>NC_000854 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 786657 25 100.0 39 CGATTAAACA ......................... GTAGACGCCTGCACGGTTCAGCAAATACACGGCATCCTG 786721 25 100.0 38 CGGCATCCTG ......................... AACTGGAAGAGGGGGAGTAAGAGAGCGTTCTGGGGCTA 786784 25 100.0 37 TCTGGGGCTA ......................... GTAGACCTGGCCGTCGAGGTGTATCTCCATGCAGCCC 786846 25 100.0 40 CATGCAGCCC ......................... TTAGAAGCCTATTAGAGCAGGGCGTGGACGATGGCTCGAT 786911 25 100.0 38 ATGGCTCGAT ......................... ATAACCTCGGTGCCAACGCGTTCGCCGTGAATGCTGGC 786974 25 100.0 41 GAATGCTGGC ......................... GAGAACCTGTAGCGCTCGAGCCTCGCAGCCGCCCTAACGGC 787040 25 100.0 40 CCCTAACGGC ......................... AAGAGAATTTGCGCCGATGAGGCGGGCGAGGGGTGACGGT 787105 25 100.0 39 GGGTGACGGT ......................... CTTCAGGTCTGCAATCGCCGCCCTGAGGTTCTGAATATC 787169 25 100.0 41 TCTGAATATC ......................... ACCCGCCGGCGGCCTCCTCGGCGGCATAGGCTGCACAACCG 787235 25 100.0 38 TGCACAACCG ......................... GGGAGACTGCTAATCCGGAGGAGGCCCCGTGTGCAAAA 787298 25 100.0 37 GTGTGCAAAA ......................... TCCTAACCGGCGGCCTCCGTATTATCCGGGGCGGCGG 787360 25 100.0 39 GGGGCGGCGG ......................... CTGGTTATAGTGAGGCCCTCCGGAGTCTCTATCACAACC 787424 25 100.0 37 TATCACAACC ......................... CTTTACGCTGCCTTTCTGGCGGGGGTCCTGAGCCAGG 787486 25 100.0 42 CTGAGCCAGG ......................... TTACGGCATAGGGCTAGACCCTGCTATGAGCGGGGCACCGAC 787553 25 100.0 38 GGGCACCGAC ......................... CTTACCACCACCATTGGAGCCACCCCAGAGCTGCCTGG 787616 25 100.0 38 AGCTGCCTGG ......................... GATTGCATAGGCGATATACCCGAATCCCAGGTCGGTAA 787679 25 100.0 47 AGGTCGGTAA ......................... AGGAGGCGGAAGTACGAGATAGTTGTTGGGCCCGGAGATGCCGGCTA 787751 25 100.0 39 ATGCCGGCTA ......................... TCCTGGACCTCCGCCTACCCCGCGTCCTAGTCTCCCGGG 787815 25 100.0 40 GTCTCCCGGG ......................... TGGACCCACAAGAAGCTGGTGAAGAGCATTATGGAGTCAA 787880 25 100.0 40 ATGGAGTCAA ......................... CCACCGCCTGAGCTCCCTCTCCAGCTCGGGGTCCACCTGG 787945 25 100.0 42 GTCCACCTGG ......................... ACCACGACGGTCTCCTCGCCCACGCCGCAGTAGTAGTCCGTG 788012 25 100.0 44 GTAGTCCGTG ......................... TGAAGAAGCAGCCTAGGCCTATACTAGTCTATGAGCTCTCGAGG 788081 25 100.0 42 GCTCTCGAGG ......................... TTATGAGGTGTGGGAGCGTGGATGGTGAGGTTGTTATAAAGT 788148 25 100.0 39 GTTATAAAGT ......................... AGTGGGCAAGCGGATAACATCTCTATAGAGAGGTCTACG 788212 25 100.0 46 GAGGTCTACG ......................... CCACCTGGCGAGCCGCCCACCACCCTGCGGCATACGCAGCGCCTGG 788283 25 100.0 46 CAGCGCCTGG ......................... TCGAGCACTTCCAGGCGGCTGGCCTTGCTAGGCTTGAGAACGGCAG 788354 25 100.0 42 AGAACGGCAG ......................... GCGGTGGTTGTGCTAGCCTTCGCATTCGCCCTCTCGGGCCCC 788421 25 100.0 39 CTCGGGCCCC ......................... CTCTTTCTCGAGCACCAGCCTGCCTTCGGAGTCCATAGC 788485 25 100.0 42 AGTCCATAGC ......................... TTCACAGTCCACGCCTCGCAGGTCTACCATCTAGTCGATATT 788552 25 100.0 39 AGTCGATATT ......................... GCCGCGCTGAACGCCTACTTGCCGCCTGGCTTCGAGGCA 788616 25 100.0 40 CTTCGAGGCA ......................... ATCACAAAAACGTGAACGCGCCCGCCCGGCTACAGCTTCT 788681 25 100.0 40 TACAGCTTCT ......................... CCTCACGTACAGCCACATGGTCCCCAGGCCAGCCAGGACG 788746 25 100.0 36 AGCCAGGACG ......................... TTACGGGTGGTGTAACTAGAAATAACTATGAAGATA 788807 25 100.0 42 TATGAAGATA ......................... GAAGCAACTCAGAAGAGCTTCCCTCTTGACTCTAAAGCCCTT 788874 25 100.0 41 TAAAGCCCTT ......................... ATGTGCATGGAGTGGGCATCAGAATTAATGAGATAATCAAG 788940 25 100.0 40 GATAATCAAG ......................... CTCGGTTACGGCGTTAGCCCCGCCGTTTGCATTGACAAAC 789005 25 100.0 38 ATTGACAAAC ......................... GTTGCCCTAGCACCCCTGCTGGCCCTGCTCCTAGTACT 789068 25 100.0 38 TCCTAGTACT ......................... TACAACTTCCTGAGGTGGCTCGCCGCCTACGGCCCCGT 789131 25 100.0 41 ACGGCCCCGT ......................... TGCAGCCAGCTTTACAACGCTGATCCTCTTCTCACTCCTAA 789197 25 100.0 40 TCACTCCTAA ......................... GTATATAATGTCGGGGGCTATCCCGCTGCTCATATCCACG 789262 25 100.0 44 CATATCCACG ......................... CTGGAGCGCCGGGAGCTCAAGAGGGACGGCAGGCGCAGGGCGAG 789331 25 100.0 GCAGGGCGAG ......................... ACGGTGGGGC ========== ====== ====== ====== ========== ========================= 42 25 40 GCATATCCCTAAAGGGAATAGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-4.60,-4.40] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [78.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [377,137] Score: 0.18/0.18 # # Final direction: F [0.45,0 Confidence: MEDIUM] >NC_000853 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1519912 30 100.0 41 AACTCAACGG .............................. TCAGTTCCCCTGCTTTCTGGATTGTTAAGCGAGGATCTTCC 1519983 30 100.0 36 AGGATCTTCC .............................. TCATACTCATCCCTCCCTCAAACCTTCAAATTGTCC 1520049 30 100.0 35 CAAATTGTCC .............................. CCTGACGGCAAAATCGTTTTCCGCACACGCATTGA 1520114 30 100.0 36 CACGCATTGA .............................. ATCTTTCTAATCTTATAGGTTAGAAACGGCTTCTAA 1520180 30 100.0 36 CGGCTTCTAA .............................. AGGACTTCTTGTTGTAGTTTGCGGAACATATCATAC 1520246 30 100.0 36 CATATCATAC .............................. GAATTGCTCTTGTACGAAAAGCTCGAATCCTTCGTC 1520312 30 100.0 36 ATCCTTCGTC .............................. TCAGAGGAGACTACGACCTTTTCGAATACGCCGACA 1520378 30 96.7 TACGCCGACA .........A.................... GCTCCTCCCT ========== ====== ====== ====== ========== ============================== 8 30 36 GTTTCAATACTTCCTTAGAGGTATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.40,-2.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [65.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [922,204] Score: 0.18/0.18 # # Final direction: R [1.23,4.5 Confidence: MEDIUM] >NC_000853 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 369170 30 100.0 37 AACTCAATGG .............................. AGACAATCGTGGATCAGGTCATCAATGCCCTGAATTA 369237 30 100.0 37 CCCTGAATTA .............................. ACTTGTGGAGATTGAGGAACATCTAGGAAAGAACATC 369304 30 100.0 36 AAAGAACATC .............................. AGCGATAACATTCAATCCTTCGACGAGGTACACCAA 369370 30 100.0 37 GGTACACCAA .............................. TAATCTTGTCTGTAGGATCCTCTGAAAACCCTCTCTG 369437 30 100.0 39 ACCCTCTCTG .............................. GTGGAAGAGTCCGCAGGAAAAGACAGCGCTGGGTAGGTA 369506 30 100.0 37 TGGGTAGGTA .............................. TAGGTGTCTGAAACCGAGTCAATCAGTGCATTGTCGA 369573 30 100.0 37 GCATTGTCGA .............................. CAGGAGAGCCATTTTCTGAGTATTTCGCAAGGAAGAT 369640 30 100.0 CAAGGAAGAT .............................. AGTGATCCTC ========== ====== ====== ====== ========== ============================== 8 30 37 GTTTCAATAATTCCTTAGAGGTATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [625,174] Score: 0.18/0.18 # # Final direction: R [0.45,4.87 Confidence: HIGH] >NC_000853 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1779940 30 96.7 37 TGTGGTCATG ....................G......... TTGTTTTTGGCATGCTGGCGCTGGCGCTGGCGGGCGC 1780007 30 96.7 37 TGGCGGGCGC ....................G......... CAAGCCGAATTGGAAATGGAACGATGAAACAGAAGCT 1780074 30 100.0 36 AACAGAAGCT .............................. GTTCTCTCAATGTCACGTCTCATCACCTCTTCTTCG 1780140 30 100.0 37 CTCTTCTTCG .............................. AGAAAGTAGTCGACAAGTTCGTTGATTGTCTCGTCGC 1780207 30 100.0 36 GTCTCGTCGC .............................. AGAGCTCTCCCGGGCCGTACCATCCAGGCCACCCCA 1780273 30 100.0 36 GGCCACCCCA .............................. TACAGAACATTGCACTGGAAGAGAAGAAGCAGGAGA 1780339 30 100.0 37 AAGCAGGAGA .............................. AGACATCTCGATCCTGATGAAGTAGGAGGGATACTTA 1780406 30 100.0 37 GGGATACTTA .............................. AAATCAGGATTGAACCTGACGTAGAAGCTTTGTACAA 1780473 30 100.0 37 CTTTGTACAA .............................. ACTTAAAGGAGGCAAAAAGACAGGAAAGAAGGGACGG 1780540 30 100.0 36 GAAGGGACGG .............................. AGGCAGATCTGAGGATCATTGCAGAGCGAGGAAACA 1780606 30 100.0 36 CGAGGAAACA .............................. AAGGAACTCAGGACGATTCTCTGGATCGGTCTCAAG 1780672 30 100.0 CGGTCTCAAG .............................. CCGTTGAGTT ========== ====== ====== ====== ========== ============================== 12 30 36 GTTTCCATACCTCTAAGGAATTATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.00,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [58.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [201,636] Score: 0.18/0.18 # # Final direction: F [4.87,0.45 Confidence: HIGH] >NC_000853 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 409364 30 96.7 35 ACGAAAACTG ....................C......... TTTGGGAAGAGGAGGGAGAACATGAGGATAAGTGA 409429 30 100.0 37 GGATAAGTGA .............................. TAATCAAAATGTATCCAGACGGAACATCTAAAGAATT 409496 30 100.0 37 CTAAAGAATT .............................. TTCCAGTCCAACCGTCGACTGAGTGTGAATGACTCCC 409563 30 100.0 36 AATGACTCCC .............................. CACCCGTGATGTCTATCGTGTTGCCTGTCGTTACCG 409629 30 100.0 36 GTCGTTACCG .............................. GCGTTTCCACTCGTATCTATCGCTCTCACACGGAAG 409695 30 100.0 42 CACACGGAAG .............................. TTGTGCCTGTAAAGGGGACAGTAGATACTGAAAGTTTATATT 409767 30 100.0 35 AGTTTATATT .............................. CCGACAGCGAATCAGCGAATCCCCACGATGGTGCG 409832 30 100.0 39 CGATGGTGCG .............................. AGGTGCAATCGCAGGCATCTGGAAGCTCCAGAACAAAGG 409901 30 100.0 36 AGAACAAAGG .............................. CAGAGTAATGAGAGGAGTCATATTTGAAATCGATGA 409967 30 100.0 36 AAATCGATGA .............................. CCGGAAGTAGTAGGGTTCGTCGCCGGGCTCTGTGAT 410033 30 100.0 36 GCTCTGTGAT .............................. GTCTGAACTCTGCCTTGAACAATGCCTCCGAAGAAT 410099 30 100.0 36 TCCGAAGAAT .............................. CATTTGTAGCACTATCATAAGTCAGAGTTTTCCCCG 410165 30 100.0 36 GTTTTCCCCG .............................. AGGAAACGAATACGAAATCTGGATAAGAGAAGCAGA 410231 30 100.0 35 GAGAAGCAGA .............................. TATTGTGCTTTTGTTCAGAATGCTTTCGAGTCTGT 410296 30 100.0 38 TCGAGTCTGT .............................. TTTGAGCCTGATCGGGATAGCAGAGAACTTCACGTGCT 410364 30 100.0 36 TTCACGTGCT .............................. GTGTCCTTCAGTAGCAAATGGAGCTACAGGAAGAGC 410430 30 100.0 37 CAGGAAGAGC .............................. ACTTGAAAGTGCTTGAAAAAGTTGTGGAATAGCGCTA 410497 30 100.0 35 AATAGCGCTA .............................. TGCGAAGGATTGTGGTAGAGCATATGAAGTATATA 410562 30 100.0 37 GAAGTATATA .............................. ATCCATTCACAATCCCGACATTGTGAAGCCAACCACG 410629 30 100.0 36 GCCAACCACG .............................. AAGTACACATCAACCATTGTCCCTTCTGTTACCTGG 410695 30 100.0 35 TGTTACCTGG .............................. TCGATGCGATGGGGTGATAGGGTGCTTCGATGGAA 410760 30 100.0 37 TTCGATGGAA .............................. AAGGCAGATCTGAGGATCATTGCAGAGCGAGGAAACA 410827 30 100.0 37 CGAGGAAACA .............................. GAAGAAAGGAGGATGAGGAAGATGGGAAAAGAGAACC 410894 30 100.0 AAAGAGAACC .............................. CCGTTGAGTT ========== ====== ====== ====== ========== ============================== 24 30 36 GTTTCCATACCTCTAAGGAATTATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.00,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [165,658] Score: 0.18/0.18 # # Final direction: F [4.87,0.59 Confidence: HIGH] >NC_000854 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 717248 24 100.0 39 ACCATGTGCA ........................ AGCATCCGAGGGGCCCCACAATGAGGCTGGGGAGGGGTA 717311 24 100.0 41 GGGAGGGGTA ........................ TGGGCCCAGGTCCTGCTGTGACAATAGGTTTCCGTTGCTGT 717376 24 100.0 42 CCGTTGCTGT ........................ ATCTATAACATCATCGCGTGCAGCAGGGGGCCAGAGGACTTC 717442 24 100.0 45 AGAGGACTTC ........................ GGTCCTGGTCTTGCTCCCCCGCGACTACTGGCAGCTCTTCCAGGG 717511 24 100.0 41 TCTTCCAGGG ........................ TGAGCCTAGCCAGCTCGGCCCTGTTACGGGCCTCAACCTCA 717576 24 100.0 38 CTCAACCTCA ........................ TCGCCATGTAGTCGTACATCGCCCTCTTCAGCACGTCA 717638 24 100.0 37 CAGCACGTCA ........................ CCGCCGAAGAGGGCCCAGCCTATGATTATTCCGAGGC 717699 24 100.0 41 ATTCCGAGGC ........................ TCTTCATCTACAACTTTTACAAAAAAGCATGGGCTCACGGG 717764 24 100.0 41 GGCTCACGGG ........................ TGTGCTAAGAGCCCCGAGAAATGTGTAGCCTCGGAGGGCCC 717829 24 100.0 52 CGGAGGGCCC ........................ ACGTCGAGGTTAGGGTTATGGTGAACGCCCAGGGGCAATTAGAGTATACCGA 717905 24 100.0 43 AGTATACCGA ........................ AAGGCAATACTCAGGATAGACAGGTACGCCAGGCAGGAGGTAG 717972 24 100.0 41 CAGGAGGTAG ........................ CGACTGTGGCTATAGCCAGGGCACCGACGACACCGTACTTC 718037 24 100.0 38 ACCGTACTTC ........................ CCTCTCCCCCTACACGACAACGAGGAAGACGGGGCCCT 718099 24 100.0 41 ACGGGGCCCT ........................ GCTAAGCAGTGCATACGACACTTCCTTACCCTGCCGATCGA 718164 24 95.8 44 TGCCGATCGA ......C................. ATCGCATAAGGGCTACAGGAATCCACGTAGAGTTGCTAGGGAAA 718232 24 95.8 39 GCTAGGGAAA ......C................. GCTGTAGAGGGCGGCGTAGTGGAAAGCCCGCCTCCGCCA 718295 24 95.8 49 GCCTCCGCCA ......C................. ACAAACTGGTTTTCATGTATCTGTGTCTCTGTAGCCGTATCAATAGCAT 718368 24 95.8 42 TCAATAGCAT ......C................. CTTTCCCGTCCACTCCAACGAAATCCACGATAGATAGTATTG 718434 24 95.8 43 GATAGTATTG ......C................. GCGGCGCGGCAGTAGGAGGTCTAGCATGACCCCTATGAGGACG 718501 24 95.8 42 TATGAGGACG ......C................. CAGAATTTCTGGGGTTTCAGCTTATAACGGCTGGGCGGCAGA 718567 24 95.8 42 GGGCGGCAGA ......C................. AGCTCGTAGAGGTCAGACTTGTCCACCCTTAGATCGGCCGCC 718633 24 95.8 44 ATCGGCCGCC ......C................. AAGGCAAAGCCGATTGTCAAGCCCAAGCCCCCGGCAATAAAGAA 718701 24 100.0 47 CAATAAAGAA ........................ TGGGTTAGGTGATGCTGTAAGGATGGTAAGTTGGTTCCTCTTGACTA 718772 24 100.0 46 CTCTTGACTA ........................ GGCAAGAAATAACACCACAGCACCCAGACTTAATATAAAAACTGCA 718842 24 100.0 41 AAAAACTGCA ........................ AGCATATTCGCAACTTCCTCAAGCGCTTCCTTCGCCTCTTT 718907 24 100.0 43 TCGCCTCTTT ........................ TAGGGTCCTCGTGCTACTGGAACCCACTCCTAGGGAGCTCCGG 718974 24 100.0 GGAGCTCCGG ........................ TGGTTTGTAG ========== ====== ====== ====== ========== ======================== 27 24 42 GAATCTTCGAGATAGAATTGCAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.50%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [2,83] Score: 0.18/0.18 # # Final direction: F [0.27,0.18 Confidence: LOW] >NC_000853 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 396568 30 100.0 36 AACTCAACGG .............................. GAAGGTTTGATGTAGAAGGTGGTGTGTACTGGAGAA 396634 30 100.0 35 TACTGGAGAA .............................. CCAGAGAAGGAGGAGTGTTTTGGGATTTTGCATGT 396699 30 100.0 37 TTTTGCATGT .............................. TGATCCAGACGGCATTCGTCCTGTACTGAGCTGGAAG 396766 30 100.0 37 GAGCTGGAAG .............................. TCAACCTCAAGCACCATTTGCCCGTAGCGCGTTGACA 396833 30 100.0 37 CGCGTTGACA .............................. ACTAGTATGAGCTACTACAATCCAACCACTGCACCTA 396900 30 96.7 39 ACTGCACCTA .........G.................... ACGTGAGCGCGTTTCTTTGCCATTTTCAGTATCGTATTT 396969 30 96.7 36 TATCGTATTT .........G.................... ACCTGTGCTAAATTCTCATCCCAGTATCGGATCTCG 397035 30 96.7 TCGGATCTCG .........G.................... TCTAAACCAG ========== ====== ====== ====== ========== ============================== 8 30 36 GTTTCAATAATTCCTTAGAGGTATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [628,174] Score: 0.18/0.18 # # Final direction: R [0.18,4.87 Confidence: HIGH] >NC_000854 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 1277299 24 95.8 38 AACGACTACC .................G...... CTCCGGAGCCTCGGCTGTAACCGAGTCGGCCATACTCA 1277361 24 95.8 40 GCCATACTCA .................G...... TAAGACTAGCTGGATGGAGGCCATGCTGGGGGCCACCATA 1277425 24 100.0 45 GGCCACCATA ........................ CCGAGGGTATATGGTTCGACGAAGTCGACAAATGGGCGAGGGCGG 1277494 24 100.0 43 GCGAGGGCGG ........................ AGCGGGGTGAGTAGCCGTGCCTTGGGCTGACTGCAGACTATGT 1277561 24 100.0 38 CAGACTATGT ........................ ACCTAAGCAGCTTCGACGTAACCGTGTTCACGTGCAGA 1277623 24 100.0 37 CACGTGCAGA ........................ GGCTCCATGGCTGGGCGGAGAGGGCAAGGTGGAGCTG 1277684 24 100.0 41 GGTGGAGCTG ........................ GCCAGCCGACTTCCGCCTGCTAGGCCCCTTGGTGGGGTCTG 1277749 24 100.0 39 GTGGGGTCTG ........................ TCATAGTCTGGGGGTTCTGGTTCCTCCTAGGCGTCATAA 1277812 24 100.0 45 GGCGTCATAA ........................ TAGACGGAACTAGCGCGCTGAGGATCGAGCCACTCTTCAGGGTAG 1277881 24 100.0 47 TTCAGGGTAG ........................ ATTCTCTGGCTACCTCTTCGAGCGCTTCCTTCGCCTCTTTATCCACC 1277952 24 100.0 38 TTTATCCACC ........................ CTCTTATATATTTAATCAGTATAACCCTGACAAGCTCA 1278014 24 100.0 40 GACAAGCTCA ........................ CCTCTAGTGAGCGTGGAAATTCCCAAAACACCATCAGACT 1278078 24 100.0 41 CCATCAGACT ........................ GCGTATGGGGAGCGGGCTGGGCCCGCGGTCATGCTTGCGCT 1278143 24 100.0 38 TGCTTGCGCT ........................ CCAGGCACTTGTGTTAAGGTTCTCGAAGCTGAGGATAG 1278205 24 100.0 42 CTGAGGATAG ........................ GATTCGCCCAACTGGGCGTGGAAGCGGCTCGGCGCCTTCGTC 1278271 24 100.0 42 CGCCTTCGTC ........................ CAGCACGGTCAGCTGGAGAGGCCAGTAGAGGGGGCCGAGCAG 1278337 24 100.0 38 GGCCGAGCAG ........................ CTGTAGGGCTAGGATCGAGAGGTTCAGCAAGATGGTGT 1278399 24 100.0 40 AAGATGGTGT ........................ GAGAGGCTGGGCCTCACTGGTAGGGTCGTTATAGTTTCCG 1278463 24 100.0 ATAGTTTCCG ........................ TGCACATGGT ========== ====== ====== ====== ========== ======================== 19 24 40 CTTGCAATTCTATCTCGAAGATTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.50%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [50.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [256,2] Score: 0.18/0.18 # # Final direction: R [0.18,0.27 Confidence: LOW] >NC_000853 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 412 30 100.0 38 NNNNNNNNNN .............................. TCTGTGATCTGTTAACGGGGACATCCACACCCAAAATC 480 30 100.0 38 NNNNNNNNNN .............................. ACTGTCGGAGATGTTCTGCTGTGCATCGTCGAGAGTTT 548 30 100.0 37 NNNNNNNNNN .............................. ATATAAGCCTTTTCCAGTCTTCGGGGGACATTTCCCA 615 30 100.0 37 NNNNNNNNNN .............................. ATGCGAGCACTGTCCTCTCCAACATCCATATACACCG 682 30 100.0 37 NNNNNNNNNN .............................. CATACTCCAGCATCAAGCAACTTGCTGGCGAAATTTC 749 30 100.0 36 NNNNNNNNNN .............................. ATCCATATCAACGTTGCATATTCTCGTTGATAAAAA 815 30 100.0 37 NNNNNNNNNN .............................. GCGACAAGCCCACGTTCAGGCACGAGGTGTTCCCTGA 882 30 100.0 37 NNNNNNNNNN .............................. AAGTTTTACCTTTTCTCAGACAACTTCAACTGGAAAA 949 30 100.0 37 NNNNNNNNNN .............................. TCGATTATTTCTTTTACAAAGACATGCGATCATACAA 1016 30 100.0 35 NNNNNNNNNN .............................. TATACGTTGTAGAAATCGCAAAGGTGGTGATGTTA 1081 30 100.0 36 NNNNNNNNNN .............................. TCTCGAATCCGATATAATCATATTTCCTTATTATAT 1147 30 100.0 37 NNNNNNNNNN .............................. CCGCATCTCGTAGGTATTGCTTGCCTTCTGTTCCCTT 1214 30 100.0 35 NNNNNNNNNN .............................. TAAACTTGTAAATCCTTTTGAAGACTTAGAACAAC 1279 30 100.0 36 NNNNNNNNNN .............................. GAAACGCCCGCAAACGCTCATCACAAGCCCGTTTCC 1345 30 100.0 36 NNNNNNNNNN .............................. TTGAGTATAAAATCTTCTTCTGATAATGACAAAACA 1411 30 100.0 37 NNNNNNNNNN .............................. TGCTTCTATTACTCTTTGTAGCACGTTCGTGAACTCA 1478 30 100.0 36 NNNNNNNNNN .............................. TCGATAATCTCAGATGCCTCGCCTCAATTTCAATTG 1544 30 100.0 36 NNNNNNNNNN .............................. CTCCACAATGAAAAGAATAGATGGTAAGGTGTGCTT 1610 30 100.0 37 NNNNNNNNNN .............................. CTACTATCTTCTATATATATATTTTTGTTTTTGTTTT 1677 30 100.0 38 NNNNNNNNNN .............................. CTATTTCCCTCTGCCGTCTCTTCGAAATGATCACCTCT 1745 30 100.0 38 NNNNNNNNNN .............................. TGTGAAGGCGTATGAGGTGGAGGATATTCCTGCAATTG 1813 30 100.0 37 NNNNNNNNNN .........A.................... TTTTTCCAGCATCTTCTTCACGAAGTACGTCTTCATC 1880 30 100.0 36 NNNNNNNNNN .........A.................... GCGATGTTGCGAGAACGATGAAAGATTTGTATGAAC 1946 30 100.0 37 NNNNNNNNNN .........A.................... TTGTCGAACTCTTTGGTACTTCCATCCGGATACATCT 2013 30 100.0 37 NNNNNNNNNN .........A.................... GAGTAGTACAGAGGAGAGAGATGCAGATATCCACGAC 2080 30 100.0 35 NNNNNNNNNN .........A.................... CTCGATCGCTTGTGGTATCTCTGTCTGTGCGAGCT 2145 30 100.0 39 NNNNNNNNNN .........A.................... TTGTGATGATGTCGCCAAGCTTTAGGGGGACATCTGTTT 2214 30 100.0 36 NNNNNNNNNN .........A.................... CTGATCTAGCCGTCCGGCCAGTCACAGGTTGAGATA 2280 30 100.0 37 NNNNNNNNNN .........A.................... ATGTATTGCAAGGAAAAGCAAAAATAAGATTCGACAG 2347 30 100.0 37 NNNNNNNNNN .........A.................... TCGAACTCGAAGAGGCCTATGCACCTGTCCAGCCTAT 2414 30 100.0 36 NNNNNNNNNN .........A.................... ATCCTCCTTACTTTGGCCGACACCGTTCGTCCGTTT 2480 30 100.0 36 NNNNNNNNNN .........A.................... CTTCAAGCCATACTAATATTGCGTATTCTCTTCTCA 2546 30 100.0 37 NNNNNNNNNN .........A.................... AAAAGCCTACGAAGGGCTTCGAGTACCACCAGCTTTT 2613 30 100.0 37 NNNNNNNNNN .........A.................... GGGCTGAAAAATTTCCCATTTCGTTTTATCACCTCCT 2680 30 100.0 37 NNNNNNNNNN .........A.................... CAAGGGGAGGATGATACTGAATGGATAGGGGAACTCA 2747 30 100.0 36 NNNNNNNNNN .........G.................... ACCATTCATCCATTACAACCTCTTTGCCTCTAATTT 2813 30 100.0 36 NNNNNNNNNN .........G.................... TGATGTCTTCCCATTGTTTCGTGTTGTCAAACACCT 2879 30 100.0 37 NNNNNNNNNN .............................. TAAAGCATACGCTCCAAAACGTGAACAAATTCTCTCA 2946 30 100.0 35 NNNNNNNNNN .........A.................... AGTTGGACGACGATCTTGTATTCATAAATGTTGTT 3011 30 100.0 35 NNNNNNNNNN .............................. TAAGACATTCTTTCGCTAAGAAAATCTAATAGTTT 3076 30 100.0 1 NNNNNNNNNN ...................T...C.A...A NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 41 30 36 GTTTCAATACTTCCTTAGAGGTATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.40,-2.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [413,51] Score: 0.18/0.18 # # Final direction: R [0.96,4.5 Confidence: MEDIUM] >NC_000853 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1631790 30 100.0 36 CTCGGTTGGT .............................. ACAAGCGTTGTGCCATCACTACTTGTTCGAAGCCCA 1631856 30 100.0 35 TCGAAGCCCA .............................. AGACGTTCCTGTCGCTGGTAGTGTCGAATATTCGT 1631921 30 100.0 36 GAATATTCGT .............................. TTGTGTCTGAAGAATGAGCATCGAGTTCTACACGAT 1631987 30 100.0 TCTACACGAT .............................. CCGTTGAGTT ========== ====== ====== ====== ========== ============================== 4 30 35 GTTTCCATACCTCTAAGGAAGTATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.40,-5.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [82,647] Score: 0.18/0.18 # # Final direction: F [4.5,0.55 Confidence: HIGH] >NC_000868 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1760062 30 100.0 37 NNNNNNNNNN .............................. TCTATCTCGGAAAGCAGTAATCTTGCTAGAGTAGTCT 1760129 30 100.0 37 NNNNNNNNNN .............................. CTAACACAATTGTCTGAAAGTTACTGTAAATTCCACG 1760196 30 100.0 37 NNNNNNNNNN .............................. GCCGAAAGGCCGGCGCTGAGGATCTGTTTCATCGGTT 1760263 30 100.0 46 NNNNNNNNNN .............................. CGGGAGTGTTGAGACGGTGAGGATATCACGGGTGGACACTGGGAAT 1760339 30 100.0 37 NNNNNNNNNN .............................. GGAACCCCTAGGGGGTCTAAGGCGCCGGGGCCAACGC 1760406 30 100.0 38 NNNNNNNNNN .............................. CCCGTCTGATCTACGTAGAATCTGCGTGTTGCCCCTGT 1760474 30 100.0 38 NNNNNNNNNN .............................. CGTTGGGCTTCACCTCAACCGGCTTCACGTCTGTTGGA 1760542 30 100.0 38 NNNNNNNNNN .............................. ACATTTTTTTGCAAAAATTTTTCAAAAAATCGGCCTAA 1760610 30 100.0 37 NNNNNNNNNN .............................. TGAGCCTTCATCAACTTCATCAACTTCATCTTCAAAT 1760677 30 100.0 37 NNNNNNNNNN .............................. TAATTGTTACATGGTGATGGCGTCTTGGCGAAATGGA 1760744 30 100.0 36 NNNNNNNNNN .............................. CCACTTAAATTCCGCCGAAGCTATTTCGAATATCTT 1760810 30 100.0 37 NNNNNNNNNN .............................. GAAATCATTGAGGGACTCGTCGGCCCAGAGGTCGGAA 1760877 30 100.0 37 NNNNNNNNNN .............................. TGGCGAGCTTTCCCCTGCCGGCCCTCGCTATGAAGAG 1760944 30 100.0 38 NNNNNNNNNN .............................. TCAACTTACGCGCAATACCATCAAGAACACTATTCTCC 1761012 30 100.0 42 NNNNNNNNNN .............................. CTATACCGAGTTCATATAAGAGGTTCACTAAGAAAGCAATAA 1761084 30 100.0 36 NNNNNNNNNN .............................. TTGCTCCCACATTGAGGAAGTTAGTTGGGAGTGCGA 1761150 30 100.0 37 NNNNNNNNNN .............................. TCGATCCGCCCGGGCTGGTATATCTTCGCCGACTTGA 1761217 30 100.0 37 NNNNNNNNNN .............................. CCGCAGTAGCCAGCTCTTGTCCGCCGTTGCCCCCTAT 1761284 30 100.0 37 NNNNNNNNNN .............................. GCAGTTCCAATTGCGAGTAAAGGCCCTCCGTTTCTTC 1761351 30 100.0 37 NNNNNNNNNN .............................. TTTTCTGATATAAACGATGTAGTGTTCGCTTAGGCTT 1761418 30 100.0 37 NNNNNNNNNN .............................. ACTGGCTCGATCGAAGGCTTAATCGTTGCAGATGCAT 1761485 30 100.0 40 NNNNNNNNNN .............................. CCTCATTCCAGTCCGTTCCCGAGAGGTTCGTCAGGGGCAG 1761555 30 100.0 38 NNNNNNNNNN .............................. GAGTTCCCGCTGACCCTCCTCGCCTGCACCAGTAACGT 1761623 30 100.0 37 NNNNNNNNNN .............................. GAAAATTAAAAGGCGGTTCATCGGCAACTTTGCACAT 1761690 30 100.0 39 NNNNNNNNNN .............................. TGTTGATTTTGAGCTTGAGAATATCAAGGATGCGCTCGG 1761759 30 100.0 36 NNNNNNNNNN .............................. CTCATCAAGTATGGAACAAACATACTTGCCTTTGGA 1761825 30 100.0 35 NNNNNNNNNN .............................A TAGTGATTTATTTAAGGACGTTTGTAGCTAGCTAA 1761890 30 100.0 1 NNNNNNNNNN .....G.C..A......GA.AG.ACAG... NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 28 30 37 GTTCCAATAAGACTAAAATAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:73.33%AT] # Reference repeat match suggestion: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [60.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [499,127] Score: 0.18/0.18 # # Final direction: F [5.86,0 Confidence: HIGH] >NC_000909 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 132922 29 100.0 36 TGATTGCCCT ............................. TCAGGGAGGTAGGAGGGAGGTTCTCCTTGGATTTCT 132987 29 100.0 48 TTGGATTTCT ............................. TCTATTAAGTCCCATGCAGACCTACCAATACGTTCATAGTAAGGCCTA 133064 29 100.0 38 GTAAGGCCTA ............................. TTATGTTACAAAAGTTGGAGAGGAAGATTTAAAACTTG 133131 29 100.0 37 TTAAAACTTG ............................. TTTAATTCTAATGCCTTGTTTTTTACATCTTCTGGAA 133197 29 100.0 41 TCTTCTGGAA ............................. TGTCTTTAATTTCATCTCTATAGCTTCTTCTATTGCTTTAA 133267 29 100.0 37 ATTGCTTTAA ............................. TAATGTAAATTTAAAAATATAACGTTGCAAATAAGGA 133333 29 100.0 39 CAAATAAGGA ............................. TCAGTAGTTAAAACTTAAAGCACAAAACACCTTCATTCC 133401 29 100.0 43 CCTTCATTCC ............................. TGAAGTATTTTTATCTTTTGCGATATTTTCTATAATCTCATCA 133473 29 100.0 39 AATCTCATCA ............................. TTATTTTTGTTGTTTAAATCTATTGTGTATAATGTGGTA 133541 29 100.0 41 TAATGTGGTA ............................. CTTTTTGCTTCATTTTCATTTAAATTAACTATAAAACAGTA 133611 29 100.0 44 TAAAACAGTA ............................. CATGGAGCAAAACAACATATTGTTTTAATAGTGGATGATTTTTA 133684 29 100.0 38 ATGATTTTTA ............................. CGCATTACAGAATTTATATTATTTATATACTGTTTATG 133751 29 100.0 39 ACTGTTTATG ............................. CAAAACACCACCTTCAATAAACTTATCAATTTGATATTT 133819 29 96.6 48 TTTGATATTT ...............A............. TTGTATTAATTCCAGTTGTAATATTTGATAATGAGACATTAAAATCAG 133896 29 100.0 TTAAAATCAG ............................. CTTTATCTAATTTAACCCGCTTATGGTTTTAGATGAACCCCGCTCC ========== ====== ====== ====== ========== ============================= 15 29 40 ATTAAAATCAGACCGTTTCGGAATGGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.52%AT] # Reference repeat match suggestion: F [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.80,-1.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [71.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [371,191] Score: 0/0.18 # # Final direction: F [1.55,0 Confidence: HIGH] >NC_000909 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 236564 30 100.0 42 TGATTGTCCT .............................. GATATTATTAAACAACATAATCAGTGTAATTGTATAGATATG 236636 30 100.0 36 TATAGATATG .............................. ATTTGATGATTTGGTGGATTATACAAATAGAAATTA 236702 30 100.0 39 ATAGAAATTA .............................. TACTGTTAAATATTCAGATTTATTAATCAGTTATTTCCT 236771 30 100.0 38 GTTATTTCCT .............................. GATTTTCTTATGTTTAAAATCCTTATGAACGCTCGGAT 236839 30 100.0 ACGCTCGGAT .............................. TCTTTATC ========== ====== ====== ====== ========== ============================== 5 30 38 ATTAAAATCAGACCGTTTCGGAATGGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: F [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-2.50,-2.50] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [396,1415] Score: 0.18/0.18 # # Final direction: F [0.5,0.18 Confidence: MEDIUM] >NC_000909 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 237054 30 100.0 38 GGGAGAGCCG .............................. GATTGGATGAGGGATATATCCAAAACTCAAAAGGATTG 237122 30 100.0 37 AAAAGGATTG .............................. CTGTTAGGGAACCCTAAAAAGGTTCCCTTGAGGGTTC 237189 30 100.0 37 TTGAGGGTTC .............................. CTGTTAGGGAACCCTAAAAAGGTTCCCTTGAGGGTTC 237256 30 100.0 37 TTGAGGGTTC .............................. CTGTTAGGGAACCCTAAAAAGGTTCCCTTGAGGGTTC 237323 30 100.0 37 TTGAGGGTTC .............................. CTGTTAGGGAACCCTAAAAAGGTTCCCTTGAGGGTTC 237390 30 100.0 37 TTGAGGGTTC .............................. CTGTTAGGGAACCCTAAAAAGGTTCCCTTGAGGGTTC 237457 30 100.0 37 TTGAGGGTTC .............................. CTGTTAGGGAACCCTAAAAAGGTTCCCTTGAGGGTTC 237524 30 100.0 37 TTGAGGGTTC .............................. CTGTTAGGGAACCCTAAAAAGGTTCCCTTGAGGGTTC 237591 30 100.0 43 TTGAGGGTTC .............................. TCATTTGCATCATTTGTGCTGGGTCTGGCTGACTCTGTGTGTC 237664 30 96.7 35 TCTGTGTGTC .............T................ TTCTTGGAATTGCTAAGTGGTTTATGCATAGTTGC 237729 30 100.0 37 GCATAGTTGC .............................. ATGAGATTCATTCTTTGATCGAGGGCGATAGAGGTTC 237796 30 100.0 39 ATAGAGGTTC .............................. GAATTTTCGCACACGCGCTACATCTAATAAACAGATTTG 237865 30 100.0 AACAGATTTG .............................. GATGAAAAGAA ========== ====== ====== ====== ========== ============================== 13 30 37 ATTAAAATCAGACCGTTTCGGAATGGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: F [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-2.50,-2.50] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [886,389] Score: 0.18/0.18 # # Final direction: F [1.09,0.27 Confidence: MEDIUM] >NC_000909 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 378 29 100.0 41 NNNNNNNNNN ............................. TTTGCTCCTGCATTAGATGGAGGAGCGTATGTAGCGTATTA 448 29 100.0 38 NNNNNNNNNN ............................. TTTTGCAGAGTTGTATTCTGGCAGTGCGGATATTATAA 515 29 100.0 38 NNNNNNNNNN ............................. AATCTAATACAAACAGTGAAGATACTGAATACTGCGGA 582 29 100.0 41 NNNNNNNNNN ............................. AACTGTCTCTTAACATATTCTGCAGTTTTACAACTTTCGAA 652 29 100.0 38 NNNNNNNNNN ............................. GCATAATTGATGAGGCTAATAGAATAGCACCTAATAGA 719 29 100.0 38 NNNNNNNNNN ............................. GATTAATGTAATACTTTTTTATAAATTTATAATGCAAA 786 29 100.0 41 NNNNNNNNNN ............................. GTAATTTCTACGACTTGGATTACTTCACGATGGAAATCAAA 856 29 100.0 38 NNNNNNNNNN ............................. GATAGAAGAATTTGATGCTTTATTTGGATGTTTGAAGA 923 29 100.0 43 NNNNNNNNNN ............................. GCAGCTTGTGGCGATACCTTCAAGTTCAAAATTTTTCCCCATA 995 29 100.0 41 NNNNNNNNNN ............................. GACTAACTTTAATTATATCCCTTTCAGCTTCCTCATCATAA 1065 29 100.0 39 NNNNNNNNNN ............................. GTAGAAATTGTCTCAATAACTGCGTTTGTTGATGGAACA 1133 29 100.0 39 NNNNNNNNNN ............................. GCAAACAGCATTATAACAATTGATAGACAGAAATTCAGA 1201 29 100.0 37 NNNNNNNNNN ............................. TATTGGTGAAGTAGTTGCTTATGACTTAGATAGTGGA 1267 29 100.0 42 NNNNNNNNNN ............................. TGACATAATTAAAGCATAATAATACTTTAACGCTTCTTTTAA 1338 29 100.0 42 NNNNNNNNNN ............................. TTATATCTCCCTCCTTAACCTTTTTTTATTTAACATTCCCAT 1409 29 100.0 39 NNNNNNNNNN ............................. TATCTACTTGGAACTACAACACTCACAGGTAAATCTAAT 1477 29 100.0 41 NNNNNNNNNN ............................. TAAGTTAAAACAATGGTTAATGTTAAGGGGGATTAAGCTGT 1547 29 100.0 42 NNNNNNNNNN ............................. TGACATAATTAAAGCATAATAATACTTTAACGCTTCTTTTAA 1618 29 100.0 42 NNNNNNNNNN ............................. TTATTACCACCCTCTTGCTTTTAAAAAGCTTTCTAATTCTTC 1689 29 100.0 39 NNNNNNNNNN ............................. TAATCCAGATTTGAATTGTTCCCAAGCATTACCGAGCCA 1757 29 100.0 41 NNNNNNNNNN ............................. TTTTTTATCGAAACCTTCTAAAATCATATCTCATCCCCCCA 1827 29 100.0 39 NNNNNNNNNN ............................. TCTTATTTTAAGTTACAAAAAAGTTTATAGTGGTTAATG 1895 29 100.0 39 NNNNNNNNNN ............................. TCTTATTTTAAGTTACAAAAAAGTTTATAGTGGTTAATG 1963 29 100.0 39 NNNNNNNNNN ............................. TCTTATTTTAAGTTACAAAAAAGTTTATAGTGGTTAATG 2031 29 100.0 38 NNNNNNNNNN ............................. TCTATGTCTGTGATAGTTACAATATTATTTCCTATTTT 2098 29 100.0 1 NNNNNNNNNN ..............AA.....G..AA..C NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 26 29 39 ATTAAAATCAGACCGTTTCGGAATGGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.52%AT] # Reference repeat match suggestion: F [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.80,-1.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [379,91] Score: 0.18/0.18 # # Final direction: F [1.46,0 Confidence: HIGH] >NC_000909 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1049449 29 86.2 44 ATATTGACAA ---..T....................... CCAATTTGGGCATTTCCCAACATAAACATATAATGAATCCATAC 1049522 29 100.0 40 GAATCCATAC ............................. CAGAAGTTTTTCTTGGACAAATCTTACAGGGTGTTGTCCC 1049591 29 100.0 37 GTGTTGTCCC ............................. CTTGTGTCCATTGTAAGCGTTAAAAATAATGCAAATT 1049657 29 100.0 42 AATGCAAATT ............................. CTATTTTATCACCCGTTTATGTTTTTTACGGTTAATACTATA 1049728 29 100.0 38 TAATACTATA ............................. CAACTACTTTGTAGATGATTTTTTAGAGGATTTGGAGA 1049795 29 100.0 47 GATTTGGAGA ............................. CGATACATAGTATTCTCCATTTTTCTTTTCAATAACTACATTACATC 1049871 29 100.0 42 ACATTACATC ............................. CTTGAGTGTGGAATTAGAAGAAATAAACTTTAGGAAAGGTTA 1049942 29 100.0 37 GGAAAGGTTA ............................. CATAAAATCTCTAACCTCTCCAGCGTTATCAAAAGTA 1050008 29 100.0 46 ATCAAAAGTA ............................. TTCGTTATCTGGTCTCATGTATGGTTCCAAAAACTTCAATGTGAGA 1050083 29 96.6 CAATGTGAGA ......................G...... TTATAGTCAT ========== ====== ====== ====== ========== ============================= 10 29 41 ATTAAAATAAGACCGTTTCGGAATGGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.97%AT] # Reference repeat match suggestion: F [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.80,-1.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [646,374] Score: 0/0.18 # # Final direction: F [0.87,0.41 Confidence: MEDIUM] >NC_000909 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1575519 30 100.0 38 TGATTGCCCT .............................. CGTAAATGGTTCGTCTTTATTGACTAAAAACACAGTTT 1575587 30 100.0 35 AACACAGTTT .............................. TGGGAAATATAAGTCAGAGATTGATGCTTTGGCAG 1575652 30 100.0 43 GCTTTGGCAG .............................. AAAAGATGTTGAGAGATGCATTTATTCATAAGAAATTTATTAG 1575725 30 100.0 36 AATTTATTAG .............................. TCCTTATGAAGTATTTAACTATGACGACATGAAGTT 1575791 30 100.0 39 ACATGAAGTT .............................. AAACTACCGTCTGCACAAACAGCTACCATTAATCTTAAT 1575860 30 100.0 43 TAATCTTAAT .............................. GATATTTCAGCAGATGTTTATCTGCTTCATTTAATTGAACCTC 1575933 30 100.0 43 ATTGAACCTC .............................. TGGAGGGATTTTCATTTTTTAAATTTGATAATGTATTTGAAGA 1576006 30 100.0 35 TATTTGAAGA .............................. AGTTTTCACCCCAAAAAACACTATTGTCCTTTCTT 1576071 30 100.0 42 GTCCTTTCTT .............................. TTTAATTAAGCTTAGATAATCTTGAATATTTTTTCTTGTAAA 1576143 30 96.7 41 TTCTTGTAAA ........C..................... ACACATATTGATAAGGTAGAAGTATCAGTAAATGGACATTT 1576214 30 100.0 38 ATGGACATTT .............................. CGCAATCATTAATAAATCCCAATACATCGATACAAAAA 1576282 30 100.0 GATACAAAAA .............................. AATTGTAATA ========== ====== ====== ====== ========== ============================== 12 30 39 ATTAAAATAAGACCGTTTCGGAATGGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: F [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.80,-1.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [475,297] Score: 0/0.18 # # Final direction: F [1.28,0 Confidence: HIGH] >NC_000909 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 428572 30 100.0 41 TAAGCCTCCT .............................. TAACATAACAAAAATTCATCAAGTGTTTTACATTTTATGTG 428643 30 100.0 39 ATTTTATGTG .............................. TTAATTCTATTTTTTATTTCAGTTTTGTCAATTTCTGAT 428712 30 100.0 40 AATTTCTGAT .............................. AATAATATAAGTTGGCCAATCATTTCTCGGATGGTCAACA 428782 30 100.0 36 ATGGTCAACA .............................. CGAAACAGATATATTAGGAAATTATATTGATGATAT 428848 30 100.0 38 TTGATGATAT .............................. TTTGGCAATTTATATAGCTCAATTGCGTATTCTTTCTT 428916 30 100.0 45 ATTCTTTCTT .............................. ATGAACTCTTTTAAATTATCTCTTTTACTACCCCTACAAATTCCC 428991 30 100.0 37 ACAAATTCCC .............................. TATTTACCTAATATTTTGATTAAATACTAAAAATTCT 429058 30 100.0 36 TAAAAATTCT .............................. TTTTTAGGTAGGATACTGAGGGCTGTAAGTTTTTTT 429124 30 100.0 46 AAGTTTTTTT .............................. TCAGAATTCTCATCTGCATATTGCTTCATTATTCTCTTTAACGTTA 429200 30 100.0 43 TTTAACGTTA .............................. GAGTGTGGATATGTTGAAGATTTTGGAGTTGATTATTGTGGTG 429273 30 100.0 38 TATTGTGGTG .............................. TTATAACATAAGATTTTTATGTGTTCTTTTTGTTTTCT 429341 30 100.0 38 TTTGTTTTCT .............................. ATACTCAGATTTTGTTGTATGATTTGCATCTTTATTTT 429409 30 100.0 36 TCTTTATTTT .............................. TTCGGTTATCAAAAAGTTTAAATTTATGATAGGAAT 429475 30 100.0 38 TGATAGGAAT .............................. TTTTTAACGAGAGTTTTCAGAGCATTTAGCTTTTTTGA 429543 30 100.0 GCTTTTTTGA .............................. TAAGCTTCAC ========== ====== ====== ====== ========== ============================== 15 30 39 GTTAAAATCAGACCGATTCGGAATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: F [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 90% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-2.50,-2.50] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [469,105] Score: 0.18/0.18 # # Final direction: F [0.68,0 Confidence: HIGH] >NC_000909 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 507264 30 100.0 48 TGATTGCCCT .............................. TCTGATTTTAACTACCGAAATTTTTATATATGGATTTATATATAAATT 507342 30 100.0 35 TATATAAATT .............................. TTTTATCCCTCCAAAAAATAAAAGAATAAATAAAA 507407 30 100.0 38 ATAAATAAAA .............................. AGTGTAAATGAAGATTTCTTAACTATATTGCAACAAGC 507475 30 100.0 32 TGCAACAAGC .............................. AATTCTCTACAGAAACTAAATACAAATGACTT 507537 30 100.0 39 CAAATGACTT .............................. CAAAACATGAGTGCAGAAGAGGCAAATAACATTCTACAA 507606 30 100.0 35 CATTCTACAA .............................. CCCCCGAAAAGGTTGGAAACTCAGCAAAACTAATC 507671 30 96.7 43 AAAACTAATC .............................T ATGGAACAAGAATGAGAATCTCTGGAGTGGATGTTATTAAAGT 507744 30 100.0 42 TTATTAAAGT .............................. CTTATTGCCTCTTCAAATCTATAAACTATAGCATCAACACCG 507816 30 100.0 38 ATCAACACCG .............................. TTTTTATTTTAATAATGTTTCTATCATCTTAATTTTGA 507884 30 100.0 38 TTAATTTTGA .............................. TTTTTATTTTAATAATGTTTCTATCATCTTAATTTTGA 507952 30 100.0 TTAATTTTGA .............................. AACTAAATCT ========== ====== ====== ====== ========== ============================== 11 30 38 GTTAAAATCAGACCGTTTCGGAATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: F [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-2.50,-2.50] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [486,418] Score: 0/0.18 # # Final direction: F [0.91,0 Confidence: HIGH] >NC_000913 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2875723 29 100.0 32 NNNNNNNNNN ................AT.........A. CAGCGTCAGGCGTGAAATCTCACCGTCGTTGC 2875784 29 100.0 32 NNNNNNNNNN ...........T................. TCGGTTCAGGCGTTGCAAACCTGGCTACCGGG 2875845 29 100.0 32 NNNNNNNNNN ...............AA............ GTAGTCCATCATTCCACCTATGTCTGAACTCC 2875906 29 100.0 32 NNNNNNNNNN ............................. CCGGGGGATAATGTTTACGGTCATGCGCCCCC 2875967 29 100.0 32 NNNNNNNNNN ............................. TGGGCGGCTTGCCTTGCAGCCAGCTCCAGCAG 2876028 29 100.0 32 NNNNNNNNNN ............................. AAGCTGGCTGGCAATCTCTTTCGGGGTGAGTC 2876089 29 100.0 32 NNNNNNNNNN ............................. TAGTTTCCGTATCTCCGGATTTATAAAGCTGA 2876150 29 100.0 33 NNNNNNNNNN ............................. GCAGGCGGCGACGCGCAGGGTATGCGCGATTCG 2876212 29 100.0 33 NNNNNNNNNN ............................. GCGACCGCTCAGAAATTCCAGACCCGATCCAAA 2876274 29 100.0 32 NNNNNNNNNN ............................. TCAACATTATCAATTACAACCGACAGGGAGCC 2876335 29 100.0 32 NNNNNNNNNN ............................. AGCGTGTTCGGCATCACCTTTGGCTTCGGCTG 2876396 29 100.0 32 NNNNNNNNNN ............................. TGCGTGAGCGTATCGCCGCGCGTCTGCGAAAG 2876457 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 13 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,6] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [41.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [84,107] Score: 0/0.18 # # Final direction: R [0,1.92 Confidence: HIGH] >NC_000913 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2902036 28 96.4 33 GTTATATGGT ..........................T. GACAGAACGGCCTCAGTAGTCTCGTCAGGCTCC 2902097 28 100.0 33 GTCAGGCTCC ............................ CTGTTTTCGCAAATCTATGGACTATTGCTATTC 2902158 28 100.0 33 ATTGCTATTC ............................ GGGCGCACGGAATACAAAGCCGTGTATCTGCTC 2902219 28 100.0 33 GTATCTGCTC ............................ TGGCTCTGCAACAGCAGCACCCATGACCACGTC 2902280 28 100.0 33 TGACCACGTC ............................ GAAATGCTGGTGAGCGTTAATGCCGCAAACACA 2902341 28 100.0 33 CGCAAACACA ............................ ATTACGCCTTTTTGCGATTGCCCGGTTTTTGCC 2902402 28 100.0 GGTTTTTGCC ............................ TCTAAACATA ========== ====== ====== ====== ========== ============================ 7 28 33 GGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [641,341] Score: 0/0.18 # # Final direction: R [0,1.65 Confidence: HIGH] >NC_000909 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1034820 30 100.0 44 TGATTGCCCT .............................. TCCTTTATATTTCTCTTTCAAATAATCAACCCTTTTTAAACCTA 1034894 30 100.0 38 TTTAAACCTA .............................. TGAGCTTTTTATTATCAGATATAGTTAGAGAGTTATTT 1034962 30 100.0 37 AGAGTTATTT .............................. TAAAGAATAAAATCTCGTTTTTAGTGCTATTTATTGA 1035029 30 100.0 41 TATTTATTGA .............................. TACTGCTTGGGGAGATGCTGAGAGAAAAGCAATGAAAGATG 1035100 30 100.0 38 ATGAAAGATG .............................. TTCATATAAAAATTCATCACTATATTTTTCAATTAAAT 1035168 30 100.0 43 TCAATTAAAT .............................. TTTAACAGTATATTCAAACCGTGAATATTCCGTTTCATCAAAT 1035241 30 96.7 37 TTCATCAAAT ..................T........... TCTTTTTTACAGTTGTATATCGATAGATTTAAATTTA 1035308 30 100.0 36 TTTAAATTTA .............................. TTTGAATCCTGTTTTTTTAAGTTCTTCTATGAATAT 1035374 30 100.0 40 CTATGAATAT .............................. TGGGGGTCTTTGAAATTAAGAGGGTGGGGCGTGGAATTCA 1035444 30 100.0 47 GTGGAATTCA .............................. TTTTTTCTACAGTTGTAGGTAATGCAGATTTGTTTATTCCTTTATTT 1035521 30 100.0 39 TCCTTTATTT .............................. TATTCTGATTTTCAATTTATGTTCAGCTCTTAATTTCAT 1035590 30 100.0 TTAATTTCAT .............................. CTTTATTTTT ========== ====== ====== ====== ========== ============================== 12 30 40 GTTAAAATCAGACCTCTTGGAGGATGGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.90,-3.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [467,230] Score: 0.18/0.18 # # Final direction: F [0.82,0 Confidence: HIGH] >NC_000909 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 1219844 31 100.0 45 GTTCATAAAG ............................... CAGGAGATTAATTTATTCCCAATTATATTGATATTTTTAGCTATA 1219920 31 96.8 42 TTTAGCTATA A.............................. GAGGAGAACTAATATATTACAATAATAATAATAATTTATTAA 1219993 31 100.0 37 AATTTATTAA ............................... AATGGTGTCATTTATGAACTATCAGAATGCAATTAAC 1220061 31 100.0 43 TGCAATTAAC ............................... GGAGGATATAAAGGAAGGATTAGGGGAAGCAGTTAGACAATTG 1220135 31 100.0 TAGACAATTG ............................... AGGCGGTCAT ========== ====== ====== ====== ========== =============================== 5 31 41 GTTTCCATCCTCCAAGAGGTCTGATTTTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.06%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.60,-3.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [81,481] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_000868 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 482453 29 100.0 43 GAGAGGAGGT ............................. TCAGGGCCTACACGTTAGACAGGATTGACCCCAGGAAGAACCC 482525 29 100.0 41 GGAAGAACCC ............................. AGGAGTTTCTCCCCAACTCATAGCTAAAATCACAGGGCACA 482595 29 100.0 39 ACAGGGCACA ............................. AAACCACCCTGCTGCTCTTGTAATTCCGTTAGTATCTGT 482663 29 96.6 37 TAGTATCTGT ...............G............. GGCTAATCTGTTAAAGGGCAGGGCTAAGTTGGGCAAG 482729 29 100.0 44 GTTGGGCAAG ............................. CAGGAGAAAGTGCATGGGTTCATTGACGCAATCAGTTCAATCGA 482802 29 100.0 GTTCAATCGA ............................. CCTTGGGATT ========== ====== ====== ====== ========== ============================= 6 29 40 CTTTCCACACTACTAAGTTCTACGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.62%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [48.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [315,676] Score: 0.18/0.18 # # Final direction: R [0.41,0.45 Confidence: LOW] >NC_000909 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1570374 30 100.0 45 TGATTGCCCT .............................. TGCTGTAAGCACATCTGGACTAGAAAAGTCAGAATTTTTAACCTA 1570449 30 100.0 39 TTTTAACCTA .............................. TGTTTTTATTATCTTAATTTTTTTTCTTAAAATCAGACC 1570518 30 100.0 36 AAATCAGACC .............................. CATAAGCACTTTTTTAGCTCTTTTACTTCATTTTCT 1570584 30 100.0 41 TTCATTTTCT .............................. TTTTTTGGTGGGGAATATGGAAATTGACAATAACACAATAA 1570655 30 100.0 39 AACACAATAA .............................. CGAAATAAACCAATGTTTAACTTGTGGCTGTTTTAAGAA 1570724 30 100.0 GTTTTAAGAA .............................. TGAAAATAAA ========== ====== ====== ====== ========== ============================== 6 30 40 GTTAAAATCAGACCTCTTGGAGGATGGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.90,-3.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [486,265] Score: 0/0.18 # # Final direction: F [0.37,0 Confidence: MEDIUM] >NC_000909 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1267046 30 100.0 40 TGATTGCCCT .............................. CTTATATTCACTTGTATAATTGTTTTCTATTGCATTCAAA 1267116 30 100.0 36 TGCATTCAAA .............................. CCGCATTCTTTTTGTATTTTTAACTCTTCTAAAATA 1267182 30 100.0 49 TTCTAAAATA .............................. CAAAGCTGAAATTACTGAGGAAGATACTGAGAAAGTTATAATTAAAATA 1267261 30 100.0 37 AATTAAAATA .............................. CGAAAAAGAGGGTAAATTAACAATCTATAATATTGAG 1267328 30 100.0 47 TAATATTGAG .............................. CGCATTCCATTACCTATATATATACCGTTTATATAGCCGTTTCCATT 1267405 30 100.0 37 CGTTTCCATT .............................. CTTTAATTCTTCAATGCTATTAACAGTTTCATCCCTA 1267472 30 100.0 46 TTCATCCCTA .............................. CTGAGTATGGCCTATTGGGATGACAACATACTTAATTAGCCCATTT 1267548 30 100.0 37 TAGCCCATTT .............................. TTAAACTCTTTTTTCTTATCTTCTGACAATTGTAAAT 1267615 30 100.0 39 AATTGTAAAT .............................. TTATGTGGTTTTAGAGGATGGGAAGATTGTAGAAAAGGA 1267684 30 96.7 TAGAAAAGGA ..........................A... CTTTAGCATT ========== ====== ====== ====== ========== ============================== 10 30 40 GTTAAAATCAGACCTCTTGGAGGATGGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.90,-3.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [614,82] Score: 0.18/0.18 # # Final direction: F [0.96,0 Confidence: HIGH] >NC_000909 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1456867 30 100.0 49 AGGAGATAAG .............................. TAAAGATGCACAAGGTTATCAATTAGTAATAGTAAATGAAGATACTTCG 1456946 30 100.0 41 AGATACTTCG .............................. AAATGAATTTAGTTATGATTATCATAGCAGATTGTTTAACG 1457017 30 100.0 42 TTGTTTAACG .............................. CGTTTAATGCTTATATTGCCGTGAAAGGTAAGAGCGGGCAGA 1457089 30 100.0 47 AGCGGGCAGA .............................. ATTATTCATAATAACACCAGATGAAGCTGAAAAATTGATAAAACAGA 1457166 30 100.0 41 ATAAAACAGA .............................. AAAAATTTATATACTACCAATACACTTATAATATACTTGTA 1457237 30 100.0 39 TATACTTGTA .............................. ACGAATTATTTAACAAAATATTTAGTAAAAGCATTTAAA 1457306 30 100.0 AGCATTTAAA .............................. AGGGCAATCAT ========== ====== ====== ====== ========== ============================== 7 30 43 TTTCCATCCTCCAAGAGGTCTGATTTTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.60,-3.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [85.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [222,386] Score: 0/0.18 # # Final direction: R [0.27,0.37 Confidence: LOW] >NC_000909 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 351695 30 93.3 38 TCATCTGTTG -...........T................. GGAGTTGAAGCTCATAAAATTGTCCAAGATGTCGATTT 351763 30 100.0 39 ATGTCGATTT .............................. ATTCAATAAAAAAAAATAAGATAAAAAATCTTATTTAAG 351832 30 96.7 36 CTTATTTAAG ............T................. GTCATCTTCTATTTGTTGTATGTATTTTAATACGGT 351898 30 100.0 40 TTAATACGGT .............................. CATATTGCTCTTCCCCATCTGGTTCATCAGTGTAAGCATT 351968 30 100.0 36 TGTAAGCATT .............................. TATTTTTCCAATTGTTCAGGGGAAAGTCCTCCCTTC 352034 30 100.0 37 TCCTCCCTTC .............................. GTGGATTACCAGCTGATATGGGATTAGGTAGTGGATT 352101 30 100.0 39 GTAGTGGATT .............................. GATGAGAGAGTTATTTATGTAAGTGTTAAAGTTGTAGAA 352170 30 100.0 37 AGTTGTAGAA .............................. ATAATAATAGAGATAATACAGTTCCCAAAATGAATAA 352237 30 100.0 41 AAATGAATAA .............................. TTAACTCAACTTTTATTGAAGTTATTTTTATGTTGATTTGT 352308 30 100.0 36 GTTGATTTGT .............................. ACAATAGAGGTAAAAGAGGTTATAGGGTAATATTTG 352374 30 100.0 36 GTAATATTTG .............................. GATTTAATCTGAGTATTTTGTACATTTTGAGGAGCA 352440 30 100.0 TTGAGGAGCA .............................. AGGGGGACTT ========== ====== ====== ====== ========== ============================== 12 30 37 ATTTCCATTCCCCGAGGGATCTGATTTTAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.70,-4.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [51,375] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_000909 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================= ====== 501630 33 100.0 33 TATGGACGGG ................................. AAAGGAGGTAATCTAACGATGAGGGAGGGCAGA 501696 33 97.0 26 GGAGGGCAGA ...............................G. GTGTGTGCGTGTGTTGGGGGAGGCAG 501755 33 100.0 34 GGGGAGGCAG ................................. ATTTCGATAGCTTCCTTGGCATCCTCTGCTTCAA 501822 33 93.9 TCTGCTTCAA ..............................AC. TGATGCC ========== ====== ====== ====== ========== ================================= 4 33 31 GTTAAAATCAGACCTCTTGGAGGATGGAAAGTT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.61%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.60,-3.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [745,189] Score: 0.18/0.18 # # Final direction: F [0.96,0.27 Confidence: MEDIUM] >NC_000909 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 858179 29 96.6 38 AAGATAGTTA .....................T....... TAAAGAGTATCTTTCTCCTACACTGACTCCTAATATCG 858246 29 100.0 40 CCTAATATCG ............................. CTAAATTCTTTTTTTAACTTTTTAAGGTGAGAGGATGTTT 858315 29 100.0 GAGGATGTTT ............................. CAGGGCAATC ========== ====== ====== ====== ========== ============================= 3 29 39 TTTCCATCCTCCAAGAGGTCTGATTTTAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.07%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.60,-3.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [187,498] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_000916 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1472442 30 100.0 36 AATTGGCCAT .............................. GGTGAAAATACTAACACCCGTAGAAGCCCTTGAAGA 1472508 30 100.0 35 CCCTTGAAGA .............................. ATTACAATCGTAAGCATTATGGTGAATCGGCTTGT 1472573 30 100.0 36 ATCGGCTTGT .............................. TGAAAACTACGGAATGGTATAAGAATGGTGAGAGAG 1472639 30 100.0 36 GGTGAGAGAG .............................. GTAAATGCGAACTATTACTATAATAATAACCTTTAT 1472705 30 100.0 39 TAACCTTTAT .............................. ATATTTACAATTCTAATTTGATTTTTATTTCCCATGAAA 1472774 30 100.0 37 TCCCATGAAA .............................. ACTGGAGGAGATGGAAAAGTGCAGCACGAGTGACATC 1472841 30 100.0 37 GAGTGACATC .............................. ATGGAGGTGAAAGGAATGGTAGTGAATGAAAAAATGA 1472908 30 100.0 36 GAAAAAATGA .............................. GAAGCAATGAGCTACGCAGTAGGGTGAGAGAGCAGG 1472974 30 100.0 36 AGAGAGCAGG .............................. TTATCGTGAAATACTTATTCTTAATCGGTTTTAGGT 1473040 30 100.0 40 GGTTTTAGGT .............................. TTTATATATAATTTTAACATATCCACAAAATAGTACCTAT 1473110 30 100.0 36 TAGTACCTAT .............................. TTACAAACATCTCTATGGTTTCCAGTGCCATGACGA 1473176 30 100.0 36 GCCATGACGA .............................. TAAAGCTTCATTTGATTTACCGTCCATTACAAACAT 1473242 30 100.0 37 TTACAAACAT .............................. CCAGGAGAGCATCAATGACATGACCAACCGCCTCAAG 1473309 30 100.0 36 CCGCCTCAAG .............................. TTATGCTCTTAGGAGCATAGCGACGTAGTCATACAA 1473375 30 100.0 37 AGTCATACAA .............................. TTATAAAACCAAGAATGGAAGTAATGAATAGGCCATA 1473442 30 100.0 35 ATAGGCCATA .............................. TGGGATGTCCTCGATAGGCTGCGAGAGAGCGCAGC 1473507 30 100.0 39 AGAGCGCAGC .............................. AAAGGGTGGCGGAGAGTCGGTAGAAACGATGTGCAATGT 1473576 30 100.0 37 TGTGCAATGT .............................. ATCAAGCAAATGGTGATCATTATTTCCAGTACTCTTC 1473643 30 100.0 35 AGTACTCTTC .............................. TTTATTTGGACTGGTTTGCCGTCGAGGAAGAATTC 1473708 30 100.0 32 GGAAGAATTC .............................. TATTGGTCTCTGTCTCATCCACCGTAACGGTG 1473770 30 100.0 37 CGTAACGGTG .............................. TTTTTTATTACCCAATATTTTTCTTCAATTCTTTCCA 1473837 30 100.0 37 ATTCTTTCCA .............................. TGGACTGATTTAAGCCCAATGGGGGCTCTCAGGGCGG 1473904 30 100.0 38 CTCAGGGCGG .............................. ACTGGAAAAAAAGAGTACACCACAATCTACACGTAATA 1473972 30 100.0 32 ACACGTAATA .............................. GAATGCGAGGAGGCTTAAAGCCACATTCAAGG 1474034 30 100.0 32 ACATTCAAGG .............................. TATTGGTCTCTGTCTCATCCACCGTAACGGTG 1474096 30 100.0 37 CGTAACGGTG .............................. TTTTTTATTACCCAATATTTTTCTTCAATTCTTTCCA 1474163 30 100.0 36 ATTCTTTCCA .............................. GCTCAATAAGGGTCGACGTGGCCCCGGAGGCCACGT 1474229 30 100.0 35 GAGGCCACGT .............................. TACTGTGCGATCCACAGCTGACAGTGTAATTAAAA 1474294 30 100.0 37 GTAATTAAAA .............................. TGGACTGATTTAAGCCCAATGGGGGCTCTCAGGGCGG 1474361 30 100.0 38 CTCAGGGCGG .............................. ACTGGAAAAAAAGAGTACACCACAATCTACACGTAATA 1474429 30 100.0 32 ACACGTAATA .............................. GAATGCGAGGAGGCTTAAAGCCACATTCAAGG 1474491 30 100.0 37 ACATTCAAGG .............................. TGAAGCACTGTGTTGGCTCAATGCTGTCTAAGTGCTT 1474558 30 100.0 39 CTAAGTGCTT .............................. GGGAATACCTGAAGAAGATAAACGCATAGAGTTTGCCGA 1474627 30 100.0 36 AGTTTGCCGA .............................. GCTAGTTCATGGCAGATGAGTTCAGCGAGACCATAC 1474693 30 100.0 35 GAGACCATAC .............................. TAGATCACGCCCCCAAGCCACCTTAACCCGTCCGC 1474758 30 100.0 38 ACCCGTCCGC .............................. GTACATTTCGGTGGCGATTTTTTTCATTTCACCACCGA 1474826 30 100.0 37 TCACCACCGA .............................. ATCCGAAACATCTCAGTAGCGATTTTTTTCATTTCGC 1474893 30 100.0 38 TTCATTTCGC .............................. GAGTATGGAAATAGCTATGGATGGTGGTTTTCAATTGA 1474961 30 100.0 TTTCAATTGA .............................. TGGCGATCG ========== ====== ====== ====== ========== ============================== 39 30 36 GTTAAAATCAGACCAAAATGGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.90,-0.80] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [713,525] Score: 0/0.18 # # Final direction: F [4.77,0 Confidence: HIGH] >NC_000916 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1475089 30 100.0 34 TTCTTTCTCA .............................. TTCTATCACCTCTTATTTTTCTCTCTGGAGCCGT 1475153 30 100.0 37 CTGGAGCCGT .............................. CTATTTTTTCTTTGTCCTCTGTGGTTCTTTTGGATTT 1475220 30 100.0 38 TTTTGGATTT .............................. TTCTATTTTTCTTTTCTTTCTTTTGTCTTTCTTTCTAT 1475288 30 100.0 34 TTCTTTCTAT .............................. AAAATAACACTATCTAAATCATCAAAATCATTTA 1475352 30 100.0 37 AAATCATTTA .............................. TTGAGGATTTCATATGCTTCAAAGGGGCTTTTTCCTT 1475419 30 100.0 35 CTTTTTCCTT .............................. GGACACGCGTATAGCCTGAAGACGACCCTCAGCAG 1475484 30 100.0 CCCTCAGCAG .............................. TCATTCTTGG ========== ====== ====== ====== ========== ============================== 7 30 35 GTTAAAATCAGACCAAAATGGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.90,-0.80] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [56.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [3360,2] Score: 0.18/0.18 # # Final direction: F [4.95,0 Confidence: HIGH] >NC_000917 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 148 30 100.0 38 ATTACTGATG .............................. AGCCTTTCAGCCCTAGTGTGAGTGTCAGGTTTACTCTT 216 30 100.0 38 GTTTACTCTT .............................. GTTTGTTAAGGGCTTTGATTTGCTCCTCGGTGGCTCTG 284 30 100.0 37 GGTGGCTCTG .............................. TAAAGCAGTTCACCCCTGTTACTGGTTTAACTGCCTT 351 30 100.0 35 TAACTGCCTT .............................. GTATTTGAATCAATGAAAAGAAATCTTACCTCGTC 416 30 100.0 36 TTACCTCGTC .............................. AGTCTTCTGGATGGGTCACAAGGGAGACATCGAGGC 482 30 100.0 39 ACATCGAGGC .............................. TCAGCAAGGTTACGTCGGAGATCCTCGAAGAGGGTATCA 551 30 100.0 36 GAGGGTATCA .............................. CGAGGATTGCTGCCAAAGAGAGCGCCTCGTTCTTCG 617 30 100.0 38 TCGTTCTTCG .............................. AAAGTGAACATGCTTAAAGAAATGCTGACAGAAATTGA 685 30 100.0 36 CAGAAATTGA .............................. AGCGAGGAAGAGCTTGACGAATTCTTCAAAAGCGGA 751 30 100.0 40 CAAAAGCGGA .............................. TTGCATTTACATCGGCAGAATTGGTCTCGTCGGAAGGCAT 821 30 100.0 42 CGGAAGGCAT .............................. CGGTTCTCTTACGTACTCATGCGAGAAGTGAGACTCGCGTTG 893 30 100.0 38 ACTCGCGTTG .............................. AGCAAGTCGTGAAACTGAGCAGTCAAAACAGATCGTTA 961 30 100.0 35 CAGATCGTTA .............................. TTTTCCCATACAATTACGACTTCGCCGGAAAAAAA 1026 30 100.0 37 CGGAAAAAAA .............................. AGCGAGTTCGACCACGTCGTAGGTCTGCTGTCGGCAA 1093 30 100.0 38 CTGTCGGCAA .............................. TGTTTGAAGTAGTTGAATACACCGTTGTGCTGTTTGTT 1161 30 100.0 39 GCTGTTTGTT .............................. AGAGGGAGTATTAGGGCCATACTGGCCGGAGTTGTGGTT 1230 30 100.0 41 AGTTGTGGTT .............................. ATTCCAAATTGCGGAAAAAGATTCGAGGGCAGTTACTTCCC 1301 30 100.0 39 GTTACTTCCC .............................. ACGTCGTTTATTGCCGTAACGCTAACACCATACTCAAGA 1370 30 100.0 40 ATACTCAAGA .............................. AAAGCCGTCCAGCGATTGTTTTCATCCGCACCGATAATAG 1440 30 100.0 36 CCGATAATAG .............................. GGTTTAGACTTCCAGCAGGTAAGACATTCAAGGTTC 1506 30 100.0 38 TTCAAGGTTC .............................. GAGGTAATAGCTGCGAGGGTCAAGCAGGTTTACGAGAA 1574 30 100.0 39 TTTACGAGAA .............................. GAGCAATATTAGAAGAACTCATGGCCACTGGCGACTTCA 1643 30 100.0 40 GGCGACTTCA .............................. TTACATATCCATTCACAGCACCTATGGCTGCCATCAAAAT 1713 30 100.0 41 CCATCAAAAT .............................. CTTCACAACCAGCCTGACCTCAATCTCTCCTCTCTCTTCGA 1784 30 100.0 37 CTCTCTTCGA .............................. CATGGACATTCAGGCACAGCCAGAGCAAAAGACCTTC 1851 30 100.0 40 AAAGACCTTC .............................. TTCGTTAAGCTTTTCTCTAATTAGATTAACCGTTTTCGTA 1921 30 100.0 36 CGTTTTCGTA .............................. TTTGATGTGAAAACCGCCCCTAAGCTTCCCGTTCGT 1987 30 100.0 39 TCCCGTTCGT .............................. ATCCTCACCGTCGGCGTGTCTTTCCCATTCAATTTCGGC 2056 30 100.0 42 CAATTTCGGC .............................. CATCAGCTTATGCATGTAATAAGCGAAGCTACATAACTGCAC 2128 30 100.0 39 ATAACTGCAC .............................. ATCTATGTAGAGAAGGTATCCGATTTCATAGACTGGAGA 2197 30 100.0 38 AGACTGGAGA .............................. TATTTTTTTAAAAAAATATATAAAAAAGGAGGTGATGC 2265 30 100.0 40 GAGGTGATGC .............................. CTGTTCATCCTGTTCGGAGTGTTGATTTACGCAATTCTCA 2335 30 100.0 38 GCAATTCTCA .............................. TCGCTCTCTTGGTAGGTTACTTTGTCTTTACGGAGGTT 2403 30 100.0 36 TACGGAGGTT .............................. CGGTTTCCTCGCTGATCCGACTCTTCAGCCATCGCT 2469 30 100.0 39 AGCCATCGCT .............................. TAAGCGTCGCTGGGCGTCGCTCGGTGGTGGAACGGGTTA 2538 30 100.0 38 GAACGGGTTA .............................. GCCAGGATAATTGAGCGTGTTGTAGAGTCTGCCGCTGT 2606 30 100.0 38 CTGCCGCTGT .............................. ATTTCTGGTCGTGTTTACAAACTTAACGAACGCTACGA 2674 30 100.0 36 AACGCTACGA .............................. CCAGCATTGTTCCAGCCGCAGCCAAACCGAGAAGGG 2740 30 100.0 36 CCGAGAAGGG .............................. GCCGTTTTTCAGCCTCTTTGCCTTCATCCAGCATTT 2806 30 100.0 38 TCCAGCATTT .............................. CCTCCTTTGGGTGGAGTTCCAATCAGGAACGTGATTGG 2874 30 100.0 39 ACGTGATTGG .............................. AAAGAATGACCGAACACCTTAACCTCTCTATAACCCCAC 2943 30 100.0 39 ATAACCCCAC .............................. CTCTTCCCAACGTCACCCACAGATAACTATCTGGAGATG 3012 30 100.0 35 TCTGGAGATG .............................. GTAACCATAACCTACAAGTGCGGAGTGCCCTTGCA 3077 30 100.0 41 TGCCCTTGCA .............................. TACTGCTCCCAGCACAAGGCAGCGCAGGCGTCGTGGTCTTC 3148 30 100.0 37 CGTGGTCTTC .............................. CCTACGGCCGCAAATCGGACAGAGCTTATCCATCCTG 3215 30 100.0 38 ATCCATCCTG .............................. TTTGCATCTTCACCGGCATTGTCAGCTGCGAACTCTGA 3283 30 100.0 42 CGAACTCTGA .............................. ATAGCTCTCTGTAACTCACTTCTTCCCCATACCATGTTTCTA 3355 30 100.0 38 CATGTTTCTA .............................. AGCATCTTCGTCTTCTTTATCCTCTTCAGGAGCTCTAA 3423 30 100.0 37 GGAGCTCTAA .............................. GAAGTTTGCGTTTGTTCCAGAAGTTTGTAGAGTGCCA 3490 30 100.0 38 TAGAGTGCCA .............................. AATGCTAATCGGATTCTCTGGTCCATCTGCAAGTGGCA 3558 30 100.0 37 GCAAGTGGCA .............................. TGCTTCATCTTTCTCCAACACTTCTACAATCTTGACT 3625 30 100.0 39 AATCTTGACT .............................. AAGACTACGACTCTTGGTAATCCATCGTTGCCTCTAATC 3694 30 100.0 44 GCCTCTAATC .............................. GGAACCCCGTAACTGGCTGCCTTCACGGCTGCGATTACTGCTAC 3768 30 100.0 38 TTACTGCTAC .............................. ATCAAGAGCCCATGCCGTCAGAGAATGCGTTGAGGAGT 3836 30 100.0 40 GTTGAGGAGT .............................. TCTGATTTTTCGGCAACAACAAACCTGAACTCAGAATTGC 3906 30 100.0 39 TCAGAATTGC .............................. CCTTATCTCATCCTCAGCACCATAAGGCATTTGACCCTT 3975 30 100.0 38 TTTGACCCTT .............................. CGAGACATTAACACAATTTATTGGGCATGTCCTGACGG 4043 30 100.0 38 GTCCTGACGG .............................. GCAGACGACGTACACTACTGGGGCGTTGTCAAGGAACA 4111 30 100.0 43 TCAAGGAACA .............................. TAAGAACATCTCATAAACTTGTGTTGGACTCGGTAGCTCCCAA 4184 30 100.0 TAGCTCCCAA .............................. GCAATGGCGA ========== ====== ====== ====== ========== ============================== 60 30 38 GTTGAAATCAGACCAAAATGGGATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.90,-0.80] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [149,78] Score: 0/0.18 # # Final direction: F [4.77,0 Confidence: HIGH] >NC_000916 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 983373 30 100.0 35 ACGCATTCAA .............................. TATCTTATGTCCGTTATTTTTTACCTACGTTGCAG 983438 30 100.0 36 TACGTTGCAG .............................. CAACAATAAAATTCAGGGGGACTGAGTACATAAAAG 983504 30 100.0 37 TACATAAAAG .............................. GATTGAAATTACTGAGGATGGTCTCTACTTCCACCTT 983571 30 100.0 37 CTTCCACCTT .............................. ACGGCGTCTGTGACGTCGTTAGAGAGGATGGAGTCGT 983638 30 100.0 37 ATGGAGTCGT .............................. GGTTTTGTGTGGGTGTGCATTCTGGTTGTGGTTGGTC 983705 30 100.0 38 GTGGTTGGTC .............................. AAGCGCCGGGCAGACAGCACACATACAAGACTTCACAA 983773 30 100.0 38 GACTTCACAA .............................. TTTCACGATGACTCTGTTGAGTTCATCGTATTCTTTCC 983841 30 100.0 36 TATTCTTTCC .............................. TGATGTTGGGAAGGTTTGGCCATCTGAATGATTTGA 983907 30 100.0 35 AATGATTTGA .............................. TCAACATGGGGACATACGTCCAGGGGGACAGACGC 983972 30 100.0 37 GGACAGACGC .............................. TCACCCTCCAGACTAGCTCATCAATGTACCCATTACC 984039 30 100.0 35 ACCCATTACC .............................. GAAATACAACCCCACACGCCAGTCCATCCTCTTTC 984104 30 100.0 37 ATCCTCTTTC .............................. CTGTCTGCCCCTATTGTTTTGATCATGTTTGTGCATG 984171 30 100.0 37 TTTGTGCATG .............................. CCTTTAGAACTAAAAAAATAACAAAATAAAAAAAGAC 984238 30 100.0 36 AAAAAAAGAC .............................. GGGTTCTCATAGATGGGCGACAGAAAGACATGAAAA 984304 30 100.0 37 GACATGAAAA .............................. CCGTTACTCATGCATTATTAGTGAGAAACAACTCTTT 984371 30 100.0 37 ACAACTCTTT .............................. GATTGAAATTACTGAGGATGGTCTCTACTTCCACCTT 984438 30 100.0 37 CTTCCACCTT .............................. GGTCGGTGCCCGGGTCGGGTCGGTGCCCGGGTCGGGT 984505 30 100.0 38 CGGGTCGGGT .............................. TATCATCACGCTTGAAGAGTATAATAAAGTTGTTAAGA 984573 30 100.0 36 GTTGTTAAGA .............................. TGTTCACTATTTGGGTCATTTATGGGTACTATTTTG 984639 30 100.0 38 TACTATTTTG .............................. TATGAGGGCTGTGCATGCACGGATCAGCAAGGAAACAA 984707 30 100.0 37 AAGGAAACAA .............................. TCAGATTCTTTCTGACAATAATATGAGGTGATATAAA 984774 30 100.0 36 GTGATATAAA .............................. AGTATGTGCAGTATCCTCTCTATGTCCCCTTCATTC 984840 30 100.0 37 CCCTTCATTC .............................. CCTATATTATGTCCATTATTTTTCATTTACGCTGCAG 984907 30 100.0 37 TACGCTGCAG .............................. AATATTGAAACGTTCAAGGACATGTTGAAGAGGTATG 984974 30 100.0 38 AAGAGGTATG .............................. GAGGAAACGTTTACCCTTGAAGGGCGTAAGGCCTGATA 985042 30 100.0 37 AGGCCTGATA .............................. TTTCGGTGGGGGGTAGGTGGGGGGTGTGAAGGTAGAT 985109 30 100.0 38 GAAGGTAGAT .............................. GTATCCATGACTCCTGATGCCCTGGCACGTCGAAGTCA 985177 30 100.0 36 GTCGAAGTCA .............................. AGTATGTGCAGTATCCTCTCTATGTCCCCTTCATTC 985243 30 100.0 37 CCCTTCATTC .............................. GGTTTAGGGACTGTGAGATCGTTGTTGAACATAATAA 985310 30 100.0 36 AACATAATAA .............................. TCGGTGGGGGTAGGTGGGGGTATAATCAGAACAAAT 985376 30 100.0 37 CAGAACAAAT .............................. GGTTTAGGGACTGTGAGATCGTTGTTGAACATAATAA 985443 30 100.0 36 AACATAATAA .............................. TCGGTGGGGGTAGGTGGGGGTATAATCAGAACAAAT 985509 30 100.0 36 CAGAACAAAT .............................. AATATAGTGCAAATGATTCTAGAAAATAGTAAAATA 985575 30 100.0 36 TAGTAAAATA .............................. TAAAATGAAAAAAAGATTCAAAAAAACATGCAAATG 985641 30 100.0 36 CATGCAAATG .............................. ACAAAGTGCCCCGCATGTCGTGAAAAGATGAAGAAA 985707 30 100.0 36 GATGAAGAAA .............................. CGTGGAGGGCCTCGACTACTACAAGGCTATCAGGTT 985773 30 100.0 37 CTATCAGGTT .............................. TGAATCTGACATGAACTGCTATTGCTGTAACCGATAT 985840 30 100.0 35 TAACCGATAT .............................. GCTAAAAAGGAGTACCTGCAACGGAAAGTACCGGT 985905 30 100.0 37 AAGTACCGGT .............................. CTTTTAAATCCTCTAAAAACTGTTCTAAACACCAATC 985972 30 100.0 36 AACACCAATC .............................. AACTTCACAGAAAAGCCTCCATGGAGCAAGTGCTCT 986038 30 100.0 37 CAAGTGCTCT .............................. AAGAGGTGAAAGATATGAAAATAAAAGTAAAAATAGA 986105 30 100.0 37 TAAAAATAGA .............................. CTCCTCACTACCACTAAGATCATATGCTGCCGCATAA 986172 30 100.0 36 TGCCGCATAA .............................. AGGAGAAACTGGATAGGAGGTGAATGAGATGATTGA 986238 30 100.0 36 AGATGATTGA .............................. ATGTTTTTGAGGTCGTATAGCACTATGATCGCACAA 986304 30 100.0 38 GATCGCACAA .............................. GATTTTGACGGTGAGTACAATCTCTGCTGTCAGAACTG 986372 30 100.0 36 GTCAGAACTG .............................. AGGTTTATGGGTTCTAAACAATAGAACCCCTGATTA 986438 30 100.0 37 CCCCTGATTA .............................. ATAGAATGAAGAGGAAATACAAGAAAACATGCAAATG 986505 30 100.0 39 CATGCAAATG .............................. GGGTTAATAAAATCGTCGATGATGTTGTAGACAAAATCA 986574 30 100.0 37 GACAAAATCA .............................. ATGGATGAGGAAGGTGACGGCCCTGGGAAGTACAGGG 986641 30 100.0 38 AAGTACAGGG .............................. ACATACCCTTCTTCATATAAGAACTGCACATAGTCAAT 986709 30 100.0 42 CATAGTCAAT .............................. CGAGAAGGGTGAGGACGTCCTTGAGGGCGCATACGATGTCCT 986781 30 100.0 37 ACGATGTCCT .............................. GCTTAGTCGTTATAATCGAGTCGATAAGATTCTTTGA 986848 30 100.0 36 GATTCTTTGA .............................. CCGTGCTGAGGATGTCTTCGTGTACCCGGTCCTTCT 986914 30 100.0 38 CGGTCCTTCT .............................. CTGTAGCGAATTACTCCGCTGAGTTCTCATCCTTTGAT 986982 30 100.0 37 ATCCTTTGAT .............................. CCATTTTGTTGCCTCATTTAAACTCATCTTTAAAATT 987049 30 100.0 37 CTTTAAAATT .............................. GCAGAGGAAAACGAAGAAAAGGAGAAAATAGAAGCCA 987116 30 100.0 37 ATAGAAGCCA .............................. CTATCTAAGTAGTATGAGTCTTCAAAGAGGATATTGA 987183 30 100.0 36 AGGATATTGA .............................. CAGGCTTAGTGTGGGTTTTATTGAATCTGTACTTAT 987249 30 100.0 36 CTGTACTTAT .............................. CCGTGCTGAGGATGTCTTCGTGTACCCGGTCCTTCT 987315 30 100.0 38 CGGTCCTTCT .............................. CTGTAGCGAATTACTCCGCTGAGTTCTCATCCTTTGAT 987383 30 100.0 37 ATCCTTTGAT .............................. CCATTTTGTTGCCTCATTTAAACTCATCTTTAAAATT 987450 30 100.0 37 CTTTAAAATT .............................. GCAGAGGAAAACGAAGAAAAGGAGAAAATAGAAGCCA 987517 30 100.0 37 ATAGAAGCCA .............................. CTATCTAAGTAGTATGAGTCTTCAAAGAGGATATTGA 987584 30 100.0 36 AGGATATTGA .............................. CAGGCTTAGTGTGGGTTTTATTGAATCTGTACTTAT 987650 30 100.0 36 CTGTACTTAT .............................. AGGTGAGAAAAAATGAAAGGAAAAGAAGTTGAGAAA 987716 30 100.0 38 AGTTGAGAAA .............................. TGGCTTGGCCAGGCTGGGGTCCAGGCCACCCTCATCGC 987784 30 100.0 37 CCCTCATCGC .............................. ACTTATTTATCGATAAAGTTCTACTCACATGTTTAGT 987851 30 100.0 36 CATGTTTAGT .............................. GGGGAGGACCTCATAAAATTTTTGGATTAAAATGTG 987917 30 100.0 32 TTAAAATGTG .............................. TTTCCCTGAGATGATGTCCTTGATTGTGCTGC 987979 30 100.0 38 ATTGTGCTGC .............................. ATATACATCATATATTAATAAAATAAAAAAAATCAATA 988047 30 100.0 36 AAAATCAATA .............................. GAGTTCATTGTACTCATTGATCGTCTCTTCATCCCC 988113 30 100.0 36 CTTCATCCCC .............................. TGGATTATTGGGACTTACATGCGACAGATTTTTATA 988179 30 100.0 37 GATTTTTATA .............................. GGATCTGAAAATAAAGAAAGCTTCAAATCAAAAAATA 988246 30 100.0 36 TCAAAAAATA .............................. CTTCTAGCAAGAGACATTGACGATATACACAAGTAC 988312 30 100.0 37 ACACAAGTAC .............................. CGGGGAGAGTCTGACATTCTTGAAGTAGAACCTCCCC 988379 30 100.0 36 GAACCTCCCC .............................. TCACACTGTACCCGAACTTCTCCGCGACTTTCTTTA 988445 30 100.0 37 ACTTTCTTTA .............................. AGAGGTTATGAAATCAGTAATAGCCTCAAGGAGTAAG 988512 30 100.0 36 AAGGAGTAAG .............................. TAAAAGTAACCTATAACAATTACCTATGGCTCATAA 988578 30 100.0 38 TGGCTCATAA .............................. CCTCAGTAATGTAATAATCGATATAGCAAGTTGCGATG 988646 30 100.0 37 AGTTGCGATG .............................. ACGTAACAGTATATACTGTCCAAAATGTGCCGCAGAA 988713 30 100.0 34 TGCCGCAGAA .............................. CTATAGGGTCATCCTCGAGGACAGCGCCCGCTTG 988777 30 100.0 36 CGCCCGCTTG .............................. GGCTCGGCCAGGCAGGGGTGGAAATGGAACTCGTCG 988843 30 100.0 37 GAACTCGTCG .............................. TATGACGCCCTCAAAGTCTTTTTCCCGTGCGGCCTCG 988910 30 100.0 36 TGCGGCCTCG .............................. CATGTCATGACCCGTGCCATGATCCGCCGATCAAAA 988976 30 100.0 37 CCGATCAAAA .............................. TCGAATGCCTATTAAGCCTGTATTCAGCATTAGAAGA 989043 30 100.0 35 CATTAGAAGA .............................. AGGCCTGGTTCATGGTCGAGGGTCTCCTTGCTTAT 989108 30 100.0 36 CCTTGCTTAT .............................. TGTTCACTATTTGGGTCATTTATGGGTACTATTTTG 989174 30 100.0 38 TACTATTTTG .............................. TATGAGGGCTGTGCATGCACGGATCAGCAAGGAAACAA 989242 30 100.0 37 AAGGAAACAA .............................. TCAGATTCTTTCTGACAATAATATGAGGTGATATAAA 989309 30 100.0 36 GTGATATAAA .............................. CATATAACGAAATTAAGTCAAATTCGTTTCATTAGT 989375 30 100.0 34 TTTCATTAGT .............................. TCAGGTTGAGGTTTCAGGTTGAGGTTTCAGGTTG 989439 30 100.0 36 TTTCAGGTTG .............................. GGATGATCGGGGTGGGTATGTTCATGCATGGAAATC 989505 30 100.0 36 CATGGAAATC .............................. TGAATACCTGTTCCTCTTCGTATTCCTCATCGCAAC 989571 30 100.0 36 TCATCGCAAC .............................. CCTTTTTACTCTGTTTAGCCCTTTTTACTGCACAAT 989637 30 100.0 36 ACTGCACAAT .............................. TTACTTTTATAAATAATATCTGAACTTTTTCACCTT 989703 30 100.0 37 TTTTCACCTT .............................. AAGGCGGTTAAGCACACTCAACGCTCTGATTGAGTGT 989770 30 100.0 37 GATTGAGTGT .............................. TCACAGTCAGCTCCACTGAGTCCATGCTTAGAGCCTC 989837 30 100.0 35 TTAGAGCCTC .............................. TTAATTCCAATATGGGCCGATATCTGCCCTCTTTT 989902 30 100.0 37 GCCCTCTTTT .............................. CCGGAACACCAGGTCCTGGGCTTGTGGGTTCTGCTCG 989969 30 100.0 32 GTTCTGCTCG .............................. CATCTGTTTCACCTCTTCTTTTTTTCTTTGTG 990031 30 100.0 34 TTTCTTTGTG .............................. TTTATTAATTTAGTATTGGTTGTTTGGTTAATTC 990095 30 100.0 36 TGGTTAATTC .............................. ATATATACCATATTGAACATTGATTTTAGCGTTTTT 990161 30 100.0 37 TAGCGTTTTT .............................. CCAGCAGAAACAGTAATAGTCAAATATTATAAGCACA 990228 30 100.0 37 TATAAGCACA .............................. CTTGATAAGGGTAGTAAACGAACCCGATAGTGAATAT 990295 30 100.0 35 TAGTGAATAT .............................. CCAAATAAAACGTTAATATCGATTTAATTCCAATA 990360 30 100.0 37 AATTCCAATA .............................. CGTTTCAACTAATGAAACTGTCTTAAATTGCTTATTT 990427 30 100.0 37 TTGCTTATTT .............................. TCGCAGAACATCATACACATCAGGTAGTCTATACAGT 990494 30 100.0 34 TCTATACAGT .............................. TGATGGTTTTGATGTTTTGTGTAAAATTCGTGAG 990558 30 100.0 37 AATTCGTGAG .............................. GAAGTCACACTGAATACGAAGAAATACAAGACACAGT 990625 30 100.0 37 AAGACACAGT .............................. CCGGTCCTTGACGGGAAAATCTACAGGGCCACAATAG 990692 30 100.0 37 GCCACAATAG .............................. ACACAGTACAATTATTCGGAATAATACACGCACAATG 990759 30 100.0 37 ACGCACAATG .............................. ATGAACATGCAGATAAAAGATGATATAATAGAAAAAT 990826 30 100.0 32 ATAGAAAAAT .............................. AAGTATTTTTCTGAATTCACGGATTGCTTCGC 990888 30 100.0 37 ATTGCTTCGC .............................. TATAATCGAATATTGTTGCGTATTGTGTTGTGTTTTT 990955 30 100.0 40 TTGTGTTTTT .............................. AGGTTCTTGTGGGTTATTGTTGTCCTAGTCCAGTTTACAC 991025 30 100.0 36 CAGTTTACAC .............................. CTAAAGTTTCTCTGTAGTCCACATCCCCTTTTTTCA 991091 30 100.0 37 CCTTTTTTCA .............................. TGAGGTGACAAGTATCAGGTTCTCACAGTGTTTCATG 991158 30 100.0 38 GTGTTTCATG .............................. ACCGATGGTACCTCAGGATACTATTCCCACCACTCACC 991226 30 100.0 36 ACCACTCACC .............................. TTGAAGACTCATACTACTTAGACAGTTTTGAATTCG 991292 30 100.0 37 TTTGAATTCG .............................. ATCGAGGAATTCTATTTTATCCTCACCAGGATAGCGG 991359 30 100.0 36 AGGATAGCGG .............................. ATGTTTTCCGTTATACTATAGTGCGTTTTGGTATTG 991425 30 100.0 37 TTTGGTATTG .............................. CCATACCACACATTTGGATTGTAGGTGGTTGATGTTA 991492 30 100.0 33 GTTGATGTTA .............................. TAGCGGTTAATGTCGTCGATGTCCCTTGTTATT 991555 30 100.0 CCTTGTTATT .............................. AGGGCGGATT ========== ====== ====== ====== ========== ============================== 124 30 36 ATTTCAATCCCATTTTGGTCTGATTTTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.80,-0.90] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [70.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [68,887] Score: 0.18/0.18 # # Final direction: R [0.27,4.68 Confidence: HIGH] >NC_000917 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 398369 30 100.0 38 TACACGTCCA .............................. TTACTGTGTTCCGAGCTTTCAGAGGCAGGCCAAGAGCT 398437 30 96.7 39 GCCAAGAGCT ....T......................... CTTCATGTGCTCTCAACCAGTAGTATATTGTCCTAACTG 398506 30 100.0 37 GTCCTAACTG .............................. AGGCCCGGAATCAACAGGAACACCTGATACACGAATA 398573 30 100.0 38 TACACGAATA .............................. ATGCGGAATTAACAGCATTATCAGGAAAGCGATTATGA 398641 30 100.0 37 GCGATTATGA .............................. GGGGGGAGGATGAGAGCTCTGTTTGCCGTTCTGGTGT 398708 30 100.0 38 GTTCTGGTGT .............................. TTTCTGGCATGGGGAGTTAGCAGGAACGTGGCAGGCTA 398776 30 100.0 37 TGGCAGGCTA .............................. GTTAAGCTCTCGGTCGGGCTCTTTGCTCGGTAGAACC 398843 30 100.0 38 CGGTAGAACC .............................. GACTGTAATCTCAACTCCTCCGCCATCTTCTGAAACTC 398911 30 100.0 41 TCTGAAACTC .............................. CACATTGACGTGGCGGATTAAGCGCTTGTGGAAAGTGTTTT 398982 30 100.0 36 AAAGTGTTTT .............................. GATGAAGCCATATTTGTCGCATTATTCCACGACGTC 399048 30 100.0 38 CCACGACGTC .............................. CTTCTCAACTATCGGTTGTTTGACATTTGTATCCTTTC 399116 30 100.0 37 GTATCCTTTC .............................. GAAGTTCCACATTCCCGTGACTTTCAAGAAGATTATG 399183 30 100.0 38 GAAGATTATG .............................. ACAATCTGATCGAACAGATTACCAGTCAAAGCAACTCC 399251 30 100.0 42 AAGCAACTCC .............................. TTGCTGAGCTCAGAGGCTTTACCGCTAACACTCGCCTTAACG 399323 30 100.0 42 CGCCTTAACG .............................. TTGTCAGTTCTCTTCTGATCGATTCGGCCAGAGTGGTATATT 399395 30 100.0 40 GTGGTATATT .............................. CTGAGTCTGCTTACTCCAAGATTTATGTCTCTGTATGTCT 399465 30 100.0 37 CTGTATGTCT .............................. CCGGCAAAACAAGATACCACGATTTCTTCCCATGCCA 399532 30 100.0 37 TCCCATGCCA .............................. CTCCGACTATCACCCAGTCAAACCCCTCGAAGTCCGA 399599 30 100.0 36 CGAAGTCCGA .............................. AGGTGCCTTGTAACCTTTCTATTTTTTGATTGCTCT 399665 30 100.0 37 TGATTGCTCT .............................. TACCGAGCTGCTCAGCGTTGGGATGGAGTATTTCACG 399732 30 100.0 35 GTATTTCACG .............................. CTGCGGGGGAGCAGCCCATCGCCGAATACGACAAC 399797 30 100.0 36 ATACGACAAC .............................. TACTCCCCTGAAACCTCCTCAGAGCCTTCGTGTCCT 399863 30 100.0 38 TTCGTGTCCT .............................. CGTTCGGCGTCGTAGAGGAAGAGAAGAGGGAGTCCAGA 399931 30 100.0 41 GGAGTCCAGA .............................. GAGGCGTTCATCAAGGAGGCTTACCGAGTTCTAAAAAAAGA 400002 30 100.0 41 TAAAAAAAGA .............................. AGTCGTTTTGAAAACCACCGAGCCGTCAGCGGTTGCGACCC 400073 30 100.0 37 GTTGCGACCC .............................. TAAGATCCTGAAGCCAGATCCAGACCTCAAAGAAGGC 400140 30 100.0 40 CAAAGAAGGC .............................. CAATCTCGTCGTCAGCAATCGAGATATTAGCAGTTCCCGA 400210 30 100.0 38 CAGTTCCCGA .............................. TATTTAGCCCTCTTAACGACCCGTTCTTCGCTGTTTAT 400278 30 100.0 41 CGCTGTTTAT .............................. TTTAAGAACCTTGAATGTCTTACCTGCTGGAAGTCTAAACC 400349 30 100.0 44 AGTCTAAACC .............................. TCAGCCACGTCGTTGAACCGATGCTCGCAGACTTCAACGGCTCC 400423 30 100.0 37 CAACGGCTCC .............................. TCCGTAACTATGCTATTGTTCTCAAGCAAATTATACT 400490 30 100.0 36 AAATTATACT .............................. CAGGAGGAATGATATGTTTATTGGACAAAGACAGGT 400556 30 100.0 42 AAAGACAGGT .............................. ATCGCCAATTGCCTCAACACTCACTTTGCCATAGCAATACAA 400628 30 100.0 38 AGCAATACAA .............................. TTCGGGGGATTTGATGAGTTGCTTCTCCTCTTGCCCTT 400696 30 100.0 35 TCTTGCCCTT .............................. TCCCCTCTGGAGTTCGTGAGGTATGCCTCCTTTAT 400761 30 100.0 36 CCTCCTTTAT .............................. GGCCGAGCTGAAGCTGCTCTATGTCGGAGAGTTCCA 400827 30 100.0 36 GAGAGTTCCA .............................. TAACGAATCTCAAAGCCCTCGCATTGGAAAGGGTCG 400893 30 100.0 36 GAAAGGGTCG .............................. CAAGTACAGACTCTCGAAGCCGCCCGTAAAATCGCT 400959 30 100.0 37 TAAAATCGCT .............................. AAACCCCCCTCTTGGTGGAGTTGGCAAAGATTATGTC 401026 30 100.0 37 AGATTATGTC .............................. TCACGACGCTCCCTAACGGTAAGGCAATAGTTAAAAG 401093 30 100.0 36 TAGTTAAAAG .............................. TAGGGCAACAGTTGTTCGATCTCCTCTCTCGTTAAG 401159 30 100.0 36 TCTCGTTAAG .............................. TGTTCAATCAAGTCAAAACGTATTACTCTCAAAGCG 401225 30 100.0 37 TCTCAAAGCG .............................. CATTAACAGCTCTCAGAACGATTTGGGACAGAACAAT 401292 30 100.0 38 ACAGAACAAT .............................. TTGAACTCCACCTCTGGCAACAGCGGCTGCTATTACTG 401360 30 100.0 38 GCTATTACTG .............................. CCTTGATCGAGGGAGAGAAGAACCCTCGAGTCGTCGTC 401428 30 100.0 37 AGTCGTCGTC .............................. TCAAAAACGTTTTGGAGAGTAGTTCTCGCACTTGCTG 401495 30 100.0 36 GCACTTGCTG .............................. CGCCTTGCTGAAAGCTCTAAGCACCACTTCGGCAAT 401561 30 100.0 CTTCGGCAAT .............................. CATCAGTAAT ========== ====== ====== ====== ========== ============================== 48 30 37 CTTTCAATCCCATTTTGGTCTGATTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.80,-0.90] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [63.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [259,427] Score: 0/0.18 # # Final direction: R [0,5.18 Confidence: HIGH] >NC_000917 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1690930 37 100.0 38 TTTAGGGAGG ..................................... CTATTCTCCAAATAAAATTATATAACGCATTAACATCA 1691005 37 97.3 37 ATTAACATCA A.................................... CAGGAGGGACCGGAAACACACGGTTGAAGGGGAACGC 1691079 37 100.0 38 AGGGGAACGC ..................................... TCTATAACTCCTATACGGTCAACATTGTAACCTGGGTT 1691154 37 100.0 39 AACCTGGGTT ..................................... TCTCGCTTGCCCTGATGAAATCGGATGGCTTTGCGTCCA 1691230 37 100.0 36 TTTGCGTCCA ..................................... ATCTTTTGCACTTCCTCCTTAACCTTCTTAATCTCC 1691303 37 100.0 39 CTTAATCTCC ..................................... GCTCTGCAGGGCCAGGGTAAGACAATTGCTGACATAATT 1691379 37 100.0 53 TGACATAATT ..................................... CTTCAGGTAACCCCTGAACTAAGACCTACTCGGACAGGATTAAGCTGCCGTAT 1691469 37 59.5 36 GCTGCCGTAT ---------------...................... CTTCAGGTAACCCCTGCACAATTTCGGCCTTTTTCT 1691542 37 100.0 38 GCCTTTTTCT ..................................... GTCTAACAGGCACAGGAGAACACATTGCACCCTTGCAA 1691617 37 100.0 39 ACCCTTGCAA ..................................... CCTTCAATATCACTGTCCAGTTTCTTGAAGCACACTGGG 1691693 37 100.0 39 GCACACTGGG ..................................... ATGTCAACATGTTCATGCCTGCTTCAAAGCCGGATTTGG 1691769 37 100.0 37 CCGGATTTGG ..................................... TTTGGACTATTTCGCCGCAATCTGCACAGACTACTTC 1691843 37 100.0 35 AGACTACTTC ..................................... GTCTCGCTCAGGTCGGTTAAGGCATCGTTCATCTC 1691915 37 97.3 41 CGTTCATCTC C.................................... AACGTCGTGCTGAACTTAGGAATAGTGATGTCCAACTATCT 1691993 37 100.0 37 CCAACTATCT ..................................... GAAATCGCTGTATTCATTTGGTTTTTTGAATTGGAAA 1692067 37 100.0 37 GAATTGGAAA ..................................... AAATCTACACCGTTTATTTTAACCGCCTTCATAACAA 1692141 37 100.0 36 TTCATAACAA ..................................... CAAGCTGTTCTGGTGGCAACGATGCGAGTAAATTCT 1692214 37 100.0 38 AGTAAATTCT ..................................... ATATACTCCTTACCCCCTATCTTCTTGCTTGAAATTGC 1692289 37 100.0 38 TTGAAATTGC ..................................... TCATCCTCTCGTACAGCGTCCTCGTTGAAATGCCGAGA 1692364 37 100.0 38 AATGCCGAGA ..................................... TCCCTCTCCCCACTCTCCATATCCTCGATAACGCTGAG 1692439 37 100.0 39 TAACGCTGAG ..................................... ATTATCAGAGGTGTTGTAATCAAGGACGAGGAGCTGGAT 1692515 37 100.0 37 GGAGCTGGAT ..................................... ATATCAGCTCTTTTGTGAACTCATCCGTATAGTATGT 1692589 37 100.0 38 TATAGTATGT ..................................... AATATCTGATTTATCAGGGCGATGCTTATCTCGGAGAA 1692664 37 100.0 39 TCTCGGAGAA ..................................... AACTGATACCACAACTGGTGCACCAACTGAGGTTGCCGC 1692740 37 100.0 37 AGGTTGCCGC ..................................... CAGTAAACATTGACGGCCAAATTTATCAGGGAGACGT 1692814 37 100.0 38 AGGGAGACGT ..................................... ATAAATTCCTGATACATATTATTTGAATCAGAACCCAC 1692889 37 100.0 38 CAGAACCCAC ..................................... ATTTTATCTGCATCTCCACACTACCTCTGCAGGAAGCT 1692964 37 100.0 39 GCAGGAAGCT ..................................... CAATAATCTCATCATTGCCTGGAATTTCCGAAGTTAGGG 1693040 37 100.0 36 GAAGTTAGGG ..................................... TGCAGCCACCAAGTTTGGTGACTTGGCAACCATCTT 1693113 37 100.0 38 CAACCATCTT ..................................... GATACATGCAAAATATCTTGAGTGAGGTGGTTTGATGG 1693188 37 100.0 37 GGTTTGATGG ..................................... AATGCATCAGATTCATACTCAAGAACCTTCTTAACAA 1693262 37 100.0 38 TTCTTAACAA ..................................... ATATTTTCGTATCCTTGAGAGTATCAGCGATCGATTCG 1693337 37 100.0 35 GATCGATTCG ..................................... TCATATCACCTGATGAAATTCATCCTTTTCCTTTA 1693409 37 100.0 38 TTTTCCTTTA ..................................... AATCACGACCCATTCATATCACCTCTTCTCCAAACCAA 1693484 37 100.0 38 TCCAAACCAA ..................................... TAAATGCTTTCTCACTTCCCTCTTTCTCATATATCTCT 1693559 37 100.0 36 ATATATCTCT ..................................... GAGCTATCAGCAGATGGGCGAGAGTTTAGGCGGCTT 1693632 37 100.0 39 TAGGCGGCTT ..................................... TGCAAAATAGGGGTGGTAGTAATGCGGTATAATTTCAGC 1693708 37 100.0 38 TAATTTCAGC ..................................... ATGCAAAAGAGAAGTTCGGGTAGTGGTAGTGGGGAAGG 1693783 37 100.0 37 GTGGGGAAGG ..................................... GTTGCTTGGCCTGCCATCTGAGTCATATGCCCCATCC 1693857 37 100.0 38 TGCCCCATCC ..................................... ATGTCGTTGAACTGGGCTTGGATTTCTCTTATAATCGG 1693932 37 100.0 38 TTATAATCGG ..................................... CCCTCGAAGCGGGCCTGCTGCTTGAACCTTACGGTTGT 1694007 37 100.0 39 TTACGGTTGT ..................................... ACTGCAGGGGTGTGGACACAAGTGGACCGCAACAGAGGT 1694083 37 100.0 CAACAGAGGT ..................................... CAAGTCTTCG ========== ====== ====== ====== ========== ===================================== 43 37 38 GTAAGAAAGGGAGGCTCCTGAAAATGGAGATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [344,346] Score: 0/0.18 # # Final direction: F [4.87,0.41 Confidence: HIGH] >NC_000918 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 1226627 31 100.0 36 GACACGCAGG ............................... AGAACAATAAGAGAGCCGATTGATGAGAACGCAGAC 1226694 31 96.8 36 GAACGCAGAC ..............................A GATATGATACACCTGAAACATTCTTTTACATGGACC 1226761 31 100.0 TACATGGACC ............................... CGGCGGATATA ========== ====== ====== ====== ========== =============================== 3 31 36 GTTTCTAATGTACCGTAGAGGAGTTGAAACC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.06%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.40,-0.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [283,97] Score: 0.18/0.18 # # Final direction: F [1.23,0 Confidence: HIGH] >NC_000961 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1117872 30 100.0 36 GTCCCAATAT .............................. AATCGTATGAGGTTCCTGCAGTTACGTCGTGAGTGA 1117938 30 100.0 37 TCGTGAGTGA .............................. AAACTTCCTATATCGCCAGCAATATCAATCACAATTT 1118005 30 100.0 37 ATCACAATTT .............................. GCAGCCCCTGCCTTTCCAGGTGCAGCTGCCCAGTCAG 1118072 30 100.0 35 GCCCAGTCAG .............................. GTGGTCATGGTCTGGCGATGATGTTCCACTTTTAA 1118137 30 100.0 35 CCACTTTTAA .............................. AGTAGCCCAATTGGAGCGCGATTATGACTATGCTT 1118202 30 100.0 39 GACTATGCTT .............................. TCGCCACCAAGCACTCCATCTCCTTGATAGTCCAGCCCT 1118271 30 100.0 37 GTCCAGCCCT .............................. GATTCTTAGTTCATTAGCCCCAACCTGCCACTCTTGT 1118338 30 100.0 36 CCACTCTTGT .............................. TAGAACAAATCAAGGAACAACTAAAGAACCTATCCC 1118404 30 100.0 39 AACCTATCCC .............................. CTGGGGTTAAAAGACAAGTTCAACCTCAGCAAAAATGTC 1118473 30 100.0 37 CAAAAATGTC .............................. GGATGAACTGAAGTTTCTACTGAGCGAGCTCATAAAG 1118540 30 100.0 37 GCTCATAAAG .............................. CATCCGCAGGCTTCACGTACCAGGAGAACCTGTTCGT 1118607 30 100.0 36 ACCTGTTCGT .............................. ATATTATATACGCTGAACCAGTTTGTGAATGACGCT 1118673 30 100.0 37 GAATGACGCT .............................. TTGGATGTCATAAGATTTACGGACTTCACACCGAGTA 1118740 30 100.0 37 ACACCGAGTA .............................. TATCCAGTCCACGACCTTTATGTGTCCCGTATCCTGT 1118807 30 100.0 37 CGTATCCTGT .............................. ACTTCTCAATTCCACGTGCCTCTACAAATGGACAAGC 1118874 30 100.0 37 ATGGACAAGC .............................. CCACAACCTCTGAACGAATTATTTCTCCAGCAGAAAC 1118941 30 100.0 CAGCAGAAAC .............................. AGGAGCCAAT ========== ====== ====== ====== ========== ============================== 17 30 36 CTTTCAATTCTATTTTAGTCTTATTGGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:73.33%AT] # Reference repeat match suggestion: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [65.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [89,485] Score: 0.18/0.18 # # Final direction: R [0,5.45 Confidence: HIGH] >NC_000961 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 994360 29 100.0 37 ATTGGCTCCT ............................. CTTCTGGAGTGCAAAGTTTGGAAAAGGCTTGAATGGT 994426 29 100.0 34 CTTGAATGGT ............................. CAGGCTTTTATTGAGCGTTGGTTTGTTATTTTTA 994489 29 100.0 38 GTTATTTTTA ............................. CCAGTTTAAGCTTAACCTCCCACCTGTGAACGTTGAGA 994556 29 96.6 38 AACGTTGAGA .....................G....... CTTCACGGCTGGTTGGAGGGTACTAGTCTATGATATGC 994623 29 100.0 38 TATGATATGC ............................. CTGGAGCGATGGCTCTCGCACTCGGTCTCTTGTTCAGC 994690 29 100.0 37 CTTGTTCAGC ............................. CCATAGCTAGGAATCTTGGCTTTCTCTGGAGAAGGAG 994756 29 93.1 GGAGAAGGAG ..................A.........T TGAAAGGCA ========== ====== ====== ====== ========== ============================= 7 29 37 GTTCCAATAAGACTAAAATAGAATTGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.86%AT] # Reference repeat match suggestion: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [611,47] Score: 0.18/0.18 # # Final direction: F [5.86,0 Confidence: HIGH] >NC_000918 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1379598 30 100.0 38 NNNNNNNNNN A.AG.TT..T.CAC................ AAAGAAAATCCAAGAAATGTCCACGCCCTCCGAAGTCA 1379666 30 100.0 37 NNNNNNNNNN .............................. TTATTTAGCATTCAAAAAAGGAGTTCTTGTAAATACA 1379733 30 100.0 36 NNNNNNNNNN .............................. AAGTGAGGAGATGGGAAAGACATGAGGAAATTCTAC 1379799 30 100.0 36 NNNNNNNNNN .............................. TGCTGGATTTCCCTTCCTTATTTTAATGTTCATTAC 1379865 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 5 30 36 GTTTCAACTCCACTACGGTACATTAGGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.30,-0.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [17,285] Score: 0.18/0.18 # # Final direction: R [0.27,0.59 Confidence: MEDIUM] >NC_000961 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 637738 30 100.0 39 AAAGCTCCCT .............................. TAACCTTAAGCGGGAGGGAACTTGTTGAGTTCATAAGGG 637807 30 100.0 38 TTCATAAGGG .............................. ACGACGTAATCAACCTCGAAAAGGGTTCCGCACCTGTT 637875 30 100.0 38 CGCACCTGTT .............................. CGTGCTCTGGGTACGCTGTTGCTACGATGTGTGCAGGG 637943 30 100.0 37 GTGTGCAGGG .............................. TATAGATGTCGTCAAATCTATATAGATGCCGGTGGAC 638010 30 100.0 37 GCCGGTGGAC .............................. GAGAGAAACGACAGGCTTACCTCCACTTTCAAGCCAT 638077 30 100.0 37 TTCAAGCCAT .............................. TCAAGTTGATAAAATCATTGCCTGCTCAATATCTTTT 638144 30 100.0 37 AATATCTTTT .............................. AGCTCGGAAGAGGGCAGGATAGGAAAGTATGACGCAA 638211 30 100.0 37 TATGACGCAA .............................. TGTGTTGCATCGGACATGTTCAGGTATGAAATCCTTC 638278 30 100.0 37 GAAATCCTTC .............................. TTCTTCCTTTCCAGCTCGTAACCCAGGGATTCGAGCC 638345 30 100.0 38 GATTCGAGCC .............................. CGGCGAGCTAGATAAGAGGGAGGAGGACGCATTTAGAG 638413 30 100.0 38 GCATTTAGAG .............................. ACGCTAACGTCAGCATGGAAGACGTTTTGAAGGCTATA 638481 30 100.0 36 GAAGGCTATA .............................. AACTTCGTACTCGACTAGCTCCTCCTCATCGTCCTC 638547 30 100.0 38 CATCGTCCTC .............................. ATTTAAGATAGACGGGAGAGTACCCATGTAGCTGTCAA 638615 30 100.0 38 TAGCTGTCAA .............................. GAGTTCTATGTCGACTTTCACACTTGGGTTCCTTCTGT 638683 30 100.0 42 TTCCTTCTGT .............................. AAGCTTGAGGTTGTTCATTATAACGTGAAATGGGATGATGTT 638755 30 100.0 36 GGATGATGTT .............................. TCTGGAAGGAAGGCAATACCAAAATCAGAGGTTGAG 638821 30 100.0 AGAGGTTGAG .............................. GAGGTTATCG ========== ====== ====== ====== ========== ============================== 17 30 37 GTTCCAATAAGACTATAAGAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [600,182] Score: 0.18/0.18 # # Final direction: F [5.18,0 Confidence: HIGH] >NC_000918 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 156460 31 100.0 35 NNNNNNNNNN ..............................C AGTCAGATTGAAGTTATCGTCAACTTCAAAATACG 156526 31 100.0 43 NNNNNNNNNN ............................... TGCTTTATCAGAGAATAGTATTCTTTCTATGTCTTCATAGTTT 156600 31 100.0 40 NNNNNNNNNN ............................... CTTGATAGTATCTGTTTTCCGCGTATTCCACGATTCTTTT 156671 31 100.0 36 NNNNNNNNNN ................AGT.GAG.TG..A.. TCGGTGATAAAGGAGCATTTTTCACAAAAGAAATCA 156738 31 100.0 1 NNNNNNNNNN ...T.................TAAA..TGA. NNNNNNNNNN ========== ====== ====== ====== ========== =============================== 5 31 38 GTTCCTAATGTACCGTGTGGAGTTGAAACCT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.84%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.70,-0.40] Score: 0/0.37 # Array degeneracy analysis suggestion: F [1-17] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [313,27] Score: 0.18/0.18 # # Final direction: F [0.59,0 Confidence: HIGH] >NC_000918 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 244561 29 100.0 39 CAGAACTTGA ............................. ATGACATTTCAGGAGGTGGAGCATGATTACTATCTTTTC 244629 29 100.0 40 CTATCTTTTC ............................. AGTATAAGCTTTCTAAGCCTTGAAAGGAAAAGCTCCTCGC 244698 29 100.0 36 AGCTCCTCGC ............................. TCTCTACCTTCCTTTCAACCTGTATTGCTATGTCCG 244763 29 100.0 GCTATGTCCG ............................. CCTGCGTGCCT ========== ====== ====== ====== ========== ============================= 4 29 38 GTTTCAACTCCACACGGTACATTAGGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.17%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.40,-0.70] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [16,548] Score: 0.18/0.18 # # Final direction: R [0,0.18 Confidence: MEDIUM] >NC_002163 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1455124 37 100.0 29 NNNNNNNNNN .A................................... TATGGCAGTTTTTAAAAGAGCTTGGCGGT 1455190 37 100.0 29 NNNNNNNNNN ..................................... TTTCCAAAGTTTCATTAGTTGAATTTAAC 1455256 37 100.0 29 NNNNNNNNNN ..................................... CTACAAGAATGAGGATGATGATATTTTAC 1455322 37 100.0 29 NNNNNNNNNN A.................................... ATGAGTGTGCTAAAAAAAATGGACTTAAA 1455388 37 100.0 1 NNNNNNNNNN ..................................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 5 37 29 TGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:78.38%AT] # Reference repeat match suggestion: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 97% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [56.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [120,146] Score: 0/0.18 # # Final direction: R [0.5,0.68 Confidence: LOW] >NC_000918 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 279264 29 100.0 36 TACAATCTGC ............................. CATCTGCAACATATTCAAGTTCAGCTTCAAAACCTT 279329 29 100.0 36 TCAAAACCTT ............................. TTCGTCAAGCTTTACCTCAAAAGTCCTCTCAAACCT 279394 29 100.0 38 TCTCAAACCT ............................. AATAATCAACAACTCTTTGATTTTGTGAAATGGAAGAA 279461 29 100.0 37 AATGGAAGAA ............................. AGAACTCTCAGAAGAACCGAGAGCTTTTTCTATTAAC 279527 29 100.0 TTCTATTAAC ............................. CCTGCGTGCC ========== ====== ====== ====== ========== ============================= 5 29 36 GTTTTAACTCCACACGGTACATTAGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.07%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.40,-0.70] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [70.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [39,292] Score: 0.18/0.18 # # Final direction: F [0.27,0.18 Confidence: LOW] >NC_000961 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 150418 29 100.0 38 AAACCCAAAA ............................. TAGAGCTCGAAGTAGACTTTAACCCCAGCGGTTCCACT 150485 29 100.0 38 CGGTTCCACT ............................. AGGTCTGGCTCCTCATCCTCAGGAGGCTTCTTAAATGG 150552 29 100.0 43 TCTTAAATGG ............................. GACTTGAAGAAGGATGTAATAACATATGATGACTTCATAGAAG 150624 29 100.0 47 TTCATAGAAG ............................. ACTAAGTTGCTAACTAGAGTATTGCTCATCCAAGAATCATACTTCAA 150700 29 100.0 39 CATACTTCAA ............................. TATCTGAAGCACTATTGCCAACAAATTCTGGAACAATCC 150768 29 100.0 38 GGAACAATCC ............................. TTGATGACCTTGCCCATTTAGAGTATGACCCAGAAACT 150835 29 100.0 36 CCCAGAAACT ............................. CTGATTTATACGGGTTCTCTGGTTTTTCTACCTCAA 150900 29 100.0 38 TCTACCTCAA ............................. ACTTTCACGAAGACATCAGGGTTTCTCCGATTCCCTCT 150967 29 100.0 42 GATTCCCTCT ............................. ACGTCAATTCCATAGCCCAAATTCTCAGCTACGTCGAATTCA 151038 29 100.0 40 GTCGAATTCA ............................. GGCGTGGAAACATCCCAGCGAACGGTTACGACGACATAAC 151107 29 100.0 42 ACGACATAAC ............................. AGCGTCCAGCCACTTGCTGGAACATTTATTGTTTCTAGCTCG 151178 29 100.0 49 TTCTAGCTCG ............................. ACAGTCGTATACAATCCTTGCAGACATGTGCCCGCAGATGAACTTTCCA 151256 29 100.0 38 GAACTTTCCA ............................. CATAAAATCTAATAAGGATATCTGTAGACATCAAGCGA 151323 29 100.0 51 CATCAAGCGA ............................. TCAACCTTGTCATCAGCAACCGTGTAGGTTATTGTGTACTTTGGGGTTTCC 151403 29 100.0 37 TGGGGTTTCC ............................. AAACTGTCGAGGCCTGCGTTTTGCAGGAACAACCCAA 151469 29 100.0 39 AACAACCCAA ............................. ATAGTAGCATTACTACGACATACTCTGGGCTCTCTGAAT 151537 29 100.0 37 CTCTCTGAAT ............................. CTCAGCTCTTCTGGGGTTATGACGCCTCCCTCTATAG 151603 29 100.0 42 CCCTCTATAG ............................. AAGAAGGGTAGGAGGAAGAGGAGAGAGGAGTTCTTTGGCTGG 151674 29 100.0 CTTTGGCTGG ............................. ATTAATCCCG ========== ====== ====== ====== ========== ============================= 19 29 40 GTTTCCGTAGAACTTAGTAGTGTGGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.62%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [528,493] Score: 0/0.18 # # Final direction: F [0.27,0 Confidence: MEDIUM] >NC_000961 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 32972 29 100.0 38 AGATGACCAA ............................. GCTAGGGCATTACTAGAAAGAGCAAAAAGCAGGTACAT 33039 29 100.0 38 GCAGGTACAT ............................. AAGAAGTCAGGGATTTCATAAGAGACGAGGATTCTCAA 33106 29 100.0 37 GGATTCTCAA ............................. TCATAGCCATCGGCTGGCTTAGACGTAAGCCTGATTT 33172 29 100.0 38 AGCCTGATTT ............................. CTCACATTCCTCGAGCAGAACCCGCACTTACTCACCTT 33239 29 100.0 40 TACTCACCTT ............................. TTTGGCGATGATGGATCAGGAACAAAAGGACGCATTCTTC 33308 29 100.0 34 CGCATTCTTC ............................. AATACTATGAGTGCATAATTAGTATCGAGGTGAT 33371 29 100.0 38 TCGAGGTGAT ............................. GTAAGGGAGGCTTTCGCGACGGCAATGGTTACATATAG 33438 29 100.0 39 TTACATATAG ............................. CTTATAGACGGGAAAGAGATACACGTTATAAAAGAGCTT 33506 29 100.0 39 AAAAGAGCTT ............................. GCTATTGGAGCAAGGGAAATTCAGCTATACAGAAGACAT 33574 29 100.0 43 CAGAAGACAT ............................. TGGAATAGTGTTATTGCTAGAGTTTTTAGTGGAATTGTTGAGA 33646 29 100.0 39 ATTGTTGAGA ............................. GAGTTAAGAAGAGAGGCATTAATGTTTGCAGAATATCTT 33714 29 100.0 43 AGAATATCTT ............................. ATGAAAGCAGAAACTTGGAAGAACATACTGTACATGTCAGCTT 33786 29 100.0 37 ATGTCAGCTT ............................. GAACGATGTTGATATGAAGTTCTCATGCCAGATTATC 33852 29 100.0 39 CCAGATTATC ............................. CTAGGGAATACCTAAGTGCTACTAACTCAAGAACACTTT 33920 29 100.0 37 AGAACACTTT ............................. AGCTTAAATCACTGGGTTATGAGGTTGAACCTATGAC 33986 29 100.0 38 AACCTATGAC ............................. TTACGAACTTCTTGAGTAAAGAAATCACGCAGGCAGGT 34053 29 100.0 GCAGGCAGGT ............................. TTTTGGGTTT ========== ====== ====== ====== ========== ============================= 17 29 38 CTTTCCACACTATTTAGTTCTACGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.07%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [120,698] Score: 0.18/0.18 # # Final direction: R [0,0.45 Confidence: MEDIUM] >NC_000962 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3119185 36 100.0 38 AGTCGTCGTA .................................... TCGGGCACGGCCGAAACACCGCGCGAAGGGCGGTTCAA 3119259 36 97.2 40 GGCGGTTCAA .................T.................. TGGGAGGATGTCACTCGGACATAGCTGTCATCGGCGGTGT 3119335 36 97.2 40 TCGGCGGTGT ................................G... ATGGAGCAGTAGCGTGGCTGTGGTGTGGCGGGCGATATGC 3119411 36 100.0 37 GGCGATATGC .................................... TGCTGCACCTCCCGCACCCGGTGCGATTCTGCGTCCA 3119484 36 97.2 36 TCTGCGTCCA .............................C...... CCCGATAGTCGCGCTCGTCCATGTCCCACCATGAGG 3119556 36 100.0 35 CACCATGAGG .................................... TACCTGATAGAAGCCGGAAAGCTCCGTGCCGTCAG 3119627 36 100.0 38 GTGCCGTCAG .................................... AGGGCACTGGACCTGTATGAGGCACAGATGGCGTACTA 3119701 36 100.0 40 TGGCGTACTA .................................... CCGGATCGGTTACCCACGCCGATTTACTGGCCATCGTCGG 3119777 36 100.0 35 CCATCGTCGG .................................... ACTTGCGCGCACAACGCATCCGCCATCCACGGGGC 3119848 36 100.0 37 TCCACGGGGC .................................... CTGAAAGGGGGACTGTGGACGAGTTCGCGCTCAAAAT 3119921 36 100.0 38 CGCTCAAAAT .................................... TTGAACACGCCGATACCTATTTGGTCGGGAGTGATAAA 3119995 36 100.0 37 GAGTGATAAA .................................... CGGACTTGATCGACGCGAACCTGTCTGACGCGAACCT 3120068 36 100.0 37 ACGCGAACCT .................................... GGCTGGAAAAGGGCGCGGGGCAACCGCATCGTCAAGA 3120141 36 100.0 36 ATCGTCAAGA .................................... GCGTTGTGGTCGTGTCGTGGAGCCTGTATTTCGCTG 3120213 36 100.0 36 TATTTCGCTG .................................... CATTAGTTGGTGTTGTGATCGCTAAACGCCGGGGCA 3120285 36 100.0 38 CGCCGGGGCA .................................... CTATCCGCGGGAAGAGATCACGAATCCGGCGTCGAAGG 3120359 36 100.0 38 GCGTCGAAGG .................................... ATGCTGAGCTGAGGCGCCGGATGATGGTGGTGCTGAAG 3120433 36 100.0 GGTGCTGAAG .................................... TGACAGGGTGCGGTGGTCGCTGATCGGCTCCCCGA ========== ====== ====== ====== ========== ==================================== 18 36 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [38.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [150,1034] Score: 0.18/0.18 # # Final direction: R [0.27,1.33 Confidence: HIGH] >NC_000961 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 933763 29 100.0 41 NNNNNNNNNN ....T..T..........C.......... GAAGTCCTCTACTACGAGAATGGCGTCTACAGGTTCAACGG 933833 29 100.0 43 NNNNNNNNNN ............................. ACAGTTTGCCGAGCAGTTGGGAGCAACTTCCATAGTCTTTCCT 933905 29 100.0 37 NNNNNNNNNN ............................. ATATAGGAGTAGAGACCATAAAAACCTTCCCCTACTA 933971 29 100.0 41 NNNNNNNNNN G............................ GCGACGAATTATGGAGCCACGCCCGAGCGGGTGAGCATTCC 934041 29 100.0 46 NNNNNNNNNN G............................ CTCTTTGGGAACTTTTAGAACAGGCAAAAGAGTTACTTAGGGAGCT 934116 29 100.0 58 NNNNNNNNNN G............................ TTTGTTATTATAGGTCAGCGAATGGGGTGGTTATGGCGGACGAGGAGTGGCAGAGTAG 934203 29 100.0 37 NNNNNNNNNN G............................ AAAATGCTAGGGAAATCCAAGAGATTGGAGAGTTTCC 934269 29 100.0 38 NNNNNNNNNN G...........C.A.............. CTCAATTGCCTTGTCTAGTATAAATCTACCCAGCCATG 934336 29 100.0 40 NNNNNNNNNN G............................ GGTCTGCAGGGCATGTGGATCACCTTTCTATTATTCACAT 934405 29 100.0 47 NNNNNNNNNN G...........C.A.............. CCTTGCAGAAGAATGGCTGGAGACTGCAGGAAAGTTGGTAGTGTTTT 934481 29 100.0 42 NNNNNNNNNN G...........C.A.............. TAGAGGGAAAGTTGTGATATGCAGAGCGGATGAGAACGAGTA 934552 29 100.0 39 NNNNNNNNNN G...........C.A.............. AGAAATTGTTTCAGAAATGTCAATAGTGGACTTGAACAG 934620 29 100.0 42 NNNNNNNNNN G...........C.A.............. AAGGAGCCGTCTCCAGGAGCCCATTCCCACCCTTCCTTGTAC 934691 29 100.0 40 NNNNNNNNNN G...........C.A.............. CTACTAGCAAGGCTGGCAATGTACACAGCAGTAGGGTACA 934760 29 100.0 40 NNNNNNNNNN G..........CC.A.............. TAGTTGTATATTGGGCATTGGTTGATGACCTTACTCTCCC 934829 29 100.0 36 NNNNNNNNNN G...........C.A.............. CCACAATACGGAGCCAGCAACAGCTCTTGTTTTGTA 934894 29 100.0 38 NNNNNNNNNN G............................ ATAATATAAAATAGGAATAAGAGAGGGAACGGAAAGTG 934961 29 100.0 37 NNNNNNNNNN ............................. TTTTGTTGGGGGTGGTGAAGGATGAGGGTAGTAATTG 935027 29 100.0 49 NNNNNNNNNN ............................. TTGACAATCGGGAATTCTCCGGTGAGGGGTAGTCTGGGCAACTCTTCAA 935105 29 100.0 38 NNNNNNNNNN ............................. GCCAAGAAGCCTGAAAAGTCGGAGTGGGAAAAGATAAT 935172 29 100.0 42 NNNNNNNNNN ............................. CGTAGATCCCTCCTATGAGGTGTATGTGCTTGCCAGAAAGTT 935243 29 100.0 41 NNNNNNNNNN ............................. ACGGAGCTCGGGATTAGTCCTGGGACTGTTAGGAAGGAGTT 935313 29 100.0 36 NNNNNNNNNN ............................. AAGTACGTTATTACCTCACTCGTAAACTCTTCCCGT 935378 29 100.0 48 NNNNNNNNNN ............................. ACGGGGTTGATGATTACATTAAAGTTCCTTACAGTTCTTCTTTAAACT 935455 29 100.0 40 NNNNNNNNNN ............................. AGAGAAGTTTTACCTTCCGAGCTCGTGAAGTATATACAAT 935524 29 100.0 36 NNNNNNNNNN ............................. TGAAAAGGGTTATAAGTTCTGGCGGTTAAGATTACT 935589 29 100.0 36 NNNNNNNNNN ............................. CTGGTTCGGTGGAGTGCTTGTGGCTTGGTTCTACTT 935654 29 100.0 36 NNNNNNNNNN ............................. AAGCTGTCGCCCTTCCTCACCACGGCAATTAAAGTA 935719 29 100.0 39 NNNNNNNNNN ............................. ATTAGCGAACGGCATGGTTAAGGAGGTCGGCATAAAGTC 935787 29 100.0 38 NNNNNNNNNN ............................. CTACTTCATTCCGTCTCCCTCTTTCTCTTATCACCGCC 935854 29 100.0 45 NNNNNNNNNN ............................. TAGGACTTCGCCGAGCCTTGCACCAGTCCAGCAGGCGTCTTTCCA 935928 29 100.0 47 NNNNNNNNNN ............................. CTTGACGAGAGAATAGTCCAGAAATTAAGAGGAATGGGATACACGAT 936004 29 100.0 36 NNNNNNNNNN ............................. GTGTTACCGTAGCACAGAAGGGTAGCTTCCGTGTCT 936069 29 100.0 41 NNNNNNNNNN ............................. GCTGCATTCAATGCCGAACCTGCAACTATGCTTTATCTCCT 936139 29 100.0 40 NNNNNNNNNN ............................. CCTATCGGCCTCAAAGACGCAAAGGCATTCTACGATTACT 936208 29 100.0 43 NNNNNNNNNN ............................. TGGAACACCTCTACAAATAATGTTGGATAATAAACGTTTCCGT 936280 29 100.0 36 NNNNNNNNNN ............................. ATGTTACATTGACACTATCAGGAGCAAGCCACATAA 936345 29 100.0 36 NNNNNNNNNN ............................. CTCTAGCTACTTCTGCCGGCTCTTCTAGGGATAATA 936410 29 100.0 37 NNNNNNNNNN ............................. ACGTGACTAAGTACAGGGTTATCGCAAAGGTTGCCTT 936476 29 100.0 37 NNNNNNNNNN ............................. AAGGAGGAGGTGAAGGGGATGAAGATTGTTCTAAAAA 936542 29 100.0 38 NNNNNNNNNN ............................. AAGCTGGGGCTTGATACTGCGGACAGGATGGATAGTGC 936609 29 100.0 37 NNNNNNNNNN ............................. CTCATTGATGGGGAGGATGGGGAAGCTCCTTGCAAAA 936675 29 100.0 38 NNNNNNNNNN ............................. AAGAAATACATTGACAGGAAAGTCATCTATTGGGAGTT 936742 29 100.0 36 NNNNNNNNNN ............................. ATAGTAAAAGAGGAGCAGTACATCAGCGATGACGAG 936807 29 100.0 37 NNNNNNNNNN ............................. AGAGAATCATAGAGGAGGAGGGTGTGGAGACTGCTTA 936873 29 100.0 40 NNNNNNNNNN ............................. CGGACACTGTGCAGAAGCTCAGGCAAGCCAAGAGTAGTTC 936942 29 100.0 41 NNNNNNNNNN ............................. CTTGGGAACTGGGTACGGCTGGGGAACTGGATAAGGCTTTT 937012 29 100.0 40 NNNNNNNNNN ............................. ATATTATCCAGCGTCCTACCGTCTTTCGGCACCAGGAAGA 937081 29 100.0 36 NNNNNNNNNN ............................. CTCAAAGACATCTAATAGGCAAATAGGCATAGCTTT 937146 29 100.0 37 NNNNNNNNNN ............................. CCAGCCTCCTCCCTTGCCTGCTCTGGGAGGAGTTCCC 937212 29 100.0 37 NNNNNNNNNN ............................. GAAGGGGTGATGGCTTATACATTGTAAGGCCTGGGGA 937278 29 100.0 37 NNNNNNNNNN ............................. ACGTTTGGGTAATCCCAGTAAGGGATGAGGCAACCGG 937344 29 100.0 37 NNNNNNNNNN ............................. AAAATGCTTCGATGGCGTGGAGTACCTTAACAGTCTT 937410 29 100.0 41 NNNNNNNNNN ............................. ACTGTTATGTTGACGCGCTAACACACTCACACGCCCAGTAT 937480 29 100.0 38 NNNNNNNNNN ............................. CGGATAGGGTCACTAAGTAACATTGGCCCCCCTTATGA 937547 29 100.0 38 NNNNNNNNNN ............................. CGAAGTGATAGAATGGTCAGAGTACTGGAAATTACCAG 937614 29 100.0 38 NNNNNNNNNN ............................. CCAGAAAGGGGAACCTACAGGGCTGTAGTAATCAGAAT 937681 29 100.0 37 NNNNNNNNNN ............................. GCGATTTCCGCAACTACCTTGCCTCCTGGGGGAATTG 937747 29 100.0 36 NNNNNNNNNN ............................. AAGACATTGTTCCTGATGATGATAAGTTGGAAAGAA 937812 29 100.0 37 NNNNNNNNNN ............................. AACAACTCCATTTTTATCACCTCGTCTGGACGTTAAA 937878 29 100.0 39 NNNNNNNNNN ............................. GCTGTAAAAGGACAGGGGAAACTTGTTGTGGAGGTTTAC 937946 29 100.0 39 NNNNNNNNNN ............................. TTGTAGACAGTGTTTTTGAAGTCAAGCGTCAGTATCAAC 938014 29 100.0 39 NNNNNNNNNN ............................. GTATTTCGAGTCGGATTTCATCTGGTATGCAAGAAACCG 938082 29 100.0 37 NNNNNNNNNN ............................. CGTTGCTTTCTTAGACGTTGAGGGAGCCGACACGACG 938148 29 100.0 37 NNNNNNNNNN ............................. AAATTAAGTTTCTGCTCCATGCAATTCCACCTCCTTT 938214 29 100.0 39 NNNNNNNNNN ............................. CCCAGGACTGCCCTTCTCAGCAATCCCCAGGAGCCTGTA 938282 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 67 29 39 CTTTCCACACTATTTAGTTCTACGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.07%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [58,526] Score: 0.18/0.18 # # Final direction: R [0,0.86 Confidence: HIGH] >NC_000962 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3121862 36 100.0 40 NNNNNNNNNN CA.G...GGG.GGT..A................... TCGCGGCGAGCACGTCTCACCCAGCAGGCGGTGAGGTTGG 3121938 36 100.0 39 NNNNNNNNNN .................................... ACGGACGAGCTGGACCGCATCAGCGATGCTGAGCTGAGG 3122013 36 100.0 37 NNNNNNNNNN .................................... TTGTCTCAATCGTGCCGTCTGCGGTGACACGCTCCAA 3122086 36 100.0 36 NNNNNNNNNN .................................... CACCAGGATCAGCGCCAAGCCAGTTAGCGCAATCCA 3122158 36 100.0 36 NNNNNNNNNN .................................... CTCCCGGACCATCTGCAGCTCGCCCGGGTCCATGCG 3122230 36 100.0 37 NNNNNNNNNN .................................... CGGAGTCATCCGCGCGGGCCGGCGCGATTGTTGCCGG 3122303 36 100.0 36 NNNNNNNNNN .................................... TGGCGATTTACGACGCTGACGGGAACTCGTGCGAAT 3122375 36 100.0 25 NNNNNNNNNN ................................TCCG CGAAATTCACTGCGCGTTATTCAAG 3122436 36 100.0 41 NNNNNNNNNN .................................... CCGAGCCGACCATCCGCATCACACCGAAAGGGTTGGCGCAA 3122513 36 100.0 36 NNNNNNNNNN .................................... ACGTGGGGAGAGGGAATGGCAATGATGGTCGACGAA 3122585 36 100.0 40 NNNNNNNNNN .................................... CTCGGACAGCATCTCCCCGGGCGGGCAGCAGATATCCCAT 3122661 36 100.0 41 NNNNNNNNNN .................................... CGACCCGTGGCCGCCAGGTTGCCGCCGCCGTTGCTCACCTG 3122738 36 100.0 37 NNNNNNNNNN .................................... CCGGAAGTCAACTAGAGCGGGTGTCGAACGCTGCCCG 3122811 36 100.0 35 NNNNNNNNNN .................................... ATGCGAATCCGCTGTCAGCACATGGGATTCCGAGT 3122882 36 100.0 37 NNNNNNNNNN .................................... CTAGGCGGCCCCGGCGAGGCTGGGGGCGGTTTCACGC 3122955 36 100.0 38 NNNNNNNNNN .................................... CAGCGCAGACGGCAGCCCCGAGTACTCGCTCTCCTCAG 3123029 36 100.0 37 NNNNNNNNNN .................................... AGGCTGAAATTGAAGCCGGAAATGACGACGCATTGGT 3123102 36 100.0 35 NNNNNNNNNN .................................... CTAAGCCCGCTAATCCCGCACAAGTGGTCAGAAAA 3123173 36 100.0 39 NNNNNNNNNN .................................... CTGATGATTGGTCGGCGTATGACGTGCTACTGAGGTGTT 3123248 36 100.0 34 NNNNNNNNNN .................................... TAGAAGGCGATCACTGGAAGCACGGCGCTTGCGA 3123318 36 100.0 36 NNNNNNNNNN .................................... TTGGTCAAAAGCTGTCGCCCAAGCATGAGGCAAAAA 3123390 36 100.0 41 NNNNNNNNNN .................................... ACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTATG 3123467 36 100.0 38 NNNNNNNNNN .................................... GTGCAAGAATTCCGGGTTGCAGTGCAACACGGTTTTAA 3123541 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 24 36 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [36,50] Score: 0/0.18 # # Final direction: R [0,1.42 Confidence: HIGH] >NC_000962 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3121938 36 100.0 39 GTGAGGTTGG .................................... ACGGACGAGCTGGACCGCATCAGCGATGCTGAGCTGAGG 3122013 36 100.0 37 TGAGCTGAGG .................................... TTGTCTCAATCGTGCCGTCTGCGGTGACACGCTCCAA 3122086 36 100.0 36 CACGCTCCAA .................................... CACCAGGATCAGCGCCAAGCCAGTTAGCGCAATCCA 3122158 36 100.0 36 GCGCAATCCA .................................... CTCCCGGACCATCTGCAGCTCGCCCGGGTCCATGCG 3122230 36 100.0 37 GGTCCATGCG .................................... CGGAGTCATCCGCGCGGGCCGGCGCGATTGTTGCCGG 3122303 36 100.0 36 TTGTTGCCGG .................................... TGGCGATTTACGACGCTGACGGGAACTCGTGCGAAT 3122375 36 88.9 29 TCGTGCGAAT ................................---- TCCGCGAAATTCACTGCGCGTTATTCAAG 3122440 36 100.0 41 GTTATTCAAG .................................... CCGAGCCGACCATCCGCATCACACCGAAAGGGTTGGCGCAA 3122517 36 100.0 36 GTTGGCGCAA .................................... ACGTGGGGAGAGGGAATGGCAATGATGGTCGACGAA 3122589 36 100.0 40 GGTCGACGAA .................................... CTCGGACAGCATCTCCCCGGGCGGGCAGCAGATATCCCAT 3122665 36 100.0 41 GATATCCCAT .................................... CGACCCGTGGCCGCCAGGTTGCCGCCGCCGTTGCTCACCTG 3122742 36 100.0 37 TGCTCACCTG .................................... CCGGAAGTCAACTAGAGCGGGTGTCGAACGCTGCCCG 3122815 36 100.0 35 ACGCTGCCCG .................................... ATGCGAATCCGCTGTCAGCACATGGGATTCCGAGT 3122886 36 100.0 37 GATTCCGAGT .................................... CTAGGCGGCCCCGGCGAGGCTGGGGGCGGTTTCACGC 3122959 36 100.0 38 GGTTTCACGC .................................... CAGCGCAGACGGCAGCCCCGAGTACTCGCTCTCCTCAG 3123033 36 100.0 37 CTCTCCTCAG .................................... AGGCTGAAATTGAAGCCGGAAATGACGACGCATTGGT 3123106 36 100.0 35 ACGCATTGGT .................................... CTAAGCCCGCTAATCCCGCACAAGTGGTCAGAAAA 3123177 36 100.0 39 GGTCAGAAAA .................................... CTGATGATTGGTCGGCGTATGACGTGCTACTGAGGTGTT 3123252 36 100.0 34 CTGAGGTGTT .................................... TAGAAGGCGATCACTGGAAGCACGGCGCTTGCGA 3123322 36 100.0 36 GCGCTTGCGA .................................... TTGGTCAAAAGCTGTCGCCCAAGCATGAGGCAAAAA 3123394 36 100.0 41 GAGGCAAAAA .................................... ACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTATG 3123471 36 100.0 38 ACCCTCTATG .................................... GTGCAAGAATTCCGGGTTGCAGTGCAACACGGTTTTAA 3123545 36 100.0 ACGGTTTTAA .................................... TCTATGGACA ========== ====== ====== ====== ========== ==================================== 23 36 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [35.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [112,46] Score: 0.18/0.18 # # Final direction: R [0.18,1.42 Confidence: HIGH] >NC_000962 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3948364 36 100.0 54 NNNNNNNNNN TGC..........AA....T........G....... CACCTGCGGACAAGTCGTCGCCGGGGGTGCTGGCATCAGCTTCAGCAACGGCAG 3948454 36 100.0 48 NNNNNNNNNN ........................G...GTG..... CACCGGGGGCGACGGCGGCAACGCAGGCACCGGCGCCGGCGACCCCGG 3948538 36 100.0 36 NNNNNNNNNN ...A................................ CAGCGGCGGGGCCGGCGGTAGCGGCGGGGCCAACTT 3948610 36 100.0 36 NNNNNNNNNN .................................... CAAAGGCGGCCTAAACACCGACGGACTCAGCAGCGC 3948682 36 100.0 33 NNNNNNNNNN ..C.A............................... CAAAGGCGGCACCGGCGGGGCCGGCGACGACTC 3948751 36 100.0 54 NNNNNNNNNN .GC......G...........A.....GG....... CAACGCCGGCGCCGGCGGCCTAGCCAACACCGGCGGCACCGCAGGCAACGCGGG 3948841 36 100.0 42 NNNNNNNNNN ..T......TGA.......CAA.....T.A...... CCAAGGAGACAGCGGTTCCGGATTGGGCGGCCAGCCCGGCTT 3948919 36 100.0 36 NNNNNNNNNN TGC......GG.........AA.....GG....... TAGCAGCGGTGCCGGCGGCACCAACGGCTCCGGCGG 3948991 36 100.0 36 NNNNNNNNNN .GC......GG.......ACAA......G....G.. TGCTGGCATCAGCTTCAGCAACGGCAGCAACGGCGG 3949063 36 100.0 48 NNNNNNNNNN ..C............G...GTG...........G.. CGACGGCGGCAACGCAGGCACCGGCGCCGGCGACCCCGGCAAAGGCGG 3949147 36 100.0 36 NNNNNNNNNN ..C..........................G...... GGCCGGCGGTAGCGGCGGGGCCAACTTCAACGGCGG 3949219 36 100.0 72 NNNNNNNNNN ..C................................. CAAAGGCGGCATGGGCGGCATCGCTGGCGACGGCGGGCCCGGCGGTGACGGCGGCAACGCCGGGGTCGGAGG 3949327 36 100.0 54 NNNNNNNNNN A..A.........AA.....A........G...... GACCGGCGGCACAGGCGGGGCCGGCGGCAACGCCGGCGCCGGCGGCCTAGCCAA 3949417 36 100.0 87 NNNNNNNNNN ..C...........CA....A..CG....T...... TGACGGCGGCCAAGGCGGTAACGGCGGCCAAGGAGACAGCGGTTCCGGATTGGGCGGCCAGCCCGGCTTTGCCGGCGGCCCCGGCGG 3949540 36 100.0 69 NNNNNNNNNN ...A.....GG.........A..C............ CACCAACGGCTCCGGCGCCGGCGGGGCCGGCGGACAAGGCGGCGCCGGGGGTGCTGGCATCAGCTTCAG 3949645 36 100.0 57 NNNNNNNNNN .......A...A.....................G.. CGTGGGCGGCACCGGGGGCGACGGCGGCAACGCAGGCACCGGCGCCGGCGACCCCGG 3949738 36 100.0 36 NNNNNNNNNN ...A................................ CAGCGGCGGGGCCGGCGGTAGCGGCGGGGCCAACTT 3949810 36 100.0 27 NNNNNNNNNN .................................... CACCGGCGGCAAAGGCGGCATGGGCGG 3949873 36 100.0 27 NNNNNNNNNN ..T..CT...GA......GC.......TGA...... CAACGCCGGGGTCGGAGGAAAAGGCGG 3949936 36 100.0 45 NNNNNNNNNN ..C.AA.....A........G......G........ CACAGGCGGGCCCGGCGGCAGCGGCGGCGCGCCCACCGGCAGCGG 3950017 36 100.0 27 NNNNNNNNNN ..C........AA......G.......TGA...... CGATGGCGCCGACGGAGGGGCAGCCAC 3950080 36 100.0 1 NNNNNNNNNN .GG..T....GA.......GA...T..T.A...T.. NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 22 36 45 CAACGGCGGCACCGGCGGCACCGGCGGCACCGGCGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-9.10,-14.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [29-50] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [16.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2617,710] Score: 0.18/0.18 # # Final direction: F [0.96,0.64 Confidence: LOW] >NC_001880 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 437 30 100.0 35 TGTCAATAAG .............................. TCAATAGCTTCTACTCCTTCAGGCACAGCTTCTTT 502 30 100.0 37 CAGCTTCTTT .............................. AAAGAAGTCCTTTATCTTAGAAACCTTCTTTTTGGAC 569 30 96.7 36 CTTTTTGGAC .............................G GGAGTTCTAAAGAAGAGGTAATCGGGTATCTTTTCG 635 30 100.0 TATCTTTTCG .............................. CGTTAATACC ========== ====== ====== ====== ========== ============================== 4 30 36 CTTTCTATCCCATATATGGGAACTAAAACC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.10,-5.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [438,477] Score: 0/0.18 # # Final direction: F [0.78,0 Confidence: HIGH] >NC_002655 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 3665521 30 100.0 31 NNNNNNNNNN ................AT............ GCGGCACGCTGGATTGAACAAATCCCTGGGC 3665582 30 100.0 31 NNNNNNNNNN .............................. AACCGAAACACACGATCAATCCGAATATGAG 3665643 30 100.0 31 NNNNNNNNNN .............................T TTGGTGACAGTTTTTGTCACTGTTTTGGTGA 3665704 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 4 30 31 CGGTTTATCCCCGCTGGCGCGGGGAACACA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [5,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-14.20,-14.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [83,97] Score: 0/0.18 # # Final direction: R [0,1.55 Confidence: HIGH] >NC_002663 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1322127 36 100.0 30 TATTATGTCA .................................... CGAGCGAGTAAAAACATCATTTTCTCGTAC 1322193 36 100.0 30 TTTCTCGTAC .................................... TTTACATCAATATGTTCTTTAGCGTGGCAA 1322259 36 100.0 30 AGCGTGGCAA .................................... AACCCCTGCATTGTAGGGTTAAGCTTTCCT 1322325 36 100.0 30 AAGCTTTCCT .................................... TAAACCACTAACCGATAGCCAATTATTAGC 1322391 36 100.0 30 AATTATTAGC .................................... CACTTTTAACACTCACATCAGTGACAAGGT 1322457 36 100.0 GTGACAAGGT .................................... CTCGTGTCCCT ========== ====== ====== ====== ========== ==================================== 6 36 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 94% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [325,235] Score: 0/0.18 # # Final direction: F [0.77,0 Confidence: HIGH] >NC_002570 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 339740 32 100.0 36 GATTTTCGCT ................................ TCACTGAAGACTCCACATCCAATGAGTGCGACGATT 339808 32 100.0 34 TGCGACGATT ................................ CTTACATCAAATTCCACGCACTCAGGCACACATC 339874 32 100.0 36 GGCACACATC ................................ GAAGGAAATGAAGTTTTGATAAACTCCGTCTATACC 339942 32 100.0 35 CGTCTATACC ................................ CTAAAATCATCCGCCCAGCTCTGTAAGTTAGCCTT 340009 32 100.0 35 AGTTAGCCTT ................................ GGATTTTACGAGACATGGAGCGATATATAAACGCG 340076 32 100.0 36 TATAAACGCG ................................ TTAAGGGAGATGAATAACGATGACTAAAATCTTCAT 340144 32 100.0 34 AAATCTTCAT ................................ CCCTTTTTGTCTTTGTCGAAATATGCCGCCTTTC 340210 32 100.0 35 GCCGCCTTTC ................................ ACTAACTAGGGGGATATGATCATGTTTAACCTGAG 340277 32 100.0 34 TTAACCTGAG ................................ AAGAATACGCGCGCAACAAAAAAACTTTTAAAAA 340343 32 100.0 36 CTTTTAAAAA ................................ TATTTGTTGATCCCAAGTATCAATACCCCGACTCTT 340411 32 100.0 34 CCCGACTCTT ................................ TCTCAACGTTGCCCTCAGGGCGTACTCTTTTACT 340477 32 100.0 33 CTCTTTTACT ................................ TTGCGTGTAAATCATCACGACGCCCTGTCTTTG 340542 32 100.0 35 CCTGTCTTTG ................................ TTGATTTGTTATTGCCCTATCTAATTTTTGATCAA 340609 32 100.0 33 TTTTGATCAA ................................ TTCGAAGAGAATCAAGATCTGATACTGCTTCCA 340674 32 93.8 36 ACTGCTTCCA ..........T....G................ TTCAAAAATTACAACCTCATGAGGTGTTAAATTCAC 340742 32 96.9 TTAAATTCAC ...........T.................... ATGCCTCTC ========== ====== ====== ====== ========== ================================ 16 32 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.12%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.70,-2.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [404,293] Score: 0/0.18 # # Final direction: F [5.28,0 Confidence: HIGH] >NC_002695 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 3598223 30 100.0 31 NNNNNNNNNN ................AT............ GCGGCACGCTGGATTGAACAAATCCCTGGGC 3598284 30 100.0 31 NNNNNNNNNN .............................. AACCGAAACACACGATCAATCCGAATATGAG 3598345 30 100.0 31 NNNNNNNNNN .............................T TTGGTGACAGTTTTTGTCACTGTTTTGGTGA 3598406 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 4 30 31 CGGTTTATCCCCGCTGGCGCGGGGAACACA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [5,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-14.20,-14.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [83,97] Score: 0/0.18 # # Final direction: R [0,1.55 Confidence: HIGH] >NC_002570 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 345991 32 100.0 35 ACTGGGCGCT ................................ CATCGGTCTTAAATTCAAGACCTGTAGGATCTCCT 346058 32 100.0 35 AGGATCTCCT ................................ TTTAAATTTGGTTTACTCCACCTAATGTAGTTATT 346125 32 100.0 34 TGTAGTTATT ................................ ACAACCACGCATCGTAAACGATCAGCACAACCAC 346191 32 100.0 35 GCACAACCAC ................................ AATCTGATAAGCTTCCTCAAACCAAGCCCAACAAA 346258 32 100.0 33 GCCCAACAAA ................................ CATCCAGACAACCACAGCAACGAGGAGTTGATC 346323 32 100.0 34 GGAGTTGATC ................................ CAGCCCATTATATACTTAATTCCATTAGCTTTAT 346389 32 100.0 36 TTAGCTTTAT ................................ ACCGGGCTCCAGCATGGCCTGTGGGCGGCACTGGGC 346457 32 100.0 34 GGCACTGGGC ................................ ATCAAAAAAGAACAGTGAAGAGGCCTTAAAAAAA 346523 32 100.0 34 CTTAAAAAAA ................................ CCCGATACGCTCCACAAGATCGACAATCCGTGAC 346589 32 100.0 36 AATCCGTGAC ................................ CAAATGTATCTTTTTCCTGTGTTTCTGCATCAAAAA 346657 32 100.0 36 GCATCAAAAA ................................ CTGCTCGCCGTGACACACCGCATTTGTGTGCATGTA 346725 32 100.0 34 TGTGCATGTA ................................ TCTTAAATCTTTTATCAATTGCTCTCTTGTAACA 346791 32 100.0 TCTTGTAACA ................................ CAAATGTTGTT ========== ====== ====== ====== ========== ================================ 13 32 34 GTCGCACTCTACACGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [8,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-3.80,-3.80] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [45.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [293,662] Score: 0.18/0.18 # # Final direction: F [4.5,0.45 Confidence: HIGH] >NC_002663 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2080625 28 100.0 32 NNNNNNNNNN ............................ TTTTATTAATGATGACGGCATATGGGGTATTC 2080685 28 100.0 32 NNNNNNNNNN ............................ CAAGGGGTTTCTCACCGGAAAAAGCAAAAGCG 2080745 28 100.0 33 NNNNNNNNNN ............................ AGTTGATTTGCAAGAATTTATTAAAAAATATAA 2080806 28 100.0 32 NNNNNNNNNN ............................ GATAATCTCATCTCGCACACAGAAGACAGCAC 2080866 28 100.0 32 NNNNNNNNNN ............................ AAAAGATTTTTTAGCACGTTTTAGCGACTGGC 2080926 28 100.0 32 NNNNNNNNNN ............................ GACGGAAGACCAAAGTTCTTTTGAATAAGAAA 2080986 28 100.0 32 NNNNNNNNNN ............................ ACATATGCAGTAATTGACATGTAAAACCCCTT 2081046 28 100.0 32 NNNNNNNNNN ............................ ATTACTTCACCTCTTGCTCAAATGGGGTAATG 2081106 28 100.0 32 NNNNNNNNNN ............................ TTTTGCACAAACAATTAGGTCACCAATCTATC 2081166 28 100.0 32 NNNNNNNNNN ............................ AAGATAGCCGAGCAGGGCGCAAAAGCTATTCT 2081226 28 100.0 32 NNNNNNNNNN ............................ GCTTATGTATCGCGTTTTTTAATTCGACGTAT 2081286 28 100.0 32 NNNNNNNNNN ............................ AGAACCAGAACCTACATTTGTTCCACCTTGAT 2081346 28 100.0 32 NNNNNNNNNN ............................ GAATTTATTAACACTCAAAAGCTCTTGCCCAC 2081406 28 100.0 32 NNNNNNNNNN A........................... ATTATCCAATGAATACATGAATTAAATGATAT 2081466 28 100.0 32 NNNNNNNNNN ............................ ATAAAACCATTTTGTAAACGTTCGATATGCAT 2081526 28 100.0 33 NNNNNNNNNN ............................ ATTCAACAACACACCCCTTACCAGTTCCAGCTG 2081587 28 100.0 32 NNNNNNNNNN ............................ ATTTTTCCCTACAGTTTCGACTTCATATCCCT 2081647 28 100.0 32 NNNNNNNNNN ............................ GTTGGTTGTGGCGGAGCAGTGGATAACGATGT 2081707 28 100.0 32 NNNNNNNNNN ............................ TTATACTTTTTTACACTCAACCGCAGCGATTT 2081767 28 100.0 32 NNNNNNNNNN ............................ AGTCATTCTTTCGCAGATAAAGGGAAAAAAGA 2081827 28 100.0 32 NNNNNNNNNN ............................ TACTCTATCGAACCCCATCCAAAACGGCTGGG 2081887 28 100.0 32 NNNNNNNNNN ............................ GTTTGCAATGTGCCAGTTTTAATACCGACCGT 2081947 28 100.0 32 NNNNNNNNNN ............................ TCTTTTCTCAGGATTGTCTTTTAAATCCTGAT 2082007 28 100.0 32 NNNNNNNNNN ............................ ACCAGAAGAACTGTATAGCGAAATGCTTTATT 2082067 28 100.0 32 NNNNNNNNNN ............................ TGAATAACGTATTCAGACGGAATGCCACCTTC 2082127 28 100.0 32 NNNNNNNNNN ............................ TGTGATTTTTACTCTTTCATTGGTTATTTTCT 2082187 28 100.0 32 NNNNNNNNNN ............................ CACCTAATGGGTTTAATTGTCGCTGTGCGGTG 2082247 28 100.0 32 NNNNNNNNNN ............................ TTCAAAGCTTTCCACCAGCTCTTGGCGTTGAC 2082307 28 100.0 32 NNNNNNNNNN ............................ TTTTGTTGCGGCACCGCCACCGCAGAAAATGG 2082367 28 100.0 32 NNNNNNNNNN ............................ GTTTTTTACTGAGCAAAGCGTCATTTTATTAA 2082427 28 100.0 32 NNNNNNNNNN ............................ GTTTTGAGAACACCTTCAATCCACGGAATAAA 2082487 28 100.0 32 NNNNNNNNNN ............................ ATTGCCGCCATTGTCTCGAACTCTTGCCCTGT 2082547 28 100.0 32 NNNNNNNNNN ............................ ACTAATATTCACTTCTTTGGCTGTTGTGCTAA 2082607 28 100.0 32 NNNNNNNNNN ............................ TTTGCGAGCAAAAAACCAGATAATTCCCGCAA 2082667 28 100.0 32 NNNNNNNNNN ............................ TATCTTCCACATTCCACGTTATATCGATTACA 2082727 28 100.0 1 NNNNNNNNNN ............G............... NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 36 28 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:57.14%AT] # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 92% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [149,265] Score: 0/0.18 # # Final direction: F [1.28,0 Confidence: HIGH] >NC_002737 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 860825 36 100.0 30 NNNNNNNNNN .................................... TGCGCTGGTTGATTTCTTCTTGCGCTTTTT 860891 36 100.0 30 NNNNNNNNNN .................................... TTATATGAACATAACTCAATTTGTAAAAAA 860957 36 100.0 30 NNNNNNNNNN .................................... AGGAATATCCGCAATAATTAATTGCGCTCT 861023 36 100.0 30 NNNNNNNNNN .................................... AGTGCCGAGGAAAAATTAGGTGCGCTTGGC 861089 36 100.0 30 NNNNNNNNNN .................................... TAAATTTGTTTAGCAGGTAAACCGTGCTTT 861155 36 100.0 30 NNNNNNNNNN .................................... TTCAGCACACTGAGACTTGTTGAGTTCCAT 861221 36 100.0 1 NNNNNNNNNN .............................T.C.TT. NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 7 36 30 GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: F [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-2.20,-0.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [104,645] Score: 0.18/0.18 # # Final direction: F [1.55,0.18 Confidence: HIGH] >NC_002754 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 1254483 25 92.0 38 TATTGCGTAA -..............A......... TTGAAGATAGAGTTAAATGAACTTTTGATGACACAAAA 1254546 25 96.0 41 TGACACAAAA ...............A......... GTCTACACCTCTTGCGTCTATTATGATATCATATTTGTCAA 1254612 25 96.0 39 TATTTGTCAA ...............A......... AAATACGTTTTCTCCATTGTCATATTGCGCATAAGTTGA 1254676 25 96.0 37 CATAAGTTGA ...............A......... ACCAAGTGAAACTTGGAATATATAACCAAAAAGATAT 1254738 25 96.0 38 AAAAAGATAT ...............A......... GATTCTTCAATAAAGCTGGTAATATACTTTGACAGAAT 1254801 25 96.0 40 TTGACAGAAT ...............A......... AGTAATAGAAACTCATTCAGAGTCTCTTCCAACCCGTACA 1254866 25 96.0 35 AACCCGTACA ...............A......... CGTGGTAGTGGTGGTAGTTGTTGTTGTTGTAGGCG 1254926 25 96.0 39 GTTGTAGGCG ...............A......... TAGTATAGTGTTACAGTTAAACGCTGTACCGAATAATGG 1254990 25 96.0 39 CGAATAATGG ...............A......... TAGTATAGTGTTACAGTTAAACGCTGTACCGAATAATGG 1255054 25 96.0 41 CGAATAATGG ...............A......... AAAATGTTTAATATTGGTGGAGTAGTTGATTTCGATAATAT 1255120 25 96.0 39 TCGATAATAT ...............A......... AAGGGTAATAGAAAGCATGCCCATATCAGCAAGTTCTAA 1255184 25 96.0 39 CAAGTTCTAA ...............A......... GTAAAATCCCCAACGCCACATACGTTATAAGGGAAGATA 1255248 25 96.0 37 AGGGAAGATA ...............A......... CTAGTGTTAAAATATATTTCAAGCCTTACGATGAGAA 1255310 25 96.0 37 ACGATGAGAA ...............A......... CATGCATCAGTTCATCGTAGTTGAACTCAGCATGGAT 1255372 25 96.0 40 CAGCATGGAT ...............A......... CAAATCCATTCGAGGAAGTGTTAGAAGAGGTGTATGGTGA 1255437 25 96.0 38 TGTATGGTGA ...............A......... CAGAGGGAAAAAGTTTGCAGGAGATTTCAAGTATTACA 1255500 25 96.0 40 AAGTATTACA ...............A......... CAATATTAAATATTAGTGATTTGGTAATAACGAAAATAAA 1255565 25 96.0 39 CGAAAATAAA ...............A......... GAGTGAGACCATGATCATTAACACTGATATTACGGTAAG 1255629 25 96.0 37 TTACGGTAAG ...............A......... AACAAAACTTCACCAGTGATGGAACATTTGAATGTAA 1255691 25 96.0 40 TTGAATGTAA ...............A......... AAACCGCAAGCAATAATGTACTTACGATAAGGGTGATACT 1255756 25 96.0 42 GGGTGATACT ...............A......... ATATGATTATGAGCGATAAGAATGATGCAATATTAGATATAT 1255823 25 96.0 38 TTAGATATAT ...............A......... GAATATACAGAGAATAGAGAATAGAGAACAGAGAACGG 1255886 25 96.0 36 CAGAGAACGG ...............A......... CCGTGATCAGATACAGTAACAGTCATGTTTTTATCT 1255947 25 96.0 37 GTTTTTATCT ...............A......... CATGGAAACGGGAGGAGGGTGAGACAATGAAGGTTAC 1256009 25 96.0 38 TGAAGGTTAC ...............A......... CACATCTTTAGAGGCGAACTACAGGGGGTACAGCAACT 1256072 25 96.0 40 TACAGCAACT ...............A......... GTAGTGTGAGTAGTGTAGTAGTAGTGGCCTGAATAAGTAG 1256137 25 96.0 35 GAATAAGTAG ...............A......... AAATTCTGCAAAGGTAACACAATTGACGAGGTAAA 1256197 25 96.0 40 ACGAGGTAAA ...............A......... CGGTTACGGGGACGTTTGGACATTTAGCAGCGCATCCCAA 1256262 25 96.0 40 CGCATCCCAA ...............A......... TCCCTTCCTCTCTTTCCGCTTTTGCTCGCTTCGTTTAACT 1256327 25 96.0 41 TCGTTTAACT ...............A......... GGCATAACCGCTGCTTTCGGCTGCTGCTGCTAATTGGTCTC 1256393 25 96.0 39 AATTGGTCTC ...............A......... CCTTCAGCAAGTTGAAGATCTTAAGCGTTTCTTCATCTT 1256457 25 96.0 38 TCTTCATCTT ...............A......... ACGCTGAACGACGTAAACAAGCTCGCACAGAAGAAAAT 1256520 25 96.0 40 AGAAGAAAAT ...............A......... AAGTCACTGAATTGTTGGACGAACTAACTGAAAAAATTAG 1256585 25 96.0 38 AAAAAATTAG ...............A......... GGCATTAGAATATGGGTAAAAACTTATAGCGACGAAGA 1256648 25 96.0 36 GCGACGAAGA ...............A......... TGAAGTACTTGTTAATGTTTCACCTCTAAAGAAGAT 1256709 25 96.0 37 TAAAGAAGAT ...............A......... TTTACCACCGCTCAGACTTCTTGAGATGTTTAAAACC 1256771 25 96.0 44 GTTTAAAACC ...............A......... GAATTCTATCAAGTATTGCGGAAGTAAATACTTCATATTTATCA 1256840 25 96.0 38 ATATTTATCA ...............A......... TCCACTTGGCATATCTTTGGCTGAAGTTCCTTGGTGTG 1256903 25 96.0 36 CCTTGGTGTG ...............A......... CTTCAAGTTGATGAAGTTATAAAAATGTTTGAAGCT 1256964 25 96.0 36 GTTTGAAGCT ...............A......... CACATTAGCAAGAATCGTGCTAGCTACAGTTGGATT 1257025 25 96.0 39 CAGTTGGATT ...............A......... AACTTGGAAGAGTTTAGTGATAAAATCATGGAAATGTTC 1257089 25 96.0 41 GGAAATGTTC ...............A......... TGTTAATATTGCCGGTTCGGCTAGTGATATAGTGTGGTTCT 1257155 25 96.0 34 GTGTGGTTCT ...............A......... GGTAATGGTCTGTATATTGTCTTTAAGTATTTAT 1257214 25 96.0 39 AAGTATTTAT ...............A......... AGCACTAATTGCGAGATTTGAGGATGCCATCAGAAGTAA 1257278 25 96.0 40 TCAGAAGTAA ...............A......... CAAGCTAAGATTGCGAGTACAAGCGATCACTTACACAAAG 1257343 25 96.0 40 TTACACAAAG ...............A......... ACGCCGTTTCTCTATAGTTATTGAACCATGCAATATCATT 1257408 25 96.0 38 CAATATCATT ...............A......... ATTAGCTAAACCATTTCAAAGGCTAACATCTTCTATGT 1257471 25 100.0 40 TCTTCTATGT ......................... ATAAATCCACAAAGTGGCCGTTCAAAGCAAAGAGTTTATT 1257536 25 100.0 39 AGAGTTTATT ......................... TGATATTTATTTTCTCGTGAAAAGTGGAGGGCCTAGAAC 1257600 25 100.0 36 GGCCTAGAAC ......................... ATTATATCATGGAGACCCAGGTGCTGTGACTATCAA 1257661 25 100.0 43 TGACTATCAA ......................... AATTAGCCAGCGTGCCATCTGGGTAAACGTGTATTTTGGTTAA 1257729 25 100.0 39 TTTTGGTTAA ......................... ATAATATATTTCGTTCCAACTACACCTAATGGATTCGGG 1257793 25 100.0 36 TGGATTCGGG ......................... TAATTGTCTGCCCTTGAGTTCCACTGAGAGAAACGC 1257854 25 100.0 39 AGAGAAACGC ......................... AAAAGACGTACAAATATACATCGCACCGAACGGACACAT 1257918 25 100.0 37 ACGGACACAT ......................... GGGTGCGTGCCCCACAGGTCGCGGGTCTACCCCTTGC 1257980 25 100.0 37 TACCCCTTGC ......................... TTATGTCGTTATCTTCTTCGTTTTTGCTGCGTTGTTT 1258042 25 100.0 34 TGCGTTGTTT ......................... GATAAAATATTAAATTCTCAAATTCCATTTAGAG 1258101 25 100.0 35 CCATTTAGAG ......................... AAAATTTGAAACAATATCGCATCTTGAATAATTAT 1258161 25 100.0 37 GAATAATTAT ......................... ACCCCAGAATCCTTGTAAGTAATTTAGTAGCAATGTA 1258223 25 100.0 40 TAGCAATGTA ......................... AGAACAAGGTAAATAGGAGTGTAGTCATAAGGAGAGCAAT 1258288 25 100.0 38 GGAGAGCAAT ......................... CTCATTTATTCGCATCATCTCCCACCTTATCTAAGCCG 1258351 25 100.0 36 ATCTAAGCCG ......................... CCCAAGTAAGCGATATTTTAATGGGCTTACTTTTTA 1258412 25 100.0 38 TTACTTTTTA ......................... GAAAAATTGGTAGAGGACAATATGAAGAATATATTATT 1258475 25 100.0 39 ATATATTATT ......................... GAAAAAAAGAAGGTGATGAGAGAAGATGAGTGAGAAAGA 1258539 25 100.0 36 GTGAGAAAGA ......................... GATCTATTCGCAGAGTTTGCGTCAACACATAAATAT 1258600 25 100.0 36 ACATAAATAT ......................... ACTTTCATCTTCAATTGGGACGATTAAACTATTTAG 1258661 25 100.0 40 AACTATTTAG ......................... CAAAAATCTCAACGACAACACCAACCACAGCATTAACAAG 1258726 25 100.0 37 CATTAACAAG ......................... CTGACCTTAGTAATGAGTAATAGATTCCCTGCGATGA 1258788 25 100.0 35 CCTGCGATGA ......................... GGCATTTACAAGTGGTCACCAGAAATGGGCGTGTA 1258848 25 100.0 37 TGGGCGTGTA ......................... TGCCCCATGTCTTCGGTTTGCAAATCATAAGGTATCC 1258910 25 100.0 37 TAAGGTATCC ......................... CCATTTAAGATCTACTTCACACCACCTTCGCAGGAGA 1258972 25 100.0 43 TCGCAGGAGA ......................... ATTTATCTGTTTCATCCGTGGCTTTGCCACTCATTTCGTCTTC 1259040 25 100.0 38 TTTCGTCTTC ......................... TACAAAAACTAAAAAATAAAAACTAAAAATTAAAAAAA 1259103 25 100.0 36 ATTAAAAAAA ......................... TGATAGATTGGGAGAAATACTACCTGAAATTGAAAT 1259164 25 100.0 41 AAATTGAAAT ......................... TATGTTGTAGAACTTAAACCTACATACCATTCCGCAATTAT 1259230 25 100.0 39 CCGCAATTAT ......................... CACTAGAATTGAATGTCGACAAACATACGACATGGTTCT 1259294 25 100.0 39 ACATGGTTCT ......................... AATGGAGGCAATGAATGAATTAGAAAGTGAAGAGAGAGA 1259358 25 100.0 36 AAGAGAGAGA ......................... TCCAGAATGGAGGGCATATAATGTTGAGCAGTATGA 1259419 25 100.0 39 AGCAGTATGA ......................... AAATACAAAGCCGATGAACCGCAATCTGCCCCTACAATT 1259483 25 100.0 39 CCCTACAATT ......................... TGAAGAGATTGACGGTATAAAATTTGAAGATATAATTAA 1259547 25 100.0 39 ATATAATTAA ......................... ATGGTATCTTGAGGCAGTGTACGGGTGATGCTAAGTTAT 1259611 25 100.0 37 GCTAAGTTAT ......................... AAGTGCCTCCAGCATTTAGTGCAAGTTGGTTTGATAG 1259673 25 100.0 38 GGTTTGATAG ......................... TTCTGTTAAGCGCTCTTGCAACCTTCATGCCATAGCCC 1259736 25 100.0 38 GCCATAGCCC ......................... CTTACTTGTTGGCTAGGATTTTACCAAATGCAATTGAT 1259799 25 100.0 37 TGCAATTGAT ......................... GGTTCTAGCTTACGTTATCTAATTTCGACGTGTGCGG 1259861 25 100.0 37 ACGTGTGCGG ......................... CATATAGTTCACCAGCACCCAGCGGTGTGAAGGATAT 1259923 25 100.0 37 TGAAGGATAT ......................... ATTTGAAAATGTTTAACATAACTGGAGTAATTCCATT 1259985 25 100.0 38 TAATTCCATT ......................... TTCATCTAGAAGATATGAACAAGCTGTTGATGTGCAAT 1260048 25 100.0 38 GATGTGCAAT ......................... GACATTAGCCCTGGGGGTATCTAAACCATCAGTTGAGT 1260111 25 100.0 37 TCAGTTGAGT ......................... ATATGACAACGTAGACATTTTCATTATGGATTGTGAA 1260173 25 100.0 36 GGATTGTGAA ......................... ATCAAAACGGCACAGAACATCTTAGGGCAATTAGCT 1260234 25 100.0 38 GCAATTAGCT ......................... TAATATGATTTTATTAAATCTAGTAGTAAAGCCATTAA 1260297 25 100.0 43 AAGCCATTAA ......................... AACATCTTAATGCCTTTATACCGCCAGTTACACATTATATCAA 1260365 25 100.0 39 ATTATATCAA ......................... AATTTACGATATTATACCGGTTGAGCCTGCAAAAAATGT 1260429 25 100.0 CAAAAAATGT ......................... TGTTGTGTT ========== ====== ====== ====== ========== ========================= 95 25 38 CTTTCAATTCCTTTTGGGATTAATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.00%AT] # Reference repeat match suggestion: R [matched GATTAATCCCAAAAGGAATTGAAAG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-4.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [59,1596] Score: 0.18/0.18 # # Final direction: R [0.37,5.59 Confidence: HIGH] >NC_002754 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 1297153 24 100.0 43 TAATCCTACC ........................ TGAGGATATACTTTAATCGGATTGTGTTAGGTGGAGAGATGTT 1297220 24 100.0 41 GAGAGATGTT ........................ CCATCTACCACACCGCGGACACTGGTATAAACATGCACCGG 1297285 24 100.0 38 CATGCACCGG ........................ TCAGTCTTATTGTCGAGGAGTAGTGGTAGGAGTGATAC 1297347 24 100.0 39 GGAGTGATAC ........................ GGAAGAGACAAGACTCTACAGTACAATATGCCCCAGATG 1297410 24 100.0 42 GCCCCAGATG ........................ AACCGGAAGTACGAACTATGTTGCTGAGATTGTGGTCTATGT 1297476 24 100.0 40 TGGTCTATGT ........................ TTTGTGGTACTTGTAGTTGTGATGCTGACGTTCCACTACT 1297540 24 100.0 41 TTCCACTACT ........................ TCAAATCAACAAGTTACAGTAACCAACGGTACTTCAAACCC 1297605 24 100.0 40 CTTCAAACCC ........................ TATGTTGTTGTTTGTTGAGTTGTGGTCTGCTGTGTAGTTG 1297669 24 100.0 38 TGTGTAGTTG ........................ ATCCAGACGAAGTGGGGGCAATCATGCAGCCCCCCTCA 1297731 24 100.0 40 GCCCCCCTCA ........................ AAAGATAATGGATAATAACTTAACATTACAGAATTTAATG 1297795 24 100.0 41 GAATTTAATG ........................ TAAACTCATGTAGCGTTAGTTGGAGCGGATCTGCACAAGTA 1297860 24 100.0 38 TGCACAAGTA ........................ CCAGTGTTTTACTTAACATCAGTACAAGGATCAAAACC 1297922 24 100.0 37 GATCAAAACC ........................ AAGAGTTCGATCGGATTAAAGAGGAGATTGAGCAAAA 1297983 24 100.0 42 TTGAGCAAAA ........................ AGTGACTCAATACCGGTCACAATATCTTCAGGTGCTCCCATT 1298049 24 100.0 39 TGCTCCCATT ........................ CGTCCCCATCGAATACGTAAGAGTCTGGAGGGGAATTTA 1298112 24 100.0 40 GGGGAATTTA ........................ TAAAGGTTACGTTAGAACTAGAAAAGAATGGAAATCTGAA 1298176 24 100.0 37 GAAATCTGAA ........................ TGGAGTTTTCAGATATTTTGTAAAGTACGTTCAGTTT 1298237 24 100.0 39 CGTTCAGTTT ........................ AATAGGCTATGGTGTGTGGATGGACCTGTATCGTAAATA 1298300 24 100.0 39 ATCGTAAATA ........................ CACGCAAAAGGATAAACAATATGGTGCGATTCGAATGGA 1298363 24 100.0 40 TTCGAATGGA ........................ ACAAACAGTGTGTGTTACATTATCCTTCGATTACAACGAA 1298427 24 100.0 40 TTACAACGAA ........................ CTTCTGTTCTGAAATTATAAAGGACATGCTGATAAAATTT 1298491 24 100.0 38 GATAAAATTT ........................ CTAACTGAAGAAGACCCAATTTATATTGCAGGATTTGT 1298553 24 100.0 37 CAGGATTTGT ........................ TGCAGAACCATTAGCTGGTACAGTAACTGTTTGCCAA 1298614 24 100.0 42 TGTTTGCCAA ........................ ACCATAGTCCCTGATTTCGGTATTCTTTACCCTGTAACCCCT 1298680 24 100.0 40 TGTAACCCCT ........................ GCTTATCTCTCTCATGCGCCATTTCTTCTTTCCTTCTTTC 1298744 24 100.0 40 TCCTTCTTTC ........................ TATATCCCAAAAAATCTCAGACATTAGAGAGCATTTTTGT 1298808 24 100.0 41 GCATTTTTGT ........................ AATAGATCCAGAAAATGAATATGTCAAATTAGCTGACATTT 1298873 24 100.0 40 GCTGACATTT ........................ TTTATTTTCTTGCGATATTTCATTACCGAGACTTTTGCCT 1298937 24 100.0 39 ACTTTTGCCT ........................ CAACCACAAGAAGAAACCACTACCCAAGAAATGCAGGGA 1299000 24 100.0 38 AATGCAGGGA ........................ TTTGACTCCTGGGCTTAACGCACCTTCTCTGGCCTCGA 1299062 24 100.0 39 CTGGCCTCGA ........................ TTAGCCCAGATGAAGCAACACAAGAGGCTAGTAAGGTTG 1299125 24 100.0 AGTAAGGTTG ........................ TGAGGGTTTA ========== ====== ====== ====== ========== ======================== 32 24 39 CTTTCAATTCTATAAGAGATTATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.00%AT] # Reference repeat match suggestion: R [matched GATAATCTCTTATAGAATTGAAAG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [513,302] Score: 0/0.18 # # Final direction: R [0,5.27 Confidence: HIGH] >NC_002754 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 1233466 25 100.0 38 AAACACAACA ......................... GAACTAGCTTATAGTTTAGAAGAAAACAAACAAATAAT 1233529 25 100.0 38 AACAAATAAT ......................... ATTTTCAGCTGAAAATTTGAAATCTGTAGATTTGGATG 1233592 25 100.0 39 GATTTGGATG ......................... TTCCAAAATTGATCTTCTATTGCGTCTTTTATTGCTTTT 1233656 25 100.0 37 TATTGCTTTT ......................... ATTGTAGTCTTTATCAATCCACGTTTCTCTAATCTTG 1233718 25 100.0 38 TCTAATCTTG ......................... AATTTTATACCGTCAATCTCTTCATTGTCGCCATAATC 1233781 25 100.0 37 CGCCATAATC ......................... GTGCTTCGCACATCACTCATCTTCTCTCATCACCTTC 1233843 25 100.0 36 CATCACCTTC ......................... AATGTATAAAGGTAACCAGGAGTTGTCCCACTTTCA 1233904 25 100.0 37 CCCACTTTCA ......................... ATATTTACCTTACTCTTTTGGAGAAAGGTTATACGAC 1233966 25 100.0 37 GTTATACGAC ......................... TTTAGGATTGACGATAAAGAAGATGTTATCGTTGGTG 1234028 25 100.0 40 ATCGTTGGTG ......................... CGAACGTAGTTTGAACCTGGCGGTATGTAGACATTAGCTT 1234093 25 100.0 38 ACATTAGCTT ......................... AGACTTGATGTCGTCCTGTTGCCAATTAGCGAGGGCTT 1234156 25 100.0 42 GCGAGGGCTT ......................... CTAATAAAGACGTTAGGATGTTTGCAGTTGCCTGATGACCAA 1234223 25 100.0 40 TGATGACCAA ......................... CTGGACAGTATTCAATTTTAACTGCAATTAAACCTCTCTT 1234288 25 100.0 41 AACCTCTCTT ......................... CAAAATATATACCGGTCTAAAGGTTTCCTGTATCGCAGACC 1234354 25 100.0 38 ATCGCAGACC ......................... TGCGACTTGCAGTATCGCAGATGCAACCATTTTTGCAT 1234417 25 100.0 39 ATTTTTGCAT ......................... TTAACTCCACTAGGTGAACAAGTCGTCAAATCTCAAATT 1234481 25 100.0 43 ATCTCAAATT ......................... TTCAGAATAGCTTAATGCCTCAAATGGTAGATTTGGAATACCA 1234549 25 100.0 40 TGGAATACCA ......................... AAATCTATATCAAGTTGTAATTGGTGTCGACAATCAGCTA 1234614 25 100.0 39 CAATCAGCTA ......................... TTACAACTTGTTGTCCAAACTCCGTGAGTAAACGTATTT 1234678 25 100.0 38 AAACGTATTT ......................... AAATTTGGGACATTAAAAAAAGCTAAACAACTTTTGAA 1234741 25 100.0 36 AACTTTTGAA ......................... AATTCAAACCCCGGATCAAGAGTTAAACCAAGATGA 1234802 25 100.0 39 ACCAAGATGA ......................... ACAATTATTAACGCTTAATTTGCAAGGTATAATTTCTTC 1234866 25 100.0 36 TAATTTCTTC ......................... TTCAATATATCATCAGGATTCATTTTTACAATTTTA 1234927 25 100.0 40 TACAATTTTA ......................... ACTTCTACATTTATGTTGACTCCCATCTTGCTCATATCTT 1234992 25 100.0 39 CTCATATCTT ......................... ACTGCTATTTTTAGTTTACGATTTAAGACTGGAGTTTTA 1235056 25 100.0 38 TGGAGTTTTA ......................... TTATCATTCTGAGGTTTAGCTTTTTCTATTTTTTCTAT 1235119 25 100.0 41 TTTTTTCTAT ......................... ATAACTAATTGACTTAACTTCTTTTTGTTTTCCTCGATTAG 1235185 25 100.0 38 CCTCGATTAG ......................... CTCGCTAACGTTCAAATCTTTCAATAATTTTTGCACGT 1235248 25 100.0 39 TTTTGCACGT ......................... ATCTTTATTTTCATTTTCATATTCCCACACTAGGATGAT 1235312 25 100.0 38 CTAGGATGAT ......................... ATCAAATTTGCGGAAGAGCAGGAAGACCGGGATATGAC 1235375 25 100.0 34 GGGATATGAC ......................... GGTTTTCTGCCAACGACTGCAATAAAACCAAAAA 1235434 25 100.0 38 AAACCAAAAA ......................... GTATTTTCTAGAAAACCTCTCAGCTTTTTCTTGGACAT 1235497 25 100.0 38 TCTTGGACAT ......................... TCCCCTCCCTCTTCCTGAGTTTCTTCTGGCGATTGTCC 1235560 25 100.0 40 GCGATTGTCC ......................... TTTATATAATCCTCAACTGTAAATCTTGGGATTTTTTCAT 1235625 25 100.0 38 ATTTTTTCAT ......................... ATATTGTGCAGTAGAATAAATTATAATTGCGATTGCAA 1235688 25 100.0 37 GCGATTGCAA ......................... ATACAATAGACACTACATGCCTAGATGAAGAGAATAA 1235750 25 100.0 38 AAGAGAATAA ......................... ACAGAAAAATGAAACCCCGCAACAATATTTCAATTCTT 1235813 25 100.0 40 TTCAATTCTT ......................... CATCTTTTTCCGTCGCTTTATATCACCTATGGACTCTTCA 1235878 25 100.0 38 GGACTCTTCA ......................... ACCATACCCAACTTCTAACAACGTCGTTCTTAACAACG 1235941 25 100.0 39 CTTAACAACG ......................... AGTAAATCAAAAAGCAAATAAGTCAGGGGTGGAGAATTC 1236005 25 100.0 34 TGGAGAATTC ......................... TAACGTTTTTAGTTATGTCGTTATCTTCTTCGTT 1236064 25 100.0 43 CTTCTTCGTT ......................... TTGTAGTTTGAATGCGAAACCATTTGCTAAGATATTGATAATG 1236132 25 100.0 38 ATTGATAATG ......................... CGTTATCACAGTTATATTTCTTCTTTAAAATATCATAT 1236195 25 100.0 38 AATATCATAT ......................... TTATCCAGACATTAAGCATGTTGTCGTAGAGGTAGCTG 1236258 25 100.0 37 GAGGTAGCTG ......................... TACTTTTCCATCTTGAGGTATTGCGTTTAGTTGCACT 1236320 25 100.0 36 TAGTTGCACT ......................... TAATATTTTCCAGATTGTCTAAAATTCATCAAATTA 1236381 25 100.0 39 CATCAAATTA ......................... TCTGTCAGTAGCACAAATAATTTTGTTCTCATAAATAGT 1236445 25 100.0 41 CATAAATAGT ......................... CGCCCATAGGACGGGATTTAGATTTCTTGTAGGATTTGTTT 1236511 25 100.0 41 GGATTTGTTT ......................... GTAAGGGGGCTATCCATCCCCGCCCGTGAGGCTTTCCGCCC 1236577 25 100.0 38 CTTTCCGCCC ......................... TGAATCGTTATGGGCTTAGTTAATTCCGTAGTTAAACC 1236640 25 100.0 39 TAGTTAAACC ......................... AACTTAAAGTTGTTATACGTCATTGGAATAACATTCATT 1236704 25 100.0 40 AACATTCATT ......................... TTTACGATATTCACGTCGACAGATACCCTTACTGCTGATC 1236769 25 100.0 38 ACTGCTGATC ......................... ATAGAATTGCATCAGACAGCTTTCATACCTCCGCATCT 1236832 25 100.0 37 CTCCGCATCT ......................... TGAATAGCAACATCGTGTAACCTCATCCTCAGCCTTC 1236894 25 100.0 35 CTCAGCCTTC ......................... TCTTTCGCTCCTTGCACTAGTTTTTCATTTTGCTC 1236954 25 100.0 40 CATTTTGCTC ......................... ATATCCAACGCTTGAAGTAATATTTGAATGTCAATACTTT 1237019 25 100.0 39 TCAATACTTT ......................... ATGCATTCCACCTCTGTTTCTTCCTCTTTACGCATTTCT 1237083 25 100.0 36 ACGCATTTCT ......................... CTCTATATTCTACTATCCTCCCTCTCTGCTCTGGCG 1237144 25 100.0 39 TGCTCTGGCG ......................... ATCTCTGATTTCTCAGTTCTCTAATTCCGAATACTACAT 1237208 25 100.0 41 AATACTACAT ......................... TAAAACTGCTCAAAAATGCTAGAATTATAATTATGGCTATG 1237274 25 100.0 41 TATGGCTATG ......................... ATTTTGAATGTTACGACTCTCGTCATTTTTCCACCTCTTCT 1237340 25 100.0 36 CACCTCTTCT ......................... GGAGTAATCTTTCCAGTCAAAAGACTTTCAGCCCTC 1237401 25 100.0 36 TTCAGCCCTC ......................... TTTATAAGCTTCAATAGAGCTTTATCTTGAGCAATC 1237462 25 100.0 39 TTGAGCAATC ......................... ATAAATGGTACGTCTTCAGGCGGAAAGCCTTCCATTTGT 1237526 25 100.0 34 TTCCATTTGT ......................... ATATTACCTTGCTGGATAAAGTTAATGATTTCAT 1237585 25 100.0 38 ATGATTTCAT ......................... ATCTTTAATAAATCCTCCTTTATTCTCATGTAATGCAT 1237648 25 100.0 40 TGTAATGCAT ......................... TTATATTACGATAAAAGTGCCAGATATGGTTGTTGGCATT 1237713 25 100.0 40 TGTTGGCATT ......................... CCCACCAGAAAAAAAGAAGGGTGGGGGGCAAGGGCCCCGG 1237778 25 100.0 40 AGGGCCCCGG ......................... GCATATATTATTGGCTGAGGTAAGGTCGGCATATCTGTCG 1237843 25 100.0 39 ATATCTGTCG ......................... CCATCCAAGCCTTGATTTGATATTCCTTTTAATGTCTGC 1237907 25 100.0 40 TAATGTCTGC ......................... TTCATTATCCTCAATTTTTTCTATACCCTTGTTGTTCATT 1237972 25 100.0 39 GTTGTTCATT ......................... CCCCACTGGAATGCACCATTTCTTGCAAGTAATACATTT 1238036 25 100.0 40 TAATACATTT ......................... ATGCAGTTTGGCCTAAAGGAATATATACGTTAATGTCTGC 1238101 25 100.0 38 TAATGTCTGC ......................... CCATTATTCGGCACTGCATTTAATTGAAGCACTATACT 1238164 25 100.0 39 GCACTATACT ......................... AATATTTTGAATATTTGTACACCCATATGAAAAACGCAG 1238228 25 100.0 37 AAAAACGCAG ......................... TATCTCTTATTCGTAAGGGTTAAAACAAAATTATCTT 1238290 25 100.0 40 AAATTATCTT ......................... TATATTGATGAGTCGAAGAATCTGATGAAGAACTTCCTTG 1238355 25 100.0 35 AACTTCCTTG ......................... TTTTTATTTAAGAACACTGATGGAAAGATCTATAG 1238415 25 100.0 37 AGATCTATAG ......................... ACCCATATTGAAGAGTTTGAGCATAAAAATGATTCTA 1238477 25 100.0 39 AATGATTCTA ......................... TTCTCAATTGCCTTTCCCACGATAACCTCAATCCAGTAG 1238541 25 100.0 39 AATCCAGTAG ......................... GAACGAACATGGTAAGCCCTGAGGACCTTGAAAACGATG 1238605 25 100.0 40 GAAAACGATG ......................... CTCAGCAGATTTAAACTAACGATATTAATTGTACACACTG 1238670 25 100.0 39 GTACACACTG ......................... TTAAGTTGTTTTGCTCTATTTAAAACAAAAATAATCCAA 1238734 25 100.0 39 AATAATCCAA ......................... CAAGTGCAATAGCAAACTACTACTAAATATAACATATAT 1238798 25 100.0 38 TAACATATAT ......................... CTATATGGGGTCAGGGTGGAACTAAAATCGTGGCTTTA 1238861 25 100.0 39 CGTGGCTTTA ......................... CTTACTTAAGCCTAATATCTCCGCAACTTCATCAATAGT 1238925 25 100.0 41 CATCAATAGT ......................... GAACTCTCTATTGCTGACGAACTAAGAGAAAATTGTTTCAA 1238991 25 100.0 38 ATTGTTTCAA ......................... TCTAACAATGAATCTGTCATAAAGTGCCCGCAACTCTT 1239054 25 100.0 36 CGCAACTCTT ......................... AGATTATCAATCAAGTGATAGAGATATTGCAATTTT 1239115 25 100.0 39 TTGCAATTTT ......................... TGTTAGATACGGCAAGGCAAAGATTACAAACAAGGATGT 1239179 25 100.0 39 ACAAGGATGT ......................... AAAATGGTGCTTATCGCTATTAGGTAGTCGGCGTTGTTT 1239243 25 100.0 36 GGCGTTGTTT ......................... ACTACTCTTACTTTTTGCATTCCTTTTGGAGTAGGC 1239304 25 100.0 39 TGGAGTAGGC ......................... TATTTACGTGCATAAAGAACATACCTCCAGCGCCTCCTC 1239368 25 100.0 37 GCGCCTCCTC ......................... TCGTAAACTTGAAACTGACCCGTATATCCGAATTTAC 1239430 25 100.0 39 CCGAATTTAC ......................... GTATTATTCTCATAATAGGAACCGCCCTAGTGTATGCTA 1239494 25 100.0 37 GTGTATGCTA ......................... CGTGATTACATGGAACATTACTTTTCCACCGAATATT 1239556 25 100.0 39 ACCGAATATT ......................... TTTATGTTTTCGAGTTCTTCTGGTCTTAACATCACTCTA 1239620 25 100.0 36 CATCACTCTA ......................... GTCAGTTATACGCTACATATGAAAAGATAAATGAAG 1239681 25 100.0 38 ATAAATGAAG ......................... ATCTCTCTTAGTTTTGTCAAAGCTTCTGACCCGCTCCT 1239744 25 100.0 40 ACCCGCTCCT ......................... TCTATCTTTATTGTTACAACTTTTGCATACGACATAATTT 1239809 25 100.0 39 GACATAATTT ......................... TCCTCTATCATCTCCTTTAAGCACTGTGTAATCTCACTT 1239873 25 100.0 37 AATCTCACTT ......................... TAATACTGCAGTAACGGTACAAGTCATTGACAGCGCT 1239935 25 100.0 TGACAGCGCT ......................... ATATGGTATT ========== ====== ====== ====== ========== ========================= 103 25 38 GATTAATCCCAAAAGGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.00%AT] # Reference repeat match suggestion: F [matched GATTAATCCCAAAAGGAATTGAAAG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-1.50,-4.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [572,500] Score: 0/0.18 # # Final direction: F [5,0.37 Confidence: HIGH] >NC_002754 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 1305634 24 100.0 37 TAAACCCTCA ........................ TTTGCCATTGCAGAATTATCGCCCAGAACAAATTTCT 1305695 24 100.0 40 ACAAATTTCT ........................ ATCATATATCTTGTATTCCGCATATTTAAATCTTTCTATC 1305759 24 100.0 39 TCTTTCTATC ........................ GCGGTTGAAGAAAAGTGCAGGATCACGGGGTCAGGACTG 1305822 24 100.0 39 GTCAGGACTG ........................ TAGACTATGCGTTATACTATGTCCGCAATGGCATTAGCG 1305885 24 100.0 39 GGCATTAGCG ........................ TTGTATTTGTCGGTGGGTGAACTAACAAATATACGCCTT 1305948 24 100.0 39 TATACGCCTT ........................ TCAATTTGTGAAACTTGTCCCGGCTCATTGGATTTGTTG 1306011 24 100.0 39 GGATTTGTTG ........................ ATCAAGGGCAAATCGGGAGTCCAGGAGATTCTCGAAGCA 1306074 24 100.0 39 TCTCGAAGCA ........................ CTTGAAATTACAGAAAAAATAACATTCATTTACCCTGTG 1306137 24 100.0 39 TTACCCTGTG ........................ ATTCCAACGGCACTTCTTATTCTTTCACAGTTACGGGCT 1306200 24 100.0 39 GTTACGGGCT ........................ CAGAATTAGCACGGTTAGTCGAGCAGTTAGAAATTTACT 1306263 24 100.0 39 GAAATTTACT ........................ CTTTGAAGTACTCTTCTCTATGATACGACACCAATTCTC 1306326 24 100.0 40 ACCAATTCTC ........................ AAATTCTCGCAGAATTCTATCTACCGGACGATGTAGCATT 1306390 24 100.0 42 ATGTAGCATT ........................ AAACCCGAACTTTTGCTATATATAGCATTTCGAACTTTTACG 1306456 24 100.0 39 AACTTTTACG ........................ CGACACCAGTCGGTATTATCTCTTCTTCCTTCAAACCAA 1306519 24 100.0 41 TTCAAACCAA ........................ GAAAAGTTTGGCAGAAAAAGAGTCTGGCTTTGCCAGAAAGG 1306584 24 100.0 40 GCCAGAAAGG ........................ AAGATTGTGGCTATTGCCGCACCGGCGTAAGCGTATTCTT 1306648 24 100.0 40 GCGTATTCTT ........................ CCAAATGCCCGTGAAACATAAACATAATCTCCAGTAGACC 1306712 24 100.0 40 CCAGTAGACC ........................ GCTAATTCCAATGCTAAGTTATCTAGGGCAACAAACAATT 1306776 24 100.0 38 ACAAACAATT ........................ TCACGTTTGCCGTACTCCACCAAAGATATGTATTGAAA 1306838 24 100.0 37 TGTATTGAAA ........................ GACTCGAAAGCCAAAGAGAACGAGAAATGGGACCGTA 1306899 24 100.0 38 TGGGACCGTA ........................ AGCATAAGACCAAGCGCAATTGCGAGGTAATCAAAAAG 1306961 24 100.0 38 AATCAAAAAG ........................ ACAACTCGTTCCTGGGTATCCCTGTTTTGTCTTCTAAC 1307023 24 100.0 39 GTCTTCTAAC ........................ TTTTGTCTCCAAATCGTTTGTCCAATCAAACTTAATTAA 1307086 24 100.0 38 ACTTAATTAA ........................ CCTTCAAACATAAGTTTGACAAATACGGTAGCCCCGCA 1307148 24 100.0 39 TAGCCCCGCA ........................ TTTTATCCATTTGATCCCTTCCTTATAATACAGACCTAT 1307211 24 100.0 38 ACAGACCTAT ........................ CAGATAGATTCCATAACTCACCTCGCCCAAGAAGACTG 1307273 24 100.0 42 AAGAAGACTG ........................ ATAAAATAATCGTTCAATATTTCAATGAAACTGGTGTTATGG 1307339 24 100.0 39 GGTGTTATGG ........................ AAAAGCCAATCCCAAGATACATCATCGCAGAAATATTCA 1307402 24 100.0 40 GAAATATTCA ........................ TTTTGATAACTAGATGTGGAACCGAAGTTTACTACTAGTT 1307466 24 100.0 37 ACTACTAGTT ........................ ACAGTACCATCAAAATTAGGATAGCCGCCACAAACCA 1307527 24 100.0 39 CCACAAACCA ........................ AAAGAAGCGATCAAAAAGCTGGATAAGGAGTTGAAGCAG 1307590 24 100.0 38 GTTGAAGCAG ........................ GGTTTCTCTCTTGTCGCCTCTGCCAGTGCATCATCTAG 1307652 24 100.0 38 CATCATCTAG ........................ TCTTGTGTGGTGTTAACGATCTCGAATCCTGGGGGTAG 1307714 24 100.0 39 CTGGGGGTAG ........................ ATAAAACATATGTATTGGTGCCTATAATTAATAGCCATC 1307777 24 100.0 39 AATAGCCATC ........................ TCCAGTTTCCTTTGCAACATTATCTATAAACGTGTCCTT 1307840 24 100.0 37 ACGTGTCCTT ........................ CTCACTATGTTTGCTGTCGAGAAGTTGAATAAGCAGT 1307901 24 100.0 38 AATAAGCAGT ........................ TCTCCTTTTCTTCTAAGCTAAGATAAGCCTGTTTAATA 1307963 24 100.0 39 CTGTTTAATA ........................ TTACCTCTACAACTCCCAGCTTCCTCTGTTGAATGCGGA 1308026 24 100.0 40 TGAATGCGGA ........................ TTCAATTTATGTGTTACTTTTAATAATTGTTTCACTGCCT 1308090 24 100.0 40 TTCACTGCCT ........................ TCGGATATGTCAGTCTTGACGAATTCGTATGCGTCTCCTT 1308154 24 100.0 38 GCGTCTCCTT ........................ AAATATAAACCATAAATCGTCAACAATTAGACTAACAT 1308216 24 100.0 40 AGACTAACAT ........................ CATGGTGGGGGGGCGTCAAAAATTCAGAAATATTTTGCAT 1308280 24 100.0 38 TATTTTGCAT ........................ AACTCCTTTGCAATCCTATATCTAGTGTAGCCGTCTAA 1308342 24 100.0 37 AGCCGTCTAA ........................ CTGCTCCATCAAACGGCCCCGTGAGGGATACTATGAA 1308403 24 100.0 40 ATACTATGAA ........................ AATTTGAACATAATTCGGCCTCGTCAGTTTTCCACAGATA 1308467 24 100.0 39 TCCACAGATA ........................ TCCCTAACTTAGGTTGGGGTAAAGAAATAGAACATAGAT 1308530 24 100.0 38 GAACATAGAT ........................ TTTACTGACAACGCCATCATACTTACTAGCCCAACTAA 1308592 24 100.0 40 GCCCAACTAA ........................ GTCCATTCTCCATTTATCTCAACCTTATCACAAATTTGGA 1308656 24 100.0 41 CAAATTTGGA ........................ TCAGTTCTAGAAAGAATTATTAGCATTAGATCTTCTAGACT 1308721 24 100.0 37 CTTCTAGACT ........................ CTCTCTATCCCAGATGGAATTCCAAAGGATCAAGCAG 1308782 24 100.0 39 GATCAAGCAG ........................ ATCTGAATTTCCTCAGCTTCCATTGCATAATTTATTCTA 1308845 24 100.0 40 ATTTATTCTA ........................ TATTTACCTTAATATTATGTATAATAGATAAGAGCTCCCT 1308909 24 100.0 38 AGAGCTCCCT ........................ ACTATGGACCTACTACAGGGCCTATCTGACTTTCTGTC 1308971 24 100.0 38 ACTTTCTGTC ........................ TTATTGTCAGAAAAAGAAATTATACTCCGATTAATAGC 1309033 24 100.0 40 GATTAATAGC ........................ GTCAAAATTGCCCAACCGAACGTTAGCAAAAATGCAGCAC 1309097 24 100.0 41 AATGCAGCAC ........................ TCCCTTTCAGATTTGCAATATGTTAGAGCGAGCTTCGCAAA 1309162 24 100.0 39 GCTTCGCAAA ........................ GCTGAATTGTAAAATTACGTTTATTACTTTCAGTCAACC 1309225 24 100.0 39 TCAGTCAACC ........................ GTTTTATTTATAAACGGCGGGTCTAGATAAAATACAGTT 1309288 24 100.0 40 AAATACAGTT ........................ TCACTCTTTCAGTCATCATTCTCTTTGCTGAGATTGCTCT 1309352 24 100.0 35 AGATTGCTCT ........................ GCGAAAACAATAGCAGGCGAAATAGAAGATAAAAT 1309411 24 100.0 39 AAGATAAAAT ........................ GCAATAGACAATATAAGGAAGAGCTTACCACCTAGAGGC 1309474 24 100.0 39 ACCTAGAGGC ........................ GCTTCTTGTCCCTGAACTCCTTCTTGAAATGGATTTATT 1309537 24 100.0 37 TGGATTTATT ........................ TTTCGTATAAGGACCAGAACGGCAATACCCAAACTGT 1309598 24 100.0 37 CCCAAACTGT ........................ CTACTACATCATCCTCTACCACGCCAAGCCAACAACC 1309659 24 100.0 38 GCCAACAACC ........................ ATCTAGCGTTGTCTCTGCCGTTATATATTTGAAAGTGT 1309721 24 100.0 41 TTGAAAGTGT ........................ ATCGCTGATCCAGAACCACGTGGCGAATACAGGAAGAACTA 1309786 24 100.0 39 GGAAGAACTA ........................ ATCAAAAGTCCGCTATGGTCTAACGGTGTAAATAATTCT 1309849 24 100.0 37 AAATAATTCT ........................ AATTGGATCCCTACGGTTGACGGATCACCGAAAGTGT 1309910 24 100.0 39 CCGAAAGTGT ........................ ATCATATTTTGAATTCTCTTATACAGAAATCTTTGATAT 1309973 24 100.0 41 TCTTTGATAT ........................ ATAGCTATATATGGAAATGTTCCAGACGCGGAATATGTTGC 1310038 24 100.0 39 AATATGTTGC ........................ AAGCCTACACAGGATAGGATACTCAAATTATATGAAAAT 1310101 24 100.0 42 ATATGAAAAT ........................ TTTGCGCATTTACTTTTGTATGAGCTAGGCTATTTACATCAT 1310167 24 100.0 37 TTTACATCAT ........................ CTGAAATATCCTTCAAATTGATTTGCCAATAAATTAA 1310228 24 100.0 37 AATAAATTAA ........................ TGTTCTGTCGTTACTGTCGTAAAGCACGTCCTATTAT 1310289 24 100.0 38 GTCCTATTAT ........................ ACAGTGCAGAAGTCTAATCCAAATTATTCTACTTTAGC 1310351 24 100.0 39 CTACTTTAGC ........................ TCCTTGGAGATGTTGATGTTTTATACGGTATTATGTGAA 1310414 24 100.0 38 ATTATGTGAA ........................ GCACAATTCGCCAACGATTTCGGTTCGCTTTATACCTT 1310476 24 100.0 41 TTTATACCTT ........................ CAAATTTCGGCGAAAATTGTACCGAATTTCGGCATTGCTGG 1310541 24 100.0 40 GCATTGCTGG ........................ AAGATCATGGTATTGATATTCAAAAACATTATTCAGAGTG 1310605 24 100.0 42 ATTCAGAGTG ........................ ATTAGAAAAGTTTAAGATTACGCATGCAAATATGTTTTTGAT 1310671 24 100.0 39 TGTTTTTGAT ........................ TTCTGTTTCGAAGAAAACCCGCCTCAGATTCATTATGGG 1310734 24 100.0 39 TCATTATGGG ........................ AAATCAAACGGAAACTCCCCGGATATTATCATGTCTAAA 1310797 24 100.0 37 CATGTCTAAA ........................ CCTCATCGTAAACATGCAATCTTGCATATTCAGTGTA 1310858 24 100.0 39 ATTCAGTGTA ........................ GCGATATATGTTATAAGAGGAGAAGGGACTTTACCCCCT 1310921 24 100.0 41 TTTACCCCCT ........................ ATATACATCGCCGGTTTTATAGCAACTGCACAGCAACAAAT 1310986 24 100.0 38 AGCAACAAAT ........................ GAAGTTGCAAAAATTGCCAATGTTTTTTTCAAACGCGT 1311048 24 100.0 39 TCAAACGCGT ........................ ATTTATGATGAAAATAGGAAATTTTTCAGAAGAATTATA 1311111 24 100.0 37 AAGAATTATA ........................ AAAAGTTTAAATACCCGAAGCCACAAAGGTAAAAATA 1311172 24 100.0 40 GGTAAAAATA ........................ CGTTCTAGAGCTAAACGATGCATACGCGGTGGTACAACTA 1311236 24 100.0 41 GGTACAACTA ........................ ATTCGGGGAAAACTTATGCATTATAAGAAGAAGAGATATTT 1311301 24 100.0 40 AGAGATATTT ........................ TCAAATAAGGAACAACTCTGGGTAAGCCCACAATACGCAA 1311365 24 100.0 38 CAATACGCAA ........................ CTTAGCGTCTCAACCTGAACCAAACTTCCTAGATCAAC 1311427 24 100.0 38 CTAGATCAAC ........................ TAAACTAGATCCTTATATTTCACGTAAATGTAAAGGGG 1311489 24 100.0 38 TGTAAAGGGG ........................ TAAGGAGTAAGCTAGCACTAGCAATAGCGGTTGCAATA 1311551 24 100.0 39 GGTTGCAATA ........................ GTTCATCAGTTCTACCTTTTGGTCCAAAGGCTGATCCAA 1311614 24 95.8 GCTGATCCAA ..G..................... ATCTTGATGA ========== ====== ====== ====== ========== ======================== 96 24 38 GATAATCTCTTATAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.00%AT] # Reference repeat match suggestion: F [matched GATAATCTCTTATAGAATTGAAAG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [393,491] Score: 0/0.18 # # Final direction: F [5.68,0 Confidence: HIGH] >NC_002570 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 355361 32 100.0 34 ACTGGGCGCT ................................ TTGACGAGATATACACGAAGAATGTACCTGAAGG 355427 32 100.0 35 TACCTGAAGG ................................ CCTTTGACGGAGAGGGGAACAGGAAATTAGAGAAG 355494 32 100.0 34 ATTAGAGAAG ................................ GTTGCGCACCGCTCCTTGCGGCGACGTGTCGGGC 355560 32 100.0 36 CGTGTCGGGC ................................ CCTACCGCGCGCCACGTCGTTAAATCCTCTAGCGTC 355628 32 100.0 33 CTCTAGCGTC ................................ TAGTATGTCGCGCAGCCTTGTCGTTACTCCTTC 355693 32 100.0 36 TTACTCCTTC ................................ CAAGGCGTCGCGTCCGTAACCTCCTCGTACAGACAA 355761 32 100.0 37 GTACAGACAA ................................ AGATTTTAGGATACGGTAGATTTCCTCGAACACACGC 355830 32 100.0 35 GAACACACGC ................................ CCTTATGAATGGATGGATAGGAACGGAAGAATGTC 355897 32 100.0 36 GAAGAATGTC ................................ GTGCGGTAGATGATCCAGACTTTGATCGCCGTAATT 355965 32 100.0 36 CGCCGTAATT ................................ GAAGTATGACAAGTTTGTAGGGCTTGAAAATTCATG 356033 32 100.0 35 AAAATTCATG ................................ TATCTGTTCGACCACTTCTACATGGTCGTGGTATT 356100 32 100.0 34 TCGTGGTATT ................................ CATTCAAACAGAACAAGGGATTTTCGAACCAGAA 356166 32 100.0 34 CGAACCAGAA ................................ GCCATGAATTTAGCCGTAAGAGACTTCAAACTGA 356232 32 100.0 TTCAAACTGA ................................ CCTTATCGTC ========== ====== ====== ====== ========== ================================ 14 32 35 GTCGCACTCTTCATGGGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [6,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [235,137] Score: 0/0.18 # # Final direction: F [4.87,0.64 Confidence: HIGH] >NC_002570 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 378211 32 100.0 35 CCTGGGCGCT ................................ AAGAGAGGAGGTTACGCTTTGACTGGCGATACGTT 378278 32 100.0 35 GCGATACGTT ................................ TATCAAATTGCCAGTAGATGTTGAGATAGTCGACG 378345 32 100.0 34 ATAGTCGACG ................................ TCCGATCGACGGTCTTGTGAATCTTGTAAAAGAA 378411 32 100.0 36 TGTAAAAGAA ................................ CGTCTAATTTTAAAGTGAACTTTTCAAGTAATTCAT 378479 32 96.9 33 AGTAATTCAT ............G................... ACCAGTTGTCATTGGTCTATCTCACCTCCCCTC 378544 32 100.0 36 ACCTCCCCTC ................................ AAGATTACCGAAAATCGTCGTAAACTTGTCGCGTAC 378612 32 100.0 34 TGTCGCGTAC ................................ CTTACTTGGAAAGGGATTGCTATGACATACGAAA 378678 32 100.0 37 ACATACGAAA ................................ AGCAGCTCACCGGCCAAGTGCAAGACACTACAGCCGT 378747 32 100.0 35 CTACAGCCGT ................................ GCTTGCGTCATGTCGCGGAAATAGACGAGGTTTAG 378814 32 100.0 36 CGAGGTTTAG ................................ TCTAAATGATTTTAATTGCACAAAAAAGACCGAGTT 378882 32 100.0 AGACCGAGTT ................................ CTTATGTTTT ========== ====== ====== ====== ========== ================================ 11 32 35 GTCGCACTCTATATGGGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.12%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [277,183] Score: 0/0.18 # # Final direction: F [4.87,0.27 Confidence: HIGH] >NC_002570 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 366106 32 100.0 35 GATTTTCGCT ................................ ATTGAGGTAGGTATTGATTCGTTGGACATGATCAT 366173 32 100.0 34 ACATGATCAT ................................ GCGACATCATCCGACCCGCCAAAGACAATGTTTA 366239 32 100.0 35 ACAATGTTTA ................................ ATCAACATCTATGTGGCTGGAATTTGGCTGAAATC 366306 32 100.0 33 GGCTGAAATC ................................ CTCTGCTACCATCAAGTTTTTCTTGTACTTCAC 366371 32 100.0 35 TGTACTTCAC ................................ ATTCCTCCTACATTTTTTTACGTGGTATAGTCCAC 366438 32 100.0 35 TATAGTCCAC ................................ AAGGTTGGCTGTCATTTCGTTAACAGAAATTTCCG 366505 32 100.0 34 GAAATTTCCG ................................ TCGAAAGTTTCGAGGAGTCTAACGGAGCGGAAGA 366571 32 100.0 35 GAGCGGAAGA ................................ CGCCCACTTACGAATAACAGCAAGAACGTGCATAA 366638 32 100.0 35 ACGTGCATAA ................................ AAGAACTCCGTCAGTAACAGCACGAGCTAGGTTAA 366705 32 100.0 34 GCTAGGTTAA ................................ AATGCGTTGCACCCATCCGCCAGATACGAGACGG 366771 32 100.0 34 TACGAGACGG ................................ TTCTTTTGTCCATCGTTGGTGTTTTTCCATACAC 366837 32 100.0 34 TTCCATACAC ................................ TTTTGATGAACACCTATTGACATTAGGAACGAAA 366903 32 100.0 35 AGGAACGAAA ................................ GGCCACTCTCGAAATCAATCAACCATGTGCTAGAG 366970 32 100.0 34 TGTGCTAGAG ................................ GCTTTCGACCTGATACGCTTCTTCGAACCACGCC 367036 32 100.0 34 GAACCACGCC ................................ ATTATCGTTAGGGTAGGGGTTACTATGAGATGAC 367102 32 100.0 34 ATGAGATGAC ................................ CTAACTGCAACGTTATATACGCGGGCTGTCTTGA 367168 32 100.0 33 GCTGTCTTGA ................................ TGGTGTGGAGTATGGTCGTACTGTTCATCAGAC 367233 32 100.0 36 TTCATCAGAC ................................ CCTTTGCGTTGATGTGCTCCCTTACACTGTGATTCG 367301 32 100.0 35 CTGTGATTCG ................................ CGATCTCTTGATTAAGGTAATCAAGTTGCCTCTGT 367368 32 100.0 33 TTGCCTCTGT ................................ GTCTAGCGTCTAATTAGACGCTACCACTGTAGT 367433 32 100.0 35 CCACTGTAGT ................................ ACACTGACCGCCTCCTATTTTTCAAAAGGGAAGTT 367500 32 100.0 34 AAGGGAAGTT ................................ AAATCCGAAATCCATTCCCGCTCGAAAAATAGGT 367566 32 100.0 35 AAAAATAGGT ................................ CATTCTTCACGCTGTCTTTTCCATCTGTAGCATGT 367633 32 100.0 34 TGTAGCATGT ................................ ACGAGAAGAACAAGAAACTACGTTGGTTTTTGAC 367699 32 100.0 34 GGTTTTTGAC ................................ TGATCGTTAAACTCCTCTAGCACTTTATCAGGTG 367765 32 100.0 35 TTATCAGGTG ................................ TCGTCCGCCACTTCCGCCTGTAATTTCGGAATCTC 367832 32 100.0 36 TCGGAATCTC ................................ CAAAGTGATCGGATCATTCGTTTAATCCCTCCCCTT 367900 32 100.0 33 CCCTCCCCTT ................................ ATCTCCCTTAAGAATTGTGATAGCTTGCTTTAA 367965 32 100.0 33 CTTGCTTTAA ................................ ACTTTAGAATTACACAAGCGTGCAACAGGAGGA 368030 32 100.0 35 AACAGGAGGA ................................ GCTCCTTCCAGTCCGTAGGCTGATCACGGGGAGTG 368097 32 100.0 33 ACGGGGAGTG ................................ TAATCGTGTGTATAAATTTAAATCTGCTTCTCG 368162 32 100.0 33 CTGCTTCTCG ................................ TGACCACATGCCTACCTTCTCTTGTTGAGCTTG 368227 32 100.0 36 GTTGAGCTTG ................................ TAGGTATGAGGTTTTGTATTCCTCATCCGTCTTCAT 368295 32 96.9 35 CCGTCTTCAT ....................A........... AATTCTTATTCCCGCAATCTCGGCCATACGCAAGC 368362 32 100.0 33 ATACGCAAGC ................................ GGAAATCTCTATTGGTGAGAAAAAGGGGAAAGG 368427 32 96.9 AGGGGAAAGG ...............A................ AAGTCCTCCG ========== ====== ====== ====== ========== ================================ 36 32 34 GTCGCACTCTTCATGGGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [6,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [184,424] Score: 0.18/0.18 # # Final direction: F [5.55,0.55 Confidence: HIGH] >NC_002578 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 846049 29 100.0 37 NNNNNNNNNN ............................. AGTTCGTTCAGGCTGAGGGATAAGACCGAAAAAAATG 846115 29 100.0 38 NNNNNNNNNN ............................. ACGAGTGCCGATGCAATCAAGAACGAAGAGGACTATAA 846182 29 100.0 36 NNNNNNNNNN ............................. TCTCACAAGCTTCTACGACCGAGACTGCATCGCCTT 846247 29 100.0 36 NNNNNNNNNN ............................. TTCTCTGCAGTCATGGTCAGATTCAGTCATAGCAGA 846312 29 100.0 36 NNNNNNNNNN ............................. TTGGAAAGATCCGTAAGGTCTTTCTGCTGCAAATAA 846377 29 100.0 36 NNNNNNNNNN ............................. AGCGACACCTGCTGGGTCGGGTTGTACAAGACAACG 846442 29 100.0 36 NNNNNNNNNN ............................. TTCCTCCTCGCCATCATCTTCGACTACCGTTCGCTC 846507 29 100.0 36 NNNNNNNNNN ............................. GTTTACGGCGATCGAAACTGAAGCAGTCTCACCCTG 846572 29 100.0 36 NNNNNNNNNN ............................. AGAAGAGATATATCCGGAACAACTACGGGGCTACTA 846637 29 100.0 36 NNNNNNNNNN ............................. ATATATATGAACGAAGTGATATATACCGGAAACCGG 846702 29 100.0 35 NNNNNNNNNN ............................. CACGTTGACGGTGAAGTTCTGGACGTCAGTATAAC 846766 29 100.0 37 NNNNNNNNNN ............................. TCGGAAATAAAGCGTATGCTTGATGAGGGATGGGTCT 846832 29 100.0 37 NNNNNNNNNN ............................. AATGGGGATAACGGCAATTTAGAAGTGGGTTCAACGT 846898 29 100.0 37 NNNNNNNNNN ............................. TAGCCACCTTTCCCATCTTTATGGCCAGGAATGAAGA 846964 29 100.0 39 NNNNNNNNNN ............................. AAGTACATCGCATTCTCAACTATGGCGAAACCCATGCCG 847032 29 100.0 36 NNNNNNNNNN ............................. AGTAGAGAAACTCTTGAGAAACTGCGTTCCGCGAAG 847097 29 100.0 39 NNNNNNNNNN ............................. ACGATATCCTCATCGCAGAACCCGACCGATGTGGGCAAG 847165 29 100.0 38 NNNNNNNNNN ............................. ATCTGACCAACTCAAACACCACAGGCACACCCTTCAAC 847232 29 100.0 35 NNNNNNNNNN ............................. GTACTTCCCCGGTGGCGAGCAATACAGCGGAAACA 847296 29 100.0 37 NNNNNNNNNN ............................. AGACGTGGCACCGCTTATCGCCGACCCGCTTCCAGAC 847362 29 100.0 36 NNNNNNNNNN ............................. AAAGTCACGCTGTCACCGACGTCCGTTGGGTTCTGG 847427 29 100.0 38 NNNNNNNNNN ............................. AATCACCAAAGGAATAGAAGAAACCGCCTCCATTACGG 847494 29 100.0 36 NNNNNNNNNN ............................. TAATTGTACGGAGAGGTGCCTCCTGATACCGAAGCA 847559 29 100.0 37 NNNNNNNNNN ............................. GATATATTCGGCTGCAACCTTCCTGAACATATCTTTG 847625 29 100.0 37 NNNNNNNNNN ............................. AAAATATGGGGTACAAGACCGAAAGAAGGATAAGGGA 847691 29 100.0 37 NNNNNNNNNN ............................. AGTTGGTAAAGTTTTTGAAATGGAATACCAGACTAGC 847757 29 100.0 38 NNNNNNNNNN ............................. TTTTTGTAGATGTTCTAGATTTGGAGGACTGGATTTAA 847824 29 100.0 39 NNNNNNNNNN ............................. ATTTTGATCTGGGCGGATGCTCCGCTGTATGATGATGTT 847892 29 100.0 37 NNNNNNNNNN ............................. ATTTATACGGACACGGACAGTTTCTTCGTGGTAAACA 847958 29 100.0 37 NNNNNNNNNN ............................. AATGTGCGGAATGCTGACGCCGGCGCTGATATTCCCC 848024 29 100.0 37 NNNNNNNNNN ............................. GTTAAGCTAAACTTAAAGACCGATGAACTGGAAATTG 848090 29 100.0 35 NNNNNNNNNN ............................. ATGAGTGGCAAATATATCATGAAATCGATGAGTTT 848154 29 100.0 39 NNNNNNNNNN ............................. ATTGGAATCACGGTGTCGATCTTAATAACAGATTTGGCG 848222 29 100.0 38 NNNNNNNNNN ............................. CCACAAGTGAGATCGGCATAGCCCCTGCATAATAGCTA 848289 29 100.0 35 NNNNNNNNNN ............................. CCAGAGCTTCGGCTTCTCAACCTCCGGATACGGGA 848353 29 100.0 37 NNNNNNNNNN ............................. GCGAGAATTCAAAGCCATATATATTATCGGAAAGTCT 848419 29 100.0 39 NNNNNNNNNN ............................. TTTATGGCTGAAATAACGGGGAATGACCCCAAATATCGT 848487 29 100.0 37 NNNNNNNNNN ............................. TACACATTCGGCTCTTCCTTAAGCTCCGCAACGCTGT 848553 29 100.0 37 NNNNNNNNNN ............................. AGTCTTCATTGCTTTACCCCCATAAATCAGATCCTCC 848619 29 100.0 38 NNNNNNNNNN ............................. CTGGAACGTGATCGACTGCGAATAGCCATATTGATCCG 848686 29 100.0 37 NNNNNNNNNN ............................. TTTGTTCAGTTCCTTCTTTGAGATCTCGAAAACTATT 848752 29 100.0 40 NNNNNNNNNN ............................. TTCCGCAAGCACTGGGGGATCCTGAATAACAGAAGAGGCG 848821 29 100.0 35 NNNNNNNNNN ............................. TGCACGCCTGCCCTGAGATGAATCCTCTTCTTCCT 848885 29 100.0 36 NNNNNNNNNN ............................. ACACCTGATCCGACCGAACACCCCTAAAATGAATTA 848950 29 100.0 36 NNNNNNNNNN ............................. GTATGATGCCTGGACAGTCTGCCCCTGGTCAAATGT 849015 29 100.0 34 NNNNNNNNNN ............................. AGGTTCTGGAGTGGCTGGCTTATCGCGACTGAAT 849078 29 100.0 1 NNNNNNNNNN ...........A............A.G.. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 47 29 36 GTAAAATAGAACCTTAATAGGATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.41%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.20,-1.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [700,215] Score: 0.18/0.18 # # Final direction: F [5.46,0 Confidence: HIGH] >NC_002663 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 362647 28 100.0 32 AATTCATTTA ............................ AAAACGAAGCCGAAAGATAAAAATATTAAAGA 362707 28 100.0 32 ATATTAAAGA ............................ ATGAAAAACATTGATGTGCACTGTCAGATTTT 362767 28 100.0 32 GTCAGATTTT ............................ GCCTTATTCTAAAAATTGGCGCATATCAGGTG 362827 28 100.0 32 ATATCAGGTG ............................ GTAAAAAACCTTTGTGCACTTAGTGAAAGCGG 362887 28 100.0 32 GTGAAAGCGG ............................ ATATAAAAACTCTGAAAATACACTGTGCCTTG 362947 28 100.0 32 CTGTGCCTTG ............................ TCATCAGTGGATTAGCGAGCGTTGCCGGCACA 363007 28 100.0 32 TGCCGGCACA ............................ ACATTCCGACTATGTCTTCATAACCGCATGAA 363067 28 100.0 32 ACCGCATGAA ............................ CACGGCGGGAAGTAGTATTTTGAATCTTTCTG 363127 28 100.0 32 AATCTTTCTG ............................ ATGCGAATTAAGTTTAAAAACAACTCGTCGAT 363187 28 100.0 32 ACTCGTCGAT ............................ ATTAATCAAATGCTTACCAAGGCTACTACTAA 363247 28 100.0 32 CTACTACTAA ............................ GAGCAATTCACGTTGTGCATAACGCACGTTTA 363307 28 100.0 32 CGCACGTTTA ............................ GTCAGATATTTTTACAAGAATGCCTGCTTGGA 363367 28 100.0 32 CCTGCTTGGA ............................ GCACTTTGTGCATCGGCTTTTTTATTGCTCCG 363427 28 100.0 32 TATTGCTCCG ............................ AATCTCTAATTGTTCTTTCCGCTCTGTCATTT 363487 28 100.0 32 TCTGTCATTT ............................ GAACATATCCAATTTTAATTTGCTGATTTATT 363547 28 100.0 32 CTGATTTATT ............................ TTCCCAATTCGAGTGGTATTGGCTTGGTAAAT 363607 28 100.0 32 CTTGGTAAAT ............................ GTCAAGTGTTTGAAAATATGCTCTACGCCTAC 363667 28 100.0 32 CTACGCCTAC ............................ GCACTTGATCCGCCACATCCTGCGGAATGGTT 363727 28 100.0 32 CGGAATGGTT ............................ TTAATCCCAAAGTTTTAATGAATCTTTTTTGA 363787 28 100.0 32 TCTTTTTTGA ............................ ATAGCGGCTGAACTCTCAAAAGATTGACCGAG 363847 28 100.0 32 ATTGACCGAG ............................ TAAACAAACAAGCTAGAGATAATCCCCAGTTA 363907 28 100.0 32 TCCCCAGTTA ............................ AGCTGGGCGGATTAGAGAATTTACGGTTTAAC 363967 28 100.0 32 ACGGTTTAAC ............................ GTTTGAGAAAAAGGTGCTTTGCTCGACTTGTT 364027 28 100.0 32 TCGACTTGTT ............................ AACCGATCCAACTCACCATGGAGGAAGCGAAT 364087 28 100.0 32 GGAAGCGAAT ............................ AAAAACCGATCTTGTGTACAAGTATCAAAAGA 364147 28 100.0 32 TATCAAAAGA ............................ TTGGTGATTCGTACAGTTGAAATCAACGGCAC 364207 28 100.0 32 TCAACGGCAC ............................ AATTTCAATCATCTCGAAAATATCTTTACAAG 364267 28 100.0 32 TCTTTACAAG ............................ ATTGATTGAGAGTGGATATGTTTTCTCACCGA 364327 28 100.0 32 TTCTCACCGA ............................ TTTCAGTCTCTGACCGCCAGCATAGACCCAAC 364387 28 100.0 32 TAGACCCAAC ............................ GACCCCATTGGTCTAATTTCGCCCACGGGATT 364447 28 100.0 32 CCACGGGATT ............................ TTCCGCATATTCAACCGTATTATCTTCAGTTG 364507 28 100.0 32 TCTTCAGTTG ............................ GCAAGTGGCACTTGTGCGATTGAGCCGTATTT 364567 28 96.4 AGCCGTATTT ........................A... ACTCATAATC ========== ====== ====== ====== ========== ============================ 33 28 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:57.14%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.60,-6.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [78.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [142,171] Score: 0/0.18 # # Final direction: F [1.05,0 Confidence: HIGH] >NC_002689 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 109189 28 96.4 41 TTTCCTATAT -........................... TATTCAGAAAAGAGACGATGTTAGCTGGATCGAAATGAAGG 109258 28 100.0 38 GAAATGAAGG ............................ TCTTACAAATGTGGACACTAGGGGGATAGCTTTATCCA 109324 28 100.0 42 GCTTTATCCA ............................ TCCTTTAATTCAGATCTTTTATAAAGCGGGACTTCGTCAATA 109394 28 100.0 39 TTCGTCAATA ............................ GCTACATCACTGATGTCGATATATTCCGTGCCAAGTCGA 109461 28 100.0 38 GCCAAGTCGA ............................ CGACCGCCGTGGACGGATTTTCGACAACTACGTTCTGG 109527 28 100.0 35 TACGTTCTGG ............................ CTCATCGTTCAAGTGGACGGTGAGAGATATGTCTA 109590 28 100.0 44 GATATGTCTA ............................ GAATAAAAGACTTTGATCAAGACAAGGTTCACTTCTATCGACTT 109662 28 100.0 42 CTATCGACTT ............................ TCTACGTCCTCTATCCCGACGACAACAACGAATATTATGCTT 109732 28 100.0 37 TATTATGCTT ............................ TGGGATTATATCCTGGAGGAAAAAATGGAGACGAAAA 109797 28 100.0 38 GAGACGAAAA ............................ AAGAAGTTTATGATAGCTACGATGCATCACGGGTTTTA 109863 28 100.0 37 ACGGGTTTTA ............................ TCCAAGGATGAGGCAAGATCACGAAGATCGTCTTTTA 109928 28 100.0 37 TCGTCTTTTA ............................ CTAGCGCTGAATACGAGCAAAATATGGAAATTCAAGG 109993 28 100.0 40 AAATTCAAGG ............................ TGATAGGGAAGAGAGACCTCGAATATTGGATCGATAACCT 110061 28 100.0 46 TCGATAACCT ............................ TCAAGGCTTTAAAGCAAAAGGTTTTTAGGTGCTGGAAGATAGAGCA 110135 28 100.0 40 AGATAGAGCA ............................ GATATTTCATGATAGCGATCAGCTAACGTTTGTGAATGTT 110203 28 100.0 39 TGTGAATGTT ............................ AGAAGACGTTCCGGAGGAATACATAAGGGGCATTTTCGA 110270 28 100.0 42 GCATTTTCGA ............................ GGTGTCAGCGTGTCGTTGTCATGCATCTCAATCAGCCTTACG 110340 28 100.0 45 CAGCCTTACG ............................ AAGGTGAGAGAAAATGTGTTTCACACCAGTTGGATTTGTAAGATA 110413 28 100.0 TTGTAAGATA ............................ CCGTATCAAT ========== ====== ====== ====== ========== ============================ 19 28 40 CTTCCATACTAACTAGTACATCTTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.60,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-80.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [323,211] Score: 0/0.18 # # Final direction: R [0,0.78 Confidence: HIGH] >NC_002689 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 121537 28 96.4 43 GGAGCTATTG ...........G................ TGGACAATCTGCCGAAAGCAGCAAAGACTGTGAGTACAATAAG 121608 28 100.0 40 GTACAATAAG ............................ GAAAAAAATCCTATTCGGCTATTTTCACTCAAATTTATAT 121676 28 100.0 42 AAATTTATAT ............................ GACTCACGCAATGGAGATGCGGATAGTATACTTTTAAACGCT 121746 28 100.0 40 TTTAAACGCT ............................ GCAGAGGCATATCCAAAAAAAGGCAAGGTGTAATTAGACC 121814 28 100.0 42 TAATTAGACC ............................ AAGGTTTTTTATTACTCGCTCTTCAGGAGCGCATGGCAGGGC 121884 28 100.0 42 ATGGCAGGGC ............................ CAGGTACGCACAAAAAAGGAGAGCAGAATATGCAGCGGATGA 121954 28 100.0 44 CAGCGGATGA ............................ GATGTCCAATAGAGTAGAAAAAGGTGTTAGGGAGGCCCTCAGCT 122026 28 100.0 44 GCCCTCAGCT ............................ TAGAAAATACTGTTCATTGATTGCAGACCAATTGAAAGACTCTT 122098 28 100.0 42 AAAGACTCTT ............................ AAGGGAGCAAGAGCTCTGCCTATTAAAGCTGATAAATCACAT 122168 28 100.0 45 TAAATCACAT ............................ CAGGTTCTATGTATCTCCATTGTGATTGGCATGCAAATTCTTATT 122241 28 100.0 42 AATTCTTATT ............................ AACAAGGTGTATGTTCTCAATTCGGCAGCACTGCCGAATGTA 122311 28 100.0 38 GCCGAATGTA ............................ GGATATTACATGGGAAAAGAGAACATACAGAAAATACA 122377 28 100.0 44 AGAAAATACA ............................ ACGAGTATGCTACGAAATTGATTTCAGAAGTATTCGAGGACTAC 122449 28 100.0 42 CGAGGACTAC ............................ TTAGGTATATCATATTAAGGTGAAAAAATGGATAAAAAAGAA 122519 28 100.0 42 TAAAAAAGAA ............................ AAGAGACTGTTAGAAAGCGGATTTATATCGGCTGTGGGGCAT 122589 28 100.0 TGTGGGGCAT ............................ CCGTATCAATA ========== ====== ====== ====== ========== ============================ 16 28 42 CTTCCATACTAACTAGTACATCTTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.60,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [65.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [1213,1165] Score: 0/0.18 # # Final direction: R [0,1.05 Confidence: HIGH] >NC_002754 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 1744007 24 100.0 39 AAAATCCTAA ........................ ATACTGCAAGCGAATTGGCGGAAAATTGGCAGCGACGTG 1744070 24 100.0 42 CAGCGACGTG ........................ TTATCTAATTTTAATAATCAAGGAAATTCATTAACTCAAATA 1744136 24 100.0 39 AACTCAAATA ........................ CCCATTCATCTCTTTCTTTGCAGCTTTGTTCTAACATTA 1744199 24 100.0 41 TCTAACATTA ........................ TGGTAAATAGCTCTGTTAGGCCCAGTTATTCCATATTCTGA 1744264 24 100.0 44 CATATTCTGA ........................ ATTTTCTAATATATCTAATTCACTCTGCGTATCATTATGGATAA 1744332 24 100.0 38 TTATGGATAA ........................ TTAGCCCAACAATTAACTAAAGATCCTGAAGCAGTCAA 1744394 24 100.0 AAGCAGTCAA ........................ AAATTTATCA ========== ====== ====== ====== ========== ======================== 7 24 40 GATAATCTACTATAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.00%AT] # Reference repeat match suggestion: F [matched GATAATCTCTTATAGAATTGAAAG with 91% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [75.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1320,613] Score: 0.18/0.18 # # Final direction: F [5.45,0 Confidence: HIGH] >NC_002754 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 1809772 24 100.0 40 TCATCTTCTA ........................ AACACATTGCTCATATAACTACACCATTCACTATTGCCTC 1809836 24 100.0 40 CTATTGCCTC ........................ ACAATGTATGACTATGGATATCAATGGAGCGTCGGCTTAA 1809900 24 100.0 40 GTCGGCTTAA ........................ CAAATAATCTAGCATTTTCTTCATAAAGTTCATTACATAC 1809964 24 100.0 41 CATTACATAC ........................ CTTAAAAGTGTTGGAGTTTGTGCAGTTAGTTGAATTTCACT 1810029 24 100.0 40 GAATTTCACT ........................ GTTATTCCTAATTGTTTTCGGAAATTATTTTGAGAATGAA 1810093 24 100.0 41 TGAGAATGAA ........................ GCCGTACTGACTTCTCCCCTGCCAGCGAGGGTTCTCCTCAT 1810158 24 100.0 40 TTCTCCTCAT ........................ TTCCCCACCATTATGTACCACTATTATGCTTCCATTTATT 1810222 24 100.0 40 TCCATTTATT ........................ ATGTTCTTTTTCCAGAACTGTAACTATAATTTTGTTGATA 1810286 24 100.0 41 TTTGTTGATA ........................ TATTTTTGCGTATTTACACGATTTATTTATTTCGCAGAATT 1810351 24 100.0 38 TCGCAGAATT ........................ AGTGATGGTACTACGACCGTGAAAATGAGTTGAAAAAA 1810413 24 100.0 37 GTTGAAAAAA ........................ CATCACGCAGAATAATGGTTCAGGTAACTTTTTAAGG 1810474 24 100.0 41 CTTTTTAAGG ........................ TGATTATATTCAAGGACAATATGTTGAAACGCCGATTTTAT 1810539 24 100.0 46 CCGATTTTAT ........................ AGATGCTATTGGAGGATTTCACCAGGTTGGGTTATAATGTCAAATA 1810609 24 100.0 39 ATGTCAAATA ........................ TCAGAGTTTTTTTATTTTTTCTATTTGAAATTAAGCACG 1810672 24 100.0 43 ATTAAGCACG ........................ TTGGGTGTTTTGTTTAGGTTTGAAAAAGATTATCTTATTTTCT 1810739 24 100.0 41 CTTATTTTCT ........................ CCAACGGCTCTTACGCCCTCCTCGGCATGTACAACGGGACG 1810804 24 100.0 48 CAACGGGACG ........................ AAGATACCACAACACTTGGAGTTAATGCATTATTGAATATGGATACAT 1810876 24 100.0 39 ATGGATACAT ........................ GGAAAGGCTAATGGAGACAAAAAGAAGTCTAAAAAGCAG 1810939 24 100.0 44 TAAAAAGCAG ........................ TTCTTCAGCTTCTTCCCAACGCTATATGTGCTATTAGGTGTAAC 1811007 24 100.0 41 TAGGTGTAAC ........................ CGGCACAGTACTACTATCTGAAAGTGTTGCATCTCCAAATA 1811072 24 100.0 38 TCTCCAAATA ........................ AACACGTCCTTTTTCATTTGTAATATCTGAACCTGGAA 1811134 24 100.0 GAACCTGGAA ........................ CCTAATATCC ========== ====== ====== ====== ========== ======================== 22 24 40 CTTTCAATTCTATAGTAGATTAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.83%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [139,4425] Score: 0.18/0.18 # # Final direction: R [0,4.68 Confidence: HIGH] >NC_002754 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 1811328 24 100.0 43 GAAGTGCGGG ........................ ATATTTAAAGTTTTTGCTCAACCAGTTAGGTAACAAGTATTCT 1811395 24 100.0 40 CAAGTATTCT ........................ AAAGCGGTTGTTTTCCAGTTCCAGAAACTGGAATTCTTAT 1811459 24 100.0 38 GAATTCTTAT ........................ GGATTTTTAAATGGAGTGAATTGATAAAATGATAAAGC 1811521 24 100.0 40 ATGATAAAGC ........................ TTGGTGGGGCGATGAACGGCAACGATATGTTGGACGTCAT 1811585 24 100.0 42 TGGACGTCAT ........................ CTGGAAAACAAATTGAAGAAAGTAAAAAAATTGAAATTTTAA 1811651 24 100.0 41 GAAATTTTAA ........................ GATAGAGAAAAGTTTATAAAGGAGAGTGAAGATATGTATAT 1811716 24 100.0 39 ATATGTATAT ........................ TCTAACACTTTATGATTTCAAGAACTTTGCAAGAAATAA 1811779 24 100.0 40 CAAGAAATAA ........................ TTAGCATGCGAAACAAATGAAGAATTCAGAAGAGAGTTAG 1811843 24 100.0 42 AGAGAGTTAG ........................ AAAGAATGAGGAAAGAGGCATTGGAAGGCATTGAAGAAGGTA 1811909 24 100.0 41 GAAGAAGGTA ........................ TGGAGATTTAATTAGATATCATCACTTCGTTCCTTTCTCTC 1811974 24 100.0 40 CCTTTCTCTC ........................ CTGTTACGCCGGTGCTGGAGGGTAAGTTAGTTGGAGAGCT 1812038 24 100.0 39 TTGGAGAGCT ........................ TTTCCCAGACTTAGTAAAGGACATTTGGAAGGTTCTAAT 1812101 24 100.0 40 AGGTTCTAAT ........................ ATGAAACAGAAAAAGTTAACATTTTAGACCACCAATTAAA 1812165 24 100.0 40 ACCAATTAAA ........................ AAGACCCCGACTTTTTAAGGTTTACAGATCCCGCAGAAAA 1812229 24 100.0 39 CCGCAGAAAA ........................ ATGAGGTTCGTCGTGTAGGGATTAATCCCGTGTCTAAAG 1812292 24 100.0 40 GTGTCTAAAG ........................ TAATTATCAATGGCAAACCGCATATAATTGGATGAGATTA 1812356 24 100.0 42 GATGAGATTA ........................ TTTACTACACATGTAATAAGTATGTTGATTATGGAATAGAAT 1812422 24 100.0 38 GGAATAGAAT ........................ TTGAACACGTGATATAGAACCAGTTGTTCTAATACGTT 1812484 24 100.0 39 CTAATACGTT ........................ AACAATAGCAATAGCTTTGCTTATAGTCGGTGTAATAAT 1812547 24 100.0 41 GTGTAATAAT ........................ TTGTAAAGACTAGGTAAAACTTTGTTATCATAATAGCAGTA 1812612 24 100.0 43 AATAGCAGTA ........................ AGGAGGGGCTATACGTACGATCACGAATGTAACATTATCGTGA 1812679 24 100.0 38 ATTATCGTGA ........................ AGTATCTGGCTTTTCGACACAAAACTTCCTTTACCAAC 1812741 24 100.0 41 CTTTACCAAC ........................ ACGACGATGCTATGTGTTGCACTGTATTTGATCACGGTTAT 1812806 24 100.0 38 TCACGGTTAT ........................ TACGGTTAAAAGTTGGCAAAAAGCTTAAATTTTTGCAT 1812868 24 100.0 37 ATTTTTGCAT ........................ CTTATGAGCCTCTTTGAGATGTGTCTCTGACTTCTGA 1812929 24 100.0 41 TGACTTCTGA ........................ ATAAATAAACTAGGTTTGTATTTATCACCTCCAACAATTCA 1812994 24 100.0 42 CAACAATTCA ........................ AAACGATAAATTAGCACTATATTATAACTATGATTCTACACA 1813060 24 100.0 46 ATTCTACACA ........................ AACTGTAACTGGTAGCCTTGGTCAGGTGTTACTGACAGTGTCGATG 1813130 24 100.0 40 AGTGTCGATG ........................ CAAAATGATATACATATAGTACCATCACCTAGCGCAAGAC 1813194 24 100.0 43 AGCGCAAGAC ........................ GGATATCCAGCAATTGCAACAGGTGGGTCGGGGATATCATTGC 1813261 24 100.0 40 ATATCATTGC ........................ TTTAACTATGACTTTTCAGAATACAACAATTTCGCCAATT 1813325 24 100.0 44 TTCGCCAATT ........................ ATGTATACAATAGATCATATGTTATATATAGAGAATGTACCAAT 1813393 24 100.0 43 ATGTACCAAT ........................ TCTTGTACAAACTCTCATACACGTTCATTGCAAAACAGTTCAT 1813460 24 100.0 37 AACAGTTCAT ........................ TACACTGTTGCTTTCCTAACGCTCTACATCGCGTTGT 1813521 24 100.0 39 ATCGCGTTGT ........................ TGCAGGAGGGCGAGGAAGAATGATAAAGATGGAGGAAAA 1813584 24 100.0 40 TGGAGGAAAA ........................ TTGTCCCTTCCATGGGCATTTGTCACTTTCACAAAACCTA 1813648 24 100.0 40 ACAAAACCTA ........................ ATAAAAAAAGAATTATAACTTATTCATCATTCTTTTAATA 1813712 24 100.0 42 TCTTTTAATA ........................ TTATAATCCCCGTGACACAGAAAGAATTTTAAATATCATAAT 1813778 24 100.0 39 ATATCATAAT ........................ TAAACTAACAAGTAAAATTATAACTCCTAACGGAATTGC 1813841 24 100.0 42 ACGGAATTGC ........................ TGACGATTATAACACTGAACATGAGTATGCAGTAAGTGAAGT 1813907 24 100.0 44 TAAGTGAAGT ........................ AGAATAATCAGTGATGAACAGTGTGAGAAACTTGTCCAAGTTTT 1813975 24 100.0 40 TCCAAGTTTT ........................ ATGATGTTGAAAATGGACTAAAACTTTTAGATGAAAAACT 1814039 24 100.0 41 ATGAAAAACT ........................ TGAACGGAACATCTATTTTTACTCCTAACATCATTCAATCA 1814104 24 100.0 42 CATTCAATCA ........................ AAATAATGATAAATAAGGATGAGGTGATAGTACAATGAAATT 1814170 24 100.0 45 CAATGAAATT ........................ AGCCCTCCAAAATCGTAAAACCTTGAATATATGAAGTTAAATTTA 1814239 24 100.0 39 GTTAAATTTA ........................ GTGCTGTAGGCTGTAGGACTGTCGAGGTAGCGTTTGAAG 1814302 24 100.0 40 GCGTTTGAAG ........................ AGAGTTAATAAACATTTCGAATCCCCACGCTAACGAAAAG 1814366 24 100.0 39 TAACGAAAAG ........................ ACAAATAACGAAACGAATAAATATAATAAATTATGAATA 1814429 24 100.0 43 ATTATGAATA ........................ TTGGTGAACCGGTGATAATATTCGTTACGGCGTCCAATACTGT 1814496 24 100.0 39 CCAATACTGT ........................ CCTTACCCTTCAGGAAGCTGCAGAAGATGGTGGAGTACA 1814559 24 100.0 44 GTGGAGTACA ........................ CATCCGTTACGCTGAGCATACTAAGATCTGTCCTATTTGCCATA 1814627 24 100.0 39 ATTTGCCATA ........................ TATGGGGGTCAGTGACACTTATTCCACCGTTCAGTATTT 1814690 24 100.0 41 TTCAGTATTT ........................ TGGAATTTTGAATTTTTTGCACCGCTCCAATTATTATTTGG 1814755 24 100.0 41 TATTATTTGG ........................ TTGTCTGTCGGTGAAGCAGTAGTATTTCTAAGAGGCCGTCC 1814820 24 100.0 37 GAGGCCGTCC ........................ TCTACTTCTGTCTTCTTAGCCATTCAGCTCACCTTTG 1814881 24 100.0 44 CTCACCTTTG ........................ GTAAGAATAATTTTACAAAATCTTAGTAATTATATAGTTTATAT 1814949 24 100.0 40 TAGTTTATAT ........................ CCTCGCTTTAACCGAGGTGTCTCGGTGACGCTTGCTCCGT 1815013 24 100.0 40 CTTGCTCCGT ........................ AGATTGGTGTATAGTAACAGAAAAGCAGACAACGAAAGGA 1815077 24 100.0 43 AACGAAAGGA ........................ ATGTTAGTTATCGGCGTTATAATGGGTATCGGAATCGGTGTAG 1815144 24 100.0 43 ATCGGTGTAG ........................ CTATTTTTGTCAATAATTTTTTTATTTTTGCATTTTTCGAAAT 1815211 24 100.0 41 TTTTCGAAAT ........................ GTAATCTTATTTCTGCGGTAAATTGAGATTATAGATGGTAC 1815276 24 100.0 39 TAGATGGTAC ........................ ATCATTTATGCACATTTCAACTCCATTTCCAATATGAAT 1815339 24 100.0 39 CAATATGAAT ........................ CCACGTTTTTTGTCTTAACTTTAATTGATTTATTAGAAT 1815402 24 100.0 41 TTATTAGAAT ........................ AAGGTCAATCCATTCTGGGGGCGTTAAACCCGCATCCCTGT 1815467 24 100.0 43 GCATCCCTGT ........................ GGCAGTGTTAGAATACTAACGGGCGAAGAAGAATGGGTTTATT 1815534 24 100.0 TGGGTTTATT ........................ AAGAAGAGAA ========== ====== ====== ====== ========== ======================== 66 24 40 CTTTCAATTCTATAGTAGATTAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.83%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1695,25] Score: 0.18/0.18 # # Final direction: R [0.45,4.5 Confidence: HIGH] >NC_002755 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3116727 36 100.0 37 GTGAGGTTGG .................................... TTGTCTCAATCGTGCCGTCTGCGGTGACACGCTCCAA 3116800 36 100.0 40 CACGCTCCAA .................................... TCGACGATTGGGACATCGACATCGACGCGATCGTCGACGA 3116876 36 97.2 41 TCGTCGACGA ..........T......................... GTGATCTTCTCTCCTGGCGAGGTCAAGGAAATCGATGTGGA 3116953 36 100.0 36 TCGATGTGGA .................................... CACCAGGATCAGCGCCAAGCCAGTTAGCGCAATCCA 3117025 36 100.0 37 GCGCAATCCA .................................... CGGAGTCATCCGCGCGGGCCGGCGCGATTGTTGCCGG 3117098 36 100.0 37 TTGTTGCCGG .................................... CGGAGTCATCCGCGCGGGCCGGCGCGATTGTTGCCGG 3117171 36 100.0 36 TTGTTGCCGG .................................... TGGCGATTTACGACGCTGACGGGAACTCGTGCGAAT 3117243 36 88.9 29 TCGTGCGAAT ................................---- TCCGCGAAATTCACTGCGCGTTATTCAAG 3117308 36 100.0 41 GTTATTCAAG .................................... CCGAGCCGACCATCCGCATCACACCGAAAGGGTTGGCGCAA 3117385 36 100.0 36 GTTGGCGCAA .................................... ACGTGGGGAGAGGGAATGGCAATGATGGTCGACGAA 3117457 36 100.0 34 GGTCGACGAA .................................... TAGAAGGCGATCACTGGAAGCACGGCGCTTGCGA 3117527 36 100.0 36 GCGCTTGCGA .................................... TTGGTCAAAAGCTGTCGCCCAAGCATGAGGCAAAAA 3117599 36 100.0 41 GAGGCAAAAA .................................... ACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTATG 3117676 36 100.0 38 ACCCTCTATG .................................... GTGCAAGAATTCCGGGTTGCAGTGCAACACGGTTTTAA 3117750 36 100.0 ACGGTTTTAA .................................... TCTATGGACA ========== ====== ====== ====== ========== ==================================== 15 36 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [35.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [112,46] Score: 0.18/0.18 # # Final direction: R [0.18,1.42 Confidence: HIGH] >NC_002755 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3113903 36 100.0 38 NNNNNNNNNN .................................... TCGGGCACGGCCGAAACACCGCGCGAAGGGCGGTTCAA 3113977 36 100.0 40 NNNNNNNNNN .................T.................. TGGGAGGATGTCACTCGGACATAGCTGTCATCGGCGGTGT 3114053 36 100.0 40 NNNNNNNNNN ................................G... ATGGAGCAGTAGCGTGGCTGTGGTGTGGCGGGCGATATGC 3114129 36 100.0 37 NNNNNNNNNN .................................... TGCTGCACCTCCCGCACCCGGTGCGATTCTGCGTCCA 3114202 36 100.0 36 NNNNNNNNNN .............................C...... CCCGATAGTCGCGCTCGTCCATGTCCCACCATGAGG 3114274 36 100.0 35 NNNNNNNNNN .................................... TACCTGATAGAAGCCGGAAAGCTCCGTGCCGTCAG 3114345 36 100.0 38 NNNNNNNNNN .................................... AGGGCACTGGACCTGTATGAGGCACAGATGGCGTACTA 3114419 36 100.0 40 NNNNNNNNNN .................................... CCGGATCGGTTACCCACGCCGATTTACTGGCCATCGTCGG 3114495 36 100.0 35 NNNNNNNNNN .................................... ACTTGCGCGCACAACGCATCCGCCATCCACGGGGC 3114566 36 100.0 37 NNNNNNNNNN .................................... CTGAAAGGGGGACTGTGGACGAGTTCGCGCTCAAAAT 3114639 36 100.0 38 NNNNNNNNNN .................................... TTGAACACGCCGATACCTATTTGGTCGGGAGTGATAAA 3114713 36 100.0 35 NNNNNNNNNN .................................... TGACAGGGTGCGGTGGTCGCTGATCGGCTCCCCGA 3114784 36 100.0 37 NNNNNNNNNN .................................... CGGACTTGATCGACGCGAACCTGTCTGACGCGAACCT 3114857 36 100.0 37 NNNNNNNNNN .................................... GGCTGGAAAAGGGCGCGGGGCAACCGCATCGTCAAGA 3114930 36 100.0 36 NNNNNNNNNN .................................... GCGTTGTGGTCGTGTCGTGGAGCCTGTATTTCGCTG 3115002 36 100.0 36 NNNNNNNNNN .................................... CATTAGTTGGTGTTGTGATCGCTAAACGCCGGGGCA 3115074 36 100.0 38 NNNNNNNNNN .................................... CTATCCGCGGGAAGAGATCACGAATCCGGCGTCGAAGG 3115148 36 100.0 38 NNNNNNNNNN .................................... ATGCTGAGCTGAGGCGCCGGATGATGGTGGTGCTGAAG 3115222 36 100.0 35 NNNNNNNNNN .................................... TGACAGGGTGCGGTGGTCGCTGATCGGCTCCCCGA 3115293 36 100.0 1 NNNNNNNNNN .....................GAACC.C.CCGGTGA NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 20 36 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [3-13] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [38.3-38.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [150,28] Score: 0.18/0.18 # # Final direction: R [0.59,0.74 Confidence: LOW] >NC_002932 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1052108 32 100.0 34 NNNNNNNNNN ................................ GATGATAGATGATTAAAAGTCTAATAGATAGACG 1052174 32 100.0 37 NNNNNNNNNN ................................ ATTATGTGGTTATGCGAGGCGTTAAACATCGCCCGCC 1052243 32 100.0 34 NNNNNNNNNN ................................ AGGCTCGCTTTGTGAGGGCGGTACTCCAAGAGCT 1052309 32 100.0 33 NNNNNNNNNN ................................ ATGCGTTATGAGGACTTCCGATCAGCCTATTAC 1052374 32 100.0 37 NNNNNNNNNN ................................ ATTATGTGGTTATGCGAGGCGTTAAACATCGCCCGCC 1052443 32 100.0 40 NNNNNNNNNN ................................ TTATGCTTTTGTGTCTTTTGTCCGGCTTTTGCAATGTTTC 1052515 32 100.0 36 NNNNNNNNNN ................................ GCTTTAAGGTCAGCAACTTCACGTTGATGTGCGGTC 1052583 32 100.0 35 NNNNNNNNNN ................................ TTGAATGGGTCGAGCACTCACGTCCTACGACGGGC 1052650 32 100.0 33 NNNNNNNNNN ................................ AATGGTTCACAGCACGGGAGCGCCGCACAGGTT 1052715 32 100.0 36 NNNNNNNNNN ................................ CTGCTTTGCCGTACATCAGTGGCGAAGATGCTCGGA 1052783 32 100.0 33 NNNNNNNNNN ................................ TACTTTGCCAGGCGATCATCGAGAGTATAAAGC 1052848 32 100.0 34 NNNNNNNNNN ................................ GCGGTCCCTTCCAGTATCTCAGCAAGAGTTATGA 1052914 32 100.0 34 NNNNNNNNNN ....................A........... CGAGGAGTATATGAAGTCGCAGCAAGGTCTCTAC 1052980 32 100.0 34 NNNNNNNNNN ................................ TGATGTCTCCCGATCGCCTCGTCCCGGTATGGTC 1053046 32 100.0 33 NNNNNNNNNN ................................ CTTGACGCCCAGCTCTTGCCCCTTGCTCGCGTT 1053111 32 100.0 33 NNNNNNNNNN ................................ ATACCAAGTGGCCAAAGCTGCTCAAGAGATTCA 1053176 32 100.0 37 NNNNNNNNNN ................................ CACCTCGAGCATCTTGCTCAAACAATTTCTGGATTTG 1053245 32 100.0 33 NNNNNNNNNN ................................ GTCGGTATCCTTGAGCCGCTCGATGTCGTCGAT 1053310 32 100.0 34 NNNNNNNNNN ................................ GCCGATCCGGATATAAAGAGCGGGTGGAGAACGA 1053376 32 100.0 34 NNNNNNNNNN ................................ CGGTAGGTCGTAGCAGCTGATCGTCGCCGCCCCA 1053442 32 100.0 34 NNNNNNNNNN ................................ CCGCGGCGCCCTCATGAGTGACGCTGATCTGTTC 1053508 32 100.0 34 NNNNNNNNNN ................................ TAGAGCTGGGCGCTTGTCCCGATTGGGTCATCCG 1053574 32 100.0 33 NNNNNNNNNN ................................ TTGCCAATGTTAGCACAACAATATCAATCACAA 1053639 32 100.0 32 NNNNNNNNNN ................................ ACATATCTAGTGCCACCTCGAGCATCTTGTTC 1053703 32 100.0 37 NNNNNNNNNN ................................ GCCTGTACTGCTATGACGATAGTATCAGACAAACAAA 1053772 32 100.0 33 NNNNNNNNNN ................................ CTAAACGCAATTGCGATCCGCGTAACTTTACAA 1053837 32 100.0 34 NNNNNNNNNN ................................ AGGTTCGATTTGTTAAGGCGGTACTCCAAGAGCT 1053903 32 100.0 35 NNNNNNNNNN ................................ CCGACTACGTTTATCAACGGCGTTCCAAGCGCCGA 1053970 32 100.0 35 NNNNNNNNNN ................................ AAGAGGGCGATCAGCAAGAGACGCCAGCGGCCGAA 1054037 32 100.0 34 NNNNNNNNNN ................................ AGAAATAAATCTCATCCATTAACTTAACTTATCA 1054103 32 100.0 33 NNNNNNNNNN ................................ TCAGGCCGGAGAGCGCGCGGACACGCTGGTCGA 1054168 32 100.0 34 NNNNNNNNNN ................................ ACCGCTCCATGTGTCCCTTGAGCGACGGAGACCA 1054234 32 100.0 36 NNNNNNNNNN ................................ CATTGACAGGGTCGCCCCAACGGTACTTCGGGCCTC 1054302 32 100.0 35 NNNNNNNNNN ................................ ACCTGTACGACGCAACACCGGCATCATAACGCGAT 1054369 32 100.0 35 NNNNNNNNNN ................................ ATGCTCCGCTCCCGTGCTGTGAACCATTTCATGGA 1054436 32 100.0 35 NNNNNNNNNN ................................ GTCATTATTGACAAGCCCTGCGTCGATCATGGCCA 1054503 32 100.0 36 NNNNNNNNNN ................................ CCTTTCGATCGCCCGCAGGGTTGTCTCTGAGATCCC 1054571 32 100.0 34 NNNNNNNNNN ................................ AAGCGACTGAAGACCAAATTGTTGAAGCCATCAA 1054637 32 100.0 33 NNNNNNNNNN ................................ GATTGATCAAATTGACCTATTTCGTACAATACA 1054702 32 100.0 35 NNNNNNNNNN ................................ GGCGCTCCGGATGGGTCATGAGCTACGACCCGAGC 1054769 32 100.0 35 NNNNNNNNNN ................................ TATGCGCAACCGCTGGATATTTGGCACTTGGCGCA 1054836 32 100.0 34 NNNNNNNNNN ................................ ACTTCGCGGAAGGCAAGCGATACCCGGTGCGGCT 1054902 32 100.0 34 NNNNNNNNNN ................................ TCTCGATCGCCCGCAGGGTTGTCTCTGAGATACC 1054968 32 100.0 33 NNNNNNNNNN ................................ CCTAATATGTCTTTACATTTACCAGATTTTCAA 1055033 32 100.0 1 NNNNNNNNNN ................................ NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 45 32 34 GTTTCAATCCACGCGCCCGCGCGGGGCGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [4,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.30,-9.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [126,180] Score: 0/0.18 # # Final direction: R [0.27,5.28 Confidence: HIGH] >NC_002932 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1877373 28 100.0 33 CGCATGGGAC ............................ TTTCTACCCATTACCAACACAAGGGGCGCGCGT 1877434 28 100.0 36 GGGCGCGCGT ............................ CAACAACAACCAAAAAACTCAAAACTTACGGAGTCC 1877498 28 100.0 33 TACGGAGTCC ............................ CATGCGACGCCTTTTGTCTAACTTGACAACGAT 1877559 28 100.0 34 TGACAACGAT ............................ TCACGCGATTGCGGCGTTCGCGCTGATCAAAAAG 1877621 28 100.0 34 GATCAAAAAG ............................ CCATGTTATCATTTCAGAAACAAGAAAAGAATGA 1877683 28 100.0 34 AAAAGAATGA ............................ TGGGATAACCGTATAGGAAGCGTAGCAGTGCAGG 1877745 28 100.0 33 GCAGTGCAGG ............................ CCTTGATTGCCCGCGCCGTTATGGGCGGCGGGC 1877806 28 100.0 33 GGCGGCGGGC ............................ CAAGGAACAATTTGAAATTCTCACGCAAGGAAC 1877867 28 100.0 35 CGCAAGGAAC ............................ CACTACAATATCATAAAGCAAGGCGTCTCCGCATG 1877930 28 100.0 33 TCTCCGCATG ............................ CTCTTGGGGGATCGAGGGCCTTCAATTTGCCGG 1877991 28 100.0 35 AATTTGCCGG ............................ TCACGCGCTGGCGGCAAAGGCGTTAATTGAACGCT 1878054 28 100.0 33 ATTGAACGCT ............................ TAAAAAAGTGCTTGCTTTTTGGAAAAAATGAAT 1878115 28 100.0 33 AAAAATGAAT ............................ TGGTGTATAGCATCTAATCCAGTAATCTTTTTA 1878176 28 100.0 33 AATCTTTTTA ............................ TGTCAGGACATATCACTTAGAGCTTATGAGCGA 1878237 28 100.0 33 TTATGAGCGA ............................ CAAGTATATGGCTCACTTCCCGGATAATTACGG 1878298 28 100.0 34 ATAATTACGG ............................ CAAAAACCGGAGACCAACCATGAAACAGGAACAG 1878360 28 100.0 35 ACAGGAACAG ............................ CGCCTCGGGTCGCCGGGGCGTTGTCTTTGACCCGT 1878423 28 100.0 TTTGACCCGT ............................ CTTGTCCAGC ========== ====== ====== ====== ========== ============================ 18 28 33 GTCTTCCCCACGCCCGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-10.90] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [36.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [72,99] Score: 0/0.18 # # Final direction: R [0,0.64 Confidence: HIGH] >NC_002935 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2306022 29 100.0 32 NNNNNNNNNN ............................. ACGTCGGTGAGTAAAACTCCGAAAGTTACCGG 2306083 29 100.0 32 NNNNNNNNNN ............................. CCAAGGAAATGTTTCTTAAACTCCCCACCATC 2306144 29 100.0 32 NNNNNNNNNN ............................. AGGTGGTTACCGTGGCGAACCAGTGCGCTGGG 2306205 29 100.0 32 NNNNNNNNNN ............................. CCGCGGCCGATGTGACCGCAGCACGGGGCGAC 2306266 29 100.0 33 NNNNNNNNNN ............................. AGTTTCATATCCCTGAAATAAACTGTTCCAGTG 2306328 29 100.0 33 NNNNNNNNNN ............................. ATCGAAGTACCGGTCTGCCATGAGGTCGTTATA 2306390 29 100.0 32 NNNNNNNNNN ............................. ATTGGTGGATAATAGGCTAGGTGATTCTTGGT 2306451 29 100.0 32 NNNNNNNNNN ............................. ATTGGTGGATAATAGGCTAGGTGATTCTTGGT 2306512 29 100.0 32 NNNNNNNNNN ............................. GACGAAAAAGGAGGCGATCGCCGGTTCTATCG 2306573 29 100.0 32 NNNNNNNNNN ............................. CTACGGCTCCACAGGGCCAAAAGTTCGAGAAA 2306634 29 100.0 32 NNNNNNNNNN ............................. AGGCAAGCCGCTGGAGGAGCTTACTCGCCAAT 2306695 29 100.0 32 NNNNNNNNNN ............................. CTGTTTTGGTTGTGCAGTCCCCGAACATATCT 2306756 29 100.0 32 NNNNNNNNNN ............................. GATGACCGCGGCCTTGTGCAGGTCAAGATTAG 2306817 29 100.0 32 NNNNNNNNNN ............................. ATGGAAAGAAATCGCTGAACGCCGACTCCGCC 2306878 29 100.0 32 NNNNNNNNNN ............................. ATACTTAGGATGTCCCAAAGCTAAGGTAGCGG 2306939 29 100.0 32 NNNNNNNNNN ............................G CACGTAGGCTTGTCGGGCCGCATATGAATGGT 2307000 29 100.0 32 NNNNNNNNNN ............................. GTCTTCGAGGATTCGACGGGTTTCCATTGTGC 2307061 29 100.0 32 NNNNNNNNNN ............................. AATCTTGTGAGGGTCCTCGGATGACCGCGCAG 2307122 29 100.0 32 NNNNNNNNNN ............................. TTAAAGCACCATCCACGGGTGTTATTTGCTGA 2307183 29 100.0 32 NNNNNNNNNN ............................. AGCTCAGATTGCGGGGATTCTCCCCACATTTT 2307244 29 100.0 32 NNNNNNNNNN ............................T AAAGCGAGGTCGCTGCGCGTGACGCTGCCGAA 2307305 29 100.0 32 NNNNNNNNNN ............................. AATCTTGTGAGGGTCCTCGGATGACCGCGCAG 2307366 29 100.0 32 NNNNNNNNNN ............................. TTAAAGCACCATCCACGGGTGTTATTTGCTGA 2307427 29 100.0 32 NNNNNNNNNN ............................. AGCTCAGATTGCGGGGATTCTCCCCACATTTT 2307488 29 100.0 32 NNNNNNNNNN ............................T AAAGCGAGGTCGCTGCGCGTGACGCTGCCGAA 2307549 29 100.0 32 NNNNNNNNNN ............................. GCGAGCGACCGGCATGCCATCAGACCCGACCC 2307610 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 27 29 32 GTCTTCTCCGCACACGCGGAGGTATTTCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-10.50,-10.30] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [51.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [20,256] Score: 0.18/0.18 # # Final direction: F [0.68,0.55 Confidence: LOW] >NC_002935 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 39206 35 100.0 29 CGGCGTCCAC ................................... TGCGCGAGCGGCTTCCACGTACCATAGAA 39270 35 100.0 29 TACCATAGAA ................................... TATCGTCTAACAGTTGCTAAATTTTTTGC 39334 35 100.0 29 AATTTTTTGC ................................... TTCGGCGCGAGCCTCGCTAGGTGCTGCTG 39398 35 100.0 GGTGCTGCTG ................................... CCCGCGCCAGCGGAGATGAGCCGTAGGA ========== ====== ====== ====== ========== =================================== 4 35 29 GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.29%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.90,-0.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [45.0-43.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [130,1391] Score: 0.18/0.18 # # Final direction: F [0.37,0.18 Confidence: MEDIUM] >NC_002939 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 74806 37 100.0 36 GAAAAGAGCC ..................................... AACTTTGCCGGGGATTCTCTTTTCTGTGAATGGGCT 74879 37 100.0 35 TGAATGGGCT ..................................... TTTTATGCCAAATGTACGGACATTGCAAGTTAATC 74951 37 100.0 35 CAAGTTAATC ..................................... TTGATGTCATCGCCCACCTGAAGGTACAGGTCGCC 75023 37 100.0 36 ACAGGTCGCC ..................................... GCAAGGGCTGTGCCGTCCGTAACGTTGTCCGGTTTG 75096 37 100.0 38 GTCCGGTTTG ..................................... GCGATGGTCGGACGCTTGAGGACCAGGTTGTACGCCGC 75171 37 100.0 37 TGTACGCCGC ..................................... GTCTTCAAGCCCGCTGGTGATTTTGAGGGTAAATTCG 75245 37 100.0 38 GGTAAATTCG ..................................... TCGTAGCGCGTTTCCCGCGTCAGGCAGTACCCCATGAA 75320 37 100.0 36 ACCCCATGAA ..................................... CCGGTAACGGCCTTATTAACATCATCTGATGATTCT 75393 37 100.0 36 TGATGATTCT ..................................... CCAAATAGACTGAAGGCTGTTTATAAGTTCTGGATT 75466 37 100.0 37 GTTCTGGATT ..................................... GCGTGCTCAGGGAGGGACAAAGGGTCGAACATGTCAC 75540 37 100.0 35 AACATGTCAC ..................................... TAAACTTTTTGGGGGGCCAGCGGGGGGCTTGCCCC 75612 37 100.0 35 GGCTTGCCCC ..................................... AACCGCTCCAGGCCACCCTCCTGCCGGCACTGGGC 75684 37 100.0 36 GGCACTGGGC ..................................... TTGATCATTGAGAGGGTGATCCGCTCTCCGGAGAGT 75757 37 100.0 37 TCCGGAGAGT ..................................... TTGTATAACGGCTGCCGGATCAACAAGGGGAGTTTCG 75831 37 100.0 36 GGGAGTTTCG ..................................... TTGTCAAGCTCCCCCTTCCTGTCTGGTGGACAATAC 75904 37 100.0 37 TGGACAATAC ..................................... TGAATCTCAGTGAGTGTTTCAGCTCCCAACATCACAA 75978 37 100.0 36 AACATCACAA ..................................... ACGCTTGATCCAGTCCACCAACTGTTCTTCCACCCT 76051 37 100.0 37 CTTCCACCCT ..................................... TCCTTGCGGGCGCGCTCGGCGTTTCGTTCCTGTTCGG 76125 37 100.0 35 TCCTGTTCGG ..................................... CGTCTGACCAGTTCATATTGTTGACGGCCCAGTCC 76197 37 100.0 36 GGCCCAGTCC ..................................... TTGGATATTAATGGCAAAGGCTACAAACGCATCGCC 76270 37 100.0 37 ACGCATCGCC ..................................... GACGTCGACACCTGGCGCGCCGCCGGCATGGTGGCCG 76344 37 100.0 37 ATGGTGGCCG ..................................... CTATTGTAACCGGCGCTTGCGTAATCCAGGTGTATTG 76418 37 100.0 36 AGGTGTATTG ..................................... GTCTCGATAGCCGCCGTGTTTTCGCCGACGGTGGTC 76491 37 100.0 35 GACGGTGGTC ..................................... CTCTCTCAGGGCGCACAGGTAATCCTCCAGCGGCG 76563 37 100.0 37 TCCAGCGGCG ..................................... GTGGTGATGCTGGAAGTCGTGGGCACCTCCCCAGTCG 76637 37 100.0 37 TCCCCAGTCG ..................................... CACGTATACCGTCGCGCCCTTGTGCACGAAGTCGACC 76711 37 100.0 36 GAAGTCGACC ..................................... TTCATGACTTTGCGGTACTTCTCATAGGCTTCGGAT 76784 37 100.0 37 GGCTTCGGAT ..................................... TGCAACCCCTTCTCCTTCTCCTTCTCCTTATATAAAA 76858 37 100.0 36 TTATATAAAA ..................................... ACGGCAGACCGGCCCGAGACACTGACCCAGGAAGAA 76931 37 100.0 36 CCAGGAAGAA ..................................... TACCTCTACCGCGACAAGGAATATCACGGACATCTC 77004 37 100.0 35 CGGACATCTC ..................................... ATGTGTCCGCTGGTGAGCGTGACGCGATCCTCGCT 77076 37 100.0 36 GATCCTCGCT ..................................... GGCATAGTTGTAGGTGACTTGCACCAGAGCGACCGG 77149 37 100.0 37 GAGCGACCGG ..................................... TCGTACATCTGCACCACGGCGGCGTGCCGTTTTTCCT 77223 37 100.0 35 CGTTTTTCCT ..................................... ATCGCTGTGCATGCTGTCGAATTCGGCGTGGGTGA 77295 37 100.0 37 GCGTGGGTGA ..................................... GGGTAACGTCTCGGGCAGGTAGTTGTTTTCCAAGGGT 77369 37 100.0 35 TTCCAAGGGT ..................................... TTGCTCAACGAAGAAATATTCCGCCTCTGCCCGTT 77441 37 100.0 38 TCTGCCCGTT ..................................... GACGAGATGCGCCCATCCAGCAAGCGAGCCCCTCCCCC 77516 37 100.0 CCCCTCCCCC ..................................... TCGGCCGTCGATTTGCCCGAACTGGCATACCCCTCGAA ========== ====== ====== ====== ========== ===================================== 38 37 36 GTATTCCGGGGCCATGATGCCCCGGCCTCATTGAAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-15.50,-16.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [207,2] Score: 0.18/0.18 # # Final direction: R [0.45,0.74 Confidence: LOW] >NC_002939 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1521847 29 100.0 32 NNNNNNNNNN ............................. ATCGCCCTGGAGACCACCGCCCGTGACGGCGA 1521908 29 100.0 32 NNNNNNNNNN ............................. AGCCGGCGTTCAAACGCGACACTGGCGGCCGA 1521969 29 100.0 32 NNNNNNNNNN ............................. GCCTGTTCCCCCTCGTCGGCCAGGTTGTTGTG 1522030 29 100.0 32 NNNNNNNNNN ............................. TCGTCGAAGACATGGACCAGGCCGACGCCGTA 1522091 29 100.0 32 NNNNNNNNNN ............................. TGCTCTCCGGGCTCTCCGGTCTGGTGAATTTC 1522152 29 100.0 32 NNNNNNNNNN ............................. GTTTCCGGTCGCAGCATGGAGCCGATGATCGT 1522213 29 100.0 32 NNNNNNNNNN ............................. CTCACCCAATGACCTGGTACTGCCCGGTATAT 1522274 29 100.0 32 NNNNNNNNNN ............................. CTTCTGTCGCTCACGCTCAATGCGGTCCGTAC 1522335 29 100.0 32 NNNNNNNNNN ............................. CAACGGATCGACTACTGGGACTGCACTGTTTA 1522396 29 100.0 32 NNNNNNNNNN ............................. ATTACGCGCATGCCAGCTCCAACCATGCTCGA 1522457 29 100.0 33 NNNNNNNNNN ............................. GGGGTAAAGGGGGGCATGATGCCCCCCTCTGCT 1522519 29 100.0 32 NNNNNNNNNN ............................. GCCGTTACCGGTAACCCCGGTCGTTATGATGG 1522580 29 100.0 32 NNNNNNNNNN ............................. ACAGTAGCAACGATAGCGAGAGAAAGGAAAAT 1522641 29 100.0 32 NNNNNNNNNN ............................. GTGCTCTCGGTTCCGGTAAGACATACTATGCT 1522702 29 100.0 32 NNNNNNNNNN ............................. ATATTTTTGGTAATCAGCAGGGTTTTTAGTCG 1522763 29 100.0 32 NNNNNNNNNN ............................. ACGATACAGCAGACGATACAGGAGCAAGGACA 1522824 29 100.0 32 NNNNNNNNNN ............................. TACCAGGAATGTGTTTAGAACGCTCGAGAGCC 1522885 29 100.0 32 NNNNNNNNNN ............................. TTCAATGGGTTGATTTGATGGATTCCAAGCTT 1522946 29 100.0 32 NNNNNNNNNN ............................. TGCCGGGGGGGTGGCGCCGGCGGTGGTGTCTT 1523007 29 100.0 32 NNNNNNNNNN ............................. GTACCGGGCCGCTCCTCCATGACCAACGCCAA 1523068 29 100.0 32 NNNNNNNNNN ............................. GTCGGCAGCCGGCCCTGGGTGCTCTCCTCGGG 1523129 29 100.0 32 NNNNNNNNNN ............................. TAGACCTCTGCAGCGCCTTTGCCACTGCAGCA 1523190 29 100.0 32 NNNNNNNNNN ............................. TCGGCAGCGGTAAATCCGTCATGCGCCGCAAA 1523251 29 100.0 32 NNNNNNNNNN ............................. CCCCTTGTCGCTGCCGGACTTTTTCTTCAGGT 1523312 29 100.0 32 NNNNNNNNNN ............................. TCAGCCGGGCCGCCGACCCCAGCGCCCGGGAG 1523373 29 100.0 32 NNNNNNNNNN ............................. GCCCGGTCTGGCGGGCCGACCAGATCATCACC 1523434 29 100.0 32 NNNNNNNNNN ............................. AACCAGTCGGTGGCGTCGGTCTGGAAGGGGTT 1523495 29 100.0 32 NNNNNNNNNN ............................. TTCAACCCATATATGGGACTATGCGGCTAGGC 1523556 29 100.0 32 NNNNNNNNNN ............................. GAGGCGTAAGCATGGCAACAGAGACTCAGAAC 1523617 29 100.0 32 NNNNNNNNNN ............................. AGCTAGGCGACATCTCGTCTTTTGTCCGTGCC 1523678 29 100.0 32 NNNNNNNNNN ............................. CACGACTCACCGCCTGGCTGGCGGCCGACGAG 1523739 29 100.0 32 NNNNNNNNNN ............................. TATTCCCAGGTTAGCGGTTGCAGCCACAGCAT 1523800 29 100.0 32 NNNNNNNNNN ............................. CCATCAGCAACGCCGCAGACCGCGCCGGCATC 1523861 29 100.0 32 NNNNNNNNNN ............................. GCTGGTTCATGGGGCGTTCACCTCCGCAGGCC 1523922 29 100.0 32 NNNNNNNNNN ............................. AGGGCCGGGCCATGATCCAGGCCGACCTCGAC 1523983 29 100.0 32 NNNNNNNNNN ............................. GTTTTTCTGGAGGAGGTGCCCCCCTGGCATGC 1524044 29 100.0 32 NNNNNNNNNN ............................. GCTGTGTCTGCTGTGATAATCTTGAGAGTGAT 1524105 29 100.0 32 NNNNNNNNNN ............................. GGCGAGGTTAGGCGGAGGCTGGAGAGCATCGC 1524166 29 100.0 32 NNNNNNNNNN ............................. ACGAGCCACTGAAACTCAGCCCCTGGCCCAGA 1524227 29 100.0 32 NNNNNNNNNN ............................. GACCACGGCTACCTCAAGAGCGTGTTGAAATC 1524288 29 100.0 32 NNNNNNNNNN ............................. CTGCCCGCCTGGGGCTTGATCTCCAGCAGGCC 1524349 29 100.0 32 NNNNNNNNNN ............................. CTGCGGGAACAGCAGGCCGAACGCCTGGGCCA 1524410 29 100.0 32 NNNNNNNNNN ............................. ACCCCGGCAACCTGACGTGCGGCGTTTGGGTC 1524471 29 100.0 32 NNNNNNNNNN ............................. CTCGCCAGGGGGCAATCTTTGCTCCTGCCACG 1524532 29 100.0 32 NNNNNNNNNN ............................. ATGCAGATCCTCGTCGCCTACGATACCGCCGT 1524593 29 100.0 32 NNNNNNNNNN ............................. CTCGCGGTCGGAGCTGCCGGTGAGGCGGCGCC 1524654 29 100.0 32 NNNNNNNNNN ............................. TGCTCTGGCCCGACACGCCTCCTGAGCAGCGC 1524715 29 100.0 32 NNNNNNNNNN ............................. CCCTCCCCATCCCTGGTCGTAACCCGAAGATT 1524776 29 100.0 32 NNNNNNNNNN ............................. CCCAGCGGATCGTCAACGACGAGCGGCACCTC 1524837 29 100.0 32 NNNNNNNNNN ............................. GTGCGCGAGGGTATTTGCGGTCAAGGGCATCG 1524898 29 100.0 32 NNNNNNNNNN ............................. ACCACCGCCCCCATCACCTGGACCGGCGTCAA 1524959 29 100.0 32 NNNNNNNNNN ............................. AAATTAACCACACCGGACCGCTGTTTCTCAAC 1525020 29 100.0 32 NNNNNNNNNN ............................. ATCCTGTCGAGGCCCTGCAACTCCTGGGAGAG 1525081 29 100.0 32 NNNNNNNNNN ............................. GCGAATGCCGTTCGCCCGACCTACGGTCGGAC 1525142 29 100.0 32 NNNNNNNNNN ............................. GGGTCTGGTCCGGTGGATGTCTATCTGTGCAG 1525203 29 100.0 32 NNNNNNNNNN ............................. ATGCATTCGGGGAAAGCCCTTATCGTGACATT 1525264 29 100.0 32 NNNNNNNNNN ............................. CAGATGAAAGGAACCTGAAAATGGCACTCAGA 1525325 29 100.0 32 NNNNNNNNNN ............................. CGACACAGGATCGCGTCGCCAGTCTTGATCTC 1525386 29 100.0 32 NNNNNNNNNN ............................. GGGTATAACCCGCCTATAGACGCCGACTACGC 1525447 29 100.0 32 NNNNNNNNNN ............................. ATACACAAGAATGGCCGGATCGAGATGCCGAA 1525508 29 100.0 32 NNNNNNNNNN ............................. TCAATATTTTAGTTTTGCTGGTCAGGCGTTTC 1525569 29 100.0 32 NNNNNNNNNN ............................. CTCGTCAGCGCCATGCTCAAAGAGGCGGCCGG 1525630 29 100.0 32 NNNNNNNNNN ............................. CTGGATATCACCGAGGGGGGCGCCGTTGTCCT 1525691 29 100.0 32 NNNNNNNNNN ............................. TGTCCACCCCGTAATTTCCGAGACTTTTTTAG 1525752 29 100.0 32 NNNNNNNNNN ............................. AATGCACCGTCCGCAATTACCGCTTTAGCTAT 1525813 29 100.0 32 NNNNNNNNNN ............................. CCTTTGTAATAGTCGAAGCCGAACTCGACGCC 1525874 29 100.0 32 NNNNNNNNNN ............................. GGTGATGTACGCCCCACCATCAATTGAGACCT 1525935 29 100.0 32 NNNNNNNNNN ............................A GCCGAGCACGACGAAGAGAAACTCCGCAAGTG 1525996 29 100.0 32 NNNNNNNNNN ............................. ATATGGGGAACTAAGTGGAACGCCTGTGAGTC 1526057 29 100.0 32 NNNNNNNNNN ............................. CGGTATCAAATGAGGCCTTCCCCTCGTCAGGG 1526118 29 100.0 32 NNNNNNNNNN ............................. TATAATGAAGAAGGGAGAATTGAACAATGGGT 1526179 29 100.0 32 NNNNNNNNNN ............................. AATCGCTTTGAGGTTCGTTGCTGGAACGAGGA 1526240 29 100.0 32 NNNNNNNNNN ............................. ATGAGGGCTGAAAACCCGGCAATCGAACCCTG 1526301 29 100.0 32 NNNNNNNNNN ............................. GTCATTTCTGTTCTCCAGCCGCTATCGCCAGC 1526362 29 100.0 32 NNNNNNNNNN ............................. GCGGCCTGGAGGCGGTCGACTCCTTCACGGCC 1526423 29 100.0 32 NNNNNNNNNN ............................. ATGTGCGGCCCCTTCTCCTTCGGTGACTACTC 1526484 29 100.0 32 NNNNNNNNNN ............................. TTTATCGTTGCGAACCGACAGAGGGTGAAATA 1526545 29 100.0 32 NNNNNNNNNN ............................. GTGAGTATGCAGCAATGAACATTTCTCTCCTT 1526606 29 100.0 32 NNNNNNNNNN ............................C AGATGTGTGCTGAATTCAAGAACCCGCAAGGC 1526667 29 100.0 32 NNNNNNNNNN ............................. GACAAAATCAGCGACATTACCACCGTTGGCGA 1526728 29 100.0 32 NNNNNNNNNN ............................. GTATTCCCTATGGCCGGAAACACCATCATCGT 1526789 29 100.0 32 NNNNNNNNNN ............................. ATCGAGGATCTGCTCGTCGGTGATGGTGCCAT 1526850 29 100.0 32 NNNNNNNNNN ............................. TAACCATGCCCGGATCACTATCGAGTACACCG 1526911 29 100.0 32 NNNNNNNNNN ............................. CGCACGAATGTCCTCGGCCCTCCATGCCGTAC 1526972 29 100.0 32 NNNNNNNNNN ............................. CCGTTACGCCGACCGCCGAGTTTCGGCAAAAT 1527033 29 100.0 32 NNNNNNNNNN ............................. CACGGAAAAGAGCCCGACTCCGTGAACCAGGC 1527094 29 100.0 32 NNNNNNNNNN ............................. CAGGATGGCGTCGAAAAATACTATCGCCGGTC 1527155 29 100.0 32 NNNNNNNNNN ............................. GAGTACGACTGGGTACTCATCGACGAGGCGCA 1527216 29 100.0 32 NNNNNNNNNN ............................. AGCGGGTAGATGTCCTCCCGGTACTGGGATGC 1527277 29 100.0 33 NNNNNNNNNN ............................. GTGCCAAACAAGCCGTCAGTGCTTTTGGCGGGC 1527339 29 100.0 32 NNNNNNNNNN ............................. CTTGAGCGACCGCTTCAGAATCGGGATGAGCC 1527400 29 100.0 32 NNNNNNNNNN ............................. GCGTTGCCATCTGGGTCCTGATGCTCGACCGC 1527461 29 100.0 32 NNNNNNNNNN ............................. GTTTGCCGATACGTGCCGTCCCTGCGCCGACA 1527522 29 100.0 32 NNNNNNNNNN ............................. TACCCTCACTAAAGGGCAACAGCACGATTCAA 1527583 29 100.0 32 NNNNNNNNNN ............................. CGCTGGCTCACCCTGGCGCAGGGTCTCCGACA 1527644 29 100.0 32 NNNNNNNNNN ............................. ATGAGGGATGCTTCCGAAGGTAAGATTGAGGC 1527705 29 100.0 32 NNNNNNNNNN ............................. AGGTTGGGTGTGGCTTCCTACGATTTTGAGCA 1527766 29 100.0 32 NNNNNNNNNN ............................. ACTGTAACGTCTGCCATTGGCTCAGGAGGTTT 1527827 29 100.0 32 NNNNNNNNNN ............................. ATACCAAAACAAAAGACATTATGTCCGACATC 1527888 29 100.0 32 NNNNNNNNNN ............................. ATCAACTACACCTACACCGTGGCCGCCAGCGG 1527949 29 100.0 32 NNNNNNNNNN ............................. CTATCCGGTTCATTTTTTCATTGGTGAGATAG 1528010 29 100.0 32 NNNNNNNNNN ............................. GCTGCGAGGCTGCACAGACGAATCCTGGAAGG 1528071 29 100.0 32 NNNNNNNNNN ............................. GGGATCACCTGATGGACGCAACCCGCTACCTA 1528132 29 100.0 32 NNNNNNNNNN ............................. AGTGGCCCCACCGGCAGTATAGCCGGTTCCGC 1528193 29 100.0 32 NNNNNNNNNN ............................. GTGCTGGGACTCTTCGCGCAGGGCGCCCATAT 1528254 29 100.0 32 NNNNNNNNNN ............................. GAGCTTCGGCGGGTTTTGCGGATGCTGGTTTA 1528315 29 100.0 32 NNNNNNNNNN ............................. AAATTGCGACTATCCTCACCAAGTTGGCAAAG 1528376 29 100.0 32 NNNNNNNNNN ............................. ACGCTACTTTTTATCGCTGGGATCATTGCAAT 1528437 29 100.0 32 NNNNNNNNNN ............................. GTTGTCCAGAGGGTCAGCCATTTGGAGCTTGG 1528498 29 100.0 32 NNNNNNNNNN ............................. GAGTTGCAGCCCCTCACCGGACGGAGTCGCTA 1528559 29 100.0 32 NNNNNNNNNN ............................. GCTTCTTTGAAGCTGGGGACAATATCCCTGCT 1528620 29 100.0 32 NNNNNNNNNN ............................. ACCTCAAACAGAGCATCAACGCGGCCCACTCC 1528681 29 100.0 32 NNNNNNNNNN ............................. CCGGAGCCTGGGAGATCGGCAAGAACTACCTG 1528742 29 100.0 32 NNNNNNNNNN ............................. GGTAAACCCGTCCCCACAGTCACGATGGTGGT 1528803 29 100.0 32 NNNNNNNNNN ............................. GCGACAACTATGCTGGGGTCGTGTACTTGCCA 1528864 29 100.0 32 NNNNNNNNNN ............................. GTGTACTTACTTCCGTGTTGGTTCTCTCTGCG 1528925 29 100.0 32 NNNNNNNNNN ............................. CCGGTCTTGAGGGTCCAGCTTTCCTGCTCGAA 1528986 29 100.0 32 NNNNNNNNNN ............................. CAGTCGATACTCACCGATATCTCGTCAATAAC 1529047 29 100.0 32 NNNNNNNNNN ............................. GGAAACAGCACGATTCAACTGGTGTGTAACAC 1529108 29 100.0 32 NNNNNNNNNN ............................. AAGAAGGCCGGCTGCCATACATTCCGCCATAG 1529169 29 100.0 32 NNNNNNNNNN ............................. CTACGCAATGGCTCACTAATGTGGTCCATACG 1529230 29 100.0 32 NNNNNNNNNN ............................. ATGTTCAAAGCGTTGCGCCAGTGGTTAACGTC 1529291 29 100.0 32 NNNNNNNNNN ............................. CGGATGCCGAAGGGGGCAATTTGCTTACGGGT 1529352 29 100.0 32 NNNNNNNNNN ............................. CCAAAACCGCCAAGGACAACTACGAGGCGCAG 1529413 29 100.0 32 NNNNNNNNNN ............................. GTGGATATCAAGCGCCTGACCCTGGAAACTGC 1529474 29 100.0 32 NNNNNNNNNN ............................. CTGCGCAAACAGTTTGAGGGTCAGGTGGTGGA 1529535 29 100.0 32 NNNNNNNNNN ............................. TTGACGGAAGCGTTTCGGTATCGGAAGGCATT 1529596 29 100.0 32 NNNNNNNNNN ............................. GTGATTCCAGTGGCCCCAGCGGCAGTGCTGCC 1529657 29 100.0 32 NNNNNNNNNN ............CAT.............. GGTTTCTACGGCCAGTACCGGGGCGAAAAGAA 1529718 29 100.0 32 NNNNNNNNNN ............CAT.............. TTGTCACGCTTCGCGGCGCAGAACCGGAAACA 1529779 29 100.0 32 NNNNNNNNNN ............CAT.............. GAGCCAGAACCATGAATATATTAGACGGGGCA 1529840 29 100.0 32 NNNNNNNNNN ............CAT.............. GTGGGCTCCATGCTGCGACCGCGCACTAGAAC 1529901 29 100.0 32 NNNNNNNNNN ............CAT.............. CCTTTACATCGGTTTTCATGGCCTTGATAAAG 1529962 29 100.0 32 NNNNNNNNNN ............CAT.............. CACGTGCACTCGGTTGAGGATGTCGCCATAAG 1530023 29 100.0 32 NNNNNNNNNN ............CAT.............. ACGCCTATGACCACGCGGCGAAGATCATCGGT 1530084 29 100.0 33 NNNNNNNNNN ............CAT.............. CGGTAGACCTACTGGTGGACTCCGGGCTCTCCC 1530146 29 100.0 32 NNNNNNNNNN ............CAT.............. CCGCTCCAGTTCGGCAACGTGGACCAGATCCG 1530207 29 100.0 32 NNNNNNNNNN ............CAT.............. GTAGAATGGCTTTTCGGCGACGCGCTCCGAGA 1530268 29 100.0 32 NNNNNNNNNN ............CAT.............. TGGACGAGCGCAGTCAGGAGAAGTTGCTCGTC 1530329 29 100.0 32 NNNNNNNNNN ............CAT.............. CTCCAACGAATTGCCGCCATCGAGCGCCATCA 1530390 29 100.0 32 NNNNNNNNNN ............CAT.............. ACAATTCCGCCGGTGCGGTAGATGTGTTGGTA 1530451 29 100.0 32 NNNNNNNNNN ............CAT.............. TCCAGCATTGCCTTGCCGTGTCCGGATTTGCG 1530512 29 100.0 1 NNNNNNNNNN ...........C................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 143 29 32 GTGTTCCCCGCATGCGCGGGGATGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [65.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [76,2] Score: 0.18/0.18 # # Final direction: F [0.86,0.37 Confidence: MEDIUM] >NC_002945 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3075735 36 100.0 35 AGTCGTCGTA .................................... ACTTGCGCGCACAACGCATCCGCCATCCACGGGGC 3075806 36 100.0 37 TCCACGGGGC .................................... CTGAAAGGGGGACTGTGGACGAGTTCGCGCTCAAAAT 3075879 36 100.0 38 CGCTCAAAAT .................................... GCGAGAATAAGATTGTCAGGCTGGTGCTGCGTTTCCGT 3075953 36 100.0 43 GCGTTTCCGT .................................... TTCGGGAGCATGCCGCAGCTGCGGATGTGGTGCTGGATTTCGA 3076032 36 97.2 41 TGGATTTCGA ....A............................... ACGTTGGAAGCGTTTCGAGCGTACGGACTTTCCGGATGCAG 3076109 36 100.0 38 CCGGATGCAG .................................... TTGACTCAGACCCCAGCGCCAACTTGCCCACCATCCGC 3076183 36 100.0 38 CACCATCCGC .................................... AGGCGCTTCGACGGTGTGGGCGAGGTGACTTCGCAAAG 3076257 36 100.0 37 CTTCGCAAAG .................................... TGCGTCAAGTGCGGCACCGCCGTCATGTCGGTGTCGA 3076330 36 100.0 38 TCGGTGTCGA .................................... TTGAACACGCCGATACCTATTTGGTCGGGAGTGATAAA 3076404 36 100.0 35 GAGTGATAAA .................................... TGACAGGGTGCGGTGGTCGCTGATCGGCTCCCCGA 3076475 36 100.0 37 GGCTCCCCGA .................................... CGGACTTGATCGACGCGAACCTGTCTGACGCGAACCT 3076548 36 100.0 37 ACGCGAACCT .................................... GGCTGGAAAAGGGCGCGGGGCAACCGCATCGTCAAGA 3076621 36 100.0 36 ATCGTCAAGA .................................... GCGTTGTGGTCGTGTCGTGGAGCCTGTATTTCGCTG 3076693 36 100.0 36 TATTTCGCTG .................................... CATTAGTTGGTGTTGTGATCGCTAAACGCCGGGGCA 3076765 36 100.0 38 CGCCGGGGCA .................................... CTATCCGCGGGAAGAGATCACGAATCCGGCGTCGAAGG 3076839 36 100.0 38 GCGTCGAAGG .................................... ATGCTGAGCTGAGGCGCCGGATGATGGTGGTGCTGAAG 3076913 36 100.0 GGTGCTGAAG .................................... TGACAGGGTGCGGTGGTCGCTGATCGGCTCCCCGA ========== ====== ====== ====== ========== ==================================== 17 36 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [38.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [150,99] Score: 0/0.18 # # Final direction: R [0.27,1.15 Confidence: MEDIUM] >NC_002945 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3078342 36 100.0 40 NNNNNNNNNN CA.G...GGG.GGT..A................... TCGCGGCGAGCACGTCTCACCCAGCAGGCGGTGAGGTTGG 3078418 36 100.0 39 NNNNNNNNNN .................................... ACGGACGAGCTGGACCGCATCAGCGATGCTGAGCTGAGG 3078493 36 100.0 37 NNNNNNNNNN .................................... TTGTCTCAATCGTGCCGTCTGCGGTGACACGCTCCAA 3078566 36 100.0 40 NNNNNNNNNN .................................... TCGACGATTGGGACATCGACATCGACGCGATCGTCGACGA 3078642 36 100.0 41 NNNNNNNNNN ..........T......................... GTGATCTTCTCTCCTGGCGAGGTCAAGGAAATCGATGTGGA 3078719 36 100.0 36 NNNNNNNNNN .................................... CACCAGGATCAGCGCCAAGCCAGTTAGCGCAATCCA 3078791 36 100.0 36 NNNNNNNNNN .................................... CTCCCGGACCATCTGCAGCTCGCCCGGGTCCATGCG 3078863 36 100.0 37 NNNNNNNNNN .................................... CGGAGTCATCCGCGCGGGCCGGCGCGATTGTTGCCGG 3078936 36 100.0 25 NNNNNNNNNN ................................TCCG CGAAATTCACTGCGCGTTATTCAAG 3078997 36 100.0 41 NNNNNNNNNN .................................... CCGAGCCGACCATCCGCATCACACCGAAAGGGTTGGCGCAA 3079074 36 100.0 36 NNNNNNNNNN .................................... ACGTGGGGAGAGGGAATGGCAATGATGGTCGACGAA 3079146 36 100.0 39 NNNNNNNNNN .................................... TCAAAAACGGGGACGGCATGCTGCATGCCCTAACGTCGT 3079221 36 100.0 38 NNNNNNNNNN .................................... CAGCGCAGACGGCAGCCCCGAGTACTCGCTCTCCTCAG 3079295 36 100.0 38 NNNNNNNNNN .................................... CAGCGCAGACGGCAGCCCCGAGTACTCGCTCTCCTCAG 3079369 36 100.0 35 NNNNNNNNNN .................................... CTAAGCCCGCTAATCCCGCACAAGTGGTCAGAAAA 3079440 36 100.0 39 NNNNNNNNNN .................................... CTGATGATTGGTCGGCGTATGACGTGCTACTGAGGTGTT 3079515 36 100.0 38 NNNNNNNNNN .................................... ACCCCTGAGCCACGGCATGTGCACGGCTCCGTGTTCAA 3079589 36 100.0 39 NNNNNNNNNN .................................... TCGATGAATGATGCGCGCCAGCGGTAACGCGTGGGATGT 3079664 36 100.0 36 NNNNNNNNNN .................................... TCTGAAAATTCGTGGTCAACGAATTGTCGTCGAAAT 3079736 36 100.0 35 NNNNNNNNNN .................................... ACGGGCCGTGGGGCACTTACGGCGACGGCGCACAT 3079807 36 100.0 37 NNNNNNNNNN .................................... CCCCTAGCCACGCCTGCCGTGCCATGCCGCGCCGCGA 3079880 36 100.0 36 NNNNNNNNNN .................................... TTGGTCAAAAGCTGTCGCCCAAGCATGAGGCAAAAA 3079952 36 100.0 41 NNNNNNNNNN .................................... ACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTATG 3080029 36 100.0 38 NNNNNNNNNN .................................... GTGCAAGAATTCCGGGTTGCAGTGCAACACGGTTTTAA 3080103 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 25 36 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [36,50] Score: 0/0.18 # # Final direction: R [0,1.42 Confidence: HIGH] >NC_002976 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2517620 36 100.0 34 NNNNNNNNNN CACTCT.C...................C........ AGAGAATCAAGAAAAAATGTTCACGACCGTACTA 2517690 36 100.0 35 NNNNNNNNNN .................................... ATCGATGTAACGTATGCAAATGACAATTATTACTA 2517761 36 100.0 35 NNNNNNNNNN .................................... CTTTGTACTGATGATTTATATACTTCGGCATACGT 2517832 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 4 36 34 GTTCTCGTCCCCTTTTCTTCGGGGTGGGTATCGATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,14] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-7.00,-8.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [80.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [77,660] Score: 0.18/0.18 # # Final direction: R [0.27,1.83 Confidence: HIGH] >NC_002945 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3078418 36 100.0 39 GTGAGGTTGG .................................... ACGGACGAGCTGGACCGCATCAGCGATGCTGAGCTGAGG 3078493 36 100.0 37 TGAGCTGAGG .................................... TTGTCTCAATCGTGCCGTCTGCGGTGACACGCTCCAA 3078566 36 100.0 40 CACGCTCCAA .................................... TCGACGATTGGGACATCGACATCGACGCGATCGTCGACGA 3078642 36 97.2 41 TCGTCGACGA ..........T......................... GTGATCTTCTCTCCTGGCGAGGTCAAGGAAATCGATGTGGA 3078719 36 100.0 36 TCGATGTGGA .................................... CACCAGGATCAGCGCCAAGCCAGTTAGCGCAATCCA 3078791 36 100.0 36 GCGCAATCCA .................................... CTCCCGGACCATCTGCAGCTCGCCCGGGTCCATGCG 3078863 36 100.0 37 GGTCCATGCG .................................... CGGAGTCATCCGCGCGGGCCGGCGCGATTGTTGCCGG 3078936 36 88.9 29 TTGTTGCCGG ................................---- TCCGCGAAATTCACTGCGCGTTATTCAAG 3079001 36 100.0 41 GTTATTCAAG .................................... CCGAGCCGACCATCCGCATCACACCGAAAGGGTTGGCGCAA 3079078 36 100.0 36 GTTGGCGCAA .................................... ACGTGGGGAGAGGGAATGGCAATGATGGTCGACGAA 3079150 36 100.0 39 GGTCGACGAA .................................... TCAAAAACGGGGACGGCATGCTGCATGCCCTAACGTCGT 3079225 36 100.0 38 CTAACGTCGT .................................... CAGCGCAGACGGCAGCCCCGAGTACTCGCTCTCCTCAG 3079299 36 100.0 38 CTCTCCTCAG .................................... CAGCGCAGACGGCAGCCCCGAGTACTCGCTCTCCTCAG 3079373 36 100.0 35 CTCTCCTCAG .................................... CTAAGCCCGCTAATCCCGCACAAGTGGTCAGAAAA 3079444 36 100.0 39 GGTCAGAAAA .................................... CTGATGATTGGTCGGCGTATGACGTGCTACTGAGGTGTT 3079519 36 100.0 38 CTGAGGTGTT .................................... ACCCCTGAGCCACGGCATGTGCACGGCTCCGTGTTCAA 3079593 36 100.0 39 CCGTGTTCAA .................................... TCGATGAATGATGCGCGCCAGCGGTAACGCGTGGGATGT 3079668 36 100.0 36 CGTGGGATGT .................................... TCTGAAAATTCGTGGTCAACGAATTGTCGTCGAAAT 3079740 36 100.0 35 TCGTCGAAAT .................................... ACGGGCCGTGGGGCACTTACGGCGACGGCGCACAT 3079811 36 100.0 37 CGGCGCACAT .................................... CCCCTAGCCACGCCTGCCGTGCCATGCCGCGCCGCGA 3079884 36 100.0 36 CGCGCCGCGA .................................... TTGGTCAAAAGCTGTCGCCCAAGCATGAGGCAAAAA 3079956 36 100.0 41 GAGGCAAAAA .................................... ACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTATG 3080033 36 100.0 38 ACCCTCTATG .................................... GTGCAAGAATTCCGGGTTGCAGTGCAACACGGTTTTAA 3080107 36 100.0 ACGGTTTTAA .................................... TCTATGGACA ========== ====== ====== ====== ========== ==================================== 24 36 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [35.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [112,46] Score: 0.18/0.18 # # Final direction: R [0.18,1.42 Confidence: HIGH] >NC_002950 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2068360 37 100.0 34 GGTAATCAAT ..................................... AACGTATTACTAAAGCAGAAAAACAAGCATTTGT 2068431 37 97.3 34 AAGCATTTGT ................A.................... AAAATTAATTGAACTTATAAAATGTTCTTAATCT 2068502 37 100.0 36 TTCTTAATCT ..................................... AATTAGACTCTCCAATTGGATACCAAACTTATCAAA 2068575 37 100.0 34 ACTTATCAAA ..................................... TGCAGGGAGTTGGTTCAGCAAAAACCCCGCTGTC 2068646 37 100.0 38 CCCCGCTGTC ..................................... ATTGAGGAAGAAGGAGTAGAAAAGCCCTATACTCACAA 2068721 37 100.0 37 ATACTCACAA ..................................... TCAAAAATTGTAAAACTTATTAAGTCATGGCGAAACA 2068795 37 100.0 36 TGGCGAAACA ..................................... TCCGATAGAATGGGTACTTTACCTCATGGTCAGTGA 2068868 37 100.0 TGGTCAGTGA ..................................... TACTTGAGCGA ========== ====== ====== ====== ========== ===================================== 8 37 35 GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:59.46%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.50,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [341,402] Score: 0/0.18 # # Final direction: R [0.37,0.41 Confidence: LOW] >NC_002950 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2102527 30 96.7 36 AATGGATACA -............................. CTTCGATTGGCCCGTAAGGGAATTCGCAGCCAAAGC 2102593 30 100.0 35 CAGCCAAAGC .............................. GATCCGATTCGTCTGCGTCGTCGAGCATAAAGGCG 2102658 30 100.0 35 CATAAAGGCG .............................. AAAAACGACAGCGTGAAGTCGCCGGAGAGGCTGAT 2102723 30 100.0 35 AGAGGCTGAT .............................. AATAAAGCAGATTGGGAAAATCCTATATGTACTTT 2102788 30 100.0 37 TATGTACTTT .............................. TAGGTTAGTAAAATAGAGGTGTTCGCCGTAATATACT 2102855 30 100.0 37 GTAATATACT .............................. CTGCAAACTCGTACCTATCCACTGCAGGCTTGGCTTC 2102922 30 100.0 37 GCTTGGCTTC .............................. AGCTATAACCCTCGATGAGTACTACGAGGGAAATGGC 2102989 30 100.0 36 GGGAAATGGC .............................. GAAGTAGTTCTCGCTCGCTACCGAGAACGCTTCTTC 2103055 30 100.0 34 ACGCTTCTTC .............................. TTTTCAGTCGGTAGCGAAAACTACTTTTTATTTC 2103119 30 100.0 35 TTTTTATTTC .............................. AACGCATTTTATGTGCGCCAAGATAATTGGGGCAT 2103184 30 100.0 37 ATTGGGGCAT .............................. TTACGGCAAAAGGGTTTAGATACCTAATGGAAAAATC 2103251 30 100.0 35 TGGAAAAATC .............................. CATTTTTACAATGGATGCCGAAACCGACAGTCTAA 2103316 30 100.0 36 GACAGTCTAA .............................. AAGAAAGAAGAAAGAATAAGTAGAAATAAAGATGAT 2103382 30 100.0 37 TAAAGATGAT .............................. TAATGTTACACAATGGTATACTGATGATGGTAAACTT 2103449 30 100.0 37 TGGTAAACTT .............................. TTACGAATATCTAACGATGATACTATAGTGCAGTTTT 2103516 30 100.0 37 GTGCAGTTTT .............................. TAAATCAATCAGACAGTATCAAATGAAGTGCGGATAC 2103583 30 100.0 35 GTGCGGATAC .............................. CTATAAAAGAAATTCCAAGAGAGCATGATTCTGAG 2103648 30 100.0 35 TGATTCTGAG .............................. TTAGCAGACGAAGACGATTTTTTCAATGTAGTAAA 2103713 30 100.0 36 ATGTAGTAAA .............................. ACAAGATGGTAAAATGTTTGCTAATCTTAAAACTTT 2103779 30 100.0 36 TTAAAACTTT .............................. GATTCTCTATATGTTCAGTTCAATACAATGCTGAAA 2103845 30 100.0 36 AATGCTGAAA .............................. AGCGTATTTCGGTCTATCTCGTAGCGTTCGAAAAGC 2103911 30 100.0 35 TTCGAAAAGC .............................. ATGATAGAGGAGATAGGACTCGCGCTCACCGATAC 2103976 30 100.0 35 TCACCGATAC .............................. CTCCCGGGTTGGGCAGCACGGCTTTGAGGAATTGG 2104041 30 100.0 GAGGAATTGG .............................. CCGTTACAAA ========== ====== ====== ====== ========== ============================== 24 30 35 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.90,-0.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1516,247] Score: 0.18/0.18 # # Final direction: F [4.68,0.41 Confidence: HIGH] >NC_002950 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1243692 36 100.0 30 CGGAATAATA .................................... TCCTGCTCCTGAGGATGTGGAAGAAAAGGT 1243758 36 100.0 30 AAGAAAAGGT .................................... GCAATCACAAAAACTTATAACGATGCGTTT 1243824 36 100.0 30 CGATGCGTTT .................................... GACAACGCTACCGTTCAGGCTTGGGACAAC 1243890 36 100.0 30 TTGGGACAAC .................................... GCAATCACAAAAACTTATAACGATGCGTTT 1243956 36 100.0 30 CGATGCGTTT .................................... GACAACGCTACCGTTCAGGCTTGGGACAAC 1244022 36 100.0 30 TTGGGACAAC .................................... ATTACTAAAGAAATTACTAAAGATGTTGTA 1244088 36 100.0 30 AGATGTTGTA .................................... ATTTGTATCAGATTTGGCTCAAAAATGGGA 1244154 36 100.0 AAAAATGGGA .................................... CGACCCTTTAT ========== ====== ====== ====== ========== ==================================== 8 36 30 GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.50,-8.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [60.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [222,9] Score: 0.18/0.18 # # Final direction: R [0.18,0.64 Confidence: MEDIUM] >NC_002976 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2517690 37 97.3 34 GACCGTACTA ....................................A TCGATGTAACGTATGCAAATGACAATTATTACTA 2517761 37 100.0 34 ATTATTACTA ..................................... TTTGTACTGATGATTTATATACTTCGGCATACGT 2517832 37 100.0 CGGCATACGT ..................................... GATACTTTAA ========== ====== ====== ====== ========== ===================================== 3 37 34 GTTCTCGTCCCCTTTTCTTCGGGGTGGGTATCGATCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,14] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 97% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-7.00,-8.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [147,659] Score: 0.18/0.18 # # Final direction: R [0,2.1 Confidence: HIGH] >NC_002950 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 376221 36 100.0 30 CTTACCTCCA .................................... TATAAAGGTTTGTTCAAGGAATGTGCTACC 376287 36 100.0 30 ATGTGCTACC .................................... GATGCGGACAACGTCCCTGTACTCCGTCTT 376353 36 100.0 30 ACTCCGTCTT .................................... AGTCGATTAGCTCGTCCGCCGACACGTCTT 376419 36 100.0 GACACGTCTT .................................... ATGATTCTTG ========== ====== ====== ====== ========== ==================================== 4 36 30 GTTGGATCTACCCTCTATTCGAAGGGTACACACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.00,-10.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [475,818] Score: 0/0.18 # # Final direction: R [0,0.37 Confidence: MEDIUM] >NC_002951 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 1182189 19 100.0 37 NNNNNNNNNN ................... GAATTTCAAAAAGAAATTCTACAGACAATGCAAGTTG 1182245 19 100.0 37 NNNNNNNNNN ..GT...........C... AGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTT 1182301 19 100.0 37 NNNNNNNNNN ..................T GAAATTGGATTCCCAATTTCTACAGACAATGCAAGTT 1182357 19 100.0 1 NNNNNNNNNN ................... NNNNNNNNNN ========== ====== ====== ====== ========== =================== 4 19 37 GGCGGGGCCCCAACATAGA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,1] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [157,216] Score: 0/0.18 # # Final direction: F [0.64,0.41 Confidence: LOW] >NC_002951 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 2325056 23 100.0 33 NNNNNNNNNN ....................... CATTATTGTATGCTGACTTTTCGTCACCTTCTG 2325112 23 100.0 36 NNNNNNNNNN .............TTCC.CAA.T TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA 2325171 23 100.0 33 NNNNNNNNNN ....................... CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG 2325227 23 100.0 1 NNNNNNNNNN .....................T. NNNNNNNNNN ========== ====== ====== ====== ========== ======================= 4 23 34 TGTTGGGGCCCCGCCAACTTGCA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.90,-2.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [61,143] Score: 0.18/0.18 # # Final direction: R [0.37,0.96 Confidence: MEDIUM] >NC_002951 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 964023 30 100.0 26 NNNNNNNNNN .............................. CGGGGCCCCAACACAGAGGCTGGCGG 964079 30 100.0 28 NNNNNNNNNN .............................. GGTGGAGCCCCGACACAGAGAAATTAGC 964137 30 100.0 26 NNNNNNNNNN TCCTCA.TT.CTAC.G.CAA.......... CGGGGCCCCAACACAGAAGCTGGCGA 964193 30 100.0 53 NNNNNNNNNN .............................. GGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAA 964276 30 100.0 1 NNNNNNNNNN ....A....AGTAGGATAAT.T...T.... NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 5 30 33 AAAGTCAGCTTACAATAGTGTGCAAGTTGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.50,-1.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [152,71] Score: 0.18/0.18 # # Final direction: F [0.96,0.27 Confidence: MEDIUM] >NC_002967 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 367153 36 100.0 30 NNNNNNNNNN .................................... TATAGGAGGTTTCAAAATGGAAAAATCGAA 367219 36 100.0 30 NNNNNNNNNN .................................... TATCAAGTTGAGCCTTCTTTAAAGCTCCGC 367285 36 100.0 30 NNNNNNNNNN .................................... TATAGGAGTTCCAGACCCAGCACCATCACC 367351 36 100.0 30 NNNNNNNNNN .................................... AAAATCGAATGTATCGCAAGATTCAAACCA 367417 36 100.0 30 NNNNNNNNNN .................................... TACAAAATCGAAGCAGAAGAAAGGAACTTC 367483 36 100.0 30 NNNNNNNNNN .................................... GGTTCCAATCTTTTTGGAATGATTAACAAT 367549 36 100.0 30 NNNNNNNNNN .................................... GATTCTGTATTTCAACGCGATGTTGCTAAT 367615 36 100.0 30 NNNNNNNNNN .................................... CTAACAAAAGGTGGAATTTTACCGAACAAT 367681 36 100.0 29 NNNNNNNNNN .................................... AATTAGTTGTCATTGAAGGTGAAGCCGGA 367746 36 100.0 30 NNNNNNNNNN .................................... GCGGAAAAACTATATCGTAATCTTCATAGA 367812 36 100.0 30 NNNNNNNNNN .................................... GCTGGAACGCCTATAGCGACGCAAGCTCCT 367878 36 100.0 30 NNNNNNNNNN .................................... CGCTGGAACGCCTATAGCGACGCAAGCTCC 367944 36 100.0 30 NNNNNNNNNN .................................... GGTTCCAATCTTTTTGGAATGATTAACAAT 368010 36 100.0 30 NNNNNNNNNN .................................... CATCTAGAATCCTATAAGGCACGAAGTAAT 368076 36 100.0 30 NNNNNNNNNN .................................... CCTTTTTTGTAACTCCTATTTGCAGCTATG 368142 36 100.0 30 NNNNNNNNNN .................................... ATTACTTTTCGAAAAAAAGCCGTATTATAG 368208 36 100.0 30 NNNNNNNNNN .................................... TCTTTGTATTATAAAGTTAGCAGAGGAAAA 368274 36 100.0 30 NNNNNNNNNN .................................... GAATCTACCACCCTCAATACTCCGCCTATT 368340 36 100.0 30 NNNNNNNNNN .................................... GTCAACATCACCGCGATCACTACAAACAGC 368406 36 100.0 30 NNNNNNNNNN .................................... GAATGAAAAGGACAAGGAAAAAGCTGCCCT 368472 36 100.0 30 NNNNNNNNNN .................................... TGATTATTTGGAAGGCATGAGTAAATGCTG 368538 36 100.0 30 NNNNNNNNNN .................................... GCAGTAACTCACAAGCCACTTTGAGAGTTG 368604 36 100.0 30 NNNNNNNNNN .................................... TTCGACGCTTGTCGAAAAGGCAATCAAGGC 368670 36 100.0 30 NNNNNNNNNN .................................... CGAGAAGTTATTATTCTGAACTTCACATCG 368736 36 100.0 30 NNNNNNNNNN .................................... CTTTGGTATCAATTAGGATTTCCTAAAGTC 368802 36 100.0 30 NNNNNNNNNN .................................... TACAATGATTGCTTGTTGTTCTGATGGAAC 368868 36 100.0 30 NNNNNNNNNN .................................... TAGCCTCACCATTATAAAGCAATTCGCATG 368934 36 100.0 30 NNNNNNNNNN .................................... TGTTACGTCAAAAAATCCAATAAGTTGAAG 369000 36 100.0 30 NNNNNNNNNN .................................... CCTGATAAGGAAGATTGGCGAAAGAAGGTA 369066 36 100.0 30 NNNNNNNNNN .................................... TGCTACATCAAATAACCCTACAAGTTGAAG 369132 36 100.0 30 NNNNNNNNNN .................................... CCAAAAGTTCACAGTCATCCGAGTAGACGT 369198 36 100.0 30 NNNNNNNNNN .................................... CTATCTACTTTTGGGAACCCTAATTGGTAC 369264 36 100.0 30 NNNNNNNNNN .................................... TTTCTTCTGTTTGTCCATGTCCAAACCTCC 369330 36 100.0 30 NNNNNNNNNN .................................... AACAATGTGTGATTTTTCGGACTTAGTCCC 369396 36 100.0 30 NNNNNNNNNN .................................... AAGGGAATAACCTTACCATTCTGTCTTATG 369462 36 100.0 30 NNNNNNNNNN .................................... TTCCCAAAAGTTGATGCTGATACGATTGGT 369528 36 100.0 30 NNNNNNNNNN .................................... AACAATCAGCCGTGAGGGAATACGCCGCGT 369594 36 100.0 30 NNNNNNNNNN .................................... AGGTTAATGATGAAAAAAATAATAACTACT 369660 36 100.0 30 NNNNNNNNNN .................................... GGGCATATTATGCAGATATGCAACGAAACG 369726 36 100.0 30 NNNNNNNNNN .................................... CTTGGAAAAGAATTTATAAAATGCGAAGTT 369792 36 100.0 30 NNNNNNNNNN .................................... GAACATATGCTCGCTCTTTCTCGAGTACTC 369858 36 100.0 30 NNNNNNNNNN .................................... AAACTTTGAGGTACTAAATAAAACAAGTCA 369924 36 100.0 30 NNNNNNNNNN ...........................G........ ACCTTTCAATAGTAGCATCGGGCAAACCAG 369990 36 100.0 30 NNNNNNNNNN ...........................G........ GTCTCTAGTTACTTTACGTATAAACTCTAT 370056 36 100.0 30 NNNNNNNNNN ...........A...............G........ GGGCATATTATGCAGATATGCAACGAAACG 370122 36 100.0 30 NNNNNNNNNN .................................... CTTGGAAAAGAATTTATAAAATGCGAAGTT 370188 36 100.0 30 NNNNNNNNNN .................................... ATGCGATATATCTATGACTTTACCTATTCT 370254 36 100.0 30 NNNNNNNNNN .................................... AAACTTTGAGGTACTAAATAAAACAAGTCA 370320 36 100.0 30 NNNNNNNNNN .................................... ATATCTTTTGTCGTTAAAGTTAGTAAAAAA 370386 36 100.0 30 NNNNNNNNNN .................................... TTTGAAATTCCCCAAATGTCAATTGTTTTC 370452 36 100.0 30 NNNNNNNNNN .................................... GAAAATGCAGGCGGTTCCACTGGAGAGGTT 370518 36 100.0 30 NNNNNNNNNN .................................... TAATTCAAAAAAAGGTCTTGGTTTGAAAGG 370584 36 100.0 30 NNNNNNNNNN .................................... AGCCCGCCCTGCGGAATTGCACGGCCCGTT 370650 36 100.0 30 NNNNNNNNNN .................................... ATTGAGCGTCAAGCACCCGGTAAGCCCACC 370716 36 100.0 30 NNNNNNNNNN .................................... TTGGTTATTCGACTTTTGATTTGAGCTATC 370782 36 100.0 30 NNNNNNNNNN .................................... CTCGCTCGAGCACAACAGGTGGCTGTCCAC 370848 36 100.0 30 NNNNNNNNNN .................................... TTTCCAGCTAGAGCATCAAAGTTTATAGGG 370914 36 100.0 1 NNNNNNNNNN ..........................ACAAC...G. NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 58 36 29 GTTTGAGAGTTGTGTAATTTAAGATGGATCTCAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [96,132] Score: 0/0.18 # # Final direction: F [0.41,0.27 Confidence: LOW] >NC_002977 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 679953 37 100.0 34 NNNNNNNNNN T.CAACCCAG.G......................... CGTGAGGCCAAGCTGCATGGGTGAGCCGACCGAT 680024 37 100.0 37 NNNNNNNNNN ..................................... CGCAATGTCGTCCAACCATGGTTTAGCATGACCGTGT 680098 37 100.0 35 NNNNNNNNNN ..................................... ATGGCGGCGGTCATGCCTGGCGCGCCGCCGGCCTG 680170 37 100.0 34 NNNNNNNNNN ..................................... CAGATTAATTCCGCAAAAATAGCCAAAGCTAATA 680241 37 100.0 36 NNNNNNNNNN ..................................... AAGTTTTTTGCTAATAGTTTCAATTATGATCATCAT 680314 37 100.0 35 NNNNNNNNNN ..................................... GATCTGCGCGGCGCCAATCTTATCCATGCCAATTT 680386 37 100.0 36 NNNNNNNNNN ..................................... CACTAGCACGGTGTCATTTTGACCACCGATGGAGAC 680459 37 100.0 34 NNNNNNNNNN ..................................... AGAATACGATTCCAATGGTAATTTAATTTATTAT 680530 37 100.0 34 NNNNNNNNNN ..................................... CCTGAGACGGGCGCGCGAAGGCGGAACCTGCTGG 680601 37 100.0 37 NNNNNNNNNN ..................................... CCTTCATGGGCACGGGCATCCCGGTGTTCTGGTCGAT 680675 37 100.0 36 NNNNNNNNNN ..................................... CGCGTTGTCCACGGCCACCGCGGGGGATGGCGCATT 680748 37 100.0 34 NNNNNNNNNN ..................................... ACACGCTTTTGCAAAAGCGTACAATGGGTTCCCG 680819 37 100.0 34 NNNNNNNNNN ..................................... CGGGGGAGGTTCGGATCGCTCCGGTTCCAGCAGG 680890 37 100.0 34 NNNNNNNNNN ..................................... GACAGTGCCGCCCCTGCGCCAGCTCCAGATCGAG 680961 37 100.0 34 NNNNNNNNNN ..................................... CCATGGCTTCCGCCACCTTGGTCACTCCGCCGAA 681032 37 100.0 35 NNNNNNNNNN ..................................... AATGCGTGACGCATCATCTCGCCTGCGCCTGCCGG 681104 37 100.0 36 NNNNNNNNNN ..................................... TTGCCCACAATTACAACCATGGTTGACAGCCTCACT 681177 37 100.0 34 NNNNNNNNNN ..................................... CCTAGGCGGCGCCATATCACCCATTGCGGAAGTT 681248 37 100.0 39 NNNNNNNNNN ..................................... GTCCTTCGCGCGTCCGGCCGACACCGCCGCCTACGCCGC 681324 37 100.0 34 NNNNNNNNNN ..................................... ATTCGGCGCTGAAGCCGGTTTTCCTCTGGATCAT 681395 37 100.0 34 NNNNNNNNNN ..................................... GAGTCCAGGCGCTCGGCAATGGGCCGCCGGATGA 681466 37 100.0 34 NNNNNNNNNN ..................................... AGCCGCATTCGGCATCATCTAGCTCTTGTTTCTT 681537 37 100.0 36 NNNNNNNNNN ..................................... GATCCGCATGATCCGCATGCTCCGCGCACGACTCCT 681610 37 100.0 37 NNNNNNNNNN ..................................... GTTCCGCGCCCTGTCGATGTCCTCAGGGCTGACCAGG 681684 37 100.0 35 NNNNNNNNNN ..................................... CCTATCGCGCCTTCTACGGCAAAGCCCCCGACGAG 681756 37 100.0 33 NNNNNNNNNN ..................................... TTCAAGGTGTGGAACATAGTTTACCTCTCTAGT 681826 37 100.0 35 NNNNNNNNNN ..................................... CGTCAACGTGGCATCGGCGCTGCTCACCTTGGCGA 681898 37 100.0 35 NNNNNNNNNN ..................................... GACACGGTGATCCATACGGCACCCACGATGGCGAT 681970 37 100.0 34 NNNNNNNNNN ..................................... CCGCCACGCCTTACAGGGCCTTGCGGATATAGCG 682041 37 100.0 38 NNNNNNNNNN ..................................... GGCGTCACGTTCCGCGGCACAAGGGAGGGCGGCAAGGG 682116 37 100.0 34 NNNNNNNNNN ..................................... TCTTGCCCGCTCCGGATTCGCCGACCACGGCGAG 682187 37 100.0 35 NNNNNNNNNN ..................................... ACCCGCTGCAAAAGCTGCTCGCGAAATTGGAGCCT 682259 37 100.0 36 NNNNNNNNNN ..................................... CCGCCTTGATGGCCTCCTTGATGTCGGCGGAGGACG 682332 37 100.0 34 NNNNNNNNNN ..................................... CTTTTCTATGGGCGTAATCGTGACGGCATTTGCT 682403 37 100.0 36 NNNNNNNNNN ..................................... GGTATCCCCACCACCACCACCACCGCCGGCCCCAAA 682476 37 100.0 36 NNNNNNNNNN ..................................... GGCGATGTAATGGAATCGTTACTGAAAATGTTTGCG 682549 37 100.0 34 NNNNNNNNNN ..................................... ACGCGATGGGCGGTAGATACAGCAGGCCGGCAGC 682620 37 100.0 34 NNNNNNNNNN ..................................... CCATTTTCTTTTCCTCGATTGGTTGATTGATGTG 682691 37 100.0 34 NNNNNNNNNN ..................................... GCGAAAAATCGCCGGTGGGATACATCTACACGGT 682762 37 100.0 35 NNNNNNNNNN ..................................... GCAAAGACCGCGAAGGCTGACAAAATTCGAGAAAT 682834 37 100.0 34 NNNNNNNNNN ..................................... GTTTGGCAAGCCGAGAAAGAAACCATTCTGAAAG 682905 37 100.0 34 NNNNNNNNNN ..................................... TGAGGAGACTTGGACCGGTCGCGGGATTGCCCCT 682976 37 100.0 36 NNNNNNNNNN ..................................... AAACCTGAGCCAAATTGGAACCTGAGGTTTAAATAT 683049 37 100.0 36 NNNNNNNNNN ..................................... GCAAGATTATGATTAACGGCACCTTTGGTAAGACCG 683122 37 100.0 33 NNNNNNNNNN ..................................... GGTATTCACACACAAATCGTGCCCATATTCAGA 683192 37 100.0 33 NNNNNNNNNN ..................................... GGTATTCACACACAAATCGTGCCCATATTCAGA 683262 37 100.0 35 NNNNNNNNNN ..................................... GTGCCGCCGAGCACGACATAAAAGCTCGTGACCGT 683334 37 100.0 35 NNNNNNNNNN ..................................... GTGAGGAAAGGTCCTAACAAAGTTAGGGTAAGCGT 683406 37 100.0 35 NNNNNNNNNN ..................................... ATAGCGTCCATGCTTGAGCATCAAGAGCATGTTGC 683478 37 100.0 34 NNNNNNNNNN ..................................... TCGCGGCAAACGCACTCCAAATGAATGTGAATAT 683549 37 100.0 36 NNNNNNNNNN ..................................... GCGACATGCGTTCTGGACAAGCGTCATGCTAGACCC 683622 37 100.0 36 NNNNNNNNNN ..................................... GTCACGGATTGGCCGGGGCGCTTGGACTAACCCGAG 683695 37 100.0 37 NNNNNNNNNN ..................................... AGCAAGGCTCGCTCAATCTTGCAAGACATCATGTAGA 683769 37 100.0 35 NNNNNNNNNN ..................................... AAGGGCGGCGGTCATCGCGGGCCGCCGCGAATAGC 683841 37 100.0 35 NNNNNNNNNN ..................................... CATCGCAAAGCCCAGTTGATCGCCCATTATCTGAG 683913 37 100.0 35 NNNNNNNNNN ..................................... GTAGCTCTTAGTCCTCATCCGCGCCATCAGCTAGC 683985 37 100.0 34 NNNNNNNNNN ..................................... ATCCGTCCGCGCCATCAAGGCGCGACTGACAAGA 684056 37 100.0 35 NNNNNNNNNN ..................................... GCTACGCAGCCCCATCGTGACGATGATCAGCCCTT 684128 37 100.0 35 NNNNNNNNNN ..................................... AGCCATCCTCGACCATCTGGCAATAATAGCTTGCA 684200 37 100.0 36 NNNNNNNNNN ..................................... GTCGCTACCGTTTCCAGTTTCAGCATAGTGTTGGCA 684273 37 100.0 34 NNNNNNNNNN ..................................... CATCATCATCATTAGCGTCCTCCTCAGGTCAGTC 684344 37 100.0 35 NNNNNNNNNN ..................................... CCAATAATCATCGGGATGTCGTAATGATTGCCATT 684416 37 100.0 1 NNNNNNNNNN ..................................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 63 37 34 GTTTCAATCCACTCCCGGCTATTTAGCCGGGAGATAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [8,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-14.90,-15.10] Score: 0/0.37 # Array degeneracy analysis suggestion: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [50.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1052,182] Score: 0.18/0.18 # # Final direction: R [0.45,5.28 Confidence: HIGH] >NC_003106 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 25997 25 100.0 38 AAAAGTTCAG ......................... TGTTAGTCGGTCTATGAATTTCGTGGTAAACGCAAAAT 26060 25 100.0 39 AACGCAAAAT ......................... TATCATATTTCATCATTTTCTTTCACTAACAAATATATT 26124 25 100.0 40 CAAATATATT ......................... GGTGAGGTCAAAGAATTAGAGAGTTGGCAATTATATAGTA 26189 25 100.0 40 TTATATAGTA ......................... CAGCTGACGTAGCCTCTGAGTTAGCTTTCCAGAAATATCT 26254 25 100.0 41 AGAAATATCT ......................... TATAATAAAGCCCTGGGAAAGGACAGACCCGATATTTTTCG 26320 25 100.0 39 ATATTTTTCG ......................... AGGACATTTGAGTATCTATAATATTCCAGAGCCAAGAGT 26384 25 100.0 36 AGCCAAGAGT ......................... TTGCTCAGCCTCATCAAATTTCTTCCTTTTCAATAA 26445 25 100.0 38 TTTTCAATAA ......................... TCAATTGTTTTCTTCAATTGTTTTTCTTCAGACATTTA 26508 25 100.0 37 CAGACATTTA ......................... ACCAATTCGGCTGGAGACATACTGGTGCAGGAGGATT 26570 25 100.0 39 CAGGAGGATT ......................... AATCCCTGATTCAAGAACTATTGAGGAATTACTTCATAG 26634 25 100.0 37 TACTTCATAG ......................... GTAGTTGGTTCTTGAGTATCCTTACATATTCATCTAT 26696 25 100.0 38 ATTCATCTAT ......................... TTGGCGTAACAATATTTGCTACTAACTTAGGTATTAAT 26759 25 100.0 38 AGGTATTAAT ......................... GATTATCAATGACAATTCACAGACTTGCTAATTTCAAA 26822 25 100.0 43 TAATTTCAAA ......................... ATAGTTAATCCTCTTTGTAGCAAAACTACTTTTAAATTCATTT 26890 25 100.0 38 AAATTCATTT ......................... ACAATGGAACTTCTGAAACTCAACTCGTTGGATTAGTA 26953 25 100.0 40 TGGATTAGTA ......................... AAGAACGAAATACGTGAGAACGGTTTTAGTATATATGTAT 27018 25 100.0 38 ATATATGTAT ......................... TATCAAATGTATGCCTATAGACGAATAATGAGATTAGT 27081 25 100.0 36 TGAGATTAGT ......................... TTTGTTTAGGACTTCTTCTAGTTCTGATCCTCCAAA 27142 25 92.0 40 ATCCTCCAAA AA....................... CACAACTTAAATATAAATATGCATTAAATGAAATTTCTAA 27207 25 100.0 40 AAATTTCTAA ......................... AATGCGTCTGCAATAACTACGTTATCCCTCTTCTGTACCT 27272 25 100.0 39 TTCTGTACCT ......................... TCTTTTGAGTTTATTAATTCTTCTTTTAAGTTCTTTAAC 27336 25 100.0 39 GTTCTTTAAC ......................... CCATTGAAATGCAAAAAGGTATGATAAAGACTCAAGCTA 27400 25 100.0 39 ACTCAAGCTA ......................... AACAGTTCCCCAGTTCTCAGGCCCGTTTCAACTAATAAT 27464 25 100.0 38 AACTAATAAT ......................... CAGAGATATTATTTAACATATGTCGCTCCAGATCTTAA 27527 25 100.0 39 CAGATCTTAA ......................... TGCGACCACCAACGCGTTAGCCGTTTACAGACTGCCCTC 27591 25 100.0 40 GACTGCCCTC ......................... ACGACTACAACAAGATACTACAAAAGTTGACAGAGATATT 27656 25 100.0 39 CAGAGATATT ......................... TTGTCTCTATGATTTCATGAATCGCATCTCTTAGTTTTG 27720 25 100.0 39 CTTAGTTTTG ......................... ATAAATGGTTTTCAGTTCCCTTAACGTTCATTTTTTGTA 27784 25 100.0 43 ATTTTTTGTA ......................... CTGCTATTCTTGCTGAGAAACTCGATTTAGCGGATATAGCAAT 27852 25 100.0 38 ATATAGCAAT ......................... GAACCTCCCGAAACACTCAAAGTTAAGAAGACTAAACC 27915 25 100.0 39 AGACTAAACC ......................... TTATAAATGTTGTATTAATAACTAGCTGACCGTTATACC 27979 25 100.0 38 CCGTTATACC ......................... AACACCACAATGTTATGTCGCTATGGGAGAATATAAGG 28042 25 100.0 41 GAATATAAGG ......................... TTTGAGACATTAACACTCTGTACACCAGACAGAGTAACCTT 28108 25 100.0 34 GAGTAACCTT ......................... TGAATTTCTTCACTCCAGAAAAGATAAATACTAC 28167 25 100.0 42 TAAATACTAC ......................... GAGAAAAAATAAATCCTTTAAAACTGACCTCCTCCCTCCTTC 28234 25 100.0 34 TCCCTCCTTC ......................... ATAAGGAGCTTAAGGAGAGGATAGTAAAGGAGTA 28293 25 100.0 39 TAAAGGAGTA ......................... GTGGGCATGAACTTTCTACGCCACGCATTGAGGATATAA 28357 25 100.0 39 GAGGATATAA ......................... TGAAGCTGGTGCTTACGGCTACCTCTGTGAGCATGTAAA 28421 25 100.0 37 AGCATGTAAA ......................... TAGAAGATATAGAGCAAAATGTAAATAAAGAAGATTT 28483 25 100.0 35 AAGAAGATTT ......................... CTTACTCATCTTCCTTCACCTCCATGTCGAATGAT 28543 25 100.0 36 GTCGAATGAT ......................... ATATAACAGGGAAACCGAAGAAATTTGGAGTAGACT 28604 25 100.0 41 GGAGTAGACT ......................... TTCTGTTGATTTTTTCTTCTTCCATTTTGCGATCACCTTTC 28670 25 100.0 39 ATCACCTTTC ......................... AACAGTGGAAGGTTTACCTACAAGCTCTGCTTTACCACG 28734 25 100.0 39 CTTTACCACG ......................... ACCCAGATCCGCTTTACATAGAGGCTGTCGAAATAAACG 28798 25 100.0 40 GAAATAAACG ......................... ATTCTACTAATGGTGCAGGGAATATTGTGGAATTTGTATA 28863 25 100.0 41 AATTTGTATA ......................... ATCATTATGCCCACCTCAGTGGTGCAGTACTGCTAACGCGA 28929 25 100.0 38 GCTAACGCGA ......................... ATAGTACAAATTTTTAGAAGAACAAAAACCATAATTAG 28992 25 100.0 40 CCATAATTAG ......................... AGAGCATCTCTGGTATGTCCGGTGAGGTGATAGTGTTATG 29057 25 100.0 40 TAGTGTTATG ......................... AAGCGTCTACTTTTTAGTAGATTCTTATAAACTCATAAAA 29122 25 100.0 40 ACTCATAAAA ......................... ATGACATTGCGTCTGCGATGACTGAAGAGGAGTACAAAAA 29187 25 100.0 36 AGTACAAAAA ......................... GCGATGATGACGGATGGACAGGCTGACTTAAGATGA 29248 25 100.0 38 CTTAAGATGA ......................... ACGATTTTTGGCAATTAGTGGAAGAAAAGAAGCTAACA 29311 25 100.0 38 GAAGCTAACA ......................... GACTCCAGTTACATAAATTGCAAATAACATAATAATCC 29374 25 100.0 41 ATAATAATCC ......................... GTACACCTAATGGAAAATGTAATCATCATGGACTGAGGGCG 29440 25 100.0 33 ACTGAGGGCG ......................... CTGGACTACAGTCAGTCAAAATCTCTAATTCAA 29498 25 100.0 39 TCTAATTCAA ......................... GAAGTTGTTTCTTGATATTTTCAAATTCTACAATTGTAT 29562 25 100.0 39 ACAATTGTAT ......................... TGTGCCGATAATAAACCCTGCGTATCGAAGGGCTGTATC 29626 25 100.0 39 GGGCTGTATC ......................... GTTAACTTCTCAACTTGAGAAACTCTAAACTTTATAATC 29690 25 100.0 38 CTTTATAATC ......................... TATCTTAAGAGACTTTATGGAAATAAAGCCTTCAATAA 29753 25 100.0 44 CCTTCAATAA ......................... GAGGATTTTGTAAGAATAGATGAAATCAAAGCGGAATATAAAAT 29822 25 100.0 39 AATATAAAAT ......................... AGAAATTGAAAGTTTAGAAAGAAAAACATATATATCACT 29886 25 100.0 39 ATATATCACT ......................... CTCCAGTGGTTCTCATTTTGTGTGACGGTACTGAGTATA 29950 25 100.0 35 ACTGAGTATA ......................... TTTATTGAAGACTATGATGAAGTTATTGTAGATAA 30010 25 100.0 40 TTGTAGATAA ......................... GTGGTCCATATCCGCCTTCATAAGGTTTAGGTAAAGTTAT 30075 25 100.0 37 GTAAAGTTAT ......................... ATAATTGCGGGGCAATTGCACCGTACCATGATGAAGC 30137 25 100.0 40 ATGATGAAGC ......................... ACGGGAAAATAATACATAACGTGAAAGATGTTAATAAAAT 30202 25 100.0 39 TTAATAAAAT ......................... GAAGTAGAAATAACAGAAAACCTCCCGTATCCTATTAAT 30266 25 100.0 40 TCCTATTAAT ......................... GGAATACCATCAACAAGCAACTTCTTGCCCTCATATTTTT 30331 25 100.0 39 TCATATTTTT ......................... TTATTTGAAGGAATACAGTGTTTCTGACATGTCCTACAC 30395 25 100.0 39 TGTCCTACAC ......................... AAAGTAGAACACCCGGGCAGAGTAAGAAAATATTTAGAA 30459 25 100.0 37 ATATTTAGAA ......................... TTAAAATCGGGTCGGCAAATCCAGAAAGGAAACTGAA 30521 25 100.0 39 GGAAACTGAA ......................... AGAAGAAGAGGATAATACTTATACACCACATTATCTCAT 30585 25 100.0 ATTATCTCAT ......................... CGTTTTGTTT ========== ====== ====== ====== ========== ========================= 73 25 38 CTTTCAATTCCTTTTGGGATTCATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.00%AT] # Reference repeat match suggestion: R [matched GATTAATCCCAAAAGGAATTGAAAG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-4.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [63.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [867,541] Score: 0/0.18 # # Final direction: R [0.37,5.68 Confidence: HIGH] >NC_002977 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 971790 28 92.9 33 CCGCCGGGGT --.......................... CCGGTGAGGCGGAAGCCGCAGACGGTCCAGCCG 971851 28 100.0 33 GGTCCAGCCG ............................ GCGATCTGCTCAGCCATCGGGAAATCCGCGGCC 971912 28 100.0 33 ATCCGCGGCC ............................ AAAAATTCCTTACGCTTCAATCGCTTATCTCAC 971973 28 100.0 33 CTTATCTCAC ............................ GCAACTGCCGCATGAGCTGCGCGATGGTATCCG 972034 28 100.0 33 ATGGTATCCG ............................ AAGTTGCGGCCGGCCGATCGCATGCCATGACGA 972095 28 100.0 33 GCCATGACGA ............................ GCTCACCGAACGTCAACGGACTTTCTGCCAACA 972156 28 100.0 33 TCTGCCAACA ............................ GCTCGCGCCGAATATGAGCGTGCGCCAGGGCAG 972217 28 100.0 GCCAGGGCAG ............................ TCTATAGGCT ========== ====== ====== ====== ========== ============================ 8 28 33 GGTCTATCCCCGCGTGTGCGGGGGAGCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [109,60] Score: 0/0.18 # # Final direction: R [0,1.05 Confidence: HIGH] >NC_003106 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 2664299 24 100.0 40 ATGTTTAATT ........................ TCTCTTTCAAATCACTTCAGTGGGGCTAGGATATACTTAG 2664363 24 100.0 43 ATATACTTAG ........................ AAAATGAGCTTGAAAAAATCGAAAACGAACTCAGGTTAATGAG 2664430 24 100.0 40 GGTTAATGAG ........................ CCGAATTTACCTAGTGTTGTTAGCATAAGAAGAAGTAGGA 2664494 24 100.0 42 AGAAGTAGGA ........................ CCAAAGATAGGGACATGGGAGGCGCTAGCGAAGTATAAAGTT 2664560 24 100.0 41 GTATAAAGTT ........................ TGGACCAGATCGATAGCCGGGATTATAATAGATTTAATAAT 2664625 24 100.0 40 ATTTAATAAT ........................ TTTATTATCATAATAATACCAGACTTTTCGTACTCTTTCC 2664689 24 100.0 40 TACTCTTTCC ........................ ATTCAATATTTTGTATGGAGTTACAGCCCATACAACGTTT 2664753 24 100.0 41 TACAACGTTT ........................ AGAACTTCGCGGTAAGGCAAACATCAATTGCAGTTTCTAGT 2664818 24 100.0 42 AGTTTCTAGT ........................ GGGGTAGCAATGCTAATTTTGGGTACTGATGATTCGGGTAAA 2664884 24 100.0 43 TTCGGGTAAA ........................ CAAATGTTTTGGGTAATGATATACCACAGCTTGTAGCCTATTT 2664951 24 100.0 43 TAGCCTATTT ........................ AGGGTGTCGATATACCTAACATTCGTTCATTAGTGTTAGCGTC 2665018 24 100.0 43 TGTTAGCGTC ........................ ATTAATTACTATGGAATCCGTGATATCCGGATAAGGCAATCCG 2665085 24 100.0 40 AGGCAATCCG ........................ TTCGTTTCACGTCTTTCATAGTTAAAAATCAGTGTGAGAG 2665149 24 100.0 42 AGTGTGAGAG ........................ GTAAATGAATTGCCTGGTCTTCTCCACTCTGACAGTTGTAGT 2665215 24 100.0 41 CAGTTGTAGT ........................ ATAAGCATCCCGTTATTAGGACCTAACACTACTACAGTCGT 2665280 24 58.3 29 CTACAGTCGT ..............---------- TATTAATTTACCGTATCCGCTTTTGCAAA 2665333 24 100.0 38 CTTTTGCAAA ........................ CCAAAGCTGATGACTGTTAAACTCGAGTCTTCAGATCA 2665395 24 100.0 45 CTTCAGATCA ........................ AGGGCGGATTAGCAGTAAACGAAAGCGATTCAGTAGAATACGATA 2665464 24 100.0 41 GAATACGATA ........................ CTTTACAATAAGAAAATTTAACAAAGACCTGAGACAGTTTG 2665529 24 100.0 40 AGACAGTTTG ........................ AAAAATTAGAGAAGCTCGCAGAGGATGATGCTGAGACAAA 2665593 24 100.0 CTGAGACAAA ........................ ATGAGGTAGT ========== ====== ====== ====== ========== ======================== 21 24 40 CTTTCAATTCCATTAAGGATTATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.83%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.50,-2.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [474,741] Score: 0/0.18 # # Final direction: R [0.68,4.87 Confidence: HIGH] >NC_003106 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 2665648 24 100.0 42 GCTAATTTGT ........................ CAAGATGAAGTCGCATTAATTATAAGTTATCATGATAATGAC 2665714 24 100.0 40 TGATAATGAC ........................ AACTCATTAACTGAAAAGCCAATTGATCATCTATAACAGA 2665778 24 100.0 37 CTATAACAGA ........................ TAATATTAACAGTAATTTTTGAGTTATTAATGATATT 2665839 24 100.0 47 TAATGATATT ........................ AAAAATTCAATCGCTTGTTGGTCAGCTGAACCGTCATAATATTCCAA 2665910 24 100.0 43 AATATTCCAA ........................ CTACAAAACCATTACTTTGTAATGAGTGAGATAGAGCTCCAAA 2665977 24 100.0 40 GAGCTCCAAA ........................ CTACATGGATTGGAGCGCTAGATGCCGGCACACTAAAAGT 2666041 24 100.0 41 CACTAAAAGT ........................ ATGATTGGTGGTAAAGCTGGGGATATTTTGGCTGGTGCTGG 2666106 24 100.0 41 CTGGTGCTGG ........................ GTATTCGAAACTTAATTTGAATATCTTCCCCTTAGGGGTAG 2666171 24 100.0 42 TTAGGGGTAG ........................ TTTACACTAGTAAACTTAGTTACGTTAGTCTGGAAGTTCTGT 2666237 24 100.0 43 GAAGTTCTGT ........................ ATTTGCCCACTCTTCCAAATATGATATAGATATCTGTTTTAAT 2666304 24 100.0 38 CTGTTTTAAT ........................ CAGTTATATAGTAAAAGTTACGTCGAGTATGGAAAAAG 2666366 24 100.0 42 ATGGAAAAAG ........................ TCTTTATTGTGCATGACAGCCTAAATAAATATGCTCTGACTA 2666432 24 100.0 41 GCTCTGACTA ........................ CACAGCTAGAAAAGAACAGAGTTCAAGTAAAAATGAACAAA 2666497 24 100.0 44 AATGAACAAA ........................ AACTCAGAGTAATTACAGTTAAACTGGATGAAGAACTAGTCCAA 2666565 24 100.0 40 ACTAGTCCAA ........................ CTGAACTTGGTGTACCGTTAGACGTCATAGACTTTATCCA 2666629 24 100.0 39 ACTTTATCCA ........................ TTAAAATATTGCTTAAGCTCTTCCTCATCGTCAATAAAT 2666692 24 100.0 43 GTCAATAAAT ........................ CTACCCCTAGGGTGTCTTAAGTCAATTCTTTTCCTATTTTTTT 2666759 24 100.0 46 CTATTTTTTT ........................ TTCTAAGAGCTTAACCACAAACAAATTTGACATAAAATAAGATAAT 2666829 24 100.0 39 ATAAGATAAT ........................ TGGACTACAGTCAGTCAAAATCTCTAATTCAACATTTAA 2666892 24 100.0 39 CAACATTTAA ........................ TTCTGACCAGTCGACATGGAATTTTATAGTGAATAACAT 2666955 24 100.0 46 TGAATAACAT ........................ ATAGGAACTAAAGATCCCTGTTGATATTTTACTCCAGTAGTAGCAT 2667025 24 100.0 41 GTAGTAGCAT ........................ CTGCTTAACAAGTTAAGCAGCAATTGTAGAGTGTTATTCTT 2667090 24 100.0 39 TGTTATTCTT ........................ TTCTGCTTTGTCTCCTAATTTTTGTTTTATTGGCAATTC 2667153 24 100.0 TTGGCAATTC ........................ TGATTGTTTT ========== ====== ====== ====== ========== ======================== 24 24 41 CTTTCAATTCCATTAAGGATTATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.83%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.50,-2.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1823,230] Score: 0.18/0.18 # # Final direction: R [0.18,5.14 Confidence: HIGH] >NC_003116 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 608413 36 94.4 30 GCAACGGCTG ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 608479 36 100.0 30 CGGAAATTAA .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 608545 36 100.0 30 CGCTTTCTTT .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 608611 36 100.0 30 CGACCCGAAT .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 608677 36 100.0 30 AATCCAGTTA .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 608743 36 100.0 30 TGCAAATGCG .................................... ATGCCTTTTTTTGTACTGTTGTTTGAACGA 608809 36 100.0 30 GTTTGAACGA .................................... AAATTCGTTTCAGATAGCAAACGCAGTAGT 608875 36 100.0 30 ACGCAGTAGT .................................... GCCGGATATGACGGTGGGCAACTGGTACAG 608941 36 100.0 30 ACTGGTACAG .................................... GCCGGATATGACGGTGGGCAACTGGTACAG 609007 36 100.0 30 ACTGGTACAG .................................... ATTTCGCTTTTGTATTGATTCAAGGTGCTT 609073 36 100.0 30 CAAGGTGCTT .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 609139 36 100.0 30 ACTCGAGCAT .................................... GGGTAGCCAGTGCTAAAACCGCACCCGCTT 609205 36 100.0 30 GCACCCGCTT .................................... CCAAATAGAAATACATACGCCGAGTAATTA 609271 36 100.0 30 CGAGTAATTA .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 609337 36 100.0 30 GCCTTTTTTA .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 609403 36 100.0 30 GCCACAAAAC .................................... TTAAAATAATAACCCAATACACGATGTTAA 609469 36 100.0 ACGATGTTAA .................................... ACTTCGACGG ========== ====== ====== ====== ========== ==================================== 17 36 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-0.50,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1771,65] Score: 0.18/0.18 # # Final direction: R [0.68,1.05 Confidence: LOW] >NC_003106 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 2671319 24 100.0 40 ATGTTGTTTC ........................ TTACAGTAAAAGAGAAGTACTAACGTTGATGAGGAAACAT 2671383 24 100.0 41 GAGGAAACAT ........................ ACTTGTGATTGAATCTCGTATAATTTAAGCTTGGCATCATA 2671448 24 100.0 42 TGGCATCATA ........................ CTAGACTGAGTTAAATTGTACATGCCTAAAATATAATTAATA 2671514 24 100.0 39 ATAATTAATA ........................ CTCGATTTCATTAACAACTTTCCTGAGGAGGACGAGTTT 2671577 24 100.0 41 GGACGAGTTT ........................ AAAGTGCTTACGATTTATCTGGAACCCCTCTCGTCGGGTGT 2671642 24 100.0 43 CGTCGGGTGT ........................ AAAGCTGCAGAGAATAGCTAGGTTAGTCCAGGGTAAGCAAACA 2671709 24 100.0 42 TAAGCAAACA ........................ GTTACAACTATTACAATTTTTGGAATTTTCTTCTACAATTAA 2671775 24 100.0 43 CTACAATTAA ........................ TGGGTCGTGGAAGTAATCAGAGAGACTTACTGCGAATACTGTG 2671842 24 100.0 39 GAATACTGTG ........................ TAACTCATTTGTGTTTGTTAATAAGTTTTGACGTAGTCT 2671905 24 100.0 40 GACGTAGTCT ........................ GTACACTATCGTAGATTTTCCGTACTCATAATCAATTTCA 2671969 24 100.0 42 ATCAATTTCA ........................ ACGCAAGTGCCCACGATACCTGGGGCGATGGCGTTGATGCAA 2672035 24 100.0 41 GTTGATGCAA ........................ CATCTTGCATGCTGCATACGTTTCATAAAAATGAGGATCAA 2672100 24 100.0 41 TGAGGATCAA ........................ CCAGAGATTGAATTAGCTGAATTATATTCTTTTACATGTAC 2672165 24 100.0 45 TTACATGTAC ........................ CGTAGACGGGTGAACCGTAGTAAGAAGGACTATTAGTAGGTGCCC 2672234 24 100.0 43 GTAGGTGCCC ........................ TCTACGTTACGAATCAGAATTCACAATATGTAATGTATGTAAA 2672301 24 100.0 44 TGTATGTAAA ........................ ATAGAAGTTGATGAGACTTATGATGTTAACATTTGGTATCAAAA 2672369 24 100.0 41 GGTATCAAAA ........................ GTGAGAGCTTTTTAATAAGTACTAGCGTATTCTATTTACCC 2672434 24 100.0 36 CTATTTACCC ........................ GCAGGTAGTATTATGCAAGGTCCAATCAGGGTTATA 2672494 24 100.0 47 CAGGGTTATA ........................ TACCACTTGTATTGTTGTACTACTATTTAACCATAAAATTTCCATTA 2672565 24 100.0 38 ATTTCCATTA ........................ CAAACTTCTATTATTATGTTGTTTGGTCTTCAAGTGAC 2672627 24 100.0 42 TTCAAGTGAC ........................ ATTAATTGCTAATGTTAAAGGATCTTTCTCTTTAATTCTAAA 2672693 24 100.0 41 TAATTCTAAA ........................ ATAGAATAAAGATTGTTAGATTTCTAGTTTTCAACAATTGT 2672758 24 100.0 40 CAACAATTGT ........................ ATAAGAATAATAAGTTATTATGACTACTCAGAAGTCGTGA 2672822 24 100.0 42 GAAGTCGTGA ........................ ATTGAATAATTGTAGAATCTTAAAGCTTGTCAGTCTATAGAT 2672888 24 100.0 43 GTCTATAGAT ........................ GGAAGATGTTATCCTTTTTTTAAAAGTTTTAAGATTTAGTAGT 2672955 24 100.0 40 ATTTAGTAGT ........................ AAGAGGAGCGGGCTTAACGGTATTGTAATTGTTATAAAAA 2673019 24 100.0 47 GTTATAAAAA ........................ TAAGATAAAGTCTATTTTTTTATCAGAATTTCCAGATGCTAAATTTG 2673090 24 100.0 41 GCTAAATTTG ........................ ACATTAAGATATATTAATATTGCCAAACTTATGGAAAGTAA 2673155 24 100.0 40 TGGAAAGTAA ........................ ATTCTTCTAATTCTTCTAACATAGATATTAATAAACTCAA 2673219 24 100.0 45 ATAAACTCAA ........................ TCTGCTTATTTTGTAGAAAAACTCTACAGGGAGGGAAGAGCGTTA 2673288 24 100.0 38 AAGAGCGTTA ........................ GCGAATGCTTCTTCTAATTGGTATAGTGTTGTAATAAA 2673350 24 100.0 39 TTGTAATAAA ........................ GGGAGTCAGTAATTTTGCCTAAGCCATTGCACGTATAAG 2673413 24 100.0 38 CACGTATAAG ........................ ACGCTTAGACCAGATAGAAAAGAGACTCAAGAAGAAAA 2673475 24 100.0 39 AAGAAGAAAA ........................ ATATAATGATTGCGTCCAAGAAGTGGCATTAGATGATGT 2673538 24 100.0 40 TAGATGATGT ........................ TTGCAAATAGGGAAGATGCAGTAAAGTATTACATTACATT 2673602 24 100.0 41 ACATTACATT ........................ AAGATTAAAAAGTTTAGAAGTATACCTTAATTATTAGTTTT 2673667 24 100.0 37 TATTAGTTTT ........................ TCATCTGTGGAATTTGTAATTGAGGATAGCTAAAGTT 2673728 24 100.0 41 AGCTAAAGTT ........................ AATGAGTTATGAAGAAGTTTGTTCTTTTATAAAAGAAAAAG 2673793 24 100.0 41 AAAGAAAAAG ........................ TTCCTTTCTCTAGTCCTTGCCCTATCAAACACTGTTATAAC 2673858 24 100.0 41 CTGTTATAAC ........................ AATATGAGGATGAGGTATCTGAGGGTAGCGCTTACAAGGCT 2673923 24 100.0 38 TTACAAGGCT ........................ AATGTTTACGGTAATACTTATGAGTATACCAGTACTAC 2673985 24 100.0 45 CCAGTACTAC ........................ TTAATACTTATTATAGCTACAGTTATTATTGCCCTTATAGTTATA 2674054 24 100.0 41 TATAGTTATA ........................ TCTATTTTTCTAGATGGTGGAAACGGTAAGGCATAATAGAA 2674119 24 100.0 36 CATAATAGAA ........................ TACACTTAACGATATCCCAATTTACAAAATAATAAA 2674179 24 100.0 39 AAATAATAAA ........................ CACCCCTCAGCAGTACTTAGCAGCAGTCAGCTCTCTTAA 2674242 24 100.0 40 GCTCTCTTAA ........................ CTGGTGCACTAACGGGTGCTGTGGTAGGTTCATTTGTTCC 2674306 24 100.0 39 CATTTGTTCC ........................ TTGTTGTGTTCTCTCTCTTTGCGATCTCTTCTAGTTTCT 2674369 24 100.0 38 TCTAGTTTCT ........................ ATAATTATGATCCTTCACTAGACCAAAAGGAAGAAGAC 2674431 24 100.0 39 GGAAGAAGAC ........................ GACACGATAAATCATTCCGATATTAACAAAAAAATAGAT 2674494 24 100.0 41 AAAAATAGAT ........................ TATCGTTTTGAACTTTGCATGGACGGTATGTATAACTCTAA 2674559 24 100.0 43 ATAACTCTAA ........................ ATTTTTAACGTAATTTTGGCTCAGAAAGACGTGACAAAAATGG 2674626 24 100.0 41 ACAAAAATGG ........................ TGACTTATTAGAACAGCTAGTGTATGCTATAAATCCAAACA 2674691 24 100.0 40 AATCCAAACA ........................ ATTATCTCCACATGATATACGCCGTAGCGGGGCATATTGG 2674755 24 100.0 41 GGCATATTGG ........................ TAGAAACTTAGACGAAATAACAGAGAAATACGATATACAAC 2674820 24 100.0 40 GATATACAAC ........................ TGACATGAAAGCGACAAAACGCCAAATAGAATTAATAAAG 2674884 24 100.0 39 ATTAATAAAG ........................ CGATTATTTATATATGCTCTTTGTGCTGTCGGCAGTGAG 2674947 24 100.0 40 CGGCAGTGAG ........................ TCTGCCAGCTTACTCATCTTAGCCCACCTCCAACAACTTA 2675011 24 100.0 43 CAACAACTTA ........................ CTTCTGATTACGATAGACCTTTCCAGTTTATGTGTGTTACAAT 2675078 24 100.0 40 GTGTTACAAT ........................ ATAGTCAAGTGAGCCTCTGTTCCTTAAAGAAAATACAATG 2675142 24 100.0 42 AAATACAATG ........................ ACTTTATACGTATCCCCGCTTGTCGGCACCTTAACTGATTCT 2675208 24 100.0 41 AACTGATTCT ........................ AAAATAGCACCAGGAAGGAGACTATACCACCGGGTTATGAT 2675273 24 100.0 46 GGGTTATGAT ........................ GACCTCAGTTTAATGATATGACCTAGTTTTTACTTCCCAGTTAACT 2675343 24 100.0 43 CCAGTTAACT ........................ CTACTACTGATGATGGGAAAGCGTCAGAAGGATCTAAATTAAC 2675410 24 100.0 40 CTAAATTAAC ........................ AACTGCCCTGAGCGTGATGTTAAACTCCCCAGTTTAATAG 2675474 24 100.0 41 AGTTTAATAG ........................ CTGGTGAGGTTAGAATGCATGATGTAATACGTTTAGGAGAA 2675539 24 100.0 43 TTTAGGAGAA ........................ GAGACTGATTACTAGAAGAATTAAATAATTTTTGCATATCTTG 2675606 24 100.0 44 GCATATCTTG ........................ ATCTCATGTTGATATTCTTCTTTAGCCTTCTCTAGAGCCATTTC 2675674 24 100.0 36 GAGCCATTTC ........................ TTGCTCTGGTACTAGTACAACTCTCTTTTGCCATCT 2675734 24 100.0 41 TTTGCCATCT ........................ TACATATTTCTGCTGTAGCTGCCATTTATATCATCTTACTT 2675799 24 100.0 CATCTTACTT ........................ ACTATTACTC ========== ====== ====== ====== ========== ======================== 70 24 40 CTTTCAATTCCATTATGGATTAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-1.90,-2.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [582,3062] Score: 0.18/0.18 # # Final direction: R [0,4.68 Confidence: HIGH] >NC_003106 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 2675862 24 100.0 43 TTACAATCAA ........................ ATCGCGGGCTGCTGGGTCAAGTTCAGACATGTGATGAGCGTAA 2675929 24 100.0 40 ATGAGCGTAA ........................ TCTATTATAGAGAAGAGATAGTACTTTTGCTTCTGGAGTT 2675993 24 100.0 43 TTCTGGAGTT ........................ TAAAAATTTTCCAATTTGAGGATTTCTATCATACTAAATATAT 2676060 24 100.0 42 CTAAATATAT ........................ TTGGAGAACCACCCTGAGCTTTCCGAAATCGTTAACAATACG 2676126 24 100.0 38 TAACAATACG ........................ TTCTGCACTAGAAGAACCATGCTCTTTATCAGAATTGT 2676188 24 100.0 40 TCAGAATTGT ........................ AGCCAGCGAAGGATATGCAGTGATCGTTCATCATACTGAT 2676252 24 100.0 44 TCATACTGAT ........................ CCCTCGCTTAAACAGAAACTGTTAGAGCAAGGCATAATTACAGA 2676320 24 100.0 43 TAATTACAGA ........................ TTAAAGGCGGTGCACCGCTACCCCCGTTTGCGGTAATGTAAAA 2676387 24 100.0 41 TAATGTAAAA ........................ TGTTCATATTTCATATTTGCAATCTTCAAAATTTCCATAAA 2676452 24 100.0 42 TTTCCATAAA ........................ AGCACCGAGTATAGCACCTTCATTAGCTTCCTGAAGGACCTG 2676518 24 100.0 41 GAAGGACCTG ........................ ATAAACCAAAGAAGTGACATTTACGAATACTACTTTGAGTT 2676583 24 100.0 39 ACTTTGAGTT ........................ CCAAAACTAATGAGTATCATAATCGAGTCACCAGATCAT 2676646 24 100.0 39 ACCAGATCAT ........................ CACAGGTATCGCGAGGTCAGGGTTTGCTTTAACGAAATA 2676709 24 100.0 41 TAACGAAATA ........................ TCTGCATTGTGTTATGATAAATACGGTCAGCTTGCACGAGT 2676774 24 100.0 43 TTGCACGAGT ........................ AAAGTTGAAGTAAAGGTTGTTAAATCATTAGAAAAATTGCCTA 2676841 24 100.0 41 AAATTGCCTA ........................ CTCTATCCGGAAGAGTTTGCTAAGATTGACGAATTTTGTAG 2676906 24 100.0 40 AATTTTGTAG ........................ TGTTCAAGGAGAAAGCAATAATCAAGGTAAGACAAACTGT 2676970 24 100.0 46 GACAAACTGT ........................ TACAGTCCTGTCGACGTAACATTTCGCTTTGCGTAAGCAATACTGT 2677040 24 100.0 39 GCAATACTGT ........................ ATCGGTAACTCATCATAATAAGTAGCATAAACTACTCCA 2677103 24 95.8 41 AACTACTCCA .......................T ATAGTCGTTATCTATAGCGTCCTGAATCCTCTCTAAAGCGT 2677168 24 100.0 39 TCTAAAGCGT ........................ GAAATCCAAAGGAGAAAGGAGAAAAAAGCGGAAATTTTA 2677231 24 100.0 40 GGAAATTTTA ........................ AACCAGTTTGAGGAGTTCCTTAACAAGTTCATCTTCAGAG 2677295 24 100.0 43 ATCTTCAGAG ........................ CGTTCATTTTATTAGGGCAGTTGGGTATACACAAGAATTATCA 2677362 24 100.0 40 AGAATTATCA ........................ ACGGGGTATATTGTGATCTGGTTCTGACAAAGACGTTGAA 2677426 24 100.0 AGACGTTGAA ........................ ACAAGGAGGA ========== ====== ====== ====== ========== ======================== 25 24 41 CTTTCAATTCCATTATGGATTAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-1.90,-2.10] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [2249,1435] Score: 0/0.18 # # Final direction: R [0.68,4.5 Confidence: HIGH] >NC_003106 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 2677492 24 100.0 45 CATATAGTTA ........................ AGAGCTTGATTTAGAAGGAAAAATATGGTTGTATAATATAAAATG 2677561 24 100.0 42 ATATAAAATG ........................ AGATAGCATAATCATAATTTAGATCTTTAGCATATTTCATTA 2677627 24 100.0 41 TATTTCATTA ........................ AGGGAAAGGTTCAGGTTTAAGGCTTATATTTCACCGCTGAA 2677692 24 100.0 42 CACCGCTGAA ........................ TCAAATTGGGACACAAACCATAACCCCAACAATTGAAGATAA 2677758 24 100.0 45 TTGAAGATAA ........................ TTAAGTAGATATTCTGCCGCAAAATTCCTATGACAATAATGTTTT 2677827 24 100.0 41 ATAATGTTTT ........................ TAATTTTGAGGGCGAAAATCGTAGGGGATGAAAGATATACG 2677892 24 100.0 37 AAGATATACG ........................ TTAAAATATAAAGACGTATTAAAGCTAGACGGGAAGA 2677953 24 100.0 42 GACGGGAAGA ........................ TGCCAATAACTATGAAATCAAGATATTTGACAGATGGATAAA 2678019 24 100.0 GATGGATAAA ........................ TGCAGATTTTT ========== ====== ====== ====== ========== ======================== 9 24 41 CTTTCAATTCCATTATGGATTAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-1.90,-2.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [3879,842] Score: 0.18/0.18 # # Final direction: R [0.18,4.77 Confidence: HIGH] >NC_003106 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 2684986 24 100.0 43 NNNNNNNNNN ...C.....T...CG....A.... CTTACACTACTGCGACTTAGGCTAATGACGTTAATGCTCTAAG 2685053 24 100.0 40 NNNNNNNNNN ..............G......... GGGACAATATACTATTTACAAATGCCACTAGCATTGATTT 2685117 24 100.0 42 NNNNNNNNNN ........................ ATTTTCAATTACTAGTACAGCACATAGTGACGGAAATTATAC 2685183 24 100.0 37 NNNNNNNNNN ........................ GTAAAAATCCCGAGATAAAGCCTATCATTATCAAATT 2685244 24 100.0 42 NNNNNNNNNN ........................ GTTGAATATTAATGGTAATGAAAATGCTATGTATGCAGTAAG 2685310 24 100.0 39 NNNNNNNNNN ........................ TCCTTATCCTAGTGACAAGAATGCTCTTTATATAGTAAG 2685373 24 100.0 42 NNNNNNNNNN ........................ AACATGCTTATAGATTTGGTTGAACTTATATGGTAACTGCGA 2685439 24 100.0 42 NNNNNNNNNN ........................ TAGTGTTAGTTGTTATAGTACTCGTAGCAGATATTGTTGCTG 2685505 24 100.0 42 NNNNNNNNNN ........................ TGTTCCTTTGACTTCATCGATTAACAAACCGCTATGATCTAA 2685571 24 100.0 50 NNNNNNNNNN ........................ TAAAGAAAGAAAAGAAGTACAAGGATTTTGCAGTATTACCATTTAATAAT 2685645 24 100.0 39 NNNNNNNNNN T..CT......T.C.G.T.....A GGGAAGTACAAGGATTTTGCAGTATTACCATTTAATAAT 2685708 24 100.0 32 NNNNNNNNNN T..CT......T.C.G.T.....A GGGAAGTACAAGGATTTTGCAGTATTGGAAGA 2685764 24 100.0 47 NNNNNNNNNN ........................ TGAGGGTGGACTTCCCCGTGTTCGATTCGCCGTATAATATTAAATAT 2685835 24 100.0 40 NNNNNNNNNN ........................ AGTTAGTCCCCGATTCAAAAGTCGTTGAGGAGCTACTTCG 2685899 24 100.0 44 NNNNNNNNNN ........................ TCACCAAAAAGGATCCAACCACCATCATAATCCTCAGAATCTGT 2685967 24 100.0 40 NNNNNNNNNN ........................ CTTTAACACTTTTTTGTTTTATCATACACCTCACCCTATT 2686031 24 100.0 41 NNNNNNNNNN ........................ CGAATCTTTTATTCGTGTCAAAAACCGTGCCGTCTAGGTCA 2686096 24 100.0 42 NNNNNNNNNN ........................ TAAATATAGGAATATATCCTAACGTCTACGTTCCCCTCCGTA 2686162 24 100.0 40 NNNNNNNNNN ........................ ACGGGACTTTCTGGGCAACGACACGTTTTGGTTCAGAACG 2686226 24 100.0 38 NNNNNNNNNN ........................ TTGGGTATGTGTTGAAGTACAGATACGGGTTTGGGGTT 2686288 24 100.0 40 NNNNNNNNNN ........................ CAAATTTTCCATAAGAACTATTCAACATCAGTTTAGCTAA 2686352 24 100.0 41 NNNNNNNNNN ........................ AAAAATACGCTATCAAATTGCCTAAGCGTCTCAATTACATT 2686417 24 100.0 40 NNNNNNNNNN ........................ TTCTTAACGAAACTGAATCCAGGGGAACAGTTACGTTTAT 2686481 24 100.0 40 NNNNNNNNNN ........................ CGTTATATGAAGAATAAGTACTATGTTGCGACTGTAAAAC 2686545 24 100.0 40 NNNNNNNNNN ........................ TCCCTCTAGTCCACTCAAACGTCCATAATGCTGCAATTAA 2686609 24 100.0 40 NNNNNNNNNN ........................ CAGGAGGTTTAGGTAAGTTAGTTAAGTCAGTTAGTAGGTA 2686673 24 100.0 42 NNNNNNNNNN ........................ TAAAAAAGCTCTACGTAACTGAAAGGGGCTTAATAATTGCTA 2686739 24 100.0 41 NNNNNNNNNN ........................ CAATGAGTGCTACTGTGCCGTTTGTTGATGATATATCTAGT 2686804 24 100.0 43 NNNNNNNNNN ........................ AATCCCTTGGCGGGAATTTTGGAAACCTAGAAGATTCAAGAAT 2686871 24 100.0 42 NNNNNNNNNN ........................ AATATTTTTCTTATCTGGCAATACTTAAGAAATTGAGAATAT 2686937 24 100.0 40 NNNNNNNNNN .....................TCA CATCTGAAAACGTTTGCTGGTGTCAAAGGTCGTTCCGTCA 2687001 24 100.0 40 NNNNNNNNNN ........................ TCTATTGCGTGATCCACATAATCTCTAATCTCATATAGCA 2687065 24 100.0 42 NNNNNNNNNN ........................ TTTATTTTTCTAAGCGTTTAAAATTATTTCGTTATTTATAGA 2687131 24 100.0 41 NNNNNNNNNN ........................ ACAGGCGGAGGCTTTAGCTTTGGAGGCGGGAAAGGAGGAAG 2687196 24 100.0 40 NNNNNNNNNN ........................ AAAATGTAAAAGTATATGACATCTTTGTCACACCAGGTGA 2687260 24 100.0 39 NNNNNNNNNN ........................ TTTTTTTGAACTCATTATAAATAGAGACTGGTACCAAAA 2687323 24 100.0 40 NNNNNNNNNN ........................ TAGAAAGTTCTAGTTATGAAATAACAGAGGTGTTGAAAAA 2687387 24 100.0 39 NNNNNNNNNN ........................ TTACTCAACTAAAGAGAACGTGGATAAGGTAATAATAAA 2687450 24 100.0 40 NNNNNNNNNN ........................ TTAGGAGTGGGCTTTTAAATTTCTATCCTTCAATTTCTGA 2687514 24 100.0 41 NNNNNNNNNN ........................ CCGTATTGATTTGCTGTCTCCTCCTCCCTTCACCGATACCG 2687579 24 100.0 42 NNNNNNNNNN ........................ TTTGTAATGCGTATATCGTACATAGAGCAAAAATGGAGAAAC 2687645 24 100.0 41 NNNNNNNNNN ........................ TTAGCGTGATAGACGATATCTTAAGTGAGGCTAGGAAGTAC 2687710 24 100.0 41 NNNNNNNNNN ........................ TGTATACGGAAATATTGAAGTTACAAATGGCGTAACAAAAC 2687775 24 100.0 36 NNNNNNNNNN ........................ TTATACTCTTTGAAACACATGGCATGTGAAAAAATT 2687835 24 100.0 39 NNNNNNNNNN ........................ AGAAATATGAAGAACTGTTAAACGAGTATAACGGGTTAA 2687898 24 100.0 39 NNNNNNNNNN ........................ GGAATGTGGCACCACGCTGAGATTATCATCAACAATAAT 2687961 24 100.0 43 NNNNNNNNNN ........................ TGGGATATTACATAGTTCAATAATAAATTAAGGGAAAAACTAT 2688028 24 100.0 41 NNNNNNNNNN ........................ CGGTCTGGATTAACATTTAGTGGTTGTATGAAAATAAAAAA 2688093 24 100.0 43 NNNNNNNNNN ........................ TTTCTATCAAGTCAAGTACTGACAAATCAACTACAAATCTGAA 2688160 24 100.0 41 NNNNNNNNNN ........................ ATTATAGTAATTGTTTTAGTAATCATTTTGATAGCTGTGAT 2688225 24 100.0 40 NNNNNNNNNN ........................ CCTATAGGTGTTACAAAATTCAGCCCCTTCTGATGGGGAT 2688289 24 100.0 40 NNNNNNNNNN ........................ CTTGATCTACTACCAGTTCATTTATTCTCTCAATAAAGAA 2688353 24 100.0 41 NNNNNNNNNN ........................ AAATCGTTCTTCTACGTATACGACAGTTTGGGACTTCATAG 2688418 24 100.0 43 NNNNNNNNNN ........................ TATACTTCCTCCCCGTCAGAAGAAAATTTAGACGGGGGGATAG 2688485 24 100.0 43 NNNNNNNNNN ........................ AAAATCGTTGTAATAGACGAGGCACATAGAATACTCGCTAGAA 2688552 24 100.0 42 NNNNNNNNNN ........................ AGGAAGACTGGGGAAATATTGATTCTGCAGGGGAGGACAAAG 2688618 24 100.0 40 NNNNNNNNNN ........................ ATACCGTCACGTAGTAAACGTGGCTTAAAACATTACACTA 2688682 24 100.0 40 NNNNNNNNNN ........................ ATGTCAGTATTTTGAACTCTGTCCTTAAGGTAACTTTGTC 2688746 24 100.0 39 NNNNNNNNNN ........................ GGTTTCCTACTTTTACACCATCTTTATATAAAGATATAA 2688809 24 100.0 37 NNNNNNNNNN ........................ CACGACCTGGTCTTTTTACCGCATCACTCAGGCTTTT 2688870 24 100.0 40 NNNNNNNNNN ........................ TTAGAGAAGGAAAGAAAATCTATGTAGAATTAACAGAGAA 2688934 24 100.0 42 NNNNNNNNNN ........................ GGAACGTGGACATTAGGATATACAGTTACATCTATTTCTTTC 2689000 24 100.0 39 NNNNNNNNNN ........................ ACACGCAGATATTATGCTTCTTACAGACGTGGTCAAGAG 2689063 24 100.0 37 NNNNNNNNNN ........................ CTATCACTCAACGGAATATCGGAATATGAATCAAGAG 2689124 24 100.0 43 NNNNNNNNNN ........................ TGGGAATGTTTCGTAGACGTCGTAACGTCTGACAAAGTGAGAT 2689191 24 100.0 42 NNNNNNNNNN ........................ AACTTATGCAAATCTCATCTATGACGCGAGAAATAATATGTA 2689257 24 100.0 43 NNNNNNNNNN ........................ AGGAGTGGAAATATAGTTTTGACTCAGTGAGGGTAAATGTGTA 2689324 24 100.0 53 NNNNNNNNNN ........................ TGATTGTTTTTATATTCACTTGGTATAAAAGAATATTGTACAAATTTCTCAAT 2689401 24 100.0 37 NNNNNNNNNN ........................ TATCGCTGGAATAGTAGGAAATATTCTCTCACTTTAT 2689462 24 100.0 46 NNNNNNNNNN ........................ CAAAAAATTAGTTAGAAAAAACTGACTTAAGAAATAGTCTTATTAA 2689532 24 100.0 44 NNNNNNNNNN ........................ AGTGTTAGATAGACAGATCGGTAGTAAAGTGCCTGTCGTATTCG 2689600 24 100.0 45 NNNNNNNNNN ........................ TTATTGATGCTTTCGCCATTGAACCTATAGACGAAAAGAAGATCA 2689669 24 100.0 44 NNNNNNNNNN ........................ ATACATAATACATAATAATCAGAAAAAGGGCAAAAGAGCATGAT 2689737 24 100.0 42 NNNNNNNNNN ........................ TGGAGATAGTTGAGAGTTATGATTCTGATACTTATGCTTACC 2689803 24 100.0 40 NNNNNNNNNN ........................ GTAGCTGGATTTCTAGGGTACTATTTTGCACCAAGCAATA 2689867 24 100.0 40 NNNNNNNNNN ........................ TTTCTCTTCAGAAGAACAGAATTGAAGTGAAAGCGAAAAG 2689931 24 100.0 42 NNNNNNNNNN ........................ AAACATTTTCTGTAACAATTGTATAACAATTGGTTATAATGA 2689997 24 100.0 41 NNNNNNNNNN ........................ TTCAGCTTATCTGAGTACTTCAAGAAAATATCGTTAAGCCT 2690062 24 100.0 45 NNNNNNNNNN ........................ TGAATATAAAATCCAATATCTTAAAGTTGTAGTTATAAATCATGT 2690131 24 100.0 42 NNNNNNNNNN ........................ TGAAAAACTGAAAAATGACGGTTGGGAAGTAATTTGGACTAT 2690197 24 100.0 40 NNNNNNNNNN ........................ AAGGAATTCTGCAGAAATTTAGACGAACTTAATCAAGTAT 2690261 24 100.0 40 NNNNNNNNNN ........................ CTATCTTCTCTAAAGGACCCACGTAAAGATACCTTAACTT 2690325 24 100.0 37 NNNNNNNNNN ........................ TGGAAAAAAGTCTTATAATAATCATCTTTATAGTAGT 2690386 24 100.0 41 NNNNNNNNNN ........................ CTGTTCATAAAAGAAGTAGTGATGGCAAGAAATCCTATACT 2690451 24 100.0 42 NNNNNNNNNN ........................ AACGGGTTAAGCCCAACAATGTTCATAACACCAGCAAATGTA 2690517 24 100.0 41 NNNNNNNNNN ........................ ATCCAGGCTTATATGCGAGGTGGCATTTAGAGGGGTTAAAA 2690582 24 100.0 40 NNNNNNNNNN ........................ TCGCTGTAATAGGTGCTAGGATACTTACTAGACAACTTGG 2690646 24 100.0 39 NNNNNNNNNN ........................ TAAATGCTCAAATACTTAATCTCTCAGCGTGGCCTAAAT 2690709 24 100.0 39 NNNNNNNNNN ........................ ACAACCAAAATGATCTATTTACCAATGTGATACTCATAA 2690772 24 100.0 44 NNNNNNNNNN ........................ TAATTATCATCAGAGAAAATTAGCAGAAATGAATGAGAGAAACG 2690840 24 100.0 42 NNNNNNNNNN ........................ TGTTCCCTTGACTTCATCAATTAACAAACCGCTATGGTCAAG 2690906 24 100.0 41 NNNNNNNNNN ........................ TCAAACACGTCACCCTCAAGGTATGCTGGTGATTGTAATGA 2690971 24 100.0 45 NNNNNNNNNN ........................ GAGCGGGTACACTAAGAGGGAAATAATAGCAGTATTGAGAAAGCA 2691040 24 100.0 43 NNNNNNNNNN ........................ TTAGGTACAGTGTCTCAATTGATAATCCCGCTTATTTTAGACT 2691107 24 100.0 40 NNNNNNNNNN ........................ ATCTGACAAAAAAAGAGAGATATTCTATGATATTTGTTGT 2691171 24 100.0 38 NNNNNNNNNN ........................ TCTATTTTATCGTTTGTCAAAACTTCATCGAGTGATAT 2691233 24 100.0 39 NNNNNNNNNN ........................ ATATCTAATGTGTTGCTTTAGTGATACTGACGACGAAAA 2691296 24 100.0 42 NNNNNNNNNN ........................ TCTATACCCGGAAGAGTTTGCTAAGATTGACGAATTTTGCAG 2691362 24 100.0 39 NNNNNNNNNN ........................ GTATATCAGAAAGTTCTTTGCGACACAAATGCTAAGTTT 2691425 24 100.0 41 NNNNNNNNNN ........................ TTAATTCCATTTAAGCAACAAATTCAAACGTTTCTAGAGTC 2691490 24 100.0 40 NNNNNNNNNN ........................ GTTTAATTTTTTCTGACTGGAGACCGTCTAAGGATTATGT 2691554 24 100.0 39 NNNNNNNNNN ........................ AATAGCCTAATGAGGTGAGGGATATGAAGAAAAGGAGTT 2691617 24 100.0 44 NNNNNNNNNN ........................ TCGAGAGGTCTGTCGTCATAAGACGGGCACTCTCGGAATTCTTG 2691685 24 100.0 38 NNNNNNNNNN ........................ TCGTTAATATTTCAGCAGTTTCCGGGACAGTGTATTTG 2691747 24 100.0 43 NNNNNNNNNN ........................ TGAAAGAGCTGAAGGACTTAGATAGTTTAGTAAATATTGTTAA 2691814 24 100.0 39 NNNNNNNNNN ........................ ACGATCTCGTCATAGATTCCTCCACGTAATAATAAAAAG 2691877 24 100.0 41 NNNNNNNNNN ........................ CTGACCAGATGACACTTTCATTACCATCATCAAGAGCTGTT 2691942 24 100.0 42 NNNNNNNNNN ........................ CGCAAAACCGTAATAGATTTCGAACTTCCTCTTCTGCCCTTT 2692008 24 100.0 40 NNNNNNNNNN ........................ GAAATAGCTAAGTACTTTGATAGTTTCCCCTTCTTGCTCA 2692072 24 100.0 42 NNNNNNNNNN ........................ TGATAGGGCTTTACCTCAGCCATGATAAGTTACCTTATTTTT 2692138 24 100.0 41 NNNNNNNNNN ........................ GGTGGAGGAATATCTGGAAGCACTCTATTCTGGGTTGCAGT 2692203 24 100.0 41 NNNNNNNNNN ........................ CCGGTTCTAGCAAACCCTCTACCGCTAACGTTTCCAAGAAA 2692268 24 100.0 39 NNNNNNNNNN ........................ ATAACACAGTTGTTGAGGAGTGCTGCTGAATTGGAAAGC 2692331 24 100.0 43 NNNNNNNNNN ........................ CAGAGGTAGGAAGTAAAAAAAAGATATTCAAAATTACAGAAAA 2692398 24 100.0 41 NNNNNNNNNN ........................ CCCAGCGAAAAGCCTAGACACTCCTCGAACTGCTCTACCAA 2692463 24 100.0 38 NNNNNNNNNN ........................ TCAGCCTCCTCAGGTTTTATAACAATTTTGGTTGGCCC 2692525 24 100.0 39 NNNNNNNNNN ........................ TTATGTCAGTAGTCTTGACATTAAAATTAAGATGTATGA 2692588 24 100.0 40 NNNNNNNNNN ........................ CACCAGTTCCGGAGCTAGTTGACGTTTGACCGCCAGTTCC 2692652 24 100.0 40 NNNNNNNNNN ........................ CTTTCTTGAGGTAGACAAACTCTGAAATATTTTTAAACTT 2692716 24 100.0 38 NNNNNNNNNN ........................ CTACAGAAAGCTAAGATGATAAGGGCCTACCTTATTGT 2692778 24 100.0 44 NNNNNNNNNN ........................ AATATCATATTAGGGGATTTTCCCTAACTCCTCTCGTAAAAGTT 2692846 24 100.0 1 NNNNNNNNNN ........................ NNNNNNNNNN ========== ====== ====== ====== ========== ======================== 122 24 40 CTTTCAATTCCATTAAGGATTATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.83%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.50,-2.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [66.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [32,1889] Score: 0.18/0.18 # # Final direction: R [0,5.73 Confidence: HIGH] >NC_003197 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 3076672 30 96.7 31 GAACGCCCCT .............................G CGAAATAGTGGGGAAAAACCCCTGGTTAACC 3076733 30 96.7 31 CTGGTTAACC .......................A...... AGGCCTTGATACCATCGCTCGCACCTCGTCA 3076794 30 100.0 31 CACCTCGTCA .............................. CTTTTGATTTTGCTGCGATGTTATAACCAGA 3076855 30 100.0 TATAACCAGA .............................. ATCCACATAT ========== ====== ====== ====== ========== ============================== 4 30 31 CGGTTTATCCCCGCTGGCGCGGGGAACACT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,6] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-14.20,-14.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [77,1361] Score: 0.18/0.18 # # Final direction: R [0,2.1 Confidence: HIGH] >NC_003143 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1773655 28 100.0 32 ATTATCTTAC ............................ ATGTTCGACGATTTATTTTATTTGTATTTCAG 1773715 28 100.0 32 TGTATTTCAG ............................ ATTTATTAAAGATGCTGACAAAAAGAACTTAA 1773775 28 100.0 AAGAACTTAA ............................ GTCAACGCTTCACTCCCTGCGCGGGGTATAAC ========== ====== ====== ====== ========== ============================ 3 28 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [496,96] Score: 0.18/0.18 # # Final direction: F [1.69,0 Confidence: HIGH] >NC_003197 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3076978 28 100.0 28 GAAACGGCTC ............................ GATCGAGTAACGTGCGCTGGAACGCGTC 3077034 28 50.0 33 GGAACGCGTC --------------.............. AATTAAAGCCGAGGGTGGCACCGCGCCTTATTC 3077095 28 100.0 34 CGCCTTATTC ............................ GCACCTCGAAACGGTTTTAAAACACTACCGTTTC 3077157 28 100.0 33 CTACCGTTTC ............................ TGGACCGATGGGGCCAACATCGCCGAACGTGGC 3077218 28 100.0 33 CGAACGTGGC ............................ GTTACGTTCGGTAAATGGAAAGCGGCGAATATC 3077279 28 100.0 33 GGCGAATATC ............................ CCAGAAAGTGCCGGTAGTGCCTGATGAACGACC 3077340 28 100.0 33 ATGAACGACC ............................ CGCGCCCACTTCCGTAAAATACAGATAATCCAC 3077401 28 100.0 33 GATAATCCAC ............................ GGTAATTTCTCATCTAACAGCCTGTACGCCTCA 3077462 28 100.0 33 GTACGCCTCA ............................ GAATCTAATGCAACAGATGAATAAACACGTAAC 3077523 28 100.0 33 AACACGTAAC ............................ TCTTTATCGTCAATGCGAAATTTTCCGCGACGC 3077584 28 100.0 33 TCCGCGACGC ............................ TCCCATTCACCAACAACAATATCGCCCTGCAAC 3077645 28 100.0 33 GCCCTGCAAC ............................ CGTTGCGTCAGGTTGATCCAGTGCGTCAGCGGC 3077706 28 100.0 33 CGTCAGCGGC ............................ TCTCGGTCTCGGTCTCGGTCTCGGTAGTGACGC 3077767 28 100.0 33 GTAGTGACGC ............................ ACTTCCTTCAGTCTTAACGATAATCCGCAACGC 3077828 28 100.0 34 TCCGCAACGC ............................ GCAAAATAGCGATGAGCTGGCTACGCCCACTGGC 3077890 28 100.0 33 GCCCACTGGC ............................ GAGGGGATAGGAGTTACGATCCAGCCTGGTTGC 3077951 28 100.0 33 GCCTGGTTGC ............................ GTGGTTGCAGACCAATCAGCCCGCCAGCGGTTC 3078012 28 100.0 33 CCAGCGGTTC ............................ GTGGTTGCAGACCAATCAGCCCGCCAGCGGTTC 3078073 28 100.0 33 CCAGCGGTTC ............................ CAGCACGAAAAATTATTTACTGTCGTTGCTCAC 3078134 28 100.0 CGTTGCTCAC ............................ ACTAAAACTA ========== ====== ====== ====== ========== ============================ 20 28 32 GGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [40.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [383,84] Score: 0.18/0.18 # # Final direction: R [0.18,1.92 Confidence: HIGH] >NC_003143 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2895283 28 100.0 33 TTATCTTACT ............................ CCGGCGGTGATGGCAATTCTACGTGGGTTCGTT 2895344 28 100.0 33 TGGGTTCGTT ............................ CTGATACAATCATCCTATTTGTCCTATCCAGAA 2895405 28 100.0 32 CTATCCAGAA ............................ GACAAGAACCGAATCTTTCGCCGTGCCGTAAA 2895465 28 100.0 33 GTGCCGTAAA ............................ CCGAAATCATCAGATGTAATTAAGATTTTTGCT 2895526 28 100.0 GATTTTTGCT ............................ AGACTGATGCAAGATGGCGGTATGCGTACAGA ========== ====== ====== ====== ========== ============================ 5 28 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [356,65] Score: 0.18/0.18 # # Final direction: F [1.69,0 Confidence: HIGH] >NC_003106 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 32702 25 100.0 38 NNNNNNNNNN ......................... TTCCTAACTTCTTTCGTAAATGTTAGGAAAAGATTTAA 32765 25 100.0 40 NNNNNNNNNN ......................... ATTAGCATCAACAATTTTCGATGAAGGAGTAGACATACCT 32830 25 100.0 37 NNNNNNNNNN ......................... ACACTAATAATATAGGATTTGTCACGGAAGATGATAT 32892 25 100.0 36 NNNNNNNNNN ......................... ACTTTATCTTTATACCGTAACTCTATACTGGAGACT 32953 25 100.0 40 NNNNNNNNNN ......................... AAGATAGATGACAAGATAACAATAAATTTCATACAAATAG 33018 25 100.0 38 NNNNNNNNNN ......................... CGTAATTAAGCCCGATTTGTACACCACGCCGTGGGTTC 33081 25 100.0 38 NNNNNNNNNN ......................... TGATTGATCACAATGAGAAGACTGTAAAGCTGATAAAC 33144 25 100.0 37 NNNNNNNNNN ......................... TGTTGAGGCATAAATTAATCTATCCTTAATGAAAAAT 33206 25 100.0 40 NNNNNNNNNN ......................... TTCTTCCTCAGCCTCCATTTTGTTTATGATTTGTAGTGCC 33271 25 100.0 40 NNNNNNNNNN ......................... TTCAATAATCTCTATCTTTCCAAAATCTGTAAATGAAGAC 33336 25 100.0 40 NNNNNNNNNN ......................... TATGGGAATGTGAACAGCTTATCCTCATTTTATCCCCAAT 33401 25 100.0 40 NNNNNNNNNN ......................... TTTCTGTAATCTCCCTGCTTTCTTAACGTTATCTTATCAA 33466 25 100.0 39 NNNNNNNNNN ......................... ATGAACTGTTTGCCCTACTTGATAGCCACTGATTCAATT 33530 25 100.0 37 NNNNNNNNNN ......................... TCGCAAAGCGAAAAATTGAAAATTTTTACAATCAAAA 33592 25 100.0 43 NNNNNNNNNN ......................... GTAAAAATGATGTTCAATAAGTTGTATGGAGATGAAAATTCAC 33660 25 100.0 40 NNNNNNNNNN ......................... GAGATTATAGCCGAGATAATAGAAGAATCAAAGCCAAATT 33725 25 100.0 40 NNNNNNNNNN ......................... GTATACTCATTCATAATCTTTTCCATTAAAGCCAAAATAC 33790 25 100.0 43 NNNNNNNNNN ......................... GTAAGAGTGTTGAAATATTCATCTACAACTAAGTAATCAAAAT 33858 25 100.0 41 NNNNNNNNNN ......................... TATTCATTAATTCAGACAGAAGAGAAGAATTTTGATTATTC 33924 25 100.0 37 NNNNNNNNNN ......................... CTCACTCTCTTGTAATTTTTCTAGAGCGATTCTAAAT 33986 25 100.0 40 NNNNNNNNNN ......................... CAGTATATTTGTTTAAGTTTTCTTGCATATTTTGTCGCTT 34051 25 100.0 38 NNNNNNNNNN ......................... AATATATTGTTGATATTGAGGAAATTGGAACAAATACA 34114 25 100.0 40 NNNNNNNNNN ......................... ATATAACTTTACACACGTTACACAATAAACCATGAACCAA 34179 25 100.0 39 NNNNNNNNNN ......................... TTTATTTTTATTTTTTCCGTTAGGGGTGGGGGGATGTTA 34243 25 100.0 40 NNNNNNNNNN ......................... GGTACATCTTGGCTTACTATTTTATAGGCTGTCTTCTCTG 34308 25 100.0 36 NNNNNNNNNN ......................... GAAATCCTAAAGGCGGTTCAAAATCCTTAGCGTAGT 34369 25 100.0 38 NNNNNNNNNN ......................... TTTAATTTTCTTAAATAGTCAAAAAAAGAACTACTTCT 34432 25 100.0 39 NNNNNNNNNN ......................... TATTACTTTGTCACATGCGTAATACTAAGATTGTTATTA 34496 25 100.0 39 NNNNNNNNNN ......................... GAAGTAGTTAGTAAATGCTACTCGACGTGTGAAAATATA 34560 25 100.0 40 NNNNNNNNNN ......................... CTAAAAAGAGACTTTTAACTGGGGAGTTTAATCACCGTCG 34625 25 100.0 40 NNNNNNNNNN ......................... TAAAGCCGGAATTGTTACTGTACAGTTTTCTTTCTCAACT 34690 25 100.0 40 NNNNNNNNNN ......................... CTGTAAACTAGAGTTGAAATAACACTTCTATCAAGAACAA 34755 25 100.0 39 NNNNNNNNNN ......................... TTTGGCTATTTCGATAGCTTGATTTAAGTCACTAATAGA 34819 25 100.0 37 NNNNNNNNNN ......................... TTGGAATTTTGGCTCACCCCCTTTAAGTATTCATCTA 34881 25 100.0 35 NNNNNNNNNN ......................... TTAACGGAATCGGTCTAGGTGATTTGCCATTTAAC 34941 25 100.0 40 NNNNNNNNNN ......................... AGGAGGAGCTGAACGGTAACCCTATGGTTGACAGTGAGTT 35006 25 100.0 35 NNNNNNNNNN ......................... CTTTTCTTTTCTGAGTGTGGACAACAATTTCTAAA 35066 25 100.0 38 NNNNNNNNNN ......................... TCTTCCTTTTGTGGCTAATTGGTCAAATGATGTTATCA 35129 25 100.0 39 NNNNNNNNNN ......................... TAATATATCAAATATCTTTTGAATTGTTGAACAAGTTCT 35193 25 100.0 39 NNNNNNNNNN ......................... TTCTACTTATCAAACTAGTAGGTCTAACATATTACGTCA 35257 25 100.0 41 NNNNNNNNNN ......................... TAATAAGAAGAAAATTGCTAAATGTTTTGAATCATAATGCT 35323 25 100.0 37 NNNNNNNNNN ......................... AAGAAACCTTCAGAAATCCAAATTGAGATATGGTCAA 35385 25 100.0 41 NNNNNNNNNN ......................... ATCACTAAATCATTAACTCTGACTTTGAAAACCATCTCAGA 35451 25 100.0 38 NNNNNNNNNN ......................... AGCTTTCTTAATTAATCCACATGAACATGTCTTACTAA 35514 25 100.0 40 NNNNNNNNNN ......................... GCAAAGTAGTACCTTCGGTTTGTCTTATCCCGCTTAATAC 35579 25 100.0 41 NNNNNNNNNN ......................... AACTCCCTAACGAACTCTATCTTATCTTGCTTATCCAATAA 35645 25 100.0 42 NNNNNNNNNN ......................... AAGATCCACTAACAGTGCTAAAGCCGATCATTGGTAACCGCA 35712 25 100.0 39 NNNNNNNNNN ......................... TTTGAGTTACTGTCAAAGATTAGCAATTTTTGTTTTGTT 35776 25 100.0 37 NNNNNNNNNN ......................... TTTCTTAACTACAGTGAGTGGAAATATATCTTTAGGA 35838 25 100.0 37 NNNNNNNNNN ......................... GATCTTCATGACTATATTAAGTCTTTGGCTTTAGAAG 35900 25 100.0 38 NNNNNNNNNN ......................... TTTAACCCCTCTTCAGTATCAAACAAGATTATCTTGTA 35963 25 100.0 40 NNNNNNNNNN ......................... TTATGAAGAATAAGGATAACTTTGTTCTTGACAGAAGTGT 36028 25 100.0 35 NNNNNNNNNN ......................... ACGATTACTGGACAGGGTGGGATGGTGAAATTTAT 36088 25 100.0 42 NNNNNNNNNN ......................... CGTACTAGTAGTAGCTCTTCTCTCACTATTTGCAATAAATTT 36155 25 100.0 39 NNNNNNNNNN ......................... CTGAATTTCACCCATGAATATTCTACTCCTGCATAACTC 36219 25 100.0 40 NNNNNNNNNN ......................... GGTAAGCCTTTTCGATTGGTACATTTAATTTACTGCCGTC 36284 25 100.0 38 NNNNNNNNNN ......................... AGCAGAATCTATAGGGAATTCACTTGGAATTAATACTG 36347 25 100.0 39 NNNNNNNNNN ......................... TTAACTATCTCATTTTCCTTCGGCAATTCGGTCTGTTTT 36411 25 100.0 41 NNNNNNNNNN .........A............... TTTTCACTTTCAGCAATGACTAATGCTATACCTTCATTATC 36477 25 100.0 38 NNNNNNNNNN ......................... ATCTTATCTAAATCTATTGCTGAAGAAAAAGACAAAAG 36540 25 100.0 38 NNNNNNNNNN .........A............... ACAGAACACTCCTCATTTTCATCTTTATGTACACTCCA 36603 25 100.0 37 NNNNNNNNNN .........A............... ATCTTTGCTCAAACTGGAAACTTTGCAAATGAAGTTT 36665 25 100.0 44 NNNNNNNNNN .........A............... CTTTGGGGTTATTTAAAGCTTTCGGAGAAAGATATTAAAAAACT 36734 25 100.0 37 NNNNNNNNNN .........A............... TTTTTTCCTTCTATCCTGTATGATATTCTTTCATCAT 36796 25 100.0 37 NNNNNNNNNN .........A............... GGCATCTGAAATATTCTTTAAGTGAAGATGATAAAGA 36858 25 100.0 39 NNNNNNNNNN .........A............... TTTTATATACGCTCTGTAGTCTGTTTTAACATTAATATC 36922 25 100.0 39 NNNNNNNNNN .........A............... GGTGTCTCATCACCAATACAAATCGCTGAAGATATTGGT 36986 25 100.0 38 NNNNNNNNNN .........A............... TTTATAGATCTAACTAATGTTCGTATTAATTCTCTATT 37049 25 100.0 41 NNNNNNNNNN .........A............... GCAATGAGAGGCAGTGGAAGAGAACCAATTATAACGTTATA 37115 25 100.0 40 NNNNNNNNNN .........A............... TACAGGTGATGCATGACTGGGGATCGTGACCCCAGTCGCA 37180 25 100.0 34 NNNNNNNNNN .........A............... TTTTATGCAAACACACCTGTGATTATCGGAACAA 37239 25 100.0 40 NNNNNNNNNN .........A............... GGTAGGTTTATGACTTGAGGTACAGCATATGTGTATGCAT 37304 25 100.0 39 NNNNNNNNNN .........A............... GTGATATTGGCGGGTAGTTGACCAGTTGAGGTAAACGCT 37368 25 100.0 39 NNNNNNNNNN .........A............... GTGATACTTCAAAAGTAATGTAATTCTGAACGATATCAC 37432 25 100.0 39 NNNNNNNNNN .........A............... TTAACCACAGCTGTGGTATCAAACTTGTTGTGGGGCAAT 37496 25 100.0 37 NNNNNNNNNN .........A............... TTTCCGTTTGCTTTACGTAGAGAACGCCCTATACGTT 37558 25 100.0 40 NNNNNNNNNN .........A............... ATAGACTTTTCACCATTGCTGGTAAAGAAAATGTATATTA 37623 25 100.0 38 NNNNNNNNNN .........A............... TTAGATCTTTTGTAGGAATAAGAATTGCCCATTTCTTA 37686 25 100.0 37 NNNNNNNNNN .........A............... TTAGGGTCTGGTACCAGTTCCTTGAACTCTTCGAACT 37748 25 100.0 39 NNNNNNNNNN .........A............... GCCTCAAGCTTAGCGAGCTCCTCCCCATATTTACCGACG 37812 25 100.0 40 NNNNNNNNNN .........A............... TATATGTTAATACAAAATAGTTGTTACTAAAATCAAAATG 37877 25 100.0 40 NNNNNNNNNN .........A............... ATTTTCTACGAGATAATTTATTGTTGAGTACACCCTCATA 37942 25 100.0 37 NNNNNNNNNN .........A............... ATGAAAACGGACAGCCCATGATAGTCAATGACCCAAT 38004 25 100.0 40 NNNNNNNNNN .........A............... TTTTGTGGTGACATTATTTTAATTCCCCACGTACAATTTT 38069 25 100.0 40 NNNNNNNNNN .........A............... AGTTTCTATACCAGCTAACTCTTCAATTACTATTTATATG 38134 25 100.0 39 NNNNNNNNNN .........A............... TTTTATGTTGAAGGGGTTTAATATGCCACAGGAAGAGCA 38198 25 100.0 39 NNNNNNNNNN .........A............... TAATATATGCACTAGCTGTAATGAATGATATTCCAGTTT 38262 25 100.0 39 NNNNNNNNNN .........A............... TTTTTTCTTCTAAACTAATCATTTTTCACCCCTAATACT 38326 25 100.0 44 NNNNNNNNNN .........A............... GAAAGTTCCCATGGTCTGGAGATTCAAAATGAATGCTCATTAGT 38395 25 100.0 37 NNNNNNNNNN .........A............... ATTCCATTAAAATTTCCTTTAAATTTACATGATCTAG 38457 25 100.0 34 NNNNNNNNNN .........A............... GGTATTTAGGCGTTTCAACACAACATGAGGTTGA 38516 25 100.0 39 NNNNNNNNNN .........A............... GTGTACCAGTCGTCACTGTTTTTATTTGCGTAGTGGTCT 38580 25 100.0 44 NNNNNNNNNN .........A............... ACCCTCACTAAAAAGACCTTAGGTAATCTCTCCATTTGTTTGAT 38649 25 100.0 40 NNNNNNNNNN .........A............... ACCTGAACATTTAAATTTTAACTATTAAGAATGGTACATC 38714 25 100.0 45 NNNNNNNNNN .........A............... TTATATAAACTATAACATCCACTGAATGTTAGTCCACTTCTTGAA 38784 25 100.0 39 NNNNNNNNNN .........A............... AAGAGCCTCTTGACATTGGAGATTATTTAGTCGGTAATG 38848 25 100.0 39 NNNNNNNNNN .........A............... AAGAGCCTCTTGACATTGGAGATTATTTAGTCGGTAATG 38912 25 100.0 39 NNNNNNNNNN .........A............... AAGAGCCTCTTGACATTGGAGATTATTTAGTCGGTAATG 38976 25 100.0 38 NNNNNNNNNN .........A............... GTAGAGGTCCTCTAGCGGACTTTGTTAGTAAAAATTTT 39039 25 100.0 38 NNNNNNNNNN .........A............... ATCATCCTCCTCATTGTCGATACTCCCTTTGTGAATTT 39102 25 100.0 36 NNNNNNNNNN .........A............... GATAACAAATATAGCTACTCAGGTTTATAATGCTGG 39163 25 100.0 40 NNNNNNNNNN .........A..........A.... GTTTAATGCTCTAGCTAATTTCATAGCATAACCTTGGTAA 39228 25 100.0 41 NNNNNNNNNN .........A............... TTAATATAACAACACTTATATATCTGTTACGCAAAAATTAG 39294 25 100.0 39 NNNNNNNNNN .........A............... AATGTTTGCTTTTATGACAGTAAATAAAAACATGTTCCT 39358 25 100.0 39 NNNNNNNNNN .........A............... TCAAGAATCTTTTGCAATACATCACCTGAGATCCCATAT 39422 25 100.0 40 NNNNNNNNNN .........A............... AATAAGATGGGATCTGAGGAGGAATGGGAGGAAGAGGAAT 39487 25 100.0 38 NNNNNNNNNN ......................... TTGTTTCTTCCCCCTATGTCTACTTATTATTTTTTCCC 39550 25 100.0 40 NNNNNNNNNN ......................... AAGTTAGGATCTAGCGGAATAAAAGTATACTCAAGTTTAT 39615 25 100.0 41 NNNNNNNNNN ......................... AAAGCACAGTCAATAACGTTATCTGGTATCATATTATCAAA 39681 25 100.0 39 NNNNNNNNNN ......................... CTTTCTCCTTCCCTCTGATCTCTCGCTGAATTGAAAAGA 39745 25 100.0 41 NNNNNNNNNN ......................... GTAAGTATTGATGCTAACATTGACTTCGCTGTCCCAGGGGC 39811 25 100.0 36 NNNNNNNNNN .......................G. AAGTATAATAACGATAGTACTAAAATTAATTGATCC 39872 25 100.0 1 NNNNNNNNNN .....T..T.............T.A NNNNNNNNNN ========== ====== ====== ====== ========== ========================= 113 25 39 GATGAATCCCAAAAGGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.00%AT] # Reference repeat match suggestion: F [matched GATTAATCCCAAAAGGAATTGAAAG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-1.50,-4.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [80.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [317,58] Score: 0.18/0.18 # # Final direction: F [5.86,0.37 Confidence: HIGH] >NC_003197 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3094279 29 100.0 32 NNNNNNNNNN AC.GC.....TT.T............... ATCTTCATATTGCGTGACGCTGCCGATGAACG 3094340 29 100.0 32 NNNNNNNNNN ............................. TCTTTATCAGCTAACCATTTCCAGAACTCGTC 3094401 29 100.0 32 NNNNNNNNNN ...........T................. TATAATATGAATTAATTTTTGCGCATAACCTG 3094462 29 100.0 32 NNNNNNNNNN ............................. TGCCCGTTCTGCCTCTTCGCACTCTCGATCAA 3094523 29 100.0 32 NNNNNNNNNN ............................. TGCGTAATGGGCTACCTGAACTTCACATATCC 3094584 29 100.0 32 NNNNNNNNNN ...............A............T ATTAAGCGCGCAAAGTTTGGGTTAATTGGACA 3094645 29 100.0 32 NNNNNNNNNN ............................. CGTATTCGTCACACAGCCCCGTCCAGAAATGA 3094706 29 100.0 32 NNNNNNNNNN ..................A.......... TAACGAACTGAATAAAATGTCAGAAAGTGACG 3094767 29 100.0 33 NNNNNNNNNN ...C......................... GCAGCTTAGCGACGAAATTAAAACCGAACTCAC 3094829 29 100.0 32 NNNNNNNNNN ............................. TGCCAGTGACTACAGAAGCGTCGCTATCGGGG 3094890 29 100.0 32 NNNNNNNNNN ............................. ACCGATAAACAACCGCATAGCCTCTTTCGTTT 3094951 29 100.0 32 NNNNNNNNNN ..A........T................. TGCTCAATAACGTCGTAAATAGCGTAAGCTGG 3095012 29 100.0 32 NNNNNNNNNN ............................. TATTTCGCCTTCGGCACTGACGTCACCGTCAA 3095073 29 100.0 32 NNNNNNNNNN ............................. GTCGCGTTCGTTGCCGGTATAGACCAGCGTCA 3095134 29 100.0 32 NNNNNNNNNN ............................. ATCGAATCGAAACCCCAGCCACAGAAATAATT 3095195 29 100.0 32 NNNNNNNNNN ............................. GCTCATGTCAAACGCCATCAGCGTTCCGGCAT 3095256 29 100.0 32 NNNNNNNNNN ...............A............. AATCGCCAGCCTCGGAAATATTCCATCCTCCG 3095317 29 100.0 32 NNNNNNNNNN ............................. AGGAACTAAACAGCCTGACCGTTGAGGATCTG 3095378 29 100.0 32 NNNNNNNNNN ............................. ACCGGACAAATCTTTTTTTTCCTGTTCCTGTT 3095439 29 100.0 32 NNNNNNNNNN ............................. GGGCACTATGAACGGATCGGCGCTGATGCCGG 3095500 29 100.0 32 NNNNNNNNNN ............................. GGTAAAGCCACACCATTTTTTATTGACCTCGC 3095561 29 100.0 32 NNNNNNNNNN ............................. GTGGTGGCCTCAAATAAATTCGAGCGCTGGAG 3095622 29 100.0 32 NNNNNNNNNN ............................. TCGACGTGGACGAGGAGTTACTCAACCGCTGC 3095683 29 100.0 32 NNNNNNNNNN ............................. AGCGCCACATGGCCCACCGGCACCACCCGATC 3095744 29 100.0 32 NNNNNNNNNN ............................. AAATGACCAAATCAGAAATCTTCACCAAAGCC 3095805 29 100.0 32 NNNNNNNNNN ............................. TAATGGCCACAGTAAGTCAAACGGTTCTGGAA 3095866 29 100.0 32 NNNNNNNNNN ............................. GAGTCCGGGGGTTATATAGTTATTTAATGAGC 3095927 29 100.0 32 NNNNNNNNNN ............................. TTGGGCGTCGGTTTTTTCAGGTTTAGGTCCGG 3095988 29 100.0 32 NNNNNNNNNN ............................. TCAACTGTCAGTTCGTCGTTAGCCAGTAATTC 3096049 29 100.0 32 NNNNNNNNNN ............................. CTGAAAACGCATGGAATCCGGTATAAACAGTC 3096110 29 100.0 32 NNNNNNNNNN ............................. GATGTAACTGATAGCGAAATATATTGGGATAA 3096171 29 100.0 32 NNNNNNNNNN ............................. GAAACGTAAACAGGGTAAGATACAACTCTGCA 3096232 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 33 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [61.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [99,298] Score: 0.18/0.18 # # Final direction: R [0,2.1 Confidence: HIGH] >NC_003198 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2926184 29 93.1 32 GGTGAAACGT --........................... GGACAGCAACCCGTGTCGGATATCAGACAGAT 2926245 29 100.0 32 TCAGACAGAT ............................. ACGCGAATCGCCAATCGCCGCCGCGTGAATTG 2926306 29 100.0 32 GCGTGAATTG ............................. CCACGATGTATGCCGACCGTGATTTTTACCGC 2926367 29 100.0 32 TTTTTACCGC ............................. AGATACGCCTTTACGTCGCCCTCTTTGGCGCG 2926428 29 100.0 84 CTTTGGCGCG ............................. TAAAACACCGGTTGCGCAACCTCCGCGGGGATCGGTTTATCCCCGCTGGCGCGGGGATCGGTTTATCCCCGCTGGCGCGGGGAT 2926541 29 100.0 GCGCGGGGAT ............................. TCTAAATCTA ========== ====== ====== ====== ========== ============================= 6 29 42 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [18,84] Score: 0.18/0.18 # # Final direction: R [0,2.1 Confidence: HIGH] >NC_003112 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 46816 24 100.0 54 NNNNNNNNNN ........................ CGGCTTGTTCGGTTTCGGTTTTTTTTTTTTGAGGTTTCGGGCAACTTCTAAACC 46894 24 100.0 44 NNNNNNNNNN ........................ TAGACCTTAGAACAACAGCAATATTCAAAGATTATAAAAGACCT 46962 24 100.0 1 NNNNNNNNNN ........................ NNNNNNNNNN ========== ====== ====== ====== ========== ======================== 3 24 49 GTCATTCCCGCGCAGGCGGGAATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [4,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.70,-5.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [1454,6046] Score: 0.18/0.18 # # Final direction: F [0.37,0.18 Confidence: MEDIUM] >NC_003143 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2769294 28 100.0 32 NNNNNNNNNN ...GATTAT................... TCAGGGGACTGGCGAACAATGTCTTTCATGAT 2769354 28 100.0 32 NNNNNNNNNN ............................ GAAAAGGTAAGATGGGCAAGCTTCTAGTAGTT 2769414 28 100.0 32 NNNNNNNNNN ..................A......... ATTATCTGAATGGCATTTTCTTTGGCGCAGAT 2769474 28 100.0 32 NNNNNNNNNN ............................ TCGCCATTCCGTGAACCTGAGCGCGTTCGCGA 2769534 28 100.0 32 NNNNNNNNNN ............................ ATATTCTCGAGCGATAGCAATAGCCATTCCAC 2769594 28 100.0 32 NNNNNNNNNN ............................ TCGGTCAAACAAATTTAGGCGACGATTTAACA 2769654 28 100.0 32 NNNNNNNNNN ............................ AAAAAGAATTTGGGATTAAAGTTACCCATCAG 2769714 28 100.0 33 NNNNNNNNNN ............................ TCAATGCCTGAATCTCTGGCGTGATAGCTGCGG 2769775 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 9 28 32 TTTCTAAGCTGCCTGTGCGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [355,336] Score: 0/0.18 # # Final direction: R [0,1.42 Confidence: HIGH] >NC_003155 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================== ====== 8981430 26 96.2 35 GCACGCACTA ...........T.............. CACGCGGCTCAGGGCGGGGCCTGGAGGCGGGACTA 8981491 26 100.0 35 GGCGGGACTA .......................... CACGAAGTGAGCTTCCGGTTCGTGGTGGTGACGGC 8981552 26 100.0 35 TGGTGACGGC .......................... CACCATGGCGAAGTCGGCGCCTTCGGCTTCCTCGG 8981613 26 100.0 35 GCTTCCTCGG .......................... AACAACGGGTCGCGCCGCAACTGCTGGCCGACCGT 8981674 26 100.0 35 GGCCGACCGT .......................... AACTGGACCTCACCGCGCTGGATCCAGGGGAACGG 8981735 26 100.0 35 AGGGGAACGG .......................... AACCTCATCCTCGGCATCGACGAGAGCATCACCCA 8981796 26 100.0 35 GCATCACCCA .......................... AACTTCGTCGCTGTCAGCTCTGCCCGCAGCTCCGT 8981857 26 100.0 35 GCAGCTCCGT .......................... AACCTTCTCGTCTTGCAGGAACGCCAGCGCGCCGG 8981918 26 100.0 35 AGCGCGCCGG .......................... AACTGCGGCACCGAGACCTCGAAGCCGTCGGCGAG 8981979 26 100.0 35 CGTCGGCGAG .......................... AACTGGCCGTTGTCGTCCCTGGAGACGGAGCCCCA 8982040 26 100.0 35 CGGAGCCCCA .......................... AACGACCGCTTCCTCGTCGAGCAAGCCGTCCTGCA 8982101 26 100.0 35 CCGTCCTGCA .......................... AACGGGGTGTCCGGCCGCACGAGAAGCTGGTGCGT 8982162 26 100.0 35 GCTGGTGCGT .......................... AACTACTGGCACCAGAGCCTCGGCCGGAACCCGAA 8982223 26 100.0 35 GGAACCCGAA .......................... AACCCCTGGCACCTCCAGCGCATGGCCGCCCTCGA 8982284 26 100.0 35 CCGCCCTCGA .......................... AACTCCCGTTTCGGGCCCCGCCGTGTAGCTGCGAG 8982345 26 100.0 35 TAGCTGCGAG .......................... AACACGAAGACCTCCGCACCGAAGCCGCCCGCCAA 8982406 26 100.0 35 CGCCCGCCAA .......................... AACAGCCAGTCCATGCCGAAGCCTCGCGGGTCGAC 8982467 26 100.0 35 GCGGGTCGAC .......................... AACATGGGCCGCTGCTCCGTCGAGGGCTCGCAGAT 8982528 26 100.0 35 GCTCGCAGAT .......................... AACGACAGTGAGGGCTGGCTAGACAAGAACGGGGA 8982589 26 100.0 35 AGAACGGGGA .......................... AACAGCCAGTCCATGCCGAAGCCTCGCGGGTCGAC 8982650 26 100.0 35 GCGGGTCGAC .......................... AACGTCTCGGTAACGGGCGGAACCAATTTCATCGA 8982711 26 100.0 35 ATTTCATCGA .......................... AACGCCAGCCGCCACGCAAAGAAGGTCCGTGACGA 8982772 26 100.0 35 TCCGTGACGA .......................... AACCCCGCTTCAGCTCGCGAGGGGCTCGGACAGTG 8982833 26 100.0 35 TCGGACAGTG .......................... AACACCGACAGTGTGGTCTGGCCGAGACCTGAAGC 8982894 26 100.0 35 GACCTGAAGC .......................... AACGGTCGACAGGCGGTAGGTGTCGACGCCGAAGC 8982955 26 100.0 35 ACGCCGAAGC .......................... AACGCCAAGCTGGCCAGCGCCAAGGGCTTCGGTGG 8983016 26 100.0 35 GCTTCGGTGG .......................... AACCCGACGACGGCCGAGCTCAACGCGGGCAGCGA 8983077 26 100.0 35 CGGGCAGCGA .......................... AACCATCCATCCCGTGCACGGTCCTGCCGGTGGAC 8983138 26 100.0 35 GCCGGTGGAC .......................... AACCTGTACCGGACCTAGAGCAGCAGATCGCCCAG 8983199 26 100.0 GATCGCCCAG .......................... AACTCGATCTGCG ========== ====== ====== ====== ========== ========================== 30 26 35 CGACCCACCTCCGCTCGCGCGGAGAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [4,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.40,-3.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [35.0-36.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [389,787] Score: 0.18/0.18 # # Final direction: R [0.37,0.96 Confidence: MEDIUM] >NC_003155 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 8983321 29 100.0 32 TGATGGCCGT ............................. GTTCGCGATGCCGTGGACGTTGGTGGTGTCCG 8983382 29 100.0 32 GTGGTGTCCG ............................. AGGTGCTAAAGCGGTAGCATTCACGGGAGCTC 8983443 29 100.0 32 ACGGGAGCTC ............................. CGATGCCCGCATTCCAGCCTGCGTAGTACAGG 8983504 29 100.0 32 GTAGTACAGG ............................. CACCGAGCAACGCTTCTGCCAGTTACGGACCG 8983565 29 100.0 TTACGGACCG ............................. GCTCACGGCC ========== ====== ====== ====== ========== ============================= 5 29 32 CGACCCACCTCCGCTCGCGCGGAGAGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-10.20,-11.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [33.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2280,418] Score: 0.18/0.18 # # Final direction: F [0.82,0.37 Confidence: MEDIUM] >NC_003155 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 8993350 29 100.0 32 GTCAGGAAGG ............................. ACACGGCTGTTGAGCCGGACGGCGCCGAGACC 8993411 29 100.0 32 CGCCGAGACC ............................. GCCCGATCGAGGGCGGTGTGAGCATGAGTATC 8993472 29 100.0 32 CATGAGTATC ............................. ACGTCGTGGGACTGGTTGGCCGCCGCGTTGAA 8993533 29 100.0 32 CCGCGTTGAA ............................. CAGGTCGCCAGCCGCTGCCCGGTGTCGCAGTC 8993594 29 100.0 32 TGTCGCAGTC ............................. CCCCATGATGATTTGGCCAGGCACCCGAACCA 8993655 29 96.6 32 ACCCGAACCA ............................C CACTAACTCAAGACGCAATGATCACAATCGGA 8993716 29 100.0 32 CACAATCGGA ............................. GCGATGATGCCGGCGTCGACGGCGATGGGGAA 8993777 29 100.0 32 CGATGGGGAA ............................. TCGTTGAAGCTCATGCCGGTGCGCTTCTCCAG 8993838 29 100.0 32 GCTTCTCCAG ............................. CCGCCCGCGCCGCACTCATCCCCGACCAGGCG 8993899 29 100.0 32 CGACCAGGCG ............................. CCCGTGAGCAGCCGACGTTCGGTGACCGGGGG 8993960 29 100.0 32 TGACCGGGGG ............................. CCGTCGATGAGCGCCTAGCCTTGCTGGAACGA 8994021 29 100.0 32 GCTGGAACGA ............................. TCCATGCAGCACCGCGGCGACCGCCACCCCCC 8994082 29 100.0 32 GCCACCCCCC ............................. TTGGGGCAGTAGGTCAGCGAGGATGCCGAGCC 8994143 29 100.0 32 ATGCCGAGCC ............................. GAGAACTACGACGAGATGGCCAAGAAGACCGT 8994204 29 100.0 32 AGAAGACCGT ............................. AACGACACGGCCGCCTTCAGCCCGCCCCAGAC 8994265 29 100.0 32 CGCCCCAGAC ............................. CCGCCCGCACCACTGACGTGCGACGAGTGCGG 8994326 29 100.0 32 ACGAGTGCGG ............................. GCGCGCGGGTCCAACGTCCAGGTCGTCCTCAC 8994387 29 100.0 32 TCGTCCTCAC ............................. TCCACCACGCGCTCCAGGAAGCTGGTCCCCTC 8994448 29 96.6 32 TGGTCCCCTC ............................T GGGTGTTCGTCGGCATCCCGGTGCTCGTCGTC 8994509 29 100.0 32 GCTCGTCGTC ............................. CTCGGCAAGTCCGGCGCCGACGCCCTCTACGA 8994570 29 100.0 32 CCCTCTACGA ............................. CGCAGCGTCGGGTGCTGCCGCTTCATCAGGAC 8994631 29 100.0 32 TCATCAGGAC ............................. CAAGCGCGGTGTACACGATGTGGGGGTGGATC 8994692 29 100.0 32 GGGGTGGATC ............................. GTCCGCGCGGACCCGGGCGTCGGTGTCGACGC 8994753 29 100.0 32 GTGTCGACGC ............................. CAGTTCGGCAGCCTCCTCGGCGACATCTTCGG 8994814 29 100.0 32 ACATCTTCGG ............................. TGTGACGCCTGCCCCATCGCCAACGCGACGCC 8994875 29 96.6 32 ACGCGACGCC ............................T TCTTCGCCCCGGCCGTCCCCGCCGCCGCCTTC 8994936 29 100.0 32 CGCCGCCTTC ............................. GCCCGCACCTGCAGACGTACGTCCAGTCCAAC 8994997 29 100.0 32 CCAGTCCAAC ............................. TCCTGGGACGCCCTCAAGGTCCCGAACGTCTG 8995058 29 100.0 32 CGAACGTCTG ............................. GTGGGGGAGGCTGCGGAGGCGCAGACCACGTT 8995119 29 100.0 32 AGACCACGTT ............................. TACGCGTGGGGCGGCATCCTGGTGCGCACCTC 8995180 29 100.0 32 TGCGCACCTC ............................. GCTGCCATCGAGTCATCCCCTGCGACCCCGGG 8995241 29 96.6 32 CGACCCCGGG ..T.......................... GTTTCGTACCCGAGGGCCGGGCCGATGATGGT 8995302 29 100.0 32 CGATGATGGT ............................. GACATGATCGCAGCCCGATTCCTGCGGCAGGA 8995363 29 100.0 32 TGCGGCAGGA ............................. TCCACGGACGGCAACTGATCCCCGGCATGAAC 8995424 29 100.0 32 CGGCATGAAC ............................. GTCAACCGCGCGTTCGGCCGCAGCCGGCTGGT 8995485 29 100.0 32 GCCGGCTGGT ............................. CCTGACCGGCTGGCGTTCCAGGCGACGTCGAC 8995546 29 100.0 32 CGACGTCGAC ............................. TACGCCATCGCCTGGCGTAACGCGCTCCTCAC 8995607 29 100.0 32 CGCTCCTCAC ............................. ACCGTCACGTTCGACACGCGGGTCGGGTTGTA 8995668 29 93.1 32 TCGGGTTGTA ............T..A............. GACATCCACGGCAACCCGCTGAAGCTGACCCG 8995729 29 100.0 32 AGCTGACCCG ............................. AAAACCGGGCGCGCCGTGCAACCTGACGGCCC 8995790 29 100.0 32 CTGACGGCCC ............................. ATCAGCAGCATCGCCAAGGCCATCGTGGCGGG 8995851 29 100.0 32 TCGTGGCGGG ............................. GAGCCGGAGGCCCGGCAGACCGCCGTCGCCGA 8995912 29 100.0 34 CCGTCGCCGA ............................. TCCGCCCGAAGAAGGACCGCAGTACCGCCCCGTA 8995975 29 100.0 32 CCGCCCCGTA ............................. GCCCTCAACAGGCCGTCAACCGAGCACGCCAA 8996036 29 100.0 32 AGCACGCCAA ............................. ACGGACAAGGGCATCACCGTCCTTTTCACCTC 8996097 29 100.0 32 TTTTCACCTC ............................. GAGACCCTTGCGAAGACCAGGCGTGCCAGTGC 8996158 29 100.0 32 GTGCCAGTGC ............................. TCGCGGTGCCGCCACAGCGACGGTCGGGCGCC 8996219 29 96.6 32 GTCGGGCGCC ............T................ CTGATGCTCGACATCGCGAAGGGCATGCAGGC 8996280 29 100.0 32 GCATGCAGGC ............................. GCCGAGAACGAGCGGCTGAAGGCGGCGAAGCC 8996341 29 100.0 32 CGGCGAAGCC ............................. GCCATGGAGTAGCCCTGCTTGAAGGCGTCGTA 8996402 29 100.0 32 AGGCGTCGTA ............................. TCGGACACCGAGGTCAGCGCGTGGCTGCTGTC 8996463 29 100.0 32 GGCTGCTGTC ............................. CCACCGGGGACGTAGCCGACGTCCGCCGCCCC 8996524 29 96.6 32 CCGCCGCCCC ............T................ TCGGAGCTGGCCAGGGAGCTGACCACCCGGGT 8996585 29 96.6 338 CCACCCGGGT ..........T.................. CTTCCAGGTCAGCGGGAACTGGCCAAGGCTGAGTGCTCTCCGCACGAGCGGTGGTGAACCGAAGCCGGAGACCGAGCAGCAGGACCAGCCTCAGTGCTCTCCGCGCCAGCGGAGGTGAACCGTACTGGATCTTCCCCGTCCGTGACGAGCACGGGGTGCTCCCCGCGCGAGCGGAGGTGAACCGCCATGGTGATCTACCACAGCGAACTTGCGGGCGTGCTCTCCGCGCGAGCGGAGGTGAACCGGTCCGCCTCGACGGTCTGCACCGGGCGAAGATGTGTTCTCCGCGCGAGCGGAGGTGAACCGTACCCGGTTCAGTGAAGGTCAGCTGGGGCCGT 8996952 29 96.6 CTGGGGCCGT ......................C...... ACGAAGACGC ========== ====== ====== ====== ========== ============================= 55 29 37 GTGCTCTCCGCGCGAGCGGAGGTGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [4,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-11.30,-10.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [125,102] Score: 0/0.18 # # Final direction: F [0.78,0 Confidence: HIGH] >NC_003155 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 9002720 29 100.0 32 CTGAGACGGG ............................. GACGCCGACCGAACCGTCATGCTGACCGTGGA 9002781 29 100.0 32 TGACCGTGGA ............................. GCCACCGTGGATATCAAGCTGGCCGAGCGGAA 9002842 29 100.0 32 CCGAGCGGAA ............................. TGGCGCCAGCCGATGGCCGTGCGCTCACCGTC 9002903 29 100.0 32 GCTCACCGTC ............................. GACGGGGACACGCTTCGCGTGATGCTGGACCA 9002964 29 100.0 32 TGCTGGACCA ............................. GCGGACAACGAGGTGCGGGACGGGATCCGGTC 9003025 29 96.6 GGATCCGGTC .....................A....... ACCGGCCAG ========== ====== ====== ====== ========== ============================= 6 29 32 GTGCTCTCCGCGCGAGCGGAGGTGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [4,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-11.30,-10.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [36.7-35.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [118,200] Score: 0/0.18 # # Final direction: F [0.78,0 Confidence: HIGH] >NC_003210 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 544375 29 100.0 36 AAGTTAGTGG ............................. CGATAAAAAAGATATTAGTAATTTATTTGCAATTTA 544440 29 100.0 36 TTGCAATTTA ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 544505 29 100.0 35 AGCATGTAGC ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 544569 29 100.0 37 TGGGTTACAA ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC 544635 29 96.6 CCACCAAAGC .......................A..... GAAAACCTGT ========== ====== ====== ====== ========== ============================= 5 29 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [239,261] Score: 0/0.18 # # Final direction: F [0.78,0.27 Confidence: MEDIUM] >NC_003212 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2768992 36 100.0 30 NNNNNNNNNN TGG..T....T....G.....G.............. TATTGCATAGATACTAATGTTTCCACTTGT 2769058 36 100.0 30 NNNNNNNNNN .................................... AACATGAACAGAGATTCAGCATCGTTGCTA 2769124 36 100.0 30 NNNNNNNNNN .................................... TTGTATTATTTTGGTGATTGCCTTTCTGTA 2769190 36 100.0 30 NNNNNNNNNN .................................... TTTTCCGAGCGCTGCATCTTTTATACTGTT 2769256 36 100.0 30 NNNNNNNNNN .................................... CTTGCTTCTCTTGTTGTTCCTCTATCCATT 2769322 36 100.0 30 NNNNNNNNNN .................................... ATTTATTATGAGTTTGGGACTGGTGAGAAA 2769388 36 100.0 30 NNNNNNNNNN .................................... TATAATGAGTTAGATGGCATTATATGCGAC 2769454 36 100.0 30 NNNNNNNNNN .................................... TCGACGATTTAACAGATTTTACAGATGCTT 2769520 36 100.0 30 NNNNNNNNNN .................................... ATAATGCAGTAAATAAAGAAATACTTTGCA 2769586 36 100.0 30 NNNNNNNNNN .................................... TATCCTAGGCAAAGTTACCAAAGCGCTACG 2769652 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 11 36 30 GTTTTGTTAGCATTCAAAATAACATAGCTCTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.22%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.40,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [63,128] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_003228 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2998070 29 100.0 34 TTTTGCACAA ............................. TAACCGGACTTACAGCTGATAATCAGTTAGAGTA 2998133 29 100.0 36 AGTTAGAGTA ............................. CAATTACACAGATCGTAAAACTTGCCGAGCTATTTA 2998198 29 100.0 34 GAGCTATTTA ............................. CGTATTCGCCATCGAACCGAAGACCGGCGTGTAT 2998261 29 100.0 34 CGGCGTGTAT ............................. AGCAAGGGAAACTGTACGATGTACAAGTACTCGG 2998324 29 100.0 37 AAGTACTCGG ............................. CTGATGAAGCGATTAAGAAGATCAATGTGATGATTAA 2998390 29 100.0 36 TGATGATTAA ............................. TCAGTTACCCTGACGGCCAATCCTTCCGCCATTTCC 2998455 29 100.0 34 CGCCATTTCC ............................. GAAGTCCGCTGAAATCCAGCCCGCCTTTTCGTTC 2998518 29 100.0 CTTTTCGTTC ............................. TCTACCCAT ========== ====== ====== ====== ========== ============================= 8 29 35 ATTTCAATTCCATAAGGTACAATTAATAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.40,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [248,214] Score: 0/0.18 # # Final direction: R [0,4.87 Confidence: HIGH] >NC_003228 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================================== ====== 4661170 47 95.7 30 AAAGCGATGC ...A......A.................................... GATTCGAAGATATGCAAATGTAGCAAGTAT 4661247 47 100.0 29 TAGCAAGTAT ............................................... TGATTTGGCATCTGCTATTTGATCAATCA 4661323 47 100.0 30 TGATCAATCA ............................................... GCAATTACCCCAATCCTTCATGCCCTGAGA 4661400 47 100.0 30 TGCCCTGAGA ............................................... TTTGCCGGATACCTTAGTAGTGGTAGTCAC 4661477 47 100.0 30 TGGTAGTCAC ............................................... GATAGCGGCGGGGGAGCGAACGGCAACGAA 4661554 47 100.0 29 CGGCAACGAA ............................................... AGAACCATCACGAATCAGATTCCAATACT 4661630 47 100.0 30 TTCCAATACT ............................................... ATCCTGCGAAATTTCGACCTTATCGCCGGG 4661707 47 100.0 29 TATCGCCGGG ............................................... GTTATTGTAAGAGTCATAAAAGCGTGTAC 4661783 47 100.0 30 AAGCGTGTAC ............................................... TTAAATACCTCGTCAAAAGCGGATTCCGCA 4661860 47 100.0 30 GGATTCCGCA ............................................... GTCTTGGGAATCTGTACGATTGTTGCAGAA 4661937 47 100.0 30 TGTTGCAGAA ............................................... TCTTAACAATGCGCTGCATCTCTCGAATAA 4662014 47 100.0 30 TCTCGAATAA ............................................... CCACAAATCTTTATTCCAGTTGGCGTACCG 4662091 47 100.0 30 TGGCGTACCG ............................................... AAACCATTCAAATATCTGCGCAATTGGGTA 4662168 47 100.0 29 CAATTGGGTA ............................................... ACTGTTGAACTTTTTACTCGTAATCCTAA 4662244 47 100.0 30 GTAATCCTAA ............................................... TCAATTGACCCGAAAGTGCAACGGTCAGGT 4662321 47 100.0 29 ACGGTCAGGT ............................................... TAAGGATAGGAATATTCAATCTTATACAG 4662397 47 100.0 29 TCTTATACAG ............................................... GCATAAAGAACTGGCATATTACCACTGAC 4662473 47 100.0 29 TACCACTGAC ............................................... AACAGAACTATCAGACACTATCTCTGAGT 4662549 47 100.0 565 ATCTCTGAGT ............................................... CGAATGGTCAAAACTATGCTGCTCAGGTTAGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGCCTCCAACTCTCGAAGAGCAGCAACAATATCGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGCTTCTTGCGGTTTAAACACTTCATTAAAAGCGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGCAAACTTAGTAACAGAACCGACAATATTAGAGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGCTCTTTTAACCTTTTATTAGCATTTCTCAAGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGCTGCTTAGTTATAACGCAGAATATGCACATGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGCAGTGTCTTAAAGAGGTGATTAATGAAATGGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGCAGACTTAGCCATTTGTGTGGCATTCACCA 4663161 47 100.0 GCATTCACCA ............................................... TTACTCCGCA ========== ====== ====== ====== ========== =============================================== 20 47 57 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.96%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [445,110] Score: 0.18/0.18 # # Final direction: R [0.18,0.78 Confidence: MEDIUM] >NC_003228 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================================== ====== 4662626 47 100.0 30 GCTCAGGTTA ............................................... CTCCAACTCTCGAAGAGCAGCAACAATATC 4662703 47 100.0 30 CAACAATATC ............................................... TTCTTGCGGTTTAAACACTTCATTAAAAGC 4662780 47 100.0 30 CATTAAAAGC ............................................... AAACTTAGTAACAGAACCGACAATATTAGA 4662857 47 100.0 29 CAATATTAGA ............................................... TCTTTTAACCTTTTATTAGCATTTCTCAA 4662933 47 100.0 29 CATTTCTCAA ............................................... TGCTTAGTTATAACGCAGAATATGCACAT 4663009 47 100.0 29 ATATGCACAT ............................................... AGTGTCTTAAAGAGGTGATTAATGAAATG 4663085 47 100.0 29 TAATGAAATG ............................................... AGACTTAGCCATTTGTGTGGCATTCACCA 4663161 47 100.0 GCATTCACCA ............................................... TTACTCCGCA ========== ====== ====== ====== ========== =============================================== 8 47 29 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.96%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1901,110] Score: 0.18/0.18 # # Final direction: R [0.18,0.64 Confidence: MEDIUM] >NC_003272 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 1727817 35 97.1 37 TTCATCATCA ....T.............................. CAATTATCCCCCAAGACCAATCCCCTGAAAGGGGAAG 1727889 35 100.0 38 AAAGGGGAAG ................................... AGTTACACCAGTTGGATCTGGACTTGGTATTGGGACAT 1727962 35 100.0 40 ATTGGGACAT ................................... AGATGTGGTTGAAACTCAACCCGAAGTGGTTGAAAATCAG 1728037 35 100.0 TGAAAATCAG ................................... CCTACCCTTG ========== ====== ====== ====== ========== =================================== 4 35 38 GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.29%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [80.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [84,338] Score: 0.18/0.18 # # Final direction: F [0.64,0.59 Confidence: LOW] >NC_003272 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 1732269 35 100.0 39 AACAGGTAGG ................................... TATCAGAAATTGTGTGTTTGGGTCTAACTTATTAAAAAG 1732343 35 100.0 40 TATTAAAAAG ................................... ACTGCTAAGAAAAGCTTGAATTTCTGCATCGATTATATGT 1732418 35 100.0 39 GATTATATGT ................................... ACGCTTCCTAGAAAATTTATTCCTGGAATTCTAGATATA 1732492 35 100.0 39 TCTAGATATA ................................... TCTTGTGCCTTAATGGCAACAACAAGCAAAGCGGAGAGT 1732566 35 100.0 34 AGCGGAGAGT ................................... GTTTTCACCGATTCCGACAAAACTTGTTCCACCA 1732635 35 100.0 35 TGTTCCACCA ................................... TTTATTGTGCGCCTACACCTCCGATAGAAATTTCT 1732705 35 100.0 38 AGAAATTTCT ................................... AAATAAAAGACAAGGAAATATATAAAGAAAATTATTAT 1732778 35 100.0 39 AAATTATTAT ................................... ACTATCATAATTTGTTGGGCTTGAAAGCGGACCAACTAG 1732852 35 100.0 40 GACCAACTAG ................................... CTAATAAAAAACGGAACTGGTGGATAGAAAAAGTTTGTAA 1732927 35 97.1 39 AAGTTTGTAA .....G............................. CAATAAAATGCAAGAAACGATAATGCGAGCAACAAAACG 1733001 35 97.1 35 CAACAAAACG .....G............................. TTCGGCCTGGCGTTTGAGTCTTTCAATCTCTTCAG 1733071 35 97.1 36 ATCTCTTCAG .....G............................. CTTCAAACTGGTTATCAATAGGAACGTAAACCAAAA 1733142 35 97.1 39 TAAACCAAAA .....G............................. TGGATTTAATTTTAATGTATCTCTAAGGTAACAAGCCCG 1733216 35 97.1 36 AACAAGCCCG .....G............................. CATTGGAATTTGCCAAATTAAATGCGGCTTTTTTTT 1733287 35 97.1 GCTTTTTTTT .....G............................. ATAATCAATA ========== ====== ====== ====== ========== =================================== 15 35 37 GTTTTAATTCCTTTACCCCTCACGGGGATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.29%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [50.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [615,168] Score: 0.18/0.18 # # Final direction: R [0.18,0.64 Confidence: MEDIUM] >NC_003272 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1836813 37 100.0 37 CACCTGGGCG ..................................... AATTTTCTCTGGTAAAACAAACTTTTCTTTGATGCGA 1836887 37 100.0 35 TTTGATGCGA ..................................... TTCGGCGGGCAATCTTAAAATACCCTGACCTGAAA 1836959 37 100.0 33 TGACCTGAAA ..................................... GGCAGCACAATACTTATCACGGGCTAAATTCTG 1837029 37 100.0 35 CTAAATTCTG ..................................... CTTTGGCTAATGCCTGCCAAGCTAATGGAAGTTAC 1837101 37 100.0 35 TGGAAGTTAC ..................................... CTATCTTCAGCGTATTGTAAAGCTTGCTTTAATTG 1837173 37 100.0 35 GCTTTAATTG ..................................... TCTACACTGACCAATGTTGAAAGTATCAAGACAGG 1837245 37 100.0 41 TCAAGACAGG ..................................... AAATGACAACTATTATTCAATAACAACGATGCCAAAGTATG 1837323 37 100.0 34 CCAAAGTATG ..................................... AGCTATTGCACATTTACAAAAGCTCGGATATCAA 1837394 37 100.0 39 CGGATATCAA ..................................... TCGAAATCCGGTGAGGATACCTTACTTTTAGCCCGTAAA 1837470 37 100.0 33 AGCCCGTAAA ..................................... CGGATAATCCCTTACGGATGGATTCACAGATTT 1837540 37 100.0 37 TCACAGATTT ..................................... TGAAACTCAGTTCGTGCCTCATCAAATTTAATCAAAT 1837614 37 100.0 36 TTAATCAAAT ..................................... TTGTGCTGTTCCTGCTGAGTAGCTGGAATAAGCAGC 1837687 37 100.0 AATAAGCAGC ..................................... ATCAGATG ========== ====== ====== ====== ========== ===================================== 13 37 35 GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.50,-7.40] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [53.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [258,39] Score: 0.18/0.18 # # Final direction: F [4.68,0.27 Confidence: HIGH] >NC_003272 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 2178606 35 100.0 42 GTTTTATAAA ................................... TCTGGATTATATTGTATGCAACGTAGGTTGCTCAATATATTT 2178683 35 100.0 40 CAATATATTT ................................... TGTCTATGATAGGGCAAACAAGGCATAATATGTCTTTTAT 2178758 35 100.0 39 TGTCTTTTAT ................................... AATTTTTTAGGTTGCCACAAAAGCAACCGAACAGTTAGG 2178832 35 100.0 40 AACAGTTAGG ................................... TGAAAGCGCTCAGCGCCCGCTGGGTAGATCTGACTCGATC 2178907 35 100.0 41 TGACTCGATC ................................... AAGATGAAATCGACCAAGCGTGGAGCGCTGGTCAGCATACT 2178983 35 100.0 39 TCAGCATACT ................................... AAGTAGAAGAAGCTCGCAAAAAGGCTGCAACTGCTTCAA 2179057 35 100.0 41 ACTGCTTCAA ................................... TGCTGGAGCAATTCCAACTGGTTGGGCTGGTATGATATATA 2179133 35 100.0 ATGATATATA ................................... CCTACACT ========== ====== ====== ====== ========== =================================== 8 35 40 GTTTCCATCCCCGTGAGGGGTAAGAGATTAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.29%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [438,444] Score: 0/0.18 # # Final direction: F [0.37,0 Confidence: MEDIUM] >NC_003272 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 3516821 35 100.0 39 TAAGAGTTTG ................................... CTATCAATCGTTATTGCTGTTTTTTTAGCATTTTAGCGT 3516895 35 100.0 38 ATTTTAGCGT ................................... TTGCAGCTACTGCTGATGCAACTTGAATCTGTACTTGT 3516968 35 100.0 36 CTGTACTTGT ................................... CGATATGGTTCCGTTGTTGAGGGTTGCCCTGCGAGT 3517039 35 100.0 33 CCCTGCGAGT ................................... ATGAGTGAAGATAGCTTGATAAAAAAGCTCAGT 3517107 35 97.1 38 AAAGCTCAGT ........A.......................... TTGAGGCTAGATTATTTATTTTTGATGCTGTTTCCTGT 3517180 35 100.0 36 TGTTTCCTGT ................................... CCTTTTCTTGTTTTTCCCCACGCAGTATAAGCGAGT 3517251 35 100.0 ATAAGCGAGT ................................... CTTCGTTCCA ========== ====== ====== ====== ========== =================================== 7 35 36 TTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.20,-5.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [74,1067] Score: 0.18/0.18 # # Final direction: R [0.41,0.55 Confidence: LOW] >NC_003272 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================================== ====== 4362328 38 100.0 33 AGCTGTTAAT ...................................... ATCGCGCACAATATAAAGTTCTGAATATTCAAA 4362399 38 100.0 32 AATATTCAAA ...................................... TTAAATTTTGGATGCGATCGCCCCACCGCTTC 4362469 38 100.0 34 CCACCGCTTC ...................................... CGATGGATAAAGATACTAACTTTTTCTTCATCAG 4362541 38 97.4 TCTTCATCAG .....................................T GCCACTCTAT ========== ====== ====== ====== ========== ====================================== 4 38 33 CTTTCAACCCTCCCATTACTGGAAGGAGGGTTGCAACG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [9,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-12.00,-14.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [412,448] Score: 0/0.18 # # Final direction: F [0.41,0.37 Confidence: LOW] >NC_003272 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3840120 37 100.0 34 GTAACTAGCC ..................................... AAGCTTTTTGCGGGATGGGGCAAGTGTGGGTGAA 3840191 37 100.0 34 TGTGGGTGAA ..................................... CGGGCAATGCAGGAGTGCAACCCGACCAAGACCG 3840262 37 100.0 44 ACCAAGACCG ..................................... AAGTAAAGACCTATTTTACCTAATAACCAGTCTCTACCAGCTTG 3840343 37 100.0 36 TACCAGCTTG ..................................... AAGTAAAGACCCAACCGACGAAGCTCCTTTTTAAGA 3840416 37 100.0 36 CTTTTTAAGA ..................................... ATCATTGATTTCATACACAACTCGCACAGCTATAAG 3840489 37 100.0 33 CAGCTATAAG ..................................... TTGATTTCGGTTATTGCGTTATCCCTCCTAAAA 3840559 37 100.0 35 CCTCCTAAAA ..................................... CAACGACTAGGGCATGGAGTCTAGACCAGACGGTA 3840631 37 100.0 33 CCAGACGGTA ..................................... CTATTTCCTGAAACGATTTAGACAAGGATCTTT 3840701 37 100.0 AAGGATCTTT ..................................... AACATGAAAT ========== ====== ====== ====== ========== ===================================== 9 37 35 GTTGCAACACCATATAATCCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.16%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.30,-7.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [320,88] Score: 0.18/0.18 # # Final direction: F [4.68,0 Confidence: HIGH] >NC_003272 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3517542 37 100.0 34 AATGAGTCTG ..................................... ACACACATTATCAGCAAATCGTCTAATACAGTCA 3517613 37 100.0 36 AATACAGTCA ..................................... TTTAGCTTTGGATTGCGTGATAGAGAGGCTGAGGGT 3517686 37 100.0 34 GGCTGAGGGT ..................................... TGCTAGGGGGGTGGCTCACTTTGCCTCTTCTCTT 3517757 37 100.0 40 CTCTTCTCTT ..................................... CATAGCAAAAGTATTTAAGCTATTCTTTGCTAAGTAAACA 3517834 37 100.0 35 TAAGTAAACA ..................................... GTTTTTTGCGGGATGGGGGGGGTGGGTGAAGATTC 3517906 37 100.0 34 GTGAAGATTC ..................................... CCGCCAGCGATTAGATTGCTGGGGTTAGACATCA 3517977 37 100.0 34 TTAGACATCA ..................................... CATCTACAGCGATTGATGTGGCATCAGTAAGAGC 3518048 37 100.0 CAGTAAGAGC ..................................... TGCCTGAGTC ========== ====== ====== ====== ========== ===================================== 8 37 35 GTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.40,-7.50] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [795,268] Score: 0.18/0.18 # # Final direction: R [0.18,4.5 Confidence: HIGH] >NC_003272 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 445573 37 100.0 34 NNNNNNNNNN ..................................... TCCATGAACCTCTCCCCGCTGACCCGCGCGTCCC 445644 37 100.0 42 NNNNNNNNNN ..................................... AAAAAGCATCTAAAAGGCTGAAGGATTTACCAGAAGAGGCGA 445723 37 100.0 48 NNNNNNNNNN ..................................... CCACTCTCGTGCTGCATCGGAGCGGAAGCACAGGCCCGTGGGAGCTCG 445808 37 100.0 47 NNNNNNNNNN ..................................... GCGCGCTGCCGCGCCGCCGTGCGCGACAGGCCGCGGTGCCGCCGCAG 445892 37 100.0 43 NNNNNNNNNN ..................................... CCATTGGCAAAGGCGCGGCACCGGACACCCTGGCGACGGAATG 445972 37 100.0 44 NNNNNNNNNN ..................................... TAACGACTGCGATGATCTAGTCGCGGACTAAAAGTTTCCATCAA 446053 37 100.0 41 NNNNNNNNNN ..................................... TCGCCGGACAGGATGCGCACCTGCCATCCTCGCGCGCGCAG 446131 37 100.0 46 NNNNNNNNNN ..................................... TGGGAAGGATGTATTCCTAGAACTCCAGAAGAGAGAATAGAAGAAA 446214 37 100.0 39 NNNNNNNNNN ..................................... CTCCTCGGCCTGGGCGGGCGGCAGGATGCCTTCAAATGG 446290 37 100.0 36 NNNNNNNNNN ..................................... GTTGGCGGATCTGATGTTCGATGATCTGGGAATAGA 446363 37 100.0 44 NNNNNNNNNN ..................................... GTCTAGCTGAAGAGGTAGCCAAAGGTAATCCTGATGCTATATCT 446444 37 100.0 45 NNNNNNNNNN ..................................... GACCTGTATAATTCATATTCATTGTGATATCTTCCACTTTTACAA 446526 37 100.0 44 NNNNNNNNNN ..................................... GTGAAGTACCCGGCGAGCTGCGACGAGTGCGGCAGCTGCGCCGA 446607 37 100.0 37 NNNNNNNNNN ..................................... TATCAAACTTATATAAACACAGCAAAGCTATCCTATG 446681 37 100.0 45 NNNNNNNNNN ..................................... GTAATAGCAACTCGTATGTATCTTGAAGAAACTCACCCTTCTGAG 446763 37 100.0 42 NNNNNNNNNN ..................................... GTCCTGGGTGAACTCCAGGCCCAGGCCGAGGTGTTTTTTGGC 446842 37 100.0 47 NNNNNNNNNN ..................................... CTCGGAGGTGCAGTATGGCGGGATCAACGATCGCCGCGGCGTGGCTG 446926 37 100.0 41 NNNNNNNNNN ..................................... TCCATTCGCCCATACGTCGGTAGCACCAGGCAAACACAGAG 447004 37 100.0 35 NNNNNNNNNN ..................................... GTTTGTATGGACGGCCATACAGATCGCCGATGGAA 447076 37 100.0 35 NNNNNNNNNN ..................................... TTTATCCTTGCAATCCATACCTCCGTTTGCTGTAG 447148 37 100.0 40 NNNNNNNNNN ..................................... ACAAACTAATTTACCAAATTACTCCACAAGAAATTGTGGA 447225 37 100.0 33 NNNNNNNNNN ..................................... TGTCCCTATCCAAAATACTCCTTTTTTATAAGG 447295 37 100.0 37 NNNNNNNNNN ..................................... CGTAAGGCCAAGCTATGAAGTAGGCAAAGTTAAATTT 447369 37 100.0 42 NNNNNNNNNN ..................................... CTCAAGTGCTTTAGATGTTAATTTAGTTAGTCCACTAACGAT 447448 37 100.0 39 NNNNNNNNNN ..................................... TTGGCTGAGTCAGATCTAATTGCCAGTCCAATAACTTCA 447524 37 100.0 39 NNNNNNNNNN ..................................... ACAACACATTCACGGTGTTTCACAATCGCCACATAGTCA 447600 37 100.0 43 NNNNNNNNNN ..................................... ACCTCTTTTACAACATCTGCCCAGGCTTCGCGGAAACTGAAGA 447680 37 100.0 37 NNNNNNNNNN ..................................... CGTTCTTTTAAATGACGCAGAGTATTATCTACAATTA 447754 37 100.0 36 NNNNNNNNNN .................................GTG. GACTCTAGGCATAGCCAAGTCAGTAGGCAAGCCAAG 447827 37 100.0 1 NNNNNNNNNN C.........CA..AGGGGG..G..ATTA.AA..T.T NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 30 37 40 GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [10,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-9.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [335,385] Score: 0/0.18 # # Final direction: F [1.15,0 Confidence: HIGH] >NC_003364 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 95531 24 100.0 40 AGAGATCCCA ........................ TATTCAGAGTACTCTAGGCCGGTATACAGAGGGCCTAAAA 95595 24 100.0 44 GGGCCTAAAA ........................ AACACGTCAGCCAGCCCTCCCCATGTGGCCCTGGCTGTACACAG 95663 24 100.0 44 CTGTACACAG ........................ AAAATTTGTAAAGTTAGAGATAGCGAGCCGCGAATTGAGAGCGG 95731 24 100.0 49 TTGAGAGCGG ........................ TCTTCGGACAATGACGCGCTTAGAATGGGCGATTTATTCAACACGTACA 95804 24 100.0 47 AACACGTACA ........................ CAATTACTCTTAATTCAGAGTCTCCCTCACAGACGGCAAAATACTCA 95875 24 100.0 45 AAAATACTCA ........................ ATGTTAATTGAAGGGCCTGAGAACGCTGTTCAGTTCATTCTCAAT 95944 24 100.0 42 CATTCTCAAT ........................ CGTCTTTCTTCTTCGACACCTTGATGTTCAACGCCTCTACAG 96010 24 100.0 44 GCCTCTACAG ........................ GTTCTAAATATACCGACGGCCGCGACATTTACTAATTCTCTGAA 96078 24 100.0 46 ATTCTCTGAA ........................ TTATATACTTGGATCTGTACGTCCCCTTCCGTATATACACCCTGCC 96148 24 100.0 41 ACACCCTGCC ........................ TTGACAATTCAGCCCAAAGTGTAATCCGTTGATATGGTCGG 96213 24 100.0 47 ATATGGTCGG ........................ TCGGTAAATTAGTCAGTGAGAGCTTGTTAGGTATACTCCCCCCTTCC 96284 24 100.0 41 CCCCCCTTCC ........................ ATACTAATTGTGGCGGGGTTCAACCGTCAGCTGTTCCAGGT 96349 24 100.0 38 TGTTCCAGGT ........................ GTCCGCAGTCAACAGCCAAAAAGAGGGGGAAATAAACG 96411 24 100.0 40 GAAATAAACG ........................ CTTTATCAACGTAGACCCTTTTGTATATCAAGCTCTTTCC 96475 24 100.0 48 AGCTCTTTCC ........................ CAGGTAGAGGTGCGGTTCAACAACGTTGTTGGCCACGTGGACTTTTTT 96547 24 100.0 35 GGACTTTTTT ........................ TGGTTAATTCCAAGCTGAGGCAGGTCTGTGGACCC 96606 24 100.0 44 CTGTGGACCC ........................ CCCGCGGGCCCCGGCCGCGCCAGCGGCCACCTTGTTTTTGTTGT 96674 24 100.0 40 TTTTTGTTGT ........................ GCGCCGTCCATGCGAGCACGGGGAAGACTGCCGAGGGGTC 96738 24 100.0 43 CCGAGGGGTC ........................ ATTATCTTGACTAGCATCGCCACGGCGGCGAGCCCTGCGAGCT 96805 24 100.0 40 CCTGCGAGCT ........................ ATCCTAGGCATTGGGATGTACACTGCGATTTCCCCCTGCG 96869 24 100.0 44 TCCCCCTGCG ........................ AGAGTCCCTCCAGCTCCTCGAGGGCGGCGCACACTACGCACATG 96937 24 100.0 45 TACGCACATG ........................ TGCTGTCTGGAGTTTCGGTTGTGCTGGCAGCTGTCTTTGGCGCCT 97006 24 100.0 45 TTTGGCGCCT ........................ GCTGTATGGAGAGCCAATGCGCATGCGGCGTAAGACTGTATATAC 97075 24 100.0 42 CTGTATATAC ........................ GCAAAAGGCCTGCGGAATAGCCAGCCATCCCCCCGCCTGGCG 97141 24 100.0 44 CCGCCTGGCG ........................ CCTCAATTCGTCTACCATGGTCTCAGGGTCGATAATAAACTTCT 97209 24 100.0 43 ATAAACTTCT ........................ AGCTTTTTAAGGGCCTCATTTTTCTGGGCCTCAGTAATAAAGC 97276 24 100.0 41 GTAATAAAGC ........................ TATGCGTTGACCCGGGGCCCTACACAGCTCTCCTACTTACC 97341 24 100.0 45 CCTACTTACC ........................ ATGCGTATCATATACGCCGCACCCGCACAAACTAATAACCGCATT 97410 24 100.0 48 TAACCGCATT ........................ ATACGGTGTACTGCAACGGCCGCGATTTGACTGAATGTACAAAAACCG 97482 24 100.0 44 ACAAAAACCG ........................ TAGGTACGTATTTGAGGCGGTCTGCCCTCTGTGCGTGTCCAGTG 97550 24 100.0 42 GTGTCCAGTG ........................ GGGAGGCTCAGCAAACAGGACACACAGCTTCCTGGGTACCCG 97616 24 100.0 53 TGGGTACCCG ........................ GCCACCTGCTTAGCCGCCTCCTTCGCCCTCTCAGCCCGGCTGGCCTCCGACGG 97693 24 100.0 47 CCTCCGACGG ........................ CGGTGGCGGTGTACCAAATGTTCTACCTAGCCGGCGTCCAGCCGCCG 97764 24 100.0 45 CCAGCCGCCG ........................ ATTTTTCAGTTCTCCCGCCGAAGTGCTTGAGATACTCGCAACCGT 97833 24 100.0 45 TCGCAACCGT ........................ CTAGACGGAACTCTCACCAGCTCCTCCTCGGCGCGCTTGCGCGCC 97902 24 100.0 43 CTTGCGCGCC ........................ CTATTCCAGTGGCGAACTCGGCCGATATCCTAAGCCCTGCGAG 97969 24 100.0 49 GCCCTGCGAG ........................ CAGTTGGGACATGTTTGAGAAGGAGCTGGCCAGGGCTAGGAGTGCTGAG 98042 24 100.0 45 GAGTGCTGAG ........................ GTACGGATACAGCGCCACTGCTTGCAGCGGCGCGTCTACGCCGTT 98111 24 100.0 43 CTACGCCGTT ........................ TCGGCACTGGGATCGTCCTGGCCATAGTCGGCATTTTCATGGG 98178 24 100.0 46 TTTTCATGGG ........................ CGCGTTCTCGACACTGTGATGGATCTGATCCGCATGGATGCAGTGG 98248 24 100.0 41 GATGCAGTGG ........................ ACTCGTTGCCCAGAGAGCGCCTCTGGAACCTAGCCAGCACC 98313 24 100.0 43 AGCCAGCACC ........................ CACAATTGCGAAAAACGCGGCCCATTTGTATATAGCTCTCCCC 98380 24 100.0 44 AGCTCTCCCC ........................ CTAATTTCAGTGATAAGTCCATACGGCCCAATTTGACGACATAA 98448 24 100.0 42 GACGACATAA ........................ GCGAGGAGATTGCGCAGGAAGAGAACTCCTGCAAGCGCCGTT 98514 24 100.0 41 AAGCGCCGTT ........................ AACTATATAACAAAACTAGAGCCGCTGTTGAGGAAGGCTAA 98579 24 100.0 48 GGAAGGCTAA ........................ CTTGAACTCAACGTCTCCAAGCATTTGTTTATACACGAGCACGCGGGG 98651 24 100.0 45 GCACGCGGGG ........................ CGACGCCCGTATCGTCTACTTTCACGGCGGGCTTCTTGACAACGG 98720 24 100.0 43 TTGACAACGG ........................ CACTATTTTGAAGAGTGGCATGTCCATTTTGGCGTCTCTCTTT 98787 24 100.0 43 GTCTCTCTTT ........................ GTGCCCCCTCGTGGCCCGGTACCGGGCCCTGACGGCCGCGAGA 98854 24 100.0 43 GGCCGCGAGA ........................ CGCTGTCCCAGTTGCGGCGGGTTGGTGTTGGCGGTCGGCGGAA 98921 24 100.0 42 GTCGGCGGAA ........................ AGCCGCGGCGCCTCTTCACGAGCCCGATGGCGGCGAGCTGCC 98987 24 100.0 49 GCGAGCTGCC ........................ GAAAAACAAACCTTTTTCAAGAAACTACACCAGGCCCTATAGGGGCCAG 99060 24 100.0 42 TAGGGGCCAG ........................ CTGAGTTGACTGATAAGTTCATACGGCCCAATATGACGACAC 99126 24 100.0 43 ATGACGACAC ........................ CCTCAAAGCCGCTACAATAATCATCGAGGAGTATTCAAAAGAA 99193 24 100.0 46 TTCAAAAGAA ........................ TTGAGACTGTGGAGTTCGACATGGTGCGAACAGTGGCTGGTCTCGA 99263 24 100.0 42 CTGGTCTCGA ........................ TTTACCTATGTTGAAACTGATATGCGACTAGTGGACTGTATG 99329 24 100.0 40 GGACTGTATG ........................ TGTCCAATGAGCACATCTTCAATAGAGGCACCTCTATGCG 99393 24 100.0 44 CCTCTATGCG ........................ AATACGCCTTCCTCGACTCGTGGTCGGCGTAGCACATAATCGTC 99461 24 100.0 48 CATAATCGTC ........................ AAGATTTTAGTCATCTCCTCCGCCACCAGGAACACTATCCTTGCGGGG 99533 24 100.0 45 CCTTGCGGGG ........................ CGGGAGATTGGGCAGGTTCGCCGCCTATGGGGACAATATCATCTT 99602 24 100.0 47 ATATCATCTT ........................ TATCTAAATCAGCTTGTGCGTGGCTTGATAAGCAAAAACATGCTGGG 99673 24 100.0 45 ACATGCTGGG ........................ GTGACGTCTAGATTGGGCAGGAGTGTTTTAGCCCTCTCCCCCGCC 99742 24 100.0 46 CTCCCCCGCC ........................ TGTACTGCTGAGTGGCGTTTATCTTGACGGCGATGTAGGTCTCGGT 99812 24 100.0 46 AGGTCTCGGT ........................ AAGATCCTCAAGCCACACCACTCTGCCGCAGAGCGGCGTCCCTGGT 99882 24 100.0 43 CGTCCCTGGT ........................ TTCTGCCTTTCGGGCACCCTTCTCATTTGGCCCCGCCCGAAGC 99949 24 100.0 45 CGCCCGAAGC ........................ TCTGGCGAGAACTGTGTAACGACTACTACCACACAGCCACAGGGA 100018 24 100.0 43 GCCACAGGGA ........................ GAGGTATACTCGGCGGCGTATACATATATAGCCCTAGAGCGCT 100085 24 100.0 44 CTAGAGCGCT ........................ ACCATCGTGGAGTGCCAAGTTCGCACCCATCGAATTTACACTAG 100153 24 100.0 45 TTTACACTAG ........................ AAGCACGATTTGACAAAACAAGGTAAAGGGACTTGGGTTCGCCGT 100222 24 100.0 42 GGTTCGCCGT ........................ GTCCCTATACCCTGCTCCGTCCCAGTCTGTAGATGGGTCCTT 100288 24 100.0 47 ATGGGTCCTT ........................ CTGGCGAGATTGATGTTAGAGCACGCGGACGCCGTTATTGAAATACT 100359 24 100.0 45 TTGAAATACT ........................ GCGTTTTCATCAACAACAACGCCCCCGTACCACTCAAGAATAATA 100428 24 100.0 44 AAGAATAATA ........................ GTTCAATACGTTTGAAGTTGTCTGCAATTTCCTGAACGGCCCTA 100496 24 100.0 49 AACGGCCCTA ........................ TCTCTGTCTCGTACCTTGTAAATGTATGGCGTCTTCACAACCTGAATCT 100569 24 100.0 41 ACCTGAATCT ........................ GTAAAAACTATATTAACATGCCCAAACGTTATGACCGCCGT 100634 24 100.0 42 TGACCGCCGT ........................ TGGACATTTTCGCCTCTGCTTCGGGCCCATATGATTGGACGA 100700 24 100.0 46 GATTGGACGA ........................ GTGGCGTTGATCTCCGCCCCGAAGCCCATGCGCGCCCCCAGCTCGG 100770 24 100.0 46 CCCAGCTCGG ........................ ACACTGCAGTACCGTGCTTACATGGAATATAGAAGTAGCGCTTACC 100840 24 100.0 52 AGCGCTTACC ........................ TCCGGCACCCTCCCAGTGTGCCTCTTCATAAGGGCGATTAGGTAGATGGCCC 100916 24 100.0 42 TAGATGGCCC ........................ GATCTTCGCGCTGAACAGGCGCAACATGTTCTCGCTGAGTTC 100982 24 100.0 CGCTGAGTTC ........................ TTAGAAATAA ========== ====== ====== ====== ========== ======================== 81 24 44 GAATCTCAAAAAGAGGATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: F [matched GAATCTCAAAAAGAGGATTGAAAG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [339,65] Score: 0.18/0.18 # # Final direction: F [5.18,0 Confidence: HIGH] >NC_003413 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1064076 30 100.0 36 GAAGTCCAAA .............................. CGGAGGCTCTACCTAATCATCCTCTTGACACAACTC 1064142 30 100.0 37 GACACAACTC .............................. AGTTGACTTCACTACTACTTCTTCATCTATAATTCTA 1064209 30 100.0 37 TATAATTCTA .............................. GAAGAGAGGTTAGAATAACAGCTATTAGCGTTTCACA 1064276 30 100.0 35 GCGTTTCACA .............................. TTTGGAGATAGAGTTGCAGTAGAAATGATAAGGAA 1064341 30 100.0 37 TGATAAGGAA .............................. CACGGCCTACCTCGCTGAGATCCGGGTAGATGACAGC 1064408 30 100.0 AGATGACAGC .............................. AGGAGAATAA ========== ====== ====== ====== ========== ============================== 6 30 36 CTTTCAATTCTTTTGTAGTCTTATTGGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [65.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [10,1580] Score: 0.18/0.18 # # Final direction: R [0.27,5.18 Confidence: HIGH] >NC_003413 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1064565 30 100.0 37 CCGCAAAAAG .............................. CTTATAAGATTTTCCCATTTAAGCAGAGCTTAGATAA 1064632 30 100.0 45 GCTTAGATAA .............................. CTGACTTTAGAGACTTATACAATAACAACAACATATCTAAAGTCC 1064707 30 100.0 37 TCTAAAGTCC .............................. GCTACAACCCTCCCCTCGTAGTAGTACTTCCCATCGT 1064774 30 100.0 38 TTCCCATCGT .............................. CCTTATATGGGTGTTGTGAAGCAGGATAGAACTCTTGA 1064842 30 100.0 37 GAACTCTTGA .............................. GTCCCCGTAGTCCCTTAGAACTTTGTAGCCCTTCTTC 1064909 30 100.0 40 GCCCTTCTTC .............................. CTTCCAGCATTCTCTGCCTTCACGTAAACTTCTGTACCCT 1064979 30 100.0 37 TCTGTACCCT .............................. GCCAATTAAGTTCCTCCAGACAGATGAAGCCAGCAAA 1065046 30 100.0 37 AGCCAGCAAA .............................. CGAGGAAGGCTCCCTCTAAACCAGCCAAGGAGGTTAA 1065113 30 100.0 39 AGGAGGTTAA .............................. TGGCCACCCACTCCAATGCGCCTTTCACTTTTTGGCCAA 1065182 30 100.0 34 TTTTGGCCAA .............................. TATCAAAAGGTTAAGGCTTCTGTAAAAGAACTTA 1065246 30 100.0 37 AAAGAACTTA .............................. TTGCACTCACGTGTAACAAGTACCTGTACAATAGATA 1065313 30 100.0 37 ACAATAGATA .............................. CAATATTTTTTCAATGTCTGTCATTGTCCCACCTCCT 1065380 30 100.0 37 CCCACCTCCT .............................. TGTTTTCACTAATCGAAGACTTCGTAAGAGATAACGA 1065447 30 100.0 37 GAGATAACGA .............................. CTGAAGTGCTCTCAGCCGCAAGGACCGCATACTACAA 1065514 30 100.0 CATACTACAA .............................. AGGGGGCTTT ========== ====== ====== ====== ========== ============================== 15 30 37 CTTTCAATTCTTTTGTAGTCTTATTGGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [41.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [499,474] Score: 0/0.18 # # Final direction: R [0,5.27 Confidence: HIGH] >NC_003413 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 27091 30 100.0 48 NNNNNNNNNN .............................. TTATATGATTCATTTCTTGTCTTAAGCAATCTGATCTGACCAGAGCTG 27169 30 100.0 36 NNNNNNNNNN .............................. TAAAGTTTATAAACTTTTCGTGTATAGAAAAGTGCA 27235 30 100.0 38 NNNNNNNNNN .............................. CCGGTTCTGCACCCGAAACTTTCATACCAAAATACTCC 27303 30 100.0 36 NNNNNNNNNN .............................. GGTCATACTTTACTGCTACAACCCGCTCTGGGTCGA 27369 30 100.0 40 NNNNNNNNNN .............................. CTCTTATGCTGAATTTTTCTGAATCTTCGGATACTGGCAA 27439 30 100.0 37 NNNNNNNNNN .............................. GCGTTAATGAACAATAAGCCTGACACGAACATAAACA 27506 30 100.0 38 NNNNNNNNNN .............................. GGAAATGTGCGTAAAGGTTTTCTTCCCAGGCTTTCGCT 27574 30 100.0 36 NNNNNNNNNN .............................. GTAGTGAGGCGTTGAACTTGACCCACCACCAGCCCT 27640 30 100.0 39 NNNNNNNNNN .............................. CACTACTGTCCTCTCGACAATTGACGTTATTACAGTCGA 27709 30 100.0 38 NNNNNNNNNN .............................. TCAAAACTTTACAAAAGTAAAGAAAAAATTGAACGGGT 27777 30 100.0 37 NNNNNNNNNN .............................. GCGTGCCGTGTGTTTTTATAACTGCTCTAATGTGTCT 27844 30 100.0 37 NNNNNNNNNN .............................. TTGCTGCATATCCAGTGTGGTTGGTCTTGAGGTATAT 27911 30 100.0 37 NNNNNNNNNN .............................. AGACATTAGGAGACAGTATAGGCCAGAACTTGCCCAG 27978 30 100.0 36 NNNNNNNNNN .............................. TTAGCAAATTGCCGATTACTGCACATAAAAAAAATA 28044 30 100.0 37 NNNNNNNNNN .............................. TTTTTTTGCCCGTTTTTTCTTTTCCCTCACCGCTTTT 28111 30 100.0 38 NNNNNNNNNN .............................. AGAATCTATAAGGGATTGAAAGGTCAAGGGTATACTAT 28179 30 100.0 37 NNNNNNNNNN .............................. ACGAACCTCTTTGATCGTAAAAATTTCAATCATCTCT 28246 30 100.0 39 NNNNNNNNNN .............................. CTCCTATGCGGTCATTAGACCCCCGCCGGGGGCCGGCAG 28315 30 100.0 38 NNNNNNNNNN .............................. TGAGTTGTTTAGTCTAACTCTTACACCATCAGAAATAA 28383 30 100.0 38 NNNNNNNNNN .............................. ACAAATTAGTCAGAACCCCCCGCAATGAAAAATTTTTG 28451 30 100.0 35 NNNNNNNNNN .............................. GACAGCGTGGACACGGTGAACGGGCTCTGGAAGGA 28516 30 100.0 37 NNNNNNNNNN .............................. TGCGCTATTCTCGGGTCAAGCCTCCCAGCCTGAACCT 28583 30 100.0 36 NNNNNNNNNN .............................. AGCGGTCTGAGCCTGAGCCGTCGCTCCCTCAAGCGA 28649 30 100.0 38 NNNNNNNNNN .............................. TTATTCCTGATAGAACCTTTGCCACTGTTGAATTCCAG 28717 30 100.0 37 NNNNNNNNNN .............................. CTGTATTTCTTGCGGTAATACCCCCCAAATAGTTCCT 28784 30 100.0 36 NNNNNNNNNN .............................. CATACTTGCGGATACGGATCCAGTCAAAACTTGACT 28850 30 100.0 37 NNNNNNNNNN .............................. AACACTTTCCTTAACTCTGGGTCGTCTATGTTTTTGA 28917 30 100.0 38 NNNNNNNNNN ...................C.......... CTGGAGCGTTGGGCACAAGCATGGGGATGATTGTGGAG 28985 30 100.0 37 NNNNNNNNNN .............................. AGGGTTGGGTTCTCAATGGTGTATGGAGCGTTTCTTA 29052 30 100.0 38 NNNNNNNNNN .............................. CTATTAAACGCAATCCGCTCAGCCAAACATCACCCCTC 29120 30 100.0 37 NNNNNNNNNN .............................. TGATGGAGTAGATGAAATTCCTGGGGTGTCTTGGGAA 29187 30 100.0 37 NNNNNNNNNN .............................. GGTCTCATCTCGTGCAGCCTTTCTTCCCTCAACCCAC 29254 30 100.0 38 NNNNNNNNNN .............................. GGAGCTAGAATTGATGAAGGAGGTTGCTCAAGTAGTGC 29322 30 100.0 37 NNNNNNNNNN .............................. CACAAAGTTCTTCCATTCTACTAGTCCAGCTCTCTGT 29389 30 100.0 37 NNNNNNNNNN .............................. CTGTCTCCCTAAGAGCATACAATCCTCTGTACTCTAT 29456 30 100.0 38 NNNNNNNNNN .............................. GGAGTAGAAATGCCCAAATTCCCCTTAGGGACAAGATG 29524 30 100.0 40 NNNNNNNNNN .............................. CACCACCACGATGAAGGTACCGTTCTCAACGTCTACTTCA 29594 30 100.0 37 NNNNNNNNNN .............................. AATCAACCCCAAACCTTGCAAGGGTTGCCTCAACTGG 29661 30 100.0 38 NNNNNNNNNN .............................. AACTTCCTCTCCAACTCCCTCACCTCCTCATCCGACAA 29729 30 100.0 49 NNNNNNNNNN .............................. ACTGGATTGAGAGCAACTTGTCGAATTATGTCGTCAAGCTCGTCATTGA 29808 30 100.0 42 NNNNNNNNNN .............................. GATAATGCTAGGTTATTATATAGGTATAAGGCAAGGTGTCCA 29880 30 100.0 42 NNNNNNNNNN .............................. GTTTCCAAGCCATTCCAACCACCCCACATGTGTTGTTTTCAT 29952 30 100.0 40 NNNNNNNNNN .............................. TTTGTGATAGTGTTCTTTGCAACGAAGAGCTTGCTGGTCA 30022 30 100.0 37 NNNNNNNNNN .............................. GAACATTGTCCCCTCCTCCAAACAGTTTTTCATGTCT 30089 30 100.0 37 NNNNNNNNNN .............................. TAGAGTGCGGCGATTATTTTGGTTCTCAGCGTTGCTC 30156 30 100.0 37 NNNNNNNNNN .............................. TCAGCAGTTACGTCGTTCTTCCAGGTGAGAATACCAT 30223 30 100.0 49 NNNNNNNNNN .............................. AATAATCAGCAAAATCACGGGACATAGAAGGCTAGACTACATCCTACAC 30302 30 100.0 39 NNNNNNNNNN .............................. AGAGAATCTGGTAAGGAGACAGTAAACTGATCATGCAAT 30371 30 100.0 44 NNNNNNNNNN .............................. GAGTTTCCAAGATGAGTGCCCCGAGCCGGGGGCTCGGGGCATGG 30445 30 100.0 46 NNNNNNNNNN T.C.A.TA.GA................... AGAGGCCCCCACATCTGATTTAATCTGAGATGGAACTTCCACAATT 30521 30 100.0 38 NNNNNNNNNN .............................. ACGGTTGGCCTTGATACACTGGCCAAAAGAAATCTACG 30589 30 100.0 1 NNNNNNNNNN .............C....ATA..A.TG..A NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 52 30 38 GTTCCAATAAGACTAAAATAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:73.33%AT] # Reference repeat match suggestion: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [56.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [454,195] Score: 0.18/0.18 # # Final direction: F [5.59,0.27 Confidence: HIGH] >NC_003413 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 260714 30 100.0 39 AAAGCCCCCT .............................. TGTTCATCGCACTTCTTCTTCTGACTCTGCTCCACTTAG 260783 30 100.0 37 CTCCACTTAG .............................. GCGTTAATGAACAATAAGCCTGACACGAACATAAACA 260850 30 100.0 37 AACATAAACA .............................. TTTCAATAAGGAGTTTCAAATGGCTCGATGGAATTAT 260917 30 100.0 42 ATGGAATTAT .............................. AGAACCTCCGCAATCTCCTTTGGAGAAAGGCCCTTCTTGAGA 260989 30 100.0 38 CTTCTTGAGA .............................. CTTCTTCGAAGTCGTAGTTTAGTGTGTCAAGATATTCT 261057 30 100.0 37 AAGATATTCT .............................. TTCTAGAAGTTCTCTTGCGAGAGCCAAGAGCGCGGCT 261124 30 100.0 37 GAGCGCGGCT .............................. GTGTACTTAAGAATTTCTTTCATAACTTTTCTGAAGA 261191 30 100.0 38 TTTCTGAAGA .............................. ACATAAGAGACGGAGAGCTTGTTATCTGGAAAGCAAAT 261259 30 100.0 43 GAAAGCAAAT .............................. AGTTATAACAAACCAGCATGACCCGCTCTCGGCTGAGTGGCAG 261332 30 100.0 37 TGAGTGGCAG .............................. CTACCATGGCCATCACCAATAATTAATTGTAAGTTAG 261399 30 100.0 36 TGTAAGTTAG .............................. ATTTGCTGACAAGCCATCGCAAAATTCTTCTGTTTT 261465 30 100.0 37 CTTCTGTTTT .............................. AACTCCACGACAGCATAAGGGACATTTACCATCGTAT 261532 30 100.0 ACCATCGTAT .............................. TTTTTGTGCT ========== ====== ====== ====== ========== ============================== 13 30 38 GTTCCAATAAGACTACAAAAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [476,769] Score: 0/0.18 # # Final direction: F [5,0 Confidence: HIGH] >NC_003413 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 261600 30 100.0 49 GGTAAAACTA .............................. GGGGCTGCGGGCCGGCTCACACCCCGAGCTCCCGGCTCGGGGTGCTCAT 261679 30 100.0 37 GGGTGCTCAT .............................. TCCAACATGGTTAACTTCCATCCTCTTAAAAGGAACT 261746 30 100.0 37 AAAAGGAACT .............................. GTAAGGTATTCTTCATAGACACCGCTCTGCATAACGT 261813 30 100.0 37 TGCATAACGT .............................. TTGAGGCTGGAGAGGGCTTCTTTGTTACTACTTGCGT 261880 30 100.0 37 CTACTTGCGT .............................. TTAACTCGTTTAGTTTTATGTTCATGTTCCACACTAA 261947 30 100.0 39 TCCACACTAA .............................. CTAATTTACGCTTTAGCTCGTGATCAACCCTAATCCCTA 262016 30 100.0 CTAATCCCTA .............................. ACACTCATGT ========== ====== ====== ====== ========== ============================== 7 30 39 GTTCCAATAAGACTACAAAAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1362,285] Score: 0.18/0.18 # # Final direction: F [5.18,0 Confidence: HIGH] >NC_003272 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 5646455 36 100.0 36 TCGCTATCGG .................................... GAGAGACTGGAAACAATTTCTATAGCGATGTCGGAT 5646527 36 100.0 37 GATGTCGGAT .................................... TCAATCATCTTTGCATTATATCCTGAAATTACAAGAT 5646600 36 100.0 32 ATTACAAGAT .................................... CTCCCTTAGCCACTCTAGGATTTGTGACTGTT 5646668 36 100.0 35 TGTGACTGTT .................................... ATGATTATCGAGGAATCTCGAAAATAGGACGTCGA 5646739 36 100.0 39 AGGACGTCGA .................................... AAGCGACCATCGCTTTTTGCACGAACAGCAGATGGAACG 5646814 36 100.0 37 AGATGGAACG .................................... TCCTGCTCCAAGCATTAGTCCTTCGGAGATTAAAAAC 5646887 36 100.0 37 GATTAAAAAC .................................... TAACTACTGCAAGCGTTGTGCAAGCAGCAATACCTGC 5646960 36 100.0 45 CAATACCTGC .................................... TGCACATTGATATAAACGAAGCTAAAAAAGCCTCTACCAATATAA 5647041 36 100.0 33 ACCAATATAA .................................... TCTTGCATACAAAGCTGCATTTCTAGATGACAA 5647110 36 100.0 TAGATGACAA .................................... AGTTCACTTC ========== ====== ====== ====== ========== ==================================== 10 36 36 GTTTCCATCCCCTTTCGGGGTGATGTGATCGGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,11] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.70,-8.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [663,381] Score: 0/0.18 # # Final direction: NA [0.37,0.37 Confidence: NA] >NC_003413 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 312405 30 100.0 37 AAAGCCCCCT .............................. GAATGTTGCTCAATGCAAAGGGCTCACCGCTGCTGGT 312472 30 100.0 35 CGCTGCTGGT .............................. TTGAGTTGAAGCGCCACTCTTTGAAGCCTATCAGA 312537 30 100.0 37 GCCTATCAGA .............................. GCTTCAGGTCTTCAATATTCAATCCCGGTCCCTTTCA 312604 30 100.0 37 GTCCCTTTCA .............................. TCGGGTCCCTTGGAGTTCCGAACGGGCTCCCGAGGCT 312671 30 100.0 38 TCCCGAGGCT .............................. TTGATTCCCTTATAGATGTTCGTTTTCCACACAACTAA 312739 30 100.0 39 ACACAACTAA .............................. CTGTATATCCTTTCGTTTGTCTTCCACACTTTCAACTCT 312808 30 100.0 38 TTTCAACTCT .............................. TATGTTCGTTCTCGTTCACTGTTATTCTCTTTTGTTCA 312876 30 100.0 37 CTTTTGTTCA .............................. AAAAACTAAAAAAAGAAGAGGTGGTGGTGAAGAATGT 312943 30 100.0 38 TGAAGAATGT .............................. CTTTTCCTGCTCCTGCTTAACAAAAGAATTGTTGGCTT 313011 30 100.0 36 TTGTTGGCTT .............................. GGAACCACAGACCCAATCGCAGTAATTTGGGTTGAC 313077 30 100.0 37 TTGGGTTGAC .............................. TCATGTATTTTTCTTCTCCCAAATCCAGGGGCTCCCA 313144 30 100.0 37 GGGGCTCCCA .............................. TCTCAATTGGGGAGTTGCTTTAATGGCTTTTGGAGTG 313211 30 100.0 39 TTTTGGAGTG .............................. AAGATAATCGCTCAACAGTTTCAATGCTATACTTGTCAA 313280 30 100.0 38 TACTTGTCAA .............................. TAATCTCAATAACTTTGGCTTCTTTTCTGTGTTTGTTT 313348 30 100.0 47 GTGTTTGTTT .............................. GATTTCAGAGAACAACGGTGAATTTAAGAATTTCCTGACTTTCAATT 313425 30 100.0 39 ACTTTCAATT .............................. TTGCTGATTACGAAGGCATATCCTTCAATTGTTGCTCGT 313494 30 100.0 39 TGTTGCTCGT .............................. ATAGACTTCCCTTGTGTACTTTAGTAGTTCTGCAAGTAA 313563 30 100.0 43 CTGCAAGTAA .............................. GAAGGATAGCAGGATCTAATGTAATTCTCGCGACATCTTTAAA 313636 30 100.0 39 CATCTTTAAA .............................. GATGAGGAGTGAAAGTTCTTGCAAAGCCCTTTCCAAAAG 313705 30 100.0 36 TTTCCAAAAG .............................. AGTATCGCTACTGTTTTCATGCACCACTGCACCCAT 313771 30 96.7 36 CTGCACCCAT ..............G............... AATCAATCCGAGAATCGAATTTTCCTATACGCTTTT 313837 30 100.0 35 ATACGCTTTT .............................. TTTGTTTTTGCTCCTGTGTCTTGTGGTGATAAAAT 313902 30 96.7 GTGATAAAAT ...A.......................... CAAAAGAATT ========== ====== ====== ====== ========== ============================== 23 30 38 GTTCCAATAAGACTACAAAAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [509,265] Score: 0/0.18 # # Final direction: F [5.41,0.27 Confidence: HIGH] >NC_003272 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 5654133 37 100.0 34 GAGCCGAGCG ..................................... TTTTTCCTGAGTTACCTGTACCCGCTTGATATAC 5654204 37 100.0 34 CTTGATATAC ..................................... CTTCTAGCCCTTCTGCTAGTGCTATCCAGTTATT 5654275 37 100.0 36 TCCAGTTATT ..................................... CTATTAGGAATCCTAGCAGCGCTGCCACCACTTAAA 5654348 37 97.3 ACCACTTAAA ................................A.... GACTCTGGTG ========== ====== ====== ====== ========== ===================================== 4 37 34 GTTAAAACCCTCTAAAATCCCTATCAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.16%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.50,-7.40] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [346,216] Score: 0/0.18 # # Final direction: F [4.91,0 Confidence: HIGH] >NC_003413 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 623119 30 100.0 38 TGAAAGCTTT .............................. AGGTGGTTAGACGGGTGGTTTGCTGGAGACTTAGGACT 623187 30 100.0 38 ACTTAGGACT .............................. GCAGTCCAGTACAAAGGCACAATTCTCGGTGGAATACT 623255 30 100.0 38 GTGGAATACT .............................. CTCCTTACAATAAGCTCACCGTTGCTGATGTTGTCGGC 623323 30 100.0 39 TGTTGTCGGC .............................. TTGTAAGGAGACCAAGACCACAGGTTTATAGGGGACTCA 623392 30 100.0 35 AGGGGACTCA .............................. ATGGTGATTATGGCGACACTATTGAGTGGTTCGTT 623457 30 100.0 35 GTGGTTCGTT .............................. AGCTGAGAAGGTGTCGAGGGATGTGAAGGCTAGGT 623522 30 100.0 37 AAGGCTAGGT .............................. GCGGGAGCAAGGTGTTGCAAACCTTGATAGAGTTCCA 623589 30 100.0 38 TAGAGTTCCA .............................. TGGGCATTGATTTCGACATTGCAAAAATTTTTCATTGC 623657 30 100.0 42 TTTTCATTGC .............................. TCGGAGTTACCGATTGCTGAAGTAAATGAGAGATTCAAGATA 623729 30 100.0 37 ATTCAAGATA .............................. GTTGTTAATGTATTCGTTGAGGCAGGGAAGTATAAGG 623796 30 100.0 38 AAGTATAAGG .............................. GACTTTTGTATTACAAAATCAGCGTAGTTTACTATCAG 623864 30 100.0 36 TTACTATCAG .............................. ACAAACACAGAAAAGAAGCCAAAGTTATTGAGATTA 623930 30 100.0 38 ATTGAGATTA .............................. TAGCTAATGTCCATGAGAGTGTGTGAAAAGCTAGTGAA 623998 30 100.0 38 AGCTAGTGAA .............................. GCCAAGCTAGTTATTGATGTGTTGCATACCGTATACAC 624066 30 100.0 38 CCGTATACAC .............................. GCCAAGCTAGTTATTGATGTGTTGCATACCGTATACAC 624134 30 100.0 38 CCGTATACAC .............................. TATTCATGGCATGTGGCAATGTTTCTTGATAGGGCACT 624202 30 100.0 40 ATAGGGCACT .............................. CTTTCTTTGCATCTTTTGTATATCCCTTAGACCCAAATCT 624272 30 100.0 36 ACCCAAATCT .............................. TTAATTCTTGGGAAAAACAGGGATTATATTATCCAC 624338 30 100.0 38 TATTATCCAC .............................. AGGAACGGTCTCCAAGAGGACTTGGCGAATTACGTGAC 624406 30 100.0 37 ATTACGTGAC .............................. TATTTTGTCCTACTTTGTATGACAATGTCTTATGTGG 624473 30 100.0 38 TCTTATGTGG .............................. ATATAATAGGTATGTAGATAAATCACCCTCTGAGAAGG 624541 30 100.0 38 TCTGAGAAGG .............................. CGAATTCGATAGATTCGAGAAGCTTGTAAGGGTAGAGA 624609 30 100.0 37 AGGGTAGAGA .............................. CTATTATATATACAGATGTCTTGCATTATGATGCTTA 624676 30 100.0 37 ATGATGCTTA .............................. CGCTATGATATGCTGACGGATGAGGAGTATGCTGAGA 624743 30 100.0 38 TATGCTGAGA .............................. TGAAAATAGTGGACGTCATCCCTCCAAGCCAAGTGCCT 624811 30 100.0 37 CCAAGTGCCT .............................. TATGACTCTGACACAGGTACTAAAATCGAGGAGTTCC 624878 30 100.0 37 GAGGAGTTCC .............................. CACAAGCACTAGTCCTGCTAGCGTTTTCAGGAGTGGT 624945 30 100.0 36 CAGGAGTGGT .............................. ACGAGCATTAGGACTGTGTTATTGTTTTGATCTTTT 625011 30 100.0 37 TTGATCTTTT .............................. GTGAGCGCCCTCAAGTACTACGTGAACCATTCCCCTT 625078 30 100.0 39 CATTCCCCTT .............................. CTCAATGCAAAGGGCTCACCGCTGCTGGTGAGTATGGTC 625147 30 100.0 GAGTATGGTC .............................. AGGGGGCTTT ========== ====== ====== ====== ========== ============================== 31 30 37 CTTTCAATTCTATTTTGGTCTTATTGTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:73.33%AT] # Reference repeat match suggestion: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [68.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [122,539] Score: 0.18/0.18 # # Final direction: R [0.27,5.18 Confidence: HIGH] >NC_003413 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 695937 30 100.0 37 NNNNNNNNNN .............................. AGTGAAGAATTTGACGTACAAATGTCCTTAGTGGAAC 696004 30 100.0 37 NNNNNNNNNN .............................. TGATGTAGATCTCTGTACCTTTCGGGACCTGTAGGTC 696071 30 100.0 39 NNNNNNNNNN .............................. CAGTTCTACTTTGATAAGACTGTGGTGGTTAATGGTAAA 696140 30 100.0 37 NNNNNNNNNN .............................. CTCTTATGGTGAAGCTTTCGACATTTTCTTTGGATGT 696207 30 100.0 37 NNNNNNNNNN .............................. CGTCTTCTCTGAGATTCTTGGCTCGTTCTAGAGCCAT 696274 30 100.0 37 NNNNNNNNNN .............................. GAGAGTATCAGGAGCTTTCTGACCTCCTTATACAGCT 696341 30 100.0 38 NNNNNNNNNN .............................. GACAAAGAACTCCCTAGCGTCCCTCCCCGTGTACTTGA 696409 30 100.0 37 NNNNNNNNNN .............................. CCACACTTCTATCTCAGCACCCCCAAACGTGAAACTG 696476 30 100.0 36 NNNNNNNNNN .............................. TTCTGCCGTCCCTTTTCTCGACGAACCTCATACCGA 696542 30 100.0 39 NNNNNNNNNN .............................. TTGAGGAGATGCTTACTGCGGTTAAAAAGGACATTGCAG 696611 30 100.0 37 NNNNNNNNNN .............................. GGTGCTTGAGCTCGCTAGTGCCCTCCTCCTGGGCTAT 696678 30 100.0 38 NNNNNNNNNN .............................. TAATGCTGTACAGGATTGACAAGGAGGCTTACGCTTCT 696746 30 100.0 37 NNNNNNNNNN .............................. TACTATAGGCGGAACTCCCTGCAATGAAAAATTTTTG 696813 30 100.0 37 NNNNNNNNNN .............................. GCACCTTCTTCACCATCGCCGTCTGGATTGCTGGTAG 696880 30 100.0 37 NNNNNNNNNN .............................. TGTTTTCGAATATTGTTACTTCTTGTGTATCTCTGAA 696947 30 100.0 37 NNNNNNNNNN .............................. ATTCACTGGGTTCTTCAGAAAGTTCATAAATTCACCG 697014 30 100.0 34 NNNNNNNNNN .............................. CCTTCTTCTTTTTAAATTTTTTAATTTTCATTAA 697078 30 100.0 41 NNNNNNNNNN .............................. TGATCTAGGCGTCGGGTAATTCTGTAAGGTCTCTGGCTCAT 697149 30 100.0 43 NNNNNNNNNN .............................. ATGACTATCAGGATGATAATCGTTTTTTTATGCTCGCTTACAA 697222 30 100.0 37 NNNNNNNNNN .............................. ACAGGCAATTAGAAACTCTTTCAAAAACGCAGTTCAG 697289 30 100.0 37 NNNNNNNNNN .............................. TAGTGTAACAACATCATATGGAAAGTCTCCCACGTTG 697356 30 100.0 38 NNNNNNNNNN .............................. GGGTTTACTCCGAACGGTGTTCTGCTAACTGATATAGT 697424 30 100.0 36 NNNNNNNNNN .............................. ACTTAGCCACCTCCGAGATGTTTTCGTAATAGTTAT 697490 30 100.0 37 NNNNNNNNNN .............................. TTGTAGGCTCGTGGACTTGGCTTCCACACAACTAATT 697557 30 100.0 37 NNNNNNNNNN .............................. CTTCTTCTCTTACAAAGTCTTCAATGATAGTAAATAT 697624 30 100.0 38 NNNNNNNNNN .............................. TGGGGTCTCGTCGCAATCGGTGCAGTATTCCTAAGCCT 697692 30 100.0 36 NNNNNNNNNN .............................. GCAATTGGGCTTTTTGTAGCTGGAATCTTGGGTGAT 697758 30 100.0 36 NNNNNNNNNN .............................. AAAGATTCTGATTCCCGAAAGGCTTTTTCCGACACC 697824 30 100.0 37 NNNNNNNNNN .............................. TCACCATTACCTCCTAATCCAATCATCTAACATTGAA 697891 30 100.0 38 NNNNNNNNNN .............................. TAACTCTAATGTTTCATCGACTAACATGTCAATTTCAT 697959 30 100.0 38 NNNNNNNNNN .............................. TTGGATTTGCTACTCTCACGTATAGGGTCCCTACCTCT 698027 30 100.0 35 NNNNNNNNNN .............................. TGATATAGTCGTCTGCTCCTGATACCCAATATATG 698092 30 100.0 37 NNNNNNNNNN .............................. AGGAGGCTCTAGATGAGCTAATCAGCGCAGAAGGTGG 698159 30 100.0 35 NNNNNNNNNN .............................. ACCACCCCTGGGAAAGGCCTTATGGTACTACCTAA 698224 30 100.0 35 NNNNNNNNNN .............................. CTTAAAAATACTACCCTCAACAATCAATATTGCAA 698289 30 100.0 36 NNNNNNNNNN .............................. AACCTCCCTAAGCCTGTCCTTCCAAGTGAACTTATA 698355 30 100.0 37 NNNNNNNNNN .............................. CTCTCTTACTTCTATAAGACTGAAACTTCACACCTAA 698422 30 100.0 38 NNNNNNNNNN .............................. TAACGCTTATTTCACCCTGCTTAACACTCTTAACCCCA 698490 30 100.0 37 NNNNNNNNNN .............................. ACATCCCTACATAATAATACGCCACTTGTCCAAAAAC 698557 30 100.0 36 NNNNNNNNNN .............................. ATCTCCATCATACCAATGCTGTGCAAAATCAATCTT 698623 30 100.0 40 NNNNNNNNNN .............................. TTGAAAAGGTTGGGTGATAGGGTTAAGGAGGAGTTAGTGA 698693 30 100.0 39 NNNNNNNNNN .............................. TAAACTTAAGCTGGGATGGGCTATATACAAAGACAGACA 698762 30 100.0 38 NNNNNNNNNN .............................. GAGATAGAGCTGGTTTTACGTTATGGCAAAATCTTAGA 698830 30 100.0 36 NNNNNNNNNN .............................. TGGTTCATACAATTCTGGAAGGTTGTAGAAACCAAC 698896 30 100.0 37 NNNNNNNNNN ...C.......................... GATGCCCAAACCTGAATATACCCCGCACTAACTAAGT 698963 30 100.0 1 NNNNNNNNNN ...C...........C..A........... NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 46 30 37 GTTACAATAAGACTAAAATAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.67%AT] # Reference repeat match suggestion: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [60.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [62,88] Score: 0/0.18 # # Final direction: F [5.68,0 Confidence: HIGH] >NC_003364 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 1898967 25 100.0 41 CAAAAGATGT ......................... ATTATGAGGCCCTTAATTCTCGCCGGGCCTCCAAAGGCGGG 1899033 25 100.0 40 CAAAGGCGGG ......................... ACAGTGCTCTATATCGAGGGACGCGGTAAACTGAAGTTAA 1899098 25 100.0 41 CTGAAGTTAA ......................... TACTCCTATTGAATTTCTGCCGAGCAGTTTTGCCTCTATGA 1899164 25 100.0 41 GCCTCTATGA ......................... ATATTTATCTTGTTTGCGCTCGCATGAGTAGAGTGGAAACT 1899230 25 100.0 40 AGTGGAAACT ......................... TGGTGTAGATAACAGAGAATTATTAGATACGCTCTTTGTT 1899295 25 100.0 41 GCTCTTTGTT ......................... ATATCAATGGCAGGAGGCCGAGCAACATGACTCCTATCGCC 1899361 25 100.0 41 TCCTATCGCC ......................... ATCAGGCCCGACAGACTCATAGTCGTAACGGACAAATACCT 1899427 25 100.0 43 ACAAATACCT ......................... ATAGTGGTGGAAAAGTGATTGTAGTCACTTGGGACGCAGAAGT 1899495 25 100.0 39 ACGCAGAAGT ......................... CTTATTCACTGATATCCGCTTAAGTTACCACGAGCCAGC 1899559 25 100.0 46 ACGAGCCAGC ......................... CAAGCTGGCCGGCAGGCACCCTGCGGCCTTGGATAGAATTATACAA 1899630 25 100.0 AATTATACAA ......................... GGCTTGCGTT ========== ====== ====== ====== ========== ========================= 11 25 41 GTTTCAACTATCTTTTGATTTCTGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [398,254] Score: 0/0.18 # # Final direction: NA [0,0 Confidence: NA] >NC_003364 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 39813 25 96.0 43 AAAAGGGATT .........-............... TGGAAGAACTGCAGCGGATATACGGCCCAGTCGTTAATGAGGC 39881 25 96.0 41 TTAATGAGGC .....................T... CTCATTAATAAAATTGATGATACTTTCAGCCATAAGAGAAA 39947 25 100.0 45 ATAAGAGAAA ......................... ACATGCGTATGGCGGTAGGCGACGTGTAGAATATAGTGAAAATGG 40017 25 100.0 40 GTGAAAATGG ......................... GGGGTAAGTGGTTTGACAAGGAGCAAGCAGTAGAACTGCT 40082 25 100.0 40 TAGAACTGCT ......................... GGTCGGCCCAATTACTGAACAAATAGTCTGTATGGTTTAA 40147 25 100.0 43 TATGGTTTAA ......................... GTAATTAAATATTAATTACGACTTGTGCACACACATGGAGAGA 40215 25 100.0 40 CATGGAGAGA ......................... GGCGTTGGCAACGCTGGACAGTACGGTGGCGGTGTTGTCA 40280 25 100.0 43 GGTGTTGTCA ......................... ACACGGCATTTCCAACACCGAGGGTGTGGGAGTGGATAGCCGT 40348 25 100.0 40 GGATAGCCGT ......................... ATATTTGGAAAAATCGATAAGGAAAGACTATTGGAACTTG 40413 25 100.0 44 TTGGAACTTG ......................... AAGGTCTCAGACCGTCATTTGATGCTTTGGTTAGTTTTGAAGCC 40482 25 100.0 44 TTTTGAAGCC ......................... CAGGAGGGTTGTGGGGTGCACATGACGTACACGTCTGTGATGCT 40551 25 100.0 44 CTGTGATGCT ......................... TGGAGAATTGGCTTCTTAGCTGTTTCTACGCAGCGCCTTTCTGG 40620 25 100.0 38 GCCTTTCTGG ......................... ACCACTGCTAGAACAATGGAAAAATGGTGGCAAGTTAA 40683 25 100.0 45 GGCAAGTTAA ......................... GCAAGCGGAAAGGGACACGGTATACGCCGGCTGTACCGAGGTCAT 40753 25 100.0 CCGAGGTCAT ......................... GGCTTGCGTG ========== ====== ====== ====== ========== ========================= 15 25 42 GTTTCAACTATCTTTTGATTTCTGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [527,229] Score: 0.18/0.18 # # Final direction: R [0.18,0.68 Confidence: MEDIUM] >NC_003364 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 45503 25 100.0 43 CACGCAAGCC ......................... GGTGAATATACAGACAATATATCGAACGATGGCCGCAATCCAA 45571 25 100.0 43 CGCAATCCAA ......................... TGTGAATACGCTCAGCTTGGCGTGCATCAGTCTCTTCAGAGAT 45639 25 100.0 43 CTTCAGAGAT ......................... CTGAAAAAGTTCCTGAACGCCGGGTTTTTCGTCGGGACCTTCC 45707 25 100.0 43 GGGACCTTCC ......................... AACACTTTCAACCTAACAGTTATCCACTCCGCGATGTCGCTTC 45775 25 100.0 42 ATGTCGCTTC ......................... ATCGTGAACTTGGCCCTAAGCTTAGAGAATACATCACTCCAA 45842 25 100.0 42 ATCACTCCAA ......................... TATATCCATATCAGCCTCCGGCCCACCGTTAGCTTGATGTCG 45909 25 100.0 44 CTTGATGTCG ......................... TTATCGAAATACATCAAACCGTCGTGCACGTGGGCCGCACACCG 45978 25 100.0 42 CCGCACACCG ......................... ATATACGTTTCACCCGCGCCACGCGTCTGTACTAATGCCGCG 46045 25 100.0 40 TAATGCCGCG ......................... GTGCGGCTTAAACGAATACGGAAAGACAAAGCTATTCTCG 46110 25 100.0 44 GCTATTCTCG ......................... AATGTATCTGTACAGACCCCGCATGCATAAAGTATCAAGTACAA 46179 25 100.0 46 TCAAGTACAA ......................... ATAGTCAGAAGAATAATACAACTATGACATTACTGGTAATGCCAAC 46250 25 100.0 45 TAATGCCAAC ......................... GAGGCGGAAGGTTGCGGCATATGGAATAATTGAATGTAATACCCG 46320 25 100.0 43 GTAATACCCG ......................... TTCCCGAAGTTGCCTGAAAGCGATGTGATCCGCGGCGCGTCTA 46388 25 100.0 44 GGCGCGTCTA ......................... CCATGGCCCGCAAAAAGAATATTTACGCTGGGCCTTCCTCTTGC 46457 25 100.0 44 TTCCTCTTGC ......................... TGTCCACTGTCTGTTTTGCAAATCTTCTACTATATCCTGGTAAG 46526 25 100.0 42 TCCTGGTAAG ......................... ATTGTCGCGCTGAAGGCGCCACAGCGCGGCACCGATGTTCAA 46593 25 100.0 45 CGATGTTCAA ......................... ACTACATGTAAATGACTGCGTGTTCATAGTGGCAACCTGTAGCGA 46663 25 100.0 CCTGTAGCGA ......................... GTTTAGGTCG ========== ====== ====== ====== ========== ========================= 18 25 43 CCAGAAATCAAAAGATAGTTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [60.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [268,14] Score: 0.18/0.18 # # Final direction: F [0.45,0 Confidence: MEDIUM] >NC_003364 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 591745 25 100.0 40 TTATCATGTT ......................... GAGGGAGGAGAGGAGTGGCAGATTACCACAACACTTTGCG 591810 25 100.0 42 ACACTTTGCG ......................... TGTAAAACTGCCCCCGGCCCCGGCCTCCACAACATATACATT 591877 25 100.0 42 CATATACATT ......................... GGTTATAGAAGCAAAAATAGTTGAAATACCGAGGATATGTTA 591944 25 100.0 37 GGATATGTTA ......................... TTAGCGCTTGGCTGGAAGAAGAGTTAGAAGAATTAAA 592006 25 100.0 42 AAGAATTAAA ......................... ATAGGGCTATTACAGAGAATATCTGGAAGAAGCTTAGCAACA 592073 25 100.0 37 CTTAGCAACA ......................... TATGGCTCTTCTTAAGTTATATTTTTGTAAAGAGAAA 592135 25 100.0 36 TAAAGAGAAA ......................... CAGCAGAGGCATTCTATTGGGATAGCGTAAAACAAT 592196 25 100.0 GTAAAACAAT ......................... TGTGGGTTTT ========== ====== ====== ====== ========== ========================= 8 25 39 GTTTCAATTCTTTTGTAGATTCTTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [301,802] Score: 0.18/0.18 # # Final direction: R [0,4.95 Confidence: HIGH] >NC_003413 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1091157 29 93.1 41 CCTATGTTCT -........................A... CTACGGTTAAAAACCCTGCAGATTCTCCCAGCATAGTCCCC 1091227 29 96.6 37 CATAGTCCCC .........................T... CCAGTAGAGTTCACGACGAGTGGGTGCAGTATTCTCG 1091293 29 96.6 38 AGTATTCTCG .........................T... TTAAGGTTGAGACGGAGAAGGCGTTTCTTGTATCTTTA 1091360 29 96.6 38 TGTATCTTTA .........................T... CCCGAAGACGTTCTCAAAGATTTAAAAAGAGATTTGCG 1091427 29 100.0 37 GAGATTTGCG ............................. GTAACAAAGGTGGGCGTTTCTAGAGAGGTTGGGCAAG 1091493 29 100.0 39 GTTGGGCAAG ............................. GGGCTACGAGGACGCCCTGAGGATTATGAAAGAGGTCCT 1091561 29 100.0 38 AAGAGGTCCT ............................. CGGAAGCTCATAGAGTTCAATGGAAGGTTGAAGCTCAT 1091628 29 100.0 39 TGAAGCTCAT ............................. GTTTGGGCGTATGGTGCCTTAGTGCACGAGTTCCACCGT 1091696 29 100.0 38 GTTCCACCGT ............................. TTTTCACGTAGTTTATCACGTCGTCTGCATTTCTTCCT 1091763 29 100.0 38 ATTTCTTCCT ............................. TCAAAGACTGTGTGTGGAGCAGCTATTTGCTTCGGCAT 1091830 29 100.0 GCTTCGGCAT ............................. AGTGGGCTTT ========== ====== ====== ====== ========== ============================= 11 29 38 CTTCAATTCTTTTGTAGTCTTATTGGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.97%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [203,479] Score: 0.18/0.18 # # Final direction: R [0.27,0.59 Confidence: MEDIUM] >NC_003454 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1836310 30 100.0 37 NNNNNNNNNN T.GGGGTCAG..CAT.TT............ TTATTCTTTCCCTGCAATCATTTATATCTTGTTCGAT 1836377 30 100.0 35 NNNNNNNNNN .............................. TTCTATAAATTTCAAATGTCTTACTATCTTTCCAT 1836442 30 100.0 36 NNNNNNNNNN .............................. TAAAAAACTCCTATCAGAAAAATTACCTTTTTTAAT 1836508 30 100.0 35 NNNNNNNNNN .............................. GAAGTGCTTTTGTAGAATATTTAAAGTATTGAAAA 1836573 30 100.0 35 NNNNNNNNNN .............................. CTTAGAACAAAGAGCAGAATTATTAAAAAATTCTC 1836638 30 100.0 35 NNNNNNNNNN .............................. TTTATCAGAAGCTTTTGAATTACCAGTTGTAGTAT 1836703 30 100.0 36 NNNNNNNNNN .............................. AAATTGAACAGGAAAATTTAAAAAATAAAGAAAAAA 1836769 30 100.0 38 NNNNNNNNNN .............................. TTGCTCTGTATCTTTTATTAGCTTTGTTTTGTTGTTCC 1836837 30 100.0 35 NNNNNNNNNN .............................. ATATAGTATGTATCATCAATTAAATACGCTTCTTC 1836902 30 100.0 39 NNNNNNNNNN .............................. GAGAACTTACTACAAAGGTGGGAATCCAGTCAAAAAAAT 1836971 30 100.0 36 NNNNNNNNNN .............................. AAGAGATTTTTTATTTGAATTAGCTAATGAAGCTAC 1837037 30 100.0 36 NNNNNNNNNN .............................. TAGATTATTGACTTCATTTAATCCTGGAATAGTTAC 1837103 30 100.0 38 NNNNNNNNNN .............................. TAAAAAACTTCTTTGAAATTATAACCACTGTCAGATTT 1837171 30 100.0 39 NNNNNNNNNN .............................. GAATACTTGAATCTTTTAACTTAAACATCTGTAATACTT 1837240 30 100.0 34 NNNNNNNNNN .............................. CTGTTGATTCAAATAATAAATTAGTTGGAAGTAG 1837304 30 100.0 38 NNNNNNNNNN .............................. TCAAAAATACATTATGTCAATGAATTAACTCAAAACTC 1837372 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 17 30 36 ATTTAAATTCTAATATAGAAATACATAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:90.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [519,196] Score: 0.18/0.18 # # Final direction: F [0.55,0.41 Confidence: LOW] >NC_003551 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1362696 36 100.0 58 ACGTCATTGA .................................... AACGTGTGTTGGAAGAGCATCTGGGACAACATAGAGGCAGACTTAAGGTGCAGGATTA 1362790 36 100.0 53 TGCAGGATTA .................................... TTTTGCGGAGTAATCCCATGTTGGTTGTCGGTGACCGTAGAGTGCGGGATAGA 1362879 36 100.0 46 GCGGGATAGA .................................... CCCGCGGACAAGGCTTCGGTCTTGTGGAGGGTCTATTGGAGCAGTA 1362961 36 100.0 51 TGGAGCAGTA .................................... GGGTTGCAGTTACACGGCGTATATCATGGCGTTCCCAGTGGAGTGGTCAGT 1363048 36 100.0 53 AGTGGTCAGT .................................... ACTCGGTGGACACAGAGCTCGCCGCCGCGCTATCGGCACTATGGGAATCAGTC 1363137 36 100.0 51 GGAATCAGTC .................................... GTGTCCGGTTTGCGACTCTTAGGGGGATAACGACTTTCACTTCCGCGTCCT 1363224 36 100.0 63 TCCGCGTCCT .................................... CCGGCGCGTTAGGCCTCAGCAACGTGGAGAAAGCGATACTTTATGACGATGTCCTTAAGGAGC 1363323 36 100.0 60 CTTAAGGAGC .................................... AAGTATCACAGCCAGGGCACGGACGAGACAGCGTACTGAGAGGGGCCAGAGTAGCAACAA 1363419 36 100.0 GTAGCAACAA .................................... GGCGGGCGGT ========== ====== ====== ====== ========== ==================================== 9 36 54 GTTTCATTACCCATATTATTGCGGGTTAATTGCGAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-5.20,-5.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [45.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [365,1013] Score: 0.18/0.18 # # Final direction: F [0.27,0.18 Confidence: LOW] >NC_003551 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1306914 36 100.0 70 ACCGCCTGCC .................................... GGTAATGAAACTAGTATAATCTCCGTTAATTCATCTGCTACCTCTGGTAGTCTCTGTATTTCCGCAAACG 1307020 36 100.0 54 TCCGCAAACG .................................... AACGCCTGGAGAAAAGCCTTCGGTAAACCCCTAACAGACACAGCCCTAAGACCC 1307110 36 100.0 60 CCTAAGACCC .................................... AATACCAGAACGTCTCACCCGCATGGAACTTCGGCTTCAGCGGAGTACCACACTCACAGA 1307206 36 100.0 55 CACTCACAGA .................................... CGCTGTGGATAAACGATTGTCCACCGTGATACATAGCCGTCTAACCCTTCTTCGT 1307297 36 100.0 65 CCTTCTTCGT .................................... CTGTCTTCGCTTCTGGCCTTACTGTCTTCGTGAATGTTCCAAGCTCCAGGTAGTCAACTATCATC 1307398 36 100.0 54 AACTATCATC .................................... TCTTGAGTAGGATACCGTTGATGATTGCCTCTCTCGTTTCCTTTGCCTCGTAGC 1307488 36 100.0 50 GCCTCGTAGC .................................... TGTGCTGGTGCTAAGTGAAAAGATTGCCACCCAATGCCCTAGATCTCTGA 1307574 36 94.4 AGATCTCTGA .......................C...........T CCCACTACC ========== ====== ====== ====== ========== ==================================== 8 36 58 CTCGCAATTAACCCGTAATAATATGGGTAATGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.89%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.90,-4.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [41.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1087,412] Score: 0.18/0.18 # # Final direction: F [0.96,0.27 Confidence: MEDIUM] >NC_003551 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1297217 36 100.0 51 GTACAGTGCA .................................... TCTGTTGTATTGGTATTGGGATGTTCCATGTGACTTTTACTCTGGCGTATG 1297304 36 100.0 51 CTGGCGTATG .................................... AGACAAACTAGTAGCGTTCGCGAGATTCAAAGGAGATATCACGGTGTGTTC 1297391 36 100.0 61 CGGTGTGTTC .................................... TTTTGCAATCGATGATGCTTTTGCTAGAATTTCTTTCATTTCTGGGTCTAAATCTCTTAAT 1297488 36 100.0 58 ATCTCTTAAT .................................... CATGGACATAGACACGGACATAGACATGGACACGTCAACGGCTGTCGACATTCTAGCC 1297582 36 100.0 CATTCTAGCC .................................... GGCGGCCAGT ========== ====== ====== ====== ========== ==================================== 5 36 55 GTTTCATTACCCGTGTTATTACGGGTTAATTGCGAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-10.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [341,566] Score: 0/0.18 # # Final direction: F [0.64,0 Confidence: HIGH] >NC_003551 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1111465 36 100.0 57 AGGTCACTAG .................................... ATGCAGGCACAATGAGTTTGCGGACAAAGACGATAATGTATTGTTAAGAGTGTATAC 1111558 36 97.2 60 GAGTGTATAC ...................C................ TATGTTAGCTGGTCGAGGAAATTGTGGCGGTGTTAAACTCCGGAGAAACACGTCGAACCC 1111654 36 100.0 62 CGTCGAACCC .................................... CTCGCGATGCGTGTGCGGACCGCACCGTGCCCGCGTGCTATGACGGATCTCCTCTTCGCGAC 1111752 36 100.0 54 TCTTCGCGAC .................................... ACATGAGGTCCAGTTCCAGAAGCCTGAGCGGAAGCGCAAGGCGCTCGACCCGGA 1111842 36 100.0 49 TCGACCCGGA .................................... GGTCAAGGAAGTCTTCCCTTCACTGAAGGAAAAACTAGAGGATGACGAG 1111927 36 97.2 55 GGATGACGAG .......................A............ AACCTAACTTAGCATATGATGGTGGTTATAATTCAGATATTAACGCTAGCATATC 1112018 36 100.0 53 CTAGCATATC .................................... CAGACTGGGTAAGGGAGGACAGAGACGGGGAGGTGGAGACATGGGTCCTTAAT 1112107 36 100.0 55 GGTCCTTAAT .................................... GAGGGCAATGAGGAAGGAACAGCTGAGAGCTCGGGGTATCACCGAGCTAACACCG 1112198 36 100.0 52 GCTAACACCG .................................... TCGTAGGGGTAGTAGAAGAAGCATACGAAGGACTCATGGAATCCTGCAAAGA 1112286 36 100.0 56 CCTGCAAAGA .................................... CTAGCTGTGAAGGGAGTGTGTGTAGCGAGCCCCTGAGAAAAATAATCCGTTGGTTC 1112378 36 100.0 72 CCGTTGGTTC .................................... TGCTCGCCCGCTTCTTCCGCGAGACCCTGTATCATGACCGGGAAGAACGCGCTACCGCTTAGCGAGAAGAAC 1112486 36 100.0 CGAGAAGAAC .................................... GGCGGGCGGT ========== ====== ====== ====== ========== ==================================== 12 36 56 GTTTCATTACCCGTATTATTACGGGTTAATTGCGAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-10.60,-9.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [48.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [996,904] Score: 0/0.18 # # Final direction: F [0.64,0.41 Confidence: LOW] >NC_003552 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2369436 37 100.0 36 CTGCAAACAC ..................................... TTGCAGGGGTAATCATGACTATACAATTAAGAAACA 2369509 37 100.0 36 TTAAGAAACA ..................................... TGAATGCTGTAATAGCTGTACTTTTAATTTCCATTA 2369582 37 100.0 36 ATTTCCATTA ..................................... CGGTAACCATCACTTTTGAAATTTCCTCTTAACATT 2369655 37 100.0 TCTTAACATT ..................................... CAGGTCAAAC ========== ====== ====== ====== ========== ===================================== 4 37 36 ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.16%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.90,-2.90] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [855,270] Score: 0.18/0.18 # # Final direction: F [4.68,0 Confidence: HIGH] >NC_003552 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2378684 37 100.0 36 TTTTTGCCCT ..................................... CAAACCATTGCTTCTCTCCTTATTATGTGTATCAGG 2378757 37 100.0 36 GTGTATCAGG ..................................... AAAGATCTTATTTTGCCTAAAGGAATGTACTATCAA 2378830 37 100.0 36 GTACTATCAA ..................................... CCCGGCAACATATCCAGTTGTTGTAGATTTTTGAGT 2378903 37 100.0 37 ATTTTTGAGT ..................................... CTCCTTCGGGGCCTGTTGCGTACGACTTGAAATCCTT 2378977 37 100.0 35 TGAAATCCTT ..................................... AAAATTGAGCAATATAAATAAAATTGATATGTTTT 2379049 37 100.0 GATATGTTTT ..................................... CCAGCCGTTT ========== ====== ====== ====== ========== ===================================== 6 37 36 ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:59.46%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.90,-2.90] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [282,1474] Score: 0.18/0.18 # # Final direction: F [4.5,0.18 Confidence: HIGH] >NC_003552 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2379328 37 100.0 38 AAGCGTATAT ..................................... TCCGGAACTGGAAACCGTGTAATGGTAACCGATGACTA 2379403 37 100.0 36 CCGATGACTA ..................................... TCCTCGATTTGATCACAGCATTTCTTAACGTGATAC 2379476 37 100.0 39 AACGTGATAC ..................................... TAATCAAGCTCTTTTTGAGCCTGGTTCCCGGGTTCGAAT 2379552 37 100.0 36 GGGTTCGAAT ..................................... ATCTCTCAGGTTGGGATGATATCGCCGAAATACGGT 2379625 37 100.0 38 GAAATACGGT ..................................... TTACAACAGGGCTATGAAAAACACTTTGTACAGAAAGT 2379700 37 100.0 34 TACAGAAAGT ..................................... CTGAAGGCTTTCCCGGTAATCCCGAATTCAGCGT 2379771 37 100.0 36 AATTCAGCGT ..................................... ATATAAGCGTCTTTTCCTGTGTATGTGATCCACTTT 2379844 37 100.0 36 GATCCACTTT ..................................... CCTTGTTGGTAATTAGTACAATGTTACCAGTATCAG 2379917 37 100.0 38 CCAGTATCAG ..................................... ATTCCTCCAACTGCTTTTTTAGCTGGTCTTCTGGAACT 2379992 37 100.0 36 TTCTGGAACT ..................................... ACTCTAAAAGAAGAGCTTAATGAACTACGTATAGAA 2380065 37 100.0 35 ACGTATAGAA ..................................... TACCCAACTGTTCAAATTTCAAAGCCACTACGTGA 2380137 37 100.0 37 CACTACGTGA ..................................... ATATGCGTTCCTGGCTTCTATAACCTCATCAGTCAGG 2380211 37 100.0 38 ATCAGTCAGG ..................................... TATCTGGTGTTACAGGGGCTATAATTGATGTGAAAAAA 2380286 37 100.0 36 TGTGAAAAAA ..................................... AAAGATTCCAGACGGCACCATTGAATGTGTCGAAGT 2380359 37 100.0 36 GTGTCGAAGT ..................................... CAATGTTTTTGTATTTTATCACGGTCTCACCAGTAA 2380432 37 100.0 35 TCACCAGTAA ..................................... TCTTTTTGGAGGCTACAGGAATTACTACGGACACC 2380504 37 100.0 34 TACGGACACC ..................................... TTATATTTCGACGCAAATCACGAAATATGATAAG 2380575 37 100.0 35 ATATGATAAG ..................................... AAAATTGCTGTAATGTTCCGCAATCCTCATTATTA 2380647 37 100.0 37 CTCATTATTA ..................................... ATTTAGATTTTGAGAGGATGGTAAGGCACAAATCTGC 2380721 37 100.0 35 ACAAATCTGC ..................................... TTTTAGGATCCTGTAACAACTCTGCACGCTTCATA 2380793 37 100.0 36 ACGCTTCATA ..................................... AAAGATTGAATGGGTATTCAGAATGAACTTCTTCCC 2380866 37 100.0 34 ACTTCTTCCC ..................................... CTTACATGGTAGGGATATTAGCAGAGAATGATAA 2380937 37 100.0 41 AGAATGATAA ..................................... TGATGGACATTAATATTTTGACAGTTGTCAAGCCTCACCGA 2381015 37 100.0 36 GCCTCACCGA ..................................... TGTAATTGAGGGAAATCATGAATCCTGACCTCTACA 2381088 37 100.0 GACCTCTACA ..................................... TCTTTACAG ========== ====== ====== ====== ========== ===================================== 25 37 36 ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:59.46%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.90,-2.90] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [926,245] Score: 0.18/0.18 # # Final direction: F [4.68,0 Confidence: HIGH] >NC_003552 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 4523448 30 100.0 44 NNNNNNNNNN TAGGATT.TA..T....AA..A........ CATTGGCTTTAAGGATCCCTGTGATCCCTGTAATACACTTAATC 4523522 30 100.0 39 NNNNNNNNNN .............A................ CGTGCGTGGACTCGGAACCGTCTCCCATTTACATTTATT 4523591 30 100.0 38 NNNNNNNNNN .............................. CTAACTTTAATGGGAACGTCTGCGGCTGCTGTTGCTGC 4523659 30 100.0 38 NNNNNNNNNN .............................. CGGTTGCAGGAGCTGTAGCGAATGGCTTCATGCAAACC 4523727 30 100.0 36 NNNNNNNNNN .............................. TGCATATACTTTCACGCTATCATACCTTTCAAGCGG 4523793 30 100.0 37 NNNNNNNNNN .............................. ATCCTTTGAATCATGGTTAAAATCCTCAGATATGACC 4523860 30 100.0 36 NNNNNNNNNN .............................. CTATCAGGATGTCAATTGGTGTCCTGATGATATCCA 4523926 30 100.0 36 NNNNNNNNNN .............................. AGAGTTTTGAGGTCCTTGAACCTGAAAAAAGAATCG 4523992 30 100.0 38 NNNNNNNNNN .............................. ATTCAAAAACAGTTGCATGTTACACCGGTGCAGATGTG 4524060 30 100.0 34 NNNNNNNNNN .............................. TCGGCACAGTAGCCTCTAATGGTTCATACATAGT 4524124 30 100.0 34 NNNNNNNNNN .............................. AGTTTTGTTTTGTTGCTATAAAAAATAATAGTGC 4524188 30 100.0 36 NNNNNNNNNN .............................. AACGACATTCATCACAATGTAAGGAATGCTAGTGAT 4524254 30 100.0 36 NNNNNNNNNN .............................. AGAATCAAGTACGGCTGATGTGTCTTTCCAAGATGT 4524320 30 100.0 36 NNNNNNNNNN .............................. AAATGCACGAGCCGCAGCCGTAATTATATTGACGAC 4524386 30 100.0 36 NNNNNNNNNN .............................. TATATTTTTTTGTTGACTCTCAAGAAATCAAGCTGT 4524452 30 100.0 41 NNNNNNNNNN .............................. CTTATACCTATAAGCCTCCCGTAACCATAGAGGACGACGAG 4524523 30 100.0 40 NNNNNNNNNN .............................. GCTCAGGAGATTCAGCAGGGGTAGCTAACGTCATAAACTA 4524593 30 100.0 35 NNNNNNNNNN .............................. AATCTTTCCATTCGTATGGTTTCTCATCTTTTTTA 4524658 30 100.0 36 NNNNNNNNNN .............................. GATTTCTTCAGGAGCAGGGACCTGGACAACACCGAC 4524724 30 100.0 40 NNNNNNNNNN .............................. TATCATAGGTTGAGTTCTCGGTATGAGATGGATGTTAGAA 4524794 30 100.0 38 NNNNNNNNNN .............................. TTTGTAAGTGAGCCTTCGATAGATGCCTCTAAGCAGTT 4524862 30 100.0 38 NNNNNNNNNN .............................. TTGAAGTCTAAGCTAACTCCTGAGATCCAGGAGAAAAT 4524930 30 100.0 35 NNNNNNNNNN .............................. AGCCTTACATTCTTCGCATCGAGTTCATATTCAAG 4524995 30 100.0 35 NNNNNNNNNN .............................. ACTTCAAGAATGCCAGGTAAACCGCATCTGAGACC 4525060 30 100.0 36 NNNNNNNNNN .............................. CTGCTGAAACTTCATATTGTTTCATGTTCTCTCCTT 4525126 30 100.0 34 NNNNNNNNNN .............................. ATAATCCAACGGGGCATAGTGTCAGGCAGTATGA 4525190 30 100.0 39 NNNNNNNNNN .............................. AAGTTGCAGAGGACTATCGAAACGAAACTGAAGATATGC 4525259 30 100.0 36 NNNNNNNNNN .............................. TACATCTTCATATTCATATATATACACTTCAGATAT 4525325 30 100.0 36 NNNNNNNNNN .............................. GTTGAATGCGAACGCCTGCGGGGATTTCCGGATAAC 4525391 30 100.0 35 NNNNNNNNNN .............................. ATGCTATGCTCGGAGCCACTCCGAAAATGAGAGAG 4525456 30 100.0 36 NNNNNNNNNN .............................. ATTCCACCGCGACAAATAATATATACGTGGATCTCA 4525522 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 32 30 36 GTTTCAATCCCTCTAAGGTCTGATTTTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.80,-1.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [85.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [126,313] Score: 0.18/0.18 # # Final direction: R [0.27,5.46 Confidence: HIGH] >NC_003912 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1594102 37 100.0 29 NNNNNNNNNN .A................................... TCCATTCTCATGAAATATTTAGCCATTAT 1594168 37 100.0 29 NNNNNNNNNN ..................................... GGTAGTAGAATTATCTTTGCTGGTATTAA 1594234 37 100.0 29 NNNNNNNNNN ..................................... TCTAAAATTGTTTCATTTTCATTAGTAGC 1594300 37 100.0 1 NNNNNNNNNN ..................................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 4 37 29 TGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:78.38%AT] # Reference repeat match suggestion: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 97% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [120,146] Score: 0/0.18 # # Final direction: R [0.5,0.68 Confidence: LOW] >NC_003869 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2326770 30 100.0 37 GCTTGAACGT .............................. CAGTTTCAAATTGGATATAAAGGTTATATTCAACTCG 2326837 30 100.0 37 ATTCAACTCG .............................. ATATAGCTAAAGAAGTTAATAAACTTATTTCTTGGTT 2326904 30 100.0 37 TTTCTTGGTT .............................. CTGGGCAAAAGAAGCAATTGTGAATATGTTTCAGAAA 2326971 30 100.0 38 GTTTCAGAAA .............................. TCATCTAAAACCGTAAGCTTATACGTCACGCAAATTGC 2327039 30 100.0 37 CGCAAATTGC .............................. CCAAGGCTTTGGCGACACATCAGAAACCATATGTAGC 2327106 30 100.0 36 CATATGTAGC .............................. CTAAAAACAAAAGGCTCGCAATTGCGAACCTGTTCC 2327172 30 100.0 37 AACCTGTTCC .............................. TGCCCCATGATTTAAGTTTGAGTAAGGGACTCCGTCA 2327239 30 100.0 37 GACTCCGTCA .............................. GATTTTTTTATAGTGATAATCTTACGGTAATCTTCTA 2327306 30 100.0 36 TAATCTTCTA .............................. ACTGGAAAAGAATGCGGACAAGCAAAAATCCTCACG 2327372 30 100.0 37 AATCCTCACG .............................. AGCAATAAGCTCTTTCCAGTTCATTTGATTTTGCACA 2327439 30 100.0 36 ATTTTGCACA .............................. ACTTTCAGATGAAATAGCAAACAATCTCACAAAAGT 2327505 30 100.0 38 TCACAAAAGT .............................. TGTTTAACCGCTTCTTCTATGGCAAGAAGTATTACGCC 2327573 30 100.0 36 GTATTACGCC .............................. TCTATAGCTTCTTTTTCTAAATCAGCTATTGGTAAG 2327639 30 100.0 37 TATTGGTAAG .............................. TTGGTAACCGAGACCCCCATAAACCTTGATTGCTATA 2327706 30 100.0 37 GATTGCTATA .............................. TTCCATACAAATCTACAGCAACCAAAAGTCTTTTCAA 2327773 30 100.0 36 GTCTTTTCAA .............................. AAAATGGACAAGTTAGACATAGCTTTGAGTTTTGGA 2327839 30 100.0 37 GAGTTTTGGA .............................. CACTGAAAGGAGGCGAAGTGAATGAACAGAAGATGCG 2327906 30 100.0 36 AGAAGATGCG .............................. CTTATGACTTACTGGCTATACTTATACCCGCCCTGG 2327972 30 100.0 39 CCCGCCCTGG .............................. ATATTACTGCTCCCTAAAAAATCAAATTCTTTATCGAAA 2328041 30 100.0 37 TTTATCGAAA .............................. AGGCTACACGACACAATCTGGCTGTCATCTTTATATG 2328108 30 100.0 36 TCTTTATATG .............................. GGCTAGACATTATAAACACCTTATCCGAACACTATA 2328174 30 100.0 36 GAACACTATA .............................. ATTTTTGTTCGGTTCATACACTCACCTTCTTTGGCC 2328240 30 100.0 36 TTCTTTGGCC .............................. TTGCGCCTCCGCACTTCCCACAGTATATCAAACCGG 2328306 30 100.0 36 ATCAAACCGG .............................. GCCTCACCGGCCACGAACTTACCTATCGCCATGTTG 2328372 30 100.0 36 CGCCATGTTG .............................. ACTGGCGATTTATTGGCAGTTTTAATGTTGCTGCTT 2328438 30 100.0 38 GTTGCTGCTT .............................. AACTTTCCACTCTACTATGTAACCTTGTGCATGTCCTA 2328506 30 100.0 38 GCATGTCCTA .............................. TTTAATACATCATCTCTGTTCGGAAGTAGTATTTCAGC 2328574 30 100.0 36 GTATTTCAGC .............................. ATTTCGTTAGCTGATATATTACCCACCGGTAGGCTA 2328640 30 100.0 36 CGGTAGGCTA .............................. CTGGTGGAACTACTACCCAGAAGGGGTCATAGAGGA 2328706 30 100.0 36 TCATAGAGGA .............................. TGAGCTGCCGGAGTTCAACTTCAACTACGAAGGCGA 2328772 30 100.0 37 ACGAAGGCGA .............................. ACGGCAATCCATTCATGCCAGTGAGGGCAACAGTGTC 2328839 30 100.0 38 CAACAGTGTC .............................. GCCCAAAAAGGAAGGCGGTAAGTATGAAAAAACCTATT 2328907 30 100.0 37 AAAACCTATT .............................. CTTCATAAGCTTTTTATAACCTGCTATTGTAGTCTGT 2328974 30 100.0 36 TGTAGTCTGT .............................. CCTCAACCCTCTGCGGCAATGCATCTTGCAGCTCAG 2329040 30 100.0 36 TGCAGCTCAG .............................. CCTTAATTAGAAAAGCACAGCGGGTAGGATACGACG 2329106 30 100.0 36 GGATACGACG .............................. ATCCATGGACGTGACTCCGGTCTACAGCCGTGAGTC 2329172 30 100.0 37 GCCGTGAGTC .............................. GACAACAAAGCGATGTAGAGAGTGGAGAGATAGCAGT 2329239 30 100.0 37 AGATAGCAGT .............................. AGCGTTCAAACTGCTCTTCAGACAATTCATTTTCCGT 2329306 30 100.0 35 CATTTTCCGT .............................. GTACTAGCCAGTTGTTTAATTCGTCCCTTATCCAA 2329371 30 100.0 37 CCTTATCCAA .............................. TGGTATATGTAGATGGAATAGGCGAAGTACCAATACC 2329438 30 100.0 36 TACCAATACC .............................. TATAGTCCCTATAACAAAAAGCCCGCCCAGTTGAGC 2329504 30 100.0 37 CCAGTTGAGC .............................. AAACCTTTCATTCTAATAACACCTTCCCGCTGTATAG 2329571 30 96.7 36 CGCTGTATAG ........T..................... TTGAGAGTGTTCCTTCAGCGAGGCTGAGGCAAAATG 2329637 30 100.0 37 AGGCAAAATG .............................. CTATAAAAACATAGGAGAAGACCTTGTCATCATCATG 2329704 30 100.0 38 CATCATCATG .............................. ACAGTTCTAACGTGAGATTGTGGACAGGTAAACTATTG 2329772 30 100.0 36 TAAACTATTG .............................. CTGTAATGGAATTCTTTGCAGGACGCAAGCCACAAA 2329838 30 100.0 36 AAGCCACAAA .............................. TTAACTGAAGACCCAAGAAGCGAAGAAGAGAAAGAA 2329904 30 100.0 37 AGAGAAAGAA .............................. GAGCTGGTAAGTAAGTATTTTCCGGCTTGGTATTTAG 2329971 30 100.0 37 TGGTATTTAG .............................. GCACAAATGAGTTAAGTAGCTTCAAGTACGTTGCATC 2330038 30 100.0 37 ACGTTGCATC .............................. TGTCAAGATTGTCACAACAAAGAGCATAGTGCAAAAA 2330105 30 100.0 36 AGTGCAAAAA .............................. AGGGTAGTGGCAAGCTAAATGTAGAAGGATTAGCTA 2330171 30 100.0 36 GGATTAGCTA .............................. CCAATTAGTGCAGGTGTAGGCTTTGTAACAACTCCT 2330237 30 100.0 36 AACAACTCCT .............................. AGGGTAGTGGCAAGCTAAATGTAGAAGGATTAGCTA 2330303 30 100.0 38 GGATTAGCTA .............................. TCCTTTTTATCAGCTCAGACCTGAAGAAAGAGCGAAAA 2330371 30 100.0 37 AGAGCGAAAA .............................. CCAGCATTGTCTAAACACTTAAAGAAGCGCAAAACAG 2330438 30 100.0 37 CGCAAAACAG .............................. CATATACTAAACTGGGGTAGTATGCACATTTTTCCGT 2330505 30 100.0 37 ATTTTTCCGT .............................. AACTGAGCGGACCCTCTAAACCTGGTGTTGGCCCAAA 2330572 30 100.0 37 TTGGCCCAAA .............................. GAGGCTCAAAAACAGGCTATAATCGCTTTAGTGAAAG 2330639 30 100.0 39 TTAGTGAAAG .............................. GCAACAGGGAAAAGAAAAAGGATTGTGCGATATGTAAAA 2330708 30 100.0 38 ATATGTAAAA .............................. AGGCACCTTACGATGATGCCGCAACGTATTCAGGTACT 2330776 30 100.0 38 TTCAGGTACT .............................. TGAGCATGTCCTCCAAGGCGCTGAGAGAATTAGACAGG 2330844 30 100.0 37 ATTAGACAGG .............................. GGCATTGCTTTGAAATGTAGAAGTCCTGTTATGTAGT 2330911 30 100.0 37 GTTATGTAGT .............................. AATCCCTTAACAATCCCTTTTATTGGGACCCCTTTAG 2330978 30 100.0 36 ACCCCTTTAG .............................. GATGAGGAGTTGAATAGGTATCAGGATATTATTGAG 2331044 30 100.0 38 TATTATTGAG .............................. AAATTCTCTCTGTCAAAATATTGCACTTCATTATAAGC 2331112 30 100.0 CATTATAAGC .............................. AAAAATGCCA ========== ====== ====== ====== ========== ============================== 66 30 36 GTTTTTAGCCTACCTAAAAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.80,-1.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [922,529] Score: 0/0.18 # # Final direction: F [5.28,0 Confidence: HIGH] >NC_003869 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2537225 30 96.7 37 GCACAACCTA -............................. CGAAACATGTAGAGGCAGGTCAGGATTGGAGTCGTTA 2537292 30 96.7 36 GGAGTCGTTA ............T................. CTTTTCAGACTTCTCCCAAATCCTATCTGAAAGGAA 2537358 30 100.0 40 CTGAAAGGAA .............................. ACATCATAGCCCTCCTCGGCGAGCCAAGCCGCAATGTACA 2537428 30 100.0 36 GCAATGTACA .............................. AATAACAAAAATCAGAAGAAAACCAGCACGAACGAG 2537494 30 100.0 37 CACGAACGAG .............................. ATAGAACGCTTCAGAGGATTAAAATCTATCCTATCAC 2537561 30 100.0 37 ATCCTATCAC .............................. TCAGCTAGTAAGAATTTTACTTCTTAAAGAGATTAGA 2537628 30 96.7 37 AGAGATTAGA ............T................. CCACTCCCACCATATTTGCCGGGATTAAGGCTCCCAG 2537695 30 100.0 38 AGGCTCCCAG .............................. GTCAACAATTCTTAATATAGATTTTCTTGAAGAAGAAG 2537763 30 100.0 40 GAAGAAGAAG .............................. AATGTAGTCTGTATTCTGGCATGTCCCAACCGTTTTTGAA 2537833 30 100.0 36 CGTTTTTGAA .............................. GCGGGGGCCTGCCCCAGACGTATACAGTTAGAAGCA 2537899 30 100.0 40 GTTAGAAGCA .............................. CTGTCGCAAGATTTTTAGGTTTTCATAGTCCAGCTGAAGA 2537969 30 100.0 38 CAGCTGAAGA .............................. TAATTATGTCCCTGCACGTGTGCACCTATTGTATCACG 2538037 30 100.0 37 TTGTATCACG .............................. CGACGATAATAAAGTCCATGTTAGGTGTGATAACAAT 2538104 30 100.0 37 TGATAACAAT .............................. TATGACTTACTTCTTTCGGCAGACAATGCACAAACGA 2538171 30 100.0 40 GCACAAACGA .............................. TTTTAAACGAAGAAAAGGAAACATAAAAAGTGCCCGCAAA 2538241 30 100.0 41 TGCCCGCAAA .............................. GCGCAGACAAGAAGTACAAGCGGTAGAAAGAGAAGACTTAC 2538312 30 100.0 40 GAAGACTTAC .............................. CAGCGATGGGAGATTAACAATACGTTACTTGGATGTAAAT 2538382 30 96.7 39 GGATGTAAAT .........G.................... ACACGGCCAACTACTACGTTTTGCGCCGGACCAACATGC 2538451 30 100.0 40 ACCAACATGC .............................. TTACAGTACAACATAAACATGGAAGATTTTGTATTTGCGA 2538521 30 100.0 37 GTATTTGCGA .............................. GTCACTATGGTAAAGAAGTTAATATTGTGGGGCTTAA 2538588 30 100.0 36 TGGGGCTTAA .............................. ATGAAGGCTGGAAATTGATGATAAAAACATAGTATA 2538654 30 100.0 38 ACATAGTATA .............................. ATATGGGAAACTATACACTAATGATAGCAAAAATGAAG 2538722 30 100.0 36 AAAAATGAAG .............................. CGTTCCAACCCTCTTTTTTAAAGAGGGCTCGAATGA 2538788 30 100.0 37 GCTCGAATGA .............................. ACTTTTGTACTTGAAATATAGTTGTAGAATCTGTACT 2538855 30 100.0 39 AATCTGTACT .............................. TCTATCTCTACCGGTTGTGGCAGCGTATACCCCATCCTC 2538924 30 100.0 CCCCATCCTC .............................. ATTAAAAGCT ========== ====== ====== ====== ========== ============================== 26 30 37 GTTTCAATCCCTCTTAGGTAGGCTAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.50,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [60.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [256,2007] Score: 0.18/0.18 # # Final direction: R [0,5.73 Confidence: HIGH] >NC_003869 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2540585 30 100.0 39 CTTGAAGAAC .............................. TCCGTGATAAACAAGAAGCCTGGGATGCAGGCTTCATGA 2540654 30 100.0 37 GGCTTCATGA .............................. AGGGCAAATATAGGCGTTTGAAAGGGGTGTTTAGGGA 2540721 30 100.0 37 TGTTTAGGGA .............................. GACTTGGTTACACACTTGTAAGCAATGGGGCAATAAA 2540788 30 100.0 37 GGGCAATAAA .............................. AAAAGCGCAAATAAACGCTTTTCAGGACGGTTTTTAG 2540855 30 100.0 35 CGGTTTTTAG .............................. AGGCGAACTGATAGCAAAAAAAATAGCAGTTGAAG 2540920 30 100.0 38 GCAGTTGAAG .............................. AAAATTATTTTGAAGAGAATTTTCAGAAAAATTGAAAT 2540988 30 100.0 36 AAATTGAAAT .............................. CTCCTTTAACATTTTTTCTTTGCCGGGATTAAGGCT 2541054 30 100.0 40 GATTAAGGCT .............................. GTGGAGTTGTGAAGGTGGTGAGGTGATGGCGAGGTATAAT 2541124 30 100.0 35 GAGGTATAAT .............................. GTCGTAAAAGCAAACCACGCACCGATAAGAGTAGA 2541189 30 100.0 40 TAAGAGTAGA .............................. CCATAGAAATTCCTGAAGAATCATTTGAGGAATTTATTAA 2541259 30 100.0 39 AATTTATTAA .............................. GATAAAATGCGTGGTGGCGTAAGAAAAAGAGGTAAGAGA 2541328 30 100.0 37 AGGTAAGAGA .............................. TTGAGCTTCTTAGAGAAAAAGGAATACTCATCAAAAG 2541395 30 100.0 37 TCATCAAAAG .............................. CATCATAATCACCCAAGTCATACTCGTACAAGCTTAA 2541462 30 100.0 39 ACAAGCTTAA .............................. TGGACAAGCACGCAGACCCGAATATGTATGGACCACCAA 2541531 30 100.0 39 GGACCACCAA .............................. ATGATTTCCCCCAGTAATCGCCAATATTTTGTTGGCGAT 2541600 30 100.0 37 TGTTGGCGAT .............................. ACTGGGGGAAATCATGAGCAACGCAGTGTAAAAGAAA 2541667 30 100.0 39 GTAAAAGAAA .............................. GACTTAGGTGCTAAGCCAGTCGATAAAGAAAAACAGATT 2541736 30 100.0 37 AAAACAGATT .............................. GCCTCTCATGGATTGGATAAGGGACGAATTAAACAAC 2541803 30 100.0 37 ATTAAACAAC .............................. TTTTAACAGTTAAGCAAGCAGTTAACAAATTCTTTAA 2541870 30 100.0 37 AATTCTTTAA .............................. GAGCTTTTGAATGTAATGGAGAATTCTTCCACATCTG 2541937 30 100.0 38 TCCACATCTG .............................. GATGAGGAGGATTATGCTCCTTATGCATGGGGTTCTAC 2542005 30 100.0 36 GGGGTTCTAC .............................. TTTAAAAATTTAGAAATTGGTGAGATTGGTGGGGAG 2542071 30 100.0 39 TGGTGGGGAG .............................. TGTCAAAGGTGATAGTATGATTAACGCACGTATTATGGA 2542140 30 100.0 36 GTATTATGGA .............................. GCTGGCAGAGCTGAATAAGAGCTTTGGTAATGTCGA 2542206 30 100.0 39 GTAATGTCGA .............................. TAGCGTGGGAGGTTGGTGTTAACGAGAGTGCCGTCGGAG 2542275 30 100.0 39 GCCGTCGGAG .............................. AAGAGCTTGAAGTTAGAGTGGCACAGATTAGCAGAATAT 2542344 30 100.0 35 AGCAGAATAT .............................. AGCAAAAGTAAACAGAATAAGAATGAGATTAGATC 2542409 30 100.0 38 AGATTAGATC .............................. TTAAAAATATCAGCTAGCTTTATAAGTGTCTCATAATC 2542477 30 100.0 38 TCTCATAATC .............................. GTTGGTATTAGTTTTGTAACTTATTCAGCAATAGAAAA 2542545 30 100.0 35 CAATAGAAAA .............................. GCAGATGAAACAAGTTTTGGAGATGCTGCAGCAGT 2542610 30 100.0 40 CTGCAGCAGT .............................. GTGCTTTTATTTTTGCATACAAACTTACGCTGACACCGAG 2542680 30 100.0 40 TGACACCGAG .............................. GGGTGAAGAAATAAGGACAGGTCAAATAAGTGATGAAACA 2542750 30 100.0 38 TGATGAAACA .............................. CGTATTGCCGACCTTGAGATGGCAATAGCAGCATTACT 2542818 30 100.0 37 CAGCATTACT .............................. TGCCACACGTTGTGCCACGTGTGGGCATAAGTTCGAC 2542885 30 100.0 38 TAAGTTCGAC .............................. TCTGTTGCTTTCATCTGTTCTAAAAAGTCCTGTGTTAC 2542953 30 100.0 37 CCTGTGTTAC .............................. TATGACTTGCCGTATGCGATAGTTCAACACGAAAGAT 2543020 30 100.0 36 CACGAAAGAT .............................. CGAAAGGCCAGGGGTGGGGCCGGGGGTGTAGTGCAA 2543086 30 100.0 37 TGTAGTGCAA .............................. CTGGCAGCCTGTTGCGACAACCCCTATATTTTTACGA 2543153 30 100.0 37 ATTTTTACGA .............................. CTAACATCCCGGCCAATATCAATGCCACTCCACTATC 2543220 30 100.0 37 CTCCACTATC .............................. AGACTTTGAAGTAATAGACGAAGACATACCATTGCCT 2543287 30 100.0 36 ACCATTGCCT .............................. TGGCTTTTGGGCAGGCGATTGCGGCTCCATTCGGGC 2543353 30 100.0 36 CCATTCGGGC .............................. AAGGGATAGCAAAATATTTCGGATTACAGAAAAAGG 2543419 30 100.0 36 CAGAAAAAGG .............................. TTTTTGACATAACATCCTACCAAATCTGCACCTAAA 2543485 30 100.0 38 TGCACCTAAA .............................. GCCAATACTACCTCGTACTTACGCTCTCCTACTGCTAC 2543553 30 100.0 36 CTACTGCTAC .............................. TCCACCCCCCACCAAGGTCGAGGACATCCCCCACCT 2543619 30 100.0 37 TCCCCCACCT .............................. TGAAACCACACGACTAGGATAGATTCCCCTAGCCACG 2543686 30 100.0 39 CCTAGCCACG .............................. GAGCTGTCCCCCCAGATAGACGAGTATCTGGTTCCGGCG 2543755 30 100.0 37 GGTTCCGGCG .............................. GTTTCTGGATGAAACTGGTCGGGTCAGTCTAGCTAAA 2543822 30 100.0 35 TCTAGCTAAA .............................. CGCAATTGTCCGTCCATTTCTAAATTTACCTTAAT 2543887 30 100.0 36 TTACCTTAAT .............................. GAAATTATTTTTACACTGTTTTTGTCGTGTCTACTG 2543953 30 100.0 38 GTGTCTACTG .............................. CATACTTTCAAGTGTTAAAATAGAGCGTTAGTAATTTT 2544021 30 100.0 39 TAGTAATTTT .............................. TAAATCACCGCTCCAGCTTCCGCCCATTGCTCCTGATAG 2544090 30 100.0 36 CTCCTGATAG .............................. CAAGATACTACTGGCTTAAAAAAAATATAGAGCAAT 2544156 30 100.0 36 ATAGAGCAAT .............................. CCTGGTATTAGCGACTGCATAAACAAAGGAAGGAGG 2544222 30 100.0 36 AGGAAGGAGG .............................. ACGGTACCCGCTCCCCCGAGACCCTGACAATCCCCA 2544288 30 100.0 36 ACAATCCCCA .............................. TCAAAACCTGAGCTTTAAAAAGGCCGTCTTTAAAGA 2544354 30 100.0 37 TCTTTAAAGA .............................. GATAAAACTGGTCGGGGCAGTCCAGCCACACTGCTCT 2544421 30 100.0 39 ACACTGCTCT .............................. CGTAATCGCGTTTTTTGCGTCTTGATGCACTGCGTGTGC 2544490 30 100.0 37 CTGCGTGTGC .............................. AGCTTTCTGCTAAGTAGCAGAAAACTCTAGAAGGAGC 2544557 30 100.0 36 TAGAAGGAGC .............................. CTGCGTGTGCAAGTATATAATGAAGACAGAAAGAGA 2544623 30 100.0 38 CAGAAAGAGA .............................. GGGCGAGGCCCGCAGGAACTGGCAACAGTTTCCTGCTA 2544691 30 100.0 37 TTTCCTGCTA .............................. TCAATCTGCCTATGTTTTTGATAAGGAACATTCTCTG 2544758 30 100.0 36 ACATTCTCTG .............................. CATGTAAGGAGTTAGGTGCCCATCCCCAAAGTTAGA 2544824 30 100.0 39 CAAAGTTAGA .............................. AATACATGCGGTTAGTTAGAATATCCCCGATTCATGAAG 2544893 30 100.0 37 ATTCATGAAG .............................. TTGGTACTCTCGCCGACGGTGGTTCACTCAGACGATG 2544960 30 100.0 36 TCAGACGATG .............................. ATAAAACTGGTCGGGGCAGCATGGCACAATCGGCCT 2545026 30 100.0 36 CAATCGGCCT .............................. CTCGGGTACCCCGCTCGCAAAACCGCACAGACAAAA 2545092 30 100.0 36 ACAGACAAAA .............................. GAAGCGTCAATACGCAGTAGGTTCAGAGCAGAGTTA 2545158 30 100.0 39 AGCAGAGTTA .............................. TTTTCTCTTGAAAGAAGCTGGTTTAACTGGTGTTTACAA 2545227 30 100.0 38 GTGTTTACAA .............................. AAGACTCACTCGCATGCGTTATCATATTGTCAATAGCT 2545295 30 100.0 37 GTCAATAGCT .............................. TGAGCAAGGGTCTTTTAAGTAGGGAGTATATCCCTGC 2545362 30 100.0 37 ATATCCCTGC .............................. GAAAAAAGAGGACTTCCATAGCATTGTGGAAACTCTT 2545429 30 100.0 39 GGAAACTCTT .............................. GGAAGTGCTGTGAAACCGGAAAAGAAAAAGCCTATACCA 2545498 30 100.0 37 GCCTATACCA .............................. AAGACTGCCGAATGGCTTAAAATACAGTTCCCCAAGC 2545565 30 100.0 37 TTCCCCAAGC .............................. CAAAAAATTCAAACAACTCAAATATAAAGCTCTGGAC 2545632 30 100.0 36 AGCTCTGGAC .............................. GACTGGTGCTGTTGGAGGTGTAAACCCTGCAACACC 2545698 30 100.0 38 CTGCAACACC .............................. TAGAGAGGGCAATCCCAGAAGAACAGCAGCAATTTTAG 2545766 30 100.0 36 GCAATTTTAG .............................. CGAAACTGGCGCATTGGGAACGCGGTTAGGTCTATT 2545832 30 100.0 38 TAGGTCTATT .............................. GCACTTAAAATCCTCGAGCGACAAATCAAGCAACAGCA 2545900 30 100.0 38 AGCAACAGCA .............................. TCATAGTCAGGATAATTCAATTGCGAATAAGCATAGCT 2545968 30 100.0 37 AAGCATAGCT .............................. TTGATGAACTTGACAGAAAACTTGGTGGTCTCAGAAA 2546035 30 100.0 40 GTCTCAGAAA .............................. CTTTTTTGCGGGTTGATGTACTGTGTGTGCAGGTGTAAAA 2546105 30 100.0 38 AGGTGTAAAA .............................. ACGGTAACACTCAAAATCAAGCTCCTGCCTCCCAACAA 2546173 30 100.0 37 CTCCCAACAA .............................. AATAGTAAAAAGAAAGGCAAAAGAGGCGAATTGGAAC 2546240 30 100.0 36 GAATTGGAAC .............................. CTCAGAGCGAACGATTTAAGTCAAGTGCGAGAGATC 2546306 30 100.0 35 GCGAGAGATC .............................. GAAAATGTCTTTAAAAGCTTATACAAGAAAAAGTA 2546371 30 100.0 38 AGAAAAAGTA .............................. GAAGCAAAGCTCGTTCTGACAAATGATAGCACTCTGTT 2546439 30 100.0 37 GCACTCTGTT .............................. TCACCCACAGAGCTAGTATAAGCGGAGTTCTGGGGTT 2546506 30 100.0 38 TTCTGGGGTT .............................. TTTGTGGAGGCTTCTGCGTGAAGGCCATAAGAAAGGGC 2546574 30 100.0 37 AAGAAAGGGC .............................. AACAACTTGCGAGGACTAATCGAGATGCCTTACTGAG 2546641 30 100.0 37 CCTTACTGAG .............................. AAATTCACAATTGTAGAAATTATAAATTTGCCCAAAT 2546708 30 100.0 37 TTGCCCAAAT .............................. GTAACATGGGATACACTTACGCCTATCAATCTAACAG 2546775 30 100.0 35 AATCTAACAG .............................. CTTCTATACTAGAATGGGCAGCAGAAAATTTACCG 2546840 30 100.0 36 AAATTTACCG .............................. ATTAACATCAGCGCAAGAACAACCTGTACAAGCTGG 2546906 30 100.0 36 TACAAGCTGG .............................. ATTGCAAGAGATAAAGAGACGCCACCTATTAGACTT 2546972 30 100.0 39 TATTAGACTT .............................. CGTTTAATAATCTCAATTGCCATCCTCTTCTTCCTCCCA 2547041 30 100.0 36 CTTCCTCCCA .............................. AGTAAATGAGAAGATAATTAGTATTTTAAAAGAACA 2547107 30 100.0 39 TAAAAGAACA .............................. CTTTATAAAGAAGGAATAAAAAAAAGGCTATGCCTTAAT 2547176 30 100.0 36 ATGCCTTAAT .............................. ATCTGATACAGCTTTTTCTGGAGAAAAGATAATGGA 2547242 30 100.0 38 AGATAATGGA .............................. GCCCCTCAATATCCCTGTAGAAGACAATTGCTTCTACA 2547310 30 100.0 37 TGCTTCTACA .............................. TTCGAAGTTTATTACATCAAAACTTGTGGCCTCTCTA 2547377 30 100.0 35 GGCCTCTCTA .............................. TTAGCTAATGCAATAGCAATCGCAATTCAAAATAG 2547442 30 100.0 36 TTCAAAATAG .............................. TAAAGCAGGTAAAAATGACATACCTACCATTGCCCA 2547508 30 100.0 36 CCATTGCCCA .............................. CCCTAAAAAGCGTAGCCTTTTTAGCTCCGACAAAAG 2547574 30 100.0 38 CCGACAAAAG .............................. GTGTATCTAAGCCCAAAGGTATCGAGTATGCTGCAACA 2547642 30 100.0 35 TGCTGCAACA .............................. ACTATTTATGTCAGCTCAGGAAAAACCTGTACAGG 2547707 30 100.0 36 CCTGTACAGG .............................. TAAAGCAGGTAAAAATGACATACCTACCATTGCCCA 2547773 30 100.0 36 CCATTGCCCA .............................. CCCTAAAAAGCGTAGCCTTTTTAGCTCCGACAAAAG 2547839 30 100.0 38 CCGACAAAAG .............................. GTGTATCTAAGCCCAAAGGTATCGAGTATGCTGCAACA 2547907 30 100.0 35 TGCTGCAACA .............................. ACTATTTATGTCAGCTCAGGAAAAACCTGTACAGG 2547972 30 100.0 37 CCTGTACAGG .............................. ACTTATCAAGTATTAAAAATAGAGGAGGTATAAAGTA 2548039 30 100.0 36 GTATAAAGTA .............................. CATCTTTTATCTCATATTGCAAACAGAGTTAGAACT 2548105 30 100.0 39 AGTTAGAACT .............................. TCACCTTGCGCTATTGCAAACATTCTTTTTGCCTGCGCA 2548174 30 100.0 38 TGCCTGCGCA .............................. TCTTGCAAAGATTAAAGATGATATGAAACAGCCAATCT 2548242 30 100.0 36 CAGCCAATCT .............................. CTCCCTTTCTCGCTTTTTCTGCCTCCATTTTACACC 2548308 30 100.0 37 ATTTTACACC .............................. TTAATGTTATTGTTGAACAAACTATGGGTCGAACATA 2548375 30 100.0 40 GTCGAACATA .............................. TGGAGGAACACCCTTTTACAGAAAACCAGAAGACATAAAG 2548445 30 100.0 38 AGACATAAAG .............................. TTTCCATAGTCGGGGCCGTCGTGCGCCCGCATGATAAG 2548513 30 100.0 37 GCATGATAAG .............................. GAGCTATAACCCCATGAACAAGGATTTCCCCAGGGAA 2548580 30 100.0 35 CCCCAGGGAA .............................. TCTCTTGAGCAAGACCTCCGCAAGTACATGCCTCC 2548645 30 100.0 36 ACATGCCTCC .............................. ATTTTAACACATGAGTTTGGGCATTTAGTTAATACA 2548711 30 100.0 38 AGTTAATACA .............................. TGTACTGCACGTGCGTACAATACAGCACTAGAAAGAAT 2548779 30 100.0 41 TAGAAAGAAT .............................. CTGCCAGTGTGGCCCTGCTGGAAAATAATGGCTCCACCATG 2548850 30 100.0 38 CTCCACCATG .............................. TTGCCCGGTCAGGCAAGTCCAGAAAAGCATCAAATTCA 2548918 30 100.0 37 ATCAAATTCA .............................. GGAGTAAAAAATGTTGACAGTAAAAGATATTTTAGAC 2548985 30 100.0 37 TATTTTAGAC .............................. ATTCATCAAGAAAACTTACACAGGACTATTTTACAAG 2549052 30 100.0 38 ATTTTACAAG .............................. AAATATTTGCCACGACAAATCCCGACAGCCCTTATCAC 2549120 30 100.0 38 CCCTTATCAC .............................. TGAAGAATGGTTTAAGGAAATAGTCAAAAAGCTTAGGA 2549188 30 100.0 35 AAGCTTAGGA .............................. CCAACCTCCTCTCTAATGTAAGATTTATATCCTCT 2549253 30 100.0 39 TATATCCTCT .............................. ACGTCACGAAGTCATCTACAAAGTAGATAAGAAAATAGA 2549322 30 100.0 36 AGAAAATAGA .............................. ATAGAGGCATGAGAAAAGCGAATTATGCAGTGCTGA 2549388 30 100.0 36 GCAGTGCTGA .............................. CGAAAATGGGCAATGCATAGCATATAAAGAATTTAT 2549454 30 100.0 38 AAGAATTTAT .............................. TAGCTGCAAAAGAAAGAGTGAAAGCCGCAGAGCTACTA 2549522 30 100.0 35 AGAGCTACTA .............................. TAGGACACCGTTTGAGTACCCCGAACTGCTGGATG 2549587 30 100.0 37 CTGCTGGATG .............................. TCGCAATAGGGCCAGAAAATAACTACCTCGAATTCCC 2549654 30 100.0 38 TCGAATTCCC .............................. ACTCCTCCTGCAACGTCTTTTTTGAACTCTTCCAAATC 2549722 30 100.0 36 CTTCCAAATC .............................. GCGGATTAATTCCGTCTCCCTTTAAAAACTTTTGTG 2549788 30 100.0 36 AACTTTTGTG .............................. AAAAATACGAATTAGAAAGACTTATTAAATTAGAAA 2549854 30 100.0 37 AAATTAGAAA .............................. TATTGATTAAAAGGAGTGAGAAGTAGCAGGCTACCGC 2549921 30 100.0 40 AGGCTACCGC .............................. GAATGACGAAGGCTTTACGACAAAGTTCTATGCAACACAT 2549991 30 100.0 37 TGCAACACAT .............................. AAGTAAAACTGATTCTAACAAATGATAGCACTCTGTT 2550058 30 100.0 36 GCACTCTGTT .............................. CTGTGGATAAGTTTGTGGATAACTAGAAAAATATTA 2550124 30 100.0 38 AAAAATATTA .............................. CAAAAGTGAATACCGCATACCGCTTATAACAGAAATAA 2550192 30 100.0 35 ACAGAAATAA .............................. ACTATGAAATTGACTGTTGTGTCTTGACTCCCTGC 2550257 30 100.0 36 GACTCCCTGC .............................. CAGCCCTGAACCTGCACCTTGTGGGCTTATCTGAGA 2550323 30 100.0 37 TTATCTGAGA .............................. TAGGAATAGGAAAATCCACATATAACAGAAAAGAAAA 2550390 30 100.0 38 GAAAAGAAAA .............................. ATAATGTTAAAAATACTAAAAGAAGGGGGCAAAATAGA 2550458 30 100.0 37 GCAAAATAGA .............................. GCTAATCCCTTAACTCGTGAATTTCAAATTCACAAAA 2550525 30 100.0 37 ATTCACAAAA .............................. TATAAAGTAACTTGTTTTAGTCATATCATTTAATATG 2550592 30 100.0 38 ATTTAATATG .............................. GCTTCTCTTTGTTCTGAACTGCTCAATGAATTTCCTAA 2550660 30 100.0 37 AATTTCCTAA .............................. ATTCGCAATTTCAAAATCTTAAAAATTTTTCGAAAAT 2550727 30 96.7 36 TTTCGAAAAT ...G.......................... TAGCAAACGATGAATTTGCGTCAATCATAGAAAAAC 2550793 30 100.0 37 ATAGAAAAAC .............................. TCAAGCGTGCTATAGTTGAACAGGGTCCTGTTATGAT 2550860 30 100.0 38 CTGTTATGAT .............................. GTCATCCTTCGAGGATTCCTGGTATAGGGCAGACCCCG 2550928 30 100.0 40 GCAGACCCCG .............................. TTTCGAAAATTGGGACATGTCTGAAAAATTGCACTTTAGT 2550998 30 100.0 36 GCACTTTAGT .............................. CTTGACCATCCTTTCCTTATTTCCTCAACTTTGCGT 2551064 30 100.0 36 AACTTTGCGT .............................. GCAGAGGCTACCAGTACTGCCGTCATACTGCCAGTA 2551130 30 100.0 37 ACTGCCAGTA .............................. GCTGATATGCCGTACTGGAGTGCTAATGAAATGAGTC 2551197 30 100.0 38 GAAATGAGTC .............................. CCAGTGTGGTTATCATGGAAAATATCGCCACCCACCAG 2551265 30 100.0 36 CACCCACCAG .............................. TTTGTAGGAAAAGCTGGACAGCTCCTTGACAAGGTG 2551331 30 100.0 38 TGACAAGGTG .............................. TCTAGAGCGTTCTCTCTTGAGAATGCTCTGGTGGGAGC 2551399 30 100.0 36 TGGTGGGAGC .............................. AGGTTCTTCCCTGCTCATCCCTGACAAGGTCATCAG 2551465 30 100.0 38 AGGTCATCAG .............................. TGGGTTTAAATTCAATCCACATTATCTTCTGCCTCCCA 2551533 30 100.0 36 CTGCCTCCCA .............................. CATTTGAGGATGCTGTTGAAGAAGAAATTCAAGATG 2551599 30 100.0 37 ATTCAAGATG .............................. ATAAGGAAAATAACAAAAGGTACTATAAAATACAAAC 2551666 30 100.0 35 AAATACAAAC .............................. TTATACATGAGGAGGAGATGGCTAATGTTTAAAAT 2551731 30 100.0 35 TGTTTAAAAT .............................. GGTGTTTTTGTGGAATTTGCACTTCTCGTATTAGA 2551796 30 100.0 35 TCGTATTAGA .............................. AATGCTGGTTTGTAGCTCAGATACTGCGCTTTAAG 2551861 30 100.0 38 GCGCTTTAAG .............................. TTGAGAAGGTTCCACTTATTACTGCAGAGCAGTTAAAA 2551929 30 100.0 36 GCAGTTAAAA .............................. ATTAGATGGTGAATATCACAAAGTAGAGCTTGCAGG 2551995 30 100.0 34 AGCTTGCAGG .............................. ATGCTGGTTTGTAGCTCAGATACTGCGCTTTAAG 2552059 30 100.0 37 GCGCTTTAAG .............................. TAAGAAACGGGAAAGAAGAGCAGGAAGAATATTTCAT 2552126 30 100.0 37 AATATTTCAT .............................. GCATCCCGGATGCTGTTTTTTCTTTTCAGAAAGAATT 2552193 30 100.0 36 AGAAAGAATT .............................. GGAAGGCCTCTTTTACTTCCTGATGAAGTTTTAAAA 2552259 30 100.0 37 AGTTTTAAAA .............................. TCAACATACCCTTTTTCTTGCCATTCCGCATAACTAT 2552326 30 100.0 37 GCATAACTAT .............................. AATAACCTGTTTTGCCTGATACCACTTGATTAGAGGT 2552393 30 100.0 38 GATTAGAGGT .............................. GTTTTTGAGGGTCCTGCCCTCTTTTCTCCCCTCCCATG 2552461 30 100.0 37 CCCTCCCATG .............................. AAATATAGTACGAGATAACCATTTCTGACTTCCACTG 2552528 30 100.0 39 ACTTCCACTG .............................. GTGAAAGTCGGGCCAGCCGAAAGGCTGCTACGCTCAACC 2552597 30 100.0 36 ACGCTCAACC .............................. TAACCGCTAGCAGGGCAAGGTACAGCCCGTGAAAGT 2552663 30 100.0 38 CCGTGAAAGT .............................. TAGAAATAGAAGATTAAAATCAAAAAAAGGTCAAGGGG 2552731 30 100.0 36 GGTCAAGGGG .............................. TCAGAAACGATTCTGAGTCAATTTTAGTCGTTTAAG 2552797 30 100.0 35 GTCGTTTAAG .............................. TTACACCTTCTAAGCCTTATACATTCTAATTTCAA 2552862 30 100.0 37 CTAATTTCAA .............................. GCTAACACCTCAATTACCAGCGAGCAATATTGCCATC 2552929 30 100.0 37 TATTGCCATC .............................. TTGCCGATGAGTACATTTTAACAGTCGAAACACCGAA 2552996 30 100.0 36 AAACACCGAA .............................. TAACTGAAGAAGATATTGAATATATGATGACACATC 2553062 30 100.0 38 ATGACACATC .............................. TCAAAATCATGGGAATAGCTAAATATTATCAAAAAACG 2553130 30 100.0 37 TCAAAAAACG .............................. CTGGAAAGCACATCTGACACGACCGGTGTAATCGACC 2553197 30 100.0 37 GTAATCGACC .............................. TTCATTTATTACTCACACCGACCCTACACGTCATACA 2553264 30 100.0 36 ACGTCATACA .............................. CATACTGCCAACCATACTGGCAAAGTATGGCAACAG 2553330 30 100.0 36 ATGGCAACAG .............................. CTGTTGGAAGCTTCTGTAAAGCGTTTTTCCAGCTTC 2553396 30 100.0 35 TTCCAGCTTC .............................. GTATTAATAATCGTTCTTATTTTCCTTGCAGTATT 2553461 30 100.0 38 TTGCAGTATT .............................. GGTAATATATCAACTCATGATAAAGGGGGTTTTGTAAA 2553529 30 100.0 37 GTTTTGTAAA .............................. CAAATTATCGAACAAATCACTCCAAATGATATAGGAG 2553596 30 100.0 38 GATATAGGAG .............................. GGGATTGTGAAAGTTTTCACAATAGGGTCAAGCTCAGA 2553664 30 100.0 37 CAAGCTCAGA .............................. CAATTTCAACTGCCATATTTTATCACTCCCTTTATAG 2553731 30 100.0 36 CCCTTTATAG .............................. TAACTCTGATATAGATGTAACAACCTGCAGTTCTTT 2553797 30 100.0 36 GCAGTTCTTT .............................. GCAAGTGAAAGCAGGTATAAGAAATTTCATAGTCGT 2553863 30 100.0 36 TCATAGTCGT .............................. GCCCTTTATTCTTTCTCCACCATTTTTTCTCATGCT 2553929 30 100.0 37 TTCTCATGCT .............................. ACAAGTTTTGGAAAAACCCGAAAGCCCACACGGGACA 2553996 30 100.0 38 ACACGGGACA .............................. CAGCTCTGGTGTGCATAATGCAGTTGTGAATGTTCCTA 2554064 30 100.0 37 AATGTTCCTA .............................. ATAGATTGCTTATCAAAGCGCAAACTCCAGCTACAAG 2554131 30 100.0 37 CAGCTACAAG .............................. ACACTCCACGTAAAACAAAAGAATATGAGGAGCTAGT 2554198 30 100.0 38 AGGAGCTAGT .............................. ATAGCACAAATTCTAAATGAGAGGATGAGCGAATGAAG 2554266 30 100.0 36 GCGAATGAAG .............................. GGTGCTTGCAAAAAGGAAAAATCAGAATCGCTGATG 2554332 30 100.0 35 ATCGCTGATG .............................. TTGCACATAATTTTTAACCTTCCTTCTTCAGTGTT 2554397 30 100.0 37 CTTCAGTGTT .............................. GTTGCGTTACTGTAAAGTAAAAACCCTAGAGGCTCGA 2554464 30 100.0 35 AGAGGCTCGA .............................. AAGAAATCGGCTATCTTTTGCAAAGTTTCTAAGTC 2554529 30 100.0 38 TTTCTAAGTC .............................. TTGAAAGCCTTCCTTATCTTTATTTTTTTCATACCATT 2554597 30 100.0 37 TCATACCATT .............................. TTGGTACACCGATATTAAACACAGCTATTACAAATAG 2554664 30 100.0 38 TTACAAATAG .............................. ACTCTTTACCGATGTATTCGTCAAGCACCATTTCAAAA 2554732 30 100.0 36 CATTTCAAAA .............................. CCTTATCCTACGGTTTTGTTTGAGTAGCTGATACAA 2554798 30 100.0 37 GCTGATACAA .............................. TACAGCACCGATTAGCGTAGTATCATATCCATTTAAG 2554865 30 100.0 38 TCCATTTAAG .............................. TAAGAGATGCAAAAGAAAATGAAAAGCCAGCGGTGTTC 2554933 30 100.0 37 AGCGGTGTTC .............................. AAGACATACGTAAAGAGAAAAATTAGAGAATTAAAGA 2555000 30 100.0 37 GAATTAAAGA .............................. GCTACTTATGCGATTAAGATATATACAAGGTAAAGAT 2555067 30 100.0 AGGTAAAGAT .............................. ACGTTCAAAT ========== ====== ====== ====== ========== ============================== 217 30 37 GTTTCAATCCCTCTTAGGTAGGCTAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.50,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [129,500] Score: 0.18/0.18 # # Final direction: R [0.41,5.32 Confidence: HIGH] >NC_003901 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 4089310 37 100.0 36 NNNNNNNNNN TC................................... TTTCTCGCATTTCATCAGTTATCTTTATCTCGATCA 4089383 37 100.0 37 NNNNNNNNNN ..................................... GGGAAGGCTGGCTTCAGACATCAAGAAGGAATGAGTT 4089457 37 100.0 37 NNNNNNNNNN ..................................... GCTTTAGAAATATAAACATTTCCTGCTGTCGTGTCTA 4089531 37 100.0 37 NNNNNNNNNN ..................................... GGGAAGGCTGGCTTCAGACATCAAGAAGGAATGAGTT 4089605 37 100.0 37 NNNNNNNNNN ..................................... GCTTTAGAAATATAAACATTTCCTGCTGTCGTGTCTA 4089679 37 100.0 36 NNNNNNNNNN ..................................... AAGGCTATGTACCAATTCCATTAATTACAGGTACAA 4089752 37 100.0 35 NNNNNNNNNN ..................................... GGATATTCAACAGAAGAGGCAAGAAAATATGTTCA 4089824 37 100.0 37 NNNNNNNNNN ..................................... TTGTCTAAAAGCCAGGATCTTGACAGTGGATTCTCAA 4089898 37 100.0 38 NNNNNNNNNN ..................................... ATATTTGCATCTTCGAAGGCATTTTTCATTATATCAGA 4089973 37 100.0 38 NNNNNNNNNN ..................................... GGTATTTTCGAACTTCAAAACTGTATAACGCCAGTATC 4090048 37 100.0 34 NNNNNNNNNN ..................................... TTATACTACAGCGGCAGGAGGAGGAGCCGGGCGA 4090119 37 100.0 38 NNNNNNNNNN ..................................... TCTACTCTCCTGAATAGATTTACATCTTCCAGGGATAA 4090194 37 100.0 36 NNNNNNNNNN ..................................... ACATGACAGCAACAGACGCAGGAGATATAAGGATCG 4090267 37 100.0 37 NNNNNNNNNN ..................................... TGATTTGTGCTTTAGATTCCCATTGTGCTTTCAATGC 4090341 37 100.0 36 NNNNNNNNNN ..................................... TAGATTCAGCGTGATCAAACCGAGTTCTTTTAGAGT 4090414 37 100.0 38 NNNNNNNNNN ..................................... TTCGTAAGTATATGTATTCAATCGCGAAAACAGTCAGT 4090489 37 100.0 38 NNNNNNNNNN ..................................... TAGTATATCCTTAAAGTACGTCGTTTATAGTATATCCT 4090564 37 100.0 37 NNNNNNNNNN ..................................... ACTTTAAGGATATACTATATGTGCGTGGTCTAGCGCT 4090638 37 100.0 34 NNNNNNNNNN ..................................... AGGACGCTCGACGCGTTCGACCAGGCGAACCGGA 4090709 37 100.0 37 NNNNNNNNNN ..................................... TTTTCGAAGGTTGTCCGGAAAATTAAGCGAAGCTTTA 4090783 37 100.0 37 NNNNNNNNNN ..................................... ACGGTGTACCTTTAACGTATACACTATAAGGTATATC 4090857 37 100.0 35 NNNNNNNNNN ..................................... ATTACATCCGCGACGAGATCGAAGGTGAGTTGAAA 4090929 37 100.0 35 NNNNNNNNNN ..................................... TGTAAAAATTCCAGTAAATCCCATCCTTATCTATA 4091001 37 100.0 38 NNNNNNNNNN ..................................... AACGAAATGCGGAAAACGCTTCGGATGTGAAAACGTGG 4091076 37 100.0 35 NNNNNNNNNN ..................................... TTCGGGCATTTTTGGGGTCTAGCAGAAACACTTTA 4091148 37 100.0 35 NNNNNNNNNN ..................................... ACGACTGTCTACGAAAATGTTTGGCGACATGGGAG 4091220 37 100.0 34 NNNNNNNNNN ..................................... AAAGAGAAAGCTGTTACTGAAACCTTGCAACTTA 4091291 37 100.0 35 NNNNNNNNNN ..................................... GCATACCATTGATCTCAGCCTTGCAGCCCTATCGT 4091363 37 100.0 41 NNNNNNNNNN ..................................... GCAATACAGCTACAAACAGGAGGGCATAGCCGGTAATTTAT 4091441 37 100.0 35 NNNNNNNNNN ................A.................... GTCTTCCTTTATCAAGTTTATAAGCTTTCATGTTT 4091513 37 100.0 36 NNNNNNNNNN ..................................... TGTTTAATAGATCAATCCAGGTTTCGCCCTTTTTTC 4091586 37 100.0 36 NNNNNNNNNN ..................................... ATGGAATTAGAAAAGAGGGCGGGACGAGACAGGAAA 4091659 37 100.0 35 NNNNNNNNNN ..................................... CATTATCTCAAAATCCCTCTTGACCAAATGACCCC 4091731 37 100.0 35 NNNNNNNNNN ..................................... TCATGCATTTCAGAAAGGGATTTAGCAGCACAGTC 4091803 37 100.0 35 NNNNNNNNNN ..................................... TTTTGCTCTGATATGTGGCCTGTTTTCTTGTGTCT 4091875 37 100.0 35 NNNNNNNNNN ..................................... GAGCCGGCAGGACTGCCCCCACTCTCGCCGCGATT 4091947 37 100.0 38 NNNNNNNNNN ..................................... CTGGTTCTGGCTTGCGAGGCTTATTTATAATCCGAGCT 4092022 37 100.0 35 NNNNNNNNNN ..................................... GTTTTTTCTCCGCGCATAAATTATTGACATAATAA 4092094 37 100.0 38 NNNNNNNNNN ..................................... TAGGCGAAAAGCTGTTCGGGAACTCAACAACTGATGAT 4092169 37 100.0 36 NNNNNNNNNN ..................................... CCCTCAGAGAAATGCATGAAGCAATTGCCGAATTCA 4092242 37 100.0 34 NNNNNNNNNN ..................................... CTGGCGGTGTATGATCCTAAATTAATTGGGTATG 4092313 37 100.0 35 NNNNNNNNNN ..................................... TACTAAGGGTACTGATTATAAGACATTCTGTGAAA 4092385 37 100.0 48 NNNNNNNNNN ..................................... ACCTGCTGATTTAGCGCAGTTTGTAGACCCTCTTAAAGAATGGTTTAC 4092470 37 100.0 35 NNNNNNNNNN ..................................... CGCTTCAAACCCTGGAGGGGTGGGCCACGAATGGG 4092542 37 100.0 36 NNNNNNNNNN ..................................... ATAAAAAAATAGAACAGAAGGAAGCATTAGAATTTG 4092615 37 100.0 35 NNNNNNNNNN ..................................... ATTAATGTAACAAATAATAATCTAACTCTTAAAGA 4092687 37 100.0 36 NNNNNNNNNN ..................................... GTATTTTCTTTATTACTGATATGATCATTGTCCGGT 4092760 37 100.0 35 NNNNNNNNNN ...C................................. CACTTTCTTCTTGAAATGGGTTCATTTCTTTAGAA 4092832 37 100.0 36 NNNNNNNNNN ..................................... GCGAGAACCAAGCTATTGCACTGGAAACTCTGAATG 4092905 37 100.0 36 NNNNNNNNNN ..................................... GAAATTATGTTTGCTGATGATGTAGTTACTGGGCCA 4092978 37 100.0 34 NNNNNNNNNN ..................................... CAGCTATCATGTGTGGATTACTTCATGATATCTG 4093049 37 100.0 33 NNNNNNNNNN ..................................... GAGATCTCGAAATAAGAACTTATCCATTTTTAA 4093119 37 100.0 35 NNNNNNNNNN ..................................... AAAAAGTGATCCCGAAGCCGATCAATGGGAGGTAA 4093191 37 100.0 35 NNNNNNNNNN ..................................... GAAAAGCACGCCAAGAGACGCGCAGCTCAGAAATT 4093263 37 100.0 36 NNNNNNNNNN ..................................... TTAGGTTGTTCTGGTTCTTCAAAAGACTCAACCGGG 4093336 37 100.0 35 NNNNNNNNNN ..................................... ACTTTACCCCGGCTATCTTCATTCGATCCCTCTTT 4093408 37 100.0 36 NNNNNNNNNN ..................................... TTGGCTGCGTACGGAGTCGAATAGGACAACCTAACA 4093481 37 100.0 37 NNNNNNNNNN ..................................... TTCTCAGCTTCTTCATGAGTCATAGGCATTGAAGCTG 4093555 37 100.0 34 NNNNNNNNNN ..................................... ACGAATTCGCGAGAGAGTATTCAGAGACGTATCA 4093626 37 100.0 35 NNNNNNNNNN ..................................... GATACAGCCCGTCAACCCGCGAGTGCAGGAATTTT 4093698 37 100.0 34 NNNNNNNNNN ..................................... AAAACAATGGTAAACGAACTCATCTTACAAGCAG 4093769 37 100.0 36 NNNNNNNNNN ..................................... AGACAACGCAAAAATGACAACGTTTTTAATTTGGTA 4093842 37 100.0 35 NNNNNNNNNN ..................................... CCAACAACGCCCAAGCGCAGCCGCCGGAAACCTCG 4093914 37 100.0 36 NNNNNNNNNN ..................................... CAAAATTGCCCTTTGATATGATTCTGTCAATGTCCG 4093987 37 100.0 36 NNNNNNNNNN ..................................... CAGAGGTTGAATGAACGGAAAACAGCATGAAACCCT 4094060 37 100.0 34 NNNNNNNNNN ..................................... ATGGTGTTGTCTGATACTGTGTTGCACTGCAAGT 4094131 37 100.0 32 NNNNNNNNNN ..................................... ATTGCTATAGATGTCTCCCCCGACAACATCTA 4094200 37 100.0 35 NNNNNNNNNN ..................................... ACCCCACAAGTAAAATTAGGTGATTATGTTTATGT 4094272 37 100.0 34 NNNNNNNNNN ..................................... CTTATATCAGAGATTATTCTGATTCTGGTAGAGC 4094343 37 100.0 36 NNNNNNNNNN ..................................... ACTCTTTACTGTCTGTATAGTGTGGTTTCTCTTCAA 4094416 37 100.0 34 NNNNNNNNNN ..................................... TTTTATAATAATGCTAAACTCACGGGAAACGGCG 4094487 37 100.0 36 NNNNNNNNNN ..................................... CCGGCACCGTTTTAGACGGGCAAGGACAGGCAACAA 4094560 37 100.0 35 NNNNNNNNNN ..................................... GGTTCATTCCTTTTTCTCCTTCTCTTATTGCATAT 4094632 37 100.0 34 NNNNNNNNNN ..................................... CTTGAGAACGGAACAGCTTATGCGGTTTTTACCG 4094703 37 100.0 36 NNNNNNNNNN ..................................... CGGCGCGTGCTGTTATGATGAAGTAATATTCATCTC 4094776 37 100.0 37 NNNNNNNNNN ..................................... TATGTTATGTTCTTTCAGATAGTCAAGATCTTCTTTG 4094850 37 100.0 39 NNNNNNNNNN ...............................T..... ACCCGTCGACTACTTGACAAGAGAAGAATTGGACACTCT 4094926 37 100.0 35 NNNNNNNNNN ...............................T..... AAAAACTAATAAAAATAAATATGTTAAGGTGTTTA 4094998 37 100.0 35 NNNNNNNNNN ...............................T..... AATGAAAATCCGCAAGGATCTCATACGTGAATTAG 4095070 37 100.0 44 NNNNNNNNNN ...............................T..... TAGAGCGGTCACTCCGAGCAGGACAAGAGCAAGGAGGGTCTTTT 4095151 37 100.0 1 NNNNNNNNNN ...............................T..... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 81 37 36 GTTTCAATCCTTGTTTTAGTGGATCTTGCTCACGAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.16%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.90,-2.90] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [50.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [222,211] Score: 0/0.18 # # Final direction: R [0,5.18 Confidence: HIGH] >NC_003901 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 679199 37 89.2 35 TAACAAAAGC --................G...........T...... AGAAGTCCAAGTAGAGAACGGTCTCCAAATCCATT 679271 37 100.0 36 CAAATCCATT ..................................... TCTATACGAAAATGAAATATTGACTGATGAAAGTAT 679344 37 97.3 36 ATGAAAGTAT ..................G.................. CCGTTTTTATACCTGTTAATATAGGACGTATACATT 679417 37 97.3 35 CGTATACATT ..................G.................. CAGTGGGTCCGACTGGCTTTAGTGGTCTCCTCAGA 679489 37 97.3 34 TCTCCTCAGA ..................G.................. CCAACCAGTTAATACGATGTGTTACGAGGATGGT 679560 37 97.3 37 CGAGGATGGT ..................G.................. CCGAAAGTTGCAGCCCTCAAAACCTTCGTCGACCTGA 679634 37 97.3 35 GTCGACCTGA ..................G.................. CCCTGAGCCTGTAACAGAGCTTGAAAGATAATAAG 679706 37 100.0 36 AGATAATAAG ..................................... CGACTGGAAACCTGCCGATATCATTTTATTCGGAAG 679779 37 100.0 36 TATTCGGAAG ..................................... CAGTGGGCGCGGAAAGAGTAATTCCCGCCACTTATA 679852 37 100.0 38 GCCACTTATA ..................................... AGCTAAAGCATTGAAAGCTTTCAGGCTTAGTGAGGCAG 679927 37 100.0 37 AGTGAGGCAG ..................................... TTGCCGATTACATGAAGGAGCACAGCAGGGACGATTT 680001 37 100.0 36 GGGACGATTT ..................................... TAATAGGATCATTGATGCAGAAATCTCCTGAGAGTA 680074 37 100.0 43 CCTGAGAGTA ..................................... CTGTTCCCGCGCTGGCAAGAGTCACCGAGGAAAATATCAAAAA 680154 37 100.0 36 ATATCAAAAA ..................................... AAATAATGCCCGCCTTCGTGAAACCAGAGCACGATG 680227 37 100.0 36 GAGCACGATG ..................................... CCCAATTTCTCAGTTTGAGAGAGAGAGTTATTTTTT 680300 37 100.0 34 GTTATTTTTT ..................................... AAAGCCTTTTTGCTGATAATCAGGAAGAGGTGGA 680371 37 100.0 37 AAGAGGTGGA ..................................... AAAGATCTGAAATCAAATAAAATCAATGAGAAAAGCA 680445 37 100.0 35 GAGAAAAGCA ..................................... TAACATCTCTATAGCCTATGGCTTTTGTATTTCCA 680517 37 100.0 37 TGTATTTCCA ..................................... ATAGTAGAGGCTATCCGATCCTCTAGGGGTTTATCAA 680591 37 100.0 36 GGTTTATCAA ..................................... GACAGCTTAACCCGTTCCTGAATGAGGCTTATCTCA 680664 37 100.0 35 GCTTATCTCA ..................................... GCTTGATCTTCTATTGACACGTTGAATGTACTTGA 680736 37 100.0 36 ATGTACTTGA ..................................... AGGTCACAGAGAGAATCAAAAATACAGTTAGAATTG 680809 37 100.0 36 GTTAGAATTG ..................................... TTTCTCAGATCCTTGCAGGGAAAGATAAGGCTATAA 680882 37 100.0 35 AAGGCTATAA ..................................... TTGTATGTGTACACATGGTGTACACATAAGGCGAA 680954 37 100.0 36 ATAAGGCGAA ..................................... AGGAAAATGTTATATCAACGAAAGAACGCGGAGGAA 681027 37 100.0 36 CGCGGAGGAA ..................................... AGTGACCTGATAGACGTAAGGAGCAATCTTCGCGGC 681100 37 100.0 38 TCTTCGCGGC ..................................... GCGACGATCACACCCATAAAAAAGTTTAACCAACTTTC 681175 37 100.0 34 ACCAACTTTC ..................................... GGTTTGTGGGGCATTGGGTGTGTCAGCATGATAG 681246 37 100.0 36 AGCATGATAG ..................................... ACGACGACTCTGACGGCATAGGGGACGTATGGGGAA 681319 37 100.0 37 GTATGGGGAA ..................................... AGATTTCTTTTACCAATAGGATACGAAAACTGTTCAA 681393 37 100.0 37 AACTGTTCAA ..................................... GGCGATAAGATGAAAAGAAACTCAACTCAAGTTAGTT 681467 37 100.0 35 CAAGTTAGTT ..................................... TGATGAATTAAATCAAATTCCTTTCGATTTTTCGG 681539 37 100.0 36 GATTTTTCGG ..................................... CATCAAAAATTAGCCCGTCTTTATCCCCATAAGGAA 681612 37 100.0 37 CCATAAGGAA ..................................... TAATTTGATAATACCTTAATCAACTCACTTTTCTCAA 681686 37 100.0 38 CTTTTCTCAA ..................................... TATCCGGGGGCAGGAGAGCACGAGGAGGGCCAGAAGAG 681761 37 100.0 35 GCCAGAAGAG ..................................... ACGTTTTCTTTTGTTCTTCCGAGGACAAGCCCGAT 681833 37 100.0 37 CAAGCCCGAT ..................................... AAGGATTCTTCAGTATTATTGCCGTCGTCCTGATCCT 681907 37 100.0 35 TCCTGATCCT ..................................... CTGAAAATATACTTTGAGCCCGCCAGCAAACGAAA 681979 37 100.0 34 GCAAACGAAA ..................................... ATAACAATCATCTGCCGAAAACTGCATAGAATTG 682050 37 100.0 36 CATAGAATTG ..................................... ATTTGCAGGTGCAACAACGTTACAGGGTGGAGAAAT 682123 37 100.0 39 GTGGAGAAAT ..................................... ATGAACAAGATGTAAATAAAGAAAATAAAGCTCTAAAAA 682199 37 100.0 38 GCTCTAAAAA ..................................... TTTATAGTGTTTTTCAGTGGATAGGTGTCACCTTTTAC 682274 37 100.0 37 CACCTTTTAC ..................................... CATGATAATCACTATATGAGATTATGTGTTTAAAGTA 682348 37 100.0 36 GTTTAAAGTA ..................................... AGTCCATCGTGCCCTGGAGTATTGAAAATGCAGTTG 682421 37 100.0 37 AATGCAGTTG ..................................... ATAATAAACCGAAAAGCGGTGTTAAGTCAGGATATTA 682495 37 100.0 CAGGATATTA ..................................... AGGGCAAAAA ========== ====== ====== ====== ========== ===================================== 46 37 36 GTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.16%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.90,-2.90] Score: 0/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [342,112] Score: 0.18/0.18 # # Final direction: R [0.18,4.91 Confidence: HIGH] >NC_003909 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================== ====== 1551421 26 100.0 28 NNNNNNNNNN .......................... GGTAGCGCCGGTAGCGCCCGCCGGTCCT 1551475 26 100.0 19 NNNNNNNNNN .......................... AGTAGCACCTGCAGGTCCT 1551520 26 100.0 1 NNNNNNNNNN .......................... NNNNNNNNNN ========== ====== ====== ====== ========== ========================== 3 26 23 TGAACGCCTTGAGGTCCTTGAGGCCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.40,-0.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [31.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [833,1078] Score: 0/0.18 # # Final direction: R [0.37,0.64 Confidence: LOW] >NC_003909 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 4310484 20 100.0 25 NNNNNNNNNN ....GG..G...GAA..... TGAACCCGTCGCTCCCGTTGGACCC 4310529 20 100.0 34 NNNNNNNNNN ............GAA..... TGCTCCCGTTGAACCTGTTGCTCCCGTTGAACCT 4310583 20 100.0 52 NNNNNNNNNN .................... TGCTCCGGTTGGACCCGTTGAACCTGTTGCTCCCGTCGCTCCTGTTGAACCT 4310655 20 100.0 52 NNNNNNNNNN .................... CGCTCCGGTCGGACCTGTTGCTCCGGTTACTCCCGTCGCTCCGGTTGGACCT 4310727 20 100.0 52 NNNNNNNNNN .................... CGCTCCGGTCGGACCCGTTGCTCCCGTTATTCCTGTCGCTCCGGTCGGACCT 4310799 20 100.0 52 NNNNNNNNNN .................... CACTCCCGTTGGACCTGTTGCTCCCGTTATTCCTGTCGCTCCCGTTGGACCT 4310871 20 100.0 34 NNNNNNNNNN .............C...... CGCTCCCGTTACTCCTGTCGCTCCCGTTACTCCT 4310925 20 100.0 70 NNNNNNNNNN ..C..........C...... CGCTCCCGTTACTCCTGTCGCTCCCGTTGGACCCGTTGCTCCCGTTATTCCTGTCACTCCCGTTGGACCT 4311015 20 100.0 52 NNNNNNNNNN .............C...C.. CACTCCGGTTGGACCTGTTGCTCCCGTTATTCCTGTCGCTCCCGTTGGACCC 4311087 20 100.0 34 NNNNNNNNNN .................... CGCTCCCGTTGAACCTGTCACTCCCGTTGGACCT 4311141 20 100.0 25 NNNNNNNNNN .................... CACTCCCGTTGGACCTGTTGCTCCC 4311186 20 100.0 34 NNNNNNNNNN .................... CACTCCGGTTGGACCTGTTGCTCCCGTTGGACCC 4311240 20 100.0 34 NNNNNNNNNN ..C..C..A...GGA..... CGCTCCCGTTGGACCCGTTGCTCCCGTTGGACCT 4311294 20 100.0 1 NNNNNNNNNN ..C.........GGA..C.. NNNNNNNNNN ========== ====== ====== ====== ========== ==================== 14 20 42 GTTGCTCCCGTTATTCCTGT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [9-13] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [55.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [615,496] Score: 0/0.18 # # Final direction: F [0.68,0.37 Confidence: LOW] >NC_003910 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 3967485 20 100.0 37 NNNNNNNNNN ..............A..... CTCTGCGGTATCATTGATAGAATCAAGTAATGCATCG 3967542 20 100.0 49 NNNNNNNNNN ........A........... ATCAACTGGCTCATTCACTGATTCATTTACCGAATCAAGCAGCGCATCA 3967611 20 100.0 37 NNNNNNNNNN ...........A........ CTCTGCGGTATCATTGATAGAATCAAGTAATGCATCG 3967668 20 100.0 49 NNNNNNNNNN ...A....A........... ATCAACTGGCTCATTCACTGATTCATTTACCGAATCAAGCAGCGCATCA 3967737 20 100.0 37 NNNNNNNNNN ...........A........ CTCTGCGGTATCATTTATAGAATCAAGTAATGCATCG 3967794 20 100.0 49 NNNNNNNNNN .................... ATCAACTGGCTCATTCACTGATTCACTTACTAAATCAAGCAGCGCATCA 3967863 20 100.0 37 NNNNNNNNNN ...........A........ CTCTGCGGTATCATTTATAGAATCAAGTAATGCATCG 3967920 20 100.0 49 NNNNNNNNNN .................... ATCGACTGACTCATCCACTGATTCACTTACCGAATCAAGCAGCGCATCG 3967989 20 100.0 37 NNNNNNNNNN ...........A........ CTCTGCGGTATCATTTATAGAATCAAGTAATGCATCA 3968046 20 100.0 49 NNNNNNNNNN .................... ATCAACTGGCTCATTCACTGATTCACTTACCGAATCAAGCAGCGCATCG 3968115 20 100.0 37 NNNNNNNNNN ...........A........ CTCTGCGGTATCATTTATAGAATCAAGTAATGCATCA 3968172 20 100.0 49 NNNNNNNNNN .................... ATCAACTGGCTCATTCACTGATTCACTTACCGAATCAAGCAGCGCATCG 3968241 20 100.0 49 NNNNNNNNNN .................... CTCTGCAGTCTCATTGTCTGGTTCACTTACCGAATCAAGCAGCGCATCA 3968310 20 100.0 49 NNNNNNNNNN ..............C..... CTCTGCTGGCTCATTGTCTGAATCACTTAGTGAATCAAGCAGCGCATCA 3968379 20 100.0 1 NNNNNNNNNN ..............C..... NNNNNNNNNN ========== ====== ====== ====== ========== ==================== 15 20 43 ATATCATCTGGGTCTGTTAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [1500,1819] Score: 0/0.18 # # Final direction: R [0,0.41 Confidence: MEDIUM] >NC_003919 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 4522475 31 100.0 37 CTAAGGGGGG ............................... AAATGCTTTCGACGCGCATAAAGCGCTGGCGCAGGAG 4522543 31 100.0 35 GGCGCAGGAG ............................... CTGTTCAAGCTCCGCCGCCTGATCCGCTTGCCGAG 4522609 31 100.0 34 GCTTGCCGAG ............................... CTCGGGTTTCGGGATGTGCTTCAGATCTGCGTCG 4522674 31 100.0 35 ATCTGCGTCG ............................... CGCTGCACGGATGCGCCAGGCGGCGAGGCGATCAT 4522740 31 100.0 36 AGGCGATCAT ............................... TCGAGCGCATCGATGACGGTCACCCATCCCCCAATG 4522807 31 100.0 36 TCCCCCAATG ............................... GTGCCACCGACAGCGACGCACGTGGACCTGCAGATC 4522874 31 100.0 34 CCTGCAGATC ............................... CTCTCTCACGCCGCGCGTGCGAGATCCTGCGTGC 4522939 31 100.0 36 TCCTGCGTGC ............................... GCAGACTGCCGAGGCCGGCATGCTGGAGGGGCGCCT 4523006 31 100.0 37 AGGGGCGCCT ............................... GGGTTAACAACGCCTTGAAACGGCTTTGCCGCGACGC 4523074 31 100.0 35 GCCGCGACGC ............................... GCCATCATGCTTTGAATGCGCTTACCCACGGCGAA 4523140 31 100.0 35 CCACGGCGAA ............................... GCGGATATGTGATTAGACCCTTTTACGACTTTCAG 4523206 31 100.0 34 CGACTTTCAG ............................... TCATTGAACCCAAGGACCACTTCGCAGGGCGACT 4523271 31 100.0 34 CAGGGCGACT ............................... TGTCGAGCGCGCACTGCTGCCGCGATGGCCGGAA 4523336 31 100.0 34 ATGGCCGGAA ............................... GGCTGGGAGCGTTACAAGTTTGAGCAGCCCGTAG 4523401 31 100.0 35 CAGCCCGTAG ............................... TGGTTCAGGGCTGGAAAGACTTGGATGCCCGCATC 4523467 31 100.0 34 TGCCCGCATC ............................... CTGACTATCCCTGCATAGGCCACGACCTGCGAGG 4523532 31 100.0 34 ACCTGCGAGG ............................... CTGAGTTCGTCGCCGTCCCGGTCGTCTGACGCGT 4523597 31 93.5 36 TCTGACGCGT T...........T.................. CATGCCATATGCGGCGAGATCGCACAGCAGAAGGAA 4523664 31 96.8 GCAGAAGGAA .G............................. AATTTAAACT ========== ====== ====== ====== ========== =============================== 19 31 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [5,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-6.90,-7.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [46.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [195,132] Score: 0/0.18 # # Final direction: F [5.68,0.37 Confidence: HIGH] >NC_003911 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================== ====== 2126117 22 100.0 86 NNNNNNNNNN ....G.....T........... GACCAACGAAGGCGACGAGGGCGACGAGGACGACGAAGGCAACGAGCACGACGAAGGCAACGAAGGCAACGAAGGCAACGAAGATA 2126225 22 100.0 77 NNNNNNNNNN ...................... ACAGAACGAAGCCGACGGCGGCGACGAAGGCGACGAAGGTAACGAAGGCAACGAGGGCAACGAAGGCAACGAGGACA 2126324 22 100.0 86 NNNNNNNNNN ...................... GGGTAACGAAGGCGACGAAGCCGACGAGGGCGACGAAGACAACGAGGGCAACGAGAACGACGAAGGCAACGAGGCCGACGAAGGCG 2126432 22 100.0 50 NNNNNNNNNN ...................G.. AGGCAACGAGGACAACGAAGGTAACGAAGGCGACGAAGGCGACGAAGGCG 2126504 22 100.0 65 NNNNNNNNNN ...................... GGACGGCGGCGACGAAGGCGACGAAGGCGACGAGGGGAACGAAGGCAACGAGGGCAACGAGGGCA 2126591 22 100.0 41 NNNNNNNNNN ....G..T.........A.... GGACAACGAAGGTAACGAAGGCGACGAAGCCAACGAGGGTG 2126654 22 100.0 32 NNNNNNNNNN ....G...G............. GGGTAACGAGGGCGACGAAGGTAACGAGGACG 2126708 22 100.0 20 NNNNNNNNNN ...................... GGGTAACGAGAACGACAACG 2126750 22 100.0 41 NNNNNNNNNN ........G............. GCAAGACGAAAACGACGAAAACGACGAAGGTGACGAGGCCG 2126813 22 100.0 23 NNNNNNNNNN ...................... AGACGACGAAGGCAACGAGGACA 2126858 22 100.0 35 NNNNNNNNNN ...................... GTCCGGCGACGAAGGTGATGAGGGCGACGAAGCTG 2126915 22 100.0 23 NNNNNNNNNN ...................... AGACAACGAAGGCAACGAAGGCG 2126960 22 100.0 38 NNNNNNNNNN ...................... AGGCAACGAAGACGGCGGCGACGAAGGCGACGAAGACA 2127020 22 100.0 53 NNNNNNNNNN ..............A....... GGACGACGAAGGCGACGAAGGCGACGCCAGCGATCCCTATGACAATGAGGGCG 2127095 22 100.0 62 NNNNNNNNNN ....G........G.A...... AGGCGACGAGGACGACGAGAGCAATGAGGGCAACGAAGGCCCCCAGACCGACGATGAGGATG 2127179 22 100.0 41 NNNNNNNNNN ...................T.. AGGCAACGAAGAAATAGAAGGCCAGGAAGACGACGAGGACG 2127242 22 100.0 32 NNNNNNNNNN ........G............. GGATAACGAGTGGGACGAGGATAACGAGGACG 2127296 22 100.0 23 NNNNNNNNNN ........G......C...... AAACGACGAGGACGACGAAGGCA 2127341 22 100.0 32 NNNNNNNNNN ........G......C...... GGACGACGAAGACAACGAAGACGACGAAGGCA 2127395 22 100.0 23 NNNNNNNNNN ........G......C...... AAACGACGAAGACAACGAATTCG 2127440 22 100.0 50 NNNNNNNNNN ........G.......T..... GGGCAACGAGGGCAACGAGGGCGACGAAGACGACGAATTCGACGAGGGCG 2127512 22 100.0 44 NNNNNNNNNN ........G............. GGGCGACGAAGGTAACGAGGGCGACGAGGGCCAGATCGACGGCG 2127578 22 100.0 41 NNNNNNNNNN ......A.G............. AGATGACGAAGCCGACGAAGGTGATGAAGGCGACGAAAGCG 2127641 22 100.0 32 NNNNNNNNNN ...................... AACCAATCTGAACGACGAAAACGACGAGGGTG 2127695 22 100.0 32 NNNNNNNNNN ....G..T.............. GGACGACGAGTTCGACGAAAACGACGAATTCG 2127749 22 100.0 32 NNNNNNNNNN ....G..T.........A.... AGGCGACGAAGACGACGAATTCGACGAAGGCG 2127803 22 100.0 50 NNNNNNNNNN ....G.A.G............. GTCCGACGAAAGCGACGAGCACGACGAAAACGACGAAGGCGACGAAGGCG 2127875 22 100.0 38 NNNNNNNNNN ....GTA.G............. AGGCGACGAGGCCGAAACCGGCACCGGCGATGACGGTG 2127935 22 100.0 32 NNNNNNNNNN ....G.....T.....T..... AGCCGATATCGACAATCGTGGCGACGAAGGCG 2127989 22 100.0 23 NNNNNNNNNN .....AA.G.......T..... AGCCGACGAAGGCGACGAAGCCG 2128034 22 100.0 32 NNNNNNNNNN ....GCA.G.......T..... AGGCAACGAAGGTGACGAAGCCGACGAAGGCG 2128088 22 100.0 41 NNNNNNNNNN ....G.A.G......C...... AGATGACGAAGGCGACGAAGACAACGAAGGTGACGAAGCTG 2128151 22 100.0 41 NNNNNNNNNN ......A.G.....AA...... GCACGACGAATATGATGAAGGCGACGAATCTGACGAGGACA 2128214 22 100.0 32 NNNNNNNNNN ....G.A.G......A.A.... AGGCAATGAAGGCAATGAGAACGACGAGCTCG 2128268 22 100.0 50 NNNNNNNNNN .......TG........A.... GGGCGATGAAAACGACGAAGGCAACGAATTCGATGAAGGCGGCATAGACG 2128340 22 100.0 41 NNNNNNNNNN ....G..TG............. AGACGACGAGGGCGACGAAAACGACGAGGACGACGAAAACA 2128403 22 100.0 32 NNNNNNNNNN ........G......A...... AAACGACGAATACGACGAAGGTGACGAAGCCG 2128457 22 100.0 41 NNNNNNNNNN ........G.....AA...... AGACGACGAAAACAACGAAGGCGACGAAAACAACGAGGATA 2128520 22 100.0 32 NNNNNNNNNN .....AA.G.....AA...... GTTCGACGAAGAAAACGAAGGCAGCGAAGGCG 2128574 22 100.0 59 NNNNNNNNNN ......A.G......C...... AGGCGACGAAGACGACGAAGGCGACGAAGCCGACGAGTATGACGAAGGCGACGAAGGCG 2128655 22 100.0 59 NNNNNNNNNN ......A.G............. AAACGACGAGGACGACGAAGGTAACGAAGAAAACGAGGTCCACGACGACAACGACGGCG 2128736 22 100.0 86 NNNNNNNNNN ........G............. AGGCAACGAAGGAGACGAAGGAGACGAAGGCAACGAAGGCAACGAGGGCGACAGCCAGGCCGATGCCAACGAAGGAGATGAGGGAG 2128844 22 100.0 50 NNNNNNNNNN ......A..........A.... AGGTGACGAAGGCGACGAAGACGACGAAGGCAATGAAAACGACGAAGGCG 2128916 22 100.0 1 NNNNNNNNNN ........G............. NNNNNNNNNN ========== ====== ====== ====== ========== ====================== 44 22 43 ACGAAGGCAACGAAGGCGACGA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [9,] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [13-50] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [33.3-35.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [475,534] Score: 0/0.18 # # Final direction: F [0.78,0 Confidence: HIGH] >NC_003919 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================= ====== 27399 17 100.0 37 TATGGCGCCC ................. TCCATCGAGATCGGTGCCGGTGCGCAAACCAAGAACG 27453 17 94.1 37 ACCAAGAACG .......C......... GGCATCCGCATCGGCGACAACGCGCGTACCGGTGGCG 27507 17 100.0 40 ACCGGTGGCG ................. TCGATCACGCTGGGCCAGAAAGTGACGGTGTCCGGCGGGC 27564 17 94.1 TCCGGCGGGC .............T... AGCATCCTCGC ========== ====== ====== ====== ========== ================= 4 17 38 TGGAAACGGTCAACGGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [38.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [283,517] Score: 0/0.18 # # Final direction: F [1.05,0 Confidence: HIGH] >NC_004088 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1291480 28 100.0 34 NNNNNNNNNN ............................ CCTGATACAATCATCCTATTTGTCCTATCCAGAA 1291542 28 100.0 32 NNNNNNNNNN ............................ GACAAGAACCGAATCTTTCGCCGTGCCGTAAA 1291602 28 100.0 33 NNNNNNNNNN ............................ CCGAAATCATCAGATGTAATTAAGATTTTTGCT 1291663 28 100.0 32 NNNNNNNNNN ............................ AGACTGATGCAAGATGGCGGTATGCGTACAGA 1291723 28 100.0 1 NNNNNNNNNN ........................T.G. NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 5 28 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [68.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [356,5] Score: 0.18/0.18 # # Final direction: F [2.1,0 Confidence: HIGH] >NC_003923 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 290103 23 100.0 32 NNNNNNNNNN GTT.TA........C...A.CAT AGAAGCTGGCGGAAAGTCAGCATACAATAATG 290158 23 100.0 32 NNNNNNNNNN ....................... CAGAGAATTTCGAAAAGAAATTCTACAGGCAA 290213 23 100.0 33 NNNNNNNNNN ....................... TAGAAGCTGGCGGAAAGTCAGCTTACAATAATG 290269 23 100.0 1 NNNNNNNNNN ....................... NNNNNNNNNN ========== ====== ====== ====== ========== ======================= 4 23 32 TGCAAGTTGGCGGGGCCCCAACA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.30,-2.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [67,295] Score: 0.18/0.18 # # Final direction: R [0.64,0.96 Confidence: LOW] >NC_004116 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 908164 36 100.0 30 NNNNNNNNNN .................................... TAATTGCCAATGCTTACAATATCTTCGTCA 908230 36 100.0 30 NNNNNNNNNN .................................... ATGTTCTGAATTACCTTTCTCGACACTCCG 908296 36 100.0 30 NNNNNNNNNN .................................... ACCATCAAGGCTCTTATCTGCAGATTGTTA 908362 36 100.0 30 NNNNNNNNNN .................................... AAATGGTTGCCAATGACTTTCTAGAGTGAT 908428 36 100.0 30 NNNNNNNNNN .................................... ACAAAATCTTTTGTTGCTCCTGGACGTATT 908494 36 100.0 30 NNNNNNNNNN .................................... ATGTAAGGTATTGTAAAACTTCTTCTTGCG 908560 36 100.0 30 NNNNNNNNNN .................................... ACTGTTCCTATAATTAAAATAAAAGAGGTA 908626 36 100.0 30 NNNNNNNNNN .................................... TGTTCCAGTAAAAAGTAATTTTAAAGCATT 908692 36 100.0 30 NNNNNNNNNN .................................... CGCTCGATTGATGCTATCAACTATATTGAA 908758 36 100.0 30 NNNNNNNNNN .................................... TTCTTCAAGAGAACTTGTAGAACAGCTTCA 908824 36 100.0 30 NNNNNNNNNN .................................... AAGGTACTTTTAGCTTGTTCTTGTGGTGTT 908890 36 100.0 30 NNNNNNNNNN .................................... ACAGCTACTGTAAATTCTGCTTTTACGGTT 908956 36 100.0 30 NNNNNNNNNN .................................... TAGTGCAGTTGTCAAGGAGATTGTGAGCGA 909022 36 100.0 30 NNNNNNNNNN .................................... TTTAACCTTTGAAAATGTGAAAGGCTCGTA 909088 36 100.0 30 NNNNNNNNNN .................................... GCGATGATGGTAAGTCATCATGGACAGCGT 909154 36 100.0 30 NNNNNNNNNN .................................... TTTTACACACGATGTCAGATATAATGTCAA 909220 36 100.0 30 NNNNNNNNNN .................................... AGTACTGCACTAGGAATTGTAGAGATCAAA 909286 36 100.0 30 NNNNNNNNNN .................................... CGTACCATCTATCAATTTACCGCAAGCTGT 909352 36 100.0 30 NNNNNNNNNN .................................... TTAAAAGATTTAAACTATCAAGCGTCAATT 909418 36 100.0 30 NNNNNNNNNN .................................... TTCTAAATGCTGGTGACTGCTTTGCATAAA 909484 36 100.0 31 NNNNNNNNNN .................................... TTGCTGCTAGACCCAAACAGTTTATTTTTAG 909551 36 100.0 30 NNNNNNNNNN .................................... TCCTTTTTTAGATAATGTGCGATCACGGAC 909617 36 100.0 29 NNNNNNNNNN .................................... TTTTACCAATGCTTCCATATCGCTTATAT 909682 36 100.0 30 NNNNNNNNNN .................................... TGGTTATACATTTACTAATCCATCAGCATT 909748 36 100.0 30 NNNNNNNNNN .................................... AAGCTAATTCTCATCTCACCGAGATGGATA 909814 36 100.0 1 NNNNNNNNNN ...................ATT.TGCTAGGAC.TCA NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 26 36 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.20,-0.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [102,256] Score: 0.18/0.18 # # Final direction: F [0.78,0.45 Confidence: LOW] >NC_004088 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 1902329 31 100.0 29 TTATCTTACT ............................... TGCGCCAAAGAAAATGCCATTCAGATAAT 1902389 31 93.5 29 TTCAGATAAT .........T...................A. TACTAGAAGCTTGCCCATCTTACCTTTTC 1902449 31 100.0 TTACCTTTTC ............................... ATGAAAGACATTGTTCGCCAGTCCCCTGA ========== ====== ====== ====== ========== =============================== 3 31 29 GTTCACTGCCGCACAGGCAGCTTAGAAAATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [9,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [336,388] Score: 0/0.18 # # Final direction: F [1.42,0 Confidence: HIGH] >NC_004193 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================= ====== 3168886 33 100.0 19 NNNNNNNNNN ...T..A.T..A..AC................. TTCCGATCTCTCCTATTTA 3168938 33 100.0 19 NNNNNNNNNN .....T..T..................C..... CCACGATTTCTCACGTTTA 3168990 33 100.0 19 NNNNNNNNNN ................................. CCATGATTTCTCACCTTTA 3169042 33 100.0 19 NNNNNNNNNN ................................. TTTCGGTTTCTCCTGTTTA 3169094 33 100.0 19 NNNNNNNNNN ..G.............................. CCATGATTTCTCACCTTTA 3169146 33 100.0 1 NNNNNNNNNN ...............ATG......A..C....C NNNNNNNNNN ========== ====== ====== ====== ========== ================================= 6 33 19 TTTGGGTTAGAGAGCTGCTCTATTGACTACTTT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.61%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.30,-3.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [9-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [174,133] Score: 0/0.18 # # Final direction: R [0.37,0.41 Confidence: LOW] >NC_004547 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 4124152 28 100.0 33 NNNNNNNNNN .GAA..G..................... GGGTTGCCTCGGCCTGAACAGCGATCTCGCGTG 4124213 28 100.0 32 NNNNNNNNNN ..........A................. TTGAAATTAGTGACGTGAGCAGAATCGTAAAC 4124273 28 100.0 32 NNNNNNNNNN ............................ CGATACTCGGATACGCTCCCAGACCTTATCGA 4124333 28 100.0 32 NNNNNNNNNN ................G........... AACACGCCGCGCGATTTTGTCCACAATGCGCA 4124393 28 100.0 32 NNNNNNNNNN ................G........... TGTCGAGCGCTGATTCGTCGGTCACTGGATAC 4124453 28 100.0 32 NNNNNNNNNN ................G........... TCCATAGTCCTCGGAAGGGACGACGATGTGAC 4124513 28 100.0 32 NNNNNNNNNN ............................ CATTAATTGACGTCTCTCTATCAATTATCTGT 4124573 28 100.0 32 NNNNNNNNNN ............................ CCGAGCCTGTATTACAGGTGGTTATGGCGACA 4124633 28 100.0 32 NNNNNNNNNN ............................ ACGCTTGATATTGCTTATGGCGTGTTAGTTCA 4124693 28 100.0 32 NNNNNNNNNN ............................ GATCGGCAAAGATAATCAGGCACTCATCACCG 4124753 28 100.0 32 NNNNNNNNNN ............................ TGAATGAGCCGGCCAATCTATATCACTACACT 4124813 28 100.0 32 NNNNNNNNNN ..................T......... GGCGCGTCAGTGAAGTGGATGTATCCGTGCCA 4124873 28 100.0 32 NNNNNNNNNN ................GT.......... GCGGGGGCTAATGTGTCTGAGGCTGGTAGATC 4124933 28 100.0 32 NNNNNNNNNN ................G........... CCAGACCGCAGCAACTACCAGTTAGCTCAACA 4124993 28 100.0 32 NNNNNNNNNN ............................ GAGCAATTCGCGCATGAGTTCGCGTCTACGCT 4125053 28 100.0 32 NNNNNNNNNN ............................ GCGTTAGGCTCGTCGGTGTAGATCAACTTTCC 4125113 28 100.0 32 NNNNNNNNNN ............................ TCTTTGTAATCACCTGTACGGCTGGCCCACAC 4125173 28 100.0 32 NNNNNNNNNN ............................ TTACGGACGCAATCTATGTGCCGTGTAACGAT 4125233 28 100.0 32 NNNNNNNNNN ............................ ACGCTGCGTAAGCTGGCAACCGGTGAGGTGCA 4125293 28 100.0 32 NNNNNNNNNN ............................ TTTGTCCTTGAGCCTGACCGCTTCCGCCATCG 4125353 28 100.0 32 NNNNNNNNNN ............................ CTGTCGCAGTATTTGACCCACGACGTGATGCT 4125413 28 100.0 32 NNNNNNNNNN ............................ AGCTTGCGTTGCTCGTCTGTCAAATTGCGGGT 4125473 28 100.0 32 NNNNNNNNNN ............................ AGGCGATGGTGTCGTGGTCTGACCCTGCAAAC 4125533 28 100.0 32 NNNNNNNNNN ............................ AACCGTCGCTCGCTGGCCACTGTACGATTCGC 4125593 28 100.0 32 NNNNNNNNNN ............................ ACTCTGTTATTCCCCAACTGGCGTATGCCGAG 4125653 28 100.0 32 NNNNNNNNNN ............................ CCTGACGGCAACGCCGACGCCGATCCGACACA 4125713 28 100.0 32 NNNNNNNNNN ............................ AATCAATGGCTCAGGGGATTCTACAACCCTAA 4125773 28 100.0 32 NNNNNNNNNN ............................ GCATCCGTCCAGACCGTATCGATAGTCTCTGC 4125833 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 29 28 32 TTTCTAAGCTGCCTGTACGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,8] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [256,297] Score: 0/0.18 # # Final direction: R [0,1.92 Confidence: HIGH] >NC_004547 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 4135961 28 100.0 32 AATAGGAACG ............................ AGCCTGAACCCGTCCGATTATCAAGATGGGAA 4136021 28 100.0 32 AAGATGGGAA ............................ AGCTCCGACCGACATGCGCTTAAAGGCGGCGA 4136081 28 100.0 33 AAGGCGGCGA ............................ ATGCAGATATTGTAACTAAGCATCATATTGCAT 4136142 28 100.0 32 CATATTGCAT ............................ TGTAGGCCATATAACAAATACTCAAAGATAAC 4136202 28 92.9 32 CAAAGATAAC .............T......T....... TTGCGATTGGCACCGTTAACCGCTCAGTGACC 4136262 28 92.9 32 CTCAGTGACC A............T.............. TCCAGTACTCAGGATCGTGTTGGTACGATAAA 4136322 28 96.4 32 GTACGATAAA .............T.............. AGTTCTGACACTCGTTAAACGTCATAACGCGC 4136382 28 100.0 32 CATAACGCGC ............................ GAAATATCCACCTGGACACTGTCCATAAAGAA 4136442 28 96.4 32 CCATAAAGAA .............T.............. ACGACGGATAGTCTCTGTCTGACGAACGCAAC 4136502 28 96.4 CGAACGCAAC .............T.............. GCCCTGAAAAAAATGGGTTGTGATGACCATGC ========== ====== ====== ====== ========== ============================ 10 28 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [290,102] Score: 0.18/0.18 # # Final direction: F [2.1,0 Confidence: HIGH] >NC_004342 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3163660 36 100.0 35 NNNNNNNNNN ACTT.C.A..A.CG.G.....G.............. TTGATTGGTGCAGTTGTGCTTGTTTTGATTGGTGT 3163731 36 100.0 35 NNNNNNNNNN .................................... CCGTTCTGATTTTTTCTTTTCCTTCCTTTTGTTAT 3163802 36 100.0 36 NNNNNNNNNN .................................... CAGTAGATTTTGGATACACAAACCCGTTTGTGTTTC 3163874 36 100.0 35 NNNNNNNNNN .................................... GAATACAACCTCTTCAAAAAAGAGGAACCGGCGTA 3163945 36 100.0 1 NNNNNNNNNN ............................A.TTAG.T NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 5 36 35 CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.60,-3.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [11-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [773,518] Score: 0/0.18 # # Final direction: R [0.37,0.41 Confidence: LOW] >NC_004342 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3163253 37 100.0 34 NNNNNNNNNN ..................................... CCGTTCTGATTTTTTCTTTTCCTTCCTTTTGTTA 3163324 37 100.0 34 NNNNNNNNNN ..................................... ACCCCACGATACTACCTGTCAGACCGTGCCCGGA 3163395 37 100.0 34 NNNNNNNNNN ..................................... GCACTCCTCGAACTGGTAAAACTACCGATGCTCG 3163466 37 100.0 1 NNNNNNNNNN C............................G.TTAG.A NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 4 37 34 TCTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.60,-3.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [366,996] Score: 0.18/0.18 # # Final direction: F [1.05,0.18 Confidence: HIGH] >NC_004342 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3164839 36 100.0 34 NNNNNNNNNN ..T.CA.A..TCGG.......G.............. GAATAACTCGTTCGGAAAGCGTTCTGCGGATCTT 3164909 36 100.0 37 NNNNNNNNNN .................................... TCGTAAAGATCGTCTGCGTGTTCGTCGTGATACGTGT 3164982 36 100.0 36 NNNNNNNNNN .....................G.............. AGCATAGCGGACGTGTTCTTTGTTCGTTTTATCGAA 3165054 36 100.0 36 NNNNNNNNNN .................................... AGCGTGCAACAAAACACGGAATACAATTCTCTTTGC 3165126 36 100.0 1 NNNNNNNNNN ............................A.TTAG.. NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 5 36 35 CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.60,-3.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [9-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1952,329] Score: 0.18/0.18 # # Final direction: F [0.55,0.41 Confidence: LOW] >NC_004350 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1327814 36 100.0 30 NNNNNNNNNN A....A.T.AATCAGT..CT....TG.......... TCAAATGTAGTAGTTACTTTCTTTTCACAT 1327880 36 100.0 30 NNNNNNNNNN .................................... TGTGGCAAGTCATGTCCGAATACATAGGCA 1327946 36 100.0 30 NNNNNNNNNN .................................... GTTTGTCTATTGTCTAATTGAAAATATTTA 1328012 36 100.0 30 NNNNNNNNNN .................................... CTAACTATGATGACACAACAGCTTTTAGCG 1328078 36 100.0 30 NNNNNNNNNN .................................... AGAGCACTAACTGCGCTAGCTGGTTCAATC 1328144 36 100.0 30 NNNNNNNNNN .................................... TCACCATATTAATTAATGGCGTTTCCTTTT 1328210 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 7 36 30 GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-5.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [84,156] Score: 0/0.18 # # Final direction: R [0.27,0.78 Confidence: MEDIUM] >NC_004631 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2912041 29 100.0 32 NNNNNNNNNN GT........................... GGACAGCAACCCGTGTCGGATATCAGACAGAT 2912102 29 100.0 32 NNNNNNNNNN ............................. ACGCGAATCGCCAATCGCCGCCGCGTGAATTG 2912163 29 100.0 32 NNNNNNNNNN ............................. CCACGATGTATGCCGACCGTGATTTTTACCGC 2912224 29 100.0 32 NNNNNNNNNN ............................. AGATACGCCTTTACGTCGCCCTCTTTGGCGCG 2912285 29 100.0 32 NNNNNNNNNN ............................. ATTAAAAAAGATTAATGTTGGTTATAGTTTTA 2912346 29 100.0 32 NNNNNNNNNN .................T........... TAAAACACCGGTTGCGCAACCTCCGCGGGGAT 2912407 29 100.0 1 NNNNNNNNNN .........................T.GG NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 7 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [48.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [16,112] Score: 0.18/0.18 # # Final direction: R [0.41,1.69 Confidence: MEDIUM] >NC_004368 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================== ====== 1588776 26 100.0 46 NNNNNNNNNN ......A....G.............. CGTGGCACTCATTGAAGCGCTAGTGCTGGCTGACATTGACGCACTC 1588848 26 100.0 46 NNNNNNNNNN .....A.....G.............. CGACGCACTCATTGAAGCGCTAGTGCTGGCTGACATCGAGGCACTT 1588920 26 100.0 46 NNNNNNNNNN .....A.AA..T............A. TGACGCACTCGTTGAGGCGCTAGTGCTAGCTGACGTCGAGGCACTC 1588992 26 100.0 46 NNNNNNNNNN A....A..................A. CGAGGCACTTGTTGAAGAACTTGTGCTGGCTGACATTGACGCACTC 1589064 26 100.0 46 NNNNNNNNNN .......................... CGACGCACTCATGGAAGCACTTGTGCTGGCTGACGTCGAGGCACTC 1589136 26 100.0 46 NNNNNNNNNN A......................T.. CGATGCACTGGTACTTGCACTTGTGGAAGAACTTGTACTTGCCGAT 1589208 26 100.0 22 NNNNNNNNNN ..............A..T.....T.. GGAAGCACTCGTACTTGCACTT 1589256 26 100.0 34 NNNNNNNNNN ..G..A.....G..A..T.....T.. CGATGCACTCATTGAGGCGCTAGTACTTGCACTT 1589316 26 100.0 58 NNNNNNNNNN ..G..A..A..G.............. CGATGCACTCATTGAGGCGCTAGTACTGGCTGACGTCGATGCACTGGTACTTGCACTT 1589400 26 100.0 46 NNNNNNNNNN ..G..A.....CA.A..T........ GGATGCACTGATACTTGCACTTGTGGAGGCGCTCATACTTGCTGAC 1589472 26 100.0 22 NNNNNNNNNN ..G..T..A..G..A..T........ GGATGCGCTCATACTTGCTGAT 1589520 26 100.0 22 NNNNNNNNNN ..G..T..A..G..A..T........ GGAAGCGCTAGTACTTGTTGAC 1589568 26 100.0 22 NNNNNNNNNN ..C.....A..G..A.....ACTG.. TGAAGCACTAGTACTTGCACTG 1589616 26 100.0 22 NNNNNNNNNN ...........CA.A..T..ACTT.. GGAAGCGCTAGTACTTGCACTT 1589664 26 100.0 22 NNNNNNNNNN ...........CA.A..T.....G.. GGAAGCACTGGTACTGGCACTG 1589712 26 100.0 34 NNNNNNNNNN ..............A.........A. TGAGGCGCTAGTACTTGCTGACGTGGATGCACTC 1589772 26 100.0 46 NNNNNNNNNN A......................T.. GGAAGCACTGGTTGAAGCACTGGTTGAAGCACTGGTTGAAGCACTG 1589844 26 100.0 22 NNNNNNNNNN .......G...G.............. GGATGCGCTCATACTTGCTGAT 1589892 26 100.0 22 NNNNNNNNNN ..G..T..A..G..A..T........ GGAAGCGCTAGTACTTGTTGAC 1589940 26 100.0 22 NNNNNNNNNN ..C.....A..G..A.....ACTT.. TGAAGCACTAGTACTTGCACTG 1589988 26 100.0 22 NNNNNNNNNN ...........CA.A..T..ACTT.. TGAAGCGCTAGTACTTGCACTT 1590036 26 100.0 34 NNNNNNNNNN ...........CA.A..T.....G.. GGAAGCACTGGTTGAAGCACTGGTTGAAGCACTG 1590096 26 100.0 46 NNNNNNNNNN .......................... CGAGGCACTCATTGAAGCACTTGTGCTGGCTGACATCGACGCACTC 1590168 26 100.0 46 NNNNNNNNNN A......................T.. GGAAGCACTGGTTGAAGCACTGGTTGAGGCGCTGGTGCTGGCTGAC 1590240 26 100.0 34 NNNNNNNNNN .......................... TGAGGCACTCGTTGAGGCGCTGGTGCTGGCACTT 1590300 26 100.0 46 NNNNNNNNNN ..G..A........A..T........ GGATGCACTCGTACTTGCACTTGTTGAAGCACTCATACTTGCACTT 1590372 26 100.0 22 NNNNNNNNNN .....A..A..T...........T.. CGAGGCACTCGTTGAGGTGCTG 1590420 26 100.0 46 NNNNNNNNNN .....A.....G.............. CGACGCACTCATGGAAGCGCTGGTACTTGCTGATGTCGAGGCACTC 1590492 26 100.0 1 NNNNNNNNNN A.G..A.....G..A..T.....T.. NNNNNNNNNN ========== ====== ====== ====== ========== ========================== 29 26 35 GTTGAGGCGCTAGTGCTGGCTGACGT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.40,-1.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [33-46] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [50.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [537,2370] Score: 0.18/0.18 # # Final direction: F [1.05,0.55 Confidence: LOW] >NC_004368 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 951908 36 100.0 30 TTTCTACGAG .................................... AAAAACTCTTACCACTTACATACATGTATG 951974 36 100.0 30 TACATGTATG .................................... GCTGGAGATTTTACAAGCAGTTTGAATTTC 952040 36 100.0 30 TTTGAATTTC .................................... ATCACACCAGTCGTTATGATGGATGACTAT 952106 36 100.0 30 GGATGACTAT .................................... TGTCAACAGTACGTGAGACGAGTGTGTAGG 952172 36 97.2 30 AGTGTGTAGG ..............T..................... TGAAGTTGATGGATATGTTGATTTAGAGCT 952238 36 97.2 30 ATTTAGAGCT ..............T..................... TAATCATTTTATGAGAGATACCGCCTCAAG 952304 36 97.2 30 CCGCCTCAAG ..............T..................... TTTAAAGAGATATCTGTTTCATCTTGCGGA 952370 36 97.2 30 ATCTTGCGGA ..............T..................... TTTAAAGAGATATCTGTTTCATCTTGCGGA 952436 36 97.2 30 ATCTTGCGGA ..............T..................... AATCACTTCTGCATAAATATCTTTTACTTC 952502 36 97.2 30 CTTTTACTTC ..............T..................... AAACATCCGCAACGGGATAAATAAAGCTAG 952568 36 97.2 30 ATAAAGCTAG ..............T..................... AGTTTCTTGTGGGTTAGCTTGTCCACCGTA 952634 36 100.0 30 GTCCACCGTA .................................... GAACATGAAAGATTTTAAAAAAGAACATTT 952700 36 100.0 30 AAGAACATTT .................................... AGAGGGGAAAATATCAATGCCGAATGCTGA 952766 36 100.0 CGAATGCTGA .................................... GATGGTACAAAATCATTTGTTGGTACTGAT ========== ====== ====== ====== ========== ==================================== 14 36 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.20,-0.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [56.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [102,54] Score: 0/0.18 # # Final direction: F [0.37,0.27 Confidence: LOW] >NC_004369 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1241444 36 100.0 36 NNNNNNNNNN .................................... TGGTTGGTCTTGGTGGGGCACGGGAACTTATCGAAG 1241516 36 100.0 33 NNNNNNNNNN .................................... CCAGGATCGGATGATGCTGGTGAGCCAGAGGAT 1241585 36 100.0 37 NNNNNNNNNN .................................... TTTTGCGGACGATGTAGTCCCCAACCTTGATGCCGGG 1241658 36 100.0 35 NNNNNNNNNN .................................... ACATAGGCATCTTCAGCTTCGCCAAGTCCATTGAG 1241729 36 100.0 38 NNNNNNNNNN .................................... ATCAGCTGATCGGTGCCCGTCAGCACGCACCGCGAACC 1241803 36 100.0 35 NNNNNNNNNN .................................... AGACCTTCATACAGGTTTACAGCACCAGTAAAGCT 1241874 36 100.0 35 NNNNNNNNNN .................................... GACGCCCCGGACTCAAGCGCGAAGATCTTCTCGAT 1241945 36 100.0 35 NNNNNNNNNN .................................... GCAGGATGGAACGACACCCCCATTGCTGATGGAGG 1242016 36 100.0 35 NNNNNNNNNN .................................... TATGATCGAGTGACGCGGACCCGGGGTGAGGATAA 1242087 36 100.0 34 NNNNNNNNNN .................................... CCGCGATTGCCCTGCCGAGTCGTGCGCCCACCCC 1242157 36 100.0 34 NNNNNNNNNN .................................... TGAGGACCTCACCATCTACGACACGTCCGATCAG 1242227 36 100.0 35 NNNNNNNNNN .................................... TAAGGCACCAGATCACAATGGTGCACCCCGTGTGT 1242298 36 100.0 35 NNNNNNNNNN .................................... CAGGGCGCCCGGGTCCCAGCCGGGGTAGCTGGCCT 1242369 36 100.0 36 NNNNNNNNNN .................................... GTCGGGCGTCGACGCCACGTCTGGCGAAGTCGAACG 1242441 36 100.0 35 NNNNNNNNNN .................................... GTTGTTCATGATGCGTCTTTCCTGGGGGGCTAGGG 1242512 36 100.0 34 NNNNNNNNNN .................................... GGCTGCAGCGGGCGCTGTGGAGCTCGCTGGAAGA 1242582 36 100.0 36 NNNNNNNNNN .................................... GGAGGGGTGCCACTGGTAGAGCCAGCCGTAGTCGTC 1242654 36 100.0 39 NNNNNNNNNN .................................... TGGTGCGCCCTCGATGAGGCGGTTGACCTTCTCCACCAG 1242729 36 100.0 34 NNNNNNNNNN .................................... GAATCGTAGAGGATGCCATCCTCCACAAAGCAAA 1242799 36 100.0 37 NNNNNNNNNN .................................... TTCCTCATCGACGCCACGATCGATTCCATAGTGGTCC 1242872 36 100.0 39 NNNNNNNNNN .................................... GTCCACAGAATCCCCCCAGAAACTGGGGCCGATCTCGTC 1242947 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 22 36 35 CCCTCAATGAAAGGCCGTCGAACTAACGACGGCAGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [11,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.90,-6.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [45.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [152,308] Score: 0.18/0.18 # # Final direction: R [0.37,0.82 Confidence: MEDIUM] >NC_004557 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1573299 30 100.0 34 TTACAGCAAT .............................. GTGTGTTCCGTATCAATCTAGGTCGGCAAACTTC 1573363 30 100.0 35 GGCAAACTTC .............................. AGATGTTTTAACAACGATAATGAATGCTTACAAAA 1573428 30 100.0 37 GCTTACAAAA .............................. TATTAATTCTCCTTTTGAGCTATGCTCATATATATTT 1573495 30 100.0 35 ATATATATTT .............................. GAGCTACAAGATAAATACAAAGATGTGGATTTAGT 1573560 30 100.0 36 TGGATTTAGT .............................. ATATGCAATAGCCATATTTCAAAGATATTCAAAGGA 1573626 30 100.0 ATTCAAAGGA .............................. CACTGTAAAA ========== ====== ====== ====== ========== ============================== 6 30 35 ATTTAAATACAACTCTTGTTATTGTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [500,214] Score: 0.18/0.18 # # Final direction: R [0.18,0.37 Confidence: MEDIUM] >NC_004557 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1571158 30 100.0 36 GCAGCATAAC .............................. AGGTTGGGACTGTTGGGGAAATGAAGTAAATCTTAA 1571224 30 100.0 34 TAAATCTTAA .............................. ACCCTAATTGTAGAACTACAATAGTTCCGTATTT 1571288 30 100.0 36 TTCCGTATTT .............................. ACAGTAACATGAATACACTCATGTTACTGTTTTTCA 1571354 30 100.0 CTGTTTTTCA .............................. CACTGTAAAA ========== ====== ====== ====== ========== ============================== 4 30 35 ATTTAAATACAACTCTTGTTATTGTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [65.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [637,206] Score: 0.18/0.18 # # Final direction: R [0.18,0.64 Confidence: MEDIUM] >NC_004557 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1217308 30 100.0 36 AGATGAACGC .............................. TTAAATGAAGGTACTAAATTTAAGGTAAGAATGGTG 1217374 30 100.0 36 AAGAATGGTG .............................. AGCATTCCTCTATCTCCATTAACTACTGAAAAAGGA 1217440 30 100.0 36 TGAAAAAGGA .............................. GCTATAAGAATAATTCTAATTTTATCCAAGGAACTG 1217506 30 100.0 38 CAAGGAACTG .............................. TTCCAATTTTACTAGCTGCTACCCCAACGCCTAATAAT 1217574 30 100.0 37 GCCTAATAAT .............................. TAAATATATTACTTCCTTCTTGCACTGTAGGTTTTTC 1217641 30 100.0 35 TAGGTTTTTC .............................. TTGTTCGTAACTGTTAAAGCTATCTTTCTTTATGC 1217706 30 100.0 37 TTCTTTATGC .............................. AGAGCCTAGTTTCCTAAGCCCTTATAACCAACTTACC 1217773 30 100.0 39 CCAACTTACC .............................. ATACAATGCTCCATGGAAAGGACTCCACTTAGATATATA 1217842 30 100.0 36 TAGATATATA .............................. CCCACATCATTAAAGGATATAAAATTACCACCTTCC 1217908 30 100.0 37 ACCACCTTCC .............................. GTTTTAATATTAATATCGGCAAGTGCTAATTCATATG 1217975 30 100.0 37 AATTCATATG .............................. GTTTTAATATTAATATCGGCAAGTGCTAATTCATATG 1218042 30 100.0 36 AATTCATATG .............................. AACTGCACAGTATCACCGCTAGCTTTTAATTCTTTA 1218108 30 100.0 36 TAATTCTTTA .............................. TTTTGAAGTATATTATAAAGGCACAGTAACACGCCC 1218174 30 100.0 35 TAACACGCCC .............................. GCTTTAACTCTTAAAAAAGATAAAGTTCTAAATTC 1218239 30 100.0 36 TTCTAAATTC .............................. AAGATGCAGCCAACGCACTTGGATATATGGCTTTGG 1218305 30 100.0 36 ATGGCTTTGG .............................. GGTAATGTAAGTAATTCTACAACCAATAATAGCAAT 1218371 30 100.0 36 TAATAGCAAT .............................. ATACAGAATACAAGATTATAGTTAGTGGATATAGAA 1218437 30 100.0 35 GGATATAGAA .............................. AATGAAGTCAAATAATAACATACCATTTTGTGCTC 1218502 30 100.0 36 TTTTGTGCTC .............................. TTTAAATCTGGTTTATTTTTTACATTCTTCCAATCC 1218568 30 100.0 37 CTTCCAATCC .............................. AAGTGCGTTATTTACGCCTTCTATATGTCCGAATACC 1218635 30 100.0 36 TCCGAATACC .............................. TTTTCATTAGCAATTCCTTTGTACTGCCATCTTCCG 1218701 30 100.0 38 CCATCTTCCG .............................. CCTAGTACGCCCAGCATACCCAAAAAAGAACTACTTAA 1218769 30 100.0 38 AACTACTTAA .............................. CTGGAAAGAGGCAATAAAGCATTAGGAATAATAAAATG 1218837 30 100.0 38 TAATAAAATG .............................. CTTACTAACACTTTCAGACCTAGTATTAAAATAATTTT 1218905 30 100.0 37 AAATAATTTT .............................. GTGTTACATCTCCCAATTTCTCCTCATAATACTTTAA 1218972 30 100.0 36 AATACTTTAA .............................. GCTATAGCTAGTATAGTAGATACGTTGCGAGAATGG 1219038 30 100.0 37 GCGAGAATGG .............................. AATTAATATTGGCAGTATATGCTATACCATCTATAGC 1219105 30 100.0 38 CATCTATAGC .............................. TATCTAACTCAATATTTTCTTCTTTTACATCCTGTTTA 1219173 30 100.0 36 ATCCTGTTTA .............................. AAATTAATAAAGATAGTAGGTTAAAGGGTATATTAG 1219239 30 100.0 36 GGTATATTAG .............................. TTATAAAATTCTATTTCTAGTTCTTCTTGAGTATAT 1219305 30 100.0 35 TTGAGTATAT .............................. GTCGACCCATTGGAGTTAGACAGATGGGATTTTCA 1219370 30 100.0 36 GGGATTTTCA .............................. TTAGCATCTATAATATTTACTTCTTTAATAGTTCTT 1219436 30 100.0 35 AATAGTTCTT .............................. ATATGTGATGATGAATTAGAGAAAGTGCTTGAAAG 1219501 30 96.7 TGCTTGAAAG ........................A..... TGACTGTAAC ========== ====== ====== ====== ========== ============================== 34 30 36 GTATTAGTAGCACCATATTGGAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.00,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [470,85] Score: 0.18/0.18 # # Final direction: F [0.96,0 Confidence: HIGH] >NC_004671 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 528 20 100.0 34 NNNNNNNNNN .................... CTTCGGATAAACATGATAAAATCGGCGTTTCTTT 582 20 100.0 34 NNNNNNNNNN .................... GTCCAGAAGAATCCAATAATACCAGTACTTTGTT 636 20 100.0 1 NNNNNNNNNN .................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================== 3 20 34 CGAAAGTGGGAAAAACCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [529,626] Score: 0/0.18 # # Final direction: R [0,0.27 Confidence: MEDIUM] >NC_004557 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1592010 30 96.7 35 TAATGTATAT -............................. GTGCTGCACTTCTAGAACTTAAATTACATTCCTTT 1592075 30 100.0 34 ACATTCCTTT .............................. ATATAGAGAAATCACTTAAAATAATAGAATTTGC 1592139 30 100.0 34 TAGAATTTGC .............................. AAAATAAAAGGAAGTGGTAATATAGTGAAAACAT 1592203 30 100.0 34 GTGAAAACAT .............................. ATCGACTAAAGATTATATTTGGGGGTAAGATAAA 1592267 30 100.0 36 GTAAGATAAA .............................. GAATGCTACACAATTTGCTAACAATGCTATGAATGA 1592333 30 100.0 36 CTATGAATGA .............................. GCATCAAACATAGTTACAGCAATTGTAGTTACAAAG 1592399 30 100.0 AGTTACAAAG .............................. CACTGTAAAAT ========== ====== ====== ====== ========== ============================== 7 30 34 ATTTAAATACAACTCTTGTTATTGTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [105,1017] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_004722 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================== ====== 4625238 21 100.0 78 NNNNNNNNNN T.....G....AT......GC TGAATTTCCTCAAGTGCTACAAATGTCTCTACTACAGGCGCTTTTGTTTCTGCAATCACTTCTGTTTCTTCTGCTTCC 4625337 21 100.0 69 NNNNNNNNNN ..................... GCTTCCGCAATTACTTCCACTTCTTCCGTTTCCGCAATTACTTCCACTTCTTCTGACTCTTCTGTTTCT 4625427 21 100.0 51 NNNNNNNNNN .T................... AGCTCTTTCGCTTCCGCAATTACTTCCACTTCTTCTGACTCTTCTGTTTCT 4625499 21 100.0 51 NNNNNNNNNN ..................... GACTCTTTCGCTTCCGCAATTACTTCCACTTCTTCTGACTCTTTCGCTTCC 4625571 21 100.0 51 NNNNNNNNNN ..................... GACTCTTTCGCTTCCGCAATTACTTCCACTTCTTCTGACTCTTTCGCTTCC 4625643 21 100.0 51 NNNNNNNNNN ..................... GACTCTTTCGCTTCCGCAATTACTTCCACTTCTTCTGACTCTTTCGCTTCC 4625715 21 100.0 42 NNNNNNNNNN ..................... GACTCTTCTGTTTCTACAATCACTTCTACTTCTTCTGCTTCC 4625778 21 100.0 36 NNNNNNNNNN ..................... GTTTCCATAACTACTTCTTCTGGCTCTTTCGTTTCT 4625835 21 100.0 57 NNNNNNNNNN ..................... TCCACTTCTTCAGGTGCCTCTGTTTCCATAACTACTTCTTCAAGCTCTTCCGTTTCT 4625913 21 100.0 1 NNNNNNNNNN ...........T....T.GAC NNNNNNNNNN ========== ====== ====== ====== ========== ===================== 10 21 54 GCAATTACTTCCACTTCTTCT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.90%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [7-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [2464,1227] Score: 0.18/0.18 # # Final direction: R [0.18,0.41 Confidence: MEDIUM] >NC_004722 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================================================== ====== 5209576 62 100.0 40 GCTTCGCCAA .............................................................. TTTTCTGTTTCGCTAATGCTGCCGCTTTTGCTTTTGCGGC 5209678 62 100.0 40 CTTTTGCGGC .............................................................. TTTTCTGTTTCGCTAACGCCGCCGCTTTTGCTTTTGCGGC 5209780 62 100.0 CTTTTGCGGC .............................................................. ========== ====== ====== ====== ========== ============================================================== 3 62 40 TGCTGCTGCCTTCGCCTTCGCTTTCGCTTTTTCTTCTTCCGTTACTTCTTCGGTTCCTTCTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,30] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.80,-6.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [640,338] Score: 0/0.18 # # Final direction: R [0,0.74 Confidence: HIGH] >NC_004757 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 139594 36 100.0 34 NNNNNNNNNN CA..A.TC.GGCGGT..T......T........... GGTATCCTGCTGTTGAAAAAGATAGGTGGGCGTT 139664 36 100.0 33 NNNNNNNNNN .................................... ATCTATTGGCCGTATGGTTTCGAAGTAAAGATG 139733 36 100.0 34 NNNNNNNNNN .................................... TCTACTGGTTCGAGACATATGAGGAAAAGTATTT 139803 36 100.0 35 NNNNNNNNNN .................................... AAACCAGAATCAAGAAAGAAGACAAAAATTACTAC 139874 36 100.0 35 NNNNNNNNNN .................................... AAACCAGAATCAAGAAAGAAGACAAAAATTACTAC 139945 36 100.0 34 NNNNNNNNNN .................................... CCTTGGCTAACGCGATCAGTTATGGTGATCCTAA 140015 36 100.0 35 NNNNNNNNNN .................................... GATTCCATGCCGAAATCTTTCCCAACGAGACCTAT 140086 36 100.0 35 NNNNNNNNNN .................................... TCGGCGTAGATTCGGAGAATACTGCTCGGGCAGTG 140157 36 100.0 35 NNNNNNNNNN .................................... AGAATATTAATGTCGGCAATGTTCAGGCAAACGGA 140228 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 10 36 34 GTCTCAATCCCTTTGAAATCAGGGCATCGGTGTTTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.70,-6.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [161,120] Score: 0/0.18 # # Final direction: R [0,0.78 Confidence: HIGH] >NC_004757 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 921023 37 100.0 35 TAGTTGTACT ..................................... TGGCAATCCTTGATCCATAACGAGATGACTAGCTT 921095 37 100.0 35 TGACTAGCTT ..................................... ATTGATGTTACAATCCGAGAAAACCGAGGCTCCTA 921167 37 100.0 36 GAGGCTCCTA ..................................... AGTGGCATCAGTAATAGATTTGTCAGGGTCACAGGC 921240 37 100.0 35 GGTCACAGGC ..................................... TCTACCTCTCTTGATCTCCATCAGGAAATTGCCAG 921312 37 100.0 34 AAATTGCCAG ..................................... TTTAAATCGCTAAGAATTACTGACCCTAATCTAA 921383 37 100.0 35 CCTAATCTAA ..................................... ACATCGTAATAGGCTGCATTACTGGCCCGTGTCAA 921455 37 100.0 36 CCCGTGTCAA ..................................... ATGATGTATTCAGGTATCAGCGTCTGTGCCGGTAAT 921528 37 100.0 35 TGCCGGTAAT ..................................... CCGGTAGTCGACCTATTAAAGCCATCATTTAATTA 921600 37 100.0 CATTTAATTA ..................................... AGTTATTCTC ========== ====== ====== ====== ========== ===================================== 9 37 35 GTAGCGCCCGGTCACCAGACCGGGCGAGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [9,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-17.30,-17.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [182,4] Score: 0.18/0.18 # # Final direction: F [5.32,0 Confidence: HIGH] >NC_004829 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 925156 36 100.0 30 NNNNNNNNNN .................................... ATTTTCTCTTGGAAAATTACCAATTATACC 925222 36 100.0 30 NNNNNNNNNN .................................... CAAGATTTTAAATTCTGTTATAATCACCAC 925288 36 100.0 30 NNNNNNNNNN .................................... TTTTGCAACAGCTGGAATCGTTAGTGTGAT 925354 36 100.0 30 NNNNNNNNNN .................................... TTTAAGTGCGCTAAAACAAACTTTTTGTTA 925420 36 100.0 30 NNNNNNNNNN .................................... TTTAAGTGCGCCAAAACAAACTGTTTGTTA 925486 36 100.0 30 NNNNNNNNNN .................................... ACGAATCAAATTATTATTTGAATACAATCG 925552 36 100.0 30 NNNNNNNNNN .................................... TCGCGCGAAGAATAGTATAACACTTGTTTA 925618 36 100.0 30 NNNNNNNNNN .................................... AATTTAAATATTTGTTTATAATTATTATGT 925684 36 100.0 30 NNNNNNNNNN .................................... TATAGAACCTGTTGCTCTATTTGCTTTTGA 925750 36 100.0 30 NNNNNNNNNN .................................... TATTTTTTAAATGTGTAACCTTCTTTTTCA 925816 36 100.0 30 NNNNNNNNNN .................................... TAAATAATTTACTCGCATTAACTTTAGCTA 925882 36 100.0 30 NNNNNNNNNN .................................... AGAATAAAGGGTTAGATAGTTCTTGTTTTT 925948 36 100.0 30 NNNNNNNNNN .................................... TCCCATACAAAACCCGTCTTTGGACGGGTT 926014 36 100.0 30 NNNNNNNNNN .................................... AAAGCAAATAGAGTAACAGGTTCTATAACC 926080 36 100.0 30 NNNNNNNNNN .................................... AAATTTAAAATTGCCTATTGAATTCGTGAA 926146 36 100.0 30 NNNNNNNNNN .................................... TTTTTGGTTTAAAAAAGAACCACAGGGTAA 926212 36 100.0 30 NNNNNNNNNN .................................... AGTTAACATCAATGTAATAAATTTGACCTA 926278 36 100.0 30 NNNNNNNNNN .................................... ATGTTAACTCGATGTATCCTTACGTAATGA 926344 36 100.0 30 NNNNNNNNNN .................................... CTTTTTGTGCCAATTTACCGTACAAAGAGT 926410 36 100.0 30 NNNNNNNNNN .................................... AAAAACGTCGTCAATTGCGCTAGATCAGCC 926476 36 100.0 31 NNNNNNNNNN .................................... CAAGTCGATATAATTAAGCTATTTGATCCTA 926543 36 100.0 30 NNNNNNNNNN .................................... CGCCTAATAACCCACTACTAAACGCCACCC 926609 36 100.0 30 NNNNNNNNNN .................................... ATTAAAATTTAAATTATAAAATTCGCCAGC 926675 36 100.0 30 NNNNNNNNNN .................................... CTACTTCATTAAATCTACCCTCTGGAATAA 926741 36 100.0 30 NNNNNNNNNN .................................... TTAAAAAACGCAATTGTATCGTTTTGACGA 926807 36 100.0 30 NNNNNNNNNN .................................... CACACGATTGTCTTAAAGTCAAATCCTTCA 926873 36 100.0 30 NNNNNNNNNN .................................... GTTGAGCTAATTGGACTTAAAGCAAATATT 926939 36 100.0 30 NNNNNNNNNN .................................... TTGTTGTCGTAAAAATAGTTGATTGTATCG 927005 36 100.0 30 NNNNNNNNNN .................................... AGACTGTTTGGTGTAACTATTTATGTCGTA 927071 36 100.0 30 NNNNNNNNNN .................................... CACACGATAGTGTTAAAAACAAACCCATCG 927137 36 100.0 30 NNNNNNNNNN .................................... TTGTTTGATTTATTGGGTCGGTATAAGTTG 927203 36 100.0 30 NNNNNNNNNN .................................... AAATCTGAATGTTTGGTAATCTTCATGGTG 927269 36 100.0 30 NNNNNNNNNN .................................... TCGAAGTAGGCAAAACTTAATATTACGACT 927335 36 100.0 30 NNNNNNNNNN .................................... AATGAAGTAGATATCGTTAACTTCTTTTGT 927401 36 100.0 30 NNNNNNNNNN .................................... GTTTTGTCAAAATTAAATGTTACGGACTTA 927467 36 100.0 30 NNNNNNNNNN .................................... TTTGTTGCTGGTTTTATAAACTAAACCACT 927533 36 100.0 30 NNNNNNNNNN .................................... AGTTGGTAAGTTAAACGTAGTTGTATTAGT 927599 36 100.0 30 NNNNNNNNNN .................................... AAAAAATAATTGAGTCAGTGTCGCAATATA 927665 36 100.0 30 NNNNNNNNNN .................................... ATAAAAATTTATAAGATCGCTTATGTAGTT 927731 36 100.0 30 NNNNNNNNNN .................................... CTCTAATCACTCACGTTTAAGTGTTTTGCG 927797 36 100.0 30 NNNNNNNNNN .................................... TACGTCGTTTAACTTTTTGGTTCTAAAGAG 927863 36 100.0 30 NNNNNNNNNN .................................... AATTTTTTCAAAAACTATTGACAAATTCAA 927929 36 100.0 30 NNNNNNNNNN .................................... AAGTGGTGTAGTTAGTTATAAAGGGTGGGT 927995 36 100.0 30 NNNNNNNNNN .................................... TAGAACAAATTAATCGAGATTTGCAACTTC 928061 36 100.0 30 NNNNNNNNNN .................................... TTGACAATCTTATGATCTCAACTCACCCGC 928127 36 100.0 30 NNNNNNNNNN .................................... CGTTCGGTTGAGCCGTAGTTTTCTGTCGTA 928193 36 100.0 30 NNNNNNNNNN .................................... ATATTTAAAGTTGTTAAATAGCTTAACGGT 928259 36 100.0 30 NNNNNNNNNN .................................... AAAAAGTTGATATTTTGGTTGCCCAAATAG 928325 36 100.0 30 NNNNNNNNNN .................................... AATCCAACAAACGATACGGATGGTGTTAAT 928391 36 100.0 30 NNNNNNNNNN .................................... TTTGTATAGCTATTTATGTCATAGATATAA 928457 36 100.0 30 NNNNNNNNNN .................................... TTAATCTTAAAATAATAACTGTCTACTTGT 928523 36 100.0 30 NNNNNNNNNN .................................... TAAATGTTGACAAAACACTTGGAATGTTGT 928589 36 100.0 30 NNNNNNNNNN .................................... TGTCCCAGTTTTTGGTGTTCTATTTAATGA 928655 36 100.0 30 NNNNNNNNNN .................................... TAAAGTCCATTAAGCTAACAATTTTACTCA 928721 36 100.0 30 NNNNNNNNNN .................................... TTGGGTCGGTATATGTTGCTAATTTATAAA 928787 36 100.0 30 NNNNNNNNNN .................................... GAATCAAGATAAAAACAAAGTCGTGATCTC 928853 36 100.0 30 NNNNNNNNNN .................................... ATCCATCACTAGAATTTGGTTAGCACGATC 928919 36 100.0 30 NNNNNNNNNN .................................... TTAATTTTCACAATTGCGGTTGATAGTGCT 928985 36 100.0 30 NNNNNNNNNN .................................... TTAAAAAACGCAATTGTATCGTTTTGACGA 929051 36 100.0 30 NNNNNNNNNN .................................... AAAAGCATATTGTAGAAGTTGTAAGTAACG 929117 36 100.0 30 NNNNNNNNNN .................................... GTTTTGTCAAAATTAAATGTTACGGACTTA 929183 36 100.0 30 NNNNNNNNNN .................................... TTTGTTGCTGGTTTTATAAACTAAACCACT 929249 36 100.0 30 NNNNNNNNNN .................................... AGTTGGTAAGTTAAACGTAGTTGTATTAGT 929315 36 100.0 30 NNNNNNNNNN .................................... AAAAAATAATTGAGTCAGTGTCGCAATATA 929381 36 100.0 30 NNNNNNNNNN .................................... ATAAAAATTTATAAGATCGCTTATGTAGTT 929447 36 100.0 30 NNNNNNNNNN .................................... CTCTAATCACTCACGTTTAAGTGTTTTGCG 929513 36 100.0 30 NNNNNNNNNN .................................... TACGTCGTTTAACTTTTTGGTTCTAAAGAG 929579 36 100.0 30 NNNNNNNNNN .................................... AATTTTTTCAAAAACTATTGACAAATTCAA 929645 36 100.0 30 NNNNNNNNNN .................................... AAGTGGTGTAGTTAGTTATAAAGGGTGGGT 929711 36 100.0 30 NNNNNNNNNN .................................... TAGAACAAATTAATCGAGATTTGCAACTTC 929777 36 100.0 30 NNNNNNNNNN .................................... TTGACAATCTTATGATCTCAACTCACCCGC 929843 36 100.0 30 NNNNNNNNNN .................................... CGTTCGGTTGAGCCGTAGTTTTCTGTCGTA 929909 36 100.0 30 NNNNNNNNNN .................................... ATATTTAAAGTTGTTAAATAGCTTAACGGT 929975 36 100.0 30 NNNNNNNNNN .................................... AAAAAGTTGATATTTTGGTTGCCCAAATAG 930041 36 100.0 30 NNNNNNNNNN .................................... AATCCAACAAACGATACGGATGGTGTTAAT 930107 36 100.0 30 NNNNNNNNNN .................................... TTTGTATAGCTATTTATGTCATAGATATAA 930173 36 100.0 30 NNNNNNNNNN .................................... TAAATGTTGACAAAACACTTGGAATGTTGT 930239 36 100.0 30 NNNNNNNNNN .................................... TGTCCCAGTTTTTGGTGTTCTATTTAATGA 930305 36 100.0 30 NNNNNNNNNN .................................... TAAAGTCCATTAAGCTAACAATTTTACTCA 930371 36 100.0 30 NNNNNNNNNN .................................... TTGGGTCGGTATATGTTGCTAATTTATAAA 930437 36 100.0 30 NNNNNNNNNN .................................... GAATCAAGATAAAAACAAAGTCGTGATCTC 930503 36 100.0 30 NNNNNNNNNN .................................... ATCCATCACTAGAATTTGGTTAGCACGATC 930569 36 100.0 30 NNNNNNNNNN .................................... TTAATTTTCACAATTGCGGTTGATAGTGCT 930635 36 100.0 30 NNNNNNNNNN .................................... TTAAAAAACGCAATTGTATCGTTTTGACGA 930701 36 100.0 30 NNNNNNNNNN .................................... AAAAGCATATTGTAGAAGTTGTAAGTAACG 930767 36 100.0 30 NNNNNNNNNN .................................... TGACTTTAAATGATATCCGCAACATTGATA 930833 36 100.0 30 NNNNNNNNNN .................................... TTATTATCAAAAATGCCAAGACAACAGTCT 930899 36 100.0 30 NNNNNNNNNN .................................... TATTTGTCAATAAGCCGTCTTGAGTTCGTT 930965 36 100.0 30 NNNNNNNNNN .................................... CAAGACATTTTAATGTTACTAAACGGTCTT 931031 36 100.0 30 NNNNNNNNNN .................................... GTTATGCAGATAAGTTTCACACCGACTACT 931097 36 100.0 30 NNNNNNNNNN .................................... TTAAAGTGCCGATAGTTTGTCAGATGTGTT 931163 36 100.0 30 NNNNNNNNNN .................................... TGTCAAATATATAAACGTGTTTTAAGTTAG 931229 36 100.0 30 NNNNNNNNNN .................................... AAAACCAGCTGATTTAGACGACACAAATAA 931295 36 100.0 30 NNNNNNNNNN .................................... TCTTAATCAATGAACCCGCACCATATTTTA 931361 36 100.0 30 NNNNNNNNNN .................................... TTCATTAAACCAGATTTAATTTATGGTGCA 931427 36 100.0 30 NNNNNNNNNN .................................... CTTTTATCATAATACTTATTGTAAAATTCG 931493 36 100.0 30 NNNNNNNNNN .................................... TTTCTTGATATAAGGATATAATATAATCAT 931559 36 100.0 30 NNNNNNNNNN .................................... AAAAACTTGACAAAATTAAAAATAAAAGTT 931625 36 100.0 30 NNNNNNNNNN .................................... AAAATTCTAATTAACATTCATCCAGGTTCT 931691 36 100.0 30 NNNNNNNNNN .................................... TGTCGCTATACCCAAACCCAAGTTTTTCCA 931757 36 100.0 30 NNNNNNNNNN .................................... TTAACTTTAGTTTTTCTGAATTTAGTCTAT 931823 36 100.0 30 NNNNNNNNNN .................................... TATTACAGATATAAAAGAAATTAAAAAGAT 931889 36 100.0 30 NNNNNNNNNN .................................... TTTAATGTGTATTTAGCGTTATGGTTTTTA 931955 36 100.0 30 NNNNNNNNNN .................................... AAAAATAGGTACAAAAAATTGTTTTAAGTT 932021 36 100.0 29 NNNNNNNNNN .................................... ATAAACTGCAATTTTTTCTCGATGAACCA 932086 36 100.0 1 NNNNNNNNNN .............G...................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 106 36 30 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.70,-2.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [78.3-83.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [23,85] Score: 0.18/0.18 # # Final direction: F [0.41,0.18 Confidence: MEDIUM] >NC_005126 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2142057 28 100.0 32 GTATCTAACA ............................ CAAGGGCACGATTTCCCTTTGGTTTTATATGC 2142117 28 100.0 32 TTTTATATGC ............................ GATGTGCGGAACAATTCAGTCTGCAAATACGT 2142177 28 100.0 32 GCAAATACGT ............................ AATCGAAGAGCTTCATCCTTGTGAGTTTCTTC 2142237 28 100.0 32 GAGTTTCTTC ............................ TGTCCAAAGAGTGAAGCCGGTTCCTCCTCCCG 2142297 28 100.0 32 CCTCCTCCCG ............................ GGCTGATGAGACAGTCCGATAATAGAACCCAC 2142357 28 100.0 32 TAGAACCCAC ............................ TGGAATGCGACTTCATCACCATTTTCAATCAT 2142417 28 100.0 32 TTTCAATCAT ............................ TTTACCGAAATCTTTTAGAGCGCTAGTTGTTT 2142477 28 100.0 32 CTAGTTGTTT ............................ AACATTTAAAACATTATTTATTGTTACTGTTC 2142537 28 100.0 32 GTTACTGTTC ............................ ATTTACGTAATGACCAATGACGATGGACATGA 2142597 28 100.0 32 ATGGACATGA ............................ TCGTCGATTTGAACGCGACTCAAGCTGCAATT 2142657 28 100.0 32 AGCTGCAATT ............................ ATACCGGATTGTTAGTAAAACCTATCCACTTT 2142717 28 100.0 32 TATCCACTTT ............................ CATAAGCGGGACTAACCCGCCATTAATCAAGA 2142777 28 100.0 32 TTAATCAAGA ............................ TGTTGAGCAGATGCCAACTCGGGTAGTGTCCA 2142837 28 100.0 32 GTAGTGTCCA ............................ GGTCTCGATGTGCTGGTGGGTATCCCGGCTGA 2142897 28 100.0 32 TCCCGGCTGA ............................ TCACGTCATTTGTACCAATTTACTGACAACAG 2142957 28 100.0 32 CTGACAACAG ............................ ATTAGCGCAGATAACCCCAACTCGGAAGCTCT 2143017 28 100.0 32 CGGAAGCTCT ............................ TCCTATTTTTAAATAAATCATACACCTATGCA 2143077 28 100.0 32 CACCTATGCA ............................ GTTGATAGCTGGCGAGATAGCAGCGGTAAGCT 2143137 28 100.0 32 GCGGTAAGCT ............................ TGTCGTGTTTCATGTAGTAATCTATTGCAACT 2143197 28 100.0 32 TATTGCAACT ............................ ATCAGGAGTACGCAAGAGCCGGACACAGATAA 2143257 28 100.0 32 ACACAGATAA ............................ ACCTATGTGTTCTGCCGACTCTTTAACGTCCA 2143317 28 100.0 32 TTAACGTCCA ............................ AATTAGCGAACAACGTAACATTGTTGATTCTG 2143377 28 96.4 GTTGATTCTG ...........C................ ATTACGCAAGCTGTCACTAATGTTGCGTGCCC ========== ====== ====== ====== ========== ============================ 23 28 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [78.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [131,109] Score: 0/0.18 # # Final direction: F [1.92,0 Confidence: HIGH] >NC_005071 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 17489 19 100.0 38 NNNNNNNNNN ................... TGGTGGCGGCGGTGGCGGCGGTGGATATGGCGGCGGCG 17546 19 100.0 38 NNNNNNNNNN ................... CGGCGGCGGTGGATATGGCGGTGGCGGCGGCGGATATG 17603 19 100.0 35 NNNNNNNNNN ................... TGGTGGATATGGCGGTGGTGGATATGGCGGTGGTG 17657 19 100.0 1 NNNNNNNNNN ....T......G..C.T.. NNNNNNNNNN ========== ====== ====== ====== ========== =================== 4 19 37 GCGGCGGTGGATATGGCGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [381,168] Score: 0.18/0.18 # # Final direction: F [0.59,0.37 Confidence: LOW] >NC_005085 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1293342 32 100.0 54 NNNNNNNNNN ................................ CTTCTGGTCGCGCAAGCCAAAGCCGTCCACGCGCGTCGCGCCCAACGCGGGCGC 1293428 32 100.0 35 NNNNNNNNNN ................................ TGCTCGTATGCTGACATGTGCGGTCGTAATATTGA 1293495 32 100.0 33 NNNNNNNNNN ................................ GGCTGCTTCCTGGGCGCGCTTGCCGGCGAAGAT 1293560 32 100.0 35 NNNNNNNNNN ................................ TTGTCAACGACGCTAATCGTCATCCCCGGCGAGAG 1293627 32 100.0 34 NNNNNNNNNN ................................ TTATGCTCCGGTGCCGCTGCAAGCTGGCGACCTG 1293693 32 100.0 34 NNNNNNNNNN ................................ TTCAACACCGACCTGGCCGAGGTCTACATCCCGG 1293759 32 100.0 36 NNNNNNNNNN ................................ ATAAGTTGAGGCCGACTATACCAGCGAACTGGCATA 1293827 32 100.0 34 NNNNNNNNNN ................................ GTACCCGTGTTGTCCGAACCACTGCTGCCACCGC 1293893 32 100.0 35 NNNNNNNNNN ................................ TCCCGCCTCTCCGTTGGTGAGCGGAGCCTGCCGGG 1293960 32 100.0 34 NNNNNNNNNN ................................ ACCACCGGCGGCGCTGCGCCGTCGCTGCCGCCGG 1294026 32 100.0 33 NNNNNNNNNN ................................ CCTTCAACGCCGCCGCTTCTGTGTTGCGCCTCT 1294091 32 100.0 35 NNNNNNNNNN ................................ CGATGCATGCGCTATCACGGCGAGCTATATATCCC 1294158 32 100.0 36 NNNNNNNNNN ................................ AATGATTTCGCCAGCGATGAAGAGCGCGGCGAGATC 1294226 32 100.0 36 NNNNNNNNNN ................................ AATGATTTCGCCAGCGATGAAGAGCGCGGCGAGATC 1294294 32 100.0 35 NNNNNNNNNN ................................ ATCGTCTCACTCCTTGATGCTGCTCGGCACCGTAC 1294361 32 100.0 34 NNNNNNNNNN ................................ TCGACACGCCGGCGTCGGGCTTGGATGCCATGGC 1294427 32 100.0 33 NNNNNNNNNN ................................ TGACGCCCCCAGCTCATCACCGATGCGCAGCAA 1294492 32 100.0 34 NNNNNNNNNN ................................ GGACAGCTTGGTGATGCCCTGGACGCGGTTGCGC 1294558 32 100.0 35 NNNNNNNNNN ............A................... ATGAACGCTACGGCCTGGGCTTCCACCTTGGCCGC 1294625 32 100.0 34 NNNNNNNNNN ................................ ATCGTCGAATTTGTGCCGCGCGCTAAAACCGGTG 1294691 32 100.0 34 NNNNNNNNNN ................................ TGCGTGTACAACATGCAGGACGTAGAAGCGGAGA 1294757 32 100.0 34 NNNNNNNNNN ................................ GCCGCGGCGGCACCGATCACCGCCATCTGGTCGA 1294823 32 100.0 35 NNNNNNNNNN ................................ AACCAGGCTTCCAGATACTGCGCGCCCAAAATGCC 1294890 32 100.0 33 NNNNNNNNNN ................................ CCATCAAGGGCTTTTACTGCTTCAATAGAGGGA 1294955 32 100.0 33 NNNNNNNNNN .........C.......T.............. ATCTGCATGCATAGACCGAGCAATAGTTTTGAG 1295020 32 100.0 33 NNNNNNNNNN ....T..G.C.T.......A............ AGTTGGAGGGAGGGAGCAGTCGCGCCTAGCTGT 1295085 32 100.0 1 NNNNNNNNNN .GTCGCG..C.T.T...........C...... NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 27 32 35 GTCGCGCCCAACGCGGGCGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [6,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-7.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [193,326] Score: 0/0.18 # # Final direction: F [5.55,0.37 Confidence: HIGH] >NC_005085 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1452780 29 79.3 32 CCGCGTGCTC -----.......C................ GAGGAGTACGAGGCTGCTCGCCGGTCGACGCA 1452841 29 93.1 32 GGTCGACGCA ...C........C................ CCGACCGGATCCCGCGCGGCGTCTGAATCGAG 1452902 29 93.1 32 CTGAATCGAG ...C........C................ TCGCCCATCTCCTCGCGGCGATGCTTCTTGCC 1452963 29 93.1 32 GCTTCTTGCC ...C........C................ CGCCGGCCTCGCAGCCGGCAAACCGCCGAGTC 1453024 29 100.0 32 CCGCCGAGTC ............................. GGTGGGAATCAGCCGGGCGCGATTGTGGGCGT 1453085 29 100.0 32 TTGTGGGCGT ............................. CTTGAGAGCAATCCGTTGACCTGGAAACCGAT 1453146 29 100.0 32 GGAAACCGAT ............................. CTCCATGGCCTGGCCGTAATCGATGGCATTGA 1453207 29 100.0 32 ATGGCATTGA ............................. AAATCCACCACCGCGACCGATAGCGCCACCCG 1453268 29 100.0 32 GCGCCACCCG ............................. TTCACGGTGAGCACGCCCTCGCAGGTAATCAG 1453329 29 100.0 32 AGGTAATCAG ............................. TGATCCGGGCGGAATACAACCACCACGGCCGG 1453390 29 100.0 32 CCACGGCCGG ............................. CTCCAGACTGGTCGTATACACCTGACGGATAT 1453451 29 100.0 32 TGACGGATAT ............................. AGCTCGCTGAGCTGTTCCGCCTCATCCTCGTA 1453512 29 100.0 32 CATCCTCGTA ............................. GCTGGCACGACGCTTGGCGCGATTGTGAAGAA 1453573 29 100.0 32 TTGTGAAGAA ............................. GTCGTTACTGCAACGGAGGCAAAACAGCATCA 1453634 29 96.6 32 AACAGCATCA ............C................ TGCGGCAGACCAAGCCGACCGACAAACCGGTC 1453695 29 96.6 33 CAAACCGGTC ............C................ GCGAGACGATCATCTTGCCGCAACGGCGCGGAA 1453757 29 96.6 32 CGGCGCGGAA ............C................ GCCTCCCACTCAGCAGGGCCCGCCGGCTCGTG 1453818 29 96.6 32 CCGGCTCGTG ............C................ TCGTCGATCTCTATCACACCGGTCGCCGTGGC 1453879 29 96.6 TCGCCGTGGC ............C................ CAATCGCACCAAGGCGTCGGCCGACAACATCA ========== ====== ====== ====== ========== ============================= 19 29 32 GTGTTCCCCACGTACGTGGGGATGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [33.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [393,224] Score: 0/0.18 # # Final direction: R [0,1.05 Confidence: HIGH] >NC_005085 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1461308 29 96.6 32 TGAAATTGGT ...........A................. TCTGGCCTCAGGGCCATCGACATGGCCAAAGC 1461369 29 100.0 32 TGGCCAAAGC ............................. ATGGGATAGTCGCCCAGGAAATCGAACACCAG 1461430 29 100.0 32 CGAACACCAG ............................. ACGTTATTGCCTGGCAGGCCCAGTTCCGCAAA 1461491 29 100.0 32 GTTCCGCAAA ............................. CCTAAAGACCTAGTCGGCCAGCCCTGGCGCTT 1461552 29 100.0 32 CCTGGCGCTT ............................. CCATGTGCGCCGTATCGCATCTTTGTCGCTTC 1461613 29 100.0 32 TTGTCGCTTC ............................. GCTGATCCGAGTTTGCCGCCGCCGCATCAAGT 1461674 29 100.0 32 CGCATCAAGT ............................. CGAGAGGACCGTCCCCGCCGAGGCGTTACCTA 1461735 29 100.0 32 GCGTTACCTA ............................. GGCCGGTTGGAGAGCCTAGGCGTTAGTGTCTT 1461796 29 100.0 33 TTAGTGTCTT ............................. GAACCCGGCCTGCACCATCATCAACGAGACCAG 1461858 29 100.0 32 ACGAGACCAG ............................. ACCGGCCACCACCTGGCCGCCAGCCCGGTTCC 1461919 29 100.0 32 GCCCGGTTCC ............................. GTTACAGATCTTGGTCAGCTGGTGGCAGGCAT 1461980 29 100.0 33 TGGCAGGCAT ............................. CACTGAGGCTGAAAAACCTTGGCCTACTCTGCT 1462042 29 100.0 CTACTCTGCT ............................. GTGGAAGCGT ========== ====== ====== ====== ========== ============================= 13 29 32 GTGTTCCCCACGTGCGTGGGGATGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [181,561] Score: 0.18/0.18 # # Final direction: R [0.27,0.96 Confidence: MEDIUM] >NC_005126 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2126977 28 100.0 32 ATATGTAACA ............................ ACAAGTAACTATTTTCGTTACCGTAACCTTCT 2127037 28 100.0 32 GTAACCTTCT ............................ ATCAAGTAGTGCTTACAAAGGAGAAGAATGTA 2127097 28 100.0 32 GAAGAATGTA ............................ CGCATACCAAGCATCGAATCCCCGTTTAGATA 2127157 28 100.0 32 CGTTTAGATA ............................ TAAACGATAACCCCATGCTTCTAATGATTGAG 2127217 28 100.0 32 AATGATTGAG ............................ TTTCCGCTGTACGTTGTACTGCACTATTTAAT 2127277 28 100.0 32 ACTATTTAAT ............................ ATCAAAGCACAGCAACGAACAGGCAAGGAAAG 2127337 28 92.9 32 GCAAGGAAAG CC.......................... TGATACGTCCACAGGTAGCTATTTTCGTTACC 2127397 28 100.0 32 TTTCGTTACC ............................ AAGGGAGTGGACCAAAGGGTAAACCTCAGTTA 2127457 28 100.0 32 ACCTCAGTTA ............................ AATCAAACTCCAGTCAGTATCGCTATCCGTAC 2127517 28 100.0 32 CTATCCGTAC ............................ GTAAACAAACGAAGTATCGGTCTGCCGCTCTT 2127577 28 100.0 32 TGCCGCTCTT ............................ AGACGTGCTCCTTGGGTCCTCTCATTAAGTGT 2127637 28 100.0 32 CATTAAGTGT ............................ TGCATCCATCAACATTAAGCCCGTTGACGATT 2127697 28 100.0 30 GTTGACGATT ............................ GGTAGCGCCCGATCCCTGATTCAGCTTTAA 2127755 28 100.0 32 TCAGCTTTAA ............................ TTACATAGGCGGCGAGTTCTGCACTGATAGAA 2127815 28 100.0 32 ACTGATAGAA ............................ GAGATGAATGACATTGCGCTTCAATGGCAAAC 2127875 28 100.0 32 AATGGCAAAC ............................ TAACACATCAGCAAGCTGTTGCTGTGGCAAGT 2127935 28 100.0 32 TGTGGCAAGT ............................ ACACGTCAGTTCGATAATAAAATCCAGGTCAT 2127995 28 100.0 32 TCCAGGTCAT ............................ AAAATGAGAGTAAGACGATTAGATAGCGATCA 2128055 28 100.0 32 ATAGCGATCA ............................ TTTCTCTGTATCAATAACCGCTGTTGTGCCGC 2128115 28 100.0 32 GTTGTGCCGC ............................ AATGAAATTAATCGTTTCTCTTACAATATTTC 2128175 28 100.0 32 ACAATATTTC ............................ TACTATGTTGGGATATGCTGCATTATCTAGAA 2128235 28 100.0 32 TTATCTAGAA ............................ TCTTGGCCCACATGCGCCACAACGTGGGATGG 2128295 28 100.0 32 CGTGGGATGG ............................ AGTATGCACCTTGCGGAAAGCGACAAAGTGGT 2128355 28 100.0 32 ACAAAGTGGT ............................ AAATCCCCGGTCGCTATCAGTAATTGCATCAG 2128415 28 96.4 ATTGCATCAG ...........................G CGCGATAACT ========== ====== ====== ====== ========== ============================ 25 28 31 GTGCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [2-1] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [426,42] Score: 0.18/0.18 # # Final direction: F [1.69,0 Confidence: HIGH] >NC_005126 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2475403 28 100.0 32 ATATGTAACA ............................ TGTAAGAACGATACCAAAGACAAGTATTCCCA 2475463 28 100.0 32 AGTATTCCCA ............................ TTGTTTATTCTTAAGAACAACGTAGTAGCTGG 2475523 28 100.0 32 TAGTAGCTGG ............................ TATTAAAGGGGATCAAAATGAATACATCAACA 2475583 28 100.0 32 TACATCAACA ............................ CTTTTGAAGGGCTAAGTGTTGCCGGGCCGATA 2475643 28 100.0 32 CGGGCCGATA ............................ GCAAGTAAACCCGGTGGCTATAATCTCATCTC 2475703 28 100.0 ATCTCATCTC ............................ TGAGTAAGCT ========== ====== ====== ====== ========== ============================ 6 28 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [229,843] Score: 0.18/0.18 # # Final direction: F [1.51,0.18 Confidence: HIGH] >NC_005085 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1462103 29 100.0 32 TCGTTGCGAT ............................. ACCTATTTCTACATAGACTGTATGTAGCAGAG 1462164 29 100.0 32 TGTAGCAGAG ............................. TACGCGCTGCCGTGGAACAAACAGCGGGAGGG 1462225 29 100.0 32 AGCGGGAGGG ............................. CAGCTGGTTCGATACGGCAATTCGGGCCTGAC 1462286 29 100.0 33 CGGGCCTGAC ............................. TACATCACCATCCACGGCGGCGCGAACGTCGGC 1462348 29 100.0 33 GAACGTCGGC ............................. TAGTAATGGCCATCTGGTGCTCTGGGAACAAGA 1462410 29 100.0 GGGAACAAGA ............................. GGCATGACCGGATTTCGCATCGACAGCCGGCGC ========== ====== ====== ====== ========== ============================= 6 29 32 GTGTTCCCCACGCCCGTGGGGATGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [40.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [976,193] Score: 0.18/0.18 # # Final direction: F [0.45,0.37 Confidence: LOW] >NC_005230 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 16310 37 100.0 35 AGGGGGCGGT ..................................... GATTGTTGTGCCCCTGGCGGTCGCTTTCAATGCCT 16382 37 100.0 37 TTCAATGCCT ..................................... TAATCCTAATTAGGTTTGAGTTAGTATCTAGTGCCAT 16456 37 100.0 33 CTAGTGCCAT ..................................... ACAGATTTTGCTTCAGCTAGTACCAAAGGCTAG 16526 37 100.0 37 CAAAGGCTAG ..................................... TCGTAACTACCTTCTAAGTCTGTAGCGATGAATGTGG 16600 37 100.0 37 ATGAATGTGG ..................................... CAAAATATAGGGAAGAATTTTAGAAAGAACCTCAGAA 16674 37 100.0 39 AACCTCAGAA ..................................... AACTAAGGCATCCCATAGCATTCCGCTACGATCTATCAG 16750 37 100.0 35 GATCTATCAG ..................................... TAATAATTGCTGATTAATCGTGGTGGTGGTGGTGG 16822 37 100.0 36 GTGGTGGTGG ..................................... GATATATGGCTAAATATTGCTCAAAAGATTTTAATA 16895 37 100.0 35 GATTTTAATA ..................................... ATTAGATTGGTCGTGTTTTGATTAACGGTGCTAGC 16967 37 100.0 35 CGGTGCTAGC ..................................... TTGCCATCCCAGGCAACATAGCAAGCATGGAGGTG 17039 37 100.0 35 CATGGAGGTG ..................................... TTGCCATCCCAGGCAACATAGCAAGCATGGAGGTG 17111 37 100.0 36 CATGGAGGTG ..................................... TTGCGGACAGACTCGATTAAGTCAATAACAGCTTGG 17184 37 100.0 36 AACAGCTTGG ..................................... CTTGCCCTAATTTTCCTGGTGGAAAAGCCGCTGGCT 17257 37 100.0 35 GCCGCTGGCT ..................................... ATAGCAAGTTGCTAGAGAAAGCGCAACAAAACAAG 17329 37 100.0 34 ACAAAACAAG ..................................... GAGGTTAAATTGTTGTCGATTCAAGAAGACTTGA 17400 37 100.0 36 GAAGACTTGA ..................................... AATAGACACGAATTCCGGTTCCAGACCCAGCCCGTT 17473 37 100.0 35 CCAGCCCGTT ..................................... TTCTTCCATCAGTCCAAGTTCTTCAACAATGTCTA 17545 37 100.0 35 ACAATGTCTA ..................................... TGCTGAAGAAGCTGGAGAGAATCGGGCATCGCTAT 17617 37 100.0 35 GCATCGCTAT ..................................... ATTCCAGATGTGGTGGAAGAAACCTACGCCCCCGA 17689 37 100.0 32 ACGCCCCCGA ..................................... AATCAGCTTCCGGCGTTGCCATTTGGATTCAA 17758 37 100.0 34 TTGGATTCAA ..................................... GTGAGGGGGCCAGATCCCTGCCAGATCCCCCAAT 17829 37 100.0 35 ATCCCCCAAT ..................................... ATTAGATCTTTGGCATAAGGCAACCGAAACTGATC 17901 37 100.0 35 GAAACTGATC ..................................... GATTATCGTGCTTCCTTCGATGCTAACTTTGCTCT 17973 37 100.0 35 ACTTTGCTCT ..................................... TCCATAATGATTCTGCCTCGTTTCTACTTGGTTTA 18045 37 100.0 37 ACTTGGTTTA ..................................... TGTATGTCACGCCATCGGACAGGTAGGGAAAGCCTGG 18119 37 100.0 38 GAAAGCCTGG ..................................... CAACTGGCTAAGCTGGTCATAAGGCTTTGGGAATGAAA 18194 37 100.0 34 GGGAATGAAA ..................................... TCGGGTTTCCCTCCTGGGTAATGACGCCTACGGG 18265 37 100.0 34 CGCCTACGGG ..................................... CAAAGCTGGCACGGAAGCCCTTAAGGATATCCTC 18336 37 100.0 37 GGATATCCTC ..................................... GATGCAGAGATTCCACCACCAAAGGAGAATCCGATAA 18410 37 100.0 37 AATCCGATAA ..................................... AAAGATTGGGACTTTTAACTGCAAAATACCAGGCTAG 18484 37 100.0 41 ACCAGGCTAG ..................................... ATTTGTTGGGCCATCCTGCCCTGTCCATTGAGGTTAAGCGG 18562 37 100.0 37 GGTTAAGCGG ..................................... AAAGATTGGGACTTTTAACTGCAAAATACCAGGCTAG 18636 37 100.0 41 ACCAGGCTAG ..................................... ATTTGTTGGGCCATCCTGCCCTGTCCATTGAGGTTAAGCGG 18714 37 100.0 35 GGTTAAGCGG ..................................... AAGTAAGGTTCAAACGCCGCTACGCAGTCTGGTCC 18786 37 100.0 33 AGTCTGGTCC ..................................... CAAAGTTGGAACGAAAGCTAACGACAAAAACTA 18856 37 100.0 38 ACAAAAACTA ..................................... TTTAGCCATCGTCGGATTCTAATCGATCCAAAAGTCGG 18931 37 100.0 37 CAAAAGTCGG ..................................... AATCCTACCAAGCGGCTTTTGGTGGGCCTGGCTCCGA 19005 37 100.0 36 CTGGCTCCGA ..................................... TTCGGTTGATTGATGAAGATCTGATCGTCGAGTGGT 19078 37 100.0 34 GTCGAGTGGT ..................................... TCCCTTTTCGGGGATAGGTGGTGTCCCTTTTCGG 19149 37 100.0 35 CCCTTTTCGG ..................................... ACTACCAGGGGGAAATTGATGGTATTCCCGGCAAA 19221 37 100.0 35 TCCCGGCAAA ..................................... ACTACCAGGGGGAAATTGATGGTATTCCCGGCAAA 19293 37 100.0 36 TCCCGGCAAA ..................................... GGGCAATGTTAAGCATGGCTAGAAGGAATAGTTAAC 19366 37 100.0 33 AATAGTTAAC ..................................... TTCCATTAATGATTCTTCAAAAATCACTCGATT 19436 37 100.0 36 TCACTCGATT ..................................... ACTGTTACTAGCCACCGCCCAACTCCTTTAATACTT 19509 37 100.0 37 TTTAATACTT ..................................... TCTTCTGTTACGTAGATTTTTCCTGTTTCGCCAACAG 19583 37 100.0 37 TCGCCAACAG ..................................... CATCGCTCCCAGCATATTGTCCTGAACGGTCGGCAAT 19657 37 100.0 34 GGTCGGCAAT ..................................... GATTTTTCCAGTGATGGTGCATACCTAGCCGTAG 19728 37 100.0 32 CTAGCCGTAG ..................................... TAGTCCCTCCCACACTGCCAATATTTCTTCAT 19797 37 100.0 31 ATTTCTTCAT ..................................... TCCGTCTGTATGACTTATACTCGCAAGGATT 19865 37 100.0 CGCAAGGATT ..................................... ACGCCGCCAG ========== ====== ====== ====== ========== ===================================== 50 37 35 CTTTCCTTCTACTAATCCCGGCGATCGGGACTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [8,10] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched CTTTCCTTCTACTAATCCCGGCGATCGGGACTGAAAC with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-7.50,-9.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [214,366] Score: 0/0.18 # # Final direction: R [0.5,0.74 Confidence: LOW] >NC_005085 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1900978 28 100.0 32 NNNNNNNNNN ............................ ATGCCGAAGTTCACAGCCCCTTGGCATTGGAT 1901038 28 100.0 32 NNNNNNNNNN ............................ CGATTTACAGTAGACCGGTGGACCTGGAGGTG 1901098 28 100.0 33 NNNNNNNNNN ............................ CTCACGCTCCTTGGGCGTCACCCATAATTTCAT 1901159 28 100.0 32 NNNNNNNNNN ............................ GGCCAGAAATGGCCTGTTTCCATTTTGGAGAT 1901219 28 100.0 32 NNNNNNNNNN ............................ GCGCAGCAAACAACGGGACCAATTACGGCGGT 1901279 28 100.0 32 NNNNNNNNNN ............................ GCTGCAGCGCTTGCTGCCGCGCGGCCGAGTGT 1901339 28 100.0 32 NNNNNNNNNN ............................ CTGACGCTTGGATGGCTTACCTGCGACCTGTA 1901399 28 100.0 33 NNNNNNNNNN ............................ GTCATCGACCGTGCATTGCCTGTGATGGTTCCG 1901460 28 100.0 32 NNNNNNNNNN ............................ TGGGGCTTTCGAGTGGGTTTTGCTCTCCAGGT 1901520 28 100.0 32 NNNNNNNNNN ............................ AGATTGATTGTTTTGCTGCCGGTATTGGCATT 1901580 28 100.0 32 NNNNNNNNNN ............................ TCTGGGTTCATGAAATGGCCAGGTTTCAGGTA 1901640 28 100.0 32 NNNNNNNNNN ............................ GTTTTCGAGCGAGAGCGAGCGCGGGCTGACCT 1901700 28 100.0 32 NNNNNNNNNN ............................ TCGGTGTGACGTCTATATGGGTGTCTGGGTGT 1901760 28 100.0 32 NNNNNNNNNN ............................ CCGTAGTAGTTGGGTTTGCCCAGCGCGCTGGA 1901820 28 100.0 32 NNNNNNNNNN ............................ TGCTGTGATCGACACCGAACTCACCTGGGCGA 1901880 28 100.0 32 NNNNNNNNNN ............................ ATTCAACAGCCGCAGCAGGGTTGAATTGCGCA 1901940 28 100.0 32 NNNNNNNNNN ............................ GAGTCAGCATTACGCTCAATGGCGGTTCGGGC 1902000 28 100.0 32 NNNNNNNNNN ............................ TTGAACATCACGTATGCGTGGCGTCTTGGACA 1902060 28 100.0 32 NNNNNNNNNN ............................ GCGAAGGGGCGCGTCACGGCAGGGCGGCAGAT 1902120 28 100.0 32 NNNNNNNNNN ............................ TGAAACCGATGCCGCCTTGAGGATGCGGTGCT 1902180 28 100.0 32 NNNNNNNNNN ............................ GGGTTTGCCAGCTACGGCGATCCGGACGGATG 1902240 28 100.0 32 NNNNNNNNNN ............................ CGATGCCGGACACCGTCGTGACGCCCCCGGTC 1902300 28 100.0 33 NNNNNNNNNN ............................ CCGTCGCGTTGGCGATGCTCTGCACCGATGACT 1902361 28 100.0 32 NNNNNNNNNN ............................ CCGGCCAGCGCGAACACCGCGCCCCAGCAGTA 1902421 28 100.0 33 NNNNNNNNNN ............................ CTCCTACCTGATCCAGGCGACCTACCAAGATCA 1902482 28 100.0 33 NNNNNNNNNN ............................ TTTTGTCCTTTCTATTCGTTGATGTGCCGTGAG 1902543 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 27 28 32 TTTCTAAGCTGCCTATCCGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [38.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [225,159] Score: 0/0.18 # # Final direction: R [0,1.01 Confidence: HIGH] >NC_005230 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 68499 37 100.0 36 NNNNNNNNNN ..................................... TGTAGTAGAACCAATCGGGGTCGTCAATAACTCCCG 68572 37 100.0 40 NNNNNNNNNN ..................................... CGGGGCTTGGGGGGTTGGAGTCCCCGCCCCCGTGGTGGGA 68649 37 100.0 42 NNNNNNNNNN ..................................... TGTGAGTTGCATAATGCCTCCTAATGGCTGTTGGACTCATAA 68728 37 100.0 36 NNNNNNNNNN ..................................... CTTGGTATTTGTAGTTCTCGATGAGTGTTTTAGGCA 68801 37 100.0 36 NNNNNNNNNN ..................................... TGATAACGGGATGCCAGCCCTAAAGGTGATGAGCGG 68874 37 100.0 39 NNNNNNNNNN ..................................... CGTTATCCGGCAAAGAAACCACACTACTAAGCTCGACAA 68950 37 100.0 39 NNNNNNNNNN ..................................... TGGGCCGGGCGCGAGTTGTCCTCCTGTCCGAGGCCCCAC 69026 37 100.0 39 NNNNNNNNNN ..................................... CGTTATCCGGCAAAGAAACCACACTACTAAGCTCGACAA 69102 37 100.0 39 NNNNNNNNNN ..................................... TGGGCCGGGCGCGAGTTGTCCTCCTGTCCGAGGCCCCAC 69178 37 100.0 35 NNNNNNNNNN ..................................... CTATTAAGGCTATTTTCGCCACTTCTGTTTGAAAG 69250 37 100.0 44 NNNNNNNNNN ..................................... GTCACACCTCTTCACGAATCCTCACATCATGAATAAGCTGCACA 69331 37 100.0 39 NNNNNNNNNN ..................................... CGCGGGTCGAGATGTCGCTGGACACGCTGGTGCCGGACA 69407 37 100.0 38 NNNNNNNNNN ..................................... CTGGGCGGACTGGAGTTGCCACCTGCCGATGGCCTGCA 69482 37 100.0 41 NNNNNNNNNN ..................................... GAGCCAAAGTCAACTAGCACAGGCACGGCAAGCCATCCTGA 69560 37 100.0 38 NNNNNNNNNN ..................................... TCGTGCATCTGCGCATAGGAAGAGGTTAATTCCTCAAC 69635 37 100.0 38 NNNNNNNNNN ..................................... AACGGGCAGCCCGAGTGGTGGGCATCGAGGTGGTGCTC 69710 37 100.0 40 NNNNNNNNNN ..................................... CCCCGCCACATTTTCGGATTAGAGGATTTGAATCGGCCGT 69787 37 100.0 42 NNNNNNNNNN ..................................... AGTTTCTCAAACTTTTCGGCGATCGCCGTCCAGGTGAGTTGA 69866 37 100.0 43 NNNNNNNNNN ..................................... TAGCGAAAAGTTATAGTTACCTTTGACCGGAGCTACCAACTCA 69946 37 100.0 35 NNNNNNNNNN ..................................... CCCCGCTGCCACGAGGGCAGCTGTAGACGCACCCC 70018 37 100.0 40 NNNNNNNNNN ..................................... TTAAATATACCCATCCCTAATAAAGGATAGAGATCTTGCA 70095 37 100.0 37 NNNNNNNNNN ..................................... GCTCTATTCTAATAACCCAAGCTTTTTTCAATTCTAA 70169 37 100.0 41 NNNNNNNNNN ..................................... CCGCTTGGTAGGATTGACCACCAAAGCTAGAAACAGGCACA 70247 37 100.0 35 NNNNNNNNNN ..................................... AGGGCGGTTAATCACTAGCGGCGATCTAGATATTG 70319 37 100.0 45 NNNNNNNNNN ..................................... TAGACTTCTATTTCCCCTCTTGCCGAGGGATGATACTGCAATTGA 70401 37 100.0 38 NNNNNNNNNN ..................................... TGCGCTCTCTTATCAAACGCCGCAACGCCATCAAGGCT 70476 37 100.0 39 NNNNNNNNNN ..................................... ACGAGCGGAATCTTCTATGGATCGGATCACATCCTTAAT 70552 37 100.0 37 NNNNNNNNNN ..................................... CTGGTGTCGGGGTTGTAGTATTCGTCTCGGTACAACA 70626 37 100.0 40 NNNNNNNNNN ..................................... ACTATAGGGAGCGTTACCCTAGCTAGACATTGCCTAATCT 70703 37 100.0 40 NNNNNNNNNN ..................................... AAGAAGCAGAATAATGCGATTGAGTGGACAAAAATAAGAA 70780 37 100.0 34 NNNNNNNNNN ..................................... GGTTACGTATCGGCGTAACCGCCACTCCTTAGAG 70851 37 100.0 39 NNNNNNNNNN ..................................... CGCCTCCTGCGCCCTGGAGGGGTGATCCTACACCTCGCG 70927 37 100.0 36 NNNNNNNNNN ..................................... GATTCTGGTATACGTTTATCCCACCACTCCTTAGCT 71000 37 100.0 35 NNNNNNNNNN ..................................... CTCGTAAGCTAGGCAACGGCCTTGCTCGATGCACA 71072 37 100.0 36 NNNNNNNNNN ..................................... GGTGCAGCTGCGCCTAAGGAGATGGCTGTACAAGCT 71145 37 100.0 39 NNNNNNNNNN ..................................... CACCTAGAGGGTACCTCCCGGTTAGACCGGGGCTCTTAT 71221 37 100.0 36 NNNNNNNNNN ..................................... AACATGGCCACAACAACCTTCCCGGAGCAAGGGATG 71294 37 100.0 40 NNNNNNNNNN ..................................... GGCGATATTTGGCGTGCCAGCCAAGTGAATTTTGGCGCTG 71371 37 100.0 36 NNNNNNNNNN ..................................... AACATGGCCACAACAACCTTCCCGGAGCAAGGGATG 71444 37 100.0 40 NNNNNNNNNN ..................................... GGCGATATTTGGCGTGCCAGCCAAGTGAATTTTGGCGCTG 71521 37 100.0 40 NNNNNNNNNN ..................................... CTAGCCTTTGTGGCTAACCCTCCTGCGCTTTGACATATAG 71598 37 100.0 35 NNNNNNNNNN ..................................... TTTTACCTCTTGCTCCTGCACAAGCTCAGCCTTAA 71670 37 100.0 36 NNNNNNNNNN ..................................... TCCTCCTCGCCTCTGAGAAAGAGTATGAAACACTGT 71743 37 100.0 37 NNNNNNNNNN ..................................... ATGAACAGATTGCCATCTTCTAGGCGGATAGCCTGGG 71817 37 100.0 40 NNNNNNNNNN ..................................... CGCCCATTGTTTGTGCTTCCGGAAGAAGTCTTTCAACTTC 71894 37 100.0 43 NNNNNNNNNN ..................................... GTTATCACGAGTTATCTTGCGCAAATCTTGTAGTGCATCTTTT 71974 37 100.0 37 NNNNNNNNNN ..................................... TTTAGCGGAGGAGACCTCTTCTATTTCTCCTATAACC 72048 37 100.0 41 NNNNNNNNNN ..................................... GGGAGAACCCTAAAAAGTTCTCCTGTCTAATCGCCACCTGT 72126 37 100.0 35 NNNNNNNNNN ..................................... CGCTCCAGAGTGCGCCGCCGCCGAATTGCGGTCCA 72198 37 100.0 45 NNNNNNNNNN ..................................... GAGACTCTATCTTTGGAGTTTCTAAGACATTGGCGGTTTCTAGGG 72280 37 100.0 41 NNNNNNNNNN ..................................... ATTGCTTGGCGTAGGTTGACTTACCCGAGCCTGGGAGACCA 72358 37 100.0 40 NNNNNNNNNN ..................................... TCCAAGGGCTCTTCGTCTTCAAAGGCCTTAGTTACCTCTG 72435 37 100.0 45 NNNNNNNNNN ..................................... ATAATAAAGCACCCTCAACGGACTATGCCATGAACAACAGGACCC 72517 37 100.0 34 NNNNNNNNNN ..................................... GTTGCCAGTTTTGCCGTTTTTGCTGTTCTGAGAT 72588 37 100.0 46 NNNNNNNNNN ..................................... CCCATAATAATTAGGCTCGCTACCATAAGGGGAAACTTCTTCCAAG 72671 37 100.0 34 NNNNNNNNNN ..................................... GCGCCTGAGGTGGTCAATAGTGACCCCATGGCTC 72742 37 100.0 1 NNNNNNNNNN .......................T............. NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 57 37 38 GTTCAACACCCTCTTTTCCCCGTCAGGGGACTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [8,9] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCAACACCCTCTTTTCCCCGTCAGGGGACTGAAAC with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-9.10,-8.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [53.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [524,101] Score: 0.18/0.18 # # Final direction: F [1.46,0.64 Confidence: MEDIUM] >NC_005090 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1386269 36 100.0 30 CGATAAACCC .................................... TCGCCAAAGAAGTTACCAATCTAATTGAGC 1386335 36 100.0 30 CTAATTGAGC .................................... AAGGTTGATCTTGTTTTCATTGCAACAAGG 1386401 36 100.0 30 TGCAACAAGG .................................... GAATACATCGACACGGCTAGCACCATAACA 1386467 36 100.0 30 CACCATAACA .................................... AGCTTGAGGATGGTACATATACCCTCACAA 1386533 36 100.0 30 ACCCTCACAA .................................... AGCTACATAGCCTGCAACTGAGTCGAAATA 1386599 36 100.0 30 AGTCGAAATA .................................... AAAAGAATGGTACAAGAAGTACGCTAACAC 1386665 36 100.0 31 ACGCTAACAC .................................... CCAAGCAATCATGCCTGAGGGAGGAAGTATA 1386732 36 100.0 30 AGGAAGTATA .................................... ATTTCAGGGGCAAGGAAATAGAAGCTGATG 1386798 36 100.0 30 GAAGCTGATG .................................... CATCAGTATGCTCAGAGCAGACGACAAAGA 1386864 36 100.0 ACGACAAAGA .................................... AGTTCTCCTC ========== ====== ====== ====== ========== ==================================== 10 36 30 GTTATAGCCGCCTACTCAGCCATTCCTCGCTATAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.20,-5.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [58.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [19,70] Score: 0/0.18 # # Final direction: R [0,0.64 Confidence: HIGH] >NC_005230 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 90105 36 100.0 36 AATGGGGGCA .................................... CTTTAGGTGGGCGTTGACCTTTAGATTAGGAATGGT 90177 36 100.0 36 TAGGAATGGT .................................... AGCGCCACAGCTGACAGAGTTCCTGAAGGAAGCTAA 90249 36 100.0 35 AGGAAGCTAA .................................... CTGAGTGATTTTTATCAATTGTCGAGCTTAGTAGT 90320 36 100.0 36 GCTTAGTAGT .................................... ACAGGAGTGTTAGCGCACTGCCTGTCATTACTATTA 90392 36 100.0 39 ATTACTATTA .................................... TTAGATTGCGGGGGCTAGTGACGCCATAGTTTAACGACA 90467 36 100.0 36 TTTAACGACA .................................... AAAGATATTAGGCTATCCTTCGGGGTAGTCTTTCTT 90539 36 100.0 35 AGTCTTTCTT .................................... AAGTGTTGTTGCCTAGTGTTATACCAGAATATCCC 90610 36 100.0 37 AGAATATCCC .................................... CTCATTAGTGCTATCTTCTTGTTGATGGATTAGAACA 90683 36 100.0 37 GATTAGAACA .................................... TCTACTCTGGTGAAGACCAAGTGGATTTCGTGGTGAT 90756 36 100.0 36 TCGTGGTGAT .................................... GTTAGTGCTTGGTTGTGGTTATGCTGCAACTAAGCC 90828 36 100.0 37 CAACTAAGCC .................................... ATCGATATACTTTTTAGCATCAGCTAAATGATAAAAA 90901 36 100.0 35 ATGATAAAAA .................................... TTAGAAAGTTTTGGTTAGTTTCCATTCCTCTTTTT 90972 36 100.0 36 TCCTCTTTTT .................................... TTTCTCCATTGTTAGTTAGTCATTTCCTTGACAATT 91044 36 100.0 36 CTTGACAATT .................................... TGGGATTCATGAACATGTTGATGGTGAATTATACCT 91116 36 100.0 41 AATTATACCT .................................... TGATTAAATTAATATGCGTGATAGATTAACTCATTTTGGTT 91193 36 100.0 35 CATTTTGGTT .................................... TTTTTTGGCATAACTCAGTAAGTCTTTTTTGTTTA 91264 36 100.0 39 TTTTTGTTTA .................................... AATACTAATCTTAAAGATCTTGGTTTAATTACATATCGT 91339 36 100.0 37 TACATATCGT .................................... AACAATTGCAAGGTTTATAAGTAAATGAACAACAACG 91412 36 100.0 38 AACAACAACG .................................... AAATCCAACAACTTCTCCACATTTACTCCACTAGTCTC 91486 36 100.0 40 CACTAGTCTC .................................... CTCCTACTTGTGCAGCCTCTAGTCCGCTTTTTAGATTGCG 91562 36 100.0 39 TTAGATTGCG .................................... GCTTCGCTTCTTTCGCTTTCTCAACATAAAACTCATGAT 91637 36 100.0 35 AACTCATGAT .................................... CTAAAGTATGGTAACTCTGGGTAATTTTTTAACAG 91708 36 100.0 37 TTTTTAACAG .................................... CTTATCTTTTTCTAGCGTAACAAAAGAATAATCAGGA 91781 36 100.0 40 ATAATCAGGA .................................... TTTCAACCAAAAGCTTATTGGCTTCTACGGACTCACGAGC 91857 36 100.0 39 ACTCACGAGC .................................... TCTGAACTACTTTTTTTTCAACGACTTCACCATGGGAAG 91932 36 100.0 39 CCATGGGAAG .................................... AGTTTTAGATGCACCAATTACATCTTCTTCCATAAAGGA 92007 36 100.0 46 CCATAAAGGA .................................... ATTCAAGACCTCCGGTGGTCAGAAGACTGTAGCAACAAAGCTTGAG 92089 36 100.0 39 AAAGCTTGAG .................................... TAGATCAGGCATCCAAACTCTTGGGCGATGTCGCGTAAC 92164 36 100.0 36 GTCGCGTAAC .................................... CGATGTAGCTCATAGCGACCTCGATAATTAATTGAT 92236 36 100.0 39 ATTAATTGAT .................................... ACCAAGCTAGTCACTATCCGATCAACCGTCGTTGCAGGT 92311 36 100.0 42 CGTTGCAGGT .................................... TATCAAGAGTTGTCTAGTCAGTTCCAAGAAAAACCCTGGGAG 92389 36 100.0 41 ACCCTGGGAG .................................... TGACCTGATTCCTCGAGAATTGAGACTCCTAAAGAAATTGC 92466 36 100.0 35 AAGAAATTGC .................................... AGTTCCAGTCGTGCTCCAAGGGCTCTTCGTCTTCA 92537 36 100.0 47 TTCGTCTTCA .................................... AACTTTGGAAAATTGCCTTCATACCATTCTTTTGTTAAACCGTTGTT 92620 36 97.2 37 AACCGTTGTT ...........C........................ AGCAACAAAACAGCCAGCAGCAATTAATAAATCAGTT 92693 36 100.0 39 TAAATCAGTT .................................... ACTCCGTGGCGTCGTACCGGTACGCCTGGGCTTCGTCCA 92768 36 100.0 43 GCTTCGTCCA .................................... TGAAATAACCCCCATAGCGGTGGCCATGGGGGCGTTTTACTAA 92847 36 100.0 40 GTTTTACTAA .................................... ATATCTGTTAGCTCAATTTGAGCAAGTTCATCATTTTTTA 92923 36 100.0 TCATTTTTTA .................................... TAGCTACGAT ========== ====== ====== ====== ========== ==================================== 39 36 38 GTCTCCACTCGTAGGAGAAATTAATTGATTGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: F [matched GTCTCCACTCGTAGGAGAAATTAATTGATTGGAAAC with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-2.80,-1.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [48.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [208,308] Score: 0/0.18 # # Final direction: F [1.28,0.27 Confidence: MEDIUM] >NC_005090 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1531926 37 100.0 37 TCAGAGGGGG ..................................... CCGCATACAGGGCAAACCACATCTATCAATACGCTAT 1532000 37 100.0 36 AATACGCTAT ..................................... TCGGTAAGCTCAATTAAGCCCTGTAATAGTTGCTTC 1532073 37 100.0 36 TAGTTGCTTC ..................................... TAAACCTAGAAAACGGAATACTCGCCGCGCCTGAAA 1532146 37 100.0 37 GCGCCTGAAA ..................................... TCGACAATCACGGTGACGATTTCATGAGCACGCAAGA 1532220 37 100.0 38 GCACGCAAGA ..................................... CTCTTCAAATTCTACAAATGAGGCGGGTTCTACTTTCA 1532295 37 100.0 39 TCTACTTTCA ..................................... ATCAACCCAAACTTTTTTAGTATATAAGCGACTCTTCAA 1532371 37 100.0 34 GACTCTTCAA ..................................... GTTTCGCAGAGTAGCATGAGTGCCACCCTGTATT 1532442 37 100.0 37 ACCCTGTATT ..................................... TCTGTGTAAATATCTGCATTAAACCCAAGTCTTGATA 1532516 37 100.0 35 AGTCTTGATA ..................................... TAGATTTATTGTTTTCCTTCTTCACCCCGCCCACG 1532588 37 100.0 36 CCCGCCCACG ..................................... CATAAGAGTGGCGTTCCTCATACTCATATTAGTTTC 1532661 37 100.0 36 TATTAGTTTC ..................................... TTCTTTCTTGCCCCTTAACTGTTTTTGTTGTGGTAG 1532734 37 100.0 35 GTTGTGGTAG ..................................... ACAACATCAATCTGAGCATCGACGCAGAAGAGTTT 1532806 37 100.0 35 AGAAGAGTTT ..................................... GAGCTCACCGAAGCTTTTCAGTCTGCGCTAGCACC 1532878 37 100.0 35 CGCTAGCACC ..................................... CTGATACTCATAGAGCCTACGAGGCACGGGCTGTA 1532950 37 100.0 38 ACGGGCTGTA ..................................... ACTCCGCAAGAGCGAATCTATCGAACTACAATGTGAGG 1533025 37 100.0 36 CAATGTGAGG ..................................... CAAAAGGGCATTTTAGAGATCTACCCGCTGATGAGC 1533098 37 100.0 35 GCTGATGAGC ..................................... CCGCTTGAAACATTGTATCGAACCACTACCGCAGG 1533170 37 100.0 36 CTACCGCAGG ..................................... TTTTTATCTCTTTGTAGTCAAAACAAATATCAGTTT 1533243 37 100.0 36 ATATCAGTTT ..................................... CCTCAATATGGATGCTTGATTTTGCCATCTTTCCCC 1533316 37 100.0 35 ATCTTTCCCC ..................................... TTGGGAACTGCTCCCAACAGGGTTGTTTCCTTCTT 1533388 37 100.0 34 TTTCCTTCTT ..................................... TTTGACCGAGTGAAATTTCGGGTGCTCAATTCGA 1533459 37 100.0 CTCAATTCGA ..................................... TTTGAAATCT ========== ====== ====== ====== ========== ===================================== 22 37 36 GCAACACTTTATAGCAAATCCGCTTAGCCTGTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-1.90,-2.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [213,232] Score: 0/0.18 # # Final direction: NA [0,0 Confidence: NA] >NC_005126 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2395199 28 100.0 32 TATGTAACAA ............................ ACAGCCGGAAAATTAATGGCAAAGCATTAAGT 2395259 28 100.0 32 AGCATTAAGT ............................ CGTAATTTCCTGCTTATCATTACTCTTTAAAG 2395319 28 100.0 32 CTCTTTAAAG ............................ TACGTTTGCACTCTTCTATATAGTGAGGGTTA 2395379 28 100.0 32 GTGAGGGTTA ............................ CGTAATTTCCTGCTTATCATTACTCTTTAAAG 2395439 28 100.0 32 CTCTTTAAAG ............................ TACGTTTGCACTCTTCTATATAGTGAGGGTTA 2395499 28 100.0 32 GTGAGGGTTA ............................ TGATGCCGACGAACGGCAACAATGCCGGTGAT 2395559 28 100.0 TGCCGGTGAT ............................ TTTGAAAACT ========== ====== ====== ====== ========== ============================ 7 28 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [208,833] Score: 0.18/0.18 # # Final direction: F [1.51,0.18 Confidence: HIGH] >NC_005213 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 13719 28 100.0 40 AGCTATTCGC ............................ GTGTCCAATGAATTAGTGTCTATATTATTATTATAGATAA 13787 28 100.0 40 TTATAGATAA ............................ TTCTTTCGAATACGCTCCAAACACCGATTTCAATTCCTCT 13855 28 100.0 40 CAATTCCTCT ............................ ATCAAAATGAGAACGGAAAAATAACTGTTAAATTGAAAGT 13923 28 100.0 38 AATTGAAAGT ............................ TAGCCAGCAGAATAGAAACTGCAGTAAATGATGCCTTC 13989 28 100.0 39 TGATGCCTTC ............................ AGATAAAGTTATTGAAATAGTAGATTATAATAGAAGATG 14056 28 100.0 40 ATAGAAGATG ............................ CTTCTAAAAAAGTCTATTTTTCATTAACTCCGTCCGCACT 14124 28 100.0 40 CGTCCGCACT ............................ ACTATCGTATACTTGATCGAATGTTGATTTGAATGTTTTT 14192 28 100.0 GAATGTTTTT ............................ CTTTCCTTC ========== ====== ====== ====== ========== ============================ 8 28 39 CTTTCAATATTTCTAATATATTAGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:82.14%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [631,654] Score: 0/0.18 # # Final direction: R [0,4.5 Confidence: HIGH] >NC_005140 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 1694586 35 100.0 34 NNNNNNNNNN ................................... AAAACCACAAGGTTTTCGTAGCCGTTTTGTAGCC 1694655 35 100.0 33 NNNNNNNNNN ................................... ATGCACCTTTTGCATTTAAGATGGTTTCCTGCT 1694723 35 100.0 35 NNNNNNNNNN ................................... ATCAAAGGCTTTACCCTTGATGCATCCTTCAACAT 1694793 35 100.0 35 NNNNNNNNNN ................................... TCTAGTAACCAACGACGCAACATGCTTCGAGCATT 1694863 35 100.0 33 NNNNNNNNNN ................................... TCGTTATGCTGGTTGCTGTTCAGCTCTAATAAT 1694931 35 100.0 35 NNNNNNNNNN ................................... ACCAGCCTCGCAGTAGCGATTCTTTAATCTGGTTG 1695001 35 100.0 37 NNNNNNNNNN ................................... AACTCTTTATCATCCATGTAAACAGCAAATGCAGTTG 1695073 35 100.0 33 NNNNNNNNNN ................................... TATGATCTGTACGATGACCTTGTCCAAAAACAT 1695141 35 100.0 37 NNNNNNNNNN ................................... ACGTTTAGAAAACGAAATCTATTTTTGTTCACCTCAA 1695213 35 100.0 35 NNNNNNNNNN ................................... GCTAAAAACTTTAATCAAATTGGTAAACATTTCCA 1695283 35 100.0 1 NNNNNNNNNN ....................CTG.TTAGCA..AGA NNNNNNNNNN ========== ====== ====== ====== ========== =================================== 11 35 34 GTTTCAGACATGCCCGGTTTAGACGGGATTAAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:51.43%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.90,-5.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [53.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [240,45] Score: 0.18/0.18 # # Final direction: F [0.96,0.27 Confidence: MEDIUM] >NC_005213 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 14354 28 100.0 40 TTTAGTATAA ............................ TGTTGTGTGTTGTTGCCTATATAATATATGATGTTGTGCT 14422 28 100.0 40 ATGTTGTGCT ............................ TTCTATATCATATTTATATGCATATAGTCCCAGTTTGAGA 14490 28 100.0 40 CAGTTTGAGA ............................ GGAACATTTTGTTTTCCTTGAGCAAACTAAATACATCGTC 14558 28 100.0 ATACATCGTC ............................ CCACAGGGCT ========== ====== ====== ====== ========== ============================ 4 28 40 CTTTCAATATTTCTAATATATTAGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:82.14%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1266,288] Score: 0.18/0.18 # # Final direction: R [0.18,4.5 Confidence: HIGH] >NC_005213 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 488561 28 100.0 47 NNNNNNNNNN ...C...C............C..AT.TT CTAGAAACAGTATTTTTGTGTCTCGTCCAGGAATAACCATGTTTCAT 488636 28 100.0 41 NNNNNNNNNN ............................ ACTACAGTGTAATTTGGTCAGCAGGCGTCGGTTGGCTATAA 488705 28 100.0 38 NNNNNNNNNN ............................ TAGCGACAATATCTTCTTCTCTCGTGTATCTCGGGAAT 488771 28 100.0 40 NNNNNNNNNN ............................ TATAGACCGCCATTGCGTATATGCTTAATTCCTTATCCGC 488839 28 100.0 40 NNNNNNNNNN ............................ GAGAAACAATTAAGCTATTATCAATAACATTCACAGCAAC 488907 28 100.0 46 NNNNNNNNNN ............................ TGGAGGACAACGAAAGGTTTTTAAAGGAACAGGGCGAGAATGTGGA 488981 28 100.0 39 NNNNNNNNNN ............................ GTGGTTGGGAGGGAGCCGAAGGGTCCGAAGGGTTCGAAT 489048 28 100.0 40 NNNNNNNNNN ............................ ATGTTGTGTTCTATTGCCACGGATGTATCTGCTATTATGT 489116 28 100.0 40 NNNNNNNNNN ............................ TTGATAAATTCTTTGAAGTTATATGTAATTATCACTCTAT 489184 28 100.0 40 NNNNNNNNNN ............................ ATTTTCAAAGACTCTAAAAATCTGGGGGAAATGAAATTGG 489252 28 100.0 66 NNNNNNNNNN ............................ TATATGAATTGTCTAGGTACTTTTGTGTCTCATCCAAAAATAACCATGTTTCGTTCGAATTTCTGT 489346 28 100.0 41 NNNNNNNNNN ............................ CACATTTATGTATATTATATAATACTTTAAAAGTCTAACAG 489415 28 100.0 42 NNNNNNNNNN ............................ GATCACATACAGGAATTGCTGAAGAAATTGTTACAGGAAAAG 489485 28 100.0 41 NNNNNNNNNN ............................ ATGATAAGATGTTTGCTCAAAAAGCCAAATGCTTTTACACA 489554 28 100.0 36 NNNNNNNNNN ............................ CATCATATTTAAAGAGTTTGAGAACACGATACATTT 489618 28 100.0 43 NNNNNNNNNN ............................ GTGGGTCAATTTAAAGGATATTTCACAAATGTAGAGTTAGAAA 489689 28 100.0 40 NNNNNNNNNN ............................ ATCCTATCAATTCTGGAATCTGATGCTGGATCAAATATAA 489757 28 100.0 40 NNNNNNNNNN ............................ TTCAGGACAAGAACAATGTAAAATAACTCAATTTAACATA 489825 28 100.0 39 NNNNNNNNNN ............................ TCATTCTTAGATAAACAAGATATAGTATTTAGAAAGATG 489892 28 100.0 40 NNNNNNNNNN ............................ ATGGCGGAACATTACAATTGAAGATAGATAATAAGAGTAA 489960 28 100.0 40 NNNNNNNNNN ............................ ATCATTTCTTGTTGTCTCTGAAGCCAAAGAATCTGTAGAG 490028 28 100.0 40 NNNNNNNNNN ............................ CAGTCTTAACTATAATGCATGTTATTTGCCTAACTGATAA 490096 28 100.0 39 NNNNNNNNNN ............................ ATTGCAGTTTATACTGAAGATCCTTCTTAATTCTAGTTA 490163 28 100.0 42 NNNNNNNNNN ............................ ACAGCTAAACATTTATAAATAATTATATTATTATTATCCATA 490233 28 100.0 40 NNNNNNNNNN ............................ TTACATTATCCCTAATTACTATTCTTACTATCGAATTGTA 490301 28 100.0 40 NNNNNNNNNN ............................ TGTTACAAATGTGTATACTACCAATATCAATGCAAATCAA 490369 28 100.0 40 NNNNNNNNNN ............................ TGTTAATGATTATATGCTGAGTTGTTAATAATGTTGTCCT 490437 28 100.0 45 NNNNNNNNNN ............................ TTAATCCCGTTCAAAGTAGCACTTGAATCCAATAGTGAACTCTTT 490510 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 29 28 41 CTTTCAATATTTCTAATATATTAGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:82.14%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [83.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1600,347] Score: 0.18/0.18 # # Final direction: R [0.45,4.91 Confidence: HIGH] >NC_005244 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 2229 19 100.0 19 NNNNNNNNNN ................... TCATATTCTCAAGTTATAA 2267 19 100.0 19 NNNNNNNNNN ................... CATTTTCTGAATTCGCTGA 2305 19 100.0 1 NNNNNNNNNN ................... NNNNNNNNNN ========== ====== ====== ====== ========== =================== 3 19 19 GTGGTGCTCCGAGCACCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [3,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.10,-0.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [50.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [22,42] Score: 0/0.18 # # Final direction: F [0.27,0 Confidence: MEDIUM] >NC_005810 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1223356 28 100.0 32 NNNNNNNNNN .C.A........................ TCTGTACGCATACCGCCATCTTGCATCAGTCT 1223416 28 100.0 33 NNNNNNNNNN ............................ AGCAAAAATCTTAATTACATCTGATGATTTCGG 1223477 28 100.0 32 NNNNNNNNNN ............................ TTTACGGCACGGCGAAAGATTCGGTTCTTGTC 1223537 28 100.0 33 NNNNNNNNNN ............................ TTCTGGATAGGACAAATAGGATGATTGTATCAG 1223598 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 5 28 32 TTTCTAAGCTGCCTGTGCGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [25.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [5,356] Score: 0.18/0.18 # # Final direction: R [0,1.6 Confidence: HIGH] >NC_005835 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1136637 36 100.0 37 NNNNNNNNNN ..AT................................ CGAGGAGGACGTGGCGGAGCTGGTGGAGCTTCTTGGG 1136710 36 100.0 39 NNNNNNNNNN .................................... TGTGGGGTTTGAGGACACTCCCTATGGTCGTGTTCGCGT 1136785 36 100.0 37 NNNNNNNNNN .................................... TGAACCTCTTCCGCGTCCTGCAGGACAGGGAGAGGTT 1136858 36 100.0 47 NNNNNNNNNN .................................... AAGTGGCTGGAAGCGCTGAAACTCAGGGAGCTCGTAGAGGCAGTCCA 1136941 36 100.0 35 NNNNNNNNNN .................................... TAAGCGACAGCCGCGTACTGGCCGCCTTCATCGGC 1137012 36 100.0 35 NNNNNNNNNN .................................... GGAAGTGGACGGGTTGACTCGCACCGTCATCCTTG 1137083 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 7 36 38 GTCGCAATCCCCTTACGGGGCTCAATCCCTTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [7,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.10,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [43.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [13,365] Score: 0.18/0.18 # # Final direction: R [0.27,1.33 Confidence: HIGH] >NC_005823 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1133848 37 100.0 33 NNNNNNNNNN T.CTAA.C......T...................... AGTTTTTCACGGGGTGACGAATGTTTTCCCCTT 1133918 37 100.0 38 NNNNNNNNNN ....................................C CCATAACGATACATTATGGGAAGTTTGGTCCTATGTCC 1133993 37 100.0 36 NNNNNNNNNN ..................................... AATCAAGGACGAATTCTTTTGATCAAAGGATCCTTT 1134066 37 100.0 1 NNNNNNNNNN ..................................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 4 37 35 GTGCTCAACGCCTAACGGCATCAAAGTTATATTCAGA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.60,-7.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [462,37] Score: 0.18/0.18 # # Final direction: R [0.18,1.05 Confidence: HIGH] >NC_005838 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 100454 36 100.0 41 NNNNNNNNNN .................................... TGGGGTATATCCTCTTTATCCCCGGTATTCTTGACAGGTCT 100531 36 100.0 37 NNNNNNNNNN .................................... TTCACAAAATCGTACTTGAGGCAAGCGAAAGCGACGA 100604 36 100.0 38 NNNNNNNNNN .................................... CCCTGAGGGGGAGGAGGAGGTGGCTTGCGGGTAAAAAA 100678 36 100.0 42 NNNNNNNNNN .................................... TTCGAAGCGCCCCGCCCCGAGGCACTTCCCACACCCTTTCCC 100756 36 100.0 44 NNNNNNNNNN .................................... GTGCTCCTTCAAACTCCTCTCCAGAGCCTCCTGGATCAGTTCAT 100836 36 100.0 41 NNNNNNNNNN .................................... TCCTCTATCGCCTTGGCGATGACGCCCCTGATGGCCTCGCG 100913 36 100.0 40 NNNNNNNNNN .................................... ACTCCCTCTACGCCCCCTAACTCGCGGTACGCGAAGAGGG 100989 36 100.0 36 NNNNNNNNNN ........A........................... GACAGGTAAGGGTGTAGAGGTCGTCCAGCTTCATAA 101061 36 100.0 37 NNNNNNNNNN ........A........................... AAGTGAGGATGTACCCCCGCCCCTTGAGCTTCTTCTC 101134 36 100.0 37 NNNNNNNNNN .................................... CTTTGCGCCGCGCGGCCTAGCGCCGACCGCGTATCCC 101207 36 100.0 37 NNNNNNNNNN .................................... CTTTAAGGGAGTCGCCTTCGCCCACGTCTTCCTTGGT 101280 36 100.0 38 NNNNNNNNNN .................................... GCGAGGAGCCGCCGCACCCCGATGATGCGCCCCTGGTC 101354 36 100.0 40 NNNNNNNNNN .................................... TCCTTCTTTGGGCCAGCTGATGCCCCAGGCAAGCCCCGGT 101430 36 100.0 41 NNNNNNNNNN .................................... GCTTCTCCGTTGCGCTGAGTTCGCCGTTGCTCCAGACATGG 101507 36 100.0 42 NNNNNNNNNN .................................... GTGTGGCCGCGGCTGCGCGCCGCGCGGCCCTTGCGCCCATGC 101585 36 100.0 1 NNNNNNNNNN ..............................G..CT. NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 16 36 39 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.00,-7.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [33.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [144,38] Score: 0.18/0.18 # # Final direction: F [1.33,0.27 Confidence: HIGH] >NC_005838 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 131658 37 97.3 38 GGCGTTGGGG .................................T... CTGGCCGCCTGGCTCTTAATGAGCTGGAGCACCTGGTG 131733 37 100.0 34 GCACCTGGTG ..................................... GCGCTCTCCGCCTGTAGGTCCAGGCCGAGGACCT 131804 37 100.0 38 CCGAGGACCT ..................................... ACCCAGTTGCCCCTAACCACCCAATAGAACCACCCATA 131879 37 100.0 37 ACCACCCATA ..................................... CCGGGGCGCGCCGGACGATCTCCCGCAGGCCCTCCAC 131953 37 100.0 37 GGCCCTCCAC ..................................... CCCCCCCTAGTGGGTCCTCCACCAGGGCCCCGCCGCA 132027 37 100.0 38 CCCCGCCGCA ..................................... AGGCGGAGCTCGGCGAGGATCTCCTCGTGGTGGCGGCG 132102 37 100.0 37 GGTGGCGGCG ..................................... CCTCTAAGACGGCCTTCTCACCTATGACCTCCTCCGG 132176 37 100.0 CCTCCTCCGG ..................................... TCCCCCCTATA ========== ====== ====== ====== ========== ===================================== 8 37 37 GTTTCAATCCTCACCGGCCCTTTCGGGCCGGTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [5,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-17.10,-18.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [25.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [94,27] Score: 0.18/0.18 # # Final direction: R [0.18,5.92 Confidence: HIGH] >NC_005838 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 153106 36 100.0 42 GGGGGGTACC .................................... GGCCCCTGACGAGGTTCCTAGGTGAGGTCGGTCTCCTTCTGG 153184 36 100.0 37 CTCCTTCTGG .................................... CCCCCGTGTGGGAGGTGGACCTGGGGGGCCTCGAGAT 153257 36 100.0 40 GCCTCGAGAT .................................... GCTCCGGGTGGGCCCCGTCCTCCTCGGGCCCGAGAGGAGA 153333 36 100.0 37 CGAGAGGAGA .................................... TGATGCTGATCATTGCTCACCTCCTGCCCGGAGGTGG 153406 36 97.2 42 CCGGAGGTGG ...............G.................... AAATGCGGTCCTGGAGTGGGAATACAACGAAGTTTCCGTTCA 153484 36 97.2 TTTCCGTTCA ...............G.................... ACGGTACCGGCGAAGGACTTGGCCACACCTTGAATGACCGTCAT ========== ====== ====== ====== ========== ==================================== 6 36 39 GTTGCAAGGGATTGAACCCCGTAAGGGGATTGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [9,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.10,-6.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [660,93] Score: 0.18/0.18 # # Final direction: F [0.92,0.27 Confidence: MEDIUM] >NC_005838 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 138645 36 100.0 35 ATAGGGGGGA .................................... CCCCGCGCACCCCTCCACGGGGCATAGCAGGTCAT 138716 36 97.2 43 AGCAGGTCAT ......T............................. CGGGGCGGGCCGCCATATCTGTACCCGCTCTAGAGCAACTGGA 138795 36 97.2 36 AGCAACTGGA ......T............................. CCGGGAGGAGGCGCTGGAGGTGCGGAGCTACGAGGC 138867 36 100.0 39 GCTACGAGGC .................................... CCCCTCAGGGTCCGTTACTTCCACAAAAGTTTTAAAGTG 138942 36 100.0 40 TTTTAAAGTG .................................... CGCACAGCTTTCGGACGGTGGCTGGCGAAACCCCCAACTC 139018 36 100.0 40 CCCCCAACTC .................................... TATGCCCAAGAGGTTGAGCACGCTGCACCTCCTTGCCGAT 139094 36 97.2 34 CCTTGCCGAT ............T....................... CCCGCCCGGTCCCTGGAGCACCAGCCTGTCCCAC 139164 36 100.0 CCTGTCCCAC .................................... CAAACTTGCC ========== ====== ====== ====== ========== ==================================== 8 36 38 GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [9,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-18.00,-17.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [33.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [111,57] Score: 0/0.18 # # Final direction: F [5.65,0.27 Confidence: HIGH] >NC_005838 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 191888 36 100.0 36 TTGGGCTGCA .................................... ACCGCCACCGCCAAGATCCAAGCGCCCTGCATCCCT 191960 36 100.0 36 CTGCATCCCT .................................... GATGGCGAGGACGGCCACGTTGAGGTCCCGGGCCAG 192032 36 100.0 36 CCCGGGCCAG .................................... GAGGGAGGCTGGTAGGACTCCATGCCGGGGTAGCGG 192104 36 100.0 37 GGGGTAGCGG .................................... TCTCCCTGGGCCGGATGCGGTGCCCCCTCCGGTCCCC 192177 36 100.0 37 TCCGGTCCCC .................................... CCTATCTCGTCTTCCGCCTCTGGAACTTCTCCGACAC 192250 36 100.0 37 TCTCCGACAC .................................... TCAGTATACCACAGCTCTGCGGCGGGTGCTGGAGAAG 192323 36 100.0 GCTGGAGAAG .................................... GGCCCCCTCCA ========== ====== ====== ====== ========== ==================================== 7 36 36 GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.80,-4.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [30.0-28.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [25,241] Score: 0.18/0.18 # # Final direction: R [0,5.05 Confidence: HIGH] >NC_005838 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 203222 36 100.0 36 NNNNNNNNNN .................................... TCCGGCTCGTGAACGGCGAGATTCAGATCATTCCCG 203294 36 100.0 35 NNNNNNNNNN .................................... CATCACCTCGGCCCGGGCCAGGACCACCCCCACCC 203365 36 100.0 38 NNNNNNNNNN .................................... CCGCCTGGCTCGCCGGCCCCATCGCCCGCCTCTGGCAG 203439 36 100.0 36 NNNNNNNNNN .................................... CGCTATGGACCGAAACGACTGCCCACTCGCGAGCGC 203511 36 100.0 37 NNNNNNNNNN .................................... AACACAGCGTAGACCGTAACGGCCCCCAGCGCGATGC 203584 36 100.0 37 NNNNNNNNNN .................................... CCGAACCGCCGCCTCAGCGCGGTGAGGACCTCGCCCA 203657 36 100.0 34 NNNNNNNNNN .................................... GTGCGGCTCGTGACCAAGTAGCCATGGGGTACTT 203727 36 100.0 36 NNNNNNNNNN .................................... TTCGGAACCCGCCTGGAGTACGCCCCATATCAGCAG 203799 36 100.0 35 NNNNNNNNNN .................................... CGCTGGGCGGGGATCGCGGCGAGCGTGGTCCTCCC 203870 36 100.0 37 NNNNNNNNNN .................................... TGTACGCCCTGCGAAACTTTGTGCTCCAAAGCGTGGT 203943 36 100.0 38 NNNNNNNNNN .................................... AGGGCCTCGAGGCCCTTCACCAGGAGGCCGAGGCGGCG 204017 36 100.0 35 NNNNNNNNNN .................................... CTGAGGGAGCTGGTAAACGAGCTTGGGAACGCCTG 204088 36 100.0 36 NNNNNNNNNN .................................... ATTCGCCGCCTCCCAGTAGCCGCGCCACCACCTCAG 204160 36 100.0 1 NNNNNNNNNN ............T....................T.. NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 14 36 36 GTTGCAAACCTCGTTAGCCTCGTAGAGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.90,-3.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [26.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [240,13] Score: 0.18/0.18 # # Final direction: F [5.46,0.27 Confidence: HIGH] >NC_005838 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 212720 36 100.0 41 TTGCCTACAA .................................... AAGGCAGGGGAGTTCGGCAAGAAGCTTGAGCAGTACTTCAA 212797 36 100.0 41 AGTACTTCAA .................................... AGAAGCCCTCTACACGGGCGAAGAAGCCCTCTACACGTACG 212874 36 100.0 45 TACACGTACG .................................... ATTTGAAAGAGGCGAAACCAGGGCCCTCCTCCCTGGGTCGCAATC 212955 36 100.0 37 GGTCGCAATC .................................... CCCTAGTGGAGGTGAGCCTTGAGGCGTAAGCTGAAGT 213028 36 100.0 42 AAGCTGAAGT .................................... CGAGGGCGATCCTCGCACTCAGGCCAGAAGGCAGTCCAGAAA 213106 36 100.0 40 AGTCCAGAAA .................................... GTAAGGTGTTAAGAAGCGTGTTTTTCGGACTTGGGGCGGC 213182 36 100.0 41 TTGGGGCGGC .................................... GGAGGCCTTGTCGGACCCCGAGGCCGCCCCTCTCGCCCGGG 213259 36 100.0 40 CTCGCCCGGG .................................... TAAGCCCCAAGGAAGGGAGTTTGCGTGGATCCTGAAAGAG 213335 36 100.0 CCTGAAAGAG .................................... GGTACCCCCC ========== ====== ====== ====== ========== ==================================== 9 36 40 GTCGCAATCCCCTTACGGGGCTCAATCCCTTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [7,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.10,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [88,365] Score: 0.18/0.18 # # Final direction: R [0.27,0.92 Confidence: MEDIUM] >NC_005838 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 92158 36 100.0 38 CTTCACTGCT .................................... CGCGATGACGATGCAGGGCGCCGAGTGAAACGTTAAAG 92232 36 100.0 41 AACGTTAAAG .................................... ATCACCTTCTTAGGTGTCGGGTTCCTTTTTGCCGTTCTAAC 92309 36 100.0 44 CCGTTCTAAC .................................... ACCAAGATGTAGTCATCCCCAAAGTCCTTGACGAGCTTAGTCAT 92389 36 97.2 GCTTAGTCAT ..................................C. TCGCGGGG ========== ====== ====== ====== ========== ==================================== 4 36 41 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.00,-7.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [43.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [55,31] Score: 0/0.18 # # Final direction: F [1.42,0 Confidence: HIGH] >NC_005863 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 175898 32 100.0 33 ATGGCCGACA ................................ CAGTCTCGTTACCCTGTCGCGGAGGGCGTCGAT 175963 32 100.0 35 GGGCGTCGAT ................................ GCCATGCTCAGGCTGGCGAGTGCGCCACTCATCAA 176030 32 100.0 36 CACTCATCAA ................................ CTTGTTTGGAGGCACCAAGAATCAATCAGGCATCGC 176098 32 100.0 33 CAGGCATCGC ................................ TTGAGCGCGGCGAGTGCGTGGACATCGTGGCGA 176163 32 100.0 34 ATCGTGGCGA ................................ ATCACACACCTCGCTTGCTCTACGTTCCTGCATC 176229 32 100.0 32 TTCCTGCATC ................................ CAGTTGGAGGAAGACCATCAACAGTTCCATAG 176293 32 100.0 34 AGTTCCATAG ................................ ACGCCGCCGGTCGCGCCGTGCTCAAGTGCATTTG 176359 32 100.0 35 AGTGCATTTG ................................ TGCGATGCACTGCACCGCCATGCCAGCCTGCGCCG 176426 32 100.0 35 GCCTGCGCCG ................................ CGCGCCGCAGGGTTTCAAGCCGCCACGCTGGACGG 176493 32 100.0 35 CGCTGGACGG ................................ TCAACGCCCACGCCCTCCGCGATGCACAAGTGGCG 176560 32 100.0 35 ACAAGTGGCG ................................ GCCCCGACCGACATGGTGCAGCGTGCCATCACGGG 176627 32 100.0 33 CCATCACGGG ................................ GGCAGAAGGCGCGTGAGGTCGCAGCCGAACTTG 176692 32 100.0 33 GCCGAACTTG ................................ CGAAGAATTACGCGCAGTACGAAATTGACGAGC 176757 32 100.0 36 ATTGACGAGC ................................ ATGGCGGTTGCTGACGTTGCGATGATGCAGCGGCAC 176825 32 100.0 33 GCAGCGGCAC ................................ AAGTCGCAGGCTTGCGAAGCCTACACGCGCAAG 176890 32 100.0 34 CACGCGCAAG ................................ ACGGTGATGCCAAGAAGTGTCACAAGCTCGTAGT 176956 32 100.0 33 AGCTCGTAGT ................................ AGCCTCAACGCGCACGGGGCAGTGTACTCCGCG 177021 32 100.0 33 GTACTCCGCG ................................ TCCCTGGCGGCGCAGAGCGTACTGTTCAGGGAT 177086 32 100.0 33 GTTCAGGGAT ................................ GATCTCATAGGCGTTATGGAGCGTGGCTCGTGA 177151 32 100.0 34 TGGCTCGTGA ................................ ATCCAGATACCGCAGGATGATGACAACTACCTGT 177217 32 100.0 33 AACTACCTGT ................................ AACATCGGAACGGATGTTGACCGTGTTGGTGGA 177282 32 96.9 34 TGTTGGTGGA ..........G..................... GACCTGCCGGTGGTGACAACGGCAATCCTGTTGC 177348 32 100.0 34 ATCCTGTTGC ................................ TACTATCCCCAAGCCGCCCGTCTCGAATCGGCAG 177414 32 100.0 35 GAATCGGCAG ................................ CTGTGCATCGGTTGTGGCAGGCGTTGCAGCCTGAA 177481 32 100.0 35 GCAGCCTGAA ................................ ACCTGATCGATACGGTTATGCCCGTAACGCTGCGC 177548 32 96.9 33 AACGCTGCGC ..........G..................... GCGGGCGGGGGCGGTGCATCGCTCGGCATCGAG 177613 32 100.0 35 CGGCATCGAG ................................ AGCGAAAGTGCCCACGCATCAGTCACCTTGGCTAT 177680 32 93.8 CCTTGGCTAT ........T.G..................... AGCTCTCCCTCTTTGACGACAGCGCGGCACGCC ========== ====== ====== ====== ========== ================================ 28 32 34 GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.20,-11.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [40.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [180,118] Score: 0/0.18 # # Final direction: F [5.55,0 Confidence: HIGH] >NC_005871 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 39353 29 100.0 33 NNNNNNNNNN ....A..T..................... TTGTGGGATATTTAACGGAAGCTAAAGTGGATG 39415 29 100.0 32 NNNNNNNNNN ............................. TTAATGAATCTAAGTGAAGCCGTTAACGTTAT 39476 29 100.0 32 NNNNNNNNNN ............................. TTAATGGGTGCAGTGGGTACGGGTGACAACTT 39537 29 100.0 32 NNNNNNNNNN ............................. AGCAACAACAGGCTTTCGGTTCGAACCTCAAC 39598 29 100.0 32 NNNNNNNNNN ............................. CGATACGTTAGAGTTCATCGCTAGAATGAACC 39659 29 100.0 32 NNNNNNNNNN ............................. ACAAAAAGCTATCTGGTGCTGTAGTTCTATAT 39720 29 100.0 32 NNNNNNNNNN ............................. AGGTTCAAGGGACAACGGCCCAACTGTTACAA 39781 29 100.0 32 NNNNNNNNNN ............................. TTCGAGGGCGCACATTCAATTAAACGGGTGTG 39842 29 100.0 33 NNNNNNNNNN ............................. TTTCCCATCCTCGCGCTTTCTATTTTTGGAACA 39904 29 100.0 32 NNNNNNNNNN ............................. ATCAGTGATCTTAATGCTACAGCTTGATTCAA 39965 29 100.0 32 NNNNNNNNNN ............................. ACGTTGTGCCATTTATCTCGCTAATCTCACCG 40026 29 100.0 33 NNNNNNNNNN ............................. GTAGCAAGCTGAGTCAGTAAGATAGATACCATC 40088 29 100.0 32 NNNNNNNNNN ............................. GTTGATGAAACAAACCGACCTGATTCAACCGA 40149 29 100.0 32 NNNNNNNNNN ............................. TACACCAAAAGCCCCATCAGGCACGCCGGAAG 40210 29 100.0 32 NNNNNNNNNN ............................. ACCTTACCGATCACTTTAATGATGACCGCATT 40271 29 100.0 32 NNNNNNNNNN ............................. TACATACGTTGGGTTGTGAACATGTGATTCTC 40332 29 100.0 32 NNNNNNNNNN ............................. ATATTTATCCGAAACTTACCCTTTCCTATATC 40393 29 100.0 32 NNNNNNNNNN ............................. TATCAGGGTATTGCTCTTTGAACTCGTCAATG 40454 29 100.0 32 NNNNNNNNNN ............................. ATGGCTATGAAAACTCAAATAGCAATATGTTA 40515 29 100.0 32 NNNNNNNNNN ............................. TCCATACAGAACGCCGTGGAAAACCGTGTGCG 40576 29 100.0 32 NNNNNNNNNN ............................. AAAGAAGGTAGTTCTGAAATTGCGGATACCAC 40637 29 100.0 32 NNNNNNNNNN ............................. TTGTTCAACTCGTCGATGATGTCCGGCATGTC 40698 29 100.0 32 NNNNNNNNNN ............................. TCTTCATCAGTACCGTTCGGAATATTCCCGTA 40759 29 100.0 32 NNNNNNNNNN ............................. GCTAGGCCTAGAACGCTTCGGATACCTGTTAA 40820 29 100.0 32 NNNNNNNNNN ............................. TTTCTCGTGGTCAACTCTTACATGGAACATTG 40881 29 100.0 32 NNNNNNNNNN ............................. CTCTACCTGAGTTTCCTTTTTATTCTCAGCAT 40942 29 100.0 32 NNNNNNNNNN ............................. CTGGCATCGATAAGCGTGACCGCGATGCGGAA 41003 29 100.0 32 NNNNNNNNNN ............................. CGTTGACAGTCTAGCGTTCATCTCATTCATTA 41064 29 100.0 32 NNNNNNNNNN ............................. GCCGTCCATGCAGTAACCGTCCTGAGAGAACG 41125 29 100.0 32 NNNNNNNNNN ............................. GATTTACTAGTTACGCTAATTCTAATTAGTGG 41186 29 100.0 32 NNNNNNNNNN ............................. ATTTGAACGTTACCTGGTGGTGTTTTCTCGCC 41247 29 100.0 32 NNNNNNNNNN ............................. TCAGGTAGTGCATTCAAGGTAAATGATGGTGA 41308 29 100.0 32 NNNNNNNNNN ............................. ACCGCCTGAAAGCCACGAAGGTTACAAGGTAA 41369 29 100.0 32 NNNNNNNNNN ............................. AAAAAGAGGTATAAAGTCAAACCCCTCACCCT 41430 29 100.0 32 NNNNNNNNNN ............................. ATGCTTGGGTGATCTCAACATGATTTTGCCGT 41491 29 100.0 32 NNNNNNNNNN ............................. TGTATCTCCCAATTGGGCACTAACCTTCGAGT 41552 29 100.0 32 NNNNNNNNNN ............................. TTTAACAGCGTGTCCCATTGGTATTTCATAAC 41613 29 100.0 32 NNNNNNNNNN ............................. ATTCAGCCTCATTTTTGTCATTGTCCTAGCTC 41674 29 100.0 32 NNNNNNNNNN ............................. GCGATAAATGCCAGCATCCATTTTTTTGCATG 41735 29 100.0 32 NNNNNNNNNN ............................. ATCTCATTATCTGGCCACAGAAAACCAAGATG 41796 29 100.0 32 NNNNNNNNNN ............................. ACTTTCATAACATCAAATAACTGGAGTAAGAC 41857 29 100.0 32 NNNNNNNNNN ............................. CACACAATTGCAGTCTTCACAGAATGGCTTTA 41918 29 100.0 32 NNNNNNNNNN ............................. TGTATCGAAATGATGCACAACCAGTACGTCAC 41979 29 100.0 32 NNNNNNNNNN ............................. CATTGCATGTGCGTAATCGTCAACTTTGATTG 42040 29 100.0 32 NNNNNNNNNN ............................. GCAGCAATGAGTTTTATTGGTGAGTCGAGAGA 42101 29 100.0 32 NNNNNNNNNN ............................. CGGGAACAGTTACGCCCCGCGTTGGCTGATTA 42162 29 100.0 32 NNNNNNNNNN ............................. ACGAACAGAAACCTGATAGTAGGCATAGTCAA 42223 29 100.0 32 NNNNNNNNNN ............................. GCGTAAAACGCCCTTTGATTGTTGTTTGGTTA 42284 29 100.0 32 NNNNNNNNNN ............................. GGTCGTATGCCTATGGCTTCGGTTGGTATGGA 42345 29 100.0 32 NNNNNNNNNN ............................. CATCAACGATTATCGAAGATGGCGTTATCAAG 42406 29 100.0 32 NNNNNNNNNN ............................. ATTCAAAGTTGATTCAGTGGAAGAACTTGTAA 42467 29 100.0 32 NNNNNNNNNN ............................. CTCACCCAGTGTCACATTACATTTTTTGTATG 42528 29 100.0 32 NNNNNNNNNN ............................. CTACAAGCCCGTATGTTAGCCGGTGGGGGTGC 42589 29 100.0 32 NNNNNNNNNN ............................. GTGATGGCAAAACGTTGGGGTACCGCTCCTGG 42650 29 100.0 32 NNNNNNNNNN ............................. TTCGTCGTACCGTTGGCTCGCATGGTGCAGCT 42711 29 100.0 32 NNNNNNNNNN ............................. GTAAACGATTGCTGGCTTACTGGGCTGCTAAA 42772 29 100.0 32 NNNNNNNNNN ............................. GTGGCCATGTTGCTGCCCGTTACTACAAAGAA 42833 29 100.0 32 NNNNNNNNNN ............................. ATTCCTACTCGCATTTGCTAAGCGATTGCTAG 42894 29 100.0 32 NNNNNNNNNN ............................. ATGTGACATGCCTTGAAGGTGATGTTAATTGG 42955 29 100.0 32 NNNNNNNNNN ............................. ATGAAGAGCGACAACAGCGGCTTTTGCTTTTT 43016 29 100.0 32 NNNNNNNNNN ............................. ATCGCGACAAGAGCAGCGGCGATTACTGATCA 43077 29 100.0 32 NNNNNNNNNN ............................. TTCTTTCATTGCTGCCTGCTCAGCCTGCTCAG 43138 29 100.0 32 NNNNNNNNNN ............................. TGTAACACAGATGTTCCACTTGTCGCCCTAGC 43199 29 100.0 32 NNNNNNNNNN ............................. AGATTGAAAAACAATACCATCAGATCCTATTA 43260 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 65 29 32 CGGTTCAGCCCCGTGAGTACGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-10.60,-10.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [286,79] Score: 0.18/0.18 # # Final direction: F [0.92,0.68 Confidence: LOW] >NC_005877 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 14 31 100.0 35 AATTCGGATA ............................... CTGGATTTCCTTGGCCATATTTGCCGAGATACTAT 80 31 100.0 35 GAGATACTAT ............................... ATATATCGGATTTCAAACCCTTATAGATAGACTAG 146 31 100.0 35 GATAGACTAG ............................... GCCAGAGGCATTTCTCCGTGCGTGGTCCTTTAATG 212 31 100.0 36 TCCTTTAATG ............................... ACAACAGGCAAAAACAGAATTAAGACTGGCCATTGA 279 31 96.8 TGGCCATTGA G.............................. CCGTTTCTAAT ========== ====== ====== ====== ========== =============================== 5 31 35 ACTTTCAATCCTATTTAGGTTATTATTTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:77.42%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.30,-1.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [61.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [15,216] Score: 0.18/0.18 # # Final direction: R [0.41,5.32 Confidence: HIGH] >NC_005877 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1540318 30 100.0 35 NNNNNNNNNN ....................G......... TCCGCCGAATTTCAAACACTTATAGATGGACTAGA 1540383 30 100.0 36 NNNNNNNNNN T............................. TATCTCTCTTTTCATTCCTTATCGATTTATCGATCC 1540449 30 100.0 36 NNNNNNNNNN .............................. CACGGTGGTGATGCAACGATAAGATCAACATTATCA 1540515 30 100.0 37 NNNNNNNNNN .............................. TCCATCTAAAGACATTCTCTCTAAATATATCAAAGCC 1540582 30 100.0 35 NNNNNNNNNN .............................. TTTTTCCGCATAGAAAAGCCATTCTTTTCTCTGTA 1540647 30 100.0 39 NNNNNNNNNN .............................. CAGATGCGACAAAAATTTAACATCACTCGTGCTTTATCT 1540716 30 100.0 38 NNNNNNNNNN .............................. AATTTTAAACTTTTTGATACACATGTTTTTGTAAAATA 1540784 30 100.0 39 NNNNNNNNNN .............................. TGAATTTGTTATATTTGTGTTTATAAAGTTATTTCCAAT 1540853 30 100.0 36 NNNNNNNNNN .............................. TTATTTTCAAGTAAGCTATAAAGAAGGCTTTGATTT 1540919 30 100.0 37 NNNNNNNNNN .............................. TAAGACTATTACCATATTAAAGAAAAAGCCAAAAAAT 1540986 30 100.0 35 NNNNNNNNNN .............................. AAGTTCAGATAACGAGCTCTCTGCAAATGGGTATT 1541051 30 100.0 37 NNNNNNNNNN .............................. GAAAAAAATAAAAATGACTGACCTTTTCCTGACTGAA 1541118 30 100.0 37 NNNNNNNNNN .............................. CCTATTCTTTGCACATTGATAATGTACCAGGATACAT 1541185 30 100.0 39 NNNNNNNNNN .............................. CAGAACAAGGCCATGTCTACTGTGGCACAGTCATTTAGA 1541254 30 100.0 38 NNNNNNNNNN .............................. AAAGGGATAGAGCTGGCAAGGTTTGATAAAGGGACTAC 1541322 30 100.0 38 NNNNNNNNNN .............................. TATTAAATACTATAAGTGATTACGAATTTTAATCAAAA 1541390 30 100.0 36 NNNNNNNNNN .............................. TTCTCTTTCCGACGCTCTGGAACATTCTGCTCAACT 1541456 30 100.0 40 NNNNNNNNNN .............................. TCAAAGGTATAATCGGGACTTAATAACAAAAGCATTGCTA 1541526 30 100.0 39 NNNNNNNNNN .............................. ACCTATCCGTATAATTCATGTCCTTATTCTATATCTTTA 1541595 30 100.0 35 NNNNNNNNNN .............................. TATAAAGACCTTCAAAGACGCTTCAATTCTCTAAA 1541660 30 100.0 38 NNNNNNNNNN .............................. AATACCTCATCGGGAATGCGTCGTACACCTGGTTCGAA 1541728 30 100.0 37 NNNNNNNNNN .............................. TGAAAACCCCGTTAGATGCATCGCATGAATAGGCGTC 1541795 30 100.0 44 NNNNNNNNNN .............................. CAGGAGTATAGAGGGGTTGCTATGAATAAAATCTTTAATAAAAG 1541869 30 100.0 38 NNNNNNNNNN .............................. TATAGGCATGGCTTTATCTTTGACAACGATTATTATCA 1541937 30 100.0 38 NNNNNNNNNN .............................. GGCCACCTCTCAAACTCGATCTCTCATATCTATCAAAT 1542005 30 100.0 38 NNNNNNNNNN .............................. TCTATATCCTCAAAACCTATTATTCTAATTACATTCAC 1542073 30 100.0 39 NNNNNNNNNN .............................. CATGAAATTAGCCGATTATCAAAATCTCAAAGGCTCTTT 1542142 30 100.0 37 NNNNNNNNNN .............................. TAATACATCAAATTCAAAGGTTCTATTGCAATATGGC 1542209 30 100.0 39 NNNNNNNNNN .............................. TTGAAAAGTATGCAATCCAGCCTGTTATGGCCCTGAGTT 1542278 30 100.0 37 NNNNNNNNNN .............................. TCGAAAAATACTAAAAAAGGCAAGGGAGATTGAGGAT 1542345 30 100.0 38 NNNNNNNNNN .............................. CAGGTTTTTCACGGAGGTAAACAAAGGCGAGAGGACTG 1542413 30 100.0 37 NNNNNNNNNN .............................. AAAATTTATTTGATAGCTACCTCCATGAAGCTGAATA 1542480 30 100.0 37 NNNNNNNNNN .............................. TATAGGTATTGAAATTTTTAAAACTGGATTGCATTAA 1542547 30 100.0 38 NNNNNNNNNN .............................. ATGAATTTAATAACTGAAATAGCCATAACTGTATTCTC 1542615 30 100.0 36 NNNNNNNNNN .............................. CCTGTCTCCTGCCTGCCATACTGTTCCTATGAACTT 1542681 30 100.0 38 NNNNNNNNNN .............................. TTCAATGTCTGACGCATTGTATCTGTTTTCTAATAGCT 1542749 30 100.0 38 NNNNNNNNNN .............................. TGCGGAAATCCATTTTTTTGAAATTCCAGAGTATCGAT 1542817 30 100.0 35 NNNNNNNNNN .............................. GAATACAGATTTAGACCAGCGTCATCAAGAATTAG 1542882 30 100.0 38 NNNNNNNNNN .............................. TCATTCTCTCATTCTCAAAATCTCAAAGTCATAGTCGA 1542950 30 100.0 37 NNNNNNNNNN .............................. TTGAAATCAAAGGATATGGAGTTAGGCTTATCGTTAT 1543017 30 100.0 39 NNNNNNNNNN .............................. TTCATCTTTGCATGACGCTTTGGAAAATTCGGCTCAATT 1543086 30 100.0 36 NNNNNNNNNN .............................. TGGATCAAAGCTTGCCTTCAACGTAATATCTTTGTT 1543152 30 100.0 38 NNNNNNNNNN .............................. CCGATCCTGAATTTCTCTCAAAACAGATATTATTCGAT 1543220 30 100.0 36 NNNNNNNNNN .............................. ATATATGATCAATATGATTGTATTCGGAAAATTTAA 1543286 30 100.0 36 NNNNNNNNNN .............................. AAAGCTATTGACCTCGTACATCATCTCTCCGCCTGA 1543352 30 100.0 39 NNNNNNNNNN .............................. AAGGAAATAACGGATAACGGCGATAAAATATTAAAAATT 1543421 30 100.0 36 NNNNNNNNNN .............................. GAATATAGAAATGAAAAAAAACTGTATGCAAGTAAA 1543487 30 100.0 37 NNNNNNNNNN .............................. AAAATCCTATGCCTCTTTGAGAATTATGCAGGACATT 1543554 30 100.0 39 NNNNNNNNNN .............................. TGATAGAATACATCTCTATGAGTTCATATAACTCATTCA 1543623 30 100.0 38 NNNNNNNNNN .............................. CCGCCTTTGTTTTCATCGTTAACACCAGTTGTATCGAA 1543691 30 100.0 39 NNNNNNNNNN .............................. TGATAGAATACATCTCTATGAGTTCATATAACTCATTCA 1543760 30 100.0 38 NNNNNNNNNN .............................. CCGCCTTTGTTTTCATCGTTAACACCAGTTGTATCGAA 1543828 30 100.0 36 NNNNNNNNNN .............................. CTCTTCCTGCATTTATATCACCTCGTTGGCAATCGA 1543894 30 100.0 37 NNNNNNNNNN .............................. TATCGATAGTTTTTTGATTAAAATCGGCAATCACTTA 1543961 30 100.0 36 NNNNNNNNNN .............................. TGAATTCTGAATTTTTGAGCCTGATTTTGTTTTTTG 1544027 30 100.0 36 NNNNNNNNNN .............................. AAAATTGCTATCGATGATCCAATGCTCAATTTTCTA 1544093 30 100.0 37 NNNNNNNNNN .............................. CATGAAAAGAAAAACAAATTTGCGAATTCCATCAAAT 1544160 30 100.0 38 NNNNNNNNNN .............................. TAATCTTATGAATAATGCATTCCTATGGTTATTCTCAA 1544228 30 100.0 39 NNNNNNNNNN .............................. CATTGTCCCAACTATCCTTATAAATTCCGGAGCCGCATA 1544297 30 100.0 38 NNNNNNNNNN .............................. TATTGAATTTGATCATTCTAATCAAACAGTCTTATCAA 1544365 30 100.0 35 NNNNNNNNNN .............................. AAATCCAAACAAAGCATACCATGAATATCCATTAT 1544430 30 100.0 38 NNNNNNNNNN .............................. TTAAAAATTGCTGGTTATATTAAAAAAAAGAAATAACT 1544498 30 100.0 41 NNNNNNNNNN .............................. CAGATTCCGTGCCGACAGTAGGAAAATGGATCATTTTGAAT 1544569 30 100.0 38 NNNNNNNNNN .............................. CGATCTGATGATATAGTGTGGCATTGGAATTTTTGATA 1544637 30 100.0 36 NNNNNNNNNN .............................. TTATATATCGAATTCAACTAATCATTTTTATGAAAA 1544703 30 100.0 36 NNNNNNNNNN .............................. TGATCCAATTTTATAATCCTGCCTGCCAACAAATTT 1544769 30 100.0 36 NNNNNNNNNN .............................. CATATTCCTTTGAATTGCAAAATCGCTGGTTTTCCA 1544835 30 100.0 36 NNNNNNNNNN .............................. CAATCGTATTATCTTTATCTAAATTCGTCAGTAATC 1544901 30 100.0 36 NNNNNNNNNN .............................. TATCAAAAAATTATTTGAAAATTTATCATTTGAAAA 1544967 30 100.0 37 NNNNNNNNNN .............................. ATGGCCTATTTCAGGTGCCAGGGCGAGGAATATAAGA 1545034 30 100.0 38 NNNNNNNNNN .............................. TCATATGAACTGGCAGACGGCACAGCACCATCAAAAAT 1545102 30 100.0 36 NNNNNNNNNN .............................. AGACTTTTTTAATTCAAAATTAAATTTTACATATGT 1545168 30 100.0 40 NNNNNNNNNN .............................. TGGGCGGCTGGGTTCAATCATTTCCAAAGGAATGGGACAT 1545238 30 100.0 37 NNNNNNNNNN .............................. AAACGGCGTTGTTAGACTGTCTCTATTTCCTGATTAT 1545305 30 100.0 38 NNNNNNNNNN .............................. TGCAACCCTGTTAAATGGGATTGTTACTCCCAATATTT 1545373 30 100.0 36 NNNNNNNNNN .............................. ATGAAAAGAAAAACAAATTTGCGAATTCCATCAAAT 1545439 30 100.0 37 NNNNNNNNNN .............................. GAGAATACAGATTTAGACCAGCGTCATCAAGAATTAG 1545506 30 100.0 37 NNNNNNNNNN .............................. AGCCGACTTTATTTTTTCAATATTCCAGTTTTTGTAG 1545573 30 100.0 39 NNNNNNNNNN .............................. TAAAAAGACTGAAAATGATAATTTTCAATTTTCATTGAG 1545642 30 100.0 38 NNNNNNNNNN .............................. TAAAATAAAGCTAATTGAATGACAAAAAACGATAATGG 1545710 30 100.0 37 NNNNNNNNNN .............................. AGATGGATCTTTCCCCCAATGACCTAAACGGCGTTGT 1545777 30 100.0 37 NNNNNNNNNN .............................. TATAATCCTGCTTCCCTACATATCTAACAGAACCTCT 1545844 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 83 30 37 CTTTCAATCCTATTTAGGTTATTATTTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.30,-1.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [88.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [251,24] Score: 0.18/0.18 # # Final direction: R [0.45,5.28 Confidence: HIGH] >NC_006155 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1891010 28 100.0 32 TTATCTTACT ............................ AAGTAAGGCACAGAAGGTTGTCACAATGACAA 1891070 28 100.0 32 ACAATGACAA ............................ ACAATATTTTTTCCACTAATTATCATATTAGA 1891130 28 100.0 32 TCATATTAGA ............................ CTGGGCCTCGCTGCTAAAATGATCGTGCTCTT 1891190 28 100.0 TCGTGCTCTT ............................ TCAGGCTGGCGGCGAAATCACCACCTTTGCAT ========== ====== ====== ====== ========== ============================ 4 28 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [497,96] Score: 0.18/0.18 # # Final direction: F [1.69,0 Confidence: HIGH] >NC_005877 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 51349 28 92.9 38 GGAAAAACAC --.......................... AAAAAAGTGAAAATATCCGGGATATACAAATTATATTC 51415 28 100.0 43 AATTATATTC ............................ GAGTAAACTACAGTAGCAGGCAAAATAAATTTTTGAGGAACAG 51486 28 100.0 38 TGAGGAACAG ............................ TCTTAAAAATAGACGTCGTTTCTGACCCTTTCTTTAAG 51552 28 100.0 38 TTTCTTTAAG ............................ TTGACGTTGTTGCGTGGGATGATGAGTGATATCCTCCT 51618 28 100.0 45 ATATCCTCCT ............................ AGAGAAGACAGCCTCAAAAAAGCCAAAGAAATACCTCAAAAAGAA 51691 28 100.0 40 TCAAAAAGAA ............................ ACTAAAAATTGGAATATCGAAAAGATTAGCTCCATCTTAA 51759 28 100.0 42 TCCATCTTAA ............................ GATGATCTGCGTCATCCACTCCGGGAAGTGCATGTGGAAAAG 51829 28 100.0 44 TGTGGAAAAG ............................ TTAAAGCCTGGTTCTAGGACTACAAAGGATTGCTTAGCGCTCCC 51901 28 100.0 39 TAGCGCTCCC ............................ CATAAATCTATTCTATTATTATATTGAGGTGGTAAAATG 51968 28 100.0 TGGTAAAATG ............................ CAATAATGAA ========== ====== ====== ====== ========== ============================ 10 28 40 CTTCCATACTATCTAGTAATTCTTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:71.43%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.80,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [70.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [286,541] Score: 0/0.18 # # Final direction: R [0,0.68 Confidence: HIGH] >NC_005877 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 61415 28 100.0 43 AACTAAAAGA ............................ TGAGCTTGATAGGGTTCTAAAGGATTTTAGAATAAAGCTTCTT 61486 28 100.0 45 AAAGCTTCTT ............................ CTGATATTCGCCATAATAGTTCTCGTTGCCGCCGTTATCTTTATC 61559 28 100.0 48 TATCTTTATC ............................ CCACATGCAAATCTATGTTGCCGTCAAAAATTACATTGAGAGCAAAAA 61635 28 100.0 39 AGAGCAAAAA ............................ ATCAAATCAGGGCACAAACACCTGATGGACGGTGTCCAC 61702 28 96.4 38 CGGTGTCCAC ...............T............ CTTTAAGAGCCTGGTCAATTCTCCTATTTCCGGTGATT 61768 28 100.0 41 TCCGGTGATT ............................ TGACAATAAAGGAGGTTGATTAAAATGATATATAAAAATTG 61837 28 100.0 42 ATAAAAATTG ............................ ATACAATGCAATTTTTTATTCGGTCATGATTTTTTCATTATC 61907 28 100.0 48 TTTCATTATC ............................ CCACATGCAAATCTATGTTGCCGTCAAAAATTACATTGAGAGCAAAAA 61983 28 100.0 41 AGAGCAAAAA ............................ ACATTATGTAAAAATGTCTGAGACAGATCAGAGAAGATCAT 62052 28 100.0 41 AGAAGATCAT ............................ AGGGCGAGGTTGTATTAAGAGGTACGCTTTACACGGAGTTA 62121 28 100.0 39 CACGGAGTTA ............................ CATCAAACAGTTTGGAAACGAAAATAAGATAATGTATGA 62188 28 100.0 41 TAATGTATGA ............................ ATAAAGTCTCGAATATTGAGGTCAAGCCTAATGCTTCCACG 62257 28 100.0 38 TGCTTCCACG ............................ CGTAGAATCAAAAGAAGACGGCAATGGCGGTTATGTAG 62323 28 100.0 39 GGTTATGTAG ............................ TAGGCGACATCGTAATAGACATAACGGGAATAACGATGG 62390 28 100.0 39 ATAACGATGG ............................ AATGATCGGGGCGAGCTGTACAGAGCGTATAATGAATGG 62457 28 100.0 45 TAATGAATGG ............................ TTAGATAAATATAAATATCCATGTCCCGTGTGTGGTAGCCTAAAA 62530 28 100.0 TAGCCTAAAA ............................ CCGTTACTAA ========== ====== ====== ====== ========== ============================ 17 28 41 CTTCCATACTATCTAGTAATTCTTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:71.43%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.80,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [309,213] Score: 0/0.18 # # Final direction: R [0,0.41 Confidence: MEDIUM] >NC_005877 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 52031 28 100.0 47 TAGCTAAAAT ............................ TAAAAGCTATTGATCTGCTGGCTAACAACGATATATATCGAGTAGAA 52106 28 100.0 38 TCGAGTAGAA ............................ CTTGGAAAAAAATTTATGAATTATATATTTCTACATCA 52172 28 100.0 40 TTCTACATCA ............................ TATAATATTGGTGATAAAAATGGATAAGGATATGTATGTA 52240 28 100.0 42 TATGTATGTA ............................ CCGGGCAGTGCTATAGTGAAGTTAGTACACAGAGGAAAGACA 52310 28 100.0 AGGAAAGACA ............................ CGTTACTAAAA ========== ====== ====== ====== ========== ============================ 5 28 41 CTTCCATACTATCTAGTAATTCTTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:71.43%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.80,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [80.0-76.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [968,199] Score: 0.18/0.18 # # Final direction: F [0.18,0 Confidence: MEDIUM] >NC_005966 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2339398 28 100.0 32 AGAAGCAAGA ............................ CAGAAACGGCGGGTACACGTGTCACGGTGAAT 2339458 28 100.0 32 CACGGTGAAT ............................ ATCGCTATTCTGACCCAGAAATTAACAATCAC 2339518 28 100.0 32 TAACAATCAC ............................ TCATGATACGTGCAGTACCATCTGCTGGATTA 2339578 28 96.4 32 TGCTGGATTA ....................T....... ACTTAATGCGGAACCGACATCTGTACTAGTGA 2339638 28 100.0 32 GTACTAGTGA ............................ TATTGAGCAAGCGATTGACGGTTATGCGCGTT 2339698 28 100.0 TATGCGCGTT ............................ AGTAAATATTG ========== ====== ====== ====== ========== ============================ 6 28 32 TTTCTAAGCTGCCTGTGCGGCAGTTAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [113,241] Score: 0.18/0.18 # # Final direction: R [0.41,1.19 Confidence: MEDIUM] >NC_005966 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2371799 28 100.0 32 CTTTCTTACT ............................ TCACACTGCACTTGCGATTGGGGCACTATCAA 2371859 28 100.0 32 GCACTATCAA ............................ AATGTCGTGAACACTCAGACAGGCGGATACCA 2371919 28 100.0 33 GCGGATACCA ............................ CGACAGAGCAAGACATCACTGATATGTCGAATT 2371980 28 100.0 32 ATGTCGAATT ............................ GCAGTCGGACAACTTCAATCGAACGCATCATC 2372040 28 100.0 32 ACGCATCATC ............................ CTGCTTCTCGGTCATCCTTAAATCTGAATGAG 2372100 28 100.0 32 TCTGAATGAG ............................ TCACACTGCACTTGCGATTGGGGCACTATCAA 2372160 28 100.0 32 GCACTATCAA ............................ AATGTCGTGAACACTCAGACAGGCGGATACCA 2372220 28 100.0 33 GCGGATACCA ............................ CGACAGAGCAAGACATCACTGATATGTCGAATT 2372281 28 100.0 32 ATGTCGAATT ............................ GCAGTCGGACAACTTCAATCGAACGCATCATC 2372341 28 100.0 32 ACGCATCATC ............................ CTGCTTCTCGGTCATCCTTAAATCTGAATGAG 2372401 28 100.0 32 TCTGAATGAG ............................ TTCCACCAATCAAGAGTGGATTGGTCAATAGT 2372461 28 100.0 32 GGTCAATAGT ............................ AGTCGACCGCGAGACGGGAAAAAGTACGAACA 2372521 28 100.0 32 AGTACGAACA ............................ CGTAGACTGCCACCACCGCACCCCCATACATT 2372581 28 100.0 32 CCCATACATT ............................ TCGCGCAATCCATCGCGAGGGGCCTATTCGAG 2372641 28 100.0 32 CCTATTCGAG ............................ AATGAGAAAATCAAACCACCCATGATGATCGT 2372701 28 100.0 28 TGATGATCGT ............................ TACTCGAACTTGTCTGTCATATTGCCCT 2372757 28 89.3 32 ATATTGCCCT TAC......................... TGAATACTCAAATGACAATAAACAGGATAAAG 2372817 28 100.0 32 CAGGATAAAG ............................ TGTGAACAAATCCGTTGTAAGCCGCGCCTTAT 2372877 28 100.0 32 CGCGCCTTAT ............................ ATTTAAAAGCCACTCATCTGACACACCTAAAA 2372937 28 100.0 33 ACACCTAAAA ............................ TTATCGAAGTATTCTGCTTTGGGTGCGGCAATG 2372998 28 100.0 TGCGGCAATG ............................ ACCAGAAATGATTCCAGATATTCCAGATGAATCC ========== ====== ====== ====== ========== ============================ 21 28 31 CTTCACTACCGCACAGGTAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.60,-6.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [80.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [233,185] Score: 0/0.18 # # Final direction: F [1.05,0 Confidence: HIGH] >NC_005966 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2448115 28 100.0 32 NNNNNNNNNN ............................ GACACCAAAGGTAATAAAGCTATGAAAGAATA 2448175 28 100.0 32 NNNNNNNNNN ............................ TTTACTCTTATTATACTATTACCCCTAACCCC 2448235 28 100.0 32 NNNNNNNNNN ............................ TCCAGCTAAAATCGTTTGAGGGTGAAACTCCT 2448295 28 100.0 32 NNNNNNNNNN ............................ ATGATTTCGAAAGGCTCTCCGAGTACGTTATT 2448355 28 100.0 32 NNNNNNNNNN ............................ ATTCCCAGCATTCACGCTGAGTGCTTCGGCAC 2448415 28 100.0 32 NNNNNNNNNN ............................ TGTGCAGCCGTTTGGCGCGCCCCAGATATGCG 2448475 28 100.0 32 NNNNNNNNNN ............................ AGGAACCGTGGCAGATTGCGTTAATATGTTAG 2448535 28 100.0 32 NNNNNNNNNN ............................ TAACGATGGAATAACGTTCAAAGAATCTAACG 2448595 28 100.0 32 NNNNNNNNNN ............................ AATTCATGAAAGATCATTCGCTGTGTTTGGGG 2448655 28 100.0 32 NNNNNNNNNN ............................ ATTTGCCGCTTTGAATATTTGATGCACCTGCT 2448715 28 100.0 32 NNNNNNNNNN ............................ AAATCGATGAGGGACAACATCAGGCACTCGAC 2448775 28 100.0 32 NNNNNNNNNN ............................ ACAGGGCAGGGAAATAACCAAAAATCGATATA 2448835 28 100.0 32 NNNNNNNNNN ............................ GACATAGGAACGATATGAAGATGATTTTTTTT 2448895 28 100.0 32 NNNNNNNNNN ............................ ATCAAGCTATCGTCATTTGGCCGATACACAGC 2448955 28 100.0 32 NNNNNNNNNN ............................ TCTGCCATGCATACAATTTGATTTGGCTGCGT 2449015 28 100.0 32 NNNNNNNNNN ............................ AATCATCAATATCTTTTTGCGCTTTGCGTGAA 2449075 28 100.0 32 NNNNNNNNNN ............................ TCTCACGTACAAAAAAAAATCCTATTTGATGT 2449135 28 100.0 32 NNNNNNNNNN ............................ GCGATTGAATACCGATAGATCGGGGATATTAA 2449195 28 100.0 33 NNNNNNNNNN ............................ ATACACTACATTGAACTGCTCGGACTTAAGCAT 2449256 28 100.0 32 NNNNNNNNNN ............................ AAAAAAAGTGTAGCCAACTTCATACAGTTACC 2449316 28 100.0 32 NNNNNNNNNN ............................ CAGGTGGCAGCGTTCCATTTTCGGGGGCAAAT 2449376 28 100.0 32 NNNNNNNNNN ............................ AAAACCACATTATAAGGCTCGGTAAATGTGTA 2449436 28 100.0 32 NNNNNNNNNN ............................ ATGAAAATAAGCCCCAATATTGTCAGTGTTCC 2449496 28 100.0 32 NNNNNNNNNN ............................ GTTTCCGCGTCATTCGGGTACAGTTGCGACAT 2449556 28 100.0 32 NNNNNNNNNN ............................ TTGAAACCTATGAACTTTGTGTTATACGTGTC 2449616 28 100.0 32 NNNNNNNNNN ............................ CTTATCAAAATCGGTGGGATCTTTGTCGTACT 2449676 28 100.0 32 NNNNNNNNNN ............................ GAATTATGCTTTAAAAAATCCTTTCGCGGGTA 2449736 28 100.0 32 NNNNNNNNNN ............................ AATCCGATTTCTGCTGTTGCTGGGGTTAGAGC 2449796 28 100.0 32 NNNNNNNNNN ............................ ATGTACTATAAGTCACATGGTAAAGACACGAA 2449856 28 100.0 32 NNNNNNNNNN ............................ GAAACGTTGAATCCAGAACCAGCAATCCCAGC 2449916 28 100.0 32 NNNNNNNNNN ............................ AAACTGTGGAGCATTACATCTACCATACTGCC 2449976 28 100.0 32 NNNNNNNNNN ............................ TAAAACAGTCAATGTTAATTGGGGTGAACAAT 2450036 28 100.0 32 NNNNNNNNNN ............................ GCGGTAGCTGGCGCGGTGTTTGCGTTTTTTGG 2450096 28 100.0 32 NNNNNNNNNN ............................ TATAACTAGCATGTCAGAAATAAAACTATCCG 2450156 28 100.0 32 NNNNNNNNNN ............................ CGTTGGTACTGTTGCAGGTGGTGCATTGGGGA 2450216 28 100.0 32 NNNNNNNNNN ............................ GACTCCGCTACTTAAGAAAGAGAGCATAGGTG 2450276 28 100.0 32 NNNNNNNNNN ............................ TAGAAGTAACTTACGATAACATCTTTGGCGCC 2450336 28 100.0 32 NNNNNNNNNN ............................ TCAAGCATGTGATCACTAATGATTCGGTTTTT 2450396 28 100.0 32 NNNNNNNNNN ............................ TATACTCCTTATATGTAATTTACGCGTAAACC 2450456 28 100.0 32 NNNNNNNNNN ............................ CACTACATTTATACCCGCCGTTTACGCTCTTA 2450516 28 100.0 32 NNNNNNNNNN ............................ GTTTAATGTGGCGTTCAGGTCTTGTTCGCCAA 2450576 28 100.0 32 NNNNNNNNNN ............................ ACTCAGTTGACCAATCTTACTGCTTCACTTAA 2450636 28 100.0 32 NNNNNNNNNN ............................ AGAAGATTTGGTGGGCAAAAATATGGAATATA 2450696 28 100.0 32 NNNNNNNNNN ............................ ATTCTTAGCTGCATCACGCAAGATTTGCTTTT 2450756 28 100.0 32 NNNNNNNNNN ............................ CTCATCGAAACATACATTGAGAAAAATCATTT 2450816 28 100.0 32 NNNNNNNNNN ............................ AATCATCATCGACCGCAGTATTGAAGCGAAGC 2450876 28 100.0 32 NNNNNNNNNN ............................ AGCCCTTCGTATATTTGAATAGTGCATTGGCT 2450936 28 100.0 31 NNNNNNNNNN ............................ AAAAATACCCGCGCCCAAGTGATCCTGAAGA 2450995 28 100.0 32 NNNNNNNNNN ............................ AACCATATAGAATTGTTAACTTTTGTAAATAA 2451055 28 100.0 32 NNNNNNNNNN ............................ GATCAAAACAACAAGCGTACCAATGATGCCGA 2451115 28 100.0 32 NNNNNNNNNN ............................ ACAAGGGATGTATTGACCAGGTGTGAGCGCAA 2451175 28 100.0 32 NNNNNNNNNN ............................ ATTCTTGAGCCGCCTGCAGATTTGTTATGTCA 2451235 28 100.0 32 NNNNNNNNNN ............................ ATGGTTCGGGGTTGTAGCTGTACGCCCCAGAT 2451295 28 100.0 32 NNNNNNNNNN ............................ AAGAGCAAAAGGTAACTTGGATCTACCGCCAC 2451355 28 100.0 32 NNNNNNNNNN ............................ CACGGAAATTGGAATGATGATTTCGACGGTAA 2451415 28 100.0 32 NNNNNNNNNN ............................ TTGTTGAGCAGCAGAACGGCCTTTTACCAACC 2451475 28 100.0 32 NNNNNNNNNN ............................ AGATACCTCAGTCCAAGCTGCTGAATTTTATC 2451535 28 100.0 32 NNNNNNNNNN ............................ AAGAGACAACAGGGCTTATTAAAGTAACTTGT 2451595 28 100.0 32 NNNNNNNNNN ............................ AAGTTTTATTTAAGCCCAAAGCTAAAGATAGT 2451655 28 100.0 32 NNNNNNNNNN ............................ GTTAGCTGCACAAGCTCTGGGACTTTAATAAA 2451715 28 100.0 32 NNNNNNNNNN ............................ AATCGCTAACCAGTAGAACCCGCGTAGCAGCG 2451775 28 100.0 32 NNNNNNNNNN ............................ AAGCGTTGCGAGCGCTCAAAAAGTGGCTGATC 2451835 28 100.0 32 NNNNNNNNNN ............................ GTCTACCAAAGCGAAAGTATCATTTTCAATGA 2451895 28 100.0 32 NNNNNNNNNN ............................ TGTATCGGAGCTACGTCAGAAGGTCAAGCACA 2451955 28 100.0 32 NNNNNNNNNN ............................ AGGTCGATTTATCATAAACATCGGGCACGATA 2452015 28 100.0 32 NNNNNNNNNN ............................ GCCAGAAATTTTGACACTTGCGTTTAGCAATA 2452075 28 100.0 32 NNNNNNNNNN ............................ AGATTGTCTCTAAATTTAACGCGTGGCTTTGT 2452135 28 100.0 32 NNNNNNNNNN ............................ AAAGCCGAGCCCAACTTTTGACGCACAAAAAG 2452195 28 100.0 32 NNNNNNNNNN ............................ GTCAGTGATTGCTTTCATTGCCGTAGCTACGT 2452255 28 100.0 32 NNNNNNNNNN ............................ ATCCGCGCCCAATTTGTCCCACCAATCTTTTT 2452315 28 100.0 32 NNNNNNNNNN ............................ GATTCCATAGAACGTACCATTGACGCGCAACA 2452375 28 100.0 32 NNNNNNNNNN ............................ TGGATCTCTGCAGAAATCACATTGTCCAAATA 2452435 28 100.0 32 NNNNNNNNNN ............................ AACAGGCGTTACTGAGCTATGTGTCGTTAAAA 2452495 28 100.0 32 NNNNNNNNNN ............................ AAGCATGCCTTGATGCATACAACAAAATTGCC 2452555 28 100.0 32 NNNNNNNNNN ............................ TGCGAGTTCAAACTTCTTTAAAGATGCAACAT 2452615 28 100.0 32 NNNNNNNNNN ............................ CGTGGAATCATAATCATAAGCTTCACCGACAC 2452675 28 100.0 32 NNNNNNNNNN ............................ GATCAGTGGCGCGTCTACAGTGAGCGAGTGGG 2452735 28 100.0 32 NNNNNNNNNN ............................ ATAATTGCAACAACAGCATAATATACATACCA 2452795 28 100.0 32 NNNNNNNNNN ............................ CTTACTTTCGCTTGCGCTTCGTTACGAATGCC 2452855 28 100.0 32 NNNNNNNNNN ............................ TCAACCAGGATCGGATAACCATCAATTCTAAA 2452915 28 100.0 32 NNNNNNNNNN ............................ AACAGGCGTTACTGAGCTATGTGTCGTTAAAA 2452975 28 100.0 32 NNNNNNNNNN ............................ AAGCATGCCTTGATGCATACAACAAAATTGCC 2453035 28 100.0 32 NNNNNNNNNN ............................ CAAATGTAATCAGGATTAGTCGATTGCAGCGT 2453095 28 100.0 32 NNNNNNNNNN ............................ AGATCGCCTGTGCGTAGGTCAACTGCACCATT 2453155 28 100.0 32 NNNNNNNNNN ............................ AGCTGAACACGCCGTTTTTTAACTTCCGCCAT 2453215 28 100.0 32 NNNNNNNNNN ............................ ATGCACCTGATCCTGCCCAATGAGGGATTTAC 2453275 28 100.0 32 NNNNNNNNNN A........................... TGATGGTGCAGGAACCACAGCAACATCAGTCA 2453335 28 100.0 32 NNNNNNNNNN ............................ GATTGAAATACTATTAAGGCTGTTCGTAAAGC 2453395 28 100.0 32 NNNNNNNNNN ............................ ACACACGCTGCCAATTCTTCGTTAGAGTGTAT 2453455 28 100.0 32 NNNNNNNNNN ............................ AGCAGTAAAAGCCATGACCGTTAAGATCGCTC 2453515 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 91 28 32 GTTCGTCATCGCATAGATGATTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.29%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [99,81] Score: 0/0.18 # # Final direction: F [0.78,0 Confidence: HIGH] >NC_006138 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 198143 36 97.2 34 TACCAAGATC ........C........................... TCGCTCAGGGTTGCTCATATGCTCCTGCAGGGTC 198213 36 100.0 35 CTGCAGGGTC .................................... ATTTTTTCAGGTCGATATAGCGCATATCTTTGGCG 198284 36 86.1 38 ATCTTTGGCG ..........A.........G............--- CACGCAGACCTGCAGGCCGACCGTTATAACAGTCCTTG 198358 36 94.4 35 ACAGTCCTTG ........C.............A............. CGTTTGCCACAGGAAAGAGCATCGGCGGTTGATCG 198429 36 100.0 35 CGGTTGATCG .................................... TTCCCGAGATCGGTCAGGTCATAGACGCCAAACTG 198500 36 100.0 34 CGCCAAACTG .................................... GTCGACAAGGTAGGAGCCGGGCCGAGAGTAGGGG 198570 36 100.0 35 AGAGTAGGGG .................................... TCGTCGTCCCAATCCATTCCGCTTGCAACAAACTG 198641 36 100.0 34 CAACAAACTG .................................... GTACAGACAGGCTTATCATCAGAGTAATAGGTGG 198711 36 100.0 35 TAATAGGTGG .................................... ATGGGCCGAATGGCAACTCTACGAGTTCTATCCTG 198782 36 100.0 35 TTCTATCCTG .................................... TGTCTATCGCCTTGATAGCGGTAGATCCCTTGATG 198853 36 100.0 36 TCCCTTGATG .................................... CCGATGATCGGGCAATACGTCACTTGTATCGGGTCG 198925 36 100.0 36 TATCGGGTCG .................................... AACCTCGGTCGATGTTTGTGGGGCTGTGTTGATTTG 198997 36 100.0 35 TGTTGATTTG .................................... CAGCTCAAACTGATTTTGAGGACAGTGATAAACAG 199068 36 100.0 TGATAAACAG .................................... TGCCAGTTAA ========== ====== ====== ====== ========== ==================================== 14 36 35 CTTCAATGTAGTCACCCCTTTCGAGGTGATTGATAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.60,-10.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [67,148] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_006155 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2964428 28 100.0 32 NNNNNNNNNN ...GATTAT................... CCCAGCGTCGGGTCGGATACTTGCCACGTAAC 2964488 28 100.0 32 NNNNNNNNNN ............................ TAGAGTGTTTTTTCTGACGATGTTCCTTGCTG 2964548 28 100.0 32 NNNNNNNNNN ............................ CCAGAGCCTCCTGATACATCTGATCCCACAGT 2964608 28 100.0 32 NNNNNNNNNN ............................ CATCACAATGCTCTGGATGACGCAATTCATCA 2964668 28 100.0 33 NNNNNNNNNN ............................ TGATTTTGATTATCCTATGCCAGCCGAATATAG 2964729 28 100.0 32 NNNNNNNNNN ............................ TAAAGACCGTTGAATTTAAACAAGGTATCAAC 2964789 28 100.0 32 NNNNNNNNNN ............................ TGAAAGGGATCGGGCTGAATGCGCAAGACGCG 2964849 28 100.0 33 NNNNNNNNNN ............................ AGTCAGGGCTATGAGGGGGCTGCAATGGGCGCG 2964910 28 100.0 32 NNNNNNNNNN ............................ GTTTTTTCGACCTTTTCCTCCATCAGCGAGGC 2964970 28 100.0 32 NNNNNNNNNN ...........................T ACCGTTATTAATGGGTGGCGCTGGCGCTTCAT 2965030 28 100.0 32 NNNNNNNNNN ............................ ACGTGGCTAGTTATTACGATACAATTAATCTC 2965090 28 100.0 32 NNNNNNNNNN ............................ GCTGCTTTCTTGTCAATCCCTGACGGGTTCTT 2965150 28 100.0 32 NNNNNNNNNN ............................ ATCTCCGGAGAGTTCAACTGTGGGGTGGTGTA 2965210 28 100.0 32 NNNNNNNNNN ............................ TTAAGCATCACACAGCCGATGGTGTGGTTGAT 2965270 28 100.0 33 NNNNNNNNNN ............................ CCGGATAGCGAAACTTAATGAAAATATTATCGC 2965331 28 100.0 32 NNNNNNNNNN ............................ ACCAGTTGTACATGTGTCAGTTTGTCGACTCT 2965391 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 17 28 32 TTTCTAAGCTGCCTGTGCGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [355,339] Score: 0/0.18 # # Final direction: R [0,1.42 Confidence: HIGH] >NC_006177 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================== ====== 2339383 18 94.4 56 CCGCTTCACC .............T.... ATAGCCCGAGCCGAACTCCAGATTCTGCGCGTGGACGAGGCTCCGGAGCCCGCTTG 2339457 18 100.0 57 AGCCCGCTTG .................. GCACTCGCGAACGAACCGCAGGTTTTGCGCGCAGCCGTCCTCTCCAGCCGCCTCACC 2339532 18 94.4 56 CCGCCTCACC .............T.... ATAGCCCGAGCGGAACTCCAGATTCTGCGCGTGGACGAGGTTCCGGAGCCCGCTTG 2339606 18 100.0 AGCCCGCTTG .................. GCGCTCGGGAA ========== ====== ====== ====== ========== ================== 4 18 56 CGCGCAGAACCTGAAGTG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [33.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [932,267] Score: 0.18/0.18 # # Final direction: F [0.82,0.41 Confidence: MEDIUM] >NC_006177 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 355482 37 100.0 35 NNNNNNNNNN ..................................... AGGTCGGCGCTGTACTCGGCGTCAGTCTTCTGCCG 355554 37 100.0 36 NNNNNNNNNN ..................................... GATGATGTTGCCGGCCAGGATGCGAATTTCGGCCAG 355627 37 100.0 40 NNNNNNNNNN ..................................... CTGCAGGGGGATGATGTTTGCGCCCTCCACCGGGCCGGGT 355704 37 100.0 35 NNNNNNNNNN ..................................... ACCACAGTGGCCGCCCGGTTGATGGTAACGGTCCG 355776 37 100.0 35 NNNNNNNNNN ..................................... CCCCAGGAGGAAAACCGGTTGCTCCGCCAGCTCAT 355848 37 100.0 37 NNNNNNNNNN ..................................... TTCTCGACCATGGCGATCTCTTTGGCGCAGTTGACGG 355922 37 100.0 35 NNNNNNNNNN ..................................... ATCGATATGAAGTGGATAGAAGAGGAAGAAGGTGA 355994 37 100.0 37 NNNNNNNNNN ..................................... GTGTTCGAGGAGAACGGAACCCCGGTTGATGTTGCGG 356068 37 100.0 34 NNNNNNNNNN ..................................... GTCATCCAGAGCGCCACCAGGGCGGCGCCCACGG 356139 37 100.0 38 NNNNNNNNNN ..................................... ATCGCTCATTCCTCCAGATGCGCAAGACCTTGCGCTGG 356214 37 100.0 35 NNNNNNNNNN ..................................... ATGACCCTGCAGCCTATCTGGGCGGCGATGCAGGG 356286 37 100.0 34 NNNNNNNNNN ..................................... GAGCGGATGGCCGCCGGTCTGAAAAACGCCCACC 356357 37 100.0 37 NNNNNNNNNN ..................................... ATGATGACCATCTCGATGCAGGAGATCGAGCGGGAGC 356431 37 100.0 35 NNNNNNNNNN ..................................... GTGGCCGAGGCCGAGAGGGTGAAGCACTACGCCGG 356503 37 100.0 35 NNNNNNNNNN ..................................... ATGGTGGAGTCGAGGATGAACCAGCGGCCATCGTG 356575 37 100.0 36 NNNNNNNNNN ..................................... CTCCTTCAGTGAGTTGATAGTCCCCTGCACTTAGTC 356648 37 100.0 34 NNNNNNNNNN ..................................... CTCGGCCTCGCATGCGACCTGCTGGGAATCGGAC 356719 37 100.0 37 NNNNNNNNNN ..................................... CTCATCGTCCCACATGACGATTGCCTGCCCTGTCCGC 356793 37 100.0 36 NNNNNNNNNN ..................................... TCCCGGTAGCCGGCGAGGGTCGCCTGCTCGACGATG 356866 37 100.0 36 NNNNNNNNNN .................A................... AGGAATCCGTGGTCCAAGGAGCACTGGAACCTGACG 356939 37 100.0 36 NNNNNNNNNN ..................................... CTTCGTGCAGTACGACCTCCACGTGATGCGTGAGGG 357012 37 100.0 38 NNNNNNNNNN ..................................... TTCGGGGTGCGGTGGGTGCCCCCCACGGAGCGCACAGG 357087 37 100.0 37 NNNNNNNNNN ..................................... CTGGTCGCCACCAAGAAGGCCCCTGGCCGCGAGTAAG 357161 37 100.0 35 NNNNNNNNNN ..................................... GTCTTCCCACTCCACAACGCCGCCGAGGGCCTCGG 357233 37 100.0 33 NNNNNNNNNN ..................................... CTCGGTCGGCCGCGAAAAGTCCTACCCACACGA 357303 37 100.0 35 NNNNNNNNNN ..................................... CTTACGCCGTGGTTGAGGTGGACTAACCAGCCCAG 357375 37 100.0 35 NNNNNNNNNN ..................................... GTGAATGGGGTTGCGCTCGCGCACTTCCTCTTTAG 357447 37 100.0 37 NNNNNNNNNN ..................................... ACCAGCTACCGACAGATGCAGCTCGCCTACAAGGCCT 357521 37 100.0 1 NNNNNNNNNN ...........................CCCGACTTTG NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 29 37 35 GTAGCACCCGGCCGCGAGGCCGGGTGAGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [8,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-18.00,-17.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [33.3-35.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [259,28] Score: 0.18/0.18 # # Final direction: F [5.83,0 Confidence: HIGH] >NC_006177 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 721898 29 100.0 33 TTTCGTTAGT ............................. ACGTCTTCTGACGACACTGAGTCACTCCGTAGC 721960 29 100.0 33 ACTCCGTAGC ............................. TATGAAGTTAGAGGCTCACCTGCGGCCGAAGCC 722022 29 100.0 33 GGCCGAAGCC ............................. GAGCACCCCCAGCAGCGCGTTCCACCCCCCGAA 722084 29 100.0 32 ACCCCCCGAA ............................. CGAGAAGTAGTCCCATCCACTCCGCCGCATCT 722145 29 100.0 33 CGCCGCATCT ............................. TATGAAGTTAGAGGCTCACCTGCGGCCGAAGCC 722207 29 100.0 33 GGCCGAAGCC ............................. GAGCACCCCCAGCAGCGCGTTCCACCCCCCGAA 722269 29 100.0 32 ACCCCCCGAA ............................. CGAGAAGTAGTCCCATCCACTCCGCCGCATCT 722330 29 100.0 32 CGCCGCATCT ............................. GAGGAAGCTTCAGTCTTGGAAACAGGAGTTGC 722391 29 100.0 32 CAGGAGTTGC ............................. TTGCGGGTACAAACGATGGTTCCGCCGTCGAA 722452 29 100.0 33 CGCCGTCGAA ............................. ATTCATCCTATGTCCCAGACTTATAACGAAGAA 722514 29 100.0 32 TAACGAAGAA ............................. GAGTTCAAGATCGTCTCTGCCAACACTGATGT 722575 29 96.6 32 ACACTGATGT ............................A GCTTGTTCTGCGGTTCATGTAGCGGTTGACAC 722636 29 100.0 34 CGGTTGACAC ............................. TCCCGACCGGCCGCAACCGCCGGAGCGTCTGGAC 722699 29 100.0 33 GCGTCTGGAC ............................. CGATGCACGAACCGCGGATGCGGGTGCTCTCCC 722761 29 100.0 32 GTGCTCTCCC ............................. AAGTGGCCTGGGACAATATTAGGCGGGCCGCA 722822 29 100.0 32 GCGGGCCGCA ............................. AGGCGGGCCACCTCCAGGATGGCCTCCACCGG 722883 29 100.0 33 CCTCCACCGG ............................. TAAAGCCGCTTCGGGCGGGCAGGGGGGACATGC 722945 29 100.0 32 GGGGACATGC ............................. ATGTACGGACTGCATGGACGCAAACGGACTGC 723006 29 100.0 32 AACGGACTGC ............................. ACCCAATTCGCTACATTTCCCATTTTGCAGTA 723067 29 100.0 33 TTTTGCAGTA ............................. TAGTCAATGGGCATAGTGCAAACGTCAGTAGTG 723129 29 100.0 32 GTCAGTAGTG ............................. TGGCCTGCCTTGGAATCGGGGAGGAGAGAGAT 723190 29 100.0 32 GGAGAGAGAT ............................. GGCGGATAAAGGGGGGGTTAGTCGCCCAGCGC 723251 29 100.0 32 CGCCCAGCGC ............................. TCCTCGCCCGCGGTCGTCAACTCCTCGGCCCA 723312 29 100.0 32 CCTCGGCCCA ............................. CAGCGGATGAGCAGGCGAAGCCAGCGGGGGAC 723373 29 100.0 33 AGCGGGGGAC ............................. GCGCGGCTTGAGGGCGAGGAAAAGGCCGGTAAA 723435 29 100.0 32 GGCCGGTAAA ............................. AACGGCGAGTTGGCGCTAGCTGCGGTTGCGTA 723496 29 100.0 32 CGGTTGCGTA ............................. CGTGTCGCGAATGCGAAGGCGCGGCTTGAGGG 723557 29 100.0 32 GGCTTGAGGG ............................. TTATCGTTGCGGCGTCTAGCTCCTCCAGCACC 723618 29 100.0 CTCCAGCACC ............................. AAGCCAATTT ========== ====== ====== ====== ========== ============================= 29 29 32 GTCGTCCCCACGCGCGTGGGGGTGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-10.90] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [51.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [536,26] Score: 0.18/0.18 # # Final direction: F [0.45,0.37 Confidence: LOW] >NC_006177 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 725421 29 100.0 32 NNNNNNNNNN ............................. CTGTTCAAGCGTCGTAGTCGCAAACCGAAGGT 725482 29 100.0 33 NNNNNNNNNN ............................. TCCAGGGCCCACCACCAGAGCAGGTGCAGGTGG 725544 29 100.0 32 NNNNNNNNNN ............................. ACGGCCGTTCGCAGGGCGGAGTCCGGTGCCAT 725605 29 100.0 32 NNNNNNNNNN ............................. TCGCCCCTGCAGCTCATCTACCTGCCCCGGGG 725666 29 100.0 32 NNNNNNNNNN ............................. GAGGGGTGATCATGAACGAGGATGAACTGCGT 725727 29 100.0 34 NNNNNNNNNN ............................. CGTTGCTTGCGTCGTCATACCGCTCAACAGTAGC 725790 29 100.0 33 NNNNNNNNNN ............................. TGAGGCTGCGTAGATGGTGCGTGCGGTGCGGAA 725852 29 100.0 32 NNNNNNNNNN ............................. GCACCAGCGGAGGAGCCTCACCGCCCCTCACC 725913 29 100.0 32 NNNNNNNNNN ............................. AGGGGTTCACCGCCCTGGATGTGCTCCGGTCC 725974 29 100.0 32 NNNNNNNNNN ............................. GACGGTGGTCAGCCAACGATGACGGAGTGGGA 726035 29 100.0 33 NNNNNNNNNN ............................. TGCTGAACGCTCGTCGGTTCTGCAACAACCTTC 726097 29 100.0 33 NNNNNNNNNN ............................A GGGTATGGCACCGAACACCCACAAACGGGGTTC 726159 29 100.0 33 NNNNNNNNNN ............................. CTGGACGGTATGCCCTGTCTTTGGCTCGTGAAC 726221 29 100.0 31 NNNNNNNNNN ............................. CGGTCAACAAGGGCAAGGCCTGGGTCCACCC 726281 29 100.0 32 NNNNNNNNNN ............................. GTGGCGTCATCGAAGTTGATCACGTCCGCAGC 726342 29 100.0 32 NNNNNNNNNN ..G.......................... GAGTGCGAGAGACCATGACGCGACTTCTTTGC 726403 29 100.0 32 NNNNNNNNNN ............................. CGCCAGGAACATGCCCCGGAGCGTCAGCCGGT 726464 29 100.0 32 NNNNNNNNNN ............................. GTGTACTGCATCTACGTGGACGGCAATCTTCG 726525 29 100.0 34 NNNNNNNNNN ............................. CACATCATCGGCCTCCTGGGCCACCCTGGACAGC 726588 29 100.0 32 NNNNNNNNNN ............................. AACTCGCTCAGACAGTCGGTGCTGCACCAGTT 726649 29 100.0 33 NNNNNNNNNN ............................. GACATTCTGGCACCGGGCGGTGTGGACCGGTCC 726711 29 100.0 32 NNNNNNNNNN ............................. AAGCGCAAGGCGAGCCTTAAACGAGAGTTGTC 726772 29 100.0 32 NNNNNNNNNN ............................. TCCGGCATCCCAGCCCGCCTGGAGTGGGTCGA 726833 29 100.0 32 NNNNNNNNNN ............................. CTAGGGAGGTATCGCCATGAAGACGAAACGTC 726894 29 100.0 32 NNNNNNNNNN ............................. TTCGAGAGGAGGGAGAGAATGGAGCGGCGCCA 726955 29 100.0 32 NNNNNNNNNN ............................. TTGCGTAACGCCTACAAAGCTAGGGAGGTATC 727016 29 100.0 32 NNNNNNNNNN ............................. CGATCCGTCAGACATGATCCAGTACCCCTGCG 727077 29 100.0 32 NNNNNNNNNN ............................. CTCTTTCCGGTCAGGTCGTCCCCTACCTCGAT 727138 29 100.0 32 NNNNNNNNNN ............................. GCGTGATCCCCGGTCGCCACGGCGAACTCTGG 727199 29 100.0 32 NNNNNNNNNN ............................. GAGGAGGGTTTCTCCGTGACCATCCTAGAGAA 727260 29 100.0 32 NNNNNNNNNN ............................. TGCCTGCAGGTGCTGTTCAGCCTCCTGCTGGC 727321 29 100.0 32 NNNNNNNNNN ............................. GCGAGACCATCTACCCATGGGAGGCCGGGCCC 727382 29 100.0 33 NNNNNNNNNN ............................. TGCTCCAGGGCCTCGCCCATGGCCGACGCCGGC 727444 29 100.0 31 NNNNNNNNNN ............................. AGCTGCTCAAAAGGAGGGAGAGTGCCATGAC 727504 29 100.0 32 NNNNNNNNNN ............................A CCAGCTGAGCCGCTTTAAGCATCGCTGTCGCC 727565 29 100.0 32 NNNNNNNNNN ............................. TCCCTCAGCAGCTGACCTGCCAGGGCGTAAAT 727626 29 100.0 32 NNNNNNNNNN ............................. TCGCGGAGGCCGAACGCCGGCAGGCCGCCGGC 727687 29 100.0 33 NNNNNNNNNN ............................. CACGTAGCAGGAGGCGAGATGAGAGCAGCCGTG 727749 29 100.0 32 NNNNNNNNNN ............................. ATCTCCAACCGTGAGGCGGCCGAATGGATCAA 727810 29 100.0 32 NNNNNNNNNN .....T....................... GCAACGTGCATCTGGCTACCAAGACCCTGGTC 727871 29 100.0 32 NNNNNNNNNN ............................. CGGCGCCCGACCGGCGACATTCTCGTGCGACT 727932 29 100.0 32 NNNNNNNNNN ............................. GAAACCTGCTGGTACATCACTTACACCTACCG 727993 29 100.0 32 NNNNNNNNNN ............................. TCGTCCTGCCAGCCGCCCACCCACTTAATCCC 728054 29 100.0 32 NNNNNNNNNN ............................. ATGAAGCGTCGTCACATGAGAGTTCGTCCTGC 728115 29 100.0 34 NNNNNNNNNN ............................. TCCGCCCGGGCCACCGTGAACGGCAACAGCCTCC 728178 29 100.0 32 NNNNNNNNNN ............................. ATGAGCAGGGTCCCGTCCAGCTCAGCCGCTAC 728239 29 100.0 32 NNNNNNNNNN ............................. TCGAGGAACAGAACCGGGCGGCCCAGAAGCTC 728300 29 100.0 32 NNNNNNNNNN ............................. GTGACCAGCTACCTGTACCACCCACCCAAGCA 728361 29 100.0 34 NNNNNNNNNN ............................. CGGGCCGCCAAGGAGGCGATCGAGGCCTCCCAGC 728424 29 100.0 32 NNNNNNNNNN ............................. CGCCGCGAGCAGGCCATCATGACCCTCGCCGC 728485 29 100.0 31 NNNNNNNNNN ............................. GCCCTGCCCAAGCACATCACGGCCGAGCGCC 728545 29 100.0 33 NNNNNNNNNN ............................. ATAAGGGTCTTCACCGGATGACACCTCCGGAAC 728607 29 100.0 32 NNNNNNNNNN ............................. CTGCCCCTCCCTGATGATCCGGCCGGGGGCCC 728668 29 100.0 30 NNNNNNNNNN ............................. GAGGCGGCGCAGAATATCGCTTACGGCGCT 728727 29 100.0 32 NNNNNNNNNN ............................. GGCCCGAGCGGCCTTGTCCACGCCCTGCAGGC 728788 29 100.0 32 NNNNNNNNNN ............................. GACGCTGCCAGCATCCAGCAGTTGGGCTGCCA 728849 29 100.0 32 NNNNNNNNNN ............................. TCGGGAATTACCGTGCTCTACACGGCGCAGGA 728910 29 100.0 1 NNNNNNNNNN ......................CACG..C NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 58 29 32 GTCGTCCCCACGCGCGTGGGGGTGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-10.90] Score: 0/0.37 # Array degeneracy analysis suggestion: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [126,894] Score: 0.18/0.18 # # Final direction: R [0.41,0.55 Confidence: LOW] >NC_006270 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 815942 23 100.0 49 NNNNNNNNNN ..TC.A..G.....G.....TC. GACCGGAGCGACAGGCCCGACAGGAGCAACGGGAGCGACAGGCCCGACA 816014 23 100.0 49 NNNNNNNNNN .....A..G.....G..C..CC. GACAGGAGCAACAGGAGCGACCGGCCCGACAGGAGCGACAGGCCCGACA 816086 23 100.0 67 NNNNNNNNNN .....A..G.....G..C..CC. GACAGGAGCAACAGGAGCGACCGGCCCGACAGGAGCGACAGGCCCGACAGGAGCGACAGGCCCGACA 816176 23 100.0 85 NNNNNNNNNN .....A........G..C..... AACGGGAGCAACCGGCCCGACAGGCCCGACAGGAGCAACAGGGGCGACAGGCCCGACAGGAGCAACGGGAGCGACCGGCCCGACA 816284 23 100.0 76 NNNNNNNNNN .....A........G..C..CC. GACAGGAGCGACCGGAGCAACAGGAGCGACCGGAGCAACAGGAGCGACAGGAGCGACAGGAGCAACAGGAGCGACC 816383 23 100.0 58 NNNNNNNNNN .....A..G........C..CC. GACCGGCCCGACAGGAGCAACAGGAGCGACCGGCCCGACAGGAGCGACAGGCCCGACA 816464 23 100.0 58 NNNNNNNNNN .....A..G.....G..A..CC. GACAGGTCCAACGGGAGCCACCGGCCCGACGGGAGCAACGGGAGCGACCGGCCCGACA 816545 23 100.0 40 NNNNNNNNNN ........C........A..TC. AACAGGAGCGACAGGAGCGACCGGAGCAACAGGTCCAACA 816608 23 100.0 31 NNNNNNNNNN ........C........A..... GACAGGTCCGACGGGAGCGACCGGCCCGACA 816662 23 100.0 31 NNNNNNNNNN ..TC....C.............. GACAGGTCCGACCGGAGCAACGGGAGCGACA 816716 23 100.0 58 NNNNNNNNNN ........C.............. GACCGGCCCGACAGGAGCAACGGGAGCAACGGGAGCGACAGGTCCGACGGGAGCGACA 816797 23 100.0 40 NNNNNNNNNN ........C.............. GACCGGCCCGACAGGAGCAACAGGTCCAACAGGAGCGACA 816860 23 100.0 67 NNNNNNNNNN ....................... AACGGGAGCGACAGGTCCGACAGGAGCAACAGGAGCCACCGGCCCGACCGGAGCCACCGGAGCAACA 816950 23 100.0 49 NNNNNNNNNN ....................... GACAGGTCCGACGGGAGCAACGGGAGCGACAGGAGCAACGGGAGCGACC 817022 23 100.0 58 NNNNNNNNNN ..CC................... AACGGGAGCAACAGGTCCAACAGGAGCGACAGGAGCGACAGGAGCAACGGGAGCGACC 817103 23 100.0 40 NNNNNNNNNN ..CC....C.....C..C..... AACAGGAGCGACAGGAGCAACGGGAGCAACGGGAGCGACA 817166 23 100.0 31 NNNNNNNNNN ..TC.............A..... CACCGGCCCGACCGGAGCCACCGGAGCAACA 817220 23 100.0 22 NNNNNNNNNN ....................... GACAGGTCCGACGGGAGCAACG 817265 23 100.0 31 NNNNNNNNNN .................A..... CACCGGCCCGACCGGAGCCACCGGAGCAACA 817319 23 100.0 22 NNNNNNNNNN ....................... GACAGGTCCGACGGGAGCAACG 817364 23 100.0 22 NNNNNNNNNN ...........TC.G........ AACGGGAGCAACAGGTCCAACA 817409 23 100.0 40 NNNNNNNNNN ........C.............. CACCGGCCCGACCGGAGCCACCGGAGCAACAGGTCCAACA 817472 23 100.0 22 NNNNNNNNNN ........C.............. CACCGGCCCGACAGGAGCGACC 817517 23 100.0 22 NNNNNNNNNN .....C..C.............. GACAGGTCCGACAGGAGCAACA 817562 23 100.0 22 NNNNNNNNNN ....T.................. GACAGGTCCAACAGGAGCGACA 817607 23 100.0 22 NNNNNNNNNN ..............T........ AACAGGAGCCACCGGCCCGACC 817652 23 100.0 22 NNNNNNNNNN .....A..G.............. GACAGGTCCAACAGGAGCCACC 817697 23 100.0 31 NNNNNNNNNN .....A.....TC....A..... CACCGGTCCGACCGGTCCAACAGGAGCGACA 817751 23 100.0 22 NNNNNNNNNN .....A..C........A..... CATCGGCCCGACCGGAGCGACC 817796 23 100.0 31 NNNNNNNNNN ..CC.............A..... GACCGGCCCGACAGGAGCAACAGGAGCGACC 817850 23 100.0 1 NNNNNNNNNN ..CC.......TC....A..... NNNNNNNNNN ========== ====== ====== ====== ========== ======================= 31 23 40 GGAGCGACAGGAGCAACGGGAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [7,] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [35-24] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [45.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [700,772] Score: 0/0.18 # # Final direction: R [0.37,0.68 Confidence: LOW] >NC_006300 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1630162 37 100.0 36 TTACTCCAAA ..................................... CAACTATCGTTACAAAACTAGTGACGCAATGAATGG 1630235 37 100.0 34 CAATGAATGG ..................................... AAAACGCTTACGGCGATATGGACGAGAGTTATCT 1630306 37 100.0 33 AGAGTTATCT ..................................... GACAACGACCGGCTATGACGGCAAATTATATAT 1630376 37 100.0 35 AATTATATAT ..................................... TCAAATTCATTCGTCGTTTAGTCACAATCCAAATC 1630448 37 100.0 36 AATCCAAATC ..................................... CTAACCAATATCAATTATTAACCATCAACTACCAAT 1630521 37 100.0 35 AACTACCAAT ..................................... TAAACTTGATACATCTATTGTCGAAGAAGTATTAA 1630593 37 100.0 34 GAAGTATTAA ..................................... TAAACATTTGGCCAAATATGGTGTATGTGAAACA 1630664 37 100.0 35 ATGTGAAACA ..................................... AAAATCACTTTAGTAAAAATGAATGCAGTCACTAA 1630736 37 100.0 36 CAGTCACTAA ..................................... TTAAAGGGCTATTTGCCAAAAAATTACTACGCCACT 1630809 37 100.0 36 CTACGCCACT ..................................... ATGTGCAAGCGCTATACCCAATAGATATGCTAAAAA 1630882 37 100.0 33 ATGCTAAAAA ..................................... TTTATCAATCCCGTTCAGGACGCCAATACATGA 1630952 37 100.0 CAATACATGA ..................................... TGCGGTAAGC ========== ====== ====== ====== ========== ===================================== 12 37 34 GTTTCAATCCCTTTAAGACAGGGCAAGGTCTTTCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.05%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [464,220] Score: 0.18/0.18 # # Final direction: R [0.18,5.14 Confidence: HIGH] >NC_006366 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 45916 28 100.0 32 GATGTTGCTA ............................ TTTACAATTCAGTTACAAATTAATTATTGCAA 45976 28 100.0 32 ATTATTGCAA ............................ TAAAGGCTGAATCACTTGCGGCCATGTACATA 46036 28 100.0 32 CATGTACATA ............................ TAGGCAAGTGGGATAAGCCTTACATGCAAAAA 46096 28 100.0 32 CATGCAAAAA ............................ GTAACTCAACAGCAGGGCCTTTCTGAGGCCAA 46156 28 100.0 32 CTGAGGCCAA ............................ GTTATGCGAATGGTAGTTTGTCGGATTATTTT 46216 28 100.0 32 GGATTATTTT ............................ TGTTAGATTTTTGTATGGGATCAGGTACTACA 46276 28 100.0 32 AGGTACTACA ............................ GAAGGATCATTAGAAAATCTTTTACGCAAACT 46336 28 100.0 32 TACGCAAACT ............................ GTAAGATTGTTTTTTCTCCTAATTCTGCATTA 46396 28 100.0 32 TTCTGCATTA ............................ CATCGAGCCACGGCAAAAATTGGTTTTTAAAA 46456 28 100.0 GTTTTTAAAA ............................ TCTGCTCTAAA ========== ====== ====== ====== ========== ============================ 10 28 32 TTTCTAAGCTGCCTGTACGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,8] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [445,233] Score: 0/0.18 # # Final direction: R [0,1.51 Confidence: HIGH] >NC_006366 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 43277 28 96.4 32 ACATAATAAC -........................... ATATGTTTCGAATTCTTGATTAAAAATATCGC 43337 28 100.0 32 AAAATATCGC ............................ AGAAGACCTTTTAAGCGCCGTTGTCGGCATTT 43397 28 100.0 32 GTCGGCATTT ............................ AGGTCTTTTTGCCCGTTTTTTTATCTTCATGT 43457 28 100.0 32 ATCTTCATGT ............................ TACGTCTTTAGATGAGGTCATAACCACGTATT 43517 28 100.0 32 ACCACGTATT ............................ TGTCTCTGTTTGCTTTGGGGCACAATCCAGCA 43577 28 100.0 32 CAATCCAGCA ............................ AGAATCCTGAGGATTATGTTTTGTTCGAATTG 43637 28 100.0 32 GTTCGAATTG ............................ GTTAGGTTCCGGAGGCGGTGACACGGCGGACA 43697 28 100.0 32 ACGGCGGACA ............................ GCGCAAAGGTTAGAAAGCAAGTCATGAGGTAA 43757 28 100.0 32 CATGAGGTAA ............................ AGTTTATCTGATGTTGAAAGATTAACTGTTAA 43817 28 96.4 32 TAACTGTTAA ............T............... GATAAAAGCGGTCTATGCGGCCGACAAATTCC 43877 28 100.0 32 GACAAATTCC ............................ ACATTTGTGTTAGGTTTAGTTGCGCCTCTTGT 43937 28 100.0 32 CGCCTCTTGT ............................ CTTATAAGCCATCAAATGCTGCTGGAACTGCT 43997 28 100.0 32 TGGAACTGCT ............................ TCTACAGAAAGAAGGCTATATCTAAATAGATA 44057 28 100.0 32 TAAATAGATA ............................ ACACCAAGTTTAGGGCGTATGTCGGCGGCTTT 44117 28 100.0 32 CGGCGGCTTT ............................ CTTGAGTTGCAGACCCCGGGTCTTGCTGCTGA 44177 28 100.0 32 TTGCTGCTGA ............................ CGCCGGTATATGACGCTGAATTAAATTTTATA 44237 28 100.0 32 AAATTTTATA ............................ ATTGACGATAGCGTTACCTACTAAGTGCAAGC 44297 28 100.0 32 AAGTGCAAGC ............................ CATGGAGTAATTATTAATCTAAGTTCAGGGCA 44357 28 100.0 32 GTTCAGGGCA ............................ CAGGTAAAATATATTCGACTGAAATCTCAATC 44417 28 100.0 32 AATCTCAATC ............................ CTGGTCGAGCTCGTCATAGCTAAGGGCTAGTA 44477 28 100.0 32 AGGGCTAGTA ............................ TAGCAATTACTTGCTTTGCTTCTTCACATATC 44537 28 100.0 32 TTCACATATC ............................ GAAAGGGCAATAGTTAAGCGCATGGCACAAGC 44597 28 100.0 32 TGGCACAAGC ............................ TGACCCGTCAACTAAATGGTGGAGCACGTTTT 44657 28 100.0 32 AGCACGTTTT ............................ TGTATTTGTTTTTCAAGCTGCTCAAGCTCAGA 44717 28 100.0 32 CAAGCTCAGA ............................ AATACCGGCACATTCACGGTGTAGGTGCACAT 44777 28 100.0 32 AGGTGCACAT ............................ TCTTCCGTACTTCTCACCATACTCACCACAGT 44837 28 100.0 32 TCACCACAGT ............................ TTAACGAAAGGTTTATTTACAGTTCAAAATGA 44897 28 100.0 32 TTCAAAATGA ............................ ATGCTAGTACCTACCCTATCGTTCATGAATTA 44957 28 100.0 32 TCATGAATTA ............................ TCTACAAAAGAGGCCATAAGAGCAACTCTCAA 45017 28 100.0 32 CAACTCTCAA ............................ ATTAGATGCCCAGCGTGTAAAGGGACTAAGAA 45077 28 100.0 32 GGACTAAGAA ............................ CTTTTACTGATTCTTCAACTATCTGTTCAATT 45137 28 100.0 32 CTGTTCAATT ............................ GTTAGGTTCTGGCGGCGGCGACACGGCAGACA 45197 28 100.0 32 ACGGCAGACA ............................ ATTAACAGCCTTCATCATTTCCAAGCCCGCAG 45257 28 100.0 32 AAGCCCGCAG ............................ AATATGATGCGTGTAAAATATTAGAGCTGGAA 45317 28 100.0 32 AGAGCTGGAA ............................ CCATTATCTGAGCAGATTAAAAAAATGGTAAT 45377 28 100.0 32 AAATGGTAAT ............................ GCTGAATGATTCTCCGAAAACCCCATCGAGTG 45437 28 100.0 32 CCATCGAGTG ............................ GTTCCCCATCTCTTGAGCAGAAAAACAATTTT 45497 28 100.0 32 AAACAATTTT ............................ TTAGAGCAATACATACGAGATAATTATACGCC 45557 28 100.0 32 ATTATACGCC ............................ TGTTTTATAGTGAGATTCGTTTAAGTCTGATA 45617 28 100.0 32 AAGTCTGATA ............................ AGAGTATAGGAAATTAGAAGCTGGAACAAAAA 45677 28 100.0 32 GGAACAAAAA ............................ CACCATATAAGAACAATCGAAGTTCCGAATGT 45737 28 100.0 32 TTCCGAATGT ............................ TTGTTTTAGGCAGTTTAAAAGGATTGTTTACA 45797 28 100.0 32 ATTGTTTACA ............................ CAACATCGGGGGGTTTAGCCTCAGCAACACCA 45857 28 100.0 572 AGCAACACCA ............................ TGCTAGGAGAGTTATAAATGCTGATGTTGCTATTTCTAAGCTGCCTGTACGGCAGTGAACTTTACAATTCAGTTACAAATTAATTATTGCAATTTCTAAGCTGCCTGTACGGCAGTGAACTAAAGGCTGAATCACTTGCGGCCATGTACATATTTCTAAGCTGCCTGTACGGCAGTGAACTAGGCAAGTGGGATAAGCCTTACATGCAAAAATTTCTAAGCTGCCTGTACGGCAGTGAACGTAACTCAACAGCAGGGCCTTTCTGAGGCCAATTTCTAAGCTGCCTGTACGGCAGTGAACGTTATGCGAATGGTAGTTTGTCGGATTATTTTTTTCTAAGCTGCCTGTACGGCAGTGAACTGTTAGATTTTTGTATGGGATCAGGTACTACATTTCTAAGCTGCCTGTACGGCAGTGAACGAAGGATCATTAGAAAATCTTTTACGCAAACTTTTCTAAGCTGCCTGTACGGCAGTGAACGTAAGATTGTTTTTTCTCCTAATTCTGCATTATTTCTAAGCTGCCTGTACGGCAGTGAACCATCGAGCCACGGCAAAAATTGGTTTTTAAAA 46457 28 100.0 GTTTTTAAAA ............................ TCTGCTCTAA ========== ====== ====== ====== ========== ============================ 45 28 44 TTTCTAAGCTGCCTGTACGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,8] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [50.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [518,232] Score: 0.18/0.18 # # Final direction: R [0.18,1.92 Confidence: HIGH] >NC_006300 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 952720 32 100.0 33 TAGCGGATGT ................................ AAAACAATCTATGCTTACGATGTTTTTATAAGC 952785 32 96.9 35 TTTTATAAGC .C.............................. GCCGTAGCCGTGATTTACGCACGCGTCAAAAAACT 952852 32 100.0 36 TCAAAAAACT ................................ GCCTCATAACTAATACCTGCCGGGTCGGCAAATTCG 952920 32 100.0 34 GGCAAATTCG ................................ GTCAAACAGCGCGCCAATCATGGCGTGGTCACCC 952986 32 100.0 35 GTGGTCACCC ................................ TTTTCCGCGGCTTTTTCGGCGTTTGTTACCGCTGC 953053 32 100.0 34 TTACCGCTGC ................................ CCACGCGCTCTTAAATCCTCAACGACGGCTGAAT 953119 32 100.0 34 ACGGCTGAAT ................................ CTCTTTTGCATTGATGACAGGCGCCAGAATGACG 953185 32 100.0 34 CAGAATGACG ................................ CGCAATACTAAAAGGCTTTAGCGCCCAGGAAATC 953251 32 100.0 34 CCAGGAAATC ................................ AACTGCAAAACGCCCAGGAATCACGCAATGAAAG 953317 32 96.9 34 GCAATGAAAG .......................C........ TTCTACGCCTAAAAAACAAATGATTAAATTTATA 953383 32 100.0 34 TAAATTTATA ................................ ATCAACCAAATACTTGCCTTTATCAACAAAAAGC 953449 32 100.0 32 AACAAAAAGC ................................ TTGGGGGGGTATGGAGACATAACCATCATTGA 953513 32 100.0 34 CCATCATTGA ................................ AGATTTTCAACATCTCAGTTTATTTGCTGATTTT 953579 32 100.0 TGCTGATTTT ................................ GCCAATGCTTT ========== ====== ====== ====== ========== ================================ 14 32 34 GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [6,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.50,-6.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [228,43] Score: 0.18/0.18 # # Final direction: R [0.55,5.14 Confidence: HIGH] >NC_006300 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 954864 32 100.0 36 TACATTCCAG ................................ GCCTCATAACTAATACCTGCCGGGTCGGCAAATTCG 954932 32 100.0 34 GGCAAATTCG ................................ GTCAAACAGCGCGCCAATCATGGCGTGGTCACCC 954998 32 100.0 35 GTGGTCACCC ................................ TTTTCCGCGGCTTTTTCGGCGTTTGTTACCGCTGC 955065 32 100.0 34 TTACCGCTGC ................................ GACTTGTAATAATGATTAATTACTGCTGAAGCAG 955131 32 100.0 34 GCTGAAGCAG ................................ TTGTAATAATTCATTTGATACGCGGATAATTTTT 955197 32 100.0 34 GATAATTTTT ................................ TTTAACATAATTGAGCCGTTACCCACACCATCAA 955263 32 100.0 33 ACACCATCAA ................................ GTAAACTGCTTAACAGTAGCATACACATTTGCA 955328 32 100.0 33 CACATTTGCA ................................ TTTTTTATTACCCAAAAATCAAACCCAATAGGA 955393 32 100.0 34 CCCAATAGGA ................................ GCCGGTACCTCCAGGCGCCCCAACAGACATCGAC 955459 32 100.0 33 AGACATCGAC ................................ TTAAAAGAGCAACGCGCCAAAAACTTTTTAACA 955524 32 100.0 34 CTTTTTAACA ................................ GACAAAAGCACAAGGGGTAATCCACTTTCAAAAG 955590 32 100.0 35 CTTTCAAAAG ................................ TTGGGCTTGTGCGTGTGGTCATGGGGTCAGTTGCA 955657 32 100.0 35 GTCAGTTGCA ................................ TTTCAGCGGACATTGCTTTCATCGAGTCCATACTA 955724 32 100.0 33 GTCCATACTA ................................ GCGATTGCGGGCTACAACCAAAAGACTTGACCA 955789 32 100.0 35 GACTTGACCA ................................ GTATGTTGATCGTAAAACTTGGATTGCTTATTGCC 955856 32 100.0 32 GCTTATTGCC ................................ ATTATCATGCAATTGATTTTGATAAAAAAACG 955920 32 100.0 34 TAAAAAAACG ................................ CATACGTTCGCCAGTCATTTTATGATGAACGGGG 955986 32 100.0 34 ATGAACGGGG ................................ ACGTGGGCGATATAAAAAACAATATTGCGATGTG 956052 32 100.0 35 TTGCGATGTG ................................ GCGAGGCGATAGAACATCTGATAAGGGTAACAAGC 956119 32 100.0 34 GGTAACAAGC ................................ AATCTCTTATTGTGTAGTATGTGTCCCAGATATC 956185 32 100.0 33 CCCAGATATC ................................ TATCTGCTCATGCCACTTATTGTATCTTTAGCA 956250 32 100.0 34 ATCTTTAGCA ................................ GGAAACAGACGATATCAATTCTGCGCACTTAGTT 956316 32 100.0 34 GCACTTAGTT ................................ GTAATAAAGAGGTGGTAGGTGGTAGTAGGGTTGT 956382 32 100.0 33 GTAGGGTTGT ................................ TGATGTAGATTTTTTCTTTTTCAGAATTTCGTG 956447 32 100.0 38 GAATTTCGTG ................................ ACAGACTAAACTGGAAATATTAAGCTTACCGATAACAA 956517 32 100.0 34 CCGATAACAA ................................ TATTACATGTTTAGTTTGTATGCTAATCAATATA 956583 32 100.0 35 AATCAATATA ................................ ATAAGTATATCTATATTCAAGCAGAACAAGCAGTA 956650 32 100.0 34 ACAAGCAGTA ................................ CAAGTAGTACTGATAAAAAAAGAAACATTTGAAA 956716 32 100.0 34 ACATTTGAAA ................................ TATGTTAGGGTTTGTTGGCGCCGAGAAAATCCGT 956782 32 100.0 33 GAAAATCCGT ................................ GACGAATGGACCTTAATTAATGGACAAGCAGGA 956847 32 100.0 33 ACAAGCAGGA ................................ AACATCGTATTAAATACGCGAGATTTATTTGAT 956912 32 100.0 34 TTTATTTGAT ................................ GTACTTTAATCTTTCATTTTCCGCCTGCCAAAAA 956978 32 100.0 CTGCCAAAAA ................................ AGCCTTAACT ========== ====== ====== ====== ========== ================================ 33 32 34 GTTTCAATTCACGCTCTCGTGTGAGAGCGGAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [6,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.50,-6.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [75,186] Score: 0.18/0.18 # # Final direction: R [0.37,5.05 Confidence: HIGH] >NC_006322 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 815793 23 100.0 49 NNNNNNNNNN ..TC.A..G.....G.....TC. GACCGGAGCGACAGGCCCGACAGGAGCAACGGGAGCGACAGGCCCGACA 815865 23 100.0 49 NNNNNNNNNN .....A..G.....G..C..CC. GACAGGAGCAACAGGAGCGACCGGCCCGACAGGAGCGACAGGCCCGACA 815937 23 100.0 67 NNNNNNNNNN .....A..G.....G..C..CC. GACAGGAGCAACAGGAGCGACCGGCCCGACAGGAGCGACAGGCCCGACAGGAGCGACAGGCCCGACA 816027 23 100.0 85 NNNNNNNNNN .....A........G..C..... AACGGGAGCAACCGGCCCGACAGGCCCGACAGGAGCAACAGGGGCGACAGGCCCGACAGGAGCAACGGGAGCGACCGGCCCGACA 816135 23 100.0 76 NNNNNNNNNN .....A........G..C..CC. GACAGGAGCGACCGGAGCAACAGGAGCGACCGGAGCAACAGGAGCGACAGGAGCGACAGGAGCAACAGGAGCGACC 816234 23 100.0 58 NNNNNNNNNN .....A..G........C..CC. GACCGGCCCGACAGGAGCAACAGGAGCGACCGGCCCGACAGGAGCGACAGGCCCGACA 816315 23 100.0 58 NNNNNNNNNN .....A..G.....G..A..CC. GACAGGTCCAACGGGAGCCACCGGCCCGACGGGAGCAACGGGAGCGACCGGCCCGACA 816396 23 100.0 40 NNNNNNNNNN ........C........A..TC. AACAGGAGCGACAGGAGCGACCGGAGCAACAGGTCCAACA 816459 23 100.0 31 NNNNNNNNNN ........C........A..... GACAGGTCCGACGGGAGCGACCGGCCCGACA 816513 23 100.0 31 NNNNNNNNNN ..TC....C.............. GACAGGTCCGACCGGAGCAACGGGAGCGACA 816567 23 100.0 58 NNNNNNNNNN ........C.............. GACCGGCCCGACAGGAGCAACGGGAGCAACGGGAGCGACAGGTCCGACGGGAGCGACA 816648 23 100.0 40 NNNNNNNNNN ........C.............. GACCGGCCCGACAGGAGCAACAGGTCCAACAGGAGCGACA 816711 23 100.0 67 NNNNNNNNNN ....................... AACGGGAGCGACAGGTCCGACAGGAGCAACAGGAGCCACCGGCCCGACCGGAGCCACCGGAGCAACA 816801 23 100.0 49 NNNNNNNNNN ....................... GACAGGTCCGACGGGAGCAACGGGAGCGACAGGAGCAACGGGAGCGACC 816873 23 100.0 58 NNNNNNNNNN ..CC................... AACGGGAGCAACAGGTCCAACAGGAGCGACAGGAGCGACAGGAGCAACGGGAGCGACC 816954 23 100.0 40 NNNNNNNNNN ..CC....C.....C..C..... AACAGGAGCGACAGGAGCAACGGGAGCAACGGGAGCGACA 817017 23 100.0 31 NNNNNNNNNN ..TC.............A..... CACCGGCCCGACCGGAGCCACCGGAGCAACA 817071 23 100.0 22 NNNNNNNNNN ....................... GACAGGTCCGACGGGAGCAACG 817116 23 100.0 31 NNNNNNNNNN .................A..... CACCGGCCCGACCGGAGCCACCGGAGCAACA 817170 23 100.0 22 NNNNNNNNNN ....................... GACAGGTCCGACGGGAGCAACG 817215 23 100.0 22 NNNNNNNNNN ...........TC.G........ AACGGGAGCAACAGGTCCAACA 817260 23 100.0 40 NNNNNNNNNN ........C.............. CACCGGCCCGACCGGAGCCACCGGAGCAACAGGTCCAACA 817323 23 100.0 22 NNNNNNNNNN ........C.............. CACCGGCCCGACAGGAGCGACC 817368 23 100.0 22 NNNNNNNNNN .....C..C.............. GACAGGTCCGACAGGAGCAACA 817413 23 100.0 22 NNNNNNNNNN ....T.................. GACAGGTCCAACAGGAGCGACA 817458 23 100.0 22 NNNNNNNNNN ..............T........ AACAGGAGCCACCGGCCCGACC 817503 23 100.0 22 NNNNNNNNNN .....A..G.............. GACAGGTCCAACAGGAGCCACC 817548 23 100.0 31 NNNNNNNNNN .....A.....TC....A..... CACCGGTCCGACCGGTCCAACAGGAGCGACA 817602 23 100.0 22 NNNNNNNNNN .....A..C........A..... CATCGGCCCGACCGGAGCGACC 817647 23 100.0 31 NNNNNNNNNN ..CC.............A..... GACCGGCCCGACAGGAGCAACAGGAGCGACC 817701 23 100.0 1 NNNNNNNNNN ..CC.......TC....A..... NNNNNNNNNN ========== ====== ====== ====== ========== ======================= 31 23 40 GGAGCGACAGGAGCAACGGGAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [7,] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [35-24] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [45.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [700,772] Score: 0/0.18 # # Final direction: R [0.37,0.68 Confidence: LOW] >NC_006347 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2924388 29 100.0 37 NNNNNNNNNN G.CCT........................ CAGTGCAGCACATCGTAATATCTTGCATTTTGCACAA 2924454 29 100.0 35 NNNNNNNNNN ............................. CAGCTCTTTTTCGTTTGCATCAAGTGCTCTCTTTT 2924518 29 100.0 35 NNNNNNNNNN ............................. ACCAGCGATTCACTCGACAAATTTCTCAAACCTTT 2924582 29 100.0 35 NNNNNNNNNN ............................. AATGAATAAGGATAAGAGAATACATTCTTTTACTA 2924646 29 100.0 35 NNNNNNNNNN ............................. ATTGCGCTTTCTGTGCGATATTGGCGAGGGTATAT 2924710 29 100.0 35 NNNNNNNNNN ............................. AGAGGCGTGCTTCTTCATTAAGCCTGTCTATATGA 2924774 29 100.0 35 NNNNNNNNNN ............................. ACAACAGGAACTTTGCCTGTACTGCTTGGAACGAA 2924838 29 100.0 36 NNNNNNNNNN ............................. ATCACACAGTATCACAAAGAACATAGTGATCAACCA 2924903 29 100.0 35 NNNNNNNNNN ............................. ACTAAAAATGTCATGGGTGGATGCTCGTTTAAATA 2924967 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 10 29 35 ATTTCAATTCCATAAGGTACAATTAATAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.40,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [71.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [180,214] Score: 0/0.18 # # Final direction: R [0.27,5.28 Confidence: HIGH] >NC_006361 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 4459382 29 100.0 32 NNNNNNNNNN .C.GGAT.AT..C..C............. CTATCGCACAGCACCCATAGGTTGTTGTCGTC 4459443 29 100.0 32 NNNNNNNNNN ..A...........A.............. GGCGGGGGCGGGGGTGGCGGCGGCGGTACCGG 4459504 29 100.0 30 NNNNNNNNNN ..............A........AGCAC. GCTTCCCCGACGACGGCGGCGCCCGTTCGC 4459563 29 100.0 32 NNNNNNNNNN ..............A.............. TCGACCTGGCGGCGCTGGACCTCATCCCAGTA 4459624 29 100.0 32 NNNNNNNNNN C.............A.............. CTGGTCACCGCAGTCGCGCCGTTGATCCCGCT 4459685 29 100.0 32 NNNNNNNNNN ..............A.............. GGGCTGTCGCCGATGTCAGGGCCGTCAGCGGT 4459746 29 100.0 32 NNNNNNNNNN ............................. AAGACCGCGGCCACCCAGGGCAAGTTCATGCT 4459807 29 100.0 32 NNNNNNNNNN ..C.......................... CTACCGCCGAAACGATTCGATCCAAATAGATG 4459868 29 100.0 32 NNNNNNNNNN T............................ TCGGGTGGTTCATCTCGTTCGTCGCCGTCCCC 4459929 29 100.0 32 NNNNNNNNNN ............................. CTCGGCGGCGGGCTGATCGCGATGATCTTGTC 4459990 29 100.0 32 NNNNNNNNNN ............................. GCCTGGCTGGATGAGCAGCTGGGTCGGCAACG 4460051 29 100.0 32 NNNNNNNNNN ............................. TCGCCCATCACCGTCGCGAACCGGATCAAGAA 4460112 29 100.0 32 NNNNNNNNNN ...................T..A...... ACCGTGATGGTCGTAGCCGTCTCGGCGGCGCT 4460173 29 100.0 32 NNNNNNNNNN ............................. GGGCGCGGACCCGGCCCACGACCACCTCGTCG 4460234 29 100.0 32 NNNNNNNNNN ............................. GCGGAAGCGACCGCGGAATTTCCGACCTCAAG 4460295 29 100.0 32 NNNNNNNNNN ............................. GAGCTGGTGGAGGTGATGCGGGAACGGCTGCC 4460356 29 100.0 32 NNNNNNNNNN ............................. GGACGGCACAACGCAGCCAGGTTCGACAGCCG 4460417 29 100.0 32 NNNNNNNNNN ............................. AGCTGTCGGAGCCGAAGGTGTGCGAGGGCGGC 4460478 29 100.0 32 NNNNNNNNNN ............................. GAAGAATGGCTGAGCGAGCACGAGGTAGCCGA 4460539 29 100.0 32 NNNNNNNNNN C............................ TCGCGGGCCGATTCGTAGTACGACTAAATAGC 4460600 29 100.0 32 NNNNNNNNNN C.A.......................... GGGGAGCAGGCGCAGCAGTGCGGTTGGGCCGC 4460661 29 100.0 33 NNNNNNNNNN ............................. TTGGTGGTTCTCGGGAGTGCGCGTCACTGCCTC 4460723 29 100.0 32 NNNNNNNNNN ............................. CATGCGCTCGATCTGCTTGACGGACATTACAA 4460784 29 100.0 32 NNNNNNNNNN ............................. CGCACGGTGTACCGCCGCGCCTGAGTGGCTGG 4460845 29 100.0 32 NNNNNNNNNN ............................. TAGCGGATCATGTCCGACTCCTTTGGATAGAG 4460906 29 100.0 32 NNNNNNNNNN ............................. CCCACGGGAATGTCCTCGCCCTGCGGCAGCCT 4460967 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 27 29 31 GGGCTCATCCCCGCGTGCGCGGGGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [3,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [23-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [30.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [657,198] Score: 0.18/0.18 # # Final direction: R [0.18,0.68 Confidence: MEDIUM] >NC_006369 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3243127 28 100.0 32 NNNNNNNNNN ............................ TTTTAAAAAACTTTAAGTTCTTTTCTGAAACA 3243187 28 100.0 32 NNNNNNNNNN ............................ CGATGAATCAACTATCAATAGATGGCGTTTAC 3243247 28 100.0 32 NNNNNNNNNN ............................ AATAAACAAAATTTGGAGTTAAATGTGAATGA 3243307 28 100.0 32 NNNNNNNNNN ............................ TTCAGCACATCATATGCGCAGTTAATCAACTT 3243367 28 100.0 32 NNNNNNNNNN ............................ ATACCGACACATTTTAATGGGATGGGGTGTCT 3243427 28 100.0 32 NNNNNNNNNN ............................ ACTTAATATTACCGAGCTAACATCAGCTAAAA 3243487 28 100.0 32 NNNNNNNNNN ............................ TATCGCAAGGCGTGTTCTTTGTATCATCCAGA 3243547 28 100.0 32 NNNNNNNNNN ............................ TGAAAAAACATTACACAATGATTCTACTATAC 3243607 28 100.0 32 NNNNNNNNNN ............................ ATTACACATATGACACTTAATCATTATCAATC 3243667 28 100.0 32 NNNNNNNNNN ............................ ATCCTAAGCACAAGCTCGCGCACTGTAGCCGT 3243727 28 100.0 32 NNNNNNNNNN ............................ TGTATCCACTGGAGACTCTCTTCTAATTCTTA 3243787 28 100.0 32 NNNNNNNNNN ............................ TGCTGAATCAAATTGACGCCTATAAGTTAAAT 3243847 28 100.0 32 NNNNNNNNNN ............................ TCTTTAACTTCTCTAATTATAGTACTGTTATC 3243907 28 100.0 32 NNNNNNNNNN ............................ AGCAAAAAAACGAATCGTCGTCAAGCGCAAGT 3243967 28 100.0 32 NNNNNNNNNN ............................ ATCTGCTTCATAAATTAAAAATGGAGAACTAG 3244027 28 100.0 33 NNNNNNNNNN ............................ CACCATTAACAGTTCCTGCGAGTACCGGCACCA 3244088 28 100.0 32 NNNNNNNNNN ............................ ATAACAGCGCAAGAGATTAAGGGATAGATAAA 3244148 28 100.0 32 NNNNNNNNNN ............................ TTCTCAACACAGTCTTTTTTGCCATCTCTTCA 3244208 28 100.0 32 NNNNNNNNNN ............................ TATACCGACTGCGCTTCCGGTGGTTCTTTGTG 3244268 28 100.0 32 NNNNNNNNNN ............................ AAAAGCCAACCGAGACAGCCAAAAAGAGCTTA 3244328 28 100.0 32 NNNNNNNNNN ............................ ATTGTGCCCAAGCCAAGGTTGGTTCTTGCGTC 3244388 28 100.0 32 NNNNNNNNNN ............................ ATAGTGAAAGTAACATAACCACGAGCAAAAAG 3244448 28 100.0 32 NNNNNNNNNN ............................ TGATTGGTTTCTTTTTCTTGACTGTTCTTTGA 3244508 28 100.0 32 NNNNNNNNNN ............................ TCTGATAGCGCAACGGCACTGGCCACCCAGCA 3244568 28 100.0 32 NNNNNNNNNN ............................ AGACAAGACTGGAACAATATCTCCAGCCTGTA 3244628 28 100.0 32 NNNNNNNNNN ............................ ATGAGCCAGTCGTATTTCATCTTGTTTTAGTA 3244688 28 100.0 32 NNNNNNNNNN ............................ AGGCAGTCGGAGAGCAGGAAAACACGGAAATC 3244748 28 100.0 32 NNNNNNNNNN ............................ GCTTGCTGTTGCTTTGCTTGTGCGTATTGCAC 3244808 28 100.0 32 NNNNNNNNNN ............................ ATTTGAAAAATCTATCCCTAAATCTTATGTAC 3244868 28 100.0 32 NNNNNNNNNN ............................ TCTTTGAAATGACAAAAAGGTATTATGAGTAC 3244928 28 100.0 32 NNNNNNNNNN ............................ ACAAGAAAGCGTGGACTTAATAGAGTTACTAG 3244988 28 100.0 32 NNNNNNNNNN ............................ TTCCCACGATGCCAGCGAGCAAGAAACAGAGG 3245048 28 100.0 32 NNNNNNNNNN ............................ GTCCATCCTTGCGTTTCCTTCCTTGTCGTATG 3245108 28 100.0 32 NNNNNNNNNN ............................ ATTTCGCCTTCAACGTCATGCGATAAATTTTT 3245168 28 100.0 32 NNNNNNNNNN ............................ GCTTGAACTTCTGCGACTGCTCTATCGGATTG 3245228 28 100.0 32 NNNNNNNNNN ............................ TTTGGCTTCCAATGGCGTTGTATTAACAAAAA 3245288 28 100.0 32 NNNNNNNNNN ............................ AGTCGCAACATTCCCGATTGACAAGTAAAGAC 3245348 28 100.0 32 NNNNNNNNNN ............................ ATATTCTGTTTGACCAAAGCAATCATTTGAAT 3245408 28 100.0 32 NNNNNNNNNN ............................ TACAAGTCAAAATTTTCTATTTCTTTGACAGC 3245468 28 100.0 32 NNNNNNNNNN ............................ ATAGATGTTACGTTAGACCAAAGTCATTTGGG 3245528 28 100.0 32 NNNNNNNNNN ............................ TTGCAGCGAAGGAGAAGTGCCATAATGTACAA 3245588 28 100.0 32 NNNNNNNNNN ............................ TTCACAACGCCTGGGTTAGTGCTAGGAGCAGA 3245648 28 100.0 32 NNNNNNNNNN ............................ TTCGCGTCTTTAATCTGTATATTCGGGTGTTA 3245708 28 100.0 33 NNNNNNNNNN ............................ AATAAGGTCGAACTGCTACACTAAGTTTACACC 3245769 28 100.0 32 NNNNNNNNNN ............................ ACTACATTCTTTAATACTTGTGCCATTTCTTA 3245829 28 100.0 32 NNNNNNNNNN ............................ AAATAACCGGATTGAACCTTCCCGAATAACAC 3245889 28 100.0 32 NNNNNNNNNN ............................ TAATGCAATTATCATGAATAATACTATGCACT 3245949 28 100.0 32 NNNNNNNNNN ............................ ATTACGACAACATAGAAGGCATAACCACAAGG 3246009 28 100.0 32 NNNNNNNNNN ............................ TGTGCAGCTATTGGAGGCTTAGGGGCTAAGTT 3246069 28 100.0 32 NNNNNNNNNN ............................ GCTGCTTATATTGGCGGCGACCTTTAAGATTT 3246129 28 100.0 32 NNNNNNNNNN ............................ TTACAAAGCCTGCTGTATGCGTCTTTTAATAA 3246189 28 100.0 32 NNNNNNNNNN ............................ TTGATGTTCGTGCGCCCTATTCGCAGTTATTA 3246249 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 53 28 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [80.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [233,1427] Score: 0.18/0.18 # # Final direction: F [1.51,0.18 Confidence: HIGH] >NC_006369 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3246643 28 100.0 32 CGCCAGCTAA ............................ AGTACCACGGCACAAACACCGCCTGAAAGTTG 3246703 28 100.0 32 CTGAAAGTTG ............................ TACTACGTCCTTAGCTCTTAAGTCTTTTGTGC 3246763 28 100.0 32 TCTTTTGTGC ............................ TCTTGCGGCGCGTCTTTGTCTTCCATTAATTC 3246823 28 100.0 33 CCATTAATTC ............................ CAACAGACACGACAGGGTAGGGTTGCCCACAAA 3246884 28 100.0 32 TGCCCACAAA ............................ GCCATCATGATTACTAAAGTCGATTGTGACCC 3246944 28 100.0 32 ATTGTGACCC ............................ CAAAGTGTACGGAGATAGACCGCAAGACGACA 3247004 28 100.0 32 CAAGACGACA ............................ AATATAAAGCATCGGGAAAATGTAGACAAAAT 3247064 28 100.0 32 TAGACAAAAT ............................ AAATGCACGGCGCAAAAGTCAGAAAACAGCCT 3247124 28 100.0 32 AAAACAGCCT ............................ AGACAGAAATCCGGCTGGGCTAGAAATGATGA 3247184 28 100.0 32 GAAATGATGA ............................ TCTTGCCTGCTCTTAACTACAACTCCAGACCA 3247244 28 100.0 32 CTCCAGACCA ............................ AAACAACCACACCTCCCTTTTTAGTTAATCTA 3247304 28 100.0 33 AGTTAATCTA ............................ GATTCGATACATTTTTTAACTCGTCGCCCCAGT 3247365 28 96.4 TCGCCCCAGT ...........................G TTATTATGTT ========== ====== ====== ====== ========== ============================ 13 28 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [3749,311] Score: 0.18/0.18 # # Final direction: F [1.83,0 Confidence: HIGH] >NC_006361 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 4584019 29 93.1 31 AAAGAGCTAT -......................C..... TCCGCGAGGTCGAACCGGCCGCTGAACACCG 4584079 29 96.6 32 CTGAACACCG .....................T....... AAAGGCCACTACTTCGTCGGCGACCGGATCGG 4584140 29 100.0 32 ACCGGATCGG ............................. CAGCGGAGAAAGATGCCCCCGCCGCGTTGCAG 4584201 29 100.0 32 CGCGTTGCAG ............................. ACAGGGAGCGGACCGCTGCAGAGCTGCGGAAA 4584262 29 100.0 32 GCTGCGGAAA ............................. GCTGGTGATGAACGGCGGGATGGCCACGGCGA 4584323 29 100.0 32 GCCACGGCGA ............................. ACCACGATCCCCTGTGCCTGCCTACGCGCCTG 4584384 29 100.0 32 TACGCGCCTG ............................. CTCGCTCGTAGTACCCACCCACCCCCTGAGCC 4584445 29 100.0 32 CCCCTGAGCC ............................. GCGCCCTGCCCGCGCCTGGTTCCACGCCAGCA 4584506 29 100.0 CACGCCAGCA ............................. ACTTCCTGAC ========== ====== ====== ====== ========== ============================= 9 29 31 GGGCTCATCCCCGCACGCGCGGGGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [4,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [106,45] Score: 0.18/0.18 # # Final direction: R [0.55,0.68 Confidence: LOW] >NC_006361 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================== ====== 5289653 26 100.0 35 CAGGAAGTAC .......................... ACCTGCGGATCGACGTGCTGGGCATACCAGATAAC 5289714 26 100.0 35 ACCAGATAAC .......................... CTCCCGGTGCGGTCGCGGATCTCGGCCACAATGAC 5289775 26 100.0 35 CCACAATGAC .......................... CGGATCACCTTCGGCTCTTCGGTCATGATCCACAC 5289836 26 100.0 35 TGATCCACAC .......................... CGAGGAGGAGGGCGCCGGTGAATAACTGGGAATAT 5289897 26 100.0 35 CTGGGAATAT .......................... CCTGGTACCACGGCGGCTACCCCGGATTGGCCCAT 5289958 26 100.0 35 ATTGGCCCAT .......................... CCCGTGGTCGATCGCGTACTGCAACACCCGCCAGT 5290019 26 100.0 35 ACCCGCCAGT .......................... CCCGATCAGGCCGAGCAGGCTCGCCGCGAGCAGGT 5290080 26 100.0 35 GCGAGCAGGT .......................... CGCCGACCCGACCTGCGCCCAGTCCGGGGCGTCGT 5290141 26 100.0 35 GGGGCGTCGT .......................... TCACCCCGGCGACCCCCGCAGCGACGCCCTCGGGT 5290202 26 100.0 35 GCCCTCGGGT .......................... CACGGCAATACGGCATTGCGGTATTGCTGATTTGT 5290263 26 96.2 35 GCTGATTTGT ............T............. TGACTGTTCAGCGATCAGGATGTGGAACCGATGGT 5290324 26 96.2 AACCGATGGT ............T............. TTGGCTCTCG ========== ====== ====== ====== ========== ========================== 12 26 35 GCTCCCCGCGCACGCGGGGATGAGCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [3,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-6.00,-5.80] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [45.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [281,161] Score: 0/0.18 # # Final direction: F [0.64,0 Confidence: HIGH] >NC_006368 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 190034 37 100.0 34 NNNNNNNNNN ..................................... TAGATATAAAAAGATTAAATCTTCTAGCGCACAT 190105 37 100.0 34 NNNNNNNNNN ..................................... TCACTACTCCTGAAGGTTATAATTTTTGCTATAA 190176 37 100.0 36 NNNNNNNNNN ..................................... TTCGAATACAATCCTAGTGTCTCTGTGTGAATTAAG 190249 37 100.0 34 NNNNNNNNNN ..................................... CAGGCACTGGTTCACTAGACACTGTAACATCTAT 190320 37 100.0 35 NNNNNNNNNN ..................................... CAATAACAAGCGAGCCTTTTGTACTAGAAGGTTTA 190392 37 100.0 34 NNNNNNNNNN ..................................... CTACCAGTTAATCGTAACTCAATCTCTTTTTCAA 190463 37 100.0 34 NNNNNNNNNN ..................................... ATAGAATACATAAGTGCAAATTATTAAATGTTAC 190534 37 100.0 34 NNNNNNNNNN ..................................... TGAATGTAGAAACCAGATGCCACGAATTATTAGA 190605 37 100.0 35 NNNNNNNNNN ..................................... TTTGTATAAACGTTCTGATATGACTTAGGTAATCT 190677 37 100.0 34 NNNNNNNNNN ..................................... CTAACCTGATTGCTCAACAAATAATGCTATTGGC 190748 37 100.0 34 NNNNNNNNNN ..................................... TCACTTTAGGCCAACGCCGATCCTCCGCTTCGAA 190819 37 100.0 34 NNNNNNNNNN ..................................... TGACGCAAAGGATTTATTAAAAACGCCTTGTAAT 190890 37 100.0 31 NNNNNNNNNN ..................................... ATTTTACCTTTTAACACATATTGATAGGCGT 190958 37 100.0 36 NNNNNNNNNN ..................................... TCCATAACTGAAACGTCCTTATGCCTCAACATAATG 191031 37 100.0 34 NNNNNNNNNN ..................................... GAATTTGTCGGCCGCATAGACCGCTTTTATCAAA 191102 37 100.0 36 NNNNNNNNNN ..................................... CTATTGCAAGCTAGTTTGATCGTGTTATTATAAGAA 191175 37 100.0 36 NNNNNNNNNN ..................................... TGACAAACGTTTGTTTTTTAGACACAACACTAAAAG 191248 37 100.0 35 NNNNNNNNNN ..................................... CCTGAAAACCCGCCACAACCCGCGCCAGACTTGAA 191320 37 100.0 34 NNNNNNNNNN ..................................... ACCAAGTCGAAACAACATACCGAGACCGTGTTGA 191391 37 100.0 35 NNNNNNNNNN ..................................... TACATTGTTACGTTCATTTCACTCAGTTTTTCATA 191463 37 100.0 34 NNNNNNNNNN ..................................... AGCAATAACCCAAAGTTTCGCGCGCGTGCGCGGG 191534 37 100.0 37 NNNNNNNNNN ..................................... TTATAACATCGGGATGGCGGTTTATTGGTTAAGTAAC 191608 37 100.0 34 NNNNNNNNNN ..................................... TTCTTTTTTCAGATTTCATTTCCTTTTCCTTGTG 191679 37 100.0 35 NNNNNNNNNN ..................................... AATCTTAATTTATGCGCCTTACCTTCTGCTTCATC 191751 37 100.0 36 NNNNNNNNNN ..................................... TATACTTAGACAATATCATCATTTCCTATGTTTCGA 191824 37 100.0 36 NNNNNNNNNN ..................................... GCTATTCCAGATAGGTAGTTGTTTAGAGCATTTTGT 191897 37 100.0 35 NNNNNNNNNN ..................................... TTCGATACTCCTTAGCGGTACTTGCTAAAGTAGTT 191969 37 100.0 35 NNNNNNNNNN ..................................... AAATAATTCTTGTGACTCACGTGCCGCCATTTGAA 192041 37 100.0 36 NNNNNNNNNN ..................................... TAGGAATTGATTGGGGTAACGCCATCGCCATAGAAG 192114 37 100.0 33 NNNNNNNNNN ..................................... TTACTTCATGACCCGGACATTTTACTAAAAAAT 192184 37 100.0 34 NNNNNNNNNN T.................................... TCCTATACCTTGTCACAATTTCCTCATATGGCTC 192255 37 100.0 36 NNNNNNNNNN ..................................... CATAATTGGGAATTGGTGTGAAATGCTCACCGTCCG 192328 37 100.0 38 NNNNNNNNNN ..................................... TTAATTGCGCCAGAAACAGCACCATTTATGGTTACAGC 192403 37 100.0 1 NNNNNNNNNN .......................TT...T.A.....T NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 34 37 34 CCAATAATCCCTCATCTAAAAATCCAACCACTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.16%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [217,780] Score: 0.18/0.18 # # Final direction: F [0.41,0.18 Confidence: MEDIUM] >NC_006391 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================== ====== 20071 26 100.0 42 CTAGCACTCG .......................... AAACCCGCCAAGCACTCCGATACCGGGGATGCCTCCCCAACT 20139 26 100.0 40 CTCCCCAACT .......................... AAACGGCCGGCGCGTCGACGACGTCCTCTAGGAGGCTGAC 20205 26 100.0 39 GGAGGCTGAC .......................... TAACTACGCCGTGAGTTGGGCATCGGCGAAGCCCACAGT 20270 26 96.2 40 AGCCCACAGT .............G............ TAACCCGTGTGGTGGGACGGCGGTGTATGCAACGGACTAC 20336 26 92.3 40 AACGGACTAC .............G....C....... TAACTTCGACCAGGGATGGACCGACGAGCGCATCATGGAG 20402 26 96.2 40 CATCATGGAG .............G............ TAACTTGGCCGTGAGCCAATCCCAGTCATCCGTGTTAATC 20468 26 96.2 39 CGTGTTAATC .............G............ TAACTGGCATGGCAGGGATTCATCAATACCGGCTTTGTT 20533 26 96.2 41 CGGCTTTGTT .............G............ TAACTTGCTATCCGAGGGACGATGAGATGGCACGAGACCAT 20600 26 96.2 41 ACGAGACCAT .............G............ TAACTTGCTATCCGAGGGACGATGAGATGGCACGAGACCAT 20667 26 96.2 38 ACGAGACCAT .............G............ TAACCATCGCTGACGACGACTTCGATATCGGTGATTTG 20731 26 96.2 39 CGGTGATTTG .............G............ TAACTCCCAGTGTTCGCCGCGACTAACTGCTATCATGCC 20796 26 96.2 40 CTATCATGCC .............G............ TAACTTTCGCGGAGAACGCCGAAGGGAATCTCTTAGTCGA 20862 26 92.3 41 TCTTAGTCGA .............G....C....... TAACCAGCGCCGGGTTTGCGGTATGCTGATTGTTGCATGAG 20929 26 96.2 40 GTTGCATGAG .............G............ TAACCGGCATCGGCGAGCGCAAAGCCTACGCCGTGTGGTC 20995 26 96.2 39 CCGTGTGGTC .............G............ TAACCCAACGCTTGTCCGCCAACGGCGAACAGCCGGACG 21060 26 100.0 38 CAGCCGGACG .......................... AAACTCGGCGTGTTGTTCTCGGTATCGAGCGTCAGCTC 21124 26 100.0 41 GCGTCAGCTC .......................... AAACCATTGAACAGATGAATCAGGCCTGTGCTGACATGGTT 21191 26 100.0 41 TGACATGGTT .......................... AAACACGCTACGCTCGTGACTACATGGCGGAGTGCATGGAC 21258 26 100.0 40 GTGCATGGAC .......................... AAACCACTAAAGGAGGGCTGCGTAACCGCAGCCGCCCCCC 21324 26 100.0 40 GCCGCCCCCC .......................... AAACGATTTCTTTCAGCGCGTTCGTCTCGCTCGGATAGAC 21390 26 100.0 41 TCGGATAGAC .......................... AAACCGGCTGACTCCGGTGTGAGCGTGCACGCCCAGCCATC 21457 26 100.0 39 CCCAGCCATC .......................... AAACTGGATATCGTCAATCTGCGTTTCAAGGACTGGCTT 21522 26 100.0 39 GGACTGGCTT .......................... AAACCGATTTTTCACTGAGGGCAGCGAAGAGGTGATCGA 21587 26 100.0 40 AGGTGATCGA .......................... AAACCAAACCCTCCGACGCTGATGGTCGGCGCTTCTGCGG 21653 26 100.0 38 GCTTCTGCGG .......................... AAACCGGCAGCCATGAGGACAGCAGCCAGGAGACCAGC 21717 26 100.0 41 GGAGACCAGC .......................... AAACCGACAACGGCGAAGACTCGGACAACAATGAGTAAGAA 21784 26 100.0 40 TGAGTAAGAA .......................... AAACGGAGACGGACGCCACCGACACGGAGTCCGAGACGGA 21850 26 100.0 40 CCGAGACGGA .......................... AAACACCTGACATTGACTTCATCAAAGTCAACATCCACGG 21916 26 100.0 39 ACATCCACGG .......................... AAACTCGCGACGCTCGGACGGTGGTCGTGCATGAGTGAC 21981 26 100.0 40 CATGAGTGAC .......................... AAACCGTTCCTAATCGACATTGCCTGATGCAATTGTTCTT 22047 26 100.0 41 AATTGTTCTT .......................... AAACACATAGACACAGAGACGATAAATAATGCAGTGCGAGA 22114 26 100.0 39 CAGTGCGAGA .......................... AAACGAGGGGTTGTATGATGCAAATATCCGGGCCAAGGA 22179 26 100.0 39 GGGCCAAGGA .......................... AAACTGGCGTGACGACGAAGATAAAGACGTGTCTGGGAT 22244 26 100.0 40 TGTCTGGGAT .......................... AAACGGACGCCGACGTAGTGCTGCACCACATTGCTGAGGG 22310 26 100.0 40 TTGCTGAGGG .......................... AAACCGAACTCGAAATCTATCCGGAGTCCGATCAACGAGA 22376 26 100.0 41 ATCAACGAGA .......................... AAACGACCCGATGGCACAGTCACAGGCAGAGTGATATGCTG 22443 26 100.0 41 TGATATGCTG .......................... AAACTAGTGGACTGCCCGAGCCCGAGACATACAACGACTTA 22510 26 100.0 38 CAACGACTTA .......................... AAACCATCGGGTTGCACAACAGCAGGGTCAGAGGCTCT 22574 26 100.0 39 CAGAGGCTCT .......................... AAACTAGTCTTGATAGTGGGGCAACGTGCTCACGCATTT 22639 26 100.0 39 TCACGCATTT .......................... AAACACCGAGTTGATAGTTGACCCTCGATTGTCCAGTAC 22704 26 100.0 40 TGTCCAGTAC .......................... AAACGGATTTCGCGGCAGGAGTGTCTTTTACCTTATTATC 22770 26 100.0 38 CCTTATTATC .......................... AAACCGGCGATGCGGCGGTGGGCGTCCTGCCACATCCT 22834 26 100.0 41 GCCACATCCT .......................... AAACGATGGACAAAATCAAGCAGATTCGAGAAGCAAAGGCA 22901 26 100.0 40 AGCAAAGGCA .......................... AAACGACGCTGACTGTGCGACCAAAGTCCGACAGCTTCTC 22967 26 100.0 41 ACAGCTTCTC .......................... AAACCCACTACCTGTAACGGACATAAAGTAACTGTCAACCC 23034 26 100.0 38 CTGTCAACCC .......................... AAACCCGCCAACCAACTATGAGCCGACACGACCTCACA 23098 26 100.0 41 CGACCTCACA .......................... AAACCTTGAGCACGACCTTGTCGATGTTCCACCGGTTCCAC 23165 26 100.0 CCGGTTCCAC .......................... AAACCATGCCGGA ========== ====== ====== ====== ========== ========================== 48 26 39 GCTTCAACCCCACAAGGGTCCGTCTG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [5,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.60,-6.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [8,600] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_006392 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 46654 30 100.0 38 NNNNNNNNNN .............................. GTGGCACCGGTTGAGTCGCTGACCGCCGGCGCGTACGC 46722 30 100.0 35 NNNNNNNNNN .............................. CTGTAGGCCGCCAGCACGAGCACGGCCCAGAGCGG 46787 30 100.0 36 NNNNNNNNNN .............................. AGACCCTCCCCTCGTGGATGCACTCGGCACAGTAGC 46853 30 100.0 36 NNNNNNNNNN .............................. CGGCTCTGAGTATGAGGGAGTCCTGTTCAGCCAAGA 46919 30 100.0 37 NNNNNNNNNN .............................. GTGGTGAAGTCGCCCGCAGCGTATTCGAGCTTGTCCT 46986 30 100.0 36 NNNNNNNNNN .............................. CTGCGGCGGCTGTTTGAGTTGTACCTTTCGCTGGTC 47052 30 100.0 36 NNNNNNNNNN .............................. GACTGCCGGAACCAGAATACCGGCACAAAGTACGAG 47118 30 100.0 35 NNNNNNNNNN .............................. ATCGACTGCCCGAGAGACCCATGATTGCGAATAGT 47183 30 100.0 37 NNNNNNNNNN .............................. GCCGCAACGAAGCCCGGCAGGAACTGGGGCGTGACGA 47250 30 100.0 36 NNNNNNNNNN .............................. TCGAAGAGCGCGATCGGGGCGAGAGGTTTGACGTGC 47316 30 100.0 37 NNNNNNNNNN .............................. GCGTTGGTCGAGTTTGACCGTGCCGTAGATTGTCGCG 47383 30 100.0 35 NNNNNNNNNN .............................. TCCGAGACGATGCACGCGCTTGCCCAGCAGTTGTG 47448 30 100.0 36 NNNNNNNNNN .............................. GACCCACAGGAAACACTTTTCGCCTCACCAACTCTG 47514 30 100.0 36 NNNNNNNNNN .............................. AACCCACTCACGGCGGCGAAGGACGCGCTGACGATC 47580 30 100.0 36 NNNNNNNNNN .............................. GGCCGGCACGGCGTCACGCGAGAGATGTGTCCTTGC 47646 30 100.0 35 NNNNNNNNNN .............................. GGATCACGGTACAGATGCGGCGACAACTACGCGAA 47711 30 100.0 37 NNNNNNNNNN .............................. GGAAACATCTACGCGCGCACCAGCCTGCTCGGAAACT 47778 30 100.0 37 NNNNNNNNNN .............................. TGGTACTCCTCGCGCGTGGTGGGGTACGAGGCCGTCG 47845 30 100.0 36 NNNNNNNNNN .............................. CCCGACGGCGGCGACGGTATCCCGGAGGACAAGACC 47911 30 100.0 36 NNNNNNNNNN .............................. TGCCATATCCACGAGCCCTTTGACATCGCCGTCCTG 47977 30 100.0 35 NNNNNNNNNN .............................. GAGCAAGACGAGTGGCTCCAGTTCCCGACCGCCGC 48042 30 100.0 37 NNNNNNNNNN .............................. AAACAGCGCGAGGATATTGTTCAGGCCGTCGAACAGG 48109 30 100.0 36 NNNNNNNNNN .............................. TTCGACCGCTTCGGCGGCTGGGAATGGTCGTCGACT 48175 30 100.0 35 NNNNNNNNNN .............................. CTGATATGTACTGCTAAGAGGTCATCTCGGATACC 48240 30 100.0 37 NNNNNNNNNN .............................. GTACTCGTCACACCACGGGCACACGCCGTCGTCAATC 48307 30 100.0 36 NNNNNNNNNN .............................. CAGTGGGACGTGTTCGGCCATGCCGTAGATAGACAG 48373 30 100.0 36 NNNNNNNNNN .............................. TCTACTACCCTATCGACGACGCCGAAATTTCGCCCA 48439 30 100.0 35 NNNNNNNNNN .............................. TGGACGGCCTCCGCACTGTCCTCACCATCGTCCTC 48504 30 100.0 35 NNNNNNNNNN .............................. TTGATTGAACTATCCACGTCGCGTTTGTGTGCCTC 48569 30 100.0 34 NNNNNNNNNN .............................. ATGAGGTTGTTTGGGACACTGCTATTCGGCCGCG 48633 30 100.0 36 NNNNNNNNNN .............................. ATCGCCACACTCCCCAGCGCGGTCAGCAGCCCGACG 48699 30 100.0 36 NNNNNNNNNN .............................. AACGACCGGTACATGATTGAGTGGCGCGAGGGTCCG 48765 30 100.0 34 NNNNNNNNNN .............................. GACGGCGTCGACTGTGGGTCACTGTTACCGTCGC 48829 30 100.0 37 NNNNNNNNNN .............................. ATCCGCAGTGGGCCCGATGACATCTACGTGTATCCGG 48896 30 100.0 37 NNNNNNNNNN .............................. AAGAACGATATGGGTGTTAGGTCGCACCATTCGCAGA 48963 30 100.0 36 NNNNNNNNNN .............................. GACTACGTCTACCCCGAGGAGGAGGTGCGCGACTGG 49029 30 100.0 35 NNNNNNNNNN .............................. ACCATAGTACCATCATGGCACTCTGGACTTATAGT 49094 30 100.0 38 NNNNNNNNNN .............................. CTGGAGCGCATCGTAGTGCACGCCGCGGTCGTTCGCTC 49162 30 100.0 35 NNNNNNNNNN .............................. TCGACACCATCAACGGGTTGCTCGGCGACGGGACG 49227 30 100.0 36 NNNNNNNNNN .............................. CCCGCCCACTTGTTGCTCATGTAGACCTTTCCTGAC 49293 30 100.0 35 NNNNNNNNNN .............................. ACACTCTCGCACTCGATCCCGGACCTGCTGGGATC 49358 30 100.0 36 NNNNNNNNNN .............................. CCGTCGAAGGACCGCCTTGGGTGGTGTACTCGGCGG 49424 30 100.0 35 NNNNNNNNNN .............................. TTGCGGACCCGGCGGCGATGGACGACGATGTCGGC 49489 30 100.0 37 NNNNNNNNNN .............................. CATTAGCGAGATTAGCGGTATGGGTTCCATCATCCCA 49556 30 100.0 38 NNNNNNNNNN .............................. GAGGACAGCGTCTTTGTGGTCCGCCAGTTTGGACGGGT 49624 30 100.0 37 NNNNNNNNNN .............................. TGGACGAGCGCCCAGCCGTCCTTGTTGCTACGGAATA 49691 30 100.0 35 NNNNNNNNNN .............................. GAATTTGTTGACGACCCACGGGAGACCGACGATGC 49756 30 100.0 35 NNNNNNNNNN .............................. CACTTGCTCAATCAGGGACTGCGTTGGTATGGCCT 49821 30 100.0 36 NNNNNNNNNN .............................. AGCACATAGTCGATGCTCGGGTCGTGCCAGTGGCCG 49887 30 100.0 36 NNNNNNNNNN .............................. GTCGCCGACGACGACCCGTTCGTCCTTCCCGAAAGC 49953 30 100.0 34 NNNNNNNNNN .............................. ACCGCTATAACAATGAACATCCAATACTACGTTA 50017 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 52 30 35 GTTACAGACGGACCCTCGTGGGGTTGAAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [6,6] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 90% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-6.40,-4.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [51.7-15.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [106,16] Score: 0.18/0.18 # # Final direction: F [1.32,0 Confidence: HIGH] >NC_006371 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2187866 28 100.0 32 NNNNNNNNNN .C.......................... GGTGTTTTTCATAATGGCGGTGGAATACCAGA 2187926 28 100.0 32 NNNNNNNNNN ............................ TCGCTCTTTCCGTGGGTTGGGTAATGGTGATT 2187986 28 100.0 32 NNNNNNNNNN ............................ GCGATCCAGAAACAGAGTTGCAATCATCTGAA 2188046 28 100.0 32 NNNNNNNNNN ............................ CACATGAGCAACCAAGTCGGCGGTCAGATTCA 2188106 28 100.0 32 NNNNNNNNNN ............................ AAATAGTTACCAAGGTGAATGAAATCATTGCA 2188166 28 100.0 32 NNNNNNNNNN ............................ TTGAATATAGTCCGAAGTGGCTGTGTGTTTCA 2188226 28 100.0 32 NNNNNNNNNN ............................ AACTAGTTAGGGCTTGGTTGCGGTATTCAGTA 2188286 28 100.0 32 NNNNNNNNNN ............................ ATCAGAGATGATCGCACCGGTAACAAGAGATA 2188346 28 100.0 32 NNNNNNNNNN ............................ TCCCTCGCAATCTTAATACAGCAGTTCGAACA 2188406 28 100.0 32 NNNNNNNNNN ............................ TCTTAAATCAAATTGTTCGGGTTTCGTTTACT 2188466 28 100.0 33 NNNNNNNNNN ............................ ATCAATTGAAATCGATTCGACTTCTTACCTTAT 2188527 28 100.0 32 NNNNNNNNNN ............................ GTGCAGACGTAGCACCAGCATGCGCTACTTAT 2188587 28 100.0 32 NNNNNNNNNN ............................ TAGTCGCGCATGATTGCGGTGACTGATTCTCA 2188647 28 100.0 32 NNNNNNNNNN ............................ GTGTGAAGTAAGCAGCTTGTTCAGGACTAATA 2188707 28 100.0 32 NNNNNNNNNN ............................ GCCACCTGCAAACCCCGCCCCCCCGGCTAGAA 2188767 28 100.0 32 NNNNNNNNNN ............................ GTTCCTGATTATGGTGAGCGCGCCTTTATTGA 2188827 28 100.0 32 NNNNNNNNNN ............................ CTCGAGCTCAATGTGAAGCGGGTCTTACTGTT 2188887 28 100.0 32 NNNNNNNNNN ...........................G AAATTCACGTGCTTATGAACAACGGCAAAAAA 2188947 28 100.0 32 NNNNNNNNNN ............................ AATGCTATACACTCTCTTTGGCTTTTTCTACA 2189007 28 100.0 32 NNNNNNNNNN ............................ AATGATATAAATTGATATAGCCCGTTGTTACA 2189067 28 100.0 32 NNNNNNNNNN ............................ GTCATTTGCTGCGGTTATGCAGTCCCTCATAA 2189127 28 100.0 32 NNNNNNNNNN ............................ AACCCCGCAGTGGTACTTTTAATCTCAGATAA 2189187 28 100.0 32 NNNNNNNNNN ............................ TTGTAGCCGATACTGATCCCTGCCATATAAAA 2189247 28 100.0 32 NNNNNNNNNN ............................ CTTGAATGATGCCATGTTCATACCTGGCGTAA 2189307 28 100.0 32 NNNNNNNNNN ............................ GCCAGTTCTACGCCTTCACGTACCGCATCAAA 2189367 28 100.0 32 NNNNNNNNNN ............................ ACGAACGCGTGGTTGATGAATCGTTTGATTTT 2189427 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 27 28 32 TTTCTAAGCTGCCTGTGCGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [202,131] Score: 0/0.18 # # Final direction: R [0,1.42 Confidence: HIGH] >NC_006392 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1032 32 100.0 34 GACAAATATG ................................ CGCCCACTTGTTGCTCATGTAGACCTTTCCTGAC 1098 32 100.0 34 CTTTCCTGAC ................................ GTCCCCTCAAAGTCCAGTCCTTGCACACGACGGA 1164 32 96.9 33 ACACGACGGA ..............................T. CCACACGTTGTGGTTGTGGCCGTGGACATACAG 1229 32 93.8 GGACATACAG ..............................TG GCGGGACC ========== ====== ====== ====== ========== ================================ 4 32 33 GTTACAGACGGACCCTCGTGGGGTTGAAGCCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [6,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.60,-4.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [57,225] Score: 0.18/0.18 # # Final direction: F [1.05,0.18 Confidence: HIGH] >NC_006392 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 35013 30 100.0 37 ATCGGGCATG .............................. CTGTTCGGTGTCTTCGTGGGCGCGTGCGTCGGGATCG 35080 30 100.0 35 GTCGGGATCG .............................. AAATCCTTCGCCGCACTCTTTGCATAGATGCACTC 35145 30 100.0 35 AGATGCACTC .............................. GAGGGAGACGCCGACGACCAGGAGGCTATCCTGCC 35210 30 100.0 37 CTATCCTGCC .............................. CGAGCTCTTGCATGGTCAGAACAGAAAGTCGCGAACG 35277 30 100.0 37 GTCGCGAACG .............................. GACCCCCGCACTTTCGCAAGGGGCCGCTTAGTGTAAG 35344 30 100.0 39 TTAGTGTAAG .............................. TCAGACAGGAGTACCTCGCCGAGTTCCTCGACGACACGG 35413 30 100.0 37 GACGACACGG .............................. CGCGGGTCTGGCTCGATGGCGACGACATCGACATCAT 35480 30 100.0 37 TCGACATCAT .............................. AGTCGGAATGTGCGTCTTGCTCCCGTCGTCGTTGATG 35547 30 100.0 36 GTCGTTGATG .............................. GGCCAAGACCTCGCGGCGGAACTCACACAGTACGTC 35613 30 100.0 37 ACAGTACGTC .............................. GAAGTCCACCGTATCACTGGACCGCGAAGTTCGGAAA 35680 30 100.0 34 AGTTCGGAAA .............................. CGACTGAAAGAGTTGTGCGTGTCGAATCATGAGC 35744 30 100.0 37 AATCATGAGC .............................. CCCCGCCGGTACTGCGGGGGCTCCAGCGAGTCGTCTA 35811 30 100.0 37 GAGTCGTCTA .............................. CCCCGCCGGTACTGCGGGGGCTCCAGCGAGTCGTCTA 35878 30 100.0 37 GAGTCGTCTA .............................. GGCCCACCGAGTGCTTGTGACCAGCTGCGGCCACCGC 35945 30 100.0 36 CGGCCACCGC .............................. CATGCACGACGGCGACGTGTCGGTGCTCAACTGCCT 36011 30 100.0 36 TCAACTGCCT .............................. GCCAACACTAGTCACGTCAACAACAGTCCCAAACTG 36077 30 100.0 37 TCCCAAACTG .............................. CGACTGTCCACGGTATCGTTTATCCGCGCGTCAACGA 36144 30 100.0 38 GCGTCAACGA .............................. GATAGTCACATCAACACTGGTTGTGCCGTTATTGGTTA 36212 30 100.0 36 TTATTGGTTA .............................. CTGCCGTTGAAGGTCACTCGTATGTCGTCCACCAGA 36278 30 100.0 36 GTCCACCAGA .............................. CCGGTCGACCTGATTTACAACGTGACTGGCCACGAG 36344 30 100.0 35 TGGCCACGAG .............................. AGCCAAGCCATCAGGGGATCGTCCGCCGAACCCGT 36409 30 100.0 33 CCGAACCCGT .............................. CCGACGAACGGCCCGATTTGGCCGATCTCCCTG 36472 30 100.0 34 GATCTCCCTG .............................. ATCATCTGGGGGCCGGAAGTGTGGCTGACCGGCG 36536 30 96.7 CTGACCGGCG .............................C GACATCCTC ========== ====== ====== ====== ========== ============================== 24 30 36 GTTTCAGACGGACCCTTGGGCGGTTGAAGT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.00,-2.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [365,738] Score: 0.18/0.18 # # Final direction: R [0.68,0.92 Confidence: LOW] >NC_006448 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 629901 36 100.0 30 ATCATTTGAG .................................... GAGCTACCAGCTACCCCGTATGTCAGAGAG 629967 36 100.0 30 TGTCAGAGAG .................................... CGTTCCTTTTTTCAAGGTAATCTTTGAAAG 630033 36 100.0 30 TCTTTGAAAG .................................... AAGTCCGTAAGCACCAGTTCCAATCGTCAT 630099 36 100.0 30 CAATCGTCAT .................................... TTGAATACCAATGCCAGCTTCTTTTAAGGC 630165 36 100.0 30 CTTTTAAGGC .................................... AACCTCATACATGGGGAAAATTGGTAAGTA 630231 36 100.0 30 TTGGTAAGTA .................................... TAACTTCATTAGTGTAGTTGTAATTAGCAT 630297 36 100.0 30 TAATTAGCAT .................................... TTAGCTACCCAAATATCTTCTGTTTTCCAA 630363 36 100.0 30 TGTTTTCCAA .................................... GAGTTTTCAATATTGGCACAGGAGACAATT 630429 36 100.0 30 GGAGACAATT .................................... TGATACTATTTTAGTCAGATATGAAATATC 630495 36 100.0 31 ATGAAATATC .................................... TCATCAATGTTTAAAGCCCAACAATACATGA 630562 36 100.0 30 CAATACATGA .................................... TAGATTTAATCAGTAATGAGTTAGGCATAA 630628 36 100.0 30 TTAGGCATAA .................................... AGGAAAATAGCATGAGCGTACAACAATCTA 630694 36 100.0 30 CAACAATCTA .................................... TGTCTATCACGCTTCCTAAGTGCATGAAAA 630760 36 100.0 30 TGCATGAAAA .................................... ATGTCACCAATCACTAAAGAACCTACGCTG 630826 36 100.0 30 ACCTACGCTG .................................... AACATCTTCCTCTCCGATTGCAAATAGTGC 630892 36 100.0 29 CAAATAGTGC .................................... CATATTTGGTGCCCGTTCGATAAAGAGTA 630957 36 100.0 30 ATAAAGAGTA .................................... CATTAAATCGCTTGAAGCAGACATTGAAGC 631023 36 100.0 30 ACATTGAAGC .................................... GACTTATCTTGGAAGGTAGTGAAGGCACTT 631089 36 100.0 30 GAAGGCACTT .................................... TCCTTGCCATCTGCACTGTAAGCCCAAGCA 631155 36 100.0 30 AGCCCAAGCA .................................... TAGTACGCATAATCAATTCATCAAGCTTGA 631221 36 100.0 30 TCAAGCTTGA .................................... GTAGTGACCCAAAATTCTATGACCTTGAAA 631287 36 100.0 30 GACCTTGAAA .................................... AGATTGTGGTGCTTACGGAAAATTCCTTGT 631353 36 100.0 30 AATTCCTTGT .................................... TGGCAAGAAGTGTAAGAGATGCAATGGATA 631419 36 100.0 30 GCAATGGATA .................................... TTTATTATCATTATTCTTCTTCCCAAGCGT 631485 36 100.0 30 TCCCAAGCGT .................................... TTTTATAGAATTTGGTGGTGAACTTTTTCA 631551 36 100.0 29 AACTTTTTCA .................................... AATGGGTCACAGATTGCCATAATAAGGAG 631616 36 100.0 30 TAATAAGGAG .................................... CCGAGGTCACTTTAGAACCCACAAAATAAG 631682 36 100.0 30 ACAAAATAAG .................................... ATGAGAGAACACAGTATAGACCCTGATACA 631748 36 100.0 30 CCCTGATACA .................................... CAGTATTAATGAGGTTTGGGTGGTCATTCC 631814 36 100.0 31 TGGTCATTCC .................................... CCATACTCTCTATCAGTTCATTTAATTCTTC 631881 36 100.0 30 TTAATTCTTC .................................... TAATATGTCGCTCTACTGATTCCAAAACGG 631947 36 100.0 30 TCCAAAACGG .................................... ATGAATTACATTCATGATTTTATCGAGTTT 632013 36 100.0 29 TATCGAGTTT .................................... CGTGCCATTGTTTCGGTCGGACGTGGGCA 632078 36 94.4 GACGTGGGCA ..................................GT TTGATTCA ========== ====== ====== ====== ========== ==================================== 34 36 29 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:69.44%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [64,43] Score: 0/0.18 # # Final direction: F [0.41,0.37 Confidence: LOW] >NC_006396 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 1128074 19 100.0 47 NNNNNNNNNN ..........A........ CTGACATCACCAGACAGTTGACCCGACACCACCATACAAGTGTTCTA 1128140 19 100.0 45 NNNNNNNNNN T...........G...... TCCAGTTCGACTACAGCCAGACCAGAATGGTGAACACGTGTTCAC 1128204 19 100.0 36 NNNNNNNNNN ................... CGCACGGAAGGTGTGCAAGCGTCTGAATCTACGAAA 1128259 19 100.0 36 NNNNNNNNNN .......G........... TTTGTGGCGTTGTTCCGAGTTCCGATTCGCCCTTGC 1128314 19 100.0 36 NNNNNNNNNN ........G.......... TCACGTACTGCTTGAGGTGTGTGAGAGTATGCTGAG 1128369 19 100.0 42 NNNNNNNNNN ................... CCAAAAGGCCGTTTTGGGCGGTTTTCCCGTCGGATCGGGTTC 1128430 19 100.0 42 NNNNNNNNNN ................... TTCGAAACGGAATACGTAGGGTCGTGGTGGAACCGGACGGAC 1128491 19 100.0 1 NNNNNNNNNN .....GGT........... NNNNNNNNNN ========== ====== ====== ====== ========== =================== 8 19 40 ACACCACCCTGCAAGTGTT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [50.0-46.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [215,181] Score: 0/0.18 # # Final direction: F [0.78,0 Confidence: HIGH] >NC_006448 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 863999 36 100.0 36 AAGATATGGG .................................... GCTTTCTAGCTCGCTATAATTACCCATTCCTAGAAA 864071 36 100.0 35 TTCCTAGAAA .................................... TTTGAATAGTCTTTGAATCGCATTTGAACCATATA 864142 36 100.0 38 GAACCATATA .................................... AGGTTTTTTGCCATAGATTTTCCAAGACCTTCCCAACT 864216 36 100.0 CTTCCCAACT .................................... GCTTTCTAGC ========== ====== ====== ====== ========== ==================================== 4 36 36 GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [102,204] Score: 0/0.18 # # Final direction: F [0.37,0.27 Confidence: LOW] >NC_006461 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 872101 36 100.0 35 NNNNNNNNNN .................................... TCGTAAGCGATAACGGGGAGGGCGACGCCAATCGC 872172 36 100.0 41 NNNNNNNNNN .................................... GCCACGGCGTACGCCGCCGCCCAGAGGGCCTTCTGGTTCAG 872249 36 100.0 39 NNNNNNNNNN .................................... TTTGCGAGGATTACCCCCTCGGTGGGCCCGAGGAGGTTC 872324 36 100.0 39 NNNNNNNNNN .................................... CACGTCCCTCACGACCGAGGCCAGGGACGTCTTCACGTG 872399 36 100.0 38 NNNNNNNNNN .................................... CTCCCTCCTTTCCCGCCTATCTTACTCCCCCATGAGGT 872473 36 100.0 42 NNNNNNNNNN .................................... ACTTCAAAGTGAAGGAGCCTAGGGGCTTGGTCATAGACTGGC 872551 36 100.0 39 NNNNNNNNNN .................................... GGCGAGGAGCCGCCGCACCCCGATGATCTTGCCGTCGGA 872626 36 100.0 40 NNNNNNNNNN .................................... CATTGGCGTGGGTGCCACCCCGCCTACGCCGATGCTACGG 872702 36 100.0 43 NNNNNNNNNN .................................... TTTGCCCTTCTAGGGCCTTCTGGAGTTCGTGAAGGTTCGCCAC 872781 36 100.0 40 NNNNNNNNNN .................................... CTTCAGGAATGGGCACGCCCACCTGCCGGAGAAGTTCAAT 872857 36 100.0 41 NNNNNNNNNN .................................... CTAAGCAGGAGGAGGCCCACGGCCTGGTAGAGGCCAAAATA 872934 36 100.0 42 NNNNNNNNNN .................................... ATCTCTAACCAGGCTACGGAGAGGATAGTGGAACTCTACCGG 873012 36 100.0 39 NNNNNNNNNN .................................... TATCAAGGGTCTTCCGCAAGCGGAAGGCGCGCGGGGAGT 873087 36 100.0 41 NNNNNNNNNN .................................... CAGCCCGCTCCATCTCGGCCAGCTCTAGGGCGTGGGGACCA 873164 36 100.0 1 NNNNNNNNNN ................................AT.. NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 15 36 39 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.00,-7.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [35.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [469,13] Score: 0.18/0.18 # # Final direction: F [1.33,0.27 Confidence: HIGH] >NC_006449 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 625101 36 100.0 30 NNNNNNNNNN .................................... AGAACGTATTCCAAAACCTCTTTACGATTA 625167 36 100.0 30 NNNNNNNNNN .................................... TTAACTGTTATCAAAATGATAAGATAGTCT 625233 36 100.0 30 NNNNNNNNNN .................................... CGTTGATGTTTATTCAAGTAAAATAATTAA 625299 36 100.0 30 NNNNNNNNNN .................................... TCCTTTCACGGGTAGCACACTAACATACAC 625365 36 100.0 30 NNNNNNNNNN .................................... GTTGGCAATGCAAACAACCTTTATGAACCG 625431 36 100.0 30 NNNNNNNNNN .................................... TTTATTTCCTTGCGATAACGTTCCACCTTT 625497 36 100.0 30 NNNNNNNNNN .................................... AGATTATAAGGAACACAACCAACTATATAG 625563 36 100.0 30 NNNNNNNNNN .................................... ACGACATCAAGCTGATTGTCTTCTACATAA 625629 36 100.0 30 NNNNNNNNNN .................................... TTTGGAATACTGAATGTTTTACTGAAAATC 625695 36 100.0 30 NNNNNNNNNN .................................... ACACCACTATCTTTTCCTCCTGAAAATGAA 625761 36 100.0 30 NNNNNNNNNN .................................... GTAATTCCACGAAATTATCAACCTTATGCA 625827 36 100.0 29 NNNNNNNNNN .................................... TTGGAGGATTGCCCCATATTCCCAAGAGT 625892 36 100.0 30 NNNNNNNNNN .................................... GAGAGGCGTTAAATATAGAAATGCAAGATT 625958 36 100.0 30 NNNNNNNNNN .................................... TTTTAACGTCATCAGTCCACCGCCTTAAAT 626024 36 100.0 30 NNNNNNNNNN .................................... CACCTCTTTCGATGGAAAGGTATCCTTCTA 626090 36 100.0 30 NNNNNNNNNN .................................... GACCAAAGTTTGATTATAGAGCTATACACC 626156 36 100.0 30 NNNNNNNNNN .................................... ACCATCATTCTTACCATTACAACTGTAATG 626222 36 100.0 30 NNNNNNNNNN .................................... ATACGAATTCGGTTCGCACAATTACAATTC 626288 36 100.0 32 NNNNNNNNNN .................................... TATCAACGCAATCATTACAACAACTTCAAACA 626356 36 100.0 30 NNNNNNNNNN .................................... ATCTACGTGTCAATACATATCACAAAACAG 626422 36 100.0 29 NNNNNNNNNN .................................... ATTTTTAGAAATTTCTGATATAATAATGA 626487 36 100.0 30 NNNNNNNNNN .................................... TTGTTGGAACAAGGACGACTTGGTAAACTA 626553 36 100.0 30 NNNNNNNNNN .................................... CATATTAAGCTGACTGGGCCTAATGCTTTT 626619 36 100.0 30 NNNNNNNNNN .................................... TTCATAGCATACCGTAGTTGTAAAATCTAT 626685 36 100.0 30 NNNNNNNNNN .................................... AACATTTAGGGAATGAAATTGATAAGACTG 626751 36 100.0 30 NNNNNNNNNN .................................... AACATGAGAAACTGTAGAAAACAAGCAATA 626817 36 100.0 31 NNNNNNNNNN .................................... TGGTGAAGATGGCAGTCATAAATGGCACATT 626884 36 100.0 30 NNNNNNNNNN .................................... AAGGGTTGAAAAATGTTGGTATATCAAACG 626950 36 100.0 30 NNNNNNNNNN .................................... TTCTGGTAGTGGATTTAGTCAAACAGATGT 627016 36 100.0 30 NNNNNNNNNN .................................... TCCATAGAGCGTCTTAAACAAAGAATAGTC 627082 36 100.0 30 NNNNNNNNNN .................................... GTTGGCAATGCAAACAACCTTTATGAACCG 627148 36 100.0 30 NNNNNNNNNN .................................... CATATTAAGCTGACTGGGCCTAATGCTTTT 627214 36 100.0 30 NNNNNNNNNN .................................... TTCATAGCATACCGTAGTTGTAAAATCTAT 627280 36 100.0 30 NNNNNNNNNN .................................... AACATTTAGGGAATGAAATTGATAAGACTG 627346 36 100.0 30 NNNNNNNNNN .................................... AACATGAGAAACTGTAGAAAACAAGCAATA 627412 36 100.0 31 NNNNNNNNNN .................................... TGGTGAAGATGGCAGTCATAAATGGCACATT 627479 36 100.0 30 NNNNNNNNNN .................................... TTATGATTGAATGACATGGTTGTATAAGTA 627545 36 100.0 30 NNNNNNNNNN .................................... TTTCTTTAGGAATACCAGGGAGTTCAGCTT 627611 36 100.0 30 NNNNNNNNNN .................................... TGGCAGAGATTACACAGCAACGGAAACAGC 627677 36 100.0 30 NNNNNNNNNN .................................... GGGTATCATTGTATCTAGTGATGGACCTGA 627743 36 100.0 30 NNNNNNNNNN .................................... ATTTGAAAAATGCACAACAGCGTTTGATAG 627809 36 100.0 1 NNNNNNNNNN .........T........................GT NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 42 36 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:69.44%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [65,43] Score: 0/0.18 # # Final direction: F [0.41,0.37 Confidence: LOW] >NC_006461 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 874397 36 100.0 40 GTCTTCTCCA .................................... CACCTCACCTCCACTCGCTTATCACGCGCCTCCACCAATG 874473 36 100.0 41 TCCACCAATG .................................... GGGGTCATAGATCCAGTCCCTAGGCGGGCCGAGGCGAATCC 874550 36 100.0 40 AGGCGAATCC .................................... TTGCTGATTGTGAATGATGCCCATTCCTCCTTAGAAGGAA 874626 36 100.0 TTAGAAGGAA .................................... GCTCGTCACGGGAAGCGCAAAAAGGTAGCTCCTAAGG ========== ====== ====== ====== ========== ==================================== 4 36 40 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.00,-7.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [234,262] Score: 0/0.18 # # Final direction: F [0.74,0 Confidence: HIGH] >NC_006462 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 144129 36 100.0 41 GGGGGGTACC .................................... CGGAGGGGCCCCCTTCTCCCCCCGGGGCGGCATTTTCCCGG 144206 36 100.0 42 ATTTTCCCGG .................................... TCCCGAGGCCCGGTAGTGGGCCGTTGACCTCGGGCGCCTCCG 144284 36 100.0 37 GGCGCCTCCG .................................... GACCTTGAGGAGGGCTCCGAGTCTTTTCAGGGCGGGT 144357 36 100.0 38 CAGGGCGGGT .................................... AACCCTCCGCGCCATCGCCTCCCGCCTCTACCACCTCT 144431 36 97.2 40 TACCACCTCT ...................T................ CCGTAGATAAGGCGCCCGGGGACGACCACGTCAAGGCGCA 144507 36 100.0 38 TCAAGGCGCA .................................... CGGGGATGTAGTCCCCGGAGCTAGCCGGGGGAGGACCT 144581 36 100.0 42 GGGAGGACCT .................................... GGTGCGAGGGGGTGGACCGCTAGTTGCGCCTCTATTCAAGAT 144659 36 100.0 37 TATTCAAGAT .................................... CCGGGAAGGCCGTGGGCTCGGGCACCGCCGCCCCGAG 144732 36 100.0 CCGCCCCGAG .................................... CACAGAGCGGCCCTTTGGGGTGGGTTAGAAGAAGAAGAA ========== ====== ====== ====== ========== ==================================== 9 36 39 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.00,-7.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [144,88] Score: 0/0.18 # # Final direction: F [0.74,0.27 Confidence: MEDIUM] >NC_006462 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 135156 36 100.0 39 GTATGGCATG .................................... TGCTCTAATCGGGCCTGTTCGGCTATGGCCTTGGGGCTC 135231 36 100.0 40 CTTGGGGCTC .................................... ACAACCCGCCCAAAGGGAATGCCGCTAGCCCCAGACACAT 135307 36 100.0 36 CCAGACACAT .................................... CAGTCCCACCCCTCGTGGGGGGCGGCCCTGTCGTCG 135379 36 100.0 39 CCTGTCGTCG .................................... CGCACCCTCCTTCCGAGCTTCCACCCGGCGTACATGGCC 135454 36 100.0 39 GTACATGGCC .................................... TTCAGCAGACCGAAGTGTCTTCCGTTGCGAACAGTGTAG 135529 36 100.0 42 AACAGTGTAG .................................... CCTCATCAGCGCATCTAGAGCCTGAATTATCCTCATTTCTTC 135607 36 100.0 40 TCATTTCTTC .................................... GCCATCACCGTGAGGCCGCCCTCCACCAGCTCCCCCTCCA 135683 36 100.0 40 TCCCCCTCCA .................................... TTTCTTAATTACGAGCCAGTCATTCGGATAAACCATGAGA 135759 36 100.0 39 AACCATGAGA .................................... TGAAAGTTTCGGTGGTCCCCCCCGCCCTCCACCAGCGGA 135834 36 100.0 40 CACCAGCGGA .................................... CCGCAGCTGGGGCAAGTGCAACCGCAGTAGCTCATACTCC 135910 36 100.0 40 CTCATACTCC .................................... TTGGCGGTCAGGGTTTGGTACCGCACCGTGTTCGGCGTTA 135986 36 100.0 42 TTCGGCGTTA .................................... TTCTTGATTATCCTGACCTTGTCCTTCATCTTTGACCTCCTT 136064 36 97.2 TGACCTCCTT ..................................C. TCGCGGGG ========== ====== ====== ====== ========== ==================================== 13 36 39 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.00,-7.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [238,359] Score: 0/0.18 # # Final direction: F [1.15,0 Confidence: HIGH] >NC_006462 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 189509 29 93.1 32 AAGGGGGTCC --........................... TCGTCCGCAAGCTCGTCGGGCACCTCCTCCGG 189570 29 96.6 33 CCTCCTCCGG .................T........... GCCGGAGGCCCGGCCCGGAGGGGTCGTAAGACC 189632 29 96.6 33 TCGTAAGACC ...............C............. GCCCCCGCGGGAGCGGCGCGCCTTGCTAGAGGA 189694 29 100.0 32 TGCTAGAGGA ............................. GACCGCTTCACGTCCCGGAGTCGTGTCAGGGG 189755 29 100.0 31 GTGTCAGGGG ............................. TTGCCATTACTATTACTACCGGCAACATCGC 189815 29 100.0 32 GCAACATCGC ............................. GGCGTGGCCGGAGGGGGTGCCGAATGGCTAAG 189876 29 100.0 32 AATGGCTAAG ............................. GTGGAGGTCTACGCCGGGAACCGATTTTTCAC 189937 29 100.0 33 GATTTTTCAC ............................. GGCCCGGAGCATGGCCTGCAGGACGGCGGAGGG 189999 29 100.0 33 CGGCGGAGGG ............................. GGCCCGGGTCCTGGGCCACGGCTGGGCTAAAGG 190061 29 100.0 32 GGGCTAAAGG ............................. CGGAGGAGCCACAGGTAGGCCGCCCGGGCCAG 190122 29 100.0 32 CCCGGGCCAG ............................. CCGAGTGGGTCGTCCGCCTCGTTGAGTACCCT 190183 29 100.0 33 TGAGTACCCT ............................. GAGGCGCTGCTGAGCCCCAAGGCACTACGGCCC 190245 29 100.0 33 ACTACGGCCC ............................. GCCTCCACACCAGGCCACCAGGTCTGCGGCCCC 190307 29 100.0 32 CTGCGGCCCC ............................. CCCTCTTGTTCTCTCTGGCCGCCCAACGAGGT 190368 29 100.0 33 CCAACGAGGT ............................. CACCCCCTTGGCCTTGGGCTTATAGCGCTAACC 190430 29 100.0 33 AGCGCTAACC ............................. GCTCGCAAGCTTGAGGATAAACTGGATAGGGCC 190492 29 100.0 32 GGATAGGGCC ............................. CCTAGCCTCCTGTGACGGGTGGGGGCTGTCAG 190553 29 100.0 33 GGGCTGTCAG ............................. GGTGGAGAATCAGCCCGTTGAGGAGGTTGCCTA 190615 29 100.0 33 AGGTTGCCTA ............................. TAGACAAAGGTCGTCTTATATTCTGCGTCCGGC 190677 29 100.0 32 TGCGTCCGGC ............................. TTGCAGATAGGCGATGTTGGCGGCGATGACCT 190738 29 100.0 32 GCGATGACCT ............................. GGAGTGGCGGCCGCGAAGCGGGCCAGGTCTAC 190799 29 100.0 32 CCAGGTCTAC ............................. AGAGAGCTCGTAAAGGGCCCCGGCCAAATCGT 190860 29 100.0 32 GCCAAATCGT ............................. GCGGGTCACCTCGGAGTAGGAGCGGGTGGCGT 190921 29 100.0 CGGGTGGCGT ............................. ACATGACCAG ========== ====== ====== ====== ========== ============================= 24 29 32 CGGTCCATCCCCACGTGCGTGGGGACTAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [30.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [63,190] Score: 0.18/0.18 # # Final direction: R [0,1.23 Confidence: HIGH] >NC_006511 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2906514 29 100.0 32 GCGCGATCCC ............................. TGTTCGAGTTGCGCCGGTGATTTGAAATCTTC 2906575 29 100.0 32 TGAAATCTTC ............................. GATGGCCTGTTTTTCAACGAAAGAGAAGAATT 2906636 29 100.0 GAGAAGAATT ............................. ACTAAACGTA ========== ====== ====== ====== ========== ============================= 3 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [26.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1044,298] Score: 0.18/0.18 # # Final direction: R [0.18,1.51 Confidence: HIGH] >NC_006462 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 200811 31 100.0 30 CTGGTCATGT ............................... TGGCCTGCAGGACCTCCAGCATCTGGCGGG 200872 31 100.0 31 ATCTGGCGGG ............................... CCTAGACTCGGGCTATCCCGCCATCAGCGGC 200934 31 96.8 30 CATCAGCGGC .............................C. AGCGGATGGCGTCCTCATAGCGCATGCGCA 200995 31 100.0 CGCATGCGCA ............................... AACCCCAGGG ========== ====== ====== ====== ========== =============================== 4 31 30 GTAGTCCCCACGCGTGTGGGGATGGACCGGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [41.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [62,1058] Score: 0.18/0.18 # # Final direction: F [0.68,0.55 Confidence: LOW] >NC_006511 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2889571 29 93.1 32 GGTGAAACGT --........................... GAATCATTCTGTCACGAACAATTATATTTTCT 2889632 29 100.0 32 TATATTTTCT ............................. GACATTTGACACTATGCGCGATGATGCAATCG 2889693 29 100.0 32 GATGCAATCG ............................. CTCATTACGATGTGACGCAATACCGTGCTGTC 2889754 29 100.0 32 CCGTGCTGTC ............................. AGCATTTTCTTTGCTGGCCCCCATTTGGTGTA 2889815 29 100.0 32 ATTTGGTGTA ............................. ACGTAGCCGGTACAACTGACGCAGTAGACGTG 2889876 29 100.0 AGTAGACGTG ............................. TCTAAATCTA ========== ====== ====== ====== ========== ============================= 6 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1315,84] Score: 0.18/0.18 # # Final direction: R [0.18,1.92 Confidence: HIGH] >NC_006510 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 354866 30 100.0 38 NNNNNNNNNN .............................T CTCAATTAGCTCTTGAATTTTACAACACTACAAAAGAC 354934 30 100.0 38 NNNNNNNNNN .............................. CTTGCACGCGACAAAAGGAAGCCCAACGCCGATCATTC 355002 30 100.0 38 NNNNNNNNNN .............................. TTTCTAATGATTCCATTCCCTTTCGCATTTAAGAAAGT 355070 30 100.0 38 NNNNNNNNNN .............................. ATTTCTTTGCAGCAAAGGTCTGCCGGAGTGGGAGGAAA 355138 30 100.0 36 NNNNNNNNNN .............................. TCAACGGCCGAAGCACAAATCGAATTGCAAGCTGAC 355204 30 100.0 34 NNNNNNNNNN .............................. CACATTCTTGTGACATTTCTTCTTTGATCCACTC 355268 30 100.0 34 NNNNNNNNNN .............................. GCTCGAGATTTTCGATATGGTCAATCAAGTTCAT 355332 30 100.0 36 NNNNNNNNNN .............................. ACCTTTAGCTCCTTCGCTGTGTCTCGGAAATTTGTC 355398 30 100.0 37 NNNNNNNNNN .............................. CCGTTTGACCTTTATAATATTTTGGCTGTTATCAATG 355465 30 100.0 1 NNNNNNNNNN ................C............. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 10 30 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.80,-0.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [56.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [202,77] Score: 0.18/0.18 # # Final direction: F [5.82,0 Confidence: HIGH] >NC_006462 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 227396 36 97.2 40 TTCATCCTAT .........................A.......... TCCCAAGGGGGGGCTTCACCCCGCGAACAACGCACTCGCC 227472 36 100.0 36 CGCACTCGCC .................................... GGGGCTCACCCCCCAACCCCATACCCCCCCGGATGG 227544 36 100.0 37 CCCCGGATGG .................................... GGAGTCCGGCGATGAGGGCGTAGAAGCGCCCATTCCT 227617 36 100.0 36 GCCCATTCCT .................................... GCGGATAGGGCATAGCGATAGGGTGGCCGTAGTGGG 227689 36 100.0 36 CCGTAGTGGG .................................... GGGTACATCACATGGGCGGACGTGGTGAAGAGGAGG 227761 36 100.0 39 GAAGAGGAGG .................................... CCAAAAGACCAAAAGGGCGATAAGGATGCTTATCACTCA 227836 36 100.0 36 TTATCACTCA .................................... CAGGAGGGCCGCCGGGGAGTAGCTGGGCTGGGCCCG 227908 36 100.0 36 GCTGGGCCCG .................................... GCTGGTGGACGAGCTGGCTGAGGGGCTTCCCAAGCC 227980 36 100.0 36 TTCCCAAGCC .................................... GGAGGCCCCCCTGGACTGGAGAGAGGGGTATCGGCT 228052 36 100.0 37 GGTATCGGCT .................................... GTGGCAGCGGTGCCAGATTGACAACGTGGACTACAAC 228125 36 100.0 41 GGACTACAAC .................................... AGGATTAGGTTGTGCTGTTCAGCCTCCCTTTCCACAACCCA 228202 36 100.0 CCACAACCCA .................................... GGCCCCCTCC ========== ====== ====== ====== ========== ==================================== 12 36 37 GTTTCAATCCTCTACGAGGCTGACGGGGTTTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [7,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-3.80,-3.80] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [48.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [294,241] Score: 0/0.18 # # Final direction: R [0.27,5.28 Confidence: HIGH] >NC_006462 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 201119 29 100.0 33 CATTTCCCAC ............................. GCCATCCCGAAGCCGTGCGGGTTGCCTTCCCAC 201181 29 100.0 32 GCCTTCCCAC ............................. CTATCTTTCGCGAACTACCGGGCTTGGGCCGC 201242 29 100.0 32 CTTGGGCCGC ............................. TAGGCCATCGTGTCTAGGGAGGGGTTAGACCC 201303 29 100.0 33 GGTTAGACCC ............................. GACGGTAGACCCCGAGACCGGGGAAATCCTGGA 201365 29 100.0 32 AAATCCTGGA ............................. GAAAGCCCGAACTCATGGCGGACCGCGAACAC 201426 29 100.0 33 CCGCGAACAC ............................. TGCCCCTCTGGCGGCCTAAGGAGGGTCATAAGC 201488 29 96.6 34 GGTCATAAGC ............................A GACGACATCCTTAGCGCCCTCCTCATGGCCCTAC 201551 29 100.0 32 ATGGCCCTAC ............................. GTTCCGGCCTCCACCCTCCGGTACGCGGAGAA 201612 29 100.0 33 ACGCGGAGAA ............................. ACCATGAGCGGCGAGTTAGGGTGCGAAATCGGG 201674 29 100.0 33 CGAAATCGGG ............................. GAGGCTCGCGGAGAAGGCCGCCACCTGCTCCCC 201736 29 100.0 33 CCTGCTCCCC ............................. TCCGACCCGCGCCGCCTCCTCTCTCTCTCCCTG 201798 29 100.0 33 TCTCTCCCTG ............................. ACTCGGGAGCCAAGACGTAGGTGGAGAACCGCC 201860 29 100.0 34 GAGAACCGCC ............................. GACATGACCCCCGAGCAGCGCCGCGCCCTCAAGC 201923 29 100.0 34 GCCCTCAAGC ............................. GTGGAGTCTTCCCCTTCCTCTTCTGGCCCCCAGC 201986 29 100.0 GGCCCCCAGC ............................. AGCTCCCGCT ========== ====== ====== ====== ========== ============================= 15 29 32 GTAGTCCCCACGCGTGTGGGGATGGACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [370,69] Score: 0.18/0.18 # # Final direction: R [0.18,0.37 Confidence: MEDIUM] >NC_006526 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1242955 28 100.0 32 NNNNNNNNNN ............................ TAGCAGTGCCAGTGCTATCAAGAAAGAAATCC 1243015 28 100.0 33 NNNNNNNNNN ............................ AGATGGAACAAATGTGTGGTGGGAAAATACTTT 1243076 28 100.0 32 NNNNNNNNNN ............................ CCGTGCGTCATAGACACCGGAAGGTGCGCCGT 1243136 28 100.0 32 NNNNNNNNNN ............................ TTCTCAAAAAGGAAAAGAAATTGGAACAGATT 1243196 28 100.0 32 NNNNNNNNNN ............................ GTCGAATAATTTTAAGCGTGAACCCGTATCAG 1243256 28 100.0 33 NNNNNNNNNN ............................ ATCGAACTGCGTGCCTGATAGCCGATACGCTGA 1243317 28 100.0 34 NNNNNNNNNN ............................ GATCGCGGGCAACGGTTTATTCAGCTATCCGCGC 1243379 28 100.0 32 NNNNNNNNNN ............................ ATTTCGTCAGTGTCCGGAGAAACGCCCGTCAG 1243439 28 100.0 1 NNNNNNNNNN ............G.......T.GCTT.G NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 9 28 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [558,93] Score: 0.18/0.18 # # Final direction: F [1.83,0 Confidence: HIGH] >NC_006510 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1983796 30 100.0 37 CGTTATCCAA .............................. GAGGCGCTTTCGGGCTTCTCCGATATAATGTCGCAGA 1983863 30 100.0 38 ATGTCGCAGA .............................. CGATAAAACAAAGGAGGAGATAGCATGTTTGCAATCTT 1983931 30 100.0 37 TTGCAATCTT .............................. GGCTGAAACGATTGAACCGGCTGAAACGGCGGAACCG 1983998 30 100.0 35 GGCGGAACCG .............................. TCGTTCGTTACGCGGAAGACGCCAGCGTATTTTTT 1984063 30 100.0 CGTATTTTTT .............................. TAAAAGTATC ========== ====== ====== ====== ========== ============================== 5 30 36 GTTTCAATCCCTCATAGGTACGATAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [390,139] Score: 0.18/0.18 # # Final direction: R [0.18,5.14 Confidence: HIGH] >NC_006510 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 3279485 32 96.9 34 GCGAGAGAAT -............................... TTATCTACAGTCGGGAACAACCTCCGCGATGTTG 3279551 32 96.9 36 CGCGATGTTG .T.............................. TCACACCCTTCCGACGTCTGGCGGGCCGCAGGAAAT 3279619 32 100.0 34 CGCAGGAAAT ................................ ACGAGCCGAGCGGTTCGGGCCGCACTTTTGGAAA 3279685 32 100.0 CTTTTGGAAA ................................ CCCAGAAAGCA ========== ====== ====== ====== ========== ================================ 4 32 34 GAGTTTCAATCCCTCATAGGTACGATAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.50%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [403,373] Score: 0/0.18 # # Final direction: R [0,5.55 Confidence: HIGH] >NC_006526 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1590356 28 100.0 32 ATTTACTCTA ............................ GCGCATCTTCTGATGCTTTTTTAGCTGCGGCC 1590416 28 100.0 32 AGCTGCGGCC ............................ TTGACGCTGTGAGCGTGACGATATGCTTTCAC 1590476 28 100.0 33 ATGCTTTCAC ............................ ATCGGGGCATAAAATAGCGACTTGCTCACCGAT 1590537 28 100.0 32 GCTCACCGAT ............................ GTCTGGCTGAAATGAGGTCCGACGATTTGCAT 1590597 28 100.0 33 CGATTTGCAT ............................ ACCCCTCTTGGTAGTCGTATCTGCAGACGCAAT 1590658 28 100.0 CAGACGCAAT ............................ ATATAGAAGAT ========== ====== ====== ====== ========== ============================ 6 28 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [70.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [476,642] Score: 0/0.18 # # Final direction: F [1.51,0 Confidence: HIGH] >NC_006513 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1941465 37 97.3 35 TCAAATGATA ............A........................ GGCTGCGCCTCGTCGGCGAGCAGGGTCCGGAACTG 1941537 37 100.0 35 TCCGGAACTG ..................................... ACCAAGATCAAGACGATCGGCAAGCTGCTGGACGA 1941609 37 100.0 34 TGCTGGACGA ..................................... CGTCGCAAAAGAGGACGACAACGGGCTGTACGTC 1941680 37 100.0 37 GCTGTACGTC ..................................... CAAGCGCGAGTTTTACCGGAGGTACGGCAGCGAAGCG 1941754 37 100.0 36 CAGCGAAGCG ..................................... GGTTCGGGTGGTTAGGCATCTCAGCGGTTGGCCGAA 1941827 37 100.0 38 GTTGGCCGAA ..................................... CGATCAGTTCGGCGGGGGGTTCATCCGCGAACTAGAGC 1941902 37 100.0 35 GAACTAGAGC ..................................... TTCCTGAGCTTCCCTCCCACACGCTTACGCACGTA 1941974 37 100.0 34 TACGCACGTA ..................................... TGTTGACGCAGTCCCACTGCACGCCATGCAGCAC 1942045 37 100.0 36 CATGCAGCAC ..................................... ATGTTCCCCGAGGGGCAGGTGGTCAAGTTCGACCTC 1942118 37 100.0 36 GTTCGACCTC ..................................... CTCACGGATGTCGCGGTAGTCGAACACCGGCAGGGG 1942191 37 100.0 35 CCGGCAGGGG ..................................... TCAATGCCGGCTGGGACAACCGCGGCGAACAGCTT 1942263 37 100.0 34 CGAACAGCTT ..................................... GCTGGAACGCCTACCAGCAGATCAAGGACAACCT 1942334 37 100.0 34 AGGACAACCT ..................................... ATCGTTCGAGTTCGTTCTGCGGCGTAGTCATATT 1942405 37 100.0 39 TAGTCATATT ..................................... CAAGCTGGCGCCCGCCTCTTTGCGCCTCAAGTCGCAAAT 1942481 37 100.0 37 AGTCGCAAAT ..................................... CTGAGTGATGGCTGACAAAGACAAGAACGAATACCTT 1942555 37 100.0 35 CGAATACCTT ..................................... CATGCACACGGTATTCACGGCATCCTCCCTGTCTC 1942627 37 100.0 33 TCCCTGTCTC ..................................... GCGGCAGGCCGGGCGGTGCGCATCGTCGAGCGG 1942697 37 100.0 36 CGTCGAGCGG ..................................... GTCCTGAACCCGGCTGACTGGGCGACGATGGAAACG 1942770 37 100.0 36 GATGGAAACG ..................................... CGGCGGCAGCAGTAAAAAGTCGAGCACGAATACGAC 1942843 37 100.0 35 CGAATACGAC ..................................... GGCTGCCTCGCCGCGGTGAAGCAGGCGATCAGGGA 1942915 37 100.0 35 CGATCAGGGA ..................................... CCGGACTGCGACGGAAAGGGGCGGACTGAGAAGAT 1942987 37 100.0 35 CTGAGAAGAT ..................................... CGCGGATCAGCTTGATGTAGGCGTCGGTCCATCCC 1943059 37 100.0 34 GGTCCATCCC ..................................... GCGCCCGGCGAGCTTCGCCGACGCGGCGAACTTC 1943130 37 100.0 36 GGCGAACTTC ..................................... CACGGTCACCAATGCCGGCGTTGCCGGGTAACCACT 1943203 37 100.0 35 GGTAACCACT ..................................... CGCGAGGCTAAGGCGTATCTCGGCGTGCAGGACGT 1943275 37 100.0 35 TGCAGGACGT ..................................... CTTGGCGCTTACGCCGTGATCGTGATTGCCGTCAT 1943347 37 100.0 34 TTGCCGTCAT ..................................... GTGGGATCGGGCGCTCGACGACCTGCAACTGATG 1943418 37 100.0 35 GCAACTGATG ..................................... GCGTCGGTCCATCCGGCGTCGGCGAGCACGAGCTT 1943490 37 100.0 35 GCACGAGCTT ..................................... CACGTGAGTTGTGCGTCGAGTTCGCTTGGCAGGTT 1943562 37 100.0 34 TTGGCAGGTT ..................................... CCGGCAGATCGCCGAGCACCGCGCCAAGCTCGAA 1943633 37 100.0 35 CAAGCTCGAA ..................................... ATTAGTTGCACCGACGCGAGCGCCGAGTCGACGTA 1943705 37 100.0 34 AGTCGACGTA ..................................... ACGGCGACCCGCTGCGGCCGGACCTCGATTACCT 1943776 37 100.0 35 TCGATTACCT ..................................... TTCGAGCAGTCCGGACGACACGCACGACCAGACCG 1943848 37 100.0 35 GACCAGACCG ..................................... ATGCGAGCGCCAGCGCCTTCACGGCCGAAGACGCC 1943920 37 100.0 44 CGAAGACGCC ..................................... TCGACTGCCGAGCACCAGGCGCTGAAGACCGCCCACGACAAGCT 1944001 37 100.0 35 ACGACAAGCT ..................................... CCCGAGATCCTCGCCGCGGACCTGATCGTCAGCCA 1944073 37 100.0 36 TCGTCAGCCA ..................................... GGCTGCCCCGTGAGCGTGAAAACCTCGATCCATGCC 1944146 37 100.0 35 GATCCATGCC ..................................... CTCGCCAGGGCGCGACCGGCCGCCGTGCTCATGTC 1944218 37 100.0 34 TGCTCATGTC ..................................... CTTCGCCGGTGCCTACCAGCGCGACGACACAGGC 1944289 37 100.0 36 CGACACAGGC ..................................... CATGGCGAGGCGCGCCGCAGCGGGGTCGATGTCGGG 1944362 37 100.0 34 CGATGTCGGG ..................................... GGGTGAGCGCGTCGGCGATGAAAATCGACTCGGG 1944433 37 100.0 35 TCGACTCGGG ..................................... CGCACCTGTTCGTTCCAACCCCTCATGACCCACCT 1944505 37 100.0 35 TGACCCACCT ..................................... CGTTCGACTTGATGACCGACGCCGCTTATCACGGC 1944577 37 100.0 34 TTATCACGGC ..................................... CGTCACCACGGTCACGCTCGACCCGGTGCTGCGC 1944648 37 100.0 36 GGTGCTGCGC ..................................... GCCCCACACTTGCCCGGCGAGCGCGACGGCCGTATC 1944721 37 100.0 34 CGGCCGTATC ..................................... CGGCGCTGCGCGATGCGTGCTGCGAACTCGCGCT 1944792 37 100.0 35 AACTCGCGCT ..................................... GCCGCAATCCGCAACGGTGCGGAGAACGTCACCGA 1944864 37 100.0 34 ACGTCACCGA ..................................... CGCTCGGCGCTCACGCCTCACCCTCGATCGGCGC 1944935 37 100.0 36 CGATCGGCGC ..................................... GATGGCCCGACGCGTCGGGTGCGGCACGCTGTCGAT 1945008 37 100.0 35 CGCTGTCGAT ..................................... ACGATCGTCGGCCACGACAACCACGGCAACTACAC 1945080 37 100.0 36 GCAACTACAC ..................................... GAAGCCTTTTTGCGGGTCGTGGTTGTACTTGCGCGC 1945153 37 100.0 35 ACTTGCGCGC ..................................... GCGGCGTGGTCGTGGGCGGGAGGGTTCGGTCAGGC 1945225 37 100.0 35 TCGGTCAGGC ..................................... TTCAGCTTCTCGGCCTGCTCATAGAGATAGGTGTC 1945297 37 100.0 34 GATAGGTGTC ..................................... GCTGGCGACGGGTCGGTGGGAAGGGGGATCACAT 1945368 37 100.0 35 GGGATCACAT ..................................... GTGGCTGGGGCGGATTTTTTGCGGCTGTTGAGAGC 1945440 37 100.0 35 TGTTGAGAGC ..................................... ACAGTGATCGCCTGCACGTCGACGAAGGTTTTGTT 1945512 37 100.0 34 AGGTTTTGTT ..................................... GATCCAGGAGGCAGTTGAGGTCTGGATAGAGGGC 1945583 37 100.0 35 GATAGAGGGC ..................................... CGGAATTGGAGCGATCAGCACCGTAGCGCCCGACA 1945655 37 100.0 35 GCGCCCGACA ..................................... TGGACCAAGATTGGCGGGGGCGATTCGGTTCGGCG 1945727 37 100.0 34 CGGTTCGGCG ..................................... GGTCATCAAGGCGGTGGTGCACCGGCAGATCGAG 1945798 37 100.0 36 GCAGATCGAG ..................................... CAGGCGACGATTGATGCCGCAGACGCAGCCCAACAG 1945871 37 100.0 36 AGCCCAACAG ..................................... GCGCACCGATTCCGCGGTCGTCTTGCTGATCGACGC 1945944 37 100.0 35 TGATCGACGC ..................................... CGATTCTCGGCTGCCTCAAGTTGCGCGGGGCTAAG 1946016 37 100.0 34 CGGGGCTAAG ..................................... CCCGGACGTACTGGCTCAGCGGCGCACGGTCGAC 1946087 37 100.0 35 CACGGTCGAC ..................................... GGGCATGAGCGACGCCGAGTGGGATTACCTGTACC 1946159 37 100.0 35 TACCTGTACC ..................................... GGCTCGTCCATGTCCATGCACAGGACGATGTCGGA 1946231 37 100.0 36 CGATGTCGGA ..................................... GGTGAGGTCCAGGATGTGCCGCACGTTGCGCGGTGC 1946304 37 100.0 34 TGCGCGGTGC ..................................... TCTCGTCCGTGGTGTCGAGCCGGTACAGCAAGAG 1946375 37 100.0 39 ACAGCAAGAG ..................................... CGCATCAAAACGGCGCTGCTGTCGCGGCTGTCGGAAATC 1946451 37 100.0 34 GTCGGAAATC ..................................... TCGATAAGTACGACAAGGCGACGAAGCAGCGCAA 1946522 37 100.0 34 AGCAGCGCAA ..................................... GCATCTTTGTTACCACTAAGAGCGAGGACAGAAA 1946593 37 100.0 37 AGGACAGAAA ..................................... GGCTCTGCATGTGCGAGGACTGCGCTCCGTCGTTCGA 1946667 37 100.0 35 CGTCGTTCGA ..................................... GGCGCCGAATGGTCGCCTACACCGCCGACTGGATC 1946739 37 100.0 34 CGACTGGATC ..................................... GATGCTGCCCAGTGAAGAGACAAGCGCGACCGAG 1946810 37 100.0 34 CGCGACCGAG ..................................... TGAGGTTCAGACTGCTGACCGAGTCCTGTGCGTG 1946881 37 100.0 CCTGTGCGTG ..................................... TCCCGTCGAA ========== ====== ====== ====== ========== ===================================== 76 37 35 GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [6,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-11.30,-17.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [383,87] Score: 0.18/0.18 # # Final direction: R [0.18,5.28 Confidence: HIGH] >NC_006513 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1948501 37 100.0 36 TGCTAGACCT ..................................... GGATATGACCTTCGGCTCGATGGTCGGATTCATGGT 1948574 37 100.0 35 GATTCATGGT ..................................... ATGATGTTGTCCTTGTTCATGGTCGGCGACTTATT 1948646 37 100.0 34 GCGACTTATT ..................................... CCTCCTGGTGCGGGAGCAGGTCAGTTGTCGTCGC 1948717 37 100.0 34 TTGTCGTCGC ..................................... GAGGAGAGATCGCCGGCTGCATCCCCATCAACGA 1948788 37 100.0 34 CCATCAACGA ..................................... TCCCCACGATCTTGCCCATGCACTCGTTCTGGCT 1948859 37 100.0 36 CGTTCTGGCT ..................................... CCGCCCCCACTGCCGCACCGCCTCGACGAATTCGCC 1948932 37 100.0 34 CGAATTCGCC ..................................... GGCGTCATCGCCTTGCTCGGTAGCGAACAAAAGC 1949003 37 100.0 36 GAACAAAAGC ..................................... GAACCCGGTCACGGGGACGATCCGCTGGTCATCGTC 1949076 37 100.0 34 GGTCATCGTC ..................................... GATCGAGTGCGTGTTCCGCTACCGCACGCGGACT 1949147 37 100.0 34 CACGCGGACT ..................................... GGCGAACGTTTCCGCCTGCAGGGTCATATCGGAG 1949218 37 100.0 36 CATATCGGAG ..................................... ACTCTCCGGCACGGCGATCGATTGGGCCGCCAACGC 1949291 37 100.0 35 CCGCCAACGC ..................................... CGCACGATCAATGGCGTGAGCTTCAACGGCACGGC 1949363 37 100.0 35 ACGGCACGGC ..................................... TAGGTCGGGTTGCCGGCGTGACCGATGCGGAACCA 1949435 37 100.0 34 TGCGGAACCA ..................................... CCGACTACGCCGGAGCGTGGCAAGCGCTCGGAAC 1949506 37 100.0 33 CGCTCGGAAC ..................................... GTCGATTTCTGCCACCTCAACGGGCTCACCGGT 1949576 37 100.0 34 GCTCACCGGT ..................................... GCAGCGTGATCAGCCGACACGCTGGGTCGTCAAT 1949647 37 100.0 34 GGTCGTCAAT ..................................... GGTCGACGAGTTCGGTGTCAGCCATCTCCTGGCT 1949718 37 100.0 34 TCTCCTGGCT ..................................... ATAGCAGTCTCTATGCCGACGTACTGGTCAATCT 1949789 37 100.0 34 TGGTCAATCT ..................................... CAGCGATGCCGCACTTCAGCATGCTGTCGAGCAC 1949860 37 100.0 34 TGTCGAGCAC ..................................... AAAGGCCGGCACCTCAACCACCGCGCCCCAGGCA 1949931 37 100.0 36 GCCCCAGGCA ..................................... CGCCAGCCCGTCGTCGAATACATCGAGGTCGAATGA 1950004 37 100.0 35 GGTCGAATGA ..................................... CAGAGCGCGACGGATGCGACTTCGGGCCGATTACT 1950076 37 100.0 34 GCCGATTACT ..................................... GTTGAGTTGGGCGCGAGCATTAGGGATTTGTGAT 1950147 37 100.0 34 GATTTGTGAT ..................................... GTTTTGTGGATGCGCAGCATTGCTTGCTGCCCAT 1950218 37 100.0 35 TGCTGCCCAT ..................................... TGGTTTCCCGCCTTCACGTCTGCCAGGAATTTAGA 1950290 37 100.0 34 GGAATTTAGA ..................................... TCAGCACGCCGATCGGCATGTCCTCCGTCGGATA 1950361 37 100.0 34 CCGTCGGATA ..................................... GGACTGCAAGGCGATGCTGCTGCGCGCCGGCATC 1950432 37 100.0 CGCCGGCATC ..................................... CAGGAACTG ========== ====== ====== ====== ========== ===================================== 28 37 34 GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [6,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-11.30,-17.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [38.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [141,121] Score: 0/0.18 # # Final direction: R [0,5.14 Confidence: HIGH] >NC_006513 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1952604 37 100.0 37 GACATGGATG ..................................... CAGCGAGGGCGGGCTGGTGGTGTTTGCGGAAACCGAG 1952678 37 100.0 34 GGAAACCGAG ..................................... CGCATCTCGTGCCCGCAGAGCGTGCAGCGGAGCA 1952749 37 100.0 35 CAGCGGAGCA ..................................... GTCGGCGACTGCCTGGCCATCACCATGCAGGCGAT 1952821 37 100.0 35 TGCAGGCGAT ..................................... AACGCGACCTTGAACAGCGCGAAGCCCTTGCGATG 1952893 37 100.0 35 CCTTGCGATG ..................................... AACGACTTGTTCGCGGCGATCCGCTGCGTCTCGAT 1952965 37 100.0 34 GCGTCTCGAT ..................................... CAACCACTGGCACCGACGGAGGGCCGCACAAGAT 1953036 37 100.0 34 CGCACAAGAT ..................................... GCAATCCGATCGTCGATCGGGCCACGGGAGAGGT 1953107 37 100.0 35 CGGGAGAGGT ..................................... CTCGGCGCGGCCGGCGGCTACTACAAGCACCTGAT 1953179 37 100.0 35 AGCACCTGAT ..................................... TCTTGCAGATGTGCACGGTCGAGGTCGAACGTGTC 1953251 37 100.0 36 CGAACGTGTC ..................................... GATTGAGTCGGCGGGGTGGATAAGCCACACTAACTA 1953324 37 100.0 35 ACACTAACTA ..................................... GGATGGGATCGATATTGGTGCAGGGTGGCCTGCGT 1953396 37 100.0 34 TGGCCTGCGT ..................................... TTCGGCGTGGCATGGCAACTAAAGCGCGTACTGG 1953467 37 100.0 35 CGCGTACTGG ..................................... GCGGCGTTGTTGCCGATCGTCTTCGTTACGTTCTG 1953539 37 100.0 TTACGTTCTG ..................................... TCTTCGCACG ========== ====== ====== ====== ========== ===================================== 14 37 34 GTTTCAATCCACGCCCCCCGTCACCGAGGGGCGATGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [6,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-11.30,-17.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [153,86] Score: 0/0.18 # # Final direction: R [0,4.87 Confidence: HIGH] >NC_006526 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 113843 28 96.4 32 GTAGTGTAAA ..............G............. GTTTGCTGCCATAAAATGCTCCTGCCGTGCAA 113903 28 100.0 32 TGCCGTGCAA ............................ TGAAAAAGGGTGACCCTATCAAAGTAGGGGCT 113963 28 100.0 32 AGTAGGGGCT ............................ CAAAACTGTCATATCGTAGCTAATATCTTCAC 114023 28 100.0 32 ATATCTTCAC ............................ ACAGCTAAAACCCTTTTACCTTTACTGTCGGC 114083 28 100.0 32 TACTGTCGGC ............................ TGAAAAAGGGTGACCCTATCAAAGTAGGGGCT 114143 28 100.0 AGTAGGGGCT ............................ TAGAAGAGAT ========== ====== ====== ====== ========== ============================ 6 28 32 TTTCTAAGCTGCCTATGCGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [658,424] Score: 0/0.18 # # Final direction: R [0,1.42 Confidence: HIGH] >NC_006530 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 9589 35 100.0 19 NNNNNNNNNN ................................... CTTCCGCAGGAGACCGCTC 9643 35 100.0 31 NNNNNNNNNN ................................... CTTCCGCATAAGTCCGCTGATGAGACCGCTC 9709 35 100.0 1 NNNNNNNNNN ................................... NNNNNNNNNN ========== ====== ====== ====== ========== =================================== 3 35 25 AAACCCTTGATACAAGCGGAAATGTGAAAATCACA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [53.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [1235,687] Score: 0/0.18 # # Final direction: R [0,0.64 Confidence: HIGH] >NC_006582 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 3668576 32 100.0 35 CGATGCATTT ................................ TTATTGTATCTCGAAAAAACCGCGGACTCATTTCC 3668643 32 100.0 35 ACTCATTTCC ................................ GGCCCATCGAGATACAGGCGCGAGTCATTGCGATT 3668710 32 100.0 33 CATTGCGATT ................................ AAAGGAGCTGGTATAGATGGGGATTCCAGTAGA 3668775 32 100.0 35 TTCCAGTAGA ................................ TTAAAAAGTTTGCTGGCTTCTTGCCAATTTCAAGC 3668842 32 100.0 34 AATTTCAAGC ................................ CTACCGTCTTGCTGTTTTTCCAATCCTGACTTTT 3668908 32 100.0 33 CCTGACTTTT ................................ TTAATAGATGCTTTAGTATAATTTGTACTTTTT 3668973 32 100.0 35 TGTACTTTTT ................................ TGAAGCGGCGCATCAGGCGTTATTAAAAGAGGCAA 3669040 32 100.0 36 AAAGAGGCAA ................................ TTGATCGAACACTTGAGATATTTACGTTGGGTAGCT 3669108 32 100.0 34 TTGGGTAGCT ................................ TCTGTGTATACTGAAATTCAACAAGCAAATTCTC 3669174 32 100.0 34 GCAAATTCTC ................................ AAGGCGATTGACTATTACCTGGGAGAGTCAACCG 3669240 32 100.0 GAGTCAACCG ................................ AGCGACTTTC ========== ====== ====== ====== ========== ================================ 11 32 34 ATTTCAATCCACGCACTCACAAAGAGTGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.12%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.60,-3.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [291,189] Score: 0/0.18 # # Final direction: R [0,5.14 Confidence: HIGH] >NC_006582 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 3728825 20 100.0 48 CCGGAAGCAA .................... TAAGAGTGCGACGTTGCTGTTTGGAACACATGAAGTTATCGTTCTTTC 3728893 20 100.0 46 TCGTTCTTTC .................... TAAGAGTGCGGCGAGGGGCAAAGCTGTGGGTAGCCCAAATTCCTGA 3728959 20 100.0 46 AAATTCCTGA .................... TAAGAGTGCGACTGGGTCTTTTGTCAAACGTCCAACTAAATTTACT 3729025 20 100.0 47 TAAATTTACT .................... TAAGAGTGCGACGATTTAGAACGCGAAAAGGTGCCGGGGCGGGTAAG 3729092 20 100.0 46 GGCGGGTAAG .................... ATAGAGTGCGACGGAGGGGCGTCATAATACTGCCACCAACTACGAT 3729158 20 100.0 46 CAACTACGAT .................... ATAGAGTGCGACAGCAAACGCAAGTCTAGACCCTATTCGTCGTTTA 3729224 20 100.0 49 TCGTCGTTTA .................... ATAGAGTGCGACAATATCCTTGATGGACTACAGGCACAGATTGACGAGT 3729293 20 100.0 47 ATTGACGAGT .................... ATAGAGTGCGACCACTCCCCTGTGGTTTTATCTTTGTAACGTAAGCG 3729360 20 100.0 45 AACGTAAGCG .................... ATAGAGTGCGACATTAACAGCGTGAGAACTGTTGGTAAGCCAACA 3729425 20 100.0 45 TAAGCCAACA .................... ATAGAGTGCGACGCGAGGATTTCAAGCGGGAATTAAATCCACTGT 3729490 20 100.0 AATCCACTGT .................... ATAGAGTGCGA ========== ====== ====== ====== ========== ==================== 11 20 46 ATTTCAATCCACGCACTCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [48.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [183,423] Score: 0.18/0.18 # # Final direction: R [0,4.95 Confidence: HIGH] >NC_006582 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 3739183 32 100.0 35 NNNNNNNNNN ..CGATTGG....................... ATCAAATTTCCGTCGAAACTCTGAACTCGTCCTGC 3739250 32 100.0 35 NNNNNNNNNN ................................ TGATTGGTAGTGGATTTTATCGAGCGTCTAGCGGA 3739317 32 100.0 34 NNNNNNNNNN ................................ TCTATGTTTCTTTCTCTCACTTCGTCATTCATAG 3739383 32 100.0 35 NNNNNNNNNN ................................ GTCATCTTGGATGAGGATGGACAAGTGGTTGTTCA 3739450 32 100.0 34 NNNNNNNNNN ................................ TCTGTTAATTCATGCTGAGAAGAAACAAGTAATG 3739516 32 100.0 34 NNNNNNNNNN ................................ AGGACTACACAAAGGCGATCTTAACGTTGATCGA 3739582 32 100.0 36 NNNNNNNNNN ................................ ACCGTTGAAGCGCCTGAACCGCCTGAACCGCCTCCT 3739650 32 100.0 33 NNNNNNNNNN ................................ TAGAGGCATCGCGAACAGTGTCGCCTCTACAAT 3739715 32 100.0 36 NNNNNNNNNN ................................ TTCTAGGCATCATCATAGTGGCCAACATTGTGGACA 3739783 32 100.0 35 NNNNNNNNNN ................................ AAAACGCATTGCGTGGTCATTTTGTGCAGGCATAT 3739850 32 100.0 35 NNNNNNNNNN ................................ AAAGCCTAGTATCTCTTCCGCCTCAGAACGTAAGA 3739917 32 100.0 34 NNNNNNNNNN ................................ TCAAGCCTGTATTCCTGTGGGTACATCATTAGGT 3739983 32 100.0 33 NNNNNNNNNN ................................ TAATGATAGGCAATTGCTTCATTACGCAAAAGA 3740048 32 100.0 36 NNNNNNNNNN ................................ GATGACCGCTTTACCACACAAGAGGGTATCGATGCA 3740116 32 100.0 34 NNNNNNNNNN ................................ AAGGGGGCAAAAGACGCGATTGATGGATTAGGCG 3740182 32 100.0 35 NNNNNNNNNN ................................ TGCTGCAGTTGAGTAAATACACAATATTTGGGGCG 3740249 32 100.0 34 NNNNNNNNNN ................................ GGCCATTTCAAGAAATTGTACAAATACCATGAGG 3740315 32 100.0 1 NNNNNNNNNN ................................ NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 18 32 34 ATTTCAATCCACGCACTCATATAGAGTGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.25%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.60,-3.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [422,233] Score: 0/0.18 # # Final direction: R [0,5.55 Confidence: HIGH] >NC_006582 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 3741106 32 96.9 35 AGTGCTTAAA .......T........................ ACATCGATCCAAAATCCTTCAAGACTTATAAAAGG 3741173 32 100.0 35 TTATAAAAGG ................................ TGACGTATGAAATACGCAGCACGTTCGCCACAAAA 3741240 32 100.0 34 CGCCACAAAA ................................ TTTGGCTTCTGCTTTAGTCTTAAAACCGCGTTTT 3741306 32 100.0 35 ACCGCGTTTT ................................ CATAATAAGACGTAAGACATGCGGTGTCTCGTCGA 3741373 32 100.0 34 GTCTCGTCGA ................................ CAGCTTTTCGAATGATACAGTAGTCAAGACCCAC 3741439 32 100.0 35 CAAGACCCAC ................................ GGTACCGTCTTCTATTCCATTAGCGCATAATTCAG 3741506 32 96.9 34 CATAATTCAG .......T........................ CAAAAAGTGGATTGTCTTTGTCTTTGTCTGAGTA 3741572 32 96.9 TGTCTGAGTA .......T........................ AGCGGAAATC ========== ====== ====== ====== ========== ================================ 8 32 34 ATTTCAACCCACGCACTCACGAAGAGTGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [10,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.60,-4.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [116,184] Score: 0/0.18 # # Final direction: R [0.37,1.05 Confidence: MEDIUM] >NC_006834 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 888612 31 100.0 34 GACGCGTCAT ............................... GGCCAGCCTGCGCTGACACCGACCCCGGGCACTC 888677 31 100.0 34 CCGGGCACTC ............................... TCTGCGACGGGGTTACCAGCTCCAGCCCGTCGCG 888742 31 100.0 36 GCCCGTCGCG ............................... GGTATCCCAGCAAAGACTTGCTCATACCCGTCGGGC 888809 31 100.0 34 CCCGTCGGGC ............................... GGCGGACAACATTGTGGGTCTTCCGGGATGCGGT 888874 31 100.0 35 GGGATGCGGT ............................... CCGTCAATCTGCTCGCCGTTGAACACCGTCGCAAA 888940 31 100.0 34 CCGTCGCAAA ............................... TCGCACCGACAGCGCCCTGATTGAGTATGTGCAG 889005 31 100.0 36 GTATGTGCAG ............................... GTGGCGCGAGCGCTATAACAAGCGCTCGTTCTACGT 889072 31 100.0 33 CGTTCTACGT ............................... CGCTTCACGGGCCGTGGATACGTTACTACCCAT 889136 31 100.0 35 TACTACCCAT ............................... TTGGATCGAACCGGAGGAACGCGCCTTGAGGTCGG 889202 31 100.0 35 TTGAGGTCGG ............................... GTCATCGCCGCTTGGCTCTTCGAGCTAGTCAGCTT 889268 31 100.0 34 TAGTCAGCTT ............................... GCGGTCGTTTCGCCTGCGACTCGACGTGGGCCAC 889333 31 100.0 34 CGTGGGCCAC ............................... CAGCAGCGTGCCCGCGCCGTTCCGCGTATAGAAC 889398 31 100.0 35 CGTATAGAAC ............................... ATGAGCATCCAGGTCGTCCCGCTCGCCCCGCGCCC 889464 31 100.0 35 CCCCGCGCCC ............................... GACAGCGGCGCGCAAGTCACGAACGTCAGCATCCA 889530 31 100.0 34 TCAGCATCCA ............................... CGGGAGCGGTGTGTACTGCGCCGATACTCCGCGC 889595 31 100.0 33 TACTCCGCGC ............................... CGGCGCTACGTCCTGGCCTGCTGCATCGATGGC 889659 31 100.0 36 CATCGATGGC ............................... CAGCACAGCCGACAACGCCTGTTCCAGCACCATCAC 889726 31 100.0 35 GCACCATCAC ............................... TTGCTTGCTGATCTGCGCATGCGCGCTCATGAAAT 889792 31 100.0 36 CTCATGAAAT ............................... CTTAGAGCACCTTCCAGACCGCCACTACGGGCAAGA 889859 31 100.0 34 ACGGGCAAGA ............................... GCCCACCTCTTGTCCACCGTGCGTGCTGCGCCAG 889924 31 100.0 35 GCTGCGCCAG ............................... TTGGGGTCGGCGCGATCTTTGGTGAAGTAGTGCAC 889990 31 100.0 34 AGTAGTGCAC ............................... CCGGACGTAGCAACTACGGCCGCTATAGCGCGTG 890055 31 100.0 34 ATAGCGCGTG ............................... GGAGTTGTGCGAAATGTCAGGCTTGGGCAAGCGC 890120 31 100.0 35 GGGCAAGCGC ............................... CGGCCGGCTTGTCCAGTGATCGTGGTGGAGTTGTC 890186 31 100.0 35 TGGAGTTGTC ............................... CAGTCCTGCATACGCCCATTGTCGAATTGCGCCTC 890252 31 100.0 34 ATTGCGCCTC ............................... GGTCGGCGGCGGCGAGCGCCGTTCAGGTGGTAGC 890317 31 100.0 37 AGGTGGTAGC ............................... GTTCCCGCGGTGGGTGTATGCCAATAAGATCAAGCTT 890385 31 100.0 36 GATCAAGCTT ............................... CATAGGGGCATTCTCCGCCACAGATGCGCTGTCATT 890452 31 100.0 35 CGCTGTCATT ............................... TTGGGGTCGGCGCGATCTTTGGTGAAGTAGTGCAC 890518 31 100.0 35 AGTAGTGCAC ............................... AAGATTGACCGAAGTACCAGCGGCGGGCGTTGCGA 890584 31 100.0 34 GGCGTTGCGA ............................... TACACCACTTACCCGACTCATCCTGCGTGCACGC 890649 31 100.0 33 GCGTGCACGC ............................... CTCCATTGCATCTAATACAGACTCATGTGGTAT 890713 31 100.0 34 CATGTGGTAT ............................... GCTAAGGATATTCCATTCTTGTACAACATCATCG 890778 31 100.0 34 AACATCATCG ............................... TTGTGGGATCATCTGGGAGACTTCACTGGCTACT 890843 31 100.0 34 ACTGGCTACT ............................... TCAATATCAAGCTCGTAATCACCAGGCTGATACG 890908 31 100.0 36 GGCTGATACG ............................... CCTTCCGGTACTTGTAGACAAACTCTTGAACCCGGA 890975 31 100.0 36 TGAACCCGGA ............................... TGATAGACGGCCAGATGTATTTACTGCCCGCAAGGA 891042 31 100.0 34 CCCGCAAGGA ............................... CTGACCTCTGCTTAGGACTTGCCCAGTTGAAAGG 891107 31 100.0 35 AGTTGAAAGG ............................... CTTTCCCACATCTCCATATCCGCCGTCTCCCAGAG 891173 31 100.0 34 TCTCCCAGAG ............................... ACGGACGGTCAGACGTGCATCCGGCGGGGTGAGG 891238 31 100.0 35 CGGGGTGAGG ............................... CTGGGATGTCATTGCTACTGTCACAGATGCTGACG 891304 31 100.0 33 GATGCTGACG ............................... CAGGTCTATACAGTAACTGCGGATCTGACAGCA 891368 31 100.0 36 TCTGACAGCA ............................... GCTGCAATTGATGCTGCCCCAGCCCCGTAGGCTCTG 891435 31 100.0 35 GTAGGCTCTG ............................... CTCAGCGGCCACTTCGCCGCAGCCTGGTAGGCCAA 891501 31 100.0 35 GGTAGGCCAA ............................... TTCCGAACCTCCGGATCGATTGGTCGGGCGGAATA 891567 31 100.0 34 GGGCGGAATA ............................... GCGGCGGCGCGAAGTGGTCGGCGCAGTGGGACAC 891632 31 100.0 34 AGTGGGACAC ............................... GGACACGTTTCTTTTCCTTCCGGTATTTGTAGAT 891697 31 100.0 34 ATTTGTAGAT ............................... TCCTGACTGATGATCAATATGATTCATTTGCAAA 891762 31 100.0 35 CATTTGCAAA ............................... GGTCGCCAAGCCGATGTCGCCGACGGCCGGATCGA 891828 31 100.0 34 GCCGGATCGA ............................... CGCCAATGTTGACCGATGCTGCACGCCGGTCCTC 891893 31 100.0 34 GCCGGTCCTC ............................... TCGCGCACAACGCCGCCTTCGACGCGCTCGTGTG 891958 31 100.0 35 CGCTCGTGTG ............................... CGCCGATCCAGCTGCCGACCTTGCCGAGGAACCCC 892024 31 100.0 34 GAGGAACCCC ............................... GCTGCAAAGACCATGCGGTTAAGGCGTGCTGGGA 892089 31 100.0 35 CGTGCTGGGA ............................... TACATGACGTTCAATGACTCTGTGTCCGTGTCTGA 892155 31 100.0 34 CCGTGTCTGA ............................... GTTTTGATTGCACCTGACAGGCGATAGCCCTGAG 892220 31 100.0 35 TAGCCCTGAG ............................... GTAGGCGAGGGCGCGCCGGTAGGCCGTTCGATCAT 892286 31 100.0 37 GTTCGATCAT ............................... CGTCGTTTCACCGCATAGCTACACCAAAGGTGACGGC 892354 31 100.0 36 AGGTGACGGC ............................... CCATCACCGGGCGTGGAAGGTGGCGCGTCACCAACA 892421 31 100.0 34 GTCACCAACA ............................... CCGCGTGCAGACGCTTTGACAGCGCGCAACACCT 892486 31 100.0 CGCAACACCT ............................... CCCCGCCAGC ========== ====== ====== ====== ========== =============================== 60 31 34 GTTTCAATCCACGCGCCCGTGAGGACGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [6,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-4.90,-5.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [56.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [20,190] Score: 0.18/0.18 # # Final direction: R [0.64,5.18 Confidence: HIGH] >NC_006905 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =========================== ====== 3031535 27 92.6 34 GGTGAAACGT ..............A...........T TTTTCAGCCCTTGTCGACTGCGGAACGCCCCTCG 3031596 27 100.0 34 ACGCCCCTCG ........................... TGGCCGCGCAAATCGTCATGATTTAATTGCGTCG 3031657 27 100.0 34 AATTGCGTCG ........................... TGGAAGATATTGAAAGCGCCCAATCTTCCCAGCG 3031718 27 96.3 34 CTTCCCAGCG .............A............. CCAGTGTGCTGGAGTGAGGCGTGAATATGCAGCA 3031779 27 96.3 ATATGCAGCA .............A............. ACTAAAACTAT ========== ====== ====== ====== ========== =========================== 5 27 34 GTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [18,98] Score: 0.18/0.18 # # Final direction: R [0,2.1 Confidence: HIGH] >NC_006905 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3049243 29 100.0 32 NNNNNNNNNN AC.GC.....TT.T............... GGCTACACGCAAAAATTCCAGTCGTTGGCGCA 3049304 29 100.0 32 NNNNNNNNNN ............................. GGCTTTGGCTTCTTCACTCATATTTATTTGAC 3049365 29 100.0 32 NNNNNNNNNN ...............A............. ACCCGATGACGACAGCAGCTATATCTCCAGTG 3049426 29 100.0 32 NNNNNNNNNN ...............A............. CTCAGCAGGCTGGAGGAGATGATCAAAAATGG 3049487 29 100.0 32 NNNNNNNNNN ............................. TGCGCCACGCCTATACCATCCGAGTTTTGAGC 3049548 29 100.0 32 NNNNNNNNNN ............................. ACCACTAAGGGTTTCAAAATGACTACTAATTT 3049609 29 100.0 32 NNNNNNNNNN ...............C............. CGCGCCAGTGCCAATGTGAGCTGGCGTTATTA 3049670 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 8 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [60.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [51,298] Score: 0.18/0.18 # # Final direction: R [0,2.1 Confidence: HIGH] >NC_006582 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 3820964 20 100.0 46 ACTTGAATAC .................... ATAGAGTGCGACGGACGAAGTTGCACAGAGTAAGCGACGTAGAACA 3821030 20 95.0 47 ACGTAGAACA ............A....... ATAGAGTGCGACGTGAGAATGAACAAGAGTTCTATCAGGAATGGACT 3821097 20 100.0 46 GGAATGGACT .................... ATAGAGTGCGACGCGACAAGGTGATGGATGTAAACCCAGCATCAAA 3821163 20 100.0 45 CAGCATCAAA .................... TAAGAGTGCGACTTATATACAAAAGGAGATGATTACATGGCGGCA 3821228 20 100.0 45 CATGGCGGCA .................... TAAGAGTGCGACCCTTACATGAAAACGGAGCTTGGTTACTTTGTG 3821293 20 100.0 TTACTTTGTG .................... TAAGAGTGCGA ========== ====== ====== ====== ========== ==================== 6 20 45 ATTTCAATCCACGCACTCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [300,297] Score: 0/0.18 # # Final direction: R [0,4.91 Confidence: HIGH] >NC_006582 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 3751899 32 96.9 34 TTGAAAATAC ...............................C CGGACGACATATTGATTTCCATGGTGCAAGTATG 3751965 32 100.0 35 TGCAAGTATG ................................ AAAATAGAATCGATTTGCGTTTTAGGAGACGCCGC 3752032 32 100.0 35 GAGACGCCGC ................................ GGGTATCTACCACTATATCATTTATGGAAAGATGA 3752099 32 100.0 GGAAAGATGA ................................ AGCCAAATCT ========== ====== ====== ====== ========== ================================ 4 32 34 ATTTCAATCCACGCACTCACAAAGAGTGCGAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.25%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.60,-3.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [838,390] Score: 0.18/0.18 # # Final direction: R [0.18,5.28 Confidence: HIGH] >NC_006624 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 373034 29 96.6 38 CATGACGTAC ...........T................. GGGCGCTCCGTGACGTCACCGAGGCACCTAACACCTAA 373101 29 100.0 40 TAACACCTAA ............................. ACGGCACCACCCCTGCAAACACCACCAGCCAAAGCACGGA 373170 29 100.0 39 AAAGCACGGA ............................. TTTTCCGAAGTTCACTCCTGAGGCCGAGAGGAGGATTGA 373238 29 100.0 39 GGAGGATTGA ............................. ACATAGATATAGAGAAGCCCGCAGACATCAAGAAGGCGA 373306 29 100.0 39 AAGAAGGCGA ............................. GTGATGGAGGTGAAAGCCGATGTCTGATGTCCAGATTCA 373374 29 100.0 39 TCCAGATTCA ............................. GAATGGCGATGAAGAGCAGGCGAAGATTGACGCTCAAAA 373442 29 100.0 37 ACGCTCAAAA ............................. TATCCTCCTCACCGCTGGCCTCTGCGCCGTACCCTTA 373508 29 100.0 36 CGTACCCTTA ............................. CAAAGAACCCGAACCCTACCACCCTCGCGGAATTGA 373573 29 100.0 38 GCGGAATTGA ............................. TTTCGCGGAGTATTTGCCTTAAATCCTCCTTGATAATA 373640 29 100.0 38 CTTGATAATA ............................. TTTCACGTTACCTCACTCAGAAAGCCCTCGCAAACTCG 373707 29 100.0 39 CGCAAACTCG ............................. AGAAAGCACCAGTATGAGATAGCTCCAATGAAAAACCTG 373775 29 100.0 38 GAAAAACCTG ............................. TCGTTGAACCCGTTAAAAGCCATCTCCCCATCTTCGTG 373842 29 100.0 38 CATCTTCGTG ............................. TTCTCGACATGAAAAGGGAGATGGGCAGAGTCATTGAG 373909 29 100.0 39 AGTCATTGAG ............................. TTGAGTTTGAAGAGCTTTACCTTTTTCTTTGCGTGGACG 373977 29 100.0 38 TGCGTGGACG ............................. TACCCGAAGCAGAACATGAAACATTTATCGCCTTAACG 374044 29 100.0 CGCCTTAACG ............................. AGGGCGGTTT ========== ====== ====== ====== ========== ============================= 16 29 38 TTTCAATTCTCCTAGAGTCTTATTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.52%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.80,-0.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [48.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [109,518] Score: 0.18/0.18 # # Final direction: R [0,5.36 Confidence: HIGH] >NC_006624 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 469048 29 100.0 39 CGCGGCCAAG ............................. GGTGAGAAAATCGTAAAGGCGTTCAGAGAGCCGGCTCTA 469116 29 100.0 38 GCCGGCTCTA ............................. AAACTTTCCACACCTTGACTTTCACGTCGACGTCGGTA 469183 29 100.0 38 GACGTCGGTA ............................. TCCTCGTCGAGGAAGCCCATGCCAATGGCTCTGCGGAA 469250 29 100.0 37 CTCTGCGGAA ............................. GCGCTGGAAGGCCCTCCAGAAAATTGCAGAAATCCTA 469316 29 100.0 39 AGAAATCCTA ............................. TTTGAAGTCTTCAGGAAAGAGGGCATTCATGGAAAACTG 469384 29 100.0 37 TGGAAAACTG ............................. ATGGCCGGGTTCACCTGAACGTCATAGGTCGCGACCG 469450 29 100.0 39 GTCGCGACCG ............................. AGCACGAAGAACGCATCAACACCGCCCCACTTGTAGTTG 469518 29 100.0 37 CTTGTAGTTG ............................. GCGTAGCATAGTTGGGTAGTGCGGCCGCCTCGTGAGG 469584 29 100.0 38 CCTCGTGAGG ............................. GACGTGGGGACAGCCATTAAAGAACTGGGCGAAGACCG 469651 29 100.0 37 GCGAAGACCG ............................. CCTCTCCTTGATAACATCCAGCACGGCGCGCGTGGAG 469717 29 100.0 40 GCGCGTGGAG ............................. GCCCTCACTCAGGGCTGCCCCTCACCACTCCCCAAAGTCG 469786 29 100.0 39 CCCAAAGTCG ............................. GTCCGGGCTTTTGATTGTGGGCAATTCCTCCCAGGCCCG 469854 29 100.0 40 CCCAGGCCCG ............................. GTTAGAGATCAAAAGAAGGTCAAGGCGGGTGGTTCTCCCG 469923 29 100.0 42 GGTTCTCCCG ............................. TTGCGCAACACCCACCACCGTCACCCACCACCCACCTTTTTG 469994 29 100.0 39 CACCTTTTTG ............................. TTCTTGCTCGAAGGCCTCATCAGCGATGGGCTTGACGAG 470062 29 100.0 39 GCTTGACGAG ............................. TATTGACCCGCCGAAAAGCCCAGATTACGCCGATAGTTG 470130 29 100.0 39 CCGATAGTTG ............................. TCCCCGAATTTCCCGGATTTTCCCTATATTTCCCTATAG 470198 29 100.0 40 TTCCCTATAG ............................. AGGTCTCTGTCGTGGAGAGAAATGCAGACGGCAAGCTTGG 470267 29 100.0 41 GCAAGCTTGG ............................. CTGAGCCAAGGCTAGATGTTGAGCCTGAGCCAGAAGCGGGG 470337 29 100.0 35 AGAAGCGGGG ............................. TGTGGCCCAGATAAGGGCTGTGGCATAGGTTTACG 470401 29 100.0 38 TAGGTTTACG ............................. CAGTCTTCCCCGACTTCGGCGCGAGCATGATCTACGGG 470468 29 100.0 41 GATCTACGGG ............................. TAGGTCTTGCTCATAATCGCGTCGTGGCTCTCAAGGTTGAG 470538 29 100.0 CAAGGTTGAG ............................. AGGGCGGTTT ========== ====== ====== ====== ========== ============================= 23 29 38 TTTCAATTCTCTTAGAGTCTTATTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.97%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.80,-0.60] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [48.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [245,460] Score: 0/0.18 # # Final direction: R [0,4.77 Confidence: HIGH] >NC_006624 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 833495 30 100.0 39 NNNNNNNNNN .............................. TTTGCCACCCTGAATCACTCTTGCAACCGCTATTCTGAA 833564 30 100.0 42 NNNNNNNNNN .............................. CGTCTTCCTCATCGTCGTAGAGCTTGACCCTCCACCCACCGG 833636 30 100.0 37 NNNNNNNNNN .............................. TTTTTTAGGTGTAGTTTGGTGGTGTGGGCGAGGTTCA 833703 30 100.0 38 NNNNNNNNNN .............................. GCGGAGAAGAAGCCACGGGCTACGCAATACTTGCCTAC 833771 30 100.0 38 NNNNNNNNNN .............................. AAGAGACGATCATGCTCTCACCCCCAGGAGTTGCTCGT 833839 30 100.0 37 NNNNNNNNNN .............................. AACGATTTGTTCTCTGTGGACTTGGGTCTCATTGGGA 833906 30 100.0 42 NNNNNNNNNN .............................. GGAACACATCGCCAGGAACCTCAAGCGACTTCGGGTGGTCGG 833978 30 100.0 38 NNNNNNNNNN .............................. CCAAAATGAATAAAAGCCCCTATCCCTAATAAATGTAA 834046 30 100.0 37 NNNNNNNNNN .............................. GCAGATGGTGAGATGGAGGTAACAATAGAATTTGTGG 834113 30 100.0 37 NNNNNNNNNN .............................. GGTTAAACTCAGTCAGAGGGCCAGTGAGGTCCTGAGA 834180 30 100.0 40 NNNNNNNNNN .............................. CCTGTGCAGCCTGGAGGTAGTAGTCACCGATCATTTCCTC 834250 30 100.0 37 NNNNNNNNNN .............................. TCTTCAAGTGAAGCGAGGATTTCAGCGATCTCTCTCT 834317 30 100.0 40 NNNNNNNNNN .............................. AACACTTGCGAACTTTCCCGGCCAGAACAAGGAAAGCGAG 834387 30 100.0 38 NNNNNNNNNN .............................. CAAGTTTGAAGAATTAGTCAGTGAAAAAGGCAAACAGT 834455 30 100.0 38 NNNNNNNNNN .............................. CAGACTTGCCGTTCACTGGGACAGGGATGCGGAAGCGG 834523 30 100.0 38 NNNNNNNNNN .............................. ATGGACTGAAAGACCCTCTTCAGTTCTTCCGCGTTTTT 834591 30 100.0 37 NNNNNNNNNN .............................. AGTTCTAAGACTCTCCCCAAGAAAGGGCACTACGTCT 834658 30 100.0 40 NNNNNNNNNN .............................. TAGGACATCACCTCACGGTGCTGGCGGGAGGGCCTTCACG 834728 30 100.0 35 NNNNNNNNNN .............................. AGATAACGCTCGACGTGCCAGCAAACAAAGCCGAA 834793 30 100.0 38 NNNNNNNNNN .............................. GAGTTCTAATGATTAGCTTAACAATATCCCCATCTGAT 834861 30 100.0 38 NNNNNNNNNN .............................. TCACTTCTCCTGAGAAACGAAAGGAGTCGAGAGTCTGT 834929 30 100.0 38 NNNNNNNNNN ..C........................... TACTTCCGGCTAAGAACGAAAAGCCGCTCGACAAGCCG 834997 30 100.0 40 NNNNNNNNNN .............................. ACATAGCCCTCTCCCAGGCCGCACAGGTCTTCAGGTACAA 835067 30 100.0 38 NNNNNNNNNN .................G...........C GATTAAGGGTGGCGTCTGCGCTGGCGAACGGGCTTACG 835135 30 100.0 37 NNNNNNNNNN .................G...........C GTAGTACTTCTTAAGCATGCGTTCACGCCTTAGATAG 835202 30 100.0 38 NNNNNNNNNN .................G...........C CTGTGGTGGTCATGATAGTACGTGATAGCAGCACTAGC 835270 30 100.0 37 NNNNNNNNNN .................G...........C TCGCTATGACAATCTTTGCGTCCTCATCCATCAGAAT 835337 30 100.0 38 NNNNNNNNNN .................G............ CTATCAGGCCCTCTGTCTGGCCAGTTAGGTCCTTCCAC 835405 30 100.0 37 NNNNNNNNNN .................G............ GAAGATCGTGGCCAAGATACTCAACGAGATGTCGAAG 835472 30 100.0 38 NNNNNNNNNN .................G............ GTCTTCGCGAGGATCTCCCGTGAAGAAGACTGAGACCG 835540 30 100.0 47 NNNNNNNNNN .................G............ CAAGGACTACCTACAATTTCCCTACCACTATCGGCGCGTTGCAATAA 835617 30 100.0 37 NNNNNNNNNN .................G............ AGAATAACGCCGTCACCGGCCAGGCGGAGCGCTTTAG 835684 30 100.0 37 NNNNNNNNNN .............................. CAACTCTCATACATCACACCCCCAGCTCATAGATTTT 835751 30 100.0 38 NNNNNNNNNN .............................. AGGCTCGCCGCGCCGCCGAGGAGCATCAGCGCTGGCTC 835819 30 100.0 40 NNNNNNNNNN .............................. AGCTTATACATCACGTAAACCGTGAACGCTGAACCGACCA 835889 30 100.0 36 NNNNNNNNNN .............................. GTGTAGCAGTATGCCCAGAACCGTGCCCACTGCCAG 835955 30 100.0 1 NNNNNNNNNN ........................CA...A NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 37 30 38 GTTGCAATAAGACTCTAAGAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.60,-1.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [60.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [460,28] Score: 0.18/0.18 # # Final direction: F [5.36,0.37 Confidence: HIGH] >NC_006814 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =========================== ====== 1541039 27 100.0 34 NNNNNNNNNN ..G.T........T.T.A.A..A.... TAAAAGGCTCTAAAAGCTACAGAGTTACCATCGA 1541100 27 100.0 34 NNNNNNNNNN .............T.T........... TTGGAATCTCATCGTAAGAAATAAGTCGCATATA 1541161 27 100.0 34 NNNNNNNNNN ........................... TCCTTTTCCTAGGATCTTCATAAGCTTCTCGCCA 1541222 27 100.0 34 NNNNNNNNNN ........................... TATCGTAGTCAATCTCGTACTTAAAACCACCCTG 1541283 27 100.0 34 NNNNNNNNNN ........................... TCCAGGTTGACTTGCGCTAGGTGTTGCATCAATA 1541344 27 100.0 34 NNNNNNNNNN ........................... TTAGGCAAATAGCCAATTTTTATCATACATTCCG 1541405 27 100.0 34 NNNNNNNNNN ........................... TCGGCAATTTTTGAAACAAACAACTATGTATATA 1541466 27 100.0 34 NNNNNNNNNN ........................... TAAATAAGGAAGATATTGCCACCCTCGGTACCCA 1541527 27 100.0 34 NNNNNNNNNN ........................... TACAAGTTTTGCTCTAACCATGATGTTGTAAACA 1541588 27 100.0 34 NNNNNNNNNN ........................... TACGTTAAAGCGGACAATAAGCTTCAACGTTTTA 1541649 27 100.0 34 NNNNNNNNNN ........................... TCGTGCTTGAAATTGCTCTCGGGGTTTCGCCTAA 1541710 27 100.0 34 NNNNNNNNNN ........................... TATTTGCTGCGAGTAACTCTGACTTGTTTACCCG 1541771 27 100.0 34 NNNNNNNNNN ........................... TTTTAGCTAAGTTTAAGACCGAAGATGGCCAAAG 1541832 27 100.0 34 NNNNNNNNNN ........................... TCGGCAATTTTTGAAACAAACAACTATGTATATA 1541893 27 100.0 34 NNNNNNNNNN ........................... TCGGCAATTTTTGAAACAAACAACTATGTATATA 1541954 27 100.0 34 NNNNNNNNNN ........................... TACAAGTTTTGCTCTAACCATGATGTTGTAAACA 1542015 27 100.0 35 NNNNNNNNNN ........................... TAGCTATCCAAATATTAAATTTGCACTAGTTAAGG 1542077 27 100.0 34 NNNNNNNNNN ........................... TGAAGAATTTTATCTTCTAGGTGGCTTTTTTGTG 1542138 27 100.0 34 NNNNNNNNNN ........................... TAGAAATATTTGATTTTGATAGTGAAAAAGAATA 1542199 27 100.0 34 NNNNNNNNNN ........................... TTCAAGATCAACCATTCATTTGCCACGCAAATCG 1542260 27 100.0 34 NNNNNNNNNN ........................... TTATTTTCTGGTGTGAAAAATGCTGATGATATTG 1542321 27 100.0 34 NNNNNNNNNN ........................... CCCAAGATATAATTAAAAGAAAATATCGTAGTCA 1542382 27 100.0 34 NNNNNNNNNN ........................... CTTTGATTTGAGTTAAGTACCGGTGCATCAATGA 1542443 27 100.0 34 NNNNNNNNNN ........................... CTCTTTAATGTGACCAAAAGCGCTCGTAGCAGCA 1542504 27 100.0 34 NNNNNNNNNN ........................... CGGACGCAAAAGGGCAGAAAGCTAATTTATGACG 1542565 27 100.0 34 NNNNNNNNNN ........................... CTTGCTATGTCCGCTCTTGCTTGCATTGCAGTCA 1542626 27 100.0 34 NNNNNNNNNN ............T.............. CCCACGCCACATATTGTGTGCGGAATAGCCTAAG 1542687 27 100.0 34 NNNNNNNNNN ........................... CTCTGCCAAAATAGTAGCCGAATCTGGAAAATCA 1542748 27 100.0 34 NNNNNNNNNN ........................... CAAAGTGTCACAAAACTAGCACCTTTCATTAAAA 1542809 27 100.0 34 NNNNNNNNNN ........................... CAGAGTTTAGTCGTCGCAATGTGTGTCTCAATGA 1542870 27 100.0 34 NNNNNNNNNN ........................... CTAATACGTAGGTGGCAAGCGTTGTCCGGATTTA 1542931 27 100.0 34 NNNNNNNNNN ........................... CATAAAAATAAGAGGAAACCACCGTTTTCTCTTA 1542992 27 100.0 1 NNNNNNNNNN ........................... NNNNNNNNNN ========== ====== ====== ====== ========== =========================== 33 27 34 GGATCACCTCCACATACGTGGAGAAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:51.85%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-5.90,-6.10] Score: 0/0.37 # Array degeneracy analysis suggestion: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [206,216] Score: 0/0.18 # # Final direction: R [0,0.41 Confidence: MEDIUM] >NC_006823 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================== ====== 1 21 100.0 41 NNNNNNNNNN .A.CATCAC.CA......... TGCCTTGCGGCAAGAGCTCACGATCTCGACGAGGTGTTCCC 63 21 100.0 41 NNNNNNNNNN ..................... CGTCAGGTCTGCAACAAAGATCAACCCTACTCGGTGTTCCC 125 21 100.0 41 NNNNNNNNNN ..................... GGCTGCGAGGATGGCAGCAACCCGCATTTCAGTGTGTTCCC 187 21 100.0 41 NNNNNNNNNN ..................... TGTCTTTTTTGGGTCTTGCTGTTTGCGCGGCTGGTGTTCCC 249 21 100.0 41 NNNNNNNNNN ..................... GGCCGACGTTCGGTCAAGAGGCTGGACCCGTCCGTGTTCCC 311 21 100.0 41 NNNNNNNNNN ..................... CAAGTAACGACACGCCCACCAGTCGCGCCCCCGGTGTTCCC 373 21 100.0 41 NNNNNNNNNN ..................... AATGCCCTCTTGCGTCTCACGACGTTCGAGGCCGTGTTCCC 435 21 100.0 41 NNNNNNNNNN ..................... GATCACACGCCGCTCGATTGGATCGTCATCTGCGTGTTCCC 497 21 100.0 41 NNNNNNNNNN ..................... GGTGGAACGAGCCTTCTCCATGCCCCCTCCGGCGTGTTCCC 559 21 100.0 1 NNNNNNNNNN ..................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================== 10 21 41 CGCGCATCGCGGGGGTTGAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [3,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [45.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [2,141] Score: 0.18/0.18 # # Final direction: R [0.27,0.59 Confidence: MEDIUM] >NC_006823 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 4003 29 100.0 33 NNNNNNNNNN ............................. GGTTATGATGATGTGTGTCGGCGCGACGGTGGC 4065 29 100.0 33 NNNNNNNNNN ............................. TGTGTCGCGTTTGCGGACGCGGTCCCCGTCGAG 4127 29 100.0 39 NNNNNNNNNN .................TATAA.CG.GG. TTGAAGCACTGACCCCCCGCGTTTCTCGGGTCGGCAGGC 4195 29 100.0 33 NNNNNNNNNN ............................. GAACGTGGTTCGAGTCGCATTGAGCAAGCTCTT 4257 29 100.0 33 NNNNNNNNNN ............................. GTTGTGCAGAACGCTACGGCTACACGCATGACC 4319 29 100.0 34 NNNNNNNNNN ............................. TGAGCTGACCTAGTAGCGCTAGCACCTATTCGAA 4382 29 100.0 33 NNNNNNNNNN ............................. GTAGCTGAGGGGGTGAGTACACCGTCGATCTCG 4444 29 100.0 33 NNNNNNNNNN ............................. CGCGGAAGGGGTCGGAGTTGAACACCATCGCGA 4506 29 100.0 34 NNNNNNNNNN ............................. TATGGGCTTCTATTGCGGCGCGTCGAGCGTCACT 4569 29 100.0 33 NNNNNNNNNN ............................. GGCCGCCGAGTTGGTCGGGTCGCTCCAGAAGCG 4631 29 100.0 34 NNNNNNNNNN ............................. GTCGCGTCCCAGCCCGTTACGTCACCAGCTCCTC 4694 29 100.0 33 NNNNNNNNNN ............................. GATCACACGCCGCTCGATTGGATCGTCATCTGC 4756 29 100.0 33 NNNNNNNNNN ............................. GATGTACAAACTCATCCAGGCGTCGGTCAAATT 4818 29 100.0 33 NNNNNNNNNN ...........A.C........T.GA.G. GACTTGCTGTAACTGCCCTCGAAGGCGAATGTT 4880 29 100.0 1 NNNNNNNNNN ..........TAT...T........A..A NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 15 29 33 GTGTTCCCCGCGCATCGCGGGGGTTGAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-13.70,-13.50] Score: 0/0.37 # Array degeneracy analysis suggestion: F [9-12] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [379,76] Score: 0.18/0.18 # # Final direction: F [0.59,0.37 Confidence: LOW] >NC_007296 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 777299 36 100.0 30 NNNNNNNNNN .................................... TGCTCCAGATGGATTTTTAAACTGATTATT 777365 36 100.0 30 NNNNNNNNNN .................................... TAGAAATTGACAATGCTTTTTCTTTTGTCT 777431 36 100.0 30 NNNNNNNNNN .................................... AATAGAGCTAGACAAAAAATTGAGTTTGAC 777497 36 100.0 30 NNNNNNNNNN .................................... GACATATTAACGTCCTTTCTCCTGCTTTCC 777563 36 100.0 1 NNNNNNNNNN .............................T.C.TT. NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 5 36 30 GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: F [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-2.20,-0.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [104,141] Score: 0/0.18 # # Final direction: F [1.55,0 Confidence: HIGH] >NC_007297 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 779408 36 100.0 30 AGTCTACGAG .................................... GGGTGGTTGGCTGACGCATCGCAATATTAA 779474 36 100.0 30 GCAATATTAA .................................... AGGAATATCCGCAATAATTAATTGCGCTCT 779540 36 100.0 ATTGCGCTCT .................................... TAAATTTGTTTAGCAGGTAAACCGTGCTTT ========== ====== ====== ====== ========== ==================================== 3 36 30 GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: F [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-2.20,-0.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [104,198] Score: 0/0.18 # # Final direction: F [0.87,0 Confidence: HIGH] >NC_006908 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 39617 36 100.0 30 NNNNNNNNNN T..C................................ TGTTTGAAAAAGTGGAGTTGTTTGTCTAAT 39683 36 100.0 30 NNNNNNNNNN .................................... ATTTATCTTGCAATGCTTGGAGTAAAATTA 39749 36 100.0 30 NNNNNNNNNN ............G.........A............. ATTTATCTTGCAATGCTTGGAGTAAAATTA 39815 36 100.0 30 NNNNNNNNNN ......................A............. ATATAAAAAATTTTATTTCCGAAAGTGAAT 39881 36 100.0 30 NNNNNNNNNN .................................... TGAATCTCTTCTTCGTTTAATGTATCACGT 39947 36 100.0 30 NNNNNNNNNN .................................... ATGTTTTAGAATATGATATTAATTTTAAAA 40013 36 100.0 30 NNNNNNNNNN .................................... TATTAAGTGTAGATAAAAAATTATCTTTAA 40079 36 100.0 30 NNNNNNNNNN .................................... AATTACTACATAATGGAAAATCAAATCAAA 40145 36 100.0 30 NNNNNNNNNN .................................... ATATAAAAAATTTTATTTCCGAAAGTGAAT 40211 36 100.0 30 NNNNNNNNNN .................................... TGTAGGTTATACAGTTGCTTTAAATACTTA 40277 36 100.0 30 NNNNNNNNNN .................................... CAATGCAGCACTATTTAGAAAATGATTTAA 40343 36 100.0 30 NNNNNNNNNN .................................... CAGACCAGCCTTATTATAAAAGTGAAATTT 40409 36 100.0 30 NNNNNNNNNN .................................... TTTAATTTTGCGCTATCTTTAATTTTTTTA 40475 36 100.0 30 NNNNNNNNNN .................................... AAAAGAAGAATGAGATTTTTTACTAAATGA 40541 36 100.0 30 NNNNNNNNNN ...................................T CATATATCTCCTTTTATTGAGAGTTGTTTT 40607 36 100.0 29 NNNNNNNNNN .................................... CTGCAGGACAAATAACTTTAAGAAATACA 40672 36 100.0 30 NNNNNNNNNN .................................... TTTAAGAAACATAGAAAATAATCAATATGA 40738 36 100.0 30 NNNNNNNNNN .................................... TACAAAGACCAGAACTAATAGGAGCATTTT 40804 36 100.0 30 NNNNNNNNNN .................................... TGACGAAACTCATTCATATCAATACCTTTT 40870 36 100.0 30 NNNNNNNNNN .................................... GCATAACTTAATTTGTATTTATAAGGTCGT 40936 36 100.0 30 NNNNNNNNNN .................................... AGTGGAGGTTTTAGACAATGAAGTAGATAA 41002 36 100.0 30 NNNNNNNNNN .................................... GATTAGTAGATAACGTAATTAAAGTAGTAA 41068 36 100.0 30 NNNNNNNNNN .................................... GACCTTAATGTGCTAACAAATGGACAAATT 41134 36 100.0 30 NNNNNNNNNN .................................... ACATTAAACAAATCTAAATTTGCATTTAAA 41200 36 100.0 30 NNNNNNNNNN .................................... CGAATTAAATGCAGAAGTTATTGCAATTAA 41266 36 100.0 30 NNNNNNNNNN .................................... GAGTTTCTGACTTTGAGACTATAACAGCGA 41332 36 100.0 30 NNNNNNNNNN .................................... TGAAACAAGTCCAGTCGATAAAGGAAATGA 41398 36 100.0 30 NNNNNNNNNN .................................... CTTCACCATGATAATATTTTGCTAATTCTA 41464 36 100.0 30 NNNNNNNNNN .................................... TCATTGTATAATCTTTTTTTCAATTTGTAT 41530 36 100.0 30 NNNNNNNNNN .................................... CAGATCAACCTTATTATAAAAGTGAAATTT 41596 36 100.0 30 NNNNNNNNNN .................................... TAGAATAGGTTAAACCCAGTCTGCTTAATA 41662 36 100.0 30 NNNNNNNNNN .................................... CCCACAATTTATTACAAGAAATAATAAACA 41728 36 100.0 30 NNNNNNNNNN .................................... ATATATTATTATACTATCAAAATAATACAT 41794 36 100.0 30 NNNNNNNNNN .................................... AATATTAGAGCAGTAAAATTAAGTATTTAT 41860 36 100.0 30 NNNNNNNNNN .................................... AGTATTAACTCCTGTAATTCTAATTAAATG 41926 36 100.0 30 NNNNNNNNNN .................................... AAGAGCAATTGATTTAAGAATTTTCCAACC 41992 36 100.0 30 NNNNNNNNNN .................................... ATGCACACACTGACACCATAATATAAAAAT 42058 36 100.0 30 NNNNNNNNNN .................................... CTTCACCGTGATAATAAGACGTTAATTCGA 42124 36 100.0 30 NNNNNNNNNN .................................... AATATCTTCTCTTGTTGTATATCATTCGTC 42190 36 100.0 30 NNNNNNNNNN .................................... ATATTATAGTTAGTAGTTTCTTCTTTATTC 42256 36 100.0 30 NNNNNNNNNN .................................... AGAGTGATTATACGCTCACTTCAAAATTAA 42322 36 100.0 30 NNNNNNNNNN .................................... GAATGATAATAACTATATCTGCTTTTTGCT 42388 36 100.0 30 NNNNNNNNNN .................................... TTATATGCGCCTGCTTTTCCATGGAAAAAG 42454 36 100.0 30 NNNNNNNNNN .................................... ATGGTATCAGGTGATAGTAAAATAGTAGAA 42520 36 100.0 30 NNNNNNNNNN .................................... TACTGGATTTGAATTAAATTTTGATGACGG 42586 36 100.0 30 NNNNNNNNNN .................................... CAATGCAACACTATTTGGAAAATGATTTAA 42652 36 100.0 30 NNNNNNNNNN .................................... GGTAATGATTCAGGCTCTATTTGATAGATT 42718 36 100.0 30 NNNNNNNNNN .................................... AGACTCAAGCACCAATAGATTCAGTATTAA 42784 36 100.0 30 NNNNNNNNNN .................................... TAAAAGAAAGAGAGTTATACTCTCTTTCTT 42850 36 100.0 30 NNNNNNNNNN .................................... GCTGACTGTTCTTTGTTGTTTGTTTCATTT 42916 36 100.0 30 NNNNNNNNNN .................................... ATTCTGCCCAACTAATAAATCAAAAAAATA 42982 36 100.0 30 NNNNNNNNNN .................................... TGTCTGTATCTAAATAATAAACATTTTTTC 43048 36 100.0 30 NNNNNNNNNN .................................... GCACTGTCTGCAAGCTTTGCTTATGTAGCT 43114 36 100.0 30 NNNNNNNNNN .................................... TCACGAAGTTTTATGAAAAGAAATTGAAAA 43180 36 100.0 30 NNNNNNNNNN .................................... CTAATTTATCAAATGAAATTGTTAATTTAT 43246 36 100.0 30 NNNNNNNNNN .................................... CCTACGCTTGCAACTTTTAAATTCGTCATA 43312 36 100.0 30 NNNNNNNNNN .................................... ATAGGTCAGATTTTTTCTAATGCACCCTTT 43378 36 100.0 30 NNNNNNNNNN .................................... TGATTATATAAGAGAGCACCAAAATGCTTA 43444 36 100.0 30 NNNNNNNNNN .................................... ATATATTATTTTAATGGTAATTTAATACAT 43510 36 100.0 30 NNNNNNNNNN .................................... ACAAAATTGTAAATAATAAATTATTACTTG 43576 36 100.0 30 NNNNNNNNNN .................................... TGAAACATCATTTATATTATCTGAACAAGA 43642 36 100.0 30 NNNNNNNNNN .................................... TCTAAACTTATCAGCAAACCACATTTATCA 43708 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 63 36 29 GTTTAAGAATACATAAGAATGATACTACACCAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.22%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis suggestion: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [80.0-83.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [257,20] Score: 0.18/0.18 # # Final direction: R [0.18,0.41 Confidence: MEDIUM] >NC_007164 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 773366 29 100.0 32 NNNNNNNNNN A....A....................... CAGGAACAAGCCTTCTTCCACTGGGACCTGGA 773427 29 100.0 32 NNNNNNNNNN ............................. TGTGTGAACCTACATAACGGCAACCGGATCGA 773488 29 100.0 32 NNNNNNNNNN ............................. TCATGGCACTCTCTGACACTGAACAGCGCGAA 773549 29 100.0 32 NNNNNNNNNN ............................. CTGACACTGGCCACCCCGCCGCACTCAAACAC 773610 29 100.0 32 NNNNNNNNNN ............................. AGCATCGTTGTGCGTCTGATTCATGAACCCTC 773671 29 100.0 32 NNNNNNNNNN ............................. CCAGAATTCCCAGAAGCCACAGCCTTCTGGTA 773732 29 100.0 32 NNNNNNNNNN ............................. ATCTTGCCGATGGACTCCTTAAAGCTTTTAGC 773793 29 100.0 32 NNNNNNNNNN ............................. TTCTATCTCGTCTCCGAACCCGTTCGTCGTCA 773854 29 100.0 32 NNNNNNNNNN ............................. ATCTTGCCGATGGACTCCTTAAAGCTTTTAGC 773915 29 100.0 32 NNNNNNNNNN ............................. GCCTTAGTGACAGATGTCAAGCTAGTGAACCA 773976 29 100.0 32 NNNNNNNNNN ............................. ATCACCCAGAGCGTGCCGGGCGACCGCCGATG 774037 29 100.0 32 NNNNNNNNNN A............................ CGCACCCGTTTTTGATTGGATTGGTGAAAAGG 774098 29 100.0 32 NNNNNNNNNN ............................. TCACCATCAACGGCGGTAACGGCTCGAAGATT 774159 29 100.0 32 NNNNNNNNNN ............................. GCTGTACTTCGCGCGCTCTCGGGCTAAACGGG 774220 29 100.0 32 NNNNNNNNNN ............................. GAACACATCGCCAAGGGTGGCCGCGACGCCGC 774281 29 100.0 32 NNNNNNNNNN G............................ ACCCCACCCCCGCCGTTTTGGTTCTCCCTCGG 774342 29 100.0 32 NNNNNNNNNN ............................. GCAGCCATAACAGTCTGCGCAGCAGCGGCAAG 774403 29 100.0 32 NNNNNNNNNN ............................. GGATGCAGCCCACGTTGATATTGATACGGGCA 774464 29 100.0 32 NNNNNNNNNN ............................. TCGAAGTCTGGTCCAGCGTTGCAGCAGTTCGG 774525 29 100.0 32 NNNNNNNNNN ............................. GTCTCAATCGCCTTAGTGTTAGCATCGGAAAT 774586 29 100.0 32 NNNNNNNNNN ............................. GGCGTGCCGGGCGACCGCCGATGATTCATCCG 774647 29 100.0 32 NNNNNNNNNN ............................. GTCGACGGATCCCGCCGATACGCAGAGTGGAA 774708 29 100.0 32 NNNNNNNNNN ............................. TCGCACTAGGTGTGCTGGTCACTATCGGAGGA 774769 29 100.0 32 NNNNNNNNNN A............................ TCAAGCAGAATCTTCTGCATTGCTAAGCTCCT 774830 29 100.0 32 NNNNNNNNNN ............................. CGCCGCCGCAATTCCCCCGGTGGTGTTGAGTC 774891 29 100.0 32 NNNNNNNNNN G............................ AGGTTCAACGCGGTCTGCGCCGCAGTCTGCGC 774952 29 100.0 32 NNNNNNNNNN ............................. CTACCCATAGCCTGGAAAGCTTCACCGATCAG 775013 29 100.0 32 NNNNNNNNNN ............................. CGGTCAGACAGCAACGCGGGAATCTTATCGCC 775074 29 100.0 32 NNNNNNNNNN ............................. TTTAATCTCGCCATCGTGGCCGCGAGCTATTA 775135 29 100.0 32 NNNNNNNNNN ............................. TCTTCCTTGACGTTCTCGTTGCCTGCGATCAG 775196 29 100.0 32 NNNNNNNNNN ............................. GCGCGCAGCATAGCGCAGCGGGCGGGTCCAGG 775257 29 100.0 32 NNNNNNNNNN ............................. AGCGCAGCCGTAGACATGGCATCCCAGATCGG 775318 29 100.0 32 NNNNNNNNNN ............................. CCAGGCAGAATCTCGCACACCACCGGCGCATC 775379 29 100.0 32 NNNNNNNNNN ............................. TGACAGACCTGACTAGCCCCACCGTGGGAGAG 775440 29 100.0 32 NNNNNNNNNN ............................. TCGTTCGCAGCATGCCAGGCGGTATCCCAATC 775501 29 100.0 32 NNNNNNNNNN A............................ TTATAGGTTGCCGGGTTCTGCCAGTCAGTAGC 775562 29 100.0 32 NNNNNNNNNN ............................. GGAGTTCGCGTCTGATGCTATGGCTGGCCTGT 775623 29 100.0 32 NNNNNNNNNN ............................. AGGACAGTATCAGCCAGGTCTGGCGAATGTCC 775684 29 100.0 32 NNNNNNNNNN ............................. ACACCATACCCGAGGCCGCCGAAATACTACGG 775745 29 100.0 32 NNNNNNNNNN A............................ CGTAGCCGATCACCGGGTGTACCTTTGGGCGA 775806 29 100.0 32 NNNNNNNNNN ............................. ATCCCAAATCCACTTAACGAAATTACCGAAAG 775867 29 100.0 32 NNNNNNNNNN ............................. CGGTCTGGAGGAGTCCGCAGGCCTGCTGGGTG 775928 29 100.0 32 NNNNNNNNNN ............................. CGGGCGTACCTTTGGGCGACTTGGAAAGACGA 775989 29 100.0 32 NNNNNNNNNN ............................. TCAGACAGGTCTTTCTGCTGATCTTCATACTT 776050 29 100.0 32 NNNNNNNNNN ............................. ACCATGTTCGGCACTCTGAAGGTTGTGCGTGA 776111 29 100.0 32 NNNNNNNNNN ............................. CGCGTTGCTTTACCCAACGTCTCCGCCAGGTG 776172 29 100.0 32 NNNNNNNNNN ............................. AGAACAGCCTCTGCGACCTCGGGCGGCATTGC 776233 29 100.0 32 NNNNNNNNNN ............................. AGACCCTTGATTGTCTCCTCGAGCGGGGTGAC 776294 29 100.0 32 NNNNNNNNNN ............................. TAGGACATCAGCCCCGTCAGCTTCACAACGGA 776355 29 100.0 32 NNNNNNNNNN ............................. CTCTGCCTCTACAGGCTCCGCCTCTACAGTTT 776416 29 100.0 32 NNNNNNNNNN ............................. GGGCGGTTTTGGCCGGTGGGTGCCGGGCGTGG 776477 29 100.0 32 NNNNNNNNNN A............................ GGCACACCCCCTTTAACCTGCAAAAACAAGGT 776538 29 100.0 32 NNNNNNNNNN T............................ TAGTGCAGCCTGCAGCCCGGACGGGATCGGCA 776599 29 100.0 32 NNNNNNNNNN ............................. TGCAGAATCCGCGGGCGATCTTGAGCGAGACG 776660 29 100.0 32 NNNNNNNNNN ............................. CGAGTGGATTGGTCAGTCTGTTCTCAGGTCTG 776721 29 100.0 32 NNNNNNNNNN ............................. CACCCACAGAGGAAGAATGGCACAACCTACAA 776782 29 100.0 32 NNNNNNNNNN ............................. ACAACAAAGACGCACAACAAAACCTCGTCGGC 776843 29 100.0 32 NNNNNNNNNN A............................ ACCTGCGGACTCCTCCAGCCCGAAACCGAATT 776904 29 100.0 32 NNNNNNNNNN G............................ GTGACTGGATTGTGGTCGGGGCTCGTCGGCTT 776965 29 100.0 32 NNNNNNNNNN ............................. TGCTTCACAACCGCGCGAGACTCCACCAGGGC 777026 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 61 29 32 CGGCTCATCCCCGCTGGCGCGGGGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [3,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [4-5] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [45.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1395,417] Score: 0.18/0.18 # # Final direction: R [0.18,0.64 Confidence: MEDIUM] >NC_007168 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================== ====== 328283 21 100.0 39 NNNNNNNNNN .CTGATC..ACA...A.AG.T AACTCACAAAGCGCGTCAACAAGCACAGCGAACAGTCAA 328343 21 100.0 21 NNNNNNNNNN ..TG.....ACA...AA.... ACAAGCACAGCGAACAGTCAA 328385 21 100.0 21 NNNNNNNNNN ...G.....AC....A..... ACAAGCACAGCGAACAGTCAA 328427 21 100.0 21 NNNNNNNNNN ...G.....ACA...A..... ACAAGCACAGCAAACAGTCAA 328469 21 100.0 21 NNNNNNNNNN ...G.....ACA...A..... ACAAGCACAGCGAACAGCCAA 328511 21 100.0 21 NNNNNNNNNN ...G.....ACA...A..... ACAAGCACAGCGAACAGTCAA 328553 21 100.0 21 NNNNNNNNNN .........ACA...A..... ACAAGCACAGCGAACAGCCAA 328595 21 100.0 27 NNNNNNNNNN .........ACA...A..... ACGAGCGTGAGTGATTCAACAAGTGCA 328643 21 100.0 33 NNNNNNNNNN ...........A....GA... ACGTCAACAAGCGTGAGTGACTCAACAAGTGCA 328697 21 100.0 33 NNNNNNNNNN ...........A....AT... GCGTCAACAAGTGTGAGTGATTCAACAAGTGCA 328751 21 100.0 33 NNNNNNNNNN ..................... ACATCAACAAGTGAGAGTGACTCAACAAGCGCA 328805 21 100.0 33 NNNNNNNNNN .....G.....A....AA... ACAAGTACGAGTCTCTCAGACTCATTAAGTGCA 328859 21 100.0 33 NNNNNNNNNN ...........A....AT... GCGTCAACAAGCGTGAGTGATTCAACAAGTGCA 328913 21 100.0 33 NNNNNNNNNN .....G.....A....GA... GAAAGTGCGAGTCTTTCAGACTCAGCAAGTGCA 328967 21 100.0 51 NNNNNNNNNN ...........A....A.... ACATCAACAAGTGAGTCAACATCAACAAGTGAGAGTGACTCAACAAGCGCA 329039 21 100.0 33 NNNNNNNNNN .....G.....A....GA... GAAAGTGCGAGTCTTTCAGACTCAGCAAGTGCA 329093 21 100.0 33 NNNNNNNNNN .....G.....A....GA... GAAAGTGCGAGTCTTTCAGACTCAGCAAGTGCA 329147 21 100.0 33 NNNNNNNNNN .....G.....A....GA... GAAAGTGCGAGTCTTTCAGACTCAGCAAGTGCA 329201 21 100.0 33 NNNNNNNNNN .....G.....A....GA... GAAAGTGCGAGTCTTTCAGACTCAGCAAGTGCA 329255 21 100.0 33 NNNNNNNNNN .....G.....A....GA... GAAAGTGCGAGTCTTTCAGACTCAGCAAGTGCA 329309 21 100.0 33 NNNNNNNNNN .....G.....A....AA... ACAAGTACGAGTCTTTCAGACTCAGCAAGTGCA 329363 21 100.0 33 NNNNNNNNNN ...........A....A.... ACATCAACAAGTGTGAGCGATTCAACAAGCGCA 329417 21 100.0 33 NNNNNNNNNN ..................... ACATCAACAAGTGTGAGCGATTCAACAAGCACA 329471 21 100.0 33 NNNNNNNNNN ..T......GAT.....A... ACGTCAACAAGCGTGAGTGATTCAACAAGTACA 329525 21 100.0 33 NNNNNNNNNN ..T..G.....A....GA... ACATCAACAAGTGTGAGCGATTCAACAAGTGCA 329579 21 100.0 33 NNNNNNNNNN ..................... ACATCAACAAGTGTGAGCGATTCAACAAGCACA 329633 21 100.0 33 NNNNNNNNNN ..T......GAT.....A... ACGTCAACAAGCGTGAGTGATTCAACAAGTACA 329687 21 100.0 33 NNNNNNNNNN ..T..G.....A....GA... ACATCAACAAGTGTGAGCGATTCAACAAGTGCA 329741 21 100.0 33 NNNNNNNNNN .........C.A....AA... ACAAGTACGAGTCTTTCAGACTCAGCAAGTGCA 329795 21 100.0 33 NNNNNNNNNN ...........A....A.... ACATCAACAAGTGTGAGCGATTCAACAAGCACA 329849 21 100.0 33 NNNNNNNNNN ..T......GAT.....A... ACGTCAACAAGCGTGAGTGATTCAACAAGTACA 329903 21 100.0 33 NNNNNNNNNN ..T..G.....A....GA... ACATCAACAAGTGTGAGCGATTCAACAAGTGCA 329957 21 100.0 33 NNNNNNNNNN .........GAT.....A... ACGTCAACAAGCGTGAGCGATTCAACAAGTGCA 330011 21 100.0 33 NNNNNNNNNN .........GAT.....A... ACGTCAACAAGCGTGAGTGATTCAACAAGTACA 330065 21 100.0 33 NNNNNNNNNN ..T..G.....A....GA... ACATCAACAAGTGTGAGCGATTCAACAAGTGCA 330119 21 100.0 33 NNNNNNNNNN ...........A....A.... ACGTCAACAAGCGTGAGCGATTCAACAAGTGCA 330173 21 100.0 33 NNNNNNNNNN ...........A....AT... GCGTCAACAAGTGTGAGTGACTCAACAAGTGCA 330227 21 100.0 33 NNNNNNNNNN ...........A....A.... ACATCAACAAGCGTGAGTGATTCAACAAGTACA 330281 21 100.0 33 NNNNNNNNNN ...........A....A.... ACGTCAACAAGTGTGAGTGACTCAGCAAGTGCA 330335 21 100.0 33 NNNNNNNNNN ...........A....AT... GCGTCAACAAGCGTGAGTGATTCAACAAGTGCA 330389 21 100.0 33 NNNNNNNNNN .....G.....A....GA... ACGTCAACAAGTGTGAGTGACTCAACAAGCACA 330443 21 100.0 33 NNNNNNNNNN ..T..G.....A....AA... ACAAGTACGAGTCTTTCAGACTCAGCAAGTGCA 330497 21 100.0 33 NNNNNNNNNN ...........A....AT... GCGTCAACAAGCGTGAGTGATTCAACAAGCGCA 330551 21 100.0 33 NNNNNNNNNN .....G.....A....GA... ACGTCAACAAGTGTGAGTGACTCAACAAGCACA 330605 21 100.0 33 NNNNNNNNNN ..T..G.....A....AA... ACAAGTACGAGTCTTTCAGACTCAGCAAGTGCA 330659 21 100.0 33 NNNNNNNNNN .................A... ACATCAACAAGTGTGAGTGACTCAACAAGCGCA 330713 21 100.0 33 NNNNNNNNNN ...........A....GA... ACGTCAACAAGTGAGAGTGATTCAACAAGTATG 330767 21 100.0 33 NNNNNNNNNN ...........A....GA... GAAAGTACGAGTCTTTCAGACTCATTAAGTGCA 330821 21 100.0 33 NNNNNNNNNN ...........A....GA... ACATCAACAAGTGTGAGTGACTCAACAAGTGCA 330875 21 100.0 33 NNNNNNNNNN .....G.....A....GA... ACATCAACAAGCGTGAGTGATTCAACAAGTGTA 330929 21 100.0 33 NNNNNNNNNN ..................... ACATCAACAAGTGAGAGTGACTCAACAAGCACA 330983 21 100.0 33 NNNNNNNNNN ..T......GAT.....A... ACGTCAACAAGCGTGAGTGATTCAACAAGTGCA 331037 21 100.0 33 NNNNNNNNNN ..................... ACATCAACAAGTGTGAGTGACTCAACAAGTGCA 331091 21 100.0 33 NNNNNNNNNN .................A... ACATCAACAAGTGTGAGTGACTCAACAAGTGCA 331145 21 100.0 33 NNNNNNNNNN ..................... ACATCAACAAGTGTGAGTGACTCAACAAGTGCA 331199 21 100.0 33 NNNNNNNNNN .................A... ACATCAACAAGTGTGAGTGACTCAACAAGTATG 331253 21 100.0 33 NNNNNNNNNN ...........A....GA... GAAAGTACGAGTCTTTCAGACTCATTAAGTGCA 331307 21 100.0 33 NNNNNNNNNN .........G.T.....A... ACATCAACAAGTGTGAGTGACTCAACAAGTGCA 331361 21 100.0 33 NNNNNNNNNN .....G.....A....GA... ACATCAACAAGCGTGAGTGATTCAACAAGTACA 331415 21 100.0 33 NNNNNNNNNN ...........A....A.... ACGTCAACAAGTGTGAGTGACTCAGCAAGTGCA 331469 21 100.0 33 NNNNNNNNNN ..................... ACATCAACAAGTGTGAGTGACTCAACAAGTGCA 331523 21 100.0 33 NNNNNNNNNN .................A... ACATCAACAAGTGTGAGTGACTCAACAAGTGCA 331577 21 100.0 33 NNNNNNNNNN ..................... ACATCAACAAGTGTGAGTGACTCAACAAGTGCA 331631 21 100.0 33 NNNNNNNNNN ...........A.....A..T ACATCAACAAGCGTGAGTGATTCAACAAGTACA 331685 21 100.0 33 NNNNNNNNNN ..................... ACATCAACAAGTGTGAGTGACTCAACAAGTGCA 331739 21 100.0 33 NNNNNNNNNN ..T..G.....A....GA... GCAAGTGCGAGTCTTTCAGACTCATTAAGTGCA 331793 21 100.0 33 NNNNNNNNNN .........G.T.....A... ACATCAACAAGTGTGAGTGACTCAACAAGTATG 331847 21 100.0 33 NNNNNNNNNN ...........A....GA... GAAAGTACGAGTCTTTCAGACTCATTAAGTGCA 331901 21 100.0 33 NNNNNNNNNN .........G.T.....A... ACATCAACAAGTGTGAGTGACTCAACAAGTGCA 331955 21 100.0 33 NNNNNNNNNN .....G.....A....GA... ACATCAACAAGCGTGAGTGATTCAACAAGTACA 332009 21 100.0 33 NNNNNNNNNN ...........A....A.... ACGTCAACAAGTGTGAGTGACTCAGCAAGTGCA 332063 21 100.0 33 NNNNNNNNNN ...........A....AT... GCGTCAACAAGCGTGAGTGATTCAACAAGTGCA 332117 21 100.0 33 NNNNNNNNNN .....G.....A....GA... ACGTCAACAAGTGTGAGTGACTCAACAAGCACA 332171 21 100.0 33 NNNNNNNNNN ..T..G.....A....AA... ACAAGTACGAGTCTTTCAGACTCAGCAAGTGCA 332225 21 100.0 33 NNNNNNNNNN ...........A....AT... GCGTCAACAAGCGTGAGTGATTCAACAAGTGCA 332279 21 100.0 33 NNNNNNNNNN .....G.....A....GA... ACGTCAACAAGTGTGAGTGACTCAACAAGCACA 332333 21 100.0 33 NNNNNNNNNN ..T..G.....A....AA... ACAAGTACGAGTCTTTCAGACTCAACAAGTATA 332387 21 100.0 33 NNNNNNNNNN ...........A......... ACATCAACAAGTGAGAGTGACTCAACAAGTACA 332441 21 100.0 33 NNNNNNNNNN ..T..G.....A....GA... ACATCAACAAGTGTGAGTGATTCAATAAGTAGA 332495 21 100.0 33 NNNNNNNNNN ...........A....GA... ACATCAACAAGTGTGAGTGACTCAACAAGCACA 332549 21 100.0 33 NNNNNNNNNN ..T......GAT.....A... ACGTCAACAAGCGTGAGTGATTCAACAAGTGCA 332603 21 100.0 33 NNNNNNNNNN ..................... ACATCAACAAGTGTGAGTGACTCAACAAGTGCA 332657 21 100.0 33 NNNNNNNNNN ..................... ACATCAACAAGTGTGAGTGACTCAACAAGTGCA 332711 21 100.0 33 NNNNNNNNNN .................A... ACATCAACAAGTGTGAGTGACTCAACAAGTGCA 332765 21 100.0 33 NNNNNNNNNN .................A... ACATCAACAAGTGTGAGTGACTCAACAAGTGCA 332819 21 100.0 33 NNNNNNNNNN ..................... ACATCAACAAGTGTGAGTGACTCAACAAGTGCA 332873 21 100.0 33 NNNNNNNNNN ...........A.....A..T ACATCAACAAGCGTGAGTGATTCAACAAGTACA 332927 21 100.0 33 NNNNNNNNNN ..................... ACATCAACAAGTGTGAGTGACTCAACAAGTGCA 332981 21 100.0 33 NNNNNNNNNN ..T..G.....A....GA... GCAAGTGCGAGTCTTTCAGACTCATTAAGTGCA 333035 21 100.0 33 NNNNNNNNNN .........G.T.....A... ACATCAACAAGTGTGAGTGACTCAACAAGCACA 333089 21 100.0 33 NNNNNNNNNN ..T..G.....A....AA... ACAAGTACGAGTCTTTCAAACTCAGCAAGTGCA 333143 21 100.0 33 NNNNNNNNNN ...........A....GA... ACGTCAACAAGTGTGAGTGATTCAACAAGTGCA 333197 21 100.0 33 NNNNNNNNNN .................A... ACATCAACAAGTGTGAGTGACTCAACAAGTATG 333251 21 100.0 33 NNNNNNNNNN ...........A....GA... GAAAGTACGAGTCTTTCAGACTCATTAAGTGCA 333305 21 100.0 33 NNNNNNNNNN .........G.T.....A... ACATCAACAAGTGTGAGTGACTCAACAAGTGCA 333359 21 100.0 33 NNNNNNNNNN .....G.....A....GA... ACATCAACAAGCGTGAGTGATTCAACAAGTACA 333413 21 100.0 33 NNNNNNNNNN ...........A....A.... ACGTCAACAAGTGTGAGTGACTCAGCAAGTGCA 333467 21 100.0 33 NNNNNNNNNN ...........A....AT... GCGTCAACAAGCGTGAGTGATTCAACAAGTGCA 333521 21 100.0 33 NNNNNNNNNN .....G.....A....GA... ACGTCAACAAGTGTGAGTGACTCAACAAGCACA 333575 21 100.0 33 NNNNNNNNNN ..T..G.....A....AA... ACAAGTACGAGTCTTTCAGACTCAGCAAGTGCA 333629 21 100.0 33 NNNNNNNNNN ...........A....AT... GCGTCAACAAGCGTGAGTGATTCAACAAGCGCA 333683 21 100.0 33 NNNNNNNNNN .....G.....A....GA... ACATCAACAAGTGTGAGTGACTCAACAAGTGCA 333737 21 100.0 33 NNNNNNNNNN .....G.....A....GA... ACATCAACAAGCGTGAGTGATTCAACAAGTACA 333791 21 100.0 33 NNNNNNNNNN ...........A......... ACATCAACAAGTGAGAGTGACTCAACAAGTACA 333845 21 100.0 33 NNNNNNNNNN ..T..G.....A....GA... ACATCAACAAGTGTGAGTGATTCAATAAGTGGA 333899 21 100.0 33 NNNNNNNNNN ...........A....GA... ACATCAACAAGTGTGAGTGACTCAACAAGCACA 333953 21 100.0 33 NNNNNNNNNN ..T......GAT.....A... ACGTCAACAAGCGTGAGTGATTCAACAAGTGCA 334007 21 100.0 33 NNNNNNNNNN ..................... ACATCAACAAGTGTGAGTGACTCAACAAGTGCA 334061 21 100.0 33 NNNNNNNNNN ..................... ACATCAACAAGTGTGAGTGACTCAACAAGTGCA 334115 21 100.0 33 NNNNNNNNNN ..T..G.....A....GA... GCAAGTGCGAGTCTTTCAGACTCATTAAGTGCA 334169 21 100.0 33 NNNNNNNNNN .........G.T.....A... ACATCAACAAGTGTGAGTGACTCAACAAGCACA 334223 21 100.0 33 NNNNNNNNNN ..T..G.....A....AA... ACAAGTACGAGTCTTTCAAACTCAGCAAGTGCA 334277 21 100.0 33 NNNNNNNNNN ...........A....GA... ACGTCAACAAGTGTGAGTGATTCAACAAGTGCA 334331 21 100.0 33 NNNNNNNNNN .................A... ACATCAACAAGTGTGAGTGACTCAACAAGCACA 334385 21 100.0 33 NNNNNNNNNN ..T..G.....A....AA... ACAAGTACGAGTCTTTCAGACTCAGCAAGTGCA 334439 21 100.0 33 NNNNNNNNNN ...........A....AT... GCGTCAACAAGCGTGAGTGATTCAACAAGCGCA 334493 21 100.0 33 NNNNNNNNNN .....G.....A....GA... GAAAGTACGAGTCTTTCAGACTCAGCAAGTGCA 334547 21 100.0 33 NNNNNNNNNN .................A... ACATCAACAAGTGTGAGTGACTCAACAAGCACA 334601 21 100.0 33 NNNNNNNNNN ..T......GAT....TA... ACGTCAACAAGCATGAGTGATTCAACAAGTATG 334655 21 100.0 33 NNNNNNNNNN ...........A....GA... ACATCAACAAGTGTGAGTGACTCAACAAGTGCA 334709 21 100.0 33 NNNNNNNNNN .....G.....A....GA... ACATCAACAAGCGTGAGTGATTCAACAAGTGTA 334763 21 100.0 33 NNNNNNNNNN ..................... ACATCAACAAGTGAGAGTGACTCAACAAGTACA 334817 21 100.0 33 NNNNNNNNNN ..T..G.....A....GA... ACATCAACAAGTGTGAGTGATTCAACAAGTGCA 334871 21 100.0 33 NNNNNNNNNN ...........A....GA... ACATCAACAAGTGTGAGTGACTCAACAAGCACA 334925 21 100.0 33 NNNNNNNNNN ..T......GAT.....A... ACGTCAACAAGCGTGAGTGATTCAACAAGTGCA 334979 21 100.0 33 NNNNNNNNNN ..................... ACATCAACAAGTGTGAGTGACTCAACAAGTGCA 335033 21 100.0 33 NNNNNNNNNN .................A... ACATCAACAAGTGTGAGTGACTCAACAAGTGCA 335087 21 100.0 33 NNNNNNNNNN ..................... ACATCAACAAGTGTGAGTGACTCAACAAGTGCA 335141 21 100.0 33 NNNNNNNNNN ...........A.....A... ACATCAACAAGCGTGAGTGATTCAACAAGTACA 335195 21 100.0 33 NNNNNNNNNN .A...............A... ACATCAACAAGTGTGAGTGACTCAACAAGTGCA 335249 21 100.0 33 NNNNNNNNNN ..................... ACATCAACAAGTGTGAGTGACTCAACAAGTGCA 335303 21 100.0 33 NNNNNNNNNN ...........A.....A..T ACATCAACAAGCGTGAGTGATTCAACAAGTACA 335357 21 100.0 33 NNNNNNNNNN ..................... ACATCAACAAGTGTGAGTGACTCAACAAGTGCA 335411 21 100.0 33 NNNNNNNNNN ..T..G.....A....GA... GCAAGTGCGAGTCTTTCAGACTCATTAAGTGCA 335465 21 100.0 33 NNNNNNNNNN .........G.T.....A... ACATCAACAAGTGTGAGTGACTCAACAAGCACA 335519 21 100.0 33 NNNNNNNNNN ..T..G.....A....AA... ACAAGTACGAGTCTTTCAAACTCAGCAAGTGCA 335573 21 100.0 33 NNNNNNNNNN ...........A....GA... GCAAGTGCGAGTCTTTCAGACTCATTAAGTGCA 335627 21 100.0 33 NNNNNNNNNN .........G.T.....A... ACATCAACAAGTGTGAGTGACTCAACAAGCACA 335681 21 100.0 33 NNNNNNNNNN ..T..G.....A....AA... ACAAGTACGAGTCTTTCAGACTCAGCAAGTGCA 335735 21 100.0 33 NNNNNNNNNN ...........A....AT... GCGTCAACAAGCGTGAGTGATTCAACAAGCGCA 335789 21 100.0 33 NNNNNNNNNN .....G.....A....AA... ACGTCAACAAGTGTGAGTGACTCAACAAGCACA 335843 21 100.0 33 NNNNNNNNNN ..T..G.....A....GA... GAAAGTACGAGTCTTTCAGACTCAGCAAGTGCA 335897 21 100.0 33 NNNNNNNNNN .................A... ACATCAACAAGTGTGAGTGACTCAACAAGCACA 335951 21 100.0 33 NNNNNNNNNN ..T......GAT....TA... ACGTCAACAAGCATGAGTGATTCAACAAGTATG 336005 21 100.0 33 NNNNNNNNNN ...........A....GA... ACATCAACAAGTGTGAGTGACTCAACAAGTGCA 336059 21 100.0 33 NNNNNNNNNN .....G.....A....GA... ACATCAACAAGCGTGAGTGATTCAACAAGTGTA 336113 21 100.0 33 NNNNNNNNNN ..................... ACATCAACAAGTGAGAGTGACTCAACAAGTACA 336167 21 100.0 33 NNNNNNNNNN ..T..G.....A....GA... ACATCAACAAGTGTGAGTGATTCAATAAGTGGA 336221 21 100.0 33 NNNNNNNNNN ...........A....GA... ACATCAACAAGTGTGAGTGACTCAACAAGCACA 336275 21 100.0 33 NNNNNNNNNN ..T......GAT.....A... ACGTCAACAAGCGTGAGTGATTCAACAAGTGCA 336329 21 100.0 33 NNNNNNNNNN ..................... ACATCAACAAGTGTGAGTGACTCAACAAGTGCA 336383 21 100.0 33 NNNNNNNNNN .................A... ACATCAACAAGTGTGAGTGACTCAACAAGTGCA 336437 21 100.0 33 NNNNNNNNNN ..................... ACATCAACAAGTGTGAGTGACTCAACAAGTGCA 336491 21 100.0 33 NNNNNNNNNN ...........A.....A..T ACATCAACAAGCGTGAGTGATTCAACAAGTACA 336545 21 100.0 33 NNNNNNNNNN ..................... ACATCAACAAGTGTGAGTGACTCAACAAGTGGA 336599 21 100.0 33 NNNNNNNNNN ...........A.....A..T ACATCAACAAGCGTGAGTGATTCAACAAGTACA 336653 21 100.0 33 NNNNNNNNNN ..................... ACATCAACAAGCGTGAGTGACTCAACAAGTATG 336707 21 100.0 33 NNNNNNNNNN ...........A....GA... ACATCAACAAGTGTGAGTGACTCAACAAGTGCA 336761 21 100.0 33 NNNNNNNNNN .....G.....A....GA... ACATCAACAAGCGTGAGTGATTCAACAAGTACA 336815 21 100.0 33 NNNNNNNNNN ..................... ACGTCAACAAGTGTGAGTGACTCAACAAGCACA 336869 21 100.0 33 NNNNNNNNNN ...........A....GA... ACGTCAACAAGTGTGAGTGATTCAACAAGTGCA 336923 21 100.0 1 NNNNNNNNNN ..........CA....AA... NNNNNNNNNN ========== ====== ====== ====== ========== ===================== 162 21 32 AGCACATCATTGAGTGCGTCA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.38%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [130-153] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [2135,877] Score: 0.18/0.18 # # Final direction: F [0.59,0 Confidence: HIGH] >NC_007181 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 1825971 25 96.0 36 TAATTGCCGT ..........T.............. AGAGTCCCCTTCAACATAAAACCTAACTTGGTTTGG 1826032 25 100.0 38 CTTGGTTTGG ......................... ATTATCGACTCCCTAGACGTTCACATAAGCGACAAGAT 1826095 25 100.0 37 GCGACAAGAT ......................... TAGCTCTAGCAGGAGAAGAGGCTAATGTTAGCAGAGC 1826157 25 100.0 41 TTAGCAGAGC ......................... TGCGGAAATATGGAAAGAAGTATTATGAAAAAAGGAGAAAA 1826223 25 100.0 36 AAGGAGAAAA ......................... TCTCGTATGACTTGCTGTCCAATGACATAATAAACT 1826284 25 100.0 38 ATAATAAACT ......................... CTGTCATTAGCACAGGCTGGCATACTTTATTTATACCC 1826347 25 100.0 37 ATTTATACCC ......................... AAAGTTCTAGTCAGCCAGCACCTGAAAATAGGGTGCT 1826409 25 100.0 39 ATAGGGTGCT ......................... GAGTTTAAAAAGCTTTAAACAGTACGCAAACGATTTGAG 1826473 25 100.0 42 ACGATTTGAG ......................... TATGAACTAACAGATAAAGGGAAGAGAAGTGTTCCCAAAACT 1826540 25 100.0 39 TCCCAAAACT ......................... CTTTAAGATTGAGCTTGACAAATATTTCTGTGAACAGAG 1826604 25 100.0 GTGAACAGAG ......................... TGGTTTGTTT ========== ====== ====== ====== ========== ========================= 11 25 38 CTTTCAATCCCTTTTGGGATTCATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: R [matched GATTAATCCCAAAAGGAATTGAAAG with 92% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-6.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [357,445] Score: 0/0.18 # # Final direction: R [0.37,5.41 Confidence: HIGH] >NC_007181 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 1650669 24 100.0 36 TTTACATGGA ........................ ATCATTGGAATTGGGCTAGCCCTATTTTTCTTGATA 1650729 24 100.0 35 TTTCTTGATA ........................ AGTTGGTAGTGGGCAGATATCTAGCCCTGACCACT 1650788 24 100.0 36 CCTGACCACT ........................ TGATGTCGAATACCGGAGTCAAGATGTTGATGAAAA 1650848 24 100.0 37 TTGATGAAAA ........................ AAATAACGAAGATTTAAGTGGTTTTGAACCAAGAGAA 1650909 24 100.0 37 ACCAAGAGAA ........................ TGATCACATGTTTTATCGGTAGTACATAATGTAGAAA 1650970 24 100.0 35 AATGTAGAAA ........................ GAGGAGTTTGATAAACTTTTGGAATTTCTTGAGAG 1651029 24 100.0 34 TTCTTGAGAG ........................ GAAATATAGCAAGAGTTCTGTGGTCGCTATATTA 1651087 24 100.0 37 CGCTATATTA ........................ ATCATTAGCACGATATTTCATCATCACTGCAGTAATC 1651148 24 100.0 35 TGCAGTAATC ........................ CTCAAAAATATAATGCGTAAGCTTAAATACCCAAC 1651207 24 100.0 36 AATACCCAAC ........................ TTTTTATTCTATATTTGAATAAAGCATAAAGTAATC 1651267 24 100.0 35 TAAAGTAATC ........................ CTAATATTAATGGCAGTAGAAGTCTCGAACAACAC 1651326 24 100.0 35 CGAACAACAC ........................ TATCTCGCAATAAATGAGAGAGAGTCGGCGAGTGT 1651385 24 100.0 37 CGGCGAGTGT ........................ TATGTTTGTTGTATTGCTAGCGTAATATTGTATTACA 1651446 24 100.0 36 TTGTATTACA ........................ ACACAATATCTTAGTCATTACTGGAATGACTACAAC 1651506 24 100.0 37 TGACTACAAC ........................ ATCATTAGCACGATATTTCATCATCACTGCAGTAATC 1651567 24 100.0 35 TGCAGTAATC ........................ TGTAGTAAATTGATATAATCGGATTGAAGAGAGTG 1651626 24 100.0 34 GAAGAGAGTG ........................ AGGGATATCTGGAAGTAATACACCAGTACTATAC 1651684 24 100.0 37 AGTACTATAC ........................ GCCATTCAACTCAAAACTTATAGAAGATTACGAAATA 1651745 24 100.0 37 TTACGAAATA ........................ CCAAATGCTAAAAATAGAAAAGGTAGGAGAGTTATTA 1651806 24 100.0 37 AGAGTTATTA ........................ CGGTCTTCCAAAATTACTTAATGCTCTTGATAATAAA 1651867 24 95.8 37 TGATAATAAA ......................G. TAAGGCTAATTTTGATCGATAAAGATGAAGAAGAAAG 1651928 24 100.0 38 AAGAAGAAAG ........................ TATCTAACCCTCTCTTTTTCAACTCTTTGAAGATAAAA 1651990 24 100.0 37 GAAGATAAAA ........................ CCTCCCTGATATTCACCTTCTCCATTTCCTGTAGCAA 1652051 24 100.0 36 CCTGTAGCAA ........................ ACCAACTCTCAATTACTCATAATATTCAAACTAAAT 1652111 24 100.0 35 CAAACTAAAT ........................ ATTCCGACTTGCTTAAATTCAGCTTTTTTGTACAA 1652170 24 100.0 35 TTTTGTACAA ........................ ACAGTAGTAGCTCCGGCTGTCATTCCTAATAATAT 1652229 24 100.0 34 CTAATAATAT ........................ AAATGATATAAAAAATGAACAACAGAATATAAAA 1652287 24 100.0 38 GAATATAAAA ........................ AACAAGAATTGATGAAGTATTCAAAAGAGCGATATGAA 1652349 24 100.0 39 GCGATATGAA ........................ CTTTCAGAGGGCGAGATCGCAGAGTACTTGAGAATAGCG 1652412 24 100.0 35 GAGAATAGCG ........................ ATTTCTGCAAATGTATAATACATCAATTTTATAAT 1652471 24 100.0 35 ATTTTATAAT ........................ GCATCAGCAATTATGGAAGTCGCTAGATATTACTA 1652530 24 100.0 39 GATATTACTA ........................ AGGAATGTGTACAACAGCTATAAAAAAAGAAAGAATTGT 1652593 24 100.0 36 AAAGAATTGT ........................ TTTGGAATATCTTGCGAGGCGAGGGTGAGTGAACCT 1652653 24 100.0 35 GAGTGAACCT ........................ AATAAAAGGAGATTTCATAGACTCTATTCTCAAAA 1652712 24 100.0 36 ATTCTCAAAA ........................ TTGTTCTAGAAGTGGCGCATTAAACGGCAGTTTTTG 1652772 24 100.0 37 GCAGTTTTTG ........................ GAGAGACAAAATTTCCAAGTAAGTGACTCTGAAAATT 1652833 24 100.0 37 TCTGAAAATT ........................ AATATACGCTGCATAATATACGCTCTCTTACGCTAAG 1652894 24 100.0 38 TTACGCTAAG ........................ AGAGTGGCATACCTTATTTGTTTTGTTGAGTTATGAAG 1652956 24 100.0 35 AGTTATGAAG ........................ TTCCATTTTCTTCATAAGTAGCATCTCTCAACAAT 1653015 24 100.0 33 TCTCAACAAT ........................ ATAACAATTGTCGGTAACTTATTTAGACGCTTA 1653072 24 100.0 37 TAGACGCTTA ........................ TTTGATACGATTACAATAAAGTTCACTTAAAGTAGAC 1653133 24 100.0 34 TAAAGTAGAC ........................ AAAGTCTATTTTTATTTTATCTTTATCTATCAGC 1653191 24 100.0 37 ATCTATCAGC ........................ ATTGGATAGTCAGTACCAAAAGGTACATTAAGCCACT 1653252 24 100.0 36 TTAAGCCACT ........................ ATCATTAATAGAATACGAAAAGCTAAAAGCAAAAAA 1653312 24 100.0 37 AAGCAAAAAA ........................ ATGTAGATAACATCACTATATTGATAAAGAGACTCGT 1653373 24 100.0 34 AGAGACTCGT ........................ AAAATCATTGAACTATAATGTAGATCTTGCAGTA 1653431 24 100.0 35 TCTTGCAGTA ........................ TTTCCAGCCCAGCCTCTTTGCAGCTTCTAGCCTAT 1653490 24 100.0 36 TCTAGCCTAT ........................ ATCTAGTGAGACAAAAAGAACCTCAGTCTCAGAGTT 1653550 24 100.0 37 TCTCAGAGTT ........................ TTCCTTATACACATCAAGTAACACAGGCGAGTTCATC 1653611 24 100.0 36 CGAGTTCATC ........................ TGCGGGATACTACTTCGCCCCAAGTTCTGTAAAGAC 1653671 24 100.0 34 CTGTAAAGAC ........................ TGGTGAACTGGTACAGATACATCCTTATGAAGAA 1653729 24 100.0 37 TTATGAAGAA ........................ CCATTACTGGACAAAGACTATGTCATCACAGCTGGTG 1653790 24 100.0 36 ACAGCTGGTG ........................ TTAACACTGGTTGAATTCGCAAGGAAAGTGATAGGT 1653850 24 100.0 37 AGTGATAGGT ........................ AGATATTTAGCGTTAAAACTGCAGGAGACAGGGGCAC 1653911 24 100.0 34 ACAGGGGCAC ........................ AAGTTTTTGATATCTGTCCCTGCAGTGTCTAGTG 1653969 24 100.0 40 GTGTCTAGTG ........................ CTTCATACTCATACCAATTGTAAGTGTTTCCTTGTGTTGA 1654033 24 100.0 35 CTTGTGTTGA ........................ TCTTGGAAAGACCTTAAAAAAAGGATTGATTTATT 1654092 24 100.0 35 TTGATTTATT ........................ TCGCATGCCTTAAATCGATCGTTTTCTCTACATCT 1654151 24 100.0 38 CTCTACATCT ........................ TACGCTCCATGCCCAGCTGTGCTCTCATCAACACATAG 1654213 24 100.0 35 CAACACATAG ........................ GCGAGAAAGACTTCTACTGGGGCGCCGAATTTAAC 1654272 24 100.0 36 CGAATTTAAC ........................ ATCGCTGAGATCCTAGCGACTTTCTACCTGCCCGAT 1654332 24 100.0 34 CCTGCCCGAT ........................ CGCTAAAGAACGCCCTAAGGGAAGCCTTCAAATA 1654390 24 100.0 35 CCTTCAAATA ........................ TATCGCCTCACGCCATCTCTTTGGCGTGGTATAAT 1654449 24 100.0 38 GTGGTATAAT ........................ AAGTCGCAAAAGAACTGCTAGACAAATTTGACAGTGAA 1654511 24 100.0 38 TGACAGTGAA ........................ TGACTTATTTTTTGTCTTAACTTCACTACTCATTTTCT 1654573 24 100.0 36 CTCATTTTCT ........................ AAAGAACTCATTATCTTTAAGGACAAAGTCAGGGGT 1654633 24 100.0 36 AGTCAGGGGT ........................ TTCCCCTGCGGATACTTCTGCCTCAATTTGGTCACA 1654693 24 100.0 35 TTTGGTCACA ........................ AAACCTTTTCAGAGGCTTACCTCATCAATGTGGAA 1654752 24 100.0 34 CAATGTGGAA ........................ AAAGAAAAAGAAAAGGCGGGGGCGAGGGCATGGA 1654810 24 100.0 35 AGGGCATGGA ........................ TCTGTGTAACGTATCAGCAATGCGCTTTGTTATAT 1654869 24 100.0 34 TTTGTTATAT ........................ GCGGATTTCCACTGTTTCCAGCCTGAGCTTGGGC 1654927 24 100.0 36 GAGCTTGGGC ........................ AGCAAATTTTTAACAAATGTATTCCATTCTTGAAGT 1654987 24 100.0 36 TTCTTGAAGT ........................ AATTTTATAATGTCTGTAAAACTAAAACATTGTTTT 1655047 24 100.0 41 ACATTGTTTT ........................ AAGGGATCTAGCCTGGCTAGAGAGCTTGCCGCTTTAATTAA 1655112 24 100.0 36 CTTTAATTAA ........................ ATGGGTGCACCACCAGAAGTAGTAGAAGAGGTCGAG 1655172 24 100.0 36 AGAGGTCGAG ........................ TGTATTGCCCACAATGTCCCGTTTTCGTTGTACAGG 1655232 24 100.0 35 GTTGTACAGG ........................ CAAGAGAAAGGAGCTAGGAAGAGGATCTTTTCCCT 1655291 24 100.0 36 TCTTTTCCCT ........................ ATTAGGACTCGAAAAATTTATATAAAAAAAGACATT 1655351 24 100.0 37 AAAAGACATT ........................ TTCTCATCAACATTTGCTGTACAAATTTCATAATCAT 1655412 24 100.0 37 TCATAATCAT ........................ ACCAGTCTTACTCAACAAGTCAGCCCTTACTTATAAT 1655473 24 100.0 35 TACTTATAAT ........................ CTCAGTCAGATACGTCTTCTTTAGCTGGCTTATGT 1655532 24 100.0 35 TGGCTTATGT ........................ ATCGAGTGGAAGGCGTTAGACCCAGTAGCTGCCGC 1655591 24 100.0 34 TAGCTGCCGC ........................ AGCCTGGATCTGAAGAAACATAACCATGAGATAT 1655649 24 100.0 34 CATGAGATAT ........................ AGGTCAGGAATATAGATTATTCGTACTTTGCTAT 1655707 24 100.0 34 ACTTTGCTAT ........................ AAGTCTTCAGAAAATCATCAACACGCATATACTG 1655765 24 100.0 34 GCATATACTG ........................ TTTGATTAAAATGGGTTGGTATGGCATAAAAAAT 1655823 24 100.0 40 CATAAAAAAT ........................ ATCGGAATTATAGGCGGATTTTTAACAATATTCCTAACAT 1655887 24 100.0 33 TTCCTAACAT ........................ GGAGACAAAGTTTGTCTGTGCAATATATCCCAA 1655944 24 100.0 34 TATATCCCAA ........................ AGAAAGAGGAACATAAGGTCTAGATCTTACCCAA 1656002 24 100.0 35 TCTTACCCAA ........................ TAATTCATCTTTATAGTGTAACTTTTTGAAATAAA 1656061 24 100.0 39 TTGAAATAAA ........................ AACTAAGAAAAATTCAGTCAGCAGTATTAACTACTACTA 1656124 24 100.0 36 ACTACTACTA ........................ TACACCAGTGAGAATGTCTTCCCGAAACTACAAGAA 1656184 24 100.0 35 ACTACAAGAA ........................ AATTGGCAACTAAGAAGTTTGTACAAATAACATAA 1656243 24 100.0 35 AATAACATAA ........................ GAATAGGGGATGCGATAAACCAGTTAGCACAACAA 1656302 24 100.0 35 AGCACAACAA ........................ GGCATATAGAATTTTTCGCTTTGTTGCCTCTTTAA 1656361 24 100.0 35 GCCTCTTTAA ........................ ATTCAATTTTTTTCGTTTTGTCGGTGAAAATAAAA 1656420 24 100.0 34 GAAAATAAAA ........................ GCTTGTGGTAACTATTCCATCGTCATCAGCAATC 1656478 24 100.0 37 ATCAGCAATC ........................ AACGCATTATTGCTAATGCACGGTGCTAACAATCTAG 1656539 24 100.0 35 AACAATCTAG ........................ GTTTAAAACGGTAAATAGATAAAACCAAGAAAATG 1656598 24 100.0 35 CAAGAAAATG ........................ ACGTCTTGTGCTGACTTGTAAACATCGCTGTTCTT 1656657 24 100.0 34 CGCTGTTCTT ........................ AAAGAAGTGCAAAAAAATGGCTACGGTGTACATT 1656715 24 100.0 34 GGTGTACATT ........................ ATGCATTCATTAAAGACTTAACAATTCAAGAGTT 1656773 24 100.0 34 TTCAAGAGTT ........................ AAGTTTCTTAATTTATTACAGTTATATGAACAGC 1656831 24 100.0 36 TATGAACAGC ........................ ACAATAGCCCGCAAATGTCAGTATCATCACGTTGTT 1656891 24 100.0 36 TCACGTTGTT ........................ AGATTTTATGAAACATTAACTATTTATTTTATCTAT 1656951 24 100.0 36 TTTTATCTAT ........................ ATTAATCAGATAGAAACTAGCAGTGTTTTTTATGTT 1657011 24 100.0 36 TTTTTATGTT ........................ ACCTTCACTTATTGAAGATGGGGCTGAAACAACTTT 1657071 24 100.0 35 AAACAACTTT ........................ TTGGTTACTGATATTTTCTGAACTCCAGCAAATGT 1657130 24 100.0 35 CAGCAAATGT ........................ CGTTAAACAGACTAGGCTCAGGACAAGCATTCACT 1657189 24 100.0 35 AGCATTCACT ........................ AGCCCAAATCTGTTATCTCTTTAGAATGAAATTTT 1657248 24 100.0 36 ATGAAATTTT ........................ AGAGTACCTTTACCTAACCAGAGCGTCGTATATTAT 1657308 24 100.0 35 CGTATATTAT ........................ TGTAGTCTTGCGCAATACCTGCGCTCTTTAGCAGT 1657367 24 100.0 34 CTTTAGCAGT ........................ AGAAGCTATACAACGAGGCTATATAAATAAAATG 1657425 24 100.0 35 AAATAAAATG ........................ GTGAAGATGTCGATAGTGACGATAGCTGAGATAGT 1657484 24 100.0 38 CTGAGATAGT ........................ AAAGTAAGCCCGATAGTCCTTAGGTCAGGATCCCTTTA 1657546 24 100.0 34 GATCCCTTTA ........................ TATATTTGGTCAAGTGTTTCTACAGCATTTTAAT 1657604 24 100.0 35 GCATTTTAAT ........................ GCAGAGTCTTTCGCTACGTCTTTCAGCGTCTCAAA 1657663 24 100.0 37 GCGTCTCAAA ........................ GATCACAGTAATGCGTTATATAAAAAGGCAGAATTCA 1657724 24 100.0 37 GCAGAATTCA ........................ CTTTGATCAATTACTAAATTCTGTAATTGTGCCTCTA 1657785 24 100.0 36 TGTGCCTCTA ........................ GTAGAAAGTCATAACCCAAAACTTCATTTTTTTGTT 1657845 24 100.0 35 TTTTTTTGTT ........................ ACAGGCTGTACCAAGCTGTTAGCGATGTAGTTAAT 1657904 24 100.0 35 TGTAGTTAAT ........................ AGCTCCCATTAAAATCACGACCACTCCAAATATCA 1657963 24 100.0 36 CCAAATATCA ........................ AGTTATAATCTATCTCCGGAACATTAAAATATTTTA 1658023 24 100.0 35 AAATATTTTA ........................ ATAGTTGGTGGGACGGAATGGAGAAACAGCTAAAA 1658082 24 100.0 39 ACAGCTAAAA ........................ TATAAAAAAGCATTTGCACAGTCTTGGAAACCACTATTT 1658145 24 100.0 36 ACCACTATTT ........................ ATGCTCGCCCACCAGCACACCGGACAGATCGACATA 1658205 24 100.0 42 GATCGACATA ........................ AACTGAAGGAACCTTGTAGAGCGGTATGCTTTGCTTCTTCTC 1658271 24 100.0 37 GCTTCTTCTC ........................ AACTGGAGCAACGTATTGTTGAATATAGCCCCTATGA 1658332 24 100.0 34 GCCCCTATGA ........................ AATGAGATATTCACTGAGGTCATGGAGCGTGAAA 1658390 24 100.0 39 GAGCGTGAAA ........................ TTTCCTTATTTTTTAACGAGGGAAATGGTCAGGCTAAAA 1658453 24 100.0 32 CAGGCTAAAA ........................ TACGGTAAACTGGGGAGTTAACTCAGCATCCA 1658509 24 100.0 38 TCAGCATCCA ........................ CTTTCGCATACTTCCTCGCCCTCCTTGAGATATTTTCT 1658571 24 100.0 GATATTTTCT ........................ TGATCCTTGC ========== ====== ====== ====== ========== ======================== 133 24 35 GTTTTAGTTTCTTGTCGTTATTAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.83%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [261,1085] Score: 0.18/0.18 # # Final direction: R [0,0.59 Confidence: HIGH] >NC_007181 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 1670962 24 100.0 36 CCAACGATCA ........................ ATCTTCTCTGTCCTCTACTACTTTCTGCTCTTCTTT 1671022 24 100.0 36 GCTCTTCTTT ........................ TGAAAAGTTCATAAAAAAGTACCCTAACGTAGAACA 1671082 24 100.0 34 ACGTAGAACA ........................ AATTTTATGATATCGCTTTTGTTCAAGGAAACAT 1671140 24 100.0 39 AAGGAAACAT ........................ AATTCTAAGTGCACAAGAAGGACTAGAAGAGGCAGGCCT 1671203 24 100.0 34 AGGCAGGCCT ........................ TAATGCCCAGTAACATAGATGCCTCCTTGATTAT 1671261 24 100.0 35 CCTTGATTAT ........................ AATTTGGATTGACGTCACCTCAAGATCTATTACCT 1671320 24 100.0 36 TCTATTACCT ........................ ATATTTAAGCCTTACTCTTTACATTAAAAGTAACAA 1671380 24 100.0 35 AAAGTAACAA ........................ TCGACGTTAGTCTTAGATTTTTATCATTTTTAGGT 1671439 24 100.0 34 ATTTTTAGGT ........................ TTGTGCTCTTTAATGTCAAACAGTGTGATCTATT 1671497 24 100.0 35 GTGATCTATT ........................ ACAGTGCATGAAGTAGCATCATATGTCGTAAGTGA 1671556 24 100.0 36 TCGTAAGTGA ........................ TCTCTGGGTTAAGTGCAAAGAGCACTGGGATTACAA 1671616 24 100.0 34 GGGATTACAA ........................ CAACAAGGCTGAGAAGATAGCAAAGAAGCTAGTA 1671674 24 100.0 38 GAAGCTAGTA ........................ TACAATAATTTCAGATTTCCAGTAAATGATACAAATTC 1671736 24 100.0 36 ATACAAATTC ........................ TTGTCATTAAACTGACAACTTTGTCTCTGACCCAAA 1671796 24 100.0 34 CTGACCCAAA ........................ AGTAGCGGTATACAAAAATGTATTTGTTGTGATA 1671854 24 100.0 34 TGTTGTGATA ........................ TGGCTCACAGGCATTAATACCTGCAAAGCCTAGG 1671912 24 100.0 39 AAAGCCTAGG ........................ AAAAGTTTGCCAATTTAGGTGCTGTGCAGGAAGCATTTA 1671975 24 100.0 34 GAAGCATTTA ........................ GAATAATTGTAGATCAGCCATCAACTTCCACACG 1672033 24 100.0 36 CTTCCACACG ........................ AGAAAATGAGTAGTGAGATAAAGACAAAAAATAAGT 1672093 24 100.0 39 AAAAATAAGT ........................ AATTTCTATATAATCCAAGAGACACAGAGAGGTTTCTAC 1672156 24 100.0 37 AGGTTTCTAC ........................ TACATTACTTTTAGAAATATAGTATGAGCGTAACATA 1672217 24 100.0 33 GCGTAACATA ........................ CAGTACACAAAGTGGATAGGAAAAGTCAACAAT 1672274 24 100.0 36 AGTCAACAAT ........................ ATCGTATATTATATTGGGGCAGAAAAAATGAATGAT 1672334 24 100.0 34 AATGAATGAT ........................ CAGGTTCAATTTCAGTAAATAATGGCATTACAAT 1672392 24 100.0 38 GCATTACAAT ........................ AACATCAGACTTTTGCACTTTTATTAGAAGGCTTTGGA 1672454 24 100.0 34 AGGCTTTGGA ........................ GATACATTGCATATATTGGCAATCAGCAATACAA 1672512 24 100.0 36 AGCAATACAA ........................ ACTATATATTGTTTGGAGCTTATCATAAACTTCATC 1672572 24 100.0 34 AAACTTCATC ........................ CTGAATAGAGAGATGATAGAAGAAACGGTAAGTA 1672630 24 100.0 39 ACGGTAAGTA ........................ TCAGCCTCTAATTCTGCTGCAACTTCCATCAATTTCCTT 1672693 24 100.0 39 CAATTTCCTT ........................ ATTAATTCCAAAGGACATTGAGAAGAAATTTGGCTTAAA 1672756 24 100.0 37 TTGGCTTAAA ........................ ATATGAGCAACAGCAACTCAAATCTTTATATGAAGTC 1672817 24 100.0 34 ATATGAAGTC ........................ CACCAAAGAGTTTTTGTCCAAAGCCTTTTATGGA 1672875 24 100.0 37 CTTTTATGGA ........................ CAGTCTCAATGTCTTTATGAGACAATTCTATATCCAA 1672936 24 100.0 36 CTATATCCAA ........................ GCACTTCTACTTGCTTAACGCTATAGCAAGCAAGAA 1672996 24 100.0 38 CAAGCAAGAA ........................ GTTCATCAACCTCATGCTGAGTAAGACTATTAGTATGT 1673058 24 100.0 36 ATTAGTATGT ........................ CTCGTATTCGTAAAAGCCCTCGTGGGTGGTGACGAT 1673118 24 95.8 35 TGGTGACGAT .......................A CTTTACAACTAATTTTTTCAGGAAAACAAATTGAA 1673177 24 100.0 34 ACAAATTGAA ........................ TATGTCTTAGATAGTTGAAAAAGCTAAAGCTTTT 1673235 24 100.0 36 TAAAGCTTTT ........................ GAATGTGTCCCCCTAGAGGTTTTCACCAAACAACCA 1673295 24 100.0 36 CAAACAACCA ........................ AAAAAACCTTTAACCTCTATCGAATGCTGTCAAAAA 1673355 24 100.0 35 CTGTCAAAAA ........................ AACGTTACGACCACTACTACTCAGAAGAAGATAGT 1673414 24 100.0 37 AGAAGATAGT ........................ GAGGGATGAAGGCAAATCAGTATCAGCAATAGTAGAG 1673475 24 100.0 35 AATAGTAGAG ........................ GAAGTAGAACAGCTGTTTTTCAGGATTGAAATTAT 1673534 24 100.0 39 TTGAAATTAT ........................ AAGAGAATACTTTCTCGCCTCAGCAAGAATCGTATCAAT 1673597 24 100.0 35 TCGTATCAAT ........................ GTATGTGGGAGAGCTTTATGAGTGGTAAGACACAC 1673656 24 100.0 33 TAAGACACAC ........................ ATGCAGGTACTATACTGAGCCTGATGAACAGCA 1673713 24 100.0 34 ATGAACAGCA ........................ AAATTTAAGGAAAATGGAGTGTATGTATATAAAT 1673771 24 100.0 35 GTATATAAAT ........................ CTCAATTATTTTCAATGCTTTTTCTTTTTCGTTGT 1673830 24 100.0 36 TTTTCGTTGT ........................ ACATCAGCACTTATGGATACTACGCCATGCTCATCT 1673890 24 100.0 35 ATGCTCATCT ........................ ACTATTACTTTTGAAAATATGTAGATAAGACTGGT 1673949 24 100.0 34 TAAGACTGGT ........................ TTACAGTTGTTCCGTTAGGAAGTATATAGTTACT 1674007 24 100.0 37 TATAGTTACT ........................ AAAATAATCATAAAACCCGAGCATTACGAAGAATTGA 1674068 24 95.8 37 GAAGAATTGA .......T................ TGTAAAGGACTTCTTAAAAAGGTTAGAGGGGTTTCTC 1674129 24 95.8 35 GGGGTTTCTC .......T................ GTAATTATTCTGATGGGTGCTATAATCTCGATGGC 1674188 24 100.0 35 TCTCGATGGC ........................ AGCGATTAGTTTAGTCGAATTAGCTATTGCGACTT 1674247 24 95.8 34 ATTGCGACTT ...........G............ ATGGGATCCTGATAATTCGGCATCAGCACAATTC 1674305 24 100.0 35 AGCACAATTC ........................ CTCTTCATTTGTCTCGTGAAATATAGGGTTTTTCA 1674364 24 95.8 35 GGGTTTTTCA ...........G............ ATAGGGTAGTTCACAAAGAGCCAGCCCTCGTCAAC 1674423 24 100.0 35 CCTCGTCAAC ........................ CTTTACGTAGTAGTTATAGAGCTTCGTTACGTGCT 1674482 24 100.0 38 GTTACGTGCT ........................ CTTGAACCATTGAACCTGCGATTGCAGGGATTAAGTAT 1674544 24 100.0 36 GATTAAGTAT ........................ GCTGACTGGGGGTGAGCCAGAAATGAAGACTGGAAG 1674604 24 100.0 36 AGACTGGAAG ........................ TAAAATTAGTCTGCTGGCCAATTAAGAACAAACTCT 1674664 24 100.0 35 AACAAACTCT ........................ GTGCAACAGGGTGAAACATAGATGAGCACATTTTT 1674723 24 100.0 35 GCACATTTTT ........................ ATTATGCTCATTATCTCTGATTTCGACCTTAAAGC 1674782 24 100.0 37 ACCTTAAAGC ........................ CTACATTGTCCTGAAGTCCTAACTTCTTTAATTCCTT 1674843 24 100.0 39 TTAATTCCTT ........................ TTTTTATTTTCAGTAGCTATCACCATAGTAGCCCTAAAA 1674906 24 100.0 37 AGCCCTAAAA ........................ TACTCCCCAGGCTTACCCAGCAAGAAGAGGAAGCCTT 1674967 24 100.0 35 AGGAAGCCTT ........................ TAGGAGGAAAATATAGGAATATAAAGATAGTACTA 1675026 24 100.0 35 GATAGTACTA ........................ TAGGAGGAAAATATAGGAATATAAAGATAGTACTA 1675085 24 100.0 35 GATAGTACTA ........................ TAGGAGGAAAATATAGGAATATAAAGATAGTACTA 1675144 24 100.0 35 GATAGTACTA ........................ TAGGAGGAAAATATAGGAATATAAAGATAGTACTA 1675203 24 100.0 35 GATAGTACTA ........................ TAGGAGGAAAATATAGGAATATAAAGATAGTACTA 1675262 24 100.0 36 GATAGTACTA ........................ CATTTTAGCTCAAGCATCACCAGCATCAATTGAAAG 1675322 24 100.0 36 CAATTGAAAG ........................ ACCGTTCCGTAGATATTATTACTGTAACTCCCTCCC 1675382 24 100.0 37 ACTCCCTCCC ........................ ACTGGGCTCCCCGTGATCACTCCAGGTCCTTATGTTG 1675443 24 100.0 36 CCTTATGTTG ........................ GACGCTAAAAAGCAAGAACAACAATCACAACAATCG 1675503 24 100.0 36 ACAACAATCG ........................ TTTCTTAGTGAATCCCATGTACGTATATCTAATTTA 1675563 24 100.0 ATCTAATTTA ........................ ACTGTAACTA ========== ====== ====== ====== ========== ======================== 78 24 35 GTAATAACGACAAGAAACTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.83%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [223,1253] Score: 0.18/0.18 # # Final direction: F [0.68,0.18 Confidence: MEDIUM] >NC_007181 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================== ====== 1786370 26 100.0 40 ATATATACTT .......................... CTACCTTTTGAGATGCTTTCACCGATCTATGTTAAAGCAA 1786436 26 100.0 35 GTTAAAGCAA .......................... CTCGTTTTCAATAAATGTCTATAGGGATGAATGTG 1786497 26 100.0 36 GATGAATGTG .......................... GATACGTTGCAGGCAGATGATGAGAGATGATGATAT 1786559 26 96.2 ATGATGATAT G......................... TGATGTATTT ========== ====== ====== ====== ========== ========================== 4 26 37 ACTTTCAATCCCTTATGGGATTCTTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.54%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [688,1503] Score: 0.18/0.18 # # Final direction: R [0.78,4.68 Confidence: HIGH] >NC_007294 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 690229 36 100.0 30 ATTAAATGCG .................................... AAATGATAAATAACGCTTAACTTGCTTACT 690295 36 100.0 30 CTTGCTTACT .................................... CCTATAAACAAATCAGGATTATATGTACTA 690361 36 100.0 30 ATATGTACTA .................................... TTAAGTCAAGATTTTTAATACCAGGGTGCA 690427 36 100.0 29 CCAGGGTGCA .................................... TCCATATTTTTCCTTACTATTACTATGCT 690492 36 100.0 30 TTACTATGCT .................................... ACGATTTTAAAAATTATGATATAATATAAC 690558 36 100.0 29 ATAATATAAC .................................... TAGAATCTCTTTTAAATTCCCACCAAGCT 690623 36 100.0 30 CCACCAAGCT .................................... CTTTTTTAAATTTTATTATTATAACTTTGT 690689 36 100.0 30 ATAACTTTGT .................................... AATTGCATCATTAACGTTAAAGACGTTACT 690755 36 100.0 30 AGACGTTACT .................................... AATCAAACAACTCGCTTTCTAAATCATCAA 690821 36 100.0 30 AAATCATCAA .................................... TTTGAGCATAATGGCGCTTTGAGTCTTTAG 690887 36 100.0 30 GAGTCTTTAG .................................... AATGCAGATTTAAAAGATTCAGGAACGATT 690953 36 100.0 AGGAACGATT .................................... ATTAGCCCCA ========== ====== ====== ====== ========== ==================================== 12 36 29 GTTTTGGGGTTGTACAATTATTTTGTTAAGTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.22%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.00,-0.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [88.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [11,369] Score: 0.18/0.18 # # Final direction: F [0.64,0.18 Confidence: MEDIUM] >NC_007297 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1239730 32 100.0 33 NNNNNNNNNN C............................... GAGTTTACTCGCTCAAATCAAGGTATGCGGACA 1239795 32 100.0 34 NNNNNNNNNN ................................ GCTGTGACATTGCGGGATGTAATCAAAGTAAAAA 1239861 32 100.0 33 NNNNNNNNNN ................................ TAAAGCAAACCTAGCAGAAGCAGAAAATGACTT 1239926 32 100.0 35 NNNNNNNNNN ................................ CTGATGTAATTGGTGATTTTCGTGATATGCTTTTT 1239993 32 100.0 1 NNNNNNNNNN .....G.......................... NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 5 32 33 ATTTCAATCCACTCACCCATGAAGGGTGAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.12%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [61.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [161,150] Score: 0/0.18 # # Final direction: R [0.27,4.87 Confidence: HIGH] >NC_007333 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 127759 29 93.1 32 CGACAAGTGG .............A..............C GGAACCCCCTGCCAGAGCCGAGCGATGATCTC 127820 29 100.0 32 CGATGATCTC ............................. TGGGTTGGCGACCGCCCCATTGACGGGAGGGA 127881 29 100.0 ACGGGAGGGA ............................. CTAGACGACC ========== ====== ====== ====== ========== ============================= 3 29 32 GGATCATCCCCGCGTGCGCGGGGAGCACA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-14.30,-14.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [30.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [429,546] Score: 0/0.18 # # Final direction: F [0.74,0.68 Confidence: LOW] >NC_007333 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1456445 29 100.0 32 NNNNNNNNNN ............................. CCTCTGCCGTTGGGGCCACCCTGGGGTCTGGG 1456506 29 100.0 32 NNNNNNNNNN ............................. TGGAGGACTCGGGAGCGGGGGAAACGGCGACG 1456567 29 100.0 32 NNNNNNNNNN ............................A CGGCCGGGAGTTGCCGCTCCCGGCCTGACCAG 1456628 29 100.0 32 NNNNNNNNNN ............................. TGGGCGGGCAGCCGCAGATGGCAGGGCGTGCA 1456689 29 100.0 32 NNNNNNNNNN ............................. GCCTGGCTACGGAACTTGGCTGAGCGCGGCTA 1456750 29 100.0 32 NNNNNNNNNN ............................. CAGGTCTACCGCGGCCGTGGGATCTGCCTGGA 1456811 29 100.0 32 NNNNNNNNNN ............................T CCATCGGTTAGGGGGGAACTGGTTCTCCCCAA 1456872 29 100.0 32 NNNNNNNNNN ............................. GCCAGCTAAAAACAGGGCCGCCCAACCGGGCG 1456933 29 100.0 32 NNNNNNNNNN ............................. AGCTCATACAGCGCTGACAACGTTGCGTGCGT 1456994 29 100.0 32 NNNNNNNNNN ............................. GCCAGCTAAAAACAGGGCCGCCCAACCGGGCG 1457055 29 100.0 32 NNNNNNNNNN ............................. AGCTCATACAGCGCTGACAACGTTGCGTGCGT 1457116 29 100.0 32 NNNNNNNNNN ............................. CTAGGTGGGCAGCCCACAGCGGCCGCAACCCC 1457177 29 100.0 32 NNNNNNNNNN ............................. TTTCTCGGTGCCCAGTCTCGGAGGCGGATCAT 1457238 29 100.0 32 NNNNNNNNNN ............................. GAAACGTGGTACTAGGGTTTCTGCGGCACTGG 1457299 29 100.0 32 NNNNNNNNNN ............................. TGTCAGCGACCTGGATGTGTGAACGAGGCCAC 1457360 29 100.0 32 NNNNNNNNNN ............................. GATGTCCGGTGCTTCGTCGAGATAGGCGCGCC 1457421 29 100.0 32 NNNNNNNNNN ............................. CGCGGAGTGGGGATGGCATGCGGGGGAGCACG 1457482 29 100.0 32 NNNNNNNNNN ............................. GTCGAATTCGGCCCTCCATCCTGGTCCGTCGA 1457543 29 100.0 32 NNNNNNNNNN ............................. TCTATTCCGACGACCGGGGTATCCTTCAAATT 1457604 29 100.0 32 NNNNNNNNNN ............................. TCCACCCGCACGACGACAGGGAGGCGTGGCGA 1457665 29 100.0 32 NNNNNNNNNN ............................. GCACGTCTAGAGGCGCTGCGCGCTCTGATGGT 1457726 29 100.0 32 NNNNNNNNNN ............................. TAACAACAAGGGCTGCTCCTATCCCGCATGGG 1457787 29 100.0 32 NNNNNNNNNN ............................. CCGGACGTCCTGCCACTGTTCCGCCCCCGCCC 1457848 29 100.0 32 NNNNNNNNNN ............................. GGTCGCGCCACCGTGACGGCCGTGGTGGCTGT 1457909 29 100.0 32 NNNNNNNNNN ............................C AGGACGACGCCCACGGACGGGGCGCCGTCCTC 1457970 29 100.0 32 NNNNNNNNNN ............................. GCGACACTGTTGTGATCGGCACGGGTCGTGGC 1458031 29 100.0 32 NNNNNNNNNN ............................. AATCGCGGGAGTCAGAACGGAAAGTAGACGCC 1458092 29 100.0 32 NNNNNNNNNN ............................. TTGTGACACCGATACCCGCGCTGGCCGGCCGT 1458153 29 100.0 32 NNNNNNNNNN ............................. AGCCCACTGTCCCACTTGAGCTGATCCAGCAG 1458214 29 100.0 32 NNNNNNNNNN ............................. GGGGAGTGGAAACGCCAGCCGCAATCCATGTT 1458275 29 100.0 32 NNNNNNNNNN ............................. TAGACTTTGGTGACTGCCTGGTTGAAGTAGCG 1458336 29 100.0 32 NNNNNNNNNN ............................T GGAGGCGGATCAGGCAGCGGCCGAGGTGGCTC 1458397 29 100.0 32 NNNNNNNNNN ............................A CCGCAACCCCTAGGACACAACGAGACACCCGA 1458458 29 100.0 32 NNNNNNNNNN ............................T GAGTTCATCGGCCCATTCGAGTACGACCCGGC 1458519 29 100.0 32 NNNNNNNNNN ............................. CCCGGAGACGTTTTCCAGTCCGGGGACACTCG 1458580 29 100.0 32 NNNNNNNNNN ............................. GCGGAGAAGTGGGCCGCGGCCGCAGTGGGTCT 1458641 29 100.0 32 NNNNNNNNNN ............................. CCTGTCCCCGCGTAGCCGCGCCCCGCGCTCCC 1458702 29 100.0 32 NNNNNNNNNN ............................. ATCTCTTCGCCCTCCCAGGCGGCCCAGGAGAT 1458763 29 100.0 32 NNNNNNNNNN ............................. GTTTCCGAGTGAGGGAGAACCCGCATGACCCG 1458824 29 100.0 33 NNNNNNNNNN ............................. TTCACCGGCCCCGAAACCGGTTTCGGCCCCGGT 1458886 29 100.0 32 NNNNNNNNNN ............................. CCGAGCGCCGCCTCGGCGAACTCCAGATCAAC 1458947 29 100.0 32 NNNNNNNNNN ............................. AGCCCGGGCCCGCACGGGCCGGCCGTCGACGC 1459008 29 100.0 32 NNNNNNNNNN ............................. ACTACGTCTTCGGGCGCAGCAGCGCCGCACAC 1459069 29 100.0 32 NNNNNNNNNN ............................. TTTTCACACCCTAGGCTTTCCCCTTGCCTCCC 1459130 29 100.0 32 NNNNNNNNNN ............................. ACCTCCACGCCGATGCCCTCACGGCGGAGCTC 1459191 29 100.0 32 NNNNNNNNNN ............................. GTTTCCGAGTGAGGGAGAACCCGCATGACCCG 1459252 29 100.0 33 NNNNNNNNNN ............................. TTCACCGGCCCCGAAACCGGTTTCGGCCCCGGT 1459314 29 100.0 32 NNNNNNNNNN ............................. CCGAGCGCCGCCTCGGCGAACTCCAGATCAAC 1459375 29 100.0 32 NNNNNNNNNN ............................. AGCCCGGGCCCGCACGGGCCGGCCGTCGACGC 1459436 29 100.0 32 NNNNNNNNNN ............................. ACTACGTCTTCGGGCGCAGCAGCGCCGCACAC 1459497 29 100.0 32 NNNNNNNNNN ............................. TTTTCACACCCTAGGCTTTCCCCTTGCCTCCC 1459558 29 100.0 32 NNNNNNNNNN ............................. ACCTCCACGCCGATGCCCTCACGGCGGAGCTC 1459619 29 100.0 32 NNNNNNNNNN ............................. TCGCTTCCCCGGGGGCGCGACGGCCGCGCCCC 1459680 29 100.0 32 NNNNNNNNNN ............................T GGGCTAGTCGACCCCGGTGGCTGAGACGACGA 1459741 29 100.0 32 NNNNNNNNNN ............................T CCGTCAGTTAGGGGGGAACTGGTTCCCCCCAT 1459802 29 100.0 32 NNNNNNNNNN ............................. ACCGCGCGGAGAAGGTCGTCCAAACGCACTCC 1459863 29 100.0 32 NNNNNNNNNN ............................T GGTGGTGTTCCTTTCTGTGGAATGGGGCGGCA 1459924 29 100.0 32 NNNNNNNNNN ............................. AGCTCGACGATTCGGGGAGCCAACCTCATCTT 1459985 29 100.0 32 NNNNNNNNNN ............................. TTTTACGGACCCCCCAGTGCGGCGAAGGAGGA 1460046 29 100.0 33 NNNNNNNNNN ............................. GGCAGGCAAATCAACCTGCAGTCCTAGGCCGCA 1460108 29 100.0 32 NNNNNNNNNN ............................T CGCCACCCCCATGCGAACGTTCCGCCGCTGGG 1460169 29 100.0 32 NNNNNNNNNN ............................T GTGGAGGGTAGACACCTCGAGTGTCCCCGGAC 1460230 29 100.0 32 NNNNNNNNNN ............................. AACAGATCCACAGCATGGTCAGCAGACACCTG 1460291 29 100.0 32 NNNNNNNNNN ............................T GCGCGGGACGTGATGATCATGGCGACCGTGTG 1460352 29 100.0 32 NNNNNNNNNN ............................C GTCTAGAGAGGGCCGCGCAGTATCTACGTGAA 1460413 29 100.0 32 NNNNNNNNNN ............................. CATCTCGCCGGGCTTGTACTTGCCTCGCTTGA 1460474 29 100.0 1 NNNNNNNNNN ..............G........A..... NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 67 29 32 GTGCTCCCCACGCACGTGGGGATGGTCCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [56.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [439,2275] Score: 0.18/0.18 # # Final direction: F [0.68,0.55 Confidence: LOW] >NC_007333 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1529653 28 100.0 33 AACGCCCCGC ............................ TCTTTGGCAGCCATGCTCGGCCGCCACCGAAAC 1529714 28 100.0 33 CCACCGAAAC ............................ CCAATTGAGCTGCCGGTCGGTGGGGATTTCTCC 1529775 28 100.0 34 GGATTTCTCC ............................ GGTGGGGGTCCAGGACCTCCAGATCACGCCGTAC 1529837 28 100.0 33 CACGCCGTAC ............................ TCCCTAGCCCTGGAACTAGGGAGAACTACCCAA 1529898 28 100.0 33 AACTACCCAA ............................ TAGGTGTAGAGGGCTGCAGGGACCTGCAGGGAC 1529959 28 100.0 34 CTGCAGGGAC ............................ GCCAACCACGGCGAGACAGAACCTCGTGGAAACA 1530021 28 100.0 33 CGTGGAAACA ............................ CCCGTGCTCTCATCGAAAGGGTTGCCGGAACCC 1530082 28 100.0 33 GCCGGAACCC ............................ GCGGATGCTGAGCAGCTGCCCGGGGTGATCGAC 1530143 28 100.0 33 GGTGATCGAC ............................ GTGGCCGGCGCAGAGGTCAGCGAGGTCGGGCCG 1530204 28 100.0 33 GGTCGGGCCG ............................ AGGGTCGTGGGACGAACGGGACCGCACAGCGCC 1530265 28 100.0 33 GCACAGCGCC ............................ GACTTGGATAGGGGCGACAAACTCGACCTCGCC 1530326 28 100.0 34 CGACCTCGCC ............................ GACGACCAGAAGGCCTACCCTCCACGGCAGCCAC 1530388 28 100.0 33 CGGCAGCCAC ............................ CCGGCGCGGGGCTGGGCGGACATCGGCTACAGC 1530449 28 100.0 33 CGGCTACAGC ............................ TCGACGTCAATAAGACCAGCCCGCGACAGTTCC 1530510 28 100.0 33 CGACAGTTCC ............................ ACAGCGGCCAGCAGGCCTGCCCAGTAGAGAGCC 1530571 28 100.0 33 GTAGAGAGCC ............................ GCCTTCCCAGGCGGCCCAGGAGATGCGGCCGGA 1530632 28 100.0 33 TGCGGCCGGA ............................ CTCACCGAGAACGCTTCGGTGAACCGCGTACGG 1530693 28 100.0 CCGCGTACGG ............................ TTGCTGCGAG ========== ====== ====== ====== ========== ============================ 18 28 33 GGTCCATCCCCACGTGCGTGGGGAGCAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [193,35] Score: 0.18/0.18 # # Final direction: R [0.18,0.64 Confidence: MEDIUM] >NC_007333 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1536218 28 100.0 33 CCCCCTCAGC ............................ TCCACCGGCACGACGAGGTCTGCCAAATCGCCC 1536279 28 100.0 33 CAAATCGCCC ............................ GACTCGCTGTCCGAGACCGCCGTACTCGACGTC 1536340 28 100.0 33 ACTCGACGTC ............................ ACCTGATCCAACAGGCCGGTTTCTGGCCTGTTC 1536401 28 100.0 33 TGGCCTGTTC ............................ GCTCGAGGAGGCGACACATGAGCGCTGACCTGC 1536462 28 100.0 33 GCTGACCTGC ............................ GTGCGGTGCCGTGCGCGGTTCTCTCGGTAATGC 1536523 28 100.0 33 TCGGTAATGC ............................ AAACACCCCTAGAGCGCCCTGAGGGGCGCGCTG 1536584 28 100.0 33 GGGCGCGCTG ............................ GACGACGAGGACGGGCAGGTCGGAGAACTCGGC 1536645 28 100.0 33 AGAACTCGGC ............................ GCCGCAGCAGATAGGACCTCGTTCTCGTCCTCC 1536706 28 100.0 33 CTCGTCCTCC ............................ GATAGACCACGGTTCAGCGTCCCCGGCAACAAA 1536767 28 100.0 33 CGGCAACAAA ............................ CGCGTCGAAAACCTGGTCGTCGCTCCGGACCCA 1536828 28 100.0 33 TCCGGACCCA ............................ CAGGCGCGGCCGGTGGTCGTCCCGGCGCTCGGC 1536889 28 100.0 33 GGCGCTCGGC ............................ GTAGGTAGTGATAACAACCCGGATCATCGGCGC 1536950 28 100.0 34 TCATCGGCGC ............................ TCGGGACGGGACTCAGTCATTGGTGTCGGTGTCC 1537012 28 100.0 33 GTCGGTGTCC ............................ CGCCGACGAGGAAGCCGACGAGACAGAGGCAGC 1537073 28 100.0 33 CAGAGGCAGC ............................ ATGTAACGATCACCGGCGCGACGAACCGAGCGC 1537134 28 100.0 33 AACCGAGCGC ............................ GATGATCAGGATGGGGAGGCCCTGCTCATCTCC 1537195 28 100.0 33 GCTCATCTCC ............................ AATTCCGACGTCTATTCGTGATGTATGTGCCGT 1537256 28 100.0 33 TATGTGCCGT ............................ GTCCGGCAGCGCGAATCGCGCGTCCGCCTCGTC 1537317 28 100.0 33 CCGCCTCGTC ............................ GCCACCGGGTTGGGGTTACGCGGCGTGGTGTTC 1537378 28 100.0 33 CGTGGTGTTC ............................ ACATGTGGCGCGTCGACGACGACGACGAATGGT 1537439 28 100.0 GACGAATGGT ............................ AGAAGCTGAC ========== ====== ====== ====== ========== ============================ 21 28 33 GGTCCATCCCCACGTGCGTGGGGAGCAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [675,838] Score: 0/0.18 # # Final direction: R [0,0.64 Confidence: HIGH] >NC_007333 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1827206 29 100.0 32 TGGTCACCCA ............................. CGCTGATCCAGGCCCCCCACATTTTCCGTGGA 1827267 29 100.0 32 TTTCCGTGGA ............................. ATGTGTTGTGCCGGTCTGGGTTCCGGTTTGGG 1827328 29 100.0 32 CCGGTTTGGG ............................. ATTTTGCGCAGCTCTGTGATAGCACGGCGGAC 1827389 29 100.0 32 CACGGCGGAC ............................. AAAGGGGGAGTGCGGCCGATACCGCGCTCCCC 1827450 29 100.0 32 CGCGCTCCCC ............................. CAGCAGTTCCAGGGCAGTCTGGTGGTCCCGGT 1827511 29 100.0 32 TGGTCCCGGT ............................. CCAGTCGTCGGGGTCGGTGTCGAAGTAGGGGT 1827572 29 100.0 32 AAGTAGGGGT ............................. CCCGTAGGTCACGGTGCGCAGTTCTCCACTGT 1827633 29 100.0 33 TCTCCACTGT ............................. AGCGACCACCAGCGGCGACCACACACCAGCTGC 1827695 29 100.0 32 CACCAGCTGC ............................. TCGGTCACCAGGGCCTGCGCCTCGGCGTGCGC 1827756 29 100.0 32 CGGCGTGCGC ............................. CGGCGACCCACCATCTTTTAAACGTTCTACTA 1827817 29 100.0 32 CGTTCTACTA ............................. CAGAGAAAGCCCCCCAGAATGTCTCTGGAGGG 1827878 29 100.0 33 CTCTGGAGGG ............................. CAAAGTCCCCCCCTGGTGGGGCAGACGACCCCG 1827940 29 100.0 33 GACGACCCCG ............................. GTCCGGGTGAAAGACGCCACCAAGGACATCACT 1828002 29 100.0 GGACATCACT ............................. TCGGTCGGAA ========== ====== ====== ====== ========== ============================= 14 29 32 CGGTCCATCCCCACGTGCGTGGGGCTCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [747,1347] Score: 0/0.18 # # Final direction: R [0.27,0.37 Confidence: LOW] >NC_007333 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1692306 28 100.0 33 GTTCACCGCC ............................ ATGCCGCCCGGTATACCACTACGGCCACGTGGA 1692367 28 100.0 33 GCCACGTGGA ............................ ACGGTGCACACGGTGCGGGACTACTGGCGGCGC 1692428 28 100.0 33 CTGGCGGCGC ............................ ACGCGGTGGAGCCTCCTGGTTCTCGCTGAACGC 1692489 28 100.0 33 CGCTGAACGC ............................ CGTGAAGAACGCGGCCACGGCATTCCACACGGA 1692550 28 100.0 33 TCCACACGGA ............................ AAACTTACCTCACCCAACGGCCCACCACGATTC 1692611 28 100.0 34 ACCACGATTC ............................ GGTGTGCGGCGTGAGGTTGACGATGCGCATGGGC 1692673 28 100.0 33 GCGCATGGGC ............................ GAGACCGCCTTCTTTCTCCGTCGATTTCAGAGC 1692734 28 100.0 33 ATTTCAGAGC ............................ ATCAGCCGGGTCAGCCCCTTATCACAGCGCTGC 1692795 28 100.0 34 ACAGCGCTGC ............................ GATCCCCCGGTCGGTGCCGACGAACCCACTGCCC 1692857 28 100.0 33 CCCACTGCCC ............................ ATCGCATCCGGCATGCCCAGTAGGCGGGCCTCC 1692918 28 100.0 33 GCGGGCCTCC ............................ ACTGTCACCCTGGGAGGCGCTTCCTCGACTGGC 1692979 28 100.0 33 CTCGACTGGC ............................ CGGAGTGGCCACCGTCAGCACAATGTTCGGGTC 1693040 28 100.0 33 TGTTCGGGTC ............................ CCTGCCCCGCAAACCATTGCGGAAAAGGCACTC 1693101 28 100.0 33 AAAGGCACTC ............................ GGCGGTTACACTCTCCAGTCGGAGAGCGACGGC 1693162 28 100.0 33 GAGCGACGGC ............................ CACGGCTGGAAGACCGCCGGTCCCTGGGAGATC 1693223 28 100.0 33 CTGGGAGATC ............................ ACACCGGTGGCGGCAGGCCGATGTGGATGCCGA 1693284 28 100.0 34 TGGATGCCGA ............................ GGTGCTGCGGCTGTGGGAGCAGGCTGCCGGCAGA 1693346 28 100.0 33 TGCCGGCAGA ............................ ACCTGATCCAACAGGCCGGGTTCTGGCCGGTTC 1693407 28 100.0 33 TGGCCGGTTC ............................ ACGCCTTCGGGGCGTATCGTCGGACCTCGTAGA 1693468 28 100.0 33 ACCTCGTAGA ............................ CGGTTTGGGCCGGCTACGTGCGCCGGTTCCGGA 1693529 28 100.0 33 CGGTTCCGGA ............................ TCGTCTCAGTCGTCTCAAACTATTTACTAGGAC 1693590 28 100.0 33 TTACTAGGAC ............................ GTGCGCACCGCATGTCGCGACGCGCCGTAGCGC 1693651 28 100.0 33 GCCGTAGCGC ............................ CCGGTTTGTCTCCGCTCAGCTCCACCGGGAAGC 1693712 28 100.0 33 ACCGGGAAGC ............................ CTTTCCAAGGAAAGCGCCGAAGTGATCCGGGAA 1693773 28 100.0 34 GATCCGGGAA ............................ ACGAGAACGAGGTCCTGGCGACCGCGGCTGAGTC 1693835 28 100.0 CGGCTGAGTC ............................ AGAAGCTG ========== ====== ====== ====== ========== ============================ 26 28 33 GGTCCATCCCCACGTGCGTGGGGCTCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [35.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [512,388] Score: 0/0.18 # # Final direction: R [0,0.64 Confidence: HIGH] >NC_007333 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1838904 29 100.0 32 GTCAACAACT ............................. AACTCGCCAGTTACGGGCCGCACACTGACGAT 1838965 29 96.6 32 CACTGACGAT ............................C GCGTAGGTGATGGTGTAGGCGGTGCCGTAGTC 1839026 29 100.0 32 TGCCGTAGTC ............................. ATCAAAATGCTCTCGATCGCGGCCCGATCCGA 1839087 29 100.0 32 CCCGATCCGA ............................. ACCGCCGTCTCGGCGACCCGGATGATCGCGTC 1839148 29 100.0 32 TGATCGCGTC ............................. CGGAGTGAAACCAGCCTCTACCTGAAACGGCA 1839209 29 100.0 32 TGAAACGGCA ............................. GCTTCAGTCGCACGCTAGACCAGCATCACCGC 1839270 29 100.0 32 GCATCACCGC ............................. ACACGCTTAGACGCGCTCAGACGCGCTCAGGC 1839331 29 100.0 32 GCGCTCAGGC ............................. CGTTGGGGGACGCGGACAGCGTCCTCCCCGCA 1839392 29 100.0 32 CCTCCCCGCA ............................. TGCGTCTTTAGGGATGACCAGGTTTTCGACGC 1839453 29 100.0 32 TTTTCGACGC ............................. CAGACCATTACCCCGCATGAGCGGCGGACACA 1839514 29 100.0 GGCGGACACA ............................. GTGGGGTCGACGAGGTTCGTCCAGTGGCCGTA ========== ====== ====== ====== ========== ============================= 11 29 32 GAGAGCCCCACGCACGTGGGGATGGACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [48.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [165,289] Score: 0/0.18 # # Final direction: F [0.64,0.41 Confidence: LOW] >NC_007333 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1828124 29 100.0 32 ATGCCAGGGC ............................. ATCGAAACGCTGACCGCCGCGCTGAACGATTT 1828185 29 100.0 32 TGAACGATTT ............................. CGTCGACGAGGGGCGCTGAAGTCCGCCGGTGG 1828246 29 96.6 32 CCGCCGGTGG .........................G... AGTGCGGCGCCACTCCCGAAGAAGCGGCAGCC 1828307 29 100.0 32 AGCGGCAGCC ............................. TCCCGCTAGCATGGCGATGCCGCTGAAAAACC 1828368 29 100.0 32 CTGAAAAACC ............................. GTGGCTGCACGGCAAACCTGGTCACGGCAAAT 1828429 29 100.0 33 CACGGCAAAT ............................. GGTGAAACGCCGTAGCGGCCCTGGGATTGGCGC 1828491 29 100.0 32 GGATTGGCGC ............................. CGCGGAACGCGGGACGAGCGGAACGCGGAACG 1828552 29 96.6 32 ACGCGGAACG ............................T GCCGGGCACCAAGCGGCCCCGTGCGAGCCGCC 1828613 29 100.0 32 GCGAGCCGCC ............................. TACGACATGCCCAACCCACCGCTCGATGACGT 1828674 29 96.6 32 TCGATGACGT T............................ TAGTAGGCGACGACGTCTTCAGCGTCGCCTGC 1828735 29 100.0 32 CGTCGCCTGC ............................. GTTCAGGGGTTATGTTGACGCGTTCAAGGCGG 1828796 29 100.0 32 TTCAAGGCGG ............................. CGACTCGACGTCATCGGTGAGGTTCACCGGGG 1828857 29 100.0 32 TTCACCGGGG ............................. GCCCTCGTCGGGAGTCCAGCCCGGCGAGGGTA 1828918 29 100.0 32 GGCGAGGGTA ............................. TAGGTCATCCCCCCGATCTACTGCCACTGGCT 1828979 29 100.0 GCCACTGGCT ............................. AGTTACTTAC ========== ====== ====== ====== ========== ============================= 15 29 32 CGGTCCATCCCCACGTGCGTGGGGCTCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [30.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1665,370] Score: 0.18/0.18 # # Final direction: R [0.18,0.64 Confidence: MEDIUM] >NC_007333 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2108024 28 100.0 32 GGGCAGGACG ............................ TGCCACGGGTCGGGGTTGGATCCGTAGTCGGG 2108084 28 100.0 33 CGTAGTCGGG ............................ CAGGTTTTCACCCGCCACCGGTAGGAGGCCCCG 2108145 28 100.0 33 GGAGGCCCCG ............................ TCCGGCATAGCGTGTGGCAGTGGCCCCCGGGAA 2108206 28 96.4 33 CCCCCGGGAA ......................A..... TCCCCCCGTTCAGGGGACCGGATGGGGCGCGGC 2108267 28 100.0 GGGGCGCGGC ............................ CCTAAACGAC ========== ====== ====== ====== ========== ============================ 5 28 32 GGACCATCCCCGCATGCGCGGGGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [31.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [176,385] Score: 0.18/0.18 # # Final direction: F [0.78,0.45 Confidence: LOW] >NC_007333 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2295711 28 100.0 33 GCCACAGGAC ............................ CAGCCATCGTCGGCACCGCCGCCCACGCGTGGC 2295772 28 100.0 33 CACGCGTGGC ............................ TGAGCGCTAGATATCGAGACATCGCCAACGAAC 2295833 28 100.0 33 GCCAACGAAC ............................ TGGGTCTGCTGGAGAGGAAGCGGCTCGAAGTGC 2295894 28 100.0 34 CTCGAAGTGC ............................ GGGACTGGGAGGACATCACCACCAGAAGCGCTGA 2295956 28 100.0 33 GAAGCGCTGA ............................ GCCCTGCCCCCTCTGTTGGGGGCAGCTCCCGCT 2296017 28 100.0 AGCTCCCGCT ............................ GACCCGATC ========== ====== ====== ====== ========== ============================ 6 28 33 GGTCCATCCCCACGTGCGTGGGGCTCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [28.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [538,1060] Score: 0/0.18 # # Final direction: R [0.27,0.37 Confidence: LOW] >NC_007333 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2296197 29 96.6 32 TCAAGGCCAT ............................T CGGGTACCTCGTCGATCTCGGTGTAGTCAAGG 2296258 29 100.0 32 GTAGTCAAGG ............................. CGCCGGGGGGAGCTCCCCCACCTCGGTGACGG 2296319 29 100.0 32 TCGGTGACGG ............................. CACGCAGCGCAGGTGCGACCGGAACCAGAGGC 2296380 29 96.6 32 AACCAGAGGC G............................ ACAACCTGCGCCAGCGGCAGCAGGTTCGTCGA 2296441 29 100.0 GGTTCGTCGA ............................. AGAAGCTGACC ========== ====== ====== ====== ========== ============================= 5 29 32 CGGTCCATCCCCACGTGCGTGGGGCTCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [1024,635] Score: 0/0.18 # # Final direction: R [0,0.78 Confidence: HIGH] >NC_007333 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3447568 28 92.9 33 GTCCCAGCTC ..C.T....................... CGCGCCCTGCTGGACTACACCGATGGCGAGCCC 3447629 28 100.0 33 TGGCGAGCCC ............................ TGGGCGCTCCGGTGGCGGCGGGCCAATGTCGTA 3447690 28 100.0 34 CAATGTCGTA ............................ AGAAATCGCCGATGAACTGCGGAAACGCATCACG 3447752 28 100.0 33 ACGCATCACG ............................ CCCCGTCTGCGTGGACTCAGGTGTCTAGCACTC 3447813 28 100.0 33 TCTAGCACTC ............................ TGAGGGTTCTCCGCGCTGCTACTGCGAGAACGC 3447874 28 100.0 33 GCGAGAACGC ............................ TTGGGCCGCGAAGCGAGTTGGATGTTATCCAGC 3447935 28 100.0 33 GTTATCCAGC ............................ CCCCTCGCTTCTCCGGGATCCCCACGACGGGAC 3447996 28 100.0 33 ACGACGGGAC ............................ AGAGGGGGTGTCAGACATCCCCTGACCTGTAAC 3448057 28 100.0 33 GACCTGTAAC ............................ GTACAGGCTGACTCGCCTGCTATCCGCACGCGC 3448118 28 100.0 33 CCGCACGCGC ............................ CGGTCGCGGTTGGCGCGCTGGTTTTCCATAAGC 3448179 28 100.0 33 TTCCATAAGC ............................ TCCTCGCGGAACCGTGCGAGGTCGCGGTAGAGC 3448240 28 100.0 34 GCGGTAGAGC ............................ CCGTGTACACGTTCCGCCTACGGCTGCGGTTGGC 3448302 28 100.0 33 TGCGGTTGGC ............................ GGACGAGGGGGACACCGTTCTCGGCAGCGACGC 3448363 28 100.0 GCAGCGACGC ............................ GCTTATGTCA ========== ====== ====== ====== ========== ============================ 14 28 33 GGTCCATCCCCACGTGCGTGGGGCTCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [33.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [390,94] Score: 0.18/0.18 # # Final direction: R [0.18,1.05 Confidence: HIGH] >NC_007333 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3449780 29 100.0 32 NNNNNNNNNN ............................. GCCGGCCGAGTGCGGCGTTTCCGCAGATAGCG 3449841 29 100.0 32 NNNNNNNNNN ............................. CGGCCTCCGTGACCGAGACGGTGACCGCACGA 3449902 29 100.0 32 NNNNNNNNNN ............................. TCCTCGACGGACACACGAGGCCGCCCGTGGGT 3449963 29 100.0 32 NNNNNNNNNN ............................. GGTCATGGCCATGGAATGGGGGGAAGCTGGTG 3450024 29 100.0 32 NNNNNNNNNN ............................. AACTGGCGAGTTCTCCGTCCGCCACCCCGAAT 3450085 29 100.0 32 NNNNNNNNNN ............................. GAGATGCCCGAATGCGAGGCCGTGCGCGACGC 3450146 29 100.0 32 NNNNNNNNNN ............................. AGCGTGTTGTGCAGCGCAGCGTGGAACGGCCG 3450207 29 100.0 32 NNNNNNNNNN ............................. GGAGCCGCAGCAGTCGCCAGCGCCCTGGTCGC 3450268 29 100.0 32 NNNNNNNNNN ............................. ACCACCATCCGTCGTCGTCGTCCGCGCGTTGA 3450329 29 100.0 32 NNNNNNNNNN A............................ ATGACTAAGCGACCCATCCCCAGTGAAGAAAT 3450390 29 100.0 32 NNNNNNNNNN ............................. CAGGTGGCGTACGGTATGCAACACTGGTTGTG 3450451 29 100.0 32 NNNNNNNNNN ............................. GCGATCCCCACCGTCGCCCAGCGCGCCGCCCC 3450512 29 100.0 32 NNNNNNNNNN ............................. AGCCGCTGCACCTCGGTACGGGTCGCAGACTC 3450573 29 100.0 32 NNNNNNNNNN ............................. TTGGCGCGCTGTTCGTTTTTGCGCATCTGCGC 3450634 29 100.0 32 NNNNNNNNNN ............................. GAGTTCGGTTGGGGCGGGTCTCGGGCGTCTCG 3450695 29 100.0 32 NNNNNNNNNN T............................ AGGGGCAACCCCAGTGTTGCATACCGCATGTA 3450756 29 100.0 33 NNNNNNNNNN ............................. GACGCCCCCTGTAGTACGCCAGCTCGCCGGGGA 3450818 29 100.0 32 NNNNNNNNNN ............................. TCTCGAGGCCGGGGCGCTCAGGGTGCTGCCTG 3450879 29 100.0 32 NNNNNNNNNN ............................. CCGCTCCCTGCATCCTCTGCGGCGACCCTTCG 3450940 29 100.0 32 NNNNNNNNNN ............................. TTTGCGGATGAGCCTGCCTGCAATCTCGGCCG 3451001 29 100.0 32 NNNNNNNNNN ............................. ACCAGATTCGCAGACCCCGGGTAGAGGCGGAT 3451062 29 100.0 32 NNNNNNNNNN ............................. CACGCAATCGCCGAGTCACTGGCCCGCACGAG 3451123 29 100.0 32 NNNNNNNNNN ............................. GCGCCGAACGCCGCGCGGGTGACCTCGTCCAG 3451184 29 100.0 32 NNNNNNNNNN ............................. GTGCCCGCTGTCTGGTGCGGCGGGCGCTGTGC 3451245 29 100.0 30 NNNNNNNNNN ............................. CTGTCGCCTGTGGCCAGCGTGGGGGGGAAA 3451304 29 100.0 32 NNNNNNNNNN ............................. CCGCGTATCCGCATCCAGCACGACCGTGAGCT 3451365 29 100.0 32 NNNNNNNNNN ............................. GTCACGGTCGGCGATGATGCGAACATCCCGGG 3451426 29 100.0 32 NNNNNNNNNN ............................. GTCCTCGGCGGGCATGATCACCGCACCGGCTG 3451487 29 100.0 32 NNNNNNNNNN G............................ GGGGCGTAGAGCGAACAGGACCAAACAGTGCC 3451548 29 100.0 32 NNNNNNNNNN ............................. CCCACCTGAGAGGACATCCGATGCAGCAGACC 3451609 29 100.0 32 NNNNNNNNNN A............................ GTGCTCGTCGAGGTGGCTCGACGTCGACGCGG 3451670 29 100.0 32 NNNNNNNNNN ............................. CGGGCCACTGCCTTGGCGCGCCGCTTCGACCC 3451731 29 100.0 32 NNNNNNNNNN ............................. GGGAGCACCCACTTTGTGTGTCTCGGGTAACT 3451792 29 100.0 32 NNNNNNNNNN ............................. GCGACCCCACCGTCTGGCGGTTCCGCGGATGG 3451853 29 100.0 32 NNNNNNNNNN ............................. CCTGGCCAGAGCGTCGCCATACGCGCGGGCCG 3451914 29 100.0 32 NNNNNNNNNN ............................. TGCGGGGGGACCGGGGAGCTCCCGGTCGATGA 3451975 29 100.0 33 NNNNNNNNNN ............................. TCAGGCCACCTCGGCCGAAGTCGAGCGCGCCGC 3452037 29 100.0 32 NNNNNNNNNN ............................. AACTCTCGGCGTTGAGCCAAGTGCGGGTAGAC 3452098 29 100.0 33 NNNNNNNNNN ............................. CGGTCCGCTGGTGTGCCGCGCTCAGCGCCCCGC 3452160 29 100.0 32 NNNNNNNNNN T............................ TTGTGCTCGTGACCCGTTTGCTGCCTCACCTG 3452221 29 100.0 32 NNNNNNNNNN ............................. GGACAAGGAGCTGGCCGCGGTGTTCGGCTGGC 3452282 29 100.0 32 NNNNNNNNNN A............................ CGGGGGAGGTGCTGCTCGCAGCCCGGGCACCA 3452343 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 43 29 32 CGGTCCATCCCCACGTGCGTGGGGCTCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [23.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [222,974] Score: 0.18/0.18 # # Final direction: R [0.41,0.82 Confidence: MEDIUM] >NC_007355 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1660381 37 100.0 46 CTTTTTTAAG ..................................... CAGTCATCTTTTACACATCCTATTTTCATCAATTGTTTGCTTTGGC 1660464 37 100.0 34 TTGCTTTGGC ..................................... GATATTACGAGTAAAAGGAGAAAACAAAGATCAA 1660535 37 100.0 35 CAAAGATCAA ..................................... AACTATACGCGAGGGAGAGGTACATAGAGTATATT 1660607 37 100.0 36 AGAGTATATT ..................................... GACAACGCAGATGAAGCAAAAGCTTACGTAATCCCA 1660680 37 100.0 37 CGTAATCCCA ..................................... CGAGAACATAAATTCCGGTAGCATCCTTTTTTGTAAT 1660754 37 100.0 TTTTTGTAAT ..................................... CTTTTTCAGC ========== ====== ====== ====== ========== ===================================== 6 37 37 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.16%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.90,-2.90] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [757,1277] Score: 0/0.18 # # Final direction: F [4.5,0 Confidence: HIGH] >NC_007355 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 356467 30 100.0 35 AATTTCCTTG .............................. TGAACTTGAAATTCAGGACTGGCTAGCAAAAGAAA 356532 30 100.0 36 GCAAAAGAAA .............................. GTTGAATCAAAAATATATCCAGCAAGTATTGTCCTT 356598 30 100.0 37 TATTGTCCTT .............................. GTAATAGTAAAATATAATCTATCATTTGATCTCGAAC 356665 30 100.0 38 GATCTCGAAC .............................. AATGCAAGATATGATCATACAGGCGGACCTGATTTAGT 356733 30 100.0 36 CTGATTTAGT .............................. CCGCATGGAGAGAAACAGACGGAATCCACGCAAAAG 356799 30 100.0 35 CACGCAAAAG .............................. TGTGTCTATAACTGATATTCTTAATGCAAACGATA 356864 30 100.0 37 GCAAACGATA .............................. TATTCTGAGTCTGGATATCCCGAACTCCCAAAATACT 356931 30 100.0 37 CCAAAATACT .............................. AATCTAGGAGTCTTAATCTTTCATCAAGAAGCCCCTT 356998 30 100.0 36 GAAGCCCCTT .............................. ATTGGAAGCAGCTAGTCGGGGTTGCCTGCGGGTCTG 357064 30 100.0 36 TGCGGGTCTG .............................. CTGTCAAAACTCGATGCACAGACACCTGTTAGTATC 357130 30 100.0 36 TGTTAGTATC .............................. CTTTTTTGGAGCAACACATATGAACCTTAAAAATAT 357196 30 100.0 37 TTAAAAATAT .............................. TATCCTGGACATAGACACGAAGCAGTATGGATAAGAG 357263 30 100.0 38 TGGATAAGAG .............................. ATCAATATATAATAATTCCTAGAATTATAAGTATAAAT 357331 30 100.0 35 AAGTATAAAT .............................. GAATGTGACGGATGTGAAACAATACGGGTGGGAAA 357396 30 100.0 38 GGGTGGGAAA .............................. TTTAGGAATAATCTTCTTAGTTCCCGAGTACAACACGT 357464 30 100.0 36 TACAACACGT .............................. GAGTTCAACCGGTGACCGGCGGAGCAATTGAAAAAT 357530 30 100.0 35 ATTGAAAAAT .............................. TATAATTCTAACAATTGTACGGATTTAAAAAATTG 357595 30 100.0 35 TAAAAAATTG .............................. TCAGCTACCGAAGGATTTCAAGGGGTTTTTACTCT 357660 30 100.0 35 TTTTTACTCT .............................. ATCAAATCCACTTTTTATATAAGCATCTTTTACGA 357725 30 100.0 37 TCTTTTACGA .............................. CTAACTAAGTATTCAAGGAATGCTGGAGGATTAGGAT 357792 30 100.0 36 GGATTAGGAT .............................. GTTTAATTGGCTCCCAGCAGTCACACCCATAGCAGT 357858 30 100.0 35 CCATAGCAGT .............................. GAGGATTAGGATGATTGGCAATAAAACTAAACTTT 357923 30 100.0 36 ACTAAACTTT .............................. AATGATGATTTTAGTGGAGTGTTTGGTCTTAAGTCG 357989 30 100.0 36 TCTTAAGTCG .............................. TTGATTCATGGGATATCGGAGGGACGAGCAATGCAG 358055 30 100.0 38 AGCAATGCAG .............................. CATATAAAGAAAGTAAATAAGAAACTCATGAATTATAA 358123 30 100.0 35 TGAATTATAA .............................. AATTTAGGTGATCCTGTTCTACTGGTTCCTGTGTT 358188 30 100.0 36 TTCCTGTGTT .............................. GAATCTGTGAATTTAATATCTAAAATGTCAAATATG 358254 30 100.0 36 GTCAAATATG .............................. GTGCTCTTCTTTAACCCCAACTTGAAATTTTATATA 358320 30 100.0 35 ATTTTATATA .............................. ATAAAAACAAAAACGATTGTCTGTCTAAGCTATAC 358385 30 100.0 35 TAAGCTATAC .............................. GTGTATGTTTCTGACAGCTCAATAATAGTTAGATA 358450 30 100.0 37 TAGTTAGATA .............................. AGATATTCTTTTTGAAGCCCTTTAAAATCTATAAGTT 358517 30 100.0 37 TCTATAAGTT .............................. TTAGTTATAAACCATTTATAGACACAGTAGCAGCACT 358584 30 100.0 36 TAGCAGCACT .............................. ATTGCAATATCGAGAATATCTTTTACGGAAATTGCA 358650 30 100.0 36 GGAAATTGCA .............................. ATATTCGGATGGAAAACACTCCCTTGGTGTGAAACA 358716 30 100.0 37 GTGTGAAACA .............................. CCTCAAGTTCTCCATCGCTTCAACGAATAGATATCAA 358783 30 100.0 35 TAGATATCAA .............................. GCATAATACAAAGTACTGTTACTCATTCCGCTCTG 358848 30 100.0 36 TTCCGCTCTG .............................. CACGTAACTTTCAAGGACATGATATCTTGTAGAAAC 358914 30 100.0 36 TTGTAGAAAC .............................. ACGACTACGGCTAAAGTATTTGCTTCAGCAGTTGGG 358980 30 100.0 36 AGCAGTTGGG .............................. ATCAAATGGCGGTATTCAGAAAATCTGTATGGAAAT 359046 30 100.0 36 GTATGGAAAT .............................. GCAATTTCCAAGGTTTCCATTTGGAAATGCAAAAAA 359112 30 100.0 35 ATGCAAAAAA .............................. TTATGAGCATCATTATCATGTTTCCGCTTTTTAGC 359177 30 100.0 35 GCTTTTTAGC .............................. GGGTAAGATTAAGTCCATGGATAATCGAAGAAGAC 359242 30 100.0 36 CGAAGAAGAC .............................. AATCTCAGTCTGTAGGGTATGGGGCAACCTGCTTAA 359308 30 100.0 38 ACCTGCTTAA .............................. GCTTCTCTGTTTGATCCAGAAGGGATATTCATTTTTTC 359376 30 96.7 35 TCATTTTTTC .......................C...... GTTTCACCAAAGAAAATCTCTTTCATTTTCTTAGT 359441 30 100.0 37 TTTTCTTAGT .............................. AATCTTCAAATGGCGCTGCTGGCATGATATCCTCACA 359508 30 100.0 36 TATCCTCACA .............................. ATATAATCTCTACAAATTTTCGTCATATATCCTTGC 359574 30 100.0 39 ATATCCTTGC .............................. AAAAACTATGAAAACCAAAAGGCGGGGCATTTAAAACTG 359643 30 100.0 38 TTTAAAACTG .............................. ATGTTCACCATCCCATTTCTGATTAAAACAAGTTTCCG 359711 30 100.0 39 CAAGTTTCCG .............................. AAGAGAAATTTTAGGAATACGGCGGCTGGATAATGAAGC 359780 30 93.3 ATAATGAAGC ............T....T............ AACGACTCTT ========== ====== ====== ====== ========== ============================== 51 30 36 GTTAAAATCAGGCCTTAGAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.40,-0.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [311,139] Score: 0.18/0.18 # # Final direction: F [5.46,0 Confidence: HIGH] >NC_007355 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1661115 37 100.0 33 TCACAAAGTG ..................................... TCTTTTTGACATTCAAAATCTGTTTGCAATCTA 1661185 37 100.0 34 TTGCAATCTA ..................................... TCCATTTTTAAATAAACTGGAGGATCATACATTA 1661256 37 100.0 35 TCATACATTA ..................................... TTAAGTTCACGTATAATTAGATACTTAGCTCTTTT 1661328 37 100.0 35 TAGCTCTTTT ..................................... TTCCGGAAAGTTACATCAGAAGAACCTCTGCAACG 1661400 37 100.0 36 CTCTGCAACG ..................................... CTTACAAATGTGTCATTATGTGCTAAGGCTGTAAGG 1661473 37 100.0 GGCTGTAAGG ..................................... CTACAGCCTTT ========== ====== ====== ====== ========== ===================================== 6 37 34 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.16%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.90,-2.90] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1491,558] Score: 0.18/0.18 # # Final direction: F [4.95,0 Confidence: HIGH] >NC_007355 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 366535 23 100.0 50 AGAGGTAGCT ....................... TTTGCATTTCCTCCTTTTCGAAGAAATTTTTCCTGAGTCGAGAGGTAGCT 366608 23 95.7 51 AGAGGTAGCT ......................T CAAGATAATATCTGTTCATTTCTTCCTCCTAATAACCATTCGCGAGCAAGA 366682 23 100.0 46 GCGAGCAAGA ....................... TCGATAGGGTTGAGACAGATGAAAATTGAGAGATTCGCGAGCAAGA 366751 23 95.7 GCGAGCAAGA ..........A............ AGGGATGTTTT ========== ====== ====== ====== ========== ======================= 4 23 49 TCCACTAAAATAAGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:69.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [55.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [288,79] Score: 0.18/0.18 # # Final direction: F [5.09,0.27 Confidence: HIGH] >NC_007355 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 4007378 36 91.7 36 CTATTAATAG ......C..A.........T................ TCATGGTCTTGTGTTCTGTTGCTGATGTCAAAGCTC 4007450 36 100.0 36 GTCAAAGCTC .................................... TTTCTGTACGATCTGGTAATGGTACAGCTAGTTTAG 4007522 36 97.2 37 GCTAGTTTAG ..................T................. GAGAAGCTACAGGACGCTTATAAAACCGCTAAAAAAA 4007595 36 100.0 37 GCTAAAAAAA .................................... ATAAGCACCATTCGAATGGTCGCCAGTGTAACTGTAA 4007668 36 97.2 37 GTAACTGTAA ...................T................ ATGTTATGATTCAATTACTAACCACCGTTTTTGATAC 4007741 36 100.0 37 TTTTTGATAC .................................... GTACAAATCCCGCAGTAGTGAGACTTTCCCCAACTAA 4007814 36 100.0 36 CCCCAACTAA .................................... TCGATCCTTCGATTACTCCCGAACTTTTAAAATCTG 4007886 36 100.0 36 TTAAAATCTG .................................... TCGGCCATTTTATTTTATTAGGATTCCCCCAATCTT 4007958 36 100.0 37 CCCCAATCTT .................................... TCAGTATAAGCCAGAGTCAAAGGGTGCACAGGCATAC 4008031 36 100.0 37 ACAGGCATAC .................................... AGAGGTCGACGATACCAACCAGGATTCTGGCAGTTGG 4008104 36 100.0 38 TGGCAGTTGG .................................... TGCGCTTTCTCAAACAGGCTCTGTATCGTTCGATAATA 4008178 36 100.0 35 TTCGATAATA .................................... TGGAACGGCTGTTGTTGGTGTACTCGGTTGGGAAG 4008249 36 100.0 37 GGTTGGGAAG .................................... ACCTTTCTGTGATACCAAAGAAGTTTCAAAATAATCT 4008322 36 100.0 37 AAAATAATCT .................................... TCATCAGTATATTTTTCTGCAATCGTATCATACAATG 4008395 36 100.0 36 TCATACAATG .................................... TTTATATGGGAATGTCAGTAAACATGTGGTCGGGCT 4008467 36 100.0 35 TGGTCGGGCT .................................... TTGTAAAAGACCATCTGTATAATTGCCTGCAGTTG 4008538 36 100.0 37 CCTGCAGTTG .................................... GGGTTTTGAAGTAAACCTTTTCCCACATTACCCACAA 4008611 36 100.0 36 TTACCCACAA .................................... TGGCGTTAAAGGTTCACCTTCTTGACCAACTCTAGC 4008683 36 100.0 36 CAACTCTAGC .................................... CTTCTCTCCTTCCTTCGCATCGCAGCCGAACCCATG 4008755 36 100.0 36 CGAACCCATG .................................... GGAAGTTTTGAAAACGGGCCAGTCTTCGCTGGGGAG 4008827 36 100.0 39 CGCTGGGGAG .................................... ATACTAAAAACAAAAATCCACCCAACAACAGGGCACCTT 4008902 36 100.0 39 AGGGCACCTT .................................... GAGACGAGACAGTACACAACATGTGAATGCCCATACTGT 4008977 36 100.0 CCCATACTGT .................................... GGCGCTAAGA ========== ====== ====== ====== ========== ==================================== 23 36 36 GCTTCAATTCTGCCACAACCTTTCGGTTATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.20,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1353,171] Score: 0.18/0.18 # # Final direction: R [0.45,0.78 Confidence: LOW] >NC_007426 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 165989 30 100.0 36 AGCAGGGCTG .............................. TGTTGTATCCAACGCCCTACCGATGAACAATAAATC 166055 30 100.0 37 ACAATAAATC .............................. GCTCTTGAGACGGCTGGCTACATCGACGTGCTGCCAG 166122 30 100.0 35 GTGCTGCCAG .............................. GGAAACATCCTTGACGAACTGCGGACGTGGGATGG 166187 30 100.0 CGTGGGATGG .............................. AACACGATGTACCGCTATACGCCGGATGGAGTCGA ========== ====== ====== ====== ========== ============================== 4 30 36 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,8] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-6.20,-5.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [51.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [586,240] Score: 0.18/0.18 # # Final direction: F [1.32,0.37 Confidence: MEDIUM] >NC_007356 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1201786 29 100.0 32 AAAGCTAAAG ............................. CATTTCTCCATCAGCTATAGCACCCACTCTTG 1201847 29 100.0 32 CCCACTCTTG ............................. AATCCAAGTGCCCTCAAATATCAGGCACATTA 1201908 29 100.0 32 AGGCACATTA ............................. TCCAGCTTGTTTGACTGCTGTGCCAACTGCAT 1201969 29 100.0 32 CCAACTGCAT ............................. ACATATCAACCCTTTCATGCTCATAATTTTCC 1202030 29 100.0 32 ATAATTTTCC ............................. CAAATTATGACTAGAATACCTAGTGTAGACAA 1202091 29 100.0 32 GTGTAGACAA ............................. AACTTGGTAACCGGCTTTGATAACCATGCTAA 1202152 29 100.0 32 ACCATGCTAA ............................. ACCAATGGTTAGAGGTGCACCCTTTTTGTAGC 1202213 29 100.0 33 TTTTTGTAGC ............................. GGGAAGCTGGCTCCTTTTAAGTGCCTGCGGCTT 1202275 29 100.0 33 CCTGCGGCTT ............................. GCAAACCCATTAGGGGGTAAGGGGGTATATATA 1202337 29 100.0 32 GGTATATATA ............................. ATCAAAGGACTTGGACTACTACATGGAGTTAC 1202398 29 100.0 32 ATGGAGTTAC ............................. TCTGGGGCAGGTCAGGCCCGCTGGCATGGATA 1202459 29 100.0 32 GGCATGGATA ............................. AAGGGCATATAACTCCTGTTCCAGCCTTCAAA 1202520 29 100.0 32 AGCCTTCAAA ............................. TTCTGCTATGTATTCTCTTTTAGCCCTGGTAG 1202581 29 100.0 32 GCCCTGGTAG ............................. GTATTCAAGCTGTATCCGCTTGGAGATACCCA 1202642 29 100.0 32 GAGATACCCA ............................. ACCGAAACATTGAGTCGCCTCTTTATACCAAT 1202703 29 100.0 32 TTATACCAAT ............................. CTGTCTATTTCTGAATTAGCATAACTACTGAA 1202764 29 100.0 33 AACTACTGAA ............................. GGCAACCCTGTAATGCCTGTTAATCTCTGTAAA 1202826 29 96.6 32 TCTCTGTAAA T............................ ATATGTTTTTCAGTATCCCAGAAGTCACGTAC 1202887 29 100.0 AGTCACGTAC ............................. CCTAAAATAA ========== ====== ====== ====== ========== ============================= 19 29 32 CGGTTCACCCCCACATGCGTGGGGAATAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-10.90,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [398,248] Score: 0/0.18 # # Final direction: F [0.78,0 Confidence: HIGH] >NC_007406 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 2121506 32 100.0 34 TCGACTTCCT ................................ TTGTCAGCCTCACGTAAGGCCCGCCCGACGGCGT 2121572 32 100.0 34 CCGACGGCGT ................................ GCAGGGCATCGTGTGGAGTGGCCAGCTTGTGCTG 2121638 32 100.0 33 GCTTGTGCTG ................................ TCTTTGGCGTGTCCCTTTAGTCGCCATGATTGA 2121703 32 100.0 34 CCATGATTGA ................................ GGGTTGATGCTTTTTGCGATCTCGTCAAGAAGTG 2121769 32 100.0 34 TCAAGAAGTG ................................ AACCGGGATGGTGCGGGTATCTGACACTGGAATT 2121835 32 100.0 34 CACTGGAATT ................................ CGCCGATCGGGATGGGTGGCGTCCCGTATTTGTA 2121901 32 100.0 34 CGTATTTGTA ................................ CCAGCGCCCCACACAAATGAAGGCATCATGTCGG 2121967 32 100.0 34 ATCATGTCGG ................................ TTAGTGGGCTGCGGAAACGGTATGCGCCATACCT 2122033 32 100.0 33 CGCCATACCT ................................ GATGACCCGCGCGATCAGCGCGGCCATGGTGAT 2122098 32 100.0 34 CCATGGTGAT ................................ AATACGATCGCGACCGCATGAAGCTAGCCGATGT 2122164 32 100.0 35 TAGCCGATGT ................................ GCCTTGATCTTGTCGCGAGTGTCTTGATTGTGCCG 2122231 32 100.0 36 GATTGTGCCG ................................ CAGACTCGCTGGCACGAGTCGGACCTCGCCGGATGG 2122299 32 100.0 34 CGCCGGATGG ................................ ACCTATCTGGCGTATGATTTCTATCATTATAATT 2122365 32 100.0 33 CATTATAATT ................................ CATATCTGCAACCGAAGGCGCGCACCCGTAGCT 2122430 32 100.0 33 ACCCGTAGCT ................................ TCCGAATGCGTCGCTACCAAACAGCAACTGGAT 2122495 32 100.0 34 GCAACTGGAT ................................ TGCCGAGTCTGGCTCTACGTTGCCCCAATGACAG 2122561 32 100.0 36 CCAATGACAG ................................ CCAACTCGACGCCCAAAAGCACACGGCGGAAACGGC 2122629 32 100.0 CGGAAACGGC ................................ TTACCCTCA ========== ====== ====== ====== ========== ================================ 18 32 34 GTTTCGACCCACGCCCCCGCGAAGGGGGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.30,-8.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1107,225] Score: 0.18/0.18 # # Final direction: F [0.55,0.37 Confidence: LOW] >NC_007413 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1234556 37 100.0 34 GACCCCGGCT ..................................... TGGTTTTTCTCGCGTTATGAATGTTTTTGCTTTT 1234627 37 100.0 34 TTTTGCTTTT ..................................... AACGTTATGCCACTTCAAGGCAATAGCTTCCGAC 1234698 37 100.0 32 AGCTTCCGAC ..................................... CTGCGGTCAATTGCCTTTGTGCATCAGTTTGA 1234767 37 100.0 34 ATCAGTTTGA ..................................... CTAACATCGCCCTAGCTAAACCAATTAAATTCAA 1234838 37 100.0 39 TTAAATTCAA ..................................... TAAGGTTGAGCTAACTAATAAACCGCCGGAAGAAATAAC 1234914 37 100.0 34 AAGAAATAAC ..................................... TAACTTATTTCTAACTAGTAACTGAAGTTGATAA 1234985 37 100.0 34 AAGTTGATAA ..................................... CAATAATTATTAGTATTATTTCCATTTTCCTCCT 1235056 37 100.0 34 TTTTCCTCCT ..................................... CAGTACAAGATGCTAATACAATTACTATTCAAAA 1235127 37 100.0 40 CTATTCAAAA ..................................... AAGCGTAAATCCGTTTTTAGCAGGTACATCTGGGGCAACG 1235204 37 100.0 33 TGGGGCAACG ..................................... AGGAACAATTGTTCCTTAAGCCTATGCCATCAG 1235274 37 100.0 36 ATGCCATCAG ..................................... CGAATCCCATCCTCTCCGTTATTCCAGCGATTTTAA 1235347 37 100.0 36 GCGATTTTAA ..................................... CAAACCCTTGCTGTATATGACTTGATCCAGATGATC 1235420 37 100.0 36 CCAGATGATC ..................................... CAATTAATTTGGAATGTTGAAAGCTTTCATGGCTTA 1235493 37 100.0 34 TCATGGCTTA ..................................... ATGCTTAGTCTTCCGCTACATCACAGAAAGACTA 1235564 37 100.0 38 AGAAAGACTA ..................................... TTAGTTTTTTCTAGCTCTTGTTGTAGGAGTTGAATTTG 1235639 37 100.0 34 GTTGAATTTG ..................................... AGACTAGTCCCGGCAAAGTGGCGGAAACAGGAAC 1235710 37 100.0 37 AAACAGGAAC ..................................... TGCGGCAACAGTACATAATGCTTTTCAACTTTCAAAT 1235784 37 100.0 33 ACTTTCAAAT ..................................... TCTTTGGCTTTTAATTCATCTGGTTCTGGTGTC 1235854 37 100.0 35 TTCTGGTGTC ..................................... GAAGCATCTCACACCAGATGGCAAACTACAGCAAC 1235926 37 100.0 36 CTACAGCAAC ..................................... ACTAGTACACCCTGGGTGGCTAGAGACACGCTAAGA 1235999 37 100.0 34 CACGCTAAGA ..................................... AATTATTTTCTTGATTGGCTGCTGTATGGCTTTG 1236070 37 100.0 37 TATGGCTTTG ..................................... AAGTCGGTAGTGATTTTAAGAAAGTTATCCTCTGCGG 1236144 37 100.0 42 TCCTCTGCGG ..................................... TTAGCTTAAGCCTATCCCTGACTATTCCCAGCACTTTATCAA 1236223 37 100.0 34 ACTTTATCAA ..................................... AGCAGATGACCACTCAGACCAAGGACGCGGAGAG 1236294 37 100.0 33 ACGCGGAGAG ..................................... CAGGAATTGCAAAATCTTCAGGTTCATTAGTGA 1236364 37 100.0 34 TCATTAGTGA ..................................... CTATATAGTTGTTTTGGATCTAGGTCTAAAAGTA 1236435 37 100.0 35 TCTAAAAGTA ..................................... TAGAAAAGCTTGGTCAATGTCTCAAGAACTTTGGG 1236507 37 100.0 34 GAACTTTGGG ..................................... CATTAAAATTCAAAAACTAGGTGCAGACGATCGC 1236578 37 100.0 34 AGACGATCGC ..................................... CAGAAAAAAGATAGAAGCCGATTTGCGGGAAGAC 1236649 37 100.0 34 GCGGGAAGAC ..................................... CGCCTACGAGGGTACAGAGTTCGCCCCCATGAAC 1236720 37 100.0 35 CCCCATGAAC ..................................... ATCGCTTAATTGTTGCTGTACTAGTGATGCGGCTA 1236792 37 100.0 32 GATGCGGCTA ..................................... AGCGCCTCTGAGGTTAGCGCTTCTGAGGTTAG 1236861 37 100.0 34 CTGAGGTTAG ..................................... CATTAAAATTCAAAAACTAGGTGCAGACGATCGC 1236932 37 100.0 34 AGACGATCGC ..................................... CAGAAAAAAGATAGAAGCCGATTTGCGGGAAGAC 1237003 37 100.0 34 GCGGGAAGAC ..................................... CGCCTACGAGGGTACAGAGTTCGCCCCCATGAAC 1237074 37 100.0 CCCCATGAAC ..................................... ATCGCTTAAT ========== ====== ====== ====== ========== ===================================== 36 37 34 GTTTTAATTAACAAAAATCCCTATCAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.27%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.50,-7.40] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [269,377] Score: 0/0.18 # # Final direction: F [4.5,0.27 Confidence: HIGH] >NC_007413 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2395671 37 94.6 36 AGCAGAATCA -...T................................ ATAATACGGTTAAGAAACAATATTCAGATATATTGG 2395744 37 100.0 33 GATATATTGG ..................................... TTTATGCGGTCTTTGTGCTGTTGGTAATACGTG 2395814 37 100.0 34 GTAATACGTG ..................................... CGTTTCCGCCATTGGCTTTTCATACTGGGAAGAA 2395885 37 100.0 34 CTGGGAAGAA ..................................... ATATTTCTAGAAAATCATCAAGCTTTCTCGCCCA 2395956 37 100.0 32 TTCTCGCCCA ..................................... GATATAGCAGAGAAACATGGATATGCACCAGT 2396025 37 100.0 33 ATGCACCAGT ..................................... ACGATATAGGGATTTAACCTTGCCTTTAGCATC 2396095 37 100.0 34 CTTTAGCATC ..................................... TAGGTCAGGATTTGTTAACAAAATATCCGTTTCG 2396166 37 100.0 37 ATCCGTTTCG ..................................... CGGTAATCTTTGCTTTCTGGCGTTCTTTAGGATTCTT 2396240 37 100.0 34 TAGGATTCTT ..................................... GGCTTTGGCTATACTTTCAGCCTTCAGATGCTCT 2396311 37 100.0 35 CAGATGCTCT ..................................... TCGTTATACACGACGGTATTAACGTCGATAATTAC 2396383 37 100.0 34 CGATAATTAC ..................................... ATGATTTTCAGTGGCTAGCGATTAACACAATGAA 2396454 37 100.0 34 ACACAATGAA ..................................... CAGATTACGGAGAAGTTGGCGGTTCTTGGTCGGA 2396525 37 100.0 34 CTTGGTCGGA ..................................... CACAAAGGGATTAACTTTAGAAACATAGGGTTTG 2396596 37 100.0 33 ATAGGGTTTG ..................................... GCCAAAGTTACCATGCGTAAGTCGTCCGAGTTA 2396666 37 100.0 35 GTCCGAGTTA ..................................... TCACAAACGACTACTAAATGAAGATGCAAAGCAGG 2396738 37 100.0 36 GCAAAGCAGG ..................................... TTTGTTGAATTAAAAAAGCGTACTCTTTTTGAGAGT 2396811 37 100.0 34 TTTTGAGAGT ..................................... ATTACCCTCCGGCGTAAAATTTAAGCTTCAAAAT 2396882 37 100.0 38 GCTTCAAAAT ..................................... GGATGAACTTTTTCTCCTGTATTGAGATAGCTTCCCCG 2396957 37 100.0 36 AGCTTCCCCG ..................................... TAGTTCACCGTTACTCTCAGCCCATTTATCATATAT 2397030 37 100.0 35 TATCATATAT ..................................... CCCAGAAGAAGAACTGCCAGACCCATCATAACGTT 2397102 37 100.0 34 TCATAACGTT ..................................... TGATGTTTCGTATTTCAACTTACGCAAGAAAGTA 2397173 37 100.0 33 CAAGAAAGTA ..................................... TCGTAGCAGACTTTACATAGCTGCCTTTTGCGT 2397243 37 100.0 34 CCTTTTGCGT ..................................... TAAAGCAGGTACAGTTACAATCCTTTCCTCTTTA 2397314 37 100.0 36 TTCCTCTTTA ..................................... AAGGGTTAAGGTTATTCCAGGTGGTGCAGAGGGATT 2397387 37 100.0 33 CAGAGGGATT ..................................... CTCTAATTAAGTTCATTTTTAATTAAAATACTC 2397457 37 100.0 33 TAAAATACTC ..................................... TTTGTGTGGGTGTCAGCAATATGTTGATTCTCT 2397527 37 100.0 37 TTGATTCTCT ..................................... TCTACGTGATCAAATAGCTCAAATTGAAGCTCAGAAA 2397601 37 100.0 35 AGCTCAGAAA ..................................... ACTTGACTGAGATATTGGTTGCTGAGTAATCGGCG 2397673 37 100.0 34 GTAATCGGCG ..................................... CTCTTTCACGGCTATGCTGCAAGGCACTAGTTTT 2397744 37 100.0 34 CACTAGTTTT ..................................... ACAATCTGAAGCCAACAAAGACTATCAATCATGT 2397815 37 100.0 33 TCAATCATGT ..................................... TGTCTTTGTTGAGGCTTGTTCAGCTATTGAGTA 2397885 37 100.0 32 CTATTGAGTA ..................................... TAACATAGGTACTATTTATCTACGATGGGAAA 2397954 37 100.0 34 CGATGGGAAA ..................................... CGTGGAATTTCAGTACAAATCTAAACCCGCGGAC 2398025 37 100.0 34 ACCCGCGGAC ..................................... CCTATCACTAAGCAGGGAAAAACATTTTTCCCCT 2398096 37 100.0 35 TTTTTCCCCT ..................................... CAGTAATGTTATGGAGTCGTCTAAGTCTCCAAGAA 2398168 37 100.0 35 TCTCCAAGAA ..................................... ATCGGTGGTGGATTGTTTTAGTACCTAGTGTACTC 2398240 37 100.0 37 TAGTGTACTC ..................................... CACCGCAGCGCCTCCAACTGGGTACTCAACTGATTAC 2398314 37 100.0 32 AACTGATTAC ..................................... CAACTTTATATATAGTTTTCACCCCTAATGAT 2398383 37 100.0 34 CCCTAATGAT ..................................... TTCAGATGAGCTACCAGATGATTGCAAGTCTCGC 2398454 37 100.0 34 CAAGTCTCGC ..................................... CCAGGATTACCAGCGCGTTTATTTACAGCGTCAG 2398525 37 100.0 34 ACAGCGTCAG ..................................... AATCACGATAGGAATAACTATTGCCTGTACACTT 2398596 37 100.0 35 CTGTACACTT ..................................... TTTATCTCAAATCTCCTATGAAGTACAGTCTTTAA 2398668 37 100.0 CAGTCTTTAA ..................................... CGCTTGGCTC ========== ====== ====== ====== ========== ===================================== 43 37 34 GTTTCAATCCCTGATAGGGATTTTAGAGGGTTTTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.16%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.40,-7.50] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [217,257] Score: 0/0.18 # # Final direction: R [0,4.91 Confidence: HIGH] >NC_007413 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 4334197 37 100.0 35 GGCTATCGCT ..................................... GGGCTGGGTCATCATATTGATCTCGCTCAGTCCGG 4334269 37 94.6 35 CTCAGTCCGG ...................................AC GATCGCAACCCTTGATTCATGAAATGCTTGGTAGC 4334341 37 100.0 GCTTGGTAGC ..................................... ATTCCCAGAGGCGAATGTA ========== ====== ====== ====== ========== ===================================== 3 37 35 GTGCTTTAACATTAGATGTCGTTAGGCGTTGAGCAGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.05%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.10,-0.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [278,70] Score: 0.18/0.18 # # Final direction: F [0.96,0 Confidence: HIGH] >NC_007426 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1578925 37 100.0 35 NNNNNNNNNN ..................................... AAGTCCCAAGCGTGACTGAAGACTTAGAGTTTGCG 1578997 37 100.0 38 NNNNNNNNNN ..................................... ATTACGGCGAATGGACGCTCGATATGACGTTTGACGAT 1579072 37 100.0 34 NNNNNNNNNN ..................................... GTTGCGGTCGACGATTCAGGCGACCAACTCGAAC 1579143 37 100.0 35 NNNNNNNNNN ..................................... AAAGATACGCTCAGGCGTTGTCTCCCGCAACCCAT 1579215 37 100.0 36 NNNNNNNNNN ..................................... AACGTCCCTGATTCAACGCGGATTGGGTCGGTTGCA 1579288 37 100.0 35 NNNNNNNNNN ..................................... TGAAGGTAAAGATATCGTCGTCAATCATGAAAACC 1579360 37 100.0 36 NNNNNNNNNN ..................................... TCGCTAGTCATCGGTCAGGCCCTCCGGGCTGGTGGT 1579433 37 100.0 34 NNNNNNNNNN ..................................... CGTCGGCGTCTCGCTCGACGACCGTGCCCGTCGA 1579504 37 100.0 1 NNNNNNNNNN .........................TA.......... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 9 37 35 GTCGAGACGGACTGAAAACCCAGAACGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [14,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.60,-3.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [119,429] Score: 0.18/0.18 # # Final direction: F [5.92,0.18 Confidence: HIGH] >NC_007413 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 5764010 37 100.0 33 TGCCTGAGCC ..................................... ATACCTAGATTCCCACCGAATACAATCCAATTG 5764080 37 100.0 37 AATCCAATTG ..................................... AATTCATTAAGCCTAGACGATCTTGTCTGCACTCGAT 5764154 37 100.0 44 TGCACTCGAT ..................................... GATGAGCTAATTTCCAATGCCAGTCTTTACGACGGTTGGCGATG 5764235 37 100.0 34 GTTGGCGATG ..................................... AGCAATTCTCAAATCAGCCCGCCACAAGCAATTT 5764306 37 100.0 35 CAAGCAATTT ..................................... GTCAATTGGTTTAAGTTGTAGCACTCCTATCTTAT 5764378 37 100.0 35 CCTATCTTAT ..................................... ATCGCAAGAGATGTAACGCCTAAGAGTAAAAAAGA 5764450 37 100.0 36 GTAAAAAAGA ..................................... GTAAAAATCATGATTTTTACTATTGAAAAAATCCTG 5764523 37 100.0 39 AAAAATCCTG ..................................... CAATTTAACTTATTTGATAGTGATATCTATCGGTATATA 5764599 37 100.0 35 TCGGTATATA ..................................... AAAGAAGTTGCAAGTAGAGCTAATTTAGCAATCAC 5764671 37 100.0 41 TAGCAATCAC ..................................... ACTATGTATGGGGGTGAATATTAGTGGCATTTCGTCCACCC 5764749 37 100.0 34 TCGTCCACCC ..................................... ACTATTCTCTGCCGCTAAATCAAAAACAGAGCTA 5764820 37 100.0 35 AACAGAGCTA ..................................... CAACTTACTGGGACAACCGCAGCAACCACCTTAAT 5764892 37 100.0 33 CCACCTTAAT ..................................... GAGTTGGTTCGACTGATAGTTGATTTGAACAAG 5764962 37 100.0 33 TTTGAACAAG ..................................... GCACCTGAGATGACGCAAGCAGCAAAGGCAAGC 5765032 37 100.0 32 AAAGGCAAGC ..................................... AAAGTTGGTTCCGCCATAAAACTGATTTTTGA 5765101 37 100.0 34 TGATTTTTGA ..................................... GGGAACGCGCCCTTAAGGTTTATGAAATTGTCTA 5765172 37 100.0 33 AAATTGTCTA ..................................... TAAATCGGTCGAGCTAGTAACGCTTCGGCTTGC 5765242 37 100.0 34 TTCGGCTTGC ..................................... AGTGGTATCTTTGGCACAATCTTCAGGATTGTCG 5765313 37 100.0 33 AGGATTGTCG ..................................... CGAGTTACCGCCCCTTTAATCGGTAGGGACAGG 5765383 37 100.0 33 TAGGGACAGG ..................................... GGAATCAGGGAAAGGGTTAGGACCTGCAAGATT 5765453 37 100.0 35 CTGCAAGATT ..................................... AGCGAATTAACACTTTATTAACCTTCTCTATTTGT 5765525 37 100.0 35 CTCTATTTGT ..................................... TAAATTCCTTAGCTAAATCCAATAAGGCCAAGGAA 5765597 37 100.0 33 GGCCAAGGAA ..................................... TATGGAATCCTGGCAACCTACGGGCTGAGGAAT 5765667 37 100.0 36 GCTGAGGAAT ..................................... AGAAGACGGGGAGGAGGAGAAATGCAAGCTAAAACG 5765740 37 100.0 34 AGCTAAAACG ..................................... CTGGATATTTATCCAAATGCCGATCCTCTATCGA 5765811 37 100.0 33 CCTCTATCGA ..................................... AGCTGCGCGACATCGCCAAGTATTACAAAATCC 5765881 37 100.0 34 TACAAAATCC ..................................... CTAGCGATCGCCGCCGCCTTTACCCCTTCTAAAT 5765952 37 100.0 36 CCTTCTAAAT ..................................... CCTATACAGGGTTCACAAACACTATCCAATCTAGGG 5766025 37 100.0 42 CAATCTAGGG ..................................... AAAAAATCCAAAAGGGCATATATCTCTTTGTATCGATTCGAT 5766104 37 100.0 34 TCGATTCGAT ..................................... AAGTAAGCCAATACTGAAGTTTTCGTGTTATATT 5766175 37 100.0 35 GTGTTATATT ..................................... CAACCCAGAATCGGCTTATCATACACCAGAGATAA 5766247 37 100.0 37 CCAGAGATAA ..................................... TCCTTAATTGACTCTAAAGCACTATATACAATATCAA 5766321 37 100.0 34 ACAATATCAA ..................................... GCAACATTCGTTTCTACAATAATATTGGTGTAGC 5766392 37 100.0 TTGGTGTAGC ..................................... GTAGGAAAAA ========== ====== ====== ====== ========== ===================================== 34 37 35 ATTGCAATTAACTAAAATCCCTATCAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.50,-7.40] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [263,136] Score: 0/0.18 # # Final direction: F [4.5,0.27 Confidence: HIGH] >NC_007427 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 97469 20 100.0 51 CCGGCGGAGA .................... TCAATCATGTGGTATCGTATCGCAGCCTGTCGAGCTCTTCGTCCGTTCACG 97540 20 100.0 59 TCCGTTCACG .................... CTGGATATGTAATATCGTGCCACAGCCGTGGCGATAATCGACTGACACTGTTTCGATTG 97619 20 100.0 57 GTTTCGATTG .................... TTAGCGGCTGGAGACCGTGCCACATCGCCATCCGCACTCAAGCAGCGTTTCTCGATA 97696 20 95.0 TTTCTCGATA ...................T TCAACCGTG ========== ====== ====== ====== ========== ==================== 4 20 55 CACCCCTCTATCGATGTGTA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [30.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [172,126] Score: 0/0.18 # # Final direction: R [0.41,0.64 Confidence: LOW] >NC_007413 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 5227213 37 100.0 35 GACCTGGACA ..................................... TCTCTGCGGCAAACAGTGCCTATGCTGCGGGCGGG 5227285 37 100.0 38 TGCGGGCGGG ..................................... TATATATTTCTCTATCGCAGACAATCTTCTGTTAATGC 5227360 37 100.0 40 CTGTTAATGC ..................................... ATTCCTATCGTGATTGAACTGACTATCAACGTGAGGACTG 5227437 37 100.0 36 GTGAGGACTG ..................................... CCTAACTTACAACGCCCCACTAATTCACAATATTTG 5227510 37 100.0 39 ACAATATTTG ..................................... GATAGAGATGATTGGTCGAGGGGAAATATCTCTGGCCAA 5227586 37 100.0 44 CTCTGGCCAA ..................................... CACTTTAGACGAAACTAAAATATATAGCGATTGTACAAGTCAAG 5227667 37 100.0 35 ACAAGTCAAG ..................................... CTAAAACAGTTCCCTCAAGAGTGTTCCCAATCAAT 5227739 37 100.0 37 CCCAATCAAT ..................................... TTAATTTTGATGTTCCTTGGACGTGGTTTTAATTCGG 5227813 37 100.0 33 TTTAATTCGG ..................................... CTTGCATTTTGATAAAAAAGATAAGTAGAGTAA 5227883 37 100.0 35 AGTAGAGTAA ..................................... AGGAACAATTGTTCCTTAAGCCTATGCCCTCAGTT 5227955 37 100.0 35 GCCCTCAGTT ..................................... GGCAGATAGTGGATGGGGCGGTAGATGTTCGGCAA 5228027 37 100.0 33 TGTTCGGCAA ..................................... TACTCGCGATCGCTGCATCCTCAACGCCCAAAA 5228097 37 100.0 35 ACGCCCAAAA ..................................... GTGGCTGGGACTAGAAGGGCTAGCCGAATCACTGG 5228169 37 100.0 35 GAATCACTGG ..................................... TGGCAATACACGGGAGTAGATGATACTTCTGAGGA 5228241 37 100.0 35 CTTCTGAGGA ..................................... ATCCAGTAGCAGTTCGCCCTCATCATTCCAGTAAG 5228313 37 100.0 34 TTCCAGTAAG ..................................... CGGCGGCGCTGCGGCTGGTGGCGTACTCACAGAT 5228384 37 100.0 36 ACTCACAGAT ..................................... CTTGCCATTTTGACCTTCCATATTGAACACCCCAAT 5228457 37 100.0 32 ACACCCCAAT ..................................... ACCTCAGTTGCTCTGTTCTTGATTCCGCACAG 5228526 37 100.0 34 TTCCGCACAG ..................................... ATTTTAAAATCGGTGCAACCGGAGTTCGGCTCAA 5228597 37 100.0 34 TTCGGCTCAA ..................................... GAGAGGCAGATCACCTTGTTCTATTAAGTGAGCG 5228668 37 100.0 38 TAAGTGAGCG ..................................... AAAAGATGTCGATCAAATGAAGCGGATAAATAGCCACA 5228743 37 100.0 37 AATAGCCACA ..................................... TAAGAAGGAGAGGTGATGTTAATTCACTTAGTGGAAC 5228817 37 100.0 35 TTAGTGGAAC ..................................... AAAGACTTTTTAGCCGAGACGCAGGCAGGAAGAAG 5228889 37 100.0 33 CAGGAAGAAG ..................................... AGCTTCAACGGCGGCGGGACTAGCTACATTCCC 5228959 37 100.0 33 CTACATTCCC ..................................... AAAAGAAATTTAGCGACTTCTGCATTCTGTTCG 5229029 37 100.0 35 ATTCTGTTCG ..................................... GCGTAAACTCTTCCGCCCTTAAATTGCGAGAAAAG 5229101 37 100.0 34 GCGAGAAAAG ..................................... GGAAGCGTCGCTAAAACTCAAGCTATTTTAGAAA 5229172 37 97.3 ATTTTAGAAA ....................................C GTGCTAGCC ========== ====== ====== ====== ========== ===================================== 28 37 35 GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.50,-7.40] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [58.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [258,468] Score: 0/0.18 # # Final direction: F [5.18,0 Confidence: HIGH] >NC_007428 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 27 37 100.0 38 AGAGTTTGCG ..................................... ATTACGGCGAATGGACGCTCGATATGACGTTTGACGAT 102 37 100.0 34 GTTTGACGAT ..................................... GTTGCGGTCGACGATTCAGGCGACCAACTCGAAC 173 37 100.0 35 CAACTCGAAC ..................................... AAAGATACGCTCAGGCGTTGTCTCCCGCAACCCAT 245 37 100.0 36 CGCAACCCAT ..................................... AACGTCCCTGATTCAACGCGGATTGGGTCGGTTGCA 318 37 100.0 35 GTCGGTTGCA ..................................... TGAAGGTAAAGATATCGTCGTCAATCATGAAAACC 390 37 100.0 36 CATGAAAACC ..................................... TCGCTAGTCATCGGTCAGGCCCTCCGGGCTGGTGGT 463 37 100.0 34 GGCTGGTGGT ..................................... CGTCGGCGTCTCGCTCGACGACCGTGCCCGTCGA 534 37 94.6 TGCCCGTCGA .........................TA.......... CTGCCGGTGA ========== ====== ====== ====== ========== ===================================== 8 37 35 GTCGAGACGGACTGAAAACCCAGAACGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [14,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.60,-3.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [35.0-35.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [28,429] Score: 0.18/0.18 # # Final direction: F [5.65,0.18 Confidence: HIGH] >NC_007432 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 986377 36 100.0 30 NNNNNNNNNN .................................... AAATCGATCTGGTCAGTTTAATACGCCTTA 986443 36 100.0 30 NNNNNNNNNN .................................... ATCTGAAAACCCTTGATACATATAGGTTTT 986509 36 100.0 30 NNNNNNNNNN .................................... TCCACCAGTACCACCAGCAACTAATAAATG 986575 36 100.0 30 NNNNNNNNNN .................................... TGACAGATGAAACAAAAAAAGTCTACCTAA 986641 36 100.0 30 NNNNNNNNNN .................................... ATGATATCATCGGCTTCATAATGTTCCAAT 986707 36 100.0 30 NNNNNNNNNN .................................... CTGCTACTAACTCATCTGGTGTAACTTGTT 986773 36 100.0 30 NNNNNNNNNN .................................... GGGTCCAAATCAGCAATCTATGCTAAAAAT 986839 36 100.0 30 NNNNNNNNNN .................................... CAACCCTATGTTTGATAATATTTTAGACGT 986905 36 100.0 30 NNNNNNNNNN .................................... AAGTGAAGTTGAATTTTATTTGAGATACTA 986971 36 100.0 30 NNNNNNNNNN .................................... AAGTGCCACAGTTTGTGGCTGATTGGATTG 987037 36 100.0 30 NNNNNNNNNN .................................... CATTCAAGGACTACCCTCAACAGTAACTCT 987103 36 100.0 30 NNNNNNNNNN .................................... TTCTATCTTCTGAAGATATTTCACAAGTGA 987169 36 100.0 30 NNNNNNNNNN .................................... TCAGCGAGATGCTCTAAGTAAGCATGTTGA 987235 36 100.0 30 NNNNNNNNNN .................................... TCTTCTTTTTAATTCTTCTAACACTCCATC 987301 36 100.0 30 NNNNNNNNNN .................................... ATCTTCTTTTGACCTAACAAAAGGATATGT 987367 36 100.0 1 NNNNNNNNNN ...................ATT.TGCTAGGAC.TCA NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 16 36 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.20,-0.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [102,559] Score: 0.18/0.18 # # Final direction: F [0.78,0.45 Confidence: LOW] >NC_007434 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 182490 20 100.0 44 NNNNNNNNNN AGA..T..T....G.....G ACGACGTCTACTTTGATGGTTGCCATATCGACTCCTGTCGATCG 182554 20 100.0 27 NNNNNNNNNN .................... ACTCCGATCCCATGCCGTGGTTGGCCA 182601 20 100.0 26 NNNNNNNNNN .................... TACTCTGGCCCCGCGGCGGTCGATCG 182647 20 100.0 27 NNNNNNNNNN .................... ACTCCGATCCCATGCCGTGATCGGCCG 182694 20 100.0 1 NNNNNNNNNN .....C......G...A.G. NNNNNNNNNN ========== ====== ====== ====== ========== ==================== 5 20 31 GAGTCAGCGCTTCAGCGCTT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [7-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [30.0-31.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [614,159] Score: 0.18/0.18 # # Final direction: R [0.18,0.78 Confidence: MEDIUM] >NC_007484 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3128058 28 100.0 32 TTAATTTACT ............................ TACCAAGTACATCAATATCTCTGGAGTTATTT 3128118 28 100.0 32 GGAGTTATTT ............................ TAGACAGCATTCTGAGCTGGGCGGTGGCGGTA 3128178 28 100.0 32 GGTGGCGGTA ............................ AATTTAAAAAGAACAGAAGTCCCGTGTTATCG 3128238 28 100.0 32 CGTGTTATCG ............................ ACCTACTCACCAAAGATTGGGGTTTATCTATC 3128298 28 100.0 32 TTTATCTATC ............................ ACCCTGGGGCTAGGCTTGGAAGTCAAGCGCGT 3128358 28 100.0 32 TCAAGCGCGT ............................ GCTATAAAAGTTAATTAGTGAGAAAAGGGGAT 3128418 28 100.0 AAAAGGGGAT ............................ GAAGCAAGTT ========== ====== ====== ====== ========== ============================ 7 28 32 GTTCACCGCCGCACAGGCGGTTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [7,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-9.80,-9.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [133,439] Score: 0.18/0.18 # # Final direction: F [1.01,0.18 Confidence: HIGH] >NC_007498 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1134549 29 100.0 33 NNNNNNNNNN ............................A GTCCGCCAGTCGTTGAACACCCGGCGACAAACA 1134611 29 100.0 32 NNNNNNNNNN ............................T TTCCCGCGTGTCCCTGAGCTTGTTAAGCTTGC 1134672 29 100.0 32 NNNNNNNNNN ............................. CATTACGAGTGGGGAACCGAAAGCGTCAAGTT 1134733 29 100.0 32 NNNNNNNNNN ............................. TTTGGTAGGACGTGGCATGCTCAATAGGTGGG 1134794 29 100.0 32 NNNNNNNNNN ............................. TCGGCAGCGGCACCGGAAACGATGTGCTGTAA 1134855 29 100.0 32 NNNNNNNNNN ............................. TTCTGTTTTGCTCATGCTGCCTCCCTTATCGC 1134916 29 100.0 32 NNNNNNNNNN ............................. CCTGCCAAGGGTGGTTATTTTCTCGATGAAAT 1134977 29 100.0 32 NNNNNNNNNN ............................. GCCTGTTTGCCCTGATTTCCTCGGTGACTACG 1135038 29 100.0 32 NNNNNNNNNN ............................. TATCGCTTCGAGCATCATGTAAATCGCCTTTT 1135099 29 100.0 32 NNNNNNNNNN ............................. ATGGACGAGAACTACAACCTGACATACGAGGT 1135160 29 100.0 32 NNNNNNNNNN ............................. TTTTTCGACCATCTCGTCTTCGAGCTTTACGC 1135221 29 100.0 32 NNNNNNNNNN ............................. TGCCTTTATTTCGTTGCGGCAAACTTCTACGT 1135282 29 100.0 32 NNNNNNNNNN ............................. GTTGGGCCTGTTACAGCCGAATGGATTAACCG 1135343 29 100.0 32 NNNNNNNNNN ............................. GAAAATAGATGGCAACAAAAGTAGGAAATTTA 1135404 29 100.0 32 NNNNNNNNNN ............................. TGGAAATGATTGGAGAAGAGCAACACCCAATA 1135465 29 100.0 32 NNNNNNNNNN ............................. AGCACCCGGCAAATGTGGAAATGCACGTTGAC 1135526 29 100.0 32 NNNNNNNNNN ............................. GTGCTATCGTCTTTCATTCCCCACCTCCATAC 1135587 29 100.0 32 NNNNNNNNNN ............................. TTGTACGGTGCTTCTGTAATGCCCTGACCAAG 1135648 29 100.0 32 NNNNNNNNNN ............................. GAGAACTCGCCAAGGATGTCAACAGCGTTGTC 1135709 29 100.0 32 NNNNNNNNNN ............................. GTTATTACCGTCTCCCCGTCCACGCTGAAACA 1135770 29 100.0 32 NNNNNNNNNN ............................. GAACAGATCCTCCACCTGCTGGCGCTCGCTGT 1135831 29 100.0 32 NNNNNNNNNN ............................. AAGTTGAACACTCCAACAAAAAGAAAAGGCCA 1135892 29 100.0 32 NNNNNNNNNN ............................. GTTTGGCTATGCCGATGCTGAAGTGAGCGTAA 1135953 29 100.0 32 NNNNNNNNNN ............................. CTCGATCACGCCGCGCCTGTAAATCGTTCAGT 1136014 29 100.0 32 NNNNNNNNNN ............................. TATATCCCGAATCCGTGGTTGACAATGGTGAT 1136075 29 100.0 32 NNNNNNNNNN ............................. GGGAGGATTTTGATGAACTGATACGCCAGCAC 1136136 29 100.0 32 NNNNNNNNNN ............................. GACGACAACACGCCGTTTCCGACGTTGCCCGG 1136197 29 100.0 32 NNNNNNNNNN ............................. GCAGCCGTGCCGTTTTCCTTACCAACATTATT 1136258 29 100.0 32 NNNNNNNNNN ............................. CTTTTTGATGTCGTCAATCTTGGGGTTGAAAC 1136319 29 100.0 32 NNNNNNNNNN ............................. GATTGGGGCTGGCCGAAAAGCGGAAAGCTCAG 1136380 29 100.0 32 NNNNNNNNNN ............................. ATAGACGACAACCAGGTGTTGTTGTTTGAGAG 1136441 29 100.0 32 NNNNNNNNNN ............................. GCGGATGGAAAAGTCTTTACGCTCGACCTGTT 1136502 29 100.0 32 NNNNNNNNNN ............................. GGCATCTCTGCGAAAAATCATAGGGTGACAAT 1136563 29 100.0 32 NNNNNNNNNN ............................T GTTGAAGATGGGATCAATTTTTTGTTTCGGGC 1136624 29 100.0 32 NNNNNNNNNN ............................. CTGGCGCAGTTGTTTCCACTGACCCAGCACCA 1136685 29 100.0 32 NNNNNNNNNN ............................. ATATGGTTATAACAAAAAACAAATCATGGAAG 1136746 29 100.0 32 NNNNNNNNNN ............................. CCGCTTGACTTCCACCGATGCCAAGACTGTGC 1136807 29 100.0 32 NNNNNNNNNN ............................. GAGGGTTACACATGAGGGCAATGTTTCAAGGA 1136868 29 100.0 32 NNNNNNNNNN ............................. TGTGATGTTTCAGGGACGCTCTCTTAATTTTT 1136929 29 100.0 32 NNNNNNNNNN ............................. CCCTTAAAGTCACCATACTGTAAGTCATACAT 1136990 29 100.0 32 NNNNNNNNNN ............................. TTTGAGCCGCTTATCGGTGATCCTGGTGATGG 1137051 29 100.0 32 NNNNNNNNNN ............................. GTTTCGTGCAGCGTTGCTTCGCTCGGATATCC 1137112 29 100.0 32 NNNNNNNNNN ............................. GGAGGCTCGCCTTGACCTTTCAGTTTTTCAAC 1137173 29 100.0 32 NNNNNNNNNN ............................. AGTGTGCGGTGGGTGAAGCGCCAGTGGCCGGA 1137234 29 100.0 32 NNNNNNNNNN ............................. TAACAGTAGTAGGTTCAACAGGAGGTGCAGTA 1137295 29 100.0 32 NNNNNNNNNN ............................. ATCGCCGCTCTTAATGCAGCACTGGAAGACGA 1137356 29 100.0 32 NNNNNNNNNN ............................. ACTCTTGAAAAAATCGCTACGTGGTTACAACA 1137417 29 100.0 32 NNNNNNNNNN ............................. TTGATACGTCTGGTGGGCCGGTGTCCTGGCTG 1137478 29 100.0 32 NNNNNNNNNN ............................. GCTCGATCATTATTCGCTAGACTACATGCTAA 1137539 29 100.0 32 NNNNNNNNNN ............................. ACGTTTAGCCAACGGTGGCTTGGTGGACGTGG 1137600 29 100.0 32 NNNNNNNNNN ............................. ATGCGGTTTGCCACCGGGTCTATAACGCCTAA 1137661 29 100.0 32 NNNNNNNNNN ............................. GCGACCAATACCGCCACGTAAATGTGGTTCCA 1137722 29 100.0 32 NNNNNNNNNN ............................. GCCGTTGCCAAACTCTTTAACGATTTTCACAG 1137783 29 100.0 32 NNNNNNNNNN ............................. GCGCGGCTGTTATGTCCACCGCCGGTTCTGCC 1137844 29 100.0 32 NNNNNNNNNN ............................. GTCATGAAGACGGTCGGCGATACGTCAGCCAG 1137905 29 100.0 32 NNNNNNNNNN ............................. GGGGAACGGATACCCGACATGCTACAAAATCG 1137966 29 100.0 32 NNNNNNNNNN ............................. CTCGGCCTGTACAGCTGCCTGCACGGATGCAG 1138027 29 100.0 32 NNNNNNNNNN ............................. TGGGCTATGGTTCATCCAGATGTTTCCTGGAT 1138088 29 100.0 32 NNNNNNNNNN ............................. CTCGAACACATGAAAATTCTTGAGGTGTGCAA 1138149 29 100.0 32 NNNNNNNNNN ............................. AAAGGATAAAGTCATGGGGCTTACTGGAGACG 1138210 29 100.0 32 NNNNNNNNNN ............................. ATGTACGGGTCGGTGCATCGCATGGAAGAAAT 1138271 29 100.0 32 NNNNNNNNNN ............................. ATGCTTCTTGCAGCTGCACATGCCAGAGAGCC 1138332 29 100.0 32 NNNNNNNNNN ............................. CATCCCCGTCTTCCGTGATTGCTGATCGAGTG 1138393 29 100.0 32 NNNNNNNNNN ............................. GCCGTACGTCCATTACCGACCATGCTCTGGAA 1138454 29 100.0 32 NNNNNNNNNN ............................. CCACCTTGCTCAATGCGGCCTCCGAGGTCGGA 1138515 29 100.0 32 NNNNNNNNNN ............................. TGCATATATCCCACATGACATGATCTTCAAAA 1138576 29 100.0 32 NNNNNNNNNN ............................. TTTTGGTTTTAGACACCGGTGGATCGGCTAGA 1138637 29 100.0 32 NNNNNNNNNN ............................. ATGCGCGAGGCGATCGAGGAGGCAGAGGCGGC 1138698 29 100.0 32 NNNNNNNNNN ............................. ATGCGCGAGGCGATCGAGGAGGCAGAGGCGGC 1138759 29 100.0 32 NNNNNNNNNN ............................. AAACAGGCCACAGCCAAGGGGGTGCGCCTATT 1138820 29 100.0 32 NNNNNNNNNN ............................. TTAACATAATAACTTGCCCGTCAACACATTGA 1138881 29 100.0 32 NNNNNNNNNN ............................. ACCGACTTCCTTGCGGGAAAACTCGGACGGAT 1138942 29 100.0 31 NNNNNNNNNN ............................. TTCGCTTTCCATCCTTGTCAACAACGCCATC 1139002 29 100.0 32 NNNNNNNNNN ............................. GTCCGCGTCATCTCCACCCACGACGGCGTGGC 1139063 29 100.0 32 NNNNNNNNNN ............................. TTTCAGGTCGAGTTGCGCAATCTTCCCTTCGC 1139124 29 100.0 32 NNNNNNNNNN ............................. ATGCCGCCTTTCTGGTTGAGGGCATAGCTGAC 1139185 29 100.0 32 NNNNNNNNNN ............................C CTCCATTCCTACCGTTAATCGTTCTCTTCGGC 1139246 29 100.0 32 NNNNNNNNNN ............................. GCGGACGCACCGTCGCGTTTGAACACAACCCC 1139307 29 100.0 32 NNNNNNNNNN ............................. CCTTCGCGCTACGGAATGATGCAACCAGGTGG 1139368 29 100.0 32 NNNNNNNNNN ............................. GGAGGTAATGTCGATGCCCTGCGAAAAGTCGC 1139429 29 100.0 32 NNNNNNNNNN ............................. TCGGGTCGGCTTGGGTGGACGAATCCTCCGAC 1139490 29 100.0 32 NNNNNNNNNN ............................A GCCCTTGACCTGATCAAACCCTATAAAAAAGA 1139551 29 100.0 32 NNNNNNNNNN ............................. GGTATTGAGACATGGTGACCCTTTGATTGGTA 1139612 29 100.0 32 NNNNNNNNNN ............................. ATGCTTCTTGCAGCTGCACATGCCAGAGAGCC 1139673 29 100.0 32 NNNNNNNNNN ............................. CCGCACCGTGGTGGGAACAGAATAGGCACGAA 1139734 29 100.0 32 NNNNNNNNNN ............................. GGGCAGTGGATGATGTTGACGAGTTGGCTGAA 1139795 29 100.0 32 NNNNNNNNNN ............................. TCACCAACATAGGGGGGTATCTTTTCCCAAGC 1139856 29 100.0 32 NNNNNNNNNN ............................. TCGCGCATGGCCGTAGCTTCCTTGGCGACGTA 1139917 29 100.0 32 NNNNNNNNNN ............................. CCGTGAGGCGGGTCGTGGAGGCCAAGGGCAAG 1139978 29 100.0 32 NNNNNNNNNN ............................. CGGCAGGCTGAGCAGTTGGGCATACCTGAGAG 1140039 29 100.0 32 NNNNNNNNNN ............................. GGTTTTGGGTTCAGCCTTATACCCAGTGCGAA 1140100 29 100.0 32 NNNNNNNNNN ............................. GAGGGATTACACGTGGACACTATATCTGTATC 1140161 29 100.0 32 NNNNNNNNNN ............................. GCGCGGTAAAGGATCTTCGCTTCTTCAACCGT 1140222 29 100.0 32 NNNNNNNNNN ............................. GGCCATTTGTCTTTCTCCTTTTTGTTTGAGTG 1140283 29 100.0 32 NNNNNNNNNN ............................. TTTCGTCAACATTTTAACCATGGAACACCTGA 1140344 29 100.0 32 NNNNNNNNNN ............................. GAAACGGCCAGCATCTTCCGGGTGGTGGCTCA 1140405 29 100.0 32 NNNNNNNNNN ............................. CCGCTTACCATCCACATGATGAACAATTATCT 1140466 29 100.0 32 NNNNNNNNNN ............................. GCATAACCCGCACCATTACGGATTACACCTTG 1140527 29 100.0 32 NNNNNNNNNN ............................. ATGTATCTGAGAGACACAGGTTTTCACAGGCT 1140588 29 100.0 32 NNNNNNNNNN ............................. GAGAGAGGAAACTATGCCCGACGAAACAACCA 1140649 29 100.0 32 NNNNNNNNNN ............................. TGTAGGGGATATTTCCGAATTGCTTATCAACA 1140710 29 100.0 32 NNNNNNNNNN ............................. GGTTCACGGCATTACACACGACGGCAATGAAA 1140771 29 100.0 32 NNNNNNNNNN .............G............... TTGTCTTGAATGGATTGCTAATCTGATAGGCG 1140832 29 100.0 32 NNNNNNNNNN ............................. GCCTTTGATGCGGCACCGTCGGTCTGGGCCAA 1140893 29 100.0 32 NNNNNNNNNN .............G............... GTACGGCGCACCTTTGTTCAGAAATACACCAA 1140954 29 100.0 32 NNNNNNNNNN .......T.....G............... GAGCCTGCAGAGTTTGTTTGTCACGGAGCTAG 1141015 29 100.0 32 NNNNNNNNNN .............G............... ATCGCGATTGAGTTTGATACGGATCGGCTTGG 1141076 29 100.0 32 NNNNNNNNNN .............GC.............. AATGGATCGATAACGTACCGGTCAACGACATT 1141137 29 100.0 32 NNNNNNNNNN ................T............ CTGGTCGGAGACGGACACCGGGCAGTCAAGAG 1141198 29 100.0 32 NNNNNNNNNN .............G.......G....... TGGTTGACCTGGTTGAGGTTAGCGTTGATACT 1141259 29 100.0 32 NNNNNNNNNN .T.G.........G.............G. CCGCCGGCCAAAAGGCGTTTGCCCTCATGTAT 1141320 29 100.0 1 NNNNNNNNNN .T.G.........G.............GA NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 112 29 32 GAGTTCCCCGCAGATGCGGGGATGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [3-21] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [71.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [74,795] Score: 0.18/0.18 # # Final direction: F [1.05,0.18 Confidence: HIGH] >NC_007503 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================== ====== 1926261 26 88.5 40 CCATACGTTT ........A.T......C........ AGGAGGATGATAATCATGTTATTAAGCGAATTGCTTGTTT 1926327 26 92.3 40 TTGCTTGTTT ........A.T............... CTGAAGCAATCCAGAAGTTGGCGGAGGACTTTGAAAGTTT 1926393 26 100.0 41 TTGAAAGTTT .......................... TTGGTTTTCCCATACTGGTCGGTCATGTCAGTTTGAGGTTT 1926460 26 100.0 41 TTTGAGGTTT .......................... CAAAATCACCTCCGGACCGCAAAGCAAGGTCGGTGAAGTTT 1926527 26 100.0 41 GGTGAAGTTT .......................... GTAAGAGTCTATTTAGAGCAGGAAAATGGGTATTTAGGTTT 1926594 26 100.0 40 ATTTAGGTTT .......................... GGAATTTAGGTATATCGCTTATTATATTTCTTTCTTGTTT 1926660 26 100.0 40 TTTCTTGTTT .......................... ATTGAAGGACTGGTTTTCTTCATTAAATTTAGAAGAGTTT 1926726 26 100.0 39 AGAAGAGTTT .......................... GCATTTGCCAATAAATCAGTAAAGTTAACACCTTGGTTT 1926791 26 100.0 40 ACCTTGGTTT .......................... CATATGGACTGCTTAAACAAGACTATCAGCATGCAAGTTT 1926857 26 100.0 40 ATGCAAGTTT .......................... GTGGTAGCTGTCGCCATAGTCCGCGTTTTTCCTGGCGTTT 1926923 26 100.0 41 CCTGGCGTTT .......................... TTTTTGAACTGACCAGCAGGAGAGTGGATTATTCAAGGTTT 1926990 26 100.0 40 TTCAAGGTTT .......................... AATTGATTAAACAACACGATTTATTGCCAGTTAAATGTTT 1927056 26 100.0 40 TTAAATGTTT .......................... CAAAATCTGCGTTTCAGGGCTGGAAATAATTTTCAGGTTT 1927122 26 100.0 40 TTTCAGGTTT .......................... AAAGTCGGTGGACCACGGCCGTATAAACGTGGGAGGGTTT 1927188 26 100.0 40 GGGAGGGTTT .......................... ATTCCACCCGGAGGTGCTGAGAGTTGATATTCTTGAGTTT 1927254 26 100.0 41 TCTTGAGTTT .......................... AGAGCTGGCGAAAACAAGACCGAATTGATTGGCAGAAGTTT 1927321 26 100.0 40 GCAGAAGTTT .......................... CCTACCGTATTTATCTCGTTCTTGGACGTCTTTCTGGTTT 1927387 26 100.0 40 TTTCTGGTTT .......................... CATGCCGGCAGGATACAGCTCCCGATGCCGGGTGTGGTTT 1927453 26 100.0 39 GGTGTGGTTT .......................... AAAGTTGGGTATGTATTGGACGGTATTCGGCCGTAGTTT 1927518 26 100.0 42 GCCGTAGTTT .......................... ATAAAGACTTTCACAAACCGACAAGGTGAAATTATAGTGTTT 1927586 26 100.0 43 TATAGTGTTT .......................... TTCGCCAGCGGCTTTCTTGGTTTTCTTTTCTTTTACCTCGTTT 1927655 26 96.2 40 TACCTCGTTT ....T..................... CTGATATGTTTAAGCAGTTTTTAGGGAAGGTTTGGCGTTT 1927721 26 100.0 40 TTTGGCGTTT .......................... CAGAATATAGTAAATGAATTAGAAGCTAATAAGCAAGTTT 1927787 26 100.0 39 AAGCAAGTTT .......................... TTCTACATTATAACCATAATCCTCAAATAATTTTTGTTT 1927852 26 100.0 39 ATTTTTGTTT .......................... CAGGTTGTGGTCTAAATCCATGTCTGCGACTATATGTTT 1927917 26 100.0 40 CTATATGTTT .......................... ATGGGAGTTTGAGGTAAGCAGGCAGGCGGTAAGGATGTTT 1927983 26 100.0 39 AAGGATGTTT .......................... TTAGGTGGCTTTAATCCTTCGGCCTGCCATAGTTTGTTT 1928048 26 100.0 42 TAGTTTGTTT .......................... CCAAGTACAATCAGCGGCTTTTTGAACACCTCGCCTTTGTTT 1928116 26 100.0 41 GCCTTTGTTT .......................... TACGGTAGACTGTAAAGTTTCCAATTGAAATATCATTGTTT 1928183 26 100.0 39 ATCATTGTTT .......................... TCTGGTGATGATATGATTTGTCTTTTTGTTACTGAGTTT 1928248 26 100.0 40 TACTGAGTTT .......................... CTTAATGCTAACTGCACCTTGTTAACCCCCTTTTAGGTTT 1928314 26 100.0 41 TTTTAGGTTT .......................... CTCGCCCCAATCGTGCAAGGTCAATTGGTAAACGTTCGTTT 1928381 26 100.0 40 ACGTTCGTTT .......................... TTTTGTGGAAATGTTGCAAACAGTGAAGGGTGTCAAGTTT 1928447 26 100.0 41 TGTCAAGTTT .......................... TCCAATCGTAATCTTTCATATATTCACTTCTTGGAGTGTTT 1928514 26 96.2 42 TGGAGTGTTT ........A................. CCAGTTTAGCATAATATTATTATCTTCTACTGTTCCGCGTTT 1928582 26 100.0 40 TTCCGCGTTT .......................... AAGAAGAAGCCAGGGAGTACTGGGCAAAGTTTATGCGTTT 1928648 26 100.0 40 TTATGCGTTT .......................... TTCTTTCTGGTGCTGGGTATCTCATTGCACTTTTGGGTTT 1928714 26 100.0 41 TTTTGGGTTT .......................... AGTAAAATAGCTATTTGTACATACAATAGCCCCATTGGTTT 1928781 26 100.0 40 CCATTGGTTT .......................... TACATGTTTGCTTCTTCATCTTCGACCATCTTAATGGTTT 1928847 26 100.0 41 TTAATGGTTT .......................... GAATCATTCAAAAGTAAACAACTTGCAGAAATTGCTTGTTT 1928914 26 100.0 40 TTGCTTGTTT .......................... GGTTTATGTAAGTATTAATAATTTGCTGGTAACGTAGTTT 1928980 26 100.0 40 AACGTAGTTT .......................... TGCCATTTTTTATAAAGAATTTTATTCATCTCTTTTGTTT 1929046 26 100.0 42 TCTTTTGTTT .......................... AGGCAGGTAATGGGTAATGCAGCTTGAGGAAAAAGTATGTTT 1929114 26 100.0 39 AAGTATGTTT .......................... TGAGAAAATTTCTTACGATGAAATAGCAAGAAATAGTTT 1929179 26 100.0 42 GAAATAGTTT .......................... GAAAACCGCATGACGCAAAAAGAACTGGCCATGCGTCTGTTT 1929247 26 100.0 39 GCGTCTGTTT .......................... AACACTTTTGAGATTACTACTTCTGTATATTGGAAAATG 1929312 26 100.0 40 TTGGAAAATG .......................... AACTTGGCTTGAATAGCGTTACTAAAACAGTTTTCAGGCG 1929378 26 100.0 40 TTTTCAGGCG .......................... AACGGGTTCAAGGGAAGTATTAAGCCATTTGAAAATAAGG 1929444 26 100.0 40 GAAAATAAGG .......................... AACTTAGATGAAAAAAACAAGTAGTGAAAAGTGAGTGAAG 1929510 26 100.0 39 GTGAGTGAAG .......................... AACCATACTGGCCGAATTGTAGAGGTAATTAAAAAAATG 1929575 26 100.0 40 TAAAAAAATG .......................... AACGGGTTCAAGGGAAGTATTAAGCCATTTGAAAATAAGG 1929641 26 100.0 42 GAAAATAAGG .......................... AACACCTCACAAAAACCATCCGGTTTGTTTACTTCCGAAGCG 1929709 26 100.0 40 TTCCGAAGCG .......................... AACGATAATCGGGTTAAACAAGCTGTCTATAATTCTCTGG 1929775 26 100.0 41 AATTCTCTGG .......................... AACTTAACGGGACTAACAAATACACGGGGACAGCTTACATG 1929842 26 100.0 41 AGCTTACATG .......................... AACGTTGTGTATTCTGTCGCTCCTACACCAATTCTTACTTG 1929909 26 100.0 40 TTCTTACTTG .......................... AACGTATATGTCCATCGTGATTTGAACGCTTGAATGACCG 1929975 26 100.0 40 TGAATGACCG .......................... AACGTGCCAGCAGCGCCAGCATCACCAGTGGCCACATCAG 1930041 26 100.0 43 GCCACATCAG .......................... AACTGGGACTGCTTTTTTATGTATTGCGTGAGAACGCAGATTG 1930110 26 100.0 ACGCAGATTG .......................... AACCCATAAT ========== ====== ====== ====== ========== ========================== 59 26 40 CAATCCCAGAATGGTTCGATTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.54%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.30,-0.90] Score: 0/0.37 # Array degeneracy analysis suggestion: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [61.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [214,329] Score: 0/0.18 # # Final direction: R [0,0.68 Confidence: HIGH] >NC_007503 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1944006 30 100.0 36 NNNNNNNNNN .............................. AAGCTTTTATAGCCATACTAAACACCGCCTACAGAA 1944072 30 100.0 38 NNNNNNNNNN .............................. GCAGCCGCATCAAAAGACTTGCTCGCGGGAATGTAGAA 1944140 30 100.0 38 NNNNNNNNNN .............................. AGTCCTCGGTATACTTCAAAGATAAGCTTTTTGCCATT 1944208 30 100.0 38 NNNNNNNNNN .............................. AGCCGAGGACTTTGCAGAGTACTTCAGTTCTTTCATTA 1944276 30 100.0 36 NNNNNNNNNN .............................. CTCCCCGGAGAAAATTTCGCCGCTATTCCCATGGCC 1944342 30 100.0 33 NNNNNNNNNN .............................. AAAAGCCATCCTTCGGGTTCTTCTGTATTTCAC 1944405 30 100.0 37 NNNNNNNNNN .............................. AATTTAAAAGCTATGCTTAACTTTTTTGACGATTTTG 1944472 30 100.0 35 NNNNNNNNNN .............................. TAAGCTGTAAGTACCCAAACAAAAAACATCATTAT 1944537 30 100.0 37 NNNNNNNNNN .............................. AATTTAAAAGCTATGCTTAACTTTTTTGACGATTTTG 1944604 30 100.0 35 NNNNNNNNNN .............................. TAAGCTGTAAGTACCCAAACAAAAAACATCATTAT 1944669 30 100.0 37 NNNNNNNNNN .............................. CCACAGCTAAAAATGGTTTATGTAAGCAAATATAATC 1944736 30 100.0 39 NNNNNNNNNN .............................. CCAGTTCCGTCGGTGGAGGCCATTTCTGGCCAATTGCGA 1944805 30 100.0 36 NNNNNNNNNN .............................. GGGGGTATATATATAATGACTTTAAAAGAATTAATT 1944871 30 100.0 36 NNNNNNNNNN .............................. TTGCTAAGATAGTCTTTTCCCGGTTAATCAATCCTG 1944937 30 100.0 39 NNNNNNNNNN ............C.GATTGGTTCGATT..A ACTTTTCTCCGCTTGTACCACTCTTGCACCACGTGAAAA 1945006 30 100.0 37 NNNNNNNNNN .............................. CAGTGTGAAGGAAGCAGCCAAGATGCTTTCACTGGGA 1945073 30 100.0 37 NNNNNNNNNN .............................. TGGGGTGTTCTACTTCCTGCGTTGTTGGAGTAGGCCA 1945140 30 100.0 38 NNNNNNNNNN .............................. ATAATGCCCACCTCGATCGTACCGCTGGAGGAGATACT 1945208 30 100.0 35 NNNNNNNNNN .............................. CCACCGCCAGTCCGGAGCTCCATCTGCTTCGTCTA 1945273 30 100.0 38 NNNNNNNNNN .............................. AAGGGAGCAAAAGGGACGCAAAAAGAGAAGTTTTAGGG 1945341 30 100.0 39 NNNNNNNNNN .............................. CCAGTTCCGTCGGTGGAGGCCATTTCTGGCCAATTGCGA 1945410 30 100.0 37 NNNNNNNNNN .............................. CGGGTTAAGTATGGTAGAGCCACGTTGGGGCATCGCT 1945477 30 100.0 36 NNNNNNNNNN .............................. CGGAGAATATCACCGTGAAGGGGATAAACCTGCATA 1945543 30 100.0 36 NNNNNNNNNN .............................. TCCGGTCCTTTGATATGCTTCATTAATTCTTTTACA 1945609 30 100.0 36 NNNNNNNNNN .............................. TGATGTGTAACTTGCCCATTCAAAGGTATTCTCTGG 1945675 30 100.0 35 NNNNNNNNNN .............................. AAGAAAATGAACTGTGGTTGGAAAGCGATGATGCT 1945740 30 100.0 36 NNNNNNNNNN .............................. TCCGGTCCTTTGATATGCTTCATTAATTCTTTTACA 1945806 30 100.0 36 NNNNNNNNNN .............................. TGATGTGTAACTTGCCCATTCAAAGGTATTCTCTGG 1945872 30 100.0 35 NNNNNNNNNN .............................. AAGAAAATGAACTGTGGTTGGAAAGCGATGATGCT 1945937 30 100.0 38 NNNNNNNNNN .............................. CTTTACCACTTCCAGGCATTTTCGGCCTGTCCTGCTAA 1946005 30 100.0 37 NNNNNNNNNN .............................. CTGCCGCTACCTCGGCAAAAAAAGCCGAGGAGGACTT 1946072 30 100.0 39 NNNNNNNNNN .............................. TCTCAATTAGAAACTGGTACAAGAGGTTTCCCATCTAAA 1946141 30 100.0 37 NNNNNNNNNN .............................. ATCGTTCTTGCCAGAAGTACACTTTGACCGATGCATA 1946208 30 100.0 37 NNNNNNNNNN .............................. CTTGTCAAGGCTCGGCCGTAAGGCCGACAGTAGCCGT 1946275 30 100.0 39 NNNNNNNNNN .............................. TCTTGCCATCATGTAGCTTCAGACCGTCAACCCATTCCC 1946344 30 100.0 37 NNNNNNNNNN .............................. TTGGAGGCAGAAAAGAGATTAGAAGAAGCTTCTGAAA 1946411 30 100.0 37 NNNNNNNNNN .............................. AGGCATTTCGACAAAAGTTTTGTCAAGGTTTTTAAGA 1946478 30 100.0 34 NNNNNNNNNN .............................. CCGCCTAATTCCCCATCACCAACTGCTATTCTCG 1946542 30 100.0 35 NNNNNNNNNN .............................. CCGGTTGGAGCTTTCCTGCTGGAAGAATTTCCTGT 1946607 30 100.0 37 NNNNNNNNNN .............................. GAGGCACTTGAGAAGTGGTTAAAGCGATATGAGACGC 1946674 30 100.0 36 NNNNNNNNNN .............................. CTTATAATAAAATTAAACGGCTTCGTAAATATTGAA 1946740 30 100.0 37 NNNNNNNNNN .............................. TGGCCAGTGGGCATTTAGAAAAGCGCAGTGGAAACGA 1946807 30 100.0 36 NNNNNNNNNN .............................. TAGAATCCGCTCTCGATGTTTTTCTCTTCGTCTACC 1946873 30 100.0 36 NNNNNNNNNN .............................. TGGATATAAAGGTAATCTCAGAAAGATTGGGCCACT 1946939 30 100.0 37 NNNNNNNNNN .............................. GTGTAATAAGTGATAGTGCTACTGTTGCAGAAGGAGT 1947006 30 100.0 37 NNNNNNNNNN .............................. AAAAAGACATGTTTTATGTTCCCGGTAGGCTCCTTCA 1947073 30 100.0 36 NNNNNNNNNN .............................. TTCCTCCCAAGAGGTACTTTCAAAGCTTGTCCAGGA 1947139 30 100.0 34 NNNNNNNNNN .............................. ATGGAGTTGTTTCAGCTTGCGGAACGGGAGGGGA 1947203 30 100.0 37 NNNNNNNNNN .............................. GGCTTGCGGTATTGGCTTCGCAGCAGAGCCCGAGCAA 1947270 30 100.0 37 NNNNNNNNNN .............................. CCTCAACATCTTCAAATGCAACCGCATAACCTTTAAT 1947337 30 100.0 37 NNNNNNNNNN .............................. AACCGAAAAAGCAACAACTTCTTTCTTCTTGACCATA 1947404 30 100.0 37 NNNNNNNNNN .............................. TTTCGGCTGTTGCAGTATTTTTAACAATAGCTGGGTT 1947471 30 100.0 38 NNNNNNNNNN .............................. CGGGGTGTTCTTTTATTGCGGCGATATAGTGTTCGCCG 1947539 30 100.0 36 NNNNNNNNNN .............................. TAGAGATAGATGTGAGGGTGAAAATTGCGAGAATTT 1947605 30 100.0 37 NNNNNNNNNN .............................. TGGTGGTGCGCTTTTATCACCACGTCGCCCTCTTCGA 1947672 30 100.0 37 NNNNNNNNNN .............................. TATCCTGCCATTTTCATCTTTTGACGCGCAAGCTCCA 1947739 30 100.0 38 NNNNNNNNNN .............................. CGGGACAAAATAGCCTGTCTTTACTGACAAGCTATTTA 1947807 30 100.0 37 NNNNNNNNNN .............................. TTTTGTTGCTGCTTTTGCTGGAAATCCTGCTGAATGT 1947874 30 100.0 36 NNNNNNNNNN .............................. AAAGAATTGCTTTACTATTCTGCACTCCTCCGGCGT 1947940 30 100.0 37 NNNNNNNNNN .............................. AATTGTCGAAGACCCAGAAGCCAGAGAGCTTGCCCGA 1948007 30 100.0 35 NNNNNNNNNN .............................. AAAAGACAGATATCAGCGAGATTTTGCGAGGTGGG 1948072 30 100.0 37 NNNNNNNNNN .............................. AGGTGTAAAGGTAATAGGTAAAAAGAAAGATGCTATT 1948139 30 100.0 39 NNNNNNNNNN .............................. CTTGAGAACAAAAAGCGTCGTTCGAAAAAGAACGACACG 1948208 30 100.0 36 NNNNNNNNNN .............................. CTGGTTCTCCGTATGCGTTGTAGCCGGTAGTGGTTT 1948274 30 100.0 38 NNNNNNNNNN .............................. GTGAAAAATATTATTCCATTCCAAGGCATATTTTCGAT 1948342 30 100.0 35 NNNNNNNNNN .............................. CCGGTCAGTATTACATCAGCCGACACATTCCACCG 1948407 30 100.0 38 NNNNNNNNNN .............................. TAACCTTATGGCCTTACAGGTAGGCGTAGATAGTTATG 1948475 30 100.0 36 NNNNNNNNNN .............................. TAAATTGCTATATTTATTATATGACGATGTTAAAGA 1948541 30 100.0 36 NNNNNNNNNN .............................. TGAAAGCTTTTGCGAGAGATATATGGGATACAATGG 1948607 30 100.0 37 NNNNNNNNNN .............................. AGCATAAATAAAACAATAACCCGCTAAGTAAGCGGGT 1948674 30 100.0 38 NNNNNNNNNN .............................. AGGCAAAATTTCCATACTTCCCACCTGCTTTCTCTTTG 1948742 30 100.0 38 NNNNNNNNNN .............................. CCAACCGTCTTATTATTTATCCCTGCCTTAAAGTTTTA 1948810 30 100.0 36 NNNNNNNNNN .............................. TCGCCATGTTAGAGCCAGCCACGATGTTGAATGCGG 1948876 30 100.0 36 NNNNNNNNNN .............................. TACCCCTACTGATATACCTTCTGGATTGTCCGATGC 1948942 30 100.0 38 NNNNNNNNNN .............................. AATAACCGAGAAAAAAGCATTGGATATGAGCGAGTCAT 1949010 30 100.0 35 NNNNNNNNNN .............................. TTACCGAAGAAGAATATTTGGAAATTGTTGCTATA 1949075 30 100.0 37 NNNNNNNNNN .............................. TTTGAAGTAGTTAATGAAGTAAATCGTTTAGGTATTT 1949142 30 100.0 36 NNNNNNNNNN .............................. ATATAATCAAATTTTTAGAAATTGAATTTCCATCTT 1949208 30 100.0 37 NNNNNNNNNN .............................. AGGACTGTCAAAAAAATGTAGATATATGTTCTATATG 1949275 30 100.0 39 NNNNNNNNNN .............................. GAGGGCTCAATAATAAGGGAAGTGAGCCCTGAAATCGCT 1949344 30 100.0 37 NNNNNNNNNN .............................. TTTTTGGAAGGAGGCGCAGAAATGGAACAGGAAATTA 1949411 30 100.0 36 NNNNNNNNNN .............................. AGCGGCGTGTCTCAATCGTATCGTCACCGTATGGCA 1949477 30 100.0 36 NNNNNNNNNN .............................. GCTTTCCCAGACTGCGCTTTCAGCAATATTTGCCAT 1949543 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 84 30 36 GTTTCAATCCCAGATTGGTTCGATTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.80,-0.90] Score: 0/0.37 # Array degeneracy analysis suggestion: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [58.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [134,382] Score: 0.18/0.18 # # Final direction: R [0,5.36 Confidence: HIGH] >NC_007512 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1473196 32 100.0 33 NNNNNNNNNN ................................ TTTGATGAATGGAACCTATCGGACGAGCGAGTA 1473261 32 100.0 33 NNNNNNNNNN ................................ AGCGTAGGGTATAGGTACGGTATCGATAGGGTA 1473326 32 100.0 34 NNNNNNNNNN ................................ TGATAGTGTGGTATGGCCAGCCATTATAGGCCGC 1473392 32 100.0 35 NNNNNNNNNN ................................ CGGACGGGGATCACATTATTGCCCGCCGTAACGAG 1473459 32 100.0 33 NNNNNNNNNN ................................ CTTGTGAAGAAAATGGCGCAATTAAAGGTGTTG 1473524 32 100.0 33 NNNNNNNNNN ................................ AATGATGGTGGTACGATTTACAACCTCGTTGTG 1473589 32 100.0 35 NNNNNNNNNN ................................ AATCGGATTGCAGACCGTATCTATGAGATGCTTGA 1473656 32 100.0 35 NNNNNNNNNN ................................ TCATGCCCGCCGTTGAAGTTCAGCAAGGGATCGAG 1473723 32 100.0 33 NNNNNNNNNN ................................ ACCAAAATCACAGTCGTTTTCGTAACCGCAACG 1473788 32 100.0 34 NNNNNNNNNN ................................ GGGTAGTTATGGCGGAGCATCTGGAGCGTGGGGT 1473854 32 100.0 33 NNNNNNNNNN ................................ GCCGAGCTGATGGTTGGCCTCTGGGGTGGCATC 1473919 32 100.0 33 NNNNNNNNNN ................................ AAAACTTGGTGCAACAAAAGTCACGCTGTCTGA 1473984 32 100.0 33 NNNNNNNNNN ................................ AAGTCCGCTCGGAGTATCGTGGACCTGGTCCCA 1474049 32 100.0 34 NNNNNNNNNN ................................ TTTGTATACATGGGGGCTTGCCTTTGGTGGGCCG 1474115 32 100.0 34 NNNNNNNNNN ................................ CTATAACCTCATTACATGGTTGGAGCACCGCTAT 1474181 32 100.0 33 NNNNNNNNNN ................................ GAAGCGAATACGACAAATCATACTCTCCGCCGG 1474246 32 100.0 33 NNNNNNNNNN ................................ TTTTTCGAGGGTGCCGGGGACGGAAGGGGACTC 1474311 32 100.0 33 NNNNNNNNNN ................................ TACCCTGTGGTTGAGCTTGATGGCGCAGGCGCT 1474376 32 100.0 33 NNNNNNNNNN ................................ TGAATATCCGGCGCCATCTTACGGAACGCATCG 1474441 32 100.0 33 NNNNNNNNNN ................................ TTGAACGCGTCGCTTTCGTCGGCGACAATCATT 1474506 32 100.0 34 NNNNNNNNNN ................................ TCTTCCGGACCGAGCTCCTCGATGTATGGGTTCG 1474572 32 100.0 35 NNNNNNNNNN ................................ AGTTATCCTTTTGAGGTTAAAGTTCGTACGCGAGT 1474639 32 100.0 33 NNNNNNNNNN ................................ CGAGGCAAGTACGCAGGGTTCGTCAGGTTCAAG 1474704 32 100.0 34 NNNNNNNNNN ................................ AATATCGGCCTGCATATCCAACAGCGCGTTTATC 1474770 32 100.0 33 NNNNNNNNNN ................................ TCGTCAAACGCTATCCTCATAAAAGGGCGTGAT 1474835 32 100.0 33 NNNNNNNNNN ................................ ATCCGGGAGGTGCAGGAGGCGACCGGCATCCCG 1474900 32 100.0 34 NNNNNNNNNN ................................ AGCGACGACATCAGCCGACAGATACGGCTCGATG 1474966 32 100.0 33 NNNNNNNNNN ................................ ATGTACCGGACAGCCCGCAAAAATGCAATCTCC 1475031 32 100.0 34 NNNNNNNNNN ................................ TAAAAAACCTTGAGGAGGTAGGGTTATGAAAGTG 1475097 32 100.0 36 NNNNNNNNNN ................................ AACCAGGAGCGATGGCTCGATGATGTAGATGATGCA 1475165 32 100.0 36 NNNNNNNNNN ................................ AAACTCATTTGTTGTTGTTTCCCGGTTCCGCTGGGT 1475233 32 100.0 35 NNNNNNNNNN ................................ CACTATAAAATCAGAAGAAAGAGAAGGCAAGGAAG 1475300 32 100.0 35 NNNNNNNNNN ................................ TATTCGACGATTATCACCATAATAAGATGAAGCAA 1475367 32 100.0 35 NNNNNNNNNN ................................ GCCTCAAGACGGGCAGCAGTGTTATCGAGAGCCCG 1475434 32 100.0 35 NNNNNNNNNN ................................ AGGTAAGTTCCTGCCGACCGAGGAGAAGATTGCTC 1475501 32 100.0 35 NNNNNNNNNN ................................ TACTTCGGCTCTCGCGGGCTTGAGAAGATTGGGCA 1475568 32 100.0 35 NNNNNNNNNN ................................ TTCGGGATACAGCGCGTCAACTGATACCCGTGCCC 1475635 32 100.0 35 NNNNNNNNNN ..............A................. ATGAGTCTCCCTGCTACTCTTCGCAAGCGGTTCGA 1475702 32 100.0 33 NNNNNNNNNN ................................ GCCTATCTGGGACGACGGGTCCCAGCTTTTCGG 1475767 32 100.0 1 NNNNNNNNNN ..........................CTGGGA NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 40 32 33 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-10.30,-11.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [182,1020] Score: 0.18/0.18 # # Final direction: F [5.55,0.55 Confidence: HIGH] >NC_007514 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1339649 32 100.0 34 TACAACAGCA ................................ CCAAAATTCTTTAAATGTTCTTAAGGGTGATTCT 1339715 32 100.0 39 GGGTGATTCT ................................ ATAACAACTAACAACAACAACGGAGGCGACAATGGAAAA 1339786 32 100.0 32 CAATGGAAAA ................................ ATGATCCAAAAGATACCAACTGCCCGCAATTG 1339850 32 100.0 33 CCCGCAATTG ................................ CAAGGGTGCCGCCTACCACTACCCAAAAACGGA 1339915 32 100.0 33 CAAAAACGGA ................................ TTATTGTTAATAAAACACTCTGCCTTTAGTAAC 1339980 32 100.0 38 CTTTAGTAAC ................................ CTACGCTTAAAAGATAAATTAGTAGCAATACCCCTAAA 1340050 32 100.0 36 TACCCCTAAA ................................ CAAACGGAGAAAACAATGACTTACTTCACAGGCATT 1340118 32 100.0 32 CACAGGCATT ................................ AAAGAGGTAGGCGCAAAATTCGCCTCAAAAAA 1340182 32 100.0 33 CCTCAAAAAA ................................ TTTCCATGCTTACCTTTATGTGTCTGTACCGAT 1340247 32 100.0 35 CTGTACCGAT ................................ TTAGTAGTATGCGTTATGCCTACGAGTTAGGGCTT 1340314 32 100.0 34 GTTAGGGCTT ................................ AGCGCAAAAACTCCGCCTTTTTTACGTCGAACGA 1340380 32 100.0 36 CGTCGAACGA ................................ GTGTTTCGTAATTATCAGCAACCATCTTATCCTGCC 1340448 32 100.0 34 TTATCCTGCC ................................ TCATTGACATTGAAGAGGAGGGTAAACAATGAGA 1340514 32 100.0 33 AACAATGAGA ................................ TAAAGTTAAAGTAAAGCGTGAGATTGAAGGCAT 1340579 32 100.0 32 TTGAAGGCAT ................................ CTAAAGTCAACGATAGAAGAAACAAAAATACT 1340643 32 100.0 36 CAAAAATACT ................................ CAAGAAGCAATTGGTAAGTTATACGGCATTTACCGT 1340711 32 100.0 33 CATTTACCGT ................................ ATCGGCTAATGCTTTTTGCGTGCTACTCGCCCC 1340776 32 93.8 34 TACTCGCCCC .....................GG......... TCAGAAATACTAAGGAGAAACCATGAACTACAAA 1340842 32 93.8 33 GAACTACAAA .....................GG......... GCAGTTCAAACACAACAAACAACAATAAACGGA 1340907 32 100.0 34 AATAAACGGA ................................ TGTTATCAGGTCGCTTTTTGAAAATGAGGCAGCA 1340973 32 100.0 33 TGAGGCAGCA ................................ TTTGATGCAGTAGAATGGTTTGGCTTTTGGGTA 1341038 32 100.0 34 CTTTTGGGTA ................................ TCGTTAATCTGTTTAAGTTTTCGTTTTCGTAGCC 1341104 32 100.0 34 TTTCGTAGCC ................................ ACGGGCACACGGGCAAAGATGTTAAGCAAGATAT 1341170 32 100.0 32 AGCAAGATAT ................................ TTATGGGCAACAGTGAAGAGGACGACGACAAA 1341234 32 100.0 34 CGACGACAAA ................................ TCGCCTTTTATCTCTATTCCGCTATCAGTAAAGC 1341300 32 100.0 38 TCAGTAAAGC ................................ GTGGCATAGAAGAGGAGTCCAGTAATGGAGGAATGTTT 1341370 32 100.0 34 AGGAATGTTT ................................ CATCAATTCCCATCATCTTTGCGAGATTGTAGGC 1341436 32 100.0 33 GATTGTAGGC ................................ TGTTGACGCTTATCCTGATTTTACAGAGCTGCC 1341501 32 100.0 34 CAGAGCTGCC ................................ ATAAGAATCAAGAGTGTGAGATTTCCGTTTATCA 1341567 32 100.0 34 CCGTTTATCA ................................ CAATATGGCAAAAGTTAGGGCTTGGTTGTGATAT 1341633 32 100.0 36 GTTGTGATAT ................................ CGCACATTCGCACCAATGTTTTTAGCAAGTAGCCCT 1341701 32 100.0 33 AAGTAGCCCT ................................ GCAGGTCTTTTAAAATAAGGGAACTTTCTTAAC 1341766 32 100.0 33 CTTTCTTAAC ................................ ACTGTTTGATAAAGTTTAGAACCTTATGTAAGG 1341831 32 100.0 35 TTATGTAAGG ................................ TAGGGCTTACAAGTCCTTTACTGCTGATAAGGCTG 1341898 32 100.0 33 GATAAGGCTG ................................ CTAGCACTATCAAATATACCACCTGCTCCTCCC 1341963 32 100.0 37 TGCTCCTCCC ................................ CATCACCGCTCCCGCCACCAAAGCCGCAAAGCAGTGG 1342032 32 100.0 36 AAAGCAGTGG ................................ TTTGAGCCGATATGCCTTGCTCGCAAGCCGTTAAGC 1342100 32 100.0 35 GCCGTTAAGC ................................ TTTAACCGGCAGCCATTGCGTTTTATCGGGAGATG 1342167 32 100.0 35 TCGGGAGATG ................................ TTGGCTTTTCCTTGCAGCATCAGTATTACCTGTAA 1342234 32 100.0 33 TTACCTGTAA ................................ GGAGCTGCTCGAAAAGGATTTGGAGCGCTTTGA 1342299 32 100.0 34 AGCGCTTTGA ................................ CCAATCGTTCCGCGACCTTTTCGCGGCTTTTCGC 1342365 32 100.0 33 GGCTTTTCGC ................................ CGGCTTGAAGGTTTATGACATGACGCTTGTAGG 1342430 32 100.0 33 CGCTTGTAGG ................................ GTGCTGTTAGGTAGGTGCGCCCATTCTCCTCAA 1342495 32 100.0 34 TTCTCCTCAA ................................ GGCACACACGTCAGAAATTTACAAGGGGATTCTT 1342561 32 100.0 33 GGGGATTCTT ................................ GTTCCATTACTGTTTATTAAGCGCATTCACCGC 1342626 32 100.0 34 CATTCACCGC ................................ CGTAAGCGCCCGCGACTTTGGTTACACTGTGCTT 1342692 32 100.0 36 CACTGTGCTT ................................ CAACGTGGGAACCGCTTGCCGCAAGCACCGTAGCTA 1342760 32 100.0 33 ACCGTAGCTA ................................ TATAAGACGGGTGCTCTAACCAACTGAGCTAAC 1342825 32 100.0 36 CTGAGCTAAC ................................ CGCGGGTTATCGGATTGTGATGATAGTGCAATAGCT 1342893 32 100.0 34 TGCAATAGCT ................................ CATTCTTCTCAATCTCGCGCTCACGCATTGTCTT 1342959 32 100.0 35 GCATTGTCTT ................................ CGGAGTGTATCAAGCGTTAACCGATAAGCTCTTAA 1343026 32 100.0 36 AAGCTCTTAA ................................ CAAATTCATTCTTGTGCAGCACGAAGCAACCTACAA 1343094 32 100.0 34 CAACCTACAA ................................ AGCACCCCCACGTTTTTACGGCTTGCCACTAAGC 1343160 32 100.0 33 GCCACTAAGC ................................ TGCGTACCTTGTTGCGTACCTTTTAAGGTTATA 1343225 32 100.0 34 TAAGGTTATA ................................ AGGTAAAGCAGATGAAGAGTTTGATGCAAAAATT 1343291 32 100.0 33 TGCAAAAATT ................................ ACAGCGCCGATGATTGGCTTTGGCACCTTACGT 1343356 32 100.0 33 CACCTTACGT ................................ GCGGCTTTTTCGTAATCGTCAACATCTTCGGGT 1343421 32 100.0 37 ATCTTCGGGT ................................ TTGCTGAACGGGCTTTTTTTTTAAACCTTCAGCCGCC 1343490 32 100.0 38 TTCAGCCGCC ................................ CTCAAACACTTCAATCGCAGCGCGATCAGCATAACCGA 1343560 32 100.0 34 GCATAACCGA ................................ TCCATTCCATCCGTAAAGAGGTTACCGATGCGGG 1343626 32 100.0 36 CCGATGCGGG ................................ TCTGGCAGCACCATTGCACAAGCAGCTTTGTTATTG 1343694 32 100.0 35 TTTGTTATTG ................................ TGACTATGAGGGGTAAATGCGGCTTTAGCATAGCG 1343761 32 100.0 TAGCATAGCG ................................ TGTAGTAAAA ========== ====== ====== ====== ========== ================================ 63 32 34 GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [6,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.10,-6.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [231,179] Score: 0/0.18 # # Final direction: R [0.74,4.5 Confidence: HIGH] >NC_007514 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2511697 30 100.0 36 GAAATACTCT .............................. TAAAGATTGTGAGATTGAATGTGTATGCAGTGAATG 2511763 30 100.0 35 GCAGTGAATG .............................. CCTTGCTGTAGGAAACATCGGGAATACCCTTCTTT 2511828 30 100.0 35 ACCCTTCTTT .............................. CAACAAAGGGTGTTGCTGCGTAGGTTGTTGGTGAT 2511893 30 100.0 37 TGTTGGTGAT .............................. ATAAAGACTAACTTCAGTAAGAGTAATCAGGTTTTAA 2511960 30 100.0 36 CAGGTTTTAA .............................. TTGGGCTTGGTGGTTCAACGTCGCCTCGCACACTTG 2512026 30 100.0 36 CGCACACTTG .............................. GTATCCGACAGGACAGATTTACAAAAGCACTGATAG 2512092 30 100.0 36 GCACTGATAG .............................. GTGTGGTTGCTTGCTTGTGCATAGCTAATAGGTGTG 2512158 30 100.0 35 AATAGGTGTG .............................. GCTGACTGTGTACTGCACACGATTGCGGCGAAATA 2512223 30 100.0 36 CGGCGAAATA .............................. AAATAATAAAGCTTCGTTGCCTTGAACGTATATCAT 2512289 30 100.0 35 CGTATATCAT .............................. AAAGCGGGGTGTGCTGCCTTGACTGATCGGCGGGA 2512354 30 100.0 38 ATCGGCGGGA .............................. AGCCAGCTCTTGAATTGCAAATATTTTTGTTTCACTTA 2512422 30 100.0 40 GTTTCACTTA .............................. CAGAACTAATTAAGCATCGTTGCCTTGAACGGCTATCTTT 2512492 30 100.0 38 GGCTATCTTT .............................. TGCCTCGCTCGGTTTGTCGCGCCCTGCCTCCGCTATAC 2512560 30 100.0 35 TCCGCTATAC .............................. TCAAACCTCGCAAGGGTATTATCCGTAGTTGTCGT 2512625 30 100.0 37 TAGTTGTCGT .............................. TTACGAACAGACACAACGCAAAACAAAGATGATATTG 2512692 30 100.0 39 GATGATATTG .............................. TAAACCGTTTACGCTGTAAACAGCACAGCTTTTTCCATC 2512761 30 100.0 35 TTTTTCCATC .............................. TCAAACCTCGCAAGGGTATTATCCGTAGTTGTCGT 2512826 30 100.0 37 TAGTTGTCGT .............................. TTACGAACAGACACAACGCAAAACAAAGATGATATTG 2512893 30 100.0 35 GATGATATTG .............................. TTCTCCCCAACAAGGTTAAAGAACGATATGCCTGT 2512958 30 100.0 35 ATATGCCTGT .............................. TGGAAATCTCAACAAGAGCGTTATTGTATATCTTA 2513023 30 100.0 36 GTATATCTTA .............................. CATAGGAAAAACCGATTACGAAGTGCTTTGTGATTG 2513089 30 100.0 TTTGTGATTG .............................. CCGCCACAAA ========== ====== ====== ====== ========== ============================== 22 30 36 ATTTCAATTCCATATTGGTGCAATTAGAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [299,176] Score: 0/0.18 # # Final direction: R [0.27,4.87 Confidence: HIGH] >NC_007517 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1195048 37 100.0 35 NNNNNNNNNN ..................................... ACTATGCGCTCCACTTTGGCCCTGATGTTGGCCGT 1195120 37 100.0 39 NNNNNNNNNN ..................................... CGCCAAATCCGCCGCGCTCCACTCCCGGCAGAAGTTGTC 1195196 37 100.0 34 NNNNNNNNNN ..................................... CAAGTCCGACTTGAAGATTTGTACTGTCGGCGCC 1195267 37 100.0 34 NNNNNNNNNN ..................................... ACCATCACCCCAGGGATCGGCACGGCCCGCATCG 1195338 37 100.0 41 NNNNNNNNNN ..................................... TTGGTGCCCCAGGAAGAGTGGAAACCGCTGATCAGCGTCCG 1195416 37 100.0 34 NNNNNNNNNN ..................................... TCGACCAACACCCCCGGCACGGTCATGTCGAAGG 1195487 37 100.0 34 NNNNNNNNNN ..................................... GACACCGGCCTCGACGGGTGGGACGCCGCCGCCT 1195558 37 100.0 34 NNNNNNNNNN ..................................... GGGAGGGACGGTGATATCGTGCAGGGAATACCAA 1195629 37 100.0 34 NNNNNNNNNN ..................................... ACCTGATGCTGCCCCTGCGGTCTGCCGTGCGCGG 1195700 37 100.0 33 NNNNNNNNNN ...............GC.................... AGGTCATTGGACCGGGCGAAGATGCGGCCCTGA 1195770 37 100.0 33 NNNNNNNNNN ...............GC.................... GGAATCAGTTCGCCGCGTTTTGTCCGAAGGTTA 1195840 37 100.0 34 NNNNNNNNNN ...............GC.................... ACACAGCCTCTCAATATACCGATATCTCCTATTT 1195911 37 100.0 1 NNNNNNNNNN ......T........G.....C..T..A.CAAC.G.G NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 13 37 34 GTAGCGCCCGCCTACATAGGCGGGCGAGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [9,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-17.00,-16.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [53.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [179,205] Score: 0/0.18 # # Final direction: F [5.92,0 Confidence: HIGH] >NC_007519 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 885036 29 100.0 32 NNNNNNNNNN T...C........................ ATGGTTCCCGCAAATCCGCGTTGCCTTTTCAG 885097 29 100.0 32 NNNNNNNNNN ............................. ACAATCACATGCAGATATGCTGACGTGGCAGA 885158 29 100.0 32 NNNNNNNNNN ............................. GCAATACGCCTGTTCCACTCTTGGCGCGCCGC 885219 29 100.0 32 NNNNNNNNNN ............................. CAGGATGAGTACGCGGCGCCTGTGCCTGACGG 885280 29 100.0 32 NNNNNNNNNN ............................. TACTATGCAGCCCGCAAAAACGCCGCTGACAG 885341 29 100.0 32 NNNNNNNNNN ............................. TTCAAGCATAGCAACTACATTGTATGTGAACA 885402 29 100.0 32 NNNNNNNNNN ............................. GTCCACGCATAGCCGCCCGCAATGCTAGCCAC 885463 29 100.0 32 NNNNNNNNNN ............................. ATAGTCTTCCCGCTTGTCTTCGTATTCTTCGC 885524 29 100.0 32 NNNNNNNNNN G....T....................... GTACGGCATGACACCGAGTATCGAGACCGCGC 885585 29 100.0 32 NNNNNNNNNN ............................. GTCGGTACGCTGGGGGACGATTCGAGCAGAAC 885646 29 100.0 32 NNNNNNNNNN ............................. ATGCGCGTTACCCGCGTGTCAATGTCGTCCAC 885707 29 100.0 32 NNNNNNNNNN ............................. ACCCGAAACGCCGCCGTCATCGAGTGCTATTG 885768 29 100.0 32 NNNNNNNNNN A............................ TCGGTCAGGTGCGAGAGCTTGATACCGGCAGC 885829 29 100.0 32 NNNNNNNNNN ............................. GGGTCTGACTTTATCTGTTCCGGCGTGTTAAT 885890 29 100.0 32 NNNNNNNNNN ............................. ATAATTTTCGCCGAACGCGCGTTTCTGCAGGT 885951 29 100.0 32 NNNNNNNNNN ............................. ATGCTGGATATGGCTGACGCCATCGGCCACGG 886012 29 100.0 32 NNNNNNNNNN ............................. AGTCCACCACCGCCCAAGAAGGTGATAAGATA 886073 29 100.0 32 NNNNNNNNNN ............................. TTCGGGATGATAAAAGACGTGGTGAATTTGGG 886134 29 100.0 32 NNNNNNNNNN ............................. TCTTCCACTTCCACCGCAACGCCCTGCCCATG 886195 29 100.0 1 NNNNNNNNNN ............................T NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 20 29 32 CGGTTCATCCCCGCGGGTGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [4,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [371,96] Score: 0.18/0.18 # # Final direction: R [0.18,0.27 Confidence: LOW] >NC_007577 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================== ====== 1409201 21 100.0 24 NNNNNNNNNN ..................... TTTCACTGCCGTTTACCTCTTCCT 1409246 21 100.0 30 NNNNNNNNNN ..................... CTTCAACTACTTTTACCTTTGGCTCTTCCG 1409297 21 100.0 30 NNNNNNNNNN ..................... CTTCAACTACTTTTACCTTTGGCTCTTCCG 1409348 21 100.0 1 NNNNNNNNNN ..........AA..A....TG NNNNNNNNNN ========== ====== ====== ====== ========== ===================== 4 21 28 CTTTTACTTCCTCTTCTTTAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:71.43%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [799,191] Score: 0.18/0.18 # # Final direction: F [0.59,0 Confidence: HIGH] >NC_007615 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================== ====== 147 22 100.0 31 NNNNNNNNNN ...................... CACTTTTTAATGTGGATAAAACAGGTTAAAA 200 22 100.0 30 NNNNNNNNNN ...................... CAACTCTTCACAGGTAGTTTTTACCTCAAA 252 22 100.0 1 NNNNNNNNNN ...................... NNNNNNNNNN ========== ====== ====== ====== ========== ====================== 3 22 30 GTCCGAGGTTTGGCTCCCAATT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [63.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [148,578] Score: 0.18/0.18 # # Final direction: R [0,0.82 Confidence: HIGH] >NC_007633 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================================== ====== 339324 38 100.0 37 AGCAAAAAAC ...................................... TACTGATATGGGATATATGTTTGATGGTGCTTATTTT 339399 38 92.1 37 TGCTTATTTT ..T.......................T..A........ AAGAGGTATGGCAGGTATGTTTAAAAGTACAAAAAAC 339474 38 100.0 37 TACAAAAAAC ...................................... AGGAGATATGACTGAAATGTTTTGCTTTGCCAAATCA 339549 38 92.1 TGCCAAATCA ..T.......................T..T........ TACTGATATGG ========== ====== ====== ====== ========== ====================================== 4 38 37 TTCAACCAACCCATTGGTAACTGAGACACCTCAAATGT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:57.89%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.10,-4.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [3-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [341,260] Score: 0/0.18 # # Final direction: F [0.68,0.37 Confidence: LOW] >NC_007643 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1363865 37 97.3 40 GAGTAATCCA ..................A.................. GATTGGGATAGCTCCCTCCACCCTCCGGCCTCTGGAACAC 1363942 37 100.0 44 TCTGGAACAC ..................................... GATATGCCCTTGCACGCCACCATCCTTCGGCCGGACGGGACCGC 1364023 37 100.0 38 ACGGGACCGC ..................................... CCGCAAACTGAAACCCCCACCGAGTTTTCCTTGCTGAT 1364098 37 97.3 39 CCTTGCTGAT ..............A...................... GTTGACATGGCGAAGGGTGCGCAGGATTACCGCCCCGAT 1364174 37 100.0 39 CCGCCCCGAT ..................................... CTACAACGCCAAGAGCGGCCTCGTTAAGCTGGGGTTCCC 1364250 37 100.0 41 TGGGGTTCCC ..................................... GACCAGCTTGTTCTTCGCCCCGATGATCCCGACTTTCGCGG 1364328 37 100.0 38 ACTTTCGCGG ..................................... ACGTCCGGGGCGCTCGCGCCCAGGCTTTCCTGGAAGGG 1364403 37 100.0 CCTGGAAGGG ..................................... AGCCGGTTCT ========== ====== ====== ====== ========== ===================================== 8 37 39 GTTTCAGTCCCCTCGATGGCGGGGCATAGGGTGCGAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.70,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [48.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [179,210] Score: 0/0.18 # # Final direction: R [0,1.42 Confidence: HIGH] >NC_007643 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1580591 29 96.6 32 GCGAATTTCG ........T.................... ATCGCCGACGCCGCCCTGGTCGAGGCTAACCG 1580652 29 100.0 32 AGGCTAACCG ............................. GCTCGACACAACGAACGCGCGACTGGCCGAAA 1580713 29 100.0 32 CTGGCCGAAA ............................. ATGTAAAGGCCGATCGCCGCAGCCAGGGCGGA 1580774 29 100.0 32 CCAGGGCGGA ............................. ATCGCCAGCGGCAAACACCACATCACGCAAGC 1580835 29 100.0 32 TCACGCAAGC ............................. GGATCCCTAAAGCGGATATCGGCGAGCACGAT 1580896 29 100.0 32 CGAGCACGAT ............................. GCTGCCGTTTTGGAAAGTGCGGGTCTCTGGGT 1580957 29 100.0 32 GTCTCTGGGT ............................. CTGGCGACAAGAGCCACAATTGACGCCCCAAG 1581018 29 100.0 32 ACGCCCCAAG ............................. TGGAGTGCCAACCCCTGGGTCGCCGCCGTGAC 1581079 29 100.0 32 CCGCCGTGAC ............................. ATTTCGATTTCAGCCGTCTTCGTTGCGTGAAC 1581140 29 100.0 32 TTGCGTGAAC ............................. TCCCGTTGTCTCTGAGAGGACGTTAAGTCGCA 1581201 29 100.0 32 TTAAGTCGCA ............................. CCGCTCGGCACGGGGGCGGGGGCGGGTTGTAG 1581262 29 100.0 32 CGGGTTGTAG ............................. GAGCCGCTGCGCTCGCAAATGCTCAACGGGGA 1581323 29 100.0 32 TCAACGGGGA ............................. ACGAATACCTGCGCCCGGTCAATCGGGATGAC 1581384 29 100.0 32 TCGGGATGAC ............................. GAGTGGCGGGCCGGAGCGATTGATATCGATGG 1581445 29 100.0 32 ATATCGATGG ............................. TCCCCATTGGCGATGCAGAGGGCGCACAATGG 1581506 29 100.0 32 CGCACAATGG ............................. TGCGCGCCAGTTTGCGAGGATGAGGGCGATCA 1581567 29 100.0 32 AGGGCGATCA ............................. GACGCCGGCGAGATGTCCATGAAGGACTACGT 1581628 29 100.0 32 AGGACTACGT ............................. TACACCTTTGTCCCAAACGGCACGAAGGTGAT 1581689 29 100.0 32 CGAAGGTGAT ............................. GGTCGCGCAGCGTGATGAGGTCAGTCATGATC 1581750 29 100.0 32 AGTCATGATC ............................. GCGCGTCGGCGGACCAAGCCAGCAGAGACGAG 1581811 29 100.0 32 CAGAGACGAG ............................. GTTCGCTGGGCAGGCCATGATGGGGGATTGGA 1581872 29 100.0 32 GGGGATTGGA ............................. TTTGGTTTGGTTGCCCGACTGCGAATCAGCGG 1581933 29 100.0 GAATCAGCGG ............................. TCATCGACGG ========== ====== ====== ====== ========== ============================= 23 29 32 CGGTTCATCCCCGCGTGTGCGGGGAACAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [38.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1041,286] Score: 0.18/0.18 # # Final direction: R [0.18,1.05 Confidence: HIGH] >NC_007643 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 198739 29 100.0 32 CGAGGAGGCC ............................. GAATCCCAAGGTTTCGCCTGAATCGACCCGCG 198800 29 100.0 32 TCGACCCGCG ............................. GCTGCCGGGGCGGACGAGGGCCGGGTGGATTA 198861 29 100.0 32 GGGTGGATTA ............................. AGATCGGTCCAGGCCCGACTGCCCAGATTGAC 198922 29 100.0 32 CCAGATTGAC ............................. CGATCACCCTGGAATATTTGCGCATGGGGGCG 198983 29 100.0 32 CATGGGGGCG ............................. ACTCACGATAGCAGTACCCGGTCGAGCCATCG 199044 29 100.0 32 CGAGCCATCG ............................. CCGACAATATTGGGAGCAAGCCGGTCATCGAG 199105 29 100.0 33 GGTCATCGAG ............................. ACCCCAGGCCGTTTGATTTTGCTCGCTGATCTG 199167 29 100.0 32 CGCTGATCTG ............................. TCCCGCCATCGCCCCCATGACCAAGTCAAGGG 199228 29 100.0 32 AAGTCAAGGG ............................. AGCCCCACGGCCTCGGCCTCAAGGGTCGCCAT 199289 29 100.0 32 GGGTCGCCAT ............................. AGCGAAAATCACCTATTGCGATCGTGATGAAG 199350 29 100.0 32 CGTGATGAAG ............................. TTCTGGTGATGGGGACCGCCGATCATTTCGGG 199411 29 100.0 32 TCATTTCGGG ............................. TCGTTAAGACGTTGCAATCGCGCGAACAGGCG 199472 29 100.0 32 CGAACAGGCG ............................. GGCGCCGGTGAAGTCGGCCTTCCAGCCTAAGG 199533 29 100.0 32 CAGCCTAAGG ............................. CGCAACAGGGTGTAACGCACCTCGCCTGACGC 199594 29 100.0 32 CGCCTGACGC ............................. CGGGCCCAGGATGACGGCGGAGCGCTGGAGGC 199655 29 100.0 32 CGCTGGAGGC ............................. GGGGCAGATGGGCGACTTCAGGGCGCTGCTGG 199716 29 100.0 32 GCGCTGCTGG ............................. AGGTCGGGCTGTCCGTTGAGGCGCTGCAGGAA 199777 29 96.6 32 GCTGCAGGAA T............................ CTCACGGTCAAGCACCAGACCCATCTCATGGG 199838 29 100.0 ATCTCATGGG ............................. TCATCAACGG ========== ====== ====== ====== ========== ============================= 19 29 32 CGGTTCATCCCCGCGCATGCGGGGAACAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [26.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [285,147] Score: 0/0.18 # # Final direction: F [0.78,0.27 Confidence: MEDIUM] >NC_007643 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================================== ====== 213822 38 100.0 52 AGAAGTCCGG ...................................... AGGTGGCCGAGGCCGGCTATCCAGTTGAGGCGGACTTTTATCGGAAGTGCGT 213912 38 97.4 39 GGAAGTGCGT .....................................T CCCGCCCCGCCGGCCAATCAGCCGACCGTGGAGCAGCGC 213989 38 100.0 36 GGAGCAGCGC ...................................... GGACTGCGTCGAAGATGATCTCCAGGGGCGTATGTT 214063 38 100.0 36 GGCGTATGTT ...................................... CCTTTAGCCGTTCTGCAGAAAAGCGCCTCTTTAGGC 214137 38 100.0 CTCTTTAGGC ...................................... GCCCCCTAAAA ========== ====== ====== ====== ========== ====================================== 5 38 40 GTTTCAATGAGGCCGAGGCATTACTGCCTCGGGAGACG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [8,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-15.30,-15.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [45.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [488,130] Score: 0.18/0.18 # # Final direction: R [0.45,5.28 Confidence: HIGH] >NC_007643 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 1694117 31 100.0 36 GCACATAAAG ............................... GCCCTCCGGCCAGACCGGAGACAGGTCCGGGGAGTG 1694184 31 100.0 33 CCGGGGAGTG ............................... TTTAGCGATGATCGCGAGGCCCCGGTCCTCCGG 1694248 31 100.0 33 GGTCCTCCGG ............................... TCTTTTCGCGCAGGCGCGGCGGATGAAGCGAGA 1694312 31 100.0 35 TGAAGCGAGA ............................... GCGCGGCGGTCGACGATCTGTTGCGCGCGCACCGT 1694378 31 100.0 33 CGCGCACCGT ............................... AACGGGTACTCGATTTAGCCCGCCGACGCGGGC 1694442 31 100.0 34 CGACGCGGGC ............................... TCGCGGGGGATGGTCAGTGCGCCAGGGACGTTGA 1694507 31 100.0 35 GGGACGTTGA ............................... CCAACCCGGACGTCGCCGCCGCCGTCAAACGCGGG 1694573 31 100.0 34 CAAACGCGGG ............................... CATACGCCGCGAGCTGCTTGGCTTCTCGCAGGCA 1694638 31 100.0 33 CTCGCAGGCA ............................... GATGGAACGGAAAAGTCCGATAAGGCTTGGCGC 1694702 31 100.0 36 GGCTTGGCGC ............................... TTTCTTTTCTCTGAGGATTTGCAAAAGCAATTCTTA 1694769 31 96.8 32 GCAATTCTTA ...............T............... AATCGCATGTGGTTTGATGATTGTGCCCCGAG 1694832 31 100.0 36 GTGCCCCGAG ............................... GCGCAGGCCGTTGTGGTCATGGAGACGCCAGCGGCC 1694899 31 100.0 33 GCCAGCGGCC ............................... AACAGCCTCTTCAAGCATCCGAGCTTGACCGCT 1694963 31 100.0 35 CTTGACCGCT ............................... CGTTAAGCCGGGAGCAGCGCCCGCAGCCGGCCAAG 1695029 31 100.0 33 GCCGGCCAAG ............................... GCCACACGACGAGCATTTTCGTCGGGGATGGGG 1695093 31 100.0 34 GGGGATGGGG ............................... CTCGGCTCTGACCTATGTTGAGGTCGGGGAGATC 1695158 31 100.0 34 CGGGGAGATC ............................... TGGGAGCGCGCCTTTGGTCGAGGCGGACTTTGAC 1695223 31 100.0 34 GGACTTTGAC ............................... GCGCGTCGCCCATTTTTTGGCCCAGGCCGCGCAT 1695288 31 100.0 36 GGCCGCGCAT ............................... CCGAGGTACGCGCTTCCAGCGCCGTGACCTTCGCCA 1695355 31 100.0 33 ACCTTCGCCA ............................... ACCAAGGCTTGCGCCAAGCCCCCGGCCCGGTCG 1695419 31 100.0 35 GGCCCGGTCG ............................... CTTTGGAGCCAGACGGAACCTACGCGGCGACCAGC 1695485 31 100.0 33 GGCGACCAGC ............................... ACAGGGCATTGTGCTCACTGACGAGCAGCGCGG 1695549 31 100.0 36 AGCAGCGCGG ............................... TCGGAGAAGAGCGCCGCTAAAACCGCGTTTTATTCA 1695616 31 100.0 33 GTTTTATTCA ............................... GCAGGACGTGGCCCGGGTGCGCCGGTACCGCCA 1695680 31 100.0 33 GGTACCGCCA ............................... ACGGCGGACTTGCCCGCCGACCGTTTTCCGATG 1695744 31 100.0 34 TTTTCCGATG ............................... GCCGTTCGTGGCTGCGCAGATCGCCTACATTCGG 1695809 31 100.0 34 CTACATTCGG ............................... GTTGGGTGCCCGTAGAAGAGGCCGCAATCGCCGC 1695874 31 100.0 32 CAATCGCCGC ............................... CCCCGGCTCGGCGTCCTCCCCCCACCCGTTGG 1695937 31 100.0 CACCCGTTGG ............................... TCCCCGGAGT ========== ====== ====== ====== ========== =============================== 29 31 34 GTTTCAATCCACGCCCCCGTGAGGGAGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [6,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.30,-5.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [36.7-38.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [243,195] Score: 0/0.18 # # Final direction: R [0.37,4.87 Confidence: HIGH] >NC_007643 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2668113 37 100.0 38 AGAACCGGCT ..................................... GCGCCGGTGAAGTTGGCGCCGGTGCAATCGGCGCTCCT 2668188 37 100.0 38 CGGCGCTCCT ..................................... ACGCTGGCACTATACGGTGCGTGGTCCGAGAGCTCCGA 2668263 37 100.0 38 AGAGCTCCGA ..................................... GTCCTCATCGAAGTCCTCATCCTCGACCGGGGCACCCC 2668338 37 100.0 38 GGGGCACCCC ..................................... TCGAGGGATCCCATATCCAAAGCGCCGAACGAGTTGAA 2668413 37 100.0 36 ACGAGTTGAA ..................................... AAGCGTTGTCTGTCGGCAGGGCGCCGAGGACGGCAC 2668486 37 100.0 39 AGGACGGCAC ..................................... AAGCACTTTCGTAAGGTTCACTGGGGTTACGGCGGCAAT 2668562 37 100.0 39 CGGCGGCAAT ..................................... GCTTCGATCGCACGGATCCGATCCTTCAATCCAGTCCGG 2668638 37 100.0 38 TCCAGTCCGG ..................................... CACATGGCGTGAACCTTGCGCGCCAGCGGATTGGCCGC 2668713 37 100.0 40 GATTGGCCGC ..................................... CCGTCCTGGAAGAAGACAACCCATTGCGAGGGGGTCTCAT 2668790 37 100.0 43 GGGGTCTCAT ..................................... TCGAGCGGCGGGAATTGGCCCTCTTGGATGGGGGATTTTTCCA 2668870 37 100.0 35 GATTTTTCCA ..................................... TTGTTCTTGTCTTCATCCGAGGGTTTGTTTGTCTT 2668942 37 94.6 38 TGTTTGTCTT .........C...........T............... AGGGTGGTGAGGAATTCATAGCGGCTGTGCGTGGCCTT 2669017 37 94.6 37 GCGTGGCCTT .........C...........T............... CAACAGAAACGGTATCAGCCATGGTAACTACTCCCAC 2669091 37 94.6 38 CTACTCCCAC .........C...........T............... ATGGCTAATGAATGTATTGAACGTTTATTATCCAACAA 2669166 37 94.6 37 TATCCAACAA .........C...........T............... TCGGAGGTAACGCCATTGTCGGCGCCGTCGTCTTCGG 2669240 37 94.6 38 TCGTCTTCGG .........C...........T............... CTCCCAAGCCGCCACCAGGGCGGCTTTGGCGCGGGCGG 2669315 37 94.6 40 GCGCGGGCGG .........C...........T............... CCCGGGGGGTGTCGCGGTCTTAGTATTCCAGGATCCGCGC 2669392 37 94.6 39 GGATCCGCGC .........C...........T............... GGTGTCGGCGACCATGCGCTGATCATTGCCGGTCGGAAT 2669468 37 94.6 40 CGGTCGGAAT .........C...........T............... GAGGGAGAGCCCACCGTACTGAAAAGCGAGGTGGCGCATC 2669545 37 94.6 39 GTGGCGCATC .........C...........T............... TCGGCGGGCAACTCGAAGCAAAGGGCGCGGGTGGTGGTT 2669621 37 94.6 GGTGGTGGTT .........C...........T............... TACTCTTCGC ========== ====== ====== ====== ========== ===================================== 21 37 38 CTCGCAGCCTATGCCCCGCCACCGAGGGGACTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-8.10,-8.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [56.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [356,206] Score: 0/0.18 # # Final direction: F [0.64,0 Confidence: HIGH] >NC_007643 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2715965 37 100.0 36 TTAGGGGGCC ..................................... AGGTGTTACAGGAGTCTCAACGACTGGGGTTGTGGG 2716038 37 100.0 36 GGGTTGTGGG ..................................... TTCGTATTCCCATAGATCTTACCCGTGGTCGTAAGG 2716111 37 100.0 41 GGTCGTAAGG ..................................... CGGACGGGCAGCTTCAGATACTTCAGGGCACTCTCGTACCC 2716189 37 100.0 38 TCTCGTACCC ..................................... ACCGCGATTTCTTTCGCCTCTTCGAGCGAGGCGACGGG 2716264 37 94.6 AGGCGACGGG .......T...............A............. TCCTCTGACCC ========== ====== ====== ====== ========== ===================================== 5 37 37 GTCTCCCGAGGCAGTAATGCCTCGGCCTCATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [8,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-15.70,-15.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [131,264] Score: 0.18/0.18 # # Final direction: F [5.28,0.18 Confidence: HIGH] >NC_007643 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3524497 37 100.0 43 AGAACCGGCT ..................................... TCGAAATCACCTTCGTCATCCTCGACCGGGATATCCCGGACAC 3524577 37 100.0 39 TCCCGGACAC ..................................... GACCACGATCAAGCGCCCCAAGATGTGCTCGCAGACCAC 3524653 37 100.0 38 CGCAGACCAC ..................................... AACGCGGGGCCGTGCAGGCCGTTCGTCTCGGCGTCCAA 3524728 37 100.0 38 CGGCGTCCAA ..................................... TTCTATCCTTGGATTGAGTGGGGCGAGAAACCCGCCCG 3524803 37 100.0 40 AACCCGCCCG ..................................... CTGTAGGAGGCATAAAACTCTTCTCGAGTCAGGGTGTCGA 3524880 37 100.0 38 AGGGTGTCGA ..................................... CAAGTCAACGGCGAAAGCTCGCGCAAGTGTTTGACCAA 3524955 37 100.0 39 GTTTGACCAA ..................................... CTTCCTCGGGCTCCTCGGGGTCTTCGTCGAAGCCATCAA 3525031 37 100.0 39 AAGCCATCAA ..................................... ATTCTTCGGGTGAGGGATCCCAGGTGCCAAGAAGCTCGA 3525107 37 100.0 39 AGAAGCTCGA ..................................... CCCGAACCCCAGCTTAACGCGGCCGCTCTCGGCATTGTA 3525183 37 100.0 CGGCATTGTA ..................................... TTGTCATACCC ========== ====== ====== ====== ========== ===================================== 10 37 39 CTCGCAGCCCTTGCCCCGCTATCGAGGGGACTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [7,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.10,-11.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [51.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [373,234] Score: 0/0.18 # # Final direction: F [0.64,0.37 Confidence: LOW] >NC_007643 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 420333 29 100.0 32 NNNNNNNNNN ............................T TACTACACCGAGCCCCGCATTATCCGGGTGCG 420394 29 100.0 32 NNNNNNNNNN ............................. GCGCGGGCATCATCTGCCCCGCACACCATAGC 420455 29 100.0 32 NNNNNNNNNN ............................G TTTGGCGAATACCCCATGGTCCAAGGCGCTAT 420516 29 100.0 32 NNNNNNNNNN ............................. GACGCCGCGAACGTCCTGACCGAAGCCCTGGC 420577 29 100.0 32 NNNNNNNNNN ............................. TGGCGGCGGCGTTTCGCGCTGAAGGCGCCCTG 420638 29 100.0 32 NNNNNNNNNN ............................. GCCGCCGGGACCGGGGCGCAGGCGATCTACAA 420699 29 100.0 32 NNNNNNNNNN ............................. CTCGGCAATGCGAGGGATCACGTCGCCGGAGC 420760 29 100.0 32 NNNNNNNNNN ............................. CTACTACGCCCGACAGGCGATATTGGATAAGC 420821 29 100.0 32 NNNNNNNNNN ............................. TTAATCCCCGATCTCAGGGGGAGGCTGGAATG 420882 29 100.0 32 NNNNNNNNNN ............................. AACAGACGACAGCGGGATCATCCTGGCATCGA 420943 29 100.0 32 NNNNNNNNNN ............................. TGCGTAAGCTGCGTTCCTTGCTGGATTAGGGC 421004 29 100.0 32 NNNNNNNNNN ............................. AAGCCCGGGGTTTATGGAGAGCATACCATGAC 421065 29 100.0 32 NNNNNNNNNN ............................. CCCGGACGCCTTTTGGTGGACGACGCCGCAAA 421126 29 100.0 32 NNNNNNNNNN ............................. ATGACTGCATGACCGAGGCGCTTTATGCCGAG 421187 29 100.0 32 NNNNNNNNNN ............................. TCTAGGCCCCGGTACGCAGTGCTCACGCGTAC 421248 29 100.0 32 NNNNNNNNNN ............................. GACATCGACACGCCTCCGCCGACGACGGCCAC 421309 29 100.0 32 NNNNNNNNNN ............................. CGGGTAATCTCGCTGTGAAGGCTGACTTCACC 421370 29 100.0 32 NNNNNNNNNN ............................. CGGCCGAATGTTGCCCGCCCCTCCCCCTGTCC 421431 29 100.0 32 NNNNNNNNNN ............................. ACCACGGGGAATTCCCGATGCTCCGCCTCCTG 421492 29 100.0 32 NNNNNNNNNN ............................. GTGCGCGACAACATGGGGTGGGTGCGCGATCA 421553 29 100.0 32 NNNNNNNNNN ............................. ACGATCGGGTCTTTGCGCCAGTTCGGCGACCA 421614 29 100.0 32 NNNNNNNNNN ............................A TGTTCCGTCTGGCTCCAAGGTGTCGTAATCGC 421675 29 100.0 32 NNNNNNNNNN ............................. TTGCCGCGAATGCGGCGCCCCCCTGGCGGTCG 421736 29 100.0 32 NNNNNNNNNN ............................. GTGCTCTCCGCCATACCTTGGGTGGAGCAGAA 421797 29 100.0 32 NNNNNNNNNN ............................. GCCGTGCTCGATCGATGCGATCTCGGCAGTGA 421858 29 100.0 32 NNNNNNNNNN .........A...C............... TGCCGACCGCCTGAGGCGCGAGGCCGAGGTGA 421919 29 100.0 32 NNNNNNNNNN .........A...C............... ACCGCGCGGTCCTCCCTTCATTATCGATTTCA 421980 29 100.0 32 NNNNNNNNNN .........A...C............... CATGTCGCCCGCACAGCGGGAACTGGCCGCCC 422041 29 100.0 34 NNNNNNNNNN .........A...C............... GAGCACACCGAGGCGCTTGCCCGGGCGGCTGCGG 422104 29 100.0 32 NNNNNNNNNN .........A...C............... AGCCTTCTCATCTGGGCGGCAAAGCATGTTGC 422165 29 100.0 32 NNNNNNNNNN .........A...C..............G TGATGAATCTCCAGGATCGCCTTATTGCTCAG 422226 29 100.0 32 NNNNNNNNNN .........A...C............... GTGTGTGAACGGACAAAACACCGCCCTCTGCT 422287 29 100.0 32 NNNNNNNNNN .........A...C............... CTTCAAAAACCCGCGATTTCCGCCGCGATTGC 422348 29 100.0 32 NNNNNNNNNN .........A...C............... CGGCCAGGACAGCACATAAGCGGCCCCGCCGC 422409 29 100.0 32 NNNNNNNNNN .........A...C............... GTTGCTGTTCGTCAGGATCGCGCCGAGAAGCG 422470 29 100.0 32 NNNNNNNNNN .........A...C............... CCGCCCTTGTTCTGATAGGCGGACCAGATCGT 422531 29 100.0 32 NNNNNNNNNN .........A...C............... AGCCCCCGGAATTCCCGCTCACTTGCGGTGCC 422592 29 100.0 32 NNNNNNNNNN .........A...C............... GCCGTAATGCCGCAAGACCCCGGCTTGGCGCG 422653 29 100.0 32 NNNNNNNNNN ............................. ATCCAATCATCTGGCTCGCGGTTCGAGCCGCT 422714 29 100.0 32 NNNNNNNNNN ............................. TCGGCGGGAAGTTCATTTCGTGCATTGCGATT 422775 29 100.0 1 NNNNNNNNNN ............................A NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 41 29 32 GGTTCCCCCGCACTCGTGGGGATAGACCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-10.70,-6.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [59,230] Score: 0.18/0.18 # # Final direction: F [1.05,0.55 Confidence: LOW] >NC_007705 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 857969 31 100.0 34 GACGCGTCAT ............................... TCTGCGACGGGGTTACCAGCTCCAGCCCGTCGCG 858034 31 100.0 36 GCCCGTCGCG ............................... GGTATCCCAGCAAAGACTTGCTCATACCCGTCGGGC 858101 31 100.0 34 CCCGTCGGGC ............................... GGCGGACAACATTGTGGGTCTTCCGGGATGCGGT 858166 31 100.0 35 GGGATGCGGT ............................... CCGTCAATCTGCTCGCCGTTGAACACCGTCGCAAA 858232 31 100.0 34 CCGTCGCAAA ............................... TCGCACCGACAGCGCCCTGATTGAGTATGTGCAG 858297 31 100.0 36 GTATGTGCAG ............................... GTGGCGCGAGCGCTATAACAAGCGCTCGTTCTACGT 858364 31 100.0 33 CGTTCTACGT ............................... CGCTTCACGGGCCGTGGATACGTTACTACCCAT 858428 31 100.0 36 TACTACCCAT ............................... TGCCGGCCTGGTGGTCTTTGACATGCTGGACAACGT 858495 31 100.0 34 TGGACAACGT ............................... GGGTGCAGGAGTTCATTTACAAATACCGCAAGGA 858560 31 100.0 33 ACCGCAAGGA ............................... CAGACACAGCCCTCACCGTTGTAAGGACACTTG 858624 31 100.0 35 AGGACACTTG ............................... GGTCACAATGCTGTGCCGTTTGGGCTTAAGACCAA 858690 31 100.0 37 TTAAGACCAA ............................... GTTAAGACGGGTTGGGTACTGCTCAAGCATCTGATTG 858758 31 100.0 34 CATCTGATTG ............................... CAGCTGCAAAGACCATGCGGTCAAGTCCTGCTGG 858823 31 100.0 36 GTCCTGCTGG ............................... GTTGCGTCTGATATCAGCCTTGGCAATTTGTTGGTC 858890 31 100.0 34 TTTGTTGGTC ............................... CACCAATAAAATGACTGATATTACCGCTAAGCTG 858955 31 100.0 35 CGCTAAGCTG ............................... GTTGAGGGATCATCTGCGAGACCTCACTGGCAACC 859021 31 100.0 33 ACTGGCAACC ............................... CATGCATACATACTGGCACAGGCAGGCACCCAT 859085 31 100.0 34 AGGCACCCAT ............................... GACTGTTGAGCAGGCAATATTGCTGACTGTGGGT 859150 31 100.0 34 GACTGTGGGT ............................... ACGCTCGGGATTTGGTGACATGCTAGTTTTCAAC 859215 31 100.0 33 AGTTTTCAAC ............................... CAGCGTTTGGAGCTGCTGTGTTGCAGACGCCTG 859279 31 100.0 34 CAGACGCCTG ............................... GTTCGAAGTCGCTTGCTGAGAGGCTGGAGGCCGC 859344 31 100.0 34 TGGAGGCCGC ............................... ACCCTACACCGAGAGCAGCTGACACGCCATTGTC 859409 31 100.0 35 CGCCATTGTC ............................... ATATTACGACACACAGTGCAGATACAGCCACACAA 859475 31 100.0 35 AGCCACACAA ............................... TGCAAAATAAAAGCCTGAAATGCAGGTATGTCAAT 859541 31 100.0 34 GTATGTCAAT ............................... ATGTGGTATAACCTAACATAACCCTGAGGAGTAA 859606 31 100.0 34 TGAGGAGTAA ............................... GGGTTCGGAGTTTTGAGCTTCCCTTCTCCTGGCA 859671 31 100.0 35 TCTCCTGGCA ............................... AGTCGCAACAGACGGATTAGCAGCAGTGATTGCTG 859737 31 100.0 35 GTGATTGCTG ............................... TCAACCCTCCCCACATTAATGCCAGGAGTTAACAG 859803 31 100.0 36 GAGTTAACAG ............................... CACTGCCTCATCAACACAAGATCCCCGTCTACCGGA 859870 31 100.0 35 GTCTACCGGA ............................... TGTAGCGGCCTTGTCGACCTCAGTCACCAGCGATT 859936 31 100.0 35 ACCAGCGATT ............................... TTGCGCAGCAGGAGCAGCCCCGGCAAATCGACCCA 860002 31 100.0 35 AATCGACCCA ............................... GCCATCATTAAGATCATCACGGCCAATAACGGAGA 860068 31 100.0 35 ATAACGGAGA ............................... CTGCATAACACGGTAACTCAGTTCGCCAGGGATCC 860134 31 100.0 34 CCAGGGATCC ............................... GCGAAGAAGACAGACACCACTCACGTCATCGCGC 860199 31 100.0 34 GTCATCGCGC ............................... CACCAACGCCTCTTACCTTGTCCACAACATTCCA 860264 31 100.0 35 CAACATTCCA ............................... ATCCGTGGCGCATGCAGGCCGTGCCGGTAGCACCA 860330 31 100.0 34 GGTAGCACCA ............................... TAATTGTCTGTCCAGTTCGTGGTTGTACCATCGT 860395 31 100.0 35 GTACCATCGT ............................... CCGGCTGTATGCCCATCCAGCTGTGCCTCCAGGGC 860461 31 100.0 35 CCTCCAGGGC ............................... GTGCGCCATACAACATGCACGCCGGCGAACATCCG 860527 31 100.0 35 CGAACATCCG ............................... CGTCTTGCAAGGTAGCCCTCCCATCTGCTTAGGTT 860593 31 100.0 35 TGCTTAGGTT ............................... CTTGGAGAGTCAATGCAAGGATGCTGGCTGCACTG 860659 31 100.0 36 GGCTGCACTG ............................... TATTTGCCAACACACCAACACACGGGAGTATTGTAT 860726 31 100.0 34 AGTATTGTAT ............................... GGGTGCAGCTGACCTTTAGTAGCACAACTACTAA 860791 31 100.0 35 CAACTACTAA ............................... CCACCCACGGCCCAAGGATAGGCTCTACCTAGTAC 860857 31 100.0 35 TACCTAGTAC ............................... TCAACAAGCCCCAGGACTGAGTTGCAGCCCCTGTG 860923 31 100.0 36 AGCCCCTGTG ............................... AACGGAGAACTTCCTCCCTGCTCAAGCCATAGGTTT 860990 31 100.0 33 CCATAGGTTT ............................... CATCGACATGCGCGCACGGATCTTGCGTATGTC 861054 31 100.0 34 TGCGTATGTC ............................... CTAGACGGGGCAGTTAATCACAGGCACAGGGCGA 861119 31 100.0 CACAGGGCGA ............................... GCCGCCAGCA ========== ====== ====== ====== ========== =============================== 49 31 34 GTTTCAATCCACGCGCCCGTGAGGACGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [6,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-4.90,-5.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [545,189] Score: 0.18/0.18 # # Final direction: R [0.82,5 Confidence: HIGH] >NC_007643 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 530188 36 100.0 30 TACGTCATGG .................................... CGGGTAGATAGGCGCAATCGGTTCTCGGAT 530254 36 100.0 30 GTTCTCGGAT .................................... GGCGAGCCGTGCGCACCGGTCCTCCCCCCA 530320 36 100.0 30 CCTCCCCCCA .................................... CATGAAAGGAATGCCCAGATGAGCAAATCC 530386 36 100.0 30 GAGCAAATCC .................................... TGATCCAGTCATCGCCCATCCCGGCCTGGG 530452 36 100.0 CCGGCCTGGG .................................... GTCACCAG ========== ====== ====== ====== ========== ==================================== 5 36 30 ACTCTACCATGGCGGTGTGGGACGGGGCCATGGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [7,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.70,-4.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [31.7-31.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [201,248] Score: 0/0.18 # # Final direction: F [0.74,0 Confidence: HIGH] >NC_007644 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 505882 37 100.0 35 ATGCCGTCCT ..................................... GCTATGGATTTTGAGTCTGCCATGGCTGATGTTAG 505954 37 100.0 35 CTGATGTTAG ..................................... GGCTGGTCAAAGTAAACCCCTCCGGCACTTCGCAG 506026 37 100.0 35 CACTTCGCAG ..................................... GTGCACAACAAAGCGGCAGAGATGGGGCTTAAACG 506098 37 100.0 35 GGCTTAAACG ..................................... TGATTTATCCTGTGCCCTTGGAAGAGACACAAAAG 506170 37 100.0 35 GACACAAAAG ..................................... GTATTAGCGCTGATGTCGCTATCAAGGCCCTTGTG 506242 37 100.0 36 GGCCCTTGTG ..................................... ATGAGATTTTTGTTTTGCGTTTCCTGCGCGACCAGG 506315 37 100.0 34 CGCGACCAGG ..................................... GATTCTGTTGGATGGCAAAGCTTACTTAGTGGTT 506386 37 100.0 35 CTTAGTGGTT ..................................... TAGGCCCTCCAGGTAGCCGTTAATGGCAGCGCAGA 506458 37 100.0 35 GCAGCGCAGA ..................................... GCCCACGAGGTTTATGAAAATGATTATTTTGTGCT 506530 37 100.0 35 ATTTTGTGCT ..................................... TTGACGGCCTGAACCCCCATATGGCCGTGATCGAT 506602 37 100.0 36 CGTGATCGAT ..................................... GTCATTGGCGAGTCAGGACAGGTATATGTAGACATT 506675 37 100.0 34 TGTAGACATT ..................................... GACCGAATTTCGGCTCCGCTGCGGACTATAGAAA 506746 37 100.0 36 ACTATAGAAA ..................................... GACAATAGGCAGCATATGCCCCCGTATTCGGATTCG 506819 37 100.0 35 TTCGGATTCG ..................................... GGCTATTTGGCAAAACGATTGAGATGATACAAGAT 506891 37 100.0 35 GATACAAGAT ..................................... GACCTTCCGGTGGTCCTCTAGCTTCCGGCCCTGCA 506963 37 100.0 34 CGGCCCTGCA ..................................... TTGCGTATCAGACGAAGGGTTAAAAGCACCGTCA 507034 37 100.0 35 AGCACCGTCA ..................................... TTTCGGCTTCGGGGCCTTATATTCCTTGCCATCCA 507106 37 100.0 35 TTGCCATCCA ..................................... GTAGATCCATATCCGATCAAGTCCAAGAATATGTT 507178 37 100.0 35 AGAATATGTT ..................................... GCACCTTCACCTGCTTAAATTATACCACATTTCCA 507250 37 100.0 34 CACATTTCCA ..................................... ATTTGTTCGCCATTTGAAAGAGTGGCGAACGAGT 507321 37 100.0 35 GCGAACGAGT ..................................... CTCTCGCCCGAAAAAAATCCTCAAAAAATTTTTCG 507393 37 100.0 35 AAATTTTTCG ..................................... ATTAGACGGTCTTACCAAAGGTCTAATCAGGACAG 507465 37 100.0 35 ATCAGGACAG ..................................... GATACGCCAGGCTGTGCAAGCCTTTCGGCTATACG 507537 37 100.0 CGGCTATACG ..................................... ACTTCGCGCT ========== ====== ====== ====== ========== ===================================== 24 37 34 GTTTCAACCCTCGCCCGGCATGGAAGCCGGGCGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-15.70,-16.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [43.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [50,173] Score: 0.18/0.18 # # Final direction: R [0.37,0.82 Confidence: MEDIUM] >NC_007643 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 989382 32 100.0 34 NNNNNNNNNN ................................ AGCTAAATACAATAACGATAAAAGAAATACGGAT 989448 32 100.0 32 NNNNNNNNNN ................................ GCGTCGATCGCGGGCGCGGGCGCCTTGGCCGG 989512 32 100.0 34 NNNNNNNNNN ................................ ATCCAGGGGCCAGTCGCGCGAGACCTCCCGGCGT 989578 32 100.0 34 NNNNNNNNNN ................................ GGGCACGACGCCGTTGATCGCCTTGGCCACCGCC 989644 32 100.0 35 NNNNNNNNNN ................................ CTCGATCTCCCGACGCAGGGCTGTTTGCTCCTCGG 989711 32 100.0 35 NNNNNNNNNN ................................ CATACCGAGTTGGCGGAGGGCTTCGGGCACCACGA 989778 32 100.0 34 NNNNNNNNNN ................................ TGCAAATATCCGTGGCGCTGGCCAGCGCCAAAAA 989844 32 100.0 33 NNNNNNNNNN ................................ GGGAGATTGAGGGGCTGCAAAAGGTCCCCCGTC 989909 32 100.0 35 NNNNNNNNNN ................................ TTACTGCATCAAAATGCAGACGCCCTTGGCCTGTC 989976 32 100.0 32 NNNNNNNNNN ................................ CTTGCCCGCCCCGCCCGCCACCACCCATGGGC 990040 32 100.0 33 NNNNNNNNNN ................................ GCCCGCCAGAGAGGCCTGGAGCTAACGTGGACA 990105 32 100.0 35 NNNNNNNNNN ................................ TCTTGGGCCTCGGTGCTATCGACGCGGTCGACGTT 990172 32 100.0 35 NNNNNNNNNN ................................ GTACCCTCGCCCTTAAGAAGGTGGGCAAGGTTCCC 990239 32 100.0 34 NNNNNNNNNN ................................ AAGGCGTGCTCGATGCCGACGCCGGCGGACAGGA 990305 32 100.0 34 NNNNNNNNNN ................................ CGTTCTCGGTCTACATCGACCCCGAGGCGGATAC 990371 32 100.0 34 NNNNNNNNNN ................................ CCACCCATCTTGGCCAAACCACGATAGCCGGCTC 990437 32 100.0 35 NNNNNNNNNN ................................ ATCCGGAGCCGGGTCAGCGACAATCCGTATCTGGT 990504 32 100.0 34 NNNNNNNNNN ................................ GAGGATGACGGCGAGGACGAATCGCCGGAAGACG 990570 32 100.0 35 NNNNNNNNNN ................................ CGGCCCCGCCCTCCTCCCCTCCCCGGCGCGGTGCT 990637 32 100.0 33 NNNNNNNNNN ................................ CATCCGCTGGATGATCGTGGCCTTCATCGGCAT 990702 32 100.0 33 NNNNNNNNNN ................................ ACAACGGCCACGGTGACCTATGACGCCCTCGCC 990767 32 100.0 33 NNNNNNNNNN ................................ TCTTTTTCCGGGGCCAAGCTACGCCAAGTCACG 990832 32 100.0 34 NNNNNNNNNN ................................ TGGCGCAGTTGCTCTGCCTCGACCGTCCCGGCTT 990898 32 100.0 33 NNNNNNNNNN ................................ GACCGCTTTTAGCGCGCCGGTATGCGACTTGGC 990963 32 100.0 33 NNNNNNNNNN ................................ TCGCATATCAAAGATCCCCAGGTACTCGACAGC 991028 32 100.0 33 NNNNNNNNNN ................................ GATCAACAAAGGCGATCGTCAAGTATGTCTCAA 991093 32 100.0 34 NNNNNNNNNN ................................ TCCGTCGGCCAAGACGAAATGTCGTTTCGGCGCC 991159 32 100.0 33 NNNNNNNNNN ................................ CACATTAGCCGGCGGTATCCAATGGATTACCTT 991224 32 100.0 34 NNNNNNNNNN ................................ AAGATCGATGTTTTCGACGAGATCCACGCCGCGT 991290 32 100.0 32 NNNNNNNNNN ................................ CTGGCCCGCGCCATGGCCGGTGGTGGCGCGAT 991354 32 100.0 34 NNNNNNNNNN ................................ TCGTCACGGGTCATCCGCCGGCTGAAGATCACGC 991420 32 100.0 34 NNNNNNNNNN ................................ AGATTTAGGCCAACCCGCCGGATCTGGTCCGCGA 991486 32 100.0 34 NNNNNNNNNN ................................ TCGTCACGGGTCATCCGCCGGCTGAAGATCACGC 991552 32 100.0 34 NNNNNNNNNN ................................ AGATTTAGGCCAACCCGCCGGATCTGGTCCGCGA 991618 32 100.0 34 NNNNNNNNNN ................................ CGAGGGCTTGTCCTCATTGCACGCCGAAAGGCCC 991684 32 100.0 34 NNNNNNNNNN ................................ GGGTGCTCGCCGTCAAGGACGCTACGCGCCGGCT 991750 32 100.0 34 NNNNNNNNNN ................................ TCGACCCGCAGTATGAAATAAATAAGCGGCGCAG 991816 32 100.0 1 NNNNNNNNNN ................................ NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 38 32 33 GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [5,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [51.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [206,535] Score: 0.18/0.18 # # Final direction: F [0.64,0.18 Confidence: MEDIUM] >NC_007644 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1772658 29 96.6 37 TCTCCACCCT ........................A.... TCTGCCAGGTGGCCGTGGATAGTTTTGATCAACTGCC 1772724 29 100.0 37 ATCAACTGCC ............................. CGTAGTTGGACTTTTATGCGCAGCAAGGCCCCCGGTA 1772790 29 96.6 36 GCCCCCGGTA ....................A........ CCAGTTTTTGCCGATGAGGACCTGGGATTGCTTCAG 1772855 29 100.0 35 ATTGCTTCAG ............................. AAATGGCCGTAAAACTGAAAGAGGCGGGATTAAAA 1772919 29 100.0 36 GGGATTAAAA ............................. CTAATATTCCAGTGCTTTTTAACCTATTATATCTAA 1772984 29 100.0 36 TTATATCTAA ............................. GTGCAGTTACCCAAATACCGCATTACGGTGAGCCAG 1773049 29 100.0 36 GGTGAGCCAG ............................. AGTTTAATTCCTCTACAGGGAAGGTTACTGTTATGA 1773114 29 100.0 37 ACTGTTATGA ............................. TCACCCAGGGAACGTGATGCCTGGGTGGCTCAATGTA 1773180 29 100.0 35 GCTCAATGTA ............................. GGGTACCCCGGTGGCGTATGGAGCGGCTTGGGACG 1773244 29 100.0 35 GCTTGGGACG ............................. ACTCAACGGGTTTGAAAAGTACCTCTACATGAGCG 1773308 29 100.0 38 TACATGAGCG ............................. GAGATTTGCCGGCAGAAATATTTTATTCCCTGCCCGAA 1773375 29 100.0 37 CCTGCCCGAA ............................. CGAAGACGCCTGCCGCCTGGACCACCTGGACGAAAAG 1773441 29 100.0 36 GGACGAAAAG ............................. AGTTTAATTCCTCTACAGGGAAGGTTACTGTTATGA 1773506 29 100.0 37 ACTGTTATGA ............................. TCACCCAGGGAACGTGATGCCTGGGTGGCTCAATGTA 1773572 29 100.0 35 GCTCAATGTA ............................. GGGTACCCCGGTGGCGTATGGAGCGGCTTGGGACG 1773636 29 100.0 35 GCTTGGGACG ............................. ACTCAACGGGTTTGAAAAGTACCTCTACATGAGCG 1773700 29 100.0 38 TACATGAGCG ............................. GAGATTTGCCGGCAGAAATATTTTATTCCCTGCCCGAA 1773767 29 100.0 37 CCTGCCCGAA ............................. CGAAGACGCCTGCCGCCTGGACCACCTGGACGAAAAG 1773833 29 100.0 36 GGACGAAAAG ............................. AATAAAGACCTTCTCCGAATTCAAGCGATCTGGTAG 1773898 29 100.0 36 GATCTGGTAG ............................. GGGTGGGAATGTTGAGAGAAGAGCTCCGAGAGCTTG 1773963 29 100.0 36 CGAGAGCTTG ............................. CTTTATGAATTTCGGCTCTCCGCCTACGCCCCGTAA 1774028 29 100.0 35 CGCCCCGTAA ............................. CGGTTGTCGCCCCGACTGGAAACCTCGGTGAGTAA 1774092 29 100.0 35 CGGTGAGTAA ............................. TCTTCATATTGCCTTCAGGGTCATCAGTAAAAGGA 1774156 29 100.0 37 AGTAAAAGGA ............................. CCCTGTCACGGAAGAAACCACCTGGCTCCGAGCCGGA 1774222 29 100.0 35 CCGAGCCGGA ............................. TAAAATGCTTGATGCGGATTTAATTGATGTTTATA 1774286 29 100.0 37 GATGTTTATA ............................. GCAAAAAGAAAACCGGCTTATTTGTCGCCGGTTTCTT 1774352 29 100.0 37 CCGGTTTCTT ............................. TCTTCGTAAATCGACTTCTTTTGCTTGATATGCCGCA 1774418 29 100.0 36 ATATGCCGCA ............................. TGCCGTACTCTTCTTCACCATGCCAGACGATCCATT 1774483 29 100.0 37 ACGATCCATT ............................. CTTCGGCCCACGGCACGGAAACTTATGCTTATAAACC 1774549 29 100.0 34 CTTATAAACC ............................. CCGGAAGGGGACAAACACTTTGTGCCCCTTAACA 1774612 29 100.0 35 CCCCTTAACA ............................. TGGCACACTCGCGGCACTCATTCCGCGTTATCGGG 1774676 29 100.0 36 CGTTATCGGG ............................. GCTTCGACGGTTTACGGGGCTATTCCGTCATCGCTA 1774741 29 100.0 35 GTCATCGCTA ............................. TGCTACGTCCAGCTTCAATATCCGCTATAAAAGAA 1774805 29 100.0 37 TATAAAAGAA ............................. TTGAACACGGTCGATGCAATCCATCCATTGAAAAGCT 1774871 29 100.0 36 TTGAAAAGCT ............................. AAACAGGATCGGCCAGCAGCCGTTCTTCCTGGGGAT 1774936 29 100.0 34 TCCTGGGGAT ............................. CCGGAGCAGGCTAACGGACCGGTAAAGACGACCC 1774999 29 100.0 36 AAGACGACCC ............................. CTCTTTTGCCCCATTTACAAATACAGCAATCTCCGA 1775064 29 100.0 36 CAATCTCCGA ............................. CTGCCGTGGGGATGGTCAGGGTTTCGGGAGAGCGGG 1775129 29 100.0 36 GGAGAGCGGG ............................. CGCTACTGGCGTAGAGAATTGACTTCAGGCGGTCGA 1775194 29 100.0 37 AGGCGGTCGA ............................. CCTGATACCACCGCGGCCAATGACCTTCGGGTAAGTA 1775260 29 100.0 37 CGGGTAAGTA ............................. GGTCGCCATTGCCTGCGGGGCTGTTGATAAGCTTAAA 1775326 29 100.0 36 TAAGCTTAAA ............................. TTCGACGGGCAGAAAACTCAAGGGCGCAAGGGCAAA 1775391 29 100.0 35 CAAGGGCAAA ............................. GGGTGCTAGACCCGCAGGAGGGGACGGTGGAGTTT 1775455 29 100.0 36 GGTGGAGTTT ............................. ACGTAGAGCATAACGTCGAGACTTTGAAAATCTCCC 1775520 29 100.0 35 AAAATCTCCC ............................. GGCTGGCCGAAAAGGAAGGAATAATTGTAGATTAT 1775584 29 100.0 36 TGTAGATTAT ............................. AATCTGCTGTTGATTATAGTACTACTTTTACCGCAG 1775649 29 100.0 TTTACCGCAG ............................. CGCAGATGAA ========== ====== ====== ====== ========== ============================= 47 29 36 GTTCAAATTCCTCTATGGTCGATGGTCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.17%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.90,-0.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1517,83] Score: 0.18/0.18 # # Final direction: R [0.18,0.41 Confidence: MEDIUM] >NC_007645 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 2917501 32 100.0 35 NNNNNNNNNN ................................ ATGTGCGGATCTGAAGCACCGTATCGCCGTGCTGG 2917568 32 100.0 34 NNNNNNNNNN ................................ CAGCGAAAGTCGATCTCGGATACAATCAATGAAG 2917634 32 100.0 35 NNNNNNNNNN ................................ ACTAATAAACTTGATGATTGGGAAACTTACACAAG 2917701 32 100.0 35 NNNNNNNNNN ................................ ACTAGAGCACGGCTTCACTAGAGCACGGCTTCACT 2917768 32 100.0 34 NNNNNNNNNN ................................ CTGAGAAGCCGGTCAAGAAATCCGCCAAGAAAGA 2917834 32 100.0 35 NNNNNNNNNN ................................ TTCATGTACAAGCGCGGTCCGCTAGTCACCCCGAC 2917901 32 100.0 34 NNNNNNNNNN ................................ TGGTCCATCTGTGCGGCCATGGCGAGCATCTCAG 2917967 32 100.0 35 NNNNNNNNNN ................................ TTCAGCTCCAAAGCCGTATTCGTTTCTCATTTATC 2918034 32 100.0 35 NNNNNNNNNN ................................ CGGTATTTGCGCAGAATACCAAGTCACCAACTTAG 2918101 32 100.0 34 NNNNNNNNNN ................................ GTGTCAGCCTGGGCAGGTCAACGCGGTGCCAGCT 2918167 32 100.0 34 NNNNNNNNNN ................................ ATTTACAGGCCCTTTTGATACTGGGTGCGAAAAA 2918233 32 100.0 33 NNNNNNNNNN ................................ AGTCAGGCCGGCCCGCGATGGATGATGCTTTAA 2918298 32 100.0 34 NNNNNNNNNN ................................ TTGACGGCGCTATCCTGTGCGCGGCGGGCAAGGC 2918364 32 100.0 33 NNNNNNNNNN ................................ ATCATGAAAAAGAAGATGGTAGAGGATCTCTAT 2918429 32 100.0 35 NNNNNNNNNN ................................ AGCGAATAACCATGCAGGTCAGAGTCCTTAAGCGA 2918496 32 100.0 36 NNNNNNNNNN ................................ TGTGTCCGCATGAGCGAGACAGTATTCATAGACCAG 2918564 32 100.0 34 NNNNNNNNNN ................................ ACCGCCAACCAAAGTATTAGTCGACGACATAACC 2918630 32 100.0 34 NNNNNNNNNN ................................ TTCTAACTTTATTTACAACAGACGTAAATTGATC 2918696 32 100.0 30 NNNNNNNNNN ................................ ACCGCAAGCAAGCTATCAACTTTAGAAAAT 2918758 32 100.0 34 NNNNNNNNNN ................................ CGGTGAGCCTGTCACAGATACCTTGGTTATTGCC 2918824 32 100.0 34 NNNNNNNNNN ................................ GCGAATGTTTATTTCGAGGCGGGAGAGATCCCTG 2918890 32 100.0 34 NNNNNNNNNN ................................ TAACAATCAGGGTTGTTGACAAAGTGAACAAAAT 2918956 32 100.0 34 NNNNNNNNNN ................................ CCCTTGGCAACAAGTGGAGACGAATTACCATAAC 2919022 32 100.0 34 NNNNNNNNNN ................................ GATCCAGCGGCGGGGAGATACACAATTGTCTCGC 2919088 32 100.0 35 NNNNNNNNNN ................................ AATCGTAATAGCGGCGGGTTTGGCCGCTTATATAA 2919155 32 100.0 34 NNNNNNNNNN ................................ GGCGACAGTGTGTGTAAGGTGGGCGTTTTGTTGT 2919221 32 100.0 35 NNNNNNNNNN ................................ CTTTTGGGGGTGGGAATGATCGCGCTCCCGTATGC 2919288 32 100.0 34 NNNNNNNNNN ................................ GACTGGTCTGCGACCATTGGCGGCATTAAGTTTG 2919354 32 100.0 34 NNNNNNNNNN ................................ GACTGGTCTGCGACCATTGGCGGCATTAAGTTTG 2919420 32 100.0 33 NNNNNNNNNN ................................ TCCGATCTTGCGATCAGTTATATGGATTAGCTC 2919485 32 100.0 34 NNNNNNNNNN ................................ CTGCGATTAAAGAAGGCCGGACCGTTGTTACTAA 2919551 32 100.0 36 NNNNNNNNNN ................................ ATGATGATCCACAACCCGTCAACCATTGCGTGGGGC 2919619 32 100.0 33 NNNNNNNNNN ................................ CGAAGCTGGCGCGGGAGCTGATTACGGCCCATG 2919684 32 100.0 33 NNNNNNNNNN ................................ AGGATTTCAGGCATAAGGAAAATTCCCCCTCTC 2919749 32 100.0 34 NNNNNNNNNN ................................ CAAACACTGAGAAAAGCCCTAACGCAGCTAAATC 2919815 32 100.0 36 NNNNNNNNNN ................................ TGACCCTGATCCTTGTATTGCCGTTATCAACGAAAG 2919883 32 100.0 34 NNNNNNNNNN ................................ GAAGGCTCAATACGTAACCCTAGGTCAATCGTTC 2919949 32 100.0 33 NNNNNNNNNN ................................ AGGGGAAAAAGAAAAAACAAACAGCGGTGAAAA 2920014 32 100.0 34 NNNNNNNNNN ................................ ATGAGACCACCTCTATCTTCGAGCCGTAGAATTT 2920080 32 100.0 33 NNNNNNNNNN ................................ GCCCCTTAGCTCTACACCGGGGCGATCAATCAC 2920145 32 100.0 34 NNNNNNNNNN ................................ GAATGAAAGCTATTGACGGACTGGGTAGAGCATT 2920211 32 100.0 35 NNNNNNNNNN ................................ ACTGCTCTGCGACCCCGGCATCAATGGATATCGGA 2920278 32 100.0 34 NNNNNNNNNN ................................ GACTCAGGAGGTCATAAAGACAATGCAAAAAAAG 2920344 32 100.0 34 NNNNNNNNNN ................................ CTGCTCTTTGTCTGTTAGTCGAACGGTAGATGGC 2920410 32 100.0 35 NNNNNNNNNN ................................ TTAAGCATCGAGCGAAGCGAGCTGCCGAAGCGCAG 2920477 32 100.0 34 NNNNNNNNNN ................................ GCGTCCGTCGATCTGGATCTACCTAACACCGAGC 2920543 32 100.0 35 NNNNNNNNNN ................................ TGCAAGCGCCGGAAGAGAAAACCGTCGCAGCCGGG 2920610 32 100.0 34 NNNNNNNNNN ................................ AGGAATTTGAACCGCGTGAAAAATGGGAACCGTA 2920676 32 100.0 33 NNNNNNNNNN ................................ TGCAATTGCATTAACAGCTGTTGAAAGCATTTG 2920741 32 100.0 34 NNNNNNNNNN ................................ CATGCATGGCATTGCGCCTCAGACGGTCCACCAG 2920807 32 100.0 35 NNNNNNNNNN ................................ ATCCATTTAGATACGGTTGTGGTGTGAACACCCAA 2920874 32 100.0 35 NNNNNNNNNN ................................ GGCTCAGCGCCCTTAACCCTTTTTATTACAAGTGA 2920941 32 100.0 34 NNNNNNNNNN ................................ AGCATAAATTCCACCGGCATTAACATGAGTCCAG 2921007 32 100.0 35 NNNNNNNNNN ................................ GTAAAGTCTAATGATTTGGTCGCTTTTATTCGGGG 2921074 32 100.0 34 NNNNNNNNNN ................................ CATGCCAAGGATACCTCCAACATTGTCCCGATGA 2921140 32 100.0 1 NNNNNNNNNN ..................ATA...G....... NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 56 32 34 GTCGCCTCCCATGCGGAGGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [6,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-9.40,-5.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [55.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [177,147] Score: 0/0.18 # # Final direction: F [5.28,0.27 Confidence: HIGH] >NC_007645 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 2905515 32 100.0 35 TAGTTAGACA ................................ CACCGTACAAGCAACATGCCGTGGACTGAGCACAG 2905582 32 100.0 35 CTGAGCACAG ................................ GTCGCCCCACCACGGCCAGCCGAAAAGGTTAGCCG 2905649 32 100.0 33 AGGTTAGCCG ................................ TTCAACGTCTCGCTGGTTAGCGCAATGAATACG 2905714 32 100.0 34 AATGAATACG ................................ GACCGATATCACACAAATCACTGCACCTAACGTA 2905780 32 100.0 35 ACCTAACGTA ................................ GGGCGACTCGCATGTGTGGTACTACAGAGGCAAGG 2905847 32 100.0 35 AGAGGCAAGG ................................ TCGATAACCTATAGCGGAGTGTGCGATGAGCGCAG 2905914 32 100.0 33 ATGAGCGCAG ................................ TGAACGTGATATGCGGACTCAGAGATGATCCGT 2905979 32 100.0 35 GATGATCCGT ................................ CAGCTTTGCGTTGTGGTATTTGATGATATTTTCAG 2906046 32 100.0 34 ATATTTTCAG ................................ TTGCTACAACAGCTGGCTGGTCCATTCTTGTTGG 2906112 32 100.0 34 TTCTTGTTGG ................................ GTGAGGATAGACAACCTGATAGACGGTTTTTTAC 2906178 32 100.0 33 GGTTTTTTAC ................................ GCGAAAAAATACCGGCGATACTTGGGGCCGGCC 2906243 32 100.0 35 GGGGCCGGCC ................................ TCATCCGGCGACAGCTCCCACACCGAGAACGGCAT 2906310 32 100.0 34 AGAACGGCAT ................................ TGGTCGCCGCTGTTGACGTTCAGGGTGGGGACTA 2906376 32 100.0 34 GTGGGGACTA ................................ TTAGGTCGCCACCCTTGCGCTTACCCCACGGACA 2906442 32 100.0 34 CCCACGGACA ................................ CAAATCAGCGCGGCGGCACCATCAGGGCGAAAAT 2906508 32 100.0 34 GGGCGAAAAT ................................ TCCGTCCAGCGCTGATTCTCGTTTCCATTTTGGC 2906574 32 100.0 34 CCATTTTGGC ................................ TCGGTAGACAACATCCCCAAACTATCCAATACGC 2906640 32 100.0 34 TCCAATACGC ................................ TGCTATCGGGTTGTTGATAATCCTGATGTTATGA 2906706 32 100.0 34 GATGTTATGA ................................ ATACAAACTCTCCGCTTGTTGCTGTAGCGCTGCC 2906772 32 100.0 34 TAGCGCTGCC ................................ AACATGGCTTATGGCCAAGGCCTGGATGATTATT 2906838 32 100.0 34 GATGATTATT ................................ AGATTCCCCGTTGGCTTTGGACAAATAACCCGCC 2906904 32 100.0 35 ATAACCCGCC ................................ GGTAGTGTAAACGTCCTTGCCACCTTTCTAGGTAT 2906971 32 100.0 34 TTCTAGGTAT ................................ ACTGAGAGCGACATAGCGGACATGCTCGGTTACA 2907037 32 100.0 33 CTCGGTTACA ................................ ACGGTTACGGATGTAAGCTCACCTGCAATTCTC 2907102 32 100.0 33 TGCAATTCTC ................................ ATATCGCCGGACTGCTCGCCCAGCGTCAGGTGC 2907167 32 100.0 34 CGTCAGGTGC ................................ AATAAATGACGCGTAAAGTTTGTCAGGCACCTGA 2907233 32 100.0 34 AGGCACCTGA ................................ GTAACCTGTCATCGTCACCGATCCGTCACAGCGA 2907299 32 100.0 35 GTCACAGCGA ................................ GCCGCGCAAGTAGTTCCCATATTGGCCCGTCATGG 2907366 32 100.0 33 CCCGTCATGG ................................ TCGGCCTCGCTCATGTCAGGCGGGAAATAGTCC 2907431 32 100.0 34 GAAATAGTCC ................................ GGCAAGTTTTCGTCTATCCAGTCCTGATCAAACT 2907497 32 100.0 35 TGATCAAACT ................................ CGGCCTTCCGGAGGATTACGAGGGGCGAGGATGAT 2907564 32 100.0 36 CGAGGATGAT ................................ GTAACGTAAGCCCGCACCCATAGAGCTAGGCAACGG 2907632 32 93.8 TAGGCAACGG ........A............G.......... CCAGAGGGTA ========== ====== ====== ====== ========== ================================ 33 32 34 GTCGCCTCCCACGCGGAGGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [6,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-11.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [301,336] Score: 0/0.18 # # Final direction: F [5.65,0 Confidence: HIGH] >NC_007681 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1091284 30 100.0 37 AAAGTTTCCT .............................. ACGACACAAATGAATACAGATGCAACTCAAATTACAA 1091351 30 100.0 36 CAAATTACAA .............................. GGAAGAGACCATAAAAATGTATTTACGGAATATATT 1091417 30 100.0 36 GGAATATATT .............................. TTTAAGTAACTCATCTGATAATTCAGTTAATGTTAC 1091483 30 100.0 37 TTAATGTTAC .............................. ACTAATATCAACAAACGGAATTTCAGCACTATTTGGG 1091550 30 100.0 36 ACTATTTGGG .............................. TAAGCATTACCATTAACAAATTTACAGTTTTCTACA 1091616 30 100.0 37 GTTTTCTACA .............................. AAAGAACGTTTAATGATTAATTCATCTTCAGAGTCAA 1091683 30 100.0 36 TCAGAGTCAA .............................. TGATTTAGAAACATATCAATATCCATTCGAAATAGA 1091749 30 100.0 37 TCGAAATAGA .............................. TATTTTCTAATAAATAGAGTAATGCTTCATCATTATC 1091816 30 100.0 36 CATCATTATC .............................. TCAGCATCATTTACACTAGCAACAAGGGTAGGAGTT 1091882 30 100.0 37 GGTAGGAGTT .............................. AAGTAAAAAAAAAAATCAAAAATAATAGAAAAAAAAA 1091949 30 100.0 36 GAAAAAAAAA .............................. CTAAAACTACACGTGTAGTAACAATACGTGTATCAT 1092015 30 100.0 37 CGTGTATCAT .............................. GCAATTTATCCAGACCCTGTTTCATCGTTACTTCAAA 1092082 30 100.0 36 TTACTTCAAA .............................. CACGTATATCCTGTGTCTTGTCGGTCATAATAGATT 1092148 30 100.0 36 ATAATAGATT .............................. ACAGGAAATAATTTATTTAAAGTAAAAGAATTTGAA 1092214 30 100.0 38 AGAATTTGAA .............................. TATGTTGTTAATACTAATTCTTCTATTATCTTCTCATA 1092282 30 100.0 36 TCTTCTCATA .............................. ACATCTTCAGCTTTATCTAATTTTTGAACATATCTT 1092348 30 100.0 36 AACATATCTT .............................. AATTGTGAAATAAAAAAAGAAGATCTTTTTAACAAA 1092414 30 100.0 37 TTTTAACAAA .............................. AATTTAATTACATCAGAAACTATTGATTCTGATGGTT 1092481 30 100.0 36 TCTGATGGTT .............................. AATAAAGATGTAGCTGAACGTACTTCTAAACGGTTA 1092547 30 100.0 37 TAAACGGTTA .............................. AGTACTAAGAAATGATTCCTCCATTAATATAACATTA 1092614 30 100.0 35 TATAACATTA .............................. TTTTCTTTACGTGTAGACCAGGAGAGTATATCTCC 1092679 30 100.0 36 GTATATCTCC .............................. GAAACTGGTAAATTACTTTATTATGGACGTTTTAAA 1092745 30 100.0 37 ACGTTTTAAA .............................. ATTGATATTGGAACAAGAGGATACACAAAATGGTCAT 1092812 30 100.0 36 AAATGGTCAT .............................. GCAAATGTATTTAAAGAACTTGTTACTAAACTTAAA 1092878 30 100.0 37 TAAACTTAAA .............................. TAAGAACTATCAAGCAATCCCTTATAATAACCTTTAT 1092945 30 100.0 37 TAACCTTTAT .............................. GTTGCATCACTAGGAAGAATAGTTTGAAGTAAAATTG 1093012 30 100.0 36 AGTAAAATTG .............................. TCTAGTTTAGATGATGGTTCTACTTTATCTTTACCT 1093078 30 100.0 37 ATCTTTACCT .............................. GGTTTTAATCCACGGGTGATTAGTGATGAAGAGTTTG 1093145 30 100.0 35 GAAGAGTTTG .............................. ACAGGCTGGTAAAAAACATTTTTGGAGGAAATAAA 1093210 30 100.0 36 AGGAAATAAA .............................. TCTACGCTTGGTCTTGATTCATGTTTATATGTAATT 1093276 30 100.0 37 ATATGTAATT .............................. GAAGCAAAACAAAAGGAGATACTGCAAGAATACTTAT 1093343 30 100.0 36 GAATACTTAT .............................. AGATTATCAACGCCTAGAATTTGTTGTATATCTTTT 1093409 30 100.0 36 TATATCTTTT .............................. ATAGAAATCATAATGTATATTTCTGAATACATTTTC 1093475 30 100.0 37 ATACATTTTC .............................. ATTACTGAAGAAGAGATTAATAATAAATTACCTGCAA 1093542 30 100.0 36 TTACCTGCAA .............................. GATACTATTGCAATTATTATATCTTGATTATACTTC 1093608 30 100.0 38 ATTATACTTC .............................. AAATGAATTGCACATACAACAAGAATCATAGTACAAAA 1093676 30 100.0 35 TAGTACAAAA .............................. AGAGCATTGATTGCAATATAATTGATTGTTTTCCA 1093741 30 100.0 37 TTGTTTTCCA .............................. AAAATTAATAGGTGTTGGATTATCATAAGCAATAGTA 1093808 30 100.0 37 AGCAATAGTA .............................. AATCAGTTAATAGGAGAACCTAATAATGCATAAAGAT 1093875 30 100.0 37 GCATAAAGAT .............................. CTTTCAGGCACAAGTATAGCTGTATCTACTATTTTTT 1093942 30 100.0 36 ACTATTTTTT .............................. TAGTATACACATCTTTTGGTTTATTGGAGTTTTCCT 1094008 30 100.0 38 GAGTTTTCCT .............................. AGAGTAAAAAAAGAACTATTTTTTAGTTTCTTTTTATT 1094076 30 100.0 38 TCTTTTTATT .............................. ATGGTTACTGTATTACTAATCCAATCACCAACTTTATA 1094144 30 100.0 36 CAACTTTATA .............................. GATATGAAATCTACACAACCTACAAAAGATATGCAA 1094210 30 100.0 36 AGATATGCAA .............................. TCTCTTGAAAATCCTGATAATAATATACTTGATAGA 1094276 30 100.0 36 ACTTGATAGA .............................. CGTATAAGTTATGGTACATTTAAAACAATGGCTGAA 1094342 30 100.0 36 AATGGCTGAA .............................. GAAGCAAACCATGAAAAACCAACTGAAAGATGTAAA 1094408 30 100.0 37 AAGATGTAAA .............................. GGTGTTAGTACAGGTATGGACGGATTACTCCATGAAA 1094475 30 100.0 36 CTCCATGAAA .............................. ATAAAAATAACAAATGGAACAACAACAAAAACAGTA 1094541 30 100.0 36 AAAAACAGTA .............................. GTCGTTGAACAAGAAATAAGAATTATAGAAAATAAT 1094607 30 100.0 37 AGAAAATAAT .............................. TTAACATCTACAAGGTCATGAAGAAGTTTTGTTTCAT 1094674 30 100.0 36 TTTGTTTCAT .............................. CGATACATTTTTAAATTACTTGTATCAGTAGTAATA 1094740 30 100.0 37 AGTAGTAATA .............................. ACTCTTACCCGATTTAATTATGAATATCTTCAAGCAT 1094807 30 100.0 36 CTTCAAGCAT .............................. GATGTAGAAGATGAAGTTGATGAATTTCTTGAAGAG 1094873 30 100.0 37 TCTTGAAGAG .............................. GATATCTTTCATATATTATCATTTTTATCATATTTTT 1094940 30 100.0 37 TCATATTTTT .............................. TTGGTAAAAGAAATAGCGGAAGACAATGAATACTCTG 1095007 30 100.0 GAATACTCTG .............................. GTATATTC ========== ====== ====== ====== ========== ============================== 57 30 36 AATAGAATAAGATCATAATGAAATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:83.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [81.7-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [125,88] Score: 0/0.18 # # Final direction: F [4.5,0 Confidence: HIGH] >NC_007681 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 490169 29 100.0 38 NNNNNNNNNN ............................. CGGATTTGATTAAAACGTATTACCCAATCATATATTTC 490236 29 100.0 37 NNNNNNNNNN ............................. TAGATATTTCAAATTTACAATTACCATTTAAAAAAAC 490302 29 100.0 38 NNNNNNNNNN ............................. AAGAACGTTTTGCTTCTAATTCAGAGTATAATACTTTT 490369 29 100.0 36 NNNNNNNNNN ............................. CCAATGAGGAAGAATATCTCGGTCTAGAAAAAGGAG 490434 29 100.0 37 NNNNNNNNNN ............................. AAGGAAATTATAATTATACTCACCAGTATGATATTAA 490500 29 100.0 37 NNNNNNNNNN ............................. CAATAGAGGAATAAAAACAATGTCAAGTATAATAAAA 490566 29 100.0 36 NNNNNNNNNN ............................. TTGAGGTAGAAATTGATAATGAGTTCATTAATGAAC 490631 29 100.0 26 NNNNNNNNNN ............................. TATATATGGAATAATATTGAAACAGT 490686 29 100.0 48 NNNNNNNNNN ..........AGT....A.TAGACTT..T AGTATGAAAACAACAAATAATATGTGTCATTATACTTATAGATTTTAC 490763 29 100.0 36 NNNNNNNNNN ............................. CTGGATAATCAATCCCTTTAAAACTAGCCGGACTAA 490828 29 100.0 37 NNNNNNNNNN ............................. TTCGTAGAGGTGGTGAGTCCAACAATTTTATTTTTTC 490894 29 100.0 37 NNNNNNNNNN ............................. CATCTTCCCATTCATAGTCTTGTTTAAATTCTCCATT 490960 29 100.0 37 NNNNNNNNNN ............................. TGATAACATTCAAAAAGATATGTGGAAAACAATCAAT 491026 29 100.0 36 NNNNNNNNNN ............................. CACTTGAAATAAAACACATAGTACAATTTCAACTGT 491091 29 100.0 37 NNNNNNNNNN ............................. AGGTCATCAATATCATATTCTTTTACAAGTGTATTTC 491157 29 100.0 37 NNNNNNNNNN ............................. TTATGAAAACAAGTGATGGAACAAATAAAACAATAAT 491223 29 100.0 36 NNNNNNNNNN ............................. GATGCTTTTAAATTAATATATTTTAATATTAATTCA 491288 29 100.0 38 NNNNNNNNNN ............................. ATAGTGAATATACAGACCCCCTTAAAAAGCCAACAATA 491355 29 100.0 38 NNNNNNNNNN ............................. TGAAAATTGATTATAAAAAAGTAGGAGATGTATTTGAA 491422 29 100.0 36 NNNNNNNNNN ............................. TATGGAATCACGTAAAAGAGCAACGTTGGGTTATCA 491487 29 100.0 37 NNNNNNNNNN ............................. TAACAAAACTACTCAAAACAAAAATAACAGAAACAGA 491553 29 100.0 38 NNNNNNNNNN ............................. AAAATGGAGATAAAACAGATTATAAAATGGAACTTATA 491620 29 100.0 36 NNNNNNNNNN ............................. CTTAGATGCAGTAGAAATGAAAATCTGTTATACTAA 491685 29 100.0 36 NNNNNNNNNN ............................. CATCTTCTGTATTTGGTGGAGTAATATATTTTTCAC 491750 29 100.0 36 NNNNNNNNNN ............................. AACTCTTTTTCACTATTTATTCCTATTTTCAAATAA 491815 29 100.0 37 NNNNNNNNNN ............................. GGTTTATTAATTCATCTTCAATATGTTTCATGTAATC 491881 29 100.0 39 NNNNNNNNNN ............................. TACCAATAAAATAGTCTTGATTTGTACTTTTAAGCTGGA 491949 29 100.0 38 NNNNNNNNNN ............................. AAATTATTGCTACAACAAAAGATACAATTACAATTACA 492016 29 100.0 36 NNNNNNNNNN ............................. TTTCATTATTTTGTTGTTCTTTGTTGTTGTAGTGTA 492081 29 100.0 38 NNNNNNNNNN ............................. AATGGATTTTGAGCATCATTATCAGGAGTAATACTTGG 492148 29 100.0 38 NNNNNNNNNN ............................. CAAATACTATAGATTACATAATACTTTTAACAGAAAAT 492215 29 100.0 38 NNNNNNNNNN ............................. TTTGTTTGAGGTGGAATTACTTGTGTATACATTGTATT 492282 29 100.0 36 NNNNNNNNNN ............................. TTATTTAAATGAAAGTGATATACCTAATACAACTCC 492347 29 100.0 36 NNNNNNNNNN ............................. GTAATGATTTCTACAGTGAAATTGAAGAATTTATAG 492412 29 100.0 37 NNNNNNNNNN ............................. TAATAGTGGACGTTTATATGTAAAGAATATTAAATTA 492478 29 100.0 36 NNNNNNNNNN ............................. CTAGACGAGGATAAAACAATTCCAAGTGATACATGG 492543 29 100.0 37 NNNNNNNNNN ............................. TAATGTTGCAAGACAAATAAAAGAAGTAATTAAGAAC 492609 29 100.0 37 NNNNNNNNNN ............................. TGATTATATTACTGAATCAGAAGCTTTTGACTACATA 492675 29 100.0 36 NNNNNNNNNN ............................. TACTTCCTCTACTGCAACAATTCTATAAAAAAAATC 492740 29 100.0 36 NNNNNNNNNN ............................. TTTAATCTTCTAAAACATAAATAATCATACAAAAAG 492805 29 100.0 37 NNNNNNNNNN ............................. GCAAATGGTGTTGATACAAATAATATTCGGGAAATGT 492871 29 100.0 37 NNNNNNNNNN ............................. CACCTATATGTACTAGAATTTACGCCCATTTCATAGG 492937 29 100.0 37 NNNNNNNNNN ............................. GCAAATGGTGTTGATACAAATAATATTCGGGAAATGT 493003 29 100.0 37 NNNNNNNNNN ............................. CACCTATATGTACTAGAATTTACGCCCATTTCATAGG 493069 29 100.0 36 NNNNNNNNNN ............................. CCAAACTGGGTAGAAGCAAATACTACTGCAAACAAT 493134 29 100.0 37 NNNNNNNNNN ............................. CATGAAAAATACATCACAAAAAATAAAACAAGTTACC 493200 29 100.0 36 NNNNNNNNNN ............................. TCTATTCTGTATATATTCAATTTAGGATAGAATTTC 493265 29 100.0 37 NNNNNNNNNN ............................. TAGTTTAGTGCCCTTAGTATTTAAAGGTTTGTTCATA 493331 29 100.0 36 NNNNNNNNNN ............................. GAATACAACACTTTAAATACTAGAAATGACAAATAA 493396 29 100.0 36 NNNNNNNNNN ............................. ATCTATATTGGGAAAAAAGAAGGCACTTCTTTTAGA 493461 29 100.0 38 NNNNNNNNNN ............................. TTTTTATTACTTGCTGCTAAATCCCATACACGACAATA 493528 29 100.0 41 NNNNNNNNNN ............................. TGGATATAATATGACTGAAATAGGTCGTAATAGTAAAGCTG 493598 29 100.0 40 NNNNNNNNNN ............................. CGGAGATATGTGCCAATTAATTCATCACCTACCTCTTCAT 493667 29 100.0 40 NNNNNNNNNN ............................. CAAAATTGGATGTGGACTATAAACAGCTACTTTTTTAAAC 493736 29 100.0 36 NNNNNNNNNN ............................. ACAAATAAAACACTAACAGAGTATAGTATTGATAAT 493801 29 100.0 39 NNNNNNNNNN ...................A......... TTGAACACCATGAAAAGAAATGCCCGTGTTTTTATTTTT 493869 29 100.0 36 NNNNNNNNNN ............................. CACTCTCACAATCCTTATGATGAATGTATCTACTTC 493934 29 100.0 37 NNNNNNNNNN ............................. GTCTTATCATCAGAATTTTCATCAACAACATCTATTT 494000 29 100.0 38 NNNNNNNNNN ............................. CTTATGAAGGAGAAAAAGAAGTCGAATATAAAAGACAC 494067 29 100.0 37 NNNNNNNNNN ............................. CACTTGTAACTGTACCACCACCAGTATAACATAATAC 494133 29 100.0 36 NNNNNNNNNN ............................. CTTGAGTCAGGAAACTTTGAAATACATCATTATAGA 494198 29 100.0 1 NNNNNNNNNN ..................T...AA.CC.A NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 62 29 37 GTTTAAAATAGACTTAATAGTATGAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [12-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [107,147] Score: 0/0.18 # # Final direction: R [0,0.41 Confidence: MEDIUM] >NC_007759 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 2747517 32 100.0 34 TTATCAATGC ................................ ATAGTGCTTGTATGCATCCGGAGCGGCGTGCTTT 2747583 32 100.0 35 GGCGTGCTTT ................................ TTATTTACCTCCCATGTTGTGTTGTTTCCAGTTAT 2747650 32 100.0 36 TTCCAGTTAT ................................ CCGGAACCCCTCCGGGAAGGAAATCCCAATACGACG 2747718 32 100.0 34 CAATACGACG ................................ ATAATTCACCTCTACGATTTGGATTTTAGACAAC 2747784 32 100.0 34 TTTAGACAAC ................................ ATAATTCACCTCTACGATTTGGATTTTAGACAAC 2747850 32 100.0 34 TTTAGACAAC ................................ ATAATTCACCTCTACGATTTGGATTTTAGACAAC 2747916 32 100.0 33 TTTAGACAAC ................................ GTGCCTCGAGTTTGTAGGGCATGTAAATCAAGG 2747981 32 100.0 35 TAAATCAAGG ................................ ACGCCTGCATCGGCTGAATCCGTGGGGTCACAGCG 2748048 32 100.0 35 GGTCACAGCG ................................ ACGGCGCAACGGCACATCGACCGAGTAACGCGGAC 2748115 32 100.0 33 TAACGCGGAC ................................ GATAGAGGTTCGGTTGCCAGACTCCTGATAAGC 2748180 32 100.0 34 CCTGATAAGC ................................ GATGCAAAGAGCCAAGGATTTGCCCGATATGCGG 2748246 32 100.0 34 CGATATGCGG ................................ GGTTTGCAATCCGCACCCTGCGGCAGATCGACAG 2748312 32 100.0 34 AGATCGACAG ................................ TCTCATAACTGAGGACGGGGCTTATTTGACTGAC 2748378 32 100.0 34 TTTGACTGAC ................................ CTTGACTAATAAGCAATGTCATATTAATATGGTA 2748444 32 100.0 36 TAATATGGTA ................................ ATGCATAGAGGGGCCAACAAATGGCATGGAAGCCCG 2748512 32 100.0 34 TGGAAGCCCG ................................ ATTGTCTCCCCTGGGCGCTTCCCACCCCCATAAG 2748578 32 100.0 33 CCCCCATAAG ................................ TCCGCTACGGCTGATTTCTATGCCCGTTTTGGG 2748643 32 100.0 34 CCGTTTTGGG ................................ ATTAGATTGCAGAGGGGAGACATTGACCCTCAAG 2748709 32 100.0 33 GACCCTCAAG ................................ ATTAACGTCAGTTCCTTCGGGAATTGATTCTCG 2748774 32 100.0 36 TTGATTCTCG ................................ ATGCTCCAGCTTGTCCTCGGTTCCGTATTGCAGGGA 2748842 32 100.0 35 ATTGCAGGGA ................................ CCGGATGACACATTGAGGTGAGCCTATGCAATTCG 2748909 32 100.0 34 ATGCAATTCG ................................ CCTATCCCTATATCCTGAACGGTTATCATTTCCG 2748975 32 100.0 34 ATCATTTCCG ................................ TGGCCAGGGAATCATTTTTCCGCATTGTTGTCCA 2749041 32 100.0 33 TTGTTGTCCA ................................ GATGACAGCGCGGAAGAAATCGCAACCGTATTA 2749106 32 100.0 35 AACCGTATTA ................................ GCGAATATCAGGGCATGTGCGCGGACTGCATCGAA 2749173 32 100.0 33 CTGCATCGAA ................................ ATTGAACCGGCTTGCAACCAGACGGGGAGCAAA 2749238 32 100.0 34 GGGGAGCAAA ................................ TTTATCGTCGTTATTCCCGCGCCGTTGCGTTCTG 2749304 32 100.0 33 TTGCGTTCTG ................................ TATTCGTAACCGCAGGGTTGATGACATGATTCA 2749369 32 100.0 37 ACATGATTCA ................................ TATTGATTCCTCTCATCGTCTCCTGAGGTAGGCAGGG 2749438 32 100.0 34 GTAGGCAGGG ................................ ATGGGTTAAGGGTTACTGAGTTATATTGCCCATT 2749504 32 100.0 35 ATTGCCCATT ................................ GAGAGGGCGGCTATCGTGCGCCAGGTGGCATTGTA 2749571 32 100.0 35 TGGCATTGTA ................................ GCCCCTGTTCCCGGTCGGTCAGGGGAAGCAGAAGG 2749638 32 100.0 36 AAGCAGAAGG ................................ GTCCTGTGCCTCCTTTGGCCCGGTCTGAAGGGGATA 2749706 32 100.0 34 GAAGGGGATA ................................ ATGGCGATCCGTTCCGATCCTTCCGTTTTAAGCT 2749772 32 100.0 33 GTTTTAAGCT ................................ GAATATCTGGGATACAGCAACCTACTGTCTGGA 2749837 32 100.0 33 ACTGTCTGGA ................................ TCTATCGGGACACCGGCAAGATGAGCGTTGACG 2749902 32 100.0 35 AGCGTTGACG ................................ TTGGCGTCCATCGCCTGTTTTAGCCGCAGCGCAAC 2749969 32 100.0 35 GCAGCGCAAC ................................ AGCTGTCAGCTTGGGCGAGTTGGGCGTCGGTTTCG 2750036 32 100.0 33 GTCGGTTTCG ................................ AATTCACAATCATTGCGGCATTGCCGCCCTGAG 2750101 32 100.0 34 CCGCCCTGAG ................................ CACATTGCTTTTTTGTTTAGCAGGTTTGCATCCA 2750167 32 100.0 34 TTTGCATCCA ................................ ATGTTGAGCGGCGTTCCTCCAGGCTGAATTTTCA 2750233 32 100.0 33 TGAATTTTCA ................................ GATGGTGTCTGCGGATGTGGCCGAGACCGATCC 2750298 32 100.0 35 AGACCGATCC ................................ CCTTCACGTTTGCGCCCTTCGTCAACATCCGATAT 2750365 32 100.0 34 CATCCGATAT ................................ ACCGAGATTTGGTATTGGACAGCTTCATCATTGC 2750431 32 100.0 34 TCATCATTGC ................................ AATGGCGGACAGTTACATCGGTCTGATCTGGGCG 2750497 32 100.0 34 GATCTGGGCG ................................ ATGTCTCTCCCGTCCGCTGTTGTTTTCTCCCCCT 2750563 32 100.0 34 TTCTCCCCCT ................................ GCGTTCCTTTCTATTGGTGGACGGGCAGGGAGTC 2750629 32 100.0 34 GCAGGGAGTC ................................ TCCAGGTCTTTGCCGCAATCGTGACATTTGCCTT 2750695 32 100.0 34 CATTTGCCTT ................................ GAGGCTCGGACTGCTTTCACAGTCCTATCGGGAT 2750761 32 100.0 35 CTATCGGGAT ................................ TTTTTCGATCTTACCTTGCCAAAGGGCGGCAGATT 2750828 32 100.0 36 GCGGCAGATT ................................ CGTAATCAAAAAAGAGCCACAAGTCGCCGGTAGCCA 2750896 32 100.0 36 CCGGTAGCCA ................................ CGTAATCAAAAAAGAGCCACAAGTCGCCGGTAGCCA 2750964 32 100.0 34 CCGGTAGCCA ................................ ATTCCCCGATCCGCAGGCGCAGGCTCGTTATCTG 2751030 32 100.0 33 TCGTTATCTG ................................ ATAAGTCCCTCGGTTTCGGCTGGCTTCATCATA 2751095 32 100.0 34 CTTCATCATA ................................ TCAAAGCTATCAGCGACCTTTGCCCTCATTGCCC 2751161 32 100.0 34 CTCATTGCCC ................................ TAGCGCATCAGGACATCACTGGTTTGATTTGCTA 2751227 32 100.0 36 TGATTTGCTA ................................ GGCAGCCCGGTGGCCACGGTCTTTAGGGGGTGTTGC 2751295 32 100.0 34 GGGGTGTTGC ................................ ACAGGAATACGCATTTTCATACCCTGAACAATGC 2751361 32 100.0 34 TGAACAATGC ................................ TTGCCTTCATTTTTCAGGTTCCAGTATTCCTTAG 2751427 32 100.0 33 TATTCCTTAG ................................ AGCAAGCCGCCTATGTTGGCAGGGGTTATGCCT 2751492 32 100.0 33 GGTTATGCCT ................................ ATAAGTCCCTCGGTTTCGGCTGGCTTCATCATA 2751557 32 100.0 35 CTTCATCATA ................................ TTCTTCGGAAACGCTTGCCGGTTCGGGCTTTGCTC 2751624 32 100.0 34 GGCTTTGCTC ................................ CTGGCGTTAGGGCCGTATCAAAGAGGGTTTAGAT 2751690 32 100.0 34 GGGTTTAGAT ................................ TTTCATCAAGCCCTATTTCACTAACCCAAAAAAA 2751756 32 100.0 34 CCCAAAAAAA ................................ TTAACAACCTCTGCCAGCGTCCGGACATATGCGG 2751822 32 100.0 33 ACATATGCGG ................................ GTTTATAAGATAGTCATCGAAAGCAAACAGGAG 2751887 32 100.0 34 CAAACAGGAG ................................ CTTTGGGAAGGCCAGGACATATAAGCTCCTGAAG 2751953 32 100.0 36 GCTCCTGAAG ................................ TCTGGCCGTTTTGCCCTTGCCGATCTCGATCTCGCC 2752021 32 100.0 35 CGATCTCGCC ................................ ATTGTCAAGAATTATGTGTATTAATTCACCAATCC 2752088 32 100.0 34 TCACCAATCC ................................ ATTTGTGGGTAAGTCGTTTCCTATCAAATTTCCC 2752154 32 100.0 34 CAAATTTCCC ................................ GATGGATTCAATTTATTTTACAGAGCCCTTAAGG 2752220 32 100.0 35 GCCCTTAAGG ................................ ACGGACCCGCTCCCAATCCAGGGTCAGGGTGGGCT 2752287 32 100.0 32 AGGGTGGGCT ................................ CTTGCCTGTTGACTACCGTTGACTACATTTTA 2752351 32 100.0 34 CTACATTTTA ................................ CGATACACCATCGACTTCTATTCCCACGGGCGGG 2752417 32 100.0 34 CACGGGCGGG ................................ GTCCCACTCAATCGTGGAGATATCCGACGCGACC 2752483 32 100.0 33 CGACGCGACC ................................ CATATCGAGTCGTCCTGGGCGGCGAATAAAGAT 2752548 32 100.0 34 GAATAAAGAT ................................ TCTTTCCGGATGTCTGACCTGGGCGGCAAAGACA 2752614 32 100.0 35 GGCAAAGACA ................................ GCGTCCGCAACCTGGGCGATGTCTACGGCCATGAC 2752681 32 100.0 35 CGGCCATGAC ................................ GGTAAGCTTCGATGTTGCTGCTGGCATTAAAGGTC 2752748 32 100.0 35 ATTAAAGGTC ................................ GTGTAACCGGTACCTTCCCCAATCGGTTTTTCCTC 2752815 32 100.0 38 GTTTTTCCTC ................................ GCTACCAGCCGATTGCTCCAGCCGTGGGCGTGCTTGTA 2752885 32 100.0 35 CGTGCTTGTA ................................ CACTCCCGCCACACCGAGTCCCGGCACCACCGAAA 2752952 32 100.0 ACCACCGAAA ................................ TGTTTACATT ========== ====== ====== ====== ========== ================================ 83 32 34 GTTTCAATCCACGCCCCCGCATGGGGGGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [5,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-10.50,-10.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [20,183] Score: 0.18/0.18 # # Final direction: R [0.37,4.95 Confidence: HIGH] >NC_007759 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 601771 35 100.0 40 NNNNNNNNNN ................................... AAAGCATAGCGTCTGCTCCTTAATACGTTTACATTATAAC 601846 35 100.0 37 NNNNNNNNNN ................................... GCCGCTGCCATTCCTGCAAACATCAAAACCATTGCCA 601918 35 100.0 41 NNNNNNNNNN ................................... TTGAACATTAATCCCGCTCCATCTGAATTGTTTTCAAAACA 601994 35 100.0 39 NNNNNNNNNN ................................... TGATACACACCTCTGCAATTATCACACGTGAAATAATTG 602068 35 100.0 36 NNNNNNNNNN ................................... CTGAGCAAAGCCTTACATTCTGTCCGGGTAATACGG 602139 35 100.0 40 NNNNNNNNNN ................................... ACAGTTACGATCAACGGTATTCCAACAGCAATCAAAACAG 602214 35 100.0 40 NNNNNNNNNN ................................... CGTAAATCCTGATTCCCGCTATCTCCCTCACACCCATCTT 602289 35 100.0 39 NNNNNNNNNN ................................... ATACCGCTACAATGGTCGCATGTAAAGTAACCGTTATCG 602363 35 100.0 39 NNNNNNNNNN ................................... GGTAAATCTCCACTCATAAAATTGGAGGAACTTCTATTG 602437 35 100.0 39 NNNNNNNNNN ................................... CTTAATACATCCATTTTAACCTCCTAATCGCTGTTATTT 602511 35 100.0 38 NNNNNNNNNN ................................... GCCTTTATGGTTTGTTATTTGGTTGCCTTGGTTGCCTT 602584 35 100.0 38 NNNNNNNNNN ................................... TTTGCATTGCATCCACCATACGCCCCATTGCTTGCAAC 602657 35 100.0 39 NNNNNNNNNN ................................... TGTGAACTGTGCCAGACTGAAACAAAATTCGATACTTGC 602731 35 100.0 39 NNNNNNNNNN ................................... TGCCTTTGCAGGCGCTACATCTACAGGGTTAACCATTGC 602805 35 100.0 41 NNNNNNNNNN ................................... CAGCAAATTGGCGTTGTGATATTGAATTTTCATGTAACCAT 602881 35 100.0 40 NNNNNNNNNN ................................... TCCTCTGCCGTGTTGACAATATAAATCCGGTCATCAAAAT 602956 35 100.0 41 NNNNNNNNNN ................................... TATGGCTTGTAATTTTGGAAATGGTCGTTGATGAGTTGGAA 603032 35 100.0 40 NNNNNNNNNN ................................... GACCAATCGACAATAGGCTTTTCGATCCAGGGAGCGATGA 603107 35 100.0 39 NNNNNNNNNN ................................... ATCATACACGTCCTCACAATATGTGTATATCCTCTCTTT 603181 35 100.0 38 NNNNNNNNNN ................................... AAGACTCAAGATCAAAAATATATCCTCTGCTCCTTGGT 603254 35 100.0 38 NNNNNNNNNN ................................... CATATTTCCTCCTATCGATACCGATCCGTTACATCCTC 603327 35 100.0 40 NNNNNNNNNN ................................... TTTTCTTGTATCCATTTATTCGGCCCATCTTCTTTATCTT 603402 35 100.0 41 NNNNNNNNNN ................................... TCCACATTCCAGTTCAAAAATCACTTCCCCATCCCATCGAC 603478 35 100.0 37 NNNNNNNNNN ................................... GAATCGGTATAGTCTCATGTGCCATAGCTCTATACCT 603550 35 100.0 38 NNNNNNNNNN ................................... CGCGAGATAGGATATTCAGGAACTCGGAATGATTGCCC 603623 35 100.0 38 NNNNNNNNNN ................................... CGCGAGATAGGATATTCAGGAACTCGGAATGATTGCCC 603696 35 100.0 39 NNNNNNNNNN ................................... TCAGGGATAACCCTTAGAATCCTCCTTTCTTTAGTGAAA 603770 35 100.0 40 NNNNNNNNNN ................................... GAACGCATACGAAACACGAACTGGCTGGCAGGCTGATCAA 603845 35 100.0 41 NNNNNNNNNN ................................... CTCAATACCGAGTTCGTTCAATACCCGCACGGAGTTCATCA 603921 35 100.0 38 NNNNNNNNNN ................................... TATCTATCTGCTTTTCAAATATTCTTTCCCAATTCGTT 603994 35 100.0 40 NNNNNNNNNN ................................... CCTGCATTGACTCGTTTCAATAGGCCGAGGCTCTTGTCCT 604069 35 100.0 39 NNNNNNNNNN ................................... CTTTTCTCCTTTTCTTCTTTTTCTTTTTCGTCTATTTCC 604143 35 100.0 39 NNNNNNNNNN ................................... ATGATAACCGTGAATAGCATTATCATTATCGTCATTATC 604217 35 100.0 39 NNNNNNNNNN ................................... ATGATAACCGTGAATAGCATTATCATTATCGTCATTATC 604291 35 100.0 38 NNNNNNNNNN ................................... TAAAGATGAAATCATGGAATACATCGGCGGAGTTTCGG 604364 35 100.0 38 NNNNNNNNNN ................................... CATCAGCCATAAGGTTGATATCATCCTGAGTACACTCC 604437 35 100.0 37 NNNNNNNNNN ................................... CAATTTTGATAAATCCATTCTATTAAATTCTTTTCGT 604509 35 100.0 37 NNNNNNNNNN ................................... GGAGGGGCGACCGGCGAATTGTACCGGGAAGACAGCA 604581 35 100.0 38 NNNNNNNNNN ................................... TACATTTTAGCACGTTAAAAATGTCGTGGTAAAAAAAA 604654 35 100.0 40 NNNNNNNNNN ................................... CTAACACCCCGGCCTCAATATGTTTTGTAAATGTGCTTTT 604729 35 100.0 41 NNNNNNNNNN ................................... TCCCCGAAGCCGGAAATTAATTTCATTTTCTTTACAACATT 604805 35 100.0 35 NNNNNNNNNN ................................... TCGTAATGCCTATTCCCAACGGCCTCCAAAGGTGC 604875 35 100.0 37 NNNNNNNNNN ................................... TAAAACTTCCCGACTTCAATGTTCATCATTCCCCCTC 604947 35 100.0 36 NNNNNNNNNN ................................... GTGCTGTCCGACGCGCAGATCGTAGTCATATACCCA 605018 35 100.0 41 NNNNNNNNNN ................................... AGCATTAAAGTTTTCCCCGAACCAGTGGCAGAAACCGCCAC 605094 35 100.0 39 NNNNNNNNNN ................................... GGTAATTCCCGGCAATAATATTCATTGCCCTGAGCGCAT 605168 35 100.0 36 NNNNNNNNNN ................................... TTTGCGGCTCTTTCGTTCTCCTGTTTCTTTTCACCT 605239 35 100.0 39 NNNNNNNNNN ................................... AATACCTGGGTATCGCCTTTATCGAAACGCTTCAGTATT 605313 35 100.0 40 NNNNNNNNNN ................................... ATGCGCTCCTGATTGCGTTCAATTTGTTCAAGGCGTTCGT 605388 35 100.0 37 NNNNNNNNNN ................................... AGGGGCAATTCTGGGGATGCACTTTCGAGGTTGCCCA 605460 35 100.0 40 NNNNNNNNNN ................................... TTAATGTCTGCGCATTCAACATGCAAGTTTGGGAACCATC 605535 35 100.0 40 NNNNNNNNNN ................................... CTGGTTTGCAAGGGCTTTGTAGTTTTTCATGATCGCCTCC 605610 35 100.0 39 NNNNNNNNNN ................................... CAAAAACAGCAACCGTGCTTTTCCTTTTGCTTCTCATAG 605684 35 100.0 38 NNNNNNNNNN ................................... CCACAAAATCGTGTTCATCAACATGATCCTTGTGATTT 605757 35 100.0 39 NNNNNNNNNN ................................... GCCGCATCGCTCACAGCGATATCCGGCTTCTTTCAATGC 605831 35 100.0 41 NNNNNNNNNN ................................... TCATAGGTTGTACTGATAGGTTTGTTCAGTGCTTGCATTGC 605907 35 100.0 40 NNNNNNNNNN ................................... GATTGATCCCATTTGACCGTTTTCGGTATTGTGATAACCA 605982 35 100.0 39 NNNNNNNNNN ................................... TTTCTTCCCTCCCCCTGCTTTTGCGGGTGACTGCGTTTT 606056 35 100.0 41 NNNNNNNNNN ................................... ATGCCAGTGTATCAGCATCCAAAGTATCCCTCACCCTGACC 606132 35 100.0 39 NNNNNNNNNN ................................... CCACGCCCATGATTTTTATCATGTTTTTTGCGTCTCTGA 606206 35 100.0 40 NNNNNNNNNN ................................... TCTTAAGGATCGTGTTATAGTAATCAGCCGGGTTGTCGTG 606281 35 100.0 37 NNNNNNNNNN ................................... AATGGATTCCCAGAGAAAAAGCGAAATCTTTCCTCGG 606353 35 100.0 39 NNNNNNNNNN ................................... GTCTCAACATGGCGTTAAACTCTGACGTTAGCATGGTTA 606427 35 100.0 40 NNNNNNNNNN ................................... CGCAGTCATTCTCTAATCTATCGTTTTCTTCCCTTAATCG 606502 35 100.0 40 NNNNNNNNNN ................................... CGCAGTCATTCTCTAATCTATCGTTTTCTTCCCTTAATCG 606577 35 100.0 40 NNNNNNNNNN ................................... CGCAGTCATTCTCTAATCTATCGTTTTCTTCCCTTAATCG 606652 35 100.0 41 NNNNNNNNNN ................................... CAGCTTGTTCGGCTGCTTGTTCGGACAAGTATTTCTTTTTC 606728 35 100.0 39 NNNNNNNNNN ................................... GCTCTTTCCCGTGCGTATTGGTTGTGTCTGCGTCCTTTG 606802 35 100.0 40 NNNNNNNNNN ................................... GCGTGATCGTGACTTCTCCTTTGGATAGCTTGGTAAGCAA 606877 35 100.0 42 NNNNNNNNNN ................................... AACTCAGAGATAACTTCATTGATTGCTTCATTATTCGTAATC 606954 35 100.0 41 NNNNNNNNNN ................................... ACGCGGCATGTGAACATTAAGGGGCAGTTCCAGGGTCATCT 607030 35 100.0 40 NNNNNNNNNN ................................... GAACCCATTAATAAGTTTAAAAAGCTGCCTTGCCCTCTCT 607105 35 100.0 39 NNNNNNNNNN ................................... CGCAGAGAGGCTGTTAATTTAAAAAGGCTGTTGATAATT 607179 35 100.0 40 NNNNNNNNNN ................................... TCAGTAATCCGGGGCTGGGGAATGTGACTTGCCTCCGCCC 607254 35 100.0 42 NNNNNNNNNN ................................... GGTTTCATCCTGTCCTCCGTTATCGGTATTGATCGGTTACGT 607331 35 100.0 39 NNNNNNNNNN ................................... ACTAAATTCCGTCCACGTGTAAGCAGATTTTTAGGAATA 607405 35 100.0 38 NNNNNNNNNN ................................... CAACGTATCCGCTGTGCTCATTCATCCAGGCGATGACT 607478 35 100.0 38 NNNNNNNNNN ................................... CAACGTATCCGCTGTGCTCATTCATCCAGGCGATGACT 607551 35 100.0 1 NNNNNNNNNN ................................... NNNNNNNNNN ========== ====== ====== ====== ========== =================================== 79 35 39 GACAGAATTGACCTGATTTACGAAGGGATTGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.29%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [265,162] Score: 0/0.18 # # Final direction: F [0.37,0 Confidence: MEDIUM] >NC_007760 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================== ====== 4605448 22 100.0 30 NNNNNNNNNN ...................... CCGGGTCGGGGCCTCGGGGTCGGGGCCTCG 4605500 22 100.0 34 NNNNNNNNNN ...................... CGGCAGGGCACCGCGGCGGCGCCCTCACCTAGCC 4605556 22 100.0 1 NNNNNNNNNN ...................... NNNNNNNNNN ========== ====== ====== ====== ========== ====================== 3 22 32 AATTACTCTGGGTCGGGGCCTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [31.7-33.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [254,311] Score: 0/0.18 # # Final direction: R [0,0.37 Confidence: MEDIUM] >NC_007775 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1139963 37 100.0 40 GATCCCTATA ..................................... CTGTGCAAGCAGCCATTCGGGGGTCCGTGCTCCGAGAGCT 1140040 37 100.0 38 TCCGAGAGCT ..................................... AACGGTTGGCTAATCCGGGAAACCGGATGGGAAATAGG 1140115 37 100.0 37 GGGAAATAGG ..................................... CAAATCCAGAACCAGGTGCTTATAGCACTTGTAAAGG 1140189 37 100.0 37 CTTGTAAAGG ..................................... GGCGAAAGCCTGCGGATTCCGCTTGCTCCCCGCGTAC 1140263 37 100.0 39 CCCCGCGTAC ..................................... CTGTAATAAAACTCGGGAAGCGGCTCCGACTATACCGGG 1140339 37 97.3 38 CTATACCGGG .....G............................... TCGGGGCACCCCCTCTGGAAATGTAGATGCCAGTGTGG 1140414 37 100.0 39 GCCAGTGTGG ..................................... TCATCGACGACTAACTTTAAGGAAGGCTACCTTATTGGT 1140490 37 100.0 39 CCTTATTGGT ..................................... TCATCGACGACTAACTTTAAGGAAGGCTACCTTATTGGT 1140566 37 100.0 CCTTATTGGT ..................................... CCTACCCCCG ========== ====== ====== ====== ========== ===================================== 9 37 38 GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [8,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.70,-9.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [40.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [60,337] Score: 0.18/0.18 # # Final direction: R [0.41,0.82 Confidence: MEDIUM] >NC_007775 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1260140 36 100.0 36 TAGGGGTAGA .................................... TATAACGCTCGGCAGATCGCTGGGCGTTGAGAGCCA 1260212 36 100.0 41 TTGAGAGCCA .................................... GCAATCGGGCGAGCGTTTGGATAGTCGGCAACTTCGCTGTA 1260289 36 100.0 43 CTTCGCTGTA .................................... TTTGCCGGTAGCTTTGGACTCATGGTTTCCTCCTTTCTGTAGG 1260368 36 100.0 38 TTTCTGTAGG .................................... TTTAGCCATCCATCGTATTCCTCAGGAATACTAGGGCG 1260442 36 97.2 41 TACTAGGGCG .....................T.............. CTCAACGATGGCATAACGGAGCTCATAGTAATCTCCGCAAT 1260519 36 100.0 TCTCCGCAAT .................................... GCCCAGGGAGTTTAAGAACTCCCGGGCTTGCTTTAGCCACGCGTCCTCAA ========== ====== ====== ====== ========== ==================================== 6 36 39 GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [8,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.70,-4.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [45.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [311,156] Score: 0/0.18 # # Final direction: F [1.05,0 Confidence: HIGH] >NC_007775 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================= ====== 2328046 33 72.7 55 GGCTGGAGAA ........................--------- GAAGGGGGAACAAGCAAACAACTAACTTTCGCAAGAACTTGGCGTTCATAGTAAT 2328134 33 100.0 44 TCATAGTAAT ................................. AACTCCCAAGGGTACTACAGTTACTATTTCGCAGTTGCGCAAGG 2328211 33 100.0 40 TTGCGCAAGG ................................. AACTTTGCTGGGTCTATCGAAACAGATTCACTGGATAAAC 2328284 33 100.0 40 CTGGATAAAC ................................. AACTGTATCTGGGCATACGGTGGGTGGTACATTTCGGAGC 2328357 33 100.0 40 ATTTCGGAGC ................................. AACCTCATAGTGCGGGATGTAGGCGGTAAGCGCTTCTACT 2328430 33 100.0 43 CGCTTCTACT ................................. AACCCTTTTTTAACAACTTCCTTAACTAGAGCAGATGTTTACA 2328506 33 100.0 41 GATGTTTACA ................................. AACAGCATTACTGAGCTGCGCAAAGCGCAAAAGCGTGAGCG 2328580 33 100.0 40 AGCGTGAGCG ................................. AACTCTAAACAAAGGAGTCCGTATGAACACATTCAAGATT 2328653 33 100.0 41 ATTCAAGATT ................................. AACTGATGGTATACCCAGTCCTGACTGGGCTACATCCTGCC 2328727 33 100.0 38 ACATCCTGCC ................................. AACTTCTGGCGGGATCACCCACACACCCCTGTACTACA 2328798 33 100.0 43 CTGTACTACA ................................. AACCCGATTCGTTCGCAAGCGACTGGTTACTAACAGTCTTTAC 2328874 33 100.0 46 CAGTCTTTAC ................................. AACATTAAGTATAAGACAGAGCAGCATCCTATTTTTCGCACTAATA 2328953 33 100.0 38 CGCACTAATA ................................. AACTCGACACGGCCGCCACGAATAAACCAAGGACTCAG 2329024 33 100.0 43 AAGGACTCAG ................................. AACTTACCGTCCAGTACATATACATCCCGCACTTCAAGAAGAG 2329100 33 100.0 42 TCAAGAAGAG ................................. AACATCCTGCTGATATGGTAGAAGGCTTGGTAGCTCCTCAAT 2329175 33 100.0 GCTCCTCAAT ................................. AACGGCAAAA ========== ====== ====== ====== ========== ================================= 16 33 42 GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [43.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [86,270] Score: 0.18/0.18 # # Final direction: R [0.27,1.33 Confidence: HIGH] >NC_007775 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================================== ====== 2557790 38 100.0 36 TCTCAAAGGG ...................................... GCAGTGATGCGCAAGGCGCGCCAAGCTGCCAAAGAT 2557864 38 97.4 41 TGCCAAAGAT ....................................G. GTAAAATGAATCGCGCTTTCCTCCGTCTGTTGGTCAAGCGT 2557943 38 97.4 36 GGTCAAGCGT ....................................C. GAGAATACTCCAGGGGGAGCAACCCCTAGCCTAATC 2558017 38 100.0 34 TAGCCTAATC ...................................... CGTACCTCGTTTAAGGGAGTTTGTGCCCATGAAC 2558089 38 97.4 GCCCATGAAC .....................................A CTACAACGAC ========== ====== ====== ====== ========== ====================================== 5 38 36 GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAACTT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [8,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-9.60,-10.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [38.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [320,201] Score: 0/0.18 # # Final direction: R [0.41,1.01 Confidence: MEDIUM] >NC_007775 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 733237 28 100.0 35 CTCATAGATT ............................ GGACGGATCCCTTGCCGGGTCAGGGCCCTCCCTTC 733300 28 100.0 35 CCCTCCCTTC ............................ TGAAGTCCTGCCGTCCCGCGGGCCGGGCCGACTTC 733363 28 100.0 36 GGCCGACTTC ............................ GTACGCTCCCACGATCTCCAAGCCTGCCGCCTTCGC 733427 28 100.0 36 CCGCCTTCGC ............................ TCCAGTGCCACCGCTATTGCGGGGACTAGCCAGGTC 733491 28 100.0 35 TAGCCAGGTC ............................ GACTCTTTGTCCGTCACTCCAACGTAGAGGATTAC 733554 28 100.0 36 AGAGGATTAC ............................ GCTATTCGGTGGGCTTCCCGCTCAAGTTGTGCTTCC 733618 28 100.0 36 TTGTGCTTCC ............................ CCGGTGAACTCCCGCAGCTTGGGCGCCCACTTGTTC 733682 28 100.0 CCACTTGTTC ............................ CCTTCCATTT ========== ====== ====== ====== ========== ============================ 8 28 35 GGTTCACCCCCACGGGTGTGGGGACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-10.90,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [48.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [131,21] Score: 0.18/0.18 # # Final direction: F [0.55,0.27 Confidence: MEDIUM] >NC_007775 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 889207 37 100.0 35 NNNNNNNNNN AGAGG.A.G.T.....A....G.......A....... CTCACTTCTCTTTGCTCATTACTCGCTTCTCTCTA 889279 37 100.0 38 NNNNNNNNNN ..................................... GTTACTCACTGTAGAACACGAATTGCGTGATGAAAACT 889354 37 100.0 38 NNNNNNNNNN ..................................... CATAAACCAAGTATGCAGCGTAGTCTAGATACTGTTCA 889429 37 100.0 39 NNNNNNNNNN ..................................... AGTAGAGCAGGATGGCGGCAAATTCGAGAAATGTGTGAA 889505 37 100.0 42 NNNNNNNNNN ..................................... TCTAACTAGAGTAATACCTGGGTTTAACTGTGAACCAGGAGA 889584 37 100.0 36 NNNNNNNNNN ..................................... GACTGGGCAGTGGCATGCCTCCTGAACTAACCTAAC 889657 37 100.0 37 NNNNNNNNNN ..................................... GCGGATTTCATGTTGTGCCCGACAGTAGCCTTACTTT 889731 37 100.0 38 NNNNNNNNNN ..................................... ACGATCCAGTGGGGACGTGGACGCTGGACCATTAACTG 889806 37 100.0 38 NNNNNNNNNN ..................................... GGCAAAGGTATTTACTCCTTAGACTAAGTAAAAGGGCA 889881 37 100.0 39 NNNNNNNNNN ..................................... CGGACAAAATTGTCAAAGGACAAGCCAAGACTCTGAAGC 889957 37 100.0 38 NNNNNNNNNN ..................................... GGGTGGATTCCGACTGAAACCGGTTTGGCTACCCGAGT 890032 37 100.0 43 NNNNNNNNNN ..................................... GGGGCACAGATGTCGTGTTCTACGATCTGGAAACAGTCGTAGA 890112 37 100.0 34 NNNNNNNNNN ..................................... AACAAAGGCCTTCGTGGTATGGTTAAACTTCGCA 890183 37 100.0 36 NNNNNNNNNN ..................................... TGTAGATAAACCGGACACCGCTTTTGGTGCGTTGGA 890256 37 100.0 40 NNNNNNNNNN ..................................... AACGGGTTCTCCCTCAAGGAGGCGCCCGCCATACTGAGAG 890333 37 100.0 39 NNNNNNNNNN ..................................... TTTTTAGAGGGGCAGAGTTTGTATAGACTGCCTAGGAGG 890409 37 100.0 38 NNNNNNNNNN ..................................... AACCATCGCTGGATCGGGGTTAATTCCCTCACTAATGC 890484 37 100.0 40 NNNNNNNNNN ..................................... GGGGCTAACCAAACTGGGTTAGCCTAGATCATCTGCAAAA 890561 37 100.0 37 NNNNNNNNNN ..................................... GAGGGCCGTCTCCTGACTGCCGGAACCTTCTTGGTGA 890635 37 100.0 41 NNNNNNNNNN ..................................... AGTAATCTGAGGGTTGGGACAAGAGGTTTTATATAACTCAG 890713 37 100.0 36 NNNNNNNNNN ..................................... TTCCAGTAGTAGTTGCGACCCCCGATTTCCCTCACT 890786 37 100.0 37 NNNNNNNNNN ..................................... AAATTTATCTTTAAAGACCCGAACGAGTATATGTTCT 890860 37 100.0 36 NNNNNNNNNN ..................................... CTAACCTAGATCTCGATATCACAAGTGAGGTAGAAC 890933 37 100.0 42 NNNNNNNNNN ..................................... CTACCTATACGGTAGTAAAAACCTCTACATCCGTCACTGCTA 891012 37 100.0 41 NNNNNNNNNN ..................................... TGTGGACTAGTGACGGTGTTGGCGGTCGCAAGCTAACCTTC 891090 37 100.0 39 NNNNNNNNNN ..................................... TCGGCTAGAAACCGAGTACAAAGCCGCACTTGCAAAACA 891166 37 100.0 37 NNNNNNNNNN ..................................... GTTCGAACCACCAACTTGGGTGGTTCGACAATAACTT 891240 37 100.0 38 NNNNNNNNNN ..................................... TTGTTATGCAACTACTGGAACCGGTGTTCACCGTCATT 891315 37 100.0 39 NNNNNNNNNN ..................................... TCCATGTTGTTGATTAACCACATGACCTCATTTTGGGTC 891391 37 100.0 38 NNNNNNNNNN ..................................... GTTAAGAATGCCCTAAAGTTGTCCAGTGATCAACTGGC 891466 37 100.0 41 NNNNNNNNNN ..................................... AGTGAAAACCAGGATCCAAAAGGCGAAAGCCTGCGGGTTCT 891544 37 100.0 38 NNNNNNNNNN ..................................... GAATGTCAGTCTATACGATGAATGGAAAGACACTCAAG 891619 37 100.0 44 NNNNNNNNNN ..................................... GCCATTGAGCGGCAGCGGGCTGAACAACAAGCCCGTGTGGAGAA 891700 37 100.0 36 NNNNNNNNNN ..................................... TTGCTAAGCAACGAATAAACCTCCCCCACCCACACA 891773 37 100.0 39 NNNNNNNNNN ..................................... GTGAGACACAATCGCTGCAGCCTGTGGGTTCAACTTCAT 891849 37 100.0 41 NNNNNNNNNN ..................................... ACCGTTTTATTATAGCCCACGGTGCCGGGGCTCCGCAAGAC 891927 37 100.0 36 NNNNNNNNNN ..................................... TCGAAGGCCAATTTCGTAGAGTACACGCCGAAAGGC 892000 37 100.0 40 NNNNNNNNNN ..................................... TGTTGGGGGAGGGACTACCTTAGAGGGTTCCCCCCATCAC 892077 37 100.0 36 NNNNNNNNNN ..................................... CTGGAAATTCTCGCTACTGCAGGGCGAGAAAGAAGC 892150 37 100.0 36 NNNNNNNNNN ..................................... AAGACCTCCCAGATCGCCGTTGCAGTGCGCTCCAAA 892223 37 100.0 38 NNNNNNNNNN ..................................... CTATTATAATCCGTATCACAAGGGGGATTTTATTCAGT 892298 37 100.0 1 NNNNNNNNNN ..................................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 42 37 38 GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [8,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.70,-9.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [285,276] Score: 0/0.18 # # Final direction: R [0.27,0.78 Confidence: MEDIUM] >NC_007776 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1428062 37 100.0 38 CGTAGCTCAG ..................................... GAGCCATACTTCGACGGTGAAAAGGTGTACTGTAACGG 1428137 37 100.0 39 ACTGTAACGG ..................................... AGGAAGTTTAACCGTAAGGTTGCTAAATCCGCAACTGTG 1428213 37 100.0 44 CGCAACTGTG ..................................... TCATTACCTTAACGTGGAGCGGGGTTTAGGTAGCCGTGGCGATA 1428294 37 100.0 43 CGTGGCGATA ..................................... TTAGCGTGCTACCCGCCACTGCCCACGCTGGTGGGTATTTTAT 1428374 37 100.0 38 GGTATTTTAT ..................................... GTACGCCCGAGAGGGGTGCAAAAAGGGCGGTATGAGTA 1428449 37 100.0 42 GGTATGAGTA ..................................... GTGTTCACCTGTCGAAGCCGTTCGGTCTGCGGGAAGTCTCCC 1428528 37 100.0 37 GAAGTCTCCC ..................................... GACAGCAATATTCTGTACCAACAAATGGAAAGAACAT 1428602 37 100.0 36 GAAAGAACAT ..................................... TGAACTAGTCTTATATAAGGAGTGCCTACCTCAGGC 1428675 37 100.0 37 TACCTCAGGC ..................................... GCCTACCTCAGGCACTCCTTTATTTTTTAGAGCAGGT 1428749 37 100.0 43 TAGAGCAGGT ..................................... AGCGAAGGAGCGGATCCGCAAGGCGAAAGCCCGCGGATTCCGC 1428829 37 100.0 46 CGGATTCCGC ..................................... CTCGGTGTACCAGGTTACTGTCTTTCGGCACCTAGAAACCGGAGCC 1428912 37 100.0 38 AACCGGAGCC ..................................... ATGGTGTTGACGGTAGCGGTGGTCGCTGGTACGATAGG 1428987 37 100.0 41 GTACGATAGG ..................................... GTCCGGTCGGCGGCATTGGGGATCCACGCGACGTCGCGTCT 1429065 37 100.0 37 CGTCGCGTCT ..................................... GGGTGGAGGTAAGTTTCTGTAGAGTTTACCGTTTACT 1429139 37 100.0 34 ACCGTTTACT ..................................... CCGGTTCGCCGCCAAGCAACCTCACTGTGGAGCA 1429210 37 100.0 CTGTGGAGCA ..................................... CCTACCCCCG ========== ====== ====== ====== ========== ===================================== 16 37 39 GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [8,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.70,-9.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [102,337] Score: 0.18/0.18 # # Final direction: R [0,0.55 Confidence: HIGH] >NC_007779 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2876357 29 100.0 32 NNNNNNNNNN ................AT.........A. CAGCGTCAGGCGTGAAATCTCACCGTCGTTGC 2876418 29 100.0 32 NNNNNNNNNN ...........T................. TCGGTTCAGGCGTTGCAAACCTGGCTACCGGG 2876479 29 100.0 32 NNNNNNNNNN ...............AA............ GTAGTCCATCATTCCACCTATGTCTGAACTCC 2876540 29 100.0 32 NNNNNNNNNN ............................. CCGGGGGATAATGTTTACGGTCATGCGCCCCC 2876601 29 100.0 32 NNNNNNNNNN ............................. TGGGCGGCTTGCCTTGCAGCCAGCTCCAGCAG 2876662 29 100.0 32 NNNNNNNNNN ............................. AAGCTGGCTGGCAATCTCTTTCGGGGTGAGTC 2876723 29 100.0 32 NNNNNNNNNN ............................. TAGTTTCCGTATCTCCGGATTTATAAAGCTGA 2876784 29 100.0 33 NNNNNNNNNN ............................. GCAGGCGGCGACGCGCAGGGTATGCGCGATTCG 2876846 29 100.0 33 NNNNNNNNNN ............................. GCGACCGCTCAGAAATTCCAGACCCGATCCAAA 2876908 29 100.0 32 NNNNNNNNNN ............................. TCAACATTATCAATTACAACCGACAGGGAGCC 2876969 29 100.0 32 NNNNNNNNNN ............................. AGCGTGTTCGGCATCACCTTTGGCTTCGGCTG 2877030 29 100.0 32 NNNNNNNNNN ............................. TGCGTGAGCGTATCGCCGCGCGTCTGCGAAAG 2877091 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 13 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,6] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [41.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [84,107] Score: 0/0.18 # # Final direction: R [0,1.92 Confidence: HIGH] >NC_007779 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2902670 28 96.4 33 GTTATATGGT ..........................T. GACAGAACGGCCTCAGTAGTCTCGTCAGGCTCC 2902731 28 100.0 33 GTCAGGCTCC ............................ CTGTTTTCGCAAATCTATGGACTATTGCTATTC 2902792 28 100.0 33 ATTGCTATTC ............................ GGGCGCACGGAATACAAAGCCGTGTATCTGCTC 2902853 28 100.0 33 GTATCTGCTC ............................ TGGCTCTGCAACAGCAGCACCCATGACCACGTC 2902914 28 100.0 33 TGACCACGTC ............................ GAAATGCTGGTGAGCGTTAATGCCGCAAACACA 2902975 28 100.0 33 CGCAAACACA ............................ ATTACGCCTTTTTGCGATTGCCCGGTTTTTGCC 2903036 28 100.0 GGTTTTTGCC ............................ TCTAAACATA ========== ====== ====== ====== ========== ============================ 7 28 33 GGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [641,341] Score: 0/0.18 # # Final direction: R [0,1.65 Confidence: HIGH] >NC_007776 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 156596 36 100.0 36 TAGGGGTAGA .................................... GCTTACGTGGCGTGGCATAGAAGTACAACTCATCAG 156668 36 100.0 41 AACTCATCAG .................................... GCTTTTATTGCAGCGTGTGAGAATAGCAGGTATCATGGTAA 156745 36 100.0 39 ATCATGGTAA .................................... CCCTGGCCAGAGCTATCGAGTTCACCCGCTGGCTGCAGA 156820 36 100.0 36 TGGCTGCAGA .................................... TTGCCGGGGAAAATGTAGGCGAACGCCATCAGGGCC 156892 36 100.0 39 CATCAGGGCC .................................... TTTTGGGCTCTCGGGTAATCATGACTACCCCGTCTAACT 156967 36 100.0 40 CCGTCTAACT .................................... TTTACCAATAGTACCTACTGGTCTAGATTGTTTACCCCAA 157043 36 100.0 36 TTTACCCCAA .................................... GCTATCCAGCAAAGTTACCAGTTTCTCCATTTCTTC 157115 36 100.0 37 CCATTTCTTC .................................... AAGATCTGCTTCTCTGCACCACTAGCTCGCTTGGCTG 157188 36 100.0 39 CGCTTGGCTG .................................... TCATTGTTTCCCCCTTTCATGCGTGCGTGTGGATAAGTT 157263 36 100.0 43 TGGATAAGTT .................................... GCCCAATATAAATGCCTCTGCTAAAGCCCTCGACTTTGCCATT 157342 36 100.0 40 CTTTGCCATT .................................... AGATGGTGGTGAACCTTGCATGGATCCGCAGTGAGGTTAA 157418 36 100.0 38 GTGAGGTTAA .................................... TTGGCAATTAGCAAGTGAACCAATTCAGGATGAACATC 157492 36 100.0 40 GATGAACATC .................................... TACCAAACTATCGGAAGAGGGGAGGGATGGCAGTAGTTAG 157568 36 100.0 35 CAGTAGTTAG .................................... AGAACTACCTCTGGACTAGCTTCTTTGGTTGCTTT 157639 36 94.4 38 TGGTTGCTTT ...........................G.C...... CAGAAGACGAAGTCTAGAAACAAAACGAGAGGAGTGTA 157713 36 100.0 37 GAGGAGTGTA .................................... TCTTGGTACTCGATCTCGGCCCCTTCTAGCCCATCTG 157786 36 100.0 45 AGCCCATCTG .................................... CTTTCTCCGAATGTCCTTTCGGACTTGCGCGTTAAAGCGCTTACG 157867 36 100.0 36 AGCGCTTACG .................................... TGTCTCTGAAATGTTGAAGAATCAGAGACTTTCCAG 157939 36 100.0 39 GACTTTCCAG .................................... AAGGAACCGTCGAAGCCGGCGAACATCTCGATTTCGTCC 158014 36 100.0 41 GATTTCGTCC .................................... CCCTCTTGAACGGTCTGCGAGCTGCCGCTCGTGTGGAGAGC 158091 36 100.0 47 TGTGGAGAGC .................................... AGGTGAACTGGTCTTTTTCTCTCACCTTGTAGGTGAGGTTGCTTGTT 158174 36 97.2 37 GTTGCTTGTT ..C................................. GTTGCATTCTTGATTGGTCCCAGAGGAGTATCCTGCC 158247 36 100.0 42 GTATCCTGCC .................................... TACGTTGAATCTCAGGACGTTGAAACTCTTTACATATACGAT 158325 36 100.0 40 CATATACGAT .................................... TTTGACACTAAACACTCGCGGATAAACCGCATGGCCTGCA 158401 36 100.0 39 ATGGCCTGCA .................................... AAGGGAGGAGTCTGTTATGAACGTTATGAAGTTTATCGG 158476 36 100.0 43 AGTTTATCGG .................................... ACGCGCACGGCGTTTTGCACGATGCGTAAGCATAACCAACCTC 158555 36 100.0 37 AACCAACCTC .................................... TGCCGAACACGGCCTGGTAGCAGTTTTCTGCTACTTC 158628 36 100.0 37 CTGCTACTTC .................................... TTCCCTCAGGCTATTGCTAACCAGACGTGCCCGAACA 158701 36 100.0 37 TGCCCGAACA .................................... AGCATCTAGCCAGCTCACTTTTGCGAGTATCCGGGCA 158774 36 100.0 33 TATCCGGGCA .................................... TAAGCTTCTTGGTCCCTGGATCTACTACTCCAA 158843 36 100.0 41 ACTACTCCAA .................................... AATCCAGATAATTTCGTTATTCTCGTTGATTGCATACAACG 158920 36 100.0 39 GCATACAACG .................................... AACCAGTCCTGGCATTCGCAGGTGAACTGGTCTTTTTCC 158995 36 100.0 37 GTCTTTTTCC .................................... ACCAAAAGCTCCCTGGCACTTTGCCGGCGAAACTCGA 159068 36 100.0 37 CGAAACTCGA .................................... CGCAACTCCAAGACAATCTCATACAGGTCATCGTAAA 159141 36 97.2 TCATCGTAAA ....T............................... AACTTGTTGG ========== ====== ====== ====== ========== ==================================== 35 36 38 GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [8,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.70,-4.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [45.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [240,75] Score: 0.18/0.18 # # Final direction: F [0.96,0.27 Confidence: MEDIUM] >NC_007776 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2016367 36 100.0 36 TAGGGGTGGA .................................... GCAATTGCAGGGGTAGAACACCCCCGCATCGTGGAT 2016439 36 100.0 38 CATCGTGGAT .................................... TTGTTCTTTGGTATACTTGGCGTCTAAGTCACTGAGGT 2016513 36 100.0 39 TCACTGAGGT .................................... AGTCTTACCCTCCACCGACTGGTGGTTCTGCTCGCCGAA 2016588 36 100.0 40 GCTCGCCGAA .................................... ATCCTGGACCCGGAATACGACGACGAGCCCGTCATTTTTG 2016664 36 100.0 39 GTCATTTTTG .................................... GTAAATCTTTGGGCTCCAAAGTGCCCCCATTACCCACCC 2016739 36 100.0 39 TTACCCACCC .................................... GTAGAGCTATTAAAGTAACAGCTACAACCTCTCCTGGAA 2016814 36 100.0 41 TCTCCTGGAA .................................... CCTTGATTACGGCCTCGATTTGGCTAACCCAACGACGTGCA 2016891 36 100.0 38 ACGACGTGCA .................................... AAAATATAGGTATGTCAATATAGATACAACCATTTGAA 2016965 36 100.0 42 ACCATTTGAA .................................... ATGAGGTGTATAGGCCAAACTCGTTCGATCTATCCTCGCGGG 2017043 36 100.0 40 TCCTCGCGGG .................................... TACCACAAGGTGTATACCAATGAAGTAGAGTACCTCGAGC 2017119 36 100.0 38 TACCTCGAGC .................................... ACAAGACATGACTAGCCTCCAAAGGAGTAGATTTTCAA 2017193 36 100.0 41 AGATTTTCAA .................................... ACTTTTAAAACTTTTTTAAAAGATCATCTTAGCTGACCCTT 2017270 36 100.0 41 GCTGACCCTT .................................... CTCTAAGTGCAACCAACTTGCTATATTCCCGTTGTAGGTCT 2017347 36 100.0 43 TTGTAGGTCT .................................... ACTGTTCCAAATCAGGAACGTAAAACGAGACGGAAATGTATCC 2017426 36 100.0 41 AAATGTATCC .................................... TCACCGAGGTTTGAAGATTGGTGTCTCGGTTATTCAGACAG 2017503 36 100.0 36 ATTCAGACAG .................................... TCATCGGTCTCACGCAGACTATTGGTAACCAGCCGT 2017575 36 100.0 37 AACCAGCCGT .................................... CTCAAGGGCGGCTTTATAGCCGTTTCTTTCTACATCC 2017648 36 100.0 40 TTCTACATCC .................................... AGCCAGCTCTTAGCCAACTGAATTTGTTTGTCATTGAGTT 2017724 36 100.0 38 TCATTGAGTT .................................... CATTGCACAAAGCCCCCGGCGGAGAAGATTTGCATCGC 2017798 36 100.0 38 TTTGCATCGC .................................... TAGATTAGCTGGACCATCCGGAGAGCTTCCCGGATGGT 2017872 36 100.0 36 CCCGGATGGT .................................... AGGATGACTTTGGAGAAATAGCTCAGCTATTTCCAT 2017944 36 100.0 43 CTATTTCCAT .................................... TGTACTACAGTCCTGACAAAGGGCTGTACGAAGGGCCAACGGT 2018023 36 100.0 37 GGCCAACGGT .................................... TTTTTGAAGGAACAGCCAAACCTACAGTGAATTTGCA 2018096 36 100.0 39 TGAATTTGCA .................................... GACGGATCCCTCGTCTCTATATTCTTCCAGCTCTTCTAA 2018171 36 100.0 35 GCTCTTCTAA .................................... TTGTTGTCTTGGTTGATCTGGAAAAGTAAGAGGGT 2018242 36 100.0 45 GTAAGAGGGT .................................... GTTAGTCCCTGAATAAGGGAGGAGGATGGCATGAATGCAGCTCTA 2018323 36 100.0 38 TGCAGCTCTA .................................... TAACGTGTTGAAAGCCGGATGAATCTCCTTCTTCAACA 2018397 36 100.0 36 TTCTTCAACA .................................... ACGAGTACGATACGTTCCATAACAAACCTCCCTTTC 2018469 36 100.0 43 CCTCCCTTTC .................................... GATCAAGTCTAACCCAATTCGGGTAGACCGACTGTGTTGCAAG 2018548 36 100.0 38 GTGTTGCAAG .................................... TTGGGGATTAGGATCTTCCCTTCCAGGAAGACTTTTTT 2018622 36 94.4 AGACTTTTTT .....................T.............A GAGAAAATC ========== ====== ====== ====== ========== ==================================== 31 36 39 GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [8,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.70,-4.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [41.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [273,1210] Score: 0.18/0.18 # # Final direction: F [0.78,0.45 Confidence: LOW] >NC_007776 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 515421 36 100.0 40 GCCGTACTGC .................................... CAAGATCCCGCAAAAGCGCGCATCTCTCGGCACGAATGAT 515497 36 100.0 36 CACGAATGAT .................................... TACATACTACTGGATATACGGACACCGCCGTGTAAG 515569 36 100.0 37 GCCGTGTAAG .................................... TTGGATCCAGCAAAATCCGCAAAACGGATTGACTAGA 515642 36 100.0 38 ATTGACTAGA .................................... TGGAATGCCAGTGTCATGCTCTGGCAACGTAGTTTTGG 515716 36 100.0 44 GTAGTTTTGG .................................... TCCTTCACTGACCATACGGTCAGCTCACGCAACACCGACTCCCG 515796 36 100.0 44 CCGACTCCCG .................................... CTCCGTCTGAGTCAACCGAATACCGCTATAGTCCTTATTCGGGG 515876 36 100.0 36 TTATTCGGGG .................................... AGGTTCAGTCTTTCCCTGCCTTAGGAGGAAACTATG 515948 36 100.0 40 GGAAACTATG .................................... AGCTCACTGATATCCAGCGCGAGCAAATTCGTGCGGCGAA 516024 36 100.0 42 GTGCGGCGAA .................................... GCTCGACAACCTCACATGGGAAGCAATTCCCGGGGGAGTGGG 516102 36 100.0 38 GGGGAGTGGG .................................... GCTACCCTCGTGCGTACACAAAAGCCGCCCATTTTGGC 516176 36 100.0 42 CCATTTTGGC .................................... TCGGGCTAGAACAGGCAACGGAGGAAGACATAAAAACCATCA 516254 36 100.0 40 AAAACCATCA .................................... AGATGTTTGTTACCGTCAATGTAGCAACGAACTTTTTCAG 516330 36 100.0 36 ACTTTTTCAG .................................... GGGAGGAATCATCCAGTAATAGCCGACTTTCTTTTT 516402 36 100.0 37 CTTTCTTTTT .................................... ATTAAAGGGAGGGCTATATGAAGGAACCGGTCATCAA 516475 36 100.0 45 CGGTCATCAA .................................... AAACCTCCTGAATCTCCAGATCACCCCAAAACTGGGCTAGAAGGT 516556 36 100.0 GCTAGAAGGT .................................... CCACCCCTAT ========== ====== ====== ====== ========== ==================================== 16 36 39 GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [8,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.70,-5.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [231,46] Score: 0.18/0.18 # # Final direction: R [0.18,0.37 Confidence: MEDIUM] >NC_007776 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 604712 37 100.0 39 CTTCTCTCTA ..................................... AATACGAGCGAATTGACTGCGATATTCCTCACTACTATG 604788 37 100.0 43 CACTACTATG ..................................... AAGCCTTGACGAGCAAGGACTGCTCCTACCGTTCTAAGCACAA 604868 37 100.0 37 CTAAGCACAA ..................................... TTGGTTAAGGATGGCCTGGTCATAGACTTCTATGACT 604942 37 100.0 36 TTCTATGACT ..................................... AACGAGACTAATTTTGGATCCGAATCGGAGTCTTTC 605015 37 100.0 34 GGAGTCTTTC ..................................... ACGACATTCCCGAAGGCGCAACGATCAAATGGGG 605086 37 100.0 36 TCAAATGGGG ..................................... CATCCGGGAAACCGGGTGGGAGAGACTCTATTCAGC 605159 37 100.0 35 TCTATTCAGC ..................................... AACATCGTCGATGGTTTTCCCCATTTCGACTGGGC 605231 37 100.0 TCGACTGGGC ..................................... CCTACCCTCG ========== ====== ====== ====== ========== ===================================== 8 37 37 GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [8,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.70,-9.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [55.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [357,285] Score: 0/0.18 # # Final direction: R [0.27,0.37 Confidence: LOW] >NC_007776 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 866110 36 100.0 41 TGGCTATAGG .................................... AGCTTCGATCCAGCTCACGAGAGCGAGGATACGAGCAACAT 866187 36 100.0 37 CGAGCAACAT .................................... GGAGTTGGAATGGCAACGCAGGCTAGCAGGGTGTCAA 866260 36 100.0 37 AGGGTGTCAA .................................... GGAGTTGGAATGGCAACGCAGGCTAGCAGGGTGTCAA 866333 36 100.0 39 AGGGTGTCAA .................................... ACATATTGGCGGCAGGGCTTGCCGACCTTAATGGGCAGC 866408 36 100.0 33 AATGGGCAGC .................................... GATATAGGCATGATTTCTTCCTAAGATAGGAAA 866477 36 100.0 40 AGATAGGAAA .................................... GTTCCATATCAACTCCTCCCTTATCGGGGAATAAAGAACA 866553 36 100.0 38 ATAAAGAACA .................................... ACCCAGCGTTACAGGCCTTTTCCACGGCTGCTGCCGCT 866627 36 100.0 36 TGCTGCCGCT .................................... ATGGTACTGGCAAACCTGGAACGGTTTGCCAATCAA 866699 36 100.0 37 TGCCAATCAA .................................... CCAAGCGAAAGGTGCCGAGGAACTCTCAGAAGTGGAC 866772 36 100.0 40 AGAAGTGGAC .................................... CTACCAACCTGGGTACCCGCGCTCCCGGAGACTCAACCGT 866848 36 100.0 37 ACTCAACCGT .................................... TCGGTGTACCAGGTCACAATTTTCCGTCACCTAGAAA 866921 36 100.0 38 CACCTAGAAA .................................... GGTCAGCTGGATAGAAGCTGGCCGGTTCATCCGATCTC 866995 36 100.0 46 ATCCGATCTC .................................... TTAATCGTCTACACTACATGATCCGGCTCCTCGTCACCGCACGGCA 867077 36 97.2 37 CCGCACGGCA .........................A.......... GGGGGAGGTTGGTTGGGAGGTTGGTGGGAGTTAGACT 867150 36 100.0 GAGTTAGACT .................................... TCTACCCCTA ========== ====== ====== ====== ========== ==================================== 15 36 38 GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [8,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.70,-5.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [74,253] Score: 0.18/0.18 # # Final direction: R [0.41,0.55 Confidence: LOW] >NC_007777 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 32161 28 100.0 33 GTCAGCAAGT ............................ TGTCAGCCCGAAAGATCTCCGGTGGCCGTCGGC 32222 28 100.0 33 GGCCGTCGGC ............................ CCGCAGCAGTGTTCACCCGCGCATGTCTGTTAC 32283 28 100.0 33 TGTCTGTTAC ............................ CGAGATGAAACACAGCAGCTCGACAGGGGTGCC 32344 28 100.0 33 CAGGGGTGCC ............................ CTCGGCCCAGCCCATCCGCTCGATGGCGCAGCG 32405 28 100.0 33 TGGCGCAGCG ............................ CTCCCTCGCCGAGATGTGGGTGCTCACCCGCTG 32466 28 100.0 33 TCACCCGCTG ............................ CGGCTCTACGCCCTGCACCACGTCGACATCGCC 32527 28 100.0 33 CGACATCGCC ............................ CCAGAACATGACCACGGTCGGCTGTCGCGCGCT 32588 28 100.0 33 GTCGCGCGCT ............................ CCGTCTCCGCGGACTCGACCAGTCACCCATGCC 32649 28 100.0 33 CACCCATGCC ............................ GGTTCCCGAGCATCGACCGGGCGGCCTGCGACC 32710 28 100.0 33 GCCTGCGACC ............................ GGTCTCGTGCATTCCGATCGCGGCCGCGGCGGC 32771 28 100.0 31 CCGCGGCGGC ............................ TATTTTCCGGAGCTTTGAAACCCATTGCTTA 32830 28 100.0 33 CCATTGCTTA ............................ CATTGCGGTCCTGCACAGTCATCCAGACCAGGG 32891 28 100.0 33 CAGACCAGGG ............................ TCCCAGAGGGCAGTCCTGGAGTGGTGGCGCCCG 32952 28 100.0 33 GTGGCGCCCG ............................ CCTCGACGTACACCACAAGCGGCTACACGCCGA 33013 28 100.0 33 TACACGCCGA ............................ GAGCATCCGTCGGCTCCAGCTCGGCTGAGGCCG 33074 28 100.0 33 GCTGAGGCCG ............................ TTCGGGTGAAGAAAGCCGCGCGCAATCGCATTC 33135 28 100.0 33 AATCGCATTC ............................ GCGGGGGATGAGGTCGGCGGGCACGTGCCAGTG 33196 28 100.0 33 CGTGCCAGTG ............................ TTGAGATGGACGCCGACCACACGGCGCGGATCG 33257 28 100.0 33 GCGCGGATCG ............................ TCTGCTGTCATATCTGGTGGGTGGAAACCGCCC 33318 28 100.0 33 GAAACCGCCC ............................ CAGATCGGACCGGCCGGCTGGGGCTCCCACCGC 33379 28 100.0 33 CTCCCACCGC ............................ GCGCATGGGGTTGCAACTCCGCACCGCCCGGCA 33440 28 100.0 33 CCGCCCGGCA ............................ GGACGAGATTGCGGCGATCGGAAACGAGATCGT 33501 28 100.0 33 ACGAGATCGT ............................ GCCTGGCCCGGCCCGGCCGCGGGGTCGGGATGA 33562 28 100.0 33 GTCGGGATGA ............................ CTTCCCATCGACCCACAGCTAGGCATCCTGGAC 33623 28 100.0 827 CATCCTGGAC ............................ TGGCCCAGACGTGGGCCGACGACCAGCGCAATCGTCGTCCCCGCACGCGCGGGGATCTTCCTTCCAGCCTCATCCCGCCACCAACGTCCCGCAGGTCGTCCCCGCACGCGCGGGGATCTTCCCCCGAGGTCTTCGAGAAGGTAGAGGCTTCCCGGGTCGTCCCCGCACGCGCGGGGATCTTCCTAGCGGGACCGTCCGGGGCTGCAACCCCCGGACGGTCGTCCCCGCACGCGCGGGGATCTTCCCCCGTCGTCGCTGACCGCGCCCAACTTCGCGGCGTCGTCCCCGCACGCGCGGGGATCTTCCCCGTGCCCGTTCCCGGGCGATCCGCGCGCGCATGTCGTCCCCGCACGCGCGGGGATCTTCCTCTCGCCATCCAGAAAGTTGCCGGTTCCAGAGGGTCGTCCCCGCACGCGCGGGGATCTTCCTGCGCCGCGATGCGGCATGAGCGGCTTGTCGTCGTCGTCCCCGCACGCGCGGGGATCTTCCCCTACACCATGGACGACGTCAACGCTATGGCTGGTCGTCCCCGCACGCGCGGGGATCTTCCTTCGGGTGAAGAAAGCCGCGCGCAATCGCATTCGTCGTCCCCGCACGCGCGGGGATCTTCCCCTCAGATGAGGTGGGAAAGCTTGCCTTCGCGGGTCGTCCCCGCACGCGCGGGGATCTTCCTTGAGATGGACGCCGACCACACGGCGCGGATCGGTCGTCCCCGCACGCGCGGGGATCTTCCCCCCCACCCCTGTTTTCGAGGAGACCCCACGATGTCGTCCCCGCACGCGCGGGGATCTTCCCATCCAGGAAGGAGCAGACCGTGACCGTCGAGC 34478 28 100.0 ACCGTCGAGC ............................ GGTGAGCAGG ========== ====== ====== ====== ========== ============================ 26 28 64 GTCGTCCCCGCACGCGCGGGGATCTTCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [20,21] Score: 0/0.18 # # Final direction: R [0.27,0.37 Confidence: LOW] >NC_007777 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 33684 28 100.0 33 CAGCGCAATC ............................ TTCCAGCCTCATCCCGCCACCAACGTCCCGCAG 33745 28 100.0 33 CGTCCCGCAG ............................ CCCGAGGTCTTCGAGAAGGTAGAGGCTTCCCGG 33806 28 100.0 34 GGCTTCCCGG ............................ TAGCGGGACCGTCCGGGGCTGCAACCCCCGGACG 33868 28 100.0 33 CCCCCGGACG ............................ CCCGTCGTCGCTGACCGCGCCCAACTTCGCGGC 33929 28 100.0 33 ACTTCGCGGC ............................ CCGTGCCCGTTCCCGGGCGATCCGCGCGCGCAT 33990 28 100.0 33 GCGCGCGCAT ............................ TCTCGCCATCCAGAAAGTTGCCGGTTCCAGAGG 34051 28 100.0 33 GTTCCAGAGG ............................ TGCGCCGCGATGCGGCATGAGCGGCTTGTCGTC 34112 28 100.0 33 GCTTGTCGTC ............................ CCTACACCATGGACGACGTCAACGCTATGGCTG 34173 28 100.0 33 GCTATGGCTG ............................ TTCGGGTGAAGAAAGCCGCGCGCAATCGCATTC 34234 28 100.0 33 AATCGCATTC ............................ CCTCAGATGAGGTGGGAAAGCTTGCCTTCGCGG 34295 28 100.0 33 GCCTTCGCGG ............................ TTGAGATGGACGCCGACCACACGGCGCGGATCG 34356 28 100.0 33 GCGCGGATCG ............................ CCCCCACCCCTGTTTTCGAGGAGACCCCACGAT 34417 28 100.0 33 ACCCCACGAT ............................ CATCCAGGAAGGAGCAGACCGTGACCGTCGAGC 34478 28 100.0 ACCGTCGAGC ............................ GGTGAGCAGGG ========== ====== ====== ====== ========== ============================ 14 28 33 GTCGTCCCCGCACGCGCGGGGATCTTCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [28.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [869,21] Score: 0.18/0.18 # # Final direction: R [0.18,0.64 Confidence: MEDIUM] >NC_007777 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3904845 37 94.6 35 GCATCTTCGC ....C.................G.............. TGGTGGGCGAGGTGGGCCTGCGCCAGCGTCAGGTT 3904917 37 97.3 36 GCGTCAGGTT ......................G.............. GACGACCTGGTGCTGATCTGCACCAACGGCACCGCC 3904990 37 100.0 38 CGGCACCGCC ..................................... CGTCCGCCGCGACAGCAAAGACCTACACGCCACCCACC 3905065 37 100.0 35 GCCACCCACC ..................................... GTGTCCGCCTCCCGTGAGCTGCTCGTCCGCTGGTT 3905137 37 100.0 37 TCCGCTGGTT ..................................... CTGGGACACGGCCCGGATCCTCGCCGAGCGCAACGCC 3905211 37 100.0 34 GCGCAACGCC ..................................... GATGGTGACGACCTGGTGCTGATCTGCACCAACG 3905282 37 100.0 35 TGCACCAACG ..................................... TCGATGGTGCCGTCGGGCTGGTCAACGCCTTGGAT 3905354 37 100.0 34 CGCCTTGGAT ..................................... AAGTGCTCGAACATGTCGTCGACTGCATCCGGGT 3905425 37 100.0 36 GCATCCGGGT ..................................... CCCCGGCCGGCGCTCACCGTCGCCGCCTGGTCCTAT 3905498 37 100.0 34 CTGGTCCTAT ..................................... TCGCGAACACCAGCTGGTTGGAGCCACGCGGGTA 3905569 37 100.0 36 CACGCGGGTA ..................................... TGCGCCCCCGCTATCTGGTCCCGCTTTTCCTCGGGA 3905642 37 100.0 34 TTCCTCGGGA ..................................... GACCGCTGCTTGAGCCGACCGGTCACAATGACCC 3905713 37 100.0 37 ACAATGACCC ..................................... CCGCTCCGGCCTGGATCGCCAGATGTCCGCCCTTGCG 3905787 37 100.0 36 CGCCCTTGCG ..................................... CTGTAGGGGCACGTTGTAATGCTTTCCGGCCCGGAG 3905860 37 100.0 CGGCCCGGAG ..................................... CCTGCTTGTA ========== ====== ====== ====== ========== ===================================== 15 37 35 GTTGTGATCCTCGCCGAGGGCGATCCCTCGGCGCTGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-15.60,-17.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1122,304] Score: 0.18/0.18 # # Final direction: R [0.18,1.42 Confidence: HIGH] >NC_007777 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3971225 37 100.0 36 CTCAGACAGG ..................................... CTCGAAGCCGTCCTCGGCGGCCTCGGCGCACTGGCC 3971298 37 100.0 36 CGCACTGGCC ..................................... TGCAACACGGACAGGTTGGTGATCTGGTCGACGGAA 3971371 37 100.0 35 GTCGACGGAA ..................................... AACACCGGCGGGACCATCCCAAAAAGTGATCACTT 3971443 37 100.0 35 GTGATCACTT ..................................... TACTGGCTGCGGAACGTCGCCCCAGCCGATCTGGG 3971515 37 100.0 34 CCGATCTGGG ..................................... AACGAGAGGACGTTATGACCAGCCGTATAGATCA 3971586 37 100.0 35 GTATAGATCA ..................................... GCCCTGGAAGTCGACGAGATCGACGCTGCCGCGGC 3971658 37 100.0 35 CTGCCGCGGC ..................................... CTGGTCGCCTACGTGGTGCCCGCCGAGGGGGAGAG 3971730 37 100.0 35 AGGGGGAGAG ..................................... ACCGGTTCGTTGACGAAATGCAGCCCGAATACGTC 3971802 37 97.3 39 CGAATACGTC ........................T............ TGCACCGTTGACACATCCCCACTATTCGACACGGTCGAA 3971878 37 100.0 36 CACGGTCGAA ..................................... GTCAACATCGCCGACGGATGGGCGCCGTCCTCGAAC 3971951 37 100.0 36 GTCCTCGAAC ..................................... GAGGTGTACACCACCTCAGACACTCTCGATGTCGTC 3972024 37 100.0 38 CGATGTCGTC ..................................... TCCGCGAGGAGGTCGGCGAGGGTGGTCAGGCCATCGGC 3972099 37 100.0 35 GGCCATCGGC ..................................... GCCATCCTGCTGTACGGCGTCGCGACGAAGATCGA 3972171 37 100.0 34 CGAAGATCGA ..................................... ACCAGCTCCTCGGCGCCGGGGATGTCCGCTGGGA 3972242 37 100.0 37 TCCGCTGGGA ..................................... GACAGCTCCGAGATCGGCCCGCTCGGGGACCGGCCGG 3972316 37 100.0 34 GACCGGCCGG ..................................... CCGATCTGCTGGTCGACATCGCCCCCGAGGGGGA 3972387 37 100.0 35 CCGAGGGGGA ..................................... ACCTCGTGGCAGCAGGTCCAGGACTACGTCGAGCA 3972459 37 100.0 36 ACGTCGAGCA ..................................... CGCTCGACAGGTCGATCTCGTACAGGGCGCCGTCCA 3972532 37 100.0 38 GCGCCGTCCA ..................................... GATGGCGCACCGGCGCAGCTCGGCGTTGCGCTCGGCGA 3972607 37 100.0 34 CGCTCGGCGA ..................................... TACTCCGGCACCGAGACCGCCGCGAACATCACAG 3972678 37 100.0 AACATCACAG ..................................... CCCGTGGTGG ========== ====== ====== ====== ========== ===================================== 21 37 35 GCAGCGCCGGGCGTCCGCGCCCGGCGAGGTTCCCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [4,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-18.10,-17.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [46.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [135,803] Score: 0.18/0.18 # # Final direction: F [1.01,0.18 Confidence: HIGH] >NC_007793 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 2388923 23 100.0 33 NNNNNNNNNN ....................... CATTATTGTATGCTGACTTTTCGTCACCTTCTG 2388979 23 100.0 36 NNNNNNNNNN .............TTCC.CAA.T TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA 2389038 23 100.0 33 NNNNNNNNNN ....................... CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG 2389094 23 100.0 1 NNNNNNNNNN .....................T. NNNNNNNNNN ========== ====== ====== ====== ========== ======================= 4 23 34 TGTTGGGGCCCCGCCAACTTGCA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.90,-2.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [357,143] Score: 0.18/0.18 # # Final direction: R [0.55,0.78 Confidence: LOW] >NC_007793 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 940549 30 100.0 26 NNNNNNNNNN .............................. CGGGGCCCCAACACAGAGGCTGGCGG 940605 30 100.0 28 NNNNNNNNNN .............................. GGTGGAGCCCCGACACAGAGAAATTAGC 940663 30 100.0 26 NNNNNNNNNN TCCTCA.TT.CTAC.G.CAA.......... CGGGGCCCCAACACAGAAGCTGGCGA 940719 30 100.0 53 NNNNNNNNNN .............................. GGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAA 940802 30 100.0 1 NNNNNNNNNN ....A....AGTAGGATAAT.T...T.... NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 5 30 33 AAAGTCAGCTTACAATAGTGTGCAAGTTGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.50,-1.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [152,71] Score: 0.18/0.18 # # Final direction: F [0.96,0.27 Confidence: MEDIUM] >NC_007795 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1776486 36 100.0 23 NNNNNNNNNN .................................... AGCTGGCCAATAGTCAGCTTTCA 1776545 36 100.0 19 NNNNNNNNNN .................................... GAATTTCGAAAAGAAATTC 1776600 36 100.0 23 NNNNNNNNNN TAC.GACAATGCAA.TT.GCG............... AGCTGGCCAATAGTCAGCTTTCA 1776659 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 4 36 21 ATAATGTGCAAGTTGGGGTAAGGGCCCCAACACAGA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [12,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-13.70,-11.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [50.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [353,305] Score: 0/0.18 # # Final direction: F [1.15,0.27 Confidence: MEDIUM] >NC_007795 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 2335711 23 100.0 33 NNNNNNNNNN ....................... CATTATTGTATGCTGACTTTTCGTCACCTTCTG 2335767 23 100.0 36 NNNNNNNNNN .............TTCC.CAA.T TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA 2335826 23 100.0 33 NNNNNNNNNN ....................... CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG 2335882 23 100.0 1 NNNNNNNNNN .....................T. NNNNNNNNNN ========== ====== ====== ====== ========== ======================= 4 23 34 TGTTGGGGCCCCGCCAACTTGCA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.90,-2.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [61,143] Score: 0.18/0.18 # # Final direction: R [0.37,0.96 Confidence: MEDIUM] >NC_007795 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 860412 30 100.0 26 NNNNNNNNNN .............................. CGGGGCCCCAACACAGAGGCTGGCGG 860468 30 100.0 28 NNNNNNNNNN .............................. GGTGGAGCCCCGACACAGAGAAATTAGC 860526 30 100.0 26 NNNNNNNNNN TCCTCA.TT.CTAC.G.CAA.......... CGGGGCCCCAACACAGAAGCTGGCGA 860582 30 100.0 53 NNNNNNNNNN .............................. GGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAA 860665 30 100.0 1 NNNNNNNNNN ....A....AGTAGGATAAT.T...T.... NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 5 30 33 AAAGTCAGCTTACAATAGTGTGCAAGTTGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.50,-1.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [152,71] Score: 0.18/0.18 # # Final direction: F [0.96,0.27 Confidence: MEDIUM] >NC_007796 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1568546 29 100.0 32 NNNNNNNNNN ............................. TGGATGTCAGAAGGATTGGCGTTTCGCGATCG 1568607 29 100.0 32 NNNNNNNNNN ............................. GAAATGGGATTGAAACAAACGAAGGAAGTAGA 1568668 29 100.0 32 NNNNNNNNNN ............................. ATAAAAAAAATCTAATCCTCCAACACATCATG 1568729 29 100.0 32 NNNNNNNNNN ............................. GTGTTTGCAGCACCTTACGTTCCCCGTTTTGA 1568790 29 100.0 32 NNNNNNNNNN ............................. CTAAAACAAAAATTAGTTAAGTTTTAAGCGCT 1568851 29 100.0 32 NNNNNNNNNN ............................. ATCGAAATGATGACCTTCTCTTCTTCGGTCAT 1568912 29 100.0 32 NNNNNNNNNN ............................. GTCATGAAGTGTTTCTCTGAATGCAAGATATG 1568973 29 100.0 32 NNNNNNNNNN ............................. TTTGGATTCATGCGGGAAAATGTGTGATGCTT 1569034 29 100.0 32 NNNNNNNNNN ............................. AACTTGCTCCCCACTCTCATCGATATTACACA 1569095 29 100.0 32 NNNNNNNNNN ............................. TGAGGATGGGGCTTCCTGCTTCATAGAGACAA 1569156 29 100.0 32 NNNNNNNNNN ............................. GGCATCAGGTTATGAACCTGATTAATGACATA 1569217 29 100.0 32 NNNNNNNNNN ............................. GAAACTGGTTGAGATTATGATTCTGCCGATTC 1569278 29 100.0 32 NNNNNNNNNN ............................. GTATATCGCGTTCTATCCCTCAATTCTTGGCG 1569339 29 100.0 32 NNNNNNNNNN ............................. TCAAGTCCGATGTCAGATAAGATGGTCGCATC 1569400 29 100.0 32 NNNNNNNNNN ............................. TCCCGAAAGAATGCCCTCATCTAATTTCGTTC 1569461 29 100.0 32 NNNNNNNNNN ............................. TACCGCTGATAGTCAACACTCCACGAGTTTCA 1569522 29 100.0 32 NNNNNNNNNN ............................. CAATTCTTTCGCATCAAGCATGGATTCGAGTT 1569583 29 100.0 32 NNNNNNNNNN ............................. GTGTTATCTTCCTTCTGATTGACTCGGAATTT 1569644 29 100.0 32 NNNNNNNNNN ............................. GGGTACTTCCGGGCCATGAGGGGAACCATCAC 1569705 29 100.0 32 NNNNNNNNNN ............................. CCAACCGTCGCCAATTTCAGTTTTGCCTGTTT 1569766 29 100.0 32 NNNNNNNNNN ............................. ATTATATCAATAGATTTGTATTTTTCTTTGTT 1569827 29 100.0 32 NNNNNNNNNN ............................. CAATATCCTCTGATATAATTGTTTTACGTGCC 1569888 29 100.0 32 NNNNNNNNNN ............................. AAGACCGTCTGAAGTCCACATAAGGATTTGTC 1569949 29 100.0 32 NNNNNNNNNN ............................. GTTTTAATGGCGCCCTTATCGGTATTCTATCC 1570010 29 100.0 32 NNNNNNNNNN ............................. ATGATATCTGTCACGGCTCATACTACCAGTGC 1570071 29 100.0 33 NNNNNNNNNN ............................. TTCATCTAACCATTCACTGATCAAATCATACAC 1570133 29 100.0 32 NNNNNNNNNN ............................. TTTCAGGATTTCCTCATAGAATTCCAGGTCTA 1570194 29 100.0 33 NNNNNNNNNN ............................. GTACACATTTGGTGAACATTTGAATACTCTCTC 1570256 29 100.0 32 NNNNNNNNNN ............................. TCAAGAGTCTGTTCTAATACAGTCTCTTGAGC 1570317 29 100.0 32 NNNNNNNNNN ............................. ACAGGTATGACATACAGTATTGAGTGTTGCAA 1570378 29 100.0 32 NNNNNNNNNN ............................. GCCCCACCCCCCCCATACTCTGCGTAGGTACT 1570439 29 100.0 32 NNNNNNNNNN ............................. ATACATCATTTCGCGGACTGCCTTGCACTGGT 1570500 29 100.0 32 NNNNNNNNNN ............................. GTGAAATAAGCGGGCTTGACGGGAAAATTATC 1570561 29 100.0 32 NNNNNNNNNN ............................. GGAAACGGCAATAACATCACGTTAGGAGGTGA 1570622 29 100.0 32 NNNNNNNNNN ............................. ATCCTCATGCGGCCTTCCCTCTTCCAGTTCTT 1570683 29 100.0 32 NNNNNNNNNN ............................. TCCAGGCAGTTTGATTTGAATTCTTTTTCTGA 1570744 29 100.0 32 NNNNNNNNNN ............................. TCAGGAGTGCCTCCAAGTGCTTCAATCGCCTG 1570805 29 100.0 32 NNNNNNNNNN ............................. TATTTGTCTCATGGGCCTAATACCTCTACCCC 1570866 29 100.0 32 NNNNNNNNNN T............................ TCCGCCTTTCCCTGCCTACTCATTGCAGAGTC 1570927 29 100.0 32 NNNNNNNNNN ............................. TCCTTGGGTTTTCTGATGGTTCTATCAGGATT 1570988 29 100.0 32 NNNNNNNNNN ............................. TATGCAAAAGGAGCGATAAGCACGTCTACGTA 1571049 29 100.0 32 NNNNNNNNNN ............................. CCGCATTCGCAGGCAATATCACAGGTTGCACA 1571110 29 100.0 32 NNNNNNNNNN ............................. GCCTGCCCTATGTTCCAGAGCCGATCTTCCCA 1571171 29 100.0 32 NNNNNNNNNN T............................ GATTCAAATTTGTATTATTTACCCGATTTTTA 1571232 29 100.0 32 NNNNNNNNNN T............................ ATCCCTCTATCACAACCAAACATCAGGTAATC 1571293 29 100.0 32 NNNNNNNNNN ............................. CAAGTCTCCTGCAGACTATATAAAGATATACG 1571354 29 100.0 32 NNNNNNNNNN ............................. ATGTTGCGTTCCCTGATGCATCCAGCGTGCAT 1571415 29 100.0 32 NNNNNNNNNN ............................. ATTCCATCAGATGTATCTGTCATATATTGCCT 1571476 29 100.0 32 NNNNNNNNNN ............................. TAATAACTCCAACTGTTTTAATATTGCTTCTA 1571537 29 100.0 32 NNNNNNNNNN ............................. TAATAACTCCAACTGTTTTAATATTGCTTCTA 1571598 29 100.0 32 NNNNNNNNNN ............................. TTTGATCCGCTCCAGTGAGAAACCATAGAACT 1571659 29 100.0 32 NNNNNNNNNN ............................. TTTGATCCGCTCCAGTGAGAAACCATAGAACT 1571720 29 100.0 32 NNNNNNNNNN ............................. ATAAGCTGAACAAACAATGTCAAGATTCATTG 1571781 29 100.0 32 NNNNNNNNNN ............................. AATTGCACCAGCACAGTATTTTGAACTCATTT 1571842 29 100.0 32 NNNNNNNNNN ............................. GGTTGGATTAAAATCTCCTGTTGTTTATCTCT 1571903 29 100.0 32 NNNNNNNNNN ............................. TCAAATTTCTTTAAGTGTTCTACTCCGGTTAT 1571964 29 100.0 32 NNNNNNNNNN ............................. GCCGTTATCCCAAGTTCCATTCGCTTCATAAT 1572025 29 100.0 32 NNNNNNNNNN ............................. GTTTTGATATTGAACTATCAGAGGATGGGTTA 1572086 29 100.0 32 NNNNNNNNNN ............................. TCATTTACCGTAAAGACGATTGGTGCATTTAA 1572147 29 100.0 32 NNNNNNNNNN ............................. ATAAGCGCACGGCAGAACGGAAGCGCGAAGGG 1572208 29 100.0 32 NNNNNNNNNN ............................. TTTATTCGCGGCGATTACTATTTCAGATATTA 1572269 29 100.0 32 NNNNNNNNNN ............................. GGGTGCATCCCGTGTTGAATTGAATACATAAA 1572330 29 100.0 32 NNNNNNNNNN ............................. TTGGTTGGTGAACTTGGTGCTATTGTCGGATA 1572391 29 100.0 32 NNNNNNNNNN ............................. TTGGAGAATGGGTGCTACTCTGTTTATAGGGG 1572452 29 100.0 32 NNNNNNNNNN ............................. GAATTCTTCGGCTCTCTGTTTTGCTGCGTTTG 1572513 29 100.0 32 NNNNNNNNNN ............................. CGATTATGTCCTGTGGGACTGTTTTTATTACA 1572574 29 100.0 32 NNNNNNNNNN T............................ GCAGGAGTTGTGTTCATTGGCTGTCCATTAGG 1572635 29 100.0 32 NNNNNNNNNN ............................. ATCAACCCTATATTCGACATTGGAGCACGTAA 1572696 29 100.0 32 NNNNNNNNNN ............................. AGGAGATGTATCGAACAAAGAGCATTGGATTG 1572757 29 100.0 32 NNNNNNNNNN ............................. ATTAGTGGAAGACGTCCGGGCCTTTGCCGAAG 1572818 29 100.0 32 NNNNNNNNNN ............................. TGCAACCCGATGATAATCATTCACTACCTTTC 1572879 29 100.0 32 NNNNNNNNNN ............................. GTGGCTACAATCGTGTGATCTGCTCGCACATT 1572940 29 100.0 32 NNNNNNNNNN ............................. GTAGTGATCACTCATCATCATCACCATAAGCA 1573001 29 100.0 32 NNNNNNNNNN ............................. AACACAGAACCAACCATCCGGAAGTGCTGGTA 1573062 29 100.0 32 NNNNNNNNNN ............................. TTACTGCCATTTCTTTCATCAGGGTTGGTGTG 1573123 29 100.0 32 NNNNNNNNNN ............................. CAGGTTCGTGATCTTCTGACCGACCGGCATTC 1573184 29 100.0 32 NNNNNNNNNN ............................. CCGCATCAACCCATTCACACGTTTCGGCATGT 1573245 29 100.0 32 NNNNNNNNNN ............................. CAGGGACATCTCAAGAAGGGTAATCGTGGTGT 1573306 29 100.0 32 NNNNNNNNNN ............................. TACACGTTTGTGGATGATGCAGTTATCCGGAT 1573367 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 80 29 32 CGGTTCATCCCCATACACACGGGGAACTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [7,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1035,64] Score: 0.18/0.18 # # Final direction: F [1.23,0.37 Confidence: MEDIUM] >NC_007796 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2088864 37 100.0 37 CGTAGAAGGG ..................................... TTGATGAATTGAAACACCCTTGGATCATATATATAAG 2088938 37 100.0 36 TATATATAAG ..................................... CTTTTTGTTCCTGTTGTTTGTATTTGAACCATCTAG 2089011 37 100.0 35 AACCATCTAG ..................................... TTGTTGCGATTATATGAAGATTATAAGAAAACGCA 2089083 37 100.0 35 AGAAAACGCA ..................................... AAAAATCTATTCACAGGGATACAACCTCGTTCTGG 2089155 37 100.0 35 CTCGTTCTGG ..................................... ATCACTGAAGTTCCCTTAGGTGTTGGAGCATTATT 2089227 37 100.0 35 GAGCATTATT ..................................... GAGTTTCCACATCAATTTTCATGGTATCACTCCGG 2089299 37 100.0 36 ATCACTCCGG ..................................... CTTGTTAATTTCCTTTAATGCTGCATCACATACTAA 2089372 37 100.0 35 CACATACTAA ..................................... TTGGGTCTTGGCCTGCATCATTGGGGGAAGTATAC 2089444 37 100.0 37 GGAAGTATAC ..................................... GAGTGTACATGGTCACATCAGTCAAAAAGGATCATGT 2089518 37 100.0 35 AGGATCATGT ..................................... ACTATGAATCCTCACGACTTCGAAGAGCCGGGCAA 2089590 37 100.0 36 AGCCGGGCAA ..................................... AACATCTGCAACTCTGCCTCCGCTTGTCAGATTATG 2089663 37 100.0 35 TCAGATTATG ..................................... CCGGTATATCACAAATCATCTGTTGAGTTATAAAT 2089735 37 100.0 35 AGTTATAAAT ..................................... TTTTACCTTTATGCGCTGAAACCGCTTCCATGGAC 2089807 37 100.0 35 TTCCATGGAC ..................................... CGGAGAGCGGGATCCGGGAGTGAGCACACAGCAGA 2089879 37 100.0 37 ACACAGCAGA ..................................... TCGAGGGGCTCTGGGGGCTCATGGGATCCGGACCCGG 2089953 37 100.0 36 CCGGACCCGG ..................................... ACCTGACCGGCCTTTATCGTTGCTCCGGCGGTGAAA 2090026 37 100.0 36 GGCGGTGAAA ..................................... AATTACCAAGTTTTTCACTGACATACTCGCATCATT 2090099 37 100.0 36 TCGCATCATT ..................................... TGGGCAGGCATGTGATGAGCGGACCAGTGGAACTCA 2090172 37 100.0 36 GTGGAACTCA ..................................... GAGTATTTCTGGGGGTCTGTCGTAATTGCTGTCTGA 2090245 37 100.0 36 TGCTGTCTGA ..................................... GTAATCCTTGCGAGCGGGCTTTATGGTACAGTTATG 2090318 37 100.0 34 TACAGTTATG ..................................... CAGGCATAAGGGCCTGGTTGAATGGCTAAAACTT 2090389 37 100.0 35 GCTAAAACTT ..................................... TTATATTGGGAATGTGAGCAATGGTGGATTTATGT 2090461 37 100.0 35 GGATTTATGT ..................................... ATTCTTTCAGGGCTTTAAGGTCTTCGCTCATATAA 2090533 37 100.0 37 GCTCATATAA ..................................... GAACGGAAGGCGCAAATCTCATAACGTTCTGGGATGA 2090607 37 100.0 37 TCTGGGATGA ..................................... TTGCTGCCTTTCGCTCAAACTCCTTGCGGGCGCCAGA 2090681 37 100.0 34 GGGCGCCAGA ..................................... ATATTCCGGTGTTAGAACCGCGGCGTCTGCAGAA 2090752 37 100.0 35 GTCTGCAGAA ..................................... AGTAGCAACACCGGCATACGAAGCGGGGTTACTCA 2090824 37 100.0 35 GGGTTACTCA ..................................... ACGTAGATCTCATGAGCAACATTGTGGCTGAACTG 2090896 37 100.0 36 GGCTGAACTG ..................................... CCATTTGGGTCTGTGTATCGAACTGCACATACCACC 2090969 37 100.0 37 ACATACCACC ..................................... ACGGGTCAGACCCTTCAATGTTCAGCGACTCTGAAAA 2091043 37 100.0 35 ACTCTGAAAA ..................................... CCGGTTCCCCGACATCGAAAGCGTCCCGGAGAGGA 2091115 37 100.0 37 CCGGAGAGGA ..................................... CTGAATACCAAGCTAGACAAACTTTTGGCACACTTTG 2091189 37 100.0 36 GCACACTTTG ..................................... CATTTACCCATTCAGTACCAGTCCAAACATAACAAT 2091262 37 100.0 36 ACATAACAAT ..................................... TGATCAGGGGAGTATGTGCAATGCTCAGTTACGAAG 2091335 37 100.0 36 AGTTACGAAG ..................................... ACACATTTTCCTGCCGCCCACGTTACACATATCTGT 2091408 37 100.0 35 ACATATCTGT ..................................... ACACCAGTCGTAACCGCTTCTGCTGCTGTTGCTGA 2091480 37 100.0 35 CTGTTGCTGA ..................................... TCACATCGTATCCTGCCTTGAAATCAAGATATGCG 2091552 37 100.0 36 AAGATATGCG ..................................... CAGACTATAATCAGCCGTCATTACCAGTCTCTCAAA 2091625 37 100.0 35 GTCTCTCAAA ..................................... TTGTCTCCGGTCTTCAGGCATACCACCCGGTCATA 2091697 37 100.0 36 CCCGGTCATA ..................................... TAATATATTAGACATTAATCCAAGTGGTAAATATTA 2091770 37 100.0 37 GTAAATATTA ..................................... AGGTCACCCGGTTTGACGATGAGAGAGATTCAAGCCC 2091844 37 100.0 36 ATTCAAGCCC ..................................... TGTACGAGTTGTAATGCCGGGTAATGTGCCGGCGTA 2091917 37 100.0 TGCCGGCGTA ..................................... CGGAATCCATCGGAGTTCCCGCACCTTCAAGAGA ========== ====== ====== ====== ========== ===================================== 43 37 35 GTTTCAATCCCTATCGGGTTTTCTTTTCCATTGTGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:59.46%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.60,-4.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [296,104] Score: 0.18/0.18 # # Final direction: R [0.18,4.87 Confidence: HIGH] >NC_007796 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2093078 37 100.0 37 NNNNNNNNNN .GC..TTCTG.GTAACTCC.A................ TTCCTGTAATCATTGGAGGGATACTGGGATTGCTCCT 2093152 37 100.0 36 NNNNNNNNNN ..................................... TAACCTTAACACGGCAAACAGTAAGCAAGTAGGATT 2093225 37 100.0 37 NNNNNNNNNN ..................................... CGGGAAACTGGGGTTTATCGGGCAGATTTTGAGATTA 2093299 37 100.0 36 NNNNNNNNNN ..................................... CTTCCTACCTGTAAGGGGGGGAGTATCCATAATGTC 2093372 37 100.0 34 NNNNNNNNNN ..................................... AAACCGTATGGCCGCAGTCATTATGATCCAATGG 2093443 37 100.0 36 NNNNNNNNNN ..................................... TTTCCTGCGCTGAGGATGTCATTGAGATGATGATGG 2093516 37 100.0 34 NNNNNNNNNN ..................................... TTCATCGCCGCGTTTTATAGCATTCCCTGCAGGA 2093587 37 100.0 36 NNNNNNNNNN ..................................... CTGAGTTTCCAGCCCCGTTTGAGTATCATGAGAGCA 2093660 37 100.0 37 NNNNNNNNNN ..................................... GCTCCCTCTCCCTCATCAGCTCATCAGATGACACTAT 2093734 37 100.0 35 NNNNNNNNNN ..................................... CGTGAGCCGTGGTCTGACTTCTGACGCCTTCCTGA 2093806 37 100.0 36 NNNNNNNNNN ..................................... CATCGACTTCTTCCCGCGGTTCTTCCGGCTGACTGT 2093879 37 100.0 37 NNNNNNNNNN ..................................... CACATCAATCACAGCCGATGATATGCGTAAGGCATTA 2093953 37 100.0 36 NNNNNNNNNN ..................................... CCTGATTCTACGGGCCTTTTCAAGTGCAGTTTCCAT 2094026 37 100.0 36 NNNNNNNNNN ..................................... CCTCATGGATCGGTTGACTGAAAACTCAGTAGCCAT 2094099 37 100.0 37 NNNNNNNNNN ..................................... CCTGCCATTATATCTCTCTATAAATGATTCGCACGTC 2094173 37 100.0 36 NNNNNNNNNN ..................................... CTATGGTGATGTTTTCGTTATGTCATCCGGGTATTT 2094246 37 100.0 35 NNNNNNNNNN ..................................... CGGGTCATGTCCCGCCGGTTGTCTGCTATCCGATA 2094318 37 100.0 35 NNNNNNNNNN ..................................... ATGTAACATCTCACTGGTATGACCATCTATCCAAT 2094390 37 100.0 36 NNNNNNNNNN ..................................... ACTCGCTGAATGGATCGGTGAGTCTGTTGATGCAAT 2094463 37 100.0 37 NNNNNNNNNN ..................................... CGCAGCGGCCAGCAAAGTTCATTCGACCACCCGCCTA 2094537 37 100.0 34 NNNNNNNNNN ..................................... ATCCGGATATCATAGATTTCATCAAAGCGAAATC 2094608 37 100.0 36 NNNNNNNNNN ..................................... CTCTGGTTTAGCATACCTCCTGTGAGGGCTATACGT 2094681 37 100.0 36 NNNNNNNNNN ..................................... CCAGGAGAGTACTGCATACAGTCTAGTCCTACATTG 2094754 37 100.0 36 NNNNNNNNNN ..................................... ACATAAATACGGGGCAAAAATACACGGGTTAGGATT 2094827 37 100.0 38 NNNNNNNNNN ..................................... CTTTTTGAGATAGACTTCGCTGAGGAGTTCAAACCATA 2094902 37 100.0 37 NNNNNNNNNN ..................................... CTTTTGCATATACGCGTAATATAATTACACACACATA 2094976 37 100.0 36 NNNNNNNNNN ..................................... CGCGACATTCGGCACGAACCCACGGGGCGACGGACT 2095049 37 100.0 34 NNNNNNNNNN ..................................... GGTAGACATACCCCTGGCCGTCCCAGACATATTC 2095120 37 100.0 36 NNNNNNNNNN ..................................... CATCAAGAATCAACTTCTTAACCAGATGATGTGAAT 2095193 37 100.0 36 NNNNNNNNNN ..................................... CCGTGCCCTTGCGGCTACCATTTTCTTTCTTGCAAT 2095266 37 100.0 36 NNNNNNNNNN ..................................... TTTGTAATCTCCTGTCTGGACTTCCTCGTAACCAAT 2095339 37 100.0 35 NNNNNNNNNN ..................................... CATTTCTCAACTGGGTATTCTTCAGCCGTATGTGA 2095411 37 100.0 34 NNNNNNNNNN ..................................... TCGACTCAATGAAAAAGAAGACTTTCATGAGTGA 2095482 37 100.0 35 NNNNNNNNNN ..................................... CCGCGTAAAAATAGCAGGAGGCATGTAATGACAGA 2095554 37 100.0 36 NNNNNNNNNN ..................................... CAGGATATCAAAGAATATGAAATGTTGGAATATAGG 2095627 37 100.0 35 NNNNNNNNNN ..................................... ATAGGATCTATCCAACCAAACTCTGATATAGATTT 2095699 37 100.0 37 NNNNNNNNNN ..................................... GAGACTGCCCAGAGATCTCATAGAACGCCTGGTCAGC 2095773 37 100.0 37 NNNNNNNNNN ..................................... TCACAAATGACACCGCTCTCGCAGTCAATGCAACGAA 2095847 37 100.0 36 NNNNNNNNNN ..................................... GTGCCAAATGTCGGATTACCATCCGCGGATAGTTGA 2095920 37 100.0 38 NNNNNNNNNN ..................................... ACGAGTAAAGGCCGCTATTGAGATGGGGCAGGACTCAA 2095995 37 100.0 35 NNNNNNNNNN ..................................... CTCACTCGTCCCTGTGTGTTCCTATGGTTATATTA 2096067 37 100.0 36 NNNNNNNNNN ..................................... CTCAATGAGTGCATCTATTGCCTCCTGGTTGATCGG 2096140 37 100.0 36 NNNNNNNNNN ..................................... AAGGGACTATGCAATCCTTCATGATCTCACACTAAT 2096213 37 100.0 36 NNNNNNNNNN ..................................... TGGAGTTGTGGGAACTCCTGAAAATTCATCGTCATA 2096286 37 100.0 35 NNNNNNNNNN ..................................... TTCAAAAACACCTGATTCAATGAGATGATTGATTT 2096358 37 100.0 35 NNNNNNNNNN ..................................... GATACCGCTTCAGTCATCAGCACACCCCCAAAATA 2096430 37 100.0 35 NNNNNNNNNN ..................................... TGGAGTTAGTTTAGGAGCCATAAACCGGCACCGGG 2096502 37 100.0 36 NNNNNNNNNN ..................................... GGAGTGATGAATGATTGAAAAAGAGTGTAAGCCATT 2096575 37 100.0 35 NNNNNNNNNN ..................................... GTGATAAAAGGATTAGAAAAATCTTCACCAGAAGG 2096647 37 100.0 34 NNNNNNNNNN ..................................... CCGAATATGAAAGAGATAGAGAATTGCCTAATGG 2096718 37 100.0 36 NNNNNNNNNN ..................................... ATAATTACCCACGCGCACCAAAATAAGATAATATTA 2096791 37 100.0 34 NNNNNNNNNN ..................................... CCAGCTTGAGCTCATAACGAGTAGTCCTGAACAG 2096862 37 100.0 36 NNNNNNNNNN ..................................... AATTTTTTACCAGGATTTTGGTGGGATTTGATCCAC 2096935 37 100.0 35 NNNNNNNNNN ..................................... GCAGTTTTGACTTTTCCACTCTCGACGGTACGTCA 2097007 37 100.0 36 NNNNNNNNNN ..................................... TGTAATGCTTGTCTCTACACTGAATAGCGAACCCGT 2097080 37 100.0 35 NNNNNNNNNN ..................................... TGAGGCAATTTTCTAAAGGGGGGATTACAATAACA 2097152 37 100.0 34 NNNNNNNNNN ..................................... CTGACCTCGTTGATGGTGAGAGTCCGGTATTTGG 2097223 37 100.0 37 NNNNNNNNNN ..................................... CAGGTATCACAGGGAGTTCCATTCTTATCAACGAGGT 2097297 37 100.0 35 NNNNNNNNNN ..................................... ATGGCATCATCAACCGGAATGGGTCAGTCGGATCA 2097369 37 100.0 37 NNNNNNNNNN ..................................... GACGATGAGGGAGATGATTCAGGAGGAGATTCAGAAA 2097443 37 100.0 36 NNNNNNNNNN ..................................... GCGATCATTACCTGGAATAATCAGATTGTTGATGGT 2097516 37 100.0 35 NNNNNNNNNN ..................................... CTGTAGTTGTCGGATCTTCGTAGTTCATGCGTTCT 2097588 37 100.0 36 NNNNNNNNNN ..................................... GGCAGTTACTGACGGACTTTCGACGGTGCAGAAAAA 2097661 37 100.0 35 NNNNNNNNNN ..................................... AGAATTGGAGATCATCATGGTAAACAGCAACATTG 2097733 37 100.0 35 NNNNNNNNNN ..................................... AGTTCCGTTCGACGTCCTCAAGGGCTTTTTCGAAT 2097805 37 100.0 36 NNNNNNNNNN ..................................... GAGGCCAACCTCCGAACCGTTGATCGAAACATCCCT 2097878 37 100.0 1 NNNNNNNNNN ..................................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 67 37 35 GTTTCAATCCCTATCGGGTTTTCTTTTCCATTGTGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:59.46%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.60,-4.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [12,119] Score: 0.18/0.18 # # Final direction: R [0,5.46 Confidence: HIGH] >NC_007796 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 841173 36 100.0 34 TAATTTTCAC .................................... GCAGACCGCGACGAGGCCTGGGGCAGACTGGAAA 841243 36 100.0 35 AGACTGGAAA .................................... TATTTCTCCTTCAAAACGTTTAATGTACTTATTCA 841314 36 100.0 34 TACTTATTCA .................................... AGCAGATGACATAGTAAACAGAATCACTGAACTG 841384 36 100.0 35 CACTGAACTG .................................... CTATTCCCCTGCACGATTGAGAAACCCGGCGCATA 841455 36 100.0 35 CCGGCGCATA .................................... GACTCAAGTGCAAAGAAAGCAATCATAGAACTTCT 841526 36 100.0 33 TAGAACTTCT .................................... TTTCATCCCATGCAAACAGGTGCCGGGCAATCA 841595 36 100.0 38 CGGGCAATCA .................................... TATCAGAATTCTGGAAAGCCGTCTCTCAAGAGCGTGTG 841669 36 100.0 33 AGAGCGTGTG .................................... CCTGTCACGAGATGACGTGTCAGCCATGAAGTG 841738 36 100.0 34 CCATGAAGTG .................................... TATCAATTAACCTATGTTCTACTCTTCTGTATGT 841808 36 100.0 34 TTCTGTATGT .................................... ATGCGTGCCCGCACGCCTGCACGTTGCCACCTTG 841878 36 100.0 34 TGCCACCTTG .................................... TAACATTGCATTAGAACAACTCTACGTGGACATC 841948 36 100.0 34 CGTGGACATC .................................... AAATAGCCCGTCGCCAGGCGATGGTATCACGAAT 842018 36 100.0 36 TATCACGAAT .................................... TAACCGATTTCAGGTTACCTTTATAGCATATAACAA 842090 36 100.0 34 CATATAACAA .................................... ATCTCGAATTACAAGGTAGACCCATGGGGTCTAT 842160 36 100.0 34 TGGGGTCTAT .................................... CCAATACGTTGGTCACGTAAAGTACGGATGTGAG 842230 36 100.0 34 CGGATGTGAG .................................... TACTTTTTCCGTAAAGGAGCTGCTTACAGAACTG 842300 36 100.0 33 TACAGAACTG .................................... AACTAAAAGAGGGCCCCCCTAAAATCTCTTAAA 842369 36 100.0 34 ATCTCTTAAA .................................... AATCTATAGGGAAGGTAAATCTTTACCAGATACT 842439 36 100.0 34 ACCAGATACT .................................... AAGGTTTCCATCCTCATAGAATGGAAACAAGCGG 842509 36 100.0 34 AAACAAGCGG .................................... AGATGAGGTATTGGTGCTTAAAGGGCACCCGCTT 842579 36 100.0 36 GCACCCGCTT .................................... AGGAAGAGTCGAACAACAAATTTCAAAAAATTGTAA 842651 36 100.0 35 AAAATTGTAA .................................... TGTGGTGACTTGAGTGGCACCACTATTAGCCGCAA 842722 36 100.0 34 TTAGCCGCAA .................................... GGGGGCAGAGTTGCAGATGTTGATATTCACGCTG 842792 36 100.0 33 ATTCACGCTG .................................... GAGGACTTGAGTTGTCCCCTGTGCACAGTCGAA 842861 36 100.0 35 CACAGTCGAA .................................... AACTTCTCCAGCTTGTGCTCTATCTCTATATGATG 842932 36 100.0 35 CTATATGATG .................................... TCTCAAATGTAGTGCCCCTTCCCACAAGATTTATT 843003 36 100.0 34 AAGATTTATT .................................... TGTACCGTCCTTCCATGCTGCAAATCATTAACAG 843073 36 100.0 34 TCATTAACAG .................................... TCATAAGGTTGATCTCATGTTCTAACCAGGTTAC 843143 36 100.0 36 ACCAGGTTAC .................................... ACCCCAAAATTCCATCTGAACGATAAATATTTTTTC 843215 36 100.0 36 ATATTTTTTC .................................... CGTGTAACCTAATTATCAGTCATTCAGTCTCACATT 843287 36 100.0 GTCTCACATT .................................... TAAAAATCGG ========== ====== ====== ====== ========== ==================================== 31 36 34 GTTGCCATACCCTTCTATTTTCGGGTCACTTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.00,-4.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [299,107] Score: 0.18/0.18 # # Final direction: F [0.45,0.37 Confidence: LOW] >NC_007796 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 844463 36 100.0 32 AAGGTTGTAA .................................... TGCAATACTACCATATCCACCAAATACTCTAA 844531 36 100.0 35 AATACTCTAA .................................... TTTGTATTATATCATCGAGTAAAAAACTTGAAACA 844602 36 100.0 32 ACTTGAAACA .................................... TTAAATGGTGAACAGTATAATTGACGAAAAAT 844670 36 100.0 35 GACGAAAAAT .................................... CCACCAACCGTTATATTCCTTATGATTCATTTTTA 844741 36 100.0 34 TTCATTTTTA .................................... TAAAGAAGCCTACCGATACAGGAGGAAAGATAAA 844811 36 100.0 34 GAAAGATAAA .................................... TGAAAAACACTCCCCCGTCAGAACCCGCCGTTCG 844881 36 100.0 36 CCGCCGTTCG .................................... AACGACAGCCTGTTCTCCTGTATCACTGGTGATGAT 844953 36 100.0 TGGTGATGAT .................................... CGCCACTTTTT ========== ====== ====== ====== ========== ==================================== 8 36 34 GTTGCCATACCCTTCTATTTTCGGGTCACTTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.00,-4.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [51,245] Score: 0.18/0.18 # # Final direction: R [0.27,0.55 Confidence: MEDIUM] >NC_007796 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 852896 36 100.0 34 TTATGAGTTA .................................... TGGTACTTGTTCAACCCAATAACGGGTATGGTGG 852966 36 97.2 34 GGTATGGTGG .........................A.......... CTACCCAATATTAACCTCATACATCTGTATACCA 853036 36 100.0 34 CTGTATACCA .................................... TATGTAGATCATTATGGTGATATATCGAGTGTAA 853106 36 97.2 35 TCGAGTGTAA .....................A.............. AAGAAAACCCCACATTAAACATTTACATAGATGTA 853177 36 100.0 35 CATAGATGTA .................................... ATTTTAGGGTGACTTGTAACTTACAAAGGTCAGTG 853248 36 100.0 33 AAGGTCAGTG .................................... AGGGTAGGTATGGCACATTATGGACCGATTATA 853317 36 100.0 34 ACCGATTATA .................................... ACGTAAGGATGAGTGATTATGGTACGGATACAGA 853387 36 100.0 34 CGGATACAGA .................................... ATTAGATAGAGCCACATTACATGAGGTCTATTAT 853457 36 100.0 35 GGTCTATTAT .................................... AGGGAATGTTCGAGAAATGAAATAGAAACAACGTC 853528 36 100.0 35 AAACAACGTC .................................... TAACATGCTTGACAAAATAGTGGAATGATTTCCTG 853599 36 100.0 33 TGATTTCCTG .................................... TGAACTCATGGAGCTTATCCGATTTCTGGATAA 853668 36 100.0 34 TTCTGGATAA .................................... CAGGTGCTGCACAGGGCAACTGGTGGTATCAGGA 853738 36 100.0 33 GGTATCAGGA .................................... GTTAATGATACGTTCTGCGATTTGTGCGGTAAA 853807 36 100.0 34 GTGCGGTAAA .................................... TGTGTACTCGCGTTTCCATTTGCCGTCTGTCCCG 853877 36 100.0 33 GTCTGTCCCG .................................... ATAATGGATCATGTTATGTTCCCGCCTTTCATG 853946 36 100.0 34 GCCTTTCATG .................................... CTCAAAATAACCCATAATGAGATCTTTGATTCTG 854016 36 100.0 33 TTTGATTCTG .................................... ATAATGGATCATGTTATGTTCCCGCCTTTCATG 854085 36 100.0 34 GCCTTTCATG .................................... CTCAAAATAACCCATAATGAGATCTTTGATTCTG 854155 36 100.0 34 TTTGATTCTG .................................... GAACTGGCAGAATAATGATCCAGCCCCAGTATGT 854225 36 100.0 36 CCCAGTATGT .................................... ATCTCACTCTCTTATAAGTGAGATGAATGAGGATGA 854297 36 100.0 34 ATGAGGATGA .................................... AAGAGTCTAATGAGAAGTATAAAAAAATTGTAAA 854367 36 100.0 34 AAATTGTAAA .................................... CAGGTGCACAACCTGATGGAAGAACAGAGGGAAA 854437 36 100.0 35 CAGAGGGAAA .................................... AGGTTGCTGCAGGTGTTATAGATCTCCCTGATGTA 854508 36 100.0 37 CCCTGATGTA .................................... CTGCCTCCGTTGGTGCTGCAAGGCCCTGCATGAGGTT 854581 36 100.0 35 GCATGAGGTT .................................... TACATTCTGCTTTTAGGTTGGAAAGGGGCTTCCAA 854652 36 100.0 35 GGGCTTCCAA .................................... TATATCACACTAAAGTAAAAAACAGATGAAATCAG 854723 36 100.0 34 ATGAAATCAG .................................... AGCCACACGCGGTCCTATCCTGTAACCTGATAAC 854793 36 100.0 36 ACCTGATAAC .................................... CGTAAGACTGCGTAAACATGACGTAACTATATCCGT 854865 36 100.0 34 CTATATCCGT .................................... TTACACTTGACGAGATTGAAGCCGCTAAGGACTT 854935 36 100.0 36 CTAAGGACTT .................................... GAAATACCACAAAGGAGCGTGGTTAGATGATGCCCC 855007 36 100.0 35 ATGATGCCCC .................................... TTTAAAGCGCGCCGAAATTGAGGCGCAGTATAAGA 855078 36 100.0 34 CAGTATAAGA .................................... TATTAAAGATGAAATAAAAATTCTATTGTATTAA 855148 36 100.0 33 ATTGTATTAA .................................... ATTCTAGAGGGCTTCTGATTATCCTCAAAGCAT 855217 36 100.0 34 CTCAAAGCAT .................................... TGCGTATGACAAGTTAACCTTATTAAACGCTAAG 855287 36 100.0 35 AAACGCTAAG .................................... AAATCAGATACTAGAATAACTATATGGTAAATATC 855358 36 100.0 33 GGTAAATATC .................................... CCCGATTGAGCTCGTACAAGCGGGCGCGGGCGT 855427 36 100.0 GCGCGGGCGT .................................... CGCCACTTTT ========== ====== ====== ====== ========== ==================================== 37 36 34 GTTGCCATACCCTTCTATTTTCGGGTCACTTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.00,-4.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [58.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [176,291] Score: 0/0.18 # # Final direction: R [0.27,0.78 Confidence: MEDIUM] >NC_007901 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 109571 29 96.6 33 TGAACACTCT -............................ TGTGGCGCGACTCGTACTGATCTGATCAGTAAC 109633 29 100.0 33 GATCAGTAAC ............................. AAACGCTGGGTCGCCAGGGCGGCTTGATACTTC 109695 29 100.0 33 TTGATACTTC ............................. GCGATTTCAGAACCTCATCAAGACAGGTTTTCA 109757 29 100.0 33 CAGGTTTTCA ............................. CACAACCGCATCACAGTGACTGGCGCCTATTAC 109819 29 100.0 33 CGCCTATTAC ............................. GACAACCTGTACTGGCTTGGGACCAAGCCCAAC 109881 29 100.0 33 CAAGCCCAAC ............................. TTGGACACTTGACCTGTGCCTCTGTACCTTACC 109943 29 100.0 33 GTACCTTACC ............................. CTCAGCTGCATGCCTCAATAGAGTTGCCATATC 110005 29 100.0 33 TTGCCATATC ............................. CGCAGTGTCCACCAAAGGGATGATCTTGCCTAC 110067 29 100.0 33 TCTTGCCTAC ............................. AAACAGCGTGACTGCCAATTGGATATTGTCGAC 110129 29 100.0 33 TATTGTCGAC ............................. TTTGTGGTCATCGCCGTCCCTCTTCCAACACCC 110191 29 100.0 33 TCCAACACCC ............................. CCACAAAACTTTCAACAGTCACATCATCATTCA 110253 29 100.0 33 TCATCATTCA ............................. CCTCGCCAGTTCTCTGACTTCCTGCACAGCTAC 110315 29 100.0 33 GCACAGCTAC ............................. AGAAGAAAAGTTGGGATCGGCGAACACAATGTC 110377 29 100.0 33 ACACAATGTC ............................. GGCTTTCGCGTGTTCTTACGCCCATCGGACTCC 110439 29 96.6 33 ATCGGACTCC .........................A... TATGCAGGTGTCTACGAAATCGACCACACGTTC 110501 29 100.0 33 CCACACGTTC ............................. ACGGCGTTCTGTTGAATTATCACGAGGCATATC 110563 29 96.6 33 GAGGCATATC ..............G.............. CGCTGTGGTTTCAGCAGGACCGGTGGCGCATCC 110625 29 86.2 36 TGGCGCATCC ......................A...--- AACGCCATGGCGAAGCATGTGGACGGTGCTGCCCTC 110690 29 96.6 33 TGCTGCCCTC ......A...................... CGTGGCCAAGAACCGTTGCGCCACCAGTCTAGC 110752 29 100.0 33 CCAGTCTAGC ............................. GCCTGCAACCGGGTAACCACTGGCTGCCATTAA 110814 29 100.0 33 CTGCCATTAA ............................. CTTTGGCGCGTGACAAATAGGCGGAAAGATTGC 110876 29 100.0 33 GAAAGATTGC ............................. GAAGTAGTTGTGAAGAATGGATGGCTCGATTTC 110938 29 100.0 33 GCTCGATTTC ............................. GGCGTTTCTATATGGTGTGTCGACTGGTTTTAC 111000 29 100.0 33 CTGGTTTTAC ............................. CTCAACCCGGCCACAGGACTCTTTGGTGTCTTC 111062 29 100.0 TGGTGTCTTC ............................. TCTGACATCT ========== ====== ====== ====== ========== ============================= 25 29 33 CTTCAATCCCCGCGCAACGCGGGGCGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-13.70,-13.70] Score: 0/0.37 # Array degeneracy analysis suggestion: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [39,278] Score: 0.18/0.18 # # Final direction: F [0.78,0.18 Confidence: MEDIUM] >NC_007907 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 3142467 30 96.7 34 CTCGAATCAT .........T.................... GATAGTTCGCGGAGGGCTTCGGCGTAGGTTTGGG 3142531 30 100.0 36 TAGGTTTGGG .............................. GATCTGTTCATCGGCCAGTAGAACAGTAGTTTCGAG 3142597 30 100.0 38 TAGTTTCGAG .............................. TATACCCGGGCAGGCCATACGGCGTTTCTGGGGTCAAT 3142665 30 100.0 36 TGGGGTCAAT .............................. TTTCCCAATCACCCGTAAACACTCCGATTACAAAAT 3142731 30 100.0 36 ATTACAAAAT .............................. TGATCGATGCCAATGGGTATTTACTGCCTTGGTATA 3142797 30 100.0 35 CCTTGGTATA .............................. GAAATTTGCTGCACTGTACTTAGGAGGTGATAAAT 3142862 30 100.0 37 GGTGATAAAT .............................. TGATATGGTCCCATTCTGGTTATCGTCGATTACGGAG 3142929 30 100.0 36 GATTACGGAG .............................. TCAGGGCTTCCGCACTCATTTTAGCCACCCCTGCAT 3142995 30 100.0 37 ACCCCTGCAT .............................. CAATTGCGGGAAGTTCCCATGTCGTTATCATTTCGCC 3143062 30 100.0 35 TCATTTCGCC .............................. GAATTCCTTTTGCTCAGGTTGATTAAGTATTTCCT 3143127 30 100.0 37 AGTATTTCCT .............................. TAAGGAGGGCTTTGCCGATGTTGATGGTGTTTATTGA 3143194 30 100.0 39 TGTTTATTGA .............................. TAGGAGGTGCATTGATTTGCACAAGGAAGAATTTGCATT 3143263 30 100.0 36 AATTTGCATT .............................. ATGCGGGAGAATAGGGGAGTTGTGTTGGAATGAAAA 3143329 30 100.0 33 GGAATGAAAA .............................. CGACAATGCAGTGTTGCAGGAACTGGCAGTTGC 3143392 30 100.0 35 TGGCAGTTGC .............................. ACATCCACGACATCAAGCAAGGCGCCTACTTCAAC 3143457 30 100.0 35 CTACTTCAAC .............................. TGTTATGATGAGTAAAAAATGTCGGAGTATTTATT 3143522 30 100.0 40 AGTATTTATT .............................. CCGGAGAAAAGCTTCTTTTCGCCACTGACACCTACTATCT 3143592 30 100.0 36 CCTACTATCT .............................. GGAATGGAGATTTGGTAAGGAGTAGATAGTAATGAG 3143658 30 100.0 TAGTAATGAG .............................. CCATTTCGCC ========== ====== ====== ====== ========== ============================== 19 30 36 GTTTCAATCCCTCATAGGTAAGCTAACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [317,197] Score: 0/0.18 # # Final direction: R [0.27,5.28 Confidence: HIGH] >NC_007907 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 3135015 30 93.3 36 TTAATGTATT ............C........A........ TATCTTCTAGGGCTGAGACGGAGACTGGAGTCGCAT 3135081 30 96.7 35 GGAGTCGCAT ............C................. GGAAAACGCCTTGAGGGTCTTAGTGAGCTAACGCT 3135146 30 96.7 35 AGCTAACGCT ............C................. TCCGTCTTCGTCGCTCCATTAGGCAGCGCATTGAC 3135211 30 96.7 36 GCGCATTGAC ............C................. GAGGGAGACGAATAACTTAACCGCATTATCAGAGAT 3135277 30 96.7 34 TATCAGAGAT ............C................. CTGCGCCCCAATCCTTGCCCGTCTTTTTCAGCAG 3135341 30 100.0 36 TTTTCAGCAG .............................. TAGATTTGTTATGTCTTCCTGAGATACATTCCCTGA 3135407 30 100.0 35 CATTCCCTGA .............................. TAGAGAGATTGATATTGAAAGGGATGGAATTTATA 3135472 30 100.0 36 GGAATTTATA .............................. CTGCTTATATCCGAGTGATTTAGTCAGGATAGAACA 3135538 30 100.0 36 GGATAGAACA .............................. TTTTAAAAAGAAAGAAGGAATTGAGATGACTAAAAT 3135604 30 100.0 36 TGACTAAAAT .............................. ATGAATAGTTGATGAAAGGAGAATTTGATATGAAAG 3135670 30 100.0 36 GATATGAAAG .............................. TAAATGATGAGACTGGAGAAATTAAGGTAAAAAACA 3135736 30 100.0 36 GTAAAAAACA .............................. TTACTGTGGTTGTAGCCTTAACTGCGGCCTTCCTTA 3135802 30 100.0 35 GCCTTCCTTA .............................. GCTTCATCTCCGTGATCCCTGCCTGAGACAAGAAG 3135867 30 100.0 35 AGACAAGAAG .............................. TATTGATAGCAGAGAAGTTAATTTTACTAGTGGAG 3135932 30 100.0 35 ACTAGTGGAG .............................. TTAGTATGTACTCCAACTTCCGTACTCCCTCCTCA 3135997 30 100.0 35 TCCCTCCTCA .............................. GGATACAAGGCCATGATTATTATGACCACATTACA 3136062 30 100.0 35 CCACATTACA .............................. AAAGAGGCTAGTCATTTATTTGAGGTTGAAGTAGA 3136127 30 100.0 35 TTGAAGTAGA .............................. AAAGAAAGAGCAATTAAATCACTTGAAAAACTTAA 3136192 30 100.0 35 AAAAACTTAA .............................. GAAAGAGGTTGAATAATTATGCTAGAAAAAAATTT 3136257 30 100.0 38 AAAAAAATTT .............................. AAGAGGATTGACTAGGTTAGGCATAAACATTAAGTGTA 3136325 30 100.0 37 ATTAAGTGTA .............................. CTACGACTGATTTCTTCCCAAATTCCTTATACTCAAG 3136392 30 100.0 35 TATACTCAAG .............................. CATGCCCCATGCAAAGGTCATGGAGGCGATAAAGG 3136457 30 100.0 36 GCGATAAAGG .............................. CCTTGCCTTTAATGACTGCCTCTTTGCCAAGGTTTT 3136523 30 100.0 39 CCAAGGTTTT .............................. AGGCCAATTTTCCTGTATCTTTCCATGGTCTTCCCATAT 3136592 30 100.0 38 CTTCCCATAT .............................. TGGGGAGCCAGTGTACGTAGTTGACGTCAGTGAGCAAG 3136660 30 100.0 AGTGAGCAAG .............................. CCATTTTTCC ========== ====== ====== ====== ========== ============================== 26 30 35 GTTTCAATCCCTTATAGGTAAGCTAACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [133,146] Score: 0/0.18 # # Final direction: R [0,5.28 Confidence: HIGH] >NC_007946 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 886538 28 100.0 32 NNNNNNNNNN ............................ TGACGCCATATGCAGATCATTGAGGCGAAACC 886598 28 100.0 32 NNNNNNNNNN ............................ ACGTTCGCACCGGTCAGGGTACTGCGCAGCGT 886658 28 100.0 32 NNNNNNNNNN ............................ GAAACCAGAGCGCCCGCATAAAACAGGCACAA 886718 28 100.0 32 NNNNNNNNNN ............................ GCCAGCATAAAACCGCCTTTGATATTTTATTG 886778 28 100.0 32 NNNNNNNNNN ............................ TCAGCCGGAGGCTCTCAATTTCAGCCGCGCGG 886838 28 100.0 32 NNNNNNNNNN ............................ AGCACGGCTGCGGGGAATGGCTCAATCTCTGC 886898 28 100.0 32 NNNNNNNNNN ............................ TGATGGCGCAGCAGTCCTCCCTCCTGCCGCCA 886958 28 100.0 32 NNNNNNNNNN ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 887018 28 100.0 1 NNNNNNNNNN ....................TA.TC.C. NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 9 28 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [214,174] Score: 0/0.18 # # Final direction: F [1.65,0 Confidence: HIGH] >NC_007907 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 3145380 30 100.0 38 TGGCATTCCT .............................. TTCCTTTTTGGCTGCGTAGGAAACATATTTTTTCAGCT 3145448 30 100.0 39 TTTTTCAGCT .............................. TTCGTCCTATATCAAACGCTTCCCCATAATCCTTTTGCT 3145517 30 100.0 36 TCCTTTTGCT .............................. ATTGGCGCAGATCTGGGTTGTATTGGTTAAAGACGG 3145583 30 100.0 36 TTAAAGACGG .............................. TTTGGGCATGCTGCTTTATAGCGCGCTCTAAATCCC 3145649 30 100.0 35 TCTAAATCCC .............................. TTTAGCAGGGAGATTGGGGGGCGTCAAAGATGTGC 3145714 30 100.0 37 AAAGATGTGC .............................. ATATTGGTTTTTAGAATATCGGGACAATAGTTACACT 3145781 30 100.0 36 TAGTTACACT .............................. TTATCCCGGTGCTGATGGTTATGTTGAAGCATATCG 3145847 30 100.0 36 AAGCATATCG .............................. GCTGGCCTACGATCTTCATGTTGATTGGTATGACTA 3145913 30 100.0 35 GGTATGACTA .............................. TTGAATTCTTCACGCGCATTATCAATTTGTTCTTT 3145978 30 100.0 38 TTTGTTCTTT .............................. GATAATGTCGGGGTATCCGGTGGAATAGATGTGCATCG 3146046 30 100.0 34 ATGTGCATCG .............................. CGGCCCAGGAATCGGCCGCATGGTGGATCAAGAA 3146110 30 100.0 GGATCAAGAA .............................. CCATTTTACC ========== ====== ====== ====== ========== ============================== 12 30 36 GTTTCAATCCCTCATAGGTAAGCTAACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [48.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [863,188] Score: 0.18/0.18 # # Final direction: R [0.18,5.14 Confidence: HIGH] >NC_007946 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 896106 28 100.0 33 TATTATTCCA ............................ TGGATTCCAAACCGCCCACCAACAAAAACAGGT 896167 28 100.0 32 AAAAACAGGT ............................ GATACGATCGAATTTAGTCACTGAATACCCCC 896227 28 100.0 32 GAATACCCCC ............................ GGGTTGCGCAATGGGCTGGCCGACGAACGCGG 896287 28 100.0 32 ACGAACGCGG ............................ TGTGGCGCTGATGCGTCTGGGCGTCTTTGTAC 896347 28 100.0 32 GTCTTTGTAC ............................ GCGCGCAGTGCCTGATAATCAATTTTGCTCAT 896407 28 100.0 TTTTGCTCAT ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG ========== ====== ====== ====== ========== ============================ 6 28 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [542,174] Score: 0.18/0.18 # # Final direction: F [1.69,0 Confidence: HIGH] >NC_007907 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================== ====== 3151289 21 100.0 48 NNNNNNNNNN A..T.............T... GATAATTTGGGTTTTCTGAGCGCAAGATCACTGTTGAGCGTTTCAATC 3151358 21 100.0 47 NNNNNNNNNN ..................... TGGAGAGGTGTTATAATTTATCGGGGAACCCGTAAATGGTTTCAATT 3151426 21 100.0 45 NNNNNNNNNN ..................... TTATGAGATCCCTGGAACGGGACTCAAGCTCATCTTGTTTCAATT 3151492 21 100.0 46 NNNNNNNNNN ..................... TGTTCCCCCACTTGTTCTACATGTGTCGCAAGATCATGTTTCAATT 3151559 21 100.0 45 NNNNNNNNNN ..................... CGAAGGCACCTTTGGCACAGCCTCGACAGGACGAGCGTTTCAATT 3151625 21 100.0 47 NNNNNNNNNN ..................... CTCTTCGAGAGAGAAGAAGAAGGCGATATCCTTCTCCTGTTTCAATT 3151693 21 100.0 44 NNNNNNNNNN ..................... TGCTTCCTCAAAGACGATCTCTTTGGTGAGCAGCTGTTTCAATT 3151758 21 100.0 46 NNNNNNNNNN ..................... CCTATTGCAGTCGGTGTTAGCCATTTAGTATTACCTGGTTTCAATT 3151825 21 100.0 43 NNNNNNNNNN ..................... GTGTTGAAAAAGCAGTATTGGACAGGTGGGAGATGTTTCAATT 3151889 21 100.0 45 NNNNNNNNNN ..................... TAGGATGTCCTGAATACGAAGAGCTGCTGATTCATTGTTTCAATT 3151955 21 100.0 49 NNNNNNNNNN ..................... ATTCAGAGCATCAGAGTAGAGCGGCTATGGGACATAACCAGTTTCAATT 3152025 21 100.0 46 NNNNNNNNNN ..................... AAAAGGTCCAGCTCATTCGGCAGCTCAGAAAAGATCTGTTTCAATT 3152092 21 100.0 45 NNNNNNNNNN ..................... TGGTCACGCCAGGGATAACCTCCCCGCTGTCTTGGTGTTTCAATT 3152158 21 100.0 44 NNNNNNNNNN ..................... TAACCCTGATTTAGACTTAGTAGCGGCCCTGAGCGGTTTCAATT 3152223 21 100.0 48 NNNNNNNNNN ..................... AACGTTTGAGGAAATAGAGCTAATGCAATTCACAGGACTGTTTCAATT 3152292 21 100.0 44 NNNNNNNNNN ..................... GCAAAAGGACAAGCTAAATTTCGTCTATGTTACCTGTTTCAATT 3152357 21 100.0 44 NNNNNNNNNN ..................... TCAATGCTGGTGATGTACCTTGCGGCATGAGGATAGTTTCAATT 3152422 21 100.0 45 NNNNNNNNNN ..................... GTGGTGGGAAGAGGAATAGACGAATTGAGGTGACAGGTTTCAATT 3152488 21 100.0 45 NNNNNNNNNN ..................... CAAGCCTATTTATGAAACACTGGATCCCCGGGCCGAGTTTCAATT 3152554 21 100.0 44 NNNNNNNNNN ..................... GCAATATCCTTTGTGTTTGCATTGGCATCCTCGAAGTTTCAATT 3152619 21 100.0 45 NNNNNNNNNN ..................... ACACCGGCACGGACAGAATGAAGCGAGCCGTTCTCAGTTTCAATT 3152685 21 100.0 46 NNNNNNNNNN ..................... GTGCGGTACTGTCATATTGTTCAGCTCCTCTTTAATAGTTTCAATT 3152752 21 100.0 45 NNNNNNNNNN ..................... CGACTCCATTGATAGGACCATGTACAGCTTATATGTGTTTCAATT 3152818 21 100.0 45 NNNNNNNNNN ..................... TCCAGCCGAGGAGCCGTTTAAGGTGACTTTTCATAGGTTTCAATT 3152884 21 100.0 46 NNNNNNNNNN ..................... GGGGAGCAGTTGGCGCTGTGTCAGAGGTATCTAACATGTTTCAATT 3152951 21 100.0 46 NNNNNNNNNN ..................... CCTCTGCGGTCCCGTGGATGGGAGTCCATCCGGAGTTGTTTCAATT 3153018 21 100.0 45 NNNNNNNNNN ..................... TAGGCATTCGCCCTACTTGCGGATCTCTCCCATGGGGTTTCAATT 3153084 21 100.0 45 NNNNNNNNNN ..................... ATGGGGGCTTGCCTTATCACTTCCGGGTAGTGACCTGTTTCAATT 3153150 21 100.0 45 NNNNNNNNNN ..................... TTTTGGCCACATCTGCAGCGGCCACTTGAGGATAGAGTTTCAATT 3153216 21 100.0 45 NNNNNNNNNN ..................... ATTGCCCAGGTATCTCAATGGGAAGAAATGGTGGCTGTTTCAATT 3153282 21 100.0 44 NNNNNNNNNN ..................... AATTGCTTGCTTCGCTGAGGTGTTGTTAAATTGGAGTTTCAATT 3153347 21 100.0 45 NNNNNNNNNN ..................... CAAAACAGTATGCGGTATGTATCTATGTCCACGGAAGTTTCAATT 3153413 21 100.0 46 NNNNNNNNNN ..................... GCGATGGTCAATTGGAGATAATAAGGGGCAGAAATAGGTTTCAATT 3153480 21 100.0 45 NNNNNNNNNN ..................... CAAGCTTAACAGCGAAAGTGAAGTAGAGGATCCTGAGTTTCAATC 3153546 21 100.0 47 NNNNNNNNNN ..................... CTTTGGTTGACTTAGGTTATGACGTGTAACCCTTGGTAGTTTCAATC 3153614 21 100.0 46 NNNNNNNNNN ..................... CCGAAGCATTTACATAAGGAGGCGTTACCTTGGCAAGGTTTCAATC 3153681 21 100.0 45 NNNNNNNNNN ..................... GTGGCTTACCGAAGAAAAGACCGGGCTTGGTGTGAGGTTTCAATC 3153747 21 100.0 46 NNNNNNNNNN ..................... CATTCACCCAGCCCTTTCAGGATGTCTAGGTTTCGGAGTTTCAATC 3153814 21 100.0 45 NNNNNNNNNN ..................... GGTCTGAGATAGGTGTTGTCCCCAGTTTGTCCCCAAGTTTCAATC 3153880 21 100.0 47 NNNNNNNNNN ..................... CTATAGAAAGCCGTACTACTTGGACATTCCATTCCACTGTTTCAATC 3153948 21 100.0 45 NNNNNNNNNN ..................... ATTATTACAATGGATATATTTTTCTGTATTATTTTTGTTTCAATC 3154014 21 100.0 45 NNNNNNNNNN ..................... ACTTCTGATACGAAGAATTTTCCATCCTTGAGATTTGTTTCAATC 3154080 21 100.0 46 NNNNNNNNNN ..................... TATTACACTCTCTTTTCTAATAAAACTCTTATTAATTGTTTCAATC 3154147 21 100.0 44 NNNNNNNNNN ..................... ATTGTACAGTTCTAGATCATTCTGATTATCAAGATGTTTCAATC 3154212 21 100.0 45 NNNNNNNNNN ..................... TTATATCCCATGTATATTCCATCGGAAAAAACATTGGTTTCAATC 3154278 21 100.0 46 NNNNNNNNNN ..................... ACAGATAGAATTGTTTGACCTATATAGACCTTATCGTGTTTCAATC 3154345 21 100.0 45 NNNNNNNNNN ..................... CATATTTGTTTACTAGCAAAGAATGAAAATGGAAGAGTTTCAATC 3154411 21 100.0 1 NNNNNNNNNN ..................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================== 48 21 45 CCTCATAGGTAAGCTAACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:57.14%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [56.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [425,409] Score: 0/0.18 # # Final direction: R [0,0.68 Confidence: HIGH] >NC_007907 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 3179216 30 100.0 37 AAATTCTGGA .............................. AAGTTGCCGATGCCATGAAAGAATTTAATATCCGCAT 3179283 30 100.0 38 ATATCCGCAT .............................. GGTTACACTAGTTACGCTTGGAGTGCCGGGCACAAAGA 3179351 30 100.0 38 GGCACAAAGA .............................. CATCTTCATTCATCTGAAGGTCGTTTTTGGCCATTCCC 3179419 30 100.0 37 GGCCATTCCC .............................. TTCCGAACACATTGAGACGAACCGCGCTGGGTCTTGA 3179486 30 100.0 35 TGGGTCTTGA .............................. TCGGCTAATCTGGCGTTTATGGACGCGATTTTCCG 3179551 30 100.0 35 CGATTTTCCG .............................. AATGTTCTGACTTGTAAGGTAGGGCCCAAAAGCTC 3179616 30 100.0 38 CCAAAAGCTC .............................. GTAGGGATGGTTGGCGATAAGTTGTCAATCGTGGACAT 3179684 30 100.0 39 TCGTGGACAT .............................. CGCAGCAACAACAAGACCGCATCCACCCCACTCAAAAGC 3179753 30 100.0 36 ACTCAAAAGC .............................. CACGCCGTTCTTGTCGCAGAGTCCCGTAAATTGCAT 3179819 30 100.0 36 TAAATTGCAT .............................. GGGATGAGTCGCGACTTTACAAACTGGTTTAAGTAC 3179885 30 100.0 36 GTTTAAGTAC .............................. CAAGTGCGGGTGATAAATGCGATCACCTTGGCAGAG 3179951 30 100.0 37 CTTGGCAGAG .............................. GATGATCAGGAAGCCGGCGTTATCGAGTATCGAAACA 3180018 30 100.0 35 TATCGAAACA .............................. GTATAGAGACTTTCCAGCCCCATTGACCTCTGCGG 3180083 30 100.0 39 ACCTCTGCGG .............................. TATGACGCTGGACGAGATTAAGCAAGCTTGGAAAATGAG 3180152 30 100.0 39 GGAAAATGAG .............................. GGTACCAGAACCAATGCACCACCGTGAGGGCGCGATCAC 3180221 30 100.0 36 GCGCGATCAC .............................. TGTATACTTTGCCCTATTCAAAACATGCCGAAAGAT 3180287 30 100.0 35 GCCGAAAGAT .............................. AACCCATGAAAGAAGGGGCAGAATTAAAATCTCCT 3180352 30 100.0 37 AAAATCTCCT .............................. GCGATAGCTACCGATACCGGCAGCAGTACAACGAATA 3180419 30 100.0 35 ACAACGAATA .............................. GTTGGGAGGGAAGAAGGCATGAGTGCAAAGTTTGA 3180484 30 100.0 37 CAAAGTTTGA .............................. CTTACCCCTTTGGCATCCACTTCACCGTTGGAGAATT 3180551 30 100.0 35 TTGGAGAATT .............................. GTTGCCCGGAATCTGCAGACCATCATAAAGCTGGG 3180616 30 100.0 36 TAAAGCTGGG .............................. CTACACGAACTGAAAGTACACGGTCTACCTTCACAG 3180682 30 100.0 37 ACCTTCACAG .............................. TATGTCGATTAGCTGACTTGTGTAGATCCCCTCTTTG 3180749 30 100.0 35 CCCCTCTTTG .............................. CATGGCGCTCCCTAAATCCAAATACCGGTACTGCT 3180814 30 100.0 35 CGGTACTGCT .............................. GGTCTCCTGAGCGATATAATCCGTCATATCCCGGG 3180879 30 100.0 35 ATATCCCGGG .............................. TGATAGAGTTGTGGATTTTCAACCCGGGGATGGGT 3180944 30 100.0 36 GGGGATGGGT .............................. CACCATCCACGGCGATCTCCGGAATGGGAACTGCAG 3181010 30 100.0 36 GGAACTGCAG .............................. AGGCATCAGCGCAACTTCATCAAACAGAATCCCGGC 3181076 30 100.0 37 GAATCCCGGC .............................. CAATGCGCTTTTTAGCGCAGGAATACTATGATAACGG 3181143 30 100.0 35 ATGATAACGG .............................. TCAAATCTGCGCTACAAGTCTCACACGGATCCCCG 3181208 30 100.0 36 CGGATCCCCG .............................. CAAGCCAACCCTCCTTAAGCCGGGGGCAGAGAAGCT 3181274 30 100.0 36 CAGAGAAGCT .............................. AATACTGGACTACATCGGCAGACTGGATCGGACAGA 3181340 30 100.0 37 ATCGGACAGA .............................. GGCCAAGAGTGGAAAGAGCTGCAGCATAAAACTTACT 3181407 30 100.0 37 AAAACTTACT .............................. TAGATTGACTGGAGGGAAAGAGAATGAGCCGTGAGAT 3181474 30 100.0 36 GCCGTGAGAT .............................. GTGGCAAAAGCTGAGAGCAGACGTATTGGATGAGTA 3181540 30 100.0 36 TGGATGAGTA .............................. CGGTTCATGGCGGCTCGCGCGCCGCTTTCGGTTTTA 3181606 30 100.0 35 TTCGGTTTTA .............................. CGATTCAACCTCCCGAAAATTAGTAAGGCAACAAT 3181671 30 100.0 36 AGGCAACAAT .............................. GAGGAATTGGTGACTGTTTATCCCTCGGAGGATCAG 3181737 30 100.0 36 GGAGGATCAG .............................. TTATAATCAGGTTCACCATACCCCAGCTCTTCAAAC 3181803 30 100.0 36 CTCTTCAAAC .............................. TTTTTCATTTATTATATTTTACTAGTTAACTAGTTA 3181869 30 100.0 37 TAACTAGTTA .............................. CTTACACAAATATCCTCACTTTCTCCAGATTAGCTTA 3181936 30 100.0 36 GATTAGCTTA .............................. TTGGTTCATGATAAATTATACATTTTTTGTTTTCAT 3182002 30 100.0 35 TTGTTTTCAT .............................. TAAGACTTCTTTTCTTGTTTTAAGATTGTTCACAT 3182067 30 100.0 37 TTGTTCACAT .............................. GAAGAAAATCATAGAGTAACTGAAACCGGAGAATTAC 3182134 30 100.0 GGAGAATTAC .............................. CCATTTTACC ========== ====== ====== ====== ========== ============================== 45 30 36 GTTTCAATTCCTTATAGGTAAGCTAACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [180,639] Score: 0.18/0.18 # # Final direction: R [0.27,5.05 Confidence: HIGH] >NC_007908 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 4365457 37 100.0 35 NNNNNNNNNN ..................................... GAGAAAACCGGGCGCCTGGGTTTTGACGGCCCCGC 4365529 37 100.0 34 NNNNNNNNNN ..................................... TCGCTCGAAGGTATTGACACGACGCTGACCACGA 4365600 37 100.0 33 NNNNNNNNNN ..................................... TAGCGTAATCGAGCTAGATGCTGGAATACTTAA 4365670 37 100.0 36 NNNNNNNNNN ..................................... AAGTTCATCTACCTTATGTCAGATCGCCCAGATGGG 4365743 37 100.0 34 NNNNNNNNNN ..................................... CGATCGTTGGCCCCCTGCTGGCACCAGAGGCGGC 4365814 37 100.0 35 NNNNNNNNNN ..................................... GGTGCGGTCAAGATCGGGCAGCGTGACCCAGTCGG 4365886 37 100.0 35 NNNNNNNNNN ..................................... TCCCCCTTATCAACGCTTCGCGGCGCGACCTGGCG 4365958 37 100.0 35 NNNNNNNNNN ..................................... AAGTCTGATCTATCCCGCCTGGCGCGTGCATTCCC 4366030 37 100.0 34 NNNNNNNNNN ..................................... AATGCGACGGTGTTTGGCGACACCATCTATCTGG 4366101 37 100.0 35 NNNNNNNNNN ..................................... AGTCAATATCTTGTCGGTCACCGCCAGTTCGATAG 4366173 37 100.0 34 NNNNNNNNNN ..................................... GACTTCGCCGTCAACTCTGGTATCTCGACCGCAA 4366244 37 100.0 34 NNNNNNNNNN ..................................... ACTCCGCGGAATGCTTTGCGGAGCACGAAGCCTC 4366315 37 100.0 35 NNNNNNNNNN ..................................... TGGAAACTCGCCCAGCTCGGCGACAAGCCCTTGCG 4366387 37 100.0 35 NNNNNNNNNN ..................................... CTTACTTAAAGAACTCTCGGAGAATTCCATGAATG 4366459 37 100.0 35 NNNNNNNNNN ..................................... GCCGTGCTGGTGTGATCCAGACCAGTGAAGAGGCG 4366531 37 100.0 34 NNNNNNNNNN ..................................... ACTTCCAGCGCCAGAGCCAGCCAGCCATACGGGT 4366602 37 100.0 34 NNNNNNNNNN ..................................... CCGGTGGTGCGCCCGCGCAAGGTGTATGACCTGA 4366673 37 100.0 35 NNNNNNNNNN ..................................... AATCGTCGCGCTGCCCGTTGGCTTACGGTCGGAGC 4366745 37 100.0 34 NNNNNNNNNN ..................................... AGCACTGCCGGGCGTGTGGCCCGCGTCGCATAAC 4366816 37 100.0 35 NNNNNNNNNN ..................................... AGATGAAAAAACACTGAAACGATTTTGGTCGAAAG 4366888 37 100.0 35 NNNNNNNNNN ..................................... TGTTTGACTATCCCGAAGCCGACACGCGCATGCTG 4366960 37 100.0 34 NNNNNNNNNN ..................................... AGCGTGGTGTAAATCACAGCACGGCAAAACTCTC 4367031 37 100.0 34 NNNNNNNNNN ..................................... ATGCACATGGCGGCGGTGGGTCTTGTCACGCCTC 4367102 37 100.0 35 NNNNNNNNNN ..................................... ACCTTGGATTGCATGTAGGTCTGCACCTGATGCCC 4367174 37 100.0 35 NNNNNNNNNN ..................................... AGCGGCTTTCCTACCGCAGCCAATAACGGCAGCTT 4367246 37 100.0 34 NNNNNNNNNN ..................................... ATCGTCAAGGTGCCTGTGAGCCTGTTCCTGACAG 4367317 37 100.0 34 NNNNNNNNNN ..................................... CTTGTAGATGTCCAAGGGTGTCTTGCACGCGGGG 4367388 37 100.0 36 NNNNNNNNNN ..................................... GCACCGACTCGCGGCATTGTGCAAAAGGCACTCGGT 4367461 37 100.0 33 NNNNNNNNNN ..................................... AACTCAGGTGCAGACCGTCAAACAACTGGTGCA 4367531 37 100.0 34 NNNNNNNNNN ..................................... TACCAGGTTCCCGGCATGGATGCGCTATTGAGTT 4367602 37 100.0 33 NNNNNNNNNN ..................................... AAGCCACCAGTTGCGGCTGCTGACCGGCGTCAG 4367672 37 100.0 33 NNNNNNNNNN ..................................... GTGCAGATCGCCGCGCCGGTGGATTTTGCGATC 4367742 37 100.0 35 NNNNNNNNNN ..................................... TCCCCCTTATCAACGCTTCGCGGCGCGACCTGGCG 4367814 37 100.0 35 NNNNNNNNNN ..................................... TAGTCTCAACTGGTAATTGCGCCCCGTCATGGCTC 4367886 37 100.0 34 NNNNNNNNNN ..................................... ACAAAGGCGGCTACGCCCGTGTTGACGATTTGCA 4367957 37 100.0 36 NNNNNNNNNN ..................................... CCCTTAGATAAACTGTGATCGGTAGGCGTGCATTGC 4368030 37 100.0 34 NNNNNNNNNN ..................................... CTTTTGCGCAAGGGTCTGGACCATGGCAATGGTG 4368101 37 100.0 35 NNNNNNNNNN ..................................... AAGTCGGCGGATGAGGCTGGCATGGACCTGGACGC 4368173 37 100.0 34 NNNNNNNNNN ..................................... AAAGCACGCTAGCCAACTCGGTGCATGTTGATCG 4368244 37 100.0 36 NNNNNNNNNN ..................................... GCTCTTTTTCTTGATGGTGTTTCCCATGACTGAATC 4368317 37 100.0 35 NNNNNNNNNN ..................................... ACCCATCCCGCCCCACCACCAAGCGGTGAGCGGGC 4368389 37 100.0 35 NNNNNNNNNN ..................................... TTTTTTCGCCTTGCGTACAAGTCCCCGGCGGGCGG 4368461 37 100.0 35 NNNNNNNNNN ..................................... ATCGTAACCCACCGTTCCTGCGCCAGGTGCCGCCA 4368533 37 100.0 34 NNNNNNNNNN ..................................... ACATGCACCCTCTTTTCGTCCATGCGCTCCAGGA 4368604 37 100.0 34 NNNNNNNNNN ..................................... GGCAACAGTGGCTTGCAGCAGATCCAGGGTGAAC 4368675 37 100.0 35 NNNNNNNNNN ..................................... AAGGCGGCTTTGCAGCAGGCCGAGGATCAGGCGAC 4368747 37 100.0 35 NNNNNNNNNN ..................................... ACAGTTGCGGGGTGTCCTGCCACTGCGCCTTGATC 4368819 37 100.0 34 NNNNNNNNNN ..................................... AACGTTGACATTGCCGAGCAACTCAAGACGCAGA 4368890 37 100.0 34 NNNNNNNNNN ..................................... GATACAGCCAGCCGCAACGGAGAGCCATTTGAAG 4368961 37 100.0 34 NNNNNNNNNN ..................................... TTGGATGGCGTCACCCGCGCGCCAAAGATGAAAT 4369032 37 100.0 34 NNNNNNNNNN ..................................... GCACAAGACCCGCTGATCAAGATTGCGCACCTGA 4369103 37 100.0 35 NNNNNNNNNN ..................................... CATATAGACGGTGTAGGTGTCGGCGGCGGCGCCGG 4369175 37 100.0 35 NNNNNNNNNN ..................................... ACCATGGGTTTGTCGGGCGGCATCAGCTATGACCA 4369247 37 100.0 34 NNNNNNNNNN ..................................... GCGCAATGGAAGATGCGATCCAGCCTGGGTGCCG 4369318 37 100.0 35 NNNNNNNNNN ..................................... AACATCAGGGCGGCTTGTCTCTACGCCGGGAGAGA 4369390 37 100.0 35 NNNNNNNNNN ..................................... AATGTGTCTTTCACCATCAAGGCCGACCTGCAGGA 4369462 37 100.0 35 NNNNNNNNNN ..................................... TCCGATGCCATCGGAATGAACGGAAATCCCTCGGG 4369534 37 100.0 34 NNNNNNNNNN ..................................... CCGTGTGCTGTGCCACGCTGGACACTGATACCGC 4369605 37 100.0 34 NNNNNNNNNN ..................................... TTTTCCAACTTGGTGTGCGGCCGCGCCATGTTGC 4369676 37 100.0 34 NNNNNNNNNN ..................................... AGTCGTTTCCATATTGGTCCTTAGAAGTCGATGG 4369747 37 100.0 36 NNNNNNNNNN ..................................... GCTGACCCGGTGGACGCTGGCAAGATGGACGAGGTG 4369820 37 100.0 36 NNNNNNNNNN ..................................... GCTGACCCGGTGGACGCTGGCAAGATGGACGAGGTG 4369893 37 100.0 35 NNNNNNNNNN ..................................... GTGCGCATCACGGGATTGGCACGCGGCAACCATGG 4369965 37 100.0 35 NNNNNNNNNN ..................................... CAGCTTGTGATTTGCCCGGTGCCAGCAGGCGCATA 4370037 37 100.0 36 NNNNNNNNNN ..................................... AGCAGCGATCAGGTTGATATAAGCCTGGTCGTAGCT 4370110 37 100.0 36 NNNNNNNNNN ..................................... TTCGGTCAGAATCACCAAGCCGGCAGCCTTGGCAAT 4370183 37 100.0 34 NNNNNNNNNN ..................................... ACCAACCGCGGCGCCTGGGCGGCCATAACGCTGT 4370254 37 100.0 35 NNNNNNNNNN ..................................... TTCACCAGGCCATCCCCCGTGGGTAGTGTCTTGGG 4370326 37 100.0 35 NNNNNNNNNN ..................................... AAAAATAACAAAGGATAGCTATGTCGGATGGTCTT 4370398 37 100.0 35 NNNNNNNNNN ..................................... ATTTCACCCCTGCCTGAGTGAGAGGAAAGCACATG 4370470 37 100.0 35 NNNNNNNNNN ..................................... AAGCTGGGGGTGGGCAACGATGCAACCCCTGATTT 4370542 37 100.0 35 NNNNNNNNNN ..................................... GAACCCTAAGCTCGCCGAACAGATCCTGGCGGGCG 4370614 37 100.0 34 NNNNNNNNNN ..................................... AGAACCTGGTACACCGTGGCGGGGCCGTTGCTGG 4370685 37 100.0 35 NNNNNNNNNN ..................................... AAACGCTCGGCCAGCGCTATCTTGCGCATGCACTT 4370757 37 100.0 36 NNNNNNNNNN ..................................... CTTTGCCTGTAATAGCCTTCTTTAGCGCGGTAGGAG 4370830 37 100.0 36 NNNNNNNNNN ..................................... CTTGACCCATAGCTGGTCGCCGGGCTGGCCGTAGGG 4370903 37 100.0 36 NNNNNNNNNN ..................................... ACCGGCAATGGCCAGCTGATTCCGGCGCTGGACGCC 4370976 37 100.0 35 NNNNNNNNNN ............G........................ GTCACTGTCCCCTTGGTGAGGCAGTTTCGCCGTGG 4371048 37 100.0 51 NNNNNNNNNN ..................................... GTGAAAATCATGACCCGGCGCTCGATGATGGCGCGGATTGAAACGTGAAAA 4371136 37 100.0 1 NNNNNNNNNN TC..GA......GC..GATGAT............... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 80 37 34 GGATCGCCCGGCATTCATGTCGGGCGCGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [7,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-14.10,-9.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [227,103] Score: 0.18/0.18 # # Final direction: F [5.46,0.27 Confidence: HIGH] >NC_007912 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 3845001 19 100.0 30 NNNNNNNNNN ................... TCTCGATTATTCTTTCTGTCTCGATTATTC 3845050 19 100.0 20 NNNNNNNNNN ................... CCCTATAAACAACAACAAAA 3845089 19 100.0 1 NNNNNNNNNN ................... NNNNNNNNNN ========== ====== ====== ====== ========== =================== 3 19 25 TTTCTTTAACTAGTGCCTG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.16%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [78.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [154,32] Score: 0.18/0.18 # # Final direction: F [0.45,0 Confidence: MEDIUM] >NC_007925 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 4995446 36 100.0 30 NNNNNNNNNN .................................... CGATTCGGTGACTGGATGACCATGACTGGG 4995512 36 100.0 30 NNNNNNNNNN .................................... TCAGAATGCCGGCGATGCCGCTGAGAGTGG 4995578 36 100.0 30 NNNNNNNNNN .................................... TCGACCTTCACCGGGGTGCATGCGTTTCGC 4995644 36 100.0 30 NNNNNNNNNN .................................... GTTTGGTCGCGAAGCACTGCAGCACCGCCC 4995710 36 100.0 30 NNNNNNNNNN .................................... CGCAAGATGTGGCGGTGCTCTCTGATCAAG 4995776 36 100.0 30 NNNNNNNNNN .................................... CACCCGGTCATTTCCGAAATCGCGATAACG 4995842 36 100.0 30 NNNNNNNNNN .................................... AATGACTTCGCGTTCGTGTTTACGTTTTGG 4995908 36 100.0 30 NNNNNNNNNN .................................... ACCGACGGCGTCGACGTGATCGCTCTGAGT 4995974 36 100.0 30 NNNNNNNNNN .................................... ATGGCAGTATCGTTGCCACGACGGCAACGG 4996040 36 100.0 30 NNNNNNNNNN .................................... GGCGCTGGGCTTCATACCGGCTGACTTGTA 4996106 36 100.0 30 NNNNNNNNNN .................................... AGCTCAAAGGGAACCACCATGGCTAAGCTT 4996172 36 100.0 30 NNNNNNNNNN .................................... AGCCCGAACAGACCGGGCTGCAGCGCGCGG 4996238 36 100.0 30 NNNNNNNNNN .................................... AACGAATAAGCCGCTACGCCAACGGCGATC 4996304 36 100.0 30 NNNNNNNNNN .................................... GGCGTGTTGCAGCGAGCAATAACAGCGGAA 4996370 36 100.0 30 NNNNNNNNNN .................................... CCGATGACCTGGCGCTGCTCGGCTACACCA 4996436 36 100.0 30 NNNNNNNNNN .................................... CAGCCAATCTGTTGACGGCTCGCAAACCGT 4996502 36 100.0 30 NNNNNNNNNN .................................... TTGCGGGGGCACCGATAGGCTATCGGTCGC 4996568 36 100.0 30 NNNNNNNNNN .................................... GGTGTTTACCCGCACGTTCGTAAGAGAGAC 4996634 36 100.0 30 NNNNNNNNNN .................................... TCGCGATGCTGCGAGCCGCCGTCACCGACC 4996700 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 20 36 30 GCCGTGGCTTCCCTACCGATTTCCCCGTGGTAGGCT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.90,-3.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [499,60] Score: 0.18/0.18 # # Final direction: R [0.18,1.01 Confidence: HIGH] >NC_007929 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 120840 36 100.0 30 NNNNNNNNNN .................................... TATTTGTGGAGGTTATGATATTTGGATCAT 120906 36 100.0 30 NNNNNNNNNN .................................... TATCTATCGTATTTATCCGCCTTAGGTTTA 120972 36 100.0 30 NNNNNNNNNN .................................... CTGCGATACTGTATATACCTTGAGCAACTT 121038 36 100.0 30 NNNNNNNNNN .................................... AGAAAGCCAAATGAATAGTGGTTGGAATAA 121104 36 100.0 30 NNNNNNNNNN .................................... TCTGATAGCCAGAGAAATGAATATTGTAAA 121170 36 100.0 30 NNNNNNNNNN .................................... ACGTTTGACTAACGTAAGCAAAGTTAAAGC 121236 36 100.0 30 NNNNNNNNNN .................................... AGTAATGAATAGTTAAGTATAAGCGTTTAT 121302 36 100.0 30 NNNNNNNNNN .................................... TAAGCCCGTTAATAGTGGTGATACACAGCA 121368 36 100.0 30 NNNNNNNNNN .................................... TTATCTCTATGAAGAAATTCAAGCTATTTA 121434 36 100.0 30 NNNNNNNNNN .................................... TGGGTCAATTAACTACAATGTTATGACTAA 121500 36 100.0 30 NNNNNNNNNN .................................... TTCACAAAAAGCTATCAAAGAGACTACTGA 121566 36 100.0 30 NNNNNNNNNN .................................... TAACCGCTAATGTTAGATATGACGAAAGAT 121632 36 100.0 30 NNNNNNNNNN .................................... TTAAAGCAGTTGGCAAGGTTGGAGATGCAA 121698 36 100.0 30 NNNNNNNNNN .................................... GAAGTTTTACATTATGAAGCCCAAGCAAGG 121764 36 100.0 30 NNNNNNNNNN .................................... AGCGTATGTTGACGCTTATGATGGTTGGTT 121830 36 100.0 30 NNNNNNNNNN .................................... AAAATTATATTATAAGGAGTGCGGTTTTGT 121896 36 100.0 30 NNNNNNNNNN .................................... AAGGCGGTGAGATTAGTTGCAATGGCTAAA 121962 36 100.0 30 NNNNNNNNNN .................................... ACGGTATTAGTGGATCTAGTTCCGCTGGTA 122028 36 100.0 30 NNNNNNNNNN .................................... AAAGGGCTTGAGAAACAAGTTTGGTCAGAT 122094 36 100.0 30 NNNNNNNNNN .................................... ACAGCAATTTATAAGTTATCTCGCGATTGG 122160 36 100.0 30 NNNNNNNNNN .................................... CAATTCACACCGCAGTTCAATCAGCTTACG 122226 36 100.0 30 NNNNNNNNNN .................................... TGCTTTACCTTTTAATGTGTCTTTAAGCGA 122292 36 100.0 30 NNNNNNNNNN .................................... AGAAATCACATACAAGCTGCTATATGTTGG 122358 36 100.0 30 NNNNNNNNNN .................................... TAACGTTGTAGCGTTTCTATACCGGCCAGA 122424 36 100.0 30 NNNNNNNNNN .................................... CAGATTCCATAATCTTTATCTACGTTCTCT 122490 36 100.0 30 NNNNNNNNNN .................................... AAATTGATATTTTAACACGCTACCACCATC 122556 36 100.0 30 NNNNNNNNNN ..................................AT GGTTCTGAGCCTAGTTAGAATGACATAGGT 122622 36 100.0 1 NNNNNNNNNN ..........A..A......T...T..A....T.T. NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 28 36 30 GTTTCAGAAGTATGTTAAATCAATAAGGTTAAGACC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:69.44%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [33,285] Score: 0.18/0.18 # # Final direction: F [0.41,0.18 Confidence: MEDIUM] >NC_007947 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 632592 32 100.0 33 NNNNNNNNNN ................................ ATGTTTGGCACAAGACCAGCGGTTGAACGCACC 632657 32 100.0 33 NNNNNNNNNN ................................ ATGAGGTCGCGGAAATCATCCAGGGCGCCGGTG 632722 32 100.0 36 NNNNNNNNNN ................................ GAGTCAAAGACAAGCACCGTCCGCTGCTCAATCAAA 632790 32 100.0 33 NNNNNNNNNN ................................ AACCAGAAGGGCTGTAAGGGATTCCAGACTGAA 632855 32 100.0 33 NNNNNNNNNN ................................ CGATTCAACGTGAATGGCGCAGTGGCCGGGCAG 632920 32 100.0 37 NNNNNNNNNN ................................ ACCATCATGGCAGACGGTGAGGATGACAAAGAAGGGC 632989 32 100.0 34 NNNNNNNNNN ................................ GCTTCAGCGCTAGGTGCCGTTAGGCGTTGGGGAG 633055 32 100.0 34 NNNNNNNNNN ................................ TTTGCGTAATAGGTTCTGCTGGAATAGTGACTCG 633121 32 100.0 34 NNNNNNNNNN ................................ CGCCTTCGGCCCACGTTTTATAGTCGTCGTACAG 633187 32 100.0 34 NNNNNNNNNN ................................ GTGCGACACCCATCCGCCAGACTGCTTGCCGTCA 633253 32 100.0 34 NNNNNNNNNN ................................ CATCCGGGTACGTCTTGCCGCCCATAATGCCAAC 633319 32 100.0 34 NNNNNNNNNN ................................ ATATCTGACACCCGTTGATTTCCGTCCGTCCGAC 633385 32 100.0 34 NNNNNNNNNN ................................ ATCTCGAAACTAGCCACCGCAACGGGTTCACCTT 633451 32 100.0 35 NNNNNNNNNN ................................ TTGTCTTTGTTGCTCCATACCACCAGGGAGTTATG 633518 32 100.0 36 NNNNNNNNNN ................................ TTCTCAACCCGGTTTCTCATTTCTCCAAGCTGACGC 633586 32 100.0 39 NNNNNNNNNN ................................ GCACTGTCATGCGCTCAACCAGGTAATATGGCTGAGGGC 633657 32 100.0 34 NNNNNNNNNN ................................ GCACAGGACAGAATGACCCCGGATCTGTTCGGTA 633723 32 100.0 35 NNNNNNNNNN ................................ CTGCGCGTTGTGCAACAGCCAGCTTCGACTCCAGA 633790 32 100.0 36 NNNNNNNNNN ................................ ACCATCATGGCAGACGGTGAGGATGACAAAGAAGGG 633858 32 100.0 35 NNNNNNNNNN ................................ ATAAGTGTTCAATCTGTGGTCACTGCGGTGAGTGG 633925 32 100.0 35 NNNNNNNNNN ................................ TAAGGTTGTGTGCTCTAACGGTTAGAGTGTGCCTG 633992 32 100.0 35 NNNNNNNNNN ................................ CTGTGCTGCCAGCTTGTAGTTTTCAAAGCTAAGTG 634059 32 100.0 35 NNNNNNNNNN ................................ CTGACGGCGCTCCCGCATGAAGTCCTCCAGGTCGC 634126 32 100.0 35 NNNNNNNNNN ................................ CTGCGGCAACTATTCAGCTTGCTGATGGCGAGCGC 634193 32 100.0 35 NNNNNNNNNN ................................ CAGACTGAATCCATCGGTTAAGTAGAGTAGATAGC 634260 32 100.0 34 NNNNNNNNNN ................................ TACGATCTTACGCACCCTTGCCCGACGGGTTTAT 634326 32 100.0 34 NNNNNNNNNN ................................ CGAATGCCATTGATATGGTCAACCTGATGGGGCC 634392 32 100.0 35 NNNNNNNNNN ................................ GTTTTAGCTGGTCGTTTGCAATTTCATAAACAGTC 634459 32 100.0 35 NNNNNNNNNN ................................ TCCAAGCTGACGCTTGTATGAGCGTTCCATGGCGG 634526 32 100.0 34 NNNNNNNNNN ................................ AACGACAAAGCAGAGAGTGTCGCTAAGTTTATCC 634592 32 100.0 36 NNNNNNNNNN ................................ AAATTGATTTAATTCAAACTCGAAAACATACCGGCC 634660 32 100.0 34 NNNNNNNNNN ................................ GTGAAGCCTGTTTGCTGGATCCAGAAAATTGCAT 634726 32 100.0 35 NNNNNNNNNN ................................ GTTAAGAGGTGTTTCGATGGTGGTGATTGACATGC 634793 32 100.0 34 NNNNNNNNNN ................................ CGCGCGTTGCTGGCATGGGTGCCCGATGAGGATC 634859 32 100.0 35 NNNNNNNNNN ................................ GAGTACATGATCTTGATGTTTTGCCGCTCGCACTC 634926 32 100.0 35 NNNNNNNNNN ................................ GCGCCGCCACGCTCGCCATTGCGCCCACACCTCGG 634993 32 100.0 35 NNNNNNNNNN ................................ CAGGCCTGGGGCGGGGCCTCAAAATTAGAGAGCGA 635060 32 100.0 35 NNNNNNNNNN ................................ TGCCCTTATGGTGTCGGTTCGCGGGAAGTGTATTC 635127 32 100.0 35 NNNNNNNNNN ................................ TGGGACAAGACCAACTGGCAGAGCCTGTGCGATGA 635194 32 100.0 35 NNNNNNNNNN ................................ AGGCGAATCAATTAATTCCCTCGGTTTAAAATATC 635261 32 100.0 35 NNNNNNNNNN ................................ AGTAGTGGATCGCGGCAGGGCCATTCCCCGGGCCT 635328 32 100.0 35 NNNNNNNNNN ................................ TGGGATAAGGACAACTGGCAGAGTCTGTGCGATGA 635395 32 100.0 36 NNNNNNNNNN ................................ CTGCTTGTCGTTGCTATCTATATCAATGGCTGGCTC 635463 32 100.0 34 NNNNNNNNNN ................................ AAACTAATCAATGAATGTCGCCCGCGCTGCCAGG 635529 32 100.0 35 NNNNNNNNNN ................................ AGTCAACCCGCAAGGTGATCTGTTTGGCAACTCCG 635596 32 100.0 34 NNNNNNNNNN ................................ CGACAATCAATAACATCACGGGATTAGTTAGAAG 635662 32 100.0 33 NNNNNNNNNN ................................ GTGACAATTGGGAGTTGTTCGATACTCTCGGAA 635727 32 100.0 34 NNNNNNNNNN ................................ TTCATACAAACAGCAAGGATTTTACTTTGTATTT 635793 32 100.0 36 NNNNNNNNNN ................................ CTTCACTGAGCATGGTATGATTATTGGCCTTGCTTC 635861 32 100.0 35 NNNNNNNNNN ................................ CTGAGTTGAACGCCAGTCCCAATGTCTCGCAAAAA 635928 32 100.0 36 NNNNNNNNNN ................................ CGGCCAATATCAAGTGCTGGAACCCCAACCAAGCGA 635996 32 100.0 35 NNNNNNNNNN ................................ TGGAAATCATGGGCCTGCCTCCGTTTACACATGAA 636063 32 100.0 38 NNNNNNNNNN ................................ GTCGGTACGGCTTACAAGCACCGGCACGTTGGCAACAG 636133 32 100.0 35 NNNNNNNNNN ................................ CGGTGTCGATGTCTGGGGCGATGCGAACTACAGCA 636200 32 100.0 34 NNNNNNNNNN ................................ TGCCCGCCGTGGCCCAAACCGATCAACCCAGAAG 636266 32 100.0 34 NNNNNNNNNN ................................ GTGTGACCGTCATCAGCATGTCCAGAATTGGTGT 636332 32 100.0 36 NNNNNNNNNN ................................ TCGACATCATGGGCCTCCCTCCGTTCACACATGAAC 636400 32 100.0 34 NNNNNNNNNN ................................ ACCATATCTGCGATGGCCTCAACATGCTTCGACC 636466 32 100.0 37 NNNNNNNNNN ................................ AATCAGAGGCGGGGTGACTTCGATGGTGGTGCCGGTG 636535 32 100.0 33 NNNNNNNNNN ................................ GTCGTCATCACGCAGTTTCCGCACCTGGTGCAT 636600 32 100.0 33 NNNNNNNNNN ................................ GTGTCGCCCCATACATCAATGCCTTGACGCCAA 636665 32 100.0 35 NNNNNNNNNN ................................ TTGTTGCTCCTGGTCGTGGTGCCGATGATGGGCTA 636732 32 100.0 34 NNNNNNNNNN ................................ ACACATGAACGGGACATCCCGTCGAGCGGCGATT 636798 32 100.0 35 NNNNNNNNNN ................................ GTGAGATACGGGACAACAAACGGGTTGCGCAGGAC 636865 32 100.0 35 NNNNNNNNNN ................................ ACGGAACACTACCCACCCAAGTAAACCAATGAGAG 636932 32 100.0 35 NNNNNNNNNN ................................ TGCCTCAACAGGCCCGGATGTTTTGAACTGCGAAT 636999 32 100.0 34 NNNNNNNNNN ................................ TCAATAATTTCACCTGTACTGGAATCAATCAAAT 637065 32 100.0 35 NNNNNNNNNN ................................ CTGTGATGAGGGAGAGCATGCCTTGCCAGATCAAT 637132 32 100.0 33 NNNNNNNNNN ................................ CTGCATGGCCGCTTGGACATGGCCGACTTGCCG 637197 32 100.0 35 NNNNNNNNNN ................................ ATGAATCATGCCATTGCCGAAGATGTCTTAATGAC 637264 32 100.0 34 NNNNNNNNNN ................................ TTGCAGTGAGCGTAATTCTTGACCGGCGGCTTCA 637330 32 100.0 33 NNNNNNNNNN ................................ ACCCATAAAACGGGGCCAGTTGTCCCATACTAA 637395 32 100.0 35 NNNNNNNNNN ................................ TGGATTTGAGAATCATTCATTTGAGCGACATAAGG 637462 32 100.0 34 NNNNNNNNNN ................................ GGTTTTCATCCCTTACAGCTACCGCGACCAGGCT 637528 32 100.0 35 NNNNNNNNNN ................................ CAGTACTACCACCAGAACAGAAACGCCGGCGACAG 637595 32 100.0 35 NNNNNNNNNN ................................ ACGCCGATGGAAACCAATGGCGTCGACCGTGACCT 637662 32 100.0 34 NNNNNNNNNN ................................ AGACTCAGGAACAGACAATTTGTCAAGAAGTAAT 637728 32 100.0 35 NNNNNNNNNN ................................ GCAGACTCTCGCCATTGGCTATCCGTACGCAGATG 637795 32 100.0 34 NNNNNNNNNN ................................ CGCACAATCAGATCAGGAGCTACATTCCCCACTG 637861 32 100.0 34 NNNNNNNNNN ................................ AAATCAGCAACTTGACGTTGATGAGCAGTATTGG 637927 32 100.0 34 NNNNNNNNNN ................................ CCTTGCTGCGGCAGCAGCCGAACAAACGCCGCCT 637993 32 100.0 34 NNNNNNNNNN ................................ GAGCCGACCAGCTTGAGGAAACCACCCGGAAACT 638059 32 100.0 34 NNNNNNNNNN ................................ TCATAGCTGAGGGCTATCAGATCGCCAGTATAGA 638125 32 100.0 34 NNNNNNNNNN ................................ TCTGGATGGCCTCGAATCCGTTGTAATCAGTCTC 638191 32 100.0 34 NNNNNNNNNN ................................ CAGGCTGGATCCCGGATATTACTCGCCAACAACA 638257 32 100.0 35 NNNNNNNNNN ................................ GTGAACAGGTCACGACTTTAAATCTTAATCGTTTT 638324 32 100.0 34 NNNNNNNNNN ................................ CGCCCGGGCGCACCTCCCAAGGTCGCGCGAGCAC 638390 32 100.0 34 NNNNNNNNNN ................................ CACCGCGATGATGAGCGTTTCCTGCGCTGGTTGC 638456 32 100.0 36 NNNNNNNNNN ................................ TTTTGTGTAGGCAAGATTCTAGTATCGTGCTTGCTG 638524 32 100.0 34 NNNNNNNNNN ................................ CGCACAGGGGAGATGATGAGCGGCGTTACGGGCT 638590 32 100.0 35 NNNNNNNNNN ................................ GCCATCCGCGGCACGGGCAATGTCGACAATATTGA 638657 32 100.0 34 NNNNNNNNNN ................................ CCAGTCAATGTTCGACCACGGGTCAAATACCCAG 638723 32 100.0 34 NNNNNNNNNN ................................ GGTTGCCTGGCTGAATGGATAGAAAGGGGACATT 638789 32 100.0 1 NNNNNNNNNN .............A.T.A.T.GCTGG...GCA NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 94 32 34 GTCGCACCCTGCGCGGGTGCGTGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [6,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.60,-5.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [177,240] Score: 0/0.18 # # Final direction: F [4.91,0.64 Confidence: HIGH] >NC_007947 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 175783 31 100.0 30 TGTTTTAAGT ............................... ATAGAGCTAATAAGAGTAACGGCAATGTAA 175844 31 100.0 30 GGCAATGTAA ............................... TCATTGGGACCAGAGCGGCTTTATGGCGTG 175905 31 96.8 TTATGGCGTG .............................C. CACGAAAG ========== ====== ====== ====== ========== =============================== 3 31 30 GTGTTCCCCGCACATGCGGGGATGAACCGGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [5,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [76.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [392,95] Score: 0.18/0.18 # # Final direction: F [0.86,0 Confidence: HIGH] >NC_007955 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 610799 29 100.0 32 ATATGGAACA ............................. ACTGGCTATCTACACCTGAAAAAGATAAAGGT 610860 29 100.0 32 AGATAAAGGT ............................. ACTCGTCATCGAACGGGTTTCGGAGTAAATAT 610921 29 100.0 32 GAGTAAATAT ............................. GTCGTGTGGACATTGTATGCAAGACTCCATTT 610982 29 100.0 32 GACTCCATTT ............................. TACTAAGTGCAATATTGCTGATGTTATTCTGT 611043 29 100.0 32 GTTATTCTGT ............................. TTTCCTCCGGCATTGATGTCACCGATAGTAGT 611104 29 100.0 32 CGATAGTAGT ............................. ACTGTACATCATTGTATTCGAATGAGCACCAC 611165 29 100.0 32 TGAGCACCAC ............................. ACATTGGATACTAAGAGGAAACTCGCAGAATA 611226 29 100.0 32 TCGCAGAATA ............................. GGACACTTACTCCGAAACCCGTTTGATGATGG 611287 29 100.0 32 TTGATGATGG ............................. AATACCCTCGCATGTCTGCAACATAAACGAAT 611348 29 100.0 32 ATAAACGAAT ............................. GGACAGTTGTATTGAGTTCTCTCCGTAGGGGT 611409 29 100.0 32 CCGTAGGGGT ............................. GTCTCCAGTGGTGCTATTGTATCACATAGGCA 611470 29 100.0 32 CACATAGGCA ............................. ACACTAAGTTTTTCAGGTCCTCTAGTGTATGA 611531 29 100.0 32 TAGTGTATGA ............................. GCGGGCGCACAGGGCGTAATCATCGGAAACAT 611592 29 100.0 32 TCGGAAACAT ............................. CTTCTTTCATCTTAACATATTTCGGCCAAACA 611653 29 100.0 32 CGGCCAAACA ............................. CAGGAATGGACCCTCAATATATCAAATGGTTA 611714 29 100.0 32 CAAATGGTTA ............................. CATTAGATAACCTCCTGGATCTCATGCTCTAA 611775 29 100.0 32 CATGCTCTAA ............................. TAGTGAGAGAGATCACTATAAACAAAGCAGCA 611836 29 100.0 32 CAAAGCAGCA ............................. GCCCCCAAAGTATAAACGTTCAGTTTCTAAGT 611897 29 100.0 32 GTTTCTAAGT ............................. ATAATGGGGTGATTGAAGTAAACGAGACCGAA 611958 29 100.0 32 CGAGACCGAA ............................. GTTATCATTAACATTCTGTTTCGATCCCGGAC 612019 29 100.0 32 GATCCCGGAC ............................. TGACCCAATCAGTGCAAAATGCCAACGGTCAG 612080 29 100.0 32 CAACGGTCAG ............................. CTTAATAAATCTAATTGCCTTACCGCATCCAT 612141 29 100.0 32 CCGCATCCAT ............................. ACCCCTTCATTAAAAATGGATCAACTTTTTAA 612202 29 100.0 32 AACTTTTTAA ............................. TCTATGAGAATTGGCAGCGATATTTTGATAGG 612263 29 100.0 32 TTTTGATAGG ............................. GTTATTCCGGTTGTTCGTTTTGTCCCTGCTTT 612324 29 100.0 32 TCCCTGCTTT ............................. TTGTATCAGGCATTGATAGCGTGGATAGTTCT 612385 29 100.0 32 GGATAGTTCT ............................. CCACTTATTGAAGCTGGAGCTTCAAAGGTCGT 612446 29 100.0 32 CAAAGGTCGT ............................. TAATCTCCGCGATTACGTTACCATCACGCAGC 612507 29 100.0 32 ATCACGCAGC ............................. AAACCATTCGGCAGGAGCTATTAAAGCACACG 612568 29 100.0 32 AAAGCACACG ............................. TGACGCATTAGAATAGCTCACAGTATACCGAT 612629 29 100.0 32 GTATACCGAT ............................. AATACAATCCATGCATCTTTATTTGAGGCATT 612690 29 100.0 32 TTGAGGCATT ............................. ATACGGTCCTTATCGGGGGTCCCCTTGCGTAT 612751 29 100.0 32 CCTTGCGTAT ............................. CCAATCGTCTATTGTTCCTTGTTGTGTTTGTC 612812 29 100.0 32 TGTGTTTGTC ............................. GTAGCAGTAATAAAAAAATCAGAACATCTGTC 612873 29 100.0 32 AACATCTGTC ............................. GCCTTTTCAGCTCTCTTTGATATAAGAGCTGT 612934 29 100.0 32 TAAGAGCTGT ............................. TAAGAACCGCCAACTGGGTACATATATCCATC 612995 29 100.0 32 TATATCCATC ............................. TACACATCATTCTCACTGTCGTACACCGTCAC 613056 29 100.0 32 ACACCGTCAC ............................. TTAAACAAGATTCTCCTGATAATATGTCCTTG 613117 29 100.0 32 TATGTCCTTG ............................. TCGATGTATATAATGCAGCGCGCCAACGAATG 613178 29 100.0 32 CCAACGAATG ............................. ACTATTCGTTTTCTGACTGGGCGTTTATAAAA 613239 29 100.0 32 GTTTATAAAA ............................. ACAATTATCAAATACAATACGGGAATACACTT 613300 29 100.0 32 GAATACACTT ............................. TATTGATTTCTTCTCCAGCATCGCTCATAACA 613361 29 100.0 32 GCTCATAACA ............................. TTAAAATTGTGTCAGTGTTGTTATTCAGTATT 613422 29 100.0 32 ATTCAGTATT ............................. CTTTATTACAACGTCACCTTGAGATGAATTAG 613483 29 100.0 32 GATGAATTAG ............................. GTGAAGAACCATGAACTATCACGACCATTTAT 613544 29 100.0 32 GACCATTTAT ............................. CTTAGTTTGTCACGGAATAGCTGAGGAATGAT 613605 29 100.0 32 GAGGAATGAT ............................. CCCCCGAAATATCTACCCAGCCAGTATTTATT 613666 29 100.0 32 AGTATTTATT ............................. ATAGAGAAGTGTTAAAACCTTCAGACAGTAAA 613727 29 100.0 32 AGACAGTAAA ............................. TTTGTGAAAGATATTCCGGTAACAAACAAGAC 613788 29 100.0 32 CAAACAAGAC ............................. GGAACCGTTTTCAACATCCGAATTCTTTCATT 613849 29 100.0 32 TTCTTTCATT ............................. CCAAACTCTATACATCTTGAACCTACGCAGGA 613910 29 100.0 32 CTACGCAGGA ............................. ACAGATGAACAGCATCGTATCTGGTGGCACAA 613971 29 100.0 32 GGTGGCACAA ............................. TAAAAATCACGAAAACTATCGCACTGTATCGG 614032 29 100.0 32 ACTGTATCGG ............................. GGAGAACGAGGTGACGGAAAGAATCGGCACTA 614093 29 100.0 32 ATCGGCACTA ............................. ATCCTGTTTTAGGTCCTTGAGAGGAAGGTTCT 614154 29 100.0 32 GGAAGGTTCT ............................. CTGTAAAAGCTGACCCTCGGCATGTCCGGGTA 614215 29 100.0 32 TGTCCGGGTA ............................. TCATCTTCTGCTTCGACGATAGTTTCAGCGGG 614276 29 100.0 32 TTTCAGCGGG ............................. ATATCAGCGATATCAAGTATGACGGTGGTGCT 614337 29 100.0 32 CGGTGGTGCT ............................. TCGATATAAACACATACGCCCGGACTCAATCG 614398 29 100.0 32 GACTCAATCG ............................. ACCCTGACCTTCTCTGAGATCAAATGGGCCAA 614459 29 100.0 32 AATGGGCCAA ............................. GTAATTGTTCATTGTTGGCTACAAATACTGTT 614520 29 100.0 32 AAATACTGTT ............................. GTATTGGTGATTATCTTGATTTGGGTAATCAT 614581 29 100.0 32 GGGTAATCAT ............................. AAAGCAAACACGAGGAGCTCACCAAATCAAAA 614642 29 100.0 32 CAAATCAAAA ............................. CCAACACACATCACACTTTAAGAACCAACACC 614703 29 100.0 AACCAACACC ............................. AACTTCATTG ========== ====== ====== ====== ========== ============================= 65 29 32 GAGTTCCCCATGCATGTGGGGATAAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [7,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-9.10,-7.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [107,408] Score: 0.18/0.18 # # Final direction: F [1.01,0.18 Confidence: HIGH] >NC_007955 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1212627 30 100.0 36 TTTTTGCTTG .............................. GTAGCAATTGTAACGAGGTGCGATATGGGAATACAA 1212693 30 100.0 35 GGGAATACAA .............................. TACGATGCCGAAATACATGTGAGGTTAGGGTCATG 1212758 30 100.0 37 TAGGGTCATG .............................. CGCGCTAACAATAGCAGAACTTGCAGCACACAGTCAC 1212825 30 100.0 36 ACACAGTCAC .............................. ATTGACGGGAATCAGGTAGCTGTCGCTACATCCAAA 1212891 30 100.0 36 TACATCCAAA .............................. ACGCTGACGTAATCCGTGTCAAGGGGTGGACAAAAT 1212957 30 100.0 36 TGGACAAAAT .............................. AACTGTCAAACCAAGGTAGCAAAGATAAGCATCTTG 1213023 30 100.0 35 AAGCATCTTG .............................. GTGGAAATATGGGTATAATGTATATTTGATGAGTG 1213088 30 100.0 36 TTGATGAGTG .............................. GCAGTTCTTCGATCTGTTCCCACCGAGCCTTCCTAG 1213154 30 100.0 37 GCCTTCCTAG .............................. GATTGTGCCCACAGTTCAATGGTATCACCATCTCCAA 1213221 30 100.0 36 CCATCTCCAA .............................. TGTGGTGATGTTCATTGTAGTGAATGTCCTTTTCGA 1213287 30 100.0 36 TCCTTTTCGA .............................. ATAGCATGAACACCTCTTTTAGAAATTGGGATGGTG 1213353 30 100.0 36 TGGGATGGTG .............................. TCACAACTTCGCTTCTGGGTGCGCTGGTGGCTAAAT 1213419 30 100.0 36 GTGGCTAAAT .............................. TCACACGTTCCCATAACAGAAATGCACAACACGCAA 1213485 30 100.0 36 CAACACGCAA .............................. GCTTCCACTGGACATGATTAATCATGATAGATTATA 1213551 30 100.0 36 ATAGATTATA .............................. AATGTATTGGCAGGTTCGGACATCTCAAGTGGGACT 1213617 30 100.0 35 AAGTGGGACT .............................. GACGATGCAATCTATCGGGTCAGAGCTACCTCCAA 1213682 30 100.0 36 CTACCTCCAA .............................. AGATTATAAAACTTTGGAATTGGATTTGAGATAATA 1213748 30 100.0 TGAGATAATA .............................. TATGTTGCTT ========== ====== ====== ====== ========== ============================== 18 30 35 GTTAAAATCAGACCTTAGAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.50,-0.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [78.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [194,334] Score: 0/0.18 # # Final direction: F [5.14,0 Confidence: HIGH] >NC_007958 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1176803 36 100.0 30 NNNNNNNNNN .................................... AGCCGCGCTGCGATCATGTCGGAAGACGAG 1176869 36 100.0 30 NNNNNNNNNN .................................... ATCCTCATGGCAACATTCGAGGGTGATCCG 1176935 36 100.0 30 NNNNNNNNNN .................................... TCCGAAGGTTCTAGATCGACGCAAAGAGAT 1177001 36 100.0 30 NNNNNNNNNN .................................... CAAGTATTCCGGCGTGTCGAACTCGGGCCG 1177067 36 100.0 30 NNNNNNNNNN .................................... GATCTGTTCGACGATTGCGCGGATGCTGCC 1177133 36 100.0 30 NNNNNNNNNN .................................... CGCCGCCAGCTCGGCGACATAGTCGAGCTT 1177199 36 100.0 30 NNNNNNNNNN .................................... TAAAGTCCGGCCGCGTCACCGCTGCAGCCG 1177265 36 100.0 30 NNNNNNNNNN .................................... CGCGTCGGCGACGGCGTCTGCTTTCGGTTT 1177331 36 100.0 30 NNNNNNNNNN .................................... AGGCAATGAAGGGCGTGCGCAACGCCTTCC 1177397 36 100.0 30 NNNNNNNNNN .................................... CACCCGCACGTGGATGAGACGTTGCGTCGA 1177463 36 100.0 30 NNNNNNNNNN .................................... ACGATAGGAACGTGCCCTGCGTCGTGGAGC 1177529 36 100.0 30 NNNNNNNNNN .................................... CGCGTATATCGCGCGGGGGCGTCTTGGATG 1177595 36 100.0 30 NNNNNNNNNN .................................... AGGCGGCGAATTGCTGGCGCGCCGCGGCGA 1177661 36 100.0 30 NNNNNNNNNN .................................... TTCAAAGGCATCTATCGTCCGCTGCAATTT 1177727 36 100.0 30 NNNNNNNNNN .................................... GCCCAATCCAACCTGGTCAACGGAAAGATT 1177793 36 100.0 30 NNNNNNNNNN .................................... CGCTCGATCAGGATTGCCTTGAAGCCTTCG 1177859 36 100.0 30 NNNNNNNNNN .................................... CGGTTCATGCTGATGCCCTCGCGGGTTCGC 1177925 36 100.0 30 NNNNNNNNNN .................................... GCGGAGCGATGTGGGTGCAGAAGTGCATCG 1177991 36 100.0 30 NNNNNNNNNN .................................... AAGATGGTCACGGCCATGTCTACGATGTTC 1178057 36 100.0 30 NNNNNNNNNN .................................... TGGATGGATGATGATGGCCGACTTTGGCAG 1178123 36 100.0 30 NNNNNNNNNN .................................... CTTGTCTGTCCGCTCGTCCGTCCAGAAACC 1178189 36 100.0 30 NNNNNNNNNN .................................... TTGAGCGAGCTGATGCTGGTCGAAGCCGGA 1178255 36 100.0 30 NNNNNNNNNN .................................... CCAGGTTGCAAGCTGGCGGTAGCGCGCGAA 1178321 36 100.0 30 NNNNNNNNNN .................................... GATGCTGCGGCCGTTGGCGAGATTGGTGAT 1178387 36 100.0 30 NNNNNNNNNN .................................... GCGGAATCGTTCAAGCCGCGCGCTGGGCTG 1178453 36 100.0 30 NNNNNNNNNN .................................... TCCGCCGAAAACGTTGTTCGCGACAATGCC 1178519 36 100.0 30 NNNNNNNNNN .................................... TGAGGTTGCAGCATGGGTGAGGTGATCATG 1178585 36 100.0 30 NNNNNNNNNN .................................... AACCAGGCGATGGACACGACCAAGGAGTTC 1178651 36 100.0 30 NNNNNNNNNN .................................... GCCGACGGCGTTCGCCCGCGACGCCGGCGG 1178717 36 100.0 30 NNNNNNNNNN .................................... GGTGACGATCCCGCGGTGGCGAAACTCTAT 1178783 36 100.0 30 NNNNNNNNNN .................................... GAAAGCGTCGACAACCTGTTGCGGCGCGCG 1178849 36 100.0 30 NNNNNNNNNN .................................... ACCGTTCCACGCCTTGACGCACCCGACGAA 1178915 36 100.0 30 NNNNNNNNNN .................................... CGCAGTGTCGGTCAGGCGGCGTATGGCTGA 1178981 36 100.0 30 NNNNNNNNNN .................................... GGGTCAGATCGAGGCGGTATAGCGGCAACG 1179047 36 100.0 30 NNNNNNNNNN .................................... CACAAGCCGAGCAGCCTGACGGCGCTCCAG 1179113 36 100.0 30 NNNNNNNNNN .................................... AGTGTCAGGTAGTTCCATCAGCGGCTTGGC 1179179 36 100.0 30 NNNNNNNNNN .................................... CTCCCGGTGCTTGCCGCGCAGCGCGGGAGC 1179245 36 100.0 30 NNNNNNNNNN .................................... GGGGTCCGCGGTGTGCAACGCGATGTACAG 1179311 36 100.0 30 NNNNNNNNNN .................................... CAAGGCCTCCAAGGCGACCCGCACCGAATA 1179377 36 100.0 30 NNNNNNNNNN .................................... AGAAGGGGACGAGGGGGCGGGGTAATGCCG 1179443 36 100.0 30 NNNNNNNNNN .................................... ATAGACCTTGAAGACGTGAGACGTCCCGGT 1179509 36 100.0 30 NNNNNNNNNN .................................... AGATTTCTTCATGCGGTCCCCGAAGAAAGA 1179575 36 100.0 30 NNNNNNNNNN .................................... GACAAGGATGCTCTCCATGTCGCGCTTCAG 1179641 36 100.0 30 NNNNNNNNNN .................................... CGCGAGGCGCGCCGCATTTGCGAAGAATGC 1179707 36 100.0 30 NNNNNNNNNN .................................... CAAGTATTCCGGCGTGTCGAACTCGGGCCG 1179773 36 100.0 30 NNNNNNNNNN .................................... CGCGCCGGAATCGGATCGATTGCGCACTCG 1179839 36 100.0 30 NNNNNNNNNN .................................... CAGTCCGAACGACTTTGCGACCCTCTCGAC 1179905 36 100.0 30 NNNNNNNNNN .................................... GGCAGGTCAACGATACTGGCTATCCATTCA 1179971 36 100.0 1 NNNNNNNNNN .....................C.....T...CG.C. NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 49 36 30 AGCCTACCACGGGGAAATCGGTAGGGAAGCCACGGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [10,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.50,-0.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [386,225] Score: 0/0.18 # # Final direction: F [1.15,0 Confidence: HIGH] >NC_007963 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 252373 29 100.0 32 TATGATTAGA ............................. ACGGCAGCATGCGAGCCGCGCTCACCGTGTTC 252434 29 100.0 32 CACCGTGTTC ............................. CCGGTATTCATGCCAGTGTGCGCAGACCCAAT 252495 29 100.0 32 CAGACCCAAT ............................. GATCATGTCGGCCATGCGATCGCTGACGTCAT 252556 29 100.0 32 CTGACGTCAT ............................. TCGACGTCGATCCAGCGTGCGAATGCCACGGC 252617 29 100.0 32 ATGCCACGGC ............................. CCAGCTTGAATGAGCCATCCCACAGGCCGCTG 252678 29 100.0 32 CAGGCCGCTG ............................. GGAGGACAAAAATCACCACAAAAGGCCCATTG 252739 29 100.0 32 AGGCCCATTG ............................. CCCAGGGGCGAATCATATGGCAGTATCGCAAC 252800 29 100.0 32 GTATCGCAAC ............................. GCATTCACGATGATTGCGCAACACGATTTGCA 252861 29 100.0 32 ACGATTTGCA ............................. TCCCCATGCTCGCATCACACCGTCTGCCCAGC 252922 29 96.6 32 TCTGCCCAGC ............................A CGTGCCACCAAGGTGCGTCGGGGCGACCTGTA 252983 29 100.0 GCGACCTGTA ............................. CCGACCGAGC ========== ====== ====== ====== ========== ============================= 11 29 32 CCGTTCCCCGCAGGCGCGGGGATCAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [4,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [58.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [366,763] Score: 0.18/0.18 # # Final direction: F [1.05,0.18 Confidence: HIGH] >NC_008010 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 402787 29 100.0 32 NNNNNNNNNN ..............A...........A.. CTCTGGCGGATGTACACCCGTTGTGGGCGCGG 402848 29 100.0 31 NNNNNNNNNN ..............A...........A.. CCAGCATTCACCGCTACGGCGGGGGCGGCGA 402908 29 100.0 32 NNNNNNNNNN ..............A...........A.. AATGCCCGGCGCAGGGCCATCACCTCGGCGAC 402969 29 100.0 32 NNNNNNNNNN ..............A...........A.. AAGCGGCAAAAGGGCCGCTGGCTGTGGCACCG 403030 29 100.0 32 NNNNNNNNNN ..............A...........A.. GAGGCGGGCACGGTCCAGAGCGGTTCAGTCAC 403091 29 100.0 32 NNNNNNNNNN ..............A...........A.. GCGCTCGCCGAACGCCCGTACCGCAGGAGCGC 403152 29 100.0 32 NNNNNNNNNN ..............A...........A.. GACCTCCGGGAAGCTGGTAACGCCTCCCTGCG 403213 29 100.0 32 NNNNNNNNNN ..............A...........A.. TTCGGGGTGCTGCCTGTGGCGTAGAGGTATGC 403274 29 100.0 32 NNNNNNNNNN ..............A...........A.. TCGGCGGCGGTGGCGATGTAGGTGCTGCTGGT 403335 29 100.0 32 NNNNNNNNNN ..............A...........A.. GGACGCGCCTACAGTGACAGCGGCAAGGTCTA 403396 29 100.0 32 NNNNNNNNNN ..............A...........A.. GTCTTCTCCGTTATGGGTCTGACCGCCGAAGT 403457 29 100.0 32 NNNNNNNNNN A............................ AGGTAGAGGGCTACCAATTTTGCGGTTGGCCG 403518 29 100.0 32 NNNNNNNNNN ............................. TTCGCGCTCATGGCGCTGATCGGTGGCGTGTT 403579 29 100.0 32 NNNNNNNNNN ............................. CAGCGCGCAACGCTCCCCTTCCTCGCCTCTGC 403640 29 100.0 32 NNNNNNNNNN ............................. TCAGCGCGGACAAGAACAACCCGGCCATGTCG 403701 29 100.0 32 NNNNNNNNNN ............................. AGGTGTCCAGAGGAAGCACGATGTTCGCCGCA 403762 29 100.0 32 NNNNNNNNNN ............................. GGCAAGGGGCGGCGCTCCGGGGATATCCAGCG 403823 29 100.0 32 NNNNNNNNNN ............................. GGATGAGCATTCAAATACTCAGCCACCGCATC 403884 29 100.0 32 NNNNNNNNNN ............................. GGCGTTTCCGCCTCCAGGAGACGGCGGGGGAA 403945 29 100.0 32 NNNNNNNNNN ............................. ACGACATAACCGTGGTTTTCGCGGCCCAGTCG 404006 29 100.0 32 NNNNNNNNNN ............................. ATGTGGGTGCCAACCGTTGCCGCCGTGGGTGA 404067 29 100.0 32 NNNNNNNNNN ............................. CGCGCCCCGCCGCGCCGCGCCGCCGCCCGGAA 404128 29 100.0 32 NNNNNNNNNN ............................. CCCCGGTACCAGGTGGAAGCCGTACGGGAAAC 404189 29 100.0 32 NNNNNNNNNN ............................. TCGTATGGCGGGTACCAGGTGAGCGGCACCGG 404250 29 100.0 32 NNNNNNNNNN ............................. GATTTGCGGCGTGATGAGGGGCGGCAGCGTGA 404311 29 100.0 32 NNNNNNNNNN ............................. CTAAGCCGCCATCTTCAGGCCGAGCCGCCCGC 404372 29 100.0 32 NNNNNNNNNN ............................. TCCGCGCTGCTGCTGCTGGTTTTTTGCACGGC 404433 29 100.0 32 NNNNNNNNNN ............................. CCTCATCCACGCTGTGCACGCGAATGTCCAGA 404494 29 100.0 32 NNNNNNNNNN ............................. GATTTGCGGCGTGATGAGGGGCGGCAGCGTGA 404555 29 100.0 32 NNNNNNNNNN ............................. CTAAGCCGCCATCTTCAGGCCGAGCCGCCCGC 404616 29 100.0 32 NNNNNNNNNN ............................. TCCGCGCTGCTGCTGCTGGTTTTTTGCACGGC 404677 29 100.0 32 NNNNNNNNNN ............................. CCTCATCCACGCTGTGCACGCGAATGTCCAGA 404738 29 100.0 32 NNNNNNNNNN ............................. CTCCGCAATCGCGTGACCACGCTGGAAAATAC 404799 29 100.0 32 NNNNNNNNNN ............................. CATCATTCCAGGGCGCACCTCCTCAATCGGCA 404860 29 100.0 32 NNNNNNNNNN ............................. GGGCTGCCCAGCCCGAACAGGCTCGACGCCTG 404921 29 100.0 32 NNNNNNNNNN ............................. TTTCCAGCCCCGGAGGACGGTTGATGAGCCAT 404982 29 100.0 32 NNNNNNNNNN ............................. GGGCTGCCCAGCCCGAACAGGCTCGACGCCTG 405043 29 100.0 32 NNNNNNNNNN ............................. ACGGAAACGGGTGTCGCCGCCGCCCAGCGCGA 405104 29 100.0 32 NNNNNNNNNN ............................. AGGTCCGCCGTGACGCGCAGAGTTCCGGTTTT 405165 29 100.0 32 NNNNNNNNNN ............................. GGCGTTCCGGTGGGGAGGTATATGGCAAAGCT 405226 29 100.0 32 NNNNNNNNNN ............................. CCCCGTCACCGGGCACACATGCTCGATCTGGC 405287 29 100.0 32 NNNNNNNNNN ............................. ATGCCGTAAATGGCGTAAACCTCCTCCTCGGC 405348 29 100.0 32 NNNNNNNNNN ............................. GTGCTGCAATTTTTGCATTCATTTTTTGCGGA 405409 29 100.0 32 NNNNNNNNNN ............................. CTGTTGGTCGCTCCCCCTTTTCCCGGCTATGA 405470 29 100.0 32 NNNNNNNNNN ............................. CTCATCCATGACCGGCTCAAACGGCTCAATCA 405531 29 100.0 32 NNNNNNNNNN ............................. TTTCCAGCTCAACCTCGTGCCGACTGACGACG 405592 29 100.0 32 NNNNNNNNNN ............................. CAGATGATCGCCGTCACAGAGACACAGGCGGC 405653 29 100.0 32 NNNNNNNNNN ............................. GCGGTCGGGTTCGGTGGCCTGAGGCAGCGCCC 405714 29 100.0 31 NNNNNNNNNN ............................. CACGCTCAACTGACTACGCCGACGCCCTGGC 405774 29 100.0 31 NNNNNNNNNN ............................. GACCCCCAATCGCCGCTGTTCGTCCTGCGGG 405834 29 100.0 32 NNNNNNNNNN ............................. TGAGGCAGCGCTGGTGTCCGTCGCCAATGAAA 405895 29 100.0 31 NNNNNNNNNN ............................. GGACGCTGACGTAAAGGCGCACGAGGGAAAC 405955 29 100.0 32 NNNNNNNNNN ............................. CTGAGGTGGACGCGGCTGACCGCATGCTCACG 406016 29 100.0 32 NNNNNNNNNN ............................. AGGGCATCCGAGAGGAACACGGCGAGCGGGGG 406077 29 100.0 32 NNNNNNNNNN ............................. ATCCTGCCCACCGTCTCTGCGGAGGTCGGGTG 406138 29 100.0 31 NNNNNNNNNN ............................. GCTCAGTGTCGGTGTCCACATCAACGGGGAG 406198 29 100.0 32 NNNNNNNNNN ............................. GACCTCAGCGACCCGGCGGCCTTTAAAAAGTA 406259 29 100.0 32 NNNNNNNNNN ............................. TTGGATTCACCGCCCAGCAGATCATTCCCATG 406320 29 100.0 33 NNNNNNNNNN ............................. GTGGTCGCGGCGGCCAGAGGCGCACCAAACCGG 406382 29 100.0 32 NNNNNNNNNN ............................. ACTCACGCAAAATCTCTTCAGAGGTCCAGGTT 406443 29 100.0 32 NNNNNNNNNN ............................. TGGTAGACGCCCTGCTCGACGAGGCGGCGACC 406504 29 100.0 32 NNNNNNNNNN ............................. CCCCGGCCCTGCGCCGGAGCTGCCGTGACGCC 406565 29 100.0 32 NNNNNNNNNN ............................. GGTGGTTCAGGGTGACGCCACGCCCGGCCCCA 406626 29 100.0 32 NNNNNNNNNN ............................. GGGTTGATCCCCGGCACGCTGAACTACACGGC 406687 29 100.0 32 NNNNNNNNNN ............................. GATGATGTGGTTGATGTGCCTCACCGTCCGGG 406748 29 100.0 32 NNNNNNNNNN ............................. AAGGAGATGGTGGACTGTACGCCGAAAGCATT 406809 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 67 29 31 CGGACCATCCCCACGCCCGTGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [117,70] Score: 0/0.18 # # Final direction: R [0.37,0.41 Confidence: LOW] >NC_007963 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 264668 29 100.0 32 NNNNNNNNNN ............................. TGTGGCGGCATCGGTTTCATGCGTACAAAAAA 264729 29 100.0 32 NNNNNNNNNN ............................T TCAGATCCGATTCATCGGTCTGGTCGATGTGG 264790 29 100.0 32 NNNNNNNNNN ............................. CCTGCTTAACGGGGTCGCCACCCGCGTGCTTT 264851 29 100.0 32 NNNNNNNNNN ............................. TCAGCCGCCTTGAACTTTCCTTCTGTGAGCCT 264912 29 100.0 32 NNNNNNNNNN ............................. GCGCCATTCCGCACCGCTTGGGATTCGCCGGC 264973 29 100.0 32 NNNNNNNNNN ............................. TGCGCCAGCTGCGCGGCGAACGTTCGCAAGAC 265034 29 100.0 32 NNNNNNNNNN ............................. ATGCCGATCACCCCGGCGAGCGCCATGCCCGC 265095 29 100.0 32 NNNNNNNNNN ............................. TGATCTCGGGGCCGCGCTTGCACAGGTAGTGC 265156 29 100.0 32 NNNNNNNNNN ............................. CTCGATAAGAATGGATGGCACATGGAGACGGC 265217 29 100.0 32 NNNNNNNNNN ............................. ATCGCGAGGTAGATGTCGCCCAGGCTGGAGAG 265278 29 100.0 32 NNNNNNNNNN ............................. CCTGGCGCAGCGGATAAGTGCAGGCCAGTTCA 265339 29 100.0 32 NNNNNNNNNN ............................. TCCGACATGTTCTTCAACTGGCTGGCGCACAC 265400 29 100.0 32 NNNNNNNNNN ............................. AGTTCTTCGTACACCTGTTCCTTGATGGCCTG 265461 29 100.0 32 NNNNNNNNNN ............................. ATTGGTCAGATCACACAGATTCTGACTAACAC 265522 29 100.0 32 NNNNNNNNNN ............................. CTCAGTTCCAAGGTGATTCGCGTTTCCAATGA 265583 29 100.0 32 NNNNNNNNNN ............................. CCAGCTCATCCGCGCCGTTATACCGGCGCGGG 265644 29 100.0 32 NNNNNNNNNN ............................. CGCGACGCCATGGCGATGGATAGCACGCCCTA 265705 29 100.0 32 NNNNNNNNNN ............................. CCGCAGTACGCGCGGCAGTCGGCGCTTACCTG 265766 29 100.0 32 NNNNNNNNNN ............................. CCAGCAGGTCATCGATGCCACGCTGCCGACGC 265827 29 100.0 32 NNNNNNNNNN ............................. AGCGACTGCATCCGGTAGCGCCCGAGCCAGGC 265888 29 100.0 33 NNNNNNNNNN ............................. GCGACCAAGGCAAGCCTGGCCGGCGAGCACCAG 265950 29 100.0 32 NNNNNNNNNN ............................. TTGGTGCCGGTGTGCAGCGAATGCCGTAGCGA 266011 29 100.0 32 NNNNNNNNNN ............................. CGTCGCCGAAATGGTCGCGGCACTGGACGTCG 266072 29 100.0 32 NNNNNNNNNN ............................. GCGAAGCCGTACTTCGTCATGCGCAAGGGCGA 266133 29 100.0 32 NNNNNNNNNN ............................. TTCCAGAACCTCGGCAGCGCCATCGTTGACGG 266194 29 100.0 32 NNNNNNNNNN ..............A.............. TTCGTGCTTAACAGCGGCGACCCGTTCATCGT 266255 29 100.0 32 NNNNNNNNNN ............T.T.............. ATCACTACCGTTTCCCGGAGAGCATCATGAAA 266316 29 100.0 32 NNNNNNNNNN ...........TT................ TTCACGTCGCAGTGGGGCGAGTACGACGACGG 266377 29 100.0 32 NNNNNNNNNN .....................G....... TCGGGCGAACGTCTGGCGCCGGGTTGGATACT 266438 29 100.0 32 NNNNNNNNNN ............................. TGCACGGCGGCGAGGCGCGGGCCTTTCGGAAT 266499 29 100.0 32 NNNNNNNNNN ............................. ATGAGGTGGTTGCCGGTGGCTGCTGCCTTCAT 266560 29 100.0 1 NNNNNNNNNN ......................CG...TA NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 32 29 32 CCGTTCCCCGCAGGCGCGGGGATCAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [4,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [63.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [112,38] Score: 0.18/0.18 # # Final direction: F [1.23,0 Confidence: HIGH] >NC_008021 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================= ====== 1234060 33 100.0 32 NNNNNNNNNN .C............................... AACTAATTCCGCAAAGGCATTGTTCATATAAT 1234125 33 100.0 34 NNNNNNNNNN G................................ TTGCAAAATTTACGTGATAACTTTAATAAAATAA 1234192 33 100.0 34 NNNNNNNNNN ................................. CAAACGTAGCAAATTCTACTTTTACAAAAGTTGG 1234259 33 100.0 34 NNNNNNNNNN A................................ GCTTTATCGATTTTTTAGAATATCTAGCCGAATC 1234326 33 100.0 35 NNNNNNNNNN ................................. ATTGGCCAGAATCATGTTCAATATGTCCTAGTTCA 1234394 33 100.0 35 NNNNNNNNNN ................................. GTAACCCTAACTGATCAAGATGCAGGAGATGAAAT 1234462 33 100.0 33 NNNNNNNNNN ................................. GAACTCTATGTTTCCTTTTATCTGCAAAATCGA 1234528 33 100.0 1 NNNNNNNNNN ................................. NNNNNNNNNN ========== ====== ====== ====== ========== ================================= 8 33 33 TATTTCAATCCACTCACCCATGAAGGGTGAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.55%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [160,150] Score: 0/0.18 # # Final direction: R [0,5.28 Confidence: HIGH] >NC_008021 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1234062 32 96.9 33 CGGGTTCATC -............................... AACTAATTCCGCAAAGGCATTGTTCATATAATG 1234127 32 100.0 35 TCATATAATG ................................ TTGCAAAATTTACGTGATAACTTTAATAAAATAAT 1234194 32 100.0 35 ATAAAATAAT ................................ CAAACGTAGCAAATTCTACTTTTACAAAAGTTGGA 1234261 32 100.0 35 AAAAGTTGGA ................................ GCTTTATCGATTTTTTAGAATATCTAGCCGAATCT 1234328 32 100.0 36 AGCCGAATCT ................................ ATTGGCCAGAATCATGTTCAATATGTCCTAGTTCAT 1234396 32 100.0 36 CCTAGTTCAT ................................ GTAACCCTAACTGATCAAGATGCAGGAGATGAAATT 1234464 32 100.0 34 AGATGAAATT ................................ GAACTCTATGTTTCCTTTTATCTGCAAAATCGAT 1234530 32 100.0 CAAAATCGAT ................................ TGCGCCAAAT ========== ====== ====== ====== ========== ================================ 8 32 34 ATTTCAATCCACTCACCCATGAAGGGTGAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.12%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [162,149] Score: 0/0.18 # # Final direction: R [0,5.28 Confidence: HIGH] >NC_008022 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1298993 32 96.9 35 CGGGTTCATC -............................... GTGAGGTAAGAGAACTTAAAGATATTATGAGAGGT 1299060 32 100.0 35 TATGAGAGGT ................................ CATAGACTTTGTATTCATATAGTTTTTTCTCTATT 1299127 32 100.0 33 TTTCTCTATT ................................ GCTAACATGATGTGGGAACAGGGTATCATGCAG 1299192 32 100.0 TATCATGCAG ................................ TGCGCCAAAT ========== ====== ====== ====== ========== ================================ 4 32 34 ATTTCAATCCACTCACCCATGAAGGGTGAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.12%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [162,149] Score: 0/0.18 # # Final direction: R [0,5.28 Confidence: HIGH] >NC_008023 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1257973 32 96.9 33 CGGGTTCATC -............................... AACTAATTCCGCAAAGGCATTGTTCATATAATG 1258038 32 100.0 35 TCATATAATG ................................ TTGCAAAATTTACGTGATAACTTTAATAAAATAAT 1258105 32 100.0 35 ATAAAATAAT ................................ CAAACGTAGCAAATTCTACTTTTACAAAAGTTGGA 1258172 32 100.0 35 AAAAGTTGGA ................................ GCTTTATCGATTTTTTAGAATATCTAGCCGAATCT 1258239 32 100.0 36 AGCCGAATCT ................................ GTAACCCTAACTGATCAAGATGCAGGAGATGAAATT 1258307 32 100.0 34 AGATGAAATT ................................ GAACTCTATGTTTCCTTTTATCTGCAAAATCGAT 1258373 32 100.0 CAAAATCGAT ................................ TGCGCCAAAT ========== ====== ====== ====== ========== ================================ 7 32 34 ATTTCAATCCACTCACCCATGAAGGGTGAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.12%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [162,149] Score: 0/0.18 # # Final direction: R [0,5.28 Confidence: HIGH] >NC_008022 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================= ====== 1298991 33 100.0 34 NNNNNNNNNN .C............................... GTGAGGTAAGAGAACTTAAAGATATTATGAGAGG 1299058 33 100.0 34 NNNNNNNNNN ................................. CATAGACTTTGTATTCATATAGTTTTTTCTCTAT 1299125 33 100.0 32 NNNNNNNNNN ................................. GCTAACATGATGTGGGAACAGGGTATCATGCA 1299190 33 100.0 1 NNNNNNNNNN G................................ NNNNNNNNNN ========== ====== ====== ====== ========== ================================= 4 33 33 TATTTCAATCCACTCACCCATGAAGGGTGAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.55%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [160,150] Score: 0/0.18 # # Final direction: R [0,4.87 Confidence: HIGH] >NC_008024 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1317064 32 96.9 33 CGGGTTCATC -............................... CACTCTTACTTTGAGAGTAAAGAAGCTCATGAA 1317129 32 96.9 34 AGCTCATGAA ....................A........... TATGTGGGTGTATTGGCTAGTCATGTAATTATTT 1317195 32 100.0 35 GTAATTATTT ................................ GCTTAAAATCGGTATTGTAACTGGTATCATCTTAG 1317262 32 100.0 33 ATCATCTTAG ................................ TGACTCTATTATTGATTGAGGAGGTGACGAAAT 1317327 32 100.0 34 GTGACGAAAT ................................ GGTAAGATTAATACCGGCTATCTCAACGCTAGTA 1317393 32 100.0 AACGCTAGTA ................................ TGCGCCAAAT ========== ====== ====== ====== ========== ================================ 6 32 33 ATTTCAATCCACTCACCCATGAAGGGTGAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.12%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [162,149] Score: 0/0.18 # # Final direction: R [0,5.28 Confidence: HIGH] >NC_008025 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================================== ====== 1488141 38 100.0 35 AACGGTGAAC ...................................... CCGGGTTACTCGTCGTCCTTGTTGGCGTCGTCCCA 1488214 38 100.0 32 CGTCGTCCCA ...................................... TCCAGCGGGGGAAGTACGCGAAGGCCAGCCGG 1488284 38 97.4 35 GGCCAGCCGG A..................................... GGCAGCGCCATCACGGGCCTGACCTCTGCCCTGAG 1488357 38 100.0 CTGCCCTGAG ...................................... AAGACGATCT ========== ====== ====== ====== ========== ====================================== 4 38 34 CGTTGCAGCCGTCTTTCGGGGCGGCTGAGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [6,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-15.00,-8.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [35.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [274,1520] Score: 0.18/0.18 # # Final direction: F [5.55,0.55 Confidence: HIGH] >NC_008025 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1423944 37 100.0 35 CGAAGAGGTG ..................................... CTCTGGCGCAAGCACGGCCTATTCGCGCACCGCTG 1424016 37 100.0 35 CGCACCGCTG ..................................... GTGGCAGGCCCGGAGGCTAGCCAGCAGGTGAACGG 1424088 37 100.0 34 AGGTGAACGG ..................................... AAAAGTCTGTCGCACAATCGCGACTTGTGCAAGG 1424159 37 100.0 35 TTGTGCAAGG ..................................... GTAACAGTGTCAAGCGCTGGTACTTGGTGCAATAG 1424231 37 100.0 35 GGTGCAATAG ..................................... TGCGGCCCACAATAGCGCGCGGCCTCTAGGCGGCC 1424303 37 100.0 35 CTAGGCGGCC ..................................... CCGCCATTGAACAAGGTGCGGCAGTGATTGTTTGG 1424375 37 100.0 33 GATTGTTTGG ..................................... GCCTCAAGGTAATTGAGGCGTTGGAGGGCCAAG 1424445 37 100.0 33 GAGGGCCAAG ..................................... GAGGCCCACCGTATCGCCGCGGAAACGCACGCG 1424515 37 100.0 AACGCACGCG ..................................... GGTTCACCGT ========== ====== ====== ====== ========== ===================================== 9 37 34 GTTTCAATCCTCAGCCGCCCCGAAAGACGGCTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [9,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.90,-12.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [41.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [69,193] Score: 0.18/0.18 # # Final direction: R [0.64,5.05 Confidence: HIGH] >NC_008025 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1488142 37 100.0 36 NNNNNNNNNN ..................................... CCGGGTTACTCGTCGTCCTTGTTGGCGTCGTCCCAC 1488215 37 100.0 33 NNNNNNNNNN ..................................... TCCAGCGGGGGAAGTACGCGAAGGCCAGCCGGA 1488285 37 100.0 36 NNNNNNNNNN ..................................... GGCAGCGCCATCACGGGCCTGACCTCTGCCCTGAGC 1488358 37 100.0 32 NNNNNNNNNN ..................................... AAGACGATCTGCGGCGGCGCGGGCGGCTCCAG 1488427 37 100.0 36 NNNNNNNNNN ..................................... GAGCGCGGGCGCGGGCTGCATGAAATCGGGACGCTG 1488500 37 100.0 35 NNNNNNNNNN ..................................... ACGCGCCTTCAGGGCCTCCGTGCAAAGCGTGATGC 1488572 37 100.0 35 NNNNNNNNNN ..................................... TACGCGGCTACCCGCTCCGAAGCTCGCCAGGCCGC 1488644 37 100.0 35 NNNNNNNNNN ..................................... CGCTGGGAGGGCGAGCGGAATCAAGGCGGCTACGG 1488716 37 100.0 33 NNNNNNNNNN ..................................... GGAAATGTCGGGAACAATCAACCCGCCCCCGGC 1488786 37 100.0 35 NNNNNNNNNN ..................................... CTCGCTTTAGCGTGGATTCGCTGAACCCTAGCGCC 1488858 37 100.0 36 NNNNNNNNNN ..................................... CTGGCCCGATCTGGTCTCGTCCTGCTCGATGCCCCA 1488931 37 100.0 33 NNNNNNNNNN ..................................... GTTGGGGGAGGTGGAGTCCGCCAGCGACCGCGG 1489001 37 100.0 34 NNNNNNNNNN ..................................... CTCACCCTCGCTGCCTGGCCTCTTGGCCCTTCCG 1489072 37 100.0 38 NNNNNNNNNN ..................................... GCAGAATACGCACACAAGAGCAAGAGGAAAGCCGCGCC 1489147 37 100.0 33 NNNNNNNNNN ..................................... CGCCTGGAGATACGCTTCCACCAGGATTTCCAG 1489217 37 100.0 35 NNNNNNNNNN ..................................... CCGGATACGCAAACGGGGCAACTGGTAGGCGTGAT 1489289 37 100.0 34 NNNNNNNNNN ..................................... CTGCTGGTCTGGGCGCTCCTCGACGGCATCTGGG 1489360 37 100.0 32 NNNNNNNNNN ..................................... ACTTAGTCGCCGATGACAACCTGAACAAAATC 1489429 37 100.0 32 NNNNNNNNNN ..................................... TCTAAGTGACACATTTTTAAGAGCGGCCCCGC 1489498 37 100.0 35 NNNNNNNNNN ..................................... CTCCGGCTCCTGCTTCGCCGGTGCCGGGTGCCGCC 1489570 37 100.0 34 NNNNNNNNNN ..................................... CTGCTGGTCTGGGCGCTCCTCGACGGCATCTGGG 1489641 37 100.0 35 NNNNNNNNNN ..................................... AAAACACTGGGGTCTTGCGGGGCTTTCCGTCAGGA 1489713 37 100.0 37 NNNNNNNNNN ..................................... GTAGCGGCTTCCATCAGAACTTCACCAGCCGTCCGAG 1489787 37 100.0 34 NNNNNNNNNN ..................................... GCCTGGTTGTGCCACGAACGCGCCGTAATCCACA 1489858 37 100.0 1 NNNNNNNNNN ...................A........CT..ATCT. NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 25 37 34 GTTGCAGCCGTCTTTCGGGGCGGCTGAGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [6,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-12.00,-5.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [35.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [275,20] Score: 0.18/0.18 # # Final direction: F [5.73,0.37 Confidence: HIGH] >NC_008025 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 217948 37 100.0 35 TTCAATCCTC ..................................... CCGATCCTAGATTCGTCCGGGAGGCCGTTCAGGCC 218020 37 100.0 35 CGTTCAGGCC ..................................... CGGGCGGGCCAGCCCCCCAGCGCGGGCACGCGGGT 218092 37 100.0 35 GCACGCGGGT ..................................... ACCTGAAGCGCGTTCCCGGCGGCGTCCTCAATCAG 218164 37 100.0 34 CCTCAATCAG ..................................... CGCGCCTACCCCGGCGAACCGCACCGCACGCTTG 218235 37 100.0 35 CGCACGCTTG ..................................... TCAGGACCATTCCCCGCTGCTCACACGCCATGCAG 218307 37 100.0 33 CGCCATGCAG ..................................... GCGGGGGCGCTGTTTCTCGGCTCGCTCCTTCCA 218377 37 100.0 35 GCTCCTTCCA ..................................... CCGTCCGGCAGGACTACCTGGACGCCGTGACGTCT 218449 37 100.0 32 CGTGACGTCT ..................................... GCCGCTCCCTCGGCAGGCCGTCCCCCAGCGGA 218518 37 100.0 33 CCCCAGCGGA ..................................... ATCCCGAAATCGCCTTCGACATCCGCTGCGAGG 218588 37 100.0 35 CGCTGCGAGG ..................................... TTTCCCGAGCAATGGGGACAGCCGGGCTACAAGCC 218660 37 100.0 35 GCTACAAGCC ..................................... CTTACGGCAGTGAACGCGGCGTTGTCGGGCAGATT 218732 37 100.0 CGGGCAGATT ..................................... GGTTCACCGT ========== ====== ====== ====== ========== ===================================== 12 37 34 GTTTCAATCCTCAGCCGCCCCGAAAGACGGCTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [9,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.90,-12.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [48.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [100,185] Score: 0/0.18 # # Final direction: R [0.64,4.87 Confidence: HIGH] >NC_008025 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 884042 37 100.0 34 TTCCCTACGC ..................................... GAAGGAAGAAGGCGCGGAGGAGTAACACCCGTTA 884113 37 100.0 35 ACACCCGTTA ..................................... GCATTAACGAAGAAGGGAGTATCGCTCGACTCCAT 884185 37 100.0 36 TCGACTCCAT ..................................... CCACGCGGCCCAGATCGAGCGGGCCTGCGGCGCGGC 884258 37 100.0 34 GCGGCGCGGC ..................................... CGAAGGAATCATGGAGGAGTACACGGCGTACTTG 884329 37 100.0 34 GGCGTACTTG ..................................... TCAGGCGATCTCAACGATCTCCATCTCGCGTGCG 884400 37 100.0 CTCGCGTGCG ..................................... GGTTCACCGT ========== ====== ====== ====== ========== ===================================== 6 37 34 GTTTCAATCCTCAGCCGCCCCGAAAGACGGCTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [9,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.90,-12.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [33.3-33.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [130,135] Score: 0/0.18 # # Final direction: R [0.37,4.87 Confidence: HIGH] >NC_008054 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 764071 28 100.0 33 ATCCATTACT ............................ AAAATCGTGTGCCCGTCAAGCCAGCCGGTGATT 764132 28 100.0 33 GCCGGTGATT ............................ TCACACAAAAAGCCCGCTAGATTGAATGTCTAG 764193 28 100.0 33 GAATGTCTAG ............................ TGTATTCAGTTTCGTTTGTTTGATCCTTGCCAT 764254 28 100.0 33 TCCTTGCCAT ............................ TCAATTTGCTGTGAGTGTAATAATTGATGGTGA 764315 28 100.0 33 TTGATGGTGA ............................ TTAAACCCAAACTATAAGCGTATGGTTCGCTCA 764376 28 100.0 33 GGTTCGCTCA ............................ TGAGACTCATTGCGCCGCTACTTCAGCGGGCTA 764437 28 100.0 33 CAGCGGGCTA ............................ TCTTCGATACTAATCGAAATCGATTCAAACCCT 764498 28 100.0 33 TTCAAACCCT ............................ TATGGACTAGAGGGATGCACCAGCAAGACAAGA 764559 28 100.0 55 CAAGACAAGA ............................ CCCACGCAAGTGGGGGTGATCCCATAAGCCCGGCCGGCTGCCTTTTTTGACGTGA 764642 28 100.0 33 TTTGACGTGA ............................ TAATTCGTTTTTGGGCGTGTCAGAACCTTATAA 764703 28 100.0 33 AACCTTATAA ............................ TAGGGCTTTGAGTTACTACGGCTATGAAATGGA 764764 28 100.0 33 ATGAAATGGA ............................ GAAATGTACAAAACAGGCTTGTCTCAAGCCAAG 764825 28 100.0 33 TCAAGCCAAG ............................ TAACTTAATTTGGATTGCTACCAAAAAGCCGGG 764886 28 100.0 33 AAAAGCCGGG ............................ TATCAGCCTTTTCGAGGTAATCACGGTAGATTG 764947 28 100.0 33 CGGTAGATTG ............................ CCACGGGGACGACTTCGGCCAATGGACCTCCGA 765008 28 100.0 33 GGACCTCCGA ............................ CTTTACAAGTTGGCCCAAAAGTTCAGCGGGTAC 765069 28 100.0 33 CAGCGGGTAC ............................ CGATACTGCTGCTAATCTGTTAGCGGAGGAAAA 765130 28 100.0 33 CGGAGGAAAA ............................ TCATTTTGTTAAATTTGTTTACTGAATAATTTT 765191 28 100.0 33 GAATAATTTT ............................ TAATCAAACTTGACTAATTCATTTTCAAAAGTG 765252 28 100.0 33 TTCAAAAGTG ............................ TCAGATTGTCCATATCTGCTCTCTGGCGCCTGC 765313 28 100.0 33 TGGCGCCTGC ............................ TATGTTTGAACTACTTGACGGGGCGGCCTTTGC 765374 28 100.0 33 CGGCCTTTGC ............................ CTGAAGTATGTTGCCGTTGCATGCACTTCAGCA 765435 28 100.0 33 CACTTCAGCA ............................ TTAAATCGAGGTGGTCAAACGTTGTACTTTAGT 765496 28 100.0 33 GTACTTTAGT ............................ TATGCACATTTGCAATCTTTATCTTAAAAGGAG 765557 28 100.0 33 TTAAAAGGAG ............................ CACAGCGAGCGTTATTGCCCAAAACATAGTGTT 765618 28 100.0 33 ACATAGTGTT ............................ TACTACAGCTTAAAACAAATTTTAAAGCGAAAA 765679 28 100.0 33 AAAGCGAAAA ............................ CATCCCGCAACTCCTTGACGGGGCGGCCTTGGC 765740 28 100.0 33 CGGCCTTGGC ............................ TCCGTCTTTATACTCTTTATAGGCCTTTTTCGG 765801 28 100.0 33 CCTTTTTCGG ............................ CTTAACCATGCAAGAAGATGAAACCGGGCTCAA 765862 28 100.0 33 CCGGGCTCAA ............................ CTTTATAACTCTTGGTTTCGTGCCCACTACAAG 765923 28 100.0 33 CCACTACAAG ............................ GAAAAAAGCCCGCTCAGGTCAAAAGCGAGCACA 765984 28 78.6 40 AGCGAGCACA ......................------ GTGATCCTGTTAGTGCAGGCATTTATAGAGAAGAAAAGAA 766052 28 96.4 33 AAGAAAAGAA .....................A...... TTATAAGGAATTCAACGGGAACAAATTAACTAG 766113 28 100.0 33 AATTAACTAG ............................ TTATTGTAATTGCTGCCGGGGCTTATGCCCTCG 766174 28 100.0 33 TATGCCCTCG ............................ TGTTAGAATGGGCCAGTACGCTATCTTTTTGTG 766235 28 100.0 33 TCTTTTTGTG ............................ TCATAGTTAAGGGGGATGCAGAAAATGACCAAT 766296 28 100.0 34 AATGACCAAT ............................ TATCCTTAGTCATTTTTTCCTCCTTATTTTTTTC 766358 28 100.0 33 TATTTTTTTC ............................ CTTACGGTAGATCAGACGATACTGACAGCCAGG 766419 28 96.4 33 GACAGCCAGG ..................A......... TGTTCTTGCCCAGAATGATAAACTCCTGCCCGA 766480 28 100.0 33 TCCTGCCCGA ............................ TTTGCTGTCAGTGTAGTGATCGACGGGGAACCA 766541 28 100.0 CGGGGAACCA ............................ TGGGGGGCGT ========== ====== ====== ====== ========== ============================ 41 28 33 GTATTCCCCACGCAAGTGGGGGTGATCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-11.90,-10.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [31,254] Score: 0.18/0.18 # # Final direction: F [0.78,0.55 Confidence: LOW] >NC_008149 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1221364 28 100.0 33 NNNNNNNNNN ............................ CTGATACAATCATCCTATTTGTCCTATCCAGAA 1221425 28 100.0 32 NNNNNNNNNN ............................ GACAAGAACCGAATCTTTCGCCGTGCCGTAAA 1221485 28 100.0 33 NNNNNNNNNN ............................ CCGAAATCATCAGATGTAATTAAGATTTTTGCT 1221546 28 100.0 32 NNNNNNNNNN ............................ AGACTGATGCAAGATGGCGGTATGCGTACAGA 1221606 28 100.0 1 NNNNNNNNNN ........................T.G. NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 5 28 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [68.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [356,5] Score: 0.18/0.18 # # Final direction: F [2.1,0 Confidence: HIGH] >NC_008086 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 946421 20 100.0 40 NNNNNNNNNN ...........C........ TTTTAGTAACAGCGCTAACTTAAGCTTCACTAACAGCGCT 946481 20 100.0 37 NNNNNNNNNN .....C.....C.....C.. CTTTAATAGCGCTCAATCTGTTTTTGAAAACAGCAGT 946538 20 100.0 37 NNNNNNNNNN .................... CTTTAATAGCGCTCAATCTGTTTTTGAAAACAGTGCT 946595 20 100.0 34 NNNNNNNNNN .................... TTTTAATGGCAACGCCAGCTTTGATAACGACATC 946649 20 100.0 1 NNNNNNNNNN .................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================== 5 20 37 TTCAATCAAGGGACTTATAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [862,6278] Score: 0.18/0.18 # # Final direction: R [0,0.59 Confidence: HIGH] >NC_008095 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 8858996 36 100.0 33 CGCAGCTCAG .................................... CGAACCTCGGGCGGTACGAGGGATATGCGCTGG 8859065 36 100.0 38 TATGCGCTGG .................................... GGGCTCGGGCCGATGCAGGCACTGCGCGGCATCCATGT 8859139 36 100.0 36 GCATCCATGT .................................... CAGCTTGATCAGCCGGCGGATGGCCGTCTTCTTCCA 8859211 36 100.0 35 TCTTCTTCCA .................................... CGTCCAGAGGCGTGAGCCCATTTCGTCCCCGTCGA 8859282 36 100.0 40 TCCCCGTCGA .................................... CCCACGCGGGGCACCTGGTGCGAGAGGACGCCCCACCTTT 8859358 36 100.0 37 CCCCACCTTT .................................... CGAAGGGTACCACGCGCGCGGCCCTATCGCGCAGGGA 8859431 36 100.0 36 CGCGCAGGGA .................................... GGTGCACGGATACAAAGAGACGCCGCAGGTCGCGTT 8859503 36 100.0 AGGTCGCGTT .................................... TTGCCGTCCTC ========== ====== ====== ====== ========== ==================================== 8 36 36 GTGCTCAACGCCTTTCGGCATCACGGCGAGCGGGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [6,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.30,-7.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [33.3-31.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [77,82] Score: 0/0.18 # # Final direction: R [0,0.37 Confidence: MEDIUM] >NC_008095 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 8860816 36 94.4 37 AACCAGCGAC --.................................. GAAACATGGAGAGCAAGAACATGGGCGGACGCGGCAG 8860889 36 100.0 35 GACGCGGCAG .................................... ATGAGAGCTGCAATGCCGCACTCCACGTACCAAGG 8860960 36 100.0 35 CGTACCAAGG .................................... GCCGCCGCAGGTCGTTGTCGGCGCGGCAGGTAAAG 8861031 36 100.0 34 GCAGGTAAAG .................................... AGGCGCTCGGCAAGTTTCCGGACGCGATGCTGAC 8861101 36 100.0 33 CGATGCTGAC .................................... ATGCCAGCGCGGATGTGTAGCTCAGGCCCGGGA 8861170 36 100.0 38 AGGCCCGGGA .................................... GTCACAGGACCGCCCGGATTCGAACCCATCGCATCGAG 8861244 36 100.0 37 TCGCATCGAG .................................... AGATGTGGGAGCTGATAACGGTCGGCATGGGTGGGTA 8861317 36 97.2 36 TGGGTGGGTA ........................T........... AACGCGCGTCTTCTCCAGATACAGGTCCCAGCCCTG 8861389 36 100.0 37 CCCAGCCCTG .................................... AGCACACCTACGACGCGATCCAACGCAACATCCGAGG 8861462 36 100.0 37 ACATCCGAGG .................................... ATTCGTTGCCACGCACCAACTTCGACCAGAGGTCGTT 8861535 36 100.0 35 AGAGGTCGTT .................................... GACGCGGTGAATCGCGTTCAGGACCCCCCCTGGCG 8861606 36 100.0 33 CCCCCTGGCG .................................... GAAGGAACGCGCGATGGCGGTCGGCTCCGCGCC 8861675 36 100.0 37 GCTCCGCGCC .................................... AACACACCTACGACGCGATCCAACGCAACATCCGAGG 8861748 36 100.0 37 ACATCCGAGG .................................... TCCAAGGACACACAGCCCTTGTCCTGGCGATAGACGC 8861821 36 100.0 36 CGATAGACGC .................................... CTGGAAGCCCACGGCGCGCAGGGCGGCAGCGACCTC 8861893 36 100.0 33 CAGCGACCTC .................................... AAAGCCTTCAATGCTAGCCTTGACACCCTTCTC 8861962 36 100.0 36 CACCCTTCTC .................................... CAGGCGGCTTCAGCGTGTATCCACGCTGCATCAGGC 8862034 36 100.0 35 TGCATCAGGC .................................... AGGACGCAGCGCGGGCTGTTCGTACAGTGAGGATT 8862105 36 100.0 35 AGTGAGGATT .................................... TCATGACTTGGCACCGTACAGGTGTGCCGCCACGG 8862176 36 100.0 35 GCCGCCACGG .................................... GGCATGCACTGCCAGATGGTGGCGCGCAACGCCTT 8862247 36 100.0 39 GCAACGCCTT .................................... GACCCGGACGGACACCGCAAGCGCGTGCGCGTCGGAAAC 8862322 36 100.0 37 CGTCGGAAAC .................................... TGACAGCGCCCCATCCGCTTGCCGTGGTGCGTCAGCA 8862395 36 97.2 TGCGTCAGCA ................................A... AGCCCGCCTG ========== ====== ====== ====== ========== ==================================== 23 36 35 GTGCTCAACGCCTTTCGGCATCACGGCGAGCGGGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [6,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.30,-7.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [443,248] Score: 0/0.18 # # Final direction: R [0.27,0.78 Confidence: MEDIUM] >NC_008095 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 8579181 37 94.6 33 GCTCTGGGTG .................T............A...... CGCCCACCCGTCCACCACCCGGTGCGCCTCGCG 8579251 37 100.0 35 GCGCCTCGCG ..................................... TGGCCCAGGTACGCGAGGTCCACGGAGTCAGCGGT 8579323 37 97.3 31 AGTCAGCGGT ..........................T.......... CCCTCCGGTACTCCCCCACGTTGCTGGGTGA 8579391 37 94.6 34 TGCTGGGTGA ............AT....................... ACCTCGAAAACAGCACGCCGGCGGCGGCGTTCAG 8579462 37 94.6 36 CGGCGTTCAG .................T...............T... TATCCGGTCGGGCAAAGACTGGTTTGAGACTGCACG 8579535 37 97.3 34 AGACTGCACG ..............................A...... GCTGTGGCGCCAGGCCGTTGCGGTGCGCACTGAC 8579606 37 100.0 35 GCGCACTGAC ..................................... CCGCTGGCGGCCGGGTCCTTGTCCACGAGCATCAT 8579678 37 97.3 32 CGAGCATCAT ............................G........ GACAAGGCCCAGAAGGCCGGCGAGGCGAATGA 8579747 37 97.3 34 AGGCGAATGA .........T........................... GAAGCCGCCCGAAGCAGACTTGGTGATCTGCGAC 8579818 37 97.3 33 GATCTGCGAC .............T....................... TGCGCTCGCCGCCGCCGCATACCTCGTCTACAA 8579888 37 97.3 34 TCGTCTACAA ....................................A AGGCCGCCATCACCGACCGTAGCAACCTGGACGT 8579959 37 97.3 33 ACCTGGACGT ......G.............................. GTTCTCCGCGCTCGGCGCAAGCATCAGCGACCA 8580029 37 97.3 34 TCAGCGACCA ...............T..................... TCCACACGACCGTGACAGCAGCCGGGTGAATGCT 8580100 37 100.0 35 GGTGAATGCT ..................................... AACGTGACGTTCGAAGCGCTCGACGTCGACGGACA 8580172 37 100.0 33 TCGACGGACA ..................................... CCGGCAACCTTCGTCTAGCAGGCGATCTTCGCG 8580242 37 97.3 33 GATCTTCGCG ......C.............................. CGCATCCAGGTGGCGCTGTTGTCCTCGCTTTAC 8580312 37 100.0 34 CTCGCTTTAC ..................................... ACGGAATCGGCCATCGGAGTGCGACAGGAATCGG 8580383 37 100.0 39 CAGGAATCGG ..................................... GCGCGTGTGGCGAGCAGCAGACGCCCGTGGGCGGGTTCA 8580459 37 100.0 34 GGCGGGTTCA ..................................... CAAGGGCTTCAAGCTGAACCTGTCCGCGCTCCAT 8580530 37 100.0 34 CGCGCTCCAT ..................................... GGCTGGATTGTCGTGGGTGTGCTCCGACCCCTGG 8580601 37 100.0 34 CGACCCCTGG ..................................... CGCGCGACATGGATGTGGTGCGCCAGCGACTCAT 8580672 37 100.0 33 AGCGACTCAT ..................................... TGCGGACGTTGCCCGCCGTCTGCGCGGGCTGGA 8580742 37 100.0 33 GCGGGCTGGA ..................................... CCAGTCAGCCACGCCGTCCCTCCCGGGCCACTC 8580812 37 100.0 33 CGGGCCACTC ..................................... TGAGCGCTGCGCGGTCTGCTGGGTCGGCATCAA 8580882 37 100.0 33 TCGGCATCAA ..................................... TGCGCCGGGCCCCTGGCGACCATCTACGGCGAT 8580952 37 100.0 35 CTACGGCGAT ..................................... CCGTAGACTTGGGGCTCGAAGAAGTGGACCGTCCC 8581024 37 100.0 35 GGACCGTCCC ..................................... GCTCGGGTGGCGGCGCTCGGCATCCCCGTGGTGCA 8581096 37 100.0 33 CCGTGGTGCA ..................................... CCTCCTCTTGGACGAATCGACGCGGATTGCGTC 8581166 37 97.3 35 GGATTGCGTC ........T............................ CAGCTCCCGGGCTGGCCCAAGCCCAGCGACGTGGA 8581238 37 100.0 33 GCGACGTGGA ..................................... CACGTAGGCGGCCTCAAGAGCCTCTGCTGGGGA 8581308 37 100.0 33 CTGCTGGGGA ..................................... TACGCGCCACTGGGACGGGCTTGCCGTGGGACG 8581378 37 100.0 33 CCGTGGGACG ..................................... GATCGTGCTCTTCCCGTTGAGCTGCTCGATCAG 8581448 37 100.0 35 GCTCGATCAG ..................................... TTTGCACGTCAGGTGGTAGGTGTCGGTTCGGATGG 8581520 37 100.0 32 GTTCGGATGG ..................................... GAGCTCGGCGCCAGGCTTCACCGTCAGATTGC 8581589 37 100.0 33 GTCAGATTGC ..................................... CACCATGAGGGACCAGCCGCGCATCTGCTCTCC 8581659 37 100.0 33 TCTGCTCTCC ..................................... GCACTGCGGCTCCTCGGCCTGCAAGCTGGGGCG 8581729 37 100.0 33 AGCTGGGGCG ..................................... GATCGTGCTCTTCCCGTTGAGCTGCTCGATCAA 8581799 37 100.0 34 GCTCGATCAA ..................................... GCCCGAACAGGTCCCCCACAACCGACGGCTCGAA 8581870 37 100.0 33 ACGGCTCGAA ..................................... GCCCCCGCGCTCGCCCAGTCCTACGACGTCTAT 8581940 37 100.0 36 CGACGTCTAT ..................................... CGAAGAGGAGCTCGCCCAGGGCATCCGCTGGGTGCT 8582013 37 100.0 35 GCTGGGTGCT ..................................... CGCGCGAGCCGCCCAGGTGCTACGACTCGCGAGGA 8582085 37 100.0 33 CTCGCGAGGA ..................................... CTGCTGCGCGGCAGCCTCGCAGGAGGCGGTGCA 8582155 37 100.0 34 AGGCGGTGCA ..................................... AAGGGGACAGATGGGGTGCCGGTGAATATGCACG 8582226 37 100.0 34 AATATGCACG ..................................... AAGGGGACAGATGGGGTGCCGGTGAATATGCACG 8582297 37 100.0 34 AATATGCACG ..................................... GCCCTCCGGAGCACCAGCGCAGACGGCCGCGCTG 8582368 37 100.0 33 GGCCGCGCTG ..................................... TCCCGCGTTCGGGAGTTGGAGTCCCAGCTCGCT 8582438 37 100.0 32 CCAGCTCGCT ..................................... CTGGTGGTGGGGAGGATGGGACAGGAGGGGAT 8582507 37 100.0 34 AGGAGGGGAT ..................................... AATGCCCCGTGGTTCTCCAGGCGGGCCCGGACGC 8582578 37 97.3 33 GCCCGGACGC ...................T................. GTCAGACTTCAGGGCCCTGCGCAGCCCCTCCTC 8582648 37 97.3 35 GCCCCTCCTC ...................T................. TTGACCGTGCCATCCATGTTCCCGAGGTAGTTGTT 8582720 37 97.3 32 GGTAGTTGTT ...................T................. AGAATCCGCTGTCACACCGCTGTCACAGCTTG 8582789 37 97.3 36 TCACAGCTTG ...................T................. TCGACAGCCACCAACGCGGTCCACAGCACCTGCCCG 8582862 37 97.3 37 CACCTGCCCG ...................T................. CGCGATCTGCGCATGGAGCTGCGCTTGGGCCTGCGTG 8582936 37 97.3 34 GGCCTGCGTG ...................T................. CCTGCCACTCGCACTCGTGGCCTTCAACCCTTCG 8583007 37 97.3 34 CAACCCTTCG ...................T................. ACGATGATCGCCAGGTGGTCCTGTGGACCATCCG 8583078 37 97.3 33 GGACCATCCG ...................T................. GCTGGAGCTGTTCCGGCTCGCCCGTGTGCCAGC 8583148 37 97.3 33 GTGTGCCAGC ...................T................. GATGGCGCTGGCTCTCGCCGCGTGTTCGGGCCC 8583218 37 97.3 GTTCGGGCCC ...................T................. TCTGCCCTTC ========== ====== ====== ====== ========== ===================================== 58 37 33 GTTTCAACCCACGCTCCCCGCGTTCACGAGGAGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [7,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.90,-9.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [36.7-40.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [433,184] Score: 0.18/0.18 # # Final direction: R [0.55,0.78 Confidence: LOW] >NC_008148 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2300783 30 100.0 38 CTGGAAATTT .............................. TAGGGCGAGCCGTAGTCTTCCCGGTACTGCTCCTCGGC 2300851 30 100.0 37 GCTCCTCGGC .............................. CATCATCACCGGTCACGTCGGGAGCCTGGGCGGCCTG 2300918 30 100.0 36 GGGCGGCCTG .............................. GCGGCCGCAGAGGAAGAAGGAGGAGGAAGAGGACTT 2300984 30 100.0 39 AAGAGGACTT .............................. GGACGCCGCGGTGCGGATGGGCGGCGGAGTACGTGTTGT 2301053 30 100.0 38 TACGTGTTGT .............................. CGCGAAGCTCGCGGGCAAGAACCCGCTGGTAGATAGGG 2301121 30 100.0 37 GTAGATAGGG .............................. GGCGCAATTTCGAGGATATCTTCGGGCGTGCGCCTTC 2301188 30 100.0 37 GTGCGCCTTC .............................. GTGAGAGCTCCCCCCAATGGAGGCCGCTCTCATGCCT 2301255 30 100.0 35 TCTCATGCCT .............................. GTAGTGATCGAGGGCTACCTTGGCCGCGAGAACCC 2301320 30 100.0 37 GCGAGAACCC .............................. ACATCCCCGGCTACCGCTTCTCCGCTGACTCGCGCCA 2301387 30 100.0 36 ACTCGCGCCA .............................. GGGCCGAGCCTGCCGGATGCTCGCAAAACGCCGGTA 2301453 30 100.0 39 AACGCCGGTA .............................. CCACGTGGGCGACTACCAGCTGGCTTCAAAGCCATGGAA 2301522 30 100.0 37 AGCCATGGAA .............................. GCTCCCGGATAGATATGCTGAGGAGGGGGGAGTTGGA 2301589 30 100.0 37 GGGAGTTGGA .............................. CCTCATGGGCGGCCTCCAGCTGCGGGATCCGCCCTAC 2301656 30 100.0 37 TCCGCCCTAC .............................. GACAAACTGGTAGTCCACCCTCTGGGAGTCTATCCAC 2301723 30 100.0 36 GTCTATCCAC .............................. GGGCTAGCCCCTCCTCGCCCGCCCGCAGGAGGACGG 2301789 30 100.0 36 AGGAGGACGG .............................. GGACTTTGTGGTGTCCCACCATGACCCGGTGGAGGT 2301855 30 100.0 37 CGGTGGAGGT .............................. GAGGCCCCCCTTCCGGGGGGCCGGTCCCCCAGGATCG 2301922 30 100.0 37 CCCAGGATCG .............................. GAGGAGGCGCGCAGGCAGCTGGAAGAGGGCAGCAAGG 2301989 30 100.0 37 GGCAGCAAGG .............................. CCTCCAGTCTGCGAAGACGACTGGAGGCTCGAACGCA 2302056 30 100.0 37 CTCGAACGCA .............................. GGGCCGCCTCGTCATCAGTCCCCGGAATGCCAATTAT 2302123 30 100.0 37 TGCCAATTAT .............................. TGCCACCCCGCGGGAGAAGCGCTCCAGCTCCTCCGAG 2302190 30 100.0 36 CTCCTCCGAG .............................. AGTCTGGGGCGTGGACGTACAGGGCGGGCCTTGCGG 2302256 30 100.0 36 GGCCTTGCGG .............................. CCGGGAGCTCGTCCGGGAGCTTGCCGCCAGGCGCTA 2302322 30 100.0 36 CCAGGCGCTA .............................. TCTCGAGGGCGGACCGGAGAGGGAAGTGAGAAAGAG 2302388 30 100.0 36 TGAGAAAGAG .............................. GGGCGGTGGGGCTCCTGTAGCCCCACCACCCTGAAG 2302454 30 100.0 36 CACCCTGAAG .............................. GGAGGCTCCCTCGCCGGAGGAGGTCTGGAGCCTCCT 2302520 30 100.0 37 GGAGCCTCCT .............................. TAGGGTTCGAAGCGTACCCTACTTGTTGCATGGCATG 2302587 30 100.0 39 GCATGGCATG .............................. ATATGGACGCCGTCGTCGTTGGGATTTGGGTCTACGGGT 2302656 30 100.0 36 GTCTACGGGT .............................. GAAGCTTATGCCGCCGTAGGACGCCCCGCTCTTTCG 2302722 30 100.0 37 CGCTCTTTCG .............................. CTCCGGGTCGGACCAGGCGTAGGAGCGCATCAGCGCG 2302789 30 100.0 37 CATCAGCGCG .............................. TTTTTCCACAGGGGCATAATCTCCTCAGCATCGAGTA 2302856 30 100.0 GCATCGAGTA .............................. CAACCTCGAA ========== ====== ====== ====== ========== ============================== 32 30 36 GTTTCAATCCCTTATAGGTAGGCTCAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.40,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [58.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1390,218] Score: 0.18/0.18 # # Final direction: R [0.45,4.87 Confidence: HIGH] >NC_008095 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 8884351 36 88.9 40 GAACCGACTA ....G............................--- GACCGCGTACCAAGCGCTCCGCGTCACGGATACCAGCCTT 8884427 36 97.2 39 TACCAGCCTT ..............G..................... GCCCGACGTCGTCCGCGTGAAGGGCGACCACTGGACCAC 8884502 36 97.2 34 ACTGGACCAC A................................... AAATGGCAGACGACAAGAAGAAGGACGGAGAAGC 8884572 36 100.0 34 ACGGAGAAGC .................................... TGGTGGGTTGGCGCCGTCTCGCGTCGAGTGCGAG 8884642 36 100.0 34 CGAGTGCGAG .................................... TCTTGGATGACTGCATTCGCAGCGCGCGTAATAG 8884712 36 100.0 36 CGCGTAATAG .................................... TATGTTCAATAAATATGACCCGTTCCATGGGTTCGG 8884784 36 100.0 38 ATGGGTTCGG .................................... GAAATCGACGGCGATATGTTGAAACACCCCGTGTGTTT 8884858 36 100.0 35 CCGTGTGTTT .................................... CAACGGCGGCAAGCTGCTGGCCACCGTGCTTGCAG 8884929 36 100.0 33 GTGCTTGCAG .................................... GAAGCCTTACGGCCTAACAGGCAATCTTCAAAC 8884998 36 100.0 36 ATCTTCAAAC .................................... GGAGAACGGCAATGGCGGGTGGTACTCCGGCTACGA 8885070 36 100.0 36 CCGGCTACGA .................................... TCCTGCGCGGCTTTCGCCGCACGGCCGCCATGGTGA 8885142 36 100.0 37 GCCATGGTGA .................................... CTGCGTACCGCGGCATCTCCATCTTCGTGAATGACTA 8885215 36 100.0 37 TGAATGACTA .................................... CGGGCAACTCGGCACCGGAGATCGCGGAGCACCCTCC 8885288 36 100.0 36 AGCACCCTCC .................................... GTTGACCGTCCCGGACCCACGCATCATCACTGTCAT 8885360 36 97.2 35 TCACTGTCAT .............................C...... CTTGCCAGTCAATTTCTGGCGCATCGCACGGAAGG 8885431 36 100.0 36 GCACGGAAGG .................................... CATAGGCCGCATCCGCTCAATCCGGCCGGACTTCTT 8885503 36 100.0 37 CGGACTTCTT .................................... ACCACCCAGTCGGCTACATGGGGCGCGACGGGGGTTT 8885576 36 100.0 34 ACGGGGGTTT .................................... CTCCTGATTTGAAGATGTCGTGCTCGTAGGCGAG 8885646 36 100.0 34 CGTAGGCGAG .................................... ATCGTCGCTTCCCCCTTCGTGATGCGGTTGTCCT 8885716 36 100.0 40 CGGTTGTCCT .................................... ACCAGATGGCCTTCTCGTCACGGCAGGTCGCCGCGATGTG 8885792 36 100.0 36 CCGCGATGTG .................................... CTGGAGCGCTGAAGCCGAATATCGGGCCTGCCTGGG 8885864 36 100.0 34 CCTGCCTGGG .................................... TGCGCTCGCACTCGACCTTGCCGCCCACCTCGGA 8885934 36 100.0 33 CCACCTCGGA .................................... ATTCAAGCCGGACGGCATCGTGCGAATGGCAGA 8886003 36 100.0 40 GAATGGCAGA .................................... CCGCTCAGTACCGCGCAGAGTACCTGAGCGCCGCCCTGAC 8886079 36 100.0 38 CCGCCCTGAC .................................... CACCCGCAGCACCGCAGAGGACACACGACATGGCGACG 8886153 36 100.0 33 CATGGCGACG .................................... TGAAGTCGAGGAGCTTCCTGGACTCGATACGAG 8886222 36 100.0 36 TCGATACGAG .................................... TGGACGGGAGAAGACGTTCACGGGGCGCGATGGGAG 8886294 36 97.2 37 GCGATGGGAG ..........................T......... CGCCCCGGACATGGCGCGGGCCGGGTTGGATGTCGTG 8886367 36 100.0 38 GGATGTCGTG .................................... CAGGGGACCGAGATACGCTTCGCATTGCACATCGCCGT 8886441 36 100.0 40 ACATCGCCGT .................................... TCTCTCGAACTCACCCAACGGCCGGGTTGGCCGGCCTCGA 8886517 36 100.0 34 CCGGCCTCGA .................................... TGAACCCAGCGCGCTCCACGGCCCCGGTGCCAGA 8886587 36 100.0 38 CGGTGCCAGA .................................... GCCAAGGCCCTGGACTACGCCCGGAGCGACCTCGCCGA 8886661 36 100.0 38 ACCTCGCCGA .................................... GCCAAGGCCCTGGACTACGCCCGGAGCGACCTCGCCGA 8886735 36 100.0 37 ACCTCGCCGA .................................... CTATGAACCCGTGAAGGGGACAATGGCCTTCTCATGG 8886808 36 100.0 35 CTTCTCATGG .................................... TCCCGCCTTGTCTCTCATGCAGTAGGAGGTAGCAC 8886879 36 100.0 37 GAGGTAGCAC .................................... CCATCCTTTTCGTCACGACGGCGAAGGCCAGACGCAC 8886952 36 100.0 36 CCAGACGCAC .................................... CGAACGCGCCGCCTTCGTCCTGATTGCCGAGGACAT 8887024 36 100.0 36 CCGAGGACAT .................................... CCGCCTCGCGCTGGCTGGCGCCCACCTGGAGCTGGA 8887096 36 100.0 38 TGGAGCTGGA .................................... GTTAACCAATTGCACAGGGTCAGCAAAAGCGTTGTTAG 8887170 36 100.0 38 GCGTTGTTAG .................................... CGGAGGACGCAAATGCAAATCAGGACTGAGTATAGTTT 8887244 36 100.0 35 AGTATAGTTT .................................... CCCATGCGGTGACCTTCAAGCATCGGAAGGTTCGA 8887315 36 100.0 37 GAAGGTTCGA .................................... CGGACCAGATTTTCGGTGTTCACCGCGAGGCCCAATT 8887388 36 100.0 39 AGGCCCAATT .................................... AACAGACCATGGAATGAGGCATTCGCCTCAGCCAATGGA 8887463 36 100.0 36 AGCCAATGGA .................................... CTGGAGCGCTGAAGCCGAATATCGGGCCTGCCTGGG 8887535 36 100.0 36 CCTGCCTGGG .................................... CTTGAGGGAGGACGACGACATGACGGTGAAGACGGA 8887607 36 100.0 35 TGAAGACGGA .................................... ACCACGTGCTCGTCGTCACGATGCTGGAGCGCGGC 8887678 36 100.0 35 GGAGCGCGGC .................................... TTGGCATGCACGCGCAGGTTGTCCGCGTGCCACGT 8887749 36 100.0 35 CGTGCCACGT .................................... CATCCATCTAGCCACCCGCCTGAGCGCATCAGGCC 8887820 36 100.0 35 GCATCAGGCC .................................... CTGACGGGCATGCGCGGCAGCCTGGAGAAGTACCT 8887891 36 100.0 37 AGAAGTACCT .................................... TCGCGCGCCCGTGGACGTGGGCCATCACCCACCACGG 8887964 36 100.0 34 CCCACCACGG .................................... TGCATGAGTCGAAAGAGATTTTGAAGCGCCGGAC 8888034 36 100.0 AGCGCCGGAC .................................... AGCCCATCTG ========== ====== ====== ====== ========== ==================================== 52 36 36 GTGCTCAACGCCTTCCGGCATCACGGCGAGCGGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.30,-7.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [35.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [134,303] Score: 0.18/0.18 # # Final direction: R [0.37,1.23 Confidence: MEDIUM] >NC_008148 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 262283 30 100.0 36 TCGACGAGTG .............................. AGCGTGCCACGTGTACGCTCTCCTGCACTCCTGGTC 262349 30 100.0 35 ACTCCTGGTC .............................. TTCCTTGCGCACCTCCGGCGTCACGTCCGAGAGGT 262414 30 100.0 37 TCCGAGAGGT .............................. GGGTTCGAAGCGTACCCTACTTGTTGCCTACAGTATG 262481 30 100.0 37 CTACAGTATG .............................. AGGCTGGTCACAGTGTAGCGGGGCGATAGGCCGGTGT 262548 30 100.0 37 AGGCCGGTGT .............................. GGGCCTCCCCCCTCATGGATCTTCCCCCCTGGGACGA 262615 30 100.0 38 CCTGGGACGA .............................. TCGTAGCGGTCTCGCAGGGCCTCGAAGGAGTGCTCCCT 262683 30 100.0 36 AGTGCTCCCT .............................. CTCCCAGGGGCGTAGGCCCTACATGAGCGCCTCCCT 262749 30 100.0 35 GCGCCTCCCT .............................. CCGGTAGCTGCCCTCGCGTACGCCGCATCCCGCCG 262814 30 100.0 35 CATCCCGCCG .............................. CTCCTTCCGCTTCCGGGCCAGATAAAGTTCTACCG 262879 30 100.0 37 AGTTCTACCG .............................. TCGAGCCGTTTTTCGGCTCGGGGGCACTGTTTTTCAG 262946 30 100.0 37 TGTTTTTCAG .............................. CGGAGGCCCTGAAGGCCGGTGGCTACAACACCAGGCG 263013 30 100.0 35 ACACCAGGCG .............................. TCGGGCGTCGCGAAGGCCTACGACTTTCGCGAGAC 263078 30 100.0 35 TTCGCGAGAC .............................. TCGGGCGTCGCGAAGGCCTACGACTTTCGCGAGAC 263143 30 100.0 37 TTCGCGAGAC .............................. CATAAAGAGGCTCAAGGAGCATGAGAACGAGAGAGAG 263210 30 100.0 CGAGAGAGAG .............................. CCAACCTCGA ========== ====== ====== ====== ========== ============================== 15 30 36 GTTTCAATCCCTTATAGGTAGGCTCAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.40,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [35.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [79,160] Score: 0.18/0.18 # # Final direction: R [0,5.32 Confidence: HIGH] >NC_008150 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 2201161 31 100.0 29 TGTCTTTCAT ............................... GAAAAGGTAAGATGGGCAAGCTTCTAGTA 2201221 31 93.5 29 GCTTCTAGTA .T...................A......... ATTATCTGAATGGCATTTTCTTTGGCGCA 2201281 31 100.0 29 CTTTGGCGCA ............................... TCGCCATTCCGTGAACCTGAGCGCGTTCG 2201341 31 90.3 29 AGCGCGTTCG CGA............................ ACATCACTAGCGGTATCGAACAATTGAGC 2201401 31 96.8 ACAATTGAGC ..G............................ TCAGTCCCGTTATGGTGCTGGTGTTGCCCGTAAG ========== ====== ====== ====== ========== =============================== 5 31 29 GATTTTCTAAGCTGCCTGTGCGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [51.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [418,401] Score: 0/0.18 # # Final direction: R [0.68,0.74 Confidence: LOW] >NC_008150 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 985580 28 100.0 32 ATTATCTTAC ............................ ATGTTCGACGATTTATTTTATTTGTATTTCAG 985640 28 100.0 32 TGTATTTCAG ............................ ATTTATTAAAGATGCTGACAAAAAGAACTTAA 985700 28 100.0 AAGAACTTAA ............................ GTCAACGCTTCACTCCCTGCGCGGGGTATAAC ========== ====== ====== ====== ========== ============================ 3 28 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [496,96] Score: 0.18/0.18 # # Final direction: F [1.69,0 Confidence: HIGH] >NC_008253 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 939486 20 100.0 40 NNNNNNNNNN .................... CTTAGAAAGCACACGTCGAGCTGGTGGGGATTAATGCTGG 939546 20 100.0 40 NNNNNNNNNN .................... CTTAGAAATTGCCGCGGATCCTGTCTGCCAATAATGACAA 939606 20 100.0 1 NNNNNNNNNN .................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================== 3 20 40 GTTCACTGCCGTACAGGCAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [4,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [214,393] Score: 0/0.18 # # Final direction: NA [0,0 Confidence: NA] >NC_008255 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 1585296 19 100.0 23 NNNNNNNNNN ................... TAGCAGGCGCTGCTTTTTTAGCA 1585338 19 100.0 23 NNNNNNNNNN A.CGC...T.......... TAGCTGCCTTTTTAGCTGGAGCT 1585380 19 100.0 35 NNNNNNNNNN ................... TAACGGCCTTTTTAACCGCTTTCTTAGCAGGTGCT 1585434 19 100.0 50 NNNNNNNNNN .........G.AA...... TAACTGCTTTCTTAACTGCTTTTTTAGGAGCTGCTTTCTTCGCAGTAGTT 1585503 19 100.0 26 NNNNNNNNNN A..........AA....T. TCGCTGCCTTTTTAACTTTCGCAGCT 1585548 19 100.0 38 NNNNNNNNNN A.......T..A.....T. CTGCTTTTTTAAGAGTCTTCTTAACAGAAGATTTCTCT 1585605 19 100.0 1 NNNNNNNNNN ........T...TT...TG NNNNNNNNNN ========== ====== ====== ====== ========== =================== 7 19 32 GCTTTTTTAACTGCTTTCT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.42%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [5-16] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [418,117] Score: 0.18/0.18 # # Final direction: F [0.59,0.27 Confidence: MEDIUM] >NC_008262 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1054741 29 100.0 36 NNNNNNNNNN ............................. TAATTATAAGATTTACAAGACCTTTGAAGTTCAACA 1054806 29 100.0 37 NNNNNNNNNN ............................. AACCAACAAGACCCCACAAAGGAGCTAACATTAATTC 1054872 29 100.0 36 NNNNNNNNNN ............................. TTAATTAAATCAGCTCTATATTTAAAAGCATTGTCA 1054937 29 100.0 36 NNNNNNNNNN ............................. AGATAACACTATAACCTAACTTTCTATGCTGAGAAA 1055002 29 100.0 37 NNNNNNNNNN ............................. TTAGTAACTGCACCTTCATGATTTTGCAATTCAAGAG 1055068 29 100.0 36 NNNNNNNNNN ............................. GCTTAAAATGTTAGATAATAATACTACTAGTTCGGT 1055133 29 100.0 35 NNNNNNNNNN ............................. TTACCATTAAATTTACCGTTTAACTCTCCCTCCAA 1055197 29 100.0 37 NNNNNNNNNN ............................. TTATAGAAAAAGTATAAACAAATTTAGGCTCTATAGA 1055263 29 100.0 36 NNNNNNNNNN ............................. TTCATTATAAAGATAGAAGAAAACTATCTATTTATT 1055328 29 100.0 36 NNNNNNNNNN ............................. ACCATAATTATAAGACTTACAAGACCTCTCTAACTC 1055393 29 100.0 37 NNNNNNNNNN ............................. TTGGTAATATCCCACGGAATACAAAATGGAAAAGCTT 1055459 29 100.0 37 NNNNNNNNNN ............................. TTTAATTGTAGATGCAATCATATCATTTTTATCCATC 1055525 29 100.0 36 NNNNNNNNNN ............................. TACTATCATGAAGGTAGAAAAGTTCTTGATGAACAA 1055590 29 100.0 37 NNNNNNNNNN ............................. AAGTACAAAAACATCTTAGATTATAAGCTAGGGGACA 1055656 29 100.0 36 NNNNNNNNNN ............................. ATATAATAAAGGCAAGTAAATAAAAGATACTTCTTT 1055721 29 100.0 36 NNNNNNNNNN ............................. TGCATGCTAGGGTTACTATGGATTATATTTATTTAA 1055786 29 100.0 36 NNNNNNNNNN ............................. GTTTATTCAATTTAACTTTACTATTATAACTACCTA 1055851 29 100.0 36 NNNNNNNNNN ............................. TTATGATTCTGCAATTCGAGAGCTTTTTGAGTACAA 1055916 29 100.0 35 NNNNNNNNNN ............................. TTGAATTTACCATCAAGTTCTCCTTCTAAAGCCTT 1055980 29 100.0 36 NNNNNNNNNN ............................. TTTTCTTAACATCAAATACCTTATTTTCATCACCTT 1056045 29 100.0 36 NNNNNNNNNN ............................. TTTAAAGGCTACGCTTCGCTATGTCTGCGACGCCAC 1056110 29 100.0 36 NNNNNNNNNN ............................. CCATTACAACCAATAACAGTCACAACACAATAAGTA 1056175 29 100.0 37 NNNNNNNNNN ............................. ATACAAACTATAAAAAAATAGCTAAGATTATTATTAT 1056241 29 100.0 36 NNNNNNNNNN ............................. AGCAAGTAAACTTGCTATATGATGTTTTTTATCTTC 1056306 29 100.0 36 NNNNNNNNNN ............................. TATCATACATAATATTACCGTCATTATCCAAGTTAC 1056371 29 100.0 36 NNNNNNNNNN ............................. CAGAAAAAATTAAAGAGCATACGAGACCAATAAAAA 1056436 29 100.0 36 NNNNNNNNNN ............................. TTAAAAAAGAAATTAGCTATATTCTCCGCAGTCTTA 1056501 29 100.0 37 NNNNNNNNNN ............................. GTTCACGATTATCAATGACAACTGTTAAGTTACTTAA 1056567 29 100.0 36 NNNNNNNNNN ............................. GAACTTATAAAGAGTGGTAAGAGTGTCGGAGATATA 1056632 29 100.0 36 NNNNNNNNNN ............................. ACAAATTTCAATATCATTAAATGGTAAATCAGTTGA 1056697 29 100.0 36 NNNNNNNNNN ............................. ACAATATTCATCAACATTAACACTATTTTTCATACC 1056762 29 100.0 36 NNNNNNNNNN ............................. AACCTAAAAATAGGAGATACAGTATAAAGAGTAGAT 1056827 29 100.0 36 NNNNNNNNNN ............................. ATTTTGCGTTAAAAGTGTAAGAAGTTCTACAGGGAA 1056892 29 100.0 36 NNNNNNNNNN ............................. AATTACTATTAACAGTTTTAAGCTCATCAAGTTCTT 1056957 29 100.0 36 NNNNNNNNNN ............................. ACGCATAATGACACTATATACATAATACAAAGCAAC 1057022 29 100.0 35 NNNNNNNNNN ............................. TTTTCTATAAGCTGTACTTTTAGCTCCACCCATAA 1057086 29 100.0 36 NNNNNNNNNN ............................. TTGAAAATGTAATAACTCTTATTTTAAGAGAATATT 1057151 29 100.0 37 NNNNNNNNNN ............................. TTAATATTGGAGGAATTAATGAGATATAACTTTACGG 1057217 29 100.0 36 NNNNNNNNNN ............................. TTCTAGGAAAGGTTTTAAAAGTGCAGAAGAAGTCCA 1057282 29 100.0 36 NNNNNNNNNN ............................. AGAATAGAAACAATAATTGGTGCAAGTTCTTGTTCT 1057347 29 100.0 35 NNNNNNNNNN ............................. ACAAATCATATTTTCAAAAAGGTTCCTGTAGCTCA 1057411 29 100.0 36 NNNNNNNNNN ............................. TTCTAGGAAAGGTTTTAAAAGTGCAGAAGAAGTCCA 1057476 29 100.0 36 NNNNNNNNNN ............................. CTTTTTTTTAGCTCTGCAAGAAGTAAGCAGAACAAC 1057541 29 100.0 36 NNNNNNNNNN ............................. AGAATAGAAACAATAATTGGTGCAAGTTCTTGTTCT 1057606 29 100.0 35 NNNNNNNNNN ............................. ACAAATCATATTTTCAAAAAGGTTCCTGTAGCTCA 1057670 29 100.0 37 NNNNNNNNNN ............................. TTAAATTTTAGCCAATAGTAGTTAGAATCTTTATAAA 1057736 29 100.0 36 NNNNNNNNNN ............................. TTAATTTTGCCAGAGTAATTGATTTGATTTTTACAA 1057801 29 100.0 36 NNNNNNNNNN ............................. ATTTTATTTTACCTGCTAGCATATTCATTTTAGATG 1057866 29 100.0 36 NNNNNNNNNN ............................. AACGATAACGCAGATTACATGAGTGTTGTAATAAAT 1057931 29 100.0 37 NNNNNNNNNN ............................. AAAGTTTTTCTAGTAGCTTCTGCTACTCCTATATATT 1057997 29 100.0 36 NNNNNNNNNN ............................. ACTGTTGAATCAGGAATTTTAGACAATGCTTCTAAA 1058062 29 100.0 37 NNNNNNNNNN ............................. CTCATATCAGTTGGGTAGGATGGGAATCTATTACAAA 1058128 29 100.0 37 NNNNNNNNNN ............................. TCAGAATTTTTATTAATTTCACCTGAACTTTCTTCTA 1058194 29 100.0 37 NNNNNNNNNN ............................. GTTATTATTTCAACTTTTCTTTTTATCTCTTCATCCC 1058260 29 100.0 37 NNNNNNNNNN ............................. AGAAAGAAATCATTGACCCTATAGGGAAAAGCCAATT 1058326 29 100.0 35 NNNNNNNNNN ............................. TTATTCCCTAAAGCGTTCTTATTCCCTTTAGGAGC 1058390 29 100.0 35 NNNNNNNNNN ............................. TTATGTAACTAAGATTACAACTTTTATGAAATGGT 1058454 29 100.0 37 NNNNNNNNNN ............................. TTTATAATGCTCTCGTTGATCATCTGTTAGTTCAAAC 1058520 29 100.0 36 NNNNNNNNNN ............................. TTTTGATTTAACTCTACAAGCTTTAAGCAACTCTCT 1058585 29 100.0 37 NNNNNNNNNN ............................. TTGCTTTTTAAGACACATTCTAAATATGTGCCTTCAT 1058651 29 100.0 1 NNNNNNNNNN .................GAA....C..TA NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 61 29 36 GTTTTATATTAACTATGAGGAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [73.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [191,391] Score: 0.18/0.18 # # Final direction: R [0.41,0.45 Confidence: LOW] >NC_008278 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 513103 28 100.0 33 NNNNNNNNNN ............................ CGGGGGGCGATCATCTGCGGCACCTGCGAGGTG 513164 28 100.0 33 NNNNNNNNNN ............................ GCAGGTCGTCCTGTCGGCGCCGGCGTCGACTTC 513225 28 100.0 33 NNNNNNNNNN ............................ CCGTCGAAGCGGGCGATGTCGGCTACTGGGCCC 513286 28 100.0 33 NNNNNNNNNN ............................ CTCCCCGACGGGACGCTGACGACGATTCCGTCC 513347 28 100.0 33 NNNNNNNNNN ............................ CCCGGCTGACCCGATCTCACCCCGCGGGTCGAC 513408 28 100.0 33 NNNNNNNNNN ............................ CTCGTTCGGGTCAGCCACGGCGCCGCCACCTCT 513469 28 100.0 33 NNNNNNNNNN ............................ CGGGACGCCGCCGCCGAACGGGCAAGGCAGTGG 513530 28 100.0 33 NNNNNNNNNN ............................ GACCGTCAGTGTTGTAGCCGAGCGCTTCTGCTT 513591 28 100.0 33 NNNNNNNNNN ............................ CTCGGCGGCGAGTTTCGACGCGGCGGACACACC 513652 28 100.0 33 NNNNNNNNNN ............................ CCCGGACACGTCACGCCACATGTCCGAGAAGAA 513713 28 100.0 33 NNNNNNNNNN ............................ CTCTCCACCGGCGGAGACCACGCCGGCGTACCG 513774 28 100.0 34 NNNNNNNNNN ............................ GCACGGAGCCGCGCGGCACGGCCAGACCTCGTGG 513836 28 100.0 33 NNNNNNNNNN ............................ GGCGCCGAGCAGCGCGGCCAGCAGCGCCGCCTG 513897 28 100.0 33 NNNNNNNNNN ............................ GCTTCCCTGCGTCGCCTCGGAGGCCGCCGAGCG 513958 28 100.0 33 NNNNNNNNNN ............................ CGCGCCGATCAGGGCGCCGGCGCCGGGGGTGGG 514019 28 100.0 33 NNNNNNNNNN ............................ GGGGCGCAGGTCGAGCGCGACGTGGTGCGGGGG 514080 28 100.0 33 NNNNNNNNNN ............................ TCCAGCGTCGAGGTACCGTGCCACGCTCCTTTC 514141 28 100.0 33 NNNNNNNNNN ............................ GGCGCGGCCCGGTCTCCGCGCTTGGTTCGCCCT 514202 28 100.0 33 NNNNNNNNNN ............................ CCAGCCCCACGGCGAGTTGTCACCGGCCTGCAC 514263 28 100.0 33 NNNNNNNNNN ............................ CGGCACCCTCGTCTGCGTGAACGGGTCAACCAG 514324 28 100.0 33 NNNNNNNNNN ............................ CCCGTCCCGGCCGAGCGGGTACACCTTGCCGAT 514385 28 100.0 33 NNNNNNNNNN ............................ CCGGCCGACACTGTCATTCCAGCCGCGCGCCAC 514446 28 100.0 33 NNNNNNNNNN ............................ GTAGTCGCGGAGCACCAGGCCGTGGGTGGCGAC 514507 28 100.0 33 NNNNNNNNNN ............................ GTAGGCACTGTCCCGGTAGATCATAAACGGCGC 514568 28 100.0 33 NNNNNNNNNN ............................ GGAGATGCACGCTCGCGCCGAGGTCACCATCCG 514629 28 100.0 33 NNNNNNNNNN ............................ GGGCGAGTACGTGGGAGTGACCCTCGGCGACGA 514690 28 100.0 33 NNNNNNNNNN ............................ TGATCGCTGCGCCCATTGTGGTGACTCTGGACC 514751 28 100.0 33 NNNNNNNNNN ............................ CCGCACCATCAGCGACGCGATCGGCGCCGTCCT 514812 28 100.0 33 NNNNNNNNNN ............................ CCGGCGTTGGGTGCGGCCCCGGACGCGGTGCCA 514873 28 100.0 33 NNNNNNNNNN ............................ CCTCATGCCCATCGCCGCCGACCCGGCGATCCG 514934 28 100.0 33 NNNNNNNNNN ............................ TCAAGCTGCCCGAAAAAAAACCCGGCGGCGGCA 514995 28 100.0 33 NNNNNNNNNN ............................ TCGCGCGGCGGCGGCCCAGCCAACGATTTCCGG 515056 28 100.0 33 NNNNNNNNNN ............................ TGCCTGAGTTGCGCACCGGCGGCGGCGTACGGG 515117 28 100.0 33 NNNNNNNNNN ............................ GGCGCGGCCCGGTCTCCGCGGCTGGTTCGCCCT 515178 28 100.0 33 NNNNNNNNNN ............................ CCGACCTTGGGCCGTCCTGACGGCCTCGAGCTG 515239 28 100.0 33 NNNNNNNNNN ............................ CTGATTCGGTCTATCATTGATCATGGTGGTCCT 515300 28 100.0 33 NNNNNNNNNN ............................ GCTGGCCGGCCCCGGTCGCGCCGGCGAGCACGG 515361 28 100.0 33 NNNNNNNNNN ............................ CGCGGTCGGCGCGGTCGCCTCGATCGAGCCCGG 515422 28 100.0 33 NNNNNNNNNN ............................ CACGGCCTCCGGATCAAGACCGGTTCGAGTTTC 515483 28 100.0 33 NNNNNNNNNN ............................ TGACGAAGATGCGCCGATGTGCCGATCATGCAA 515544 28 100.0 33 NNNNNNNNNN ............................ CCTGCTCGGATGCGTCTTGGAATGGTCGGTGGC 515605 28 100.0 33 NNNNNNNNNN ............................ CTTGGTGTGGGCGGCCGGGCAGGTCGTCGGCTC 515666 28 100.0 33 NNNNNNNNNN ............................ GGCGGCGGTCGAGGCGCTCACCCACGTCGCGGC 515727 28 100.0 33 NNNNNNNNNN ............................ CTGGACAGCCTCCTCACCGACGGCGACGACGGT 515788 28 100.0 33 NNNNNNNNNN ............................ CCAGGAGACCAGCCGATGAGCGCCATCGAAGTC 515849 28 100.0 33 NNNNNNNNNN ............................ CGCTGGCTCGTTGGCCGCTACGGCCCGAACTGG 515910 28 100.0 33 NNNNNNNNNN ............................ CCTCCAGCTCGGAAGGACCCCCTGTGCCCGGCT 515971 28 100.0 33 NNNNNNNNNN ............................ CGCTGGCTCGTTGGCCGCTACGGCCCGAACTGG 516032 28 100.0 33 NNNNNNNNNN ............................ CCTCCAGCTCGGAAGGACCCCCTGTGCCCGGCT 516093 28 100.0 33 NNNNNNNNNN ............................ CGCTGGCTCGTTGGCCGCTACGGCCCGAACTGG 516154 28 100.0 33 NNNNNNNNNN ............................ CCTCCAGCTCGGAAGGACCCCCTGTGCCCGGCT 516215 28 100.0 33 NNNNNNNNNN ............................ GCCGCCTACCGGCTTCTACACCTGTCCGGGCTG 516276 28 100.0 33 NNNNNNNNNN ............................ GATTTGAAACAGCGTGAATATTCGGGGCCGCGG 516337 28 100.0 33 NNNNNNNNNN ............................ TTCGGGCCTGTGGCATGGGATCTGTTCGGGCAC 516398 28 100.0 33 NNNNNNNNNN ............................ TCCGCATCCCCGCCTCCGACATCCGCGACGGCG 516459 28 100.0 33 NNNNNNNNNN ............................ CCCTCTGACGATCGGCGCCGGCAGCTACTTCTC 516520 28 100.0 33 NNNNNNNNNN ............................ TTCGATCGCCTGGGAGATGAACGGCACCTACTT 516581 28 100.0 33 NNNNNNNNNN ............................ GGCAGACGACATGAGCTGGGGAGATGAGCGCCG 516642 28 100.0 33 NNNNNNNNNN ............................ CCGCGGCCTGTAGGCACAGGAACGCGCCGGTCA 516703 28 100.0 33 NNNNNNNNNN ............................ GCCGCTTACACGGCGTACCTGCGGGAGATCCCG 516764 28 100.0 33 NNNNNNNNNN ............................ CCTACAGGCCGCTGTCGGTGGCCTCGTCGACGT 516825 28 100.0 33 NNNNNNNNNN ............................ CTCCAACTCCAGTAGAGAGGGGGTCGCGCTGTG 516886 28 100.0 33 NNNNNNNNNN ............................ GTCACCGAGGTCGACCGTCTGCGCGCACTGGTG 516947 28 100.0 33 NNNNNNNNNN ............................ TTCGCAGGTCCCGGTGTCCCAGCGGGATCGCGG 517008 28 100.0 33 NNNNNNNNNN ............................ GCGGACATCAGCCAGCTCGAGCACCTCCGCCGG 517069 28 100.0 33 NNNNNNNNNN ............................ GGGTCGACGTCGTAGCGCGCGTCCCCTCGCCAG 517130 28 100.0 33 NNNNNNNNNN ............................ GCCGCTGTCCGCCGCCCGAATCGGCGAGCTGGC 517191 28 100.0 33 NNNNNNNNNN ............................ CCGGGACCGCTGCGGCTCCGGGATGCTCCCGAC 517252 28 100.0 33 NNNNNNNNNN ............................ CCGCTGTGCGTGACCCAGGAGACCGACAGGGAC 517313 28 100.0 33 NNNNNNNNNN ...........................T GGTCGGACGGACGGGCGGACACGTCCCGCAACG 517374 28 100.0 33 NNNNNNNNNN ............................ GAAGAAGGCCGCGACCCCCGCCACACCGACGGC 517435 28 100.0 33 NNNNNNNNNN ............................ TCTGCCGGCAAAGGGCGGCGGTCGGGCGCTGCG 517496 28 100.0 34 NNNNNNNNNN ............................ CCCGCGGCATTTGATCGGCCAGGGCGGTGAACGG 517558 28 100.0 33 NNNNNNNNNN ............................ CCCCGGGTAGCCCTCGGTGTCCGAGACGTCCAT 517619 28 100.0 33 NNNNNNNNNN ............................ TGGGTCCACGGCGTCGCCGCCGACCCGTTCCAG 517680 28 100.0 33 NNNNNNNNNN ............................ CCCCGAGTTGTAGACGCGGACGCCGGCGGACTC 517741 28 100.0 33 NNNNNNNNNN ............................ GCGCCGTCCCGGACTCGGCGTAGCGGGTGACGA 517802 28 100.0 33 NNNNNNNNNN ....C....................... TGAGTTAGCGATCATGTCGTTTTCGCGCATAGC 517863 28 100.0 33 NNNNNNNNNN ............................ GCCGAGCGTGAGGTGATGAAAGCCGACCTGCTC 517924 28 100.0 33 NNNNNNNNNN ............................ CGCGAGGAGGGGGGCGTTGAGCCGGACCCATCG 517985 28 100.0 33 NNNNNNNNNN ............................ GCACTCGGATCGGCACTCCCATCTGGCGCGGCG 518046 28 100.0 32 NNNNNNNNNN ............................ CTCACCCGGTCAACCTCCACCCTCCGGCCGAG 518106 28 100.0 33 NNNNNNNNNN ............................ TAGGAATTGACCTCACCGGGCCCGAGCGGGACG 518167 28 100.0 33 NNNNNNNNNN ............................ TCCCCGCGGCGCCGACGCGTTCGCTCGCGCATG 518228 28 100.0 33 NNNNNNNNNN ............................ TCGGTCGAGTCTCCTTAGCGGCGCTTCCTCTTG 518289 28 100.0 33 NNNNNNNNNN ............................ GCTGTTCATCAAGAACGGCTGGGCCCCGACGGG 518350 28 100.0 33 NNNNNNNNNN ..........T................. TCCGCCGGTACCCGACGCGCCGATGGCCATTGC 518411 28 100.0 33 NNNNNNNNNN ............................ CCCCACCACCGGCACCTGGACCCCGACCGACAG 518472 28 100.0 33 NNNNNNNNNN ............................ CGCGGGATCACCCGAGTTGGCGCTCGGGCCCCG 518533 28 100.0 33 NNNNNNNNNN ............................ TCTCTATTTCGCCGAGAACCACACGCCGACGAA 518594 28 100.0 33 NNNNNNNNNN ............................ GATGGTGGCGGTGGGCGGCGCGTCGTAGGTGAC 518655 28 100.0 31 NNNNNNNNNN ..........T......A.......... GCCCCGCCAGGATGATCATGGGGTGCGGACG 518714 28 100.0 33 NNNNNNNNNN ......T.............A....... TCTCCCGTTCGGCGGCCAGCACAGCTTGGGCGG 518775 28 100.0 1 NNNNNNNNNN ...........T.....A.......... NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 94 28 32 GTCGTCCCCGCCCGCGCGGGGATCTTCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-12.20,-13.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [45.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [369,263] Score: 0/0.18 # # Final direction: R [0.68,0.74 Confidence: LOW] >NC_008268 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 746300 29 100.0 73 NNNNNNNNNN .GCCGGT...................... TCGTACTCGCCGGTCTCCTCCTCCGGCTCCTCCTCCCCCGGCTCCTCCTCCTCGTACTCGCCGGCCTCGTCCT 746402 29 100.0 49 NNNNNNNNNN ....G.T...................... GGCTCCTCCTCCCCCGGCTCCTCCTCCTCGTACTCGCCGGCCTCGTCCT 746480 29 100.0 49 NNNNNNNNNN ....G.T...................... GGCTCCTCCTCCCCCGGCTCCTCCTCCTCGTACTCGCCGGCCTCGTCTT 746558 29 100.0 34 NNNNNNNNNN ............................. GGCTCCTCCTCCTCGTACTCGCCGGTCTCCTCCT 746621 29 100.0 22 NNNNNNNNNN ............................. TCGTACTCGCCGGCCTCGTCTT 746672 29 100.0 19 NNNNNNNNNN ............................. GATTCCTCGTCCTCGTACT 746720 29 100.0 22 NNNNNNNNNN .GCCGGT...................... TCGTACTCGCCGGTCTCCTCCT 746771 29 100.0 34 NNNNNNNNNN ............................. GGCTCCTCCTCCTCGTACTCGCCGGCCTCGTCCT 746834 29 100.0 1 NNNNNNNNNN .................TA...GC.GG.. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 9 29 37 CCGGCTCCTCCTCCTCGGGCTCCTCCTCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-1.30,-1.10] Score: 0/0.37 # Array degeneracy analysis suggestion: F [6-12] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [31.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [477,1014] Score: 0.18/0.18 # # Final direction: R [0.41,0.82 Confidence: MEDIUM] >NC_008278 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1725539 30 100.0 40 TTACTATGGG .............................. TGCAGACGCCCTTGCGTGGGCAACAGCACACATCCTGACA 1725609 30 100.0 38 CATCCTGACA .............................. AGGGCCGTTTCGATGTGACTGTTGGTGGCGCTGTGCAG 1725677 30 100.0 36 CGCTGTGCAG .............................. TTCGGCTACCTGCACGGCGCGCCTCCGCCGGCCCAC 1725743 30 100.0 39 GCCGGCCCAC .............................. TTGGGTAGCTGGTTGATACCCGGGATGATGGCATCCCCG 1725812 30 100.0 35 GGCATCCCCG .............................. GGCATCTCCGTGTGGACGTAGTGCGGCCGTACGAG 1725877 30 100.0 39 GCCGTACGAG .............................. AAGGGACGCCCGAGGCGCCTCGACGCGTTCGCCTGGGGG 1725946 30 100.0 38 CGCCTGGGGG .............................. TACAGACCACGTTCAGGGCCGAGCGTGATGAGTGCGCG 1726014 30 96.7 36 TGAGTGCGCG .......................C...... AGACGCAGATGTGGGAGCTCCCGGAAGTCGTCCGCG 1726080 30 100.0 34 GTCGTCCGCG .............................. ATGACACGCGTACGCTCCACCACCGGTTCACCAG 1726144 30 100.0 33 GGTTCACCAG .............................. ATCGGCCCGTAGCGGGCGATGCTTTCCTCATTG 1726207 30 100.0 40 TTCCTCATTG .............................. TCAACGCCGAGCAGGCCCACGGCGACGACGGGTCGGGTCG 1726277 30 100.0 34 GGTCGGGTCG .............................. TGTCGACGACGAAGCCGCCGCCGGTCCAGCGCAG 1726341 30 100.0 37 TCCAGCGCAG .............................. CGGTGAGCTCACCGACGACCAGATCGCCGAACTCGAC 1726408 30 100.0 34 CGAACTCGAC .............................. CTGCTCACCGCGACGGCAAACAGCGGCGCCACGT 1726472 30 100.0 39 GGCGCCACGT .............................. TCTTTCCCGAGCCGGTGCCCGCGACAACCGCGAAATGCG 1726541 30 100.0 38 GCGAAATGCG .............................. CAGAGCTGATCATGCAGGAGACGCTGCCCGACGTACCC 1726609 30 100.0 35 CGACGTACCC .............................. TCGGGCGTCAGGAGGTCGGCGGAGCGGCCTTGCGC 1726674 30 100.0 32 GGCCTTGCGC .............................. GCTATTTCCGCCTATTCTTGACCTACCGGCGG 1726736 30 100.0 35 CTACCGGCGG .............................. ATCGCGAGCATGTTGACCAGCCCGACGTCGAGCAG 1726801 30 96.7 33 CGTCGAGCAG ....................C......... GCCGGCGAACGGCGCCGGGCCCGACCCGCGCGA 1726864 30 100.0 ACCCGCGCGA .............................. AAATCGTCAC ========== ====== ====== ====== ========== ============================== 21 30 36 GTCGCTGATCATCCCTGGAGGGATCGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [6,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-5.70,-5.80] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [43.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [130,97] Score: 0/0.18 # # Final direction: F [0.68,0 Confidence: HIGH] >NC_008268 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 3918433 19 100.0 23 NNNNNNNNNN ................... GTGTCGTCGGGACCGTCACGCCG 3918475 19 100.0 23 NNNNNNNNNN ................... TGGCCGAGGGGTCGGTGACGCCC 3918517 19 100.0 23 NNNNNNNNNN ................... TGGCCGAGGGGTCGGTGACGCCC 3918559 19 100.0 1 NNNNNNNNNN .............AC.... NNNNNNNNNN ========== ====== ====== ====== ========== =================== 4 19 23 GGCTGCGACGTGGTGGGCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [15.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [719,384] Score: 0/0.18 # # Final direction: R [0.41,0.64 Confidence: LOW] >NC_008278 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 528923 28 100.0 33 ATCAGCAAGG ............................ CGTGCCTCCGTGAGGTAGACGTGGATGGTGAGC 528984 28 100.0 33 GATGGTGAGC ............................ ACCATCCCACGCACCCTTGATCCAGCCGGTGGC 529045 28 100.0 33 AGCCGGTGGC ............................ GCGCATCCCGGCGGCGCGCAGCCGGTCCAGGTA 529106 28 100.0 33 GGTCCAGGTA ............................ CCACAGGTCGTCGACCCCGCGGTCCTGGAGCTC 529167 28 100.0 33 CCTGGAGCTC ............................ GCTAACGACGTGCACGATCTCCGCCGCGGTGAG 529228 28 100.0 33 CCGCGGTGAG ............................ GCCCATCGCCAGCTTGATTTCCGTGTCGGGGTG 529289 28 100.0 33 TGTCGGGGTG ............................ CCTGGCCGCGGCGCTGGCCGAGCTGGGGGAGCG 529350 28 100.0 33 TGGGGGAGCG ............................ CGTCTCGTAGGCGATCTTCACGTCGCCGTTGTG 529411 28 100.0 33 CGCCGTTGTG ............................ CCCGCCGACCAGGCGCGACGCGTGAGGCGACCA 529472 28 100.0 33 GAGGCGACCA ............................ GCCCTCCAAACCGGCGCCATGCTCGTCTCGGCG 529533 28 100.0 33 CGTCTCGGCG ............................ GACGGTCACTTCACCCGGCACCGGCGGCGGCCA 529594 28 100.0 33 GCGGCGGCCA ............................ CTCGACCAACATGCCCATGGCGCGGCCCATCCG 529655 28 100.0 33 GGCCCATCCG ............................ GATTTTGAACGCCGAGACGAAGCTGACGGAGGC 529716 28 100.0 33 TGACGGAGGC ............................ TGAACGCGCGAGTCCGCGGTGGGGTGTTCGTTG 529777 28 100.0 33 GTGTTCGTTG ............................ TCACGGCCGGAAGCGGGAGATCGCGGTAGAACC 529838 28 100.0 33 CGGTAGAACC ............................ TGCGACTGAGATATCGGAGGATGTTCAGTGACT 529899 28 100.0 33 TTCAGTGACT ............................ GTGCTGCTCAATACGACGGGGGCCGCCGAAATA 529960 28 100.0 33 CGCCGAAATA ............................ CTCCTTAGCCGATGTGATCGAAAATTTTGCCCG 530021 28 100.0 33 ATTTTGCCCG ............................ CGACGTCCGACGACGAGCCCGCCCTGAGGGACT 530082 28 100.0 33 CTGAGGGACT ............................ GGCCCACGCGGGCAGGAGTCCGCTGGGGCGCCC 530143 28 100.0 33 TGGGGCGCCC ............................ TCCGCCGGCTCACCCGGATTGTTCACACCACGC 530204 28 100.0 33 CACACCACGC ............................ GCCGCAGGTCAGGCCGAGGACGGATTTTCCGGC 530265 28 100.0 33 ATTTTCCGGC ............................ CGCCAACTCGCCGGAGTGCGGGTGCACGCCGGG 530326 28 100.0 33 GCACGCCGGG ............................ CGTGTGTTCGATACGGTGGTGGGGTGCTGGTGG 530387 28 100.0 33 GTGCTGGTGG ............................ CCTGCCGACCGGTCACGAACCCGTCGTCCCCGA 530448 28 100.0 TCGTCCCCGA ............................ GGACTCTGGG ========== ====== ====== ====== ========== ============================ 26 28 33 GTCGTCCCCGCCCGCGCGGGGATCGTCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-12.20,-13.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [20,97] Score: 0.18/0.18 # # Final direction: R [0,0.92 Confidence: HIGH] >NC_008278 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 6604433 30 100.0 37 CCGCAGCCAT .............................. GCGCCCTCGGCGTCGCCGGGATGGCCGTCCAGGAGCT 6604500 30 96.7 38 TCCAGGAGCT ...............A.............. ATGAGTTGGCTGACGCCGGCCATCCGGGACATGCAGGG 6604568 30 96.7 35 ACATGCAGGG .....T........................ CTCATCCGCGGCATCCCCGCCGGCTACCCCTGGCT 6604633 30 96.7 33 ACCCCTGGCT .....T........................ GCCTCCCCCGCGGTCCCCGTGGGGCATCCCCGA 6604696 30 100.0 GCATCCCCGA .............................. CCCATAGTAA ========== ====== ====== ====== ========== ============================== 5 30 35 GTTGCGATCCCTCTAGGGATGATCAGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-5.80,-5.70] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [31.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [367,279] Score: 0/0.18 # # Final direction: R [0,1.05 Confidence: HIGH] >NC_008278 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 6036633 30 100.0 35 TTACCATGGG .............................. GAATTTCCGCCTCCGTCTCGGAGGCGAAGTAGGCA 6036698 30 93.3 34 GAAGTAGGCA .....G....C................... GCCGCGGCGCCACCCAGGGCGAGGCAGCCCGCGT 6036762 30 96.7 35 CAGCCCGCGT ........................T..... GTGACCGTGTCGACGAACAGCGCGGTGCTGATCAC 6036827 30 100.0 37 TGCTGATCAC .............................. TGACCGGCCGCCGGCAGGACCTCGCCGCCAGCTCCAT 6036894 30 100.0 35 CCAGCTCCAT .............................. ATCGTCACGGGCGGCCGGTGGGGGGGCCGTCTGCC 6036959 30 100.0 34 GCCGTCTGCC .............................. GGCAGCTCGCACTCGAACCAGTCGTACGCGTCGA 6037023 30 96.7 40 TACGCGTCGA ..A........................... GCGAGCAGGTCCTGGCGCGTGTTCTGCGGCAGATCGGCCA 6037093 30 96.7 34 AGATCGGCCA ..........C................... AGAGCATCACGCGGGCGCCCTGCGCGAGCATGAG 6037157 30 100.0 34 CGAGCATGAG .............................. GCGTCTGGGCCGACCCCGGCCGGGACCCCCGCGG 6037221 30 100.0 ACCCCCGCGG .............................. GCGGCCGCCG ========== ====== ====== ====== ========== ============================== 10 30 35 GTCGCTGATCATCCCTGGAGGGATCGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [6,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-5.70,-5.80] Score: 0/0.37 # Array degeneracy analysis suggestion: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [35.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [112,162] Score: 0/0.18 # # Final direction: R [0.27,0.41 Confidence: LOW] >NC_008312 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 1606273 20 100.0 78 NNNNNNNNNN ...............T...C CAATTATCAGTTTTTTGATTTATTAGTATTAGTACCTCCAGTTAAAACTTCAGTTCAGAGTTTTTTTCAGTTATAAGT 1606371 20 100.0 79 NNNNNNNNNN .................... TTAGTTATTAGCTATTAGTATCTCAAATTCAAGCTTCAATTATCAGCTTTTTCATTTCTTAGCTTTTTCATTTCTTAGC 1606470 20 100.0 64 NNNNNNNNNN .................... TCAGTTATCAGCTTTTTGATTTATTAGCTATTAGTACCTCCGATCCAAGCTTTAATTATCAGTT 1606554 20 100.0 49 NNNNNNNNNN ..........C.T..T.... TCAGTTATCATTTATCAGTTATCAATTATCAGTTTTTTCAGTTATCAGC 1606623 20 100.0 32 NNNNNNNNNN .....G.T....T....A.. AGTACCTCCGATCCAAGCTTTAATTATCAGTT 1606675 20 100.0 47 NNNNNNNNNN ............T.TT.A.C AGTTATCATTTATCAGTTATCATTTATCAGTTTTTTCAGTTATCAGC 1606742 20 100.0 31 NNNNNNNNNN .....G.T....T....A.. AGTACCTCCAGTTCAAGCTTCAGTTATCAAC 1606793 20 100.0 65 NNNNNNNNNN .....T....G.G....A.. AGTACCTTCAGTTCAAGCTTTAATTATCAGTTTTTTTTCAGTTATTAACTTTTTCAGTTATCAGC 1606878 20 100.0 49 NNNNNNNNNN .................... TTAGTTGTTAGCTATTACTACCTCCATTTCAAGCTTTAATCATCAGTTT 1606947 20 100.0 47 NNNNNNNNNN .................... TCAGTTATCAGCTTTTTGATTTATTAGTTATGAGTACCTTCAGTTAA 1607014 20 100.0 44 NNNNNNNNNN AGC....A............ TCAGTTCTTATATTTTTCAGTTCTTAGCCTTTTTAGTCATCAAC 1607078 20 100.0 60 NNNNNNNNNN .........C.......... TTAGTTATTAGTTATTAGCACCTCCAGTTAAAGCTTCATTTATAACTCAGTTATTAACCT 1607158 20 100.0 48 NNNNNNNNNN .....T.C....A.T..... TTAGTTATTAGCTATTAGTAACTTCAGTTTAAGCTTCAATCATCAGCT 1607226 20 100.0 27 NNNNNNNNNN .....T..C...T.AA.... TCAATTATTGGCTTTTTTAGTTATCAG 1607273 20 100.0 1 NNNNNNNNNN .......AGGG.T.A..... NNNNNNNNNN ========== ====== ====== ====== ========== ==================== 15 20 51 TTTTTCAGTTATCAGCTTTT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [9-20] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [36,7876] Score: 0.18/0.18 # # Final direction: F [0.41,0.18 Confidence: MEDIUM] >NC_008312 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 2941350 20 100.0 38 NNNNNNNNNN .................... TTTAGGTTTTAGGTTTTAGGTTTTAGGTTTTAAGTTTT 2941408 20 100.0 60 NNNNNNNNNN .................... TTTAGGTTTTAGTTTTTAGGTTTTAAGTTTTAGGTTTTAAGTTTTAGGTTTTTAAGTTTT 2941488 20 100.0 33 NNNNNNNNNN ...............TTT.. GTTAATTTTCTGAGGTTTTAGGTGGTAGGTTTT 2941541 20 100.0 38 NNNNNNNNNN ..AC................ TTTAGGTGGCAGGTTTTAGGTTTTAGGTTTTAAGTTTG 2941599 20 100.0 49 NNNNNNNNNN .................... GTTAATTTTTTGAGGCGTCAATTTTTTGAGGTTTTAGGTGGTAGGTTTT 2941668 20 100.0 38 NNNNNNNNNN ..AC................ TTTAGGTTGCAGGTTTTAGGTTTTAGGTTTTAAGTTTG 2941726 20 100.0 49 NNNNNNNNNN ......T............. GTTAATTTTTTGAGGCGTCAATTTTTTGAGGTTTTAGGTGACAGGTTTT 2941795 20 100.0 40 NNNNNNNNNN ......T............. TTTAGGTTGCAGGTTTTAGGTGTTAGGTGTCAATTTTTTG 2941855 20 100.0 1 NNNNNNNNNN ......T............. NNNNNNNNNN ========== ====== ====== ====== ========== ==================== 9 20 43 AGGTGTCAATTTTTTGAGGT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [3-2] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [77,2314] Score: 0.18/0.18 # # Final direction: R [0,0.18 Confidence: MEDIUM] >NC_008312 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 612915 25 100.0 83 NNNNNNNNNN .....AG.T........G....... TTGGACCTACAGGACCAGTGGCACCAATAGGACCAGCCGGACCTACAGGACCTACAGGACCAGTAAAACCAGGAGCACCATCA 613023 25 100.0 74 NNNNNNNNNN .CT..AG.C................ TGGCACCAATAGGACCAGCCGGACCTACAGGACCTACAGGACCAGTAAAACCAGGAGCACCATCAGCTCCAGCC 613122 25 100.0 74 NNNNNNNNNN ......................... GGGCACCACTTGGGCCTATAGGACCTACAGGACCTATTGGACCAGCGGGACCAGGAGCTCCAGCAGGACCTACA 613221 25 100.0 56 NNNNNNNNNN .......TT.....AG.G....... GAGCTCCAGCAGGACCAGCAAGACCAGGAACACCATCAGCTCCAGCCGGACCCACA 613302 25 100.0 56 NNNNNNNNNN .......TT................ GAGCTCCAGTTGGACCTACAGGACCTACAGGACCTACAGGACCAGGGGCACCACTT 613383 25 100.0 38 NNNNNNNNNN .......T......A.TG....... TAAGACCAGGAACACCATCAGCTCCAGCAGGACCTACA 613446 25 100.0 56 NNNNNNNNNN .......TT.....AG.G....... GAGCTCCAGCAGGACCAGCAAGACCAGGAACACCATCAGCTCCAGCCGGACCCACA 613527 25 100.0 56 NNNNNNNNNN .......TT................ GGGCACCACTTGGACCTATAGGACCAATGGGACCAGGAGCTCCAGTTGGACCTACA 613608 25 100.0 38 NNNNNNNNNN ......................... CAAGACCAGGAATACCATCAGCTCCAGCCGGACCCACA 613671 25 100.0 56 NNNNNNNNNN .......TG................ GGGCACCACTTGGACCTATAGGACCAATGGGACCAGGAGCTCCAGTTGGACCTACA 613752 25 100.0 47 NNNNNNNNNN .......TT.....AG......... CAAGACCAGGAACACCATCAGCTCCAGCCGGACCTACAGGACCTATT 613824 25 100.0 65 NNNNNNNNNN ..............AG......... CAAGACCAGGAACACCATCAGCTCCAGCAGAACCTACAGGACCTACAGGACCTACAGGACCTATT 613914 25 100.0 38 NNNNNNNNNN ..............AG..A...... GAACACCATCAGCTCCAGCCGGACCCACAGGACCTATC 613977 25 100.0 47 NNNNNNNNNN ..............AG.G....... GAGCTCCAGCAGGACCAGCAAGACCAGGAACACCATCAGCTCCAGCG 614049 25 100.0 20 NNNNNNNNNN ................TT....... CTGGACCAGGAGCTCCAGCA 614094 25 100.0 29 NNNNNNNNNN ......................... CAAGACCAGGAACACCATCAGCTCCAGCC 614148 25 100.0 20 NNNNNNNNNN .....C..........TT....... CTGGACCAGGGGCTCCACTT 614193 25 100.0 29 NNNNNNNNNN .......T......A.TG....... TAAGACCAGGAACACCATCAGCTCCAGCC 614247 25 100.0 29 NNNNNNNNNN .....C..........TT....... CCGGACCAGGGGCTCCAGTTAGACCTATA 614301 25 100.0 20 NNNNNNNNNN .......................CA CAGGACCAGGAGCACCAGTT 614346 25 100.0 38 NNNNNNNNNN ......................... CAAGACCAGGAACACCATCAGCTCCAGCCGGACCCACA 614409 25 100.0 20 NNNNNNNNNN .......TT................ CGGGACCAGGGGCACCACTT 614454 25 100.0 29 NNNNNNNNNN .......T......A.TG....... TAAGACCAGGAACACCATCAGCTCCAGCT 614508 25 100.0 38 NNNNNNNNNN ................TT....... CCGGACCAGCGGGACCAGGAGCTCCAGTAGGACCTACA 614571 25 100.0 47 NNNNNNNNNN .......................TA CAGGACCTACAGGACCAGCAAGACCAGGAACACCATCAGCTCCAGCC 614643 25 100.0 20 NNNNNNNNNN .....C..........TT.....TA CAGGACCAGGGGCACCACTT 614688 25 100.0 29 NNNNNNNNNN .......T......A.TG....... TAAGACCAGGAACACCATCAGCTCCAGCC 614742 25 100.0 38 NNNNNNNNNN ................TT....... CCGGACCAGCGGGACCAGGAGCTCCAGTAGGACCTACA 614805 25 100.0 29 NNNNNNNNNN ......................... CAAGACCAGGAACACCATCAGCTCCAGCT 614859 25 100.0 29 NNNNNNNNNN ................TT....... CCGGACCAGGGGCTCCAGTTAGACCTATA 614913 25 100.0 20 NNNNNNNNNN .......................CA CAGGACCAGGAGCACCAGTT 614958 25 100.0 38 NNNNNNNNNN ......................... CAAGACCAGGAACACCATCAGCTCCAGCCGGACCCACA 615021 25 100.0 20 NNNNNNNNNN .......TT................ CGGGACCAGGGGCACCACTT 615066 25 100.0 29 NNNNNNNNNN .......T......A.TG....... TAAGACCAGGAACACCATCAGCTCCAGCT 615120 25 100.0 47 NNNNNNNNNN ................TT....... CCGGACCAGCGGGACCAGGAGCTCCAGTAGGACCTACAGGACCTACA 615192 25 100.0 38 NNNNNNNNNN ......................... CAAGACCAGGAACACCATCAGCTCCAGCCGGACCCACA 615255 25 100.0 65 NNNNNNNNNN .......TT................ GGGCACCACTTGGACCTATAGGACCAATGGGACCAGTAAGACCAGGAACACCATCAGCTCCAGCC 615345 25 100.0 38 NNNNNNNNNN ................TT....... CCGGACCAGCGGGACCAGGAGCTCCAGTAGGACCTACA 615408 25 100.0 29 NNNNNNNNNN ......................... CAAGACCAGGAACACCATCAGCTCCAGCT 615462 25 100.0 29 NNNNNNNNNN ...........G....TT....... CCGGACCAGGGGCTCCAGTTAGACCTATA 615516 25 100.0 20 NNNNNNNNNN .......................CA CAGGACCAGGAGCACCAGTT 615561 25 100.0 20 NNNNNNNNNN .......................TA CAGGACCAGGGGCACCACTT 615606 25 100.0 29 NNNNNNNNNN .......T......A.TG....... TAAGACCAGGAACACCATCAGCTCCAGCC 615660 25 100.0 1 NNNNNNNNNN ................TT....... NNNNNNNNNN ========== ====== ====== ====== ========== ========================= 44 25 38 GGACCTACAGGACCTACAGGACCAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [43-29] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [53.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [3312,4905] Score: 0/0.18 # # Final direction: F [0.64,0.41 Confidence: LOW] >NC_008343 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1522983 29 96.6 32 ACAGGCAAAT ....C........................ GGCGATACTCCTGAGAATAGCCAAATATCAGC 1523044 29 100.0 32 AAATATCAGC ............................. AGTTGCTCAAGGGAGCCCGGGTTTGGCGTTAT 1523105 29 100.0 32 TTGGCGTTAT ............................. GTCAGTGTGCATATTGTGCTCCCTCGTGATTC 1523166 29 100.0 32 CTCGTGATTC ............................. CCTGTGGTAACGCCGGTATCGAGGGCGATGAT 1523227 29 100.0 32 GGGCGATGAT ............................. GGCGCACGCAACACCAGTATCTCGCCCAGCGC 1523288 29 100.0 32 CGCCCAGCGC ............................. ACGCTGGGTTCAGCGTAGAGCGGCTCGAAATC 1523349 29 100.0 32 GCTCGAAATC ............................. TCAACCTCTCAGCATTTTCCCTATTTAAGTGA 1523410 29 100.0 32 ATTTAAGTGA ............................. CTGATCGCTGACACGTCGCATGATCGCATCGG 1523471 29 100.0 32 ATCGCATCGG ............................. AGCGCCGACTAAGGCAAATAAATGGCGGAAAT 1523532 29 100.0 32 TGGCGGAAAT ............................. ATTTGCCAAATAATTTCATGGACCGACCAGCC 1523593 29 100.0 32 CCGACCAGCC ............................. ATCGCAGTCGCTGTATCAGCAGTCACCGACTG 1523654 29 100.0 32 TCACCGACTG ............................. CTCCACGCATTCGTAAAATGTTCAGATGGGCG 1523715 29 100.0 32 CAGATGGGCG ............................. AAAAATGCTCGGTGGGAAGCGCCCTGTAGCGG 1523776 29 100.0 32 CCTGTAGCGG ............................. GAACGGTGGGATCACCAATAACGCCGGAGCGT 1523837 29 100.0 32 GCCGGAGCGT ............................. AACGCCGACCGATCATCCAGGACAGAAGATGC 1523898 29 100.0 32 CAGAAGATGC ............................. ACTCGCGACGCGCGCTTTTATCACGGCCGCAC 1523959 29 100.0 32 ACGGCCGCAC ............................. GATACAGGGCGCTGGCGCTGAGTGTGCTGGAC 1524020 29 100.0 32 TGTGCTGGAC ............................. GGCGCTCCCCTTTCTTTCTTAGATACAGAGGT 1524081 29 100.0 32 ATACAGAGGT ............................. GAGACTCTATTTTTTTTCCCATTAGTCAGCGA 1524142 29 100.0 32 TAGTCAGCGA ............................. TGCCAGCGCATGGCGCAGGAGCGCAACGCGGG 1524203 29 100.0 32 GCAACGCGGG ............................. TATTTTTGCGAAAATCCCGTCATGGGTTTTCG 1524264 29 100.0 32 TGGGTTTTCG ............................. TCCTGCTGCGACGAGGAAGAATTCGAATTTTT 1524325 29 100.0 32 TCGAATTTTT ............................. CTTGAGCCGATGAATGTAGATCGCATTTCTAC 1524386 29 100.0 32 GCATTTCTAC ............................. CGAGGCGGCCATCCGCTATCCAGGAGCAGCAT 1524447 29 100.0 32 GGAGCAGCAT ............................. CGTAGCATCGAACCCAGATCAGCAGGAGAGAG 1524508 29 96.6 581 CAGGAGAGAG A............................ CCTGAGCTGCTGCCAGCACCGATTGTGGCGGCCGGTTCATCCCCGCGCAGGCGGGGAACACACCGCGAAGCCGCGCGCATGTGCCTCGCTGGCCGGTTCATCCCCGCGCAGGCGGGGAACACCGTTTTCCTACCCGCATACGGCCTATTTCCACCGGTTCATCCCCGCGCAGGCGGGGAACACAATGCGCAGCTGCTCGATCTGGCGCGCGGTGGCGGTTCATCCCCGCGCAGGCGGGGAACACACCGTAACCGGTCTCACGACCTGCCTCGGCACCGGTTCATCCCCGCGCAGGCGGGGAACACTTTCAGAATACGGTTCCGGGTGGCTGCGCAGACGGTTCATCCCCGCGCAGGCGGGGAACACTCGAAGCCAAGAACGGCGGTTCATCGAGCGATCGGTTCATCCCCGCGCAGGCGGGGAACACCTGGACCGCGCTGCGATATATGATCAGCGGCGCGGTTCATCCCCGCGCAGGCGGGGAACACGACCACAACCGAGTGCTGATCAATCGCCTGCATGGTTCATCCCCGCGCAGGCGGGGAACACGGAAAAATATCAGCCATCCTGACATCAGCCGC 1525118 29 100.0 CATCAGCCGC ............................. TCTTCGCATAA ========== ====== ====== ====== ========== ============================= 27 29 53 CGGTTCATCCCCGCGCAGGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-13.50,-12.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2736,73] Score: 0.18/0.18 # # Final direction: F [0.92,0.68 Confidence: LOW] >NC_008343 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1534092 28 96.4 33 TCGATTAAAA .......T.................... GCAGCTATCCCACGCGCTTCATCAACAGATCCA 1534153 28 100.0 33 AACAGATCCA ............................ GCGGCCGAGACGATGGAAACCGGGCGCAACTCG 1534214 28 100.0 33 GCGCAACTCG ............................ TTGACGCGACAAATTTTGCTCGTGCAGCCGGGG 1534275 28 100.0 33 GCAGCCGGGG ............................ TTGCTATAGTTTATAGGGAGCGCGCGGGACGCT 1534336 28 100.0 33 GCGGGACGCT ............................ CCGCCGTGTCAGGCGTGTCACACGGACAGAGGA 1534397 28 100.0 33 GGACAGAGGA ............................ GCGGGCGCTGCGGTCACAAAAGCGACCGCGCTG 1534458 28 100.0 33 GACCGCGCTG ............................ CAGCGCGTCTCTCACGCCGCGCGGTGCATGGCA 1534519 28 100.0 33 GTGCATGGCA ............................ TGACTGAGGGCCGCGCAGGCCGAGACGTTTTAG 1534580 28 100.0 33 GACGTTTTAG ............................ TGTCAGAGGCGTAGACCCCGGCAGTATCCCGGG 1534641 28 100.0 GTATCCCGGG ............................ TCTAGGGCTG ========== ====== ====== ====== ========== ============================ 10 28 33 GGACTATCCCCGCGCACGCGGGGGAACC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [398,77] Score: 0.18/0.18 # # Final direction: R [0.55,0.68 Confidence: LOW] >NC_008343 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1524570 28 100.0 33 TGTGGCGGCC ............................ ACCGCGAAGCCGCGCGCATGTGCCTCGCTGGCC 1524631 28 100.0 33 CTCGCTGGCC ............................ CGTTTTCCTACCCGCATACGGCCTATTTCCACC 1524692 28 100.0 33 TATTTCCACC ............................ AATGCGCAGCTGCTCGATCTGGCGCGCGGTGGC 1524753 28 100.0 33 GCGCGGTGGC ............................ ACCGTAACCGGTCTCACGACCTGCCTCGGCACC 1524814 28 100.0 33 CCTCGGCACC ............................ TTTCAGAATACGGTTCCGGGTGGCTGCGCAGAC 1524875 28 100.0 33 CTGCGCAGAC ............................ TCGAAGCCAAGAACGGCGGTTCATCGAGCGATC 1524936 28 100.0 33 TCGAGCGATC ............................ CTGGACCGCGCTGCGATATATGATCAGCGGCGC 1524997 28 100.0 33 TCAGCGGCGC ............................ GACCACAACCGAGTGCTGATCAATCGCCTGCAT 1525058 28 100.0 33 TCGCCTGCAT ............................ GGAAAAATATCAGCCATCCTGACATCAGCCGCC 1525119 28 100.0 ATCAGCCGCC ............................ TCTTCGCATA ========== ====== ====== ====== ========== ============================ 10 28 33 GGTTCATCCCCGCGCAGGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-13.50,-12.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [30.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1489,73] Score: 0.18/0.18 # # Final direction: F [0.92,0.27 Confidence: MEDIUM] >NC_008340 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1073961 28 100.0 33 NNNNNNNNNN ..G.G...........G........... GTCACCACCCTCATCAACCAGTCCGGCTTCCGG 1074022 28 100.0 33 NNNNNNNNNN ............................ GAGGCCCTACCGGAGTGGGGCTTGGCTAATAGA 1074083 28 100.0 33 NNNNNNNNNN ............................ AAGGCTCAGGCGCCGACGCAGTCCACCGGCGAG 1074144 28 100.0 33 NNNNNNNNNN ............................ AACACGCTAGCCGCCCCGGGAAACTTGGCCCGG 1074205 28 100.0 33 NNNNNNNNNN ............................ AGCCGGCGCAGGTGCTCGCACCCGTACTGCAGA 1074266 28 100.0 33 NNNNNNNNNN ............................ TTAAGGTGGAGGTGAGTAATGATGGTGAAACTA 1074327 28 100.0 33 NNNNNNNNNN ............................ TGCTAGAACAGGAAATCAAGGCGCTGCGTGAGG 1074388 28 100.0 33 NNNNNNNNNN ............................ CGGGGACTACACCGGGGAAAAGCACTTGCAATG 1074449 28 100.0 33 NNNNNNNNNN ............................ TGGTATCCCGAGGAGCTAGCGACGGGTGATATC 1074510 28 100.0 33 NNNNNNNNNN ............................ CCGGGCGGGACCCTCGGGCACCGGCGCCCACCG 1074571 28 100.0 33 NNNNNNNNNN ............................ GCCGGGTTGTCCGGGTTGGGGTCTTGGGGTCAA 1074632 28 100.0 33 NNNNNNNNNN ............................ GATGCCGAAGAGTTCGAGGAAACGATTTACAAG 1074693 28 100.0 34 NNNNNNNNNN ............................ GCAGGAAACACACCTGATGCCGGCCCTCACTCGG 1074755 28 100.0 33 NNNNNNNNNN ............................ TGCAAGACTGGCGCAGGAGCGCGGAGAAACAGA 1074816 28 100.0 33 NNNNNNNNNN ............................ GGATCAAGTGGGCGCTGACTGCCGTGGGCCTGT 1074877 28 100.0 33 NNNNNNNNNN ............................ GAGTTGGCAAGTATCCATTATTGACCCCTTCAG 1074938 28 100.0 33 NNNNNNNNNN ............................ CAGTACCAGGTTTCCGGGTTCGACTCGGCCTCA 1074999 28 100.0 33 NNNNNNNNNN ............................ TCGGAGTCAATGTGGAGGGTCGGGTACTGCGGG 1075060 28 100.0 33 NNNNNNNNNN ............................ TCCGTCTTCTGGATATCAAGACCAGCCTCTCCA 1075121 28 100.0 33 NNNNNNNNNN ............................ TGGACCACCAGGCTGCTGGCCACTCGGTGCCGG 1075182 28 100.0 33 NNNNNNNNNN ............................ CCCGGCTGGTACGGATCGACCGCCTCAGCAAAG 1075243 28 100.0 33 NNNNNNNNNN ............................ TGTGACCATACCTCCACTTCCTCACCGCGGTGC 1075304 28 100.0 33 NNNNNNNNNN ............................ GTACCGTCATCCCCTACAACCAGCCACACACCG 1075365 28 100.0 33 NNNNNNNNNN ............................ ACCCGGGGCCGGATCATCGCCCAGGTGGAGAGG 1075426 28 100.0 33 NNNNNNNNNN ............................ ACGGCAGCACGGAGGAGCAGGAGATGGCCCGAG 1075487 28 100.0 33 NNNNNNNNNN ............................ ACCAAGCCTGAGACCGTACCTGGTGCCGCCTGG 1075548 28 100.0 33 NNNNNNNNNN ....................A....... GAAGTGGACGCCTTTCGAGATCATGCAGCTGCG 1075609 28 100.0 33 NNNNNNNNNN ............................ CAGAACCCTAATCTGGAGGTCCGGGCCGGGCGA 1075670 28 100.0 33 NNNNNNNNNN ............................ CAGGTGCTGCACGGCAAGGTGCGCGTTGCGGAG 1075731 28 100.0 33 NNNNNNNNNN ............................ GCAACGAATACCAGCGCGCCGAGATCAACGACA 1075792 28 100.0 33 NNNNNNNNNN ............................ GCGCTCGGGTGAGCGAGCGGGCTGCTGGGGTTG 1075853 28 100.0 33 NNNNNNNNNN ............................ CACCACGCGACCGGCACCGCCCCGGGCTTGTAG 1075914 28 100.0 33 NNNNNNNNNN ............................ GCCGAGGGTACAGCTTGACCGACCAGCCTCGCG 1075975 28 100.0 33 NNNNNNNNNN ............................ TTGGCGCGGGGTGGCCGAGCCGGGAGGTGAACG 1076036 28 100.0 33 NNNNNNNNNN ............................ ACCAGGTGGGCCAGGAACTCCTCGTCGAACTCG 1076097 28 100.0 33 NNNNNNNNNN ............................ CGAGGTCAGGAGGAAGTATGCCCCCCATCCCTG 1076158 28 100.0 33 NNNNNNNNNN ............................ TTCCAGACCGACACCATCAGCTGCCCGCGGTAG 1076219 28 100.0 33 NNNNNNNNNN ............................ AGCGGCCAGATCGATGCGATCCTCACCGACCAG 1076280 28 100.0 33 NNNNNNNNNN ............................ CAGAAAACAGCCCCGCCCACGCGGCGGGGCACA 1076341 28 100.0 33 NNNNNNNNNN ............................ ATACTCCTTCAGTCGGCTCTCTGCCTGCTTGCC 1076402 28 100.0 33 NNNNNNNNNN ............................ TGGGCCTTGAAGTAGCCCTCGTCGTCTGCGTGG 1076463 28 100.0 33 NNNNNNNNNN ............................ CAGGTGCTGCACGGCAAGGTGTCCGTCCGCGAG 1076524 28 100.0 33 NNNNNNNNNN ............................ GGTGGTCAGGCCCGGCAGCGGGATCTCGCCCAG 1076585 28 100.0 33 NNNNNNNNNN ............................ GCGGATAAACTCTTGCTTCGATGCCGCGTCAAG 1076646 28 100.0 33 NNNNNNNNNN ............................ GCCAACGTGCGCCGGTGGGAGTCCCCGGAGGAG 1076707 28 100.0 33 NNNNNNNNNN ............................ CGCGTCGGGCTGCTGACACGCCAGGCGCGGGAG 1076768 28 100.0 33 NNNNNNNNNN ............................ ACCCTTTAGATGATTGGTACGGCTTGAGCCCGG 1076829 28 100.0 33 NNNNNNNNNN ............................ AACAAACTCGTGCAGAGTGGATGATGGTCCAAA 1076890 28 100.0 33 NNNNNNNNNN ............................ AAGCGCATCATTCCGCCGGGGGGTACGCTGGAG 1076951 28 100.0 33 NNNNNNNNNN ............................ AGCAACACTAAGCCGTAACGCAACCCCTTGCCG 1077012 28 100.0 33 NNNNNNNNNN ............................ CCGTTATCGCCCATTTCCTGCGCGCTGGCGGTG 1077073 28 100.0 33 NNNNNNNNNN ............................ CTCGAGGCCGCCGCCGGTATTCTGCGCCTCGAC 1077134 28 100.0 33 NNNNNNNNNN ............................ AGAGAGCGTATTCCAGTACGTGGAGGTGTCCGA 1077195 28 100.0 33 NNNNNNNNNN ............................ CTCTTGGTGCGCCTCTTCCATCTCGCGCTCTAG 1077256 28 100.0 33 NNNNNNNNNN ............................ CGGCCGCATGTTGCGCTTGTTCGATCACGGTAA 1077317 28 100.0 33 NNNNNNNNNN ............................ TCGCGATTGGCGTTAATGCCAAATTGCTTAAGG 1077378 28 100.0 33 NNNNNNNNNN ............................ GATATCAGCGGCGCGCAGGAGATTCGCTGGACG 1077439 28 100.0 34 NNNNNNNNNN ............................ AAAGTCAGTTGCTTCAGTTGCTTTAGGGGTAAAG 1077501 28 100.0 33 NNNNNNNNNN ............................ CCGGAGGCAAACTGCTCAATCTGCCCCGGCAGG 1077562 28 100.0 33 NNNNNNNNNN ............................ AGGTAGACATTGGCCCATAGCTGGCTGGTCAGG 1077623 28 100.0 33 NNNNNNNNNN ............................ CTCCCTGGGCATCCCGCGTCAACTCCCTGCCGG 1077684 28 100.0 33 NNNNNNNNNN ............................ ACGTTGGGCTTGTGCTTCTTGCCCGGGGGCAGG 1077745 28 100.0 33 NNNNNNNNNN ............................ CCACTCGGCGCACCGTGCGCCTCGGTCTTTTCG 1077806 28 100.0 33 NNNNNNNNNN ............................ TGGGAGAAGGCCCACCCCGAGTTTCTAGCCACG 1077867 28 100.0 33 NNNNNNNNNN ............................ CCAGACCCGAGAAGTTGGACCGAGGAAGGTCGA 1077928 28 100.0 33 NNNNNNNNNN ............................ TTCAGTTCGTCTGCGCAATCCTCGATGGTGAAA 1077989 28 100.0 33 NNNNNNNNNN ............................ GGGCCTGCTCGGGCTGGCCGACGGCGATATTGA 1078050 28 100.0 33 NNNNNNNNNN ............................ GGAATATCGGCCACGAATGTTTTTCCATCACTG 1078111 28 100.0 33 NNNNNNNNNN ............................ ACTTCAAAGTCGTGCTTGAGCGGCGTTGCCACG 1078172 28 100.0 33 NNNNNNNNNN ............................ GCAGGCATGAGCGTGCATATCCACACGGACCTA 1078233 28 100.0 33 NNNNNNNNNN ............................ TTCGGGACGCGCCGCATGGCGGAACGCCCGTGG 1078294 28 100.0 33 NNNNNNNNNN ............................ TTCTGGAAAGGCATCGCAGCCGAACTGGAGTGG 1078355 28 100.0 33 NNNNNNNNNN ............................ GGAGCCGTCCGGGGTCTGCTCTTCGGACTGCAG 1078416 28 100.0 33 NNNNNNNNNN ............................ ACGCCACCATCCCGGCCCAGCTCACACCTTCCA 1078477 28 100.0 33 NNNNNNNNNN ............................ CGCTATCGGACGCGCCGGGCTCTACTCCGATAA 1078538 28 100.0 33 NNNNNNNNNN ............................ TTCGCCAGACTGCCCCACTCGGTGCTGATAAAA 1078599 28 100.0 33 NNNNNNNNNN ............................ TGACAGTGCCAGGCCCGCCCGCTCGCTGACCCA 1078660 28 100.0 33 NNNNNNNNNN ............................ TCGTCTTCGGTGCTATCCTGTGTGGCAGTCTGA 1078721 28 100.0 33 NNNNNNNNNN ............................ TTCTAGCCTCTCTTTGTGCCGGTTCTCTTCCAG 1078782 28 100.0 33 NNNNNNNNNN ............................ GCAAGAATGTGCCGGTGACCTCAATGGACTCAA 1078843 28 100.0 33 NNNNNNNNNN ............................ TTCGCTGAGGCGCTCCTGGTGCTGTGCCTCAAG 1078904 28 100.0 33 NNNNNNNNNN ............................ CTCGTGTTCGAGTTCGAGCGCGGGTTGTTCAAG 1078965 28 100.0 33 NNNNNNNNNN ............................ TCGTTCTGTAGCTGGATCAGCTCGCCTTCCAGG 1079026 28 100.0 33 NNNNNNNNNN ............................ ATTACCACGGCGGGTGGGAAGAAATACACTACA 1079087 28 100.0 33 NNNNNNNNNN ............................ GGCTTGCTCGGCAAAGAGCTGCAGCGGCAGCGA 1079148 28 100.0 33 NNNNNNNNNN ............................ CGGCAGCGAGCTGGCAGGGAATTGGGGCTGTGG 1079209 28 100.0 33 NNNNNNNNNN ............................ AGCCCTCGCCGCCGCCGGTGCCGGCATGGATCG 1079270 28 100.0 33 NNNNNNNNNN ............................ ACCAGCTTGAGGCCGCTCTGCCATTCCCAGACG 1079331 28 100.0 33 NNNNNNNNNN ............................ CGGTTCTGCACGCGCCGCACCGGGCCGGTGATG 1079392 28 100.0 33 NNNNNNNNNN ............................ GGCGCTACTGGCCATAGGCAGATCGAGATCTAC 1079453 28 100.0 33 NNNNNNNNNN ............................ TACCGAATCACCTCATCGGATATGGCAACCGCG 1079514 28 100.0 33 NNNNNNNNNN ............................ GTCGAGGTAGAGCTGCTGCGTCGACAACTCCGG 1079575 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 93 28 33 GGTCTATCCCCGCAGGCGCGGGGGAGCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [3,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [38.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [367,49] Score: 0.18/0.18 # # Final direction: R [0.18,0.68 Confidence: MEDIUM] >NC_008343 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1832546 28 100.0 33 NNNNNNNNNN ............................ CCGCTTTCCGGCGGTGCATTTCAACGGCACGGA 1832607 28 100.0 33 NNNNNNNNNN ............................ CACCCCTCCCCTTCCTCGCGGGCGCGCCTTAGG 1832668 28 100.0 33 NNNNNNNNNN ............................ TGGGACCGATATCGCCGTCCTGCATGACACCAA 1832729 28 100.0 33 NNNNNNNNNN ............................ GCCGACAGTGCGGCAACCCCTAGTGAGGGGGCA 1832790 28 100.0 33 NNNNNNNNNN ............................ TCATTCCTGATTGATGGCTCGCAGTCCTATACA 1832851 28 100.0 33 NNNNNNNNNN ............................ ATCTTGAGACAGACGAAACCTATCAGAGATTCG 1832912 28 100.0 33 NNNNNNNNNN ............................ GCCAGCGCGCGCGGATGGTGCCGACCGCGCGAG 1832973 28 100.0 33 NNNNNNNNNN ............................ AATGCGTGCCCAACCTCTCCCGGCGACCAGTCG 1833034 28 100.0 33 NNNNNNNNNN ............................ CCGCAAATCAGCGGCCCCGCTTTTCAGATATCG 1833095 28 100.0 33 NNNNNNNNNN ............................ TGCTGGCGCAGTCGATGGCGAACGGCACGGGGA 1833156 28 100.0 33 NNNNNNNNNN ............................ TGTAGCCGACCATCTTCATCTCTGCGAACAATG 1833217 28 100.0 33 NNNNNNNNNN ............................ CAGTTGATCGGCCCTGATCGGCTCCCAGTACAG 1833278 28 100.0 33 NNNNNNNNNN ............................ ATTTAGGCGAAAGTTATTCTTTTGATCCCGTGG 1833339 28 100.0 33 NNNNNNNNNN ............................ TCGTCCACCATTTTTGCATTCGGGACGACATTG 1833400 28 100.0 33 NNNNNNNNNN ............................ TCAGGCGCATCCGGCACCGTCTGCATGAGACCG 1833461 28 100.0 33 NNNNNNNNNN ............................ CGTAGATCACGACAAGGCGGGTCGGATCGATGA 1833522 28 100.0 33 NNNNNNNNNN ............................ TCCCGGGGTGGGAGTGGAGTGCGCAAGACGAAG 1833583 28 100.0 33 NNNNNNNNNN ............................ CCCGGGCTATTTTTGCTCGAAAAGCGTGGGTGG 1833644 28 100.0 33 NNNNNNNNNN ............................ GCTCTGTATCGCTGGTAGTCTCACGCGCTACGG 1833705 28 100.0 33 NNNNNNNNNN ............................ AGGATGGCGGGGTCGATCAGCAGGTCGTGCCGA 1833766 28 100.0 33 NNNNNNNNNN ............................ GGGCTGACCATGGATGCTAGCATAGCTGCCCAC 1833827 28 100.0 33 NNNNNNNNNN ............................ GGATGATGCACCCGGCCCATCCGGCGATATCGG 1833888 28 100.0 33 NNNNNNNNNN ............................ CATCTTCTCCTTGGGCTCCGCAGCCCGGATCGC 1833949 28 100.0 33 NNNNNNNNNN ............................ TACGATCTGTGCCGCGCCATGGTGACCGCGCAG 1834010 28 100.0 33 NNNNNNNNNN ............................ ACGAGTGGATTCAGGCTGGCGTTCACCACCGCG 1834071 28 100.0 33 NNNNNNNNNN ............................ TCTGTCGTCCGAACGCCAGGGCAGCTCGGCCCG 1834132 28 100.0 33 NNNNNNNNNN ............................ GCTCACCACTGCCTTGGCTGCCCGGTTTGCCAG 1834193 28 100.0 33 NNNNNNNNNN ............................ GATTAGGCCCCCGTCTATTTTATTCATCAATCA 1834254 28 100.0 33 NNNNNNNNNN ............................ GTTCGGCCAATTCCGCCGTGTTGGACGCACACA 1834315 28 100.0 33 NNNNNNNNNN ............................ TGGAACGGTGCGTACGTATCGGAGCTATCGTCG 1834376 28 100.0 33 NNNNNNNNNN ............................ GCGTTTCTGTCTGAGTGCCCGTTACGCCAGCAG 1834437 28 100.0 33 NNNNNNNNNN ............................ AGCAGAAAAAAAGCCAAGGGACGTGGGGCACAA 1834498 28 100.0 34 NNNNNNNNNN ............................ CGCTGCCTTGGGCGCTCGGAAACGGTCGGTCAAA 1834560 28 100.0 33 NNNNNNNNNN ............................ CTGTATTGGAGCGCAACGTCGCAATACAGGTCG 1834621 28 100.0 33 NNNNNNNNNN ............................ CCGATCGCACGATACTCGGCCGGACCGGCCGGA 1834682 28 100.0 33 NNNNNNNNNN ............................ CTGCATATGGAACGGGAAATCAACTATCATGAC 1834743 28 100.0 33 NNNNNNNNNN ............................ CACTCCTAAGTGCGCGGCAGGTCAGAAAGCTCG 1834804 28 100.0 33 NNNNNNNNNN ............................ CGGATGAAGCCCCTAATGCGGAGGTGACGGAGC 1834865 28 100.0 33 NNNNNNNNNN ............................ TTCCCGCAAAACTGCGCCATGTCTTTGCCGCTG 1834926 28 100.0 33 NNNNNNNNNN ............................ CGGCAGACAAATCGTGCGCGTCAGCTAGAAACG 1834987 28 100.0 33 NNNNNNNNNN ............................ CGGAAAAATACCTGACGGACGTAGAGGGTGTCG 1835048 28 100.0 33 NNNNNNNNNN ............................ CCCAACGGTCGTTGGTTCACTACGATCACAGGG 1835109 28 100.0 33 NNNNNNNNNN ............................ ACGTGGGGCACAATCGTCCAACGCCCGCTGGCG 1835170 28 100.0 33 NNNNNNNNNN ............................ GCATTCGGTGGGGGCAGCGCGAAACCAATCGAA 1835231 28 100.0 33 NNNNNNNNNN ............................ CGACGCAAATAAATAACGCCCTAGGAACGACGG 1835292 28 100.0 33 NNNNNNNNNN ............................ CATGTCACGCCGCAGCGCACGGATGCCCAGCGA 1835353 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 47 28 33 GGTCTATCTCCGCGCACGCGGAGGAACC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-10.50,-10.50] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [36.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [14,357] Score: 0.18/0.18 # # Final direction: R [0.37,0.45 Confidence: LOW] >NC_008343 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1917529 28 100.0 33 ATAGGTAAGA ............................ CTTTCCACCAGGCCGCCAGAGGGCGTTACCCCC 1917590 28 100.0 33 CGTTACCCCC ............................ CATTGCTCCGGCATCCTGTTCCGCGGTAATTGC 1917651 28 100.0 33 CGGTAATTGC ............................ TTGTCTGCTAATTTGGCGGATGAGTTTATTAAG 1917712 28 100.0 33 GTTTATTAAG ............................ CTGCGCATATCTATTAAATCCTGCTGCTGATTA 1917773 28 100.0 33 CTGCTGATTA ............................ CCCCGCCGGGTTTTCCGACAGCAGTCCACGGGA 1917834 28 100.0 33 GTCCACGGGA ............................ CTGTGAACGTTTTTAGATTTTCTGCCTCGGCCA 1917895 28 100.0 33 GCCTCGGCCA ............................ CGAGACCGTGCCGCGACGACACGCCACAATGCC 1917956 28 100.0 33 CCACAATGCC ............................ CGCGGCTGGCCGTCTCTATCGCCTGGTGGTCAA 1918017 28 100.0 33 TGGTGGTCAA ............................ GAGTTTCATCGGCTTCAGCGGCCCGCATTTCGC 1918078 28 100.0 33 CGCATTTCGC ............................ GTGGCTGCCACTTCGGCTGACCGCACATTGAGC 1918139 28 100.0 33 CACATTGAGC ............................ CCCCACACGTTCGCGCCCGCCACGCCGTAGACA 1918200 28 100.0 33 GCCGTAGACA ............................ TCGCTGCGCTCATAGTGAGCGACAGCGCCTGTT 1918261 28 100.0 33 AGCGCCTGTT ............................ CGTCCGAACAGACGCTGCGTCAAACGCCAGTGT 1918322 28 100.0 33 ACGCCAGTGT ............................ CTGGATATCCTCGGCCGAGATCGCATGCTCTTC 1918383 28 100.0 33 CATGCTCTTC ............................ ATTCCCGCTGTGGTGGACGCCGTTGTTTCTCTG 1918444 28 100.0 33 TGTTTCTCTG ............................ GATCGCCATTCAATGGCCGCCAGAAATAGGCCC 1918505 28 100.0 33 AAATAGGCCC ............................ CCATGCAGAATGATGCACCTATGGAGGCCCTCG 1918566 28 100.0 33 GAGGCCCTCG ............................ TTACCGCCCCTGTTCCAGTACTGTTCTGTATCG 1918627 28 100.0 33 TTCTGTATCG ............................ TTTATCAAAATCGGTGCGGAGCTTCGGAAGCGC 1918688 28 100.0 33 TCGGAAGCGC ............................ CCGGTTCCCCCGGATTTTTGCCATTTTTGCATG 1918749 28 100.0 33 TTTTTGCATG ............................ GCCAGAGAAAAATCTCTGTCTTTAAAAAGAGCA 1918810 28 100.0 33 AAAAAGAGCA ............................ TGGTCTTCAGCTGGCTGGGGCAGTGCTACGATC 1918871 28 100.0 33 TGCTACGATC ............................ TTTTTCAATCGCGCCCGACCTGCCCCTGTAAAG 1918932 28 100.0 33 CCCTGTAAAG ............................ CTGCGTCTGCTCACTCTGCGCGTTCTGGCCCAA 1918993 28 100.0 33 TCTGGCCCAA ............................ CACCACGCGCGTTTTGCCGCCCTTGCCGAACAC 1919054 28 100.0 33 TGCCGAACAC ............................ CGACCCGAATATAGTTCTCACTCAGTTACATCA 1919115 28 100.0 33 AGTTACATCA ............................ CTGATCGCTGGAAAGTCAGCGCCGCACCGTCGA 1919176 28 92.9 GCACCGTCGA ..........................TT CTCGGCAA ========== ====== ====== ====== ========== ============================ 28 28 33 GGTTCCTCCGCGTGCGCGGAGATAGACC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-10.50,-10.50] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [76.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [61,330] Score: 0.18/0.18 # # Final direction: F [0.68,0.55 Confidence: LOW] >NC_008344 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2341828 36 94.4 35 ACCAACTCGA --.................................. TATGGAAGATGATATGGGTGAGGAAATCACCTTAG 2341899 36 100.0 34 ATCACCTTAG .................................... AATGGAAAGGTGTTTGCTCGTCGAAGTCTATCCG 2341969 36 100.0 35 AGTCTATCCG .................................... GAAATAACCGGATCGACCCCATACAGGCCAGCGAC 2342040 36 100.0 34 GGCCAGCGAC .................................... AATGGAAAGGTGTTTGCTCGTCGAAGTCTATCCG 2342110 36 100.0 35 AGTCTATCCG .................................... GTCTCATCCAAATGCATTAGTGTTTGGATGTGAAC 2342181 36 100.0 35 GGATGTGAAC .................................... AATATCTCTAATGTTGAACACTTCTTTTTTCTTGT 2342252 36 100.0 32 TTTTTCTTGT .................................... GAATATGAGCGCCGGCATCAGAATGGTATTGG 2342320 36 100.0 35 ATGGTATTGG .................................... TAAATATGAATGTTTGAATGACGCATTTGTAGGTG 2342391 36 100.0 35 TTTGTAGGTG .................................... GATGCGATAAATAACAAAGTAAAGAAACTAGGACT 2342462 36 100.0 36 AACTAGGACT .................................... TACGAGATAGGTGAAAAGTACGTCAAATCTCGTGAC 2342534 36 100.0 34 ATCTCGTGAC .................................... GCTGCTGCTGTTCTCATATTAGCCCTACATTTAG 2342604 36 100.0 CTACATTTAG .................................... TGATTGCTGTC ========== ====== ====== ====== ========== ==================================== 12 36 34 GTCTCAATCCCTTTGAAATCAGGGCATGGGTGTTTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.70,-6.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [143,423] Score: 0.18/0.18 # # Final direction: R [0,1.23 Confidence: HIGH] >NC_008463 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2935917 28 100.0 32 TGGGTTCGAG ............................ TGGATTCATGTATCAGGCATCGTACTCGGCAA 2935977 28 100.0 32 TACTCGGCAA ............................ CAGGTAGACGCGGACATCAAGCCCGCCGTGAA 2936037 28 100.0 32 CCGCCGTGAA ............................ GAGAGCCGCAGGGAGCGGGGCCGCAAACTCCT 2936097 28 100.0 32 GCAAACTCCT ............................ TGGAGGCGACCGAACCCGGGCTGTTCGAGGAT 2936157 28 100.0 32 GTTCGAGGAT ............................ AACCGCGCGCAACAGCTGTGCATCGTCACCTT 2936217 28 100.0 32 TCGTCACCTT ............................ CGTCTCGATGCTGCCGTCGATGAGCGTCTTGT 2936277 28 100.0 32 AGCGTCTTGT ............................ TTATCAAGCGGCTGTGCTGGGCCTGTTTCGTT 2936337 28 100.0 32 CTGTTTCGTT ............................ GCCTTCGGTGGTGATCTTTCCGTTGTTTGCCT 2936397 28 100.0 32 TTGTTTGCCT ............................ AATCGTGCTCGAGATACCAGCCATCCGCGCAC 2936457 28 100.0 32 ATCCGCGCAC ............................ AACAGAACCGCGCACCTCGATCAGCCTCGCAT 2936517 28 100.0 32 AGCCTCGCAT ............................ GTAAATCCAGCGCCTGGGCTGCGCATTGTCCA 2936577 28 100.0 32 GCATTGTCCA ............................ CACGCAGCCAGGCTCGAACATCGGCCCGGCTT 2936637 28 100.0 32 GGCCCGGCTT ............................ TACTACGACGACGCTTTGCAGGCTGATATTCA 2936697 28 100.0 32 CTGATATTCA ............................ ACGACGCGACCAGAATCGCGATTTGCACCCAC 2936757 28 100.0 32 TTGCACCCAC ............................ GCGCTGACGCCGCATTCGGCGATCTGCTTCGT 2936817 28 100.0 32 TCTGCTTCGT ............................ CGGGCGCTTGCGCCGGATCGGCGAATTGGATG 2936877 28 100.0 32 GAATTGGATG ............................ CCGGGCTGGATGGACTCGAAGGGCGCCAGGCT 2936937 28 100.0 32 GCGCCAGGCT ............................ GACCAGATCCTGCCGCAGTACTGGCAGGACCG 2936997 28 100.0 32 GGCAGGACCG ............................ GTCGCAGCCACTGTGTCGGCCAAAACCAGGTC 2937057 28 100.0 33 AAACCAGGTC ............................ TTGACGAACGCCGTCCAGAAGTCACCACCCGGC 2937118 28 100.0 32 ACCACCCGGC ............................ ACCGCGCTCGACTACTACAACGTCCGGCTGAT 2937178 28 100.0 TCCGGCTGAT ............................ TAGCTCCGAA ========== ====== ====== ====== ========== ============================ 22 28 32 TTTCTTAGCTGCCTACACGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,8] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [31.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [262,272] Score: 0/0.18 # # Final direction: R [0,1.51 Confidence: HIGH] >NC_008463 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2926520 28 100.0 32 TTTTGGTCTA ............................ ACCACCCGCTACCACCGGCAGCCGCACCGGCC 2926580 28 100.0 32 CGCACCGGCC ............................ ATCACCGGCGCGCTGGCCTTCGGCGCCCAGGC 2926640 28 100.0 32 GCGCCCAGGC ............................ TTATCAGTAAATACGTGGCGACTTGGCCACCC 2926700 28 100.0 32 TTGGCCACCC ............................ TTGCTGCGTGTTGCAGCGACACCCGTTCAACA 2926760 28 100.0 32 CCGTTCAACA ............................ ACTGGAGATACGTGCACAGATCGGACGACACG 2926820 28 100.0 32 GGACGACACG ............................ ATATCAGTTTGCATGGTTTGCTCCTACCAAGC 2926880 28 100.0 32 CCTACCAAGC ............................ TTGCATCGCACCCTCCTGCTCACCGACCAGGC 2926940 28 100.0 32 CCGACCAGGC ............................ TGAACGTTCACGCATCACGCGCCTTTCCGGCC 2927000 28 100.0 32 CTTTCCGGCC ............................ AGGCAGACGAGTACGCGCGGTCTCGCGAAGTG 2927060 28 100.0 32 TCGCGAAGTG ............................ AGAACATGGCCCGGCTCCCGACGTTGCTGCGG 2927120 28 100.0 32 GTTGCTGCGG ............................ ATGACGCAAGACGAGCTTGTCCGCCTTCTGGC 2927180 28 100.0 GCCTTCTGGC ............................ GTTTGCAGGAA ========== ====== ====== ====== ========== ============================ 12 28 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.57%AT] # Reference repeat match suggestion: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [153,311] Score: 0.18/0.18 # # Final direction: F [0.87,0.18 Confidence: MEDIUM] >NC_008344 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2357406 36 100.0 34 ACAGTAGTCA .................................... AACTAAGAACATTGACACCAGCATCTGACAGGTC 2357476 36 100.0 35 CTGACAGGTC .................................... CGTATGATGAGTAACCTTCTCCGCCTTCATTTACC 2357547 36 100.0 33 TTCATTTACC .................................... CTTCACCTGATTGGGGATTGGCGTACGCGTATG 2357616 36 100.0 35 TACGCGTATG .................................... CGTGAGGAAATCTTCCAATTCTTCTTGGTTGCAGG 2357687 36 100.0 34 TGGTTGCAGG .................................... TGATCTCGTGAGCGTGCTTGACGGTGGCGGCAAA 2357757 36 100.0 34 TGGCGGCAAA .................................... GTTTGGATCTTCCGCTTGCGCCCATTTGTACACG 2357827 36 100.0 33 TTTGTACACG .................................... GCTGGCCATCCTTGATTTTAAACTTTCCAAACA 2357896 36 100.0 36 TTTCCAAACA .................................... CGCTGTCTTAAACAGCGTATTAATATAACTACTATA 2357968 36 100.0 34 AACTACTATA .................................... GAACGTTTGTATCATTTGGTATTGGGTCGAGTGA 2358038 36 100.0 33 GGTCGAGTGA .................................... TTGTTTTGAGCCGGGTATATCGTGTACATAATT 2358107 36 97.2 GTACATAATT ...................................T TGGCATACA ========== ====== ====== ====== ========== ==================================== 11 36 34 GAAACACCCATGCCCTGATTTCAAAGGGATTGAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.10,-4.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [251,370] Score: 0/0.18 # # Final direction: F [1.05,0 Confidence: HIGH] >NC_008346 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1999255 36 100.0 37 ATAAACTTGA .................................... CCGCTAATGAAACAATTCAATAGCCCAGCAATCGTTG 1999328 36 100.0 39 GCAATCGTTG .................................... CAATGCCTTGAAAGAAGCATATGCCGTATGCAACATAGT 1999403 36 100.0 38 GCAACATAGT .................................... GTTGAAAGGTTTAAAGCTCTGAAGGCAGAATCCAGAGG 1999477 36 97.2 37 AATCCAGAGG .......C............................ ACCAGATAGTACAGCAGATAGTCAATCACTGCCGCTG 1999550 36 100.0 39 ACTGCCGCTG .................................... GTATTACAAGGAATTCGAATGTACTACAAAGAATTGCGC 1999625 36 100.0 38 AGAATTGCGC .................................... GTAGTTTGTCTTTGGATCATCCACTCCAGCGGAATGCA 1999699 36 100.0 37 GCGGAATGCA .................................... TCCATGTACCTGATAACATATTTGACCTTCATATCTT 1999772 36 100.0 34 TTCATATCTT .................................... GGAACTTTGTCCTTGAATCATCCCCTCCAGCGGA 1999842 36 100.0 35 CTCCAGCGGA .................................... CCAGAAGGGCGAGAGGGAAACGAAGGAGAAAGGGA 1999913 36 100.0 38 GAGAAAGGGA .................................... GTAGAATAACCAGTTTCGAAAAAACCCAAGAGGCGTTA 1999987 36 100.0 35 AGAGGCGTTA .................................... CCTACTCATTGTCCTGATTGTGGAAGTAAATTAAG 2000058 36 100.0 38 GTAAATTAAG .................................... TTAATAACTTGTATAGCAGATGACCTCCTGTTATAAAT 2000132 36 100.0 36 TGTTATAAAT .................................... GTTTTTGTAAAAATAGTCATAGATAAAGCTAATAAA 2000204 36 100.0 37 AGCTAATAAA .................................... GATTACCATGTCGACGATAGCTATAAAAAACTATATG 2000277 36 100.0 35 AAACTATATG .................................... TTCATCAAATATTATCTAATAAAGAATTAATAAAG 2000348 36 100.0 ATTAATAAAG .................................... TTAATAAGGA ========== ====== ====== ====== ========== ==================================== 16 36 36 GTTTCCGTCCCCTTAAAGGGGTCCTTCGTTTTTAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.30,-7.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [29,128] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_008346 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2002263 36 100.0 34 ATTGGTTAAA .................................... CCAAATGAACGACCCTATTAATGTGGCGTTGCAG 2002333 36 100.0 40 GGCGTTGCAG .................................... GGGCAGATAGTCAACCACTACGGTTACAGCAGAGTATACC 2002409 36 100.0 34 AGAGTATACC .................................... TCAGGGTGTTTGATGATGAACTGCAGCAAAAGAT 2002479 36 100.0 AGCAAAAGAT .................................... CCTGTCGTGGC ========== ====== ====== ====== ========== ==================================== 4 36 36 GTTTCCGTCCCCTTAAAGGGGTCCTTCGTTTTTAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.30,-7.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [66.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [477,199] Score: 0.18/0.18 # # Final direction: F [0.45,0.37 Confidence: LOW] >NC_008346 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 564991 32 100.0 36 CGGGGGTGGT ................................ TATTAAAGCGACCGGAAATTTGTAAACCGGGGGTGG 565059 32 100.0 36 CCGGGGGTGG ................................ CGGCAAAAAAATTGCATGGTACTACCATGCAGGGCA 565127 32 100.0 38 ATGCAGGGCA ................................ GATATATTGATGGTAAAATTTGTAAACTATGCCCCGTC 565197 32 100.0 38 ATGCCCCGTC ................................ CACCCAGACCATGGTGGAACCAATGAACAAATGACCAT 565267 32 100.0 AAATGACCAT ................................ TATAATAATAG ========== ====== ====== ====== ========== ================================ 5 32 37 GTCGCACCCCATGCGGGTGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [6,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.50,-5.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [438,3753] Score: 0.18/0.18 # # Final direction: F [4.87,0.45 Confidence: HIGH] >NC_008346 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2056513 30 100.0 36 CGACAAGCAT .............................. GTATGTGACTCGCGGAATAGACAACCCCAGGGCTTT 2056579 30 100.0 37 CCAGGGCTTT .............................. AATAAGTATAGTTTGTCCGCCGCTCTTGGACGGACTA 2056646 30 100.0 36 GGACGGACTA .............................. CTTGACTTGCTTTTCACTGCCAACCAGTTCCGGCAG 2056712 30 100.0 36 GTTCCGGCAG .............................. TGCAACCTTCCCTGAGCATTTCTGTATCTTCTTCAT 2056778 30 100.0 38 TCTTCTTCAT .............................. GCCGGGTAGCTGATTAAATCTTGCTAATGGTTTGCTAA 2056846 30 100.0 36 GGTTTGCTAA .............................. AGAATCCGAAAACAGCGAGAGGAGGGAATCAATAGA 2056912 30 100.0 35 AATCAATAGA .............................. GAATATGTTAATAACCAACTGGACATATTCTACAA 2056977 30 100.0 36 TATTCTACAA .............................. CATACAGGTCAACGAACATTCCTTCGGCAAGGTACA 2057043 30 100.0 35 GCAAGGTACA .............................. GGCTGAGTAATAAAGTGTCTGGCCAGGAAATCTTG 2057108 30 100.0 36 GGAAATCTTG .............................. GGCCGAATTGCTGGCAAATAGAGCAGGCAGTAAGGT 2057174 30 100.0 37 GCAGTAAGGT .............................. CTGTTACATCGTCCTCAGTTCTTTTTCGGTAGCATCA 2057241 30 100.0 36 GGTAGCATCA .............................. TAAGATTAAAAAAAGGGATGGAGAAATTGTAGATTT 2057307 30 100.0 36 TTGTAGATTT .............................. GTCCATGATCTCCGCAACTGCAATGGCTTTGGCGGT 2057373 30 100.0 36 CTTTGGCGGT .............................. TTTTGCCCTCAGCGTAAAGGTCCGCTTCTTTGGCAT 2057439 30 100.0 37 TCTTTGGCAT .............................. CGGACGGCAATATTAAAACAGCCCTGCAAGGCATTCG 2057506 30 100.0 35 AAGGCATTCG .............................. TTATACCCGCCTCCAGATAAACAAAGAGTAGATAC 2057571 30 100.0 35 GAGTAGATAC .............................. ACAGAACACACGGCGGAAAAAAGAGTTTTCAAAAG 2057636 30 100.0 35 TTTTCAAAAG .............................. ATAACAGGCGATTACTGGGAGGGAATAAGAAAGTT 2057701 30 100.0 35 TAAGAAAGTT .............................. CCAGGCTTGAAAGGGGTGTGAATAATGCTGAACAA 2057766 30 100.0 35 TGCTGAACAA .............................. AATAGTATTTTTGAAGGGAAAGCCCTGATTGATGT 2057831 30 100.0 37 TGATTGATGT .............................. GGCGTTAAAAGCATTTTCGGCGGGGTTTGGGAAGCAA 2057898 30 100.0 36 TGGGAAGCAA .............................. TATTAAGAAATCCCGGGCCGCATTCTTGATTTTGCA 2057964 30 100.0 37 TGATTTTGCA .............................. AGTGGCGGGAAATAGTAGAAAAGTTCTTGATTGCCAA 2058031 30 100.0 37 TGATTGCCAA .............................. GGGAGTGAATAGCCCCTGCAAAACAAAATAATCGCAT 2058098 30 100.0 36 ATAATCGCAT .............................. TGGTGTTGTGTTCGGATATTTCGGCTTGATTACCCG 2058164 30 100.0 36 TGATTACCCG .............................. GCAAGGTGAGATATTGGGCTTACGTTGGCAAGACGT 2058230 30 100.0 GGCAAGACGT .............................. CAGGATAAAA ========== ====== ====== ====== ========== ============================== 27 30 36 ATTTCAATACATCAAATGTGCCGGTTCCGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [169,181] Score: 0/0.18 # # Final direction: R [0,4.77 Confidence: HIGH] >NC_008346 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2856131 30 100.0 35 NNNNNNNNNN .............................. GCGGCATAATTTTGCTACCGTCCTGCTTGATCTGG 2856196 30 100.0 36 NNNNNNNNNN .............................. CTTTGAGGCTGAGCTTCCCACTGCTGAGCAAACCGG 2856262 30 100.0 36 NNNNNNNNNN .............................. GAGTATAAGCTTCCAGCGGTGAGCATCGTCAATTAC 2856328 30 100.0 37 NNNNNNNNNN .............................. TATGTTGAGGTTGGCAAAGAGTACCTTGCGGAATTTA 2856395 30 100.0 35 NNNNNNNNNN .............................. CCCAAAAGGCTATCGGTGTTGATTGAAGCTTTGGC 2856460 30 100.0 36 NNNNNNNNNN .............................. GTGATTAACTAATGCCAGAACAGACAAGACAAGCAA 2856526 30 100.0 36 NNNNNNNNNN .............................. CCATAGTAATTAGCGGCACCCCTAGCCACGATGCAG 2856592 30 100.0 38 NNNNNNNNNN .............................. GCCAAATGGGTGAACGGCTGGGGATATCACATAGAGCT 2856660 30 100.0 37 NNNNNNNNNN .............................. GGGTTTCCTTGTATCCACCACAACGTTGTTTTTTGTA 2856727 30 100.0 35 NNNNNNNNNN .............................. GATACCCGTAAACCCGTAAACATACGGATTTATCG 2856792 30 100.0 37 NNNNNNNNNN .............................. AAAGTTTTAATGCTTATCTTAACTGCATCAAATCCAA 2856859 30 100.0 36 NNNNNNNNNN .............................. GGAAGGAAGCCCAAGCCAAAACAACAGTCTAGCCAG 2856925 30 100.0 36 NNNNNNNNNN .............................. TACAACACTATTTTTATGGTATCTTCCCCATCTATC 2856991 30 100.0 35 NNNNNNNNNN .............................. GCAAACTGTGCGATTGCTTGTTCCTCTTTTTCGCC 2857056 30 100.0 37 NNNNNNNNNN .............................. AAATGTTAGTTAAAACTATAACAGACGAAACAAATGG 2857123 30 100.0 36 NNNNNNNNNN .............................. TACCGCCCCTAGTTTACAATTTCCAACCCGTTTATA 2857189 30 100.0 38 NNNNNNNNNN .............................. TGGATAAAGGGCCTTGTCAGTATTGGAGGGGAGATGAC 2857257 30 100.0 36 NNNNNNNNNN .............................. GAGGGGTAAGCGTGACACTAGAACAAGCACTAGAGA 2857323 30 100.0 36 NNNNNNNNNN .............................. AAAGGAGGGGTGGAAAATCCTAAGCATCAGAGAGAT 2857389 30 100.0 35 NNNNNNNNNN .............................. ACCGGGTTTCCCCGGTTTCGCTGTCTACAGCTCGT 2857454 30 100.0 36 NNNNNNNNNN .............................. CCACCTAATCACCATTTCTACACTCAAATTCCTTTA 2857520 30 100.0 36 NNNNNNNNNN .............................. TCTAGTATGAGAAGAAATATGAATAATTGTAGTTTT 2857586 30 100.0 35 NNNNNNNNNN .............................. ATATAGGCAATAGCAAGCATTAAAACAATACGATA 2857651 30 100.0 36 NNNNNNNNNN .............................. CAAGTAATAAAGAGATTATTAATTTCATGGAAAAAA 2857717 30 100.0 36 NNNNNNNNNN .............................. GTTTTTTGAGTATTTTGAGATTGAACCCCAGGTTAT 2857783 30 100.0 36 NNNNNNNNNN .............................. TCAATATAAGTATATACTATCGTTTGATATATCATA 2857849 30 100.0 35 NNNNNNNNNN .............................. TGTAATCTTATTACTATAATTATTAAATATTCTTT 2857914 30 100.0 37 NNNNNNNNNN .............................. CCGATACCTCCCGGGGAGACCGGGCCACCGTGCTCGG 2857981 30 100.0 37 NNNNNNNNNN .............................. CCTTTTGATGGATACCGGGAAATTATAACCGCACTAA 2858048 30 100.0 35 NNNNNNNNNN .............................. TATGCGGCTATCGTCACCACTCCTGCCGGATACCT 2858113 30 100.0 36 NNNNNNNNNN .............................. TGTCGAATATATTATGTAATAATATATTACATAGTA 2858179 30 100.0 35 NNNNNNNNNN .............................. TGTGACTGGTGCGGCAATTGGATTTGCAATGATTG 2858244 30 100.0 36 NNNNNNNNNN .............................. CACCTGCGATGATTGTGGGTGCTACATTGATTCGGA 2858310 30 100.0 36 NNNNNNNNNN .............................. AGCACGGTTCAGCGTGCAATGGAAATTGCTTACGAA 2858376 30 100.0 34 NNNNNNNNNN .............................. TAAAATAAAAAAATAAATTTTATAAAAAAGAAGG 2858440 30 100.0 37 NNNNNNNNNN .............................. CGGTCAGACAAGCCCCCGAAGTCCCAAAAAATTCTGG 2858507 30 100.0 36 NNNNNNNNNN .............................. GACACAAAAAGGTGTCGAGGCGAAAGGAGTCGATGG 2858573 30 100.0 36 NNNNNNNNNN .............................. AAGAATTTTAGGGGGGGATAGAGATGAAAGAAAAGG 2858639 30 100.0 37 NNNNNNNNNN .............................. CCCTATCGGCGGCCCTTCGGCGGCCCCCCTCTTGGAC 2858706 30 100.0 37 NNNNNNNNNN .............................. CCTCAGTCACCGGGGGGCGCAGGAAAGCGGTATCCCG 2858773 30 100.0 36 NNNNNNNNNN .............................. TTTTTACATCGCCATAAATAATGGTGGTGTAGCCCA 2858839 30 100.0 34 NNNNNNNNNN .............................. ACAGGAGAAGGAGAATGTTTGCCCTATTGACTAT 2858903 30 100.0 36 NNNNNNNNNN .............................. TCCCATACATCCCCATTTTTTGACATCCTTCGACAA 2858969 30 100.0 35 NNNNNNNNNN .............................. TGAATAATTGCAATGGCAATTGTTCAGAATGTTTT 2859034 30 100.0 35 NNNNNNNNNN .............................. CTTGGGACGATACTCCAAAGTTTGCTCCTAATCCA 2859099 30 100.0 36 NNNNNNNNNN .............................. ATGGCGGGATTTTAAGGCCTTCGCAGGTTGGACGAA 2859165 30 100.0 35 NNNNNNNNNN .............................. CCCATTGTATCCCCGTGTTATCACTTTTACCCTGT 2859230 30 100.0 37 NNNNNNNNNN .............................. AATCTAATTTTCATGCTACCACCTCCCTTAGATGAGA 2859297 30 100.0 37 NNNNNNNNNN .............................. GAAAATAAAGATGGTCAAACCATACATTTTGATTCAT 2859364 30 100.0 35 NNNNNNNNNN .............................. AAAGAAGAAGATAAAAATACTATTAAATTAAGTGA 2859429 30 100.0 37 NNNNNNNNNN .............................. GTTGTTAGCCTGTTTTTCATCCATATGGGATTTAACA 2859496 30 100.0 38 NNNNNNNNNN .............................. TTTGATGATAGCGGTTTATACTTACTGGTGTGCCTAGA 2859564 30 100.0 37 NNNNNNNNNN .............................. TGAGGTTGCAAGAGGGTATCCGCATGGGTTTTGATGA 2859631 30 100.0 35 NNNNNNNNNN .............................. ATAAAAACCTACAGTCCTATAGACTTGATAAAAAC 2859696 30 100.0 36 NNNNNNNNNN .............................. TATCATTATTTAAACAGCAACGCAAGTTTTTTCCAA 2859762 30 100.0 38 NNNNNNNNNN .............................. TGAAATGATGGTCCAGCGGGCCATAGTAACGTACAGAA 2859830 30 100.0 37 NNNNNNNNNN .............................. ATCACTAAATTCGGGTAGCTTCATACCCTTGGGGATA 2859897 30 100.0 36 NNNNNNNNNN .............................. TGTGGGGTATAGCCCCTCATACCCGGTATCTACCAT 2859963 30 100.0 35 NNNNNNNNNN .............................. CAAAACCTGGGCTTCGGTTTCATCGAACCAGCATT 2860028 30 100.0 37 NNNNNNNNNN .............................. ATAGATGAAGAAGGAATGAAAGAAGTATACAAATGGT 2860095 30 100.0 37 NNNNNNNNNN .............................. TGGATATGGGCACCGGAAGGTGCAGGACTGGCATTGA 2860162 30 100.0 37 NNNNNNNNNN .............................. AAAAATTAGAGAAAGGGGTAAAGCTTAATGCCTTTAT 2860229 30 100.0 36 NNNNNNNNNN .............................. CTTAATTGTGAGTTTCCAGCCCCACACTTAAGGAAA 2860295 30 100.0 35 NNNNNNNNNN .............................. CTTAAACAGATTACAGGGCTCAAAGAGGCATTCGC 2860360 30 100.0 37 NNNNNNNNNN .............................. GAAATGCCTGAAATGTGGGCATGAGTACAAGATAGAT 2860427 30 100.0 35 NNNNNNNNNN .............................. GCCACGACAGAGCCAGCTACCACTTGCCTTTTTGG 2860492 30 100.0 36 NNNNNNNNNN .............................. TAGGGATGATTTTTCTAAATTCTTCCCGATTGACTT 2860558 30 100.0 36 NNNNNNNNNN .............................. GCGCGTGTGCTCCGCGCTTTGCCTCTGCCGCTCCTT 2860624 30 100.0 35 NNNNNNNNNN .............................. ACCTCAGTTCAATCTAATCAGCCTTGCCTGTACAT 2860689 30 100.0 35 NNNNNNNNNN .............................. CTTGACCGTTACGAAGTGATAAAAAGCCTACAGAA 2860754 30 100.0 37 NNNNNNNNNN .............................. GGATCTCAATCAACCGCCAAGGCAGCAAGGATGTTGG 2860821 30 100.0 35 NNNNNNNNNN .............................. GCTTATACCTCTCTTCGTTGTGAAGCGAATTGCCA 2860886 30 100.0 36 NNNNNNNNNN .............................. CACTGCCGCATAAGTCCCACGGTTCAGATATGACAG 2860952 30 100.0 35 NNNNNNNNNN .............................. AGTAATTATCGAAACTCTTAATATAAACAACAATG 2861017 30 100.0 36 NNNNNNNNNN .............................. AGGGAGAACATACCGGATTGAGACGGCAGGAGACAG 2861083 30 100.0 36 NNNNNNNNNN .............................. ATTGCGGGAATCGCTGGATTGAAACCTTGGAAATCT 2861149 30 100.0 36 NNNNNNNNNN .............................. TTTGCCACTGAATTTCTTGAGCGGGTGGTGGAAAAG 2861215 30 100.0 37 NNNNNNNNNN .............................. GGAAAAACTGGTTTGAACTACCACTAGGCTAAAGCCA 2861282 30 100.0 36 NNNNNNNNNN .............................. CCGATTCTTGGATGATGCCTGCCACGGTTATACCGT 2861348 30 100.0 35 NNNNNNNNNN .............................. GCCCGATACTTACGGTTTACGGGTATGCAGTTTTT 2861413 30 100.0 34 NNNNNNNNNN .............................. TTGATGATGAACCGATATGGATTACGTTGAATCC 2861477 30 100.0 36 NNNNNNNNNN .............................. TTAAATTCCTGCTTATAAGGGCCCTTGCAGGTACGC 2861543 30 100.0 37 NNNNNNNNNN .............................. CAGCGCCCACCAGCAGGGCCTGGTGTCGGACACCAGG 2861610 30 100.0 36 NNNNNNNNNN .............................. TACAGCACTTTGACCCCGCTAAATTCATTGGAGTAG 2861676 30 100.0 37 NNNNNNNNNN .............................. TCGAGGATCTGAGGTCCTCGAAAATTGTGTACTTTTT 2861743 30 100.0 35 NNNNNNNNNN .............................. CCTGTTCCCTTGAGTGCGAGGCTGAGGACCTCGCT 2861808 30 100.0 36 NNNNNNNNNN .............................. GGATGCGAGGCCGCTAGGCCTCTAAACGATTTCTTT 2861874 30 100.0 36 NNNNNNNNNN .............................. CTTACCTTGATGGTGCAGACCGGGAACATTTTTGCA 2861940 30 100.0 36 NNNNNNNNNN .............................. TCACTGCCCCGGTTCCAGCCCGGAGCAGGGTAAGAG 2862006 30 100.0 37 NNNNNNNNNN .............................. AAATCGATTGAAACAAGATACCCGGATGACAGGAGGA 2862073 30 100.0 36 NNNNNNNNNN .............................. CCGGGCTAGACCCGGAAAGGAGGAATTTAAAATGAG 2862139 30 100.0 38 NNNNNNNNNN .............................. GAGTTTCGTTTTATCATGTTTCCCGATGTTCCGGGAGA 2862207 30 100.0 36 NNNNNNNNNN .............................. ATTGGCCATGTTTATCACTCCTTTGCAAGTTTAGTA 2862273 30 100.0 36 NNNNNNNNNN .............................. CTGTGCCTATTTACTATCCTTTTTCTACATTTTCGA 2862339 30 100.0 35 NNNNNNNNNN .............................. GCAAGTTTAGTATAGCAGGAGATATATACTTCATG 2862404 30 100.0 37 NNNNNNNNNN .............................. CGATACCTCCCGGGGAGACCGGGCCACCGTGCTCGGG 2862471 30 100.0 36 NNNNNNNNNN .............................. CAGAGCGGTAACTCCCGCAACCCGACCCAGTTCTTT 2862537 30 100.0 36 NNNNNNNNNN .............................. TACCACTTACCTTTTTGGTTTAGCCGACAGGGAGAA 2862603 30 100.0 36 NNNNNNNNNN .............................. CCCCCTACGGTTTTGCCCCGCCCTACCACAGCCGGG 2862669 30 100.0 37 NNNNNNNNNN .............................. CGTAACCGGCTGGGAGGGCCGGGAGTAGCCGAGGATG 2862736 30 100.0 37 NNNNNNNNNN .............................. GCGAAAACCGTAGCTACCGTTGGCATTGCCATTGTCG 2862803 30 100.0 35 NNNNNNNNNN .............................. AATAAAATAGCCGCCCTATATTCCCAATCGCTTGG 2862868 30 100.0 36 NNNNNNNNNN .............................. GGCAAAAACCTACCGACATAATGAGTGCCGGAATAG 2862934 30 100.0 35 NNNNNNNNNN .............................. TACCGGTGTCCAGCCGGAAGGCAGCATCGGTGCGT 2862999 30 100.0 35 NNNNNNNNNN .............................. AGTTGAACAGGTAGAGGTGTATGTAAATGATACCT 2863064 30 100.0 37 NNNNNNNNNN .............................. CAGTATCAAGCTCCTCGGTCTTATCCTCGTTTTTGTT 2863131 30 100.0 36 NNNNNNNNNN .............................. CCTAGATGCCGGTCCAGGGCGGACCCCCAGTGCTCA 2863197 30 100.0 35 NNNNNNNNNN .............................. TTGTGCGCCGCATACTTCGACACCCAAATACCGGT 2863262 30 100.0 35 NNNNNNNNNN .............................. CATGTGCGAATCGCCTGTTGTTGGTGAGGTTGTGA 2863327 30 100.0 35 NNNNNNNNNN .............................. GCTAAACAGTGGGCAAACGCAAAGGACACAAAGGG 2863392 30 100.0 35 NNNNNNNNNN .............................. GTTATTGCTTTTTCCTTCATGTTTCATCCTCCCAT 2863457 30 100.0 37 NNNNNNNNNN .............................. CCAGGTCCCCCTCTACTACCCGCCCCAGCACTTCGGC 2863524 30 100.0 35 NNNNNNNNNN .............................. CACGATTTTAGTGCGGCAAATAGCGCAGCACAGGG 2863589 30 100.0 36 NNNNNNNNNN .............................. CGCAGGTGATGATCCGTGAATATAATGGTCTGCGGG 2863655 30 100.0 37 NNNNNNNNNN .............................. CGCACATCTGCTGGCGGGTCAGGTTATCGTGGAGATT 2863722 30 100.0 35 NNNNNNNNNN .............................. CTTTAATGTCCGATATATCGCGGTTTTACAATTTA 2863787 30 100.0 35 NNNNNNNNNN .............................. TAGTCGGCCACATTAGGTGGTCGCGAATTCGAAAT 2863852 30 100.0 35 NNNNNNNNNN .............................. TACGGACCAGTGACGGATATGCTGGTCTGGGATTA 2863917 30 100.0 36 NNNNNNNNNN .............................. GGAGAAAGAAGGGGTTGGGTATTGCCCCTATACTCA 2863983 30 100.0 36 NNNNNNNNNN .............................. CGGAGAAGAAGTTGAATGCGGTTGTTTTGCTGACGA 2864049 30 100.0 36 NNNNNNNNNN .............................. GCCCAGAATTGGTGTACTATGCGCCGATAGACAATA 2864115 30 100.0 37 NNNNNNNNNN .............................. GCGGCGTGGTCGTTTGGGTGGTAGGGGACGCAACTAT 2864182 30 100.0 36 NNNNNNNNNN .............................. TTGGCTGAGAAATTTCCAGCCAAACGGGGATGAAAA 2864248 30 100.0 35 NNNNNNNNNN .............................. GCTATTAGGGTGCATGGGCTTACCGTTCCATTGCG 2864313 30 100.0 36 NNNNNNNNNN .............................. CCGGTGGAGGCGGGTCGATCTATAAGTCAGCTGATA 2864379 30 100.0 37 NNNNNNNNNN .............................. ATACCGACTTTTTTACTTATCGGCATCAACTTTTATA 2864446 30 100.0 36 NNNNNNNNNN .............................. TTGTTCCCGCTCCAATAATACCAACCTCCCCCTGCA 2864512 30 100.0 35 NNNNNNNNNN .............................. TAGTAGGGGAATAAATGTTATATACCTTTTCAATG 2864577 30 100.0 35 NNNNNNNNNN .............................. TTTATCACCTCACTTAATAACCCGTCTAATACTTT 2864642 30 100.0 35 NNNNNNNNNN .............................. GGCACTGCTACAAGCAGGCCAATGTCAACTCGTTG 2864707 30 100.0 36 NNNNNNNNNN .............................. CTTGCGAGTAGCGCAAAAGACCTGGCCGGATGAGAT 2864773 30 100.0 36 NNNNNNNNNN .............................. AAAAGCAAATAGCCAAAACATAAAGCTTATGCTCTG 2864839 30 100.0 38 NNNNNNNNNN .............................. AATGAAATTTTTCTGCCAGTCGGACTGCTCAATTTTGA 2864907 30 100.0 37 NNNNNNNNNN .............................. TGAAACAGTGTGCTTTTGCCTATCCCCTGGGGTCCAA 2864974 30 100.0 37 NNNNNNNNNN .............................. TAAATTCACCGTCCGCGGCCGTGCTGGCCCAGTACAT 2865041 30 100.0 36 NNNNNNNNNN .............................. GAGAGAGGAAAGGTTTTTCCATGGTACGGTTTTAGG 2865107 30 100.0 35 NNNNNNNNNN .............................. GATAAGGTTAAGCCCACTCATATTTACGATTTCCT 2865172 30 100.0 35 NNNNNNNNNN .............................. TGTATAGTGGGCTCCATACTCTGACCGGTAACCTC 2865237 30 100.0 38 NNNNNNNNNN .............................. AGGGTTTCGAACCCACGACTTCTACCGTGTGAATTATA 2865305 30 100.0 35 NNNNNNNNNN .............................. AAAAACAGAAAGGGGTGACATAATGCCAAACTATG 2865370 30 100.0 36 NNNNNNNNNN .............................. CCGAAGTTGAATTCTATATTCCTACGCGCTGGGATA 2865436 30 100.0 37 NNNNNNNNNN .............................. CGTACTTTTACCGCCGACCCGCTATATTCCAATGACA 2865503 30 100.0 34 NNNNNNNNNN .............................. GCGCATCGGCGACAGAAACCTTCGCCCCCGTCAT 2865567 30 100.0 36 NNNNNNNNNN .............................. TCCTAAAGTCATTTACCGGGAAACTTCGCCAGCAGA 2865633 30 100.0 37 NNNNNNNNNN .............................. GCAAAGTCTTTGTTTGCCAGTATGTCGGCGGCAGGCA 2865700 30 100.0 36 NNNNNNNNNN .............................. AAATAATGCAGTAAAAAGACCAGGCCTGGCTACTAT 2865766 30 100.0 35 NNNNNNNNNN .............................. TGCTCCGGGCGATAATACCGGGGCAGTGATAGGGG 2865831 30 100.0 37 NNNNNNNNNN .............................. AAGGGGAAACCTTGCAACGTGACCATGCACTTCCTCT 2865898 30 100.0 37 NNNNNNNNNN .............................. GGGCAAGTATTAAACAATGTTACCGGAAACCAGGTGG 2865965 30 100.0 35 NNNNNNNNNN .............................. AAAAAGCCGGGGGCAATTCCCCGGCTTCAACTACT 2866030 30 100.0 34 NNNNNNNNNN .............................. TGTTTTCGCTGTCTAAATTGTCCAGGTCGTCATA 2866094 30 100.0 36 NNNNNNNNNN .............................. GCAGCATATCTTCAAATATTGGGTTGACCATTACGA 2866160 30 100.0 37 NNNNNNNNNN .............................. TAAACATATCCCGGAAAAGGCTATGCACGCAGGCCAG 2866227 30 100.0 35 NNNNNNNNNN .............................. CCTGTTCCGGCGGCTCCTTCTGAAACTCCCTCGGA 2866292 30 100.0 37 NNNNNNNNNN .............................. CCCCGTGCCTTCAAGCTGCAGAAGCTATCATCGCCTA 2866359 30 100.0 35 NNNNNNNNNN .............................. ACAGAAAGCCCACGTCTTTAGGCGTGGGAGTATGT 2866424 30 100.0 35 NNNNNNNNNN .............................. GGTCAAAACAACCTCGTCCCCGACCTTAAGCCCCT 2866489 30 100.0 35 NNNNNNNNNN .............................. TCCGAGCCACTCCACTGGGACCATTCGTGCCACAG 2866554 30 100.0 35 NNNNNNNNNN .............................. ACATCAACTGCCACAACTGCCTTTTGGCTACTTGA 2866619 30 100.0 35 NNNNNNNNNN .............................. GAAAACGGGTATAGCATGCTTGATGGAAAACAACG 2866684 30 100.0 37 NNNNNNNNNN .............................. TTGCCGGGACAAAATCAGCTACAATCAATGACGATTA 2866751 30 100.0 36 NNNNNNNNNN .............................. ATTTCTACAGGCAATATATTCGGGTACTCTTACCCA 2866817 30 100.0 38 NNNNNNNNNN .............................. TTTGATTGGCATTTTATTACCTTCTTTCATTTTTATAT 2866885 30 100.0 39 NNNNNNNNNN .............................. GAAACGGTTATTTGGTTTCTATTTTAAATATTTATCCTA 2866954 30 100.0 36 NNNNNNNNNN .............................. AATCATCAGTTCCAAAGTCACGAGAACATATTTTAT 2867020 30 100.0 36 NNNNNNNNNN .............................. GCATGGTCGGGGTGATGTTGCTGGGCTAGTTCCCGG 2867086 30 100.0 35 NNNNNNNNNN .............................. TATAGTTCTGTTATTTTGTTACCTGGAAGGTATTT 2867151 30 100.0 35 NNNNNNNNNN .............................. CAGGAAGAAAGAGGATATCACGCAATATTGGAACG 2867216 30 100.0 36 NNNNNNNNNN .............................. TAATTTTTTCTTTTAATTCTTGTCGATCTCTCACAT 2867282 30 100.0 36 NNNNNNNNNN .............................. AAAGGGGAACTATTTCAATCAATCCAAGAGGCATTA 2867348 30 100.0 35 NNNNNNNNNN .............................. CTTAACTGTGATTCTGTTATAGTTCCCTGGATAAA 2867413 30 100.0 36 NNNNNNNNNN .............................. TTTTTTTACCTTGCTTGACTGTTTTTAAATTGCATA 2867479 30 100.0 36 NNNNNNNNNN .............................. TTCCCTTTCTACTTCCTTTGTGTTCATTTCACATTT 2867545 30 100.0 36 NNNNNNNNNN .............................. TATAGTCTATAGTGTAACCTGCGGCCTTAATCCGGG 2867611 30 100.0 36 NNNNNNNNNN .............................. TGTAATTCCTTTTATCTTGCGCTGTTATTCTATCAG 2867677 30 100.0 35 NNNNNNNNNN .............................. ATGATAGTACCATGCGCATTTTTTGCCGGAGAATT 2867742 30 100.0 37 NNNNNNNNNN .............................. AGATAGGAGGCCAAACAATGACAGATAAACAATATAA 2867809 30 100.0 35 NNNNNNNNNN .............................. TTTGACAATGCGGTGCAACGTGGTTTTGTTTGGGA 2867874 30 100.0 36 NNNNNNNNNN .............................. AAAATAATTAAGGAGTGGTAAACAATGGCGAGAAAA 2867940 30 100.0 38 NNNNNNNNNN .............................. GTAAATGACCGCTTAGAGGAAACTAAGGATTTTATCGA 2868008 30 100.0 37 NNNNNNNNNN .............................. GTGGTACATTCAGAAAAGTACACTGGAACAACAATAT 2868075 30 100.0 36 NNNNNNNNNN .............................. GTATTAATGGAGACACAGACGCATGTGAGGATTTAC 2868141 30 100.0 36 NNNNNNNNNN .............................. GCATCAGGAAGGTATTTTCTTGCACTTTTGACGGTA 2868207 30 100.0 37 NNNNNNNNNN .............................. GTAAAATGCCGTAATATTGGGATTTATGACAATTAAA 2868274 30 100.0 37 NNNNNNNNNN .............................. GCAGGCGATGGCGATGTTACAACAGGTAATGCAAGGA 2868341 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 186 30 36 GTTTCAATCCCCTATACGCGGGTCACAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [8,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.40,-5.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [101,249] Score: 0.18/0.18 # # Final direction: R [0.37,5.32 Confidence: HIGH] >NC_008346 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2055857 30 100.0 33 ATAGATAACA .............................. CTGCCCACGGGTTCCAGGTTCCCAGCCATGAGG 2055920 30 100.0 35 AGCCATGAGG .............................. ACTAAAAACGTCATGAATATCTCAGTAGGGCATGA 2055985 30 100.0 36 TAGGGCATGA .............................. GCAAATCAAATATGAGTTTCTGGAGTCAGTAGACCC 2056051 30 100.0 37 CAGTAGACCC .............................. TTGGGCTGATCGATCCTAACTACGGCCATAATCCCGA 2056118 30 100.0 35 ATAATCCCGA .............................. GATGCTGAGGCCGTTACCGGGTTGGGGCGACTGGT 2056183 30 100.0 36 GGCGACTGGT .............................. CAGAATCAGTTTCAACGATGAAATAACCCTAAACCT 2056249 30 100.0 36 CCCTAAACCT .............................. GGAGCGGAAGAAAAAACAATGGACCATGCACGAATT 2056315 30 100.0 TGCACGAATT .............................. GATGCTGAGG ========== ====== ====== ====== ========== ============================== 8 30 35 ATTTCAATACATCAAATGTGCCGGTTCCGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [51.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [363,170] Score: 0.18/0.18 # # Final direction: R [0.45,4.5 Confidence: HIGH] >NC_008346 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 565401 32 100.0 37 TATTATACTT ................................ GGAAATCATAACAGGCTGGCAGTTGGTGAAGACATTT 565470 32 100.0 36 GAAGACATTT ................................ ATATCTTTCAATTTATCACTACTATACTTGTGCCGG 565538 32 100.0 35 CTTGTGCCGG ................................ TATCAGATAATAGCCTAACAGATGCCCAAAAAATT 565605 32 100.0 35 CCAAAAAATT ................................ TAAGCTTATAGCATCTTGATTTGCTATTTTTTTAA 565672 32 100.0 34 ATTTTTTTAA ................................ CTACTCAAACGAACTTGAAAAAAGCATTGAAGCA 565738 32 100.0 34 CATTGAAGCA ................................ TCAGCATGATATACTTAACTCAAGAGATAAGGAA 565804 32 100.0 37 AGATAAGGAA ................................ CTGGTTTTCGTTTTGTAGTTGGTGGATGTAATTCATT 565873 32 100.0 38 GTAATTCATT ................................ TAAACCTGTTACCCGGATCACTTAAATCAAACAGGACT 565943 32 100.0 34 AAACAGGACT ................................ TTTGTCATAATCATCCATCAGGTGATACAATGCC 566009 32 100.0 35 ATACAATGCC ................................ AAGCTATCCCAACATTAAAAGAAAAAACTAACAAA 566076 32 100.0 34 AACTAACAAA ................................ ACAATTGCCGATAAAACCTATTCAATCCGCTTAA 566142 32 100.0 35 ATCCGCTTAA ................................ TTAGAGTGCTAACTAAAAACCTAAAATAAATATAA 566209 32 100.0 34 ATAAATATAA ................................ TTCATAAATCTTTAAAAAATTTTTTAAAATCTAA 566275 32 100.0 34 TAAAATCTAA ................................ CTTCAAACATTGTTATACCTCCTTGTTAATATCC 566341 32 100.0 35 GTTAATATCC ................................ TGCGAGAAATGAAAAAATATTGCATTAAATTACCT 566408 32 100.0 36 TAAATTACCT ................................ AATCGAACAAATTAAAACCCGCTACCGGGAACTAGC 566476 32 100.0 36 GGGAACTAGC ................................ TTTAATACCCTCTATAAGATATATAAGCAACTGTTA 566544 32 100.0 35 GCAACTGTTA ................................ TCTAAGGTCTGTTATGGGTATTTGTTGTAATTGTC 566611 32 100.0 34 TGTAATTGTC ................................ TTTGAAAAATACATAGCATCCAACCTAGTAGGCG 566677 32 100.0 35 CTAGTAGGCG ................................ GATAAAAGCGACCGGAAATTTGTAAACCGGGGGCG 566744 32 100.0 35 ACCGGGGGCG ................................ AAAAAATGGTAGACCTAACAGCCAGCAAATTCTCA 566811 32 100.0 35 CAAATTCTCA ................................ AATGGTGCGGAAAAGTTTTTGTAGACCGGATAAGT 566878 32 100.0 36 CCGGATAAGT ................................ CGGTCAACATAAAGCAATGTGGTATTTTTTCGGTTA 566946 32 100.0 35 TTTTCGGTTA ................................ CTTTTGCCAATTCAATTTTAAGCTGGCCGGACATA 567013 32 100.0 37 GCCGGACATA ................................ ATGTTCTACTCTATATTTTTCAGCTTCTTCCTTTGTG 567082 32 100.0 34 TTCCTTTGTG ................................ AAGGAGGTAAATAAATAAATGATAAATAACAGTA 567148 32 100.0 34 AATAACAGTA ................................ AATGGTGCGGAAAAGTTTTTGTAGACCGGATAAG 567214 32 100.0 37 ACCGGATAAG ................................ TAGTAGTGTTGAGTGCTATAAGGTAAAAGGATTAATT 567283 32 100.0 36 AGGATTAATT ................................ CATAATAGCTCATAAACAAGCAAAGCATGGCCTATC 567351 32 100.0 34 ATGGCCTATC ................................ GTATTACCTCCCCATTAATTATATTATCATTGTA 567417 32 100.0 37 TATCATTGTA ................................ TTAACATAATATCACCTGCATATTTACCGATAATTTC 567486 32 100.0 35 CGATAATTTC ................................ ATCATGGACAAGGAGCATAATTTTAGCATTGTTTG 567553 32 100.0 35 GCATTGTTTG ................................ GCCAACCTGACAACCTTTGATGTATTCCATTAATT 567620 32 100.0 33 TCCATTAATT ................................ AGATATATATTGTAAAAATATTTTATATTGCTC 567685 32 100.0 35 TATATTGCTC ................................ TTAGGCAATTACAAGTAAAATATAAATATTTAGCT 567752 32 100.0 34 ATATTTAGCT ................................ ACCGCAACAAACCATGAAACCCATAAACAATACG 567818 32 100.0 34 AAACAATACG ................................ AGTGGTCAGATATGTAAATACAATTGGAATAAGG 567884 32 100.0 37 TGGAATAAGG ................................ AGTGGTCAGATATGTAAATACAATTGGAATAAGGGAT 567953 32 100.0 35 AATAAGGGAT ................................ ATGTCGTTTTTAGTGCTTACAAATCCCTATTTCTA 568020 32 100.0 35 CCTATTTCTA ................................ AATTGGAATAAGGGATTGCACATAGTTGAATTTAT 568087 32 100.0 35 TTGAATTTAT ................................ GGGAAGTCATTTTACTTTAGTGTACTATTACACTA 568154 32 100.0 34 TATTACACTA ................................ GGGTAAATTAGTAAGAAAATAATTGCCATTTATG 568220 32 100.0 36 GCCATTTATG ................................ ATAGAACAATTTGAGTATATCACAGCTAAAAAATTA 568288 32 100.0 34 TAAAAAATTA ................................ AGAATTGCAATTGTAAAGCCGATCATAAAATAAC 568354 32 100.0 36 ATAAAATAAC ................................ AGCTATTCAAATGACCTTGAACTATCCATAGAAGCG 568422 32 100.0 34 CATAGAAGCG ................................ ATATATAAGAGTTTATCGTGGTTTTGATTATGGA 568488 32 100.0 39 TGATTATGGA ................................ AAAGCATCATATCTCTATCGCTTGTCTCCCCGGTCTTAA 568559 32 100.0 35 CCGGTCTTAA ................................ AAAGAGGCGAGAATCCTTGTGATGGGTGCAATATG 568626 32 100.0 34 GTGCAATATG ................................ TGCTGTATTGCCAGAAGATGTTAGCCAAAATGAA 568692 32 96.9 35 CCAAAATGAA ............A................... TTGGGTGGGGAAATTCTGACTGTTTACCAGGCTAT 568759 32 100.0 36 ACCAGGCTAT ................................ TCACAAGTGAGCCGGGTCTTGTCGCCCCGGGTCTCG 568827 32 96.9 CCGGGTCTCG .............A.................. CGTCAGTGAT ========== ====== ====== ====== ========== ================================ 52 32 35 GTCGCACCCCATGCGGGTGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [6,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.50,-5.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [60.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [848,193] Score: 0.18/0.18 # # Final direction: F [5.73,0 Confidence: HIGH] >NC_008497 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2249795 28 100.0 33 GCTACGTCAA ............................ TGACAACCAAAAAATATACGACTTTAACTTCTG 2249856 28 100.0 33 TTAACTTCTG ............................ CTTTCTGGTATTTCTTCTCTATGTCATGATTAA 2249917 28 100.0 33 TCATGATTAA ............................ GATGAATAAGAAAAGAAAACAAAATAATACGCA 2249978 28 100.0 ATAATACGCA ............................ ACTAAAGAAA ========== ====== ====== ====== ========== ============================ 4 28 33 GGATCACCCCCACACCTGTGGGGAATAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [7,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-10.90,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [223,141] Score: 0/0.18 # # Final direction: F [0.37,0.27 Confidence: LOW] >NC_008497 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 944685 28 100.0 33 NNNNNNNNNN A..C......T....A............ TTGGTTCAAATGCTACAAGCTCGTTTTCAGCCA 944746 28 100.0 33 NNNNNNNNNN ..............C............. CACTAAGGCAGCTAAGCCGAAAAAGGCCATCTA 944807 28 100.0 33 NNNNNNNNNN ............................ GAAAAATCTGTTGGGCTATAAGGCTACAGCAGA 944868 28 100.0 33 NNNNNNNNNN ............................ ACAGTTGTTTGTGGAATATCTTGGTACTGTCCA 944929 28 100.0 33 NNNNNNNNNN ............................ TTCATAAAAAAGCCGTCATTCCGCATTCAATGG 944990 28 100.0 1 NNNNNNNNNN ..............C............. NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 6 28 33 GGATCACCCCCACATGTGTGGGGAATAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [7,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-10.90,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1801,209] Score: 0.18/0.18 # # Final direction: R [0.55,0.68 Confidence: LOW] >NC_008498 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 8727 35 100.0 31 NNNNNNNNNN ................................... GTGGGGTGTCGTCAACGAACTTTCGCGAACG 8793 35 100.0 19 NNNNNNNNNN ................................... CAACGGTCTCCTGCGAACG 8847 35 100.0 1 NNNNNNNNNN ................................... NNNNNNNNNN ========== ====== ====== ====== ========== =================================== 3 35 25 TCCGATTTTCGGATTTTCGCTTGTAGCAAGGGTTT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:57.14%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.30,-2.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [905,1097] Score: 0/0.18 # # Final direction: R [0.27,0.37 Confidence: LOW] >NC_008529 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 756215 28 96.4 33 ATCCATTACT ..........................T. CGTTGACCGATTGCAGTTCGTGCTTTTGCGTGT 756276 28 100.0 33 TTTTGCGTGT ............................ CAAACAGTTCGTCACTTAAAGCGTGCCATTTAG 756337 28 100.0 33 TGCCATTTAG ............................ GCCGGCCGGTTTGTCCAAAAAGGCTCTAAAGGG 756398 28 100.0 33 CTCTAAAGGG ............................ TACTTTATTGCCACCGCAAAAGGATACAAAAGA 756459 28 100.0 33 ATACAAAAGA ............................ CGTGCCAAAAATTAAGTTCCTCCTCTACTAGCT 756520 28 100.0 33 TCTACTAGCT ............................ CTGATTGCTGGGGAAGCTGGGAACTGATTGCTG 756581 28 100.0 33 CTGATTGCTG ............................ CGAAGTTCGGCACCTTAAGGACAAGTCCGGAGA 756642 28 100.0 33 AGTCCGGAGA ............................ TGGCAAGCCTCCTAGAATGGCAGGTCCGATTCG 756703 28 100.0 33 GTCCGATTCG ............................ CTGGAAGCTGGAACTGGAAGCTGGAACTGGAAG 756764 28 100.0 33 GAACTGGAAG ............................ AGAGACATAACAAAAAAAGACAGTCAGCGGTTA 756825 28 100.0 33 TCAGCGGTTA ............................ CGTGTGTTAAAACGCCGTCGATTTCTTCTTCGG 756886 28 100.0 33 TCTTCTTCGG ............................ CCTCCGCGTAGACCGGGATCTTCTCGCCTTCAA 756947 28 85.7 38 TCGCCTTCAA ........................---- GATCCTGCCGTGGCAATGACCAAGATCAATCAGCAAGC 757013 28 100.0 33 ATCAGCAAGC ............................ CGAGATCCCAGGTGGCTTTGTGATGTTTGTTTC 757074 28 100.0 33 TGTTTGTTTC ............................ CCACGGGGACGCCTTCGGGGATTGGACCTCGGA 757135 28 100.0 33 GGACCTCGGA ............................ CCTGCTGGTTAAGGACAACTGGCACAGCCGCTA 757196 28 100.0 33 ACAGCCGCTA ............................ TGCGATTAGCAAGATCTGTAAATCATGTTTTCG 757257 28 100.0 33 CATGTTTTCG ............................ TGATTTTCTTGACAGCTTAAGAAAAAAAGCTAA 757318 28 100.0 33 AAAAAGCTAA ............................ CATAACCATAGTAGCTCAAAGCCCGATCAAGGG 757379 28 100.0 33 CGATCAAGGG ............................ AGTCCACGTGCGTTTGAAGAACAGCCTGCCTGT 757440 28 100.0 GCCTGCCTGT ............................ TGTGGGGCGT ========== ====== ====== ====== ========== ============================ 21 28 33 GTATTCCCCACGCAAGTGGGGGTGATCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-11.90,-10.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [31,256] Score: 0.18/0.18 # # Final direction: R [0.37,0.96 Confidence: MEDIUM] >NC_008526 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 356874 28 100.0 33 NNNNNNNNNN ............................ CTTCTCTGACTGGCTTACCGCTTCTTTGCATTT 356935 28 100.0 33 NNNNNNNNNN ............................ CGCTTTTATAACATTTATGCCGCATAAAAACAC 356996 28 100.0 33 NNNNNNNNNN ............................ CTGGCGACAATTCGATTTCTAAACGTACTACCG 357057 28 100.0 33 NNNNNNNNNN ............................ CTGGCGACAATTCGATTTCTAAACGTACTACCG 357118 28 100.0 33 NNNNNNNNNN ............................ CCAGCCATTGTAATTCCTCCTAATGCGAATTTC 357179 28 100.0 33 NNNNNNNNNN ............................ CGCGTTTGATGATGGCAGCGCGGCAACTTTAAC 357240 28 100.0 33 NNNNNNNNNN ............................ TCAAAATCGCGACCTGGTTCAAAATGCGGCTGA 357301 28 100.0 33 NNNNNNNNNN ............................ TGCTCGTGCGGTGTCTGGAGTTGCTGGCAAGTA 357362 28 100.0 33 NNNNNNNNNN ............................ CTATATTTAGCTCAATTGCAACAAGAGGGCAAA 357423 28 100.0 33 NNNNNNNNNN ............................ CGACAATAACGAGCTTGCGCTGATGGCAACTTT 357484 28 100.0 33 NNNNNNNNNN ............................ CAAGCGAGTCCGATCCTCCCGTATTGTGAGCAT 357545 28 100.0 33 NNNNNNNNNN ............................ TGGCTGTTAGTTTGGCCAGTGTTATAAGCCGCA 357606 28 100.0 33 NNNNNNNNNN ............................ CAACTGGTGCGGTAATCGGGCGGAAATTGTTAA 357667 28 100.0 33 NNNNNNNNNN ............................ CGATATTATACCGGTGTTTTTACCGGTTCTCCT 357728 28 100.0 34 NNNNNNNNNN ............................ TGAGTTTGGTATCACGCTCTTTTGTGGTCGTCAG 357790 28 100.0 33 NNNNNNNNNN ............................ TAAATGTACTTCTTCCACCACGTGGCACTATAA 357851 28 100.0 33 NNNNNNNNNN ............................ TGCCGAAGTTGAAGACATGGGTCAGGCTTTTGC 357912 28 100.0 33 NNNNNNNNNN ............................ CGACCAAAGCCAAACCAACACAGGCGAATACAA 357973 28 100.0 33 NNNNNNNNNN ............................ TAAGGTTGTCAACACGGCTTATGCCAACAAGGA 358034 28 100.0 33 NNNNNNNNNN ............................ CGACATCATCAAGGATTGCCAGTTCAACTTGGG 358095 28 100.0 33 NNNNNNNNNN ............................ TACCAGCACGGGGTTACCATGTCAACCCTTTTT 358156 28 100.0 1 NNNNNNNNNN ........GTATGTGT.AA.TC.TTCT. NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 22 28 33 GTTTTCCCCGCACATGCGGGGGTGATCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.40] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [22,66] Score: 0/0.18 # # Final direction: F [0.68,0.37 Confidence: LOW] >NC_008563 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 888139 28 100.0 32 TAGTATTTGA ............................ TGACGCCATATGCAGATCATTGAGGCGAAACC 888199 28 100.0 32 AGGCGAAACC ............................ ACGTTCGCACCGGTCAGGGTACTGCGCAGCGT 888259 28 100.0 32 TGCGCAGCGT ............................ GAAACCAGAGCGCCCGCATAAAACAGGCACAA 888319 28 100.0 32 ACAGGCACAA ............................ TGATGGCGCAGCAGTCCTCCCTCCTGCCGCCA 888379 28 100.0 CCTGCCGCCA ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT ========== ====== ====== ====== ========== ============================ 5 28 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [214,228] Score: 0/0.18 # # Final direction: F [1.51,0 Confidence: HIGH] >NC_008532 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1377229 36 100.0 30 GATAACAAAA .................................... ACAATTATTTTTCAATGAAATTAATACTAT 1377295 36 100.0 30 TTAATACTAT .................................... TTTAAAGTAGTTTTATCTTGATAAAGTTCT 1377361 36 100.0 30 ATAAAGTTCT .................................... TTTATGACAAAAGCAACTAACGAATATGAG 1377427 36 100.0 32 CGAATATGAG .................................... GTGTCTCCAATGAGGACAATATTGTACTCTGT 1377495 36 100.0 TGTACTCTGT .................................... TTAATCATGGCTACTG ========== ====== ====== ====== ========== ==================================== 5 36 30 GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-5.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [85,587] Score: 0.18/0.18 # # Final direction: R [0.27,0.55 Confidence: MEDIUM] >NC_008532 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 649125 36 100.0 29 NNNNNNNNNN .................................... ATGATGATGAAGTATCGTCATCTACTAAC 649190 36 100.0 30 NNNNNNNNNN .................................... CTTCACCTCAAATCTTAGAGCTGGACTAAA 649256 36 100.0 30 NNNNNNNNNN .................................... ATGTCTGAAAAATAACCGACCATCATTACT 649322 36 100.0 30 NNNNNNNNNN .................................... GAAGCTCATCATGTTAAGGCTAAAACCTAT 649388 36 100.0 30 NNNNNNNNNN .................................... TAGTCTAAATAGATTTCTTGCACCATTGTA 649454 36 100.0 30 NNNNNNNNNN .................................... ATTCGTGAAAAAATATCGTGAAATAGGCAA 649520 36 100.0 30 NNNNNNNNNN .................................... TCTAGGCTCATCTAAAGATAAATCAGTAGC 649586 36 100.0 31 NNNNNNNNNN .................................... TAAAAACATGGGGCGGCGGTAATAGTGTAAG 649653 36 100.0 30 NNNNNNNNNN .................................... ACAACCAGCAAAGAGAGCGCCGACAACATT 649719 36 100.0 30 NNNNNNNNNN .................................... TATAACACAGGTTTAGAGGATGTTATACTT 649785 36 100.0 31 NNNNNNNNNN .................................... CTAGAAGCTCAAGCGGTAAAAGTTGATGGCG 649852 36 100.0 30 NNNNNNNNNN .................................... CTTTGAGGGCAAGCCCTCGCCGTTCCATTT 649918 36 100.0 30 NNNNNNNNNN .................................... AACTACCAAGCAAATCAGCAATCAATAAGT 649984 36 100.0 30 NNNNNNNNNN .................................... CTATAAGTGACAATCAGCGTAGGGAATACG 650050 36 100.0 30 NNNNNNNNNN .................................... ATCAGTGCGGTATATTTACCCTAGACGCTA 650116 36 100.0 30 NNNNNNNNNN .................................... AACAGTTACTATTAATCACGATTCCAACGG 650182 36 100.0 1 NNNNNNNNNN ..................................GT NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 17 36 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:69.44%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [64,43] Score: 0/0.18 # # Final direction: F [0.41,0.37 Confidence: LOW] >NC_008563 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 897527 28 100.0 33 NNNNNNNNNN ............................ TGGATTCCAAACCGCCCACCAACAAAAACAGGT 897588 28 100.0 32 NNNNNNNNNN ............................ GATACGATCGAATTTAGTCACTGAATACCCCC 897648 28 100.0 32 NNNNNNNNNN ............................ GGGTTGCGCAATGGGCTGGCCGACGAACGCGG 897708 28 100.0 32 NNNNNNNNNN ............................ TGTGGCGCTGATGCGTCTGGGCGTCTTTGTAC 897768 28 100.0 32 NNNNNNNNNN ............................ GCGCGCAGTGCCTGATAATCAATTTTGCTCAT 897828 28 100.0 32 NNNNNNNNNN ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 897888 28 100.0 1 NNNNNNNNNN ....................TC.TC... NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 7 28 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [542,617] Score: 0/0.18 # # Final direction: F [1.92,0 Confidence: HIGH] >NC_008553 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1696036 37 100.0 35 CAGCTATGCC ..................................... TGAACGGAGATGTAAGATTTGTGGGGTTCTGCTGG 1696108 37 100.0 38 GTTCTGCTGG ..................................... TGCGCTGGATGTCGCGGGAGAGCTCATGGTGGATCTGG 1696183 37 100.0 38 GTGGATCTGG ..................................... TGATCGAGAATTTGACCTCCACGGACCGCTCGGACATC 1696258 37 100.0 37 CTCGGACATC ..................................... TTCGATGACACGACAATGTGGAGGTGGCACGAAGGAA 1696332 37 100.0 36 CACGAAGGAA ..................................... TAAGATTCTTCAGACGATCTGTGTCATTCGTGATTT 1696405 37 100.0 35 TTCGTGATTT ..................................... CTACCACCGGAGCATGGAGACCGCTTAGAATCAAT 1696477 37 100.0 37 TAGAATCAAT ..................................... TGGAGGATGACCTGGGATATGTTATACGATTCACTGA 1696551 37 100.0 36 GATTCACTGA ..................................... TAAATGCCACAATTGCGGAGAGGTTTCGAAGTTCGA 1696624 37 100.0 37 CGAAGTTCGA ..................................... CGAATCCCGACTGGAGCACTATAAAATTCTGTTCAAT 1696698 37 100.0 38 TCTGTTCAAT ..................................... TAACCCTCTTCACCCATGCGCCCATTGCTACCTCGCTC 1696773 37 100.0 37 TACCTCGCTC ..................................... TCAGTTCCCTTTTCATCGGGATTCGCCTTGCAACAAG 1696847 37 100.0 37 TTGCAACAAG ..................................... CTGTCTGTCTTCGCAGTTATCAGCGCAGCATGTGAAC 1696921 37 100.0 39 GCATGTGAAC ..................................... TGTTTTGGAATTCCGACAATGACGGGCACGGTTCAGGAT 1696997 37 100.0 39 GGTTCAGGAT ..................................... AGCTCCATCGCGCACAATCCGACTGACCAATGCCTTATC 1697073 37 100.0 39 ATGCCTTATC ..................................... TATTCGTCGGAAACTCAGGACAATTCGAGCATATCTCGA 1697149 37 100.0 36 CATATCTCGA ..................................... CATTAAAGCAGTCTTGAGATCACCCTTCACAGTCTT 1697222 37 100.0 39 TCACAGTCTT ..................................... CGGAAGGCCAACGGGGAGCCATTCGTCGGCGACGACGAA 1697298 37 100.0 36 CGACGACGAA ..................................... AACCCCTTGGGAATGGCAAATCTCCAGACCCCAAAA 1697371 37 100.0 41 GACCCCAAAA ..................................... TCTGTAGTAGTCGCTGGAGAATATCACAGGGATCTCGTTGT 1697449 37 100.0 37 ATCTCGTTGT ..................................... AACATTCAAAATGGATAAAGCCGGTCCGGAATACATT 1697523 37 100.0 39 GGAATACATT ..................................... CAAGAGTTTCCTTGATCTCATCAATAATTTTATACAGTT 1697599 37 100.0 37 TTATACAGTT ..................................... CTACTGGTGGATCGAAGAATGTTACTCCAACATGCAC 1697673 37 100.0 38 CAACATGCAC ..................................... AAATACTCCGCATCGTGATAATGAATATCCCCAGATGT 1697748 37 100.0 37 CCCCAGATGT ..................................... CTGGTATGACAAAGGTAACGATTAAATGGGATAAATC 1697822 37 100.0 36 GGGATAAATC ..................................... TGCGGCGGTTGGTGCAACGGTTACCGGTGGAGTTGT 1697895 37 100.0 37 GTGGAGTTGT ..................................... TATTCCATCTAGATCAACCTCATCAAAGTTTTTATTC 1697969 37 100.0 36 GTTTTTATTC ..................................... CAATAAATCCATCGGATGTTATTACGTTCATCTAAA 1698042 37 100.0 37 TTCATCTAAA ..................................... AAATATTTCTCTTCTCATTCAATGATCTCCAAACCCC 1698116 37 100.0 38 TCCAAACCCC ..................................... GGGTATTTCTGGAACGGAAGCCGCTACTCAATTGAGGT 1698191 37 100.0 38 CAATTGAGGT ..................................... TGGATGTTTTGAAGTCAGGAGGTGCGTCAGATCTCGGG 1698266 37 100.0 38 AGATCTCGGG ..................................... TTAACGACTTCCTCAACGGCATCCTGAGCTTTCGCGAT 1698341 37 100.0 38 CTTTCGCGAT ..................................... TATTATCTCAAAATCGTAGCGCTGTCCGGCCTGAAGAG 1698416 37 100.0 38 GCCTGAAGAG ..................................... CATATGATGTACTCGTGCCTATAGCTGATTACCAGGGT 1698491 37 100.0 39 TTACCAGGGT ..................................... CAGGCGAATTATCTTCATATCTTGCCTCCAAGTTATATA 1698567 37 100.0 38 AAGTTATATA ..................................... GCAAAAGATATTACGTGCCCGCGGCCGGACATCATAAC 1698642 37 100.0 36 ACATCATAAC ..................................... TATACATGTCACCGCGCTTTGATTACCGCATACACA 1698715 37 100.0 38 CGCATACACA ..................................... TATGATATGATTATGCATATTATTGAGATATACATATA 1698790 37 100.0 37 TATACATATA ..................................... TTGGGCGAGTCTCGAGGCGGAACCCCGCCTCGGAAAA 1698864 37 100.0 40 CCTCGGAAAA ..................................... GCATCTCATTTTGCATCAGCTCCTTACAGAGGGAGCTGAT 1698941 37 100.0 36 GGGAGCTGAT ..................................... CAATCAGCTCACATACAATTAGAAATCATACAAACA 1699014 37 100.0 35 CATACAAACA ..................................... TGATGTGGTATTCCTGAGTACCAGCGGGAGTTGGT 1699086 37 100.0 36 GGGAGTTGGT ..................................... TATAACTTTCTAACTCATCTTTGAGATCACTCACCA 1699159 37 100.0 39 TCACTCACCA ..................................... AATTTAATTTCGTCGAGGATCATATCAACTTTTTCCAAA 1699235 37 100.0 35 TTTTTCCAAA ..................................... AAATATCTCGGAGGAGAAAATAAAATCGAAGTGAA 1699307 37 100.0 38 TCGAAGTGAA ..................................... TCGACGTAATCCGGACTGCATACCCATGCCATTCGATT 1699382 37 100.0 38 CCATTCGATT ..................................... AAGACAAGCTCGTTTGATGGATAATCCGCGCCCAGCTC 1699457 37 100.0 38 CGCCCAGCTC ..................................... GAGTGAGATGGCTCAGAAGGATTACTATGAGATACTCG 1699532 37 100.0 36 GAGATACTCG ..................................... TCGAACAACGACTCGCCAGGAGCCGACTTCGCATGG 1699605 37 100.0 38 CTTCGCATGG ..................................... GCATTGCATGAATCGAATTATCCGTATCTGCATCTTTC 1699680 37 100.0 38 TGCATCTTTC ..................................... CTGTCCCCGTTCAAGTATGGTTATCATGGACTCCAGGG 1699755 37 100.0 38 GACTCCAGGG ..................................... GTCCAATATTCATCCCCGCGCGGCTGTACGACAATCCC 1699830 37 100.0 37 CGACAATCCC ..................................... TCCCGGATTCCGTGGAAGTGCTCCTGCAGGCATAGGT 1699904 37 100.0 39 AGGCATAGGT ..................................... AAAATTTTCAATAAATCCATCTCTGGTCCTTACTCGCAT 1699980 37 100.0 39 TTACTCGCAT ..................................... CGACTCCGGAGGCCGGCATGCTCCAGCCAGCGGAGCAAA 1700056 37 100.0 37 GCGGAGCAAA ..................................... CCTGACGCATACTGGTAGTATGCGTCATCTCTATACA 1700130 37 100.0 38 TCTCTATACA ..................................... ATATTGATGGATTCATGGAAGTACGATGCTGAGAAGGG 1700205 37 100.0 38 CTGAGAAGGG ..................................... CTGCTCACGCGGGCATACTTTCTGGCTGGCTCTGAGGT 1700280 37 100.0 35 GCTCTGAGGT ..................................... TCGTGATTCCGCCATCCGTAATACTCTTCCTCACA 1700352 37 100.0 32 CTTCCTCACA ..................................... CCGCCCATTGCAGACTTGAATGCGGAGATGAG 1700421 37 97.3 CGGAGATGAG ....................................G ATAGGGATT ========== ====== ====== ====== ========== ===================================== 60 37 37 GTCGCAACGAGTGAGAAAACCCGATAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:51.35%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.80,-4.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [113,26] Score: 0.18/0.18 # # Final direction: F [5.46,0 Confidence: HIGH] >NC_008536 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================== ====== 6771394 22 100.0 41 NNNNNNNNNN ...................... CTCCACCAACGCCGCCACGGCCGCCAACACCGCCGCGTCCG 6771457 22 100.0 50 NNNNNNNNNN ...................... CGCCACCTACTCCACCGACACCGCCGACGCCACCGACGCCACCTACTCCA 6771529 22 100.0 1 NNNNNNNNNN ...................... NNNNNNNNNN ========== ====== ====== ====== ========== ====================== 3 22 45 CCGACGCCGCCAACACCGCCGA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [33.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [638,948] Score: 0/0.18 # # Final direction: F [0.37,0.27 Confidence: LOW] >NC_008553 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 670839 37 100.0 37 NNNNNNNNNN ..................................... TTTCCGGATTAGAATAATAAGGAACTTCCGGTACGGG 670913 37 100.0 37 NNNNNNNNNN ..................................... GGTATACTAAGCGTACCGTTCGTCTCAACATCGACTA 670987 37 100.0 37 NNNNNNNNNN ..................................... ACACCATATGCTCCGGGCAGAGGAGCATGTTCACACT 671061 37 100.0 36 NNNNNNNNNN ..................................... CCAGTCCTCCTCCTCAGGAGGACTGGCTTTTTCAAA 671134 37 100.0 34 NNNNNNNNNN ..................................... CACAATAAATCCCCCTTTGAAAACGAGTTCAAGC 671205 37 100.0 38 NNNNNNNNNN ..................................... TATGTAGCTGCATATCTACACCTCCACGGATATAAGAG 671280 37 100.0 37 NNNNNNNNNN ..................................... TCTTCTGGCTCTGGCACGGCGAGAACTATCTCGCCGT 671354 37 100.0 36 NNNNNNNNNN ..................................... TCCAAATTACCAAGACAAACATGCTTGTCATGGGTG 671427 37 100.0 38 NNNNNNNNNN ..................................... CTGCGAACTTTGCCATGAGCACCTCTTCGTGAGGTGCT 671502 37 100.0 38 NNNNNNNNNN ..................................... GATGATTAATCTCATAACTGGTGAGATTTTCGACTCTC 671577 37 100.0 36 NNNNNNNNNN ..................................... CCTGTTGATGGTGCTCAGTGACGTTTCGATAGAAGA 671650 37 100.0 36 NNNNNNNNNN ..................................... AACTGATTTCCTTGTCGGCAAATTTGTTGTTGTAGA 671723 37 100.0 37 NNNNNNNNNN ..................................... CCTCCTAGCCCTTTATTCGCTGGCTGGAGCTTCTGCT 671797 37 100.0 35 NNNNNNNNNN ..................................... TACAATTCCTTCCCGCACTCTGAGCACCTCACGAA 671869 37 100.0 36 NNNNNNNNNN ..................................... AGATGAACTGATACCAGTTCACCTCGGTCGTTTCGA 671942 37 100.0 36 NNNNNNNNNN ..................................... GGAAATCCCAGACCCCGCTGAGTGTATCTTTCAGTT 672015 37 100.0 35 NNNNNNNNNN ..................................... TCCATTCTCGAGCGGAAACGCGCTCGGGCCGAGGA 672087 37 100.0 36 NNNNNNNNNN ..................................... ACTGCCTGCTGCTCAAAGCCGGCGAAGGTGAACCTG 672160 37 100.0 37 NNNNNNNNNN ..................................... AGGTATCAGGAGACCTGCGGAGCAAGTACACTCCAGG 672234 37 100.0 38 NNNNNNNNNN ..................................... CCGACGATTTTGACTCAAACCAAGCGGTGTATGTCGAG 672309 37 100.0 45 NNNNNNNNNN ..................................... TCGTTTTTTGTCGCGCGCACAATCTCACGATACCAACATCATCAA 672391 37 100.0 36 NNNNNNNNNN ..................................... CCAGCAGCGATCTTACCTCTGAGCAATACTCGCCGC 672464 37 100.0 36 NNNNNNNNNN ..................................... ATGAACTCATCCGAGCGATTCCTGTAGATCTGGCCG 672537 37 100.0 35 NNNNNNNNNN ..................................... ACTACTCCTTTGTCTGGAAGATCCAGCATTTACTT 672609 37 100.0 35 NNNNNNNNNN ..................................... TGGCGTCATCAGAATAACCAAGAGCTTTCATTAGA 672681 37 100.0 36 NNNNNNNNNN ..................................... ATTAAATCCTTATCCAGCCTGGTTAAGCCTTACGAT 672754 37 100.0 37 NNNNNNNNNN ..................................... ATCTACTAGCGTCGCTTGCGGCGCAAGTAGATATAGT 672828 37 100.0 34 NNNNNNNNNN ..................................... AAGAATTGTAACTCGTATTAATGGGGCAAATCAA 672899 37 100.0 36 NNNNNNNNNN ..................................... TCTCGGTTAACGGCGAGATAGTCCTCGCCGTCCCAA 672972 37 100.0 38 NNNNNNNNNN ..................................... TCCTACGCCATACGGCTAGCGTGAAAAAAAATGCCGTA 673047 37 100.0 35 NNNNNNNNNN ..................................... CGCCTCCCAGTTCTCGTCGTTCCATACTGTCTCAG 673119 37 100.0 36 NNNNNNNNNN ..................................... AAGTTCCAGGTACTTCTCCTGTCCCGGTGGAATGAT 673192 37 100.0 35 NNNNNNNNNN ..................................... AAAGATGTCATGATCGCATCGGTGATCGGCTCGGT 673264 37 100.0 43 NNNNNNNNNN ..................................... ACAGCTTAGCGGTCTTGTTCTGGCCCGACAGCGCCTCCTCCTG 673344 37 100.0 35 NNNNNNNNNN ..................................... CCTCATCGGGTACTGGTGAGCAGCCCTCGCATCCT 673416 37 100.0 35 NNNNNNNNNN ..................................... GATTTGCCCCTGGGCATATCGGATCACTATCTGAT 673488 37 100.0 35 NNNNNNNNNN ..................................... TCACGAACATGTACCGACTGCGGCGCTTCACCCGC 673560 37 100.0 36 NNNNNNNNNN ..................................... CGTCATTCACGTTCTCCTACCCGATAATTCCCGGGA 673633 37 100.0 36 NNNNNNNNNN ..................................... ATCTCGCTCAATGTCAGAGACGCTCTAGTATCTGGA 673706 37 100.0 35 NNNNNNNNNN ..................................... TCGAGGAGGTGAGAGGACGGCTAAACTGCGACGTG 673778 37 100.0 36 NNNNNNNNNN ..................................... CCGACTTGATTCAGATGAGAGTCGGATCTTCTGGGA 673851 37 100.0 37 NNNNNNNNNN ..................................... TTTGGTTCTGGTGCTGTCATTTTTTTCTCCTCCACGG 673925 37 100.0 37 NNNNNNNNNN ..................................... TATTTAGATTTATTTGAAGGCCAGCGGCTCCAGCCAG 673999 37 100.0 37 NNNNNNNNNN ..................................... ATGTCTCCGACAACTTGCAACGGATAATCATTACCAA 674073 37 100.0 37 NNNNNNNNNN ..................................... TGACCTGGACTAAATTTGACATGTCGAAGGAGGAGGA 674147 37 100.0 34 NNNNNNNNNN ..................................... ATCACGGCTAGGTAGCCTAAATACTCCTTTTGGT 674218 37 100.0 37 NNNNNNNNNN ..................................... CCTCCAAATACCATATACGCATTATTGGTATATAAAG 674292 37 100.0 35 NNNNNNNNNN ..................................... ACCTAATGCAGCGGCTCGACAAAGAAGTGCTCAGG 674364 37 100.0 36 NNNNNNNNNN ..................................... GAGCGCAAAGCACGAGATGCCTTCTTCAGGCGGGAG 674437 37 100.0 37 NNNNNNNNNN ..................................... TTATGTTCCGGTCCACGTACCGGTATGGTCGTGAAAG 674511 37 100.0 35 NNNNNNNNNN ..................................... ACAATCTTCTATTTCGCTGCGCACGCCAGCAACGA 674583 37 100.0 36 NNNNNNNNNN ..................................... ACGCGCAGAGGATAACGGAGCTCATGACCGTTCCGA 674656 37 100.0 37 NNNNNNNNNN ..................................... CGAATTCTCTGAGCATAAGTGATATCAAAAAAATATA 674730 37 100.0 37 NNNNNNNNNN ..................................... TATTTAGATTTATTTGAAGGCCAGCGGCTCCAGCCAG 674804 37 100.0 37 NNNNNNNNNN ..................................... ATGTCTCCGACAACTTGCAACGGATAATCATTACCAA 674878 37 100.0 37 NNNNNNNNNN ..................................... TGACCTGGACTAAATTTGACATGTCGAAGGAGGAGGA 674952 37 100.0 37 NNNNNNNNNN ..................................... CGCCCACAGCGATAGGTTTTCGAATAATGAAAAAGCG 675026 37 100.0 36 NNNNNNNNNN ..................................... ACAGAATCTTCGACCATGATCAGGAACTCATTCATT 675099 37 100.0 36 NNNNNNNNNN ..................................... GCAATTTTCCAGCATGCATCACAACAGAATCACGAA 675172 37 100.0 37 NNNNNNNNNN ..................................... TATGGAGACTTCTGGAAGAAACCCTCTCAACACTCTC 675246 37 100.0 35 NNNNNNNNNN ..................................... TCGTCAGGGCATTCGCCAGGCATATGCTGTGTGTC 675318 37 100.0 36 NNNNNNNNNN ..................................... TCCGCCTGGCTCCACCTGCGACGGCGACCATTCAGT 675391 37 100.0 35 NNNNNNNNNN ..................................... CTTTCTGCTACGATGGGGGGTGTCACGATCCACGT 675463 37 100.0 36 NNNNNNNNNN ..................................... TCTCCAGCAGACTTTGCGACAAGCTCTCCAGTCTGC 675536 37 100.0 36 NNNNNNNNNN ..................................... TGACACCTTCATTATATAATACAGAGCATAATATGG 675609 37 100.0 35 NNNNNNNNNN ..................................... TGTTGAATACTGTAAGAAGAACAATCTCGCATATA 675681 37 100.0 37 NNNNNNNNNN ..................................... CGGGATACGTTCAAGCGATCAGCGGATGGAATGAAGC 675755 37 100.0 36 NNNNNNNNNN ..................................... TATACAATGAAAGTCTATATGGTAAATAGAGGCCCG 675828 37 100.0 37 NNNNNNNNNN ..................................... CGCATAAAATGCGCATGTTCTAAAAATAATCCCAAGC 675902 37 100.0 35 NNNNNNNNNN ..................................... ATCTCTGATGCAGGAGGAACGGTCGCAACATCCGG 675974 37 100.0 37 NNNNNNNNNN ..................................... CGAACAACTTTAAGATCTGTACGGAACTCGGTCTCAG 676048 37 100.0 36 NNNNNNNNNN ..................................... ACTTGACTTTTGTATCCAACCAACACATCTTTCGAT 676121 37 100.0 36 NNNNNNNNNN ..................................... ACGATTGATACGAACGTATTCTGAAAGGATGAAGAT 676194 37 100.0 38 NNNNNNNNNN ..................................... TCCTTGCAAATCTCCACAGATCGAAGATCGAGGATTGA 676269 37 100.0 34 NNNNNNNNNN ..................................... TCCTTATTAGGATGTGTTCAACGCCGTCGGCATT 676340 37 100.0 36 NNNNNNNNNN ..................................... CGAACGCTCTGGTCTTTGAGCGCTCGTAACTATTTT 676413 37 100.0 36 NNNNNNNNNN ..................................... AAATTCCAGCCCAGGATGGGCTGAAGGCGCTCATCC 676486 37 100.0 37 NNNNNNNNNN ..................................... CCCGAATGAATTCACCGTATATGGTACATCGGGAATT 676560 37 100.0 37 NNNNNNNNNN ..................................... TCGCATTTAATGTGTATCGTACACACTTGAAGCCGGA 676634 37 100.0 38 NNNNNNNNNN ..................................... CTCCTGGGGATACGCCCCATAATATACGTATACGTCAT 676709 37 100.0 36 NNNNNNNNNN ..................................... CATCGAGTGGATAAAAAAGACACTCGATGACGAGGG 676782 37 100.0 35 NNNNNNNNNN ..................................... TATATTTCCCTCTCGGGAGACTCGGGAGAATTACA 676854 37 100.0 36 NNNNNNNNNN ..................................... TGCATCCAGCGCTTCTGCATCATCAAAGCAATTCGA 676927 37 100.0 36 NNNNNNNNNN ..................................... ACGCTGCCTTCGATATCATGTCGGCGACATGCTTGT 677000 37 100.0 34 NNNNNNNNNN ..................................... TACACAGCCCTGAGCCAGCGGGTCTCGGGGGCTG 677071 37 100.0 37 NNNNNNNNNN ..................................... TCGAAAACGTTGTCAGCGTGCCCAGTGAACCTCCAAC 677145 37 100.0 21 NNNNNNNNNN ..................................... ACAATTTAGGAAAAAAAAAAA 677203 37 100.0 40 NNNNNNNNNN ..................................... CGGACACAATCGGGTGGACAAATCTGCTCATTCAGTTCTG 677280 37 100.0 38 NNNNNNNNNN ..................................... TATGAATCGGATGCGCGACGCGATAGCATCGCTATCTG 677355 37 100.0 38 NNNNNNNNNN ..................................... ATCATACAGACGTGTTGCGTGTTGATTACAGAAACAAG 677430 37 100.0 36 NNNNNNNNNN ..................................... CGCCATTCGAAATTCGTGGCGCGGGGGAGCCCTGGA 677503 37 100.0 38 NNNNNNNNNN ..................................... TGTCACACAAAACGCGAAATCAATACCGGTATCTACAA 677578 37 100.0 36 NNNNNNNNNN ..................................... CTGCGTATCTCCACGCACTGCACGGGTTGTCGAAAT 677651 37 100.0 36 NNNNNNNNNN ..................................... CCTCGACAACCTGACCGTTCTTCACTACTGCCTGAA 677724 37 100.0 36 NNNNNNNNNN ..................................... GCCCATATCTCTTCGTGATGCTCCGCGGTCCTGCTG 677797 37 100.0 37 NNNNNNNNNN ..................................... AGCAGCATCTTTTTTCACCTCATGATATCATTATGAC 677871 37 100.0 38 NNNNNNNNNN ..................................... TTTCTATACTGGGGATGTTGTACTTCCTTGCCTTCCTT 677946 37 100.0 1 NNNNNNNNNN ..................................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 98 37 36 GTCGAAGAGCGAGTTCCAGGAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.05%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [48.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [817,12] Score: 0.18/0.18 # # Final direction: F [4.95,0.37 Confidence: HIGH] >NC_008554 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1684126 36 100.0 35 NNNNNNNNNN .................................... TCTTTCGCGTTCAGTCTCTGTACTTTCATCGTCAG 1684197 36 100.0 35 NNNNNNNNNN .................................... TCGCCTTCTTCCTGGCCGCTTCCCTCAGTCTCTTC 1684268 36 100.0 38 NNNNNNNNNN .................................... CGTCGCCTTCTTCCTGGCCGCTTCCCTCAGTCTCTTCA 1684342 36 100.0 35 NNNNNNNNNN .................................... TGCGTACTACTGATTCATGTTCCAGAAAAAAAATT 1684413 36 100.0 38 NNNNNNNNNN .................................... CTTCATCCGGTAATCTGACCATCAACCCTTTCATCTTG 1684487 36 100.0 36 NNNNNNNNNN .................................... GCCTTTCCCCGAAAAAACCGTCGCGTTCCATTTTTC 1684559 36 100.0 36 NNNNNNNNNN .................................... ATGGTTCCTTCTCCTTCTTGGTTGTGCCCCTTTCGG 1684631 36 100.0 37 NNNNNNNNNN .................................... CCTGCCACTCCTCGACCTCTGCCTCCAGCTTCATACA 1684704 36 100.0 36 NNNNNNNNNN .................................... TTGGATGTATGCCGCGCTATTCTCCAACGTCTGTGG 1684776 36 100.0 36 NNNNNNNNNN .................................... CTTGGTTGTGCCCCTTTCGGGGCTCTGTAGTCATCG 1684848 36 100.0 36 NNNNNNNNNN .................................... TCAACCCAGGAAACCACTATCCCGGCTGGATTTTCC 1684920 36 100.0 36 NNNNNNNNNN .................................... CGGTCATGGCTCGTTCGTTTGCTCCGATTTCGTTGA 1684992 36 100.0 38 NNNNNNNNNN .................................... TTGGGTTGTGTGCCTTTCTCCGAAAAATCCGTCGCGTT 1685066 36 100.0 35 NNNNNNNNNN .................................... TTTTCTTCTCCTTTGGTTGTGCCCCTTCCCGGGGC 1685137 36 100.0 36 NNNNNNNNNN .................................... GTCTCAAGCCGATCGGGGCTCTGTTGTCATCGCCTC 1685209 36 100.0 35 NNNNNNNNNN .................................... GGGATTTCCCGTCCCATCCGAGGCGCTTGGCCTCG 1685280 36 100.0 37 NNNNNNNNNN .................................... CACTACGACCTCACCAGTTGTGAGTGTCACAACTGGT 1685353 36 100.0 37 NNNNNNNNNN .................................... ATGTCCCGGTCGAGCATCTCGATGCTCTCCGGGTACT 1685426 36 100.0 36 NNNNNNNNNN .................................... TCCTTTCCATAAAATCTGTCCAAAATCTCGTCCATG 1685498 36 100.0 37 NNNNNNNNNN .................................... TCCCTTCTCATCGGAGACCCCTTTCTGCCCCTTTCGG 1685571 36 100.0 37 NNNNNNNNNN .................................... CATTGCTGACGGGCAGGGGGAAATCAGGAGAGGTTGA 1685644 36 100.0 37 NNNNNNNNNN .................................... TCATCGCGTCACCCTGGAATCCGAGGTCAACCCGGTA 1685717 36 100.0 35 NNNNNNNNNN .................................... TTTCGCCTAGCCCGCCTCGGGTGCCTCCGGGGCGT 1685788 36 100.0 36 NNNNNNNNNN .................................... CACATGGCGGCTCAAGGCATACGATATCTGGACCGG 1685860 36 100.0 37 NNNNNNNNNN .................................... TGCGTTTGCTGGTCGCTTGACGAATTGCAGCGAGTAC 1685933 36 100.0 35 NNNNNNNNNN .................................... ACTCATGGTCTCTCCTTTCGGTTGTGCCCATCACT 1686004 36 100.0 37 NNNNNNNNNN .................................... TAGGGGTGATTTTTGGCATTATTTCCTCCCTCCTGCA 1686077 36 100.0 37 NNNNNNNNNN .................................... AGGCGTCCATGAGCAACTCTGCTCCGGCGTGCTTCGA 1686150 36 100.0 41 NNNNNNNNNN .................................... TGTTGCCCCGCTCCCACCCGAGACGGGATGTCCCGTCCCAT 1686227 36 100.0 36 NNNNNNNNNN .................................... TGCAATCACATGTCTGGCACTCGGATCCCACTCTGA 1686299 36 100.0 37 NNNNNNNNNN .................................... AACTGGTCGGTGTATTTACTCATGGTCTCTCCTTTCG 1686372 36 100.0 36 NNNNNNNNNN .................................... TTGCCTCTTGGATAGTCTTTCTCATTTCCTTCAAGA 1686444 36 100.0 36 NNNNNNNNNN .................................... TTGACGATACGACGGACGCTATCTGCGGTTCCGTGG 1686516 36 100.0 37 NNNNNNNNNN .................................... ATCCGCGAATTCGGCAATCGTCTGCCAGAAGAATTCC 1686589 36 100.0 39 NNNNNNNNNN .................................... AACCATGCTCCGGTGGCACACCATACAGGTGTGCATTTG 1686664 36 100.0 37 NNNNNNNNNN .................................... ATTAATGACATCAATGAGAGCACTCAATTGATTTTCA 1686737 36 100.0 36 NNNNNNNNNN .................................... ATGATCTTGATAACTGCGTGTACTCAATCGAAGTGT 1686809 36 100.0 37 NNNNNNNNNN .................................... TTATCCGTACAAAAAACGAAATGAGACCTATTCTCCT 1686882 36 100.0 36 NNNNNNNNNN .................................... TTCCGTGTTCGGGGCACGCGGCGTGCCAGTGGACGA 1686954 36 100.0 37 NNNNNNNNNN .................................... CAGCGACGCGCCGTGTCGGCGAGCAATCTTGTCCGCC 1687027 36 100.0 36 NNNNNNNNNN .................................... TTGGGACACTCAACGCGCCTAGTGGTGATCGTCATG 1687099 36 100.0 36 NNNNNNNNNN .................................... GGATTTCCTCGATCACGTCCGTTGAGCGGTCTATGG 1687171 36 100.0 37 NNNNNNNNNN .................................... CATTTGTTTTCCGAAGGCGGTCTTCAATCCGCCTTCG 1687244 36 100.0 37 NNNNNNNNNN .................................... TTTCCGACGAGACCCAATTCTCCGGGTTAAACCGAAC 1687317 36 100.0 38 NNNNNNNNNN .................................... ATGCAGCATCAAATGATCTTGATAGTTGTGTGTACTCT 1687391 36 100.0 37 NNNNNNNNNN .................................... AAGATCGGGAACAATCCATCGGTCGACCGGCCTTGTT 1687464 36 100.0 37 NNNNNNNNNN .................................... ATACTGCTCCCGATCTGGTTAGCTGATCCTGGTCAGT 1687537 36 100.0 39 NNNNNNNNNN .................................... AGGATTTTTCCGAAGTTCGTGAGGCTCACGGCCTCGTGA 1687612 36 100.0 43 NNNNNNNNNN .................................... CCCGGCTAACCCCTCGGAAGGACATGATCTGTGTGGCTGTCCT 1687691 36 100.0 34 NNNNNNNNNN .................................... ACTCCTGCGGTTGCACATGGTCTATTGTCAACTG 1687761 36 100.0 37 NNNNNNNNNN .................................... AACCCCTCGTAGACGTACAAATCCACGAGGGCGCGAG 1687834 36 100.0 36 NNNNNNNNNN .................................... GTGCCCCAGATTCACCGTCGCAAACCAGTGCCGTCT 1687906 36 100.0 39 NNNNNNNNNN .................................... ATGACGGATTCGTTTCTGACTGTGAAAGAACGCATATTT 1687981 36 100.0 35 NNNNNNNNNN .................................... TCCAGGACGGATTCGTTTCTGACTGTGAAGGCTTG 1688052 36 100.0 37 NNNNNNNNNN .................................... TTGATTGATGTCATCAAGATCACCATCATAATTAATA 1688125 36 100.0 35 NNNNNNNNNN .................................... AGAGAGTCGAGCCTCGTCAAGAACCGATCGGCATC 1688196 36 100.0 36 NNNNNNNNNN .................................... ATAATTCCGGCCGCTCTCAGGGCGGCCATGACGTCC 1688268 36 100.0 36 NNNNNNNNNN .................................... TCCCAACGCTCGGCAGGGCTCGACTCGTTCGAGAGT 1688340 36 100.0 36 NNNNNNNNNN .................................... TTGGCCTGTTTGTGCCCCGATCCGGTGTAATAATCT 1688412 36 100.0 36 NNNNNNNNNN .................................... TCCATGGCATCCCGAACGCGTTCTTTATCCCAATAA 1688484 36 100.0 34 NNNNNNNNNN .................................... TGATCCGAAAAGAGAACGGGTCCAAAGTCTTAAA 1688554 36 100.0 36 NNNNNNNNNN .................................... TGCTTCGTCATGCTCGACCTCCTTCGGGGTGTTCAG 1688626 36 100.0 36 NNNNNNNNNN .................................... TGCTTCGTCATGCTCGACCTCCTTCGGGGTGTTCAG 1688698 36 100.0 36 NNNNNNNNNN .................................... TTTGATTTTTTCCTGATCTACTTTAAAGGCATTGGC 1688770 36 100.0 37 NNNNNNNNNN .................................... TTCTGCAATTGAGATTTGGCAACACCTTTAATCTTGT 1688843 36 100.0 37 NNNNNNNNNN .................................... GCGCGAATAGCCTTGTCCCAATCGAACTGGTTCTTGT 1688916 36 100.0 37 NNNNNNNNNN .................................... GCGCGAATAGCCTTGTCCCAATCGAACTGGTTCTTGC 1688989 36 100.0 35 NNNNNNNNNN .................................... GCGGCGTAGGCCCGCTCGAAGTTGGCAATCGCTTT 1689060 36 100.0 37 NNNNNNNNNN .................................... TTCCCGGTAATCCGATGGGGCTGGCGCAGGATCACGG 1689133 36 100.0 1 NNNNNNNNNN .............T...........A...CC.TA.G NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 70 36 36 GACGGAGACAGAGCCCCGATTTGAGGGGATTGAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [10,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.60,-6.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [40.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [568,315] Score: 0/0.18 # # Final direction: F [1.15,0.27 Confidence: MEDIUM] >NC_008554 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3490182 29 100.0 32 CCGAACACGA ............................. GCTCCCCGGCCCGGCGCAACGGAACGCCACGA 3490243 29 100.0 32 AACGCCACGA ............................. GGACAGGATGCCCCATCAGGAAGGGCACCCAG 3490304 29 100.0 32 GGGCACCCAG ............................. TATGGCTACGACCGTATTAACGACGTGGATGT 3490365 29 100.0 32 ACGTGGATGT ............................. AGAACGCCCCGGCAAGGGGCACAACTAAGAAG 3490426 29 100.0 32 AACTAAGAAG ............................. TTGGGCTGTCCACTGTCTCTTCTCCGGGAAAC 3490487 29 100.0 32 TCCGGGAAAC ............................. TTCGTCATTCCATTGAATCCGAAGCTGCGGCT 3490548 29 100.0 32 AGCTGCGGCT ............................. ACGGTCGGCCAGCCAACAATATCCCCTTCGGT 3490609 29 100.0 32 CCCCTTCGGT ............................. TGCTTGGCGATATGGAGGCAAAGATCGCCGGT 3490670 29 100.0 32 GATCGCCGGT ............................. CAGTGTTATTTCATTGCCTACGGGCAGGCGCT 3490731 29 100.0 32 GGCAGGCGCT ............................. GGCGAACTACAAAAACCAACAGTAGGAGGATC 3490792 29 100.0 32 TAGGAGGATC ............................. AAAGACCGTGTGCCCTATGACCTGTGGGCGAA 3490853 29 100.0 32 TGTGGGCGAA ............................. CCGGATTTCATCCGCACCGTTCCGAGATATGC 3490914 29 100.0 32 CGAGATATGC ............................. TGCTTGGCGATATGGAGGCAAAGATCGCCGGT 3490975 29 100.0 32 GATCGCCGGT ............................. ATCATCAATTCACGGGGAAAGTCCTTACCGTG 3491036 29 100.0 32 CCTTACCGTG ............................. ACCACGTCCCAGGGGAACCCGGGGTTGTGGGT 3491097 29 100.0 32 GGTTGTGGGT ............................. CTCCTGCGCGCAATCAGAGACCAGGCCGAGCA 3491158 29 100.0 32 AGGCCGAGCA ............................. TCGAGCGATTTGGCCTGGAAGCAACCCCGGCA 3491219 29 100.0 32 AACCCCGGCA ............................. TTCATCCAAAACATTCCGTTGAGTGGCTTTCG 3491280 29 100.0 32 GTGGCTTTCG ............................. TTGCCGTTCCGGGGATGAATCAATAATTCCGA 3491341 29 100.0 32 ATAATTCCGA ............................. GAACAAACAACCCAGATGTGCTGTTATGATGG 3491402 29 100.0 32 GTTATGATGG ............................. ATTGTTCGCTGCCACCCCAACCGCCACCACAA 3491463 29 100.0 32 GCCACCACAA ............................. ACGCCTTGGTATATATGGTCTGCTGCTTCGGG 3491524 29 100.0 32 CTGCTTCGGG ............................. ATTGTTCGCTGCCACCCCAACCGCCACCACAA 3491585 29 100.0 32 GCCACCACAA ............................. ACGCCTTGGTATATATGGTCTGCTGCTTCGGG 3491646 29 100.0 32 CTGCTTCGGG ............................. CTGTCCTATCAGCACTACCTGGAGGAGAAGTG 3491707 29 100.0 32 AGGAGAAGTG ............................. ACGAGTAAAATAGATAGCCCTGGTCGGCTTGA 3491768 29 100.0 32 GTCGGCTTGA ............................. CCCGTCTATCACCAGGGGCGGATTGTCGGGTA 3491829 29 100.0 32 TTGTCGGGTA ............................. TAATCCGCGATGTGACGACCTGCGGAACAAGA 3491890 29 100.0 32 CGGAACAAGA ............................. GATGCCGTCGGGGTTCAAATTGGCGTCGCCGG 3491951 29 100.0 32 GCGTCGCCGG ............................. TCCATTACGTCGCTAATAATCATTCTTCTCTT 3492012 29 100.0 32 TTCTTCTCTT ............................. GACTGTATAGTTCCTCGACTTCAGATCCATCT 3492073 29 100.0 32 AGATCCATCT ............................. GACTGTATAGTTCCTCGACTTCAGATCCATCT 3492134 29 100.0 32 AGATCCATCT ............................. TCATGGCTGGCATCCAGATCTACCAGGAGCGG 3492195 29 100.0 32 CCAGGAGCGG ............................. CCCGAATACGTGCGCGACCTCGTGGCACTGCA 3492256 29 100.0 32 TGGCACTGCA ............................. CGCAGAGGAGGTGGACAATGGCTGATCGCGTG 3492317 29 100.0 33 TGATCGCGTG ............................. GGTTTGAGGGGGCGTCCTGGGCGAAGGTGACCC 3492379 29 100.0 32 AAGGTGACCC ............................. GATTGCACGGCGGACCCGGTAACCGGCGGCAA 3492440 29 100.0 32 CCGGCGGCAA ............................. CCATCGACGCCTATTTTGAGGAGCAGGTCTCA 3492501 29 100.0 32 GCAGGTCTCA ............................. AAAGGCAATCATTGAATATCTTGGATTGAAAT 3492562 29 100.0 32 GGATTGAAAT ............................. CTCACCGGCACCATGCGTGAGCAGTACGAAGT 3492623 29 100.0 32 AGTACGAAGT ............................. ACCCCGTGGCCGACCAGGTGCAGGGATTCCGG 3492684 29 100.0 32 GGGATTCCGG ............................. GCTCGGACGTGGTGGATGGCAAACCCAATGAA 3492745 29 100.0 32 ACCCAATGAA ............................. CCGCTCTCCCGGAGCACCTTCCCCTCGGAACT 3492806 29 100.0 32 CCTCGGAACT ............................. TGCGTCCTCTGGACTGGACGCGAGAAATTGCT 3492867 29 100.0 32 AGAAATTGCT ............................. GCGTCATTCCCTGGCGGAAACCCTGGAAGGGC 3492928 29 100.0 32 CTGGAAGGGC ............................. GGGATATCGCATTCGTCCCGGCAGTGCTCCCG 3492989 29 100.0 32 AGTGCTCCCG ............................. ACCCCGTGGCCGATCAAGTCCAGGGATTCCGG 3493050 29 100.0 32 GGGATTCCGG ............................. CGGCCCGGCGAGCTCCCAGGCCACGTGCCGTA 3493111 29 100.0 32 ACGTGCCGTA ............................. TTGCGCCGCTTTTTGCGCCATGCCCTCCAGGC 3493172 29 100.0 32 CCCTCCAGGC ............................. AAAAAGCAGCAACTGAGCGATTTGGAGGCGAA 3493233 29 100.0 32 TGGAGGCGAA ............................. GGTTGGTTTTGTCCCCGGATTCGTTCCGGGAC 3493294 29 100.0 32 GTTCCGGGAC ............................. GGTTGGTTTTGTCCCCGGATTCGTTCCGGGAC 3493355 29 100.0 32 GTTCCGGGAC ............................. AGAGCCGCTGCTGTCCTATCGTATGCGCTGCT 3493416 29 100.0 32 ATGCGCTGCT ............................. CATCATATCCGCCCAGCGTCAAAATCGCTTCG 3493477 29 100.0 32 AATCGCTTCG ............................. AGATCGAAAACGCCATTCTCGAGTATCTCCGG 3493538 29 100.0 33 GTATCTCCGG ............................. TGTGAAACATGCACCCAGCACGTCCAGGGGAAA 3493600 29 100.0 32 CCAGGGGAAA ............................. AAAATAATCGAGACCGGACCACTTCCGGACCA 3493661 29 100.0 32 TTCCGGACCA ............................. GGACTTGTCACCGAAAAGTACCTGACCGTCGA 3493722 29 100.0 32 TGACCGTCGA ............................. CCCCGGCGCGGACGTCCGAGAAAGGGATAACC 3493783 29 100.0 33 AGGGATAACC ............................. CACATCGATGACCCTCGCGTCATCACCTACGAG 3493845 29 100.0 CACCTACGAG ............................. GCCCATGAAT ========== ====== ====== ====== ========== ============================= 61 29 32 GTGTTCCCCACGCGGGTGGGGATGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-12.00,-10.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [38.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1211,308] Score: 0.18/0.18 # # Final direction: R [0.55,0.64 Confidence: LOW] >NC_008576 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================= ====== 4407395 33 100.0 33 NNNNNNNNNN ................................. AGGAGGGTATGGAGGCACATATTCATTACTATT 4407461 33 100.0 35 NNNNNNNNNN ................................. ATCGACCTTATGCGTGATTTCGACTGGGGTGAAAA 4407529 33 100.0 33 NNNNNNNNNN ................................. CTAAAGCCTTTGATAGCTCGGTCAAATATTGTG 4407595 33 100.0 34 NNNNNNNNNN ................................. CATCAATTTGCAAGTCCACATCCCAGGTTGCCGC 4407662 33 100.0 35 NNNNNNNNNN ................................. TGCAGCTGTTAAGGCCATGTTAAATATCTCCTGTA 4407730 33 100.0 34 NNNNNNNNNN ................................. CTTATGGCAGCAACTGCACCTGATAGGGTTAATT 4407797 33 100.0 35 NNNNNNNNNN ................................. ATAGATGCGACTGGCAGGGTTGACCCACCTGTCAC 4407865 33 100.0 36 NNNNNNNNNN ................................. CGTTCTGTGGCTGAGGCTGCCCCACAATATTTGACC 4407934 33 100.0 35 NNNNNNNNNN ................................. CGCGATTGGCTTGAAGATGCAATCCAGGTGAACAT 4408002 33 100.0 34 NNNNNNNNNN ................................. GCCTCGAAGCCACCTAGCTATAGAATCCGGCTTT 4408069 33 100.0 35 NNNNNNNNNN ................................. TTTAACGTCTTGTTTTATATCGGATTGATTCTCGT 4408137 33 100.0 35 NNNNNNNNNN ................................. TGCATTACGCAGGTCGGCGCCGCTTAGGTTTGCGT 4408205 33 100.0 34 NNNNNNNNNN ................................. CGCCTGCTCTCGGTAGGCTCCCCATGGATCTGCC 4408272 33 100.0 35 NNNNNNNNNN ................................. TGTTGCAACGCGGGTTATGATCTCAGGCAAAAAAC 4408340 33 100.0 34 NNNNNNNNNN ................................. TCTTTCATTTGACAAAGGGATCAAGGCTGAGCAG 4408407 33 100.0 34 NNNNNNNNNN ................................. TGTCAACTCCTCGAAATATATTGCAGCATACTCG 4408474 33 100.0 33 NNNNNNNNNN ................................. AAAGAGTTAGTTGAAACAGATGATGGAGTAACC 4408540 33 100.0 33 NNNNNNNNNN ................................. TCAATTTTGCTTTGATTTTCAGTTGTTAAGTCA 4408606 33 100.0 35 NNNNNNNNNN ................................. CATGGTTACACCTATCCAATGGTCTATCCTGTGCT 4408674 33 100.0 35 NNNNNNNNNN ................................. CAAAGTTTTCGGCTGTTTTTGTTACCGCCACGACC 4408742 33 100.0 35 NNNNNNNNNN ................................. CCAGCGTAAGTGCGTACCACCAGCTCCCACCCATC 4408810 33 100.0 34 NNNNNNNNNN ................................. ATTATCAAGCGCAACTAGGGCCTCATATTTTTCG 4408877 33 100.0 35 NNNNNNNNNN ................................. AGCTCAACCATACGGTGGAAAGTAACGCCAGGGTT 4408945 33 100.0 33 NNNNNNNNNN ................................. GGGTGACATTGTTGGAGCTATTAACACCCTTGC 4409011 33 100.0 34 NNNNNNNNNN ................................. TAGGGATGCTTAGCGACCGTACTGCAACACGATC 4409078 33 100.0 33 NNNNNNNNNN ................................. TTACCATCATTATACCACACCCATAATTTAATG 4409144 33 100.0 35 NNNNNNNNNN ................................. TGGGAATGGGCAGCAAACCTACCAACGGATGAGGT 4409212 33 100.0 35 NNNNNNNNNN ................................. TTTGTCCCATATCTCCCATACTGTTAACCGCTTGC 4409280 33 100.0 36 NNNNNNNNNN ................................. ACAGGCAGCATAGATGGTTTGTAAACAACATGGATC 4409349 33 100.0 35 NNNNNNNNNN ................................. TGCCGCACAAGATGCCATGAAAAGACATGACTTAA 4409417 33 100.0 33 NNNNNNNNNN ................................. ACTTGATCTCCACGATAGCCAGACCTGCAGCGG 4409483 33 100.0 35 NNNNNNNNNN ................................. CCGCTCAAGGCTGGCATCGTCTACCCATTGCGGCC 4409551 33 100.0 35 NNNNNNNNNN ................................. GCAAAGCAGCATCGAAAGAAGTTGCTATAGGCGTG 4409619 33 100.0 35 NNNNNNNNNN ................................. GCACTAGGTAAATGGAACCATGATAATAATTAGAT 4409687 33 100.0 34 NNNNNNNNNN ................................. GATATGTGCCATTGCTTTGTGTGGTGGAAGATCA 4409754 33 100.0 35 NNNNNNNNNN ................................. ACATAGTTCTGTAACCGTTCACAATATTTAGAAAA 4409822 33 100.0 36 NNNNNNNNNN ................................. ACCAAAGAGCAGTACCAAAATATGGTAGACGATGGA 4409891 33 100.0 33 NNNNNNNNNN ................................. TTTGCGAGAGTGGCTTGCTCAGGGTCTCGCGCT 4409957 33 100.0 35 NNNNNNNNNN ................................. CGGAACCTGGAATTGCTTGCCATTTTTTGAAGTGC 4410025 33 100.0 34 NNNNNNNNNN ................................. CGGCGTGCCGACAACAAAAGCAGGGTTGGCGGCT 4410092 33 100.0 33 NNNNNNNNNN ................................. TAACCATCATTATACCACACCCATAATTTAATG 4410158 33 100.0 34 NNNNNNNNNN ................................. ATATCTCCATGTCCGAAGGGTTAGATGTTAATTG 4410225 33 100.0 33 NNNNNNNNNN ................................. TCTACTAGCACCACTCAGTAAAGATCATCGTAA 4410291 33 100.0 35 NNNNNNNNNN ................................. AAAAACATCTAGAACTTTGTCTTTTGGGACATCAT 4410359 33 100.0 33 NNNNNNNNNN ................................. GCTGCTGCTCTCTGCCGTTGCTCCGCTTGTATC 4410425 33 100.0 34 NNNNNNNNNN ................................. GAGATAATTTAGTCAGTCCCAATAGAGCGGTTTG 4410492 33 100.0 33 NNNNNNNNNN ................................. ATTTTGTCTACAGACTCACGCAGATATAACAAC 4410558 33 100.0 35 NNNNNNNNNN ................................. TAGCCATGCACGCAAAATGGTTAGCTGGTGATAAA 4410626 33 100.0 34 NNNNNNNNNN ................................. ATTAGCAACCATGTATTATTCAAATGTTGTATGA 4410693 33 100.0 34 NNNNNNNNNN ................................. CACTCTCCACGCTTGTGCTGTACCACCGCTAGCA 4410760 33 100.0 35 NNNNNNNNNN ................................. TCCTTTGCTCGCCCATTTCGGATATTGAGCGGTAA 4410828 33 100.0 35 NNNNNNNNNN ................................. CTTAGTGTCCATGTACTCAACAAGGCCAGCCGACA 4410896 33 100.0 34 NNNNNNNNNN ................................. AAGGACGCGAATCCTGACAAGATCATCTTAAAGC 4410963 33 100.0 36 NNNNNNNNNN ................................. TTGTGCATCCTTCATAGGAGTAACTTTAACCCGCCA 4411032 33 100.0 34 NNNNNNNNNN ................................. CAATTATCTATAGAGAAATACTCATCTAATGCCG 4411099 33 100.0 36 NNNNNNNNNN ................................. TCGATCAGCAGTTGCAACTGGCAAAGGCTAAAGGCG 4411168 33 100.0 33 NNNNNNNNNN ................................. GCAACATCCAGGAAACATCGCTGAGTATAACCA 4411234 33 100.0 36 NNNNNNNNNN ................................. GTAAACTCTTGAAAAGGTTGAAAAATGTCAGAATAT 4411303 33 100.0 35 NNNNNNNNNN ................................. TAGTTTGTCTTAGGTGGCAACTCAGGAACGTAACA 4411371 33 100.0 35 NNNNNNNNNN ................................. TTTAGATGGTTTAGGTTTCTTCCCAGAATCGGTGG 4411439 33 100.0 35 NNNNNNNNNN ................................. TTGTTAACCGTACTATCTTCCAGCTTTGGCAAAAT 4411507 33 100.0 34 NNNNNNNNNN ................................. GAGTCGCACACCATGCCTACACCATCGGTTTTGG 4411574 33 100.0 33 NNNNNNNNNN ................................. TTTTGAATCAAAACGATGTTATCAAAATAGAGC 4411640 33 100.0 33 NNNNNNNNNN ................................. CGCGCACAGGAGAGGTGTATTGTTTCCCGGTTA 4411706 33 100.0 36 NNNNNNNNNN ................................. GGCTCTTGTAGCCACCGCCTTACCCTTGACTGAGCC 4411775 33 100.0 33 NNNNNNNNNN ................................. TGATCATTACAACAGCGCTCCAATGTCATAAGT 4411841 33 100.0 34 NNNNNNNNNN ................................. TCCGCCGCCAGCTGCTCCACCAAAAATAGCAATA 4411908 33 100.0 34 NNNNNNNNNN ................................. TTTGTCTGCTCAGTCATTACGGTAGGCCTGCCCA 4411975 33 100.0 35 NNNNNNNNNN ................................. ATTAAGAGGTCCAAGCTATGATAAACAAGCGCATT 4412043 33 100.0 35 NNNNNNNNNN ................................. TGATTTGACGGTCGGTTAACATGGTAAGTCTCCTG 4412111 33 100.0 35 NNNNNNNNNN ................................. TTTGCGAGAGTGGCTTGCTCAGGGTCTCGCGCTGC 4412179 33 100.0 34 NNNNNNNNNN ................................. TGGACCTGCTCAGTCATTACGGTAGGCCTGCCCA 4412246 33 100.0 35 NNNNNNNNNN ................................. CGATGAGCTACGGGCCGCCCATGGTGAGCATGTCA 4412314 33 100.0 34 NNNNNNNNNN ................................. TGGTGGATTTTTGTTTACCTTTGGATAATCTCGA 4412381 33 100.0 34 NNNNNNNNNN ................................. TTTTGGGGGTAGCTTTGGCTCTGGTTGTTGCCGT 4412448 33 100.0 33 NNNNNNNNNN ................................. AAGGTTGCTGATACAAGCTATACTTACACTGCT 4412514 33 100.0 34 NNNNNNNNNN ................................. TGTTAACTCCTCGAAATATATTGCAGCATACTCG 4412581 33 100.0 35 NNNNNNNNNN ................................. CGCTCAAGGCTGGCATCGTCTACCCATTGCGGCCT 4412649 33 100.0 36 NNNNNNNNNN ................................. TGCCGCACCGTAGCTATATACCATACCAACGCAGCT 4412718 33 100.0 35 NNNNNNNNNN ................................. TGCCGCTAATGTGTCGGCCTGGATTGAACGCGCGT 4412786 33 100.0 34 NNNNNNNNNN ................................. TTTAGTGTACTGCTGTATAGGCTGAATAGATGAA 4412853 33 100.0 36 NNNNNNNNNN ................................. AAAACAAACTGTTATTGATGCATTCAGGAATGAAGG 4412922 33 100.0 33 NNNNNNNNNN ................................. TCGGACTATGTGAAAGTTTACACCTCAACAGAT 4412988 33 100.0 35 NNNNNNNNNN ................................. TCTCCTTGACAATTTTATAGCAAGGTCGATAAAGA 4413056 33 100.0 35 NNNNNNNNNN ................................. GCTGGTGGTCGAATCAACTGATACTCGCACCCACG 4413124 33 100.0 33 NNNNNNNNNN ................................. CTGATATTAAATTATTAAAAGCACCTGAAGCCG 4413190 33 100.0 35 NNNNNNNNNN ................................. AGGTAAACATGGCTCAAATGCTTATTAACCGCGAC 4413258 33 100.0 34 NNNNNNNNNN ................................. AACAAGTGCTTTACAAGCGAGCATTTGTTTGATT 4413325 33 100.0 35 NNNNNNNNNN ................................. GATGGTAGTGGACAAATGCTTAGCAAGATGTGGCA 4413393 33 100.0 35 NNNNNNNNNN ................................. ATAACATTATCAAGCATGGATGGCGCTGCCCGCTC 4413461 33 100.0 34 NNNNNNNNNN ................................. TCAACATAGGGGGAAAAGATCTCCCAGCTACCAA 4413528 33 100.0 35 NNNNNNNNNN ................................. AAGGCCGACACAGGAGCTATGAAATGAGCATTACC 4413596 33 100.0 34 NNNNNNNNNN ................................. AAATTTTTGACCCTCGTCATAGGGTCAGTATCAA 4413663 33 100.0 35 NNNNNNNNNN ................................. CGCTCCAGCCTGATTGAGGCTGGAACAGGAGAGCT 4413731 33 100.0 34 NNNNNNNNNN ................................. AAGCTCAATTTTACTCACATGTTTGGCTGCGGTT 4413798 33 100.0 34 NNNNNNNNNN ................................. CGCTCCAGCCTGATTGAGGCTGGAACAGGAGAGC 4413865 33 100.0 33 NNNNNNNNNN ................................. TGTCAACTCCTCGAAATATATTGCAGCATACTC 4413931 33 100.0 33 NNNNNNNNNN ................................. GAGGTTTGCATCGCTCAGGCATGCACCGCTTAA 4413997 33 100.0 34 NNNNNNNNNN ................................. CCAAGTTTTGCTTGTAGAGGCTCATTAAGATATC 4414064 33 100.0 36 NNNNNNNNNN ................................. GCTACAATGGTATCCGTTGTTTCGAAACATTACGGC 4414133 33 100.0 37 NNNNNNNNNN ................................. AAGCTATACTGGTTAGATCCATCTAAAGTTGAAAAAG 4414203 33 100.0 35 NNNNNNNNNN ................................. GGCGACTTCTAACCTATCTGTTAACGTTGCAGGTG 4414271 33 100.0 35 NNNNNNNNNN ................................. AAGGCCGACACAGGAGCTATGAAATGAGCATTACC 4414339 33 100.0 34 NNNNNNNNNN ................................. AAGGACCTGCTGCTGCCTCACCTGGCGCAACAGG 4414406 33 100.0 35 NNNNNNNNNN ................................. TACTTCAATGGATTCTTCGAAAGCGCTTTTCAGTT 4414474 33 100.0 33 NNNNNNNNNN ................................. CCTCGACAATGTTGCTCATAACGTTTGCAAAAT 4414540 33 100.0 34 NNNNNNNNNN ................................. GGTTTGCATCTTCAATTGTTGCATTTGCTGTTGC 4414607 33 100.0 35 NNNNNNNNNN ................................. AGTGGCTGCGTTGGTGTGGTAAATGGCTACGGTCC 4414675 33 100.0 33 NNNNNNNNNN ................................. AACAAATCACGCACAAAACGTTGCACCTCGGAT 4414741 33 100.0 34 NNNNNNNNNN ................................. GTTGGTTGAACCATCCACGTGGGCCGCTCGCACC 4414808 33 100.0 35 NNNNNNNNNN ................................. CCCTGCATCCTCAACCGGTGCAGGTTCGACAATAA 4414876 33 100.0 35 NNNNNNNNNN ................................. CCATCCCCTATCTATATCTCGCGTGCTCATCGTGT 4414944 33 100.0 34 NNNNNNNNNN ................................. TGCCAACAAGAAAAAACCATCTTCTAGCAATATA 4415011 33 100.0 35 NNNNNNNNNN ................................. CATGCTTTCGATGATCCTGCCAGCATCATCGATGC 4415079 33 100.0 33 NNNNNNNNNN ................................. TTCGGTTATTGGATCTTCCGATCCAACAGCACG 4415145 33 100.0 35 NNNNNNNNNN ................................. GTATTAAGGGCGAGATAATCGCAGAAAAATACCAA 4415213 33 100.0 34 NNNNNNNNNN ................................. TACCGTTGGGTGAGGTTTTGTTAGCTATCGATAC 4415280 33 100.0 36 NNNNNNNNNN ................................. GAGGTTCTAGCATTGCCAGCGAAACGGCAACAGCGC 4415349 33 100.0 34 NNNNNNNNNN ................................. TCACCCGGCAAGCCTGTTGCTGCTTATGCAATGG 4415416 33 100.0 36 NNNNNNNNNN ................................. GCCGAGGTAGTTGTGACTACAAAATCAAAACGACCC 4415485 33 100.0 34 NNNNNNNNNN ................................. AACCGTTGTAAAAGCAAACATCTTGTAAGCAATA 4415552 33 100.0 33 NNNNNNNNNN ................................. ATGGTCAGTCTCCTAGTGCGTTTTGTCTGTTTT 4415618 33 100.0 34 NNNNNNNNNN ................................. TTTATGCCTGGCAGCATAGTGCTTATCACGTAGC 4415685 33 100.0 33 NNNNNNNNNN ................................. GTGATGAATACTCAGACCGTGAGGATTGGAGCC 4415751 33 100.0 34 NNNNNNNNNN ................................. ATTAACATCTTTAACCGTGTCTAAAGATGTAGTG 4415818 33 100.0 34 NNNNNNNNNN ................................. GTTCGCTACGTTTTTTAAACTTTCCGTCTCTGTC 4415885 33 100.0 33 NNNNNNNNNN ................................. CCTATCCCGATTTTGGCCTTTTTTTAGCGTTTT 4415951 33 100.0 34 NNNNNNNNNN ................................. AGCACCACAACCCCGCTTTTAAACGCCAAACCTG 4416018 33 100.0 34 NNNNNNNNNN ................................. CACATCCACAGCCAAATCAAAGCGCCCTACAGAC 4416085 33 100.0 34 NNNNNNNNNN ................................. CCATTGCCATTCCACTGGACAACCCGTTGACCAA 4416152 33 100.0 36 NNNNNNNNNN ................................. TACCGAAGATTTAGTTATGCCGTTATAGCAAGACTT 4416221 33 100.0 34 NNNNNNNNNN ................................. AGGTGGCTAGAGACACAAGGCCGACCAAGAGCCG 4416288 33 100.0 34 NNNNNNNNNN ................................. CCCACATAGAGTTTCGGTTAGCCTGTTGCTGATT 4416355 33 100.0 34 NNNNNNNNNN ................................. CATTGTATCAACAGGCACCACAGTTAGGGCCTTT 4416422 33 100.0 34 NNNNNNNNNN ................................. TTTTGGTGGAACTGGCGGTGTAAAAGGGCCAGTT 4416489 33 100.0 34 NNNNNNNNNN ................................. AAGGTCTGCTTAAGGATTAATGCCATGACTGCTT 4416556 33 100.0 34 NNNNNNNNNN ................................. ATTTGTGCAATAAAGCACATCGGGAGCGGTGCAT 4416623 33 100.0 1 NNNNNNNNNN A................A...AGAA.C.....T NNNNNNNNNN ========== ====== ====== ====== ========== ================================= 138 33 34 GTCGCCCCCTCCCACGGGGGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [5,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.60,-7.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [55.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [182,255] Score: 0/0.18 # # Final direction: F [4.91,0.27 Confidence: HIGH] >NC_008577 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 4626121 28 100.0 32 NNNNNNNNNN .GG..TT.......T......G...AT. TCAAAGTCAACTTGTAAATGACGATTTTCACG 4626181 28 100.0 32 NNNNNNNNNN ............................ AGTTTGGGGCTGAGTTTGCCATTTTCCTAAAT 4626241 28 100.0 32 NNNNNNNNNN ............................ GATGAAGCAGACCACCTCGATTACCCCACGCT 4626301 28 100.0 32 NNNNNNNNNN ............................ ACTATTTATCAAGACCTTCTTTAAAATCAAAC 4626361 28 100.0 32 NNNNNNNNNN ............................ AGTTTGGGGCTGAGTTTGCCATTTTCCTAAAC 4626421 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 6 28 32 ATTTTCAGCTGCCTATTCGGCAGGTCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [421,132] Score: 0.18/0.18 # # Final direction: R [0.18,1.42 Confidence: HIGH] >NC_008593 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1853854 30 86.7 36 TTAATAAATC --..G.........A............... CAAATTTGAAAAAACTTGAAACTTTTTTAAATATAT 1853920 30 100.0 35 TTAAATATAT .............................. TCTCACTCTCAAGCAAATAAATTATTTAATTATGC 1853985 30 100.0 35 TTAATTATGC .............................. CAATTATGTCCACACTCAATATTATAAAGTCGATT 1854050 30 100.0 36 AAAGTCGATT .............................. AATATTAAAGAAATTTAAAAAGAAGAAACATTTATG 1854116 30 100.0 37 AACATTTATG .............................. AAAGATTGTCGAAAAACTAAAAGCGAACACTTGTAAA 1854183 30 100.0 36 CACTTGTAAA .............................. AATTGGTGTTGAGCACCAATCTTTAGTTGTTATAGA 1854249 30 100.0 36 TTGTTATAGA .............................. ATTGCCTCAATTACTTCGGGGGTTGCTAAATAAGTA 1854315 30 100.0 35 TAAATAAGTA .............................. CTGTGTCAATTCTAAAATCTGATTTATCCATTCTT 1854380 30 100.0 35 ATCCATTCTT .............................. ACAAACTAGACAATATAAACAAGAAATTTCAAGTA 1854445 30 100.0 35 ATTTCAAGTA .............................. TATTGGTGGGATAGTGAAGATGCATGTATTAGTGC 1854510 30 100.0 34 GTATTAGTGC .............................. AATTCAAAATATTAGACCTGTAAATTTCTTTTCC 1854574 30 100.0 36 TTTCTTTTCC .............................. TGTAACAAAATTATATTTTTTTCTTCCTGGGAGTTA 1854640 30 100.0 36 CTGGGAGTTA .............................. AATGGCTACTAATAAAAAATTTAACTTTACAATCGA 1854706 30 100.0 36 TTACAATCGA .............................. TAATTTTACGATTGATGATGATAAGAGGTCTATAAT 1854772 30 100.0 36 GGTCTATAAT .............................. TTCTATTTTTTCTTTTACCTCGTTAGGTGTTTCGTC 1854838 30 100.0 34 GTGTTTCGTC .............................. AAGATAAAACCGCAAGTAGGTGATTATGTAATAT 1854902 30 100.0 37 TATGTAATAT .............................. TTTCCAATGTTAAAGAGGAAGGAGGACAGAAGATGGG 1854969 30 100.0 38 AGAAGATGGG .............................. GAAGTCCAGTAGACAAATGGGGGTGTACTGTGTGACGT 1855037 30 100.0 35 TGTGTGACGT .............................. AAATATGTTCCAATCGAAATTGGAACAGATGAAGT 1855102 30 100.0 34 CAGATGAAGT .............................. GGAAATTAAGTAACGAAGAAAGTGTCCAAATAGC 1855166 30 100.0 TCCAAATAGC .............................. TACAGTAAAA ========== ====== ====== ====== ========== ============================== 21 30 35 ATTTAAATACATCTCATGTTAATGTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [80.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [254,184] Score: 0/0.18 # # Final direction: R [0.27,0.78 Confidence: MEDIUM] >NC_008578 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2208609 36 100.0 28 NNNNNNNNNN TG.TTAA............................. GCGTACCGCGGAAACAGCTATCGCGCAT 2208673 36 100.0 28 NNNNNNNNNN .................................... CAGGCTTGACGGGCTCTGCTCGCGGGAA 2208737 36 100.0 28 NNNNNNNNNN .................................... AAAGCACGGCGGGCTGCCGGCCTCACCC 2208801 36 100.0 28 NNNNNNNNNN .................................... CGCGTCAGCCGCGGCACGATTACCGTAC 2208865 36 100.0 27 NNNNNNNNNN .................................... ATCTGGCCGAGTGCTCGTGGTCACGAC 2208928 36 100.0 28 NNNNNNNNNN .................................... CGACCAACGGAAGATCGCCGATATGATA 2208992 36 100.0 28 NNNNNNNNNN .................................... CAATCATCCCACGGCTGCGCACCCCACG 2209056 36 100.0 28 NNNNNNNNNN .................................... ATCGGCTTGGTGCGGACCGGCGGGTTTT 2209120 36 100.0 28 NNNNNNNNNN .................................... GCAGATTGATGCTAAAGCTGGGGAGATT 2209184 36 100.0 28 NNNNNNNNNN .................................... GCAGATTGATGCTAAAGCTGGGGAGATT 2209248 36 100.0 28 NNNNNNNNNN .................................... CTCCGGGTGGTATTCCCGCCGGGACCTG 2209312 36 100.0 28 NNNNNNNNNN .................................... CCAACCGCGTACATGGTCGAGGTTTGCA 2209376 36 100.0 28 NNNNNNNNNN .................................... GAAACTGTGAAAAACGGTGCCTTTGCCA 2209440 36 100.0 28 NNNNNNNNNN .................................... TCCGCACCGTCGACTCGTACGCCTGCAG 2209504 36 100.0 28 NNNNNNNNNN .................................... AGATCCTTGAGTGCGTGCCCGGTGCCGC 2209568 36 100.0 28 NNNNNNNNNN .................................... CGCCCGCGCCGCCTGAGCTGGTCGAATT 2209632 36 100.0 28 NNNNNNNNNN .................................... TGCTCGAGCACCGGTAGCAGCTGTGTCT 2209696 36 100.0 28 NNNNNNNNNN .................................... GATCCCACACCCAGCACCAGAACGCGCG 2209760 36 100.0 29 NNNNNNNNNN .................................... CCACCCGGCCACCGTAGCGCGCGGCGGAG 2209825 36 100.0 28 NNNNNNNNNN .................................... TCCATGTCAATTCAGTGGTGGCCGACCT 2209889 36 100.0 28 NNNNNNNNNN .................................... CCGACCGAGCGAAACGCCCGGTGCGAGA 2209953 36 100.0 28 NNNNNNNNNN .................................... TTGATGGCGTGCGATATTCCCCGGTGCG 2210017 36 100.0 28 NNNNNNNNNN .................................... AGCGGGACTTGAACCCGCGACCAGCGGA 2210081 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 24 36 28 GCTGGGGAGCCTGTCTCAATCCCCCGGCTAAAATGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [7,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.60,-4.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [515,49] Score: 0.18/0.18 # # Final direction: R [0.18,0.78 Confidence: MEDIUM] >NC_008593 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1867121 30 96.7 35 TCATGAATTA .......C...................... AAGCTTGTATTACCAAACTTAAGTTTTTGAACTAT 1867186 30 100.0 36 TTTGAACTAT .............................. ATTTTTTAATAATTTGTATCTATTGTTTATATTTAC 1867252 30 100.0 34 TTATATTTAC .............................. TATATTTGGTGTAGGTACAAATGTACCGATTTGT 1867316 30 100.0 36 ACCGATTTGT .............................. AGTATTAGAAAAGGATAAAAACGGGGATAATGACGA 1867382 30 100.0 37 ATAATGACGA .............................. AGGTATTCTTTGTCCTGTACGCTTGTCATATTTCCAC 1867449 30 100.0 36 ATATTTCCAC .............................. AGCGATATGGTATATTAAAAGGGAACTAAAGAATAT 1867515 30 100.0 35 TAAAGAATAT .............................. GAATTGGCACATTATCTCCATTATTTAAATTACAA 1867580 30 100.0 36 TAAATTACAA .............................. AGGCATTTTTTTCATGGAAAAGATAGATTTTGAAAA 1867646 30 100.0 36 ATTTTGAAAA .............................. ACCATACCCTATAACAGAATATAAAATAGCTTGTTG 1867712 30 100.0 36 TAGCTTGTTG .............................. TGTGTGTGGACACATAGAAACTGGACAAGATTTTTT 1867778 30 100.0 35 AAGATTTTTT .............................. CTAAACCCTATATCGTGCTTAAAGCCTTGCGTATC 1867843 30 100.0 34 CTTGCGTATC .............................. AGATTACTGGCCTCTTTAACGAAAATTGACGGAA 1867907 30 100.0 34 ATTGACGGAA .............................. AAGAAACACAGGAAGATAATGCGATAGATTATTC 1867971 30 100.0 36 TAGATTATTC .............................. TCCCATTGCTAATATTGCAATGGGAATTATAACGGA 1868037 30 100.0 35 TTATAACGGA .............................. CAAAATGGCAAGGTACTATACGCTACGGTAACAGA 1868102 30 100.0 36 CGGTAACAGA .............................. TAAATAGTGCGTTGGAAAATGTTCAGCTCGAATTTA 1868168 30 100.0 36 CTCGAATTTA .............................. TTCTTTTAAAGGTGCATTACTTCCGTTAACCGAACG 1868234 30 100.0 35 TAACCGAACG .............................. TGCGACATGAATTTTAAACAGCTCTCTTGGCTATC 1868299 30 100.0 34 CTTGGCTATC .............................. GGGAACAAGAGGCTTTTAACGATATGGTATGGAA 1868363 30 100.0 36 TGGTATGGAA .............................. AGCTATAGGTCTTGGAGATATGAAAGACAACTCTAT 1868429 30 100.0 37 ACAACTCTAT .............................. GTTGAACGTTTGGAACAACCGCAAATGACTTTTAGTT 1868496 30 100.0 34 ACTTTTAGTT .............................. CAGAAGGTCCAGGAGGTGTTCCTAGTGGTTTAAG 1868560 30 100.0 34 GTGGTTTAAG .............................. GTCTAGAAGGTGCAGAATATTTTAAAGAGTTATC 1868624 30 100.0 36 AAGAGTTATC .............................. ACTAATAGAGGGTACTCTCCACATATTTTATTATTA 1868690 30 100.0 36 TTTATTATTA .............................. TCTAACATATCTACACGCTCTACAGTTTCCATTTTC 1868756 30 100.0 36 TTCCATTTTC .............................. CTCTTAGAGGATAACTTAAGTTTAGCGAATTTTGCT 1868822 30 100.0 34 GAATTTTGCT .............................. CCGAGAAACCTGTCGAAGATGGTACAAGCATGAT 1868886 30 100.0 34 CAAGCATGAT .............................. ACGGTGACGGAATTATTTTAAACGCCGGTTACAA 1868950 30 100.0 36 CCGGTTACAA .............................. AATTGTATATCTCCTTAACCCTTGCGTTGCCGATTC 1869016 30 100.0 37 TTGCCGATTC .............................. TTTTTTCTTTTTCTTTTACCTTGTTAGGTGTTTCGTC 1869083 30 100.0 37 GTGTTTCGTC .............................. GGCATTAAAAATATCTTCAAAGGCATATGGGAAAGCA 1869150 30 100.0 35 TGGGAAAGCA .............................. GGTTATCCAAAAATCTATGCATTGGATAGTCAAAA 1869215 30 100.0 36 ATAGTCAAAA .............................. TACAAACACAAGATGTAGAAGGGCTACAAAAATGGT 1869281 30 100.0 37 CAAAAATGGT .............................. TTAAAGGATTTTGAGGCGGAATCTGTGGCTTTCAAAA 1869348 30 100.0 36 GCTTTCAAAA .............................. CATAATCCACCGCATTATCTTCCTGTATCTCTTTTT 1869414 30 100.0 36 ATCTCTTTTT .............................. TAGGTATCACCCGCATTTACATTGTGCGTTTGTGTT 1869480 30 100.0 35 CGTTTGTGTT .............................. TGATTCGTTCTTTTATTTCTCAAGAACGTAAAGTG 1869545 30 100.0 36 ACGTAAAGTG .............................. ATGTAGCGGATTATTTCTTATAATTGGAAAAACTAT 1869611 30 100.0 34 GAAAAACTAT .............................. CTTCTGTTTTTACTATTCTTGCTCGTGTTAAGAG 1869675 30 100.0 36 GTGTTAAGAG .............................. AGGCAAACAGGCTTTTAAGTGGACTGCTAAAGGCTT 1869741 30 100.0 36 CTAAAGGCTT .............................. CCTAAGTTTTCTACTAATGGTAAGGTTGTAACTTTA 1869807 30 100.0 36 TGTAACTTTA .............................. TTTTTTCTGTCCTATTACAGAAATTTTGGCTATTGG 1869873 30 100.0 36 TGGCTATTGG .............................. TATAATGACTAATAGGAAGTTTAATTTTACGATTGA 1869939 30 100.0 35 TTACGATTGA .............................. TTACTTGGAAGATGGTGAGTATAGTGTGGAGGATA 1870004 30 100.0 35 GTGGAGGATA .............................. ACATATTCAATCCCACAAAATCCCGACGCAATTCC 1870069 30 100.0 36 ACGCAATTCC .............................. AAGGTACACAAGCAAAGAAACCTAAAAAGGCGAAAA 1870135 30 100.0 38 AAGGCGAAAA .............................. TTCTTTGTTTTCGTAGTTTCTGGTGGCTATTCTTCCAC 1870203 30 100.0 37 ATTCTTCCAC .............................. TATAATTAATATATAAAGAAAACAGGAGGTAACAAAA 1870270 30 100.0 36 GGTAACAAAA .............................. ACAAAATGGAAAGGTGCTATACGCTACGGTAACAGA 1870336 30 100.0 36 CGGTAACAGA .............................. CCCTAGTGAGGAAGATGTTGCAAAAGCATTAGAGGT 1870402 30 100.0 CATTAGAGGT .............................. TACAGTAAAA ========== ====== ====== ====== ========== ============================== 51 30 35 ATTTAAATACATCTCATGTTAATGTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [50,285] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_008593 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1864659 30 93.3 35 CGAATATTAA ..........G..T................ TGAATTTACAATAGAACAAATAAAGTTTGTAGCTT 1864724 30 100.0 36 TTTGTAGCTT .............................. TTTAATTAAAAAAGATTATTCAAATATTTATAAATC 1864790 30 100.0 36 TTTATAAATC .............................. AAAGCCCCGTTATAACTTGAATAAGCGTTATTAAAG 1864856 30 100.0 36 GTTATTAAAG .............................. TTTCAGGCGGAAACATGAACAAAACAGTAAACATAA 1864922 30 100.0 37 GTAAACATAA .............................. TTGCAATTCTTTATTAGTTAAAGCAATTCTTTTCGCC 1864989 30 100.0 35 TCTTTTCGCC .............................. ACAAACCTCACCGATATATTATAGTGGTCAGATGA 1865054 30 100.0 36 GGTCAGATGA .............................. AAAACAAGCTGGTAAAAAGAAGAATGATAGTATAAG 1865120 30 100.0 36 ATAGTATAAG .............................. ATTTATGTCAACAACCTGTCCTATTAAAGCGTCCAA 1865186 30 100.0 36 AAGCGTCCAA .............................. AATTGCTCTTCTTTACTTTGAACCTTTTTATCTTTG 1865252 30 100.0 35 TTTATCTTTG .............................. CTTAATAAATTCAAGGAAATCATTATTTCCTTTAC 1865317 30 100.0 34 TTTCCTTTAC .............................. GTGAAGAAACAACAAATTTAACTGCAGCTGAAAA 1865381 30 100.0 37 CAGCTGAAAA .............................. TTGCAAATTGTATAAGCAAGTGTGAATTTCTTACTTT 1865448 30 100.0 36 TTCTTACTTT .............................. ATTACAAGAAATGGTTAAGGAAATAAAAGAAAATAT 1865514 30 100.0 36 AAGAAAATAT .............................. TTTAATTTTTAAAATATTTTTATCTTTACAATTCTA 1865580 30 100.0 35 TACAATTCTA .............................. CAAAATAATAAAGCATTACTAAGTACAACAATTAG 1865645 30 100.0 36 CAACAATTAG .............................. TTTCTACTCAAATGGGATTCGACAAATCAGAATCGG 1865711 30 100.0 36 TCAGAATCGG .............................. CGAAACTTTTCCAAATGGAAATTACAAGTATAGAGA 1865777 30 100.0 35 AGTATAGAGA .............................. ACATTTAGCAAGAAAGATGATATAACTGTAAAAGT 1865842 30 100.0 35 CTGTAAAAGT .............................. GAAATTGCCAACACTAAACTATTCTATTCTACGGA 1865907 30 100.0 34 ATTCTACGGA .............................. AATCTAACGATTAGTGAGATAGACAAAATGAGCG 1865971 30 100.0 35 AAAATGAGCG .............................. TTAGAATTTTTTACTCAGCATAGGCATTTAGGCTT 1866036 30 100.0 35 ATTTAGGCTT .............................. GTTGATAATAATTCTTATAATAGGAATTTAATTTT 1866101 30 100.0 38 ATTTAATTTT .............................. TGACCGACTGATTCTTCATATACTTCATAATCACCATG 1866169 30 100.0 35 AATCACCATG .............................. CGTTAAATGCTCCTGTTTTGTCGTTTGTAGCTTTG 1866234 30 100.0 TGTAGCTTTG .............................. CATAGTAAAA ========== ====== ====== ====== ========== ============================== 25 30 35 ATTTAAATACATCCCATGTTATTGTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:73.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [80.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [531,224] Score: 0.18/0.18 # # Final direction: F [0.45,0.41 Confidence: LOW] >NC_008599 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 655350 30 100.0 34 GTTTATTATA .............................. TCATTTTTGTCATCAGGACCAGGAGAACTGACAC 655414 30 100.0 36 GAACTGACAC .............................. TATAAAGGGACCTACGAACTAAGCTAGAACCCTTTT 655480 30 100.0 36 GAACCCTTTT .............................. TCGAATAAGTTGTTAAGATTATGCAACTTTTTTGTA 655546 30 100.0 36 CTTTTTTGTA .............................. TGAGCATATTCTGGATAAGATAAAAGTGCGTGAATA 655612 30 100.0 36 TGCGTGAATA .............................. AGCATTTTAACGATAGAATCAAACTTTTTAGCTTTT 655678 30 100.0 36 TTTAGCTTTT .............................. GTGTAAGCAAGATGGCAAGAGACTATCTCCTGTTGT 655744 30 96.7 35 CTCCTGTTGT ............G................. CGGGGAGCAACGTTAGCAATCTCATTTCCGTCCAT 655809 30 100.0 36 TTCCGTCCAT .............................. TGGGGATTCGATGAAATTTTTAACTATATAGCATTC 655875 30 100.0 36 TATAGCATTC .............................. TTTACCAATTTCTATTACTACCGCGTTCACCGGTAT 655941 30 100.0 36 TCACCGGTAT .............................. TGTATGTTGGTAGCTTTTATGGTTACTTTACATAAC 656007 30 100.0 36 TTTACATAAC .............................. TAAACTATTTCGTTATCCTGGTTGATACCGCTTAAA 656073 30 100.0 37 ACCGCTTAAA .............................. ATTAAAGCCGAATTACTCCCATTTTTTTTTGACTTGG 656140 30 100.0 36 TTTGACTTGG .............................. GAATTTAATCGGAGTTTACAGGCCGGATCTAATTTC 656206 30 100.0 36 ATCTAATTTC .............................. TCACCAAAAAAACCAGGAATTAAATAAAAAGTAAAA 656272 30 100.0 36 AAAAGTAAAA .............................. GAATTTAATCGGAGTTTACAGGCCGGATCTAATTTC 656338 30 100.0 36 ATCTAATTTC .............................. TAGCTAGAAAATGTAAAATGCTCCCATCCTTCTACC 656404 30 100.0 35 TCCTTCTACC .............................. AATCCAACTTAACAAAAATGTTATATAAAATCACC 656469 30 100.0 36 TAAAATCACC .............................. TAAGCAAGGCTTATAAGCTCTTTACAATGCATTTTT 656535 30 100.0 36 ATGCATTTTT .............................. AGAACTGTTTTAACCTCACTTCCATCAATCTCTTTT 656601 30 96.7 36 AATCTCTTTT .........................T.... CAGTATGCCATTTGATTCTAGTTCGCCTATAGCTCT 656667 30 100.0 36 CTATAGCTCT .............................. CATCCTCCTTTTAATTTATTACATTTAAACAATTTA 656733 30 100.0 AAACAATTTA .............................. AAGAGCAAAC ========== ====== ====== ====== ========== ============================== 22 30 35 GTTTGCTAATGACAATGTTTGTGTTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [86.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [556,12] Score: 0.18/0.18 # # Final direction: F [0.45,0 Confidence: MEDIUM] >NC_008595 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =========================== ====== 279270 27 100.0 35 NNNNNNNNNN ...........T............... GGTCGGTCACTGCGGTGGTGTCCTGTGCATGCTCC 279332 27 100.0 34 NNNNNNNNNN ........................... TCCCAGGCGGACGCAGTGCCAGGGATGGCGAGTA 279393 27 100.0 35 NNNNNNNNNN ........................... CGAGGCCGTCGCGGAGGCCTTGACCGACCCCGATA 279455 27 100.0 37 NNNNNNNNNN ........................... GCGCACCTCAGCTGCTGTGCTGCGTGAGCGCGTCATA 279519 27 100.0 35 NNNNNNNNNN ........................... CCTGCACCAGTCGATCCACTGCGACGTGCGCAGCA 279581 27 100.0 35 NNNNNNNNNN ........................... CATCCCAGGTCAGGAAGTCTGCTCCCCGCGTAAGA 279643 27 100.0 35 NNNNNNNNNN ........................... GGGCCTGTTGCTCATCGGCCCGCCGCGCTCGGGCA 279705 27 100.0 34 NNNNNNNNNN ........................... GCCGATACCGGGCTTGGCATCCGTGCCGTACTGC 279766 27 100.0 34 NNNNNNNNNN ........................C.. CGTGCCCGGTGGAGGAACCACCTCTCCCCCCACA 279827 27 100.0 34 NNNNNNNNNN ........................... GGCCGCAGAGGAGGCCGTCACCGCGGCGAAGACC 279888 27 100.0 36 NNNNNNNNNN ........................... CCTCCGATCCAGGTACCGCGTCCGGAAGATGTGGCC 279951 27 100.0 37 NNNNNNNNNN ...........T............C.. CCCCCGTCTGCAGCGCAACGGTTCCTACTGCACCTCC 280015 27 100.0 1 NNNNNNNNNN ........................... NNNNNNNNNN ========== ====== ====== ====== ========== =========================== 13 27 35 TGCTCCCCGCGCAAGCGGGGATGAACC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-10.10,-9.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [33.3-31.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [92,265] Score: 0.18/0.18 # # Final direction: F [1.15,0.18 Confidence: HIGH] >NC_008599 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 674442 30 100.0 36 NNNNNNNNNN .............................. TCGTTAATATTATTTTTGTTGCAATGTTTGCATTTT 674508 30 100.0 36 NNNNNNNNNN .............................. TCTTCTAAAGCAGAAACTAAAAAGCCATATCCGATG 674574 30 100.0 36 NNNNNNNNNN .............................. AGAGAAGCAAGGCTTAAAAATGTTCGCAGATGGCGG 674640 30 100.0 34 NNNNNNNNNN .............................. TTTTGTCATCAGAACCAGGACCAGGAGAACCTGA 674704 30 100.0 37 NNNNNNNNNN .............................. TGATGTATTGACTTTGAAGATAGCAATCATAGGCAAA 674771 30 100.0 36 NNNNNNNNNN .............................. GGCGCAGCCGTAGAATTAGGGCTTAGTTTCGGCAAT 674837 30 100.0 36 NNNNNNNNNN .............................. CTTTTTTCAAGCTCGATTTTAATATCCCATTGCGCG 674903 30 100.0 36 NNNNNNNNNN .............................. TTTTTACCGTTTTGAAAATCAACAAAAAGTTCTATA 674969 30 100.0 36 NNNNNNNNNN .............................. TCATTAAAACACGATATTGTGATCCGCCTTTCATAT 675035 30 100.0 37 NNNNNNNNNN .............................. CCTTTATAATCTATACTAAAACCATTTAATATAATAT 675102 30 100.0 36 NNNNNNNNNN .............................. GCATATTAACAAGCTAAATGACTTTCTTAAAAGTAA 675168 30 100.0 36 NNNNNNNNNN .............................. GCATATTAACAAGCTAAATGACTTTCTTAAAAGTAA 675234 30 100.0 37 NNNNNNNNNN .............................. GGGGATATGGTAAAATCTGCAGTTAAATCTAAGTTAT 675301 30 100.0 36 NNNNNNNNNN .............................. GATAATCAAAATTTTACAAAGCAAGTTCTTGTACAC 675367 30 100.0 36 NNNNNNNNNN .............................. CCATTTAGCATATCATATACTTGATCTGCCATTTAT 675433 30 100.0 36 NNNNNNNNNN .............................. ACTTTTAGGTGTTGCAAGGAGATAGTAAGAGATGCA 675499 30 100.0 36 NNNNNNNNNN .............................. TCTGATAAAATGTATTTGGATCAATACCTAAAGCTC 675565 30 100.0 36 NNNNNNNNNN .............................. TCGTAATCTTCTTCCATAATTTTAAAGTATAGATTA 675631 30 100.0 35 NNNNNNNNNN .............................. TCGAATCCGTATGTGTTTACAACTTCTGAATCTTC 675696 30 100.0 36 NNNNNNNNNN .............................. TTGAAATACATATCTGAGTAAAATGGAGCCCACTCT 675762 30 100.0 36 NNNNNNNNNN .............................. TTGAAATACATATCTGAGTAAAATGGAGCCCACTCT 675828 30 100.0 35 NNNNNNNNNN .............................. TCTTTGCTTTTTGTCTTTGCTATTTTACTTTTAAG 675893 30 100.0 36 NNNNNNNNNN .............................. TCGAAATACAAGCTCGCGCAAAATGGAATCCATTCT 675959 30 100.0 36 NNNNNNNNNN .............................. TTAAATCTCCTTATCGCTTATTATATTTATTAATTT 676025 30 100.0 37 NNNNNNNNNN .............................. TTATCTATGATTTGGACGTTTGTGAGCGCGGAGCTTA 676092 30 100.0 36 NNNNNNNNNN .............................. ATGGAATATTTTTGTTAAACGCATTCATACAAAATT 676158 30 100.0 36 NNNNNNNNNN .............................. GGCGGTATTGGAAGTATAAAAATTAATAACGTTGTT 676224 30 100.0 1 NNNNNNNNNN ..........TTTT.ACACAAAA...CCTG NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 28 30 36 GTTTGCTAATGACAATGTTTGTGTTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [86.7-81.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [345,68] Score: 0.18/0.18 # # Final direction: F [0.59,0 Confidence: HIGH] >NC_008601 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1471086 36 100.0 26 CTTTTAATCT .................................... AAAAAAATGACCTTCATAAATCGCTA 1471148 36 100.0 27 TAAATCGCTA .................................... CGGCTACTAATACAAAAGGCTCTAGAC 1471211 36 100.0 30 GGCTCTAGAC .................................... TGAATTATCTGAAGGCACAGGAATAGTAGC 1471277 36 100.0 31 GAATAGTAGC .................................... TTTTAACAGTGGCCTTATTAAATGACTTCTC 1471344 36 100.0 ATGACTTCTC .................................... CCGTTTTTG ========== ====== ====== ====== ========== ==================================== 5 36 28 ATCTACAACAGTAGAAATTATTTAAAGTTCTTAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [389,141] Score: 0.18/0.18 # # Final direction: F [0.18,0 Confidence: MEDIUM] >NC_008607 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 189566 36 100.0 38 AGGGGCTGTC .................................... GCAATCATGGCCACCTCCAGCTTCCACAGATTTGCTTT 189640 36 100.0 37 GATTTGCTTT .................................... GTGTCATTGTTGCCTCCCACTTCCGCAGATTCAACAT 189713 36 100.0 39 GATTCAACAT .................................... AATAAAGACAGGGGGAGTCATGGAACCACTTATTGCCGA 189788 36 100.0 TTATTGCCGA .................................... TGCCTATCAA ========== ====== ====== ====== ========== ==================================== 4 36 38 GTCTCCACTACAAAGCGGCGGAGCACGCATGTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [10,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-4.40,-4.20] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [12,167] Score: 0.18/0.18 # # Final direction: R [0.37,0.45 Confidence: LOW] >NC_008601 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 817260 37 100.0 34 TGTTTTGGCT ..................................... CAAGATTGGTATATATCAACTGCTAATCACTCGC 817331 37 100.0 35 AATCACTCGC ..................................... GGTAAAACCAAAAACCAAAAGTTAAGATATCTCTT 817403 37 100.0 34 GATATCTCTT ..................................... TATGCGGCTTGTGGTTGTGTCATTGCGAAGACTG 817474 37 100.0 36 GCGAAGACTG ..................................... TTAAGCGGATCAATTTCGATTACATCTTCACCAGAT 817547 37 100.0 34 TTCACCAGAT ..................................... TTTGTCAAATATTGGTCGAGTTATCTTAAATAGT 817618 37 100.0 34 CTTAAATAGT ..................................... ACTCCTATATGACCATACAAAACCTGCCCATTAC 817689 37 100.0 37 TGCCCATTAC ..................................... TTATTTGCCAACACTCAAAAGATAGGTAACCCTATAG 817763 37 100.0 36 AACCCTATAG ..................................... TAGTTTTTTATTATCTGTGCTGTTTTCTGTCATTGC 817836 37 100.0 36 CTGTCATTGC ..................................... GTATATATCAGTAGTTTAAAAGCATTGGCTATTACT 817909 37 100.0 34 GGCTATTACT ..................................... GTTAATAATGCTAAAGAACCAGCTGAATGTGTAA 817980 37 100.0 36 GAATGTGTAA ..................................... ATTCTTGAATTAAGTGTTGCTGCTGAGGATTAGGCA 818053 37 100.0 36 GGATTAGGCA ..................................... ATATAAATTTGGATAATTTTAAGGTATTAAATCCTT 818126 37 100.0 34 TTAAATCCTT ..................................... ATCACACTATAAAAGTAATCAAGCTTGCCATTGT 818197 37 100.0 TTGCCATTGT ..................................... TTAATTAATT ========== ====== ====== ====== ========== ===================================== 14 37 35 CTAACAGTAGTTTACCAAATAATTCAGCAACTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-3.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [361,708] Score: 0/0.18 # # Final direction: R [0,0.64 Confidence: HIGH] >NC_008609 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2524542 29 100.0 32 NNNNNNNNNN ............................. AACAACGTCAATTCCTAGCCCGGCTGCAACAT 2524603 29 100.0 32 NNNNNNNNNN ............................. CCCCGGCTCAACCTGGGGAACCCTGGAAGCGA 2524664 29 100.0 32 NNNNNNNNNN ............................. AAACCTTTAACCAAAAGAAAGAAAGAAACCGC 2524725 29 100.0 32 NNNNNNNNNN ............................. CCTGGTCGCCTCGGTGCCAATTCCGGAAACGT 2524786 29 100.0 32 NNNNNNNNNN ............................. CTGCTGCGTATGCTGTCGCCATGTTTGCCATC 2524847 29 100.0 32 NNNNNNNNNN ............................. TATAATCCTAGCAATTTCTCCTTTAAATTTAC 2524908 29 100.0 32 NNNNNNNNNN ............................. GGAGGACGGTGCCTCGGCTAAGCCGTTGACCC 2524969 29 100.0 32 NNNNNNNNNN ............................. CTGACAGAAGAGTTCTCAACGAGAGAGGACAG 2525030 29 100.0 32 NNNNNNNNNN ............................. TCGCGAATCATCGCCATTGTAGGAGAATACTG 2525091 29 100.0 32 NNNNNNNNNN ............................. GTATGTGGCTATGGGATCGCCCGTAACATCCT 2525152 29 100.0 32 NNNNNNNNNN ............................. GCAAACGCCCATTTGATAGCCGCCGCACCTGA 2525213 29 100.0 32 NNNNNNNNNN ............................. GTTTGAAATCGCGCAAATCATGCCTGAAAGAC 2525274 29 100.0 32 NNNNNNNNNN ............................. TTCCAGCAACCGCTTGATCACGAAAACCTCAC 2525335 29 100.0 32 NNNNNNNNNN ............................. CTCTCCAGCATCCCCCGGACACACGCGGCGGA 2525396 29 100.0 32 NNNNNNNNNN ............................. CCACGGACACACCAGGAACTAAAAAATATTCG 2525457 29 100.0 32 NNNNNNNNNN TAC.......................... CCCCTGTATGGGGCGGGCGTAGTTTTCCAGCA 2525518 29 100.0 32 NNNNNNNNNN ............................. GGTGAGCGGTTGACCGATTTTCGGAGCACCCG 2525579 29 100.0 32 NNNNNNNNNN ............................. CCTTGCGGTCAATGGTTTCTACGTTGTTTGGT 2525640 29 100.0 32 NNNNNNNNNN ............................. TTCGCTATACCCGTGCCGAGCGCAACATCCAC 2525701 29 100.0 32 NNNNNNNNNN ............................. TCGGTCCAGAGATCGGTGCCGGTGAGGGTGAT 2525762 29 100.0 32 NNNNNNNNNN ............................. AGAAACGCGATCAGTCAACCCAACTAAAACAC 2525823 29 100.0 32 NNNNNNNNNN ............................. TCTGGTTCTTGCTTCATTCCATGATCAGGCGT 2525884 29 100.0 32 NNNNNNNNNN ............................. GTGTCCATCAGGTCGGCCAGGTCCTGACCCAG 2525945 29 100.0 32 NNNNNNNNNN ............................. ATGTCGTCCTTGGTGGTGTCGCCGTGGAAGAC 2526006 29 100.0 32 NNNNNNNNNN ............................. GTTACGTTGCGACAACGCCGACTATCAACAAT 2526067 29 100.0 32 NNNNNNNNNN ............................. TTCATGTTATATCGATTCGTTATATGGATTGG 2526128 29 100.0 32 NNNNNNNNNN ............................. TCTCAAGGCCAATGGCGCTGCCATCTCGCGTT 2526189 29 100.0 32 NNNNNNNNNN ............................. ATTTACTGACTGGTGCCGCTCTGTGGGCGGGA 2526250 29 100.0 32 NNNNNNNNNN ............................. TGTGTAGCAGACAGTAGGATATCAGGGATGGA 2526311 29 100.0 32 NNNNNNNNNN ............................. TTACATGAATACATCATTATTACCTACAGGCG 2526372 29 100.0 32 NNNNNNNNNN ............................. TTTGAACTGGTAGCCGCCATCGTCGCCGCCAA 2526433 29 100.0 32 NNNNNNNNNN ............................. AATGGTCCGATTTCGCCAACTCTGGATCGGTC 2526494 29 100.0 32 NNNNNNNNNN ............................. GCTCAACTTTTCGGGGACATGCAGGTGGGCAA 2526555 29 100.0 32 NNNNNNNNNN ............................. TAAAAACTGCCGTTGGGTTTTCCTTCCGAGTT 2526616 29 100.0 32 NNNNNNNNNN ............................. TGGTTACGTGTTACAAAGCCGATGTGTTTTTA 2526677 29 100.0 32 NNNNNNNNNN ............................. AGTACCGTATAAATAGCCCAAATAATAACACC 2526738 29 100.0 32 NNNNNNNNNN ............................. CCTTGAGCAGGTGTTCGGCCTCCATGATGTCC 2526799 29 100.0 32 NNNNNNNNNN G............................ GACCATCGCCGCGCGCCTGGGGGTAAAGCCGG 2526860 29 100.0 32 NNNNNNNNNN G............................ AGAGTAAGCCCGTATTTCAGACGTAGTGCTTT 2526921 29 100.0 32 NNNNNNNNNN ............................. GAACTTCCTGATGGTGGTCGGTTTCGTCTCCG 2526982 29 100.0 32 NNNNNNNNNN A............................ TCGATCTGTGGCGCTGTCTCCTGACCAATGGG 2527043 29 100.0 32 NNNNNNNNNN ............................. CCAGAGTAGGCCCACGAGGTGCGTTTTTGCTA 2527104 29 100.0 32 NNNNNNNNNN ............................. AGATACCCACCATTATAGGGAGTAGTCCATTG 2527165 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 44 29 32 CGGTTCATCCCCGCGCATGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [28.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [202,206] Score: 0/0.18 # # Final direction: F [0.78,0.27 Confidence: MEDIUM] >NC_008618 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================= ====== 1456091 33 97.0 34 GCTCCGGTCG ...........T..................... CCCTCTACTGGTAAGGAGACTGATTATGGTCGAT 1456158 33 97.0 35 TATGGTCGAT ..........................A...... CCGACCGCGAGGTAGTCGGATGATTGCATGGCGAT 1456226 33 100.0 35 GCATGGCGAT ................................. CACCGCGCCATGCAGTATTTCAGTACTACCCCGTT 1456294 33 97.0 35 CTACCCCGTT ............A.................... ATAGCGAGGCCGTCAGATACGAGCTTCCCAAACTC 1456362 33 97.0 34 TCCCAAACTC ........................A........ ACTCCAAAAACCACTGCATACACTGTTACACCTA 1456429 33 100.0 33 GTTACACCTA ................................. ATGGAAACCCCGCGCAATTCCGATAATTACGAT 1456495 33 97.0 34 TAATTACGAT .............................T... TTACCGTGACGGGCACCGCCACGTACGTCAACCC 1456562 33 97.0 35 ACGTCAACCC .............A................... ACCGGAGAGCGTCGGCAAATGGCGAAACTATTATT 1456630 33 100.0 34 AACTATTATT ................................. AATATCAGAGGCGCATGCCAAGCGCAACTCAGAT 1456697 33 100.0 33 CAACTCAGAT ................................. CTCTAGTGTCCTAAGTTATAGGCGAGACTTGTG 1456763 33 100.0 34 GAGACTTGTG ................................. GATTCTCTATGGTGATACTCATGATTCGTCCTTA 1456830 33 100.0 35 TTCGTCCTTA ................................. ATATCCTGCGTGACCAGCTCGTCACGCTGCGGCAG 1456898 33 100.0 34 GCTGCGGCAG ................................. TGCCCGTGACGCGAATCGCGTAGCCGGTCAAACC 1456965 33 100.0 35 CGGTCAAACC ................................. GCCTGGGCGTGATGGACGTGGGCGACTCGACCGTG 1457033 33 100.0 34 CTCGACCGTG ................................. GCGTGGAAGCAGCTTTTCGTCAGCTATGGCGCAA 1457100 33 100.0 34 TATGGCGCAA ................................. CGTATCCTCCCTGATCGTCCGCGGCCAGGTCGGA 1457167 33 97.0 34 CCAGGTCGGA .............T................... GGCCACCGTCATTCGGATATGCGGCAGGCTTGGA 1457234 33 100.0 34 CAGGCTTGGA ................................. CATTGAGAGCGTGGAGTCGCGGGAAACTCACGAT 1457301 33 97.0 34 AACTCACGAT ....................C............ CTGGCGTCCATTGACGATGGAACAGTCCGAAGCG 1457368 33 100.0 33 GTCCGAAGCG ................................. TTCGGGTTCCGGGGGAGTGTGGCCGGGAAGCAC 1457434 33 100.0 34 CGGGAAGCAC ................................. ACGCGACTAAGACTGCCCACCCACCATTAAAGGA 1457501 33 100.0 34 CATTAAAGGA ................................. GTCATCGATCATCATGCCGTGGCGAACTTCACCG 1457568 33 100.0 33 AACTTCACCG ................................. CGGGTTCAGCTGCGCCTTGGTCAGGTCGGCGCT 1457634 33 100.0 37 GGTCGGCGCT ................................. GTTTCGGGAAATGCAGCCGCACATGACGCAATAAGCA 1457704 33 100.0 35 GCAATAAGCA ................................. GCGTATTGCGGGCGAATCATGTCGCCATGCTCGGC 1457772 33 100.0 34 CATGCTCGGC ................................. GCAGAGTATTATGGCCCGCTTCGGTGCCTTCGAT 1457839 33 100.0 34 TGCCTTCGAT ................................. CCAGGCACAGGACGGCACCAACCGCACCGTCATG 1457906 33 100.0 33 CACCGTCATG ................................. CAGGCCGCCGACCATGTCGGACACCAACTGCAT 1457972 33 100.0 33 CCAACTGCAT ................................. GCATGCCGACTGGCAGGGAATGGCTCCGTTCTG 1458038 33 100.0 35 CTCCGTTCTG ................................. TTGACAACGACGGTATCCTGCGCTGCGGTCTTGAC 1458106 33 100.0 35 CGGTCTTGAC ................................. ATACAGGCGCGGGAAAGCGCCATAACCGCGTACGA 1458174 33 100.0 33 CCGCGTACGA ................................. CCCGCGTTCTATTGGAACGCCAAAAGTCAAGAG 1458240 33 100.0 32 AAGTCAAGAG ................................. AAGAGTGTCTGAGAGATTTCCAGAGTGTCATA 1458305 33 100.0 34 GAGTGTCATA ................................. TTCGCATGTGCTGGGATTCTTCCTCTTCATCCAT 1458372 33 100.0 34 CTTCATCCAT ................................. TCGCTTGATGCTTATGGCGTGGCTCAGGCTTGAT 1458439 33 100.0 34 CAGGCTTGAT ................................. TGTCCGCCCCTGCCTCATTGTAGTTGGGGATATA 1458506 33 100.0 35 TGGGGATATA ................................. GTGCAATGAGCGTTGACGTATTCAACGCGCTGAAT 1458574 33 100.0 33 CGCGCTGAAT ................................. TAGCACGAACTGGGAAGAGGCGGATGCCAGCAA 1458640 33 100.0 32 ATGCCAGCAA ................................. TCGAATATGAAGAACGCACCTCGTACATCGAC 1458705 33 100.0 36 GTACATCGAC ................................. CGGCAGACACCACCGGCCGCCATGCGCTCCATTGGC 1458774 33 97.0 33 CTCCATTGGC ....T............................ CTGCTGCGCGAACGTCGGAATGCCGGACACGTT 1458840 33 100.0 34 CGGACACGTT ................................. TTTGGAGCACGGCTGGATCGGAGAGAACCCCATT 1458907 33 100.0 34 GAACCCCATT ................................. GCCACACCGAGCGCAACGGGTCGCTGCTGACCCT 1458974 33 100.0 36 TGCTGACCCT ................................. GTGCGCCTCTTCTGGGAAGAGGTCGTAGACGAAGCC 1459043 33 100.0 36 AGACGAAGCC ................................. CAACCAAGTGGCCGAAGCGCTGCTCGGAGCCGGCAA 1459112 33 100.0 35 GAGCCGGCAA ................................. CGTTCCTCGCGGGAATTGTAGAGGCGAGTGTCGGA 1459180 33 100.0 34 GAGTGTCGGA ................................. CCTTCCACGATGCGATCACCTCGGGCGTGAAGAC 1459247 33 100.0 34 GCGTGAAGAC ................................. TGGATGTCTGCACGACGTACCTGCACCGGTATAA 1459314 33 97.0 34 ACCGGTATAA ..........................A...... CATGCAAGCGCAAGAAAAACTTCGTCAACAGACG 1459381 33 100.0 34 TCAACAGACG ................................. AAATACGCAAAGTCAAGATGCTGGTGCTGCGAGA 1459448 33 100.0 34 TGCTGCGAGA ................................. CCGCTCCCCACGCATCGGCGTCCATCTTGCGCTT 1459515 33 100.0 34 TCTTGCGCTT ................................. GGTGGCGCATGAGGTTGTGGTGGCGGCGGGAGAT 1459582 33 100.0 34 GGCGGGAGAT ................................. TCTGCCAGAAAGTGAATCTGAAAGCTCAATGGCG 1459649 33 100.0 35 CTCAATGGCG ................................. GCGGCGCTGGTGAACCGTATCGGCGGTACTTATGT 1459717 33 100.0 35 GTACTTATGT ................................. GCGGCGCTGGTGAACCGTATCGGCGGTACTTATGT 1459785 33 100.0 34 GTACTTATGT ................................. TCTCCCTCTACGCCGCAATATTTGCGATTGCCGA 1459852 33 100.0 34 CGATTGCCGA ................................. GCGCATTCAAAAACGGCTTGTCCCCAACGGTTAG 1459919 33 100.0 33 CAACGGTTAG ................................. CACCTGGAAGTAATTGCTGGTGCATTCCGGATT 1459985 33 100.0 32 ATTCCGGATT ................................. CAGGCGCGTGGCTATCGCGCCATTTGCGAGAC 1460050 33 100.0 34 TTTGCGAGAC ................................. CCAATAAACAGCGTAAAAATGACGGGACATGGTA 1460117 33 100.0 33 GGACATGGTA ................................. CATCCGCCATGATTCAACGCCATCCTTCATCTC 1460183 33 100.0 34 CCTTCATCTC ................................. CAACTTCCAGCAGGAATACGTTCCAAGATAAGGA 1460250 33 97.0 34 AAGATAAGGA ..................T.............. CAACTTCCAGCAGGAATACGTTCCAAGATAAGGA 1460317 33 97.0 34 AAGATAAGGA ..................T.............. TCTTGGGGAGGCTGACTGACATGACGCGCAGTAG 1460384 33 100.0 34 CGCGCAGTAG ................................. CGACGCTCCTGCGGGTAACGCTCGTAATCAGGCT 1460451 33 100.0 34 TAATCAGGCT ................................. CGCCACGTCCGACCATCACGCCGACCTCGTCGCG 1460518 33 100.0 34 CCTCGTCGCG ................................. CATCGCCGCGCAGCAGTCGCGCATCGTTGAACTC 1460585 33 100.0 34 CGTTGAACTC ................................. CAACTACAGCCTCCCGCTCAACCTGAGTGACCTG 1460652 33 100.0 34 GAGTGACCTG ................................. CTGGTATCACCAATTTTCCAACCTTCATGACGGT 1460719 33 100.0 35 TCATGACGGT ................................. CGGCCTCGTACGCGACGTGGTCGTCGCCATTGCAA 1460787 33 100.0 34 GCCATTGCAA ................................. CACACGCCACATTCATCAACGCCATCAAGGGAGA 1460854 33 100.0 34 TCAAGGGAGA ................................. CACGGACGGCTGGTATACGGCGGCCGAGGTACGG 1460921 33 100.0 35 CGAGGTACGG ................................. CTCGCCGACCGGCTCACCGACCTGACCAACCTCGA 1460989 33 100.0 34 CCAACCTCGA ................................. CCTCTTCGGTCAGGCTAAACGCCTCGTCCAAGGT 1461056 33 100.0 36 CGTCCAAGGT ................................. CTTGACTGGTTCGAATTGCATGTGCGCGTATGGTAG 1461125 33 100.0 34 CGTATGGTAG ................................. CCAAAAGCGTCTGAGAGACTTCCAAGGTGTCATA 1461192 33 100.0 35 AGGTGTCATA ................................. CCCACGGCTCAACACATGGCTCCGCGACCAATGGG 1461260 33 100.0 33 GACCAATGGG ................................. CATGTACTCCGCCCATCGTCCCATGGAGTCTCG 1461326 33 100.0 35 TGGAGTCTCG ................................. CGGACTGGCATGATTCGGCTGACGTCACTTATGGA 1461394 33 100.0 34 CACTTATGGA ................................. CGTCGGTTGGTGCCGCATCAAGATGCACCTTGTA 1461461 33 100.0 35 GCACCTTGTA ................................. CACCGCACAGCCAACGATGTCGCCAATACGAAAGC 1461529 33 100.0 35 ATACGAAAGC ................................. CTATCGGATAACTAAGGGATGTAACCGTTTGTACC 1461597 33 100.0 37 CGTTTGTACC ................................. CCTGTACGGTGCTGCCCCAATACAGATTTTCCTTTTT 1461667 33 100.0 36 TTTCCTTTTT ................................. CTTCCAAATCATCGAGACGTTGCGCGATCTCGTGAG 1461736 33 100.0 34 ATCTCGTGAG ................................. CTGGACGCTCCCCAAGCCGAGGGGGTGGCTTCAT 1461803 33 100.0 GTGGCTTCAT ................................. CCGTGCAGCT ========== ====== ====== ====== ========== ================================= 86 33 34 ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [9,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [144,394] Score: 0.18/0.18 # # Final direction: R [0.74,5.36 Confidence: HIGH] >NC_008639 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1622087 32 100.0 35 GATTGTTTTT ................................ TTCGACTCGATGCGGATGCCGATGATGAGACGTCA 1622154 32 100.0 34 TGAGACGTCA ................................ CGATGCGGCGAAAGCTCAGCAAATTATCTTAAAA 1622220 32 100.0 35 TATCTTAAAA ................................ TTCGATTGTGTCGCCGCTGTGATTTCGATTGTGTC 1622287 32 100.0 34 CGATTGTGTC ................................ GGCGGGAACACGATGACCATATTCCTGATATCGG 1622353 32 100.0 35 CTGATATCGG ................................ TCCCCACTTATAATACGGCTCCCCGTCAGTTTCAC 1622420 32 100.0 34 TCAGTTTCAC ................................ GGCCGTGGAGCCTTGCTGAAAACGTAGGAGTTAA 1622486 32 100.0 34 TAGGAGTTAA ................................ CTAGATGTGTTGTGTTTGTTGATTGCCAGACAGA 1622552 32 100.0 35 GCCAGACAGA ................................ TTGCAAATCTTTAAGCGTCAGTCCGCCGGTATACT 1622619 32 100.0 32 CCGGTATACT ................................ GTAAATGATATGGATCTCGACCTGTTTAGTCT 1622683 32 100.0 TGTTTAGTCT ................................ GCCCCTCTCC ========== ====== ====== ====== ========== ================================ 10 32 34 GTTTCAATCCACGCGCCCGCAGGGGGCGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.30,-6.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [41.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [141,146] Score: 0/0.18 # # Final direction: R [0.74,4.77 Confidence: HIGH] >NC_008639 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1625359 32 100.0 36 NNNNNNNNNN ................................ AGGCTATCCGTATCTGCGCTTTCACGTCTGTAAGCT 1625427 32 100.0 34 NNNNNNNNNN ................................ CTGTCATTGATGGCCGATGATTTCCGTGAAATAG 1625493 32 100.0 34 NNNNNNNNNN ................................ AAGGCCAAATCGACCACATCGACGGCGACGGTCT 1625559 32 100.0 34 NNNNNNNNNN ................................ GTGATGTCGCGTTCCGGCACGACGCGCTCAAAAA 1625625 32 100.0 37 NNNNNNNNNN ................................ CTGCATCCACGGCAGTTCAGGGGAGGGATTCGGTTAT 1625694 32 100.0 35 NNNNNNNNNN ..............T................. GGTGTCACTTACGGTTGTGTTTTTTGATCGGAATC 1625761 32 100.0 37 NNNNNNNNNN .A............CG..CGCCA...G...CT ACCATTGAATACTACAAAGATGGAACCTCAACTACTC 1625830 32 100.0 35 NNNNNNNNNN ................................ CATGCTTGCCATTACCCTGATCGCAAGCCACCCAA 1625897 32 100.0 34 NNNNNNNNNN ................................ AAAAGGTGATTGTGATCACACACCTGCCAAGCAT 1625963 32 100.0 36 NNNNNNNNNN ................................ TCGGATTGTACTCTCTTGCCAAGTGGGTGATCGGCA 1626031 32 100.0 34 NNNNNNNNNN ................................ AGTTGTCCAGGCCTTGCACGACCTCAATCAACGG 1626097 32 100.0 36 NNNNNNNNNN ................................ CTCGTGATCAAGGGTATGCAGGTGAGCGTAGACATC 1626165 32 100.0 34 NNNNNNNNNN ................................ GAAGCTCAGCGATGCGGAAACCGTAATCAACGAG 1626231 32 100.0 34 NNNNNNNNNN ................................ ACTTGATTTTCATTGGTCTTATGCCGGGCAAAAC 1626297 32 100.0 35 NNNNNNNNNN ................................ GTTTTTATCCTTTGTCCGGAGCTTCATCGGTGTCA 1626364 32 100.0 35 NNNNNNNNNN ................................ CTCAACAGCATCGCCCTGCTTGAAACCACCGAGCG 1626431 32 100.0 34 NNNNNNNNNN ................................ GTCCTTGGTGCGGCGGACGCAGATGAACTGCTCA 1626497 32 100.0 33 NNNNNNNNNN ................................ AACACCCGATGGCTTATAGGCCTGTTTTTCAGC 1626562 32 100.0 35 NNNNNNNNNN ................................ AAGATATGTTTTATGCGGTATGGGACGGGTATATA 1626629 32 100.0 33 NNNNNNNNNN ................................ TTTAATGCTCCCGATGGAGTACGATCCAAAAAG 1626694 32 100.0 33 NNNNNNNNNN ................................ CGGACTGATGAAAAAGCACGTCTTAACATACCT 1626759 32 100.0 35 NNNNNNNNNN ................................ ATACTGAGCCTGTAGGGTTTTATCATCCTGTTTGA 1626826 32 100.0 33 NNNNNNNNNN ................................ CAAGGTAAGCCAGATAAGCCAGATCAGAACCGA 1626891 32 100.0 34 NNNNNNNNNN ................................ AAATCAAGATAGAGTATTATGAGTACCTTTACGC 1626957 32 100.0 35 NNNNNNNNNN ................................ GTTCTTTCCATATTGCATGACGTGTCCAGTACTCG 1627024 32 100.0 35 NNNNNNNNNN ................................ CACTTGGCCGCAAGCTTGAGAATATCGCAGTTGTA 1627091 32 100.0 36 NNNNNNNNNN ................................ TTAACATAAATGTCAATTTTCGGACAACCAGTTTGT 1627159 32 100.0 34 NNNNNNNNNN ................................ TTTATCAACACCAATGTTTTTAATGTAGTTGCGT 1627225 32 100.0 36 NNNNNNNNNN ................................ ATTCGGCAAGCATTTCAGGTACAGCGCATGTATGAA 1627293 32 100.0 34 NNNNNNNNNN ................................ CATTATCGTAATCCATTGTTGACAGCAAAGTGTT 1627359 32 100.0 34 NNNNNNNNNN ................................ CCGATCTTATCGGATCGTTTGCCACTTTGACAGC 1627425 32 100.0 36 NNNNNNNNNN ................................ ATGGAATAGGTGCAAACAAAATGACACTTGGAAACG 1627493 32 100.0 35 NNNNNNNNNN ................................ TGTAAAGGAGATGTGCGACGCCATAAAATGGGCAA 1627560 32 100.0 33 NNNNNNNNNN ................................ CAGCACAAGACGCTGCTCGGGTGTATGCTGCAG 1627625 32 100.0 34 NNNNNNNNNN ................................ TATTGATGTCGGGTTTTGGCACGACGAGTACACT 1627691 32 100.0 34 NNNNNNNNNN ................................ CTACTGTTGTAATAGTGGCAGTGGTAATTTTTAT 1627757 32 100.0 34 NNNNNNNNNN ................................ ACACAATTGTGGGCGCCCGCCAAAAAACGATATA 1627823 32 100.0 33 NNNNNNNNNN ................................ AAAGGCTCCGGTTGACAACCGCGCTGCTTAACG 1627888 32 100.0 33 NNNNNNNNNN ................................ GATTCCATACCGACTGGTGAAATCACTGGTATG 1627953 32 100.0 34 NNNNNNNNNN ................................ AAAAAGCGACATAGAAGAGCGCATTTATGGAGAC 1628019 32 100.0 33 NNNNNNNNNN ................................ GCACTTGATCCAGAGCATGCAGCGCGAGTTGCC 1628084 32 100.0 34 NNNNNNNNNN ................................ TGTATACTCAGATAAGGCCGTCAGAAAGCCTAAA 1628150 32 100.0 34 NNNNNNNNNN ................................ GTGGCACCACATAGTACCTGCAGGAGACATGCGC 1628216 32 100.0 35 NNNNNNNNNN ................................ AAAAACAGATCAAGTGGGCAACTGACATCAAAGCC 1628283 32 100.0 36 NNNNNNNNNN ................................ GATTTTAACCTGGATTTCGACACCGCATTTCTCGAA 1628351 32 100.0 33 NNNNNNNNNN ................................ TTGCTTTTGCGTATTTTTCTGCCGCCCAACGGT 1628416 32 100.0 34 NNNNNNNNNN ................................ CTTTTGTCATTGCGGTTTGGTGTTGCGCACGCAA 1628482 32 100.0 36 NNNNNNNNNN ................................ TACCGCAGGTCAGACTGTCACGATTGGCCTTGCAGT 1628550 32 100.0 33 NNNNNNNNNN ................................ TTAATTAGTGGATGAGACAATGACAACAAAACA 1628615 32 100.0 34 NNNNNNNNNN ................................ TGCCTTCAATATCAGGGTTCACGCCCTGTATCGC 1628681 32 100.0 34 NNNNNNNNNN ................................ ATTTCCCCCTTGATAATCTCGCTCATCTGCCCGA 1628747 32 100.0 35 NNNNNNNNNN ................................ TATGAGCGTTTACGACATTAAAGCCGGAGGATGGA 1628814 32 100.0 33 NNNNNNNNNN ................................ GATTACCGCCATGTCGCTGACGTACCTCACCCT 1628879 32 100.0 36 NNNNNNNNNN .................T.............. CTTAACCATGAGGACGACGCTCTTGAGGGTATGGAA 1628947 32 100.0 36 NNNNNNNNNN ................................ GTGAATTTCAATGCTCCTGGATAAGATGTAAGAGTA 1629015 32 100.0 36 NNNNNNNNNN ................................ CATTGATCAAGAAGTGAAGCGCAAAAAGATAGACGT 1629083 32 100.0 36 NNNNNNNNNN ................................ TAATACTGGTATATTCGATGAGGCTGGTGAATACCT 1629151 32 100.0 35 NNNNNNNNNN ................................ ATGAGAATCTACCATCTGATCAAAGTCTACATCTC 1629218 32 100.0 35 NNNNNNNNNN ................................ ACAATTCTGCAGCAAAAGAAGCTCAAGCAAACAGA 1629285 32 100.0 33 NNNNNNNNNN ................................ GCCATATATCCAAAGGCTGCGGGTTTGTTGAGC 1629350 32 100.0 36 NNNNNNNNNN ................................ GTAGCCGGGAGCGATGATAATCTTGGCCGTGTAGCC 1629418 32 100.0 33 NNNNNNNNNN ................................ CACTCCGCGCAACTGTCCCGGCCTTGTCGGCCT 1629483 32 100.0 34 NNNNNNNNNN ................................ TCGGCATCAGCTCTGTCGAGTACACCATTGCCTC 1629549 32 100.0 35 NNNNNNNNNN ................................ GTCGTTCACATCCTCGAGGATTGGCAGGACTGGAC 1629616 32 100.0 33 NNNNNNNNNN ................................ TGACGATTACGCTATCCACCAGCTTCGAGAGCG 1629681 32 100.0 35 NNNNNNNNNN ................................ CACCGAACATTACAAAGATGGAACCTCCACAACTC 1629748 32 100.0 34 NNNNNNNNNN ................................ AACCAACCAGACTGGGCAGACGTCCAGATGGTAA 1629814 32 100.0 37 NNNNNNNNNN ................................ GACCTTTGGGATATGGGTTCACGATGGGCGACAATAT 1629883 32 100.0 37 NNNNNNNNNN ................................ CAGCCGGGGTATAGAGCTTTCAAGCAGCTTGCCTTGA 1629952 32 100.0 35 NNNNNNNNNN ................................ CAACCGGGATGTGCAGTCCGTGCGAGATCAGCTTA 1630019 32 100.0 35 NNNNNNNNNN ................................ CTGATGCCGCACCGGTTCCCCTTCAAGTTCGACTG 1630086 32 100.0 35 NNNNNNNNNN ................................ CCCTCATAAGAAGATGCCGGGACGCCTTTTGTCTC 1630153 32 100.0 35 NNNNNNNNNN ................................ GTTGGCTGGTGCAAGACGGAGGAAAGCTATGATAC 1630220 32 100.0 33 NNNNNNNNNN ................................ GGGATCGATGCCGATACTCCGTCTGTCGTAATG 1630285 32 100.0 34 NNNNNNNNNN ................................ TTTATGTCGTTGATCGTGTATAGCCCGACGATAA 1630351 32 100.0 34 NNNNNNNNNN ................................ CATGCAGACCACCTGCGCTGACGAGCAGGAAGCA 1630417 32 100.0 35 NNNNNNNNNN ................................ GACGGCTTTACGGTAGATCGGGCAAATGATGCGGT 1630484 32 100.0 36 NNNNNNNNNN ................................ GCATGTGTCGAACAGATCACCATCGAAGAGAACCGT 1630552 32 100.0 35 NNNNNNNNNN ................................ CGGCAGAGGGCTGAGTTGCAAGAGCGCCTTGATGC 1630619 32 100.0 35 NNNNNNNNNN ................................ GATAACAAAATTACCTGCAAGCACAAAAAAAAGCA 1630686 32 100.0 35 NNNNNNNNNN ................................ AGAGGCGCCCCGGCGGAACGTGCTGAGTTTTACCA 1630753 32 100.0 34 NNNNNNNNNN ................................ GGAGGACATCTTCATCAATTCTTCATCTGTGATT 1630819 32 100.0 37 NNNNNNNNNN ................................ CTCAAAAAAATTCATTAAAAAGTATTGTGATTGCAGG 1630888 32 100.0 33 NNNNNNNNNN ................................ GGCCAATGCAGCCGGGAACCGTAACCCCGGATC 1630953 32 100.0 35 NNNNNNNNNN ................................ ATGGCAAAGCCTGAAAAAATATTCATGCGCTTTGA 1631020 32 100.0 36 NNNNNNNNNN ................................ CTTTGCCGAAGGTGCCACAAAATCAAGCATCGCGGG 1631088 32 100.0 35 NNNNNNNNNN ................................ GTGCAAGGAAGTCTTCCAAATTCCCTTTGTGTCGA 1631155 32 100.0 35 NNNNNNNNNN ................................ AAGCTGATGAACGACGAGCTATCAATTAAAAAACA 1631222 32 100.0 33 NNNNNNNNNN ................................ AGAAGAGCAAAGCTTGCCGTTAATCCATTGTGC 1631287 32 100.0 35 NNNNNNNNNN ................................ ATTACCCGAATGGCCAACCATCCGAGTATCGCGAA 1631354 32 100.0 36 NNNNNNNNNN ................................ GTGGATCAATATGGTCAGATTCCAGGATTGCGGAAT 1631422 32 100.0 34 NNNNNNNNNN ................................ ATAGTGAATTTTGTGAAAATCACATATAGGAGAT 1631488 32 100.0 33 NNNNNNNNNN ................................ GTGGTACTTACTCCTTTTATGGGCGTAGGATCG 1631553 32 100.0 35 NNNNNNNNNN ................................ TGCGGGAGCAGCTTGATGGCGGTGACGTTTTCGAC 1631620 32 100.0 33 NNNNNNNNNN ................................ TTCTGTCGCCGGCGGCGCTCAGGTGCTGCAGAT 1631685 32 100.0 36 NNNNNNNNNN ................................ GGATATTTGACTGACGTTAATGTGATCGATGGCGTT 1631753 32 100.0 35 NNNNNNNNNN ................................ AAAGCGGAGTCGAGGATATGACAATCTCAGCCATT 1631820 32 100.0 34 NNNNNNNNNN ................................ AAACTACGATCTTGGGGCGGAGGTTGTTCGGAGC 1631886 32 100.0 35 NNNNNNNNNN ................................ TCCGGATTCGACGTTTGTCGGGTAGCTTCCGGCGG 1631953 32 100.0 33 NNNNNNNNNN ................................ TCTCGCGGAGTTGTACATCTCGACCAACAAGGT 1632018 32 100.0 34 NNNNNNNNNN ................................ TCATACCATTGTGTGTTGATATGATGCGCAGAGG 1632084 32 100.0 35 NNNNNNNNNN ................................ AAGAAGGTTTATTATAAGCCTTTTGCGCCTCATGC 1632151 32 100.0 35 NNNNNNNNNN ................................ TAACTTTAGCATGGTACCATCTGTAAGTGTACCGA 1632218 32 100.0 35 NNNNNNNNNN ................................ CGAATTTGCGACAATGTCGCGAAACCCTGGAGTCG 1632285 32 100.0 35 NNNNNNNNNN ................................ CCAACAATTGTTCCCGTTGCTGAATCAGTAACGGT 1632352 32 100.0 34 NNNNNNNNNN ................................ GTTATCCGCAAAAACAAATTCGCAATCCTCAACA 1632418 32 100.0 34 NNNNNNNNNN ................................ ATCTGCGCTTTTACATCAGCAAGCTGCACAGGAT 1632484 32 100.0 34 NNNNNNNNNN ................................ CCCTCTATCTTTGATCGGTTTTGCTCAAGAGACG 1632550 32 100.0 34 NNNNNNNNNN ................................ CTCACGACATCGGGGTGCGGGAACTGATGAGCGG 1632616 32 100.0 33 NNNNNNNNNN ................................ AGCCATACGGACACAGCCGCGCAACATTCCGTT 1632681 32 100.0 34 NNNNNNNNNN ................................ CGTTTCTCGATCAAGTGATCGGCGATATACGGCA 1632747 32 100.0 34 NNNNNNNNNN ................................ CGATGGCGCAGGCCAAAACCGTTGAGGCTCAAGC 1632813 32 100.0 37 NNNNNNNNNN ................................ GCATGGTCGAGAAAGAGTTGCCTGAATCGGCACCTGT 1632882 32 100.0 36 NNNNNNNNNN ................................ CAATGCTTCTGTTAAGTTGAGCAAGCGCAATCACTG 1632950 32 100.0 36 NNNNNNNNNN ................................ CACAGCCCGCCCTTATCAGCAGGCGTTGTTCGAGGC 1633018 32 100.0 1 NNNNNNNNNN ................................ NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 116 32 34 GTTTCAATCCACGCGCCCGCAGGGGGCGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.30,-6.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [48.3-50.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [166,179] Score: 0/0.18 # # Final direction: R [0.74,4.91 Confidence: HIGH] >NC_008639 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 2378114 35 100.0 43 CAGAATTTTA ................................... TCTTGGAAAGTGGGAACCACTTGCTAAAGAATACGATGAGATG 2378192 35 100.0 38 CGATGAGATG ................................... TTTTTAGTAGGAAGGTCCTCGATCATTTAAAAGATTTT 2378265 35 100.0 41 AAAAGATTTT ................................... GATGTACGGCATTCTTCGTGAGTACTTGTTCCGTTGCGGCT 2378341 35 100.0 38 CGTTGCGGCT ................................... GCGAGCCGGGGGAGGTTGTTGGTGTTGTGATGATAACA 2378414 35 100.0 40 GATGATAACA ................................... CCCGCCTCGCTTAAATCGGTCAAGGTCTCCTTGGCGTTAA 2378489 35 100.0 49 TTGGCGTTAA ................................... AACTACAAAGAAGGTCAGATTCACTTATTGTCCGATGCTCTTGAGAACA 2378573 35 100.0 37 CTTGAGAACA ................................... TTGTCGCAACGGGTAAGCTTGACGTCCCGCAGATGCT 2378645 35 100.0 39 CGCAGATGCT ................................... TCGCCGTGCAGGCGATTGTTGGGGGCATTCTCTATGTTC 2378719 35 100.0 46 CTCTATGTTC ................................... TTTAAGCAGGAACGAAATTGCAATTATCAGAATTGGTTTTTTAAAG 2378800 35 100.0 41 TTTTTTAAAG ................................... TGATTGTTGATCACGGCGTCGCCGAAGTATTCTCTGCATGA 2378876 35 100.0 41 CTCTGCATGA ................................... CAATCCGGTGGGGGTCGTTCTGGCAACCGACACAGTCGCAA 2378952 35 100.0 41 ACAGTCGCAA ................................... TGCAGAATATCTGAAAGATGCAAGAACAATCACGAACGGAA 2379028 35 100.0 41 ACGAACGGAA ................................... ACGCGCAATATGGTCGTTGCGCAGAAAGCGATTAAAGTATG 2379104 35 100.0 TTAAAGTATG ................................... AGTACCTCTG ========== ====== ====== ====== ========== =================================== 14 35 41 GTTTCAATCCTCTATGAGTGCAATAAGATATAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [68.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [903,266] Score: 0.18/0.18 # # Final direction: R [0.45,4.5 Confidence: HIGH] >NC_008639 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 2383130 35 100.0 45 TGGATTATCT ................................... TTGACGTTGGGCGTAATGGTATTTGTCATGCCATCATTCCTGAAA 2383210 35 100.0 40 ATTCCTGAAA ................................... CGTTGACTACGACGCTCACATTGCAAAGAACGGAAAGAAG 2383285 35 100.0 36 CGGAAAGAAG ................................... TTTGGATACGTGAGGGCGATGAATATCGCCCACCAA 2383356 35 100.0 40 CGCCCACCAA ................................... GAAACCTCATGGAGGACAGAGAAAAAGAAAAAATACGTTT 2383431 35 100.0 43 AAATACGTTT ................................... AACGGAATCCGGAAAACCATGTACGACGGCGGAAACTGACAAT 2383509 35 100.0 38 AACTGACAAT ................................... CGACACTATCCCCAAAGGAGTCCGGAGTACCGGATGGT 2383582 35 100.0 38 ACCGGATGGT ................................... TAATAACAACAATAAAAAAGGAGTAGTCGAATGCGTAA 2383655 35 100.0 38 GAATGCGTAA ................................... TCCCCGAACACAAATTGCAGAAGGAATTGATCATTTAT 2383728 35 100.0 33 GATCATTTAT ................................... AGGCGACAGCAACTGGTGGCAACGCCAGTGCAA 2383796 35 100.0 36 GCCAGTGCAA ................................... AAAATGTACATTGACGGTAAAGATGATAAACGTTAA 2383867 35 100.0 38 TAAACGTTAA ................................... TGTCAACCTTGTTAGCTTGCAGTAGAGAATACGAGACA 2383940 35 100.0 45 ATACGAGACA ................................... TTGGAAAAAAGTTTTCAGTTTTTGGGGAGCATTCCTCAATATTCT 2384020 35 100.0 37 TCAATATTCT ................................... CAGATGAAGCTCGAAATCCACCATCCCAACAAGAAAA 2384092 35 100.0 36 AACAAGAAAA ................................... TCGGCAACAATGGAGGTGATTATGGGTAAGTATTAT 2384163 35 100.0 TAAGTATTAT ................................... AGTACCTCTG ========== ====== ====== ====== ========== =================================== 15 35 38 GTTTCAATCCTCTATGAGTGCAATAAGATATAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1208,424] Score: 0.18/0.18 # # Final direction: R [0.45,4.5 Confidence: HIGH] >NC_008639 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2390735 37 100.0 41 AAAGGTACAT ..................................... TTGAAGGGAGCAGGGCCAACAGCTGGCGCAGATTGTATGGT 2390813 37 100.0 39 ATTGTATGGT ..................................... ACGGGTTCACGGAGCGGCATGGGGTCGCGATTTAAAATA 2390889 37 100.0 43 ATTTAAAATA ..................................... AATGAAATTTACTCAATGCACTTTGTCAGATGCCAAAGGCAAG 2390969 37 100.0 45 CAAAGGCAAG ..................................... ACAAACCCAAGACAGGCCCTGATGGAAAGTGAGCCAGTTTATTAA 2391051 37 100.0 34 AGTTTATTAA ..................................... GTAAAAGGCCCTCAACACTTCAATCAGGTCTCGG 2391122 37 100.0 41 CAGGTCTCGG ..................................... TTGATCGGGTGCATGAAAATAACATCCGGTTCATCCCCCCA 2391200 37 100.0 43 CATCCCCCCA ..................................... GCTCGATTGCATAACGAACAGATGGCGGATTTGGCGATAATTT 2391280 37 100.0 43 GCGATAATTT ..................................... CGGACGAAAATGCCCACCGGACGATATGGGCGGATTACTTGAA 2391360 37 100.0 42 ATTACTTGAA ..................................... AACATGAATTTTTTGACAATTCATACTTTCTGGTATGATATT 2391439 37 100.0 41 GTATGATATT ..................................... CAAGCTGGCAGGACGCCTTGGCGATATGCGACGAGGTCAAC 2391517 37 100.0 40 CGAGGTCAAC ..................................... AAGGCCATCAGCACTTCGATCAGATTGTAGCGGCCTACAA 2391594 37 100.0 40 CGGCCTACAA ..................................... GAAGCAAGGAATTGACACAACAAGAAACGTTACTGCTGAA 2391671 37 100.0 44 TACTGCTGAA ..................................... CCGTTATGTGCTATGGCAAGGCTGCCGGAACGATAGGTTAAAGA 2391752 37 100.0 46 AGGTTAAAGA ..................................... TTTTGAAATTCTACCCGAAGAAGAAGGCAGACAAAAGTACCTCATT 2391835 37 100.0 40 GTACCTCATT ..................................... AAATGAATAACTTTGTGAAAAGAGTTATGGAAATTCCTGT 2391912 37 100.0 40 AAATTCCTGT ..................................... TGTTATGGGCTCGGGTCTCAACATCTCAGGCGGTACTTTC 2391989 37 100.0 37 CGGTACTTTC ..................................... AACACACAATACAGTCGCATCGTCTCACAGCGCCTAA 2392063 37 100.0 44 CAGCGCCTAA ..................................... GTTTCAGAATGCGGCGAACGCTGAAGAGAAGACGATTTCGTTTT 2392144 37 100.0 40 ATTTCGTTTT ..................................... TCACAGTTCTTCGCACCGAAGAGAGCCGCGGCAGATGCCC 2392221 37 100.0 GCAGATGCCC ..................................... TGTACCCTGT ========== ====== ====== ====== ========== ===================================== 20 37 41 GTTTCAATCCCTCTTAATACGTCAGGTCTTAATCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.16%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.10,-2.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [58.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1237,269] Score: 0.18/0.18 # # Final direction: R [0.45,4.87 Confidence: HIGH] >NC_008686 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 2425977 32 100.0 34 TCTTGCCGGT ................................ GCTTGGATATGCCCGATGTTCGCCGGTTCGAGAT 2426043 32 100.0 34 GGTTCGAGAT ................................ ATAGGACGAACCCCGCGCCGCCATCGGGATACAG 2426109 32 100.0 34 CGGGATACAG ................................ AGGCAGCAATCGCGCTGGCTGGGGCAGGAGTGCT 2426175 32 100.0 35 CAGGAGTGCT ................................ CGACCGTCGCTCGGATCGACGACGCCCCGGAATAG 2426242 32 100.0 34 CCCGGAATAG ................................ TGGGGCGCGCGGATCGCGCCCGATGGTGACACGA 2426308 32 100.0 35 GGTGACACGA ................................ GACATGACGGCGCACCATCATTTCATAGGATTTCA 2426375 32 96.9 TAGGATTTCA ...............................G CGAAACCGA ========== ====== ====== ====== ========== ================================ 7 32 34 GTTTCGATCCACGCCCCCGCGAAGGGGGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.30,-7.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [36.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [487,130] Score: 0.18/0.18 # # Final direction: F [0.96,0.64 Confidence: LOW] >NC_008698 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 1249450 25 96.0 44 AGGCTTAAAA .......C................. TCAGGGCGGTAAAGCTTGCACTACTATACACCGGAGACGGCCTT 1249519 25 100.0 43 AGACGGCCTT ......................... TGGCGGCGCTCTGGTCGCCGCTGCTGCGGGGCACCCCGCTGGA 1249587 25 100.0 39 CCCCGCTGGA ......................... CTTTTAGGCTTCTCCGGCTCGAGCTTTACGAAGTTCCCT 1249651 25 100.0 39 GAAGTTCCCT ......................... GTTTCCTAAAAATTTCGTGATAATTTTCTCGCTAGACAG 1249715 25 100.0 38 CGCTAGACAG ......................... CTCGAACAGCCAGACGTCCGCCCCCGCCCGTTTGTATA 1249778 25 100.0 41 CGTTTGTATA ......................... CCCAAGACATGGTGAAGGCGGCTATACTCAGCCTCGCGGCG 1249844 25 100.0 43 CCTCGCGGCG ......................... AGAGAGAAGTTCTATGTGACAGAGAACTGACATTAAGATTCAT 1249912 25 100.0 37 TAAGATTCAT ......................... ACCGCGTCAACTTCGCCGTCGAGCACGCGCTCGTACT 1249974 25 100.0 CGCTCGTACT ......................... CCGATCATTT ========== ====== ====== ====== ========== ========================= 9 25 40 CTTTCAATGCTTTCACAGTTGCTTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [45.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [218,396] Score: 0/0.18 # # Final direction: R [0,5.18 Confidence: HIGH] >NC_008698 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 1227253 24 100.0 33 TCGCGGTTCG ........................ AGGGTGGCTTGATGGTGTGATCCACAACCTTGC 1227310 24 100.0 36 ACAACCTTGC ........................ TAAGGACGTCGAGACTATGGAGCCACTCGCCTGTAT 1227370 24 100.0 48 TCGCCTGTAT ........................ TTGCACGGGGCGACCACGCCGATACCCGGTATGGCGACCACGGTTATT 1227442 24 100.0 38 CACGGTTATT ........................ GCGACGCCGGGCGAGGCGATGTGGGCGCCGAAGGCGCT 1227504 24 100.0 42 CGAAGGCGCT ........................ CGAGCTGGAGAGGCTTGCGATAATCGGGGCAATAAGCGATTT 1227570 24 100.0 37 TAAGCGATTT ........................ ATGTAGCAGGCTACTGCGGAGTCGCGTCCGCCGCTAA 1227631 24 100.0 42 CCGCCGCTAA ........................ TCGCGAGATCCAAGACACTCAGAACTTGGTTCAAGCTTAATA 1227697 24 100.0 39 AAGCTTAATA ........................ GGTGACGGGAAGCACAGGGTCTTCGAGTTCGTGGGCTTG 1227760 24 100.0 34 CGTGGGCTTG ........................ GCGCATATGCGGGGGGACGGAACCGACTAAACGT 1227818 24 100.0 45 GACTAAACGT ........................ TTGAACGGAGCAGGCGGGGCGGGGTGAACCGGTAGGTTTTGGGCG 1227887 24 100.0 46 GTTTTGGGCG ........................ GGCCCTCCAGAGGGAGGGCATACTGCCGCCTTAGCCAAGCTCCCTA 1227957 24 100.0 31 AAGCTCCCTA ........................ TCTGGCATGGTTGCTAGGGTAAGATCCGTTC 1228012 24 100.0 39 AGATCCGTTC ........................ TGAAGAACATAAACGAGGCTATACTAGGTACTAGCGCGC 1228075 24 100.0 ACTAGCGCGC ........................ TGAGGGGTTT ========== ====== ====== ====== ========== ======================== 14 24 39 CTCTTAGTCTTGCTGATTTTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.50%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [48.3-50.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [83,419] Score: 0.18/0.18 # # Final direction: F [0.37,0.18 Confidence: MEDIUM] >NC_008698 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 1219331 25 100.0 41 AAAGTGGTCG ......................... GTAAGTAACGTTGGCAGTTACGAGGTAGCCCCGCGGAGCCC 1219397 25 100.0 37 CGCGGAGCCC ......................... TCTCCTCAAGCTTCTCCGCCAGTTGCCCGATCCTCTC 1219459 25 100.0 40 CGATCCTCTC ......................... GAGGCACTGCTGGAGGCGGCCAGGGTGCTCAACGTCAGCG 1219524 25 100.0 42 AACGTCAGCG ......................... GCTCATTACGCCTCACCCACCAGCAATGCGGCTTGGTAGACT 1219591 25 100.0 48 TTGGTAGACT ......................... TTCGAGCAAATGAGCGTGGACGAGCTGCGGCAGGAAGTGCTGATGTGG 1219664 25 100.0 42 GCTGATGTGG ......................... AAGTTTCACTCTTTCGAGCTCGTCGGTCGTCTTCTTTAGTAT 1219731 25 100.0 38 TCTTTAGTAT ......................... TTACGTATGAGTTCATCGACACCGGCAAGCAGGTTCAC 1219794 25 100.0 38 GCAGGTTCAC ......................... ACCAGGACCGAGAGCCGCTGCTCCAGCTCCGGGCTCAA 1219857 25 100.0 42 CCGGGCTCAA ......................... TTCGGAGGGATTTCCCAGCGGTTGCGACGTCTATTGCACGGA 1219924 25 100.0 39 ATTGCACGGA ......................... TTACTCGCCAAGCGCTGTGAAAGGCTCGGCGCAGTGGGG 1219988 25 100.0 43 CGCAGTGGGG ......................... GGATATACGCCACGGAGGAGGTCGCCAGGAGCCTCGGCTCCGC 1220056 25 100.0 TCGGCTCCGC ......................... GCTCGTGCTC ========== ====== ====== ====== ========== ========================= 12 25 40 GAAGCAACTGTGAAAGCATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [56.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [310,27] Score: 0.18/0.18 # # Final direction: F [4.95,0 Confidence: HIGH] >NC_008698 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 1252258 25 100.0 41 AAAGTGGTCG ......................... CAACGGTTTGCTTTGCACCGCGACCTTGACTTTCCATTGTT 1252324 25 100.0 40 TTCCATTGTT ......................... TACGACGACGTCTGGTCGCGGGCGACCATAAAGGTCGCGA 1252389 25 100.0 41 AAGGTCGCGA ......................... CACGCGGGGCACACGTGCTTACAGGGTGGACAAGGCGGCGG 1252455 25 100.0 49 AAGGCGGCGG ......................... TCAGGGCAGGCTTGTTCACGCGCAGATGATCAGCAACGTTACTCGCACC 1252529 25 100.0 40 TACTCGCACC ......................... CGTGCTTCTTCGGGCTGTCTAGCTCGGCCACCGTGGCCCT 1252594 25 100.0 46 CCGTGGCCCT ......................... AAACGCGCATTCCAGCACCACACCCTCATCGTTTACACTCACACGG 1252665 25 100.0 52 ACTCACACGG ......................... CATGCAATTGCCGCGACACCATATTCTCGGGTTAGCGCGCGTACATGAGAGA 1252742 25 92.0 42 ACATGAGAGA A...T.................... ACCAAGCACAACTCACGACAACGGAGACGCAAACAACGGTGA 1252809 25 96.0 43 ACAACGGTGA .............G........... TCGTAGAACGCCTCGCCGTGCAGCACGCGGAACCTAGCCATGT 1252877 25 92.0 CTAGCCATGT ................T.......A GCTCTCCCCGCTGAACGTGATCGCCATTATTGTTTGTGCCCCT ========== ====== ====== ====== ========== ========================= 10 25 43 GAAGCAACTGTGAAAGCATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1624,80] Score: 0.18/0.18 # # Final direction: F [5.36,0 Confidence: HIGH] >NC_008698 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 1253865 24 100.0 31 CAGCTTGCAA ........................ CGCTCCGGTATCTCGTGCGCGTGCGCCAGCA 1253920 24 100.0 37 TGCGCCAGCA ........................ AAGGTTGAAGGCGCGGTAAGCCTCGTGAGCCCCGTTA 1253981 24 100.0 37 AGCCCCGTTA ........................ TACACCTCGTCCACGTGTACGGAGCGGTGCTCGTCGA 1254042 24 100.0 38 TGCTCGTCGA ........................ ATGGGCGGGGAAAACCCCGCGAGGTGAAACGAGTGAAT 1254104 24 100.0 33 ACGAGTGAAT ........................ TAGCCGTTTCCTTGTCCAGCCTTGTCACGTCGA 1254161 24 100.0 33 GTCACGTCGA ........................ CCGGCCTTTATGCATTCACTCCCGGCGACACGC 1254218 24 100.0 36 GGCGACACGC ........................ TGCTTCCCAGCGAGGGAGACCACGCCACCAGGTTGT 1254278 24 100.0 36 ACCAGGTTGT ........................ CCTATAAGTTCCGTAACTCCGCTAGAGGGTTGATAC 1254338 24 100.0 36 GGGTTGATAC ........................ TGAAAAGAGATTAATCTAATCTCTTTACTCTAGGGA 1254398 24 100.0 38 ACTCTAGGGA ........................ CGCACGCGTGTCCATTCTACTTCGAGAGGATACTCCTC 1254460 24 100.0 33 GATACTCCTC ........................ CTACACCTATGGGAAGCTGGGGCTGTGGAGCGA 1254517 24 100.0 32 TGTGGAGCGA ........................ ACTCAATCGGCGTGAGCTTGCCGTTCAAGAAG 1254573 24 100.0 32 GTTCAAGAAG ........................ TGGCTTGCCCGCCGAACAGCCCCAGCTTCGCC 1254629 24 100.0 36 CAGCTTCGCC ........................ TTACCGCGACGAAAGCGCCGACGCCTACTATGTTTT 1254689 24 100.0 46 ACTATGTTTT ........................ ACGATGGTTTCAACGAAATCCCGTTGCCTGTTACATGGTCGGCAAT 1254759 24 100.0 37 GGTCGGCAAT ........................ CGCGTCTCGATCTCACGGGTCTGGGGATGGCTATCAA 1254820 24 100.0 34 TGGCTATCAA ........................ TAGGGGAGTGGTTCCCCCTGCATGGGCTTTTCAC 1254878 24 100.0 GGCTTTTCAC ........................ TGAGGGGTTT ========== ====== ====== ====== ========== ======================== 18 24 35 CTCTTAGTCTTGCTGATTTTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.50%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [308,205] Score: 0/0.18 # # Final direction: F [0.37,0 Confidence: MEDIUM] >NC_008698 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 1256144 25 100.0 41 NNNNNNNNNN .....GGT.........T....... TCTACGGACGTAACACCGCCACACGGACGCTACCTCTTTCA 1256210 25 100.0 40 NNNNNNNNNN ......GT....C...C........ TGAGAGACGAGGCTGGGAAGCCCTTCGCCGTATACTGGCT 1256275 25 100.0 42 NNNNNNNNNN ................CT....... TTCGAGATCCACCATGAGCCAGCGACCGTCGCTAATGTAGTA 1256342 25 100.0 40 NNNNNNNNNN ......................... GCCTCGACGTGAAGAAGAGGTACACCTACCCCTGGCTCGG 1256407 25 100.0 46 NNNNNNNNNN ......................... TGGGGGTTGCGCAGAGCTGAGCAGGCAAGTATTGTTTCCACTATGT 1256478 25 100.0 36 NNNNNNNNNN ......................... ACGCCTGGCGCGAGTTTCGGTGGCGGTGGTGATAGA 1256539 25 100.0 44 NNNNNNNNNN ......................... TGACGTTGGGGGGCGGGGGGTGAGCCTTCGGAGGATCAGGGTAG 1256608 25 100.0 40 NNNNNNNNNN ......................... ATGCGTGGGAGAGGGCCGAGAACACGGTGAAGGCGTACAA 1256673 25 100.0 44 NNNNNNNNNN ......................... GGTGGAGATGGGGTGGTAGAGGTGGTGGTAGCAGTAGCAATCCC 1256742 25 100.0 39 NNNNNNNNNN ......................... CGAAGACTTCGAGCACCTCGATCTTCCTCGCCTCTCCCG 1256806 25 100.0 34 NNNNNNNNNN ......................... GGGGCGATGCCCCGCTTCGCCCACATCAAGAAGG 1256865 25 100.0 40 NNNNNNNNNN ......................... ACGGTATCAAGAACGTGTCCTTCAGCGAGCCCTTACCCCC 1256930 25 100.0 38 NNNNNNNNNN ......................... AACGAGCTACTGAACAAGCTGGCGCAGGAAAAGCTGGA 1256993 25 100.0 41 NNNNNNNNNN ......................... AGTGTGGGACGCTGTCCAGAAACGTGCACCTGTTGAAATAA 1257059 25 100.0 39 NNNNNNNNNN ......................... CCAAGTCGAACGTGAAGAGGGAGGCGGCGAGGGCTATGG 1257123 25 100.0 39 NNNNNNNNNN ......................... TCTTCTCCTCCACGGCTTCTAGGAAGTCGTGCGCCTTGA 1257187 25 100.0 38 NNNNNNNNNN ......................... GAACGCCGAGCCGTCCGCGGTGCCTATCCTCACCTCCT 1257250 25 100.0 37 NNNNNNNNNN ......................... CCGGCGATGCGCCTCGTGGAGCTGTCGCGCGAGATAG 1257312 25 100.0 39 NNNNNNNNNN ......................... CTCCCCAGGACGCCCCCCTAGCAAGCAGCTCGCCGGTAG 1257376 25 100.0 40 NNNNNNNNNN ......................... AACTCGAAAAACTGGAGCGGTCGCTCGCGCGCCTAGTACC 1257441 25 100.0 39 NNNNNNNNNN ......................... CCGCTTAACAGTTCAAGCCCTACTTTTTGAGATAATGCT 1257505 25 100.0 42 NNNNNNNNNN ......................... TTACCCTCTTCGGCTGTGCTACGCCCTCGCAGGGTATAACCA 1257572 25 100.0 38 NNNNNNNNNN ......................... TGGCTGGTCACGAACATACATTACATCAGCCCAAACAT 1257635 25 100.0 37 NNNNNNNNNN ......................... GCGGAGGAGGAGTACGGCAAGAGCTACGAGTACTTCA 1257697 25 100.0 38 NNNNNNNNNN ......................... GAACGGGTCTTCCCAGTTGATCCCATACAGCAACTTGA 1257760 25 100.0 38 NNNNNNNNNN ......................... TCGACGAGGTATTCGACGAAAACGTTAAACGCTTCAAG 1257823 25 100.0 55 NNNNNNNNNN ......................... CTGCTACTCAAAAGGTTGCTTGAGGAGGAGCGTAGGAGGAGGAACAACCCCCACC 1257903 25 100.0 40 NNNNNNNNNN ......................... TAATAGACAACGCGCTCAGCGCCGTGGTGAACTACGGACT 1257968 25 100.0 39 NNNNNNNNNN ......................... AAGCCGGAGATCGAAATCCCCCCTTCTGGTGTTGTTGCG 1258032 25 100.0 39 NNNNNNNNNN ......................... ACACGTAGCTGTTGTGCCTGGCGTCGCCGGGCGGCCTGA 1258096 25 100.0 40 NNNNNNNNNN ......................... CTCCGGCGTTCAGCTCCATCAGCTTCTCCAGGTTTAGCTC 1258161 25 100.0 40 NNNNNNNNNN ......................... TAAGCATGGCGGGCGGCCCGAAGTCCTCCACCTCGCTGAA 1258226 25 100.0 39 NNNNNNNNNN ......................... AGTTTTTCATCGAGATCTACGGAACTCCCTTGTCTTCGC 1258290 25 100.0 41 NNNNNNNNNN ......................... GGGGCGAGCTTCAGAAAGATAAGGATGACGACAAACGTGAG 1258356 25 100.0 1 NNNNNNNNNN ......................... NNNNNNNNNN ========== ====== ====== ====== ========== ========================= 35 25 40 CTTTCAACTCATTCGTTGTTGATAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis suggestion: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [43.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [204,487] Score: 0.18/0.18 # # Final direction: R [0,0.86 Confidence: HIGH] >NC_008698 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 1269389 24 100.0 36 AACCCCCTCA ........................ AGCAAATACTCCCAGATATCCATGTCATCTTTCCTG 1269449 24 100.0 36 ATCTTTCCTG ........................ TCAAGAAGCTCGCTTACACGCTCATTAACAACGTCT 1269509 24 100.0 36 AACAACGTCT ........................ TGGACGTTTACGGGCCGGAGGTTGACCCTGAGGCAA 1269569 24 100.0 31 CCTGAGGCAA ........................ TGGAGAAGAGTTGCTTTGCAATAGTGAACAC 1269624 24 100.0 34 TAGTGAACAC ........................ CACCGGGTTTTAGCACAAAGCTTGGCATAAAAGC 1269682 24 100.0 41 GCATAAAAGC ........................ CCTGACAGCCGGCGTTAGAAGCAAAACCCCGACCGCGTACC 1269747 24 100.0 32 ACCGCGTACC ........................ CCAACGTAGTTTTACCCACACCTGTATCGGCG 1269803 24 100.0 31 TGTATCGGCG ........................ TAGAAAAGGTGCCGGTCGATAAGGGCAAATA 1269858 24 100.0 35 AGGGCAAATA ........................ AGAAAGATAACGTTAAGACGTAATATAAACGTTAG 1269917 24 100.0 37 TAAACGTTAG ........................ ATGGACTCGTACTCTACCCTGCTAACAGGGTACTTCC 1269978 24 100.0 35 GGGTACTTCC ........................ AAAAGAAAACAACAACAAAAAAAGAAAAGGTTTAC 1270037 24 100.0 34 AAAGGTTTAC ........................ TTACTTCGTCTAAATCTCTCTCTCGCGCGCGCGA 1270095 24 100.0 32 GCGCGCGCGA ........................ GCGCATGTGGCCGCCGAGCTGTTGCGCCGTTT 1270151 24 100.0 37 TGCGCCGTTT ........................ GGGGTCACCCGGGAGAAGGTCTAGCTCAGAGAGTATT 1270212 24 100.0 38 AGAGAGTATT ........................ AGGTCGAAATGGTTATCATTGAGCAGCATCCGCAATAG 1270274 24 100.0 39 TCCGCAATAG ........................ GAATGAACGTCGTCTTTCCGCAGCCTGTTGATCCTATGA 1270337 24 100.0 36 GATCCTATGA ........................ AGGCGCAGTACAATTCGTGGCTAGAATCGCGGCTAG 1270397 24 100.0 33 TCGCGGCTAG ........................ TGCACAATGGGTACGCAAACCTCCTAGAAATTT 1270454 24 100.0 37 CTAGAAATTT ........................ TAGCGCTCCTCGCGGCTAGCTGTTTCCTCACGTTCAC 1270515 24 100.0 32 TCACGTTCAC ........................ TGCTTATCGTTTCAAGAGCGCCGCACTTAGTA 1270571 24 100.0 37 GCACTTAGTA ........................ AACCATGCGAGGTCTAACCCGTAGTTGACTACTGCGC 1270632 24 100.0 36 ACTACTGCGC ........................ CTACTAGGGGAGAGCGCGAGAGAGGTAAGAGAGCCT 1270692 24 100.0 34 AAGAGAGCCT ........................ AACCTGAGGGGCCATGCGATGCTTGAGACGCCGT 1270750 24 100.0 37 GAGACGCCGT ........................ GAGGCGGCGTTGAAGAGGTCGCCGAGGTCTAGCGCTA 1270811 24 100.0 41 TCTAGCGCTA ........................ GTGAGCTCGGCGCGTTTCCCCTCCTTCCTCGGCTCTCCCTC 1270876 24 100.0 41 GCTCTCCCTC ........................ CGCAGACGCTGAGGGACTGGCTCCAGAACGGGTTACCTTCG 1270941 24 100.0 GTTACCTTCG ........................ GCTTAATTTT ========== ====== ====== ====== ========== ======================== 27 24 35 GTTCAAAATCAGCAAGACTAAGAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.50%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [46.7-50.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [308,357] Score: 0/0.18 # # Final direction: R [0,0.37 Confidence: MEDIUM] >NC_008698 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 1260197 24 91.7 36 AAGCCCCACG -............C.......... GGGCGAATCCCAGTCTATCGACGGGTCAGGGATACT 1260257 24 100.0 39 CAGGGATACT ........................ TAGCGCTCGCAAGGCATGCGCAAACGAAGGTCGTCATGG 1260320 24 100.0 41 GTCGTCATGG ........................ ACGCCGCCGGTCTACGAGGTCAGGCTAGCCGCACTGCTACA 1260385 24 100.0 37 CACTGCTACA ........................ TGTATGATAAAAGAATTCACGTCCCGATCCACGTCAA 1260446 24 100.0 33 TCCACGTCAA ........................ ATACGGGGTCGTCCCTCTGCGCGGCGAGCTTGT 1260503 24 100.0 36 GCGAGCTTGT ........................ TTGTCCCGTACGGATTCGGCGCGCTCATGCTCGCGC 1260563 24 100.0 33 ATGCTCGCGC ........................ TCCTAAGGCTTGCCCCATTTTGCGCGGACATCC 1260620 24 100.0 GCGGACATCC ........................ TGAGGGGTTT ========== ====== ====== ====== ========== ======================== 8 24 36 CTCTTAGTCTTGCTGATTTTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.50%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [35.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [29,228] Score: 0.18/0.18 # # Final direction: R [0.37,0.86 Confidence: MEDIUM] >NC_008698 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 1271260 24 100.0 36 NNNNNNNNNN ......CA................ AGAGCATGGAGAAAGCCGAGAAAAGTAAAGAAACCT 1271320 24 100.0 33 NNNNNNNNNN ........................ ACGCTTCCCAATACGCGCGCGGCACGCTCAGCG 1271377 24 100.0 36 NNNNNNNNNN ........................ GAGCTCAATACCTCACTCTGTACGTCCACTGCTCGC 1271437 24 100.0 35 NNNNNNNNNN ........................ ACAAGCTCGACGCCGTTTTGGTCCCGTCCGGCTTC 1271496 24 100.0 55 NNNNNNNNNN ........................ GTGTGCATGTATGGTTTATTACTAATTCTTTTGAGCCGGACAACACGGACAACTT 1271575 24 100.0 37 NNNNNNNNNN ........................ TGGTCCTCCTGTCCACGTTGGGGGGCGGGGCGAGCTT 1271636 24 100.0 34 NNNNNNNNNN ........................ ACGCACATAGGCGCGGTGATGCTGTGGAGGAGGC 1271694 24 100.0 34 NNNNNNNNNN ........................ GGCTTCTGCACGAAATAGTGCCAAAACGTTTGCT 1271752 24 100.0 38 NNNNNNNNNN ........................ GAGGCGAAGGGGTTGGGCTTTTTCTTAAAGCTTGAGGT 1271814 24 100.0 40 NNNNNNNNNN ........................ TGAAGAAACGGGACTACCCGCACGCGAAACATGGCTCGCG 1271878 24 100.0 33 NNNNNNNNNN ........................ GCGGCCTCCAGTTCCATGACGCGTAGACGTCCC 1271935 24 100.0 39 NNNNNNNNNN ........................ TCGATCCTTCAGCGCGCCGTGTGGTTACGCGCATAAAAT 1271998 24 100.0 32 NNNNNNNNNN ........................ TTGACCCTGCCCAGCGTCGTGTGCTAGCCAAG 1272054 24 100.0 37 NNNNNNNNNN ........................ ATTGACGGATTGCTCGCGCGCGTTCACGCACTCACAC 1272115 24 100.0 35 NNNNNNNNNN ........................ AGATGAACGAGAGGTCTGGCCCCAGAATAAGAGTA 1272174 24 100.0 36 NNNNNNNNNN ........................ TGTAGCCGACGTACACGATGGCCCCCTCCGGGGCGG 1272234 24 100.0 34 NNNNNNNNNN ........................ ACGTAGACCCTGAAGCCGAGCTTCCTGAGCCTCC 1272292 24 100.0 38 NNNNNNNNNN ........................ TGAGAAAAATGAAAGCAGAATTCAGCGTTTCAAAATCA 1272354 24 100.0 35 NNNNNNNNNN ........................ TTCGACCTCCTCCTCGGGCACCTCGACGGCATGGA 1272413 24 100.0 35 NNNNNNNNNN ........................ GCGCCGTAATCGTGAAGGCGCTGTCGCAGACCCTC 1272472 24 100.0 34 NNNNNNNNNN ........................ AGGCTCTGGCACGGTTTTTGGCTAGGCGGCTTTA 1272530 24 100.0 40 NNNNNNNNNN ........................ ACGCGTGGTTGCTCCTAGCGGACGTTGTTTCGCGCAACAG 1272594 24 100.0 31 NNNNNNNNNN ........................ AGATAACTCGCTATCTGAACCAGAATCTCGT 1272649 24 100.0 35 NNNNNNNNNN ........................ TAGCGGGTACGGGTGTAGCACGTGCGCGTTGCTTA 1272708 24 100.0 42 NNNNNNNNNN ........................ TCGCTCTTACTTGCGCACTCTTTGAGCGCCATCTCCCTTATC 1272774 24 100.0 37 NNNNNNNNNN ........................ CCGCGGCGACTACTTCTCCTCGCGGCTCCCCAGGCTC 1272835 24 100.0 35 NNNNNNNNNN ........................ GTTATGGTTAAGAGGTCTGAGGAAGTGGTTAACAT 1272894 24 100.0 34 NNNNNNNNNN ........................ TAAAAGATTTATACATGTGGTGTGTAAACTATCA 1272952 24 100.0 35 NNNNNNNNNN ........................ ACGCTGAAACGTGCACGGCAAATAATCGACGACTA 1273011 24 100.0 37 NNNNNNNNNN ........................ CGACCCAAAATGAGCACGAGATTGATAGACCTGCACA 1273072 24 100.0 39 NNNNNNNNNN ........................ GCCGGTGTACCAGAGCCTGATGCAACGATAATGTCCCTT 1273135 24 100.0 34 NNNNNNNNNN ........................ GTGGCGGCGACGGGACAGACGCTTTACGCAAGCG 1273193 24 100.0 33 NNNNNNNNNN ........................ TGGCCGGGGGAATCAGCGTTGAAGAATTCTTTA 1273250 24 100.0 36 NNNNNNNNNN ........................ GTGGACCTGACCTACCGATGCCGTGGGCAAAGGAGG 1273310 24 100.0 1 NNNNNNNNNN ........................ NNNNNNNNNN ========== ====== ====== ====== ========== ======================== 35 24 36 CTCTTAGTCTTGCTGATTTTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.50%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [296,294] Score: 0/0.18 # # Final direction: F [0.64,0.41 Confidence: LOW] >NC_008701 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 103 25 100.0 44 TGAGAGTGGC ......................... TTCCATGTTCTGTTGCCGTGTGAGATTCCAGCATCACAGCTGAG 172 25 100.0 41 CACAGCTGAG ......................... CGGCGGGAAGTCCGCTGTCGAATTGCTGACCGGGGAATATG 238 25 100.0 41 GGGGAATATG ......................... CGGCGGGAAGTCCGCTGTCGAATTGCTGACCGGGGAATATG 304 25 100.0 45 GGGGAATATG ......................... ACCTCGTTAGTAAAGCAACGAAGAAAATGGCACAATAGAACCTAT 374 25 100.0 44 TAGAACCTAT ......................... ACGATTGTGTTTAACCCGGCGCCGTATCCAACAGAGCACATATG 443 25 100.0 43 AGCACATATG ......................... TTTAGGGTCGGTAGCGGAGCGGAGACGGGCGACGGCGATCAAG 511 25 100.0 43 GGCGATCAAG ......................... GTACCCGTGGGCAAGCGAATATTGGGCTATGGGGCTGTATAGA 579 25 96.0 44 GCTGTATAGA ........C................ CAAGAACTCCGCGGCAAATATGTAAAGTTGCATATCATTGATCT 648 25 100.0 49 TCATTGATCT ......................... TCACACTGTCTGTGGTGAGAGTACTTTAAGCCCCCCAATAGTTTCTACA 722 25 68.0 44 AGTTTCTACA --------................. GCCCTCAGGGCGGTTTCGGCGTCCATCATGGCGACCAGCTCGTC 791 25 100.0 44 CCAGCTCGTC ......................... CTCTCTGCAGAGGACAGACCAAGGCTTGTCGCTCCAGATGCAAC 860 25 100.0 44 CAGATGCAAC ......................... TTCGTGCGGACGCCGTGTAGCTTCCTCGCGAGCGAGAAGTTTGT 929 25 100.0 44 AGAAGTTTGT ......................... ATGCTAAGGCGGGCGCCAGGTTTGCGGCCGGCGGCACCGTGGAG 998 25 100.0 41 CACCGTGGAG ......................... CCTTAACCACGTGGCCCACGATGTCAGTCCCGATAATGTTG 1064 25 100.0 42 GATAATGTTG ......................... CGTGGCGGCCCTCCTCAGGGCCCTCCGCCATGAGATAGACAT 1131 25 100.0 44 AGATAGACAT ......................... AAGAAGCGCGACGTCTGGCACAGATAGACGAGATAATACACTCA 1200 25 100.0 AATACACTCA ......................... GGCTTGTGTT ========== ====== ====== ====== ========== ========================= 17 25 43 GTTTCTACTATCTTTTGATTTCTGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.00%AT] # Reference repeat match suggestion: R [matched GTGGAAATCAAAAGATAGTAGAAAC with 88% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [45.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [104,269] Score: 0.18/0.18 # # Final direction: R [0,0.95 Confidence: HIGH] >NC_008701 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 1404032 25 100.0 42 GACACAAGCC ......................... CAGAACACGTCTGGGAATATCATGATGTCCTCCAGTTCCCAA 1404099 25 100.0 44 CAGTTCCCAA ......................... TCAAAAAAGACGTGCTTGTCAGAGTACCCAACTATCCCCCTCCT 1404168 25 100.0 TCCCCCTCCT ......................... ATCATGTGCA ========== ====== ====== ====== ========== ========================= 3 25 43 CCAGAAATCAAAAGATAGTAGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.00%AT] # Reference repeat match suggestion: F [matched GTGGAAATCAAAAGATAGTAGAAAC with 88% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [267,914] Score: 0.18/0.18 # # Final direction: F [0.5,0.18 Confidence: MEDIUM] >NC_008701 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 1413797 25 100.0 43 GACAGATCCG ......................... CCGCGATGGCCGGCTTCGCCCTCCTCCAGGCCTGGAAGGCGAG 1413865 25 100.0 43 GGAAGGCGAG ......................... AGGGCGTAATCGTCTCTCTCGAACAGATGGCCTTTATGACGTC 1413933 25 96.0 45 TTATGACGTC ........................A CGCGGTCTTCAACGCGGTTCAGTCCGGCCAACTCCCAGCCTTGCT 1414003 25 100.0 CAGCCTTGCT ......................... GGCTCGTATTTTCGGATCTTT ========== ====== ====== ====== ========== ========================= 4 25 43 GTTTCTACTATCTTTTGATTTCTGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.00%AT] # Reference repeat match suggestion: R [matched GTGGAAATCAAAAGATAGTAGAAAC with 88% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [98,1436] Score: 0.18/0.18 # # Final direction: R [0.41,0.95 Confidence: MEDIUM] >NC_008701 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 1756971 25 100.0 45 NNNNNNNNNN TC..A.CT.T............... TTCTTTCTGTTCCGCCGCGTTATGACCAAGATATTGTACCAGATG 1757041 25 100.0 51 NNNNNNNNNN T..CTACTATA.............. CATCCCGCCGGCTGAGGTTAAACCGCAACCTGCGCTTGTCTATGCGCTTGA 1757117 25 100.0 45 NNNNNNNNNN ......................... CCCAGGCGGAGGCCGTGAGCGCAGTCCTCATGCCACGCGTTTGAG 1757187 25 100.0 44 NNNNNNNNNN ......................... ATCGTAGAGATAAGTGCGGCACTAGAAGATGCAATGATGCTGTT 1757256 25 100.0 41 NNNNNNNNNN ......................... GTCTGAACAGGGTCTTCGTGGTGGTGCCCCGCCACATAGCT 1757322 25 100.0 47 NNNNNNNNNN ......................... CAGAGCCGCCGGGGACTGCCCCCCCCCGGCGACCACTCGAAGAGGCC 1757394 25 100.0 41 NNNNNNNNNN ......................... CCTGGACGTCATATACATGTGCCAGGGAGGGAGAGTATACG 1757460 25 100.0 42 NNNNNNNNNN ......................... GCACCTCCTGCGGTGGGCGGTTAAGCGGTTGCAGAAAGACAA 1757527 25 100.0 42 NNNNNNNNNN ......................... ACAGCCCGGCGTGCCCCAGTCTTTGTCGACGCAGACTACCGC 1757594 25 100.0 44 NNNNNNNNNN ......................... AGTGCGGCTCCCAAGTCCACGGGTCGCGGTACATGTTGCCGAAG 1757663 25 100.0 45 NNNNNNNNNN ......................... TGCCATGGGGGGACAGTCGTCGTCCTCTTCACGTCTGATGGATAT 1757733 25 100.0 44 NNNNNNNNNN ......................... TCGACGACATCCGCCACAGCGACGGTGGCGGTTAGGGGCATACA 1757802 25 100.0 45 NNNNNNNNNN ......................... GCCACTTACAGGCGTGATTATTGCGAAAGCGCCTAGGTGGTCTAG 1757872 25 100.0 42 NNNNNNNNNN ......................... GAAAAATTGGTAGTGAAGGGGAGGATGGCCAAAGAGCTTATG 1757939 25 100.0 44 NNNNNNNNNN ......................... GGCAGTAGTGAAAACCAGGGGTTAATAAACGTTTCGCCCTTGAG 1758008 25 100.0 45 NNNNNNNNNN ......................... GGTCTTGGGGAGCGGCACAGCGGCCAACTCCGCCAAGGCCCCCAC 1758078 25 100.0 45 NNNNNNNNNN ......................... CCTCATCTCCCGCAGGGCGTGGTACCTCGCGATGGCGGTGACTAG 1758148 25 100.0 41 NNNNNNNNNN ......................... CTGTTGACCTTCCCGCTGTCTAGAAATGAGTACGAGGGCCT 1758214 25 100.0 42 NNNNNNNNNN ......................... CAATCACTGAGCTGACGACTGAGTAATCGCGGAGATAACATT 1758281 25 100.0 43 NNNNNNNNNN ......................... CGTTATCCGAAAGGAGGATGCTGTAAAAGTAGCGCGGTATCTT 1758349 25 100.0 46 NNNNNNNNNN ......................... AGCTATATTCCTACTAGTTGAAGCGCGTAAACTCATTAAGAGTGTG 1758420 25 100.0 42 NNNNNNNNNN ......................... ACCAACTATCCTTATCGGCTGTCCCACGGCGTACCTCGGCTC 1758487 25 100.0 44 NNNNNNNNNN ......................... ATGCAGTACCTCGAGACTACGCCGCGTGTCTCGCCGTGATTAAG 1758556 25 100.0 39 NNNNNNNNNN ......................... CTTTGCCACTGCTTCAAATATCACCTTTGGCAAGCCTCT 1758620 25 100.0 38 NNNNNNNNNN ......................... GCGGACATAGTCGAGCCAGACGAGCGTAACTCGATAAC 1758683 25 100.0 41 NNNNNNNNNN ......................... CCACGTGATTATTACACCGAGGATTTAGCAATGATGTTACG 1758749 25 100.0 40 NNNNNNNNNN ......................... GCCTGGCAACAGAAGTGGCCCCCGTAGTCGGGAAAGTGCT 1758814 25 100.0 44 NNNNNNNNNN ......................... GTGACAGCTGTGACCCAGCCGCTTGCCCACGTGCCCTGTAAGAA 1758883 25 100.0 43 NNNNNNNNNN ......................... TCGTGGAACGTGTCGAAGCTAGGTGAACATGCCCTGTAGAGAT 1758951 25 100.0 45 NNNNNNNNNN ......................... GTAGTCAACTGGCTCAGAGGCCTCATTTAAGCCCAACTTAGTCCT 1759021 25 100.0 44 NNNNNNNNNN ......................... TACATCTGGCGCGCACGCTGTTGCCGGGGCTGTACATTATGCAA 1759090 25 100.0 47 NNNNNNNNNN ......................... TCTAAACTCTACGCTCATGCCACCTCCTCGGGTTTGTTTTTCAGTAG 1759162 25 100.0 40 NNNNNNNNNN ......................... CTGGCATAAAGTTCAACTGAACGGGGGCCATTGGGTAATC 1759227 25 100.0 44 NNNNNNNNNN ......................... TCAGGACTGGGACAGGGCCCAGGCACCGACGCAGGCCAGGGCCC 1759296 25 100.0 44 NNNNNNNNNN ......................... GCCGATCTTCTACGCCGTCTTACCCCAAGCCGATGTTGGAGCTG 1759365 25 100.0 42 NNNNNNNNNN ......................... CGCGCGTAGTCCACGTAGCCGAAGAAGTCGTACATGTGGGGA 1759432 25 100.0 1 NNNNNNNNNN ......................... NNNNNNNNNN ========== ====== ====== ====== ========== ========================= 37 25 43 GTTTCTACTATCTTTTGATTTCTGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.00%AT] # Reference repeat match suggestion: R [matched GTGGAAATCAAAAGATAGTAGAAAC with 88% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [396,258] Score: 0/0.18 # # Final direction: R [0,0.91 Confidence: HIGH] >NC_008698 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 1281906 24 100.0 38 AGAGTCCTCT ........................ AAGAAGCAGGGATCCCCGCACGCGAGGCATGGCTTACG 1281968 24 100.0 33 ATGGCTTACG ........................ TGACTTAGACATCAATTTCACTGAGAGGTGTCT 1282025 24 100.0 34 AGAGGTGTCT ........................ GAATTGGACACGAGCTTCTTCTCTGGTTGCCGGC 1282083 24 100.0 36 GGTTGCCGGC ........................ TGTGGGCCCTCCTGCCGACCCGGAACACTACCTCTA 1282143 24 100.0 39 ACTACCTCTA ........................ AAGGAAAGAAGAAGCTCTGGAGCAGGTATTCGACGGGCT 1282206 24 100.0 37 TCGACGGGCT ........................ GAAGCACCGAAAGATCTGCTGTGGATTCTCAAGTTAG 1282267 24 100.0 42 CTCAAGTTAG ........................ CGGCGTTGAGAAGATTGCGAGCCTAATGAGCAGACGTCACGT 1282333 24 100.0 33 GACGTCACGT ........................ CGTCATAGCGGTAAAGCTGGCGAGGAGGGTCGG 1282390 24 100.0 GGAGGGTCGG ........................ TGAGGGGGTT ========== ====== ====== ====== ========== ======================== 9 24 36 CTCTTAGTCTTGCTGATTTTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.50%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [176,401] Score: 0.18/0.18 # # Final direction: F [0.64,0.18 Confidence: MEDIUM] >NC_008698 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 1324028 25 96.0 54 GGTGCGTCTG ....T.................... TAAAAAATCACGTTGGAAGAGGTGCGGACGTATGAGCTTTTTGTTTACGTTCGG 1324107 25 96.0 39 TTACGTTCGG ....T.................... GTGACCTCGGCGCCGAAGCCCGGCCTCAGCAACTTGAAC 1324171 25 100.0 40 CAACTTGAAC ......................... GGCCTACGCCGTGACACAGCTGGTGTTCTACGTGGCAGAC 1324236 25 100.0 46 CGTGGCAGAC ......................... GAGGGTAAGGTTGTCTAAGAGCGGGACCCACGGCGAGGAATACTAC 1324307 25 100.0 38 GGAATACTAC ......................... CCAAGTTCTCTTTCAATTGTTTTCCCGTTGAATCGGAT 1324370 25 100.0 43 TGAATCGGAT ......................... CGATCCTAGCTGGCTTGGTGAGCGGTGAGCCCACGATACTGAT 1324438 25 100.0 42 CGATACTGAT ......................... AACTTCTTGGAGCGCGGCAGGAAGCTGGAGTCCTTCGTGCGG 1324505 25 100.0 CTTCGTGCGG ......................... CGACCATTTT ========== ====== ====== ====== ========== ========================= 8 25 43 CTTTCAATGCTTTCACAGTTGCTTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [40.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [132,247] Score: 0/0.18 # # Final direction: R [0,4.77 Confidence: HIGH] >NC_008698 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 1315223 25 100.0 46 AAAGTGGTCG ......................... AGAAGCTTAGGTTCTACATTCTCGTCGCGCGCGTGAGAGATGGAAA 1315294 25 100.0 38 GAGATGGAAA ......................... GACGCCGAGGCGAGCCGCCTCAGGGCGTCGTTCGTGCC 1315357 25 100.0 47 CGTTCGTGCC ......................... GACAGGGAGTTGCCGCTCACGCGCAACCCGCGCTCCGCGAGCGCCGC 1315429 25 100.0 39 CGAGCGCCGC ......................... GGGGCGTCACGGCTTACACCCCGCGTATCCTTTCGAGGA 1315493 25 100.0 50 CTTTCGAGGA ......................... TTTCGTAGTCCGCACAGTGGCCATGTGAATTCTCTTGATAATTCCATGCA 1315568 25 96.0 ATTCCATGCA ........................A ATGAAAATG ========== ====== ====== ====== ========== ========================= 6 25 44 GAAGCAACTGTGAAAGCATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [303,108] Score: 0.18/0.18 # # Final direction: F [5.09,0 Confidence: HIGH] >NC_008701 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 38866 24 100.0 44 CAAACAAGCC ........................ GCTCCTGCTCGGATGCAGAAGGGACTCGGACGGGCGTGTCGTCT 38934 24 100.0 44 CGTGTCGTCT ........................ GTATGCTCCGGGCTAGACGGCCTCCCCGAGCCCGTGCGGGCGAG 39002 24 100.0 44 TGCGGGCGAG ........................ GTCGCGGTAGCACTGGACGACTGTGTCCCACCCACGCTCCTCAG 39070 24 100.0 39 CGCTCCTCAG ........................ GCAATCGCGTCCATAACCGCCCGCCAGTCCTCGTCGCAC 39133 24 100.0 44 CTCGTCGCAC ........................ CGCCGCCATCGCGATAGCGTACTACGCAGGCGTCAAGAGGGGCG 39201 24 100.0 45 AAGAGGGGCG ........................ CATAAACAGACGCCGCCCTTCTGGTGGCTCCCCGTCGACCTCTGG 39270 24 100.0 46 CGACCTCTGG ........................ CTCTGTAATCAACTCCTCCAGACCATACCTCCTCAGCAATCTGTAG 39340 24 100.0 44 CAATCTGTAG ........................ CTACGTCTCGTGGAGCGGGGCGAAGCTAGGCACATACGTCGTCA 39408 24 100.0 39 TACGTCGTCA ........................ CCTCCAACAGGTGGGGAGGTGGGAGAGGGACATGAACAA 39471 24 100.0 ACATGAACAA ........................ CTTAATATAGA ========== ====== ====== ====== ========== ======================== 10 24 43 CCAGAAATCAAAAGATAGTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.83%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [258,447] Score: 0/0.18 # # Final direction: NA [0,0 Confidence: NA] >NC_008701 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 39540 24 100.0 52 AACGTTTATT ........................ CGCAAACGTAGTGAAGACCGCGGTCATCGGGAATGGCGGTCATGCTTGCGCT 39616 24 100.0 41 TGCTTGCGCT ........................ CCCTCTTCTAGCTCTCTGTCTAGGTCTTGAAGAAATTCGGC 39681 24 100.0 45 GAAATTCGGC ........................ TGCCCACTCCATAGACCATATCAGTTGTCTTTCCGCCATTATCTG 39750 24 100.0 44 CCATTATCTG ........................ CGGGGCGTCTGAGACGTCTATCACGACGGGGACAGACGTAATGT 39818 24 100.0 GACGTAATGT ........................ CATGTATATG ========== ====== ====== ====== ========== ======================== 5 24 45 CCAGAAATCAAAAGATAGTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.83%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [932,100] Score: 0.18/0.18 # # Final direction: F [0.18,0 Confidence: MEDIUM] >NC_008750 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3946758 28 100.0 32 NNNNNNNNNN ............................ CGCGCCAAAGTTGTAAATTAGGCTTAGGTACG 3946818 28 100.0 32 NNNNNNNNNN ............................ TCCTCCATTTGTTGTTGATGTAGTTATTACTT 3946878 28 100.0 32 NNNNNNNNNN ............................ TGTGTCAGTAAAAGTATCAGGCATTAATTCAG 3946938 28 100.0 32 NNNNNNNNNN ............................ GACATGAGAGTATAGTTCCCGTTTAGCTTGTG 3946998 28 100.0 32 NNNNNNNNNN ............................ ATAAATTCACCTTAACCAAGTTCGCGCCATTT 3947058 28 100.0 32 NNNNNNNNNN ............................ TGAGACTTAAACCATTGCTCGCCCCAGAACGA 3947118 28 100.0 32 NNNNNNNNNN ............................ TGCTAGGTCGTTGGCATAGTGTTTTGGCTAAG 3947178 28 100.0 32 NNNNNNNNNN ............................ ATTAAATTCATTAGCAGTAACATAAACCTCGA 3947238 28 100.0 32 NNNNNNNNNN ............................ TTACTTAGCACGACTCGCCGTAGTTCTCAGCG 3947298 28 100.0 32 NNNNNNNNNN ............................ TTAACACGAGCGTGAGCGGCGTCACCATAGCG 3947358 28 100.0 32 NNNNNNNNNN ............................ TTTACCGTTTCTTTGGCTGCTGCAATCTTCTT 3947418 28 100.0 32 NNNNNNNNNN ............................ CAAGTGACACACAGCAGACGAAACAAATTCAA 3947478 28 100.0 32 NNNNNNNNNN ............................ ACGGAGTTTAAATCTGCATACTTAGATTTAAA 3947538 28 100.0 32 NNNNNNNNNN ............................ ACCAAAGGCGGCATCATGTGGCGAGTAAATAC 3947598 28 100.0 32 NNNNNNNNNN ............................ TCCATGCGAAGGGTGACATCCAGCGACAACAA 3947658 28 100.0 32 NNNNNNNNNN ............................ AATGTACCGCGACCATCGATACCATACGGATA 3947718 28 100.0 32 NNNNNNNNNN ....T....................... AGTGCCATCGATGGCGCAAGATAATAGCGACC 3947778 28 100.0 1 NNNNNNNNNN ...............A....T.....TG NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 18 28 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [235,797] Score: 0.18/0.18 # # Final direction: F [1.92,0.18 Confidence: HIGH] >NC_008709 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1948487 29 100.0 32 NNNNNNNNNN ............................. GTTATAGATTGGCGGGGGGATTCTAGGGACAC 1948548 29 100.0 32 NNNNNNNNNN ............................. ACAAATTTTGTGCGGCTTGACCTGCTTTGCGG 1948609 29 100.0 32 NNNNNNNNNN ............................. TAAAATCACAGAGTCATGGTTCGCTGGTCCTC 1948670 29 100.0 32 NNNNNNNNNN ............................T CGCGTTGCCGCCGTAAAAATGGTTATCATAGT 1948731 29 100.0 32 NNNNNNNNNN ............................. CCTTTTAACTTCGCTCTGTGTTCTGGATTGGT 1948792 29 100.0 32 NNNNNNNNNN ............................. TGATGATTGGCTTGATATTTTGGCACGTTGGC 1948853 29 100.0 32 NNNNNNNNNN ............................. TTAATGCAAGGCCACAACGTTTTTGGATCATG 1948914 29 100.0 32 NNNNNNNNNN ............................. CCTTATTAGTTATTTAATTAATATATTTAATA 1948975 29 100.0 32 NNNNNNNNNN ............................. CTTAGAGCGCGGAATGTATTAGAAAGTAAAAA 1949036 29 100.0 32 NNNNNNNNNN ............................. TGCAATCTATCGAATCTATGAACACTGAAGCA 1949097 29 100.0 32 NNNNNNNNNN ............................. CTCTTTCTGCCTTGGCAAGTTCTGCTAATTCT 1949158 29 100.0 32 NNNNNNNNNN ............................. CTTATGTGATGCTTTCCAGTAATCGCCTAATA 1949219 29 100.0 32 NNNNNNNNNN ............................. CATGAAATATATGAGAGAAAATCCGCCAAATC 1949280 29 100.0 32 NNNNNNNNNN ............................. TTGCGAACAGTTGAAGATTATCAGCTATCAAA 1949341 29 100.0 32 NNNNNNNNNN ............................. GGTAATAATAGTTTTTTTAGTTCAAACTGTTG 1949402 29 100.0 32 NNNNNNNNNN ............................. GTGATCATTTCAAATGGCACTACATCACCACT 1949463 29 100.0 32 NNNNNNNNNN ............................. TGCAGACATAAAATCATGTGGTTGTGGTAATG 1949524 29 100.0 32 NNNNNNNNNN ............................. CGCGATATTTATTAATCTTTTGTATTGAAAAG 1949585 29 100.0 32 NNNNNNNNNN ............................. CATGAACACGCACTATTGATGATTATAGCACC 1949646 29 100.0 32 NNNNNNNNNN ............................. CTGGCTATACACTGTAAACGTTATGCAAAAAT 1949707 29 100.0 32 NNNNNNNNNN ............................. CAATATAACTATTAAAAACCAATCCCAATCAT 1949768 29 100.0 33 NNNNNNNNNN ............................. CGTAAAATGTTCCGGTTTAATTGCTACATTAGA 1949830 29 100.0 32 NNNNNNNNNN ............................. TGCCATTTTAGGCGCTCTAACGCTGCCGCTTT 1949891 29 100.0 32 NNNNNNNNNN ............................. CAAGCGTGCCTGATTTGAATATTGATCAGACA 1949952 29 100.0 32 NNNNNNNNNN ............................. CGTTCATTCCGCGATACACGCGCCTTACGATA 1950013 29 100.0 32 NNNNNNNNNN ............................. CTCTTGTGACCAAGGCACTATCGCCATGCACA 1950074 29 100.0 33 NNNNNNNNNN ............................. CCTCACCCAGATGAACATAACCAAACTGATTGT 1950136 29 100.0 32 NNNNNNNNNN ............................. TGATACTTGGTGCGGTAATCCGTAAAACTCAA 1950197 29 100.0 32 NNNNNNNNNN ............................. TAGCAGAAATAGCAGCGTAGGCAATGGATTTT 1950258 29 100.0 32 NNNNNNNNNN ............................. CTTTCAAGTCAGATCAGCCGCTTAGTTTCCCG 1950319 29 100.0 32 NNNNNNNNNN ............................. TCAGATTGTATTTTGTGAGCGTGTGCAACTGT 1950380 29 100.0 32 NNNNNNNNNN ............................. CAAAACAATTAGCAGTGATATGTTTATATAAT 1950441 29 100.0 32 NNNNNNNNNN ............................. TAAATTACAAGCCGCCAGGATGGCCTGAGACT 1950502 29 100.0 32 NNNNNNNNNN ............................. GAGCAAAAACAGAACCCGCATTTTAACGAGGT 1950563 29 100.0 32 NNNNNNNNNN ............................. GTATTGAGTTAGCAACCTGGCGAATGATGAGA 1950624 29 100.0 32 NNNNNNNNNN ............................. CCAATAACTTGATCATGGTTTTGAGCGTGTAT 1950685 29 100.0 32 NNNNNNNNNN ............................. CAAGTACAACCTGATTAAGTTTAGCGACTCTG 1950746 29 100.0 32 NNNNNNNNNN ............................. CGGTAAAGACAACAGTAATAAATCGCTGTTAA 1950807 29 100.0 32 NNNNNNNNNN ............................. TATTAAGCCATAAATTAGCAGTGGCAAATAAA 1950868 29 100.0 32 NNNNNNNNNN ............................. GTTCTCGAAAAGCTAGCAATTTGACTTAAATC 1950929 29 100.0 32 NNNNNNNNNN ............................. CAATGACAAATTAAACGTAAAAGTAGTGCACC 1950990 29 100.0 32 NNNNNNNNNN ............................. CAGATTGATGTTAATGCAATAACTGAAGATAA 1951051 29 100.0 32 NNNNNNNNNN ............................. CAGCCGACCATGGGCGATAGGAAAATATCTGG 1951112 29 100.0 32 NNNNNNNNNN ............................. ATAGGATTATGTATCAAAGATCATCAGCAGCA 1951173 29 100.0 32 NNNNNNNNNN ..............T.............. CTTCAGTCACACTGCACTGTTCCGTGTTGTGA 1951234 29 100.0 1 NNNNNNNNNN ...........A.T..............A NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 46 29 32 GTGTTCCCCGTGCCCACGGGGATGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-10.20,-10.20] Score: 0/0.37 # Array degeneracy analysis suggestion: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [79,17] Score: 0.18/0.18 # # Final direction: F [0.59,0.37 Confidence: LOW] >NC_008741 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 29677 32 93.8 35 AGGGAGAGCT ....................G..A........ ATAGCCGCTGACATCAAGCCCGCCATCAAGGTGAC 29744 32 93.8 35 TCAAGGTGAC ....................GT.......... AGGATGAGCACCGCGTTGAGGACTTCGACGCTGCC 29811 32 96.9 34 CGACGCTGCC ....................G........... CTGCTCAAAATAGGCGTGGTCCCGTCCTGCAGGT 29877 32 93.8 34 TCCTGCAGGT ...................TG........... CCAAGGCTTCAAGGTTCCTTGGGGACATCATAGG 29943 32 100.0 35 ACATCATAGG ................................ TTCTCGTTCAGCGCGTCGATGTTGCTGGCCCCCGT 30010 32 100.0 34 TGGCCCCCGT ................................ CTCGGGCCGGAGGTGGAAAAATGAGTGATTACGT 30076 32 100.0 34 GTGATTACGT ................................ TATTCCGCCCCGACGAGGGCGCGTACGACCCCGT 30142 32 100.0 35 ACGACCCCGT ................................ TGCGCCAAGCATTTCCCCTACTGGGCCGAAAAAAC 30209 32 100.0 36 CCGAAAAAAC ................................ TCACCCAAGACACACTGGACGACTTCACATTTGCTC 30277 32 100.0 33 ACATTTGCTC ................................ ACCGGCCTCGCCCATGACGCCCGCGCCCTTCGC 30342 32 100.0 34 CGCCCTTCGC ................................ CCCTGCTCAAGGGCGGCGAGAAGCCCACGAGTGT 30408 32 100.0 34 CCACGAGTGT ................................ AGAAGTTGGCCGTGGAGTCCACGCCGGCGGTTGT 30474 32 100.0 34 CGGCGGTTGT ................................ CGCCAACGGCCAATTGCCGCTGGATGCCTTCGTG 30540 32 100.0 34 TGCCTTCGTG ................................ AAATGCCGGGGTTTGCACAATTCGCCTTCTATCT 30606 32 100.0 34 CCTTCTATCT ................................ TGGAGCGGTCGCGGTCGTCAGCGGCCATGTAGGA 30672 32 100.0 34 CCATGTAGGA ................................ GGATATCGCCGCCGTATCGGACGAGGAGGCGCGA 30738 32 100.0 33 GGAGGCGCGA ................................ TTCCCCCAATATTCAGTTGGTGGTGTTCGACAA 30803 32 100.0 35 TGTTCGACAA ................................ TTGTCCATCTATCAGCACTTCCATATCCATATGCT 30870 32 100.0 34 TCCATATGCT ................................ CGTCGACGACGCGGGGCCGTACGCCTACCTTACG 30936 32 100.0 35 CTACCTTACG ................................ ATACGGCTGAGAGGTACCCTGAGGTATCCATACCG 31003 32 100.0 34 ATCCATACCG ................................ GCGGCAGGCCACGGCGTCCGGGCAACAGTGGGGC 31069 32 100.0 35 ACAGTGGGGC ................................ GAGGCGTGCAGGCATGCGCTCTATGGTCAGTTTCG 31136 32 100.0 35 GTCAGTTTCG ................................ GTGCGGGCTGCGTACCACCGCACGGAGTATCTCGA 31203 32 100.0 34 AGTATCTCGA ................................ ACCCCGGACGGAAGGGACGTATCGTATTAGTCCG 31269 32 100.0 33 TATTAGTCCG ................................ CATCGGTCAACATGTTTTGCGTATTTGCACCAC 31334 32 100.0 34 TTTGCACCAC ................................ TCTCGCGGTCGATGTGGCGCGCGGGCTGCGGCAG 31400 32 100.0 35 GCTGCGGCAG ................................ ACGACGGTTCGGCAGACATCCAGAATGCAGGGGCT 31467 32 100.0 34 TGCAGGGGCT ................................ CACCGCAGGTCTAGTCGACGCGATAGGAGACATC 31533 32 100.0 35 AGGAGACATC ................................ CCTGACACAGCATTCGGCAAGTTGGCATTCGGTCG 31600 32 100.0 33 CATTCGGTCG ................................ TTCCATGTCATCGGTACTGGCCTCCGGGTTCAG 31665 32 100.0 35 CCGGGTTCAG ................................ TGCTGCCCCACCACGGGCATTGCGGGAATATCTGG 31732 32 100.0 34 GAATATCTGG ................................ TGATGTCGCCGCTCATGACATGCACGGCCTCCGC 31798 32 100.0 35 CGGCCTCCGC ................................ GACGTGCGGTTGACAAAGATGCTCAACGACAAGTT 31865 32 100.0 35 ACGACAAGTT ................................ CCGGTCATCCCGCTCAAGGCGCTGTTCAACGACGA 31932 32 100.0 34 TCAACGACGA ................................ ATGCAAAGAAGCCACAACCCACCACTGACAAAAA 31998 32 100.0 35 CTGACAAAAA ................................ TGCCCGCCCGCTCCGCAACAGCAGGCGGCAAAGGG 32065 32 100.0 35 CGGCAAAGGG ................................ TATTCCTTCCCATCATCACCAATCCATCTTTGGGT 32132 32 100.0 36 ATCTTTGGGT ................................ ATTCCCTTGCCCACCAATTGCTACGGAGTCGTTGAG 32200 32 100.0 35 AGTCGTTGAG ................................ ACAAGCGTCGGGTCAGGGCAATCAAGCTTCGTGGG 32267 32 100.0 33 GCTTCGTGGG ................................ TGGTTCGCCTTGCCGAAGTTATCGACCATCTTG 32332 32 100.0 35 GACCATCTTG ................................ ATCCGCGTCCGCCACGACATCGATGTGCGCATGAT 32399 32 100.0 33 TGCGCATGAT ................................ GTTCGCGTACATGCTGGCATCGCACTTGTTGGA 32464 32 100.0 34 ACTTGTTGGA ................................ ATCTCACCTGCTCGAACGGTGGGCCAATGCTGGG 32530 32 100.0 29 CAATGCTGGG ................................ TTTATGTGGGCATCAAGACGGAGGCGGTG 32591 32 100.0 GGAGGCGGTG ................................ TGTCAGCCA ========== ====== ====== ====== ========== ================================ 45 32 34 GTTTCAATCCACGCCCCCGCACGGGGGGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-10.50,-10.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [26.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [118,180] Score: 0/0.18 # # Final direction: R [0.74,5.18 Confidence: HIGH] >NC_008711 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 606879 23 100.0 25 NNNNNNNNNN ....................G.. GAGACGGCGACGGCGACGGCGACGG 606927 23 100.0 25 NNNNNNNNNN ....................... GAGACGGCGACTGAGACGGCGACGG 606975 23 100.0 19 NNNNNNNNNN ....................... GAGACGGCGACGGCGACGG 607017 23 100.0 19 NNNNNNNNNN ....................... GAGACGGCGACGGCGACGG 607059 23 100.0 31 NNNNNNNNNN ....................... GAGACGACGACGGCGACGGCGACGGCGACGG 607113 23 100.0 19 NNNNNNNNNN ....................... GAGACGGCGACGGCGACGG 607155 23 100.0 1 NNNNNNNNNN ....................... NNNNNNNNNN ========== ====== ====== ====== ========== ======================= 7 23 23 CCACCCCCACGGTGACTGCAACT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [30.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1138,555] Score: 0.18/0.18 # # Final direction: R [0.55,0.68 Confidence: LOW] >NC_008726 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =========================== ====== 2281499 27 100.0 21 NNNNNNNNNN AA.G...................G... AAGGCCGCAGTCAAGAAGGCC 2281547 27 100.0 39 NNNNNNNNNN ........................... AAGGCGGCTCCGGCGAAGAAGGCCGCAGTCAAGAAGGCC 2281613 27 100.0 39 NNNNNNNNNN ........................... AAGGCGGCTCCGGCGAAGAAGGCCGCAGTCAAGAAGGCC 2281679 27 100.0 51 NNNNNNNNNN ........................... AAGGCCGCAGTCAAGAAGGCTCCGGCCAAGAAGGCTGCTCCCGCCAAGAAG 2281757 27 100.0 1 NNNNNNNNNN ........................... NNNNNNNNNN ========== ====== ====== ====== ========== =========================== 5 27 37 GCGCCCGCCAAGAAGGCTCCGGCCAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,1] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.00,-4.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [28.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [542,106] Score: 0.18/0.18 # # Final direction: R [0.55,1.05 Confidence: LOW] >NC_008750 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2522578 28 100.0 32 NNNNNNNNNN .C.AC........A...C.......... TTGAATTTTTAAATACTTCACCTTCTCTTGTG 2522638 28 100.0 32 NNNNNNNNNN ............................ GTGTTAGGTGGTAAAACGCTACTCATAGAGTC 2522698 28 100.0 32 NNNNNNNNNN ............................ CAAATTGAAATGGAGAACAAGTACCGCCAGTA 2522758 28 100.0 32 NNNNNNNNNN ............................ ACCAAAGCGATTGCTAAAATCACGGCTGTACA 2522818 28 100.0 32 NNNNNNNNNN ............................ AGGTTGTACATAGCGGTGTAGTTTATCCCCTA 2522878 28 100.0 32 NNNNNNNNNN ............................ TAGCGATTGCAGATACCTATCTTGTTCAGTTA 2522938 28 100.0 32 NNNNNNNNNN ............................ TCGTATTCGACCAGTTCGAGTTTCCGACCAAT 2522998 28 100.0 32 NNNNNNNNNN ............................ GTCATAATCTTAAGCTCGTCGTACTGCCAGAT 2523058 28 100.0 32 NNNNNNNNNN ............................ GCCAGCTTGACGCCACCTTGTGGGCGGCTGTA 2523118 28 100.0 32 NNNNNNNNNN ............................ CGAATCGCCGTTTCAACGTGCTTTTTCATGAA 2523178 28 100.0 32 NNNNNNNNNN ............................ GAATTAAGTGATGCCGCCATTTGCAGCGGATC 2523238 28 100.0 32 NNNNNNNNNN ............................ GCCATTGTGACAAAAATAAAACAGGCTGGAAT 2523298 28 100.0 32 NNNNNNNNNN ............................ TCGCTTTATTCTTCAATTAATACCATTTGTGA 2523358 28 100.0 32 NNNNNNNNNN ............................ GTTGAAATGGTTCAACTAGGCATGGCACCAAT 2523418 28 100.0 32 NNNNNNNNNN ............................ TAGCCGCAACAGCTAAAACCGCAGCACCAACA 2523478 28 100.0 32 NNNNNNNNNN ............................ AGATATGAGAACAGCTTTAGGTCAAACAGCTA 2523538 28 100.0 32 NNNNNNNNNN ............................ GAGCAGTAAAGGTGCAGTCAATTTGCTTTATT 2523598 28 100.0 32 NNNNNNNNNN ............................ AATATTTTCATATTAGTTTCCAAATAAATTTT 2523658 28 100.0 32 NNNNNNNNNN ...........................T GGTATGGGTATCAATCGCCCATGGGTGTGATC 2523718 28 100.0 32 NNNNNNNNNN ............................ ATTGTGATTATGCCCGTCTAGCTTATACAGAC 2523778 28 100.0 32 NNNNNNNNNN ............................ CAAACGGTAACGCTAAACCCTGTTGCCAAATC 2523838 28 100.0 32 NNNNNNNNNN ............................ AACCTTCAGCAATTGCCATAATTGCTTCACCT 2523898 28 100.0 32 NNNNNNNNNN ............................ GTCTCACGCCATGTTTCGAGGTTTTGCCAATC 2523958 28 100.0 32 NNNNNNNNNN ............................ ACAAAAGCGGTCGCTGCAATGGTGGCCGTGGT 2524018 28 100.0 32 NNNNNNNNNN ............................ AGTAAGAGAATTTGAGCTTCATAATGTTCAAT 2524078 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 26 28 32 TTTCTAAGCCGCCTGTGTGGCGGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-10.20,-9.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [61.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [240,149] Score: 0/0.18 # # Final direction: R [0.37,1.05 Confidence: MEDIUM] >NC_008769 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3075383 36 100.0 40 NNNNNNNNNN CA.G...GGG.GGT..A................... TCGCGGCGAGCACGTCTCACCCAGCAGGCGGTGAGGTTGG 3075459 36 100.0 39 NNNNNNNNNN .................................... ACGGACGAGCTGGACCGCATCAGCGATGCTGAGCTGAGG 3075534 36 100.0 37 NNNNNNNNNN .................................... TTGTCTCAATCGTGCCGTCTGCGGTGACACGCTCCAA 3075607 36 100.0 40 NNNNNNNNNN .................................... TCGACGATTGGGACATCGACATCGACGCGATCGTCGACGA 3075683 36 100.0 41 NNNNNNNNNN ..........T......................... GTGATCTTCTCTCCTGGCGAGGTCAAGGAAATCGATGTGGA 3075760 36 100.0 36 NNNNNNNNNN .................................... CACCAGGATCAGCGCCAAGCCAGTTAGCGCAATCCA 3075832 36 100.0 36 NNNNNNNNNN .................................... CTCCCGGACCATCTGCAGCTCGCCCGGGTCCATGCG 3075904 36 100.0 37 NNNNNNNNNN .................................... CGGAGTCATCCGCGCGGGCCGGCGCGATTGTTGCCGG 3075977 36 100.0 25 NNNNNNNNNN ................................TCCG CGAAATTCACTGCGCGTTATTCAAG 3076038 36 100.0 41 NNNNNNNNNN .................................... CCGAGCCGACCATCCGCATCACACCGAAAGGGTTGGCGCAA 3076115 36 100.0 36 NNNNNNNNNN .................................... ACGTGGGGAGAGGGAATGGCAATGATGGTCGACGAA 3076187 36 100.0 40 NNNNNNNNNN .................................... CTCGGACAGCATCTCCCCGGGCGGGCAGCAGATATCCCAT 3076263 36 100.0 41 NNNNNNNNNN .................................... CGACCCGTGGCCGCCAGGTTGCCGCCGCCGTTGCTCACCTG 3076340 36 100.0 37 NNNNNNNNNN .................................... CCGGAAGTCAACTAGAGCGGGTGTCGAACGCTGCCCG 3076413 36 100.0 37 NNNNNNNNNN .................................... CTAGGCGGCCCCGGCGAGGCTGGGGGCGGTTTCACGC 3076486 36 100.0 40 NNNNNNNNNN .................................... GCGGAGCTGCGGCGCCGGATGATGGCGTTGCTCAAGAGCA 3076562 36 100.0 39 NNNNNNNNNN .................................... TCAAAAACGGGGACGGCATGCTGCATGCCCTAACGTCGT 3076637 36 100.0 38 NNNNNNNNNN .................................... CAGCGCAGACGGCAGCCCCGAGTACTCGCTCTCCTCAG 3076711 36 100.0 37 NNNNNNNNNN .................................... AGGCTGAAATTGAAGCCGGAAATGACGACGCATTGGT 3076784 36 100.0 35 NNNNNNNNNN .................................... CTAAGCCCGCTAATCCCGCACAAGTGGTCAGAAAA 3076855 36 100.0 39 NNNNNNNNNN .................................... CTGATGATTGGTCGGCGTATGACGTGCTACTGAGGTGTT 3076930 36 100.0 38 NNNNNNNNNN .................................... ACCCCTGAGCCACGGCATGTGCACGGCTCCGTGTTCAA 3077004 36 100.0 39 NNNNNNNNNN .................................... TCGATGAATGATGCGCGCCAGCGGTAACGCGTGGGATGT 3077079 36 100.0 36 NNNNNNNNNN .................................... TCTGAAAATTCGTGGTCAACGAATTGTCGTCGAAAT 3077151 36 100.0 35 NNNNNNNNNN .................................... ACGGGCCGTGGGGCACTTACGGCGACGGCGCACAT 3077222 36 100.0 37 NNNNNNNNNN .................................... CCCCTAGCCACGCCTGCCGTGCCATGCCGCGCCGCGA 3077295 36 100.0 36 NNNNNNNNNN .................................... TTGGTCAAAAGCTGTCGCCCAAGCATGAGGCAAAAA 3077367 36 100.0 41 NNNNNNNNNN .................................... ACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTATG 3077444 36 100.0 38 NNNNNNNNNN .................................... GTGCAAGAATTCCGGGTTGCAGTGCAACACGGTTTTAA 3077518 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 30 36 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [36,50] Score: 0/0.18 # # Final direction: R [0,1.42 Confidence: HIGH] >NC_008769 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3072633 36 100.0 35 AGTCGTCGTA .................................... ACTTGCGCGCACAACGCATCCGCCATCCACGGGGC 3072704 36 100.0 37 TCCACGGGGC .................................... CTGAAAGGGGGACTGTGGACGAGTTCGCGCTCAAAAT 3072777 36 100.0 38 CGCTCAAAAT .................................... GCGAGAATAAGATTGTCAGGCTGGTGCTGCGTTTCCGT 3072851 36 100.0 36 GCGTTTCCGT .................................... CCGCTGGGGGCAGGCCCAGGTGGGACGGTTCCTCGC 3072923 36 100.0 36 GGTTCCTCGC .................................... CCGCTGGGGGCAGGCCCAGGTGGGACGGTTCCTCGC 3072995 36 100.0 43 GGTTCCTCGC .................................... TTCGGGAGCATGCCGCAGCTGCGGATGTGGTGCTGGATTTCGA 3073074 36 97.2 41 TGGATTTCGA ....A............................... ACGTTGGAAGCGTTTCGAGCGTACGGACTTTCCGGATGCAG 3073151 36 100.0 38 CCGGATGCAG .................................... AGGCGCTTCGACGGTGTGGGCGAGGTGACTTCGCAAAG 3073225 36 100.0 37 CTTCGCAAAG .................................... TGCGTCAAGTGCGGCACCGCCGTCATGTCGGTGTCGA 3073298 36 100.0 37 TCGGTGTCGA .................................... TGCGTCAAGTGCGGCACCGCCGTCATGTCGGTGTCGA 3073371 36 100.0 38 TCGGTGTCGA .................................... TTGAACACGCCGATACCTATTTGGTCGGGAGTGATAAA 3073445 36 100.0 35 GAGTGATAAA .................................... TGACAGGGTGCGGTGGTCGCTGATCGGCTCCCCGA 3073516 36 100.0 37 GGCTCCCCGA .................................... CGGACTTGATCGACGCGAACCTGTCTGACGCGAACCT 3073589 36 100.0 37 ACGCGAACCT .................................... GGCTGGAAAAGGGCGCGGGGCAACCGCATCGTCAAGA 3073662 36 100.0 36 ATCGTCAAGA .................................... GCGTTGTGGTCGTGTCGTGGAGCCTGTATTTCGCTG 3073734 36 100.0 36 TATTTCGCTG .................................... CATTAGTTGGTGTTGTGATCGCTAAACGCCGGGGCA 3073806 36 100.0 38 CGCCGGGGCA .................................... CTATCCGCGGGAAGAGATCACGAATCCGGCGTCGAAGG 3073880 36 100.0 38 GCGTCGAAGG .................................... ATGCTGAGCTGAGGCGCCGGATGATGGTGGTGCTGAAG 3073954 36 100.0 GGTGCTGAAG .................................... TGACAGGGTGCGGTGGTCGCTGATCGGCTCCCCGA ========== ====== ====== ====== ========== ==================================== 19 36 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [38.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [150,99] Score: 0/0.18 # # Final direction: R [0.27,0.74 Confidence: MEDIUM] >NC_008818 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 632553 25 100.0 37 NNNNNNNNNN ......................... GCAATCCAGCAGATGGCCCAGCAATTCCAGCAGCAGC 632615 25 100.0 45 NNNNNNNNNN ......................... TACGCATAAAGAAAGCACTAGCAGAACATCTTGAAGCATTTGCAG 632685 25 100.0 45 NNNNNNNNNN ......................... GGTACAGCCTTGCGAAGTTTTCCTCGGTCGCCAGGGCCTTTTCGA 632755 25 100.0 44 NNNNNNNNNN ......................... GCGATGGGCATCCCTGTGCAGATTGGCGCCAAGCCAATCAGCAT 632824 25 100.0 44 NNNNNNNNNN ......................... CCCTTGGCTCCTCGGGAGGCGAGTGCTGCTTCCTGCACAGCTCG 632893 25 100.0 44 NNNNNNNNNN ......................... ATGTATTCAACGAGGCCAAACTCCTCAGCCTTCTTTACTTCTCT 632962 25 100.0 43 NNNNNNNNNN ......................... CCTACCATGGCGGCCTCCACCCCACCCCAAACATTGTAGCTAT 633030 25 100.0 41 NNNNNNNNNN .......................GA CCTCTCAAGCATTGACACGCCATGACCCGCAAGCGCCATTG 633096 25 100.0 40 NNNNNNNNNN ......................... TCCATGATGACACCCAGTTATCGTTCACCAACACCACTAG 633161 25 100.0 55 NNNNNNNNNN ......................... CGCTCACACGGTCGAGACCACGCTCTCCTCGATCCACGACACAAGGAGGCGACTC 633241 25 100.0 48 NNNNNNNNNN ......................... TCGTCGCTCACCTATCTCTCCATCACGATACGCAATCGCCACGTCTAT 633314 25 100.0 45 NNNNNNNNNN ......................... GCATATGCAGTATGGTAGGCCTTCCTTGTCCCATTTCTCCAGCTC 633384 25 100.0 42 NNNNNNNNNN ......................... TCCAAGAGCTCTACTTGCCGTCTCTTCAACTCTAGATATTCT 633451 25 100.0 45 NNNNNNNNNN ......................... TCTCCGTGAGACGCTTCTCAAGCTCCTCAGGGTCAACGGTTTTCT 633521 25 100.0 40 NNNNNNNNNN ......................... AACTCGCTGGCCATCTCCAATAGCTGCTTGATCTTTTGGA 633586 25 100.0 42 NNNNNNNNNN ......................... TCCCAACAGCGTAGCCGTACCTTCTCGCGTGGTCTATGAAGT 633653 25 100.0 45 NNNNNNNNNN ......................... TACATCATATCCTACTTCTCTACTCTCACAGTACTCTTCACATTT 633723 25 100.0 38 NNNNNNNNNN ......................... TCTCCGCCTGCTCGGCGGCCTGCTCTAGCGCCGCTATG 633786 25 100.0 41 NNNNNNNNNN ......................... CTCATTGCCAAGTCTTGCTTGCTGAACGTGAACTGCTTCGC 633852 25 100.0 40 NNNNNNNNNN ......................... TCAATGCTGCTGATGTTGCCGATGCTTGGCGTCGGCACAA 633917 25 100.0 41 NNNNNNNNNN ......................... CCTTGTTTGCAGACTCGACGAACGTCGCGAACACAATCGTG 633983 25 100.0 45 NNNNNNNNNN ......................... GTGAGTACGCAGACACCAAGGCCGCCAAGGTTTCACCCCACGTGT 634053 25 100.0 40 NNNNNNNNNN ......................... TTTCTGGAATCAGGACTCTAAGTCTCCTTTCCCAAACAAA 634118 25 100.0 41 NNNNNNNNNN ......................... TGGGAGCGCACGGGGGGTCTGCGCACACTTTACCAATTCAA 634184 25 100.0 46 NNNNNNNNNN ......................... ACGAAGACGCTGTACGAGCTGCCGCCACCAGGCAACTACACACCAA 634255 25 100.0 42 NNNNNNNNNN ......................... CGTCATTGTACTCTTTTCGCTCAATTATTATTATGTCGTCGG 634322 25 100.0 40 NNNNNNNNNN ......................... GTGTTAGTAGTTCTCTCATGGTTTTCAGTGTGTTTACAGC 634387 25 100.0 41 NNNNNNNNNN ......................... ATCCGAACTGTGCCAGTTCACATTCCATCATTTTTATAGAG 634453 25 100.0 46 NNNNNNNNNN ......................... TCTGCTGGATTGCGGGGACATGCGGCGCGAGCTCCCTCAGCATCTT 634524 25 100.0 39 NNNNNNNNNN ......................... TCCGTTCGTCCTCAGAGCGAACAGCTTCCTTGCGTACGC 634588 25 100.0 41 NNNNNNNNNN ......................... TGGACTGACTTCGATTACAAGCAGCACTACGACAATCTCGA 634654 25 100.0 45 NNNNNNNNNN ......................... GTTCTAGCTGCTGACCCCGACAGCCTCGTCGCTGAGCTTAACCGT 634724 25 100.0 38 NNNNNNNNNN ......................... CTGTATGTTTGCCGCAACATATCGCTATCACCTTGGGC 634787 25 100.0 45 NNNNNNNNNN ......................... AGGCATCATCGGCGCGTCAAGGATCACTCCAGCACAGCTCTCCGA 634857 25 100.0 44 NNNNNNNNNN ......................... ACACCTCCACGCGGTCCGGTGCAGCCTCCACTTCCCTTTACAAT 634926 25 100.0 46 NNNNNNNNNN ......................... GGCCGCGTAGACCATGTAGCCTACTGCTAGCGCTACGGCTGGGTAC 634997 25 100.0 45 NNNNNNNNNN ......................... GTTTTTACTCTGCCAGGTGTTAACCTCGAATTCAACTCTCATCTT 635067 25 100.0 43 NNNNNNNNNN ......................... TTATCGCAGCTTGTTTCCTCTTCTTCCGTTTCCTCCTCCGCTT 635135 25 100.0 53 NNNNNNNNNN ......................... GCGGTCGCAACCCCATGCGCGTCGTAGTGGGCTATAATGAGGTCCTGGACAGC 635213 25 100.0 43 NNNNNNNNNN ......................... TTTAAATCCGGTTTTCTTTCAATTCCACTTCTGGGTTAAAAAA 635281 25 100.0 46 NNNNNNNNNN ......................... TATACTTGTTATATCTCACCCTGATGTCTAGCATTCTTCCACCTCG 635352 25 100.0 44 NNNNNNNNNN ......................... CTGGGGACCTGTGTCTGGAAACCTCGCTATTATCGCCCCGCCAA 635421 25 100.0 45 NNNNNNNNNN ......................... ACACCATTTGCAACAATGAGGATGGTGGTTACTAGCGATAGGGAT 635491 25 100.0 44 NNNNNNNNNN ......................... TTGATTATTGCCATGACTGTGAAGGCTAGCTGGCCAACGGCATG 635560 25 100.0 43 NNNNNNNNNN ......................... CGCAGGCTCAGGCGTGGCACGGCATAGAAAACACTTATACTAG 635628 25 100.0 46 NNNNNNNNNN ......................... TAGAACAATATATACGGCTCCGTGCCGTCCTTTGGCACCCTCAGCT 635699 25 100.0 46 NNNNNNNNNN ......................... ACGAACGCTTTGTTGACAGAGACCGGTGGGGAGACTGCGGCAACGA 635770 25 100.0 40 NNNNNNNNNN ...T....T................ CTACATGTCTTACACTCGTAAGACAGCACGTAATACATGT 635835 25 100.0 1 NNNNNNNNNN ...T.................T..T NNNNNNNNNN ========== ====== ====== ====== ========== ========================= 49 25 43 GAACAACTCAAAAGAGAATTGCAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.00%AT] # Reference repeat match suggestion: F [matched GAACAACTCAAAAGAGAATTGCAAG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-1.90,-2.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [40.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [332,289] Score: 0/0.18 # # Final direction: F [0.91,0.64 Confidence: LOW] >NC_008769 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 3075459 35 100.0 40 GTGAGGTTGG ................................... CACGGACGAGCTGGACCGCATCAGCGATGCTGAGCTGAGG 3075534 35 100.0 38 TGAGCTGAGG ................................... CTTGTCTCAATCGTGCCGTCTGCGGTGACACGCTCCAA 3075607 35 100.0 41 CACGCTCCAA ................................... CTCGACGATTGGGACATCGACATCGACGCGATCGTCGACGA 3075683 35 97.1 42 TCGTCGACGA ..........T........................ CGTGATCTTCTCTCCTGGCGAGGTCAAGGAAATCGATGTGGA 3075760 35 100.0 37 TCGATGTGGA ................................... CCACCAGGATCAGCGCCAAGCCAGTTAGCGCAATCCA 3075832 35 100.0 37 GCGCAATCCA ................................... CCTCCCGGACCATCTGCAGCTCGCCCGGGTCCATGCG 3075904 35 100.0 38 GGTCCATGCG ................................... CCGGAGTCATCCGCGCGGGCCGGCGCGATTGTTGCCGG 3075977 35 91.4 29 TTGTTGCCGG ................................--- TCCGCGAAATTCACTGCGCGTTATTCAAG 3076041 35 100.0 42 GTTATTCAAG ................................... CCCGAGCCGACCATCCGCATCACACCGAAAGGGTTGGCGCAA 3076118 35 100.0 37 GTTGGCGCAA ................................... CACGTGGGGAGAGGGAATGGCAATGATGGTCGACGAA 3076190 35 100.0 41 GGTCGACGAA ................................... CCTCGGACAGCATCTCCCCGGGCGGGCAGCAGATATCCCAT 3076266 35 100.0 42 GATATCCCAT ................................... CCGACCCGTGGCCGCCAGGTTGCCGCCGCCGTTGCTCACCTG 3076343 35 100.0 38 TGCTCACCTG ................................... CCCGGAAGTCAACTAGAGCGGGTGTCGAACGCTGCCCG 3076416 35 100.0 38 ACGCTGCCCG ................................... CCTAGGCGGCCCCGGCGAGGCTGGGGGCGGTTTCACGC 3076489 35 100.0 41 GGTTTCACGC ................................... CGCGGAGCTGCGGCGCCGGATGATGGCGTTGCTCAAGAGCA 3076565 35 100.0 40 CTCAAGAGCA ................................... CTCAAAAACGGGGACGGCATGCTGCATGCCCTAACGTCGT 3076640 35 100.0 39 CTAACGTCGT ................................... CCAGCGCAGACGGCAGCCCCGAGTACTCGCTCTCCTCAG 3076714 35 100.0 38 CTCTCCTCAG ................................... CAGGCTGAAATTGAAGCCGGAAATGACGACGCATTGGT 3076787 35 100.0 36 ACGCATTGGT ................................... CCTAAGCCCGCTAATCCCGCACAAGTGGTCAGAAAA 3076858 35 100.0 40 GGTCAGAAAA ................................... CCTGATGATTGGTCGGCGTATGACGTGCTACTGAGGTGTT 3076933 35 100.0 39 CTGAGGTGTT ................................... CACCCCTGAGCCACGGCATGTGCACGGCTCCGTGTTCAA 3077007 35 100.0 40 CCGTGTTCAA ................................... CTCGATGAATGATGCGCGCCAGCGGTAACGCGTGGGATGT 3077082 35 100.0 37 CGTGGGATGT ................................... CTCTGAAAATTCGTGGTCAACGAATTGTCGTCGAAAT 3077154 35 100.0 36 TCGTCGAAAT ................................... CACGGGCCGTGGGGCACTTACGGCGACGGCGCACAT 3077225 35 100.0 38 CGGCGCACAT ................................... CCCCCTAGCCACGCCTGCCGTGCCATGCCGCGCCGCGA 3077298 35 100.0 37 CGCGCCGCGA ................................... CTTGGTCAAAAGCTGTCGCCCAAGCATGAGGCAAAAA 3077370 35 100.0 42 GAGGCAAAAA ................................... CACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTATG 3077447 35 100.0 39 ACCCTCTATG ................................... CGTGCAAGAATTCCGGGTTGCAGTGCAACACGGTTTTAA 3077521 35 100.0 ACGGTTTTAA ................................... CTCTATGGAC ========== ====== ====== ====== ========== =================================== 29 35 38 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [35.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [112,48] Score: 0.18/0.18 # # Final direction: R [0.18,1.42 Confidence: HIGH] >NC_008818 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 702374 25 96.0 46 TGCCAAAGCT ...A..................... GCCCGCTCCAGGACTCGGCACGGACCTCTATCCTAGTGCCTCCGTT 702445 25 100.0 39 TGCCTCCGTT ......................... TAGGCTATGTCAAAAGAGAAATCGCTATAAGAAAAACAT 702509 25 100.0 43 AGAAAAACAT ......................... GAGCGCCTGCTGCAGATCATAGAGTATGAATTGTCGAAGGAGA 702577 25 100.0 47 TCGAAGGAGA ......................... AGGGAGGATAAGGACGACCCGCTGGAGGCAATAGCAATAGGTGTCAT 702649 25 100.0 45 TAGGTGTCAT ......................... CCTGGCGAACATGGTTATCGTGCTGCCGCCCTCGTAGCCAAACGC 702719 25 100.0 45 AGCCAAACGC ......................... ACGAGTGAGGTACGGGCGTCGAGGAAAACTACGGTACATGATTGT 702789 25 100.0 44 ACATGATTGT ......................... ATTTTTGCCGTTTGGTGGGAAGGTTCTCCCACCTGCTCACTTCT 702858 25 100.0 48 GCTCACTTCT ......................... AGTGGTGACAAGGCAGCAAGTAATAGTGCAACTCTGCATACCGAAAGA 702931 25 100.0 45 TACCGAAAGA ......................... AGGTGGAGAGGCTGCTGGGCGGTGAGGCCCTGGCAGGTATAAAGA 703001 25 100.0 39 GGTATAAAGA ......................... ATCCACTCCTCCCTGCTTACCTTCCTCTTTACGACTAGT 703065 25 100.0 42 TACGACTAGT ......................... CTATGTCCTCCTCCCGTAGGCTCAGGGGCCAGGGCATTAGAA 703132 25 100.0 47 GGCATTAGAA ......................... CAGCAGTTGCTCTAGGGTCTTCGGCACCCACATGGAGTGCTGTGGTG 703204 25 100.0 38 TGCTGTGGTG ......................... GGAGGTGAGAGGTATGAGTAGAAAATGTAAATTCGTAT 703267 25 100.0 42 AAATTCGTAT ......................... AGATGAGATAGAGCAGCTGCTAGAGGAGTGCGAAGCCGTTGA 703334 25 100.0 43 AAGCCGTTGA ......................... CAAACCTGCGCTACCTCAACGACCTACCACCAACTATTGATAT 703402 25 100.0 42 CTATTGATAT ......................... AGATGAGATAGAGCAGCTGCTAGAGGAGTGCGAAGCCGTTGA 703469 25 100.0 43 AAGCCGTTGA ......................... CAAACCTGCGCTACCTCAACGACCTACCACCAACTATTGATAT 703537 25 100.0 53 CTATTGATAT ......................... CCAGGTACGGTGACCTACTGCTTAAACCCGACTGCCTAGCACCAGGAGGGGAT 703615 25 100.0 42 AGGAGGGGAT ......................... CATTATACCGATGATGTTCAGTACTGCTACAGCAATGGCAGC 703682 25 100.0 40 CAATGGCAGC ......................... TGGTGGAGATTGTGAAGTGAGGTGATCGGCATGCAGATGT 703747 25 100.0 45 ATGCAGATGT ......................... AAGAGAGGTGGCAGTGAGGAAAACGTTGATTGTGATGGAAGAAAT 703817 25 100.0 42 TGGAAGAAAT ......................... GCGTGGTGCTATGGGTCGTCGAGGACTAGGAGGGCGAAGAGT 703884 25 100.0 39 GGCGAAGAGT ......................... CCTCCTCGGAGAGCGTTACATTGCTGAGATATGCCTTTA 703948 25 100.0 45 TATGCCTTTA ......................... TCACATGGCTCGGTTTTCCCCCAAAATCACGCATTCATTGTACGT 704018 25 100.0 46 CATTGTACGT ......................... ATTAATCAAATCACAATCATTGGGAGCTGCGATCAACAAAAGAACA 704089 25 100.0 47 CAAAAGAACA ......................... CAAGCATCACCGCATCTACCGGCTCCTGCTACGCCTCGGCCCCAGGA 704161 25 100.0 44 GGCCCCAGGA ......................... TTGATTGTAGGCGCGCAAGGCGGTGGTGGCAATAACGCTTTCGC 704230 25 100.0 45 ACGCTTTCGC ......................... TGGCACGCTGGAAGTACTACTACAACGGAGTGAACCAGTTGGACC 704300 25 100.0 44 CAGTTGGACC ......................... CTTCGTCCTGTTCGGCAGTATCAACTATGTGAAGACTGAGATGC 704369 25 100.0 43 ACTGAGATGC ......................... TCGCTCGCTGGCGGTGGCGTCGTCGAGATCGCAAAATCGAATC 704437 25 100.0 47 AAATCGAATC ......................... ATACAGCTTCGAGGAACGCGAAGAGCCTGGCCGCTTGCTTCTTGTCC 704509 25 100.0 48 CTTCTTGTCC ......................... CAGTATGCATAGACAAGTCTATCGGCAGGATAGAGCCCTATATCAAGG 704582 25 100.0 46 TATATCAAGG ......................... AGAGGATGTTCGAGGAGCGGCTGAGGGAGATGCAGGAGACGATACA 704653 25 100.0 44 AGACGATACA ......................... TTAGTAGAATCATAGAAGAAGGTAGTATCAGCATCTTGATAGAT 704722 25 100.0 40 CTTGATAGAT ......................... TTGAAAAAAGACCTGCATGAGGTGGCTCATCATGCGCTTG 704787 25 100.0 42 CATGCGCTTG ......................... AGAGCCCGTTCACCCGCATAGCGGTCAAATGGGAGCCCAGCG 704854 25 100.0 43 GAGCCCAGCG ......................... ACCGGTGAGAGGGATGGTAAGGGTCGAGTTTCAGATCAATACA 704922 25 100.0 46 GATCAATACA ......................... TTCACATCATTCATTGAGTACACAACAGGAGAGAGCTACATAGAGG 704993 25 100.0 43 TACATAGAGG ......................... ATAGTCATCGAATACAACGGCATATTCATGATGGAATGCAAAC 705061 25 100.0 47 GAATGCAAAC ......................... AGACCCTGAGAAACGAGACAGACTACCCGCCAGCCAGGCTCTGGAGG 705133 25 100.0 38 GCTCTGGAGG ......................... ACGTTAGAAACCCCGATGCAGCGATAAAGACACTGAGC 705196 25 100.0 41 GACACTGAGC ......................... GATATTCCACGTAGACCACCACGAGACAAGCATACCGTTCG 705262 25 100.0 41 ATACCGTTCG ......................... CTACATCTCGCTGCGCTACAGCAGCAAGGACGAGGCGTCCA 705328 25 100.0 49 GAGGCGTCCA ......................... AAGACCATGAGTGCACAACGATGCAGCAGTTCTACATAGTCTTCAATGA 705402 25 100.0 41 TCTTCAATGA ......................... GAAGAAGGTTGGCAACAAATGGAGGGGCGTTAAAGCCCTTG 705468 25 100.0 39 AAAGCCCTTG ......................... AGCAAGCTGAAGTTTAAACTCTGCAACGTGGAGAGCTGC 705532 25 100.0 GGAGAGCTGC ......................... TGCACTGTGG ========== ====== ====== ====== ========== ========================= 47 25 43 CTTGCAATTCTCTTTTGAGTTGTTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.00%AT] # Reference repeat match suggestion: R [matched GAACAACTCAAAAGAGAATTGCAAG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-2.20,-1.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [55.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [690,474] Score: 0/0.18 # # Final direction: R [0.64,0.91 Confidence: LOW] >NC_008782 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 499830 28 100.0 32 GCTCTGCCTT ............................ AATTCGCCCGATTAGCTCACGAAGGGCACGAA 499890 28 100.0 32 AGGGCACGAA ............................ AGCAGACTTCATCGAAACCATCCGCTCAGATT 499950 28 100.0 32 CGCTCAGATT ............................ CAGACCCCATTGGCGACATGCTCGACGCCGTG 500010 28 100.0 32 CGACGCCGTG ............................ GGGATGAGTCTCTTTCAGCGCGGCTTCATCGA 500070 28 100.0 32 GCTTCATCGA ............................ CGTCGCTCATCAGGCGGACTCGCGGCAGTTCA 500130 28 100.0 32 CGGCAGTTCA ............................ TTTACAGAGGCCCCAGCGCCGCGCCGGTTTGA 500190 28 100.0 32 GCCGGTTTGA ............................ TCCACAACAAGGAGTCGTTATGAAAGAGCAAA 500250 28 100.0 32 AAAGAGCAAA ............................ AAGTGCTGGCCGGCCTGCACCGGCTCGTTCCA 500310 28 100.0 33 GCTCGTTCCA ............................ GCGCAGGACCGCGAGGACCGCGACACCCGGTTG 500371 28 100.0 33 CACCCGGTTG ............................ ATGACCAGATCGGGCTCGCCGCCTTCAGGTGAC 500432 28 100.0 32 TTCAGGTGAC ............................ GATACGGCCTCATCAACGGCGCGGCCATCAAC 500492 28 100.0 32 GGCCATCAAC ............................ CGGCCTACTGTGGCCGAGCGTGCGGCCACGGC 500552 28 100.0 32 CGGCCACGGC ............................ ACCAGCCGAATCCCGATAGCCATCACGATGAT 500612 28 100.0 33 TCACGATGAT ............................ AGACAAGCCAACGCTGCTCAAGTCTGGCGCAGA 500673 28 100.0 32 CTGGCGCAGA ............................ TTCCAGCAGGCGCAGGAGTTCGCCAAGGAGCA 500733 28 100.0 32 CCAAGGAGCA ............................ GTACAGGGCATTCCAGTCTGCTTTCGCAAACA 500793 28 100.0 32 TTCGCAAACA ............................ CGCGAGCGGCGCACGGGTGTCACGCGCTACAA 500853 28 100.0 32 CGCGCTACAA ............................ TTCCAGCAGGCGCAGGAGTTCGCCAAGGAGCA 500913 28 100.0 32 CCAAGGAGCA ............................ CTCGCGCTGCTGCAGCTTGGCCTGGTAGCTCT 500973 28 100.0 33 TGGTAGCTCT ............................ CTGGAATGCCCTGTACCAGCAGGACGCGGCCGA 501034 28 100.0 32 ACGCGGCCGA ............................ GAGGCACTGGAAGCGTGCAAGAAAGCAGAGCA 501094 28 100.0 32 AAGCAGAGCA ............................ TCCCTACATCGGCCCGGATCGCCGGGCGTGTG 501154 28 100.0 32 CGGGCGTGTG ............................ AGCTGTCATGGTGTTCCCCTAGAACATCTGAT 501214 28 100.0 32 AACATCTGAT ............................ AAGTAACCACTGAGAAAGACAACGGGGATGAC 501274 28 100.0 32 CGGGGATGAC ............................ CAGCGTCACAGCGTTAAACGTCGCCATCAGCG 501334 28 100.0 32 GCCATCAGCG ............................ CGCATGCCCTGATGTGATGGTGAATGCGCAGT 501394 28 100.0 32 AATGCGCAGT ............................ TCCACCCAGGTGATGGGCACGCACCACCGCTC 501454 28 100.0 32 ACCACCGCTC ............................ CCGCTGGAGCCGATCTGCGCGCCGTACCCGCT 501514 28 100.0 32 CGTACCCGCT ............................ GACACGCAAATGGCTGCTGTGGACGCATGCAT 501574 28 100.0 32 ACGCATGCAT ............................ GCGACAGTCCGTGAGCCGCGCTGAATTCTGGC 501634 28 100.0 32 GAATTCTGGC ............................ CAGCACCTGGGAAAGCATCAAGCTCTTACCGT 501694 28 100.0 32 CTCTTACCGT ............................ TATCCAGCGCATCTCCCTGCGCTGCTGGCGCT 501754 28 100.0 32 TGCTGGCGCT ............................ CGCATGCCCTGATGTGATGGTGAATGCGCAGT 501814 28 100.0 32 AATGCGCAGT ............................ CCTGTCTGCTTGTCCTTCCACTTGTCGGTAGT 501874 28 100.0 32 TGTCGGTAGT ............................ CCGTACAGCCTCTCAATCGTCATGTTCAGTGC 501934 28 100.0 32 TGTTCAGTGC ............................ GCCTGCGGCGAGGACTTTTGGCACGCCATCAA 501994 28 100.0 32 ACGCCATCAA ............................ GCTGCGTCGGACATGTTCAGCCAGGACTTGGA 502054 28 100.0 32 AGGACTTGGA ............................ GACTGCATTCAGGCGGCTCGCTCTTCGGTGTC 502114 28 100.0 32 CTTCGGTGTC ............................ GCCTGCCGCTGCTGCTGGCGTGGCGCTGGGGT 502174 28 100.0 32 GCGCTGGGGT ............................ TGAGGGGGTTCGCATGACAGCAGACGCACTAC 502234 28 100.0 32 GACGCACTAC ............................ TCTTTGTCGCGCGTCTCTTGTTTGATTCCGCT 502294 28 100.0 32 TGATTCCGCT ............................ GTTTTGCTCTTGGCTACCTTGTAGGCAATCGA 502354 28 100.0 32 AGGCAATCGA ............................ GTGAAGCTCATCAAGGTGCCCAACGCAGACGA 502414 28 100.0 32 ACGCAGACGA ............................ CTCGCGCGCTGGGCATCCGCCAGGCGCTTCTT 502474 28 100.0 32 GGCGCTTCTT ............................ CTCGGTCATGGCCATGTCTTCCTGGCGCACGA 502534 28 100.0 32 TGGCGCACGA ............................ GGTGTGCACCGAGATTGCTGCACGTCAGTCCA 502594 28 100.0 32 CGTCAGTCCA ............................ GCCGATTGGGAGCCGTCTGGCGAGTTCCTGCA 502654 28 100.0 32 AGTTCCTGCA ............................ GGCGAATCCGCACTTCGGCAGCGTGGACTCAT 502714 28 100.0 32 GTGGACTCAT ............................ TTCGCATGAGCCTAATCCTTGGCATGGACCCT 502774 28 100.0 32 CATGGACCCT ............................ ATCAGGTCCACTGCCTGCCCCAGGTAGCGGAA 502834 28 100.0 32 GGTAGCGGAA ............................ ATCTCGTCAATGTCCATCACCTCGGGGTTGAA 502894 28 100.0 32 CGGGGTTGAA ............................ GACGACAAGCTGGATTACCTGACCGCCAAGCC 502954 28 100.0 32 CCGCCAAGCC ............................ TGCTCATGGTTCTCACTCCTGCGGGATGGGTT 503014 28 100.0 32 GGGATGGGTT ............................ TTTCAGGGGATTGTTGATCAACCGATCCGACT 503074 28 100.0 32 CGATCCGACT ............................ GATGCGCGCTACCTGTTTCGCATCAAGGTGGT 503134 28 100.0 32 TCAAGGTGGT ............................ ATTGCGCCAGGTTCAACTGAAACTGGGCCGAC 503194 28 100.0 32 CTGGGCCGAC ............................ CCGGCGGCTGGGCGGGTAGAACACCAGCGACA 503254 28 100.0 33 ACCAGCGACA ............................ ATGTGGAAGAGAAGGCAGAGCGCCTGGGCATCA 503315 28 100.0 32 CTGGGCATCA ............................ CTCGGTCAGCCTCTCGCGGCCTTGCTTCTTGA 503375 28 100.0 32 TGCTTCTTGA ............................ AAAAGCACAATCCCCGCACCTGGCGCGCCAGT 503435 28 100.0 32 GCGCGCCAGT ............................ CAAGCCTTCGCAGCCGCGTGGGAGAGAGCCAA 503495 28 100.0 32 AGAGAGCCAA ............................ ACGTTGCCTTGAGGTATTCGACCGGGTCGGCA 503555 28 100.0 32 CGGGTCGGCA ............................ TTGAAGTGAACCAAGTATTCCAAGTCCCCATT 503615 28 100.0 32 AGTCCCCATT ............................ CTGAGTGAGCAGAAGCACATCGGCGTTGTAGT 503675 28 100.0 33 GCGTTGTAGT ............................ TCGTCATTGATGAGTGCCAGCTCGCGCTGCCAA 503736 28 100.0 32 GCGCTGCCAA ............................ ACATGTGGCAGAAGCGGCTGTATTTGCCGGTT 503796 28 100.0 32 TTTGCCGGTT ............................ CTGGGGGGGCCCCCGCTTGCGGGGGGGACCCA 503856 28 100.0 GGGGGACCCA ............................ TGGACCCTAT ========== ====== ====== ====== ========== ============================ 68 28 32 TTTCTGAGCTGCCTATGCGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [35.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [213,140] Score: 0/0.18 # # Final direction: R [0,1.01 Confidence: HIGH] >NC_009012 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1712609 30 100.0 34 AGTTCTATGG .............................. CTACATTGAAACTGGCAATGCTACAGAAGCAGCA 1712673 30 100.0 40 AGAAGCAGCA .............................. CTATCTTTGTCAAACAGCAACCACATGAAAGCGTCGGCAA 1712743 30 100.0 39 GCGTCGGCAA .............................. AATCTACTATAAGTCAGTATGAAACATGCAAAAGAGAAC 1712812 30 100.0 36 AAAAGAGAAC .............................. GGCGGTGTTGGTGCACATACAAAACTTCCAAGCACA 1712878 30 100.0 38 TCCAAGCACA .............................. CACCTCATATGTTCAGGCATACATTTGTTTATATGGCA 1712946 30 100.0 36 TTATATGGCA .............................. TCTTCTTAGCCTGCCACTGCTCCCATCTGAAACCTT 1713012 30 100.0 37 CTGAAACCTT .............................. TAAAAATATCTTCGGTAATTGCATCCGTTTTAATTTC 1713079 30 100.0 38 TTTTAATTTC .............................. ATTTTAAAAAACCCATATTATATCCTCCTTTAGTTTTC 1713147 30 100.0 37 TTTAGTTTTC .............................. TACTTTGCTTAAGTTTTTCATAATTATCAGATTTATC 1713214 30 100.0 36 CAGATTTATC .............................. TTGTAACCGAGAATGTCCCTCCAATGTTCTAACTTT 1713280 30 100.0 37 TTCTAACTTT .............................. GTGATTGCAGACCCTGTTATTATTCAAGCCGCTGAAA 1713347 30 100.0 38 GCCGCTGAAA .............................. AAGCCGGATTTAGTGAGGCTTTTGGTGAGTCTAATGTC 1713415 30 100.0 39 GTCTAATGTC .............................. ATAAACCTCAGACATATGTCACAGCAAAAGGCGTTTCCT 1713484 30 100.0 36 GGCGTTTCCT .............................. GCCCAAAAGGTAGCTGTAGCTGTTGCTGGCGCAATT 1713550 30 100.0 39 TGGCGCAATT .............................. TTTTCCCCAGGTGACTAATTTCAGGAACTTTTGTTAATG 1713619 30 100.0 35 TTTGTTAATG .............................. TCTTGATAAAATAAACAATTTTTCTGTTGTAGATA 1713684 30 100.0 36 GTTGTAGATA .............................. TGATGTGACTGTTGTGGTTCTCTACTGCTGCGCCTT 1713750 30 100.0 37 GCTGCGCCTT .............................. ATTCAAGTCTCTTTTTTTTGGTGTTGTGCTTGCGAGC 1713817 30 100.0 39 GCTTGCGAGC .............................. TTCTATGGTCGGAGTGACTGGATTTGAACCAGCGACCTC 1713886 30 100.0 37 CAGCGACCTC .............................. AAGGCGAAATAGGTTATAGAAAAATAAGTAATATAAC 1713953 30 100.0 38 GTAATATAAC .............................. AACAGGAGCAGGAAGACAATGAAGCCATGCGCCAGGGC 1714021 30 100.0 37 GCGCCAGGGC .............................. CCATATCACCAAGTAAATTTGTTTCAACTCCGGCACC 1714088 30 100.0 37 CTCCGGCACC .............................. AGAGAAGGGTTTGTAGAAGACGACTTTTTTACTGTCA 1714155 30 100.0 36 TTTACTGTCA .............................. CCGACGCTGACTTTGCCGAGTGTGAAGAATGGCTGA 1714221 30 100.0 38 GAATGGCTGA .............................. CTTCACGGGAAAGGTTCTTGCTGTAATATTCGGCCATA 1714289 30 100.0 36 TTCGGCCATA .............................. AGGAACAGGACTTCATACAACGTCACCGTTGAAGTG 1714355 30 100.0 37 CGTTGAAGTG .............................. TAAGCCATCGGGCATGACGAACCATTATCGCATAAAC 1714422 30 100.0 36 TCGCATAAAC .............................. ATCTCCAATCCACCTCCGGTATGCGGCTGCGTCTGC 1714488 30 100.0 40 CTGCGTCTGC .............................. TAAAGCTCTGGTCGGTAAATGTGCGGATTGGTCGCTCTGC 1714558 30 100.0 37 GTCGCTCTGC .............................. AACTCACCTTCTCCCCATTTACCGGACAAACTAACCG 1714625 30 100.0 38 AAACTAACCG .............................. GGTCTAGCTGTGTACCAGAAATACTGGCACAGCTTTTC 1714693 30 100.0 36 ACAGCTTTTC .............................. GGACTGGCTGCAACCTTGAACATAAACTTGAGTATG 1714759 30 100.0 35 CTTGAGTATG .............................. GAGAGGCCTTTTGGCCGGAGGAAGTTGTGGAGGTG 1714824 30 100.0 38 TGTGGAGGTG .............................. TCGCCATATCTACCACATAACCAGCGGTTGTTGCCAAT 1714892 30 100.0 37 TGTTGCCAAT .............................. ATAGCATTTCTTGAAAAAAACCGTAAAGAGTGGGGAT 1714959 30 100.0 39 GAGTGGGGAT .............................. TTTTTTTTGCAATTCCTTGTAACCCTGCTTTGCTACTCA 1715028 30 100.0 40 TTGCTACTCA .............................. TACCTTTATTAGTCGATACAACACTTAAAGTCTATGACAA 1715098 30 100.0 36 TCTATGACAA .............................. CATACAGCGATGGTAGAAAGGTGAATATTGCTTCCT 1715164 30 100.0 39 ATTGCTTCCT .............................. TTGCCGCACTGCCCAAAACCAGCCCAATTTTTGAACCCA 1715233 30 100.0 41 TTTGAACCCA .............................. TTCGACGTAGAAAATGCAATATCTATCGGGGAATGGTACTT 1715304 30 100.0 37 AATGGTACTT .............................. CCGAACATTTTATGCTCGTAGGGTACATCTTCGCAGA 1715371 30 100.0 37 TCTTCGCAGA .............................. CACGGCAGCACAACCAGCCGCACGTCTGCTTTGGCTT 1715438 30 100.0 35 GCTTTGGCTT .............................. CCGTTTCCCACATCTGATTGAGTTGTTTGTTGATA 1715503 30 100.0 37 TTTGTTGATA .............................. TGCAATGATTTCGAATTCTTTGTAACATTGACTTTGG 1715570 30 100.0 36 TTGACTTTGG .............................. AACCATAAAAAAGTAAACTGAACCATAAATGATACA 1715636 30 100.0 37 AAATGATACA .............................. TGCCCCATTCTTTTCTTCGCTCTCCTTCGCCCATTAG 1715703 30 100.0 39 CGCCCATTAG .............................. ACTTTTTGTCTTCACCTACCATGTCCATATTCGTCATAA 1715772 30 100.0 38 TTCGTCATAA .............................. CTTTTATAAATTGAAAAGGAGGATAAGTATGTCAAACA 1715840 30 100.0 36 ATGTCAAACA .............................. TACCATCTGAGGGCTATTTTGAAAGGTTCGTCAGTG 1715906 30 100.0 38 TTCGTCAGTG .............................. TCGGTATGCACAAAGAAGTACATACCGCAATATCTCTC 1715974 30 100.0 35 AATATCTCTC .............................. GCTGCCATTTTGACAATGGTGTTCTGCTGATCTGC 1716039 30 100.0 35 GCTGATCTGC .............................. TCTCGCTCGAATAAAATTGGTACATCATATTTTTC 1716104 30 100.0 39 CATATTTTTC .............................. AATAAAAAATTTAGCATACTTTATATTGACCTTGAAGCG 1716173 30 100.0 40 CCTTGAAGCG .............................. TAGACATGGATTATGTGAACGTTGTGGCAGACCGGGAAAG 1716243 30 100.0 36 ACCGGGAAAG .............................. GACTAAGTCCTGCATCAGATGGCAATGTCGGTTCAG 1716309 30 100.0 36 GTCGGTTCAG .............................. AAGAAAACTGACAATGCAGAAGCACAAAGAGAAAAG 1716375 30 100.0 36 AAGAGAAAAG .............................. TTCACCTCCTTTTTTCATGAACTTTGGTCCTCCAAG 1716441 30 100.0 38 GTCCTCCAAG .............................. ATCATATATGATTCATGCAATGGATGTCAATATGGATG 1716509 30 100.0 37 AATATGGATG .............................. GGTTTATAGGCTTTTAGTTCTCCGCTGTGTATCGCTC 1716576 30 100.0 38 TGTATCGCTC .............................. CCGGCTTCACCTATCATCGCGAGAGTCGGAGCGTCTAC 1716644 30 100.0 36 GAGCGTCTAC .............................. CCTGAAAATCTTCATTCAATGCGGCTATGCCACTGC 1716710 30 100.0 36 ATGCCACTGC .............................. AATAAATTTTCCTTTTCCATTTATTTACCTCCTTTT 1716776 30 100.0 39 ACCTCCTTTT .............................. TCAAGCATTTCTTTCGGTAATGGTTCGCCGAAATCAATC 1716845 30 100.0 36 GAAATCAATC .............................. ATTTTCCTCCTTTATATGTATAAAAGACCTTTATAA 1716911 30 100.0 40 ACCTTTATAA .............................. GCCATATATACACCCCCTACAGGTAGCTTGGGGCAAACTC 1716981 30 100.0 36 GGGCAAACTC .............................. ATCTAAACGAAGAACAATTGCAAAAGCTAAATGACT 1717047 30 100.0 40 CTAAATGACT .............................. CATTGAAACCGAATGGGTTGAAGAAGGCGGTTTCTTTAGA 1717117 30 100.0 38 TTTCTTTAGA .............................. TACTATCTGTAAAATACTTGTAGCCTTGTCTTTTAATT 1717185 30 100.0 37 TCTTTTAATT .............................. CCAATCCATTCTTTCCGCATCTTGTACTGCTGATACC 1717252 30 100.0 36 TGCTGATACC .............................. TTTGTATAAAGTGAGGTAAATAGTAAATATATATGC 1717318 30 100.0 39 ATATATATGC .............................. AAATCAAAGAATCGGCAAAAGGAAAGACATACGAAATTG 1717387 30 100.0 37 TACGAAATTG .............................. TGCCTGCAATGTTCTCGATGGCATTGTCGAAGATGAG 1717454 30 100.0 37 CGAAGATGAG .............................. TCCTCCCCTTGCCATGTTATGGTTTCGCCCACTCTTT 1717521 30 100.0 36 CCCACTCTTT .............................. TCACCGTTAGGAAAGTTGATAGTGAACACGCTGTTA 1717587 30 100.0 36 CACGCTGTTA .............................. TACAATATACACAAGCAGAATTCTTACAAATAATAA 1717653 30 100.0 38 CAAATAATAA .............................. CAAAAAGGAGGAGTAGTTCGTTTTGAGGAAATAGACGC 1717721 30 100.0 37 AAATAGACGC .............................. AGTGTTCTATATGTATTTGCTTTTCCTAAGCTTTTTG 1717788 30 96.7 36 AAGCTTTTTG ....................A......... TTTGTATAAAGTGAGGTAAATAGTAAATATATATGC 1717854 30 100.0 40 ATATATATGC .............................. CGCTTTTTGCTACTTTGATTTACGCCATTTATTATTCAAT 1717924 30 100.0 39 ATTATTCAAT .............................. TGAACTGCACCTATCCGCCAGTTTCCAGTCATACTGGAT 1717993 30 100.0 38 CATACTGGAT .............................. TGATTTTTAATGTATTGTAATATTTCCATTTCCTTTTT 1718061 30 100.0 38 TTTCCTTTTT .............................. TGATTTTTAATGTATTGTAATATTTCCATTTCCTTTTT 1718129 30 100.0 36 TTTCCTTTTT .............................. GAGCCGGACGTGTGAAAAACTATATCCCGGAAGATC 1718195 30 100.0 37 CCGGAAGATC .............................. TAATTAATTAGCTTAAATAAGCTATAATTAATATTGA 1718262 30 100.0 36 TTAATATTGA .............................. AAATAAAATTGTAAGAATGAGTTAAGGGGTTCAAAA 1718328 30 100.0 39 GGGTTCAAAA .............................. TTTCCAGGCTCAAAAATAAACCTAATCATTGTTAAAACC 1718397 30 100.0 36 TGTTAAAACC .............................. TACGGACTTGCAACCGTCTATAACTTGTTGTTATAG 1718463 30 100.0 36 GTTGTTATAG .............................. AATCAATTTTGCTTTTAAATAGAGTTTAATGTATAC 1718529 30 100.0 37 TAATGTATAC .............................. GCATGTTTTAAACTGTCAAGTATTTTTACTTTACAGA 1718596 30 100.0 36 ACTTTACAGA .............................. CGGTGGATTAAATGAGCTTTATAATCTGCTGGATAA 1718662 30 100.0 36 TGCTGGATAA .............................. ATCAAACCCTGATAAATAGACGGCTAGATGCCATTT 1718728 30 100.0 36 GATGCCATTT .............................. TACTTGAGTCTGTCCTTGAAGGCATGGCTGAATACT 1718794 30 100.0 36 GCTGAATACT .............................. TATAGCAAAGGACAACGAAGTAAAAGAAAACTGGAA 1718860 30 100.0 36 AAAACTGGAA .............................. TCAAAAAACACTGCGTAACTCATTATGCATAACTCC 1718926 30 100.0 37 GCATAACTCC .............................. GCATCTGTCAATTTATCACGGATTGCAGTATCGATTT 1718993 30 100.0 GTATCGATTT .............................. GTGAATTCCG ========== ====== ====== ====== ========== ============================== 96 30 37 GTTTTTATCGTACCTATGAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.00,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [390,314] Score: 0/0.18 # # Final direction: F [6.05,0 Confidence: HIGH] >NC_009012 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2729745 29 100.0 39 NNNNNNNNNN ...T.....G......A.G.........G TTTATCAAAGCTTTTGAAAACAGTTGCCTGAAAATTTAG 2729813 29 100.0 37 NNNNNNNNNN ..............T.............. GTATTTGAACGGCACATCCTTCAAATCCGCACCATCG 2729879 29 100.0 38 NNNNNNNNNN ............................. ATGAGTATCAATTAAGATTATTACTTGAATTAAAGTGG 2729946 29 100.0 37 NNNNNNNNNN ............................. AGCGAGAATAACAGCCGAAACCCTTGGTTTCCAAAGG 2730012 29 100.0 38 NNNNNNNNNN ............................. GAAGACGACTACGATATAGATTACATTTATTGCGAAGG 2730079 29 100.0 38 NNNNNNNNNN ..............G.............. TTGCGCCTTCTCGCTTTTTGACAATGGACGATCTGCAG 2730146 29 100.0 39 NNNNNNNNNN ............................. AATTGCAAATGCTATACGGTGGCTCAAAAACCAGGGATG 2730214 29 100.0 39 NNNNNNNNNN ............................. ATGGGACCCAATAAGGGGAAAATTCGATATATTATTTTG 2730282 29 100.0 37 NNNNNNNNNN ............................. TGACAAAGAAGAAAACGGCATAACGCAATTGAGTTTG 2730348 29 100.0 38 NNNNNNNNNN ............................. AAGGATTGACTTATACAGAAACAACAACAGTTAGATTG 2730415 29 100.0 41 NNNNNNNNNN ............................. ACTTAAAGGTACTGTATATTGCAAACAGAATTCCAATAGAG 2730485 29 100.0 37 NNNNNNNNNN ............................. TTACACCTATAGCTGATAGAAAGATTGAGTACATAGG 2730551 29 100.0 37 NNNNNNNNNN ............................. CCATTGCCGTTTCTGTCTTCCCGGCTCCACAGGGCAG 2730617 29 100.0 40 NNNNNNNNNN ............................. GAAAAAGATATCTTATTCAGATATCTCAAATTTAAGGATG 2730686 29 100.0 39 NNNNNNNNNN ............................. GATATATTCAGATACATCCGGAACTATTGTTCTTACTAG 2730754 29 100.0 37 NNNNNNNNNN ............................. CGGAATGAACCAGTTCATAGCTTTGCAGGAAATGATG 2730820 29 100.0 39 NNNNNNNNNN ............................. AGTCGTAAGCGCAAGAGAATTGCATGAGAAGCTCGGTAG 2730888 29 100.0 42 NNNNNNNNNN ............................. GCCCAATTCCCGGATGATGACAACAACATGATCCGGAACATG 2730959 29 100.0 38 NNNNNNNNNN ............................. GCATCAGATACTTCTGCAGATATAGCACCCAAGCCCTG 2731026 29 100.0 40 NNNNNNNNNN ............................. TAGCGGCTTATCAATATTAGAATTGGGTTTACAATACGGG 2731095 29 100.0 40 NNNNNNNNNN ............................. GCTGTACATTTTGATTTTAATATAACAGAATTTCTCAAAG 2731164 29 100.0 38 NNNNNNNNNN ............................. TTCCTAAGTTTATCGAGACTTTTATTATTTACATCATG 2731231 29 100.0 37 NNNNNNNNNN ............................. AGACAGATCCTGGCGTCTCCCAGGCAACACGGAAGAG 2731297 29 100.0 40 NNNNNNNNNN ............................. GCATATCTGACCTTCAAGTTCAGATTTTCGCCTGAATCTG 2731366 29 100.0 38 NNNNNNNNNN ............................. ATTCGTTTATCTTTATCAAATCACTCCCTCCCTTCAGG 2731433 29 100.0 40 NNNNNNNNNN ............................. GCTGTACATTTTGATTTTAATATAACAGAATTTCTCAAAG 2731502 29 100.0 38 NNNNNNNNNN ............................. TGTAAACCTATTCGTCAACCAAAGTTAACAATTAAGTG 2731569 29 100.0 38 NNNNNNNNNN ............................. TCTTTCATTGTCGGATATTACGACAGCGAAAAAGAAGG 2731636 29 100.0 38 NNNNNNNNNN ............................. CACGATATCGTAGCCTTGGAATCCCAATTTTGAACAAG 2731703 29 100.0 39 NNNNNNNNNN ............................. GATGCATTTTTATTCGCTAAGAGATTCTCAGTGGATGTG 2731771 29 100.0 38 NNNNNNNNNN ............................. AACAAATTTGCTTGGTGATATGGCAAGCGGTGCCGAGG 2731838 29 100.0 41 NNNNNNNNNN ............................. GTGTCGCAAAGAAACTCGCCAATGGTAACTATATTTTTGTG 2731908 29 100.0 40 NNNNNNNNNN ............................. TTTCTTTAAGCATTGCTCTTTCATTCAAAGGAATACAACG 2731977 29 100.0 39 NNNNNNNNNN ............................. AGGAACTTGAATGGGAGATATGAAGGTGAAAGGATTATG 2732045 29 100.0 37 NNNNNNNNNN ............................. TTTAAGAATGTATTTTATATACTCATCCTCAGCCTGG 2732111 29 100.0 36 NNNNNNNNNN ............................. AACAATGATGACGTACCTGCCATCCTTCAGCTTGGG 2732176 29 100.0 38 NNNNNNNNNN ............................. ATAGCAATAGGTGGGCTTCAAAACACCTCGTCAGCAGG 2732243 29 100.0 40 NNNNNNNNNN ............................. TGGAGAAGTAGAATTTGAAAGAGTAGTTACGGTTGAGTAG 2732312 29 100.0 40 NNNNNNNNNN ............................. TAGAAAAGCTACTCGGTAAATCAAAATTTGCAGAATTGTG 2732381 29 100.0 38 NNNNNNNNNN ............................. AGAATGAACAGGATTTTCTAACGATTACGCTTCCAAGG 2732448 29 100.0 38 NNNNNNNNNN ............................. TATACTGGTCCAGTGAATGGTCCAGTGAATTTGAAACG 2732515 29 100.0 40 NNNNNNNNNN ............................. CGGAGAATATGTAGAATTAGGGAGGGGTTAGATGGAAGAG 2732584 29 100.0 38 NNNNNNNNNN ............................. GAAAGAAAAAGCGATACTTTTGATGCACTTGATGAAGG 2732651 29 100.0 37 NNNNNNNNNN ............................. TAACTGATGGAATCTATTACAAAAGAAAAAAGTTCAG 2732717 29 100.0 41 NNNNNNNNNN ............................. ATTTGCAACAAGGTGGAAATCACATCATATGGTTCGGCCTG 2732787 29 100.0 41 NNNNNNNNNN ............................. CACGCTACTGCTTGACGTACTCCCACTCTCTCTGCTTGTGG 2732857 29 100.0 38 NNNNNNNNNN ............................. GCAGAAAAAACAAACCAAGGCAATGCACTCACTATGTG 2732924 29 100.0 36 NNNNNNNNNN ............................. GAAAAAAGAGAATTTGATGGAAACGTGTTTTATTTG 2732989 29 100.0 40 NNNNNNNNNN ............................. TGGGCGGAGACCCACAGCTTGCTGGGAGCATCACGAATAG 2733058 29 100.0 37 NNNNNNNNNN ............................. AAGATTTAGGCATTATTGATATATTCGGTAGCCTTGG 2733124 29 100.0 41 NNNNNNNNNN ............................. GATTTAACAATACCAAACAATTTACCAAACTGTTCTTGAGG 2733194 29 100.0 36 NNNNNNNNNN ............................. CTTCAAGAAGCCAGAGAGCGAGCCTTGGCAGAATTG 2733259 29 100.0 37 NNNNNNNNNN ............................. TCTTTGATTACATACGTTTTGTCTGGCGCGACATCAG 2733325 29 100.0 36 NNNNNNNNNN ............................. GGAGGGTGGTGCTCCCCTCAGGGAGCCTTCCACCTA 2733390 29 100.0 37 NNNNNNNNNN ............................. GCCGCAAGGGGCGAAAGTAAAACCTCTTACACCTGAA 2733456 29 100.0 37 NNNNNNNNNN ............................. GTGATGGTGGATGTTTACCGAAAAAGAGATTGAGGAA 2733522 29 100.0 39 NNNNNNNNNN ............................. ATTAAGGGCGGAATAAACGGAACAATTGAATTATTTAAA 2733590 29 100.0 39 NNNNNNNNNN ............................. TTGGCACTTTAAAAAAATAAACAGTAACATTGAATTATA 2733658 29 100.0 40 NNNNNNNNNN ............................. GGCGATTACAAATACCGCCGGTATTGAAAGGAGGTATTGA 2733727 29 100.0 39 NNNNNNNNNN ............................. ATATTCAACAGGATAAAAGAAGAAATAGAATATTATTAA 2733795 29 100.0 39 NNNNNNNNNN ............................. TATTGTCGGGAAAGCAAATTGGACCGCAGGAACCGCGGA 2733863 29 100.0 39 NNNNNNNNNN ............................. GCTGCAGAAATATATCAAATCACAAAAGAGCCAATCGAA 2733931 29 100.0 37 NNNNNNNNNN ............................. AAAACTGAAATATGCAACAGCCAATGACAATACCTTA 2733997 29 100.0 37 NNNNNNNNNN ............................. GCAACTTGCGTCCAGCAGATACCATAGAGTATATTTA 2734063 29 100.0 39 NNNNNNNNNN ............................. TCCTTCTCCATCTTTGACAGTGTAATTTTCATTGTCAAA 2734131 29 100.0 38 NNNNNNNNNN ............................. ATTACTCTTAAATATATATTAACATATTTTTATTACAA 2734198 29 100.0 38 NNNNNNNNNN ............................. ATGGCTATTTTGAGTGGTTTGACCCCTCTTCTTGGCTA 2734265 29 100.0 37 NNNNNNNNNN ............................. TGAAAATCTAGGATATAGTATTGGTCAATGGTTCGGA 2734331 29 100.0 37 NNNNNNNNNN ............................. TATATGTTCCTTCTACGGCTAGGTACTATGAATTGGA 2734397 29 100.0 40 NNNNNNNNNN ............................. GCGCATCGTTCTTGTATTCAGGCAGTGGTCTTGAATGATA 2734466 29 100.0 36 NNNNNNNNNN ............................. TGGTACCCGTGTTTTTGTTGTCTATAATAAGACTTA 2734531 29 100.0 41 NNNNNNNNNN ............................. CAACAATATATTTGGCAGCCGATGAACCAGAATAATTCTCA 2734601 29 100.0 40 NNNNNNNNNN ............................. GGAACATGCTATACCTGAATTAGACGCATTCAGATACAGA 2734670 29 100.0 36 NNNNNNNNNN ............................. GGAATACTTTGCCATTATAGCTTTGTTCTGTGCCAA 2734735 29 100.0 37 NNNNNNNNNN ............................. GAGTTCTGATATTGGATTTGGAACACTTGATATAGTA 2734801 29 100.0 38 NNNNNNNNNN ............................. CCAAAAGTTCGGCAGCTCTGATTCTCTCTTTTGCGGAA 2734868 29 100.0 37 NNNNNNNNNN ............................. TTAGCGAAGCCTTTGGAGAATCGAATGTTGAATCTAA 2734934 29 100.0 37 NNNNNNNNNN ............................. TACTGCCAAAATCAGGGCTTGCATATTCTCCAAAGGA 2735000 29 100.0 39 NNNNNNNNNN ............................. ATAAGAATGACAAACAAAACTAGTTCAGTTGTTGGCCTA 2735068 29 100.0 39 NNNNNNNNNN ............................. TTGCCTGAATACAAGAACGATGCGCCGGAAGAACTAAAA 2735136 29 100.0 37 NNNNNNNNNN ............................. CAGATGAAAGTAGCATAGCTTCAGTTTTTTGCTTTGA 2735202 29 100.0 39 NNNNNNNNNN ............................. AAAAGAAATTGCAGATAGGGATGCACAGCTTGAGGAACA 2735270 29 100.0 40 NNNNNNNNNN ............................. CAACTCAAAAAATGCGTCTATTTCCTTTTTCCAACAATCA 2735339 29 100.0 38 NNNNNNNNNN ............................. TGACCTATAGAACTTGGTGATACATACAGTTCACCGTA 2735406 29 100.0 37 NNNNNNNNNN ............................. TGAACCTTTCACTTTATTTGGCTGTGTTACTTTTGTA 2735472 29 100.0 40 NNNNNNNNNN ............................. CAGGTTCAGGTTCCTAATAAGAGGGGCATAACAGCCCCTA 2735541 29 100.0 37 NNNNNNNNNN ............................. TTGAGATTCTCGCTCCAACGTTCTTCAAACCGTTTGA 2735607 29 100.0 37 NNNNNNNNNN ............................. AATATATTGCAGTCCATTGTCTTGTTGTTTATCTCTA 2735673 29 100.0 37 NNNNNNNNNN ............................. TAGAGAAGGATTATCATTATTTTCTTCTTTAGCAACA 2735739 29 100.0 40 NNNNNNNNNN ............................. CATACAGCCGTACAGGCGATTTGAGGTTCGTGCTCTTGCA 2735808 29 100.0 41 NNNNNNNNNN ............................. GTGTAGACCATACTCGCGAAACTCTAGCGGGTCCATATTAA 2735878 29 100.0 40 NNNNNNNNNN ............................. GCACCTTTTATCATATCCAAAATAATTTCCACTATCAAAA 2735947 29 100.0 39 NNNNNNNNNN ............................. AAAAGCAAATTTCTCGTCTAAAGCTTCCTTTATATCATA 2736015 29 100.0 39 NNNNNNNNNN ............................. GTTTTCAATTGGTTGCGTAAGAAACCCCAAGCTATCCGA 2736083 29 100.0 37 NNNNNNNNNN ............................. TGAAAGCGAAGCCCTTCCTAAAGGCTATAAAACTAAA 2736149 29 100.0 40 NNNNNNNNNN ............................. GCATATGCCAGTTTATACAATCTGAATGTTTCTCTGGTAA 2736218 29 100.0 37 NNNNNNNNNN ............................. AATCTGCGAACAAGTTAGCGGAAATCATCTAACAAGA 2736284 29 100.0 39 NNNNNNNNNN ............................. AGACAAGATTGATTTGCGAGAAGGTGGCTGCCGATGGCA 2736352 29 100.0 40 NNNNNNNNNN ............................. TCTTCCTTCCGATGTTTACGATTATTGGGTAATTATCAGA 2736421 29 100.0 42 NNNNNNNNNN ............................. CGATTGGGAAGATTTTGAAAGTCCGTATGAAGAGATGAAATA 2736492 29 100.0 38 NNNNNNNNNN ............................. TTCGGACTCCAAAAATCAACATTTTCGATTGTTAAGTA 2736559 29 100.0 37 NNNNNNNNNN ............................. TGCATCTTCTGTTTGGAACAACTTAGGCTTTCCTGCA 2736625 29 100.0 36 NNNNNNNNNN ............................. ACACCCTGCAATATATCCAATTACTTGGCGCATAGA 2736690 29 100.0 41 NNNNNNNNNN ............................. GTGATATATTTCACACAGCGAAAGTTTGGAGTGAAAGATCA 2736760 29 100.0 37 NNNNNNNNNN ............................. TGCAACAAGCATTGATACGTCAAAGTCAAAACAAGGA 2736826 29 100.0 37 NNNNNNNNNN ............................. TAACGATTCCGGAGAGTTGCATGGACTATCAACAAAA 2736892 29 100.0 38 NNNNNNNNNN ............................. AAGAAAATGAACGGTGGTTTGACAGAGATGAAATGTAA 2736959 29 100.0 39 NNNNNNNNNN ............................. TATAGGTGGACTTGTCGGTTATGTAAGAGACGGTGGTAA 2737027 29 100.0 37 NNNNNNNNNN ............................. GACTGATGAAGAAAAAGCCTTGGAGGTTGCAAGGATA 2737093 29 100.0 40 NNNNNNNNNN ............................. AGCATTTATACCGTCTGAGGGTTACTTTGAAGGGTTCCTA 2737162 29 100.0 37 NNNNNNNNNN ............................. AACCATGACACACAAAGTGAAATTCACGCACAGCGAA 2737228 29 100.0 34 NNNNNNNNNN ............................. ACGCCTGAAGAAGGAGCAGGCTGAAATCTACAAA 2737291 29 100.0 37 NNNNNNNNNN ............................. TTTGTAATGCCAATAAGATTTTTCTTGTACCGAATGA 2737357 29 100.0 37 NNNNNNNNNN ............................. TGATGAAGGACGCTGAAACAGGAATGTTCCAGGCTGA 2737423 29 100.0 39 NNNNNNNNNN ............................. TTTGTCGCGAATGCTGATCGTGCAGAATAGGTTCCCGTA 2737491 29 100.0 37 NNNNNNNNNN ............................. CCAGCATTCCGCCGACTATGGTGATCACTGGCAATAA 2737557 29 100.0 38 NNNNNNNNNN ............................. TGATTCTTCTGGGTGAAGACTACATCGTGATCGAACGA 2737624 29 100.0 37 NNNNNNNNNN ............................. CATCTATCCATTGGGATATTACTTCATCAAGTGCATA 2737690 29 100.0 39 NNNNNNNNNN ............................. GGACGACAAGGTCCAACTCATAGAAGCGCGATTCGGTAA 2737758 29 100.0 40 NNNNNNNNNN ............................. AAAAAGAATATGCTATGCTTCCTGAATCAACGAAGCAATA 2737827 29 100.0 38 NNNNNNNNNN ............................. AAAATTTCCCACAATAGCTTTTTGTTAGCCTTATCTTA 2737894 29 100.0 39 NNNNNNNNNN ............................. CACACAAAAAACGGTTCCGTCATATTCATCTGTCTGTCA 2737962 29 100.0 37 NNNNNNNNNN ............................. CCGACTTAAACAAATTACTGGAATAGCAGAATTATTA 2738028 29 100.0 38 NNNNNNNNNN ............................. TCGGTGCTGATGGATTACCGACTATTCGACGTGGACGA 2738095 29 100.0 41 NNNNNNNNNN ............................. CAAACCATTCTGCTACGGTCAATTTACTATTTGTTATTTGA 2738165 29 100.0 39 NNNNNNNNNN ............................. GTGGGTCTGGCTTATTATCAATTGGCAAGTTGTTTTCAA 2738233 29 100.0 37 NNNNNNNNNN ............................. TTTACTTTTTCCTGTAGCTCCTTTGGAGACTTGGCGA 2738299 29 100.0 38 NNNNNNNNNN ............................. TTTTAGATAGTATATAGCTTTATTTGACAAAGGAACAA 2738366 29 100.0 37 NNNNNNNNNN ............................. CAATGGCCCGGAGCAGTTCGCATGCTTAGTTGACAAA 2738432 29 100.0 38 NNNNNNNNNN ............................. ATTACCTCCCCTGTTTTTTTACATCTGACTCACCTATA 2738499 29 100.0 38 NNNNNNNNNN ............................. GCTAGAGAAGTAAAACCAAAGAAGCTAGGTCAAAATGA 2738566 29 100.0 38 NNNNNNNNNN ............................. GCTCTGATGGGTCTCCTCTATACCAAATTCTATTTCTA 2738633 29 100.0 37 NNNNNNNNNN ............................. GAATGGCAAAGCAAACTTAAAGAACTTCAAAAAGAAA 2738699 29 100.0 38 NNNNNNNNNN ............................. CTTAAAATTCAAAAGTACAAATCTCTACGCAATCCAGA 2738766 29 100.0 38 NNNNNNNNNN ............................. GTGGATTCAATCGGTGAACAAATAGCATTGAAAAACAA 2738833 29 100.0 39 NNNNNNNNNN ............................. TCGATAGGGTGGGTTCACACCTTCTACTACTTCTTGCCA 2738901 29 100.0 37 NNNNNNNNNN ............................. GGTTTTGGGCAGCAGTACCTTCTACAGACTCAAGTAA 2738967 29 100.0 37 NNNNNNNNNN ............................. ACGAAGCAGGTTTATACAGTTTGATATTGAAATCAAA 2739033 29 100.0 40 NNNNNNNNNN ............................. TTCCTAACTGTATCACTGGACGATTACACAAAGGTTTCAA 2739102 29 100.0 40 NNNNNNNNNN ............................. TTCGTTTTCAAGCTTGTCCATCTGCGTAATAATTTTGGAA 2739171 29 100.0 41 NNNNNNNNNN ............................. GCTGTTCTATTTCTGTTCTTATAGCATCTGCGTGAGCCTTA 2739241 29 100.0 38 NNNNNNNNNN ............................. TTTCGTACGACGGAAGAATTTCCAGCGAATTCAGAAAA 2739308 29 100.0 39 NNNNNNNNNN ............................. GAAGCAGCAAGAAGGGCTGGTTATAGCGAGAAAACAGCA 2739376 29 100.0 40 NNNNNNNNNN ............................. ACGTAAGATTCATAGCGGATTACCAGCTCAAATAGTAGAA 2739445 29 100.0 36 NNNNNNNNNN ............................. GGACGCTGGCCTGACTACACTTGTGATTTTTATGGA 2739510 29 100.0 37 NNNNNNNNNN ............................. AGCTAATTTCTACCGTTTCCGGTACAGGAATTATGCA 2739576 29 100.0 38 NNNNNNNNNN ............................. GAAATTGTATATGATTATGTAGCAGAACATTGCAAAAA 2739643 29 100.0 38 NNNNNNNNNN ............................. GGTTTGGTGATATTTTAGCCAGTATTGAAAGTTTGGGA 2739710 29 100.0 38 NNNNNNNNNN ............................. CTGGTTCTAGTGTTACATTCGTTACGAAGCAAGAGGTA 2739777 29 100.0 38 NNNNNNNNNN ............................. AAGAAGGTCAAAAAATATGGGATGAGACAGCAGAAGAA 2739844 29 100.0 40 NNNNNNNNNN ............................. CCATTAGATAGAGAATTGAAAAATTGCCTGCAAATGTAGA 2739913 29 100.0 37 NNNNNNNNNN ............................. TCTGAAGACAAAATCCGGAGGAGCAAACAACGATCCA 2739979 29 100.0 38 NNNNNNNNNN ............................. CCTAAAGAGGTGGGAGTCTTCTTGCTATTTTCTTAGTA 2740046 29 100.0 39 NNNNNNNNNN ............................. GCTAATGGGCGAAGGAGAGCGAAGAAAAGAATGGGGCAA 2740114 29 100.0 37 NNNNNNNNNN ............................. TTCGTACGACGGACAAATTTCCAGCGAATTCAGAAAA 2740180 29 100.0 40 NNNNNNNNNN ............................. TGGCGACGCTTACGAAAGAGCAAAAAGAGAAGCTGAGATA 2740249 29 100.0 36 NNNNNNNNNN ............................. TGTATTAGCATAACTCTCTATAAATGCTTCGTAATA 2740314 29 100.0 38 NNNNNNNNNN ............................. ATCGAAAGCAACTTCTTTTCTTGCTCAGCCAATATATA 2740381 29 100.0 40 NNNNNNNNNN ............................. AATAGCACGAAGAGGAACATAAGTTGTGCCGTTATAGTTA 2740450 29 100.0 37 NNNNNNNNNN ............................. CAAATATGCTGGGATTCCCAGTGCCAATGAACCGAAA 2740516 29 100.0 39 NNNNNNNNNN ............................. GAAGCAATAGACTTGTATGCAAAATATGGGATTGTGCAA 2740584 29 100.0 38 NNNNNNNNNN ............................. GCAAACGCAGGGATTCCGCCAAATACCAATGCCCCAAA 2740651 29 100.0 37 NNNNNNNNNN ............................. GGGTCCGGCTTATTATCAACCGGTAGATTGTTTTCGA 2740717 29 100.0 39 NNNNNNNNNN ............................. CTTATCTTTCACAACTTCCTCCGGCCAAAAGGCTTCCTA 2740785 29 100.0 36 NNNNNNNNNN ............................. GACAGCAGTAGAACTTGCAAAAACGAAGCTGCAAAA 2740850 29 100.0 38 NNNNNNNNNN ............................. TCAACAGCAAATTCAAGCTTGCACGCTTCAAACTCTTA 2740917 29 100.0 38 NNNNNNNNNN ............................. TAGAGTGGTCTAACTTTTTTTCTTTCAGCGGCTTGAAA 2740984 29 100.0 40 NNNNNNNNNN ............................. GGAAGACAAACTTGATGCTGCCAGCGCCAATGCATGATGA 2741053 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 169 29 38 TTTCAATTCCTCATAGGTACGATAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.97%AT] # Reference repeat match suggestion: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [725,168] Score: 0.18/0.18 # # Final direction: R [0.18,6.05 Confidence: HIGH] >NC_008786 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1370669 36 100.0 29 GTGCGCTGCG .................................... AAGGCCAGGGCCGACCTTGACGGTTCCGC 1370734 36 100.0 30 ACGGTTCCGC .................................... CAGAAGGGTCAATTTGATTAATCCATCAAA 1370800 36 100.0 30 ATCCATCAAA .................................... CTGCTCCTGCTCCAGTGGTCGATGCCGCGT 1370866 36 100.0 30 GATGCCGCGT .................................... GCGTTTCCATGCCATATCGGCCTCGGCCTG 1370932 36 100.0 30 CCTCGGCCTG .................................... GACATGACGCTAAAAGCCCGGCTTGCGTCT 1370998 36 100.0 30 GCTTGCGTCT .................................... ATTTCACCCCATGGGAAAAGTTCATTTTAA 1371064 36 100.0 30 TTCATTTTAA .................................... CATGACTTGTGCCCATGACGCCTGCAGATC 1371130 36 100.0 30 CCTGCAGATC .................................... GCAAGCTGAACAAGGCCGGCGACACTGCCA 1371196 36 100.0 GACACTGCCA .................................... GTGAATTCTT ========== ====== ====== ====== ========== ==================================== 9 36 29 ATTGTAGCTCACTGGGATATGCGCACTGGCCGGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [8,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.50,-4.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [41.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [204,471] Score: 0.18/0.18 # # Final direction: R [0,0.82 Confidence: HIGH] >NC_008786 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1608695 28 100.0 32 TCGGTACGCG ............................ GGTTGCATGGCGTCCCCCAATGCGCCACTGAC 1608755 28 100.0 32 CGCCACTGAC ............................ GCGACCATCGGCCGCCGATTGGCGCGTGAAAA 1608815 28 100.0 32 CGCGTGAAAA ............................ ATCCACTGCGCGCGCGCAACGCTGCACCACTC 1608875 28 100.0 32 TGCACCACTC ............................ GCCGCCGGCCTTGCTCATCTTGCCGTCTACGC 1608935 28 100.0 32 CCGTCTACGC ............................ TTGGACGGCGCGTATTACGCCCGGTACATCCT 1608995 28 96.4 32 GGTACATCCT ..........A................. GCTTCGGCGGCCTGCAACCGCGCAGCCTCCTC 1609055 28 100.0 32 CAGCCTCCTC ............................ CACGATCGGGCCGAAGTATTCCGGCGCCGTCA 1609115 28 100.0 32 GGCGCCGTCA ............................ AAAGGCAAGCGCACGCTGGAGAGCCTGGAATC 1609175 28 100.0 33 GCCTGGAATC ............................ TACACGCCCGGGCGCTTCGCATCGGGCAACTAC 1609236 28 100.0 32 GGGCAACTAC ............................ GCATTTTGCACGCAGCGCAAAGGAACCACCGT 1609296 28 100.0 33 GAACCACCGT ............................ ATACGAATCAGGGCCGGCAGCGTGCACTTGCTT 1609357 28 100.0 32 GCACTTGCTT ............................ GACGGCGCCGTGCCGATGTTGATTCTTTTGAA 1609417 28 100.0 32 TTCTTTTGAA ............................ GCTTCGGTGATTGCGTGAATGACGTTCATGAT 1609477 28 100.0 32 CGTTCATGAT ............................ CCGACGGCTTGATGCTTCACGCCACGCCATAC 1609537 28 100.0 32 CACGCCATAC ............................ GCCTGCACACATCAGGGCACGTAGATCGTCCG 1609597 28 100.0 32 AGATCGTCCG ............................ CAAAGGAAAGCATCGTGTCTCCAAACTTCATC 1609657 28 100.0 32 AAACTTCATC ............................ CCGGGTCATCCCGCACCCGTAAGCACCAGACT 1609717 28 100.0 32 GCACCAGACT ............................ GCGTGGATTACGTTCATAACGGTTCCTAGGTT 1609777 28 100.0 32 TTCCTAGGTT ............................ GCCGGACGTGTTACTGGCCCTAGGTGGTAATT 1609837 28 100.0 33 GGTGGTAATT ............................ CTTGAATGTACGCCATGTTTCCCCATACACCCG 1609898 28 100.0 32 CATACACCCG ............................ ACAGGGAAATCCGGTCGCCGCTGACTTTGAAC 1609958 28 100.0 32 GACTTTGAAC ............................ GTCGATATCGATACCCCGAAGTATCGCTTGGT 1610018 28 100.0 32 ATCGCTTGGT ............................ TAGCCGCCATCCCGGCATCGTCCGGGCCGTGT 1610078 28 100.0 32 CGGGCCGTGT ............................ TATTGTGCGCGCCCTGCTGCTGCGTTCCCGAT 1610138 28 100.0 32 CGTTCCCGAT ............................ TGGAGATTGTGGAGATAACATATCCCCCAATT 1610198 28 100.0 32 TCCCCCAATT ............................ ATCGTGCGTGATCAAGTAGCGTGCGTCTTTTC 1610258 28 100.0 32 GCGTCTTTTC ............................ TTGCGGGTGCGGGACGATCCGGAAAGCAAATT 1610318 28 100.0 31 AAAGCAAATT ............................ TCTGACGCGGCGCCGGGCACTTTGTTGGCGT 1610377 28 100.0 32 TTGTTGGCGT ............................ GGTCGCCATTGCGGTCGCAGATATCCGGGGCA 1610437 28 100.0 32 ATCCGGGGCA ............................ TAATCGTCAAACATCGGGTTCATCAGGTGATT 1610497 28 100.0 32 TCAGGTGATT ............................ GAGATAACATATCCGCCCATTGGTGCTGTAAT 1610557 28 100.0 633 GTGCTGTAAT ............................ AGCCTCTCCAACCACAATTCCTGTTCTTGCTTTTTCTGAGCTGCCTATCCGGCAGTGAACGCGAAGGAAAGCACCGTGGCTCCCAACTTCATTTTTCTGAGCTGCCTATCCGGCAGTGAACCCCACACAGTGCGCACACGGCACGATTCATCCTTTCTGAGCTGCCTATCCGGCAGTGAACGATGCCGGGATTCTGGAACGCTTTGGGGATTGTTTCTGAGCTGCCTATCCGGCAGTGAACGGCCTGAACTACGTGCTGCACTACGAAGCCATTTTCTGAGCTGCCTATCCGGCAGTGAACAGTCCCGTTTTTTCTCGATCGACCAGCCGATTTTTCTGAGCTGCCTATCCGGCAGTGAACCGAACGGCGGCGCTTGAGCAAGCCAGGCGACGTTTCTGAGCTGCCTATCCGGCAGTGAACACGGGCAGGCCAGATCTGGACAACATCATCAATTTCTGAGCTGCCTATCCGGCAGTGAACGGCTGTTCTGATTCCTGTTCCTGTTCCTGTTTTTTCTGAGCTGCCTATCCGGCAGTGAACGCTTCTTTCCCGACGTGCGCAACGACGGTATCTTTCTGAGCTGCCTATCCGGCAGTGAACCCATGAGGGGGATATCATCATCAATCTTTCCT 1611218 28 100.0 AATCTTTCCT ............................ CTGCCCGGGG ========== ====== ====== ====== ========== ============================ 33 28 50 TTTCTGAGCTGCCTATCCGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [97,1055] Score: 0.18/0.18 # # Final direction: R [0,1.6 Confidence: HIGH] >NC_009012 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3788076 37 100.0 35 ATAATATTAA ..................................... CCCTTACAGTGGCGATATTTGTGGAATGAGGCTGT 3788148 37 100.0 37 ATGAGGCTGT ..................................... ATCTCTTGTAGAATTTTCTCTGCCTTTTCTAAGCTAC 3788222 37 100.0 36 TCTAAGCTAC ..................................... ACAGTTATCATAGGCTATCCTCCTTATAAATGTTAA 3788295 37 100.0 37 TAAATGTTAA ..................................... AATAATCCAAAAGCATTTCTACTGCTTTTGGAAATTT 3788369 37 100.0 37 TTGGAAATTT ..................................... ATATTTACTCCGGCATCCCTCAGCCGGCGAAAAAGGT 3788443 37 100.0 35 CGAAAAAGGT ..................................... ATAATTCTTCTCGTTTTTGTTTTAATTCGTTTATT 3788515 37 100.0 36 TTCGTTTATT ..................................... GTAATAAGCTGTCCAATCACCTCCTAGTTTTCCTGG 3788588 37 100.0 38 GTTTTCCTGG ..................................... TAGAACTTGAAAGAGAATCCTTCAGGGAGAGTGGTACT 3788663 37 100.0 37 GAGTGGTACT ..................................... TATCTTCAAAGTAATAGCTGTTATATGTGTCAAGTTC 3788737 37 100.0 36 TGTCAAGTTC ..................................... TTAATTCATCGCCATTTTTGCCTATAAGTCCATAAA 3788810 37 100.0 36 AGTCCATAAA ..................................... CTTCTTCGAAGCTACTAAAGGTGGCCGTGCAGTAGT 3788883 37 100.0 36 GTGCAGTAGT ..................................... ATAGATAAGGCTATTGCAAGAGTAGCGAATGTGCTA 3788956 37 100.0 38 GAATGTGCTA ..................................... CAAATATTTCAGAAGCTATTGCGGATATATTTACTGTG 3789031 37 100.0 39 ATTTACTGTG ..................................... TTGAATTCCTGCAATGTGGCAGGCTTTTCTCAACCTAGG 3789107 37 100.0 38 TCAACCTAGG ..................................... GTCCCTGTGATTTCAGCCAATTTATCGCATTTTCAATT 3789182 37 100.0 39 ATTTTCAATT ..................................... ACATACAGTTCGGTGTTTTCATCTAGTGCTACATTTATT 3789258 37 100.0 36 TACATTTATT ..................................... CCAGCAGGTTGAGCGTTAGGCAGGTTTCCCTGCCCG 3789331 37 100.0 35 TCCCTGCCCG ..................................... GTGGAAGATGCGTTGTTTATGTCAGCAATTTCCGG 3789403 37 100.0 36 CAATTTCCGG ..................................... CAAAATGGCAGGTGGTAAAACCACAGCTAATACATC 3789476 37 100.0 36 CTAATACATC ..................................... GTTTCATCAACATCCATCTCGTCTACATAGAACTCA 3789549 37 100.0 37 ATAGAACTCA ..................................... ATAACATATTTTAAAGCAAAAAGCAGAAAATCACTGG 3789623 37 100.0 35 AAATCACTGG ..................................... TGATTGTAAAGGAATATGTATCCCCAAGCCTTACA 3789695 37 100.0 38 AAGCCTTACA ..................................... TGGATAGTGCAAACATAGATGAAGCCTCCGTAGGCCTT 3789770 37 100.0 37 CGTAGGCCTT ..................................... TCTATTTCAGCAACAATATATTTGGCAGCCGATGAAT 3789844 37 100.0 37 GCCGATGAAT ..................................... ATCATTGTATATATCTTTGGAGTAACGTATAATACCC 3789918 37 100.0 37 TATAATACCC ..................................... TTGATAATGTTCTTTTCAATAGTGCCAAGGTCTAATC 3789992 37 100.0 37 AGGTCTAATC ..................................... ACAGGAACGTGCGTTCTCTGGACGAGGTAACTATCGT 3790066 37 100.0 35 TAACTATCGT ..................................... TAGCACACAACAGCAAAAAAACAAAGAAAAAAAGA 3790138 37 100.0 36 GAAAAAAAGA ..................................... GCACCAACTTGTCTTTTTTGATGAGGCTTGCAACAA 3790211 37 100.0 39 CTTGCAACAA ..................................... ATAATGTGCTGCTGGATGCCCGTACAGTCTTCCACTGTA 3790287 37 100.0 39 TTCCACTGTA ..................................... TAGATTGCGAAAAGCCTGCCACATTGCAGGTCACAAGGT 3790363 37 100.0 35 GTCACAAGGT ..................................... TTGTTTTTTCACTTATAGACTTAATTCAGTGTGGC 3790435 37 100.0 41 TCAGTGTGGC ..................................... CTTTCTCAATGGCTGACTTCGATGCGCCCTGGGCAAGCATT 3790513 37 100.0 36 GGCAAGCATT ..................................... GTGCTGCTATCTCGGCTATTCTTTCATCTATACTCA 3790586 37 100.0 35 TCTATACTCA ..................................... TTTGCTCTTTATCCGGTGCTCTTATCTCATTCACA 3790658 37 100.0 36 CTCATTCACA ..................................... ACGAGAACGGGAAAGCAATATTGAGAAAACCCTTTG 3790731 37 100.0 35 AAACCCTTTG ..................................... TTGGCGGCATAGCTTCTATTATAGAAAATTCTACT 3790803 37 100.0 36 AAATTCTACT ..................................... TTATATCGAAGAAAAAAGAACAAAAGTGAGGCGATT 3790876 37 100.0 39 TGAGGCGATT ..................................... ATAATTTCGGGAGTGTAGAATTTCAACTCGGCAATAAGA 3790952 37 100.0 37 GGCAATAAGA ..................................... GAATGATTGAATCAATAACCATTATTGCCTGCAATTA 3791026 37 94.6 CCTGCAATTA ...................--................ CATACTTCTA ========== ====== ====== ====== ========== ===================================== 41 37 36 GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.16%AT] # Reference repeat match suggestion: F [matched GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-2.00,-1.80] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [80.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [3366,407] Score: 0.18/0.18 # # Final direction: F [5.86,0 Confidence: HIGH] >NC_008786 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1612299 28 100.0 32 NNNNNNNNNN ............................ GACTGAATGCCGCGCCCTGATCCGTCAGATAT 1612359 28 100.0 32 NNNNNNNNNN ............................ GTGAATGTGAAGGGGCGCCCAGTGCGCGGGCT 1612419 28 100.0 32 NNNNNNNNNN ............................ GCAAAATCGCTGTTGGCGACCATCTTTCCGAA 1612479 28 100.0 33 NNNNNNNNNN ............................ CTATTCCTGAGCAGATTCAGGTATCATTACCAT 1612540 28 100.0 32 NNNNNNNNNN ............................ TGTTGAGCGATAATCTATCGAAAGACGGGACA 1612600 28 100.0 32 NNNNNNNNNN ............................ ACCGGATACAGTTCGACGCCGGTGATTTGCTC 1612660 28 100.0 32 NNNNNNNNNN ............................ GCCGAGTGTATGGGTTGTTGGCGAACCAGCAT 1612720 28 100.0 32 NNNNNNNNNN ............................ AGATTCGACGAACAAGCGAAAGACAGTGCCGC 1612780 28 100.0 33 NNNNNNNNNN ............................ GCGCACGTGCTTGCTGATAATCTGCGCGTACTC 1612841 28 100.0 32 NNNNNNNNNN ............................ ACATGGCAGGATACAAAGTTTTACACTTTTGG 1612901 28 100.0 32 NNNNNNNNNN ............................ ACTGGCCGCTGGGCGAGCCGCAATCTTGGCTT 1612961 28 100.0 32 NNNNNNNNNN ............................ TTCCTCGGTTGGGCTGATCAAGGGATTGGGGT 1613021 28 100.0 32 NNNNNNNNNN ............................ GCAGTACGTGTCTCGCGCCTACCTGCCCTGCC 1613081 28 100.0 32 NNNNNNNNNN ............................ GCGCACGTTCTTGCAGATAATCTGTGGGTTTT 1613141 28 100.0 32 NNNNNNNNNN ............................ GATTCGTACTTGAATAACGTCCTTTTCGTCAA 1613201 28 100.0 33 NNNNNNNNNN ............................ ATGAACGCCACGCTGCGCGCCATCATGGCCGAA 1613262 28 100.0 32 NNNNNNNNNN ............................ AAATCACCGGCGTCGAACTGTATCCGGTGACG 1613322 28 100.0 32 NNNNNNNNNN ............................ ACCGATGCCGCACGTTGCGAAGCAGCGATGAT 1613382 28 100.0 32 NNNNNNNNNN ............................ TCATCAATATGCGCAGCGACAGCGGCCCTGCA 1613442 28 100.0 32 NNNNNNNNNN ............................ TTGATTGACGTGTTGATCAATCGACAAACAAA 1613502 28 100.0 32 NNNNNNNNNN ............................ GCATGGTCATGAATGAAGAACAGATCGCACGC 1613562 28 100.0 32 NNNNNNNNNN ............................ CGCGCAAGATCGTCGCGCAGCGCCACCTGGTG 1613622 28 100.0 32 NNNNNNNNNN ............................ GAGCCGGTCGAGTTTCCAGATTACGAGCGTGT 1613682 28 100.0 32 NNNNNNNNNN ............................ GTAGATAACATTCATGTCAATCTCCCAAAAAT 1613742 28 100.0 32 NNNNNNNNNN ............................ AGGGTTGTTGCTGAACTGGGATGATCTTGCTC 1613802 28 100.0 32 NNNNNNNNNN ............................ TAGAAGCGCTGCACGGCATCCACGGCCGCGAT 1613862 28 100.0 32 NNNNNNNNNN ............................ AACCAGGACACACCAAAGCCCATGACGAACCC 1613922 28 100.0 33 NNNNNNNNNN ............................ AATGCTGGCGAGCGGCGCGACACTGAAAGCAAC 1613983 28 100.0 32 NNNNNNNNNN ............................ ACGCCAGCGGATGGGCGTGGATGCGTGCGCGT 1614043 28 100.0 33 NNNNNNNNNN ............................ CATGAGCATGTACGACAGCGACCCCCGCGTTTC 1614104 28 100.0 32 NNNNNNNNNN ............................ AATAAGCAACGCTGTCCACTCTTGCGGGAGGG 1614164 28 100.0 32 NNNNNNNNNN ............................ CCAGAATGCGGGCCTCAACCCGCATTCGGTTC 1614224 28 100.0 32 NNNNNNNNNN ............................ TTATTTCGCGAATTGTCGGAAGTTTCTTTTTC 1614284 28 100.0 32 NNNNNNNNNN ............................ AGTAGAAACCCTATAGACATGACGTTTTTGGT 1614344 28 100.0 32 NNNNNNNNNN ............................ GCACACGCACGTGCACGCACGTGAGCGCGCCG 1614404 28 100.0 32 NNNNNNNNNN ............................ GCATGGTCATGAATGAAGAACAGATCGTACGC 1614464 28 100.0 32 NNNNNNNNNN ............................ GGCACGAAGATGGACCGTCCTGGTCTGAATAT 1614524 28 100.0 32 NNNNNNNNNN ............................ CCAAAACCCGATCACTTTGCATTTCACCCAGT 1614584 28 100.0 32 NNNNNNNNNN ............................ ACGTGTTGATCAATCGAAACCAACTTTTTTTA 1614644 28 100.0 31 NNNNNNNNNN ............................ CAGAATGCGGGCCTCAACCCGCATTCGGTTC 1614703 28 100.0 32 NNNNNNNNNN ............................ GATCTTTTTTTCTCTTTCCAGCGAATCCGCTA 1614763 28 100.0 32 NNNNNNNNNN ............................ ACTTGGCATCACGGCCCTATCGCCGCCAGGAG 1614823 28 100.0 32 NNNNNNNNNN ............................ TTGCCGAATCTAAGTAGAAACCCTGATGACAT 1614883 28 100.0 32 NNNNNNNNNN ............................ GTGCTGAGCAGCAGCGGTTCATCGTCCGCTTC 1614943 28 100.0 32 NNNNNNNNNN ............................ TTGTTTCAGGAGAGCGTTTCGCGTCTGGTATT 1615003 28 100.0 32 NNNNNNNNNN ............................ GCAACCAATTTTTGCCGCCAAAATGTCAATAT 1615063 28 100.0 32 NNNNNNNNNN ............................ CGAAATCCGAATTCGCGTGCAAGGCCCCGGAC 1615123 28 100.0 32 NNNNNNNNNN ............................ AATGATGCACTTTGGTGCCTTGATTCTTTCGA 1615183 28 100.0 33 NNNNNNNNNN ............................ ATTATCGCTTCAATGGCGACTAAATTGGGCATT 1615244 28 100.0 32 NNNNNNNNNN ............................ CGCGCAAGATCGTCGCGCAGCGCCACCTGGTG 1615304 28 100.0 32 NNNNNNNNNN ............................ AATCGACGGAGAAAAGATCAAGATTCCAGGAT 1615364 28 100.0 32 NNNNNNNNNN ............................ GCGGATATGCATTGATCAGCGGCGGAGACTAT 1615424 28 100.0 32 NNNNNNNNNN ............................ AGGAAGGCCGTAGCGCGGCTTTCGACCATTCA 1615484 28 100.0 32 NNNNNNNNNN ............................ TTCTGCATTCACGCGACTGACGAGACCGACCC 1615544 28 100.0 32 NNNNNNNNNN ............................ GGCCCACGGTTTGACAGATCGACAGCGGCAGT 1615604 28 100.0 32 NNNNNNNNNN ............................ GGCACGAAGCTGGACCGTCCTGGGCTGAATAT 1615664 28 100.0 32 NNNNNNNNNN ............................ CTGGACGATATTGTTCGAATAACCAAAGGATT 1615724 28 100.0 32 NNNNNNNNNN ............................ ACCTCAAATAAGCAACGCCGTCCACTCTTGCG 1615784 28 100.0 32 NNNNNNNNNN ............................ TCACATACCTGCGCCGTGGATGTCTTCGATTC 1615844 28 100.0 32 NNNNNNNNNN ............................ ATCAATGACTTAGCAGACCCCGTCAGCTGGTC 1615904 28 100.0 32 NNNNNNNNNN ............................ AATCGACGGAGAAAAGATCAAGATTCCCGGAT 1615964 28 100.0 32 NNNNNNNNNN ............................ CCAGAATGCGGGCCTCAACCCGCATTCGGTTC 1616024 28 100.0 32 NNNNNNNNNN ............................ TGGGATGATCTTGCTCGACAAGAAATTCACTC 1616084 28 100.0 32 NNNNNNNNNN ............................ TGCGGTACACCGGAGGCGGGGGCTTTCAAATT 1616144 28 100.0 32 NNNNNNNNNN ............................ ATTTTCTCCAAAAGTTTCATTATCAAGTAGCC 1616204 28 100.0 32 NNNNNNNNNN ............................ AATGGTCGAAAGCCGCGCTACGGCCTTCCTAC 1616264 28 100.0 32 NNNNNNNNNN ............................ GCCGGAGGTAATAGTTTGCGGCGATTCGGAAT 1616324 28 100.0 32 NNNNNNNNNN ............................ TACGTCGACCCGAAGACCGGCGCCACCTGGAC 1616384 28 100.0 32 NNNNNNNNNN ............................ GCATGGTCATGAATGAAGAACAGATCGCACGC 1616444 28 100.0 32 NNNNNNNNNN ............................ GGTAAACCCGTATAATCCGTCCCTCATATGAT 1616504 28 100.0 32 NNNNNNNNNN ............................ TGGATACTGGCGTGTACAAAACGTGACTGAGC 1616564 28 100.0 32 NNNNNNNNNN ............................ CGCGCCGAGCGCGACGACGGCTACAAGCAGAT 1616624 28 100.0 32 NNNNNNNNNN ............................ AACAACGACCAGGGCTACGACCGGCTCGACCT 1616684 28 100.0 32 NNNNNNNNNN ............................ CGGTGATGCAGGACGGGCTTGCGTTGATCGAG 1616744 28 100.0 32 NNNNNNNNNN ............................ GGGCTGCGCGCAAGATCGTCGCGCAGCGGGCT 1616804 28 100.0 32 NNNNNNNNNN ............................ GTATATCACTCATATATCAGCCGTATTCATTC 1616864 28 100.0 33 NNNNNNNNNN ............................ TCTCACTGAGAATATCGACACCAGCACCTGCAT 1616925 28 100.0 32 NNNNNNNNNN ............................ TTCAGTGTCGCGCCGCTCGCCAGCATTTCCCT 1616985 28 100.0 32 NNNNNNNNNN ............................ GCGTGGTGCCGGCGGCAATGGTGATGCACGCC 1617045 28 100.0 34 NNNNNNNNNN ............................ ACGGCGGCGCCGGCAGCACCAACTTTGGCGCCAC 1617107 28 100.0 32 NNNNNNNNNN ............................ TCAGATTCCCGCTCACGCAGCGCCTGCGCGCA 1617167 28 100.0 32 NNNNNNNNNN ............................ TTTGCGGTGACCGGCGAATCGTGCTGCATCTC 1617227 28 100.0 32 NNNNNNNNNN ............................ ACTTTCTGATGCAGTGAAACTGGGGCCGTCGG 1617287 28 100.0 32 NNNNNNNNNN ............................ GATAGTAGTCTGATGGCCTTGCCTGGCTTTCT 1617347 28 100.0 32 NNNNNNNNNN ............................ TCAAGCGCCAGCGCAGCGCTCTCGATGAGCGC 1617407 28 100.0 32 NNNNNNNNNN ............................ CGCAGATTATCTGCAAGCACATGCGCGGCAGC 1617467 28 100.0 33 NNNNNNNNNN ............................ AAGCGAACAGCGGAAGCGATCTGATTATGTTGC 1617528 28 100.0 32 NNNNNNNNNN ............................ ATCAGGGCGAAGGTAGGGGATAGTAGTCTGAT 1617588 28 100.0 32 NNNNNNNNNN ............................ ACGAAGCCGGAGATTGATTATGTTTCGGTTCT 1617648 28 100.0 32 NNNNNNNNNN ............................ GCAGCGTCAGGGGCGTGATCGTGCCACGGCAT 1617708 28 100.0 32 NNNNNNNNNN ............................ GTCCGTTGATAAAAACGATGCTGATCAAGCGC 1617768 28 100.0 32 NNNNNNNNNN ............................ GTCAATACCACACAATAGAATCTGCTGCCAAC 1617828 28 100.0 32 NNNNNNNNNN ............................ GGCCGTCGAAGGCGACATCCGGCCTACGGGCA 1617888 28 100.0 32 NNNNNNNNNN ............................ CCGCCACCAGGCGCTCGTAGGCGGCGGTTTCA 1617948 28 100.0 33 NNNNNNNNNN ............................ AAGGTCGCGCCCAAGTACGTCGACCCGAAGACC 1618009 28 100.0 32 NNNNNNNNNN ............................ AGTTGCTTGGCCTTGCTCCAAGACTTCGGGAC 1618069 28 100.0 32 NNNNNNNNNN ............................ GGTAAACCCGTATAATCCGTCTCTCATATGAT 1618129 28 100.0 32 NNNNNNNNNN ............................ GTGTACGTGAAGGGGCGCCCAGTGCGCGGGCT 1618189 28 100.0 33 NNNNNNNNNN ............................ TGTGATCGACCTTCAGAATCTGATGCAGGCGTG 1618250 28 100.0 32 NNNNNNNNNN ............................ CAGCATCATACCATCGTCGTCATGCGTGATCA 1618310 28 100.0 33 NNNNNNNNNN ............................ ATAATCATGTACAAATTCTGGTATTCAGAAACT 1618371 28 100.0 32 NNNNNNNNNN ............................ AGCTGATTATGTTGCGTGAAGATCACGATGAC 1618431 28 100.0 32 NNNNNNNNNN ............................ TCGATGGGCGTCTATCCCTTCGCGCTCATACT 1618491 28 100.0 32 NNNNNNNNNN ............................ GGGTTTTCCCTGCACCGGGTTTTCCCCTAGTA 1618551 28 100.0 32 NNNNNNNNNN ............................ CTCGGGAAGCGGCAAGGCCGGCGCTCCAGGTA 1618611 28 100.0 32 NNNNNNNNNN ............................ TAATCGGTGGGCATATTCAAGCATTTTCGCTT 1618671 28 100.0 32 NNNNNNNNNN ............................ AGAAGGCCCTAGAAGGCCAGGGAAGGCCATCA 1618731 28 100.0 32 NNNNNNNNNN ............................ AAATGCGCCTTGCGCCACCCCGTCCGCCGTAG 1618791 28 100.0 32 NNNNNNNNNN ............................ AGTCCCGCCACCGGGCTACTCACAATCTCGTT 1618851 28 100.0 33 NNNNNNNNNN ............................ TATCGCGCCGCTATTATGAGGGACGCGCACCCG 1618912 28 100.0 32 NNNNNNNNNN ............................ GCAAGGGGCATGACATGCCACTAGTAACCATC 1618972 28 100.0 32 NNNNNNNNNN ............................ CGCGCCCAGGGCCGCGTCGGCGGGCGGCGCAT 1619032 28 100.0 32 NNNNNNNNNN ............................ GGCAGGGTCAATCGCACCTACACCGACATCGC 1619092 28 100.0 32 NNNNNNNNNN ............................ GGAATTGAAAGAAGGCGACACGCTCGTAATCT 1619152 28 100.0 32 NNNNNNNNNN ............................ TTTGAATGTACGCCACGTTTCCACCTCCGCCA 1619212 28 100.0 32 NNNNNNNNNN ............................ CGATTGACGTGTTGATCAATCGAAAATTTAGG 1619272 28 100.0 32 NNNNNNNNNN ............................ GCCTGGCCGCTGCGCGCGCCCAGGGCCGCGTC 1619332 28 100.0 32 NNNNNNNNNN ............................ CCGGCGGCTCTTGACACTTCCCGCGCTCATCG 1619392 28 100.0 32 NNNNNNNNNN ............................ TAGGAAGGCCGTAGCGCCGCTTTCGACCGTTC 1619452 28 100.0 32 NNNNNNNNNN ............................ ATTCTTTCGAAGGGGTCGGTGCGGTTCATGAT 1619512 28 100.0 32 NNNNNNNNNN ............................ TTGCAGATTATCAGCAATAACCGCCGCGCCGG 1619572 28 100.0 32 NNNNNNNNNN ............................ GGCTATATTCGCTGCGGCAGAAAGCGGGGGCT 1619632 28 100.0 32 NNNNNNNNNN ............................ CAGATAATCGTCCCACATTTTGTCGAGCGCCG 1619692 28 100.0 32 NNNNNNNNNN ............................ TAATACGCCCGGCCTGTATGTATCTGCGTCGC 1619752 28 100.0 32 NNNNNNNNNN ............................ ATTGCGATGACGGTGCAGGTTTTTGCGCTTCT 1619812 28 100.0 32 NNNNNNNNNN ............................ CGATTGTTCGCTTGTTTGTCGAAGCGAGTAGT 1619872 28 100.0 33 NNNNNNNNNN ............................ ACTAAGCGCAGAATGAGCAGTAGCGCAAAAACC 1619933 28 100.0 33 NNNNNNNNNN ............................ ATCAGCACGCGCAGCAAAGTCGGGAGCGTGCAG 1619994 28 100.0 32 NNNNNNNNNN ............................ GGCCTTCTAGGGCCTTCTGGCGCGGCAGGGCA 1620054 28 100.0 32 NNNNNNNNNN ............................ AATGTCTCCGCGCGCGGAAGGCGGTTGAAAGA 1620114 28 100.0 32 NNNNNNNNNN ............................ TGTTGGTGATCCCACCTGGTGCCTGCGGGTGC 1620174 28 100.0 32 NNNNNNNNNN ............................ GCCGCCATTCCCCGGCATCGCCCGGGCCGTGT 1620234 28 100.0 32 NNNNNNNNNN ............................ ACAGCCAACTAACCAACCCGAGCCGGCCTCCG 1620294 28 100.0 38 NNNNNNNNNN ............................ CATCCCCCGGCCCCGGCCCCGGCCCCGGCCCCGGGTCA 1620360 28 100.0 32 NNNNNNNNNN ............................ GTGCCGATGTTGATTCTTTTGAAGGGGTCGGT 1620420 28 100.0 32 NNNNNNNNNN ............................ CGCATCGGCGGGCGGCGCATGGTCATGAATGA 1620480 28 100.0 32 NNNNNNNNNN ............................ ACCAAGCCGGTTCGCCGAATACCCAAACGCTT 1620540 28 100.0 32 NNNNNNNNNN ............................ TAACTGAGAATATCGACACCAGCACCTGCATC 1620600 28 100.0 32 NNNNNNNNNN ............................ CTCTCGTTTATACTTTTCCGCCGCTCCGTTGT 1620660 28 100.0 32 NNNNNNNNNN ............................ CATACACAGAAACTACAGAAATTGGCGCGTAC 1620720 28 100.0 32 NNNNNNNNNN ............................ ACCAAGCCGGTTCGCCGAATACCCAAACGCTT 1620780 28 100.0 32 NNNNNNNNNN ............................ ATGTCATGTCATTATGAACTAGCAGCAATTTC 1620840 28 100.0 32 NNNNNNNNNN ............................ GGGTCAGGGTCAGGGTCAGCGCAGCGCCGCCT 1620900 28 100.0 32 NNNNNNNNNN ............................ AGCTGCCGCGCCTGGTCAGCGGTCTGGACACC 1620960 28 100.0 33 NNNNNNNNNN ............................ GCAAAAATTCATTGGTAACCTCGAAAGAATCAA 1621021 28 100.0 32 NNNNNNNNNN ............................ ATGTAGCACTCCCAAAAACGTCATGTCTATAG 1621081 28 100.0 32 NNNNNNNNNN ............................ AGCTGCGCGATGAGCTGACCGACGTGCAAGCT 1621141 28 100.0 32 NNNNNNNNNN ............................ TGACCGGCAAGCTGCCGCGCCGTGCTGCTGCT 1621201 28 100.0 32 NNNNNNNNNN ............................ GGGATGTGTTAGAGCCAAGCGTTTGGGTATGT 1621261 28 100.0 32 NNNNNNNNNN ............................ GGCACCTCCCCGTCGTTTGAAGACAGCACCCC 1621321 28 100.0 33 NNNNNNNNNN ............................ GCTGCGCGCAAGATCGTCGCGCAGCGCCGCCTG 1621382 28 100.0 32 NNNNNNNNNN ............................ GGAATTGAAAGAAGGCGACACGCTTGTAATCT 1621442 28 100.0 32 NNNNNNNNNN ............................ TTCTACAGACTACTTTGTACGAATCGAAATCT 1621502 28 100.0 32 NNNNNNNNNN ............................ TTTTACTAGGCTTTCCGAAGTGATCATCCTGT 1621562 28 100.0 32 NNNNNNNNNN ............................ ACGGCCCTATCGCCGCCAGGAGGCCGTAGGAA 1621622 28 100.0 32 NNNNNNNNNN ............................ GTATATCACTCATATATCAGCCGTATTCATTC 1621682 28 100.0 32 NNNNNNNNNN ............................ GCCCGCGCCATCGGCATAATCTTCAGCGACGA 1621742 28 100.0 32 NNNNNNNNNN ............................ TACGCCATATTCCCCCATACACCGGGCGGATA 1621802 28 100.0 32 NNNNNNNNNN ............................ GCGGCGACGGCCTCGCGGCATGCGCGGTGCGC 1621862 28 100.0 32 NNNNNNNNNN ............................ GCGCTGCTGGGCGCTGAATGGGCGCCGCTGGT 1621922 28 100.0 32 NNNNNNNNNN ............................ GGTGCGCAATCGCTGACCAGGTCGCCATGAGC 1621982 28 100.0 32 NNNNNNNNNN ............................ CTTTCTAGCGGCCCGTGGCAGGTAGAAGGGCC 1622042 28 100.0 32 NNNNNNNNNN ............................ GTGCTACTCATAATCGCGTGGGCTTTGGATAT 1622102 28 100.0 32 NNNNNNNNNN ............................ CGCCGGTTCTTGCTGTTGCGCTCGTCTTGATC 1622162 28 100.0 32 NNNNNNNNNN ............................ AAGTGTCAAAAGACGACGACAGTATGCGTCTT 1622222 28 100.0 32 NNNNNNNNNN ............................ CGCTGCGACTCGTCGCTGAAGATTATGCCGCG 1622282 28 100.0 32 NNNNNNNNNN ............................ GGCGGGTAAGCACGCAGAATCTGATTCGCGAA 1622342 28 100.0 32 NNNNNNNNNN ............................ TAGCCCGGGCGTATTCATTGTCCACGCCATAG 1622402 28 100.0 32 NNNNNNNNNN ............................ CCCGGGGCTTGCAAGTCCACCGGGACATGTAT 1622462 28 100.0 32 NNNNNNNNNN ............................ GCCCGCGCCATCGGCATAATCTTCAGCGACAA 1622522 28 100.0 32 NNNNNNNNNN ............................ AGGTTGCGAAGTTTTACACTTTAGGGGCTTGC 1622582 28 100.0 32 NNNNNNNNNN ............................ GAATGCTGGCACGCTTCGCATTTTGACGGGGC 1622642 28 100.0 32 NNNNNNNNNN ............................ CGGGCTGCTGCAAAGGCGCTGGCGCGGCAACC 1622702 28 100.0 32 NNNNNNNNNN ............................ CGCACGCACGTGCAGATGCAGGTCAAGGTCAA 1622762 28 100.0 32 NNNNNNNNNN ............................ AATGTGTTTCGCGACAGCGTCGCGATATGCGT 1622822 28 100.0 32 NNNNNNNNNN ............................ ATCGTCCAGAATGCGGGCCGCAACCCGCATTC 1622882 28 100.0 32 NNNNNNNNNN ............................ AATGATGCCCGCGCGGCGCTTGCCGCCAAGGA 1622942 28 100.0 32 NNNNNNNNNN ............................ GCGGGCTGTGGAAACACATGGCCCGCATCATT 1623002 28 100.0 33 NNNNNNNNNN ............................ GCGGTGATTCAGGTCGGGCTTGCGTTGATCGAG 1623063 28 100.0 32 NNNNNNNNNN ............................ ACCAAGCCGATTCGCCGTATACCCAAACGCTT 1623123 28 100.0 33 NNNNNNNNNN ............................ GTCGATCACATGCCGATCAGCCTTTTCCGCCAG 1623184 28 100.0 32 NNNNNNNNNN ............................ AAGCCGCAGCGACCCGCAGCGGGTCAGCATCG 1623244 28 100.0 32 NNNNNNNNNN ............................ GAAGGAGTAAAATCATGAGCGAATATGTGAGC 1623304 28 100.0 32 NNNNNNNNNN ............................ GGGGAAAATGCGGATTTCGATTCGTACAAAGT 1623364 28 100.0 32 NNNNNNNNNN ............................ CGCCATTTGCTGCCCAGCAGCGCCAGGGCATC 1623424 28 100.0 32 NNNNNNNNNN ............................ AATAAGCAACGCTGTTCGCTCTGTCGGGCGGT 1623484 28 100.0 32 NNNNNNNNNN ............................ GCGCGCCCAGGGCCGCATCGGCGGGCGGCGCA 1623544 28 100.0 32 NNNNNNNNNN ............................ TGGAGGCATTCTTTCTGCCGACCTGCTCGGAT 1623604 28 100.0 32 NNNNNNNNNN ............................ AGTGACCTGCCGCTTCAATACCAGGTGCAGAT 1623664 28 100.0 33 NNNNNNNNNN ............................ GGCGACCACCGCCGCGCAGGTGGCTCGGTACCG 1623725 28 100.0 32 NNNNNNNNNN ............................ AAATCAGGGCTTATCCCATAATCACCCGCGAT 1623785 28 100.0 32 NNNNNNNNNN ............................ CTGCTCGCCGCCCGCTAGCTGCGGCCCGACGT 1623845 28 100.0 32 NNNNNNNNNN ............................ CGTGCAACCGGTCTTGCGTTTCCCCATCGTGA 1623905 28 100.0 32 NNNNNNNNNN ............................ TGCAGCAGATGCCACATCGCACATCATGAGAA 1623965 28 100.0 32 NNNNNNNNNN ............................ TTTTACGTTGAAATCGGCCAAACCGCCATGTT 1624025 28 100.0 32 NNNNNNNNNN ............................ GCGCTGCGCGAAAGTCACAGAGATATGCAGCT 1624085 28 100.0 32 NNNNNNNNNN ............................ GCCAGCAAGTACTACGGCGTGCCCCGCGTTGT 1624145 28 100.0 32 NNNNNNNNNN ............................ AGGCCGGCAATTGTCCGATCACGCATCTGACC 1624205 28 100.0 33 NNNNNNNNNN ............................ CCGGCTGCGATTTCTACTTCGTCGCGTATCAGT 1624266 28 100.0 32 NNNNNNNNNN ............................ GATATATTGGTCAATTCTGTACCGCGCAGGCT 1624326 28 100.0 32 NNNNNNNNNN ............................ TTCCGTCAAAAGTCCGCACGTCATCCCAAATT 1624386 28 100.0 33 NNNNNNNNNN ............................ GCCGAACCCCAGGGCCAAGCCCATCGCCATCGC 1624447 28 100.0 32 NNNNNNNNNN ............................ ACGATCTGGATTGCCCAGTTCGTGGGCAAAGA 1624507 28 100.0 32 NNNNNNNNNN ............................ CACTGGCGCGCAGTCTGATGCATTCACGATCT 1624567 28 100.0 32 NNNNNNNNNN ............................ CCAGAATGCGGGCCTCAACCCGCATTCGGTTC 1624627 28 100.0 32 NNNNNNNNNN ............................ GCTGCACGCACCGAGGCCGCGCGCTGCGCCGA 1624687 28 100.0 32 NNNNNNNNNN ............................ AGTTTTCAAATGGAAATACGGAGACGACGAAT 1624747 28 100.0 33 NNNNNNNNNN ............................ TGGCCGGTTTTTGCGGGCCTCGTTCAGCACCAG 1624808 28 100.0 32 NNNNNNNNNN ............................ AGACAGCCCCATTCCGCATCGAACCCGAGTTC 1624868 28 100.0 32 NNNNNNNNNN ............................ AATATCAAAGTGATCTTTTCGGCCATGAAGAT 1624928 28 100.0 32 NNNNNNNNNN ............................ AGTTGGAACCCCCGGCGCGCCACCGACGCGGT 1624988 28 100.0 32 NNNNNNNNNN ............................ CTTGATTGCAATATTCGACAAGCTGAATACTT 1625048 28 100.0 32 NNNNNNNNNN ............................ GGCATCAGTCACGTACGTGCTGCACGCAACGA 1625108 28 100.0 33 NNNNNNNNNN ............................ CAATATGTGCCATGCAGTAGCCGCCACTGCCGG 1625169 28 100.0 32 NNNNNNNNNN ............................ GCAGTCTGTATCTTCTTTCTCGACGGGATTTT 1625229 28 100.0 32 NNNNNNNNNN ............................ GCGCTAAGGGCCGCATCGGCGGGCGGCGCATG 1625289 28 100.0 32 NNNNNNNNNN ............................ TAACTGATAATATCGACACAAGCACATGCATC 1625349 28 100.0 32 NNNNNNNNNN ............................ GATGATTCGTGCTAGTCTGACAGCAGATCGTA 1625409 28 100.0 36 NNNNNNNNNN ............................ CGTGCGCTCACGTGCGTGCGTGCGTGCGTGCGTGCA 1625473 28 100.0 33 NNNNNNNNNN ............................ ACGCAGCCGAGCGTTTCTTTATATGAATGCGCG 1625534 28 100.0 32 NNNNNNNNNN ............................ GATTAATGACAGCTTCGCTATCGAAAGCTATC 1625594 28 100.0 32 NNNNNNNNNN ............................ TGGGATGATCTTGCGCTGCAAGAATTGCGATC 1625654 28 100.0 32 NNNNNNNNNN ............................ ATCTGGCATGACCGCCGGGGGCTAGCGATAGT 1625714 28 100.0 33 NNNNNNNNNN ............................ GCCGGCGGCGCTTTTTGCAAAGCGGGCACGTTT 1625775 28 100.0 32 NNNNNNNNNN ............................ GCAACGGCTCGATCAGAGGCGGCGGCGGATGG 1625835 28 100.0 32 NNNNNNNNNN ............................ CGCACCGATGCCGCGCGCTGCACCGATGCCCT 1625895 28 100.0 32 NNNNNNNNNN ............................ TGCCGGTCGACCTTGGTGCGCATGCTCAACGC 1625955 28 100.0 32 NNNNNNNNNN ............................ AGTTGGAACCCCCGGCGCGCCACCGACGCGGT 1626015 28 100.0 32 NNNNNNNNNN ............................ TATGAGATAATGCCGGGCTTCGGCCCGGCAAT 1626075 28 100.0 33 NNNNNNNNNN ............................ GCTGCAAATGGCCCTAGCGTGCCGGGCCTCGTT 1626136 28 100.0 32 NNNNNNNNNN ............................ GCGGGGCAGTTCGGGCGGTGGGTGTACGTGAA 1626196 28 100.0 33 NNNNNNNNNN ............................ GTTTTGCTAGGCTTTCCTAAGTGATCATCCTGT 1626257 28 100.0 32 NNNNNNNNNN ............................ ATGGCGATGGGCTTGGCCCTGGGGTTCGGCAC 1626317 28 100.0 33 NNNNNNNNNN ............................ ACGTATTATGAAGATCACTTCAGCGACAACGAA 1626378 28 100.0 32 NNNNNNNNNN ............................ GATTTCTTGATTAGTGAGCATGATTTTCCCCT 1626438 28 100.0 33 NNNNNNNNNN ............................ CTTCGGCCGGCCTTTTCATCGCCGGCTTCGAGG 1626499 28 100.0 32 NNNNNNNNNN ............................ GTTCCTTCGTTGAAAGGCGTAGATCGTATCAA 1626559 28 100.0 32 NNNNNNNNNN ............................ GAATGTACGCCACGTTTCCACCGCCGCCGGGT 1626619 28 100.0 32 NNNNNNNNNN ............................ ACTGTAGCACCCCAAAAACGTCACGTCTATAG 1626679 28 100.0 32 NNNNNNNNNN ............................ AACCGTGGGCCGCATCCCCGGCCACGGCACCT 1626739 28 100.0 32 NNNNNNNNNN ............................ GACATGACATGACATCCAGCCCGCCCTGCGCG 1626799 28 100.0 32 NNNNNNNNNN ............................ CGATAAAATCACGCGCATTTTCTTCGCTGAGT 1626859 28 100.0 33 NNNNNNNNNN ............................ GCAGCCCTGACCCTGACCCTGACCCTGACCCTA 1626920 28 100.0 32 NNNNNNNNNN ............................ ATTCGCAATCTGCGCAGCAATCTATCGGCAAA 1626980 28 100.0 32 NNNNNNNNNN ............................ CGTGCGGCAATCTTGCCCTGGCTTTCCAACGA 1627040 28 100.0 32 NNNNNNNNNN ............................ GCGGATATTCATTGATCAGCGGCGGAGATTAT 1627100 28 100.0 32 NNNNNNNNNN ............................ CCGATTATCATTATCAGGACATTCTATTATAA 1627160 28 100.0 32 NNNNNNNNNN ............................ ATGCCAAAGCGGCTGGAGAAATCTGCTGCGCG 1627220 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 249 28 32 TTTCTGAGCTGCCTATCCGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1054,131] Score: 0.18/0.18 # # Final direction: R [0.18,0.74 Confidence: MEDIUM] >NC_008789 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 695980 36 100.0 34 NNNNNNNNNN TC.AC............................... GTACCAGTGGCTCAGTGCTCGAACGCTGCTCGGT 696050 36 100.0 35 NNNNNNNNNN .................................... CCGGCATGAACGGCAAGGGAACCCAAAGTACCGCC 696121 36 100.0 35 NNNNNNNNNN .................................... CCATGCTTGTCAGTCAACCCAGCCTTACCGAAGCC 696192 36 100.0 34 NNNNNNNNNN .................................... GTACCAGTGGCTCAGTGCTCGAACGCTGCTCGGT 696262 36 100.0 35 NNNNNNNNNN .................................... CCGGCATGAACGGCAAGGGAACCCAAAGTACCGCC 696333 36 100.0 35 NNNNNNNNNN .................................... CCATGCTTGTCAGTCAACCCAGCCTTACCGAAGCC 696404 36 100.0 34 NNNNNNNNNN .................................... TCGTGGACCTCGGGCGGCCGAGCGATCCCACTTT 696474 36 100.0 38 NNNNNNNNNN .................................... TTGGTGGGAGCATGGAGGTCGGTGTCGATGGCCACTTC 696548 36 100.0 35 NNNNNNNNNN .................................... CAAAACACGGTGAGCATGTTGGTCATCCGTCAGGT 696619 36 100.0 36 NNNNNNNNNN .................................... AGAGTTTGTTCGCCTACCCTACGACCCGGAGACCTA 696691 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 11 36 35 GTCTTAATCCCTTTTCCAACAGGGCTAGGTTCGGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [7,11] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.70,-6.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [55,225] Score: 0.18/0.18 # # Final direction: R [0,1.33 Confidence: HIGH] >NC_008786 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1610617 28 100.0 33 GTTCTTGCTT ............................ GCGAAGGAAAGCACCGTGGCTCCCAACTTCATT 1610678 28 100.0 32 CAACTTCATT ............................ CCCACACAGTGCGCACACGGCACGATTCATCC 1610738 28 100.0 32 CGATTCATCC ............................ GATGCCGGGATTCTGGAACGCTTTGGGGATTG 1610798 28 100.0 32 TTGGGGATTG ............................ GGCCTGAACTACGTGCTGCACTACGAAGCCAT 1610858 28 100.0 32 ACGAAGCCAT ............................ AGTCCCGTTTTTTCTCGATCGACCAGCCGATT 1610918 28 100.0 32 CCAGCCGATT ............................ CGAACGGCGGCGCTTGAGCAAGCCAGGCGACG 1610978 28 100.0 32 CCAGGCGACG ............................ ACGGGCAGGCCAGATCTGGACAACATCATCAA 1611038 28 100.0 32 ACATCATCAA ............................ GGCTGTTCTGATTCCTGTTCCTGTTCCTGTTT 1611098 28 100.0 32 GTTCCTGTTT ............................ GCTTCTTTCCCGACGTGCGCAACGACGGTATC 1611158 28 100.0 32 CGACGGTATC ............................ CCATGAGGGGGATATCATCATCAATCTTTCCT 1611218 28 100.0 AATCTTTCCT ............................ CTGCCCGGGG ========== ====== ====== ====== ========== ============================ 11 28 32 TTTCTGAGCTGCCTATCCGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [2019,1055] Score: 0/0.18 # # Final direction: R [0,1.01 Confidence: HIGH] >NC_008789 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1261385 28 100.0 65 CTCATGGGGT ............................ CACCATGCCTGGCGCTTCCCAAAAGCCGGCGAATCAAAACCTTGCGAACCAGAGGAGGTTCGATA 1261478 28 78.6 59 AGGTTCGATA ------...................... TGCGACCCCTGGCGATTCCCAATTCGTTTTCATTCAGTCGCTTGCAGAACAGAGGGGGT 1261565 28 100.0 62 CAGAGGGGGT ............................ TAGCGATGCGTTCGTTATTGCGTACACCCGCAGAATCAGGCCACTGCGAACCATGCCCTTTC 1261655 28 89.3 62 ATGCCCTTTC ............A.....C......G.. TAGCGACCTTTTTGATTTTGCGTGGACCGGGATTATCAGCAGGTTGCACTTTATGCTCTGCT 1261745 28 100.0 59 ATGCTCTGCT ............................ CACCACGCCTTGCGCTTCCCAAAAGCCGGCGAATCAACACGCTGCGAACCAGGGGGGTT 1261832 28 96.4 62 CAGGGGGGTT .........................A.. TATCGCCCCTTTCGATTTCGCGTAACTCAGGGGTATCAACAGGTTGCAACTTCTGCCCTGTC 1261922 28 96.4 59 CTGCCCTGTC ............A............... CACCACGCCTGGCATTTCCCAAAAGCTGGCGAATCAACACGCTGCGAACCAAACGGGGC 1262009 28 96.4 59 CAAACGGGGC ............C............... CACCACCCCACATTCTGCCCATTTTCCGCCTGATCAGCGTTTTACTGAACAGACGGGCG 1262096 28 96.4 CAGACGGGCG .A.......................... TATCGAGCCGT ========== ====== ====== ====== ========== ============================ 9 28 60 CGATACCCCCCTTGTATGAGCCGGGTGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [570,1230] Score: 0.18/0.18 # # Final direction: R [0.41,0.92 Confidence: MEDIUM] >NC_008789 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 715061 36 100.0 34 TCCTCGGCGA .................................... GAGCTTGGCAAGGAGATCAAGGAGGAGGAGTCCC 715131 36 100.0 35 GAGGAGTCCC .................................... AAGGGACACTCCGGAAAGAGTGGCCCCGTTGGGAG 715202 36 100.0 CCGTTGGGAG .................................... TCCTCGACTC ========== ====== ====== ====== ========== ==================================== 3 36 34 GTCTTAATCCCTTTTCCAACAGGGCTAGGTTCGGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [7,11] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.70,-6.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [43.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [987,455] Score: 0.18/0.18 # # Final direction: R [0.18,1.01 Confidence: HIGH] >NC_009012 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3813209 37 100.0 36 CTCGAGGACT ..................................... CTTTTTTTATCTCGTTATCTTCACCGTCTGTGTATC 3813282 37 100.0 37 TCTGTGTATC ..................................... ATTTCTCATATTCAATTTTTACCTTTTCCATTTTTTA 3813356 37 100.0 40 CCATTTTTTA ..................................... ATCTTGGGGTGCAAGAGGTCGCTGGTTCAAATCCAGTCAC 3813433 37 100.0 37 ATCCAGTCAC ..................................... ATGGGCATGCTCATATGGTGTATCCCTCAACGCTATA 3813507 37 100.0 37 CAACGCTATA ..................................... CTATCTGTTGCGATTCTCCGCCACTGGGATTATCACC 3813581 37 100.0 37 GATTATCACC ..................................... ATTCACAAAATCAGCACTCAAGATGGGAAGTGACTTG 3813655 37 100.0 36 AAGTGACTTG ..................................... ATCATACTACCCATAAAACCTTCTAATTGCTTTAGC 3813728 37 100.0 37 TTGCTTTAGC ..................................... TTTTCCTTACAATTGTTAAACATCCAAATATCGTCAT 3813802 37 100.0 36 ATATCGTCAT ..................................... CGCACATTTCTATCCCTATACTGTTGCGGTTGGTAA 3813875 37 100.0 38 CGGTTGGTAA ..................................... TATGTATCATAATGCACGTGGCACTAACTGTAAGACTT 3813950 37 100.0 36 TGTAAGACTT ..................................... ACGACAACATGAGAAGAAAAGGGGATGAAGCACAGA 3814023 37 100.0 36 GAAGCACAGA ..................................... TCTTCTCTTAAAGCACTACCAGTATCTTCTACTATT 3814096 37 100.0 36 TTCTACTATT ..................................... TTGTATGTATTTTATTAATATAGTGTGCTTGTAATT 3814169 37 100.0 37 GCTTGTAATT ..................................... GGATTTGTCAAGTCTGCTAAAATAGCGGGCGGCAAAA 3814243 37 100.0 36 GGCGGCAAAA ..................................... CCTTCTCCCCATTTACCACCGGGCAAATTAACTGTA 3814316 37 100.0 36 ATTAACTGTA ..................................... GTTAATCCCAAATTATGCTCAAAAGAAAAAAACCAA 3814389 37 100.0 37 AAAAAACCAA ..................................... AATATTGGAATCCAAAATAACCTTCAATTTTCCACCA 3814463 37 100.0 35 TTTTCCACCA ..................................... GTGACGTTTTGGCGTCTATTGAAAATCTAGGATAT 3814535 37 100.0 36 TCTAGGATAT ..................................... TTTCACATGCATAATATGTGAAATAGCGACCGAACA 3814608 37 100.0 35 CGACCGAACA ..................................... AACCTCCTTTTTATATTTCTGGATCATCATCATAA 3814680 37 100.0 36 ATCATCATAA ..................................... CAGTATTGCATTGTTATTCCTCGCTTTCTTTTTGTT 3814753 37 100.0 36 TCTTTTTGTT ..................................... ATACACTTCAAGAGAATAATGTCCAGTTCGTGTCGG 3814826 37 100.0 37 TTCGTGTCGG ..................................... ATGGTGATGAAGTGAGGTATGAAGCTGGAAGCGGAGA 3814900 37 100.0 36 GAAGCGGAGA ..................................... TTTTATAGTAGATTAAGTTTTCTGCGTTAAAATAAT 3814973 37 100.0 38 TTAAAATAAT ..................................... ATTGTCTTGAACTCAGGGTCTATATACCGCACCAAGCA 3815048 37 100.0 38 GCACCAAGCA ..................................... CTTCGGATAATCCGTCTTCTCGTTTAATTCTTAAGCCA 3815123 37 100.0 37 TCTTAAGCCA ..................................... ACATATACGAAGGTTTAAACAGGACAGCAGAGCAAAG 3815197 37 100.0 38 CAGAGCAAAG ..................................... GACTACATTCTTTTAATTTTTAAAAAAGAAATATTAAA 3815272 37 100.0 39 AAATATTAAA ..................................... AATCTTCTGCGAGCAGAAGGAGTTCGTTTCTGTTGCAAC 3815348 37 100.0 39 CTGTTGCAAC ..................................... CCCAAAGAAAGCGCATGATAGGGTCTTTAGGTGGCTTCG 3815424 37 100.0 35 GGTGGCTTCG ..................................... ATATTACAGTAACAACTAAAGCAGGACATAAAAGT 3815496 37 100.0 37 ACATAAAAGT ..................................... TACATGATATTACCTCCTATTTTTATTTTTCTTCCAG 3815570 37 100.0 38 TTTCTTCCAG ..................................... AGCATCCCTACTTAAAGAGACTGGGGGCATATAACCCC 3815645 37 100.0 41 ATATAACCCC ..................................... TTCAATCGTGGCCTCCAGGGAACGGGCGTAAAACAGTTCTT 3815723 37 100.0 37 AACAGTTCTT ..................................... ATAGAAGGGGCTTAAGCCCTTTTTATTCTGACCTGAA 3815797 37 100.0 37 CTGACCTGAA ..................................... AGGAAGCAGAGGATTACGTACGTCAGAAAACAGACTT 3815871 37 100.0 35 AAACAGACTT ..................................... TTTTGTCAAGCCATTGATACATCCTTTAATGTCTA 3815943 37 100.0 38 TTAATGTCTA ..................................... GTATAGCACAGGCCCAAGTAAAAGAAAGGAGTTCATCA 3816018 37 100.0 36 GAGTTCATCA ..................................... CTACAGCTATAGCTTGCTTGAATACAAACTCAACGA 3816091 37 100.0 36 AACTCAACGA ..................................... GTCCCTCCTTATGCTTCAACATTGATTGCTACGCCT 3816164 37 100.0 38 TGCTACGCCT ..................................... AACCTTACTATGATGTTATAACATACAAAGGTTGTAAA 3816239 37 97.3 AGGTTGTAAA ............T........................ CTCAAACTCAGTGATACTAAGTATTTTAAAAGAAAA ========== ====== ====== ====== ========== ===================================== 42 37 36 GTTGAAGAGGTACTTCCAGTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.16%AT] # Reference repeat match suggestion: F [matched GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC with 97% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-0.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [294,166] Score: 0/0.18 # # Final direction: F [5.41,0.37 Confidence: HIGH] >NC_008942 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 839385 25 100.0 39 NNNNNNNNNN ......................... GCTGCGAGGATATTCTGTTCGCGCTGGATCAGAGTCGTG 839449 25 100.0 41 NNNNNNNNNN ......................... CCAAATTCAAAGGCATGAACTGGGTGATCCGACCTGTCGTG 839515 25 100.0 47 NNNNNNNNNN ......................... TGTTGTTTTCAAAATTATCGCATTAACTAATCTATCATCTTGTCGTG 839587 25 100.0 39 NNNNNNNNNN ......................... TGTTGTCTCTGACGACCTCTTCGCGTGGCAAAAGTCGTG 839651 25 100.0 38 NNNNNNNNNN ......................... GATACGATTGAATCCAAAGCCACGACGATCAAGTCGTG 839714 25 100.0 39 NNNNNNNNNN ......................... TACCGGTAATACATACGTCGCTAAACAGTGGTAGTCGTG 839778 25 100.0 39 NNNNNNNNNN ......................... ACAGTGTATGTACCTGAATATCCTTGAACTGTAGTCGTG 839842 25 100.0 42 NNNNNNNNNN ......................... ATACTGGGCGCCGTATCCGGACACAACCGCCCCGCGTCGTGC 839909 25 100.0 40 NNNNNNNNNN ......................... TTGCGATCTGATTATAAGACATACCTTTTTTATGTCGTGC 839974 25 100.0 40 NNNNNNNNNN ......................... ATATATATGGTGTTGGAATCATCAAAACCATCAGTCGTGC 840039 25 100.0 41 NNNNNNNNNN ......................... CAAGACAAAGAGGACAAAATGACAACCGATCCCGGTCGTGC 840105 25 100.0 41 NNNNNNNNNN ......................... CTGTTTCCTTCGGTGGGACTGGTGCCACATCTGAGTCGTGC 840171 25 100.0 41 NNNNNNNNNN ......................... ATCTCCTTTCTTGTATAGTAATAATAGTATTCAAGTCGTGC 840237 25 100.0 41 NNNNNNNNNN ......................... ATGTCTTCTTTGTTCTGTGTCATTCTAATCTCCAGTCGTGC 840303 25 100.0 39 NNNNNNNNNN ......................... CTTCGACGCCTGATATACCGTTAAGTTTAGACGTCGTGC 840367 25 100.0 39 NNNNNNNNNN ......................... CAAGACTCGCGTATAGATATAGCCGAAATATAGTCGTGC 840431 25 100.0 41 NNNNNNNNNN ......C.................. GAATCTGAGTTCATGCCGCGGGTAAAGCGGTATCGTCGTGC 840497 25 100.0 41 NNNNNNNNNN ...TT.................... CTCAACATCAACGAGGGAGATATCCTTGGAGTCCGTCGTGC 840563 25 100.0 1 NNNNNNNNNN ....T.................... NNNNNNNNNN ========== ====== ====== ====== ========== ========================= 19 25 40 CCCCCGTGGGCACGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [5,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [58.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [203,408] Score: 0.18/0.18 # # Final direction: F [5.18,0.18 Confidence: HIGH] >NC_009012 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2732651 30 96.7 36 TTGATGAAGG -............................. TAACTGATGGAATCTATTACAAAAGAAAAAAGTTCA 2732717 30 96.7 40 AAAAAGTTCA G............................. ATTTGCAACAAGGTGGAAATCACATCATATGGTTCGGCCT 2732787 30 96.7 40 GGTTCGGCCT G............................. CACGCTACTGCTTGACGTACTCCCACTCTCTCTGCTTGTG 2732857 30 96.7 37 TCTGCTTGTG G............................. GCAGAAAAAACAAACCAAGGCAATGCACTCACTATGT 2732924 30 96.7 35 CTCACTATGT G............................. GAAAAAAGAGAATTTGATGGAAACGTGTTTTATTT 2732989 30 96.7 39 TGTTTTATTT G............................. TGGGCGGAGACCCACAGCTTGCTGGGAGCATCACGAATA 2733058 30 96.7 36 ATCACGAATA G............................. AAGATTTAGGCATTATTGATATATTCGGTAGCCTTG 2733124 30 96.7 40 GGTAGCCTTG G............................. GATTTAACAATACCAAACAATTTACCAAACTGTTCTTGAG 2733194 30 96.7 35 TGTTCTTGAG G............................. CTTCAAGAAGCCAGAGAGCGAGCCTTGGCAGAATT 2733259 30 96.7 36 TGGCAGAATT G............................. TCTTTGATTACATACGTTTTGTCTGGCGCGACATCA 2733325 30 96.7 35 CGCGACATCA G............................. GGAGGGTGGTGCTCCCCTCAGGGAGCCTTCCACCT 2733390 30 100.0 36 CCTTCCACCT .............................. GCCGCAAGGGGCGAAAGTAAAACCTCTTACACCTGA 2733456 30 100.0 36 TTACACCTGA .............................. GTGATGGTGGATGTTTACCGAAAAAGAGATTGAGGA 2733522 30 100.0 38 AGATTGAGGA .............................. ATTAAGGGCGGAATAAACGGAACAATTGAATTATTTAA 2733590 30 100.0 38 AATTATTTAA .............................. TTGGCACTTTAAAAAAATAAACAGTAACATTGAATTAT 2733658 30 100.0 39 ATTGAATTAT .............................. GGCGATTACAAATACCGCCGGTATTGAAAGGAGGTATTG 2733727 30 100.0 38 GGAGGTATTG .............................. ATATTCAACAGGATAAAAGAAGAAATAGAATATTATTA 2733795 30 100.0 38 AATATTATTA .............................. TATTGTCGGGAAAGCAAATTGGACCGCAGGAACCGCGG 2733863 30 100.0 38 GGAACCGCGG .............................. GCTGCAGAAATATATCAAATCACAAAAGAGCCAATCGA 2733931 30 100.0 36 AGCCAATCGA .............................. AAAACTGAAATATGCAACAGCCAATGACAATACCTT 2733997 30 100.0 36 ACAATACCTT .............................. GCAACTTGCGTCCAGCAGATACCATAGAGTATATTT 2734063 30 100.0 38 GAGTATATTT .............................. TCCTTCTCCATCTTTGACAGTGTAATTTTCATTGTCAA 2734131 30 100.0 37 TCATTGTCAA .............................. ATTACTCTTAAATATATATTAACATATTTTTATTACA 2734198 30 100.0 37 TTTTATTACA .............................. ATGGCTATTTTGAGTGGTTTGACCCCTCTTCTTGGCT 2734265 30 100.0 36 CTTCTTGGCT .............................. TGAAAATCTAGGATATAGTATTGGTCAATGGTTCGG 2734331 30 100.0 36 AATGGTTCGG .............................. TATATGTTCCTTCTACGGCTAGGTACTATGAATTGG 2734397 30 100.0 39 TATGAATTGG .............................. GCGCATCGTTCTTGTATTCAGGCAGTGGTCTTGAATGAT 2734466 30 100.0 35 CTTGAATGAT .............................. TGGTACCCGTGTTTTTGTTGTCTATAATAAGACTT 2734531 30 100.0 40 AATAAGACTT .............................. CAACAATATATTTGGCAGCCGATGAACCAGAATAATTCTC 2734601 30 100.0 39 AATAATTCTC .............................. GGAACATGCTATACCTGAATTAGACGCATTCAGATACAG 2734670 30 100.0 35 TCAGATACAG .............................. GGAATACTTTGCCATTATAGCTTTGTTCTGTGCCA 2734735 30 100.0 36 TTCTGTGCCA .............................. GAGTTCTGATATTGGATTTGGAACACTTGATATAGT 2734801 30 100.0 37 TTGATATAGT .............................. CCAAAAGTTCGGCAGCTCTGATTCTCTCTTTTGCGGA 2734868 30 100.0 36 CTTTTGCGGA .............................. TTAGCGAAGCCTTTGGAGAATCGAATGTTGAATCTA 2734934 30 100.0 36 GTTGAATCTA .............................. TACTGCCAAAATCAGGGCTTGCATATTCTCCAAAGG 2735000 30 100.0 38 TCTCCAAAGG .............................. ATAAGAATGACAAACAAAACTAGTTCAGTTGTTGGCCT 2735068 30 100.0 38 TTGTTGGCCT .............................. TTGCCTGAATACAAGAACGATGCGCCGGAAGAACTAAA 2735136 30 100.0 36 AAGAACTAAA .............................. CAGATGAAAGTAGCATAGCTTCAGTTTTTTGCTTTG 2735202 30 100.0 38 TTTTGCTTTG .............................. AAAAGAAATTGCAGATAGGGATGCACAGCTTGAGGAAC 2735270 30 100.0 39 CTTGAGGAAC .............................. CAACTCAAAAAATGCGTCTATTTCCTTTTTCCAACAATC 2735339 30 100.0 37 TCCAACAATC .............................. TGACCTATAGAACTTGGTGATACATACAGTTCACCGT 2735406 30 100.0 36 AGTTCACCGT .............................. TGAACCTTTCACTTTATTTGGCTGTGTTACTTTTGT 2735472 30 100.0 39 TTACTTTTGT .............................. CAGGTTCAGGTTCCTAATAAGAGGGGCATAACAGCCCCT 2735541 30 100.0 36 AACAGCCCCT .............................. TTGAGATTCTCGCTCCAACGTTCTTCAAACCGTTTG 2735607 30 100.0 36 AAACCGTTTG .............................. AATATATTGCAGTCCATTGTCTTGTTGTTTATCTCT 2735673 30 100.0 36 GTTTATCTCT .............................. TAGAGAAGGATTATCATTATTTTCTTCTTTAGCAAC 2735739 30 100.0 39 CTTTAGCAAC .............................. CATACAGCCGTACAGGCGATTTGAGGTTCGTGCTCTTGC 2735808 30 100.0 40 GTGCTCTTGC .............................. GTGTAGACCATACTCGCGAAACTCTAGCGGGTCCATATTA 2735878 30 100.0 39 GTCCATATTA .............................. GCACCTTTTATCATATCCAAAATAATTTCCACTATCAAA 2735947 30 100.0 38 CACTATCAAA .............................. AAAAGCAAATTTCTCGTCTAAAGCTTCCTTTATATCAT 2736015 30 100.0 38 TTTATATCAT .............................. GTTTTCAATTGGTTGCGTAAGAAACCCCAAGCTATCCG 2736083 30 100.0 36 AAGCTATCCG .............................. TGAAAGCGAAGCCCTTCCTAAAGGCTATAAAACTAA 2736149 30 100.0 39 ATAAAACTAA .............................. GCATATGCCAGTTTATACAATCTGAATGTTTCTCTGGTA 2736218 30 100.0 36 TTCTCTGGTA .............................. AATCTGCGAACAAGTTAGCGGAAATCATCTAACAAG 2736284 30 100.0 38 ATCTAACAAG .............................. AGACAAGATTGATTTGCGAGAAGGTGGCTGCCGATGGC 2736352 30 100.0 39 TGCCGATGGC .............................. TCTTCCTTCCGATGTTTACGATTATTGGGTAATTATCAG 2736421 30 100.0 41 TAATTATCAG .............................. CGATTGGGAAGATTTTGAAAGTCCGTATGAAGAGATGAAAT 2736492 30 100.0 37 GAGATGAAAT .............................. TTCGGACTCCAAAAATCAACATTTTCGATTGTTAAGT 2736559 30 100.0 36 ATTGTTAAGT .............................. TGCATCTTCTGTTTGGAACAACTTAGGCTTTCCTGC 2736625 30 100.0 35 GCTTTCCTGC .............................. ACACCCTGCAATATATCCAATTACTTGGCGCATAG 2736690 30 100.0 40 TGGCGCATAG .............................. GTGATATATTTCACACAGCGAAAGTTTGGAGTGAAAGATC 2736760 30 100.0 36 GTGAAAGATC .............................. TGCAACAAGCATTGATACGTCAAAGTCAAAACAAGG 2736826 30 100.0 36 CAAAACAAGG .............................. TAACGATTCCGGAGAGTTGCATGGACTATCAACAAA 2736892 30 100.0 37 TATCAACAAA .............................. AAGAAAATGAACGGTGGTTTGACAGAGATGAAATGTA 2736959 30 100.0 38 ATGAAATGTA .............................. TATAGGTGGACTTGTCGGTTATGTAAGAGACGGTGGTA 2737027 30 100.0 36 GACGGTGGTA .............................. GACTGATGAAGAAAAAGCCTTGGAGGTTGCAAGGAT 2737093 30 100.0 39 TTGCAAGGAT .............................. AGCATTTATACCGTCTGAGGGTTACTTTGAAGGGTTCCT 2737162 30 100.0 36 AAGGGTTCCT .............................. AACCATGACACACAAAGTGAAATTCACGCACAGCGA 2737228 30 100.0 33 CGCACAGCGA .............................. ACGCCTGAAGAAGGAGCAGGCTGAAATCTACAA 2737291 30 100.0 36 AAATCTACAA .............................. TTTGTAATGCCAATAAGATTTTTCTTGTACCGAATG 2737357 30 100.0 36 GTACCGAATG .............................. TGATGAAGGACGCTGAAACAGGAATGTTCCAGGCTG 2737423 30 100.0 38 TTCCAGGCTG .............................. TTTGTCGCGAATGCTGATCGTGCAGAATAGGTTCCCGT 2737491 30 100.0 36 AGGTTCCCGT .............................. CCAGCATTCCGCCGACTATGGTGATCACTGGCAATA 2737557 30 100.0 37 ACTGGCAATA .............................. TGATTCTTCTGGGTGAAGACTACATCGTGATCGAACG 2737624 30 100.0 36 TGATCGAACG .............................. CATCTATCCATTGGGATATTACTTCATCAAGTGCAT 2737690 30 100.0 38 TCAAGTGCAT .............................. GGACGACAAGGTCCAACTCATAGAAGCGCGATTCGGTA 2737758 30 100.0 39 CGATTCGGTA .............................. AAAAAGAATATGCTATGCTTCCTGAATCAACGAAGCAAT 2737827 30 100.0 37 ACGAAGCAAT .............................. AAAATTTCCCACAATAGCTTTTTGTTAGCCTTATCTT 2737894 30 100.0 38 GCCTTATCTT .............................. CACACAAAAAACGGTTCCGTCATATTCATCTGTCTGTC 2737962 30 100.0 36 TCTGTCTGTC .............................. CCGACTTAAACAAATTACTGGAATAGCAGAATTATT 2738028 30 100.0 37 CAGAATTATT .............................. TCGGTGCTGATGGATTACCGACTATTCGACGTGGACG 2738095 30 100.0 40 GACGTGGACG .............................. CAAACCATTCTGCTACGGTCAATTTACTATTTGTTATTTG 2738165 30 100.0 38 TTGTTATTTG .............................. GTGGGTCTGGCTTATTATCAATTGGCAAGTTGTTTTCA 2738233 30 100.0 36 GTTGTTTTCA .............................. TTTACTTTTTCCTGTAGCTCCTTTGGAGACTTGGCG 2738299 30 100.0 37 AGACTTGGCG .............................. TTTTAGATAGTATATAGCTTTATTTGACAAAGGAACA 2738366 30 100.0 36 CAAAGGAACA .............................. CAATGGCCCGGAGCAGTTCGCATGCTTAGTTGACAA 2738432 30 100.0 37 TAGTTGACAA .............................. ATTACCTCCCCTGTTTTTTTACATCTGACTCACCTAT 2738499 30 100.0 37 ACTCACCTAT .............................. GCTAGAGAAGTAAAACCAAAGAAGCTAGGTCAAAATG 2738566 30 100.0 37 GGTCAAAATG .............................. GCTCTGATGGGTCTCCTCTATACCAAATTCTATTTCT 2738633 30 100.0 36 TTCTATTTCT .............................. GAATGGCAAAGCAAACTTAAAGAACTTCAAAAAGAA 2738699 30 100.0 37 TCAAAAAGAA .............................. CTTAAAATTCAAAAGTACAAATCTCTACGCAATCCAG 2738766 30 100.0 37 CGCAATCCAG .............................. GTGGATTCAATCGGTGAACAAATAGCATTGAAAAACA 2738833 30 100.0 38 TTGAAAAACA .............................. TCGATAGGGTGGGTTCACACCTTCTACTACTTCTTGCC 2738901 30 100.0 36 ACTTCTTGCC .............................. GGTTTTGGGCAGCAGTACCTTCTACAGACTCAAGTA 2738967 30 100.0 36 GACTCAAGTA .............................. ACGAAGCAGGTTTATACAGTTTGATATTGAAATCAA 2739033 30 100.0 39 TTGAAATCAA .............................. TTCCTAACTGTATCACTGGACGATTACACAAAGGTTTCA 2739102 30 100.0 39 AAAGGTTTCA .............................. TTCGTTTTCAAGCTTGTCCATCTGCGTAATAATTTTGGA 2739171 30 100.0 40 TAATTTTGGA .............................. GCTGTTCTATTTCTGTTCTTATAGCATCTGCGTGAGCCTT 2739241 30 100.0 37 CGTGAGCCTT .............................. TTTCGTACGACGGAAGAATTTCCAGCGAATTCAGAAA 2739308 30 100.0 38 AATTCAGAAA .............................. GAAGCAGCAAGAAGGGCTGGTTATAGCGAGAAAACAGC 2739376 30 100.0 39 AGAAAACAGC .............................. ACGTAAGATTCATAGCGGATTACCAGCTCAAATAGTAGA 2739445 30 100.0 35 AAATAGTAGA .............................. GGACGCTGGCCTGACTACACTTGTGATTTTTATGG 2739510 30 100.0 36 ATTTTTATGG .............................. AGCTAATTTCTACCGTTTCCGGTACAGGAATTATGC 2739576 30 100.0 37 GGAATTATGC .............................. GAAATTGTATATGATTATGTAGCAGAACATTGCAAAA 2739643 30 100.0 37 CATTGCAAAA .............................. GGTTTGGTGATATTTTAGCCAGTATTGAAAGTTTGGG 2739710 30 100.0 37 AAAGTTTGGG .............................. CTGGTTCTAGTGTTACATTCGTTACGAAGCAAGAGGT 2739777 30 100.0 37 AGCAAGAGGT .............................. AAGAAGGTCAAAAAATATGGGATGAGACAGCAGAAGA 2739844 30 100.0 39 CAGCAGAAGA .............................. CCATTAGATAGAGAATTGAAAAATTGCCTGCAAATGTAG 2739913 30 100.0 36 GCAAATGTAG .............................. TCTGAAGACAAAATCCGGAGGAGCAAACAACGATCC 2739979 30 100.0 37 ACAACGATCC .............................. CCTAAAGAGGTGGGAGTCTTCTTGCTATTTTCTTAGT 2740046 30 100.0 38 TTTTCTTAGT .............................. GCTAATGGGCGAAGGAGAGCGAAGAAAAGAATGGGGCA 2740114 30 100.0 36 GAATGGGGCA .............................. TTCGTACGACGGACAAATTTCCAGCGAATTCAGAAA 2740180 30 100.0 39 AATTCAGAAA .............................. TGGCGACGCTTACGAAAGAGCAAAAAGAGAAGCTGAGAT 2740249 30 100.0 35 AAGCTGAGAT .............................. TGTATTAGCATAACTCTCTATAAATGCTTCGTAAT 2740314 30 100.0 37 GCTTCGTAAT .............................. ATCGAAAGCAACTTCTTTTCTTGCTCAGCCAATATAT 2740381 30 100.0 39 GCCAATATAT .............................. AATAGCACGAAGAGGAACATAAGTTGTGCCGTTATAGTT 2740450 30 100.0 36 CGTTATAGTT .............................. CAAATATGCTGGGATTCCCAGTGCCAATGAACCGAA 2740516 30 100.0 38 ATGAACCGAA .............................. GAAGCAATAGACTTGTATGCAAAATATGGGATTGTGCA 2740584 30 100.0 37 GGATTGTGCA .............................. GCAAACGCAGGGATTCCGCCAAATACCAATGCCCCAA 2740651 30 100.0 36 AATGCCCCAA .............................. GGGTCCGGCTTATTATCAACCGGTAGATTGTTTTCG 2740717 30 100.0 38 ATTGTTTTCG .............................. CTTATCTTTCACAACTTCCTCCGGCCAAAAGGCTTCCT 2740785 30 100.0 35 AAGGCTTCCT .............................. GACAGCAGTAGAACTTGCAAAAACGAAGCTGCAAA 2740850 30 100.0 37 AAGCTGCAAA .............................. TCAACAGCAAATTCAAGCTTGCACGCTTCAAACTCTT 2740917 30 100.0 37 TCAAACTCTT .............................. TAGAGTGGTCTAACTTTTTTTCTTTCAGCGGCTTGAA 2740984 30 100.0 39 GCGGCTTGAA .............................. GGAAGACAAACTTGATGCTGCCAGCGCCAATGCATGATG 2741053 30 100.0 ATGCATGATG .............................. CCATAAAGCC ========== ====== ====== ====== ========== ============================== 126 30 37 ATTTCAATTCCTCATAGGTACGATAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [3631,167] Score: 0.18/0.18 # # Final direction: R [0.18,6.05 Confidence: HIGH] >NC_009009 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1279382 29 100.0 44 NNNNNNNNNN ............................. GGGCTTACCTGAATAATGTACAACTTATCGGTCGAACTACGGCG 1279455 29 100.0 43 NNNNNNNNNN .............TT......A....... TTTCTTACTATGTTACAAGTGATGAAGCTAGTTCATTTTGCAT 1279527 29 100.0 42 NNNNNNNNNN ........A.....T........A.C... TTTCTTACGGAGAAACCACATATTAAAACAATTAGCACAACA 1279598 29 100.0 44 NNNNNNNNNN ....T...A.............G..A... GTTCTTACTGAAAACTGGATTAAGAGAACTTATTGTGCGGTATG 1279671 29 100.0 43 NNNNNNNNNN ........A....AT.A.........A.. GTTCTTACGAAGGCTAACCGGATCTACGTTAAGAACGTTGAAA 1279743 29 100.0 41 NNNNNNNNNN ........A.....G.A..C...A..T.A GGAACTTAAAACTAATATATGGTTAACGGAATTACAAAAGC 1279813 29 100.0 45 NNNNNNNNNN ........A.....T.............. TTTCTTACCTTGGTTTGATGAACTATGACGGTCAAGTCATCATTA 1279887 29 100.0 45 NNNNNNNNNN ..............T........T..... TTTCTAACCGGCACAGTCACAATCAAAGCTCAAGACGGTAAACTA 1279961 29 100.0 46 NNNNNNNNNN ..............T........T..... TTTCTAACCTGTTGTCTTCTTCAAGATGTCACGGTCTGTTTCGATA 1280036 29 100.0 43 NNNNNNNNNN ..............T........T..... GTTCTTACACAACTACATTTAATGATTACTTTAAAGAGCACCC 1280108 29 100.0 44 NNNNNNNNNN ........A................A..A TTTCTTATTATTGTGGATCCAGAGAATGAATATACGAATATTGC 1280181 29 100.0 44 NNNNNNNNNN .......C......T.A....A..C.A.. GGTCTTACTGGTGTTCGTGACCTTACGACGTGTAGGAAGGCTCT 1280254 29 100.0 45 NNNNNNNNNN .......C......G........A..... ATTGTTACGTTATAAACAATATACAAAAGACATGATTGTAAATTT 1280328 29 100.0 44 NNNNNNNNNN ............................. GGTCTTACTCGCGCAAAATTGTTTCAATCATCTATCACACTTCC 1280401 29 100.0 43 NNNNNNNNNN ............................. TTTCTAACGCAGAGCCTTACCAAGTACGGACACTAGATTTGAG 1280473 29 100.0 44 NNNNNNNNNN ..............T......A..C.... GTTCTTACTAATATTGTTAATGAGGAGCAGTTCAATAAACTACT 1280546 29 100.0 41 NNNNNNNNNN .......................A..... TGTCTTACCCAACAATCCGCACCCATTATTTTCTTTTTTGA 1280616 29 100.0 43 NNNNNNNNNN .............TT......A....... GTTCTTACTTTTAAAAATATTTTTTTATAACTAAAGAGTTTAT 1280688 29 100.0 1 NNNNNNNNNN C.............T.............. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 19 29 43 GTTTCCGTCCCCTCCCGAGGTGACTGGGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.50,-5.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [23-18] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1788,351] Score: 0.18/0.18 # # Final direction: R [0.18,1.42 Confidence: HIGH] >NC_009012 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 716798 30 100.0 37 GTTCTATGGG .............................. TAAAACAAAGGAGAATTGTAAATGGAAGAGTATTTGA 716865 30 100.0 36 GAGTATTTGA .............................. TCGAGATTTTGGAACTTTGTTTCGCCATTCGTGTCT 716931 30 100.0 37 ATTCGTGTCT .............................. TCCGCAAAAGAGAGAATCAGAGCTGCCGAACTTTTGG 716998 30 100.0 35 GAACTTTTGG .............................. CGTTTCATGGATTTGATAAGTTCAAGCTCTATCTC 717063 30 100.0 36 GCTCTATCTC .............................. GATTCAGAATTGAACGAGTACGTCAAAAGCGTTTTA 717129 30 100.0 37 AAGCGTTTTA .............................. TAGATGAATCAAATAGTTCTACTGGACTTGGAGATAC 717196 30 100.0 36 TTGGAGATAC .............................. AAATAAATCTAAAGGGTATGCCACGGAAACGTTATA 717262 30 100.0 36 AAACGTTATA .............................. CCCAGTATGGAATGGCGGTGGAACTGTCCGGCTGGC 717328 30 100.0 37 TCCGGCTGGC .............................. GCTCTAACAGTAATTCAATTATTTTTGTATTCATTTG 717395 30 100.0 37 TATTCATTTG .............................. CGGGCCGCGCCTATTTGCGTGGGAACCCTTATAATGG 717462 30 100.0 36 CTTATAATGG .............................. CGGTACTGCTGTGGTTATCGACGAGATTCAGACTTG 717528 30 100.0 36 TTCAGACTTG .............................. ACGGAAGAGAAAAAACAGCAGATAATACAAAGCGTA 717594 30 100.0 37 ACAAAGCGTA .............................. TCATTTTTTTCACGACTATACAATATACCATTTGAAT 717661 30 100.0 35 CCATTTGAAT .............................. TGGCTGAAAGGTTATAGGTTGAAAGGAAAAGTCCC 717726 30 100.0 36 GAAAAGTCCC .............................. TCTCGCCTTTTGGCGGTTCGACTTTTGCCGCTTTCA 717792 30 100.0 38 GCCGCTTTCA .............................. GAATTGCCATTAAGTCTTTGGTTTCTTGTCTTGTCATG 717860 30 100.0 39 TCTTGTCATG .............................. TACAGCCTCCTTCATGCTTTCTCCTTTGTCAGCTAACTC 717929 30 100.0 36 CAGCTAACTC .............................. AAGGCTGGGGTGAGTGGGTTGAAGTAACTGAAGGTG 717995 30 100.0 35 ACTGAAGGTG .............................. TTATTTTTAGTACATCATTATTTGTGATTATTCTA 718060 30 100.0 38 GATTATTCTA .............................. TTTGCCCTCTCCTTTCTTTTCTTTTGTTTGTTTTAGCG 718128 30 100.0 36 TGTTTTAGCG .............................. TCTACCTGTTGAGCTTCTGCCACTTGTTCTAATGTA 718194 30 100.0 37 TTCTAATGTA .............................. TTGTTCAGCCTCCTTTCTAAGCAATGTAATAATAAAA 718261 30 100.0 38 AATAATAAAA .............................. CTTCATAATCTTTAGGGGTTCTTTTCTTCATATTGTCA 718329 30 100.0 38 CATATTGTCA .............................. CAACACTCCTTTATTATTATTATTTTTCCTGCCTTTGC 718397 30 100.0 36 CTGCCTTTGC .............................. TAGGCCAGCTCGAAAAAGCCGGCGCTAACACCGAAG 718463 30 100.0 37 AACACCGAAG .............................. ATGTGCCTCCGCCACGTCTTGTTATAATTGCTTCTCC 718530 30 100.0 36 TTGCTTCTCC .............................. CATTGTTGCCTAGTTGTTTTTTTGGTTTTACTTCTC 718596 30 100.0 38 TTTACTTCTC .............................. ATTGCCGGCGGCAAGTCTGAAGCGCCAAGAATTGACCG 718664 30 100.0 36 GAATTGACCG .............................. CCGACTGTTCGACGTAGACGTCGACAGGAGGAAAGA 718730 30 100.0 36 GGAGGAAAGA .............................. CCTCAATTTCATTGTATCACCGGAGCAGTGGAGCGT 718796 30 100.0 36 AGTGGAGCGT .............................. CAGAAAACTTGTGAACTACCGCCACTTATAGAAGTG 718862 30 100.0 37 TATAGAAGTG .............................. TTGTTCTGCAACTTATGTAAACATGTAGTCGAAATCA 718929 30 100.0 36 GTCGAAATCA .............................. TCTATCATGTAAACGGTAATGCATCCCATACACGCT 718995 30 100.0 36 CATACACGCT .............................. CCTCAATTTCATTGTATCACCGGAGCAGTGGAGCGT 719061 30 100.0 36 AGTGGAGCGT .............................. CCCCATTCAAGAATATTCACTGCTATTCACCTTCTT 719127 30 100.0 36 TCACCTTCTT .............................. ATAATTCACATAATGCAAATGTTGCACAACTTGTAT 719193 30 100.0 36 CAACTTGTAT .............................. CCGATAAGCTAAATGTCAACGCTGAGATGATGGTAA 719259 30 100.0 37 ATGATGGTAA .............................. AATCCCGCCCATTCGGCTGCCAAATCAATTCCGCCTA 719326 30 100.0 37 ATTCCGCCTA .............................. TATTGTGCCAAGTGTCAATACTTTTGGTACAATATTT 719393 30 100.0 36 TACAATATTT .............................. CAAATAGGTCTGTATACATTCTATTTTGATACAAGT 719459 30 100.0 36 TGATACAAGT .............................. TTGTGGCGACAGAACGGCGGGAATAGCAGTGTTGCA 719525 30 100.0 37 CAGTGTTGCA .............................. ATGTAACCAGCCCATGTCATTTCTGCCTTTTGCTCCA 719592 30 100.0 37 TTTTGCTCCA .............................. TGAGGATAAAATACAGCAGTACCTTGAACTAGATGAG 719659 30 100.0 37 ACTAGATGAG .............................. ATAAAACTATTTATTTTTTGTTCACAATTGTGTACAA 719726 30 100.0 36 TTGTGTACAA .............................. AAAAATGGCGAGCAGGCAGGGGGTTAGGACCCACCC 719792 30 96.7 38 GGACCCACCC .............................T CGATTTTGCAGACAGTCAAGAAGATGCAGAACGTAAAC 719860 30 96.7 38 GAACGTAAAC .............................T AGCAAATATTTGATTCAAAAATAGAGCTAGTAAAGAAT 719928 30 96.7 AGTAAAGAAT .............................T TTTTTCAAA ========== ====== ====== ====== ========== ============================== 48 30 36 GTTTGTATCGTACCTATGAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.00,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [742,650] Score: 0/0.18 # # Final direction: F [5.64,0 Confidence: HIGH] >NC_009033 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 1553944 25 96.0 41 ATTATATTAA -........................ CATTATGTCCCCCGTATCACTAGAGCTTGTAGACTCATACA 1554010 25 100.0 39 GACTCATACA ......................... ATTGGCATCCACAATGTTATTGTTTTTATGGGTTTCCTG 1554074 25 100.0 39 GGGTTTCCTG ......................... TTCAAGCCCTGATATACCTTCTCAGCAACATTTAATGTT 1554138 25 100.0 40 ATTTAATGTT ......................... AACTATTATATTGGATCCCGCCTTGTAAAAGTGTATGTAT 1554203 25 100.0 40 GTGTATGTAT ......................... TCTACAAATCTGAAAAAGACCTTATCGAGGTTGATACTGA 1554268 25 100.0 38 TTGATACTGA ......................... CTATACTATTACATTCGAGGGCTACCCCAATACTAAGC 1554331 25 100.0 45 AATACTAAGC ......................... ACTTTAATTTCTGTATAATTTGAAGCATCAACAGTTACTACTATG 1554401 25 100.0 TACTACTATG ......................... TTTGGTTCGAA ========== ====== ====== ====== ========== ========================= 8 25 40 CTTTCAATTCTTTCTATGTTGTTAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [37,255] Score: 0.18/0.18 # # Final direction: R [0,5.09 Confidence: HIGH] >NC_009033 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 1564219 25 96.0 38 CTATTCTGGG ...............A......... TTTTAAGTATTGGTGGTTTTTCTGAAGCTCTCTATTAT 1564282 25 100.0 39 TCTCTATTAT ......................... CAATAAATATATAAACTTTAAGTTAGCTAAATTTTTACA 1564346 25 100.0 39 AATTTTTACA ......................... ACTACCCATGAACACCCAACCATATTCTACCGAAACCTT 1564410 25 100.0 39 CCGAAACCTT ......................... GAAAGAGCTATTGAACAACAACATAGAACTAGCATTTAA 1564474 25 100.0 TAGCATTTAA ......................... TTTGGTTCGA ========== ====== ====== ====== ========== ========================= 5 25 38 CTTTCAATTCTTTCTGTGTTGTTAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [564,235] Score: 0.18/0.18 # # Final direction: R [0.18,5.18 Confidence: HIGH] >NC_009033 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 332546 25 100.0 40 AGAACTATCG ......................... CTATCACTTCTATTTTGATCTATGGGAGGAGAACCCGTTA 332611 25 100.0 40 GAACCCGTTA ......................... GAGAAAATACTGCGTGAACTCTCTAAGCATGATTGTCGAG 332676 25 100.0 39 GATTGTCGAG ......................... ATTGACTCCTAATTTGTTTCTGCAAAAACGTGATATGCT 332740 25 100.0 43 GTGATATGCT ......................... TTAGAGTTACCTAGGGAACAGGTTTACGACTTAGTAACTCAAT 332808 25 100.0 42 GTAACTCAAT ......................... ATACACCGATCGAAGTTATTGAAGAATACGAGAGGGAAATAT 332875 25 100.0 40 AGGGAAATAT ......................... AAATACACTTGTCCAATATGCGGTAAAGAGTTTAAGAGTG 332940 25 100.0 39 TTTAAGAGTG ......................... ATGGATTGTAATAAAATACAGAGCCGATTGGAGCTGGAA 333004 25 100.0 40 GGAGCTGGAA ......................... TAGGGGGCAAGATCAAGGTTAGCCTCAAGGCTATGGCTAC 333069 25 100.0 40 CTATGGCTAC ......................... TGTTGTGTTGTGGGTTGTTGTTGTGTTTTTTTGTGTGTCT 333134 25 100.0 43 TTGTGTGTCT ......................... TTAGAGTTACCTAGGGAACAGGTTTACGACTTAGTAACTCAAT 333202 25 100.0 40 GTAACTCAAT ......................... CATTTGAAGTATTTCGGCTAGACGTTTCCAGCCCATGTAT 333267 25 100.0 40 GCCCATGTAT ......................... TAATATAAATAAGAGTGAGGATAAGAAGCAAGAAAAAATA 333332 25 100.0 39 AGAAAAAATA ......................... ACCATCTGGTGAACGGGCCATTGGTGCTGTATGGTATAG 333396 25 100.0 38 TATGGTATAG ......................... CAAGCCATTCAAGCCATTGAACTATTTTTTTATGCATA 333459 25 100.0 TTTATGCATA ......................... TTTGGTTCGA ========== ====== ====== ====== ========== ========================= 15 25 40 CTTTCAATTCTTTCTATGTTGTTAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [248,230] Score: 0/0.18 # # Final direction: R [0,4.5 Confidence: HIGH] >NC_009033 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 330612 25 96.0 40 CTAGACGTAG ...............G......... CCAACTCTGCTACGTCCTAGCACTCTAACAGGTATCTTTG 330677 25 100.0 40 GGTATCTTTG ......................... TCTCGGAATAAATCTTAAATATAGAACTTGGGGAACGAAA 330742 25 100.0 43 GGGAACGAAA ......................... ATGGCTCTACTAATGCTATCAACATGGATAACGAAGAATATTA 330810 25 100.0 39 AAGAATATTA ......................... CCCGCCTCGAGTAACGGGGGGCAGACACGGGGCTTAGAG 330874 25 100.0 42 GGGCTTAGAG ......................... GTATATTTGTTCCCGATTTAAGACCGTTTATTATACAGTTAC 330941 25 100.0 40 ATACAGTTAC ......................... CAATGATTACCCAGAAAGAGATCGTTGAATATGTTAGGAA 331006 25 100.0 40 ATGTTAGGAA ......................... TTAAGACATGGGAAAACCCAAATTTTAAACTGTAAATGTT 331071 25 100.0 42 TGTAAATGTT ......................... TTGTCCGTGATATTTCTAATGGGTTTTCCATATAGTATTCTG 331138 25 100.0 TAGTATTCTG ......................... ATTAGTTCG ========== ====== ====== ====== ========== ========================= 9 25 40 CTTTCAATTCTTTCTATGTTGTTAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [65.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [571,176] Score: 0.18/0.18 # # Final direction: R [0.18,5.18 Confidence: HIGH] >NC_009033 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 336667 25 100.0 39 TCGAACCAAA ......................... CCTCATAAAAACAATGTCTTAAAAAACAATTATATTTAA 336731 25 100.0 40 TTATATTTAA ......................... CTCAGCAATCAGCTTATTATCTCTATAAACCCTGATATTG 336796 25 100.0 40 CCTGATATTG ......................... TTCTTTTCTTGAGGGCTTCTCTAAGGGTTTCGGCTACTAT 336861 25 100.0 42 CGGCTACTAT ......................... TAGGCGAGGACGACATGGTTAGGTGGAGAGCGAGAACCCGTT 336928 25 100.0 39 AGAACCCGTT ......................... TCCCCCGCCACACCACGCACACAAAACATGCATGCAAAA 336992 25 100.0 40 GCATGCAAAA ......................... TTGTAGAATAGCCTGGGCTACTGCCTCTACCTTCTCTTTA 337057 25 100.0 38 CTTCTCTTTA ......................... TTTATCCCCACAAACCTTAGCAGTATATCGTATAACTG 337120 25 100.0 39 CGTATAACTG ......................... CGGACTCGGTTTTGCCAGCGATATCGGGGTAGCGGATGT 337184 25 100.0 39 TAGCGGATGT ......................... GTCCATAAATTTGTGGAGCATACTCTACTAGCATTTCAT 337248 25 100.0 41 AGCATTTCAT ......................... AAGATTAATGGAATTGCAACGCTTATTAATGCTATTATTAG 337314 25 100.0 40 CTATTATTAG ......................... CTGCCGTATCAAGCTTCGGCACAATTTTTGTCCTAAATAT 337379 25 100.0 41 TCCTAAATAT ......................... TTAGAGACCTATGCGTCCTAATAGAGGTATTGCTCTCCTAG 337445 25 100.0 37 GCTCTCCTAG ......................... ATAGGAACCGCTCTGTGGCATGCGTTTATAGAAATTG 337507 25 100.0 41 ATAGAAATTG ......................... AGAGATACAGCGAGATAGATTATACGCCGACAATTGACCAA 337573 25 100.0 AATTGACCAA ......................... ATTATTTGGGG ========== ====== ====== ====== ========== ========================= 15 25 39 GTAGCAACATAGAAAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [75.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [167,17] Score: 0.18/0.18 # # Final direction: F [4.95,0 Confidence: HIGH] >NC_009033 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 350840 25 100.0 40 TCGAACCAAT ......................... CGCTGGAGACTGGGTCTATGTGATACTGTGGAGATCTCCC 350905 25 100.0 40 GAGATCTCCC ......................... AGCTAGGGGGGATATAGCACCAGATACTCCTATATCCTCA 350970 25 100.0 39 TATATCCTCA ......................... ATTATATATATTGTTTGGTATACATTTACTATTTTTAAT 351034 25 100.0 41 TATTTTTAAT ......................... TCGAACCATATAGACATTCTCCCATTCGCACTAACTGTAAA 351100 25 96.0 TAACTGTAAA .........C............... CATTGCAGTT ========== ====== ====== ====== ========== ========================= 5 25 40 GTAACAACATAGAAAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [75.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [260,215] Score: 0/0.18 # # Final direction: F [5.18,0 Confidence: HIGH] >NC_009033 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 394573 25 96.0 38 AGATCTTCAT ..C...................... GTGGATGCTAGAAAGATGATGGTGGAGAGGATAAAAAA 394636 25 100.0 39 GGATAAAAAA ......................... ACTACTAAATATTATGGTGTGAAAGATGGGGGTTCTCAG 394700 25 100.0 41 GGGTTCTCAG ......................... CCCGTAACAGTAACTGCAACTGCAACAGCACCCGTTATTAG 394766 25 100.0 41 CCGTTATTAG ......................... ATATTTATCTGGCATAAGCTATGTTGAACTGCGTGCATTAC 394832 25 100.0 40 CGTGCATTAC ......................... CTAAAATAATTGAAAGAGCCGAACATGTTGTCAGAACCAT 394897 25 100.0 TCAGAACCAT ......................... TTTGGTTCGA ========== ====== ====== ====== ========== ========================= 6 25 39 CTTTCAATTCTTTCTATGTTGTTAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [235,536] Score: 0.18/0.18 # # Final direction: R [0,5.09 Confidence: HIGH] >NC_009033 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 395456 25 100.0 38 TCGAACCAAA ......................... TCGACATCGATCCAGTATCTGTTCCCGACCCGATCGAT 395519 25 100.0 38 CCCGATCGAT ......................... CCCTTTGTCTAGGCATACCCTAAAGTTTGCATATTGAT 395582 25 100.0 38 GCATATTGAT ......................... CCCTTTGTCTAGGCATACCCTAAAGTTTGCATATTGAT 395645 25 100.0 40 GCATATTGAT ......................... CCTTTTTTCCTCGTATTGCCTGAATACTTCGTTAGGCAGT 395710 25 100.0 39 GTTAGGCAGT ......................... CCCTCAAGCGAGTCCAGTAGTTCTCCTATATAATTGCTA 395774 25 100.0 40 ATAATTGCTA ......................... TAAACATCCTGCTAAAGCAAATACGTATCTATTGGAGTAT 395839 25 100.0 40 ATTGGAGTAT ......................... CCATCTTTCGTTCTCACATATACCCAATCACCAGCTGGAT 395904 25 96.0 40 CCAGCTGGAT ...G..................... TGAACAACCCGCCTTTACTCCTTTTGCTCTTCCTTTTTCT 395969 25 96.0 TCCTTTTTCT ...G..................... TGGTCGTCAT ========== ====== ====== ====== ========== ========================= 9 25 39 GTAACAACATAGAAAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [76.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [535,167] Score: 0.18/0.18 # # Final direction: F [4.95,0 Confidence: HIGH] >NC_009033 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 564439 25 100.0 40 TCGAACCAAA ......................... GCAGAAATACAACAAACATGGTTTCACATATAGGGGATTG 564504 25 100.0 41 TAGGGGATTG ......................... TTTCTTTGCTAGTATAACAGCTTCGCTTAAATCACTCGGTG 564570 25 100.0 39 TCACTCGGTG ......................... TCATTCTTCCAAGCATAATATAATGCTGTCATGATAGTG 564634 25 100.0 38 CATGATAGTG ......................... ATAAGCATTGTTGCTTGCCGTAATTGTTACTGATACAG 564697 25 100.0 38 ACTGATACAG ......................... TCATATAATCGTCTTTTTTCTGCTTTATTCATGTTAAT 564760 25 100.0 40 TCATGTTAAT ......................... ATTGTTTCAAATGTTTCGCCTTGTTTCTCCAGTTTGCGGG 564825 25 100.0 40 AGTTTGCGGG ......................... ATACAAGACGACTATCCCAAAGAAAAATATAGATTGATTG 564890 25 100.0 40 AGATTGATTG ......................... TGAAAGTATCTGTTCAAATATTTCTTAACAATTTCAACTA 564955 25 100.0 39 ATTTCAACTA ......................... TTAGTCCGAGCCATTTCTCCAAGATGTCTGGAAGAACAG 565019 25 100.0 39 GGAAGAACAG ......................... TATTATCAATTCTTGGAACAGGCATAATATCACTAGCAT 565083 25 100.0 40 TCACTAGCAT ......................... ATTATTTATGCTCGGCATCAGGCTCAACAATAAAGTCTTA 565148 25 100.0 39 TAAAGTCTTA ......................... CCGCTTTGTCTTCAAAACTCTCGCCTGGTCTTTGCCACT 565212 25 100.0 40 CTTTGCCACT ......................... TTTACTAGTTTAACTGTTACTGTTTTACTGGCATCTGCAT 565277 25 100.0 GCATCTGCAT ......................... TATTGTAATA ========== ====== ====== ====== ========== ========================= 14 25 39 GTAACAACATAGAAAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [853,11] Score: 0.18/0.18 # # Final direction: F [4.68,0 Confidence: HIGH] >NC_009033 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 592270 25 100.0 44 NNNNNNNNNN .C....................... ATATTTCCTGATGGGAGGAGAGCCGAGGTAGAGCTTGATCCTAG 592339 25 100.0 40 NNNNNNNNNN ......................... TTAGCCCAACAAACAAGAATGAACTGGAATGGCTTACACT 592404 25 100.0 40 NNNNNNNNNN ......................... AGAAATAGCGTTTCTGCGTTTCGCATTCATAAAAGCTTGG 592469 25 100.0 41 NNNNNNNNNN ......................... TTATGTTGTTGAAAATAATATTGAATATAAGATAGATAAAA 592535 25 100.0 39 NNNNNNNNNN ......................... CGATTGATACAATTAATTAATATGAATAAGGCTGAGAAA 592599 25 100.0 39 NNNNNNNNNN ......................... GCAAATATACATTGCCCGAGAGAGAACAGGGAGTTAAAA 592663 25 100.0 39 NNNNNNNNNN ......................... TTATTTTATTTTTATAAAAAGACAGGCTAGGTGAGCAAG 592727 25 100.0 39 NNNNNNNNNN ......................... ATAGTGTGTGAATCTACTAGCTAAGGCGGTAGCTATGAG 592791 25 100.0 39 NNNNNNNNNN ......................... TAAAACCATTACACCTAAAAGCTGGATCGACATGGTTGA 592855 25 100.0 39 NNNNNNNNNN ......................... TTTGTTATGCGGGAATAGGGTCCTTTTTCATCTACTAAT 592919 25 100.0 40 NNNNNNNNNN ......................... TAACCGAGAGAATACCCCCATTCGTTGATTACTGTAATAG 592984 25 100.0 42 NNNNNNNNNN ......................... CTAACTCCCTCGAGGGGGTTGCGGGGGGTGGTGAAGATAAGA 593051 25 100.0 40 NNNNNNNNNN ......................... TAACCGAGAGAATACCCCCATTCGTTGATTACTGTAATAG 593116 25 100.0 42 NNNNNNNNNN ......................... CTAACTCCCTCGAGGGGGTTGCGGGGGGTGGTGAAGATAAGA 593183 25 100.0 40 NNNNNNNNNN ......................... TAACCGAGAGAATACCCCCATTCGTTGATTACTGTAATAG 593248 25 100.0 42 NNNNNNNNNN ......................... CTAACTCCCTCGAGGGGGTTGCGGGGGGTGGTGAAGATAAGA 593315 25 100.0 1 NNNNNNNNNN ......................... NNNNNNNNNN ========== ====== ====== ====== ========== ========================= 17 25 40 CTTTCAATTCTTTCTATGTTGTTAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [66.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [105,944] Score: 0.18/0.18 # # Final direction: R [0,5.36 Confidence: HIGH] >NC_009073 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 1185325 24 95.8 47 GTCGAATTCA -....................... CTTCGCCGTGGGTCTCGCGATTGGGTTCATTTTAGGTGGGGGCATAG 1185396 24 100.0 42 GGGGGCATAG ........................ GGGTAATTAGGATATGGGAGGCCGCGGGTATGAAAAGATATG 1185462 24 100.0 39 AAAAGATATG ........................ ATACTAACGTGTCCGCATATGAAACCTACGCATTAAGAG 1185525 24 100.0 46 GCATTAAGAG ........................ TCTATTTGTAAAGGGGCGAATTTACGCCGTTGTTAAACTATGTAAA 1185595 24 100.0 43 ACTATGTAAA ........................ CTCGCCCCGCCCGGGAGTGGGGGTACGACGGGGGCCGGGGTCG 1185662 24 100.0 46 GCCGGGGTCG ........................ ACCAGTTGACGAAGGTCTGGTCTCCGTGGTTGGACCAGTTCGAGAA 1185732 24 100.0 38 AGTTCGAGAA ........................ GCCAGCGCTCTCTCCAGAGCTGGCTTCCGCATTATCTG 1185794 24 100.0 GCATTATCTG ........................ TGGGCTTCCT ========== ====== ====== ====== ========== ======================== 8 24 43 CTTTCAATCCTCTTCTTGAGATTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.50%AT] # Reference repeat match suggestion: R [matched GAATCTCAAAAAGAGGATTGAAAG with 95% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [188,399] Score: 0.18/0.18 # # Final direction: R [0,5.86 Confidence: HIGH] >NC_009073 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 1188225 24 100.0 45 TGATTACGTC ........................ TTGCCAAGTACGGCTTCGACGTTGAGGATATAATACCGTCGGTGG 1188294 24 100.0 41 CCGTCGGTGG ........................ CTACCCTTCCTCTCGATGGTGCCCTGGAGAGAGATACTCAG 1188359 24 100.0 43 AGATACTCAG ........................ TCACTATAGGAAGCGGGGCTATACGGTAGATACATACTATGAG 1188426 24 100.0 44 ATACTATGAG ........................ TGGCCACGTGGTGCATGGTTATGATAACCACGCCGAGGCGTTAG 1188494 24 100.0 46 GAGGCGTTAG ........................ TGTAGGTAGCTGTTTCCCCTTAACCCCCTCCTTAAGCCTTTGGTAT 1188564 24 100.0 47 CCTTTGGTAT ........................ GGTGGGTGGAGGTGGAGGTGCTATGACTGGCGAGTACGAGAGACTAA 1188635 24 100.0 42 GAGAGACTAA ........................ TCGTGACAGTCAACGGCCCCTCCAGTGGGTGTGACAACGGCG 1188701 24 100.0 44 GACAACGGCG ........................ ATCTAGAGACTCGGTGGGGGTGTATATGTCCCACAGCTTCTTAA 1188769 24 100.0 45 AGCTTCTTAA ........................ CGCCAGGTCGGCGGCGGCCTTGTACACCCACCTCCTCACCTTCCG 1188838 24 100.0 41 TCACCTTCCG ........................ TGGGAGTCCACGCTTACGGATATCATTTTCACGTCGTTGTT 1188903 24 100.0 43 CGTCGTTGTT ........................ TGCTTTATGACAAGAAGACACGTGGATGCGACCACAGTAGGAA 1188970 24 100.0 48 ACAGTAGGAA ........................ CTATAGGGGCAAAGTGCGCCTACTGTGCACTGATGTGGGGTGCATTGT 1189042 24 100.0 44 GGTGCATTGT ........................ GAGCGCACGTAAAGCGCTAGAGGGGGCGCGCACGTTCTTGCTAA 1189110 24 100.0 41 TTCTTGCTAA ........................ CGTCCCCCGTCGTCGCCAGGACAACGTCGTTGTTGGAGAAG 1189175 24 100.0 43 GTTGGAGAAG ........................ CCACAAACAATGCCCGCGCGCCTAGGCGCGCGCGGGAAAGCGC 1189242 24 100.0 42 GGGAAAGCGC ........................ TGGTAAATGCACAGCGATTAATTCCATTTTTGCACCAGTAGA 1189308 24 100.0 39 CACCAGTAGA ........................ CCTCCACCTTCTCTGTCCTGGCGCTTAGGGGTCTCGTGG 1189371 24 100.0 42 GGTCTCGTGG ........................ CTCTCAAGTCCACGTGGCGGGGCGCCAGCTCCTCAATACGCC 1189437 24 100.0 41 TCAATACGCC ........................ CAAATCTACCGCCGTTATACTCAATCATAGCGGCATAGTAT 1189502 24 100.0 44 GGCATAGTAT ........................ TCCTAAAGCGACCCTCCTTGCAACACTTCGCCACTAGCCACAGC 1189570 24 100.0 42 TAGCCACAGC ........................ CCCCCCACCTACCGATACGTGGCGCGTGGCCCCGTGGTGCTG 1189636 24 100.0 44 CGTGGTGCTG ........................ TACCAGCTTGACGTAGGCGGTGCCAGGCACCACCTCGCCCTCGA 1189704 24 100.0 43 TCGCCCTCGA ........................ CTACACAGCCTCTATGTGCACTTGCCCCAGGCCTGGCTAAGTG 1189771 24 100.0 43 TGGCTAAGTG ........................ CGCGCCGTGCATGTGGGCCGCATGGGCGCGCAAAATATGTAGT 1189838 24 100.0 41 AATATGTAGT ........................ CCACGTCGAAACCCACGTGGGGGGCCAGAGCGTTGACTAGC 1189903 24 100.0 41 GTTGACTAGC ........................ GCGGGCGAGGGCCACAGACACGGTCTCGCTTATGGACGCGT 1189968 24 100.0 43 ATGGACGCGT ........................ GGCGCTTGTCTACCAAATCTCGATTGGCAAGAGACAAGTGCAA 1190035 24 100.0 41 ACAAGTGCAA ........................ CGAGGCCCACGGCGGCGAGTGCGACATCTATAGCCAGACCG 1190100 24 100.0 43 AGCCAGACCG ........................ ATTACTGTGGACATGGCTCCTCGAATATCCGCCTTAACTGTGA 1190167 24 100.0 49 TTAACTGTGA ........................ CAGCCACGGGTTAACCACCACTTGAAACAGTGTCACATATGCGTAAATG 1190240 24 100.0 44 TGCGTAAATG ........................ AGGTGCCTGTTTGCAGAAGGCTATGATGAACGCACTATAAACGA 1190308 24 100.0 44 CTATAAACGA ........................ GACAAAATAGTCAACGGCTTTCAACACGACATATAGCTGTATAC 1190376 24 100.0 42 AGCTGTATAC ........................ CGCTTATTGAAAAGCCAAGCGAGTACGCCCATATCGGCAGGC 1190442 24 100.0 42 ATCGGCAGGC ........................ GGTGAAGGTGGCCACAGTGCTTAAGGCCCTGTGCAAAAAGCT 1190508 24 100.0 GCAAAAAGCT ........................ TGGGCTTCCT ========== ====== ====== ====== ========== ======================== 35 24 43 CTTTCAATCCTCTTCTTGAGATTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.50%AT] # Reference repeat match suggestion: R [matched GAATCTCAAAAAGAGGATTGAAAG with 95% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [51.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [179,521] Score: 0.18/0.18 # # Final direction: R [0,5.45 Confidence: HIGH] >NC_009073 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 1203351 24 100.0 41 AAGAAACCCA ........................ GTTGTACGCCGCCGAGCGGGAGCGACGCGGTGGTTTGGTTT 1203416 24 100.0 46 GGTTTGGTTT ........................ TCCTCTTGGATCAACTACCACCGTTACCACTACGACTCAGGTGCGA 1203486 24 100.0 41 TCAGGTGCGA ........................ ACTGTCAGCGATCCAGCTCCACCACCCGCTCCGGAGGACAC 1203551 24 100.0 43 CGGAGGACAC ........................ CTCTATACGCCGTCGCCAGGATAAGCTCATTGCTTACAACAGT 1203618 24 100.0 43 TTACAACAGT ........................ TCCAAAACCTAGACGCCCTCCTCCAGTCACCGTCGGGACTTTG 1203685 24 100.0 45 CGGGACTTTG ........................ AATCACTCCGGACCCGCTATTAATCGTGGCGGGGTTCAACCGTCA 1203754 24 100.0 49 TCAACCGTCA ........................ ATATATTGAATCAATAAGGTCCGACGACACCCGTTCAAGCAGGGACCCG 1203827 24 100.0 45 CAGGGACCCG ........................ TGACCTCTGGGGTCTCCTCCTCTTTATCAACGTAGACCCTTTTGT 1203896 24 100.0 39 ACCCTTTTGT ........................ ACTCTATGCGGCCCACGAATTCCTCAGACTCAAGCGTAG 1203959 24 100.0 44 TCAAGCGTAG ........................ GCCCTCACCGTGTTGATATTGACGCTCGCATACATATTCATTGT 1204027 24 100.0 45 TATTCATTGT ........................ ACAGACCTCTTGAGGAGGTTCGAGGGGTCGCAGGTGTCCCTCGCC 1204096 24 100.0 45 GTCCCTCGCC ........................ ATTGGCGTTGGCGTCCCGGTGAAAATACTGCGCCACGATGGGAGG 1204165 24 100.0 42 CGATGGGAGG ........................ ATAGTACTTGCCAGAGCCTAACACGACTATAGTGTTCCATAT 1204231 24 100.0 39 TGTTCCATAT ........................ CATTTTTGCGGCGGCGAGCTCCTCGCCGAATAGCAAGCG 1204294 24 100.0 43 ATAGCAAGCG ........................ TCTGGCGCACCAATCTCGTACACGTCCCCCACCTCATCTACGA 1204361 24 100.0 45 TCATCTACGA ........................ TTGGGCGCCTTTACCACGGGGGCCGCATTTATGATTACTATAGAT 1204430 24 100.0 44 TACTATAGAT ........................ TTTCCAGTGTGAAAAAATATCGGTTACTACAGTGTGAATTATGC 1204498 24 100.0 39 TGAATTATGC ........................ CCGCACCCGCGATAGGCACTAACCACTTCATGATGCTAT 1204561 24 100.0 44 ATGATGCTAT ........................ TCCTCGCCACCTGCCTGACGACGAGGGCGCACTCCTCCGCAGCG 1204629 24 100.0 44 CTCCGCAGCG ........................ TAGCTTTGGTAGCGGCAGTGTGAAGTGCCCCTCTGGGCCATCAA 1204697 24 100.0 43 GGGCCATCAA ........................ ATTTCAAAGCCACGTTTGGGTAAAACTGTATAACTCTGTCCAA 1204764 24 100.0 40 CTCTGTCCAA ........................ CTCCTGGCGCAGATGTTATTGCATTTGGCAGAGATGTGCG 1204828 24 100.0 42 GAGATGTGCG ........................ TATTGCTCCCTCAGCTCCCTAGCCAGCCTCTGCGCCCTGTCA 1204894 24 100.0 45 CGCCCTGTCA ........................ AGTCCACCAGCACCGCGGTGGGCGCACGCGCGTGCGCAAGGGCCG 1204963 24 100.0 44 GCAAGGGCCG ........................ TCTTTTTTGGGGGGCGTTCCTGCGCCCCCTAAACCCCCTTTGCC 1205031 24 100.0 40 CCCCTTTGCC ........................ CCTACGTGGCCAATCTCGTGGCCGACCAGCTTCTCAGTCG 1205095 24 100.0 41 TTCTCAGTCG ........................ CAGGCTGGCACAGAGTGGGGACCTGCCCCTCGTCCTCCTAC 1205160 24 100.0 43 GTCCTCCTAC ........................ TTATTACCGTGCGCCTTATTTTGCCAATAGTGTCTTCCTCCTC 1205227 24 100.0 44 CTTCCTCCTC ........................ TACGTATTTGGGCCCACACGTCTTGTGTAATCGCACGAGACCAC 1205295 24 100.0 43 ACGAGACCAC ........................ CACTTTGGGCATGGGTCGCTGTGGTGCAACAGCTTTCCTCTAC 1205362 24 100.0 43 TTTCCTCTAC ........................ TCGCCCGCAACGCCAACAGGCGGGTCTGCAGGCATTCGGCCCT 1205429 24 100.0 40 ATTCGGCCCT ........................ TCGCGGAGAGGAATATCGTGTATAACTACGGAGAGACGCG 1205493 24 100.0 44 GAGAGACGCG ........................ ATGTAGCGCGCCAGTATTCCGATTATATAGCCAGCCACGTATTG 1205561 24 100.0 45 CCACGTATTG ........................ TGTATGAATCCCACTATCGCATCGCTAATAGACTTAAACTCAGCC 1205630 24 100.0 39 AAACTCAGCC ........................ CAGACCGTGAGGCCGCCCCCACCGGTTAAAGGTGTTATG 1205693 24 100.0 44 AGGTGTTATG ........................ CTTTATCTCGCTCTCCCCTTTTTGCTCTACTACGTTACCCATGG 1205761 24 95.8 47 TTACCCATGG ..............T......... CATGGGAGACGTAAACGCCGTTGTGTCCAACGTCTATGCAGTAAACG 1205832 24 100.0 GCAGTAAACG ........................ GTCTGTAGA ========== ====== ====== ====== ========== ======================== 38 24 43 GAATCTCAAGAAGAGGATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.50%AT] # Reference repeat match suggestion: F [matched GAATCTCAAAAAGAGGATTGAAAG with 95% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [454,145] Score: 0.18/0.18 # # Final direction: F [5.86,0 Confidence: HIGH] >NC_009033 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 597053 25 100.0 41 TCGAACCAAA ......................... ACCGCCCTAGGAGAGGGCTCGAGCCCTGATTTGCTCCACAA 597119 25 100.0 41 TGCTCCACAA ......................... GTATCAAGTATCCATTACTGCCTTTCACGACACGATAATCA 597185 25 100.0 38 ACGATAATCA ......................... TTCCTAAGAAACTCTATTCTTGGATCACTATCTTCTCC 597248 25 100.0 41 TATCTTCTCC ......................... TGTTATTCATAGCCATTATAATACTAATGGCTAGAAGGGGG 597314 25 100.0 42 TAGAAGGGGG ......................... TTAAGTAGAATTGTTGAACGGCTAACTGGATTTGACATGTTA 597381 25 100.0 40 TGACATGTTA ......................... TATGTAGTTTCTCGGCTATATGATCTATTATGGAGAGTGT 597446 25 100.0 40 TGGAGAGTGT ......................... AAAAACAAGTGCTCTAATGCCTTATCCCAATCCCTATACA 597511 25 100.0 39 TCCCTATACA ......................... CTTGCCATTCTATTGCCGAGGATATTGAATGATCCAGGA 597575 25 100.0 40 TGATCCAGGA ......................... TGTCCAATAATGAACGTAATTGTTTTCCCGATCTCGGTAT 597640 25 100.0 40 ATCTCGGTAT ......................... TAACTAATCCTAACGCAGATCCCATTTCTTTCATACTTGT 597705 25 100.0 43 TCATACTTGT ......................... CTTATTGGAGAAAATACTTAGTGAACTCTCCAAGCATGATTGT 597773 25 100.0 40 GCATGATTGT ......................... ATTATTGCAAATATTAACTGTGCAACATCGCGTAAAGTAG 597838 25 100.0 40 CGTAAAGTAG ......................... CCCCAACCTATACGCACCGGCTCAGTTGAAGTGGCTGGTG 597903 25 100.0 38 GTGGCTGGTG ......................... TGTATTCGTCTTGCACATGTATTGTTATGCTACCGCTC 597966 25 100.0 39 GCTACCGCTC ......................... CGCTTTTTCTAATGCAATTGTGAATTTTCTCTTATCTGG 598030 25 100.0 39 TCTTATCTGG ......................... TAAGCTTGAGGGGAAAACCGAGATAGTGTCAGAAACGAT 598094 25 100.0 CAGAAACGAT ......................... ATTATTGTTA ========== ====== ====== ====== ========== ========================= 17 25 40 GTAACAACATAGAAAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [1072,648] Score: 0/0.18 # # Final direction: F [4.5,0 Confidence: HIGH] >NC_009033 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 602804 25 96.0 39 GACAGGTCTG .....................T... ATCGCAGGGGCAGTTCTAGGAACCATTGTCCCCGGTATC 602868 25 100.0 42 CCCCGGTATC ......................... ATATGAGAATAAGAGCTTCGAGGACATAGATAGAGAAAGAAT 602935 25 100.0 39 GAGAAAGAAT ......................... CCCCAAGGAATCGTTAAGTGCTTTCTGGGCAAACACTAG 602999 25 100.0 CAAACACTAG ......................... ATTGGTTCGA ========== ====== ====== ====== ========== ========================= 4 25 40 CTTTCAATTCTTTCTGTGTTGCTAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [56.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [202,438] Score: 0.18/0.18 # # Final direction: R [0,5.36 Confidence: HIGH] >NC_009089 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1434756 29 100.0 37 TTATTTTGGG ............................. AAGCTTTCATAGCATCCTCTTCTGAACATTCATCACT 1434822 29 100.0 37 ATTCATCACT ............................. TAGTAAGTTAACTCATACATACCACCTTCCCCATAAA 1434888 29 100.0 38 TCCCCATAAA ............................. TATTATAAATCTTTAAATAGCCTTCTAAGCGTCTACTA 1434955 29 100.0 36 GCGTCTACTA ............................. ACATTATCAACATCATCTAATTTTTTTGTCACTGTA 1435020 29 100.0 37 TGTCACTGTA ............................. TAAGAATTAACTAATGTGAATTTTTTAGACATGTCAT 1435086 29 100.0 38 GACATGTCAT ............................. ACAAACAAGTGTAGGATAAACTTTCCTTGCCCAGTATA 1435153 29 100.0 37 GCCCAGTATA ............................. TAACAAAATTTGCGAGTACACTTATTTCTAATATATC 1435219 29 100.0 36 CTAATATATC ............................. ATAAGAGTGGTTTAAGAAAATAAGTTATTTTTCAAA 1435284 29 100.0 36 ATTTTTCAAA ............................. TGACTCGTGCTATTTTTTTTACACGCCTAAGAGGTA 1435349 29 100.0 36 CTAAGAGGTA ............................. CGAAAAATCTAGGAAAAACTATTGTAAAAGCGTTTA 1435414 29 100.0 37 AAAGCGTTTA ............................. TTTGATTACATGGGCAGTTTTTTATTATAGAGTGTTA 1435480 29 100.0 37 TAGAGTGTTA ............................. AAAAATCTTATTAAAGATTATTCAAAGTCTTTTGATT 1435546 29 100.0 36 TCTTTTGATT ............................. AACAAAAAAGATACATCTGTAACTAATTTTTATACT 1435611 29 96.6 TTTTTATACT ............T................ ACAGATATAA ========== ====== ====== ====== ========== ============================= 14 29 36 GTTTTATATTAACTAAGTGGTATGTAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.86%AT] # Reference repeat match suggestion: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [397,1185] Score: 0.18/0.18 # # Final direction: F [0.91,0.18 Confidence: HIGH] >NC_009053 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 235633 28 100.0 32 NNNNNNNNNN A..TGTG..................... GCAGTCAGTCATCAGCTTGGACTTTTACTAGA 235693 28 100.0 32 NNNNNNNNNN ............................ TTTTCCCCCACCAACCGAGTGTTTTCAACATT 235753 28 100.0 32 NNNNNNNNNN ............................ GGTATCAATAGAGTATTGAATCTTGTTCGGGC 235813 28 100.0 32 NNNNNNNNNN ............................ CTTTACACAAGGTATCTTCCGCTCCTTTAAAT 235873 28 100.0 32 NNNNNNNNNN ............................ AGCGTAATCAGGTTGAGTCTTTACAACAATTT 235933 28 100.0 32 NNNNNNNNNN ............................ GGAGCAGTTAGAAATTTATCGTCGGGGCGAAT 235993 28 100.0 33 NNNNNNNNNN ............................ ATTTGATAAAATCGCTTTTAATACGTGCTTGTT 236054 28 100.0 32 NNNNNNNNNN ............................ TTATTTCTTTAAGAATCATTTTATCAGCATAA 236114 28 100.0 32 NNNNNNNNNN ........T................... AAGCGGTTCGCTTACGTCATGGGATTTTACAC 236174 28 100.0 32 NNNNNNNNNN ............................ AAGAGTAGAATACGCCGCACTTGCGGCATAGA 236234 28 100.0 32 NNNNNNNNNN ............................ GAAAAAATAATGTCATACCCTCGAAACCCAAA 236294 28 100.0 32 NNNNNNNNNN ............................ AAAAATTCCACATTCCGTGTGAGCTTTCTGCT 236354 28 100.0 34 NNNNNNNNNN ............................ ATCGGAAGATTCAACATCAGACTATTTTAAATAT 236416 28 100.0 32 NNNNNNNNNN ..CTA.GC.................... CTTGATTTCTGCAATGTGGATTGCACCCGCTA 236476 28 100.0 32 NNNNNNNNNN ............................ GAAACCGGTGAAGTTAAAGATAAGCACAATTT 236536 28 100.0 32 NNNNNNNNNN ............................ CTGTAACTGTTGCTTGTTGGTAGGTTTTTTCA 236596 28 100.0 32 NNNNNNNNNN ............................ ATTTAATCGTTAAAGCACGCCAAGAACTACTT 236656 28 100.0 32 NNNNNNNNNN ............................ ATTTTGGCTTAGTTGTAGCTGGCTCACTTGGA 236716 28 100.0 32 NNNNNNNNNN ............................ TACCTTTGGCTTTTCCGCTTGCTTTTTCAGGA 236776 28 100.0 32 NNNNNNNNNN ............................ ACGAAAAACGAGCATTGATTACAGTTGTAACT 236836 28 100.0 32 NNNNNNNNNN ............................ ACTAAACAGCTTTTAAATTCAATTCGCTACAA 236896 28 100.0 32 NNNNNNNNNN ............................ CCATTGACTGGTAACTTTTATCAATTTCATCA 236956 28 100.0 32 NNNNNNNNNN ............................ TTTTGATAAATTTCTCGCCAATCACAAAATGA 237016 28 100.0 32 NNNNNNNNNN ............................ TTCAGGTTTTTATTGGTGAGGCTCGTTATCGC 237076 28 100.0 32 NNNNNNNNNN ............................ CGTTCTCAGCGCACTCAAATCACGCAAGACGA 237136 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 26 28 32 TTTCTAAGCTGCCTATACGGCAGTGAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [38,143] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_009053 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 235693 28 100.0 32 TTTTACTAGA ............................ TTTTCCCCCACCAACCGAGTGTTTTCAACATT 235753 28 100.0 32 TTTCAACATT ............................ GGTATCAATAGAGTATTGAATCTTGTTCGGGC 235813 28 100.0 32 TTGTTCGGGC ............................ CTTTACACAAGGTATCTTCCGCTCCTTTAAAT 235873 28 100.0 32 TCCTTTAAAT ............................ AGCGTAATCAGGTTGAGTCTTTACAACAATTT 235933 28 100.0 32 ACAACAATTT ............................ GGAGCAGTTAGAAATTTATCGTCGGGGCGAAT 235993 28 100.0 33 CGGGGCGAAT ............................ ATTTGATAAAATCGCTTTTAATACGTGCTTGTT 236054 28 100.0 32 CGTGCTTGTT ............................ TTATTTCTTTAAGAATCATTTTATCAGCATAA 236114 28 96.4 32 ATCAGCATAA ........T................... AAGCGGTTCGCTTACGTCATGGGATTTTACAC 236174 28 100.0 32 GATTTTACAC ............................ AAGAGTAGAATACGCCGCACTTGCGGCATAGA 236234 28 100.0 32 GCGGCATAGA ............................ GAAAAAATAATGTCATACCCTCGAAACCCAAA 236294 28 100.0 32 GAAACCCAAA ............................ AAAAATTCCACATTCCGTGTGAGCTTTCTGCT 236354 28 100.0 42 GCTTTCTGCT ............................ ATCGGAAGATTCAACATCAGACTATTTTAAATATTTCTAAGC 236424 28 71.4 32 ATTTCTAAGC --------.................... CTTGATTTCTGCAATGTGGATTGCACCCGCTA 236484 28 100.0 32 GCACCCGCTA ............................ GAAACCGGTGAAGTTAAAGATAAGCACAATTT 236544 28 100.0 32 AGCACAATTT ............................ CTGTAACTGTTGCTTGTTGGTAGGTTTTTTCA 236604 28 100.0 32 GGTTTTTTCA ............................ ATTTAATCGTTAAAGCACGCCAAGAACTACTT 236664 28 100.0 32 AGAACTACTT ............................ ATTTTGGCTTAGTTGTAGCTGGCTCACTTGGA 236724 28 100.0 32 CTCACTTGGA ............................ TACCTTTGGCTTTTCCGCTTGCTTTTTCAGGA 236784 28 100.0 32 TTTTTCAGGA ............................ ACGAAAAACGAGCATTGATTACAGTTGTAACT 236844 28 100.0 32 AGTTGTAACT ............................ ACTAAACAGCTTTTAAATTCAATTCGCTACAA 236904 28 100.0 32 TTCGCTACAA ............................ CCATTGACTGGTAACTTTTATCAATTTCATCA 236964 28 100.0 32 AATTTCATCA ............................ TTTTGATAAATTTCTCGCCAATCACAAAATGA 237024 28 100.0 32 CACAAAATGA ............................ TTCAGGTTTTTATTGGTGAGGCTCGTTATCGC 237084 28 100.0 32 TCGTTATCGC ............................ CGTTCTCAGCGCACTCAAATCACGCAAGACGA 237144 28 100.0 CGCAAGACGA ............................ TCGTTATTTT ========== ====== ====== ====== ========== ============================ 25 28 32 TTTCTAAGCTGCCTATACGGCAGTGAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [98,135] Score: 0/0.18 # # Final direction: R [0,1.05 Confidence: HIGH] >NC_009073 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 264904 24 100.0 45 GACGTGAGCG ........................ CAGCTTGACGTACCAGAACAGTACCTCAAAATCTCTTAGGTCCCG 264973 24 100.0 45 TTAGGTCCCG ........................ CACGAATTCGACGATTTTTTGTTCAATGTCCATGTCAAACTGAGA 265042 24 95.8 46 CAAACTGAGA ............T........... GCAACTTTCTTCTACCCCGGGTAAGCGAGATGTATATGTAAAGCCA 265112 24 91.7 TGTAAAGCCA ........A...T........... CTTGATCTTC ========== ====== ====== ====== ========== ======================== 4 24 45 GAGAATCCCCAAAGGGGGTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [10,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.90,-6.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [954,293] Score: 0.18/0.18 # # Final direction: F [1.33,0 Confidence: HIGH] >NC_009074 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 3872719 19 100.0 28 NNNNNNNNNN ................... TACTCCGATCCCATGCCGTGGTTGGCCA 3872766 19 100.0 27 NNNNNNNNNN ................... TTACTCTGGCCCCGCGGCGGTCGATCG 3872812 19 100.0 28 NNNNNNNNNN ................... CACTCCGATCCCATGCCGTGATCGGCCG 3872859 19 100.0 1 NNNNNNNNNN .....C......G...A.G NNNNNNNNNN ========== ====== ====== ====== ========== =================== 4 19 27 GAGTCAGCGCTTCAGCGCT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [20,160] Score: 0.18/0.18 # # Final direction: F [0.68,0.55 Confidence: LOW] >NC_009076 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 3948168 19 100.0 45 NNNNNNNNNN AGA..T..T....G..... GACGACGTCTACTTTGATGGTTGCCATATCGACTCCTGTCGATCG 3948232 19 100.0 28 NNNNNNNNNN ................... TACTCCGATCCCATGCCGTGGTTGGCCA 3948279 19 100.0 27 NNNNNNNNNN ................... TTACTCTGGCCCCGCGGCGGTCGATCG 3948325 19 100.0 28 NNNNNNNNNN ................... CACTCCGATCCCATGCCGTGATCGGCCG 3948372 19 100.0 1 NNNNNNNNNN .....C......G...A.G NNNNNNNNNN ========== ====== ====== ====== ========== =================== 5 19 32 GAGTCAGCGCTTCAGCGCT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [6-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [30.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [614,160] Score: 0.18/0.18 # # Final direction: R [0.18,1.05 Confidence: HIGH] >NC_009135 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 742879 37 100.0 35 CGTATTATGT ..................................... TTCTCCTTCCATCTTGAACAGTGTGAGGTAGCAGG 742951 37 100.0 37 AGGTAGCAGG ..................................... ATTAATCCCATAATACTTTTCTAGGTCTGGGCGGAAT 743025 37 100.0 34 TGGGCGGAAT ..................................... TAAAAAAAGAAAAAAGTTAAAAAAGCTAGAATAA 743096 37 100.0 37 GCTAGAATAA ..................................... AAAAAACAGATTGAAAAATTAACGGCAAAACAATGAA 743170 37 100.0 36 AAACAATGAA ..................................... AAAACGAAAGAAGACTCAACAAGCTAGAAAAACAAT 743243 37 100.0 34 GAAAAACAAT ..................................... CAATTGCTAAGAGTGCACTAATCGCACTAATAAA 743314 37 100.0 35 CACTAATAAA ..................................... ATTTTAAGTATGCGATGTACTCGGATTGATAAATT 743386 37 100.0 40 TTGATAAATT ..................................... ACGTAGATACGCTTGTTGCTTCAATGGAAAATTCAGAAGG 743463 37 100.0 36 ATTCAGAAGG ..................................... TTTGTGAATCCCATACAAGGGTTACAGCAGTTACAG 743536 37 100.0 37 GCAGTTACAG ..................................... ATTTATACGACTAGAAGACCGGCAAAAGTGTATACGG 743610 37 100.0 34 GTGTATACGG ..................................... AAAATAAAGCAACGGTTATAAGTCCGGTTGCGAT 743681 37 100.0 37 CGGTTGCGAT ..................................... AGCGTCTATATAAGCGGAACTATACGCACTTTCCGGT 743755 37 100.0 37 ACTTTCCGGT ..................................... CGAATGAAACGAGCGAAACAAGTAATAAAAAATCAAG 743829 37 100.0 36 AAAAATCAAG ..................................... CAGTAAAAACATTTTGATTTATTATTTTGATCCATT 743902 37 100.0 39 TTGATCCATT ..................................... CAGTAAAAAAAGTTAATGAAGAAATTACACCAAGTACTT 743978 37 100.0 38 CCAAGTACTT ..................................... TCGATATAAGCGGAACTATACGCACTTTCCGCTCTTAA 744053 37 100.0 38 CCGCTCTTAA ..................................... TTTTTTTATACGTTTAGTAACAGGGTTAATTCTGTTTA 744128 37 100.0 37 ATTCTGTTTA ..................................... TTTAATTCCCATTCATGGTTTGGATCTGGAATAAATG 744202 37 100.0 38 GGAATAAATG ..................................... TTTTGTTCGTGTCTTTTCTTCTCAATAATTCTTTTAAA 744277 37 100.0 37 TTCTTTTAAA ..................................... TTTTTTTATTGTAATCGGTTATACTGTTGTATTCTGT 744351 37 100.0 38 TGTATTCTGT ..................................... ACAATTTAGATGTTATAGAGTTTTTAAAACAGAATAAA 744426 37 100.0 36 ACAGAATAAA ..................................... TACAGAATTTACGTGATTTTAATTATGGTATATATT 744499 37 100.0 38 GGTATATATT ..................................... TATTGTCGATTTTATTTCGCTTAACTCTGTCGGATTAT 744574 37 100.0 36 GTCGGATTAT ..................................... TGATGGAGTCAAAAGGTAAGACTGTTAAATTTCCGG 744647 37 100.0 37 AAATTTCCGG ..................................... ACCTTGAAAATATAACATATGAGCAAAAAATTGAAAT 744721 37 100.0 38 AAATTGAAAT ..................................... CCACCGGCGGAGGGCTCTAAAACGAGGGTACTCGAATA 744796 37 100.0 37 TACTCGAATA ..................................... CTGATGAAACGAGCGAAACAAACAATAAAAAATCAAG 744870 37 100.0 AAAAATCAAG ..................................... CGGGGCAAAG ========== ====== ====== ====== ========== ===================================== 28 37 36 CTAAAAGAATAACTTGCAAAATAACAAGCATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.97%AT] # Reference repeat match suggestion: F [matched CTAAAAGAATAACTTGCAAAATAACAAGCATTGAAAC with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-2.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [73.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [354,272] Score: 0/0.18 # # Final direction: F [5.27,0.37 Confidence: HIGH] >NC_009089 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1645194 29 100.0 37 TTATTTTGGG ............................. TAAAACCACTCAATTCTTAAAAGATACTGCAATTATT 1645260 29 100.0 37 TGCAATTATT ............................. GGACATTTTAACCATAGACTATTTTACAAACAAACTT 1645326 29 100.0 37 AAACAAACTT ............................. GGAGATTTAAAAGTTAACAACATAAAAATGATAGATA 1645392 29 100.0 38 ATGATAGATA ............................. TGGTGAACAATAAAACAATCATCTAAAGACGAAGAAAA 1645459 29 100.0 39 ACGAAGAAAA ............................. ATAATCCAGAAGATGATACACTTCTTGAACAATATATTG 1645527 29 100.0 38 CAATATATTG ............................. CTATCAATATATATTTTATAAGCATAAGTTTTACGCAT 1645594 29 100.0 37 TTTTACGCAT ............................. AACAACGTCATATATATCATCTTTAGTTGTAAGAGCA 1645660 29 100.0 38 TGTAAGAGCA ............................. AGTTATGTCAAATTATTAGAAACTAAAAACCTAGTTGG 1645727 29 100.0 37 ACCTAGTTGG ............................. AATATCTAAAAAAAACGACTTATATCCCATTTCTACA 1645793 29 100.0 37 CATTTCTACA ............................. AATTTAGAAAAGGACTATTAGGAAGCAAAGAAAAAAT 1645859 29 100.0 36 AAGAAAAAAT ............................. AAAGTAAATCCTAGAGCATAACCAATTTTCGTAGGC 1645924 29 96.6 TTTCGTAGGC .......................A..... AGTATAAT ========== ====== ====== ====== ========== ============================= 12 29 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [61.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [281,393] Score: 0/0.18 # # Final direction: F [0.91,0.27 Confidence: MEDIUM] >NC_009089 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1935482 29 100.0 38 TTATTTTGGG ............................. CTAGAATTAGAACTCATTATTAAAACCATTCTTGCAAG 1935549 29 100.0 37 TTCTTGCAAG ............................. TAATCTGACACATACAAAGTTGAACCTAGTGGTACGG 1935615 29 100.0 37 AGTGGTACGG ............................. AAAAGCGTTCTTAAATCGTTACTTAACTCTTGCAAAT 1935681 29 100.0 36 TCTTGCAAAT ............................. TGGTATATCATACTCGTGCATTGCCTGCTCCACATT 1935746 29 100.0 37 GCTCCACATT ............................. ATACAACCATATATTTACCAATTATGTACTTATGAAG 1935812 29 100.0 36 ACTTATGAAG ............................. TTTTTTAACTTTTCAGTTCTCACAGGCGTTTCATCT 1935877 29 100.0 36 CGTTTCATCT ............................. TTCATATTCCAAGCGTTTTGCTTACACTTAATAGAA 1935942 29 100.0 38 CTTAATAGAA ............................. AAAATTAAATTTCATGCTCTTAGACATACATATGCAAC 1936009 29 100.0 36 CATATGCAAC ............................. TAGATTGCTTTCAAATTACCTCTTGTATAGCGTCTT 1936074 29 100.0 37 ATAGCGTCTT ............................. TTGCTCCGCTATGCCTTGCGCTCTCTAATATCGCTTA 1936140 29 100.0 35 ATATCGCTTA ............................. TGAACTTTAATCGGTTTTATACAACAATATAACGC 1936204 29 100.0 37 AATATAACGC ............................. TCACACATGAGCAATATCGAAACAGGCAAATCTACAG 1936270 29 100.0 36 AAATCTACAG ............................. TTCGTAAAATAACAATTATCTGGAATATGAGAAGTT 1936335 29 100.0 37 ATGAGAAGTT ............................. CACTCTTAAGTTGTGACCTATCTGATATATGATTAAA 1936401 29 100.0 37 TATGATTAAA ............................. TCAATATCTATATTAAGTTTATTTTTAAAAACATCTT 1936467 29 96.6 AAAACATCTT ...............C............. TTGCAACAAG ========== ====== ====== ====== ========== ============================= 16 29 36 GTTTTATATTAACTATGTGGTATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [197,518] Score: 0.18/0.18 # # Final direction: F [0.91,0.18 Confidence: HIGH] >NC_009089 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1125024 29 100.0 37 TTATTTTGGG ............................. GTAGAGTCTTTATATGGTAGAGGTGGAATATATAAGT 1125090 29 100.0 38 ATATATAAGT ............................. AACTCTTCAATATCTCCTAATCGTTCAATATAATTCTC 1125157 29 100.0 37 TATAATTCTC ............................. ACTGTATGCCATCTAAATGCATCATACAAACTTATTT 1125223 29 100.0 37 AAACTTATTT ............................. TATACTTCCTAATGCAATCAAATAAGTACCTAAAATC 1125289 29 100.0 ACCTAAAATC ............................. TTCGCAACTT ========== ====== ====== ====== ========== ============================= 5 29 37 GTTTTAGATTAACTATATGGAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [739,634] Score: 0/0.18 # # Final direction: NA [0,0 Confidence: NA] >NC_009089 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1756278 29 100.0 37 TTATTTTGGG ............................. TATCTATTATTGGTATATTAAATGATTCTAATAATTC 1756344 29 100.0 36 CTAATAATTC ............................. ATGTTCACATTGACAGCTCAAGATAAACATGGAATT 1756409 29 100.0 37 ACATGGAATT ............................. TTAAATCGTTTGATTGGAAGTATAAATTATAATGACC 1756475 29 100.0 37 TATAATGACC ............................. GCTGAAAGTTTAAAAGTTTTAACTATAAATTCAGTTG 1756541 29 100.0 36 AATTCAGTTG ............................. TCTTTTTCTAATGCTTTTTTTACATATGGAGCTAAC 1756606 29 100.0 36 TGGAGCTAAC ............................. CCATCAGCCTTATCCTGTGCAAATAATAGTGCCAAG 1756671 29 100.0 37 TAGTGCCAAG ............................. AGGAGATAACTTCTATTAAAGATAACTTTGATGTGGT 1756737 29 100.0 39 TTGATGTGGT ............................. CTCAAAGTTGGACTAGCTTCATCTTTTAATTTTACAAGT 1756805 29 100.0 TTTTACAAGT ............................. TTTTATAATT ========== ====== ====== ====== ========== ============================= 9 29 36 GTTTTATATTAACTATATGGAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:82.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [71.7-86.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [660,169] Score: 0.18/0.18 # # Final direction: R [0.18,0.27 Confidence: LOW] >NC_009089 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2662981 29 100.0 36 AATCACAGCA ............................. ATATAAAATGGGATTAGTAAAAAACACAACAGGAAC 2663046 29 100.0 36 CAACAGGAAC ............................. TTTCTTCGTCTTTAGATGATTGTTTTATTGTTCATC 2663111 29 100.0 36 ATTGTTCATC ............................. ATTTTTATCACCTGAGATAGTAATAGTCGCTTTGTC 2663176 29 100.0 37 TCGCTTTGTC ............................. ATAATGTATTGAAAAATCAAATAGGCGTGCAACTTTT 2663242 29 100.0 38 TGCAACTTTT ............................. GTATGCTTGTTTATTATATTTATTCAATAGTCATGAGA 2663309 29 100.0 36 AGTCATGAGA ............................. CCACGCATTTTAGTTCAAATTCGAAGTTTTTGGCTG 2663374 29 100.0 38 TTTTTGGCTG ............................. CTATCCTTTCATTCATTTAAAATTTATTCCTTTCAAAT 2663441 29 100.0 38 CCTTTCAAAT ............................. ACGACGTTGAGATTGCGGAGCTTCTCAACCTTGTACGC 2663508 29 100.0 37 CCTTGTACGC ............................. GTTCATCAGATGGATATGCAAATGGAGATATAAAGTT 2663574 29 100.0 38 ATATAAAGTT ............................. TTTATATCAGTCTTTTTAGTCGCTGTCTGAATCTCCTC 2663641 29 100.0 38 GAATCTCCTC ............................. ACTATCTAAAAGATGATAATAGCTACATTTTGTACGTT 2663708 29 100.0 36 TTTGTACGTT ............................. TTGTAGATTTTGTAAGTAATGGTTTTTCGGAAAAAG 2663773 29 100.0 37 TCGGAAAAAG ............................. AAAATAAGCTATGAAGCTAAAGGAGAAATGAAAGGAG 2663839 29 100.0 ATGAAAGGAG ............................. CCCAAAATAA ========== ====== ====== ====== ========== ============================= 14 29 37 ATTTACATTCCATATAGTTAATCTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [529,268] Score: 0/0.18 # # Final direction: NA [0,0 Confidence: NA] >NC_009089 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3397324 29 100.0 37 AAGTTGCGAA ............................. GATTTTAGGTACTTATTTGATTGCATTAGGAAGTATA 3397390 29 100.0 37 AGGAAGTATA ............................. AAATAAGTTTGTATGATGCATTTAGATGGCATACAGT 3397456 29 100.0 38 GGCATACAGT ............................. GAGAATTATATTGAACGATTAGGAGATATTGAAGAGTT 3397523 29 100.0 37 TTGAAGAGTT ............................. ACTTATATATTCCACCTCTACCATATAAAGACTCTAC 3397589 29 100.0 AAGACTCTAC ............................. CCCAAAATAA ========== ====== ====== ====== ========== ============================= 5 29 37 ATTTACATTCCATATAGTTAATCTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [71.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [634,739] Score: 0/0.18 # # Final direction: F [0.27,0 Confidence: MEDIUM] >NC_009089 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2907464 29 100.0 39 TTTGGATACA ............................. TTGTGTTTATTGTGATAGTGCCGAACAGGTGTTAATACG 2907532 29 100.0 38 TGTTAATACG ............................. TATACTTTAATACGTCAAATTAGACTTGACCTAAACAA 2907599 29 100.0 36 ACCTAAACAA ............................. TTTTTCTGATGTTCCTAAGTCTGCTACTTCTATAGC 2907664 29 100.0 37 CTTCTATAGC ............................. TTTTTGCTCTATATCGCGTTAGGCAAATACAAGGATA 2907730 29 100.0 37 TACAAGGATA ............................. AACAATAAAAGTCAATTAGAAATGTTTATGGAAAACA 2907796 29 100.0 36 ATGGAAAACA ............................. TATTCCCGAAACTGAAAGAAATCAATGGACACCTTT 2907861 29 100.0 GGACACCTTT ............................. CCCAAAATAA ========== ====== ====== ====== ========== ============================= 7 29 37 ATTTACATTCCATATAGTTAATATAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:82.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [466,287] Score: 0/0.18 # # Final direction: NA [0,0 Confidence: NA] >NC_009089 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3455612 29 100.0 37 NNNNNNNNNN .C...TC............G......... CTGACACTGTGTCTTGTGTGAGTCTTTTCTTTATCCT 3455678 29 100.0 36 NNNNNNNNNN ............................. CGGTCGTAACGTGTCAATCCTATTGGGTTTTAGATA 3455743 29 100.0 36 NNNNNNNNNN ............................. AAGAAAGAGCTATTGAAGCATTAAACAGAATACAGG 3455808 29 100.0 37 NNNNNNNNNN ............................. CGTCTACTGTTGCATCATTTAGTGACCTAGCACTTTG 3455874 29 100.0 37 NNNNNNNNNN ............................. ATTTATATAAGTATGCAGGTGAGGGGATTTTTTGATA 3455940 29 100.0 37 NNNNNNNNNN ............................. TATTAAAAAATTACTACCTTTAAGTTGACCTTTTAAA 3456006 29 100.0 36 NNNNNNNNNN ............................. AAATATTAGATAGAATAGGGATAAATGAAGAATATG 3456071 29 100.0 37 NNNNNNNNNN ............................. CAGAGATAGAAATTATTTTTATTATACGTTTTTTTGT 3456137 29 100.0 37 NNNNNNNNNN ............................. TAATTTGTTCTATTTTTTTATCTAGTAACTTAATTGG 3456203 29 100.0 36 NNNNNNNNNN ............................. AACTACATATAAATAAATTCAAAGCCATGAAATTCG 3456268 29 100.0 38 NNNNNNNNNN ............................. ACGGATACTTTCTTTTCTTGCATCAGCATTTTGTTTCA 3456335 29 100.0 36 NNNNNNNNNN ............................. TATAATATAATGTTTAGTATAACTAAATAATTTTGA 3456400 29 100.0 37 NNNNNNNNNN ............................. CTTATGGTACTCTTACAAGAGTAGAAGGTGTATACCT 3456466 29 100.0 37 NNNNNNNNNN ............................. AGAATAAGATAACAACAATAGAATATAAAAATATCGT 3456532 29 100.0 37 NNNNNNNNNN ............................. TATTAAAATCTGTGAAAAATGCTTGGATGCCAACTCG 3456598 29 100.0 37 NNNNNNNNNN ............................. GTTATTCAGATGCATATAAAAACGCAGGTCAAACCTT 3456664 29 100.0 37 NNNNNNNNNN ............................. AAATTGAAGTAATAAAGAAAATAAGCTATGAAGCTAA 3456730 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 18 29 36 ATTTACATACCACTTAGTTAATATAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [80.0-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [191,185] Score: 0/0.18 # # Final direction: R [0,0.41 Confidence: MEDIUM] >NC_009089 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 3780590 20 100.0 70 NNNNNNNNNN ..AT..GC...TG....... TGTCGCCCCTGTTGCTCCTGTCGCTCCATTTGCTCCGGTTGGGCCTGTTGGTCCTATCGCTCCTGCTACT 3780680 20 100.0 70 NNNNNNNNNN ..AT..GC...CG....... TACTGCTCCTGTTGGGCCTGTTGCTCCATTTGCCCCTGTTGCTCCTGTCGCTCCTGTTGCTCCTGCTACT 3780770 20 100.0 43 NNNNNNNNNN ..AT..TC...CG...GA.. TGTTGGACCTATTGGACCTGCTACTCCATTCGCTCCCGTTGCT 3780833 20 100.0 52 NNNNNNNNNN ...AC.GC...CG...GG.. TGTTGCTCCATTTGCCCCTGTTGCTCCTGTCGCTCCTGTTGGACCTACTGCT 3780905 20 100.0 34 NNNNNNNNNN ..ATC.GC...CG...GG.. TGTTGCTCCTACTGCTCCCGTTGGACCTATTGCC 3780959 20 100.0 25 NNNNNNNNNN ..A.C..C...TG....... TGTCGCTCCTGTTGGACCTACCAAA 3781004 20 100.0 25 NNNNNNNNNN ..AT..GC...GG....... GGTTGGGCCTGTTGGGCCTACCAAA 3781049 20 100.0 34 NNNNNNNNNN ..AT..GC...GG....... GGTTGGGCCTGTTGGGCCTGTTGGACCTACCAAA 3781103 20 100.0 25 NNNNNNNNNN ..ATC.GGA..TG....... TACTGCTCCTGTTGGACCTACCTCT 3781148 20 100.0 25 NNNNNNNNNN ..ATC.GC...TG....... TGTTGCTCCTATTGGGCCTGTTGCC 3781193 20 100.0 70 NNNNNNNNNN ..A...G....TG....... AGTCGCTCCTATACTTCCTGTTGGACCTGTTGCTCCTGTATTTCCTGTTGGGCCTGTAGCACCTGTTACT 3781283 20 100.0 34 NNNNNNNNNN ..AT..GC...GG....... TGTATTTCCTGTTGGTCCTGTTATTCCATTTGCT 3781337 20 100.0 52 NNNNNNNNNN ..G...GC...TG....... TGTTAGTCCGGTTGGACCTGTTGCTCCTGTTGCTCCTGTATTCCCTGTTGGA 3781409 20 100.0 34 NNNNNNNNNN .................... AGTCGCTCCTGTATTTCCTGTTGGTCCTGTAGAA 3781463 20 100.0 25 NNNNNNNNNN .................... GGTTGCTCCTTTGTTTCCTGTTGGT 3781508 20 100.0 25 NNNNNNNNNN .................... GGTTGCTCCTGTATTCCCTGTCGGA 3781553 20 100.0 34 NNNNNNNNNN ..............C..... AGTCGCTCCTGTATTTCCTGTTGGTCCTGTAGAA 3781607 20 100.0 25 NNNNNNNNNN ......G.........G... AGTCGCTCCCATATTTCCTGTTGGA 3781652 20 100.0 25 NNNNNNNNNN ..C...........C..... AGTTGCTCCTGTATTTCCTGTTGGT 3781697 20 100.0 34 NNNNNNNNNN .................... GGTCGCTCCAGTTGCACCTCTAGGCCCCGTCGGT 3781751 20 100.0 1 NNNNNNNNNN ......GGA...G.A..A.. NNNNNNNNNN ========== ====== ====== ====== ========== ==================== 21 20 38 CCTGTTATTCCATTTGCTCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [42-11] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [794,436] Score: 0/0.18 # # Final direction: R [0,0.68 Confidence: HIGH] >NC_009328 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 317100 30 100.0 35 TACTTTTTGG .............................. TCAGCTATCTTGCATATTCGTTGAACAGAACAAAA 317165 30 100.0 40 CAGAACAAAA .............................. TGGATTTCGAGGAATTGCGAAACCACTTGATGGAGCTAGG 317235 30 100.0 35 TGGAGCTAGG .............................. AATGCGGGACATGTCACGACACCGGAATACTAGAA 317300 30 100.0 36 AATACTAGAA .............................. CATTTGTCGCCGCTTGATTTGCGTTTTGCGCTGCGG 317366 30 100.0 37 TGCGCTGCGG .............................. AGTCGGTTTTATGTACATTGTCGCCACTCCTAACATG 317433 30 96.7 36 TCCTAACATG ....................A......... CCCCACCTCGCTCCTCGCTACAAATAACGCTCCCGG 317499 30 100.0 35 ACGCTCCCGG .............................. TACCAAACAAACCATGCTTTTTTCTCTTCATTGTC 317564 30 100.0 37 CTTCATTGTC .............................. AAAATTTATTAACTGGAAGAACGAAGCGGTTAGCAGA 317631 30 100.0 34 GGTTAGCAGA .............................. TCGTCACCCACTCCTTGACGTTTTAGGTAGGCAG 317695 30 100.0 35 AGGTAGGCAG .............................. TTACGACGAGTACACATATGACCCGAACGCCGGGG 317760 30 93.3 37 AACGCCGGGG .....................A..G..... CCCTCACCGAGTCCGCGCATTTTTTCTCCTAAACCCC 317827 30 93.3 CCTAAACCCC .....................A..G..... TTTATCGATT ========== ====== ====== ====== ========== ============================== 12 30 36 GTTTGTATCGTACCTATGAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.80,-0.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [183,150] Score: 0/0.18 # # Final direction: F [5.78,0 Confidence: HIGH] >NC_009142 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 2779891 23 95.7 49 GCCGTCCCTA ....A.................. CGCCTGGTCGAGCGTGACGGGGAGCGGATCGCCCAGCTCGCCGTCCCTA 2779963 23 100.0 51 GCCGTCCCTA ....................... GACGCCGCCGTACGCGCGACACGGGCTGTGCTGCACCGCTCGCCGTCCCCG 2780037 23 100.0 GCCGTCCCCG ....................... TCGGGCCAGGCAAACATCGCCAACTCGCTACTGTCTCGCCGTCCCCG ========== ====== ====== ====== ========== ======================= 3 23 50 CCGGGACGGCCCTTCATTGAGGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [38.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [76,136] Score: 0/0.18 # # Final direction: R [0.27,0.78 Confidence: MEDIUM] >NC_009142 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 5687530 36 100.0 37 NNNNNNNNNN .................................... CTCCAGCATCGCCGGGTCCTTGAACAGCGCCTCGATC 5687603 36 100.0 37 NNNNNNNNNN .................................... CTCCAGCATCGCCGGGTCCTTGAACAGCGCCTCGATC 5687676 36 100.0 37 NNNNNNNNNN .................................... CAGGCGTTCGGCGGAGAGCAGGCCCGGGAGTTCGGGC 5687749 36 100.0 37 NNNNNNNNNN .................................... ATTCGGCCTGGGGATGGATCTCAGCCTGCTCGCGTAC 5687822 36 100.0 38 NNNNNNNNNN .................................... GCCGCATACGCAGGTCCAGTTGCCGTCGGCATCGACGG 5687896 36 100.0 36 NNNNNNNNNN ..C................................. AGGAACCACGCGATCAGCGCGCCGGGCAGACCGTTC 5687968 36 100.0 41 NNNNNNNNNN .................................... CGGCGCCGGTGGGTGCGGAGACGGACGTTGGTGTGCAACGC 5688045 36 100.0 35 NNNNNNNNNN .................................... GGCACGTCGCTCGCCTGCGATGTGCGCAGCTTCCT 5688116 36 100.0 36 NNNNNNNNNN .................................... AGTACGCAGGAGTCCAGCCGTGAAGATCCAGACCCG 5688188 36 100.0 37 NNNNNNNNNN .................................... ATTCGGCCTGGGGATGGATCTCAGCCTGCTCGCGTAC 5688261 36 100.0 38 NNNNNNNNNN .................................... GCCGCATACGCAGGTCCAGTTGCCGTCGGCATCGACGG 5688335 36 100.0 36 NNNNNNNNNN ..C................................. AGGAACCACGCGATCAGCGCGCCGGGCAGACCGTTC 5688407 36 100.0 41 NNNNNNNNNN .................................... CGGCGCCGGTGGGTGCGGAGACGGACGTTGGTGTGCAACGC 5688484 36 100.0 35 NNNNNNNNNN .................................... GGCACGTCGCTCGCCTGCGATGTGCGCAGCTTCCT 5688555 36 100.0 36 NNNNNNNNNN .................................... AGTACGCAGGAGTCCAGCCGTGAAGATCCAGACCCG 5688627 36 100.0 37 NNNNNNNNNN .................................... ATCGGGTGTGCGTGCTTGCTGATTGGTGCCGGTACGA 5688700 36 100.0 36 NNNNNNNNNN ..................C................. CCTACTACAACACCGGCAACGTCAGCTCGTTCTCGA 5688772 36 100.0 41 NNNNNNNNNN .................................... GTCGCGGGCGAAGTCGTGGCTCCGGTGAATCTCCATCTCAG 5688849 36 100.0 41 NNNNNNNNNN ...................C................ CCACATCGAGAGATCCCCTACTACAGCGTGTAGCCCGGCAG 5688926 36 100.0 1 NNNNNNNNNN ......T..................T.AC.GCG.CT NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 20 36 37 CCGTCACCGACGCGCAGCGTCGGTCCTCATTGCGGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-13.10,-13.20] Score: 0/0.37 # Array degeneracy analysis suggestion: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [43.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2671,362] Score: 0.18/0.18 # # Final direction: F [0.86,0.37 Confidence: MEDIUM] >NC_009142 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================================== ====== 5694051 38 100.0 32 AACAGGGAGC ...................................... TCGTCGGTCATGGATTTGCGCGCTTCTTCGCG 5694121 38 97.4 33 CTTCTTCGCG .....................................T CGTAGTTGACCGACGCGTCGGTCATGGTGCGGT 5694192 38 97.4 33 ATGGTGCGGT A..................................... CCTCGGCTGGTGGACTATCAGCGGCGTCGCCCT 5694263 38 100.0 GCGTCGCCCT ...................................... GATGCCCTTC ========== ====== ====== ====== ========== ====================================== 4 38 32 CCTGTCACCGGCGCCAAGCGTCGGTCCTCATTGCGGCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-12.50,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [293,983] Score: 0.18/0.18 # # Final direction: F [0.64,0.55 Confidence: LOW] >NC_009142 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 5694052 36 100.0 34 NNNNNNNNNN .................................... CTCGTCGGTCATGGATTTGCGCGCTTCTTCGCGC 5694122 36 100.0 35 NNNNNNNNNN .................................... TCGTAGTTGACCGACGCGTCGGTCATGGTGCGGTA 5694193 36 100.0 35 NNNNNNNNNN .................................... CCCTCGGCTGGTGGACTATCAGCGGCGTCGCCCTC 5694264 36 100.0 37 NNNNNNNNNN .................................... CGATGCCCTTCGTGCTGGCCTTGCCCAGCGCGTTCAG 5694337 36 100.0 51 NNNNNNNNNN .................................... ACGGAGTAGAACGGCACCCCGGGCACCCCGGGGTTGAAGTAGTACTCCGCC 5694424 36 100.0 39 NNNNNNNNNN .................................... ACCAAGCCAAGCTTGTCGCCGAGCACACCACGCACGAAG 5694499 36 100.0 59 NNNNNNNNNN .................................... TCCTGGGCCTGCTTGGTGAACCACAACGGCCTGCTCGGTGAACCACAACGGCAGCACAG 5694594 36 100.0 43 NNNNNNNNNN .................................... CAAGAACGCCTCGGAGATGATCCGCGAGTGCGGCTTGATCCGG 5694673 36 100.0 38 NNNNNNNNNN .................................... CTGCCACCAGTAGCGCAGCAGGGGGAACGCCAGCTCCA 5694747 36 100.0 37 NNNNNNNNNN .................................... TTTCCGAGGCGAAGGTTTCTGGTGTTCGCCATGTCGC 5694820 36 100.0 40 NNNNNNNNNN .................................... AACTCGGTGTCATAGAAGTACTTCATCGTTTGAGTTCTTG 5694896 36 100.0 37 NNNNNNNNNN .................................... TGTCCTGCGCCTCGTCCAACAGGATCACGTCGTACGG 5694969 36 100.0 42 NNNNNNNNNN .................................... CACGTGCCAGTGCGGGTCACCGATCGGCGCGTCGCCGACCGG 5695047 36 100.0 35 NNNNNNNNNN .........................G.......... CTCGGAAGGTTGGCCATGCGTGGTCCGGGCAGGGA 5695118 36 100.0 42 NNNNNNNNNN .................................... ACGTCCACGCCGAGGTAGTCGGTGCCGAGGCGATCGTCGGTG 5695196 36 100.0 1 NNNNNNNNNN ..................TGTCAA.GG.GGCCGAAT NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 16 36 40 CTGTCACCGGCGCCAAGCGTCGGTCCTCATTGCGGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-12.50,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [294,52] Score: 0.18/0.18 # # Final direction: F [0.96,0.37 Confidence: MEDIUM] >NC_009376 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 1012951 24 100.0 42 NNNNNNNNNN ........................ AGTGGCGATTATAACTCTGCGCAACCCAGGCCACTATACATA 1013017 24 100.0 49 NNNNNNNNNN ........................ CAGTACTGCAATGCGGCTATAGGACGATAATACTCGACGAGGCCCATTG 1013090 24 100.0 43 NNNNNNNNNN ........................ TAAGTTGTGGCTGACGACTGGGGCCAGGGAGTATGAGCGTCCA 1013157 24 100.0 43 NNNNNNNNNN ........................ GCCGGGGACAAAAGCATACGTACGCCGAGAGTTACAAAAGCGT 1013224 24 100.0 46 NNNNNNNNNN ........................ TATGTTGCCTGCCACGTGGCAAGAATTCCTCGGGGGAGACTGACAA 1013294 24 100.0 39 NNNNNNNNNN ........................ AGTCTTTAAACATCCAGGGCAGGCGCGCAATTGATATAC 1013357 24 100.0 42 NNNNNNNNNN ........................ CTTCCTCACGTCGTCTGTGTTCAGAATACGTTTGAGTATTTC 1013423 24 100.0 40 NNNNNNNNNN ........................ GTTGTGCTCGGGGACGCTTTCAAGCCGCGCGTCTAATACA 1013487 24 100.0 39 NNNNNNNNNN ........................ GGAAGATCTTAAGCGCATCCGTCGTTGCGCCGGGACTTC 1013550 24 100.0 42 NNNNNNNNNN ........................ ATCCGGCGTGGGGAAGACGACGCTTGCGCTGAACTTAGTGTC 1013616 24 100.0 49 NNNNNNNNNN ........................ CTGTTGGGTTGCTCAGACAGAGCTATTCCAGCCGCCCTTAGGGCGGCTA 1013689 24 100.0 42 NNNNNNNNNN ........................ GCAACCTCCTTTGCGCCCATGCCACTAAGTCGCTTATGTTGA 1013755 24 100.0 44 NNNNNNNNNN ........................ CTGCGTCTTAGATCCCGCCACGGGCCTGCCTCTCTCGTCTAGCT 1013823 24 100.0 46 NNNNNNNNNN ........................ TCGTAGAGACGGCGTGTGTAGAGGCATGGCTCAGAACTGTAATACT 1013893 24 100.0 42 NNNNNNNNNN ........................ GGCGGCTACCACAGCGGCTAGAAAAGCCGACGGCAAGGCCAG 1013959 24 100.0 43 NNNNNNNNNN ........................ TATGCCACTTGTGCCGCCATGGTGCCGTAGGCGATAAATCCGC 1014026 24 100.0 42 NNNNNNNNNN ........................ GGCACGGTACGTAGGCGAGAACTATAAAATGGCCTACTGGCC 1014092 24 100.0 41 NNNNNNNNNN ........................ CTACAATCTCTAACGTCTCCCCACAGTAGGGACACGATACT 1014157 24 100.0 48 NNNNNNNNNN ........................ TCTCTAACCAAACTGTGTACGAGAATCTTGACGGCCAGCCTCCCCAAT 1014229 24 100.0 43 NNNNNNNNNN ........................ TCTACGTACACTATGCCGACGCAGTGTTGGTATCTGTTACTCG 1014296 24 100.0 41 NNNNNNNNNN ........................ AACACGAGGCGGCTAAGCGGATGGCCCTCGAGGGAGAGATA 1014361 24 100.0 45 NNNNNNNNNN ........................ CCTTACCACATGCTCCTCTGGGACGCATAACGATGTCATTGGCAA 1014430 24 100.0 43 NNNNNNNNNN ........................ CAGTAACGCGTATAGTCGTTGCGCGAGCCTACTTTGTTCGCCT 1014497 24 100.0 45 NNNNNNNNNN ........................ ACTGCAACGCGACGGAGACGCGACGCAACTATGACAAGTTCAAGA 1014566 24 100.0 42 NNNNNNNNNN ........................ TTACACAAGCGTTAGTGGATGTATTGGTGAGCAAGTGCGATA 1014632 24 100.0 42 NNNNNNNNNN ........................ AATGCTTAAGGGCCTGGGACCCCGACCGGGGTCCCGGGGCCA 1014698 24 100.0 45 NNNNNNNNNN ........................ TGCTTGATGACGTCGGGAGGCGGATGGCCAGTTACGCCAATACTA 1014767 24 100.0 43 NNNNNNNNNN ........................ ATAATAGATACTTAGAAGTAAAATATCCAAACGGCATTAGGGC 1014834 24 100.0 40 NNNNNNNNNN ........................ TGCGCAGTTTCCTCTTGAACCCGCCGTACAGTAAGCCATG 1014898 24 100.0 41 NNNNNNNNNN ........................ GGTTTCACAGACGCACGCGGTGACATGCGCAAATACAGACT 1014963 24 100.0 39 NNNNNNNNNN ........................ GCAAAGAACCGTGCAAGATTTCTCCTGGCACCGGGGTCA 1015026 24 100.0 41 NNNNNNNNNN ........................ ACCGCTTTAGCGGCCTTGATTAAATCTTCGTCTGAGAGAAG 1015091 24 100.0 44 NNNNNNNNNN ........................ AACAAACCCCACAAATAGACAAGCGGGCAATCATGGCAATTATC 1015159 24 100.0 43 NNNNNNNNNN ........................ CAGTTACGCCTTGTCCGCTTATTCTGTGGGCGATCATGTGGAA 1015226 24 100.0 41 NNNNNNNNNN ........................ TGTCTTCATATATTGTGCAGTCCTCCCCTTCGCACTGCACT 1015291 24 100.0 41 NNNNNNNNNN ........................ AGCCGACTACGTGGTGAGACAACAATCCAGCGACCGCGACT 1015356 24 100.0 40 NNNNNNNNNN ........................ ACGTTGCTTCCCCTCCGATCTTCCCCCACGACCTGGGGGA 1015420 24 100.0 46 NNNNNNNNNN ........................ GCGCATGTATATCACGTCTTTTTTCTTGGCCCCCCCCTTCCGTTGC 1015490 24 100.0 43 NNNNNNNNNN ........................ AAGGCCGCGCTGGGCCACAGCCAAGGCAGTATCGTGTAGAGGA 1015557 24 100.0 42 NNNNNNNNNN ........................ GGGATCCCAGTCGGGGCCCTGGGGCCAAAGAACAGGCAAAGT 1015623 24 100.0 44 NNNNNNNNNN ........................ CGTGTCCAGATACCTAGCCGAAACACTCTGCGGCCCGTACATAT 1015691 24 100.0 42 NNNNNNNNNN ........................ GCTTTGCGCACTAAAGAGCTGTCGGACGACGTCATAGTTTTG 1015757 24 100.0 37 NNNNNNNNNN ........................ GTAGATATTCTGAGTCGGATAATTTAAAGTCCGGCCT 1015818 24 100.0 41 NNNNNNNNNN ........................ TCTACGAGGACGTAGCGCTCTCCTTCCTGCCTGACAAAGAC 1015883 24 100.0 41 NNNNNNNNNN ........................ GTCACGCGGTACAAATGCACGCATGAAGGCGTAGACGTCTT 1015948 24 100.0 43 NNNNNNNNNN ........................ TAAGCCATAATTGTGCAAACATCTGCATACGCGTAACAGCTTG 1016015 24 100.0 37 NNNNNNNNNN ........................ CTTGATACTTCCTTATCGTGTCATAGCTACGACCTAG 1016076 24 100.0 41 NNNNNNNNNN A....................... GCCTTATTGTTAATCCAAGGCCGAATTTGTCGAATACAACT 1016141 24 100.0 44 NNNNNNNNNN ........................ CCACGTACGAGTTCGGCGGCGCGTGCCGCGGCGGCTCCTTGCCC 1016209 24 100.0 41 NNNNNNNNNN ........................ ACGTGCGCCTATTTGCAGACCCGGTGCCCGTAGAGGCGAAT 1016274 24 100.0 40 NNNNNNNNNN ........................ TCTTGCACTGCCTCGGCCAGCAAGCGCGCCAGCATGTGCG 1016338 24 100.0 43 NNNNNNNNNN ........................ CTTAGCACGTGAAGCTGTGATTGCGCTCATTACTGCTGGGAAT 1016405 24 100.0 54 NNNNNNNNNN ........................ CTATAATATCAACTATCTTTATCCTATCCTCACCACTACGATAATAGTAAATAG 1016483 24 100.0 46 NNNNNNNNNN ........................ CGCATCTCACTACAACGCCGACGTAGTCGGTTTGGCGCTGTTACTC 1016553 24 100.0 42 NNNNNNNNNN ........................ GCTGAGCCGGGGAGCACGACAGCTGTCGTAGCCACCGCCTTA 1016619 24 100.0 46 NNNNNNNNNN ........................ CTTGTGGAGAGGTACCTGCGCGCAATCGGCGACGAGCTGATTATGC 1016689 24 100.0 42 NNNNNNNNNN ........................ CTTTTCTCTCTTTTGCCTTTTTCGGCGCGAGAGTTGAACTAA 1016755 24 100.0 43 NNNNNNNNNN ........................ ATCTTATTATCACGTGTCGTTACTAATCAGCACGATGATGGCG 1016822 24 100.0 44 NNNNNNNNNN ........................ CACCTCTTCCAGCGACCTCTTCACGTCGAGGTGGGCTTGTCTAC 1016890 24 100.0 40 NNNNNNNNNN ........................ TTTTTCTTTTCTTTTTCAGGTGAGGGAACCGAGTTGGCGT 1016954 24 100.0 46 NNNNNNNNNN ........................ GCTTTCGCCTGATGAGACGCCTGAACGCGGCCAGTACGTCTCGGGC 1017024 24 100.0 46 NNNNNNNNNN ........................ ACAACGGCTGGGTACGGAATACCGCTCAGCAAAAGGCTGAGCATAG 1017094 24 100.0 44 NNNNNNNNNN ........................ ATTTAAACAGATGCTTACTGCCTATACATGTCGACCGGGAAAAT 1017162 24 100.0 43 NNNNNNNNNN ........................ TGCCGTATACAAAGCACAGCTACTACGCAGACGTGCTTTACGA 1017229 24 100.0 47 NNNNNNNNNN ........................ TTAAGCAGTAGCGTGGTAAGCGCTACGTTGCCCGCAAGGCCTAACAG 1017300 24 100.0 55 NNNNNNNNNN ........................ GGTGTATACAGCCTTTGTCAAGGCTGTATACGAGGTGGTTGGCAAAACTCGCGCA 1017379 24 100.0 44 NNNNNNNNNN ........................ GCAGAAGTACATGACGTTGTCATATATTTCTCCCGCTATTTCTT 1017447 24 100.0 36 NNNNNNNNNN ........................ ACTTGTAGAGGGCTCTCCCCAAGTCGTAGAGGAGCC 1017507 24 100.0 42 NNNNNNNNNN ........................ TTAACATTTTTTCATTAATCATATTTACGTAAAATTCATTAT 1017573 24 100.0 45 NNNNNNNNNN ........................ GGTAGTAACATTTTGTCAAACTCGCTATCGGCTTCTTTTTCACGA 1017642 24 100.0 43 NNNNNNNNNN ........................ CCACTCTTCTTCGCTTAATGAGTCTATTTCTTTTAACACGTCT 1017709 24 100.0 38 NNNNNNNNNN ........................ TTGGAATAGACTCCTCCAACGCTAGCTGAGCTCTGCAT 1017771 24 100.0 41 NNNNNNNNNN ........................ CAGGCCGCGGCGTGCACAGAGGGGGGCACTGAGAAGACGCC 1017836 24 100.0 47 NNNNNNNNNN ........................ CTTGTCGCACATATCGCTTAGTGTGTAGAACTGGCATACCTGGTAGT 1017907 24 100.0 50 NNNNNNNNNN ........................ ACTAAGTGGGGTCTACGGCTGGGGTTTTGGCACCCCCACATTATAAATCT 1017981 24 100.0 41 NNNNNNNNNN ........................ ATGCTGTAAAGCGCCAGCGCTCTGCATGTGCACCTAATAAC 1018046 24 100.0 46 NNNNNNNNNN ........................ CTTATTGTGTTTGGGCTGGATATTGGACATGGCTGTGCGTATGCAA 1018116 24 100.0 41 NNNNNNNNNN ........................ TTTAAGAGGAGCGTTGTCAACGCCACATTTCCGCCCAAACC 1018181 24 100.0 41 NNNNNNNNNN ........................ TGCCAGCCGTGGAGCTACGCCACCACATTCTCAAGAGACAA 1018246 24 100.0 42 NNNNNNNNNN ........................ TTGGTTTATAAGCCGCCTCAATAAGGAGGTTGTAATCATGCC 1018312 24 100.0 44 NNNNNNNNNN ........................ AAGAGCTGTTACGCAGTATAGGCTGTCGGGGGGCGAAGTGGCCA 1018380 24 100.0 43 NNNNNNNNNN ........................ GAGGCCCAGTAGCGGCATAAGTTTGTCAAGCGCTTTTGATACG 1018447 24 100.0 40 NNNNNNNNNN ........................ TGCCGTTACGCGCCTCGGGTATTGCGCGCATCAACGCATT 1018511 24 100.0 42 NNNNNNNNNN ........................ GCTCATACGCGTATCTATACACCGCCTGCAGTGCGGCCTGTA 1018577 24 100.0 40 NNNNNNNNNN ........................ ACACTACGGCTTTTAACGGTTTTTAGTTTTTCTAGCCAAT 1018641 24 100.0 42 NNNNNNNNNN ........................ CGTATACTCACCACTTTATATTCACCCATAGAAATCTAAACA 1018707 24 100.0 44 NNNNNNNNNN ........................ AAAATATCACACTGGTGACCCTCTCTAGTACAGGGAGTGGCGCC 1018775 24 100.0 42 NNNNNNNNNN ........................ TTCTTCGACAGGCAGGGAGAGGAGAGGTACGCGCTGTACAAG 1018841 24 100.0 42 NNNNNNNNNN ........................ ATTAGTATTTGGTCTAGCAGGTCTTTTATTTGTAGATATTCT 1018907 24 100.0 1 NNNNNNNNNN ........................ NNNNNNNNNN ========== ====== ====== ====== ========== ======================== 90 24 42 GAATCTCAAAAAGAGGATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: F [matched GAATCTCAAAAAGAGGATTGAAAG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [790,62] Score: 0.18/0.18 # # Final direction: F [5.18,0 Confidence: HIGH] >NC_009376 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 1307876 24 100.0 42 GGTGTTGAAC ........................ GAACGCCATGGCCCAAGCCCTGGCGGAGTACGCGGTGAGATC 1307942 24 100.0 47 CGGTGAGATC ........................ ACTAAGGCAGATGTAGTTATTCCACACGGCGTTAGTGATGATATCAT 1308013 24 100.0 44 ATGATATCAT ........................ GAGACTGTCAGACCGCCATTGGAGGCGCCGAAGGAGAGAGCCGC 1308081 24 100.0 AGAGAGCCGC ........................ TGGGGGTTCT ========== ====== ====== ====== ========== ======================== 4 24 44 CTTTCAATCCTCTTTTTGAGATTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: R [matched GAATCTCAAAAAGAGGATTGAAAG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [38.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [42,34] Score: 0/0.18 # # Final direction: R [0,5.27 Confidence: HIGH] >NC_009253 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1079904 32 100.0 35 NNNNNNNNNN ................................ GCATTAATTACCCCCCTTTGTCCAAACTGTGATAC 1079971 32 100.0 34 NNNNNNNNNN ................................ AATAATAGCCCTGGTTACCTAGAAGCAATAAGGC 1080037 32 100.0 34 NNNNNNNNNN ................................ ACCGCCTCATTGTCAGTGGTTATTATGCAATGTA 1080103 32 100.0 33 NNNNNNNNNN ................................ GTTAATGGCATGGTTCTATGCTGGCCTACAGGG 1080168 32 100.0 34 NNNNNNNNNN ................................ AGAAGATAATTTGTTCAATATGCTTGCTGATAAA 1080234 32 100.0 33 NNNNNNNNNN ................................ TATCTATAGAATTTTTAATATGTTCTTTTAACT 1080299 32 100.0 34 NNNNNNNNNN ................................ ATTTAGTAAACCATTTTCAAGAATATATAAAGCA 1080365 32 100.0 35 NNNNNNNNNN ................................ ACTTTGGATTGCTTTGAATTGCTAGGTTTTTTGAA 1080432 32 100.0 33 NNNNNNNNNN ................................ TCCATTGTTCTATTTCTGTATCCTGGAAAATTT 1080497 32 100.0 33 NNNNNNNNNN ................................ TCCATTGTTCTATTTCTGTATCCTGGAAAATTT 1080562 32 100.0 33 NNNNNNNNNN ................................ AGTAAACACTAAGACAAACAAAGTATATTATAT 1080627 32 100.0 34 NNNNNNNNNN ................................ ACATACAATCACACCACAGACAAATTTAAAACGC 1080693 32 100.0 35 NNNNNNNNNN ................................ TGCGGCAAGAAGTGCCTTTTCAACTGCATTATCAA 1080760 32 100.0 34 NNNNNNNNNN ................................ GGAAAGAGGGCATTAATGAGCCGGTCGAAGTCCC 1080826 32 100.0 34 NNNNNNNNNN ................................ GTTAATGAACCTGAACTCGAAAATTGGGACGGTA 1080892 32 100.0 33 NNNNNNNNNN ................................ AAAAATTACCGGACAGACAACAGATTAAATACG 1080957 32 100.0 36 NNNNNNNNNN ................................ TGAAGTTGATGCGTTATCAAGTTGCTGCTTTGATAA 1081025 32 100.0 38 NNNNNNNNNN ................................ TAGCTCCGTTCATGTCGTACCATTTATTGTTGTGGTAT 1081095 32 100.0 37 NNNNNNNNNN ................................ TAGCTACAATTTTAAGCATCATCTTCCTGTGTTCAAT 1081164 32 100.0 33 NNNNNNNNNN ................................ TCATTGATGCCGTCACCTCTGACATAATGCAAC 1081229 32 100.0 33 NNNNNNNNNN ................................ TGAGAAAAAAGGTTACCTTAAAAAAATGATACC 1081294 32 100.0 36 NNNNNNNNNN ................................ TGTACTTCGGCAGGGCATACATTACCCCTTCCTCTG 1081362 32 100.0 34 NNNNNNNNNN ................................ ATTTTTGTAGCGACAATAATAATCAATTATCAGA 1081428 32 100.0 37 NNNNNNNNNN ................................ ATACCGGCCCTGGGTGTCAGGAGAAGCGGGAAGAGAT 1081497 32 100.0 33 NNNNNNNNNN ................................ AATGGTACTGCTACTATTTGGTAGGTAGCACTC 1081562 32 100.0 33 NNNNNNNNNN ................................ AATAATTGCTATGCCTGAGTAAATTCCATGTAC 1081627 32 100.0 35 NNNNNNNNNN ................................ TTCGTAACCAGACCGGGCATATCCGGTCTGGTTAA 1081694 32 100.0 36 NNNNNNNNNN ................................ TGCTTGTGACATTGTTCTTATCCTCCGTAGTTCGTC 1081762 32 100.0 34 NNNNNNNNNN ................................ ATTTTGTTCTTTTGTTGTAATCTCCTGTACTTTT 1081828 32 100.0 34 NNNNNNNNNN ................................ TTTTTCCAAACGCTTTAATTCTACTTCCGCCTCC 1081894 32 100.0 35 NNNNNNNNNN ................................ ATTGCACTTTGATATGGTTCTGTAGAATCTTTCAT 1081961 32 100.0 33 NNNNNNNNNN ................................ ATCTAAAAGTGATTGTTACTATATTTTATCTGC 1082026 32 100.0 35 NNNNNNNNNN ................................ AAATTTTACTATATCACCTTTAAATTCTCCTGTGC 1082093 32 100.0 35 NNNNNNNNNN ................................ TGAAGAAGATGGATTATGTGTGATTAGACAAGATA 1082160 32 100.0 35 NNNNNNNNNN ................................ CATGTGAAATACATTATGGACTTACATATGAAGAT 1082227 32 100.0 34 NNNNNNNNNN ................................ CGAAAGAGCATTGGAAATACATTGAATTAGGGTA 1082293 32 100.0 35 NNNNNNNNNN ................................ ACGTAACTAAAGTTTTTACCATACCATTATTTCAC 1082360 32 100.0 35 NNNNNNNNNN ................................ TGATTCGCTCAATACATGACATAACTGCACATGAC 1082427 32 100.0 37 NNNNNNNNNN ................................ AATTAGATCCGGAGGAAATACCGCAAAGTGCGCACCC 1082496 32 100.0 33 NNNNNNNNNN ................................ AGCTTTCATTAAATCTTTAATACTAGGCTCTAT 1082561 32 100.0 33 NNNNNNNNNN ................................ ATATTCGGTTTGATCTAGTTCTGTTGCTATGTC 1082626 32 100.0 35 NNNNNNNNNN ........A....................... CTCGAAAAAGTCTTAATTCTACGGTGTTGCGATTG 1082693 32 100.0 34 NNNNNNNNNN ................................ ATCGACTTCAAGCTCAACGCCTAAAAATATATTT 1082759 32 100.0 35 NNNNNNNNNN ................................ ATTGTCATAGCATAATTCATTGCAGTGACTACATG 1082826 32 100.0 34 NNNNNNNNNN ................................ TTATCTGTGAATACTGTCAAGAAATTACTTTAGT 1082892 32 100.0 38 NNNNNNNNNN ................................ TTCTTCCAACAGGATATTATTCCATTGCTTATCTTTAG 1082962 32 100.0 36 NNNNNNNNNN ................................ ATTATGTACTATAGTAATTTGCCCTCTTTGGCTCCC 1083030 32 100.0 34 NNNNNNNNNN ................................ ACTATAACAGATAACAGTCATAACCTACATAACA 1083096 32 100.0 34 NNNNNNNNNN ................................ CCTAGACTGCAATACTATACATACCACTTGACAG 1083162 32 100.0 32 NNNNNNNNNN ................................ TGATTACTATTATCAACGAGTAAAAAATTTAC 1083226 32 100.0 35 NNNNNNNNNN ................................ GGTGATGGTGCTATCTTCGTTTGTGACTATGTGAT 1083293 32 100.0 34 NNNNNNNNNN ................................ ATATTCGCCCGCGATACCGGCCCCTTTCACTGTA 1083359 32 100.0 34 NNNNNNNNNN ................................ GAAATACCAGGTACATTAGACTGCAAGTCAAACT 1083425 32 100.0 1 NNNNNNNNNN ............TGTCAATTC.CA.A.T...T NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 54 32 34 GTCGCCCCTCACGCAGGGGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [6,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.60,-6.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [171,177] Score: 0/0.18 # # Final direction: F [5.65,0.27 Confidence: HIGH] >NC_009253 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1764821 37 100.0 39 AAGCGCAGGA ..................................... AACAAGTCTAATACCAGTAGCGAGTATCCATTCTTCCTC 1764897 37 100.0 38 ATTCTTCCTC ..................................... AAAATATACATAAGTAAATTGGCTGTGGTTAGTTCTTC 1764972 37 100.0 40 TTAGTTCTTC ..................................... TGAAATATGGATTCAATCTTTAGAAGGTGGCACTATATCC 1765049 37 100.0 38 CACTATATCC ..................................... AGCTGCACTGTTATAAGATTCACTGATTGTAGCTGATT 1765124 37 100.0 39 GTAGCTGATT ..................................... GTATGCTTCTTTATATTCTTAATAACTGTAAATGGTCTA 1765200 37 100.0 39 AAATGGTCTA ..................................... GCATTATTATATTTGCTTGTTTCTTCCGTTAACCACTTT 1765276 37 100.0 38 TAACCACTTT ..................................... ACAAATAAAAAAGGTCAGATGACTTCTGTTACATTAAC 1765351 37 100.0 37 TTACATTAAC ..................................... TGAAAGTGTCAGTATGCATATTCAAGCAATTCAAAAA 1765425 37 100.0 42 AATTCAAAAA ..................................... ATTTTAAAATTATTCATTTTTACCTCCTATTCTGTGACTGGT 1765504 37 100.0 45 TGTGACTGGT ..................................... GGTATCCACCTTCGGCAGGTGAAACAAAAAAGTGGGCAAGGCCCA 1765586 37 100.0 40 GCAAGGCCCA ..................................... GTATAGCAGAAGTTGGAGTATTACAGCCGATACTGGTAAA 1765663 37 100.0 39 TACTGGTAAA ..................................... TTGAGGAATGATGGCAGTAACACTGCTTTCTATGCCTGC 1765739 37 100.0 38 CTATGCCTGC ..................................... TCCTTACCCCTTTAGCAGATATACAGTCATCTTCTTCA 1765814 37 100.0 37 ATCTTCTTCA ..................................... ATTACACTATTCTACCTATGTAATTAATTTCCTTTAC 1765888 37 100.0 40 TTTCCTTTAC ..................................... TATATTCAACACACCATCCTTTTACCTATCTCGGCAATAT 1765965 37 100.0 TCGGCAATAT ..................................... ATTTGAAATT ========== ====== ====== ====== ========== ===================================== 16 37 39 GTCAAAACACAAAATAATTCCCTTTGGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-6.60,-6.60] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [524,727] Score: 0/0.18 # # Final direction: F [4.5,0.27 Confidence: HIGH] >NC_009376 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 999187 24 100.0 43 AGAAACCCCA ........................ AACCCGCCAAGGCATTACTGGATCGCCGCCGTCGTTTTGACTA 999254 24 100.0 40 GTTTTGACTA ........................ CGTATATGTGGAGCTCTGGGGGTATCCTGACCCCCTCTAT 999318 24 100.0 48 CCCCCTCTAT ........................ AGCAGGACGTGTCTAAACAGCTTGACAGAATTGCATCCTTGGCACAGC 999390 24 100.0 47 TTGGCACAGC ........................ AGACGATGTAGTCTTGGCTTGGGCCGTCTTTATACACGCCGAAGCCG 999461 24 100.0 45 GCCGAAGCCG ........................ GTCATCACGAAGTATAGTATCAACCCGCCGGCTACTGCGATAACT 999530 24 100.0 42 TGCGATAACT ........................ TGCCGTACTACGGCAAAGCAATATACGTCGTTAAAGAGAACT 999596 24 100.0 42 AAAGAGAACT ........................ AAGCTGTACATCGCCTCTGAGCCCAACGTCTTCTACGGCGAG 999662 24 100.0 44 CTACGGCGAG ........................ TCATCATGGCCATAAACACGAAGAGCCACGGCGAGAAGCCCCAT 999730 24 100.0 45 GAAGCCCCAT ........................ GACGTTAACTGCTGAGTACACTTCACGCTCGTGCAACAGCTTAAG 999799 24 100.0 44 ACAGCTTAAG ........................ GCCAGAGACATTCGGCGTATTGTTGCGCAGGCTGGCGTCCTACT 999867 24 100.0 45 GCGTCCTACT ........................ ACTAACGCAGCAATCACTATCACCACCGCGATTATTAGTATTGTT 999936 24 100.0 43 TAGTATTGTT ........................ TTTGCACGGCGAATGTAGCTATCTGCCCGGCTGTTGTAATAAG 1000003 24 100.0 39 TTGTAATAAG ........................ CTGCTGGGTCTGGGCGCATCTGTTGCGTTAACTACGTTG 1000066 24 100.0 43 AACTACGTTG ........................ CCAAAACCGTGAGGCCCGCCTCCAGTCTCCGTCTGGACTTTCT 1000133 24 100.0 46 TGGACTTTCT ........................ AAAAGGTTTTGTACGGCGAGGCCACGTACTTCCACTTAAACATGGC 1000203 24 100.0 44 TAAACATGGC ........................ ATCTGAATACCGTGGCCGGCATCGATGCAGTTGACGACGACGAA 1000271 24 100.0 45 CGACGACGAA ........................ CAGCTCTCTTCTTTTTTCCCGCCCGCCTTTTTGCAAAAACTAAAT 1000340 24 100.0 42 AAAACTAAAT ........................ GGAAGGCATGTGGCGAAGAGGATAAGTTTGACAGAGCTTGCT 1000406 24 100.0 43 AGAGCTTGCT ........................ ACATATGGAAGCGCCGAGAGGCCGAAGATGCGTCTCATGCAGG 1000473 24 100.0 42 CTCATGCAGG ........................ GTTTTGATATCAAGCTCCGGCACTACATCAGTACAATACGTC 1000539 24 100.0 42 ACAATACGTC ........................ CGTAGTCGGCTGGGCGGTAGCCGGAGGAGGTCTGCACCACTG 1000605 24 100.0 40 TGCACCACTG ........................ CAGGTAGAGAAACAGCCTGAGGTGCGTCTGCCGGATGAGA 1000669 24 100.0 44 CCGGATGAGA ........................ AGACATGTATATCTCAGACAGCTCCTTCTTAGCCACCGTCTGGA 1000737 24 100.0 43 ACCGTCTGGA ........................ CAGGCGCCCTGACGCCGGGAGTCTTCGCGCCGGTTTCGGAGAG 1000804 24 100.0 38 TTTCGGAGAG ........................ ACTCGTACACAACCTCGGCTGGGCTTGACATGTGGAGA 1000866 24 100.0 42 CATGTGGAGA ........................ ATAAAAACTTTAACGAACCGAACCCCCGCCCTAAAGGGCGAG 1000932 24 100.0 42 AAAGGGCGAG ........................ ACACGTCGAAATGCGGCCCAACAGTTTTGCTCACCCTGCCAA 1000998 24 100.0 41 ACCCTGCCAA ........................ CCTGTCTTAAACGGCACCATGCCGGTGGCGATCCCCATCGC 1001063 24 100.0 46 TCCCCATCGC ........................ TGTTGTAGCCCCCGACGCCCATATGGCTCCCGGTGCCGCCCGTCTT 1001133 24 100.0 46 CGCCCGTCTT ........................ GCGACATGGACATAAGCGACATGTACATCAGCACATACGCGAAGGG 1001203 24 100.0 39 ACGCGAAGGG ........................ TTGCTAAGGCGAGTCCTCTCTTCGTGTACTCCTCAACAT 1001266 24 100.0 44 TCCTCAACAT ........................ GAACTGCTTGAGCCGGACGAGCCGCCGCCGGAGCCGCTTAATGT 1001334 24 100.0 43 CGCTTAATGT ........................ AAGACGTCGATGGCGTATGGGAAAGGCGGCGGCTCTGCTACCT 1001401 24 100.0 47 TCTGCTACCT ........................ CTCTGACATTATCCGCCACTTCCCTCTGGAGGCTGTTCAGGTGGCGG 1001472 24 100.0 CAGGTGGCGG ........................ TCCGCCCCGA ========== ====== ====== ====== ========== ======================== 35 24 43 GAATCTCAAAAAGAGGATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: F [matched GAATCTCAAAAAGAGGATTGAAAG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [58.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [328,994] Score: 0.18/0.18 # # Final direction: F [5.27,0.18 Confidence: HIGH] >NC_009253 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 586379 30 100.0 37 ATTTTGACGG .............................. CCGTATTTTTAGGAAGCAGGGATCAAAGCACAAAAGA 586446 30 100.0 38 GCACAAAAGA .............................. TCCCTATCCTTGGCAGTATCGTTTTCTGGAGGTACTGT 586514 30 100.0 35 GAGGTACTGT .............................. ATTGTTTCAAGGCTTGGTTGCAATTTTCCGGTTTC 586579 30 100.0 39 TTCCGGTTTC .............................. ACAATTACGAAAACGTATTAGTTACCGAGGAAAATATTG 586648 30 100.0 36 GAAAATATTG .............................. AATATCAAGATGCTTTAAAACTAGGCGTTAAATTTG 586714 30 100.0 37 GTTAAATTTG .............................. GTTTTTTGTTCCAATTGTGCCCCAAAACTTGGGGCAC 586781 30 100.0 37 CTTGGGGCAC .............................. CACCATGCCGGGGCTAGGTTTACAAAGATTAGCATAC 586848 30 100.0 38 ATTAGCATAC .............................. ATTTACCAATAAATGTATATTATATAATTTGAATATAG 586916 30 100.0 36 TTGAATATAG .............................. ATTTGAGTCTGCTGCACTCAATTTTCGGAGGGTATA 586982 30 100.0 37 GGAGGGTATA .............................. CTACATAATATATAAATTATGTAGCGAGTTATCAGCC 587049 30 100.0 36 GTTATCAGCC .............................. GTTTTTTGTTCCAATTGTGCCCCAAAACTTGGGGCA 587115 30 100.0 35 ACTTGGGGCA .............................. CAAAAGATAAAAATAATAGTATCATTTAATCAGGG 587180 30 100.0 37 TTAATCAGGG .............................. ATGCCCGTCCGGTAGAAGAACCAGCAGGCAAACATCC 587247 30 100.0 38 GCAAACATCC .............................. ATACTTTTATGCAGTCGATGTTTTCTTCGGTGACACGG 587315 30 100.0 40 GGTGACACGG .............................. ATAATATTAGGGATTGCAATATACAAGTTTGGTCTTCTCC 587385 30 100.0 37 GGTCTTCTCC .............................. TTGTGCCTACCCTGTTATGTAGAGTAAGCACTAAAAA 587452 30 100.0 35 GCACTAAAAA .............................. CTATTTTTTGGTTGGTGTTTGTCATTGTTATGCAC 587517 30 100.0 36 TGTTATGCAC .............................. GTAATATTGCATACGAATTTCTTCATGGTATCATCC 587583 30 100.0 36 GGTATCATCC .............................. GAAATATCCAAAAAGCTTTAGAAAAACGGCTAGAGA 587649 30 100.0 35 CGGCTAGAGA .............................. TTGGCAAGTACGCTTTAAATTCCGGTGAGAAGATC 587714 30 100.0 TGAGAAGATC .............................. ATTGCTAACT ========== ====== ====== ====== ========== ============================== 21 30 36 GTTATCAGCCTACCTATAAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.30,-1.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [56.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [199,83] Score: 0.18/0.18 # # Final direction: F [4.68,0.64 Confidence: HIGH] >NC_009328 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 346707 30 100.0 36 CTTTTTGGGG .............................. GGTATTCTAGGCGTAATCGTCGCTGATGGTAAGGCA 346773 30 100.0 37 TGGTAAGGCA .............................. GACGAGATGGAACAAAAAGAATCCCGGCAGGTCGACC 346840 30 100.0 37 CAGGTCGACC .............................. TCGTTCAGGACCGCCGCGATTCGGCCGACGGCCACAC 346907 30 100.0 36 ACGGCCACAC .............................. AACGTTGTTTTGTCTTGCAAGTCTTCGATTGTGCAA 346973 30 100.0 38 GATTGTGCAA .............................. TTCGTTACTTTCTAAAGATGAATTGATTCATGCTATTT 347041 30 100.0 CATGCTATTT .............................. AAATGACCTGC ========== ====== ====== ====== ========== ============================== 6 30 36 GTTTGTATCGTACCTATGAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.80,-0.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [206,1325] Score: 0.18/0.18 # # Final direction: F [5.37,0.18 Confidence: HIGH] >NC_009436 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1518296 28 100.0 32 GATTGCTTCA ............................ GTTAGCCCGAGGAAATCATTCAGCGTGCCATC 1518356 28 100.0 33 GCGTGCCATC ............................ CTCCGGGCCTATCGGTTGGCCCGTCCACTGGTT 1518417 28 100.0 32 TCCACTGGTT ............................ TGCGTAAACGCCATTGACGCAGGCAGGTGTCC 1518477 28 100.0 32 GCAGGTGTCC ............................ GCTTGGGCGCTTCTCACGCAGCCTGCGGTCAA 1518537 28 100.0 32 CTGCGGTCAA ............................ TCGAAACAATCACCGCGTGGCTCGCTCGTACA 1518597 28 100.0 32 CGCTCGTACA ............................ ATGAGCGTGGCTTCAGGCTCACTGACATTGAA 1518657 28 100.0 32 TGACATTGAA ............................ TGCACCCTTCCGGTGAGTGAATAGAGTATTGC 1518717 28 100.0 32 AGAGTATTGC ............................ TCACAAAATCAAATCGATACGGCCTGCGAATA 1518777 28 100.0 32 CCTGCGAATA ............................ TCCATTGCGTCCAGTTCGTCCAGCTCCGGATT 1518837 28 100.0 32 GCTCCGGATT ............................ TGCTGCTGCTCGCCCAGATAACGCCAGCGTCG 1518897 28 100.0 32 GCCAGCGTCG ............................ TCCGCCGCTTCGCCTTTAATCACGATCATCAG 1518957 28 100.0 32 CGATCATCAG ............................ TAAACATGCCCCTTTTCCGTCATTTGCCCCCA 1519017 28 100.0 32 TTTGCCCCCA ............................ AGTTCAGGCCCTGCGCCTGCTGCTGGAATTGC 1519077 28 100.0 32 CTGGAATTGC ............................ TATCTGCGCGTGACCAATGATTCACAGCCGTC 1519137 28 100.0 32 CACAGCCGTC ............................ ATCAACCTGTCAGCGGTTACTCAGCGCGGACT 1519197 28 100.0 32 AGCGCGGACT ............................ GCCAGCATCGAGCTGCGACCGAAAAGCCCCTG 1519257 28 100.0 AAAGCCCCTG ............................ TCTGTGAGCT ========== ====== ====== ====== ========== ============================ 17 28 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [200,123] Score: 0/0.18 # # Final direction: F [1.51,0 Confidence: HIGH] >NC_009436 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1534583 28 100.0 32 NNNNNNNNNN ............................ GATGGGGTGCCCGTGGTTTGGGACGTTTTCTA 1534643 28 100.0 32 NNNNNNNNNN ............................ GTAAACGGCCGCTAATGGCCGTTTATCAGGAG 1534703 28 100.0 32 NNNNNNNNNN ............................ GACTCAACAATCCCCGTGTGACCTTTACCGCC 1534763 28 100.0 32 NNNNNNNNNN ............................ TCGCTGTGATACAGCCCGCTATCGCCCGGTTT 1534823 28 100.0 32 NNNNNNNNNN ............................ TACACGATCATACGATCCCAGAAATTCAGCAC 1534883 28 100.0 32 NNNNNNNNNN ............................ TGTTATCTGACACGTTTTGATTCATGTTCACG 1534943 28 100.0 32 NNNNNNNNNN ............................ GGCAGGCCGCAGCACGTTTCCCAGCGGTTAAT 1535003 28 100.0 32 NNNNNNNNNN ............................ TCGCTGGGTAATTCACGGTTTGTGCGCATAGC 1535063 28 100.0 32 NNNNNNNNNN ............................ AGTCATATCCGATGCTGGAAGCAATCAAAGCG 1535123 28 100.0 32 NNNNNNNNNN ............................ GTTCTTCAGCGTGAATTTGTGGCCAACGTTCA 1535183 28 100.0 32 NNNNNNNNNN ............................ ATTCAACACGGGACGATAACGATTCACCGACT 1535243 28 100.0 33 NNNNNNNNNN ............................ GGACTCGGAGAGCCCGAATTTAACACCGAGCAA 1535304 28 100.0 33 NNNNNNNNNN ............................ AATCAGATAGTGACTAGCCGTGGGGACTACACC 1535365 28 100.0 32 NNNNNNNNNN ............................ GCGCGCTCCTGACGATGTTTAAATGCCCAACC 1535425 28 100.0 33 NNNNNNNNNN ............................ ACCCGGCAAGATAAAAAATATCGTTCTTGATGC 1535486 28 100.0 33 NNNNNNNNNN ..................C......... TCATGAGCGGGCCATGCACAACGCTGGACTCTT 1535547 28 100.0 32 NNNNNNNNNN ............................ AAAGGAGACAGAGGCAACGACGGTAACGCGGT 1535607 28 100.0 32 NNNNNNNNNN ............................ TTTGCCTGACGCGCTGAAAGGCTGACACGGGC 1535667 28 100.0 32 NNNNNNNNNN ........T................... ATCAGCGTCAACTTCGATCTCTTCGCCCTCTG 1535727 28 100.0 29 NNNNNNNNNN ...........C........T....... GCTCAGGAATCTTCCGGAAGATGGGGGGA 1535784 28 100.0 1 NNNNNNNNNN A..A.......CC........AGCC... NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 21 28 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [65.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [178,289] Score: 0/0.18 # # Final direction: F [1.65,0.27 Confidence: HIGH] >NC_009337 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1461368 32 100.0 36 CAGATAGGGA ................................ AGTTTTCTCAGGGAGCTACGCCGGCGCAACCGGATC 1461436 32 100.0 33 CAACCGGATC ................................ TGGCAGTAAAGCCCAGTGTCAGTACGCGACTGG 1461501 32 100.0 37 ACGCGACTGG ................................ CAGTCCCACTCCGAGATAGCCAGAGCCCGGTTGAAAG 1461570 32 100.0 CGGTTGAAAG ................................ GCGAGAATCG ========== ====== ====== ====== ========== ================================ 4 32 35 GTCGCGCCCTTCACGGGCGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [5,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.80,-7.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [56.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [179,105] Score: 0/0.18 # # Final direction: F [4.77,0.74 Confidence: HIGH] >NC_009337 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1462908 32 100.0 34 GAGTACTTCA ................................ TTGTTGTCGATAAGCCCTTTGACGATGCCGAGCC 1462974 32 100.0 33 ATGCCGAGCC ................................ CGTGAATCTGCTGGCGGGTATACTGACGGCGCG 1463039 32 100.0 34 TGACGGCGCG ................................ AGTGCAGGAAGGTACCAGTCAGAATAACCGTTAA 1463105 32 96.9 33 TAACCGTTAA ....G........................... CGCTGACTGACATGACCAAAGCGGCTGTCGGAA 1463170 32 100.0 32 GCTGTCGGAA ................................ ATAAACAGCTGAAAGTGAGAAACATCAAGAGA 1463234 32 100.0 33 CATCAAGAGA ................................ GCCGTCTATCTTCGCCTACAGTATTACCGTCAG 1463299 32 100.0 34 TTACCGTCAG ................................ ATCTCTGCGGCTATGTCCGATATCAAGTATGATC 1463365 32 100.0 33 AAGTATGATC ................................ GTACTGATACAAAGGAATGCCTTGGTGTAGTTT 1463430 32 100.0 35 GGTGTAGTTT ................................ ACGCGTAGTCATCGGATGACTACCAAAATGACTAC 1463497 32 100.0 34 AAATGACTAC ................................ CTTTTTTCTTGCCGCCTATACGCCCTGACTCCTT 1463563 32 96.9 33 CTGACTCCTT ....................A........... AAAGCCGTCACTTGATAAAGAACCGTCCTCTTT 1463628 32 96.9 33 CGTCCTCTTT .................T.............. ATAGTCTTTGACCGAACCAAAAAGCTGGATGGA 1463693 32 100.0 GCTGGATGGA ................................ ATGCGGGCGG ========== ====== ====== ====== ========== ================================ 13 32 33 GTCGCGCCCTTCACGGGCGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [5,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.80,-7.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [51,271] Score: 0.18/0.18 # # Final direction: F [5.18,0.92 Confidence: HIGH] >NC_009342 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 792955 29 100.0 32 NNNNNNNNNN ..G.G........................ TCCTGGCGGGATTCTGCACGCGTCGCACCGTC 793016 29 100.0 32 NNNNNNNNNN ............................. GGTCGACGTCTGTCTCTGCGCTGAGTCAGGCG 793077 29 100.0 32 NNNNNNNNNN ............................. CCGATGAGTCTCTCGGCTCTGTTGGCTAAGTG 793138 29 100.0 32 NNNNNNNNNN ............................. TCTGCGTCGTGTAGCGGGAACGGTGAGGAAAC 793199 29 100.0 32 NNNNNNNNNN ............................. AAAATTCCGGCTCCGTGACCTTAGCTATAGAC 793260 29 100.0 32 NNNNNNNNNN ............................. CTTTCTGATCCGACTTGACCATGTAGGAACCA 793321 29 100.0 32 NNNNNNNNNN ............................. AACCAGAAACAGACTATCTATGTCTGCCTAAA 793382 29 100.0 32 NNNNNNNNNN ............................. CTCAGGCAGCTATTGAGGAGCTGGGGTTGAGC 793443 29 100.0 32 NNNNNNNNNN ............................. GAGGCACTCCAGCAGTACGTCTCACGTGTCAT 793504 29 100.0 32 NNNNNNNNNN ............................. CGAGATGAGGGACGCAGCCATGTGTAATAGGA 793565 29 100.0 32 NNNNNNNNNN A............................ CCCTCGCGAAGCTAGGCCAATTCCGCCCAATC 793626 29 100.0 32 NNNNNNNNNN ............................. CACAAACCAGCGCCCCAAATAACACGGCCTGA 793687 29 100.0 32 NNNNNNNNNN ............................. TTGAATAATGTTGCGTAATGTAACATCTTGCT 793748 29 100.0 32 NNNNNNNNNN ............................. CGCCCCAAGCATCAAACTGGTTGCCGTACTCA 793809 29 100.0 32 NNNNNNNNNN ............................. GTTAATGCACTTGATTTTCTCTACTTTTGGTA 793870 29 100.0 32 NNNNNNNNNN ............................. CATGATGCGCGACGACGGCACGGTGTGCCCTG 793931 29 100.0 32 NNNNNNNNNN ............................. GCAAGCTCCTCATCGCGGAAATCCACATCAGT 793992 29 100.0 32 NNNNNNNNNN ............................. CAACCCCCACGGGTCTTCTGCTCACGAAGCTC 794053 29 100.0 32 NNNNNNNNNN ............................. AATCACCACATATCGCACTGCTCTGCTGACTG 794114 29 100.0 32 NNNNNNNNNN ............................. GATGAACCTGGACTCCACCAACGCCACCAACG 794175 29 100.0 32 NNNNNNNNNN ............................. GATGAACCTGGACTCCACCAACGCCACCAACG 794236 29 100.0 32 NNNNNNNNNN ............................. GCGATGTGCTGGATCTGCTCTTCGGTCAAAAT 794297 29 100.0 32 NNNNNNNNNN ............................. GCTCCTCGGTGATGATGTCGAATCCGAAAAGT 794358 29 100.0 32 NNNNNNNNNN ............................. CCAACCCATTGCCCTTGTGACGAAACTTGGTG 794419 29 100.0 32 NNNNNNNNNN ............................. CCTGCGGAAGAAACCATCCGGCACATTATTCA 794480 29 100.0 32 NNNNNNNNNN ............................. TATTTCAAGCCCCGCAATGACGCGGGGCTTTC 794541 29 100.0 32 NNNNNNNNNN A............................ ACGATACATTGAGGCCAATGATGAGATTGCAC 794602 29 100.0 32 NNNNNNNNNN ............................. ATCGCGAATGCTCACCCGTTACACCAGCCTTG 794663 29 100.0 32 NNNNNNNNNN ............................. AATGGGACATTCCTAGCTGGGTGAGATCATCA 794724 29 100.0 32 NNNNNNNNNN ............................. AATCGCGCTCCAGCTGGGCGAAAGCGTACCCC 794785 29 100.0 32 NNNNNNNNNN ............................. CGGCTATCATCGCCTGGCGAATATCTTCCTGA 794846 29 100.0 32 NNNNNNNNNN ............................. CCGTTGCCATCTGGTCAAGCTTGGAGTATAGG 794907 29 100.0 32 NNNNNNNNNN ............................. CAAACCCTGGCCAAGGAAGCCCAGGTATCTGC 794968 29 100.0 32 NNNNNNNNNN ............................. ATGTGGTGTTTCAGCAGGTGGGTCGCGATGGT 795029 29 100.0 32 NNNNNNNNNN ............................. CTGGGTGGATCATGAGCCGTGAGGTGGCCAGT 795090 29 100.0 32 NNNNNNNNNN ................T............ GTCCAGTTGGTCTCCGACTGCTGTTAACCCGA 795151 29 100.0 32 NNNNNNNNNN ............................. AGTAGCGCGGGACAGTGCGGTAATCACGCCGG 795212 29 100.0 32 NNNNNNNNNN ............................. ACGGGCCAGTGCCCAACATGCACGACCCTTTA 795273 29 100.0 32 NNNNNNNNNN T............................ CTTTGGTCGCGATACACGCAAGATTGGAGTGA 795334 29 100.0 32 NNNNNNNNNN ............................. GTTTCTAGGAATTTGGCTTGCCCACCACTGGG 795395 29 100.0 32 NNNNNNNNNN ............................. CATCGGGAAGAAAACACGGTATAGCGTAGGCC 795456 29 100.0 32 NNNNNNNNNN ............................. ACGGAGATGTAGTAGAACCCCTGGAGGGCTAT 795517 29 100.0 32 NNNNNNNNNN ............................. CCGGTGGGGTCGCGGAGGAAGCCTTCTTTGGC 795578 29 100.0 32 NNNNNNNNNN ............................. CGTTCAGTCGTGCGATACGGCGGTCATAAATG 795639 29 100.0 32 NNNNNNNNNN ............................. GGCTAGATCCATTCGATTCCCGCATGTCCACA 795700 29 100.0 32 NNNNNNNNNN ............................. TCGGTGCGCCAGGTGCGGGCCTCGATGATGTT 795761 29 100.0 32 NNNNNNNNNN ............................. AGTTGCCCACACGGGTAAGCCAATCTCGAACA 795822 29 100.0 32 NNNNNNNNNN ............................. GGAAACACCGCCGTGCATGATCTCAACACAAT 795883 29 100.0 32 NNNNNNNNNN ............................. TTTGCCGGTCGCTGAGGTGAGTTTCGTTTCTC 795944 29 100.0 32 NNNNNNNNNN ............................. CAGACTGACGTACGGATTAAGGGTGGCGCGCT 796005 29 100.0 32 NNNNNNNNNN ............................. GGCTACCTCGACGATGAGGGCAAGCAAGCCAT 796066 29 100.0 32 NNNNNNNNNN ............................. CCGAAACGCCAACCACAGTGCGGGTGGATTGA 796127 29 100.0 32 NNNNNNNNNN ............................. GTGAAGTTACCTGGTTTAAAGCATCCGATGTG 796188 29 100.0 32 NNNNNNNNNN T............................ ATTCATGGGGATACCGGATGGAGGGATGTCAC 796249 29 100.0 32 NNNNNNNNNN ............................. AGAGCGCGTGGCAAACCAAGGGGGAGATCATT 796310 29 100.0 32 NNNNNNNNNN ............................. TGGTCGGTGTGGTAAATGGTGCGCTGATTGCC 796371 29 100.0 32 NNNNNNNNNN ............................. GTGCCCCGTTGATGTATGCCCACGCTGTTGAG 796432 29 100.0 32 NNNNNNNNNN ............................. CCTGCAGGGCTAGAGAACGCTCTCTATAGGCT 796493 29 100.0 32 NNNNNNNNNN ............................. CTTCTCTTCAGCTTTCGCAATGGACTCAGCGC 796554 29 100.0 32 NNNNNNNNNN ............................. CTGATCAGGTTGTGAAGTTGGCTGCTATCGGT 796615 29 100.0 32 NNNNNNNNNN ............................. GATGCTCATGGTCTCGCCGATCGTGACATGAA 796676 29 100.0 32 NNNNNNNNNN ............................. GATGCTCATGGTCTCGCCGATCGTGACATGAA 796737 29 100.0 32 NNNNNNNNNN ............................. TCCAGGCCGCAAGTTATGAATAAGGGCGATCA 796798 29 100.0 32 NNNNNNNNNN ............................. TACCGAACACTGGATGTGCGGTTTAATAGCGT 796859 29 100.0 32 NNNNNNNNNN ............................. CCACGAAATACAGTTCGGACATGACAACCCAC 796920 29 100.0 32 NNNNNNNNNN ............................. GTGCACCGCGCTGAGGTTGCAGCAGCACAAGC 796981 29 100.0 32 NNNNNNNNNN ............................. CGATCCGCCGGTAGGTCTGCCAGCGTTTTCTA 797042 29 100.0 32 NNNNNNNNNN ............................. GCAGATGTTCACATGGACATGAGTACGGAAAC 797103 29 100.0 32 NNNNNNNNNN ............................. ATAACCGCACCCCCGCCCCACTGAGGCAGGAG 797164 29 100.0 32 NNNNNNNNNN ............................. GTTAAGGTGATGGACGCGATTGTGGATGCAAT 797225 29 100.0 32 NNNNNNNNNN ............................. TGTGCAACAACTGTGGTGAGGTCTATTGACCA 797286 29 100.0 32 NNNNNNNNNN ............................. TCCTTTTTAAGCACTTTGAGTCCCCTTAGCCA 797347 29 100.0 32 NNNNNNNNNN ............................. GCATCAAATGAATCATTGATAGGTGGGTATTT 797408 29 100.0 32 NNNNNNNNNN ............................. TTTGGCCCGGAGGTTGCTGAAACGTTCTGGGA 797469 29 100.0 32 NNNNNNNNNN ............................. ATATCATGTGCCAGGGCAAGCTGCTCCGGGGT 797530 29 100.0 32 NNNNNNNNNN ............................. GAAATCAATCCCGCCCGTCGTGGTGACACCTT 797591 29 100.0 32 NNNNNNNNNN ............................. TTCACCGGTGCCATCGCAGCCTGCTTCAACCC 797652 29 100.0 32 NNNNNNNNNN ............................. AGGTCGTAGGCCTCCGTGGAGGTTTTCGACAT 797713 29 100.0 32 NNNNNNNNNN ............................. AATCCGCAGCTTGTGCCAGCCACTCCGAAGCA 797774 29 100.0 32 NNNNNNNNNN ............................. TTGTTCGTCGGTGAGTTCGCCGGGTTCAGGTG 797835 29 100.0 32 NNNNNNNNNN ............................. CGCAATAACTCAGGTGCCATGGCCAGTGGGTT 797896 29 100.0 32 NNNNNNNNNN ............................. GGGGGCTGAGGAATAATGTTCACTCTTGAAGA 797957 29 100.0 32 NNNNNNNNNN ............................. AACCAAATCTTGCCGAACCTGTTGGTTATAGC 798018 29 100.0 32 NNNNNNNNNN ............................. GCTATGCGTTTCCCTGACGGCACCTATTTGGA 798079 29 100.0 32 NNNNNNNNNN ............................. CAGATGGCACACCAATCTGGGACGCGCCACTA 798140 29 100.0 32 NNNNNNNNNN ............................. AGGATTACGCGACGGCGGTGGAGGAACATGCC 798201 29 100.0 32 NNNNNNNNNN ............................. AAGTGGTGGCCAGTTCCTCGACGGTGATTGCG 798262 29 100.0 32 NNNNNNNNNN ............................. TGAACGCCACCTGAATTCCGGTGGCGATTTTC 798323 29 100.0 32 NNNNNNNNNN ............................. CGAGCAGGGAAACCATTGCTCAATACATGGGA 798384 29 100.0 32 NNNNNNNNNN ............................. GGTGATGGGCTTCAAGCGTCCCGCGTGGGAGG 798445 29 100.0 32 NNNNNNNNNN ............................. CGCGACCAACGCTTCATACGCTGGTGGATCGA 798506 29 100.0 32 NNNNNNNNNN ............................. ATTGCGCGCTCGACGTCGGTGGTGCCGGTTTT 798567 29 100.0 32 NNNNNNNNNN ............................. ACATTCCCGTGAATGTGCTCTGAGTGTTATCC 798628 29 100.0 32 NNNNNNNNNN ............................. ACAGCCCCCAAACCGGCAAAGGTACTGTCACT 798689 29 100.0 32 NNNNNNNNNN ............................. GTCGAGTTCGCCACCGAAGCAGGCGACCGCGT 798750 29 100.0 32 NNNNNNNNNN ............................. CCCGATACGCGGAGCAATTCAGAGGCTCTGTA 798811 29 100.0 32 NNNNNNNNNN ............................. CCAGAAACCAGCACACAAGGAGAACTCACCGT 798872 29 100.0 32 NNNNNNNNNN ............................. GAAAGCGCTACGTCTTTCTCCTCAACCAGGTC 798933 29 100.0 32 NNNNNNNNNN ............................. GCCCTCTGCTAAAACTTCCACTCAATCTCCTA 798994 29 100.0 32 NNNNNNNNNN ............................. GCAACCTTGTGGAGGTCTACGAGGGTTCTGTA 799055 29 100.0 32 NNNNNNNNNN ............................. GGCTTGTGGACGAGTTTGTCTTCCAGGCCGTA 799116 29 100.0 32 NNNNNNNNNN ............................. CCCGGGTCATCAGTTTTCGCAGTGAGTATGTT 799177 29 100.0 32 NNNNNNNNNN ............................. TTCCTTGTTTCTCGTCAGTGTCGGCGTGCGTT 799238 29 100.0 32 NNNNNNNNNN ............................. CTTAGGCGAATGCTGCTTTGAGATCCGCAAGA 799299 29 100.0 32 NNNNNNNNNN ............................. AATTCGCGGGCGATAAGAATTTCGCCTTTACC 799360 29 100.0 32 NNNNNNNNNN ............................. CCACGACAGTGCCCGCAGCAGGAACATTTACA 799421 29 100.0 32 NNNNNNNNNN ............................. GGACTGCGCGTTCAACCTCGCTATTCAAATGA 799482 29 100.0 32 NNNNNNNNNN ............................. CGTAGCCCATGACTGCGATGTAGTGGTAGACC 799543 29 100.0 32 NNNNNNNNNN ............................. ACTCACTGACGTGTACACAGCCATGTACCAGC 799604 29 100.0 32 NNNNNNNNNN ............................. CGAAATCCACGAAATCAACCGCCTTGATTCCT 799665 29 100.0 32 NNNNNNNNNN C............................ AGCAGGAGTGATCATGGCAGATAAAGGTGATC 799726 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 112 29 32 GGAAATACCTCCGCGTGTGCGGAGAAGAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-10.30,-10.50] Score: 0/0.37 # Array degeneracy analysis suggestion: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [46.7-50.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [570,7050] Score: 0.18/0.18 # # Final direction: R [0.37,0.59 Confidence: LOW] >NC_009380 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1116408 30 93.3 36 CGGCTTCGAC --............................ GTGGGCGTGGGAGTCCCCGCTGCTCACCTTCCGGTT 1116474 30 100.0 35 CCTTCCGGTT .............................. CGAGCCCCGGTTGAGCGCGGTGTACCGGCTGTCGG 1116539 30 100.0 36 CGGCTGTCGG .............................. TGAAAGCATCGCTGAGAAGCTAGAATCAGGTGAAAC 1116605 30 100.0 36 CAGGTGAAAC .............................. ACCGGCGGGGGGCTCACTTACTGCTGCGCGCCTCGT 1116671 30 100.0 35 CGCGCCTCGT .............................. CCGTCCGAGAACGCCACGGTGACCGAACAGGATGC 1116736 30 100.0 36 AACAGGATGC .............................. GAGGTGACAGCGTGACGTGCAGGCGGGGAGTACCGT 1116802 30 100.0 39 GGAGTACCGT .............................. CCAGGAGCTGCGCGGCGAGCTGGGCGAGGTTCGGGCCGC 1116871 30 100.0 38 TTCGGGCCGC .............................. GTGGTCACCTCGGGCACCTCGCACGCCGCCCTGTACGT 1116939 30 100.0 36 CCCTGTACGT .............................. CGGTGCAGGTCAACGGCAGGGTGCCCATGCCGACGG 1117005 30 100.0 35 ATGCCGACGG .............................. TTTGCTGCACCAGTTGGAGACCGGCCGCACTCGGC 1117070 30 100.0 33 CGCACTCGGC .............................. TCGAGGCAGATGCCGACCACGTCATCGAGACTG 1117133 30 100.0 39 ATCGAGACTG .............................. CTGTGCCCTTGCCCTTTGCGCTCTTCCCGGTCCCACCGC 1117202 30 100.0 36 GTCCCACCGC .............................. CTGTGCCCGACGCCCGACCGTCCGGCGGGTACTGCC 1117268 30 100.0 39 GGGTACTGCC .............................. CTGTGCCCTTGCCCTTTGCGCTCTTCCCGGTCCCACCGC 1117337 30 100.0 37 GTCCCACCGC .............................. CCGGTTCTCCCGCGGACTGGGCAACCTCCGCTCCTAT 1117404 30 100.0 37 CCGCTCCTAT .............................. GGCCACCCCACACCCCCGGCCGGCGGATCTGGGAGAC 1117471 30 100.0 36 TCTGGGAGAC .............................. CGTGGAGCTACCGGTGGTGCTGCATGCCGCCGGGGT 1117537 30 100.0 38 CCGCCGGGGT .............................. GCCAAATCCGTCGATGGCGTTGGTGGCTTCGATAAACT 1117605 30 100.0 33 TCGATAAACT .............................. CGCATGATCCGGCTTTTCCGCCGCCGACTCCGC 1117668 30 100.0 38 CCGACTCCGC .............................. TTGCGTCTGGCGCGTCGACTGCGTGATCCAGCAGTCAG 1117736 30 100.0 37 CAGCAGTCAG .............................. TGCTTGGGTGCGGCCGGACCTGGGCACCGGGGACGGT 1117803 30 100.0 33 CGGGGACGGT .............................. CCCGCGCGTCGGAGGACACCGGCTCCTGCGAAC 1117866 30 100.0 39 TCCTGCGAAC .............................. CGCTTGCACGGCGTCGATGGCGGTGCCGGCGAGGTTGGT 1117935 30 100.0 38 CGAGGTTGGT .............................. CCGGAGATCGTCGGCCATCGGTTACTCCAGGTTCAGTT 1118003 30 100.0 AGGTTCAGTT .............................. CCGAACCTTA ========== ====== ====== ====== ========== ============================== 25 30 36 GTTGCGATCCCTCCAGGGGTGATGAGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [25.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [65,89] Score: 0/0.18 # # Final direction: R [0.37,1.05 Confidence: MEDIUM] >NC_009380 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2238029 28 96.4 33 CGTCCCCGGC .................A.......... GCCTCGGCCTTCACCGGGCAGCCGTCGCACGCC 2238090 28 100.0 33 GTCGCACGCC ............................ GTGGCCCGATGACGAGCGACCACTACACCCAGC 2238151 28 96.4 33 TACACCCAGC ................T........... GCACGTAGCACCGCCACGGCGGTGTCCGCCATG 2238212 28 100.0 33 GTCCGCCATG ............................ GCCTCGGCCTTCACCGGGCAGCCGTCGCACGCC 2238273 28 100.0 33 GTCGCACGCC ............................ CGCGCCGCGGCTGTCACCGGGTTCGACGGTGAC 2238334 28 96.4 33 CGACGGTGAC ................T........... CGCGCCGCGGCTGTCACCGGGTTCGACGGTGAC 2238395 28 96.4 33 CGACGGTGAC ................T........... TGGCTAATGTCCCCATGGGCGAGCAACGCCCAC 2238456 28 96.4 CAACGCCCAC ................T........... ACTTTGCGAC ========== ====== ====== ====== ========== ============================ 8 28 33 GGAGCACCCCCACGTGCGTGGGGAGGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-10.90,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [25.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [693,861] Score: 0/0.18 # # Final direction: R [0.37,0.68 Confidence: LOW] >NC_009381 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1592344 28 100.0 32 AAGCGTTGAC ............................ TTAAGTTCTTTTTGTCAGCATCTTTAATAAAT 1592404 28 100.0 32 TTTAATAAAT ............................ CTGAAATACAAATAAAATAAATCGTCGAACAT 1592464 28 100.0 33 CGTCGAACAT ............................ TTGGCAATCATGTTTGGCTGCGCTTGGTTAAAC 1592525 28 100.0 32 TTGGTTAAAC ............................ TGTCAGGCTGGGACTCTGATTTTTCAATTCGT 1592585 28 100.0 TTCAATTCGT ............................ GTAAGATAATA ========== ====== ====== ====== ========== ============================ 5 28 32 TTTCTAAGCTGCCTGTGCGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [41.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [96,496] Score: 0.18/0.18 # # Final direction: R [0,1.19 Confidence: HIGH] >NC_009381 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3033004 28 100.0 33 GCATCAGTCT ............................ TGTTCTGAGAACGCTGCATGTCATTGCCTGGGG 3033065 28 100.0 33 TTGCCTGGGG ............................ AGCAAAAATCTTAATTACATCTGATGATTTCGG 3033126 28 100.0 32 ATGATTTCGG ............................ AGTGACTAACACGTCACAAATGTCGCCGTTCT 3033186 28 100.0 32 TCGCCGTTCT ............................ CGGACGCGGTGAAAACTATCCTGCAACGATTC 3033246 28 100.0 32 GCAACGATTC ............................ TATGAGTGACAGCCGTTTTCACCACCGCCGTG 3033306 28 100.0 CACCGCCGTG ............................ AGTAAGATAAT ========== ====== ====== ====== ========== ============================ 6 28 32 TTTCTAAGCTGCCTGTGCGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [48.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [65,1316] Score: 0.18/0.18 # # Final direction: R [0,1.19 Confidence: HIGH] >NC_009381 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2121649 28 100.0 32 CTTTCATGAT ............................ GAAAAGGTAAGATGGGCAAGCTTCTAGTAGTT 2121709 28 96.4 32 TCTAGTAGTT ..................A......... ATTATCTGAATGGCATTTTCTTTGGCGCAGAT 2121769 28 100.0 32 TGGCGCAGAT ............................ TCGCCATTCCGTGAACCTGAGCGCGTTCGCGA 2121829 28 100.0 32 GCGTTCGCGA ............................ ATATTCTCGAGCGATAGCAATAGCCATTCCAC 2121889 28 100.0 34 GCCATTCCAC ............................ TTATCCGTGACCGACTCAAATACACGCTGGAACG 2121951 28 100.0 CGCTGGAACG ............................ AGTAAGATAA ========== ====== ====== ====== ========== ============================ 6 28 32 TTTCTAAGCTGCCTGTGCGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [421,339] Score: 0/0.18 # # Final direction: R [0,1.42 Confidence: HIGH] >NC_009434 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 4056654 32 100.0 36 TAAACCCGTG ................................ AACCCCAGCGCCGGCGAGGTCAGCGAGACGCGCCAC 4056722 32 100.0 34 GACGCGCCAC ................................ AACAGGGCCGGGCTTGCCCGCGCCAAGCTGGACG 4056788 32 100.0 35 AAGCTGGACG ................................ AACGCTACGCCGGCGGATATCGCGGCGGTGGTCAA 4056855 32 100.0 38 CGGTGGTCAA ................................ ACATTCCAAAATTTGAGGTAGCGACATGGCCCGTAAGC 4056925 32 100.0 34 GCCCGTAAGC ................................ CACTTCTCCCAATAAAAAGGGGCGCGGTTTGACC 4056991 32 100.0 34 CGGTTTGACC ................................ TGCTTTTGGAGGTGCCGCATGAACCCTCTCCAAC 4057057 32 100.0 34 CCTCTCCAAC ................................ ACCTGCTGCTCAACTCCTCCTCGCCCGTTCCGTT 4057123 32 100.0 34 CCGTTCCGTT ................................ CTGGCCGGTGACGGCGCCCTGGTAGATATCGACG 4057189 32 100.0 35 GATATCGACG ................................ TGGCATACGGTGTCGCCGGAGATCGTGCCGATCAT 4057256 32 100.0 34 TGCCGATCAT ................................ AAGAGCAAGTACGCCGACTTGGCTGAGATCCTGA 4057322 32 100.0 34 GAGATCCTGA ................................ AATAGTAGCCTTGTTGTTGACGGCATCCTCCGTC 4057388 32 100.0 34 ATCCTCCGTC ................................ AAGGCAAGCCGCCAGATCCTGGACGACTCGTCTG 4057454 32 100.0 34 GACTCGTCTG ................................ TTCTAGAGACTGTCGAAACCTACGAACTGGATGC 4057520 32 100.0 35 AACTGGATGC ................................ ACCTAACTCATGAAGCGCCGTATCGCGATGAAATG 4057587 32 100.0 34 CGATGAAATG ................................ ACCGAACTGGTGGCGGAGACGAAGTGTGAGACGG 4057653 32 100.0 34 TGTGAGACGG ................................ TTAGTCTCTTCCTCAACCAGCCCCATTCCACCGA 4057719 32 100.0 37 ATTCCACCGA ................................ TCCCATACGCCATGCGGCAACACCCCGCGCTGGCGCT 4057788 32 100.0 34 CGCTGGCGCT ................................ ATGGTGAAGTCGCGATGCAGTTTCGAGTGACACG 4057854 32 100.0 34 GAGTGACACG ................................ TGGCCGTCTCGCACAGCCTTTGCCAGCGCCTCGA 4057920 32 100.0 33 AGCGCCTCGA ................................ ATTTCGCCGGGGTCGCCCTTGAACTCGCTAGAC 4057985 32 100.0 34 CTCGCTAGAC ................................ AGGTCAGCCGCTTCGGTAATCCTGAACTCCGCCC 4058051 32 100.0 34 AACTCCGCCC ................................ TTTGATGGTGTTCAGGGTTTTGCCGTTGCCTTGC 4058117 32 100.0 33 GTTGCCTTGC ................................ AGCGCGTACAGGCCGCAGACGGCCGCCCCGATC 4058182 32 100.0 35 CGCCCCGATC ................................ ATCGACAACGGCACCATCCGCAGCACCGCGGCGCC 4058249 32 100.0 35 CCGCGGCGCC ................................ TGGATCGTCGACGCCGACGCGGTGCCGGCCGATCG 4058316 32 100.0 35 CGGCCGATCG ................................ TGGGCAGTGGACAAGCCCATGCACCCGTCCCTGGT 4058383 32 100.0 37 CGTCCCTGGT ................................ ATCGCGGCGAGCATCGACCAGGACAGCCGGATCCGCT 4058452 32 100.0 35 CGGATCCGCT ................................ CAGTAGGCCCTACCGTCCTTGATCCCTGCCACATA 4058519 32 100.0 35 CTGCCACATA ................................ GAGGCGTGGTGGGACAGGCAGCCTCACCGCGAGCA 4058586 32 100.0 35 ACCGCGAGCA ................................ CTGTGCCTCTGCATCTGCTTTCTCCGTTGCGGCCT 4058653 32 100.0 37 GTTGCGGCCT ................................ ATGGGATCACCGCTCGAAGGATGTGAGGCCCGACCAT 4058722 32 100.0 34 GCCCGACCAT ................................ CTCGAGTCGGGCACGCTGCTGGCGGTCTACTCGG 4058788 32 100.0 35 GTCTACTCGG ................................ AACGATAACCTGACTCGCATTGGTGAGGCCTCTAG 4058855 32 100.0 33 AGGCCTCTAG ................................ AGGATCGTATTCGCCAGGGCTCGCATGGCCTCC 4058920 32 100.0 33 CATGGCCTCC ................................ CTCTTGCGGTTGATTAAAAATGCGCCCCACTGC 4058985 32 100.0 34 GCCCCACTGC ................................ GTTCCGAGCAGAACGACATTGCCCGCGAAGCCAA 4059051 32 100.0 33 GCGAAGCCAA ................................ GATCTGTTCATCGCGCCAGGCGTCGCCGTGGTG 4059116 32 100.0 35 CGCCGTGGTG ................................ TAACCGCCCAGGGGTTGAAGCGCGCCGACGCGGAG 4059183 32 96.9 34 CGACGCGGAG .................A.............. CCCGCACCTCGCCCTTTTCCAGGGTGGCGCGCAC 4059249 32 100.0 34 TGGCGCGCAC ................................ TTCGAGAGTGGGCACCGTCGCGCCTCCTATGTGA 4059315 32 100.0 34 TCCTATGTGA ................................ GGGGTCCACGCGACGGTACGGCCGTTGGGATACA 4059381 32 96.9 33 TTGGGATACA .................A.............. CTTGTGGCTCTGTTGTTGGCGATCAGGGGGAGC 4059446 32 93.8 CAGGGGGAGC .........................A.A.... ACCTTAATGG ========== ====== ====== ====== ========== ================================ 43 32 34 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-10.30,-11.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [50.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [182,222] Score: 0/0.18 # # Final direction: F [5.55,0.37 Confidence: HIGH] >NC_009437 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2513322 29 100.0 36 NNNNNNNNNN ............................. TAAAGTTATTAATCCTCTTTCAGCCCACTTGTCGTA 2513387 29 100.0 38 NNNNNNNNNN ............................. TTGTTCCATTTCTTTGACAATCCGCTTGAATTCTTTTT 2513454 29 100.0 36 NNNNNNNNNN ............................. GAAGGAGCTTATACAATACAGCGAGGATATCTTAGC 2513519 29 100.0 36 NNNNNNNNNN ............................. CAAGGGCAAAGATTGCAATACCCAGACAGGGAAAGA 2513584 29 100.0 36 NNNNNNNNNN ............................. GAACTGAAGAGTTCCCTTTTGTTTTTGATGAAGCAA 2513649 29 100.0 36 NNNNNNNNNN ............................. TCTTGAATCTGAGATTGTGATAGTAACAAATCAGGA 2513714 29 100.0 36 NNNNNNNNNN ............................. AAGTAATGATAAATGTTGTCTTTAAGCACCTTTAAC 2513779 29 100.0 37 NNNNNNNNNN ............................. GAGATTGCAGAACTTAAAGCAATGATGACAAAGCAAA 2513845 29 100.0 36 NNNNNNNNNN ............................. AGACGGAGGTTGTATCCTGTCCGTCGGATACCCTTC 2513910 29 100.0 36 NNNNNNNNNN ............................. CAACGCCCTTCCTCACATGCCTTATAATATCTTTTA 2513975 29 100.0 36 NNNNNNNNNN ............................. TTTGATTTGATGTTGAAATAGTTGAACATTTTTAAG 2514040 29 100.0 36 NNNNNNNNNN ............................. TGCAGAGCAGCAACTAAGTTTTGATTTTCAAGAAAA 2514105 29 100.0 36 NNNNNNNNNN ............................. CTGCTGCTGCTCCATCCTCGAATGTTGTAATTGCAA 2514170 29 100.0 37 NNNNNNNNNN ............................. TTTCTTTGCTGACTAATAATTTGTATTTACTTGAAGT 2514236 29 100.0 35 NNNNNNNNNN ............................. TATGCAGCCTCTTGCATAGCTGCATCCATCAACTT 2514300 29 100.0 37 NNNNNNNNNN ............................. GAATTACAAACTCTATTGCTTTTGAAGGAACTTACGA 2514366 29 100.0 35 NNNNNNNNNN ............................. TTCCATTTCTTTGACAATCCGCTTGAATCCTTTTT 2514430 29 100.0 36 NNNNNNNNNN ............................. TTCAACAAGCATTTCAATAATTAATTCATTCACGGC 2514495 29 100.0 36 NNNNNNNNNN ............................. TCGCTGTGTAATGCGTATCTCAAAGCATCCATGCAG 2514560 29 100.0 36 NNNNNNNNNN ............................. GTAGATTGGATAATCAATGAAGGTGTGGAATATCCG 2514625 29 100.0 38 NNNNNNNNNN ............................. CAAAACTGCAATTGACACACTTAATGACATTGCAAAAA 2514692 29 100.0 39 NNNNNNNNNN ............................. CAGCAGTGAATAAATCTCCGCCTGCTCTTTATCATCCTG 2514760 29 100.0 37 NNNNNNNNNN ............................. AGGTAAAGCTGTCTTCACCAAGATATTGCTCGATAAT 2514826 29 100.0 38 NNNNNNNNNN ............................. TTGATGAGAAAGTGCATGTGGTTAGTACACTACCAGAG 2514893 29 100.0 36 NNNNNNNNNN ............................. TAAGTTGCGAGGAACGTTCGTCTGCAGGGTATATGA 2514958 29 100.0 36 NNNNNNNNNN ............................. CTGCTACCGAAATCGCCAAGTTTTGCTGTTGCAGCT 2515023 29 100.0 36 NNNNNNNNNN ............................. ACCAGAGTACATTGAGTTTATCAAGAAGACATACAC 2515088 29 100.0 36 NNNNNNNNNN ............................. CTGGCTAAATTGAGCATGTTAGATAGCAATATCTAC 2515153 29 100.0 38 NNNNNNNNNN ............................. CCTTCGGGCTGCGGAACGCTAAGCTTGCTTCTTGCCGA 2515220 29 100.0 36 NNNNNNNNNN ............................. ATCAGAGAACTACATATAGAGAAATCGACCTTTTAT 2515285 29 100.0 38 NNNNNNNNNN ............................. GTGTGTTGGCATTGAAATGAACTGGGAAGATTACAGAA 2515352 29 100.0 36 NNNNNNNNNN ............................. GAACGAAGAAAAAATTGAAATATCTTTCTTGCGTGA 2515417 29 100.0 38 NNNNNNNNNN ............................. CCCAGCACCGGGCTGCCCAGAAAGCTAAGATGTGAGGG 2515484 29 100.0 38 NNNNNNNNNN ............................. CCACTGCACCGTTTACTTGGGTATCGAACAATTTAAAT 2515551 29 100.0 36 NNNNNNNNNN ............................. ACTCCACATGACTATCATCCCACGAAACAAAACACG 2515616 29 100.0 37 NNNNNNNNNN ............................. TGTGCCGTCTGGCATCGCATATACACATATAAGATCA 2515682 29 100.0 39 NNNNNNNNNN ............................. GGATAGTAGTCACACAAGAGCTTGGGCGACAGTTTGAAC 2515750 29 100.0 37 NNNNNNNNNN ............................. AAAAGTGAAGCTGTAGCGTTTTTGATGAAACATTTTA 2515816 29 100.0 35 NNNNNNNNNN ............................. TTTGGAACATGATAAAGAGCATCATTACAACAACA 2515880 29 100.0 38 NNNNNNNNNN ............................. CGATGATAACGTTCAGCAAGAAGCAGAAGGAGTTTGCA 2515947 29 100.0 36 NNNNNNNNNN ............................. TGACCCAAGCAGAGTAACTACCCCCATTCATCTTAT 2516012 29 100.0 36 NNNNNNNNNN ............................. ATATTTCAATATGTCCTGTTCCGTCCAAAATCCCAG 2516077 29 100.0 35 NNNNNNNNNN ............................. TGGTAATGCTGAAGAGTTTTTAAACAAATCACTCA 2516141 29 100.0 36 NNNNNNNNNN ............................. GTATACAACGAGGACTGAAACATATTATAAAGAAGA 2516206 29 100.0 36 NNNNNNNNNN ............................. CTATCCTGTGGAGTCGAGCTTTGGCTTGTTCGTAAT 2516271 29 100.0 37 NNNNNNNNNN ............................. TTTCCTTGAGCTTTTGAAAGAGTTCTTTTTTGCTTTC 2516337 29 100.0 36 NNNNNNNNNN ............................. CCATGATTTTCTTTGCTATCTCTTCTTTCTTTTGTA 2516402 29 100.0 37 NNNNNNNNNN ............................. TTAGTGAATATTACCAAGCAATACTTATAACAAAGTA 2516468 29 100.0 36 NNNNNNNNNN ............................. GTTAAGTGTTCAACAAATAATTTACAAAACGTTAGA 2516533 29 100.0 35 NNNNNNNNNN ............................. CTTGCATTGATTTGAAAATACCCAGAAAAATCCAA 2516597 29 100.0 35 NNNNNNNNNN ............................. TACTTTTGTAGCGTTAAAACTAACCATCAAGTTTT 2516661 29 100.0 37 NNNNNNNNNN ............................. CAACCTTGAGATAGTTTTTCATCTCGCTAAGAGTTAC 2516727 29 100.0 37 NNNNNNNNNN ............................. CAAATAGGGAACTCTGGGATACTCTTGCTACTTCAAT 2516793 29 100.0 38 NNNNNNNNNN ............................. CTAAAGCTAAAAGCATTTGTGAATATTTAACCAAATCT 2516860 29 100.0 35 NNNNNNNNNN ............................. TAATTTTGAACTGGCACAAAAGGTTAAGCACATTA 2516924 29 100.0 36 NNNNNNNNNN ............................. CGGCACAGCGTATGTTGTCAAAGAGTATTATCACGA 2516989 29 100.0 36 NNNNNNNNNN ............................. AATCCATAGTCAGCAAGCTGTGTTATTGTTCTTGTT 2517054 29 100.0 37 NNNNNNNNNN ............................. AATCAGAGAACTACATATAGAGAAATCGACCTTTTAT 2517120 29 100.0 38 NNNNNNNNNN ............................. CCAGCGGTATGTATCCAAGCACATCTTGGGTCTGTGGT 2517187 29 100.0 36 NNNNNNNNNN ............................. AGCAAGATAAAATCTGAATAAATAATTACTACGATA 2517252 29 100.0 37 NNNNNNNNNN ............................. ATATGAGGCTTGTGGTTGATATCGCTAAGCGTTATAA 2517318 29 100.0 36 NNNNNNNNNN ............................. CAATAGCTGGTTATCAATATACAGTTGGTGGTGTAA 2517383 29 100.0 36 NNNNNNNNNN ............................. TTGCTCTTTTTTCTTTCTCTCTATCTCTTCAAGTTT 2517448 29 100.0 37 NNNNNNNNNN ............................. TGATGCCAGCTAATATGATGCCGTTGGCAACAATGAA 2517514 29 100.0 35 NNNNNNNNNN ............................. GCGCCGTGCTTGCTATTGTGTCCCAAGTGTTTTGC 2517578 29 100.0 36 NNNNNNNNNN ............................. GGTCTGCTTTTATTCCGGCGTTGCCCAAGATAGCCA 2517643 29 100.0 36 NNNNNNNNNN ............................. CGTCGGTAATCTGTATGCCTAGTTGCTTCAACATTT 2517708 29 100.0 37 NNNNNNNNNN ............................. CGAGGCATTAGCCGCACTTGCCAGCACGTCCGCAATG 2517774 29 100.0 36 NNNNNNNNNN ............................. TGGTTGTCCATTATCCTTGGTGCCAGTATCACCCAT 2517839 29 100.0 38 NNNNNNNNNN ............................. CAGCATACCGGACATAGCCTCGGCGCCAAAAATCGTAG 2517906 29 100.0 36 NNNNNNNNNN ............................. TAAAAGGAGTGATTACTTTGGATTTGAACTATGAAC 2517971 29 100.0 36 NNNNNNNNNN ............................. ACTATTGACAAGGTCAGAGAAATAGCGAATTACTTT 2518036 29 100.0 34 NNNNNNNNNN ............................. TATGCCCCGATATAAAGGTGAGCCTACAAGTATG 2518099 29 100.0 35 NNNNNNNNNN ............................. GCAGTTTACGGTAGGTATGGCGGGCTTCGAAGGCG 2518163 29 100.0 37 NNNNNNNNNN ............................. CAACATATTCCCTACCGTTGTAAACAACCCTATCATC 2518229 29 100.0 37 NNNNNNNNNN ............................. CATACCAGCAAGGTATTTGACAGGACAACTAATTTCA 2518295 29 100.0 38 NNNNNNNNNN ............................. CTCTGAACTTGCGTTGTCGTCACCAGCTGGCTGCCCGC 2518362 29 100.0 35 NNNNNNNNNN ............................. CTTGAAAGAGAATTAAACAAAACAATAGACTACAA 2518426 29 100.0 35 NNNNNNNNNN ............................. GATAAAGGCAATGAATGCAATGCTTGGTGGAAAAG 2518490 29 100.0 39 NNNNNNNNNN ............................. TGTCGTCCTTGAAAGGTAACCAAGACTCTCGATATAAAT 2518558 29 100.0 36 NNNNNNNNNN ............................. TCTCACCTCAGGGTCTCTGGGCACTTGCTGCAAGTT 2518623 29 100.0 38 NNNNNNNNNN ............................. TAATACGCAAGAGTGTTTATAAGCTTTATGACAGCTAT 2518690 29 100.0 36 NNNNNNNNNN ............................. TTGTAGATGCAGAAAATAAAAAAGTATATCTGCAAA 2518755 29 100.0 37 NNNNNNNNNN ............................. AACCGTTTATGCCGCGAAAGCCCTTGACTTGGTGGAA 2518821 29 100.0 37 NNNNNNNNNN ............................. CACGGGTCAAATCTTAAGTTTTACAGATACAATATAT 2518887 29 100.0 36 NNNNNNNNNN ............................. TTTCACATCACTACCCATGAATTCGAAATCAAACTT 2518952 29 100.0 38 NNNNNNNNNN ............................. GGCAATATTATGCAAGCTGTTGCGACCATTGCAATGCT 2519019 29 100.0 34 NNNNNNNNNN ............................. TTGCCTCCTCCAACGTCACCGGCTCCACCAGCGG 2519082 29 100.0 36 NNNNNNNNNN ............................. CTGTGCCCGGATATACTCAAAGCCTCTGCTGTACCC 2519147 29 100.0 37 NNNNNNNNNN ............................. GAAGAATGGCAAAAGGACAAAAAGTAGTAGGATATGA 2519213 29 100.0 37 NNNNNNNNNN ............................. TAACTGCCCATATAGTGCCAAATATTGCTAATCCTAT 2519279 29 100.0 38 NNNNNNNNNN ............................. CTGAAAGAGAAGGGTGGCGAAGGGCGGCTGTGTATAAC 2519346 29 100.0 37 NNNNNNNNNN ............................. TGCGAAATAAATATGTCTCTGACGAGACATTGTCAAC 2519412 29 100.0 36 NNNNNNNNNN ............................. CAATACTAAAGGAAACTGCCTTTTGAACGTAGTAAT 2519477 29 100.0 38 NNNNNNNNNN ............................. TTGGTGATGTTAGTTGATGGTAAAGAATCTAAAAATAA 2519544 29 100.0 37 NNNNNNNNNN ............................. TATTTAGGGGTGGTGGCAAGTATTTCCCACTTGAGCA 2519610 29 100.0 37 NNNNNNNNNN ............................. TTGTAACAGGGCTCACAGATTTATATGCTGTGAGGAT 2519676 29 100.0 36 NNNNNNNNNN ............................. CAAGGAATAGTGTAAGTTGCCGATTCGAGAACCTGA 2519741 29 100.0 37 NNNNNNNNNN ............................. TCTTTGAGCCGTGATGGTTTACGTATAAAACTTTCTT 2519807 29 100.0 37 NNNNNNNNNN ............................. TGATAGATAGCTTAAAAATTAATGATAGCTTAAAATT 2519873 29 100.0 37 NNNNNNNNNN ............................. GCAGGATAGAAAAGAAAAAGAGTTATATGTACCAGAA 2519939 29 100.0 38 NNNNNNNNNN ............................. AGCTTTTTGGAACGACTAATCCAGATAGCCCTTATCAT 2520006 29 100.0 1 NNNNNNNNNN .............TCTCAAT.T.CCTTTG NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 103 29 36 GTTTACATCCCTCATAGTTCAGATAAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.07%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [164,554] Score: 0.18/0.18 # # Final direction: F [0.41,0.18 Confidence: MEDIUM] >NC_009437 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2522062 29 100.0 38 TTGGTCATCA ............................. TAACGCAGACACGGCAACAAAAGAAAAAGCGTTGATAA 2522129 29 100.0 38 GCGTTGATAA ............................. TAAACATTACAGGCTTTAAGGACCGATTAGGTCGCAAT 2522196 29 100.0 38 AGGTCGCAAT ............................. CCGTCGTCGTCAACAACAAACTCGAAAGACAAAAGTTG 2522263 29 100.0 37 ACAAAAGTTG ............................. CATAGATTTTGATATCACCATTTTCGGTGAGCACAAC 2522329 29 100.0 37 TGAGCACAAC ............................. TAGCATTGTATCGTTGTAAGCGTTCTAATTCCCCTTC 2522395 29 100.0 36 ATTCCCCTTC ............................. CAGAACCCAGAACAGGCAGGTAATGAATAATGACAT 2522460 29 100.0 38 ATAATGACAT ............................. TGCCAAACAAGGTTGACCAGCAGGTAATTGATGAGTTT 2522527 29 100.0 36 TGATGAGTTT ............................. GGCTAATTGCATGTTCAATAAGTACTTTTTGCCCTG 2522592 29 100.0 38 TTTTGCCCTG ............................. CATCACCTCTGGGCTACATGTCCCTCGGGCACTGGCTG 2522659 29 100.0 38 GCACTGGCTG ............................. CAGAAAGGAGGGTAGCGGTTACATAATAGTAGTTTAGT 2522726 29 100.0 39 GTAGTTTAGT ............................. CGAGATGGGCTTGCCATTAACCTTAGCCGACCGCATCTT 2522794 29 100.0 38 ACCGCATCTT ............................. CAACTCCTTCAGTAATAAGTGTGTCGCCTTTGTAGAGT 2522861 29 100.0 36 TTTGTAGAGT ............................. TCGCAAAGCATCCATACAATGGTCGGCTACTTTTAA 2522926 29 100.0 37 CTACTTTTAA ............................. ACGAAGCGATGAAGCTCATCGTGTGTTCACATGAGCT 2522992 29 100.0 38 CACATGAGCT ............................. TCGTGAGGCCGTGAAACAAGCGAGCTTTCGTAATGCGC 2523059 29 100.0 37 CGTAATGCGC ............................. GCGGGTCAAGACCCTGGCGGAAGCGTAGAGGCCGAAA 2523125 29 100.0 37 GAGGCCGAAA ............................. CTGGAAGCTGTCTACTGGGCGGCCCCAAAGTTACCGC 2523191 29 100.0 38 AAGTTACCGC ............................. GGCGCGGAAGCGGGGCAGACGATGCTCACCCTGATAAA 2523258 29 100.0 38 CCCTGATAAA ............................. CTGCGTACGCGGCATTCCCCTTGATGTTATCGCCCAGG 2523325 29 100.0 37 ATCGCCCAGG ............................. CATGAAAATCCTTGCAGCTCCCGACCTCCACTGCTTC 2523391 29 100.0 37 CCACTGCTTC ............................. GCCCTGGACAAATTCGGCACCCCCTTAGTGGTAGCTG 2523457 29 100.0 37 GTGGTAGCTG ............................. AAGGTCAGCGATTATTGGGAAATTAAACATAATCCGA 2523523 29 100.0 38 CATAATCCGA ............................. ATTAGCTGAGAGTGGCACAGCACTAAGAAGGTTGATGA 2523590 29 100.0 36 AGGTTGATGA ............................. TGCAACGTGCAACTTGACGCTGTATGTTTACAATGT 2523655 29 100.0 36 TTTACAATGT ............................. GCTGGTGTTGCCGCTGCTGGGTTGCATATTTTACCT 2523720 29 100.0 37 TATTTTACCT ............................. TACGATTTGCCTTATGCGATAGTGCAACACGAGAGAC 2523786 29 100.0 36 CACGAGAGAC ............................. TAGAAGCTTCTACCTGCGAAAGCGTATACTTGGACC 2523851 29 100.0 37 TACTTGGACC ............................. GTGCCAGTTTTGGCTTTTCTAATTACACATTTAAAAC 2523917 29 100.0 37 CATTTAAAAC ............................. CAAAAAAAATAAGCTCAGCTATTGCTGAGCAACTATA 2523983 29 100.0 37 AGCAACTATA ............................. ACCGAGCGATACAAAGTCGGCAGCTTGTACATTTTTA 2524049 29 100.0 37 TACATTTTTA ............................. TACCGGGAACTGGTGAGAAGCCAACCTTGTTAAAACC 2524115 29 100.0 36 TGTTAAAACC ............................. CTGGTCATTCAGGGTAGAATATCACAATTTGGATAC 2524180 29 100.0 36 ATTTGGATAC ............................. TTATTTAGAAAAGGCTATTGTGATAAATCAATATGG 2524245 29 100.0 37 ATCAATATGG ............................. CTTTGCTATTTCCTTTGATTATTCTATAAACTTGTGC 2524311 29 96.6 36 AAACTTGTGC ..........T.................. GTTATTTAGAGACACAGCAAAATTTCTTGAGAAAAA 2524376 29 96.6 36 TTGAGAAAAA ..........T.................. ATATATGAAAAGCAGAAAAGAGATATATTGAATGCA 2524441 29 96.6 38 ATTGAATGCA ..........T.................. GTTTCTTCTATTGCTTTTCTCAGTTCATACGGTATATA 2524508 29 96.6 36 ACGGTATATA ..........T.................. TGATGATTATTACCAACAACATACAGATATAAAAAA 2524573 29 96.6 ATATAAAAAA ..........T.................. CCACTTTTA ========== ====== ====== ====== ========== ============================= 39 29 37 GTTTACATCCCTCATAGTTCAGATAAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.07%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [190,728] Score: 0.18/0.18 # # Final direction: R [0,0.18 Confidence: MEDIUM] >NC_009437 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 344075 29 100.0 37 ATAAAAGTGG ............................. ATAGAGGTACCAGGACAAGCTTGGCTCGAAGGAGAAG 344141 29 100.0 38 GAAGGAGAAG ............................. TTCGACATCTCAGAAGATTACGGAGCTGGAGAAAATCC 344208 29 100.0 36 GAGAAAATCC ............................. CACTTTTTATCTTTCTATAATCCGCTTCTTGCATGT 344273 29 100.0 37 TCTTGCATGT ............................. AGATTTGAGACAGATCCAGGTGAGCAAGCGCAAGTTG 344339 29 100.0 37 GCGCAAGTTG ............................. GAAAGCTTTTGGGCGATGCTTTTATCGAGGTTGTCAA 344405 29 100.0 38 AGGTTGTCAA ............................. ACTGCATCTGTTACCTTGAATTTATTATGCTCTATAAA 344472 29 100.0 37 GCTCTATAAA ............................. TGTGAAAGCAATTGAGCAGACGTTTGGGGCTGGACAA 344538 29 100.0 35 GGCTGGACAA ............................. ATTCCTGAGTACACAACTCCTAAAACCTTAATGGC 344602 29 100.0 36 CCTTAATGGC ............................. TATGAGTATAGACGCAGTGTAATAAAGTCAAAAATT 344667 29 100.0 38 GTCAAAAATT ............................. TTCGGCAAAAACAGCATTCATGACATCTTATGCAATGA 344734 29 100.0 37 TATGCAATGA ............................. TTTTGCAAGGGATAGATACGACAGTGCATATTATAAG 344800 29 100.0 36 ATATTATAAG ............................. GGATATGGGTGTATTCGATTTTACTTACAAGCTCGG 344865 29 100.0 37 ACAAGCTCGG ............................. AGTAGATAGTCTGTTGTAACAGAAAAGTAATTCGCTA 344931 29 100.0 38 TAATTCGCTA ............................. TGGGCTGTGGCCCGAATGATACTCAACCCCAACTGTCC 344998 29 100.0 38 CCAACTGTCC ............................. CTTTCTTTCTCTTTTCTATTTCTTCAAGCTTAGGTCGC 345065 29 100.0 35 CTTAGGTCGC ............................. CTTCGCATTGTGCTTGCTTAACCTCTTCTGGAACA 345129 29 100.0 37 TTCTGGAACA ............................. GCGCTTAGCCCGGGTAGTGGTAGTTCACCTTTTTCTG 345195 29 100.0 35 CCTTTTTCTG ............................. CTGCCCAAGGGGTGGCGGGCCGGCGGAGTAGATTG 345259 29 100.0 37 GAGTAGATTG ............................. GTGGTTTAACAATGCTATCAACAACGTGAAGCAGGCC 345325 29 100.0 37 GAAGCAGGCC ............................. TGCAAACTATCTGTTATTGCCATTGCAACAATTTCGA 345391 29 100.0 37 ACAATTTCGA ............................. CTTTGAAACTTGCCCAGGTAATAATTACCTGCTTTAA 345457 29 100.0 39 CCTGCTTTAA ............................. TTGCTGCAAGTCATAATCAGACTCCTTGATGTCGCCCCA 345525 29 100.0 36 TGTCGCCCCA ............................. TTAAGCCTTGTTAGCAGTAATTACAACCAAAGCCTC 345590 29 100.0 35 CCAAAGCCTC ............................. AGCTTTGCACAGCTGCACACAAGAGCAATTGAGGT 345654 29 100.0 37 CAATTGAGGT ............................. GTGATTTGGGATAGTCTTAAAAGTTTAGTAAGAATAT 345720 29 100.0 36 GTAAGAATAT ............................. TTCCACTTTCAGCTAAACCGCTTTTAAGCTGTCCAA 345785 29 100.0 38 AGCTGTCCAA ............................. CATCAATCAGCTGATAATTCAAAGCAAAATTGATGTGA 345852 29 100.0 37 ATTGATGTGA ............................. TTCGCAGTTTTTGAAACGATACATAGCAATAGCTCTA 345918 29 100.0 37 AATAGCTCTA ............................. TTATTACTCACCTTCCTTTATGATTTCAAAATTGCAA 345984 29 100.0 38 AAAATTGCAA ............................. TTTTCATTGCTGGGTCTAATCTCATTCTGATTCTGTTT 346051 29 100.0 36 GATTCTGTTT ............................. TTTATCGGGTAAGAGATAATCTCGTTGGTATATACA 346116 29 100.0 37 GGTATATACA ............................. ATTACTACGTTCAAAAGGCAGTTTCCTTTAGTATTGT 346182 29 100.0 37 TTAGTATTGT ............................. TGTGCGAGACAGACTTGAAAGAGAAAAGCCTTTAGAA 346248 29 100.0 37 GCCTTTAGAA ............................. CAAGCTGGCTTGCCAATCTCAAAACCTTTTTCATTGC 346314 29 100.0 37 TTTTCATTGC ............................. ATTGTACCCGGTAACTAGTACTCTTCCGTCTTTCTCG 346380 29 100.0 37 GTCTTTCTCG ............................. TCTTTCAGAAGCAAAGAGAACTATTGGAGAAGTTTCA 346446 29 100.0 37 AGAAGTTTCA ............................. CGGTTAGAACCGTCGGGTCCAATCGGACGGTCATTAG 346512 29 100.0 38 CGGTCATTAG ............................. ATACAACTCAAGCAGTTTTTCCTGCCTTTCCCACTCTT 346579 29 100.0 36 TCCCACTCTT ............................. CCCCAGAGCTTTGATTTTAGTTCCGGGAAAGTTTGA 346644 29 100.0 36 GAAAGTTTGA ............................. GAAGAGGGACAGGCCAGGTTAGCTACAAGCCATACC 346709 29 100.0 36 AAGCCATACC ............................. AAATTCATCTATCGTTAAGCCCATCTTCAAACATTG 346774 29 100.0 35 TCAAACATTG ............................. ATTCTGTGTAAAGGATAGTGCCGTTTGCGTCGTAA 346838 29 100.0 37 TGCGTCGTAA ............................. AATCATAGGCTTTGATGAGACTTTTCCAGGAGCTACA 346904 29 100.0 37 AGGAGCTACA ............................. CCTAAATATTTTCCCTGAGCGGCTATTTGCCATCAGG 346970 29 100.0 35 TGCCATCAGG ............................. TTTCAGGAGGGCGTAGGCCTCTCTGCCCCTGCTGG 347034 29 100.0 38 CCCCTGCTGG ............................. CCGTGAGGTAAGGCAAGAGGTCGTCAAGTTTATAGATA 347101 29 100.0 37 TTTATAGATA ............................. TTATTTTTCGCAGCTTCCAGAACGGCCTGTGAGGAGA 347167 29 100.0 37 TGTGAGGAGA ............................. TATACATGTCGTACAGTTTTTGTGCGTCCAGCCCGGA 347233 29 100.0 38 CCAGCCCGGA ............................. GACAGTAAAGCTTGCAATTTCGCCACGATTGCAGACAA 347300 29 100.0 38 TTGCAGACAA ............................. GATGTGGCAGGGAATCTCCTCTACAAGTGATGAGAGCA 347367 29 100.0 36 GATGAGAGCA ............................. ATTGGAAGAAATCAACCGGCGGTTGACCTACACCCT 347432 29 100.0 38 CCTACACCCT ............................. ATTGATGTTCCAATTTCATATAATCCTCCGTATCAAGA 347499 29 100.0 37 CGTATCAAGA ............................. TTGCGACTTTTATTATTCCATGCTCAAAAAGTTTTGA 347565 29 100.0 39 AAAGTTTTGA ............................. ATTACATTATATCAAAGTGGGAGGGGAAATGCAATGTTA 347633 29 100.0 36 TGCAATGTTA ............................. AGAATAACAGCAGGGGAAACAGGAAGTAAAGAGCAA 347698 29 100.0 36 TAAAGAGCAA ............................. TCTTATTTTCTTTTGTTTGCTTTCCTGCAACAACTC 347763 29 100.0 36 GCAACAACTC ............................. GTATTGCTATCGAAAAAAAAACATATGAAAAATTAA 347828 29 100.0 36 GAAAAATTAA ............................. CTTTTCAGTTCAAATAATATCTCGTTCGCAAGGAAA 347893 29 100.0 CGCAAGGAAA ............................. TTGCAGCTTC ========== ====== ====== ====== ========== ============================= 59 29 36 GTCTTATCTGAACTATGAGGGATGTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.07%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [70.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [728,80] Score: 0.18/0.18 # # Final direction: F [0.45,0 Confidence: MEDIUM] >NC_009437 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 351757 29 100.0 36 GTTTTGAAGG ............................. CTTTTTCTTTTTCAAAGACCTTGCACACAAAAAATC 351822 29 100.0 37 ACAAAAAATC ............................. TGTGATATACCTTCACGTCTTCCTCGTATAAGTCATA 351888 29 100.0 37 ATAAGTCATA ............................. AATTCACATGCGAATAGAGGTCCATAGTGATTGAGAT 351954 29 100.0 37 TGATTGAGAT ............................. GAGACAAAATCAGCTTACAAATTCCCTCATCATGAGG 352020 29 100.0 38 CATCATGAGG ............................. AGCATCGATATTGCTTCTTTGAGCTGCTCAAATACCGA 352087 29 100.0 36 CAAATACCGA ............................. ATAGCTGCTCAAATACACTACGTGGGTATGTCGTAA 352152 29 100.0 36 TATGTCGTAA ............................. TTCTTTTAGCTCTTCAAAAATTTCTAATGTGTTCAT 352217 29 100.0 37 ATGTGTTCAT ............................. AGTGTTCATGATGCTATCAAAGCTTTAGCCGAGTCAA 352283 29 100.0 36 GCCGAGTCAA ............................. AAAAATCATAGGTGGGTTGAGAAAGCTCCAATTGTA 352348 29 100.0 36 TCCAATTGTA ............................. CACATAAGTGTTAGTTGGAAAAGCGTCGGCATAGGA 352413 29 100.0 36 CGGCATAGGA ............................. CTGGTTTTCTTTTCTTTATGTGTAATCATATCCTGC 352478 29 100.0 36 CATATCCTGC ............................. TAAGTAGTGGACTTGCTTTATATTTGCTTATGGCAG 352543 29 100.0 36 CTTATGGCAG ............................. TTTACTATGCATGAAAACAGATTTATATTTGAACAA 352608 29 100.0 36 ATTTGAACAA ............................. GATATCATGATTTTGCAAAAGATTGTTGCAAGGATT 352673 29 100.0 33 TGCAAGGATT ............................. GCTAATGCTGCTGCTGCATGTATACCATTGCGA 352735 29 100.0 37 ACCATTGCGA ............................. GGGCAAAGTAGTCAAACTTGCTGTAATGCTTTAGAAG 352801 29 100.0 37 GCTTTAGAAG ............................. ATTTTGAAATGGGCACTTACTAATTTGCAAGTTGAAA 352867 29 100.0 37 CAAGTTGAAA ............................. GCTGCAGCTGCATAGAGCAATAAACGCAAAACAGCTT 352933 29 100.0 36 AAAACAGCTT ............................. CTGTGCGGTGCGGCTGTGTTGATATGAGTGTTGAGG 352998 29 100.0 38 AGTGTTGAGG ............................. TGCTTTTATTCTTCTGTTTTGCTTCAAAAGCTGGTACA 353065 29 100.0 AGCTGGTACA ............................. CATAGAAAGGCGGACTTTTTATTACTGGAAGGATGAAG ========== ====== ====== ====== ========== ============================= 21 29 36 GTCTTATCTGAACTATGAGGGATGTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.07%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [160,190] Score: 0/0.18 # # Final direction: NA [0,0 Confidence: NA] >NC_009437 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 356504 29 100.0 37 ATATTGATGA ............................. TCAACTTTTCGGTTTCTCTTTCAGCTTGTTTGACTGC 356570 29 100.0 38 GTTTGACTGC ............................. ATTGGCAAAATAATTTGAAAAATATTATCAAAATAATA 356637 29 100.0 36 CAAAATAATA ............................. TTATAAAAAGTAGGAGGGTTTAGAATGGCAGTCTTT 356702 29 100.0 35 GGCAGTCTTT ............................. TTGAATGAATTTAGCGGTATTGCTGTAGCGACTAT 356766 29 100.0 37 TAGCGACTAT ............................. AAGAAAGATAAAAAAGAAATGAAAGTTTGGACACTTG 356832 29 100.0 37 TGGACACTTG ............................. AAGAAAGATAAAAAAGAAATGAAAGTTTGGACACTTG 356898 29 100.0 37 TGGACACTTG ............................. AGTGCAAGTTTAAGGTTTTGCAAAGATGCTATTAAAC 356964 29 100.0 37 GCTATTAAAC ............................. AGTTACATTTTTTACGTCAGATGTTTTTTTAGTAATA 357030 29 100.0 36 TTTAGTAATA ............................. ATTTTTTTGCACGTGATGTTAGGACTTTATACAGGA 357095 29 100.0 37 TTATACAGGA ............................. CTGTAACCACCATTGAAATATTTATAATGTGCTAAAG 357161 29 100.0 39 TGTGCTAAAG ............................. CTGAACACAGCTAAATCCTGATGTTGTGTTTTTCAAGTA 357229 29 100.0 36 TTTTCAAGTA ............................. GCAAAGCTCAGATTAGAAACTATCTTATCAATCCAC 357294 29 100.0 36 ATCAATCCAC ............................. TGGGGAAGAAGAAGAAAAAGAAAAAGAAGAAGAAAA 357359 29 100.0 37 AAGAAGAAAA ............................. CAAACAACACAATGTCATTGCGCCACATGTAATAGGT 357425 29 100.0 36 TGTAATAGGT ............................. TGAAAACAAGAAAGATTTTAATATCAAGCCTCTGGA 357490 29 100.0 37 AGCCTCTGGA ............................. TGACTTCTGCGACTTGGGCAAGCGGATTCATCGGGAA 357556 29 100.0 39 TCATCGGGAA ............................. GGGTTTGACGAATTCCAAAACGCCCACAATACAAGAGAA 357624 29 100.0 35 TACAAGAGAA ............................. CCTCACAGAGTACCCCCCCTCAACAGACCCTTCTA 357688 29 100.0 36 GACCCTTCTA ............................. ATAATGCCAGTCTGTTGGGTTAGTGAGAGCATTTGC 357753 29 100.0 38 GAGCATTTGC ............................. CTCTCGATAAAGCTCAATCCAGTCCTCAAGCCTCAGTC 357820 29 100.0 38 AGCCTCAGTC ............................. TGTTTTGAATCGGCTTCGATTAAAGCATTTGCTTTAAG 357887 29 100.0 TTGCTTTAAG ............................. ATTTCCAATGTTGCACATATAGGCAAATATCCGCTGCTA ========== ====== ====== ====== ========== ============================= 22 29 36 GTCTTATCTGAACTATGAGGGATGTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.07%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [70.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [620,2094] Score: 0.18/0.18 # # Final direction: F [0.27,0.18 Confidence: LOW] >NC_009437 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 41743 32 90.6 33 AGAAAATAAA --..................C........... ATGAGTCACCTGACTTTCCCAGGTTGCAAATAG 41808 32 100.0 33 TTGCAAATAG ................................ TTAAAGTTAGATGAAGAGACAGCAAGAGCTTTC 41873 32 100.0 AAGAGCTTTC ................................ ACGTTGAAGA ========== ====== ====== ====== ========== ================================ 3 32 33 CTGTTTCAATCCCCAAAGGGGAGGCTACAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [10,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.50,-6.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [320,470] Score: 0/0.18 # # Final direction: R [0.74,4.91 Confidence: HIGH] >NC_009437 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 539731 29 100.0 38 GATTGAGCCG ............................. TTGCATAACTAGTGGGATCATTAATCGGCTCTATAATA 539798 29 100.0 36 CTCTATAATA ............................. GGCAATGTGGTCCAAGGTAGAAAGGCGGAAGCTGGG 539863 29 100.0 37 GGAAGCTGGG ............................. GTTTTAAAACTGTTAGTGCTTCTTCAATGTCTTTTAA 539929 29 100.0 35 TGTCTTTTAA ............................. CATGCCCAAAGAATTTATAAAGACATCAAAGAACA 539993 29 100.0 37 TCAAAGAACA ............................. CTTTGCCCCGCTACTGTAGTCCACGTGGGTGTTGCCT 540059 29 100.0 36 GGTGTTGCCT ............................. TCAACAAGTATTACATAGCCAGCTTCTCTTATTTCT 540124 29 100.0 36 TCTTATTTCT ............................. TCTATGATATAAACTCCATCTTCTTTAAGTCTCCAT 540189 29 100.0 37 AAGTCTCCAT ............................. TTTGGCCGATGGTGTAGCAACTTGGGCGGAGTTGGTG 540255 29 100.0 38 GGAGTTGGTG ............................. AAGAAGAGATAAAAGATTAAGCAGTAAGAACTCTTGTT 540322 29 100.0 39 AACTCTTGTT ............................. GAAGCAAGGGAAAATATAAGGCGTTCTTGGGAATACATG 540390 29 100.0 36 GGAATACATG ............................. TATTGACAATGTGCTAAAAGCTGTGCTGGATGCTTT 540455 29 100.0 37 TGGATGCTTT ............................. GAAGCAGTTAAAGTTTTACAAATGGCTTTATAGAGAG 540521 29 100.0 36 TTATAGAGAG ............................. ATTTTTTCAGCCATTCTCATTTTCAATCCCTCCTCC 540586 29 100.0 36 TCCCTCCTCC ............................. GACTGGTATTAGTGACAATGACTATATTGGTAGTTC 540651 29 100.0 37 TTGGTAGTTC ............................. GTTCTTGTCACAAATTGGACTGAGTTTGTAAATACTT 540717 29 100.0 35 GTAAATACTT ............................. AAGAGTCTATAAAATCAGATTTTCCAAACACTCCA 540781 29 100.0 36 AAACACTCCA ............................. TCTGACATGATTATTAATTACTCATGGTACGCTAAA 540846 29 100.0 40 GTACGCTAAA ............................. ATCGGTTGGGCAATTTTAGGTTTGACGACAGTTGCAACTT 540915 29 100.0 36 GTTGCAACTT ............................. ATGACGCCCTGTGCGTGAAGAATTAACTCTGTGCGG 540980 29 100.0 37 CTCTGTGCGG ............................. TATGGTTATTGGGCTTGGGTATGTTTTGTTGTAAGTA 541046 29 100.0 37 GTTGTAAGTA ............................. GTGCAATTTGATAAGCTTTCATGTTTTGCTCTGGGTT 541112 29 100.0 36 GCTCTGGGTT ............................. GTCTAACACGTCTGCAACAGAACAGAGCTGAAACGC 541177 29 100.0 36 GCTGAAACGC ............................. TGCTAAATACTGCTGTGCCAAGCTTTTGCAGCCTTC 541242 29 96.6 38 TGCAGCCTTC ..................A.......... TCTGGAGGAGCTCGTCCCTCACAAGATCGTATGCCTGG 541309 29 100.0 36 GTATGCCTGG ............................. AAGGGGGTGTTGGAAAAACTACTATTGCACTTGCAC 541374 29 93.1 GCACTTGCAC ..T......A................... GTAGCGAACA ========== ====== ====== ====== ========== ============================= 26 29 36 GTCTTATCTGAACTATGAGGGATGTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.07%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [620,290] Score: 0.18/0.18 # # Final direction: F [0.59,0.27 Confidence: MEDIUM] >NC_009437 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 60179 30 93.3 35 TTGATATCAA ........T.........G........... TATCAAAGCAAATGCAAATATGGGTGATGAGCAAA 60244 30 96.7 36 GATGAGCAAA T............................. TTGCTGTGTCAAACCACGTTCTTTTCTCAATTCTTT 60310 30 100.0 36 TCAATTCTTT .............................. AAGGAAGGCTAAAGGACTTACACAAGAAGAGATGGC 60376 30 100.0 36 AAGAGATGGC .............................. CTGCAAAAGCTTATTCGCTATCGTCTGTGCCATAGC 60442 30 100.0 36 GTGCCATAGC .............................. TGTTGCGCTTCGCCTGTAGAGCTCCAGCTTCGCCTG 60508 30 100.0 36 GCTTCGCCTG .............................. CCGTTGGGGTTGAAAAAATAAAAAAAAGGGAGGGTT 60574 30 100.0 35 AGGGAGGGTT .............................. CAGAAATAATAAGTACACTATAGCGGTTGATATCG 60639 30 100.0 36 GTTGATATCG .............................. AGAGGAAGATGAAAGCAATTTTGGTTGATGAAAACA 60705 30 100.0 37 GATGAAAACA .............................. CGTTATGATAGCGCTCTCTATAAAAGACAGTTGAAGA 60772 30 100.0 36 CAGTTGAAGA .............................. CGGTAAAAAGGGTGACAAAGAGATATTGCACATGCG 60838 30 100.0 36 TGCACATGCG .............................. AACAGTTCATACAACCACCCTCCATTTTTATTTTTT 60904 30 100.0 36 TTTATTTTTT .............................. TATGGAGTAGGGGCAAGCCCTACTCCTCTACCTCAA 60970 30 100.0 36 TCTACCTCAA .............................. CAGATATAATTTTTAAAATTTCTTCTCGCATTTCAT 61036 30 100.0 35 CGCATTTCAT .............................. TAACTCTTGTGTAATTTGTATCGCACCCCATCTGT 61101 30 100.0 36 CCCCATCTGT .............................. TGTAACTGCCTCACTTGTCTGTATGCCGTTTTTAGT 61167 30 100.0 36 CGTTTTTAGT .............................. AAGGAATACTTGAGCAGCATAGGGCTTGACCCAAGA 61233 30 100.0 36 TGACCCAAGA .............................. GCATTGTAGGAAGTGATGCAGGTACTAGCTTGAAGT 61299 30 100.0 36 AGCTTGAAGT .............................. TTTGACAGTGCTATCACAGCGTATCCTTCTGCTTGA 61365 30 100.0 37 TTCTGCTTGA .............................. TCAAAATCAACAAGAGCGATATGACGATTACTTGCAT 61432 30 100.0 36 TTACTTGCAT .............................. TTTCTTAGAAAGCTTTTTTTCCTTTCTGAAATTTTC 61498 30 100.0 37 TGAAATTTTC .............................. TTTGCCTTACCTGTTACTTCAGCTTTTTCTAAAAACT 61565 30 100.0 36 TCTAAAAACT .............................. TTATAAGAATTTCACAATCTAACAATCGCTTCAAGT 61631 30 100.0 36 CGCTTCAAGT .............................. CAGTCATCTTAAATCATCCTCCTCACTTTGATTTTC 61697 30 100.0 35 TTTGATTTTC .............................. TTTTTTAATCAACTCATCCAAATGATTGTATCCAA 61762 30 100.0 36 TTGTATCCAA .............................. CAGTCATCTTAAATCATCCTCCTCACTTTGATTTTC 61828 30 100.0 35 TTTGATTTTC .............................. TTTTTTAATCAACTCATCCAAATGATTGTATCCAA 61893 30 100.0 36 TTGTATCCAA .............................. TGACGTTGAATTTGATATTTTCTTTAATAAGAAAGA 61959 30 100.0 36 ATAAGAAAGA .............................. ATAGCACTGCCCAGAGTCCCTGACTCATTGCAAGTT 62025 30 100.0 ATTGCAAGTT .............................. CCGTAGATGG ========== ====== ====== ====== ========== ============================== 29 30 35 GTTTCAATCCCCAAAGGGAAGGCTACAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.90,-5.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [198,345] Score: 0/0.18 # # Final direction: R [0,5.28 Confidence: HIGH] >NC_009438 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2076690 28 100.0 32 NNNNNNNNNN ............................ TCAACCAAATCATAAATTGCGCGACCACATTG 2076750 28 100.0 32 NNNNNNNNNN ............................ CTGCGCCTGCTGCAGTTTCAGCACCACCTATG 2076810 28 100.0 32 NNNNNNNNNN ............................ TATTGAGTTTGCATCAAGCACGGTATGGCGCT 2076870 28 100.0 32 NNNNNNNNNN ............................ TATCGCCCAGCAAGACGCGCAAACCTATAACC 2076930 28 100.0 32 NNNNNNNNNN ............................ CGTTTCAGGCGCAAAGGCGGTCCACTCGTTAT 2076990 28 100.0 32 NNNNNNNNNN ............................ GTAACGATTTTCCCAATAAAACTCTAAAAGCC 2077050 28 100.0 32 NNNNNNNNNN ............................ GCTTACTGCGTGGCGGTGCCTATCCGCTAATG 2077110 28 100.0 32 NNNNNNNNNN ............................ TTTGTTTCAAATGTCGTAGCAGACTTTTGGTA 2077170 28 100.0 32 NNNNNNNNNN ............................ ATTCAGTGTGAGGCGTTGGAAATCTACGGCCT 2077230 28 100.0 32 NNNNNNNNNN ............................ GCAATGCTCGACTTTTTCAAAAGACATAAAAC 2077290 28 100.0 32 NNNNNNNNNN ............................ TTCTAGATGCGCGTCTAACTCTTGCAAGTAGC 2077350 28 100.0 32 NNNNNNNNNN ............................ TGATTTAGTCATTATCGCTGACACTGAGCGAG 2077410 28 100.0 32 NNNNNNNNNN ............................ CGTTATGTCTGTTACACTGTCAACTTCCAATA 2077470 28 100.0 32 NNNNNNNNNN ............................ ATGAATGCAAAATAGATCTTGGTGGCGCGACA 2077530 28 100.0 32 NNNNNNNNNN ............................ GTTAACAGTTGCTGGCAACGTCTTTTGCACCT 2077590 28 100.0 32 NNNNNNNNNN ............................ ATATCGAAGTCATCGGTTGGCAGCACTGTGTT 2077650 28 100.0 32 NNNNNNNNNN ............................ CTTGAGCATCGCTTCAACGTCTTGACTAATAT 2077710 28 100.0 32 NNNNNNNNNN ............................ GTATAGCAGCAGAGCAGGCAGAGGCAAAACGA 2077770 28 100.0 32 NNNNNNNNNN ............................ ACTTGTGTGGGCGATATTGGTTAGGCTTGTTG 2077830 28 100.0 32 NNNNNNNNNN ............................ GCAGGGACTCGCGCAAAGGCTGGCGTTATGAG 2077890 28 100.0 32 NNNNNNNNNN ............................ TAGTTGCTAACATCGTTGCTCGCCAGGGGATG 2077950 28 100.0 32 NNNNNNNNNN ............................ TTTATCATCAAATATTTCTTCTTGCTCGTACC 2078010 28 100.0 32 NNNNNNNNNN ............................ ATAGAGATAAGCTATAAAACTGGCATATCCAT 2078070 28 100.0 32 NNNNNNNNNN ............................ TGTAGATAAAACACTGCTTACAATAAAACTCA 2078130 28 100.0 32 NNNNNNNNNN ............................ ACGATTGTCTTTTGCTATTAATTAGGATGTAG 2078190 28 100.0 32 NNNNNNNNNN ............................ GTCTGCATTTGCTGCTATTGATGTTTCTGCCG 2078250 28 100.0 32 NNNNNNNNNN ............................ TGGCATGCATATATTGATATCAAAATTTGCAA 2078310 28 100.0 32 NNNNNNNNNN ............................ TACTTATTAATCCCGCATCAGGTCGAGCAAGC 2078370 28 100.0 32 NNNNNNNNNN ............................ TTCTTCTGTTGGTTTTGTTGTTTCTCCTATCT 2078430 28 100.0 32 NNNNNNNNNN ............................ TGTTACCGATGAAGTTTTTTTTCCTTCTTCTG 2078490 28 100.0 32 NNNNNNNNNN ............................ TTCTTCTTCTACTTTGCTTGATGATGCTGAAA 2078550 28 100.0 32 NNNNNNNNNN ............................ TTAGGATTAGCAAAATAAGTAAAATGTAAATT 2078610 28 100.0 32 NNNNNNNNNN ............................ TGTTAAGCTGTCTAATGCAAAGTCGTTTGGCG 2078670 28 100.0 32 NNNNNNNNNN ............................ TGTTGGATTTGGCTCTTGGTTCGGCGCTTCGG 2078730 28 100.0 33 NNNNNNNNNN ............................ CTTACAGTTGGTGATGCATATCGCGATCCACGC 2078791 28 100.0 32 NNNNNNNNNN ............................ TTCTCTTGAAGATAAAAAAGTTGATGATGAAC 2078851 28 100.0 32 NNNNNNNNNN ............................ TCTAATGTTGTAGGCTTCGATGTTATGAGCTA 2078911 28 100.0 33 NNNNNNNNNN ............................ CAGAAGAACAAGCGGAATGGTGGGATAGTGGCT 2078972 28 100.0 32 NNNNNNNNNN ............................ ATTTAACTACTCGGCTGAATAAACTAAACGAT 2079032 28 100.0 32 NNNNNNNNNN ............................ GAATACAGCTAGAATTTCGGCTGGCGTTATTT 2079092 28 100.0 32 NNNNNNNNNN ............................ TTAATAATCCCCAAAAAAAAGATAGCATTTTG 2079152 28 100.0 32 NNNNNNNNNN ............................ TTTAAGCAACAGATAAATGACGTGGCATTTGA 2079212 28 100.0 32 NNNNNNNNNN ............................ TAACATTATGCAGACCAATCAACGGGCGATTT 2079272 28 100.0 32 NNNNNNNNNN ............................ GAAATCATATTGAAGTGGTAAATCAGGCGTAG 2079332 28 100.0 32 NNNNNNNNNN ............................ ATAATTCTGTGAACCTTGGGGAGTTTTATAAT 2079392 28 100.0 32 NNNNNNNNNN ............................ TGCTTCTTGGAGTACAGATACTTGGAAGTTAA 2079452 28 100.0 32 NNNNNNNNNN ............................ TTTTATTTTAAGTACTGATGAACACCCTTTAA 2079512 28 100.0 32 NNNNNNNNNN ............................ GCTCGTCATTTCGCAGGTCTTTGTTCTTTTTC 2079572 28 100.0 32 NNNNNNNNNN ............................ TACAGTTAATATACCATCTTTATTAAATACAT 2079632 28 100.0 32 NNNNNNNNNN ............................ TTAGTTACAAAGTTACGGGCTGTCTGTCTAGT 2079692 28 100.0 32 NNNNNNNNNN ............................ GAAACCTGATACATAAGATTTCATGTATGGAT 2079752 28 100.0 32 NNNNNNNNNN ............................ ATAACCGCCAGTCTGGGCGTTTCCTATATCAA 2079812 28 100.0 32 NNNNNNNNNN ............................ TTAGATTTTTCAGGTTATCAAGACATAGATTT 2079872 28 100.0 32 NNNNNNNNNN ............................ TTCATTTGCCATAAGTGTAATTAAGGTTAATA 2079932 28 100.0 32 NNNNNNNNNN ............................ TTGTTTGAATATTTTCATATTAGTTTCCAAAT 2079992 28 100.0 32 NNNNNNNNNN ............................ AAACTCATGCTTTAGCTTATCACCAACCTTTA 2080052 28 100.0 32 NNNNNNNNNN ............................ AGATTCGCGTAACTGGTACGTAATACCGTTAA 2080112 28 100.0 32 NNNNNNNNNN ............................ TTCACTATTACACGAGGCCGCAATGACCACTA 2080172 28 100.0 32 NNNNNNNNNN ............................ TTATGCTTGCTTCTTTAATTCAGAAGAATGTG 2080232 28 100.0 32 NNNNNNNNNN ............................ TTTGCTCGCGTTTCTTTTCCTAGCAAAATCTC 2080292 28 100.0 32 NNNNNNNNNN ............................ TGACACGATAGTAAGTCGCGAGGATGCCGAGA 2080352 28 100.0 32 NNNNNNNNNN ............................ TGTAATACCTGAACCAGTAAGTGCCACGAAAC 2080412 28 100.0 32 NNNNNNNNNN ............................ TTTGCCCGCTGATTCGGGTATGTTCACGAAAT 2080472 28 100.0 32 NNNNNNNNNN ............................ TGTTGGTACGTTATTGATAAAGGCTAACAGAT 2080532 28 100.0 32 NNNNNNNNNN ............................ GATCACGGTATGCAAACCACCGTGCGCTAACA 2080592 28 100.0 32 NNNNNNNNNN ............................ TGTAGCTATTGAATTATAATTTCTAACATATT 2080652 28 100.0 32 NNNNNNNNNN ............................ AACTGCAGTTGCAGCTCTCGCGCTAGCTCTTG 2080712 28 100.0 32 NNNNNNNNNN ............................ TTAAACAACTGGACTGAAACAGCAAAAAAAGA 2080772 28 100.0 32 NNNNNNNNNN ............................ TTACAATAATCTCAGTAATGTTTTTCCATTTA 2080832 28 100.0 32 NNNNNNNNNN ............................ TGAACAGACAGAAGAAAACATCACAATGGATT 2080892 28 100.0 32 NNNNNNNNNN ..............G............. ATCTTTATTGGTTGGCAAGTGCCGTGAATTGG 2080952 28 100.0 32 NNNNNNNNNN ............................ TGATGTTTTGACTATCGAGAAAAGCTTTGCAA 2081012 28 100.0 32 NNNNNNNNNN ............................ TTCTTACGTAATCGGAGAAGCGCAAGAAATAT 2081072 28 100.0 32 NNNNNNNNNN ............................ TGACATTTCAGGGCAAGTTGTTAGCTTTCCAA 2081132 28 100.0 32 NNNNNNNNNN ............................ TGATTCTGTAAACATTGCCGCAGGACTTGGAG 2081192 28 100.0 33 NNNNNNNNNN ............................ CTTGGCATGTCTATGTTTACGATAACGTCTAGC 2081253 28 100.0 32 NNNNNNNNNN ............................ TTCTTTTGAAACCACCAAGTCGCAGCAATTCT 2081313 28 100.0 32 NNNNNNNNNN ............................ TAGAGTTAGGCATTAAATACTGCTTGTTTCCG 2081373 28 100.0 32 NNNNNNNNNN ............................ AATCATTGCATTGGCTCAGATAAACCGAGCTG 2081433 28 100.0 32 NNNNNNNNNN ............................ AATAAACTGATCTGTTACTAATCTTGATGGAT 2081493 28 100.0 32 NNNNNNNNNN ............................ GTAAATCTGAATAGCCGCACACGCGGCTTTAA 2081553 28 100.0 1 NNNNNNNNNN ..............T........GT.G. NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 82 28 32 GTTCACCGCCGCACAGGCGGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [7,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-10.10,-9.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [80.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [132,240] Score: 0/0.18 # # Final direction: F [1.42,0 Confidence: HIGH] >NC_009439 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 4137496 29 100.0 32 NNNNNNNNNN .TCGA........................ GGGTAGCCGTTGATCTTGGTCCAGCGCGGGTG 4137557 29 100.0 31 NNNNNNNNNN .......................A.CACG GTCAGGTCGTCGCGGTTCATCCACTGCGCGA 4137617 29 100.0 32 NNNNNNNNNN ............................. GCCTCAAACGCCGCCCGCTCCGCATCCATCTT 4137678 29 100.0 32 NNNNNNNNNN ............................. ATAAGGCGCTTGCCTAACGACTCATGAAAGAC 4137739 29 100.0 32 NNNNNNNNNN ............................. ATCGTTCACAGCAACAGCAGGTTCGGTTGCCA 4137800 29 100.0 32 NNNNNNNNNN ............................. GCAGGAACGCCGTGGGTTCGCGCGTTCAGCGA 4137861 29 100.0 32 NNNNNNNNNN ............................. AGGTGTACGGTCAGCGCGTGCTGCGGCGGTCG 4137922 29 100.0 33 NNNNNNNNNN ............................. CACTGGTGATCTGGATCAGGGATTATCTCAATC 4137984 29 100.0 33 NNNNNNNNNN ............................. GACCATCCTGAACAGCAGCGATGATTGGCTCAA 4138046 29 100.0 32 NNNNNNNNNN ............................. AGCGGTGACGGCTACCCGACCGTGGTGGTGGA 4138107 29 100.0 32 NNNNNNNNNN ............................. ACATAGGTGCTTCTGGTAACGGTAGCATTGTA 4138168 29 100.0 32 NNNNNNNNNN ............................. CCGCGCTCTGAGCGCCGCGAGCTCTTCGCCAA 4138229 29 100.0 32 NNNNNNNNNN ............................. GGCGGTTCCAAGGCATCGAGGATGCGTTTCTG 4138290 29 100.0 32 NNNNNNNNNN ............................. TCCCAGTCCTGGCGGTTGATCCACTCGACGGC 4138351 29 100.0 32 NNNNNNNNNN ............................. GCTGATTTCCCGCCAAAGGAATGTGGTTGCAA 4138412 29 100.0 32 NNNNNNNNNN ............................. GCCTTCGCCGCCTCGATGCGGGCCTTGATGAC 4138473 29 100.0 32 NNNNNNNNNN ............................. GTGCGTGAGCGCTCCATGGACCGCGCTCTGAT 4138534 29 100.0 32 NNNNNNNNNN ............................. GCGCTCGCGCAGGTGACGCACAAGCGGGGTGA 4138595 29 100.0 32 NNNNNNNNNN ............................. GTGGTGCTGACCGACGAAGACGCCGACGCCAG 4138656 29 100.0 32 NNNNNNNNNN ............................. TTGCAGCCCGCCAGCCGCAGCTTCGGGAGGGC 4138717 29 100.0 33 NNNNNNNNNN ............................. GGAAGACGATATCAGCGCCGATGACTGGGAGTA 4138779 29 100.0 32 NNNNNNNNNN ............................. AACATCAAGGGGAGGGCCTGATATGGAATGCC 4138840 29 100.0 32 NNNNNNNNNN ............................. TTGCTTTCATTGGTGCTGCCTCTTTCGGTTGA 4138901 29 100.0 32 NNNNNNNNNN ............................. CCGTATGCGAATTGGAGGATGGTGTGGGCCGG 4138962 29 100.0 32 NNNNNNNNNN ............................. CTTGATGTCAGCCGTCACCTTGTTCGGGGTGC 4139023 29 100.0 33 NNNNNNNNNN ............................. TTTGTGGACATGGCGGCCGAGCTGTGGAGCTGG 4139085 29 100.0 33 NNNNNNNNNN ............................. TCGGTCGTGGCTATCTGGAGCGCCGCGATTGGT 4139147 29 100.0 32 NNNNNNNNNN T............................ AGCATTCGAAGATTTTTCCCGCACGGTGCGGA 4139208 29 100.0 32 NNNNNNNNNN ............................. TTCACCAGTCTTCAGAATCTCGTAAATCTTAC 4139269 29 100.0 32 NNNNNNNNNN ............................. ATCTAGCCTGTTTGGGGCCACCGTTTCTGATT 4139330 29 100.0 32 NNNNNNNNNN ............................. ACCCTTGTCCGCGTCGCCCTGGTCGGCGAGGT 4139391 29 100.0 33 NNNNNNNNNN ............................. CTGGGGCCGCGCATCGACAAGATCGAGGCTCAG 4139453 29 100.0 32 NNNNNNNNNN ............................. GTGACGTACACCGACCGGCCAACGCGAAGCGC 4139514 29 100.0 32 NNNNNNNNNN ............................. CAAGCCGCACGCGGTTAACCGTAAGTGGCATT 4139575 29 100.0 32 NNNNNNNNNN ............................. CTACATCCATCGGAGAAATGGTCCGCGTCAGC 4139636 29 100.0 32 NNNNNNNNNN ............................. AAAACCTGTCTGGTACGCACGGCAACGTTGGG 4139697 29 100.0 32 NNNNNNNNNN ............................. AAAAAGCCCGGCTCCGGGCCGGGCTTTCCTGA 4139758 29 100.0 32 NNNNNNNNNN ............................. GATCCACATTGCGATTGCGTATGTGCTCATAC 4139819 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 39 29 32 CGGTTCATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [4,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [35.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [47,68] Score: 0/0.18 # # Final direction: R [0,1.05 Confidence: HIGH] >NC_009439 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 4137557 29 79.3 37 AGCGCGGGTG .......................------ AACACGGTCAGGTCGTCGCGGTTCATCCACTGCGCGA 4137623 29 100.0 32 CACTGCGCGA ............................. GCCTCAAACGCCGCCCGCTCCGCATCCATCTT 4137684 29 100.0 32 CATCCATCTT ............................. ATAAGGCGCTTGCCTAACGACTCATGAAAGAC 4137745 29 100.0 32 CATGAAAGAC ............................. ATCGTTCACAGCAACAGCAGGTTCGGTTGCCA 4137806 29 100.0 32 TCGGTTGCCA ............................. GCAGGAACGCCGTGGGTTCGCGCGTTCAGCGA 4137867 29 100.0 32 CGTTCAGCGA ............................. AGGTGTACGGTCAGCGCGTGCTGCGGCGGTCG 4137928 29 100.0 33 GCGGCGGTCG ............................. CACTGGTGATCTGGATCAGGGATTATCTCAATC 4137990 29 100.0 33 TATCTCAATC ............................. GACCATCCTGAACAGCAGCGATGATTGGCTCAA 4138052 29 100.0 32 ATTGGCTCAA ............................. AGCGGTGACGGCTACCCGACCGTGGTGGTGGA 4138113 29 100.0 32 TGGTGGTGGA ............................. ACATAGGTGCTTCTGGTAACGGTAGCATTGTA 4138174 29 100.0 32 TAGCATTGTA ............................. CCGCGCTCTGAGCGCCGCGAGCTCTTCGCCAA 4138235 29 100.0 32 TCTTCGCCAA ............................. GGCGGTTCCAAGGCATCGAGGATGCGTTTCTG 4138296 29 100.0 32 TGCGTTTCTG ............................. TCCCAGTCCTGGCGGTTGATCCACTCGACGGC 4138357 29 100.0 32 ACTCGACGGC ............................. GCTGATTTCCCGCCAAAGGAATGTGGTTGCAA 4138418 29 100.0 32 GTGGTTGCAA ............................. GCCTTCGCCGCCTCGATGCGGGCCTTGATGAC 4138479 29 100.0 32 CCTTGATGAC ............................. GTGCGTGAGCGCTCCATGGACCGCGCTCTGAT 4138540 29 100.0 32 GCGCTCTGAT ............................. GCGCTCGCGCAGGTGACGCACAAGCGGGGTGA 4138601 29 100.0 32 AGCGGGGTGA ............................. GTGGTGCTGACCGACGAAGACGCCGACGCCAG 4138662 29 100.0 32 CCGACGCCAG ............................. TTGCAGCCCGCCAGCCGCAGCTTCGGGAGGGC 4138723 29 100.0 33 TCGGGAGGGC ............................. GGAAGACGATATCAGCGCCGATGACTGGGAGTA 4138785 29 100.0 32 ACTGGGAGTA ............................. AACATCAAGGGGAGGGCCTGATATGGAATGCC 4138846 29 100.0 32 ATGGAATGCC ............................. TTGCTTTCATTGGTGCTGCCTCTTTCGGTTGA 4138907 29 100.0 32 TTTCGGTTGA ............................. CCGTATGCGAATTGGAGGATGGTGTGGGCCGG 4138968 29 100.0 32 TGTGGGCCGG ............................. CTTGATGTCAGCCGTCACCTTGTTCGGGGTGC 4139029 29 100.0 33 TTCGGGGTGC ............................. TTTGTGGACATGGCGGCCGAGCTGTGGAGCTGG 4139091 29 100.0 33 GTGGAGCTGG ............................. TCGGTCGTGGCTATCTGGAGCGCCGCGATTGGT 4139153 29 96.6 32 CGCGATTGGT T............................ AGCATTCGAAGATTTTTCCCGCACGGTGCGGA 4139214 29 100.0 32 ACGGTGCGGA ............................. TTCACCAGTCTTCAGAATCTCGTAAATCTTAC 4139275 29 100.0 32 TAAATCTTAC ............................. ATCTAGCCTGTTTGGGGCCACCGTTTCTGATT 4139336 29 100.0 32 GTTTCTGATT ............................. ACCCTTGTCCGCGTCGCCCTGGTCGGCGAGGT 4139397 29 100.0 33 TCGGCGAGGT ............................. CTGGGGCCGCGCATCGACAAGATCGAGGCTCAG 4139459 29 100.0 32 CGAGGCTCAG ............................. GTGACGTACACCGACCGGCCAACGCGAAGCGC 4139520 29 100.0 32 CGCGAAGCGC ............................. CAAGCCGCACGCGGTTAACCGTAAGTGGCATT 4139581 29 100.0 32 AAGTGGCATT ............................. CTACATCCATCGGAGAAATGGTCCGCGTCAGC 4139642 29 100.0 32 CCGCGTCAGC ............................. AAAACCTGTCTGGTACGCACGGCAACGTTGGG 4139703 29 100.0 32 CAACGTTGGG ............................. AAAAAGCCCGGCTCCGGGCCGGGCTTTCCTGA 4139764 29 100.0 32 GCTTTCCTGA ............................. GATCCACATTGCGATTGCGTATGTGCTCATAC 4139825 29 100.0 GTGCTCATAC ............................. ACTTAGCCTA ========== ====== ====== ====== ========== ============================= 38 29 32 CGGTTCATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [4,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [31.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [108,62] Score: 0/0.18 # # Final direction: R [0,1.05 Confidence: HIGH] >NC_009439 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 4149218 29 96.6 32 GTATCGGCTT .......G..................... GCGCTGATCGACTGCAACGCGTTCTACTGCAG 4149279 29 100.0 33 TCTACTGCAG ............................. TGGTCTGGCCTGGCGTGCCAGCTCTTGGCGGTG 4149341 29 100.0 32 CTTGGCGGTG ............................. TTTATCCAGGCGGCGGGGGCGGTGGGCAGCAC 4149402 29 100.0 32 TGGGCAGCAC ............................. GCGCCGGCGCCGCAGAGCCTGGCCGGCCGAGA 4149463 29 100.0 32 CCGGCCGAGA ............................. GCGGCCATTGAGCTTGCAATCGAACAGGGCAC 4149524 29 100.0 32 AACAGGGCAC ............................. ATCGTCGGCGGCGCTGACGTGTACGTGTCGGA 4149585 29 100.0 32 ACGTGTCGGA ............................. GGTCAGCCGATCACGCGGCTCAGAAATCCAGG 4149646 29 100.0 32 GAAATCCAGG ............................. CTGGTCTGTCGCCGCTCTCCGCACTGTCTGGC 4149707 29 100.0 32 ACTGTCTGGC ............................. TCGAACATTTCCCACTCGCTCGCCTTCATGAT 4149768 29 100.0 32 CCTTCATGAT ............................. AAAAAGCCCGGCTCCGGGCCGGGCTTTCCTGA 4149829 29 100.0 32 GCTTTCCTGA ............................. AAAAAGCCCGGCTCCGGGCCGGGCTTTCCTGA 4149890 29 100.0 32 GCTTTCCTGA ............................. CGCGGCGGCGCCGACGTCATGCACGGCCGGCC 4149951 29 100.0 32 ACGGCCGGCC ............................. GAAGGCCTGGCAGTGAAGCTCGACAACGGCCG 4150012 29 100.0 32 ACAACGGCCG ............................. TCCTCGGTGAGGGCGGCGATCACATCGGCTGC 4150073 29 100.0 32 CATCGGCTGC ............................. GGCTCGGCGGTCATCCACATCGCTACAGGTGA 4150134 29 100.0 CTACAGGTGA ............................. ACTTAGCGTA ========== ====== ====== ====== ========== ============================= 16 29 32 CGGTTCATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [4,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [45.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [158,86] Score: 0/0.18 # # Final direction: R [0,1.05 Confidence: HIGH] >NC_009440 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 1082242 24 100.0 38 NNNNNNNNNN .......T......A......... ATTCTATACCACTGCATGGTCTCGGCAGTTGAAGGTGA 1082304 24 100.0 41 NNNNNNNNNN ..........C............. TGATTTTGACACGGCCTATCAAAATGTAATAAAAACGCATA 1082369 24 100.0 40 NNNNNNNNNN ..........C............G TAATAGGTATAATATTGGGCATTCTCGCCCTAGTTCAATT 1082433 24 100.0 40 NNNNNNNNNN ..........C............. AGACCCAAAACCTAAAACTCCAAAAAGTCTTTGAGCAATT 1082497 24 100.0 39 NNNNNNNNNN ..........C............. TTACTTCTAATGATTACAGGGATTTCTCAGAACCCTTCT 1082560 24 100.0 39 NNNNNNNNNN ..C.......C............. GCTGAAATTGGCAGAGGTAAGGAAGCTAATCGAGTCGAA 1082623 24 100.0 44 NNNNNNNNNN ..........C............. GTGAGGATTCACCGAATCCTGCCTTAGACGATACCGAGCAGAAG 1082691 24 100.0 41 NNNNNNNNNN ..........C............. AGAAGAAAAAGTATACTTGAAAAGAAGATTGAATTTTTAGA 1082756 24 100.0 40 NNNNNNNNNN ..........C............. ATCAAATGATGCCAAAAAGTGATCTACCTATTCTTTTCAT 1082820 24 100.0 40 NNNNNNNNNN ..........C............. AACATGATAAGGCTTTACTTAGAAAGTTAGAGAAAAAATT 1082884 24 100.0 42 NNNNNNNNNN ..........C............. CGTGATTCATTAAGGTTATCATAATGAATTGGAAAACAGTCT 1082950 24 100.0 39 NNNNNNNNNN ..........C............. TTCAAAAAATGGTCAAGGTGATAGAGAGTCAGTTATTAG 1083013 24 100.0 39 NNNNNNNNNN ..........C............. AGTTCTACGGAAAACTATCAATCCAGATAGCAATAAAGA 1083076 24 100.0 40 NNNNNNNNNN ..........C............. ATGCGATTACCACCACGGCTCCGTTTTGCCCGTTTGCTCC 1083140 24 100.0 39 NNNNNNNNNN ..........C...........G. CATCGGTGTATTACTACTCACTGTGATTGGTGTATCAAG 1083203 24 100.0 39 NNNNNNNNNN ..........C............. TCCAGGTACATCGTCAGCGAATGGATCAGGAGGAGCAGG 1083266 24 100.0 42 NNNNNNNNNN ........................ TCCACTCGGTGCCGTGAAAGTTTTGACAAGACTCATGTTTGA 1083332 24 100.0 40 NNNNNNNNNN ........................ TCAATAATTGACGAGCAAGATTTAGTGATTCCAGACGAGG 1083396 24 100.0 39 NNNNNNNNNN ........................ ACAGTTCACAAACGGAATTGTTTGATAACTTCTTGGAAT 1083459 24 100.0 39 NNNNNNNNNN ........................ CTTACTTTCCATGTTCCTCCATTCACAAAGTAAAGTACT 1083522 24 100.0 40 NNNNNNNNNN ........................ CGGTCACTGAAGCCGATCCACCCTTAGTTGAGACCACGAG 1083586 24 100.0 39 NNNNNNNNNN ..........C............. TAATTGAAGTTACAGTAGAAATACAAAACCAAAAAATGA 1083649 24 100.0 41 NNNNNNNNNN ..........C............. ATCAAATTACTGGAGAAGAGTGGAACAAAATAATAAGGGAA 1083714 24 100.0 41 NNNNNNNNNN ........................ TTATACGGTTATTGGATGACGCGAGTATATCGTGAAAGTTA 1083779 24 100.0 40 NNNNNNNNNN ........................ AAAGCCTTCGTATCTGATGACGGCTCAGTTCCAATCGTTA 1083843 24 100.0 40 NNNNNNNNNN ........................ ATGAAGATGTGGAGTCAAAGACCGAAAGGCCCTGGGATTA 1083907 24 100.0 43 NNNNNNNNNN ........................ ATATTTTCGTCTTATGTAGTTTGTAATTGATCTTTTTTTCTTT 1083974 24 100.0 41 NNNNNNNNNN ........................ TTAGGACCGTTGGGTTCACGAGTTACAACGAGATGGTGAAA 1084039 24 100.0 40 NNNNNNNNNN ........................ TTCATGCAGACTACGAAGTCGCTCTAATTTATCTTAATCT 1084103 24 100.0 40 NNNNNNNNNN ........................ GTCATAAACCACTGATCACTAGTAGTATGTTCGAAACTAT 1084167 24 100.0 39 NNNNNNNNNN ........................ TGTTGTGTGAATCTGAACCCGAAGACGAGGACATGTACC 1084230 24 100.0 39 NNNNNNNNNN ........................ CAAGTGTTGTTTGTGGGGATAACGAACTTGGGGAAGGAA 1084293 24 100.0 40 NNNNNNNNNN ........................ TATATGACAAGTTGAGAAGGAATATTCTTCAACGCGGGAA 1084357 24 100.0 41 NNNNNNNNNN .......T................ AAGTTAGTGGGGGAAGCCCGTGTAGAGTTCAGATTAGGTAC 1084422 24 100.0 45 NNNNNNNNNN ........................ ATCATCCCCCTCATCAAAACACTCATCAAGATACTCATCACTGTA 1084491 24 100.0 39 NNNNNNNNNN ........................ TCTCGACGCGGAGAGGATAGAGCGGTTGGTCGAGGACGA 1084554 24 100.0 42 NNNNNNNNNN ........................ CGAATTTTTCCCCCGTGAGCGGGGGGTTAGAAAGAGTTTGAC 1084620 24 100.0 43 NNNNNNNNNN ........................ CCCATAGTGGTCCCCTATGAGTTTGAGGATACAACTTCATTAA 1084687 24 100.0 39 NNNNNNNNNN ........................ CGGGGTCCAAAGGTTCCCTGAATGTAAATATATTATTAC 1084750 24 100.0 40 NNNNNNNNNN ........................ CATATGACGCTCTCAAGGTAGTCACTCAAGATATCTTAGC 1084814 24 100.0 38 NNNNNNNNNN ........................ TTACGATCAGCCTTTTCGTTGCAGGTCTAATTCTCAGA 1084876 24 100.0 41 NNNNNNNNNN ........................ CCAACTGTCCAGCCTGCCCTGCTGGACTAGGGTTTTCGAAC 1084941 24 100.0 39 NNNNNNNNNN ........................ CTCGTTAAGATATGCATTGATCACTTACGCTTCCAAAAA 1085004 24 100.0 38 NNNNNNNNNN ........................ TCTTTTTTTGCGGTTATACAATTAAACGTTTCGTGAAT 1085066 24 100.0 44 NNNNNNNNNN ........................ ACGTCCTTCTCCGTGATGTAGAGCGTACTGCCTGAAGTCCCTGT 1085134 24 100.0 43 NNNNNNNNNN ........................ AAAGGACCATAATACATCACAACCTAGTCTGCTTGCAAACTGA 1085201 24 100.0 40 NNNNNNNNNN ........................ ATAACCGGAACGAAACTAGAGGAATACTGTGAACCGGTAA 1085265 24 100.0 40 NNNNNNNNNN ........................ CAATGAGTGTTGGTCTCATCCTTGAGGGTCCTGATGGAGT 1085329 24 100.0 38 NNNNNNNNNN ........................ CAATACGACTACGGGTTCGAATCTTGAAAAGTTCGGTG 1085391 24 100.0 40 NNNNNNNNNN ........................ ATGGTCAATTATGTCCTTAATATGATGGTAGAGATATTGA 1085455 24 100.0 39 NNNNNNNNNN ........................ TGGACATGTCTACATCAAAGAAGTCCAAGTACTTTGCCT 1085518 24 100.0 43 NNNNNNNNNN ........................ TACCTGAAGTTCTCCCACTCTAGCAGGGAGCTGCTGTCCTACT 1085585 24 100.0 41 NNNNNNNNNN ........................ GGCGTAAAAAATGCAATAGGAGGAGTAGGAAGCTTCTTTTC 1085650 24 100.0 40 NNNNNNNNNN ........................ TTACTATTTCTTAAGGAACGACGTAAGAGAAAGTAGTAAT 1085714 24 100.0 36 NNNNNNNNNN ........................ GGAATAAAGGACAAGGGATTCTTCATCAGTTTGGGA 1085774 24 100.0 42 NNNNNNNNNN ........................ ACAAGGAGTAGCTCTTACTGGTAATGAGGGTATAATAAGAAA 1085840 24 100.0 42 NNNNNNNNNN ........................ CGCTCTGGACCTCCTTCTTGACGTAGTCATTTCTCTTTAGTT 1085906 24 100.0 42 NNNNNNNNNN ........................ AGACAAGTCCAGAGGGTTAGGGAGGAGAGGAGGTCCAGTCTT 1085972 24 100.0 39 NNNNNNNNNN ........................ ACTTTAGCTTTCATGACTTACACAACTTCATATCCACCT 1086035 24 100.0 41 NNNNNNNNNN ........................ TGAATAAACCAACTCTCCTTCATAGTTTAAATTAATTACAT 1086100 24 100.0 40 NNNNNNNNNN ........................ AAGAGAATAAGGGTAGTATATAACCCTGCAATCACCTTAA 1086164 24 100.0 39 NNNNNNNNNN ........................ CAGCTTGTGGTATTCCTCCTAATATTACTGCATTGACCC 1086227 24 100.0 40 NNNNNNNNNN ........................ TTTAAGATAATTGGAAAAGAACAATTAACTAAGAACATTA 1086291 24 100.0 41 NNNNNNNNNN ........................ ATGGGGGTTCAAAGGGGGTGAAATACCCCTTCCGTCAAGGA 1086356 24 100.0 40 NNNNNNNNNN ........................ TGCATACAGTCTTTTGCAACACTTATTATTCTGTCATATT 1086420 24 100.0 38 NNNNNNNNNN ........................ CTTCGCTATATCTACCATGAATAAGTCTTGAATGTAAA 1086482 24 100.0 42 NNNNNNNNNN ........................ TTATATTTAGTTAGAATTTTTCTCAAAAAATCATCTCGATCT 1086548 24 100.0 40 NNNNNNNNNN ........................ CTAACCGTATTGAGTCCGTGGGTCGCACCGGCCCACAGTA 1086612 24 100.0 41 NNNNNNNNNN ........................ AGTCTGCTGGCTTTAATCTTCATGTAGTTGCCAGTAGGTTC 1086677 24 100.0 40 NNNNNNNNNN ........................ TTTTGCTTTTCCTTTCTCAAATTTTCTTCTCCATGATTCA 1086741 24 100.0 41 NNNNNNNNNN ........................ CGGTCTGAGTCTCTGGCTGAGACTCTAACTTCTTCTTGAGA 1086806 24 100.0 42 NNNNNNNNNN ........................ ATACCCTAGAGGAAGAAGTTGAGGAGGTCCTGGCTCAACTTG 1086872 24 100.0 40 NNNNNNNNNN ........................ ATGAAAACGACCGTGACGTCATTGCAATCATGAATCTCAA 1086936 24 100.0 42 NNNNNNNNNN ........................ ACATGCTAGATTTTGATAAAAATTGAATGCAGAATTTAACCA 1087002 24 100.0 39 NNNNNNNNNN ........................ AACTGTTGCAGAATCGTACTGGAAAGCGGTCCCTGCATT 1087065 24 100.0 36 NNNNNNNNNN ........................ AGCTTTACGGCAAAGAGAAAGAGTTTGATGAGTTCA 1087125 24 100.0 39 NNNNNNNNNN ........................ ACGGACACGACCCAGGGGTGATGGTCGTCCCGCTCATGT 1087188 24 100.0 36 NNNNNNNNNN ........................ TCAGAAGAGCCATCGAGAAGATGGTTAAGGAAGAGA 1087248 24 100.0 40 NNNNNNNNNN ........................ TCGATCTAATGAAATTGGCTAGGGAGTTCGGTCAGGGGTT 1087312 24 100.0 41 NNNNNNNNNN ........................ GTAAAATAGATGAAATCCATGTCCGCTCCACATTACTAGAA 1087377 24 100.0 37 NNNNNNNNNN ........................ CCTCTCAACCTCATGAAAAAGGTGGATGGGAGGGTAG 1087438 24 100.0 42 NNNNNNNNNN ........................ CTTCCCTGATGGTTACACCCCTTTGCACCTAGCGGTAGAACT 1087504 24 100.0 43 NNNNNNNNNN ........................ ACGGACCAATCTTTTGCCTTGCCTCCTTGTACTGCTCATCTAG 1087571 24 100.0 38 NNNNNNNNNN ........................ CCTCAGTGGGACGTTGGCTTTTGATTGGAGAGGTATTC 1087633 24 100.0 39 NNNNNNNNNN ........................ ATTTAACATCTTAGGTGTTATCTTAAGATATTCTGGCTT 1087696 24 100.0 39 NNNNNNNNNN ........................ TTCTAAGACGTGCTCCCTATGTGGGGAAATTCATGAGAG 1087759 24 100.0 40 NNNNNNNNNN ........................ CACCTGAAAGGTTACGGCATTCAGGTAGGACGCAATCCTA 1087823 24 100.0 39 NNNNNNNNNN ........................ TTATCATGGCGAATATCAGACGTATTAGGTCACTCATCT 1087886 24 100.0 40 NNNNNNNNNN ........................ CGCTCCATAATGATATAGTCATGATACAAGGATGGCGTTA 1087950 24 100.0 40 NNNNNNNNNN ........................ AAGCAGGAACTGCTTTACAAAATCAAATGGCTAATACATA 1088014 24 100.0 40 NNNNNNNNNN ........................ TTTTTCTCTTCTCTTTCTCATACGATAAAATACGTAAAGT 1088078 24 100.0 40 NNNNNNNNNN ........................ TTGCTTCTGGAAAGCGGCGCAAGAGAAATTGAGGTTTTAA 1088142 24 100.0 41 NNNNNNNNNN ........................ TACAGATAAGGAAATTCAAAACCTACAGCCAACAGAGAAAT 1088207 24 100.0 40 NNNNNNNNNN ........................ TTGTCTTTTGATTTTCTACTCAACAATTTTGAGTAGAAAA 1088271 24 100.0 40 NNNNNNNNNN ........................ CGTACGAGGCTATCACATGCCTGGGCAAAGGCGTGTGTTC 1088335 24 100.0 38 NNNNNNNNNN ........................ CTTGACGTGGAAGACAAGGCATTATTCACGAAATGGAT 1088397 24 100.0 42 NNNNNNNNNN ........................ GGAACAAAGTGCTACAGCCTTATTGCTAAGGCAAAACGAAGC 1088463 24 100.0 40 NNNNNNNNNN ........................ CATCGGGCGCCGGGAATGGTTCTAAGCCGTAACGCTTAAA 1088527 24 100.0 40 NNNNNNNNNN ........................ ATTCCCAGGGCATTATCTACAGAAAATGGCAGAAATATAA 1088591 24 100.0 44 NNNNNNNNNN ........................ CAAATCGCCCCCGTTTCGCCCGCCCGTTCTCTTTCCTTTTCACC 1088659 24 100.0 39 NNNNNNNNNN ........................ ATTGATATTAACGTTAAACCCCACGCCCCCAGTGAACTT 1088722 24 100.0 41 NNNNNNNNNN ........................ AACGCAGAAAGATGCGTGAGAGAAGCAATGGCGTATCTAGT 1088787 24 100.0 39 NNNNNNNNNN ........................ CCCCCGCTTAGTTTCTGCCACGCATACCTCTGTTCTGCC 1088850 24 100.0 39 NNNNNNNNNN ........................ TCTGGAACCTTAGTACTTCCATGTTAACCACCTGTGTAT 1088913 24 100.0 39 NNNNNNNNNN ........................ TTCACTCTCCCAGTAGACGTTCAGACGTTCAAGATCGTT 1088976 24 100.0 41 NNNNNNNNNN ........................ ATATGGGATGTTCCTATTTAATAAACAAGGAAAAAAGAAGG 1089041 24 100.0 40 NNNNNNNNNN ........................ TCTCACTTATGACTAAAGGTTCTTTGTTCTCAACTTCTTT 1089105 24 100.0 37 NNNNNNNNNN ........................ AGCCACAACCGACGACGGAAACTTACTATTTTGTGTA 1089166 24 100.0 40 NNNNNNNNNN ........................ GCACCCCACCAAGTCATGGTAGTGGTAGCACTAACAGTAG 1089230 24 100.0 41 NNNNNNNNNN ........................ AAGCTAGTTACATGAATCGTCACATTAAATGTGTTACTTGA 1089295 24 100.0 43 NNNNNNNNNN ........................ CAGTCCGTAATTACCCTATTGCTAACTAATTTCATAGGAATAG 1089362 24 100.0 40 NNNNNNNNNN ........................ AGTTAGGTTTTCTACTATCATTATCATTATTGAATCAGCG 1089426 24 100.0 39 NNNNNNNNNN ........................ TAGTATGGTGCGCCCAGCCTCCGTGCTGACGACATCATA 1089489 24 100.0 41 NNNNNNNNNN ........................ ACTGTCTCTATCGGTATCCAAAAATGTAAAAAATTCTCATT 1089554 24 100.0 36 NNNNNNNNNN ........................ ACCAATTGACGGCCACGGATGGAACTCCGACAGTGA 1089614 24 100.0 39 NNNNNNNNNN ........................ ATTGCCAGCATACGCTAGATCAAAGCTAAAAGATGAGTA 1089677 24 100.0 39 NNNNNNNNNN ........................ TGAATCCTAAAGCGTCAAGAATTACCTTCCATTCGTCAT 1089740 24 100.0 40 NNNNNNNNNN ........................ ATCAAGCGATTGCATTTGTTCTCAAGCAGAGGTTACAGGA 1089804 24 100.0 40 NNNNNNNNNN ........................ ATGAGAAGTAAAGAAGAATTGAATGAAGCGTTGGAGCAAA 1089868 24 100.0 45 NNNNNNNNNN ........................ ATGGGAATACGTTTACCAATTACTGATGCTGATGGGAAGGCCAAC 1089937 24 100.0 39 NNNNNNNNNN ........................ AGATTGGGAAAGGTGGTTCAAAGGTACAGACAATAACAT 1090000 24 100.0 41 NNNNNNNNNN ........................ ATCATAACTGACGTTGACACCTGCCATAGTTGTTCTGATGG 1090065 24 100.0 41 NNNNNNNNNN ........................ GCAAATGCCTTCAAAAACTACTTCAAGCGCTAATGTTAGGG 1090130 24 100.0 42 NNNNNNNNNN ........................ GAGAGAGAAAGATTTATATACTTGACATGACATATGTATAAA 1090196 24 100.0 38 NNNNNNNNNN ........................ CTATTAACATCATAAACAATTTCGCCACACTAACAGGA 1090258 24 100.0 38 NNNNNNNNNN ........................ ACGCAATGGATTATCTGGAAGAGATGCTGGGCAATAAG 1090320 24 100.0 41 NNNNNNNNNN ........................ CACGATAAATTATTGGATGAAAACATCTTTTAACTTGTCGC 1090385 24 100.0 42 NNNNNNNNNN ........................ TGAAAATATTTCAGCGTTATACTTTTGCTTAATGTACTCTTT 1090451 24 100.0 41 NNNNNNNNNN ........................ AGGCGGAAGCTAAGTATTTGTTAGAAATAGAGAAATATACA 1090516 24 100.0 40 NNNNNNNNNN ........................ TGTTGATCGGAGACATTATTTAGGTCTTTAATCCCAAATC 1090580 24 100.0 43 NNNNNNNNNN ........................ CGATTTACTGGGACTGTGATACCCAACAGCATAGACATCAGTT 1090647 24 100.0 42 NNNNNNNNNN ........................ TAGGATTTTTTTTCCTAGATGATAGATTAATTGGAAATTCCT 1090713 24 100.0 44 NNNNNNNNNN ........................ GAAGTGTTCGCGCCTCTGCTAGAACAATACGGAATGAAAGTGCC 1090781 24 100.0 41 NNNNNNNNNN ........................ ACACGTGGTGATTGATCCATTCCAACTAAGGCAAATCATTC 1090846 24 100.0 41 NNNNNNNNNN ........................ AAGTTATTCGGCGCTTTGCGCCTTCTTTTTTTGCTTAAACA 1090911 24 100.0 45 NNNNNNNNNN ........................ AAATAATTAGTTAGTAGGAGGATAGTTTTGAAAACTTTTTAGAAG 1090980 24 100.0 41 NNNNNNNNNN ........................ GTTTGTTTTAGCGCAATATTTAGATCAACAGAAGAAGAAGA 1091045 24 100.0 40 NNNNNNNNNN ........................ ACCCAAAAACGTAGTGGGGAAAATATAATCTTCATTATTT 1091109 24 100.0 40 NNNNNNNNNN ........................ TAGCCCCAGTCGGTTTAGGCGGAAAATTCAACATTAAATT 1091173 24 100.0 39 NNNNNNNNNN ........................ TGACGGTTTGACAGAGGTCTATGTGTTCACATACAGTAA 1091236 24 100.0 40 NNNNNNNNNN ........................ TGAGAAGAGAGAACTATATTTTAGTGAAAAAAATGTCAGC 1091300 24 100.0 42 NNNNNNNNNN ........................ ACTATCCATCTTCCACAATTTATATTATCCATATTTTCATTA 1091366 24 100.0 40 NNNNNNNNNN ........................ AGAATTTATAAGCCAAATTCTTGATAGTTTCTAACAAACG 1091430 24 100.0 40 NNNNNNNNNN ........................ AATATTTGTAAATTTCATCAAACATTTTCCTAACTTTATC 1091494 24 100.0 39 NNNNNNNNNN ........................ AAAGAAGAGAATACAAGCTGTATTTTGTGAGGTTTAGCA 1091557 24 100.0 39 NNNNNNNNNN ........................ ATTTGGCAAAATCCTAGCCAGAAGATAGGGGGCGACAAC 1091620 24 100.0 37 NNNNNNNNNN ........................ CAGTGAAAAAGAAATTACTTAATGTAGTCGAAAAGTG 1091681 24 100.0 42 NNNNNNNNNN ........................ ATATGATGGAGAAACTCAAGTATATATTTTCACTTCAGATAA 1091747 24 100.0 39 NNNNNNNNNN ........................ AATCCAGAACACTACGCTTTACCAATACATGAAAAGTAT 1091810 24 100.0 39 NNNNNNNNNN ........................ TATAGAAAGCTGTTGGACGAAGCGGTCTCTCCTGAAGAG 1091873 24 100.0 1 NNNNNNNNNN ........................ NNNNNNNNNN ========== ====== ====== ====== ========== ======================== 151 24 40 CTTTCAACTCTATAGGAGATTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.20,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [69,412] Score: 0.18/0.18 # # Final direction: R [0.37,0.86 Confidence: MEDIUM] >NC_009440 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 1097313 24 100.0 41 AAAAGTTTCA ........................ AAGGCGAAATGCAGAAGATGTAGTAGCAAAGACAGCTGTGA 1097378 24 100.0 40 ACAGCTGTGA ........................ CAACTCTCATGATTATAATCCCTCCATTTTAAAATGTATT 1097442 24 100.0 40 AAAATGTATT ........................ AAGTTTACTTCAGTTAATGAGCAAGTCAGCGCAGTGCTAA 1097506 24 100.0 39 GCAGTGCTAA ........................ TTATATTTACGGGTAAGACGGCGTTAACGAAGCGTTAGG 1097569 24 100.0 42 AAGCGTTAGG ........................ AGTTTAAACGTTACAACTCTCGTTTCCAAACACCTCGTTTGT 1097635 24 100.0 40 CCTCGTTTGT ........................ AAAACGAGACCTTTGGCTAAATAAACCGCACCATAGATAT 1097699 24 100.0 42 CCATAGATAT ........................ CTATGAAATTGTCGCATTCGTATGCAAAATATTTCTGGATCT 1097765 24 100.0 39 TTCTGGATCT ........................ TACATATCCTTCAATTGTGATCTAGCGTATGCTGGTAGT 1097828 24 100.0 40 TGCTGGTAGT ........................ ATTTGGATTTTGATAATTTTCTTTTCTTTGTCATAATAAT 1097892 24 100.0 42 TCATAATAAT ........................ TATAGTTAAGTCATTTTTTCTTCTTGTGGTGGTATTACCTAT 1097958 24 100.0 40 TATTACCTAT ........................ TACCAATTTCTGCTAATAACGTGAACGTACTCTCGCTGAG 1098022 24 100.0 37 TCTCGCTGAG ........................ TAACTTATCCCCTACATGATTGCGAAAAAACAACAAT 1098083 24 100.0 40 AAACAACAAT ........................ TGTTTTTAAGGACCTGGAGGCAGTCCGCCATTTACCCCAC 1098147 24 100.0 39 TTTACCCCAC ........................ TGAGAACAGCTGTCTTCACTGCTGACCATCGAGCGACCT 1098210 24 100.0 40 CGAGCGACCT ........................ TTTTCTTTCTCATACATTACTCTTATTAGTTTACTAACAA 1098274 24 100.0 41 TTACTAACAA ........................ CTTCTTGTTCTTCTCTCTGCTTTACGCCTTCTTGTTCTTCC 1098339 24 100.0 41 TTGTTCTTCC ........................ TCTGTACGTGGGTCAATAAATGTCACAATCGCGTACTTCTT 1098404 24 100.0 39 CGTACTTCTT ........................ ATAATAATCAACGAGGCAAACTCCATGTTCTACAAACCA 1098467 24 100.0 37 CTACAAACCA ........................ ACTAGGCAAACGATACTGAGACACAGCGGGACTGCAG 1098528 24 100.0 42 GGGACTGCAG ........................ TTGGAAACACTCCGTATCAATCCTTTAGACTGCAACTCCTCA 1098594 24 100.0 40 CAACTCCTCA ........................ AACATTAGTGTAAAGCCTGCAGCGTTTGCTGGAAGCACGG 1098658 24 100.0 44 GGAAGCACGG ........................ TCTCGTCCTTAAATTTCAAAACTTCCATGTAGCTCGCCCCCTCT 1098726 24 100.0 40 CGCCCCCTCT ........................ CTTATGTACACACCACCTGAGCTAAGGAGTGTCTTAATCT 1098790 24 100.0 41 GTCTTAATCT ........................ AAATGGGACGATGAGGGTGTTCAACAGATACAACACCACAG 1098855 24 100.0 44 AACACCACAG ........................ ATTATATATAATATATGAATAATAGCCCCCGTGCTTCGCGCCTT 1098923 24 100.0 44 TTCGCGCCTT ........................ TCTTTTGCACTATCCATTCCGACCACATCTCTCGGCTTCGATAC 1098991 24 100.0 40 GCTTCGATAC ........................ TTGACGACGTGCTTACTCTTCTTTCCAGTTCTTGTTACTT 1099055 24 100.0 43 CTTGTTACTT ........................ TTATCGATAAAATCGTAAACGATTTGTTGCCTTATTACGTGAA 1099122 24 100.0 42 ATTACGTGAA ........................ ACACCTCTACTAACTTTACCAAAGCCTATCATAGTCCCAACG 1099188 24 100.0 38 AGTCCCAACG ........................ CCTTTATTCTTGCTATTAGATCGAATAAATCGCTCGCG 1099250 24 100.0 42 ATCGCTCGCG ........................ TAAGTGGACACTATTGATCACCTCAGGGCTAGATATATGCCT 1099316 24 100.0 45 ATATATGCCT ........................ TCATTGAAATACTCAGCAACTGTATCCCTTAACTCTTCCTTATTA 1099385 24 100.0 44 TTCCTTATTA ........................ AGTATACCTGGGAGTGCTGATGTAGATGCGTCACCGACCACGTT 1099453 24 100.0 40 CGACCACGTT ........................ ACTACGGGTCTCAAGGTAGTCGGTGTTCTTCTAGTAGCTG 1099517 24 100.0 41 CTAGTAGCTG ........................ ATCGTACTTTGCGCTGTACCTTATGAACAGTGGAATGTCCC 1099582 24 100.0 41 GGAATGTCCC ........................ GTAAAGGGGTTGTGTTTTACGTTTTGAGTGGTGTTTACGAC 1099647 24 100.0 39 TGTTTACGAC ........................ CTAAACATATATGAGTTCATTTTTTCCGACTTTCCTAGA 1099710 24 100.0 39 CTTTCCTAGA ........................ TAAAGTGATAGAATAAAAGCTATTATTCCAACTATTTCT 1099773 24 95.8 40 AACTATTTCT .............G.......... CCTTGGCAACTCGGACCCCCTCAAGCGTACGGAAGAGATT 1099837 24 95.8 40 GGAAGAGATT .............G.......... AAACTCTCGATCAAGACATTTATTGTCTCTTCATCTATCT 1099901 24 95.8 41 TCATCTATCT .............G.......... TCTAAGGAGGATAAAGAGGAAGATTGGGCATTTTGTTCTGT 1099966 24 95.8 40 TTTGTTCTGT .............G.......... TTAGTGTTTACGTATGCTCTTTGTTGAGCTAGTTGTTGAT 1100030 24 75.0 37 AGTTGTTGAT .............G.....----- TTCACGAGGATGATTATAAGCTCAGGGAGAAGATTGT 1100091 24 95.8 38 AGAAGATTGT .............G.......... ACGTAACCTGTAGATGTGTAACCAGGCTCAGACGAGAA 1100153 24 95.8 41 CAGACGAGAA .............G.......... GAACATCCGCCTTATCGTTATCTTTCTTCTTGAACAGGAAC 1100218 24 95.8 39 GAACAGGAAC .............G.......... TCAATTTATCATACCTACCTAGTCTTACTAAAGTACAGT 1100281 24 95.8 37 AAAGTACAGT .............G.......... GTTGGACTACCTGAAGTAATCGAGCTCAGTGGAGGCA 1100342 24 95.8 40 AGTGGAGGCA .............G.......... GTTTTCACGTGATACTTTATGATGTCGTTGCATCTATCGA 1100406 24 95.8 41 CATCTATCGA .............G.......... AGGACATAAGGCCTTGGCCATGGTCTCAATATCCCATTCTT 1100471 24 95.8 38 TCCCATTCTT .............G.......... GCACTGACGTTTACTATCTGCAGCCCACTTGGTGACTG 1100533 24 91.7 40 TTGGTGACTG .............G.........T ACACTGCCTTGATGAGCGGGATGCTTCCAATTCTCCCTCT 1100597 24 95.8 41 TTCTCCCTCT .............G.......... AGGATTCTTCTAAATGCTGTGACAAATGTTAGAATTAGATA 1100662 24 95.8 41 GAATTAGATA .............G.......... CAACGAAGAAAGAGTCGAGAAACTAAGCAGAGTCGAGCACT 1100727 24 95.8 40 GTCGAGCACT .............G.......... TATTCGTCGTACGATTCCACTTCAACAGAGTTCACAATAA 1100791 24 95.8 42 TTCACAATAA .............G.......... AGTTGCTCTAGCAGGAGAAGATCCTGCTCTTCGATTTTGAAT 1100857 24 91.7 GATTTTGAAT G............G.......... ATTACACTAA ========== ====== ====== ====== ========== ======================== 56 24 40 CTTAATCTCCTATAGAGTTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.00,-2.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [68.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [979,405] Score: 0.18/0.18 # # Final direction: F [0.86,0.37 Confidence: MEDIUM] >NC_009440 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1136094 28 96.4 52 CTAAAAGCAT ....................G....... ACGACACGTCTACACCCCCCCCCCGGTCGTGAGTGTGGGAAGCGGGGATCCC 1136174 28 89.3 41 CGGGGATCCC A............C......G....... ACTGGGGTCCATTGTGATGAAGATTTCGGAGAAATTGAAGA 1136243 28 100.0 39 AAATTGAAGA ............................ ACTCCCCTGTTACGACTGAACCAATACTTGATTGCACGT 1136310 28 100.0 40 GATTGCACGT ............................ ACCTCTACACACTAAGAGTAGCTGAGACCATAAAAACCAA 1136378 28 100.0 42 TAAAAACCAA ............................ ACACATCATAGCCATGTCACCGAACGGAACTCTGAGGTACTT 1136448 28 100.0 37 TGAGGTACTT ............................ GCATTCAACTAGTGGCGTCTCCTGAAGGGCAACTATT 1136513 28 100.0 39 GGCAACTATT ............................ GAAGGGCTATTCTGCGTACGCTTCCCACCTCTGGAGGCA 1136580 28 92.9 TCTGGAGGCA .............AT............. ACCGCTCTTAT ========== ====== ====== ====== ========== ============================ 8 28 41 GTTTCAAACCCTCGAAGGATCTCTACAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:57.14%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.50,-4.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [55.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [927,47] Score: 0.18/0.18 # # Final direction: R [0.18,1.05 Confidence: HIGH] >NC_009440 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 1104327 24 100.0 40 NNNNNNNNNN ........................ TCTCAATCTGTAGGCCAAGCCACTATTATCATAACTCCAC 1104391 24 100.0 41 NNNNNNNNNN ........................ TGAATGCAAGCCTGTCGTACATTACTATTCTACCTTGTTTG 1104456 24 100.0 42 NNNNNNNNNN ........................ TTTGTCTGTTTCGATTGGAATAATTTCAGCGTTACCATAAAC 1104522 24 100.0 39 NNNNNNNNNN ........................ TACCTGTATGACAATTCGCTAAAAATTTAAACTATCTAC 1104585 24 100.0 39 NNNNNNNNNN ........................ TCATTTCCATTTCTTTCAATTTATCAACTATTAACCTAA 1104648 24 100.0 42 NNNNNNNNNN ........................ GAGGAAAAGAAGGCTAACGCATTAAAGGCGTGGCATTTAGGG 1104714 24 100.0 39 NNNNNNNNNN ........................ GACCCATATTTAGGAGTTATGTCAGCTATATCCAAGCAT 1104777 24 100.0 41 NNNNNNNNNN ........................ TCTTGATTTCCATGTCTATCCCCTGCGCATATCTCATATCA 1104842 24 100.0 39 NNNNNNNNNN ........................ CATGAGCTGTCCCTCCGATAAGATCATATTTGATGCAGA 1104905 24 100.0 40 NNNNNNNNNN ........................ TGAAATAACCGCCGACATCCAACGCTGGAAATTTATATCT 1104969 24 100.0 40 NNNNNNNNNN ........................ AATCTTAAACCGCAACCTTTTATAAAATCTTCAACTGTAA 1105033 24 100.0 40 NNNNNNNNNN ........................ CCTATAACCTAATAGCATAATATTTACTATGTCCCTCCAT 1105097 24 100.0 39 NNNNNNNNNN ........................ TGCTCACCCTCTTCAGTTTCTGCGCCTTCTCCCTCACCG 1105160 24 100.0 40 NNNNNNNNNN ........................ TTGATATTTGAGTGCCTGCGCAAATTCCTCAAACAAATCT 1105224 24 100.0 40 NNNNNNNNNN ........................ TCTTTAGTCGCTATAATGTCGGGTAATGGTTGCTTACCAG 1105288 24 100.0 46 NNNNNNNNNN ........................ TCTGATTCTGATACCTCCTCTTCGCTCCCTTCTTGTTCACCTTCTT 1105358 24 100.0 39 NNNNNNNNNN ........................ CTTTTTTGCAACCTAGAAAGCCTTGTTGCGAAATATGGC 1105421 24 100.0 38 NNNNNNNNNN ........................ ATTGCTTCTACTTCTGCTGGCATTTTTTTCCACTAAAA 1105483 24 100.0 41 NNNNNNNNNN ........................ GCAATATTGGATAGGATTCATATCATCCAAGTTGCAATAAA 1105548 24 100.0 39 NNNNNNNNNN ........................ GCAATCATTGCGAAAATAACGGGGCATAAACGCCTGGAC 1105611 24 100.0 41 NNNNNNNNNN ........................ TAGGTAGAAGGCAGAAGGAAGTTTTAGCTTCGATATTGGAA 1105676 24 100.0 41 NNNNNNNNNN ........................ CGTTTCTCTAATCTCGCCAACCTAGTTGCGAAATATGGCTG 1105741 24 100.0 39 NNNNNNNNNN ........................ TATATTTCGTCGCTATATCGCCCAGAAGACGTCTGATAT 1105804 24 100.0 40 NNNNNNNNNN ........................ GTTCACGAGTAAAACTGTATAAGAGTGAGGTAACAAATCT 1105868 24 100.0 40 NNNNNNNNNN ........................ AAAGTGAAAGTGATGCTGGAGGTGAGGGACAGACTGGGAG 1105932 24 100.0 39 NNNNNNNNNN ........................ ATTTGGATCTTGAGAATTTTCTTTTCTTTGTCATAATAA 1105995 24 100.0 43 NNNNNNNNNN ........................ AAGGCGTATAACAAAACGGCGTATGTCATATGTTCTGCTTCTA 1106062 24 100.0 39 NNNNNNNNNN ........................ AGAGAGGGCTTCACTTACAAGTAAATCAGCACACCTTAT 1106125 24 100.0 40 NNNNNNNNNN ........................ GAGAAGTACCCGGGCGTATCCAGGCTAAGCCAGTTATCAA 1106189 24 100.0 40 NNNNNNNNNN ........................ TTTGCCATGGAAGAAGCGAAATGTCAGTGTTGGTAGCTCC 1106253 24 100.0 42 NNNNNNNNNN ........................ GAATAGTAAGTAAATCATCACCTGCAATTATCGTGTATTTTT 1106319 24 100.0 35 NNNNNNNNNN ........................ ATATAACGAAAGAGCGTTCACAAAAGCGTTAGTAG 1106378 24 100.0 37 NNNNNNNNNN ........................ ATTGCTATAAACCACATCATGGCTCCTAGCATCAACG 1106439 24 100.0 40 NNNNNNNNNN ........................ TACAATCTTATCAACTATGTCTTCCAAAAATGGTGGTAGA 1106503 24 100.0 41 NNNNNNNNNN ........................ CCAAAAATCGAATTCAAGGACCAAAACGTAAAACCACCTGG 1106568 24 100.0 38 NNNNNNNNNN ........................ TATGATGTTCTCATTGTATTTGTTGAGATCATGTTTAA 1106630 24 100.0 40 NNNNNNNNNN ........................ GACACGGCTTTGTAAACAGAGAACCCAGGCAGAACAGATA 1106694 24 100.0 40 NNNNNNNNNN ........................ ATACCGGTGTCCATACAGCCAATACCCCCAACACCGCCAC 1106758 24 100.0 42 NNNNNNNNNN ........................ TAATTATATAAGCCGAATTGATGTAAATAAGACAAGATGACT 1106824 24 100.0 39 NNNNNNNNNN ........................ CTTGTTTTTGTTCTTTTTCTTTGTAATCTTCTATTCTTA 1106887 24 100.0 39 NNNNNNNNNN ........................ TCATGAATCAGTTTGAAAGAAGAGAAGATTGGTTAAATG 1106950 24 100.0 39 NNNNNNNNNN ........................ GGTTTTGTCTCTTTTTCTGGCTTTCCCGCCAGAATCTTT 1107013 24 100.0 41 NNNNNNNNNN ........................ ATTTCGCAATTCATTTCGAATTGTTTCAATTCACTTCAAAT 1107078 24 100.0 41 NNNNNNNNNN ........................ CTTTCTTCTTCTATTCCTTATCTTTTCCTTCTTTTCACTAT 1107143 24 100.0 41 NNNNNNNNNN ........................ CTTATTTCAGAGGATCTAATAGACGAAGGCGGAATCTTTCT 1107208 24 100.0 41 NNNNNNNNNN ........................ CTGGCATTACCCAGGCTTGGCGACACACCAGAAGACAGACT 1107273 24 100.0 41 NNNNNNNNNN ........................ GTTTTTGTTGTTTCGAAGAGAATTGGCGGGGCGCTGTAATT 1107338 24 100.0 39 NNNNNNNNNN ........................ GTGGGAACAGCGGTGCTATTCATGACCCCTCGCCCAGGT 1107401 24 100.0 44 NNNNNNNNNN ........................ AGACTTTATTTCCAGATTTTTCTATATTTATCATTCCGTTTGAT 1107469 24 100.0 40 NNNNNNNNNN ........................ GAGCACTCTGGGGGATACCCCCCCGACCCCCTACTGCTAA 1107533 24 100.0 40 NNNNNNNNNN ........................ TGAGACCGGGACACCGCCGAAATTAAATCCGGCAACGCCA 1107597 24 100.0 40 NNNNNNNNNN ........................ TCTTCTTTGTCCATCTGTATATCCCAATCACGCCATCTGT 1107661 24 100.0 41 NNNNNNNNNN ........................ ACTACATATGACGCCGTGGATTGCAGATCTGCTATATTCTT 1107726 24 100.0 40 NNNNNNNNNN ........................ TCCTCTATCACGTCATCTATAGCCACACACTTTTGAGCGT 1107790 24 100.0 39 NNNNNNNNNN ........................ ATGGATAAAGACGAATTGAAAGAAATTATTAAGAATTTA 1107853 24 100.0 43 NNNNNNNNNN ........................ TACTTTTAATCCAGCTTGTCAATGGATGCAGAATTAGAGAGGC 1107920 24 100.0 39 NNNNNNNNNN ........................ CGTGGGGCTCGCTCTAACTTGTAACGACACATGTTCCTA 1107983 24 100.0 44 NNNNNNNNNN ........................ CCTGAGCTAAGGAGTGTCTTAATCTTATCGAAGTCGTCTGGCTT 1108051 24 100.0 43 NNNNNNNNNN ........................ CTTCGCCGTATAACGATCCTACAACAATAATCACTGATTTTGA 1108118 24 100.0 39 NNNNNNNNNN ........................ GTAATGAAAGTAATGTCTTTTCTCATACGAAAAGACCAA 1108181 24 100.0 41 NNNNNNNNNN ........................ AGATGATGCACTGGCAGAGGCGACAAGAGAAAAACCAGGCT 1108246 24 100.0 39 NNNNNNNNNN ........................ CAATGAATTCAGAAAACAGCTGTTCATCCTGGTTCTCAG 1108309 24 100.0 38 NNNNNNNNNN ........................ ACAAGGACGTTTTCGTGATCCAGGTGAGCGAATACACA 1108371 24 100.0 38 NNNNNNNNNN ........................ AGCAATAATTTAATTGCACTATTTTTAACTGTGCATGA 1108433 24 100.0 39 NNNNNNNNNN ........................ TTCACTGTCTACACATAAGTATAAGGGGCTTCGCCCCTT 1108496 24 100.0 41 NNNNNNNNNN ........................ CATAATTCGTTTCTGTATTTGGCGTCAAATTTATTTTTAAT 1108561 24 100.0 44 NNNNNNNNNN ........................ ATTTGAAATAAGACAAATCAGTGCAGAAGAGGCAAGGAAACTAG 1108629 24 100.0 42 NNNNNNNNNN ........................ AGATACCATTTTTTCTCTTGTTTAAACGTATCTACGAACCAG 1108695 24 100.0 41 NNNNNNNNNN ........................ ACCCCGCCAATCAGTGCGTTGATGTTCGCTGGCTTCATATC 1108760 24 100.0 42 NNNNNNNNNN ........................ TATATATTATATTATGAATTATACCACACACTTCTTTTTCGC 1108826 24 100.0 41 NNNNNNNNNN ........................ AGAAACGAATTGTTAGTTTACTTATCACGCCTTCATTCCCA 1108891 24 100.0 41 NNNNNNNNNN ........................ ATATCCACCCTTCTCACCAAAAGAATAATACAAAAATTTAA 1108956 24 100.0 43 NNNNNNNNNN ........................ TTGTCAACAGTTTCCGATAAGTCGTGAAGTTCATGTCATTTAA 1109023 24 100.0 51 NNNNNNNNNN ........................ ATTCTAGCTCGAATTCTGTATCTGAAATTTTACTTACTTTTTTGAACGACA 1109098 24 100.0 40 NNNNNNNNNN ........................ ATTATTACTACTATATCATCCGGATTCATTTTCTATCCCG 1109162 24 100.0 35 NNNNNNNNNN ........................ CTTATTTCTTCGCGGTTTATAATGGACCCGGAACG 1109221 24 100.0 41 NNNNNNNNNN ........................ TATCTTCCTGACGTAGATGATGCAGTCCAAACAATAGATAG 1109286 24 100.0 40 NNNNNNNNNN ........................ TGTACCAAGCCTGGATGGGTAGACCAGGACCGTGATCAAT 1109350 24 100.0 39 NNNNNNNNNN ........................ TCTTTCATTGGGTTCGTATAAAAATCCTTGACCTAAGGA 1109413 24 100.0 43 NNNNNNNNNN ........................ CAGACAATACGATCGAGTAGGGGACTGTGTGTAAAAATGAGGG 1109480 24 100.0 40 NNNNNNNNNN ........................ TGTACACTTCCTTCTTCTTAGGCAAGGTTATTTTAACCTT 1109544 24 100.0 39 NNNNNNNNNN ........................ GGCGGGTGAAAGAACTACTCGAGAAAGAGAAAAGAAAAA 1109607 24 100.0 41 NNNNNNNNNN ........................ AGTATCATTCAGTGGAAAGTTGTACGGTATGAGGAGTCATA 1109672 24 100.0 39 NNNNNNNNNN ........................ ATTCCACGATTTTAACCTTTACAGATTCCCCATATCCTG 1109735 24 100.0 40 NNNNNNNNNN ........................ CCTAGATCACGGGGCCAATCCAAACGTGAAAGATCTAGAT 1109799 24 100.0 41 NNNNNNNNNN ........................ TCAAAGGTTGCTGAGGACTGTTATAGGGATGCACTCTCAGT 1109864 24 100.0 39 NNNNNNNNNN ........................ TTGATCGTTAAAAAGTAACGTAAGACGTTTCACAAGAGA 1109927 24 100.0 40 NNNNNNNNNN ........................ ATATTGATTATGAAGACTTTAAGAAAGATACCAATTCTAT 1109991 24 100.0 41 NNNNNNNNNN ........................ TAATTCCTCTTTGATCTCTCTGGATTCTTGTTTTGTTGAAT 1110056 24 100.0 40 NNNNNNNNNN ........................ TTATTTCGAGTTTCTCATATATCTCCCACGTTATGTCAGA 1110120 24 100.0 39 NNNNNNNNNN ........................ CTCTCGTTAAGGAACTTACTCAAAGCCCTCAAAGACGAT 1110183 24 100.0 39 NNNNNNNNNN ........................ TTCAACTCCACGATTGATTTGATAATTATCAAGGCTTTT 1110246 24 100.0 43 NNNNNNNNNN ........................ AATGAGAGAGTCAGGCCGAGGCCCCTCATTACATCTATCATAT 1110313 24 100.0 39 NNNNNNNNNN ........................ ATAAACCAGCGTTTCCCTACAAGTATGAGGCAAAGAACA 1110376 24 100.0 43 NNNNNNNNNN ........................ AGGAATGAAGTGAGTTGTCCGGGTGGTACACCAGTCAAGTCAG 1110443 24 100.0 35 NNNNNNNNNN ........................ GCTTGTTGCTCAGCCATTGCGTAACCTCACCCCAC 1110502 24 100.0 38 NNNNNNNNNN ........................ TGGACACGTTGGGAAGGCCTTGCCACGCGGAACTCAGA 1110564 24 100.0 42 NNNNNNNNNN ........................ AGAGACTGGACCATAAAAGGAGTTCCTAAAGCGGGTAATAAA 1110630 24 100.0 38 NNNNNNNNNN ........................ TAAAGATTGACCTTATTACTCTTGACAAATATATCCCG 1110692 24 100.0 40 NNNNNNNNNN ........................ AACTTTGAAGTCAGAGTTTTCTGCTTCTTTTATTACTTTA 1110756 24 100.0 39 NNNNNNNNNN ........................ TACATTACCTTGATTATCCATTGTTGCGTTTAGCTGAAG 1110819 24 100.0 41 NNNNNNNNNN ........................ TATGATTTTCTCGCTATTCACCACCTCCTTGATATACTGTA 1110884 24 100.0 40 NNNNNNNNNN ........................ TCCATATAGAGATTTCTAATAATCAATTGGGGATAGATAT 1110948 24 100.0 37 NNNNNNNNNN ........................ ACGTTGAACCAACGTTACCCCCCGCCGTCAAAGACGC 1111009 24 100.0 38 NNNNNNNNNN ........................ TCCACGGAGGGGTGGAGAATGAAACTATTCGAAGGGAC 1111071 24 100.0 39 NNNNNNNNNN ........................ ATGAGATCTACCTCGAAAATACGAAGGCAGACGTTGAGG 1111134 24 100.0 39 NNNNNNNNNN ........................ GAAAATCTCAAAGACTTGTTAATCCCATCAAAAAAATGG 1111197 24 100.0 37 NNNNNNNNNN ........................ ATATCGTTATCCGCGGTCATTCTCACGTGAGTGATTG 1111258 24 100.0 40 NNNNNNNNNN ........................ ACGGTACGCCGTCGCCGACGCGGGGGATACCCTGTATCAG 1111322 24 100.0 38 NNNNNNNNNN ........................ AATAGTCTGCGTGGAAGTAAGTGACCTTCACGAACTTT 1111384 24 100.0 40 NNNNNNNNNN ........................ CGTGACCCCGCTCGTGCGGTCACGGCATGCTAGGAGGAGG 1111448 24 100.0 38 NNNNNNNNNN ........................ AAATTTTTAGAAGAAATATACGAATGTGTAGATAAAAA 1111510 24 100.0 41 NNNNNNNNNN ........................ TTTCTTTGTTCACGATCACTAACTCTAAGATATAATCGGGG 1111575 24 100.0 40 NNNNNNNNNN ........................ CAATAAAATCGTGATCAAAACGTTTTTGAATGAACTCATG 1111639 24 100.0 41 NNNNNNNNNN ........................ CTCATCAAGAGGCATTATTTTCTCATCAAAACCGCCAAGAT 1111704 24 100.0 43 NNNNNNNNNN ........................ AAAAATTATTCTTGTTGGATCTGTTGCTGCTATATTGGGTGTA 1111771 24 100.0 41 NNNNNNNNNN ........................ TTAGTAAGTCCCCTAGGGCATGATCCCAGAAATAACCACCA 1111836 24 100.0 43 NNNNNNNNNN ........................ GTAGATTATCAATCTTACCCAACGGTCCAAAGGAACTAAGTAT 1111903 24 100.0 40 NNNNNNNNNN ........................ TTTATCCTTAGGTATCTCATAGAGACTGGTTTAGCTTCGA 1111967 24 100.0 39 NNNNNNNNNN ........................ GCTATCAAAAGCTGGAGAGCAAGTAGCGACCTTTCTTTT 1112030 24 100.0 39 NNNNNNNNNN ........................ TAATCGGTTAAACCGCTTTTGAAAGGAAAATAGAATGAT 1112093 24 100.0 39 NNNNNNNNNN ........................ ATCCAAATCATTAGAATTAACGATAATTTCGGTAAGGAT 1112156 24 100.0 40 NNNNNNNNNN ........................ TACTGGAATCCGTATATAATTGATTCATTTAGTGGAACCA 1112220 24 100.0 41 NNNNNNNNNN ........................ AACTTCCTACTTAGACCGCGAATTAGCGATCTAGGAATCGA 1112285 24 100.0 38 NNNNNNNNNN .............G.......... AGTCTAACCCCCTTCTGTCCCTGATATTTTCCTCTATA 1112347 24 100.0 43 NNNNNNNNNN ........................ TTCTCAATTAGTCCACCCCAAGGTATCGTGAGAACCATAGTCG 1112414 24 100.0 37 NNNNNNNNNN ........................ AAAATTCGACGAGAAAATACAGAGAATCGCGAAGGCA 1112475 24 100.0 40 NNNNNNNNNN ........................ CTCCGCGAATTCTCTAAGTTTCGGAATAGCGTTGCCCTGA 1112539 24 100.0 43 NNNNNNNNNN ..........G............. ACAAGCCAAATGATGAAGTTACTACTACTAATACTACTACTAA 1112606 24 100.0 39 NNNNNNNNNN ........................ TTGCCATCGCCTCAACTACTGCCAGACCAAATGTCTCAC 1112669 24 100.0 41 NNNNNNNNNN ........................ TTCAGCTTAAGGATGACACTCTTGATATGTTGAGTCTTTCC 1112734 24 100.0 39 NNNNNNNNNN .......C................ GTAGGTGTGAAAATCACTATAGTCATCATACAGCCTCAT 1112797 24 100.0 39 NNNNNNNNNN ........................ TGCTTTGTACGTAAAATGACGTGCTTCTCCTTATACCAA 1112860 24 100.0 41 NNNNNNNNNN .............G.......... TGCACCAGTCCCTAGTGTAAACCCTTCCAATATTGACGTCT 1112925 24 100.0 42 NNNNNNNNNN .............G.......... CTTCATATCTTCAGCTTCAGGGTACCAGAGACGAATCTCACC 1112991 24 100.0 42 NNNNNNNNNN .............G.......... AGTAAAATAGGTCCTGCATTTGTACTAGGCGTTACGAATAAT 1113057 24 100.0 39 NNNNNNNNNN .............G.......... AGTATCGCAGCGGGCGGGGATGTCGCCGAAAAATCTACG 1113120 24 100.0 37 NNNNNNNNNN .............G.......... GTAATATCGGTCAATCCCACGAATGTGGACGTATACA 1113181 24 100.0 42 NNNNNNNNNN .............G.......... CGATGAACTGAAGGCAACGCCAAAACAACTGTTCAGGAAAAA 1113247 24 100.0 40 NNNNNNNNNN .............G.......... AGAGAGTCTAGGAGCAGGGATACAGAATGCTATAGGATCC 1113311 24 100.0 41 NNNNNNNNNN .............G.......... TATTGCGGACAAAGTTCAAAGTCATATATTTCTTTGCCCCC 1113376 24 100.0 40 NNNNNNNNNN ........................ ATTCACCCAGGGACGTTAATGCCGAATTCTATGAGGACAG 1113440 24 100.0 39 NNNNNNNNNN ........................ TTCTATAGTCAGGGGCATTTGGATTTACCTTAAGTTTGA 1113503 24 100.0 42 NNNNNNNNNN ........................ GAATATTGCAATTTCTGGATTATGAACACTGGAAAGTGATAG 1113569 24 100.0 38 NNNNNNNNNN ........................ TCGAAGTCCCTGTACCACCTCCACCCGTGCTAGTTCCT 1113631 24 100.0 37 NNNNNNNNNN ........................ CCCTGATCATCTTTAGCACTCATATGTTATCATGATA 1113692 24 100.0 39 NNNNNNNNNN ........................ ATCCAAGAACTCAATCAACTCCAGCGTATTTTCCCCAAA 1113755 24 100.0 40 NNNNNNNNNN ........................ ATCTTCCTCACCCTTATGTCCCAATGCCCCGAATTAGACC 1113819 24 100.0 39 NNNNNNNNNN ........................ GTAGCGTTTGAGGAACTAACCAATGCGACGATACAAGTA 1113882 24 100.0 40 NNNNNNNNNN ........................ GCACAATTGTTGTCGGTAAAGGAGAATGGAACAAACATAG 1113946 24 100.0 39 NNNNNNNNNN ........................ GCACCTCCGCCTCCCCCACCTCCACCTGCTCCGATTGCT 1114009 24 100.0 37 NNNNNNNNNN ........................ TAATTTTCTCGGTTACGGTACTGCCACTACTGGCAAT 1114070 24 100.0 40 NNNNNNNNNN ........................ TAAGGATGAACCTAATTGCTCAAGGAGAATAAGATCCTGC 1114134 24 100.0 40 NNNNNNNNNN ........................ GATAATGTAGCGTATATCCTCAAGCAGTTCTATAACAGAA 1114198 24 100.0 40 NNNNNNNNNN .............G.......... ATTATACTACTGTTATGTACTGTACTGTATATATTCCTTA 1114262 24 100.0 39 NNNNNNNNNN .............G.......... ATCTTTTCCACTGTATATTGACCATATCTTCTATCTAGA 1114325 24 100.0 42 NNNNNNNNNN .............G.......... TAAAGGAATGAGCTCTTGAATGACAAAACCCTTCGTTATACG 1114391 24 100.0 39 NNNNNNNNNN .............G.......... TCACTTTGCTCTTTATCGCATCTCCGACGTCGTTGAGAA 1114454 24 100.0 41 NNNNNNNNNN .............G.......... CCTTATGTAACTTGATCCATCTTCTGCACAACCTAGATCCT 1114519 24 100.0 43 NNNNNNNNNN .............G.......... CTCATGGTTCCCTGTCTCTCCTAGATGCATTAGACCAGACCCT 1114586 24 100.0 39 NNNNNNNNNN .............G.......... TATCATAAGAACATAGTAGAGAAGGCTCAGGATTACGCA 1114649 24 100.0 1 NNNNNNNNNN .............G.......... NNNNNNNNNN ========== ====== ====== ====== ========== ======================== 162 24 40 GTTAATCTTCTATAGAGTTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.83%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2190,867] Score: 0.18/0.18 # # Final direction: F [0.86,0 Confidence: HIGH] >NC_009440 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1137826 28 96.4 39 ATAATAGCGT ......A..................... AAATAGTACTGACTTGATACGGCTAGGTGATAATAGCGT 1137893 28 96.4 39 ATAATAGCGT ......A..................... GCAAAGGCCTTTCCCACACTCTCCAAGGGAGTATGAAGT 1137960 28 92.9 39 AGTATGAAGT ..A...A..................... CTTACGTCTTGAAAGTACTCGATTATCAATTTAACAGGT 1138027 28 96.4 41 TTTAACAGGT ......A..................... GCGTCAATTCTCTAAAAAGAAAAGGCTAGCGTGAAGGGGAC 1138096 28 100.0 41 TGAAGGGGAC ............................ TAAGTGAACCATGGGTATTCCCCCTCCGGGGGAACTTCGAC 1138165 28 100.0 39 GAACTTCGAC ............................ TCGGAAAGAACATATACATCCTCCCCGTGGTTCCCGGGT 1138232 28 100.0 39 GTTCCCGGGT ............................ GTGTTTGTCCCCATCTTTTGATGGGGCAGCTGCTCCTCT 1138299 28 96.4 39 CTGCTCCTCT ......A..................... TATACTTTGGAAAATCAGTATATCTCTTGTATCTTCTGT 1138366 28 100.0 40 TATCTTCTGT ............................ TCGATAGCGAACCTGATAACTTCGCTTCTATTCAGTCTGT 1138434 28 100.0 40 TTCAGTCTGT ............................ ATAGACGTATCGACCCGCCGTATAGCATCAAGAAGATAGT 1138502 28 100.0 43 AGAAGATAGT ............................ TACACGACGCGATCACACTCACATGCCCGCGTGTCGCCGTTGT 1138573 28 100.0 39 TCGCCGTTGT ............................ ATAACTCTATACGCTCTCACACGGCTGAGGTCGAGGAGC 1138640 28 100.0 41 GTCGAGGAGC ............................ CCACCTTCACCCTCGCCTTACGGCCCTTTTCCTTCCTCAGT 1138709 28 92.9 CTTCCTCAGT ......A....................T ACAACCCCC ========== ====== ====== ====== ========== ============================ 14 28 39 TTGTAGTGATCCTTTGAGGGTTTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.71%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.80,-0.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [224,1057] Score: 0.18/0.18 # # Final direction: R [0.37,0.59 Confidence: LOW] >NC_009446 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 179009 28 100.0 32 GGTTGCTCTT ............................ TATCAAAGAACCAGTCAAGGAACCATGAGTCG 179069 28 100.0 32 CCATGAGTCG ............................ ATTCGCAAACAAAACAGCGAAATTTGGGCGAG 179129 28 100.0 32 TTTGGGCGAG ............................ TGTCGAACTAAACGATGACCAGATTTGGTTAA 179189 28 100.0 32 ATTTGGTTAA ............................ TATCGCAGCCACAGCGTCGCGCAAGTATTAGC 179249 28 100.0 32 AAGTATTAGC ............................ GCCGCAACATTTCTGGCTCATTTAAATATAAG 179309 28 100.0 32 TAAATATAAG ............................ GTAAACCATCAAAATAACGTCAAATTGGGTTA 179369 28 100.0 32 AATTGGGTTA ............................ GCTATAGTTATCGAGTCCAGAAAAAATAAAGT 179429 28 100.0 AAAATAAAGT ............................ CTGCGGTCGG ========== ====== ====== ====== ========== ============================ 8 28 32 GTTCACCGCCGCACAGGCGGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [7,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-10.10,-9.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [155,98] Score: 0/0.18 # # Final direction: F [1.01,0 Confidence: HIGH] >NC_009445 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =========================== ====== 6666082 27 100.0 25 NNNNNNNNNN ........................... CGACTTCCGGTTTTTGACAGAGAAT 6666134 27 100.0 23 NNNNNNNNNN ........................... GTCCAGTCGGGGTGGCGGTCGAA 6666184 27 100.0 36 NNNNNNNNNN ..........G..............C. AAAGGCCGTATATCACCTATGACAAACCGTATATCG 6666247 27 100.0 1 NNNNNNNNNN CC.ATGAC..................T NNNNNNNNNN ========== ====== ====== ====== ========== =========================== 4 27 28 TTTTGACAAAACCGTATATCACCTATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [43.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [15,1118] Score: 0.18/0.18 # # Final direction: R [0.41,0.45 Confidence: LOW] >NC_009454 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1989208 30 100.0 39 CTGGCCCTCT .............................. GGCCCCGCCAGAAATTCGCTGGCCCGGCGCAAGGAGGTG 1989277 30 100.0 37 CAAGGAGGTG .............................. TCAGTAGGGACGATGGCTATTATATTGACCGCAGGTA 1989344 30 100.0 38 ACCGCAGGTA .............................. GCCAGAAGCATGATTTGGGGAGGGAAAAGAATTGCCGG 1989412 30 100.0 36 GAATTGCCGG .............................. CTATCACAAAAAAGTAGCATTCTGCGAGGATTGTGG 1989478 30 100.0 38 AGGATTGTGG .............................. GCAGCCATGCCTCTTCGTCCGGATTGCTGATGAAGCCG 1989546 30 100.0 35 GATGAAGCCG .............................. TCAACGACAGCAAAATAACCTCACCTGGGGAGGCC 1989611 30 100.0 35 TGGGGAGGCC .............................. GGCTACTGCATATTACATCGGTGAATCCAGGGATG 1989676 30 100.0 36 TCCAGGGATG .............................. TAGGCCTCGTCGAAGTCAATACCTGTGGTGGGCTCA 1989742 30 100.0 35 GGTGGGCTCA .............................. CCCACTGCCGGACATAACGATATGGTGAGGTGTGA 1989807 30 100.0 36 TGAGGTGTGA .............................. GCTAGAAGACATGCAGTTCCTTGAGCTGCGGAAGTT 1989873 30 100.0 35 TGCGGAAGTT .............................. TAAAAAAACCTCGATCATGTGCTCGCGCCAGACGC 1989938 30 100.0 35 CGCCAGACGC .............................. GTTCTTTTCACAGAGTAGGAAGTTTGGTTATGATA 1990003 30 100.0 38 GGTTATGATA .............................. TAAAGGAGTTAAATCTAATCCCTCTGATACTATATTAC 1990071 30 100.0 35 ACTATATTAC .............................. CATCTATGCATATATCCTCATATTCAGCAGACTGA 1990136 30 100.0 38 AGCAGACTGA .............................. TTCTTTTACCGCCCTTTCCACAACTTCTGATATCGAAG 1990204 30 100.0 36 GATATCGAAG .............................. CAGAACATTTATGGGGTGTGTTGGTGAGACAGGCAA 1990270 30 100.0 37 AGACAGGCAA .............................. CGCCGGGGGGCAGCGCCTGCTGGTCCGCCGCCGGGAG 1990337 30 100.0 37 CCGCCGGGAG .............................. ATCTCGTCCAGAAGTAGCTTCAGGTCCCCGGCACGCA 1990404 30 100.0 35 CCGGCACGCA .............................. CTCCAACTAATGCTACAACCGGAACTCACTATTTT 1990469 30 100.0 37 TCACTATTTT .............................. GCGCTGATCCGCTTCGACTGCAAGCAGTGGGATGCTG 1990536 30 100.0 36 TGGGATGCTG .............................. TTTCGTCGTCAGATTCAAGGAGATTGAAGATATTAT 1990602 30 100.0 36 AAGATATTAT .............................. CGAGCATCGGAACTGTGTCACGCCGGAAATCTCCGC 1990668 30 100.0 38 AAATCTCCGC .............................. GACGGCCAAGGGGCGCATATCTACCATCACCGATTTTG 1990736 30 100.0 38 ACCGATTTTG .............................. ATACACAGAGAAGCAAACATCCTGTGTCTTTATGCTGG 1990804 30 100.0 37 TTTATGCTGG .............................. TGCCCCAGCCGCTCGGCCTTTTCACGGTTGAAGTCGG 1990871 30 100.0 38 TTGAAGTCGG .............................. GCGTTTTTCGGCGATTTCGCCGCCGCTCTCGATGCGGG 1990939 30 100.0 38 TCGATGCGGG .............................. CCACCTCTACGACGAGGGGACCGACGATGACGAGGTCA 1991007 30 100.0 37 GACGAGGTCA .............................. CTGAGGAAGAACTGGGCTACCGGGTGGGGGACGCGAT 1991074 30 100.0 36 GGGACGCGAT .............................. GAACTTGGAAAGGCAGCTGCGGTTATAGATATTTTG 1991140 30 100.0 37 AGATATTTTG .............................. TTGGTACCGGAGTCAGTGCATGGGTTGCTCCATGAGC 1991207 30 100.0 38 CTCCATGAGC .............................. CGTCACTATTCAGAAACAGGATACCAAGCTAAAACTTT 1991275 30 100.0 37 CTAAAACTTT .............................. GCGCGATGGGGAAGCAGATCGCCTGCTCCCCTACCTG 1991342 30 100.0 41 CCCCTACCTG .............................. GGCATGTCGCTTTGTGCCGACGGACTTATCTTGATGGCGTG 1991413 30 100.0 37 TGATGGCGTG .............................. GGCTAGTCTTAAGGAGTGGAAGGAAGCCACTGGATTC 1991480 30 100.0 39 CACTGGATTC .............................. TCCCGTGCAGCGCCCCGTCGATAACCTCCGGCTTCACGC 1991549 30 100.0 39 GGCTTCACGC .............................. TGCCTTAAATCTTGCGACTGCTGGAGATTTGGATCTGGC 1991618 30 100.0 35 TGGATCTGGC .............................. CTCCACCTGATCATTCCCGTGCAGCGCCCCGTCGA 1991683 30 100.0 40 GCCCCGTCGA .............................. CCAGAGAGTTCATTCCGCGCAGGACCTTGACCATCCGTCC 1991753 30 100.0 35 CCATCCGTCC .............................. CCCTTGGGCTACTTCTACGTTACCGAGATTGAGCG 1991818 30 100.0 36 AGATTGAGCG .............................. CCACAACCACATCTCAAAATACAAGAACTGCAAAAG 1991884 30 100.0 36 ACTGCAAAAG .............................. ACTCCTGGGTATTTGATGAAGAGGGTGGCGTTAAGG 1991950 30 100.0 38 GGCGTTAAGG .............................. ACCCGCTTGCCGTCGCGGAGCATTCCCAGATCACAGTC 1992018 30 100.0 38 GATCACAGTC .............................. ACGAAATTAGAGAAGAATTCTTTCGCCGTACCCTGGAA 1992086 30 100.0 37 TACCCTGGAA .............................. TCACTTTTTAATTTTTATCAGTAAGTTTCGGCTCAGA 1992153 30 100.0 35 TCGGCTCAGA .............................. GGAATGACGGGCTTTTTCTTTCTTTTTTTTTCTGA 1992218 30 100.0 39 TTTTTTCTGA .............................. AAACGGCAGGCCGCTTGTATTCGCCGCAAGCGTTGAAGA 1992287 30 100.0 37 GCGTTGAAGA .............................. GCCCCTCCTTAACGAGGCAAAATGCGGTTTGCGCCAA 1992354 30 100.0 37 TTTGCGCCAA .............................. TTAAAGACCATGAAGCGTTAGACAAGTGGTTGTCATT 1992421 30 100.0 35 GGTTGTCATT .............................. TTTCACTGTTAGCGGTTTATAATCGGTTTGCCCGA 1992486 30 100.0 39 GTTTGCCCGA .............................. TCACTGAACGAAGTAGGTTAATTAACTTACGGAAGTGCT 1992555 30 100.0 36 CGGAAGTGCT .............................. GGTAAAACAGTGTCGACGGCCCATCATACTCCCTGA 1992621 30 100.0 36 TACTCCCTGA .............................. AGGCATGGAAGAAGACGTGGTTATCCACGCCGTCCA 1992687 30 100.0 37 ACGCCGTCCA .............................. GTCTCTCTGAGGCTGGCTTGCCCTTGTTCCAAGGAAC 1992754 30 100.0 37 TCCAAGGAAC .............................. ACCCGTCCAGATGACTATCCTGCTCCGCCGGTAGCCG 1992821 30 100.0 37 CCGGTAGCCG .............................. TCGGCTCCGGGATGATGCCCAGGGCACGGGCCTGTTT 1992888 30 100.0 38 GGGCCTGTTT .............................. AAAAACAGCCGCCGCACGCAAAGGTACGAAGAAATGAT 1992956 30 100.0 37 AAGAAATGAT .............................. GTTGTATTTCATACATGGATTTTAAAAAGTGCTATTT 1993023 30 100.0 38 AGTGCTATTT .............................. ATGCACTACGAAACTAGGGACGCCAGGACGTTCACGGG 1993091 30 100.0 37 CGTTCACGGG .............................. TCAGAACAAGATGTATACTCTAGGAAAGTTTTCTGAA 1993158 30 100.0 39 GTTTTCTGAA .............................. AAAATTGGAGCAAATTGCACAAAAGCAATAGAATATATT 1993227 30 100.0 37 AGAATATATT .............................. AACAAATTGACATTAAGTAAACATACTCTTAAAAGAT 1993294 30 100.0 37 CTTAAAAGAT .............................. TTAAAAAAGGAGTGATTTAAATGGCAAGATTAACAAA 1993361 30 100.0 38 GATTAACAAA .............................. ATATTCATGTTTCTCTGCCATTCCTTCAGGTCATCGGA 1993429 30 100.0 38 GGTCATCGGA .............................. GAAAATACTCTGCTCCAGCGGCTTCCCCAGATACTGTT 1993497 30 100.0 38 AGATACTGTT .............................. TGTCCTCGATAATTTTGTCATACATTGCTGGACACCCC 1993565 30 100.0 39 TGGACACCCC .............................. GAATCATATACTATAAAATATGTGCATGAATTCGTAAAA 1993634 30 100.0 36 ATTCGTAAAA .............................. GGAAGGCTTCGCAATAACCCAAGTCAAATGGTGCAA 1993700 30 100.0 37 AATGGTGCAA .............................. TCAAAAGCGAAAGCAACGGGTTTTCCATCCGTTGCTC 1993767 30 100.0 36 TCCGTTGCTC .............................. TGTGCGTGAAGCCCTCCGCCGAGCCGTACTTAACGG 1993833 30 100.0 36 TACTTAACGG .............................. GGTTAGGAAATTGGAGGTGCCCTGCGATGGCTGAAT 1993899 30 100.0 36 ATGGCTGAAT .............................. AGACTTACCGGGACGCAGCCTGGGACTGGTACAGAG 1993965 30 100.0 37 TGGTACAGAG .............................. AACTGGGTAATTTGCGGGTCAGAGGCTGGTCCTGGTG 1994032 30 100.0 35 GGTCCTGGTG .............................. AAAGATATCCAAAAATAACTATCACATAGACCATA 1994097 30 100.0 36 ATAGACCATA .............................. CTATAAGCATAGCCATTGGAACATGCATCTGCATTG 1994163 30 100.0 36 ATCTGCATTG .............................. GTGTTCTGCCTGTTAGGGCCGAAGAGGCGCAAGAGA 1994229 30 100.0 38 GCGCAAGAGA .............................. TCCCGCCGTCCTGCGAGACGCCGGAAGGGGAGGTGATA 1994297 30 100.0 35 GGAGGTGATA .............................. ATAGCCGATGCTTCAATTACATCCGCAAAAATAGC 1994362 30 100.0 36 CAAAAATAGC .............................. GGCGGTACTAGCTAAGGGTATTGCCAGCGTGTTTAT 1994428 30 100.0 37 GCGTGTTTAT .............................. TGGTTGCCGGGTTGGTAGTAAATCGGCCAGGTACTGA 1994495 30 100.0 36 CAGGTACTGA .............................. TCCTCATAACAGGCTAAAAACTGATAAACAATAAAA 1994561 30 100.0 37 AACAATAAAA .............................. GTACTCACGAGGCAATTATAAGCGACAGAGTATTTAG 1994628 30 100.0 38 GAGTATTTAG .............................. ACATACGCCGCCAACGAGGCGGCCTGCTATAGGCTTTG 1994696 30 100.0 36 ATAGGCTTTG .............................. GGAAATGCCAACGGCCGACACCGTACACACTTCCGC 1994762 30 100.0 37 ACACTTCCGC .............................. ATAGTGAAATGCTGGAAAAGGTAGACCGCTCTTTGAA 1994829 30 100.0 36 GCTCTTTGAA .............................. GAACTGTCCTCTCTCAGTGTGCGTTTCCACCACCTC 1994895 30 100.0 36 CCACCACCTC .............................. GGTGGACGCCGTTTCCCTTCATGACGATAGCTCCCG 1994961 30 100.0 36 ATAGCTCCCG .............................. TCGAAACCGACCTGGTAACATTCACAGGCGACGGCG 1995027 30 100.0 36 GGCGACGGCG .............................. CATATACAATCACCCGCCGGGCCAGGGTGCCTGCCG 1995093 30 100.0 38 GTGCCTGCCG .............................. GGGGGCAAGGTGCCGGAGAAAAGAGGTAAAATGAAATA 1995161 30 100.0 37 AAATGAAATA .............................. GTTCCGATTTCCCGGCGAATCTCTTCTTGCGTGAATC 1995228 30 100.0 37 TGCGTGAATC .............................. ACCCGTTGAAAGCCATGGCCCAGGTTACTTTGCTGGT 1995295 30 100.0 35 CTTTGCTGGT .............................. ACGGCCGCGGTTGGAGAGTTCCTCTCTGCAGTCGA 1995360 30 100.0 39 CTGCAGTCGA .............................. TAACAACCTCCCCACCAGAAAATTAAACGAAAGGGGTAA 1995429 30 100.0 38 AAAGGGGTAA .............................. GGGTGCACTGAAGGAGCACATTCAACCGCAACAGGATG 1995497 30 100.0 35 CAACAGGATG .............................. GTAGTTGTTGCTGAGCCATTGCTGCCTGCTGGAGA 1995562 30 100.0 36 CTGCTGGAGA .............................. CGTCATAACCGTGCTGGACGTCACTGAGTTGCCGTA 1995628 30 100.0 38 AGTTGCCGTA .............................. GCAAACTGAGGCGCTTTTCACTGTCGGTCATGGCCTTC 1995696 30 100.0 37 CATGGCCTTC .............................. GGACGATTGATCCAATCGACTGGAAGGAAAGATATTT 1995763 30 100.0 36 AAAGATATTT .............................. TTGTATTAAGGAATAATTACTATTCTTTTACACTTT 1995829 30 100.0 36 TTTACACTTT .............................. CGTCATAACCGTGCTGGACGTCACTGAGTTGCCGTA 1995895 30 100.0 38 AGTTGCCGTA .............................. GCAAACTGAGGCGCTTTTCACTGTCGGTCATGGCCTTC 1995963 30 100.0 37 CATGGCCTTC .............................. GGACGATTGATCCAATCGACTGGAAGGAAAGATATTT 1996030 30 100.0 35 AAAGATATTT .............................. TTGTGTGCAATTTCAGGGTGATCAAGGAAGTTGAT 1996095 30 100.0 38 GGAAGTTGAT .............................. CGGCCGGTTCCGGAGCTGGCCGGGGATATGCCCCTCCT 1996163 30 100.0 38 TGCCCCTCCT .............................. GCAAGCAATGCTGGCCAGCACTTGGCTTGGTTAGACGC 1996231 30 100.0 38 GGTTAGACGC .............................. GTAATGAAAATGTCGGAAAGAGGACTTATTCCTGCGAA 1996299 30 100.0 35 TTCCTGCGAA .............................. TTCAAAATGTCGATGTCTGATTTCCCTTGTTCTTT 1996364 30 100.0 37 CTTGTTCTTT .............................. CGTGCCTGCTTCCGTCATCACGCCCTGCTGGACGTAG 1996431 30 100.0 36 CTGGACGTAG .............................. TCCAACGAGAGTTTCTTCCTCTTTTTTCCCAAAATC 1996497 30 100.0 35 TCCCAAAATC .............................. CTGCCGACCAAGGCGGAAGAATTCGGTTTGGTGCT 1996562 30 100.0 36 GTTTGGTGCT .............................. GCGTGCCTCATCTTTGACTTCTGAAAGGGGGCTTTC 1996628 30 100.0 37 GGGGGCTTTC .............................. TTGCGATTACCACTACACGTTCCCCCCTTTCGGTTTT 1996695 30 100.0 37 TTTCGGTTTT .............................. TGAATCCCGACGGCACGCGTACCGTCGTCGTAGTGCC 1996762 30 100.0 36 TCGTAGTGCC .............................. TTCCACGCGGCAGGGTCACTACCTGCGAATTCTTCG 1996828 30 100.0 38 GAATTCTTCG .............................. AATGGAAACCAGGTCGGCTACCGCCGAAGTCTTAGCCG 1996896 30 100.0 GTCTTAGCCG .............................. CAAAATAAAA ========== ====== ====== ====== ========== ============================== 116 30 36 GTTTCAATTCCTCATAGGCAGGCTAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.90,-2.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [51.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [130,190] Score: 0/0.18 # # Final direction: R [0,5.14 Confidence: HIGH] >NC_009454 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1998604 30 100.0 38 GAGGTATGTA .............................. CCAGGCCGCGGCAGTACTTCATCAACTGCTCATCGCGG 1998672 30 100.0 37 CTCATCGCGG .............................. GAAGAAACTTTTCTTTTTCTCCCTCTTTCTCTCTGCG 1998739 30 100.0 39 TCTCTCTGCG .............................. GTAAAAGAAATATTTAATTCTTTTGCCCTTTTATCAAAA 1998808 30 100.0 37 TTTATCAAAA .............................. GTTCGTTCTAGTGCAGAAATTGCACCAGAACGAGAAC 1998875 30 100.0 37 GAACGAGAAC .............................. GGATCGCTGAAACCCTTGATTTTACTGAGGCGACCAA 1998942 30 100.0 37 AGGCGACCAA .............................. TTTCCATGTAATATAACCCTCTGTTTGTCTTTTAGTG 1999009 30 100.0 36 TCTTTTAGTG .............................. GGGTGACCAGGTTAACCGCCATCTGGCCGCTGGACA 1999075 30 100.0 36 CCGCTGGACA .............................. GATATCGTCCATGTAGCGAATGTAATATTTCAGCCT 1999141 30 100.0 38 ATTTCAGCCT .............................. AGTAGTTTGGCAACATCTTCCTGGGTGAGTACCCGCGG 1999209 30 100.0 36 GTACCCGCGG .............................. CTTCATCCAGGCTTGGCGTTACAACACGGAACTTTT 1999275 30 100.0 38 CGGAACTTTT .............................. TTTATAACTCCAGCGGTTTGGCGAAATGTCGGTAAAAT 1999343 30 100.0 38 TCGGTAAAAT .............................. GTCTGCTTGCAGGCAGGTCAGGTTTTCCAGTCCCAGGG 1999411 30 100.0 40 AGTCCCAGGG .............................. TTAAATGTAAGTATGAAAGGTTATTATCTGAGCCGAAACT 1999481 30 100.0 38 AGCCGAAACT .............................. CGTGCCGGCCGCCAACATGGACAAGGCAGCAGCCCCTT 1999549 30 100.0 37 GCAGCCCCTT .............................. TCTGGAATGCATCGTCATGTATATGTTCACAAAGTAA 1999616 30 100.0 38 CACAAAGTAA .............................. AGTCAAAAGAAAGGGTGGAATGGATAAAGTTTTTTAGT 1999684 30 100.0 40 GTTTTTTAGT .............................. TAACACAAGGTTAAGGGGAACAGTAGATATGTTTGTAGTA 1999754 30 100.0 36 GTTTGTAGTA .............................. TTCCTGCTACAGGAATAAAGTAATTCAAATATCCTA 1999820 30 100.0 37 AAATATCCTA .............................. ACGGCAACAAAAGAAGGATATGAGACAAAAACGGTAA 1999887 30 100.0 37 AAAACGGTAA .............................. CGAAGTGCGCCGGCTGGCGCATCGGAAATTGATGTTC 1999954 30 100.0 34 ATTGATGTTC .............................. CCGGGGTTGTTGTAACCCCAGCGAACCGGTTCGA 2000018 30 100.0 38 ACCGGTTCGA .............................. GGCCCACGAAAGCCGCCACGCTTTCAACTGATCGTCAG 2000086 30 100.0 37 TGATCGTCAG .............................. CTTTCTATCGCCAGCACGTTTTGAGGAAGGTTCTCAC 2000153 30 100.0 35 AGGTTCTCAC .............................. TATCCGAAACCTGGATTCAAGAATGAGGCAACTGA 2000218 30 100.0 37 AGGCAACTGA .............................. GTTACAGGAACTACATATAGTGCGGAGATTTTCCATA 2000285 30 100.0 36 ATTTTCCATA .............................. CTCCTTCGGACAGAATGCCCCGATTGACGAGGAAAC 2000351 30 100.0 35 ACGAGGAAAC .............................. GAAACAGCTAGGGAGATTGCGCTGGGCGAGGAGAT 2000416 30 100.0 36 GCGAGGAGAT .............................. TTCTGCCGGTGGCCTCAATTGCTTCCTTTATCAACT 2000482 30 100.0 37 TTTATCAACT .............................. CTGCCGGAAAAACCGAGTAATTGAGAAAAAGTGTTGA 2000549 30 100.0 36 AAAGTGTTGA .............................. CTGTTAGAATCCAGATAAAAGCTATCATGATAATAG 2000615 30 100.0 38 ATGATAATAG .............................. GATTTACCGACACTGTTCACCCCTCCTTAGCCTCGCAG 2000683 30 100.0 38 AGCCTCGCAG .............................. CAACGATTTCCTGGTGACGTACAGCACCCGCCGCGCAC 2000751 30 100.0 34 CGCCGCGCAC .............................. CGAGGTGCAGCGGCTCGTTCCCGTCGCCGGCTAG 2000815 30 100.0 36 CGCCGGCTAG .............................. CATACTCAATTCCCAAGTATCAAGAGCGTTCAACAG 2000881 30 100.0 40 CGTTCAACAG .............................. TGTGCTTATATAGGCAGATCCATATTTCGCCCACAGGCAC 2000951 30 100.0 38 CCACAGGCAC .............................. GGTCTCATTTTTTTGTTTCTTCTTCTAGGATAGGCTGT 2001019 30 100.0 38 GATAGGCTGT .............................. CAATAAACAACTACCCTCTTTTCCAAAAAACTTTTTCT 2001087 30 100.0 35 AACTTTTTCT .............................. TAAGGTGGGTGTTGAGATTTATTAGATATATAGGT 2001152 30 100.0 38 ATATATAGGT .............................. CCCAGCCTAGCCTAGCCTAGCCAACCCAGGCCGCCTGT 2001220 30 100.0 35 GGCCGCCTGT .............................. AAAGTGTCAAGCTGATCGACTTGACACCAAAGTGT 2001285 30 100.0 37 ACCAAAGTGT .............................. TGTCGGTTGGGCGTGATGTCCTCCGGGGCGCGATAGC 2001352 30 100.0 36 GCGCGATAGC .............................. TATGCGGTGACGATACTTGCAGAAATAAGTCGGGGT 2001418 30 100.0 37 AAGTCGGGGT .............................. TGGGTCCTTCCCCAAAAGTGAGGGTCGGTTTGAACGG 2001485 30 100.0 38 GTTTGAACGG .............................. TCGTCGGCTACTACGGGGCGCTGGACCCTAGCCTGGGT 2001553 30 100.0 37 TAGCCTGGGT .............................. TTACCGTTACCGTTGCGTCGTTTCCGCGACGGTACGG 2001620 30 100.0 35 GACGGTACGG .............................. GCCAGAATGTAGACTGTCACCTGCCAGTTTAGTTG 2001685 30 100.0 36 AGTTTAGTTG .............................. TTAGCCTGACAGTTAGAACCGCGACGGGGCAGTTAG 2001751 30 100.0 39 GGGCAGTTAG .............................. CCAAGCGAAGGACCGCGAGCAAGAGTTGAAGACCGCGGT 2001820 30 100.0 35 AGACCGCGGT .............................. TACCCAGCCTGACCCCCAGGGTACCCCGCCAGGCA 2001885 30 100.0 36 CCGCCAGGCA .............................. TCCGCTGTGCTTGCCCCGCCATGCTCCTTGTTATGA 2001951 30 100.0 36 CTTGTTATGA .............................. CCGACGCCAAGACGGCGCCAAAATCCGGCTCGACAG 2002017 30 100.0 37 GGCTCGACAG .............................. CAAATGGGATAGAGGGTGTAGGGTATCATCCTGTAAG 2002084 30 100.0 35 ATCCTGTAAG .............................. TCGTTCGACTATGCTTGTGCCAGCATACCTATCGC 2002149 30 100.0 38 TACCTATCGC .............................. TTTCTCCCCAGGCCGGGACAAGCCCTATTCCAGCCGGG 2002217 30 100.0 37 TCCAGCCGGG .............................. TGTGTGGACATATGCGTATGCGTGTGGTATGATGTAG 2002284 30 100.0 38 TATGATGTAG .............................. CCCAGCCTAGCCTAGCCTAGCCAACCCAGGCCGCCTGT 2002352 30 100.0 36 GGCCGCCTGT .............................. GCGAGTCAACCAGCCAACCCAGTCGCCGACAGCCGC 2002418 30 100.0 36 CGACAGCCGC .............................. CGTGCGCGAACGTACCCTGCCCAGCGGTGACACGGT 2002484 30 100.0 39 GTGACACGGT .............................. TACCGCCGGCTGCTCGACGCAGCCCGGCGGTTCCTCCAG 2002553 30 100.0 37 GTTCCTCCAG .............................. GGGAAGTGCTTGAAACGTATATAGGCGAAGGAGGTAC 2002620 30 100.0 38 AAGGAGGTAC .............................. CTATGTCTGAAGTGCTAGAAGCCCCGAACGCGGCGGAA 2002688 30 100.0 35 CGCGGCGGAA .............................. GTAAAAGCAACCAAATAAACACACCGCCTTTTTAT 2002753 30 100.0 36 GCCTTTTTAT .............................. CGCCTTTGTCAGTGTGGCCCAGGCGGTAGCTGCGCT 2002819 30 100.0 36 TAGCTGCGCT .............................. ATGGATCGGACGCCGGAACAGTAAACAATTTTTCTG 2002885 30 100.0 34 AATTTTTCTG .............................. CTGGTCTACCACGTCCGCACCTCCCACACCGCTT 2002949 30 100.0 38 CACACCGCTT .............................. CGATAGGGTGTATCCCGTATTGGGCGATATTCCTATCT 2003017 30 100.0 37 ATTCCTATCT .............................. ACCCGGGGCGGCAGGTGCAGGATATCTTCTATCACCG 2003084 30 100.0 37 TCTATCACCG .............................. GGACTATGAAGCTGTCCTTCCAGGTACCCGACCACCG 2003151 30 100.0 36 CCGACCACCG .............................. GGCTAAAAAAGATTCTGTATTAACAATTGATGTCCC 2003217 30 100.0 34 TTGATGTCCC .............................. CCCCACAATCCAAAAACGTGATTTTCGCCGTTCG 2003281 30 100.0 37 TCGCCGTTCG .............................. ACTGCCTCGAAAAAGCATTCCGGGCTGCCGGCATTCC 2003348 30 100.0 35 CCGGCATTCC .............................. ACCCTAGACTAGCCTAGACTAGCCAGGCCGCCTGT 2003413 30 100.0 36 GGCCGCCTGT .............................. TTTTCCATCAACGTCACCTCCGCAGATTAGTCTTAT 2003479 30 100.0 39 TTAGTCTTAT .............................. GCCGTGGCCGGCCAACTCGGCGGCTATAACCTGCCGGGC 2003548 30 100.0 38 CCTGCCGGGC .............................. GTTACCGTTACCGTCGCGTCGTTTCCGCGACGGTACGG 2003616 30 100.0 37 GACGGTACGG .............................. GTAACCTGCCGCCACCCGCTCCAGGGGTTGTACTCAG 2003683 30 100.0 37 TTGTACTCAG .............................. CTGATCGACTTGACACCAAAGGGTACCCCGCCAGGCA 2003750 30 100.0 36 CCGCCAGGCA .............................. TAAGATATAGCGCTGCGGTTTGCCATCCTCTATGCT 2003816 30 100.0 35 CCTCTATGCT .............................. TCCGTGTGGGCCAGGGGAGAGCTGCAGGAGCACAT 2003881 30 100.0 38 AGGAGCACAT .............................. TGAGGAAATGCTTGGAGTGCAGAGGTTGGAGGAACCGC 2003949 30 100.0 36 GAGGAACCGC .............................. TCCTGCCTCGAAGAGTGCCCATTCTGCCGGGAGTTC 2004015 30 100.0 36 CCGGGAGTTC .............................. TTCCTGGATGCTGAAGCCGTCCTCAATAAGTTCCGT 2004081 30 100.0 37 TAAGTTCCGT .............................. GGAGTTCTGGCAGGAACTTTCCAAGCGGGAGGATCTT 2004148 30 100.0 37 GGAGGATCTT .............................. TAAACATCGGTGATCCCAGCCTCGCTGGTGATCTCCA 2004215 30 100.0 35 GTGATCTCCA .............................. TCACCACCAGCAAATAAAGACGGGTCATACTCACT 2004280 30 100.0 38 CATACTCACT .............................. TACCCGAAGGACGCAGAGCTTTTCGGGCAGAGCTTCCG 2004348 30 100.0 38 AGAGCTTCCG .............................. CTCTTCTCGGGGGTACTTCGGCGCTGATTGTTGCACCA 2004416 30 100.0 37 TGTTGCACCA .............................. CCTGTAATTTCTCAAAAGAATACTCATTTGCAGCAGT 2004483 30 100.0 35 TTGCAGCAGT .............................. GGAAATTATGAAATTTTTCGAGAAAAATAATTCTA 2004548 30 100.0 38 AATAATTCTA .............................. GAATCACTAAATTTATATGCTTGAACAGTACCTTGTTG 2004616 30 100.0 37 TACCTTGTTG .............................. GCCTGGAGAGGTTGACGATGCTAACCAATGTATCTAA 2004683 30 100.0 40 ATGTATCTAA .............................. TAACCGGGCTAGGCCTGAGCTGGTTTACAAAAAGAGGTGC 2004753 30 100.0 37 AAAGAGGTGC .............................. ATGGCCGAAACAGGACGCCGCAATGGAATTTATTTCA 2004820 30 100.0 34 ATTTATTTCA .............................. GCAAAATGCGGTTTGCGCCAACAATTACCCAATG 2004884 30 100.0 37 TTACCCAATG .............................. CCTCCACAGAGCCAGCACTGATTATCTGGCACGTCTA 2004951 30 100.0 36 GGCACGTCTA .............................. GTTATAGCTGATGGCATGTATGGGTTACGTGGCCGC 2005017 30 100.0 37 ACGTGGCCGC .............................. CGCACCTCCTTAGTCGGCAGATTGGCCACTCGTTCTT 2005084 30 100.0 35 ACTCGTTCTT .............................. GTGTTATTGGCCGCCGTCCATGTGCCGCGATACGG 2005149 30 100.0 39 CGCGATACGG .............................. TGCTTACTCGCTTGCAAAAGAACTTAGAGAACAAGGCTA 2005218 30 100.0 35 AACAAGGCTA .............................. TTCTTGCTCTGCCGATGTCAAGTTTGTTTTCTCGG 2005283 30 100.0 36 GTTTTCTCGG .............................. TTTCACCTGGCTTGGAAATATACTATCTTCTATATT 2005349 30 100.0 35 CTTCTATATT .............................. GATTGAACGGGCTGTGAAAAGCGCATCCAAGCGCG 2005414 30 100.0 37 TCCAAGCGCG .............................. CCTATCCCCTTCGCCTTTGCCTTCGCCTTTGCTTTGC 2005481 30 100.0 35 TTTGCTTTGC .............................. TTTACTGGATCAGTGGATGTATGGGGCAGGAGTAG 2005546 30 100.0 37 GCAGGAGTAG .............................. ATAGCTCCATCAATCGGGAAAACATAATTTAATACCC 2005613 30 100.0 36 TTTAATACCC .............................. ATCATATTTAGCTATATATGCTCTAACTCCTTTACT 2005679 30 100.0 36 CTCCTTTACT .............................. TGTCTATCCGGGAATGTCCCAAGAGTGCGGCCACTG 2005745 30 100.0 37 GCGGCCACTG .............................. TCCCATTCCTGGCGCACCTCAGTTGTCTGTAATTTTG 2005812 30 100.0 35 TGTAATTTTG .............................. TTATCGCCGCACAGCATGTAGAGGCCCACTCCTGA 2005877 30 100.0 39 CCACTCCTGA .............................. GTTGAAAACGCTGAGTGTCGGTACTACTACGGCACCCAG 2005946 30 100.0 37 CGGCACCCAG .............................. GTTTTCCGGTACAGAAAATCCAGGACCTGCCGGTGAT 2006013 30 100.0 36 TGCCGGTGAT .............................. CTCATAAGATACGAGCGAGCACTTGAGATAGTGAAG 2006079 30 100.0 36 GATAGTGAAG .............................. ATAATCAAACCAAAGGGGTGAGTAAGATGATCGGAA 2006145 30 100.0 38 ATGATCGGAA .............................. CAAGGTTAAATCTGCCAATTAGACATGCAAAATCCGCA 2006213 30 100.0 36 AAAATCCGCA .............................. GCAGGGTCGTTTCCTGCGAATTCTTCGCAGGCCGCC 2006279 30 100.0 36 GCAGGCCGCC .............................. GCTAGCCTGAAGGAGTGGAAAGAGGAGGTAGGATTC 2006345 30 100.0 36 GGTAGGATTC .............................. GTGGAAGAAGAGGAGGACGAAAGTCCTTCCTCCTCC 2006411 30 100.0 37 TTCCTCCTCC .............................. CGAACTTCTGGTACTCGTCTAGGCCGTCACCGTATCT 2006478 30 100.0 35 CACCGTATCT .............................. ATAAAGCTGGCGTCCTCTTCATCTGTGAAGATGAG 2006543 30 100.0 36 TGAAGATGAG .............................. CCCGACGGGACGCGCACCGTTACCGTACCGTCGCGG 2006609 30 100.0 35 ACCGTCGCGG .............................. TACGCCGCCAACGAGGTGGCCTGCTATAGGCTTTG 2006674 30 100.0 36 ATAGGCTTTG .............................. TCTAAAGCAGATGCAAGATACATAGAGGAATTGTTA 2006740 30 100.0 36 GGAATTGTTA .............................. GCGGCCCGGTGCGGTGCGTATCGGGCCAGTACCTCG 2006806 30 100.0 39 CAGTACCTCG .............................. GCACTTCAGACATAGTGCACATCCTCCTTTTTTCGGTTT 2006875 30 100.0 36 TTTTCGGTTT .............................. TTCCTCCTCCTAACCACCAGCGGAACAGGCAGGCTG 2006941 30 100.0 38 AGGCAGGCTG .............................. TGAAGGACGTTTCCGGGGCGCACGAGGCGTGGTCCGGG 2007009 30 100.0 36 GTGGTCCGGG .............................. CCCAGGCCCTGCCCATGACGCAGGCACAGAAGGATA 2007075 30 100.0 35 CAGAAGGATA .............................. CCTGATGCAGGTTTATGCCCCGTTGATGGATGTGG 2007140 30 100.0 38 ATGGATGTGG .............................. GTTTGCCAGTTGGTTCTAGCCAACTGGCGATCCGCCGA 2007208 30 100.0 37 GATCCGCCGA .............................. TGATATACGGGCTATTGGAAGCATTCACGGCGTCAAC 2007275 30 100.0 38 CGGCGTCAAC .............................. CTGGCAGGGGTATACTCTTAGGAATTCGTACTACTACG 2007343 30 100.0 38 TACTACTACG .............................. TGTCTTTGATTTCGTCTATTTCCCGGGCCATTAGCTTT 2007411 30 100.0 36 CATTAGCTTT .............................. TTAAAATTCTTCTTCAGGGTATAGGAGCCATAATCA 2007477 30 100.0 36 GCCATAATCA .............................. TATGAGCCTTGCGACGCCTATGGTTGCACTGAACGA 2007543 30 100.0 40 CACTGAACGA .............................. GAATAAATGAAACTTCTCATTCCCGAGACCAAGGTCAAAA 2007613 30 100.0 38 AAGGTCAAAA .............................. GGTTTATCAGTGTTTATGTATACCTCGCTGCTATTGAG 2007681 30 100.0 37 TGCTATTGAG .............................. TCGGAAATGGACGAAAATCCGTGATACATACCTCGAA 2007748 30 100.0 37 ATACCTCGAA .............................. CCATGAATCAAAACATTCGCCGCATCCACTAGTGCAG 2007815 30 100.0 36 ACTAGTGCAG .............................. CATAGAACGCAAACCAGATTAATGATTCACTGTCCG 2007881 30 100.0 37 TCACTGTCCG .............................. ATGAAACCCTTGTGTCGGCTATCCTGGAGAAGGTCTA 2007948 30 100.0 35 AGAAGGTCTA .............................. GCGCGCTGCCCAAGCTGACCAGGCAGGTTTACAGG 2008013 30 100.0 38 GGTTTACAGG .............................. TCATAAAATATATTTCGTGTCAATTTAATCTCTAAAGA 2008081 30 100.0 37 TCTCTAAAGA .............................. ATTGTGTCGTACCTATCCGCAATTCTCTTCTTAACGA 2008148 30 100.0 38 TTCTTAACGA .............................. CTTGCTACCCAAATTATCGACCTCACTTTCTGACAATT 2008216 30 100.0 36 TCTGACAATT .............................. TGTCAGCAGCAATGAGAGAGGCAGGGCTGGATCCGG 2008282 30 100.0 39 CTGGATCCGG .............................. TTATGATTCCCCGACGGTAATGTGGGAATGGGATGGTGT 2008351 30 100.0 36 GGGATGGTGT .............................. AATGTTGAATATCCTCATTGTGTCGTACCTATCCGC 2008417 30 100.0 38 ACCTATCCGC .............................. TATGCCAGCACCAAGCCCTGATTATTTATACCATCAGA 2008485 30 100.0 38 TACCATCAGA .............................. CCGAGGCCGAGGGCAGAAAACAACTACGTGCGCTTCGG 2008553 30 100.0 35 TGCGCTTCGG .............................. TCATCGCCGCGGCAGCAGTGAGAGAGTTCATGGTC 2008618 30 100.0 36 GTTCATGGTC .............................. AAGGTGGGCAAAGTGCATTAAGGGAACTCGCAGAAA 2008684 30 100.0 37 CTCGCAGAAA .............................. CAGTTTTGGGTTATGAACAAAAAATAGATGTACGAAT 2008751 30 100.0 36 ATGTACGAAT .............................. GGAGTTCTAATATTACAGGATTAAATATTTCATGTT 2008817 30 100.0 39 ATTTCATGTT .............................. TTTTATAGGCGCTGAAGTGAGGTTTTACATCAAAACCGT 2008886 30 100.0 36 TCAAAACCGT .............................. ATTGATGAAAAAATGCGGCAGGTAATATATGAAATA 2008952 30 100.0 37 ATATGAAATA .............................. CATGTCTTCAACCCAGGCCCGGGAATTCCAGGAATCG 2009019 30 100.0 35 CCAGGAATCG .............................. TCGGAATAAGGGAGTACCACTTGCTGCCCAGACCC 2009084 30 100.0 36 GCCCAGACCC .............................. ACAACGGGCTTTTGATGTCATTGCTGCGGGATTTCA 2009150 30 100.0 35 CGGGATTTCA .............................. ACCAGGAAACCAAGCCTTTTGTCCTGCGTGGTGAA 2009215 30 100.0 37 GCGTGGTGAA .............................. CCGGCTCGAGATACTTATCTGTGATTACCTGGCCGGC 2009282 30 100.0 36 CCTGGCCGGC .............................. GGAGTACAAATATATTAGTAGTTTTCCTTCTTACAA 2009348 30 100.0 37 CTTCTTACAA .............................. GTAAAGAGTTAAAAAGAAAATTGGATTTTATTTATGA 2009415 30 100.0 35 TTATTTATGA .............................. TTTATGAGGAGTTGGCAAAACCAGAGTGGCAACCA 2009480 30 100.0 38 GTGGCAACCA .............................. TTATAAAAGGAACAGGTGTTCTTACTATTGTAGATGGG 2009548 30 100.0 38 TGTAGATGGG .............................. TAACCTTGCTACACGATTTCCTTGTCTTTCTAATTCTT 2009616 30 100.0 37 TCTAATTCTT .............................. ACAAGGTAATTGTATATTATTTTTACTTTGTTATTGT 2009683 30 100.0 38 TTGTTATTGT .............................. TTCTTTGTTGTCATAGAGTGTTAACGAGGTTTTAAAAT 2009751 30 100.0 38 GTTTTAAAAT .............................. TTAGTTTGTTATTGTGAAATAAGCTGTCCAGTAACCTC 2009819 30 100.0 36 CAGTAACCTC .............................. TAAATAAAAAAATAGGAGGTTGTTTAAATGAAAGAA 2009885 30 100.0 36 AATGAAAGAA .............................. TGAAATGATGGCAGAAATATTAGAGAAAAAACTTAA 2009951 30 100.0 38 AAAAACTTAA .............................. TTCAAAAAGTGCTAGGGGACTAGCACTATTCTTCAATA 2010019 30 100.0 36 TTCTTCAATA .............................. TTAACACAAATAGTATAATAACAATAAAAGAGGTGA 2010085 30 100.0 36 AAAGAGGTGA .............................. TTAACACAAATAGTATAATAACAATAAAAGAGGTGA 2010151 30 100.0 39 AAAGAGGTGA .............................. CTATCATTCTTTCAGCTTATGAATGTCTTTCAGAAGGAC 2010220 30 100.0 38 TCAGAAGGAC .............................. GCCTTTTGTGTCAAGTAAAATTACTTGACACCCTCGTC 2010288 30 100.0 36 CACCCTCGTC .............................. AAGCCACAGAAGAAAAAGTTAAAATATTTTTAGAAA 2010354 30 100.0 37 TTTTTAGAAA .............................. CCTGTTGCACAAAATACTTATGGCATATGCTTAGACG 2010421 30 100.0 37 TGCTTAGACG .............................. CTGGTACAGCCGAATATAACTTAACCAATGGCACATA 2010488 30 100.0 35 ATGGCACATA .............................. TACCTGAGAAAATATTAGATAAACTAACAAAAGAA 2010553 30 100.0 35 AACAAAAGAA .............................. CTGGCCGGGTATTCTCAGCATACCCTGCGGGCGTA 2010618 30 100.0 38 TGCGGGCGTA .............................. CGGCGCAGGGAGTGGCGGAATTGATGTGTATGGTACGA 2010686 30 100.0 36 TATGGTACGA .............................. TCCGTTACCTCCGGATCGCAGTCCTTCGGTTCGAAG 2010752 30 100.0 38 CGGTTCGAAG .............................. GTGGGGTAGAACTGACAAATGGAAACGGTTTCCTCGAA 2010820 30 100.0 36 TTTCCTCGAA .............................. GCTTTACTTCCCATGCTTGTTATTGCATTTTTGGGA 2010886 30 100.0 36 ATTTTTGGGA .............................. TTAGCAGATAATGCACCTGGCCCATACATATCCTGA 2010952 30 100.0 36 CATATCCTGA .............................. GGATGTTCCCGGGAGTTACACCGGCGCGCAGGGCCT 2011018 30 100.0 36 CGCAGGGCCT .............................. GCAGATTGTCTACTTCGCCCCCCTCGAGCCAGGTCA 2011084 30 100.0 35 AGCCAGGTCA .............................. TTCCCTTCATCCATCAGGGAACGAATGGTTTCTAC 2011149 30 100.0 37 TGGTTTCTAC .............................. GTGGTGATTGGATGCCTTTACCGTGCTGCGGTTTTTG 2011216 30 100.0 38 GCGGTTTTTG .............................. AGAGTATCCAGGATTGTCTTAATGGCAGCATTCTCAGT 2011284 30 100.0 37 CATTCTCAGT .............................. CCCATGGCCTATCCTCCTTCCAAAATTGGGAATTTCA 2011351 30 100.0 40 GGGAATTTCA .............................. GAACGGCGCCGACAAGCTGCACGAGGCCCTGGCGTATTTT 2011421 30 100.0 35 GGCGTATTTT .............................. TCATCAATTAACCAGGTTTCAGTTTTTCTATACGG 2011486 30 100.0 37 TTCTATACGG .............................. TTTGGATCTTGTCGAGGTCTACCTCTTCCCCGCCCTC 2011553 30 100.0 36 CCCCGCCCTC .............................. AAACCCTTGCTTGCATTCCTCCCATGTTTTACGCAC 2011619 30 100.0 36 TTTTACGCAC .............................. GGAGGAGCAAAAAGAGCTTCTTGAGGTGATGCAGGC 2011685 30 100.0 39 TGATGCAGGC .............................. CTATGCCAGCGCTGAGCCGACCTTCGGCTACGTTGACAT 2011754 30 100.0 36 ACGTTGACAT .............................. CGATCCTGCTTTTAAGGGAGTCTCTGGATTTGATGC 2011820 30 100.0 36 GATTTGATGC .............................. ACGAAACGAAGCATATAGCATACGTCATCGGCGGTT 2011886 30 100.0 38 ATCGGCGGTT .............................. GGACGCCAGGGATATTACCAACGACCCCGGCACGCTGA 2011954 30 100.0 36 GGCACGCTGA .............................. TGCGCTGCGCCCCCATCCGACTGAAGCTCGCCCAGG 2012020 30 100.0 37 CTCGCCCAGG .............................. ACAAAACGGTCACGGTTAGCCTTGATGTCGCTTTCCT 2012087 30 100.0 40 TCGCTTTCCT .............................. CCAAGCACAAGGTTCCCTATTACGGCGCACTCTCCAGGGC 2012157 30 100.0 36 TCTCCAGGGC .............................. TTGGCCAGCCGGTCCGCGTCCGGGTTATCGTACCCA 2012223 30 100.0 38 ATCGTACCCA .............................. GTTGCACCCCGGTTTATATATCTAGGGTTTTTAGGCAT 2012291 30 100.0 38 TTTTAGGCAT .............................. CCCCTGGCTCTCCCGTCGCGTGCGGCGCAGTAGGAGCT 2012359 30 100.0 35 AGTAGGAGCT .............................. ATTTTTTCATATTTTTCACCTACCCTTTATGGAAT 2012424 30 100.0 38 TTTATGGAAT .............................. ATAAATTTGCAAAAATGTAAATACGTTATAAAAGTAAA 2012492 30 100.0 36 TAAAAGTAAA .............................. CCCTTAACAATTCTGCCATTTGTGCTGGTGTTTCTG 2012558 30 100.0 35 GGTGTTTCTG .............................. TTCCACATCCGCTTTAGTTTCTCCTACTTGAACGG 2012623 30 100.0 36 ACTTGAACGG .............................. CACAGTTTCATAATAAGTTTCTTCTTTTGGTTTTTT 2012689 30 100.0 36 TTGGTTTTTT .............................. GTAAATTTGGGAGGGGTGATGGACTTTATCATGAGA 2012755 30 100.0 36 TATCATGAGA .............................. CCGGGCTTAATCCGGAAATTGCCGGCGATTATGGTC 2012821 30 100.0 36 GATTATGGTC .............................. CCTGTTGTAATAACTTACCATACATCGAATTGAGTA 2012887 30 100.0 37 GAATTGAGTA .............................. TTTTAAAAAATAAAAAAATCCGGATTTTAGCCCGGAT 2012954 30 100.0 36 TAGCCCGGAT .............................. CTTTGCATTTGAAGTCCGAGATAAAAGCGAAGATGG 2013020 30 100.0 38 GCGAAGATGG .............................. CACCCTATCAGGCCTTTGTAGTCCTCAAGATTATTGAG 2013088 30 100.0 38 GATTATTGAG .............................. CGGCTGCTTGAATATCACCCGGAAGCCGGCTTCAGGGT 2013156 30 100.0 37 GCTTCAGGGT .............................. TTAACTTCGTTTCCGTTTTCGTCGAAGTATGTCCCGT 2013223 30 100.0 35 TATGTCCCGT .............................. TTAAACATTGAGAATTATTTATTCCAAAATGTTTG 2013288 30 100.0 40 AAAATGTTTG .............................. GCATTGCCGCCCTGGATGCCAAGGCTGATTATATTGAGCT 2013358 30 100.0 36 ATATTGAGCT .............................. GGCGGGACAGTCTTCGAACTGGTTTTCTCTCGGTCA 2013424 30 100.0 37 CTCTCGGTCA .............................. GTATTTTCCCGCCCTCCTGATACCAATCAATTTTCCC 2013491 30 100.0 39 CAATTTTCCC .............................. TGGATGAAGGTGACGACGTCCACGACCCGGCGAACTGGA 2013560 30 100.0 37 GCGAACTGGA .............................. ACGAGATAGGAAATCCTATTGAGACAATAACCGAGCG 2013627 30 100.0 37 TAACCGAGCG .............................. GCGCGACGGCATCATGAGAGTCCGGAACGGGCGGAAA 2013694 30 100.0 35 CGGGCGGAAA .............................. TCTTGTAATAACCGATAGTCTTCGGCCTCGACGTA 2013759 30 100.0 37 CCTCGACGTA .............................. AGGAATATATGAAAAATTTTGTGATTCCTGCGTTTGA 2013826 30 100.0 36 CTGCGTTTGA .............................. CTGGTCAAGTACTTCCCATCTAAAAGGACTTTCGGG 2013892 30 100.0 35 GACTTTCGGG .............................. AGAGTGATTGAATAAGGGCGAGAATGGGAAATGAT 2013957 30 100.0 37 GGGAAATGAT .............................. TCAACAATGCAACTCAATTTAAGTTGGAGTTATGGTG 2014024 30 100.0 38 AGTTATGGTG .............................. TCAGTTATCCTTTCTGAAGGTTGAATTATTACTACTTC 2014092 30 100.0 38 TTACTACTTC .............................. GCAATTCAGCCATTGCCGGGCACCTCCATACTCCTAAC 2014160 30 100.0 35 TACTCCTAAC .............................. CCGCACCAATAAACCACAATGTCGTATTCGTCACG 2014225 30 100.0 37 ATTCGTCACG .............................. TTTTCCCCTTTTAATTTAAATTCATTTATCATTTCTT 2014292 30 100.0 36 ATCATTTCTT .............................. TTTCCGGCATCATTACCGTTTTCCATCGGCTCTGCA 2014358 30 100.0 38 CGGCTCTGCA .............................. ATATTATGGGGAGGTAGTTTTCGAATGAGGAAAAGGGT 2014426 30 100.0 37 GGAAAAGGGT .............................. AAATTTGTGCTTTACCTGTCAAAGAACTGGCAGAAGA 2014493 30 100.0 36 TGGCAGAAGA .............................. AATCACATCCTGCACCATTTCTGAAGTACCATCAGG 2014559 30 100.0 37 TACCATCAGG .............................. GTCATAGAATGGGAGTGACATATTATTGGTTGTCAGA 2014626 30 100.0 GGTTGTCAGA .............................. AATACTTATT ========== ====== ====== ====== ========== ============================== 241 30 36 GTTTCAATTCCTCATAGGCAGGCTAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.90,-2.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [65.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [151,209] Score: 0/0.18 # # Final direction: R [0,5.14 Confidence: HIGH] >NC_009454 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2018258 30 100.0 36 GCTACTTGAT .............................. GGTGATGAAGTGGCCGAAAAACGCAGCCTTTTCCAG 2018324 30 100.0 38 CCTTTTCCAG .............................. CCTGCCGCTCACGTTTCCGGTCGCATAGCACCTAGATA 2018392 30 100.0 36 CACCTAGATA .............................. AATGTATTGTTTTGCACATGGTAACGTTCAGGCTGT 2018458 30 100.0 35 TTCAGGCTGT .............................. ACAAAGTTGCTTTAGTTTTATCCTGCGAATAAATG 2018523 30 100.0 36 CGAATAAATG .............................. CCTCGGGGAGCAGGTCAAAGAGCTGCTTGCACACTG 2018589 30 100.0 36 TTGCACACTG .............................. CTATTGATTTCATGGCGCACCCCCGTAGACCTTTTC 2018655 30 100.0 37 AGACCTTTTC .............................. AAATACCCTTTTAGAGGAGGATAGCGATGGGAGTTTA 2018722 30 100.0 36 TGGGAGTTTA .............................. AGTATGCGTTCATTATAAAACAACCCCCAATCTCCT 2018788 30 100.0 36 CCAATCTCCT .............................. ACCAAAGGGGTTTCCGCCCAGGTTCCGTGGGACCTG 2018854 30 100.0 36 GTGGGACCTG .............................. GGGTGAATCTAAATTGAGAATAATACCGGAGGAAAT 2018920 30 100.0 37 CGGAGGAAAT .............................. CAGACAATCCCATGATTGTCATGCCCAATTTTGAGCC 2018987 30 100.0 38 ATTTTGAGCC .............................. AAGCGCATGACGGCCAGAGTGCAGATATTCAGCACGTG 2019055 30 100.0 35 TCAGCACGTG .............................. CTCTATCGCGGCAATAAAAGGTTTTTCTGATGGTA 2019120 30 100.0 38 TCTGATGGTA .............................. TGGTTGAAATACTTTCTGGCTTTATCAGCTGCTTTTTT 2019188 30 100.0 38 CTGCTTTTTT .............................. AGCCATACATACCGCTAACGAGGGACTGGCGCAGGCTG 2019256 30 100.0 38 GCGCAGGCTG .............................. ACAAGGGAAGTTGCGCAGAAATCAAACACTTAAGGGGA 2019324 30 100.0 37 CTTAAGGGGA .............................. CGGCGCGCTGCCCAAGCTGGCCAGGCAGGTTTACAGG 2019391 30 100.0 39 GGTTTACAGG .............................. CACCGGGCGCCGGGCGGGGCTTGGAGGACGTCCGGAGGG 2019460 30 100.0 35 GTCCGGAGGG .............................. AGGACAAGATACCTGTGCCTTTCCAGGAAAACTGG 2019525 30 100.0 37 GGAAAACTGG .............................. AGGCCAGCCAGCCGATTGAGTTCATTGAGACTTTTTG 2019592 30 100.0 38 AGACTTTTTG .............................. GGCGGCGGAGGCTGCCCTATTGCGGAAGCGGCTTATAG 2019660 30 100.0 37 CGGCTTATAG .............................. CAAACTGCATATCTCTGTTTTTCGTCTGGATATTCAT 2019727 30 100.0 35 GGATATTCAT .............................. TATTCCGAAGTGCTCCACTTGCGCCGACATTTCTA 2019792 30 100.0 37 GACATTTCTA .............................. AACTAACGGGTGGCGCTAGTTCGATAAGAAATGAAAA 2019859 30 100.0 35 GAAATGAAAA .............................. GGCTTTTGCCGGACGTATAGACAATGCTACTAGTA 2019924 30 100.0 38 GCTACTAGTA .............................. GACAACATCGGCAACCAAATCGAAGCGCCGGCCGAGCG 2019992 30 100.0 38 CGGCCGAGCG .............................. CTTAAGGATTTTTGAAGGATTTAAGCTGAGCCAGAATA 2020060 30 100.0 35 AGCCAGAATA .............................. TAAATCAGAACACTAAACTTGCCGGTAAGTGTAGG 2020125 30 100.0 36 TAAGTGTAGG .............................. GGCTATCCGCTCAAAATCCTTTGCCTCATCTTTCGT 2020191 30 100.0 36 CATCTTTCGT .............................. TTCTTGGCTCTTTCCACATTGGCCGCCAGCTCGTCA 2020257 30 100.0 36 CAGCTCGTCA .............................. CTCGTAGTTCACTGCCAGCACCACCCCCGCCAATGA 2020323 30 100.0 CCGCCAATGA .............................. AAAACCCCGT ========== ====== ====== ====== ========== ============================== 32 30 36 GTTTCAATTCCTCATAGGCAGGCTAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.90,-2.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [207,398] Score: 0/0.18 # # Final direction: R [0,4.87 Confidence: HIGH] >NC_009454 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2024396 30 100.0 35 TTCTTCTACT .............................. TCCGCCCATTTCTCCGGTAGTTTCTCCAGGAGAAA 2024461 30 100.0 37 CCAGGAGAAA .............................. TGTGCTAGATTATTATTCTAGCACACTATAGAGGGAA 2024528 30 100.0 36 ATAGAGGGAA .............................. TATGTATATGTGTTTCAAAAAGTGCTATGATAGCAC 2024594 30 100.0 36 ATGATAGCAC .............................. CCCTTTAGATATCTCCGTCAGGGGGGGTAGTTATTG 2024660 30 100.0 36 GTAGTTATTG .............................. CGCAAAAACAATCCTCTTTTACCGCCCTTCAACGAG 2024726 30 100.0 38 CTTCAACGAG .............................. AAATACTCCCGACAAGGACACCCCAAAGTGTCTTTATA 2024794 30 100.0 37 TGTCTTTATA .............................. GAAAAAGTACAACATAAAGTGAAAAATATTTATAAAC 2024861 30 100.0 38 ATTTATAAAC .............................. GGATATAGTTGGGCAGACTCATTTCCTCACCTTTTTCA 2024929 30 100.0 37 ACCTTTTTCA .............................. GCGCAGCGGTTACCAATATCCGGTTGACGCTAGGAGA 2024996 30 100.0 39 CGCTAGGAGA .............................. AGGGAAGTTTTTTCGTATACTGACTTCATACCCACTGGA 2025065 30 100.0 37 ACCCACTGGA .............................. GGTATTGGCAACAAGGAGATTGATGGGAGGTGATGTT 2025132 30 100.0 37 AGGTGATGTT .............................. TTTTTTGCACTGTATCAGACGATATATGTTGGTCCGG 2025199 30 100.0 37 GTTGGTCCGG .............................. GGATATTCCCAGGAACAAGTTGCCCGCCTCCTGGGAA 2025266 30 100.0 36 CTCCTGGGAA .............................. TTCAGGTATTGAACTTATCTTGCTCAGACCTGCACA 2025332 30 100.0 36 GACCTGCACA .............................. GGTCGTACCATTCGGCGTATTTGGAAACGGGAATAT 2025398 30 100.0 36 ACGGGAATAT .............................. TGCAAAAATGGATATTAAGTCTTGTAATTGGTGGTT 2025464 30 100.0 35 ATTGGTGGTT .............................. ATAATTTCCAAGAAAAAAAGTTAATACCTTTTTCA 2025529 30 100.0 38 ACCTTTTTCA .............................. AAATCCTGCTATTTGGAAAGAGTGGTTAAAGGACCCGG 2025597 30 100.0 34 AAGGACCCGG .............................. TGTATTACGAATTGTAAACAAAGCCGCCAATAGC 2025661 30 100.0 37 CGCCAATAGC .............................. TTTTCTGCGAACGCTCCCCTTTGTCACCCAGAACCGG 2025728 30 100.0 36 CCAGAACCGG .............................. AAGTCTATAGCAAATTGTATTAAATTCTGATACAAT 2025794 30 100.0 37 CTGATACAAT .............................. GGTTAGAGGATTGGTGGGAGAGATAGCAGAGAAAGCA 2025861 30 100.0 37 AGAGAAAGCA .............................. ACCTTTAGTTATTTGTTTCCATGCCCTTTTTATCCAG 2025928 30 100.0 35 TTTTATCCAG .............................. AAATTTTCTATTTATCATTTTTTCACTCTTTTTAC 2025993 30 100.0 39 CTCTTTTTAC .............................. TGAAAACTTACCCACCTCTTTACCAAATTTCCACCACTG 2026062 30 100.0 38 TCCACCACTG .............................. GTTATCCCCATTTTCCCCAGGGTTATCTCCATGTTCTT 2026130 30 100.0 36 CCATGTTCTT .............................. ATAACATCCTCGGCAACTAAAATTGGACACCTACCG 2026196 30 100.0 37 ACACCTACCG .............................. CCGGCATCTTCTCCGACGCGGCTACCGCGATTGACCC 2026263 30 100.0 37 CGATTGACCC .............................. CGGCGCGCTGCCCAAGCTGGCCAGGCAGGTTTACAGG 2026330 30 100.0 35 GGTTTACAGG .............................. CGCTCCGCAGGGGTCAGGTAAATCCCTTTTTTAGC 2026395 30 100.0 37 CTTTTTTAGC .............................. ATATCCGGCATGCGCCTTACGAACCGGGTGAGAACGC 2026462 30 100.0 36 GTGAGAACGC .............................. CCAGTCAAACCAGACATCATCGAGTGTTTGCCCGGT 2026528 30 100.0 TTTGCCCGGT .............................. CCATCTTGT ========== ====== ====== ====== ========== ============================== 33 30 36 GTTTCAATTCCTCATAGGCAGGCTAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.90,-2.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [184,177] Score: 0/0.18 # # Final direction: R [0,4.87 Confidence: HIGH] >NC_009454 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================= ====== 2102341 33 100.0 34 GGTGGGAAGA ................................. CAGAGGTGACGACATTGCAATACAACGAGTTTCT 2102408 33 100.0 33 ACGAGTTTCT ................................. AGTAGGTTTCGGGCAATTCCGCACCAGTGTCGC 2102474 33 100.0 34 CCAGTGTCGC ................................. ACTTTAACCTGCAAGATTGTGTGGGCCAGGTAAT 2102541 33 97.0 GCCAGGTAAT C................................ TGTATATGTT ========== ====== ====== ====== ========== ================================= 4 33 33 TGTTTCAATCCACGCTCCCGCACGGGGAGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [6,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-5.70,-5.90] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [36.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [563,175] Score: 0.18/0.18 # # Final direction: R [0.59,4.77 Confidence: HIGH] >NC_009464 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1749557 29 100.0 31 NNNNNNNNNN TT............AT.C........C.A TGATATTATCTTTTCATAGAGCGCCTACTGA 1749617 29 100.0 32 NNNNNNNNNN ............................. TCGCAACAATCCCTATATATCCACGCCAACGA 1749678 29 100.0 32 NNNNNNNNNN ............................. GCCACATCGGTGCCTGCGATGTTCGGCTCGAT 1749739 29 100.0 32 NNNNNNNNNN ............................. ATAGTTATCGCGAGGGGATCCGGAGCGGCCGG 1749800 29 100.0 32 NNNNNNNNNN ............................. GCCCTCTTGAGGGTGGCAACGCCCCTGGATAT 1749861 29 100.0 32 NNNNNNNNNN ............................. GGCGAACGTATGAACCTCATAGCTGACTGTCC 1749922 29 100.0 32 NNNNNNNNNN ............................. CCGCCAGTTCTCCATGACGGCCCTGATCTTCG 1749983 29 100.0 34 NNNNNNNNNN ............................. GGAAGTAGGCCCCGATACGATTGAGCAGCTTACG 1750046 29 100.0 32 NNNNNNNNNN ............................. ATTAGACGACGTACCGGGATTTGGTTGCGTTA 1750107 29 100.0 33 NNNNNNNNNN ............................. TGAGGCTGTCATACGAGAACGAAGAGTCGACAT 1750169 29 100.0 32 NNNNNNNNNN ............................. TATCTGGGTCTTCATGTTGAACCGTGCGCCAT 1750230 29 100.0 32 NNNNNNNNNN ............................. CAGGCGTCGAACTCTGCCTTCTCGTCTTTGGC 1750291 29 100.0 32 NNNNNNNNNN ............................. CTATCTCTTTTGAAAGATCGTAGTTGCTCATT 1750352 29 100.0 32 NNNNNNNNNN ............................. TTGAATTGCTGGCCGTCCGAGATTGGGGTGAT 1750413 29 100.0 32 NNNNNNNNNN ............................. GCACTTGCGGGAATGTTCGGAGCTGCCGCCCT 1750474 29 100.0 32 NNNNNNNNNN ............................. CAACCGAAATCATAAACGCACAGATTGCGAAC 1750535 29 100.0 32 NNNNNNNNNN ............................. ATTACAGCCCCGATCCGAGTCTTACACTCGTA 1750596 29 100.0 32 NNNNNNNNNN ............................. CGCGTCGCCTACCTTCGTAAGGACAGGGACAA 1750657 29 100.0 32 NNNNNNNNNN ............................. TCGTCTGGTCCGCTAAGTCCTACCGCATTAAC 1750718 29 100.0 32 NNNNNNNNNN ............................. GCGACGTCTGCCCTAAAAATTCTCCGGTACAA 1750779 29 100.0 32 NNNNNNNNNN ............................. GCGGTCGGGGCGTCGTGGGTGTGGGGCGTCGC 1750840 29 100.0 31 NNNNNNNNNN ............................. TTTTCACGGAAGCGCTACCTGTCCAGGCGTA 1750900 29 100.0 32 NNNNNNNNNN ............................. TCATAGGCTCCCCCGTACATCGGGAAATGGTA 1750961 29 100.0 32 NNNNNNNNNN ............................. ATAGGGTATCAAGTAAAAGTTTTAGCATATGC 1751022 29 100.0 32 NNNNNNNNNN ............................. TCAGATTAGAAGGCTGTAAGTCAGTCTTCTTT 1751083 29 100.0 32 NNNNNNNNNN ............................. GGGGTTTTCATTATCACCCACGCCTGCTCCAT 1751144 29 100.0 32 NNNNNNNNNN ............................. GACACAATGGACATATTAACTTACCATCATGT 1751205 29 100.0 31 NNNNNNNNNN ............................. GGCACAACCACCAGTTATCGATGAAGACAAA 1751265 29 100.0 32 NNNNNNNNNN ............................. GGCATGTTGACCGTGAACGATACGTGGTCCGG 1751326 29 100.0 32 NNNNNNNNNN ............................. CTGCGCCTGCACAGCTGCAGGTGTAATCATCG 1751387 29 100.0 32 NNNNNNNNNN ............................. TTGTCGTGCCAGGCTGGATGATGCTTGCCGGT 1751448 29 100.0 32 NNNNNNNNNN ............................. TCATTATATAACTGGAAAATTTTTGTGTTAAA 1751509 29 100.0 32 NNNNNNNNNN ............................. GGCAGGATAGATTCAATTGATAGTATGCATCC 1751570 29 100.0 32 NNNNNNNNNN ............................. CTGTACCTCCTTGTTGTCATGATCTGCTGCTT 1751631 29 100.0 32 NNNNNNNNNN ............................. ACGGGCTTCGATTTCCAGGTACTTTTGATACC 1751692 29 100.0 33 NNNNNNNNNN ............................. GAGAATAGTTAAAGAATACCCAATAATAGCGGC 1751754 29 100.0 32 NNNNNNNNNN ............................. TTTGGGCATTTATCTATACACTTGCCGCCATT 1751815 29 100.0 32 NNNNNNNNNN ............................. TTCCTCCGCTTCAACACTCTTAAGATAGCTTT 1751876 29 100.0 32 NNNNNNNNNN ............................. CGCTGACGGGGCAGTATCCCACGCAAGAGCGC 1751937 29 100.0 32 NNNNNNNNNN ............................. CGCTGCCAGCAGCCTATTAGTCAGCTCTTGCT 1751998 29 100.0 33 NNNNNNNNNN ............................. GGGACGCTTAACCTCAATACCCACAAATACACC 1752060 29 100.0 32 NNNNNNNNNN ............................. GCGTAGTCGGTAGGAAGGTCTATCGCAAAGAA 1752121 29 100.0 32 NNNNNNNNNN ............................. ATTTGAAGCATCGTAGTTTCTGCCGGGGCCAG 1752182 29 100.0 32 NNNNNNNNNN ............................. GAATGGGCAGAGCAGCAGTCATTCTTTGATGA 1752243 29 100.0 32 NNNNNNNNNN ............................. ATTATGAGTCAGCATGGCGACATGACCAGGAA 1752304 29 100.0 32 NNNNNNNNNN ............................. GGAAAGGTCACCAATAGCAACGGACAGGCCAC 1752365 29 100.0 32 NNNNNNNNNN ............................. CACCACTGGCTTAAGCCAGTTCTTTTGTGTTC 1752426 29 100.0 33 NNNNNNNNNN ............................. TAACAGAATTGCAATGGATACACGGTTCATCAA 1752488 29 100.0 31 NNNNNNNNNN ............................. TTGTTTGTACAGGTGTGCTTCACGCTTAACG 1752548 29 100.0 32 NNNNNNNNNN ............................. CATCTTATGAGCCTGATCGAATAACTGGCTTG 1752609 29 100.0 32 NNNNNNNNNN ............................. TCTCTAGGTTGAATCTTCCACTGTGCAACTTT 1752670 29 100.0 32 NNNNNNNNNN ............................. ACTATCTTCATTTGTTCCTGAAGCTTTTCAAG 1752731 29 100.0 34 NNNNNNNNNN ............................. GGGCAAAGGACGGCACTAACGTTCTCGCTCACGG 1752794 29 100.0 32 NNNNNNNNNN ............................. TTTTTATCAGTAGTGATCCTGCGGATATCGTT 1752855 29 100.0 33 NNNNNNNNNN ............................. GTGATGGTCGTCTCCCGGTTCCTGCGCTACTAT 1752917 29 100.0 32 NNNNNNNNNN ............................. GTTTTGGAGCATTTAAAATAATCCTGTGTAGT 1752978 29 100.0 32 NNNNNNNNNN ............................. TCCGGCTTCTTCCATAGCTTTAACACTCTGAT 1753039 29 100.0 32 NNNNNNNNNN ............................. TCAGCGATCTCTCCCCGCTTGATCTTAGTGAC 1753100 29 100.0 32 NNNNNNNNNN ............................. TGGGCTTCGGCTCTGGCCGTCCTCTCCATTCT 1753161 29 100.0 32 NNNNNNNNNN ............................. TGTATGTATGATACTAACACCAACCGATGCCG 1753222 29 100.0 32 NNNNNNNNNN ............................. GTCCCTACACTATTTCCGTTAATGTCTCGGAT 1753283 29 100.0 32 NNNNNNNNNN ............................. GCGCTGGCTTGATACCTCAATGCCATCAAGGT 1753344 29 100.0 32 NNNNNNNNNN ............................. TTCTTACGTGCAGCCTTAGTCTTAGCTCTCAT 1753405 29 100.0 33 NNNNNNNNNN ............................. ATTTAATTTTTAAATCTATTAGTGGGTGCTGTC 1753467 29 100.0 32 NNNNNNNNNN ............................. TATGCCGGACTGCATCTTAAGCACAGGGTATT 1753528 29 100.0 32 NNNNNNNNNN ............................. AAAGCCGTCTTTGGTAAACTGGTTTGGTGTTA 1753589 29 100.0 32 NNNNNNNNNN ............................. GTTTAATAGGAGGCAAACACGTTTTTTAGCTA 1753650 29 100.0 32 NNNNNNNNNN ............................. TCTGCGACCGGCGAGACGGATAGACGGCTTAA 1753711 29 100.0 32 NNNNNNNNNN ............................. GCCGCTGCGTGAATCTGCTCCTTAGTAACTTC 1753772 29 100.0 32 NNNNNNNNNN ............................. TGTTTCCTTACCAGCATGTTTTCGGCGGCATA 1753833 29 100.0 32 NNNNNNNNNN ............................. GAATACGCAAAAAATTAATTTTTATCTTGTAT 1753894 29 100.0 32 NNNNNNNNNN ............................. TCGATTACTGTGTCCCTTAACTCGTACCAACT 1753955 29 100.0 32 NNNNNNNNNN ............................. GTATGGGAAAGGCAATTTCACGAACACGCTAA 1754016 29 100.0 32 NNNNNNNNNN ............................. CAAGGCTCCGCAGTGCTCCGCTGCGAGACATG 1754077 29 100.0 32 NNNNNNNNNN ............................. GCGTCAGGTATGGCCAGATTTGTGACTTGTGT 1754138 29 100.0 32 NNNNNNNNNN A............................ GCTACCCCAAGATACGCTATTGAATTATAATA 1754199 29 100.0 32 NNNNNNNNNN ............................. GTGACAGTAACATCGTCTAACCCGCTATTGTA 1754260 29 100.0 32 NNNNNNNNNN ............................. GTCCAAGCATATACTATTTCTCCTATCGCTTG 1754321 29 100.0 32 NNNNNNNNNN ............................. CCGCTTATCCACTATCGTCTCGGTGACGTCCT 1754382 29 100.0 32 NNNNNNNNNN ............................. GTTCAGATATTTCAGGATGTTGTCGAACGATT 1754443 29 100.0 32 NNNNNNNNNN ............................. GGTGATGCCTACGATGCCGGGGCCGATTGCCG 1754504 29 100.0 32 NNNNNNNNNN ............................. CAATATTGTACATCTTCATATCAATCACCATT 1754565 29 100.0 32 NNNNNNNNNN ............................. TAACTACAAATTATACTTGCGTTAAGGTACAC 1754626 29 100.0 34 NNNNNNNNNN ............................. GCTCATACACTCGTTCCATCTCGGCCATACCGTC 1754689 29 100.0 32 NNNNNNNNNN T............................ GATTCTACGTAGGTCGTACTCCAATCAAATAA 1754750 29 100.0 32 NNNNNNNNNN ............................. TCGCAGTCTTATTACTGCTCCTGACGGATATA 1754811 29 100.0 32 NNNNNNNNNN ............................. CCAATAGCCTGATTTTGCAAAGTCTTAATGGC 1754872 29 100.0 32 NNNNNNNNNN ............................. GCGCAGGCCCGAAGTTGCAGCGCTCGGCCCCC 1754933 29 100.0 32 NNNNNNNNNN ............................. GACACGCTTCTGCACCGTATCCACGGGGATAC 1754994 29 100.0 32 NNNNNNNNNN ............................. TGCTCAGGCCCAAGAGTGGTAGCAACTATAAG 1755055 29 100.0 32 NNNNNNNNNN ............................. TGATTGCACCAAGTAAAACACCAATAAGTAAA 1755116 29 100.0 32 NNNNNNNNNN ............................. CTTATGAAGCTAATCTCATGGCTTTTCAGGAA 1755177 29 100.0 32 NNNNNNNNNN ............................. ATACTAATGGAAATCAGGTAATTGCACAGTAT 1755238 29 100.0 32 NNNNNNNNNN ............................. ATCTCCGCCACGATATCACCACTACAGACGAC 1755299 29 100.0 32 NNNNNNNNNN ............................. GGATCTAAAAGAGCTACACGGTAAGTGCCCGG 1755360 29 100.0 32 NNNNNNNNNN ............................. GAGGGCCTTATTAATGTAGATGCCCTGAACGC 1755421 29 100.0 33 NNNNNNNNNN ............................. GCCGTCTCGTATTAACTCCTGTATGTACCAGCT 1755483 29 100.0 32 NNNNNNNNNN ............................. TATGATTTTGCCTCTTTCAATATCTTCAACGA 1755544 29 100.0 32 NNNNNNNNNN ............................. TGGGTGGGGAACAGGTAACCAAAACTCAACAT 1755605 29 100.0 32 NNNNNNNNNN ............................. GATCCGGCCAGACAAAACACTTTGGGGTAAAA 1755666 29 100.0 32 NNNNNNNNNN ............................. CAGTTTGCTCTATGATATAATCGGCCTGTTCT 1755727 29 100.0 32 NNNNNNNNNN ............................. CATTGCGTATCTCATCGGATGCGGTCAGGCTT 1755788 29 100.0 32 NNNNNNNNNN ............................. GTCTAATATTATTTCAAAATTATTTCTCTTAA 1755849 29 100.0 32 NNNNNNNNNN ............................. ATCGGGGCCGTGGGGTAGATTCATCCCACCGG 1755910 29 100.0 32 NNNNNNNNNN ............................. GGCCTTAGCTCCCGCCATGAGCTTCTTGAGGT 1755971 29 100.0 32 NNNNNNNNNN ............................. TTAGTGGCGTGAGCCTCTTCTCCCTGAGCTGC 1756032 29 100.0 32 NNNNNNNNNN ............................. GCACAGTACGTGAAGACCCCGGGTGGGGTCTA 1756093 29 100.0 33 NNNNNNNNNN ............................. CACGGCGCCGGGGACGGGGGCACTACGTTCAAC 1756155 29 100.0 32 NNNNNNNNNN ............................. CTTATACGGTGTGCCGTCAGGTCTAACTCCGT 1756216 29 100.0 32 NNNNNNNNNN ............................. GGCTTTGATTATCGTACCATCCGCCGCCCATT 1756277 29 100.0 32 NNNNNNNNNN ............................. CCCTCGCGCTCACTCTGAAGAATGCTCTGTAA 1756338 29 100.0 32 NNNNNNNNNN ............................. GCACCGGCAGTATTCGGTTATGATTTGCTCTG 1756399 29 100.0 32 NNNNNNNNNN ............................. TGATAGTGGTTATGATCCTATCGGATTGATTA 1756460 29 100.0 32 NNNNNNNNNN ............................. AATCTGTTTAATGGTGACCGGGTTACTGATCA 1756521 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 115 29 32 CGGTTCACCCCCACGCCTGTGGGGACTTT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-10.90,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [279,29] Score: 0.18/0.18 # # Final direction: R [0.18,1.05 Confidence: HIGH] >NC_009468 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 35116 29 100.0 32 NNNNNNNNNN ............................. CCGCCTGGGAGGATATGGAGCGCTGGATTGAT 35177 29 100.0 32 NNNNNNNNNN ............................. GCGGCGGCGCAATACTACGCAGCGGTGAAAGC 35238 29 100.0 32 NNNNNNNNNN ............................. CGAAAATGGCGTTCTGGGAGGCGCTGACGAAT 35299 29 100.0 32 NNNNNNNNNN ............................. ATGTGGTGGCAAGTGACGGGCCGAGTCTGGAA 35360 29 100.0 32 NNNNNNNNNN ............................. ATGCGCAAGGCGCGCAAGCGCAAGGGCAACAG 35421 29 100.0 32 NNNNNNNNNN ............................. GTCATTGATCTGTCGCCAGTGGCCGTCGTCCG 35482 29 100.0 32 NNNNNNNNNN ............................. CTTCGCGCCCTGATCGACATGCAGCGCGAGGT 35543 29 100.0 32 NNNNNNNNNN ............................. ATCTCCTTGTCTATCTAAAAACTAGCACAGAG 35604 29 100.0 32 NNNNNNNNNN ............................. TTTTTTGAACAGCCGGAATTGATTGAACAGTT 35665 29 100.0 32 NNNNNNNNNN ............................. CGAATGAGGAATTCGCCGCGTTCTATACGCTC 35726 29 100.0 32 NNNNNNNNNN ............................. TGTCGCAATCCGGAGTCGGCTCGCTCCGCCAT 35787 29 100.0 32 NNNNNNNNNN ............................. GGGTATACGTGCTACCGGCGGGGGCTGGAGTA 35848 29 100.0 32 NNNNNNNNNN ............................. TGGCCGATGCTCGCGCAGAAAGTGGGCGTGTG 35909 29 100.0 32 NNNNNNNNNN ............................. CCGTCAAATCGATGGAGCCCGGTCACTGTTGT 35970 29 100.0 32 NNNNNNNNNN ............................. TAAAGCGCGGCGTCCCCCCGCGCCGCAAAAGC 36031 29 100.0 32 NNNNNNNNNN ............................. GAGCGCAAGCACCTGGCGTCGGAGATTTGGGC 36092 29 100.0 32 NNNNNNNNNN ............................. GGTGGAAGATGGTTTGTCATTCGCAGAGCCCA 36153 29 100.0 32 NNNNNNNNNN ............................. CCGGAAGGGACGGGCTCGCATGCCACGGGCAC 36214 29 100.0 32 NNNNNNNNNN ............................. GCAGAGGCAGCAGAGAGGCGATGCACCGAATT 36275 29 100.0 32 NNNNNNNNNN ............................. GATATCGTTGCCAGACGGCGCACGCTCGCAAT 36336 29 100.0 32 NNNNNNNNNN ............................. ACAGACCAGAGGAGGCAAGAGAGCGCGACAGG 36397 29 100.0 32 NNNNNNNNNN ............................. ATCGTCGATCTAACGACACCGCCAACGATGTT 36458 29 100.0 32 NNNNNNNNNN ............................. GGCGCCAACGGTTGCGTCTTGTTTCTCGTCTA 36519 29 100.0 32 NNNNNNNNNN ............................. GCGGACCCGCTATTACTGACCTGGCTCGATCG 36580 29 100.0 32 NNNNNNNNNN ............................. CGACGCCGGACGCTCGCGAAATCGCCTTTGTG 36641 29 100.0 32 NNNNNNNNNN ......T...................... ACGCCGGTTCGCGGGCGCACAGTGCTTGTGCA 36702 29 100.0 32 NNNNNNNNNN ............................. CTCGCCGGGCTGTGGAAGAAAGCCGGCCCCTG 36763 29 100.0 32 NNNNNNNNNN ............................. TCGTGCAGATCGTGGTTGACAATCCAGGCAGC 36824 29 100.0 32 NNNNNNNNNN ............................. CCGTTCGTCTGGATCGTAGATCGCGAAATGAC 36885 29 100.0 32 NNNNNNNNNN ............................. GATTGTCAGGTAATCGCCGAGCGTCTGATAAA 36946 29 100.0 32 NNNNNNNNNN ............................. GCGCTTCGAGCGCCGCCGGGCCACAAGGTTGT 37007 29 100.0 32 NNNNNNNNNN ............................. GTGCGGTTCTGCACCGGGCCGAACGTGGCCGC 37068 29 100.0 32 NNNNNNNNNN ...G......................... TCAGCGTATCGCTCGCGGCGGCAACGTGGGTA 37129 29 100.0 32 NNNNNNNNNN ............................. TTTACGTTGTATTGGGTGCGGCGAGACGGGCA 37190 29 100.0 32 NNNNNNNNNN ............................. TCCTGGGTGAGCGAGACGGGCACACTCACGGG 37251 29 100.0 32 NNNNNNNNNN ............................A TCCGGCATCGTTTCCGCGCCGGCATTCACGCC 37312 29 100.0 32 NNNNNNNNNN ............................. CCTGACACCGGCGACACGGCCCTCAGCCGCTC 37373 29 100.0 32 NNNNNNNNNN ............................. AACGTGACAACGCCCGTCGCCTGCGCGGTGAG 37434 29 100.0 32 NNNNNNNNNN .C........................... ACGCGGGGGCTTCGATAGGCTTGGTAAGCTTC 37495 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 40 29 32 GTGTTCCCCGCAGGCGCGGGGATGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [4,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [65.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [358,590] Score: 0/0.18 # # Final direction: F [0.68,0 Confidence: HIGH] >NC_009457 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2836101 28 100.0 33 NNNNNNNNNN ............................ CAAATGGCTCAATGCGCGATTGACTACGTTACT 2836162 28 100.0 33 NNNNNNNNNN ............................ CAATCAACGCACTAGACAACGCCCAAATGAACC 2836223 28 100.0 33 NNNNNNNNNN ............................ CAACGCTATGCCCGCTAAAATCAGTAAACAAGA 2836284 28 100.0 33 NNNNNNNNNN ............................ TATATTTCGCTCCCGTCTCGTCAACTAAAATCA 2836345 28 100.0 33 NNNNNNNNNN ............................ CTTCAAATAAGTAACCAGCCTCTGACGCTGTTA 2836406 28 100.0 33 NNNNNNNNNN ............................ CACCGCTAATCATGGTGGAACGAACGCCATCAA 2836467 28 100.0 33 NNNNNNNNNN ............................ TGATTTTGGAAGTAATGGGAACTGAGCGTTAAG 2836528 28 100.0 33 NNNNNNNNNN ............................ CCAAAAACCTACGCGGTTTTAAATGGATTCGAC 2836589 28 100.0 33 NNNNNNNNNN ............................ TATCTTGGTTTTGCAGGTTGTTAATCTCAGCGT 2836650 28 100.0 33 NNNNNNNNNN ............................ TGATTGGTTCCAGTTTATGACAAGAACCAACAC 2836711 28 100.0 33 NNNNNNNNNN ............................ TACATTGGCAAGACGTTTGTTTTTCGCTGTGTA 2836772 28 100.0 33 NNNNNNNNNN ............................ CGACTTTTGCATCATCGATGTACGGAACGCTAG 2836833 28 100.0 33 NNNNNNNNNN ............................ CACTGAGATTGCGTGTCGCCGACTTGCGCTTGC 2836894 28 100.0 33 NNNNNNNNNN ............................ TAGACTATCAATGTGCGCTTGCAAGTCTTTTAA 2836955 28 100.0 33 NNNNNNNNNN ............................ TTGATCGCTCTGAAATTGTGACTTGTTTTGTTA 2837016 28 100.0 33 NNNNNNNNNN ............................ TAGATCTTAATTGTTCGCGTTGAATGGGAAATT 2837077 28 100.0 33 NNNNNNNNNN ............................ CAGATTGTAGATAAGCAGGAGACTGCCCACCAG 2837138 28 100.0 33 NNNNNNNNNN ............................ CGGTTGATAAAACGCTGCGTAAGTTTTTCGAAG 2837199 28 100.0 33 NNNNNNNNNN ............................ TAAAACTTCATAGATTGTTGCCTCCATTGTTTC 2837260 28 100.0 33 NNNNNNNNNN ............................ TACGTCAACGGACAAACCAAAACCGAATGGAAG 2837321 28 100.0 33 NNNNNNNNNN ............................ TAAGTAACGCTGCTACTGCCCTGAGCTAGTACC 2837382 28 100.0 33 NNNNNNNNNN ............................ TACTGGCCGATGAGGTGGACCGCTACGGCTTCA 2837443 28 100.0 33 NNNNNNNNNN ............................ TCACCCAGCACATTACCACCCATGATCAGCGTT 2837504 28 100.0 33 NNNNNNNNNN ............................ CGAGTGGGTTTAGGTTGTAGGTTGCACATACGC 2837565 28 100.0 33 NNNNNNNNNN ............................ TTCGAAAAGCTATTAGGCGGCATAACCACAGTT 2837626 28 100.0 33 NNNNNNNNNN ............................ CAACAAACCAGCCACTTTGCATTTTGTAGCAGA 2837687 28 100.0 33 NNNNNNNNNN ............................ TGGAAGTTATTTATATTGGACCTGATTGCACGG 2837748 28 100.0 33 NNNNNNNNNN ............................ TACTTTGGGCCTTGTTTTATGTGCCAGTGCCCG 2837809 28 100.0 33 NNNNNNNNNN ............................ CCACTATTTCAATAATCGGCGTAGCTCCGACTG 2837870 28 100.0 33 NNNNNNNNNN ............................ CGTAATCTTCTTTGTCTGAGTAATCCAAAATAC 2837931 28 100.0 33 NNNNNNNNNN ............................ TCATGGCAGCGATATTTGTTTTACCCTTCATAC 2837992 28 100.0 33 NNNNNNNNNN ............................ CATCTGGAACGCACTCAAGCGGCAATCCGAAGT 2838053 28 100.0 33 NNNNNNNNNN ............................ CAGCAATGTGTTATCCAATGCGAAAGCGCCGTT 2838114 28 100.0 33 NNNNNNNNNN ............................ TATTTTGCGTATCACCGAAGCGCTGTAGGTTAT 2838175 28 100.0 33 NNNNNNNNNN ............................ TACGTCCAGCATTACCGCCGCGCCGTGTCGAGT 2838236 28 100.0 33 NNNNNNNNNN ............................ TCCTCCCTGCTCATATGCCGTTAAAACTTTCTC 2838297 28 100.0 33 NNNNNNNNNN ............................ TCTGATGCGGCAAGCTCTTTCGCTAGCTCGATT 2838358 28 100.0 33 NNNNNNNNNN ............................ TACAACATCCATGCAAGCGGCAAAGAATACAAA 2838419 28 100.0 34 NNNNNNNNNN .....................TGTG..T CCTCTTTAATCGAATTCCATAACGGTGACGTTAA 2838481 28 100.0 1 NNNNNNNNNN .................T..AT.ACAGA NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 40 28 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-12.00,-10.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [45,114] Score: 0.18/0.18 # # Final direction: F [1.05,0.55 Confidence: LOW] >NC_009470 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 25677 29 100.0 32 NNNNNNNNNN ............................. CGCCTCGGCCAGTATGTGATCGCGGCGATCGT 25738 29 100.0 32 NNNNNNNNNN ............................. CTGAACATCATAGACTTTCACCGTCACCGAAA 25799 29 100.0 32 NNNNNNNNNN ............................. AAAGACGCCGGCAATTCAGCCGCCGCTCATTG 25860 29 100.0 1 NNNNNNNNNN ............T...........C..T. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 4 29 32 CCGTTCCCCGCGCACGCGGGGATGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [4,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [55.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1578,26] Score: 0.18/0.18 # # Final direction: F [1.23,0 Confidence: HIGH] >NC_009483 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 995047 29 100.0 32 NNNNNNNNNN ............................. TTGTTTTAGCATGTGTAATCACCTTCTCGTCA 995108 29 100.0 32 NNNNNNNNNN ............................. GTGCAAGTGGTGAAGAACATCTGGAAATGGAA 995169 29 100.0 32 NNNNNNNNNN ............................. ACCTGTGCGGGATGCAGTGGCCTGTGCCTTGT 995230 29 100.0 32 NNNNNNNNNN ............................. ACGTTGGTCTTTGCAGTTCTTTCTGGCCAACA 995291 29 100.0 32 NNNNNNNNNN ............................. GCCGGCCGTCTTCTGGGTGACGAGAAAATACT 995352 29 100.0 32 NNNNNNNNNN ............................. GCATGGAGTCGTTGCGGACAGCCGCCGACAGG 995413 29 100.0 32 NNNNNNNNNN ............................. GAATGCTATTTCTTTTTTTCCTTTCCGAGAAA 995474 29 100.0 32 NNNNNNNNNN ............................. ATGATCTGTCTGATGCGGAAATCCCGCAGGAA 995535 29 100.0 32 NNNNNNNNNN ............................. ATTTAGTCTCTCCTGCAGCAAATGTCCCGGAG 995596 29 100.0 32 NNNNNNNNNN ............................. ACGCGCCCGCCCGACATGACTGAGAAAAACGT 995657 29 100.0 32 NNNNNNNNNN ............................. AACGACCGCAATTTCCAAGTAGGGGATGAACT 995718 29 100.0 32 NNNNNNNNNN ............................. GTGGTTCGCCGGTTTAACAAGCGCTCGGACTC 995779 29 100.0 32 NNNNNNNNNN ............................. CATGGAGCACAGCGAAGAAGCATTAATCGACA 995840 29 100.0 32 NNNNNNNNNN ............................T CAGAATATGGAGATAGCCATGATGAGACAGAC 995901 29 100.0 32 NNNNNNNNNN ............................. CCACACATTGTTTTCGACATAGCGGGCATGAG 995962 29 100.0 32 NNNNNNNNNN ............................. AACCCGGTCGTCATGATAGGCATGGAGGACAT 996023 29 100.0 32 NNNNNNNNNN ............................. GTTCCCCTGTGTCCCCAGGGTTTGCTTCATTG 996084 29 100.0 32 NNNNNNNNNN ............................. TTTGATTATATCTTGTTCTGCCATGCACTGAT 996145 29 100.0 32 NNNNNNNNNN ............................A GGAGACAAACCATGAACGCAAAAAATCAAATC 996206 29 100.0 32 NNNNNNNNNN ............................. TGCGGTGTGTGGTGCCCGGTGGTCTGTCAATA 996267 29 100.0 32 NNNNNNNNNN ............................. GGACCGCGGCGAGCCGATTACCCCGGATGAGC 996328 29 100.0 32 NNNNNNNNNN ............................. AGTCTGCGGCGGCGGATCGTGCTGTACGTGAA 996389 29 100.0 32 NNNNNNNNNN ............................. TCGGATCGCCGTACGCTCCGGTGCCGGTTAAT 996450 29 100.0 32 NNNNNNNNNN ............................. GCTGACGGGCGGGGTTTCGTCCCCGTCCAGCC 996511 29 100.0 32 NNNNNNNNNN ............................. GGCGGGGTAATTGATTGGCAAGATGAAGAGCT 996572 29 100.0 32 NNNNNNNNNN .......T..................... AGTTCTCCTCCAGCGATTTGCTGGCGGAGGCA 996633 29 100.0 32 NNNNNNNNNN ............................. TCTGCGGGGCTCTACCTTGGATATTTCCGTAT 996694 29 100.0 32 NNNNNNNNNN ............................. CCGGGCGGGTGCGCTTTGTCGTTATAATGTTT 996755 29 100.0 32 NNNNNNNNNN ............................. CGCGCCCGCTGGCCGTGGAACGCGGATCGTTG 996816 29 100.0 1 NNNNNNNNNN ..........................T.. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 30 29 32 CTGTTCCCCGCACGAGCGGGGATGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [70,25] Score: 0/0.18 # # Final direction: F [1.05,0.37 Confidence: MEDIUM] >NC_009484 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 1300540 20 100.0 34 NNNNNNNNNN C..........A..C..... ACCCGTCGCGCCGGTGGCTCCGGTTGCGCCCGTG 1300594 20 100.0 43 NNNNNNNNNN ........T........... ACCCGTCGCGCCCGTGGCACCCATCGCGCCGGTGGCGCCCGTG 1300657 20 100.0 25 NNNNNNNNNN .................... ACCCATCGCGCCCGTGGCACCCGTC 1300702 20 100.0 25 NNNNNNNNNN .................... ACCCATCGCGCCCGTGGCACCCGTC 1300747 20 100.0 34 NNNNNNNNNN .................... TCCGGTTGCGCCCGTGGCACCCGTTGCGCCGGTG 1300801 20 100.0 25 NNNNNNNNNN ..............C..... ACCCATCGCGCCGGTGGCGCCCGTG 1300846 20 100.0 34 NNNNNNNNNN .................... TCCGGTGGCTCCGGTTGCGCCCGTGGCTCCGGTG 1300900 20 100.0 52 NNNNNNNNNN .................... TCCGGTGGCTCCGGTTGCGCCCGTGGCTCCGGTGGCACCCATCGCGCCCGTG 1300972 20 100.0 25 NNNNNNNNNN .........A.......... TCCGGTTGCGCCCGTGGCGCCGGTG 1301017 20 100.0 34 NNNNNNNNNN ........T........... ACCCGTCGCACCCGTTGCGCCGGTGGCACCCGTC 1301071 20 100.0 25 NNNNNNNNNN ........T.....C..... ACCCGTCGCGCCCGTGGCACCCGTC 1301116 20 100.0 34 NNNNNNNNNN ..G.....T.....C..... TCCGGTCGCACCCATCGCGCCCGTTGCGCCGGTG 1301170 20 100.0 34 NNNNNNNNNN ........T........... ACCCGTCGCACCCGTCGCGCCCGTGGCACCCATC 1301224 20 100.0 25 NNNNNNNNNN ........T.....C..... ACCCGTCGCGCCCGTGGCGCCTGTG 1301269 20 100.0 34 NNNNNNNNNN .................... TCCGGTGGCTCCGGTTGCGCCCGTGGCTCCGGTG 1301323 20 100.0 52 NNNNNNNNNN ...........A..C..... ACCCATCGCGCCCGTTGCGCCGGTGGCACCCATCGCGCCGGTGGCGCCCGTG 1301395 20 100.0 25 NNNNNNNNNN ..............C..... GCCTGTGGCACCCATCGCGCCGGTG 1301440 20 100.0 43 NNNNNNNNNN ...........A..C..... ACCCGTCGCACCCGTGGCACCCATCGCGCCCGTTGCGCCGGTG 1301503 20 100.0 52 NNNNNNNNNN ........T.....C..... ACCCGTCGCACCCATCGCGCCCGTGGCACCCGTCACGCCGGTGGCTCCGGTT 1301575 20 100.0 43 NNNNNNNNNN ..G.....T........... ACCCGTCGCGCCCGTGGCACCCGTCGCGCCGGTGGCGCCCGTG 1301638 20 100.0 25 NNNNNNNNNN .................... ACCCGTCGCGCCCGTGGCGCCTGTG 1301683 20 100.0 25 NNNNNNNNNN ...........A..C..... ACCCATCGCGCCCGTGGCGCCCATC 1301728 20 100.0 43 NNNNNNNNNN ..G.....G.....C..... TCCAGTTGCGCCGGTGGCGCCCGTGGCACCCGTCGCGCCGGTG 1301791 20 100.0 61 NNNNNNNNNN ..G...........C..... GCCTGTGGCACCCGTCGCACCCGTGGCACCCATCGCGCCCGTTGCGCCGGTGGCACCCATC 1301872 20 100.0 70 NNNNNNNNNN ..G.....T.....C..... ACCCATCGCGCCCGTCGCGCCGGTGGCACCCGTTGCGCCGGTGGCACCCGTCACGCCGGTGGCTCCGGTT 1301962 20 100.0 43 NNNNNNNNNN ..G.....T........... ACCCGTCGCGCCCGTGGCACCCGTCGCGCCGGTGGCGCCCGTG 1302025 20 100.0 43 NNNNNNNNNN .................... ACCCGTCGCGCCCGTGGCGCCTGTGGCACCCGTCGCACCCGTG 1302088 20 100.0 34 NNNNNNNNNN ......A.......C..... GCCCGTGGCTCCAGTTGCGCCGGTGGCGCCCGTG 1302142 20 100.0 25 NNNNNNNNNN .................... GCCCGTCGCGCCCGTGGCGCCTGTG 1302187 20 100.0 43 NNNNNNNNNN ...........A..C..... ACCCATCGCGCCCGTTGCGCCGGTGGCACCCATCGCGCCGGTG 1302250 20 100.0 43 NNNNNNNNNN ........T.....C..... GCCTGTCGCACCCGTTGCGCCGGTGGCACCCATCGCGCCGGTG 1302313 20 100.0 43 NNNNNNNNNN ..............C..... ACCCGTCGCGCCGGTGGCACCCGTGGCTCCAGTTGCGCCGGCG 1302376 20 100.0 1 NNNNNNNNNN ........A.....C..C.G NNNNNNNNNN ========== ====== ====== ====== ========== ==================== 33 20 37 GCACCCGTCGCGCCGGTGGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: F [9-23] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1261,463] Score: 0.18/0.18 # # Final direction: R [0.59,0.64 Confidence: LOW] >NC_009486 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1107494 29 100.0 37 NNNNNNNNNN T.AT.AT...TCA......G........A TAGCAGTGGTTCACCTTTCCATCTTTCACATCACGCC 1107560 29 100.0 37 NNNNNNNNNN A............................ GGACAGGAACTTTGAGATTTTATTTAGCCACGAACAA 1107626 29 100.0 37 NNNNNNNNNN ............................. TCGTAGAGTTTGCCGTTGGAGGGCACGGCGTCTATGG 1107692 29 100.0 37 NNNNNNNNNN ............................. ATTTCAAACCTCAAAATTGCGTGCCGAACGTTCTCCT 1107758 29 100.0 35 NNNNNNNNNN ............................. TTGGGGGCGACATCAACGATGCATCAGCGGTGATT 1107822 29 100.0 37 NNNNNNNNNN ............................. TTGAAACGTCCAAAATAAAGGCTGTACTGTTTCCCAT 1107888 29 100.0 36 NNNNNNNNNN ............................. ATTATTCCCACCTCCGTGCCTCTATAGATTGTACCT 1107953 29 100.0 36 NNNNNNNNNN ............................. AAGGTCGTGTCTCTACTATGCTGTATGCTAGATCAG 1108018 29 100.0 38 NNNNNNNNNN ............................. CAGTACATAGCGGGCTTAAGTAACAGGGATTCTTATAC 1108085 29 100.0 35 NNNNNNNNNN ............................. CAGGGATTTGAAGATCTTCAGCACTACCTTCGGAA 1108149 29 100.0 38 NNNNNNNNNN ............................. CCTGGGCTCCAGAAATAAGTATTAGCTGTAACTATTTT 1108216 29 100.0 35 NNNNNNNNNN ............................. CAGTACCTGTACGTGGCAAATCGGGAAAATTCTAC 1108280 29 100.0 37 NNNNNNNNNN ............................. TGTCTTGAGAGGTGTACTTGAGAAGGAGGCGAAATGA 1108346 29 100.0 36 NNNNNNNNNN ............................. GAGGAAGTATCAAGGAAGAAATCTTCATAGATGCAA 1108411 29 100.0 36 NNNNNNNNNN ............................. CACAAAAATCATTATGAACAGTTTGTATGGCAAATT 1108476 29 100.0 37 NNNNNNNNNN ............................. ACGACACAAACACCGGAAAACTTGTTGTATTTTCAGA 1108542 29 100.0 37 NNNNNNNNNN ............................. GTGACCGTTTTTGTATGTTGTGTCGGGAAAAACCATC 1108608 29 100.0 37 NNNNNNNNNN ............................. CCCACATCGCTATCCCTCCTCATAACCATCGCACTTC 1108674 29 100.0 36 NNNNNNNNNN ............................. CGTTCGTCAGCACAATTCTCGGAAGGCCTGTGGCGA 1108739 29 100.0 37 NNNNNNNNNN ............................. TGAAAGGTCTTGAACAGCTTCTTCAGGCGGTGGCATC 1108805 29 100.0 37 NNNNNNNNNN ............................. CTGACCCTTTTTCCTCATCCCTGAGTGTCCATCTATA 1108871 29 100.0 37 NNNNNNNNNN ............................. ATATCTATACCACAGCATTTCTGCAACTTCAGGGACA 1108937 29 100.0 36 NNNNNNNNNN ............................. ACGAAATACAACATCACACAAACTTTAGGCACTTTT 1109002 29 100.0 37 NNNNNNNNNN ............................. AACTACTACTCTTTTGTCACCAATAAAAATACTAAAA 1109068 29 100.0 38 NNNNNNNNNN ............................. GTTATAGACTGGAAACAACTGAGGGGAGGTAGATGATA 1109135 29 100.0 37 NNNNNNNNNN ............................. GAGATGAAGCACTAAAAGGGCTATATTCCTATAATGC 1109201 29 100.0 36 NNNNNNNNNN ............................. CGTTCGTCAGCACAATTCTCGGAAGGCCTGTGGCGA 1109266 29 100.0 37 NNNNNNNNNN ............................. TGAAAGGTCTTGAACAGCTTCTTCAGGCGGTGGCATC 1109332 29 100.0 36 NNNNNNNNNN ............................. TGATTCGCGGGAACGGCGATCTTTTGCTCTTCGACC 1109397 29 100.0 35 NNNNNNNNNN ............................. TTGTCCTAACTCTTTCCCGCTCTCAAGTTCAACAT 1109461 29 100.0 35 NNNNNNNNNN ............................. GAAGAACGAGAAGGGCAAGAAAAAGAAGAAAGTAA 1109525 29 100.0 36 NNNNNNNNNN ............................. AACTTGAAAAGGACTTCATCGTTGAGGGAGAGCCTG 1109590 29 100.0 37 NNNNNNNNNN ............................. TTTTTGATCTCACTGAAGAAGATTTTATACTCAATAA 1109656 29 100.0 37 NNNNNNNNNN ............................. TTTGTTGTCCCTATCTCCACCGCAAAGGACGTGACGC 1109722 29 100.0 36 NNNNNNNNNN ............................. ACCTCACACTCGCATACAAAGTCGCAGTAGGATATC 1109787 29 100.0 36 NNNNNNNNNN ............................. GGTATTGGAAAGGGTTGGTTAATAGGTGTGGGACGG 1109852 29 100.0 35 NNNNNNNNNN ............................. GCGACGCTGTACAAATACCCCTATTTAATTGACGC 1109916 29 100.0 38 NNNNNNNNNN ............................. ACTACTCTTCTTTCGTGATATTCCTCTCGTATATTGTC 1109983 29 100.0 37 NNNNNNNNNN ............................. TACTTTGACTCTGCGTACATTAGTGCGGTGATTAGTT 1110049 29 100.0 38 NNNNNNNNNN ............................. GATAACAAAATTTCGAAACGTTATGACATACAAGGATA 1110116 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 41 29 36 GTTCATATTCCTCTTAGGAAGATAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.97%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-3.40,-3.40] Score: 0/0.37 # Array degeneracy analysis suggestion: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2106,80] Score: 0.18/0.18 # # Final direction: R [0.18,0.68 Confidence: MEDIUM] >NC_009486 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1171790 30 100.0 36 AACTCAACGG .............................. AAGCAAAGGAGAAAGCGCCCGTCAGGACCGGAGCAT 1171856 30 100.0 35 ACCGGAGCAT .............................. CTTCCTGCCTTGCGCGGGTTGAACCGGAACCTTAT 1171921 30 100.0 36 GGAACCTTAT .............................. CCACATTTCATATGCCTTTTTCAGATACCAAGCCCC 1171987 30 100.0 37 ACCAAGCCCC .............................. TAGTCTATAATGTAATTGGACTTAAACATAGGAGTGA 1172054 30 100.0 37 ATAGGAGTGA .............................. CTCTTTCTTCATCAACGAGGATCACCTCCCCATCTCC 1172121 30 100.0 36 CCCCATCTCC .............................. TAACATCCCTCGCACTCGTCTTTTGATTCAAAAATT 1172187 30 100.0 37 TTCAAAAATT .............................. CCTGGTAAGAGTTCTCTATACAGTTGTAATGCATCTT 1172254 30 100.0 36 AATGCATCTT .............................. GCTACAGCAACGAGGTCGCACGCTAGGGCTTTGACG 1172320 30 100.0 38 GGCTTTGACG .............................. TTTTTTCGGGGGCTTTCCCGCTACTCTGGGCTTTCATT 1172388 30 100.0 35 GGCTTTCATT .............................. AGACCACCCCCACCAAAATTGCAAGAGAAGCGCTT 1172453 30 100.0 36 AGAAGCGCTT .............................. CTGCGTGGGAAAAGATACCAATCACAACCCGTCTCA 1172519 30 100.0 36 ACCCGTCTCA .............................. AAATTTTGTCTTCGTTTTTGTCTTGTAAGGTGATAT 1172585 30 100.0 AAGGTGATAT .............................. CCGGCTCTAAC ========== ====== ====== ====== ========== ============================== 13 30 36 GTTTCAATAATTCCTTAGAGGTATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [63.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [646,125] Score: 0.18/0.18 # # Final direction: R [0.45,4.87 Confidence: HIGH] >NC_009486 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1107561 29 96.6 37 CATCACGCCA -............................ GGACAGGAACTTTGAGATTTTATTTAGCCACGAACAA 1107627 29 100.0 37 CCACGAACAA ............................. TCGTAGAGTTTGCCGTTGGAGGGCACGGCGTCTATGG 1107693 29 100.0 37 GCGTCTATGG ............................. ATTTCAAACCTCAAAATTGCGTGCCGAACGTTCTCCT 1107759 29 100.0 35 ACGTTCTCCT ............................. TTGGGGGCGACATCAACGATGCATCAGCGGTGATT 1107823 29 100.0 37 AGCGGTGATT ............................. TTGAAACGTCCAAAATAAAGGCTGTACTGTTTCCCAT 1107889 29 100.0 36 TGTTTCCCAT ............................. ATTATTCCCACCTCCGTGCCTCTATAGATTGTACCT 1107954 29 100.0 36 GATTGTACCT ............................. AAGGTCGTGTCTCTACTATGCTGTATGCTAGATCAG 1108019 29 100.0 38 GCTAGATCAG ............................. CAGTACATAGCGGGCTTAAGTAACAGGGATTCTTATAC 1108086 29 100.0 35 ATTCTTATAC ............................. CAGGGATTTGAAGATCTTCAGCACTACCTTCGGAA 1108150 29 100.0 38 ACCTTCGGAA ............................. CCTGGGCTCCAGAAATAAGTATTAGCTGTAACTATTTT 1108217 29 100.0 35 TAACTATTTT ............................. CAGTACCTGTACGTGGCAAATCGGGAAAATTCTAC 1108281 29 100.0 37 AAAATTCTAC ............................. TGTCTTGAGAGGTGTACTTGAGAAGGAGGCGAAATGA 1108347 29 100.0 36 GGCGAAATGA ............................. GAGGAAGTATCAAGGAAGAAATCTTCATAGATGCAA 1108412 29 100.0 36 ATAGATGCAA ............................. CACAAAAATCATTATGAACAGTTTGTATGGCAAATT 1108477 29 100.0 37 ATGGCAAATT ............................. ACGACACAAACACCGGAAAACTTGTTGTATTTTCAGA 1108543 29 100.0 37 TATTTTCAGA ............................. GTGACCGTTTTTGTATGTTGTGTCGGGAAAAACCATC 1108609 29 100.0 37 AAAAACCATC ............................. CCCACATCGCTATCCCTCCTCATAACCATCGCACTTC 1108675 29 100.0 36 ATCGCACTTC ............................. CGTTCGTCAGCACAATTCTCGGAAGGCCTGTGGCGA 1108740 29 100.0 37 CCTGTGGCGA ............................. TGAAAGGTCTTGAACAGCTTCTTCAGGCGGTGGCATC 1108806 29 100.0 37 CGGTGGCATC ............................. CTGACCCTTTTTCCTCATCCCTGAGTGTCCATCTATA 1108872 29 100.0 37 TCCATCTATA ............................. ATATCTATACCACAGCATTTCTGCAACTTCAGGGACA 1108938 29 100.0 36 TTCAGGGACA ............................. ACGAAATACAACATCACACAAACTTTAGGCACTTTT 1109003 29 100.0 37 AGGCACTTTT ............................. AACTACTACTCTTTTGTCACCAATAAAAATACTAAAA 1109069 29 100.0 38 AATACTAAAA ............................. GTTATAGACTGGAAACAACTGAGGGGAGGTAGATGATA 1109136 29 100.0 37 GTAGATGATA ............................. GAGATGAAGCACTAAAAGGGCTATATTCCTATAATGC 1109202 29 100.0 36 CCTATAATGC ............................. CGTTCGTCAGCACAATTCTCGGAAGGCCTGTGGCGA 1109267 29 100.0 37 CCTGTGGCGA ............................. TGAAAGGTCTTGAACAGCTTCTTCAGGCGGTGGCATC 1109333 29 100.0 36 CGGTGGCATC ............................. TGATTCGCGGGAACGGCGATCTTTTGCTCTTCGACC 1109398 29 100.0 35 CTCTTCGACC ............................. TTGTCCTAACTCTTTCCCGCTCTCAAGTTCAACAT 1109462 29 100.0 35 AGTTCAACAT ............................. GAAGAACGAGAAGGGCAAGAAAAAGAAGAAAGTAA 1109526 29 100.0 36 AAGAAAGTAA ............................. AACTTGAAAAGGACTTCATCGTTGAGGGAGAGCCTG 1109591 29 100.0 37 GGAGAGCCTG ............................. TTTTTGATCTCACTGAAGAAGATTTTATACTCAATAA 1109657 29 100.0 37 TACTCAATAA ............................. TTTGTTGTCCCTATCTCCACCGCAAAGGACGTGACGC 1109723 29 100.0 36 GACGTGACGC ............................. ACCTCACACTCGCATACAAAGTCGCAGTAGGATATC 1109788 29 100.0 36 GTAGGATATC ............................. GGTATTGGAAAGGGTTGGTTAATAGGTGTGGGACGG 1109853 29 100.0 35 TGTGGGACGG ............................. GCGACGCTGTACAAATACCCCTATTTAATTGACGC 1109917 29 100.0 38 TAATTGACGC ............................. ACTACTCTTCTTTCGTGATATTCCTCTCGTATATTGTC 1109984 29 100.0 37 GTATATTGTC ............................. TACTTTGACTCTGCGTACATTAGTGCGGTGATTAGTT 1110050 29 100.0 38 GTGATTAGTT ............................. GATAACAAAATTTCGAAACGTTATGACATACAAGGATA 1110117 29 100.0 TACAAGGATA ............................. CGCATTCATT ========== ====== ====== ====== ========== ============================= 40 29 36 GTTCATATTCCTCTTAGGAAGATAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.97%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-3.40,-3.40] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2173,79] Score: 0.18/0.18 # # Final direction: R [0.18,0.68 Confidence: MEDIUM] >NC_009486 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1372310 30 100.0 36 AACTCAACGG .............................. TTTACACCTCTCACGACATCATAACCGCTTTCGCAG 1372376 30 100.0 43 GCTTTCGCAG .............................. TATTTCTTTCCCGATCGTTCGAAAAGTGTCTAAGTGTTTCCAT 1372449 30 100.0 36 GTGTTTCCAT .............................. AAGTGTTTTTTATACACTTCTCCTGCAAACTTCTCG 1372515 30 100.0 37 AAACTTCTCG .............................. GAATCAACAACAATTTCAAGCATTTTGATATCCGAGA 1372582 30 100.0 36 ATATCCGAGA .............................. CTACTTCGCAGCCGTGTATGGTAGAAAGCCGCAGCG 1372648 30 100.0 AGCCGCAGCG .............................. ATTCCGACGC ========== ====== ====== ====== ========== ============================== 6 30 37 GTTTCAATAATTCCTTAGAGGTATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [571,180] Score: 0.18/0.18 # # Final direction: R [0.45,4.87 Confidence: HIGH] >NC_009486 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 536452 30 100.0 37 TCCGTTAGCC .............................. CTGGTGAGGTTGATGGGGCTTTTGACTTCTTCGGTGT 536519 30 100.0 39 TCTTCGGTGT .............................. GCGGGATTATCCGGCGGGCTTTTGGTGTGCTTTAAAAAT 536588 30 100.0 36 CTTTAAAAAT .............................. AACTTCATACTCACCGACTACTGCATCAAAAGAAGT 536654 30 100.0 36 CAAAAGAAGT .............................. CGCTCGGCGGCGTAGGCTGGGCTGTGGCAGTATTCT 536720 30 100.0 36 GCAGTATTCT .............................. TCGGTTTGTGCACTATCACTTCTCCGCTTGAGAGCG 536786 30 100.0 36 CTTGAGAGCG .............................. GCTCCTCGAAAAGTATCCTGTCCACGTGGAGATTTA 536852 30 100.0 38 TGGAGATTTA .............................. CCGTCTGCTTCAACAGCGATTATTGCGAACGTATCTTT 536920 30 100.0 34 ACGTATCTTT .............................. CTTTTATCATACCTCATTTTTCCGGATTGTCAAT 536984 30 100.0 37 GATTGTCAAT .............................. TGAACGCTGAGAACGATGTTGCAACGAGGTTCAACCT 537051 30 100.0 37 GGTTCAACCT .............................. ATTAATGGCCGTGTAAAAATGATTGCAGAGGCAACCG 537118 30 100.0 38 GAGGCAACCG .............................. AATAGAGAAATCATATCGTATGCTCCCGCATTGTGCCC 537186 30 100.0 CATTGTGCCC .............................. CCGTTGAGTT ========== ====== ====== ====== ========== ============================== 12 30 36 GTTTCCATACCTCTAAGGAACTATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [161,628] Score: 0.18/0.18 # # Final direction: F [4.5,0.82 Confidence: HIGH] >NC_009486 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 523936 30 100.0 36 AACTCAACGG .............................. GCTTCAGCAGATTAAACAATACGTGAATCCAAGTCT 524002 30 100.0 37 ATCCAAGTCT .............................. CGGTTGCCTCTGCAATCATTTTTACACGGCCATTAAT 524069 30 100.0 39 GGCCATTAAT .............................. CCGTAGTCAAAATCGTAGAAACAGACAAGGTACCAACCG 524138 30 100.0 37 GTACCAACCG .............................. GGAGTACCTTCCGCTTCTTCCAAGCAACGTGGTAGAG 524205 30 93.3 CGTGGTAGAG .........C..................C. ACCCGATT ========== ====== ====== ====== ========== ============================== 5 30 37 GTTTCAATAGTTCCTTAGAGGTATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.80,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [658,60] Score: 0.18/0.18 # # Final direction: R [1.23,4.5 Confidence: MEDIUM] >NC_009486 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 568305 30 96.7 36 ACAAAACAGC ....................T......... GTTGAGACCATTCGTCAGGATTTTCGGGTGAATAGT 568371 30 100.0 38 GGTGAATAGT .............................. GATGATGATGTAATTGTTCTTTCAGGTAGTAGATACGA 568439 30 100.0 36 GTAGATACGA .............................. TATGTGTTTATCTCCTCATCTTGCATGTCTCTGTCA 568505 30 100.0 37 GTCTCTGTCA .............................. ATATCACACATTTCACTGTGTGTCAATAACGAAAAAG 568572 30 100.0 36 AACGAAAAAG .............................. ATTGCGAGAGATCAGAAATATTCTCCGCTTTGTAAA 568638 30 100.0 36 GCTTTGTAAA .............................. TAAAGGATATGAGATACTCACTACTGAGAAATCATT 568704 30 100.0 AGAAATCATT .............................. CCGTTGAGTTC ========== ====== ====== ====== ========== ============================== 7 30 36 GTTTCCATACCTCTAAGGAACTATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [136,625] Score: 0.18/0.18 # # Final direction: F [4.5,0.96 Confidence: MEDIUM] >NC_009486 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 940035 30 83.3 35 GGGTTATTTT -...T.G...A.........G......... AAACTATTAGATTTTCTTAGCGAAAGAATGTCTTA 940100 30 96.7 35 GAATGTCTTA ....................G......... AACAACATTTATGAATACAAGATCGTCGTCCAACT 940165 30 100.0 37 TCGTCCAACT .............................. TGAGAGAATTTGTTCACGTTTTGGAGCGTATGCTTTA 940232 30 96.7 36 GTATGCTTTA ....................G......... AGGTGTTTGACAACACGAAACAATGGGAAGACATCA 940298 30 100.0 37 GAAGACATCA .............................. AGGAAGTCGTGTTCACAAATCCGGACGTAAAAGTGCT 940365 30 96.7 37 TAAAAGTGCT ....................C......... AAGAGAAATTAGAAGAAGAAGCGAAGGCGTTTTTAGA 940432 30 96.7 36 CGTTTTTAGA ....................C......... TTTGCGAACGTACGAGATTTTTTTCACATATCATAA 940498 30 96.7 37 CATATCATAA ....................C......... AGGCCATCAAGTTTGACGGCCCTGTTGGAGTCATATT 940565 30 96.7 36 GAGTCATATT ....................C......... AAATTAGAGGCAAAGAGGTTGTAATGGATGAATGGT 940631 30 96.7 37 GATGAATGGT ....................C......... TGAGTTCCCCTATCCATTCAGTATCATCCTCCCCTTG 940698 30 100.0 37 CCTCCCCTTG .............................. AGGAGGTGATAAAACGAAATGGGAAATTTTTCAGCCC 940765 30 100.0 37 TTTTCAGCCC .............................. AAAAGCTGGTGGTACTCGAAGCCCTTCGTAGGCTTTT 940832 30 100.0 36 GTAGGCTTTT .............................. TGAGAAGAGAATACGCAATATTAGTATGGCTTGAAG 940898 30 100.0 39 TGGCTTGAAG .............................. CATACTCCAACGCAAAATAATATGTTCTATTTCTCAAAA 940967 30 100.0 36 TTTCTCAAAA .............................. AAACGGACGAACGGTGTCGGCCAAAGTAAGGAGGAT 941033 30 100.0 36 TAAGGAGGAT .............................. ACGAAAACGTGTTGAGGTTTCGAGTATCGAGGCGCA 941099 30 100.0 36 TCGAGGCGCA .............................. CCGCCACGCATCCGGCTGCCGTAGGCGATTGGTTGG 941165 30 100.0 38 GATTGGTTGG .............................. GTGGTCTACTACAGCACATGGATGCAGGAGGATGAAAT 941233 30 100.0 AGGATGAAAT .............................. CCGTTGAGTT ========== ====== ====== ====== ========== ============================== 19 30 36 GTTTCCATACCTCTAAGGAATTATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.00,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [52,636] Score: 0.18/0.18 # # Final direction: F [4.87,0.59 Confidence: HIGH] >NC_009495 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2302049 30 100.0 36 NNNNNNNNNN G............CT............... TTATATGGTATTTAAGGTTATAGATAAATTAACTGG 2302115 30 100.0 35 NNNNNNNNNN ...........C.................. CTTAAATATATAGGTATAGATCAAGACGCTAAAGA 2302180 30 100.0 36 NNNNNNNNNN .............................. TCTTAACCTTTAATTACATTATATATTATAAGTTCA 2302246 30 100.0 36 NNNNNNNNNN ..............T......C........ ATTTCATCAAATCCGCATCAATAAATGAGATAAACT 2302312 30 100.0 37 NNNNNNNNNN .............................. TAAATTATACCTTAATGCTTATCAATATAGTCTTGTA 2302379 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 6 30 36 ATTTAAATACATCTCATGTTAATGTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [134,292] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_009495 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2309047 30 90.0 36 CATTTCTTGC --....G....................... TGAACTTATGAAAGAACTAGAGTGTGGAGAACCCTT 2309113 30 100.0 36 GAGAACCCTT .............................. ATTAGGTTTGCCACCACATTCCGTTACTGCAGTAGT 2309179 30 100.0 38 CTGCAGTAGT .............................. TTAAGTATGATAATATAAAACCTTGGTAAATATATTAA 2309247 30 96.7 AATATATTAA ............T................. GAAAAAGGTA ========== ====== ====== ====== ========== ============================== 4 30 36 ATTTAAATACATCTCATGTTAATGTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [222,1450] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_009495 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 2309052 23 100.0 43 NNNNNNNNNN ....................... TGAACTTATGAAAGAACTAGAGTGTGGAGAACCCTTATTTAAA 2309118 23 100.0 43 NNNNNNNNNN ....................... ATTAGGTTTGCCACCACATTCCGTTACTGCAGTAGTATTTAAA 2309184 23 100.0 45 NNNNNNNNNN ....................... TTAAGTATGATAATATAAAACCTTGGTAAATATATTAAATTTAAA 2309252 23 100.0 42 NNNNNNNNNN .....T................. GAAAAAGGTAAATTAGCAAGTGCAAAAGATTTAGAATTTAAA 2309317 23 100.0 1 NNNNNNNNNN ....................... NNNNNNNNNN ========== ====== ====== ====== ========== ======================= 5 23 43 TACATCTCATGTTAATGTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:69.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [227,1387] Score: 0.18/0.18 # # Final direction: F [0.41,0.18 Confidence: MEDIUM] >NC_009495 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2324978 29 100.0 43 NNNNNNNNNN .G.TTT.TTCAA.ACAT........A.TG TTCAATAATAGAGTATTCAGATGAATATAAATTCTTGGAAGAA 2325050 29 100.0 38 NNNNNNNNNN ............................. TAGAGGTGATTTTATATGAAAAAGGAAAACATAACAAG 2325117 29 100.0 37 NNNNNNNNNN ............................. CGACCCTATAACAGTTTCAGAAGTAGAACAAAATATG 2325183 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 4 29 39 TTTAAATACATCTCATGTTAATGTTCAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [329,213] Score: 0/0.18 # # Final direction: R [0,0.78 Confidence: HIGH] >NC_009495 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 2325050 31 93.5 36 CTTGGAAGAA -.............................T AGAGGTGATTTTATATGAAAAAGGAAAACATAACAA 2325117 31 100.0 35 AACATAACAA ............................... GACCCTATAACAGTTTCAGAAGTAGAACAAAATAT 2325183 31 100.0 AACAAAATAT ............................... ACAGTAAAATAGCCATTCCTTA ========== ====== ====== ====== ========== =============================== 3 31 35 GTTTAAATACATCTCATGTTAATGTTCAATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:74.19%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [401,211] Score: 0/0.18 # # Final direction: R [0,0.78 Confidence: HIGH] >NC_009506 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 1006 19 100.0 35 NNNNNNNNNN ................... GATATAATAGTACAAATTTCCCACTTTTTTAAAAG 1060 19 100.0 36 NNNNNNNNNN ................... ACTTTTTTAAAAAAATAGTAGTACAAATTTCCCGAT 1115 19 100.0 1 NNNNNNNNNN ................... NNNNNNNNNN ========== ====== ====== ====== ========== =================== 3 19 35 ATAATAGTACAAATTTCCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:73.68%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [73.3-88.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1007,183] Score: 0.18/0.18 # # Final direction: R [0.18,0.27 Confidence: LOW] >NC_009515 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 152502 31 96.8 36 AGATATTAAG ....A.......................... AGTTGACCTAAGTTTATATAATTGTGCAAATCCAGC 152569 31 100.0 36 CAAATCCAGC ............................... AGATGATGTTTTATTGGAGAATGGATATGCAGTACA 152636 31 100.0 37 ATGCAGTACA ............................... CAGGTTATCATTTTCCATGATTACTTTATCATGTGTA 152704 31 100.0 36 ATCATGTGTA ............................... ATTATATGATGCTGTAGACTTAAGATGACTTTCTTG 152771 31 100.0 35 GACTTTCTTG ............................... ACTCACAAAAGAAACAGTGATCCTTATATTGCTCA 152837 31 100.0 34 ATATTGCTCA ............................... TTGAATTAGAAATCACAGTTAAAGAAATACCTAC 152902 31 100.0 33 AAATACCTAC ............................... TCCTATTTTGGACAATTTTGTTTTAATACCATC 152966 31 100.0 35 TAATACCATC ............................... ATCACCATCATACCATTTTCATTTATATGAATATT 153032 31 100.0 34 TATGAATATT ............................... CTACAAAAAACCATTCAAGCAATAAACCTGACTA 153097 31 100.0 37 AACCTGACTA ............................... TATCTAAATCATTCCTTTTATAAATCACTTCACTGAT 153165 31 100.0 36 CTTCACTGAT ............................... CTGTGTCGTTTAATAATAAATCATTTACGTAACTAA 153232 31 100.0 35 ACGTAACTAA ............................... CTAATACATCTGACATCATAAAAACACCTTTCATA 153298 31 100.0 36 ACCTTTCATA ............................... GACAGTTAAAACATTTGCCATTACAAATTATATATT 153365 31 100.0 32 ATTATATATT ............................... CCATACATTATCATACCAGTAAACCAATTTGG 153428 31 100.0 36 ACCAATTTGG ............................... TTCCACACTATCAAATTTGTTGATTTTTTCCATTCT 153495 31 100.0 37 TTTCCATTCT ............................... AAAAGTATACAAATAATCTGAAAACCATGGGTTCTAT 153563 31 100.0 35 TGGGTTCTAT ............................... ATCTTCCTTTTTGATAACAAGATTTGTTTCCTCGT 153629 31 100.0 36 GTTTCCTCGT ............................... ACTGGTTTAAATGGTGCTGGAATATCTAATAATCCA 153696 31 100.0 36 TAATAATCCA ............................... AATATATTTATATAGTAGACGGTATAAAGTAATATA 153763 31 100.0 36 AAGTAATATA ............................... TTTGATGTAGTTCTTCTTCAGTTATGTTGAATGTGT 153830 31 100.0 36 TTGAATGTGT ............................... ACATTCACCAACCTCAATTTCCATTTCAATAGTTTT 153897 31 100.0 36 CAATAGTTTT ............................... TGCTCCTGCAATCAAAATTAAAATCTTGTAAACTTC 153964 31 100.0 37 TGTAAACTTC ............................... CATCACGTCTTAACATTCTAATGTCATCTTCACTCCA 154032 31 100.0 36 CTTCACTCCA ............................... TTACTAATATGGCCAATGGTGTTAAAAGTTTACAAG 154099 31 100.0 36 AGTTTACAAG ............................... TTGTACATGCATTGTCCTGCATGTACTTTTAATGTT 154166 31 100.0 37 TTTTAATGTT ............................... TTTAGTTTATGATACTATGACCAGTGAATCCGACAGA 154234 31 100.0 37 ATCCGACAGA ............................... TAGTTGCAAAAGCTGTGGACACTGCAAGGTTAATTCT 154302 31 100.0 35 GGTTAATTCT ............................... ACCTCCTTTGTAACCTACAGGGTCACGACTGCCAG 154368 31 100.0 36 CGACTGCCAG ............................... TACTGAAAGGCATATCAGAATTAGTATCCAGTACAT 154435 31 100.0 36 TCCAGTACAT ............................... CAATACAGTTGCCTTCTACAATCCCGTTTTTAGTTG 154502 31 100.0 35 TTTTTAGTTG ............................... TAGGAAAAGCAATGGGAGCATTGTCTGATGTTAAT 154568 31 100.0 35 TGATGTTAAT ............................... TGTATATGTGAATAATGCTTGTCCATTATTATTCG 154634 31 100.0 38 TTATTATTCG ............................... ATTCTAATTGCATTGCGTTAGGATAATCGCTAACCTGT 154703 31 100.0 36 GCTAACCTGT ............................... TATTAATAAATCTTGTACTATTACTCATTGTCATAA 154770 31 100.0 33 ATTGTCATAA ............................... TCTAAAATCAGTGTATCCTGGTTCTTCATAGTA 154834 31 100.0 35 CTTCATAGTA ............................... CAAAGGTATCTGTGATGGATTTACTAATCATTTCC 154900 31 100.0 36 AATCATTTCC ............................... AGTTGCAGTAGTATAAGTAGAAGTTCCTTTATACGA 154967 31 100.0 34 CTTTATACGA ............................... TTGGTTACAAACAAGGTAAAGTTTTTCTACCTTT 155032 31 100.0 36 TTCTACCTTT ............................... TTTAGTAGTAGAAATAAGAAAAACTGAAAAAGTAAA 155099 31 100.0 36 AAAAAGTAAA ............................... ATTTAGATATTATGATGTTAATGCGGAAGTATGGTA 155166 31 100.0 32 AAGTATGGTA ............................... ATTCCTGCATATAGTACAATTACTGGAGTTAA 155229 31 100.0 34 CTGGAGTTAA ............................... ATCGCAGTGCTTGTAGCAATTATTGGTTTCGTAT 155294 31 100.0 34 GGTTTCGTAT ............................... AAGTAGTGTTGAATTTACATGGTACAAGTAATAC 155359 31 100.0 CAAGTAATAC ............................... AGGCCACATT ========== ====== ====== ====== ========== =============================== 44 31 35 ATTTCAATCCTATTATAGTCTTATTTTTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:80.65%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [123,344] Score: 0.18/0.18 # # Final direction: R [0.27,5.09 Confidence: HIGH] >NC_009523 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2316716 37 100.0 37 GGAAGTCGGG ..................................... ACGACATATTACGGGAGACGTGCATTCCCGCGGAATA 2316790 37 100.0 36 CCGCGGAATA ..................................... AGACGTTGACGCCATCAAACCATCGGATTTCAACGT 2316863 37 100.0 36 ATTTCAACGT ..................................... TCGGAAAAATCCCGACGTTGTGCAGCACAAACTGCA 2316936 37 100.0 39 ACAAACTGCA ..................................... CCGACCGGAGCCAGTCCGGTTCGGGGAGATGTGTGGCAA 2317012 37 100.0 36 TGTGTGGCAA ..................................... TTCGCGCGGGAAACGCGGAAGTCGTTCTCCAGTTCG 2317085 37 100.0 37 CTCCAGTTCG ..................................... CACGTTGAAGCAGTAGGCGTCGCCGGACGGCGTTGCG 2317159 37 100.0 36 CGGCGTTGCG ..................................... AGCGCGGCGTGGATCAACAGGCGGTTCCGGTCAACG 2317232 37 100.0 35 CCGGTCAACG ..................................... CAGACGACACGGCCACCACACCGCGCTTGGACAAA 2317304 37 100.0 36 CTTGGACAAA ..................................... ACAATGTGTTACCCTCACCTTTGTGGGGTACAACAT 2317377 37 100.0 38 GGTACAACAT ..................................... ATCACACGCAGCAGATCGAGCCACTGGCCGCCGCCACG 2317452 37 100.0 35 CGCCGCCACG ..................................... AAAGTTCGTATCTTGGCAGTTTGCGTCGCATTGTA 2317524 37 100.0 38 TCGCATTGTA ..................................... ACCGGCAAGCGGCTGGAGTGGCGGATGAACTTGTCAAC 2317599 37 100.0 36 ACTTGTCAAC ..................................... ATACTCGAAGATGCGTTCGTCTTCGAGTTCGAGGTA 2317672 37 100.0 36 GTTCGAGGTA ..................................... CTCTTACCCGGGTGGTCAAGCCGCGCCGGTTTCCGC 2317745 37 100.0 36 CGGTTTCCGC ..................................... TCGCTGCGCCGCCTCATCGAGGTCGGCGTACTCGAA 2317818 37 100.0 35 CGTACTCGAA ..................................... GATCCAGGCGGGCGTCGAGGCGCAACTGCGCATCA 2317890 37 100.0 35 CTGCGCATCA ..................................... CGCAGAATTGTTCTACCGCCGGTTTCTGCCGGACG 2317962 37 100.0 36 CTGCCGGACG ..................................... TCTGTGCGATCAGGCGCTCGTAGGGCAGACCGAACG 2318035 37 100.0 36 AGACCGAACG ..................................... TTCGACCGGCTGATGCTGAAACGTCAGCGTTGTCGG 2318108 37 100.0 36 GCGTTGTCGG ..................................... GCGCGTGTTGTCGGTGGGGCATCGCGTCTCGCTGGT 2318181 37 100.0 35 TCTCGCTGGT ..................................... GCGCGTTGGTGGACGGCAGCCAGGACGCGCCGGCG 2318253 37 100.0 35 CGCGCCGGCG ..................................... CTGTGCGCGGCGGGATGAGACCCGCTTGTTCTAGT 2318325 37 100.0 35 TTGTTCTAGT ..................................... GAATGCCCAACGCCCGCGCTTTGCTGACGAGTGCG 2318397 37 100.0 37 GACGAGTGCG ..................................... ATGGACGGATCGGCGCGGTACTCGTGGACGAGCTGCA 2318471 37 100.0 37 ACGAGCTGCA ..................................... GTATTTCGGCTTTACTGGTCTCTTACCGGCGGCGTCC 2318545 37 100.0 36 GGCGGCGTCC ..................................... GTCGTGCGCACGTTTGTGTGTCAGGGAGACTCGTAT 2318618 37 100.0 35 AGACTCGTAT ..................................... TCTCGATAAGTTTGTGGTTGCTCACCACATTCATT 2318690 37 100.0 37 CACATTCATT ..................................... CTCAGTACGTTCAATCGCCGCATTGCGATAGAGATAG 2318764 37 100.0 35 ATAGAGATAG ..................................... GTGTGTAGTAGCGCTTGCGCGCGGTTATCTCAATG 2318836 37 100.0 35 TATCTCAATG ..................................... CGCTTCCGCCTTCTTGATTACCGCGCCCGCAATCG 2318908 37 100.0 37 CCCGCAATCG ..................................... TCGCGGCAGAGGCAGCATCTCGCCGAAGGCGGCGAAG 2318982 37 100.0 36 GGCGGCGAAG ..................................... GCAAACTCGCGCAGCGCCCAGGCGAGGATGACGACG 2319055 37 100.0 36 GATGACGACG ..................................... AGGAGCAGGCGGCGTCTCCCTCCTCTTCGAGGCGGA 2319128 37 100.0 37 TCGAGGCGGA ..................................... ATCGGATATGGGAAGGCGTTAGGAACTGGGACGGTAA 2319202 37 100.0 37 GGGACGGTAA ..................................... GTCGGTGCGCTCCGATGCGTACCCGACGACGATTATC 2319276 37 100.0 36 GACGATTATC ..................................... CGTAGCGGAGAATGCGATACTGAATATCGCTGTCTG 2319349 37 100.0 37 TCGCTGTCTG ..................................... TCCTCATACTGACTCAACCACTCGTCAAGTTCCAGCA 2319423 37 100.0 35 AGTTCCAGCA ..................................... GCACGCGGACGAAGGCGTGCGCAGCACATCGAATA 2319495 37 100.0 36 ACATCGAATA ..................................... TCACGCCGTCGGCGACGTGGATGCCGGGGAATGGAG 2319568 37 100.0 37 GGGAATGGAG ..................................... TACGTCGGGATTGTCAAGCGACGCGCCGCGTCAACGA 2319642 37 100.0 38 GCGTCAACGA ..................................... GTCGAAGGTGACGACCTCGTAGTTGGTGTCACCGGTGA 2319717 37 100.0 37 TCACCGGTGA ..................................... GTCACTTCCGCGCCGATTTTCTCATCAAACCACGTGC 2319791 37 100.0 36 AACCACGTGC ..................................... TCCGTCGTACAGCCGGTAGAATACCCGTTCGTCCGT 2319864 37 100.0 37 GTTCGTCCGT ..................................... TTCTTATTATACCGGAAACGCCCCGCTTTTTCGTACA 2319938 37 100.0 36 TTTTCGTACA ..................................... CGAGTACGACATCTCAGAAAGGACGGTACGAATTGA 2320011 37 100.0 37 TACGAATTGA ..................................... TTCAGCCTCGTCCGCCAGTTCGTTCCAGCGGGTTGCG 2320085 37 100.0 36 GCGGGTTGCG ..................................... GCTGCGTGTGGGCGCTGGCGAGGTAGAAAGGATTTG 2320158 37 100.0 35 AAAGGATTTG ..................................... AGGGGAGGAAGGTAGTCTATGAACACCATCTCTTG 2320230 37 100.0 38 CCATCTCTTG ..................................... GGCGACGACAGTGATTATACGGTTATCGAGATTGTCGC 2320305 37 100.0 35 AGATTGTCGC ..................................... GCCAGAAACCCGCAGCGACTCGCTTGCGCGCCAAA 2320377 37 100.0 36 GCGCGCCAAA ..................................... GATCTATAGCCGCGATAGCCGTACAGCGCATACGGT 2320450 37 100.0 CGCATACGGT ..................................... TGCAGCGACGTCGCATCACCTGAACCACCTGCAAC ========== ====== ====== ====== ========== ===================================== 52 37 36 ATTTCGGCAATTTCGACTCGTTGAAGAGTACTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:59.46%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [316,77] Score: 0.18/0.18 # # Final direction: F [0.55,0 Confidence: HIGH] >NC_009523 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2321726 37 91.9 35 GCTTCTTCGC .....G.........A............T........ GGTCGAAGTCAAAAGGCGGGCAAGCGACGGATCGC 2321798 37 91.9 37 GACGGATCGC .....G.........A............T........ TCCCGACTAACTCATCAAGCACGCGCCGGGGCATCAT 2321872 37 91.9 36 GGGGCATCAT .....G.........A............T........ CGCAGCATCACGCGCGCCTTCAACACCGCGTAGGCG 2321945 37 91.9 35 CGCGTAGGCG .....G.........A............T........ GTTGGCGACGTACAGCAGCGTTTCGCCCAGCCGCG 2322017 37 91.9 35 CCCAGCCGCG .....G.........A............T........ TGACAAGGATGGTTCATCGCCTGGCGCTGGATCGC 2322089 37 91.9 36 GCTGGATCGC .....G.........A............T........ GCGACGATCGGCGTCAACCGCGCCTCCGGCAGCACG 2322162 37 91.9 36 CGGCAGCACG .....G.........A............T........ TCAACACCGAAGCGCGTCAAGTGCCCGACGCGCCCG 2322235 37 91.9 35 GACGCGCCCG .....G.........A............T........ TCAGCATCAACTCCGCGACCGCTTGCGCATCGTTG 2322307 37 91.9 37 CGCATCGTTG .....G.........A............T........ GGCGGCGACCAACTGGTCGAACAACATCGGCGCGCCG 2322381 37 91.9 37 CGGCGCGCCG .....G.........A............T........ GCGAAGGCGTCGATGCGCGTGTCGATCACGCCGAACC 2322455 37 91.9 35 ACGCCGAACC .....G.........A............T........ AGTTGGAACCACCACTCCGCCGCCCGTCGGTCGCG 2322527 37 91.9 35 GTCGGTCGCG .....G.........A............T........ TCACGAGGTCGAAGAAGATGAAGAAGTACACCATC 2322599 37 91.9 36 GTACACCATC .....G.........A............T........ GCGATTGCAGCCGCAGCGCTTTGTACAGCAGCGCTT 2322672 37 91.9 39 AGCAGCGCTT .....G.........A............T........ CTCTTCCAGTTCCGCTTTGCGCTCTGCGTCGCGCTTCTC 2322748 37 91.9 35 CGCGCTTCTC .....G.........A............T........ TCGCCAAAACGTCGTTGGCGATCGGTTGAATAAAT 2322820 37 91.9 36 TTGAATAAAT .....G.........A............T........ GTCGGTCTGGCGAAGAAACTGCACTGCGAACTGAGC 2322893 37 91.9 35 CGAACTGAGC .....G.........A............T........ CGATGCGCTGTTCCATTGCGGCGTAGTCGGCGTTC 2322965 37 91.9 36 GTCGGCGTTC .....G.........A............T........ GCGATACGCGCTCGAAGATCGGAATGAAAACGTCCA 2323038 37 91.9 39 AAAACGTCCA .....G.........A............T........ CGCGTGGCGGTCGAGCGGCGCGTCCGGCGGCAGATGCGC 2323114 37 91.9 37 GCAGATGCGC .....G.........A............T........ TCTGTCCAGCGCGCGTAGACCGCAAACGGGTGCGGCG 2323188 37 97.3 35 GGGTGCGGCG .....G............................... ACCAGTAGTGATAGACGACCATCACACGCCTACAG 2323260 37 100.0 36 ACGCCTACAG ..................................... GCCCGAAGATGGCTTGCAACGCCTTGAGTGCTTCGC 2323333 37 100.0 38 AGTGCTTCGC ..................................... AGCCCTTCGGTTTCCGTTGCCGACAGAGCATGATCTGT 2323408 37 100.0 35 CATGATCTGT ..................................... CTGAAGCCGTACAAGGCAAACGGTTGCGGGTCAGG 2323480 37 100.0 37 GCGGGTCAGG ..................................... CTGAAGAGATCACGTATGTCCAGACGCACCCGCCGCG 2323554 37 100.0 36 ACCCGCCGCG ..................................... CTCGATGATGCTGTTGTGGACGGCAGCGGAGATCTG 2323627 37 100.0 37 CGGAGATCTG ..................................... GGTCCGCTAATCCTCGAGATCATCACTGGCTGGTACT 2323701 37 100.0 35 GGCTGGTACT ..................................... CCACAGACTCCCGGACTGCACCTCCAACCAATACG 2323773 37 100.0 36 AACCAATACG ..................................... CTGAGTTGGCGCTGCCGGTGCTGGAGCAAGATCAAG 2323846 37 100.0 38 CAAGATCAAG ..................................... GTCCGTCGCCGCCAGCTCCCGCGCCACGCTGCGAATGA 2323921 37 100.0 36 CTGCGAATGA ..................................... GGATCACCAGTTCGATCGCCACATCCCTGAGTTCAG 2323994 37 100.0 38 CTGAGTTCAG ..................................... AAAGTAAGTTCTGCCCCTGTTAGAGCGCCCCACCAGAC 2324069 37 97.3 35 CCCACCAGAC ...............A..................... GGCAGGGCTGTACCGTCGCCCGGCACGCCGTACCG 2324141 37 100.0 35 CGCCGTACCG ..................................... CTGGCGAGGGGAGTACGAACTCAAACGACACATCG 2324213 37 100.0 37 CGACACATCG ..................................... CCTGAAACACTGATAGCGCCCCCAGTCGGGGCGCTAT 2324287 37 100.0 38 GGGGCGCTAT ..................................... TAGTTTTGAGAGAGTTGGGCTTTGCGCTGGCGTAGGCG 2324362 37 100.0 37 GGCGTAGGCG ..................................... TCCTTCCGCGACACAAACTCACGGTAGGAGGCGACCA 2324436 37 100.0 36 GAGGCGACCA ..................................... CTGGGCGACAGTTGCGCGGGAAGTGGGCTTGACGGA 2324509 37 100.0 37 GCTTGACGGA ..................................... GGCTGCGGGCAGACCGGTACGGACAAAACCAGCACGA 2324583 37 100.0 36 ACCAGCACGA ..................................... CTCGACCGGAACGCGCTGGCAGTAGAATTCGGGCAG 2324656 37 100.0 36 ATTCGGGCAG ..................................... CTGGGCGTTGCGCCCGCTCAACTCAACTCCGCCGAT 2324729 37 100.0 37 CTCCGCCGAT ..................................... CTGTTGGTCGATACGCTGGCGCTTGCGCTGGAGCAGC 2324803 37 100.0 35 CTGGAGCAGC ..................................... AGAGAGACGTAGGAGGAGATCACGTGAACCTTCCA 2324875 37 100.0 35 GAACCTTCCA ..................................... TGGGCATCGTTGATTCCTCTCGTGTAGCACTTGAG 2324947 37 100.0 36 AGCACTTGAG ..................................... TCGCTGACTACGAGTTTTCAACGTCTGATGACGGAG 2325020 37 100.0 38 GATGACGGAG ..................................... TCTGCGCGTTGTTGCACCAGCGCGCCCCGCGTCGGATC 2325095 37 100.0 GCGTCGGATC ..................................... TTTGTGGGG ========== ====== ====== ====== ========== ===================================== 47 37 36 ATTTCAGCAATTTCGGCTCGTTGAAGAGCACTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.40,-4.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-1] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [50.0-51.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [638,984] Score: 0/0.18 # # Final direction: F [0.37,0 Confidence: MEDIUM] >NC_009523 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2427392 37 100.0 37 NNNNNNNNNN ......A.........A.AGC.AA...TGAG.CG..A TTTGCCTGTCGGCGAGCGGAAACCAATACGGTGACAA 2427466 37 100.0 44 NNNNNNNNNN ......A.........A.AGC.AA...TGAG.CG..A TCCCTGAAATATCGTCTATTGTCTATCAATTAGGCTATTCAGGC 2427547 37 100.0 38 NNNNNNNNNN ..................................... GTCGCCCGCTGGAGCATCGAGGTTGATGCGCGGAACAT 2427622 37 100.0 38 NNNNNNNNNN ..................................... AGCGGGATCGGCGTGCTCATCAATCTCGCCCGCGAGCG 2427697 37 100.0 36 NNNNNNNNNN ..................................... AAGTATAGTACTGGCGGTTGGTTGGTGAAAGACGGA 2427770 37 100.0 35 NNNNNNNNNN ..................................... CCAGACGTAATCGAGCGCGCTTAGTCCGGCGTGAC 2427842 37 100.0 36 NNNNNNNNNN ..................................... GCGTCGGTAACGGCGACTGGATCGCCAGCGCGTCGG 2427915 37 100.0 38 NNNNNNNNNN ..................................... CTACGGCGCGCCAGGATGTATCACAAGTCGATACATCG 2427990 37 100.0 38 NNNNNNNNNN ..................................... AAATACGAGAAGTTCGCGGGTCGAGACCGGGGCGCACC 2428065 37 100.0 36 NNNNNNNNNN ..................................... AGGAACACATCTTCCGGAGCAGTATCAACACCAGTT 2428138 37 100.0 38 NNNNNNNNNN ..................................... CGACACGCGGAACGAACCGCGCCGGTGTACGAGTTTCT 2428213 37 100.0 36 NNNNNNNNNN ..................................... CTCTTTCGGAGACCGGCGGCGATTGCGAAAGGGCGA 2428286 37 100.0 36 NNNNNNNNNN ..................................... GGGTCACCTCACGCGCTTCGGTGTGGATGGGTTTGT 2428359 37 100.0 37 NNNNNNNNNN ..................................... CGTGTTGTGACAGCCCGCGCCCATCGCCTCGCCCGAA 2428433 37 100.0 36 NNNNNNNNNN ..................................... GGGGCGCTCTCCGCCCCCTCCATTCTTATTATACCA 2428506 37 100.0 35 NNNNNNNNNN ..................................... GCAAGTTCGGCGCGACCGGACGATCCCGCATCTGG 2428578 37 100.0 37 NNNNNNNNNN ..................................... GCGCGCGAAGGGCTTTCATACTTGGGTTCTCGGCGAG 2428652 37 100.0 37 NNNNNNNNNN ..................................... GACGTTTTCGATACGCTTGACGCCGGAATCGCGCATC 2428726 37 100.0 35 NNNNNNNNNN ..................................... TTGATGCGTTACTTCAGACGATAGACCGCGCGGCG 2428798 37 100.0 35 NNNNNNNNNN ..................................... CGCGTCGCGCGAACAACACCGAAATCCGGTTAGAA 2428870 37 100.0 37 NNNNNNNNNN ..................................... AACAACCCGCCGCGCTGCCAGACTTCCACCAGCGCGA 2428944 37 100.0 39 NNNNNNNNNN ..................................... GCGGACGGGTGCGATGTGGACGATCTCAATCCAACCGTT 2429020 37 100.0 35 NNNNNNNNNN ..................................... ATTACACAGAAGCCGTCGCACTCGTCGAAGTCTGG 2429092 37 100.0 36 NNNNNNNNNN ..................................... ACGCACCATCAGCGCCACCCGCCGCTCGTCCATCCC 2429165 37 100.0 36 NNNNNNNNNN ..................................... GGTTCCGTCGGCGCGCGTGTTGCGTCAGTTGTGCAA 2429238 37 100.0 36 NNNNNNNNNN ..................................... GCCGCGCGGTCGATCCGCGTCGTCGGAAGTTACAAC 2429311 37 100.0 36 NNNNNNNNNN ..................................... AAGATGCTGTGTTGTGACACTGCTGAAAGACAACGA 2429384 37 100.0 38 NNNNNNNNNN ..................................... TTGAGTCCTCGTTGTACAGCACTGTCAATGTGATCTCA 2429459 37 100.0 35 NNNNNNNNNN ..................................... CATCAACGCGGCGGTGACGCTGTGGTTGTCGCCCC 2429531 37 100.0 37 NNNNNNNNNN ..................................... CCGATCTCGACTTCCGCAGCGCCTTCGTTGCGCCGGA 2429605 37 100.0 35 NNNNNNNNNN ..................................... ACTCCCGTCTGAGCGTGAGGCGAAGCAAAGACGGC 2429677 37 100.0 36 NNNNNNNNNN ..................................... AACTCTTGCACCTCTGGGAACCGTCGGTGAGGAGCG 2429750 37 100.0 37 NNNNNNNNNN ..................................... TCGACCGACCGACGCCGAACGCTCGCGGTTTGAACAG 2429824 37 100.0 39 NNNNNNNNNN ..................................... TCGGCGTAACGGTCAACGTCGACGCGCTGCTGGCGGATT 2429900 37 100.0 37 NNNNNNNNNN ..................................... CGTGAATACGAGGGCGAGTTGATAGGCGTCTGGAAAC 2429974 37 100.0 37 NNNNNNNNNN ..................................... GTTCCAAGACCCGAAAATCATTGATATCGAGGTCTGG 2430048 37 100.0 36 NNNNNNNNNN ..................................... CATTCCGGAACACCGCCCCGCCGTCGTCGAGAAACT 2430121 37 100.0 38 NNNNNNNNNN ..................................... CGCCCAGCGCGCCGCGCGCTGCCAGACATCCGCGTCGT 2430196 37 100.0 37 NNNNNNNNNN ..................................... TGTCAAGCCCCAATTTTGCGGAAAATCCGGCGATTTT 2430270 37 100.0 36 NNNNNNNNNN ..................................... TAACCCGGAGCGGCGGATCGTCGTTATACGCCCTAT 2430343 37 100.0 38 NNNNNNNNNN ..................................... GTCGCCACTGAAGATTAGGCATATCAAAGTCCCGTGTT 2430418 37 100.0 36 NNNNNNNNNN ..................................... GCAGTCGAGCGCTGTAATGCGCGTTCGATCCGATCC 2430491 37 100.0 36 NNNNNNNNNN ..................................... CGTGAGTACGCAAGATTCAGGTTTACCGTTGTTGAA 2430564 37 100.0 36 NNNNNNNNNN ..................................... CAGGAGAGCGCATTTAGGATCGTAGCCAGCAATTGC 2430637 37 100.0 37 NNNNNNNNNN ..................................... TGACGCGCATATGATCCTCTCCTGTTGACGTGATAAA 2430711 37 100.0 36 NNNNNNNNNN ..................................... GCCCTTGCCATTTGCGCGCCTAGCGGCTACCTGACG 2430784 37 100.0 36 NNNNNNNNNN ..................................... CTAATATCCGCACAATCCTAAACGCAATTATTCAGG 2430857 37 100.0 36 NNNNNNNNNN ..................................... GCGCGCGGGTTTATACAAGCCCGCTTGGATAGGGAA 2430930 37 100.0 39 NNNNNNNNNN ..................................... TTATCGCGCGCGTACACGCATTGCCTGACACACAATGTC 2431006 37 100.0 35 NNNNNNNNNN ..................................... CTGCGACAGCACAGGTATGAAGCAATGGTACAGGC 2431078 37 100.0 37 NNNNNNNNNN ..................................... CTAATATTTTCAGTTTATCCATAATCAACCTCAATCA 2431152 37 100.0 35 NNNNNNNNNN ..................................... TCTGGTAGCGCGCATTTTCGCCGCGCGTATCGTCT 2431224 37 100.0 37 NNNNNNNNNN ..................................... CGGTAGTGACGGGTTCAACTCCCCTGGTACTAATCAG 2431298 37 100.0 37 NNNNNNNNNN ..................................... ACCCGTACTGTCTCTGCCTTGCCCTTGCGGTTCATCT 2431372 37 100.0 37 NNNNNNNNNN ..................................... CGGTAGTGACGGGTTCAACTCCCCTGGTACTAATCAG 2431446 37 100.0 36 NNNNNNNNNN ..................................... TCAAGATAAGCCTTATACGCCGTATCAGCAAGTGTA 2431519 37 100.0 39 NNNNNNNNNN ..................................... GTAGGCTATCGGCATTATGATGATAGGGTTTTGGTACAG 2431595 37 100.0 37 NNNNNNNNNN ..................................... GTTCTGGTAGCGCGCATTTTCGCCGCGCGTATCGTCT 2431669 37 100.0 36 NNNNNNNNNN ..................................... CGGGTTCAAAGGGCTAAGCAAAGACGGTGTTTTTGT 2431742 37 100.0 35 NNNNNNNNNN ..................................... AGAGAGGTGATACGTTATATGTGGGAAGTCCAAAA 2431814 37 100.0 39 NNNNNNNNNN ..................................... GAAACACCGTGAAACTCCGTAAAACATCATATCACGAAT 2431890 37 100.0 38 NNNNNNNNNN ..................................... CGAATCTATGTCTTGTTGTGCGCAAAAATGTTACATAC 2431965 37 100.0 37 NNNNNNNNNN ..................................... ATTGTGACCGTTGTAGGCTACGCTCGGACGGTGAGAG 2432039 37 100.0 37 NNNNNNNNNN ..................................... TTGGCATATCGGGGCTACTGGTGTACCGAAAGCAGAC 2432113 37 100.0 37 NNNNNNNNNN ..................................... GTTACCACGCGCTTGCGCTAGCCGTATGCGCGCCTAG 2432187 37 100.0 35 NNNNNNNNNN ..................................... GCAACCCGGTACGAATCGAAATTGACGCGCATAGA 2432259 37 100.0 35 NNNNNNNNNN ..................................... GGAACCCCGCCGACGCCGGCGGGGTTTCCGGTCGT 2432331 37 100.0 38 NNNNNNNNNN ..................................... CACCGACAACGCTGACGTTCCAGAACCAACCGGTTGAG 2432406 37 100.0 40 NNNNNNNNNN ..................................... CGGAAGGGATGTCTCAAAGTGGGGATGGATCGAGTTCGAC 2432483 37 100.0 36 NNNNNNNNNN ..................................... CGTCTTCAGTTTCGCCGCGAACTCAACGGAGATTTC 2432556 37 100.0 38 NNNNNNNNNN ..................................... TTTGCCGATATCCGCGAATTACTGAAGAATATGGTGAA 2432631 37 100.0 38 NNNNNNNNNN ..................................... TCCGTCTGGTTCGACGCGGCGCGCTGGGCTGTCGAGTG 2432706 37 100.0 37 NNNNNNNNNN ..................................... TCGATAGTGGTCATAAACCGCTCTCAGGAACGTATCA 2432780 37 100.0 36 NNNNNNNNNN ..................................... AGCGTCTACCAGACGCTGGACGATGCGCGGAAGGAC 2432853 37 100.0 36 NNNNNNNNNN ..................................... TTGGCAGAAGGGGGGTGATCATATGGCGCTTGTCGC 2432926 37 100.0 36 NNNNNNNNNN ..................................... TTTTCCGAACATCAGCGCAATTATACGAATTGTGAG 2432999 37 100.0 36 NNNNNNNNNN ..................................... TGTGTGACCGAGTGCGGCTACACGACGTTGCTTGAC 2433072 37 100.0 37 NNNNNNNNNN ..................................... GGAGCGCGTGGCGGGTGTTTAGGTCGCTGAGTTAGCG 2433146 37 100.0 37 NNNNNNNNNN ..................................... CATCATCGACATCCACCCAGCGCGTGCAATCGACCGC 2433220 37 100.0 36 NNNNNNNNNN ..................................... GTAAGCGAGCGGCGGCGCGGTTGGTGGCGCGCCGGA 2433293 37 100.0 41 NNNNNNNNNN ..................................... TTGATTGCGGCCAAAAGCCAAACGTCGAATCAAGTTCTTGA 2433371 37 100.0 36 NNNNNNNNNN ..................................... ACGACCCGACAAAATGACCGCATTTTACGAAGCAGA 2433444 37 100.0 37 NNNNNNNNNN ..................................... GAGGAATTGCGCTTCGAGATCGACCGCGCCCGCGCCG 2433518 37 100.0 40 NNNNNNNNNN ..................................... TCTCGATGTCGAGGTAGCGCTGGTTGATGCGCATCGCGTC 2433595 37 100.0 37 NNNNNNNNNN ..................................... TGGCAGACAAACGCCGGATTTTGGTTCGCCGACGCGC 2433669 37 100.0 37 NNNNNNNNNN ..................................... GCGCCTGCAGCGTCTCCTTGCCGACGCCCCGCGCGGC 2433743 37 100.0 36 NNNNNNNNNN ..................................... TTCTCGGCGTCGTTGAGGTAGCGCGCGCAGACGACT 2433816 37 100.0 36 NNNNNNNNNN ..................................... GCGTGAGGAGCGGTCGCCGGGCAAACGCGGCGAAAA 2433889 37 100.0 36 NNNNNNNNNN ..................................... GCTGACCGGGCGGGTGCATCCACACTTGAAGATCGC 2433962 37 100.0 35 NNNNNNNNNN ..................................... CCATCCGTTGTCGGACGGGGCTTGTCGGATTCGGT 2434034 37 100.0 37 NNNNNNNNNN ..................................... CGCCTTCGGGTCGCGCACCCCCAGCGCCGGCGCGTCC 2434108 37 100.0 36 NNNNNNNNNN ..................................... GCAGTCGCAGCGCCTTATAGAGCAGCGCCTCGGCGC 2434181 37 100.0 36 NNNNNNNNNN ..................................... TCATAATGCGGTGGGGTTGGAGGTGCGTCCGATTGA 2434254 37 100.0 37 NNNNNNNNNN ..................................... CGTCGCCGGTTCCGGCGCGCCGTTCGCGCGCGAAACG 2434328 37 100.0 36 NNNNNNNNNN ..................................... TCGACGAAGCGGCGCAATTCTTCCGAGAATTCAGTG 2434401 37 100.0 36 NNNNNNNNNN ..................................... CAAAGCGCGTTTGATTATTCTCGCCGACGCCGACGT 2434474 37 100.0 35 NNNNNNNNNN ..................................... CGACCGCTTTCGTCCAGTCCTCAAGTTCTTGATGC 2434546 37 100.0 38 NNNNNNNNNN ..................................... CCGGTCGTTAGCCTAGCACACAAGTTCCCGTCTGTCAA 2434621 37 100.0 37 NNNNNNNNNN ..................................... GGTCGTAGTATCGGTCGCTGTTGCGAAGGACAACGAC 2434695 37 100.0 36 NNNNNNNNNN ..................................... TTTGGTCTCAACGTACACGTTGATCTCGCGCTCAAG 2434768 37 100.0 37 NNNNNNNNNN ..................................... TTTCGATAGTAGCGTTCGCTTCCCAGCGACCGTCAAT 2434842 37 100.0 37 NNNNNNNNNN ..................................... TCTGCGCCCCAGTCGTCGAGCGCCGCAAGCAGCGCGT 2434916 37 100.0 35 NNNNNNNNNN ..................................... GTTGGTGGCGCTGCTGCTCCGCGACCCAGCCGTTC 2434988 37 100.0 38 NNNNNNNNNN ..................................... ATCGCCCGTCACACCTTCCCCCGCCGCCGGGCGAACGC 2435063 37 100.0 35 NNNNNNNNNN ..................................... GCGAGACCGCGCCCGCCAGCGACCGGTTCTTCTTC 2435135 37 100.0 35 NNNNNNNNNN ..................................... TCAGCGATTGAACCACATCAAGCGCTTCGTCGCGG 2435207 37 100.0 36 NNNNNNNNNN ..................................... TCAAAAAGAGCGCGAATCAGTTCTTCCGCCTCCGCG 2435280 37 100.0 36 NNNNNNNNNN ..................................... CTAACATTCCCACTATTCGCGCCCCGGTACACCGCC 2435353 37 100.0 37 NNNNNNNNNN ..................................... ACAACTACCCGAATATCGTTGTCATCCGGTCGGCAAA 2435427 37 100.0 39 NNNNNNNNNN ..................................... TGTTCATTTATTCGCCGTCGGTCGGGACGGGCGTCTCAA 2435503 37 100.0 38 NNNNNNNNNN ..................................... CGCGAACTGGAGAACGACTTCCGCGTTTCGCGCGCGAA 2435578 37 100.0 39 NNNNNNNNNN ..................................... TATATTGATTCGGTGTGCGAAGCCGCGCCCGCAACGAAC 2435654 37 100.0 40 NNNNNNNNNN ..................................... CGATGTGTTGTGACACTGGTACTGCTGATGGAACAACAGC 2435731 37 100.0 36 NNNNNNNNNN ..................................... CCAGAACAGAAAACGGCGCGCGCGTTGACCGCGAGT 2435804 37 100.0 35 NNNNNNNNNN ..................................... TACTATAGGCTAGCCCTAGCCGTTTGCGCGCCTAG 2435876 37 100.0 41 NNNNNNNNNN ..................................... TTCTGACGTTGCTGCCGACGCTGATCGAGTTGGCGACGGTC 2435954 37 100.0 37 NNNNNNNNNN ..................................... CAGGTTTTTGGTTTGCCGACGTTTTCGTTGAGCGCGA 2436028 37 100.0 37 NNNNNNNNNN ..................................... TTCAGTCCGTCCCAAGGCTTGCCGATGCGCCGGGACG 2436102 37 100.0 39 NNNNNNNNNN ..................................... TCGACCGCGCGCTGGTTGCGGACGCGGCGCGGGGTGTTG 2436178 37 100.0 37 NNNNNNNNNN ..................................... GTGTTCGTCATATCGCACAGCCCGACCAGCCCATTGA 2436252 37 100.0 36 NNNNNNNNNN ..................................... TGATCATCCACACCGGCAACGGTCTGATGCCGATGT 2436325 37 100.0 37 NNNNNNNNNN ..................................... CGAGGTCGAGGTAGCGCTGGTTGATGCGCATCGCGTC 2436399 37 100.0 36 NNNNNNNNNN ..................................... CGGCGAGCCGAACCTGCTGAACATCCCGCGCGGCGA 2436472 37 100.0 38 NNNNNNNNNN ..................................... TCGGAGGCGGCGAAATGCTACCCGCGCGTGCTGTCGGT 2436547 37 100.0 36 NNNNNNNNNN ..................................... GGGCGCGTGGGACACCTCACGCGCTTCGGCGTTGAC 2436620 37 100.0 37 NNNNNNNNNN ..................................... CCAGACGCGGTACAACTCGAAAAAGCGGCGCTTCTCC 2436694 37 100.0 1 NNNNNNNNNN ..................................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 127 37 36 GTTTCAGTGCTCTTCAGCGAGCCGAAAATTCCTCAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.05%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [46.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1345,292] Score: 0.18/0.18 # # Final direction: F [0.45,0.37 Confidence: LOW] >NC_009523 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 3151615 35 100.0 38 GTGCGAGGGA ................................... GCACGGGGGCGGGGTCTACCCCGCCCGATCCAATCTGG 3151688 35 100.0 40 TCCAATCTGG ................................... GCCTGGAGGGACGGGTCGTTTGCCAGGATGTTCCTAAGGC 3151763 35 100.0 37 TTCCTAAGGC ................................... GCTTCGCACCACGCCCGCCACACGGCGGCGATTCCGG 3151835 35 100.0 39 GCGATTCCGG ................................... GCTCAGTGTTGGCTCCGGACCAAACTGCGGACTGTGCGT 3151909 35 100.0 40 GACTGTGCGT ................................... GCCGCGCTCGCTGTCCTCGCCGCATGGCGGGAAGCAGCGG 3151984 35 100.0 39 GAAGCAGCGG ................................... GACGAGCTCACTCTCGGAGATGCTCCGCGCGATCTCGGT 3152058 35 100.0 41 CGATCTCGGT ................................... GTGACCTGGCGCCGCCGGACGCGGCGGGTGCGGCGGACGCC 3152134 35 100.0 37 GGCGGACGCC ................................... GTTTGGTTCGCACTCGTAACCCGGATATGGATCATAC 3152206 35 100.0 39 TGGATCATAC ................................... GTCCTGCGACGTCAGCGACAGCGCGACGCCCAGCGCCTG 3152280 35 100.0 40 CCAGCGCCTG ................................... GTTCAGCGCCTCCGCGTCTCCCTCGACCTTCTTCAGCTGA 3152355 35 100.0 40 CTTCAGCTGA ................................... GAGCGCCTCAATCAACGTGCTCTCGTCGACAACCTGCGGA 3152430 35 100.0 40 AACCTGCGGA ................................... GACCTCCTTCTTGTTCATTTAGAAGTGCAAGCCAGAGCGA 3152505 35 100.0 40 GCCAGAGCGA ................................... ACCCGCCCGTCTCCGCGACCAGGCGCTGCGCCTGGTCGCG 3152580 35 100.0 40 CCTGGTCGCG ................................... ACTCGTCGGAGACCGCGGCCAGTTCTTTCCGAATGCGTTC 3152655 35 100.0 40 GAATGCGTTC ................................... ACATTAACGTTCGGTCCCATTCCATATATACGGTCCGTGG 3152730 35 100.0 39 CGGTCCGTGG ................................... ACAACACTAAAGTGGAGGGAGGCGTATAAGTGACTACGC 3152804 35 100.0 39 GTGACTACGC ................................... ACCCGCATCCGACTCGCACTTGGCTAACTTCGCCTGAAG 3152878 35 100.0 38 TCGCCTGAAG ................................... ACGATACCGGTCCGTCATGTTTCTCCTCCTTTGCCCGC 3152951 35 100.0 39 CTTTGCCCGC ................................... ACGAACGACCCGGCGCTCGGCGTCGCGCGCGCGCCTCTC 3153025 35 100.0 38 CGCGCCTCTC ................................... ACGCGACGCCGAGCGCCGGGCCGCGCGGCTTGGCGCGG 3153098 35 100.0 39 CTTGGCGCGG ................................... ACAGCGGACCGCGCCGCGGTAGACCTCCACGGCGTCATC 3153172 35 100.0 39 CGGCGTCATC ................................... ACAAGACGACGAGGAAGATAGCAGCCACCAGGCATCCTT 3153246 35 100.0 38 AGGCATCCTT ................................... ACCAACTCGCGCCGCCGCTTCACGCTGCGCGCGCTCCG 3153319 35 100.0 GCGCGCTCCG ................................... ACACAACGTT ========== ====== ====== ====== ========== =================================== 24 35 39 GAAGCGACCACTGCCCCGCAATGAAGGGGATTGAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [11,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.10,-7.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [36.7-35.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [159,5040] Score: 0.18/0.18 # # Final direction: F [0.74,0.18 Confidence: MEDIUM] >NC_009523 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================== ====== 3153545 34 100.0 42 CCTCCCCGGA .................................. AACACGGTCAACGACATGCCCGGTCTTCACCGTCCCCAATAT 3153621 34 100.0 38 TCCCCAATAT .................................. AACAAATAAAAGAAGAATGCGTGTTGTGACGGCGAAGG 3153693 34 100.0 41 ACGGCGAAGG .................................. AACTTTCGATTTGGTTCTCGAGTCGCTGGCGACGCTCTGGA 3153768 34 100.0 40 ACGCTCTGGA .................................. AACAGGCACGCCGTGCGGCGGCGCCAGTCTTGTCCAGCTG 3153842 34 100.0 43 TGTCCAGCTG .................................. AACAACTAGCCAAGGCGGAATTTGATGCCGAGGCGCTGCTGAA 3153919 34 100.0 39 CGCTGCTGAA .................................. AACAGGGGGTCCCCCCCCACAGCGTTTCGCAGCCGCTCG 3153992 34 100.0 41 CAGCCGCTCG .................................. AACTTTCGCAGCCGCTCGATGATCGCCTCCGCCTCCGTGAG 3154067 34 100.0 41 CCTCCGTGAG .................................. AACGATATGGATCTATTTTTTGGAGGTACGCGGCGTAGCAT 3154142 34 100.0 38 GGCGTAGCAT .................................. AACTTCGCCCGCGCTTCCGCCTCGGCCCGAGCGGCCGC 3154214 34 100.0 40 GAGCGGCCGC .................................. AACTTCTTTGCCCCGAAACCCCGCCCGCCTTCGGCAGACG 3154288 34 100.0 40 TCGGCAGACG .................................. AACTTTCTTCCGCCTTCTTCTCTTCCGCCTTCTTGTTCTT 3154362 34 100.0 43 TCTTGTTCTT .................................. AACGCTTCCTGCTGCGCCCGTTGCTCTGCCTCCGCGCGGGAGA 3154439 34 100.0 41 GCGCGGGAGA .................................. AACCTGCCTCCGCGCGGGCCGCCGCTTCCTGCTGCGCGCGC 3154514 34 100.0 40 CTGCGCGCGC .................................. AACTTTTCTCCTCCTTGCCCCCCCGCCGTGCGGCGGGATG 3154588 34 100.0 41 CGGCGGGATG .................................. AACTAAACTCATCTGGCGTACCCAGAGTCGAGTGAGTGCGA 3154663 34 100.0 41 GTGAGTGCGA .................................. AACGCTGCCAGTCGGTTCCACTGTCTGGTAACCGTCTTCCA 3154738 34 100.0 38 CCGTCTTCCA .................................. AACCTTCTCGCTTTGGATGACGACCTTAATCCTCCCTC 3154810 34 100.0 42 ATCCTCCCTC .................................. AACCTGCTCCTCCGCAACCGCACGGGCTCCCGCCTCCGCCCA 3154886 34 100.0 44 CCTCCGCCCA .................................. AACGTACGGCGGGGAGATCCCCATGGCCGGCGCCCCTCCCCGGA 3154964 34 100.0 42 CCTCCCCGGA .................................. AACACGGTCAACGACATGCCCGGTCTTCACCGTCCCCAATAT 3155040 34 100.0 38 TCCCCAATAT .................................. AACAAATAAAAGAAGAATGCGTGTTGTGACGGCGAAGG 3155112 34 100.0 41 ACGGCGAAGG .................................. AACTTTCGATTTGGTTCTCGAGTCGCTGGCGACGCTCTGGA 3155187 34 100.0 41 ACGCTCTGGA .................................. GACTCCGCCTCCTCCACGAGCGTCCACGCCGGGCGCGCCTC 3155262 34 100.0 39 GGCGCGCCTC .................................. GACGCGAGGGGGAGATCGGGCCGCGCAGCGGGCGCAGAT 3155335 34 100.0 40 GGGCGCAGAT .................................. GACGCGTCGTCCTCCTCGCCCCGCAGCCGGTCGAGGAGGT 3155409 34 100.0 41 TCGAGGAGGT .................................. GACCTGCAGCAGCAGGGGGGGCGGGATCACGAATGATCCCA 3155484 34 100.0 39 AATGATCCCA .................................. GACCAGACGATATCCTCGTCCGCGCCGGCGACCGCGCGC 3155557 34 100.0 40 GACCGCGCGC .................................. GACGTCGCCAGACGCTGCTGGCGCTCGATGCGACCTGGAC 3155631 34 100.0 42 CGACCTGGAC .................................. GACCCTGTTTTGTTGCAGGTACGCCTGTGTATACAGCAAATG 3155707 34 100.0 40 ACAGCAAATG .................................. GACTAGCTCACGATTGTACATTTAGAGTGCATCGCCAAAG 3155781 34 100.0 40 ATCGCCAAAG .................................. GACATAGTCACAACTAGGCTAAGGCACCCTTCAAGCGCAA 3155855 34 100.0 38 TCAAGCGCAA .................................. GACCTGGTGGGGTTAATCGACCGGGATCCGGAGCGCAG 3155927 34 100.0 40 CGGAGCGCAG .................................. GACACCGCCGCCCTTCGCACTCGTAACCCGTACGTGTAAC 3156001 34 100.0 41 TACGTGTAAC .................................. GACCGGCTTCCCGCGCCGCCTCCGCGCGCCACGCCCGCCAC 3156076 34 100.0 42 CGCCCGCCAC .................................. GACAACGCGCCCCCGGCGGCGCCGGGAGCGGGGGAGGGACAA 3156152 34 100.0 44 GGAGGGACAA .................................. GACTCCTTGCCCCCCCGCCGTGCGGCGAGGCGGGCATTCAACAT 3156230 34 100.0 38 CATTCAACAT .................................. GACACGATGTCGCGGGAGGACCTCGCCCGATCCAGATT 3156302 34 100.0 40 GATCCAGATT .................................. GACCTCCCGGACCCCCTCTCCCGATGCCGCAGCATCATTG 3156376 34 100.0 42 AGCATCATTG .................................. GACACGGCGAGGCGCGCCGCGGACCCGCCGGCGCGCGCCGGA 3156452 34 100.0 41 GCGCGCCGGA .................................. GACCTGCGAGACGGCGTCTCTCAGCACAACTAAGGCGTTCC 3156527 34 100.0 38 AAGGCGTTCC .................................. GACTCGACGAGCGTGCGCTCGTCGACACGCTTCACGAT 3156599 34 100.0 39 GCTTCACGAT .................................. GACGCGCCTGCGCCTCCGCATGCGCCCGCCATACGGCGA 3156672 34 100.0 41 CATACGGCGA .................................. GACTCGCAGACGGCGTGCCAGAGGTCATCGTTGAGCGCCAG 3156747 34 100.0 38 TGAGCGCCAG .................................. GACAAGATCTCCTCGATGTCGTCCATACTCCCTCCTTT 3156819 34 100.0 42 TCCCTCCTTT .................................. GACACGGCGAGCGCTGCGACAACCAGCGCCGTCGTCGAGAGA 3156895 34 100.0 41 CGTCGAGAGA .................................. GACTGGTGGTCCTCCTTGCTGCCCCCCGCCTTGCGGCGAGC 3156970 34 100.0 41 TGCGGCGAGC .................................. GACGAGATGATGACTCCGACTTCCATGTGGTGGTCCTCCTT 3157045 34 100.0 37 GGTCCTCCTT .................................. GACACGGGTCGTTTTCCAACACGTGCCGCAGGCGCTG 3157116 34 100.0 40 GCAGGCGCTG .................................. GACGTCTCCGGCGCTGCCGCCGCCGCCGCCGCCGCGTCCG 3157190 34 100.0 41 GCCGCGTCCG .................................. GACTAGACGAAGTGCCTTGAGGGGAAAAGGAGCAAAGTCAA 3157265 34 100.0 41 GCAAAGTCAA .................................. GACAACTATCCGTCCAACTTACTAACTCACCAACAGCCTTA 3157340 34 100.0 41 AACAGCCTTA .................................. GACATTAGCATAAAAATAACCGCTGCTAACGCAGCCAGCAA 3157415 34 100.0 40 CAGCCAGCAA .................................. GACATCTAATATAAGGATAGCGTCGTCTAATCGGGATACC 3157489 34 100.0 41 TCGGGATACC .................................. GACATGACTTCCATCTCTTTTTCCTCCTTGCCCCCCCGCCT 3157564 34 100.0 40 CCCCCCGCCT .................................. GACTCGGAGGTCGCGTCCAGCCCCTTGCGGAGCTGGACGG 3157638 34 100.0 40 AGCTGGACGG .................................. GACGAAACCCCGCCCGCCTTCGGCGGGGCGGGGCTGACAC 3157712 34 100.0 45 GGGCTGACAC .................................. GACCCCCGTTGATCCCACATTGGAGGTTGCACCCCCCGAGTCGAA 3157791 34 100.0 39 CCGAGTCGAA .................................. GACGCCAAGGACAACCTAACTCCGTGGAGGTCCGGGTCC 3157864 34 100.0 42 GTCCGGGTCC .................................. GACCGTCGCGCGCCGCAAGCGCGGCGACGACGGCGACAGCCT 3157940 34 100.0 GCGACAGCCT .................................. GACACGAGGATGACAAGCCGCCACCCGGGCGGCTCGTCGAGA ========== ====== ====== ====== ========== ================================== 60 34 40 GAAGCGACCACTGCCCCGCAATGAAGGGGATTGA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [10,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.10,-6.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [33.3-31.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [2089,420] Score: 0.18/0.18 # # Final direction: F [0.92,0 Confidence: HIGH] >NC_009523 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================== ====== 3781974 34 100.0 41 TCGCACGGTC .................................. CGGGGGGCAAGGAGGAAAGAAAAATGTTCTTTGAATTTGTT 3782049 34 100.0 38 TGAATTTGTT .................................. GCTTGCCTGGCGCAGGCGCCGGACGACGCGGACGTGTC 3782121 34 100.0 40 CGGACGTGTC .................................. TGTTTGGGGGGTGGTGGAGTGGAGGTACGACCTCCACGTC 3782195 34 100.0 39 CCTCCACGTC .................................. TTATCTTGGCGGACCGAAGGACGATGACGACGACGAGTC 3782268 34 100.0 40 ACGACGAGTC .................................. TGATAAACAGTTGGACCCGAGTGCGTATCGTTTATAAGTC 3782342 34 100.0 41 TTTATAAGTC .................................. AAGGGGACTAGTAGTCCCCGCCCCCCGCCGCGCTCGCCGTC 3782417 34 100.0 41 GCTCGCCGTC .................................. CTTTCCAGACGCCGTCCTTGGGGGACGATTTTAAACTGGTT 3782492 34 100.0 41 TAAACTGGTT .................................. GGTCTCCCAGGCGATGGACAATCTCACGCCCTTCAAGGGTT 3782567 34 100.0 40 TTCAAGGGTT .................................. CCATCGCCTGGGGGGTCCGGGTCTCCCCCAACAAGAAGTT 3782641 34 100.0 41 ACAAGAAGTT .................................. CTATTATGGGATTCAAGTCTAAACGACTGGCCCATCTTGTT 3782716 34 100.0 38 CCATCTTGTT .................................. GGAAACCGTGGGTCCGAGGTCGTGGGAACCGTCATGTT 3782788 34 100.0 39 CCGTCATGTT .................................. CAAGCGCGGGCACAGAAGGAGATCGAATTGCGCAAGGTT 3782861 34 100.0 37 GCGCAAGGTT .................................. CTGGGGCAAGGAGGAAAAATGGAAGCTCTGTTTTGTT 3782932 34 100.0 41 CTGTTTTGTT .................................. GCCGCGCCGCCCGCCAGAGGAGGTATGAGATGAGTCATGTT 3783007 34 100.0 42 GAGTCATGTT .................................. CGCGCAACGAAAGGAGAACATATGAACCCGAATATTCATGTT 3783083 34 100.0 43 TATTCATGTT .................................. TCCGCTTACAAGGCTCTGGGTACGCCAGATGAGCCTACGTGTT 3783160 34 100.0 43 CCTACGTGTT .................................. ACTCGATATTACAGGTCGTATTGCAGGGTTTGCCAAGTTTGTT 3783237 34 100.0 41 CAAGTTTGTT .................................. CCCTCGGGATGCTTGCTCTCCTGGCAGGAGGCCTTTTTGTT 3783312 34 100.0 40 CCTTTTTGTT .................................. CTGCAGACCATAGTATCGTTAGTAACGGGGGTTTTTTGTT 3783386 34 100.0 41 GTTTTTTGTT .................................. CCTTTTTAGCCCCTTTTGTGCCGGTGATTGTTTTCCTTGTT 3783461 34 100.0 39 TTTCCTTGTT .................................. GATTTCCGGAAATTTCGGATGTTATTTCCTTTCAAGGTT 3783534 34 100.0 38 TTTCAAGGTT .................................. AATCTTGGGGCGTGTACTTTTTGTACACACTGTACGTT 3783606 34 100.0 40 ACTGTACGTT .................................. ATGGACGACAACCAGTCAAACCAGTCGCCGGACGAGCGTT 3783680 34 100.0 40 GACGAGCGTT .................................. GACGCGGGAGACTGAACTTCCGCTCGCAATGGTGCGGGTT 3783754 34 100.0 41 GGTGCGGGTT .................................. GGGCGCTGTCACAACGCATTCCCTGGGAGGGGGTTTCCGTT 3783829 34 100.0 40 GGTTTCCGTT .................................. TATGGGCGACCGCCGTCCGCGCCGCCGCCGTCGATGAGTT 3783903 34 100.0 40 TCGATGAGTT .................................. TCGACGTTCACCGGAACGTGGACGAGAAGACACTCGCGTT 3783977 34 100.0 40 CACTCGCGTT .................................. TAGTTCCCTATGTGGTAGCGTCTTTTATGTTCTTCATGTT 3784051 34 100.0 40 TCTTCATGTT .................................. AGGAACGCATGATCGAACCGACCACCTCACCGACCACGTT 3784125 34 100.0 39 CGACCACGTT .................................. ATGTCCGCCGGTTCATCTGGCTGGACAACTACGGGTGTT 3784198 34 100.0 40 TACGGGTGTT .................................. GGCTGGACGATCTAGTTTTTATACTAGATGTTGCAGTGTT 3784272 34 100.0 41 TTGCAGTGTT .................................. CGGCGGCGGCGGCGGCGCGCCCCCTCCCACCCCCTCGAGTT 3784347 34 100.0 40 CCCTCGAGTT .................................. GGCACGTCGCGGGGTTCGTGACCAACGTGCGGCTCTCGTT 3784421 34 100.0 42 GGCTCTCGTT .................................. CGTCCGCCTCACGATCCGCCCGCTTGGGCGGTTCGGCGAGTT 3784497 34 100.0 43 TCGGCGAGTT .................................. TCCGTCCAGGTCGCATCCAGCGCCAGCAGCGCCTGGCGCCGTT 3784574 34 100.0 40 TGGCGCCGTT .................................. CTGCGGGAGGCGTTCCCGCGCCCCGGCGCCGCGCTGTGTT 3784648 34 100.0 40 GCGCTGTGTT .................................. GATTATCGACGCGATCGCCCCGGTCGCAGATGTGATTGTT 3784722 34 100.0 41 TGTGATTGTT .................................. GGAACGCCCCCCTCCCCCGAAGGGGGGAGGGCGATCCGGTT 3784797 34 100.0 40 CGATCCGGTT .................................. TGGAATCCGCACCGACACGCTCGATCTGAGCGTGCCGGTT 3784871 34 100.0 39 CGTGCCGGTT .................................. CCTCGCCATGCGCCGCGCCGACGGGCAGGGCATGCTGTT 3784944 34 100.0 39 GCATGCTGTT .................................. CCTCCAAACTGAGTAAGTTTGGCTCTCCTGACCCACGTT 3785017 34 100.0 41 GACCCACGTT .................................. TCCGGGAGCAGGCCGAGCAGCTTCGAAAGGGGCTGGAGGTT 3785092 34 100.0 40 GCTGGAGGTT .................................. GGGACACCTACCGGGCGGCGCTCGATGCAGCTCTCGAGTT 3785166 34 100.0 41 CTCTCGAGTT .................................. CTCGAGGCGCGGGCCGCGCGCCTTGGCGGCGAGCTCGTGTT 3785241 34 100.0 41 AGCTCGTGTT .................................. TTTAGCAGTTCGCCCATCTCCGTTTTTTAATCTGGAATGTT 3785316 34 100.0 40 CTGGAATGTT .................................. AAGCGCGCGCGCGGCGGGACGCCGAACGGCGCGCTGCGTT 3785390 34 100.0 40 GCGCTGCGTT .................................. CGACCTCGCGGATTCCCGCGCCGACGCGTATCGGAACGTT 3785464 34 100.0 40 TCGGAACGTT .................................. CAGCGCGAAGTTGGAGGAGAGGCGCAGTATGAGTCTAGTT 3785538 34 100.0 41 GAGTCTAGTT .................................. CGGCGGCGGCGGCGGCGCGCCCCCTCCCACCCCCTCGAGTT 3785613 34 100.0 43 CCCTCGAGTT .................................. GGAGGTACGCGGCGTAGCATACGCAGCGTGCCTTGACGAGGTT 3785690 34 100.0 42 TGACGAGGTT .................................. TCGCGTGGCGGAGCCGCACCCGGAGCGCCAGCGTATCTCCGT 3785766 34 100.0 40 GTATCTCCGT .................................. TCACGAGATCCGGAGGAAGCTGGAGAAATGCCAGTTCGAT 3785840 34 100.0 38 CCAGTTCGAT .................................. TCGGGAACCAGCAGTGCGTCGACCGCCATCGGGTCGGT 3785912 34 100.0 42 TCGGGTCGGT .................................. TCCCCCCGAAGGGGGGGGGCGAGCCGTTTGCATTCCCGCCGT 3785988 34 100.0 42 TTCCCGCCGT .................................. TCATCGTTTCCATTTCCTTTCTCCTTGCCCACCCGCCGTGGT 3786064 34 100.0 39 CCGCCGTGGT .................................. TCGAAAAATGAGTACCATCTTTGTGGTGGCGGCAGCGGT 3786137 34 100.0 42 CGGCAGCGGT .................................. TCGCACAAAGTGGGGCGCGGATTACCTGATAACAGCGGAGGT 3786213 34 100.0 41 CAGCGGAGGT .................................. TCGATCCAATCCGGATCGGTCGGGGGAGACCCCGCCCCCGT 3786288 34 100.0 CCGCCCCCGT .................................. TCTCCCTCGC ========== ====== ====== ====== ========== ================================== 59 34 40 TCAATCCCCTTCATTGCGGGGCAGTGGTCGCTTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [38.3-36.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [2244,161] Score: 0.18/0.18 # # Final direction: R [0.18,0.74 Confidence: MEDIUM] >NC_009523 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================= ====== 5439359 33 100.0 34 GATCGCGCCG ................................. GCTGCTGGTCAACCGCGACACCGGCGAGATGGAA 5439426 33 100.0 35 CGAGATGGAA ................................. CCAATGCGCGCCAGTTCAAACGCCAGCACTTCGAT 5439494 33 100.0 35 GCACTTCGAT ................................. CGCGGCGGTATATGCAGCGCTGCCCGCCCGCAGTC 5439562 33 100.0 36 GCCCGCAGTC ................................. CGCCGGCAGCAGCGTCGGTGCAACGACGCCCGCGAC 5439631 33 100.0 34 CGCCCGCGAC ................................. ATGCGCAGCCCGCAGTACTCTATCGCTGCGGTCG 5439698 33 100.0 35 GCTGCGGTCG ................................. CGGCAGCGGCGCTAACCCCTCGGTCAGCCCGCGCA 5439766 33 100.0 36 AGCCCGCGCA ................................. TCGGCGCTGATCGGCGATGCGATCCACGCGCATCTC 5439835 33 100.0 36 CGCGCATCTC ................................. CAGCCGGTTCACCAGGTCAAAGATTGCCGTTTGCGC 5439904 33 100.0 35 CCGTTTGCGC ................................. CCGGAGACCGAGTGTACCTACTGAAGCTTCGTCAA 5439972 33 100.0 34 GCTTCGTCAA ................................. CGAGCGGTTGTCGCTGTTGTATCTTTACTCCAAA 5440039 33 100.0 36 TTACTCCAAA ................................. CCGCCGGAATGATATACCCCTCAACCGGCGTCTGCT 5440108 33 100.0 35 GGCGTCTGCT ................................. CGGCGCGCTCAGCAGCAGCACCGCCAGCGTTGCGA 5440176 33 100.0 34 AGCGTTGCGA ................................. GGCGGCGGCGTACCGATTTGGCGCGTCTGTTGGA 5440243 33 100.0 34 GTCTGTTGGA ................................. GCTCATCCGCCATCTTGCGCAAGTACTCCAGGAA 5440310 33 100.0 35 ACTCCAGGAA ................................. CTAGCGGGTTGCGCGTACAACGTATACGTATCAGG 5440378 33 100.0 33 ACGTATCAGG ................................. TTCAGACGCCGATATGATTCCCAGTGTGTACGA 5440444 33 100.0 35 GTGTGTACGA ................................. GTGTACGAGTCGCACACCTGGGATGGTTCACGATG 5440512 33 100.0 33 GTTCACGATG ................................. CGGACGCATCCCGGATGCGTTGAGTATGGGATG 5440578 33 100.0 34 GTATGGGATG ................................. CTTGAACGCGCCGAATCAGTTCGGATTACGCGCT 5440645 33 100.0 36 ATTACGCGCT ................................. GTGCAGGGGGGTTGAACGCATTGCGTCATACGCGAT 5440714 33 100.0 36 CATACGCGAT ................................. ATGCTTCCATCCGTGTTGATGATTGCGGGTTCGAGT 5440783 33 100.0 34 GGGTTCGAGT ................................. TCAGCGGCAACAGGTTCATCAGGTTCGGGGGGGG 5440850 33 100.0 33 TCGGGGGGGG ................................. CAGTACGGAGTTTTCCGACTCGGTCGGGAGTCG 5440916 33 100.0 35 TCGGGAGTCG ................................. ACGGTTTTGATCTCGCTTGACAGCGCGAGATGCCG 5440984 33 100.0 34 CGAGATGCCG ................................. CTAACCGTATCTCGGTGTTGTTCGCGCGCCGGAT 5441051 33 100.0 35 CGCGCCGGAT ................................. ATAATGGGTACGAGTGCCAAAGCGGTTTATCTCTT 5441119 33 100.0 34 TTTATCTCTT ................................. TCCCTATCAACTGTCCTTCATACTCGCGCCAGAC 5441186 33 100.0 33 CGCGCCAGAC ................................. ACCAACACGACGACGTGGTTCGCAATGACCGAA 5441252 33 100.0 35 AATGACCGAA ................................. ACAGACCCCGACATACCAACCGAGATGAGGACGCG 5441320 33 100.0 33 TGAGGACGCG ................................. GCCAGCGCCTCAAGCACCTTCGCGGCTTTCGGC 5441386 33 100.0 34 GGCTTTCGGC ................................. TGAGGTGACGGATGTACGCGACGCTGGCGCAGTT 5441453 33 100.0 33 TGGCGCAGTT ................................. ACAGCGTACTACGTCTACAGGACGGAGAGTGGA 5441519 33 100.0 34 GGAGAGTGGA ................................. CTACGGACACATCTTCCGGTTCCGCAACCTTGAG 5441586 33 100.0 34 CAACCTTGAG ................................. CTATGCCGAGGGGAGGAAGGTAATCTACGAGTAT 5441653 33 100.0 CTACGAGTAT ................................. CGCAATATCT ========== ====== ====== ====== ========== ================================= 35 33 34 GTTTCAATCCACGCCTTCCGGGGGGAAGGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [6,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.30,-5.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [5324,164] Score: 0.18/0.18 # # Final direction: R [0.55,4.77 Confidence: HIGH] >NC_009523 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3854177 29 100.0 32 GAGTCGTGGT ............................. CACCCCAACGCGAACGCGCGTTCTGACCAGTC 3854238 29 100.0 32 CTGACCAGTC ............................. CGTTTTCCGCAAATTATTGTCGCTGTGTTGCA 3854299 29 100.0 32 CTGTGTTGCA ............................. TATGGACAATCTGTTGCCGGACATTGACGTGA 3854360 29 100.0 32 ATTGACGTGA ............................. TTCGGCGACGCGCCGACATTGGCGGAGTGGAA 3854421 29 100.0 CGGAGTGGAA ............................. GTTCGCCCGGT ========== ====== ====== ====== ========== ============================= 5 29 32 CACCGCTCCTCGCGCACGCGGTTACAGCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [4,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [46.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2063,55] Score: 0.18/0.18 # # Final direction: F [0.82,0 Confidence: HIGH] >NC_009523 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 797193 29 100.0 32 GACTAGCATG ............................. CTGACCGCTATCGACGTGCTGATGATTGCGCA 797254 29 100.0 32 TGATTGCGCA ............................. ACCAGGGCATCCCAGCAGGCGGGTCTATCACA 797315 29 100.0 32 GTCTATCACA ............................. CTGACCGCTATCGACGCGCTGATGATTGCGCA 797376 29 100.0 31 TGATTGCGCA ............................. TGGCGTTTCAGCCAGTTCCTGATACGGCTCG 797436 29 100.0 32 ATACGGCTCG ............................. GTTCCGCAACCGCTGTCACAACACACGCTTCT 797497 29 100.0 32 ACACGCTTCT ............................. TACACCACCAGCAGAACGTTGCCGACGACGCG 797558 29 100.0 32 CGACGACGCG ............................. ATCGAACCGCCGGAGCGCAGCGACCAACCGCG 797619 29 100.0 32 ACCAACCGCG ............................. CGGTTTTCCGGCAATGCGCCATAAAAACGCCG 797680 29 100.0 31 AAAAACGCCG ............................. ATAGCCTGCACGTGCAGGCTATAACGAAAAC 797740 29 96.6 32 TAACGAAAAC T............................ AAACGCCATAGCACACCCCCACCACTACAAGA 797801 29 100.0 32 CACTACAAGA ............................. GTTTGGAGCGCTATCAGCATATAGTGAAATGC 797862 29 100.0 32 AGTGAAATGC ............................. CAGGTCATGCATATACCGCTCATCCCTGCTGG 797923 29 100.0 32 TCCCTGCTGG ............................. CAGTGCTCCTTCTGCGTTACACATCTCACTGG 797984 29 100.0 32 ATCTCACTGG ............................. GCTGCGAGTTTGGCGCTGGAGGTGTTCGCTTA 798045 29 100.0 TGTTCGCTTA ............................. ACTTGCGTCT ========== ====== ====== ====== ========== ============================= 15 29 31 CGGTTCACCCCCACGGGCGTGGGGACAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-10.90,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [33.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [760,339] Score: 0.18/0.18 # # Final direction: F [0.96,0.27 Confidence: MEDIUM] >NC_009524 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 831244 28 100.0 32 NNNNNNNNNN C........................... TGGGAATGTCTGTTACTGGCGGCGAGGACAAA 831304 28 100.0 32 NNNNNNNNNN ............................ TATTAGTAAGTGACTTAACTATATCAATACAA 831364 28 100.0 32 NNNNNNNNNN ............................ CTGTTTGCATAGCTCGCTTTCTTGTTCAGCAT 831424 28 100.0 32 NNNNNNNNNN ............................ TATCATTAGCATAGGGTTGTAAGTCTGCTAAT 831484 28 100.0 1 NNNNNNNNNN ...................T.ATATCTA NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 5 28 32 TTTCTAAGTCACCTATGCGGTGATGAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:57.14%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.00,-6.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [444,134] Score: 0.18/0.18 # # Final direction: F [0.59,0.37 Confidence: LOW] >NC_009525 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3131153 36 100.0 38 NNNNNNNNNN .................................... TCGGGCACGGCCGAAACACCGCGCGAAGGGCGGTTCAA 3131227 36 100.0 40 NNNNNNNNNN .................T.................. TGGGAGGATGTCACTCGGACATAGCTGTCATCGGCGGTGT 3131303 36 100.0 40 NNNNNNNNNN ................................G... ATGGAGCAGTAGCGTGGCTGTGGTGTGGCGGGCGATATGC 3131379 36 100.0 37 NNNNNNNNNN .................................... TGCTGCACCTCCCGCACCCGGTGCGATTCTGCGTCCA 3131452 36 100.0 36 NNNNNNNNNN .............................C...... CCCGATAGTCGCGCTCGTCCATGTCCCACCATGAGG 3131524 36 100.0 35 NNNNNNNNNN .................................... TACCTGATAGAAGCCGGAAAGCTCCGTGCCGTCAG 3131595 36 100.0 38 NNNNNNNNNN .................................... AGGGCACTGGACCTGTATGAGGCACAGATGGCGTACTA 3131669 36 100.0 40 NNNNNNNNNN .................................... CCGGATCGGTTACCCACGCCGATTTACTGGCCATCGTCGG 3131745 36 100.0 35 NNNNNNNNNN .................................... ACTTGCGCGCACAACGCATCCGCCATCCACGGGGC 3131816 36 100.0 37 NNNNNNNNNN .................................... CTGAAAGGGGGACTGTGGACGAGTTCGCGCTCAAAAT 3131889 36 100.0 38 NNNNNNNNNN .................................... TTGAACACGCCGATACCTATTTGGTCGGGAGTGATAAA 3131963 36 100.0 37 NNNNNNNNNN .................................... CGGACTTGATCGACGCGAACCTGTCTGACGCGAACCT 3132036 36 100.0 37 NNNNNNNNNN .................................... GGCTGGAAAAGGGCGCGGGGCAACCGCATCGTCAAGA 3132109 36 100.0 36 NNNNNNNNNN .................................... GCGTTGTGGTCGTGTCGTGGAGCCTGTATTTCGCTG 3132181 36 100.0 36 NNNNNNNNNN .................................... CATTAGTTGGTGTTGTGATCGCTAAACGCCGGGGCA 3132253 36 100.0 38 NNNNNNNNNN .................................... CTATCCGCGGGAAGAGATCACGAATCCGGCGTCGAAGG 3132327 36 100.0 38 NNNNNNNNNN .................................... ATGCTGAGCTGAGGCGCCGGATGATGGTGGTGCTGAAG 3132401 36 100.0 35 NNNNNNNNNN .................................... TGACAGGGTGCGGTGGTCGCTGATCGGCTCCCCGA 3132472 36 100.0 1 NNNNNNNNNN .....................GAACC.C.CCGGTGA NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 19 36 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [3-13] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [38.3-38.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [150,28] Score: 0.18/0.18 # # Final direction: R [0.59,0.74 Confidence: LOW] >NC_009525 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3135239 36 100.0 34 CTGAGGTGTT .................................... TAGAAGGCGATCACTGGAAGCACGGCGCTTGCGA 3135309 36 100.0 36 GCGCTTGCGA .................................... TTGGTCAAAAGCTGTCGCCCAAGCATGAGGCAAAAA 3135381 36 100.0 41 GAGGCAAAAA .................................... ACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTATG 3135458 36 100.0 38 ACCCTCTATG .................................... GTGCAAGAATTCCGGGTTGCAGTGCAACACGGTTTTAA 3135532 36 100.0 ACGGTTTTAA .................................... TCTATGGACA ========== ====== ====== ====== ========== ==================================== 5 36 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1445,50] Score: 0.18/0.18 # # Final direction: R [0.18,1.01 Confidence: HIGH] >NC_009525 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================= ====== 3133833 33 100.0 43 NNNNNNNNNN G...GGG.GGT..A................... TCGCGGCGAGCACGTCTCACCCAGCAGGCGGTGAGGTTGGGTT 3133909 33 100.0 42 NNNNNNNNNN ................................. ACGGACGAGCTGGACCGCATCAGCGATGCTGAGCTGAGGGTT 3133984 33 100.0 40 NNNNNNNNNN ................................. TTGTCTCAATCGTGCCGTCTGCGGTGACACGCTCCAAGTT 3134057 33 100.0 39 NNNNNNNNNN ................................. CACCAGGATCAGCGCCAAGCCAGTTAGCGCAATCCAGTT 3134129 33 100.0 39 NNNNNNNNNN ................................. CTCCCGGACCATCTGCAGCTCGCCCGGGTCCATGCGGTT 3134201 33 100.0 40 NNNNNNNNNN ................................. CGGAGTCATCCGCGCGGGCCGGCGCGATTGTTGCCGGGTT 3134274 33 100.0 39 NNNNNNNNNN ................................. TGGCGATTTACGACGCTGACGGGAACTCGTGCGAATGTT 3134346 33 100.0 28 NNNNNNNNNN .............................TCCG CGAAATTCACTGCGCGTTATTCAAGGTT 3134407 33 100.0 44 NNNNNNNNNN ................................. CCGAGCCGACCATCCGCATCACACCGAAAGGGTTGGCGCAAGTT 3134484 33 100.0 39 NNNNNNNNNN ................................. ACGTGGGGAGAGGGAATGGCAATGATGGTCGACGAAGTT 3134556 33 100.0 43 NNNNNNNNNN ................................. CTCGGACAGCATCTCCCCGGGCGGGCAGCAGATATCCCATGTT 3134632 33 100.0 44 NNNNNNNNNN ................................. CGACCCGTGGCCGCCAGGTTGCCGCCGCCGTTGCTCACCTGGTT 3134709 33 100.0 40 NNNNNNNNNN ................................. CCGGAAGTCAACTAGAGCGGGTGTCGAACGCTGCCCGGTT 3134782 33 100.0 38 NNNNNNNNNN ................................. ATGCGAATCCGCTGTCAGCACATGGGATTCCGAGTGTT 3134853 33 100.0 40 NNNNNNNNNN ................................. CTAGGCGGCCCCGGCGAGGCTGGGGGCGGTTTCACGCGTT 3134926 33 100.0 41 NNNNNNNNNN ................................. CAGCGCAGACGGCAGCCCCGAGTACTCGCTCTCCTCAGGTT 3135000 33 100.0 40 NNNNNNNNNN ................................. AGGCTGAAATTGAAGCCGGAAATGACGACGCATTGGTGTT 3135073 33 100.0 58 NNNNNNNNNN .....................T..GG.CTT... GACCTAAAGCCCCGCCTAAATCCCCGCACAAAGTTGGGTCAGAAAAAAGGTTTTCCCG 3135164 33 100.0 42 NNNNNNNNNN .T.CC...TC.......GGG.TTTGGGTCT... GACCTGATGATTGGTCGGCGTATGACGTGCTACTGAGGTGTT 3135239 33 100.0 37 NNNNNNNNNN GTTTC.GT.C.CTCTC.GGG.TTTGGGTCT... GACTAGAAGGCGATCACTGGAAGCACGGCGCTTGCGA 3135309 33 100.0 39 NNNNNNNNNN GTTTC.GT.C.CTCTC.GGG.TTTGGGTCT... GACTTGGTCAAAAGCTGTCGCCCAAGCATGAGGCAAAAA 3135381 33 100.0 44 NNNNNNNNNN GTTTC.GT.C.CTCTC.GGG.TTTGGGTCT... GACACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTATG 3135458 33 100.0 41 NNNNNNNNNN GTTTC.GT.C.CTCTC.GGG.TTTGGGTCT... GACGTGCAAGAATTCCGGGTTGCAGTGCAACACGGTTTTAA 3135532 33 100.0 1 NNNNNNNNNN GTTTC.GT.C.CTCTC.GGG.TTTGGGTCT... NNNNNNNNNN ========== ====== ====== ====== ========== ================================= 24 33 40 TCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.50,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [12-23] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [39,53] Score: 0/0.18 # # Final direction: R [0.41,1.01 Confidence: MEDIUM] >NC_009565 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3131140 36 100.0 38 NNNNNNNNNN .................................... TCGGGCACGGCCGAAACACCGCGCGAAGGGCGGTTCAA 3131214 36 100.0 40 NNNNNNNNNN .................T.................. TGGGAGGATGTCACTCGGACATAGCTGTCATCGGCGGTGT 3131290 36 100.0 40 NNNNNNNNNN ................................G... ATGGAGCAGTAGCGTGGCTGTGGTGTGGCGGGCGATATGC 3131366 36 100.0 37 NNNNNNNNNN .................................... TGCTGCACCTCCCGCACCCGGTGCGATTCTGCGTCCA 3131439 36 100.0 36 NNNNNNNNNN .............................C...... CCCGATAGTCGCGCTCGTCCATGTCCCACCATGAGG 3131511 36 100.0 35 NNNNNNNNNN .................................... TACCTGATAGAAGCCGGAAAGCTCCGTGCCGTCAG 3131582 36 100.0 38 NNNNNNNNNN .................................... AGGGCACTGGACCTGTATGAGGCACAGATGGCGTACTA 3131656 36 100.0 40 NNNNNNNNNN .................................... CCGGATCGGTTACCCACGCCGATTTACTGGCCATCGTCGG 3131732 36 100.0 35 NNNNNNNNNN .................................... ACTTGCGCGCACAACGCATCCGCCATCCACGGGGC 3131803 36 100.0 37 NNNNNNNNNN .................................... CTGAAAGGGGGACTGTGGACGAGTTCGCGCTCAAAAT 3131876 36 100.0 38 NNNNNNNNNN .................................... TTGAACACGCCGATACCTATTTGGTCGGGAGTGATAAA 3131950 36 100.0 37 NNNNNNNNNN .................................... CGGACTTGATCGACGCGAACCTGTCTGACGCGAACCT 3132023 36 100.0 37 NNNNNNNNNN .................................... GGCTGGAAAAGGGCGCGGGGCAACCGCATCGTCAAGA 3132096 36 100.0 36 NNNNNNNNNN .................................... GCGTTGTGGTCGTGTCGTGGAGCCTGTATTTCGCTG 3132168 36 100.0 36 NNNNNNNNNN .................................... CATTAGTTGGTGTTGTGATCGCTAAACGCCGGGGCA 3132240 36 100.0 38 NNNNNNNNNN .................................... CTATCCGCGGGAAGAGATCACGAATCCGGCGTCGAAGG 3132314 36 100.0 38 NNNNNNNNNN .................................... ATGCTGAGCTGAGGCGCCGGATGATGGTGGTGCTGAAG 3132388 36 100.0 35 NNNNNNNNNN .................................... TGACAGGGTGCGGTGGTCGCTGATCGGCTCCCCGA 3132459 36 100.0 1 NNNNNNNNNN .....................GAACC.C.CCGGTGA NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 19 36 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [3-13] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [38.3-38.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [150,28] Score: 0.18/0.18 # # Final direction: R [0.59,0.74 Confidence: LOW] >NC_009565 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3133859 36 97.2 41 TCGTCGACGA ..........T......................... GTGATCTTCTCTCCTGGCGAGGTCAAGGAAATCGATGTGGA 3133936 36 100.0 36 TCGATGTGGA .................................... CACCAGGATCAGCGCCAAGCCAGTTAGCGCAATCCA 3134008 36 100.0 36 GCGCAATCCA .................................... CTCCCGGACCATCTGCAGCTCGCCCGGGTCCATGCG 3134080 36 100.0 37 GGTCCATGCG .................................... CGGAGTCATCCGCGCGGGCCGGCGCGATTGTTGCCGG 3134153 36 100.0 36 TTGTTGCCGG .................................... TGGCGATTTACGACGCTGACGGGAACTCGTGCGAAT 3134225 36 88.9 29 TCGTGCGAAT ................................---- TCCGCGAAATTCACTGCGCGTTATTCAAG 3134290 36 100.0 41 GTTATTCAAG .................................... CCGAGCCGACCATCCGCATCACACCGAAAGGGTTGGCGCAA 3134367 36 100.0 36 GTTGGCGCAA .................................... ACGTGGGGAGAGGGAATGGCAATGATGGTCGACGAA 3134439 36 100.0 40 GGTCGACGAA .................................... CTCGGACAGCATCTCCCCGGGCGGGCAGCAGATATCCCAT 3134515 36 100.0 37 GATATCCCAT .................................... CTAGGCGGCCCCGGCGAGGCTGGGGGCGGTTTCACGC 3134588 36 100.0 38 GGTTTCACGC .................................... CAGCGCAGACGGCAGCCCCGAGTACTCGCTCTCCTCAG 3134662 36 100.0 37 CTCTCCTCAG .................................... AGGCTGAAATTGAAGCCGGAAATGACGACGCATTGGT 3134735 36 100.0 35 ACGCATTGGT .................................... CTAAGCCCGCTAATCCCGCACAAGTGGTCAGAAAA 3134806 36 100.0 39 GGTCAGAAAA .................................... CTGATGATTGGTCGGCGTATGACGTGCTACTGAGGTGTT 3134881 36 100.0 34 CTGAGGTGTT .................................... TAGAAGGCGATCACTGGAAGCACGGCGCTTGCGA 3134951 36 100.0 36 GCGCTTGCGA .................................... TTGGTCAAAAGCTGTCGCCCAAGCATGAGGCAAAAA 3135023 36 100.0 41 GAGGCAAAAA .................................... ACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTATG 3135100 36 100.0 38 ACCCTCTATG .................................... GTGCAAGAATTCCGGGTTGCAGTGCAACACGGTTTTAA 3135174 36 100.0 ACGGTTTTAA .................................... TCTATGGACA ========== ====== ====== ====== ========== ==================================== 19 36 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [38.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [78,46] Score: 0/0.18 # # Final direction: R [0,1.42 Confidence: HIGH] >NC_009565 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 3961150 23 100.0 112 NNNNNNNNNN ...C.GA.......G.G..T..G ACTGGCGGTAACGCCGGCGCCGGCGGGGCCGGCGGGGCCGCCGGCACCGGAGGAACCGGCGGGGTTGTCGGCGCCGCGGGCAAGGCCGGTATCGGCGGCACCGGCGGCCAAG 3961285 23 100.0 124 NNNNNNNNNN .....G........G.G...A.. GCCGGCACGGATGCGACCGCTACCGGTGCCACCGGCGGCACCGGGTTTTCCGGTGGAGCCGGCGGGGCCGGCGGGGCCGGCGGCAACACCGGGGTTGGCGGCACCAACGGCTCCGGCGGGCAAG 3961432 23 100.0 109 NNNNNNNNNN ..............G.G...... GCCGGTGGTGCTGGCGGGGCCGGCGCCGACAACCCCACCGGCATCGGCGGCACCGGCGGTGACGGCGGCACCGGCGGAGCGGCCGGAGCCGGCGGGGCCGGCGGAGCGG 3961564 23 100.0 88 NNNNNNNNNN C.........A............ ATGATCGGCACCACAGGCAACGCCGGTGTCGGCGGGGCCGGCGGCCAAGGCGGTGACGGCGGAGCCGGCGGGGCCGGCGCCGACGCCG 3961675 23 100.0 76 NNNNNNNNNN A.CAGC......C.......... ACCGGGTTCGCCGGTGGAGCCGGCGGGGCCGGCGGGGCCGGCGGGGCCGGCGGTAGCAGCGGTGCCGGCGGCACCA 3961774 23 100.0 49 NNNNNNNNNN A....T........G........ ACCGGCGGACAAGGCGGCGCCGGGGGTGCTGGCATCAGCTTCAGCAACG 3961846 23 100.0 70 NNNNNNNNNN ..A...A................ ACCGGGGGCGTGGGCGGCACCGGGGGCGACGGCGGCAACGCAGGCACCGGCGCCGGCGACCCCGGCAAAG 3961939 23 100.0 49 NNNNNNNNNN ....................... ACCGGCGGCAGCGGCGGGGCCGGCGGTAGCGGCGGGGCCAACTTCAACG 3962011 23 100.0 49 NNNNNNNNNN ....................... ACCGGCGGCAAAGGCGGCCTAAACACCGACGGACTCAGCAGCGCCACCA 3962083 23 100.0 46 NNNNNNNNNN ....................... AAAGGCGGCACCGGCGGGGCCGGCGACGACTCCGCCGGCGGGACCG 3962152 23 100.0 67 NNNNNNNNNN .......A.....GG........ AACGCCGGCGCCGGCGGCCTAGCCAACACCGGCGGCACCGCAGGCAACGCGGGCATCGGCGGTGACG 3962242 23 100.0 55 NNNNNNNNNN .....CAA.....T.A....... CAAGGAGACAGCGGTTCCGGATTGGGCGGCCAGCCCGGCTTTGCCGGCGGCCCCG 3962320 23 100.0 91 NNNNNNNNNN ......AA.....GG........ AACGCCGGCACCGGCGGCACCAACGGCTCCGGCGCCGGCGGGGCCGGCGGACAAGGCGGCGCCGGGGGTGCTGGCATCAGCTTCAGCAACG 3962434 23 100.0 70 NNNNNNNNNN ..A...A................ ACCGGGGGCGTGGGCGGCACCGGGGGCGACGGCGGCAACGCAGGCACCGGCGCCGGCGACCCCGGCAAAG 3962527 23 100.0 58 NNNNNNNNNN ....................... ACCGGCGGCAGCGGCGGGGCCGGCGGTAGCGGCGGGGCCAACTTCAACGGCGGCACCG 3962608 23 100.0 85 NNNNNNNNNN ....................... ACCGGCGGCAAAGGCGGCATGGGCGGCATCGCTGGCGACGGCGGGCCCGGCGGTGACGGCGGCAACGCCGGGGTCGGAGGAAAAG 3962716 23 100.0 58 NNNNNNNNNN ........AA.....A....... AGCGGCGGGACCGGCGGCACAGGCGGGCCCGGCGGCAGCGGCGGCGCGCCCACCGGCA 3962797 23 100.0 85 NNNNNNNNNN ...............AA...... GCCGGCGGTGACGGCGGCGATGGCGCCGACGGAGGGGCAGCCACCGGCGTCGGCGACGGCGGCGACGGTGGTAACGGTGGTAACG 3962905 23 100.0 1 NNNNNNNNNN .T..T.A.........G....T. NNNNNNNNNN ========== ====== ====== ====== ========== ======================= 19 23 74 GCGGCACCGGCGGCACCGGCGGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [2,] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.90,-3.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [24-21] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [28.3-15.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1410,682] Score: 0.18/0.18 # # Final direction: F [0.82,0.78 Confidence: LOW] >NC_009613 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================================== ====== 1734045 46 100.0 30 CTCGCGGTAT .............................................. GCTAAATATTTCTTTTATTTTATTTTGCTT 1734121 46 100.0 30 TATTTTGCTT .............................................. TATTGAACAGCAATTTTCATCAGATGATGA 1734197 46 100.0 29 CAGATGATGA .............................................. TACGGCATTCAAACCCCCCATCTATTACT 1734272 46 100.0 30 ATCTATTACT .............................................. AAAGACTTATTTAAGTCTAAAGAAGTGCCT 1734348 46 97.8 29 AGAAGTGCCT .................G............................ GAATGCGTGCGCTGTATGTATTTCGTTTT 1734423 46 100.0 30 ATTTCGTTTT .............................................. AATGTGTCTATTGTGAATACATTACCTACT 1734499 46 100.0 30 ATTACCTACT .............................................. ACGGAATAAACGGAAACGAGCAACTTATTA 1734575 46 100.0 29 CAACTTATTA .............................................. ATTACAGTTGCTTTAAATAAAAAGTAAAA 1734650 46 100.0 30 AAAAGTAAAA .............................................. AAAACAATCATCTATGTTGCTAAATCTTTT 1734726 46 100.0 30 TAAATCTTTT .............................................. GAACACATAACAGGACACAAGGCATTGGCT 1734802 46 100.0 30 GGCATTGGCT .............................................. ACTTTGATATACGACATCTCGCTTACTGGA 1734878 46 100.0 30 GCTTACTGGA .............................................. TAAGTTTTCCTACTTAACCATTTTTTAAAA 1734954 46 100.0 29 TTTTTTAAAA .............................................. ATAGTACTTTGATTTCACGTGCGAAAACG 1735029 46 100.0 30 TGCGAAAACG .............................................. GGTGGCAATGTGTATTCAAACACGGATATA 1735105 46 100.0 30 CACGGATATA .............................................. GGAGCTGGTTCGGGTACAATTACATTAAAT 1735181 46 100.0 TACATTAAAT .............................................. ATTCTCTTTCA ========== ====== ====== ====== ========== ============================================== 16 46 29 GTTGGTAATTATAAGCTAAAATACAATTTTGAAAGCAATTCACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:73.91%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.50,-2.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [118,2582] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_009615 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1380418 32 100.0 34 TTTGCACAGT ................................ CAATGTCTTCGGGGTATATTCCTTGCCTTGATAG 1380484 32 100.0 33 GCCTTGATAG ................................ TTGCCATGATATTAGTTTTTAATGTTATTTATT 1380549 32 100.0 33 GTTATTTATT ................................ CTCCAGTACCTTTTTAAGCTGATATAGGCTCAA 1380614 32 100.0 33 ATAGGCTCAA ................................ ATGGCCTTGAGGTCGTTGTGCCCTGTCCATCTC 1380679 32 100.0 TGTCCATCTC ................................ ATTTGTAAAGC ========== ====== ====== ====== ========== ================================ 5 32 33 GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [5,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.00,-4.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [171,223] Score: 0/0.18 # # Final direction: F [4.5,0.74 Confidence: HIGH] >NC_009616 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 137986 30 100.0 36 GAAAACTATG .............................. TATATCTTATTGAGGCTAAGTGGACGTGCATTTTAT 138052 30 100.0 39 TGCATTTTAT .............................. ATGTTGGATTTCTTCTTTTATCAAGTGTGATAGAAATAA 138121 30 100.0 37 ATAGAAATAA .............................. TAACAAAAAATGTTGTATTGGATTGACGTCGTACTAA 138188 30 100.0 39 GTCGTACTAA .............................. AGACATTAACGCAAATACTGCTCTTGCCGCTCTTGCTTC 138257 30 100.0 36 CTCTTGCTTC .............................. TTAAGTAAGTTTTTGGATGGCAAGAGAAGTTTAAAT 138323 30 100.0 37 AAGTTTAAAT .............................. TGTGGATGAAAGAATTAGAATTCCCACACCATACACG 138390 30 100.0 37 ACCATACACG .............................. TGTACGATGACTCTGGTCGGATTCTACACTCGTTTGA 138457 30 100.0 36 ACTCGTTTGA .............................. AAATATTGGTGGTGTTCTTCCTCAAGAATTTTTGGA 138523 30 100.0 AATTTTTGGA .............................. ACATTATTGT ========== ====== ====== ====== ========== ============================== 9 30 37 GTTTCTACCTTACCTTGGAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.40,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [88.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [242,192] Score: 0/0.18 # # Final direction: F [5.14,0 Confidence: HIGH] >NC_009616 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1638704 30 100.0 42 AAGGTGACGG .............................. CTACAGTTACCGCCACACCCCCTTCTTTCAAAAATTTGTTTA 1638776 30 100.0 40 AATTTGTTTA .............................. TTAAATAATTTACTTAAATCAGCACGACGAATAACTTCAT 1638846 30 100.0 40 ATAACTTCAT .............................. TAAATTTATAACTCCAATTCCGTATTTTTCCTTTACCTCC 1638916 30 100.0 36 CTTTACCTCC .............................. TCCCTGGGGGCGATCACCCCCAAGGATGAGAAAAGA 1638982 30 100.0 41 TGAGAAAAGA .............................. TTCCAGGGAGCCTCCCATATATCGGGGTCCCTGTTTGTTTC 1639053 30 100.0 39 TGTTTGTTTC .............................. ATCATAACAAGGCCATCATAACCAGCTGCACCAATTTTC 1639122 30 100.0 38 ACCAATTTTC .............................. AAAAAAGAAGAGGAGCAAAACTAACGCTCCTCTTCTTC 1639190 30 100.0 43 CCTCTTCTTC .............................. CACCTCCCCCCAAAATTTTTGTTTCAACCTCCATGCTTTCCCC 1639263 30 100.0 44 TGCTTTCCCC .............................. CAAGGTTTTCCACAAGGGTGGTACGCGGCAACTCAAAAGTTACC 1639337 30 100.0 43 AAAAGTTACC .............................. TACTGGGCAACGTTAATGAATGTCCTGACGGAAGAATAAAATA 1639410 30 100.0 43 GAATAAAATA .............................. TTGTAAAAATATGCAACTATATCCTCTACCCTATATGTATTTT 1639483 30 100.0 42 TATGTATTTT .............................. CATTAGAATTGAGAACTCCTATATATTCAATATCATGCAAGT 1639555 30 100.0 38 TCATGCAAGT .............................. GAAAAATCACCAGTTCTATCATTTCTTGTTTATTCATA 1639623 30 100.0 37 TTTATTCATA .............................. CGATTGTGATTTCAGATATGATTCGCCATTGTCAAGT 1639690 30 100.0 40 ATTGTCAAGT .............................. TCTCTTGTTTTGTTAATTCTTCTTCGCATTCTTTGATGCG 1639760 30 100.0 CTTTGATGCG .............................. TTGTGGTAAT ========== ====== ====== ====== ========== ============================== 16 30 40 GTTTAGAATCTACCTATGAGGAATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.00,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [993,385] Score: 0.18/0.18 # # Final direction: F [0.55,0.27 Confidence: MEDIUM] >NC_009616 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 754563 30 100.0 40 NNNNNNNNNN T....C........................ TAACATTGCAATATTGCGACGATACTGGATATGAAATGTA 754633 30 100.0 38 NNNNNNNNNN .....C........................ ATCTCATATCCAAGCATATGGTTCAAGACAAGGCCTCA 754701 30 100.0 38 NNNNNNNNNN .............................. ACGCAATCGTGGATCAACTTGAAAAAGCCAAATATTAC 754769 30 100.0 40 NNNNNNNNNN .............................. GAAACAATAAACGTTGCCAACAAAACGTGGCAAAAAGTTA 754839 30 100.0 40 NNNNNNNNNN .............................. TCAATTATTTTTGATGAAGAATGGCCTGCGGGTATTTTTA 754909 30 100.0 38 NNNNNNNNNN .............................. TTGCCGCCACGGTGGCTGAGGCAACAGTGGCTGCCAAA 754977 30 100.0 39 NNNNNNNNNN .............................. AACGAATTGTTGGGGTTCCTGGTTTTGTAAGATAAATAA 755046 30 100.0 41 NNNNNNNNNN .............................. GAAATATGTATTTGGAATATTTATGATAGGGTGCAGGACAG 755117 30 100.0 37 NNNNNNNNNN .............................. GTAGTCCCCCCCTCTGAGGGAGAAATCATTTTCGTCG 755184 30 100.0 40 NNNNNNNNNN .............................. ATTAATAAATTGGATGAGGAAGACCTAATCAAACTTGTAC 755254 30 100.0 39 NNNNNNNNNN .............................. TATACTTACCGCTAAACGCAGATTTAGATCAAATAAAAG 755323 30 100.0 37 NNNNNNNNNN .............................. TTCTTAGTTTTGAAGATTTTGAAGGGAGTAAAGTTTA 755390 30 100.0 40 NNNNNNNNNN .............................. TTGGTGAATATGTAAATATATATTTCAGGAAGATTGATAG 755460 30 100.0 47 NNNNNNNNNN .............................. AAAATGTATTTTAAATTTTTATAAATTTTATCCATCACAGAATTCAA 755537 30 100.0 37 NNNNNNNNNN .............................. AAAAGTATTATGGAATAGGACTTTATGAAGATTTAAT 755604 30 100.0 41 NNNNNNNNNN .............................. GACGAATTTTGGACTAATGGCTGGGATGCTGAAAAAACTGC 755675 30 100.0 42 NNNNNNNNNN .............................. CTATTTGAACGCATTGTCAAGAGAGTACATCAACTAAAATCT 755747 30 100.0 38 NNNNNNNNNN .............................. TTTTTTAGCGCGCTTGGTGTATAACTTACCAATGTCGC 755815 30 100.0 41 NNNNNNNNNN .............................. ACAAAAAATTATCAGGTATGATTCAGGCAACCAAAAACAAA 755886 30 100.0 40 NNNNNNNNNN .............................. AAAGTCCTCTTCTTTTTTTACTTAACAATGGAATCGTTTC 755956 30 100.0 43 NNNNNNNNNN .............................. AAAACAATTACCAATTGAAATATGGAACGATGATGAAACAAAC 756029 30 100.0 39 NNNNNNNNNN .............................. AACGAATTGTTGGGGTTCCTGGTTTTGTAAGATAAATAA 756098 30 100.0 42 NNNNNNNNNN .............................. AGGATCATGTAGAAGAATTAAAACGTAGCATCGAAGAGGTTG 756170 30 100.0 43 NNNNNNNNNN .............................. GGTATTTTTGAGGTTCAAGAGTATCGTTTGAGCGACAATTTAA 756243 30 100.0 39 NNNNNNNNNN .............................. TTCAAGTGCAAAGACTGGGTGATTGTATTGAAATTTCTT 756312 30 100.0 39 NNNNNNNNNN .............................. GAACATTTTAGGCGCATTTGTTTCTAAGTATTTTAGAGG 756381 30 100.0 46 NNNNNNNNNN .............................. TTAAAAACCCCTAACATTGGCAATTTATCAGGTAATGGTGTAACTA 756457 30 100.0 43 NNNNNNNNNN .............................. TATATATTTTATAATTGTGTGGGTTCTGGATATGGACAAATAC 756530 30 100.0 40 NNNNNNNNNN .............................. GAAAGCATGGAGGTTGAAACAAAAATTTTTGGCGGGGGTG 756600 30 100.0 43 NNNNNNNNNN .............................. GAGAATTATCAGAAGAAGTAATGGTGGACTTGCATGATATTGA 756673 30 100.0 37 NNNNNNNNNN .............................. ATTGATCCAGAAACTGGCGATAAAATTGGCGAGACGT 756740 30 100.0 41 NNNNNNNNNN .............................. AACCTTGCAAAACGGGAAGGTCAATCTGACCTTCCAAATGG 756811 30 100.0 40 NNNNNNNNNN .............................. TGTATTTCAAGAGGATTGATATAGAATTGTTGAAATCCTT 756881 30 100.0 35 NNNNNNNNNN .............................. CGATGATAGCGGTCATGGCAGAGCAGTATTGACTT 756946 30 100.0 41 NNNNNNNNNN .............................. GAATTAAGAAAATTTGCAGGGTCACTCGGGGTGTGACCCTG 757017 30 100.0 36 NNNNNNNNNN .............................. ATATTAAACTGCTAGTCCTCGCAATAATAGGGGACC 757083 30 100.0 42 NNNNNNNNNN .............................. CATTAGACACAATTTTGAATGTCGCACTTGAAAAGCTTGCAG 757155 30 100.0 44 NNNNNNNNNN .............................. TGATATTTTTTAGTTTTGAGGATTTTGTTAGAAGTAAAGTTTAT 757229 30 100.0 40 NNNNNNNNNN .............................. TGTTTTATATTGTCAAAAAAGGGGCTATAATCGAACCCCC 757299 30 100.0 40 NNNNNNNNNN .............................. AACCAGGAAGCGGCGGGAAGGTGCCATGGCCTGTCGTGTA 757369 30 100.0 40 NNNNNNNNNN .............................. GGATTATATTGTAGAAAAATTAACAGTTGTTGACTTGTAT 757439 30 100.0 40 NNNNNNNNNN .............................. AGAAATAATTGATTTACATGAGGAGGTGGGGTATTATGTT 757509 30 100.0 40 NNNNNNNNNN .............................. TATTTTTTAATTATGAGGATTTTGTTAGAAGTAAAGTTTA 757579 30 100.0 40 NNNNNNNNNN .............................. GGGGATTTCGGTGACAGTTACGATTTGTTTTATATTGTCA 757649 30 100.0 40 NNNNNNNNNN .............................. AAACAAAACATGCAAGATATTTGGTATTTACTGAAACACA 757719 30 100.0 34 NNNNNNNNNN .............................. GTATTTTAAATTTTTATAAATTTTATGCTTCGCA 757783 30 100.0 43 NNNNNNNNNN .............................. CATATAATAGCATTTAGCAATGTATTTTTACGAATACTACAAC 757856 30 100.0 44 NNNNNNNNNN .............................. GAGTTTTATTCCCCTACCTCAAGCGGTGCTTGGGTAGGGGTAAA 757930 30 100.0 42 NNNNNNNNNN .............................. CTTATTTAAAACATTAAAAGAAGAAGCACAAGAATCTGAACA 758002 30 100.0 40 NNNNNNNNNN .............................. TTATTTTGGTTGATCACAGAAAGCCCTTTGCTGAAATTAT 758072 30 100.0 38 NNNNNNNNNN .............................. TTTTTATTGCGGCGACGTGCCCTTTCGAAGCAAGACTA 758140 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 52 30 40 ATTTCTATTCCTCATAGGTAGATTCTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [127,504] Score: 0.18/0.18 # # Final direction: R [0.27,0.96 Confidence: MEDIUM] >NC_009616 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1651125 30 100.0 39 AGAATAGCGT .............................. AAAATAATAGAAACAAAAATCGTGGGTGGGGGGTTGCGG 1651194 30 100.0 37 GGGGTTGCGG .............................. CCACGTCAGGGATGGTAGCAAGGGTGTCCACACACAG 1651261 30 100.0 39 CCACACACAG .............................. TAAATATTTATCAGAAAAAGGATTTTTAAAGGAAAATAG 1651330 30 100.0 42 AGGAAAATAG .............................. ACTTATGTTTTTTAGATGAATTATTAAAGGAGATGAAAGAAT 1651402 30 100.0 40 ATGAAAGAAT .............................. CGCATCAAAGAATGCGAAGAAGAATTAACAAAACAAGAGA 1651472 30 100.0 41 AAACAAGAGA .............................. CAAATTAATTAACCAGGCACAAAAGGAAGTGGCTATTACCA 1651543 30 100.0 41 GCTATTACCA .............................. TAGAGATTATTTTCGAAGAGGACTTTTAGTCCTCTTCTTTT 1651614 30 100.0 38 CTCTTCTTTT .............................. GAAGAAGAGGAGCGTTAGTTTTGCTCCTCTTCTTTTTT 1651682 30 100.0 39 CTTCTTTTTT .............................. GAAAATTGGTGCAGCTGGTTATGATGGCCTTGTTATGAT 1651751 30 100.0 41 TTGTTATGAT .............................. GAAACAAACAGGGACCCCGATATATGGGAGGCTCCCTGGAA 1651822 30 100.0 CTCCCTGGAA .............................. CCGTCACCTT ========== ====== ====== ====== ========== ============================== 11 30 39 GTTTCCATTCCTCATAGGTAGATTCTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [1064,595] Score: 0/0.18 # # Final direction: R [0,0.37 Confidence: MEDIUM] >NC_009616 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 360035 30 100.0 37 TTAAAACTTC .............................. AAAAAGCACTCAAAACGAGCGCCATATTTCGCCGTTA 360102 30 100.0 36 TTCGCCGTTA .............................. GCAGGAATGGCTAATTGAAACCTTACTGTTCCATCA 360168 30 100.0 35 TGTTCCATCA .............................. ACGAAAGCAATTCAGAAACTAACACAAATAGAGGC 360233 30 100.0 39 AAATAGAGGC .............................. CAAAATAACAATGATGGTTTGTTTAATTGTTTTGTTTCT 360302 30 100.0 38 TTTTGTTTCT .............................. CAATATTCTTCCCAGCAATCTTGACAAAGCGCAAATTC 360370 30 100.0 37 GCGCAAATTC .............................. TTTCAAGTCACTACTTGATGCGGATCCAATATATATT 360437 30 100.0 37 AATATATATT .............................. ATTCAGCTGAGAACAATAGATACACACACACCAAATA 360504 30 100.0 ACACCAAATA .............................. CATAGAATCC ========== ====== ====== ====== ========== ============================== 8 30 37 ATTTCAATTCCTCCAAGGTAAGGTAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.30,-3.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [359,175] Score: 0.18/0.18 # # Final direction: R [0.18,4.87 Confidence: HIGH] >NC_009633 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2274931 30 100.0 36 AAGTGAACGC .............................. GGTGTTACTGGACATAATAAATATTGCACCAGACTG 2274997 30 100.0 35 CACCAGACTG .............................. AATAATTGTGATGTGACTTAAATTATCCTTTGCTG 2275062 30 100.0 36 TCCTTTGCTG .............................. TTTGGAGTAATTTGCAATCTGCTATATAATCCCTCC 2275128 30 100.0 37 TAATCCCTCC .............................. TTGCATTGGCAAGCAATTCTAAAGCTTCGGTATTATC 2275195 30 100.0 37 CGGTATTATC .............................. TTTTAAAACCATTAGAAAAGTCTTGTGGTGATGCAGT 2275262 30 100.0 37 GTGATGCAGT .............................. TATTTTGCATACATTGCTATAACCCTCAAATCATCTT 2275329 30 100.0 36 AAATCATCTT .............................. GTGTTAGAACATTGTAGTAAAAACAGTATCGCCAAC 2275395 30 100.0 37 TATCGCCAAC .............................. AAAGTATTCCGCTATACTGGTTTTGTTCTTCTCAAAA 2275462 30 100.0 37 CTTCTCAAAA .............................. AGATTTAACAGTGTTGATACTAACATCATATTTTACA 2275529 30 100.0 36 ATATTTTACA .............................. ATGACTAGGAAAGTAATCACTACGATTGGCATTATT 2275595 30 100.0 35 TGGCATTATT .............................. ATGATTAATAGGTCCATCTTCATTTTTATAAAACA 2275660 30 100.0 37 TTATAAAACA .............................. AGAGAATATAAGATAGACTTATTCAACGCATTAGATT 2275727 30 100.0 36 GCATTAGATT .............................. CCATTTAGTGGGAATAATATGTTGGGCGGTGAAGAA 2275793 30 100.0 36 CGGTGAAGAA .............................. AATTGCCCTTGCAAGTCAAAGGTGGAATTTTTTCCC 2275859 30 100.0 36 ATTTTTTCCC .............................. TGAGGACAGGTGCATTGAAATTCAAAGGGTTAATGG 2275925 30 100.0 35 GGGTTAATGG .............................. CAGCAACCACCAATTCAAATCTATATTCAAATAGT 2275990 30 100.0 36 TTCAAATAGT .............................. CGCTTTAAGCAACTAACTAAGGATGTAGAACAAAAT 2276056 30 100.0 37 AGAACAAAAT .............................. ATAGATAGTGAATTGCAAACTATTGAATTGATATTTA 2276123 30 100.0 36 TTGATATTTA .............................. AGATATGCCTGTCATTTCAGATAGTTTGGTCATACT 2276189 30 100.0 35 TGGTCATACT .............................. AAAGCTAAAGGATCACGTTCATATATATCTTGAGA 2276254 30 100.0 34 TATCTTGAGA .............................. CGAAATAGGCAGAATGATGGAAATGTTGTTAGAT 2276318 30 100.0 35 GTTGTTAGAT .............................. ATTACTAGCAAAGTAAATAAGACTAAATTACCTAC 2276383 30 100.0 36 AATTACCTAC .............................. TTGGAAGGACTTGGTTCATAATGATAATGGCATTTA 2276449 30 100.0 35 ATGGCATTTA .............................. TCTAATGCATTATGCAAACCCTGAATCCAACCAAA 2276514 30 100.0 37 TCCAACCAAA .............................. TCCTAAGCATGGTCGAAAATTATCCCGTACTTGTACT 2276581 30 100.0 35 TACTTGTACT .............................. TTTAATACTCATGTAATTTACGTTACTTTAGATAA 2276646 30 100.0 37 CTTTAGATAA .............................. GTTTGAGGATCTTGCCAGTTTGTTTTTGCCATTTAAA 2276713 30 100.0 35 GCCATTTAAA .............................. AAACAATAAGGAGTGGTTTAAATTATATTATTATT 2276778 30 100.0 36 TATTATTATT .............................. AAAGAAAACCACGGAGTTAGGTAGGACTCCGTTTGC 2276844 30 100.0 37 CTCCGTTTGC .............................. TTCTAATAAAAAACTGGATCATGAGATCGTGAAGATC 2276911 30 100.0 37 CGTGAAGATC .............................. AAGGTTGCGAAACTAATTGCAGCTTACTTGAAATTAG 2276978 30 100.0 36 TTGAAATTAG .............................. AGGTCAAAGGGGCACTAGGGCAAATGTAGATCAAGG 2277044 30 100.0 37 TAGATCAAGG .............................. AGGGTATGCCTAAAAAGGGCTATATGCGCGAGTCAGT 2277111 30 100.0 37 GCGAGTCAGT .............................. GGATTTGAGGATGAAGAGTTTGCACTGGGAGACACCA 2277178 30 100.0 37 GGAGACACCA .............................. ACTATACCCGATTCCCAGTGCCAGTGTTGAAGCAAAG 2277245 30 100.0 36 TGAAGCAAAG .............................. GAGGGAAGAGACTACCACTATCCACCGTAAAAGCAA 2277311 30 100.0 35 GTAAAAGCAA .............................. ATTAGAGTGTCCTTAGACAATGCAATCATCCGAGA 2277376 30 100.0 35 TCATCCGAGA .............................. CAACATCTCCTGCTCCATTCCTGATGATCTCAAGG 2277441 30 100.0 37 GATCTCAAGG .............................. GTTGACATAACAAAGGATAGTATGCCGTTTACACCTC 2277508 30 100.0 37 TTTACACCTC .............................. CCGCTAAAGGTACCTGTGCCAAATGGGATGTTCCCAA 2277575 30 100.0 35 ATGTTCCCAA .............................. TTGAAACGAAAGGCTACGAATACCCTTACAGAACC 2277640 30 96.7 35 TTACAGAACC .........................C.... ATCGCACACCTTGTTTTTAACTACTTTCAATCCAC 2277705 30 100.0 37 TTCAATCCAC .............................. AACTATAATACAGGTCGCATTACTTTTAAATCACTAA 2277772 30 100.0 37 AAATCACTAA .............................. TGGCTTTAGTGGTGGGTGCGATTGCAGGGGTTATAGC 2277839 30 100.0 36 GGGTTATAGC .............................. ATGTGGGAAGGAACACGCACTAAAGCGCAATATGAA 2277905 30 100.0 35 GCAATATGAA .............................. AGTAGTCCTTAGCTTTATGATAGAGATATTTAATT 2277970 30 100.0 35 ATATTTAATT .............................. TTTGTTACGCCCCTTTGGTACTTGTTGTTATTTAA 2278035 30 100.0 37 TGTTATTTAA .............................. ATCAAACTGTAACGTGGCTTAAAAGCATGGGAACAAA 2278102 30 100.0 37 TGGGAACAAA .............................. ATCCTCCTGGGCTTTGCCACTATTTAACACAGCATTC 2278169 30 100.0 36 CACAGCATTC .............................. TAATTAACCCTCCTTCGTATAATATTTGAAATGCGC 2278235 30 100.0 36 TGAAATGCGC .............................. TTCCTTATAGGTTCCTTTAAAACATACCAAGCATGG 2278301 30 100.0 36 CCAAGCATGG .............................. TTGTTTGAGGAATCCAATTCAATCCATCATCTGTGC 2278367 30 100.0 38 TCATCTGTGC .............................. GAACCAGAGCCACAAATTATATTAGGTACTGTAAAAGG 2278435 30 100.0 37 CTGTAAAAGG .............................. GTAGAATTAGGCGGTAAAATGAGAAACATCAGATACA 2278502 30 100.0 37 ATCAGATACA .............................. TGCGTTAAGTTAAGTGAAACAATGCAAAGAAACCTTG 2278569 30 100.0 36 AGAAACCTTG .............................. CCAGCAGGCAAATCAGAATAAGCCTGACTTATTTCT 2278635 30 100.0 37 ACTTATTTCT .............................. TTATCAAGGACCTCTTGTTTGATTTCTACATATCCCC 2278702 30 100.0 37 ACATATCCCC .............................. AAAATAAATGAAGAGCTGCCTTACGGGGTTTGTAAAT 2278769 30 100.0 36 GTTTGTAAAT .............................. TGAGCAGGCAATAATCGTGTTATCTCAAAACACTTA 2278835 30 100.0 35 AAAACACTTA .............................. TAAATTTATGCAGACATGGAATGCTGTGGCCGGAT 2278900 30 96.7 36 GTGGCCGGAT .............................G TACAAAGATAGAGACAATCAACTCATGTGTCATAAC 2278966 30 93.3 GTGTCATAAC ..A..........................G TTGTATATT ========== ====== ====== ====== ========== ============================== 62 30 36 CCTTTAATTGAACTAGAGTAGAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:73.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [58.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [186,947] Score: 0.18/0.18 # # Final direction: R [0.41,0.45 Confidence: LOW] >NC_009634 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 127424 37 100.0 37 TTTGCTAAGG ..................................... CATTTGTAGCATAACAGACGTATTGATTACCTCTATC 127498 37 100.0 36 TACCTCTATC ..................................... TCTTTGAATATACCATCTGATGAGTCAGCTAAGATT 127571 37 100.0 36 AGCTAAGATT ..................................... AACGGATATCGATTATATAAGACGATTATATATTGA 127644 37 97.3 TATATATTGA ...................................G. CTTTCAAC ========== ====== ====== ====== ========== ===================================== 4 37 36 ATACGAAACGTTGATCCATCAAAACAAGGATTGAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.16%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.20,-2.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [421,184] Score: 0.18/0.18 # # Final direction: F [0.96,0 Confidence: HIGH] >NC_009634 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 262748 37 100.0 36 NNNNNNNNNN .AG.TT...TC.......................... CCATTAAGGAAGTTGCACAGGCTGTCGACTCAATAG 262821 37 100.0 36 NNNNNNNNNN ..................................... CCAATGAAGCAAGTACTAATGAGTCGTATTATACAA 262894 37 100.0 37 NNNNNNNNNN ..................................... CTATCTAATATCCTATTATGTAATGGCTCGCACTCGT 262968 37 100.0 35 NNNNNNNNNN ..................................... CAGAATCGTAAGTACCTAAATTTATAGTTCCATCA 263040 37 100.0 35 NNNNNNNNNN ..................................... TGTTACGCCGTTTGCGGTTCCAAAATCAGATATTT 263112 37 100.0 36 NNNNNNNNNN ..................................... TTCTATAGGTGTTCGTTGAAAGTTCCGTAATGTCTG 263185 37 100.0 35 NNNNNNNNNN ..................................... TGTCTTTTTTTCCTTGTTTCAACTGAAAGAGATAC 263257 37 100.0 36 NNNNNNNNNN ..................................... TACAATTCAGAGAACTGGTGCTTCGGGTAAGATACC 263330 37 100.0 40 NNNNNNNNNN ..................................... CTGGCCAGGCTTATGCTATGCATATGGAGAATATCCGAAT 263407 37 100.0 35 NNNNNNNNNN ..................................... TCCGACGATACCGGAAAAATCCAATGTATCGGCTT 263479 37 100.0 37 NNNNNNNNNN ..................................... CTGGAAAACACCTACTGTTAATCCTGCAAGTATGAAT 263553 37 100.0 35 NNNNNNNNNN ..................................... TTCATTGTCAACTACTTCTGCGATTCCCAAATCAG 263625 37 100.0 36 NNNNNNNNNN ..................................... TTTATTCTACCCCAACTATTACTATAACTAGCAGAG 263698 37 100.0 38 NNNNNNNNNN ..................................... TACGTGATGTAGTACGTGTCTGCTGCAGCGATGAATAA 263773 37 100.0 33 NNNNNNNNNN ..................................... TTGTTGATGCAATTCCTGCCATTGACGTTCCGT 263843 37 100.0 37 NNNNNNNNNN ..................................... CTGCTCCAAGCATGATTACTGCTACTGCGATGATTGG 263917 37 100.0 35 NNNNNNNNNN ..................................... GTTTCTATGTGTTGGGTTGTGCCATTGTTGTAATG 263989 37 100.0 39 NNNNNNNNNN ..................................... ACCGATAATGTTTTGTACTCCTTCAACATTTTCTCTATA 264065 37 100.0 37 NNNNNNNNNN ..................................... TCCAGAATTGATAAACGGTATACATTAAAAACCATTA 264139 37 100.0 39 NNNNNNNNNN ..................................... TCAATTCTTTGTCAAGATGAAATTAAAAGATTATTATAC 264215 37 100.0 36 NNNNNNNNNN ..................................... TATAGTTCTATTTTTAACACACTTTAAAAAGTGTGA 264288 37 100.0 33 NNNNNNNNNN ..................................... TTGGAACCGGATTTTATAAATTATATGATATTA 264358 37 100.0 39 NNNNNNNNNN ..................................... AGTTTCATCCATCTCTTTTTGGTATATTTTCATAATTAT 264434 37 100.0 38 NNNNNNNNNN ..................................... GTTCGATATGAGGGGAACCAATCTCAAGTGTGGGATGT 264509 37 100.0 36 NNNNNNNNNN ..................................... TCTTAAAAGATAAAGGATATGATAAAAGGGATGATA 264582 37 100.0 35 NNNNNNNNNN ..................................... AATCAGTAAATCAGTATCGAATATTAAGGGTTTTG 264654 37 100.0 35 NNNNNNNNNN ..................................... TTTGTAGTTGCTATACTATCCCTCTGTTTTATTTC 264726 37 100.0 36 NNNNNNNNNN ..................................... TCTGTCAATGTTTCTACTTCCGCTTTAAAATCAATA 264799 37 100.0 37 NNNNNNNNNN ..................................... CATAAATTAATTTCTTCATTGGTTAGAATGCCCTCGT 264873 37 100.0 36 NNNNNNNNNN ..................................... CAGTGAAAATCCATATGAATTGGCACAGTACTTCAT 264946 37 100.0 36 NNNNNNNNNN ..................................... TACTCCTTCAACATTCTCTCGATATAAGTCATCTTT 265019 37 100.0 39 NNNNNNNNNN ..................................... GATACAGTCTTCACACATTGCACCACTTTCAAGTGTTGT 265095 37 100.0 37 NNNNNNNNNN ..................................... ACCACTCCAAAAAAGATAATGATTATTTGATAATTAT 265169 37 100.0 37 NNNNNNNNNN ..................................... AAATATCACATAGGAATAATTTTACCTCCGTAGCGAT 265243 37 100.0 38 NNNNNNNNNN ..................................... AGACGAAAGATCAGTTATTCAACTGATTTTCCACGCAG 265318 37 100.0 34 NNNNNNNNNN ..................................... CCTTCATGTTTTTCCATTTCTTTTATTGTGAAGT 265389 37 100.0 35 NNNNNNNNNN ..................................... TGAATCAACGTATCCTGTATCAATTTTGAGTTTAA 265461 37 100.0 36 NNNNNNNNNN ..................................... AGTTAATTGCTGTAATTTAAACGAGTTTTTCCTTGT 265534 37 100.0 37 NNNNNNNNNN ..................................... AAGAATAATGCAATGGCAAACATCACAGATGAGAAAT 265608 37 100.0 36 NNNNNNNNNN ..................................... ATCGAATAGTAGTTTTTTTCCGAAGTACTCACTTGG 265681 37 100.0 38 NNNNNNNNNN ..................................... AGTTCAAAAAGCAATGGCAAGAAAGAATTACAAAGCGT 265756 37 100.0 37 NNNNNNNNNN ..................................... TCAGACAAACTATGCCTTAACTGTCTTTTTCAGACAT 265830 37 100.0 36 NNNNNNNNNN ..................................... CTGAACTTCTAGTTCTTGAAAATCTACATATTCGGA 265903 37 100.0 35 NNNNNNNNNN ..................................... TTATCGGTTCAAAGTGTAACTGTTGAAGCAGGATA 265975 37 100.0 39 NNNNNNNNNN ..................................... ATGCCCCTTCAGTAATCTCGAATGCAAATCTTTCGACAC 266051 37 100.0 37 NNNNNNNNNN ..................................... ATTTGGCCGTACTCAGTATATATAATATCTGAGTCGT 266125 37 100.0 38 NNNNNNNNNN ..................................... CTATTTATGCAAAATAAAGATAAAAAGTTTAAAGCCAT 266200 37 100.0 36 NNNNNNNNNN ..................................... TTTTCATGTTGATCCCTCAATTAAAGTTTTCTTTAT 266273 37 100.0 35 NNNNNNNNNN ..................................... CTTAAAAGATAAAGGATATGATAAAAGGGACTACA 266345 37 100.0 40 NNNNNNNNNN ..................................... TACTATTTAGTATCCCTTAAAAAACTAGTATCATATGACT 266422 37 100.0 35 NNNNNNNNNN ..................................... AAATATTACAGAAGCTCAGCACATAGAATCCATAT 266494 37 100.0 37 NNNNNNNNNN ..................................... TACCAAGATATTATTTGCACAGTAGGTAACCGGAAAA 266568 37 100.0 37 NNNNNNNNNN ..................................... TCTATATCTTTTGCTAAAATATTAATTTGATATGCTC 266642 37 100.0 38 NNNNNNNNNN ..................................... AACAAACCTAGAGGGTGCAGACCTTAGGGGGGCTGACT 266717 37 100.0 35 NNNNNNNNNN ..................................... TATTTTACAATTTATAATATGTGAATATTACTATA 266789 37 100.0 37 NNNNNNNNNN ..................................... TTTTTCACAATTTAGCAATATTTATTAAAGTTTTCTT 266863 37 100.0 38 NNNNNNNNNN ..................................... AGAAGAGGAGCTAGAGATGGTGACTCAACCGTTATTCT 266938 37 100.0 36 NNNNNNNNNN ..................................... TTTACTTATTATTGATTGAAAGGGGGCGATAATGAC 267011 37 100.0 35 NNNNNNNNNN ..................................... CCTATTTTAATTGTAGTTAAAAAATCAATTAAAAT 267083 37 100.0 36 NNNNNNNNNN ..................................... AGATGTGGAAATGGTAGAAATTATTGAAGAAGAAGC 267156 37 100.0 36 NNNNNNNNNN ..................................... CCAACTCGGCTGTTGCTTACTATGGGAAAAAAGTTA 267229 37 100.0 36 NNNNNNNNNN ..................................... ACGATAACGAGACTGTTGAAGTAGACCCAACTCTTG 267302 37 100.0 36 NNNNNNNNNN ..................................... CTTTGTTCGATTGTTACAGGTCCATAGTTTTTTTTA 267375 37 100.0 35 NNNNNNNNNN ..................................... AATTATTCACACGACATAATAGACCAATAATTTGT 267447 37 100.0 38 NNNNNNNNNN ..................................... CTCAGATTTTTCAAATTTTTTCGAGGTATGGTATTATA 267522 37 100.0 35 NNNNNNNNNN ..................................... AATCGATTATTCAGAACTAATACGTTCTCTATATA 267594 37 100.0 36 NNNNNNNNNN ..................................... TCGTTGTTTGTGAGTTCTTGCATAATATAACACCTT 267667 37 100.0 39 NNNNNNNNNN ..................................... TTTTGAATATGGTAAAAACATGTCTTAATTATGATGATA 267743 37 100.0 34 NNNNNNNNNN ..................................... AAGATCACCGGGTCGGGACCCAGATTTATCTTAA 267814 37 100.0 36 NNNNNNNNNN ..................................... ATTTAACAAAAATAGTGAGAACATGAACGATATTGA 267887 37 100.0 36 NNNNNNNNNN ..................................... TGATTCTAATTCACCATTATGTAAGCTACCGGATTC 267960 37 100.0 38 NNNNNNNNNN ..................................... TCCAATTCCTGAAGGTCATGATCTGGATCAGGACTTGA 268035 37 100.0 37 NNNNNNNNNN ..................................... TAGATCACTATGCTGGAAAAAAAGCAACTGAAATAAT 268109 37 100.0 40 NNNNNNNNNN ..................................... TTGAAAAAATACTTACTGAATTGTCGATTAATGGTGAAAT 268186 37 100.0 37 NNNNNNNNNN ..................................... ACTGTAAGGAATTCTGATAAATTTATTCATTCCAGCA 268260 37 100.0 36 NNNNNNNNNN ..................................... ATCACTAATCTCGTCGACAACCACACATTTTAAGTT 268333 37 100.0 41 NNNNNNNNNN ..................................... ATTGACTCTTTTAATTTGATTTCAGGTGCTAAGTCAATACG 268411 37 100.0 36 NNNNNNNNNN ..................................... TTCTATTATTGTTTTTTCGTCGTTAGGATTTCGTCT 268484 37 100.0 32 NNNNNNNNNN ..................................... CCAAAATGTTTTTTTACGATATCTCTAATTGA 268553 37 100.0 36 NNNNNNNNNN ..................................... CGCTTTTAATTTATATGGTGAAAACAATTTTAAATT 268626 37 100.0 34 NNNNNNNNNN ..................................... ATTATTTTATAATAATATATTATCTATTATACTA 268697 37 100.0 37 NNNNNNNNNN ..................................... AAAAACAATTCGATAAAATACATTATGAAATAATAAG 268771 37 100.0 36 NNNNNNNNNN ..................................... TACTAAAAGATAAAGGATATGATAAAAGGGATTACA 268844 37 100.0 37 NNNNNNNNNN ..................................... ATCACTTTTTTATTATTTCTATTTTCGATAGAATATT 268918 37 100.0 35 NNNNNNNNNN ..................................... TACTACAAAGGATAGAAGACTATTATATAATTGAA 268990 37 100.0 35 NNNNNNNNNN ..................................... AGTGAGAATACATAAAAACAATCAAAAAGAAGGGA 269062 37 100.0 35 NNNNNNNNNN ..................................... TTCATTGTCAACTACTTCTGCGATTCCCAAATCAG 269134 37 100.0 36 NNNNNNNNNN ..................................... TTTATTCTACCCCAACTATTACTATAACTAGCAGAG 269207 37 100.0 35 NNNNNNNNNN ..................................... AGTGAGAATACATAAAAACAATCAAAAAGAAGGGA 269279 37 100.0 33 NNNNNNNNNN ..................................... TTGTTGATGCAATTCCTGCCATTGACGTTCCGT 269349 37 100.0 37 NNNNNNNNNN ..................................... CTGCTCCAAGCATGATTACTGCTACTGCGATGATTGG 269423 37 100.0 35 NNNNNNNNNN ..................................... GTTGTATGTGATGCCTTCCCCTCCCGACTGAACGT 269495 37 100.0 36 NNNNNNNNNN ..................................... CGATATATAATATTATATTATAATATCGGGTCAAAA 269568 37 100.0 36 NNNNNNNNNN ..................................... TATCCTGTCTTTGTATTTCATTTGTTGAATTAATAC 269641 37 100.0 35 NNNNNNNNNN ..................................... TTTCAATTTTTGCATTTTCTTCAAGATAGTTAATG 269713 37 100.0 34 NNNNNNNNNN ..................................... ATTACTTACTATATATAGTTATCTACACTAAGTA 269784 37 100.0 35 NNNNNNNNNN ..................................... GGCCGAAAAATTTAACTTTTAATAACTGCATATCT 269856 37 100.0 36 NNNNNNNNNN ..................................... GAAACGATTGGAGTTAATATGTAAGATTTTGAGTAT 269929 37 100.0 40 NNNNNNNNNN ..................................... ACAGGTAATCAAAAGTAATTTGGGGGCAACTGCGTTATAC 270006 37 100.0 36 NNNNNNNNNN ..................................... GACTATTTTTTTATAAAAGCATAACTATATATATGA 270079 37 100.0 1 NNNNNNNNNN ..................................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 101 37 36 GTTTCAATGCTTGTTCTAATGCATTATGCTCTTTTAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.20,-2.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [65.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2769,354] Score: 0.18/0.18 # # Final direction: R [0.55,5.18 Confidence: HIGH] >NC_009635 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1121706 37 97.3 32 GAAGTATAGG ........A............................ TCGTGTTCACTTATGGCTATAATCTGTTTTGG 1121775 37 100.0 32 TCTGTTTTGG ..................................... TTTCCATTGTGGTAGCTTCATAATTACAGTTC 1121844 37 100.0 36 ATTACAGTTC ..................................... TAATTATTTCGCATGATGTTGCAGAGCATTGAATAT 1121917 37 100.0 34 CATTGAATAT ..................................... GACATAATATCTCACCAATTTGGTAGTTGTGGCA 1121988 37 100.0 32 AGTTGTGGCA ..................................... TTGGAGTTAGCCCTTGCAGGAGTTGGAAAGGT 1122057 37 100.0 37 TTGGAAAGGT ..................................... TTTCCCTTATATCTCATTAATAATTTTACGGCGTAGC 1122131 37 100.0 36 ACGGCGTAGC ..................................... TGCATATATAAATTCAAATATGTCGATATTACAAAA 1122204 37 100.0 37 TATTACAAAA ..................................... GGACAGTAAAAACATTATCAGACTATACGGAGGTAAA 1122278 37 100.0 37 CGGAGGTAAA ..................................... TTGTTGTTATGTCGGTGTCTGTTAAATCAAATTTCAA 1122352 37 100.0 34 CAAATTTCAA ..................................... TTTTGGAGCCATTCATAATTTTGATTAATTCCAT 1122423 37 100.0 36 TTAATTCCAT ..................................... TGCATATATAAATTCAAATATGTCGATATTACAAAA 1122496 37 100.0 37 TATTACAAAA ..................................... GGACAGTAAAAACATTATCAGACTATACGGAGGTAAA 1122570 37 100.0 37 CGGAGGTAAA ..................................... TTGTTGTTATGTCGGTGTCTGTTAAATCAAATTTCAA 1122644 37 100.0 34 CAAATTTCAA ..................................... TTTTGGAGCCATTCATAATTTTGATTAATTCCAT 1122715 37 100.0 34 TTAATTCCAT ..................................... GATCTGATGGAATCATTGAAATTATTGCAAATCC 1122786 37 100.0 33 TTGCAAATCC ..................................... ATATTTTTGATATTGTTTTCATATTTTGCCTCT 1122856 37 100.0 33 TTTTGCCTCT ..................................... ATATTTTTGATATTGTTTTCATATTTTGCCTCT 1122926 37 100.0 33 TTTTGCCTCT ..................................... TTGTGGCGTTATTATCTCTATTGTGCAGGTCAT 1122996 37 100.0 TGCAGGTCAT ..................................... TGTATATGTA ========== ====== ====== ====== ========== ===================================== 19 37 34 GTCTAAAAGACACATCCATTAAAACAAGGATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-5.30,-5.30] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [483,233] Score: 0.18/0.18 # # Final direction: R [0.18,0.41 Confidence: MEDIUM] >NC_009637 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================== ====== 1766461 22 100.0 44 NNNNNNNNNN ...................... GTGCTATTATCCGCATACTTTTGGTATATTCCGCTTTCCGTTGC 1766527 22 100.0 44 NNNNNNNNNN ...................... GTGTTGTTATTTGAAAATTTAACAGAGACCCCGTAATTCCCGGC 1766593 22 100.0 65 NNNNNNNNNN ...................... AGATTATCTTTTGAATCAGGGTCATCCATTGGTTCCACATAAACATAAACTCCAGTATTGCCAGC 1766680 22 100.0 47 NNNNNNNNNN ..CA....C............. ATGTTGGCATCGGAAGCATAAATTTCAATTCCGCTTGATTGATTTGA 1766749 22 100.0 47 NNNNNNNNNN .G.T..A............... GTGTTATTATTAGAATAAATAATATCAATTCCGTTTAATTGATTTGA 1766818 22 100.0 47 NNNNNNNNNN .G.T..A............... GTGTTATTGGCCGAATTTCTCCAAAAATAAAGTCCACGTTTACCGAC 1766887 22 100.0 1 NNNNNNNNNN .G.T..AT.....T.AA....A NNNNNNNNNN ========== ====== ====== ====== ========== ====================== 7 22 49 ATTGATGGTATTTCCTGAAATT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.73%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [469,1018] Score: 0.18/0.18 # # Final direction: F [0.41,0.18 Confidence: MEDIUM] >NC_009641 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 1178380 19 100.0 37 NNNNNNNNNN ................... GAATTTCAAAAAGAAATTCTACAGACAATGCAAGTTG 1178436 19 100.0 37 NNNNNNNNNN ..GT...........C... AGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTT 1178492 19 100.0 37 NNNNNNNNNN ..................T GAAATTGGATTCCCAATTTCTACAGACAATGCAAGTT 1178548 19 100.0 1 NNNNNNNNNN ................... NNNNNNNNNN ========== ====== ====== ====== ========== =================== 4 19 37 GGCGGGGCCCCAACATAGA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,1] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [157,216] Score: 0/0.18 # # Final direction: F [0.64,0.41 Confidence: LOW] >NC_009641 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 917196 30 100.0 26 NNNNNNNNNN .............................. CGGGGCCCCAACACAGAGGCTGGCGG 917252 30 100.0 28 NNNNNNNNNN .............................. GGTGGAGCCCCGACACAGAGAAATTAGC 917310 30 100.0 26 NNNNNNNNNN TCCTCA.TT.CTAC.G.CAA.......... CGGGGCCCCAACACAGAAGCTGGCGA 917366 30 100.0 53 NNNNNNNNNN .............................. GGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAA 917449 30 100.0 1 NNNNNNNNNN ....A....AGTAGGATAAT.T...T.... NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 5 30 33 AAAGTCAGCTTACAATAGTGTGCAAGTTGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.50,-1.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [152,71] Score: 0.18/0.18 # # Final direction: F [0.96,0.27 Confidence: MEDIUM] >NC_009648 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1130143 28 100.0 107 NNNNNNNNNN .A.........A.C..CC...G.G..AG CGAAAGTGATGCCGATGCCGATTCTGATACAGACTCGGACAGCGACTCGGATTCTGACAGCGACTCGGACTCCGACAGCGACTCGGACTCTGACTCCGACTCCGATT 1130278 28 100.0 86 NNNNNNNNNN ..........C..C..C........... CTCTGACTCTGACAGCGACTCGGACTCTGACTCCGACTCCGATTCCGACAGCGACTCCGACTCCGACTCTGACAGTGACTCCGATT 1130392 28 100.0 86 NNNNNNNNNN .G.......................... TTCGGACTCGGACAGCGATTCCGACTCTGACAGCGACTCGGATTCGGACAGCGACTCCGACTCCGACAGCGACTCTGACTCCGATT 1130506 28 100.0 116 NNNNNNNNNN .G.................C.....T.. TTCGGATTCCGACAGTGATTCGGATTCCGACAGTGATTCCGACTCCGACAGTGATTCCGACTCCGACAGCGACTCCGATTCGGACAGCGACTCTGACTCGGACAGCGATTCGGACT 1130650 28 100.0 110 NNNNNNNNNN .T.................C........ TTCGGACTCTGACAGCGACTCCGACTCCGACAGCGACTCCGATTCGGACAGTGACTCGGATGCTGACAGTGACTCCGATTCGGACAGCGACTCTGACTCCGACTCGGATT 1130788 28 100.0 86 NNNNNNNNNN .T...............G.......T.. CTCAGACTCCGACAGTGATTCGGATTCTGACAGCGACTCGGATTCTGACTCCGACAGCGACTCGGACTCCGACAGCGACTCCGACT 1130902 28 100.0 74 NNNNNNNNNN ................C..C........ TTCGGATTCGGACTCCGATTCCGACTCCGACTCCGATTCCGACAGCGACTCTGACTCCGACAGTGATTCGGACT 1131004 28 100.0 110 NNNNNNNNNN .T..............C..C........ CTCGGATTCGGACAGCGACTCCGACTCCGACTCCGACTCTGACTCTGACTCCGACTCGGACAGCGATTCGGATTCCGACAGCGACTCGGACTCCGACAGCGACTCCGACT 1131142 28 100.0 80 NNNNNNNNNN .T.................C........ TTCCGACTCCGACAGTGATTCCGACTCCGACAGCGACTCCGATTCGGACAGCGACTCTGACTCCGACAGTGACTCGGATT 1131250 28 100.0 80 NNNNNNNNNN .T...........C..C..C........ CTCGGATTCCGACAGCGACTCGGACTCGGACAGCGACTCCGATTCGGACAGCGACTCTGACTCGGACAGTGATTCCGACT 1131358 28 100.0 80 NNNNNNNNNN .T..............C..C.....T.. TTCGGATTCGGACAGCGACTCCGATTCTGACAGCGACTCCGATTCTGACAGCGACTCCGACTCGGACAGCGACTCGGACT 1131466 28 100.0 68 NNNNNNNNNN ..........C.....C..C........ CTCTGACTCCGATTCGGACAGCGATTCCGACAGCGACAGCGATTCGGATTCCGACAGTGACTCCGATT 1131562 28 100.0 62 NNNNNNNNNN .......T........C........... TTCGGATTCCGACAGTGATTCGGATGCTGACAGCGACTCTGACTCCGACAGCGATTCGGATT 1131652 28 100.0 44 NNNNNNNNNN .T........C..T..C........... TTCGGATGCTGACAGCGACTCTGACTCCGACAGCGATTCGGATT 1131724 28 100.0 62 NNNNNNNNNN .T........C..T..C........... TTCGGATTCTGACAGTGACTCGGACTCGGACAGCGACTCAGACTCTGACAGCGATTCGGATT 1131814 28 100.0 62 NNNNNNNNNN .T.....T..C.....C..G........ CTCAGACTCTGACAGCGATTCGGATTCCGACAGCGATTCGGACTCCGACAGCGATTCCGATT 1131904 28 100.0 62 NNNNNNNNNN .......T........C........... TTCGGATTCTGACAGCGACTCCGATTCGGACAGTGATTCCGACTCTGACAGTGACTCGGATT 1131994 28 100.0 26 NNNNNNNNNN .T.....T..C.....C..G........ CTCAGACTCTGACAGCGATTCGGATT 1132048 28 100.0 50 NNNNNNNNNN ................C..C........ TTCCGATTCCGACAGTGATTCGGACTCTGACAGCGATTCGGATTCTGACA 1132126 28 100.0 56 NNNNNNNNNN G....TC.........CAG...TTC... CTCTGACAGTGACTCGGATTCTGACAGCGATTCTGACTCGGACAGCGACTCTGACT 1132210 28 100.0 38 NNNNNNNNNN .......T........C..C........ CTCTGACTCTGACTCCGATTCGGACAGCGATTCCGATG 1132276 28 100.0 62 NNNNNNNNNN .T..............C..C.....T.. TTCGGATTCTGACAGCGATTCGGATTCCGACAGTGACTCCGATTCTGACAGCGACTCCGATT 1132366 28 100.0 80 NNNNNNNNNN .T........C..C..C..G........ CTCCGACTCCGACAGCGACTCGGACTCCGACAGCGATTCCGACAGCGACAGCGACTCCGATTCCGACAGTGACTCGGATT 1132474 28 100.0 44 NNNNNNNNNN .G........C..C.....G.....T.. TTCCGACTCCGACAGCGACTCGGATTCTGACAGCGATTCGGATT 1132546 28 100.0 62 NNNNNNNNNN .T.....T.....C.....G.....T.. TTCGGATGCTGACAGCGACTCTGACTCCGACAGCGATTCCGATTCTGACAGCGACTCAGACT 1132636 28 100.0 62 NNNNNNNNNN .G........C..C...........T.. TTCGGACTCTGACAGCGACTCGGATTCTGACAGCGATTCCGATTCGGACAGTGACTCGGATG 1132726 28 100.0 62 NNNNNNNNNN .T........C..C.....G.....T.. TTCCGACTCCGACAGTGATTCGGATTCGGACAGCGACTCCGACTCCGACAGCGACTCGGACT 1132816 28 100.0 80 NNNNNNNNNN .T........C..C.....G........ CTCTGACTCCGACAGTGACTCGGATTCTGACAGCGATTCCGACTCCGACAGCGACTCGGATTCCGACAGCGACTCGGACT 1132924 28 100.0 62 NNNNNNNNNN .G........C..C.....G........ CTCTGACTCGGACAGTGATTCCGACTCTGACAGCGATTCGGACTCCGACAGTGATTCGGATT 1133014 28 100.0 44 NNNNNNNNNN .G........C..C.............. CTCCGATTCTGACAGCGACTCCGACTCGGACAGCGACTCGGACT 1133086 28 100.0 68 NNNNNNNNNN ..........C.....C..C........ CTCTGACTCCGATTCGGACAGCGATTCCGACAGCGACAGCGATTCGGATTCCGACAGTGACTCCGATT 1133182 28 100.0 44 NNNNNNNNNN .......T........C........... TTCGGATTCCGACAGTGATTCGGATGCTGACAGCGACTCTGACT 1133254 28 100.0 44 NNNNNNNNNN ............................ CTCTGACTCTGACAGCGATTCGGATGCTGACAGCGACTCTGACT 1133326 28 100.0 62 NNNNNNNNNN ............................ CTCTGACTCTGACAGCGATTCGGATTCTGACAGTGACTCGGACTCGGACAGCGACTCAGACT 1133416 28 100.0 26 NNNNNNNNNN .T.......................T.. CTCGGACTCGGACAGCGACTCAGACT 1133470 28 100.0 44 NNNNNNNNNN .T.................C........ TTCGGACTCCGACAGCGATTCCGATTCCGACAGTGATTCGGACT 1133542 28 100.0 26 NNNNNNNNNN .T.......................... CTCCGATTCGGACAGTGATTCCGACT 1133596 28 100.0 26 NNNNNNNNNN .T.....T..C................. TTCTGACTCGGACAGCGACTCTGACT 1133650 28 100.0 56 NNNNNNNNNN .......T........C..C........ CTCTGACTCTGACTCCGATTCGGACAGCGATTCCGATGCTGACAGCGATTCGGACT 1133734 28 100.0 26 NNNNNNNNNN .......T.................... TTCGGATTCCGACAGTGACTCCGATT 1133788 28 100.0 26 NNNNNNNNNN .T........C..C.............. CTCCGACTCGGACAGCGACTCCGACT 1133842 28 100.0 56 NNNNNNNNNN ................C..C........ TTCGGATTCGGACTCCGATTCCGACTCCGACTCCGATTCCGACAGCGACTCTGACT 1133926 28 100.0 56 NNNNNNNNNN .......T........C........... TTCGGACTCCGACAGCGACTCGGATTCGGACAGCGACTCCGACTCCGACTCCGACT 1134010 28 100.0 26 NNNNNNNNNN .T...TCT..C..C..C..G........ TTCGGATTCCGACAGCGACTCGGACT 1134064 28 100.0 44 NNNNNNNNNN ..........C..C..C........... TTCGGATTCCGACAGCGATTCCGACTCCGACAGTGATTCCGACT 1134136 28 100.0 44 NNNNNNNNNN ..........C..C.....G........ CTCTGACTCCGACAGTGACTCGGATTCTGACAGCGATTCCGACT 1134208 28 100.0 62 NNNNNNNNNN ..........C........C........ CTCGGACTCGGACAGCGACTCCGATTCGGACAGCGACTCTGACTCGGACAGTGATTCCGACT 1134298 28 100.0 62 NNNNNNNNNN .T..............C..C.....T.. TTCGGATTCGGACAGCGACTCCGATTCTGACAGCGACTCCGATTCTGACAGCGACTCCGACT 1134388 28 100.0 32 NNNNNNNNNN .G........C.....C..C........ CTCGGACTCCGACAGCGACTCTGACTCCGATT 1134448 28 100.0 26 NNNNNNNNNN .G...........C..CAGC........ TTCGGATTCCGACAGTGACTCCGATT 1134502 28 100.0 44 NNNNNNNNNN .......T........C........... TTCGGATTCCGACAGTGATTCGGATGCTGACAGCGACTCTGACT 1134574 28 100.0 44 NNNNNNNNNN ............................ CTCTGACTCTGACAGCGATTCGGATGCTGACAGCGACTCTGACT 1134646 28 100.0 62 NNNNNNNNNN ............................ CTCTGACTCTGACAGCGATTCGGATTCTGACAGTGACTCGGACTCGGACAGCGACTCAGACT 1134736 28 100.0 26 NNNNNNNNNN .T.......................T.. CTCGGACTCGGACAGCGACTCAGACT 1134790 28 100.0 44 NNNNNNNNNN .T.................C........ TTCGGACTCCGACAGCGATTCCGATTCCGACAGTGATTCGGACT 1134862 28 100.0 26 NNNNNNNNNN .T.......................... CTCCGATTCGGACAGTGATTCCGACT 1134916 28 100.0 26 NNNNNNNNNN .T.....T..C................. TTCTGACTCGGACAGCGACTCTGACT 1134970 28 100.0 56 NNNNNNNNNN .......T........C..C........ CTCTGACTCTGACTCCGATTCGGACAGCGATTCCGATGCTGACAGCGATTCGGACT 1135054 28 100.0 26 NNNNNNNNNN .......T.................... TTCGGATTCCGACAGTGACTCCGATT 1135108 28 100.0 26 NNNNNNNNNN .T........C..C.............. CTCCGACTCGGACAGCGACTCCGACT 1135162 28 100.0 50 NNNNNNNNNN ..........C.....C..C........ CTCTGACTCCGATTCGGACAGCGATTCCGACAGCGACAGCGACTCCGATT 1135240 28 100.0 62 NNNNNNNNNN .......T..C........G........ CTCCGATTCGGACAGTGATTCCGACTCCGACAGCGATTCGGATTCCGACAGCGATTCGGACT 1135330 28 100.0 80 NNNNNNNNNN .T.....T..C................. TTCCGACTCCGACAGTGATTCGGATTCTGACAGCGACTCAGACTCCGACAGCGACTCGGACTCTGACAGCGATTCGGACT 1135438 28 100.0 56 NNNNNNNNNN .T.....T..C..C.....G........ CTCTGACTCTGACAGCGACTCGGACTCTGACTCCGATTCTGACAGCGACTCCGACT 1135522 28 100.0 62 NNNNNNNNNN .......T..C..C.....G........ TTCCGACAGCGACAGTGACTCGGATTCCGACAGTGATTCCGACTCCGACAGCGATTCGGACT 1135612 28 100.0 38 NNNNNNNNNN .T.....T..C........G........ CTCCGATTCGGACAGTGATTCCGACAGCGACTCGGACT 1135678 28 100.0 44 NNNNNNNNNN ..........C............TC... CTCTGATTCCGACAGCGACTCAGACTCCGACAGCGACTCTGACT 1135750 28 100.0 38 NNNNNNNNNN .T........C.....C......TC... TTCTGACAGCGACTCCGATTCCGACAGTGACTCGGACT 1135816 28 100.0 26 NNNNNNNNNN .T.....T..C.....C........T.. CTCGGATTCTGACAGCGATTCTGACT 1135870 28 100.0 38 NNNNNNNNNN .G........C..T..C..C.....T.. TTCGGACTCCGACAGCGACTCGGATGCTGACAGCGACT 1135936 28 100.0 62 NNNNNNNNNN .....TC...C..C..C..C.....T.. TTCGGATTCTGACAGCGATTCGGACTCTGACAGTGACTCGGATTCGGACAGCGACTCTGACT 1136026 28 100.0 26 NNNNNNNNNN .T........C..C.....C........ TTCGGACTCTGACAGTGACTCGGATT 1136080 28 100.0 74 NNNNNNNNNN .G........C..C.....G.....T.. TTCCGACAGCGACTCGGACTCCGACAGCGACTCGGATTCTGACTCCGACTCTGATTCCGACAGCGATTCGGACT 1136182 28 100.0 26 NNNNNNNNNN .T.....T..C..C.....G........ CTCGGACTCCGACAGCGACTCGGACT 1136236 28 100.0 44 NNNNNNNNNN .......T...........G........ CTCCGACTCCGACTCGGATTCGGACAGCGACTCCGATTCGGACT 1136308 28 100.0 32 NNNNNNNNNN .............C.....C........ CTCGGACTCCGACAGCGACAGTGATTCGGACT 1136368 28 100.0 38 NNNNNNNNNN .G........C..T..C..G........ CTCGGATGCTGACAGCGACTCCGACTCCGACTCCGACT 1136434 28 100.0 26 NNNNNNNNNN ..........C..T..C..G........ TTCGGACTCTGACAGTGACTCCGATT 1136488 28 100.0 26 NNNNNNNNNN .G........C..T..C........... CTCCGATTCCGACAGTGACTCGGATT 1136542 28 100.0 44 NNNNNNNNNN ..........C..A..C........T.. CTCGGATTCTGACAGCGACTCGGATTCTGACAGCGACTCGGATT 1136614 28 100.0 32 NNNNNNNNNN .G........C..T..C........... CAGTGATTCGGATGCTGACAGCGACTCTGACT 1136674 28 100.0 26 NNNNNNNNNN ............................ TTCGGACTCCGACAGCGACTCGGACT 1136728 28 100.0 56 NNNNNNNNNN .T........C..C.....G........ CTCTGACTCGGACAGTGATTCCGACTCTGACAGCGATTCGGACTCGGACAGTGACT 1136812 28 100.0 26 NNNNNNNNNN ..........C..T..C..G........ TTCGGACTCTGACAGTGACTCCGATT 1136866 28 100.0 62 NNNNNNNNNN .G........C................. TTCGGATTCTGACAGCGACTCGGATTCTGACAGCGATTCTGACTCTGACAGTGACTCCGATT 1136956 28 100.0 62 NNNNNNNNNN .G........C..T..C..C........ CTCGGACTCTGACAGCGATTCCGACTCTGACAGCGATTCGGATTCCGACAGTGACTCGGATT 1137046 28 100.0 80 NNNNNNNNNN .T..............C..G........ CTCGGACTCTGACAGTGATTCCGACTCTGACAGCGACTCGGATTCTGACAGTGACTCGGATTCTGACAGCGACTCGGATG 1137154 28 100.0 98 NNNNNNNNNN .T..............C........T.. CTCCGATTCGGACAGCGACTCTGACTCCGACAGCGACTCTGACTCTGACAGTGATTCCGACTCTGACAGCGATTCGGATTCCGACAGCGACTCGGATT 1137280 28 100.0 1 NNNNNNNNNN .T...........T..C........T.. NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 89 28 53 CCGACAGCGATTCGGATTCTGACAGCGA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [7,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [106-116] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [1111,4385] Score: 0.18/0.18 # # Final direction: F [0.78,0.18 Confidence: MEDIUM] >NC_009654 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3035594 28 100.0 32 ACCACCAAAT ............................ CCCTTCCTCGATTATGTCGCCAAGTTGAGATA 3035654 28 96.4 32 AGTTGAGATA .........T.................. TTGACGAGAACGGTGTTCTTAAATTCATGGAT 3035714 28 96.4 32 ATTCATGGAT ............A............... TAAGTGAAATTATTAAAAGGGCATTAGCTCAA 3035774 28 100.0 32 ATTAGCTCAA ............................ TCGTAGTTATCGACGGTGAAGGTAATCCAGTT 3035834 28 100.0 33 TAATCCAGTT ............................ AACGTACTAAATATGTCGAACTACTGCCACTCT 3035895 28 100.0 32 CTGCCACTCT ............................ TAAAAAATTATAAAACTATTAAATCCAATAAT 3035955 28 100.0 33 ATCCAATAAT ............................ GGATTGCCGCGCTCGTTTGAAGTGCGCGAGAGC 3036016 28 100.0 33 GCGCGAGAGC ............................ TATCATTTTTTAACAACCTCGTCGCACCAAACT 3036077 28 100.0 32 GCACCAAACT ............................ TAGTCCGGTTGATAGTCAGGCTAGGGCTAGAT 3036137 28 100.0 32 AGGGCTAGAT ............................ GCTATGCTTGACTCTGATTACCTTCCTGATGA 3036197 28 100.0 32 TTCCTGATGA ............................ GACAACGGTATGCCGGGCAATGTATCCGGTAC 3036257 28 85.7 35 TATCCGGTAC .......T.................--- GACATAAAGAAACTTTACTCGTAGCATGCCTCCAT 3036320 28 100.0 32 ATGCCTCCAT ............................ CAGATATTTCTAACATTAAGACCTACGAACCA 3036380 28 100.0 32 CTACGAACCA ............................ CACTTCCATCATGCATTTTGAAAAATTGGAGA 3036440 28 100.0 32 AAATTGGAGA ............................ ATGATCCTTTTCGCCTCTGGAACGACTTTGAA 3036500 28 100.0 32 CGACTTTGAA ............................ TCCGAAACGGTAATGATTTACGGATATCGATA 3036560 28 100.0 32 GATATCGATA ............................ TGTCCGCGATGTTCTGATTATCTGATTTGACA 3036620 28 100.0 32 TGATTTGACA ............................ TGTTTTTTCTCATTGCCTGACCGTTCTTTATC 3036680 28 100.0 32 GTTCTTTATC ............................ GTCTTGGTGGCGGTGGGCTATACGGGGTTTTT 3036740 28 100.0 32 CGGGGTTTTT ............................ TATCAAGCTTATTTAGAGGAAGATAACTGGGA 3036800 28 100.0 32 ATAACTGGGA ............................ TTATACCGTACCGAAAAGATGGGTGTGCGTAA 3036860 28 100.0 32 GTGTGCGTAA ............................ AAAGTGGCGCGGCGCACCTTTATCACTTGATT 3036920 28 100.0 32 TCACTTGATT ............................ AGCCTTCGATTTATTAAGCTTGAAGCACAGCA 3036980 28 100.0 32 AAGCACAGCA ............................ TCATCTGGATCATCTGTGAAGGCGTCCACATC 3037040 28 100.0 32 CGTCCACATC ............................ CACACCCTTTTATTAGGTCCATACTGCCACAC 3037100 28 100.0 32 ACTGCCACAC ............................ TATCATTAGCTTTTAGTGTATAACTTGACTGT 3037160 28 100.0 32 ACTTGACTGT ............................ CCAGCGGAATTGTCAGTTTACGATATGGGTTT 3037220 28 100.0 32 ATATGGGTTT ............................ TGCCCACACCCCCGCTTTCCCTTTCAGCTCAG 3037280 28 100.0 TTCAGCTCAG ............................ ATAGTGTATT ========== ====== ====== ====== ========== ============================ 29 28 32 TTTCTAAGCCGCGTGCTCGGCGGCGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.90,-5.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [40.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [826,128] Score: 0.18/0.18 # # Final direction: R [0.55,1.05 Confidence: LOW] >NC_009641 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 2393437 23 100.0 33 NNNNNNNNNN ....................... CATTATTGTATGCTGACTTTTCGTCACCTTCTG 2393493 23 100.0 36 NNNNNNNNNN .............TTCC.CAA.T TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA 2393552 23 100.0 33 NNNNNNNNNN ....................... CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG 2393608 23 100.0 1 NNNNNNNNNN .....................T. NNNNNNNNNN ========== ====== ====== ====== ========== ======================= 4 23 34 TGTTGGGGCCCCGCCAACTTGCA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.90,-2.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [357,143] Score: 0.18/0.18 # # Final direction: R [0.55,0.78 Confidence: LOW] >NC_009656 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1204501 29 100.0 31 NNNNNNNNNN ............................. CGACGACGGCCAGCAACAGCGTCACCCTCGG 1204561 29 100.0 31 NNNNNNNNNN ............................. GCGGCAACATCACCACCAGCGCGGACATCAG 1204621 29 100.0 31 NNNNNNNNNN ............................. TGCGTTCAGAAGTCTTCATGCCGCAGTCCTC 1204681 29 100.0 31 NNNNNNNNNN ............................. CGGTGTCGCCGCAGCTTTACGCCCTGGCGTT 1204741 29 100.0 31 NNNNNNNNNN ............................. TCGTGATCAATGCCCGCCATGATTTCGCCGG 1204801 29 100.0 1 NNNNNNNNNN ............................T NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 6 29 31 GTTCACTGCCGTATAGGCAGCTAAGAAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.17%AT] # Reference repeat match suggestion: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [61.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [273,673] Score: 0.18/0.18 # # Final direction: F [1.55,0.18 Confidence: HIGH] >NC_009656 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2886935 28 100.0 32 TTTTGGTCTA ............................ TAACTGTTTCGACAGTTCGCAATGCCAATGAA 2886995 28 100.0 32 TGCCAATGAA ............................ GTTGAAGCGCACCAGGCCCGACTCCTCACCGA 2887055 28 100.0 32 TCCTCACCGA ............................ TCTCCGCCGTTACCAACGCCATGAACCACGCG 2887115 28 100.0 32 GAACCACGCG ............................ ATGCTCCTGCGCAACGAGTTGATCGACGTGCT 2887175 28 100.0 TCGACGTGCT ............................ TGATGGCTGCA ========== ====== ====== ====== ========== ============================ 5 28 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.57%AT] # Reference repeat match suggestion: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [397,37] Score: 0.18/0.18 # # Final direction: F [1.05,0 Confidence: HIGH] >NC_009654 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3991376 29 100.0 32 NNNNNNNNNN G.T.......................... TTAGAGTCTACGGCCAACGGTGCAGGCGGGAT 3991437 29 100.0 32 NNNNNNNNNN ............................. GCGCCTCAGTCACTAAGTGATTGGGGCGTTTT 3991498 29 100.0 32 NNNNNNNNNN ............................. AGACGCGCCACACGACCAAGAGAAGTACAGCA 3991559 29 100.0 32 NNNNNNNNNN ............................. ACCCACGTCACCGCGGCTTTCCAGCGCTGTTT 3991620 29 100.0 32 NNNNNNNNNN ............................. TGGAAAGGTAAGACACCTTCTTGAACAAAGCG 3991681 29 100.0 32 NNNNNNNNNN ..............A.............. CTGGTAAAACTGTTTCAGTAACTCAAAGTTGG 3991742 29 100.0 32 NNNNNNNNNN ............................. GAGCGGTAAAGTGCAAAAGTTGCTCTTTACCG 3991803 29 100.0 32 NNNNNNNNNN ............................. GTATGCACTCAAGCCCTGCTATTTCGTCTGGC 3991864 29 100.0 32 NNNNNNNNNN ............................. CCACTCGTTATGGTTGGCTCCATGCTGTCGCC 3991925 29 100.0 32 NNNNNNNNNN ............................. CCGCCATACTATCCCGCCCTCTATCGTTCAAC 3991986 29 100.0 32 NNNNNNNNNN ............................. ATTCCCATACTATCCCCCTATTGACCGCCATA 3992047 29 100.0 32 NNNNNNNNNN ............................. ATAAGTCGACTAAGCCTGAAGCGGGTATTTTG 3992108 29 100.0 32 NNNNNNNNNN ............................. GCGATTTTGTCATTAAAGTCGGCATGGGCAAA 3992169 29 100.0 32 NNNNNNNNNN ............................. ACCGAAACGAACATGACGATAAACACCATCAT 3992230 29 100.0 32 NNNNNNNNNN ............................. TTTGTAACTGATTGGGTACGTCTAAAAGCTGC 3992291 29 100.0 32 NNNNNNNNNN ............................. TAAAAGAATATTTTTTTTGGGGCTTTCTATCG 3992352 29 100.0 32 NNNNNNNNNN ............................. CGGTGCGACGGCATTAATGAACGCAACTTGAC 3992413 29 100.0 32 NNNNNNNNNN ............................. GCGAAGACAAAGCCAGCATTGCATTTAAAAAC 3992474 29 100.0 32 NNNNNNNNNN ............................. TCCATCTAATAAGATCATTGTTGGCACCCTTC 3992535 29 100.0 32 NNNNNNNNNN ............................. GGAAAAGAGCTGATTTGGCAAATCTATAAATT 3992596 29 100.0 32 NNNNNNNNNN ............................. TCGTTGGCGATGGCTCGGATTTCGAGGCGCGT 3992657 29 100.0 32 NNNNNNNNNN ............................. CTAGCTGTTAGCGGCACTATCTGTTTTTCTCG 3992718 29 100.0 32 NNNNNNNNNN ............................. CCATGACTGAGCATTTAAACAAGCATCCAAAA 3992779 29 100.0 32 NNNNNNNNNN ............................. GATGAAAACAGCGCAGCACGGAAGCTATAAGG 3992840 29 100.0 32 NNNNNNNNNN ............................. GCCAGCGATAAGTACAACCGCGTAACCGTTAC 3992901 29 100.0 32 NNNNNNNNNN ............................. ATAAGTCGACTAAGCCTGAAGCGGGTATTTTG 3992962 29 100.0 32 NNNNNNNNNN ............................. GCGATTTTGTCATTAAAGTCGGCATGGGCAAA 3993023 29 100.0 32 NNNNNNNNNN ............................. ACCGAAACGAACATGACGATAAACACCATCAT 3993084 29 100.0 32 NNNNNNNNNN ............................. TTTGTAACTGATTGGGTACGTCTAAAAGCTGC 3993145 29 100.0 32 NNNNNNNNNN ............................. TAAAAGAATATTTTTTTTGGGGCTTTCTATCG 3993206 29 100.0 32 NNNNNNNNNN ............................. ACCAGCTCGCCCCCTACCGAGGAGCCTCCAAG 3993267 29 100.0 32 NNNNNNNNNN ............................. TTTACCGCCAAGCCCCGCGATACACTCGGCAG 3993328 29 100.0 32 NNNNNNNNNN ............................. CAAATGGTACGTACACAATGGACAGAAAAGAT 3993389 29 100.0 32 NNNNNNNNNN ............................. TGCCAGGACGAAAAACAGTTACCAAAGGAGCG 3993450 29 100.0 32 NNNNNNNNNN ............................. CTAGTATGATTCCGCGTGTTCTACTGCTAGGC 3993511 29 100.0 32 NNNNNNNNNN ............................. TTTATTGAAATCTATAAAACTTCAGCATCTAA 3993572 29 100.0 32 NNNNNNNNNN ............................. ACACTTACCAATATGCCGAGATGCGGAACACC 3993633 29 100.0 32 NNNNNNNNNN ............................. ACATTATTGGCGCGTTAACGCTTCGTTTTGAT 3993694 29 100.0 32 NNNNNNNNNN ............................. TGGCACCCCCTGAACATGCCAAAGAAAGCCGC 3993755 29 100.0 32 NNNNNNNNNN ............................. TCATGTTGCCAAAGGAAAGGCGAAAGCGCGCC 3993816 29 100.0 32 NNNNNNNNNN ............................. GTTTTACATATTCGCTAGTTGGGTTGTTATCG 3993877 29 100.0 32 NNNNNNNNNN ............................. GGAGTGTTTGGCATGCTTGCTTTGGGTATTTG 3993938 29 100.0 32 NNNNNNNNNN A............................ AGTCGAGGGAGCGTTCGGGTTTGGAGAGTCTG 3993999 29 100.0 32 NNNNNNNNNN ............................. TCGCGTGGAGTAGGGCGACCAAAATCATAGAA 3994060 29 100.0 32 NNNNNNNNNN ............................. GAAATCATGTTTTAAAAGCACGATTGAATCCC 3994121 29 100.0 33 NNNNNNNNNN ............................. GCAGGGCGACGAGCACGATTTGTGGAAGTCGAG 3994183 29 100.0 32 NNNNNNNNNN ............................. GCTCCCCCAAAGACGGTTAATTTTGATAATCG 3994244 29 100.0 32 NNNNNNNNNN ............................. CCAAGCCTGCACCATCTTGGTTCTGAGATCGT 3994305 29 100.0 32 NNNNNNNNNN ............................. ATATGACTTTTTAGAGCCTCGCATTCGCGGGG 3994366 29 100.0 33 NNNNNNNNNN ............................. TCCAGCTATGTGTTAAATGAGCTAATGCGGCGG 3994428 29 100.0 32 NNNNNNNNNN ............................. ATTATTTTTGTAGCCTATATCCTCATTGAATC 3994489 29 100.0 32 NNNNNNNNNN ............................. TCAGTCAGCAAATCGATAGCAACCAGCATACC 3994550 29 100.0 32 NNNNNNNNNN ............................. TGATCATGGCGCCTATCTGAATGGATTGGTGC 3994611 29 100.0 32 NNNNNNNNNN ............................. GGATGAATCGTGCGCCCTCTTCCAAGGAAAGC 3994672 29 100.0 33 NNNNNNNNNN ............................. GTTAAGTCTGAGCGGGTTTGCTCTATTAGTCGC 3994734 29 100.0 32 NNNNNNNNNN ............................. GCTAGAGCATGCAAATTGAATGGTGTGCTGAT 3994795 29 100.0 32 NNNNNNNNNN ............................. CAATGTGGCAGACGTATGACCATCACGACTAT 3994856 29 100.0 32 NNNNNNNNNN ............................. AATGATTTCCCTGTAGGCTTTCCGTCCTGATT 3994917 29 100.0 32 NNNNNNNNNN ............................. GGCGAAATAGACGAACGCCAACTAGAAACCGT 3994978 29 100.0 32 NNNNNNNNNN ............................. CTCGTAAGTTGGGCATTATTAGTGAAGTGGAG 3995039 29 100.0 32 NNNNNNNNNN ............................. TGCCTCGTTGTTTTCTTCTTGGCTCTCTTGCC 3995100 29 100.0 32 NNNNNNNNNN ............................. CACCAAAAAGTACCGTTCATTTTTTCCGCCAA 3995161 29 100.0 32 NNNNNNNNNN ............................. CCTATGGATTTCTTGTGCTAACTCCTGAACAG 3995222 29 100.0 32 NNNNNNNNNN ............................. TTTCAGGTAGGTTCTTCTCAATCTTCGACATG 3995283 29 100.0 32 NNNNNNNNNN ............................. CGGTTGCGTCTCCCGTTGCTGATCGGGTGATA 3995344 29 100.0 32 NNNNNNNNNN ............................. CGTAATCGTCTTGCTTTGGCTTGTTGCTAGGA 3995405 29 100.0 32 NNNNNNNNNN ............................. GGCAGACGAGTGGCAAAACTCTATGTCTGCCA 3995466 29 100.0 32 NNNNNNNNNN ............................. TATTTGATGCTGTCCCCTATGAGGGCGATACG 3995527 29 100.0 32 NNNNNNNNNN ............................. GTTGGCCGCGTCCTGAAGCAGACCGCTACAAC 3995588 29 100.0 32 NNNNNNNNNN ............................. CACCACGAATTAGGAAGATATATAAAGGGCTG 3995649 29 100.0 32 NNNNNNNNNN ............................. AATACACATCCCAGATCACATTATTCACGATG 3995710 29 100.0 32 NNNNNNNNNN ............................. AGTATGAACAAGCGACGCACAAAGCTCTTGCG 3995771 29 100.0 32 NNNNNNNNNN ............................. AATTTTGACGAACAAGCTCAGGATCAGGCCCA 3995832 29 100.0 32 NNNNNNNNNN ............................. TCAATTCAGAGTAAAAGTTTTTTACCCTAAAA 3995893 29 100.0 32 NNNNNNNNNN ............................. ATCCGCATCAGCATGGCCGAAGGTCAAACCGT 3995954 29 100.0 32 NNNNNNNNNN ............................. TACGTGATGACGCAGACATTGCCATTTTCACG 3996015 29 100.0 32 NNNNNNNNNN ............................. CTCAGCTTGCAGCCGTACGCCGCCGTCTTTAA 3996076 29 100.0 32 NNNNNNNNNN ............................. TGACGGCAGAACAGCCAAGATCTAGCCGATGG 3996137 29 100.0 32 NNNNNNNNNN ............................. GACGAATAACTGCCGTTTTAGCCTCCCCTGTT 3996198 29 100.0 32 NNNNNNNNNN ............................. GAAAATAGACAACACCGAACAATATCGGCGAT 3996259 29 100.0 32 NNNNNNNNNN ............................. GGGAATCTTTTTATAAACCGTTATTCTAATAT 3996320 29 100.0 32 NNNNNNNNNN ............................. GTCGCCGCGCCATCCATTAGGAATCGTTTTAA 3996381 29 100.0 32 NNNNNNNNNN ............................. TCGAACGGCGGCCACTCTCGATCAATCCTAGC 3996442 29 100.0 32 NNNNNNNNNN ............................. GTCAGTACCAATATCAGGTCCAAGTCCTAACA 3996503 29 100.0 32 NNNNNNNNNN ............................. ATACCAACCACCTGATTCATCAATGAAATCGA 3996564 29 100.0 32 NNNNNNNNNN ............................. GAAAAATGAGTGAAGTAATCTGGAAACAAGAA 3996625 29 100.0 32 NNNNNNNNNN ............................. CGTTCTTTCATTTTGTTGGTACTGGCCACACA 3996686 29 100.0 32 NNNNNNNNNN ............................. TCTGAAACGAAGTGAGCACAATTGTAATTTTC 3996747 29 100.0 32 NNNNNNNNNN ............................. ATTATCTGGCTATTAAAACCAAAAACGAAGAG 3996808 29 100.0 32 NNNNNNNNNN ............................. TTGAGACGAGTCAAGTACGGTAGGTGAACCCG 3996869 29 100.0 32 NNNNNNNNNN ............................. TACGGTATGGTGGTAAACCCTTAGTACCTCTA 3996930 29 100.0 32 NNNNNNNNNN ............................. CAATACGCGGGTTAGGTAGTGACGAATAACAG 3996991 29 100.0 32 NNNNNNNNNN ............................. CGGCACAAAAACAAGTGGCCGAACGCGAAAAT 3997052 29 100.0 32 NNNNNNNNNN ............................. TGGGGTATTTCGGTTCGGCGTTTGATGTCCGT 3997113 29 100.0 32 NNNNNNNNNN ............................. GGCGTTAGCGGTTGAATATCTAATGTCCCGCC 3997174 29 100.0 32 NNNNNNNNNN ............................. TTCTTTTCAACGTGGACATTCTGCGTTTAACC 3997235 29 100.0 32 NNNNNNNNNN ............................. TATGAAATGCGAGAGTGTTTCTAACTTCAGCT 3997296 29 100.0 32 NNNNNNNNNN ............................. TGCAACTAATTCTTGGCTCACGTAACACCTCA 3997357 29 100.0 32 NNNNNNNNNN ............................. TTGCCGTATATGAGCTCAACGCAATCGGTACG 3997418 29 100.0 32 NNNNNNNNNN ............................. GTTAGGTGGCACAAAGCATTTTTGCTCTTTCG 3997479 29 100.0 32 NNNNNNNNNN ............................. ACTTATAGTATTCAGCATCACCATTATTAATT 3997540 29 100.0 32 NNNNNNNNNN ............................. ACACGATCTGCAATCTGCTTAGCCTGTTCTAA 3997601 29 100.0 32 NNNNNNNNNN ............................. TTATTAGCAAGTGACAACCCCAGCGCATTAAA 3997662 29 100.0 32 NNNNNNNNNN ............................. TTTTAAACTCGAATTCACGACTTTGCTGTTTT 3997723 29 100.0 32 NNNNNNNNNN ............................. CGAACCTCGGTCGGTCATCGCTGCTTTTTTTG 3997784 29 100.0 32 NNNNNNNNNN ............................. AATCACAGGAGCGAATTAAGTCATTTCAAGCG 3997845 29 100.0 33 NNNNNNNNNN ............................. GGCCACATTGATCCAGATCGATACGGTGAACTG 3997907 29 100.0 32 NNNNNNNNNN ............................. ATTTTCTATAGTGTTGTCTTTAAATGTTGTTG 3997968 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 109 29 32 CGGTTTATCCCCGTGTGCTCGGGGAACGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-9.50,-9.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [36.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [432,84] Score: 0.18/0.18 # # Final direction: R [0.55,1.05 Confidence: LOW] >NC_009655 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1440909 32 100.0 35 NNNNNNNNNN ................................ GCCGTTTTCGGCGATCAATTAGCCGCGCTCTATGC 1440976 32 100.0 33 NNNNNNNNNN ................................ AGCGTTGTGTTGAACAAGCAGTTGAGCAAATAA 1441041 32 100.0 36 NNNNNNNNNN ................................ TGATGCATCACGCGTAGTCCCAACCGCAGCCGAAAA 1441109 32 100.0 37 NNNNNNNNNN ................................ CAATTCACCATCGTACCGAAATCCGAGGGTTTCGGCA 1441178 32 100.0 35 NNNNNNNNNN ................................ CCGCCGGGATGGTGATGCCGGCGGCCTCTTTGGCG 1441245 32 100.0 35 NNNNNNNNNN ................................ GTTAAAGCGCAGTTTAACACTGCAACAACATTAAA 1441312 32 100.0 33 NNNNNNNNNN ................................ GCGAAATCAACCATGCTTAAAAAATTGTATTTG 1441377 32 100.0 34 NNNNNNNNNN ................................ GCGTTATCGGTTTCCGCCGGCAAAGCAAGGGTAA 1441443 32 100.0 35 NNNNNNNNNN ................................ AGCGCGTTAGCATGATTTGCTTGTTTAGTTTTTAG 1441510 32 100.0 35 NNNNNNNNNN ............G................... GCAAGTATAGTTTACGCCGGGAAAAACGAGGAGGT 1441577 32 100.0 36 NNNNNNNNNN ................................ ATCAAGCGTTGAAGGTGCGGATATTAATAGCGGTAT 1441645 32 100.0 1 NNNNNNNNNN ............G...........TGCTT.CT NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 12 32 34 GCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-5.50,-5.30] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [193,71] Score: 0.18/0.18 # # Final direction: R [0.59,0.64 Confidence: LOW] >NC_009655 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 436472 36 100.0 30 CAGCGTCCCA .................................... GATGGATTAGTTCCGTCGGGGCTTTTTATT 436538 36 100.0 30 GCTTTTTATT .................................... GCTAGAAAGCTCGACATCCTTAAAAAGCCT 436604 36 100.0 30 TAAAAAGCCT .................................... TCGTTCTGTTATTCAGGCGTTCGCTAACGG 436670 36 100.0 30 TCGCTAACGG .................................... GATTAAGGATGGGCTTAATCGCACCGTGCA 436736 36 100.0 30 GCACCGTGCA .................................... AAACAACTGTACCAGTTGAATTACGTTGAG 436802 36 100.0 30 TTACGTTGAG .................................... TCCATATTGCTCCTTATTTATGCAACCATT 436868 36 100.0 TGCAACCATT .................................... TACTGGGTCG ========== ====== ====== ====== ========== ==================================== 7 36 30 ATTATAGCACTGCGAAATGAAAAAGGGAGCTACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.00,-0.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [66,93] Score: 0/0.18 # # Final direction: F [0.64,0 Confidence: HIGH] >NC_009665 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3860878 28 100.0 32 NNNNNNNNNN .C...G...T.................. CCTCATTTAAACGAGTTTCTAACCGCCAGCCG 3860938 28 100.0 32 NNNNNNNNNN ...............C............ TTGTGAAATGCTGTTTGTTACAAAGCCTGTCA 3860998 28 100.0 32 NNNNNNNNNN ............................ TGCTTTGATGCCTTTTAGCATCTCCGCTAACT 3861058 28 100.0 32 NNNNNNNNNN ............................ TCTTGGATAATTGGTTTTCCACGGCGCAGCAT 3861118 28 100.0 32 NNNNNNNNNN ............................ ACGCTGCTTCTGCGTTTAGCGGTACTTGGTTA 3861178 28 100.0 32 NNNNNNNNNN ............................ GTAAGCCCTAGCTATGCTGGGGCTTTTTTTAT 3861238 28 100.0 32 NNNNNNNNNN ............................ AGCTATTAGCGGATAGCGCAATTGATATCGAT 3861298 28 100.0 32 NNNNNNNNNN ............................ CATTGCAAACGCCTTAAGCTGTAGTCCTTACA 3861358 28 100.0 32 NNNNNNNNNN ............................ TACAAGGTCTTGCTGGCCTAGATGGTCAGGAT 3861418 28 100.0 32 NNNNNNNNNN ............................ AAACAGTACCAAACACAGTACTAATTTGGGCT 3861478 28 100.0 32 NNNNNNNNNN ............................ GAAAACACAAAAAACTGCGTATGGTGCGACTG 3861538 28 100.0 32 NNNNNNNNNN ............................ TTTGATTATTGGGTTTGCTGGTTTGTTTTATT 3861598 28 100.0 32 NNNNNNNNNN ............................ ACTAATACGGCTATGATGAACATCTTCGGCAA 3861658 28 100.0 32 NNNNNNNNNN ............................ TAACCAAAGGGTCTGTTACGGTAGTCGGTGAA 3861718 28 100.0 32 NNNNNNNNNN ............................ ACGACGAGGGTTTGTTAACTTAGCCGTCAGCA 3861778 28 100.0 32 NNNNNNNNNN ............................ ACGGTGTGCCAAATATCAACGCTCTAAAGTGG 3861838 28 100.0 32 NNNNNNNNNN ............................ GCCCTGGTTCGGTTTTACTGGTTTGAGATACA 3861898 28 100.0 32 NNNNNNNNNN ............................ TGATGGGTTATACCTCTGTGGGTATTGCGGCG 3861958 28 100.0 32 NNNNNNNNNN ............................ ATGGAGTCGTAGAATCTTTCATCTGGTCTTCT 3862018 28 100.0 32 NNNNNNNNNN ............................ ATTCTCTTTTGCAGCAAATGAATTCTTTATTG 3862078 28 100.0 32 NNNNNNNNNN ............................ CTGTTGCATTCCCACGTATATATGACGATAAA 3862138 28 100.0 32 NNNNNNNNNN ............................ GCCAGTGCAGTCGTTAACGGATTGCGTTGATT 3862198 28 100.0 32 NNNNNNNNNN ............................ CTTGATGATGTTTTTGGCGTAGCTGGTTGGCA 3862258 28 100.0 32 NNNNNNNNNN ............................ GGGAACGGTTCTCAAGAGAAGTCTCGGTAACA 3862318 28 100.0 32 NNNNNNNNNN ............................ GGTTTGCATACCGCATCGGCAATTTGGCTTAA 3862378 28 100.0 32 NNNNNNNNNN ............................ TTACCGTGGTGCGCGGCGAAACCTCCGCCAAC 3862438 28 100.0 32 NNNNNNNNNN ............................ GATGACGGCGCGACATTTAGCCTATTTTCAGA 3862498 28 100.0 32 NNNNNNNNNN ............................ CAGAAATATCGCGCGCGCGGTATCGGCGTTCT 3862558 28 100.0 32 NNNNNNNNNN ............................ CTTTGCGGAGGTCGAAATCGAAATTGACGTAA 3862618 28 100.0 32 NNNNNNNNNN ............................ GTACCAGCGACTTGCTATTGGTTTTTGTTGGT 3862678 28 100.0 32 NNNNNNNNNN ............................ TTAAATACTCTTCGACGATTGGCAGCCATTTA 3862738 28 100.0 32 NNNNNNNNNN ............................ TTGAAGATTTAGCCGTCGAGCAAGGCTGCGTA 3862798 28 100.0 32 NNNNNNNNNN ..................A......... TATTTTAATAAGTTCCTCATGCTCTTCATTGA 3862858 28 100.0 32 NNNNNNNNNN ............................ TAGTAGAACAACGGATACTCTTTCTTGCCTAA 3862918 28 100.0 32 NNNNNNNNNN ............................ ATTATTCGCAGTGTACTTTTCTATCTTGCCAT 3862978 28 100.0 32 NNNNNNNNNN ............................ TGGCTAGTGACGCTTGCCCGATTTGCTCAGTA 3863038 28 100.0 32 NNNNNNNNNN ............................ TGTTAATGTGTCTTTTTGTTGCTTAACTTCTG 3863098 28 100.0 32 NNNNNNNNNN ............................ ATCCAGTACAGGTTCAAATCCCTCTAGCTGAA 3863158 28 100.0 32 NNNNNNNNNN ............................ GCATTAGCTTAATAACTCCATGACTTCGACAC 3863218 28 100.0 32 NNNNNNNNNN ............................ GACGGTGATTTCTTTCGGGCTGTTGTACGGAC 3863278 28 100.0 32 NNNNNNNNNN ............................ CTGGCCGTTTAACACTGGATTTTGTGCTTGAA 3863338 28 100.0 32 NNNNNNNNNN ............................ ATAATGCTGCAATGTTTCCTGACCGAAAACTT 3863398 28 100.0 32 NNNNNNNNNN ............................ GGTCGCGGTGCGTTGCATCACTTTATCAAACT 3863458 28 100.0 32 NNNNNNNNNN ............................ CGCGATTTGCGCCCCGCGTTGGCTTAGATAGT 3863518 28 100.0 32 NNNNNNNNNN ............................ CTAATTGCAATTCGTGATAGCGGCGACCGATT 3863578 28 100.0 32 NNNNNNNNNN ............................ ATTCTATTTCATTGGCCTTATCGTAAACCGTA 3863638 28 100.0 32 NNNNNNNNNN ............................ ACAGTTTTAAATCTTATGATTGTCGTAATTCT 3863698 28 100.0 32 NNNNNNNNNN ............................ AACAGAGAGCAAAGCCATGGTTGCACTAAATA 3863758 28 100.0 32 NNNNNNNNNN ............................ TTACGGCCAATGCGTTTTATTCCATTCTTATG 3863818 28 100.0 32 NNNNNNNNNN ............................ CCCAAAAGCAGCTCGAAAAAGTCAGGTTAACA 3863878 28 100.0 32 NNNNNNNNNN ............................ GACAAAGTCCTCATGAAATGGTATCTCTATAC 3863938 28 100.0 32 NNNNNNNNNN ............................ CAAAGAACCAACAAAGTGGCAGGACATAGTTA 3863998 28 100.0 32 NNNNNNNNNN ............................ TGACGAACTTCTAACCTGCCTCGCTAGAAAAG 3864058 28 100.0 32 NNNNNNNNNN ............................ TACATAACCGGTCGAATTTGGAGCATAATATC 3864118 28 100.0 32 NNNNNNNNNN ............................ ATTTAACAGGTGATTTATATGCCGAGCTATGA 3864178 28 100.0 32 NNNNNNNNNN ............................ ACATCGATACTAGGTGAGTTTTTGACCCGCCT 3864238 28 100.0 32 NNNNNNNNNN ............................ CCGCAATACCAATGTATTTGGTGTTCACCGTA 3864298 28 100.0 32 NNNNNNNNNN ............................ AGAGAATTATCGGGTTGCTGAACAACGCATAA 3864358 28 100.0 32 NNNNNNNNNN ............................ CCACGCGAAACGCATGATTTTGTTCCTAGAGA 3864418 28 100.0 32 NNNNNNNNNN ............................ AACATCGCACCAGGCGGGTCAAAAACTCACTT 3864478 28 100.0 32 NNNNNNNNNN ............................ CTTACCTTCAATCGGTACTGTTCGACGATATT 3864538 28 100.0 33 NNNNNNNNNN ............................ GTGGATATAACAACATCGACAACGTAAGGGGCT 3864599 28 100.0 32 NNNNNNNNNN ............................ CTTGGAAGTTTGTACCGCGCTTGCCCTTAGGT 3864659 28 100.0 32 NNNNNNNNNN ............................ CTGAGATTAACGTCATATCGCAACCTACAGAG 3864719 28 100.0 32 NNNNNNNNNN ............................ ATTTCTCATTCGAATCGCGCGCGACTTCCATC 3864779 28 100.0 32 NNNNNNNNNN ............................ ATAAAGCTGAGTTTGTCGGGGTGTTTGATATA 3864839 28 100.0 32 NNNNNNNNNN ............................ ACTTCCTGCATTTCAAGACGCAACCGTACAAA 3864899 28 100.0 32 NNNNNNNNNN ............................ TTATTAGCGGAACTGAAAAGGCCACCGCTTGG 3864959 28 100.0 32 NNNNNNNNNN ............................ ACCTTACACCTCTGAACTCTGTCACTTTATAT 3865019 28 100.0 32 NNNNNNNNNN ............................ TCCCACCAGTTTGGATGTCTCAATCGATGGGT 3865079 28 100.0 32 NNNNNNNNNN ............................ AAATATTTACGGGTACAGTAATATCAACAAGT 3865139 28 100.0 32 NNNNNNNNNN ............................ CAAACAGCGTTAGAGCCTATCCTCGCACTGAT 3865199 28 100.0 32 NNNNNNNNNN ............................ GCCCCAATCAATGCGATAATTGCAAAGAAAAG 3865259 28 100.0 32 NNNNNNNNNN ............................ TTTGTTGGCGCTGCATTAAAAAATCCGTGTTT 3865319 28 100.0 32 NNNNNNNNNN ............................ TTATGCCATTGGCGCAGAGTTTTGACTCTGTA 3865379 28 100.0 32 NNNNNNNNNN ............................ GCAAGGACAGAAGAGCGCTCTCAAGCACTGGA 3865439 28 100.0 32 NNNNNNNNNN ............................ ATATCCGCGCGCCAGCTAGGGCTATGCTTTAA 3865499 28 100.0 32 NNNNNNNNNN ............................ TCACGCATGGTCGGCAGACCACTTTGATAGGT 3865559 28 100.0 32 NNNNNNNNNN ............................ ATTTATCAGTTTATGTGGTTGTGGTAATTTTA 3865619 28 100.0 32 NNNNNNNNNN ............................ TCAATCGCAATCACTGCGATGTGCTTCCACTT 3865679 28 100.0 32 NNNNNNNNNN ............................ GAAGATATTGAAGCCGCCAAACGATTGATGGC 3865739 28 100.0 32 NNNNNNNNNN ............................ TTGAGCGGTCACAGTGTTCAGTTCAGCGTATT 3865799 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 83 28 32 TTTCTAAGCCGCCTGTGCGGCGGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-9.50,-10.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [195,132] Score: 0/0.18 # # Final direction: R [0,1.42 Confidence: HIGH] >NC_009674 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2126097 29 100.0 36 TTTTTGCTGT ............................. GCGAATGGTATGTGCTGAAGACTATCAAAAAATAAC 2126162 29 100.0 37 AAAAAATAAC ............................. TTTTGGTCGTTACCTGTATGTGTGTTTACCTCCATGA 2126228 29 100.0 36 ACCTCCATGA ............................. CTTTTTTGGTCTCGCAGCTTTCCACATCATGAATTT 2126293 29 100.0 35 TCATGAATTT ............................. CCTTAAAGCTACAGCGAACGTTAAGCGGTCATTGA 2126357 29 100.0 CGGTCATTGA ............................. CCCTATAAAA ========== ====== ====== ====== ========== ============================= 5 29 36 CTTTATATCCCACTACGTTCAGATAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.52%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [298,225] Score: 0/0.18 # # Final direction: NA [0,0 Confidence: NA] >NC_009674 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2135668 29 100.0 36 NNNNNNNNNN T.A.C.TAT.................... TTTCTAACAATGTCCAAAAACCATTGAATACATTGG 2135733 29 100.0 37 NNNNNNNNNN A............................ TGGGACAAACATGCTACTTTCTTGAACGCTCAGTCAA 2135799 29 100.0 36 NNNNNNNNNN ............................. AGGATTTCACGGAGCGATTGCAAAGAAAAACATCCC 2135864 29 100.0 36 NNNNNNNNNN ............................. CCGTGTTGGTGGCGTTGGTGGTGCATTGCAAACCGT 2135929 29 100.0 37 NNNNNNNNNN ............................. CACTGAAATTAGTGTCGTCTAAAACAGAGACGTTTCC 2135995 29 100.0 37 NNNNNNNNNN ............................. TGAACCATTTTTCAATAATCAATATTCCTTTCTTAAG 2136061 29 100.0 36 NNNNNNNNNN ............................. TCGTGCGACCAAGCGGAAATGGTAGCGCACGGATCA 2136126 29 100.0 38 NNNNNNNNNN ............................. ACGCGCGTAGTGTAGAAGACTTTGCACGCGGTATCGTG 2136193 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 9 29 36 CTTTATATCCCACTACGTTCAGATAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.52%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [61.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [947,288] Score: 0.18/0.18 # # Final direction: R [0.18,0.68 Confidence: MEDIUM] >NC_009674 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2135734 29 96.6 37 ATACATTGGA -............................ TGGGACAAACATGCTACTTTCTTGAACGCTCAGTCAA 2135800 29 100.0 36 GCTCAGTCAA ............................. AGGATTTCACGGAGCGATTGCAAAGAAAAACATCCC 2135865 29 100.0 36 AAAACATCCC ............................. CCGTGTTGGTGGCGTTGGTGGTGCATTGCAAACCGT 2135930 29 100.0 37 TGCAAACCGT ............................. CACTGAAATTAGTGTCGTCTAAAACAGAGACGTTTCC 2135996 29 100.0 37 AGACGTTTCC ............................. TGAACCATTTTTCAATAATCAATATTCCTTTCTTAAG 2136062 29 100.0 36 CTTTCTTAAG ............................. TCGTGCGACCAAGCGGAAATGGTAGCGCACGGATCA 2136127 29 100.0 38 GCACGGATCA ............................. ACGCGCGTAGTGTAGAAGACTTTGCACGCGGTATCGTG 2136194 29 100.0 CGGTATCGTG ............................. CCTATAAAAA ========== ====== ====== ====== ========== ============================= 8 29 36 CTTTATATCCCACTACGTTCAGATAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.52%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [68.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1013,287] Score: 0.18/0.18 # # Final direction: R [0.18,0.68 Confidence: MEDIUM] >NC_009697 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2230709 30 100.0 36 NNNNNNNNNN G............CT............... TTATATGGTATTTAAGGTTATAGATAAATTAACTGG 2230775 30 100.0 35 NNNNNNNNNN ...........C.................. CTTAAATATATAGGTATAGATCAAGACGCTAAAGA 2230840 30 100.0 36 NNNNNNNNNN .............................. TCTTAACCTTTAATTACATTATATATTATAAGTTCA 2230906 30 100.0 36 NNNNNNNNNN ..............T......C........ ATTTCATCAAATCCGCATCAATAAATGAGATAAACT 2230972 30 100.0 37 NNNNNNNNNN .............................. TAAATTATACCTTAATGCTTATCAATATAGTCTTGTA 2231039 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 6 30 36 ATTTAAATACATCTCATGTTAATGTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [134,292] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_009697 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2237707 30 90.0 36 CATTTCTTGC --....G....................... TGAACTTATGAAAGAACTAGAGTGTGGAGAACCCTT 2237773 30 100.0 36 GAGAACCCTT .............................. ATTAGGTTTGCCACCACATTCCGTTACTGCAGTAGT 2237839 30 100.0 38 CTGCAGTAGT .............................. TTAAGTATGATAATATAAAACCTTGGTAAATATATTAA 2237907 30 96.7 AATATATTAA ............T................. GAAAAAGGTA ========== ====== ====== ====== ========== ============================== 4 30 36 ATTTAAATACATCTCATGTTAATGTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [222,1515] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_009697 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 2237712 23 100.0 43 NNNNNNNNNN ....................... TGAACTTATGAAAGAACTAGAGTGTGGAGAACCCTTATTTAAA 2237778 23 100.0 43 NNNNNNNNNN ....................... ATTAGGTTTGCCACCACATTCCGTTACTGCAGTAGTATTTAAA 2237844 23 100.0 45 NNNNNNNNNN ....................... TTAAGTATGATAATATAAAACCTTGGTAAATATATTAAATTTAAA 2237912 23 100.0 42 NNNNNNNNNN .....T................. GAAAAAGGTAAATTAGCAAGTGCAAAAGATTTAGAATTTAAA 2237977 23 100.0 1 NNNNNNNNNN ....................... NNNNNNNNNN ========== ====== ====== ====== ========== ======================= 5 23 43 TACATCTCATGTTAATGTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:69.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [227,1452] Score: 0.18/0.18 # # Final direction: F [0.41,0.18 Confidence: MEDIUM] >NC_009697 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 2238493 31 100.0 36 NNNNNNNNNN .GC..........ATC......AG....... TGGTAAGCAAAGCATATCTTCAGAGTTGTTTATCTA 2238560 31 100.0 35 NNNNNNNNNN .............T....A............ AAATGTAGATAGGCAATTTTTTAAAGAAAATAGAA 2238626 31 100.0 37 NNNNNNNNNN A.............T................ ACGAATAGGGGGTGATAAATATTGTTATTTGGACAAA 2238694 31 100.0 34 NNNNNNNNNN ............................... GATAAAACCAATCTATTAACCTGTATAACTGCCT 2238759 31 100.0 1 NNNNNNNNNN ............................... NNNNNNNNNN ========== ====== ====== ====== ========== =============================== 5 31 35 TATTTAAATACATCCTATGTTACTGTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:74.19%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [53.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [1008,662] Score: 0/0.18 # # Final direction: R [0,0.68 Confidence: HIGH] >NC_009697 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2253703 29 100.0 43 NNNNNNNNNN .G.TTT.TTCAA.ACAT........A.TG TTCAATAATAGAGTATTCAGATGAATATAAATTCTTGGAAGAA 2253775 29 100.0 38 NNNNNNNNNN ............................. TAGAGGTGATTTTATATGAAAAAGGAAAACATAACAAG 2253842 29 100.0 37 NNNNNNNNNN ............................. CGACCCTATAACAGTTTCAGAAGTAGAACAAAATATG 2253908 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 4 29 39 TTTAAATACATCTCATGTTAATGTTCAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1295,213] Score: 0.18/0.18 # # Final direction: R [0.18,0.78 Confidence: MEDIUM] >NC_009697 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 2253775 31 93.5 36 CTTGGAAGAA -.............................T AGAGGTGATTTTATATGAAAAAGGAAAACATAACAA 2253842 31 100.0 35 AACATAACAA ............................... GACCCTATAACAGTTTCAGAAGTAGAACAAAATAT 2253908 31 100.0 AACAAAATAT ............................... ACAGTAAAATAGCCATTCCTTA ========== ====== ====== ====== ========== =============================== 3 31 35 GTTTAAATACATCTCATGTTAATGTTCAATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:74.19%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1367,211] Score: 0.18/0.18 # # Final direction: R [0.18,0.78 Confidence: MEDIUM] >NC_009698 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2230928 30 100.0 36 NNNNNNNNNN G............CT............... TTATATGGTATTTAAGGTTATAGATAAATTAACTGG 2230994 30 100.0 35 NNNNNNNNNN ...........C.................. CTTAAATATATAGGTATAGATCAAGACGCTAAAGA 2231059 30 100.0 36 NNNNNNNNNN .............................. TCTTAACCTTTAATTACATTATATATTATAAGTTCA 2231125 30 100.0 36 NNNNNNNNNN ..............T......C........ ATTTCATCAAATCCGCATCAATAAATGAGATAAACT 2231191 30 100.0 37 NNNNNNNNNN .............................. TAAATTATACCTTAATGCTTATCAATATAGTCTTGTA 2231258 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 6 30 36 ATTTAAATACATCTCATGTTAATGTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [134,292] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_009698 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2237926 30 90.0 36 CATTTCTTGC --....G....................... TGAACTTATGAAAGAACTAGAGTGTGGAGAACCCTT 2237992 30 100.0 36 GAGAACCCTT .............................. ATTAGGTTTGCCACCACATTCCGTTACTGCAGTAGT 2238058 30 100.0 38 CTGCAGTAGT .............................. TTAAGTATGATAATATAAAACCTTGGTAAATATATTAA 2238126 30 96.7 AATATATTAA ............T................. GAAAAAGGTA ========== ====== ====== ====== ========== ============================== 4 30 36 ATTTAAATACATCTCATGTTAATGTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [222,1515] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_009698 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 2237931 23 100.0 43 NNNNNNNNNN ....................... TGAACTTATGAAAGAACTAGAGTGTGGAGAACCCTTATTTAAA 2237997 23 100.0 43 NNNNNNNNNN ....................... ATTAGGTTTGCCACCACATTCCGTTACTGCAGTAGTATTTAAA 2238063 23 100.0 45 NNNNNNNNNN ....................... TTAAGTATGATAATATAAAACCTTGGTAAATATATTAAATTTAAA 2238131 23 100.0 42 NNNNNNNNNN .....T................. GAAAAAGGTAAATTAGCAAGTGCAAAAGATTTAGAATTTAAA 2238196 23 100.0 1 NNNNNNNNNN ....................... NNNNNNNNNN ========== ====== ====== ====== ========== ======================= 5 23 43 TACATCTCATGTTAATGTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:69.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [227,1452] Score: 0.18/0.18 # # Final direction: F [0.41,0.18 Confidence: MEDIUM] >NC_009698 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 2238712 31 100.0 36 NNNNNNNNNN .GC..........ATC......AG....... TGGTAAGCAAAGCATATCTTCAGAGTTGTTTATCTA 2238779 31 100.0 35 NNNNNNNNNN .............T....A............ AAATGTAGATAGGCAATTTTTTAAAGAAAATAGAA 2238845 31 100.0 37 NNNNNNNNNN A.............T................ ACGAATAGGGGGTGATAAATATTGTTATTTGGACAAA 2238913 31 100.0 34 NNNNNNNNNN ............................... GATAAAACCAATCTATTAACCTGTATAACTGCCT 2238978 31 100.0 1 NNNNNNNNNN ............................... NNNNNNNNNN ========== ====== ====== ====== ========== =============================== 5 31 35 TATTTAAATACATCCTATGTTACTGTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:74.19%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [53.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [1008,662] Score: 0/0.18 # # Final direction: R [0,0.68 Confidence: HIGH] >NC_009698 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2253922 29 100.0 43 NNNNNNNNNN .G.TTT.TTCAA.ACAT........A.TG TTCAATAATAGAGTATTCAGATGAATATAAATTCTTGGAAGAA 2253994 29 100.0 38 NNNNNNNNNN ............................. TAGAGGTGATTTTATATGAAAAAGGAAAACATAACAAG 2254061 29 100.0 37 NNNNNNNNNN ............................. CGACCCTATAACAGTTTCAGAAGTAGAACAAAATATG 2254127 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 4 29 39 TTTAAATACATCTCATGTTAATGTTCAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1295,213] Score: 0.18/0.18 # # Final direction: R [0.18,0.78 Confidence: MEDIUM] >NC_009698 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 2253994 31 93.5 36 CTTGGAAGAA -.............................T AGAGGTGATTTTATATGAAAAAGGAAAACATAACAA 2254061 31 100.0 35 AACATAACAA ............................... GACCCTATAACAGTTTCAGAAGTAGAACAAAATAT 2254127 31 100.0 AACAAAATAT ............................... ACAGTAAAATAGCCATTCCTTA ========== ====== ====== ====== ========== =============================== 3 31 35 GTTTAAATACATCTCATGTTAATGTTCAATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:74.19%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1367,211] Score: 0.18/0.18 # # Final direction: R [0.18,0.78 Confidence: MEDIUM] >NC_009699 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2359371 30 100.0 35 NNNNNNNNNN GC.C.......................... ATAGATGAAATAGAAATAGTTATAGATTTAATTGA 2359436 30 100.0 36 NNNNNNNNNN .............................. GTTAAAGAAGATGAAAAAAGTAAATAGGTGATATTA 2359502 30 100.0 35 NNNNNNNNNN .............................. GGACATGAAGATATACTAGCCACACCGTTAGACTA 2359567 30 100.0 34 NNNNNNNNNN .............................. ATAATAAATATGCATGTGAATATGTACTTAGCTT 2359631 30 100.0 1 NNNNNNNNNN ..............C............... NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 5 30 35 ATTTAAATACATCTTATGTTATTGTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:80.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [223,82] Score: 0.18/0.18 # # Final direction: R [0.18,0.68 Confidence: MEDIUM] >NC_009699 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2352566 30 90.0 36 AGTTCTCTGC --...................A........ ACATAATCAGATGTTAGAAGTACTTCACGAATTAAG 2352632 30 100.0 37 ACGAATTAAG .............................. TAGATAAAGATAGGACAATAGAATATTTTACATTAGA 2352699 30 100.0 35 TTACATTAGA .............................. GCGGCTATGGGAAACATAGAAGCTGAATCCGAATT 2352764 30 100.0 AATCCGAATT .............................. CATAGTAAAA ========== ====== ====== ====== ========== ============================== 4 30 36 ATTTAAATACATCTTATGTTACTGTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1025,261] Score: 0.18/0.18 # # Final direction: R [0.18,0.68 Confidence: MEDIUM] >NC_009707 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1654299 36 97.2 30 CTAGGGTTTA -................................... TCGTCTGGTGAAAATTCTATTACTTCGGGA 1654365 36 100.0 30 TACTTCGGGA .................................... CTAAGCAATCTTATTTTACCATCTTTTTTA 1654431 36 100.0 30 ATCTTTTTTA .................................... CTAAGCAATCTTATTTTACCATCTTTTTTA 1654497 36 100.0 30 ATCTTTTTTA .................................... AGCTGAACCACTAATATTGGAGCAATTACC 1654563 36 100.0 30 AGCAATTACC .................................... TAAGAAAAAAACATTAACCTTATTTGTATC 1654629 36 100.0 TATTTGTATC .................................... AGATATTTAC ========== ====== ====== ====== ========== ==================================== 6 36 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:77.78%AT] # Reference repeat match suggestion: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [122,145] Score: 0/0.18 # # Final direction: R [0.5,0.68 Confidence: LOW] >NC_009699 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 2359435 32 96.9 34 GATTTAATTG -............................... GTTAAAGAAGATGAAAAAAGTAAATAGGTGATAT 2359501 32 100.0 33 TAGGTGATAT ................................ GGACATGAAGATATACTAGCCACACCGTTAGAC 2359566 32 100.0 32 ACCGTTAGAC ................................ ATAATAAATATGCATGTGAATATGTACTTAGC 2359630 32 93.8 TGTACTTAGC .T..............C............... CATAGTAAAAT ========== ====== ====== ====== ========== ================================ 4 32 33 TAATTTAAATACATCTTATGTTATTGTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:81.25%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [287,81] Score: 0.18/0.18 # # Final direction: F [0.59,0 Confidence: HIGH] >NC_009699 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2360354 30 100.0 36 NNNNNNNNNN GC............................ TTTAGAAAAAAATAACGCTTTTGATGATTTATATAA 2360420 30 100.0 36 NNNNNNNNNN ......................G....... GAACACCAGTTACAATAGATGGAAAAGAATATACAA 2360486 30 100.0 35 NNNNNNNNNN .............................. CTTATCGCTATCATAAACTATATCACCATCATAAT 2360551 30 100.0 36 NNNNNNNNNN .......................A...... AGGTGAAGAAATTGGAGATACTTTAGAAGCAGTTTG 2360617 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 5 30 35 ATTTAAATACATCTTATGTTAATGTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:80.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [477,713] Score: 0/0.18 # # Final direction: R [0,1.05 Confidence: HIGH] >NC_009699 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2373882 30 100.0 58 NNNNNNNNNN T.C.T.T..T..A....A.....T..T..T ATATTATGTTATTGCATTCAACAACAGTTTGATATCAGTCCCCTTATGGGACGTGCAA 2373970 30 100.0 37 NNNNNNNNNN .........T....T..A............ GACTTAGTGAATTTGAAGGATCTGGCAGAGAATTTGG 2374037 30 100.0 36 NNNNNNNNNN .............................. CCCGGGGGTGTATAAGATATTCTTTTTCCTTATTTG 2374103 30 100.0 35 NNNNNNNNNN .............................. GGTATTTCTTGATTAGTTGCAAGTATATTTTCCCA 2374168 30 100.0 1 NNNNNNNNNN ............A.............T... NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 5 30 41 ATTTAAATACATCTCATGTTAATGTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [13-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [189,213] Score: 0/0.18 # # Final direction: R [0,0.78 Confidence: HIGH] >NC_009708 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1786721 28 100.0 32 TTATCTTACT ............................ AGATACAGGCGAAACCATATTTTATATGAACC 1786781 28 100.0 32 TATATGAACC ............................ GCTATCGACGCCGACAAATCCGTCAGCAGAGA 1786841 28 100.0 33 TCAGCAGAGA ............................ TTTACGATACAATTAATCTCGGTCAATGTCTTG 1786902 28 100.0 32 CAATGTCTTG ............................ TCGTTCACCTGAGCGCTTGACTTCAATATTAG 1786962 28 100.0 32 TCAATATTAG ............................ GATGTCCATTACGAACCTCGGCAGTAATGTAT 1787022 28 100.0 32 AGTAATGTAT ............................ TATGAGAGGTAGCCTTTAGTAGCGCAATGCTT 1787082 28 100.0 32 CGCAATGCTT ............................ ATATGGATCAAAGTCAGGCAGCTCCACCTCGA 1787142 28 100.0 32 TCCACCTCGA ............................ GCTGAATCTACGCCATCACTCGCTTTCTGAAT 1787202 28 100.0 32 CTTTCTGAAT ............................ AGAACAATAAGAGAAAGCGGAGTAAAGGCGGT 1787262 28 100.0 32 TAAAGGCGGT ............................ AATCTGGCGGCGCATTATCTGGTTTTATGTAT 1787322 28 100.0 33 TTTTATGTAT ............................ ACAATCAGCTATTAAAGAAGAAGAAGCATTTAA 1787383 28 100.0 33 AAGCATTTAA ............................ ATGTTCGACGATTCATTTTATCTGTATTTCAGT 1787444 28 100.0 33 GTATTTCAGT ............................ ACTAATAGTTGGCCAGCTGTAGGCTCGTCTGCA 1787505 28 100.0 32 CTCGTCTGCA ............................ CGGATAAAGGTCCATCAATGACAAGCTGAAAT 1787565 28 100.0 32 AAGCTGAAAT ............................ AGAATTTACAGCCGTTATTTAGCATTGCTGCC 1787625 28 100.0 32 CATTGCTGCC ............................ ATTTACCCGTTCAAATTTAGGAATATAGAGAA 1787685 28 100.0 32 ATATAGAGAA ............................ ATCATTATCGATAAATGCGCGACGCATACGAG 1787745 28 100.0 32 CGCATACGAG ............................ AAAAAATCTGGGATATTAAACGCTGTTGCACA 1787805 28 100.0 32 CTGTTGCACA ............................ TGGAGCGTAAAACCTCGTTAACCCCTTCTATT 1787865 28 100.0 32 CCCTTCTATT ............................ GGACAGTGTCATGAATTTGGCCCGTGCCGCGT 1787925 28 100.0 32 CGTGCCGCGT ............................ TCCATGACACCGGCACGCGTCAACACCGAAAT 1787985 28 100.0 32 ACACCGAAAT ............................ AGAACCATTTCAGCCGCTTGCTTACCACTCAT 1788045 28 100.0 32 TACCACTCAT ............................ GCAATCCGATGAATTCAATCTACCTGCTATCT 1788105 28 100.0 CCTGCTATCT ............................ TCCTAGGCGCTTACCCATTCCATAGCGATCGTT ========== ====== ====== ====== ========== ============================ 24 28 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [339,422] Score: 0/0.18 # # Final direction: F [1.51,0 Confidence: HIGH] >NC_009706 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2823013 30 96.7 35 TTGCAATGCA ......................G....... TATATGCTATAGACGCAAATTCCCTTATACCTTTC 2823078 30 96.7 36 TATACCTTTC ......................G....... TATAAAAGAATACATAAAACAAAAGAAGATAGTTGT 2823144 30 96.7 36 AGATAGTTGT ......................G....... TAATGTACTGGTAATAGATAACAAACAAGCTGTAGA 2823210 30 100.0 35 AAGCTGTAGA .............................. GGATAAATAGATGAATCAATATGCATTACTTATTT 2823275 30 100.0 36 TTACTTATTT .............................. CCTTTACGAATAACAATATAATTTCCTCTATCTAAA 2823341 30 100.0 36 TCTATCTAAA .............................. GGATAGCTGCGGCGCTAGGGCCATTACTTTTAATTT 2823407 30 100.0 36 CTTTTAATTT .............................. CTTATAAATCACTTTGTATCACCAACACTCCTTTCT 2823473 30 100.0 36 ACTCCTTTCT .............................. TATTTTCATCTAATTCAAATTCATCTGGATAAATCA 2823539 30 100.0 35 GGATAAATCA .............................. TATTGCAGAGGGAATTATGTATATAGCATACCTTT 2823604 30 100.0 36 GCATACCTTT .............................. TTTCCGAGGAAGACCAATGTCCCCTTCGGTATTTTG 2823670 30 100.0 36 CGGTATTTTG .............................. ATATTTACACAGTTCTACTTCTATATTGTTAAGATT 2823736 30 100.0 TGTTAAGATT .............................. CATCAGCACC ========== ====== ====== ====== ========== ============================== 12 30 35 ATTTAAATACAATCCTTGTTAAAGTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [65.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [321,111] Score: 0.18/0.18 # # Final direction: F [0.45,0 Confidence: MEDIUM] >NC_009706 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2367226 30 100.0 33 TTAAAAATGG .............................. CAACCACCTTCTTAACCTTATAAAATTGTGTTC 2367289 30 100.0 36 AATTGTGTTC .............................. TTATACTGCCTGAAAAGCCAAATATCCATAAGCATT 2367355 30 96.7 35 CATAAGCATT .......................A...... AATTACCAATATTTTTACCTAAAGTTTTTAATCTT 2367420 30 100.0 36 TTTTAATCTT .............................. TTTTTAGTAAGAGGACTTAACCATTTTGGCAGCTCT 2367486 30 100.0 37 TGGCAGCTCT .............................. ACACTATATTTTTGAATATCACCTTGTAGTATTTTAG 2367553 30 100.0 35 AGTATTTTAG .............................. TTGTATCCCCATCAATTCCTCTATTCTTTATAGAT 2367618 30 100.0 36 CTTTATAGAT .............................. CAGCAAAGATTATGGAATTATAAGGAGGAAATTTAA 2367684 30 100.0 36 GGAAATTTAA .............................. TTTCCTATATTAATCAACATTTTATTTTCTCATGTT 2367750 30 100.0 34 TTCTCATGTT .............................. CTTGTGGTATTAAAACAATCCTGTCTGGTACTCC 2367814 30 100.0 36 CTGGTACTCC .............................. CTAGGATATGCATTTTTATTCTTTTTAATAATTCTT 2367880 30 100.0 AATAATTCTT .............................. CAATGTAAAT ========== ====== ====== ====== ========== ============================== 11 30 35 ATTTAAATACAATCCTTGTTAAGGTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:73.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.60,-1.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [98,209] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_009706 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2825194 30 100.0 34 CCGTTACTGT .............................. TTGTACATAGTTACTAGGGTTGCCCCGTTTATGG 2825258 30 100.0 36 CCGTTTATGG .............................. GCATCTGCAAACTCTCCTAAAACTGCGGTTGTGTCC 2825324 30 100.0 35 GGTTGTGTCC .............................. CTCGCAAAGTTCTTTTCAAACATCTCAAGAGCCTG 2825389 30 100.0 36 CAAGAGCCTG .............................. TCTGAATTAACTACAAATATAACGTTGTCTCTTATG 2825455 30 100.0 34 GTCTCTTATG .............................. CCAAGGATTTAATAGAAGAAATACATAATTTAGA 2825519 30 100.0 37 ATAATTTAGA .............................. AGTAGTTGCTGTAAGAGGTGCCATATCAATATTAGGT 2825586 30 100.0 AATATTAGGT .............................. TAATGTAAAA ========== ====== ====== ====== ========== ============================== 7 30 35 ATTTAAATACAATCCTTGTTAAAGTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [66.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [65,180] Score: 0.18/0.18 # # Final direction: R [0,0.45 Confidence: MEDIUM] >NC_009706 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2835088 30 100.0 27 NNNNNNNNNN TA.ATTT.....CA.........G...... ATAAATTTAAACATTTACCATTAAAAT 2835145 30 100.0 36 NNNNNNNNNN .......................G...... TCATATTGAATCATATCATCAGTTTTTTCTATGGCA 2835211 30 100.0 36 NNNNNNNNNN .......................G...... GTATCCAAAGCTTCTGGAGCTGCATCTATTACCATT 2835277 30 100.0 36 NNNNNNNNNN .......................G...... TATTAAGAGATGCCTTGAGTTATGGAGCAATCCTAA 2835343 30 100.0 37 NNNNNNNNNN .......................G...... CTAAGTCAATATAGTTTTGTATTTCAGGTATCAGCTT 2835410 30 100.0 36 NNNNNNNNNN .......................G...... CTGACCTGTAATTGCAAGTGCAGCAGCCAGCCATTG 2835476 30 100.0 35 NNNNNNNNNN .......................G...... CCTGTACAAAATGTGCTTTTGGTTGTAAACCCATC 2835541 30 100.0 36 NNNNNNNNNN .......................G...... ATTTAGGATCAATATTAAATATCTCCTTTCTGGAGT 2835607 30 100.0 36 NNNNNNNNNN .......................G...... CTCGATCTTTTCAATGTCTGTTACTGCTATTTTGTC 2835673 30 100.0 36 NNNNNNNNNN .......................G...... TCCTGTGTTCTTCTATTTTACTTTCGTTATAGGCCT 2835739 30 100.0 36 NNNNNNNNNN .......................G...... TACTGTATTTCAAATTATCACAGGATATTCTAACAA 2835805 30 100.0 37 NNNNNNNNNN .......................G...... TTAGTCATTTCAGTTGGATAGTGTTCAGCATAACTTG 2835872 30 100.0 35 NNNNNNNNNN .............................. TATAACATTTTTAGTGCTTCATATCTTCTTTCCCC 2835937 30 100.0 36 NNNNNNNNNN .............................. TATGGAATTTAGCAAAGGCAGAAGAATCAATACTTT 2836003 30 100.0 34 NNNNNNNNNN .............................. CTATGTTTTTTATCTTTGTGTTTAATTCCTCTAC 2836067 30 100.0 37 NNNNNNNNNN .............................. CTGAAGCAAAAGAAAATACTAACACACCAGAAAGTAA 2836134 30 100.0 34 NNNNNNNNNN .............................. CCTAGTTGGGTTATTAATGCCTCCTTTTTCTTTT 2836198 30 100.0 37 NNNNNNNNNN .............................. GCTTATAGTCAAGGAAAATCCGTACTTAGAAAAGAGG 2836265 30 100.0 37 NNNNNNNNNN .............................. CCAGTACCGCCTGTATTAAATGCTATTTTACCTTCTG 2836332 30 100.0 37 NNNNNNNNNN .............................. GATTTAATCCATTGTTTTAGTGTCAATTCATCTTTAG 2836399 30 100.0 36 NNNNNNNNNN .............................. ATTTCCAGAGTGGAAAACAGCAGACATAATTATACC 2836465 30 100.0 36 NNNNNNNNNN .............................. CTTCCTCACCTATAATAGTTACTATGGGGTCTATGC 2836531 30 100.0 36 NNNNNNNNNN .............................. GTACAAAAACTTCCTTCTCGCAGAGGTCACCCTCTA 2836597 30 100.0 35 NNNNNNNNNN .............................. TAAATAGTAAAAATTATAAAAATTGAATACGTTCA 2836662 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 25 30 35 ATTTAAATACAATTCTTGTTAAGATTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:80.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [441,200] Score: 0.18/0.18 # # Final direction: R [0.18,0.41 Confidence: MEDIUM] >NC_009706 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 3578641 30 80.0 36 TTTGTATAAC ....T......GCC...A.....G...... AGATGTTAAATTCGAATATGAAACTTTTGTAGAAGA 3578707 30 93.3 35 TTGTAGAAGA .................A.....G...... GCAAAACTAAGAAGGTACAGTATGGAAAATGAAAT 3578772 30 96.7 36 AAAATGAAAT .......................G...... TGCTACCAAAGATGAAATATCTAATGCTGGTTATGG 3578838 30 96.7 37 CTGGTTATGG .......................G...... GGATGTTGACATAAAAAACCTTCAAACTTCTACAGGG 3578905 30 96.7 38 TTCTACAGGG .......................G...... TGGAGACTTGATGTGTTCAATTCTCATGGAAAGATATA 3578973 30 96.7 36 GAAAGATATA .......................G...... TAGACTTATTTATACCTAAAGACATTGCTAAATCAC 3579039 30 96.7 35 GCTAAATCAC .......................G...... AGAAATTGGCTTAATACTATAGATTATAAAGTATA 3579104 30 96.7 38 ATAAAGTATA .......................G...... AAGAATACTGATACTTCTGCTAATCAATTTTACATCTA 3579172 30 96.7 36 TTTACATCTA .......................G...... TAAAAAGCTTTTTTACTTTACCAATAACTTTAGGTA 3579238 30 100.0 35 ACTTTAGGTA .............................. ATAGATGATTTTATTAATTCTCAAGGTTTTATTTA 3579303 30 100.0 36 GTTTTATTTA .............................. AATGCAACAACATCTGTAATGGTCTTTCTTTGCCAT 3579369 30 100.0 36 TCTTTGCCAT .............................. GGTAATTCAGTTTCTACAACTCCACATTCTTTTATA 3579435 30 100.0 35 TTCTTTTATA .............................. TTAAAGTTAAGCACAAGAGAACTTGCAAAAAAAGC 3579500 30 100.0 35 CAAAAAAAGC .............................. GTGCATCAAACTTATTATCAGGTATCCATAGGTCA 3579565 30 100.0 36 CCATAGGTCA .............................. ATGGCTTTCCATGGGACTCCAAACAGTTTTGCTGTT 3579631 30 100.0 36 TTTTGCTGTT .............................. AAGCCTACAAGAAAAGAAAGACGATACCCCACAAGA 3579697 30 100.0 34 CCCCACAAGA .............................. TTTGGAAATTATATAATTTAGGGAGGAAATTAAA 3579761 30 100.0 36 GGAAATTAAA .............................. ATGAAAATGCTCATAAGATTAGTTGTACCAACAGTT 3579827 30 100.0 ACCAACAGTT .............................. TAATGTAAAA ========== ====== ====== ====== ========== ============================== 19 30 35 ATTTAAATACAAATCTTGTTAAGTTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:80.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [76.7-78.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [536,967] Score: 0/0.18 # # Final direction: R [0,0.41 Confidence: MEDIUM] >NC_009714 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 350603 30 100.0 36 NNNNNNNNNN G...TT.ATAC...A.......G....... ACAATAGGAATATTAAAAGAGCTGATAAAATCCTTT 350669 30 100.0 42 NNNNNNNNNN .............................. TTGCAAGAAATGCTGCCTTGGTAAAGAAAACACAATTAATAC 350741 30 100.0 36 NNNNNNNNNN .G..TC.ATAC.G................. AGAAAAAACACACGACCGCGCTTGCATTAATATCTT 350807 30 100.0 34 NNNNNNNNNN G............................. CAAATATACTTAAAAACGGACTTTTAACTCCCTA 350871 30 100.0 36 NNNNNNNNNN .............................. TTGCGGTGTATTTCTCCAATATTTCAGCACCTTTGC 350937 30 100.0 36 NNNNNNNNNN .............................. CAAAGGATTAAAAGGAAAAAGGAGCGGGCTATTTTA 351003 30 100.0 36 NNNNNNNNNN .............................. TATGCAGCAAAAAGAGATAAATCTTGTCGCAAAGCT 351069 30 100.0 36 NNNNNNNNNN .............................. CCTTAATGAAATAAACGACCTTATAAATGTAAATGA 351135 30 100.0 36 NNNNNNNNNN .............................. AAAGCGCGCTTGAGATTTTAAAAATGCATAAAAAGA 351201 30 100.0 36 NNNNNNNNNN .............................. AAACGGTGGCGATAATATAGCGCTTGGAAGAGCAAG 351267 30 100.0 36 NNNNNNNNNN .............................. AGAAAAATTAGGATTTTATAAACTTGATAAAACCAT 351333 30 100.0 36 NNNNNNNNNN .............................. GATAGTAGCATAATCGTTAAAGTATGCGCTATTACA 351399 30 100.0 36 NNNNNNNNNN .............................. TTCACAAGAAAGACTAAAATCATACTCATTACAAGA 351465 30 100.0 36 NNNNNNNNNN .............................. AACAAAATTTTACGATTTAGATACTTTAATATTAAG 351531 30 100.0 36 NNNNNNNNNN .............................. TAAAAAACTTTGGGACGATTTAAACGTGCGAATAAA 351597 30 100.0 36 NNNNNNNNNN .............................. AAGGTGTATTGAATACACTAATTTACAGGATATGTT 351663 30 100.0 35 NNNNNNNNNN .............................. AAAGGTGGTGGAAGATTTGCAGCTAATACATTAGC 351728 30 100.0 35 NNNNNNNNNN .............................. AATATGCAGGATTAAGTCCCAAAGTTTTTGCAAGT 351793 30 100.0 35 NNNNNNNNNN .............................. ATACCGAAACGGTAAGCAATTATAAGAATAACAGA 351858 30 100.0 36 NNNNNNNNNN .............................. TACTGTATATTATACTTGTGGATTGTGGGCGTATAG 351924 30 100.0 36 NNNNNNNNNN .............................. TTGATAAAGCTGTTATTAAGATATTGTGTCGCCGTT 351990 30 100.0 36 NNNNNNNNNN .............................. CAGGGCTTTTTTGGGAGAAATTAACAAAATTACGGG 352056 30 100.0 36 NNNNNNNNNN .............................. CAGGGCTTTTTTGGGAGAAATTAACAAAATTACGGG 352122 30 100.0 36 NNNNNNNNNN .............................. AAAAAACATAAAAGGGAAGTTTGTGCTCAGTTACAA 352188 30 100.0 36 NNNNNNNNNN .............................. CACTTAAAGATGAGGGCTTTGGAATAAGTTTCGTAG 352254 30 100.0 35 NNNNNNNNNN .............................. TGCTATAGGTGGTAAATTGGACGTTACTCCGTTTA 352319 30 100.0 36 NNNNNNNNNN .............................. CACTTAAAGATGAGGGCTTTGGAATAAGTTTCGTAG 352385 30 100.0 38 NNNNNNNNNN .............................. AATAAATTTTATCTTCATTAAGAGTTGTTTTAACATTA 352453 30 100.0 36 NNNNNNNNNN .............................. GCTCTTCCAGTTTTGCTTCGCAGATATCGGCTCTTT 352519 30 100.0 36 NNNNNNNNNN .............................. CATTTATTTTAATGTATATTTCGGCGCCAAACTTGA 352585 30 100.0 36 NNNNNNNNNN .............................. ACTTGGTTTATGACACTTTGCAAGATGAAAACACTT 352651 30 100.0 36 NNNNNNNNNN .............................. TAATGATTTATTTAATTATGTATCTAATTTAAAAAC 352717 30 100.0 36 NNNNNNNNNN .............................. ATAATTTTTCTATTTTTTTATCTTTCTTATTTTCGT 352783 30 100.0 36 NNNNNNNNNN .............................. ATAAAAATGATGATTTTATCAAGGCGCCAAAGCCAC 352849 30 100.0 36 NNNNNNNNNN .............................. AAAAAATGAGCCTTGGGAATTAAATAAACTTTATGA 352915 30 100.0 35 NNNNNNNNNN .............................. AATAAAAAATTAAGTTTTTTATAAACTATAATTTT 352980 30 100.0 37 NNNNNNNNNN .............................. GCGAAATGAGCCTTGCAGAAAGAGCGATTTTATATAA 353047 30 100.0 34 NNNNNNNNNN .............................. CTGAAAAAATAACAAATAATGTATTGAATGAAGA 353111 30 100.0 33 NNNNNNNNNN .............................. GCTCCTTTATCTCCGGCATTTGCTATTATTTGC 353174 30 100.0 35 NNNNNNNNNN .............................. CTATTTTTGTGTCTGAGGGCTTGCCGTATAAATAA 353239 30 100.0 35 NNNNNNNNNN .............................. CTATTTTTGTGTCTGAGGGCTTGCCGTATAAATAA 353304 30 100.0 36 NNNNNNNNNN .............................. CTTTAAGCGCCATTAATTCAAAACTCACATTGTCTA 353370 30 100.0 35 NNNNNNNNNN .............................. TTTGGGACTTAATCCTGCATATTTAACGGGGTATA 353435 30 100.0 35 NNNNNNNNNN .............................. TTGAATGTCCTAATATAAAGAAAGAACTAGAAAAA 353500 30 100.0 36 NNNNNNNNNN .............................. TGTGCCGGACATGATAGAAAAAAATGGACGCGCTTA 353566 30 100.0 35 NNNNNNNNNN .............................. TTCAAAGGAACTTTTAGGAAAAATCGAAGAGTTGG 353631 30 100.0 34 NNNNNNNNNN .............................. TATATGAAGATATAAAAAATAAGTTTTTGGAAAT 353695 30 100.0 37 NNNNNNNNNN .............................. CTTTAAATTTTAAAACTTCAGTTGAAAAATTGGATAA 353762 30 100.0 36 NNNNNNNNNN .............................. TAAAGGTTACCACGATTTCGTAATTTTCGGGCTTGA 353828 30 100.0 37 NNNNNNNNNN .............................. ATGTGCTAGTAAAAATACTAGGAGCAGAAAAACTAAT 353895 30 100.0 34 NNNNNNNNNN .............................. CCGCCGCCATTTTTTATTCCTTTAAAATTTTAAA 353959 30 100.0 38 NNNNNNNNNN .............................. ACTACAGAAATGGTTTTTAATCGTTATGTTAAATTTAT 354027 30 100.0 37 NNNNNNNNNN .............................. TTTATTTTCCTATAAACCCAAACAGGAACAGCCATTT 354094 30 100.0 38 NNNNNNNNNN .............................. GCTTACAAGTAAATTTATAAACATTTTTTTCATCACTT 354162 30 100.0 35 NNNNNNNNNN .............................. TTTATGGGTATTTTGGAATTAATGAAAAAATATAT 354227 30 100.0 37 NNNNNNNNNN .............................. GCGAGTTAGTTAATTATATCTCAGGTGGCGTTGAAAC 354294 30 100.0 34 NNNNNNNNNN .............................. CGATAACAAATCCGAAGTGGCAGGAAGCCATGAA 354358 30 100.0 37 NNNNNNNNNN .............................. GAATGTGTATAGGTGTGGATAACGAGGGTACATTTGG 354425 30 100.0 35 NNNNNNNNNN .............................. GAGTAAAGAGTTATGATCTGTCCGTATTGCGCGAA 354490 30 100.0 37 NNNNNNNNNN .............................. GTTGCTTCTTTTTCGTAGTCTTTCGGATTTTTAAAGC 354557 30 100.0 36 NNNNNNNNNN .............................. TTTAATAATACCGCAAAGCCGTATTTAGCGGCTAAA 354623 30 100.0 37 NNNNNNNNNN .............................. CAAAAATAGAAAAAACAAAAATTTGGGCTACTAGAAG 354690 30 100.0 36 NNNNNNNNNN .............................. AGCTTTAAAAGGCGATTTCAGCACCTTTGAAGCTAT 354756 30 100.0 37 NNNNNNNNNN .............................. TCGTGCAAGTATCAATTATTTTTCCATCAACTTCTTT 354823 30 100.0 36 NNNNNNNNNN .............................. AATGCTTGAATTAAAAGGTTTAAAACTTTTAAAGGG 354889 30 100.0 36 NNNNNNNNNN .............................. CGCTTTTATAAACTTTACCATCTTTAGAATTATAAG 354955 30 100.0 36 NNNNNNNNNN .............................. TTTATAAAATAAGCGCAGTTAAAAAATAATGTTTAA 355021 30 100.0 36 NNNNNNNNNN .............................. ACTTTTATAGAAGCTGCGAGGATATTTTGGAAAGCT 355087 30 100.0 35 NNNNNNNNNN .............................. TTAAATAGAAAATTTTTCCCTTTATCAATAATAAA 355152 30 100.0 35 NNNNNNNNNN .............................. ACCGGGCTTAAAGACAAAAATGGAAATGAAATCTA 355217 30 100.0 36 NNNNNNNNNN .............................. AAAAATGCGTGAATGTTATGTTTCTCTGTCTTTCGA 355283 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 72 30 35 ATTTCAATACAAAATTTGTTATAGCAAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:83.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [77,227] Score: 0.18/0.18 # # Final direction: R [0,5.36 Confidence: HIGH] >NC_009708 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2726751 28 100.0 32 NNNNNNNNNN ..AT.GG..................... AGCTCTCGTCTCCCTGGCCGTCCAGCGTGTAA 2726811 28 100.0 32 NNNNNNNNNN ............................ CCGTGGACATTGCAAGCACTGCGGCTGTGCTT 2726871 28 100.0 32 NNNNNNNNNN ............................ GAAGTGCTGGCCAAGACCACCCAGATATTCGA 2726931 28 100.0 32 NNNNNNNNNN ............................ GAAAAGTATCGCTATGCCATCAACAATTTTAA 2726991 28 100.0 32 NNNNNNNNNN ............................ TTGAGTTATTTAAAAGATCTTATGAATTTACA 2727051 28 100.0 32 NNNNNNNNNN ............................ ATAATTAATTGTTGTGCTTCATCCAACGTGTC 2727111 28 100.0 32 NNNNNNNNNN ............................ AAGTCCAGGAATTAAAAGCCGAGGTAGAAGAT 2727171 28 100.0 32 NNNNNNNNNN ............................ GCTAGAAATTTAAGAACACATGTACCCTATCA 2727231 28 100.0 32 NNNNNNNNNN ............................ TGGAAAGAACACACGTTACTGATGATTGGAAT 2727291 28 100.0 32 NNNNNNNNNN ............................ AACAATCAGGTTTACGTGATTGAACTCCGCAA 2727351 28 100.0 32 NNNNNNNNNN ............................ CTGGCGTGATAGATGGATTGATTGATATCAAT 2727411 28 100.0 32 NNNNNNNNNN ............................ ATTGGTGAGACCATCAGCAGGAATGCTACTCA 2727471 28 100.0 32 NNNNNNNNNN ............................ TCGGTGTTTTCGTTGTAATGCTTCTCGGTATA 2727531 28 100.0 32 NNNNNNNNNN ............................ AGATGGCCTGATTGACCGCCTGCGTCATATCG 2727591 28 100.0 32 NNNNNNNNNN ............................ TACCATCATCGGCCTCGGAAGTTACTGTGTTA 2727651 28 100.0 32 NNNNNNNNNN ............................ TACAGGCGCACACAGGCCGCCGCTAAATCACA 2727711 28 100.0 32 NNNNNNNNNN ............................ TAACAACGAACGCAAGCGGAAATCCGGCTGGG 2727771 28 100.0 32 NNNNNNNNNN ............................ AAAAAGCACCGTATAATCATCCGAAGGTTGAC 2727831 28 100.0 32 NNNNNNNNNN ............................ CTTGCCCGTTACCACTAACCATTATTTCAATT 2727891 28 100.0 32 NNNNNNNNNN ............................ ATATCCTCCTGATGCCACATCCGCTATTTTCT 2727951 28 100.0 32 NNNNNNNNNN ............................ ATAGCATGACGGATATGACATTGATTCCAACC 2728011 28 100.0 32 NNNNNNNNNN ............................ ACTGTACGGACTGGAGGAAGGCTTGGACGTTA 2728071 28 100.0 32 NNNNNNNNNN ............................ ACCAGTAGCCCTTTAAAGGCATCTTTACCGAT 2728131 28 100.0 32 NNNNNNNNNN ............................ TCAACAACAGTACCCGACAAAATGCCGGGAAA 2728191 28 100.0 32 NNNNNNNNNN ............................ GATGACGAGATGGCGCGGCTGGCTAAGTCAGT 2728251 28 100.0 32 NNNNNNNNNN ............................ AGATGGTCAGTAAATTACCTTTCATTCCGCTA 2728311 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 27 28 32 TTTCTAAGCTGCCTGTGCGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [36,497] Score: 0.18/0.18 # # Final direction: R [0,1.33 Confidence: HIGH] >NC_009715 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 870978 30 96.7 37 TTAACCTGCG ....................A......... ACAAACTCCTGATGTTATGTAAACATTTTAATAAATT 871045 30 100.0 36 TTAATAAATT .............................. TTTGAATTCGTTTTTGCTTAAAACTATAAGCCTTTT 871111 30 100.0 37 TAAGCCTTTT .............................. GCCGTTTTAATCTCGTTTTGAGACGCCTCTATGCGGG 871178 30 100.0 36 TCTATGCGGG .............................. TAAAGAGCCTATCCCGCCGTGGGAGTGGAGGAAAAG 871244 30 100.0 36 GGAGGAAAAG .............................. CGTTATTATCCAGCCACTCGATCGTTGGCTGACCGC 871310 30 100.0 36 GGCTGACCGC .............................. ATCGGTGCCGTTTATTATGTCGCTCTTGCCCTCGAC 871376 30 100.0 37 TGCCCTCGAC .............................. CAAATCATCGGGCCTAAATACGCAAAGGTCAATGAAC 871443 30 100.0 36 GTCAATGAAC .............................. TCGATAAGGTGTTTGTTTTTGGACTGGGAATAAAAA 871509 30 100.0 GGAATAAAAA .............................. AGCGCATAAA ========== ====== ====== ====== ========== ============================== 9 30 36 GTTTCAAATTCCAACGGAATGATCTTTAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [50,173] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_009715 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 878265 30 100.0 38 TAGGATATAG .............................. CAGGTAGAATTCAAGCTTACTATAACTGAAACCAATCT 878333 30 100.0 34 AAACCAATCT .............................. AACTCGACGAGCTTGCTGCGTGGTATGTCAAACA 878397 30 100.0 ATGTCAAACA .............................. AGCACCAAAA ========== ====== ====== ====== ========== ============================== 3 30 36 GTTTCAAATTCCAACGGAATAAATTTTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:73.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.20,-2.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [534,483] Score: 0/0.18 # # Final direction: R [0,0.37 Confidence: MEDIUM] >NC_009718 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1019473 30 100.0 37 NNNNNNNNNN .............................. GAAGAACAACTTAAGCAGTTTTTCACCAGATAGCAGG 1019540 30 100.0 38 NNNNNNNNNN .............................. AATTGAAATCCAGACGGATAACCCTTAGATTTGACCCA 1019608 30 100.0 35 NNNNNNNNNN .............................. CGTGCATATGGTGTTGATTCGAGAAAGATTTTTGC 1019673 30 100.0 37 NNNNNNNNNN .............................. GTGGATGTGGCTTATCTTCGTCAAATGGATGTTTTTC 1019740 30 100.0 35 NNNNNNNNNN .............................. TTGACAAACACAAGCTTGAGGCACCATACTATTTA 1019805 30 100.0 36 NNNNNNNNNN .............................. GAAGTTGCTCAAGTTCACCCTGATAATTTTTGAATA 1019871 30 100.0 35 NNNNNNNNNN .............................. GCAAAATGCACTGTTTTTTACACACGCGCTTCGAC 1019936 30 100.0 39 NNNNNNNNNN .............................. GAAGCAATACTGATTTTTCAATTACTGGCTCTTTAGCCG 1020005 30 100.0 37 NNNNNNNNNN .............................. ATGGCAATAGGTAATCAGCTCTACAACTGGAACCTCG 1020072 30 100.0 35 NNNNNNNNNN .............................. AAGTATGAAGACGAAGACGCTGGTTAATGGTGTTG 1020137 30 100.0 35 NNNNNNNNNN .............................. TTATACCCGCCGTTGTAGTTCTTTTGGTATCCTTG 1020202 30 100.0 37 NNNNNNNNNN .............................. CCAATCATCGGACACGCAGATGGAATAGTCTTCGTAG 1020269 30 100.0 38 NNNNNNNNNN .............................. TGAGCTTGCAAGACTCACAGCCCAAGCAAACAATACAC 1020337 30 100.0 38 NNNNNNNNNN .............................. TACCACCAAACGCGGTATACGTCTTGGTCTAAAAATTT 1020405 30 100.0 35 NNNNNNNNNN .............................. GGTGCTATCTTTTTAAATCCATACAGCAATTTTGC 1020470 30 100.0 37 NNNNNNNNNN .............................. ATTTTTACCTCCTTCAGAACCTCTGTTTCTGATTCTG 1020537 30 100.0 35 NNNNNNNNNN .............................. TATTTTTCTAAAAACTGCAACAAAGCACCAACTTC 1020602 30 100.0 35 NNNNNNNNNN .............................. CCAGCTCATATTCTTGTTCTTCATCGGCTCTCTGA 1020667 30 100.0 37 NNNNNNNNNN .............................. GCTGGTTCGTGAAGTTTGCCATTAACAATGGTTCTTT 1020734 30 100.0 35 NNNNNNNNNN .............................. GTGCTCACCATGGTAATTCTCCTCGGGGTGACACC 1020799 30 100.0 34 NNNNNNNNNN .............................. TAATAAAATTCTAAGCCAAAATCTGTGTTGTTGT 1020863 30 100.0 37 NNNNNNNNNN .............................. AGAGGCTTGACGAACTTCTTACTTCTGATACTAAACA 1020930 30 100.0 34 NNNNNNNNNN .............................. CAAAAAAAGCTAATTGACAAAAACAGAAGTTGTG 1020994 30 100.0 35 NNNNNNNNNN .............................. GAAGCATCGTCTATGAGCTTGAAACACTTTCGTTG 1021059 30 100.0 36 NNNNNNNNNN .............................. AATCTATAGCAAACCACATAGAATCGCAGCCGTAAT 1021125 30 100.0 35 NNNNNNNNNN .............................. CGCAGCTTCTCTTCTCTTGTCTTGAGTGCCTGTGT 1021190 30 100.0 35 NNNNNNNNNN .............................. CAGGTGTGTCTTAACTCAAACTCTTCGTCGTTTGA 1021255 30 100.0 39 NNNNNNNNNN .............................. TTCGAAACACTTTTGGTGCTACTTGCTCTGTTGGACAAC 1021324 30 100.0 35 NNNNNNNNNN .............................. TTCTGCAAGTAAAAGTTTAGAAGTTGCTCAAGTTC 1021389 30 100.0 37 NNNNNNNNNN .............................. TCGATAGCGTAGGCTTGGCTGCAGGTGGTGGGATTGA 1021456 30 100.0 35 NNNNNNNNNN .............................. ATTTTAGTATTGAACTCATGAGGTTAGAAGGTGAG 1021521 30 100.0 38 NNNNNNNNNN .............................. CCAACGCTAACGCGAGTTGCCCCTCCCCGCGTTTGAAT 1021589 30 100.0 36 NNNNNNNNNN .............................. GGATTGCTGACGTGCTCACAAAAGGTGCTTTTTCTG 1021655 30 100.0 34 NNNNNNNNNN .............................. AAAGCTCTAACAGAACTCTATAAAGCAGCTACAA 1021719 30 100.0 38 NNNNNNNNNN .............................. CATGCAGAAAGGAGAGTGAGGGGAATGAGATTGCCAGA 1021787 30 100.0 35 NNNNNNNNNN .............................. AAAAAAATTTACATCAGCGTAATCAAATTTTGTGA 1021852 30 100.0 38 NNNNNNNNNN .............................. CAACTGTAGCTGGTGGTCTAAAGGTTTGGCGTTCATTG 1021920 30 100.0 36 NNNNNNNNNN .............................. TTCTGCTTATGGTGCAGAGTATTTTGATGGGGTATC 1021986 30 100.0 38 NNNNNNNNNN .............................. AGAAAAGAAAATTCGTTAAGCCAGCCAGGAGGCTGGGA 1022054 30 100.0 35 NNNNNNNNNN .............................. CAGAGAGAAAAGTATTTCAAAGGAGGTGTTTGTAT 1022119 30 100.0 36 NNNNNNNNNN .............................. ACGACGTCAACACCAGAGAATGAAAGAAGAATCATT 1022185 30 100.0 35 NNNNNNNNNN .............................. TATGAAGCTGGTGAAAATTCATTGTTAACTTTACG 1022250 30 100.0 37 NNNNNNNNNN .............................. TACGGTTCTCTCGTGATATCCAAGACGATAAAAACTG 1022317 30 100.0 38 NNNNNNNNNN .............................. AGTTGTGTTGCTTCAAAATCTCAACTAGTCTGTCTTCA 1022385 30 100.0 36 NNNNNNNNNN .............................. ATTGTTTCGCTGGGGGAGGGGTCCCAGCACACGCTG 1022451 30 100.0 37 NNNNNNNNNN .............................. CGCACAAGTTCAGTACTTCATCTCGCGTCATGTATTC 1022518 30 100.0 36 NNNNNNNNNN .............................. TGGATATTTTTGTGTCTGGCTTGGCTGCACTCTTTG 1022584 30 100.0 38 NNNNNNNNNN .............................. TTCTCCCATCGTATGTTTTCAGAGAGAGGATATGCTTA 1022652 30 100.0 35 NNNNNNNNNN .............................. TTAAATTGGAAGACAAGCAAAACATCCTTTTTAAA 1022717 30 100.0 39 NNNNNNNNNN .............................. AAAAGACAAATAAAGCCAAGCGTCGAGCCATACTTTCTG 1022786 30 100.0 35 NNNNNNNNNN .............................. GATGTTCGCTGGGGGAGGGGTCCCAGCGTATGCTG 1022851 30 100.0 35 NNNNNNNNNN .............................. TTGTCAATATATATAAGTGCATCAAACCCACGAAG 1022916 30 100.0 36 NNNNNNNNNN .............................. ACTTTCGGGGTATATATCCCAGTATGCACCTACACT 1022982 30 100.0 36 NNNNNNNNNN .............................. ATTGTTTTGGGATTTTCAAGTGTGTTTTTTGCTGTG 1023048 30 100.0 36 NNNNNNNNNN .............................. GAACAAAACCAATGTCAACGAATCTCGCAATTTTCA 1023114 30 100.0 37 NNNNNNNNNN .............................. TTTAATCAAACCCACGATCAAACCCACGCAGTATCTG 1023181 30 100.0 34 NNNNNNNNNN .............................. GTGGATGCGTACAACGTTTTGATTGCGAATGGCT 1023245 30 100.0 34 NNNNNNNNNN .............................. GAAATAATATCGACTGAAACGCCATGCATTGTAG 1023309 30 100.0 35 NNNNNNNNNN .............................. CAACGATTGTTACGCCTATGATGATTGCTGCGACG 1023374 30 100.0 37 NNNNNNNNNN .............................. TTAAGCCGGCCAGGAGGCTTGGAGACAGAGTCTCCGG 1023441 30 100.0 36 NNNNNNNNNN .............................. TGGTAATAAAATGTTTTGTTAATGTCGGACGTCTTA 1023507 30 100.0 35 NNNNNNNNNN .............................. CCCATGCTAGCGAATTTGAGCCGTATATGGTTGAA 1023572 30 100.0 37 NNNNNNNNNN .............................. GTATCAGACGAAACAGATAACCAGCAAGCAGTACTTG 1023639 30 100.0 35 NNNNNNNNNN .............................. GACAGCAGTATTTCTAACAACTTGAAGCGATATAC 1023704 30 100.0 39 NNNNNNNNNN .............................. TGGATGAGTACTGGAAATTCCAGTGCGATATGCCAGAAG 1023773 30 100.0 34 NNNNNNNNNN .............................. AGAATGTTCACATCGTCTTGCTCTTTCTGGAAAA 1023837 30 100.0 36 NNNNNNNNNN .............................. CTCTTTCTGGAAAAATTCTTTATACAGCCAATGTCT 1023903 30 100.0 35 NNNNNNNNNN .............................. TCCAGAAAGTCTAACACTTTCGAAATTTCATTTTC 1023968 30 100.0 37 NNNNNNNNNN .............................. GTCTTTGGGACCGGGGGTATTCTTTGTATTCGAAATA 1024035 30 100.0 37 NNNNNNNNNN .............................. TCGATAGCGTAGGCTTGGCTGCAGGTGGTGGGATTGA 1024102 30 100.0 37 NNNNNNNNNN .............................. GGGAACCACTCCGCAAGAAATTCAGCAGTTCCCCAAC 1024169 30 100.0 37 NNNNNNNNNN .............................. GCGTTTTGCAAGGTGCGATTGGTACTGTACTTTCTGT 1024236 30 100.0 35 NNNNNNNNNN .............................. AAAGATATACATTTTTTTTGTGACTTGTGGGACGA 1024301 30 100.0 35 NNNNNNNNNN .............................. TTCGACGAGGTGCGAAGAGAAATCGAGCTCCGGAA 1024366 30 100.0 38 NNNNNNNNNN .............................. ATGGAACGAATAATGGAATATAAGGGTCACGTATATTT 1024434 30 100.0 37 NNNNNNNNNN .............................. TTATGTGTGTCACATTTGGCTAGGTATATCAAACATA 1024501 30 100.0 34 NNNNNNNNNN .............................. TTGACTTTGTTACAACTACTGGTATTTTCGAAAA 1024565 30 100.0 37 NNNNNNNNNN .............................. CCATCTTCACCTAGTTTAACAATCTCAACAGACATCT 1024632 30 100.0 44 NNNNNNNNNN .............................. ACTACTTCTGTTCTGCCAAAGTATTGCGGATAGCGCCTTTCCAA 1024706 30 100.0 35 NNNNNNNNNN .............................. CAAAAAAGGGTAGAATTCACTATCACGTGATTCTG 1024771 30 100.0 38 NNNNNNNNNN .............................. CTTGATAATTCCTTTATCCCGGGCAGTTCATGATAACC 1024839 30 100.0 35 NNNNNNNNNN .............................. GTTGTTTTCGCTGGGGGAGGGGTCCCGCTGGGAGG 1024904 30 100.0 38 NNNNNNNNNN .............................. TAAAGTGGTTCAAAACAATGTCTATGAACTAATTCATG 1024972 30 100.0 36 NNNNNNNNNN .............................. CGTATTCTGGAGCTAGCTATCAGGGAAGTACAAACA 1025038 30 100.0 36 NNNNNNNNNN .............................. TAGGGTTGAATAATTGAATAATTGAGTAATTGCCCA 1025104 30 100.0 35 NNNNNNNNNN .............................. TTTTTTTGCCACTGGTAAAGGCTTTTCAACTAGCT 1025169 30 100.0 37 NNNNNNNNNN .............................. CCCTCTTTTCTATTTCTTCATTCGCTCCCAACTTTAC 1025236 30 100.0 37 NNNNNNNNNN .............................. GATTTGTGATGTTTATTGTTAATTCCATACTTGCAAT 1025303 30 100.0 36 NNNNNNNNNN .............................. GGCGATCGAGTTCCTCCGACGACAAGTCGGAAAGTA 1025369 30 100.0 37 NNNNNNNNNN .............................. AAGTGAAGATGAAAAAGTAAATATTTTTTGCTCTGCC 1025436 30 100.0 36 NNNNNNNNNN .............................. GCGAAAGATTCTACTATCACGGTGACTTTTACGCGT 1025502 30 100.0 35 NNNNNNNNNN .............................. GTGGGACGACTGATAACTTGAATAGTCGTGCCATA 1025567 30 100.0 37 NNNNNNNNNN .............................. ATAATCCAATTAACAATAAATGCGGACCAGAACGCTG 1025634 30 100.0 37 NNNNNNNNNN .............................. GTGAATACTGCAGTTGATTTGTCAGCGCTCTTTTCCC 1025701 30 100.0 37 NNNNNNNNNN .............................. CTTTGCGAAAATGTTACAAAAATTGAGTTTCAATCCC 1025768 30 100.0 34 NNNNNNNNNN .............................. CATATGCGATTCTTAGATTTGTGATGTTTATTGT 1025832 30 100.0 36 NNNNNNNNNN .............................. TTTTGCTTTTGTTAAAAAAAAGAAAAGAAAAGAAAA 1025898 30 100.0 36 NNNNNNNNNN .............................. GAGATAAGTATTGTTGGGGTGTGCTTCGTTGGTCGT 1025964 30 100.0 37 NNNNNNNNNN .............................. GCTTGATTCAAACCATTAGAAATAGTATTAGAAATAT 1026031 30 100.0 36 NNNNNNNNNN .............................. TATTGAATGGTTGTGACTACCAAGGCACGACCAACG 1026097 30 100.0 35 NNNNNNNNNN .............................. TATTGTGTCATTTGACGAATGGAAGTGATATTTTG 1026162 30 100.0 40 NNNNNNNNNN .............................. AGAAAATGAAGTTCGTAAAGCCAGCCAGGAGGCTTGGAGA 1026232 30 100.0 37 NNNNNNNNNN .............................. AAAGAAAAAATATAAGAAAAATGGAGGTGTGAATATA 1026299 30 100.0 37 NNNNNNNNNN .............................. CTTCTATATCGTCGAAGGTAAAAACTCTGTGTACAGA 1026366 30 100.0 35 NNNNNNNNNN .............................. ATTCCATACTTGCAATTGTCTGGAGAATGGGGGAA 1026431 30 100.0 40 NNNNNNNNNN .............................. TAACCGAATCCCCCTTTGGTTGTGGGACAAAGGATATCCT 1026501 30 100.0 36 NNNNNNNNNN .............................. TCATATTTTTTGATAAATTCAACCAAACTAGAAACC 1026567 30 100.0 37 NNNNNNNNNN .............................. TTCAAGTAATCGTCGTCCCACAAGTCAAAAAAAACTA 1026634 30 100.0 37 NNNNNNNNNN .............................. AGTATTGTTCCACGCTATCACGAGATTCCCCATATTA 1026701 30 100.0 35 NNNNNNNNNN .............................. TAGCGAACAACCCGAATGTTTTACAACGTATTTCA 1026766 30 100.0 36 NNNNNNNNNN .............................. GAAATATCACACTCAAAAATGTCAATACTTGTACCG 1026832 30 100.0 37 NNNNNNNNNN .............................. ATTGGGTGGTGGTTTGAATGATTACATACGCTATTCT 1026899 30 100.0 37 NNNNNNNNNN .............................. CTTTGCGCAAATGTTACAAAAATTGAGTTTTAATCCC 1026966 30 100.0 34 NNNNNNNNNN .............................. TTGGAGTAAAAGGTCACCAAAAATTGAAGTTACA 1027030 30 100.0 37 NNNNNNNNNN .............................. TCTACAATTTTCTCAATATTCCAACTATCAACAACAT 1027097 30 100.0 37 NNNNNNNNNN .............................. CTTCATCGATGAATACAATACCGTCACGCAATTTCTT 1027164 30 100.0 38 NNNNNNNNNN .............................. ATTCAATCAACTTAACCATACATATATCAACCTCACAT 1027232 30 100.0 35 NNNNNNNNNN .............................. GTATACCATATATTTTCACTTTTTGCATTGCGTTT 1027297 30 100.0 36 NNNNNNNNNN .............................. ATCTTTTCGGCTCTACTGTCGATCTTTCGGGGTATA 1027363 30 100.0 35 NNNNNNNNNN .............................. TATGTGGAATAAAAGAACGCCGGCAATTGAAGTTT 1027428 30 100.0 36 NNNNNNNNNN .............................. CGTATGACTCAAATACTGGTTCATGGAATACTGGCA 1027494 30 100.0 37 NNNNNNNNNN .............................. CAACGTATTTCGTAGCTCACGAGTTCTCTCAAAATCA 1027561 30 100.0 38 NNNNNNNNNN .............................. CTTTTTCGATGAACTCTCTGTACTCTAAGACTTTCTCA 1027629 30 100.0 37 NNNNNNNNNN .............................. TCCTTTGTCAATATCCAATATAATGCCATACATACTA 1027696 30 100.0 37 NNNNNNNNNN .............................. TTCGGTTAGGTGTACATAACATAATTAGGCAATCCTA 1027763 30 100.0 37 NNNNNNNNNN .............................. CAGGTTGTAACAAAAGCGTTTCACAAACGAAATGAAA 1027830 30 100.0 36 NNNNNNNNNN .............................. CTGGTGCAGCTGCACTTTCTACTTGGGCAAAGTTCG 1027896 30 100.0 35 NNNNNNNNNN .............................. TTTACATTATAGAAAGGGGGTGAATGTGAATGAAT 1027961 30 100.0 36 NNNNNNNNNN .............................. TTTTGAACGTTTTTAAATGCGCGATACGTCTGTTTT 1028027 30 100.0 36 NNNNNNNNNN .............................. CTTTGCGAAAATGTTACGAAAAAAGGCTTCAATCCC 1028093 30 100.0 34 NNNNNNNNNN .............................. TTGAAGGGGTTAATTCTGCGTGGAGGATTTATAC 1028157 30 100.0 36 NNNNNNNNNN .............................. TTTGATTTACCAAACCTCTATTTCTCATATTTCTTT 1028223 30 100.0 36 NNNNNNNNNN .............................. ATAGCAAGCTTTCTTCTTTGCAGAATGATATTGCAG 1028289 30 100.0 38 NNNNNNNNNN .............................. TTAAGAAATACCGACGCTTGTATTTCGACCACAAAAGA 1028357 30 100.0 37 NNNNNNNNNN .............................. TAAAGCCAGCCAGGAGGCTCGGAGACAGAGTCTCCGG 1028424 30 100.0 36 NNNNNNNNNN .............................. TCAAAAGCAAGGAAAGAGAAATTCAAGTGCAGGAAA 1028490 30 100.0 35 NNNNNNNNNN .............................. AAAAGGAGGAAAAAAACATGAGGTATATTGCAAAT 1028555 30 100.0 35 NNNNNNNNNN .............................. CAATAAAGTCAACAAGGAAACCAAGAAGGAAATCA 1028620 30 100.0 38 NNNNNNNNNN .............................. TAATGTTCCTTTTTTTAAAGATGAAGAGGGTAAACTAA 1028688 30 100.0 37 NNNNNNNNNN .............................. ATTCATAAGTGAGCAATTCAAATGTAACAAAATGTAA 1028755 30 100.0 37 NNNNNNNNNN .............................. ATGGACAAAAACAAAGGTTGTGTTATACTTGTAGTAG 1028822 30 100.0 36 NNNNNNNNNN .............................. TGGTATTGGCTTTTACTGGTAAGCCTGGAGCAGGCA 1028888 30 100.0 36 NNNNNNNNNN .............................. ATTCGATACTTGCGGTCGTTTGGAAGATGGGGGAAG 1028954 30 100.0 35 NNNNNNNNNN .............................. TGGATGTTTTTGTTTCGGGGCTTGCTGCTCTCTTT 1029019 30 100.0 35 NNNNNNNNNN .............................. TGTTTGTTTTGAACTCAATACTTGCAATTGTATGG 1029084 30 100.0 36 NNNNNNNNNN .............................. CAGATATGGTGAACATGGGCTACAATCTCGATTATA 1029150 30 100.0 37 NNNNNNNNNN .............................. GACGCTAACTCTTTTATTCCAGGGACCTCGTGGTACC 1029217 30 100.0 36 NNNNNNNNNN .............................. GTATTAAGAAGAGAAAATTTATTACCCCTCTAATTG 1029283 30 100.0 35 NNNNNNNNNN .............................. ACAGCTATTAGGGAACCACTCCGCTACGAACTCAG 1029348 30 100.0 34 NNNNNNNNNN .............................. GAGACATCGTACGATTTTTTAGGAAGAATTTTCG 1029412 30 100.0 34 NNNNNNNNNN .............................. TCAGCACTTTTTAACCAGGTACAAAGTGCTATCA 1029476 30 100.0 35 NNNNNNNNNN .............................. ACAAACAAGACAAAGGAAGTGGTGAAAGCAAATCA 1029541 30 100.0 39 NNNNNNNNNN .............................. GGCTGTCTTGACCGCTGGGGACCCCCTCCCAGCATACGC 1029610 30 100.0 37 NNNNNNNNNN .............................. GGTGTGCCAAATTCGGTTAGGTGTACATAACATAATA 1029677 30 100.0 34 NNNNNNNNNN .............................. ATACTAAACATAACCTGTTTTAACTTACGAATAT 1029741 30 100.0 37 NNNNNNNNNN .............................. AATTCTATTTCCGGATCTCCTTTACTCCACCTCAAAA 1029808 30 100.0 34 NNNNNNNNNN .............................. TACCACCACCAGCGGTATACGTCGCTACTTAAAA 1029872 30 100.0 36 NNNNNNNNNN .............................. CCAACTTGCGACATCATTTGTATGCCAAGAGTATCG 1029938 30 100.0 37 NNNNNNNNNN .............................. GACAAAGAAAAGGCGTTGAACGTGGCTTTGAACAAAC 1030005 30 100.0 35 NNNNNNNNNN ......................G....... TTCCATCTATAATAGCTAAATCTAATATATACACC 1030070 30 100.0 38 NNNNNNNNNN .............................. GGTGTGCCAAATTTGCTTAGGTGCGACTAGGCAAATGT 1030138 30 100.0 37 NNNNNNNNNN .............................. TTAATTTGTCTAATTCCTCGGGTGTTATCCCAAGGAG 1030205 30 100.0 37 NNNNNNNNNN .............................. TGATGAAGAGGTGGCTAAAGAACTGTTGAATTTTTTG 1030272 30 100.0 35 NNNNNNNNNN .............................. GTTGCTTTCGCTGGGGGAGGGGTCCCAGCGTATGC 1030337 30 100.0 37 NNNNNNNNNN .............................. GACCAAGACGTATACCACACATGGTGGCCTAACGTCA 1030404 30 100.0 37 NNNNNNNNNN .............................. GGTGTGCCAAATTCACTTATGCGCGACTAGGCAAATG 1030471 30 100.0 37 NNNNNNNNNN .............................. GGGAATATTTTTGGTTTACGAGTCGTTGGTACTTTTG 1030538 30 100.0 38 NNNNNNNNNN .............................. TTGGAATATCTCTTGGTACTTTGAGCTCTCCGATAACG 1030606 30 100.0 37 NNNNNNNNNN .............................. TTCATAAACGTAAATGCTCCACTATCTATTAGAAAGA 1030673 30 100.0 38 NNNNNNNNNN .............................. CAGCAAGTTCATTGACAAATTCAAAAACTGTAGTATAC 1030741 30 100.0 34 NNNNNNNNNN .............................. TTTCTTCACTTCGAGTACTTCTCCAGAAATTCAC 1030805 30 100.0 35 NNNNNNNNNN .............................. TGGATATGTTGCTCGAAAAACTTTCTATGATCACA 1030870 30 100.0 37 NNNNNNNNNN .............................. GAAATTTCACTACATCAATTTCTTCTTCGTAGGCCAA 1030937 30 100.0 35 NNNNNNNNNN .............................. TTGGGTGTTCTACAATCGCTATGGAATGGCAATTG 1031002 30 100.0 36 NNNNNNNNNN .............................. GAGCAATCAGACGCGGTGACGGTGAGCTCTCGCTAG 1031068 30 100.0 36 NNNNNNNNNN .............................. CAAACAAAGAGAAGTAACAGATGAATTACTTCAAAA 1031134 30 100.0 36 NNNNNNNNNN .............................. ATGGTTTATGAAGAAATTGATACAGAGGAATTTCTC 1031200 30 100.0 35 NNNNNNNNNN .............................. GCAAGTTTTTTAAAAAGTCTTACAACGGTAGTGAC 1031265 30 100.0 1 NNNNNNNNNN .T.....TTC.C..C..A.C.....A.... NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 179 30 36 GCTTTTAGCATACCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.80,-0.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [177,183] Score: 0/0.18 # # Final direction: F [5.28,0 Confidence: HIGH] >NC_009718 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1506355 30 100.0 35 GGATGGACGA .............................. AAAGATTTTTCGTTCCCTGTTGAAGTATGCTACTC 1506420 30 100.0 36 TATGCTACTC .............................. TTGCCAACGCTAATTTGTTATCACCATTCTTGAGTG 1506486 30 100.0 34 TTCTTGAGTG .............................. ATATCCGAAAGTTTTTGTAGCAGCTCGTCTGTCA 1506550 30 100.0 40 TCGTCTGTCA .............................. ACTTCCCTTTGTTCGCGAGAAACTTCTTCAAGAACTTCAA 1506620 30 100.0 43 AGAACTTCAA .............................. CAAAGTATCTTCTTTACCAACCATACCCAACACCTCCTCTTAG 1506693 30 100.0 41 CTCCTCTTAG .............................. GCCCTGGAGGCTTTGATGAGCTTGTCAATCTCTTCGGGTGT 1506764 30 100.0 39 CTTCGGGTGT .............................. CCTAAACCGGCCCCGCTTGTCTGCGGTCCAATCTATTTC 1506833 30 100.0 45 AATCTATTTC .............................. TTCTTTGACGATCTGAATCAGTTCCTCTGTGATAATAGAAAGTTT 1506908 30 100.0 41 TAGAAAGTTT .............................. TTGTTTGTTCCAATGAAAAGTAAACATCGACGACGTCTTCG 1506979 30 100.0 36 GACGTCTTCG .............................. AAAGTTCTGAACTCTCCCTTCCCAACGTTAATGTAA 1507045 30 100.0 42 GTTAATGTAA .............................. TTGTACCCCCCCTTTAACAAGCTTCTTACTTCCTTTAAAAAA 1507117 30 100.0 38 CTTTAAAAAA .............................. TTTAAAATTGCCTCATTTATAATTTTGTCTGGAACTGC 1507185 30 100.0 CTGGAACTGC .............................. TCACTCAATA ========== ====== ====== ====== ========== ============================== 13 30 39 GTTTTAGAAGTGACTATGAGGGATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [536,264] Score: 0.18/0.18 # # Final direction: F [0.18,0 Confidence: MEDIUM] >NC_009719 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 101247 36 100.0 30 NNNNNNNNNN .................................... CGGCGCAGTTCAGCATCCCCGCCAGCTTCG 101313 36 100.0 30 NNNNNNNNNN .................................... AGGCAGACACGTTCACTCAAAAGAGATTAC 101379 36 100.0 30 NNNNNNNNNN .................................... CAGAAGAGGCGGCGGGAATACGTTCGGCCC 101445 36 100.0 30 NNNNNNNNNN .................................... CGCCCAGCGTTCGTCTGTCTCTTGATCGGG 101511 36 100.0 30 NNNNNNNNNN .................................... GAAGCCCGGTGACGATCCCCAAGCCACCTC 101577 36 100.0 30 NNNNNNNNNN .................................... AATATCGAGTTTGGAGAGATCGACAAAGCC 101643 36 100.0 30 NNNNNNNNNN .................................... TCAGCACCTGCAGCAGCAACTTCGCCTCAT 101709 36 100.0 30 NNNNNNNNNN .................................... GAAGCCCGGTGACGATCCCCAAGCCACCTC 101775 36 100.0 30 NNNNNNNNNN .................................... AATATCGAGTTTGGAGAGATCGACAAAGCC 101841 36 100.0 30 NNNNNNNNNN .................................... TCAGCACCTGCAGCAGCAACTTCGCCTCAT 101907 36 100.0 30 NNNNNNNNNN .................................... CTTGCACGACCGGCATGTGAGCGCGCACCC 101973 36 100.0 30 NNNNNNNNNN .................................... CGCCGTAATGCGAGGCCCAATCGTGGACCG 102039 36 100.0 30 NNNNNNNNNN .................................... TTAGCTTCGTCTGCGGAAAGCCCCGCCGCT 102105 36 100.0 30 NNNNNNNNNN .................................... TGCGGCCAATACCGAGAAGCATTCCGGCTC 102171 36 100.0 30 NNNNNNNNNN .................................... TCCGCCCACGGCTCCTATCACGGCTCTCTG 102237 36 100.0 30 NNNNNNNNNN .................................... TAGCGCGGAAAACGATGGATCGGCGGCACT 102303 36 100.0 30 NNNNNNNNNN .................................... CCGCGAGGACGTGGCCGCCTATGCCGCGGC 102369 36 100.0 30 NNNNNNNNNN .................................... TTCACCCTCTCCGCACAGAACAACACCCTG 102435 36 100.0 30 NNNNNNNNNN .................................... GCGGCTCGCAGACCAAGCGAACGGCGTTCC 102501 36 100.0 30 NNNNNNNNNN .................................... AGGCGCGGCGATGGAAGCTTTCGTGTCGTC 102567 36 100.0 30 NNNNNNNNNN .................................... GGTGCGCGACAGATAGCCGATATCGCGGCC 102633 36 100.0 30 NNNNNNNNNN .................................... CTTGAGGATGTTCTGAAGCCGGAATACTGG 102699 36 100.0 30 NNNNNNNNNN .................................... CGCCCTAGAGGCTTTGACCGCGATACAGGG 102765 36 100.0 30 NNNNNNNNNN .................................... CGTGAACAAGCAGAGGGCTTCGGCTTTCTC 102831 36 100.0 30 NNNNNNNNNN .................................... CCGCTTCCGTATCGCTTCAATCTCTTCGGC 102897 36 100.0 30 NNNNNNNNNN .................................... GAGCGCCACGGTCTGCCCCTCCGCGACAAG 102963 36 100.0 30 NNNNNNNNNN .................................... GCGTCACCTCGCGCATCCCCGCGAGCCCTC 103029 36 100.0 31 NNNNNNNNNN .................................... TGAGCGTGAGTGTCGCTCTTGTACTCGCGGC 103096 36 100.0 30 NNNNNNNNNN .................................... CCAGCGTTTGAACGCTTGCGACGGATGACG 103162 36 100.0 30 NNNNNNNNNN .................................... CCCGCTCCGCACGTTGGCGGACGTAACCGC 103228 36 100.0 30 NNNNNNNNNN .................................... GCGCACACTCGCGCATGCCCTGATGCGGCA 103294 36 100.0 30 NNNNNNNNNN .................................... CGAGCTTGAAGAAACCCTCGGCGAGGCAGG 103360 36 100.0 30 NNNNNNNNNN .................................... CCTACCTCGGTGTGTCGGATAACCCGACAC 103426 36 100.0 30 NNNNNNNNNN .................................... CTTCCTGAAGGATCAGTAATTACTTGTAAG 103492 36 100.0 30 NNNNNNNNNN .................................... GCTGGTTGCGGAGATTGCATCGGAGCAGGC 103558 36 100.0 30 NNNNNNNNNN .................................... GTCCCTCAAGCGAGACATAGCGGCTGGTAC 103624 36 100.0 30 NNNNNNNNNN .................................... CGACTCAACATTGCCTGCTCACTCTTTATG 103690 36 100.0 30 NNNNNNNNNN .................................... CGGCCACCATGCCGCCATCGCCCTGGTGCC 103756 36 100.0 30 NNNNNNNNNN .................................... GGTCACTTGCGACATTGACCACCTAGACGC 103822 36 100.0 30 NNNNNNNNNN .................................... TCTCTGCATCCTTGAGGATCATCGCCTCAT 103888 36 100.0 30 NNNNNNNNNN .................................... CGGACGCCCGGATGGCGAGCAGCGTGTCGC 103954 36 100.0 30 NNNNNNNNNN .................................... AGCCCCGAGCCACGCCTGCCGCCATGCGCT 104020 36 100.0 30 NNNNNNNNNN .................................... GGTGCAGGTCGCGCTCCACCTTGCCGCCAT 104086 36 100.0 30 NNNNNNNNNN .................................... ACGCCGACTATAGAGGCGCTCGTGAAGCGC 104152 36 100.0 30 NNNNNNNNNN .................................... CGTCGAGGTTTCGGAAGCCGATTACGCCGC 104218 36 100.0 31 NNNNNNNNNN .................................... GTAGCAATGGGTGAGACACGCAATCTCAACT 104285 36 100.0 30 NNNNNNNNNN .................................... GCGCCTCGCTCGCAATGATGTCCGCATAAT 104351 36 100.0 30 NNNNNNNNNN .................................... TGACGCCGTTGCGGTAGGTCAGCACCTCGC 104417 36 100.0 1 NNNNNNNNNN ...............................G.C.. NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 49 36 30 GCTGCGGATTGCGGCCGTCTCTCGATTTGCTACTCT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [35.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [583,47] Score: 0.18/0.18 # # Final direction: F [0.96,0.64 Confidence: LOW] >NC_009767 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1975555 36 100.0 37 CCCGCGCGAG .................................... TGCCACGGGCTGCACGACGGCCTCCAGCGCACGCTGG 1975628 36 97.2 36 CGCACGCTGG ...................................C GCGGCAGCGCCGCCGGCAGCACGACTAGCCCGCCGT 1975700 36 97.2 36 AGCCCGCCGT ...................................C CCGGCTGCTGCATGCTGGACTACGCGCGCGTTCGAT 1975772 36 97.2 35 CGCGTTCGAT ...................................T CGCCATCTACGCCGTGCGCGGGATGTGTGCGTGGA 1975843 36 100.0 39 TGTGCGTGGA .................................... TTTCGTCGCCGAGCGAGCGACGCCGTTTTCCGTGACGAG 1975918 36 100.0 37 CCGTGACGAG .................................... TCGACTTCAGGTATTGCCGACCTTTATCTTCTCCTAT 1975991 36 100.0 40 CTTCTCCTAT .................................... TTTTGATGCGCACTGTTGAGCGCATTGAATACGTTCTTTA 1976067 36 100.0 39 ACGTTCTTTA .................................... TATGCGGCGTATGAGCGTCGCCGCCCCCGCCGCGAATAG 1976142 36 100.0 37 CCGCGAATAG .................................... TCCAGTTTGACGCCGACGCCCGCCGAACCTCGCACGA 1976215 36 100.0 41 CCTCGCACGA .................................... TTGCGCGCAAAGAGCACGACTTCATTCGAGGGACCGGCGTC 1976292 36 100.0 38 GACCGGCGTC .................................... TGCCAATCAAGAATGGCGCGACGGTCATTCACGTCGAA 1976366 36 100.0 36 TCACGTCGAA .................................... TGATTTGCCGAATACGCTCACGCGTAAGACCAATGA 1976438 36 100.0 35 AGACCAATGA .................................... TCGACTGGCGCAATTACATCTTCGCCAATCGTCGC 1976509 36 100.0 38 CAATCGTCGC .................................... TGTAAACCTTTTTGTGCGCTTGTATCTCCATACCGTAG 1976583 36 100.0 39 CATACCGTAG .................................... TTACCCCCGCACCCAGCAACCCCGTGCTGATTGAGTTTC 1976658 36 100.0 38 ATTGAGTTTC .................................... TCATACATCGGGCGACAGCCCATCTCCGACTTGTCCAC 1976732 36 100.0 36 ACTTGTCCAC .................................... TCGTTTGCGTCTGCGCCATTTGAAACGCCATCACGA 1976804 36 100.0 37 GCCATCACGA .................................... TTCCATGCCGATGAACCGCCCTTGCGCGTCAAAGAAG 1976877 36 100.0 37 GTCAAAGAAG .................................... TTTATACCCACGATGAATGCGTCCATATCGGTGGAAT 1976950 36 100.0 38 TCGGTGGAAT .................................... TCTTGCGTCTGGATTGCCTGCAACCGCGACAGATGCGA 1977024 36 100.0 36 ACAGATGCGA .................................... TACCCTGGTACTATTCTGAACTAGTACCATTGCCTG 1977096 36 100.0 37 CCATTGCCTG .................................... TTTTCGCGAGAGAGAGCACGCCAGTGACCGAAAAAGA 1977169 36 100.0 37 CCGAAAAAGA .................................... TCGATCCGGCAAGATCGCATTCACATCACGAATATCG 1977242 36 100.0 37 ACGAATATCG .................................... TCAGGTTACCCTGGTCAGCTTCCAGACAGGATTTATC 1977315 36 100.0 38 AGGATTTATC .................................... TAGACATGGACGATTCGTCGCCGCGCAATGTTGCTTGC 1977389 36 100.0 36 TGTTGCTTGC .................................... TCCTGATACCGCGGATCCATCATCGTCCCGGTCTTA 1977461 36 100.0 36 CCCGGTCTTA .................................... TTCAGGACGGCAGCCGCCGTCGACCGAAAACCCCAG 1977533 36 100.0 38 AAAACCCCAG .................................... TCCGTGCATCGTGGCGTTGGCAAACTCTGCGTTTGGCA 1977607 36 100.0 37 GCGTTTGGCA .................................... TGTAGGGATTGGTATATTCAGACCGATTCAGCGCCAG 1977680 36 100.0 39 TCAGCGCCAG .................................... TTCGTTCCGTGAGCGGAAGTATCGTTATCAGTTGCACAG 1977755 36 100.0 37 AGTTGCACAG .................................... ACATCCGACCATCGCCCGGCGCCTTTGCGCAAACGCC 1977828 36 100.0 37 CGCAAACGCC .................................... ACGGGGAACTCCAATGAGAGGGGAACCAATTGAAGAC 1977901 36 100.0 37 AATTGAAGAC .................................... AGGACGACGACGACGGCGGGCACCCAGGGACGCCGAA 1977974 36 100.0 37 GGACGCCGAA .................................... TGAGACGCCGAACTCGGACGTCAACCGTGTGGAACGC 1978047 36 100.0 36 TGTGGAACGC .................................... TGCGCTCCGGGAGGTATGGGCGTGGTCAACTGGTCA 1978119 36 100.0 38 CAACTGGTCA .................................... TCTGGACGCGCGCCGGTGAGACCTGCCATCAGACCTTC 1978193 36 100.0 37 TCAGACCTTC .................................... TGTACTCAGTCGTTGCGCGAGAGTCTGCACGTGCTCA 1978266 36 100.0 38 CACGTGCTCA .................................... TCGGTGCTCGACGCATGGACGGCGTCGCTGCGTGCATC 1978340 36 100.0 37 TGCGTGCATC .................................... TGCTGCGGACGCAAGTTCCGTCTGCGTCGCTGATGCA 1978413 36 100.0 37 CGCTGATGCA .................................... TTCAGTTTCGCTTGAGACGCTGCGACCTGAGCAGTGG 1978486 36 100.0 37 TGAGCAGTGG .................................... TATGAGGAGCGGTGTCATGGGTGTCATGGAGGATGAC 1978559 36 100.0 38 GGAGGATGAC .................................... TCTGGCGGAGGCGATGGACGCCGCGCTGTCCATCGCCG 1978633 36 100.0 36 TCCATCGCCG .................................... TCCGCGACGGGGGTGGTGTATTTGCGTGGCGGATGG 1978705 36 100.0 40 TGGCGGATGG .................................... TTGGACCGCCGAATCCGCGACGGTGCCGGAAGCGACCGCG 1978781 36 100.0 36 AGCGACCGCG .................................... TCCGGTGTGGCTCAACCACACCTTGCCGATTAGGAG 1978853 36 100.0 37 CGATTAGGAG .................................... TCGCCGTCCGCTGGCGTCCGGTCGGCGCGGTCGCCAA 1978926 36 100.0 37 CGGTCGCCAA .................................... TTGCCGCAACGCTTCAAACATGCGCGGTTCCGACGCG 1978999 36 100.0 36 TTCCGACGCG .................................... TACGCAAGACAATCAGGTCGCATTTCTCACATTGCT 1979071 36 100.0 TCACATTGCT .................................... TTCAATCGAG ========== ====== ====== ====== ========== ==================================== 49 36 37 GTTTCAGTGCTCTTCTGCGAGCCGAAAATTCGGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [23.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [291,6491] Score: 0.18/0.18 # # Final direction: R [0,1.23 Confidence: HIGH] >NC_009767 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1979218 37 100.0 37 GCGCCGTTGC ..................................... CAACGCGCCCGCGACGGCCGCAGCAGGCTTTCGCGGA 1979292 37 100.0 37 CTTTCGCGGA ..................................... CCAGCAGCGCCAGCGGCGGGATCACGGGTAGAACGAA 1979366 37 100.0 36 GTAGAACGAA ..................................... TGGAGAAGATGCCGCCGCCCGCCGTTGAACGCCTGA 1979439 37 100.0 36 GAACGCCTGA ..................................... CGTAACGCAGAAGGCGGGAGCAGCGGTGCGGGCGCT 1979512 37 100.0 38 TGCGGGCGCT ..................................... CTGGAGAACGGAACGACGATCCTGGTTGCAGGCGTCAC 1979587 37 100.0 35 CAGGCGTCAC ..................................... GCCGCGCCTCGCACCAAAAGCGCCAGCGCCTCGTG 1979659 37 100.0 36 GCGCCTCGTG ..................................... GGCGCGCGCGAGGATGGACCCCATGCCGAAATCAAA 1979732 37 100.0 36 CGAAATCAAA ..................................... TTGATGGCGTGAAGCGACGGGCTGTTGATTTTGATG 1979805 37 100.0 36 GATTTTGATG ..................................... TGATTATATGGGTCTTCTGGTTCTTCGAGAAACAAT 1979878 37 100.0 36 GAGAAACAAT ..................................... CCGAGAGGAGAGATGAGGAGCATCCTCAAGGAAAGA 1979951 37 100.0 35 CAAGGAAAGA ..................................... CGTACTGGATATTGACAACGGTTCGGTTCCGGTCT 1980023 37 100.0 36 GTTCCGGTCT ..................................... CTCGTATTGTCGATGCGTTTCGGCGGTGACATATGG 1980096 37 100.0 36 TGACATATGG ..................................... CCGGTGCTGCGATTCTCGGCGGCGCTGGGTGAGTCG 1980169 37 100.0 35 GGGTGAGTCG ..................................... CCGGAAGCATAGACAGCGCGCGTCCACAGCAACCG 1980241 37 100.0 37 ACAGCAACCG ..................................... GTTATTGCAGGGAAAATATGGTTTTACAGATGGCTAT 1980315 37 100.0 37 AGATGGCTAT ..................................... CGGAGACGAATATGACGAGGAGGCGGACAGGTATTAC 1980389 37 100.0 36 CAGGTATTAC ..................................... CGAGCGCGGCTCTGCGTGGTTTTTAAGCACTCCGCG 1980462 37 100.0 36 GCACTCCGCG ..................................... TGAAGTACGTCGCTGGACGGCGTACTTCCAGCCGAC 1980535 37 100.0 36 TCCAGCCGAC ..................................... ACTACTGGCTGCTCGCGCGCGATCCCCCCGCGCGCA 1980608 37 100.0 36 CCCGCGCGCA ..................................... CGTACTGGAACGGCGAGTGCGATGACGCGATTGCGT 1980681 37 100.0 36 GCGATTGCGT ..................................... TGCGTGGCTTTGGGAGCCGAACGCGCGCTCCGAAAT 1980754 37 100.0 38 GCTCCGAAAT ..................................... TGTTGCGCCAGAGCGAGCGCGGCGGCGACGGCGCGGAG 1980829 37 100.0 35 CGGCGCGGAG ..................................... GGCATGTCGGTGCTGTGCGAGTTCAATGCCATCCT 1980901 37 100.0 36 ATGCCATCCT ..................................... ATACCTGTCTTCAATAGCCGAAGAACCCAACTCCAA 1980974 37 100.0 37 CCAACTCCAA ..................................... TGCCAGGTTTGTACAAGGCGCAAAAAGAGTTGGCGGC 1981048 37 100.0 36 AGTTGGCGGC ..................................... TGGAGCGGGCGATGCAGGATCCGCGATTTCCGACAG 1981121 37 100.0 36 TTTCCGACAG ..................................... GCCGATTGGAAGCGGCGCGCTCGATGTGGATGAGCG 1981194 37 100.0 36 TGGATGAGCG ..................................... TCAGTGCTTCGCATACGCGCTGATCGTCGGGTGAAT 1981267 37 100.0 36 TCGGGTGAAT ..................................... CTACCCGGGCCGCTTCCAGATCGACGTTTCGATTGA 1981340 37 100.0 36 TTTCGATTGA ..................................... ATAGCTGACTGCGCGTCTGTAGTCGGGGCTGTCTTT 1981413 37 100.0 37 GGCTGTCTTT ..................................... TCGTCGGCATTGTCGGCGCTGTGCGGTCTGCGTGGGA 1981487 37 100.0 35 CTGCGTGGGA ..................................... AGTCGAAGCCTAGGGGGCTAGATTGGAGAACGCGA 1981559 37 100.0 36 GAGAACGCGA ..................................... CGCGGCCGTTGCTCGCGATCTTCTGGCGCTTGACGG 1981632 37 100.0 36 CGCTTGACGG ..................................... CCGAGTACGAGGTCGACTACGAGACCTCGTTTCAGG 1981705 37 100.0 35 TCGTTTCAGG ..................................... TCGGGCGCGCCATCGCCGCCGCGCGCGAGGCGCGG 1981777 37 100.0 36 CGAGGCGCGG ..................................... CGCCTCAACCACGCCGCGCCGGTTAAACAATCGCCA 1981850 37 100.0 36 ACAATCGCCA ..................................... CTACGTTGGTTGTCGTCGATGCCGACACCGATGACG 1981923 37 100.0 37 ACCGATGACG ..................................... CCGTCTGGACCGGGCGCGTCGAAAACGTCGAAAGCGA 1981997 37 100.0 38 TCGAAAGCGA ..................................... TATGGACGGCGATCAATCGATCGCCGTCCTCGTGAAAA 1982072 37 100.0 36 CTCGTGAAAA ..................................... TGCGCCCGCGAGCGCGCCGCCCGTGACTTTGTTGAT 1982145 37 100.0 36 CTTTGTTGAT ..................................... CGATCACATTGGGCGCGCCGAGCGCGGCCAGCGTCG 1982218 37 100.0 37 GCCAGCGTCG ..................................... TTGGCGTGGGACGAGGACGAGCCGACTTTGGAGATTT 1982292 37 100.0 34 TTGGAGATTT ..................................... TTATCGTGCGCGCGACGGCGCACGGAAAGCGCGT 1982363 37 100.0 35 GAAAGCGCGT ..................................... GACAGACGAGGTGCGTATCCCGCAGAGGCATTACG 1982435 37 100.0 38 AGGCATTACG ..................................... AAAGAATGAGTTTGGCGGAGTCATTGCGGGCGGTCCGA 1982510 37 100.0 38 GGCGGTCCGA ..................................... GGAGATGGCGATGAACTAACGTAAAAGATATCGTTAAC 1982585 37 100.0 36 TATCGTTAAC ..................................... GTTGCGGCGCTTCGAGCACTGGCTGCGCTCACTGGT 1982658 37 100.0 37 GCTCACTGGT ..................................... CAACCGGGGCTATCCGCGTTTCATTTTCGTGGCAAAA 1982732 37 100.0 37 CGTGGCAAAA ..................................... CCACGCGCTTGTGTAGCTCTCTGAACCCGAACCATCC 1982806 37 100.0 32 CGAACCATCC ..................................... ATTGCCCGGAGGGGCGCGCCTTGCGTATCAGG 1982875 37 100.0 37 GCGTATCAGG ..................................... CAACCGACCCCGGAGCGGGTAGCAGCGTTTGGCGTTG 1982949 37 100.0 35 TTTGGCGTTG ..................................... TCCTTGGGCGTGCGCCTCTTCGTCTTCGTCAGGGC 1983021 37 100.0 35 TCGTCAGGGC ..................................... TTCGATTTTTGTCCATTTTGTGCGATTTTTGTGTA 1983093 37 100.0 37 TTTTTGTGTA ..................................... GGACTTTGACGATGACGGGACGCAGCATGTATTCGAC 1983167 37 100.0 36 TGTATTCGAC ..................................... GCCCTCGCGCCGCCCGGCAGCCGGATCGCCCCGACC 1983240 37 100.0 35 CGCCCCGACC ..................................... CGTTTCCGTCGTTTTTTGTGCGATGATGATGATGC 1983312 37 100.0 37 ATGATGATGC ..................................... CTATTTTGAGGCGCGCACAGGGATGCAATACGAAGAA 1983386 37 100.0 40 ATACGAAGAA ..................................... AGGCGGGACGGTTGGATGACCTGATAGGTGAGGTGCTGTA 1983463 37 100.0 36 AGGTGCTGTA ..................................... GTACTTGCGTGTGCCGGTGACAATCGTGATTGTCCT 1983536 37 100.0 35 TGATTGTCCT ..................................... TTTAACGCCAGCATCGCCAGGCTCTCGAACTCGTC 1983608 37 100.0 35 CGAACTCGTC ..................................... TGAAAGGAAGGAAACAATGGCGAACGGCGAACAGA 1983680 37 100.0 39 GGCGAACAGA ..................................... CGAGGGCGGGCGCGTCATCGGCGCGAATGCGCTCGCCCT 1983756 37 100.0 35 CGCTCGCCCT ..................................... CCGCCGCCGGATCGCCCCGCCCAGGGGTAATCAGG 1983828 37 100.0 35 GGTAATCAGG ..................................... CGAAACGCAGGCTTGACCTCGCCTACAACGCCGAA 1983900 37 100.0 36 CAACGCCGAA ..................................... GTGCGTCGATTGACTAGGCGTTGCTACGTCGCGTCT 1983973 37 100.0 36 CGTCGCGTCT ..................................... CTTATGCTGAAAACAGCACAGAAAGGGGGGATTGAA 1984046 37 100.0 39 GGGGATTGAA ..................................... TTGGTCGCCCGCCACGCTGAACAACCGCAAGTTCAACCG 1984122 37 100.0 36 AGTTCAACCG ..................................... GGCGCTCGGTACGGGATGGGAACTGGTGATGGCGAA 1984195 37 100.0 36 TGATGGCGAA ..................................... GGTCCATCGAGCCGGGACCTGTTACATCGAAATCAT 1984268 37 100.0 37 TCGAAATCAT ..................................... TTCGCCATACAGACACCCCGAGCTGGTCTTGACCGAT 1984342 37 100.0 35 CTTGACCGAT ..................................... GCACCAGCGCGCTGGAAAGAGTCGCGCGGGGATCG 1984414 37 100.0 38 GCGGGGATCG ..................................... ATGATGTCAGAGCGCTGCTCCCAGGGCTCCGGAGGCTC 1984489 37 100.0 37 CCGGAGGCTC ..................................... TCGGATTGCGGCGCTGCCGGATGAAATACAGCTCGAC 1984563 37 100.0 36 ACAGCTCGAC ..................................... CGGATAGTCGCGGGGTTAGCCTTGATGCACTAGTGG 1984636 37 100.0 36 GCACTAGTGG ..................................... AGATATGCGCGCAAGCGTCACGAGACGACGCAAGCG 1984709 37 100.0 36 GACGCAAGCG ..................................... ATTGCGGTCAAACGCGCTATCGGACGCGGCTAGTTT 1984782 37 100.0 37 CGGCTAGTTT ..................................... TCGGTCGCAATCATCAATAGACGCACACGCGCAAAAA 1984856 37 100.0 CGCGCAAAAA ..................................... CCCGTCTTCG ========== ====== ====== ====== ========== ===================================== 78 37 36 GTTTCAGTGCTCTTCTGCGAGCCGAAAATTCGGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.05%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [35.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [3954,705] Score: 0.18/0.18 # # Final direction: R [0.18,0.64 Confidence: MEDIUM] >NC_009767 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2544138 37 100.0 41 ATCATCGAGG ..................................... CGCGCCAACTGATCGCGAATATCCGCTGCGGTGCCGATTTC 2544216 37 100.0 40 TGCCGATTTC ..................................... TTGCTTGCGCTGTCGGTCATCGAGAGCGCGCCGCTTGCGG 2544293 37 100.0 38 CCGCTTGCGG ..................................... TTATCCAGACCATCAATGCTACGACGAGCAATGTTGCC 2544368 37 100.0 38 CAATGTTGCC ..................................... GTCAATCAACTGCTGCGTTATCGTTATCATCGCTCTAA 2544443 37 100.0 41 ATCGCTCTAA ..................................... AAAGAAACAAACGAAGAGCCGCCGAAATGGAGAGGGAGGTG 2544521 37 100.0 40 GAGGGAGGTG ..................................... GTGAGAATTTCCATCTCCTCCTCTGTCAGCAGCGCGCGCA 2544598 37 100.0 35 AGCGCGCGCA ..................................... CTCTCCATATTCGCTCCTTTGTTAATGTACCCGGC 2544670 37 100.0 43 TGTACCCGGC ..................................... GTAGTAATAGTCGCCGTAGCCACCGAGTTGTCTATAGAACGAC 2544750 37 100.0 37 ATAGAACGAC ..................................... CTCCTCCGATAAGAGGAATGTACAGCGAGGTGGCGGA 2544824 37 100.0 36 AGGTGGCGGA ..................................... GGTTCACAATCGGCTCGATCTTACCAATCTCCCTCG 2544897 37 100.0 40 ATCTCCCTCG ..................................... TTTCCCCCCCCCTATATTTCAGCCTCTTTGGAGGCTAGGG 2544974 37 100.0 40 GAGGCTAGGG ..................................... TTTCGTGCCGCTTCCGCTTGCGGCGATCACAACAGCGCGA 2545051 37 100.0 40 AACAGCGCGA ..................................... GAAACGCTGCGGGCCTCAATGCCGGATTGTCCGCCCAGTG 2545128 37 100.0 37 CCGCCCAGTG ..................................... ACATGAACCCCATCGTCTCGATTGACAAGACCGACCG 2545202 37 100.0 36 AGACCGACCG ..................................... ACTATTCTGTCCTCTCGGACAAATGTGGTGGAAAAA 2545275 37 100.0 39 GGTGGAAAAA ..................................... AAGGGGACCAAGTAAATGATCCGCTATCGTGCTCAAAAC 2545351 37 100.0 40 TGCTCAAAAC ..................................... TCAACTCGAAAGTTGAGCGTGAACGCGATAAGAAATGCCG 2545428 37 97.3 42 AGAAATGCCG ........C............................ GGGCTGTACGCGGATATCTTCCCCGATCTCTCGCCCAGAGAG 2545507 37 100.0 44 GCCCAGAGAG ..................................... TACCATATCGCTACGGTAATTAAAGGTGAGCGCCACCGATCTAA 2545588 37 100.0 37 ACCGATCTAA ..................................... CCGCTATAAGCGCGAGATCCACCTCCTGAAACGAGGG 2545662 37 100.0 39 GAAACGAGGG ..................................... AATCGAGTAAACCGTGGAATAGTCTGTTTTTAATTCGGA 2545738 37 100.0 TTAATTCGGA ..................................... CATTTGTTGC ========== ====== ====== ====== ========== ===================================== 22 37 39 GTGGAAAAACCCCAAATCCCCGCCAGGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [13,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-11.30,-10.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [41.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [176,4205] Score: 0.18/0.18 # # Final direction: F [5.65,0.45 Confidence: HIGH] >NC_009767 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2545895 37 100.0 40 TGGCGACTGT ..................................... GGGCTTGACCTCGTCGGTCAAGCTCCAGCCTTTGGTGGCG 2545972 37 100.0 39 TTTGGTGGCG ..................................... TCGTGTTCTCGACGCAGGGGATCGAGGGGGTGGAACAAC 2546048 37 100.0 37 GTGGAACAAC ..................................... GATAAGGTAGGTAAAATATTCCTCCTTTCCGAGGAAA 2546122 37 100.0 35 TCCGAGGAAA ..................................... CTCGGTTTCTGCGGTTGAGATGGCGCGGGCGGCAT 2546194 37 100.0 43 CGGGCGGCAT ..................................... TGGAGAAAACCACCTGCGGGTTTTCTCTAATCTGGTGGGCGAG 2546274 37 100.0 45 GGTGGGCGAG ..................................... CGCCCGCCGTCTGCCGCGCCTTCAGCGGGCGCGGCGCGGGAGCGG 2546356 37 100.0 39 GCGGGAGCGG ..................................... TTGGCGTTCGGGAGCATGATCGTCTTGGCGGAGGCATGG 2546432 37 100.0 40 GGAGGCATGG ..................................... CCGGATTGACCTAAGCCTGGTCGAGTAGGAACTCCCTCAA 2546509 37 100.0 36 ACTCCCTCAA ..................................... ACGGACGCGCATGGCAAATTGCCAAAACGCAACCAG 2546582 37 100.0 34 ACGCAACCAG ..................................... TCAAAGACCCATATAATCATTCCCCTCTGTGTCT 2546653 37 100.0 43 CTCTGTGTCT ..................................... TACCAGATCGGGTAAAACCGGTTCTGGTACCGAATTTCTAGTG 2546733 37 100.0 39 ATTTCTAGTG ..................................... CGGGCGCAAACTCGCCGCTGTGCAACTGATAACGATACT 2546809 37 100.0 40 TAACGATACT ..................................... GTTCGCCGTCGATTTCGCTCACGCACAGGCGGGCGACGAC 2546886 37 100.0 40 GGGCGACGAC ..................................... GCAAATCATCGACGAGTCTGGAAATGATGTGACATCTCTG 2546963 37 100.0 39 GACATCTCTG ..................................... TAAATACGCGATTGCGTATTACTGGAATGGGGAACTTTT 2547039 37 100.0 35 GGGAACTTTT ..................................... CTTACATTCCCAGCGGTGTACGTCGAGCATTTTGG 2547111 37 100.0 39 AGCATTTTGG ..................................... ATGTCGGCGTGGCGGCGCTGTACCGCACTGCGCCGGAGG 2547187 37 100.0 42 GCGCCGGAGG ..................................... TTTCGTCAAGACCTCCATTTCCTCCTCTGTCAGCAGCGCCCG 2547266 37 100.0 39 GCAGCGCCCG ..................................... TCGCCTCCCGCAAGCTCCTCCTCGAATCCCCACGAAAAC 2547342 37 100.0 41 CCACGAAAAC ..................................... TTTGTTCGAGATACGGCGGATAGATACGCTGATAAGTTAAA 2547420 37 100.0 43 ATAAGTTAAA ..................................... GTACAAACCCCCCCACCCCGACGCCTAAAAGCAAGTTCAGTGC 2547500 37 100.0 36 AGTTCAGTGC ..................................... ACAACGCACCTTCATGCTCCAAGAGCATGTAATCGC 2547573 37 100.0 41 ATGTAATCGC ..................................... CGTATTTGCGCCTTCGACCACAGAAACTGCTATATAAGCAG 2547651 37 100.0 37 ATATAAGCAG ..................................... GAAGAACACAAAAACATATTAGAAAAATTAAAACGAG 2547725 37 100.0 39 TTAAAACGAG ..................................... GGCAATGTTGATGTCCAACCAGACATAGTTTCTGGCGCT 2547801 37 100.0 36 TTCTGGCGCT ..................................... TTGATAAGACTGACCGTTACGCGAGCCTTCATGATT 2547874 37 100.0 39 CTTCATGATT ..................................... TCAAGTATCATTGATCACCACCTTCATAAGAGCGATGAA 2547950 37 100.0 41 GAGCGATGAA ..................................... CGACATCCACGCCCGCAGGAAACGCCACCCGCGCCATCTCG 2548028 37 100.0 38 CGCCATCTCG ..................................... GTTAATAAACGCGCATTGTCGACCAAGCGACTACGGCA 2548103 37 100.0 38 GACTACGGCA ..................................... CGAAGCCACTCTCGCGCAGGCGCGCGCGGCGGCGTATG 2548178 37 100.0 40 GCGGCGTATG ..................................... CTCCTCGCTGTTCGGGTCACGAAGCAATCGCCGCATCTTC 2548255 37 100.0 40 CCGCATCTTC ..................................... GCCAAGTTAGCCGCCGGTCTCGTATCGACCGCCCATTGTT 2548332 37 100.0 37 GCCCATTGTT ..................................... TACAGCCTAATCAGGCTGTACGCGACGATCTCATAAG 2548406 37 100.0 35 ATCTCATAAG ..................................... CCAAGGAAACTCACAATTGCTTAATCTTAGAAACA 2548478 37 100.0 38 CTTAGAAACA ..................................... ATTGAAAATGCGCCGGCTGGCATCGTCACGGTGCTAAA 2548553 37 100.0 39 CGGTGCTAAA ..................................... TAAGGGTGTACGCGGCGATTTCGTAGGTAAGCCAAACAA 2548629 37 100.0 39 AGCCAAACAA ..................................... AACGGCGGACATATCCGCCGAAATTGAAGAGGCGATGAA 2548705 37 100.0 36 AGGCGATGAA ..................................... TTGAGCGAGTTTTTCGGTGTGAAACGCTACCTCAGG 2548778 37 100.0 41 CTACCTCAGG ..................................... GTAAATTATTACTGACGCAACAAAAGCATTGTTTACAAAAA 2548856 37 100.0 40 TTTACAAAAA ..................................... AGAAAACCCCCGAATGACCAACCGAACCTGCACACCGTAC 2548933 37 100.0 42 CACACCGTAC ..................................... GCGTTCTCGATGCCTTCGATGCTTTCGGGTGGTGTCTCGCTG 2549012 37 100.0 44 TGTCTCGCTG ..................................... TCGTCTCGCGCCGCCTCCACTGCGCGCTCCGCGTCAATAATCGC 2549093 37 100.0 36 CAATAATCGC ..................................... GTACAGGAACGCGTGTACGCTTATCCCGTGAACTCA 2549166 37 100.0 41 CGTGAACTCA ..................................... CGCAACCGCCGCGCGATATGCGACGCCTCGGTCCACGTAAA 2549244 37 100.0 TCCACGTAAA ..................................... CCCCGTGCGG ========== ====== ====== ====== ========== ===================================== 45 37 39 GTGGAAAAACCCCAAATCCCCGCCAGGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [13,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-11.30,-10.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [43.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1933,699] Score: 0.18/0.18 # # Final direction: F [5.69,0 Confidence: HIGH] >NC_009767 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================== ====== 2848475 22 100.0 52 AATCTGAGCG ...................... CGCTCGGGGTGACAATTCTCTCCGATCTCTCACGATCCAACCAGATAGTTGA 2848549 22 100.0 77 AGATAGTTGA ...................... ACGATTGAAGGCGCCGCCTTCGTGTCATTCCGAGCCCTTCGCTTCGCTCAGGGTAAACGCAGCGCGGAATCTGAGCG 2848648 22 100.0 52 AATCTGAGCG ...................... CGCTCGGGGTGACAATTCTCTCCGATCTCTCACGATCCAACCAGATAGTTGA 2848722 22 100.0 77 AGATAGTTGA ...................... ACGATTGAAGGCGCCGCCTTCGTGTCATTCCGAGCCCTTCGCTTCGCTCAGGGTAAACGCAGCGCGGAATCTGAGCG 2848821 22 100.0 AATCTGAGCG ...................... CGCTCGGGGT ========== ====== ====== ====== ========== ====================== 5 22 64 GGTCGCGCTAGACCCCTCGCTT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [51,108] Score: 0.18/0.18 # # Final direction: R [0,0.55 Confidence: HIGH] >NC_009767 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3447528 37 100.0 35 CCCACCCCGT ..................................... AAACACCCGGCGGGCGAGGTCGACCTCGACTACCT 3447600 37 100.0 35 TCGACTACCT ..................................... GCGATGCACGGGGGGCGCATGAATGCGATGGCCAC 3447672 37 100.0 38 CGATGGCCAC ..................................... TAGCCCGCGAAAACAAGCTTCCGAGCGTGGCAGCGCTC 3447747 37 100.0 37 GGCAGCGCTC ..................................... GACCGGCAGACCGAGGAGCACAGCGCCCGCGCCATGT 3447821 37 100.0 38 CGCGCCATGT ..................................... ACCGCAGCCGAGATGGTGGTCGGGTTGCACCTCGCGGT 3447896 37 100.0 37 ACCTCGCGGT ..................................... GCCTGCATCCCACTTCCTCCTGCTGACCCACCCTCAG 3447970 37 100.0 37 CCACCCTCAG ..................................... CGCCTTGGCGCGCGGGTGCGGGTGAAATAAACCGCAT 3448044 37 100.0 37 TAAACCGCAT ..................................... ACCGGGTTCGGCTGGAATTCCTCCCCGAGCACGTCGA 3448118 37 100.0 38 AGCACGTCGA ..................................... GGGAAGGGGTGGCCCGCGTCGAGCAGGCCGCCGACCAG 3448193 37 100.0 41 CGCCGACCAG ..................................... CTGTGCGTCTGGTCGGGTTCCGCCGTGGCGCCATGCAGCGT 3448271 37 100.0 37 CATGCAGCGT ..................................... GAGGGATCCATGATCAGAGGTTGGTGGCGTTCGTGGT 3448345 37 100.0 37 CGTTCGTGGT ..................................... TGTGGAACGAGCCAAACCCTTGGCGGCAGCGCGGCGT 3448419 37 100.0 36 AGCGCGGCGT ..................................... CCGCCCAGAGATCGAGCGGGTCATCTGGCTGGACAA 3448492 37 100.0 40 GGCTGGACAA ..................................... GCGCCGGGTCGACCGCCGCCGCGCGGCGATGGTACGCTGG 3448569 37 100.0 GGTACGCTGG ..................................... CCGGTCCCGC ========== ====== ====== ====== ========== ===================================== 15 37 37 GTTTCAATCCCCTTCATGGCGGGGCTTTTGTTTTTTT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.20,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [428,102] Score: 0.18/0.18 # # Final direction: R [0.45,4.87 Confidence: HIGH] >NC_009767 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3448706 37 100.0 37 GCGGCGACGT ..................................... GATCATCGCCGCCGCCATCGTCGGCCTCGAGAAGCTC 3448780 37 100.0 37 CGAGAAGCTC ..................................... GATTATTCTTCCCTTTGCACTGCTCTCGTATCGCAGT 3448854 37 100.0 38 GTATCGCAGT ..................................... ACGGAGGAGCCCACGGCCGAGCCCACCGCCGCCCCGGT 3448929 37 100.0 39 CCGCCCCGGT ..................................... GCTGCGCGCAGCACCAGGACCTGGAGGCGACCCGGCGGT 3449005 37 100.0 37 ACCCGGCGGT ..................................... CATCGACCTGGACTGCTTCCAGGGCACCATCGAGCTC 3449079 37 100.0 40 CATCGAGCTC ..................................... GGATCCCGCCGCGTGTCGTGCTTCATTGAAAGGAGCACCC 3449156 37 100.0 36 AGGAGCACCC ..................................... GGATCATCTCGATCGCGGAGGCTGAGCAGGCGGCGC 3449229 37 100.0 39 CAGGCGGCGC ..................................... GGGTCGCAGTGGTAAACGCGGTGACCCAGAGGTAGACCT 3449305 37 100.0 36 AGGTAGACCT ..................................... TGATGGTCAGGTGCGGTGTAACCACTCGGGACGAAA 3449378 37 100.0 39 CGGGACGAAA ..................................... GGGTCGCAGTGGTAAACGCGGTGACCCAGAGGTAGACCT 3449454 37 100.0 36 AGGTAGACCT ..................................... TGATGGTCAGGTGCGGTGTAACCACTCGGGACGAAA 3449527 37 100.0 38 CGGGACGAAA ..................................... ATATTGTATTCTCTGTAATATTCATGAAGAACCCTCGA 3449602 37 100.0 37 GAACCCTCGA ..................................... CCAAGACCATCGACCTGGACTGCTTCCAGGGCACCAT 3449676 37 100.0 39 AGGGCACCAT ..................................... GAACGGCGGCAACGGCGGCCAGGATGGCGAGAAGGGCGA 3449752 37 100.0 37 AGAAGGGCGA ..................................... CCGTATCCATTGCGTCGGTGATGACAGTATCTTTAGT 3449826 37 100.0 37 TATCTTTAGT ..................................... CCCTCGCCGCCGTATGTCCTCTACTTGATGTCTACTG 3449900 37 100.0 37 ATGTCTACTG ..................................... ACGTGATCACGATGGGCCATGTGAGGTTCAGCGTGAC 3449974 37 100.0 40 TCAGCGTGAC ..................................... CCGACCGAGACGCCCAAGCCGACCGAGACGCCCAAGCCGC 3450051 37 100.0 37 CCCAAGCCGC ..................................... GGGCTGCATTTGACATCTTATGGACTCACTTCCGTAG 3450125 37 100.0 37 ACTTCCGTAG ..................................... GCCACCGCCCCCCAGGGCAACGGCGAGGCCCCGACCG 3450199 37 100.0 37 GCCCCGACCG ..................................... TCCCCGGCTCCGGCATCCTGGATACGGGGTACTGGGA 3450273 37 100.0 38 GGTACTGGGA ..................................... CGTAGAGAGAATTTCTCTAAAGCTCCGGCCACCGCATC 3450348 37 100.0 38 CCACCGCATC ..................................... CCCCCGCCGGAGGCGGGGGAAGGAGGAAGCCATGAGAT 3450423 37 100.0 40 GCCATGAGAT ..................................... CCGAAGAGGAAGCGGAACTCCGCGCGCGGAAGCGCCGCGC 3450500 37 100.0 36 AGCGCCGCGC ..................................... GGGTGGCCGCGGTCGAGCGGGCCGCAGACCAGCGCG 3450573 37 100.0 38 GACCAGCGCG ..................................... TCGGCGCCATGTGCGCCAGCTCGAAGTGGAGCTGGCGT 3450648 37 100.0 38 GAGCTGGCGT ..................................... GAGGCGCCCACGCCGCGCGCGTGCAGCAGAAGGCGCTG 3450723 37 100.0 38 GAAGGCGCTG ..................................... GTGCAGCGCTTCGCGTCCCGAGGCGCTGCCCATGGCGC 3450798 37 100.0 38 CCCATGGCGC ..................................... TCGGCGCCGGCGGCGGGGCGGGCGGCGGCGCGGCGCGT 3450873 37 100.0 40 CGCGGCGCGT ..................................... ACTTCGCCGCATTCCTGGCGAGACGATGGAACGTCTCGTT 3450950 37 100.0 38 ACGTCTCGTT ..................................... CCGGGCGCCCGCGAGCTGACGGGCTACGCGCTCATCGT 3451025 37 100.0 37 CGCTCATCGT ..................................... TGATCATCCGGTACTGCGTAGCCCCGGACCCGTGCAG 3451099 37 100.0 37 ACCCGTGCAG ..................................... GTCTCAGATCATCCAGTCGGACGTTCGCCTGTCGGAC 3451173 37 100.0 40 CCTGTCGGAC ..................................... CAAGGCTCAGCAGCTTCGCGATGAGATCAAGCGCCAGAAG 3451250 37 100.0 GCGCCAGAAG ..................................... GGGAGTCATG ========== ====== ====== ====== ========== ===================================== 35 37 37 GTTTCAATCCCCTTCATGGCGGGGCTTTTGTTTTTTT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.20,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [101,409] Score: 0.18/0.18 # # Final direction: R [0,5.05 Confidence: HIGH] >NC_009767 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3451694 37 100.0 38 GACGCGTGAT ..................................... CTGGACGCCTGCGCGCGCCTCCAGCGCTGGGGAACGGC 3451769 37 100.0 37 GGGGAACGGC ..................................... ATCCCCCCGCCGGAGGCGGGGGAAGGAGGGAGCATGT 3451843 37 100.0 37 GGGAGCATGT ..................................... GGGAAGGAGGGAGCATGTGGTGGAGGAGATGGTTCGC 3451917 37 100.0 37 GATGGTTCGC ..................................... AAGATGAGGAGGCCCTCCGCCGGGTCTTCGGCAACAA 3451991 37 100.0 37 TCGGCAACAA ..................................... CCGCTTCCGCTTCCTCCCGAGGAGGAAGCGGCGCTCC 3452065 37 100.0 38 GCGGCGCTCC ..................................... CTGGGGGCGCTTCGTTCCCACCGCCGCGTGGCCGTCGT 3452140 37 100.0 39 TGGCCGTCGT ..................................... CGCTCGAAACGGAGGCGGCCTGGGCGGCGCACCAGGCCG 3452216 37 100.0 38 CACCAGGCCG ..................................... GCCTCCACCCGCATCCGTGCGATGCGGGCGGAGTTGGG 3452291 37 100.0 37 CGGAGTTGGG ..................................... CCACGCTGGAGACGCAGAAGGGCAACGCCGACGCCGC 3452365 37 100.0 36 CCGACGCCGC ..................................... CGGCACGGCCGACTGCAGCCTGAACGGCACCGCCAA 3452438 37 100.0 38 GCACCGCCAA ..................................... CCATTCCTTCCCTCTCCCGAATGGGAGAGGGAAGGCGC 3452513 37 100.0 38 GGGAAGGCGC ..................................... TCGGCGAAAAGTTCGCCGTGTGGAATGGGGATGATTTT 3452588 37 100.0 37 GGATGATTTT ..................................... CCGGGGAGGCCGGCTATCCGTGCGACCCACCCATCCC 3452662 37 100.0 37 CACCCATCCC ..................................... AACGGGACGCCGCCCACCTGGCGCGGCGGTTGCTCAG 3452736 37 100.0 37 GGTTGCTCAG ..................................... CGCGGGAAGCGGTCGAGCGGATCGAACGGGACGCCGA 3452810 37 100.0 36 GGGACGCCGA ..................................... CCTTACAGGTCGCCGGGTGGTTTGCCGGCCCCATGC 3452883 37 100.0 41 GGCCCCATGC ..................................... AAGAGGCGCGGCTCCTTCTCAAACACGTTCCTGAGGCGCGC 3452961 37 100.0 37 TGAGGCGCGC ..................................... GGGAGGAGCGGAGCCGCCGCTTGATTGACCAGCTCGC 3453035 37 100.0 ACCAGCTCGC ..................................... CCCCTCTCAC ========== ====== ====== ====== ========== ===================================== 19 37 37 GTTTCAATCCCCTTCATGGCGGGGCTTTTGTTTTTTT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.20,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [38.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [408,112] Score: 0.18/0.18 # # Final direction: R [0.45,4.87 Confidence: HIGH] >NC_009767 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 4297314 36 100.0 35 NNNNNNNNNN .................................... AATGATTGAACCAATCCGCCGCCTGGGCCAGCCAG 4297385 36 100.0 37 NNNNNNNNNN .................................... ATATTTCGAATTCGACTAACCCGTACCAGTGTCCAGC 4297458 36 100.0 35 NNNNNNNNNN .................................... TCAACATATCTGAGACCGGGGGGGAATATTGCAGG 4297529 36 100.0 36 NNNNNNNNNN .................................... GCCATAGGTACTCCTCTGACCTATGACCGGCGTCAC 4297601 36 100.0 36 NNNNNNNNNN .................................... GGACGCAAGCGGTCTTATCCAGGCGCTTGCAGATTC 4297673 36 100.0 37 NNNNNNNNNN .................................... GAGCACTGGGCGGATAACCCGGCGCTGCGTCCTGCGC 4297746 36 100.0 39 NNNNNNNNNN .................................... TACGTGATCAGGTTGTGTGTTAATTATTACTGGATTAAC 4297821 36 100.0 36 NNNNNNNNNN .................................... TTCGCGACCGCGCCGACCGGACGCCAGCGCACCGCT 4297893 36 100.0 37 NNNNNNNNNN .................................... CGCGACGGACCGCGCGGCGCGCGGCGAACACGGCATC 4297966 36 100.0 36 NNNNNNNNNN .................................... TTCTCAAGGGCAACCAGTTTGTCAACCATATCGCGG 4298038 36 100.0 35 NNNNNNNNNN .................................... TGTCCGGGTTGACGCCTTCCTCACTGAAATGCAGG 4298109 36 100.0 36 NNNNNNNNNN .................................... CGGACAGCACCGCAGGCAGCAAGACGCCCAGCAGGC 4298181 36 100.0 38 NNNNNNNNNN .................................... CAGATCAACGAGTGGATATTGGTACTGTATATAACCGC 4298255 36 100.0 36 NNNNNNNNNN .................................... TTGCGCTTGGCAAGAGCCTCTACACGCACGGCGCAC 4298327 36 100.0 36 NNNNNNNNNN .................................... TTGCGTTCCCACAAGGTCGCCGTCGAAGACGGCGAC 4298399 36 100.0 37 NNNNNNNNNN .................................... GCCAGCGCCGTGTCGCCCGGCTCGGGGGTTATCGAAC 4298472 36 100.0 37 NNNNNNNNNN .................................... GGGGTTGGGGTTAAGAGGGGCCCACGACAGGACGCGA 4298545 36 100.0 37 NNNNNNNNNN .................................... CTTGATTTGCCGGGCCCGGAAAGCGGGGCGTATGCAC 4298618 36 100.0 35 NNNNNNNNNN .................................... CGCAGAGCACTGGGCGGACAACCCGGCGCTGAGGC 4298689 36 100.0 36 NNNNNNNNNN .................................... CGCGAAAGGGGGGGGGATTGGGGCAGTATGGTTAAC 4298761 36 100.0 37 NNNNNNNNNN .................................... TCGACGCGGAGACGGTCGAGGAGGCGGTCGAGGAGGC 4298834 36 100.0 37 NNNNNNNNNN .................................... ACCGCTCCCTCGCTTGCGTAGACGAACAACGTGCGCC 4298907 36 100.0 37 NNNNNNNNNN .................................... AACGCCGCGCCGCGCTCCTCATCAACAGCGCGCTCGC 4298980 36 100.0 37 NNNNNNNNNN .................................... TCAATGCTTACATCGATCTGGAACCGACCCGGATAAC 4299053 36 100.0 37 NNNNNNNNNN .................................... ATAGCGATGAAGGGGGGGATAACCTTCCCTTCTTTTC 4299126 36 100.0 36 NNNNNNNNNN .................................... CCCGTCCGCACGAGCGACATCGCGCGCGACGTGATC 4299198 36 100.0 36 NNNNNNNNNN .................................... CGTGGTGCCACGGCGCAGTCAACGACATGCGTCGAC 4299270 36 100.0 35 NNNNNNNNNN .................................... CGCTCGGCGTCGACGTGCTGCTCAATTACGCCGGC 4299341 36 100.0 36 NNNNNNNNNN .................................... TCGACAACACCGCGTCGCAGCAGTTCTTCCGCTACC 4299413 36 100.0 36 NNNNNNNNNN .................................... AAATTCGGCATCACGAACCTCCTCATCAACAAAAGA 4299485 36 100.0 36 NNNNNNNNNN .................................... GCGCGACTGACAGCAGCCCCATCGCCACGTTCACCG 4299557 36 100.0 37 NNNNNNNNNN .................................... TCCGGGTTCGTCCTTCTGGGCGCGTGGCGCGGCGCTC 4299630 36 100.0 38 NNNNNNNNNN .................................... CCCCGCTAGTACTTTAGTACCACACACACACCACCACC 4299704 36 100.0 36 NNNNNNNNNN .................................... TCCTCGCTCTACGACGGCGAGGACGGGCTGGCAGCC 4299776 36 100.0 36 NNNNNNNNNN .................................... ATGTGAATATGCCCGCCGATTGACCGGTAAGGATAG 4299848 36 100.0 36 NNNNNNNNNN .................................... CTTTTGCGGCGCGCCAGCGCACCCAGTCGCCGAACG 4299920 36 100.0 38 NNNNNNNNNN .................................... CGTCCAAACGTTCGTATCCTCAACCCAATCGCCGCCGC 4299994 36 100.0 37 NNNNNNNNNN .................................... CCAAAAGACGCCGGGCGTGTTCTACGCCCGCGCCGGC 4300067 36 100.0 35 NNNNNNNNNN .................................... TCCGCGGCGGCGGCGGCGATGCTCATCACGCGATG 4300138 36 100.0 39 NNNNNNNNNN .................................... GATGTCATAAACGAGCACGAATTTCTCGACACGCGGGTC 4300213 36 100.0 36 NNNNNNNNNN .................................... CGACTGCGGTCAACAGCGGCTCATCGCGCATTCGGC 4300285 36 100.0 37 NNNNNNNNNN .................................... ATCTGCTCATCGACCTGGGCGAGGTGACGCTGCCGCC 4300358 36 100.0 35 NNNNNNNNNN .................................... CCTCGTCGTTGTAAACAGAAACCGAGACCAACGTA 4300429 36 100.0 35 NNNNNNNNNN .................................... GTGTTCGACGCCGCGCGCGGGCTGTCGGGCTTTGA 4300500 36 100.0 37 NNNNNNNNNN .................................... CCTGAACCTCGCCAGGAATATCGACGCCGCCAAACTC 4300573 36 100.0 36 NNNNNNNNNN .................................... CAGACATGTGCAGCGTCAATGGAGTGACGCACGCAC 4300645 36 100.0 36 NNNNNNNNNN .................................... TGCTGCATTTGTAAAAAACGGGGAGTTTAGTCCTGA 4300717 36 100.0 36 NNNNNNNNNN .................................... AAAAAGGCCTCTGGGAGCCATTATAAGGCGCGAAAA 4300789 36 100.0 36 NNNNNNNNNN .................................... CCTTATGCTCGACATCGTAAGCGCGCCGCTGCCGAC 4300861 36 100.0 37 NNNNNNNNNN .................................... CAAAACCTGCAACGGCGAACAACATCGCATCCATCAC 4300934 36 100.0 37 NNNNNNNNNN .................................... CATCATGGATGAGTCGACGATGAGTCGCACGATAAGC 4301007 36 100.0 38 NNNNNNNNNN .................................... GCGTCAGCGCGGTGAGCGCAGGCAGCGCCAGGCTGCCG 4301081 36 100.0 38 NNNNNNNNNN .................................... GCTGGTATCGTCACGGTGCTAAACCGGCGAGGATTGGC 4301155 36 100.0 37 NNNNNNNNNN .................................... TGTCTACACGACAGGTACTCGGGAGTTTATCGAGGCC 4301228 36 100.0 39 NNNNNNNNNN .................................... GGCTCGATGTACTTGCCAGCGGGCGACGATCAAATTGGC 4301303 36 100.0 36 NNNNNNNNNN .................................... CTGATCTCATTCCTTGTCAGACCAACAACACTGCGT 4301375 36 100.0 36 NNNNNNNNNN .................................... GTCTGGACGATCGATGCGGGAATGTTAGCAAGCACG 4301447 36 100.0 36 NNNNNNNNNN .................................... TCGGTCTTTGTGGCGGTCAAGCGGGCGATTGGACGC 4301519 36 100.0 35 NNNNNNNNNN .................................... CTGTCACTGATGAGACGCTCATCAGTAACCGCAGC 4301590 36 100.0 36 NNNNNNNNNN .................................... GATGACATGGAACGGCGTTCGCGGTTGGAGCGCCTG 4301662 36 100.0 37 NNNNNNNNNN .................................... TGCGTGCATGAAGGCGTCTTGGCCTGAAGACGCTCAC 4301735 36 100.0 36 NNNNNNNNNN .................................... AAACTCGCGCGCGCGGGCGAGGAGGGGGTCGTCGGA 4301807 36 100.0 36 NNNNNNNNNN .................................... TGAAGGTATACGTAACGGTATAAACTGGTGACGGAC 4301879 36 100.0 37 NNNNNNNNNN .................................... GATGGAAGATCGAGGGAATCGAATTCGCGTCGCCGGC 4301952 36 100.0 38 NNNNNNNNNN .................................... CACGCATTCACACGCGTCCGCCTACAGGCATATACACC 4302026 36 100.0 37 NNNNNNNNNN .................................... TCGCGCGCGCGCGAGTACTGCTTCCACCGCCGGACCC 4302099 36 100.0 34 NNNNNNNNNN .................................... CGTTCGGCGCGTGATGAGTTGATTACGCGCTCAA 4302169 36 100.0 37 NNNNNNNNNN .................................... GCAGGGAGGGCATGAGATCGGCAAGCGCATCGTGCGC 4302242 36 100.0 35 NNNNNNNNNN .................................... TTCAGAGCCTTGTCCAATTCCAAGGCGACTTCCGC 4302313 36 100.0 37 NNNNNNNNNN .................................... GCTGGTCGAACTTTGTGGGTAGGAGGCACTAAACCGC 4302386 36 100.0 39 NNNNNNNNNN .................................... CACCTTTACTGAATAATACATGTTGACAAGAATGTCATC 4302461 36 100.0 36 NNNNNNNNNN .................................... TTGACGTGCGTGTCCGGCGTCTCACGCGACGCTGCT 4302533 36 100.0 35 NNNNNNNNNN .................................... TCGACCGCGCGCGCGCGGCGGTTAAGCACAAATGC 4302604 36 100.0 36 NNNNNNNNNN .................................... TCAGGACGGTCACCAGCGCTGGAGCATCGACGTAGC 4302676 36 100.0 36 NNNNNNNNNN .................................... CAGATTACACTAATGTACAATTTACATCTATCCTTC 4302748 36 100.0 37 NNNNNNNNNN .................................... CCATATCTCTTATATTCCTGACGTGATAATCATACCC 4302821 36 100.0 36 NNNNNNNNNN .................................... ACCAACGACGCCGAAGCGCCGGCGGTTATGGTGCGC 4302893 36 100.0 37 NNNNNNNNNN .................................... CTTATGCCTTATGAGGAGGACAAAAATGTGACTCTTC 4302966 36 100.0 37 NNNNNNNNNN .................................... GGCGCAATACACGGCGCCTTGGTAATTGTTGAAAAAC 4303039 36 100.0 36 NNNNNNNNNN .................................... TAAGTACGGTCGTCAATAGTACTTCCGGCGTGCCAA 4303111 36 100.0 38 NNNNNNNNNN .................................... CAAAAGTACAAAACTTCTTCTCACCGAAAAAATCGAAC 4303185 36 100.0 35 NNNNNNNNNN .................................... GCTGGGTGATGCGGGGCAAGCTGTTGAATCGTTGG 4303256 36 100.0 35 NNNNNNNNNN .................................... CCGTCGTGGTGCGGGTACAGTCCAAGCAATCCGTC 4303327 36 100.0 37 NNNNNNNNNN .................................... GCATTAAGCGCTCTATTTTTGCATCGAAAATAGTCGC 4303400 36 100.0 36 NNNNNNNNNN .................................... CTTACAGTCAATTGACAATATTACAGGCGATTGGTC 4303472 36 100.0 37 NNNNNNNNNN .................................... TCGGGATCGTATGCGTGGTACTACAAAGGGCCCGCGC 4303545 36 100.0 37 NNNNNNNNNN .................................... TCTTACCCCGCCAATAATGCAGCGCCGGACCATCCGC 4303618 36 100.0 35 NNNNNNNNNN .................................... TTCTAGTTTGATGATGAGCGACTGCGCGTCTTAGC 4303689 36 100.0 36 NNNNNNNNNN .................................... GTATATGACTTGTACAGGCGAACAGTGTACACCTCA 4303761 36 100.0 37 NNNNNNNNNN .................................... CCAATCGTATATATCTTATATTCCTAACGTGATAATC 4303834 36 100.0 34 NNNNNNNNNN .................................... CTCGCGACTTGACGCGCGACCTGATGCTCTGGGG 4303904 36 100.0 40 NNNNNNNNNN .................................... AGAAGTTTTGTTTTGGCGGGAAAACTGTGGTTTTACAATC 4303980 36 100.0 37 NNNNNNNNNN .................................... CGGCAGGAACAGCGCGCCAGCCTTCGAGCTCCGTGTA 4304053 36 100.0 35 NNNNNNNNNN .................................... TGCCCAAAAAAAACCGGCGACACGCTTCCATTGTG 4304124 36 100.0 37 NNNNNNNNNN .................................... TGGTGCAGTCTCTGGACTCCATCCAGGCGCTGCGTGG 4304197 36 100.0 35 NNNNNNNNNN .................................... CGATAATACGCCTGATAATACGTTGTTGCATGCGA 4304268 36 100.0 37 NNNNNNNNNN .................................... CTTCCGCGGTTTTGCGTACTTCCGCGTACTCCGGCGT 4304341 36 100.0 35 NNNNNNNNNN ..................A................. TCGGCAGATCCATGTCTTGCACGTTGACCGACCAG 4304412 36 100.0 36 NNNNNNNNNN .................................... CTTCCGACGCCGACGCCGGAGTACGCAGAAATTCGC 4304484 36 100.0 36 NNNNNNNNNN .................................... ATGTGACGGTCTGCGATATGTTTCAGGGCAACATAC 4304556 36 100.0 36 NNNNNNNNNN .................................... GTGCCATTCCGCACGAAGGAAGGAATACCGCTGCGA 4304628 36 100.0 36 NNNNNNNNNN .................................... CCGATCCGAGCGTGCTCTATTTACCGTGTTTTCGAG 4304700 36 100.0 36 NNNNNNNNNN .................................... ATTCTGATTTCGACGCTCTCTTGTGGCTTCAACCAC 4304772 36 100.0 35 NNNNNNNNNN .................................... CCTCTCACCACCATTTTCGCTATGTCGGCATCGGC 4304843 36 100.0 35 NNNNNNNNNN .................................... GCATTCCCTGATGGAGGACGGCATGGATTGGATAA 4304914 36 100.0 35 NNNNNNNNNN .................................... CGAGCGCCGACGGGCGCTGGTGGTCAGCGCGCTGC 4304985 36 100.0 36 NNNNNNNNNN .................................... TGAACAAAACTTTGGTCGATACCGGCCACTTTTTTC 4305057 36 100.0 35 NNNNNNNNNN .................................... AAAGTTCAATACCTGGAAAAACTTTACCTCGCAAA 4305128 36 100.0 37 NNNNNNNNNN .................................... ATTCGTAGTCCGGTTATCTGCTGGTCCTTATCGAACC 4305201 36 100.0 36 NNNNNNNNNN .................................... ACAATCTCGACGTAGCACAGTCGCCAACCCGGGTTA 4305273 36 100.0 36 NNNNNNNNNN .................................... CCCGAAGTGGTATGGACAGACCCCGACATATGCTCG 4305345 36 100.0 36 NNNNNNNNNN .................................... CTTGTACCCGCTGACAGTATTCCCCCCCCGTTTCAC 4305417 36 100.0 36 NNNNNNNNNN .................................... GTCGCTCCCTCTCCAACGCCGCCGGATTGACCTAAA 4305489 36 100.0 37 NNNNNNNNNN .................................... TGAAACGAATGTCGCTTTCGCCGCGAATGTCTCATCC 4305562 36 100.0 37 NNNNNNNNNN .................................... CCGGTCAAGCGCACCGTCAGGCAGCACCAAGCCTGAC 4305635 36 100.0 37 NNNNNNNNNN .................................... GCGATCCAGAGCGTTCTCCAACTCGTAAGGTTGTAAG 4305708 36 100.0 36 NNNNNNNNNN .................................... CGCTTTTCGCCGCGTTCAGCGCGCTGCGCACGGCGT 4305780 36 100.0 36 NNNNNNNNNN .................................... CGACTGTCATATGGGGATGCCGGTACATCGAGTGAC 4305852 36 100.0 40 NNNNNNNNNN .................................... TCGAGCATCAGCACTGGCGGGGTTGTTGGACACGGCAAGC 4305928 36 100.0 36 NNNNNNNNNN .................................... CCCTGCCGCCAAAACGCTTGCGCGGCAGGCTGGAAC 4306000 36 100.0 35 NNNNNNNNNN .................................... TTGACTATCTTGTTGCAACGTATCCTTATGGGGAA 4306071 36 100.0 38 NNNNNNNNNN .................................... TTTCCCTTTCGAAATTGCTCGATAGAGAAGAATCGCAC 4306145 36 100.0 39 NNNNNNNNNN .................................... TGCTATCGAGCATCTCTCCAGAACGTCGTCCGGTATCAC 4306220 36 100.0 35 NNNNNNNNNN .................................... ACAAGCGCAGGAAGTCAATCCATTGACCGCCGCCC 4306291 36 100.0 37 NNNNNNNNNN .................................... ATGAACTCACCCGCACCGGACACCCAATCGCGGAGCC 4306364 36 100.0 36 NNNNNNNNNN .................................... TCCTGAAGGAAAGAAGCATTCTGTACGACCTAGTTG 4306436 36 100.0 36 NNNNNNNNNN .................................... GCCGAGGGCGTCGGCGTCGAGGATTGCGCGGAGACC 4306508 36 100.0 36 NNNNNNNNNN .................................... ATCAGTACTGTGGCCGGTTTCCTGGCGCTAGCGCCA 4306580 36 100.0 37 NNNNNNNNNN .................................... TCTTCGTGGGCGACGCAAAGGCGAGCAAACTCACGCG 4306653 36 100.0 37 NNNNNNNNNN .................................... TGTTACACTTCATACTCGGAGACTGGCTTCCGCCACC 4306726 36 100.0 34 NNNNNNNNNN .................................... AGACGACAACCGCGCCGCGCAGCGCCTGGACGGA 4306796 36 100.0 35 NNNNNNNNNN .................................... CCATGCCTGTTGCTACTACCATTGCCCTATTAGCG 4306867 36 100.0 36 NNNNNNNNNN .................................... TTCGACGACCTGCGGCGGCATCTTCTCCAGCGCCTG 4306939 36 100.0 39 NNNNNNNNNN .................................... CCGTCGGAAGTTGCGCGAAGGGAAGTCGGCGCGATGATC 4307014 36 100.0 36 NNNNNNNNNN .................................... CTCGCAATCGCGCTCCACGCCGCAGACGCAGCGTTT 4307086 36 100.0 39 NNNNNNNNNN .................................... CCGATTGTGCGGCAGTTCCCGACGCCGCCATCGCTGCGC 4307161 36 100.0 37 NNNNNNNNNN .................................... TCATCAACCATCACAGACGCTCTCACCATCCGATACC 4307234 36 100.0 35 NNNNNNNNNN .................................... GTCGAACATGTGCCGCGTCCCGTCATCATCGAAAT 4307305 36 100.0 38 NNNNNNNNNN .................................... GCGACGCATGCGACGCTTGCGTGAGAAACGTGACATCC 4307379 36 100.0 37 NNNNNNNNNN .................................... TTCGTCAGCGCCTTCATCAACCATCACAGACGCTCTC 4307452 36 100.0 37 NNNNNNNNNN .................................... GCAAGCGTCGCGCACAAAACAGTTCGTAATCCGAACG 4307525 36 100.0 39 NNNNNNNNNN .................................... GCGCCGGTCGGGTGCTCGATATTGCCTTGTTGCGCCGAC 4307600 36 100.0 37 NNNNNNNNNN .................................... TTCGGCATCTGTGAGGAGGGGGCGCGAAAGGAGGCTT 4307673 36 100.0 37 NNNNNNNNNN .................................... CCTTCCCGGCTTCCCGGCGCCGGTTCCGGCTGCCGGT 4307746 36 100.0 36 NNNNNNNNNN .................................... TATTGCAATCGCATCGGTCGCGTCGTCGGCGATTGC 4307818 36 100.0 36 NNNNNNNNNN .................................... TCGATCAGTTTTGTCAAGACTTCTCGATATGCCGGA 4307890 36 100.0 34 NNNNNNNNNN .................................... TCCGTTTTTCGTCTTGTCGTCTCATGTTGTCACC 4307960 36 100.0 36 NNNNNNNNNN .................................... GCACATCGCGGATAAGCGCGTAGAGCGTTATATGCA 4308032 36 100.0 37 NNNNNNNNNN .................................... TGGGTGTTGTATGCTTGACTATGCGCGCGTTCGATGC 4308105 36 100.0 35 NNNNNNNNNN .................................... CCGGTCGGTCTTGTCGCGCGGCGCTGCGCATCGTA 4308176 36 100.0 35 NNNNNNNNNN .................................... CGCAGCGCCTGGATGTCATCCAGCGAGCGCAACAC 4308247 36 100.0 36 NNNNNNNNNN .................................... CTCAACCGCGCGCCGGAGATCGCTGAACAACTCCTC 4308319 36 100.0 37 NNNNNNNNNN .................................... TGCTCAATGCTGCTGGCGCCATTGCGAGGATGATTGC 4308392 36 100.0 36 NNNNNNNNNN .................................... TGAGATCGCGCGTCGGATTGGATGCTCGCATATCAC 4308464 36 100.0 36 NNNNNNNNNN .................................... CCGGTGTGCTATGAGCGTGATGTTCCGGGCGACGAC 4308536 36 100.0 36 NNNNNNNNNN .................................... ACAAACGCAGGAAGTCAATCCATTGACCACCGCCGA 4308608 36 100.0 35 NNNNNNNNNN .................................... CGCAGCGTGACGGCGTGGGGGGTCAGATTTACCAG 4308679 36 100.0 36 NNNNNNNNNN .................................... TGGTCGTCTCCGTCGCCGCTCCCGCCCTCCCCGGAC 4308751 36 100.0 39 NNNNNNNNNN .................................... CTACGAGTCAAATAATCGACACAATCACGCCGCGTCATC 4308826 36 100.0 37 NNNNNNNNNN .................................... GCGTATGACTGGCGCCTGAACGCGAGTAGTTGATTCC 4308899 36 100.0 36 NNNNNNNNNN .................................... TGTCCAGCCATGCCAGCCTTCTTTCCACCCAGTCTC 4308971 36 100.0 35 NNNNNNNNNN .................................... ATGAAGGTAAGTACGGCGGAGCGTATGGATTGACT 4309042 36 100.0 34 NNNNNNNNNN .................................... CGCGCTCGATAACCACGCGCGCGCGCGCGTCGTC 4309112 36 100.0 38 NNNNNNNNNN .................................... GTCATACTCATCAACGCTGATCCCCATCAACACGTTGC 4309186 36 100.0 36 NNNNNNNNNN .................................... CCTCTCGCTCACGTCGAGCGCGATACATGTCGAATC 4309258 36 100.0 37 NNNNNNNNNN .................................... TCGTAATTGATCGCTTCGCTCAGCATCCGATAGTGAT 4309331 36 100.0 38 NNNNNNNNNN .................................... GCGTAGTAACACGGTAGCAGCGTACTGTGTTCATCGTC 4309405 36 100.0 37 NNNNNNNNNN .................................... CTGTACGTGGTGTCAGCAACAAGACAGTGCCACTTTC 4309478 36 100.0 35 NNNNNNNNNN .................................... ATGTCGACAAAAATCAGCGCATCAACCTGTATTAC 4309549 36 100.0 37 NNNNNNNNNN .................................... TTTTCGAGCGAAACAAGCTTATCAACCATATCGCGGC 4309622 36 100.0 36 NNNNNNNNNN .................................... TTTTGACCGAGCAAAAAGTTTACAGAGTCAATTAAC 4309694 36 100.0 36 NNNNNNNNNN .................................... CCGAGAATCAGGGCGTTATTGTAATTCAATCCCGAC 4309766 36 100.0 37 NNNNNNNNNN .................................... ATGAACTCACCCGCACCGGACACCCAATCGCGGAGCC 4309839 36 100.0 37 NNNNNNNNNN .................................... CTTTACCACAAGACATAACACAAATATCCTTTGTAGC 4309912 36 100.0 39 NNNNNNNNNN .................................... TGTTAAACAACGTGCATTGGTTTAGAAGGACTGGTAAAC 4309987 36 100.0 35 NNNNNNNNNN .................................... TGTACAAACCTGGCAATCGGTGTAAACGGGTTGAA 4310058 36 100.0 37 NNNNNNNNNN .................................... GATTGTCTTGCGTGTCGCTCCACGAGACCTGACTCGC 4310131 36 100.0 37 NNNNNNNNNN .................................... TGCAGGTTTCGGGAAATTATCAGGAGGAACGGTAGCC 4310204 36 100.0 35 NNNNNNNNNN .................................... CGGAAGGGATGTCATCTTCTCCTTGGTCGATAGAA 4310275 36 100.0 37 NNNNNNNNNN .................................... ATCTCATCGCCAATCGATCGCTCTCGCCGCAAGTGGC 4310348 36 100.0 37 NNNNNNNNNN .................................... ACGGTTCGGGTTACAACAAGCGCCCCGGCGAGTTTGC 4310421 36 100.0 38 NNNNNNNNNN .................................... GGCGTTACGCGCCGCCGAGCGTTGCGCGCCGCGCACTC 4310495 36 100.0 36 NNNNNNNNNN .................................... CTTCAGATCGAGACGCCTCCAAAAGTTTTTTCTTTC 4310567 36 100.0 36 NNNNNNNNNN .................................... CAAGATTGTCGCCAATTCGCCTGTCTGCTCTGTGTG 4310639 36 100.0 38 NNNNNNNNNN .................................... CATGGACAACCACGCGCCAACCCCGATCGGTGGTCGTC 4310713 36 100.0 37 NNNNNNNNNN .................................... CCGTACTTACCTTCATTGGTGTACGGCGGCGAGATGC 4310786 36 100.0 37 NNNNNNNNNN .................................... TCTGTCCGAGACGGTTCACAATCGGTTCGATTTTGCC 4310859 36 100.0 36 NNNNNNNNNN .................................... CTAAGAGCATACGAAAAGAAGTTACTGCTATAAAGA 4310931 36 100.0 36 NNNNNNNNNN .................................... TGAAACTCAAGGGTGGGTCGCACCGATGTTTCCTGC 4311003 36 100.0 34 NNNNNNNNNN .................................... TCCCTTTTTCCTTGATCCAAACCTCGATGTCCGC 4311073 36 100.0 36 NNNNNNNNNN .................................... ACCCTAAGATTTTCTTCTTGTTGTTTTACGACAACA 4311145 36 100.0 37 NNNNNNNNNN .................................... AATACTATTTGAGCGTAGCAATGCGCATGCTTGCACC 4311218 36 100.0 36 NNNNNNNNNN .................................... ACGTCATGGCGCGCCGCCAAAAAGCCGCGCTAACGC 4311290 36 100.0 35 NNNNNNNNNN .................................... AGGTCGAGCGCGAGTTGCCTCACGTCCTCAAGTGA 4311361 36 100.0 38 NNNNNNNNNN .................................... TTCCGCCCGCGCTGGCGCGCCACGCGCGGGCGACGGCC 4311435 36 100.0 39 NNNNNNNNNN .................................... CGGTGCTGTTGTAGCGTCGTGACGGTGCGATTTTCTCGC 4311510 36 100.0 35 NNNNNNNNNN .................................... TTCCCGATTCGTGGTGGTCGTATGGATGGGATGAC 4311581 36 100.0 38 NNNNNNNNNN .................................... CGCGGGGTGCTCAAAAACCACGCAGAGCCCCGCTCGTG 4311655 36 100.0 39 NNNNNNNNNN .................................... CACAGGCGGCGGCGGACACAGCGATGCGTTGATGGCGCG 4311730 36 100.0 41 NNNNNNNNNN .................................... CTTTGTGATGCCGGTATCGGCGCGACAAATGTCTGATTACG 4311807 36 100.0 36 NNNNNNNNNN .................................... ACAATTATTCCTTCGGCCGAGCGTTTGCGTTCAAAG 4311879 36 100.0 38 NNNNNNNNNN .................................... ATTTATTGCGCGACGCGCAGACACGCGGCTTGATTGAG 4311953 36 100.0 39 NNNNNNNNNN .................................... CTCGTAGAGCTCGGAATGACACGCAAGGATTGCATTCAG 4312028 36 100.0 35 NNNNNNNNNN .................................... TATGACGGCGACCCCGGCTGGTATTGCCGTGACGG 4312099 36 100.0 37 NNNNNNNNNN .................................... ATCAGATCGTTGAGCCTGGGGAAGAGTACATCATAGG 4312172 36 100.0 37 NNNNNNNNNN .................................... ATACAGTAGATCATGCTGTCTGCTTGACTATGTGCGG 4312245 36 100.0 37 NNNNNNNNNN .................................... CGGCAAAACAGATCGCGCTCGCGCGCCCGCGCGCGGG 4312318 36 100.0 38 NNNNNNNNNN .................................... ATTTCAGAGAGGGCCATCCTTTCAATTACGTCGCCGGG 4312392 36 100.0 39 NNNNNNNNNN .................................... ATCAATGACCTATTCTCACCATCTTGCACCCGCGCAAGG 4312467 36 100.0 36 NNNNNNNNNN .................................... TGGTTGGTCGCTGGGGGTGGAGCGTCACGCCGCCGG 4312539 36 100.0 37 NNNNNNNNNN .................................... GTTATCAGAGCAGAAGATCGTTTCGCTCATCGATACG 4312612 36 100.0 39 NNNNNNNNNN .................................... TCAGGGAACGCGGGAATAAGCGCGCGACAAGCGCCAAAG 4312687 36 100.0 37 NNNNNNNNNN .................................... AGGTCGCAATTGGACCGCCGTCAATATGCAAAACGTG 4312760 36 100.0 1 NNNNNNNNNN ................................CCCC NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 214 36 36 TTTCCGATTTTTCGGCTCGCAGAAGAGCACTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.40,-4.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [368,754] Score: 0.18/0.18 # # Final direction: F [1.05,0.18 Confidence: HIGH] >NC_009776 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================== ====== 1009879 26 96.2 37 GAACGTATAT ........T................. ATTCTCTTTCCTCTTTTGGGTGTCTGGGAGTCCTGCG 1009942 26 96.2 44 GAGTCCTGCG .............C............ AGTGTTAGAAGGTAAAGAGATAGAGATATTGAACGTTAGAGAAT 1010012 26 100.0 40 GTTAGAGAAT .......................... AGGAAGTGGCGAACGAGGAGGAGGCCAAGAGACTGTGTGA 1010078 26 100.0 40 GACTGTGTGA .......................... TTGTGAACCCCGTTCTGGTGGTACAGGCCGAGAGCGAGGT 1010144 26 100.0 44 AGAGCGAGGT .......................... AACTTACGAACGGTGACTTAGGTACAACAGGAAGTCTAAGTCTA 1010214 26 96.2 42 TCTAAGTCTA ....................G..... AACACCACGAAGAAGTTATTGCGTAAAAAACATTACCGAAAG 1010282 26 100.0 TTACCGAAAG .......................... CGAAGCCTTC ========== ====== ====== ====== ========== ========================== 7 26 41 CTTTCTATCCTCTTTTGAGACTTCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.54%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.00,-1.90] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [73,329] Score: 0.18/0.18 # # Final direction: R [0.27,0.59 Confidence: MEDIUM] >NC_009776 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 260379 23 95.7 45 CGTGGTCTTT .....C................. TACTGTACTACCAGTTCGATCCCAAGAGATTGGAAATAAAGACGT 260447 23 95.7 40 ATAAAGACGT .............T......... TACCAATATCTCCTGCATAATTGTGCCACCGCTTAGTCAC 260510 23 100.0 45 GCTTAGTCAC ....................... CACGGCCTGGGATCTATTCAGGGCCCTGAAAGAGGGAAGGCCGAT 260578 23 100.0 44 GAAGGCCGAT ....................... CACAGAGGCAAGAAGTACGCGGAGCTAGGGGCGCTGGCGGGCGT 260645 23 100.0 44 TGGCGGGCGT ....................... CGCCCCACCCCTCGCCAAGAGGAACTGCTCAGGAAGTGGTTGGG 260712 23 100.0 43 AGTGGTTGGG ....................... CGCGGCAGCCGACGATAACCCCGGAGAGGTCGCCCCGATGATC 260778 23 95.7 44 CCCGATGATC .............T......... CACTGCCTGGAGAGCTTGGCAAGGGGAGTGCCGTGCTTGGCAGG 260845 23 95.7 45 GCTTGGCAGG .............T......... CACGAACGATAGGAAAGTGATTTATGTTTCGACTGAGCAAACAAT 260913 23 95.7 46 AGCAAACAAT .............T......... CACATGAATATATAGTAAAGCTCGCGAGGCTACTCGACTACCTCGT 260982 23 95.7 ACTACCTCGT .............T......... CACCGAAGCCT ========== ====== ====== ====== ========== ======================= 10 23 44 CTTTCTATCCTCTCTTGAGACTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.52%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [305,312] Score: 0/0.18 # # Final direction: R [0,0.41 Confidence: MEDIUM] >NC_009778 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3130823 28 100.0 32 AGGCGCAGGC ............................ TTCCACTACGCGATTGTTAACGACGACTGGGA 3130883 28 100.0 32 ACGACTGGGA ............................ CGGCTGCGCCGTGGGAACTGTTCCTCTCGCGC 3130943 28 100.0 32 CCTCTCGCGC ............................ CAATCCGCGGTCGCGTTTCAGCGCAGCAGTGC 3131003 28 100.0 32 GCAGCAGTGC ............................ CCGGTGCCGCTCACACCCACCCTGAGCACGAC 3131063 28 100.0 32 TGAGCACGAC ............................ TCTCCCACGCTGCGCCATAGTCGTTTGTGCCA 3131123 28 100.0 32 GTTTGTGCCA ............................ ATATACATCAGGTAAGCGTTGTCAACTTTCAG 3131183 28 100.0 32 CAACTTTCAG ............................ ACAATATGCTCTTTACCGTCTATGGTTTCATT 3131243 28 100.0 33 TGGTTTCATT ............................ TAACAGAGCCGCCGAAATTTTTAGCGGCCTTGC 3131304 28 100.0 32 GCGGCCTTGC ............................ CTTTGCAGGGAGGGGGCTGGGCCGGGCGATCC 3131364 28 100.0 32 CGGGCGATCC ............................ CCAGCGGCGCAGTCAACGTGATGGTGATGGAC 3131424 28 100.0 32 GGTGATGGAC ............................ TGGGGAAACGCCTCAACGTGAAAGACGGGAGC 3131484 28 100.0 AGACGGGAGC ............................ AAGAGCGAAT ========== ====== ====== ====== ========== ============================ 12 28 32 TTTCTAAGCTGCCTGTACGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,8] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [38.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [120,13] Score: 0.18/0.18 # # Final direction: R [0.18,1.51 Confidence: HIGH] >NC_009776 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =========================== ====== 413947 27 96.3 36 TCGCTAGTGC .......................C... AGCTTCTCGACGTTGACGAAGTTCAGTATCGCGCGT 414010 27 96.3 41 TATCGCGCGT .......................C... CGCATGCGGAGGAGGAGTGGTCATAAGAAGCGAAGATGGTA 414078 27 100.0 35 GAAGATGGTA ........................... GCCTTCGATGTTAAACTTCCATTCCCTTTGATGAC 414140 27 100.0 41 CTTTGATGAC ........................... TGAAGGGGGTTCTCGGGTTAGCTGAACTCTTGATATCGTAC 414208 27 96.3 42 GATATCGTAC T.......................... ATGGAAAGATAATACTGAGACCGACATGGGATTTCTGGTGTT 414277 27 100.0 TTCTGGTGTT ........................... CGAAGCCTTC ========== ====== ====== ====== ========== =========================== 6 27 39 ACTTTCCATTCTCTCTTGAGACTTCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:59.26%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-3.50,-3.40] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-1] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [455,339] Score: 0/0.18 # # Final direction: NA [0,0 Confidence: NA] >NC_009792 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2033031 29 100.0 31 NNNNNNNNNN A.A..G.A....................G AAACGCTACGGCGAACAACGGTGATCAACTT 2033091 29 100.0 31 NNNNNNNNNN ............................. ACTTGGCGTGCTGATGGGCGAAGTTCTGCGA 2033151 29 100.0 32 NNNNNNNNNN ............................. CAGTGTAATTCAGGTTCGACGCTGGTTTAACG 2033212 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 4 29 31 TTTCTAAGCTGCCTGTACGGCAGTGAACA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:51.72%AT] # Reference repeat match suggestion: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-8.90,-9.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [58.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [41,146] Score: 0.18/0.18 # # Final direction: R [0,1.36 Confidence: HIGH] >NC_009800 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2895180 29 100.0 32 AGAACAAAAA ............................. TTCCCGCGCGATTGCGATCGCCATCGTCCGAT 2895241 29 100.0 32 ATCGTCCGAT ............................. AGCCGGATGCTGATCGATACCGCGCATCACCG 2895302 29 100.0 32 CGCATCACCG ............................. CATTAATTGGGAACGCCTCATCACTGCCACCG 2895363 29 100.0 32 ACTGCCACCG ............................. CCCCACGCATTGTACTCTGTGCAGGCGTAACC 2895424 29 100.0 32 AGGCGTAACC ............................. TCCGGGCCATCCATACACCTTCTTAACCCGGC 2895485 29 100.0 32 TTAACCCGGC ............................. TTCATTATAAAAATCCATTTTGATTAAAGACT 2895546 29 100.0 32 ATTAAAGACT ............................. AGATCGGAATGGCTGCGGTCGTCGCATTTTTT 2895607 29 100.0 32 CGCATTTTTT ............................. GGTGAACCCCATCACCAAGAACATGAAGCCGT 2895668 29 100.0 ATGAAGCCGT ............................. TCTAAAAGTA ========== ====== ====== ====== ========== ============================= 9 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,6] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [144,393] Score: 0.18/0.18 # # Final direction: R [0,1.69 Confidence: HIGH] >NC_009776 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================== ====== 89078 26 100.0 42 GCGTGGCAGC .......................... GCTGTACCAATACTGGGGCGCGTTGTGTGTGCCACACGAACC 89146 26 100.0 36 CACACGAACC .......................... TCTGCACCTCCCTCACGTCCTCGTAGACGTGGTCGA 89208 26 100.0 38 ACGTGGTCGA .......................... AAAAAGGTATTCGCGATGAGCGTGGGAGCCGAGATCAT 89272 26 100.0 46 CCGAGATCAT .......................... GGTTCTACAAGCGAGAGACTCACCTGGTACTACATTACCTTGTTAG 89344 26 100.0 ACCTTGTTAG .......................... CGAGCCCTTCC ========== ====== ====== ====== ========== ========================== 5 26 40 CTTTCTATCCTCTCTTGAGACTCCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.85%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.00,-1.90] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [41.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [150,346] Score: 0.18/0.18 # # Final direction: R [0,0.45 Confidence: MEDIUM] >NC_009800 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 985984 28 100.0 33 TAGTATTTGA ............................ AACCTACCGTCTTGGCTAGCGGTTGCAGCGAAC 986045 28 100.0 32 TGCAGCGAAC ............................ GGAACAATCTTGCAAAGGCTGTGAAAGTTGGC 986105 28 100.0 GAAAGTTGGC ............................ TTCACAGGTAACATACTCCACCCACCAT ========== ====== ====== ====== ========== ============================ 3 28 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [211,442] Score: 0.18/0.18 # # Final direction: F [1.24,0.18 Confidence: HIGH] >NC_009776 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================== ====== 952490 26 100.0 39 GAAGGGCTCG .......................... TGTTAAACCTAGTTCTAGCTCTCGACACAATTATGTTTT 952555 26 100.0 37 ATTATGTTTT .......................... GATATCGCCGATTTACGGGAGGGAAGGAGAATTCCTA 952618 26 100.0 46 AGAATTCCTA .......................... GTGAGGTGAAGGTACTGCCTGTTGGCGGAGGCCATCAGCATGTCCT 952690 26 100.0 AGCATGTCCT .......................... TTGACGTTATATAC ========== ====== ====== ====== ========== ========================== 4 26 40 GTGGAGTCTCAAGAGAGGATAGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.85%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-1.90,-2.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1226,216] Score: 0.18/0.18 # # Final direction: F [0.18,0 Confidence: MEDIUM] >NC_009801 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3056470 29 100.0 32 CCAGTGCGCC ............................. AAAACCAAACTTCTCCATAAATTCCATAGCCG 3056531 29 100.0 32 TCCATAGCCG ............................. ACGCGCGTACCGGATCGCGGACAACAAATTGC 3056592 29 100.0 32 AACAAATTGC ............................. CTGAAACCAGTTGGCTCGTTGTTCTTCTTTGG 3056653 29 100.0 33 TCTTCTTTGG ............................. GCTCTTCAACGGTTAGCTCAGGAGCTTCTTCTC 3056715 29 100.0 32 GCTTCTTCTC ............................. TTTTTTTGTCGCATCCAGCCGTATTTTTTCGC 3056776 29 100.0 32 ATTTTTTCGC ............................. TCGCCCATGTAACAGAAACGGGGATTTTAATT 3056837 29 100.0 32 GATTTTAATT ............................. TCGGCCAGCGTCCAGGCTGGCACCCGATATTC 3056898 29 100.0 32 CCCGATATTC ............................. GGGGCTTTTTTATATCCGCGCCACGCTCGGCG 3056959 29 100.0 32 ACGCTCGGCG ............................. TTGTCACGAACACATAGCAACTAGGTAACCAC 3057020 29 100.0 32 AGGTAACCAC ............................. AGTATTAACTGCGGTGGCAGTGAGGCCAATAG 3057081 29 100.0 32 AGGCCAATAG ............................. ATACCGCAGCAAATTACGGTTCCAGAAACGCG 3057142 29 100.0 32 CAGAAACGCG ............................. TTCACGCCAACGCAGAGGCGGGCCGCGTTAAT 3057203 29 100.0 CCGCGTTAAT ............................. ACTAAGCATA ========== ====== ====== ====== ========== ============================= 13 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [83,391] Score: 0.18/0.18 # # Final direction: R [0,1.69 Confidence: HIGH] >NC_009776 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================== ====== 915468 26 100.0 41 GAAGGCTTCG .......................... GTACTAATGCCGTATTACCAAATCTAAACGATAGGCGAGAT 915535 26 100.0 38 TAGGCGAGAT .......................... TGTACTTGTGCTACTGATGAAGAAGATGGGGTGAGAGC 915599 26 100.0 GGGTGAGAGC .......................... AACAGGGTCA ========== ====== ====== ====== ========== ========================== 3 26 39 GTGGAGTCTCAAGAGAGAATGGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.85%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-3.40,-3.50] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [58.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [546,480] Score: 0/0.18 # # Final direction: F [0.27,0 Confidence: MEDIUM] >NC_009801 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3082931 29 100.0 32 NNNNNNNNNN T..........................T. AACATCGGAAACGGCTTCGCGGCGGCGGCGTC 3082992 29 100.0 32 NNNNNNNNNN ............................. GTGACAAATCTTTGCGGGCAATGCCGAACTTC 3083053 29 100.0 32 NNNNNNNNNN T............................ GACACTGTAAAAGAGTGGGTAAAGCCTGAGAA 3083114 29 100.0 32 NNNNNNNNNN ............................. AGGGGTATTAGACGGAATAAGACAGGCCGCGC 3083175 29 100.0 32 NNNNNNNNNN ............................. TATTACCTGGACGTTTGCAGAATTGAAGATCG 3083236 29 100.0 32 NNNNNNNNNN ............................. ATAAACTTTCCGCCGATCTCAAGAGCGGCACG 3083297 29 100.0 32 NNNNNNNNNN ............................. CTCAAAAAACTTGAAATCAAAACCGGTGAAGA 3083358 29 100.0 32 NNNNNNNNNN ............................. TTATTTGACCTCGTTGATAATCCCACAGATCC 3083419 29 100.0 32 NNNNNNNNNN A............................ ATATCAGCGTTATCAACCGCGATTTCCGTCTC 3083480 29 100.0 32 NNNNNNNNNN ............................. CCCGTTTGGGGGTACGAGTAGGGATCATTGGC 3083541 29 100.0 32 NNNNNNNNNN ............................. GCGGCCCCATGTCAGAGAATAATTCTTTCTCA 3083602 29 100.0 32 NNNNNNNNNN ............................. TTCGGTTATGTGATCGAGCATATGCGCGAAAG 3083663 29 100.0 32 NNNNNNNNNN ............................. CATACACCCCGGGCGCTATATGCATCTGCTCA 3083724 29 100.0 32 NNNNNNNNNN ............................. TGCTCCGGAGATAACGAATATAAAAATGACGC 3083785 29 100.0 32 NNNNNNNNNN ............................. TTCAGGGGAGTTCGCAAGACCAGCGGAATCGG 3083846 29 100.0 32 NNNNNNNNNN ............................. AGTTGTGATACGCATTGCACTCTCCTGAACCT 3083907 29 100.0 32 NNNNNNNNNN ............................. GCTGTATTGTTATTGAAAGATCACCTCGCCCC 3083968 29 100.0 32 NNNNNNNNNN ............................. GGTAGACGCTTTCACTTCACCGGAAAATGAGC 3084029 29 100.0 32 NNNNNNNNNN ............................. CGGCACTGGCAGCCACACACACCCGCATACAC 3084090 29 100.0 32 NNNNNNNNNN ............................. ATCCACATTTCCGCCGTTATGAATCGGTATTC 3084151 29 100.0 32 NNNNNNNNNN ............................. GCCACGCGCCCACATTTTTAAATTTTCTGAAT 3084212 29 100.0 32 NNNNNNNNNN ............................. AACATCAAAAATGGTACAACCTAGGCACTATT 3084273 29 100.0 32 NNNNNNNNNN ............................. CGAGTAGCCAACGAGCAGGGATTTGTCGGCAG 3084334 29 100.0 32 NNNNNNNNNN ............................. TCAGACATCTACAACTCAAACGCCAGTTGAGG 3084395 29 100.0 32 NNNNNNNNNN ............................. TTTTCCGGGATGTGCACCTGTGCGCCGGGCAA 3084456 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 26 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [640,341] Score: 0/0.18 # # Final direction: R [0,1.65 Confidence: HIGH] >NC_009839 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1440719 36 97.2 30 CCACTAGGGT -................................... TGATTTATTAGTAACCCATCAAGTTGGCTT 1440785 36 100.0 30 AAGTTGGCTT .................................... GCACCTGTTTTTGATTGAACAAAACAACCA 1440851 36 100.0 30 AAAACAACCA .................................... GTATTTTGATACTCTGCTTCTTGGTCTTGA 1440917 36 100.0 30 TTGGTCTTGA .................................... TGCACTGAAATAAATGAGTTTATAGCAAAT 1440983 36 100.0 30 TATAGCAAAT .................................... GCTTTAGGAAATGCTTTAAAACGCTTTGGA 1441049 36 100.0 30 ACGCTTTGGA .................................... ATTTGCAAGGTATATAAAAAATTTGATTTT 1441115 36 100.0 30 ATTTGATTTT .................................... GATTGGAATTTAGATGAGATTAGAGAAATA 1441181 36 100.0 TAGAGAAATA .................................... AGATATTTA ========== ====== ====== ====== ========== ==================================== 8 36 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:77.78%AT] # Reference repeat match suggestion: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [118,146] Score: 0/0.18 # # Final direction: R [0.5,0.68 Confidence: LOW] >NC_009776 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 955649 24 100.0 39 NNNNNNNNNN ........................ CTTGTACTGTGCTAGCTGGGCCGGAGAGCTCAGTTGCTC 955712 24 100.0 38 NNNNNNNNNN ........................ ACTTGGTTGACGACCTCGTCGAGCTTGTCGTACGCTTG 955774 24 100.0 39 NNNNNNNNNN ........................ ATGTCGTCACAGTGAAATACATACACCTTCTGCAAATCT 955837 24 100.0 39 NNNNNNNNNN ........................ ATGTCGTCACAGTGAAATACATACACCTTCTGCAAATCT 955900 24 100.0 39 NNNNNNNNNN ........................ ATGTCGTCACAGTGAAATACATACACCTTCTGCAAATCT 955963 24 100.0 39 NNNNNNNNNN ........................ GTTCTTTATCATTCCATTCCTGCCATACTCTGAGAAACA 956026 24 100.0 38 NNNNNNNNNN ........................ CCGGTGCACCACACGTTTTCGCCTTCGACCTCGTCCCC 956088 24 100.0 37 NNNNNNNNNN ........................ CTGGCGTGATGACGGTCGTACGATGACTATCCTAGAA 956149 24 100.0 37 NNNNNNNNNN ........................ AGAGCACTATCGAACAGATAGACCTCAACGTTTTCAG 956210 24 100.0 39 NNNNNNNNNN ........A............... TGCTAATCTGTTCCAAGGGAACGTCGACGCCATGGCGAA 956273 24 100.0 38 NNNNNNNNNN ........................ TGGGTTCTTTCTGCCACCACCGCACACACCTCATGAGC 956335 24 100.0 38 NNNNNNNNNN ........................ CTAGTGTACGCTTCACCGTGTGAAGACATAATGAGCAG 956397 24 100.0 36 NNNNNNNNNN ........................ CTTTGCATTTCCTTCGGCAATGTAGCTCGCTATCGC 956457 24 100.0 38 NNNNNNNNNN ........................ CGAGGGAATGAGCGGAGGGAAGCGGGATGAGGAGCGAG 956519 24 100.0 38 NNNNNNNNNN ........................ ATTAGAAGCACCACATGAACGAATCGGTGTGCATCAGG 956581 24 100.0 37 NNNNNNNNNN ........................ TATGAATAACGGGTCCTCGATTACTTCTGGGTTGTCT 956642 24 100.0 39 NNNNNNNNNN ........................ CAATGGCTTACCCAACACGGCCTGAGCGAAGAGGTCCTT 956705 24 100.0 37 NNNNNNNNNN ........................ TTTGTCGAGCTCTTGCCAGGATAGACTAGGACAACCG 956766 24 100.0 38 NNNNNNNNNN ........................ GGGTCTGCTGGCAGATCGGCGATGTCATCGCAATGGTA 956828 24 100.0 42 NNNNNNNNNN ........................ TGAATGGCGGGTGCGGGAGATGGTTGAGGAGAAGATGGTAGT 956894 24 100.0 37 NNNNNNNNNN ......................G. TAAGTAATATTCTATTAGCATCTTCTTCAAGTTTTCA 956955 24 100.0 37 NNNNNNNNNN ........................ TATAAGGGCTATGGCATGATGGTAATGATGATAATGA 957016 24 100.0 41 NNNNNNNNNN ............A........... TCCATATCTACGCCCTTGTCATACATTTCCAAGGCCTTGAA 957081 24 100.0 1 NNNNNNNNNN ..........T...A..GC.T... NNNNNNNNNN ========== ====== ====== ====== ========== ======================== 24 24 38 GATTAAACGAAAGAGAACTGCAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.50%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [231,172] Score: 0/0.18 # # Final direction: F [0.41,0 Confidence: MEDIUM] >NC_009778 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2777861 29 100.0 32 NNNNNNNNNN ....................C........ TTGATCATCTATCGCGGCGAGGTGCATCACCG 2777922 29 100.0 32 NNNNNNNNNN .................TA.......... AAAAGCCTACAGGCCGGTCAGGACGCAGGCGG 2777983 29 100.0 33 NNNNNNNNNN ............................. GCCAGTATTTGCACGGTGTAGGTAAAAACGTCG 2778045 29 100.0 32 NNNNNNNNNN .........T................... ACGCCTTCGGGCGGGCTGACAAGCGTCGCCGT 2778106 29 100.0 32 NNNNNNNNNN ................T............ GTCTGGTGTGGCGTAGGGCATGGTTTACTTCC 2778167 29 100.0 32 NNNNNNNNNN ............................. GAGCTGCTCAAGTTTAAAACGCCGCGAGGGAT 2778228 29 100.0 32 NNNNNNNNNN ............................. AATTCAGCTGTTCCGCGCTTAACCCCCGTCCA 2778289 29 100.0 32 NNNNNNNNNN ............................. CAGCACGCCGCGAACGTCGGGATCGTTAATAG 2778350 29 100.0 32 NNNNNNNNNN ............................. TCCTCTTCTACGGCCTGTTGGCTACGGTTATC 2778411 29 100.0 32 NNNNNNNNNN ............................G GCGTCACACGTGCCTGGACGTTGAGAAACTGG 2778472 29 100.0 32 NNNNNNNNNN ............................. TGTCTGCGTAGTGCCGGGGATCTGGTTGTAAT 2778533 29 100.0 32 NNNNNNNNNN ............................. ATACGGTAAGCGTCACCAGAGCGTTAAAGAAC 2778594 29 100.0 32 NNNNNNNNNN .......................A..... TCGAAATCCCTTCACGCACGTTCGCCACCCTT 2778655 29 100.0 32 NNNNNNNNNN ................A............ GGGGTAAGTAACGACAACGTCCGACCCGTAGT 2778716 29 100.0 32 NNNNNNNNNN ................A............ AGGCGTTTGCACCGGGAACCGCCAGCGCCATA 2778777 29 100.0 32 NNNNNNNNNN ............................. GAGTTCACACACGCTACCTGGCACGAAATAAA 2778838 29 100.0 32 NNNNNNNNNN ............................. GATAATATTGCGATCGAGTTGCTCAGGCACCG 2778899 29 100.0 32 NNNNNNNNNN ...........................T. CGGATCGTCACCACGTGTAAAGCGAAAGTGAT 2778960 29 100.0 32 NNNNNNNNNN ............................. AGAAATATCACCGAAAACCCCTCCCTCTGCCG 2779021 29 100.0 32 NNNNNNNNNN ............................. GTTCGCAGCCCAGCTGCGTCAAGGTGGTGCCG 2779082 29 100.0 32 NNNNNNNNNN ............................. AGAAACACCTCTGTTGGTGATAACACGCTGCG 2779143 29 100.0 32 NNNNNNNNNN ..........................T.. TTCCAACGTAATTAGTACTGCCCGTGCAATCC 2779204 29 100.0 32 NNNNNNNNNN ..........................T.. TCCATCATTTTCACTGCGTTAAACACATTTTC 2779265 29 100.0 32 NNNNNNNNNN ..........................T.. GGTTGTGTACGCGTTCTCTCGGAGTCGGTAGG 2779326 29 100.0 32 NNNNNNNNNN ..........................T.. GATGCGGTGACAAAGGCTCTGTCTGCTGCGGG 2779387 29 100.0 32 NNNNNNNNNN ............................. CCGGGCGCAGGCCGCATGGCGCTTTGCGCGAC 2779448 29 100.0 32 NNNNNNNNNN ............................. CCAAACTCGATATCGACAGTGATACCGACGCG 2779509 29 100.0 32 NNNNNNNNNN ............................. GCGTGATTCCTGTCGTTGCCGTGCAGAAGGGG 2779570 29 100.0 32 NNNNNNNNNN ............................. CAAACGCAGGGATCTACCGCCCGAACGATAAA 2779631 29 100.0 32 NNNNNNNNNN ............................. TTGCACCGGATGCCAAAACGGCGTTAGTGGCG 2779692 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 31 29 32 CGGTTTATCCCCGCTCGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [107,98] Score: 0/0.18 # # Final direction: R [0,1.42 Confidence: HIGH] >NC_009778 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2806059 29 93.1 32 TGGCCGTTAT .................T.........G. GAGCAGGTGGAGCTGGCCGACGCGCCGGAAGA 2806120 29 96.6 32 CGCCGGAAGA ...........................G. AACACAAACTGACATCATTAAATGTAGACACT 2806181 29 100.0 32 TGTAGACACT ............................. CTCGCCGGGTGGCAACTCCTGTGTATTAGAGG 2806242 29 100.0 32 GTATTAGAGG ............................. CTCACCGGTATATCGTTCAGGCCGAACCAAAT 2806303 29 100.0 32 CGAACCAAAT ............................. TGTGGCCCATAAAGACCTCTTTAAAAGATGCT 2806364 29 100.0 32 AAAAGATGCT ............................. TGAGAGATAATGACGAACCGTGCGAGGGTCTA 2806425 29 100.0 32 CGAGGGTCTA ............................. GGAAGCCGGAGTGGATCGAATCGGCGGTATTA 2806486 29 100.0 32 GGCGGTATTA ............................. GAAGTAGATGCTTTTGCCGCTGGCCCACATTT 2806547 29 100.0 32 GCCCACATTT ............................. ACCAGCAAGCGCTGTAATGACCTGGTCAGCGG 2806608 29 100.0 33 TGGTCAGCGG ............................. GCGAAAAACTACCGTCACATTCAACGCGCTAGC 2806670 29 100.0 32 ACGCGCTAGC ............................. TTACACTCTCGCGGCGAAAACGGAAGCGTGCG 2806731 29 96.6 32 GAAGCGTGCG ..........................A.. TGCTTATTTGCTGTCGCCGCTTTCCGAAGTGA 2806792 29 100.0 32 TCCGAAGTGA ............................. GAGGAATGCATAAGCGTTAGGGTTGCTAAGCG 2806853 29 100.0 32 TTGCTAAGCG ............................. GATGCACTGAATCGGGTCTATTTCGTAAATCT 2806914 29 96.6 32 TCGTAAATCT ...........................G. CCGCGTACTGAATGAAACCCCCGCCACCGACG 2806975 29 100.0 32 GCCACCGACG ............................. TCGGCGTCGGTTTTGCCGTCAGTAGGCTTACC 2807036 29 100.0 32 TAGGCTTACC ............................. TTCGCCGCTCTTACCTCTTCGCTTAACTGTAA 2807097 29 100.0 32 TTAACTGTAA ............................. CCCTGGTTCTGGCGCTCAACCTCGGCAGCACG 2807158 29 100.0 32 CGGCAGCACG ............................. CCTGTAAGGTGCTGCGGGAGCAGCTGGGGAAA 2807219 29 100.0 32 GCTGGGGAAA ............................. TCACCTATGCCCGCCGCCGATATGGAATCCGG 2807280 29 100.0 32 TGGAATCCGG ............................. CCCTAATCCGATTAAACCCGCGCCACCCGCCA 2807341 29 100.0 32 CCACCCGCCA ............................. ACAGGTAATCACGTACCGCGCCGTCAGCGACG 2807402 29 100.0 32 GTCAGCGACG ............................. CACGCCAAGCCTGGTGCCACTAACCGTACCGG 2807463 29 100.0 32 ACCGTACCGG ............................. GGAGAGTGGGGAACGCCAGGTGAGCTACATCA 2807524 29 100.0 32 AGCTACATCA ............................. TCGGCAACGACGGACGGCGCAACGCCGTTTAC 2807585 29 100.0 CGCCGTTTAC ............................. ACTAAAAGT ========== ====== ====== ====== ========== ============================= 26 29 32 CGGTTTATCCCCGCTCGCGCGGGGAACAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [51.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [267,215] Score: 0/0.18 # # Final direction: R [0,1.42 Confidence: HIGH] >NC_009784 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1398168 28 100.0 32 NNNNNNNNNN ............................ GGTTGCGACCGCTTGCGCTCATCGCGGTATGA 1398228 28 100.0 32 NNNNNNNNNN ............................ AAATAGGTCGTGGCTTGCATCCTTTCGTTATC 1398288 28 100.0 32 NNNNNNNNNN ............................ CAACGGTGTAGTGGGTGCAATCAAGACTCAAA 1398348 28 100.0 1 NNNNNNNNNN T.G.............T...AGT.C.T. NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 4 28 32 GTAAACTGCCGAGTAGGTAGCTGATAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:57.14%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.60,-1.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [83.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [130,160] Score: 0/0.18 # # Final direction: F [1.05,0 Confidence: HIGH] >NC_009785 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1422480 36 100.0 30 NNNNNNNNNN CC.AAT..C.C......................... TGAACTGCTTAGACTTCATGTCTACAACTA 1422546 36 100.0 31 NNNNNNNNNN .................................... CCATTTGATGTGATTGTGCTTGAAGGTCCTA 1422613 36 100.0 30 NNNNNNNNNN .................................... ACAAAGAAACAAAAACCATGAATGGAATGG 1422679 36 100.0 30 NNNNNNNNNN .................................... AAGGTCGATGGAATAGGTAGGAGAGGTTTT 1422745 36 100.0 30 NNNNNNNNNN .................................... TTTTAAATAATCGGGCATACTATCACCGAC 1422811 36 100.0 30 NNNNNNNNNN .................................... GATACTCGAAGCCATCAATATACATATGTG 1422877 36 100.0 30 NNNNNNNNNN .................................... ACAAAGAAGAATACAACAACTTTGTGAATA 1422943 36 100.0 30 NNNNNNNNNN .................................... CAAGTCCGAGGTCAGATTCAAGGGTTTGTA 1423009 36 100.0 29 NNNNNNNNNN .................................... CGAGGAAGTCAAAGCGGTTACCGTTTACG 1423074 36 100.0 31 NNNNNNNNNN .................................... CACTACTACTACTGTAGACCCTCAAACAATG 1423141 36 100.0 30 NNNNNNNNNN .................................... TATCAACGCTATCTTACTTGATGATATTGA 1423207 36 100.0 30 NNNNNNNNNN .................................... TTATGGTTCTAGTATAGCATGGTAAGAAAG 1423273 36 100.0 30 NNNNNNNNNN .................................... ATTTACGCATAAAATGTAAAATGGATTGTG 1423339 36 100.0 30 NNNNNNNNNN .................................... ACAATTTATTATCACCTTTAAAACATATCC 1423405 36 100.0 30 NNNNNNNNNN .................................... AGATTGCTTGTAATAATCGTACAATTACGG 1423471 36 100.0 30 NNNNNNNNNN .................................... TAATCGTAACATAAAATACCAAACCTACGA 1423537 36 100.0 30 NNNNNNNNNN .................................... AATGAAATGAGCAGGCCACTTTCTAGTTTG 1423603 36 100.0 30 NNNNNNNNNN .................................... GACCAGGAGATGGCAGAAAAACGCTGGTTA 1423669 36 100.0 30 NNNNNNNNNN .................................... CCCGCTGTTGCAGAGTGTAGTGACGTACTA 1423735 36 100.0 30 NNNNNNNNNN .................................... CAACCTAGAAGAAGGTCACGACTACCCTGT 1423801 36 100.0 30 NNNNNNNNNN .................................... CTGCCATCATCTCATCTACATCAATAACAT 1423867 36 100.0 30 NNNNNNNNNN .................................... GCATTTCGTTAGCTTGCTCTTGATAGACTT 1423933 36 100.0 30 NNNNNNNNNN .................................... TCGGGACTAAATTTGAAGGCTATCTGAATG 1423999 36 100.0 30 NNNNNNNNNN .................................... AGAGTCGTTTCAATTCGCTTTGCTCAAGGA 1424065 36 100.0 30 NNNNNNNNNN .................................... ATACGGTGAAGGTGAAGTTGATAAAGCTGA 1424131 36 100.0 30 NNNNNNNNNN .................................... TGTGACTTATGTACGACCAGATGACAATCC 1424197 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 27 36 30 GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:69.44%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [63,71] Score: 0/0.18 # # Final direction: R [0.37,0.41 Confidence: LOW] >NC_009800 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2920652 29 100.0 32 NNNNNNNNNN AT.G..........T.A............ TCGTCCAGACTGAATACGTTGTCCCAAAATCT 2920713 29 100.0 32 NNNNNNNNNN ..............T.............. CTATTGATGAGGTGCACCATCAGAAGCGAGAT 2920774 29 100.0 32 NNNNNNNNNN ..............T.............. GACGTACAGATTGGCTGCGGCACCTCAAACAC 2920835 29 100.0 32 NNNNNNNNNN ............................. TTAATTCGCGTACCTGCGCATCCATTGCCGCG 2920896 29 100.0 32 NNNNNNNNNN ............................. CGCAATCATGTTTTTCATTGGGTTTACGTCCT 2920957 29 100.0 32 NNNNNNNNNN ............................. TTTTTATGACTGAATCCACTACGCCTTCATAG 2921018 29 100.0 32 NNNNNNNNNN ............................. TTTACGTCGTTGATGACATCGTTCAGGTGTTT 2921079 29 100.0 32 NNNNNNNNNN ............................. GTGATTTTCGTACCCGGCGCGATCGCGATATG 2921140 29 100.0 32 NNNNNNNNNN ............................. GATAACCGCTTCGCGGTCAATATCTGCCGCAC 2921201 29 100.0 32 NNNNNNNNNN ............................. GCCCATCGCCTGCGCCACACTGTTAAAAAGTT 2921262 29 100.0 32 NNNNNNNNNN ............................. TCATTCGCAATCATCCACTGACTCAGGGGCTG 2921323 29 100.0 32 NNNNNNNNNN ............................. ATCGCCGGATATCCACGCCCAGTTACCCAGAA 2921384 29 100.0 32 NNNNNNNNNN ............................. ATATGCCTGGCTTAAATCGTTTAAATATGTTG 2921445 29 100.0 32 NNNNNNNNNN ............................. TTGTGCCAAAGCGGGCCGTTTAAGGGTGTTAC 2921506 29 100.0 32 NNNNNNNNNN ............................. AAGCCGTGGCGCGGGTCCCCGCTGGCGTCAAC 2921567 29 100.0 32 NNNNNNNNNN ............................. GAGAGACGAAGCATGAAAAAATTAATAATATC 2921628 29 100.0 32 NNNNNNNNNN ............................. TCAGGGATTTTTAATTGATGATATGCAGATAC 2921689 29 100.0 32 NNNNNNNNNN ............................. ACTGGCGCTGGCGGGGCGGCGTAGAGCGGTAA 2921750 29 100.0 32 NNNNNNNNNN ............................. GGTTCAAATCCTCTCGTGCCGACCAAAAACAC 2921811 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 20 29 32 CGGTTTATCCCCGCAGGCGCGGGGAACTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [45.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [47,341] Score: 0.18/0.18 # # Final direction: R [0,1.23 Confidence: HIGH] >NC_009828 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1131044 30 100.0 36 NNNNNNNNNN .............................. AAATTTTGGCCGTTTTCCCGGATGCGGTGGAGGAGG 1131110 30 100.0 36 NNNNNNNNNN .............................. CCTATATAAAGACCTTCTGTGAATGCTTGTAGTGGA 1131176 30 100.0 36 NNNNNNNNNN .............................. AGTGCTAATCCATATATCTCGCATGAATTTTTAGAG 1131242 30 100.0 36 NNNNNNNNNN .............................. AATCCCTCCTATTCTTCTTTACTTGCCCAAGGGCAT 1131308 30 100.0 37 NNNNNNNNNN .............................. CAGGATATAACACCACGGCAATAGGTTACTATACACC 1131375 30 100.0 37 NNNNNNNNNN .............................. TACAAGTTGCAGAAGACTTATCACCTGGCGAACAGCC 1131442 30 100.0 36 NNNNNNNNNN .............................. ATATCACAATATATTTCTGATGAATCCTTGGTTGTA 1131508 30 100.0 36 NNNNNNNNNN .............................. CTCTTTTTCAACTGGGCAATACTCAAAGTAGGAGGT 1131574 30 100.0 36 NNNNNNNNNN .............................. TAAGCTGAAATAAGGTCTTTCAGGTTAGCTACTTGT 1131640 30 100.0 36 NNNNNNNNNN .............................. CATGGAAAAAATAATTATCCCAGTAAGTAAATCTCT 1131706 30 100.0 36 NNNNNNNNNN .............................. GTATAGATCCTCAACATCGTCATAGATCCTTTCATC 1131772 30 100.0 35 NNNNNNNNNN .............................. AAGTCGTCAAGATCCTCGTCCTCATATTCCTGTCC 1131837 30 100.0 35 NNNNNNNNNN .............................. GTTTCTACCGCGTTTGTGTTCTTCAAAAATCGGTA 1131902 30 100.0 35 NNNNNNNNNN .............................. TCGGCATGATGACCTGTTCGTACACCGCATCTTTA 1131967 30 100.0 36 NNNNNNNNNN .............................. CTTTCTAACTCCTTTTGTAAGCTTTTTCTTTTTGTT 1132033 30 100.0 37 NNNNNNNNNN .............................. AATCTTTTGGCAATAAACGCCAACAAAACCATGAAGA 1132100 30 100.0 35 NNNNNNNNNN .............................. GTTTCTACCGCGTTTGTGTTCTTCAAAAATCGGTA 1132165 30 100.0 35 NNNNNNNNNN .............................. TCGGCATGATGACCTGTTCGTACACCGCATCTTTA 1132230 30 100.0 36 NNNNNNNNNN .............................. CTTTCTAACTCCTTTTGTAAGCTTTTTCTTTTTGTT 1132296 30 100.0 37 NNNNNNNNNN .............................. AATCTTTTGGCAATAAACGCCAACAAAACCATGAAGA 1132363 30 100.0 36 NNNNNNNNNN .............................. CGCTCTCCTTGTACCAAAATCTCAGTTCCAGCCTTG 1132429 30 100.0 36 NNNNNNNNNN .............................. ACATTCTGGACATTAAGAGAATGCCAGGAAAGAATA 1132495 30 100.0 36 NNNNNNNNNN .............................. TAGCAAAGTCCAAAACTAACTCACCCTCATTTGTAT 1132561 30 100.0 36 NNNNNNNNNN .............................. AACATAATCACCGCATAAAGAATAACCATATATGGT 1132627 30 100.0 37 NNNNNNNNNN .............................. TTAAGATTTGAATTGGTTCAAAAATTGAAGTGGTACA 1132694 30 100.0 39 NNNNNNNNNN .............................. TTGGAGTATACGTATAAGTTGATCCAGTGATTGATACCG 1132763 30 100.0 37 NNNNNNNNNN .............................. ACGCACGGGCATAAAGAGCGAATTCCGTGGAGAGTTC 1132830 30 100.0 36 NNNNNNNNNN .............................. ATAGCAGGAGGAAGAATAAAAAGTATTCATTCGATT 1132896 30 100.0 34 NNNNNNNNNN .............................. ATCGATTGAGAGATCAGCTTTTAAAAACGGCCGA 1132960 30 100.0 36 NNNNNNNNNN .............................. ATGTTGTGCGAGCCCGAGAGATTCCACTTGATCCCT 1133026 30 100.0 36 NNNNNNNNNN .............................. ACGGGAGTATCGAAAAATTCACTCTCAGTAACACTT 1133092 30 100.0 37 NNNNNNNNNN .............................. GAACGTTGCAAAAAAATCCAGAATTTCGCCGTGTGTT 1133159 30 100.0 38 NNNNNNNNNN .............................. AGTGGTTGGCAAACACCAAAAACAAATTGGGATTATTA 1133227 30 100.0 36 NNNNNNNNNN .............................. CAAATTTAGAATTTTTATTACGTTAACTTTTTCTGA 1133293 30 100.0 36 NNNNNNNNNN .............................. CTTCTTATAATAAAATTCCACTTTGGTTGTGGGATA 1133359 30 100.0 36 NNNNNNNNNN .............................. CATAATGGTGAATATGGTTGGCAGTCTATTTTCGTT 1133425 30 100.0 36 NNNNNNNNNN .............................. TTGTTGTACACACTCATGAACTCCGCCATGATTTCA 1133491 30 100.0 36 NNNNNNNNNN .............................. TTGGCTGTGTAGGTTGTGTAGGTTGTGGACTTAGTT 1133557 30 100.0 39 NNNNNNNNNN .............................. ATTGCATACGCAGAAACATATTTCGGATACAACTTATAT 1133626 30 100.0 36 NNNNNNNNNN .............................. TTTGGTCTGGTGTGTAGTTTGCATAAAGTAATGGAT 1133692 30 100.0 36 NNNNNNNNNN .............................. TAAAAAACATAACAACTGCAATACCTGCAATAACCC 1133758 30 100.0 35 NNNNNNNNNN .............................. CTTCTTTAGTTTCTTCCTTCTTCTCTTCAACCTTC 1133823 30 100.0 38 NNNNNNNNNN .............................. AAGGTTAGAACTAATAACAGAATAGAACTTCTTGAAAC 1133891 30 100.0 36 NNNNNNNNNN .............................. AACATATTCTGGTGTTTTTGCTTTTGCATTCTCTAT 1133957 30 100.0 35 NNNNNNNNNN .............................. CTTCTTTAGTTTCTTCCTTCTTCTCTTCAACCTTC 1134022 30 100.0 38 NNNNNNNNNN .............................. AAGGTTAGAACTAATAACAGAATAGAACTTCTTGAAAC 1134090 30 100.0 36 NNNNNNNNNN .............................. AACATATTCTGGTGTTTTTGCTTTTGCATTCTCTAT 1134156 30 100.0 36 NNNNNNNNNN .............................. TAATGCGGCTCGTTGTAATAGCCTTTTTCACGAACA 1134222 30 100.0 36 NNNNNNNNNN .............................. TTGCGAAGGACGTAGAGGAAAAGGATTGGAGTAACT 1134288 30 100.0 37 NNNNNNNNNN .............................. TTCCAACCATCCTTTTCTTTGCTATTGCATGCTCCGT 1134355 30 100.0 38 NNNNNNNNNN .............................. AAAAATATCATCCAGATAAATTAGGTAAAGAATATGAC 1134423 30 100.0 36 NNNNNNNNNN .............................. AAAATCGATCCTGCAGGTTTTGCAAAATTTTTATCC 1134489 30 100.0 37 NNNNNNNNNN .............................. GTACCTAAAAAATCTGATGCATCTGGATCCCATTCTG 1134556 30 100.0 1 NNNNNNNNNN ...................ATATCA...CT NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 54 30 36 GTTTCAATCGAACCTTAGAGGGATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [488,123] Score: 0.18/0.18 # # Final direction: R [0.96,4.5 Confidence: MEDIUM] >NC_009828 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 205528 30 100.0 38 GTGTGGCTAA .............................. CTTGACTATCTCATCTGCGTTCGGTATACCTGGAGTTA 205596 30 100.0 36 CCTGGAGTTA .............................. TCGCCTTGCATACACTGGGACGGATTGGAAAACTTT 205662 30 100.0 37 GGAAAACTTT .............................. CAGTTCAGAAGCTTCAAGAGCAATATCAAACTGCTGT 205729 30 100.0 37 AAACTGCTGT .............................. AAGATTTGAAAAAGTTGAGGGATGGTATTGTGTTCAT 205796 30 100.0 37 TTGTGTTCAT .............................. GTTTCCGTATTTGTTTGTGTCTGTGTCTGGACTTGTT 205863 30 100.0 36 TGGACTTGTT .............................. TAGTGGTATCAAAATTTGTTTATATCACCCAGACAG 205929 30 100.0 37 ACCCAGACAG .............................. GGCGGATAACTCAATAAATTTTGAGGAGGTTTTCATA 205996 30 100.0 37 GGTTTTCATA .............................. TGTGGTGGTATAGTGTGGTTAGACGGGAAGGTATACA 206063 30 100.0 36 AAGGTATACA .............................. CACGCAAGAAGCCTTTGTGTCCTTCGTTGCTGCGAT 206129 30 100.0 38 TTGCTGCGAT .............................. TCATAAGATGTTGGTGTGCTTATCTCATTGAGTATTGT 206197 30 100.0 36 TGAGTATTGT .............................. CTGATATGAGCATTGCTATTCCCAACACAACCACAA 206263 30 100.0 36 ACAACCACAA .............................. AACTGCAAAATCTGGGAGAATTAAATTGTTTTCTCC 206329 30 100.0 37 TGTTTTCTCC .............................. TTGTGCTTCTTAAGAATCTCCCTGGCCTGCTCTGGGG 206396 30 100.0 37 TGCTCTGGGG .............................. TGAAAGAACAAAGAGAATATTTAGCTGAAAAATATCC 206463 30 100.0 36 AAAAATATCC .............................. CAGTATAACCAAGTGCTGAATCATACCCACCAGCAT 206529 30 100.0 37 CCACCAGCAT .............................. ATAATCTGCGAGAACTTCCTAAGCTTTTTCCTAAGTT 206596 30 100.0 36 TTCCTAAGTT .............................. AGGTTAAGCACAAATTTGGTTCCAAACGAGGTGCAA 206662 30 100.0 36 CGAGGTGCAA .............................. ATTGCCTGCTCAAAGGCTTCGTGCGGGCTCATCTCT 206728 30 100.0 37 GCTCATCTCT .............................. AGAAGAAAACCATACGATGACAAAAAGATCGATGCAC 206795 30 100.0 36 ATCGATGCAC .............................. GATGCTGACAAACATCTATACATAACAGTAGCCGAG 206861 30 100.0 35 AGTAGCCGAG .............................. CGCTTCTTCTTCAAAACATGTCTCAACAATTTGCT 206926 30 100.0 36 ACAATTTGCT .............................. TTAACAATATCATCCGAGCTAAATATTCCGAATACT 206992 30 100.0 36 TCCGAATACT .............................. GGCGACTTACTTCGTTCTGCTTGGAGACATTCTCGA 207058 30 100.0 35 ACATTCTCGA .............................. TCCGTAAGCTGTCGCGAATTCGTTGTAGTATGCTT 207123 30 100.0 38 TAGTATGCTT .............................. GGGAATCGTAGTGCTTGTGTTGCACCATTATATGTGTG 207191 30 100.0 36 TATATGTGTG .............................. CAACTTGATTCAATTGAGATGATCGCGAACACGTCC 207257 30 100.0 37 GAACACGTCC .............................. TGTTACATTTGCATATGGTAGTTATTGGGACTTTGGT 207324 30 100.0 37 GGACTTTGGT .............................. CGCCTGCTGAAGTGTCTCATATTTTTGCTGTAGCTCT 207391 30 100.0 36 CTGTAGCTCT .............................. TGTCGTTGAGGCCTCGAATTTGAACAGAACACCGTT 207457 30 100.0 37 GAACACCGTT .............................. TTCCACTATATCCTTCAATTCATTCAAATCATCGATG 207524 30 100.0 36 ATCATCGATG .............................. AAGCGTTTGAATTTTTGAATCCAGATCTTGGAGACT 207590 30 100.0 36 CTTGGAGACT .............................. GGATTTTCGCTATTGGATAGTTTGACTCCAGAACAG 207656 30 100.0 36 TCCAGAACAG .............................. TTGGATATTTGAATGAAGTATCGCTAATATTTGGAA 207722 30 100.0 36 ATATTTGGAA .............................. TAGACGCGTCCCAAGCAATGGACTTTCTCCAACTTG 207788 30 100.0 35 CTCCAACTTG .............................. GACTTCGATTGTGAAATTCACACCATTAATGGGTT 207853 30 100.0 36 TTAATGGGTT .............................. CAAAAGAGGGAAAAACTGGATGGCAGTAATTACAGC 207919 30 100.0 36 TAATTACAGC .............................. TTCAATCACCAGGCGGAATTAACTTCCGAGGAAGCT 207985 30 100.0 37 CGAGGAAGCT .............................. CCGGCATTGGCCTTTTGGCAAGTGTATACGAAAGGAT 208052 30 100.0 36 ACGAAAGGAT .............................. CGTTCTACTCAGGCTATCGCGATCTTGCACAATCTT 208118 30 100.0 39 GCACAATCTT .............................. GCCGTTGGAGCAACGATACCGATACTTTGAGCAAGCTCT 208187 30 100.0 36 AGCAAGCTCT .............................. TCAGAAATTTCATCAGCAAGAGCATCAATAGACGTT 208253 30 100.0 37 AATAGACGTT .............................. TCGCTTGATATTGCTCTTGATATTGATCTTGTGTTTG 208320 30 100.0 36 CTTGTGTTTG .............................. TTCCAAATGCGATCGTGAGTGCTCCAATTGTTGCTG 208386 30 100.0 ATTGTTGCTG .............................. CCATAAGATA ========== ====== ====== ====== ========== ============================== 44 30 36 GTTTCCATCCCTCTAAGGTTCGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [162,429] Score: 0.18/0.18 # # Final direction: F [4.5,0.82 Confidence: HIGH] >NC_009882 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 845734 19 100.0 32 NNNNNNNNNN ................... GGTGGAGGTGGAATGTTATTGCCCGGTAAAGG 845785 19 100.0 20 NNNNNNNNNN ................... ATGTTACTGTCCGGTAAAGG 845824 19 100.0 1 NNNNNNNNNN ................... NNNNNNNNNN ========== ====== ====== ====== ========== =================== 3 19 26 AGGCGGTGGTGGAGGTGGA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [3,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [471,1076] Score: 0.18/0.18 # # Final direction: R [0,0.18 Confidence: MEDIUM] >NC_009921 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 1657578 31 96.8 37 CCGGCCCCGG ..............................G CATGGAGGTAGCCGGGGAATTGGGGGGCGGGGTTTAT 1657646 31 100.0 33 CGGGGTTTAT ............................... AGGCGCAGCGACCGACCTGCACGACGGGGATGG 1657710 31 100.0 33 ACGGGGATGG ............................... GCCGACTGTCGCGCGGCTCCTGGCCGAGCGCCT 1657774 31 100.0 CCGAGCGCCT ............................... CGAGTGTAAA ========== ====== ====== ====== ========== =============================== 4 31 34 GTTGCGATCCCTCCAGGGATGATCAGCGACC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [6,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-5.80,-5.70] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [23.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2033,409] Score: 0.18/0.18 # # Final direction: R [0.18,0.68 Confidence: MEDIUM] >NC_009921 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1674520 30 100.0 34 GTGGATGCGC .............................. GCGAAGACGAGCGCCGGGCCCTCAAGCGCCAGGT 1674584 30 96.7 37 AGCGCCAGGT ............................G. CGCTCCCGCCGAAGCCCACCCCGATCGGCCTGATCCG 1674651 30 100.0 36 GCCTGATCCG .............................. CCAGTGGGCGATCCCCGGCGGGATGGTGGACCCGGG 1674717 30 100.0 37 TGGACCCGGG .............................. GGCAACTTCCCGCACTCTGCGGTCGTCAACGGTCCCT 1674784 30 100.0 33 AACGGTCCCT .............................. TCTACCTCGCCTGCCCCCCGGAAGCCCCTGGAC 1674847 30 100.0 37 GCCCCTGGAC .............................. GGTAGCCAGGCCGTGAAAGCGCCGGTGACGTACCGGC 1674914 30 100.0 36 ACGTACCGGC .............................. TAGGGGTGTAGGCCACGGCCTCGCCGAGGTGCGCGG 1674980 30 96.7 36 AGGTGCGCGG .........................C.... AGCGCGTCACCGATCAGCGCGAGGCCGGACAGTGAC 1675046 30 100.0 38 GGACAGTGAC .............................. GCGGTGTGCTCCGGCTGCTGGGTGCAGGTGCAGTGCGG 1675114 30 100.0 36 TGCAGTGCGG .............................. GTACGCCCACGGCCCCGCCACCCTCACCCCGGACGA 1675180 30 100.0 CCCCGGACGA .............................. AGGGCCAGCC ========== ====== ====== ====== ========== ============================== 11 30 36 GTTGCGATCCCTCCAGGGATGATCAGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [6,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-5.80,-5.70] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [26.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [217,104] Score: 0.18/0.18 # # Final direction: R [0.18,0.27 Confidence: LOW] >NC_009921 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 1675312 31 100.0 36 CCTGAGCTGC ............................... ATGCCGCGTGGGAGTGGGCGACGCGGGTGACGCAGG 1675379 31 100.0 33 GTGACGCAGG ............................... CTGAGCGCGTCGACATCGGCGGGTCGACCGCCA 1675443 31 96.8 33 TCGACCGCCA A.............................. ACGCGGGGGAGGACTTCGACCTCGACCCGAACT 1675507 31 100.0 GACCCGAACT ............................... GGCCCCACCG ========== ====== ====== ====== ========== =============================== 4 31 34 TGTTGCGATCCCTCCAGGGATGATCAGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-5.80,-5.70] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [31.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [103,108] Score: 0/0.18 # # Final direction: R [0.41,0.64 Confidence: LOW] >NC_009921 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1675644 30 100.0 36 CCCCGCTCGA .............................. CGGTGTCGTCGGGGATGGCGACGTCGACAGGCTGTC 1675710 30 100.0 34 ACAGGCTGTC .............................. ACCGGCACCGGAACCGCTCCTGGGCGGCCTGGCG 1675774 30 100.0 35 CGGCCTGGCG .............................. ACCGGCACCCGGAACCGCTCCTGGGCGGCCTGGCG 1675839 30 100.0 35 CGGCCTGGCG .............................. ACCGGCACCCGGAACCGCTCCTGGGCGGCCTGGCG 1675904 30 100.0 36 CGGCCTGGCG .............................. TCGTGGTCGTCAGTGCTCGGTCCAGTCTCCGCGCTC 1675970 30 100.0 36 CTCCGCGCTC .............................. GCACACCCGGGTCGGTCGGACCTCGCGCCAGTCAGC 1676036 30 100.0 35 GCCAGTCAGC .............................. CCGGCACGGTGGCTATTGGACAAGCCTAGGATCGC 1676101 30 100.0 36 CTAGGATCGC .............................. ACCGACCTGTACGCCGAGCGCGGTCGCGACATCGGC 1676167 30 100.0 36 CGACATCGGC .............................. GCTGCTCGCCATGGACACCGACGCGATGACCAACTT 1676233 30 100.0 TGACCAACTT .............................. CCGAGTGTAA ========== ====== ====== ====== ========== ============================== 10 30 35 GTTGCGATCCCTCCAGGGATGATCAGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [6,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-5.80,-5.70] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [30.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [107,230] Score: 0.18/0.18 # # Final direction: R [0,0.45 Confidence: MEDIUM] >NC_009921 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 1686502 31 100.0 38 TTACACTCGG ............................... GTCCGGTCCCAGTCCCGGACGGTCACCGTGACCCGCGA 1686571 31 100.0 37 TGACCCGCGA ............................... ACGAGGCTGCGTCCGCTCACGGCGGCGGCGAGCAGGA 1686639 31 100.0 39 GCGAGCAGGA ............................... TGGGAGCGCAGGCATGATCCCGTTCCCGGAGCCTCCCGG 1686709 31 100.0 37 AGCCTCCCGG ............................... CCCGGTTGCACCGGGCGGGGCTGACCAACCCACCCCG 1686777 31 100.0 37 ACCCACCCCG ............................... TCGCGGAGCTGGTCGACGTCCCCGCTCGCCCGCCGGG 1686845 31 100.0 35 GCCCGCCGGG ............................... ATGGTGACGTTGGCCATGTCGGCGCGGGCGGCCAC 1686911 31 100.0 GGGCGGCCAC ............................... TCTGTCCGATC ========== ====== ====== ====== ========== =============================== 7 31 37 GGTCGCTGATCATCCCTGGAGGGATCGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [6,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-5.70,-5.80] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [33.3-31.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [112,3213] Score: 0.18/0.18 # # Final direction: R [0,0.18 Confidence: MEDIUM] >NC_009921 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1686503 30 100.0 39 NNNNNNNNNN .............................. GTCCGGTCCCAGTCCCGGACGGTCACCGTGACCCGCGAG 1686572 30 100.0 38 NNNNNNNNNN .............................. ACGAGGCTGCGTCCGCTCACGGCGGCGGCGAGCAGGAG 1686640 30 100.0 40 NNNNNNNNNN .............................. TGGGAGCGCAGGCATGATCCCGTTCCCGGAGCCTCCCGGG 1686710 30 100.0 38 NNNNNNNNNN .............................. CCCGGTTGCACCGGGCGGGGCTGACCAACCCACCCCGG 1686778 30 100.0 38 NNNNNNNNNN .............................. TCGCGGAGCTGGTCGACGTCCCCGCTCGCCCGCCGGGG 1686846 30 100.0 36 NNNNNNNNNN .............................. ATGGTGACGTTGGCCATGTCGGCGCGGGCGGCCACG 1686912 30 100.0 38 NNNNNNNNNN .............................. TCTGTCCGATCCCGAGCAGGTCCAGCCCGAGCGGCAGG 1686980 30 100.0 36 NNNNNNNNNN .............................. GTGAGAGCCGGCGGGCAGGCAACCCGGTCCGGCATG 1687046 30 100.0 38 NNNNNNNNNN .............................. CCAACTATCCGGCGGCTCGCCAACCCCTCGCCAACTAG 1687114 30 100.0 37 NNNNNNNNNN .............................. CCGAGCTGTGGCGGTTCGCGTCCGAGTACACCCGGCG 1687181 30 100.0 37 NNNNNNNNNN .............................. AACGGTGCGCAGGTGCGTCCAGCCACGGGTCTGGTAG 1687248 30 100.0 35 NNNNNNNNNN .............................. GGCGCCGGGCCGGGGCGTCAGACCGGCGCCCCTTG 1687313 30 100.0 37 NNNNNNNNNN .............................. TGGTCCTGGTCCTGGTGCTTGTCGCCGTGGCCGCACG 1687380 30 100.0 38 NNNNNNNNNN .............................. GCGCGAGACTGCGCGCCACCGTGAGGCGGGTCTCGTAG 1687448 30 100.0 37 NNNNNNNNNN .............................. CCGGCGAGGTGCCGGCCTCGCCTGCCAGGGTGACGCG 1687515 30 100.0 37 NNNNNNNNNN .............................. ATGGTGTCGCTGGTGATCTGCTTGACGGTCAGAGTGG 1687582 30 100.0 36 NNNNNNNNNN .............................. AAGGTGACGCAGGACGATGCGTACTGGCGGACCTGG 1687648 30 100.0 34 NNNNNNNNNN .............................. CGGATGTCGACGACGACCTGCCAGCGGCCGGCGT 1687712 30 100.0 37 NNNNNNNNNN ...A.......................... TCGACCGGGGCCCTCTTCCGTGCGTGGGAGTCAGGCG 1687779 30 100.0 34 NNNNNNNNNN .............................. CGGATGTCGACGACGACCTGCCAGCGGCCGGCGT 1687843 30 100.0 37 NNNNNNNNNN .............................. TCGACCGGGGCCCTCTTCCGTGCGTGGGAGTCAGGCG 1687910 30 100.0 38 NNNNNNNNNN .............................. GCGCCTTTCTAATGGATCGCGAGGTGGATGTTCTCGGG 1687978 30 100.0 35 NNNNNNNNNN .............................. ATGAGCTGTGGTGCGATGTTGTCCCGCTCTTCGTG 1688043 30 100.0 36 NNNNNNNNNN .............................. TCGCGGCACAGGGCGCGGTGACGCCAATCCATGATC 1688109 30 100.0 35 NNNNNNNNNN .............................. TACCAGGCGCGCTTGCCGCAGAGGGACTTCCCGGG 1688174 30 100.0 34 NNNNNNNNNN .............................. GTGAAGGTCGGGCTGGATGCCTGCGGTGCCTCGG 1688238 30 100.0 37 NNNNNNNNNN .............................. CGCATCTGGGCGCTGTGGCCGCCAGAGAGCGGGACTG 1688305 30 100.0 37 NNNNNNNNNN .............................. TTCGACGCCGACATCTCGGTGACGTACAAGCTGCGCC 1688372 30 100.0 38 NNNNNNNNNN .............................. ACCTCATACCACCTGAGTTCGCGCATTGAACCTCCCTC 1688440 30 100.0 34 NNNNNNNNNN .........................A.... AACAGCTCCTGAATCTTCTCGTCAGGGAACTCTT 1688504 30 100.0 35 NNNNNNNNNN .............................. AGCAGCCGGTAGTAGTGCGCGACGTGGCCGACCCT 1688569 30 100.0 35 NNNNNNNNNN .............................. GCGGCAGATATCACACGATCAGGATTCCGGCCTGG 1688634 30 100.0 34 NNNNNNNNNN .............................. GCCGGATCCCAAATGTCGCCGTCGCCGTCGCCGT 1688698 30 100.0 36 NNNNNNNNNN .............................. AGGAAAGAAGTCGGGAGGACCCCACAAGGAAGCCCG 1688764 30 100.0 36 NNNNNNNNNN .............................. CCGTGTCGCGCCCGACGGAGTGCCCGGGCGGAGCGC 1688830 30 100.0 34 NNNNNNNNNN .............................. ATGGCCCTGGTGTACTGCTCCGCCCGCTTGGCGG 1688894 30 100.0 36 NNNNNNNNNN .............................. CGCTTCCACGGCTCCATCCGACCGTCCCCTCATGCC 1688960 30 100.0 34 NNNNNNNNNN .............................. CAGGTGGTCATCCCCGCGCGGGCCTCCTGCTGGG 1689024 30 100.0 36 NNNNNNNNNN .............................. AGCGCATCGCGGATGGTCCGCCACACGACGTCTTCG 1689090 30 100.0 36 NNNNNNNNNN .............................. ACGTCGCAGGGCGCGGTCTCGACCGTCGCGTAGCCC 1689156 30 100.0 37 NNNNNNNNNN .............................. AAGAATGCAGCTCGCGACCAACGTAAAGGCATCTGAC 1689223 30 100.0 34 NNNNNNNNNN .............................. GCTGCTCACAGCACTCTCCTTGGAGTCGGTGGGG 1689287 30 100.0 34 NNNNNNNNNN .............................. AATTTCTGCTCCAGGTCTTCCATCTGCTGGCGGA 1689351 30 100.0 36 NNNNNNNNNN .............................. TCGTGCTCCCAGAGGCTTACCTGCTTGACGCGCTGG 1689417 30 100.0 1 NNNNNNNNNN .........T.C.....A..........CG NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 45 30 36 GTCGCTGATCATCCCTGGAGGGATCGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [6,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-5.70,-5.80] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [33.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [113,708] Score: 0.18/0.18 # # Final direction: R [0.41,0.45 Confidence: LOW] >NC_009925 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 4815174 37 97.3 35 ATGCCTAAGC ........T............................ GGAACTCAACGTCATGCTCTGCAATCATTTCAGTT 4815246 37 100.0 35 CATTTCAGTT ..................................... ACTTTACCTGGAAGCGGCTTGAGGTCAGTCGCGAA 4815318 37 97.3 35 CAGTCGCGAA ..........................A.......... CTCAATTGGAAATTAGAGGAGCAAACGCAATGCAT 4815390 37 100.0 CGCAATGCAT ..................................... AGTACCCAGC ========== ====== ====== ====== ========== ===================================== 4 37 35 CTTTCAACCCCCAACACCCTCAAAAGGACGTTGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [11,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.70,-4.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [489,253] Score: 0/0.18 # # Final direction: R [0.37,0.78 Confidence: MEDIUM] >NC_009943 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3590108 29 100.0 32 NNNNNNNNNN ............................. CAACACCGTTTTTACAAGCGCCTGAATTTTGT 3590169 29 100.0 32 NNNNNNNNNN ............................. CCCTTCCTTCATCAGCTCCACTTCTGTTTTTA 3590230 29 100.0 32 NNNNNNNNNN ............................. CGGTAACGCTATAAGTGATTAAATCGTTAGTA 3590291 29 100.0 32 NNNNNNNNNN ............................. ACAACATGATGATACTGCACCCCCTGACTCTT 3590352 29 100.0 32 NNNNNNNNNN ............................. CTGACCGGAGAACTGGAACTGGGCGAAGCAAC 3590413 29 100.0 32 NNNNNNNNNN ............................. GAAGATGCTGACCGCGGCGTTCTTTTCTGCCA 3590474 29 100.0 32 NNNNNNNNNN ............................. GACACGGCTTCTGATTGGCTGACTTGGCTGCC 3590535 29 100.0 32 NNNNNNNNNN ............................. TATTCGTAATTCCGCGCGATATCGGCGGAGGC 3590596 29 100.0 32 NNNNNNNNNN ............................. CGAACGAGGGACAGCGCGAATTTCATATTCTA 3590657 29 100.0 32 NNNNNNNNNN ............................. GGTTCCAGAGGGATTATTTTTTTCACCAGATA 3590718 29 100.0 32 NNNNNNNNNN ............................. CGGGTAAACGAAAAAACAGTTAAAACAGAAAT 3590779 29 100.0 32 NNNNNNNNNN ............................. GGATATGAAAATATTAAAAGTTTTGTATGGGA 3590840 29 100.0 32 NNNNNNNNNN ............................. CCACGTTTTCAACCTTTACGACACCGGTTTTG 3590901 29 100.0 32 NNNNNNNNNN ............................. CGGCGGATGACCAGTGTTCCACGGCCAGATAC 3590962 29 100.0 32 NNNNNNNNNN ............................. TATAGCGGCGGTACAAACCCAGATAGGCGTTA 3591023 29 100.0 32 NNNNNNNNNN ............................. TATCGCGGATACCGTGGAGGATGGATCGGATC 3591084 29 100.0 32 NNNNNNNNNN ............................. TGATAATCACAAAGCAGACTGACCGGGCCATC 3591145 29 100.0 32 NNNNNNNNNN ............................. AATCCACCATGGCCTCGTCTTCCTCCCGCAGG 3591206 29 100.0 32 NNNNNNNNNN ............................. CTGTCCAGGTGTATCTCGATGAGGTGCGGGCG 3591267 29 100.0 32 NNNNNNNNNN ............................. CCCTCCGTCCAGAGCATGACGGCGGACCAGAT 3591328 29 100.0 32 NNNNNNNNNN ............................. GTATTCGGAGGCGGCTTTGTCGGAACCGAACT 3591389 29 100.0 32 NNNNNNNNNN ............................. TTATAGCCGGGAGCAGCGGCCCCCATCATAAC 3591450 29 100.0 32 NNNNNNNNNN ............................. CAAACATAACCAGATCCCGGCCGAGGCGTTTG 3591511 29 100.0 32 NNNNNNNNNN ............................. CCCTGGGAAAAGATTATGCGTCGGCGGCCGAG 3591572 29 100.0 32 NNNNNNNNNN ............................. GAATAAGGAAAAACCGGTTTTGGTTTTCGATC 3591633 29 100.0 32 NNNNNNNNNN ............................. CCGGGGCCAGTAATCCAGCAAACATCATTTAT 3591694 29 100.0 32 NNNNNNNNNN ............................. GCTCGGTCAATACCCGGGCGGCTGTCGTTCTT 3591755 29 100.0 32 NNNNNNNNNN ............................. GTGGCCTCTGGCGTGTCACCAAGGGTGCACGC 3591816 29 100.0 32 NNNNNNNNNN ............................. CCTGAGTCATATATTCGGTGGCTTTTCGCAGG 3591877 29 100.0 32 NNNNNNNNNN ............................. GTGTTTATTTTATTTAAAATTTCTGTCATTTT 3591938 29 100.0 32 NNNNNNNNNN ............................. TTTGCCGTTGGGTTTGCCACCTGTCAGAGAAA 3591999 29 100.0 32 NNNNNNNNNN ............................. CATATCAGGTTGCTGTCGAGGTCGTTGATGGT 3592060 29 100.0 32 NNNNNNNNNN ............................. AGAAAAGAACCTTATTTTTAAATATTTTGTTT 3592121 29 100.0 32 NNNNNNNNNN ............................. AGAAAAGAACCTTATTTTTAAATATTTTGTTT 3592182 29 100.0 32 NNNNNNNNNN ............................. CTCATGATCGCCGTGCGGGCCGCGCCGTAGCT 3592243 29 100.0 32 NNNNNNNNNN ............................. GGAAATGAAGAACAGAAAACGGAACCCCCGGA 3592304 29 100.0 32 NNNNNNNNNN ............................. CGACCGACGACGTGGATCCACTGGCCACGGAT 3592365 29 100.0 32 NNNNNNNNNN ............................. TACGGGACGCTCAACTCCCAGGATGCCATCGG 3592426 29 100.0 32 NNNNNNNNNN ..............C.............. GGCGACGGCCCGAAAACCGCCGCCCTGCAGTG 3592487 29 100.0 32 NNNNNNNNNN ............................. GCCCCGGGTTGGCCGCCGCTGAGGATCTGGCG 3592548 29 100.0 1 NNNNNNNNNN ..............C...A...C.TGGAT NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 41 29 32 ATGTTCCCCACACGTGTGGGGATGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [6,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [94,127] Score: 0/0.18 # # Final direction: F [0.68,0 Confidence: HIGH] >NC_009943 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 860229 35 97.1 39 GCACCCCCGG ...C............................... GATTTACGGTATCGCCAACAGCTACGGTGAAGGGTCAAG 860303 35 100.0 34 AAGGGTCAAG ................................... GTTTTGGCGGAACATTCACAACCGTCCTGGCCGG 860372 35 100.0 39 TCCTGGCCGG ................................... CATGACTACAACATCAAGTAATTATGCTGAGATTCCCAA 860446 35 100.0 40 AGATTCCCAA ................................... GCGACACTAACAACGCGGAAATGAAGGCTGCAAAGGCCAA 860521 35 100.0 39 CAAAGGCCAA ................................... CAGTTAGAAGAAAAGATGGCCAAGGCAGCTGAGGCTGAG 860595 35 100.0 39 TGAGGCTGAG ................................... TTTTTATTAATCAATAAAAATGGAGGTTTGAGACATGAC 860669 35 100.0 39 GAGACATGAC ................................... ACGGTCAGCCGATTCAGATTCAGAAGACCTCGTTCACCA 860743 35 100.0 40 TCGTTCACCA ................................... GATTTCCCATTCATGAGGGACAGAACGTCATCATACGTTC 860818 35 100.0 38 TCATACGTTC ................................... TGGTTATCGATGGTGTTGAATATAAATTGGTAAGAAAA 860891 35 100.0 34 GGTAAGAAAA ................................... GGACTTTCCACGAAGTACTGAACACAAAAGATTT 860960 35 100.0 38 CAAAAGATTT ................................... CTTACCAGGATTTATTTCAAGAGGCCTGTGTTGCATAC 861033 35 100.0 42 TGTTGCATAC ................................... TGGGAAAATATTAAGAAAAGATCAGACTACGAACTATTTTTT 861110 35 100.0 38 ACTATTTTTT ................................... ATTGCCGATTACCTGTCATATAACCTTACTGCGATTCA 861183 35 100.0 37 CTGCGATTCA ................................... AGAGCTTTGAGGTAGGCGATAAGGTCTGCTGGTGTGG 861255 35 100.0 41 GCTGGTGTGG ................................... TTTATATCCTTCCTTCCCTAAATACTCTCTAATGTATTTTA 861331 35 100.0 ATGTATTTTA ................................... CGCGGCCTTT ========== ====== ====== ====== ========== =================================== 16 35 38 GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.80,-5.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [31.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [233,300] Score: 0/0.18 # # Final direction: R [0,1.42 Confidence: HIGH] >NC_009952 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3390219 29 100.0 32 NNNNNNNNNN ............................. GGCATCGCCCCGGCGGCCACCGACACCACCAG 3390280 29 100.0 32 NNNNNNNNNN ............................. TGGTCGGGCTGGACGTATCTCGCGGAGACGCT 3390341 29 100.0 32 NNNNNNNNNN ............................. TTTCCAGACAACGGGCCTGGCCCTGAATGCCG 3390402 29 100.0 32 NNNNNNNNNN ............................. GACACCGGGGCGATCCGGTCGCCGGGGTTCAT 3390463 29 100.0 32 NNNNNNNNNN ............................. CTGGAGGGAGCTGTGGTTGGACCTGACCCGCT 3390524 29 100.0 32 NNNNNNNNNN ............................. CTGCTGACGCGCCTGGCCGGGGCGCTGGATGC 3390585 29 100.0 32 NNNNNNNNNN ............................. GGGAAGGTGCTTGGACTTGCGCCGCCGAGGTT 3390646 29 100.0 32 NNNNNNNNNN ............................. TTGGACAGCACCTCGGGATCGTTGGGCAGCGT 3390707 29 100.0 32 NNNNNNNNNN ............................. TCTTGGACAGCACGAGGGGGGAGGTGATTCTG 3390768 29 100.0 32 NNNNNNNNNN ............................. CCGTCCTGGTCCTCGAACACCCCCGCGCCGGG 3390829 29 100.0 32 NNNNNNNNNN ............................. TGTCCTATGCCGTCGAAAAAGCCGCCAAAGCC 3390890 29 100.0 32 NNNNNNNNNN ............................. ACTCACCTATGACGAAGACCGGACGCTCAGCG 3390951 29 100.0 32 NNNNNNNNNN ............................. CCGGAGGGAGCTGTGGTTGGACCTGACCCGCT 3391012 29 100.0 32 NNNNNNNNNN ............................. CGACCACACGTCGCGAAGTCAAGATCCCGACC 3391073 29 100.0 32 NNNNNNNNNN ............................. GAGACTGATAGCGTCGCGGTTGAGACGTTCAA 3391134 29 100.0 31 NNNNNNNNNN ............................. TTGAACCCCTCGGCCCACCCGACGGGCAAGG 3391194 29 100.0 32 NNNNNNNNNN ............................. CCACCCGAAACCAGCGGCCTGGATGAATTCAC 3391255 29 100.0 32 NNNNNNNNNN ............................. GTAGTAAATCATGTTCGGGCGCAGCTTCATAT 3391316 29 100.0 32 NNNNNNNNNN ............................. AGTGGGATCGCTTGATCCGCGACCGTTTCACC 3391377 29 100.0 32 NNNNNNNNNN ............................. ATCCGCATCATCGCCACGGAGTCCGGCGCCGC 3391438 29 100.0 32 NNNNNNNNNN ............................. CGCCGAGCGTTTTGGCGTGACGGTTAGTGATC 3391499 29 100.0 32 NNNNNNNNNN ............................. TTTGGTGACGACCTATTCTTGAAGATCAACGC 3391560 29 100.0 32 NNNNNNNNNN ............................. GGCGCGCTCCTGCTGGCTGTGGTGGCGTTCCT 3391621 29 100.0 32 NNNNNNNNNN ............................. GGCGGCAAGGGTGACACTATCGAGGATCTGGT 3391682 29 100.0 32 NNNNNNNNNN ............................. GCGATTACGAAAAGCACCTGACCTATATCGAG 3391743 29 100.0 32 NNNNNNNNNN ............................. GCAATGGCCGATATGCTCGATCCCCAAAAGGT 3391804 29 100.0 32 NNNNNNNNNN .T..........................G TGGAACACGTGCACGTCGATAATCCTGGGCCG 3391865 29 100.0 32 NNNNNNNNNN ............................. AGCGAGGGCACTGCGACCGCCACCAGCGCCGA 3391926 29 100.0 32 NNNNNNNNNN ............................. TCGGCTCGCGTCGTCAACTGAAACCGCATCAC 3391987 29 100.0 32 NNNNNNNNNN ............................. GTAGCGATTGGGGTGTCGCCTCCTTCGAGGTA 3392048 29 100.0 32 NNNNNNNNNN ............................. TACGACCGCCAGCGGTATATTATTGGTGTGGA 3392109 29 100.0 32 NNNNNNNNNN ............................. AAGGCCCCGCTCGGGCCGGACTACGTGCGTCA 3392170 29 100.0 32 NNNNNNNNNN ............................. GGCGCGAGCGCTTCCTGCACATCGCTGGGTGG 3392231 29 100.0 1 NNNNNNNNNN ..............T.T............ NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 34 29 31 GGCTCCCCCGCCCCCGCGGGGATAGACCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [3,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-12.20,-13.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [43.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [65,227] Score: 0.18/0.18 # # Final direction: F [1.05,0.55 Confidence: LOW] >NC_009952 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 396424 36 100.0 30 AAAAGGAACA .................................... CGCGTCCAGACACGACATTCGGGGGGCAAG 396490 36 100.0 30 GGGGGGCAAG .................................... AAGCGTGTGGGCGTCCCGCCCGTCAGCCAC 396556 36 100.0 30 CGTCAGCCAC .................................... ACATTTACCACTCGGCGCGTTGATACCGTT 396622 36 100.0 30 TGATACCGTT .................................... GTGTTTGGCCATCTCCCGCAGCTTGTTGTA 396688 36 100.0 29 GCTTGTTGTA .................................... CGCACAAAAGCTCGTAGCTGATCTGAAAG 396753 36 100.0 30 GATCTGAAAG .................................... TGAACCCATCCGCGCCTGCACTCTGACATG 396819 36 100.0 30 CTCTGACATG .................................... GAAATCGCAACCCGGTGCTACGCGCAACCG 396885 36 100.0 CGCGCAACCG .................................... CGTTGGCGAAGGCTCCACACATATCGAAAAGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAACTTGAACGTTGGCGCGTGTATCCTCGTACCGAGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAACCTGACGAACATCGCCCTGACTGACGTAAGTAGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAACCTGCACGTCGCGCGCTCACGCCATGCCTGCAGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAACACATCGGGCATCCGCGCCCACAAAGGAGTAAGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAACGGAGTTCGCGCCCTCCTGCTGAACGGCGCCAGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAAAAAGCCGCCCTCGCCTGCGCGTGTGAGCGCAGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAACACCGCCGCGTTGCCTTTCGCGGCTGAATAGAGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAACACAAAGAAAGACGGTAACGGGAAAGAGCGAGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAACGTGGCGGTGAATTTCGGCGGGTTTGCCGAGAGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAACCGACAACGCCGACGAGAGCGGATACGCCTGAGTTTAGCTGTTCAAAATTCGGGGTCCAGCCGCAACCCACATTTGACACGGGAACAGCGCCAACCC ========== ====== ====== ====== ========== ==================================== 8 36 29 AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [8,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.70,-5.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [53.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [75,1070] Score: 0.18/0.18 # # Final direction: R [0.27,0.92 Confidence: MEDIUM] >NC_009952 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 396950 36 100.0 30 CATATCGAAA .................................... TTGAACGTTGGCGCGTGTATCCTCGTACCG 397016 36 100.0 30 CCTCGTACCG .................................... CTGACGAACATCGCCCTGACTGACGTAAGT 397082 36 100.0 30 TGACGTAAGT .................................... CTGCACGTCGCGCGCTCACGCCATGCCTGC 397148 36 100.0 30 CCATGCCTGC .................................... ACATCGGGCATCCGCGCCCACAAAGGAGTA 397214 36 100.0 30 CAAAGGAGTA .................................... GGAGTTCGCGCCCTCCTGCTGAACGGCGCC 397280 36 97.2 30 GAACGGCGCC ...................................A AAAGCCGCCCTCGCCTGCGCGTGTGAGCGC 397346 36 100.0 30 GTGTGAGCGC .................................... ACCGCCGCGTTGCCTTTCGCGGCTGAATAG 397412 36 100.0 29 GGCTGAATAG .................................... ACAAAGAAAGACGGTAACGGGAAAGAGCG 397477 36 100.0 30 GGAAAGAGCG .................................... GTGGCGGTGAATTTCGGCGGGTTTGCCGAG 397543 36 100.0 30 GTTTGCCGAG .................................... CGACAACGCCGACGAGAGCGGATACGCCTG 397609 36 97.2 GATACGCCTG ..............A..................... CCACATTTGACACGGGAACAGCGCCAACCC ========== ====== ====== ====== ========== ==================================== 11 36 29 AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [8,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.70,-5.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [601,346] Score: 0/0.18 # # Final direction: R [0.41,0.74 Confidence: LOW] >NC_009953 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2266660 28 96.4 34 GAACGAGGGC ................T........... GATCGAGATTGCCCAGACCGAGGGCCCAGACGAC 2266722 28 100.0 33 CCCAGACGAC ............................ CGCGTCTGCCGGCCTACTCGCCGACGAGCAGGC 2266783 28 100.0 33 ACGAGCAGGC ............................ GTGGGGGCGGTGTAGGTGGCGCGGCGGTAGGCG 2266844 28 100.0 33 GCGGTAGGCG ............................ CTCGGGTCGTTGGCCGGCGGCGGTGGCGGTGGC 2266905 28 100.0 33 TGGCGGTGGC ............................ GTGGTCTGCCCTTCCCGCAGGTGCAGTGCCCGC 2266966 28 100.0 33 CAGTGCCCGC ............................ CCCTGGGCGACCGTTGACGGATGCTCTACCGGC 2267027 28 100.0 33 CTCTACCGGC ............................ AACGTCGCATCGCCGTCGAAATGGATGTTCTGC 2267088 28 100.0 33 GATGTTCTGC ............................ GCGGGCCTTCTTTTTCTCGTCTGGTGTCCGGTC 2267149 28 89.3 35 GTGTCCGGTC .........................--- ACTCGATGCCAGTGCCGGGGTCGTCTTCCTCCGCC 2267212 28 100.0 33 TTCCTCCGCC ............................ AACGCACCCAACGTGGGCAGCAACACCTTTGCC 2267273 28 100.0 34 CACCTTTGCC ............................ TTCGGAAACGTCGTAGTCGTCGTCGGCCAGGTGC 2267335 28 100.0 33 GGCCAGGTGC ............................ CTGAGGCACACGCCGCCCTCTGTGCCACTGGAC 2267396 28 100.0 33 GCCACTGGAC ............................ AGGTCCAGCCGTCACCGAGTGCCATGTCATCCC 2267457 28 100.0 33 ATGTCATCCC ............................ GCCGCTACCTCCGTTACCAGCGTCGCGCGCAAC 2267518 28 100.0 33 CGCGCGCAAC ............................ TCGCCTAGTCCGCCCTTGTAGACGTTGTTCGTC 2267579 28 100.0 33 GTTGTTCGTC ............................ TCACCGTTGGAGTCCTTGATCTGCCGGATGGTC 2267640 28 100.0 33 CCGGATGGTC ............................ GCCATTGGCGACCTCGCCAGCGGGCTATACAAC 2267701 28 100.0 33 GCTATACAAC ............................ GCGTAGCCCTCGAGGTGGTCGGAGACACCAGCC 2267762 28 100.0 33 GACACCAGCC ............................ GGGGTACCGGTCGGCCAGCCGGGTGGTGAGTAC 2267823 28 100.0 33 TGGTGAGTAC ............................ CCGAACCCGGCGTCAGGTTCACGGATGACCGCC 2267884 28 100.0 33 GATGACCGCC ............................ ACCACATCGTGCTCACCCTCGTCCGTATCGTCC 2267945 28 100.0 33 CGTATCGTCC ............................ GCAATGGTGGAGGCCCTGCTCACCCGACTCGGC 2268006 28 100.0 33 CCGACTCGGC ............................ TGACCGCCATCGTCTACCCCAGCCCCGATCAGC 2268067 28 100.0 33 CCCGATCAGC ............................ TGCAGTACACGACACTGCGGCGACGCTCACCTG 2268128 28 100.0 33 CGCTCACCTG ............................ GCGTGGATTGATGCCGGCGCTCCCGGCGGCTCG 2268189 28 100.0 CGGCGGCTCG ............................ ACTTCGTGAC ========== ====== ====== ====== ========== ============================ 26 28 33 GGAGCACCCCCACGTGCGTGGGGAGGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-10.90,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [26.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [406,121] Score: 0.18/0.18 # # Final direction: R [0.55,0.68 Confidence: LOW] >NC_009953 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2277289 29 100.0 32 GTCAGTAAGT ............................. ATGTAGGGGGATCTCAGGACCGGCTGGTCCGC 2277350 29 100.0 32 GCTGGTCCGC ............................. TACCGTCGGATCTTGCCCGAGTGGGTAGACGA 2277411 29 100.0 32 GGGTAGACGA ............................. CAACCCCATCGGGTCACGTCCGGTGGTCCGGG 2277472 29 100.0 32 GTGGTCCGGG ............................. CCATGTCAGGCACTCCGGTAGCGAGGTTGGAA 2277533 29 100.0 32 GAGGTTGGAA ............................. TTCACGGCGCCCAGGATCACGCCGTCACGACC 2277594 29 100.0 32 CGTCACGACC ............................. GGATTGACGACTACCTCGCCGCCCGCGCGGAG 2277655 29 100.0 32 CCGCGCGGAG ............................. ACGACGAGGTCTATGACGACACCGGGGCGATG 2277716 29 100.0 CGGGGCGATG ............................. GTCGCCCTAG ========== ====== ====== ====== ========== ============================= 8 29 32 GTCCTCCCCACGCACGTGGGGGTGCTCCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-10.90] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [43.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [20,8] Score: 0/0.18 # # Final direction: R [0.27,0.37 Confidence: LOW] >NC_009953 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2394497 28 100.0 33 CTGGTACCTG ............................ CGGCCGGATGGCTCGGGGAACGGCAGCACACCG 2394558 28 96.4 33 CAGCACACCG .................A.......... CTCGCTCTCGCACCGCCGGATCGTCCGCCTGAT 2394619 28 96.4 33 TCCGCCTGAT ........................G... CACCCCGAGGAGGCGGTGATCTGCGCCAAGGTG 2394680 28 96.4 38 CGCCAAGGTG ........................G... CTTCAGGGCTGGATCACCGGCCTGCCCCTCGCGGGATC 2394746 28 78.6 33 TCGCGGGATC ------...................... AAGGCCACCCGGATGTGGCGCGGGATCGTGTTG 2394807 28 100.0 33 GATCGTGTTG ............................ CACGGCGTACTGTGCCGTCACTCGATGTCTCCG 2394868 28 100.0 33 GATGTCTCCG ............................ CAAGAGCGTCGCGGCCATCTCCGCCTCCACTTC 2394929 28 100.0 33 CCTCCACTTC ............................ CACGAACTGCCGCTCGTTGCCCCGACCAAGGGG 2394990 28 100.0 33 GACCAAGGGG ............................ TTGCAGAACCGTCTGCCGCTGACCTGGCGGCTA 2395051 28 100.0 33 CTGGCGGCTA ............................ TGGTCGGCCTTGCGCTGCTGCGCGTTGGACGCC 2395112 28 100.0 33 GTTGGACGCC ............................ CTCCACCTGCCTGAGCGAGGCGAAGGCCCTGGA 2395173 28 100.0 33 AGGCCCTGGA ............................ CAGGCCGGACCGGTTGGAGCCCTTGACCTTCAC 2395234 28 100.0 33 TGACCTTCAC ............................ TGAACGGGCGGTGCGGGCGATGCGCTGCGGGTG 2395295 28 100.0 33 GCTGCGGGTG ............................ AGCAGATCCACCGCGAGGCGGACGCGCCTGTAC 2395356 28 100.0 33 GCGCCTGTAC ............................ GTCAAGAACAGCGAATCGCCGTCTCGGTAGCCG 2395417 28 100.0 33 TCGGTAGCCG ............................ CTCGGCGTCGACGTCGCCCTCGGCGGTAGAGCG 2395478 28 100.0 33 CGGTAGAGCG ............................ AAGGGTCCACCGCCAGGACTGCGAGCCGGGCCG 2395539 28 100.0 35 AGCCGGGCCG ............................ GGGATCGTCCCGGCCGATCACGCATACCCCGATGT 2395602 28 100.0 33 ACCCCGATGT ............................ TGCTCGACCACGATCCGCGCGTAGTGCCCGGCG 2395663 28 100.0 33 GTGCCCGGCG ............................ GTCATGCGGGTCCACACACAGACGGTCTACCGA 2395724 28 100.0 33 GGTCTACCGA ............................ GACGCCGCCGGGTTGAACAAGGTCCTCAACGGG 2395785 28 100.0 CCTCAACGGG ............................ ACTTCTTCAC ========== ====== ====== ====== ========== ============================ 22 28 33 GGATCACCCCCGCCTGCGCGGGGAACAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [31.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [185,411] Score: 0.18/0.18 # # Final direction: R [0.37,1.23 Confidence: MEDIUM] >NC_009953 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2936662 29 100.0 32 GGTGCACTCT ............................. GAGCAGGCGGCGGTACGCGAACCGCGTGAAGA 2936723 29 100.0 32 CGCGTGAAGA ............................. GCCAACATCGACATCACGATCCCGAAGACCAA 2936784 29 100.0 32 CGAAGACCAA ............................. GGGGTGAGTAGGGCCTGGCCGGACGGCACCGA 2936845 29 100.0 32 ACGGCACCGA ............................. CACGACTTCCTGCTCACCACCGACACACCCGA 2936906 29 100.0 32 ACACACCCGA ............................. AGGCGGCAACCGCCGGTGGTCGTCGAACCGCC 2936967 29 100.0 32 TCGAACCGCC ............................. TGCTTCTGCAAACGGTTCCGCGACGGCACCTC 2937028 29 100.0 32 ACGGCACCTC ............................. ACGGGGATGATCCCGAGCGCCGGACCACGCTT 2937089 29 100.0 32 GACCACGCTT ............................. GCCGAGCGGCACGCTCGCGGCCGGATCCGTTT 2937150 29 100.0 32 GGATCCGTTT ............................. GGCACCACTACGAGACGGGGTGTTGTTGTTCG 2937211 29 100.0 32 TTGTTGTTCG ............................. TCGATCGCTGTCGCCGCCCGCCACGCCCAAAC 2937272 29 100.0 ACGCCCAAAC ............................. GTGAGAACTG ========== ====== ====== ====== ========== ============================= 11 29 32 CTGCTCCCCGCGCATGCGGGGGTGATCCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.40] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [28.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [699,106] Score: 0.18/0.18 # # Final direction: R [0.18,0.64 Confidence: MEDIUM] >NC_009953 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2939492 28 100.0 33 GTTGACACAA ............................ CCCGGCCACCAGGCCGTTCTGCTCGGCGGGTGT 2939553 28 100.0 33 CGGCGGGTGT ............................ TCCCCATCCGACCCCGGACGAGAGCCCCGAGCA 2939614 28 100.0 33 GCCCCGAGCA ............................ CGTAGCCAGCGGCAACGACCGGATCGCGGTTCA 2939675 28 100.0 33 TCGCGGTTCA ............................ CTACCTGCGCGACCTTCACGACAAAGGAACCCC 2939736 28 75.0 39 AAGGAACCCC .....................------- TGATCCGATCGTGATGGTCGCCGGGGTGCTCGGCGACTA 2939803 28 100.0 33 TCGGCGACTA ............................ CGGCGCGACCACGGCCCAGAACGTCTTCCACTG 2939864 28 100.0 33 TCTTCCACTG ............................ TGGTGGGTCAAAGAGCAGGCACGCCGGGGTCGC 2939925 28 100.0 34 CCGGGGTCGC ............................ CGCGGCCTGCCCGCCCGGTTCCTGTTTGCCTTGC 2939987 28 92.9 33 TTTGCCTTGC GA.......................... CCGGTACGGCCGCGCGCCGAGCGTTGGGCACGT 2940048 28 96.4 33 TTGGGCACGT .....................A...... GTACGGGTCCTTGCGCATTTCGTTTGCTTTCGG 2940109 28 100.0 33 TTGCTTTCGG ............................ CACCGCCGGCACCCTCGGCACGCTGATCGACAC 2940170 28 100.0 33 TGATCGACAC ............................ CTCGACGGACCCAGCCGCAGCCAAGAACTGTGC 2940231 28 100.0 33 AGAACTGTGC ............................ CAGGCGCGATGGGCGCAGGCCGTCCGAGGGCGG 2940292 28 100.0 33 CCGAGGGCGG ............................ GAGGGCGTCACCTGGCAGACCATGCCGGCCCGG 2940353 28 75.0 39 GCCGGCCCGG .....................------- TGATCCCTGACCGAACACGTCCAGCCCGATCACGGTCTG 2940420 28 100.0 33 TCACGGTCTG ............................ CGCGTCCAACTGTGTGGAGGTCGCCACCAGTCC 2940481 28 96.4 33 CCACCAGTCC .....................A...... CGTGCAGGAGGTCATCGGCAGTGACCAGTAGGA 2940542 28 100.0 33 ACCAGTAGGA ............................ CTCGGCCAGGGAGTTGCCCTCCCACGCCTTCAG 2940603 28 100.0 33 ACGCCTTCAG ............................ CAGGCGCCGCTCCCCCACGTTCAGGTTCGGATC 2940664 28 96.4 33 GGTTCGGATC .........C.................. CGCCCCGCGGCGAACGACGCCAACCCCGCCGCA 2940725 28 100.0 CCCCGCCGCA ............................ GGCCCGGGCG ========== ====== ====== ====== ========== ============================ 21 28 33 CTGCTCCCCGCGCATGCGGGGGTGATCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.40] Score: 0/0.37 # Array degeneracy analysis suggestion: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [36.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [74,727] Score: 0.18/0.18 # # Final direction: F [0.68,0.55 Confidence: LOW] >NC_009953 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 5064111 36 100.0 40 CTCCCGAGCC .................................... GCGTCTCGGATGACCTCGCCTATCGGCTCGGCCACGTGCA 5064187 36 100.0 36 GCCACGTGCA .................................... GGACTGGGCCGACGAGACACTCACCTCCTGGCGGCG 5064259 36 100.0 39 CCTGGCGGCG .................................... GAATCCCGGGCATGAGCGCGGCGGCGACCGCCTGTAGCT 5064334 36 100.0 37 GCCTGTAGCT .................................... GACCCGGCGGGCCATCCTCAACGTCGGCCAGCTCCTG 5064407 36 100.0 40 CCAGCTCCTG .................................... GGGGGTTACTGCAGAGCTCCCGGTGCCGCAGTGGGAGGGT 5064483 36 100.0 38 GTGGGAGGGT .................................... GCTACCGCCGGTGGCGGTGAGGGTGTTGGTGCGTGCGT 5064557 36 100.0 39 GTGCGTGCGT .................................... GTACCCAGGTGCGGGTACAGGTCCGAGGCCGGATCAGTC 5064632 36 100.0 38 CGGATCAGTC .................................... GACGAGGTCACCCTGTGTCTCAGCCAAGCACAGGGGGT 5064706 36 100.0 38 CACAGGGGGT .................................... GCAAGTCGTGTTGGCGTGGACGGGCGCGCACATGCGCG 5064780 36 100.0 39 CACATGCGCG .................................... GGAGGTCGACGGCCGACGTGTGCAACTCGCCGAGTCGCA 5064855 36 100.0 37 CCGAGTCGCA .................................... GGTCTCCGCCAGTGGGTTGTCAGGCTGGACTCGCAGC 5064928 36 100.0 39 GACTCGCAGC .................................... GACCGAAGGCGAGGCGCTCGCGTCGCTGAAACTGCGCGA 5065003 36 100.0 38 AACTGCGCGA .................................... GCGACGAGCGCGAGTGCGGCGATCAGCGGTGCGATCCG 5065077 36 100.0 39 GTGCGATCCG .................................... GGGCGGCCGCTCGGTCGGTGGTGGCGTTGGCGGTCGAGA 5065152 36 100.0 39 GCGGTCGAGA .................................... GTGCACACCCCGGTCGGTCAGCCCGGTCTTACGGACCAG 5065227 36 100.0 39 TACGGACCAG .................................... GATCGCAGCACCGCCGGCCACGGCGAGACAGTCGCAGCC 5065302 36 100.0 39 AGTCGCAGCC .................................... GCTCCGCGCGGCCGACGCGATGGGCGTGGAGCGCCGCGA 5065377 36 100.0 38 AGCGCCGCGA .................................... GAGACTGTCGACGAACACCACATCCGCGTCGTGCTGCC 5065451 36 100.0 39 TCGTGCTGCC .................................... CCACAAGCCCTTCATCGGCCCATCGGGCCAGCCGGGGGT 5065526 36 100.0 39 AGCCGGGGGT .................................... CCGGGTGGTCCGCGAGCACCTTGGCGTCACCGGCGATTG 5065601 36 100.0 38 CCGGCGATTG .................................... CGTCAGCCACGACATCTCACCGAGCGCGGCCTGCACCG 5065675 36 100.0 36 GCCTGCACCG .................................... CAGCCAGGACTCGATGTCGTCAAGGTCGTAGCGGGC 5065747 36 100.0 38 CGTAGCGGGC .................................... CGGCCACCTAGTCGCGCAGGTCGGCGACCTCGGCGCAT 5065821 36 100.0 41 CTCGGCGCAT .................................... CTTTCGCACCATGGCCGACCTCCAGGACGGAAAGCCGTCGA 5065898 36 100.0 39 AAGCCGTCGA .................................... CCGCCATGTCCGTACGATTTCCTCGCGAGTCTCGGGGCC 5065973 36 100.0 42 TCTCGGGGCC .................................... CGATGGTCAGCCGGTCCCCGACGTCAACCGCCGCGGCGGCGC 5066051 36 97.2 38 GCGGCGGCGC .T.................................. CTGGTAGACAACTGATGACCGCCCCCGCCAGCGTTCAC 5066125 36 100.0 37 CAGCGTTCAC .................................... CCGAATCGTCTCGACGGAGACGCCGGCACGCTCCGCT 5066198 36 100.0 39 ACGCTCCGCT .................................... CGTGTTCGGCGCGGGCTTTCTGGACCCGGATCGGGTCGC 5066273 36 100.0 38 ATCGGGTCGC .................................... CCCGGTGACCCCCGCAAGCTCCACGAGAGGTGGGACGA 5066347 36 100.0 39 GGTGGGACGA .................................... CTCCCCGTGCGCGTACGCCACGGCCGGTGGTTTCCACGT 5066422 36 100.0 GTTTCCACGT .................................... CATGCCCGCG ========== ====== ====== ====== ========== ==================================== 32 36 38 CCTTCACCGACCCAACGCGGTCGGTCTCCGTTGCGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-11.70,-13.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [33.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [206,1329] Score: 0.18/0.18 # # Final direction: R [0.68,0.92 Confidence: LOW] >NC_009953 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 5587962 28 100.0 33 GGAGCCGGTG ............................ AGGTATGAGCGTTTACTCCTGCTGGTTTCGGGG 5588023 28 100.0 33 GGTTTCGGGG ............................ GTCAGCGCCCGTACCCGAATCCACCACCGGGGA 5588084 28 100.0 33 CCACCGGGGA ............................ GGCGGTGGTCGTGGTGTGGTGGTTGTGGCGGCA 5588145 28 100.0 33 TGTGGCGGCA ............................ TGCGGGTCGATGACGACAGTGCCCCGCCCGGCT 5588206 28 100.0 33 CCGCCCGGCT ............................ TGTCCAGCGGCGCATTCCCGGCCGGCGTGATGG 5588267 28 100.0 33 GGCGTGATGG ............................ GTCGTCGCCGCGGCTGACCTTGACCGTCTGCAC 5588328 28 100.0 CCGTCTGCAC ............................ GCTTCCTGACC ========== ====== ====== ====== ========== ============================ 7 28 33 GGATCACCCCCGCGTGTGCGGGGAACAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.40,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [36.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [574,294] Score: 0/0.18 # # Final direction: F [0.37,0.27 Confidence: LOW] >NC_009954 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 1258730 25 100.0 45 CAATGTATTA ......................... TATGGAACACATGTATAGATAGAGACCTAGAAACCTACACGAGTT 1258800 25 100.0 40 TACACGAGTT ......................... TATCCGTTTAGTGTTCCCCTTGCTTCCACGTGGAGGATTC 1258865 25 100.0 43 TGGAGGATTC ......................... TTCCCACTTCCTTAATGTACTCATAATTTTTTAATTATTTTTT 1258933 25 100.0 47 ATTATTTTTT ......................... TTCTAAATAATTTAATGAATCCTGACACAAGTGACTTAATGATTCCT 1259005 25 100.0 40 AATGATTCCT ......................... TCAAAATTGAGCGCACTAAAGATGGCGGTAGGTAATTAAG 1259070 25 100.0 39 GGTAATTAAG ......................... CAATATTATCATGGTTTATGCATAAAGTTACAGGTTCTA 1259134 25 100.0 43 ACAGGTTCTA ......................... GTAATTATATATATCACTTAACGTTACTTCGTTAAACGCGTAG 1259202 25 100.0 40 AAACGCGTAG ......................... CTGATGTATCCATATTTCTGCAGAATAGAGTCCGGTATTT 1259267 25 100.0 TCCGGTATTT ......................... TTTCCTTGATT ========== ====== ====== ====== ========== ========================= 9 25 42 GAAAATCCCAAAAGGGATTAGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.90,-5.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [286,127] Score: 0.18/0.18 # # Final direction: F [0.45,0.37 Confidence: LOW] >NC_009954 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 1583088 25 96.0 40 AACATGCGTA .............T........... ATGAAAAAGCCATAATTGTTACAGGGAAAAAGGAAAATAA 1583153 25 96.0 46 AGGAAAATAA .............T........... GGATGCATTCCCCTACTCCATAACAACCGTGAGGGGTTTGATTAAT 1583224 25 100.0 43 TTTGATTAAT ......................... TTAATTATTAAGTCTTTATCCTTAATTTTTTAATTCGAATTCC 1583292 25 100.0 TTCGAATTCC ......................... TGGATTGATTT ========== ====== ====== ====== ========== ========================= 4 25 43 CTTTCTAATCCCTCTTGGGATTTTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.80,-4.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [124,444] Score: 0.18/0.18 # # Final direction: F [0.37,0.18 Confidence: MEDIUM] >NC_009954 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 1588509 25 100.0 43 NNNNNNNNNN ......................... CCGCAGACGTTGCTCAGCTTGTTTAACAGTTTAGCGAAGCCGC 1588577 25 100.0 42 NNNNNNNNNN ......................... GATAAGGCCACGGTTTCAAGTACATTGAGGAATCGTTACAAT 1588644 25 100.0 42 NNNNNNNNNN ......................... TGTATGATAATTCCACCTTAGTGCTAGTTCCCCATGAACCTA 1588711 25 100.0 40 NNNNNNNNNN ......................... GGCGTATAATTGAGTACCGTTACTGAACATGAACTTGAGG 1588776 25 100.0 39 NNNNNNNNNN A...TC................... TGTAGTAACGTGGAAATAAAGGTACACTTGTAGCAGGTA 1588840 25 100.0 40 NNNNNNNNNN ......................... TTGTGGTCGTAGAAGTCGAAACCTAACCCTATTAAGTCTC 1588905 25 100.0 46 NNNNNNNNNN ...........G............. TTTACAAAATCCTCAAATCCCTCAAATTTTTCCATAGGGAATCAAG 1588976 25 100.0 43 NNNNNNNNNN ...........G............. TAATTACAGCTGTGAACTCAGGAAACATAAAATATATATCACT 1589044 25 100.0 43 NNNNNNNNNN ...........G............. GCTTATGATGATTGCCGTTGATGGTAAGACATAATTAATCACT 1589112 25 100.0 46 NNNNNNNNNN ...........G............. TTATCACTACTCCAATGCAATGAACCCAGCAAGTCTTCATACTCAT 1589183 25 100.0 44 NNNNNNNNNN ...........G............. ATAACTTATGCTAGGTATTTCAATTACCCAATGGTCATGCCTAT 1589252 25 100.0 1 NNNNNNNNNN .T.............A.......G. NNNNNNNNNN ========== ====== ====== ====== ========== ========================= 12 25 42 GAAAATCCCAAAAGGGATTAGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.90,-5.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [73.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [360,27] Score: 0.18/0.18 # # Final direction: F [0.86,0.37 Confidence: MEDIUM] >NC_009954 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 1611614 23 100.0 44 ATAACTCAGA ....................... TATTGCATAATCAAGCAATTTAGCATAACCCCATCCGCTTACGA 1611681 23 100.0 49 CCGCTTACGA ....................... ATATTGGTATCATTGAGTTCACCAATACGTTTTATAACAAGTGACCTGA 1611753 23 100.0 46 AGTGACCTGA ....................... GTCAGGTGGGTTGATAACCAATTCAAGCCCATAGATATACTTGAGA 1611822 23 100.0 46 ATACTTGAGA ....................... TGTTTCCGAAGGCGTTGCTCCACGTTAGGTACCCGTTGATAATCGT 1611891 23 100.0 42 TGATAATCGT ....................... CATGTAGGGGATAGATCCCTATGCACCCCGATTATATCAAGT 1611956 23 100.0 45 TATATCAAGT ....................... TGCATTATGAGGGCGTCCGCTATTAAACCGTGGCCTGGGGTTAGA 1612024 23 100.0 TGGGGTTAGA ....................... GCATGGGGTG ========== ====== ====== ====== ========== ======================= 7 23 45 AAATCCCAAAAGGGATTAGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.22%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [68.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1256,42] Score: 0.18/0.18 # # Final direction: F [0.45,0 Confidence: MEDIUM] >NC_009954 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================== ====== 1700150 26 96.2 40 AATCCCATTT .........................C ATTCCCCTACTCCATAACAACCGTGAGGGGTTTGATTAAT 1700216 26 100.0 42 TTTGATTAAT .......................... TAATTATTAAGTCTTTATCCTTAATTTTTTAATTCGAATTCC 1700284 26 100.0 40 TTCGAATTCC .......................... GGATTGATTTAAGCGGTAACGGTTACAATGCAGTATTCGT 1700350 26 96.2 CAGTATTCGT .............T............ GAGCTATCAG ========== ====== ====== ====== ========== ========================== 4 26 40 CTTTCTAATCCCTCTTGGGATTTTCT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.54%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [63.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [4,272] Score: 0.18/0.18 # # Final direction: R [0.37,0.45 Confidence: LOW] >NC_009954 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 232508 25 100.0 41 CTTTGATGAC ......................... TTTCTCTCTCTTTCACACTACGTACATGGATACAGATATAT 232574 25 100.0 44 ACAGATATAT ......................... TAGTGACACGAAGTTCACTGTATTCGACATTAAGGTAGACTATA 232643 25 100.0 41 GTAGACTATA ......................... TTGTTTGGTTGAGAATCTGCTCAATAGCGGAGTAAGCCGAT 232709 25 100.0 44 GTAAGCCGAT ......................... ATGAAAAATTCATGTTAAATTAATTAGAAAAATCATGATTTTCA 232778 25 100.0 43 ATGATTTTCA ......................... TTCACAGTCGGTAACTGCCACACCTGGTTACCGTTAAACCCCA 232846 25 100.0 TTAAACCCCA ......................... CGATTTATTGG ========== ====== ====== ====== ========== ========================= 6 25 42 CTTTCTAATCCCTTTTGGGATTTTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.80,-4.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [41,381] Score: 0.18/0.18 # # Final direction: R [0.37,0.45 Confidence: LOW] >NC_009972 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1533013 37 100.0 37 ACACAGAGGT ..................................... GTTGGAGTTCCAACAGTTGGGTATGGACTGTCACTTG 1533087 37 100.0 35 CTGTCACTTG ..................................... ATTATCATGCGTTGGGTTAGAAGAATCCAAACTAT 1533159 37 100.0 38 TCCAAACTAT ..................................... TCTGAGACATGGACGATCCAGAAACGTGTGTTTTATGC 1533234 37 100.0 37 TGTTTTATGC ..................................... AATTTTAAACGAACTGTTGTAGGCGTTGCAGTAAGAT 1533308 37 100.0 38 GCAGTAAGAT ..................................... ACTCGCGGTCGATGGTTAAAGCGGTCGATGGAACATGA 1533383 37 100.0 37 TGGAACATGA ..................................... GTTGGAGTTCCAACAGTTGGGTATGGACTGTCACTTG 1533457 37 100.0 35 CTGTCACTTG ..................................... ATTATCATGCGTTGGGTTAGAAGAATCCAAACTAT 1533529 37 100.0 38 TCCAAACTAT ..................................... TCAGGTAGAGACGACTACCTGCTCGCCGTCAAGGGCAA 1533604 37 94.6 TCAAGGGCAA ..........................C......C... TCAGTAAGATATACGTCCAAATCTAATTCGAGCTAT ========== ====== ====== ====== ========== ===================================== 9 37 36 CTTAGAATGGACACAATCCTCTGGCGGGGATTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.05%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.20,-3.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [3518,569] Score: 0.18/0.18 # # Final direction: F [0.96,0.27 Confidence: MEDIUM] >NC_009972 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1605245 37 89.2 38 CAGATAACGC --...T........A...................... CTAAACCTAAACGATTCTAGTACCAACTGGACATACCG 1605320 37 100.0 37 GGACATACCG ..................................... AGGCTATTGACGCGATGTTTATCCCTATGTGGGAAGA 1605394 37 100.0 38 TGTGGGAAGA ..................................... ACCTTTAATTCGATTCAAACCGTCGCGTAAAACTTGGG 1605469 37 100.0 AAAACTTGGG ..................................... ACCTTTAATTCGATTCAAACCGTCGCGTAAAACTTGGG ========== ====== ====== ====== ========== ===================================== 4 37 37 GTTTTAATCCCCCAGAGAGGATTCAGGTCTTTCGAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.40,-7.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [60.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [283,237] Score: 0/0.18 # # Final direction: R [0.27,0.78 Confidence: MEDIUM] >NC_009972 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1607560 37 100.0 39 TACGGTCTGC ..................................... CTTGGCTTAGATACGGCCAAAATGTATTATTACACGGCA 1607636 37 100.0 41 TTACACGGCA ..................................... TTATTATTAACCGCATGGGTGGCTATGGGGCCATCAACCCC 1607714 37 100.0 40 CATCAACCCC ..................................... AATGAATGCGGTAGAGAAATTTCGCCCCAGAATCGATTTA 1607791 37 100.0 36 AATCGATTTA ..................................... CGATAGTTCACCCGTTCTGAGGGTACTCACCCAAAG 1607864 37 100.0 42 TCACCCAAAG ..................................... GCGCTTGAGATAGCCCAGCCGCCCGCCACCAACGTTGCCAAG 1607943 37 100.0 37 CGTTGCCAAG ..................................... TTTGTCGTAGACAGCTACGATTTGATCGTAGTGCTCA 1608017 37 100.0 43 GTAGTGCTCA ..................................... AACCAAATTCCTGTGATCGAAAATGGCTTCCTGAAGGGATGTT 1608097 37 100.0 39 AAGGGATGTT ..................................... ATAGCCGAGACTGGCGACATCGCGGGTTCAATTATATGG 1608173 37 100.0 40 AATTATATGG ..................................... CAACGTCAGCGGGGTGCTGGCTGTAGCTGCGGATTTGATG 1608250 37 100.0 39 GGATTTGATG ..................................... AATAAGCAAGCTGATAGTATGGTTCGTAGCGCCAAAGGT 1608326 37 100.0 40 CGCCAAAGGT ..................................... TAATCGCTCACTAGCCTATTGAATTGGCGGGGCCAATGTG 1608403 37 100.0 39 GGCCAATGTG ..................................... CAAGAACTTGCCCAAGTTGCTCGAACGTATTTCAAGTAG 1608479 37 100.0 34 TTTCAAGTAG ..................................... CTTGTAAGCGTTTTGATTTGACCAGTGTTGGGCG 1608550 37 100.0 GTGTTGGGCG ..................................... ATACCCCATT ========== ====== ====== ====== ========== ===================================== 14 37 39 GTTTTAATCCCCCAGAGAGGATTCAGGTCTTTCGAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.40,-7.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [378,493] Score: 0/0.18 # # Final direction: R [0,0.37 Confidence: MEDIUM] >NC_009972 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================================== ====== 2565275 38 100.0 36 ACACAGAGGG ...................................... AGTTATAATCTCAACCATCACCTTACTAAAGGCTAC 2565349 38 100.0 33 TAAAGGCTAC ...................................... CATGTGCCGCCATTGATCGAAACCTGGCCGGAA 2565420 38 97.4 CTGGCCGGAA .....................................A TTTCTTGCTTGATTACTTCAGTCAAATCTGGATTATTTG ========== ====== ====== ====== ========== ====================================== 3 38 34 CTTGGAATGGCCTTAATCCTTTGGCAGGGATTTAAACG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.26%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.20,-3.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [45.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [594,290] Score: 0.18/0.18 # # Final direction: F [0.96,0.27 Confidence: MEDIUM] >NC_009972 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2842559 37 100.0 34 NNNNNNNNNN ..................................... AGCAAGCACGTTGGCAGCTTGCTATCATAGAGTT 2842630 37 100.0 33 NNNNNNNNNN ..................................... GGCCCGCCGAATCCCATGGCGTTTAAATATGGC 2842700 37 100.0 34 NNNNNNNNNN ..................................... CTAGCCAGTATCCAAAGCCACACATGGTTAAGCC 2842771 37 100.0 32 NNNNNNNNNN ..................................... GCTGATGCTTGTAGTGAAACAATCATTGCTGG 2842840 37 100.0 34 NNNNNNNNNN ..................................... TTCTTGATGAGTGGCCGCTCAACGCGGAACAGTG 2842911 37 100.0 36 NNNNNNNNNN ..................................... CGAATCAGGCAAGCCGTTGAATCGGGCTAAGCAGCG 2842984 37 100.0 35 NNNNNNNNNN ..................................... TAACCGTGATTGGCCATGTCAAAGAACACAACTGG 2843056 37 100.0 32 NNNNNNNNNN ..................................... AGCGCTCGTCAATGCCCGCGTGCGGTTGCTGA 2843125 37 100.0 35 NNNNNNNNNN ..................................... GATTCCTTGATCACCTGTTGCGGCAGCACCCGTTG 2843197 37 100.0 35 NNNNNNNNNN ..................................... CTCAGGGTCACAGATTCAACGCCAGGCATTGCCTC 2843269 37 100.0 33 NNNNNNNNNN ..................................... AATTCATAGACTCAACAGCAACCGAATCAGTGA 2843339 37 100.0 35 NNNNNNNNNN ..................................... ATGACCTCTTGCCTGCGGTTGACGACACCCCGCCG 2843411 37 100.0 33 NNNNNNNNNN ..................................... AACACAATCGTGGTGTTGCCAGCAATCGCGGGA 2843481 37 100.0 35 NNNNNNNNNN ..................................... GATCTGTTCAAATATCTCTACAATCCAGCGACTAA 2843553 37 100.0 32 NNNNNNNNNN ..................................... CAGCGGCATGGCGGTGGCTTTCAAATGCTCAA 2843622 37 100.0 35 NNNNNNNNNN ..................................... ACGGCGTGATGGAAGCAACGGCGGACACACGCGGG 2843694 37 100.0 33 NNNNNNNNNN ..................................... GTCCCATTATAGACCGAGATTTGTGCGCCCCAA 2843764 37 100.0 37 NNNNNNNNNN ..................................... TTCCATTTAGCGCCATTCATTGCCAGCATATAGCCAG 2843838 37 100.0 34 NNNNNNNNNN ......................C.............. CATTTGCTGATTTGCAAGTAAGCGAATGTACCAT 2843909 37 100.0 34 NNNNNNNNNN ..................................... GCGCGTTTGCGCTTGGCGTGTGCCAGTTGCACAT 2843980 37 100.0 35 NNNNNNNNNN ..................................... CTTGCCAACGATAATGAGTTCTATTTTTTTCTCTG 2844052 37 100.0 33 NNNNNNNNNN ..................................... TTCTCTTGCAACATATAGGCCTCCATAAAACGC 2844122 37 100.0 36 NNNNNNNNNN ..................................... GTACTTCACGTCGTCGCGTACTGCCTTGATCTCGGA 2844195 37 100.0 33 NNNNNNNNNN ..................................... CTCAAAATCCGCCGTAATCGCTATAAGCTGTTT 2844265 37 100.0 34 NNNNNNNNNN ..................................... CAAGCTGCTTTGTTTTATATATCTCTTTGTAGAG 2844336 37 100.0 36 NNNNNNNNNN ..................................... ATGCGCGGCGAATTGTAGCGCGTCTGTCGTCGATTC 2844409 37 100.0 35 NNNNNNNNNN ...................T................. TTTGAGAGCGTGATTACACGCGCACCAGCGCGGCG 2844481 37 100.0 36 NNNNNNNNNN ..................................... TCAAGATAAACCGCGCCATCCACATTATGACCTCGC 2844554 37 100.0 35 NNNNNNNNNN ..................................... CAATATACATACTTGCCGTTGCTGATAATATCGGT 2844626 37 100.0 34 NNNNNNNNNN ..................................... CATAGCCTACCATTTACACTAGCTTTTGAGGTTG 2844697 37 100.0 36 NNNNNNNNNN ..................................... CCTTGATGCACTTGACATTGCCATGACCAAGCTTGA 2844770 37 100.0 38 NNNNNNNNNN ..................................... GCGTTTGCGATGGCCGCAGCCTACGAATTGACCTACGT 2844845 37 100.0 35 NNNNNNNNNN ..................................... TCTGGCAAGGCATCATCTTGGATGACTTCAACTTG 2844917 37 100.0 37 NNNNNNNNNN ..................................... TTTTCATACTGCCCCTTGCTCAATCAAATATTGGCCC 2844991 37 100.0 35 NNNNNNNNNN ..................................... CTGACAATCATCGCACCTTCATGGGTGTAGCTTCG 2845063 37 100.0 36 NNNNNNNNNN ..................................... ATGACCATGAAAGAACAAATCACGGGCCGCGTGACC 2845136 37 100.0 37 NNNNNNNNNN ..................................... GTCTGTTCTCAACACCAGGCTTAGAGCGCTCAGTCTT 2845210 37 100.0 34 NNNNNNNNNN ..................................... GCACAACGTGCCATGCCGATGTCTCAAGAACATC 2845281 37 100.0 37 NNNNNNNNNN ..................................... GTAGGGATAAATTGAGCCTCGTTTATTTTTCTTCAAC 2845355 37 100.0 36 NNNNNNNNNN ..................................... TCCCCGTTCCGGCTCCGCTCAAACGGGTCATGTCGG 2845428 37 100.0 34 NNNNNNNNNN ..................................... CGGGCACGGGGATACCGAGGCGGTTGGCGTTTTC 2845499 37 100.0 32 NNNNNNNNNN ..................................... TGAATACAGATGTATTTGATATCACTGAGTAA 2845568 37 100.0 36 NNNNNNNNNN ..................................... ATTGCAATGGAAATGATGGACGGACTAGGAACCTAT 2845641 37 100.0 35 NNNNNNNNNN ..................................... GCCGCCCTCTTTGTGTGCATGGTCGCAACTGCGCT 2845713 37 100.0 35 NNNNNNNNNN ..................................... CTAACACTGGTAACATTGCGTAAATCGGGTACGAC 2845785 37 100.0 35 NNNNNNNNNN ..................................... CACCCTATGAAGTACAGCTAGGCTTGCTTGGGAGA 2845857 37 100.0 34 NNNNNNNNNN ..................................... TGCTGAGCGATGAGCATAAACAGCGCGTCTACTG 2845928 37 100.0 37 NNNNNNNNNN ..................................... GACTTGGGCGAGCGCACGGCTGCCACAGTACGGGCAG 2846002 37 100.0 33 NNNNNNNNNN ..................................... TAGGCTTGGTGCGATGATCGCGTAGCCGCCCTC 2846072 37 100.0 35 NNNNNNNNNN ..................................... GACAATTAAGGGTGGCACGCCGAACGCCATACAGA 2846144 37 100.0 34 NNNNNNNNNN ..................................... TTTGCCAGACCTTGCTACTATTGATTTCGTCTTG 2846215 37 100.0 35 NNNNNNNNNN ..................................... AACGCCTTGGAGCCACCGACGAGCGTGATCTTTGG 2846287 37 100.0 34 NNNNNNNNNN ..................................... TACGGTTGGTTTATCTGGGCGTGTTTTGATTTAG 2846358 37 100.0 32 NNNNNNNNNN ..................................... ATCAGCACAGAACATCAGCATTTGATCGGTGT 2846427 37 100.0 35 NNNNNNNNNN ..................................... AATTTGATATTGCAGACGGCCAATACTGGCTACCG 2846499 37 100.0 35 NNNNNNNNNN ..................................... CTACGGGTCAGGCCGTTTTGCACGCTGGTGATGCC 2846571 37 100.0 35 NNNNNNNNNN ..................................... CTACGGGTCAGGCCGTTTTGCACGCTGGTGATGCC 2846643 37 100.0 36 NNNNNNNNNN ..................................... ATGTGGTCGAAATCCCCCGCAGGAATGGCTATGACC 2846716 37 100.0 34 NNNNNNNNNN ..................................... AGTTTTCCAGCTTCAGCCCTTGGCGCTTGGCATA 2846787 37 100.0 35 NNNNNNNNNN ..................................... TTCAGCGTGGCGTTGATAATCTCAAGAAGCTTGGG 2846859 37 100.0 35 NNNNNNNNNN ..................................... CTCGGTTGGTTCCAAGTACTGGCCGTTGTTACGAT 2846931 37 100.0 35 NNNNNNNNNN ..................................... CGAATTTAATCGCATTGATTGAACGGCCTAACGCT 2847003 37 100.0 35 NNNNNNNNNN ..................................... CCGAATCATGACAAGAAGTTTTGATAACTACAAAC 2847075 37 100.0 34 NNNNNNNNNN ..................................... AATCTCATCACAAGCCGAGGCAATCCAATAGGCC 2847146 37 100.0 38 NNNNNNNNNN ..................................... TGTCATCCCAACTCATGTTAATAGCATCAAGATGGTTG 2847221 37 100.0 35 NNNNNNNNNN ..................................... ACGGATTTTTTGTCAACCAAAGGCATCATAGAGGA 2847293 37 100.0 37 NNNNNNNNNN ..................................... AACGCAAACCATGCAATAACGCTGAGTGCGATCATCG 2847367 37 100.0 37 NNNNNNNNNN ..................................... GCCGCGCAAGTCACCCTTGCCGCTCAAGCCCAGCGAG 2847441 37 100.0 35 NNNNNNNNNN ..................................... TCGAGTGGTAGTGGTTTAGCCTTGCCACCACCAGC 2847513 37 100.0 35 NNNNNNNNNN ..................................... TGAATATGAATTTGGATGCCTACTGCAACTTCCCT 2847585 37 100.0 35 NNNNNNNNNN ..................................... GGCGCGTTTGCTTCGCATACAGCCCTTGCTTGTAG 2847657 37 100.0 33 NNNNNNNNNN ..................................... CTGAGCTTGAGCAATCACGGTTTGCGATACAGA 2847727 37 100.0 34 NNNNNNNNNN ..................................... CGCTGATGCTCGATCATCTGCGGCGTTGGCTCGA 2847798 37 100.0 33 NNNNNNNNNN ..................................... CTACGCCTGTTTCCTTGACTGATGTGCTGATTG 2847868 37 100.0 35 NNNNNNNNNN ..................................... TTCACAAAATCAACTTTGCCCTTCGCGGTGTGTTG 2847940 37 100.0 39 NNNNNNNNNN ..................................... ATGAAGTATAATTAAGCTAATCTATTGGAGGATTCAGCT 2848016 37 100.0 35 NNNNNNNNNN ..................................... GATATGTTCCGCTTGAGTGGCAACCAGCAAATCAA 2848088 37 100.0 36 NNNNNNNNNN ..................................... TCCTAGTGAGGTCAAGGCAATGCAACACGATATAGC 2848161 37 100.0 34 NNNNNNNNNN ..................................... TCGACGGAAGGCCGGATTATTAACTTTCCAACCG 2848232 37 100.0 37 NNNNNNNNNN ..................................... TAGTGGTAAACGCGGTTGCAAGCGTGGCCGTGAACGT 2848306 37 100.0 36 NNNNNNNNNN ..................................... CGCTTGAATGAGCCGCTAATCATCGCTGGCCTCGTT 2848379 37 100.0 35 NNNNNNNNNN ..................................... GTGAGTGAAGCGCCAGCCTATACCTATGAGCGCAC 2848451 37 100.0 36 NNNNNNNNNN ..................................... GACAACACTGGGCGCACACGATGGATTGATTGCACG 2848524 37 100.0 34 NNNNNNNNNN ..................................... GCTTGGATCAAGTTGGCGAATATAGGTCAGGCAG 2848595 37 100.0 36 NNNNNNNNNN ..................................... AAATAATGAATAATCTTATCGTTTTGACCGTTGTCA 2848668 37 100.0 36 NNNNNNNNNN ..................................... GGAGTTGATTGGTATCCCGATGATTGGGATGCCGTA 2848741 37 100.0 34 NNNNNNNNNN ..................................... TATGTCAAGGAAAGCTACCGCGTCTTTGGCGGTG 2848812 37 100.0 35 NNNNNNNNNN ..................................... CATTGCAAACTTGCCTGTACTGTGGTCAAAGCCGA 2848884 37 100.0 39 NNNNNNNNNN ..................................... TTGCTCGGCACGACAAGCAAGCTTGATATTATCCATTTG 2848960 37 100.0 36 NNNNNNNNNN ..................................... GGCACACTACAAGGCATCCCCCTCGTCCTCTATCGG 2849033 37 100.0 36 NNNNNNNNNN ..................................... ATTTTACCTCGGCAGGCGGCGTAGCGAATACACAAG 2849106 37 100.0 37 NNNNNNNNNN ..................................... CTGACAAGATCCGCAACGATGCCAACGCCGTGTATGC 2849180 37 100.0 37 NNNNNNNNNN ..................................... GACCTCATCAACTGTGTACGCATCATGCAAGGCGCAT 2849254 37 100.0 35 NNNNNNNNNN ..................................... GCCCGTTGGGCCTGTTACCGGATCGGGCAATGTGA 2849326 37 100.0 37 NNNNNNNNNN ..................................... CCGTGCTTGTGGTAGATTTCATACATGTAAGCATAGC 2849400 37 100.0 35 NNNNNNNNNN ..................................... CTTGCTTCGTCTTTGACTTGTAATGACCGATCGAT 2849472 37 100.0 33 NNNNNNNNNN ..................................... GAAGTCGATCAAGCTCGATGCCTCGCCGCGTGT 2849542 37 100.0 36 NNNNNNNNNN ..................................... CTTTTTCTGGCACATATTCAAAGATGATCGCGGTTT 2849615 37 100.0 39 NNNNNNNNNN ..................................... CTATGCTGTGGCTGATTTTTCGTTAGGAGTAGCAACCAT 2849691 37 100.0 34 NNNNNNNNNN ..................................... GCCCACTCTGAGCGGTATTGATTGAGTAGGCCTT 2849762 37 100.0 33 NNNNNNNNNN ..................................... TACTGCCTATCTGCTCATCATGCTGGTTGCCAG 2849832 37 100.0 34 NNNNNNNNNN ..................................... AATAAAATCGCGGTGGCCATTGCCAGTGTTTGGC 2849903 37 100.0 35 NNNNNNNNNN ..................................... GATTCTGACATAGTGACTAAACTCCAAATAAAGGC 2849975 37 100.0 37 NNNNNNNNNN ..................................... CTGATCCGCTGGCCGTGGCCCTACGCCGGACATTGCG 2850049 37 100.0 36 NNNNNNNNNN ..................................... AATCCAGTATTATCCTGATTCCTGCCACGCCGCAGG 2850122 37 100.0 38 NNNNNNNNNN ..................................... CCATTCTTGAATTGTTTGACAGCTACGGGACGCGCTTA 2850197 37 100.0 38 NNNNNNNNNN ..................................... ATCAGAAACAAGCGGATGACGGGCTTTGTGGAAATCAA 2850272 37 100.0 36 NNNNNNNNNN ..................................... TTATCGATCGGCAATCCCCCAGCTGGGGCCAGTCTT 2850345 37 100.0 34 NNNNNNNNNN ..................................... GGGCTGATGTAGTGCTGAATGCCGCTGTTGATAA 2850416 37 100.0 33 NNNNNNNNNN ..................................... ACTATCGCATAATGGGGCCGCCAACAGGAATTG 2850486 37 100.0 35 NNNNNNNNNN ..................................... GCTTTTTCTATGTGGAGTAAATGCAATGTATGATG 2850558 37 100.0 35 NNNNNNNNNN ..................................... TGATAGCCAAGTGATTGAGGCGAGTGGAATGGGGC 2850630 37 100.0 38 NNNNNNNNNN ..................................... CTGATACTGATATTATTCGTGGCCTCATCAACCAGGCA 2850705 37 100.0 35 NNNNNNNNNN ..................................... CCTACTCTTGATCACGTTGGCGTTCGCTCCGGTAC 2850777 37 100.0 37 NNNNNNNNNN ..................................... TTGATCAGGCCAGTCAGGTTCGTAATGACGATTGGCA 2850851 37 100.0 33 NNNNNNNNNN ..................................... ACTCAGTAGAATTTGATCGCACGAAAGTGCTGG 2850921 37 100.0 34 NNNNNNNNNN ..................................... GCCTCAATGGCATGAGCGAGAACACATTGTATAG 2850992 37 100.0 34 NNNNNNNNNN ..................................... TGAAAGCAGCTATTCAGGCAAATCTGCATAATAA 2851063 37 100.0 36 NNNNNNNNNN ......................C.............. ATTCATTCATAGTATACGTCCTTGTGTGTCTAAATA 2851136 37 100.0 37 NNNNNNNNNN ..................................... ATATAAAACTCAATCCATGCAAGAATTGCGGGCATGT 2851210 37 100.0 34 NNNNNNNNNN ........C.............C.............. AATAGTTTGTTATCCTCGCGGTAGCCGATTTTGA 2851281 37 100.0 34 NNNNNNNNNN ........C.............C.............. GCCACGATCGTGCACGCGAGTGAAGATTTTGCGA 2851352 37 100.0 35 NNNNNNNNNN ........C.............C.............. AACGGGGTTGGATAGGGACTGGGAAAGCCATTCGA 2851424 37 100.0 36 NNNNNNNNNN ........C.............C.............. ATTGAGCTTGGCTGGCAAGCAACCCCGTTGGTGTGC 2851497 37 100.0 35 NNNNNNNNNN ..................................... TTGCCGTCGTAATGGCCTGCGGTTTCTGAGCGCGT 2851569 37 100.0 1 NNNNNNNNNN ..............................AA..... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 126 37 35 GTTCCATAAATAAAGAATCCCTACAAGGGATTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.50,-7.40] Score: 0/0.37 # Array degeneracy analysis suggestion: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [48.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [226,528] Score: 0.18/0.18 # # Final direction: F [0.68,0.18 Confidence: MEDIUM] >NC_009972 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3042778 37 97.3 38 ACACCCAGGT ........................C............ CTGAAGAAATCGCGGCGATGAAGGCAGAGCTACCAGAA 3042853 37 100.0 36 GCTACCAGAA ..................................... ACAGACTGTACATAGCCAAGCTGCAGGATGTCCTGC 3042926 37 100.0 35 GATGTCCTGC ..................................... GTCCCCTGAATCTGATCATCCGACCACGGCGTGGT 3042998 37 100.0 36 ACGGCGTGGT ..................................... CCTTACCATAAGCGCCACAGTTGATGCAGCGCAAGC 3043071 37 100.0 37 CAGCGCAAGC ..................................... TTAGTTATCTTTTTCAACTCGCCAAAAAGATAGGTGT 3043145 37 97.3 38 AGATAGGTGT ....................A................ CAAAATCCCGGAAATTGCTTCCGGAAATTTGTTGCGAC 3043220 37 100.0 36 TTGTTGCGAC ..................................... ATTAAGCCTGGACTTTGCGTATCGCATTTTCGATGG 3043293 37 100.0 34 TTTTCGATGG ..................................... TCATTGCCAAGTGGTCCCCTTCGATGCTGATTGC 3043364 37 97.3 TGCTGATTGC ......................C.............. CCACGTTGTGGCTTTTTTGCCAATCTTCCAGGCCGAA ========== ====== ====== ====== ========== ===================================== 9 37 36 ATTTCAATCAACGCCCCGAGGAAGAGGGGATTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.05%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.10,-7.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [155,171] Score: 0/0.18 # # Final direction: R [0.78,4.5 Confidence: HIGH] >NC_009972 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3120449 37 97.3 39 GCGTTCATTT .................T................... ATGCTCGTTCTGCTCGCCGCCTGTGGCACGCCAGAGATG 3120525 37 100.0 34 GCCAGAGATG ..................................... TAATATTGTTGTCATTGGGACTGAATCACCGTTT 3120596 37 97.3 38 ATCACCGTTT ............T........................ TTCTGGTAGCTCTGCCTTCATCGCCGCGATTTCTTCAG 3120671 37 100.0 ATTTCTTCAG ..................................... ACCTGGGTGT ========== ====== ====== ====== ========== ===================================== 4 37 37 GTTTTAATCCCCGCTTCCTCGGGGCGTTGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:51.35%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.80,-9.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [56.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [125,155] Score: 0/0.18 # # Final direction: F [4.77,0.78 Confidence: HIGH] >NC_009973 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 134011 37 100.0 37 ACACAGAGGA ..................................... GCGCACTCCCAAACGAAGTCCCAACAAGGATCACCAG 134085 37 100.0 36 GGATCACCAG ..................................... TGTTGTTTCAATCTAAACCAACAAACCAAAACCATT 134158 37 100.0 38 CAAAACCATT ..................................... GTAACGCCGTCATCTCTGCGGCATTGGTAACGAACAAC 134233 37 100.0 37 AACGAACAAC ..................................... CTGAAATCTCCTGCCATTGGCTGTTTTGAACTTACTT 134307 37 100.0 36 GAACTTACTT ..................................... CTGAAACCCTAACGGCGCTTCATCGGGTTATTCCAG 134380 37 100.0 36 GTTATTCCAG ..................................... TTTATGTATTCTTCAGGCCCATTGCTCGCCAATGTG 134453 37 100.0 39 CGCCAATGTG ..................................... ACCTGGTGGTTGAAAAGATAAAAGTCTAGTATGAGGCTT 134529 37 100.0 39 TATGAGGCTT ..................................... ACCTGGTGGTTGAAAAGATAAAAGTCTAGTATGAGGCTT 134605 37 100.0 37 TATGAGGCTT ..................................... GCGCACTCCCAAACGAAGTCCCAACAAGGATCACCAG 134679 37 100.0 36 GGATCACCAG ..................................... TGTTGTTTCAATCTAAACCAACAAACCAAAACCATT 134752 37 100.0 38 CAAAACCATT ..................................... GTAACGCCGTCATCTCTGCGGCATTGGTAACGAACAAC 134827 37 100.0 39 AACGAACAAC ..................................... CTGGAATGGAAATTCTGAGCGCATCCGCAATACTTGCAA 134903 37 100.0 39 ATACTTGCAA ..................................... ACCTGGTGGTTGAAAAGATAAAAGTCTAGTATGAGGCTT 134979 37 100.0 36 TATGAGGCTT ..................................... CATCGCACGACCAACTCTTCCCCCACGACGGAGGGG 135052 37 100.0 40 GACGGAGGGG ..................................... TTCACAACCGTGAAGATCAGTTTGACATATTCAGGCGTTT 135129 37 100.0 37 TCAGGCGTTT ..................................... CCGCAGCCGGTCATGTCCATCGTCACTTTGACGGTTT 135203 37 100.0 37 TTGACGGTTT ..................................... CCGCCCCATAGTAACCACCCATACTTACTTTGGTCCG 135277 37 100.0 34 CTTTGGTCCG ..................................... TTGCCTGGCCCGAATTGAACTCAGCATATCGTTT 135348 37 100.0 36 CATATCGTTT ..................................... GTCATACTGCAGAAGTTGCGCAAGCGTGCTCGGAAG 135421 37 100.0 36 TGCTCGGAAG ..................................... TCATGGATCCAATTTCCTGGTTTACATTCCTCTTCG 135494 37 100.0 TTCCTCTTCG ..................................... ATTTGTCGGACTGTTTTGCGCTGAGCGATAGCGCGCT ========== ====== ====== ====== ========== ===================================== 21 37 37 GTAAGAATCATCGCCCCGACGAAGAGGGGTTTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:51.35%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-9.40,-7.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [38.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [156,376] Score: 0.18/0.18 # # Final direction: R [0.37,0.45 Confidence: LOW] >NC_009972 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3176515 37 100.0 39 AGTAGGGTAT ..................................... GTTTCATATTTCAAACAGATTAAATGCCCATTCAATTCA 3176591 37 100.0 38 ATTCAATTCA ..................................... GAGTAAATATGACAAGGATGCTGAAGATGCCTAGATTC 3176666 37 100.0 GCCTAGATTC ..................................... TGAGGCTTTATGGCTCCATCCCATCCCATCCTTCGGGC ========== ====== ====== ====== ========== ===================================== 3 37 38 ATTCAAATAACCAAAATCCTCGGAAGGGGATTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.30,-3.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [203,375] Score: 0/0.18 # # Final direction: F [0.37,0 Confidence: MEDIUM] >NC_009973 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 324171 37 100.0 37 TCCGGATTGA ..................................... CAAGTGGGTTAAAACATTTCTTGGAGCTATAATATTC 324245 37 100.0 36 TATAATATTC ..................................... TCACTGGCAAGCTCGATGGCAAGTACCTGACGGTTT 324318 37 100.0 CTGACGGTTT ..................................... TCCACTGTGT ========== ====== ====== ====== ========== ===================================== 3 37 36 GTTTCAAAACCCTCGTCGTCGGGCCACCCTATCAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [9,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.00,-6.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [308,225] Score: 0/0.18 # # Final direction: NA [0.37,0.37 Confidence: NA] >NC_009975 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 214844 28 100.0 38 NNNNNNNNNN .C..C.CG..G..G.C..........T. AGATTCTGTGACTAGTATTGGAAAAGGTGCTTTTTCAA 214910 28 100.0 38 NNNNNNNNNN ............................ TAACTCAATAACTAGTATTGGAAGAGGAACCTTCTCAA 214976 28 100.0 38 NNNNNNNNNN ............................ AGATTCTGTGAAAATTATTGAAGATGGGGCTTTTTCGC 215042 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 4 28 38 ATAATCAATTAAAAAGTGTGGTTATTCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [812,293] Score: 0.18/0.18 # # Final direction: R [0.18,0.41 Confidence: MEDIUM] >NC_010102 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3050804 29 100.0 32 NNNNNNNNNN AC.GC........................ TAACTCATCACATCCGCGTCAGACCTCGTGAC 3050865 29 100.0 32 NNNNNNNNNN ............................. GACAACGCATCAAGACCGATATACACCACGCC 3050926 29 100.0 32 NNNNNNNNNN ............................. AGCAAACTCAGTGGCAGCGGCGGTGCAGTTTT 3050987 29 100.0 32 NNNNNNNNNN ............................. ACAGTGAAGAATAAGCGGCTGCGCCGAAACGG 3051048 29 100.0 32 NNNNNNNNNN .......................A..... AGGGGAAAATTAACAATGGCGAATCTGAATCG 3051109 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 6 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [61.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [99,121] Score: 0/0.18 # # Final direction: R [0,1.92 Confidence: HIGH] >NC_010003 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2082391 30 100.0 37 NNNNNNNNNN .............................. GATGGAAAAGAAAGAAAGACATCAAGAACGTTTGACC 2082458 30 100.0 36 NNNNNNNNNN .............................. CTCATCCACATAGTAGATTATTTGTTATGGATTATG 2082524 30 100.0 38 NNNNNNNNNN .............................. TTTTTTTCATGATAAAATCATCTCCTTTTTTAGTAAAA 2082592 30 100.0 37 NNNNNNNNNN .............................. GAAATAGTTACTATGGTGGACGTACTGAATTGATTGA 2082659 30 100.0 35 NNNNNNNNNN .............................. CTTCATATTTGTCTCCGAATGAATCAAAAAACACT 2082724 30 100.0 37 NNNNNNNNNN .............................. AGGGCGAAAAGGAAATCATGAAACGTATTGGTGAATT 2082791 30 100.0 38 NNNNNNNNNN .............................. AAGCAAGAAAAGGCGATAAAACTTCTAAAATATTCTAT 2082859 30 100.0 38 NNNNNNNNNN .............................. AACAATGAGGATATAGAATATTGTAGGCGTGATGTTGA 2082927 30 100.0 35 NNNNNNNNNN .............................. GATAATTGTATCCCTTCGGTACGATAAAAGAATAA 2082992 30 100.0 39 NNNNNNNNNN .............................. AATGAAGATGATAAAAGGATTTGGCATGGTGATAAAAGC 2083061 30 100.0 35 NNNNNNNNNN .............................. TTTTTTATAGAAAGTACACTGTACTTTCTAAGTCG 2083126 30 100.0 36 NNNNNNNNNN .............................. TCTAACAATTAACAACGAGCCAGCTCGAATGAAAAT 2083192 30 100.0 37 NNNNNNNNNN .............................. TGTGCATTCTTGACACCTTGGAAGTTTTCAGTTATTT 2083259 30 100.0 38 NNNNNNNNNN .............................. TTCAATTGGATACTTTCAAATATCTACGTGGAGGGGTG 2083327 30 100.0 37 NNNNNNNNNN .............................. CCCGTGCCGCTGACGTTGTATAACTTGAAAAAAGAAT 2083394 30 100.0 38 NNNNNNNNNN .............................. TGGGTTAAGAATGAGAGCACTTTAGAAGAGAGACCTGT 2083462 30 100.0 36 NNNNNNNNNN .............................. TTGTCTCAATAGGTTCTTTTGGTTGAGTCTGTCCTG 2083528 30 100.0 40 NNNNNNNNNN .............................. CTTCCTGAAAAACCGTGTCGGTTTTTCCGTGTCGGTTTTT 2083598 30 100.0 36 NNNNNNNNNN .............................. TTGAGGAACCTAAAAAAGAGGAGGCAAATAATAAAA 2083664 30 100.0 40 NNNNNNNNNN .............................. ATAATATAACTTCCATCACCATTTTCAATTATCTTTGCCA 2083734 30 100.0 36 NNNNNNNNNN .............................. ACCCGTCTCGCACGTCCGGCACTGTGATGCTGTATC 2083800 30 100.0 35 NNNNNNNNNN .............................. ACTTGTATACAGAAACAGAAGCAGACATAAAAACA 2083865 30 100.0 37 NNNNNNNNNN .............................. CGACACCAATTAGATCCATAACAGTTACCTCCTTAAG 2083932 30 100.0 39 NNNNNNNNNN .............................. CAAGGCGTTTGTTTCGGCTCCGTGTTTGCGGCTCCGTGC 2084001 30 100.0 39 NNNNNNNNNN .............................. ACCATGAATGAAACGCTTCTTTTGTCTTTCTTTGCTTCT 2084070 30 100.0 35 NNNNNNNNNN .............................. TCTAACTTCCTTCTTTCAACTTCTTTTTGTAACTT 2084135 30 100.0 37 NNNNNNNNNN .............................. CAAATACAGTATTCCCACAAGTAATAAGTAATAACAA 2084202 30 100.0 38 NNNNNNNNNN .............................. TCAATAATTTCACAATAATAATTTCTCAACAAATCATC 2084270 30 100.0 36 NNNNNNNNNN .............................. GTAGCTAAATTAGCAATTATAACTCCTTTTTCTTTT 2084336 30 100.0 36 NNNNNNNNNN .............................. ACTTTATTCAACATATCAACATTATTTTCTTTCTCA 2084402 30 100.0 37 NNNNNNNNNN .............................. CTCGATTTCTTCTATGTACATTTTTTCCGACAACTCG 2084469 30 100.0 36 NNNNNNNNNN .............................. TTTAGATTTTTGTGTTGATATTTGTGTAGATATTTA 2084535 30 100.0 38 NNNNNNNNNN .............................. TTATATCATCCTGTCTTCCTTCGTCTGTGATTTTCTCC 2084603 30 100.0 38 NNNNNNNNNN .............................. TTCTTATTTCTTTAACTATTTCTGGTTCTAATTGTTCA 2084671 30 100.0 41 NNNNNNNNNN .............................. CAAGAAATATCTCTTAGTTTTTTTTTTGAACCATATAGTAG 2084742 30 100.0 37 NNNNNNNNNN .............................. AAGTAAAAAAAAGAGATGATTTCTCACCTCTTTTTTC 2084809 30 100.0 37 NNNNNNNNNN .............................. GGTTCATTTAAACTAACAATCTTTGTATCTTCTTTTT 2084876 30 100.0 36 NNNNNNNNNN .............................. ATATGAAAAGTAAAGTGAATACTGCTAAAACGCCCC 2084942 30 100.0 35 NNNNNNNNNN .............................. TCTAAATCTGTGAATACTTTTACTTTTCCTTGAAG 2085007 30 100.0 37 NNNNNNNNNN .................A............ AGCCCCTGAGCTGAAGCTAACATACCCTCGGTGTACC 2085074 30 100.0 36 NNNNNNNNNN .................A............ TTTCCTTCACATATTGGTCTACTTCACCATGTATCC 2085140 30 100.0 36 NNNNNNNNNN .................A............ GCACTCTCCTCTAAAGCTCCTCTTTGAGCAGCTAAT 2085206 30 100.0 36 NNNNNNNNNN .................A............ GTATATACAGCATAACGCATTGCATCCATTGCATGG 2085272 30 100.0 1 NNNNNNNNNN ...........................GGG NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 44 30 37 CTTTTTATCCTACCTATGAGGAATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-2.80,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [78.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [263,1093] Score: 0.18/0.18 # # Final direction: F [1.55,0.18 Confidence: HIGH] >NC_010120 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 400740 36 94.4 30 GCAACGGCTG ........G...A....................... GCGGAACGGGTTGACAGACTGAATTTGAGT 400806 36 97.2 30 GAATTTGAGT ............A....................... CGACAACAAAGCCGTCTATGACCTGACCGA 400872 36 100.0 30 ACCTGACCGA .................................... TTGGGAGGTGGAAAACCGAATCCTGCACGA 400938 36 100.0 30 TCCTGCACGA .................................... ATGCGCGTAAACACTTTACGCAAGGCGTTG 401004 36 100.0 30 CAAGGCGTTG .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 401070 36 100.0 30 CGCTTTCTTT .................................... GCCACGCACCTACACGGGGTGGTTTGTTAA 401136 36 100.0 30 GGTTTGTTAA .................................... TCGCACACGCAATGGAGCTTATCGTTTACT 401202 36 97.2 30 ATCGTTTACT ..................C................. TTCATTCCGATTGCCTTGCGTTCAAGGTGT 401268 36 97.2 30 TTCAAGGTGT ..................C................. TGCAATCTGATTTTCCGCCGTCTATACATC 401334 36 97.2 TCTATACATC ..................C................. ACTTCGACGGG ========== ====== ====== ====== ========== ==================================== 10 36 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-0.50,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [474,65] Score: 0.18/0.18 # # Final direction: R [0.68,1.05 Confidence: LOW] >NC_009997 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3981875 28 100.0 32 NNNNNNNNNN .C...G...T.................. GAAGCGTTCGATCCGTTTGAAGATTTTAACGA 3981935 28 100.0 32 NNNNNNNNNN ............................ AAACTAGCATTCCTATAATTAACTTCTTGCGC 3981995 28 100.0 32 NNNNNNNNNN ............................ CATTAAAATCAAATTCAAGGAGGTGGACTAAA 3982055 28 100.0 32 NNNNNNNNNN ............................ AGCTTAAGGCTTCACCTGCAAAAATCTCTCAG 3982115 28 100.0 32 NNNNNNNNNN ............................ GGCAGAGGCTGAGTTATGCGCCATTTGATAAC 3982175 28 100.0 32 NNNNNNNNNN ............................ GCCAACACCATCAACACCATCCTGACCATCTA 3982235 28 100.0 32 NNNNNNNNNN ............................ TTTTGGAATATCTTTCAATGCATGGCCATTAC 3982295 28 100.0 32 NNNNNNNNNN ............................ CTCCCCCCGCGTCTAACACCCGCACCCCGTCT 3982355 28 100.0 32 NNNNNNNNNN ............................ CAAGGCGTCACCCAAAACACTGCGGCTATTCA 3982415 28 100.0 32 NNNNNNNNNN ............................ TTTAGCGTCTATCTACCGTGGCATGACCTATT 3982475 28 100.0 32 NNNNNNNNNN ............................ GATCCAACGCCAAACCATTGGCCGCGCCAATG 3982535 28 100.0 32 NNNNNNNNNN ............................ ATGGTAGGTGCGAGGCACTCGAAAGCGCCGCC 3982595 28 100.0 32 NNNNNNNNNN ............................ TTGCGCCGAACTTCAAACTGTTTTTGCCAGCT 3982655 28 100.0 32 NNNNNNNNNN ............................ AAAGACTGGTTTATTGGCGACGGTTTTAAAGT 3982715 28 100.0 32 NNNNNNNNNN ............................ TTTTCTCGCCATTGTCGTTGTCCTGTTTTTTA 3982775 28 100.0 32 NNNNNNNNNN ............................ TTATACCCTATATCCTGCTCCACTATATACAA 3982835 28 100.0 32 NNNNNNNNNN ............................ CGATTTGGGCGGTGCATTATGTGCCAAACGTA 3982895 28 100.0 32 NNNNNNNNNN ............................ GGCCATGGTGCGTGGCCATGGTGTGTGGCCAT 3982955 28 100.0 32 NNNNNNNNNN ............................ TTACAGACCAACGCCTGATACCTTGTCCGTTA 3983015 28 100.0 32 NNNNNNNNNN ............................ GCTATCATGACAAAATAACGCATAATTATGCG 3983075 28 100.0 32 NNNNNNNNNN ............................ CCATTGAGGCGGAAGTAACGACCGCCATGATC 3983135 28 100.0 32 NNNNNNNNNN ............................ GAACCAGCTTATCGCGTTTTTCGTCCGTCAGC 3983195 28 100.0 32 NNNNNNNNNN ............................ ACAGCGACCCCACGTATTTTCTCGCACTAAAT 3983255 28 100.0 32 NNNNNNNNNN ............................ TTCGCCCTTATTTATCTGCTCTGTGACGTACT 3983315 28 100.0 32 NNNNNNNNNN ............................ ACTCCTCCAAATAATCCACATATTACCACACT 3983375 28 100.0 32 NNNNNNNNNN ............................ GCGCAATACAAGGGTGATTGTGCGTTATCAAG 3983435 28 100.0 32 NNNNNNNNNN ............................ TAAACGGTTATACATTTTATACCAGCAGTTTT 3983495 28 100.0 32 NNNNNNNNNN ............................ CAAGCCATACAGTCAGGAAGTGATATTGACGA 3983555 28 100.0 32 NNNNNNNNNN ............................ AATTCACCGGCCATTTCTTATAATTCAGCTCA 3983615 28 100.0 32 NNNNNNNNNN ............................ GAGGGTCGCAAGGCTTGACTCCATGCGGGATA 3983675 28 100.0 32 NNNNNNNNNN ............................ GTAAATCGTTTTTGTCGGTTCGTGGTAATACT 3983735 28 100.0 32 NNNNNNNNNN ............................ AGGTTAGAAATAAATGAAACTCTTTTATCACC 3983795 28 100.0 32 NNNNNNNNNN ............................ TAATGTCGATGAAATATCAGCGGCTATCAAGT 3983855 28 100.0 32 NNNNNNNNNN ............................ CTGTTGACTTGTTGGTCACTTTTTTTATTACT 3983915 28 100.0 32 NNNNNNNNNN ............................ GGAATACAGTTAAGGGGTATATCAACAACAAC 3983975 28 100.0 32 NNNNNNNNNN ............................ CAGTTGGGACTTTCTCAGCGGACTCTGCAAAC 3984035 28 100.0 32 NNNNNNNNNN ............................ CACCTTAGAAAATTCATGGGGCTTCATCTTGT 3984095 28 100.0 32 NNNNNNNNNN ............................ ATGGTGCAGTAGACGTAACAACAATACTTAGA 3984155 28 100.0 32 NNNNNNNNNN ............................ AAGAGTTTCTAGAGTTAAAGGTTAATGAAAAA 3984215 28 100.0 32 NNNNNNNNNN ............................ ATTTATTTCTAACCTATCACTGCTTGGATATT 3984275 28 100.0 32 NNNNNNNNNN ............................ GCAATACTCCCAGACTGGGGCATGGGTTAACT 3984335 28 100.0 32 NNNNNNNNNN ............................ GATTTCATTTGAAACTGCTTATAATGTTGAGT 3984395 28 100.0 32 NNNNNNNNNN ............................ CGTGTTTGGGTGCGTGACTCTCCTGCTTTGAT 3984455 28 100.0 32 NNNNNNNNNN ............................ TTACAGACCAACGCCTGATACCTTGTCCGTTA 3984515 28 100.0 32 NNNNNNNNNN ............................ GTCATGCGCAGTTATTGGACAAGAACGTCGCA 3984575 28 100.0 32 NNNNNNNNNN ............................ AGTGAGACTAGCCGCCAGTTCACTATCAGTAA 3984635 28 100.0 32 NNNNNNNNNN ............................ TTCACCCTTATTTATCTGCTCTGTGACGTACT 3984695 28 100.0 32 NNNNNNNNNN ............................ AGTTCTTCACGGTCTACCCCAGCCATATCGTT 3984755 28 100.0 32 NNNNNNNNNN ............................ GAAACTGTGACTGAAGAGTTTCTAGAGTTAAA 3984815 28 100.0 32 NNNNNNNNNN ............................ AATATTGGTTCGGCCATGACTGTTGACTTGTT 3984875 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 51 28 32 TTTCTAAGCCGCCTGTGCGGCGGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-9.50,-10.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [195,132] Score: 0/0.18 # # Final direction: R [0,1.42 Confidence: HIGH] >NC_010002 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1355470 28 100.0 32 NNNNNNNNNN ............................ TGGAAGAACGCAGGCCATTCGGGGTTGGTCTT 1355530 28 100.0 32 NNNNNNNNNN ............................ CAGCAGCCAGCGTGTCCGGGCTTGGCGCTGTT 1355590 28 100.0 32 NNNNNNNNNN ............................ ATGAGGCCGTGGAACTGGTGGGCTATGGCGAA 1355650 28 100.0 32 NNNNNNNNNN ............................ AACACGCCGAGGCACTCATTGCGTGCGGCCCA 1355710 28 100.0 32 NNNNNNNNNN ............................ TATGTCTGCGGCAGACCACGTGCGGCGCCCGG 1355770 28 100.0 32 NNNNNNNNNN ............................ AAATCCAAGAGCACGCCAAGACCGCCGCCGCC 1355830 28 100.0 32 NNNNNNNNNN ............................ ATACCCAGCAGCGAGCTGACGCCGTACTGCAC 1355890 28 100.0 32 NNNNNNNNNN ............................ ATCGCCGATCCCCTTCACGCCCTTGGCGGCTT 1355950 28 100.0 32 NNNNNNNNNN ............................ TCAGGGTCGGGGGTGAAATAGGCGACGGTGGC 1356010 28 100.0 32 NNNNNNNNNN ............................ ACATAGTCGAAGATCCGCGCCACGCCGCTGGA 1356070 28 100.0 32 NNNNNNNNNN ............................ TGGCCCGTGATTCCAACCCCGAGCCTGCCGGC 1356130 28 100.0 32 NNNNNNNNNN ............................ GGCCCCGACGTGGTGGCAGGGCGCTGGTACAG 1356190 28 100.0 32 NNNNNNNNNN ............................ TTCCAGAAGCAGGCCGAACTGCGCTGCAACAA 1356250 28 100.0 32 NNNNNNNNNN ............................ TTGACCTGCTGATATTCGCCGGGCGGACCACA 1356310 28 100.0 32 NNNNNNNNNN ............................ TTGTAGTTACCGGAGCCGACCCACGCCACCTC 1356370 28 100.0 32 NNNNNNNNNN ............................ TGACGATGTGATCGAGGGCGTGCCCGAGACCA 1356430 28 100.0 32 NNNNNNNNNN ............................ TTCATGCGCTCGGCAGGGATTGTCCAAATCGC 1356490 28 100.0 32 NNNNNNNNNN ............................ AGACCTGGGGAGCGTCAAAGCCAGATTACGAC 1356550 28 100.0 32 NNNNNNNNNN ............................ ATGCCCCAGCCGCAGACCGTGGCCGTGCTGTT 1356610 28 100.0 32 NNNNNNNNNN ............................ AGCACAACAACCTCATCACGCCCGAAGTAAAG 1356670 28 100.0 32 NNNNNNNNNN ............................ TTTGGGTGTCTGGGCGGGGTATGAGACGGGCG 1356730 28 100.0 32 NNNNNNNNNN ............................ TTCAAAGGCTGGGCCGACACCCTGACCGGCTT 1356790 28 100.0 32 NNNNNNNNNN ............................ GTCGCGCGGGTCAGAGCCTGGGCCATCGCGCT 1356850 28 100.0 32 NNNNNNNNNN ............................ AAGTCCAAAAGCCGGGCGTGCTGATGCGCTGG 1356910 28 100.0 32 NNNNNNNNNN ............................ TATCAAACCGTCGAGCTGGGCGATACCGATAG 1356970 28 100.0 32 NNNNNNNNNN ............................ AGCTTGCGGCACAGAGCAATGCTCCACTTCTC 1357030 28 100.0 32 NNNNNNNNNN ............................ GAGCAGTCACTGCAGACGCTGCAGGATCTGGT 1357090 28 100.0 32 NNNNNNNNNN ............................ TGTAGCGCGCGCGGACTTCCGCTGGCCCGCAC 1357150 28 100.0 32 NNNNNNNNNN ............................ CACTGCAGGAATTGCGGTGCAGAGATTTCGGA 1357210 28 100.0 32 NNNNNNNNNN ............................ TCTCTCACTCGTTGTTTTGGTTTTCATGCAGC 1357270 28 100.0 32 NNNNNNNNNN ............................ ACGCCCGAGCCGCTGGGCTTGAAGATGGTGGA 1357330 28 100.0 32 NNNNNNNNNN ............................ AATTCCTGGGAGGCCGCTGACAAGGCCTACCA 1357390 28 100.0 32 NNNNNNNNNN ............................ TTGCCGTACTCGACCACCGCCACCATGGCCAG 1357450 28 100.0 32 NNNNNNNNNN ............................ AACAAGAACTGCCCGGAGGGCAACAGAACCAT 1357510 28 100.0 32 NNNNNNNNNN ............................ GCCGTCATGGCCCACATCGCCAACCGCTATTC 1357570 28 100.0 32 NNNNNNNNNN ............................ GACTGCTACCCCTGGACGCGCTGATGGCCGGG 1357630 28 100.0 32 NNNNNNNNNN ............................ TGAAAGCCCGCCTCGAATAGCTGGCTCGTGCC 1357690 28 100.0 33 NNNNNNNNNN ......A..................... ATGCAACACGCCACCACCGCCATGCGTACCTAT 1357751 28 100.0 32 NNNNNNNNNN ............................ AAGGCCACCGGGAGCACGCCATGAACGCCCGC 1357811 28 100.0 32 NNNNNNNNNN ............................ TGACCCTGCTGATGGCGCCCCACTCCCTGAAC 1357871 28 100.0 32 NNNNNNNNNN ............................ TTTCGTGATGGGCCCTGGGCTTGCCAGGGCGG 1357931 28 100.0 32 NNNNNNNNNN ............................ ACGCAGGCACGCGCGCCCAGTCCTCGACCTTG 1357991 28 100.0 32 NNNNNNNNNN ............................ AGTGCTGCGTGAAGGGATCGTGGGAGCGACTT 1358051 28 100.0 32 NNNNNNNNNN ............................ CGAACGTTCGTCTGCGGATGTTGGTGCGCCTC 1358111 28 100.0 32 NNNNNNNNNN ............................ GCGAGTACGCCGCCCAGGCCTTGGGCCAGCCC 1358171 28 100.0 33 NNNNNNNNNN ............................ TGGACCAGATCAGCGAACCGCCGGCCCCCTGAC 1358232 28 100.0 32 NNNNNNNNNN ...........................G CGCCACCCTGTACAGAGTGCGCGGAGCATACC 1358292 28 100.0 32 NNNNNNNNNN ............................ TTCATGGCCCGGATGGCGTCAGCAGCGGCATC 1358352 28 100.0 32 NNNNNNNNNN ............................ ATCAAGGCCGTCATCGCCCTGGCCCATAGAGC 1358412 28 100.0 32 NNNNNNNNNN ............A............... TGCGAACGTTCCCCTCTGGAAGGAAGCCCCAT 1358472 28 100.0 32 NNNNNNNNNN ............A............... ATGCAGTGGCCAGGGCGACAGTGCGCCCGGCC 1358532 28 100.0 32 NNNNNNNNNN ............A............... GCCTGGCCGGTGCCGTGCGCGCTGGTCACGGC 1358592 28 100.0 32 NNNNNNNNNN ............A............... TGATCCGCGACGTGATGGACGTCACCCTGTTC 1358652 28 100.0 32 NNNNNNNNNN ............A............... AATGCCCGATCCCAACAACAGCGACGCTGAAA 1358712 28 100.0 32 NNNNNNNNNN ............A............... ATGCCCCCGCCTTCGATCTCGATGCCCATCTG 1358772 28 100.0 32 NNNNNNNNNN ............A............... ACGCCGATGCTGCCCACGCTGACGACAGGGCC 1358832 28 100.0 32 NNNNNNNNNN ............A............... TGATTCAGGGTTGCGCTGCTCATGCAGCTGTC 1358892 28 100.0 32 NNNNNNNNNN ............A............... TGATCCCATCCAGGGGCAGAGCGCTACTAGCC 1358952 28 100.0 1 NNNNNNNNNN ............A..............T NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 59 28 32 GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [131,196] Score: 0/0.18 # # Final direction: F [1.15,0 Confidence: HIGH] >NC_010067 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 908104 29 100.0 31 NNNNNNNNNN ............................. GCAGCTGGTTATCAAACACCACCAGCTCCTC 908164 29 100.0 31 NNNNNNNNNN ....................AG....... TCAGTCGGTTATTAGTGGCCCATAGCGACTG 908224 29 100.0 31 NNNNNNNNNN ..................T.A....TG.. TCAGTAGGTTATGAGATACCGACAGTTTCTG 908284 29 100.0 31 NNNNNNNNNN .....T.A..........T.......... CCAGCTGGTTATCATCTACCGACAGCTCCTC 908344 29 100.0 31 NNNNNNNNNN .................T........... CCATCTGGTTATGAGAGGCCGACAGCGACTG 908404 29 100.0 31 NNNNNNNNNN ........A.................... GCAGCAGGTTACCATCTACCGACAGCTCCCG 908464 29 100.0 31 NNNNNNNNNN ............................. CCAGTTGGTTATTAAAGGCCCACAGCTTACA 908524 29 100.0 31 NNNNNNNNNN ........A...T...T............ TCAGCGGGCTCTCAACAACAATCAGCTCCCT 908584 29 100.0 31 NNNNNNNNNN ........A.................... GCAGCTGGTTACCAGCGAAAATCAGCTCCTG 908644 29 100.0 1 NNNNNNNNNN ........C.....A..T..A....TG.. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 10 29 31 TAGTCCTGGCGGCAGCGCCGGCAGGCTGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-11.00,-8.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [6-11] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [36.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [1449,1959] Score: 0/0.18 # # Final direction: F [0.78,0.64 Confidence: LOW] >NC_010079 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 2389073 23 100.0 33 NNNNNNNNNN ....................... CATTATTGTATGCTGACTTTTCGTCACCTTCTG 2389129 23 100.0 36 NNNNNNNNNN .............TTCC.CAA.T TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA 2389188 23 100.0 33 NNNNNNNNNN ....................... CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG 2389244 23 100.0 1 NNNNNNNNNN .....................T. NNNNNNNNNN ========== ====== ====== ====== ========== ======================= 4 23 34 TGTTGGGGCCCCGCCAACTTGCA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.90,-2.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [61,143] Score: 0.18/0.18 # # Final direction: R [0.37,0.96 Confidence: MEDIUM] >NC_010079 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 954497 30 100.0 26 NNNNNNNNNN .............................. CGGGGCCCCAACACAGAGGCTGGCGG 954553 30 100.0 28 NNNNNNNNNN .............................. GGTGGAGCCCCGACACAGAGAAATTAGC 954611 30 100.0 26 NNNNNNNNNN TCCTCA.TT.CTAC.G.CAA.......... CGGGGCCCCAACACAGAAGCTGGCGA 954667 30 100.0 53 NNNNNNNNNN .............................. GGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAA 954750 30 100.0 1 NNNNNNNNNN ....A....AGTAGGATAAT.T...T.... NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 5 30 33 AAAGTCAGCTTACAATAGTGTGCAAGTTGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.50,-1.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [152,71] Score: 0.18/0.18 # # Final direction: F [0.96,0.27 Confidence: MEDIUM] >NC_010080 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1587513 32 100.0 34 NNNNNNNNNN TACA.CCA.A.GTGCA................ ACGACTTCACTGGCAAGAGCGCAATGGACCTAAA 1587579 32 100.0 35 NNNNNNNNNN ................................ CCGAAAACTTCAAACACAGTACCGTCAATATCCTT 1587646 32 100.0 34 NNNNNNNNNN ................................ TCTAGGGTCAATACCGTTCACTACTTCCCAATTA 1587712 32 100.0 35 NNNNNNNNNN ................................ TGCAAAGCCATTTAAGCGTCCATAGGCTGTATATT 1587779 32 100.0 36 NNNNNNNNNN ................................ CACATAGATTGGGTGACCATCACCATATATTACATA 1587847 32 100.0 35 NNNNNNNNNN ................................ TGTCATCTTTAGCTAAAGTACCTTTAATCTTGTAA 1587914 32 100.0 36 NNNNNNNNNN ................................ ATTGTTTTGAATAATATTGACACTAGTCCTGATAAA 1587982 32 100.0 35 NNNNNNNNNN ................................ TCTTAGATTGGTCGTGCCGTTAGCGTAGCCATTAA 1588049 32 100.0 35 NNNNNNNNNN ................................ AGCAAGCGCTGGTAGTGCTTGATTTGGTCATAGTA 1588116 32 100.0 34 NNNNNNNNNN ................................ ATCTTTTTTCTGCTGTATCCTGCGAATCTCTGCA 1588182 32 100.0 35 NNNNNNNNNN ................................ GTAGCCGAATGGTTGATTTGTCGTCACCTAGTTTT 1588249 32 100.0 35 NNNNNNNNNN ................................ TTTTTTGAATCGAACAAGGAACAAGGATAACAAAA 1588316 32 100.0 35 NNNNNNNNNN ................................ TTGCTATATGTAGCTGTAAACACCATCGTGATCTT 1588383 32 100.0 37 NNNNNNNNNN ................................ TGCCCTTGTGTACAATATTAACAGCAGACATAAATAA 1588452 32 100.0 34 NNNNNNNNNN ................................ TTTAAGGCTGTTTTGATTCGCGCCCCGATCAACT 1588518 32 100.0 34 NNNNNNNNNN ................................ AATATGATAGTATAAAAATGTAAGCTAGTTAAAA 1588584 32 100.0 35 NNNNNNNNNN ................................ GCTTATAAGGCTATTGCTTAGTTCTTGCTATGCGA 1588651 32 100.0 35 NNNNNNNNNN ................................ CAGTGTACGAATTAAGTACGTACTCTGTATGGAGT 1588718 32 100.0 37 NNNNNNNNNN ................................ GTTCACCCGTTTGCATGTTTTGGTATATAGTACAAGT 1588787 32 100.0 36 NNNNNNNNNN ................................ GTCAATTGTTAAAGCGACTGTTGCAGTCTTGTCAAT 1588855 32 100.0 35 NNNNNNNNNN ................................ GGATACGCCCTGCGATACTGCTACAATCACGATCA 1588922 32 100.0 35 NNNNNNNNNN ................................ ATATAAGTACAGTTAGGTTATATCAAGTTATAAAT 1588989 32 100.0 1 NNNNNNNNNN ................................ NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 23 32 35 ATTTCAATCCACGCACTCACAAGGAGTGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [10,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.50,-3.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [600,463] Score: 0/0.18 # # Final direction: R [0.37,5.55 Confidence: HIGH] >NC_010085 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 405794 29 100.0 25 NNNNNNNNNN .T.CT...CTT...ACA............ TCATCAGCTGACATCTCATCCAACT 405848 29 100.0 31 NNNNNNNNNN .T.CT..TGT.....C...C......... TCAACTGTCATGAGAATACTCAACGCAACAT 405908 29 100.0 25 NNNNNNNNNN ............................. TCATCAGCTGACATCTCATCCAACT 405962 29 100.0 31 NNNNNNNNNN .T.CT..TGT.....C...C......... TCAACTGTCATGAGAATACTCAACGCAACAT 406022 29 100.0 25 NNNNNNNNNN ............................. TCATCAGCTGACATCTCATCCAACT 406076 29 100.0 31 NNNNNNNNNN .T.CT..TGT.....C...C......... TCAACTGTCATGAGAATACTCAACGCAACAT 406136 29 100.0 25 NNNNNNNNNN ............................. TCATCAGCTGACATCTCATCCAACT 406190 29 100.0 31 NNNNNNNNNN .T.CT..TGT.....C...C......... TCAACTGTCATGAGAATACTCAACGCAACAT 406250 29 100.0 25 NNNNNNNNNN ............................. TCATCAGCTGACATCTCATCCAACT 406304 29 100.0 31 NNNNNNNNNN .T.CT..TGT.....C...C......... TCAACTGTCATGAGAATACTCAACGCAACAT 406364 29 100.0 25 NNNNNNNNNN ............................. TCATCAGCTGACATCTCATCCAACT 406418 29 100.0 31 NNNNNNNNNN .T.CT..TGT.....C...C......... TCAACTGTCATGAGAATACTCAACGCAACAT 406478 29 100.0 25 NNNNNNNNNN ............................. TCATCAGCTGACATCTCATCCAACT 406532 29 100.0 31 NNNNNNNNNN .T.CT..TGT.....C...C......... TCAACTGTCATGAGAATACTCAACGCAACAT 406592 29 100.0 25 NNNNNNNNNN ............................. TCATCAGCTGACATCTCTGGTTCAT 406646 29 100.0 31 NNNNNNNNNN .A.CA....TC..C.CA............ TCAACTGTCATGAGAATACTCAACGCAACAT 406706 29 100.0 25 NNNNNNNNNN ............................. TCATCAGCTGACATCTCATCCAACT 406760 29 100.0 31 NNNNNNNNNN .T.CT..TGT.....C...C......... TCAACTGTCATGAGAATACTCAACGCAACAT 406820 29 100.0 25 NNNNNNNNNN ............................. TCATCAGCTGACATCTCTGGTTCAT 406874 29 100.0 19 NNNNNNNNNN .A.CA....TC..C.CA............ GTATCACTATCTGGTTCAT 406922 29 100.0 31 NNNNNNNNNN .A.CA....TC..C.CA............ TCAACTGGAATGTTTGACATCTCATCCAACT 406982 29 100.0 19 NNNNNNNNNN .T.CT....TC..C.CA............ GTATCACTATCTGGTTCAT 407030 29 100.0 1 NNNNNNNNNN .A.CA....TC..C.CA............ NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 23 29 27 CCATCCCATCACTATTCAGTAACGCAACA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.17%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-5.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [41-32] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [3513,3700] Score: 0/0.18 # # Final direction: R [0,0.78 Confidence: HIGH] >NC_010125 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2181614 36 100.0 30 GACCGGGTAT .................................... TCGAAGACCGCGCTGGACGACATGGGGAAG 2181680 36 100.0 30 CATGGGGAAG .................................... CGATTCCGATACCTTGCGCGTGCGCACTGG 2181746 36 100.0 30 TGCGCACTGG .................................... GCAAGATAACGGCCTTCGGCCACACGAAGA 2181812 36 100.0 30 CACACGAAGA .................................... GCAGATTTCGATACCGGCAACGACGGTCTT 2181878 36 100.0 30 CGACGGTCTT .................................... GAGCGGAGGCAGCTTGTGGCCCAATATGGC 2181944 36 100.0 30 CCAATATGGC .................................... GATCGCGCATGATGGCCGGATCAACGCTCA 2182010 36 100.0 30 TCAACGCTCA .................................... ATCGAGCGCCGGCCGGACGTCGTTGTCGCC 2182076 36 100.0 30 CGTTGTCGCC .................................... CATGGTGTCGAGCTTGCTCGGCGCGTTCTC 2182142 36 100.0 GCGCGTTCTC .................................... TGCTCTTAGC ========== ====== ====== ====== ========== ==================================== 9 36 30 AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [11,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [45.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [190,134] Score: 0/0.18 # # Final direction: F [0.74,0.27 Confidence: MEDIUM] >NC_010125 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2253868 29 100.0 32 AACTCAAGAT ............................. GCCGCGACGGTGAAGGGGAGGTTGTTCGACGC 2253929 29 100.0 32 TGTTCGACGC ............................. GAGTCACCGGATTCCCATCTCATCCTAATATC 2253990 29 100.0 32 TCCTAATATC ............................. CTTTTCTCAGCCGACACTCTCCATGCAAGAAC 2254051 29 100.0 32 ATGCAAGAAC ............................. ACGCGGGTCTATGAGATTCCGATCATGCAGGA 2254112 29 100.0 32 TCATGCAGGA ............................. CATTGACCCGGCACCCTCCCCATGTGACGTTT 2254173 29 100.0 32 TGTGACGTTT ............................. TGGCTCGGGACCATCTTAGCGGACGACATGGC 2254234 29 100.0 32 ACGACATGGC ............................. GGCGTAGCCCGCAGCACCGCCCAGCCGGGGAC 2254295 29 100.0 32 AGCCGGGGAC ............................. CTTAACTGGATCACGATCGCGCTGATCCTCTA 2254356 29 100.0 32 TGATCCTCTA ............................. TTCTCGGCACTCGACCCGCGCCCAGACGGCTG 2254417 29 100.0 32 CAGACGGCTG ............................. CGCGGGTCGCTCGGCAATCGCGCTGCTATCGC 2254478 29 100.0 32 CTGCTATCGC ............................. GCCGGACGAGCGCGTACATGCTCTGGTGCATC 2254539 29 100.0 32 CTGGTGCATC ............................. CAGCGGCGATCCTGAGCGGTTCCACGAGGCGG 2254600 29 100.0 32 CACGAGGCGG ............................. ATCTGCCTCAGACCTTCGATGCGGAGCAGGCC 2254661 29 100.0 32 GGAGCAGGCC ............................. GACAATCGTTCCCTCCCTCAAAGATGATTATT 2254722 29 100.0 32 GATGATTATT ............................. ACGTTCTCGCGCGTGCTGTCCACGTTCCTGAC 2254783 29 100.0 32 CGTTCCTGAC ............................. AGCGCGGCGTGGCGGGAATCAAGGTCGTCGGT 2254844 29 100.0 32 GGTCGTCGGT ............................. ACCATCCGTTCGGCGGTGATGCCGCGAACGAT 2254905 29 100.0 32 CGCGAACGAT ............................. TTGCGTCAAACGAAGCACAATATCAGGCGCAG 2254966 29 100.0 32 TCAGGCGCAG ............................. TTGCCTCTAACGAGGCGCAGTATCAGGCACAG 2255027 29 100.0 32 TCAGGCACAG ............................. CCGTCGTTTCGATCGTCACGGCGATCATCGGC 2255088 29 100.0 GATCATCGGC ............................. TCTTCGTGGA ========== ====== ====== ====== ========== ============================= 21 29 32 CGGTTCATCCCCGCACGTGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [36.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [94,70] Score: 0/0.18 # # Final direction: F [0.37,0.27 Confidence: LOW] >NC_010125 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 62935 32 100.0 34 NNNNNNNNNN ....T.....C....T....GTG......... GACAACCTTGCGACTCCTGTCCGACGCGGTCGGC 63001 32 100.0 34 NNNNNNNNNN ......................G......... GGGTGCGATCCTCCGCATGGTGCAGGAGGACATC 63067 32 100.0 36 NNNNNNNNNN ................................ CGCCTCGTCGATGATGACGGGCGAATTCATCACGCC 63135 32 100.0 35 NNNNNNNNNN ................................ GATCACGCGCACGCACCGCAGCCACTCGTCGTAGG 63202 32 100.0 34 NNNNNNNNNN ................................ CAACTGTCCGATATCTCGGCCAATCTCTCCAACG 63268 32 100.0 35 NNNNNNNNNN ................................ CGTTTCTCGATACGCGGTCCAATCCCCTCCTTCTT 63335 32 100.0 34 NNNNNNNNNN ................................ CAACGTCTCCGACCCTTGACGTGGTCTCACGCCT 63401 32 100.0 34 NNNNNNNNNN ................................ GAGCCGGGGACGAGCGTGTAATCCTGCTGCGCCG 63467 32 100.0 34 NNNNNNNNNN ................................ CATAATCCTGAAACGGATGGCCGAGCTTGAGAGT 63533 32 100.0 34 NNNNNNNNNN ................................ TGGGCGGTCCATGCGGTCGGTCTGCATGGACGCC 63599 32 100.0 35 NNNNNNNNNN ................................ CCCGAAATATTACTTGAGCGCGCGGGCCTGTCGGG 63666 32 100.0 34 NNNNNNNNNN ................................ TCCCTTGCGAAGGAAGCGATGTCAAGGCTAGGTG 63732 32 100.0 34 NNNNNNNNNN ................................ CCCGCGGCAATGCGCGCGCCCAGTGCGCTGCGTG 63798 32 100.0 35 NNNNNNNNNN ................................ CCGGCCCGGTTCACACCGTCCCATGTTTCGGCGAC 63865 32 100.0 36 NNNNNNNNNN ................................ GCTCTGCGAGGTGCTGAATGCGCGCTGTCGCGAGTG 63933 32 100.0 35 NNNNNNNNNN ................................ ATCGGCCAGCCAGAGGTGATCCGCATTTCAGTCAG 64000 32 100.0 35 NNNNNNNNNN ................................ CTGGGTCCGCTGATCGGGCGCGAGATCGACCTACT 64067 32 100.0 35 NNNNNNNNNN ................................ ATCAGCGCACATTCCGACACCTTGTGAATGGCATC 64134 32 100.0 38 NNNNNNNNNN ...........T.................... GGCGTGTTGAGCCGGTTCCCCCAAGTCGGGTTACGTCG 64204 32 100.0 35 NNNNNNNNNN ................................ GTCACGTTCGATAAGCATAACCGCCCCCTTCACTC 64271 32 100.0 35 NNNNNNNNNN ................................ GATTCCACCGCTTCGGTGTGGTCGTCTTCCTCGAA 64338 32 100.0 33 NNNNNNNNNN ................................ GATCGGTGAGCGCCAGCGGCAGAGCGACACGGC 64403 32 100.0 35 NNNNNNNNNN ................................ GATTCCACCGCTTCGGTGTGGTCGTCTTCCTCGAA 64470 32 100.0 34 NNNNNNNNNN ................................ TCATGTCGTGGTCCTGACCATAGTCTTCGTCCAG 64536 32 100.0 35 NNNNNNNNNN ................................ AATCCGATCCTTGCGCTGCAATCGTGTATACGTCA 64603 32 100.0 34 NNNNNNNNNN ................................ AACAGGAGGGCACCCATCTGTGGCGCAAATCTGT 64669 32 100.0 34 NNNNNNNNNN ................................ CTTCTGTTCGGCATCGCCGGCGCGTCTGGTTCCG 64735 32 100.0 34 NNNNNNNNNN ................................ AAGATCCATGTCCTTCCAAGCGCATTCCCTAAAT 64801 32 100.0 35 NNNNNNNNNN ................................ GGGAAACGAACCGTGATGTCGTGGCGGAAAGAAAG 64868 32 100.0 1 NNNNNNNNNN ................................ NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 30 32 34 GTTTCAATCCACGCTCCCGCACAGGGAGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [7,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.60,-4.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [45.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [99,184] Score: 0/0.18 # # Final direction: R [0.74,5.18 Confidence: HIGH] >NC_010159 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1783634 28 100.0 32 NNNNNNNNNN ...GATTAT................... TCAGGGGACTGGCGAACAATGTCTTTCATGAT 1783694 28 100.0 32 NNNNNNNNNN ..................A......... ATTATCTGAATGGCATTTTCTTTGGCGCAGAT 1783754 28 100.0 32 NNNNNNNNNN ............................ TCGCCATTCCGTGAACCTGAGCGCGTTCGCGA 1783814 28 100.0 29 NNNNNNNNNN ............................ TCGTCAATGAATTGCGGGACGTTCCGGCG 1783871 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 5 28 31 TTTCTAAGCTGCCTGTGCGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [361,339] Score: 0/0.18 # # Final direction: R [0,1.42 Confidence: HIGH] >NC_010162 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 388616 36 100.0 36 TGGGAGGCCT .................................... TTGCCGCCGTAGACTCCGTTCCACGCGTCGCCGATC 388688 36 100.0 39 GTCGCCGATC .................................... GTCTTGCCGAGCTTCTTGCCGATCTGCTCGATGATCGCG 388763 36 100.0 39 GATGATCGCG .................................... CGGCGCTCCGCCTCGTCGGCGCGCCGTTCGCAGTCGGCC 388838 36 100.0 35 GCAGTCGGCC .................................... CTCGCCCACCCCTCTGCCACCGCCCTCCCGTAGGT 388909 36 100.0 39 TCCCGTAGGT .................................... GGCGACGGCGCGCGGCGGGGCGACGCCTGATGCGCACCA 388984 36 100.0 37 ATGCGCACCA .................................... GCTCGCTCGCCGCGTCGGGGACGATGGGCGTGGAGGT 389057 36 100.0 36 GCGTGGAGGT .................................... TCCAGCCACTGCGCCCTGAACTCCTCTCGCCTGCTC 389129 36 100.0 37 TCGCCTGCTC .................................... CTGGAACCACTCGCGCTTCATGCCGATCCGAGTGGCG 389202 36 100.0 CCGAGTGGCG .................................... CTCCGCGCTCC ========== ====== ====== ====== ========== ==================================== 9 36 37 CTCTCCGCCGCTGAAAGGCGGCGGCCCCATTGAAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-13.30,-11.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [41.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [736,1393] Score: 0/0.18 # # Final direction: F [1.01,0 Confidence: HIGH] >NC_010162 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 12787348 36 100.0 34 NNNNNNNNNN .................................... CCGTGGTACGCGCCCCAGGGCACCTGGCATGCGG 12787418 36 100.0 37 NNNNNNNNNN .................................... ATCGGCTGCGGCTCGGGCTCCGGGGGCTCGGGAGGCG 12787491 36 100.0 34 NNNNNNNNNN .................................... ACGTCGATGAACTCCCCCGCCGACACGACCCCTT 12787561 36 100.0 37 NNNNNNNNNN .................................... CTGCTCCTCTCCCGCACCATCGCGGACGTCTGCCCCT 12787634 36 100.0 35 NNNNNNNNNN .................................... GGCTTGGCGGCGGTCTCGCTGTTGGGTGTCGGGGT 12787705 36 100.0 36 NNNNNNNNNN .................................... CGGCCATCGGCACCGACGAGGAGTCGGACCCGGCCC 12787777 36 100.0 37 NNNNNNNNNN .................................... AGCTCAGGCGTGTCGCCGGTGGCGCCGCTGGTCACGT 12787850 36 100.0 36 NNNNNNNNNN .................................... CCTCAGGCCTCGGTGAGGCGGACGAGCGCAACCCCG 12787922 36 100.0 37 NNNNNNNNNN .................................... TTGCCGGCGCCCCGGTCGCCGAACTCGAAGCCCAGCA 12787995 36 100.0 35 NNNNNNNNNN .................................... CAGGACTTCGTCAACGCGTGCCACGAGCAGCTCGA 12788066 36 100.0 34 NNNNNNNNNN .................................... AGCTGTTGCCGGTCGCGCTCGGCATCCGCGTCTG 12788136 36 100.0 34 NNNNNNNNNN .................................... GAAAGGACGTTGTCGAGCATGTAGCCTCCGGGAG 12788206 36 100.0 35 NNNNNNNNNN .................................... CCAGCGTCAGGGCTCGCCACGGGGCACGCTTCCAA 12788277 36 100.0 36 NNNNNNNNNN .................................... GTGACCGAGGCGTCCGACCCGCCGCCCCTCGGCCAC 12788349 36 100.0 36 NNNNNNNNNN .................................... AGCCCGAGGCGCTCTGCGAGCGTGGCGCGCATCATC 12788421 36 100.0 35 NNNNNNNNNN .................................... GTCTCGACGCGCCAGCCGATGCCGCGGAGCCCGAC 12788492 36 100.0 33 NNNNNNNNNN .................................... TCGGTCACGCCGGCTACATGGCGCCGGCCAGGG 12788561 36 100.0 37 NNNNNNNNNN .................................... CCGGAGAACCGGTGAGGCTACCGTGCACCAAGCGATG 12788634 36 100.0 37 NNNNNNNNNN .................................... TTGCCGGTCGCGTCGATGCTCGCGACCTTCTTGGGAA 12788707 36 100.0 35 NNNNNNNNNN .................................... CCACGCGAGCACTCGGCGAGATACGAGCCCTGCGA 12788778 36 100.0 33 NNNNNNNNNN .................................... ATGCTCCTTCCGCACCACGTCCGGCCCTTCCGA 12788847 36 100.0 38 NNNNNNNNNN .................................... TGGGTCCAGTGCGGCGGGAACATGGCCAAGGTCGCCAG 12788921 36 100.0 35 NNNNNNNNNN .................................... TACGCGACGCCGAGACGCTCGGGCGGCCCGTGCTT 12788992 36 100.0 34 NNNNNNNNNN .................................... ATGCAGCTCGCGAAGGCACGGTTCGACCCGGGCG 12789062 36 100.0 36 NNNNNNNNNN .................................... GTCGCGAGGGCCGTGAGGCGGTCCAGCGCGTCGGCC 12789134 36 100.0 34 NNNNNNNNNN .................................... TTGCCCAGCGTGAGACCGCCGCCGCGCGTGGCGA 12789204 36 100.0 35 NNNNNNNNNN .................................... ATGATGCCTCGCGAGTTCGCGGAGAAGATGCACGA 12789275 36 100.0 35 NNNNNNNNNN .................................... AACGCGCTCACGACGCTGATGAGCCGGTTCAGCGG 12789346 36 100.0 36 NNNNNNNNNN .................................... AAGCGAGAGTCGTTGCGCGAGCTGCGTCGAAAGGTC 12789418 36 100.0 38 NNNNNNNNNN .................................... CTCGAAACCGTGTTCGGTGACCTCGAGCGCCGCGGGTT 12789492 36 100.0 37 NNNNNNNNNN .................................... AACCCCTGATCCGTTTTGATTCCTTCATCGAAATCGA 12789565 36 100.0 35 NNNNNNNNNN .................................... CGGACGGGAGCGGTTACCGGTGGTGTTATAAGCGT 12789636 36 100.0 33 NNNNNNNNNN .................................... CGAGAGCGATGGGGCGTCTCTGTGGTCTTTTGA 12789705 36 100.0 37 NNNNNNNNNN .................................... ACTTCCAGTTGGATCTTATTTGATCCACTTAGTGAGT 12789778 36 100.0 38 NNNNNNNNNN .................................... AAGCGGAACACGCCGCGAAGGAACAGATCGGGGAAGGT 12789852 36 100.0 34 NNNNNNNNNN .................................... CTGTACGAGTTCCTGAACGGCACCCGGGGTCTGG 12789922 36 100.0 34 NNNNNNNNNN .................................... CCTACGCCGCTCGACGACCTCCTGACCGACCTCA 12789992 36 100.0 34 NNNNNNNNNN .................................... TCTCGCTCGAGCTCATCTACGGGCTCGGCGCGCT 12790062 36 100.0 36 NNNNNNNNNN .................................... CTTGAGTACATCATCGCGGCCGTAACCGTCATCTTC 12790134 36 100.0 35 NNNNNNNNNN .................................... ACGCTTCGGCATGAGTATGACGGCGTGCCGATCGG 12790205 36 100.0 36 NNNNNNNNNN .................................... AGCCCGGCCGACATGACACCCATCGACTGGGGTGCG 12790277 36 100.0 34 NNNNNNNNNN .................................... CGGAATAGCTACCGAGAGAACCGCCCGGACTGGG 12790347 36 100.0 35 NNNNNNNNNN .................................... ATGTTGGCTAGTGGATACGTCGTCCCGTTGAGCAC 12790418 36 100.0 34 NNNNNNNNNN .................................... GTGACCGAGGTGCTCGTGGACCAGGCGCTCGTGC 12790488 36 100.0 37 NNNNNNNNNN .................................... TGCCAGAGGGCGTCGGCGGTCAGCGGGGCCTTGATGG 12790561 36 100.0 34 NNNNNNNNNN .................................... AGGCGGGGGACGATCACGCCGCTGACGCGTTCCT 12790631 36 100.0 35 NNNNNNNNNN .................................... CTGACCCGCACCGGCGGCGTCGGCACCTACACCGA 12790702 36 100.0 34 NNNNNNNNNN ....G............................... CCATGGATTGGGAGCTTCACGACGGCGAAAAGCT 12790772 36 100.0 39 NNNNNNNNNN .................................... CTCTTCCACGAGCCCACCGGCCACAGCGGGCTCGGTCGT 12790847 36 100.0 37 NNNNNNNNNN .................................... TGTGCGGCGAAGCCTCGGCCGATCGTCGCGGTCTCCC 12790920 36 100.0 34 NNNNNNNNNN .................................... GCGTCCACCGCGGCGAGGTGACGAACGGACCCGG 12790990 36 100.0 35 NNNNNNNNNN .................................... TGGAGTCTGGCCATGGGCCTCGTCAGGGTGATCGT 12791061 36 100.0 36 NNNNNNNNNN .................................... AATCGTGATTTTTTAATCGCTCATGTCTGCAAGCTG 12791133 36 100.0 33 NNNNNNNNNN .................................... AACGAACATGTCGTAGTATCTCCAGCGTTCCGC 12791202 36 100.0 35 NNNNNNNNNN .................................... GGCCAGTGCTCGCGGTCGACGCGCGCGCGATCCCA 12791273 36 100.0 35 NNNNNNNNNN .................................... ACGTTGGTGGTCTCGCATCAGATCTCGGTGGACGG 12791344 36 100.0 34 NNNNNNNNNN .................................... TCGTGGTCGACGCTGGCGCGAAGGCCCGGTGCGC 12791414 36 100.0 35 NNNNNNNNNN .................................... AACTCCGCGGCGACCTGCTCGTCGGTCAGGCCGGC 12791485 36 100.0 35 NNNNNNNNNN .................................... TCGCGCAGCACCCCGGCGGGCTTCTCGCCATTCCT 12791556 36 100.0 35 NNNNNNNNNN .................................... AGGTCCGGCGGGACGGCGAACATCGAGAGGCCGTC 12791627 36 100.0 35 NNNNNNNNNN .................................... ATGCCCTTCACGGAGAGCTGGATCGCGCGGTCGCG 12791698 36 100.0 35 NNNNNNNNNN .................................... CCGCACCTCGACGATCAACTGCGCAGCGCGCTGCC 12791769 36 100.0 35 NNNNNNNNNN .................................... ATTGCGCCGCCGTTGACGATCGTAAACGCGTACAT 12791840 36 100.0 35 NNNNNNNNNN .................................... CTGGAAACCCGGTTCGGCCAAGACTGGCAAGGGTG 12791911 36 100.0 35 NNNNNNNNNN .................................... ACGTCTGGCCACGTCTTCTACGAGCCGTCCACGCG 12791982 36 100.0 34 NNNNNNNNNN .................................... TGGGCCATCGGCGCGTGGGACGTCCCAGCCCTCT 12792052 36 100.0 34 NNNNNNNNNN .................................... TACAACTTCCATCCACCAAGCTCTTCTACCAACT 12792122 36 100.0 35 NNNNNNNNNN .................................... TAACTGATGAAGATGTAGATCGATTTCTGCCACCA 12792193 36 100.0 35 NNNNNNNNNN .................................... ACCTCGAAGGTGCCCTGAAGCTCGTTGACCTCGAG 12792264 36 100.0 36 NNNNNNNNNN .................................... TACGAGTAGCTGAGCGCGAGGAAGGCGACGGCTTGT 12792336 36 100.0 37 NNNNNNNNNN .................................... CGATAGAGATACTCCGGCATCGCCAGACGCTCCATGC 12792409 36 100.0 35 NNNNNNNNNN ..........................T......... ACCCCCACGGCGCCGAAAGTAAGCAGAGCTGCGCA 12792480 36 100.0 35 NNNNNNNNNN .................................... CTATGCGGCAGACATGGTGCTTGTCCACACACCAT 12792551 36 100.0 33 NNNNNNNNNN .................................... ACAGCGGCGAACTCACGGCGAGCTTTATCACGC 12792620 36 100.0 35 NNNNNNNNNN .................................... CCGCTCGGGATCATCATCCCCGAGCGTCACCAGCG 12792691 36 100.0 35 NNNNNNNNNN .................................... CTCTGCAGGAGCTCGCAGTAGCCCGTCCGCTCCTC 12792762 36 100.0 38 NNNNNNNNNN .................................... TGGCCGAGAACGAGCCGGTCCGGCTGTCGACGCTGGAC 12792836 36 100.0 36 NNNNNNNNNN ........................A........... CGCGCCGCCGAGTCGCTGCGGGCGAAGGAAGCGGAG 12792908 36 100.0 36 NNNNNNNNNN .................................... GTGGGTCGGCGGCGGGATCCACTCCTGCAGTGCAGG 12792980 36 100.0 36 NNNNNNNNNN .................................... ATGACGCGCGAGAACACGGAGATCGATGTCGCCGGA 12793052 36 100.0 36 NNNNNNNNNN .................................... CTTCACCACCGATACGAAGCGATCCGCGTCGCCCTG 12793124 36 100.0 35 NNNNNNNNNN .................................... ACCGAGGAGGAGGCCGCGCAGATCGCGCCGCACCT 12793195 36 100.0 36 NNNNNNNNNN .................................... TGGAAGTAGTGCTGTCCTCGTCCTGGCGTCGAAAAA 12793267 36 100.0 37 NNNNNNNNNN .................................... CCCGCGTGCAGCGGCACGGAGGTGCGCTCCGCGTCGA 12793340 36 100.0 35 NNNNNNNNNN .................................... ATCCCTCGGCGCACGAGCCCGCGCACGCTCGCCAC 12793411 36 100.0 35 NNNNNNNNNN .................................... ATCCTCGGCGGTACCGACGATGACGGGATCATCGC 12793482 36 100.0 34 NNNNNNNNNN .................................... CAGTGAACCCGGAGGGCAACGATCCCTCAACCTG 12793552 36 100.0 35 NNNNNNNNNN .................................... ATGCTGGACCCGGGGCGCGATCCCATGAGCGGCGA 12793623 36 100.0 35 NNNNNNNNNN ..........................T......... ATCACGTACCGAGTCGACCCAGAGGGGAGCTTGCG 12793694 36 100.0 35 NNNNNNNNNN .................................... TGCGTGCCGAGGCCCGCGCGCGCATCGAGGCCGAG 12793765 36 100.0 1 NNNNNNNNNN ...C.............................T.. NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 91 36 35 GCGATCCCCGCCGTGATGCCGGAAGGCGTTGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.60,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [250,30] Score: 0.18/0.18 # # Final direction: F [1.23,0.37 Confidence: MEDIUM] >NC_010162 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 389425 36 100.0 35 CGCTTCTTCC .................................... CTGGAAGACATGGGCGAGAAGCCGCGCGGCGCGTG 389496 36 100.0 39 GCGGCGCGTG .................................... TTGAAGTCGCCGCCCATCGCGTCAACGACGTTGTTCAGG 389571 36 97.2 39 GTTGTTCAGG .......A............................ GCGCGGCCCATGGGCTCGTGCGAGCCCGAGGTGTTGCAG 389646 36 100.0 38 GGTGTTGCAG .................................... AGCTTCTTGTAGTTGAACTGGTTGGGATGCGCGTTGTT 389720 36 100.0 39 GCGCGTTGTT .................................... ACAGCGTGGCCGAGGTCGCGGGACAGCGACTCTGCGTCA 389795 36 100.0 37 CTCTGCGTCA .................................... AGGCCCACCGCTTCCACCATACGCAGGTGAGCGGCGG 389868 36 100.0 41 TGAGCGGCGG .................................... GATGGGTCGCAGTGCTCCGAGGACCTCTGCGACCTCGGGAC 389945 36 100.0 40 ACCTCGGGAC .................................... GAGGGCCCGGACGACGGAGATGACCGCGATGCGGCTTCGC 390021 36 100.0 36 GCGGCTTCGC .................................... TGCCTCATCGCGCGCGACCCGAGCGCGCCCGCGCTC 390093 36 97.2 36 GCCCGCGCTC ................T................... CGCGTCATGGTCCCGGAGATGGCCACGATCCTGGTC 390165 36 100.0 39 GATCCTGGTC .................................... GCCACTCAGCCCCGGGGACCCTGTGGCTGTGTTCTTTGC 390240 36 97.2 40 TGTTCTTTGC ..............T..................... CGCCCGCTGGGCTTCGTTCTGCTGACGGCTGAGGCCTTCG 390316 36 97.2 35 GAGGCCTTCG ................T................... CGCGATACGCTCATCCGGAGCGCAGGCTACTCGCC 390387 36 100.0 GCTACTCGCC .................................... CTCACGAGCA ========== ====== ====== ====== ========== ==================================== 14 36 38 CTCTCCGCCGCTGAAAGGCGGCGGCCCCATTGAAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-13.30,-11.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [35.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1545,208] Score: 0.18/0.18 # # Final direction: F [1.6,0 Confidence: HIGH] >NC_010162 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 7332113 36 100.0 37 NNNNNNNNNN .................................... TGAAGTGGCGGCCAACTGGGGAATACCTGATGTGGCT 7332186 36 100.0 40 NNNNNNNNNN .................................... ACCCTTCACCTGGCCGTCCACCAGGACCCAGCCCGCGGGC 7332262 36 100.0 38 NNNNNNNNNN .................................... ATCGCACAGAGTCCCACCGTCCCGTGATCGAATAACCG 7332336 36 100.0 39 NNNNNNNNNN .................................... AGGTACCTGGGCTGGGGGCGCCTGCCAGCGAGCCAGCCG 7332411 36 100.0 36 NNNNNNNNNN .................................... CCGTCCCAGCGCAGGTCGGCCTCGGCCACGAGGTGC 7332483 36 100.0 38 NNNNNNNNNN .................................... TGGCCGAGCTGCCGGAACACCTGCTCTCCCAGAGCGCG 7332557 36 100.0 52 NNNNNNNNNN .................................... CGCAGGACCGGCGTCGTGCACGGTAGCCTCACCGGTTCTCCGGCTAGACGAG 7332645 36 100.0 39 NNNNNNNNNN .................................... CGCAGGACCGGCGTCGGCGCGTCGCGTTCCGGGAAGGTG 7332720 36 100.0 38 NNNNNNNNNN .................................... CGCGGCAGGCGCGCGACGTGAGGTCGATCCGCGGTTGC 7332794 36 100.0 38 NNNNNNNNNN .................................... CGGCCTCACGTCGTCGGGAGGACATTCGTGTTCACGGC 7332868 36 100.0 36 NNNNNNNNNN .................................... GAGGCGTACCAGGTCGTTCTCGGAAAGCTTGTACTC 7332940 36 100.0 39 NNNNNNNNNN .................................... AAACAGTGCTGTCTGTGGCCGCCGAGATGCGACAGATCA 7333015 36 100.0 36 NNNNNNNNNN .................................... TGATATTTGACGTGCATGGTTGTGCCCCAGTAGTTA 7333087 36 100.0 39 NNNNNNNNNN .................................... GGGTCGTTCAGGTCACGGATCGGAATCGTCGGCATGGGG 7333162 36 100.0 37 NNNNNNNNNN .................................... TCCATGACCCTGCACCGCACCCGTCGCGGGCTTCTTC 7333235 36 100.0 38 NNNNNNNNNN .................................... GCAGGGTGGCCCACGTCGCTGGCAATCCTTCGATCCGG 7333309 36 100.0 37 NNNNNNNNNN .................................... CGCGAGGTCGCCCGGGGGCCGCGCGCCGCTCCTGGTC 7333382 36 100.0 39 NNNNNNNNNN .................................... AGCGTGTCGAGGCCCGCCGTTACTGCGGCGGCCTCCGTG 7333457 36 100.0 36 NNNNNNNNNN .................................... CAGTTGCAGCAGGAAGTCTACACCGTCCACGTCGGG 7333529 36 100.0 35 NNNNNNNNNN .................................... GTCTTGGCCTGCATCATCGCCCAGACGACATCGGC 7333600 36 100.0 39 NNNNNNNNNN .................................... TGATCATTCGAGTCTCGAAGCCGACCAATCTCGAACGAG 7333675 36 100.0 35 NNNNNNNNNN .................................... ACGTTGACGCGGAACACGCCCTGCCGCTGCGCCTG 7333746 36 100.0 40 NNNNNNNNNN .................................... TCCATGTGGCTGAGCTGGGCGTAGGTCTTGCCGCCGACGT 7333822 36 100.0 37 NNNNNNNNNN .................................... GGGTACTACTACCAGGGGCAGGACGGCGCGCCGACCG 7333895 36 100.0 41 NNNNNNNNNN .................................... TAGAAGTCGTAGTCGGCCCCGGGCGGCTTGATCGTCACCGC 7333972 36 100.0 37 NNNNNNNNNN .................................... TCTGATACCGTCAGGTTGCGTAATACCTTCTTTTGCA 7334045 36 100.0 36 NNNNNNNNNN .................................... ATGGGGTTGGCCTTGGCATGCTCCAGCCTGGCCTCA 7334117 36 100.0 40 NNNNNNNNNN .................................... GAGATCCGGGTCTGGATCTGGCCCACCACCAGGAGCCCGA 7334193 36 100.0 37 NNNNNNNNNN .................................... CAGTTCTGCCTCAGCTCCCGGAAGGCATCATCCACGG 7334266 36 100.0 36 NNNNNNNNNN .................................... CCCCGCCGTCATCAGGAAGGGAGCAGGCCCCGAGGG 7334338 36 100.0 39 NNNNNNNNNN .................................... ACGAGCTTCGCGCGGAGCGCCGCAAGCTCTCCCTCCGCC 7334413 36 100.0 37 NNNNNNNNNN .................................... AACGTGGATCGGTCCAGGTGCGCGGGGACTTCTCGGT 7334486 36 100.0 37 NNNNNNNNNN .................................... AACGTGGATCGGTCCAGGTGCGCGGGGACTTCTCGGT 7334559 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 34 36 38 CTCTCCGCCGCTGAAAGGCGGCGGCCCCATTGAAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-13.30,-11.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1038,31] Score: 0.18/0.18 # # Final direction: F [0.92,0 Confidence: HIGH] >NC_010162 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 7335521 36 100.0 36 CGACGTGTTC .................................... CCGCGAACCTGCTGAAGGCGCTGCTGAAGGAGAGCG 7335593 36 97.2 36 AAGGAGAGCG ..................................T. CTGATCGCGGCCTCGCCCACGTCGCGCGCGAGCAGC 7335665 36 100.0 40 CGCGAGCAGC .................................... GACCCGACGACGCTCCCGGGGAAAATCGGCTCGCCCTACT 7335741 36 97.2 38 TCGCCCTACT ...A................................ AGCGTGTTCTCTAGGTATTTCTGCATCCAGCCCCTCTC 7335815 36 100.0 38 AGCCCCTCTC .................................... TTGCAACCTGTCCACGAAGCCTTCCTTGAGCTGCGTTG 7335889 36 100.0 39 AGCTGCGTTG .................................... TCGAGAGCCGCCCTGTTCTCGGCGATCTGCTCCTTCTCT 7335964 36 100.0 40 CTCCTTCTCT .................................... ATCCCGCGGTGGCGTTGCGAGAGCGCGATGTTCAGCGCGT 7336040 36 100.0 36 TTCAGCGCGT .................................... ATGGCCTGCCAGGCGTAGATGGCCTGCTCCGCGGTG 7336112 36 100.0 38 CTCCGCGGTG .................................... AAGGGTAGGACGTCGCACGTTGCATGCTGTTGTCCCGC 7336186 36 100.0 36 GTTGTCCCGC .................................... GAGATGTGCGATGAAGCCGAACGTTTGGGAATTCCT 7336258 36 100.0 37 GGGAATTCCT .................................... TGAGATGAGCGTTACGGCCTCGGGCGCGCGACGGGTG 7336331 36 100.0 37 GCGACGGGTG .................................... ACGGCTGGAAGGAACGCCTGGGCAAGTTTGCCGATTC 7336404 36 100.0 37 TTGCCGATTC .................................... ACCTCGGCGAGGTTCCGCGCCGGCCGCCGCTCTTCGA 7336477 36 100.0 36 CGCTCTTCGA .................................... GACACGTTCGAGCGCATGACGTAGAAGTCAACGAAC 7336549 36 100.0 36 GTCAACGAAC .................................... TCCTCGACCACGCCGTAGGGGATGCGCGCCTCGGCG 7336621 36 100.0 37 CGCCTCGGCG .................................... GAAAGCGTCGTGTGCATGGCGGCGAAGAGGGCGTCCG 7336694 36 100.0 35 AGGGCGTCCG .................................... ATCGCGGTGTTCGCGGTGGAGGGCTCCCAGCCTTG 7336765 36 100.0 36 CCCAGCCTTG .................................... AGAACCGGAGCGGGCGAAGCCCTACTCCTTGATCAT 7336837 36 100.0 35 CCTTGATCAT .................................... CAGTGGGCGACGTACGAGGCCGCGCGGAAGCTCGG 7336908 36 100.0 38 GGAAGCTCGG .................................... CGACAAGATGCTCAACTGATTGTGAATCATCTGCTGCA 7336982 36 100.0 36 ATCTGCTGCA .................................... AGGATGAAGGTCTCCTTACGGCTCCGGACCTTCTGG 7337054 36 100.0 38 GACCTTCTGG .................................... ATCGCGGTGCTGCCGTTGTAGATCGTGATCGCGAGCGG 7337128 36 97.2 36 TCGCGAGCGG ........T........................... CCCATATAGAAGTCGACCGGCTCAGCCTGGACCCGC 7337200 36 94.4 CTGGACCCGC ........T.......C................... AAATCCTGCC ========== ====== ====== ====== ========== ==================================== 24 36 37 CTCTCCGCCGCTGAAAGGCGGCGGCCCCATTGAAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-13.30,-11.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [41.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [96,695] Score: 0.18/0.18 # # Final direction: F [1.42,0.18 Confidence: HIGH] >NC_010162 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 8022139 37 100.0 38 AGGCCTTCTT ..................................... AACTTCAAGGCCTTCATGGCCTGCGCAGACTATTGCCC 8022214 37 100.0 41 ACTATTGCCC ..................................... CCCTTCCCAATCTCAAGGGACAGGGGCAAGCGTTTCAAACC 8022292 37 97.3 40 GTTTCAAACC ..........................C.......... GCTCAAGTCAGTTACTGATCCAGTCGAGCTTGTTGAAATT 8022369 37 97.3 38 TGTTGAAATT .............C....................... GCGTCGGGTCTTGTTCTGATCACTATGGCGAGCTCGAG 8022444 37 97.3 41 CGAGCTCGAG ...............................C..... TCTGCATCCTGGATGGCGAGCGCGACTCTGATGGCGACGGT 8022522 37 100.0 40 TGGCGACGGT ..................................... ATCGGATCGTGGAAGCGTCCTTTGCCGCGTACGGCTTCGT 8022599 37 100.0 40 ACGGCTTCGT ..................................... AATCATTCTCAGCTGCCCCAACCCCACTCCCGGCGATCCT 8022676 37 100.0 41 CGGCGATCCT ..................................... CTCTCACTTTTTCTCAAGTGGTTGAGGCCCAGTAGCAACTC 8022754 37 100.0 GTAGCAACTC ..................................... AGTCACCTCA ========== ====== ====== ====== ========== ===================================== 9 37 39 GTTTCAATGCCCTTTGAGCAGGCATGTCCCGTTCGGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [5,11] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.80,-7.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [23.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [105,517] Score: 0.18/0.18 # # Final direction: R [0,6.1 Confidence: HIGH] >NC_010175 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3962639 37 100.0 36 NNNNNNNNNN ..................................... TGCCACCGGCCCCGGCCGGCGTAGGCGACGGAGTAG 3962712 37 100.0 39 NNNNNNNNNN ..................................... CGTTGACGTGGTCGTCGAGCTGGTTCCACGGGTGCGGGA 3962788 37 100.0 36 NNNNNNNNNN ..................................... TGGAGCGATGACGCAGATGACGCAGGCGGCAGCGGC 3962861 37 100.0 37 NNNNNNNNNN ..................................... CGCGGCTAATTTCGCGCAACAAAATTGCGCGTGTTTG 3962935 37 100.0 37 NNNNNNNNNN ..................................... TGTAATGTTGTGTCCAGTTCGACCGACATACCAGCGC 3963009 37 100.0 37 NNNNNNNNNN ..................................... ACGCAATCAGCCGCGATAGCTGGCTATGGTCGGCGGA 3963083 37 100.0 36 NNNNNNNNNN ..................................... TGCGTTTGCTGGCACGCGCCGCACTTGATGGTCAGC 3963156 37 100.0 35 NNNNNNNNNN ..................................... CATACGGAGCCTGATCAAACCCATGCTCCGAATGT 3963228 37 100.0 37 NNNNNNNNNN ..................................... ACGACTTCGTGCGCATTGCCACCGACCTACACAACAC 3963302 37 100.0 38 NNNNNNNNNN ..................................... GTTCTTTTCGCGTTCCGGGAGTTGTTTATAAAACGTAG 3963377 37 100.0 36 NNNNNNNNNN ..................................... ATAATAGGCCGCCGAGTGTTGATCAAGAAAAAAATG 3963450 37 100.0 38 NNNNNNNNNN ..................................... TACATCATTTCCCTCGCGGCGTTGCACCTCTGCTGGCG 3963525 37 100.0 35 NNNNNNNNNN ..................................... CATACGGAGCCTGATCAAACCCATGCTCCGAATGT 3963597 37 100.0 37 NNNNNNNNNN ..................................... ACGACTTCGTGCGCATTGCCACCGACCTACACAACAC 3963671 37 100.0 37 NNNNNNNNNN ..................................... TCGTCACGTTTGCGACTGTACGTGCGGTAGAATACCA 3963745 37 100.0 37 NNNNNNNNNN ..................................... TCAAAAATTCCGCATCGTCGGCGTACCCAAGCGCAAT 3963819 37 100.0 36 NNNNNNNNNN ..................................... AAGCGCAATCTCCGCCGAGCGACGAACATTGCCTGA 3963892 37 100.0 36 NNNNNNNNNN ..................................... GTGTGTTATCTGGCCGGATTGACGTTCTGGCCACCA 3963965 37 100.0 37 NNNNNNNNNN ..................................... ACGGCGCCGAGAACGGCGTTAAGGAAATACTGGCCGG 3964039 37 100.0 36 NNNNNNNNNN ..................................... CACAACTGGTTGTAGTGTACTCGATGAAACAGGCGT 3964112 37 100.0 39 NNNNNNNNNN ..................................... ATCATTCGCTCTCTGGACGGGAACGGTCCGAACCATTCA 3964188 37 100.0 36 NNNNNNNNNN ..................................... CGAACGCTCACAGCAGTGGGTGAAAACGGCAACGGA 3964261 37 100.0 35 NNNNNNNNNN ..................................... GTTTGCTCGGCAATGGCGGTTAATTGCGGTTCGTA 3964333 37 100.0 35 NNNNNNNNNN ..................................... ATCTAACGTCACCACCGGCCTGGTCTCACAAGACC 3964405 37 100.0 36 NNNNNNNNNN ..................................... CTCTGTCTTGCGACGGGGATCAGGGCGGAGGCAGCG 3964478 37 100.0 36 NNNNNNNNNN ..................................... TCGGTCACGAACTGCTTTTGGACGGGGGAAGAAGAC 3964551 37 100.0 37 NNNNNNNNNN ..................................... CATTCGCCGTAAGGATTAGCAGCTCCTTAGTTTGCGG 3964625 37 100.0 38 NNNNNNNNNN ..................................... CATACCTGTGCTACGGATTGTCGGCGTATCTTTTTCTG 3964700 37 100.0 40 NNNNNNNNNN ..................................... GCCCCGGCCGGCGTAGGCGACGGAGTAGGGGTAGCGGTAG 3964777 37 100.0 37 NNNNNNNNNN ..................................... TGCTTTTCGTTGCCTCGCTGGTCGGGAAGCTCAGCGG 3964851 37 100.0 37 NNNNNNNNNN ..................................... GCGTTTTGCGGCGATGTCGGCACTACTGCCGCCGGCT 3964925 37 100.0 37 NNNNNNNNNN ..................................... ACGGTGAGCGGGTGCGCTCGGCGCGCTGGCTCGGCGC 3964999 37 100.0 36 NNNNNNNNNN ..................................... TGCCGAGCGCTTGCGCACGGACGATGTGATCCTCAC 3965072 37 100.0 37 NNNNNNNNNN ..................................... CGCTGCTGCTCGCAGCGTTGCGCGCATCTGCTGCATC 3965146 37 100.0 37 NNNNNNNNNN ..................................... TCTGCTTCCAGTTGTCGATAATTTGCTGCGCCTGCTC 3965220 37 100.0 35 NNNNNNNNNN ..................................... GCGTTTGAGCTTGAGCTTGACGAGACTGACGGCGA 3965292 37 100.0 38 NNNNNNNNNN ..................................... GCAAGAGTTTGTCAAGGGGTATTTTGAGAGATTTTCAG 3965367 37 100.0 38 NNNNNNNNNN ..................................... GGCAAGTGAGCTGGGCCGGCTCAAGCTTACGCAGCAGT 3965442 37 100.0 37 NNNNNNNNNN ..................................... ACCATCGTGCGCTACGCGACGGCCAGCGATGCGGTGC 3965516 37 100.0 37 NNNNNNNNNN ..................................... AGCGGTTTACCGCAGACGACATCGAGCGGCGGTACGG 3965590 37 100.0 39 NNNNNNNNNN ..................................... GTGTATCACTTGCAGCCGCCGCCTCTACAAGCGGCAACC 3965666 37 100.0 36 NNNNNNNNNN ..................................... TGACGTAATGTGGTCGTAATATGACGTTGACGTAAT 3965739 37 100.0 35 NNNNNNNNNN ..................................... ACTAATGTCGTTCAGCACGTGCTCATTCGCACACA 3965811 37 100.0 36 NNNNNNNNNN ..................................... AGCAGACGGAGCAGCGACGCGACATAATCAACATCG 3965884 37 100.0 37 NNNNNNNNNN ..................................... CGCGGCAAGGCCGGCCTGTAGCGTCTGCCCGACCGTG 3965958 37 100.0 36 NNNNNNNNNN ..................................... ACGGTGCAAAGTGGTGATCAAACAGTCGCCGGTTGG 3966031 37 100.0 37 NNNNNNNNNN ..................................... GTTCGTACCGAATAAGGCGGCACAATGATGTAGTTAT 3966105 37 100.0 37 NNNNNNNNNN ..................................... CCGAACGGCTACTGGCCAACATCCGCGAAGAGTTAGA 3966179 37 100.0 37 NNNNNNNNNN ..................................... TCCAGTTTTATGGGTTCGCGCGCGTATGGATTGCTTC 3966253 37 100.0 37 NNNNNNNNNN ..................................... GTAATGGTTTGGTAACGGGAGCGGATGTTGAAATCGC 3966327 37 100.0 36 NNNNNNNNNN ..................................... GTTTTTCGCACGCGCTACACGTCACTTCGATCATAA 3966400 37 100.0 37 NNNNNNNNNN ..................................... GTCCGGGCGGGGAGTTGCGCGTGCAGTCGCAGTTTAT 3966474 37 100.0 37 NNNNNNNNNN ..................................... GAGACAGTATGAGCGTCGAATGGATGGTTACAGTCAT 3966548 37 100.0 36 NNNNNNNNNN ..................................... TTGCTTTTGCTAAGAACCTTTTTCCAACGGCGACGG 3966621 37 100.0 35 NNNNNNNNNN ..................................... ACTAATGTCGTTCAGCACGTGCTCATTCGCACACA 3966693 37 100.0 39 NNNNNNNNNN ..................................... TACTCATGTGCGGGTCATTCTGGTAATACCATCGACATG 3966769 37 100.0 39 NNNNNNNNNN ..................................... GGCGCTGGCGCTGGCGTTGGCGCTGGCGTTGGCGTTCTT 3966845 37 100.0 38 NNNNNNNNNN ..................................... ACAGTGTTGCCGTTATCGCGCTACGTCAGGGCTGTTGA 3966920 37 100.0 38 NNNNNNNNNN ..................................... ACAGTGTTGCCGTTATCGCGCTACGTCAGGGCTGTTGA 3966995 37 100.0 34 NNNNNNNNNN ..................................... AGATGCCAGTCAAGATGATAGCTGCTGCGTTCAC 3967066 37 100.0 38 NNNNNNNNNN ..................................... GGTGCTTAATCCGCGCTGCGAGCAGCAGCGTTGCGCGC 3967141 37 100.0 39 NNNNNNNNNN ..................................... GGTTAGTTAGGAAGGAATGATACTATGCAACTGTCTCGT 3967217 37 100.0 39 NNNNNNNNNN ..................................... GAGTATTTCAACCGTATACATGTTAATCTCTTAATATCT 3967293 37 100.0 36 NNNNNNNNNN ..................................... GTACACCGCCTGCGGCGAGAGGCCGGCCAGCAGCCT 3967366 37 100.0 37 NNNNNNNNNN ..................................... TGTGATTGGTCACAATGTTAAACACCGCATTCTCGTT 3967440 37 100.0 37 NNNNNNNNNN ..................................... GCGGTGTGGCGTGATGCTCTTCCGGTATGCGCCCGTT 3967514 37 100.0 35 NNNNNNNNNN ..................................... ACGTATCACCCGCCGCGCTCTGCACCATTTGTGCG 3967586 37 100.0 38 NNNNNNNNNN ..................................... GTGTCGAAGCAATCGAGCAGAACGAAGTGATGTATGGC 3967661 37 100.0 39 NNNNNNNNNN ..................................... GGGATGACTTTGTTACATTAAACCCTGGCTATTACCTTT 3967737 37 100.0 36 NNNNNNNNNN ..................................... CTCACTACACTGTGGTGATGAGGCTTTTGTTTTTTG 3967810 37 100.0 35 NNNNNNNNNN ..................................... ACTCCACTGCCTAGCCCTACCCCGGCGCCTACCGT 3967882 37 100.0 35 NNNNNNNNNN ..................................... TTCCTTACATATCTTTTTGGACCGAATACTTCAAA 3967954 37 100.0 35 NNNNNNNNNN ..................................... TAAAGATTAATAGTATGAAAAGGCCTGCCAATAGC 3968026 37 100.0 36 NNNNNNNNNN ..................................... GTGCTAAAATACAATCGCTTAATCGTTTAACTTGAA 3968099 37 100.0 36 NNNNNNNNNN ..................................... TCGAAGGTGTCAATTTTACGGGAACAATCGAAATAA 3968172 37 100.0 36 NNNNNNNNNN ..................................... TATATACTATCCCTACGGGGAGTGGTATGGATACTA 3968245 37 100.0 37 NNNNNNNNNN ..................................... CTCACTACACTGTGGTGATGAGGCTTTTGTTTTTTGT 3968319 37 100.0 36 NNNNNNNNNN ..................................... TTATATTGCAGCGTACTGCCTGAGTGATGCACGGAT 3968392 37 100.0 37 NNNNNNNNNN ..................................... GGTCGATGCGTTGCGGGCAATCGCGCTTGATGAGCAG 3968466 37 100.0 36 NNNNNNNNNN ..................................... TTCGGCAGAGGGCAGGGTCACGTCGGGATGCTGGAC 3968539 37 100.0 36 NNNNNNNNNN ..................................... ATCGAATTCGAATCTCATTGCTTCTCTCGACTACCG 3968612 37 100.0 35 NNNNNNNNNN ..................................... GCCAGCGTCTGCGCGATCTCCTCGACCAGCTCCTC 3968684 37 100.0 41 NNNNNNNNNN ..................................... CTGAGATGCCGGACCGCGCGGCTCAGATTGCTGCGTTTTTG 3968762 37 100.0 35 NNNNNNNNNN ..................................... CGTCGACGTGGTCGTCGAGCTGGTGCCGCGATTGC 3968834 37 100.0 35 NNNNNNNNNN ..................................... CCTGAGTCGTGCGCGTTCGGCTGGCGCGAGTTTGC 3968906 37 100.0 37 NNNNNNNNNN ..................................... ATAACGGTTGCTGCGACACGGGAGGGCGAGCTAATGC 3968980 37 100.0 40 NNNNNNNNNN ..................................... CGCGGATGCCCTCGGCATGGCGCTTGCTGCCGAGCGCCGC 3969057 37 100.0 36 NNNNNNNNNN ..................................... AGGCGTTGCAGCGGTTGGTGGCTGGCGGCATCCTGA 3969130 37 100.0 36 NNNNNNNNNN ..................................... ACGTTGTGCGTGCAGTCGCGGCGAGGGGTGCATCTG 3969203 37 100.0 35 NNNNNNNNNN ..................................... CTCCAACGCATCGGTATACCAGCGATCATACCGCT 3969275 37 100.0 37 NNNNNNNNNN ..................................... GTCCGGGCGGGGAGTTGCGCGTGCAGTCGCAGTTTAT 3969349 37 100.0 36 NNNNNNNNNN ..................................... CGTGCGTCCATCACGCTATTACGGCTGGTACGATAC 3969422 37 100.0 38 NNNNNNNNNN ..................................... TCGATTGCAACAGGGTAAGCGCTGCCGTCACCCCTGCG 3969497 37 100.0 39 NNNNNNNNNN ..................................... AGTTTCTGCTGCCGCTCCTCTTCATGCTTGGCGTGCTCC 3969573 37 100.0 36 NNNNNNNNNN ..................................... CCGTGCTCAATGACCGGCAAACGGCGCAATGGGAGC 3969646 37 100.0 35 NNNNNNNNNN ..................................... CGCAGCCATGACCGACCGAAAGGTGGCGGATGATG 3969718 37 100.0 40 NNNNNNNNNN ..................................... TCTCATTATCTTCTTTTTTTCCCCTATCTCTCATCATCCC 3969795 37 100.0 37 NNNNNNNNNN ..................................... ACGGTAACGTTGCTACGCGCAAGTGTGTGGTGTACAC 3969869 37 100.0 36 NNNNNNNNNN ..................................... AACATTGTTGCAGGTTTTGCTCTGGCAAGCGATCAA 3969942 37 100.0 37 NNNNNNNNNN ..................................... ATAAACGGTGACGTTGTTCATGGTCTTATCCTTTCTT 3970016 37 100.0 35 NNNNNNNNNN ..................................... GAAGATAAAAAAAAAGAGGAGGGGGAGTGATCCCC 3970088 37 100.0 36 NNNNNNNNNN ..................................... TGCGTTATAGCGCGCGCGCAGGGCCGGCACGGTCAG 3970161 37 100.0 37 NNNNNNNNNN ..................................... TCGTGATTGTCGCTGTGTCATACCAATTCCTTGCTAC 3970235 37 100.0 38 NNNNNNNNNN ..................................... GCTAACGCGGGTTTACTATAGCGCGGTTATCTGGCGTT 3970310 37 100.0 39 NNNNNNNNNN ..................................... TCGGCGCGAAGACGTGTTACATCGCCGGTGTACCACCGG 3970386 37 100.0 37 NNNNNNNNNN ..................................... CTTTTTTCACCCCCCGCTCTCTTCATCTTGTTTTCGT 3970460 37 100.0 37 NNNNNNNNNN ..................................... TGCTCGTTCATCGCGTACAGCTCAACGAGTACACCGC 3970534 37 100.0 35 NNNNNNNNNN ..................................... TCGAAAACGCCTCGACGATAGTGCTCGAGAAAGAC 3970606 37 100.0 36 NNNNNNNNNN ..................................... AGTACTGTAGTCGTGTTGAGGTTGCACTCATTACAT 3970679 37 100.0 35 NNNNNNNNNN ..................................... AAGCCGGCGCTGCCGGCTACGCGGCCATGGGCACA 3970751 37 100.0 38 NNNNNNNNNN ..................................... TGGTGATGTTACATCACGCATCGCCCGCGCCGAGGCCG 3970826 37 100.0 36 NNNNNNNNNN ..................................... CGTCTCGATAAGGCCGCGCTTGAAGCGACCCCAGCC 3970899 37 100.0 36 NNNNNNNNNN ..................................... CGTGGACATCACGAGGCCAAGTTATGTTTACAACGC 3970972 37 100.0 38 NNNNNNNNNN ..................................... GCGGTAATGTCAAGGCGGCTTATGTGCTTAATTTTTGG 3971047 37 100.0 35 NNNNNNNNNN ..................................... TTTTTCGAGCAATTTTCGAGCGCGCACTTGTCTGC 3971119 37 100.0 35 NNNNNNNNNN ..................................... TGCCGATATTCTCGGCGAGGACTGGTCCTTCCCGG 3971191 37 100.0 37 NNNNNNNNNN ..................................... CTGTTTGGCAATCGTCGCGCGATTGGTGCGCCAGCGG 3971265 37 100.0 36 NNNNNNNNNN ..................................... ACGCGCTACACGTGATTGAGTCGCTCAATACGACCA 3971338 37 100.0 38 NNNNNNNNNN ..................................... ATGACGGCGTACTCGATCCGGCGACGTAGGAGGGCGCA 3971413 37 100.0 38 NNNNNNNNNN ..................................... AGACAACGCAAGCAGTGCGCTGCGTAACGTGCAGCGCG 3971488 37 100.0 35 NNNNNNNNNN ..................................... CTCTGGAAAGAGATCGTTGCGACAGCACAAGCGTT 3971560 37 100.0 36 NNNNNNNNNN ..................................... TCGTGAACTCGCATAGTGCTTCCTTCAGGTCCGGGA 3971633 37 100.0 36 NNNNNNNNNN ..................................... TTGCCCAACAGATAAATGCAGCAAAGATGTGATCGT 3971706 37 100.0 36 NNNNNNNNNN ..................................... ATCGGGAGCGGCAAGCTGTGCGTGACGCGGTGCCAA 3971779 37 100.0 36 NNNNNNNNNN ..................................... TCGGGTTGTCGATCAACATACCGTACTGCTGCCAAG 3971852 37 100.0 35 NNNNNNNNNN ..................................... TGTCGCCGCCGGGAAGCCTGATCCGGTACGCCCAG 3971924 37 100.0 37 NNNNNNNNNN ..................................... GGGGGCGGCACTGGCGGAGCTGTCAAGGCTGCGCTAC 3971998 37 100.0 37 NNNNNNNNNN ..................................... ATCGCAATGCTCTTTTCGATGCTCGCGTTGTTCGCGT 3972072 37 100.0 35 NNNNNNNNNN ..................................... TCTTTACATGCACTTCAGGGATGGCCGTTTGAACG 3972144 37 100.0 36 NNNNNNNNNN ..................................... CGTGACACATCACCACGTGACACATCGCAACTTGAC 3972217 37 100.0 35 NNNNNNNNNN ..................................... TAAACACGCGGGAGGTGAATAGCAACTGCGTGTGA 3972289 37 100.0 39 NNNNNNNNNN ..................................... TCGTCTCCGCTGTCGCTGTCGCTGCTGTCGTTGTCGCCG 3972365 37 100.0 36 NNNNNNNNNN ..................................... ATTGACAAGCGACTGTCGCTGCTGCGCGTGCGTCGT 3972438 37 100.0 39 NNNNNNNNNN ..................................... CTGCAGCAGTCGCGTAGTAACTGCTACTACGAGCAGTGA 3972514 37 100.0 35 NNNNNNNNNN ..................................... GAGATCGACCCGGCTGGGGTCTCACAGGCGTTCAC 3972586 37 100.0 37 NNNNNNNNNN ..................................... TGGGGCGATGACGCAGACGGCAGCGGCAACGATGCTG 3972660 37 100.0 36 NNNNNNNNNN ..................................... TTGTACGACGCCTCCTGACGTGCGATTTATATATTG 3972733 37 100.0 38 NNNNNNNNNN ..................................... GAGGACGTCGAGAGTGGAATTGGGGTTCTCATCAACCT 3972808 37 100.0 37 NNNNNNNNNN ..................................... TTATATTTGGGTAATATGCCCAGTTCTTACACACAAT 3972882 37 100.0 37 NNNNNNNNNN ..................................... GAGACGTTTGAGCAAGATGGTAACGATTTGATATTTC 3972956 37 100.0 38 NNNNNNNNNN ..................................... GTTCACTAATCGTTACCGTTGGCATTTAGCACTCCCCT 3973031 37 100.0 35 NNNNNNNNNN ..................................... TGGATTATCGGCGCGGGTGTGGCCAACCATAATCA 3973103 37 100.0 37 NNNNNNNNNN ..................................... GGCAAAACGTATCGCGGTCGGAGCGGATACTTTCACT 3973177 37 100.0 36 NNNNNNNNNN ..................................... CGTAGATCAATAACCGTACCCTGTGTGTCAAGATAC 3973250 37 100.0 35 NNNNNNNNNN ..................................... CCTCTCGCGCGGTGATGGCTCGTTTACGCAGATAG 3973322 37 100.0 38 NNNNNNNNNN ..................................... CGGATGATAGCGATATTGAGGCGTTAAAGGCAGAGTTG 3973397 37 100.0 37 NNNNNNNNNN ..................................... GCGCTCGATAGCGCGGCGAAGGCTAACGGCGAAGTCG 3973471 37 100.0 35 NNNNNNNNNN ..................................... GTACTCGTTGTAACTAGACGCCGAAAGCAACCAAA 3973543 37 100.0 35 NNNNNNNNNN ..................................... TACACACACGAAGGCGTCATCAACGCAGTGAGGTT 3973615 37 100.0 37 NNNNNNNNNN ..................................... GGATTAAGTCACCGATTGGCTACGAGATCATCAACCT 3973689 37 100.0 34 NNNNNNNNNN ..................................... CGAAAAACGTTCCACATCGAGGAACCTTTGCCGT 3973760 37 100.0 35 NNNNNNNNNN ..................................... CTCGCAGCAATTTTGAACCGTCCGGCGCAGTTTCA 3973832 37 100.0 36 NNNNNNNNNN ..................................... CATCCCAATTATAATGGAGTCGGGATCACCCACAGG 3973905 37 100.0 37 NNNNNNNNNN ..................................... CAAATGGAATAATGCCCTATCCGCATACTCGTTGCGG 3973979 37 100.0 35 NNNNNNNNNN ..................................... TTCTACTGTCGTCATAACGAACACAAGTCAATCGA 3974051 37 100.0 36 NNNNNNNNNN ..................................... CGTACGCGGAGGAAATACCGCTGGCAACATCGCTCA 3974124 37 100.0 37 NNNNNNNNNN ..................................... TCGCTGTGGATGTCGGGGTTGGTGTCGGGAGCGATGT 3974198 37 100.0 39 NNNNNNNNNN ..................................... TTGACCAGAATAGGCCTGGCACTCGGCAAAGGAAGGTGA 3974274 37 100.0 38 NNNNNNNNNN ..................................... GCTTTGTCACCGAGCGCCGGATCGTCGAAGATACGCGC 3974349 37 100.0 38 NNNNNNNNNN ..................................... AACGCTCTCTAAGCGTGTGTTTAGGAGCGGAACGTCGA 3974424 37 100.0 36 NNNNNNNNNN ..................................... CGCGATGCGTATATCGACATTCCGCGACGCGGTTCG 3974497 37 100.0 37 NNNNNNNNNN ..................................... TCACTCATCTTTGCGACAGGGTACGAACGTGATAGCC 3974571 37 100.0 36 NNNNNNNNNN ..................................... ATTGTACCCGTAGGCGGATCGGGAGGGATAAACCGA 3974644 37 100.0 36 NNNNNNNNNN ..................................... CTACAGGCTTGATTATCCGGCAGATTTTGGGGTTGA 3974717 37 100.0 36 NNNNNNNNNN ..................................... GGGACTACTGCCGGCGCGAACGATACAATCCTATTG 3974790 37 100.0 36 NNNNNNNNNN ..................................... CTTTCGTTGCCAGCAGCAACGCGCCGTAAACGCCGA 3974863 37 100.0 36 NNNNNNNNNN ..................................... CTTTCGTTGCCAGCAGCAACGCGCCGTAAACGCCGA 3974936 37 100.0 35 NNNNNNNNNN ..................................... TCGATCGCAAGCGTTCCGTCTTCAATCTCCGTCAC 3975008 37 100.0 37 NNNNNNNNNN ..................................... GCGCGAACGAGCGGGTCGGGACATCGCTGAATCCCCG 3975082 37 100.0 35 NNNNNNNNNN ..................................... GGTAAGCTTGCCCGCCAGCCCTTTGTCGTCTTCTC 3975154 37 100.0 36 NNNNNNNNNN ..................................... GCTGTCGGGCAGCGAGGCAATGGTTCGTTCCACCAG 3975227 37 100.0 36 NNNNNNNNNN ..................................... ACTTGTCAAGAGGGAAATCTGAGAAATCTTGATGAA 3975300 37 100.0 35 NNNNNNNNNN ..................................... GCCATCAGAAAGGTATACAACTCGGTTAAGAATGG 3975372 37 100.0 37 NNNNNNNNNN ..................................... GTCGGGCGATCCAGCACTGCTGCAAATCTTTCGCTCT 3975446 37 100.0 36 NNNNNNNNNN ..................................... AGCTGTTTTAGAACGGTAGGTCTTCATTATTCTCCA 3975519 37 100.0 36 NNNNNNNNNN ..................................... CGTTTTGAAGGAAGCTGAGGCAATTTTGAATCACAA 3975592 37 100.0 38 NNNNNNNNNN ..................................... GCTTTGTCACCGAGCGCCGGATCGTCGAAGATACGCGC 3975667 37 100.0 36 NNNNNNNNNN ..................................... CTTCTTCTTCGTCTAGCTCTTCGTCTTCCCCATCTC 3975740 37 100.0 37 NNNNNNNNNN ..................................... TCGCTCGTCTCCCACTCTCCGCACTCTAACCCTTCCG 3975814 37 100.0 35 NNNNNNNNNN ..................................... CGCTTGCTCGCGGATGGGTATGTAACACTTCACGT 3975886 37 100.0 23 NNNNNNNNNN ..................................... GTAGAAGGGGAGTGGGGAATAGG 3975946 37 100.0 1 NNNNNNNNNN T..........A......TC..TA.A.C.CTGA..C. NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 182 37 36 CTTTCAACAATTTCGGCTCACGGTAGAGCACTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.05%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-5.60,-5.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [305,171] Score: 0/0.18 # # Final direction: F [0.41,0.27 Confidence: LOW] >NC_010175 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 4533814 37 100.0 38 GTGAGACGGA ..................................... AGGTTCAAAGATTAGTTCTCGGCGGATCGGTAATCCGT 4533889 37 100.0 38 GGTAATCCGT ..................................... TCTCACTTTCTAGCGTAGCTAAAACTTGCCTGTACGAA 4533964 37 100.0 37 CCTGTACGAA ..................................... GTAAACGCCGAAGTCGCCCACGTTCTCGGGCATACGA 4534038 37 100.0 36 GGGCATACGA ..................................... GCGTGTGTGTGGTGTTACTCAGCCGGCTGGCCGTTG 4534111 37 100.0 38 CTGGCCGTTG ..................................... GTAACACCACACACACGCCCGGATCGTGACGCGCCATC 4534186 37 100.0 37 ACGCGCCATC ..................................... TTGAGCGCGGGCTCGCGTCTACCGCGTCAGCCGCCTC 4534260 37 100.0 35 CAGCCGCCTC ..................................... CACGCAGCGTGACGGTGGCGATCTGGTGGCGCTGC 4534332 37 100.0 38 GTGGCGCTGC ..................................... TAACCATGGCGACCAGCAGCACGATGGCGTACATGGCG 4534407 37 100.0 37 GTACATGGCG ..................................... CTGAGACTACTTGTCGCTGGCGGCGGCCTCGAACTGG 4534481 37 100.0 38 CTCGAACTGG ..................................... TAACCATGGCGACCAGCAGCACGATGGCGTACATGGCG 4534556 37 100.0 38 GTACATGGCG ..................................... CTTACCAGCCAGCATGTAGAACAGCTTGGCCGGCACCT 4534631 37 100.0 36 GCCGGCACCT ..................................... TTGATGGCGTACTTGACGAGCTTCTTGGTGTTCCAG 4534704 37 100.0 37 GGTGTTCCAG ..................................... AAGCAGTCCAGGTCGATGGTCTTGGGCGCGGCGTTGG 4534778 37 100.0 36 GCGGCGTTGG ..................................... GCGTGTCGCCGCCGCAGACCAGGTTGACGATCACCG 4534851 37 100.0 36 ACGATCACCG ..................................... TCGCTGGACGTCACCGTGAAGCAGGATCATCGGCTT 4534924 37 100.0 37 TCATCGGCTT ..................................... CGTTGAAGGTCTTGATCTCCTCGCCGTTGGCGAACAC 4534998 37 100.0 39 TGGCGAACAC ..................................... GTGCCATCGAACTCTTCCTCCGACTCCGACGCTTGTCGA 4535074 37 100.0 37 CGCTTGTCGA ..................................... CCCCCATCGCGCGCAGGTCATCAGTGACGCTGTTGAG 4535148 37 100.0 37 CGCTGTTGAG ..................................... CCACGCAACCTCGCCATTCACCATCCACCCCGTATAG 4535222 37 97.3 36 CCCCGTATAG ..................T.................. GGAACCTAGGCGGCCTCGACAATCGCGTTGCGGCGG 4535295 37 100.0 38 GTTGCGGCGG ..................................... ATCGATGCCGAAAGGCCTGCCGTTGGGCAGGCCTTTTC 4535370 37 100.0 36 AGGCCTTTTC ..................................... GCCAGAACCAGCATCACACCCAGCGGCATGAGCAGG 4535443 37 100.0 36 CATGAGCAGG ..................................... GCGACCTCGGCGTAGACCGGGGCGGCGGAGAGCGAC 4535516 37 100.0 37 GGAGAGCGAC ..................................... ACGAGGGCCGTGCCGATCTGCTGGAGCCGGAGGTCGA 4535590 37 100.0 37 CGGAGGTCGA ..................................... ACAGCCCCACGAACGCGCCAATGAACTGCGGGCAACT 4535664 37 100.0 38 GCGGGCAACT ..................................... GTCCTTGGGGCATAAGCCTCCGTGGACGCGGGTGAACC 4535739 37 100.0 37 CGGGTGAACC ..................................... TTTTCTTGATCACGTCCCAGACGTCGCCGGGCATGGT 4535813 37 100.0 39 CGGGCATGGT ..................................... ACGTTCTCCTTGTCTCTAGCCTTGAAGGCTTTCAAACGG 4535889 37 100.0 37 TTTCAAACGG ..................................... ACTTACGGATACCTATGGATAACAAACGAACGGCGAG 4535963 37 100.0 36 GAACGGCGAG ..................................... CTCAAAGTGGCTGATGATGTGCGCGCGGTGATGGGC 4536036 37 100.0 40 GGTGATGGGC ..................................... TGGCGGCGATCTTGTCGCAAGAGTACCGCACTAGCGTACC 4536113 37 100.0 35 CTAGCGTACC ..................................... GCAGGTGCAGTTTGCGCTTGATGTTACGATCAGTG 4536185 37 100.0 39 ACGATCAGTG ..................................... CCAGGTAGCGGCAATTCCGGCGTACGACGGTGCAGCCGG 4536261 37 100.0 36 GTGCAGCCGG ..................................... ACGACCGACGACGGACGCGGAACTAGGCGGCCTCGA 4536334 37 100.0 37 GCGGCCTCGA ..................................... CTGCGGCTGCGGCGCTGCCCACAGACGTCGTCCCCCG 4536408 37 100.0 36 TCGTCCCCCG ..................................... CTTGTCGAGCTCAATGAAGAGGCGGGGCAGGGAAGA 4536481 37 100.0 37 GCAGGGAAGA ..................................... ATCGAGGTTGAGCACCGTGGGCAGCTCGCGCTCGAGG 4536555 37 100.0 39 GCGCTCGAGG ..................................... CCTATAGGAGGCTTGCCGACGTCCAGTACACCGGGGCCG 4536631 37 100.0 36 ACCGGGGCCG ..................................... AGCGGTCTTTGCTCCTTATCGATGATAACACACGAG 4536704 37 100.0 36 AACACACGAG ..................................... TCGGCGGCGAAACAGATAGTCCGCAGCCAGATAAAT 4536777 37 100.0 37 CCAGATAAAT ..................................... CGAAGATGCGGAACTGCGCGGCGAGAAGCACCACGGT 4536851 37 100.0 38 GCACCACGGT ..................................... TCGGTGGCGGTGAAGTTGTTCAGCACCCAGTTGGCTGC 4536926 37 100.0 37 AGTTGGCTGC ..................................... CGAGAGAATGCCGTAGTTCTCGGCGTCTCTCGAGAAG 4537000 37 100.0 36 TCTCGAGAAG ..................................... CTCTCGTATCGCAGTGAATCCCAAAGGGAGAGACGA 4537073 37 100.0 36 GGAGAGACGA ..................................... GTTTGGTTCCATCAGAACTACGAACCGGACTTCCGG 4537146 37 100.0 39 GGACTTCCGG ..................................... CCCGACGTTGTAGTGCATGGGAAGGAAGTGGTGACGGAA 4537222 37 100.0 36 GGTGACGGAA ..................................... AAAAGACGATGGACGGAGGACGCGGACGTGGCTAGC 4537295 37 100.0 38 CGTGGCTAGC ..................................... TCCTGTCACTGAGGGGGTTTAAACAAACCCCCGCGGAT 4537370 37 100.0 37 CCCCGCGGAT ..................................... CTGACGATGCTCATAACCGAGACCTCCACGGGAGACT 4537444 37 100.0 37 ACGGGAGACT ..................................... GACGCCACGGGCGACGACTTGTTGTCACACGCCGCTT 4537518 37 100.0 38 CACGCCGCTT ..................................... GCGTTGCCGAGCACGTCGGCCATCACGCCCTTCATAAA 4537593 37 100.0 35 CCTTCATAAA ..................................... CACGCAGCGTGACGGTGGCGATCTGGTGGCGCTGC 4537665 37 100.0 38 GTGGCGCTGC ..................................... ATGATTCATGCGCGCACCGTGTCTCGCCGTTGCGAGGG 4537740 37 100.0 37 GTTGCGAGGG ..................................... ACCGTCTTGCGAACTCGCCGCATCCTTGGAAGGATGC 4537814 37 100.0 36 GGAAGGATGC ..................................... TCGAAAGGCATCATCTCGCCAAACCCCGCGACCCCC 4537887 37 100.0 36 CGCGACCCCC ..................................... TTTATTGTCCAATCGCGTGCGCGTGCGTGTGCTAGA 4537960 37 100.0 38 GTGTGCTAGA ..................................... CCTCAACGGTGGGGCGATCCAGGATGCCGAAGTCGCCG 4538035 37 100.0 37 GAAGTCGCCG ..................................... TAAGGAGTGCCTATGCCCCAAAACTAGCGTTTGGCAA 4538109 37 100.0 37 CGTTTGGCAA ..................................... CCGTTACGTGCGTGCGATGGCCTCGCCACGCTACTTA 4538183 37 100.0 39 ACGCTACTTA ..................................... GCCCGTGACCTCGTACTTCTCTACCATCGCCGGGATCTC 4538259 37 100.0 38 CCGGGATCTC ..................................... CCACGACGCTACCGGGGTAGCCGTCGCGGTCGCCGTTG 4538334 37 100.0 37 GTCGCCGTTG ..................................... GGGTCCGCCTTTCTTTTTTCTTATTCTTTTCTGCCTC 4538408 37 100.0 37 TTTCTGCCTC ..................................... TCCGCCTCATCGTAGAAGCCGAACGTCCTGATGTCGT 4538482 37 100.0 39 CTGATGTCGT ..................................... TTCTCGCCGTCCGCGTAGACGTACACCGTGCCGGCGTGC 4538558 37 100.0 36 GCCGGCGTGC ..................................... AAGCACTCGGGGCACGTGTCGGAGTTCGACACGTCG 4538631 37 100.0 37 CGACACGTCG ..................................... ACGACGGACGTGGCTAGAAGGTCTTGGCGAGCGAGGC 4538705 37 100.0 39 CGAGCGAGGC ..................................... ATCCCGGAGGATGTGGGTGAACCTACTGCCGGACACAAC 4538781 37 100.0 38 CGGACACAAC ..................................... AATGATCAGGACAACCCCGAGAAGCTGGGCGGCGCCAT 4538856 37 100.0 38 GCGGCGCCAT ..................................... CTGCGGAGCATCGTTTACGGCGTGGACTACCCGGGTAT 4538931 37 100.0 37 ACCCGGGTAT ..................................... ACGACGGACGTGGCTAGAAGGTCTTGGCGAGCGAGGC 4539005 37 100.0 39 CGAGCGAGGC ..................................... ATCCCGGAGGATGTGGGTGAACCTACTGCCGGACACAAC 4539081 37 100.0 36 CGGACACAAC ..................................... ACGACAAAGAGCAAGAGCGTGATCAGCGTCGCGATC 4539154 37 100.0 36 CGTCGCGATC ..................................... ACGACCGGGGCCGCGGTGGGCTCGGCCGCGGCGGAC 4539227 37 100.0 37 CGCGGCGGAC ..................................... TTGCCGTCGCTGTCGTTGTCGTAGAACCAGAGGCCGA 4539301 37 100.0 38 CAGAGGCCGA ..................................... ATGCCGAGGAGCAGAGCCCCCGCCACCACGACCGAGAT 4539376 37 100.0 38 CGACCGAGAT ..................................... AGCAGCTACTTCTGGTCGCAGCCGCCCATCGTCTCGTT 4539451 37 100.0 38 TCGTCTCGTT ..................................... GCGAAGTCCTGGCCCCTGCGGTCGTACTCGCTGACGAG 4539526 37 100.0 CGCTGACGAG ..................................... CTCATCATCT ========== ====== ====== ====== ========== ===================================== 78 37 37 CAGCAGAGCATTGCCCCGCAATGAAGGGGTTTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [11,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-9.30,-7.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [164,705] Score: 0.18/0.18 # # Final direction: F [1.01,0.59 Confidence: LOW] >NC_010175 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 709528 36 100.0 63 NNNNNNNNNN ...........G..A......G....G......... TTGTCTTGAGAATTGGTGGCTGACACTGCCGTTCTGTTTCGTGTTTCAATCCCCTCGCGGGAG 709627 36 100.0 42 NNNNNNNNNN .................................... TCCGCAGACTGACGAGGAATGCGCAGCTGCGGCGTTGGCCAG 709705 36 100.0 45 NNNNNNNNNN .................................... AGAAAGGAGTACACCAATGGCAACCTGGATCAAGACCGACATCGG 709786 36 100.0 44 NNNNNNNNNN .................................... GCAAACCTTGCGGAGTGGATCACTCAGATCACGACTGCACTGTG 709866 36 100.0 41 NNNNNNNNNN .................................... GAAGAGAAGGAGGAGGTGTTCAAGTTTCGCTTTCTAATAGG 709943 36 100.0 41 NNNNNNNNNN .................................... CCTGGCCGGCCAGCGGATCGGTGAACTCCCAGGCCAAAGAG 710020 36 100.0 42 NNNNNNNNNN .................................... AGACTGGCAAGACTACGCGCTGTTTCGATATTGGTTTTTAAG 710098 36 100.0 40 NNNNNNNNNN .................................... ACGATATTGCGCCGCCCGATAAATTGCTCCCGCGTTGATG 710174 36 100.0 42 NNNNNNNNNN .................................... ACATAGGCGGCGTTGGCGTCAAGAATCAGATTGATCGCTTTG 710252 36 100.0 41 NNNNNNNNNN .................................... GCGTCTACCAAGATTGGCATATAATCCAGTTCCTCGATCGG 710329 36 100.0 42 NNNNNNNNNN .................................... TCAGTGCCGACGGCGCAGTTTGGGAACTCGTAGTATTTTCGG 710407 36 100.0 39 NNNNNNNNNN .................................... AAACGTACTATCGCCTTGGGGTCTGGCTCTGGCGATAAG 710482 36 100.0 45 NNNNNNNNNN .................................... CAAGAATTAGTGGCGCCAATCGCGAATAGTTGGCACACAGCGTCG 710563 36 100.0 41 NNNNNNNNNN .................................... TTCTGAAAACGGCAGAAGCAATCCTGCGACGTAAATATGGG 710640 36 100.0 40 NNNNNNNNNN .................................... TTAGAACGCGCTGTCTTTTGCGGTGGAAGCGAACTTCTGG 710716 36 100.0 42 NNNNNNNNNN .................................... AGACCACCCAACCCGCGCAGAGGAACGTCGGCAATTTGGATG 710794 36 100.0 46 NNNNNNNNNN .................................... CAGAAATTACTCGTTTGATGGAGGCCGGCGCGGCAGAATATATGAG 710876 36 100.0 38 NNNNNNNNNN .................................... GTTACGGAGTACGAGAATGTCAATCAAGTTTTTCCGGG 710950 36 100.0 42 NNNNNNNNNN .................................... GGACGGACGGTGGCGGGTCGTCACGTCGGGGGTTCGCCTTGG 711028 36 100.0 42 NNNNNNNNNN ...................G................ GTAGGGGTCGGTGCCGGTATTACGGTTGACCAGCTCGATCCG 711106 36 100.0 45 NNNNNNNNNN .................................... CAGAACGTCAGTTTTGACCTCAAACACCTCGCGCATCACTTTCCG 711187 36 100.0 41 NNNNNNNNNN .................................... ACGACCTTCTATCCGCGCTGGACATCAGCGACAATGTTCAG 711264 36 100.0 45 NNNNNNNNNN .................................... TCACGGTTAACGGACGCCAGTACCTGATTCCGGTCACCCCTCCGG 711345 36 100.0 43 NNNNNNNNNN .................................... CGGCAGAGGTTTTGCTCCGCAAGCGGTTCGGTTGTTTACTCGG 711424 36 100.0 45 NNNNNNNNNN .................................... AGTTGGCCAGTTTCTCAGATCACCGTTTGGCCAGCCGCTGCTAGG 711505 36 100.0 41 NNNNNNNNNN .................................... GTAGGTATGGTATTGTTGCGAAAAGCCGCAAACCGGCTCGG 711582 36 100.0 41 NNNNNNNNNN .................................... TTGGAAGATTGAACAGCGAAAAACAGACTTACGTAAACGAG 711659 36 100.0 39 NNNNNNNNNN .................................... GCAATCGGCGCACCAGGCCGGCTTGACCGGCGGCGTCAG 711734 36 100.0 41 NNNNNNNNNN .................................... CCGTTGTCCGCCGCGCCGGAAGCGGCGGCGGGATCGGCGGG 711811 36 100.0 42 NNNNNNNNNN .................................... CACGAGCGCTACATTCTGCGTCTGATCCACCACGATCCCGGG 711889 36 100.0 42 NNNNNNNNNN .................................... GAATCAAACCCTTTCGCGTCATGAGCGCCATGGCTCGTCGCG 711967 36 100.0 38 NNNNNNNNNN .................................... GTTGTTGCGTAGTGTTGGGAGTAGCATTCTTAACTACG 712041 36 100.0 42 NNNNNNNNNN .................................... CGGTCGTTGATGTCGACCACCAACGTCAGGGGCGATCATGGG 712119 36 100.0 39 NNNNNNNNNN .................................... CCGGATCGCGCCCCACTCTTGGGGAAAACAAACTATATG 712194 36 100.0 42 NNNNNNNNNN .................................... GGTTCCAATGTCGTGTGAACACGCCGTCTTTGCAAGCATGGG 712272 36 100.0 42 NNNNNNNNNN .................................... GTGCACGGCGGGGGTGGCGACCGCTCTCGCCAGTGCTGTGGG 712350 36 100.0 41 NNNNNNNNNN ..................AT...G.T.....GA.GT CCGACAAAGCTGTGCGGCAGGCGGTGGTCGGAGTATTGGCG 712427 36 100.0 42 NNNNNNNNNN .................................... GTCACGAGTTACTGTCGACGAAGACGTACCAGACATCTTCGG 712505 36 100.0 41 NNNNNNNNNN .................................... TGCATGGTTGGCACGCCACATTACAAGTCTTGCGCATTATG 712582 36 100.0 38 NNNNNNNNNN .................................... CTGCTTCGCGCGCCCATGGCGCCTCGTCATCGCGTATG 712656 36 100.0 42 NNNNNNNNNN .................................... AGAAAGACCGGTAACCCGCTTGCCTTGTTCGACATTTTTGAG 712734 36 100.0 38 NNNNNNNNNN .................................... GAATCGCGGAATCGGTTTTTCTGTCGCGCAATGCTCGG 712808 36 100.0 38 NNNNNNNNNN .................................... CAACCACCGCGCGGCTCGGGGAAATCAATCGCGTTGCG 712882 36 100.0 40 NNNNNNNNNN .................................... AGACGAGGAATTGTCAGCGCTGGCCGCGCTGATCGCTGCG 712958 36 100.0 41 NNNNNNNNNN .................................... TCACTGTCGCGATGGCAGCACTGAGCTGGCGCTTCGATCTG 713035 36 100.0 40 NNNNNNNNNN .................................... TCGTTGCCGTTCCAGCTACCTAATCCGTTTGCACCGTCGG 713111 36 100.0 43 NNNNNNNNNN .................................... CGCTTGGGTGATGAGTGGGTAACGCGGCAGGACGTGGGAGAAG 713190 36 100.0 40 NNNNNNNNNN .................................... TTATGCAACTCAAGCAATTCCCCGCATTGCGGGAATTGCG 713266 36 100.0 41 NNNNNNNNNN .................................... GTACCCGCACCTGCCAGTAAAGAGTAAGTACCGCCGTCATG 713343 36 100.0 44 NNNNNNNNNN .................................... TTGCGCTTGCAGTGGCGGAAGAGTTGGTCGAGGAACGTTGCTGG 713423 36 100.0 43 NNNNNNNNNN .................................... AAACACAGACGAGGCGGCGGTCGCGTTTTTCCGACCGTTCTTG 713502 36 100.0 41 NNNNNNNNNN ....G............................... AAAAGGAGGAGCGGGAGGCACTGACGGCCTTGCAAGCCGCG 713579 36 100.0 42 NNNNNNNNNN .................................... TCTGGGCCGGCAAGCCGTCGAAGGTACGGCTGCCGGAAGGTG 713657 36 100.0 42 NNNNNNNNNN .................................... AGTATAGACGTAAGAAGCAATCAAACAAAAAAAGGAGTTAAG 713735 36 100.0 45 NNNNNNNNNN .................................... CCATCCCGATACCGTCAGAGCCGGCGGCTGAATAACAGCAGGTGG 713816 36 100.0 42 NNNNNNNNNN .................................... CGGGTTGGCAACCGTTCCGCCGCTCGGGCACACTCGCAGAGG 713894 36 100.0 41 NNNNNNNNNN .................................... TTGGCGAAACATTTGTCGTTGGTCATTTGTCACAATTTCAG 713971 36 100.0 45 NNNNNNNNNN .................................... GTGGATGCTGCGAAGCACATTCGTGGTTGGATGAAGCATAAGTTG 714052 36 100.0 40 NNNNNNNNNN .................................... ATAATTTTCACCTGTGTATCAAAATCAACCCGCTTTAACG 714128 36 100.0 38 NNNNNNNNNN .................................... CGGGAGAAGTATCGCGAATGAGGAACCGAAATATTTAG 714202 36 100.0 41 NNNNNNNNNN .................................... CCAGATTATCCAGACTAGCGAGGGCTTGATTGTCATTCACG 714279 36 100.0 45 NNNNNNNNNN .................................... GCCGATCTGCTCACGCATCACCAGATGCGCCGCAGTGCCGCTTGG 714360 36 100.0 41 NNNNNNNNNN .................................... GAGGAAAAAATGTACCTTGTTAACCTGTACGGCGATTTTAG 714437 36 100.0 46 NNNNNNNNNN .................................... TTGCAACAATATCTCATTCCGGCGGTTGCGCTGTTGCACCAACCGG 714519 36 100.0 42 NNNNNNNNNN .................................... TTAATTGGTCCCGGTGGACGAATGAAGACGACTCCGGATTTG 714597 36 100.0 43 NNNNNNNNNN .................................... AGATTGTCTGCGCGGAAGAAGGCAGCGAACAAGATCAGATTTG 714676 36 100.0 42 NNNNNNNNNN .................................... TGAATTACCGTTACGTCTCTATCATACTACGCTATTTGCGGG 714754 36 100.0 42 NNNNNNNNNN .................................... GTCACGTATTGCGCATCTGCATTTGGTATGACCGTCACCGAG 714832 36 100.0 42 NNNNNNNNNN .................................... CGATTACGGCGGTGGCGGCGAATGATCGCGGCATTGTTGACG 714910 36 100.0 43 NNNNNNNNNN .................................... TAATAGTAGTCGCCGGTCGGCGTAATGACGCGCAGATAGTAAG 714989 36 100.0 43 NNNNNNNNNN .................................... ACAATTAGCAGAGGCGCGAAAACAACAAACGGAAGTAGTTACG 715068 36 100.0 41 NNNNNNNNNN .................................... CGCTAATATTGGAAAATACAATAATCGCGATATAGAGCAGG 715145 36 100.0 45 NNNNNNNNNN .................................... AAGTTGTCGGGTTGGGCAACGATCCTGACAACCTTCGCTTTTCGG 715226 36 100.0 47 NNNNNNNNNN .................................... CCAAGAATAAGATTGTTCGTGTACGCCGGCAATTGCATATATGCAAG 715309 36 100.0 43 NNNNNNNNNN .................................... GAATAACCGGTGTTTTTCCTAGAAAAAAAGCCCTGACATTTTG 715388 36 100.0 40 NNNNNNNNNN .................................... GCAAGCAGAAGCTGAGCGAATGGCGCGATTGCAAGCAGAG 715464 36 100.0 43 NNNNNNNNNN .................................... CGAAGTTCTTGCGCAACAACGCCCGATTCATCTGTTGGGCGGG 715543 36 100.0 43 NNNNNNNNNN .................................... CGGTGTTCTCTCCGTGCATCCAGGTCCAGTTGACAACGTGGAG 715622 36 100.0 45 NNNNNNNNNN .................................... TCGCGCAATCGGGAAATGCCAGCCGGCGACTGCACAGGTTTTGAG 715703 36 100.0 42 NNNNNNNNNN .................................... ACCCATTTATTGTGGCCCTCACGGACCACCCAGATGAACTCG 715781 36 100.0 42 NNNNNNNNNN .................................... ATACGCGCTTACTCATCAATTCGAGTTGTTGATATAACTCTG 715859 36 100.0 42 NNNNNNNNNN .................................... GTGCTGCAAAGAAGCGCGATAAGGATAAAAAGATAAATAATG 715937 36 100.0 43 NNNNNNNNNN .................................... GGCGAAAATGCGTGGGATGATATGGCGCGTCTCTGTCGTGCCG 716016 36 100.0 39 NNNNNNNNNN .................................... CCTTTACCGACGATCATTACCAAAACCCGTTGGCGTCTG 716091 36 100.0 40 NNNNNNNNNN .................................... CCGCACTGACGGCAACGGCAAGCGCGCAGTTACTTTCATG 716167 36 100.0 41 NNNNNNNNNN .................................... GCCCGTTCGCAACCAGGAAGGAGGCGATTGCGGACGCAATG 716244 36 100.0 42 NNNNNNNNNN .................................... CGAGTACCACATTGTCGGGGATGAGACCCGCGCGAGGGTTGG 716322 36 100.0 41 NNNNNNNNNN .................................... CGCAGTAATCTGTGCTTCAACGATCTTTAGCTGATCCTTTG 716399 36 100.0 43 NNNNNNNNNN .................................... AAACCAAATGACCGGCGGCTTCAACACTTACCGTATTGGCCAG 716478 36 100.0 40 NNNNNNNNNN .................................... TGGATTACAACCGCTGGCTGGCGGCGGTGTGGGCCGTTCG 716554 36 100.0 43 NNNNNNNNNN .................................... GTAGACGAGGCCGATGACGGCGACTGGCTGTTGTATCTTTCGG 716633 36 100.0 45 NNNNNNNNNN .................................... TTGGTGGATCAGCGCAATATTAAGCGTTCGCCGCTCATTTACCGG 716714 36 100.0 43 NNNNNNNNNN .................................... CTATAGCATAGGAGGCGATCTATGGCAACACGCGAAGAGTGGG 716793 36 100.0 43 NNNNNNNNNN .................................... CAACGCGAATGCCGACGGTGGCGAGAATGGCGGATAGTGTTCG 716872 36 100.0 40 NNNNNNNNNN .................................... CCGTCTCGACGGTGAACGACCACTCCTGAATACCGTTGAG 716948 36 100.0 43 NNNNNNNNNN .................................... CGAAGAGGTGTTGAAAGCGGCGGGGATTGAGGTTCAATTTAGG 717027 36 100.0 42 NNNNNNNNNN .................................... CAATAAGATAATGGATGCTGACGCGCGAAGCGGGATTGGTCG 717105 36 100.0 43 NNNNNNNNNN .................................... CCACGTCACAGCGACAGATCGTGACATCGACGGTATCGGTGCG 717184 36 100.0 41 NNNNNNNNNN .................................... CGACAGCCGGCGCGGTTGGCATCGCGGCAGCGCTTGTTGTG 717261 36 100.0 41 NNNNNNNNNN .................................... GGATAAATGCGTATTTTAGATAACAATCCAGCGCTGTTTGG 717338 36 100.0 43 NNNNNNNNNN .................................... GTGACTTTGAGGCCGGCTTACTTCGGTTTCGCGCCGTCGCCGG 717417 36 100.0 42 NNNNNNNNNN .................................... CAGACGCGCCATCGCCCCCGCCGAGCGCGCCGAGCGTAGAGG 717495 36 100.0 39 NNNNNNNNNN .................................... GAAGCAAACGCAGGTCGAGCAAGGCACGCAGGTTGAGAG 717570 36 100.0 44 NNNNNNNNNN .................................... CGGGGAGTGGGTCGAACTCCCCGGTGAATGGTGGCGGTTTGAGG 717650 36 100.0 42 NNNNNNNNNN .................................... ACGTGGCCGGAAACCATCCGCCGCGTTATTCTCGGCGCGCAG 717728 36 100.0 42 NNNNNNNNNN .................................... GTACCGACGTAAGTTATCTACGTCCATGGCCCACGTGTAATG 717806 36 100.0 42 NNNNNNNNNN .................................... CACACAACCAACAACGCAGAAAGGTGGGGAATGGTAGTGCGG 717884 36 100.0 40 NNNNNNNNNN .................................... GCCAGCACTTTTTGCCGACCTTGAAAGCTTGGCAGGTACG 717960 36 100.0 41 NNNNNNNNNN .................................... CTGGCCAACGTCCGCAACGCAGCCCGACAACGGCGATAGTG 718037 36 100.0 46 NNNNNNNNNN .................................... TCAGACAGTGTGCGCACTGTTGACAAAAAATTGCTCGAAAATTGCG 718119 36 100.0 43 NNNNNNNNNN .................................... GGCGAAAATGCGTGGGATGATATGGCGCGTCTCTGTCGTGCCG 718198 36 100.0 39 NNNNNNNNNN .................................... CCTTTACCGACGATCATTACCAAAACCCGTTGGCGTCTG 718273 36 100.0 40 NNNNNNNNNN .................................... CCGCACTGACGGCAACGGCAAGCGCGCAGTTACTTTCATG 718349 36 100.0 45 NNNNNNNNNN .................................... TTTTCGAGTTGAGGACGACACCGAATAAATAGATAAAAATACAAG 718430 36 100.0 43 NNNNNNNNNN .................................... ATGATGTGAGCAACGAAGGAAATCCAGCAAAGAAAGGAAGGAG 718509 36 100.0 43 NNNNNNNNNN .................................... AACAAGAAAGGAGTTAACTATGAAGAAGATCAACTGGTACGTG 718588 36 100.0 42 NNNNNNNNNN .................................... TAGCACAAATTGATCGGTTTCGGTGACAACGTTTCTGACGAG 718666 36 100.0 46 NNNNNNNNNN .................................... GCTAAAGGGGGGGACTTACGTATGGGTTTTTCGAGAAGGCCCCCGG 718748 36 100.0 42 NNNNNNNNNN .................................... TCGACGGTTTCTCGCCGCGCTGCGTTGTCGCGTATTGCAACG 718826 36 100.0 46 NNNNNNNNNN .................................... TGGTTTAAACAGTTAGGCGCGAAAAGCACGGGACGGTTTAGTAGTG 718908 36 100.0 46 NNNNNNNNNN .................................... ACAACGCAGCGTTTTCATTGCGCAGTTTGTGCAGCGCACTGCGTAG 718990 36 100.0 43 NNNNNNNNNN .................................... GCCAAACCAGTAACCAAACAAGAAAGGAGAACAGAAATGTACG 719069 36 100.0 45 NNNNNNNNNN .................................... GCGGCGCAAATGCACTTTGTAATTAGGCAACTCGAATACGTAGTG 719150 36 100.0 41 NNNNNNNNNN .................................... CAATAAAGAGCATGGTATCGTCAGGCGCGCCGTGCTCAACG 719227 36 100.0 39 NNNNNNNNNN .................................... ATCCTGTTCGCGGTCTGGCGCAAACAGATGGAGATCGCG 719302 36 100.0 43 NNNNNNNNNN .................................... GCCGTATGCGTCGATAACCGATGCAAACAGTAGTAATTCCCCG 719381 36 100.0 44 NNNNNNNNNN .................................... TGGTATTGACAACGTGACACGAGTATGCTATAGTATAGTCAACG 719461 36 100.0 44 NNNNNNNNNN .................................... ACACCGGAACCCACTGTTTTGTTTCCGGGTCTTGCGCGATCCAG 719541 36 100.0 45 NNNNNNNNNN .................................... ACGCTACAAGCAGTGTCTACAGTACATACCGCGCTGTCCACAACG 719622 36 100.0 44 NNNNNNNNNN .................................... ATAGGTGGACGGCGCCGGTGGGTGGACGGCGGATATTATGTGGG 719702 36 100.0 44 NNNNNNNNNN .................................... TGACCCAACCCGCGCTGGCTTTCGCCTCCAGCGCCTTAATCGCG 719782 36 100.0 43 NNNNNNNNNN .................................... CTGGCGTTTCGATTGATATTGAGGGGTTTGCGTTGTTCGGAAG 719861 36 100.0 40 NNNNNNNNNN .................................... ACGAGGGAAGGAAACGAAGCGAATGTTTCGAGCATGTTAG 719937 36 100.0 46 NNNNNNNNNN .................................... CGCCCGGCTCGGCGAGCGTCCATGGATCGGCAGGCATAGCAGGAGG 720019 36 100.0 43 NNNNNNNNNN .................................... GGAATACTTCATGGCGTATGAGGGGAGGTAGCATGAATTACAG 720098 36 100.0 46 NNNNNNNNNN .................................... TTACTGTCGCCGTCGACAGCGACGGCGATATCTACGAAATCGCGCG 720180 36 100.0 40 NNNNNNNNNN .................................... CAACTTACATGGGCATGCTCGAGCCGCCAGCTTTATGGCG 720256 36 100.0 42 NNNNNNNNNN .................................... ACACAGTTGCCGGTGTCGTTCGGCTCATTTTTGAAACTTGGG 720334 36 100.0 43 NNNNNNNNNN .................................... GTACCTGCTCGTGCTTTGGGGCGTGACAGGGTTGCTTGCTGCG 720413 36 100.0 42 NNNNNNNNNN .................................... ACCAATTGCGTCGATCCGGCTCACGACTGTGAAACCATCCGG 720491 36 100.0 40 NNNNNNNNNN .................................... GGAAAACGCGGGAGTGATCCCGCGACGAGTAACATCGTTG 720567 36 100.0 45 NNNNNNNNNN .................................... CGACATGGCGTGGCGAGTAGCTATCAGCATTCATGCAACGTTAGG 720648 36 100.0 40 NNNNNNNNNN .................................... GTAGGGTATCGCTGGGGGAGACCGCAGCACATCGTTGACG 720724 36 100.0 42 NNNNNNNNNN .................................... GCGACAATTGACACCGACGGAACGGAGCGCGGTTGCCGAAAG 720802 36 100.0 42 NNNNNNNNNN .................................... CTGCTTCATCCGCTTTTCCTTCCGCCTCCGCTTCCGCTATCG 720880 36 100.0 40 NNNNNNNNNN .................................... TCACGCAAATAGTCGCTCGGCGACACGCTGAAACGCCGGG 720956 36 100.0 41 NNNNNNNNNN .................................... TTCGCAGCAATTGCGTCAATCAGGTCGTCACGCAAATCGCG 721033 36 100.0 44 NNNNNNNNNN .................................... CATCTGCTCAGCGCAGTTCAGCATACTGCGCAGCAGCGAGCAGG 721113 36 100.0 41 NNNNNNNNNN .................................... TTACATTGGGTACCAACAGAGGCCTTTTTGCCGTGGCTACG 721190 36 100.0 45 NNNNNNNNNN .................................... CCCCAGGGGTGGGACTATGTGTACGTCGGGACCCCTCTTATGAGG 721271 36 100.0 41 NNNNNNNNNN .................................... TCGCTTGTTCACGCTGTGCGCGAGCAAGAAGGGTCTTTGTG 721348 36 100.0 44 NNNNNNNNNN .................................... AACATACACAACGAAAGGGGGACAGTATGTCGTACTTTGAACTG 721428 36 100.0 46 NNNNNNNNNN .................................... CCACACCACCACCACCAACTTGTCAACACCCTTACAACAAACAAAG 721510 36 100.0 43 NNNNNNNNNN .................................... CTGATCGCGTGGTCGAGCGATGGCGCAAGGCGTCGATCTCGAG 721589 36 100.0 44 NNNNNNNNNN .................................... CGATCCGCATTACGCAGATCGAACATGCGTTTGCGTCCTAACGG 721669 36 100.0 39 NNNNNNNNNN .................................... ACCCTGAACCACACTACCGACCCCTTCTCTACGACACGG 721744 36 100.0 44 NNNNNNNNNN .................................... CGATGTGATGATCGCGTTCGGGAAGGTGTAGGTGGTCGTACCGG 721824 36 100.0 44 NNNNNNNNNN .................................... CCAAACACATCAAAAATTGCCTCCGTTGTCATAAAAACATTGTG 721904 36 100.0 40 NNNNNNNNNN .................................... TTCCATACAATAAGAAGTAACGCGAACGCAGGAATGATGG 721980 36 100.0 41 NNNNNNNNNN .................................... TCACGAGGCGCTGGCGCTGGCCAATGCGCTGGCGCAGACGG 722057 36 100.0 41 NNNNNNNNNN .................................... CTGTGAAATAGTTTTCCCTGAAACAAATTGCAAGAGATGGG 722134 36 100.0 44 NNNNNNNNNN .................................... GGAGGAAGGATCGCAGTGGCACAAAGAAATCGAACAGGGCTGGG 722214 36 100.0 41 NNNNNNNNNN .................................... ACACAATGTCAAGCGCCCACGCGACGCGCTGCTCGCTGACG 722291 36 100.0 40 NNNNNNNNNN .................................... AAACTTAGCGGTAGTTGGCGATCGCGTCCGCGATCGCTTG 722367 36 100.0 39 NNNNNNNNNN .................................... CAGCATTTCCATCATCTCTCACCTGCCTGCCGTTTTGGG 722442 36 100.0 42 NNNNNNNNNN .................................... GAAGAACACAAAGCGGAGCGAAGAATTGACACAGTTGTAGGG 722520 36 100.0 45 NNNNNNNNNN .................................... GAAAACTGTTCATATAGCGACGCTGTTAACTTAAAAGAGAAAGTG 722601 36 100.0 42 NNNNNNNNNN .................................... CGCCACTTAATGACACGCTTATCGGCGTACAACAGCGTTGCG 722679 36 100.0 45 NNNNNNNNNN .................................... GGCGTACACGCGCGTCGCCATCTGGTCGATCCCTTGTGTCACGGG 722760 36 100.0 42 NNNNNNNNNN .................................... GATAGATCGCAAAACGCGACGAGCAAGCGGTTCGGATAGCGG 722838 36 100.0 42 NNNNNNNNNN .................................... TGTGCCGGCAAGCGACGAAAAGGGACTGTATCTTGTTTCAAG 722916 36 100.0 43 NNNNNNNNNN .................................... GTTTCAGTACGACAAGATGGATATTGACACGTATATTTTGCGG 722995 36 100.0 42 NNNNNNNNNN .................................... TTCTTATCCGCCGTTGGCAGCGCGAATTACTTGCTGTTGACG 723073 36 100.0 38 NNNNNNNNNN .................................... TGCGCTACACGCTGTGCTGCGGTAAGCGGAGCATCAGG 723147 36 100.0 42 NNNNNNNNNN .................................... CGGGCGCAATTGCGCCCGGGAGTGTACGTGTGGGTGGTCCGG 723225 36 100.0 44 NNNNNNNNNN .................................... CGCGCTTGACGAAATGTTATCGCAGCAAATCGCTTACTGTTCGG 723305 36 100.0 42 NNNNNNNNNN .................................... ACAGAAGGGGTCGATGAAGATCAAGAGTAGTCGTGTTGTAGG 723383 36 100.0 37 NNNNNNNNNN .................................... GCACTTGTCTGCGCACTGATGTAACTCTCTCTAGTCT 723456 36 100.0 45 NNNNNNNNNN .................................... AAAAACGGGTTTGTAAGCGGCGCAAATGCACTTTGTAATTAGGCT 723537 36 100.0 39 NNNNNNNNNN .................................... GTAGACGTACATACCGCGCATGGTCGTATGGAGCAGACT 723612 36 100.0 45 NNNNNNNNNN .................................... GTGTGCGCCGTCAGCACGATCTGCCGAAATGCCGGCTCCGTCTCT 723693 36 100.0 43 NNNNNNNNNN .................................... CAAGCTAGGATCATACCTCGTCCGGGCTGCGCGTGAGGTAGCT 723772 36 100.0 45 NNNNNNNNNN .................................... AGAATTAGAACTAGCGAATGCAGAGGAGTTGTTCACGGATTAAAT 723853 36 100.0 45 NNNNNNNNNN .................................... GGATTAGCATTCTGTGGTGGCGTGGATCGGTTGCACGGCGTTGCT 723934 36 100.0 44 NNNNNNNNNN .................................... TGATTATCCGTATCCGGTGACTAAAATACCGGACCAACTCTCGT 724014 36 100.0 46 NNNNNNNNNN .................................... GCGCAATCTAAGCGCGCAATCTAAGCGCGCAATCCAAGCGCGCAAT 724096 36 100.0 43 NNNNNNNNNN .................................... TGTTAGACAAACCCACCGGATTGCAGGACTACGACGCGATCCT 724175 36 100.0 41 NNNNNNNNNN .................................... GCAGATAATAACGGTGAGGTTGAAGGATTTATCTTTCGGAT 724252 36 100.0 42 NNNNNNNNNN .................................... GACTTTGAACAACATTGTTTTCCTCCTTGTCGTTGCAGTTTT 724330 36 100.0 43 NNNNNNNNNN .................................... GAATGGTTGCCAGCCGGGCACGTACTTAATCATAGTGTACGTT 724409 36 100.0 39 NNNNNNNNNN .................................... GTAGAGGTTGCGTACACGCCGCAGCGCACGTATACCCCT 724484 36 100.0 43 NNNNNNNNNN .................................... AGCTACGTGCTAAAGGGTTACAGAGTTACCACGTGTGTATCGT 724563 36 100.0 41 NNNNNNNNNN .................................... CGGCAAGCAATACAGTTGCACAGCAAATTGTGCAAGCACAT 724640 36 100.0 40 NNNNNNNNNN .................................... GCAAGGCGGGTAAAGAGGTCGATGAGGCGCTGCATTCCGT 724716 36 100.0 43 NNNNNNNNNN .................................... CGACAAGGTATTTTTGGTCGGCCCTTTTCTTACTCAGAAAAGT 724795 36 100.0 41 NNNNNNNNNN .................................... TCAGATTGTGGCGCGAGTAAACACAGCGACAGACGGTGCGT 724872 36 100.0 42 NNNNNNNNNN .................................... GAGCAGGCGTGCGCCTGCTTCATCGAACGCAATTTTCGAAAT 724950 36 100.0 39 NNNNNNNNNN .................................... CCACTCGGGCTCCCTCGCGGAGTGCGTCGAGTGGGCGAT 725025 36 100.0 43 NNNNNNNNNN .................................... ATCAAGTCGCTAACAAGAGGAGGGAAAAACCATGTTTACGTTT 725104 36 100.0 41 NNNNNNNNNN .................................... TCATTGTGCATCCCCCGCCGTCAAGCCGTTGTGCCATTGCT 725181 36 100.0 42 NNNNNNNNNN .................................... CTCCTCTCTCTACCGCGTTGCTCGAGTCGCTCGACTGGCGCT 725259 36 100.0 42 NNNNNNNNNN .................................... TCGGATTGCATCGCTTACGCAAACAAGAGCCTGCATTTCCGT 725337 36 100.0 44 NNNNNNNNNN .................................... GGAATGGGTTGGTACGCGTGAAGGCACCCAACCCCATTCTACGT 725417 36 100.0 40 NNNNNNNNNN .................................... CGCAAAATGACACTAAGCATTGGAAAGCGGAGAAATGCAT 725493 36 100.0 40 NNNNNNNNNN .................................... TGACTGTCCAACACCGTTTCCAACCAAAAAGTACCCTCCT 725569 36 100.0 45 NNNNNNNNNN .................................... TCAACGACGGCAGCCGGCAGCAATGCGCCAAATTGGGGGGAGCGT 725650 36 100.0 42 NNNNNNNNNN .................................... GGAAGGTGCATTGGTCGTAGGCTGGTTAACCGCCTACGTGAT 725728 36 100.0 44 NNNNNNNNNN .................................... TTACATGTCCAAGATCGAACCCCCGGCCCTATGGCGGCTTGAGT 725808 36 100.0 46 NNNNNNNNNN .................................... CCAGCCGGCTGACGCAACAGCACTACAGCCGCGAGGGGCTGGTGTT 725890 36 100.0 44 NNNNNNNNNN .................................... AAAAGGGCCGTATCTCAGCAATGGTGATAATTCACAATATGAGT 725970 36 100.0 39 NNNNNNNNNN .................................... CGGCGCAGCGGCAGAAGGAACGGTTGCGCAAGCAACAAT 726045 36 100.0 44 NNNNNNNNNN .................................... CCTCAAGTAGCTGGTTAGCGTCGCCGGTGCGCTTAAACTCGTTT 726125 36 100.0 44 NNNNNNNNNN .................................... CTCCGCGCATTCCGCCCGCGCCGGATTGCGGAACACGTTGTGCT 726205 36 100.0 42 NNNNNNNNNN .................................... CGGATCGGGATGAGCATTAGCGGATGGATGCAATGTTTGCCT 726283 36 100.0 46 NNNNNNNNNN .................................... AGGTACTATGCAACCAACTATTACGTACAATCCACAAACGTATACT 726365 36 100.0 40 NNNNNNNNNN .................................... GCGTATTCACGCGAGCAACGTTCCAATTCGCCGGTTTGTT 726441 36 100.0 44 NNNNNNNNNN .................................... CTACCCTTTCCAACTATTGTACATAGCGCCCAAATACCGATACT 726521 36 100.0 43 NNNNNNNNNN .................................... GAAGAGGCTCGCTCGCTCGACGCCGAAGAAGCAATCGAGTGGT 726600 36 100.0 45 NNNNNNNNNN .................................... GTTGGCGATGCTGCTTTTACCACAAGTTCAAATGTGACCTATGAT 726681 36 100.0 39 NNNNNNNNNN .................................... CTCAGCACATCGTCAACGGGTAAACGACGTGTTTTTGAT 726756 36 100.0 42 NNNNNNNNNN .................................... CAAGCTTAGGAAGGACGCGCTGCACTTGTTGAATGTAATTGT 726834 36 100.0 41 NNNNNNNNNN .................................... GTACATCGCGTATGAGCGTTCCGTTCTTGGCTCGTAATTTT 726911 36 100.0 41 NNNNNNNNNN .................................... CGATAGAGCGAACAATGGTTTCGGCTAGCGCGCTCCGTCCT 726988 36 100.0 42 NNNNNNNNNN .................................... GTAGTCCGCCGAGGTGCGTGTCGAGGCGGCGAGGTCATAGCT 727066 36 100.0 41 NNNNNNNNNN .................................... CAACAATCTCTATCTTTATCATTACACCACAACCTGTTTGT 727143 36 100.0 43 NNNNNNNNNN .................................... GCCGACTTTAGCGTGTCGGAATGCCTCAATCATACGCGATGAT 727222 36 100.0 42 NNNNNNNNNN .................................... TTTGTACGTTATTTGATACGTCAATTTATGTTGATACGCTGT 727300 36 100.0 38 NNNNNNNNNN .................................... AGACAGGATGACTACTCGCAGGAGGGATGTTATGGAGT 727374 36 100.0 43 NNNNNNNNNN .................................... CCGGTACTTGCATTAGTTCGGGAATGACCAGCGCAATAATCAT 727453 36 100.0 43 NNNNNNNNNN .................................... GTACCGGATTGGGTAGTCGGTCACATCCGGCGTCTGCTGGAGT 727532 36 100.0 43 NNNNNNNNNN .................................... GGGGCAGCAACGAAGCTGCCTCTCAAATTTTTATTTTAGCGCT 727611 36 100.0 40 NNNNNNNNNN .................................... GTTGTAAAAAATTACCGCCGGCGCGTTTACTAATTTCACT 727687 36 100.0 44 NNNNNNNNNN .................................... ACCAGATCGCGCAGCGGATCGGCGCGGTGCTGGAGGCGTTCGGT 727767 36 100.0 43 NNNNNNNNNN .................................... GGCAAGATTGCGGGTCGTTAACCGGCGACCCGTCGGTGGCGGT 727846 36 100.0 42 NNNNNNNNNN .................................... GGGGCGCGGGTGGTGCTAAATAATACCGGTCTCTATACGTGT 727924 36 100.0 43 NNNNNNNNNN .................................... TGACGACATGCATGATGACGGCATAGATTGACATTACTCTTTT 728003 36 100.0 42 NNNNNNNNNN .................................... GTATCAGCCGGCCCGCCCTCGTGATGTTGCTCACTGCCTGGT 728081 36 100.0 41 NNNNNNNNNN .................................... CCGCTCCCCTTTGCATGCCTTGAGTTCGAGACATATGGAGT 728158 36 100.0 47 NNNNNNNNNN .................................... ATCGAGCAGTGCCGCCGCGAGTGCAGGGGTGTCGGCGTCAATGACGT 728241 36 100.0 44 NNNNNNNNNN .................................... CCGCCGGAAATTGATGTTCCCGTGATAGTCGCAGCATCAATCGT 728321 36 100.0 41 NNNNNNNNNN .................................... TACAGTGACTACGTATGTCACAAACGAAAGGAGGTGATACT 728398 36 100.0 41 NNNNNNNNNN .................................... ATAGTTTTGTCAAGACGCTCTCCGAAATGTATCGTGATGGT 728475 36 100.0 43 NNNNNNNNNN .................................... GAACCTGACCCCTGGGTGTGTGGTCTTCGCCTTCGTTGACCAT 728554 36 100.0 41 NNNNNNNNNN .................................... TTGATACTTCGACCCTACCTATTCCGCACATGCTGATCGAT 728631 36 100.0 44 NNNNNNNNNN .................................... CTAAGAAAGACGGCTGGGCAAAGGTGAAAGGGTTTTCCCTGGAT 728711 36 100.0 45 NNNNNNNNNN .................................... CTGCTGGATCAACCGGCAACGGCACGCAAGACGCTGCTAGTTGTT 728792 36 100.0 44 NNNNNNNNNN .................................... GTACGACAATGCGCTGCGGTGCAAACGACGCTGCGTTAGATGTT 728872 36 100.0 40 NNNNNNNNNN .................................... ACAGCCCAGCGCGCTGACGGTGTCACAACACTGCATTATT 728948 36 100.0 43 NNNNNNNNNN .................................... GTACTACTCTGTGCCGCAGCACTGTGGGCCGCGCTTAGACGAT 729027 36 100.0 42 NNNNNNNNNN .................................... CCGAGGTTAAACATTGTCTCGGCGTACTGTAGCAGTTGGTTT 729105 36 100.0 41 NNNNNNNNNN .................................... TCCACGTTGACCCGTCGAGCGACGTGCCGAGATAGATTGAT 729182 36 100.0 44 NNNNNNNNNN .................................... AAAAATTAGCGCGCCCGTTATATACCGGCGCGTTGTTGTTTAGT 729262 36 100.0 42 NNNNNNNNNN .................................... CCACCAGCGGGCGACGGTTTCAAGTACCTCGCCTGCCTCCGT 729340 36 100.0 46 NNNNNNNNNN .................................... TGGAATGCACCATCGGTAATCCAAGTTCGACGCGGGCGATGTTGGT 729422 36 100.0 39 NNNNNNNNNN .................................... CGGATGCACCGCGCCACCCATATAGTAAGGAATTCGGAT 729497 36 100.0 42 NNNNNNNNNN .................................... ACACACCGTGACTGTTTGAAGGACTATACGTAAGCTGCGACT 729575 36 100.0 41 NNNNNNNNNN .................................... TTAAGTGGCGACTTGAGTACGTCGCCTTCCCATAATAACCT 729652 36 100.0 44 NNNNNNNNNN .................................... CGACGATCGTCGAGACGATTGCCTCCACCAGCGGCGCAAAGGCT 729732 36 100.0 40 NNNNNNNNNN .................................... GCTGGCAAGGTATACGCAACCCTCCACCTGAAAGATGACT 729808 36 100.0 41 NNNNNNNNNN .................................... ACAAAGCCCCGGCGGTATCGCCGGGGCTTTTTGTATTGTCT 729885 36 100.0 39 NNNNNNNNNN .................................... GGAGCTAACGCTTCCGACAGAAACGATCCAATTTTGAGT 729960 36 100.0 43 NNNNNNNNNN .................................... ATTTTTGAATGGTCGAGCGCCAGTCGAGCAACGCGGTAGAGGT 730039 36 100.0 41 NNNNNNNNNN .................................... GGGTATACGTTACGTTGGCTTCGAGACGAAACGGGAGCGAT 730116 36 100.0 43 NNNNNNNNNN .................................... TTTCTCCTTTCTTTGCTGTCACCTTGTCCTTCGTCACTTCTAT 730195 36 100.0 44 NNNNNNNNNN .................................... TTTCGTTTGAGGGGCGGCAACGAAGCTGCCCCTCAAATTTTTAT 730275 36 100.0 43 NNNNNNNNNN .................................... AAACAAAAAAAAGTAGGCTGAGCGGTTGCCCACTCAGCCTATT 730354 36 100.0 45 NNNNNNNNNN .................................... CCGTACCGCTCGGCGTATTACCGGTGGGCAGACATTCCGTATAAT 730435 36 100.0 39 NNNNNNNNNN .................................... CAACTGGTCGCGGTGGGCCGGGGAGGACACTCACGCGGT 730510 36 100.0 39 NNNNNNNNNN .................................... CCTCCACTTCCAACGTGGAGGAGATGCGGAGAGTGCACT 730585 36 100.0 39 NNNNNNNNNN .................................... CCTCCACTTCCAACGTGGAGGAGATGCGGAGAGTGCACT 730660 36 100.0 45 NNNNNNNNNN .................................... CCAGGCTCTGAGAAGCTCTACGCGCTCTACGACATCAACACAACT 730741 36 100.0 40 NNNNNNNNNN .................................... GTGAGTACCGGGCGCAGCTAAAGGGGGGAGAGTACATCTT 730817 36 100.0 41 NNNNNNNNNN .................................... CGAGATTGTAGAGTTCCGCGGAACGGAACTCGGCTGGCTAT 730894 36 100.0 42 NNNNNNNNNN .................................... CAGCTCCACCTCTGCCGGGGTGAGGGGGCGCGGCAGCTTCAT 730972 36 100.0 45 NNNNNNNNNN .................................... ATATTATAATAATAGCATAAGAGATAAGAAACAGAAGGGAGAGAT 731053 36 100.0 40 NNNNNNNNNN .................................... AATTGTTGAATAGGAGGGAGTAAATGACCGTCAGTCTAAT 731129 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 277 36 42 TTTCAATCCCCTCGCGGGGATTTTGGTTTTTTGAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-9.40,-10.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [53.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [228,187] Score: 0/0.18 # # Final direction: R [0.27,5.28 Confidence: HIGH] >NC_010180 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================================================== ====== 309273 62 90.3 19 TTGGACGAAG -.....T..G..T.CC.............................................. GGAATGCAAGTAAAGAGGA 309354 62 100.0 19 GTAAAGAGGA .............................................................. GGAATGTAAGTAAAGAGGA 309435 62 100.0 19 GTAAAGAGGA .............................................................. GGAATGCAAGTAAAGAGGA 309516 62 100.0 GTAAAGAGGA .............................................................. ========== ====== ====== ====== ========== ============================================================== 4 62 19 ATAGGGAAAAGAAAGAGCAAACGTGTTGCAAGTTGTAGAGTTAAGGAAAGAAAAGCGCAAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.90%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.10,-1.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [712,264] Score: 0.18/0.18 # # Final direction: F [0.55,0.41 Confidence: LOW] >NC_010278 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 236954 28 100.0 32 NNNNNNNNNN A..TGTG..................... GCAGTCAGTCATCAGCTTGGACTTTTACTAGA 237014 28 100.0 32 NNNNNNNNNN ............................ TTTTCCCCCACCAACCGAGTGTTTTCAACATT 237074 28 100.0 32 NNNNNNNNNN ............................ GCTTGAGATTTCATTTTCTCCTTTTTCTCAAA 237134 28 100.0 32 NNNNNNNNNN ............................ ATTGTCAGAAAGAGGACTTTTTTCCATTTAAA 237194 28 100.0 32 NNNNNNNNNN ............................ GGTATCAATAGAGTATTGAATCTTGTTCGGGC 237254 28 100.0 32 NNNNNNNNNN ............................ ATGAGGTAATAAATGGAAAACGACTACATAGC 237314 28 100.0 32 NNNNNNNNNN ............................ ACGATAATGAAATCAGGCAAACATAAAAAAAT 237374 28 100.0 32 NNNNNNNNNN ............................ CTAACTGTTTTAGATTTTTGATTTCATTGATA 237434 28 100.0 32 NNNNNNNNNN ............................ TCAAGGTTTCCGGTTCCGTTATTCGAATGGAA 237494 28 100.0 32 NNNNNNNNNN ............................ AAGATAATCTTTTAAGATCATGTGCTTCAAAC 237554 28 100.0 32 NNNNNNNNNN ............................ CCCGGACAGCTTGGAATTTTTCAATATCGCAA 237614 28 100.0 32 NNNNNNNNNN ............................ ACTAATTTCGGCATTTGACCAAGCCACGCATA 237674 28 100.0 32 NNNNNNNNNN ............................ ATATTGCGATTGTCGGTGTATCTGAAGCCTAT 237734 28 100.0 32 NNNNNNNNNN ............................ GTATCTCATAAGCGGCAGAATATTCCTGATAA 237794 28 100.0 32 NNNNNNNNNN ............................ CAGAATTTGCAGCGTATCCGAAGGACTACAAA 237854 28 100.0 33 NNNNNNNNNN ............................ ATGATAAACTGATCACTTTATTTGCTTCTCAAG 237915 28 100.0 33 NNNNNNNNNN ............................ TTTCTAATTGTAGTATTCCTTCCGGTGGTTCAG 237976 28 100.0 32 NNNNNNNNNN ............................ TGATATTAATTTCTTCTATTTTTTGTTTATCT 238036 28 100.0 32 NNNNNNNNNN ............................ ACTGGCGACCATCTCTAAATCACGTTGTGCAA 238096 28 100.0 32 NNNNNNNNNN ............................ ATTAGAGTTGGCGATATTGTGATACGCAATAA 238156 28 100.0 33 NNNNNNNNNN ............................ AGTTCGCCCCCTGATCCTGTTCCTTTTCCAAAG 238217 28 100.0 32 NNNNNNNNNN ............................ CCCTGTAATGTACTGCCTTTATTGTATTTTGC 238277 28 100.0 32 NNNNNNNNNN ............................ AATAACATTCAACGGGCTTTAGTTTTACCACA 238337 28 100.0 32 NNNNNNNNNN ............................ GATTGCCATTGCAACACGGGCAATTTGGCATA 238397 28 100.0 32 NNNNNNNNNN ............................ GTTATAGTTAAGTCGTCATCTCGTCCTTAACT 238457 28 100.0 32 NNNNNNNNNN ............................ ACGAAGTTTTTAACCATTTGCTTTTTTTAACT 238517 28 100.0 32 NNNNNNNNNN ..........................G. AATTGCAACAATTTATTTTATGAGAATGTATA 238577 28 100.0 32 NNNNNNNNNN ............................ GAAATCGGGGAAATTTTAAAACGTATTTTAGA 238637 28 100.0 32 NNNNNNNNNN ............................ CAGTTTAAGAAATTTGCTCATGTGCTTATCAA 238697 28 100.0 32 NNNNNNNNNN ............................ GTTTCAAACGTCACCCCTTTACAACACCAGGT 238757 28 100.0 33 NNNNNNNNNN ............................ TCGCCATAACACCTCCATGCGTGATTTTGCTTT 238818 28 100.0 32 NNNNNNNNNN ............................ TAAATGAAAATATCTGTAAAATGGCAATGAAA 238878 28 100.0 32 NNNNNNNNNN ............................ AAATACAAAAAATGGGAGCATTGGCAAAATTA 238938 28 100.0 32 NNNNNNNNNN ............................ AAAAATTAGGCAAGTAGCTACCGCCTCCCTAC 238998 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 35 28 32 TTTCTAAGCTGCCTATACGGCAGTGAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [38,143] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_010296 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2823103 37 100.0 36 GCCCATAAGC ..................................... CAGCCCGAATGGTACGAGACAGCCTGGGCAGACCAA 2823176 37 100.0 36 GGCAGACCAA ..................................... TGCTAATCATTCTTTTAAATCTAATTCAGTAAACTT 2823249 37 100.0 37 CAGTAAACTT ..................................... GTGATTGAGGTGTAGGTAGTTCCCGCCCATCCAACTG 2823323 37 100.0 35 CATCCAACTG ..................................... ATTCTGATGGCCAGTTTACGGTTGAGGTAATGGGG 2823395 37 100.0 35 GGTAATGGGG ..................................... ATGTAAAACGGGAATCCGCAAAGAGTGTTACCCGG 2823467 37 100.0 36 TGTTACCCGG ..................................... AAGGATCGTCGGGCGCGGGATTCGGGAAATGAAATT 2823540 37 100.0 35 AAATGAAATT ..................................... ATGGTTTTTACTCCTAAGTATTTGTTTTTACTGGC 2823612 37 100.0 35 TTTTACTGGC ..................................... AAACTGTAACCCATATCGTTCCGTGATTCTACGGT 2823684 37 100.0 36 ATTCTACGGT ..................................... CCCAGATCGGATATTTAGTAAATTCGATTACCTCTT 2823757 37 100.0 35 ATTACCTCTT ..................................... ACCAAGTATTTTGCTGGTAAAGAAACAGACGAATT 2823829 37 100.0 35 CAGACGAATT ..................................... GCAGAATCGGAAAAGACGATTAACAATTTTTCCGA 2823901 37 100.0 35 ATTTTTCCGA ..................................... TTTTTAATCGATTCTTTTTCATTAGCAAGTAATTC 2823973 37 100.0 37 CAAGTAATTC ..................................... ATTTGCTTCTTATTGCCATAGTGACAAAACCGTATGG 2824047 37 100.0 36 AACCGTATGG ..................................... GTAAGCACCTCTCGATACTTGCCACTGGACATATTT 2824120 37 100.0 35 GGACATATTT ..................................... CAGTTGGACTGACTTATCGGCATCAGATTTTTAGC 2824192 37 100.0 37 GATTTTTAGC ..................................... TTTGAAACTGGCAATAGCGTCGGTGTAGGAGCGGCGG 2824266 37 100.0 36 GGAGCGGCGG ..................................... CCCTTCGAGGTAACGCCTTTTAAAGCCAATCCCAAC 2824339 37 100.0 40 CAATCCCAAC ..................................... AGTTAATCGATGAATAGCGATCACCCTCTTGACTGATCGA 2824416 37 100.0 35 GACTGATCGA ..................................... CGCCTACTAAATTCCCCTCATCTTGAATTGATAGC 2824488 37 100.0 AATTGATAGC ..................................... TTCTTTTGATGATGATGCTAACCGGGAAGCAATC ========== ====== ====== ====== ========== ===================================== 20 37 35 GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.30,-4.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [712,212] Score: 0.18/0.18 # # Final direction: F [5.05,0 Confidence: HIGH] >NC_010296 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2814769 37 100.0 40 NNNNNNNNNN ..................................... TTCAGAATTCGACACAATTATTGCTATAAAAAATGATAGC 2814846 37 100.0 35 NNNNNNNNNN ..................................... ATGGATTTTACATGGGATGAAGAAAAATCAAAATT 2814918 37 100.0 36 NNNNNNNNNN ..................................... CATGAAGGATACCAGATAGAACGTAACGATGGGACG 2814991 37 100.0 35 NNNNNNNNNN ..................................... CAATGGCAAGTGGAGAGGGGTGTTTATGATTTAAA 2815063 37 100.0 36 NNNNNNNNNN ..................................... GAGAGATTGCCTTGATCGGAATGTTACCTCATCAAT 2815136 37 100.0 35 NNNNNNNNNN ..................................... AACTTAATCCTCTAAAAAATCATGAGAGTCATAGA 2815208 37 100.0 36 NNNNNNNNNN ..................................... GGAGAATATCGGTATCTCTGAGGGTGCGTTGCGGGG 2815281 37 100.0 35 NNNNNNNNNN ..................................... GTGGTGAATGTGAGACTGCAAGTGGATAGGGAGCC 2815353 37 100.0 35 NNNNNNNNNN ..................................... TTGCCTTAGCCAACTTCCGTAATTCGTTAATTCCT 2815425 37 100.0 35 NNNNNNNNNN ..................................... CCCCCAATAGCCTTTCTTGGCTAATTTGAGGGCTT 2815497 37 100.0 34 NNNNNNNNNN ..................................... AGAAATGTGTCGAATTGGGCAGTTTATTGACCTA 2815568 37 100.0 37 NNNNNNNNNN ..................................... ACAACAATATCTTCAGAATTAGTCAAAGGATGATCCC 2815642 37 100.0 35 NNNNNNNNNN ..................................... TAATCACTTTTATTGCTGACTTTGCTGTACATCTT 2815714 37 100.0 36 NNNNNNNNNN ..................................... GATGCTTTATAGGGAGGAGAGAAAAATAAAAAAAGA 2815787 37 100.0 35 NNNNNNNNNN ..................................... TCCTATGGATGGGCATCGGAGGGTATTAGCTTGGT 2815859 37 100.0 34 NNNNNNNNNN ..................................... TCGATTAATCATCCTAAAGATATCGGCAGAACCG 2815930 37 100.0 33 NNNNNNNNNN ..................................... CTCTACTACTCCATCTACCCAATAAAAAACCCG 2816000 37 100.0 34 NNNNNNNNNN ..................................... AAGACTAGGAACATCAGCATAAGTTGAAAACAAA 2816071 37 100.0 35 NNNNNNNNNN ..................................... TTGGCACTTAAGAAAGGAACCCAAGATTTAAGCGT 2816143 37 100.0 34 NNNNNNNNNN ..................................... CCAAACACTAGCTTTTACAAAGCAACCAGCTCGT 2816214 37 100.0 35 NNNNNNNNNN ..................................... AAGCATGGAAAAACTAAGCGAGTTAACATCAGAAT 2816286 37 100.0 34 NNNNNNNNNN ..................................... AACCCTGATTCTAATGCAAGAGAATTGACTTCTA 2816357 37 100.0 34 NNNNNNNNNN ..................................... CGGCATTCTCTATCGGCGCGTCTCCGATAGACTC 2816428 37 100.0 35 NNNNNNNNNN ..................................... TCAGGATTCGGTCCTGTGTAGTGACATCTATAGTT 2816500 37 100.0 36 NNNNNNNNNN ..................................... AAATTTAGTTTTGACTGCAATTAATACTATCTCATC 2816573 37 100.0 35 NNNNNNNNNN ..................................... ACCTGAGAAAGCACGCTGGCGGGCGAGGAAATATA 2816645 37 100.0 34 NNNNNNNNNN ..................................... CTAAAATTACTAGAAGGGGGCGTGGTATGATTAG 2816716 37 100.0 35 NNNNNNNNNN ..................................... CGAAATTTTACTCGAAAAGCGTCGATTACTACCGG 2816788 37 100.0 34 NNNNNNNNNN ..................................... AATGGTTTGCATAATCCTAATTGCTACATCTCCC 2816859 37 100.0 39 NNNNNNNNNN ..................................... GATGCCATTGGTGAGCCGTCTTTATCTGATGATGAAAGG 2816935 37 100.0 35 NNNNNNNNNN ..................................... CTTATCCCTTAGCGAAAAAAAGCAGATTGCCTCTT 2817007 37 100.0 37 NNNNNNNNNN ..................................... CCAAAACAGCCATGGCATACTCGATGATGTCCAGGCT 2817081 37 100.0 37 NNNNNNNNNN ..................................... GTTTTTTAGCACCCAATCAAACCAACAACACGCAAAG 2817155 37 100.0 37 NNNNNNNNNN ..................................... ATTATACTCCCTAAAGCAGCTAAATTGTTTCCCGCCG 2817229 37 100.0 36 NNNNNNNNNN ..................................... GTGCTAAGACTAATACTGCATATTATTTTGGAGATG 2817302 37 100.0 32 NNNNNNNNNN ..................................... GGGATTGTTTTCTTTTGGGATCGAGTTCTCGA 2817371 37 100.0 34 NNNNNNNNNN ..................................... TGATAAATTGGCATCTCTTTTAAATCTTGCTACT 2817442 37 100.0 34 NNNNNNNNNN ..................................... CATCAGGCGATTTCAAAACTACGCGAATTGGAAG 2817513 37 100.0 36 NNNNNNNNNN ..................................... ATCCACTGCCCGACCCTGGGGACAATCCATACTAAG 2817586 37 100.0 35 NNNNNNNNNN ..................................... AATCTTTCGCGAAACAGCATCGCTAACTTAAATGG 2817658 37 100.0 34 NNNNNNNNNN ..................................... ACAAGCCTACAAATCGAACACCTACCCCTGCCCC 2817729 37 100.0 35 NNNNNNNNNN ..................................... TTGCTTGATAGAATCGTGGTACAAAAAAGCAACCA 2817801 37 100.0 35 NNNNNNNNNN ..................................... TTTTTTAATAATCAGATTAAGCCTAATTTAACCGA 2817873 37 100.0 33 NNNNNNNNNN ..................................... TTGGATAAGGCTGAGACCCGCATAGCCGATCGC 2817943 37 100.0 35 NNNNNNNNNN ..................................... ACGATAATTGCTGAATCCCAATCCTCACGAATTTT 2818015 37 100.0 35 NNNNNNNNNN ..................................... TAAATGTTATTAATTGGGCGTTAGAGAAAGCACAA 2818087 37 100.0 35 NNNNNNNNNN ..................................... CGATTTCCCCAAAAATACGATCTTCTTTGTTTAGG 2818159 37 100.0 34 NNNNNNNNNN ..................................... TTTGATTGGAATTGATACTCAATTTCTCTTTCTC 2818230 37 100.0 35 NNNNNNNNNN ..................................... CAATTTTCCCTAAAACAACATCTCGATCATGATTC 2818302 37 100.0 35 NNNNNNNNNN ..................................... GGGCTTAACGCGATCGGGTTCCTAACCGACTTTCA 2818374 37 100.0 35 NNNNNNNNNN ..................................... AAAGTTGCATTCTGAAAGTCTAAAATCTCATTGCC 2818446 37 100.0 36 NNNNNNNNNN ..................................... AAAGGAATTTTAACAGGGGGATACATTTGTTACTAG 2818519 37 100.0 36 NNNNNNNNNN ..................................... GTGATCAAGATTAATCGACCGGGGAATTAAATTAGC 2818592 37 100.0 34 NNNNNNNNNN ..................................... TCAGACTAACTCCGAAGGGAGTCTTGGGGAAAAA 2818663 37 100.0 34 NNNNNNNNNN ..................................... AAGTTCCAATGGTACGAAACAGCCTGGGCAGACC 2818734 37 100.0 36 NNNNNNNNNN ..................................... AACGATTTTAAGGATTCCGGGGATGCAGTCTCGCTC 2818807 37 100.0 34 NNNNNNNNNN ..................................... ATTCTAACTTAAACTCAAGAAAAATCAATAAACA 2818878 37 100.0 36 NNNNNNNNNN ..................................... CCCCTCATCTTGAATTGATAGCAGCGACGCATCATT 2818951 37 100.0 35 NNNNNNNNNN ..................................... TCCACAACGACGACGACCCCTTAACAGCATAAATC 2819023 37 100.0 35 NNNNNNNNNN ..................................... TCGATTACTTCTAAAACTTGAGACGCTCTGCTAGG 2819095 37 100.0 35 NNNNNNNNNN ..................................... AGGCAAGTCTTAGCCAAAGTTCTTAAACTACTATC 2819167 37 100.0 34 NNNNNNNNNN ..................................... TCGGAAAATAATCTTGATGTGACTCTTGATGCCC 2819238 37 100.0 35 NNNNNNNNNN ..................................... GTTAAAGATTTAATAGGCATTGTTTTTACTCCTAA 2819310 37 100.0 34 NNNNNNNNNN ..................................... CCATCGTAAATTCTGACTGCATAGCTATCTAATT 2819381 37 100.0 36 NNNNNNNNNN ..................................... TTGTAAAAATTATCTACATAAATCATCAAAGTTCCT 2819454 37 100.0 35 NNNNNNNNNN ..................................... CCAAAACTACAGCGACCCTACTGGTAACTTCCTGA 2819526 37 100.0 35 NNNNNNNNNN ..................................... TGCTGAATGAACTTATATATTGTGATGCCTCTAGA 2819598 37 100.0 35 NNNNNNNNNN ..................................... GTAATACCTTGAAAGAGCTAGAGTAGTAATCTATA 2819670 37 100.0 36 NNNNNNNNNN ..................................... TGTAAGTCACCCCATCATCATTGTTCCCACTACCAG 2819743 37 100.0 34 NNNNNNNNNN ..................................... TTCCGTGAATATTTATACTTACATTCACAGACTC 2819814 37 100.0 34 NNNNNNNNNN ..................................... GTTTTTAGGAATGATGCCTGCCGTGGCAATGTCT 2819885 37 100.0 36 NNNNNNNNNN ..................................... GTCTATAGGAGTATCTGGTAAATACCCTACTCCCTG 2819958 37 100.0 37 NNNNNNNNNN ..................................... TTCCCTATATCGCTTCTTTGAGCGGGGAGATTTAATT 2820032 37 100.0 33 NNNNNNNNNN ..................................... GTAATTCAGGCAAAAACTTCGGTTTTTGTTCAA 2820102 37 100.0 34 NNNNNNNNNN ..................................... TAAATATTCTTAGTTTTAATCCTCAGGCAAACCC 2820173 37 100.0 36 NNNNNNNNNN ..................................... AGTTAATAGTGGCTAGAGGAGTAGGATTAAATTGGC 2820246 37 100.0 34 NNNNNNNNNN ..................................... TTAAAAGCAGGTAGTTTTAACTACCTGCTTGATT 2820317 37 100.0 38 NNNNNNNNNN ..................................... TTGTGATCGACCTTTGCCTGCTTGCCAAGCTCTCGATC 2820392 37 100.0 34 NNNNNNNNNN ..................................... CTTCTACCCGCAATAATAGCGCTTCGATCTCTTG 2820463 37 100.0 36 NNNNNNNNNN ..................................... TTTGCTGTGGACTATAAGGGTCGCAACGCTCGATCC 2820536 37 100.0 33 NNNNNNNNNN ..................................... ATTGACAGATTACAGTGGGCTGAAACCCACCGG 2820606 37 100.0 35 NNNNNNNNNN ..................................... GCATTGGCAGATTTATTCAAATTAGCGATCGCATT 2820678 37 100.0 35 NNNNNNNNNN ..................................... ATTTTAGACATTTTTAGGTCTGTGCCAAGAATGCA 2820750 37 100.0 37 NNNNNNNNNN ..................................... CGTTAGTTTCAATTGAAGCATCAAGATAAATATCATC 2820824 37 100.0 37 NNNNNNNNNN ..................................... GTAATATTAAATTATAGAGAAAGACGACCGCAACTAA 2820898 37 100.0 34 NNNNNNNNNN ..................................... ATTTTTTTTAGCGACCCTTCGGCTTTGCTCGGGG 2820969 37 100.0 40 NNNNNNNNNN ..................................... TCATCCGTCTATCATTCACCTTTTTATAATACCATGAAAA 2821046 37 100.0 34 NNNNNNNNNN ..................................... ATGAGCCCATTAGTTGAGGGATTCACAAAAGTTT 2821117 37 100.0 35 NNNNNNNNNN ..................................... AAAAAAGGAGGACAAGTTGATGGGATTTGTAAAAC 2821189 37 100.0 32 NNNNNNNNNN ..................................... CGAATACTTCATCTGACCTCCTGTAGAATCGG 2821258 37 100.0 35 NNNNNNNNNN ..................................... CTCGCTCTAGCCTCGGAACGATCAGAAATCTACTG 2821330 37 100.0 36 NNNNNNNNNN ..................................... CTCTTTGGCTTTCTGATGTGTCTCCTCGCGACAAAC 2821403 37 100.0 35 NNNNNNNNNN ..................................... GCCATAAGAAGGGATCTCTTAAATATAAAATTATT 2821475 37 100.0 35 NNNNNNNNNN ..................................... AATTTCTTATTAGAGATTAAGGGGTAATTGCCCTC 2821547 37 100.0 37 NNNNNNNNNN ..................................... CCACAAACCTTTTTTACCGGAGTAACTTTTAGATCGA 2821621 37 100.0 35 NNNNNNNNNN ..................................... TCTTTATAAGCATATCTTCTCATTATCTCTCGCCA 2821693 37 100.0 35 NNNNNNNNNN ..................................... CTCAAACAAATCGGCTAAATCAAAACTCCAGTTTT 2821765 37 100.0 35 NNNNNNNNNN ..................................... TATTCCAATGCTCCCATTTGGGAGCCTAAAAAGAT 2821837 37 100.0 33 NNNNNNNNNN ..................................... CGAAATTCTGCAATTCCATCGGCAATAATTAAA 2821907 37 100.0 35 NNNNNNNNNN ..................................... CGAAATTCTGCAATTCCATCGGCAATAATTAAAAA 2821979 37 100.0 34 NNNNNNNNNN ..................................... ACAATCGAAATTAAAACTAATCCGATAGCGATTA 2822050 37 100.0 34 NNNNNNNNNN ..................................... TGGCAAAGGATAGGATAACTCTCTTAAACTCCGC 2822121 37 100.0 36 NNNNNNNNNN ..................................... GCTTCTGGTAGTGGAAATAATGACGACGGTGTGACT 2822194 37 100.0 39 NNNNNNNNNN ..................................... CTATGAAGTATCAGAAGATATTGCACGCAAAACAGTAAG 2822270 37 100.0 35 NNNNNNNNNN ..................................... CAACTCCTGCTCAACCTACTAAAATAGAGAAAATA 2822342 37 100.0 35 NNNNNNNNNN ..................................... ATTTGACGGCACATCTTTTGCTGATCAGCTAGAAG 2822414 37 100.0 35 NNNNNNNNNN ..................................... ACTAAGTATTTTGCTGGTAAGCAAATAGATGAATT 2822486 37 100.0 35 NNNNNNNNNN ..................................... CCTGATAGTGCAGTATCGCACCCCTCGCCTTAATT 2822558 37 100.0 37 NNNNNNNNNN ..................................... ATAGGCGATACGGGTATTCCATCCGGTTTCACCTGAG 2822632 37 100.0 34 NNNNNNNNNN ..................................... GAGGTACAGGTTGCGGTTTACTTAAGTCTCTAAC 2822703 37 100.0 35 NNNNNNNNNN ..................................... TTGGATACTTACGAAGATAAATTACCTTGTTCAGC 2822775 37 100.0 35 NNNNNNNNNN ..................................... TTGTAATTGAGCTTCGTTGTACAGCCAATTTAATC 2822847 37 100.0 1 NNNNNNNNNN .........................G..AC..AGGCA NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 113 37 35 GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.30,-4.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [235,57] Score: 0.18/0.18 # # Final direction: F [5.46,0.27 Confidence: HIGH] >NC_010296 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2826228 37 100.0 37 GGTCAAAACT ..................................... CTTAAGACAGTGCCTTTGAGCGATAAGGGCGATTATC 2826302 37 100.0 37 GGCGATTATC ..................................... GCAAATGCAAAATCTTCGGATCAAGCAGAATTATCTG 2826376 37 100.0 37 GAATTATCTG ..................................... GCAAATGCAAAATCTTCGGATCAAGCAGAATTATCTG 2826450 37 100.0 35 GAATTATCTG ..................................... AGGCGGGCCGGGAGACAGCCTTTTTCTTTGATCAG 2826522 37 100.0 35 CTTTGATCAG ..................................... TTTGTGAGTCCCTGTGCAACAATCCGAAAATTCCC 2826594 37 100.0 35 GAAAATTCCC ..................................... ACTACACACAACCGAATTGTAAGTGATAATTTATC 2826666 37 100.0 34 ATAATTTATC ..................................... CTGACAGAACGGGTTGAATGGGAAGGTAAGCCTA 2826737 37 100.0 34 GGTAAGCCTA ..................................... GCACAAAGTTGTCACTTTGTCTCGTCAGGAAAGC 2826808 37 100.0 35 TCAGGAAAGC ..................................... AAATTTTGCATTTGCTGAAAAAATCTTTGACCTTC 2826880 37 100.0 35 TTTGACCTTC ..................................... GCTGGTGTACCTAGCCTACAATCTTAGTTTAAATC 2826952 37 100.0 35 AGTTTAAATC ..................................... CATTTACTTTTTAATGAAGGCACGCCATAATTTAA 2827024 37 100.0 35 CATAATTTAA ..................................... TGTGCAAAGCTACGCCCATCGATTTCCCGTCTGGG 2827096 37 100.0 36 CCCGTCTGGG ..................................... TGGGAGATTGGAATCACAGCCGAAAAATAGGATCGA 2827169 37 100.0 35 ATAGGATCGA ..................................... CCGGCTTTTTTAGCTCCCTCAGTAATGATTATTGG 2827241 37 100.0 35 TGATTATTGG ..................................... CCCAACTATACCGATGATTTCGGTACTGAATACAA 2827313 37 100.0 37 CTGAATACAA ..................................... CCCGTATTTGCGGGTGTTGGAGCTATACTCAAAAAGA 2827387 37 100.0 34 CTCAAAAAGA ..................................... ACTATGGTATAATGAAAGTACAAACAAAGAAAAG 2827458 37 100.0 37 CAAAGAAAAG ..................................... TTGATTATTTCCGTGGCTATTTTTAAGCATTGCTCAT 2827532 37 100.0 34 CATTGCTCAT ..................................... CATAAAAGTGCCTCTTTAATTCCGGCTTCTAGAG 2827603 37 100.0 34 GCTTCTAGAG ..................................... ATTTTACTTGCAACTTATTCTCAATAAAAAATCA 2827674 37 100.0 36 TAAAAAATCA ..................................... CAGAGGCTTGAGCTAATTCAAATTTTTCACGCGCTA 2827747 37 100.0 36 TCACGCGCTA ..................................... TTTCCTTCCCTCTCGGCTTTTGCCCGGATAATCGGA 2827820 37 100.0 35 GATAATCGGA ..................................... TAAGTTCTGTAGAAAACGACTTAGATATACAGCTT 2827892 37 100.0 35 TATACAGCTT ..................................... ACTGTATTCCTTTGGTGCGAGAGTATCGGGGTATC 2827964 37 100.0 35 TCGGGGTATC ..................................... TTTCCTTTATTTTTGGCTGTTTCTCCTAAGCTTGA 2828036 37 100.0 35 CTAAGCTTGA ..................................... TTCGGAGTATCCTGTAGATATGTACTTTTATAAGG 2828108 37 100.0 36 TTTTATAAGG ..................................... TTTTTTGTATTCCGTGGAAGAATACGAAGAAATGAA 2828181 37 100.0 35 AAGAAATGAA ..................................... ATCGACATAAAACACATACTAACAGTCCTAACCAG 2828253 37 100.0 35 TCCTAACCAG ..................................... AAAGCTAGGCTAATAGCGGCACTGATTAAAATTTC 2828325 37 100.0 36 TTAAAATTTC ..................................... GTAACTGCCTTATTTTCTGGCAGTTTTTTCAAAAAT 2828398 37 100.0 36 TTTCAAAAAT ..................................... TACTCGTCGGGAACCCTATCACCCGCTTTCGGTTCC 2828471 37 100.0 37 TTTCGGTTCC ..................................... CTGCCATTGTCCGCAATGGTAGCCCTAAGCTATCTGA 2828545 37 100.0 36 AGCTATCTGA ..................................... GCCAATAAATCCAATTCTCGCCGGCGCGTCTTGACA 2828618 37 100.0 36 CGTCTTGACA ..................................... AACAGAAATATTGCTGATTTCGCCGCTATGCCACGC 2828691 37 100.0 35 TATGCCACGC ..................................... CCCTCGGAACAGCAGTTGCGGCGGTGGCTGAATAA 2828763 37 100.0 34 GGCTGAATAA ..................................... AATTACCACCGGCTTAATCCACCCAGACTGCCGA 2828834 37 100.0 38 AGACTGCCGA ..................................... GAGGGAAAATCTGCCCTTGTCGCAGATGCCCAAATATC 2828909 37 100.0 35 CCCAAATATC ..................................... CATGATTTTCTAAATATTCAGCTATCTCTAGCCGA 2828981 37 100.0 35 CTCTAGCCGA ..................................... CATTTACTTTTTAATGAAGCCACGCCATAATTTAA 2829053 37 100.0 40 CATAATTTAA ..................................... CTCACTTTAGGCTAGTGTTTGCCCTCTCGTGAAAAAGCAA 2829130 37 94.6 GAAAAAGCAA ...................................GT GAAGGGAA ========== ====== ====== ====== ========== ===================================== 41 37 35 GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.30,-4.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [39,300] Score: 0.18/0.18 # # Final direction: F [5.28,0.45 Confidence: HIGH] >NC_010321 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 121655 30 100.0 38 NNNNNNNNNN .............................. AGCTGAAAGACATTTTAAAGTAGCAGGGCAAGGTACAG 121723 30 100.0 37 NNNNNNNNNN .............................. AGTCTATCTTGGCCGACAGGTCTATCCCGATGTAACG 121790 30 100.0 37 NNNNNNNNNN .............................. ACAAAAGCGACATGACAATTACTTGCATGAATGGCAA 121857 30 100.0 36 NNNNNNNNNN .............................. GCAACATTGGCAAATGAGCTCAAGACGAAATTTAAT 121923 30 100.0 35 NNNNNNNNNN .............................. GGCCGTACCTCGGTCCAGGCGATCCGAGGTTGAGG 121988 30 100.0 36 NNNNNNNNNN .............................. ATTTATAATCTACAGATAAAACATAAGTTGTGCCTG 122054 30 100.0 37 NNNNNNNNNN .............................. TGCATTTCCCCACCTTCGCGGTAAAGCTCCACGAACG 122121 30 100.0 36 NNNNNNNNNN .............................. CCAAGAGCGAAGGCAGCGCCAAATGCGCCGGCATTA 122187 30 100.0 36 NNNNNNNNNN .............................. CGAGACCCAGAGCGGCAAGTTTGACATGATCAAGAA 122253 30 100.0 37 NNNNNNNNNN .............................. CGCCGAATTCAGCTGGAAGCATGGGGAGTGGAAGGAG 122320 30 100.0 38 NNNNNNNNNN .............................. ATACTATCACGGCATAAGGCACAAAAGATTGTTTATAT 122388 30 100.0 37 NNNNNNNNNN .............................. AAGTATAATCAAAGCGGATGTGCTGACCCAACAGTTT 122455 30 100.0 36 NNNNNNNNNN .............................. ACGTATAGCTTCAAACTGGCCGTAATTATAGGCAAA 122521 30 100.0 38 NNNNNNNNNN .............................. ATTTTCGACGATATACAGAAACCCACAACAATCCAGAG 122589 30 100.0 36 NNNNNNNNNN .............................. ATTTATTGACATGCGGCATATTCGGATTTGGATGGC 122655 30 100.0 37 NNNNNNNNNN .............................. TTTGCTGGTGCTCCAGAATGGTGCGTCCGGTTCTTTG 122722 30 100.0 38 NNNNNNNNNN .............................. TTGACAATAAAATCGCTTTTTCTGTTCAATATCCTATG 122790 30 100.0 38 NNNNNNNNNN .............................. TGCAAAATTTCAGAAAATTTCAGGAAAGGAGGTATGCG 122858 30 100.0 37 NNNNNNNNNN .............................. TGGGATGGTCGGATAAAAAAATTGCTGAACAATTAGG 122925 30 100.0 36 NNNNNNNNNN .............................. AGATACTTTTTAACTTCTTTATATATTTAATAAAAA 122991 30 100.0 37 NNNNNNNNNN .............................. ACCGATTCTTGTTCCTGCTGATTGTAGCAACATCAAC 123058 30 100.0 37 NNNNNNNNNN .............................. AAACCCGTAGACCGTCATACCGTGAAATCCTCACCGG 123125 30 100.0 36 NNNNNNNNNN .............................. GCCTTTTTGTCTAACACTTGGAATGCTATTAGCACG 123191 30 100.0 37 NNNNNNNNNN .............................. ACACAACTGAGGTGACTGTAAGCCGATGGAAGCAAAG 123258 30 100.0 37 NNNNNNNNNN .............................. GTTTAGGCACATCGTTTTCGCAGTTGCCGTTGCTAAG 123325 30 100.0 37 NNNNNNNNNN .............................. TGAGATTAAGGATTATCTTGTTGCTGACTGGGAGTTA 123392 30 100.0 38 NNNNNNNNNN .............................. ACTCTTGATACTTGATTGCTTCTCTTTCTGCATTCCAA 123460 30 100.0 37 NNNNNNNNNN .............................. CAGCACTCTTCCACCCCGCCGTTGACTAGTACGTTAA 123527 30 100.0 40 NNNNNNNNNN .............................. TAATGATTGATTCTTCTCTGCCGTCTTTATAAAGCACAGG 123597 30 100.0 37 NNNNNNNNNN .............................. AACAACATATTATCAAAATTATGAAATTTCACAAACG 123664 30 100.0 35 NNNNNNNNNN .............................. ACAAGCTCGCCTATCTTTCCACCAGCTGACTGCAT 123729 30 100.0 38 NNNNNNNNNN .............................. AATCCTGGCCCCGGGCAAAGACCACTTCTTCATGCTCC 123797 30 100.0 36 NNNNNNNNNN .............................. TGTAAACGAGGGAAAGGATGAAAAAAAAATGATAAA 123863 30 100.0 36 NNNNNNNNNN .............................. TGATATTTAAGCGCGCGATGTGGAGGGGTCTCGTGG 123929 30 100.0 36 NNNNNNNNNN .............................. CGTGCCTGCAGACTGCAATGCCTACGACGTCATGGA 123995 30 100.0 36 NNNNNNNNNN .............................. AGTACTAAAGATTGAGGAGGTATAAACATGGAAGAG 124061 30 100.0 37 NNNNNNNNNN .............................. CAGCCTGTTGCTTATAATTAAGGTAACAGCAGGTTAG 124128 30 100.0 37 NNNNNNNNNN .............................. AGCTGTTCCTGCAAGGATGCGATGGTTGCAGTTTTTT 124195 30 100.0 38 NNNNNNNNNN .............................. CCACCTTTTTTACCTCAATTAGTTCTATAGTATTAAAG 124263 30 100.0 37 NNNNNNNNNN .............................. AAACTAGTGATGGATATGTTGATTGGCTAAGTATTGA 124330 30 100.0 36 NNNNNNNNNN .............................. TTGCTTTAGCAAGATTGTTATTTTTTAACATATTAC 124396 30 100.0 36 NNNNNNNNNN .............................. GAAAAGCAGTTGGAGGAGGCAAAAGAACATGAAAAG 124462 30 100.0 37 NNNNNNNNNN .............................. CAGTATTGAAACATTAAAAAATAATGCAGAGCTGAAG 124529 30 100.0 37 NNNNNNNNNN .............................. CCTGTAGCACCTTTGTAGTTATCTAAAACCTCAATGG 124596 30 100.0 37 NNNNNNNNNN .............................. TAATATCCTGAAACAAAGAAAAAACGCTGAATCTCAG 124663 30 100.0 38 NNNNNNNNNN .............................. TAGAGCCTTTTAATATTGCAAAGGAAAAGGTGCTTTCG 124731 30 100.0 36 NNNNNNNNNN .............................. ATCGCTTAAATTGTTCTTCTGTTAATTCATTCTCTG 124797 30 100.0 36 NNNNNNNNNN .............................. AGTATTAAAAATTAAGGAGGTTTAAAAAATGGAAAA 124863 30 100.0 1 NNNNNNNNNN .................CCT...AAT.GTG NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 49 30 36 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-1.30,-1.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [184,87] Score: 0.18/0.18 # # Final direction: F [5.59,0.37 Confidence: HIGH] >NC_010320 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2340470 30 100.0 36 GTTTTTGAAA .............................. TTAAAGGAGGAAGATAAAAATGATAACTTCTGTAAA 2340536 30 100.0 39 CTTCTGTAAA .............................. AAGGTATCAAAAATTATGCTTATTTTGCGCAATAGAGAA 2340605 30 100.0 37 CAATAGAGAA .............................. CAAGCCAAACAATATACGTTAAGTTTTATTTTGCTGA 2340672 30 100.0 36 ATTTTGCTGA .............................. ATCGGGCCGGTCAGGGAAGTGGAACGGTTGTAATTT 2340738 30 100.0 37 GTTGTAATTT .............................. TGGGGACACAATTTACGATTAGGGACACAAAAACACC 2340805 30 100.0 39 CAAAAACACC .............................. CTGTATAAGTTGCAACTCCACTATTATCAAGCAATCTAA 2340874 30 100.0 37 AGCAATCTAA .............................. TTGGTTTCGGGCTGAACAGGTAAAGGCGTTTTTGCAA 2340941 30 100.0 37 GTTTTTGCAA .............................. GATACATTTACACCAACGGTAAAAAACCTTTAAAAGG 2341008 30 100.0 36 CTTTAAAAGG .............................. TCTTCATGTTCCTATCACCCCAAGCCTGTTATTCTC 2341074 30 100.0 TGTTATTCTC .............................. GAAAACTAACCCGCAGCCGATGCGGGGAGATAAAAAAA ========== ====== ====== ====== ========== ============================== 10 30 37 GTTTCAATTCCTTATAGGTAGGCTAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.70,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1511,327] Score: 0.18/0.18 # # Final direction: R [0.55,4.5 Confidence: HIGH] >NC_010320 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2342801 30 100.0 36 AGATTTTGGC .............................. CACATACAGGACATTCCCACACCCGCTCCGATAACT 2342867 30 100.0 38 TCCGATAACT .............................. AAGATTAGCTATTCTTCAACATCCACAGTATCCCTTCA 2342935 30 100.0 35 TATCCCTTCA .............................. GAAGAAGTTTTCTTTTATAGATTGTTAGTGGTTTG 2343000 30 100.0 35 TAGTGGTTTG .............................. GAAAGAAGATTTTCACAGCATGGCACTTAAAACAG 2343065 30 100.0 38 CTTAAAACAG .............................. TCTCAAGGCAACAGGTAGTACACCACAAACAGGAAACA 2343133 30 100.0 37 ACAGGAAACA .............................. CTGTGGTGACATGCTTTTTAAAGCTTCTGCCTCATTG 2343200 30 100.0 36 TGCCTCATTG .............................. TACAATGTTGCCCTTCTACTTGCAGCTCTAACACGG 2343266 30 100.0 37 TCTAACACGG .............................. GTAATGTGGATGGTATATTGTCATGGAGGTGGAGATA 2343333 30 100.0 36 GGTGGAGATA .............................. CCATTTCTATGCTTGCAATTATGCGGGCGAAGGAAA 2343399 30 100.0 37 GCGAAGGAAA .............................. CAGCGCCTAAAACCAAAATTACGTTTTGCATTGTAGG 2343466 30 100.0 35 GCATTGTAGG .............................. ATTTTGCATTCACCTTCTTCAATTTTCTTCTCTGA 2343531 30 100.0 38 TCTTCTCTGA .............................. TTCTCTGCTTATAACAGTCATTTTCTGTCATGAATTTT 2343599 30 100.0 37 CATGAATTTT .............................. AGCGCCATCATACTCGATTTCCTGCCGTATCACAAAA 2343666 30 100.0 37 TATCACAAAA .............................. AAGCAATCACCGGCAAAACCAACTGGTATGATGCACC 2343733 30 100.0 35 ATGATGCACC .............................. GAACAAGATGTACATGGAGCATATACCGATATCTA 2343798 30 100.0 36 CCGATATCTA .............................. TCCTTTTTCTTGCCATTAAAATCACTCCTAAATGTA 2343864 30 100.0 36 CCTAAATGTA .............................. CTAAAGTGTAGTTTGTATCTCTTACAATCGTTGCGG 2343930 30 100.0 34 ATCGTTGCGG .............................. ATTTTTTGAATTTGAAATTCACGAGTCAAAGGGT 2343994 30 100.0 36 GTCAAAGGGT .............................. GGGTTGTGCTTTAAAAAGTTTATGATTAACACTACA 2344060 30 100.0 36 TAACACTACA .............................. ATATAGGCCCTGAAATTCCTCTGGTAGTGCTTCTCT 2344126 30 100.0 35 GTGCTTCTCT .............................. CAAAAAGCGCAAGGGGAGCAACAACAAGAACCTAT 2344191 30 100.0 38 AAGAACCTAT .............................. GCGTCCACCTGTAAGTGCAAAAGAATGGGTGGAAGAAA 2344259 30 100.0 36 GTGGAAGAAA .............................. CCAGCGTGAGTCAATTTATTCCGTATTCAGTGCGGG 2344325 30 100.0 36 TCAGTGCGGG .............................. GTGAGGAGCGCCAAGAAGACGAGCAGGCGGTGCAAA 2344391 30 100.0 35 GCGGTGCAAA .............................. CATACAGTTCCCCGCAAAGAAGTAGCTCCAGCCTG 2344456 30 100.0 35 CTCCAGCCTG .............................. GCCGGGATGAATACACACACATCGGCGCCAGCCGA 2344521 30 100.0 36 CGCCAGCCGA .............................. GGCTAATAAAATGATTTTGCAAGCATTAAAAAGACA 2344587 30 100.0 36 TAAAAAGACA .............................. ATACTCCTTATTTGCCTGTCTATCATCCTTAAATCT 2344653 30 100.0 35 CCTTAAATCT .............................. CAACTCTGTGGATACACGTCAACCATGTTTGTTTT 2344718 30 100.0 37 TGTTTGTTTT .............................. CAACACATGAGAGTAGACGGAAACGATGATGATAGTC 2344785 30 100.0 35 GATGATAGTC .............................. CGGCAGGCCATATTGATGTTAGTAGCACATCTCTA 2344850 30 100.0 36 CACATCTCTA .............................. TATTTATATGCTCCTGTACGCATGGCGAGCTGAATA 2344916 30 100.0 36 GAGCTGAATA .............................. AAAGAAGAGCTTGAAAAGGAGGAGATGAATTCAGAA 2344982 30 100.0 36 GAATTCAGAA .............................. TCATAGATACCGAATACGTCAAAGTTCTTGAAGACT 2345048 30 100.0 38 CTTGAAGACT .............................. TTATAAAGCTCAACTACTTCTTTTGGTGTTATATTCAA 2345116 30 100.0 34 TTATATTCAA .............................. CTGGGGAAGTCTTTAATGAACCTGTGCAGGAATA 2345180 30 100.0 36 TGCAGGAATA .............................. CCCCCTTGGGTATTTCTACGTAACCGAGATTGAGCG 2345246 30 100.0 38 AGATTGAGCG .............................. TAGTCCCATGTTACCCATGCTCCAGATGCGGAATACTT 2345314 30 100.0 35 CGGAATACTT .............................. GCAGGCTTGGACACTCTTACAAGGTACTTTTACTC 2345379 30 100.0 37 ACTTTTACTC .............................. GAAGGTTGCCTGGGCTATGTGGACAATCCAGAAGGCA 2345446 30 100.0 36 CCAGAAGGCA .............................. GCGTAGTAGTTTACAATTACAAGTTTTAACTTCAAA 2345512 30 100.0 36 TAACTTCAAA .............................. GGAGTCTTGGAAAGGACTCCATTACTTCGAACTCGA 2345578 30 100.0 36 TCGAACTCGA .............................. CCATCACGGATGCACTAAAACCGGCTAAATTCAGCG 2345644 30 100.0 38 AAATTCAGCG .............................. TTAAAACGTTCTGGAACTGTTCTTGTACGCTATCCGCA 2345712 30 100.0 36 GCTATCCGCA .............................. GACATAGTATGGAACAAAAGGGTTTTAAGTTCGACG 2345778 30 100.0 37 AAGTTCGACG .............................. GCTGCTATGACTATCCCAACAGGGCCAGTTATTAGAG 2345845 30 100.0 38 GTTATTAGAG .............................. CCATCCATTTTACAAAGCAGTATATATCACAAAATAGA 2345913 30 100.0 36 ACAAAATAGA .............................. TAGGCAATAGTTTATACGTCTAAAACAAAATCAAAG 2345979 30 100.0 36 AAAATCAAAG .............................. ACTCTCTCATCGACGACCTCCGCATCTCCAACCGTG 2346045 30 100.0 36 TCCAACCGTG .............................. TCATCTGCCGTCAGCCACTCTTTTAGCACTTTGCCT 2346111 30 100.0 37 CACTTTGCCT .............................. GGCGTAGATAACCCAGACAGGCAGTACACCATAGCAA 2346178 30 100.0 35 ACCATAGCAA .............................. CGTAGTTTTTGAAGAAGTAAAGGAGGATTACTCTT 2346243 30 100.0 36 GATTACTCTT .............................. GCATTAAACGGGATTTGGGGGATATAGGGTTTCACA 2346309 30 100.0 38 GGGTTTCACA .............................. TTGCAAGCTAATCATAAAGAAAATAAAGTCCCTTTTGG 2346377 30 100.0 35 TCCCTTTTGG .............................. GACAATGGTATACCACTTAAGGAATGCGTATCAGA 2346442 30 100.0 37 GCGTATCAGA .............................. CACTTTTAAAGCAAGGAGCTTTAAAAGGACTTTCTAT 2346509 30 100.0 37 GACTTTCTAT .............................. TTAGCCAGCTTTTTATTTCTGTTGTAGAAATTTTATT 2346576 30 100.0 37 AAATTTTATT .............................. CTACATCTAAGAGTGGACGGAACCGAAGAAAATAGTC 2346643 30 100.0 38 GAAAATAGTC .............................. AAAGTGTATCTCCCAAGACCACCGATACAAGCAATCAA 2346711 30 100.0 36 AAGCAATCAA .............................. GTTCATTTAACTTCCCTCCTTCGCTGTTTCTATAGT 2346777 30 100.0 36 TTTCTATAGT .............................. TATTTCAGCATAGTTATTGCTATCCTGCTGGGCATA 2346843 30 100.0 GCTGGGCATA .............................. AACCAAACTTGAAAAAAGCTGCATTTTTCAAGTTTA ========== ====== ====== ====== ========== ============================== 62 30 36 GTTTCAATTCCTTATAGGTAGGCTAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.70,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [153,325] Score: 0.18/0.18 # # Final direction: R [0.37,4.68 Confidence: HIGH] >NC_010321 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 126525 30 100.0 38 ATAGACCTTG .............................. CGCCGAGGTCTTCTCCTGTCGCGATATAATGCGACAGG 126593 30 100.0 36 ATGCGACAGG .............................. GGCAATAGTTTTATTACGTCCAAAACAAACTAAAAG 126659 30 100.0 37 AAACTAAAAG .............................. AAAGGGCGGTTAAACTGCCTGAAAACGGCATAGTGGG 126726 30 100.0 38 GCATAGTGGG .............................. CATGGAAGCAGCAGCCGAGGCCACAGGTGGAGTTTATG 126794 30 100.0 38 GGAGTTTATG .............................. ATGCACCTTGCTTTAGGAGTGCATAAGCCTCTCTCCCG 126862 30 100.0 37 CTCTCTCCCG .............................. TAAAGCAAAAAACCAGTGGCTTTGCTGCAAGGGTTGA 126929 30 100.0 36 CAAGGGTTGA .............................. AGCTGTTGTTTTGACATATTCATCATCCTTTCTGAA 126995 30 100.0 39 CCTTTCTGAA .............................. TGACATTGTCTTCTTTAATTACCTTTCTTATGAAATCCG 127064 30 100.0 35 ATGAAATCCG .............................. GCAGGCAACCCAAAGCGGATGCATTTATGGATTGG 127129 30 100.0 36 TATGGATTGG .............................. ATTAAGTTGTTGGGCCATGATATCAGGGGCAATAAC 127195 30 100.0 36 GGGCAATAAC .............................. TAAGAACCTGTCATAATCTTTTCATTCTTATTTCTA 127261 30 100.0 36 CTTATTTCTA .............................. AAGGAATTTTGGCTAATAAGCTTGAAAACTTCCATC 127327 30 100.0 37 AACTTCCATC .............................. CAAAAATTCTGTACTTTATACCGTTGATTTTTTTATG 127394 30 100.0 37 TTTTTTTATG .............................. TACGCAGTACATACAGCAAAGAAGCAGATATTACAGG 127461 30 100.0 38 ATATTACAGG .............................. TAGCACCGGCATCCAGTAATCATCATGGAAATTATGAG 127529 30 100.0 38 AAATTATGAG .............................. CCATGACGTGGCGGCATCATTACAATAAGACGATTAAG 127597 30 100.0 38 GACGATTAAG .............................. TCTACCGTGACGGGTCGGTGGTCCAGCCGACCGAATAG 127665 30 100.0 38 GACCGAATAG .............................. GTCCATCTTTTTATATTAGCCATCATTATCACCTCAAC 127733 30 100.0 36 TCACCTCAAC .............................. TGGATTACGTGGGCATAGAGAACAAGGTTGACGCCA 127799 30 100.0 35 GTTGACGCCA .............................. CATAGGCCGTGGCTGGGCCGGTATCGGGTATAACG 127864 30 100.0 36 GGGTATAACG .............................. GGTATATAAACGTCTACGACAATGATGAAGATGTAT 127930 30 100.0 GAAGATGTAT .............................. AGAGGAACAATTGGAATGTATGAAATAGGACAAAGA ========== ====== ====== ====== ========== ============================== 22 30 36 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-1.30,-1.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [328,153] Score: 0.18/0.18 # # Final direction: F [5.18,0.37 Confidence: HIGH] >NC_010320 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 764967 30 100.0 37 TTTTTAACGT .............................. AAGGAAAAAATGAGGTTTTGAATTTGGGCGGGAGTGG 765034 30 100.0 36 GCGGGAGTGG .............................. CTATTCAAATTCAAGGGATAAATCAGGTAGGAGAAT 765100 30 100.0 36 GTAGGAGAAT .............................. CTTTGAAGTATTTTTTCCTTCGATAATACAGCTCTC 765166 30 100.0 36 TACAGCTCTC .............................. AACAAAAAATCAATATGAAAAATATCAGGCGTTACG 765232 30 100.0 37 AGGCGTTACG .............................. TTCATTTCGTTTTATGTCTCCTCCCCTGCAAAAATTT 765299 30 96.7 GCAAAAATTT .............................T TAAAATTAGATACAAATACTTTTACAAGCGGTAATGCTG ========== ====== ====== ====== ========== ============================== 6 30 36 GTTTTTAGCTTACCTATAAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.80,-0.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [773,403] Score: 0/0.18 # # Final direction: F [5.28,0 Confidence: HIGH] >NC_010320 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2348502 30 100.0 36 NNNNNNNNNN CAC.ATT...AGG................. CTTTTCTGACCACCAAAAACCTATGTGGCTGTTCTG 2348568 30 100.0 35 NNNNNNNNNN .............................. GATTCTACTGCATTATTACATCTTGTGCTACATCA 2348633 30 100.0 37 NNNNNNNNNN .............................. TCAGCAGGTTTTATGTCAAGCCTATCAAGCACGTCTT 2348700 30 100.0 36 NNNNNNNNNN .............................. TTAGCCTCAGCTAATCTCTGTTGAAACTCCTCACTC 2348766 30 100.0 36 NNNNNNNNNN .............................. CACATTGAAAGATGGCACGGTTATTAAAATAGACGA 2348832 30 100.0 36 NNNNNNNNNN .............................. TTCAAAGCGTATTTACATTTTAGCAGATGTGGATGG 2348898 30 100.0 36 NNNNNNNNNN .............................. TTGCCACGTTCAGGGGCTCTTCTTTTCATTTCTCTT 2348964 30 100.0 38 NNNNNNNNNN .............................. CAACGTCTATGTCTATGCTTGCGTGCGGCAGATTGCAA 2349032 30 100.0 36 NNNNNNNNNN .............................. ACCCACCAAACCAACAGGTGAGATTGTTCCACGATA 2349098 30 100.0 36 NNNNNNNNNN .............................. TGTGCCTATTTCAGACTCAAAACCACCATTTGCCAA 2349164 30 100.0 38 NNNNNNNNNN .............................. ACAAGCCCAGTAGGGCTTTTATTTTTGCGCAGAAAGGA 2349232 30 100.0 39 NNNNNNNNNN .............................. CAATAAAGAGCTGTTTGAGATGCTACAACAAATTAGGCT 2349301 30 100.0 36 NNNNNNNNNN .............................. TGCTCCGACGTGCCATAACTGCTATAGCAGATACGT 2349367 30 100.0 36 NNNNNNNNNN .............................. GTTGTGAAACTGCCGGAGGATATTGGTGAAGAAAAA 2349433 30 100.0 35 NNNNNNNNNN .............................. CCGAGTTCAATACCTTCACCCACCAAACCAACAGG 2349498 30 100.0 36 NNNNNNNNNN .............................. ATGTAGACGTATATGTCGCCGCCAGCACCAGCAACC 2349564 30 100.0 36 NNNNNNNNNN .............................. GCTGCTCTTCTTTTTGAAACTTTTTAGCTTCTGCAA 2349630 30 100.0 37 NNNNNNNNNN .............................. TAAGTATCCGCACCAATATCTTTTGTGCTGCAAATAC 2349697 30 100.0 35 NNNNNNNNNN .............................. ACAAATTGAAACGAAAGGAGGTATGCTTATGAGCT 2349762 30 100.0 36 NNNNNNNNNN .............................. TAGGTTTTAAAGTACACTACAGGGTTGGTGGTGGTG 2349828 30 100.0 36 NNNNNNNNNN .............................. GAAGTCGCCGTTATTAGCTTTGCAAAAGGCTATATA 2349894 30 100.0 36 NNNNNNNNNN .............................. TAGGTTTTAAAGTACACTACAGGGTTGGTGGTGGTG 2349960 30 100.0 36 NNNNNNNNNN .............................. GAAGTCGCCGTTATTAGCTTTGCAAAAGGCTATATA 2350026 30 100.0 37 NNNNNNNNNN .............................. CTAATGAAGGATTACTGCGCCCATTCTCAATATCACT 2350093 30 100.0 37 NNNNNNNNNN .............................. CTACTGTGAATTAGCACAAAGAGAGGAGGCAGCGATA 2350160 30 100.0 37 NNNNNNNNNN .............................. TCCCAATTTTGGGGATTTATTAAATCCTCTAATAAAT 2350227 30 100.0 38 NNNNNNNNNN .............................. GGAGTAAATCTTTTTTAGTGACTTTGTACTTTTTAGTG 2350295 30 100.0 36 NNNNNNNNNN .............................. TTCTCACATTCAACCCAATATCAGCTTTACATTGGT 2350361 30 100.0 36 NNNNNNNNNN .............................. AAATTATCAAGTTATCTTCCTTTGCACTCTAAATGG 2350427 30 100.0 36 NNNNNNNNNN .............................. TATCGGATTCCTACGTAAAAATTACAAAGGTTGCAA 2350493 30 100.0 38 NNNNNNNNNN .............................. CAGGTATGAAATCTCCGTATTCTGCAAACTCGTCTTTC 2350561 30 100.0 37 NNNNNNNNNN .............................. AATTGTTTTTCTTCTTTTGTAAGTTCAAGTTCAAGCC 2350628 30 100.0 36 NNNNNNNNNN .............................. GCATAAACAAAGCAGAAGTAGTACCAAGCCCTTACT 2350694 30 100.0 37 NNNNNNNNNN .............................. AAATGTTTGTTTTGACAAACTCAATTACTTTCTTTTC 2350761 30 100.0 38 NNNNNNNNNN .............................. TGATGAATTAGGCCGAATACTTCGACCTGTCGTTGGGT 2350829 30 100.0 36 NNNNNNNNNN .............................. TATTGAAAGTAGATTTGGAAAGATGCATAGGCAAAT 2350895 30 100.0 37 NNNNNNNNNN .............................. CTGCATCATCATAAGGTGTTTCGAGCGGAAAATCGGT 2350962 30 100.0 36 NNNNNNNNNN .............................. AAGACGCAGCTTGACAGAGGTAACTGTTGGCTGGGG 2351028 30 100.0 36 NNNNNNNNNN .............................. GTAACGGGAGGTAGATAGCATGGCAATGATACAAAT 2351094 30 100.0 36 NNNNNNNNNN .............................. GCGACCCTGCATTACAGGCTGGTGACTACATCAACC 2351160 30 100.0 36 NNNNNNNNNN .............................. GATTATTCATGAATGGAAGCCAGGGGTAAACATATC 2351226 30 100.0 37 NNNNNNNNNN .............................. ACGACCCATCGGCGCTTATAAAAATTGGCTGGAAAGA 2351293 30 100.0 36 NNNNNNNNNN .............................. GATTATTCATGAATGGAAGCCAGGGGTAAACATATC 2351359 30 100.0 37 NNNNNNNNNN .............................. ACGACCCATCGGCGCTTATAAAAATTGGCTGGAAAGA 2351426 30 100.0 36 NNNNNNNNNN .............................. GATTATTCATGAATGGAAGCCAGGGGTAAACATATC 2351492 30 100.0 37 NNNNNNNNNN .............................. ACGACCCATCGGCGCTTATAAAAATTGGCTGGAAAGA 2351559 30 100.0 37 NNNNNNNNNN .............................. CTTCAGGAATCCAATCATGAATTCCTGTGGAACCCCA 2351626 30 100.0 38 NNNNNNNNNN .............................. TTAGCTATTGGTATAGCTAAACCGTCTATATGTCCTCT 2351694 30 100.0 37 NNNNNNNNNN .............................. TGTCAAGTGGAAGCCTTAAAACATATTACAATTCCAT 2351761 30 100.0 35 NNNNNNNNNN .............................. ACCGCTGCCGGTGGATGAATATACAACGTTGAAGA 2351826 30 100.0 37 NNNNNNNNNN .............................. GCAATAAATGCTATTCAAGCTGTGCTTCCCTTAGCTG 2351893 30 100.0 36 NNNNNNNNNN .............................. GTACACCAGAAAACAAAGTAGCCCAATCTAACTGCA 2351959 30 100.0 36 NNNNNNNNNN .............................. TTTCTACCGAATCAACTTTTATTTGTTTTTTCATTT 2352025 30 100.0 36 NNNNNNNNNN .............................. TGAAGTAGAAGGCGCGAATACGCTAATGGTGCCGGG 2352091 30 100.0 36 NNNNNNNNNN .............................. TACAGTTGGCGGTGTTACGGTAAATTTCAAGCCTGA 2352157 30 100.0 35 NNNNNNNNNN .............................. GCCCAATGCGCAGCCGAATATGGCCACAGGTGGCA 2352222 30 100.0 36 NNNNNNNNNN .............................. CTGCTGCTGCATCGGTTGCAGATGTGCCCGGGAGGG 2352288 30 100.0 36 NNNNNNNNNN .............................. GCGTACAGGCACAGCAGACAAAATCTGTATCCGCAG 2352354 30 100.0 36 NNNNNNNNNN .............................. TTTACCATGTTGGTTTTACGCTCAATCTCGGTTACG 2352420 30 100.0 37 NNNNNNNNNN .............................. TCACAAATTATGTCATCGAGGATATACCGCTCAACGA 2352487 30 100.0 36 NNNNNNNNNN .............................. ATTCCGCTACTATATTTGCTAATTCTTCTTTTGTTA 2352553 30 100.0 36 NNNNNNNNNN .............................. TGATAGCACAATGGAATTTGGCACCGCTGTTCAAAA 2352619 30 100.0 36 NNNNNNNNNN .............................. CTTTATATCCCAGCATTTTTGCCATTTGTTCTTGTG 2352685 30 100.0 36 NNNNNNNNNN .............................. TATGAAGAATGGGAAGGAGGTACAATCACATGAACA 2352751 30 100.0 34 NNNNNNNNNN .............................. GCAAAAGAAGCCGGGTTTTTTGGAGGTGAAGTAG 2352815 30 100.0 37 NNNNNNNNNN .............................. CTGGTTTCCATACAGAACTTCAATCTGCTGTTGTATT 2352882 30 100.0 37 NNNNNNNNNN .............................. CCTTCCCATTCTTCATATCTCTTAAAAACTGTTCCCC 2352949 30 100.0 37 NNNNNNNNNN .............................. AATTGTTTTTCTTCTTTTGTAAGTTCAAGTTCAAGCC 2353016 30 100.0 36 NNNNNNNNNN .............................. GTAATTGTGGTTTTGATAGAAGTAATCACCTACCGG 2353082 30 100.0 36 NNNNNNNNNN .............................. TAGAAAACTTACACCTGAAGAAATTGAAGAAACCGT 2353148 30 100.0 36 NNNNNNNNNN .............................. CTGGTCAATTCTTCAAAATTGGTTCCACTTGGATAT 2353214 30 100.0 36 NNNNNNNNNN .............................. AAAACAAAGATGAATATATTAGCATAGAAAAATTGT 2353280 30 100.0 36 NNNNNNNNNN .............................. ATGAATTGTTTATTACCCTCACTTATAAAGAAAATA 2353346 30 100.0 37 NNNNNNNNNN .............................. TTATTTATGAAATTCTATTTGTTCTAAGTACTGCCCA 2353413 30 100.0 37 NNNNNNNNNN .............................. GTATTGAAAGTAGATTTGGAAAGATGCATAGGCAAAT 2353480 30 100.0 37 NNNNNNNNNN .............................. CAATAATTTTTGGAAAAGAAGCTGCAACAGTTCCTTA 2353547 30 100.0 35 NNNNNNNNNN .............................. GGTGTTCAGGATACATCAAGAAGCGGTTTATATCA 2353612 30 100.0 36 NNNNNNNNNN .............................. GAAAAAAGAATCTAATCAATTAACAGTTATGTATTA 2353678 30 100.0 36 NNNNNNNNNN .............................. AAAGTTATTGCTTCCATATCAAGCACTTTTGAAATT 2353744 30 100.0 36 NNNNNNNNNN .............................. GGAATATGAAAATGCAGGATTGCACTTTGAACCAAG 2353810 30 100.0 37 NNNNNNNNNN .............................. CCTGTGGCGGTTGGCGAAGGCTTCAGAGATGGCACAA 2353877 30 100.0 38 NNNNNNNNNN .............................. GCAAGCCTTAAATTATCTAAATCATAAATCTTTTTGTA 2353945 30 100.0 36 NNNNNNNNNN .............................. TGGAAGTGCAACAGCCGAATTCACTGGACATACTAC 2354011 30 100.0 36 NNNNNNNNNN .............................. CATTGGACGCGATAGAGTCATTGATGAAGTATGTGC 2354077 30 100.0 37 NNNNNNNNNN .............................. GAATTGCCCATTGGCATATTCTATCAGGGAAATATGG 2354144 30 100.0 36 NNNNNNNNNN .............................. TGAGAAAGGATGTGGATGTGATGGCTATTATCTATG 2354210 30 100.0 38 NNNNNNNNNN .............................. ATTTTTAAAAGTTTTTGTAGAAGTTCTTGCGGCAACTC 2354278 30 100.0 37 NNNNNNNNNN .............................. ATACGCTGTGGGAGCGTATTGCTTAGTATACACATAC 2354345 30 100.0 37 NNNNNNNNNN .............................. CACACACGTCGGGCAGTGCCCGACGGAACTAAATTTA 2354412 30 100.0 37 NNNNNNNNNN .............................. TTTAAATGTCTTTAAGACAATTATAACACAAATAAAA 2354479 30 100.0 37 NNNNNNNNNN .............................. GGGTTTCCCTCGACAGGCCTTTCCGCCTTATTATTTA 2354546 30 100.0 36 NNNNNNNNNN .............................. CGCAAGTTTCCTCAACACCGCCGTTTATTAACTCAT 2354612 30 100.0 36 NNNNNNNNNN .............................. TCGCCAGGCTTATTTTATTTATCAGCATGGAATATG 2354678 30 100.0 37 NNNNNNNNNN .............................. GCCACGAAATCTTGCTGCCCACTGCCGTGCCGACTGC 2354745 30 100.0 36 NNNNNNNNNN .............................. GTAAATATGGAATAGATTTAGAAAAAGCCATTGAAA 2354811 30 100.0 36 NNNNNNNNNN .............................. AATGTGGCAAAAGGCTAATCCCGGTCTTGGTACAAT 2354877 30 100.0 36 NNNNNNNNNN .............................. CACACTTTTTCATGATATAATGTAGATGGAATTATA 2354943 30 100.0 36 NNNNNNNNNN .............................. CCACCCTGTATAAATAATCTGAGAACACATAAAATA 2355009 30 100.0 36 NNNNNNNNNN .............................. ATTATGGGCCCTTGCTAGTATTAAGAAGACAAAAGT 2355075 30 100.0 39 NNNNNNNNNN .............................. GATGATATATGCCAGGAGCAGAATTAGCGCAATATGGAA 2355144 30 100.0 37 NNNNNNNNNN .............................. GAAGCAAAACATGGCATAGTAGGTTTTGCATTATTTA 2355211 30 100.0 36 NNNNNNNNNN .............................. ATATTTTTGAAATGGGGGTATAATTATGGCACTATT 2355277 30 100.0 37 NNNNNNNNNN .............................. GAAGTATGGCGTTAGTAAAACGCATATTTCCAGAAGC 2355344 30 100.0 36 NNNNNNNNNN .............................. CTCGAAAATTATATATTCTTTCATTCGTCTATGCCC 2355410 30 100.0 37 NNNNNNNNNN .............................. AAAAATTTATGGAGAAATACCAATTAGAAGATTTAGA 2355477 30 100.0 37 NNNNNNNNNN .............................. TAGCTGCTCTGGATGCAAAGGCAGATTATATACCGCT 2355544 30 100.0 36 NNNNNNNNNN .............................. ATTAAGAGAGCGGGCTAAATGCCCGCCCGCTAACTT 2355610 30 100.0 36 NNNNNNNNNN .............................. CTTTTCAAAAAACATATACATATCTTCTGCTGCTTT 2355676 30 100.0 37 NNNNNNNNNN .............................. TTCATTATCAGAACCCTCAAAATTAGCATTAATCAAA 2355743 30 100.0 35 NNNNNNNNNN .............................. AAGAGCAGCAAAAAAGGAGAGTTTATCTCTCCCTG 2355808 30 100.0 36 NNNNNNNNNN .............................. TTTCTGACCTCTTTTTCAAGAAGTAACCTAACAAGC 2355874 30 100.0 36 NNNNNNNNNN .............................. GCACCACACATATTACAAGTAGCCGACACAACAAAA 2355940 30 100.0 36 NNNNNNNNNN .............................. TTGCTACTTTTTTAACATACGATGTTGTACAGAGGT 2356006 30 100.0 37 NNNNNNNNNN .............................. ATAATGCAAAACCTACTATGCCATGTTTTGCTTCTAA 2356073 30 100.0 37 NNNNNNNNNN .............................. GAAAAGTTGCGTTGGCAAATGCATTTGTGAAATTGAT 2356140 30 100.0 37 NNNNNNNNNN .............................. CTAAATTAACGAAAGACGATTCAACAGGAGTAACATA 2356207 30 100.0 36 NNNNNNNNNN .............................. TATAGATGAGCAATCTGAGAGACATACGAACAAAGT 2356273 30 100.0 38 NNNNNNNNNN .............................. GAATATCTTTAGTCGCTCGTGCTTGTCAGGTGTCATTT 2356341 30 100.0 36 NNNNNNNNNN .............................. CTGCAATGAAGGCTAAAGACAGTGTGCTGAAGTTCT 2356407 30 100.0 37 NNNNNNNNNN .............................. TTGGCAAGCTGGAAGATTATAGCCTGGAGAATTTCAA 2356474 30 100.0 38 NNNNNNNNNN .............................. ATGAATTGCCCAACGTCTGCCATATGCAGCATTACCTA 2356542 30 100.0 36 NNNNNNNNNN .............................. TTGTTCCAATTTGACCAAAGGTCATTGGCATTTCTC 2356608 30 100.0 37 NNNNNNNNNN .............................. GATATCAGGTGGGTTACATACTGATGTCTTGGGTCGG 2356675 30 100.0 38 NNNNNNNNNN .............................. GGATACAGTCTGGTAGCCAACTCCTCGGTGGATATCTC 2356743 30 100.0 36 NNNNNNNNNN .............................. GTACCTTACCGTCATCTGCCTTCACCTACTTCCTTC 2356809 30 100.0 36 NNNNNNNNNN .............................. TGCCATAATATACGGTTTCATTGTTTGCCAGAACTA 2356875 30 100.0 37 NNNNNNNNNN .............................. GGTGTAAAGAGTGGTAATGTTAGTGAGTCATTGACCA 2356942 30 100.0 36 NNNNNNNNNN .............................. GATACCATTACATCCATGCATATCTTCTTGTCAATG 2357008 30 100.0 36 NNNNNNNNNN .............................. TCAGATTGATAGTGAAAAGAAGGAGGATAGTTAATA 2357074 30 100.0 35 NNNNNNNNNN .............................. ACGTCAAGGATGGTTGCCTTGCTAATAGAAGCTGT 2357139 30 100.0 38 NNNNNNNNNN .............................. TTCTAAAATCTCCTTTCTGTAACTTTCTAATTATATTG 2357207 30 100.0 37 NNNNNNNNNN .............................. GCCACAACAAACCTATCAGGAACAGCAGAAATCTTCC 2357274 30 100.0 36 NNNNNNNNNN .............................. TAGGTTTTGTATTGTTTGTAATACTGTTAGAACTGT 2357340 30 100.0 35 NNNNNNNNNN .............................. GCAACAGGATCGAAAGCATAAGAAACACTAGCAAA 2357405 30 100.0 37 NNNNNNNNNN .............................. CCTGATTTTGCTTGTCGTTAACATGGTTAAAGGGAGG 2357472 30 100.0 38 NNNNNNNNNN .............................. CTCATAACCTTATAGGCATAAGTGCTGAATGTAAACCC 2357540 30 100.0 36 NNNNNNNNNN .............................. TGATTTCAACCACGAGGAATTCCATAGGCATTACTG 2357606 30 100.0 35 NNNNNNNNNN .............................. TTGATGTTTGGGAAGGTCTCCATCATGTATCTCAA 2357671 30 100.0 37 NNNNNNNNNN .............................. TACCACCCAGAGTTTGCACAAGGGGAAGGAGGGTTAG 2357738 30 100.0 36 NNNNNNNNNN .............................. TGTGGAACCCTATCCAGTATAACCCAGGTTGTAGAG 2357804 30 100.0 35 NNNNNNNNNN .............................. GGTTAAGGAAATGCAAGAATACGGCTTTGAGATGA 2357869 30 100.0 36 NNNNNNNNNN .............................. CTATTTCCTGGTGGTTGCAGACATGGTGCAATGGGC 2357935 30 100.0 37 NNNNNNNNNN .............................. TTCTTGATTGCTTCAAGTGCCTTGTTGAAAATCTGCT 2358002 30 100.0 36 NNNNNNNNNN .............................. GTGCTGTCTCTGACTTACCTGTTCTGGTGTCTCCTA 2358068 30 100.0 36 NNNNNNNNNN .............................. GTTGGGGCATAAGGCTATAGCTATCACCGAACATGG 2358134 30 100.0 37 NNNNNNNNNN .............................. AACCACCAAAAGTTCCTAAAAAAGAAGCTGGCTATTA 2358201 30 100.0 38 NNNNNNNNNN .............................. GGAAGGTTCAATGAACATGTTGCCTTCAATTTCTGCAA 2358269 30 100.0 38 NNNNNNNNNN .............................. TCAGTGAAGATGGACGAGAACGGGAATATTAGACCTGT 2358337 30 100.0 37 NNNNNNNNNN .............................. ACGTCCCCGGCTGAGACTGGGGTACCGCCTTCTGTAG 2358404 30 100.0 35 NNNNNNNNNN .............................. CAGCAGGAATAAGAGAGGTGAGTGAGCTAAATGAA 2358469 30 100.0 35 NNNNNNNNNN .............................. ATGTCTGTGCCTACCGTGGAAGGACAGGGAGAAGT 2358534 30 100.0 37 NNNNNNNNNN .............................. TGGCTATACGCACGGTGTTCCTCACTGCTTCTACAGG 2358601 30 100.0 36 NNNNNNNNNN .............................. TGAGACTCTCAAGCCTTATATGACCATAGAAAAACA 2358667 30 100.0 36 NNNNNNNNNN .............................. TACTTACCTGTCCACTGATTGCTCCAGTTATTTCAA 2358733 30 100.0 36 NNNNNNNNNN .............................. CCCTACCTGTCCAGGTGGTTGTTTCTGAAGACTCAA 2358799 30 100.0 35 NNNNNNNNNN .............................. GAAGGCAGGAAGGCAAGTGTGATGGAGACTTGGAT 2358864 30 100.0 35 NNNNNNNNNN .............................. TTTGGCACCTATCTCTTCAGCTTTTTCATTCCAAA 2358929 30 100.0 37 NNNNNNNNNN .............................. CACCTATATTACCTCCTTATACTCTGGATATACCAAA 2358996 30 100.0 36 NNNNNNNNNN .............................. TCAGATTGATAGTGAAAAGAAGGAGGATAGTTAATA 2359062 30 100.0 35 NNNNNNNNNN .............................. ACGTCAAGGATGGTTGCCTTGCTAATAGAAGCTGT 2359127 30 100.0 38 NNNNNNNNNN .............................. AGTAAAAGAATTGGAAGGAGGCATAACAATGGACAAAA 2359195 30 100.0 37 NNNNNNNNNN .............................. CATGTGTTATAGCGGAAGGATTGATGTTTGATGAAAA 2359262 30 100.0 38 NNNNNNNNNN .............................. TTGCGTCACACACGACGCAGACAAGAAGAGAATTATTA 2359330 30 100.0 35 NNNNNNNNNN .............................. ATGATGAGATTAGAAAGTTTGTGAAAGAAAATTGG 2359395 30 100.0 38 NNNNNNNNNN .............................. AAATGCTAAATGACATAAAAATTGTACAATAAGGGAGG 2359463 30 100.0 37 NNNNNNNNNN .............................. GAGGAGAATGAGAAACTTGTAGAAGAAAACAAACGGT 2359530 30 100.0 37 NNNNNNNNNN .............................. ACAAAAATACGTCGCCTTGTAAATGCGGGGCAGGAAT 2359597 30 100.0 37 NNNNNNNNNN .............................. ATGAAAACAGGCAGAACGAAATAGCAAAAATATCTCG 2359664 30 100.0 36 NNNNNNNNNN .............................. CCATTCTTCCCATTCTTCCCATTCTTTCTGTCTTTT 2359730 30 100.0 38 NNNNNNNNNN .............................. GAGAAAAAAGCAAGAAAAAGCGGAGTTGCGTAGCGATT 2359798 30 100.0 36 NNNNNNNNNN .............................. CAGATACGTTAAAAGCAAGTGCCAATTTACTAACGT 2359864 30 100.0 36 NNNNNNNNNN .............................. TTGTCCCTCTATATGCACCTGCTGATTACTTGAAAT 2359930 30 100.0 37 NNNNNNNNNN .............................. ATAAAGAATTTATTGGGGAATATTGCCCAGGTTATGT 2359997 30 100.0 36 NNNNNNNNNN .............................. GAGGTAGGAAAAGAAAAGGTAAGATACTTATCCCAG 2360063 30 100.0 37 NNNNNNNNNN .............................. ATACGTCCAGGCTGTATTTCCAAGAAAGAAATCCCTG 2360130 30 100.0 36 NNNNNNNNNN .............................. CAAAAAAGCGGGCTTTAATAGACGCTACTCTTCTTG 2360196 30 100.0 35 NNNNNNNNNN .............................. CAGCAAATTCTTTATCATAGTTTATATGTTCAACG 2360261 30 100.0 37 NNNNNNNNNN .............................. TATGGTTAAAATGTATTCGTCTGCAAATTTATCTATA 2360328 30 100.0 35 NNNNNNNNNN .............................. GTAAAAGAAGCACTACATGAAGGGATGATACAAAA 2360393 30 100.0 35 NNNNNNNNNN .............................. AAGAAGTGGACTTAAATCATGTTAAAAATACAATG 2360458 30 100.0 37 NNNNNNNNNN .............................. TACATTTACGTAAAGATGATGAAATTGAAATATACAT 2360525 30 100.0 37 NNNNNNNNNN .............................. GCACTTTCTGATATACCTAAAACCTGTGCAGTTTCTT 2360592 30 100.0 36 NNNNNNNNNN .............................. TCAATAGAACAGCGATTAGAAGGAGGGATAGTACAG 2360658 30 100.0 38 NNNNNNNNNN .............................. ACCAACCTTACTGAAGCCCGGTGCTGAAAAAATTTTAA 2360726 30 100.0 36 NNNNNNNNNN .............................. GTGGAAAGTTGGCAGGTGCATAGCCAGTCATATGGG 2360792 30 100.0 37 NNNNNNNNNN .............................. ACAGTGTGGATACCCTGCTGGCACCGTTCGTAAGAAT 2360859 30 100.0 36 NNNNNNNNNN .............................. AATCACTTAGCGTTCTGATATAATGAAGTAGGATGG 2360925 30 100.0 37 NNNNNNNNNN .............................. TCTTCGGCTATCCCCCATCCATACCCCTCAATGTACA 2360992 30 100.0 37 NNNNNNNNNN .............................. CTGCTTTGTGTAATTGCTTCATAGATTCCATATTCAT 2361059 30 100.0 36 NNNNNNNNNN .............................. TTTTAAGAGAAGCTTCAATCATTGAGGAAGTAGACT 2361125 30 100.0 37 NNNNNNNNNN .............................. GATTAATGAACATGGACAAAAAAGCAAAAGAAAAAGT 2361192 30 100.0 35 NNNNNNNNNN .............................. CGAATTTGATGCCCGTTCCAATTTTCAATCTTTAT 2361257 30 100.0 37 NNNNNNNNNN .............................. CATCAAAACTAACCCATGGCGTTGTTACGCATACTGG 2361324 30 100.0 35 NNNNNNNNNN .............................. TCCATATATCTTCTGTTTTCCAATCATAAATTGGA 2361389 30 100.0 36 NNNNNNNNNN .............................. CAAAAGCTTGTCATTCAATCAAACAAAAAATCAATA 2361455 30 100.0 38 NNNNNNNNNN .............................. TCTTTTAGATTGTTTGATATAAAATTAATTGCTCCTTT 2361523 30 100.0 38 NNNNNNNNNN .............................. GGTATTACTCAATCCTCTTTGGGGAGCAGTAGGAGCAG 2361591 30 100.0 38 NNNNNNNNNN .............................. TTTCATGAATAGATTTCCCTTGCATGTACATTAAGTCA 2361659 30 100.0 35 NNNNNNNNNN .............................. CATCCACAACAATATATCTATCATTTTGTTCATCA 2361724 30 100.0 37 NNNNNNNNNN .............................. AATAATAGAAAGAGGTTCAGGATTGACAGTTCATATA 2361791 30 100.0 36 NNNNNNNNNN .............................. AGAAATTAGATGCAATTGGTAATGAAAATTCATAAA 2361857 30 100.0 36 NNNNNNNNNN .............................. CCTGGATATGGGGCTTGGTAAAACCTTTGTTGGAAG 2361923 30 100.0 37 NNNNNNNNNN .............................. CCTGAAAGCAGTGATTTATTTGAACAAAGCAAGAAAC 2361990 30 100.0 35 NNNNNNNNNN .............................. GAAAGATGAAGATTTATATTCTTTCAGGAAGCGGT 2362055 30 100.0 36 NNNNNNNNNN ................T............. ATGACTTTAAGTTCTTTTGCTGTAATACCTTTCTTC 2362121 30 100.0 37 NNNNNNNNNN .............................. CCAATTTCCTCACACTTCAACTTATATGGAAAGGAAG 2362188 30 100.0 36 NNNNNNNNNN .............................. AAATTGCAAACTTATCAAATAAAAAGGTTGTTCCTT 2362254 30 100.0 36 NNNNNNNNNN .............................. AAAAAATTTCTTTAATGTCAATATTTAGTATTTCAC 2362320 30 100.0 36 NNNNNNNNNN .............................. CAGCAATTATCGGAGAATATATCGTATACCCATCAA 2362386 30 100.0 37 NNNNNNNNNN .............................. GGCTTGCCGTTATTTTGCCAACAATGTTGGCAGCAGG 2362453 30 100.0 37 NNNNNNNNNN .............................. AAAGTAAATATATTTTGATTCGGGTAAACGGCATGGA 2362520 30 100.0 36 NNNNNNNNNN .............................. CTTCTGCCACTTCTTTTTCCTTTACAAGCTTTTGGA 2362586 30 100.0 34 NNNNNNNNNN .............................. ATGTATCCAGTGACGCAAGATTTTTTAGAGAAGA 2362650 30 100.0 37 NNNNNNNNNN .............................. TCTAAAGACAGTTCTTTTACTTCTTCTAACAGCACTC 2362717 30 100.0 38 NNNNNNNNNN .............................. CACATACGTGTTTTGGGTGTTTCTTTATTTCGTGCTAC 2362785 30 100.0 36 NNNNNNNNNN .............................. TGCAAAAAAAGCTGGTTTAAGTCATTCCTATATAAA 2362851 30 100.0 39 NNNNNNNNNN .............................. GATGAAGGACCTCACAAGTGCGGAAGGGCTGGCTTTCTT 2362920 30 100.0 37 NNNNNNNNNN .............................. CATTAGGTACAGAGGTAGAAAAAATGTTCAATACTTA 2362987 30 100.0 36 NNNNNNNNNN .............................. TTTAAAATCGTATAAAGAGCTTATTGAGCTGTATTT 2363053 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 220 30 36 GTTTCAATTCCTTATAGGTAGGCTAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.70,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [87,182] Score: 0.18/0.18 # # Final direction: R [0.37,5.09 Confidence: HIGH] >NC_010321 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 131248 30 100.0 35 NNNNNNNNNN .CGGCAT.GGAGT................. AGGTCAAACCTGGGGCAAAGACTTACGACGGGAAA 131313 30 100.0 36 NNNNNNNNNN .............................. TGCCATCACCTATCATACTATCTCCATCCACTCTTA 131379 30 100.0 37 NNNNNNNNNN .............................. CCATCTCAGACCGTGCAGAAAGCAACTTGTCTAATTG 131446 30 100.0 36 NNNNNNNNNN .............................. AACTATGACATATAAAATTTAATGTGCCTTGTGGAG 131512 30 100.0 37 NNNNNNNNNN .............................. CCAGTACCGTAGCTTCCTACAAATATGATGCCTACTC 131579 30 100.0 38 NNNNNNNNNN .............................. TTTCCCTCTATATATTCAACAGGTTCAGGATATTTACG 131647 30 100.0 37 NNNNNNNNNN .............................. TTGAAAGTAAATTAGGAGAAAGATTTCGTGCAAGAAG 131714 30 100.0 37 NNNNNNNNNN .............................. CGTGTTCCCAAAAAAGTGGACATGGTTCTTGTTCTTC 131781 30 100.0 39 NNNNNNNNNN .............................. ATTATTTGCTCAATAGCCGAGCAGAGAACGGATTTGCCT 131850 30 100.0 36 NNNNNNNNNN .............................. TTTCCTCTCGGACCGCCCCATCCATTACAGCAGCCG 131916 30 100.0 38 NNNNNNNNNN .............................. CATGCTCTCTCTGTAGTTGTGCGGCTGTTCCCGGTGGG 131984 30 100.0 35 NNNNNNNNNN .............................. TCTACCAATGCATGGACGATATGCAGGACACCTGG 132049 30 100.0 36 NNNNNNNNNN .............................. GCGAACCCATACTGCAAAGCCTCTTCTGCTGTCATC 132115 30 100.0 37 NNNNNNNNNN .............................. ATGCTTCCATCTTTTTTCGCCTCCTCAGTATCTTTCC 132182 30 100.0 37 NNNNNNNNNN .............................. ACAATAAGGCGATCCCGGCGCTGATTGATTTAAACGG 132249 30 100.0 36 NNNNNNNNNN .............................. GTTAATACGGCCGGCATGTTTGTCTTGCGAAGCACG 132315 30 100.0 37 NNNNNNNNNN .............................. CCTCGGACGATGCTAAAGCAACTCTTTCACCTTGCAG 132382 30 100.0 40 NNNNNNNNNN .............................. CAGAAAAGTGTATCATTGTGTATCATGTTTCTTGAGTTTG 132452 30 100.0 37 NNNNNNNNNN .............................. CACATTTCAGCAATTCTCGATACTATTGCATCGCCTG 132519 30 100.0 37 NNNNNNNNNN .............................. GAAGAAGAGGAATAGAGAGGGTTTACTCCCTCTCTTC 132586 30 100.0 37 NNNNNNNNNN .............................. TTTTGTCCGAGGGACTTGGTCTAAACGTGGACAGCGA 132653 30 100.0 36 NNNNNNNNNN .............................. AGATCTTTTTGAGGACAATTACCTTTCCGTCTATAT 132719 30 100.0 38 NNNNNNNNNN .............................. TGTGTATTACATTGCCTTGTTTATCAAGTGGTTGTATA 132787 30 100.0 38 NNNNNNNNNN .............................. TTACGTGCGCAAAGATGGCAGCATCTTCCGAGGCAGAG 132855 30 100.0 35 NNNNNNNNNN .............................. TTTTATTTCCTCCTCCTTAATTTTTTTATTTTCCC 132920 30 100.0 37 NNNNNNNNNN .............................. TTTTCTATTGCCCACTCCGAAAGCATTGCTTTTCCCG 132987 30 100.0 38 NNNNNNNNNN .............................. TTTTATCGGACTTTGTGATATAATATAAGTATGATATG 133055 30 100.0 37 NNNNNNNNNN .............................. TCCAACCATCCGTTGTGTAACGGATTGGATAACCTTC 133122 30 100.0 37 NNNNNNNNNN .............................. ATCCTTTGAGGAAAGTTGTTGAGCTATTGACTTATAG 133189 30 100.0 37 NNNNNNNNNN .............................. TATAGCTGCTCTTGTTTTAAACGTTCTTCCTAACAGT 133256 30 100.0 36 NNNNNNNNNN .............................. CCCCATTTAATGTAGTATCCGTTTTTGTAAATCTTC 133322 30 100.0 38 NNNNNNNNNN .............................. AGAAATTTCTCATCTTCTCTGGAACATCCAAAGCTGCG 133390 30 100.0 38 NNNNNNNNNN .............................. AAGGCAAATACAGGATTGCTTATGGAAAGATTGAGCAG 133458 30 100.0 39 NNNNNNNNNN .............................. TAGAAAGAGCAGAGGGCTAATGCCCTCTCTCTAAAAAAG 133527 30 100.0 37 NNNNNNNNNN .............................. TTTTTAAGATTTTCTGTTTTATCTTTTATCTTGTCTA 133594 30 100.0 38 NNNNNNNNNN .............................. GCCGCTAATTTGTGCTCTTCAGCTTTGAGCTCATTAAG 133662 30 100.0 37 NNNNNNNNNN .............................. TAAAGTCGCGATACTATAGCCTCTGCTGTTTCAACGT 133729 30 100.0 36 NNNNNNNNNN .............................. AAAGCCTCTAATGCACCTTTGAATCCCTTCATTTTG 133795 30 100.0 36 NNNNNNNNNN .............................. CTGTGATACTGTTGCCGCTTACTGCGGTTATGGTCA 133861 30 100.0 37 NNNNNNNNNN .............................. AGTATATAAAGAAGGTTTTGGAAGTTTCTAATTTAGG 133928 30 100.0 36 NNNNNNNNNN .............................. TTGGTTGTGATAATTCAGCTAACTTCTTTTTTGCTG 133994 30 100.0 36 NNNNNNNNNN .............................. AGCAGCCTGTGAAGCTCTGATATAAATTTGTCTTGT 134060 30 100.0 36 NNNNNNNNNN .............................. AGCTAAAACTACCCGATATGCTAAAATGCGGTAATG 134126 30 100.0 35 NNNNNNNNNN .............................. AGCTTTGTTGAAAATTCTTGTACCAATGCTGGAAG 134191 30 100.0 38 NNNNNNNNNN .............................. CGCAAGATGTGGAAGATTTAGAGGATATCGAAGGAACA 134259 30 100.0 37 NNNNNNNNNN .............................. CAGAGCCAGGGAAATTGGATGTAGGCAGGATGCCTGC 134326 30 100.0 37 NNNNNNNNNN .............................. CACTTACGCGCATGCGGTAGCTCCTGATCATGTTCCG 134393 30 100.0 40 NNNNNNNNNN .............................. ATATCTTTTCAGCTTCAGCAACAGGATCGAAAGCATAAGG 134463 30 100.0 1 NNNNNNNNNN ...........C.T.T.TTAA....TG... NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 49 30 36 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-1.30,-1.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [11-9] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [259,293] Score: 0/0.18 # # Final direction: F [5,0.78 Confidence: HIGH] >NC_010321 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 134784 30 100.0 36 ATTTTTCTAT .............................. TGCCGTCTGTGCCTTGCGAATATTCTACGTCGCCGA 134850 30 100.0 36 ACGTCGCCGA .............................. TGTTGAAGACATATATCTGAAAGTTGTATCAAAAAA 134916 30 100.0 36 TATCAAAAAA .............................. AGCTCTTCTACTGCTCTTCTTCCTCTGCGATAAACA 134982 30 100.0 37 GCGATAAACA .............................. ACAAAACAACTCGCTGGGATAGAACAATTAGAAGAAA 135049 30 100.0 37 TTAGAAGAAA .............................. TAGGCTTCTAGCGTTACACCAATAGGCTCTGTCGGGT 135116 30 100.0 38 TCTGTCGGGT .............................. AGGAGTTAATACTGCGACTGCACTTAAAACAGCCATAA 135184 30 100.0 36 ACAGCCATAA .............................. CTTAGCAGCGTTGATACATGCCTAATACCATCAAGG 135250 30 100.0 37 ACCATCAAGG .............................. AGTCCATATCGCCATTTACATAGTAGACTACTTCTTT 135317 30 100.0 35 CTACTTCTTT .............................. GAGCAGAAATGGAATTGCATGGCTATGCAGCAGAA 135382 30 100.0 37 TGCAGCAGAA .............................. TTAAAAAGCCTGCCCTTTTGCAGTTAATAGTCTCTTA 135449 30 100.0 36 TAGTCTCTTA .............................. TAGGCAATGTTTATGCATCCGAGCTAGGGCTATCCT 135515 30 100.0 GGGCTATCCT .............................. CCGCCACATACATCCAAACAGGAAGTACCAGCATGG ========== ====== ====== ====== ========== ============================== 12 30 36 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-1.30,-1.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [429,153] Score: 0.18/0.18 # # Final direction: F [5.45,0.37 Confidence: HIGH] >NC_010321 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 137241 30 100.0 37 AAAAGATAGC .............................. ACTGTCCCTCAATTTCCTTGTTTTCCTCCTTAAGCTT 137308 30 100.0 36 CCTTAAGCTT .............................. TAAACCGCCAGAATGCTGAAGCCATATTCCTCGCAC 137374 30 100.0 36 TTCCTCGCAC .............................. ATAACTCCGTTTGGTTTTTCGGGGTTTTGCTGAATA 137440 30 100.0 37 TTGCTGAATA .............................. ATTATCTCTTGAAGCGCCTTTGCAGTGTCGAATTTTT 137507 30 100.0 37 TCGAATTTTT .............................. TTTGGAATTCCTTTAGGCGCTCGAACTCACCCATCTG 137574 30 100.0 38 CACCCATCTG .............................. AAATACTCGCCGGCGCGAACCTTAATCTTCACCGGCCA 137642 30 100.0 37 TCACCGGCCA .............................. CCCATAACCTTGGGAACACAAATTATATGGTGAACAT 137709 30 100.0 37 TGGTGAACAT .............................. AGAAACTCGCAGAACCCGGCCAACCTGCTGGCTATAG 137776 30 100.0 36 CTGGCTATAG .............................. ATAAAAAAGTTCCCCGTTGTTACCTCATGTTGCTGT 137842 30 100.0 37 ATGTTGCTGT .............................. CAAGATAAATGGGATAGCCTTGTTGAGGCAGCAAAAA 137909 30 100.0 36 GCAGCAAAAA .............................. CCAACGCTCCCGGTGGTCTTGCGCTGTTCTGGAGTA 137975 30 100.0 35 TTCTGGAGTA .............................. ATGTCTAACCTATCAAGTACGTCTTTTATTGCTTG 138040 30 100.0 TTATTGCTTG .............................. TGGATAGCAAAGGCAAGTGCAGAACTGGATAAAAAGA ========== ====== ====== ====== ========== ============================== 13 30 36 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-1.30,-1.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [65.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [326,154] Score: 0.18/0.18 # # Final direction: F [5.45,0.37 Confidence: HIGH] >NC_010321 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 139765 30 100.0 37 ACGCAATAGC .............................. GATAGCCTTCAGCTATTAACTTTGCCGCTTCCAATTG 139832 30 100.0 36 CTTCCAATTG .............................. GCTGGTGCTTATTATTGGAAAGGATATAAACAAGCA 139898 30 100.0 35 TAAACAAGCA .............................. CGCTGTCGTCTTTGTTAAAGGACCTGTACCCTGCA 139963 30 100.0 38 GTACCCTGCA .............................. AGATATTGTTCAATATTGCATTTATCTCCGCTTCGCTT 140031 30 100.0 37 CGCTTCGCTT .............................. TGTAGAAAATGTCAAAAAACATCAAAAAGGAGGTGTG 140098 30 100.0 35 AGGAGGTGTG .............................. AGTAAATACGGGAACAGAAGCAGCACCCGTGTGGA 140163 30 100.0 36 CCCGTGTGGA .............................. CATTGCCACTACTTGCAGCAGCAGGAGCATCTATAA 140229 30 100.0 37 GCATCTATAA .............................. CGTAGAAATAGACCCACCATTTCATCCAGACACACAC 140296 30 100.0 35 AGACACACAC .............................. CTGATTGAGTACTAGGGAGGGAGAGAGATGTATCC 140361 30 100.0 37 AGATGTATCC .............................. AGCGCTTGAGGATGCATACATGAATAATACAATTTTA 140428 30 100.0 37 TACAATTTTA .............................. CGCCCAAAATGGCGCTTAAAACGGCTGCAAATTTGTC 140495 30 100.0 37 CAAATTTGTC .............................. CCAGCCTGTAATGCAGGGTCGCCTACAAATCCGACGT 140562 30 100.0 38 AATCCGACGT .............................. TTCTTTAGATATACTTAAAAGCAATGTAGAGAAAGGTG 140630 30 100.0 37 GAGAAAGGTG .............................. CGAGTGAAAAGATGATACCATGTCGCTTTGAAATGAG 140697 30 100.0 35 TTGAAATGAG .............................. TCCCTAGTAGTTTAGCCATATCAGCTTGTTTTAAA 140762 30 100.0 36 TTGTTTTAAA .............................. AGCTCTTTCATTAATTTTGCAGCTTTGTCTGTCGGA 140828 30 100.0 36 GTCTGTCGGA .............................. TTGCCAAGCTGTTTTGCTAATTTGCTCATTTTTGCC 140894 30 100.0 37 CATTTTTGCC .............................. TCGATATAATAGCTCTAAACGTTTGGCTTTGCTTTGT 140961 30 100.0 40 TTTGCTTTGT .............................. ATATCCTCGCCAGATACACATTGCTCGCTAACATACAGGC 141031 30 100.0 36 ACATACAGGC .............................. TAACGCAGACGTGGGAGGTTGCCGTGGATTCGGTTG 141097 30 100.0 37 GATTCGGTTG .............................. TCATAATCTATCAAACCGCTTGCTATTGCAAGCATGA 141164 30 100.0 36 GCAAGCATGA .............................. ACATTGTTTGTAGTTTTGGTATGTTCTGTTGTATAC 141230 30 100.0 39 TGTTGTATAC .............................. TATCATTCCAACTACCAACTTTTGTTAAATAATATTCTC 141299 30 100.0 TAATATTCTC .............................. TATGCTGCAT ========== ====== ====== ====== ========== ============================== 24 30 36 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-1.30,-1.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [50.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [324,222] Score: 0/0.18 # # Final direction: F [5,0.64 Confidence: HIGH] >NC_010321 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 962976 30 100.0 36 ATTATAATGG .............................. GATAAAGATTGGCAAATAACTGTGATGTAAGGTTAC 963042 30 100.0 37 GTAAGGTTAC .............................. GCACAAGAAAAACCTGTACAAGCAGGTAACTGGATTG 963109 30 100.0 36 AACTGGATTG .............................. TTTGACGTTGTTTCTTGCTCCACTTCTTCTTTTTGC 963175 30 100.0 39 TTCTTTTTGC .............................. AAGGCTGAACTTGAACAATCTGAAGTGAAGTTGGTACAA 963244 30 100.0 39 GTTGGTACAA .............................. TTATATTGAAATTGACTGGAATTTTAGAGAATTTTACCT 963313 30 100.0 37 AATTTTACCT .............................. AAATATGCTTGTACAACTTTATTGATGAGTTCTTGAC 963380 30 100.0 36 AGTTCTTGAC .............................. AAAAATTGGACAGCACAAGGACTAAAAACGAGAGAA 963446 30 100.0 36 AACGAGAGAA .............................. ATAAACTTTTTTACGTCTTGCAGTTTCATTTTTACC 963512 30 100.0 36 CATTTTTACC .............................. AGCAATTGTACAGAGCACACTCAAAGAAAAAAAAGA 963578 30 100.0 39 AAAAAAAAGA .............................. ATTCCGCTTCTCTTAAAAAACTTTTGTGCGGAAAAATGT 963647 30 100.0 37 GGAAAAATGT .............................. CCGGCATCCGGGCCACCTCCCTGTTACTGTTACTCTC 963714 30 100.0 36 TGTTACTCTC .............................. TGGGACCACTACTATGAGCTGATAGAATACGACAAA 963780 30 100.0 36 ATACGACAAA .............................. ATGGGAAGCATTCGTATATTTCGTAGGTTTTGCAAT 963846 30 100.0 35 GTTTTGCAAT .............................. AGGTGGGAGAAAGACAACAAAAGCAATGCACTTGC 963911 30 100.0 36 ATGCACTTGC .............................. GCATTAAAAATTGCCAAACTGTTGAATGAATATGAG 963977 30 100.0 37 TGAATATGAG .............................. ACACGCCACCCAAAACACAGTAACCACAATTGCAAAC 964044 30 100.0 38 AATTGCAAAC .............................. TGGTACTTAGGCTAACAAAAATGCCGGCCGTATTAACA 964112 30 100.0 36 CGTATTAACA .............................. AATTATTGCAGAGGCAATGGCAAAAGGCTTAAGCAA 964178 30 100.0 GCTTAAGCAA .............................. ATGCGGTGATGGCTTATGAGGATACGTATATTGCGTAG ========== ====== ====== ====== ========== ============================== 19 30 36 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-1.30,-1.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [81.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [199,155] Score: 0/0.18 # # Final direction: F [5.27,0.37 Confidence: HIGH] >NC_010336 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1788023 36 100.0 29 NNNNNNNNNN .................................... CTCATTTAGAAATTCAATTTTTAAATTCT 1788088 36 100.0 27 NNNNNNNNNN .................................... AACCCTAAAGATTCTAACGGTGTTATT 1788151 36 100.0 27 NNNNNNNNNN .................................... GAAATGGTGGAGTAATGCCAAGCAACG 1788214 36 100.0 28 NNNNNNNNNN .................................... GGACTATTCTTTTAATGTTTGATACATA 1788278 36 100.0 30 NNNNNNNNNN .................................... ACTTGATACTATATGTACGAACATTTAGAA 1788344 36 100.0 1 NNNNNNNNNN ......A...A.....A....CTGTTAA.GTAG.T. NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 6 36 28 GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [141,89] Score: 0/0.18 # # Final direction: F [0.41,0 Confidence: MEDIUM] >NC_010337 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 602509 29 96.6 35 CCATCAGATT ..............A.............. CCAATAAGGGAAGACGGGGGTTTCTCGCTGCCTTA 602573 29 100.0 35 CGCTGCCTTA ............................. GGGAATGGGGTGACCTGTCTGCCGCCCAGTATGTC 602637 29 100.0 33 CCAGTATGTC ............................. CTCAAAGTGCCCACCGTATCGTTCCGCTTCAGG 602699 29 100.0 32 CCGCTTCAGG ............................. GTTTGAGGAGGTTGTCGAGGTCAAGTGCAAAT 602760 29 100.0 35 AAGTGCAAAT ............................. TACTGCTCCACCTCGGGCGTCAATCCTTGCGCTTC 602824 29 100.0 32 CTTGCGCTTC ............................. ATAAATGGGCCTCATGAAGGATCGTTTAACCT 602885 29 100.0 34 CGTTTAACCT ............................. GGCAGTCCACTAACCACAGAGCATTCTGTCTTTA 602948 29 100.0 32 TCTGTCTTTA ............................. TCCCGTCCAAACTTTCGGTCGAATCCTACTTG 603009 29 100.0 33 ATCCTACTTG ............................. GTTGCCGTTGAGAACAAGGTTGGCGAGGGCTTC 603071 29 100.0 32 CGAGGGCTTC ............................. GGACCCTTCCCTTCCGTCTCCTTGCCCTCCAG 603132 29 100.0 32 TGCCCTCCAG ............................. GCCGGGCCGGTGAATCGGCCGTTGCTGGATGT 603193 29 100.0 35 TGCTGGATGT ............................. GCGAACAACCGGGCTGAGGCGGGGTTTGAAGTCTA 603257 29 96.6 32 TTGAAGTCTA ...........A................. CCGAAAGTCCCAAAATCTACAACATCGACCTT 603318 29 100.0 34 CATCGACCTT ............................. TTCAAAGGGTAAATGGGCCGGCAAGCCACTACTC 603381 29 100.0 34 GCCACTACTC ............................. GATTATCCCGACAACCGTTCCGCCGGTTCCCGAG 603444 29 100.0 33 GGTTCCCGAG ............................. GCTGCTTTCCTTCCCCGGCCGCTAGCTTTGCGA 603506 29 100.0 33 AGCTTTGCGA ............................. GGTACGAGACTTGTTCTCGACCTTCGACGAGGA 603568 29 100.0 TCGACGAGGA ............................. ACTAGAAAAA ========== ====== ====== ====== ========== ============================= 18 29 33 CGGTACACCCCCGCGCACGCGGGGAACAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.40,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [296,214] Score: 0/0.18 # # Final direction: R [0.37,0.41 Confidence: LOW] >NC_010337 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 269931 37 100.0 36 NNNNNNNNNN ..AGACGG..T.......................... TTGAACAGGAAGAAGGGGTGGGCCCCAACCGGGAGC 270004 37 100.0 39 NNNNNNNNNN ..................................... TTATCCATCGTTCCATCATTCATTCCGCCTCCCTGTACC 270080 37 100.0 37 NNNNNNNNNN ..................................... AGCGGCCGCCCGGTAAGCCCCCGGTTGCTGCCGTAGG 270154 37 100.0 38 NNNNNNNNNN ..................................... TGACAGCAAGTATGAAAGTGGTGGTGGAGATCGCTTTT 270229 37 100.0 37 NNNNNNNNNN ..................................... CTCAATCTGCTACCGAATAGCCCTTTTTCGGCTTTAC 270303 37 100.0 38 NNNNNNNNNN ..................................... CATTGTCAGCCATTACACCACTTCCCCTCTGGGTTAAA 270378 37 100.0 38 NNNNNNNNNN ..................................... GATGGCATAGGTTCCCGTGGCTTGCGTGGGCACATGGG 270453 37 100.0 37 NNNNNNNNNN ..................................... TCTCTCTCTTAGCGTTAATCTTCTCGACCAAAGACTT 270527 37 100.0 36 NNNNNNNNNN ..................................... GCCCCGGCCCTCACGCTGTTTAGTAGGGATCCGGTT 270600 37 100.0 39 NNNNNNNNNN ..................................... GCGTTGGAGGATACCTCCTCGATAGACTGAGAAATCCTT 270676 37 100.0 40 NNNNNNNNNN ..................................... TGATTAAAGACCCCAAGGGAAAGGTACTTATTGATACTAA 270753 37 100.0 35 NNNNNNNNNN ..................................... GATCTTGGACACTCGTGCGGATCATTACCTTGAAT 270825 37 100.0 37 NNNNNNNNNN ..................................... GTTGCGCCCGGCAGTTCCCTCAGGTCTGCCATGCAGT 270899 37 100.0 38 NNNNNNNNNN ..................................... CGCGATTATTCCATACTTGTCTCTGAGCATCTGATACC 270974 37 100.0 37 NNNNNNNNNN ..................................... TCGTTGATTTTCTGGTCGAGATGCCACAGTCGCTGTT 271048 37 100.0 38 NNNNNNNNNN ..................................... GTATTCTGCCGTCCTTGAGCACGATGAAATTCCCGCCG 271123 37 100.0 36 NNNNNNNNNN ..................................... AGTAATCCCCGGTGTTCGTGGCCGCCGAGCGAGCCC 271196 37 100.0 1 NNNNNNNNNN ..................................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 18 37 37 CTTTCAATCCCCTACATAGCGGGTCATCCAGTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:51.35%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.10,-4.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [141,199] Score: 0/0.18 # # Final direction: R [0.27,5.28 Confidence: HIGH] >NC_010371 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =========================== ====== 45952 27 100.0 33 ATAGATAAAA ........................... ACTTATTCGATTCTTCATTTTTTTAGTTCTCTT 46012 27 92.6 34 TAGTTCTCTT ..............T.T.......... ACTTATTGTTGAAATTATCTTTGTTTTTAGAGTT 46073 27 88.9 35 TTTTAGAGTT ..A..T....................C ATGCTGTGTCAAATGCAAAAGAAGATGTTTTAAAT 46135 27 100.0 34 TGTTTTAAAT ........................... ACATAAAGTTATAATTATAATCTTTTTTTATAAC 46196 27 96.3 34 TTTTTATAAC ..............T............ ATCATAGATACTTTTTTCGCTCCTTGAAATAATC 46257 27 92.6 TGAAATAATC ..A...........T............ CAAAGATAAT ========== ====== ====== ====== ========== =========================== 6 27 34 AGGAACACCCCCGCATGTGCGGGTAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-5.80,-6.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [579,120] Score: 0.18/0.18 # # Final direction: F [0.96,0 Confidence: HIGH] >NC_010338 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 1704207 19 100.0 35 NNNNNNNNNN .....T.....T...AC.. AGGCCGGCAGCGCCGGCTCGGCCGAGATCAACATC 1704261 19 100.0 38 NNNNNNNNNN ................... GCACCCAGGAGATCGGCGGCGACCTGGAGATCAACATC 1704318 19 100.0 38 NNNNNNNNNN ........C....G..... CCGCCGCCAGCGTCAATGGCAAGCTCGAGGCCAACATC 1704375 19 100.0 41 NNNNNNNNNN ................... CCGTCTCCGGCGGTCATTCGCGGTCGGTCGAGGTCAGCGTC 1704435 19 100.0 38 NNNNNNNNNN ATG................ ATTTCGACGGCGTGGCCGACAATGTCGAAGTGTCGGTG 1704492 19 100.0 38 NNNNNNNNNN .....T........T...C GCGTGGCCAGGGCCACGGGGAATGTCCGCAAGTCGGTG 1704549 19 100.0 1 NNNNNNNNNN .................G. NNNNNNNNNN ========== ====== ====== ====== ========== =================== 7 19 38 GCCGGCTCGGGCGACGTCA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [2,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [4-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [38.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [725,106] Score: 0.18/0.18 # # Final direction: F [0.59,0.27 Confidence: MEDIUM] >NC_010379 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 38 19 100.0 47 NNNNNNNNNN .......T........... GCATTGAAAGCATAAAAAATAAACTAGAAAAATATAAGTTTAACTTG 104 19 100.0 45 NNNNNNNNNN ................... GTTTAAAGATTATAAGTTAAGGATATGTTTTTAATGCTTAACTTT 168 19 100.0 44 NNNNNNNNNN .G................. CTATTGATTGACAAAAATTTTTAGTTTTATTTAAGCTTAACTTT 231 19 100.0 47 NNNNNNNNNN ........G.......... CGGAGGTTTTTGTAATGCTAAATCCTATAAAAAACAAGTTTAATTTG 297 19 100.0 48 NNNNNNNNNN ................... CTAAATAAGGAACCTACTAATTTTTTATTGTTATTAAAGTTTAACTTA 364 19 100.0 39 NNNNNNNNNN ..T...............G CCCTCCATTTCTAAACTATAATTAATTATGCTTAACTTT 422 19 100.0 1 NNNNNNNNNN .G...AC....C....... NNNNNNNNNN ========== ====== ====== ====== ========== =================== 7 19 45 TACATTAGATGTATTTAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:84.21%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [28.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [39,454] Score: 0.18/0.18 # # Final direction: R [0.41,0.45 Confidence: LOW] >NC_010379 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 512 28 100.0 43 NNNNNNNNNN ............................ ATTCCGTTTTTTTAAAATAGGAAATTTTTAATAAAAAAAGACT 583 28 100.0 38 NNNNNNNNNN ................A........... CACGCATATTTGAAATATGGAAAATGGAGTAAGATGGA 649 28 100.0 35 NNNNNNNNNN ........A..T.......A........ CTACCGATTTATAAAAATTTTTAGTTTTATTTAAG 712 28 100.0 34 NNNNNNNNNN ..........G....G............ AACTTTCAGAAGGCATATTTTCTTAAATATTTGG 774 28 100.0 37 NNNNNNNNNN ................T........... CGTTGTAAAATATGTAGGTGGAGCTAAGGAGTGTAAG 839 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 6 28 37 TTTAACTTCTACATTAGATGTATTTAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:82.14%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.80,-1.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [78.3-80.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [513,28] Score: 0.18/0.18 # # Final direction: F [0.59,0.37 Confidence: LOW] >NC_010376 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 79845 36 100.0 30 NNNNNNNNNN .................................... TTTATCCTCGTCAAACTCTTTTCCACACAC 79911 36 100.0 30 NNNNNNNNNN .................................... TATGGTGGAGATGAGGAGTATCGTACGAAC 79977 36 100.0 30 NNNNNNNNNN .................................... AGTACGAATTTGGATTTACTCCAAACGACG 80043 36 100.0 30 NNNNNNNNNN .................................... GGATTAGGTGAACATACAATTACAGTTACT 80109 36 100.0 30 NNNNNNNNNN .................................... TCAAACTTGATGAGGTCAAGGATTTGATTT 80175 36 100.0 30 NNNNNNNNNN .................................... ATTTCTACACGATTTGTTTCATCATTTGAA 80241 36 100.0 30 NNNNNNNNNN .................................... TTGCTATTTTTGTTTTAATCTTTAGTTCCC 80307 36 100.0 30 NNNNNNNNNN .................................... ATACTGATTAATCTGAATGGTTTGAGTGAT 80373 36 100.0 30 NNNNNNNNNN .................................... ATTGTTTACAAGCTCCCGAATATAAGCTTG 80439 36 100.0 30 NNNNNNNNNN .................................... TGGTTATAAAAAACCGAAAGCAGAAGTGAA 80505 36 100.0 31 NNNNNNNNNN .................................... TTTGATGACTACGAATTGCAAGCAGTGTATA 80572 36 100.0 31 NNNNNNNNNN .................................... AATGATAATTTAAAAGAATACTTAATTTATA 80639 36 100.0 30 NNNNNNNNNN .................................... GAGTAAAACATAAAAAGATTGAGTATGTTG 80705 36 100.0 30 NNNNNNNNNN .................................... CTGAAAGTTTAGGATTGACGTTCGAGGACA 80771 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 15 36 30 GTTTGAGAATGATGTAATTTCATATAGGTATTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.10,-0.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [71.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [56,83] Score: 0/0.18 # # Final direction: F [0.64,0 Confidence: HIGH] >NC_010381 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 104878 32 100.0 34 NNNNNNNNNN T..CA.CC.ACGC.CT..ACCT.......... GAAAGCTAACTAGACACCCTATAAGCATGTACCA 104944 32 100.0 33 NNNNNNNNNN ................................ GCAAGATTTATAATAAGAGATATAAATGGTAAT 105009 32 100.0 35 NNNNNNNNNN ................................ TGCAGCAAATTAATGAAATGTTATCAGCCCATATA 105076 32 100.0 34 NNNNNNNNNN ................................ CGTTAGCTTATCCTCTGCTTTGATTTTTTTTAAT 105142 32 100.0 1 NNNNNNNNNN ................................ NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 5 32 34 ATTTCAATCCACGCTCCCCTAAGGAGAGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [9,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.50,-5.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [60.0-85.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [763,169] Score: 0.18/0.18 # # Final direction: R [0.55,5.55 Confidence: HIGH] >NC_010400 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 2141093 20 100.0 64 NNNNNNNNNN .................... GTCACTATCAGAGTCGCTGTCAGAGTCTGAGTCACTATCGGAATCAGAATCAGAGTCACTGTCG 2141177 20 100.0 58 NNNNNNNNNN ..A..A.............. GTCGCTATCAGAGTCGCTGTCTGAGTCTGAATCACTGTCGGAATCAGAGTCACTGTCG 2141255 20 100.0 58 NNNNNNNNNN ..A..A.............. GTCGCTATCAGAGTCGCTGTCTGAGTCTGAATCACTGTCGGAATCAGAGTCACTGTCG 2141333 20 100.0 52 NNNNNNNNNN ..A..A........G..... GTCGCTATCAGAGTCGCTGTCTGAGTCTGAGTCACTATCGGAATCAGAGTCG 2141405 20 100.0 52 NNNNNNNNNN ..A..A.............. GTCACTATCAGAGTCGCTGTCAGAGTCTGAGTCACTATCGGAATCAGAGTCG 2141477 20 100.0 40 NNNNNNNNNN .....A.............. GTCGCTATCAGAATCTGAGTCACTGTCGCTATCAGAGTCG 2141537 20 100.0 28 NNNNNNNNNN .................... GTCGCTATCAGAATCAGAGTCACTGTCG 2141585 20 100.0 58 NNNNNNNNNN .................... GTCGGAATCTGAGTCACTGTCGCTATCAGAGTCTGAATCGCTGTCGCTATCAGAGTCG 2141663 20 100.0 34 NNNNNNNNNN .................... GTCACTATCAGAGTCGCTGTCTGAGTCTGAGTCA 2141717 20 100.0 40 NNNNNNNNNN ..A..G..A..A......GA GTCACTGTCGCTATCAGAGTCGCTGTCTGAGTCTGAGTCA 2141777 20 100.0 22 NNNNNNNNNN ..A..G..A..A..G..G.. GTCTGAGTCTGAATCACTGTCG 2141819 20 100.0 34 NNNNNNNNNN ..A..A..A..A..G..... GTCGCTATCAGAGTCGCTGTCTGAGTCTGAGTCA 2141873 20 100.0 22 NNNNNNNNNN ..A..G..A..A..G..G.. GTCTGAGTCTGAATCACTGTCG 2141915 20 100.0 22 NNNNNNNNNN ..A..A..A.....G..G.. GTCTGAGTCTGAATCACTGTCG 2141957 20 100.0 28 NNNNNNNNNN ..A..A..A.....G..... GTCGCTATCAGAGTCTGAGTCTGAGTCT 2142005 20 100.0 46 NNNNNNNNNN GAA..A........G..... ATCGGAATCAGAGTCGCTGTCTGAGTCTGAATCACTGTCGCTATCA 2142071 20 100.0 34 NNNNNNNNNN GAA..A.....ACTG..G.. GTCAGAGTCTGAGTCACTATCGGAATCAGAATCA 2142125 20 100.0 22 NNNNNNNNNN GAA..A.....ACTG..G.. ATCAGAGTCTGAATCACTGTCG 2142167 20 100.0 52 NNNNNNNNNN GAA..A.....ACTG..G.. ATCAGAGTCTGAATCACTGTCGCTATCAGAATCTGAATCGCTGTCAGAGTCT 2142239 20 100.0 58 NNNNNNNNNN GAA..A........G..... ATCGGAATCAGAGTCGCTGTCTGAGTCTGAATCACTGTCGGAATCAGAGTCACTGTCG 2142317 20 100.0 70 NNNNNNNNNN ..A..A.............. GTCGCTATCAGAATCTGAATCGCTGTCAGAGTCTGAATCAGAGTCTGAGTCACTATCGGAATCAGAGTCG 2142407 20 100.0 52 NNNNNNNNNN .....A........G..... GTCGCTATCAGAGTCGCTATCAGAGTCTGAGTCACTGTCGCTATCAGAGTCG 2142479 20 100.0 88 NNNNNNNNNN ..............G..... ATCGGAATCAGAGTCGCTGTCTGAGTCTGAATCGCTGTCAGAATCAGAGTCACTGTCGCTATCAGAGTCACTGTCGCTATCAGAGTCG 2142587 20 100.0 58 NNNNNNNNNN ..............G..... ATCGCTATCAGAGTCGCTGTCTGAGTCTGAATCACTGTCGCTATCAGAATCTGAGTCG 2142665 20 100.0 58 NNNNNNNNNN .................... GTCGGAATCTGAGTCACTGTCGCTATCAGAGTCTGAATCGCTGTCGCTATCAGAGTCG 2142743 20 100.0 76 NNNNNNNNNN .................... GTCACTATCAGAGTCGCTGTCTGAGTCTGAGTCACTATCGGAATCAGAATCAGAGTCACTGTCGCTATCAGAGTCG 2142839 20 100.0 76 NNNNNNNNNN ..............G..... ATCGGAATCAGAGTCGCTGTCTGAGTCTGAATCACTGTCGCTATCAGAATCAGAGTCACTGTCGCTATCAGAGTCG 2142935 20 100.0 58 NNNNNNNNNN ..............G..... ATCGGAATCAGAGTCGCTGTCTGAGTCTGAATCACTGTCGCTATCAGAATCTGAGTCG 2143013 20 100.0 88 NNNNNNNNNN .................... GTCGCTATCAGAATCTGAGTCACTGTCGCTATCAGAGTCTGAGTCTGAGTCTGAATCAGAGTCTGAGTCACTATCGGAATCAGAGTCG 2143121 20 100.0 82 NNNNNNNNNN .................... GTCGCTATCAGAATCAGAGTCACTGTCGCTGTCAGAGTCTGAGTCACTATCGGAATCAGAATCAGAATCAGAGTCACTGTCG 2143223 20 100.0 112 NNNNNNNNNN ..A..A.............. GTCGGAATCAGAGTCACTGTCGCTATCAGAGTCTGAATCACTGTCGCTATCAGAATCTGAATCGCTGTCAGAGTCTGAATCAGAGTCTGAGTCACTATCGGAATCAGAGTCG 2143355 20 100.0 100 NNNNNNNNNN .................... GTCGGAATCAGAGTCACTGTCGCTATCAGAGTCTGAATCACTGTCGCTATCAGAATCTGAATCGCTATCAGAGTCTGAGTCACTATCGGAATCAGAGTCG 2143475 20 100.0 76 NNNNNNNNNN .................... GTCGCTATCAGAATCAGAGTCACTGTCGCTGTCAGAGTCTGAGTCACTATCGGAATCAGAATCAGAGTCACTGTCG 2143571 20 100.0 88 NNNNNNNNNN ..A..A.............. GTCGGAATCAGAGTCACTGTCGCTATCAGAGTCTGAGTCACTGTCGCTATCAGAGTCTGAGTCACTGTCGCTATCAGAGTCGCTGTCT 2143679 20 100.0 64 NNNNNNNNNN GA............G..... ATCGGAATCAGAGTCGCTGTCTGAGTCTGAATCGCTGTCAGAATCAGAGTCACTGTCGCTATCA 2143763 20 100.0 70 NNNNNNNNNN GA.................. GTCGCTATCAGAGTCGCTGTCTGAGTCTGAATCACTGTCGGAATCTGAGTCGCTGTCGCTATCAGAGTCG 2143853 20 100.0 76 NNNNNNNNNN .................... GTCACTATCAGAGTCGCTGTCTGAGTCTGAGTCACTATCGGAATCAGAATCAGAGTCACTGTCGCTATCAGAGTCG 2143949 20 100.0 64 NNNNNNNNNN ..............G..... ATCGGAATCAGAGTCGCTGTCAGAATCAGAGTCACTGTCGCTATCAGAGTCTGAATCACTGTCA 2144033 20 100.0 70 NNNNNNNNNN ..A..A........G..... GTCGCTATCAGAGTCTGAGTCACTGTCGCTATCTGAGTCTGAGTCACTATCGGAATCAGAGTCGCTGTCG 2144123 20 100.0 94 NNNNNNNNNN .................... GTCGCTATCAGAATCTGAATCGCTATCAGAGTCTGAATCACTGTCACTATCAGAGTCTGAGTCACTATCGGAATCAGAGTCGGAATCACTGTCG 2144237 20 100.0 82 NNNNNNNNNN .....A.............. GTCGCTATCTGAGTCTGAATCACTGTCGCTATCAGAATCTGAATCGCTGTCAGAGTCTGAGTCACTATCGGAATCAGAGTCG 2144339 20 100.0 112 NNNNNNNNNN .................... GTCGCTATCAGAATCAGAGTCACTGTCGCTGTCAGAGTCTGAGTCACTATCGGAATCAGAATCAGAGTCACTGTCGCTATCAGAGTCTGAGTCACTATCGGAATCAGAGTCG 2144471 20 100.0 88 NNNNNNNNNN .................... GTCGCTATCAGAATCAGAGTCACTGTCGCTATCAGAGTCTGAGTCACTATCGGAATCAGAATCAGAGTCACTGTCGCTATCAGAGTCG 2144579 20 100.0 76 NNNNNNNNNN .....A........G..... ATCGGAATCAGAGTCGCTGTCAGAATCAGAGTCACTGTCGCTATCAGAGTCTGAATCACTGTCACTATCAGAGTCG 2144675 20 100.0 52 NNNNNNNNNN .....A........G..... ATCGGAATCACTGTCGGAATCACTGTCGCTGTCAGAGTCTGAATCACTGTCG 2144747 20 100.0 70 NNNNNNNNNN ..A................. GTCGCTATCTGAGTCTGAATCACTGTCGCTATCAGAATCTGAATCGCTGTCAGAATCAGAGTCACTGTCG 2144837 20 100.0 40 NNNNNNNNNN ..A..A.............. GTCACTATCAGAGTCTGAGTCACTATCGGAATCAGAGTCG 2144897 20 100.0 52 NNNNNNNNNN ..A..A.............. GTCACTATCAGAGTCGCTGTCAGAGTCTGAGTCACTATCGGAATCAGAGTCG 2144969 20 100.0 40 NNNNNNNNNN .....A.............. GTCGCTATCAGAATCAGAGTCACTGTCGCTATCAGAGTCG 2145029 20 100.0 28 NNNNNNNNNN .................... GTCGCTATCAGAATCAGAGTCACTGTCG 2145077 20 100.0 28 NNNNNNNNNN .....A........G..... ATCGGAATCAGAATCAGAGTCACTGTCG 2145125 20 100.0 22 NNNNNNNNNN ..A..A.............. GTCGGAATCAGAGTCACTGTCG 2145167 20 100.0 40 NNNNNNNNNN ..A..A..A.....G..... GTCGCTATCAGAGTCGCTGTCTGAGTCTGAATCACTGTCG 2145227 20 100.0 40 NNNNNNNNNN ..A..A..A.....G..... GTCGCTATCAGAGTCTGAGTCACTATCGCTATCAGAGTCG 2145287 20 100.0 1 NNNNNNNNNN .................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================== 55 20 57 CTGTCTGAGTCTGAATCACT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [43-13] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2670,828] Score: 0.18/0.18 # # Final direction: R [0.18,0.68 Confidence: MEDIUM] >NC_010400 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================== ====== 725979 21 100.0 63 NNNNNNNNNN .....C...........A... TCTGACAGCGACTCAGATTCTGATAGCGACAGCGATTCTGACTCTGACAGTGACTCAGACTCA 726063 21 100.0 39 NNNNNNNNNN ..................... TCAGACAGCGATTCGGATTCCGACAGTGACTCAGACTCA 726123 21 100.0 75 NNNNNNNNNN ..................... TCAGACAGTGATTCGGATTCTGACTCAGACAGTGATTCGGATTCTGACTCAGACAGCGATTCGGATTCTGACTCA 726219 21 100.0 63 NNNNNNNNNN .....C............... TCAGACAGCGATTCGGATTCCGACAGTGACTCAGACTCTGACAGCGATTCGGATTCAGACTCT 726303 21 100.0 63 NNNNNNNNNN .....C...........A... TCTGACAGCGACTCAGATTCTGATAGCGACAGCGATTCTGACTCTGACAGTGACTCAGACTCA 726387 21 100.0 39 NNNNNNNNNN ..................... TCAGACAGCGATTCGGATTCCGACAGTGACTCAGACTCA 726447 21 100.0 63 NNNNNNNNNN ..................... TCAGACAGCGACTCAGATTCTGATAGCGACAGCGATTCTGACTCTGACAGTGACTCAGACTCA 726531 21 100.0 75 NNNNNNNNNN ..................... TCAGACAGCGATTCGGATTCCGACAGTGACTCAGACTCAGACAGCGATTCGGATTCCGACAGTGACTCAGACTCA 726627 21 100.0 51 NNNNNNNNNN ..................... TCAGACAGTGATTCGGATTCTGACTCAGACAGTGATTCGGATTCTGACTCA 726699 21 100.0 87 NNNNNNNNNN ..................... TCAGACAGTGATTCGGATTCTGACTCAGACAGCGATTCGGATTCCGACAGTGACTCAGACTCTGACAGCGATTCGGATTCAGACTCT 726807 21 100.0 63 NNNNNNNNNN .................A... TCTGACAGCGACTCAGATTCTGATAGCGACAGCGATTCTGACTCTGACAGTGACTCAGACTCA 726891 21 100.0 57 NNNNNNNNNN ....................T AGCGACAGCGATTCTGACTCAGACAGCGATTCGGATTCCGACAGTGACTCAGACTCA 726969 21 100.0 75 NNNNNNNNNN ..................... TCAGACAGTGATTCGGATTCTGACTCAGACAGTGATTCGGATTCTGACTCAGACAGTGATTCGGATTCTGACTCA 727065 21 100.0 87 NNNNNNNNNN ..................... TCAGACAGTGATTCGGATTCTGATAGCGACAGCGATTCTGACTCAGACAGCGATTCGGATTCTGACTCAGACAGTGACTCAGACTCA 727173 21 100.0 69 NNNNNNNNNN ..................... TCAGACAGTGACTCAGACTCAGACAGTGATTCGGATTCCGACTCTGACAGTGACTCAGATTCTGACTCA 727263 21 100.0 63 NNNNNNNNNN ..................... TCAGACAGTGATTCGGATTCCGACAGTGACTCAGACTCAGACAGTGATTCGGATTCCGACTCT 727347 21 100.0 45 NNNNNNNNNN ........C..A........T AGCGACAGCGATTCTGACTCAGACAGTGATTCGGATTCAGACTCT 727413 21 100.0 21 NNNNNNNNNN ..................... TCTGACAGTGACTCAGACTCA 727455 21 100.0 21 NNNNNNNNNN ..................... TCAGACAGCGATTCGGATTCC 727497 21 100.0 21 NNNNNNNNNN ..................... AGCGATTCGGATTCAGACTCT 727539 21 100.0 21 NNNNNNNNNN ..................... TCTGACAGTGACTCAGACTCA 727581 21 100.0 39 NNNNNNNNNN ..................... TCTGACAGCGATTCGGATTCCGACAGTGACTCAGACTCT 727641 21 100.0 51 NNNNNNNNNN .................C... TCTGACAGTGACTCAGATTCTGACTCAGACAGCGATTCGGATTCTGACTCT 727713 21 100.0 27 NNNNNNNNNN .................A... TCTGACAGCGATTCGGATTCTGACGCA 727761 21 100.0 27 NNNNNNNNNN ..................... GCAGACAGTGATTCGGATTCTGACTCA 727809 21 100.0 33 NNNNNNNNNN .....C...........A... TCTGACAGCGATTCGGATTCCGACAGTGACTCT 727863 21 100.0 27 NNNNNNNNNN ..................... TCAGACAGTGATTCGGATTCTGACTCA 727911 21 100.0 39 NNNNNNNNNN .....C...........C... AGTGACTCAGACTCTGACAGCGATTCGGATTCAGACTCT 727971 21 100.0 39 NNNNNNNNNN .....C...........C... AGTGACTCAGATTCTGATAGCGACAGCGATTCTGACTCA 728031 21 100.0 27 NNNNNNNNNN ..................... TCAGACAGTGATTCGGATTCAGACTCT 728079 21 100.0 57 NNNNNNNNNN .....C...........C... AGTGACTCAGACTCTGACAGCGATTCGGATTCCGACAGTGACTCAGATTCTGATAGC 728157 21 100.0 45 NNNNNNNNNN .....C.....T..C..A... AGTGATTCGGATTCTGACTCAGACAGTGATTCGGATTCTGACTCA 728223 21 100.0 63 NNNNNNNNNN .....C...........C... AGTGACTCAGACTCTGACAGTGACTCAGATTCTGACTCAGACAGTGATTCGGATTCTGACTCA 728307 21 100.0 69 NNNNNNNNNN .....C...........C... AGTGACTCAGACTCTGACAGCGATTCGGATTCTGACAGCGACTCAGATTCTGATAGCGATTCTGACTCA 728397 21 100.0 87 NNNNNNNNNN .................A... TCTGACAGTGATTCGGATTCCGACTCTGACAGTGACTCAGATTCTGACTCAGACAGCGATTCTGACTCTGACAGTGACTCAGACTCT 728505 21 100.0 69 NNNNNNNNNN ..................... TCTGACAGTGACTCAGATTCTGATAGCGACAGCGATTCTGACTCAGACAGTGATTCGGATTCAGACTCT 728595 21 100.0 93 NNNNNNNNNN ..................... TCTGACAGCGATTCGGATTCCGACTCTGACAGTGATTCGGATTCTGACTCTGACAGTGACTCAGATTCTGATAGCGACAGCGATTCTGACTCA 728709 21 100.0 69 NNNNNNNNNN ..................... TCTGACAGCGATTCGGATTCCGACTCTGACAGTGACTCAGATTCTGATAGCGACAGCGATTCTGACTCA 728799 21 100.0 99 NNNNNNNNNN ..................... TCAGACAGCGATTCGGATTCTGACAGTGACTCAGACTCAGACAGTGATTCGGATTCAGACAGTGACTCAGATTCTGATAGCGACAGCGATTCTGACTCA 728919 21 100.0 1 NNNNNNNNNN .................A... NNNNNNNNNN ========== ====== ====== ====== ========== ===================== 40 21 54 GACAGTGATTCGGATTCTGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.38%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [7-10] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [844,4018] Score: 0.18/0.18 # # Final direction: F [0.68,0.18 Confidence: MEDIUM] >NC_010407 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1303030 29 100.0 31 NNNNNNNNNN ..C.AC....................... TGGCGGGGCCGGCCCGGCCCGTCCGGCGCGG 1303090 29 100.0 28 NNNNNNNNNN .....T.................CAAG.. CGGGGGCGGTGCTTCCCGGCCGCAGCGT 1303147 29 100.0 31 NNNNNNNNNN ............................. TGGTGGTGCCGGCCCGGCCCGTCCGGCGCGG 1303207 29 100.0 28 NNNNNNNNNN T....T.................CAAG.. CGGGGGCGGTGCCTCGCGGCCGCAGCGT 1303264 29 100.0 31 NNNNNNNNNN ............................. TGGCGGAGCCGGGTCGGCCCGGCCCGCGCGC 1303324 29 100.0 31 NNNNNNNNNN ............................. CGGCGGGGCCGGAGTGGCGCTGCCTGCGCGT 1303384 29 100.0 1 NNNNNNNNNN ...........G...........CAAG.. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 7 29 30 GATGGGGAGCGCAAGCCCTGGTCGCGCGA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.40,-4.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [8-11] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [20.0-20.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [6405,1243] Score: 0.18/0.18 # # Final direction: F [0.96,0.37 Confidence: MEDIUM] >NC_010465 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1821347 28 100.0 32 NNNNNNNNNN ............................ CTACTAACCCAGATTATTTAATGAATGACATA 1821407 28 100.0 32 NNNNNNNNNN ............................ AATTATTACTGTTGATAAACTTATCGATACTG 1821467 28 100.0 32 NNNNNNNNNN ............................ TACTCTGAAACTACGGAGTGCGATTATATTTC 1821527 28 100.0 32 NNNNNNNNNN ............................ CTACTAACCCAGATTATTTAATGAATGACATA 1821587 28 100.0 32 NNNNNNNNNN ............................ ACTTACATCAAAAACATTTCTAGATGCCCATG 1821647 28 100.0 33 NNNNNNNNNN ............................ CGGTTGGGCCATCTCGTGCACTGACCTGATAGC 1821708 28 100.0 32 NNNNNNNNNN ............................ TGCTGCAAACTTAGCTACTTCAGGCAAACATA 1821768 28 100.0 32 NNNNNNNNNN ............................ ATCCGCATGCATTCGTTGAAGCCACTCAATGC 1821828 28 100.0 32 NNNNNNNNNN ............................ AAGTAACGAATAGGCGCTATTCCAGCTCCCGC 1821888 28 100.0 32 NNNNNNNNNN ............................ TTGATATGGTCATGCGGGGTTATCACATTGGC 1821948 28 100.0 32 NNNNNNNNNN ............................ ATTACCGGCAGTCAATCTGCTGAGGAATAGTT 1822008 28 100.0 32 NNNNNNNNNN ............................ TAAAAATACTGTAGTAAACAATACTTTTAGTG 1822068 28 100.0 33 NNNNNNNNNN ............................ AAGTTAAACAGTATGTGGACGATGAAATAAGTA 1822129 28 100.0 32 NNNNNNNNNN ............................ GCCCCAAGTACCACCAATAGACTCCCAATACT 1822189 28 100.0 33 NNNNNNNNNN ............................ CAGTCTGGCGGCGCATTATCTGGTTTTATGTAT 1822250 28 100.0 32 NNNNNNNNNN ............................ CTATCAGCTTCGAATACAGAGCGCAGATAGAA 1822310 28 100.0 32 NNNNNNNNNN ............................ ACTCAGAAATATTTTTATTTGGCCCTATTTTT 1822370 28 100.0 32 NNNNNNNNNN ............................ AGAGAGTCCGCTACGGCTGGCAATGATTGTAT 1822430 28 100.0 32 NNNNNNNNNN ............................ TGATAATAAAACAGGTTTTTTGAGTCCATTTG 1822490 28 100.0 32 NNNNNNNNNN ............................ ACACGATTCAACTACAAAAATGACTCGTTTTA 1822550 28 100.0 32 NNNNNNNNNN ............................ GTGTAGACGCTTATGCTCAGGTTCTACTAATA 1822610 28 100.0 32 NNNNNNNNNN ............................ TATCTCGGCTGTGAAGAGGTCGAATACACCGA 1822670 28 100.0 32 NNNNNNNNNN ............................ GTTAGCGCCACCGGTCTTAATAACGCTACAAC 1822730 28 100.0 32 NNNNNNNNNN ............................ CCCTCTATGTTTGACTCACTACACTCTGAGGG 1822790 28 100.0 32 NNNNNNNNNN .C.......................... GTGCTAGCTAATCACGCTAGTAGTGTGCAAGG 1822850 28 100.0 33 NNNNNNNNNN ............................ TTCTCCGGCTCGGCGGCTAGCTGCCTGATTATT 1822911 28 100.0 32 NNNNNNNNNN ............................ ATGAAACATGCAATCAGCACGGCAATAGATTT 1822971 28 100.0 32 NNNNNNNNNN ............................ ACAGGAAAAAGATGAAACCGAGAGGCTTGAGG 1823031 28 100.0 32 NNNNNNNNNN ............................ TTCACACACTGCAAATGGACCTTATTTCTAAT 1823091 28 100.0 32 NNNNNNNNNN ............................ ACCGTGCAAGTCTGGCGGGTTGGTTTCGCCAC 1823151 28 100.0 32 NNNNNNNNNN ............................ GTTTTAATGTGAGAAATAGAGCGCATCCACGC 1823211 28 100.0 32 NNNNNNNNNN ............................ AATCTGGATAGCGCATATTTATCCTGTTTATT 1823271 28 100.0 32 NNNNNNNNNN ............................ ATGGTGTCATCATCAATAATAAAACCAAATGA 1823331 28 100.0 32 NNNNNNNNNN ............................ TTTATTAATTGAGTTTGCGCGTATACCCATTT 1823391 28 100.0 32 NNNNNNNNNN ............................ CATTAATAGAGGTATAAAAGGGATCATATTAT 1823451 28 100.0 32 NNNNNNNNNN ............................ ATAGACTCCCAATACTCACCCAACAATTTAAA 1823511 28 100.0 32 NNNNNNNNNN ............................ ATTATAATAATCGTGATTGTCTTTAAACGCTA 1823571 28 100.0 32 NNNNNNNNNN ............................ AGTGTTCTGTATTAATTTGCCTTCACATCTAA 1823631 28 100.0 32 NNNNNNNNNN ............................ AAGTTAAACAGTATGTGGACGATGAAATAAGT 1823691 28 100.0 32 NNNNNNNNNN ............................ AATTGAAATAATGGTTACTGGCAACGGGCAAG 1823751 28 100.0 32 NNNNNNNNNN ............................ ATTAAAGAATAAATTGTATTCTAAATAGTTGT 1823811 28 100.0 32 NNNNNNNNNN ............................ TACAGGAGGTGATCTAAATCTCAATCCGGTAG 1823871 28 100.0 32 NNNNNNNNNN ............................ ACGTAAACGAGAATATAGACACCTTCCTGATC 1823931 28 100.0 32 NNNNNNNNNN ............................ GCTAATCATGCTGCTAATGGTGCCGCGCGAGA 1823991 28 100.0 32 NNNNNNNNNN ............................ ACTAATAGTTGGCCCGCTGTAGGCTCGTCCGC 1824051 28 100.0 32 NNNNNNNNNN ............................ ATCCGGCAGCGCATCAAACTCAAGAACATCGC 1824111 28 100.0 1 NNNNNNNNNN ...................ATAATC... NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 47 28 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [339,361] Score: 0/0.18 # # Final direction: F [1.92,0 Confidence: HIGH] >NC_010410 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1066098 28 100.0 32 NNNNNNNNNN ............................ TGGTTGGGCATTAATCAGGTGGGTTTTTAATT 1066158 28 100.0 32 NNNNNNNNNN ............................ GATATAATCAACAAGGTTTTGCGCTTTAACGC 1066218 28 100.0 32 NNNNNNNNNN ............................ AGCTACTTTAAGTGCACTTAAAACATTTTTAG 1066278 28 100.0 32 NNNNNNNNNN ............................ AGACAAGGAATTGATCAGCAGCGCCTTGATAG 1066338 28 100.0 32 NNNNNNNNNN ............................ TGTTACAGATCGACCACCTACGGGCTTTTTGT 1066398 28 100.0 32 NNNNNNNNNN ............................ GTTGTAAGTGACAGTACCATCTAAATTAATCG 1066458 28 100.0 32 NNNNNNNNNN ............................ TCATCAAAGGCTTTGAGGGTAAGCGCCTTTGG 1066518 28 100.0 32 NNNNNNNNNN ............................ TGTTGCGCTGTTTTTGAACGTGTAATTGGATA 1066578 28 100.0 32 NNNNNNNNNN ............................ CCAAAGCGGTTAAGCCTCCAAGATTTGCATAC 1066638 28 100.0 32 NNNNNNNNNN ............................ ATGGTAATACAATTCAATCTCACTACAAGAAT 1066698 28 100.0 32 NNNNNNNNNN ............................ ATATATTTTACGTGTTGATTCAACTACGGGTG 1066758 28 100.0 32 NNNNNNNNNN ............................ TTTGGGGTAACTGGTGCCTTTAAGTTGTTTTG 1066818 28 100.0 32 NNNNNNNNNN ............................ TTCCAAAGTCTTGTTCAATATCTTGTTGTTGA 1066878 28 100.0 32 NNNNNNNNNN ............................ TTGCTCATCAATACAGCTACAAGAAAATTTGT 1066938 28 100.0 32 NNNNNNNNNN ............................ AGCATAAGCATAAAAATTATGTGTGAATATCA 1066998 28 100.0 32 NNNNNNNNNN ............................ AATATGCAACAATAGGAAATTGCTCAGCATCT 1067058 28 100.0 32 NNNNNNNNNN ............................ AGTTACATCATTGCTTTTAGTCTTTTCTATCT 1067118 28 100.0 32 NNNNNNNNNN ............................ ATGGGCCGCAACCATACGGTCTATGACTTCCA 1067178 28 100.0 32 NNNNNNNNNN ............................ TCATGATCATAGCCCTTATAGATATCGTATTT 1067238 28 100.0 32 NNNNNNNNNN ............................ CTGCGAAAGCGGGGTTTTTTATTGCCTGAAAT 1067298 28 100.0 32 NNNNNNNNNN ............................ GCATAGGCATTTACTCCCGCTGTGAGTGAAGG 1067358 28 100.0 32 NNNNNNNNNN ............................ ATCTGCAAGACCACTGATAGTTGTTGAGAATC 1067418 28 100.0 32 NNNNNNNNNN ............................ TGTGGCGTAGCGTTTCCAAAGTTGCCCATTGG 1067478 28 100.0 32 NNNNNNNNNN ............................ CCAAGCGTGACCAACTCACCAGTTGTCACAGG 1067538 28 100.0 32 NNNNNNNNNN ............................ TTTTGAAACTTATAGGCTTGGCTTGGGTTATC 1067598 28 100.0 32 NNNNNNNNNN ............................ TGAAAGGGATTTAAAAGCAGTTACATAAAATT 1067658 28 100.0 32 NNNNNNNNNN ............................ TGAATTGGATTTCGTAAATCATTGAGCAAGTT 1067718 28 100.0 32 NNNNNNNNNN ............................ AGCATCAAGTAGATCAGCAGTTACCTGTTCAG 1067778 28 100.0 32 NNNNNNNNNN ............................ TTCTGTATTAGTGGCCTTCATGTGCATTAAAA 1067838 28 100.0 32 NNNNNNNNNN ............................ ATACATGCCCACGTTGAAAATCGGGTACCAGT 1067898 28 100.0 32 NNNNNNNNNN ............................ GTATTAAAACTGCTTATAAACTTTCTTAAATC 1067958 28 100.0 32 NNNNNNNNNN ............................ TTGAAAAAAAGCATCATATTGTTCGGGGCAGG 1068018 28 100.0 32 NNNNNNNNNN ............................ ATTTTTTCTGTTAACTCTAAAATACCCTTCCG 1068078 28 100.0 32 NNNNNNNNNN ............................ TAAAAGTAGAGAGTGGCGGTGATTCACTAAGA 1068138 28 100.0 32 NNNNNNNNNN ............................ GTTGTCTGATCCGACAATTTGGCTGAGTACGT 1068198 28 100.0 32 NNNNNNNNNN ............................ TTGTACAACAATATGACCCGTATCGATGTAAC 1068258 28 100.0 32 NNNNNNNNNN ............................ AACAATTGCCTGAGTGGTATGAGCCACCAGTA 1068318 28 100.0 32 NNNNNNNNNN ............................ TTTGATAGCTAAAGTAGAAATCAAAGTCGCAA 1068378 28 100.0 32 NNNNNNNNNN ............................ TTTTATTGCTGGGAATGAAACATCAAAGCAAA 1068438 28 100.0 32 NNNNNNNNNN .................T.......... TTCTCATCGTGAAGGTTTTGCAAATATGCCTT 1068498 28 100.0 32 NNNNNNNNNN ............................ TGTCCGAAATTCAGATGGTGAAGTGACATATG 1068558 28 100.0 32 NNNNNNNNNN ............................ TTCAACCTACGCAAGTATTATGGGAACTATTT 1068618 28 100.0 33 NNNNNNNNNN ............................ GTCTTTATCAGTTACGATGGCATGAGTTTTTGT 1068679 28 100.0 32 NNNNNNNNNN ............................ ATAGCACGAGCAAGTTCTTGAGATGCCAAAAA 1068739 28 100.0 32 NNNNNNNNNN ............................ ATATCTCGCAGATTTGGACAAGGTCACGAATA 1068799 28 100.0 32 NNNNNNNNNN ............................ TTGGACAAAGATTATGACTGAGAAAGACGAGA 1068859 28 100.0 32 NNNNNNNNNN ............................ TTGGATGTGCAATTTGGTCAAGATGTGGGGAG 1068919 28 100.0 32 NNNNNNNNNN ............................ CGAACACGACTTGAACCAAAGTTAGAAAAATA 1068979 28 100.0 32 NNNNNNNNNN ............................ CAACTAAAAGCTATTTATGGGGGTAAAAATTT 1069039 28 100.0 32 NNNNNNNNNN ............................ TGTCATTGGCCGGCCATTCACAACCCCGATAA 1069099 28 100.0 33 NNNNNNNNNN ............................ CCAAAAAATGAGGAAATTGGACAATATCCAACA 1069160 28 100.0 32 NNNNNNNNNN ............................ TGTTGAACGAGTTATTCATAAGTGCCCGAAAT 1069220 28 100.0 32 NNNNNNNNNN ............................ AGCGGAAATCTTTTCAAGTGCGTAGGGGATAA 1069280 28 100.0 32 NNNNNNNNNN ............................ TTCTCCAAGTAAAGAATAAAACAATATACCGC 1069340 28 100.0 32 NNNNNNNNNN ............................ TCAAGGCGATCCACCTCCCGTCACAGTCATTT 1069400 28 100.0 32 NNNNNNNNNN ...........T.C.............. TTTGCTAAAAGGATTTATGCTTTAAAATACTT 1069460 28 100.0 32 NNNNNNNNNN .......A.....C...T.......... GTTGGCGTACGGATAACGGAAGAAAGCATAAG 1069520 28 100.0 32 NNNNNNNNNN .......A.........T.......... AAATAACCACGGTTGTGGTAAGTCACTTTTAC 1069580 28 100.0 1 NNNNNNNNNN .......A.A.....T.T.......... NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 59 28 32 GTTCATGGCGGCATACGCCATTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.00,-6.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [80.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [133,164] Score: 0/0.18 # # Final direction: F [1.05,0 Confidence: HIGH] >NC_010468 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1016299 29 100.0 32 TATGTTTAGA ............................. TTCCGCGACCCGGCGATAAGGGAAGATGGGTG 1016360 29 100.0 32 AAGATGGGTG ............................. TAACGACAGAGGGATTCGGCAGCGAAGAGGAT 1016421 29 100.0 32 CGAAGAGGAT ............................. CGTAGTTTCGGCAGTCCAGTGCCTCGTTACGT 1016482 29 100.0 32 CTCGTTACGT ............................. ATAGAACGGGACGAGATTTTTAAACAATGGCT 1016543 29 100.0 32 AACAATGGCT ............................. CAATCTGAGCCAGACGCGACGAATAAAAGCAT 1016604 29 100.0 33 ATAAAAGCAT ............................. TTGACGTTGATTTTGTTCGTTATGTTGCCAGCC 1016666 29 100.0 32 GTTGCCAGCC ............................. CTCTGATTCATCGGCGGCGATACTGTCATCAC 1016727 29 100.0 32 CTGTCATCAC ............................. GAAAAACAAATAGATGGATAGCTCGATATCAT 1016788 29 100.0 32 TCGATATCAT ............................. TACATGTTGATGACGTTTGCCAAATGCCATGG 1016849 29 100.0 32 AATGCCATGG ............................. ATTATTAATTCTGGTGGCGCTGGTCGCCCTGG 1016910 29 100.0 32 GTCGCCCTGG ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 1016971 29 100.0 32 CGGTGATAAC ............................. CCGAGCATTATATCCTGTGCGTCGTTCATTTA 1017032 29 100.0 CGTTCATTTA ............................. CCAGAAAACA ========== ====== ====== ====== ========== ============================= 13 29 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,3] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-13.40,-12.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [340,212] Score: 0/0.18 # # Final direction: F [1.51,0 Confidence: HIGH] >NC_010468 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =========================== ====== 1018445 27 100.0 34 TATGGGATGA ........................... CTCTTCAGCAATGAAATCGTCAAACGAGATTAGA 1018506 27 100.0 34 CGAGATTAGA ........................... ATTACGCCGCCTCGCGTTTTTAGTCATTTCTAGA 1018567 27 100.0 34 CATTTCTAGA ........................... AGGAGTTTAATTTCCAGATTGAGCGCTGGATAGA 1018628 27 100.0 34 GCTGGATAGA ........................... CGTGGTCGGGATTGTTGCGCCAGTCTCCGGGGGA 1018689 27 100.0 34 CTCCGGGGGA ........................... CACGGCTGGCCATTTGAAATACCTGTTGCTCTGT 1018750 27 100.0 34 GTTGCTCTGT ........................... GTGAGTCCGTCAGCGGTGCGCCGCTGCAACACGA 1018811 27 100.0 34 TGCAACACGA ........................... CTCGATCAGGAAAATGAATTCCTGGAAAAAAAGA 1018872 27 100.0 34 GAAAAAAAGA ........................... CGTGGTCGGGATTGTTGCGCCAGTCTCCGGGGGA 1018933 27 100.0 34 CTCCGGGGGA ........................... CACGGCTGGCCATTTGAAATACCTGTTGCTCTGT 1018994 27 100.0 34 GTTGCTCTGT ........................... AACAGCGAGCCAACTGGTTTCAGATTGCTGAAGT 1019055 27 100.0 34 TTGCTGAAGT ........................... GCGATCTCGCGGAATACACCGACGAGGCGGGCGT 1019116 27 100.0 34 AGGCGGGCGT ........................... TAAGGCCGTCGCCGGATCAGCCTGGCTATGCCGA 1019177 27 96.3 34 GCTATGCCGA .C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTAGA 1019238 27 96.3 34 TTCACGTAGA .C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTCGA 1019299 27 100.0 34 GTTCTGTCGA ........................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTTGA 1019360 27 96.3 CCGATGTTGA ..........................A CCATATAAC ========== ====== ====== ====== ========== =========================== 16 27 34 GTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,3] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-6.80,-5.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [63,640] Score: 0.18/0.18 # # Final direction: F [1.65,0.45 Confidence: MEDIUM] >NC_010468 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1044936 29 100.0 32 NNNNNNNNNN ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 1044997 29 100.0 32 NNNNNNNNNN ............................. CGGTGGCAGTGATGAGGCGTTCCCAATTAATG 1045058 29 100.0 32 NNNNNNNNNN ............................. CGCACTCAAAATAGTAAATTAATTTATGAATT 1045119 29 100.0 32 NNNNNNNNNN ............................. CATCCGGCGCTGAACATCGCCACCTGCCTAAC 1045180 29 100.0 32 NNNNNNNNNN ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 1045241 29 100.0 32 NNNNNNNNNN ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 1045302 29 100.0 32 NNNNNNNNNN ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 1045363 29 100.0 32 NNNNNNNNNN ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 1045424 29 100.0 32 NNNNNNNNNN ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 1045485 29 100.0 32 NNNNNNNNNN ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 1045546 29 100.0 32 NNNNNNNNNN ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 1045607 29 100.0 32 NNNNNNNNNN ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 1045668 29 100.0 32 NNNNNNNNNN ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 1045729 29 100.0 32 NNNNNNNNNN ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 1045790 29 100.0 32 NNNNNNNNNN ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 1045851 29 100.0 32 NNNNNNNNNN ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 1045912 29 100.0 32 NNNNNNNNNN ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 1045973 29 100.0 32 NNNNNNNNNN ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 1046034 29 100.0 32 NNNNNNNNNN ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 1046095 29 100.0 32 NNNNNNNNNN ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 1046156 29 100.0 32 NNNNNNNNNN ............T.....A.......... GACGCACTGGATGCGATGATGGATATCACTTG 1046217 29 100.0 1 NNNNNNNNNN ...........C..T....TAGA.CT..C NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 22 29 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,3] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-13.40,-12.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [107,22] Score: 0.18/0.18 # # Final direction: F [2.1,0 Confidence: HIGH] >NC_010468 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2984569 29 100.0 31 TACCTGTGAA ............................. CCAACTTTCACAGCCTTTGCAAGATTGTTCC 2984629 29 100.0 32 AGATTGTTCC ............................. TTCGCTGCAACCGCTAGCCAAGACGGTAGGTT 2984690 29 96.6 ACGGTAGGTT ............................T CAAATACTAC ========== ====== ====== ====== ========== ============================= 3 29 31 TTTCTAAGCTGCCTGTACGGCAGTGAACG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,8] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-8.90,-9.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [441,2114] Score: 0.18/0.18 # # Final direction: R [0.41,1.05 Confidence: MEDIUM] >NC_010418 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 131045 29 100.0 37 NNNNNNNNNN A........T................... CAACACATATTTGGAATATCGCTAATGGAATAAGGTG 131111 29 100.0 22 NNNNNNNNNN .........G.......T........... ATAATTTATTATTACCTTTTTA 131162 29 100.0 34 NNNNNNNNNN ................G...........T GACCTATTTTATTTAATTAATGAAAGGGAAAATA 131225 29 100.0 38 NNNNNNNNNN .C.......A..T....T........... CTAAACTCCGCAAACGTTTATTGTCCTAATTTTTATTA 131292 29 100.0 37 NNNNNNNNNN ............T.......A......T. CTAGCAAGGAACCTCCTAATTTCTTATTGTTAATAAG 131358 29 100.0 31 NNNNNNNNNN .C.......T.......A........... TAGCGTGTGTAAAAAACAAAAAGAATAACTA 131418 29 100.0 37 NNNNNNNNNN .......C........G............ CTATTTTATTGATTATTATTGCTTCTTAAAAAAATAG 131484 29 100.0 36 NNNNNNNNNN .................A........... CATACTTAGGAATATTAAAAATCTTTCAGTTTTTAT 131549 29 100.0 30 NNNNNNNNNN ...C.....T........G.......... CGGAGGTTTTTTAACAATATTTTTCTCCTT 131608 29 100.0 36 NNNNNNNNNN A..........G................. CAAAAAATAGGGATTTTGTAAGCATTAATTTTTTAT 131673 29 100.0 22 NNNNNNNNNN .........T................... GTACAACTATGTACTATTATTT 131724 29 100.0 32 NNNNNNNNNN ............................. CGAAAATTAAATTTATAATCTGAAAAGGGGAA 131785 29 100.0 29 NNNNNNNNNN .........T.......AT.T.TGCAGT. GAAATAGTAGATTTATAAAAAAAGAATGC 131843 29 100.0 34 NNNNNNNNNN A........T......GA........... GGGACAGAGAGATATATAAAATTTAGTTATATAA 131906 29 100.0 36 NNNNNNNNNN ............T................ CGGAATAATAATAAAAAAGAAAAAAATATTAAATCA 131971 29 100.0 35 NNNNNNNNNN ............................. CTACTATTTTCCTCCATGTTTTTTAATTTTTCTAA 132035 29 100.0 31 NNNNNNNNNN .......C.T.......A........... TAGTGTGTGTAAAAAACAGAAAAAATAACTA 132095 29 100.0 33 NNNNNNNNNN ...........G....G............ AACTTTCAGAAGGCATATTTTCTTAAATATTTG 132157 29 100.0 1 NNNNNNNNNN .................T........... NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 19 29 32 GTTTAACTTCTACATTAGATGTATTTAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-1.40,-1.40] Score: 0/0.37 # Array degeneracy analysis suggestion: F [16-21] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [76.7-80.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [13,909] Score: 0.18/0.18 # # Final direction: F [0.41,0.18 Confidence: MEDIUM] >NC_010424 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1898301 30 100.0 36 CGGCGCACTC .............................. CGGCCAGCGCCGCGGGCCAGAACCACTTCTGTTTCG 1898367 30 100.0 36 TTCTGTTTCG .............................. GGTTTATGCCAGCCGCCAGCGTGTTTGCTTTCATAG 1898433 30 100.0 36 GCTTTCATAG .............................. TTCTTAAACCGCTCTGCATCGCTGTTACCGTCGCTC 1898499 30 100.0 36 ACCGTCGCTC .............................. TGAGCCGCCGCACCGGGCAGGAGTTCCCCAAAGCCA 1898565 30 100.0 37 CCCAAAGCCA .............................. TTCACTGTTGTCATTCGTGAAATCCTTGGAGTTCCGC 1898632 30 100.0 38 GGAGTTCCGC .............................. TCCCTTGGCACCGATGGGCGGGCTAACCGGGTGGCCAC 1898700 30 100.0 36 GGGTGGCCAC .............................. CTTCGCAAAGTCAAAGAGCCAGCTCCTCCCGTACTG 1898766 30 100.0 36 TCCCGTACTG .............................. CAGGTGGATACGTTCAGGGCCAGGCTGGAATTTGTC 1898832 30 100.0 37 GGAATTTGTC .............................. CGGGTAGCCGGTCAACGTACTTGAACTTGAAGGCTCG 1898899 30 100.0 37 TGAAGGCTCG .............................. CTAAAGAACCTCAACGGGCAGATCATCTGCAAGAGCC 1898966 30 100.0 36 TGCAAGAGCC .............................. CCCTGCGGCAGAGCTAACCGCTCTGCCCAAAGTCCA 1899032 30 100.0 37 CCAAAGTCCA .............................. GACAGGAGAATTCAACAAACTAAGATTCGCCGAAATT 1899099 30 100.0 38 CGCCGAAATT .............................. CCGGAGGGGCTTTTCCTTTTGTGGCCAGCCCCTCACCC 1899167 30 100.0 37 CCCCTCACCC .............................. AAGTCCACAGTGGGTTTGGCTATGGACTTTGGGCAGG 1899234 30 100.0 38 TTTGGGCAGG .............................. CTGAACCTAGCCTCGAATTTAGGCGCCCGCTGGTTCCA 1899302 30 100.0 38 GCTGGTTCCA .............................. GTTTAAATTACGGTAATCATCGTAAACCTGCAATAGAA 1899370 30 100.0 37 TGCAATAGAA .............................. CAGGGCCAGGTTGGAATTTGTCCGGCACGCCGTAATC 1899437 30 100.0 37 CGCCGTAATC .............................. ACCACGTCCTCGGCGCAGGTGGCGGTGGAAGCGGCCC 1899504 30 100.0 36 GAAGCGGCCC .............................. TGCGTGATCCTGCTACGCTTGACCTCCTCTTCCCGG 1899570 30 100.0 40 CTCTTCCCGG .............................. GGTCGCGCAGCCGGGCCGATCAGAAACCGGCGGATGTTAG 1899640 30 100.0 36 CGGATGTTAG .............................. CGGTGTTTCCGGCTGGCAAAGGAGGAGCGCGGGACC 1899706 30 100.0 38 GCGCGGGACC .............................. CCTCCAGTGTCCAGCCATCGTTTAGATACTGCGACACT 1899774 30 100.0 36 CTGCGACACT .............................. TGCTCAACCGCTTCTTCAAGAACGACAAAAGCAATT 1899840 30 100.0 37 AAAAGCAATT .............................. GTGACAGTGGATATCGTGACTACTGAGGGTGAAAGCA 1899907 30 100.0 35 GGTGAAAGCA .............................. GGAGGGCATCACGAATAGGATTCAAACCCTCCGGG 1899972 30 100.0 36 ACCCTCCGGG .............................. TCCAGCTGGCTCAAGGATTGCCGGCATCGGTGTTTC 1900038 30 100.0 37 TCGGTGTTTC .............................. CTATGCCTCCGGAGTACATCCCTTCACCGTCAGAAAG 1900105 30 100.0 37 CGTCAGAAAG .............................. CGTGGGCTTATATGTGCCCAGCGCACTTTAAGACCCA 1900172 30 100.0 36 TTAAGACCCA .............................. TTTGTGGCCAGCCCCTCATCCTGGCCACAAAAGGAA 1900238 30 100.0 36 ACAAAAGGAA .............................. TAGCATTATCAGTATCAGTACCCGCGAGTGTGACTG 1900304 30 100.0 36 AGTGTGACTG .............................. TAACATGTTAATCCTCCCTCTTAATCGTCAGTTTTA 1900370 30 100.0 38 GTCAGTTTTA .............................. TCAATTTGAGAATATCTATACTACAGGGCCTGAATTAA 1900438 30 100.0 37 CCTGAATTAA .............................. CCCATTAGCAAGATAACGTTCGGGATTACTCAACAAG 1900505 30 100.0 36 ACTCAACAAG .............................. TTGGCCAATATGGATAAAGCCGGGTTAGGCACTTGC 1900571 30 100.0 35 AGGCACTTGC .............................. TCGCGTGCGTCACGCGCACGGTGCCTTCCACCAAA 1900636 30 100.0 37 TTCCACCAAA .............................. TGTTCCGGGACGCGGAGCATTTCATTTTCACCATCAC 1900703 30 100.0 TCACCATCAC .............................. CTCGTAGCAA ========== ====== ====== ====== ========== ============================== 37 30 36 GTTTCAATCCCTCGTAGGTAGGCTGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [7,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.50,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [41.7-45.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [294,238] Score: 0/0.18 # # Final direction: R [0,5.24 Confidence: HIGH] >NC_010424 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1355523 37 100.0 39 AAAACGATCA ..................................... GCAGGTGGGCCGGTGGGCCAGACAAGGAGAACATTGATT 1355599 37 100.0 36 AACATTGATT ..................................... TACATATCAGGCAACGGCGTTCGGGGGAAGCTTCGC 1355672 37 100.0 35 GAAGCTTCGC ..................................... GGTGCCGTGACTTTTTAGAAGCCCCGGAAAAACCG 1355744 37 100.0 39 GGAAAAACCG ..................................... CTACTCACCGACCCCTACCATTTCAACCGCAACCTGTCG 1355820 37 100.0 35 CAACCTGTCG ..................................... AGAGCGTTTGCGCTGCCTGCCATAACAGGAAGCAC 1355892 37 100.0 40 CAGGAAGCAC ..................................... AGGCGGTACGTCCTGCAGGAATGGCGGTGCGTCAGGGAAA 1355969 37 100.0 38 GTCAGGGAAA ..................................... TGTTGCATGAAATGCAACACACTACCTTGGGGTGGTAG 1356044 37 97.3 36 GGGGTGGTAG ...................T................. TGCTGGTGCCGCATCCCGGATCGGGGATGCTTGGAT 1356117 37 100.0 39 ATGCTTGGAT ..................................... CGGGGCCTACCGCTATATCAACGCCGATGTGGTATACGA 1356193 37 100.0 36 TGGTATACGA ..................................... ACAGAGCAGACTACACCATTTCCGGTAACAACATCC 1356266 37 100.0 36 AACAACATCC ..................................... GGTGCCGGGGCAGGTGTCGGCGTTCGTGTCAGTACC 1356339 37 100.0 36 TGTCAGTACC ..................................... TCCACTGCAACCGATGGTTCGACAATCCGTGTTACG 1356412 37 100.0 37 CCGTGTTACG ..................................... TGGGAATCGGCCTAAACACGCTGTCGGACAAAATAAA 1356486 37 100.0 37 ACAAAATAAA ..................................... TCGGCAACGCCGTAGTTCCTCAAGTCGCCGAGGTAAT 1356560 37 100.0 34 CCGAGGTAAT ..................................... TGCGATGAATCCTCAATCCTGAAAGCGTTTGACG 1356631 37 100.0 38 GCGTTTGACG ..................................... ACAACGCGCAACGGATCGCCGTAACCGGTACGGTCAAC 1356706 37 100.0 35 TACGGTCAAC ..................................... AGTTGCTGAATTAAAATTTGAGTGCCGACTGGGAA 1356778 37 100.0 37 CGACTGGGAA ..................................... AGCACGCACTTCTTCGTGTTCGACCTGAACCTACCCC 1356852 37 100.0 38 AACCTACCCC ..................................... GGATACAACCCACAACTTCGCTCAATCTCAAAAATAAA 1356927 37 100.0 36 CAAAAATAAA ..................................... AGGTGATAGCTTATGCAGCGCAAGAAGCACGGGGCG 1357000 37 100.0 37 GCACGGGGCG ..................................... GAACGCATATTGTAGTCGCAAATGTTACGAACTAAAT 1357074 37 100.0 38 CGAACTAAAT ..................................... CCGTTCAGCCGCAAGCACCTTCTGGCCCGGCGTGTTCG 1357149 37 100.0 37 GGCGTGTTCG ..................................... TCGGCGGCGCAATGGAAGTGCAGAGCAGAACAATGAT 1357223 37 100.0 35 GAACAATGAT ..................................... AGTAACTCCATACGGTCCGGATCGATCTGACCAGT 1357295 37 100.0 37 TCTGACCAGT ..................................... AGCCTGGTGGATGCGCCAGCGGGCGCGACGATAATGG 1357369 37 100.0 37 ACGATAATGG ..................................... ACTTTAGGAGACCAAGCTACTTATGCCTTCCTATGGC 1357443 37 100.0 40 TTCCTATGGC ..................................... AGGGGCTGCGCGTCGAGATCGATCCGCCGAATACTACGGC 1357520 37 100.0 34 ATACTACGGC ..................................... ATGTCGGCGCTGCGGAGTTGTGACATCGTGGTGC 1357591 37 100.0 37 ATCGTGGTGC ..................................... CGGCCCAGGCATACACACAGCACTGGGAAGGTGGCAT 1357665 37 100.0 37 AAGGTGGCAT ..................................... TTCCTCCCGCCTTTCGCGGGCTGCCAGATTCCGGCTC 1357739 37 100.0 37 ATTCCGGCTC ..................................... CGCGGACGATCTTCTCTTGCCAGGGTAGTAATTCAAA 1357813 37 100.0 37 GTAATTCAAA ..................................... GCTTGACTGAAACCAGTTACAAGTACGCCGCTTTGGA 1357887 37 100.0 36 CCGCTTTGGA ..................................... GCGCACGAAGTTGCCGGCCCAGGTGTGTCTGCTCAG 1357960 37 100.0 38 GTCTGCTCAG ..................................... CATAATCGCAGGATGCCGGGGCCGGAGCAAAGCCGTCC 1358035 37 100.0 37 AAAGCCGTCC ..................................... AACCGAGACAAGGACATTGACGGTTCGGCTGCTGGCG 1358109 37 100.0 36 GCTGCTGGCG ..................................... TGTTACAAATCCCAGCGGCAGTGCGTTTCGTTTCGG 1358182 37 100.0 39 TTCGTTTCGG ..................................... TTAATTGGTTTTATCTGTCAAATTTGTGGTTGTACGGAA 1358258 37 100.0 35 TTGTACGGAA ..................................... ACCAGTCCCATGCGACATACTCCGCAAGTTCTTTA 1358330 37 100.0 37 AAGTTCTTTA ..................................... CGCTTCTGGACACCTACCAGCCAACCCCTCGTAGAAC 1358404 37 100.0 37 CTCGTAGAAC ..................................... TACGAGGAGCGCCTTCGTGCGAAGGCGGAAGGCAACA 1358478 37 100.0 35 GAAGGCAACA ..................................... CTTCGATCTTCGGCCAGCCGACCACGACCATGCTG 1358550 37 100.0 36 GACCATGCTG ..................................... GGACCCGGCATGCAACAACTCGTCCGCCGTCTTAAC 1358623 37 100.0 39 CCGTCTTAAC ..................................... CGATTCTAGAGCCGGCGGTACGGGCGTTGCCCAATTACC 1358699 37 100.0 34 CCCAATTACC ..................................... CGCACCGCCTTGTCCCCGACGACGTAATCCTTGG 1358770 37 100.0 39 TAATCCTTGG ..................................... GCATACCGGACTACTACAAGGCAATTTTAACCCGCGGCC 1358846 37 100.0 37 ACCCGCGGCC ..................................... GCGCCGGCAATCGCCGGCCTTACTTGCAGGTGCTGGC 1358920 37 100.0 35 AGGTGCTGGC ..................................... TCACCTGGTTTGCAACGCTCGCCGCGATACACAAG 1358992 37 100.0 39 GATACACAAG ..................................... CGTCCAGGGCGGCCTCGAAAACCTGGCCGCCCTTCTCAT 1359068 37 100.0 35 CCCTTCTCAT ..................................... CAAGCTGCTCTGCGGGGATGGGTTGACCACACGTC 1359140 37 100.0 37 ACCACACGTC ..................................... AGCCGGGGATTGCGGGGAGGGTAAGAAAGGGGGAGAA 1359214 37 100.0 37 AGGGGGAGAA ..................................... TTCGACGCTGGCCGGCTGGTCGCGGACGCCGAAGAAA 1359288 37 100.0 GCCGAAGAAA ..................................... AGACCCTGGC ========== ====== ====== ====== ========== ===================================== 52 37 36 CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.30,-4.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [50.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [141,236] Score: 0/0.18 # # Final direction: R [0.27,1.15 Confidence: MEDIUM] >NC_010473 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2994578 28 96.4 33 GTTATATGGT ..........................T. GACAGAACGGCCTCAGTAGTCTCGTCAGGCTCC 2994639 28 100.0 33 GTCAGGCTCC ............................ CTGTTTTCGCAAATCTATGGACTATTGCTATTC 2994700 28 100.0 33 ATTGCTATTC ............................ GGGCGCACGGAATACAAAGCCGTGTATCTGCTC 2994761 28 100.0 33 GTATCTGCTC ............................ TGGCTCTGCAACAGCAGCACCCATGACCACGTC 2994822 28 100.0 33 TGACCACGTC ............................ GAAATGCTGGTGAGCGTTAATGCCGCAAACACA 2994883 28 100.0 33 CGCAAACACA ............................ ATTACGCCTTTTTGCGATTGCCCGGTTTTTGCC 2994944 28 100.0 GGTTTTTGCC ............................ TCTAAACATA ========== ====== ====== ====== ========== ============================ 7 28 33 GGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [641,341] Score: 0/0.18 # # Final direction: R [0,1.65 Confidence: HIGH] >NC_010473 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2968265 29 100.0 32 NNNNNNNNNN ................AT.........A. CAGCGTCAGGCGTGAAATCTCACCGTCGTTGC 2968326 29 100.0 32 NNNNNNNNNN ...........T................. TCGGTTCAGGCGTTGCAAACCTGGCTACCGGG 2968387 29 100.0 32 NNNNNNNNNN ...............AA............ GTAGTCCATCATTCCACCTATGTCTGAACTCC 2968448 29 100.0 32 NNNNNNNNNN ............................. CCGGGGGATAATGTTTACGGTCATGCGCCCCC 2968509 29 100.0 32 NNNNNNNNNN ............................. TGGGCGGCTTGCCTTGCAGCCAGCTCCAGCAG 2968570 29 100.0 32 NNNNNNNNNN ............................. AAGCTGGCTGGCAATCTCTTTCGGGGTGAGTC 2968631 29 100.0 32 NNNNNNNNNN ..........T.................. TAGTTTCCGTATCTCCGGATTTATAAAGCTGA 2968692 29 100.0 33 NNNNNNNNNN ............................. GCAGGCGGCGACGCGCAGGGTATGCGCGATTCG 2968754 29 100.0 33 NNNNNNNNNN ............................. GCGACCGCTCAGAAATTCCAGACCCGATCCAAA 2968816 29 100.0 32 NNNNNNNNNN ............................. TCAACATTATCAATTACAACCGACAGGGAGCC 2968877 29 100.0 32 NNNNNNNNNN ............................. AGCGTGTTCGGCATCACCTTTGGCTTCGGCTG 2968938 29 100.0 32 NNNNNNNNNN ............................. TGCGTGAGCGTATCGCCGCGCGTCTGCGAAAG 2968999 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 13 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,6] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [41.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [84,107] Score: 0/0.18 # # Final direction: R [0,1.92 Confidence: HIGH] >NC_010424 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1906103 30 53.3 35 CAGCAGAATC --------------................ TCAAGAGCTGTTCCGCCAGCGGCTTATCGAATTGA 1906168 30 100.0 36 ATCGAATTGA .............................. GGTTGTCTCCAGCGGCATTATGGCATTTAGTGGATC 1906234 30 100.0 35 TTAGTGGATC .............................. CTAGCTTGGCTGCTCGCTGGCAGCAGTCTGGGCAC 1906299 30 100.0 37 GTCTGGGCAC .............................. GACCGAATATCCGCCGGTAGTCGTATCCCATTGCAAA 1906366 30 100.0 35 CCATTGCAAA .............................. CGGCTATGCGGCCAACCGCACGGCGGCGGTATTTA 1906431 30 100.0 35 GCGGTATTTA .............................. ACGATAGGCAGGGTTTTAGGCGCAGGCATTAGCAT 1906496 30 100.0 37 GCATTAGCAT .............................. GAATTCGTTTTCAGGATATTCAGCGGGGTCTAAGATT 1906563 30 100.0 36 GTCTAAGATT .............................. ATTACTTATCGTGGGAAATCTAAAAGCATAGCACAA 1906629 30 100.0 36 CATAGCACAA .............................. AAGCTAAAGTCCCAGCAACGCTCCAAAAGTGGGCAC 1906695 30 100.0 36 AAGTGGGCAC .............................. CAAAAACCAGCGAAACCGGCAAAAACTCTGTCGAAC 1906761 30 100.0 35 TCTGTCGAAC .............................. TTGGTTCCTTGTTCTTTGAAAACATTAATTTGAGG 1906826 30 100.0 36 TAATTTGAGG .............................. GGCGGAAGAAGGCCCAGTACATCCAGGGTAGAGTGT 1906892 30 100.0 36 GGTAGAGTGT .............................. ATTATCAACATCGAGGTAATCGATCATGCTTAGATG 1906958 30 100.0 36 TGCTTAGATG .............................. AGACACCCACGCACCACTTCCATCAGATCGTGCTAG 1907024 30 100.0 36 ATCGTGCTAG .............................. ACCGCCATAGCCCGTGATCTGCACCCGACCCTACGT 1907090 30 100.0 36 GACCCTACGT .............................. GTTGGCGGGTAAGGAGTGAGAGAGTGAACCGACCTG 1907156 30 100.0 38 AACCGACCTG .............................. AGGAGGTGGAAGAATGGGTTACGTAGGCTGCCCAGCAA 1907224 30 100.0 37 TGCCCAGCAA .............................. GATCGTTGGGGTAAGAGAGACCAAGTGGCGGTCAAGG 1907291 30 100.0 35 GCGGTCAAGG .............................. AAACACCAGGGCGCGAAACACAAGCACATACCAAG 1907356 30 100.0 35 ACATACCAAG .............................. TTTTGTGGGGTTATCCACAGAGATGTGCTTGTTGT 1907421 30 100.0 38 TGCTTGTTGT .............................. GACAGCGGGGGGTGGTACGTGCTAGGCTTAGAATCAAG 1907489 30 100.0 36 TAGAATCAAG .............................. TTTTCGGTTTCTGTTTCTGGTTTCGGTTTCTGTTTC 1907555 30 100.0 36 TTTCTGTTTC .............................. TGCGCCGCAAAGCAGCCAGAACGAAGGTGCGCCTAC 1907621 30 100.0 36 GTGCGCCTAC .............................. TGTTCTATTGTACTGAACGCGGGCGGCATCCTATCC 1907687 30 100.0 37 CATCCTATCC .............................. AGTTCTGCAATTTGTGCGTCAAGCTCAAGATACCGCT 1907754 30 100.0 36 AGATACCGCT .............................. CCTTATACCGAGAGTTGTCTATCTAGCCGGGGGAAT 1907820 30 100.0 38 CCGGGGGAAT .............................. ACCCCGAAAGTCGGCGTAGCTTCCTCCCAGAAGCCGCA 1907888 30 100.0 38 AGAAGCCGCA .............................. ACGAGCAGGGATGGCTTGTGAGAAGGTGGAGCAAATGC 1907956 30 100.0 37 GAGCAAATGC .............................. GAAATTATAAGTCTGGAAACCTTTTCTAGTTTGTACC 1908023 30 100.0 36 AGTTTGTACC .............................. TGGAAAGGAGGGTGAAGAAATGCCGAGGATTTGGGC 1908089 30 100.0 36 GGATTTGGGC .............................. CCGGACGGGCGCTGAACGTGGACCCGTCGTTCGTGT 1908155 30 100.0 37 TCGTTCGTGT .............................. CCGGTTCCGGCTCCGACGCCTCTGGACGACCTGTTTG 1908222 30 100.0 36 GACCTGTTTG .............................. ACGGCACGGCTTCGGCGGCCGACATTCTGACCGATT 1908288 30 100.0 36 CTGACCGATT .............................. TGCAAGTGCTGGCAGTAATGGTGGTGCTGGAGCTAC 1908354 30 100.0 36 CTGGAGCTAC .............................. GGTCCCCGTGATCCCGGGCCACGATGGTCGCTGGCC 1908420 30 100.0 36 GTCGCTGGCC .............................. ACAACCAGCAGACTGCACGTGTAATTCAGCAGGCGC 1908486 30 100.0 36 CAGCAGGCGC .............................. GTGCCGTTCAGTCTATCACGTCCTGCACCGCACCCA 1908552 30 100.0 37 ACCGCACCCA .............................. GATAAAAAATGTTAAAAGATCGCTGGGGAAGTATCAA 1908619 30 100.0 37 GAAGTATCAA .............................. GATTTGGGCAACGATGACCTTCATCCCCCTTGGCGGC 1908686 30 100.0 36 CCTTGGCGGC .............................. AGTGATCGAGCAGGTTCGGGCGCATGCACGAATTGC 1908752 30 100.0 36 CACGAATTGC .............................. GGAGAAGTGGCCGTAAGGTCAGCGAGACCGATTGAC 1908818 30 100.0 37 ACCGATTGAC .............................. GATGGCGGGGCAACTGGGCCCACAACCTGGCCGGGAT 1908885 30 100.0 35 TGGCCGGGAT .............................. CGCACGGGGCAGACAACCCTTGGCAAAACAAAAAC 1908950 30 100.0 37 AAACAAAAAC .............................. TGAAAGGGGATTCAATGATCGGTGCCCGGATTCTTGA 1909017 30 100.0 36 GGATTCTTGA .............................. GCTAGCCCTGCTTCAGTGCCACTTTTGCCGCCTCTT 1909083 30 100.0 36 GCCGCCTCTT .............................. CCTCCTTCACCTCTCGGCCGCCTGCGGCAGATCAGG 1909149 30 100.0 36 GCAGATCAGG .............................. GGCCTGGCCCTTCAGCCAGACCTTGATCCAGATGTT 1909215 30 100.0 36 TCCAGATGTT .............................. CCGGAAATCCTCTGCAAATAACTCCTCCTTGCAAAC 1909281 30 100.0 35 CCTTGCAAAC .............................. TGCAATGCTGCATTTTTGCGGGTGGAAGTGCTTGA 1909346 30 100.0 35 AAGTGCTTGA .............................. TTCCCACGGGATCGTCGGCCGGTTCTACGAGCAGT 1909411 30 100.0 40 TACGAGCAGT .............................. CCTCTTTCCTTCTTTCTTTACTTCTTCCTGCCGGGATTTA 1909481 30 100.0 37 CCGGGATTTA .............................. CAATGAGCATGTTTTCCTAGCCGGACGCACCGGGTCC 1909548 30 100.0 36 CACCGGGTCC .............................. CTGCGCTTCCCCAGCAGTACCCCCGCTTGTCTCCAG 1909614 30 100.0 37 TTGTCTCCAG .............................. TATCCGGGATGCTGATCCTGTTCGGCGCGTTTATTCT 1909681 30 100.0 36 CGTTTATTCT .............................. GGTGCTCGCGCGCGGCGGCGTGAAGGACCGAGATTA 1909747 30 100.0 35 ACCGAGATTA .............................. ACAGGTGGCAGTGATGAGCAAATTGCTTAAAAAGG 1909812 30 100.0 36 CTTAAAAAGG .............................. GTATTTTCGTGTGACTGGAGCTCTTATGTTACTATG 1909878 30 100.0 36 TGTTACTATG .............................. CCTCTTTCCTTCTTTACTTCTTCCTGCCGGGATTTA 1909944 30 100.0 36 CCGGGATTTA .............................. CTGCGCTTCCCCAGCAGTACCCCCGCTTGTCTCCAG 1910010 30 100.0 36 TTGTCTCCAG .............................. TTTTGCAAAGTGAGTTGAGCAACTTAATGTCCCGAA 1910076 30 100.0 36 ATGTCCCGAA .............................. CTGCGCTTCCCCAGCAGTACCCCCGCTTGTCTCCAG 1910142 30 100.0 36 TTGTCTCCAG .............................. TTTTGCAAAGTGAGTTGAGCAACTTAATGTCCCGAA 1910208 30 100.0 36 ATGTCCCGAA .............................. CGTAGCGCCGCGCAGGTGGCTTCTAACTCAGCAACG 1910274 30 100.0 37 CTCAGCAACG .............................. GAGGCCATCATGAATGGCTTGAAGCGGGCCAAGACCT 1910341 30 100.0 35 GCCAAGACCT .............................. GCTCCGCGAGGACCTGGAGTGCTGCCGCCGGCTGC 1910406 30 100.0 35 CGCCGGCTGC .............................. GAAGGTGCAGGAGAGTATTTCGGCCGGAATAATTC 1910471 30 100.0 35 GGAATAATTC .............................. CCGGGTGATCCCGTTGGGTACAGAGCTGTACGTTG 1910536 30 100.0 37 CTGTACGTTG .............................. AGCTGCCCGATGATGAGTTGTACCGGCTGATTGCCCT 1910603 30 100.0 35 TGATTGCCCT .............................. GTGATAGGCCATATTTCATAGCAGCCTTTAGCTCT 1910668 30 100.0 36 CTTTAGCTCT .............................. GGTGAAAGGAGCGACAAGCAAGCAGGCAGACAGAAG 1910734 30 100.0 37 CAGACAGAAG .............................. ACGGTTAGGGGAACGGTTAGGGGAACGGTTTGCCTAA 1910801 30 100.0 36 GTTTGCCTAA .............................. CACCCCAACCCCTCCGGGAGTAAAACCTACGGAGGG 1910867 30 100.0 37 CTACGGAGGG .............................. GTCAATACAACAGAATAAAATTCGCCGAGATTCGGCA 1910934 30 100.0 40 AGATTCGGCA .............................. TTTTCGGGCAGAGTTAACCACTCTGCCCAAAGCCCCGGAT 1911004 30 100.0 36 AGCCCCGGAT .............................. CACCCCAACCCCTCCGGGAGTAAAACCTACGGAGGG 1911070 30 100.0 37 CTACGGAGGG .............................. GTCAATACAACAGAATAAAATTCGCCGAGATTCGGCA 1911137 30 100.0 36 AGATTCGGCA .............................. GACTATCCTATCCCGAAGAATGGAAATACAAAGAAT 1911203 30 100.0 35 TACAAAGAAT .............................. GAGATCGCTGGGGCAGCATTAGAGGTGTGAAGACT 1911268 30 100.0 38 TGTGAAGACT .............................. TTTTTGTATCCACTTGTGATCCTAGTTCGTGTAGAGCC 1911336 30 100.0 35 GTGTAGAGCC .............................. TCTTGTCACCCCCTTGCTTTTAGTGCTGGTTTAGT 1911401 30 100.0 35 CTGGTTTAGT .............................. GGCTAAAGAAAGCCTTAGCGCTGCTGATCTTTTTC 1911466 30 100.0 36 GATCTTTTTC .............................. CGACAAGAAAAACACTGTCGAGCTAGTCCTCCCCGA 1911532 30 100.0 36 TCCTCCCCGA .............................. CCAACGAACCAACGAACATGAACTAGAGTGTTAGTT 1911598 30 100.0 36 AGTGTTAGTT .............................. ACGCTTGTAATATCCTTGTATCAAGCCGAAAAAAAT 1911664 30 100.0 36 CGAAAAAAAT .............................. CGCTGTAGTTTCTACATGTAGAAACTCACCCGCGCC 1911730 30 100.0 35 CACCCGCGCC .............................. TCCACTCGTCACCCAGAGCGGCATCCAGAATCGGC 1911795 30 100.0 36 CAGAATCGGC .............................. TAATGATCCGCTGGACGGTGAAGTTTTGATTGCGGG 1911861 30 100.0 36 TGATTGCGGG .............................. CTCACTAAACGACAAGTGTAGTATAATCAAAGTAGC 1911927 30 100.0 35 TCAAAGTAGC .............................. TACTATGGACCGTGCGAAGCATGCGGCGAGGAAGC 1911992 30 100.0 35 GCGAGGAAGC .............................. CATGCCGACCCGGATCAGGACCTGGCCGGTTAAGA 1912057 30 100.0 CCGGTTAAGA .............................. CCATTTTGAC ========== ====== ====== ====== ========== ============================== 91 30 36 GTTTCAATCCCTCGTAGGTAGGCTGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [7,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.50,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [136,201] Score: 0/0.18 # # Final direction: R [0,5.65 Confidence: HIGH] >NC_010424 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1902591 30 100.0 36 CGGTAAGGGA .............................. GCCTTTGAACTCCTAGCCGCCCGGCTCGGATCCCAC 1902657 30 100.0 36 CGGATCCCAC .............................. TTTCCTAACCCCCAACTTCCCCTCCGGTCTAAAAAC 1902723 30 100.0 38 GTCTAAAAAC .............................. CTCAACAGATCGTGAGCAACACGCTCTACAAAGTCACT 1902791 30 100.0 36 CAAAGTCACT .............................. ATCGGTGCTTGATGTTACCAAAGATATATGCCTCCT 1902857 30 100.0 36 TATGCCTCCT .............................. TGTTACATCAGTATCCACTGCAATGCGCACACGAAT 1902923 30 100.0 36 GCACACGAAT .............................. GCTTTTACAGTCCGATGGAGATGTCCGCAATCTCCC 1902989 30 100.0 36 GCAATCTCCC .............................. AATTTCGGCACTCCGGGCCAGTGCTTGTCTAGCACT 1903055 30 100.0 37 GTCTAGCACT .............................. TAACTCCTTCGGCGGTCGCCGGGGGACACCACCAATG 1903122 30 100.0 38 ACCACCAATG .............................. CCTGACTGTGAATATAGAGAGCGGCAACCTATGTGGGA 1903190 30 100.0 36 CTATGTGGGA .............................. CAAACCTTGGGCATATCGGGGCCTCCTTTCATTCGC 1903256 30 100.0 36 TTTCATTCGC .............................. GAGGGCAAACCATGTCATCACTTAGCTACAAAGAAT 1903322 30 100.0 36 TACAAAGAAT .............................. ACACTCTACCCTGGATGTACTGGGCCTTCTTCCGCC 1903388 30 100.0 36 TTCTTCCGCC .............................. GCAGCACCCAAAAGGGCAAAGGGGCAAAAGGTGAAC 1903454 30 100.0 36 AAAGGTGAAC .............................. TCAGAGCCATCGCTTCGCGCGAAGGCCTCTGCAAAA 1903520 30 100.0 37 CTCTGCAAAA .............................. CCACATACTAAAGGTGGTTGTCAAGTGTACTACTACT 1903587 30 100.0 36 TACTACTACT .............................. TGCTTTGTCACAGCGGTTGGAAGCGATTCCGGGGAA 1903653 30 100.0 36 TTCCGGGGAA .............................. ACAATTGTGCTAAATAAACGGCGTGGTACGCCTGTG 1903719 30 100.0 37 TACGCCTGTG .............................. CTCAACAATGCACTTATCCGTGCCTGCAACCTAGACC 1903786 30 100.0 36 AACCTAGACC .............................. TTGCGTCTTCCGGCCCTCGATAATCGCTCTCACCAT 1903852 30 100.0 36 CTCTCACCAT .............................. TATCTACTCCATTTACCTCACCCCTTCCGCCGCTCC 1903918 30 100.0 36 CCGCCGCTCC .............................. CACATTCGCGCCGTGTTTCAACCACGTCCTCGCTGG 1903984 30 100.0 36 TCCTCGCTGG .............................. CCACCTGGACTCTCGGCGGCACCACCCGCTCCCGTC 1904050 30 100.0 36 CGCTCCCGTC .............................. TAAATCTCCCGATCTGTACCCTTCCCCTGTAAACTC 1904116 30 100.0 35 CTGTAAACTC .............................. TTGCCGAAACCGTGGGTCTAAGGCTCGCAAACACC 1904181 30 100.0 36 CGCAAACACC .............................. CTGCATTCGCTGCAAGCAAGCGGTGTACTATACCTA 1904247 30 100.0 36 ACTATACCTA .............................. ACAGCCGAGGTTGGAGCTTATTACTGTAGTAACACC 1904313 30 100.0 TAGTAACACC .............................. CTTCTTATTCGTCGGTAATAGGTCGTTTTAGGAACG ========== ====== ====== ====== ========== ============================== 27 30 36 GTTTCAATCCCTCGTAGGTAGGCTGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [7,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.50,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [41.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [229,233] Score: 0/0.18 # # Final direction: R [0,5.51 Confidence: HIGH] >NC_010465 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2756336 28 92.9 32 CAGCGTGTAA ..........G................T ATCCAGTGTCACTGCTGGGAAGGTTTCAAGTT 2756396 28 96.4 32 GTTTCAAGTT ..........G................. GTTTTTAATTTTCCGTCAGTCTCACCTTTAAT 2756456 28 96.4 32 CACCTTTAAT ..........G................. ATTCAATTCGATTAGTGTTAAGGAACTTGCAG 2756516 28 96.4 32 GAACTTGCAG ..........G................. GTTATCTGTGATTGATTTATATGATGTTAAAT 2756576 28 92.9 32 GATGTTAAAT ..........G................T ATGGTTTCACCTGTATCTGGTAATAATCCCTT 2756636 28 96.4 32 ATAATCCCTT ..........G................. ACCCTCTCCCTTGATTCGAATACCGGCAGTGC 2756696 28 96.4 32 CCGGCAGTGC ..........G................. TTGGAGTTAATAAGTTTGATATGTATACGATT 2756756 28 96.4 32 GTATACGATT ..........G................. GTTGTTTTTCCATTAATATCGACAACTTTTTT 2756816 28 96.4 32 CAACTTTTTT ..........G................. CCATCTATTTGATAAATTCCAGATTCATTTCT 2756876 28 96.4 32 ATTCATTTCT ..........G................. AAACATCAGCGGTCCCGCTGGATGAATATGGT 2756936 28 96.4 32 TGAATATGGT ..........G................. ATTAAGTAAGCGTGATGTGTACGGCGGATTCT 2756996 28 96.4 32 GGCGGATTCT ..........G................. TGTCATGGACGCAGCGAAGGCGGAGCAAGCAT 2757056 28 96.4 32 GAGCAAGCAT ..........G................. CCGTTACGCCGACTACTGGAACTGTTGCAGAA 2757116 28 96.4 32 TGTTGCAGAA ..........G................. ACTGGTTTGGTTCTTGCTCGGTCGGCTGAATT 2757176 28 96.4 32 CGGCTGAATT ..........G................. GATATTTCATTTGGTTGTTTATCTAGCTTGTC 2757236 28 100.0 32 CTAGCTTGTC ............................ GATTCATATTTCCGACACTCATTAAATAATCT 2757296 28 100.0 32 TAAATAATCT ............................ TCTTCATGATCGGCAGAGCTGGTTTGTTCGAT 2757356 28 100.0 31 TTTGTTCGAT ............................ TCAATATACATACAGAAATAGTCCTCGTAAA 2757415 28 100.0 32 TCCTCGTAAA ............................ GAAAACGTTCTACAGTTTATTGAGTCTGTTAA 2757475 28 100.0 33 AGTCTGTTAA ............................ GGGTTAGATTATATAATCAGACATTGGGTTTAG 2757536 28 100.0 32 TTGGGTTTAG ............................ ATTTACGCTGAGATTCTGCGGCGGCGCGGTAA 2757596 28 100.0 32 GGCGCGGTAA ............................ GTGCTGTTTGTTGATGTCCTGCTCGACGAGGC 2757656 28 100.0 33 TCGACGAGGC ............................ AATGCGTTGATGTAAGCCTCTTTCACCGTGGCG 2757717 28 100.0 32 CACCGTGGCG ............................ TTTTAGGGTCGTGTCTATCAGCCCCTTGATAC 2757777 28 100.0 32 CCCTTGATAC ............................ ACCTTATTTAATTGGAATGGGTGGGGCTTCAT 2757837 28 100.0 32 GGGGCTTCAT ............................ TTTGACCTTGATAGCTCGATAGGCAATCAAGA 2757897 28 100.0 32 GCAATCAAGA ............................ GAGCAATTTACATTAGAGCTAAAAGATATTGC 2757957 28 100.0 32 AAGATATTGC ............................ CCTTGCACACTACTAGCGTGATTAGCTAGCAC 2758017 28 100.0 32 TAGCTAGCAC ............................ ATCGGAACCCCTCGATGTTACTATCCGACATA 2758077 28 100.0 ATCCGACATA ............................ AGTAAGATAA ========== ====== ====== ====== ========== ============================ 30 28 32 TTTCTAAGCTACCTGTGCGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.60,-6.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [40.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [96,496] Score: 0.18/0.18 # # Final direction: R [0,1.6 Confidence: HIGH] >NC_010480 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 54533 31 100.0 49 NNNNNNNNNN ............................... AAGCAGAGACAGGGATTGAGAGAACACCAGCAAACTCCTTATTGGTTTC 54613 31 100.0 42 NNNNNNNNNN ............................... TTAGAGGGCTTCTCTTGAGCTTTGTTGGCGAGTAACAGTTTC 54686 31 100.0 43 NNNNNNNNNN ............................... ATAAGGATCTATTAAAAGCAAATCAACATCTATTTTAAGTTTC 54760 31 100.0 40 NNNNNNNNNN ............................... TGGTTTACTGCTGAGTTCTTGGTGACTTACACCAAGTTTC 54831 31 100.0 48 NNNNNNNNNN ............................... ATGAGTGCTATGGGTTATCGATCCTATGATCAGCTATTGAACCGTTTC 54910 31 100.0 40 NNNNNNNNNN ............................... TTTATTGTTAAAGCGTTGAGCTTCCTCAACAAGTTGTTTC 54981 31 100.0 42 NNNNNNNNNN ............................... GGTGAAGGAGAAAAACTTCCCTGAGTTTAGTAAGGAGGTTTC 55054 31 100.0 46 NNNNNNNNNN ............................... TACTGCAGAAGTCCGCTTTGGACCCGATGACTATCAAAAGAGTTTC 55131 31 100.0 43 NNNNNNNNNN ............................... CAGAGATTGTAGATCATATAGACTTTCTATGGAACTATGTTTC 55205 31 100.0 47 NNNNNNNNNN ............................... ACAAGAAATGGCTGAATATCTTGATGAATTACTTTCTGTTAAGTTTC 55283 31 100.0 45 NNNNNNNNNN ............................... TTGTAAAGATGACCCTACGGTTAAAGAATTTTCTAGAATCGTTTC 55359 31 100.0 47 NNNNNNNNNN ............................... TTTTTTCAGTCACAATCAGAAAAATTCTATAAAGAATTGAGTGTTTC 55437 31 100.0 45 NNNNNNNNNN ............................... TGAGAGAAGAGAAAAAGTATGTTCACGCCTTTGTACAAGGGTTTC 55513 31 100.0 45 NNNNNNNNNN ............................... GAAACAATATCAGAGTCAACTCCAATAGGACCACCAAAGAGTTTC 55589 31 100.0 44 NNNNNNNNNN ............................... TTACGGGCACGCCTGTGGCAATTCACCTTTGACGAAGTGGTTTC 55664 31 100.0 41 NNNNNNNNNN ............................... AGATTAGCTAGAACCTCACGCAAGGGACTAAAGTGGGTTTC 55736 31 100.0 51 NNNNNNNNNN ............................... CACAGTTGCGTAAGCTCTTGGTGAGACAACTAAAGGCCCATGCCAAGTTTC 55818 31 100.0 45 NNNNNNNNNN ............................... TTTGTTCACCATTGACGCAGTATTGCGTCTGGTAAACTTAGTTTC 55894 31 100.0 40 NNNNNNNNNN ............................... TGGAATTGTTGGAGTCCCCCCCACTTATTAGCGGCGTTTC 55965 31 100.0 44 NNNNNNNNNN ............................... ATCGTGTTAGTCAAGTATTTATATATGATTACAGCTACTGTTTC 56040 31 100.0 45 NNNNNNNNNN ............................... AATAGCTAATGATAGGCAGGGTTGCGTCTGCCTTACCAACGTTTC 56116 31 100.0 44 NNNNNNNNNN ............................... TTCCACCCTGGTTGTTAAGGTAGGGAATCTTGTTTGGAGGTTTC 56191 31 100.0 44 NNNNNNNNNN ............................... TTCCACCCTGGTTGTTAAGGTAGGGAATCTTGTTTGGAGGTTTC 56266 31 100.0 43 NNNNNNNNNN ............................... GTCGCTGAACGGGAACCCGAACCAGAACTAGAGGAGTTGTTTC 56340 31 100.0 43 NNNNNNNNNN ............................... GTCGCTGAACGGGAACCCGAACCAGAACTAGAGGAGTTGTTTC 56414 31 100.0 42 NNNNNNNNNN ............................... ATTGGTCTCAATATGAGCTAACTGCCGATCAGTTAGAGTTTC 56487 31 100.0 50 NNNNNNNNNN ............................... CGCATTAGCATTCTTACGGGCAATGAATAGTTTTTCCTCAGGGAGGTTTC 56568 31 100.0 45 NNNNNNNNNN ............................... AATGACCTGTCTCTTCAGTACGGGTAGGTCAATTCCCGTAGTTTC 56644 31 100.0 47 NNNNNNNNNN ............................... CGGGTAAAGGATTGGTTCGATACGACTATACAGCTCAAAAGGGTTTC 56722 31 100.0 53 NNNNNNNNNN ............................... TTGATTACAGCGCAATGACAGTGCGTGAATTGCGTGCGCTGTGCTCTTGTTTC 56806 31 100.0 45 NNNNNNNNNN ............................... TTCAAGTGAAACGCCGTAACAAGTCCGTATTGGCCAACCTGTTTC 56882 31 100.0 41 NNNNNNNNNN ............................... TTATGTTCGGTTTTATCTCTAATTTATTCACTTCTAGTTTC 56954 31 100.0 45 NNNNNNNNNN ............................... CGGTTGATTCTTTGGTACAGTTTGACCAAGTAACTACTGCGTTTC 57030 31 100.0 48 NNNNNNNNNN ............................... GTACATTTATGTAAATAGCAATTACCTAAATGCTGAGCTGCGTGTTTC 57109 31 100.0 44 NNNNNNNNNN ............................... AGGTTCAGCCAAATCAATGGGCTGGAGGAAGAATACGTTGTTTC 57184 31 100.0 72 NNNNNNNNNN ............................... CGAGCACGCGCTGGCGCTCGACGCGGCGCCGTCGATCTCGCTGTTCTGGCTCGCCACGCGCCCCGACGGCCA 57287 31 100.0 47 NNNNNNNNNN GTT..C.A.CTA..TG.TTC.C.G.T...GA GAAACAATTAATGGTTTAGTTGATGTAACTCTTCGTCTTAAGGCTGA 57365 31 100.0 46 NNNNNNNNNN GTT..C.A.CTA..TG.TTC.C.G.T...GA GAAACCTACCTCAACTTTTGTAGACGGCGACGGAAAACGACCTGTT 57442 31 100.0 40 NNNNNNNNNN GTT..C.A.CTA..TG.TTC.C.G.T...GA GAAACGATTTTTAATCCTGTAATGTGTCGAGGGTGCTGCC 57513 31 100.0 43 NNNNNNNNNN GTT..C.A.CTA..TG.TTC.C.G.T...GA GAAACTTGATGTGTAATTGGGAAGACGTCGCGGCTATTGAGGC 57587 31 100.0 44 NNNNNNNNNN GTT..C.A.CTA..TG.TTC.C.G.T...GA GAAACTCTACTATGAATTAAGTCATCTAATGACATGTGATGACT 57662 31 100.0 48 NNNNNNNNNN GTT..C.A.CTA..TG.TTC.C.G.T...GA GAAACGTACATTTATGTAAATAGCAATTACCTAAATGCTGAGCTGCGT 57741 31 100.0 44 NNNNNNNNNN GTT..C.A.CTA..TG.TTC.C.G.T...GA GAAACAGGTTCAGCCAAATCAATGGGCTGGAGGAAGAATACGTT 57816 31 100.0 1 NNNNNNNNNN GTT..C.A.CTA..TG.TTC.C.G.T...GA NNNNNNNNNN ========== ====== ====== ====== ========== =============================== 44 31 45 CAATCTATTTGCTTCTCAGGTGAAGAGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.29%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.50,-2.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [61.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [80,3911] Score: 0.18/0.18 # # Final direction: F [0.64,0.18 Confidence: MEDIUM] >NC_010475 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1864678 36 97.2 37 GGACGCGCTA -................................... AGACGAACTCTCCGTTCCCATCGCTGATTTGCAGGTT 1864751 36 100.0 35 TTTGCAGGTT .................................... ACGTAATCAACCTGGGGCGAATAATCTTTCATAGG 1864822 36 100.0 37 CTTTCATAGG .................................... TGAGGCGTTGAATGTTGTTGTTGTTCTTTGATTAAAT 1864895 36 100.0 36 TTGATTAAAT .................................... GGAGAATGGAGAAAGAGAACCACGCTTCACAGTTGA 1864967 36 100.0 35 TCACAGTTGA .................................... TAATGGGCAAGCTCGTGGGTTTCTTCTTGCCAGGA 1865038 36 100.0 38 CTTGCCAGGA .................................... ATGGGGAGCTGCGGGGTATTTTTCACCCATTCCCAGAA 1865112 36 100.0 35 ATTCCCAGAA .................................... CAGAGGAACTTCCGGTGGATGTCCTTGCGGAGTAC 1865183 36 100.0 36 TGCGGAGTAC .................................... GGCGGCACTTGGAGCAGCTGTGGCAGTGACGGCAAA 1865255 36 100.0 36 TGACGGCAAA .................................... AGTAAATCCTCGAACATTGGCTTAGTATTTGAGTGT 1865327 36 100.0 38 ATTTGAGTGT .................................... GCGACCAGGGTGCTGTAATCCGTTTCGTTTTTTAAGGT 1865401 36 100.0 36 TTTTTAAGGT .................................... ACTTTCGAGAGGGCGTTAGCAATACAGGTTCTTCAG 1865473 36 100.0 37 GGTTCTTCAG .................................... GACGATTGAGAGATAAATGGCTACGGAATTATGCCCA 1865546 36 100.0 36 ATTATGCCCA .................................... GGCGGCTGTGTTGGCGTAGATCCAGAAAAACTTAAT 1865618 36 94.4 AAAACTTAAT .......G............A............... TTTAGGGCGT ========== ====== ====== ====== ========== ==================================== 14 36 36 GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [9,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.60,-3.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [55.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [258,359] Score: 0/0.18 # # Final direction: F [1.15,0.27 Confidence: MEDIUM] >NC_010480 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 54528 36 100.0 44 NNNNNNNNNN T................................... AAGCAGAGACAGGGATTGAGAGAACACCAGCAAACTCCTTATTG 54608 36 100.0 37 NNNNNNNNNN .................................... TTAGAGGGCTTCTCTTGAGCTTTGTTGGCGAGTAACA 54681 36 100.0 38 NNNNNNNNNN .................................... ATAAGGATCTATTAAAAGCAAATCAACATCTATTTTAA 54755 36 100.0 35 NNNNNNNNNN .................................... TGGTTTACTGCTGAGTTCTTGGTGACTTACACCAA 54826 36 100.0 43 NNNNNNNNNN .................................... ATGAGTGCTATGGGTTATCGATCCTATGATCAGCTATTGAACC 54905 36 100.0 35 NNNNNNNNNN .................................... TTTATTGTTAAAGCGTTGAGCTTCCTCAACAAGTT 54976 36 100.0 37 NNNNNNNNNN .................................... GGTGAAGGAGAAAAACTTCCCTGAGTTTAGTAAGGAG 55049 36 100.0 41 NNNNNNNNNN .................................... TACTGCAGAAGTCCGCTTTGGACCCGATGACTATCAAAAGA 55126 36 100.0 38 NNNNNNNNNN .................................... CAGAGATTGTAGATCATATAGACTTTCTATGGAACTAT 55200 36 100.0 42 NNNNNNNNNN .................................... ACAAGAAATGGCTGAATATCTTGATGAATTACTTTCTGTTAA 55278 36 100.0 40 NNNNNNNNNN .................................... TTGTAAAGATGACCCTACGGTTAAAGAATTTTCTAGAATC 55354 36 100.0 42 NNNNNNNNNN .................................... TTTTTTCAGTCACAATCAGAAAAATTCTATAAAGAATTGAGT 55432 36 100.0 40 NNNNNNNNNN .................................... TGAGAGAAGAGAAAAAGTATGTTCACGCCTTTGTACAAGG 55508 36 100.0 40 NNNNNNNNNN .................................... GAAACAATATCAGAGTCAACTCCAATAGGACCACCAAAGA 55584 36 100.0 39 NNNNNNNNNN .................................... TTACGGGCACGCCTGTGGCAATTCACCTTTGACGAAGTG 55659 36 100.0 36 NNNNNNNNNN .................................... AGATTAGCTAGAACCTCACGCAAGGGACTAAAGTGG 55731 36 100.0 46 NNNNNNNNNN .................................... CACAGTTGCGTAAGCTCTTGGTGAGACAACTAAAGGCCCATGCCAA 55813 36 100.0 40 NNNNNNNNNN .................................... TTTGTTCACCATTGACGCAGTATTGCGTCTGGTAAACTTA 55889 36 100.0 35 NNNNNNNNNN .................................... TGGAATTGTTGGAGTCCCCCCCACTTATTAGCGGC 55960 36 100.0 39 NNNNNNNNNN .................................... ATCGTGTTAGTCAAGTATTTATATATGATTACAGCTACT 56035 36 100.0 40 NNNNNNNNNN .................................... AATAGCTAATGATAGGCAGGGTTGCGTCTGCCTTACCAAC 56111 36 100.0 39 NNNNNNNNNN .................................... TTCCACCCTGGTTGTTAAGGTAGGGAATCTTGTTTGGAG 56186 36 100.0 39 NNNNNNNNNN .................................... TTCCACCCTGGTTGTTAAGGTAGGGAATCTTGTTTGGAG 56261 36 100.0 38 NNNNNNNNNN .................................... GTCGCTGAACGGGAACCCGAACCAGAACTAGAGGAGTT 56335 36 100.0 38 NNNNNNNNNN .................................... GTCGCTGAACGGGAACCCGAACCAGAACTAGAGGAGTT 56409 36 100.0 37 NNNNNNNNNN .................................... ATTGGTCTCAATATGAGCTAACTGCCGATCAGTTAGA 56482 36 100.0 45 NNNNNNNNNN .................................... CGCATTAGCATTCTTACGGGCAATGAATAGTTTTTCCTCAGGGAG 56563 36 100.0 40 NNNNNNNNNN .................................... AATGACCTGTCTCTTCAGTACGGGTAGGTCAATTCCCGTA 56639 36 100.0 42 NNNNNNNNNN .................................... CGGGTAAAGGATTGGTTCGATACGACTATACAGCTCAAAAGG 56717 36 100.0 48 NNNNNNNNNN .................................... TTGATTACAGCGCAATGACAGTGCGTGAATTGCGTGCGCTGTGCTCTT 56801 36 100.0 40 NNNNNNNNNN .................................... TTCAAGTGAAACGCCGTAACAAGTCCGTATTGGCCAACCT 56877 36 100.0 36 NNNNNNNNNN .................................... TTATGTTCGGTTTTATCTCTAATTTATTCACTTCTA 56949 36 100.0 40 NNNNNNNNNN .................................... CGGTTGATTCTTTGGTACAGTTTGACCAAGTAACTACTGC 57025 36 100.0 43 NNNNNNNNNN .................................... GTACATTTATGTAAATAGCAATTACCTAAATGCTGAGCTGCGT 57104 36 100.0 39 NNNNNNNNNN .................................... AGGTTCAGCCAAATCAATGGGCTGGAGGAAGAATACGTT 57179 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 36 36 39 GTTTCCAATCTATTTGCTTCTCAGGTGAAGAGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.50,-2.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [58.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [75,4543] Score: 0.18/0.18 # # Final direction: F [0.64,0.59 Confidence: LOW] >NC_010480 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 57292 36 100.0 42 NNNNNNNNNN CAA..T.T.TGC..CT.AGG.G.A.A...ACA.TTA ATGGTTTAGTTGATGTAACTCTTCGTCTTAAGGCTGAGTTTC 57370 36 100.0 41 NNNNNNNNNN CAA..T.T.TGC..CT.AGG.G.A.A...ACCT.C. TCAACTTTTGTAGACGGCGACGGAAAACGACCTGTTGTTTC 57447 36 100.0 35 NNNNNNNNNN CAA..T.T.TGC..CT.AGG.G.A.A...AC..TTT TTAATCCTGTAATGTGTCGAGGGTGCTGCCGTTTC 57518 36 100.0 38 NNNNNNNNNN CAA..T.T.TGC..CT.AGG.G.A.A...ACTTG.T GTGTAATTGGGAAGACGTCGCGGCTATTGAGGCGTTTC 57592 36 100.0 39 NNNNNNNNNN CAA..T.T.TGC..CT.AGG.G.A.A...ACTCT.. TATGAATTAAGTCATCTAATGACATGTGATGACTGTTTC 57667 36 100.0 43 NNNNNNNNNN CAA..T.T.TGC..CT.AGG.G.A.A...AC.T.CA TTTATGTAAATAGCAATTACCTAAATGCTGAGCTGCGTGTTTC 57746 36 100.0 39 NNNNNNNNNN CAA..T.T.TGC..CT.AGG.G.A.A...ACAGGTT CAGCCAAATCAATGGGCTGGAGGAAGAATACGTTGTTTC 57821 36 100.0 67 NNNNNNNNNN CAA..T.T.TGC..CT.AGG.G.A.A...ACCG.G. ACGCGCTGGCGCTCGACGCGGCGCCGTCGATCTCGCTGTTCTGGCTCGCCACGCGCCCCGACGGCCA 57924 36 100.0 42 NNNNNNNNNN .................................... AATTAATGGTTTAGTTGATGTAACTCTTCGTCTTAAGGCTGA 58002 36 100.0 40 NNNNNNNNNN .................................... CTACCTCAACTTTGTAGACGGCGACGGAAAACGACCTGTT 58078 36 100.0 35 NNNNNNNNNN .................................... GATTTTTAATCCTGTAATGTGTCGAGGGTGCTGCC 58149 36 100.0 38 NNNNNNNNNN .................................... TTGATGTGTAATTGGGAAGACGTCGCGGCTATTGAGGC 58223 36 100.0 40 NNNNNNNNNN .................................... TGACCGTAAGTGGGATCCGACGTCTTTGGATGTCAAAGTC 58299 36 100.0 42 NNNNNNNNNN .................................... CTCAAGAAAGCCACCCGTGTTGGTGAAGTTATCATGGGTAAA 58377 36 100.0 42 NNNNNNNNNN .................................... TTCTCCTACTTCTTTTAAGAAGAAAGCCGCAGAAATGTGTGC 58455 36 100.0 43 NNNNNNNNNN .................................... TTTCCCTCTACAAAGAGATGACCCGTAAGCCCATGAGCCGCAA 58534 36 100.0 41 NNNNNNNNNN .................................... AAAAAAGTTCTAGGGGCTTTTGGCTTTCTCAAGTATTTGGA 58611 36 100.0 36 NNNNNNNNNN .................................... AGATCTTTATTGAGGAGGAGGTGTTACAACCTCCAA 58683 36 100.0 40 NNNNNNNNNN .................................... CCCCGAAGACGGGGGTGAAGTGTTCTACAGCTGCCTTCAA 58759 36 100.0 42 NNNNNNNNNN .................................... GACTACGGTAGCTACGGTTACCTAGTCTTCGCTAGAGGCGAA 58837 36 100.0 36 NNNNNNNNNN .................................... GCCTTTCGGCTTTTAGACGGACTCATACTACCTCCA 58909 36 100.0 42 NNNNNNNNNN .................................... GGATTGAGGTTGACGTACAACCTATAGAAAAAGAGATAGATG 58987 36 100.0 36 NNNNNNNNNN .................................... AGGGGAATGGATTCTAGATCTGATACCTTGGGAATA 59059 36 100.0 38 NNNNNNNNNN .................................... AACCTTATAGCCGTAAGCCTATCCTCAAGAAAGGTAAG 59133 36 100.0 46 NNNNNNNNNN .................................... TTTATTCAAGATAATTGTGTTGCAGAAGTGATTGTTAGAATCTAAA 59215 36 100.0 42 NNNNNNNNNN .................................... GTCCAATGGGGACTGCATTATGCAGGGGGGTCTAAAGAAACT 59293 36 100.0 43 NNNNNNNNNN .................................... AATACTCCGTTTTAGGATTAAATGAAGCTTATTTGGCTTCATT 59372 36 100.0 39 NNNNNNNNNN .................................... TCAGCAGTGAGGGGAGCGGTAGCAAATAGATTAGAGATA 59447 36 100.0 41 NNNNNNNNNN .................................... CATTGAGTGAAAGCGTTGTCTGTTTCCAAGAAATCTACTAC 59524 36 100.0 38 NNNNNNNNNN .................................... AGGCTTAAAATTATGTCTAACGTTATCACTAGAGAAGA 59598 36 100.0 43 NNNNNNNNNN .................................... TCATTGTCACCTTCGTTAGAAGCAGCCCACACTAGAGGATCTA 59677 36 100.0 38 NNNNNNNNNN .................................... TATGTCTAACATTTGTGTCGATTTTGATCGTGCTTGGG 59751 36 100.0 38 NNNNNNNNNN .................................... GGTTCCATTGATTGTTAGCACAGGTTTATTTGATTATT 59825 36 100.0 40 NNNNNNNNNN .................................... TAACCCACTTTTCCTAATCCGACTCTCCCCACCCTGTCGG 59901 36 100.0 38 NNNNNNNNNN .................................... ACCCTCAAGGAGTTCTCAAAGAAGGCTATTCTGATCAT 59975 36 100.0 39 NNNNNNNNNN .................................... TTAATTCAAACTGAGGACGTGCCCTCAGATATGAGAGAA 60050 36 100.0 41 NNNNNNNNNN .................................... CACATTTACAGGAAAACCAAAATGACTACGAAGCAACAAAA 60127 36 100.0 45 NNNNNNNNNN .................................... CAACTGCGTTAAGCCCCGCACTACAGCACGCTGTTTTGAGACAGC 60208 36 100.0 39 NNNNNNNNNN .................................... TTTTGAAACAATCAAAAGAGAGCAGCGGCCTTTATATTC 60283 36 100.0 35 NNNNNNNNNN .................................... ACTCTGGGAAGTTCTTCTCCTTTACCCCAGGGCGA 60354 36 100.0 41 NNNNNNNNNN .................................... CTTCAACTGTTGCGCAGACAATTGCTGCTGCTCCTCAGTAT 60431 36 100.0 38 NNNNNNNNNN .................................... AATAAACCCACTGCAAAGGAATATAAATCGCTTAGAGG 60505 36 100.0 42 NNNNNNNNNN .................................... TCAAAGCGCATACCTTGAATGTTAGCAGTGCCCTTAAGAGCC 60583 36 100.0 41 NNNNNNNNNN .................................... ATATAAACACCCTGTACAATTACGATTTAAAATCGTCTCAA 60660 36 100.0 39 NNNNNNNNNN .................................... CCGATAGAACCCGACAATCATTTCCGCGTCTTGTTCAAT 60735 36 100.0 41 NNNNNNNNNN .................................... TTCTACCTGAACTGGAGCACTATCTCAGTGAAGTCAAGGCA 60812 36 100.0 41 NNNNNNNNNN .................................... ACATGTTTGATCTAACTAATGGTTTAGTTGATGTCACTCTT 60889 36 100.0 39 NNNNNNNNNN .................................... TGCTAATCTAAAAGGGCTATCAATTGAGATAGCCCTTTT 60964 36 100.0 40 NNNNNNNNNN .................................... TCGTCAAGAAGATTGGAGACTGGGTTATTCTCCAAATCGA 61040 36 100.0 38 NNNNNNNNNN .................................... TTCGGCTAACATGTGAACTGGCAGGGCGTGAGCCCATA 61114 36 100.0 39 NNNNNNNNNN .................................... GTCTGAGTTGGATAAAGCTGATTGGGATATACAGAATCA 61189 36 100.0 39 NNNNNNNNNN .................................... TTAGCACTCTTCGTATTCCCTCTGAAGTTCGCAAGGTGG 61264 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 53 36 40 GTTTCCAATCTATTTGCTTCTCAGGTGAAGAGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.50,-2.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [172-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [28.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2839,458] Score: 0.18/0.18 # # Final direction: R [0.55,0.68 Confidence: LOW] >NC_010482 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 444085 25 100.0 40 NNNNNNNNNN ......................... TTCAACTTCCTGACAAGCTTAGCTTCCTCCGCGGGATTAC 444150 25 100.0 39 NNNNNNNNNN ......................... ACGAGCCACGCACAGCTTGGTCGACATAGAGCATCATCA 444214 25 100.0 37 NNNNNNNNNN ......................... ATAATCTGTTGCAATATAAGAGAGCTTTAATTCAGAA 444276 25 100.0 39 NNNNNNNNNN ......................... TCTTTAGTGAGACATGTTCCGCTACCGCCAGCTCCTACA 444340 25 100.0 39 NNNNNNNNNN ......................... TGAAGACAGCTAGATCCAGCCTTGATATGTTTATCACAT 444404 25 100.0 38 NNNNNNNNNN ......................... TGGTGAGAGTAGCTAGGGCTATCGCTAACCTAGCTATC 444467 25 100.0 38 NNNNNNNNNN ......................... TTTCTTACTTCAGCCTCATCACGCGGGAGGACGCCCCA 444530 25 100.0 39 NNNNNNNNNN ......................... TCCGTTCCAATCTATCTGAATATTGATACGAGGAACCTA 444594 25 100.0 38 NNNNNNNNNN ......................... TTTTATCGAACTCATCCAGTACAAGTACCGTCTTCTTC 444657 25 100.0 39 NNNNNNNNNN ......................... AGTGCTTATGTTTAGCTATATTTTGCTGTAGCTATATGC 444721 25 100.0 37 NNNNNNNNNN ......................... TACCTTCCCCTCTTTCTTTTTGGTAAATACTAAATTA 444783 25 100.0 39 NNNNNNNNNN ......................... CCAATAACTGTGAGTGAGTACAGGACGGCTTATTATCTA 444847 25 100.0 39 NNNNNNNNNN ......................... CCAATATCCGCAGCTGGCCTTCAGTATTCCGGAGTTCCA 444911 25 100.0 37 NNNNNNNNNN ......................... TGGTCTTGAACGTGCAGATTTTTCTTTACGTCATCTT 444973 25 100.0 40 NNNNNNNNNN ......................... TTTCATACTGTCTAAACATCAGCTTCTTAACATTGTATTC 445038 25 100.0 37 NNNNNNNNNN ......................... CTCTCCCCCCAGCTCTTCACTACCTCCCTTCCCTCCT 445100 25 100.0 37 NNNNNNNNNN ......................... TGTGATATTGTAATCGAGCCAGCTCGTATCACTCAGC 445162 25 100.0 39 NNNNNNNNNN ......................... ACTTTTAGCGTCTCTAGTAAGTCTCTAACACTTAATTTC 445226 25 100.0 38 NNNNNNNNNN ......................... CTATATTCATCGATGAGAGCTTAGTTTTGAGCTCTGGG 445289 25 100.0 38 NNNNNNNNNN ......................... GCTGTGACCTCTATGACTTCTGATAATACGTGAGATGG 445352 25 100.0 40 NNNNNNNNNN ......................... CTTCTATATAATGTTACTACTGGGAGGGGTAAATTTATCC 445417 25 100.0 38 NNNNNNNNNN ......................... CTATTCACGTCTCCCTTATGCCCATATTTCCTAGCCTT 445480 25 100.0 38 NNNNNNNNNN ......................... TCTAAAAACGCCTTCGCAATCTCCTCAAGACGAGATAT 445543 25 100.0 39 NNNNNNNNNN ......................... GCGAGAGAGAGTAATTCCCCGACCGCAGTGTAAAGCTCC 445607 25 100.0 39 NNNNNNNNNN ......................... TAATATCTGGTTTCGTCGGAATGAAGCTCACGGTATCCG 445671 25 100.0 36 NNNNNNNNNN ......................... TTGTATCGCTCCTATTCGTGTAGAGGTACACATTTG 445732 25 100.0 37 NNNNNNNNNN ......................... TGAGAGTTGTAGAAGATAGCGAATCCCCCGGGATCGG 445794 25 100.0 39 NNNNNNNNNN ......................... TTGGGGTACTGGGACTGTGAAATTCAGCTTCACTGTGTC 445858 25 100.0 39 NNNNNNNNNN ......................... AGGAAGTCTGCAGAATACTGAAGAAAGTGAGAATGTGTC 445922 25 100.0 39 NNNNNNNNNN ......................... GGGTTCCTCTTCCTCGCGGCATTGAGGATCCATTTCGGC 445986 25 100.0 38 NNNNNNNNNN ......................... AGCCGTATTGAGTCGCTCCTCCCACGAGACCCGAGACA 446049 25 100.0 38 NNNNNNNNNN ......................... CCTAACTCATTTTTTGTATCTGAGAAGAGAGTACAAAA 446112 25 100.0 38 NNNNNNNNNN ......................... GCAGGATCCTCCATGCTTTATCCGGGTTCACTTTCTTG 446175 25 100.0 38 NNNNNNNNNN ......................... ACGTTATAGCTAACCTAGCCCTCTTCCCTATCCTATCG 446238 25 100.0 38 NNNNNNNNNN ......................... GATTATGTGAAAAAGAGATTAAAGATAAAAATCAGCTT 446301 25 100.0 41 NNNNNNNNNN ......................... GGGATATCCAGCGGAGGAGCAACTCTCAACGTAAATGCCGC 446367 25 100.0 38 NNNNNNNNNN ......................... ATATTGGCCTTAACTGATCGGCTCGGAGAATTGGACAG 446430 25 100.0 39 NNNNNNNNNN ......................... TAGTAGCACGAGACCCGCTGTGATCAGCATTAATCCAGC 446494 25 100.0 38 NNNNNNNNNN ......................... GATTGGATCAGAGCCTGAAAGGTCACTTAACTTCGTCA 446557 25 100.0 38 NNNNNNNNNN ......................... CCCGGTGCGGTCACGAGCCCCGTAGTTTATTTAATAGA 446620 25 100.0 40 NNNNNNNNNN ......................... TCGAAGCCATCAGCATGCTTACTTACAACATTGTATATAT 446685 25 100.0 37 NNNNNNNNNN ......................... CAATATGCACTAAAAAAACCTCTTTATTACGAACGGG 446747 25 100.0 38 NNNNNNNNNN ......................... ATATAAGGAATCTCCGGAGCCCTTGCCTCAAATTCAGT 446810 25 100.0 38 NNNNNNNNNN ......................... AGAACATCCAGAGCTTGAGCTCCTTCGCATCGCCTCTA 446873 25 100.0 38 NNNNNNNNNN ......................... GTCGGGGGCTCGGGTGCTGGGGTTGTAAGTAAATCAAC 446936 25 100.0 38 NNNNNNNNNN ......................... AATCCAGCTGCCTTGAGGACTCTCGCTTGCCATCCTTG 446999 25 100.0 43 NNNNNNNNNN ......................... AAATCGAGCTACAGCCTTCGTTTTGTAGCCGCGTGTTAACGTA 447067 25 100.0 49 NNNNNNNNNN ......................... AAGACGACATGTTGGGGTGAACGCCACGGATTTCGAAGATTCAACGTTA 447141 25 100.0 39 NNNNNNNNNN ......................... ACGACATGTTGAGCTAAATGCCAGCCCGTCCCGATCATT 447205 25 100.0 37 NNNNNNNNNN ......................... GCTGATACCCAAGCCGAGCTCACGAACGAACAAAAAA 447267 25 100.0 38 NNNNNNNNNN ......................... GAGCTTATTATCTGTGCCGAGCTCTCTACCGTACTCAT 447330 25 100.0 38 NNNNNNNNNN ......................... GAGCTGAACTTGATGCTCACTCTCCGCGCCCCCGAACT 447393 25 100.0 39 NNNNNNNNNN ......................... AATAATGTTGCAAAGTGTGAACGATTTACTCACGCAACT 447457 25 100.0 39 NNNNNNNNNN ......................... ATGTAAACCTTCGCAAAATCCCTAAATCCATCCTCATAC 447521 25 100.0 40 NNNNNNNNNN ......................... TATAGGATGAAGCCCCTCCTCACCACCCTGGAGAGCCTCT 447586 25 100.0 39 NNNNNNNNNN ......................... GATTTAACAAAAACGATTATAGACCAGATCATAGCCCTA 447650 25 100.0 39 NNNNNNNNNN ......................... GAAGATGAAAAAGCTCGCCGTTCTCCTTCTTATAATGCT 447714 25 100.0 39 NNNNNNNNNN ......................... CACCGTAAAGCAACTCCTCGACCCAGCCCACGAGAAAAG 447778 25 100.0 38 NNNNNNNNNN ......................... TAGTCGAGATTCCTGTCCCACGTTCCTATCTTCCGTGT 447841 25 100.0 39 NNNNNNNNNN ......................... CAAAATCACCTCCCGAAACGCCCGATCAGGCCCGTTTTC 447905 25 100.0 39 NNNNNNNNNN ......................... CCTTGTATTCCTCAGCGTCAAACCAGTACTTCTCCTCCT 447969 25 100.0 38 NNNNNNNNNN ......................... AACTCTACTTTCAACTCCCTTTCCGGGATTCAGGTGGA 448032 25 100.0 39 NNNNNNNNNN ......................... GGAGCAGCATCATCCCAGCATGAGCATCCCAGCATCATC 448096 25 100.0 40 NNNNNNNNNN ......................... ATGCTGAATGCAAACAGAAAAAATGCGCGTGGTACGTTAA 448161 25 100.0 38 NNNNNNNNNN ......................... CAAGTCCCATTTATCTCACCTCCTGCTACTCTACGTCT 448224 25 100.0 39 NNNNNNNNNN ......................... GGCTCTGTGCTGTCGTATATCTTCGTTTTCTCCTCGGCG 448288 25 100.0 40 NNNNNNNNNN ......................... CTATATACCCCTCTCATATATCATCGCTATACAAAATTAT 448353 25 100.0 40 NNNNNNNNNN ......................... TTATTTCGCTGAATGGGGCGGGAAGCCCGGCCCCGGCGTC 448418 25 100.0 39 NNNNNNNNNN ......................... GTTGATAATAGTGCCGGAAGCCGATGTCTCTTACACTAT 448482 25 100.0 39 NNNNNNNNNN ......................... TATTGACTGGAACTATCGCTCTCTTTGTTCCATTGGAAA 448546 25 100.0 39 NNNNNNNNNN ......................... AGAGGACCGAGCAGGTTGCTGCTCGTCTTGTATAGAGGT 448610 25 100.0 39 NNNNNNNNNN ......................... AGGCTGACGTTCTCCTTTCTTTGCTGTTCTAGGAAGCCC 448674 25 100.0 37 NNNNNNNNNN ......................... CTGAATCAGGGCTCTCTTCCAGTTCAACAAGTTCTCA 448736 25 100.0 38 NNNNNNNNNN ......................... AGTGATAACTCGGCGTCTCTTTCATCGGACGGCTGCAG 448799 25 100.0 39 NNNNNNNNNN ......................... TTTTGCATCCTCTCGTGAATCGCGTCGGGCCAAGCTTGA 448863 25 100.0 39 NNNNNNNNNN ......................... CTCCTGACGGGTCAGCTCCAGCTTTCTCTGAGCGAACTG 448927 25 100.0 38 NNNNNNNNNN ......................... CTAATCTGCTTGAGCAGTGGCTCGAGTTCTTGCCTGAT 448990 25 100.0 37 NNNNNNNNNN ......................... TAGTAGTTTATAGTCCCTGGGGTGGCAAATATGTAAT 449052 25 100.0 38 NNNNNNNNNN ......................... CTGGTAGTGTTGGCGGTGGAGCGGCGGGAGGAGTGCTA 449115 25 100.0 38 NNNNNNNNNN ......................... CCAAGCTATAGCTCTGATCTATCAGCCAAACGGCCTTA 449178 25 100.0 39 NNNNNNNNNN ......................... GGGAGGACGATCACCGCGTCAGCTCTCGGTCCATACCTC 449242 25 100.0 37 NNNNNNNNNN ......................... TTGACAGCTGGACGCAGTTCATAGCCCATATCGACGA 449304 25 100.0 40 NNNNNNNNNN ......................... AGAAGGCATGGCCCTTGCGTTTCACGCCGCCTAGAGGCGT 449369 25 100.0 36 NNNNNNNNNN ......................... ATTTTTCTATCCTTTTATCATTAAAATGAGCCTAAG 449430 25 100.0 41 NNNNNNNNNN ......................... ACAATCGCCGTGATTGTGAAAGTGAGAGCTGTGCCAGTTGC 449496 25 100.0 39 NNNNNNNNNN ......................... ATTATCGTTGTAGTTGGGACGATCATAGTGTTAGCGTCG 449560 25 100.0 40 NNNNNNNNNN ......................... GCTCAGCTGACGGTAGGTGCTGGAGGGACGCTGTACATAC 449625 25 100.0 37 NNNNNNNNNN ......................... TACCAGTTCTCGTGGAAATCGCTCAGAATTTTGAGAG 449687 25 100.0 39 NNNNNNNNNN ......................... AGACTGGATGAAGAGACAGCTCGAGAGATACAAGGCCTT 449751 25 100.0 39 NNNNNNNNNN ......................... TTCAATTCTTCCCTTTCTCCTATCATCTCCTACCCCTCC 449815 25 100.0 38 NNNNNNNNNN ......................... ATCTATACCCTGAGGAGGCGGTTGATAGGCGAAACTAT 449878 25 100.0 39 NNNNNNNNNN ......................... CTATAGAGATACCAGTAAATCGCGTACAGGTATTCTTAG 449942 25 100.0 38 NNNNNNNNNN ......................... CTCCACCCTCGGTATCAAGCTTAGCCACGAGCTTCCTT 450005 25 100.0 39 NNNNNNNNNN ......................... TTTCCCCGTGAAACCGCAGAAAAATGCCGCTACACAGAC 450069 25 100.0 39 NNNNNNNNNN ......................... CGTGATAGAGTTCATATTCACACCTCGATCTGAGGAGTG 450133 25 100.0 39 NNNNNNNNNN ......................... AGGATGAGGATATCGAAATCCTCAAGGCCATAAAGAGGC 450197 25 100.0 39 NNNNNNNNNN ......................... TTTCTTCTATCTCATCGTAATGTGACTCTATGAAAACTG 450261 25 100.0 37 NNNNNNNNNN ......................... TTGGTAATGTTGGTAACTTGGTAGGGCTCATGATCCA 450323 25 100.0 39 NNNNNNNNNN ......................... GGCAGATATACTGCCACCACGTCGTCGCTAGCGGCCCCC 450387 25 100.0 40 NNNNNNNNNN ......................... TCAGTATGTTGTAGAGCTCATCATAGCTGAAGTTAACTGC 450452 25 100.0 37 NNNNNNNNNN ......................... TTGACGCGTTTGAATATGAAACTCATCATCACAGTCT 450514 25 100.0 39 NNNNNNNNNN ......................... CTAAGCATGTCATAGGCTATTTGTTCGAGCTCACCACGC 450578 25 100.0 39 NNNNNNNNNN ......................... CTAAGGATTGGCAAACTTGGTAAAGTTGGTAACTTGGTA 450642 25 100.0 38 NNNNNNNNNN ......................... ATATGTTAACTTGAGGAACGTCGCGGATCCGAAAATAG 450705 25 100.0 36 NNNNNNNNNN ......................... TTCTGTCGAGTATCGTAGCCTTCTTTACAATGTCCT 450766 25 100.0 40 NNNNNNNNNN ......................... TTGCTCTCCTCGATCGTCTTCTTCATATCTCTGATCTTCG 450831 25 100.0 38 NNNNNNNNNN ......................... AGCTCTATGTTCCTTATCCTCCTCAGGTCCTTCTCAGT 450894 25 100.0 37 NNNNNNNNNN ......................... GTGGTGGAACGGGGACTTCAGAGTGAATATAATGCAA 450956 25 100.0 39 NNNNNNNNNN ......................... CTAACACTTAATTTCTTCTCTGGCGGTTTTTCTTCCTCT 451020 25 100.0 39 NNNNNNNNNN ......................... CCTCGTGGGCGTCCTCCAAGACGCCCCCGAGGTCAACCG 451084 25 100.0 38 NNNNNNNNNN ......................... AGCTCTATGTTCCTTATCCTCCTCAGGTCCTTCTCAGT 451147 25 100.0 37 NNNNNNNNNN ......................... GTGGTGGAACGGGGACTTCAGAGTGAATATAATGCAA 451209 25 100.0 39 NNNNNNNNNN ......................... CTAACACTTAATTTCTTCTCTGGCGGTTTTTCTTCCTCT 451273 25 100.0 39 NNNNNNNNNN ......................... CCTCGTGGGCGTCCTCCAAGACGCCCCCGAGGTCAACCG 451337 25 100.0 39 NNNNNNNNNN ......................... TAAGAGGATCGGGAGCGATCAAATAACCGACCAAATTCA 451401 25 100.0 39 NNNNNNNNNN ......................... CTCCGATCGTAGTGATGTTGGTAGTCGCTACGCATTACG 451465 25 100.0 37 NNNNNNNNNN ......................... CCCTGATCAATTATTCGGGTCTCCTCCTCCATATCAT 451527 25 100.0 39 NNNNNNNNNN ......................... AGTGGGGTCCAGTGGGGAGGAGCTGACCAAGTGGGGTCC 451591 25 100.0 41 NNNNNNNNNN ......................... GCAGGACAGAGTGACGAGCGTTTTCGACCCAGAGATCCTCC 451657 25 100.0 1 NNNNNNNNNN ..................C...G.. NNNNNNNNNN ========== ====== ====== ====== ========== ========================= 120 25 38 GTCTCGATGAAAAGAGGATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [452,819] Score: 0/0.18 # # Final direction: F [4.91,0 Confidence: HIGH] >NC_010483 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1062015 30 100.0 36 NNNNNNNNNN .........A.................... TGGCTTACTATAGGCATACTATAGACGGCTTAGGTT 1062081 30 100.0 37 NNNNNNNNNN .........A.................... ATTTCGTAGCAGTCTGCGAGCACGTCGTTCCAATAGA 1062148 30 100.0 36 NNNNNNNNNN .........A.................... CCGCGCCCTGTTGTCTAAATATGTTGTCGACTACAG 1062214 30 100.0 40 NNNNNNNNNN .........A.................... AGGATAGCACCTTGACCGCTTTCTTGCCGTCGAAACTTGC 1062284 30 100.0 35 NNNNNNNNNN .........A.................... CCGTTTGATGTACAAACTTTTCCTCAACTCTTTGT 1062349 30 100.0 35 NNNNNNNNNN .........A.................... TGCCGGTAAGAGTCCCATCCTACATCATGCAACCT 1062414 30 100.0 36 NNNNNNNNNN .........A.................... AAGCCGTATGCGTAGGAGAGGGCGAATATTTCCTTG 1062480 30 100.0 37 NNNNNNNNNN .........A.................... TCGTACGTGTTGCATACACTGTTCTATGTACTTTCAA 1062547 30 100.0 36 NNNNNNNNNN .........A.................... CATGTGATGCGATCGCAGTAAACGAATGAAACGAAT 1062613 30 100.0 36 NNNNNNNNNN .........A.................... TAGATTTCACAGTCACAGCATCAAATAATGTAGCAA 1062679 30 100.0 36 NNNNNNNNNN .........A.................... AATTGAACCTTGTTGCAACATCGTTTTCTGCGTTCA 1062745 30 100.0 36 NNNNNNNNNN .........A.................... ATTTCGAGGATAATCCTGAAGAATTCAAAGAAGAAT 1062811 30 100.0 36 NNNNNNNNNN .........A.................... TAGGCTTTCTTGAGATACCATGCACCCATGAAGACA 1062877 30 100.0 36 NNNNNNNNNN .........A.................... CTTCAATCGTACCATTTTGCCCAGCCCATGTCAAGT 1062943 30 100.0 37 NNNNNNNNNN .............................. CGCTTGAGTTCGGCGGCAAACCCTATAGGCATTCAGT 1063010 30 100.0 37 NNNNNNNNNN .............................. TCAGGGCTGGCAGTCGTTCCCAGTGTCGTCGCATATC 1063077 30 100.0 38 NNNNNNNNNN .............................. TCCGCTAATTGACTGCCCCACCACCCCATTTGAATACC 1063145 30 100.0 37 NNNNNNNNNN .............................. TGAAACCAAAAAACCATTTTATGTGTGAAGAAGAACA 1063212 30 100.0 37 NNNNNNNNNN .............................. TGAAACCAAAAAACCATTTTATGTGTGAAGAAGAACA 1063279 30 100.0 37 NNNNNNNNNN .............................. TGAAACCAAAAAACCATTTTATGTGTGAAGAAGAACA 1063346 30 100.0 37 NNNNNNNNNN .............................. TGAAACCAAAAAACCATTTTATGTGTGAAGAAGAACA 1063413 30 100.0 36 NNNNNNNNNN .............................. TTATTGATGAGAAAAGCTTCACACCGGTGGCAAATA 1063479 30 100.0 36 NNNNNNNNNN .............................. CGTAGTTGCCTTTTTCAGTTGTGATTATCTTCCCGC 1063545 30 100.0 36 NNNNNNNNNN .............................. TCCGCTAAACTCCTGAAATACTCGTCAGCGATATCG 1063611 30 100.0 36 NNNNNNNNNN .............................. CATCAGACTTGCCGGCTACATTGCAGGCTACAACTA 1063677 30 100.0 41 NNNNNNNNNN .............................. CAGGAATGCCCTTGAATAAGCCAAAAGCGGGCGAGGCACGT 1063748 30 100.0 35 NNNNNNNNNN .............................. CGGTCTGACTCAAAGGTAACAACTATTTTCCCATC 1063813 30 100.0 38 NNNNNNNNNN .............................. CTACACTCGGCTGATGTGTGTGCGCGGTGAGGTAGATA 1063881 30 100.0 35 NNNNNNNNNN .............................. CTACAAAGCTTGTTGCGAAGGGTTTTTCTTCAATT 1063946 30 100.0 35 NNNNNNNNNN .............................. ATCCAAACCGGATACTTCCAGAGATCTTTCACAGC 1064011 30 100.0 35 NNNNNNNNNN .........A.................... AAATAATCGTGCTGATAATCCGTCGGTACGAAATC 1064076 30 100.0 23 NNNNNNNNNN ............................G. TCCGGTTTCAATAATTCCTTACT 1064129 30 100.0 1 NNNNNNNNNN ........TT......TC....GCAATGT. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 33 30 36 GTTTCAATAGTTCCTTAGAGGTATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.80,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [636,71] Score: 0.18/0.18 # # Final direction: R [0.96,4.5 Confidence: MEDIUM] >NC_010483 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1335694 30 96.7 36 CTCGGTCAGT ....................T......... AGAGAACGGGACACGTGGTGGGAGGGAATCAAAGAT 1335760 30 96.7 35 AATCAAAGAT ....................C......... CCATACAAGGTCTTTCACTCGCCAAGAGGCTCATT 1335825 30 100.0 37 GAGGCTCATT .............................. ACAAAGCCAACGTGATCGAGATAAGGTACAAAGACAG 1335892 30 96.7 34 ACAAAGACAG ....................T......... TCTCTACGATGATGTTGTTGCCGTCAAGCCTCTA 1335956 30 96.7 36 CAAGCCTCTA ....................T......... TTTGCTAATCCACGACGGCACAGACAACGAATTCTT 1336022 30 96.7 36 ACGAATTCTT ....................T......... ATATCGGTTCGAGCGCTTTCCTGAATGCTGTGTCTA 1336088 30 100.0 36 GCTGTGTCTA .............................. ACGCCTTATCGTTAAACGAAATGACACGATAGTAGT 1336154 30 100.0 36 CGATAGTAGT .............................. TTTTGAGATTACACTCGAAGACATAGATATAGTTGT 1336220 30 100.0 ATATAGTTGT .............................. CCGTTGAGTT ========== ====== ====== ====== ========== ============================== 9 30 35 GTTTCCATACCTCTAAGGAAGTATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.40,-5.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [58.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [83,571] Score: 0.18/0.18 # # Final direction: F [4.5,1.23 Confidence: MEDIUM] >NC_010483 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1223301 30 100.0 37 AACTCAACGG .............................. TGAGTACAAAGATAAAGCCCGCAACTGCGAAGAGGAT 1223368 30 100.0 37 CGAAGAGGAT .............................. ATGGATATCTTGCATATCAGGCAAACACCGTTGGTTT 1223435 30 100.0 37 CCGTTGGTTT .............................. TCTGCTATCTCGACAAGAAGCTCGTATGCGTTCACGC 1223502 30 100.0 35 GCGTTCACGC .............................. AGCTCTTCGGCGAAGCGTATGACGTCGCAGAGCTC 1223567 30 100.0 36 CGCAGAGCTC .............................. ACGCCGATCATGTTGAGCTTATAACGGAGGAATCGC 1223633 30 100.0 39 GAGGAATCGC .............................. GGCCCTGATCTGCATCTATGTACACCCACGCAGAGATTG 1223702 30 100.0 36 GCAGAGATTG .............................. AGGAATTCGTTCGCATCCTCGACAGCATCAAAGACC 1223768 30 100.0 38 ATCAAAGACC .............................. AGTCAGGAAGCCCGAAGCAAGCGTGACGGTTATTCCCC 1223836 30 100.0 35 GTTATTCCCC .............................. CTTTTCATCATTCCACCTCCCGACCTTCAGTATCC 1223901 30 100.0 37 TTCAGTATCC .............................. AGTTCGATGGGAAACTTGGGAAAGCTGAAATATACGC 1223968 30 100.0 37 AAATATACGC .............................. ACTTTTTTCTTGCTTTCGTTTATACGTCGCCAATCCA 1224035 30 100.0 36 CGCCAATCCA .............................. TCTCCCTCCATAACTCTTTGATTTCAGGATCCATCC 1224101 30 100.0 36 GGATCCATCC .............................. GAATTGCTCTTGTACGAAAAGCTCGAATCCTTCGTC 1224167 30 100.0 36 ATCCTTCGTC .............................. TCAGAGGAGACTACGACCTTTTCGAATACGCCGACA 1224233 30 96.7 TACGCCGACA .........A.................... GCTCCTCCCT ========== ====== ====== ====== ========== ============================== 15 30 36 GTTTCAATACTTCCTTAGAGGTATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.40,-2.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [65.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [646,204] Score: 0.18/0.18 # # Final direction: R [1.23,4.5 Confidence: MEDIUM] >NC_010483 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 544183 30 96.7 39 AACTCAACGG .........G.................... TTTCTTATATGATGTATGACCAGTCCAACTTGTTTTCAT 544252 30 96.7 36 TTGTTTTCAT .........G.................... CCGATATTGAAAAAGAGCTCGAATAATGGAAAAATG 544318 30 96.7 36 TGGAAAAATG .........G.................... TATATTTTGCCGTGTCAGGATATCCGATGTATGATT 544384 30 96.7 35 ATGTATGATT .........G.................... AGCACTTCCTTTTCTCCCTCAAGTTCCTTGAGTTT 544449 30 96.7 35 CCTTGAGTTT .........G.................... AAACTGGGGGAGGGTGCTACAGATGAAGACAATCA 544514 30 96.7 37 AAGACAATCA .........G.................... GAAGTAGAGATAAATCTATATCCGCTAAAGAAATCGC 544581 30 96.7 36 AAGAAATCGC .........G.................... TGGTAAATTCGGACAACAAAATGAATATCGGGAAAT 544647 30 100.0 38 ATCGGGAAAT .............................. GTTTCTGTGAATGTTACATAAATGTATTGCGTTTCGCT 544715 30 100.0 36 GCGTTTCGCT .............................. CAATTTATTGTGCCCTTTAGTTGTCCTCTCCACTCT 544781 30 100.0 35 TCTCCACTCT .............................. ACAACAGCGAAGTCGTCGTCGACCGTCATCACTAT 544846 30 100.0 35 TCATCACTAT .............................. CATTTTTGAAGTATTCCTCATCATCAGAGTTTTCG 544911 30 100.0 35 AGAGTTTTCG .............................. GCGACCTCAAAAAGCAGGGTCTGGTAGAACCTTCG 544976 30 100.0 37 AGAACCTTCG .............................. ACAGGACCAGGCCCTGTGTAACCACCTTCCTGTTTGC 545043 30 100.0 36 TCCTGTTTGC .............................. AACCGGCGGGCGACATGGATAAAAATGAACGGAAAC 545109 30 100.0 36 GAACGGAAAC .............................. GAGATCCAACAAAATATCTACCACTTGCTTGGGACC 545175 30 96.7 GCTTGGGACC ............................C. ACCCGATT ========== ====== ====== ====== ========== ============================== 16 30 36 GTTTCAATACTTCCTTAGAGGTATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.40,-2.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [658,111] Score: 0.18/0.18 # # Final direction: R [1.23,4.5 Confidence: MEDIUM] >NC_010483 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 557434 30 100.0 36 GAAAAATCGT .............................. TGAAGGAATGGAGAAGCGTAACAATCTATTATAACG 557500 30 100.0 39 TATTATAACG .............................. GAAGCAGGAACTTTTGCAAGCTCTTAGCAGGGCATTCTA 557569 30 100.0 38 GGGCATTCTA .............................. GTGATCAAAAGGAGTTTGCAAGATGGCAGAGTAATTTT 557637 30 100.0 38 GAGTAATTTT .............................. TCGGGACTGTAAACGAGTGCTCCGGCGGAAATGCCCAA 557705 30 100.0 38 AAATGCCCAA .............................. AAAGTAATGAGCTGGGTCAAAATTGCCAAAGAAACATA 557773 30 100.0 35 AAGAAACATA .............................. CCTCCCTCACAGCAAGTCTGCGAGTTCTAAAAGGT 557838 30 100.0 38 TCTAAAAGGT .............................. CTTGTATGCATAGTAAGAATTCTTCAATCCTTTCTTTC 557906 30 100.0 36 CCTTTCTTTC .............................. ATGCGACCTTTATAAGAAACTCGACTGGTTTTTCGA 557972 30 100.0 36 GGTTTTTCGA .............................. TCCTGAAAACAAGGAACAACAGTAGCACGAAAAGTG 558038 30 100.0 37 ACGAAAAGTG .............................. TTAAACGTGCAAACAGATTGATGAAGGGAAAGTCGGC 558105 30 100.0 36 GAAAGTCGGC .............................. CAAGCATGAATGGACACTTGCACCACAGCCAGGCTT 558171 30 100.0 38 AGCCAGGCTT .............................. GATCCACGTCCTTGGGGAAGAAGGATACATATCCCCCA 558239 30 100.0 40 ATATCCCCCA .............................. GAGAAGAACAAAAAGGAGAAGATCAAGAAGAAAAAGAAGG 558309 30 100.0 39 AAAAAGAAGG .............................. AGGGAAACCCGTTCATCGAATTCCCTCTGCACGCACAAA 558378 30 100.0 36 CACGCACAAA .............................. CTCCAGCATTAAGCAACTTGCTGACGAAATCACCTT 558444 30 100.0 37 AAATCACCTT .............................. GGTTTAAAACGAACGATGGCTGGATAGCTGTAGAGTT 558511 30 100.0 35 CTGTAGAGTT .............................. CGTGTCCTGGTACTGGCTTATCGACACAGACGAAG 558576 30 100.0 39 ACAGACGAAG .............................. GCAAGCGATTTTCTGCGTCACCAAAGCACGTGGGGATTG 558645 30 100.0 36 GTGGGGATTG .............................. AGTTTGACCTTTCACAAGAGAGAAGGGATTATGAAG 558711 30 100.0 35 GATTATGAAG .............................. GTGCTCCCTTACTCTTTCATATCCACTACAAACAT 558776 30 100.0 35 CTACAAACAT .............................. GTGCTCCCTTACTCTTTCATATCCACTACAAACAT 558841 30 100.0 38 CTACAAACAT .............................. GCTGGCACCATCTTCCGAACTCAAATACCGTCGCCAGG 558909 30 100.0 38 CGTCGCCAGG .............................. TAAGCTCGCCTCCTTTTTTAAATTAAATCGTCCAGATT 558977 30 100.0 CGTCCAGATT .............................. CCGTTGAGTT ========== ====== ====== ====== ========== ============================== 24 30 37 GTTTCCATACCTCTAAGGAACTATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [151,628] Score: 0.18/0.18 # # Final direction: F [4.5,0.55 Confidence: HIGH] >NC_010483 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 590952 30 96.7 36 ACAAAACAGC ....................T......... GTTGAGACCATTCGTCAGGATTTTCGGGTGAATAGT 591018 30 100.0 37 GGTGAATAGT .............................. GTACATGGGTTGCTGCGGCAATGAATCCAGAAACCGA 591085 30 100.0 38 CAGAAACCGA .............................. GATGATGATGTAATTGTTCTTTCAGGTAGTAGATACGA 591153 30 100.0 37 GTAGATACGA .............................. TCACAAAAGACGGAAAAGTCGTCGCGAAAGGAAAAGA 591220 30 100.0 36 AAGGAAAAGA .............................. GGATCAGGAAAGAGGTCTGGCCAACGGTCGAGGAAT 591286 30 100.0 GTCGAGGAAT .............................. CGTTGAGTTCA ========== ====== ====== ====== ========== ============================== 6 30 36 GTTTCCATACCTCTAAGGAACTATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [136,1220] Score: 0.18/0.18 # # Final direction: F [4.5,0.96 Confidence: MEDIUM] >NC_010483 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 974478 30 83.3 37 GGGGTTATTT -...T.G...A.T................. AGCTTGAGGAGATTTACTCATCACCTGGATATGTTTA 974545 30 96.7 37 GATATGTTTA ....................T......... TGTGGTTGCTCCAGTCCTGGCTGCGTAATGAAATTAA 974612 30 96.7 38 ATGAAATTAA ....................C......... GAGAACGACGATCTCAAAAAGCAACTTGAGGAATATTT 974680 30 100.0 38 AGGAATATTT .............................. GCAGTCAAGCCAGAGCTCGAGGAGATAGACGTTGTCCT 974748 30 100.0 35 ACGTTGTCCT .............................. ACCTAGCATTGTGTGTATGAGGATGTAGTGGTTTG 974813 30 100.0 35 TAGTGGTTTG .............................. TTCCAATCCCTTTTTGAACATCTCCCAAAGCCATT 974878 30 100.0 37 CAAAGCCATT .............................. CAGTTAGCAAGATCCGACATTTTTGCGATGATGAAGG 974945 30 100.0 37 ATGATGAAGG .............................. TCTTCGCAAGCAGGAATGATACGCTGTTTGTCTGTTT 975012 30 100.0 37 TTGTCTGTTT .............................. ATGCTGTCGTTGAAGTTTGTTTTTCCTTCGCTGTAGA 975079 30 100.0 38 TCGCTGTAGA .............................. CTAAGGTGGGGGTGAAAGGTATGGTGAAGGTGAAGGCT 975147 30 100.0 35 GGTGAAGGCT .............................. CCGGTGGGGTCGCTGGGTGTGTCCAGAGGCGCCCT 975212 30 100.0 37 GAGGCGCCCT .............................. TTCACATAGCTGCTTGGAATCCTGGCGAATCAAAAGT 975279 30 100.0 36 AATCAAAAGT .............................. GTTGCGAGTAGATGATGATTTTTACGACGATACTAT 975345 30 100.0 36 ACGATACTAT .............................. CAGCCACAAATGACCATAAAAACTTGGTGCTTGCCG 975411 30 100.0 37 GTGCTTGCCG .............................. GCATATTCGGTCTTATGCTGTTTTTCAGAAGTAGAGA 975478 30 100.0 36 GAAGTAGAGA .............................. ACGTAGATTTAACTTGACATAGGAATTGTCAAATGG 975544 30 96.7 40 TGTCAAATGG ....................T......... ATACCTTCGTAGTTACCCTCACCAGAGACGCCAACGGCTT 975614 30 96.7 39 CCAACGGCTT ....................T......... CAAGAGAAGTAAGAATAGCTGTAAGATTCGCAAATGCTT 975683 30 96.7 37 GCAAATGCTT ....................T......... AGGGCTTGTTGCAAATCTTCTCATTGCCCGCTACGAC 975750 30 96.7 39 CCGCTACGAC ....................T......... TGTGTTCGAGATCGTCAACTACCTCACGACGAAGATCTA 975819 30 96.7 35 CGAAGATCTA ....................T......... CTATAGGCATACTATAGTTTGCTATAGGCATACTA 975884 30 96.7 35 AGGCATACTA ....................T......... CTGCATAATCTTCTGCGATGTTTCTTGTGTAAAAG 975949 30 96.7 35 TGTGTAAAAG ....................T......... CAGAATCAACTCGAAGACCTTCAGCAAACAACAGC 976014 30 96.7 37 AAACAACAGC ....................T......... AGACTAAGTGGGAAAAGCTCGCAGAGGAAGATCCAAC 976081 30 96.7 37 AAGATCCAAC ....................T......... TCGTCGAGTGGAGCGATGTTGTGTTCAGCATAAGCGA 976148 30 96.7 38 GCATAAGCGA ....................T......... GTTGTCAACAAGCAAAGCACTCGGTACGAATTTATCCC 976216 30 96.7 35 AATTTATCCC ....................T......... CATGGTAGAAGCGGGTAAGTGGACGATAGAAGACG 976281 30 96.7 ATAGAAGACG ....................T......... CCGTTGAGTT ========== ====== ====== ====== ========== ============================== 28 30 36 GTTTCCATACCTCTAAGGAAGTATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.40,-5.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [51,636] Score: 0.18/0.18 # # Final direction: F [4.5,0.96 Confidence: MEDIUM] >NC_010498 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2950900 29 100.0 32 CCAGTGCGTC ............................. GCGGTTATCCGTTACTTCCAATTCATCACTCC 2950961 29 96.6 32 TCATCACTCC ....................G........ ATACAGAGGAAGTTAAGGAACTTAAGGCGCAA 2951022 29 96.6 32 TAAGGCGCAA ....................G........ TGTTGCGTACTCTGGTCCGGTCGCTAAAACCC 2951083 29 96.6 32 GCTAAAACCC ....................G........ GCGGAATGGTTGAGGAGCAGCCAGTTACCCTG 2951144 29 100.0 32 AGTTACCCTG ............................. GTACCGGTGCTGGCTGGTAGCGAATACACAGA 2951205 29 96.6 32 AATACACAGA G............................ TCGTGAGCGCGAGAACGCGCGAACGTTTACTG 2951266 29 100.0 32 ACGTTTACTG ............................. AGCATTAATCCCCACCAGCTCGACGTGTGCGG 2951327 29 100.0 32 ACGTGTGCGG ............................. GGCCAGTTGATAGCCTCGCCGGATTCAGTCGT 2951388 29 100.0 32 ATTCAGTCGT ............................. TTTTTTTTGTACACTCATCACACCATCAACGA 2951449 29 100.0 32 CCATCAACGA ............................. CATTTGAGCGACGTAGCGGAAAATACGATCGC 2951510 29 100.0 32 ATACGATCGC ............................. TCCTGGAGTGACTACATTCCCGTTAATACCAA 2951571 29 100.0 32 TTAATACCAA ............................. CGCACCAACAAACGCACTACACCACGGAGTTT 2951632 29 100.0 32 CACGGAGTTT ............................. TCATACTGCTCCCACACCGAAAGCGCGGCAGC 2951693 29 100.0 32 GCGCGGCAGC ............................. CGGAGGAAGTACCACGCCTGACCAGCGTTGAC 2951754 29 100.0 32 CAGCGTTGAC ............................. GCGTGTCGGCAAATCCCGAGGAAATAGAACCC 2951815 29 100.0 337 AATAGAACCC ............................. CCTTTCAGCATGGCCACAGCTTCGCTCCCTGGCGGTTTATCCCCGCTGGCGCAGGGAACACTTTACGTCTATTTTTGCGTAAGGTGCGCCAGCCGGTTTATCCCCGCTGGCGCAGGGAACACTTCACCATCAACGCCCGTTTCGAAATTAATTTCGGTTTATCCCCGCTGGCGCAGGGAACACGCTGAACTGGAACCCGCTTTACCGCTTCTTCCCGGTTTATCCCCGCTGGCGCAGGGAACACGACGTTTCTGTCGCGGGCGTTGTCACGTTCACCGGTTTATCCCCGCTGGCGCAGGGAACACAGCAAGGCAGTATGAAATGCCCTTATGGTCAC 2952181 29 100.0 TTATGGTCAC ............................. ACTAAGCATA ========== ====== ====== ====== ========== ============================= 17 29 51 CGGTTTATCCCCGCTGGCGCAGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [5,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.30,-11.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [85,98] Score: 0/0.18 # # Final direction: R [0,1.05 Confidence: HIGH] >NC_010498 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2951876 29 100.0 32 CGCTCCCTGG ............................. TTTACGTCTATTTTTGCGTAAGGTGCGCCAGC 2951937 29 100.0 32 GTGCGCCAGC ............................. TTCACCATCAACGCCCGTTTCGAAATTAATTT 2951998 29 100.0 32 AAATTAATTT ............................. GCTGAACTGGAACCCGCTTTACCGCTTCTTCC 2952059 29 100.0 32 CGCTTCTTCC ............................. GACGTTTCTGTCGCGGGCGTTGTCACGTTCAC 2952120 29 100.0 32 TCACGTTCAC ............................. AGCAAGGCAGTATGAAATGCCCTTATGGTCAC 2952181 29 100.0 TTATGGTCAC ............................. ACTAAGCATA ========== ====== ====== ====== ========== ============================= 6 29 32 CGGTTTATCCCCGCTGGCGCAGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [5,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.30,-11.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [36.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1061,98] Score: 0.18/0.18 # # Final direction: R [0.18,0.64 Confidence: MEDIUM] >NC_010511 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 6320607 35 94.3 31 TGATGTTCAT ........T.........................A CTGCGGTGCACGGTCTCGGTCTTGTGCTCCA 6320673 35 100.0 34 TTGTGCTCCA ................................... GTTGCCGGCCGGCGACACCGTGATGTCAAGCTGT 6320742 35 97.1 33 GTCAAGCTGT .................................G. GCCCTGCCGCCCGGCTGGCGCGCCCTGACCGAG 6320810 35 97.1 32 CCTGACCGAG ......................A............ TGCAGCAGCAGCAGCGACACCATGTGCGTGTT 6320877 35 100.0 33 TGTGCGTGTT ................................... GCCCGCGCCCGTCGCGCGCCACGCGGTGTCGGC 6320945 35 100.0 CGGTGTCGGC ................................... CGCCACGATA ========== ====== ====== ====== ========== =================================== 6 35 32 GTTTCAATCCGCACCCCCGTGAGGGGGGTGAACCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [6,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-15.60,-14.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [35.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [803,342] Score: 0.18/0.18 # # Final direction: R [0.82,4.91 Confidence: HIGH] >NC_010511 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 1943788 31 96.8 34 GAGTGGCGCC .............................T. CGGGTTTTTGCCCCCAACCACCCCGACCTGTCGA 1943853 31 100.0 34 GACCTGTCGA ............................... GCCTGCTGCTACCCTCTCTGCGCCGAGGCCATCC 1943918 31 100.0 35 GAGGCCATCC ............................... ATATGAACAACGGTTGGGCACTCAACAATGTCGAC 1943984 31 100.0 35 CAATGTCGAC ............................... AAGGCGACCGTGCCCGCGATCATCGAGGTGCGGTG 1944050 31 96.8 34 AGGTGCGGTG ....................T.......... GCCGTCGGCGCCTGGTCGCTGCCCGGCGACACGC 1944115 31 100.0 GGCGACACGC ............................... AACGGGCGCGCCCCGCGTTACCGGGCGCACGCCCATTGC ========== ====== ====== ====== ========== =============================== 6 31 34 ATCGCCCCCTCGCGGGGGCGCGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [28.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [183,128] Score: 0/0.18 # # Final direction: F [5.14,0.41 Confidence: HIGH] >NC_010511 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 2625133 31 100.0 35 NNNNNNNNNN ............................... GTGCACGATACGACCGGCATGGGGGCGGGTGACGC 2625199 31 100.0 34 NNNNNNNNNN ............................... TGTCTCCGTCCGCCTACAACGGGTTGATCACCCG 2625264 31 100.0 33 NNNNNNNNNN ............................... TTGCTGCGGCCTTGATCGTCATTCGATCCTGGC 2625328 31 100.0 35 NNNNNNNNNN ............................... GTCACGCATTGGATGCCCGTCCCTGAACCGCCGCC 2625394 31 100.0 36 NNNNNNNNNN ............................... TGAGCATGACGGCATCGCTTCAGACACCCTCCGAGG 2625461 31 100.0 35 NNNNNNNNNN ............................... CGCTACGAGGAGCTCAATCAGTTCATTATGGCCGG 2625527 31 100.0 34 NNNNNNNNNN ............................... AACGCAAGCGCGACGCCGGTTCGACTTCGGCTTT 2625592 31 100.0 35 NNNNNNNNNN ..........A.................... CAGTCGTACCAGACCTCGGGCGGGCGGCTGCCGAG 2625658 31 100.0 1 NNNNNNNNNN ............................T.A NNNNNNNNNN ========== ====== ====== ====== ========== =============================== 9 31 34 ATCGCCCCCTCGCGGGGGCGCGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [30.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [183,261] Score: 0/0.18 # # Final direction: F [5.55,0 Confidence: HIGH] >NC_010511 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =========================== ====== 6319863 27 100.0 40 NNNNNNNNNN ...........G...T...G....... TGAACTCGGCGCCGGCCTTGCCGTCCTTTAGCGCCTGACA 6319930 27 100.0 40 NNNNNNNNNN ........................... TGAACCTGAGCCGTGATGTCGGGGTGCCGCGCGCGCCGGA 6319997 27 100.0 41 NNNNNNNNNN ........................... TGAACCCCGGTCGTCAACTCGCGATTGCAGCCGTCAGAGCC 6320065 27 100.0 40 NNNNNNNNNN ........................... TGAACGCGGTCGGGTCCCCGAACAGATCCGCCTCGACCAG 6320132 27 100.0 39 NNNNNNNNNN ...................C....... TGAACGGGGATGGCCCCTCGGCCAGCACGCGTCGCAGGA 6320198 27 100.0 41 NNNNNNNNNN ........................... TGAACCCGGACGGTGACGGTGCCCGCACCCATCTCGTTAGG 6320266 27 100.0 40 NNNNNNNNNN ........................... TGAACCAGGACGGCCAGGGCGGCGCGCTGCTCTTCCTCAA 6320333 27 100.0 40 NNNNNNNNNN ................T.......... TGACCCCCCGGTAGCAGTGCTCTTTCAGCTCATCGATCAC 6320400 27 100.0 41 NNNNNNNNNN ........................... GTGAACCGCCCGCCGCTCGTCTACGTGGTGGCCGCGGTGGA 6320468 27 100.0 40 NNNNNNNNNN ........................... GTGAACACGGGGCCGGGCTCTCCCGGGACACCGCCAACCT 6320535 27 100.0 45 NNNNNNNNNN ........................... GGGGTGAACCGGGCCGAGCCGCTCGGTGTACTTGATGATGTTCAT 6320607 27 100.0 39 NNNNNNNNNN ........T.................. GTGAACCACTGCGGTGCACGGTCTCGGTCTTGTGCTCCA 6320673 27 100.0 42 NNNNNNNNNN ........................... GTGAACCCGTTGCCGGCCGGCGACACCGTGATGTCAAGCTGT 6320742 27 100.0 41 NNNNNNNNNN ........................... GTGAACGCGCCCTGCCGCCCGGCTGGCGCGCCCTGACCGAG 6320810 27 100.0 40 NNNNNNNNNN ......................A.... GTGAACCCTGCAGCAGCAGCAGCGACACCATGTGCGTGTT 6320877 27 100.0 41 NNNNNNNNNN ........................... GTGAACCCGCCCGCGCCCGTCGCGCGCCACGCGGTGTCGGC 6320945 27 100.0 1 NNNNNNNNNN ........................... NNNNNNNNNN ========== ====== ====== ====== ========== =========================== 17 27 40 GTTTCAATCCGCACCCCCGTGAGGGGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [23.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [59,350] Score: 0.18/0.18 # # Final direction: R [0,6.1 Confidence: HIGH] >NC_010516 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1031479 28 100.0 36 NNNNNNNNNN ....T.....T..A.T............ TTTGTTTTCTTTATATTCGGATATTAAATATTCTAT 1031543 28 100.0 39 NNNNNNNNNN ......C..................... GACTTAACTAAAGCTATGTGCTTTTGTTGGGAGAGACGT 1031610 28 100.0 40 NNNNNNNNNN .............A.............. GAATTATCCATTTATAGGTAATTAATTTAATTAAATACGC 1031678 28 100.0 37 NNNNNNNNNN ............................ GTATGTTTACATTTGTATAGTTGCTTTTCATCAAAGC 1031743 28 100.0 38 NNNNNNNNNN ............................ TTTATTTTTGTTGCTTCTTTTATAGTTTTATTTAATGC 1031809 28 100.0 37 NNNNNNNNNN ............................ GTATCTTCTGGGAATAAATTAGGTATTTACAACCAAT 1031874 28 100.0 1 NNNNNNNNNN .............A.............. NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 7 28 37 TGAACATTAACATGAGATGTATTTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:78.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [78.3-76.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [436,113] Score: 0.18/0.18 # # Final direction: R [0.18,0.41 Confidence: MEDIUM] >NC_010524 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1231964 37 100.0 35 NNNNNNNNNN ..................................... GCTGGCCGGCTGCCGGTGCACCGCGTGCGCGATCG 1232036 37 100.0 35 NNNNNNNNNN ..................................... ACGGCGCCAAGGTCGACGCCGAGCACCTCTCGGTG 1232108 37 100.0 35 NNNNNNNNNN ..................................... GCCGTGCAGACCGACGAGGTCTTCACCCTGGCCAA 1232180 37 100.0 34 NNNNNNNNNN ..................................... GGTGCGTGGCTTCCCACAGCCAGGCGCCCAGTCT 1232251 37 100.0 34 NNNNNNNNNN ..................................... CCTTCGGCTCGTAGCCGAACTTTTCCTTGAACTT 1232322 37 100.0 36 NNNNNNNNNN ..................................... GGCCTGTGGCCCGGAGCCGGAGCCAGTGAGTACCTC 1232395 37 100.0 35 NNNNNNNNNN ..................................... GACCTGAAGGGCCTCGTCTCGCTCGGCTACGGCAC 1232467 37 100.0 34 NNNNNNNNNN ..................................... TTGATCGTCTTGTGGCGCTCGATGATCGAGTGGT 1232538 37 100.0 35 NNNNNNNNNN ..................................... CTTCACGCCGTCTGCAATGGCCGAATCAGCCTGCA 1232610 37 100.0 34 NNNNNNNNNN ..................................... GATCGCCTTGATATTCGCAATCGACTGATCGAAT 1232681 37 100.0 36 NNNNNNNNNN ..................................... GGATTGCAGCTTGTCGGGCGAGCCTTCGGCCGAGCT 1232754 37 100.0 35 NNNNNNNNNN ..................................... ATGAGTCGCGCTATTCGCTATCTTCTGCAGACGTC 1232826 37 100.0 35 NNNNNNNNNN ..................................... GCCGCGTGATGCGCTACTCCACCGAGCAACTTCGT 1232898 37 100.0 35 NNNNNNNNNN ..................................... GGGCCTGCTCGACATGTACCGCGTGTACGCGCGCT 1232970 37 100.0 34 NNNNNNNNNN ..................................... GGCATGCAGATCACGATCACGATCGGCGGCGTCG 1233041 37 100.0 33 NNNNNNNNNN ..................................... CAGCGGCAGGCCTTCCTCGACCAGCTTGCTGGC 1233111 37 100.0 34 NNNNNNNNNN ..................................... CGCCTGGATGACGCAGGACGAGGTGCGAAGCATT 1233182 37 100.0 34 NNNNNNNNNN ..................................... GCCAGTCGAGGCGGCCGATGAGCAGGCAGCACAG 1233253 37 100.0 36 NNNNNNNNNN ..................................... GGACATGACGACCGACGAGCGCACGCACATTCGGAT 1233326 37 100.0 36 NNNNNNNNNN ..................................... GACACGACGAGCGATAGGCGTGACCATGCCCAAGAG 1233399 37 100.0 35 NNNNNNNNNN ..................................... TTCTTGGCGCCGGTCATGTCGATCTCCTTGGCGAT 1233471 37 100.0 35 NNNNNNNNNN ..................................... CTCAACGCCAGCAATGACAGTACCGACAACGGGAA 1233543 37 100.0 34 NNNNNNNNNN ..................................... CAGCACGAAGCCTCATACGGCCGCCCTCAGCCAA 1233614 37 100.0 34 NNNNNNNNNN ..................................... AAGCTCATCAGTGCCCAGTTGCTGCGCAAGCGAT 1233685 37 100.0 34 NNNNNNNNNN ..................................... TCCTGGTTTCCGGCGGTACCGAATGCGTGACGAT 1233756 37 100.0 34 NNNNNNNNNN ..................................... GCGATGGGCGGCGCGGGGTGTCCTGCGCCATTGC 1233827 37 100.0 37 NNNNNNNNNN ..................................... CCGCACCGGCGCCGGCCAGGTTGCCGTGGTTGGCGTG 1233901 37 100.0 34 NNNNNNNNNN ..................................... TGCCCAGCAAGCTCGGCATCAACCGGCTCGATAC 1233972 37 100.0 35 NNNNNNNNNN ..................................... GACAGCGAGCCGGTCACCCAGGCTACCTGCGCATC 1234044 37 100.0 34 NNNNNNNNNN ..................................... GTTCTTGCTTCGGTCGTCCAGATGGCAATAACTG 1234115 37 100.0 34 NNNNNNNNNN ..................................... CTTGTACTGCCAACCCGGATCGCCTCGGCTGCAT 1234186 37 100.0 35 NNNNNNNNNN ..................................... TTGCCCATCGCCACCGCCTCATCGATCACATGCGC 1234258 37 100.0 34 NNNNNNNNNN ..................................... CATGATGTGCGCGTGCCGCAGGACACTACAACTG 1234329 37 100.0 36 NNNNNNNNNN ..................................... GTTCTACAGCACCCGCCGCGTTGGCGGTGGTGCCGT 1234402 37 100.0 35 NNNNNNNNNN ..................................... ATGCGCAGCTGCAGGTATGCGGCATCCTTGGCACG 1234474 37 100.0 35 NNNNNNNNNN ..................................... CCAAGACCATTGCGAGCACATCCTCGCAATGGTCG 1234546 37 100.0 34 NNNNNNNNNN ..................................... CCCGCGATCTGGCGATCGAGCAGATCAACGAGAT 1234617 37 100.0 34 NNNNNNNNNN ..................................... CGGCTGTCAGGCCGGTCAGCACCGCGGGCAGCGT 1234688 37 100.0 35 NNNNNNNNNN ..................................... GCAGTGCTGTCGTGATAACCGAGACGGCAGCAGCA 1234760 37 100.0 36 NNNNNNNNNN ..................................... GTCCTCGGCTTCGGAGATCGGCTTGGTGATGTCGGT 1234833 37 100.0 34 NNNNNNNNNN ..................................... CCGGTGCTGGTGGCGCCCGTGCGCAACGCCGCCG 1234904 37 100.0 35 NNNNNNNNNN ..................................... AGCGTTTCACCGGCCGCCAGCGGGATCGTGATCGA 1234976 37 100.0 33 NNNNNNNNNN ..................................... ACTGCTCAGTTGGGCGGGTTGAAGATTGAAAGG 1235046 37 100.0 35 NNNNNNNNNN ..................................... CCATCCATCTCCACCAATATGCGGAGGTGCTTGTT 1235118 37 100.0 35 NNNNNNNNNN ..................................... GACGGGGGCGTCGAGAACGGCGGTGGTCATGACGG 1235190 37 100.0 34 NNNNNNNNNN ..................................... TGGCGTTGTGGGGGTAGATGCCGTAGGGCGTCAG 1235261 37 100.0 36 NNNNNNNNNN ..................................... CCACGAGTCATGATGTTTTGCGCCCGAGCGGAGACG 1235334 37 100.0 35 NNNNNNNNNN ..................................... TAGCCGACCATTCGTGATCTGCCGCGAAAACGTCG 1235406 37 100.0 35 NNNNNNNNNN ..................................... AGCAGGCCGCAGGGCTTGGCGCCGGCGGTGACGCG 1235478 37 100.0 35 NNNNNNNNNN ..................................... AAAGGGGCGCTTGCGCAGGGGATTACCATGACAGG 1235550 37 100.0 35 NNNNNNNNNN ..................................... TCGATCACCTGCTGCGCCACCTCGGGCTGCACGGT 1235622 37 100.0 34 NNNNNNNNNN ..................................... CGGGGCCGGTGAACGCGATGCGGCCGGTGCGCTT 1235693 37 100.0 34 NNNNNNNNNN ..................................... CGTGCATCACGCTGGCCGAGGCCAAGCTGCATCT 1235764 37 100.0 36 NNNNNNNNNN ..................................... CCAGCCGCCCTTCTGATCCGTGAAGTTGTTGCCGGT 1235837 37 100.0 35 NNNNNNNNNN ..................................... CTGGCGCGGTTCGAGCGCATCAACTCCAAGGGCGA 1235909 37 100.0 35 NNNNNNNNNN ..................................... TTGCCGTAGGCCAGCGTCCAGCTGTTGTGCACCAT 1235981 37 100.0 35 NNNNNNNNNN ..................................... GGCCGGTGGTGGTGGTCGAGGGCGAGAAGTGCGCC 1236053 37 100.0 34 NNNNNNNNNN ..................................... TTTCGGCGGCACGATCACGTATCGTGGTGGCCGC 1236124 37 100.0 35 NNNNNNNNNN ..................................... GGCCATGGGGGCTCCTATGTGGGGGTGAGGTCTTG 1236196 37 100.0 35 NNNNNNNNNN ..................................... GTGCTGGGCGGCATGCTGCCGAGGATCATTTCCGC 1236268 37 100.0 35 NNNNNNNNNN ..................................... GGGCTGTTCTTGCCGCTGCCGCTGTTGGTGATCAT 1236340 37 100.0 34 NNNNNNNNNN ..................................... CGGTGCGTGGGCAGGTGGCGTAATCTGGGCTGGC 1236411 37 100.0 35 NNNNNNNNNN ..................................... TCCTTGGGGTTGGTCTCTGTGGCCGCTGGCTGGCT 1236483 37 100.0 34 NNNNNNNNNN ..................................... CCCTGCGCCGCGTGCAGAGCACGCTCGACTTGTC 1236554 37 100.0 34 NNNNNNNNNN ..................................... CTTGCATGACCTGCCGCCCTTCACCAAGGGCGAG 1236625 37 100.0 34 NNNNNNNNNN ..................................... CCAGTCACAGTGGCGCCTGAGGCGGCCAGGCGCA 1236696 37 100.0 35 NNNNNNNNNN ..................................... ATCGCTACCCGCCTGGGGTGCCGCTGATGCAAACC 1236768 37 100.0 34 NNNNNNNNNN ..................................... GACGTTGGATCGCCGCTCAATCCAGCCGGCGGCA 1236839 37 100.0 1 NNNNNNNNNN ..................................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 69 37 34 GTTTCAATCCACGCCCGCCAGTTTCCCGGCGAGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [6,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.10,-11.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [658,190] Score: 0.18/0.18 # # Final direction: R [0.18,5.24 Confidence: HIGH] >NC_010525 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 1030559 24 100.0 40 GTAGTCGGGC ........................ GCTAGTCGTGTACGCCAGGGCGCGCAACTGCACCGTGGTG 1030623 24 100.0 41 CACCGTGGTG ........................ CGGCGATGGATATGTCTATGTCAACGGCGTTAGGAGGGCTA 1030688 24 100.0 39 AGGAGGGCTA ........................ ATCCGTACTACTGGCAGAAGAACGCGTATGCGTTTGAGA 1030751 24 100.0 37 GCGTTTGAGA ........................ ACAGGGGCTTCTCTGCGCCCAGCTCAAGGGGAGTCTT 1030812 24 100.0 41 GGGGAGTCTT ........................ GCGTCGATGTCTGTATATGCATATATTTGTGCTGTAATACA 1030877 24 100.0 43 CTGTAATACA ........................ GTATGGCCGCCCCGCCAGCACTGATCCTGCCGCCCCCAGGCTC 1030944 24 100.0 44 CCCCAGGCTC ........................ GGCTCATGAGGAGTGCGTAGAGCGTGCCAAGACGTGCTACATTA 1031012 24 100.0 44 TGCTACATTA ........................ GTGGATGGGGCCCTTAACAATTATTGCCCGATCTAGGTTGGTCA 1031080 24 100.0 45 AGGTTGGTCA ........................ TTACTGCAGAGGGCCAGCCAGGCCTACAGAACATACATCCGCCGT 1031149 24 100.0 46 CATCCGCCGT ........................ GGCCCTACTAATAGCCGGGGCCCTGGCGGCATCTGGCGCCGGGGCC 1031219 24 100.0 46 CGCCGGGGCC ........................ AGGGAGCTTGCGCAGTTGGTTGACAAGCTCGAGAATCTGAGACGTC 1031289 24 100.0 36 CTGAGACGTC ........................ AGATGGCGATAGTATAGTCGTGAAGCAGTTGCCAGA 1031349 24 100.0 46 AGTTGCCAGA ........................ CGGCATCTGCCACTGTATCAACCACCCCACTATCAAGTATACAGAC 1031419 24 100.0 40 GTATACAGAC ........................ TACTATCACGCTCCACGCGATTCGTGGTTCTGGTATCCGT 1031483 24 100.0 43 TGGTATCCGT ........................ AGCATGGTAGCGACAGCGCCAAGGTGGTGATGGAGACGTACGA 1031550 24 100.0 43 AGACGTACGA ........................ GCGTGGCTAACAGTAAGATTAGCGACTGGATTCACTTTTTTGC 1031617 24 100.0 43 ACTTTTTTGC ........................ TGAGGATGATCTGATTTGGGTTGGCGAGAAGTTCGGTCTGAAG 1031684 24 100.0 46 CGGTCTGAAG ........................ CGCACCGGCGTCGGCAACAAGTCGCTCCTGGTGAGGAGGGCCCTCG 1031754 24 100.0 44 AGGGCCCTCG ........................ GACGAACTACTACGGGCTTAGGGCCGCAGATGCGGTGGTACTGC 1031822 24 100.0 41 GTGGTACTGC ........................ GTTAGCGAGGAGGAGGTGGAGGACGAACTCTACGAGATTGT 1031887 24 100.0 39 ACGAGATTGT ........................ GGACGGGGCCGGCCGTGGCGTGGATACGGGTGTGGTCTG 1031950 24 100.0 45 GTGTGGTCTG ........................ GTCGTTAGTGTCTATGACCGCAGTGGTACCGCTGTGTTGCAAGTG 1032019 24 100.0 40 GTTGCAAGTG ........................ CGATGTCCACCAACACAATGTCGTCGTCATCAACCGCCAC 1032083 24 100.0 40 CAACCGCCAC ........................ ACATTTAAAGCCGTAGTTGCTGTAGGACAGGCGGGGGAGA 1032147 24 100.0 GCGGGGGAGA ........................ TGGGCCTTCTG ========== ====== ====== ====== ========== ======================== 25 24 42 CTTTCAATCCTCTCTTTGAGATTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.50%AT] # Reference repeat match suggestion: R [matched GAATCTCAAAAAGAGGATTGAAAG with 95% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [45.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [141,358] Score: 0.18/0.18 # # Final direction: R [0,5.45 Confidence: HIGH] >NC_010525 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 856966 24 95.8 48 CATGTATTGG ..........A............. CAAATACATGTAATACGTTGCAGTATTCTTATACAGCCTACTCTTTAC 857038 24 95.8 43 TACTCTTTAC ..........A............. AATTGCCCCACGACTTGGGGGAGAGAAACGGCGGCGTGGGGGT 857105 24 100.0 45 GCGTGGGGGT ........................ AGGAGAGCGGCGTCGACGACGTCCGCCCTTCCGGGGAACTTGGGA 857174 24 95.8 54 GAACTTGGGA ..........A............. ATAACATCCATAAGGTTTATTGGTCGTGCGAATGGCACCTCTTCATTGGGCAGA 857252 24 100.0 41 ATTGGGCAGA ........................ TCCACCACAGAGCCCGTAATTGTATACCACCGCGAATACCT 857317 24 100.0 43 GCGAATACCT ........................ ATCTGTATATGCGCCAACCTGTCAATAAGCGGGTCTGCGTTTT 857384 24 95.8 TCTGCGTTTT .......G................ TGCACCGGAA ========== ====== ====== ====== ========== ======================== 7 24 45 GAATCTCAAAGAGAGGATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.50%AT] # Reference repeat match suggestion: F [matched GAATCTCAAAAAGAGGATTGAAAG with 95% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [47,96] Score: 0.18/0.18 # # Final direction: F [5.68,0.18 Confidence: HIGH] >NC_010525 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 526440 25 100.0 44 AGTTAATAGA ......................... AAAGCGTCCAGCGCAATAAGGAATCTTCTGCTAGACATAATATT 526509 25 100.0 42 ACATAATATT ......................... GAGCGGGATCCTCATGTTAACGCCGAGTCGGGACGGCGAATA 526576 25 100.0 45 ACGGCGAATA ......................... GCCGCGAGTGCGGCACCGGGCCCACGCTAAGAACTTCGCAAGCGT 526646 25 100.0 43 TCGCAAGCGT ......................... ATAAGAAGTGCAACAAATGCGCTTTGAAGAGAGACTTTATTCC 526714 25 100.0 ACTTTATTCC ......................... GGCTTGTGTTT ========== ====== ====== ====== ========== ========================= 5 25 43 GTTTCTACTATCTTTTGATTTCTGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.00%AT] # Reference repeat match suggestion: R [matched GTGGAAATCAAAAGATAGTAGAAAC with 88% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [97,277] Score: 0.18/0.18 # # Final direction: R [0,0.68 Confidence: HIGH] >NC_010525 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 530828 25 100.0 41 AATACAAGCC ......................... CGGTTTTCTCACTACACGTCGGCCTTCGCCACTGTCGAGAG 530894 25 100.0 42 CTGTCGAGAG ......................... ACAGCCCAGGCCGCCCTCACGCCGCTGTGCTTCCGCGCCAGG 530961 25 100.0 47 CCGCGCCAGG ......................... ATGCCAGTGGGGAGGAGCTCCAGCACCAGGCCGTTGCGCACAGACGC 531033 25 100.0 42 GCACAGACGC ......................... ACAGTATCGGGAATCCCAGCGCCATCGATTGTCTTCACAATC 531100 25 100.0 40 CTTCACAATC ......................... TGGCTATCGCGTCCATAACCGCACGCCAGTCCTCGTCGCA 531165 25 100.0 42 CCTCGTCGCA ......................... AATACGTCCTCGGCCTTGCCGGTGTGCATAAGCCGCTCGGCA 531232 25 100.0 46 CCGCTCGGCA ......................... CGGTGGAGGTTACGCGCCACGCCGTCGTGGTAGTGATGCAGTAGAG 531303 25 100.0 39 TGCAGTAGAG ......................... AGAATATTTCTTCTCGACGTAGGCTCTCAGCACGGCGGT 531367 25 100.0 GCACGGCGGT ......................... AGTCTTGCACCGCCCAAGAATTCTCCGGTCTCAGCGGA ========== ====== ====== ====== ========== ========================= 9 25 42 CCAGAAATCAAAAGATAGTAGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.00%AT] # Reference repeat match suggestion: F [matched GTGGAAATCAAAAGATAGTAGAAAC with 88% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [318,134] Score: 0.18/0.18 # # Final direction: F [0.95,0 Confidence: HIGH] >NC_010525 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 849844 25 100.0 43 AATACAAGCC ......................... TGAACGGCGTGACTGTTGCTGTGTCGCCACTCCACTCAAACAT 849912 25 100.0 42 ACTCAAACAT ......................... AAAGTCGAGACGCAAGGTGGGGGGTTGGTATGAGGTGCTACG 849979 25 100.0 40 AGGTGCTACG ......................... TGGACGGTCTCACTACATGGATTTACTGAGCGCCAGACGT 850044 25 100.0 40 CGCCAGACGT ......................... GTGATAAATGTGTTTAACGCATCTGTTTCACATTCCGCAT 850109 25 100.0 41 CATTCCGCAT ......................... GAATATACTTGATCTGTGTCCTTGTGATCTTCTCGTCGAAG 850175 25 96.0 46 CTCGTCGAAG T........................ GCTCCGCACTGTATACACACGACGCCGTCGGCGACGGTCACGAGCG 850246 25 100.0 43 GTCACGAGCG ......................... CATCTGCATGACCATATACCTCATCAGCCCCTGCATCATGGTT 850314 25 100.0 44 CATCATGGTT ......................... GTTACGTGGTGGTATGGCAGGAGTGTTAAGATTATGGTGGCGCC 850383 25 100.0 45 TGGTGGCGCC ......................... ATGCTCGGCATACAATCGCTGGCCCCCTCCCCGCCCTAAAGGGCG 850453 25 96.0 44 CTAAAGGGCG .T....................... ATGAACAAGGAAGTCGATGTCGAGGTGGTGCCTGAGGAACCCAG 850522 25 100.0 43 AGGAACCCAG ......................... CCTAGAACACCAAAAGGCGCAGGCCATGAGCCCCAACACTATG 850590 25 100.0 40 CAACACTATG ......................... AGCTTCTTCCTACGCTCCTCTGCGCTACCCTCAGAAGTCA 850655 25 100.0 44 TCAGAAGTCA ......................... GCGTAGTTTATGTGGATGAGACATATACGTCAGCTACATGTCCA 850724 25 100.0 42 TACATGTCCA ......................... TCTACATCTGTCCAGAACCTGTATGCCTCGTTGGCAACATAT 850791 25 100.0 45 GGCAACATAT ......................... CCACCTCCAGTTGCCACCTCAACCACGGCACTGCCTATCTTCCGC 850861 25 100.0 46 TATCTTCCGC ......................... ACGGTACCAGACGCAGATATGCCGCTCTGAGATGGCGATATGTTGC 850932 25 100.0 36 GATATGTTGC ......................... GAAGCCGGCGTCGGGGGCCGCGTCGCCCGGCCCGCG 850993 25 100.0 44 CCGGCCCGCG ......................... AGCCAACTGGCCCTTGACACGGCCCCCGGGCCGGGGGTTGACAA 851062 25 100.0 43 GGGTTGACAA ......................... TTCGAAGTTGCATCCGCTCGACCCCTCCCTCTCCTTCCGCCCT 851130 25 100.0 40 CTTCCGCCCT ......................... CCTCTACAGAGACATCACATGTCAATAAACCCGCGCCTGC 851195 25 100.0 42 CCGCGCCTGC ......................... GCCCCCGCTGTAGCTGAAACATACTTTGACGCGTTGCTTTCC 851262 25 100.0 35 GTTGCTTTCC ......................... ATTATGTCTGAAACTGGTCTTGCCGTTGGCGTGCT 851322 25 100.0 42 TTGGCGTGCT ......................... CAGGAGAGAAGCCGCAGATGGCATAACAAATTCGCCATAATC 851389 25 100.0 46 CGCCATAATC ......................... GAACGAGAAAGGCGCCGCGGGGGCGGCGTGGTTGGACGAGCTAGTC 851460 25 100.0 43 CGAGCTAGTC ......................... ATATGGAGTATCCAGAAATGAAGCCGCAAGCCATTTCAGTTCT 851528 25 100.0 45 TTTCAGTTCT ......................... CCACTTGCCATATCGTTGTAGCCGAGCCGCACCGCGTACGGAGAC 851598 25 100.0 45 GTACGGAGAC ......................... GCTAGTCGGCGTGCCGGTGGCGATTATGACCCTCGCCATGCCGCC 851668 25 100.0 42 CCATGCCGCC ......................... CGCTGTCTCTACCTCTCTCGTGCGCATGGTCATCGGCAACGT 851735 25 100.0 TCGGCAACGT ......................... CCGTATTGC ========== ====== ====== ====== ========== ========================= 29 25 42 CCAGAAATCAAAAGATAGTAGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.00%AT] # Reference repeat match suggestion: F [matched GTGGAAATCAAAAGATAGTAGAAAC with 88% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [277,129] Score: 0.18/0.18 # # Final direction: F [0.95,0.41 Confidence: MEDIUM] >NC_010525 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 994025 25 100.0 40 AATACAAGCC ......................... GCAACGACGAGCGGGCGCTGTCGACATTCGCACTGAGACA 994090 25 100.0 42 CACTGAGACA ......................... CTAAAAAACGCACAACCTTCTCGATTCTCTCTTGTCCGCTCA 994157 25 100.0 44 TGTCCGCTCA ......................... CAGATGAGATACGCAGACTGTTTCTGCCTGCAGCAACTACCAGG 994226 25 100.0 46 AACTACCAGG ......................... TGAGTAGCTCTTGAAGCGTCACCCAACGCGGTAGCTGGGATATGCG 994297 25 100.0 39 GGGATATGCG ......................... GACATATGGAAGATCCGCTGGCCCGAGGCGATAAAGTCG 994361 25 100.0 44 GATAAAGTCG ......................... CCGGCCCCTGAGGGGCCTCTAACTTCGTAAACTCTATTTTTTGA 994430 25 100.0 42 TATTTTTTGA ......................... AAGGTGCGCGGTGAGGACGTACTGCCTCTGGATTCGGAGGTG 994497 25 100.0 46 TTCGGAGGTG ......................... CTTGTTGGAGTTGCTCTGGGCTTTGCCGTCGGCGCGTTCTGGCTCA 994568 25 68.0 48 TTCTGGCTCA .................-------- TGTAGAAACGAGATACGCGATGGCGTAGAGACTGCGACGTTGTCTCGC 994641 25 100.0 42 GTTGTCTCGC ......................... ACGCTTCTTGCAAGACGCGTATAGTCGCGTCGCGGTTGTTGA 994708 25 100.0 45 CGGTTGTTGA ......................... ACACCGCTTGGGCTCGAGGCTGAGGAGCTCCTTGAGCCGGCCAGG 994778 25 100.0 43 GCCGGCCAGG ......................... AGAGACTCGTAGAACAGTAGCCAAGAGTACGCCTTAGACCAAA 994846 25 100.0 43 TTAGACCAAA ......................... TCCCTGGTGTCTGCTAAGACGTCCATTACGGCGCCGCCTTAAC 994914 25 100.0 45 CCGCCTTAAC ......................... CCACATGGACTATACATGGATGTGGGGCCTGAAGGAGAGGGAGTA 994984 25 100.0 43 AGAGGGAGTA ......................... GGTCTCGCGATCCTGCCCAACACCGCCATGGCGACCATGGCGT 995052 25 96.0 ACCATGGCGT .............A........... AACTACACGA ========== ====== ====== ====== ========== ========================= 16 25 43 CCAGAAATCAAAAGATAGTAGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.00%AT] # Reference repeat match suggestion: F [matched GTGGAAATCAAAAGATAGTAGAAAC with 88% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [276,434] Score: 0/0.18 # # Final direction: F [0.91,0 Confidence: HIGH] >NC_010525 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 1017598 24 100.0 40 AGAAACCCCA ........................ GGAGATGGCGATACTGCGGGCGTTCTGGGGGGCATGCTGA 1017662 24 100.0 43 GGCATGCTGA ........................ CAGCGCCTCCACGGTGTACGAGCTGGGCAGAGTGAGGGTGGTG 1017729 24 100.0 40 GAGGGTGGTG ........................ CAACTCCTAAACCACCCCGTTTTTTCTCTCCTTAAGACGT 1017793 24 100.0 44 CTTAAGACGT ........................ CGTCAACTTGATCCATTGTACACTCACGCCCGAAACAGACATTG 1017861 24 100.0 41 ACAGACATTG ........................ CTTTGGCGCGACAGAGTGGGTTCTGGCGTGACAGTTCCTTG 1017926 24 100.0 44 CAGTTCCTTG ........................ ATATTCCGGGCCCAGGGCATCTACGGTGCCCGGTGGGTAGGCTA 1017994 24 100.0 44 GGGTAGGCTA ........................ GTTTCGAGTGCCATTCACTGTACGGCTCGAGCTCATATATTTTC 1018062 24 100.0 44 ATATATTTTC ........................ GTTTCGAGTGCCATTCACTGTACGGCTCGAGCTCATATATTTTC 1018130 24 100.0 45 ATATATTTTC ........................ TGAACTCGCCTACCTTGACGTAGCAGGTGTTCCACACCACCAGGT 1018199 24 100.0 38 ACCACCAGGT ........................ GGTCATCCCCGTCCACGACGCGTAACCTCCCCATTTTT 1018261 24 100.0 41 CCCCATTTTT ........................ TCGATAGCTTTCTCAGCCGTAGCGGTGTCCATCATGGCGAC 1018326 24 100.0 42 TCATGGCGAC ........................ GGCGGCGGTCTCTGCAACTGTTGCTGTGGCTTAGGCGGAGGT 1018392 24 100.0 42 AGGCGGAGGT ........................ TGTCTAGATAGCGCTGTATCATCATGGCCTTGGGATAGTAGA 1018458 24 100.0 44 GGATAGTAGA ........................ CAGCGAGTGTGGCGGCAGGCAGACGCCCAACAGCTCCTCACTCT 1018526 24 100.0 41 TCCTCACTCT ........................ ACTCTCTACTCCTACGTACACATCATCGCCTACACGTCTCA 1018591 24 100.0 41 ACACGTCTCA ........................ TCACTTGACGTCCCTACCGCCATACTCACTTCACGGTTGTA 1018656 24 100.0 41 CACGGTTGTA ........................ CTACTGCCTCGTAGACGTGGAGGAGGGAAGGGCCGTGTGCG 1018721 24 100.0 44 GCCGTGTGCG ........................ AATGGGTTGCGACAGCCACCGAAGCTACCGTGCCACATCGACTC 1018789 24 100.0 45 ACATCGACTC ........................ TATGCAATCTGCTCAGCCAAACTAACGTCGTCCAGCCTCGTAATG 1018858 24 100.0 43 CCTCGTAATG ........................ CGGCCGGCGACGGCGACGGTGAGGTCGCAGGCGCAGTTGCGGG 1018925 24 100.0 43 CAGTTGCGGG ........................ GCGGTGACAGGCGAGTAGTTGTATGCGACGTCTAGGGCATCAT 1018992 24 100.0 37 AGGGCATCAT ........................ AGCTGTTGTTGCTGTAGCTGTCTCATTACCTCCTCGC 1019053 24 95.8 42 ACCTCCTCGC .........A.............. CACAGCTGTGTACTCGGCGAGCGCCATGTCGACGAGCTACTG 1019119 24 100.0 CGAGCTACTG ........................ ATAGGGCAGG ========== ====== ====== ====== ========== ======================== 24 24 42 GAATCTCAAGTTGAGGATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.50%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [61.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [297,93] Score: 0.18/0.18 # # Final direction: F [5.36,0 Confidence: HIGH] >NC_010525 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 1036387 24 100.0 45 GGTCGCACCT ........................ CGGAAAGTTCTGTCGCACTGTCTGTTGGAAGTAGTCCAACCCACC 1036456 24 100.0 42 CCAACCCACC ........................ TCGATTCCATCCGTTATGAGCGCTATGACGGCGTTGCGACGC 1036522 24 100.0 42 GTTGCGACGC ........................ CTGTACAGATATCTCGAGTAAGGAATGGGTGTTAGTTCGACT 1036588 24 100.0 44 TAGTTCGACT ........................ CAACGAAGGCGACCAGGTCACCGTTGTGGTGCGCAACGTGAAGT 1036656 24 100.0 44 AACGTGAAGT ........................ GTCTTCTCTTGGATCTGCTTGGCGAGCGCGTCCACAGCTGCGCG 1036724 24 100.0 39 CAGCTGCGCG ........................ TCGTGAAGAAGAAGAGCGCAGGAGACGTGAGGAAGAGGA 1036787 24 100.0 45 AGGAAGAGGA ........................ ATAAACCAAGTGGCGGCGTTCTGCGTAACCGGCGTCCAGTTGATC 1036856 24 100.0 43 CCAGTTGATC ........................ CAACAGGTCACGTCCTTCCTTGCCGGCCTCACTGACCCCTTCG 1036923 24 100.0 42 GACCCCTTCG ........................ CGAGGACAGCTCTAACGCTACTCGCTGATTCAGAGTAATTAA 1036989 24 100.0 41 GAGTAATTAA ........................ ATTAAGTTCGCGTATCTGCTGAATGAGTACAGGCGCAGACT 1037054 24 100.0 41 GGCGCAGACT ........................ TGTATCTGGTACGGCCACCTGGTGTAGTCCACGCCGCAGAG 1037119 24 100.0 47 CGCCGCAGAG ........................ CGAGTAGATCTCCAGCGTCGTGGATGTCTTCGCGTGGCCGAGCCAGT 1037190 24 100.0 41 CCGAGCCAGT ........................ TCTCTATCCTTTTGTCGAAGTCTTCGTTGCGATAGTACTGG 1037255 24 100.0 44 ATAGTACTGG ........................ GCTGTACGACGCCGGCGCAGAACTCCAGGGTGTGGACGATGGCG 1037323 24 100.0 45 GACGATGGCG ........................ CAGTACCGTGTCGTATAGTGGATGCAGAGCTTGACGGCCCTTACT 1037392 24 100.0 44 GGCCCTTACT ........................ CGGGGGCATCCCGTCCCCCGAGAACGAGTATCTGATTAGGAGCC 1037460 24 100.0 42 ATTAGGAGCC ........................ GGGTGCCCAACGGACGTAGTCCCTAGTCTCTGTGTAACTTCC 1037526 24 100.0 43 TGTAACTTCC ........................ TTTCGATCCCTGCATCATGACAAATGCGTCCCGCAATTCATCA 1037593 24 100.0 41 CAATTCATCA ........................ GAGATCCAGCAAATCATCTGCATATTCTCGCGTAGAGCGCT 1037658 24 100.0 45 GTAGAGCGCT ........................ CTCCATCGGGATTGGCCTCCCACCTATAAAATCTAGAGGAGAACT 1037727 24 100.0 40 GAGGAGAACT ........................ CTCTTATCAACGCTTTTTCAAGTATACTATTGTGCTCTGT 1037791 24 100.0 52 TGTGCTCTGT ........................ CACACTTCAGCGCCAGCTTCAGCCCCTTATACACCACGACGTCGTGGGGGCG 1037867 24 100.0 42 CGTGGGGGCG ........................ CGGCACTTCCATGTTCATGTACGACCTTCTCCACGCCTCTCT 1037933 24 100.0 44 ACGCCTCTCT ........................ TGCGACACAATTCCGCGCTTCTTCGGCGCCGCCGCCGAGGAGCC 1038001 24 100.0 41 CCGAGGAGCC ........................ ACGTTAAAATACAATACATCGCCGCCTCTCACGGCGACGAT 1038066 24 100.0 41 CGGCGACGAT ........................ TATGAGCAGGACTGGTGGAGGAGGGCGTTGGCGAACTCCGT 1038131 24 100.0 44 CGAACTCCGT ........................ CACCCGGCGTGAACTTCAGCGTCGTGCCAACGCCGACCGGATGT 1038199 24 100.0 42 GACCGGATGT ........................ GTCATTCGACACCGCCGCATTCAAGATGGCAGTTGACAGGAG 1038265 24 100.0 42 TTGACAGGAG ........................ TTTACCATACCGCTTATGTGGTGCATAGAAGTTCTAAGCGAT 1038331 24 100.0 41 TCTAAGCGAT ........................ GAGTGACGGAATGCACTGCGGCCGGCGGCACATGTGTTGCT 1038396 24 100.0 ATGTGTTGCT ........................ TTGACCTTA ========== ====== ====== ====== ========== ======================== 31 24 42 GAATCTCAAGTTGAGGATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.50%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [748,250] Score: 0.18/0.18 # # Final direction: F [4.68,0.27 Confidence: HIGH] >NC_010525 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 856227 24 100.0 48 AGAAGACCCA ........................ CGATCAGCTTGACGATCGTGGAGTGTATTACCGACTTCTGCTCCTCGG 856299 24 100.0 45 TGCTCCTCGG ........................ CGTAGTGGTAATCTCTAATCTCTCTAATGATGTCCTCATTCTCCA 856368 24 100.0 42 TCATTCTCCA ........................ CTTCATGACCGCATTAAATATATCGGGGTCTTGCATTGCTAC 856434 24 100.0 41 GCATTGCTAC ........................ CCTCGAGGAAGGCGTGGGGATCCCTGGCCAGCAGCTCAGCC 856499 24 100.0 42 CAGCTCAGCC ........................ TTTAACCGCAGAAACTTGTCGATAACTGAAAAAACGGGGTTG 856565 24 100.0 45 AACGGGGTTG ........................ TTGTACTCTTATAGAAACGTATTGTGGCCACCTTACGGCGGAGTG 856634 24 100.0 44 CGGCGGAGTG ........................ CAGTCTCCGCGGATGCTTGTGCATCGTTCGGCGCCGACAACTCA 856702 24 100.0 41 CGACAACTCA ........................ ATCTTCACAGCGTAGTACACCTGCGTGTGGCTGAGGGAGAG 856767 24 100.0 38 TGAGGGAGAG ........................ CGTCTAGGACGAGGGGCACTATCATTATGCGCCTGTCC 856829 24 100.0 43 GCGCCTGTCC ........................ CTCAGCTTGTAGACGTTCTCCATGTATTCATCGATATAGTACA 856896 24 100.0 ATATAGTACA ........................ CTCCACCA ========== ====== ====== ====== ========== ======================== 11 24 42 GAATCTCAAGTTGAGGATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.50%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [297,48] Score: 0.18/0.18 # # Final direction: F [4.68,0 Confidence: HIGH] >NC_010525 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 883097 24 100.0 42 NNNNNNNNNN .......................T GCCCTTGGCCAGGTGGACGGCCCAACCCAAGACGAGTAGTGG 883163 24 100.0 45 NNNNNNNNNN .......................T GACGGCGGGGTCAACCGCCCGGGGATGTAGATTAGACGTGGCGAT 883232 24 100.0 42 NNNNNNNNNN ........................ CGAAACGGGGCGGCACTCGGCCGAGGACATACTCCGCGGAGT 883298 24 100.0 44 NNNNNNNNNN ........................ CCTCACAATTTCGGCCGCCTCTATACTTACACGCACACTTAACT 883366 24 100.0 45 NNNNNNNNNN ........................ GTATTGGGTTATATATGGGCCGTCAAGTTTGGTGCTGTATTTGGT 883435 24 100.0 39 NNNNNNNNNN ........................ ACGCCGGCCTGCCCGGGACGTATGCAATAGACTACTGGC 883498 24 100.0 45 NNNNNNNNNN ........................ CTTGGACGCGCAGAGGATCTACAGAAAGCTCCTCGAGTATGTCGA 883567 24 100.0 47 NNNNNNNNNN ........................ ATCATTCCCGTACACAAGGTCGGACAGCTTCAGTTGCTGCCCACCGC 883638 24 100.0 39 NNNNNNNNNN ........................ CTGTTTTCACAGCTGTGATTTCCGGCGTCCGAAGGGGGG 883701 24 100.0 46 NNNNNNNNNN ........................ TTGTAGTATATCGTGCCGGCCGACAGGCTGATTTGGGGCAGGGCCA 883771 24 100.0 44 NNNNNNNNNN ........................ ATTAGGGCATCGCCAACATACTTGAACACCTCGCGGTATTTAGT 883839 24 100.0 44 NNNNNNNNNN ........................ GTAGAATACTACGTCGGTCGCGGGAGCTGTCGCTACGTTGATGG 883907 24 100.0 42 NNNNNNNNNN ........................ TGTAGTCGGTGTAGGAGCCGCATGCGGTGCCCTGTATGACAT 883973 24 100.0 45 NNNNNNNNNN ........................ TTTATTGTCTCCAGCCACGCGGCGTCTCTGTCACGCGTATTGACG 884042 24 100.0 47 NNNNNNNNNN ........................ TCTATCGTTATGCCGTTTGCGTTATTGTAGTACAACAGAACGCCGGG 884113 24 100.0 42 NNNNNNNNNN ........................ CGCCACACGACGCTTCAAGAGCTACTGAGAGCGCTCTACGCC 884179 24 100.0 39 NNNNNNNNNN ........................ ATCCTCTGGCCAGGGATAAGCAGAAAAAGGGGGATTACA 884242 24 100.0 41 NNNNNNNNNN ........................ CTTCGCGATCAGCTCCGCTATCGCCATTCTTATGATCTCTC 884307 24 100.0 44 NNNNNNNNNN ........................ AAACACGAAGAAAAAATACGAGGTCAACGAAAACGGTGAAATAG 884375 24 100.0 38 NNNNNNNNNN ........................ CGTCGCCCAGCTTGAACTTTCTGTTGCAGACGTCCAAC 884437 24 100.0 45 NNNNNNNNNN ........................ CTAACACTGACAGTGCCTGTCGACAGATCGCGCCTGATTGCGACA 884506 24 100.0 43 NNNNNNNNNN ........................ GTTTAGACTGTAGAATTCCTTTCCGCATAGCTGGCATTGCATG 884573 24 100.0 35 NNNNNNNNNN ........................ GCCAGTGAAGGTAATCTATTTGACATCAGATGGAC 884632 24 100.0 42 NNNNNNNNNN ........................ TCGGACATTGTGGCAATGTGGGTTCGTGGTATCATAAGCGAA 884698 24 100.0 46 NNNNNNNNNN ........................ CGACAAGGTCGCGTTGGCGGTATCACTATTTAAACCCACGCAACAG 884768 24 100.0 42 NNNNNNNNNN ........................ TTATATTGCGCCAGTTACTATTGGCGACAACTCTCCTCAACA 884834 24 100.0 45 NNNNNNNNNN ........................ CTATCTTGGGTTTTACACGTGCGCCCGCGTTTGGATCCAATATGT 884903 24 100.0 39 NNNNNNNNNN ........................ TCTTGGTACACGGCGGTGGCAGGCAGTACTACGCCTTCA 884966 24 100.0 42 NNNNNNNNNN ........................ ATGATGGTCTCGCTCTTGGTGTACAGCCATATGACCAAGCCG 885032 24 100.0 41 NNNNNNNNNN ........................ GTGGCGAGCTCTCTGAGAAGTAGAACGCGGAGGTGGGTCAC 885097 24 100.0 42 NNNNNNNNNN ........................ ACGTCGACGTATGCAAGCAGGTTGTAACCGCCTAACGAATCA 885163 24 100.0 45 NNNNNNNNNN ........................ CTAAACTTAAACGTGCTTGAGATCGTTGAGGTATGAGCTCGTGGA 885232 24 100.0 40 NNNNNNNNNN ........................ TAGTAGACGTGTGTCGCAATTAGGCTCTGCGTCGCGTTTA 885296 24 100.0 45 NNNNNNNNNN ........................ AGGAGGGATACAGACAGCTCATCCGGTACGTCGCAGAGAGGGAGG 885365 24 100.0 43 NNNNNNNNNN ........................ GCCATACTCCGTGGCCTGCATAGCCGTGAGGAGGGAGCTGGCG 885432 24 100.0 44 NNNNNNNNNN ........................ CATGATTGAGCGCAGCGAGAAGCTGTCCGACACCGCCGCCGCCA 885500 24 100.0 45 NNNNNNNNNN ........................ CGCCTTGCTGAGGTCGTACCAGTGCATAAGGCGCTCTGCGAGGCC 885569 24 100.0 44 NNNNNNNNNN ........................ GTCGTCTACCCGCCGCCCGACAAATACATCGCCGTGATCGGCAC 885637 24 100.0 46 NNNNNNNNNN ........................ TTCTACGACTTTGCGGACAAGCAGACGGTGTATGAATACATGGAGA 885707 24 100.0 1 NNNNNNNNNN .......................A NNNNNNNNNN ========== ====== ====== ====== ========== ======================== 40 24 42 GATTCTCAGATAGAGATTTGAAGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.50%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [61.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2791,115] Score: 0.18/0.18 # # Final direction: F [0.86,0 Confidence: HIGH] >NC_010531 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================== ====== 206180 26 100.0 19 NNNNNNNNNN .....T.....A..A........... TCCTGCTGCTAAAAAAGTA 206225 26 100.0 19 NNNNNNNNNN .......................... TCCTGCTGCTAAAAAAGTA 206270 26 100.0 31 NNNNNNNNNN .......................... TCCTGCTGCTAAGAAGCCTGCTGCTAAAAAA 206327 26 100.0 1 NNNNNNNNNN .......................... NNNNNNNNNN ========== ====== ====== ====== ========== ========================== 4 26 23 GCTGCAAAAAAGGTTGCTAAAAAGCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:57.69%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [373,235] Score: 0/0.18 # # Final direction: R [0,0.41 Confidence: MEDIUM] >NC_010545 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2288189 28 100.0 33 NNNNNNNNNN ............................ TCGGGGCTGTGGCTGCTGTCGGTAACGCAGGCG 2288250 28 100.0 33 NNNNNNNNNN ...............A............ GAGGTGCTTAGTCAGTTCCTCGGCGTACCCCTC 2288311 28 100.0 33 NNNNNNNNNN ...............A............ GGCCCACGTGGTCTCGGTGCTCTGGTAGGTGGC 2288372 28 100.0 33 NNNNNNNNNN ...............A............ CTACCCCCGTTGCTACCCCCGTTGGTGGGGTTG 2288433 28 100.0 33 NNNNNNNNNN ...............A............ AGCCGAACCCGAACCGGGCGGACCAGTCCAGAA 2288494 28 100.0 33 NNNNNNNNNN ............................ TGCTGCGCACCGAGGGTGTTTTGCCGGAGTGTG 2288555 28 100.0 33 NNNNNNNNNN ............................ TCGTTTGAGCCGATCGGGCAGGTGATTGATCTG 2288616 28 100.0 33 NNNNNNNNNN ............................ TTGGGAAGCCTGCGCCGGGGTCTGTGTGGTCGG 2288677 28 100.0 33 NNNNNNNNNN ............................ AAGCCCATGCGTCTCACCGGGGCCCACTGTAGG 2288738 28 100.0 33 NNNNNNNNNN ............................ AGTCGACTACTGTGCCCGGCGCGTAGCGCGTTG 2288799 28 100.0 33 NNNNNNNNNN ............................ AGACCATCACCGCTTTCCCGCCGACTTCGGAGG 2288860 28 100.0 33 NNNNNNNNNN ............................ GGAATCACCTACCACGAGGAAACAACCCTCGGC 2288921 28 100.0 33 NNNNNNNNNN ............................ TCACCCGGGCGCAGCATCGGGGTGAACGTGATG 2288982 28 100.0 33 NNNNNNNNNN ............................ CACATGGGCCGTCCCGACCTCACCCCCGACCTG 2289043 28 100.0 33 NNNNNNNNNN ............................ TCTACTGCGATTCAGTGGGCGTGGGAGAACGTG 2289104 28 100.0 33 NNNNNNNNNN ............................ ATAGCCTTAGCAGTGGCTTTATCCGACGTGTCG 2289165 28 100.0 33 NNNNNNNNNN ............................ ACATCCCTCGATGTGTTCACAAGCCGCGCCTCA 2289226 28 100.0 33 NNNNNNNNNN ............................ GACACCACAATCGCGGTGCCGTGCTTGTGAGTG 2289287 28 100.0 33 NNNNNNNNNN ............................ AGGCGACGGATCACGAAACCGGCTTTACCGTGC 2289348 28 100.0 33 NNNNNNNNNN ............................ CAACCCTTAGAGAATCTATCGACGTTGCCCCTG 2289409 28 100.0 33 NNNNNNNNNN ............................ GCGGGGTAGTAAACGCGCCCGGTGCGCCCCTCC 2289470 28 100.0 33 NNNNNNNNNN ............................ TCACGGGTGAGGATTGCCAGGGCGTTGCCGGCA 2289531 28 100.0 33 NNNNNNNNNN ............................ TTCTTCAGCACCACGTAGATCGTCGTCGCGGTG 2289592 28 100.0 33 NNNNNNNNNN ............................ TCTTCCTCGACCTGTTCGGGTGTCCAGTCCGGG 2289653 28 100.0 33 NNNNNNNNNN ............................ TGCTGGTTCCTGCTATGGAGTTCGCGTCTGGCG 2289714 28 100.0 33 NNNNNNNNNN ............................ TTCGTGTAATCCTGCAGCCTCCACCGCATGGTG 2289775 28 100.0 33 NNNNNNNNNN ............................ AACCGCAACGGAAAACAGCAACTCGCAGCCCCC 2289836 28 100.0 33 NNNNNNNNNN ............................ GGGTTCTCGGCGGCCATGTTGCCGATGTACAGC 2289897 28 100.0 33 NNNNNNNNNN ............................ GTCGTTGTAGGTGCAGTCGCCGTGGATCACGGC 2289958 28 100.0 33 NNNNNNNNNN ............................ TTCCCGGTGGACCAGGTGCGCCAGTCGTCTGTG 2290019 28 100.0 33 NNNNNNNNNN ............................ ATCAACGCCCGCCAGTTCTTCCAGACGCTCAGA 2290080 28 100.0 33 NNNNNNNNNN ............................ ATATGCGGATCATCAGACCACCCACACAACGTG 2290141 28 100.0 33 NNNNNNNNNN ............................ TCCACCGGCTTCGTAACCTCTGCCCCTGTGCTG 2290202 28 100.0 33 NNNNNNNNNN ............................ TTGATCGTGCCCGCGACGATCACCGGGGCCCCC 2290263 28 100.0 33 NNNNNNNNNN ............................ AGAATCGCCGTAGCGATCACACCAATAGTGGCC 2290324 28 100.0 33 NNNNNNNNNN ............................ TCATCAGCGTTACCGGCGACCATGCTCCACGCC 2290385 28 100.0 33 NNNNNNNNNN ............................ GCGGTTATGGCTGGCGGTGGGCTGCTGAAGTGG 2290446 28 100.0 33 NNNNNNNNNN .......T.................... TGCCTAGTTATCGGACGGCTCCGTCCATGAGAC 2290507 28 100.0 33 NNNNNNNNNN ............................ TTCTGGACTCCTTGGTCACGGGGGTGGGTTTCC 2290568 28 100.0 33 NNNNNNNNNN ............................ CTGGTGGCTGCCGCGGTCGCCGCGTGGGCGGGG 2290629 28 100.0 33 NNNNNNNNNN ............................ GTGCCCTTTCTGGCGTTTGTGGCTGGGACTGTG 2290690 28 100.0 33 NNNNNNNNNN ............................ TGTGACGGAGTTTCCGTTGTTCGCGTAGCGCAG 2290751 28 100.0 33 NNNNNNNNNN ............................ GTGAAGGAGGGTGCCGAATGACCGATGTCATGA 2290812 28 100.0 33 NNNNNNNNNN ............................ GGGCTGTCGATCGCCCGCCTGGGCTTGGTGGTG 2290873 28 100.0 33 NNNNNNNNNN ............................ TGGTGGCGGTAGCCCGCCCCCGGTAGGTGGCGG 2290934 28 100.0 33 NNNNNNNNNN ............................ CTAGGGGAAATGGATATTCTCCATTCCGCGCAC 2290995 28 100.0 33 NNNNNNNNNN ............................ ATGATCGCCTGCGACAGAATCTCCCACGCGGCC 2291056 28 100.0 33 NNNNNNNNNN ............................ GGCAGGGCTGGCACTTGGCGCGTCGCGCCCGGG 2291117 28 100.0 33 NNNNNNNNNN ............................ CCTACCTTTTCTCCACCATTCAGTGGGGGCTCC 2291178 28 100.0 33 NNNNNNNNNN ............................ TGCTCGGACGCGGCGACCTGACGCTCCAGGCTC 2291239 28 100.0 33 NNNNNNNNNN ............................ ACAAGCTCAAACGACAGGCCACGCGCCGTTTTC 2291300 28 100.0 33 NNNNNNNNNN ............................ CGTGAGTTAACGCCTTTTGAGTCCTCGGCGGTG 2291361 28 100.0 33 NNNNNNNNNN ............................ AGTCGAATTTCTTCTCGCAGTCGGAGCAGACAG 2291422 28 100.0 33 NNNNNNNNNN ............................ CTCAAATCAAGCCCAGAATGGCGTGGTAAAGGG 2291483 28 100.0 33 NNNNNNNNNN ............................ GCACTCGAGGTTTCATCGAATCCCTTCTTTGCC 2291544 28 100.0 33 NNNNNNNNNN ............................ ACGCCCCCGCCCCGGCGGATAACGTGATTCTGA 2291605 28 100.0 33 NNNNNNNNNN ............................ ATTAGGCCCGCCTTCATTTCCGGTAACGCCGCC 2291666 28 100.0 33 NNNNNNNNNN ............................ AGTACACCGAGGACTTCAACGAGTTTTGGAGCC 2291727 28 100.0 33 NNNNNNNNNN ............................ GTGTCGTCTGTGGTGGTGCCTGAGCCTGGCTAC 2291788 28 100.0 33 NNNNNNNNNN ............................ GAGGAGTTTGAGCGCATTAGGGACGGCCGTGAG 2291849 28 100.0 33 NNNNNNNNNN ............................ GACTCCTCCAGCTGCTTCATCACACCCTCGGCC 2291910 28 100.0 33 NNNNNNNNNN ............................ CTGTGGATCAGCTCCAGCAGCTCCTTGCCGTAG 2291971 28 100.0 34 NNNNNNNNNN ............................ TTCCCCCAAGTCGCCCTTCGGCGCCTCAGGGAGC 2292033 28 100.0 33 NNNNNNNNNN ............................ TTAAGGGCATGAGTAAGGAGTTCGCTAAGAACC 2292094 28 100.0 33 NNNNNNNNNN ............................ CCTGTTCGAGAAGCTTTAGTCTTCTCACTCGAC 2292155 28 100.0 33 NNNNNNNNNN ............................ TGGCGCCTAGCCCCGTATGTTACATTTCGCAAC 2292216 28 100.0 33 NNNNNNNNNN ............................ CAACAGTTCAACCATGAGGGGTCTACACACCCG 2292277 28 100.0 33 NNNNNNNNNN ............................ TTGCTGGCCGCTTTTGTTCCGTATTTTGGGATG 2292338 28 100.0 33 NNNNNNNNNN ............................ ATTTTCATGATGGAGTCCTTGAAGGACTTCGCC 2292399 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 70 28 33 GGCTCATCCCCGCTGGCGCGGGGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [3,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [38.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [336,77] Score: 0.18/0.18 # # Final direction: R [0.18,0.64 Confidence: MEDIUM] >NC_010546 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 809864 36 100.0 40 CCAATTTTAA .................................... TCCCATTGGTTGTGGCAAAGAATTCTCTGAGTTAACCCTA 809940 36 100.0 42 GTTAACCCTA .................................... CTATTATACCTGTAGTTGTTGTCATGAAGTTTTCCCCGATGA 810018 36 100.0 42 TCCCCGATGA .................................... AAATATCGATCGCCTTAAGGCAACGAGTTGGTTCATCAGAAT 810096 36 100.0 43 TCATCAGAAT .................................... TTACCTACATATACAGCGTAATGAGATAATGTTCCCAGTGGAG 810175 36 100.0 42 CCCAGTGGAG .................................... TCGAGAGGCCCATTTATTTGCACTAGGATCAAAGATTCTAGA 810253 36 100.0 38 AGATTCTAGA .................................... TCTCCTTGTCCCCTTATGCTCATGATCGCCTTTCCTTG 810327 36 100.0 43 CCTTTCCTTG .................................... TAGAACAATTGAGATAGAAGTCCCCAATTTAGGAAAACGCATA 810406 36 100.0 36 AAAACGCATA .................................... AGATCTTTATACCTCGAATGATTAGTTTTCGATTAT 810478 36 100.0 40 TTTCGATTAT .................................... CAATCTATTAAGATTGCCTTTTTTAACTTTTTGTTTCAAT 810554 36 100.0 39 TTGTTTCAAT .................................... TTCATTAACGATGAAGAACAAAAGGAAAAATCCTTTGAT 810629 36 100.0 ATCCTTTGAT .................................... GGTACTCGCTA ========== ====== ====== ====== ========== ==================================== 11 36 40 GTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:69.44%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.30,-0.40] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [75.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [184,223] Score: 0/0.18 # # Final direction: F [0.27,0 Confidence: MEDIUM] >NC_010546 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 359673 37 100.0 33 TTTATACGAC ..................................... CATCACAGCAAATAGCACACGGAATGTATAATG 359743 37 97.3 35 ATGTATAATG .C................................... TTTTTTGTTTTGTTAGTAGCAATACTGACTGACAA 359815 37 100.0 TGACTGACAA ..................................... AGTCCGTCTGA ========== ====== ====== ====== ========== ===================================== 3 37 34 AAGTTTCCATTCAACTAGGTTCTCCGTTAAGAGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.16%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.60,-1.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [60.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [365,249] Score: 0/0.18 # # Final direction: F [0.68,0.37 Confidence: LOW] >NC_010556 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 173195 32 100.0 33 NNNNNNNNNN ................................ TTTTTGGCATAGACGCCATCTAGCGTGAGTTTA 173260 32 100.0 34 NNNNNNNNNN ................................ TATTCGGCGTTGCATAAAGGCGCGATGGAGACGA 173326 32 100.0 33 NNNNNNNNNN ................................ TCCGTTGCTTTTTCCACCCTTTGAGGTGTCATA 173391 32 100.0 33 NNNNNNNNNN ................................ ACCGACGCATCTTCTATGATGTCCGAGGAAATC 173456 32 100.0 34 NNNNNNNNNN ................................ TGCATACCAATGACCGCCGTCAATTTCGATATTT 173522 32 100.0 36 NNNNNNNNNN ................................ AAGAATCGCAAGAAGACGCGCAAGGAAAAAGTACAC 173590 32 100.0 33 NNNNNNNNNN ................................ ACATATATGATGTGTTTGATACAACCGGCGTGA 173655 32 100.0 35 NNNNNNNNNN ................................ ACGTTTGAAGGATTTAAAATCACACGTACAGTAGA 173722 32 100.0 34 NNNNNNNNNN ................................ TTCTGTAAATAAGGGTAATCCATCTTGACTAAAA 173788 32 100.0 35 NNNNNNNNNN ................................ ATTGTCTGCCAAGCAACGGATCAACTGCCATTGCA 173855 32 100.0 34 NNNNNNNNNN ................................ AACTGGGAAACATCTCAAAAGAACGGGCGCAAAA 173921 32 100.0 34 NNNNNNNNNN ................................ CCAACGCTCCTGCTGCAACTCACCCGTGATACCG 173987 32 100.0 33 NNNNNNNNNN ................................ TTCCATCAACCGCAGGCGACGTTCTGGATCAAG 174052 32 100.0 33 NNNNNNNNNN ................................ GCGCACGACGGGACAAAAGGAAATGTCATGGTC 174117 32 100.0 33 NNNNNNNNNN ................................ CGCTTCAAACGGTTGCCGTGTATCGCGTGTGAT 174182 32 100.0 1 NNNNNNNNNN ...........TA................... NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 16 32 33 GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [6,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.40,-3.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [71.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [182,206] Score: 0/0.18 # # Final direction: F [5.55,0.37 Confidence: HIGH] >NC_010572 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 4137471 29 100.0 32 NNNNNNNNNN ............................. CCGTTGGCTGACCAGCACGGTTCGCGCGCGAT 4137532 29 100.0 32 NNNNNNNNNN ............................. ATCAGCGGCCCTGGAGGGTCTTGGCCACGCGG 4137593 29 100.0 32 NNNNNNNNNN ............................. ATTGCTACAACCCCCCAGAGTTGAACATGCGC 4137654 29 100.0 32 NNNNNNNNNN ............................. AGATCGGGACCGTTGGCCGTGGGCACGTTCTC 4137715 29 100.0 32 NNNNNNNNNN ............................. GTCGCCGAAGCAGTTCGCATCATTCGACCGGA 4137776 29 100.0 32 NNNNNNNNNN ............................. CGCCAGCGACAAGTTGATGTCCCGCTCTGCAA 4137837 29 100.0 32 NNNNNNNNNN ............................. CTTACGTCACTTGCATGCCGCGCGGGAGGATT 4137898 29 100.0 32 NNNNNNNNNN ............................. CAGAGGCACGGTGATGGCAGCGTGGGTGGAGG 4137959 29 100.0 32 NNNNNNNNNN ............................. TGCACTCCGTCCGCGACGCCCACGGCCGGGTC 4138020 29 100.0 32 NNNNNNNNNN ............................. GACTGCGGCTCCGTGACCATCGGCACGACGAC 4138081 29 100.0 32 NNNNNNNNNN ............................. GATGTCGGCGACGGCATCCGGTCCGTGGCGTC 4138142 29 100.0 32 NNNNNNNNNN ............................. CACTGCGACGCCAGCTCACTCGATGACCCGAT 4138203 29 100.0 32 NNNNNNNNNN ............................. GGACCGCCGTCGGTGATCACGGCCGCCACCAG 4138264 29 100.0 32 NNNNNNNNNN ............................. GCGGCAGCTACCAGTTCCGTGGCGTCGACTCT 4138325 29 100.0 32 NNNNNNNNNN ............................. CGGCAGGGCCCCAGGAATTCGACAATCGCCAG 4138386 29 100.0 32 NNNNNNNNNN ........................C.... GGAGCCGCGAGACGGCCGGCCGCACCCACCGC 4138447 29 100.0 32 NNNNNNNNNN ............................. GAGCACGACCGTTCTGCGCTGTCGTGAGTCTC 4138508 29 100.0 1 NNNNNNNNNN ..................TTCCGTGC.G. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 18 29 32 GTGGTCCCCGCGCGTGCGGGGGTGTTCCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.40] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [56.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [684,323] Score: 0.18/0.18 # # Final direction: F [0.86,0.37 Confidence: MEDIUM] >NC_010582 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1724442 29 100.0 49 NNNNNNNNNN ..T.C.A.A...........G........ TGATGCGGATTCAGATGCTGATGTGCTTGCAGATACTGAAGCCGAAGCA 1724520 29 100.0 43 NNNNNNNNNN ..C.....C.....A.....A........ TGAGGCTGATGCTGAGGCGCTAGTACTTGCTGAGGCTGAAGCA 1724592 29 100.0 19 NNNNNNNNNN ..T...........A...........C.. TGAGGCTGAGGCTGAAGCA 1724640 29 100.0 43 NNNNNNNNNN ..T........G..T...........G.. TGATGCCGATTCAGAGGCACTGGTTGATGCGGATTCAGACGCA 1724712 29 100.0 43 NNNNNNNNNN ..T..GCT.........C..G.....G.. TGATGCGGATTCAGAGGCACTGGTACTTGCTGACTCTGATGCA 1724784 29 100.0 19 NNNNNNNNNN ..T..ACT............G..G..G.. TGACGCTGAAGCCGACGCA 1724832 29 100.0 43 NNNNNNNNNN ..C........G..A...........G.. GCTTGCTGAAGCCGAGGCACTGGTTGATGCGGATTCAGAGGCA 1724904 29 100.0 19 NNNNNNNNNN ........C......A....A........ TGATGCTGAGGCCGAGGCG 1724952 29 100.0 19 NNNNNNNNNN ........C.....A.....T.....C.. TGATGCTGACTCAGACGCA 1725000 29 100.0 43 NNNNNNNNNN ........C.....TT.A..T..TGAG.. GCTTGCTGAAGCTGACGCACTGGTTGACGCTGAGACTGAAGCA 1725072 29 100.0 25 NNNNNNNNNN ..C.....G..C..TT.A.....TGAG.. GCTTGCTGAAGCTGATGCACTGGTA 1725126 29 100.0 37 NNNNNNNNNN ..T.C...G..C.....ACT..TTGA..C TGAAGCTGACGCACTGGTTGACGCTGAAACTGAAGCA 1725192 29 100.0 19 NNNNNNNNNN ..C.....G..C..TT.A.....TGAG.. GCTTGCTGAAGCTGATGCA 1725240 29 100.0 19 NNNNNNNNNN ..C.....G..C..TT.A..A..TGAG.. ACTTGCTGAAGCTGAAGCA 1725288 29 100.0 19 NNNNNNNNNN ..C...........TT.A..T..TGAG.. GCTTGCTGAGACTGACGCA 1725336 29 100.0 19 NNNNNNNNNN ..C........C..TT.A.....TGAG.. GCTTGCTGAGGCTGACGCA 1725384 29 100.0 19 NNNNNNNNNN ..T........C..TT.A..G........ CGACGCTGAAGCCGAAGCA 1725432 29 100.0 19 NNNNNNNNNN ............................. ACTTGCTGAAGCTGAGGCA 1725480 29 100.0 43 NNNNNNNNNN ..T..C..............G.....C.. TGACGCTGAAGCTGAGGCGCTGGTACTTGCTGAAGCTGACGCA 1725552 29 100.0 19 NNNNNNNNNN ........C.....A..C........C.. TGATGCTGAGGCCGAGGCG 1725600 29 100.0 19 NNNNNNNNNN ........C.....A.....G.....C.. TGATGCTGACTCAGACGCA 1725648 29 100.0 19 NNNNNNNNNN ........C.....TT.A..T..TGAG.. GCTTGCTGAGGCTGACGCA 1725696 29 100.0 19 NNNNNNNNNN ..T........C..TT.A..G........ CGACGCTGAAGCCGAAGCA 1725744 29 100.0 49 NNNNNNNNNN ............................. ACTTGCTGAAGCTGACGTACTTGCACTTGTTGATGCGGATTCAGAAGCT 1725822 29 100.0 1 NNNNNNNNNN GAT..GCT.........C........G.. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 25 29 28 CTGGTTGATGCTGAGGCTGACGCACTTGT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [37-50] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [55.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [276,12821] Score: 0.18/0.18 # # Final direction: R [0.68,0.92 Confidence: LOW] >NC_010572 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 4141681 29 100.0 32 NNNNNNNNNN ............................. GTCACCGCCGTCGACATGAGCGACGACCTGAC 4141742 29 100.0 32 NNNNNNNNNN ............................. CACCGGTTGGACCGACAGCGCCGGCCGCGCCT 4141803 29 100.0 36 NNNNNNNNNN ............................. ACCGGGCAGGACGTCCTGACCCGGGTGCGCGCCGAC 4141868 29 100.0 32 NNNNNNNNNN ............................. ATCGCCGAGGCCGACACCTACGGGCCCGCCAC 4141929 29 100.0 32 NNNNNNNNNN ............................G TGCTTGAGCAGCCCGAGCAACGTTGTCGCCGA 4141990 29 100.0 32 NNNNNNNNNN ...........C................. TCGGGCGGGCGGAGCGGGCGCGCAGCACCCGG 4142051 29 100.0 32 NNNNNNNNNN ............................. CGCGACCTGAACCGCATCCTCGGATGGCCCGA 4142112 29 100.0 32 NNNNNNNNNN ............................. TCTCGCCCCGCCCCGCCGGGCCCCGACCGCAT 4142173 29 100.0 32 NNNNNNNNNN ............................. GGGCGGGGACTGCGTATGGCGGGCCCCCTCCA 4142234 29 100.0 30 NNNNNNNNNN ............................. GGCGCGCAGTCCCATGGCCGCGCCCCTCTA 4142293 29 100.0 32 NNNNNNNNNN ............................. GCGACACCGCCCCTGACCACTGGAACAACACC 4142354 29 100.0 32 NNNNNNNNNN ..............C.............. CCGCCGCCGGTGAGCCAGCCGAGGGGGATCTC 4142415 29 100.0 32 NNNNNNNNNN ............................. CGCCGACCGACTGCTCAAGGCCCTGCGCGACG 4142476 29 100.0 32 NNNNNNNNNN ............................. TCGGCGTGACCGGACCTCAGATGATGGGGGCC 4142537 29 100.0 32 NNNNNNNNNN ............................. TGACGCTGACGCAACGAGCCCAGCAGCGCCCA 4142598 29 100.0 32 NNNNNNNNNN ............................. AACACCCTGTTGTAAGAGGTTGATGTGAGCGA 4142659 29 100.0 32 NNNNNNNNNN ............................. GACGACGAGAGGTCGTGGTCGTAGGCGAGCAT 4142720 29 100.0 1 NNNNNNNNNN .....................C.T.C..A NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 18 29 32 GTGGTCCCCGCGCGTGCGGGGGTGTTCCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.40] Score: 0/0.37 # Array degeneracy analysis suggestion: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [232,136] Score: 0/0.18 # # Final direction: F [0.68,0.37 Confidence: LOW] >NC_010610 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 1393562 35 100.0 34 CGACTGAAGC ................................... TACCCTCAATTTGGGCGTTTTGACCTGTCGCATC 1393631 35 100.0 33 CTGTCGCATC ................................... CAAGCCAAGGCTTGACGAACTTCCAAGCAAATA 1393699 35 100.0 CAAGCAAATA ................................... CGCAACATAT ========== ====== ====== ====== ========== =================================== 3 35 33 ATTTCAATCCACGCACCCCCGCGAAGGAGTGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [9,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.70,-6.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [38.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [106,160] Score: 0/0.18 # # Final direction: R [0.37,5.14 Confidence: HIGH] >NC_010572 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 4152730 29 100.0 32 NNNNNNNNNN ............................. ACTACGCCCGCAGCCCGTACCCGATCAAGCCG 4152791 29 100.0 32 NNNNNNNNNN ............................. CACGCACACACGGAGGCCCGCCATGGGTGACA 4152852 29 100.0 32 NNNNNNNNNN ............................T CCTCGCCGGAATCCTCCTCGGCCTCTCCCAAG 4152913 29 100.0 32 NNNNNNNNNN ............................. ACCCCCTGACCCCCGGGCTGCCCTGTCGCCCC 4152974 29 100.0 32 NNNNNNNNNN ............................T TCGGCGGGGGTGTTGATCGGGGGCCCGTGCAT 4153035 29 100.0 32 NNNNNNNNNN ............................. ATGCCCCAAGCGCCTATGTGCCGGGTCTACGA 4153096 29 100.0 32 NNNNNNNNNN ............................T CCGCGGCGCTCGTACGGCATCCACTCGGCCCG 4153157 29 100.0 32 NNNNNNNNNN ............................. TCGGCCTGTGTCAGGCGCCCATGTTTCTGCCA 4153218 29 100.0 32 NNNNNNNNNN ............................. GTCCACTCGGGCTCGACGCCTTGTTCGTCGAG 4153279 29 100.0 32 NNNNNNNNNN ............................. CGGCCGGACACGTACTGCCAGATCTCCGGGGA 4153340 29 100.0 32 NNNNNNNNNN ............................G ATCATCGGCTGGACTACAGCCGCTTGGGACTG 4153401 29 100.0 32 NNNNNNNNNN ............................. TGGACGCTCAGCAGGGGGGACATCGGCGTGAG 4153462 29 100.0 31 NNNNNNNNNN ............................. AGGCCCTTGTGGGCCTCTTGTTTCGTGATCC 4153522 29 100.0 32 NNNNNNNNNN ............................. CTGCGGCAGATCGCGGGCTCGTGGACCGTCCC 4153583 29 100.0 32 NNNNNNNNNN ............................. TGGCTGATGCCTGCGTTACGCGGCCGGAGCAG 4153644 29 100.0 32 NNNNNNNNNN ............................. TGGCTGATGCCTGCGTTACGCGGCCGGAGCAG 4153705 29 100.0 32 NNNNNNNNNN ............................. TGGCTGATGCCTGCGTTACGCGGCCGGAGCAG 4153766 29 100.0 32 NNNNNNNNNN ............................. TTCTCCGGCGCCGACCAGGCCCGCACCGTCAT 4153827 29 100.0 30 NNNNNNNNNN ............................. GGGGGCAGCCTGTTCCCGTACGCCGACGCG 4153886 29 100.0 33 NNNNNNNNNN TC.TG.T..C..............A.... CCGAGGACGGACGCGCGGGACTTGGTGCGGCCG 4153948 29 100.0 32 NNNNNNNNNN .............A.......G....... AGGTCCCGGCCGCAGTAGTCCTCGACGAGCCC 4154009 29 100.0 1 NNNNNNNNNN ...........................TG NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 22 29 31 GTGGTCCCCGCGCGTGCGGGGTTGTTCCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-12.40,-13.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [3-11] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [53.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [124,580] Score: 0.18/0.18 # # Final direction: R [0.68,0.92 Confidence: LOW] >NC_010610 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 816914 28 100.0 33 TCTGTTTACG ............................ TTAAAGGAGAATACTATGATCAACAAAAAAATT 816975 28 100.0 33 CAAAAAAATT ............................ TTTTTGCAGGGTTCGCTAGTGATGGCAAAGGTG 817036 28 100.0 33 GGCAAAGGTG ............................ TATCAGCTTGTGCTGCACTTGCCGATGATTTAG 817097 28 100.0 33 GATGATTTAG ............................ TGATATGATCTACGATCAGGGAACCTATGCTTC 817158 28 100.0 33 CCTATGCTTC ............................ CATCTTGCCTACGATTGACACCTCAACCGGTGA 817219 28 100.0 33 CAACCGGTGA ............................ TAGGGACACAAGATAACCTTGCCGAGATAATGA 817280 28 100.0 33 GAGATAATGA ............................ TCGTGTTTCAAGATCCGTCCCGAGCTTGTTTTG 817341 28 100.0 33 GCTTGTTTTG ............................ TTTAATAGCAATAGTCTACCGTATTAGGAGAAG 817402 28 100.0 33 TTAGGAGAAG ............................ TACACAATAAGCGTTAATACTAAAAATAACGGT 817463 28 100.0 33 AAATAACGGT ............................ TCCCGGTTTCTGTATCTACTCCAACTTCATCGA 817524 28 100.0 33 ACTTCATCGA ............................ TTTGTTATATGAGTAACCGCACTTAGCATTAGC 817585 28 100.0 33 TAGCATTAGC ............................ TTAAATACTTAAACTACAAGGTCGATGAAAAAG 817646 28 100.0 33 GATGAAAAAG ............................ CCAGATAAGATGACGATCATCACGACCAACAAC 817707 28 100.0 33 GACCAACAAC ............................ TAGGTGGCAATAGGCCATCCCCAGGGGTCTCCC 817768 28 100.0 33 GGGGTCTCCC ............................ TTATAGTCGGCCACTGAATGGACTTCCGCATCA 817829 28 100.0 34 TTCCGCATCA ............................ TATTGGGAGAAGCTGTTTGGCCCACTTGATCCAA 817891 28 100.0 33 CTTGATCCAA ............................ TTTCCAGTCGTGGAATCGATGCTGACCGTCGGT 817952 28 100.0 33 GACCGTCGGT ............................ CCAACAAAGCGGCAATCAACAGCAAGGACCAGC 818013 28 100.0 33 AAGGACCAGC ............................ TATGCAAGAGTGGCTTTATCAAGTCGCCAATGC 818074 28 100.0 33 TCGCCAATGC ............................ TTATTTGTAAACCATCACTGCGTTTACCGCTGT 818135 28 100.0 TTACCGCTGT ............................ CCAGATTCCG ========== ====== ====== ====== ========== ============================ 21 28 33 GTATTCCCCATGTATGTGGGGGTGATCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-9.10,-7.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [286,55] Score: 0.18/0.18 # # Final direction: F [0.55,0.37 Confidence: LOW] >NC_010610 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 819535 29 100.0 32 NNNNNNNNNN ............................. ACAACCAACTGCAAACGGCAACCCAACAGATC 819596 29 100.0 32 NNNNNNNNNN ............................. ACAAAGATGAACTTGTGAAAATGTCTTTCTTG 819657 29 100.0 32 NNNNNNNNNN ............................. CAAGGAAATACATCCCAAGTTTATCTAACTGG 819718 29 100.0 32 NNNNNNNNNN ............................C CCGGTGAAAAGCAAGGCGAACGCTTCTTCCTC 819779 29 100.0 32 NNNNNNNNNN ............................. ACTGGTGATAACTCTGGTCGCCTGATGGTTTT 819840 29 100.0 32 NNNNNNNNNN ............................. AGCTAATGATTTCTTTGGTAGCGTCAGCCAGG 819901 29 100.0 33 NNNNNNNNNN ............................C GGATGTGCATCACGATCATGAAAAACGACCACA 819963 29 100.0 32 NNNNNNNNNN ............................. AGTAAATGGTATCAGGGGGCCGGCGAGTTACA 820024 29 100.0 32 NNNNNNNNNN ............................. TGCTGACAAGGTATTTAAGGACGCCGAGAAAC 820085 29 100.0 32 NNNNNNNNNN ............................. TGTCGGTTGTTCTGCTGATTGCGTTGCTGTGG 820146 29 100.0 32 NNNNNNNNNN ............................. TAAGCCGTTTAGCCATTGCAGCGTTGCTCATA 820207 29 100.0 32 NNNNNNNNNN ............................. CAGTGCCCACCCGGTGGACGTTAGCTCTATCC 820268 29 100.0 32 NNNNNNNNNN ............................. ACCGGCGGGCGAAGTTGGTCAACCTCGTCATT 820329 29 100.0 32 NNNNNNNNNN ............................. GGTATCACCTGAATATGGCGCATCCCATCGTT 820390 29 100.0 32 NNNNNNNNNN ............................. ATGATCCAGGCGAGGCGATTGCTAACGGTAAG 820451 29 100.0 32 NNNNNNNNNN ..........................GTC GACGTTCATACCGAGGCCATTGTCAGTCCAAG 820512 29 100.0 32 NNNNNNNNNN ............................. ACATGGCATACGCTTGAAATTGACTACGATAA 820573 29 100.0 32 NNNNNNNNNN ............................C ATGATATCCATGGTTAGCAGTAGTAATTATGA 820634 29 100.0 32 NNNNNNNNNN ............................. CTTGCTAGACGCTTTCTTCCACTTTGAAAGGG 820695 29 100.0 32 NNNNNNNNNN ............................. ATATCAACGTTTTAAGTTGGTTAGTGTCCCAA 820756 29 100.0 32 NNNNNNNNNN ............................. TGGAAGAGCTGGACGTTGTCAAATGACGGGAA 820817 29 100.0 32 NNNNNNNNNN ............................. TAAGTATTCTTAAAGGAGGTCACACATTACTG 820878 29 100.0 32 NNNNNNNNNN ............................. ACTTATCCATACCAACTTGACTAATTAAATCA 820939 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 24 29 32 GTATTCCCCATGTATGTGGGGGTGATCCT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-9.10,-7.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [100,69] Score: 0/0.18 # # Final direction: F [0.78,0.37 Confidence: MEDIUM] >NC_010612 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================== ====== 4189118 22 100.0 56 NNNNNNNNNN ...C.A......T.GA.....A TTTGGTCCGCTGGTCGGCGGCTGGGGCGGCAACGGTGGCGATGGCGGCGCCGACGG 4189196 22 100.0 35 NNNNNNNNNN ...................... ACCGGCGGGCACTCGAGTGGCTCCGGCGGCATTCT 4189253 22 100.0 26 NNNNNNNNNN ...CA...C............. AACGGTGGCAACGGCGGTACCGGCGG 4189301 22 100.0 38 NNNNNNNNNN ...................... GATGGCGGCTCGCTCACCATCAACGACAACGCCAACGC 4189361 22 100.0 23 NNNNNNNNNN ...CA.T...........T... AACGGCGGCACCGGGGCCATCGG 4189406 22 100.0 50 NNNNNNNNNN .A.CAT................ GCCGGCGGCGCTGGTGGGACCGGCGGTCTGTATGGCAACGGCGGGACGGG 4189478 22 100.0 23 NNNNNNNNNN ...CAG........G....... AGCGGCGGCACCGGGGCCACCGG 4189523 22 100.0 44 NNNNNNNNNN ...CAT.......GC....... AACGGCGGCGACTCTTTCGACAATCCCAATGCGCCCGGCAATGG 4189589 22 100.0 23 NNNNNNNNNN ...CA.........C....... ACCGGCGGCACCGGCGGCACCGG 4189634 22 100.0 50 NNNNNNNNNN ...CAA........C...T..G GCCGCGGGCGCGGGCGGCACCTATGGCCAGTCGGGCATGGTCGGTGCAGG 4189706 22 100.0 23 NNNNNNNNNN G..T.A..C....TC...T... GACGGCGGTGGCGGCGGCGCCGG 4189751 22 100.0 1 NNNNNNNNNN T..C.A.......G....T... NNNNNNNNNN ========== ====== ====== ====== ========== ====================== 12 22 35 CGGGGCCGGCGGCAACGGCGGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [2,] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [9-26] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [25.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2861,269] Score: 0.18/0.18 # # Final direction: F [0.96,0.27 Confidence: MEDIUM] >NC_010612 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================== ====== 2452032 34 100.0 38 NNNNNNNNNN ..T..AG....C..A.....T..A..G..C.... TACCGCCGTCTTTACCGCCGATTCCGGCGCCGCCTTCG 2452104 34 100.0 20 NNNNNNNNNN .....AG.......A........A.AGG.....C TGTCACCAGCGCCACCATTG 2452158 34 100.0 47 NNNNNNNNNN ......G..............G..C.G...G..C TACCCCCGGTGCCGCCGGTCCCGGCGGTACCCCCGATTCCGCCAGTG 2452239 34 100.0 29 NNNNNNNNNN .....TG.C......T........A.GG...... TACTGCCGTTGCGGCCGTCGCCGCCGTCG 2452302 34 100.0 29 NNNNNNNNNN ..A...G........T.T......TGG....... TGCCGTTGGTGCCGCCGGGGCCGCTGTTG 2452365 34 100.0 29 NNNNNNNNNN ......G........T..........G....... CAAAGCCGCTGTCACCCACGGCGCCCTTG 2452428 34 100.0 20 NNNNNNNNNN T......C.......T..........G....... TTCCGCCGGTGCCGGCGTTG 2452482 34 100.0 20 NNNNNNNNNN ...TT.G........T..........G...G.C. CGCCGCCGGATCCGGCGTTG 2452536 34 100.0 32 NNNNNNNNNN ......C...........G.......G....... CTTTGCCTTGACCGACTCCGGAGGCGCCGTCG 2452602 34 100.0 29 NNNNNNNNNN .......C...A............T........T GGCCGCCGGTGCCGTTGGTGCCGCCGGGG 2452665 34 100.0 47 NNNNNNNNNN ....T....................CA....... TACCGCCGGCAAAGCCGCTGTCACCCACGGCGCCCTTGTCGCCGTCG 2452746 34 100.0 65 NNNNNNNNNN .................................. TGCCGGCGCTGCCGTTGGTGCCGCCGCCACTAGCATCGCCGCCGGTGCCGGCCGCGCCGCCGGAT 2452845 34 100.0 68 NNNNNNNNNN ...G...........T..........GG...... TGCCGCCGGCTTTGCCTTGACCGACTCCGGAGGCGCCGTCGCCGCCGTCGCCACCGGTGCCGCCGTTT 2452947 34 100.0 83 NNNNNNNNNN .......G.............TT...G....... GGCCGCTGTTGCCGCCGGTGCCGCCGGCACCGCCGGTACCGCCGGCAAAGCCGCTGTCACCCACGGCGCCCTTGTCGCCGGCA 2453064 34 100.0 65 NNNNNNNNNN .................................. TGCCGGCGCTGCCGTTGGTGCCGCCGGTTCCGCCGGTGCCGGCCGCGCCGCCGGATCCGGCGTTG 2453163 34 100.0 59 NNNNNNNNNN .................AG.......G....... CTTTGCCTAGGCCGACTCCGGAGGCGCCGTCGCCGCCGTCGCCACCGGTGCCGCCGTTT 2453256 34 100.0 65 NNNNNNNNNN .......G.............TT...G....... GGCCGCTGTTGCCGCCCTTGCCGCCGGCACCGCCGGGTCCGCCATCGCTGCCATCGCCGCCGGTT 2453355 34 100.0 47 NNNNNNNNNN ................CA......T.G....... TGCCGGCGTTGCCGGTGCTGTCGCCGGTGCCGCTCAGGCCTCCCGCG 2453436 34 100.0 1 NNNNNNNNNN ..AG.......A....CC.....TTCG......T NNNNNNNNNN ========== ====== ====== ====== ========== ================================== 19 34 44 CCGCCGTTGCCGCCGGTGCCGCCGGTTCCGCCGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.30,-7.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [40-29] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [23.3-25.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [972,3043] Score: 0.18/0.18 # # Final direction: R [0.37,0.96 Confidence: MEDIUM] >NC_010612 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 6290480 19 100.0 110 NNNNNNNNNN ................... GGCCGGCGGCAGCTCAACGGGTGGCGCCGGCGGCACCGGCGGCGCGGGTGGCGCCGGCGGATGGCTATTCGGCCCGGGCGGGGTCGGTGGGGCCGGCGGCAGCTCCAGCA 6290609 19 100.0 86 NNNNNNNNNN .......C........A.. TGTTGGCGGGGCCGGCGGGCTCTTCGGCGGCGGCGGGCTCGGCGGGGCCGGCGGCGCCGGTGTCAGTGCGAGCGGTGGGGCCGGTG 6290714 19 100.0 74 NNNNNNNNNN ................... GGCGTTGGCCGGGTTTCTCGGCGCCGGCGGCGGCGACGGTGGGGCCGGCGGGTCCGGCGTCAATCACGAGGGCG 6290807 19 100.0 62 NNNNNNNNNN .......C.....T..... GGCGGGCGGACTGATCGCCGGTACTGGCGGCAACGGTGGGGCCGGCGGCACCGACGCATACA 6290888 19 100.0 29 NNNNNNNNNN ..CGA..C..G........ GGCCGGCGGCGACGCCGGGCTGCTGTTCG 6290936 19 100.0 41 NNNNNNNNNN ..AG...C..G........ GACCGGCGGAACAGGCGGCACCGACATGTCTGACAGTGGGG 6290996 19 100.0 20 NNNNNNNNNN ..A....C..G........ CAATGCCGGGCTGCTGTTCG 6291035 19 100.0 38 NNNNNNNNNN ..AG...C..G........ GGCGGGCGGCGCGGCCGTCGCCCTCAACGACGTCGGAG 6291092 19 100.0 26 NNNNNNNNNN .T.....A..A........ CAACGCCGGGCTGTTCGGCAACGGTG 6291137 19 100.0 50 NNNNNNNNNN .G.T...C..A.T...T.. CGTCGGCGCCGGCGACGGCGGGGCCGGGGGCCGGGCCGGCCTGGTGATCG 6291206 19 100.0 32 NNNNNNNNNN ..AA...C........T.. CGCCGGTGGCGAGAGCTTCGGTTTCGGTGCGG 6291257 19 100.0 35 NNNNNNNNNN ...T............... CAACGGCGGCAACGGCGTGCTGATCGGCAACGGCG 6291311 19 100.0 26 NNNNNNNNNN ..AA..CC...A....... CACCGGCCTGAGTACCGGCAGCACGG 6291356 19 100.0 1 NNNNNNNNNN .......C..GAT.A.... NNNNNNNNNN ========== ====== ====== ====== ========== =================== 14 19 48 GCGCCGGTGGCGCCGGCGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [,1] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [9-24] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [11.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [603,1213] Score: 0.18/0.18 # # Final direction: R [0.41,0.82 Confidence: MEDIUM] >NC_010612 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================== ====== 962722 21 100.0 75 NNNNNNNNNN ......CG........GA..T GCCTCTATTGCCTACTGGCGCCTTACTGGAGCCGCCGCTGCCGCCCGCAACCTGTTGGCCGTTCAAGGTGCTGGC 962818 21 100.0 90 NNNNNNNNNN ......CT........G.... TCCGCTGCGGCCGACGCCACCGCCAGTGTCACCGCCGTCGCCGCCCTTACCGCCGTCGCCGCCGTATCCGCCGTATCCGGCGTTGCCAAG 962929 21 100.0 81 NNNNNNNNNN .......G............. CCCCATACCGCCACCACCGCCGAAGCCGGTGCTGGAACCGCCGTCTCCGCCGCGACCAGCATTGCCTCCCGTGGCGCCGAT 963031 21 100.0 84 NNNNNNNNNN A......T.A........... CCCGCTGCCGGCAACGCTTTCGAGATCGGTGGCGCCCCCGCCTTTGCCGCCGTTACCCCCAACGCCACCAGTGGAGGTGCCGTT 963136 21 100.0 90 NNNNNNNNNN A.......C.......G.... GCCGGCGCCGCCAGTGGCTCGGAAACCGTCAGCTGCGCCGCCGGCGCCGCCGCGGCCCCCGGTGCCTCCGGTGGTACCAGAGCCGCCAGC 963247 21 100.0 81 NNNNNNNNNN .......TC.......C.... GCCGGTGGCTTGGAAACCGCCACCTGCGCCGCCGGTGCCCCCGTCACCCCCAGCGCCGGCGATCACACCGTTGCCGCCCTT 963349 21 100.0 66 NNNNNNNNNN .......T.........C... GCCGTGGACGGCGCCGTTCGCGCCGCCGTTGCCGCCGCGACCGCCAGTGCCACCGGTGTTGCCGTT 963436 21 100.0 39 NNNNNNNNNN .......T.A........... GCCGTCGCCGCCGTTGGGGTTGACAGTGTTAAGGGTCCC 963496 21 100.0 33 NNNNNNNNNN .A.....T............. CCCGGCGCCGCCATCACCTCTGATCGCGCCGTC 963550 21 100.0 45 NNNNNNNNNN ...C...T............. GCCGTCGCCGCCGTCGCGGTTCGTGAAGAGGCCGTTAACGCCGTT 963616 21 100.0 33 NNNNNNNNNN .......T.....G....... GCCGCTGCCGCCGTTGCCTCTGACCACGCCGTT 963670 21 100.0 45 NNNNNNNNNN ..................... GCCGTTACCGCCGTCGCCGCCGTTGTTGAAACCGTTGCCACCGGC 963736 21 100.0 24 NNNNNNNNNN ........GC......GC... ACCGGTGGCACCGGTACCACCGTC 963781 21 100.0 36 NNNNNNNNNN ..................... TCCAGCGATATTTGACCCGTTGCCGTGCCCTCCATC 963838 21 100.0 36 NNNNNNNNNN .......T............. CCCCAAGCCGGTGACCACGGTGCCGTTGCCGGCGTT 963895 21 100.0 24 NNNNNNNNNN ......CT............. GCCGTTGCTGCCGTTGACGCCGTT 963940 21 100.0 1 NNNNNNNNNN .T.....T............. NNNNNNNNNN ========== ====== ====== ====== ========== ===================== 17 21 55 GCCGCCGCTGCCGCCGTTGCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [18-11] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [31.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [50,5470] Score: 0.18/0.18 # # Final direction: R [0.27,1.33 Confidence: HIGH] >NC_010628 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1229023 37 100.0 33 CCGTCCACAT ..................................... CTTACCGCACTTGATTGGGTATACAAAGCCAAT 1229093 37 100.0 33 CAAAGCCAAT ..................................... TCTATTATGTATACTTCTGCCCGGACTACGAGA 1229163 37 100.0 34 GACTACGAGA ..................................... CTAGGGCTTTTTAGTGACTTTCTAAATCTAAAAG 1229234 37 100.0 34 AATCTAAAAG ..................................... ATATTGGGAACCCATACACCATCTGTCTTAGGTT 1229305 37 100.0 36 GTCTTAGGTT ..................................... TACTGCCGCCACTGCCTCAGAAACAATTTTAGGATT 1229378 37 100.0 35 TTTTAGGATT ..................................... TCCGTATTTTTTCCCGATATGGCCCCTGGTTGCAA 1229450 37 97.3 CTGGTTGCAA ............................A........ GAATGAGAAA ========== ====== ====== ====== ========== ===================================== 7 37 34 ATTGCAATTTATCAAAATCCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.27%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.50,-7.40] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [511,55] Score: 0.18/0.18 # # Final direction: F [5.09,0 Confidence: HIGH] >NC_010628 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1601611 37 97.3 34 CTGTAAACCA ..........................T.......... TCCCAAGAAAAATACGGCTATCAATATCAAGATA 1601682 37 100.0 35 TATCAAGATA ..................................... AAGTTTGCTCTGATGCCATGCGATCGCTCCTTTGA 1601754 37 100.0 34 GCTCCTTTGA ..................................... CTTTCCTTGTCATCCTGTTCCCACTTACTATCCT 1601825 37 100.0 34 TTACTATCCT ..................................... TTTGTCCCCCAAGGCGGTATAGGACTTGAATAAG 1601896 37 100.0 39 CTTGAATAAG ..................................... CCCTAGTGGATGGTCAGGGTGTCCTATTCAGCAGAATAA 1601972 37 100.0 36 AGCAGAATAA ..................................... AAGGAGCGATCGCGTCTGATTTGATGAAGTTCCAGT 1602045 37 100.0 38 AAGTTCCAGT ..................................... AGGCTTGGTAAAACTCAGGGGCACAAAGGTAGCCTTGG 1602120 37 100.0 43 GTAGCCTTGG ..................................... CTTATATGGTGAGGCTTCAGGGCTAGTTCCCTTCATAAAATCC 1602200 37 100.0 37 CATAAAATCC ..................................... ATCTTCTTAGCCCACAGCTAGGGCAAATCAAGAATAT 1602274 37 100.0 31 TCAAGAATAT ..................................... GAGAACGCCGCCCATCTGGGCTGTAAAGAGT 1602342 37 100.0 34 TGTAAAGAGT ..................................... TCGTAGTGGTCGATCGCTGGATGCCTTCTAGTAA 1602413 37 100.0 35 CTTCTAGTAA ..................................... CAATTACATCCATCTTTACCTGAGCCTAAGAATTT 1602485 37 100.0 36 CTAAGAATTT ..................................... ATTGGTTTTTTGTAAAAAGCACGTCAACTAGTGATT 1602558 37 100.0 41 ACTAGTGATT ..................................... GTCCGCAGGTCTTCAGATAATCGAACAATTGGTTTGTCCTT 1602636 37 100.0 41 GTTTGTCCTT ..................................... CATCCAAGCGCGTTCTGCTTCGTTGAGTTGTTCAAAGCCAG 1602714 37 100.0 35 TCAAAGCCAG ..................................... TTGGATAATTGCACCGCGAAGCATTTAAGCACTGG 1602786 37 100.0 36 TAAGCACTGG ..................................... TCCGCGTTTCATTCGCTTGTTAGCGATCGCAGCTAA 1602859 37 100.0 37 TCGCAGCTAA ..................................... AAGGTCAACATCAGCAAGAGTCAGCATACCGCTAAAA 1602933 37 100.0 37 ACCGCTAAAA ..................................... TATTTATTTCAAAGAAAAGATGCGGGTATTGATGTAA 1603007 37 100.0 36 ATTGATGTAA ..................................... CCTGCGTATTGGCTTCGCTACACTTCTGGTAGTGAG 1603080 37 100.0 37 TGGTAGTGAG ..................................... ACGCGATCGCGGTTCGAGCATTTCCCCGTTATGTTCA 1603154 37 100.0 35 GTTATGTTCA ..................................... CACTGATGTGCCAAAGGTAGATAGGCCCAAGAGAT 1603226 37 100.0 33 CCCAAGAGAT ..................................... CATTTCAAACTCAGAAAACTGAAGCTTTGCCAT 1603296 37 100.0 37 GCTTTGCCAT ..................................... TTGAATGTCACTTTGTACAATCAAGTCTGTCACGTCT 1603370 37 100.0 35 TGTCACGTCT ..................................... TTGACCCCTCCCCCCACTGTGTGGTATGGTTGAAT 1603442 37 100.0 35 ATGGTTGAAT ..................................... TTGTCAGTTCAAGCTGCTGTTCGTCAGGCTACTGT 1603514 37 100.0 33 AGGCTACTGT ..................................... AACTCGAAAGCCCCGCGAGGAAGCTTATCAGTT 1603584 37 100.0 35 CTTATCAGTT ..................................... CTTATAGCGATCCGTTTCACCTTCACTACCGACAC 1603656 37 100.0 33 CTACCGACAC ..................................... GATGATTTTTGCTGCTGTCCCCGTCATTTACCT 1603726 37 100.0 33 TCATTTACCT ..................................... ATTACATTTTGTTTTTGTGCTGAGGCAATTCTT 1603796 37 100.0 36 GGCAATTCTT ..................................... CGGAGACTAAAGTTAGACTGAGCGTCTAAAACACCT 1603869 37 100.0 34 TAAAACACCT ..................................... CTTTACATCTTCACCTTGTCGTTCACTGCGATGT 1603940 37 100.0 36 ACTGCGATGT ..................................... ATTAACGACCATCCAAGTAGCAACAATAGCTATAAA 1604013 37 100.0 37 TAGCTATAAA ..................................... CCCCGGTGCAGAGGGGAGTGAGCTAGTTGCTATCAAA 1604087 37 100.0 34 TGCTATCAAA ..................................... TTTAATCCGCCCTGACAAAACCCTATACCCTCAA 1604158 37 100.0 37 ATACCCTCAA ..................................... CACCCAGGGGATTTCCTTCCTGCGATCGTGGAATTTT 1604232 37 100.0 35 GTGGAATTTT ..................................... AGAATCCTCGGAGTATTCCGTCTGGGGACGTATTG 1604304 37 100.0 40 GGACGTATTG ..................................... TTAATAGAGCTAATCAAAAGGGTGCAGGGCGATCGCCCTC 1604381 37 100.0 36 GATCGCCCTC ..................................... TTTTTTAATAGTATCACCAGCATCATTGTCATACTC 1604454 37 100.0 36 TGTCATACTC ..................................... AAATTTAGCTTGCAGGCGATCGCTGTGAGCTAAGGA 1604527 37 100.0 34 GAGCTAAGGA ..................................... TCTCCTCCTCAATATCTTTAAGTTTTAGTTTCTT 1604598 37 100.0 36 TTAGTTTCTT ..................................... AAGGGTTACACCCCAGGACTGCCCCAATTTATCCAA 1604671 37 100.0 38 ATTTATCCAA ..................................... CTGCCCTTCCCAATGACTGGATTGGGAAAAAGATGGAT 1604746 37 100.0 36 AAAGATGGAT ..................................... CGGGCATCAACTGTCATTCTGACCGATCGCCCATCA 1604819 37 100.0 35 TCGCCCATCA ..................................... ACCGTTCAACTGCCTCTGCCACGCCCCCTCGTTAG 1604891 37 100.0 36 CCCTCGTTAG ..................................... TTATTTGCAAGTGTGTGCTTTACCGCAGCTGCATAC 1604964 37 100.0 41 AGCTGCATAC ..................................... CTTAGTGTATCCTCCCACCTCAACATATTCACCATGCATCT 1605042 37 100.0 33 CCATGCATCT ..................................... CACTTGCGATCGCTTGCTACTTTCCCGCCAAGC 1605112 37 100.0 35 CCCGCCAAGC ..................................... GCGAAAAAAGATTCTACTACGGGGAAGTTTCCTAG 1605184 37 100.0 34 AGTTTCCTAG ..................................... GTAATTGCAACCGAAGATTGCACTTTATGACTAA 1605255 37 100.0 38 TTATGACTAA ..................................... TTTACATGTCAAGACTTGCTAAAGATAAAGAGTTAAAG 1605330 37 100.0 36 AGAGTTAAAG ..................................... ATTGCGGCATTGAGGCATTCCAAAATGATTATTCAT 1605403 37 100.0 34 GATTATTCAT ..................................... TATAAAGTATGGAGTGCTGGCGAGTATTCCGAAA 1605474 37 100.0 36 TATTCCGAAA ..................................... GTTGGCGGCCAGCAGGGTCATCGACATCCTAAAAGA 1605547 37 100.0 35 TCCTAAAAGA ..................................... TATCTAAAGCAGTTTTAGGGTTCATAGCGACATTA 1605619 37 100.0 34 AGCGACATTA ..................................... TAATATTGAAGGCTATTTTGATATCCTCACCAGA 1605690 37 100.0 34 CCTCACCAGA ..................................... CACAGGCTTCTGCTATTTTCATGATTCTGATTGC 1605761 37 100.0 34 TTCTGATTGC ..................................... TCTATCAATTGTATGAATAGCGATCGCCATATCC 1605832 37 100.0 CGCCATATCC ..................................... AGCGGGAGCC ========== ====== ====== ====== ========== ===================================== 59 37 35 GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.40,-7.50] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [56.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [369,488] Score: 0/0.18 # # Final direction: R [0.27,4.91 Confidence: HIGH] >NC_010628 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3338247 37 100.0 37 CAGCAACTTG ..................................... ATATTATTTCACAACTGGTAAAAACGCTAAAGGTTTA 3338321 37 100.0 40 TAAAGGTTTA ..................................... GTTAAACTGGTCTGCTTTGCCGATACCCAAATATTGCTAG 3338398 37 100.0 33 ATATTGCTAG ..................................... GAAATCAGAAACATCTTTGATTTTTTTGACCAT 3338468 37 100.0 40 TTTTGACCAT ..................................... TTTTTGGGGAAGAGGTAATCTGAAACAGAATTTAGTATTT 3338545 37 100.0 35 TTTAGTATTT ..................................... GTTGTTACTTAATCCGTCAAATAGTCCCATTAGAT 3338617 37 100.0 36 CCCATTAGAT ..................................... TTTGTGTTACTTGAATTACTTTGTTGTAATATGCTG 3338690 37 100.0 34 TAATATGCTG ..................................... CAGCAACGTATGCTGTGGGATGCTGGATATGCAC 3338761 37 100.0 35 GGATATGCAC ..................................... TTGCATATCTCCATCCAACTGTATTCAGCTGAAAA 3338833 37 100.0 34 CAGCTGAAAA ..................................... CTTCGGCATAACCATTCTTCCACCTCCAGTACCA 3338904 37 100.0 35 TCCAGTACCA ..................................... ATAAACTAAATGCCAGAAAAGATTAGGGTCAATCT 3338976 37 100.0 37 GGGTCAATCT ..................................... TTCTGGTTTGACTTTTTCTATTTTCAAGAGTTGCCAA 3339050 37 100.0 38 GAGTTGCCAA ..................................... AAAAGCCTGGGCTAAATCAATTCCGTGAACAGTTCCAA 3339125 37 100.0 37 ACAGTTCCAA ..................................... TTTATTCCGCCCTGGTTTGAATTCTGATGGCACCGTT 3339199 37 100.0 35 TGGCACCGTT ..................................... CTAATCCTGGGCAATGTCCGGCGTATTGGCTTCGC 3339271 37 100.0 33 TTGGCTTCGC ..................................... TCTCATGAATGCCCTACTTATACATTTTTTCAG 3339341 37 100.0 35 ATTTTTTCAG ..................................... CTTATAGCTTGTGGCAGGGTAGCCCATGTAGGCTT 3339413 37 100.0 34 ATGTAGGCTT ..................................... AACCAATAAGCCGGACACTGAGAAGGATTGGCGG 3339484 37 100.0 35 GGATTGGCGG ..................................... TCCCTTTGATTGCTGCTGTTCCTTTTGCTTCACAA 3339556 37 100.0 34 TGCTTCACAA ..................................... GCATTGTGATTTCCATGCTTGCAGTACTCCATCT 3339627 37 100.0 39 TACTCCATCT ..................................... TTATTGCAGATATGATATGTGCAGTCAGGAATATAATTA 3339703 37 100.0 37 AATATAATTA ..................................... TCTATTGTTGTTGTTTCAAAGTCCAAAAAAAGCATTA 3339777 37 100.0 37 AAAAGCATTA ..................................... TCGCGCAACTTATCCGCCCAAAGCTTTGCAGCCATTT 3339851 37 100.0 33 GCAGCCATTT ..................................... ACTTACTCGCAGTTGAGTCTGGGGATTATTTCA 3339921 37 100.0 36 GATTATTTCA ..................................... TTTTCCATAATTCTTTTGCAAGTATTCCTTCCCTTG 3339994 37 100.0 37 CCTTCCCTTG ..................................... CTGAGTTTGTGGTGCTTCCCCGCGAATCTCGACAAAT 3340068 37 100.0 34 CTCGACAAAT ..................................... GTAAATATGCTGGTATTTGAAGCAAAACTTGAAG 3340139 37 100.0 39 AAACTTGAAG ..................................... TCTATCAGATAAACTATCAGGAGTAGGATAGTCAAACTC 3340215 37 100.0 32 AGTCAAACTC ..................................... GCTCACGATCTGCTCACGTCTCTACAATAAAA 3340284 37 100.0 36 TACAATAAAA ..................................... CTTTCGCTGAATGGGCAGTTAGTCCAGCAGGAAGTG 3340357 37 100.0 39 GCAGGAAGTG ..................................... CTATATGTTGCGAGGCTATTGTATTGTAGGTTAGAACAA 3340433 37 100.0 35 GTTAGAACAA ..................................... TCTTGGTTTGAATAATTCCAATGCTTCCAGTACCT 3340505 37 100.0 35 TCCAGTACCT ..................................... TTGGCACTCCCGTAATGGTTCTAAATGCTTTTGTT 3340577 37 100.0 40 TGCTTTTGTT ..................................... TTTACCGTGCTGCTGATGGCGATCGCGAGTATTTCGATGA 3340654 37 100.0 36 ATTTCGATGA ..................................... CCTTTCTAGGGAGCGCCCCTAGTATTATTGCTTGCG 3340727 37 100.0 36 ATTGCTTGCG ..................................... CCTACCGTCGCCCCGGTGGCAAGCCTCTGCGGCGTG 3340800 37 100.0 37 CTGCGGCGTG ..................................... CCATTTCTGTGCCTCATTTCGTATCTGTTTCCGTAAA 3340874 37 100.0 34 TTTCCGTAAA ..................................... TTGCACCATCAATTGTTTGTGATGTTGTTGTGGC 3340945 37 100.0 35 TTGTTGTGGC ..................................... AAAAGACGACTGGGAACACAAGCGGACACAGTACG 3341017 37 100.0 36 ACACAGTACG ..................................... ATGAATCAACAATGATCCGGCGCCATTGAGTATTAA 3341090 37 100.0 34 TGAGTATTAA ..................................... CCTATTCTTCAATTTTTACGATGTCTTCCAAGCC 3341161 37 100.0 CTTCCAAGCC ..................................... AGCGGGAGGC ========== ====== ====== ====== ========== ===================================== 41 37 35 GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.40,-7.50] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [107,176] Score: 0/0.18 # # Final direction: R [0,4.5 Confidence: HIGH] >NC_010628 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 6982737 37 100.0 33 TCAGATTTGC ..................................... CAGGAGGCATCTAGAGGAATCCGATGGATGGTT 6982807 37 100.0 34 ATGGATGGTT ..................................... ACCATTAATCGCCATCCGCCAGATAGAATCCAAT 6982878 37 100.0 35 AGAATCCAAT ..................................... ATTCAAGATTATTTGGGGCATCGGAATATTAATCA 6982950 37 100.0 34 ATATTAATCA ..................................... GCAGAGCTTCTTCCCGGATGTTTTGAAGTTCGCC 6983021 37 100.0 34 GAAGTTCGCC ..................................... ACCAGGATTACCAATACACTCAGCAGTAAAACAA 6983092 37 100.0 33 AGTAAAACAA ..................................... CGGTAAGCTTATTCTCATCAAAAGTGACATCCT 6983162 37 100.0 35 GTGACATCCT ..................................... GGACGTAACGAAAAAGGTATTCGCGAAAAGTTCTG 6983234 37 100.0 34 AAAAGTTCTG ..................................... TATTAAGTGCTGTAGCAAATTCAGGTAATCTATC 6983305 37 100.0 33 GTAATCTATC ..................................... TTCCGCACCGTTGTGGAACATGCCGTCGTTACT 6983375 37 100.0 36 CGTCGTTACT ..................................... ATTAGGAGTGCAATGCCAGCGAAATACACACATTGG 6983448 37 100.0 33 CACACATTGG ..................................... ATCCCATCGCATCTGCTATCCCCTGAGTAGCGC 6983518 37 100.0 TGAGTAGCGC ..................................... CCACTCAGTT ========== ====== ====== ====== ========== ===================================== 12 37 34 CTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [7,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-9.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [505,447] Score: 0/0.18 # # Final direction: R [0,0.74 Confidence: HIGH] >NC_010634 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1890510 28 100.0 32 NNNNNNNNNN ............................ AATCGTTGGTTCTGCGTTTGCTACAGTCACCA 1890570 28 100.0 32 NNNNNNNNNN ............................ GCAAAGAAGACCACTCAGATGAGGTAAAGCAT 1890630 28 100.0 32 NNNNNNNNNN ............................ TAACCCACTGTTAAATGCAGAGGGTAATGCTG 1890690 28 100.0 32 NNNNNNNNNN ............................ AAGTAAGGCACAGAAGGTTGTCACAATGACAA 1890750 28 100.0 32 NNNNNNNNNN ............................ ATTTCCGCCAGATTCCATAGCGCTATTACTAA 1890810 28 100.0 33 NNNNNNNNNN ............................ CAAACGGATTACAAAAATGGGGTGTATTTAGCA 1890871 28 100.0 32 NNNNNNNNNN ............................ ATCTTTAAACATATTTAAATCTATTGCTAATT 1890931 28 100.0 34 NNNNNNNNNN ............................ CCGATGGTCCGGCAATACCGATAACCACTTTTGA 1890993 28 100.0 32 NNNNNNNNNN ............................ AACAACGCCGCAGACGCAACCAGTGCCAATAC 1891053 28 100.0 33 NNNNNNNNNN ............................ CCTGCCTGAATAGGGTGCATCAGCAAACCAAAT 1891114 28 100.0 32 NNNNNNNNNN ............................ TCAAAAACCTGATGGCAGTGGCCCGGCAATAT 1891174 28 100.0 32 NNNNNNNNNN ............................ TCAGGCTGGCGGCGAAATCACCACCTTTGCAT 1891234 28 100.0 1 NNNNNNNNNN .....................CC.AT.. NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 13 28 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [63.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [497,36] Score: 0.18/0.18 # # Final direction: F [2.1,0 Confidence: HIGH] >NC_010628 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 723990 36 97.2 37 AAGGTCAGCC .........T.......................... AACTTCAATCGCTTTTGCTGCACCGTATTTTTCGGCA 724063 36 91.7 36 TTTTTCGGCA .........T........T............G.... GATTCAGGAATACTTACAGGAGATTTTATAATCTTT 724135 36 100.0 36 TATAATCTTT .................................... TTTTATTACTTGACTTGCTAAAACAAAACCTTTATA 724207 36 97.2 38 AACCTTTATA ..................................G. AACGGCGTGTCTTCAAAGGTAAAGGTTTGGCTTTGGCC 724281 36 100.0 GGCTTTGGCC .................................... GCTTGAAACT ========== ====== ====== ====== ========== ==================================== 5 36 36 GTTGCAAAACACCTCATCCCTGATAGGGATTCAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-6.50,-6.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [58.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [354,48] Score: 0.18/0.18 # # Final direction: R [0.18,0.68 Confidence: MEDIUM] >NC_010717 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 4541190 31 100.0 34 TGCTGGCGGG ............................... CAACCTTGCGCCCCCTGCTGGTGCAACAATCCTG 4541255 31 100.0 34 AACAATCCTG ............................... TTGGCGGAATCGGTGGCGGTGCAGGCAGTGCTAC 4541320 31 100.0 34 GCAGTGCTAC ............................... CCACCAACGCTAGGGCAAGTCGCCCTGCTTGAGG 4541385 31 100.0 34 CTGCTTGAGG ............................... GCAGTTATGTTGCCCTCAGCCTGGGTCACTCTGG 4541450 31 100.0 33 GTCACTCTGG ............................... TGCAAGAGGAGCTAGAGCAAGCAGGTGCACCAC 4541514 31 100.0 37 GGTGCACCAC ............................... AACAAGATCACTGAGAGGAGTTCCGCGAAATGAGCGA 4541582 31 100.0 35 AAATGAGCGA ............................... GCAGTCTGTATTGCCGCCTGTCTGTCAAGCTGCTC 4541648 31 100.0 34 CAAGCTGCTC ............................... TCATTGTCAAAGAACAGATCAACATCTCCTTGGT 4541713 31 100.0 36 TCTCCTTGGT ............................... TTCTAGACAATTTTCACGGGCACAGGAGCGCTCACC 4541780 31 100.0 33 AGCGCTCACC ............................... TCTTGCTCTTGCCCATGTTCTGGTTGTTCTGGG 4541844 31 100.0 36 TTGTTCTGGG ............................... TTGTGCTTCCTTGATCTTCTCATAGCGATTGGTATT 4541911 31 100.0 36 GATTGGTATT ............................... ACATAGTTCCAAAATTCAGCCGATTCAGGCACAACA 4541978 31 100.0 37 AGGCACAACA ............................... ATCACATTGTTCAGATCAAGGCTACCTGGCTCTGGCC 4542046 31 100.0 34 GGCTCTGGCC ............................... TTCTTAATCCGGTAGTCGGAGGTGGAGAACGAGA 4542111 31 100.0 34 GAGAACGAGA ............................... GCAAAGTAATGACTGATGGCCGAATTGAGAGCCT 4542176 31 100.0 35 TTGAGAGCCT ............................... CTGATCACAGGTGCAAACCGGTTTGGTTATGACAA 4542242 31 100.0 35 GTTATGACAA ............................... TACGGGAGAGCTAGTCCCAATGATGCTCATTGGAG 4542308 31 100.0 35 CTCATTGGAG ............................... TGCCTGAGCCTTGTTTGGTTTTGTACCCAGTGGCT 4542374 31 100.0 35 CCCAGTGGCT ............................... AGAAAATAGTTTGAAAAGGGGCTTGACAGCCGTCA 4542440 31 100.0 34 ACAGCCGTCA ............................... GTCATCCTCATACAACTCAGCCTGCAAGTGCCTC 4542505 31 100.0 34 CAAGTGCCTC ............................... ACCACACTGCCTCATCAATACAAGATCCCCGTCG 4542570 31 100.0 34 ATCCCCGTCG ............................... TTGTAAAGCTCAGACATGGGGGCACCCTCTCCGC 4542635 31 100.0 35 CCCTCTCCGC ............................... AAACACACCAAGATTTTGTGCACCCTGGAACCAAC 4542701 31 100.0 35 TGGAACCAAC ............................... ACCATGAACAACCAAGTATTCGCCAACGCCACCCA 4542767 31 100.0 33 ACGCCACCCA ............................... CCATTTACAGACAGGCCTGGGGGCGAGGTTGCA 4542831 31 100.0 35 CGAGGTTGCA ............................... ATAATCAGAATAGCCCCGGCGTTATAAATGGTGTG 4542897 31 100.0 34 AAATGGTGTG ............................... CCGATCTTAAACCCGCCAATATAGTTGTTGGCAT 4542962 31 100.0 33 TTGTTGGCAT ............................... GGGATCGATTTGCCGGGCCTGCTCTTGCTGCGC 4543026 31 100.0 34 CTTGCTGCGC ............................... GGCCTCTAGTATCTTCTGTCCCCGGGCGGTGCTG 4543091 31 100.0 34 GGCGGTGCTG ............................... TGCGCCGCGTGTTTAACAAAATTACTGAGAGGAG 4543156 31 100.0 36 CTGAGAGGAG ............................... ATACAACCGCCGATTTGCTACGCTGGCTCGGCGGTC 4543223 31 100.0 34 CTCGGCGGTC ............................... TACAAGTACGCGCCTGCGCGCGCAGCGGCGCCGG 4543288 31 100.0 35 GCGGCGCCGG ............................... TGTAGCGCGGCGTTCTCTGCGTCGGTCGCTGCTGC 4543354 31 100.0 35 TCGCTGCTGC ............................... CAGGCCTCTGCCGGGCGTTGGAATGACCGTTCGGC 4543420 31 100.0 34 ACCGTTCGGC ............................... ATGAAGTCCGGCATGGGCAATAGGCTCAGCACGT 4543485 31 100.0 35 CTCAGCACGT ............................... TTGCACCAGCGCGTACACGCTGTATTCGCTACCCG 4543551 31 100.0 36 TCGCTACCCG ............................... CGCTTCTCCGGATCAATAGGTCTGGCGGAGTAGAAA 4543618 31 100.0 35 GGAGTAGAAA ............................... AGGAAACGGTCGCCATTCGGCAGGCTGCGGCGCAG 4543684 31 100.0 34 TGCGGCGCAG ............................... AGGCCACGGATCAGGCGGTTATTCATGTACGAGG 4543749 31 100.0 35 ATGTACGAGG ............................... TTCAGCGCTGCGGACTCCATCACCAAGATGTGGTC 4543815 31 100.0 34 AGATGTGGTC ............................... ACAGTGGCTGTTAGCTCCAGGACTGTGCTTGCAG 4543880 31 100.0 36 GTGCTTGCAG ............................... CGCAATATCCGAGACGGTGTAGTTGTGGATAGACGA 4543947 31 100.0 36 GGATAGACGA ............................... ATGGAGGAGGCAGGCCTGCATGGGCTGCAATTGGAC 4544014 31 100.0 34 GCAATTGGAC ............................... CTCAGACCGCTTTTTGAGCGTGTCACTGTACAGC 4544079 31 100.0 35 ACTGTACAGC ............................... CCAGTTTGCAGGCTTTTGGCCTGACTTGCGCTGGC 4544145 31 100.0 33 TTGCGCTGGC ............................... ACCGCAGCCCGGTAGGCCCACTATGTTGTCGGC 4544209 31 100.0 36 TGTTGTCGGC ............................... TTCTCTATAGGTGCCTCACCCCTCGAACGTCGGCGA 4544276 31 100.0 35 ACGTCGGCGA ............................... TACGAAGTGACGCGCGTACCGTCCGCACGCTCCGC 4544342 31 100.0 34 CACGCTCCGC ............................... GGGCAGAACAAGGGTGGCCGCGACGCGCTCTATG 4544407 31 100.0 34 GCGCTCTATG ............................... GCGTGCACGCAGGATGAGTCGGGTAAGTGGTGTA 4544472 31 100.0 35 AAGTGGTGTA ............................... TCGCAACGCCCGCCGCTGGTACTTCGGTCAATCTT 4544538 31 100.0 35 GGTCAATCTT ............................... GTGCACTACTTCACCAAAGATCGCGCCGACCCCAA 4544604 31 100.0 34 CCGACCCCAA ............................... GCCAAGAAGACGGACACCACGCACGTTATCGCGC 4544669 31 100.0 35 GTTATCGCGC ............................... TTGTGGGACACGGCAGATATGGAGATGTGGGAAAG 4544735 31 100.0 34 TGTGGGAAAG ............................... AGAACATGAGTGTCCAAACGCCTGACGCGCAGAC 4544800 31 100.0 34 ACGCGCAGAC ............................... GCTACCACCTGAACGGCGCTCGCCGCCGCCGACC 4544865 31 100.0 34 GCCGCCGACC ............................... CCCTTGGTGCCTATTGTGCCTAAATCTAGGCACA 4544930 31 100.0 36 TCTAGGCACA ............................... CACACCGACGGCGGCGGCGTGCGTACGTTGCGCCTC 4544997 31 100.0 35 GTTGCGCCTC ............................... GGCACGGGGACATCGGCGGTGCCGTCAGACGCTAG 4545063 31 100.0 36 CAGACGCTAG ............................... AACGCGTTGTAAGCCTCGTGCCCGTGCTGCGTGATG 4545130 31 100.0 35 CTGCGTGATG ............................... CGGCAATCGACGGCGATCTAGGCCCCGACGATTTA 4545196 31 100.0 37 CGACGATTTA ............................... AGCGACGCAATTGCACTACTGCTCGAAGAAGGCTGTA 4545264 31 100.0 34 GAAGGCTGTA ............................... GCCAAGGGCTGGACGAACCGGCGGATTCTGGCGG 4545329 31 100.0 34 ATTCTGGCGG ............................... GCGCTTGCCCAAGCCTGACATTTCGCACAACTCC 4545394 31 100.0 34 GCACAACTCC ............................... CACGCGCTATAGCGGCCGTAGTTGCTACGTCCGG 4545459 31 100.0 35 CTACGTCCGG ............................... GTGCACTACTTCACCAAAGATCGCGCCGACCCCAA 4545525 31 100.0 34 CCGACCCCAA ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 4545590 31 100.0 35 AAACGACCGC ............................... AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC 4545656 31 100.0 35 CGGCGATGAC ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 4545722 31 100.0 36 TTCGATCCAA ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 4545789 31 100.0 34 CTCGCGCCAC ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 4545854 31 100.0 34 GTCGGTGCGA ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 4545919 31 100.0 36 GTTGTCCGCC ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 4545986 31 100.0 34 CTGGGATACC ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 4546051 31 100.0 34 CCGTCGCAGA ............................... GAGTGCCCGGGGTCGGTGTCAGCGCAGGCTGGCC 4546116 31 100.0 CAGGCTGGCC ............................... ATGACGCGTC ========== ====== ====== ====== ========== =============================== 76 31 34 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [5,6] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-5.10,-4.90] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [43.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [189,20] Score: 0.18/0.18 # # Final direction: F [5.18,0.64 Confidence: HIGH] >NC_010628 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 7769881 37 97.3 39 GAAACAGCTA ....T................................ CACCCACTACAACAGAAAAGAGATTATGCCCTAGCAGTC 7769957 37 100.0 40 CCTAGCAGTC ..................................... TTTTGGGATGCTAAACAAAAAGAATGGATTCGCGATGATA 7770034 37 100.0 34 CGCGATGATA ..................................... TCTCTATCTACAAAATCAATAGCTCCAGTGACAA 7770105 37 100.0 40 CCAGTGACAA ..................................... TTTTGGGATGCTAAACAAAAAGAATGGATTCGCGATGATA 7770182 37 100.0 34 CGCGATGATA ..................................... TCTCTATCTACAAAATCAATAGCTCCAGTGACAA 7770253 37 100.0 34 CCAGTGACAA ..................................... ATGGGTAACTAATCATTCAAAAGCCTACCCACTC 7770324 37 100.0 CTACCCACTC ..................................... TAGATGATACG ========== ====== ====== ====== ========== ===================================== 7 37 36 GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.40,-7.50] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [68.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [224,71] Score: 0.18/0.18 # # Final direction: R [0.45,4.91 Confidence: HIGH] >NC_010694 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 946115 28 100.0 32 NNNNNNNNNN ............................ TTCAACAAGAAGCGCGATGAAGAAATTGCTGC 946175 28 100.0 32 NNNNNNNNNN ............................ GTATTGACTGAATCGGCAAATTCCCATCAGGT 946235 28 100.0 32 NNNNNNNNNN ............................ TTTGAAACTGGCGAGAGAGTCGGCGTGAAACA 946295 28 100.0 32 NNNNNNNNNN ............................ AACTCGTCTAGCCAACGCCGCCCGCCGCGCTC 946355 28 100.0 33 NNNNNNNNNN ............................ AACTATGAGGCACTCATTAATGTCTTTGTGCGG 946416 28 100.0 32 NNNNNNNNNN ............................ TGGCATCGCTGAAGCTGGGCCTGAATCATGAC 946476 28 100.0 32 NNNNNNNNNN ............................ GGAGAAATGGAAAGCATTCATGACCATGAAAC 946536 28 100.0 32 NNNNNNNNNN ............................ CTTCTGGGCCTGTCCAGTCAGTTTACGACCTA 946596 28 100.0 32 NNNNNNNNNN ............................ TGTTCGGTGCTGCGAATTCCAGTGTGGCTTAT 946656 28 100.0 32 NNNNNNNNNN ............................ TCAGAACCCCGAATTGCTTCGTCGATATAGTC 946716 28 100.0 32 NNNNNNNNNN ............................ TGTTAAATGAACACCCAAGATTTTGCCTACGT 946776 28 100.0 32 NNNNNNNNNN ............................ ACACCAACTTGGCCCGTTTCCCACACCAACTT 946836 28 100.0 32 NNNNNNNNNN ............................ TGGCATGGTGTACCGCCTACCAGTACATCGGG 946896 28 100.0 32 NNNNNNNNNN ............................ ATGAATATAAATTCCGTTTCCGGGTCTTTCTC 946956 28 100.0 32 NNNNNNNNNN ............................ ACCCAGGTGCTTACCCCAGAGAACTAACAAGT 947016 28 100.0 32 NNNNNNNNNN ............................ CACAGGCAGTCTGATTTGCACTGACATTCTGA 947076 28 100.0 32 NNNNNNNNNN ............................ CGGCAAACTTTAATAGCTGCATGCGGATTCCT 947136 28 100.0 32 NNNNNNNNNN ............................ GCGTTCCGAACATTGAAAATCTCCGCATCATC 947196 28 100.0 32 NNNNNNNNNN ............................ TTCCAGCTCACGCTCCGTCCAGTCACGCATGG 947256 28 100.0 32 NNNNNNNNNN ............................ TTCGGGAACGGCTCGGAATAACTGTTGTGGCT 947316 28 100.0 31 NNNNNNNNNN ............................ AACGTCTGATTGGTATCGCATTCCACGCTGC 947375 28 100.0 32 NNNNNNNNNN .................T.......... TGTGATACCCGGAAGCGCTTTTAATTCTGCGG 947435 28 100.0 32 NNNNNNNNNN ............................ GGTAACGATGGGTATGAGATTAACTGCGGAGA 947495 28 100.0 32 NNNNNNNNNN ............................ ATGAAAATCGGCGAAAAAATTAAACAGATCCG 947555 28 100.0 1 NNNNNNNNNN ........G.......A.C..C.TA..T NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 25 28 32 GTTCACTGCCGTACAGGCAGCTTAGAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [7,6] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [130,470] Score: 0.18/0.18 # # Final direction: F [1.92,0.18 Confidence: HIGH] >NC_010628 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 7770465 37 100.0 33 TTCGGATGAA ..................................... GTGGCGAATTGGAGAGCGATCGCTGGGATTGCC 7770535 37 100.0 35 TGGGATTGCC ..................................... TGGCTTTTTCAATTGCAGAGGCAACATCTTCTTCT 7770607 37 100.0 37 ATCTTCTTCT ..................................... TTATATTTCGCTTCCTGCGCTTGCGGAAAGTGTCTGT 7770681 37 100.0 34 AAGTGTCTGT ..................................... AGTTTTCTCTCTCGTCTTGAGCGCGATTCTAAGC 7770752 37 100.0 34 GATTCTAAGC ..................................... GAGGATAATGTTTTCTAGTGCTGCCCTTCCCAAT 7770823 37 100.0 34 CCTTCCCAAT ..................................... TTTTTCAGGAAGGCGAACAGTCTTTACAGGAAGA 7770894 37 100.0 36 TACAGGAAGA ..................................... GTGATTTTTGCTATTGTTAGTGCATCTATTATTTTT 7770967 37 100.0 34 TATTATTTTT ..................................... TTTACTTTTGACCCTCCCTCCTTCTGTCCAGCGA 7771038 37 100.0 35 TGTCCAGCGA ..................................... ACCGGTACTTTTTTGCGTTTCACTCCTGCGGTTTT 7771110 37 100.0 47 CTGCGGTTTT ..................................... GTATGCCAAATTTCGGCAAGTTGCGCCGCGAAAGCACATGCGGTTTT 7771194 37 100.0 36 ATGCGGTTTT ..................................... ATGGGATTAGCTATGGGGCAACTAGCCAAAGCGCTC 7771267 37 100.0 CAAAGCGCTC ..................................... TGCAGGAGCC ========== ====== ====== ====== ========== ===================================== 12 37 35 GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.40,-7.50] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [808,431] Score: 0/0.18 # # Final direction: R [0.27,4.5 Confidence: HIGH] >NC_010634 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2882900 28 100.0 32 GCCACGTAAC ............................ TAGAGTGTTTTTTCTGACGATGTTCCTTGCTG 2882960 28 100.0 32 TTCCTTGCTG ............................ CGCATTTGCTCAACTTCTTTATTAGCATTAGC 2883020 28 100.0 32 TAGCATTAGC ............................ GAATCAATATATCCAATTTTCCCGCCCCGTGT 2883080 28 100.0 32 CGCCCCGTGT ............................ TACTGCTCAGATATTTGGCGTGTCTTTTCTTG 2883140 28 100.0 32 TCTTTTCTTG ............................ ACCACCTCGCAATTCTTCCGCCAAATGTTCCC 2883200 28 100.0 33 AAATGTTCCC ............................ AGAAATGAGTAACGTTCAATTAGCTGCGGAATT 2883261 28 100.0 32 CTGCGGAATT ............................ AAGAGCCGCCTTCTTGTCTTCCGCGCGTTGTT 2883321 28 100.0 GCGCGTTGTT ............................ AGTAAGATAAT ========== ====== ====== ====== ========== ============================ 8 28 32 TTTCTAAGCTGCCTGTGCGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [45.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [421,339] Score: 0/0.18 # # Final direction: R [0,1.01 Confidence: HIGH] >NC_010644 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 266140 36 100.0 29 NNNNNNNNNN .................................... CCTTTATTTCGGAGTACGGTGACACTATA 266205 36 100.0 30 NNNNNNNNNN .................................... ATATTGTCCGCGGCAAAGGCAACCCGGAAA 266271 36 100.0 30 NNNNNNNNNN .................................... TCTGCTGCTCCTTATACATATCCAAATATT 266337 36 100.0 30 NNNNNNNNNN .................................... GCAAAAGTGTAATGGTCGCCGGAATTAACC 266403 36 100.0 30 NNNNNNNNNN .................................... ACAATTACAGTATAACATTGACAGAACAAC 266469 36 100.0 30 NNNNNNNNNN .................................... CTCTTATAGCATATATCCCCAACACCACTC 266535 36 100.0 30 NNNNNNNNNN .................................... AGGAACGAATCCAAAAACAGAACCAGGACT 266601 36 100.0 30 NNNNNNNNNN .................................... CTTAACGCCGGGCATATATTGTATTTCGTT 266667 36 100.0 30 NNNNNNNNNN .................................... ATTAGTTACTGCATACACAACAGAAGATTT 266733 36 100.0 30 NNNNNNNNNN .................................... ATGTAATCTTCCCTATATCGTCGCTTCAAA 266799 36 100.0 30 NNNNNNNNNN .................................... TCAAGGCTTAGAGGTATGGGAACTGGTTTT 266865 36 100.0 30 NNNNNNNNNN ..........T......................... AGGGTATTGCTGTCTAAAGAGAGTGAAGAC 266931 36 100.0 30 NNNNNNNNNN .................................... GAGTCAATAACTTGATATTGTACTCACAAC 266997 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 14 36 29 ATTCTATAAAATCAATTCTCGGAGGGCAACCCTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [90.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [213,109] Score: 0/0.18 # # Final direction: F [1.05,0 Confidence: HIGH] >NC_010655 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2438206 36 100.0 30 NNNNNNNNNN .................................... AGACAGGGCTGGGGGACAAATACGTGGAGG 2438272 36 100.0 30 NNNNNNNNNN .................................... AGCACTACAGCATAATATCCAGAGCCAGAG 2438338 36 100.0 30 NNNNNNNNNN .................................... GTCTTTGTTCCTAATGGAAAGAACACCGTT 2438404 36 100.0 30 NNNNNNNNNN .................................... CTTCGCATAACACACATAATGCAAAGTCGG 2438470 36 100.0 29 NNNNNNNNNN .................................... TCATCACTCTTTCCGGCGTTCCCCTCATC 2438535 36 100.0 30 NNNNNNNNNN .................................... CATTTGACAGGGGAGACTTCCATAAGCTCA 2438601 36 100.0 30 NNNNNNNNNN .................................... AATATCTAAAATCCTCAAACCTCTACACCG 2438667 36 100.0 30 NNNNNNNNNN .................................... GGAGGAACCTTCTACCCCTACGGACCTGCT 2438733 36 100.0 29 NNNNNNNNNN .................................... TTGTGGCGCAGCATGCGCCGCGGCCATTG 2438798 36 100.0 30 NNNNNNNNNN .................................... GTAGCGCAGGTAGAGCTGACGGATGATCAT 2438864 36 100.0 30 NNNNNNNNNN .................................... GACTTTGATGCCGAAAATAATGCTTATCAT 2438930 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 12 36 29 GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.20,-4.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [36.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [73,62] Score: 0/0.18 # # Final direction: F [0.37,0.27 Confidence: LOW] >NC_010655 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================= ====== 2507589 33 93.9 35 GCTTTTTCTT -....................A........... GGATGTTGTGACGGCCAGACAAGCAACGAGCAATA 2507657 33 100.0 37 ACGAGCAATA ................................. TTTCTATTGTTTTTATCCTCCGGAATCCGGGGTACAG 2507727 33 100.0 CGGGGTACAG ................................. ATAATATGACCATTGTAGCTGATAATATATGGGG ========== ====== ====== ====== ========== ================================= 3 33 36 GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [6,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.90,-6.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [68,464] Score: 0.18/0.18 # # Final direction: R [0,5.83 Confidence: HIGH] >NC_010674 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2143426 30 100.0 34 NNNNNNNNNN .A..........................A. AAGTAAAAGGAGATTTTAATACTATTAATTTAAT 2143490 30 100.0 36 NNNNNNNNNN .............................. ATTTTCATAATGTTTTAATGTAGTAATTACTATTTG 2143556 30 100.0 35 NNNNNNNNNN .............................. GATGATAGTGGTATTGGATATACAACAATAATCGC 2143621 30 100.0 34 NNNNNNNNNN .............................. TTACATTTCCTGTCCAACTTATGGTATTTTCACC 2143685 30 100.0 34 NNNNNNNNNN .............................. TTTCCTCAGTTCTATTTTTAGTAGTTGTATTTTG 2143749 30 100.0 36 NNNNNNNNNN .............................. AGAAATATCAAAGACTATGTTATCTTATAATATTTC 2143815 30 100.0 36 NNNNNNNNNN .............................. AGATACTGTACATTGCTACAACAAAAATATTGATAT 2143881 30 100.0 36 NNNNNNNNNN .............................. ATTACAATTAAACTTTGATGCTCTATACCCATTTCA 2143947 30 100.0 35 NNNNNNNNNN .............................. GAACAGGATTGTATATTTTCGTTGCATAATATACA 2144012 30 100.0 34 NNNNNNNNNN .............................. CAGATGTGAGAGTTGAAAGGCTACAGGATATTGA 2144076 30 100.0 34 NNNNNNNNNN .............................. CAGGCGATAATATTAAAGAAAAAGTAAGTATAAC 2144140 30 100.0 35 NNNNNNNNNN .............................. TCATCAATTTTCATACCATCAAATTGATTATTTGC 2144205 30 100.0 35 NNNNNNNNNN .............................. GACGGTAAGCCTTTTTTTGGTGTTGCAATAAATAA 2144270 30 100.0 35 NNNNNNNNNN .............................. AACTGGGGAGGAATTAGACCTACAGTTGTAATTTG 2144335 30 100.0 36 NNNNNNNNNN .............................. ATTTTTTTAATTCGTATGATATTATCACATAAATTA 2144401 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 16 30 35 ATTTAAATACATCTCATGTTAAGGTTAATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [152,1805] Score: 0.18/0.18 # # Final direction: R [0,0.59 Confidence: HIGH] >NC_010723 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1753789 30 100.0 36 NNNNNNNNNN ................AT............ GTGGCAACTCTTCCTCAATATTTGTTTTTGCTTCGA 1753855 30 100.0 36 NNNNNNNNNN ................AT............ TGTTGATTGATTTAGCGGACGAGTTGGGGGACGATA 1753921 30 100.0 37 NNNNNNNNNN .............................. GCAGCGTGTGCTGGAATACTTAATGTAGCTGGAACAG 1753988 30 100.0 36 NNNNNNNNNN .............................. TATAGAAGCTTTTAAAAATTCTACTAGTAAAGCTGT 1754054 30 100.0 35 NNNNNNNNNN .............................. GAAGGTTTTAAATTATTTTCAAGTGCTTTACGATT 1754119 30 100.0 36 NNNNNNNNNN .............................. TCAAACACTTGGAGTTTTTACAGATACTATAATAAT 1754185 30 100.0 37 NNNNNNNNNN .............................. TAAAGTTACTTCTTGTAAATTTAAGCAACATAAATAC 1754252 30 100.0 36 NNNNNNNNNN .............................. ACAAGTCTATAAAGTAATAATTCTTTTGGTTTTCCT 1754318 30 100.0 36 NNNNNNNNNN .............................. TCATATTGATTAATTCATTCCTGCTATACCCTGTTT 1754384 30 100.0 35 NNNNNNNNNN .............................. TCTATAAAAGTTTCAAATTTAGACTCTATACCTCT 1754449 30 100.0 37 NNNNNNNNNN .............................. ATCCTAAGTATAGTAGTATAGTCCCCTCTCTAAACAG 1754516 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 12 30 36 GATTAACATTAACATGGGATGTATTTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [76.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [225,85] Score: 0.18/0.18 # # Final direction: F [0.82,0 Confidence: HIGH] >NC_010723 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1666820 30 100.0 34 TTTTACTGTG .............................. TCATCACATACGTTAAATATATTTTTAACTACCT 1666884 30 100.0 35 TTAACTACCT .............................. ACTTTAGTTCTAAATGTTTCGCTTGTTTTGTAGAA 1666949 30 100.0 35 TTTTGTAGAA .............................. GCTAATGAGATTCCAAGAGTTAACGATACATCTAA 1667014 30 100.0 35 ATACATCTAA .............................. ACTTATTTGTATGCCTTTATTTGGGATTGTAGATT 1667079 30 100.0 ATTGTAGATT .............................. AGAGCATTAG ========== ====== ====== ====== ========== ============================== 5 30 34 GATTAACCTTAACATGGGATGTATTTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:73.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [924,173] Score: 0.18/0.18 # # Final direction: F [0.55,0 Confidence: HIGH] >NC_010729 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1410011 36 100.0 30 CGGAATAATA .................................... GCTAAGACACTTCTTCGTTATTGCTACTAA 1410077 36 100.0 30 TTGCTACTAA .................................... CGAACTCTAACAAAACAAATTCTTGATGAA 1410143 36 100.0 30 TCTTGATGAA .................................... GTAGGCTCTTTGTGCCTCTACGCCATCTCC 1410209 36 100.0 29 CGCCATCTCC .................................... TTTCAGTATGATAATAAAAATACAGCATG 1410274 36 100.0 30 ATACAGCATG .................................... TCCCGCAACGGGGACAAAATAGCGAATCAT 1410340 36 100.0 30 AGCGAATCAT .................................... AAAGAAACGCCCGTGCGGCAAAAACGAAGA 1410406 36 100.0 32 AAAACGAAGA .................................... AGGTGTAGCATTCTTTAATGAAGATAGAAAGT 1410474 36 100.0 30 GATAGAAAGT .................................... AAACAATACAAACAACAAATATTATGACAA 1410540 36 100.0 30 ATTATGACAA .................................... AATAATGTAGTTGGGTCAGTGGCTTCGGTA 1410606 36 100.0 30 GGCTTCGGTA .................................... AAAACTAGAAGCATTAGAAACCACTCTAAA 1410672 36 100.0 30 CCACTCTAAA .................................... TTCAAATAAGCACGATATAATGGAACAATT 1410738 36 100.0 30 TGGAACAATT .................................... AAAACTAGAAGCATTAGAAACCACTCTAAA 1410804 36 100.0 CCACTCTAAA .................................... CGACCCTTTA ========== ====== ====== ====== ========== ==================================== 13 36 30 GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.50,-8.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [61.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [222,9] Score: 0.18/0.18 # # Final direction: R [0.18,0.64 Confidence: MEDIUM] >NC_010729 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1813219 36 100.0 30 CAAGAATCAT .................................... CGTTACTTCGATGAAGACTACAACGAAACA 1813285 36 100.0 30 CAACGAAACA .................................... TAATAAGGTAAAATATAGTAATCCTTTGCC 1813351 36 100.0 30 ATCCTTTGCC .................................... GTAAAGAAGAAAAAAGATTAATTCCACTTG 1813417 36 100.0 30 ATTCCACTTG .................................... CTACTCGTGCTACACGAGTTAGTAAATGGA 1813483 36 100.0 AGTAAATGGA .................................... CTACCCCCATCGA ========== ====== ====== ====== ========== ==================================== 5 36 30 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-10.20,-7.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [62,211] Score: 0.18/0.18 # # Final direction: F [0.37,0.18 Confidence: MEDIUM] >NC_010729 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2181484 30 100.0 36 NNNNNNNNNN .............................. AAACGAAATGAAAAAGACAACAAACAGAAGACCCTC 2181550 30 100.0 36 NNNNNNNNNN .............................. GTGCCAGCTGCAGGGGGATGACATAGCCATTGACGA 2181616 30 100.0 36 NNNNNNNNNN .............................. GTGCCAGCTGCAGGGGGATGACATAGCCATTGACGA 2181682 30 100.0 36 NNNNNNNNNN .............................. TCCGCGCCGCGAGGTGGAGACCCTGCCGGAGGCGAA 2181748 30 100.0 37 NNNNNNNNNN .............................. CCTGAGAAAGAGGGGAGGGAGGAGCGATAGACGAAGT 2181815 30 100.0 36 NNNNNNNNNN .............................. CGAGAATCTATTGAGTAGCGAAGTCGTCACAAAGAT 2181881 30 100.0 36 NNNNNNNNNN .............................. AGCCATAGCTCTTCAATTTCAATTTCTTCTTTTAAT 2181947 30 100.0 36 NNNNNNNNNN .............................. CGAAAATAACAAAAATAGATATATTTATAAAAAAGA 2182013 30 100.0 34 NNNNNNNNNN .............................. ACTCTTATCATCTACTATCTCAAAAGCTCTTTTT 2182077 30 100.0 38 NNNNNNNNNN .............................. TCGCTATAACCCTATGTGATTCAGGAATCGGCTTGCTA 2182145 30 100.0 36 NNNNNNNNNN .............................. GAAACATTCGAGCCGTATTCAATTACGCCATCAATG 2182211 30 100.0 38 NNNNNNNNNN .............................. CACCCATTGTGCCGCCGTCCTGACCGAAAACTTCTTTA 2182279 30 100.0 38 NNNNNNNNNN .............................. TCGCTATAACCCTATGTGATTCAGGAATCGGCTTGCTA 2182347 30 100.0 36 NNNNNNNNNN .............................. GAAACATTCGAGCCGTATTCAATTACGCCATCAATG 2182413 30 100.0 38 NNNNNNNNNN .............................. CACCCATTGTGCCGCCGTCCTGACCGAAAACTTCTTTA 2182481 30 100.0 38 NNNNNNNNNN .............................. TCGCTATAACCCTATGTGATTCAGGAATCGGCTTGCTA 2182549 30 100.0 36 NNNNNNNNNN .............................. GAAACATTCGAGCCGTATTCAATTACGCCATCAATG 2182615 30 100.0 38 NNNNNNNNNN .............................. CACCCATTGTGCCGCCGTCCTGACCGAAAACTTCTTTA 2182683 30 100.0 36 NNNNNNNNNN .............................. ATTTCTTCATCTCGCGCTTGCTCAAAAGCGCGTTCA 2182749 30 100.0 34 NNNNNNNNNN .............................. TGCATCAAGTCACGAACTTTCTGCGAGATGGAAA 2182813 30 100.0 36 NNNNNNNNNN .............................. CCGTCTCGAAAAAATATCGGGACGTTTTTGTTTTCT 2182879 30 100.0 35 NNNNNNNNNN .............................. CTCCTTCACTTTGTCGACAATGTGCACTGTATTTG 2182944 30 100.0 36 NNNNNNNNNN .............................. AGGCGGAGTATCTCTTTGCCACCCAGTCCGCGCGCA 2183010 30 100.0 36 NNNNNNNNNN .............................. CGTAACCGCCTCGGTAGACCGCTCCGCACGGTCGTT 2183076 30 100.0 37 NNNNNNNNNN .............................. GTGCATTCCGGACAGCTTTCGCTTAAAAAGTTAGCGG 2183143 30 100.0 37 NNNNNNNNNN .............................. AAGAACGAACGCCTGCGCGATAAGCACCGCGAGCGTA 2183210 30 100.0 36 NNNNNNNNNN .............................. ATTTACCTGCAGACTTGTGCCCACCCACTTGATAGA 2183276 30 100.0 36 NNNNNNNNNN .............................. TGGTCACGGAGCGATACCATGAGTGTTTAGTAGATG 2183342 30 100.0 36 NNNNNNNNNN .............................. CGGAGGAGATCAGCTATGCGGATGATACCACCCGTG 2183408 30 100.0 36 NNNNNNNNNN .............................. TCAGAAAACTCGCGTCCATCTGATAGATGTACACGA 2183474 30 100.0 36 NNNNNNNNNN .............................. TAAACGATCGAGGCGCGGAGACCCTCCTTGCCAGTA 2183540 30 100.0 37 NNNNNNNNNN .............................. CCGTTCAGGAAAAAGTAACCGAGCTGAAGACCATGCT 2183607 30 100.0 35 NNNNNNNNNN .............................. AGGTGCTATCGCAGGACTGCAGGACATCCTCAATC 2183672 30 100.0 36 NNNNNNNNNN .............................. AGCCGCTCGACTTGACGCCATGCAAAAACAGATAGA 2183738 30 100.0 36 NNNNNNNNNN .............................. TCTGCGAGTTGTGAGAGGCAATAAACTGCTGGGAGC 2183804 30 100.0 35 NNNNNNNNNN .............................. ATTGCTGTTAATTCTGTCATCTCTTATTTCTTTTA 2183869 30 100.0 35 NNNNNNNNNN .............................. TCTATCTGCGTATAGCCCTCGCCGTCCACGCCCTG 2183934 30 100.0 37 NNNNNNNNNN .............................. GGGAAGCTGCTTTGCTCGCTGAGATAGCAGCACTTCA 2184001 30 100.0 36 NNNNNNNNNN .............................. TTTATTGACGCCACCCCGCCGACGAAAAAAAATCAT 2184067 30 100.0 36 NNNNNNNNNN .............................. TTTCGGTCTTTACGTTTGTCGCCACGGATACATGCT 2184133 30 100.0 37 NNNNNNNNNN .............................. ATTGTAAATAAATTACATGGCTATTGAAAAACAAATT 2184200 30 100.0 36 NNNNNNNNNN .............................. GATTGTACGACTTTGCTATAAAGTCTGAGTTATTAA 2184266 30 100.0 36 NNNNNNNNNN .............................. TATCAACAATCACCGTCATATGTGTAATATACTTGA 2184332 30 100.0 36 NNNNNNNNNN .............................. GGGCAGGCGTATTGCCCCACTTCTCCCCGAATGCAT 2184398 30 100.0 36 NNNNNNNNNN .............................. TGAGGAATCATATCAGTGTTTATTTTTTCATCGATT 2184464 30 100.0 36 NNNNNNNNNN .............................. TGGAAGTGGGTAGAAGAAAGCCCCAACGTGTTTAAG 2184530 30 100.0 36 NNNNNNNNNN .............................. CATGACAAAGAGACGGTTATCGGTAGAGGACAGGCA 2184596 30 100.0 35 NNNNNNNNNN .............................. CGCGTGGAAGGGGCATGTACACTTGTAGTTCGCCC 2184661 30 100.0 34 NNNNNNNNNN .............................. TGACAGGCCCTGCAGCGTGTGAGAGCGGAAATGC 2184725 30 100.0 37 NNNNNNNNNN .............................. ATTTTCAATCATGATATTTTATTTTTCCTGCAAACGC 2184792 30 100.0 36 NNNNNNNNNN .............................. TCGCATGTGGGAGCGCGGCGGTCTCTGCTTTACGAA 2184858 30 100.0 36 NNNNNNNNNN .............................. TCAGCGTGATGAGCGCTTGAGGCTCCTCCATCGAGT 2184924 30 100.0 36 NNNNNNNNNN .............................. AAGGATGATTTGGAAAATTTAGTAAGATAGTTGATA 2184990 30 100.0 37 NNNNNNNNNN .............................. TTCTTGGAGAAAGCGAAGACCATGAACCTAAGCGTCG 2185057 30 100.0 36 NNNNNNNNNN .............................. GGAAATATAGTTATTGTATCTACTAAAAGACATAGT 2185123 30 100.0 34 NNNNNNNNNN .............................. ACCCCATCTTGCAGAGTATATGCGAGCAAAATTT 2185187 30 100.0 34 NNNNNNNNNN .............................. TAGTTAGCACAGTTGCTACTATCGTAGTAGCTGT 2185251 30 100.0 35 NNNNNNNNNN .............................. AGATAAACTTTCTTCTCGAATTAAGAAAATCGAGA 2185316 30 100.0 36 NNNNNNNNNN .............................. CCGCGGCCATCGAGGCCACCGCCTCCGTCCTCCGCG 2185382 30 100.0 37 NNNNNNNNNN .............................. TATGAAAACAGAAAAGAACTTCTCAGCCCTGAGTTTG 2185449 30 100.0 37 NNNNNNNNNN .............................. CAAACTCAATGATTATCTGTCAAGAAGCAAGAAACGA 2185516 30 100.0 37 NNNNNNNNNN .............................. AGTAAAAATTACCCTAGATGCCGAAACGGACGGCCTT 2185583 30 100.0 36 NNNNNNNNNN .............................. CAGAATTTGCACGAACAGTATGATGTTCGTGTTCTT 2185649 30 100.0 36 NNNNNNNNNN .............................. AAGCGCGAGACAGGCCGAGCCGGCACAGCTTAGTGC 2185715 30 100.0 36 NNNNNNNNNN .............................. AAAACGGCGATAAAATAGCGTTCGAGATTTTCCGCA 2185781 30 100.0 37 NNNNNNNNNN .............................. TAGTTGTAGCGATTGTCTCAGTTGCATTACTCCTTAC 2185848 30 100.0 37 NNNNNNNNNN .............................. AAATAACGAGAAAAAGAATGCTTAAATTGTTCTTCGT 2185915 30 100.0 36 NNNNNNNNNN .............................. AGAAGAGGGTAAACTATTTGCTAATCTTGAATGCTT 2185981 30 100.0 36 NNNNNNNNNN .............................. TCTCAATATCTTTCATAGCTACTAAAAATTTACGAA 2186047 30 100.0 35 NNNNNNNNNN .............................. ATTGCTGTTAATTCTGTCATCTCTTATTTCTTTTA 2186112 30 100.0 35 NNNNNNNNNN .............................. TCTATCTGCGTATAGCCCTCGCCGTCCACGCCCTG 2186177 30 100.0 36 NNNNNNNNNN .............................. TGCCCCCTCACCCATCTAACCTCGAGCCGTTGAGCC 2186243 30 100.0 36 NNNNNNNNNN .............................. GATTACATAATGATAGACGACAGAGATTGTGCAGAA 2186309 30 100.0 35 NNNNNNNNNN .............................. GTACTGATAATTACGCTGCAAGGTCAGACGGTGAT 2186374 30 100.0 36 NNNNNNNNNN .............................. TTGCCAGGGCTTGCTGATGCGCGCGCTCCAGCTGCT 2186440 30 100.0 36 NNNNNNNNNN .............................. ACAGAACCAGCTCCGTCAAATCTCCCGCTTTTTGTC 2186506 30 100.0 36 NNNNNNNNNN .............................. TGCCCCCTCACCCATCTAATCTCGAGCCGCTGAGCC 2186572 30 100.0 36 NNNNNNNNNN .............................. TATTCATTCGCTCAAGCGAGGGCATCCTGCTGCAGC 2186638 30 100.0 36 NNNNNNNNNN .............................. GCTCGCGGAGGGAGAGGGTGCCGGTATCCTGCCTCC 2186704 30 100.0 36 NNNNNNNNNN .............................. AGAGTCTGTATGTGAAAGTGTAGTTCGAAACATTAT 2186770 30 100.0 34 NNNNNNNNNN .............................. AGAATACTTTGAAGTTGTATTCAATTACTTTGAA 2186834 30 100.0 36 NNNNNNNNNN .............................. CCGTTGTGACAGAGCTGCGCCGTCGTGGCTATGATG 2186900 30 100.0 36 NNNNNNNNNN .............................. TGAAAGCCCGAAGATAATCTACACGCAAGATTGTTA 2186966 30 100.0 35 NNNNNNNNNN .............................. CGTCATCAGGTGGATATTCTTACTGCTATCCACGA 2187031 30 100.0 36 NNNNNNNNNN .............................. TCGTCTGCGACGTATCGCAGCTCTGCCAGCTCCGCG 2187097 30 100.0 36 NNNNNNNNNN .............................. GCATCTTCGCAGGAAAGAAGAAGGCTCCGTCCTCGA 2187163 30 100.0 36 NNNNNNNNNN .............................. AACAGTCAAGGGGGAGCCGACCTCTCCGGCGGATTT 2187229 30 100.0 36 NNNNNNNNNN .............................. GCAGTGCGGCCGACAAGGCTAACCTCGCTCAGCTGA 2187295 30 100.0 36 NNNNNNNNNN .........T.................... AATCCATGTTCATGAGGAGAGGATACGAGTTCTATT 2187361 30 100.0 35 NNNNNNNNNN .............................. CCTTTTGCTATTGCAGCAAACATATACAATAATAA 2187426 30 100.0 36 NNNNNNNNNN .............................. ACTTCATGGATTTAGCGAGATACTCATTATAATTAA 2187492 30 100.0 36 NNNNNNNNNN .............................. TCTTCAAAGATAGTTGTTATCAAATATCGCGCTGAA 2187558 30 100.0 37 NNNNNNNNNN .............................. ATCTTCAAAGATAGTTGTTATCAAATATCGCGCTGAA 2187625 30 100.0 36 NNNNNNNNNN .............................. GCTCAAGCGTCCAAGAAAGTTCAAGAAATTGTACTA 2187691 30 100.0 37 NNNNNNNNNN .............................. TACTATGGTGTCTGCATTTGAGATACGCAAATAGCAA 2187758 30 100.0 36 NNNNNNNNNN .............................. CCTCAATATCTTTCATTGCGACGAGAAATTTGCGAA 2187824 30 100.0 36 NNNNNNNNNN .............................. AATCTATGATGATATAGAAGAAGACGACTTGTTGTT 2187890 30 100.0 36 NNNNNNNNNN .............................. ATTAATGATTTTCTGAAATAAAGAAGCAGTTGCATA 2187956 30 100.0 35 NNNNNNNNNN .............................. CTCAATATCTTTCATTGCGACGAGGAACTTGCGAA 2188021 30 100.0 36 NNNNNNNNNN .............................. CCCCGTGGTAACTCATACCACCGACTATTCCACCGT 2188087 30 100.0 36 NNNNNNNNNN .............................. TTTGAGTAATCATCGAATAATTATCGATTAATCATT 2188153 30 100.0 36 NNNNNNNNNN .............................. TTATATGCATCATATTCTTAAAGTATTTTATTTGAA 2188219 30 100.0 36 NNNNNNNNNN .............................. GACGAATACGGCGTTCATCATCGATAGTCGCGATGC 2188285 30 100.0 36 NNNNNNNNNN .............................. CGGGCGGCCAACCGGTCACAACAAGAATAGACCGAT 2188351 30 100.0 35 NNNNNNNNNN .............................. TTCCTTCCAGTCGCAGCTTAAGATACTGCGACTAC 2188416 30 100.0 36 NNNNNNNNNN .............................. AATTTTCATCAGAGCATAAAAAAGGGCAAACTTTTT 2188482 30 100.0 35 NNNNNNNNNN .............................. GATACGAGCACCAAGGCTGCGATACCGATTGCGTA 2188547 30 100.0 36 NNNNNNNNNN .............................. CCTCGAGCAGATCTTCCTGCTCTTTGATGAGTGAGG 2188613 30 100.0 35 NNNNNNNNNN .............................. GCAGGTTGATTATAATGTTGAAGATGCTTTAAGGG 2188678 30 100.0 36 NNNNNNNNNN .............................. CTCGTATCGACTTTCAAGCAGGCTGGAGTGCAGCCT 2188744 30 100.0 37 NNNNNNNNNN .............................. AATATGAGATCGGAAACAATTATAGTTGCGTCGATAT 2188811 30 100.0 37 NNNNNNNNNN .............................. TCACAATAACCGACAAAATGTCTCGCGTAACGTACAA 2188878 30 100.0 35 NNNNNNNNNN .............................. GTCGCCTGTTTTCTTGAACTCCTCACTGATTCGTA 2188943 30 100.0 35 NNNNNNNNNN .............................. GATGGTGTCGACATCATACGACAATAGATCGTCGA 2189008 30 100.0 35 NNNNNNNNNN .............................. GATGGTGTCGACATCATACGACAATAGATCGTCGA 2189073 30 100.0 36 NNNNNNNNNN .............................. AATATTTTTTCAAAAATTGTAAAACTTATTAAGTCA 2189139 30 100.0 36 NNNNNNNNNN .............................. AAGTTGCTGATTGTCTTAGAATGAAAGGTTATGCTC 2189205 30 100.0 35 NNNNNNNNNN .............................. ATAATATTACATAATGGCACACTGATGGTAAACTT 2189270 30 100.0 34 NNNNNNNNNN .............................. CATGATGTACAAATATATCATGATCGTATACTAC 2189334 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 120 30 35 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.90,-0.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [115,248] Score: 0.18/0.18 # # Final direction: F [4.91,0.18 Confidence: HIGH] >NC_010730 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 1561790 31 100.0 35 AAAAGTTGAC ............................... CATCAAAAGCTACAATGACATATTCACCAATATCT 1561856 31 100.0 36 ACCAATATCT ............................... GCTTGATACATCGCCCGCATAAACTACGTTTGTGCC 1561923 31 96.8 37 CGTTTGTGCC T.............................. TCTTTATTTTCTCAACAATTTCTTCATAATCTTCTCT 1561991 31 100.0 AATCTTCTCT ............................... TCCAAATCACT ========== ====== ====== ====== ========== =============================== 4 31 36 GGGTTACATCTGAACCGTGTGGGTTATAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.84%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.40,-2.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [78.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1447,168] Score: 0.18/0.18 # # Final direction: F [1.23,0 Confidence: HIGH] >NC_010730 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 26281 29 100.0 36 NNNNNNNNNN T.AA......................... AGAATTAAGACTTGGTCTGATGAGAATTTCTATGAA 26346 29 100.0 36 NNNNNNNNNN ............................. AGAATTAAGACTTGGTCTGATGAGAATTTCTATGAA 26411 29 100.0 36 NNNNNNNNNN ............................. AGAATTAAGACTTGGTCTGATGAGAATTTCTATGAA 26476 29 100.0 36 NNNNNNNNNN ............................. TGATATTGATAAATTTGTATCTAATCTTAAGCAAGA 26541 29 100.0 36 NNNNNNNNNN ............................. GGTTCCTGTTAAATTCTTTATATAAAAGATTTTAGC 26606 29 100.0 36 NNNNNNNNNN ............................. TAAAATTGAATATGAAAATTAAAAATTGCATAAAAA 26671 29 100.0 36 NNNNNNNNNN ............................. GGTTCCTGTTAAATTCTTTATATAAAAGATTTTAGC 26736 29 100.0 38 NNNNNNNNNN ............................. TTGGAGTAGTTCTTGTCGTTATAATCTTTTTACAGAGA 26803 29 100.0 36 NNNNNNNNNN ............................. CCCAAAGAGCACAAAAAGTTTTTGCAGTTTTTGCAG 26868 29 100.0 37 NNNNNNNNNN ............................. TCGGCTATGATTTCTAAAGCAGAGACTAAAAGAGCAA 26934 29 100.0 37 NNNNNNNNNN ............................. TTGTTGGAACTGCACCAGTTCATACTACTATTCCTAC 27000 29 100.0 36 NNNNNNNNNN ............................. TGACCCGACTAAAGTCCAAGCATCGGATATAATCGG 27065 29 100.0 35 NNNNNNNNNN ............................. TTATGGCTTTTTATGATTGTTTTATGATTGCATTA 27129 29 100.0 37 NNNNNNNNNN ............................. ATATAAAATTTATAATGTAAAAAATTGAATAAGAAAA 27195 29 100.0 36 NNNNNNNNNN ............................. TTGCTTTCAAAAGATAAAAGAGATTTTGTAGATTTA 27260 29 100.0 36 NNNNNNNNNN ............................. CTAATAATAGACTAACAGTTGCTAATGCTTATGATG 27325 29 100.0 36 NNNNNNNNNN ............................. CTAATAATAGACTAACAGTTGCTAATGCTTATGATG 27390 29 100.0 36 NNNNNNNNNN ............................. CTAATAATAGACTAACAGTTGCTAATGCTTATGATG 27455 29 100.0 36 NNNNNNNNNN ............................. AATAAAATTTATATGGTAAAATAATTTAAAATAAAA 27520 29 100.0 37 NNNNNNNNNN ............................. TTAATTTTTTATGGTTTTTATTATGATTACATTTTTA 27586 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 21 29 36 CTTTATAACCCACACGGTTCAGATGTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.62%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.10,-3.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [287,656] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_010730 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 693082 28 100.0 37 NNNNNNNNNN ............................ AGTGTAAGAAAGGTATTGTTTTTAAATGTTGGAATGT 693147 28 100.0 37 NNNNNNNNNN ............................ ACTCAAGTAAAGTCTTCATAGCTAAAACCTCCTATAA 693212 28 100.0 38 NNNNNNNNNN ............................ AGTCTTTTTCATCTTTTCTTCTAACTTTAGCAACCTGT 693278 28 100.0 37 NNNNNNNNNN ............................ AATACTTGATAGCGTAGGATTGATTAGAGAGTTGTTA 693343 28 100.0 38 NNNNNNNNNN ............................ ATTTAAAAAATTTGATGTATATTATTATTAACAATATA 693409 28 100.0 37 NNNNNNNNNN ............................ ATCTTTTTAATAGGTGGTTTTCTTCTTGGCTCTATCT 693474 28 100.0 37 NNNNNNNNNN ............................ ATAGCAAAAGCTAAGATAGTATTCATTGTTAAAGCCG 693539 28 100.0 38 NNNNNNNNNN ............................ ACTTTTAACTCATATATAGAATTATTTTTAAATATTTC 693605 28 100.0 37 NNNNNNNNNN ............................ AGTTTTTAAATTAACAAACTCTTCAGTTGAAAGCATG 693670 28 100.0 38 NNNNNNNNNN ............................ ATTGAAACATACAACAGAGAAGAACATAAATTTGAGCA 693736 28 100.0 37 NNNNNNNNNN ............................ ACTCAAGTAAAGTCTTCATAGCTAAAACCTCCTATAA 693801 28 100.0 38 NNNNNNNNNN ............................ AGTCTTTTTCATCTTTTCTTCTAACTTTAGCAACCTGT 693867 28 100.0 37 NNNNNNNNNN ............................ GTAATTTTAATCTTTCTTATGTATTAATTTTTAGTTT 693932 28 100.0 38 NNNNNNNNNN ............................ GGTTTAAAGTTGTTGGCTGGAATATTGAAATTAGCACT 693998 28 100.0 37 NNNNNNNNNN ............................ GTACTTTTTACTCATCACACTTCACTCATCTATTCAC 694063 28 100.0 37 NNNNNNNNNN ............................ GTTGGTCTTCCTTTTGAAGTAGGTTGACCCATTAAAA 694128 28 100.0 38 NNNNNNNNNN ............................ GGCAGTATTATGAGATCGGTGTTATGTTTATCTATTTA 694194 28 100.0 1 NNNNNNNNNN .........................GT. NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 18 28 37 GTTACATCTGAACCGTGTGGGTTATAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.71%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.40,-2.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [800,365] Score: 0.18/0.18 # # Final direction: F [1.23,0 Confidence: HIGH] >NC_010794 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 825725 35 97.1 33 GCTTCGTTTT ..............................C.... CAAAGGCCTGGTAAAAGTAAAAGAAGTAGAAGA 825793 35 100.0 32 AAGTAGAAGA ................................... TAGAAAAGCTAAAGAAAAATGGGGAACAATTT 825860 35 100.0 GGAACAATTT ................................... TGTATCCCTC ========== ====== ====== ====== ========== =================================== 3 35 32 GTTTCAAGCCCAGTGCACTGGGATATATCATCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.29%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.70,-7.70] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [114,339] Score: 0.18/0.18 # # Final direction: R [0,0.86 Confidence: HIGH] >NC_010794 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 826621 36 100.0 31 NNNNNNNNNN AGCCT.G..T...............T..T....... CGAGCAACACTCCATTGGTTCGCCTCCGTGG 826688 36 100.0 32 NNNNNNNNNN .........................T.......... TCTTGCTCCGGATGAAGAGACCACTTTTTCGG 826756 36 100.0 30 NNNNNNNNNN .................................... TTTATCCCTGAGGAAGTGGACTCCGTGGTA 826822 36 100.0 32 NNNNNNNNNN ...................................A AATATATGACGATGAATGCAAATGCAAATGGG 826890 36 100.0 30 NNNNNNNNNN .................................... TTTATAGCCTAGTCCCAACCGGAGCTCTCC 826956 36 100.0 32 NNNNNNNNNN ...................................A AATATATGACGATGAATGCAAATGCAAATGGG 827024 36 100.0 30 NNNNNNNNNN .................................... TTTATAGCCTAGTCCCAACCGGAGCTCTCC 827090 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 8 36 31 GTTTCAAGCCCAGTGCACTGGGATACATCATCAACT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.70,-7.70] Score: 0/0.37 # Array degeneracy analysis suggestion: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [40,136] Score: 0.18/0.18 # # Final direction: R [0,0.86 Confidence: HIGH] >NC_010803 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 1009935 35 100.0 35 CAGAGGTACT ................................... TTGCAGGTCTTCCGCCTGCGAGCTGAATCATGTCC 1010005 35 100.0 35 AATCATGTCC ................................... GTTCTTCTTCGATGCGCTGGCGTTCTGCCTCTTCA 1010075 35 100.0 36 TGCCTCTTCA ................................... TCATATTGCACTTTCGGCATTGCCATCCTCCACTTT 1010146 35 100.0 36 CCTCCACTTT ................................... AACATCCCTATTGTTTTATCGTACAACTCGTCACTT 1010217 35 100.0 40 CTCGTCACTT ................................... TCGGAGACATCCTTGTAAGCCTTCACAACATCATTAAAGT 1010292 35 100.0 37 TCATTAAAGT ................................... TTATCTCGCGCCGGACGATGTTGTCACCGCAGTACAC 1010364 35 100.0 38 CGCAGTACAC ................................... TAGCCGTCGCCTGCCACTATGCTTTCCATACAGGCACC 1010437 35 100.0 39 TACAGGCACC ................................... TATTGTGCAACCCAGATTTCGACACGGCGATTTCGCTCC 1010511 35 100.0 39 ATTTCGCTCC ................................... AATCTTCAAACTTAATTATTGTTTCTGTTTTATTATATA 1010585 35 100.0 42 TTATTATATA ................................... ATGCACGTCTTACTCATACTTCTCCCTCCGTTTTGCTCAATT 1010662 35 100.0 38 TTGCTCAATT ................................... CTTCTTCCCGGTCGCAAGGCGTGAGCACCGCCGTCACC 1010735 35 100.0 40 CGCCGTCACC ................................... TAATCACACTTCCTGACCGTAGCAGCCAGCGCCCCGTCTG 1010810 35 100.0 36 GCCCCGTCTG ................................... TTAACTCGATAGCGTATGCAATGGCTACGCAAGGGA 1010881 35 100.0 38 ACGCAAGGGA ................................... TTCCAAATCTCTCATGTTAGCTATGTCCTTATAATCAA 1010954 35 100.0 40 TTATAATCAA ................................... CTCAACCCCATGTAAAAAAGACATAAGACATCTATTTAAA 1011029 35 100.0 40 TCTATTTAAA ................................... GCCACCACTTCAGCCTTATCAGTAATTCCCGTAAGATAAA 1011104 35 100.0 39 GTAAGATAAA ................................... TACAGGTGGTACACGCCGTCTTTGCGGAGCACTCCCCCG 1011178 35 100.0 36 CACTCCCCCG ................................... AACAAATGGAGCTGGGTCGACAACCCGTAGTGCAGC 1011249 35 100.0 38 GTAGTGCAGC ................................... TAAGCGAATAAACCGCATATAAACCCGCGACCAGCAGG 1011322 35 100.0 39 GACCAGCAGG ................................... TTTGGTTCCGGTCTGGTGGTAGCCCATGTATTTGATTGC 1011396 35 100.0 37 ATTTGATTGC ................................... TTGCGTCGAAACCTTGTTTCGAAAGTTTTCTCTGAAA 1011468 35 100.0 TTCTCTGAAA ................................... TTGATTTAAG ========== ====== ====== ====== ========== =================================== 22 35 38 CTTTATATCTAATTGCACTCATTGAGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [43.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [252,841] Score: 0.18/0.18 # # Final direction: F [4.5,0.45 Confidence: HIGH] >NC_010803 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 1011541 35 100.0 39 TTGCCCCCCG ................................... TTTCCATTTCCGAAAGTATTTCTTCAGCTTTTTCAAGAT 1011615 35 100.0 37 TTTTCAAGAT ................................... CTTTTGGCTGTTAATGATGCGGTGGGTCTTGCCACAG 1011687 35 100.0 39 CTTGCCACAG ................................... CCACCTCTCCCTCGATGCTTACTGCATCACGAGGCGAAT 1011761 35 100.0 CGAGGCGAAT ................................... AACCGTTTGATGCTGCTGCAATCGTCATGCCATCACGGAGAACA ========== ====== ====== ====== ========== =================================== 4 35 38 CTTTATATCTAATTGCACTCATTGAGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [48.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1858,548] Score: 0.18/0.18 # # Final direction: F [4.68,0.27 Confidence: HIGH] >NC_010803 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================== ====== 1015192 21 100.0 54 CAGAGGTACT ..................... TTGAGGATTGAAACCTGCCCTGTATTGTCTCTTCGTCCGGATCGTTGCCGGGTT 1015267 21 100.0 51 TTGCCGGGTT ..................... TTGAGGATTGAAACTGTCGATGACGCTATCCATCCTGCCGTTCCATTACTG 1015339 21 100.0 51 TCCATTACTG ..................... TTGAGGATTGAAACTCTAACTATAACGAAGCCGGTCGCCAACGTTACACCG 1015411 21 100.0 50 CGTTACACCG ..................... TTGAGGATTGAAACTTAATAGCCCTTTTTCTTCCTTCTTTTTTAATAAAA 1015482 21 100.0 51 TTTAATAAAA ..................... TTGAGGATTGAAACTAAAGTTAGGTTTTGATTGTTTACATATACCATGATA 1015554 21 100.0 54 TACCATGATA ..................... TTGAGGATTGAAACAAAGCCGCAACAGGATTTGCTGACATCAACATAGCTGCTG 1015629 21 100.0 56 ATAGCTGCTG ..................... CTGAGGATTGAAACTCCTTCGAGAAGCGCTCCGGTTTGCTTGAAAATATCCAGCGC 1015706 21 100.0 54 TATCCAGCGC ..................... CTGAGGATTGAAACTGTGTTTAGTGATTTTTGAAGATGGAAATTGTAAAAAACT 1015781 21 100.0 51 GTAAAAAACT ..................... CTGAGGATTGAAACATCCCGCACCGCCGACCTGCGGTTAAACTCCTCATCA 1015853 21 100.0 62 CTCCTCATCA ..................... CTGAGGATTGAAACCTTTCCCGTAGTAGAGAGCGCGATGCTGATATGCCGAATGCACAGAGA 1015936 21 100.0 50 TGCACAGAGA ..................... CTGAGGATTGAAACTCAACGAATCTGTCCCTTTCCTGCTGCACCTGCCGA 1016007 21 100.0 49 CACCTGCCGA ..................... CCGAGGATTGAAACGCAGTGGACTTTATGGTGTATTCCATCCAGCCGAA 1016077 21 100.0 53 TCCAGCCGAA ..................... CCGAGGATTGAAACGTCCGTGCTCCAGCCTCCGGCAGCCTGATTTTTCCAGTC 1016151 21 100.0 TTTTCCAGTC ..................... CCGAGGATTGA ========== ====== ====== ====== ========== ===================== 14 21 52 CTTTATATCTAATTGCACTCA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:71.43%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [43.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [252,1522] Score: 0.18/0.18 # # Final direction: R [0,0.45 Confidence: MEDIUM] >NC_010803 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 499776 30 100.0 37 TGAAGCGCGG .............................. CAGTGATAATATCTAATTCCTTCGCCGTATTCTTTTC 499843 30 100.0 36 TATTCTTTTC .............................. ACGTTCTTGATATGCGAATACGTTACCATCGTTGGC 499909 30 100.0 37 CATCGTTGGC .............................. CAGGGCAACCTTTCCGCAATCGGTACATTTACCGCTC 499976 30 100.0 37 TTTACCGCTC .............................. TAAAAACGTAACCTCTCCGATGCAGGTTATGCGAGGA 500043 30 100.0 35 TATGCGAGGA .............................. CTATCTTCACTGTGGTGAATACGGTGATAAAACTG 500108 30 100.0 36 GATAAAACTG .............................. TACGGATGGTACAACATCTTTCGGTCTGGAATCTAA 500174 30 100.0 37 TGGAATCTAA .............................. TTAAAGAACGAACAGCTCGCGTTATGCCTCTCTACTC 500241 30 100.0 39 CTCTCTACTC .............................. ACGCTAGAATTAGTAATCGGCTGAGTACCTCCTGTATTA 500310 30 100.0 36 TCCTGTATTA .............................. AGATTTGTAGTTCCCTCGGTGAGACCAAGAGCTTTA 500376 30 100.0 36 AAGAGCTTTA .............................. TTACCGCCCATAGCCGACAGTACTGGATTTAGACCT 500442 30 100.0 36 ATTTAGACCT .............................. TATAAAGAACGCCTTAGTAATGTCTTATTAGGTGCT 500508 30 100.0 36 ATTAGGTGCT .............................. TAGCAATTGCTAAAGTATTTGAAGCCTCTTGTAAGG 500574 30 100.0 35 TCTTGTAAGG .............................. TGTAATCGTTCCCGGCAAGCATTGCCTTTACACCG 500639 30 100.0 35 CTTTACACCG .............................. GTCGTTTCGGGTGAGTTCAGTGATCTCCTCGACCC 500704 30 100.0 36 TCCTCGACCC .............................. GAGACCGCAAACATCAGCAGCATGTAGGCTGGATTG 500770 30 100.0 37 GGCTGGATTG .............................. ATATAGGCTTGATCGGTGTTGCAAGCCGCCCAAATCC 500837 30 100.0 36 GCCCAAATCC .............................. CAGGGTATCTGAATCGGCATATCGGAATAAGCTTCT 500903 30 100.0 36 ATAAGCTTCT .............................. TTATTGATTCAACAACCTCATCAACCTTTTCCGGAG 500969 30 100.0 35 TTTTCCGGAG .............................. GCGACATCGCAACGCAGGCCCTTGTCGACGGGCTC 501034 30 100.0 37 CGACGGGCTC .............................. TCAAGAACAACAGCGTTACCGGAGACAGATCGTGTGT 501101 30 100.0 35 GATCGTGTGT .............................. CAGTGCGGGCATGGCACAAAGTTCCGGCGCTGGTC 501166 30 100.0 36 GGCGCTGGTC .............................. TTGAGTAGGCCTCCGCGATATCGAGCGTCGGGAGTA 501232 30 100.0 35 GTCGGGAGTA .............................. TTGCACTCCGTGACGGGTAAGCCCGTCTGATTCCG 501297 30 100.0 36 TCTGATTCCG .............................. TTGAAAGCTGATCCGCATAGTCTGCGAGCTGTGATG 501363 30 100.0 38 AGCTGTGATG .............................. CTTGCTATTTGTTGCAGGGTTGGCAAGGTTCGTCACAG 501431 30 100.0 37 TTCGTCACAG .............................. TCGTTCATCTCATGCACCAGCCCCGCAAGCGAAACCC 501498 30 100.0 37 AGCGAAACCC .............................. GCATTACAGCAACACGTCCCTGTCTGTCTATTGCGGA 501565 30 100.0 36 CTATTGCGGA .............................. TTAAGTTGCGTCCTTCCGCCTGAGCCGTCTTGATGA 501631 30 100.0 37 GTCTTGATGA .............................. CATTGAGAGCATTGACGCACACGTACGCGGCATTCAG 501698 30 100.0 38 CGGCATTCAG .............................. CAGCAATCGTCGATAAGCGAGTGATGATCTTACTGTTC 501766 30 100.0 36 CTTACTGTTC .............................. ACAGATTCGCCGAGTCCAGCGCAGCAAGCGCCGCCT 501832 30 100.0 37 AGCGCCGCCT .............................. CCCGGAAGGCCAAGTCCATCCAGATACGCCTGTTCAA 501899 30 100.0 37 GCCTGTTCAA .............................. TGAGCTTGCTCAAACGCTCGGCATCGCCGTCATGGTG 501966 30 100.0 36 CGTCATGGTG .............................. GGATGAGCCATCGATGTTTCCCGATACGCATTCCGA 502032 30 100.0 35 CGCATTCCGA .............................. GCGCATCAACACCGCCCTTAAAGAGAGCCTCACCG 502097 30 100.0 37 AGCCTCACCG .............................. GCTGCAGGAAGTCAAAACAAAATTCCCGTTCTGGGAA 502164 30 100.0 37 GTTCTGGGAA .............................. GTTTTTCGAGTGGAAGATAAGCCAGGGGAGGACTGAA 502231 30 100.0 37 GAGGACTGAA .............................. ATTCGCTCCGCATGTCTGATGACGCTCCGGTAAATCT 502298 30 100.0 38 CGGTAAATCT .............................. AAAAGCGTATTCCCGACAATGGCGATTTTCCCTTCCGA 502366 30 100.0 38 TCCCTTCCGA .............................. GGGTAGCTATCTATTATTTCGTCAATGAGCCATAGCGT 502434 30 100.0 38 GCCATAGCGT .............................. TTCTTCCACGGAATAGCGTTGTAGCCACCCTTTCGCAA 502502 30 100.0 37 CCTTTCGCAA .............................. TTGCGGAACTGCGCCGCCGTGGCGTCTGTGTCCTCTA 502569 30 100.0 37 GTGTCCTCTA .............................. TGGAGTAACGAGAAATGCCTCAATCGTCATGATTCCC 502636 30 100.0 36 CATGATTCCC .............................. GCATGCGTACCAAGTCCAACTCTGCAAGCAAACGAA 502702 30 100.0 36 AGCAAACGAA .............................. GCATCAACGGGGAGCAGACAGTGAAGAGGTTAAACG 502768 30 100.0 37 AGGTTAAACG .............................. CTCGTACTTCTCGACTATCGCAAGCTGCTCTCTGCAT 502835 30 100.0 36 CTCTCTGCAT .............................. CGACAAAGCGTGGAATCAGACCATTGAGGATCATGT 502901 30 100.0 38 AGGATCATGT .............................. CAATCAAACATGCAAGTAATTAATAACATCCTGTACAG 502969 30 100.0 37 TCCTGTACAG .............................. AATTAAAGTTCACAAAAGAGCTGCTGCGCTACTTCAA 503036 30 100.0 36 GCTACTTCAA .............................. CAGTGCAGGAGGTCATTAATCCTTACATTGTGGTTA 503102 30 100.0 37 ATTGTGGTTA .............................. GTATTTAATGCCACTGAGGAACTGCATGGTATTCCGT 503169 30 100.0 38 GGTATTCCGT .............................. TAATCATGTTATAGCAAATGTTGACGGTTTGCAAGATG 503237 30 100.0 37 TTGCAAGATG .............................. TCTGTATCAATCCCCATTGCATGCTTTCGTGCCAGCC 503304 30 100.0 37 CGTGCCAGCC .............................. AGGCTTATTTGCTGCGGGCGGAACGAAACGCTCTTGA 503371 30 100.0 38 ACGCTCTTGA .............................. GCGTTTTTGATGTTCGAGGCAATATGGTGCATATCGAA 503439 30 100.0 38 GCATATCGAA .............................. TGTAAGCGCATTGTCGACGCGGTTCATGAGCATCCCGG 503507 30 100.0 36 AGCATCCCGG .............................. TCCATCCGGAGTTTTCCATTTCTTTGCCTTCGGATT 503573 30 100.0 36 CCTTCGGATT .............................. TAAGAGGATCAGCGCCCATGCGCTGAGCCATATTCA 503639 30 100.0 35 GCCATATTCA .............................. TCGGGTGTCACCCTCACAGCTACTTGAGCCAGCTT 503704 30 100.0 36 GAGCCAGCTT .............................. GCAGCGTAAGAGGTCGTCGCCGACCACTCCGCGTAG 503770 30 100.0 36 CTCCGCGTAG .............................. GTGTCAGTCGTGCCCATTACATCAAGTTTCGTGGGC 503836 30 100.0 38 TTTCGTGGGC .............................. GTTGTCGTCGGTAGAGTGATCTCTGTACCGGACGCATC 503904 30 100.0 37 CGGACGCATC .............................. ATCTCAAAAACTGATATAGTCGCTGCAGCATCAGCAC 503971 30 100.0 35 GCATCAGCAC .............................. CAAAAGGATTCTATCTCGGATGCGGAGGGAGTTCC 504036 30 100.0 36 AGGGAGTTCC .............................. GCGTTCATGTTTTTAAGAACAGCACCTTCATAACCT 504102 30 100.0 41 TTCATAACCT .............................. TACTCTTGCGTTATCACCGTAAACGCCACCGTTCGGTATTG 504173 30 100.0 37 TTCGGTATTG .............................. TTTTTGAACAGTCTTTTTACTTCGCTTCCGAAGCGAT 504240 30 100.0 37 CCGAAGCGAT .............................. ACGTCTGAGGATTTTCGTAACCCATAATCGTGCTTTG 504307 30 100.0 39 TCGTGCTTTG .............................. TCGCAACAAGCTGCTTGCGGAAAGCGGTGCTGAACTCCG 504376 30 100.0 37 CTGAACTCCG .............................. GTCGATTGAGCCGTTATGCTCGATTCCGTCCAGAAGG 504443 30 100.0 39 GTCCAGAAGG .............................. AGCTCTTGAATCTGGTCTTTAAGCAGCTTGTGTACAGAG 504512 30 100.0 38 GTGTACAGAG .............................. GCCGAAAGGCCCGACTCAGCAGAAATGCTACGAAATGG 504580 30 100.0 36 TACGAAATGG .............................. TGCAAGCGCCTCCTGCTCGTTGCCGCTGCCGCTGAA 504646 30 100.0 35 TGCCGCTGAA .............................. CCGAAAGTGGCGGAGAAGGACATGAAGGCCATGAA 504711 30 100.0 36 AGGCCATGAA .............................. TCCGACAGCGGGCCTCCACCCTGCGACAAACCAGTT 504777 30 100.0 36 CAAACCAGTT .............................. TTCGCTATCGATCGTGGAATATCCCTCACGATCGGG 504843 30 100.0 36 CACGATCGGG .............................. TCCGAAGCATCACGCTGTCCGGATCGGCGAACGTTG 504909 30 100.0 41 GCGAACGTTG .............................. TTACCTATTTCGGTAGGTATCTCGGTTTCCGGATCGTTCTT 504980 30 100.0 37 GATCGTTCTT .............................. TAAGTGTTGGCGCGGAATTGTTTTATTTAAAAAGATC 505047 30 100.0 36 TAAAAAGATC .............................. AGAGAATATATATTGAATTTGTGAGTCAAGTCAAAC 505113 30 100.0 35 CAAGTCAAAC .............................. CCGGATTAATGTTTATAACCGATGAACCACCGCCG 505178 30 100.0 37 ACCACCGCCG .............................. TATACCGGAGACGTAGGGAGATGTATGTACGGTGCAA 505245 30 100.0 36 TACGGTGCAA .............................. AAAACACCCGCCTACGCAGGAATCCACGACACCCTG 505311 30 100.0 37 CGACACCCTG .............................. TCGCAGCTGTCATATCGAGATAGGCGTGGCCTGTCTC 505378 30 100.0 37 GGCCTGTCTC .............................. GTCTGGCCCGCGCCGTTCACCTCTGCCGCTGAGCCAC 505445 30 96.7 37 GCTGAGCCAC ..........T................... AAATAAACAAGCGCTATCGCCAGTTTTTTTTAAACCA 505512 30 100.0 37 TTTTAAACCA .............................. TAGTAAAAATTTGATGGGTTCGGGTACGCCAGATGCA 505579 30 100.0 37 GCCAGATGCA .............................. TCGAAGGCCGCAGGCAGCTCTTCAAAGCCCTGCCCCG 505646 30 100.0 37 CCCTGCCCCG .............................. TCAAGAATATGTGAACGATACAATTTCGTTCCTTTTC 505713 30 100.0 39 GTTCCTTTTC .............................. CTTGTACTGCGTAACATAGCCGTAGTAGGCTTTGGAGTT 505782 30 100.0 36 CTTTGGAGTT .............................. GATAGAGGTGTTGTCGCTTCCGCTTCCGCCTGCTTT 505848 30 100.0 38 CGCCTGCTTT .............................. AACACTGGCTGTAATCGGTCAGATACCCCGCTGTCCCG 505916 30 100.0 36 CGCTGTCCCG .............................. TCAGCAAATACGCGGCAAAACGCCGAGACATCACCG 505982 30 100.0 37 GACATCACCG .............................. GCATGCGCAGCTGGGGAGCCGTAGCCATCAGCACCGA 506049 30 100.0 36 TCAGCACCGA .............................. ATGATCAAGACCGGAGAGCACAAGGTTACCAAGATG 506115 30 100.0 36 TACCAAGATG .............................. TAAAAGTAGAAGTAGAAGTAGAAGTAGAAGTAAATG 506181 30 100.0 36 GAAGTAAATG .............................. GATATTTAGAGTTGCAGATACTGTCGCCCCATCTCC 506247 30 100.0 36 CCCCATCTCC .............................. GAAAAGAACACCGTTACTGGCAGCGCATGTGCAATT 506313 30 100.0 36 ATGTGCAATT .............................. TGAGCTACAAGCATCCTGATCAGCCTACAAGCACTC 506379 30 100.0 37 ACAAGCACTC .............................. GACACGGTTATACATGAAAGGATCGGCACGTAGCTGG 506446 30 100.0 36 ACGTAGCTGG .............................. GCAAATCATTGCAAGCTGTGAGGACAGCATCGATCT 506512 30 100.0 38 GCATCGATCT .............................. CTTATCGTCACCATGCAATTCTTTATGATTTCTTTTCT 506580 30 100.0 36 TTTCTTTTCT .............................. GCGATAGACGCCTGTACCTGTATTTCGAGTATCTTC 506646 30 100.0 39 GAGTATCTTC .............................. GGTGAATTGCCGCCAGTAGCATTTTCAGAAATCGTACAA 506715 30 100.0 36 AATCGTACAA .............................. GCGATAGACGCCTGTACCTGTATTTCGAGTATCTTT 506781 30 100.0 36 GAGTATCTTT .............................. AAAGCCCTGCAGGGATACCTTCCCGAAACGTCCTGA 506847 30 100.0 36 AACGTCCTGA .............................. CCGTAATGGCCGCGTTGTCTGCCGGCGCATTGCTTA 506913 30 100.0 36 GCATTGCTTA .............................. CGATGATTGATAAGGTTTATGTAGATGCTCAACAAG 506979 30 100.0 38 GCTCAACAAG .............................. TTGTGCCGCATATCGTTTTACCGACTCCAGCAAAACGT 507047 30 100.0 36 AGCAAAACGT .............................. AAATATTCCGTACCCCTCAAGGCCGAGCTGATCCAT 507113 30 100.0 38 GCTGATCCAT .............................. ATGCAAGACATCTCTTGATCTCGTTCGTTTATTCGCTC 507181 30 100.0 35 TTATTCGCTC .............................. ACTGATTTTTCGATCTCGGCCATAGGCGTCTTGAA 507246 30 100.0 37 GCGTCTTGAA .............................. ACCGTACCATAGCCACAACAGGCTTCGACACCAGCGC 507313 30 100.0 37 ACACCAGCGC .............................. TGAACCAGCTCATCCGCTGGATCCTCGAACTCAACCG 507380 30 100.0 37 AACTCAACCG .............................. CCGGAAACTCTTTATCATATCTCCTCCATGTCAAGCA 507447 30 100.0 37 ATGTCAAGCA .............................. GCCTTCCTTGGCCACAAAAAGGTCAGGAAGTATCCAT 507514 30 100.0 36 AAGTATCCAT .............................. TAAAAGTAGAAGTAGAAGTAGAAGTAGAAGTAAATG 507580 30 100.0 37 GAAGTAAATG .............................. AGAATTTTCATTCGGTGTTTGAAATAAATCTCAACAA 507647 30 100.0 37 ATCTCAACAA .............................. GAGGACGGTTATTGTCCCTGTGACATCGATAGTGCTG 507714 30 100.0 36 GATAGTGCTG .............................. TCAGGCTCATGATGTAATCCATCGCCCATCATTTCG 507780 30 100.0 37 CATCATTTCG .............................. TCGATCCGGCATTCCCGGATGATGAAGCGCCGTTTTA 507847 30 100.0 38 CGCCGTTTTA .............................. CATGGACAGGTTGCAAGGTTGGACTGGTTTCCGGTTTG 507915 30 100.0 38 TTCCGGTTTG .............................. CCTTTTTGGCGGCTCCGAACGATCGAATCGGTTGCCCG 507983 30 96.7 CGGTTGCCCG ........A..................... TGAGGAAACA ========== ====== ====== ====== ========== ============================== 124 30 36 CTTATAATTGCACCAATATGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.20,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [235,422] Score: 0/0.18 # # Final direction: F [5.28,0 Confidence: HIGH] >NC_010805 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 2079734 20 100.0 34 NNNNNNNNNN .....A......AGC..CA. CGATAGCTCGGTCGCTTCGCTCTCGACCTCGACT 2079788 20 100.0 34 NNNNNNNNNN .................... GAATAGCTCGATCACGTCCCTGTCGACCTCGACT 2079842 20 100.0 22 NNNNNNNNNN .....G..T..G........ TAACAGTTCGATCGGTTCTCTG 2079884 20 100.0 34 NNNNNNNNNN .....G......AGT...A. CGATAGCTCAGTCGCTTCGCTGTCGACCTCGACT 2079938 20 100.0 34 NNNNNNNNNN .....T...........C.. TAACAGTTCGATCACTTCGCTGTCGACCTCGACG 2079992 20 100.0 22 NNNNNNNNNN .....G..T..G........ TAACAGTGCGATCGGTTCTCTG 2080034 20 100.0 34 NNNNNNNNNN .................... CAACAGCTCGATTACTTCGCTGTCGACGTCGACC 2080088 20 100.0 22 NNNNNNNNNN ...........G........ TAACAGCTCGATCGGATCGCTG 2080130 20 100.0 34 NNNNNNNNNN ..T.........AGC...A. CGACAGCTCGGTCGCTTCGCTGTCGAGCTCGACT 2080184 20 100.0 22 NNNNNNNNNN .................... AAACAGCTCGATCGGATCGCTG 2080226 20 100.0 34 NNNNNNNNNN ........T...AGC...A. CGACAGCTCGGTCGCGTCGCTGTCGACCTCGACT 2080280 20 100.0 34 NNNNNNNNNN ...........G..C..... TAACAGTTCGATCACGTCGCTGTCGACCTCGACG 2080334 20 100.0 34 NNNNNNNNNN .....T.....G..C..... GAACAGCTCGATCACGTCGTTGTCGACCTCGACT 2080388 20 100.0 22 NNNNNNNNNN ...........G........ AAACAGCTCGATCGGCTCTCTG 2080430 20 100.0 34 NNNNNNNNNN ............AGC...A. CGACAGCACGGTCGCTTCGCTGTCGACCTCGACG 2080484 20 100.0 34 NNNNNNNNNN .................... GAATAGCTCGATCACGTCCCTGTCGACCTCGACT 2080538 20 100.0 22 NNNNNNNNNN .....G..T..G........ TAACAGTTCGATCGGTTCTCTG 2080580 20 100.0 34 NNNNNNNNNN .................... GGACAGCTCTATCACGTCGTTGTCGACCTCGACT 2080634 20 100.0 22 NNNNNNNNNN ...........G........ AAACAGCTCGATCGCTTCTCTG 2080676 20 100.0 34 NNNNNNNNNN ..C................. AGACAGCTCTATCACGTCCTTGTCGACCTCGACC 2080730 20 100.0 34 NNNNNNNNNN ...........G..C..... GAACAGTTCGATCACGTCGCTGTCGACGTCGACG 2080784 20 100.0 22 NNNNNNNNNN ...........T........ CACGAGCTCAATCGGCTCTCTG 2080826 20 100.0 1 NNNNNNNNNN .....G.....TAGC...A. NNNNNNNNNN ========== ====== ====== ====== ========== ==================== 23 20 29 TCGACCGGCCTCTCGTCGGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [20-18] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [43.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [4581,2278] Score: 0.18/0.18 # # Final direction: R [0.45,0.78 Confidence: LOW] >NC_010814 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2638386 29 96.6 32 AGGGAACCTG .....................T....... AAACGCCGTCCTTAACAAAAGCGAGTCCCCGC 2638447 29 100.0 32 GAGTCCCCGC ............................. CGGGCATAGGCAGAGGAAGAAAGAGGAAGGAT 2638508 29 100.0 32 GAGGAAGGAT ............................. CAGAACTCTGACCATGTTTTGGGGTTCTTGTC 2638569 29 100.0 32 GGTTCTTGTC ............................. TTGCTCTGGAAGGTGTCGCGTTTCAGCTCAAA 2638630 29 100.0 32 TCAGCTCAAA ............................. GCCACGTTCTGCTGAAAGTTTGTTGGCCAGGT 2638691 29 100.0 32 TTGGCCAGGT ............................. ACAATGTTGATGTTTGCATAGAGCCGAATGGT 2638752 29 100.0 32 GCCGAATGGT ............................. CTCCCAGTAATGACCCTTGAAAGCCAACCATT 2638813 29 100.0 32 GCCAACCATT ............................. GTATCATCGCTCTCATGTTATTCTCCTTTTGT 2638874 29 96.6 32 CTCCTTTTGT T............................ TTTGCCGTCAAAAGCCATTTGCTCGATCAGGG 2638935 29 100.0 33 TCGATCAGGG ............................. GTTCGGTGCTGGTGCTTATTGCGCTTTCGGCTG 2638997 29 100.0 32 CTTTCGGCTG ............................. ATCACCTGCTGGCACCTGGCCAAAAACTACGG 2639058 29 96.6 32 AAAACTACGG ..............T.............. TGATTTTCGAATACAAAAACGTGCGGTCATAC 2639119 29 100.0 32 GCGGTCATAC ............................. CTCCAGAGGCGGCAGCAATGTTTGTGTCGCCT 2639180 29 100.0 32 TGTGTCGCCT ............................. ATCAACTGGCATGGTCCCGATAAACGGGAAAA 2639241 29 96.6 32 AACGGGAAAA ........A.................... GCAACAGCATTACCGGTGGCCTCGGCCAGCTG 2639302 29 100.0 32 CGGCCAGCTG ............................. TTTGACGTCTAATCCTCGTTAGGGTGCTATAT 2639363 29 100.0 32 GGTGCTATAT ............................. GCGCCGGATCCGGAGCGTAGCCGCTTGACCCG 2639424 29 100.0 32 GCTTGACCCG ............................. AGTACAACGGCTGCAAGGTCGGTAAATTCAGC 2639485 29 100.0 32 TAAATTCAGC ............................. CGGGCTGGCGGGATCTGTTGCAAAGGTGGTTT 2639546 29 100.0 32 AAGGTGGTTT ............................. GGTAGCGTTGGAAAAAGTCACCGTGATATCTT 2639607 29 100.0 32 GTGATATCTT ............................. TATGTAGCAAAATATTATTTTGATTTTGCAGA 2639668 29 100.0 32 ATTTTGCAGA ............................. AAGCTGGATGTAATAAAAGAAATGTTCGGAAC 2639729 29 100.0 32 TGTTCGGAAC ............................. TCCTCTATTTTTCGCACGCATTTACTTTGTCC 2639790 29 100.0 32 TACTTTGTCC ............................. CAGCAGATCAGGCGGGAGCCGCACACCGGTAA 2639851 29 100.0 32 ACACCGGTAA ............................. GGCCCATAGCCTTTTTCCATGCTGCCGGACGT 2639912 29 96.6 32 TGCCGGACGT A............................ CCCAACAGTGACTGGGGCAACGTCTACAATCG 2639973 29 100.0 32 TCTACAATCG ............................. GGTCTGCGCTCCGACTCTTGCCGCTGGTGTTT 2640034 29 100.0 32 GCTGGTGTTT ............................. TAACCGCAATACTGCGCCAGATCGGTATGTCG 2640095 29 100.0 32 CGGTATGTCG ............................. TTGATCCGGATCCACTCTCCAGTGACAAAGCT 2640156 29 100.0 32 TGACAAAGCT ............................. TAAAGGAGAAGAAAGACATGATAGAGACAAGG 2640217 29 100.0 32 AGAGACAAGG ............................. CCGGTGGGGCCCCTCCTTCCTCCCTGCCGGGG 2640278 29 100.0 32 CCTGCCGGGG ............................. TTTTCGTCCGTGGTCGGATTTCCGATGCCGGT 2640339 29 100.0 32 CGATGCCGGT ............................. CTGTCGGCAAACCGTCCGGCAATGTCAGCGGC 2640400 29 100.0 32 TGTCAGCGGC ............................. TGCAACAGTCGGACGTACTGCACGTCATGGGG 2640461 29 100.0 32 CGTCATGGGG ............................. GCGGCGAGACTGACGCAAAGGCCAGTTTCGAC 2640522 29 100.0 32 CAGTTTCGAC ............................. ATCATGGTATATGCTCCTTTTGCTTTGAAGTT 2640583 29 100.0 32 CTTTGAAGTT ............................. AACGGTATCGACGTAACGACCACACCAGAGGG 2640644 29 100.0 32 CACCAGAGGG ............................. GTATTGATTGCCCTGTTGACGGACAGGGCTTT 2640705 29 100.0 32 ACAGGGCTTT ............................. TTGAGTTTTTAATAAACCGGCCTTTATTGTTT 2640766 29 100.0 32 TTTATTGTTT ............................. CTCCCTGATGATCCCGTGTTCGCCGTGAATGT 2640827 29 100.0 32 CCGTGAATGT ............................. CCCGTGGCGTGGTTCGATCCGCTTTCCACGTA 2640888 29 100.0 32 TTTCCACGTA ............................. ATGTGATTAACTACTACGGTATTATAATGAGC 2640949 29 100.0 32 TATAATGAGC ............................. GATTGAGTATTTTGCCCATGTGTCCAATAAGG 2641010 29 100.0 32 TCCAATAAGG ............................. TTCCCTAAACTCACGACCAGGGCCGGTAAGCA 2641071 29 100.0 32 CCGGTAAGCA ............................. GCTTTCGTTTCTTCGCTCAGTTGAGCATGTGC 2641132 29 100.0 32 GAGCATGTGC ............................. CGGTAGTAGTGTAAAGCCATAGAGGATTAGAC 2641193 29 100.0 32 AGGATTAGAC ............................. GTTGTCTCCTCGCAGTCAATGACTGCTGGCGA 2641254 29 100.0 32 CTGCTGGCGA ............................. TTTCCGCCTGGGGTGTGTATTGGATGCACACC 2641315 29 100.0 32 GATGCACACC ............................. TTCGATTGCCTCGCTTTCCGGTCTGCCATCAA 2641376 29 100.0 32 CTGCCATCAA ............................. CTCTGCCGCTTGCAATCGTGCGTTGAGTTCGC 2641437 29 100.0 TTGAGTTCGC ............................. ACTTGTTGCA ========== ====== ====== ====== ========== ============================= 51 29 32 CGGTTCATCCCCGCGGGTGCGGGGAACGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [38.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [366,80] Score: 0.18/0.18 # # Final direction: R [0.18,1.05 Confidence: HIGH] >NC_010816 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2262845 36 100.0 28 NNNNNNNNNN .................................... AGGCTTCCAGCAAGCCCTCGATCGTGGT 2262909 36 100.0 28 NNNNNNNNNN .................................... GCACTCAGGAATATGGCACCGCAATCCC 2262973 36 100.0 28 NNNNNNNNNN .................................... TATAAGGCAAGCGCCCAGACTTGGGTGT 2263037 36 100.0 29 NNNNNNNNNN .................................... GGAGACATTGAAGGCCTTCGCACTGTTCA 2263102 36 100.0 28 NNNNNNNNNN .................................... AACCTGTTGGCCTGGTCCCAGTCGGCCG 2263166 36 100.0 28 NNNNNNNNNN .................................... ATGCTAACTATACACCTTCACTGCCATG 2263230 36 100.0 28 NNNNNNNNNN .................................... AGGAATGATTATGGCTATCATCATGCAC 2263294 36 100.0 28 NNNNNNNNNN .................................... TAAATAGACTTTATGACACTGCTGCAGC 2263358 36 100.0 28 NNNNNNNNNN .................................... TCCATGACCGCGTCCATCACCTCATGCC 2263422 36 100.0 29 NNNNNNNNNN .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 2263487 36 100.0 28 NNNNNNNNNN .................................... TCCTGCAACTCCTCCTTGCGGGCCTTCA 2263551 36 100.0 28 NNNNNNNNNN .................................... GTTGTTCCGGGAACAACTGGGAACAACT 2263615 36 100.0 28 NNNNNNNNNN .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 2263679 36 100.0 29 NNNNNNNNNN .................................... ACGCGGCGAAGAATCTTGTTATCGCGGCT 2263744 36 100.0 29 NNNNNNNNNN .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 2263809 36 100.0 28 NNNNNNNNNN .................................... GCCAACGGCGCGTACACCGGCAACTTCA 2263873 36 100.0 28 NNNNNNNNNN .................................... AAGAAGACCGCGACTATCGGCTACCAGG 2263937 36 100.0 29 NNNNNNNNNN .................................... GTGGGAATCCTGTTGAAGTGGGGTGAGGA 2264002 36 100.0 28 NNNNNNNNNN .................................... AGGAGGTTCAACGCAAGTATTTCACGGC 2264066 36 100.0 28 NNNNNNNNNN .................................... AGTCATTTGGTGTGCCTTTCACGATGAT 2264130 36 100.0 28 NNNNNNNNNN .................................... TTGCATACGATGTCGAATATCCCCTCTC 2264194 36 100.0 28 NNNNNNNNNN .................................... TGTCCTGCATTTCGTGCAAGACCGCTTC 2264258 36 100.0 28 NNNNNNNNNN .................................... TGTACGCTGACGAGTTTCCTGTTGCTCA 2264322 36 100.0 28 NNNNNNNNNN .................................... CGGCCCAACGGAGGTAGGTGCTGCGATG 2264386 36 100.0 28 NNNNNNNNNN .................................... CCAGTTCGACGCGTAGGCGCGAGTGTCC 2264450 36 100.0 29 NNNNNNNNNN .................................... CCCTTGCGCGTACTGTGCTTGTAGGTGGC 2264515 36 100.0 28 NNNNNNNNNN .................................... CGTAAACCTTGTTAAACAAGTTGTCAAA 2264579 36 100.0 28 NNNNNNNNNN .................................... CTGTGGCTTCTTCACCTTCGGCACCTTC 2264643 36 100.0 28 NNNNNNNNNN .................................... TTTTCTCCAGCACACGGACGTAATCGGC 2264707 36 100.0 29 NNNNNNNNNN .................................... CCAAGTGTGGGCCGAACTCAACAACTAAG 2264772 36 100.0 28 NNNNNNNNNN .................................... TCAATTCCGCGTCAACTTTCCAGCACAT 2264836 36 100.0 29 NNNNNNNNNN .................................... CGCCTCGCCGCCGCACGAGAACGAGTCAA 2264901 36 100.0 28 NNNNNNNNNN .................................... TATGGTGTAGCCAACAACAAAAACAAAC 2264965 36 100.0 29 NNNNNNNNNN .................................... CCCTTGCGCGTACTGTGCTTGTAGGTGGC 2265030 36 100.0 28 NNNNNNNNNN .................................... TATGGTGTAGCCAACAACAAAAACAAAC 2265094 36 100.0 28 NNNNNNNNNN .................................... CGGGTAACAAGGTGGACATGCTCATTGA 2265158 36 100.0 29 NNNNNNNNNN .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 2265223 36 100.0 28 NNNNNNNNNN .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 2265287 36 100.0 28 NNNNNNNNNN .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 2265351 36 100.0 28 NNNNNNNNNN .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 2265415 36 100.0 28 NNNNNNNNNN .................................... TCGTCGATGTGCTCCAAGAGGTTTGGTG 2265479 36 100.0 28 NNNNNNNNNN .................................... TATTGTTCGGGTGCGATGGTGATGATCA 2265543 36 100.0 1 NNNNNNNNNN ..............................TTG.AT NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 43 36 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [52,393] Score: 0.18/0.18 # # Final direction: F [1.05,0.18 Confidence: HIGH] >NC_010831 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 1353854 35 100.0 40 CGGAGGTACA ................................... TGACATCCGCTCGATCTTCAAGTTTTGGTTCGTACCAGTG 1353929 35 100.0 40 CGTACCAGTG ................................... CGGTATCCGAACGCAGCGCCGCCGTTCTCGAGCTCATGAA 1354004 35 100.0 38 AGCTCATGAA ................................... AGACAGAAATTTTATCAACACATACGACAAGAGAGGTG 1354077 35 100.0 38 AAGAGAGGTG ................................... TCTTTTTTTCTCCTTGTGCCATAAGGCAACTCCTTTTG 1354150 35 100.0 42 ACTCCTTTTG ................................... TGAATATCTGTGTCGTTGTTCGAGATGCTCCCATCATTACTT 1354227 35 100.0 40 ATCATTACTT ................................... AATTGCAGAATTTTCATTATCTGCCCCGGTGTAATTTCCT 1354302 35 100.0 GTAATTTCCT ................................... TCCCGGATGATCTCCGGCGTGAGGAGTTCGAGCATCTCCTG ========== ====== ====== ====== ========== =================================== 7 35 39 GTAGGAAGACCCGATTAGCTACAGGGGATTGAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [11,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.40,-3.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [601,226] Score: 0.18/0.18 # # Final direction: F [0.92,0 Confidence: HIGH] >NC_010831 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2342646 28 100.0 33 NNNNNNNNNN ............................ CACCAGGGCCGCCATGCGCGGCCTTTAGGCGTG 2342707 28 100.0 33 NNNNNNNNNN ............................ CTGTATAGCAGTTATTCGGATCATTACCGACAC 2342768 28 100.0 33 NNNNNNNNNN ............................ CACTTGTGCGTCAAGATACTTTTTAACCGTCAA 2342829 28 100.0 33 NNNNNNNNNN ............................ CGCCTGGCCCGCCATTGCGCGGGCTTCGGGCGT 2342890 28 100.0 33 NNNNNNNNNN ............................ CGATATTTTGCGCTTGTCGCGTTTAATCGTTAC 2342951 28 100.0 33 NNNNNNNNNN ............................ CGGACTGTTGCTCGGTCAGCCGATGTTTATGTC 2343012 28 100.0 33 NNNNNNNNNN ............................ TCCTGTTGCGTCATGCACAAGTAAGGCAAGCAA 2343073 28 100.0 33 NNNNNNNNNN ............................ CAGCAGGGACTGAGGCAAGCAAAGCTGTTCAGA 2343134 28 100.0 33 NNNNNNNNNN ............................ CAAAAGGAACAACATCATGACACTTACCGAACT 2343195 28 100.0 33 NNNNNNNNNN ............................ CACTAACTCCGATCCCCACCACGTCCGCGACAA 2343256 28 100.0 33 NNNNNNNNNN ............................ CGGATTATAACCCCGGTGTGACCAATAGGGATC 2343317 28 100.0 33 NNNNNNNNNN ............................ CAGCCCGTTCACTGATCACCTCCTCTCGGCAAT 2343378 28 100.0 33 NNNNNNNNNN ............................ CATGATAGGTTTATACAGTGAGAAATATGGATT 2343439 28 100.0 33 NNNNNNNNNN ............................ TTGCAAAAGTTACACTCATCATTCCTAATGGCC 2343500 28 100.0 33 NNNNNNNNNN ............................ CTTACAAGTATCGCTTTGATCAGTCGGTCCCGG 2343561 28 100.0 33 NNNNNNNNNN ............................ CTCTTGTGTTGACTTTGTTACAAGTCTGAGTCG 2343622 28 100.0 33 NNNNNNNNNN ............................ CATTTCAAGAAGCTCGTCATAATCACCATCGGT 2343683 28 100.0 33 NNNNNNNNNN ............................ TCGTGCCAAAAGCGGCTGGTTCATCGTCATAGG 2343744 28 100.0 33 NNNNNNNNNN ............................ CAGCGTCTGACGGAACCGGGAAAAAAGATGTTT 2343805 28 100.0 33 NNNNNNNNNN ............................ TCTTGGTGATCATGCGTGATCCGTCCTGGTATT 2343866 28 100.0 33 NNNNNNNNNN ............................ TCCGGTAAAGATGCTCGCCAGATCACCGCCGAC 2343927 28 100.0 33 NNNNNNNNNN ............................ TTGCTCCGACGTTCAGGATTTTTCCTGTATACG 2343988 28 100.0 33 NNNNNNNNNN ............................ TACCGGCAGCTTTGTTAAGCTGAAAAAGCGTTT 2344049 28 100.0 33 NNNNNNNNNN ............................ CGTTGTAACCTATCGCGAGAGCGATTTGCGGCC 2344110 28 100.0 33 NNNNNNNNNN ............................ TCTATATGTCTCTTTGGGACTCAACACGACGCC 2344171 28 100.0 33 NNNNNNNNNN ............................ CCAGCCCCGGCATATGACTGGGGCGCATCTAAC 2344232 28 100.0 33 NNNNNNNNNN ............................ TATGTAAAAGATCGTTGTTTTCTACGATCCCAC 2344293 28 100.0 33 NNNNNNNNNN ............................ TGGCAAGGAGCAATCTTCGTCCACTGGCATCGC 2344354 28 100.0 33 NNNNNNNNNN ............................ TACTGCAAGTTCGGCACTATCTCGATTTAGTGG 2344415 28 100.0 32 NNNNNNNNNN ............................ CCGCCTGGCCCGCTTTACGCGGGCTTTAGGCG 2344475 28 100.0 33 NNNNNNNNNN ............................ TCAATTCTTCGAGCCACTCGATCGCCCCATTGG 2344536 28 100.0 33 NNNNNNNNNN ............................ CCGGGAAAAAAGATGTTTCCGGAAAAGCGATCA 2344597 28 100.0 33 NNNNNNNNNN ............................ TATGATTACTTCGTCACAGGCTTTTAGAAAATT 2344658 28 100.0 33 NNNNNNNNNN ............................ CAAAAGCGAAATACAAAACCTGAAAGATCAGAT 2344719 28 100.0 33 NNNNNNNNNN ............................ CTGTAAAACTATGGGCATACCGATTATTGGTGA 2344780 28 100.0 33 NNNNNNNNNN ............................ TTGCGTATATCTTGTAAAGGTGTTTCATTGTAG 2344841 28 100.0 33 NNNNNNNNNN ............................ CCTCGCGAACGGGTTTTCCTCTTTCGGCTTTTC 2344902 28 100.0 33 NNNNNNNNNN ............................ CGGGTGGCTGTACCTGATACAGGATCAATGATC 2344963 28 100.0 33 NNNNNNNNNN ............................ CAGCGCGTGCAGGGCAAAACAACTTTCTCTGAG 2345024 28 100.0 33 NNNNNNNNNN ............................ CAGGACAACAGAGATGAACTATCAAGAGGCATT 2345085 28 100.0 33 NNNNNNNNNN ............................ CCGTTACGGTCACGGGTAAGAACGGCAGCGGTA 2345146 28 100.0 33 NNNNNNNNNN ............................ TACAGCGACCAGGCTGAGCAGCAGCTTGATGCC 2345207 28 100.0 33 NNNNNNNNNN ............................ CTTCTTCCATCACCTCGCTTATATGCCGGGTGT 2345268 28 100.0 33 NNNNNNNNNN ............................ ATAACACCGGGCCATCAGGGATGATGAGCGTAA 2345329 28 100.0 34 NNNNNNNNNN ............................ TGCATTCCGTCAGGGCGCCTCCATACCCCCCCCC 2345391 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 46 28 33 GTCTTCCCCACAGGCGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-10.90] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [21,651] Score: 0.18/0.18 # # Final direction: R [0,0.55 Confidence: HIGH] >NC_010831 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1363799 37 100.0 39 ACAGGGTACA ..................................... AAGCCCATTTCTGCTATTGCGCAACAAATTACTCGTAGG 1363875 37 100.0 40 TACTCGTAGG ..................................... CTGGACTTTCCGGGATTTTTTTCAGCACAGCAAGATGATT 1363952 37 100.0 39 CAAGATGATT ..................................... AGTTTGAATCCGCCTTCGTCGCCTATTGTTTCGATATAT 1364028 37 100.0 39 TTCGATATAT ..................................... AGTTTGAATCCGCCTTCGTCGCCTATTGTTTCGATATAT 1364104 37 100.0 39 TTCGATATAT ..................................... TCCGAGGAAAAGAGAGGTATCGCCTGTTTCGTTTGGCGT 1364180 37 100.0 39 CGTTTGGCGT ..................................... CGAACGCGAAGATGAATACTATGCCTCCAGTGGCTTGAT 1364256 37 100.0 GTGGCTTGAT ..................................... GCACATGCCAGGCGCAGAACATCCGTCGGTGTGTCAATCA ========== ====== ====== ====== ========== ===================================== 7 37 39 GTAGATGAAGACCCGCTTGGATAAAGGGGATTGAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:51.35%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.40,-4.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [121,572] Score: 0.18/0.18 # # Final direction: F [0.37,0.18 Confidence: MEDIUM] >NC_010939 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 243045 28 100.0 32 NNNNNNNNNN A..TGTG..................... GCAGTCAGTCATCAGCTTGGACTTTTACTAGA 243105 28 100.0 32 NNNNNNNNNN ............................ TTTTCCCCCACCAACCGAGTGTTTTCAACATT 243165 28 100.0 32 NNNNNNNNNN ............................ GCTTGAGATTTCATTTTCTCCTTTTTCTCAAA 243225 28 100.0 32 NNNNNNNNNN ............................ ATTGTCAGAAAGAGGACTTTTTTCCATTTAAA 243285 28 100.0 32 NNNNNNNNNN ............................ GGTATCAATAGAGTATTGAATCTTGTTCGGGC 243345 28 100.0 32 NNNNNNNNNN ............................ TGGATTGGCGTGTATTCTTCGCTTTCTTCGTT 243405 28 100.0 32 NNNNNNNNNN ............................ ACGTTTTTCCAGTAATTGCAATCTTGGTCTTG 243465 28 100.0 32 NNNNNNNNNN ............................ TGGATTGGCGTGTATTCTTCGCTTTCTTCGTT 243525 28 100.0 32 NNNNNNNNNN ............................ AGTAATTTATGCCGGTTTAAGACAAATTATTT 243585 28 100.0 32 NNNNNNNNNN ............................ TTTTCCTAACCTTGTTTTTTCTAATGTGCATT 243645 28 100.0 32 NNNNNNNNNN ............................ TACGAGACGCACAAGTTTATCAAGAGTTCGAC 243705 28 100.0 32 NNNNNNNNNN ............................ CGCTTGTTACGGCGGTCAAAAGGTCTCATTAT 243765 28 100.0 32 NNNNNNNNNN ............................ CTACTGCTCATTTTTTCCTCTCTTTATTTAAT 243825 28 100.0 32 NNNNNNNNNN ............................ TCACAAACCGGCGAATTACATTCCTCTATTGT 243885 28 100.0 32 NNNNNNNNNN ............................ AATTTGACCGCACTTTAAACCCGATTTAAAGA 243945 28 100.0 32 NNNNNNNNNN ............................ TGCTACCGTAAAAATCACGCCAGCTTTGGTCA 244005 28 100.0 32 NNNNNNNNNN ............................ AAGAAATCCGTCAAATTGCGTGGATATCAACT 244065 28 100.0 32 NNNNNNNNNN ............................ GGAAGGATGATGAGTTTTTAGGTTTTGAAAAT 244125 28 100.0 32 NNNNNNNNNN ............................ GGAAGGATGATGAGTTTTTAGGTTTTGAAAAT 244185 28 100.0 32 NNNNNNNNNN ............................ AACGGCTGTACAGTCGATTGGTTAAGCGCAAA 244245 28 100.0 32 NNNNNNNNNN ............................ TATTATTCTCGCCATTACCACCGCCTTTTTTT 244305 28 100.0 32 NNNNNNNNNN ............................ TTTCTGATGCTAAAACTGCTATCGTTTCGCTT 244365 28 100.0 32 NNNNNNNNNN ............................ TTCATACGTCTTTACCTCTGTTTCAATATATT 244425 28 100.0 32 NNNNNNNNNN ............................ AATAGGTCATAGCACATATTGATTTTACGTTC 244485 28 100.0 32 NNNNNNNNNN ............................ AAGATTAAAAATAAGTTTGGTTTCGATTCAAA 244545 28 100.0 32 NNNNNNNNNN ............................ AGTGAGTCAAAATATTCTTGTAGTTCTTGTTT 244605 28 100.0 32 NNNNNNNNNN ............................ TCTTTAGCGTTCTCGACCAGTTTCAAATCAAA 244665 28 100.0 32 NNNNNNNNNN ............................ GCTTTAATCAAAGCAGCTAAATCATCGTGGAA 244725 28 100.0 32 NNNNNNNNNN ............................ TTAGATATTCATGGCAATCCGTTTCGCTTTGA 244785 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 30 28 32 TTTCTAAGCTGCCTATACGGCAGTGAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [38,144] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_010943 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 3719751 19 100.0 20 NNNNNNNNNN ........G.......... CGGGGCAGCCTTCTTGGTGG 3719790 19 100.0 44 NNNNNNNNNN ........G.G.T...... CACTGCCTTCTTGGCGGTCTTCTTGACGGCCTTCTTGGCAGTCG 3719853 19 100.0 56 NNNNNNNNNN ........G.GA....... GGCCGGCTTGCGGGCCGTTGCCTTCTTGGCAGTCTTCTTGGTGGCCTTCTTGGCTA 3719928 19 100.0 44 NNNNNNNNNN .......G..G........ CGCGGTCTTCTTGGCAGGAGACTTCTTGGCTACCTTCTTCGCCG 3719991 19 100.0 32 NNNNNNNNNN ................... CGCAGTGGCCTTCTTGGCGACCTTCTTCGCAG 3720042 19 100.0 20 NNNNNNNNNN ................... GGCGGTCGCCTTCTTCGCGA 3720081 19 100.0 20 NNNNNNNNNN ................... GGCAGCGGCCTTCTTCGCGA 3720120 19 100.0 1 NNNNNNNNNN ..........C........ NNNNNNNNNN ========== ====== ====== ====== ========== =================== 8 19 33 CCTTCTTCACTGCCTTCTT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.63%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [30.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [201,374] Score: 0/0.18 # # Final direction: R [0,0.68 Confidence: HIGH] >NC_010831 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2492337 29 100.0 36 GAGCAAAGTT ............................. TCAGATGACAAAAATGAAATATAAAGGGTGAAAAAG 2492402 29 100.0 36 GGTGAAAAAG ............................. GCAGGCGGCTAATTACGGCAGTACTGTAGACCAGTA 2492467 29 100.0 38 TAGACCAGTA ............................. ATTCTGGTGATTTTATGGCTAAATTTCCCGGTTCTAAA 2492534 29 100.0 37 CGGTTCTAAA ............................. ATAGTTGTAACGGATTCTTGTTTGCAAATACATCTGT 2492600 29 100.0 38 ATACATCTGT ............................. CCCCAATACTGTTTTGCTTATCCGCATTGAAATTTGTA 2492667 29 100.0 GAAATTTGTA ............................. CCGTCATGTT ========== ====== ====== ====== ========== ============================= 6 29 37 GTTTCAATTCTCCATGAGTGCGATTAGAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.07%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.10,-0.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [379,524] Score: 0/0.18 # # Final direction: R [0.37,4.5 Confidence: HIGH] >NC_010995 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 2797480 32 100.0 34 NNNNNNNNNN ACCA.T.CT....................... ACTGAAACTGGCTCGCACGGCTCGCGCAGTACAA 2797546 32 100.0 36 NNNNNNNNNN ................................ TGTAATCAACGACCGGGCTTTCTGCTCGATACCCTC 2797614 32 100.0 33 NNNNNNNNNN ................................ GCAGCGGCAGATGGTTTCTTCCTGGCCGGTTTT 2797679 32 100.0 35 NNNNNNNNNN ................................ CCGGGAGCGCCGTTGGGCGCGGGACCCCGTGAGCG 2797746 32 100.0 34 NNNNNNNNNN ................................ TGGGTTTAACTGCTGGTGCAGATGCTCATTGAGT 2797812 32 100.0 34 NNNNNNNNNN ................................ CGATGCCGCGTAAGCGAACCTTTACCCTTGAGCA 2797878 32 100.0 34 NNNNNNNNNN ................................ CGGCGCTGGTAGTCGTACAGGGGCAATGCTGGCT 2797944 32 100.0 34 NNNNNNNNNN ................................ GCATAACCAGCTGCCAACCTTTGAGGTGTTATAT 2798010 32 100.0 34 NNNNNNNNNN ................................ GCACCCGCTCGGCATCGGTACCAACAATTGTTGA 2798076 32 100.0 35 NNNNNNNNNN ................................ CACCTGTGGTGGGCTAGATGCGACTGCGGGAACGA 2798143 32 100.0 36 NNNNNNNNNN ................................ GTCCGCGAGGATCTGCGCTGTACGGGTGTAGTTCTC 2798211 32 100.0 34 NNNNNNNNNN ................................ TTTTAGACTGCAACGCAAAACAAATTTGCGTGGA 2798277 32 100.0 34 NNNNNNNNNN ................................ CCGCCAAGCAATCCACGTTTGTCACCGAATATCT 2798343 32 100.0 35 NNNNNNNNNN ................................ GGACAACATCCGGTGCTTTCAGCTTTCATCCACAG 2798410 32 100.0 34 NNNNNNNNNN ................................ TTCTTGATGCTTTACCAGGGCCACTTTGCTCCCT 2798476 32 100.0 34 NNNNNNNNNN ................................ CATTAAATTCAGGGCAGAGAGCAACACCACCTAT 2798542 32 100.0 34 NNNNNNNNNN ................................ TCGATCAATAGATAGGTTAACATCTCGCCGAGTC 2798608 32 100.0 34 NNNNNNNNNN ................................ CGCTGCGCTTTTTTGCCCTCGGCAAAATTAGCCG 2798674 32 100.0 35 NNNNNNNNNN ................................ CCCTTGGCGCGCTTTATAGACTACTCGACCTGTAG 2798741 32 100.0 34 NNNNNNNNNN ................................ AACCGTATCACTGTCGGGTAGTCGTTTTTATTAC 2798807 32 100.0 35 NNNNNNNNNN ................................ CAATCATGGCGGCTGCCAATAATCAATTAACGCCT 2798874 32 100.0 35 NNNNNNNNNN ................................ GGTATCAAGCCGCTGGCAAATGCTGCAAAAGCTGT 2798941 32 100.0 35 NNNNNNNNNN ................................ TATCCAATTTCGATTTACTCCGACCCATACATGAA 2799008 32 100.0 34 NNNNNNNNNN ................................ TTCGGGTTAATACCGCACCGACAGATATACCGGT 2799074 32 100.0 34 NNNNNNNNNN ................................ GCGCTTTAATGATTCTACGCGTGACTGATATGCA 2799140 32 100.0 34 NNNNNNNNNN ................................ TGCGCTACCCAGGTGAGCCGTCTGCACTCACCTG 2799206 32 100.0 33 NNNNNNNNNN ................................ TTATAATCCGCCGTGCCTGTCTCCAGGTAGACC 2799271 32 100.0 34 NNNNNNNNNN ................................ ACTTTAGCGATGGCAACCAGAACATCAACAACAA 2799337 32 100.0 35 NNNNNNNNNN ................................ GGCAATTCCTCTACATGATCGATGACGTACCTCCT 2799404 32 100.0 34 NNNNNNNNNN ................................ TTGTGCGCGTTTACGCTCAGCGGCAGACATGGCA 2799470 32 100.0 34 NNNNNNNNNN ................................ CAAAAGTGTTTAAGGGGTAGGGTATGTTTATTCT 2799536 32 100.0 34 NNNNNNNNNN ................................ ATCTGTTCGCGGCTATCGATCTGGCCAATCCCTG 2799602 32 100.0 34 NNNNNNNNNN ................................ GTGTGGTGGCCGTTGGCCTGGTGGCGTGGGCATT 2799668 32 100.0 35 NNNNNNNNNN ................................ CACATTAACCAGAGAAAACTTGGTGATGTCACAGG 2799735 32 100.0 34 NNNNNNNNNN ................................ GTTCAGCGTGTATTGATTCCTGCACTGCAAGCGG 2799801 32 100.0 34 NNNNNNNNNN ................................ ACATGTACCCAAAGAGGCTACCTATTTGCTGGAT 2799867 32 100.0 34 NNNNNNNNNN ................................ GCGTATCCATAACACGGCCACTGGGCACAAGAAT 2799933 32 100.0 34 NNNNNNNNNN ................................ CCGGCTGGATGACATTACGCATTTGATTCATGGT 2799999 32 100.0 34 NNNNNNNNNN ................................ ATTTATGCGCGTATGGTGTGGGGGCTCGACAAGT 2800065 32 100.0 34 NNNNNNNNNN ................................ TGGTGTTCAGGGATTCGCAGCTAAAGAGAGGCAA 2800131 32 100.0 34 NNNNNNNNNN ................................ TTTCTTATCCCTTGGTGTCAATTTCAATATTAAT 2800197 32 100.0 33 NNNNNNNNNN ................................ TTACAAGCGGATCTTTGTTGTTGTTGAAATACA 2800262 32 100.0 34 NNNNNNNNNN ................................ CTGGTAGAGACTGCAGCCGCAGAAACCCTGTGCG 2800328 32 100.0 35 NNNNNNNNNN ................................ CAGGTGTCGGGCTCAGAGGGTGATATAGGGTCACT 2800395 32 100.0 33 NNNNNNNNNN ................................ CAAGGGGATCGATATTAGTGTTACCGATGCAGT 2800460 32 100.0 33 NNNNNNNNNN ................................ CCACCAAGATCGCTTAAAGATTTTTTGGCGTTA 2800525 32 100.0 33 NNNNNNNNNN ................................ CTTTAGGTTTGCCCTAACTCCAAGCCTTTCTGA 2800590 32 100.0 35 NNNNNNNNNN ................................ TTCGCCCGCTTCGGTCGCTTTGCCGATAATCGCAT 2800657 32 100.0 35 NNNNNNNNNN ................................ TCGGAATGCTTGGTATTGCTGCGGTCGCAGAACTT 2800724 32 100.0 35 NNNNNNNNNN ................................ ACGGCTTCAGCTATTGACTCGTCACCGGTGCGGCT 2800791 32 100.0 34 NNNNNNNNNN ................................ CTGAAACATACCTTCGCGCCAAGCAAATGCTTTT 2800857 32 100.0 34 NNNNNNNNNN ................................ CAGATCGGACGCGCTACCACTTCTTGTGCACGAT 2800923 32 100.0 34 NNNNNNNNNN ................................ CTTCCGTGTTACCTGTCTGGTTGTAGTACCCGCT 2800989 32 100.0 34 NNNNNNNNNN ................................ AGGAGCTCTTGCCACAGTTGCACACCGGTGGCTT 2801055 32 100.0 34 NNNNNNNNNN ................................ TTCTCTTGAAGTTAAAGACGCTGCTACAGATGCA 2801121 32 100.0 34 NNNNNNNNNN ................................ CGAACAATGCGATACTTGTTGTTCTGTTAACATT 2801187 32 100.0 35 NNNNNNNNNN ................................ TAAGGCAAACAGCAGAAATTGATGGCCATAGTATT 2801254 32 100.0 35 NNNNNNNNNN ................................ ACTATCTTGGGCGTGAAGTTGGTCGTCCTGACCTT 2801321 32 100.0 34 NNNNNNNNNN ................................ TAAATCCGTTAATAGAGCTCTTCTGATGGATAAA 2801387 32 100.0 35 NNNNNNNNNN ................................ GCGCGGCATTGCAAGGTAGAACTTTTACGATAGCA 2801454 32 100.0 35 NNNNNNNNNN ................................ TTTCCCAGGTGGTTAATGTCCGTACTTCAGTTTTT 2801521 32 100.0 34 NNNNNNNNNN ................................ CCCGCTTTACTGTATAGCCAAATACCAAGAGCGC 2801587 32 100.0 34 NNNNNNNNNN ................................ TGGATGAATAGTTACCATCGTACCGCCAGGCGTT 2801653 32 100.0 34 NNNNNNNNNN ................................ CCACCACCATCTGTTCCTGCCTTGTCCCAATAAC 2801719 32 100.0 34 NNNNNNNNNN ................................ CCGAGATTATCAGCGCACATGCTGAGGCCAGTCT 2801785 32 100.0 34 NNNNNNNNNN ................................ CATTGACTCTGCGTAGCAGTGATCGCATCCAGGG 2801851 32 100.0 35 NNNNNNNNNN ................................ TACCAGCGTGTGAGTGGGGCGAACGATATAGCCGA 2801918 32 100.0 33 NNNNNNNNNN ................................ ACAAACGGGGCTTTGACATACAAAAAACTTGCT 2801983 32 100.0 33 NNNNNNNNNN ................................ TTGTAGGGCCATCGGCTGTTGGCCCGGCTGGCA 2802048 32 100.0 34 NNNNNNNNNN ................................ CTTCCGCTGCGCGAATAATCAATTCAAATTGGCT 2802114 32 100.0 34 NNNNNNNNNN ................................ GTGCTACGAAGACAACCCTCACGATGCTCTTGAG 2802180 32 100.0 35 NNNNNNNNNN ................................ TTTCATGTCCGAATTATCAAAAACTTTCTGCGACA 2802247 32 100.0 1 NNNNNNNNNN ................................ NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 73 32 34 GTTTCAATCCACGCGCTCGCGAAGAGCGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [7,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.00,-5.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [4,178] Score: 0.18/0.18 # # Final direction: R [0.37,5.73 Confidence: HIGH] >NC_011025 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 539513 36 100.0 30 NNNNNNNNNN .................................... ATTTAATAGAACAATTAAACCTGATTATAT 539579 36 100.0 30 NNNNNNNNNN .................................... AAATTTGTTATCTAATAATTCAGCGATATT 539645 36 100.0 30 NNNNNNNNNN .................................... TTAACATAATCTTCAATGGGGACAAACTCC 539711 36 100.0 30 NNNNNNNNNN .................................... ATGCCATGATGATGTAACCTGTTGGTCTTA 539777 36 100.0 31 NNNNNNNNNN .................................... ATTGGGAACAGCAAGAACCATAAAAATGCAC 539844 36 100.0 30 NNNNNNNNNN .................................... AAATATCTACACGCTCTAAGTACTGCTTTA 539910 36 100.0 30 NNNNNNNNNN .................................... TATTTTCAGTTCAAATTTGCTTAATACCTT 539976 36 100.0 31 NNNNNNNNNN .................................... TTAGCGAACTTGGTAGTAAGACTAATAGACT 540043 36 100.0 30 NNNNNNNNNN .................................... AATTCAAAGATGATAACCGTAAAAAATGAG 540109 36 100.0 30 NNNNNNNNNN .................................... ATTAACTTTTGTTATGCTGTGAAAACCGTA 540175 36 100.0 31 NNNNNNNNNN .................................... TCTTAACCTTTCAGTTAATTCTGCAATTTTA 540242 36 100.0 30 NNNNNNNNNN .................................... ATTTATAATAATTTTCATGCGTAAATTCCT 540308 36 100.0 30 NNNNNNNNNN .................................... TGATAGTATTGTGACATCAATCATGTAATC 540374 36 100.0 30 NNNNNNNNNN .................................... TCATTTTGATTATATACTTGCTTCGGCATA 540440 36 100.0 30 NNNNNNNNNN .................................... TAATGATAATAACGATTATGATCTAGTTGT 540506 36 100.0 30 NNNNNNNNNN .................................... TCAGCCAGAATTGTTTTTTAGTCAATCAGT 540572 36 100.0 30 NNNNNNNNNN ..............T..................... CCAGCCAGCATTACTTTTTAGTCAATCAGT 540638 36 100.0 30 NNNNNNNNNN .................................... TCAGCCAGAATTGTTTTTTAGTCAATCAGT 540704 36 100.0 30 NNNNNNNNNN ..............T..................... CCAGCCAGCATTACTTTTTAGTCAATCAGT 540770 36 100.0 30 NNNNNNNNNN .................................... TGATAAAACCAGTGCAAAATTGATTGGATA 540836 36 100.0 30 NNNNNNNNNN .................................... TCGAAGTTTTCAAAATAAATCGCTCTGCCA 540902 36 100.0 30 NNNNNNNNNN .................................... GGTCACTATAAATAACTTCAATAAAATTTT 540968 36 100.0 31 NNNNNNNNNN .................................... ACGAAGCTTTTAAAGAATTGAAATTGATAAA 541035 36 100.0 30 NNNNNNNNNN .................................... CTTTTTCTCTTTTAGCATCGGAAAAAATAA 541101 36 100.0 30 NNNNNNNNNN .................................... ATAACTGTCTAAGTGGTGTTCATTAATATG 541167 36 100.0 30 NNNNNNNNNN .................................... TTTCACACTTCTTGTATTGCAGGTGATTTA 541233 36 100.0 30 NNNNNNNNNN ...................................C AAAACCAGGCCACTATATTTTTATAAAAAT 541299 36 100.0 30 NNNNNNNNNN ...................................C CCAAAGGATTTACAACGGTTTTATATCCTA 541365 36 100.0 32 NNNNNNNNNN ...................................C TCTTAATTCTTTTAAACTGTCTGCTTTGTTGA 541433 36 100.0 30 NNNNNNNNNN ...................................C AATATATAACCTGGATCATTAACAGGTGAG 541499 36 100.0 30 NNNNNNNNNN ...................................C TTTTGCCACAAAACTACAGGAGCTTTTGTT 541565 36 100.0 30 NNNNNNNNNN ...................................C TTTTTCATTGCTACTCTAATTGGGTTTGCC 541631 36 100.0 31 NNNNNNNNNN ...................................C ATTTAGGATTGTATTTTTGAACTGTCCCTAA 541698 36 100.0 1 NNNNNNNNNN .................................G.C NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 34 36 30 ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [8,111] Score: 0.18/0.18 # # Final direction: R [0.41,0.55 Confidence: LOW] >NC_010999 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2327048 36 100.0 30 NNNNNNNNNN .................................... TAACTTCTCGATGGATGTGTTAGGATAATA 2327114 36 100.0 30 NNNNNNNNNN .................................... AACAACTTGGGATTTGATTGTTAAAGTCAT 2327180 36 100.0 30 NNNNNNNNNN .................................... TCCATGGTAAAAACCTCCTATTATTTTGTT 2327246 36 100.0 30 NNNNNNNNNN .................................... TGTTGCAATCGGTGAAAGTATCGCGATTGC 2327312 36 100.0 30 NNNNNNNNNN .................................... ACTTGATCATGCAGAAGGATATTGACGAGT 2327378 36 100.0 30 NNNNNNNNNN .................................... GCGACAATCTCCCGACTGATGATATTGGCC 2327444 36 100.0 30 NNNNNNNNNN .................................... CGATGTGTTCTTGTCAAAACATTTTTTGCG 2327510 36 100.0 30 NNNNNNNNNN .................................... AACATATTGATCAGCCTTTCTTCAACGATC 2327576 36 100.0 30 NNNNNNNNNN .................................... CCATAAAGTTGCTAATTCTAGAAATATTTT 2327642 36 100.0 30 NNNNNNNNNN .................................... TGTCAGCCATAAGCGTGTTAGCCGCTACGA 2327708 36 100.0 30 NNNNNNNNNN .................................... CGAGACCAACACCAGCGCAAGCGAACGCTT 2327774 36 100.0 30 NNNNNNNNNN .................................... GCGCGAGTTGATCGCAACGGAAGGCAGTTT 2327840 36 100.0 30 NNNNNNNNNN .................................... GCCAGTTGTTTAATGGATAAGCCTCTGATA 2327906 36 100.0 30 NNNNNNNNNN .................................... TTCGTCTTTAAGCGGTGCTAACCAATTTGG 2327972 36 100.0 30 NNNNNNNNNN .................................... GGTTTCTTCGTTTACAATCGTGCCGCGATC 2328038 36 100.0 30 NNNNNNNNNN .................................... CGGTCAACTGTTGTGCGGTTTCATCAGTGC 2328104 36 100.0 30 NNNNNNNNNN .................................... AGTGAGCCGGTGCATATTGCACCGGCTTTT 2328170 36 100.0 30 NNNNNNNNNN .................................... TGGTAATGGGTCGTCCGCATTATGATATTC 2328236 36 100.0 30 NNNNNNNNNN .................................... CAGTAGATAAGATTGTTTTTGTCAAGTTTC 2328302 36 100.0 30 NNNNNNNNNN .................................... GGGGTGATTTGTTGCATACCCACAATGTCA 2328368 36 100.0 30 NNNNNNNNNN .................................... GCCGTCTAAGCTGTTGTTCTGGAGAAAACA 2328434 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 22 36 30 GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-2.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [142,26] Score: 0.18/0.18 # # Final direction: F [0.45,0.37 Confidence: LOW] >NC_011026 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2683901 30 96.7 35 CTAACCGATT -............................. ATAGTCGCGACTTGTTCCATTTCTGTCTCTGTAAT 2683966 30 100.0 37 TCTCTGTAAT .............................. TTGCTTCCGCTGATGGCGGAGAGCCTTGCGAGTGTTG 2684033 30 100.0 38 GCGAGTGTTG .............................. AACTCTTGTATTTCTTCAAGAGTTTTTTGATAAAGAAA 2684101 30 100.0 36 GATAAAGAAA .............................. ACATTGATGTTGATTATATCGTCCAGGACAATGATT 2684167 30 100.0 37 GACAATGATT .............................. GTTTTAGTTGAGCGAGCGAACCTCTCATAAAGGCCAA 2684234 30 100.0 36 TAAAGGCCAA .............................. CCCTGAAGACTTTCCTGAAGACTTTAACGAATTGTC 2684300 30 96.7 36 ACGAATTGTC .................A............ ATTTTTCAACTTTTATGAAAGTAACGGGTGGAAAGT 2684366 30 100.0 36 GGTGGAAAGT .............................. TGTAGAAATCGAGACAAGGTTAGAGACTAAAACTCT 2684432 30 100.0 37 CTAAAACTCT .............................. TATTGATTAATATGCAAGCTTTTATTTACTTTTTTCT 2684499 30 100.0 37 ACTTTTTTCT .............................. AAGAACAGAAGGAAATAACTCAAAAAAAAGTTAATAT 2684566 30 100.0 37 AAGTTAATAT .............................. CTATATTTTGTAATGCGATTTTAATTTGATTGAAAAA 2684633 30 100.0 37 GATTGAAAAA .............................. CTATATTTTGTAATGCGATTTTAATTTGATTGAAAAA 2684700 30 100.0 37 GATTGAAAAA .............................. TTCGATAACGACAAACAGGAGATTTTAGACCTTGATG 2684767 30 100.0 37 GACCTTGATG .............................. TCATCGAGTGTACGGATGACGATGGGTTGGGTGCAAT 2684834 30 100.0 36 TGGGTGCAAT .............................. CCGTTATCGGGTATTCCTTCTTGCCCGCAACGGAAC 2684900 30 100.0 36 GCAACGGAAC .............................. TCAGCGCGGGCATAGGCGCCGAAGCAGATAAAGTTT 2684966 30 100.0 38 GATAAAGTTT .............................. AACCATTTGTATCGGCGGATAACGGCGAGGTAATCGGT 2685034 30 100.0 36 GGTAATCGGT .............................. GGAAGCTCCAGTAGTAATAGTTGAACCGAGAATTCT 2685100 30 100.0 37 CGAGAATTCT .............................. GGGTCGAATATAAAATTAACGCCGAATACGTATTATT 2685167 30 100.0 36 ACGTATTATT .............................. TGATGAGACAAGGCGAAAAGAGCATTACACATTCAA 2685233 30 100.0 36 ACACATTCAA .............................. TGTTGGAAATGTAATTCTTCCTGGCAAAGTTGATAT 2685299 30 100.0 37 AAGTTGATAT .............................. TCTATTCTCGTTAAAGAGCTTGGATCGGGGGAAATGG 2685366 30 100.0 36 GGGGAAATGG .............................. AAAAATACAAGATGCAATTACGTGTTGGTTATATTA 2685432 30 100.0 36 GGTTATATTA .............................. GGGAAACAATCATTGGTGCTGATATTTCTTTCGCGA 2685498 30 100.0 36 TCTTTCGCGA .............................. TTACACTTATAGGCGAATACAAGGGAATTAATATTA 2685564 30 100.0 37 ATTAATATTA .............................. GCGCAGTGACGTTTGAGCCTGTGAAATTCACAATTGC 2685631 30 100.0 37 TCACAATTGC .............................. GCGCAGTGACGTTTGAGCCTGTGAAATTCACAATTGC 2685698 30 100.0 36 TCACAATTGC .............................. TGATCGTGTTTGATACGACAGGGCAATACATATCTG 2685764 30 100.0 37 TACATATCTG .............................. GTCAATAATTACGTGCAAGAGCACGAGGTTATACTCT 2685831 30 100.0 36 GTTATACTCT .............................. TGTGGGAATCATATCGTAGCTTTTGCTCTTGCCGGC 2685897 30 100.0 36 TCTTGCCGGC .............................. AAATACTTTGCGCATAGACGCTATGCCCAAAATTAT 2685963 30 100.0 35 CCAAAATTAT .............................. CGAACAATTTCTTCGTATAAACCCGAATATAACAC 2686028 30 100.0 37 AATATAACAC .............................. ACTCTAATATCATCACTTTCGCTATATGTAGACCCCA 2686095 30 100.0 36 GTAGACCCCA .............................. GGCTAACGCCTTTTATGAAAGTCAGGGTGAGCCAAG 2686161 30 100.0 35 GTGAGCCAAG .............................. GAAGTCATAAAGCACTTTGAATGCGCTGTCATTGA 2686226 30 100.0 35 CTGTCATTGA .............................. CCACCTGCAAATGTTTCCGAATAGCCATCAATCAG 2686291 30 100.0 37 CATCAATCAG .............................. CCTTAAAAAGCCTTGACCGGCAATACTTTATTTGCAC 2686358 30 100.0 34 TTATTTGCAC .............................. TCGATACCGGCCGGGCAAAAGGAAATTGGCAGAT 2686422 30 100.0 38 ATTGGCAGAT .............................. TATTTTCATCATTGTCTTTATCCATGTTCGTTTTTACA 2686490 30 100.0 36 CGTTTTTACA .............................. CGTACGCAAAATTTGTCGCTGATATTGCAGAAAAGC 2686556 30 100.0 37 GCAGAAAAGC .............................. TCATATCCAAAACATTGTATCACCCAAAAACGGCTCA 2686623 30 100.0 37 AAACGGCTCA .............................. AATCTGTTGTTGAAGATTCAAGTTTTAAAGTAAAATC 2686690 30 100.0 34 AAGTAAAATC .............................. GAGTTTTCGCAACGCGCTTGCAAACGCATCGCGA 2686754 30 100.0 35 CGCATCGCGA .............................. CTGTTCTTCAGTTAAATCCTCAGCTTTTTTTACCC 2686819 30 100.0 37 TTTTTTACCC .............................. CTGAACAAGTGATTTATTTCGATGGCTATTCTGAAGA 2686886 30 100.0 37 ATTCTGAAGA .............................. GCGCAGTGACGTTTGAGCCTGTGAAATTCACAATTGC 2686953 30 100.0 35 TCACAATTGC .............................. TGTAACCGACAAAGCCCCTATGCACGACAGTATGG 2687018 30 100.0 37 GACAGTATGG .............................. GGTGTTTTTCCAGATCAGAGAAAACGATTTTATCGCG 2687085 30 100.0 36 TTTTATCGCG .............................. TTTGAGAAAAGACGCGCTTGGTAATATTTAAAAACA 2687151 30 100.0 36 TTTAAAAACA .............................. GTGTAGGTGGCTCATCCCTGAACACTGTTCCTCTTT 2687217 30 100.0 37 GTTCCTCTTT .............................. TGGGTTAAAATTTCATTCAGCTAATTGTCAGGCTCTT 2687284 30 100.0 37 TCAGGCTCTT .............................. TCGAAGTAGTAATTGAGCCAACTGTATTAGAACAAAT 2687351 30 100.0 36 TAGAACAAAT .............................. CCGGTAATAGCATCAATAATCATTCCAGCAAAGTTC 2687417 30 100.0 36 AGCAAAGTTC .............................. TAAATCCTTTAGTTATCACGCTGCTTGATTTAGCCC 2687483 30 100.0 36 GATTTAGCCC .............................. CATTGTGATCTCAATTGTTCCGTCGCCCTGAATTTC 2687549 30 100.0 35 CCTGAATTTC .............................. ACGATTAAAATCACAAACTGAGATAAACAAAATTG 2687614 30 100.0 37 AACAAAATTG .............................. CAGTGTTTGAAACTTTCTATGAAGAAACAATAGAAAA 2687681 30 100.0 36 CAATAGAAAA .............................. GGATCACGCCGCCTTTGTTCAATTTATTTGAACCGC 2687747 30 100.0 35 TTTGAACCGC .............................. TCGTCTATTATGTCGTCGTTTAAATCAATATAATC 2687812 30 100.0 35 CAATATAATC .............................. CATTCCTTTCCTGTTTGTTTTGTTGTTGAACCCGC 2687877 30 100.0 36 TTGAACCCGC .............................. TCCACCCAAAATCATGTTTTCTGCATCTACAACGAT 2687943 30 100.0 35 CTACAACGAT .............................. TGGGTGATTGAAAACTATTCTAATACTGCAAAAGT 2688008 30 100.0 36 CTGCAAAAGT .............................. TTCGTGAGGCAAACCTTAGTGGGGCAAAACTTGAAT 2688074 30 100.0 36 AAACTTGAAT .............................. AAATTCCCATACATGAAAGCACGCTCGATTTCAAGA 2688140 30 100.0 36 GATTTCAAGA .............................. GAAAAACTTGGTTTTATAAAGAAAAACCGCATCGGA 2688206 30 100.0 37 CCGCATCGGA .............................. GTTATTTGTCTCTCGGCAGGTTCAAAGCTTGTCCCGG 2688273 30 100.0 36 CTTGTCCCGG .............................. CTTAGAAAAGCCAAACCCGCAGCATAACCGATACAA 2688339 30 100.0 35 ACCGATACAA .............................. CATTCCTTTCCTGTTTGTTTTGTTGTTGAACCCGC 2688404 30 100.0 36 TTGAACCCGC .............................. ATTTTTTGTTTATATTACGTACACAGCATGATGCTG 2688470 30 100.0 36 CATGATGCTG .............................. GCTCCCCACGTTGGTGCGGTTATTGAGCTAATTGTC 2688536 30 100.0 36 GCTAATTGTC .............................. AATTCGCTTTATGAAGAAAGAGGGATGGACTTACAT 2688602 30 100.0 37 GGACTTACAT .............................. AAAAATAAATCAGGGCAGGTACTGTCCAATGAGCCTA 2688669 30 100.0 36 AATGAGCCTA .............................. CAACAGGCGAAACCATGACTGATTTTCTCAGAATAA 2688735 30 100.0 37 CTCAGAATAA .............................. TTATATTGATCTAATACCCTTATGTTATCTGATACAA 2688802 30 100.0 36 TCTGATACAA .............................. TCTTTCTGCAAATCTATAAACCACAGCATCATGCTG 2688868 30 100.0 36 CATCATGCTG .............................. TCTGTTGAGTTGTTTTGGTGTTCTTCAAGTTTCGCA 2688934 30 100.0 36 AAGTTTCGCA .............................. CGCCCGGCACTGGATTTAGAATACATAAAGAACCGA 2689000 30 100.0 35 AAAGAACCGA .............................. AAATATGGCAGAAAAACTTTCTTTTTGTATGAAAT 2689065 30 100.0 37 TGTATGAAAT .............................. CAGTGTTATCCTTGTACTCTATTTCTTCATGAACCAC 2689132 30 100.0 37 CATGAACCAC .............................. CAGTGTTATCCTTGTACTCTATTTCTTCATGAACCAC 2689199 30 100.0 35 CATGAACCAC .............................. CCATGATCGACTTTTCAGTGCTTCTGCTAACTTGT 2689264 30 100.0 35 GCTAACTTGT .............................. CAGGCTTCTCCGCTGGCTCCGCGTCGGGCTTCTCG 2689329 30 100.0 35 GGGCTTCTCG .............................. TTTTTCCGTCTGCTCCCGATTTCAACTTTCTATTT 2689394 30 100.0 36 CTTTCTATTT .............................. CTGAACCGCAGGCGTTAGATTGCTCGAATGAAGGCA 2689460 30 100.0 36 AATGAAGGCA .............................. AAGGCTTATTTCCAAATAAAAGACGGCTCAGGTAAT 2689526 30 100.0 36 CTCAGGTAAT .............................. CTATTCGATTATTTACAGCGAGAATCATGAAAGCCT 2689592 30 100.0 36 ATGAAAGCCT .............................. GAGATTTAAAATGAAAGTATCAAAAGACACATCAAA 2689658 30 100.0 37 ACACATCAAA .............................. TTTGTGTGTGTGATATTATACAGAGGAGCCGATCCTG 2689725 30 100.0 36 GCCGATCCTG .............................. TATTGATAGCGTGAAAGTTTATTTTGTAAAATCTGA 2689791 30 100.0 37 TAAAATCTGA .............................. AGAATTGAGAGACCTCATAAACCGTTTGCCTGAAGAG 2689858 30 100.0 36 GCCTGAAGAG .............................. TTTTTTTACAAGCTAACAATTAAACTTTAATCGAAA 2689924 30 100.0 36 TTAATCGAAA .............................. TTTTAATTTTTTTGTATAAAAATCATGTCAAGAAGT 2689990 30 100.0 37 GTCAAGAAGT .............................. ATCTGAAACAGCAATTTAAAAAAGGGGAAATAAAATA 2690057 30 100.0 38 AAATAAAATA .............................. GCTTATATGCTCGCCTGTATTTCGTATATATATGTGTT 2690125 30 100.0 36 TATATGTGTT .............................. TTGTGGATATCCATACGTTCTTTTTCCACTTTCATA 2690191 30 100.0 36 CACTTTCATA .............................. TAATGGGATTTTTTCGTTAAGAAACGTACAGACGCA 2690257 30 100.0 36 TACAGACGCA .............................. CGATGAAATAGTTCAACATCTAAATAATAATCTACA 2690323 30 100.0 36 ATAATCTACA .............................. TCTAAAATAGGTATTCTCACAATTGTGCCCGCCGAG 2690389 30 100.0 36 GCCCGCCGAG .............................. CCGAGAAGAAAATAGAAAAACATTTGGTGAGATCTG 2690455 30 100.0 36 GTGAGATCTG .............................. CTCAAAATGAAAACGGCCAATACCCCTGCAAATTTT 2690521 30 100.0 37 TGCAAATTTT .............................. TTATTGATAGCGTGAAAGTTTATTTTGTAAAATCTGA 2690588 30 100.0 37 TAAAATCTGA .............................. ACTTAGAAAAGCCAAACCCGCAGCCCAACCGATACAA 2690655 30 100.0 36 ACCGATACAA .............................. CCTTAGCTGGGCAGACCTCACTGAGGCAAACCTTAG 2690721 30 100.0 36 CAAACCTTAG .............................. TCTTCCTTTTTGAAAATAAAAAAGGGTGGTAGCTTG 2690787 30 100.0 36 TGGTAGCTTG .............................. TCTTGAAGGACTGAGTCGCTAAGGTTTGCGCCTTGA 2690853 30 100.0 36 TGCGCCTTGA .............................. CAGTGAATTCAATGAATTCTTTATCATCAAAATCTA 2690919 30 100.0 37 TCAAAATCTA .............................. GCGTATCCCCCACACCAGAATGAATAAAAAGCCCGCG 2690986 30 100.0 36 AAAGCCCGCG .............................. TAAGGTCAAAAGTTTTAAATTTATTTGCCCCTCCGC 2691052 30 100.0 37 GCCCCTCCGC .............................. GCTCTAAGCAAAATATCCGCCTTGTTTTCGCTCGGCT 2691119 30 100.0 37 TCGCTCGGCT .............................. CAATCTCCTCGCCGGGTAAAAGAGTATAAGCAGAACC 2691186 30 100.0 37 AAGCAGAACC .............................. GCGATATATCCACTGACATTCTCAACGCCCTTGCCAA 2691253 30 100.0 37 CCCTTGCCAA .............................. AAGACCTGGGTTAAAATTGATACTTACGGAGGATCTT 2691320 30 100.0 37 GGAGGATCTT .............................. GAGCCGCAACCGCACCTCGAAAATTAGTACTGAGATT 2691387 30 96.7 37 TACTGAGATT ....T......................... AAGACCTGGGTTAAAATTGATACTTACGGAGGATCTT 2691454 30 100.0 37 GGAGGATCTT .............................. GAGCCGCAACCGCACCTCGAAAATTAGTACTGAGATT 2691521 30 100.0 36 TACTGAGATT .............................. TTTTAGAGGTAGGGAGCGGAACAAAGACAATACGCG 2691587 30 100.0 36 ACAATACGCG .............................. TGCTTTAACGCATCGCCTGAACGCGAAAACGCATAT 2691653 30 100.0 37 AAACGCATAT .............................. AAGATGAAGAAAGCTCAATAAAGACAGCAGCCGAAAC 2691720 30 100.0 35 CAGCCGAAAC .............................. ATCTGAGCGTATTATACTCAGGTAAGTTTAATTTC 2691785 30 100.0 37 GTTTAATTTC .............................. AAAAACCCGGACGCACCAATCAAGGTGGCCGGGTTTG 2691852 30 100.0 36 GCCGGGTTTG .............................. TCGAGCGGGTCGTGGATGGTGACACGCTCATCGTAC 2691918 30 100.0 35 CTCATCGTAC .............................. TGGCGCTGGGGCGGGCGTGGACTCTGCTTGGGAGC 2691983 30 100.0 36 GCTTGGGAGC .............................. CAGAGCCGAAACCAGAGCCACCAGCGGAGAAGCCCG 2692049 30 100.0 36 GAGAAGCCCG .............................. ACGCTGGGGATTCTGTGGCATTTTCAAGCATTTTTC 2692115 30 100.0 36 AGCATTTTTC .............................. ATTTTTTGTAGTGTTCTTTGTTGTTGTTGTAGACAG 2692181 30 100.0 36 TTGTAGACAG .............................. AAAATAGATCAAGAATCGGGAGCAGGTTGAAAAATA 2692247 30 100.0 36 TTGAAAAATA .............................. AGCACTTGCGATGTTGATAACTGTGTTGATAACAAG 2692313 30 100.0 36 TGATAACAAG .............................. AAAATGACTTTATGAAAGAAAAGAGAATTTTCGTTT 2692379 30 100.0 36 ATTTTCGTTT .............................. CATTCAAGTTTTGCTCTGCAAATGTTTGCCTCGCGA 2692445 30 100.0 35 TGCCTCGCGA .............................. AAACACGGCGAATCCATCCGTCTCTGGAGGTTTAA 2692510 30 100.0 36 GGAGGTTTAA .............................. CACCAAACGCCACTTCAGCCCTAACATATCTCTTAC 2692576 30 100.0 36 TATCTCTTAC .............................. CTTCGTCAGTCTGAACCTGCCAACGTTTTGCTTCCC 2692642 30 100.0 36 TTTGCTTCCC .............................. ATGAACCGTATTACTTCCCGAAACCGCCTCAAATAC 2692708 30 100.0 36 CCTCAAATAC .............................. CGCAGGGCGCTATGCAAAGCCGTGCGAATGTGGGTA 2692774 30 100.0 36 AATGTGGGTA .............................. ATGAACCGTATTACTTCCCGAAACCGCCTCAAATAC 2692840 30 100.0 36 CCTCAAATAC .............................. CGCAGGGCGCTATGCAAAGCCGTGCGAATGTGGGTA 2692906 30 100.0 37 AATGTGGGTA .............................. TGTAGTCAATAACGACTACACCAACAAACAAAACAAA 2692973 30 100.0 36 ACAAAACAAA .............................. AAAGATTGATGAGGAACATATTGATTCTTTGTCAAT 2693039 30 100.0 37 CTTTGTCAAT .............................. TATCTTCTGCGTTCGTAAAGTTATAAGCCGTACCGAC 2693106 30 100.0 37 CCGTACCGAC .............................. TTGTCCTGGAAATGGGACTTGTGGAACACAAGACATC 2693173 30 100.0 35 ACAAGACATC .............................. AGGATTAATACAGCCGTCGGACTTAAAGATATTTC 2693238 30 100.0 36 AAGATATTTC .............................. AAAACATAGGGTTTGTCAGTATCGTCGGTGATGACG 2693304 30 100.0 35 GGTGATGACG .............................. GTCATCCGCTCTACCGACTTGGCATATAAATCCGA 2693369 30 100.0 38 ATAAATCCGA .............................. TTCGATAGTAGCTGTTGGGTAGTTTGGGATAAAGACAA 2693437 30 100.0 36 ATAAAGACAA .............................. CCTTCTCGACTCAGACCTTCGAGACTCAGACCTTCG 2693503 30 100.0 37 CAGACCTTCG .............................. AAAGAAGTAAAGATGAATCGAGTGCAATATTCACAAA 2693570 30 100.0 35 TATTCACAAA .............................. CTCATTTTTAAATAAAGTTTCTGCCGTTATTGGAA 2693635 30 100.0 37 GTTATTGGAA .............................. TCACCACAGTCCGTTCATACCAAAAAAAAAACTTAGT 2693702 30 100.0 35 AAAACTTAGT .............................. ATGTATATACCTGTTTTTTTCTTCCAAAAAAAATA 2693767 30 100.0 35 AAAAAAAATA .............................. ATCTTTCCAGCTATACCTCATTGCTTTTAATGCTT 2693832 30 100.0 36 TTTAATGCTT .............................. AGTGAGTGAATTAGATATGCGACTTTCCTTAATCGC 2693898 30 100.0 35 CCTTAATCGC .............................. TACGACTCAAACTTTGCAAGTGATACTTATGTCGC 2693963 30 100.0 36 CTTATGTCGC .............................. GCCTTAATGGAGTGAAGTCCATTGCGCCATCATCAC 2694029 30 100.0 35 CCATCATCAC .............................. CTCAGATTTAAAAAAAGAGAGTCCTGCATAATAGT 2694094 30 100.0 38 GCATAATAGT .............................. CAATTATTTGAACTTATTGAAATTGGCGAAATAATTAG 2694162 30 100.0 36 AAATAATTAG .............................. CCGTTGCCGGAAGACCTAAGTCCATACCGGCACTAA 2694228 30 100.0 37 CCGGCACTAA .............................. AAGGTATTAATTACATCGCATGTTGATTGATGACCAA 2694295 30 100.0 36 TGATGACCAA .............................. ACTTATCCACCGTTACTTCGTTGGGAGTTTTTGTTT 2694361 30 100.0 37 GTTTTTGTTT .............................. CCTCACTTTTAGCGAAATGTATCGATGCTCGAATCGA 2694428 30 100.0 36 CTCGAATCGA .............................. ATCCGCGAGGCCGTGTTCCCCCGGCGGCTTCATCAG 2694494 30 100.0 GCTTCATCAG .............................. CCGTCCAAAA ========== ====== ====== ====== ========== ============================== 161 30 36 GTTTCAATTCCACATTGGTGCAATTAGATG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.90,-3.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [67,486] Score: 0.18/0.18 # # Final direction: R [0,5.46 Confidence: HIGH] >NC_011026 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2815328 30 100.0 37 ATAAAAATTA .............................. TCAAATATTACTGACGTCTGGCAACACGGGCATCGCA 2815395 30 100.0 36 GGGCATCGCA .............................. GAGCGATAATTTGCGCGGGATTTGCCAAGTTTGGCG 2815461 30 100.0 37 AAGTTTGGCG .............................. AAATTCAACTCTTTGTATCCTGACGTGCTTTCAAAAG 2815528 30 100.0 37 CTTTCAAAAG .............................. AGTAACTTACACGATGTGAGCCTAAAACAACTTTAAA 2815595 30 100.0 35 CAACTTTAAA .............................. TAGAGCCTTTGAACAACCGGCCTCCGTGGAAAAGA 2815660 30 100.0 36 GTGGAAAAGA .............................. TTCCTCGTTCGTAGTCCCGAAAAAAACGCAGCTTCG 2815726 30 100.0 37 CGCAGCTTCG .............................. TAGATCGCACGGTGTGCCCTGACGAGTACGAGGCTAT 2815793 30 96.7 37 ACGAGGCTAT ....T......................... TTCTCCGCGTCGGGCTTCTCCGCTGGCTTCTCCGCGT 2815860 30 100.0 36 TTCTCCGCGT .............................. TGTTTTGAATTTCATCCATATCAACAAAACAACTCG 2815926 30 100.0 37 AAACAACTCG .............................. CGCTGTTATCGTCCGTGCTTCGCTAAGCCTGCCACTT 2815993 30 100.0 35 CCTGCCACTT .............................. TTCGCCACATTCCAAAACAAAAACTCCCGAAGTAA 2816058 30 100.0 37 CCCGAAGTAA .............................. CGCTGTTATCGTCCGTGCTTCGCTAAGCCTGCCACTT 2816125 30 100.0 36 CCTGCCACTT .............................. TTTCCGTGCGAAGTTTTTACGCCGCCGCTGAACCGC 2816191 30 100.0 37 GCTGAACCGC .............................. CCTTGTTTTTCCAAGTGCTCCCGTTTATTTTTGTTTT 2816258 30 100.0 35 TTTTTGTTTT .............................. CCAGTTTCGGAAGGTTGGGTGTTTCAGAAATCGAG 2816323 30 100.0 36 AGAAATCGAG .............................. TGAAAGACATTTTTTGCTTGATAAAGTCTGTCGCAG 2816389 30 100.0 35 TCTGTCGCAG .............................. CGACTTATCCACACTCACAATAGTAACTCGATTTT 2816454 30 100.0 36 ACTCGATTTT .............................. TGACATAGAGATATTCCTTAAAGAACTCCCAAAAGG 2816520 30 100.0 37 TCCCAAAAGG .............................. GCGTATTTCCTTTTTCGCGCTATCATATCCAGCGCTG 2816587 30 96.7 37 TCCAGCGCTG ....................T......... TTAATATCTATGAATGCAAAAGAAACAAAGCATTCAT 2816654 30 100.0 36 AAGCATTCAT .............................. CCGCGAGACCGTATCAGGAATTAAAAAAGCTGATGA 2816720 30 100.0 36 AAGCTGATGA .............................. AAAATGAGCAATCGGATGAAAATAATGAGCAGTCAT 2816786 30 100.0 37 GAGCAGTCAT .............................. CTTGCTTCATAGAACTCATTGAGTATTCTATAAATAT 2816853 30 100.0 36 CTATAAATAT .............................. TCTGAAGGGTTTTTGATTTCAGATAGTAGCGGAGAC 2816919 30 100.0 36 TAGCGGAGAC .............................. AGCCATAGCACCTTGCAAAGTTGTAAAACCTCTAAC 2816985 30 100.0 36 AACCTCTAAC .............................. TGGGAATATATCATCTTCAATCCTTGTGAGTTTTCC 2817051 30 100.0 37 TGAGTTTTCC .............................. ACTATTAGCGTAATCAAAAAAAAATAAAAAAACCCGC 2817118 30 100.0 37 AAAAACCCGC .............................. TTAAACAGCTTGAAAAAAATGTGTTTTTAATTGAAGA 2817185 30 100.0 37 TAATTGAAGA .............................. TAAGTGGTGTAGAAGCAATGATAATTTTTTTATCAAA 2817252 30 100.0 37 TTTTATCAAA .............................. CCATCAATGTAAAATACTCGGTAGATACCGGAACGGT 2817319 30 100.0 36 CCGGAACGGT .............................. AGATTAGCCAACCCAACCATTATACCGGTTATGTTG 2817385 30 100.0 35 GGTTATGTTG .............................. AATGGAGAGATGATGTTTGCCGTACTTCCGACACC 2817450 30 100.0 36 TTCCGACACC .............................. GGTGACGCTTTCACGCCTTAATGGAGTGAAGTCCAT 2817516 30 100.0 34 TGAAGTCCAT .............................. CGGGAACCGGCCATTTTAAAAGATAGATTTCATA 2817580 30 100.0 36 AGATTTCATA .............................. GTCTTTTTCGCAAGTGGAATTACCGCTTTCTGTAAA 2817646 30 100.0 36 TTTCTGTAAA .............................. GTTCTTTGTTGTTGTTGTAGACAGCGCGAAAAATGT 2817712 30 100.0 37 CGAAAAATGT .............................. TCTCGCGGAACAGCGGAATGATTAGCGCTGCTGCTTC 2817779 30 100.0 35 CTGCTGCTTC .............................. TCCGCTGTTCCGCGAGAAGCCCGCAGAGCCACCAG 2817844 30 100.0 36 GAGCCACCAG .............................. TCGAGCACAAATACATCTCTATGAAAATTCGCAAAA 2817910 30 100.0 36 ATTCGCAAAA .............................. GAAGCCAAAAACGGGCTAACAAAGCGTGCAGCCGAC 2817976 30 100.0 35 TGCAGCCGAC .............................. ACGGACTACTACGCCCCCGAACTAAACGAAATCGG 2818041 30 100.0 36 ACGAAATCGG .............................. TAATTTCGCCACATTCCAAAACAAAAACGCCACGCG 2818107 30 100.0 38 ACGCCACGCG .............................. TGAAGCTTTTCGTCGACTTGATTGGGATGAATTGCCGA 2818175 30 100.0 36 GAATTGCCGA .............................. GTAGTCAATAACGACTACACCAACAAACAAAACAAA 2818241 30 100.0 37 ACAAAACAAA .............................. CGGGCATGAAGTGATGAGACGCGACAGCCCGGCCTTT 2818308 30 96.7 38 CCCGGCCTTT .........................G.... GCAAAGATGACATTGGCGACGCCTGTAACAGCAGCTAT 2818376 30 93.3 35 CAGCAGCTAT .....................GG....... AATCGGAAAAGACGGTTATGTATATTATAGCGCAA 2818441 30 100.0 36 TATAGCGCAA .............................. GTATAGAGTTAGAAACGGTGGAACATTCAATCAGTC 2818507 30 100.0 35 TCAATCAGTC .............................. CGCTGGCGTGGATTATGCGCCGACGGCTGAGTATC 2818572 30 100.0 37 GCTGAGTATC .............................. GTTAAATATGCTTTTGACAAGATACTAAGCTATTTGG 2818639 30 100.0 37 AGCTATTTGG .............................. AAAGTCTTAATATGACTGATGCTGATGTATTAGAAAT 2818706 30 100.0 36 TATTAGAAAT .............................. ACTCTGTTATTATACATACTCAAAGATATTTATAGA 2818772 30 100.0 36 TATTTATAGA .............................. ATGAAACCGAAGTTGAAACCATCCCGAACGCAAAAA 2818838 30 100.0 36 AACGCAAAAA .............................. ATATCAAAAGAAAGAAAAGAAACCGAAATGGCAAAC 2818904 30 100.0 36 AATGGCAAAC .............................. CGTTGGCAGGTTCAGACTGACGAAGAAGTGAAAGAA 2818970 30 100.0 36 AGTGAAAGAA .............................. TTCGCACAAGCTATTCTGCTGCTACCACTCCCCACG 2819036 30 100.0 35 ACTCCCCACG .............................. CACTCCTATTTTCTACCATTTCCCATTCACTTTAC 2819101 30 100.0 36 TTCACTTTAC .............................. TCAAAATTATTTGTGACTACTTTCATATTTACTTTT 2819167 30 100.0 37 ATTTACTTTT .............................. CTGAATTTGCTAAAAAGGTACTGCGCTCCAATGCCAC 2819234 30 100.0 36 CCAATGCCAC .............................. AAACGTGCGCGTGACGCGCAGAAGGGAAAATTAAAA 2819300 30 100.0 38 AAAATTAAAA .............................. CTGTTATCATCGCTGTTGCTTCAAAGCCTGCCACCTTT 2819368 30 100.0 35 TGCCACCTTT .............................. GCACTTATCAACACACTTATCCACCGTTACTTCGT 2819433 30 100.0 38 GTTACTTCGT .............................. CTCTTATCATCGCTGTTGCTTCAAAGCCTGCCACCTTT 2819501 30 100.0 35 TGCCACCTTT .............................. CAAGTTTTCAACACACTTATCCACCGTTACTTTGT 2819566 30 100.0 GTTACTTTGT .............................. CCGTTACAA ========== ====== ====== ====== ========== ============================== 65 30 36 GTTTCAATTCCACATTGGTGCAATTAGATG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.90,-3.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [71.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [102,219] Score: 0.18/0.18 # # Final direction: R [0.68,5.05 Confidence: HIGH] >NC_011026 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2813147 30 100.0 36 TTCTATTAGA .............................. TGTTTTTTCCCAATAATTAAAACCTGATATATCCCA 2813213 30 100.0 36 ATATATCCCA .............................. TGTTTTTTCCCAATAATTAAAACCTGATATATCCCA 2813279 30 100.0 36 ATATATCCCA .............................. AGCCATAGCACCTTGCAAAGTTGTAAAACCTCTAAC 2813345 30 100.0 36 AACCTCTAAC .............................. TTCTCGGCCTGCTTGGCCTTGCCGGATACCGGACTT 2813411 30 100.0 38 TACCGGACTT .............................. TTTGGAAAAAGAAAGTTACTGAATACAGCTTGTTGGAT 2813479 30 100.0 37 CTTGTTGGAT .............................. AAGCGCAGGGACGGAAAGATTAAATTCATGTTTTTTC 2813546 30 100.0 37 ATGTTTTTTC .............................. CCTCCGATTCTTAATGAATACGAAGAATCTGTTAATC 2813613 30 100.0 37 TCTGTTAATC .............................. TTTGTTTAATCGGCCAGCCTTCTTCCAATTCCTGATC 2813680 30 100.0 36 ATTCCTGATC .............................. TCATTCATCTTCTCAGTCAACTTCTCAATCTTCTAA 2813746 30 100.0 34 AATCTTCTAA .............................. CACTTGTGGTTAATGACTCTATCACGTCTGTGAA 2813810 30 100.0 37 CGTCTGTGAA .............................. GGAATTTGGATTTAAAAACAGTTGCCATGTCATTATC 2813877 30 100.0 36 TGTCATTATC .............................. AGTTGAAATACCTGTAATTTCAGGTAACAGTATTCG 2813943 30 100.0 36 ACAGTATTCG .............................. GAGCGAAATATGTACGAAATCTGGTATAAAGACAGA 2814009 30 100.0 33 TAAAGACAGA .............................. TGGATAGTAAATATCTCGCACAAGGGAGTAAGT 2814072 30 100.0 36 GGGAGTAAGT .............................. GGCTGTAAATAAAGCATTAATTGTATCAGGTGCGAG 2814138 30 100.0 35 CAGGTGCGAG .............................. TTAAAACTTTCATGTTGCTGCTAAAAAATAAGTTA 2814203 30 100.0 36 AAATAAGTTA .............................. TCTAAACACATTCTTACCATTTCCACCGCCGCCTTG 2814269 30 100.0 36 CGCCGCCTTG .............................. TGTTATTTGAAAGCGATTCAGTAGTGGTATCCAAAT 2814335 30 100.0 35 GTATCCAAAT .............................. CAAGTTATCAGATGCCGAAATCTGGGCTTATTTGA 2814400 30 100.0 36 GCTTATTTGA .............................. TGTGCAATCTAAATCGTAATTTTTTTCTGCAAAAAC 2814466 30 100.0 38 CTGCAAAAAC .............................. CGATTCCGGCGTATCCGAAAACGACTATTCGTTCATCA 2814534 30 100.0 39 TCGTTCATCA .............................. AAGCTCAATAAAAACAGCAGTTTCGGCTGCTGTAAAAAA 2814603 30 100.0 35 CTGTAAAAAA .............................. ACCAAGTTCGATCATGTATTTCTTAACCCATTCTT 2814668 30 100.0 36 ACCCATTCTT .............................. CTTTTCAACCTGTTATATGAAATCAAAGACGGCTTC 2814734 30 100.0 37 AGACGGCTTC .............................. CAAGCTAAATTAAGCAATTTGTTGTGCGAGTGTTTTT 2814801 30 100.0 36 GAGTGTTTTT .............................. CCTTGAAGGTGTGCGCCTTGAAGGTCTGCCTCGCGA 2814867 30 100.0 37 TGCCTCGCGA .............................. CTTTGCCCACTCGTGCCGGAGTCGACAGAAAACTTTG 2814934 30 100.0 36 GAAAACTTTG .............................. AAAATGACTTTATGAAAGAAAAGAGAATTTTCGTTT 2815000 30 100.0 36 ATTTTCGTTT .............................. AATCAAAAACATTCGCCATTCGATTCGAGATTCGAG 2815066 30 100.0 35 GAGATTCGAG .............................. ACTTGGGTCAATAGAACCGGCTCTTACCACCGCTT 2815131 30 100.0 36 ACCACCGCTT .............................. GTTCTTTGTTGTTGTTGTAGACAGCGCGAAAAATGT 2815197 30 100.0 CGAAAAATGT .............................. TTTTCCGAGAC ========== ====== ====== ====== ========== ============================== 32 30 36 GTTTCAATTCCACATTGGTGCAATTAGATG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.90,-3.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [722,103] Score: 0.18/0.18 # # Final direction: R [0.45,4.87 Confidence: HIGH] >NC_011027 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 87152 35 100.0 40 NNNNNNNNNN .CTT.G......A...................... ACGTGTACCATGCAAAGGCCCAGGCGACGAACTATGACTT 87227 35 100.0 40 NNNNNNNNNN ...............G................... AGAAACCAGTACTTGAATCACTCAAACGATACGCAAAGTT 87302 35 100.0 36 NNNNNNNNNN ................................... GTTGCAGGCGTGGCGAGACGGCTTTTCCGTCGAAGG 87373 35 100.0 38 NNNNNNNNNN ............A...................... CATTGGATACGTAACTATCAGGGGGCGGGAATACCGAT 87446 35 100.0 39 NNNNNNNNNN ................................... GTATGCTGATGTGTCGCTGCCGGAGCTTCAGAGGGAGCT 87520 35 100.0 41 NNNNNNNNNN ................................... TTTCGGGTTTGTGATTCCGTCAGGTACGGTGTCAGAGGACG 87596 35 100.0 40 NNNNNNNNNN ................................... CAGAATGCTATCGATAGCATCGATAGATAGCGTCCGACAA 87671 35 100.0 39 NNNNNNNNNN ................................... CGTCGGTGATGATGGAACGCAGTATTGGCCAATCTTCAT 87745 35 100.0 37 NNNNNNNNNN ................................... CCGTATGTCAATTACCGCATCCACGTGGTCGGCACTG 87817 35 100.0 35 NNNNNNNNNN ................................... CGTGGTATTTCGAACTGACGAGGCGGCTCGAAAGG 87887 35 100.0 39 NNNNNNNNNN ................................... TATCGAGATCGGCACGCTCATGGGCGGCCTGACGAAAGG 87961 35 100.0 41 NNNNNNNNNN ................................... CCCTTGCCTAACCCTGACGATTGTCCGGTAATTCCAGTCAT 88037 35 100.0 40 NNNNNNNNNN ................................... CCCCTGTCTGCAGAACGCCGAATATCGTCTGCATTTGGCT 88112 35 100.0 38 NNNNNNNNNN .CT.T.............................. AATGAAAAAAATGAACATCGCCACTCTCTTTTTCCTGC 88185 35 100.0 38 NNNNNNNNNN .CT.T.............................. CACTCCACCATATCCGAACGCACCAAACCACCCGGATA 88258 35 100.0 39 NNNNNNNNNN ................................... CGCCTACGCATTTCGCCTCGCGCTTATATCGGTAGGCAT 88332 35 100.0 1 NNNNNNNNNN ................................... NNNNNNNNNN ========== ====== ====== ====== ========== =================================== 17 35 38 GTCGCAATACGCTAAAGCGTGCAATGAAATGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.70,-3.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [58.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [787,252] Score: 0.18/0.18 # # Final direction: F [0.82,0.41 Confidence: MEDIUM] >NC_011080 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3054861 29 93.1 32 GGTGAAACGT --........................... GATGAGCAACACGCCCGCACTGGCGTAACTTA 3054922 29 100.0 32 GCGTAACTTA ............................. CGTTGGCTGGAGATATGGGAGTACCTTTGGAA 3054983 29 100.0 32 ACCTTTGGAA ............................. ATATCCAGCCTGCGATAGAGATAGTTTTCCGG 3055044 29 100.0 32 AGTTTTCCGG ............................. GAGGTGGCAAAATATTGTCAGCGGGATTTTTT 3055105 29 100.0 32 GGGATTTTTT ............................. TTTACCAATCTGTAAATATTTTTCATCTGCTG 3055166 29 100.0 32 TCATCTGCTG ............................. AGTTCGCTCTCGATCGTCGCGGCATACATCGC 3055227 29 100.0 32 CATACATCGC ............................. GATTGCACAGGGGGTGAGTATGGAACAGCTGA 3055288 29 100.0 32 GAACAGCTGA ............................. AATACTGACGTGTTTCACGCTGCTGCCGTCTG 3055349 29 100.0 32 CTGCCGTCTG ............................. CCAACAGTAATTGCAAAATCCTGTTGTTTAAT 3055410 29 100.0 32 GTTGTTTAAT ............................. GGGATCAGCACCGACAACCTAAAACCACTGTT 3055471 29 100.0 32 AACCACTGTT ............................. TGTGTCGGAATATGCGGGCTGATTTTCGTCTG 3055532 29 100.0 32 TTTTCGTCTG ............................. TTTTAATTAATGAGAATTAGACGCAACATTGT 3055593 29 100.0 32 GCAACATTGT ............................. TTTACAATTACGGTCCCTATTCCCTCAGTCCT 3055654 29 100.0 32 CCTCAGTCCT ............................. CGCGCACGGCGTTTGCCCTCGTCGGTTATTGG 3055715 29 100.0 32 CGGTTATTGG ............................. CTGATTGTCAAAATCAAAAAACAGGCCGAGTC 3055776 29 100.0 32 AGGCCGAGTC ............................. GAGCGAAGGTGCAACATTATCACCATATTCGG 3055837 29 100.0 32 CCATATTCGG ............................. AATGTTTCCCGCACCCAAATGCGATCGCCAGG 3055898 29 100.0 32 GATCGCCAGG ............................. AATGATAAATTATCCGTTACCGCAATAACAAT 3055959 29 100.0 32 CAATAACAAT ............................. CCTGCGTAGTTGATCACGATTTCCGGGATAAT 3056020 29 100.0 32 CCGGGATAAT ............................. TTTTTTCTTCGGTGCCCAACCGCAGCCTAACG 3056081 29 100.0 32 CAGCCTAACG ............................. TTATAGAGTTGACTCAAATTCATTTTTATTCC 3056142 29 100.0 32 TTTTTATTCC ............................. TAGCCGGGTCTGTATCGAATACCAGCCCCGCG 3056203 29 100.0 32 CAGCCCCGCG ............................. TAAAATTGGCATCATAGATGGTTTGATAGTCC 3056264 29 96.6 32 TTGATAGTCC ..A.......................... ATGCAATGGGGAATAAGTGGCGGGTAAATCAA 3056325 29 100.0 32 GGTAAATCAA ............................. CCGTCGCCGCACGCAAACAATCCGGGCGCCCA 3056386 29 100.0 32 CGGGCGCCCA ............................. TCAATAACCCCTTTTAAATACTGCCGTTCCAG 3056447 29 100.0 GCCGTTCCAG ............................. CCTAAATC ========== ====== ====== ====== ========== ============================= 27 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [18,84] Score: 0.18/0.18 # # Final direction: R [0,2.1 Confidence: HIGH] >NC_011080 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3073203 29 96.6 32 GCGCGATCCC ...............-............. TTGATGAAAGTTCATCTAATAATGATTGTGCT 3073264 29 93.1 32 TGATTGTGCT G...................A........ GAACCGCTTTTATTTTTAGACATAGAGCACCG 3073325 29 100.0 32 TAGAGCACCG ............................. GCCACCCGGACAACAAAATGAATCCCGATGAT 3073386 29 100.0 32 TCCCGATGAT ............................. TTCAAACTGCTTGCGGTAAGAAACTGTTGCAC 3073447 29 100.0 32 ACTGTTGCAC ............................. TGCACTCCCGACCGTTGAGGTGACAAAACCCT 3073508 29 100.0 32 ACAAAACCCT ............................. AACCCTTACGGTTATATGAAAGAAGATTTTTA 3073569 29 100.0 32 AAGATTTTTA ............................. CGGCATATCAGGAGTTGGAGCAACCAGCGAGA 3073630 29 100.0 32 ACCAGCGAGA ............................. TGACCTGAAGAAATAACATTGACTCCAAACTG 3073691 29 100.0 32 CTCCAAACTG ............................. GTTTTCTCTACATTTAGCTATAGACGTTAGTT 3073752 29 100.0 32 GACGTTAGTT ............................. TGGCCTGACTTTATCAAGCAGTGCATACTGAC 3073813 29 100.0 32 GCATACTGAC ............................. AAACTCTGGGCGCTCGAATGGCTGTCCTATTG 3073874 29 100.0 32 TGTCCTATTG ............................. TGGCGGTGTAAATTTTTACGTTTTTCATATCT 3073935 29 100.0 32 TTTCATATCT ............................. GAGACTTTTCACACTGATAATGTTGTTATTTT 3073996 29 100.0 32 TTGTTATTTT ............................. GTTGTCGCGGTAGTATTTAGTCGAAAGCATGA 3074057 29 96.6 32 GAAAGCATGA ....................T........ ACGGCCTGATTTAGAGTTAAACATGGTCACGC 3074118 29 100.0 32 ATGGTCACGC ............................. TACGGGTTGTACCATGCCACTGGCGTTTTGTG 3074179 29 100.0 32 GCGTTTTGTG ............................. ATGGCGTGTCTCGATTGCGCGCTGCCGCACTG 3074240 29 100.0 32 TGCCGCACTG ............................. TTCCCATTTAGCGAGTTCTTTTGCCGCCAGCA 3074301 29 100.0 GCCGCCAGCA ............................. ACTAAACGGA ========== ====== ====== ====== ========== ============================= 19 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [31.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [160,120] Score: 0/0.18 # # Final direction: R [0,1.92 Confidence: HIGH] >NC_011083 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3051278 29 100.0 32 GAACGCCCCT ............................. GCGAAATAGTGGGGAAAAACCCCTGGTTAACC 3051339 29 96.6 32 CTGGTTAACC .......................A..... TAGGCCTTGATACCATCGCTCGCACCTCGTCA 3051400 29 100.0 32 CACCTCGTCA ............................. GTTTATTACTGCTTAGTTAATTAATGGGTTGC 3051461 29 100.0 32 AATGGGTTGC ............................. TCTTTTGATTTTGCTGCGATGTTATAACCAGA 3051522 29 100.0 32 TATAACCAGA ............................. TATCCACATATACCCGCAATCATATTCAAGAA 3051583 29 100.0 32 TATTCAAGAA ............................. AATCACTGCGGGGGTATTTAGCGGAAACGGCT 3051644 29 100.0 28 GGAAACGGCT ............................. GATCGAGTAACGTGCGCTGGAACGCGTC 3051701 29 48.3 32 GGAACGCGTC ---------------.............. AATTAAAGCCGAGGGTGGCACCGCGCCTTATT 3051762 29 100.0 32 GCGCCTTATT ............................. GTTACGTTCGGTAAATGGAAAGCGGCGAATAT 3051823 29 100.0 32 CGGCGAATAT ............................. CCAGAAAGTGCCGGTAGTGCCTGATGAACGAC 3051884 29 100.0 32 GATGAACGAC ............................. CGCGCCCACTTCCGTAAAATACAGATAATCCA 3051945 29 100.0 32 AGATAATCCA ............................. ACCGTTCCGGTATGATCGAAGATACGGCAAAC 3052006 29 96.6 32 TACGGCAAAC ......................A...... GGCAGCGGGCGAGGCAAACACATTCGGGGCGT 3052067 29 100.0 32 TTCGGGGCGT ............................. GGTAATTTCTCATCTAACAGCCTGTACGCCTC 3052128 29 96.6 32 TGTACGCCTC A............................ GAATCTAATGCAACAGATGAATAAACACGTAA 3052189 29 100.0 32 AAACACGTAA ............................. TCTTTATCGTCAATGCGAAATTTTCCGCGACG 3052250 29 100.0 32 TTCCGCGACG ............................. TCCCATTCACCAACAACAATATCGCCCTGCAA 3052311 29 100.0 32 CGCCCTGCAA ............................. CGTTGCGTCAGGTTGATCCAGTGCGTCAGCGG 3052372 29 100.0 32 GCGTCAGCGG ............................. TGATGAAATCGTCAATAAAATTATTGGCGCGC 3052433 29 100.0 32 ATTGGCGCGC ............................. ACCACCGGAGCCATCGCCCAACACAGAGCCGC 3052494 29 100.0 32 ACAGAGCCGC ............................. GGCAAACCCGCAAGGCCCGTATATGGATTTAA 3052555 29 100.0 32 ATGGATTTAA ............................. AACCAATCCAGGCGATAAGAGGCGATTAAAGG 3052616 29 100.0 38 CGATTAAAGG ............................. TCTCGGTCTCGGTCTCGGTCTCGGTCTCGGTAGTGACG 3052683 29 100.0 32 GGTAGTGACG ............................. ATTTTATTTGACAAATTGGCGGCATCTCACTG 3052744 29 100.0 32 CATCTCACTG ............................. CACCACACATAATGATTACTCCACTACCCAGC 3052805 29 100.0 32 ACTACCCAGC ............................. ACTGCTTATCATTGATTTTATTGATTTTTCCC 3052866 29 100.0 GATTTTTCCC ............................. ACTAAAACTA ========== ====== ====== ====== ========== ============================= 27 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [40.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [77,83] Score: 0/0.18 # # Final direction: R [0,1.92 Confidence: HIGH] >NC_011083 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3069198 29 100.0 32 CCGATGAACG ............................. TCTTTATCAGCTAACCATTTCCAGAACTCGTC 3069259 29 96.6 32 AGAACTCGTC ...........T................. TATAATATGAATTAATTTTTGCGCATAACCTG 3069320 29 100.0 32 GCATAACCTG ............................. TGCCCGTTCTGCCTCTTCGCACTCTCGATCAA 3069381 29 100.0 32 TCTCGATCAA ............................. GTCGCGTTCGTTGCCGGTATAGACCAGCGTCA 3069442 29 100.0 32 ACCAGCGTCA ............................. ATCGAATCGAAACCCCAGCCACAGAAATAATT 3069503 29 100.0 32 AGAAATAATT ............................. GCTCATGTCAAACGCCATCAGCGTTCCGGCAT 3069564 29 96.6 32 GTTCCGGCAT ...............A............. AATCGCCAGCCTCGGAAATATTCCATCCTCCG 3069625 29 100.0 32 CCATCCTCCG ............................. AGGAACTAAACAGCCTGACCGTTGAGGATCTG 3069686 29 100.0 32 TGAGGATCTG ............................. ACCGGACAAATCTTTTTTTTCCTGTTCCTGTT 3069747 29 100.0 32 TGTTCCTGTT ............................. GGGCGGTCCCCGGCCTCAATACCGCGCTGACG 3069808 29 100.0 32 CGCGCTGACG ............................. TTGAGGTGCCGCTTGCCGTTCTTCTGTTTTTT 3069869 29 100.0 32 TCTGTTTTTT ............................. GGGCACTATGAACGGATCGGCGCTGATGCCGG 3069930 29 100.0 32 CTGATGCCGG ............................. GGTAAAGCCACACCATTTTTTATTGACCTCGC 3069991 29 100.0 TTGACCTCGC ............................. CTAGGAGGCG ========== ====== ====== ====== ========== ============================= 14 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [160,365] Score: 0.18/0.18 # # Final direction: R [0,1.83 Confidence: HIGH] >NC_011059 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2174970 37 100.0 33 TTATGAAGAA ..................................... GCGAACGGAGTAATGACCGAGAAGATGCTCGGC 2175040 37 100.0 41 GATGCTCGGC ..................................... AAGGCTTATATGGGCGCCTACGAACTGGTTAATTATGACTC 2175118 37 100.0 41 ATTATGACTC ..................................... GATGTGGTCTTGATGTTGTTTACACTCGACCAGTCATCAAA 2175196 37 100.0 37 AGTCATCAAA ..................................... AGAAAAATCTAAATGAAATAGATGTGTTTAGTTGGAG 2175270 37 100.0 39 TTAGTTGGAG ..................................... CTGATGTTTGGCAACCTAAACAGCCTCGGCAACCTGTCG 2175346 37 100.0 35 CAACCTGTCG ..................................... AAACGACGCGATCTTGTTGCGTCAAGAAATGGTCC 2175418 37 100.0 38 GAAATGGTCC ..................................... GCATCTTTACAAAGAAAGGCATCTACGTCTACATCTAA 2175493 37 100.0 CTACATCTAA ..................................... CCACCCTCT ========== ====== ====== ====== ========== ===================================== 8 37 37 GTCTCAATCCCCCTTACTCAATCGGGTCTTCCTACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [7,11] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [60.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [442,314] Score: 0/0.18 # # Final direction: R [0.27,0.74 Confidence: MEDIUM] >NC_011059 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1536026 28 89.3 33 TAAGGGGTAG --...C...................... TCCTTCCGGCGTGACGAAGGTGCAGGATGGGTG 1536087 28 89.3 33 AGGATGGGTG AG...C...................... TGTGGATCTTGCTGATCTTGGTGCTTCGGGGTA 1536148 28 100.0 33 CTTCGGGGTA ............................ TCGACAAGCGCTACTATGAAGATGGGGGGCTTG 1536209 28 100.0 33 GGGGGGCTTG ............................ AATCGCACTGATGATGTGAATGGGTCTTTTGAG 1536270 28 100.0 33 GTCTTTTGAG ............................ AGAAAACCCGGCCACCTCAACGCGAATCAAGGA 1536331 28 100.0 33 GAATCAAGGA ............................ GACGCGGCTTGCCTTGAGGTCTGGGCGAAGGCA 1536392 28 100.0 33 GGCGAAGGCA ............................ GGAAATAGAGACCGGCAGCAGGAACGCGCACTG 1536453 28 100.0 33 ACGCGCACTG ............................ AGGGCAAGAATGAAAATGGATCGTGGCCGCTGG 1536514 28 100.0 33 TGGCCGCTGG ............................ GTGAGCTACGCCCACTTCGGCACGCTCACGCAG 1536575 28 100.0 33 GCTCACGCAG ............................ TTGGCCCACTGCTCGAAATGCGCAACGATGCCG 1536636 28 100.0 33 AACGATGCCG ............................ CTTGCAGTCAACAACTCTTACAACTCTCATTGA 1536697 28 96.4 33 CTCTCATTGA ...............A............ TCCCCTCCAGCGCATCAAGCCACCCCGCTACCG 1536758 28 100.0 33 CCCGCTACCG ............................ GGAGTAGACTGGTCACGTGTGACCTCAACAGTA 1536819 28 100.0 33 CTCAACAGTA ............................ CTGCTACCAAGTTTTATGGTGAAGTAATATTTA 1536880 28 100.0 33 GTAATATTTA ............................ ATGGGCTGAATACTTTGCACGTGCGGTCGGGCA 1536941 28 100.0 33 CGGTCGGGCA ............................ GATGCTTCGGCGCTTGAGGAGACGACAGGAAAG 1537002 28 100.0 33 GACAGGAAAG ............................ TCCAGAAACCTCTCATACATCTCTGCCCTCTTG 1537063 28 100.0 33 TGCCCTCTTG ............................ TCTGTCTTACTCTGATGAGCTCGTCGAGGAGAA 1537124 28 100.0 33 TCGAGGAGAA ............................ CCGCAGCAGATCTGAGATGCGAGCTGTCGAGTG 1537185 28 100.0 33 CTGTCGAGTG ............................ GGCGGATGATGTCATCTATAGGGGCCTGTGTCG 1537246 28 100.0 33 GCCTGTGTCG ............................ GATACAATCAAAACAGTCATGCTCCTCAAACTG 1537307 28 100.0 33 CCTCAAACTG ............................ CGAAGCGTTCGCTCTAAGCCTGAACGAATACTT 1537368 28 100.0 33 ACGAATACTT ............................ CGTAAATCCTTAACCTCTCGTTGATGAGCGGTG 1537429 28 100.0 33 ATGAGCGGTG ............................ GATCTATTACTTTGGCTGAACCGCGCCGGTCTG 1537490 28 100.0 33 CGCCGGTCTG ............................ AATTCCTTTATCTCTGGCGCAGACACGATGCCG 1537551 28 100.0 33 CACGATGCCG ............................ CGAATATCTGGCAAAGCGAGAGATGATTCTGCG 1537612 28 100.0 33 TGATTCTGCG ............................ TCTGCTTATCGCCTGCTGCGTCTTACTTTTGAG 1537673 28 100.0 33 TACTTTTGAG ............................ ATCTGGTACAGGGCTAACTCAGGAGGGCATGAG 1537734 28 100.0 33 AGGGCATGAG ............................ TTCCGGCAGTAGTCAAGCACAACCCGTACTGTA 1537795 28 100.0 33 CCGTACTGTA ............................ TTTTTATATGGAGCGAGACTCTGCTGCAGAAGG 1537856 28 100.0 33 CTGCAGAAGG ............................ GCATTCTTTCCTGACCCCATCCAGCACAGCGTA 1537917 28 100.0 33 GCACAGCGTA ............................ ACGCTAAAGGTAACGCTTTTATCGGAGGGTCAG 1537978 28 100.0 33 GGAGGGTCAG ............................ GGTGTCGGCGCATGGGAGCGTGAACTTGAAGCA 1538039 28 100.0 33 ACTTGAAGCA ............................ GCGTCCTGAGATCTTCAGCGTACAGCGCCTCAG 1538100 28 100.0 33 AGCGCCTCAG ............................ AACCTTCTCCCCATCAGCGGTGTAAGCAATCGA 1538161 28 100.0 33 AAGCAATCGA ............................ TTGGTAGTAGTGACCAGGCTAACCAGATGTATG 1538222 28 100.0 33 CAGATGTATG ............................ TTCCATCATTCACTCCTGTCAAATTTTAAAAAG 1538283 28 100.0 TTTTAAAAAG ............................ ACTGGAATTT ========== ====== ====== ====== ========== ============================ 38 28 33 GAAACACCCCCACGCCTGTGGGGAAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-10.90,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [228,31] Score: 0.18/0.18 # # Final direction: F [0.55,0.41 Confidence: LOW] >NC_011059 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 2177367 35 100.0 38 CAGTTGCAAA ................................... GAAACACTCAGTACAGCTATGTGATTTCGGGATTCTAT 2177440 35 100.0 39 GGGATTCTAT ................................... AAGTGGTTGAGGTTCCTGCAGCACATGTTGGTAAGAAAT 2177514 35 100.0 37 GGTAAGAAAT ................................... CAGACATCCCCCATGTCTTTTGTATGAACTGTAATTC 2177586 35 100.0 35 ACTGTAATTC ................................... AATGACGACAGAAAAGCTGACGAAAAAGAATGCAG 2177656 35 100.0 AAGAATGCAG ................................... AGTACCTCTG ========== ====== ====== ====== ========== =================================== 5 35 37 GTCGCAATCCCCTGTAGCTAATCGGGTCTTCAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [8,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.70,-4.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [51.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [307,432] Score: 0/0.18 # # Final direction: R [0.27,0.74 Confidence: MEDIUM] >NC_011094 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2981951 28 92.9 33 GGTGAAACGT -..............A............ TTTTTAGAGGTGTACACACTGTCGGCCTTTTGC 2982012 28 100.0 33 GGCCTTTTGC ............................ CACCTTAGCGACGAAATTAAAACCGAGCTCACC 2982073 28 100.0 33 CGAGCTCACC ............................ GCTTTGCCCCATGCGTCCAGATCTTCAACGGGC 2982134 28 100.0 33 TTCAACGGGC ............................ AGAAAATTATCACTGACGAGTGACAATAACTCC 2982195 28 100.0 33 CAATAACTCC ............................ GGAGGTGATCCGGGATTTAAACAAAATGATTAA 2982256 28 100.0 33 AAATGATTAA ............................ GGTTTACAGACCTCAATAAAAAGACGGCAGGCC 2982317 28 100.0 33 ACGGCAGGCC ............................ GTCAGCGCCGGCGATTGGGCCGCCGATTTTGTC 2982378 28 100.0 33 CGATTTTGTC ............................ AATGCAATTTCCTGACTCCCCTAACCTCAAGGC 2982439 28 100.0 33 ACCTCAAGGC ............................ AAGTACCGGCAAGTGTGGTAGCGAAGGTTATGC 2982500 28 100.0 33 AAGGTTATGC ............................ GCGCTTGATCTCCCGTTATCTAAGGGCCAATCC 2982561 28 100.0 33 GGGCCAATCC ............................ GCATCGGTGGCGCTGGCCAGTTCAAAAATACGC 2982622 28 100.0 33 AAAAATACGC ............................ CTCAAACGAACGCAGTATTTGATCGGATGTTTC 2982683 28 100.0 CGGATGTTTC ............................ TCTAAATCT ========== ====== ====== ====== ========== ============================ 13 28 33 GGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [18,85] Score: 0.18/0.18 # # Final direction: R [0,2.1 Confidence: HIGH] >NC_011094 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================== ====== 2999469 26 100.0 35 NNNNNNNNNN AC.GC...........A......... CACTCGTAGTCTTCCGGGTAGGCGTTTTCATCCGG 2999530 26 100.0 35 NNNNNNNNNN ...............A.......... CACTCTTTATCAGCTAACCATTTCCAGAACTCGTC 2999591 26 100.0 35 NNNNNNNNNN ................A......... CACGCGAGCGTTTTGGGTGGCACAAAATCCCCGAG 2999652 26 100.0 35 NNNNNNNNNN ................A......... CACGTAACTTAATAAGGTCCTGGACATTAATTTTG 2999713 26 100.0 35 NNNNNNNNNN ................A......... CACAGTGCCGATGCGCGGTATCTGGGGAATTTCGC 2999774 26 100.0 35 NNNNNNNNNN .......................... CACATAAAGGTCGGGGACGATATTGTTACCTGGTG 2999835 26 100.0 35 NNNNNNNNNN .......................... CACGGTGGAATCGCGCAAAACTTTGTTTGTTTCCG 2999896 26 100.0 35 NNNNNNNNNN .......................... CACGGGTACTGACAATAGTACAAATAAAAAAAACG 2999957 26 100.0 35 NNNNNNNNNN .......................... CACTCGACCAAACCAAAGTGTGAGAATCCTGTATA 3000018 26 100.0 35 NNNNNNNNNN .......................... CACGGTTTTGGCTATCTGAGCGGCGTCCGCCGCCG 3000079 26 100.0 35 NNNNNNNNNN .......................... TACTGACGCTGGACGAGGCGAGTTCTTTCCCCGGA 3000140 26 100.0 35 NNNNNNNNNN .......................... TACATCATAACGGTTTTTTACATATAAGAAGTTGC 3000201 26 100.0 35 NNNNNNNNNN .......................... TACTCCACGATGCCGGCAAGCTCCCGGTCGAGCCG 3000262 26 100.0 35 NNNNNNNNNN .......................... TACTGCCAGGCGTGGGGTTATGACAATGCTGAGGC 3000323 26 100.0 35 NNNNNNNNNN .......................... TACAACAATCAGGTTAGTTCGAATAGCCAGCAACG 3000384 26 100.0 35 NNNNNNNNNN .......................... TACGGGTTCGTTAGCGGGATCTGGTTGCTGCGCCA 3000445 26 100.0 35 NNNNNNNNNN .......................... TACTTCTTATAAAATCAATAGGTTAGCTACATAGC 3000506 26 100.0 1 NNNNNNNNNN .......................... NNNNNNNNNN ========== ====== ====== ====== ========== ========================== 18 26 35 CGGTTTATCCCCGCTGGCGCGGGGAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 89% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-2.40,-3.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [99,124] Score: 0/0.18 # # Final direction: R [0,1.65 Confidence: HIGH] >NC_011060 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 2544259 35 100.0 39 CAGAGGTAGA ................................... TATTCATTGATTGCCAGAGTGTAACATTCTTTGTTTCCT 2544333 35 100.0 36 TTTGTTTCCT ................................... TTTTCAGCTCGTCATCACTGATCTCAAACCACTGAT 2544404 35 100.0 36 AACCACTGAT ................................... AAAGGAATGCAACAGATAAGCTACCAATAACGGCCC 2544475 35 100.0 38 ATAACGGCCC ................................... TAATGCAATAAGTGCTGGAGCCGGAAAAGATAGTTAGC 2544548 35 100.0 36 GATAGTTAGC ................................... ATCCTTTAGCACCTCTAAAGGGCTATTCCACGCTGA 2544619 35 100.0 39 TCCACGCTGA ................................... ATACCAGAAAAGCAGCGCCACCGGCACGTGTGATGTCTT 2544693 35 100.0 38 GTGATGTCTT ................................... CTTACTCAGACTTTCATCTGCTGAATAAGCAGAATAAT 2544766 35 100.0 37 GCAGAATAAT ................................... CTCTATTATATGCATAGGTGCTTGTCCCTCTGATAAA 2544838 35 100.0 38 CTCTGATAAA ................................... TTTCTTGTTTTTGCCCGCCACCATTACTGTGATAGCTA 2544911 35 100.0 36 GTGATAGCTA ................................... AGCAGGTTCATATACATCCCGATCACTGTTTTCAGA 2544982 35 100.0 37 TGTTTTCAGA ................................... TAAAATAACAAAACAAACGCTCCGGCAATTGCCAGCA 2545054 35 100.0 35 ATTGCCAGCA ................................... TTGGTTCTCGACCAGATCATAGACGATCTTGAGCA 2545124 35 100.0 36 ATCTTGAGCA ................................... AAGAGCTTTGACCTCATTCATCAGATCAAACAGCAA 2545195 35 100.0 37 CAAACAGCAA ................................... CATGGTGACGGGGTTATAGAGTTGAGCGCGGTATAAA 2545267 35 100.0 37 GCGGTATAAA ................................... CTGCGCATCGACAAGCGCATCCGGAAAGGCCTGCCAG 2545339 35 100.0 34 GGCCTGCCAG ................................... GAATTTCTCGATCATTAAATGGCCAGTCATAATA 2545408 35 100.0 35 AGTCATAATA ................................... TGGATAATTTTTGTTCCATTTGAGTAAATTGTTTT 2545478 35 100.0 39 AAATTGTTTT ................................... GCCAAAAACATTGCATCTTTCTGCTCTTCGGTAACGATA 2545552 35 100.0 36 GGTAACGATA ................................... GAGCTCATTGATAACTGTCGCGAGGGCTTGCTCGAG 2545623 35 100.0 37 CTTGCTCGAG ................................... TCAGATTAAAGTTGTTTATGCAACGTTTTTTGCAATT 2545695 35 100.0 35 TTTTGCAATT ................................... GTTTTGAAAAGCAGCCGTGTCTATGATGGTTGTCT 2545765 35 100.0 35 ATGGTTGTCT ................................... TCAGTGAAAATCATCAGTACTGCATTCTTGTGTTT 2545835 35 100.0 35 TCTTGTGTTT ................................... CCACATCCGTTGATTGATGCAATTATCCATTGTGA 2545905 35 100.0 38 TCCATTGTGA ................................... TTTAAGGACATCCCCGCCAAGCCTATTTTGATAGAAAT 2545978 35 100.0 36 TGATAGAAAT ................................... CCGTTTAAGTTTTTGCCCTTCCCTTTTTTGCTTCTG 2546049 35 100.0 36 TTTGCTTCTG ................................... TAAGCAACAAATCGGCCTCCATTACTTCCTGCTGCT 2546120 35 100.0 38 TCCTGCTGCT ................................... TGTTCCCGCGGAAGCGATTACCACCGACGTGCTTCCAG 2546193 35 100.0 GTGCTTCCAG ................................... CAACATACTT ========== ====== ====== ====== ========== =================================== 28 35 36 CATCATATCTTATTGCACGCATAGCGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.80,-1.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [252,210] Score: 0/0.18 # # Final direction: F [4.87,0.27 Confidence: HIGH] >NC_011059 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2189253 37 100.0 35 AAAAATGACG ..................................... AGAGCTTGGTTGCTTTCTGAGCGTCTCAAGAAGGG 2189325 37 100.0 34 TCAAGAAGGG ..................................... CCGCATTGGCGAACGGGGCTCTGGAGGCGGCGGC 2189396 37 100.0 33 AGGCGGCGGC ..................................... ACTATACCCAACAGGCATACTTCCTCCTTAAGT 2189466 37 100.0 33 CTCCTTAAGT ..................................... TATGCGGTTATCAGTGGAGGTGTTCCGATACCG 2189536 37 100.0 34 TCCGATACCG ..................................... TCGTTACAGATAGTTTCCCAAGCGCGTATACAAG 2189607 37 100.0 CGTATACAAG ..................................... CGTCCCCTTT ========== ====== ====== ====== ========== ===================================== 6 37 33 GTCTCAATCCCCTTTATCCAAGCGGGTCTTCATCTAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:51.35%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [60.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [982,818] Score: 0/0.18 # # Final direction: R [0.27,0.37 Confidence: LOW] >NC_011060 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1762054 32 100.0 35 NNNNNNNNNN ................................ TTCTGCAGCAGTTGATGGTTGGATGGGTATGTCAA 1762121 32 100.0 34 NNNNNNNNNN ................................ AAAATCGGCTTCGGCGCCTGCAAGGCTCTCATAG 1762187 32 100.0 35 NNNNNNNNNN ................................ GTCAAAATATCATCAGTCGGTAGGCATACGAGAAT 1762254 32 100.0 35 NNNNNNNNNN ................................ TGGTTTCCGGCAATGCACGACGGACGGGGCAGATC 1762321 32 100.0 36 NNNNNNNNNN ................................ ATGAAGAGGTATTATCAGGAATGCATGGTTCAGTAC 1762389 32 100.0 34 NNNNNNNNNN ................................ TGCTCTTTGTGTACGTATTGTTGCAGTTGCTACA 1762455 32 100.0 34 NNNNNNNNNN ................................ TCAATCTGCTACGCAACTCCTTTTTCAGAGTGTC 1762521 32 100.0 36 NNNNNNNNNN ................................ AACCTTATCAATACGACAAGCTTATTAGCAAAATGT 1762589 32 100.0 35 NNNNNNNNNN ................................ CTATCATTGTGCCGCTTTGAGCAACGATAGTGCCT 1762656 32 100.0 33 NNNNNNNNNN ................................ CAATCATACTATCTCCTGTTGTTTGTGCGGGGT 1762721 32 100.0 35 NNNNNNNNNN ................................ CGAGATTGCGCAGGCGGCAAATGGTGATCTTGGAA 1762788 32 100.0 33 NNNNNNNNNN ................................ CATTGTAGTGGTGTTTTATGGTTTTAACAACTC 1762853 32 100.0 34 NNNNNNNNNN ................................ AGTTGTCGCTAATTCAGGGGCGCAGAATATCCCG 1762919 32 100.0 34 NNNNNNNNNN ................................ CAGTCGAATAAGTCGCGAGATATGTCAATCCACT 1762985 32 100.0 34 NNNNNNNNNN ................................ TGTTACTTGCGCAGATGCTTGCGTAAAAGGTGAT 1763051 32 100.0 35 NNNNNNNNNN ................................ AGATACCGCTTGGCCCTGCGGTTCAGTCCATCAAC 1763118 32 100.0 34 NNNNNNNNNN ................................ TTTTGTTCCCTGATAGGTTACCTGATTCGGTGAT 1763184 32 100.0 34 NNNNNNNNNN ................................ TATCGATACGGAAAAGCAAGAACGTGCGGATTTT 1763250 32 100.0 33 NNNNNNNNNN ................................ CGCGTTTTATTGGGAAGTGTATCGGTTATGGCT 1763315 32 100.0 35 NNNNNNNNNN ................................ CAACAATTGCCGCAAAATCAACAATAGTTATCTGT 1763382 32 100.0 33 NNNNNNNNNN ................................ TTCTCAGCAATGCTCTTTTTGACAAGATCACGC 1763447 32 100.0 34 NNNNNNNNNN ................................ TTTTCTCGGCAGCTTGAGCTGATTGAGGCAGGAG 1763513 32 100.0 35 NNNNNNNNNN ................................ TGTTACTTGCGCAGATGCTTGCGTAAAAGGTGATA 1763580 32 100.0 34 NNNNNNNNNN ................................ CAAGTGTCGCAAAATCTCCGCTCATTTTATCCCT 1763646 32 100.0 34 NNNNNNNNNN ................................ GATTATTCGTTTGGAAAAGTATTGAAACGGATGT 1763712 32 100.0 34 NNNNNNNNNN ................................ TACAGAAGGGGGGACAAGAAAAGACCTGTCCCCT 1763778 32 100.0 35 NNNNNNNNNN ................................ GCGCGTAACTGTAAACTCTTTTCCGCACTCCTCAC 1763845 32 100.0 35 NNNNNNNNNN ................................ AGGGGTACAGCATATTTATGCCCTGGAGGCGTCAT 1763912 32 100.0 34 NNNNNNNNNN ................................ TTTTGTAATCACCTCGGCTATAGATTGGAGTCCA 1763978 32 100.0 35 NNNNNNNNNN ................................ ACATTAAAGGCGTAAAGCATGTAGATATTTTTAAA 1764045 32 100.0 32 NNNNNNNNNN ................................ TCGGCAAACTGATAACAAAATACGACATCCAA 1764109 32 100.0 35 NNNNNNNNNN ................................ GACTCGATACATGAAATATGGGATATCATGAAAAA 1764176 32 100.0 36 NNNNNNNNNN ................................ AATTATTTGGCCGTCATCCCTTTTTTGGGAATCAAT 1764244 32 100.0 33 NNNNNNNNNN ................................ CATTATAGTTCCCCTTGTTTTTTGCTTATGTAA 1764309 32 100.0 36 NNNNNNNNNN ................................ TGTCAATCGCTTTTGTATCTCATCTTCCTTTAGGTC 1764377 32 100.0 34 NNNNNNNNNN ................................ TGCCTTCTGTGCGGGAAAATGGCAACAATGGTGT 1764443 32 100.0 35 NNNNNNNNNN ................................ CGGTACATACTTTTTGAGTGTATCGACCTGCAATG 1764510 32 100.0 34 NNNNNNNNNN ................................ AAATAACATTATCTGTTCTGTATACAGACCTTTA 1764576 32 100.0 34 NNNNNNNNNN ................................ TGCATCAATCACACCGGCATAATAAAGAGGTCTA 1764642 32 100.0 35 NNNNNNNNNN ................................ ACCGCTCTCATATCTCTATGAACTAAGCAAAGGAA 1764709 32 100.0 33 NNNNNNNNNN ................................ ATATTTGGCTTTGCCGGTGTATGGTTTTGCATA 1764774 32 100.0 33 NNNNNNNNNN ................................ ATCTTTTGCCGACGAGGAGCAGACGTCCCCTGC 1764839 32 100.0 34 NNNNNNNNNN ................................ TTCCACATGTGCGACGACGGAAAAGCCTCTCTAT 1764905 32 100.0 33 NNNNNNNNNN ................................ ACCTGCGGGCATTCTCATGCAACAAAAGGATTT 1764970 32 100.0 36 NNNNNNNNNN ................................ GCGTTCAGCCCTACCATCTTTGCGCTGGAATGCAAT 1765038 32 100.0 34 NNNNNNNNNN ................................ CGCGCGTCATCCCAACTCTCCTGCATGTCATCAA 1765104 32 100.0 35 NNNNNNNNNN ................................ GCAATGGTTACCAAGCTCCATATAGTCGTTTGGTG 1765171 32 100.0 34 NNNNNNNNNN ................................ GTGTGTGGTCATAATGCCGTTTTCCATCAACCAC 1765237 32 100.0 35 NNNNNNNNNN ................................ AGCACTTCCGCTGCCCGTTCAATTGTCATCTCACT 1765304 32 100.0 34 NNNNNNNNNN ................................ TTGCTGATGGTGAGGGCGCACCAGAAGTTTACAG 1765370 32 100.0 36 NNNNNNNNNN ................................ CATAATCACTCCTGTTTGATTTTTGCCATTCTGATA 1765438 32 100.0 35 NNNNNNNNNN ................................ AAAATACGGGGCCTTGGTTATGATCCTTGGGGTTC 1765505 32 100.0 33 NNNNNNNNNN ................................ TTGCCGAGTATGATGCAAAACGGGGAGGTACAG 1765570 32 100.0 33 NNNNNNNNNN .....A.......................... TGCTTGGATTGTCGTAACTGACCCATCAGGAAA 1765635 32 100.0 34 NNNNNNNNNN ................................ ACAAAAGACAAGGGCACTCTTGTATCATTCCTAC 1765701 32 100.0 35 NNNNNNNNNN ................................ CAAAAGATATGTTTCGGCAACTCGCAATAATGCAG 1765768 32 100.0 33 NNNNNNNNNN ................................ CTCATAGCCGCATACGTGAGGAGTGCTGTTATC 1765833 32 100.0 34 NNNNNNNNNN ................................ GAGTGCTGATTGGTGCTTTATAATCGGCGTCATG 1765899 32 100.0 33 NNNNNNNNNN ................................ AACTCTCTTTCAAGGGCGTCTATAGTTGCCATT 1765964 32 100.0 35 NNNNNNNNNN ................................ CCCGGTATCATACGGCTTATCACCTCACTGTAAAA 1766031 32 100.0 33 NNNNNNNNNN ................................ ACCCGTTCCCGTGCATCAGCCATTGGTCTCCTC 1766096 32 100.0 34 NNNNNNNNNN ................................ AACAAAATTCCAACGGATTCTCAATTTGCAGCGA 1766162 32 100.0 33 NNNNNNNNNN ................................ AGGATTTGCCCTATGGAATCATGGGAGTGGCAA 1766227 32 100.0 33 NNNNNNNNNN ................................ AGTCACAATCGACGACTCGCTTATTGCCCTAAA 1766292 32 100.0 33 NNNNNNNNNN ................................ CACCGCTGCATACGATGATGCTCTAAAAGCTAA 1766357 32 100.0 35 NNNNNNNNNN ................................ AAAGCAATATTGTCAGGCCCTGTGCTTAATGATGA 1766424 32 100.0 35 NNNNNNNNNN ................................ CATAACAGGGAATTATGCTGAGATGCAACGTCAAA 1766491 32 100.0 33 NNNNNNNNNN ................................ TGGCTACATACACCCTTGCAGCATCTTACAAGA 1766556 32 100.0 34 NNNNNNNNNN ................................ TCGTGAATGTTCATTGCTTAACACTTTGCATTTT 1766622 32 100.0 35 NNNNNNNNNN ................................ TGTCCTGACAAAATCCATAGCACCAATTACAACCC 1766689 32 100.0 34 NNNNNNNNNN ................................ TTGAAGAGATCATCACATCGACAGACCCGTCAAA 1766755 32 100.0 35 NNNNNNNNNN ................................ CTGCATATTTCACCTCGCTTTTTGATTTAATTTTT 1766822 32 100.0 35 NNNNNNNNNN ................................ CATTGCAGGGCGTTTTGTATCTGTTCCAGAGAGAA 1766889 32 100.0 35 NNNNNNNNNN ................................ AATCTTCCCCATCAAAAGATTGTGCGTGATGCCGT 1766956 32 100.0 35 NNNNNNNNNN ................................ TGCAGAGATATTTCGCTCTATGCATAATGCACTGA 1767023 32 100.0 35 NNNNNNNNNN ................................ AAAACTATCGTCCTTGTGATGATGGTCCTCTTTGG 1767090 32 100.0 36 NNNNNNNNNN ................................ CAGTTTTTGCGGTTTGCTGTAGACCAGATATTCTCA 1767158 32 100.0 37 NNNNNNNNNN ................................ CGCTTCATGACGCCGATTATAAAGCACCAATCAGCAC 1767227 32 100.0 35 NNNNNNNNNN ................................ GATTGCTGGATTAAAGCGAATCCGAATATCGGAGT 1767294 32 100.0 33 NNNNNNNNNN ................................ CTGAGAGGGGAAATACCATCAATATTCCCGCAA 1767359 32 100.0 35 NNNNNNNNNN ................................ AGTCGAAGATTGGGAGTCTTTTGCTGTACTCGTGA 1767426 32 100.0 34 NNNNNNNNNN ................................ AACAAACAGCGCCTCGATGAAATCACCGGCGATA 1767492 32 100.0 35 NNNNNNNNNN ................................ ATCCACATAGACAGCAAGATGCTCAGCGGATTCAC 1767559 32 100.0 37 NNNNNNNNNN ................................ CGAGATATTGCGCGTCGTTTGGGGATATGCTCAACTG 1767628 32 100.0 33 NNNNNNNNNN ................................ AGGAGTCGCTGATCAAGAATCGAATACTCTCTT 1767693 32 100.0 34 NNNNNNNNNN ................................ TGTTGATTGGGCAAGGGATTATTTTTCGACCGCC 1767759 32 100.0 31 NNNNNNNNNN ................................ CCCTATCAACGACACACTTCCTCCTATCCAT 1767822 32 100.0 32 NNNNNNNNNN ................................ TGCCGGGAGGTGGCCGCATGAACGAGTCGCAG 1767886 32 100.0 34 NNNNNNNNNN ................................ CAATCCTCTTTTGATGCAGCATTGATTCGCCGAA 1767952 32 100.0 33 NNNNNNNNNN ................................ AGTCTGACCGCTTTGCGAACGGTATCTACATTA 1768017 32 100.0 35 NNNNNNNNNN ................................ ACGATCTCCGTCTTTGCCCTCTCACGGCTAAACCC 1768084 32 100.0 36 NNNNNNNNNN ................................ TATTTGAGTGTCCATTTGTTTGTATTGCATTGCTGT 1768152 32 100.0 33 NNNNNNNNNN ................................ ATGGCGATTTCTTCGGCTTGCTTGCCGTGCGCT 1768217 32 100.0 35 NNNNNNNNNN ................................ CCGTTGGCGGCAAATTAAGCATCGTAAACCCGTAA 1768284 32 100.0 36 NNNNNNNNNN ................................ CGGGAGTTGTGCGGCCTTGAGCGTAGAGCGCGTTCT 1768352 32 100.0 1 NNNNNNNNNN ...........C..A...............CT NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 96 32 34 GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.50,-7.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [179,228] Score: 0/0.18 # # Final direction: F [4.91,0.74 Confidence: HIGH] >NC_011147 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2885107 29 93.1 32 GGTGAAACGT --........................... GAATCATTCTGTCACGAACAATTATATTTTCT 2885168 29 100.0 32 TATATTTTCT ............................. GACATTTGACACTATGCGCGATGATGCAATCG 2885229 29 100.0 32 GATGCAATCG ............................. CGTTTACGTTTGCCGACGATTTAACTAAACAG 2885290 29 100.0 32 AACTAAACAG ............................. AGCGCCGCCCTCGCGTAGAAAGTGTTCGTGTG 2885351 29 100.0 32 TGTTCGTGTG ............................. CTCATTACGATGTGACGCAATACCGTGCTGTC 2885412 29 100.0 32 CCGTGCTGTC ............................. AGCATTTTCTTTGCTGGCCCCCATTTGGTGTA 2885473 29 100.0 32 ATTTGGTGTA ............................. ACGTAGCCGGTACAACTGACGCAGTAGACGTG 2885534 29 100.0 AGTAGACGTG ............................. TCTAAATCTA ========== ====== ====== ====== ========== ============================= 8 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1315,84] Score: 0.18/0.18 # # Final direction: R [0.18,1.92 Confidence: HIGH] >NC_011147 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2902172 29 100.0 32 GCGCGATCCC ............................. TGTTCGAGTTGCGCCGGTGATTTGAAATCTTC 2902233 29 100.0 32 TGAAATCTTC ............................. GATGGCCTGTTTTTCAACGAAAGAGAAGAATT 2902294 29 100.0 GAGAAGAATT ............................. ACTAAACGTA ========== ====== ====== ====== ========== ============================= 3 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [26.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1044,298] Score: 0.18/0.18 # # Final direction: R [0.18,1.51 Confidence: HIGH] >NC_011060 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 2546436 35 100.0 35 CCTACACGCA ................................... CAAAGGATTACTCCCCCAGCAAGAACCCAACGAAG 2546506 35 100.0 35 CCCAACGAAG ................................... CCAACAACCTCGAATGCTTGCGATACAACCGGCAT 2546576 35 100.0 36 CAACCGGCAT ................................... TGATGAATCCCATGCCTTCGATAAACAGGAGCCCTA 2546647 35 100.0 AGGAGCCCTA ................................... AACTCACCGA ========== ====== ====== ====== ========== =================================== 4 35 35 CATCATATCTTATTGCACGCATAGCGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.80,-1.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [209,681] Score: 0.18/0.18 # # Final direction: F [4.87,0.45 Confidence: HIGH] >NC_011071 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 3431611 19 100.0 44 NNNNNNNNNN ........G.......... CGGGGCAGCCTTCTTGGTGGCCTTCTTCGCGGTCTTCTTCACTG 3431674 19 100.0 53 NNNNNNNNNN .......GG.G.T...... TACCGCCTTCTTTGCAGTCTTCTTTACGGCCTTCTTGGCAGTCTTCTTTACTG 3431746 19 100.0 56 NNNNNNNNNN .......GG.GA....... GGCCGGCTTGCGGGCAGTGACCTTCTTGGCAGTCTTCTTGGTGGCCTTCTTGGCTA 3431821 19 100.0 56 NNNNNNNNNN .......G..G........ CGCGGTCTTCTTGACGGCCTTCTTGGCAGTGGACTTCTTGGCTACCTTCTTTGCCG 3431896 19 100.0 32 NNNNNNNNNN ................... CGCAGTGGTCTTCTTGGCGACCTTCTTCGCAG 3431947 19 100.0 20 NNNNNNNNNN ................... GGCGGTCGCCTTCTTCGCGA 3431986 19 100.0 20 NNNNNNNNNN ................... GGCAGCGGCCTTCTTAGCGA 3432025 19 100.0 1 NNNNNNNNNN ..........C..T..... NNNNNNNNNN ========== ====== ====== ====== ========== =================== 8 19 40 CCTTCTTCACTGCCTTCTT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.63%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [31.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [144,816] Score: 0.18/0.18 # # Final direction: R [0,0.86 Confidence: HIGH] >NC_011149 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2988105 29 100.0 32 NNNNNNNNNN GT..............A...........T TTTTCAGCCCTTGCCGACTGCGGAACGCCCCT 2988166 29 100.0 32 NNNNNNNNNN ............................. ATGGATGGCTCATATCCGGTTTCTGTTTCTGC 2988227 29 100.0 32 NNNNNNNNNN ............................. GCGAAATAGTGGGGAAAAACCCCTGGTTAACC 2988288 29 100.0 32 NNNNNNNNNN .......................A..... TAGGCCTTGATACCATCGCTCGCACCTCGTCA 2988349 29 100.0 32 NNNNNNNNNN ............................. ATATTGATACTGTTCTCAAGCGCCGTTTTAGC 2988410 29 100.0 32 NNNNNNNNNN ............................. TGGCGCCAGAAATATTCATGATCATCGGGATT 2988471 29 100.0 32 NNNNNNNNNN ............................. TTCATATTCCAGAAAATGCCTGGGTGATGATC 2988532 29 100.0 32 NNNNNNNNNN ............................. GTGGTATCTCCTGTCGACCTTGCCGTTAAAAT 2988593 29 100.0 32 NNNNNNNNNN ............................. TATAACTGGCGGGTTTTAGTGTCGTTATAAAA 2988654 29 100.0 32 NNNNNNNNNN ............................. TCAGGCTTGACGACAGTCTCCAGCCACTCCTG 2988715 29 100.0 32 NNNNNNNNNN ............................. GACCGCGCGGGCTATCGTTCAGGACTATTTTT 2988776 29 100.0 32 NNNNNNNNNN ............................. TGGAAGATATTGAAAGCGCCCAATCTTCCCAG 2988837 29 100.0 32 NNNNNNNNNN ............................. CTCTGTTACACCGTTATGCACAGACCACACAG 2988898 29 100.0 32 NNNNNNNNNN ............................. GTTAATGCAAGCGCCATTAACAAGAAAATGAC 2988959 29 100.0 32 NNNNNNNNNN ............................. AGCTCCGGCAGGGTCATGTCCCGGCAGGTGCG 2989020 29 100.0 32 NNNNNNNNNN ............................. GTTGTGACGAGTTCGTCGTCTTTTTTTTCGCT 2989081 29 100.0 32 NNNNNNNNNN ............................. TAGGGAACCTGGCTAAAGTGTCTGAAGGCTAC 2989142 29 100.0 32 NNNNNNNNNN ............................. AATTTTTCTGCGGCCAGCGCGGCCAGCGCCTC 2989203 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 19 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [16,98] Score: 0.18/0.18 # # Final direction: R [0,2.1 Confidence: HIGH] >NC_011149 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3005578 29 96.6 32 TTTAGCCGCT ................A............ TTGCCGACCAGATCAATGACAACGCTAACCTT 3005639 29 100.0 32 CGCTAACCTT ............................. CAGATCACAACGGGTGACGTGATTTTTGGAAA 3005700 29 100.0 32 TTTTTGGAAA ............................. TCGTTTTTATCTGCATCTCACTCCCCCTTAAC 3005761 29 100.0 32 CCCCCTTAAC ............................. GCCTAAGCCGGGATTTGCTTTAGGCCAGTTGG 3005822 29 100.0 32 GGCCAGTTGG ............................. AATAAATGGGATGATCCTGTTGTCCGGGATGC 3005883 29 100.0 32 TCCGGGATGC ............................. TCCATCGCTTTTGCCAATCTATCAGACAATTT 3005944 29 100.0 32 CAGACAATTT ............................. GGCGACTAACGGCGTGCTGACCAGCCAGTCGC 3006005 29 100.0 AGCCAGTCGC ............................. ACTAAACGTA ========== ====== ====== ====== ========== ============================= 8 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [38.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [160,121] Score: 0/0.18 # # Final direction: R [0,1.92 Confidence: HIGH] >NC_011126 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1037710 30 100.0 36 NNNNNNNNNN .............................. TTTACTTAGGGATAGTGATGATACAGTATATAGTAA 1037776 30 100.0 36 NNNNNNNNNN .............................. TTTACTTAGGGATAGTGATGATACAGTATATAGTAA 1037842 30 100.0 36 NNNNNNNNNN .............................. TTTACTTAGGGATAGTGATGATACAGTATATAGTAA 1037908 30 100.0 36 NNNNNNNNNN .............................. GTAAAGCTTATATACGCTACTTGTCCTGGCTGCAGT 1037974 30 100.0 37 NNNNNNNNNN .............................. TTTATCGCTTGATTTTCAAAGCAAACGGCAGATATGT 1038041 30 100.0 34 NNNNNNNNNN .............................. GCTTCTACATCATTGCCAGACACAATTAAATCTG 1038105 30 100.0 36 NNNNNNNNNN .............................. AGATCAAAGCACGATCTCTGTCTGGGAGAACGAGGA 1038171 30 100.0 36 NNNNNNNNNN .............................. TCAAATACTGGATAGACATGGAAATCCAGATACAAA 1038237 30 100.0 36 NNNNNNNNNN .............................. TCAGCCAGTATTCGTTGTTTTTCAACCATACTGTGA 1038303 30 100.0 36 NNNNNNNNNN .............................. AAACATTAAACACACTATAAAACTGTCTACCTACTC 1038369 30 100.0 37 NNNNNNNNNN .............................. TAAACCAACCGTTGAATTTTAACGTCGTAATACCAGC 1038436 30 100.0 36 NNNNNNNNNN .............................. TAATATCAACGCCACGCTCTCGTGGTGATATATTTG 1038502 30 100.0 37 NNNNNNNNNN .............................. TTACGAGCGAAAGCTCTTGCAATTTATCAGACAAAAT 1038569 30 100.0 38 NNNNNNNNNN .............................. TAAAAATCACAAAACCAATTTGGACTGCTAACAACTGG 1038637 30 100.0 35 NNNNNNNNNN .............................. TCGTTCTGTACGAAGATGTATTTAATTGTCCACCA 1038702 30 100.0 37 NNNNNNNNNN .............................. AGACAATACAAAGACAAAGTACCAGCCATAGAGGTGC 1038769 30 100.0 37 NNNNNNNNNN .............................. AACAAATTTGGTATGGACACGTCATGCCATATGTGGC 1038836 30 100.0 37 NNNNNNNNNN .............................. GGAATTATCTCCCGAATCTCAAAGGCAAATCAGACAG 1038903 30 100.0 36 NNNNNNNNNN .............................. ACTTTAGGGTCATATTTTCAAAGCCTGTAGTTTTTA 1038969 30 100.0 36 NNNNNNNNNN .............................. TCTGTCCAGCGACGTATCCATTCCCTATGGAGCCTG 1039035 30 100.0 38 NNNNNNNNNN .............................. ACATTCACCACCTGGAATGGTTGGATCACCAAAACAGA 1039103 30 100.0 36 NNNNNNNNNN .............................. AATATTCGTCCAAATATGAACTATAACATACATAAT 1039169 30 100.0 37 NNNNNNNNNN .............................. TTGATTTGTTTGCAGGAATAGGCGGTATAAGAATAGC 1039236 30 100.0 38 NNNNNNNNNN .............................. GATATAGGGACTACTCAATCAGGCTCAATAGTAGCAAA 1039304 30 100.0 36 NNNNNNNNNN .............................. GAAGTATTACACGAAGGTAAAGATGATGAAAAAGCC 1039370 30 100.0 37 NNNNNNNNNN .............................. GATAATGATTTAGAACATATTGTATTTTTCAATTCTT 1039437 30 100.0 37 NNNNNNNNNN .............................. TACAACGTTACTAGTGATAACAGTAACAATACATAGC 1039504 30 100.0 37 NNNNNNNNNN .............................. ACCAGAAGTTGTTTGCTGGCTCAACTAAGAGTTTGAG 1039571 30 100.0 35 NNNNNNNNNN .............................. AAGTTATTTCTGTTTATTTCAAACTTGAGACTATA 1039636 30 100.0 1 NNNNNNNNNN C........................T.CTT NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 30 30 36 GTTTTGTTTGTACCTATAGGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.90,-0.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [394,112] Score: 0.18/0.18 # # Final direction: F [5.46,0 Confidence: HIGH] >NC_011134 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1366029 36 100.0 30 NNNNNNNNNN A.A..AA..........A.................. TGTTCAAACCATTCATTACACGTCTCATCT 1366095 36 100.0 30 NNNNNNNNNN .................A.................. ATCGGGCACACTTACTTGAATGTGAAACGA 1366161 36 100.0 30 NNNNNNNNNN .................................... CCGTAAACACGTCATAGGCTTGGTACTGAC 1366227 36 100.0 30 NNNNNNNNNN .................................... TTGAGGGATTGTATGAGCAAATCCAATGAT 1366293 36 100.0 30 NNNNNNNNNN .................................... TATAAATTGCAGCAGTTAGCATTTTTAAAT 1366359 36 100.0 30 NNNNNNNNNN .................................... TTACCATCATCTTTCCACTGTCTGATAGCT 1366425 36 100.0 30 NNNNNNNNNN .................................... TTGAGGGATTGTATGAGCAAATCCAATGAT 1366491 36 100.0 30 NNNNNNNNNN .................................... AATTTGCACTTTTAATTTGATAATATGTTA 1366557 36 100.0 30 NNNNNNNNNN .................................... CTGGTGGCAGGTAAAGTGTGTTGTTTTTTG 1366623 36 100.0 30 NNNNNNNNNN .................................... ATTGCGTAAAGGGTAGCTGTAGCCTCTACA 1366689 36 100.0 30 NNNNNNNNNN .................................... AATTTGCACTTTTAATTTGATAATATGTTA 1366755 36 100.0 30 NNNNNNNNNN .................................... CTGGTGGCAGGTAAAGTGTGTTGTTTTTTG 1366821 36 100.0 30 NNNNNNNNNN .................................... ATTGCGTAAAGGGTAGCTGTAGCCTCTACA 1366887 36 100.0 30 NNNNNNNNNN .................................... TAATGTAGAGTTAGCTTATTTCGACAATGA 1366953 36 100.0 30 NNNNNNNNNN .................................... TCATCAAGGTTTACAGAGATGTCATCAAGT 1367019 36 100.0 30 NNNNNNNNNN .................................... GAGATAAGTAGCAGTATACAAGATGATTTA 1367085 36 100.0 30 NNNNNNNNNN .................................... ACGAGATAGGCAACGCTGGGAAAGCTACCA 1367151 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 18 36 30 GTTTTGGAACCATTCAATACAGCATAACTCTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis suggestion: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [364,277] Score: 0/0.18 # # Final direction: R [0,0.41 Confidence: MEDIUM] >NC_011134 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 581380 32 100.0 35 ATGCTGCGCA ................................ AAAAAATCAACTAGCCACTGGTTTCCTTTACGAAC 581447 32 100.0 35 CTTTACGAAC ................................ TCTTGTCTAATATCGTTAATAAACTGATGTCCGTA 581514 32 100.0 34 GATGTCCGTA ................................ TTTTTTGACATTTTTTTGATAAGCTACAGCGATT 581580 32 100.0 35 TACAGCGATT ................................ GACTGTTACCCTAATAATTTTTTTAGTTGTGGTTG 581647 32 100.0 33 GTTGTGGTTG ................................ ATCTTTGTGATCAGTCACTAGTAAGATCGTTAA 581712 32 96.9 35 AGATCGTTAA .........T...................... TAGTCAGTCTCCGCTAAGGCAGGAGACAAGCCCAG 581779 32 100.0 34 ACAAGCCCAG ................................ TACGATTATCATTTAAATACTAAAAAAACTACAG 581845 32 100.0 35 AAAACTACAG ................................ CACATATAGCGGAACAATCGGACGCTATCATGGAG 581912 32 100.0 TATCATGGAG ................................ CCGACACTGCG ========== ====== ====== ====== ========== ================================ 9 32 34 GTCTCGCCCCATACGGGCGAGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [7,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [150,2213] Score: 0.18/0.18 # # Final direction: F [5.18,0.55 Confidence: HIGH] >NC_011145 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 892798 29 100.0 32 NNNNNNNNNN ............................. TGCGCCTCCTGGGACGTGAGGCCGTTCACGCG 892859 29 100.0 32 NNNNNNNNNN ............................. TGCGGCGCCCCGAACTGCTCCGTCTCGAGCTC 892920 29 100.0 32 NNNNNNNNNN ............................. CGTAGGTGATCGCCTTCGACTCGCTCCTCATC 892981 29 100.0 32 NNNNNNNNNN ............................. CGGCTCGCCGACCTGCACCCCGCGGCGGGAGC 893042 29 100.0 32 NNNNNNNNNN ............................. TCCCGCCGGGCCTGCTCCCGCAGCGCGCGCTT 893103 29 100.0 32 NNNNNNNNNN ............................. GCGATTCGGTCGCGCCACTTGCCGGAGCCCTG 893164 29 100.0 32 NNNNNNNNNN ............................T CCAGCAGTGGCAGACCGTGGGCTGGCCGGGAC 893225 29 100.0 32 NNNNNNNNNN ............................. AGCGGGGTCGCCGGCGACTTCGACGCGGACGA 893286 29 100.0 32 NNNNNNNNNN ............................. GTGGACGAGTTCCTCGCGCTCCTCGAGGGCGT 893347 29 100.0 32 NNNNNNNNNN ............................. CTCTTCGAGGGGTTCAGCCGCGGGACGAAGGG 893408 29 100.0 32 NNNNNNNNNN ............................G ACGTAGGCGCCATTCCAGCCGATGACGTAGGT 893469 29 100.0 32 NNNNNNNNNN ............................. CCGCTGCACCGAGGTACGTCGAGCGCGTCATG 893530 29 100.0 32 NNNNNNNNNN ............................. GCCGCGTTCAGCGCGACGGCCATCCAGAAGTT 893591 29 100.0 32 NNNNNNNNNN ............................. CTCCAACGCCGGCTCCGTCACGCGGCTACTGC 893652 29 100.0 32 NNNNNNNNNN ............................. ACCCCGGCCGGCGCCGCGGATACCTACGTCAT 893713 29 100.0 32 NNNNNNNNNN ............................. GCGACGCACCTGGGCGGGCACGCCCACATCAA 893774 29 100.0 32 NNNNNNNNNN ............................. GTCACGAAGGTCCTGTCGCCGATGGCGCTCGG 893835 29 100.0 32 NNNNNNNNNN ............................. GTCCAGGGCACGTCGCACCACGGTGCGCAGGA 893896 29 100.0 32 NNNNNNNNNN ............................. CCGGATCTCGCCTTGGGGACCGATCTTCGCGG 893957 29 100.0 32 NNNNNNNNNN ............................. CGGACCTCTTTCGCCGGCGCTGCCTGGTGTTC 894018 29 100.0 32 NNNNNNNNNN ............................. CAGGCTCCCGAGCTCGGCGCGCGCGTGGAGGC 894079 29 100.0 32 NNNNNNNNNN ............................. GGCGCGGCGGTCGTGAGGACGACGGGCGGGTG 894140 29 100.0 32 NNNNNNNNNN ............................. ATCTCGCCTCCTCGGGTTGACGCTGCGTGGAG 894201 29 100.0 32 NNNNNNNNNN ............................. TGCCTCGCCACGCTCGAGATCGAGGACCAGAG 894262 29 100.0 32 NNNNNNNNNN ............................. GTCGGGTCGTCCTCGACCGCCTTGCACCGCTC 894323 29 100.0 45 NNNNNNNNNN ............................. CTCGCCGAGATGGTCACCGACCCGGGCGTCGCGGCCGCGATGACG 894397 29 100.0 32 NNNNNNNNNN ............................. GGCTGGGCGACCGGCGCGGAGGAGGCAGCGTT 894458 29 100.0 32 NNNNNNNNNN ............................. GGTGAGGAGCCCTTCTAGTCCCAGGGGCGTGT 894519 29 100.0 32 NNNNNNNNNN ............................. TCGCCGAGGGTGATGGGCTGCCAGTACCAGCC 894580 29 100.0 32 NNNNNNNNNN ............................. GTTCCAGCTCGAGCGGCGCGCTCGGCCGCGGC 894641 29 100.0 32 NNNNNNNNNN ............................. GGGTTGGGCAAAACCTCGTTGAACAGCACCGA 894702 29 100.0 32 NNNNNNNNNN ............................. GACATCGAGAACGGCGACCTGGTGCAGCTCTC 894763 29 100.0 32 NNNNNNNNNN ............................. CCATGGGCTCGCGCAAGGTGGCGACCGATGCC 894824 29 100.0 32 NNNNNNNNNN ............................. GCGCCCGCGAACGAACCCACCACGGCGCCGAG 894885 29 100.0 32 NNNNNNNNNN ............................G TTCAGGGTGGACGGGATCGAGGTCGAGTTCGC 894946 29 100.0 32 NNNNNNNNNN ............................. GTCCTCCTCGTCCGCGAGGCGCTCTCGATCGC 895007 29 100.0 32 NNNNNNNNNN ............................. TTCCCGCCCTGTCCAGGCACCGGCCGGTGCCC 895068 29 100.0 32 NNNNNNNNNN ............................. CCGGCGCCCACCAGGTTGACGACGGCCGGGCT 895129 29 100.0 32 NNNNNNNNNN ............................. GTCTGGGGCGACTACTACGACGAGGCCTGCAT 895190 29 100.0 32 NNNNNNNNNN ............................. CCGAAGCCCGGGAGGCTCTCGTGACCGCGCGC 895251 29 100.0 32 NNNNNNNNNN ............................T CCGAGTCCTCGAGCTGGATGGCGTCGAGATCG 895312 29 100.0 32 NNNNNNNNNN ............................. TCCAAGGACGGGGCCAAGAAAAGCCCGCGCAG 895373 29 100.0 32 NNNNNNNNNN ............................. AGGGGAAGGGACGAGAGCCGCCGCCGCGCGGT 895434 29 100.0 32 NNNNNNNNNN ............................. GAGGGAGCGGAGCTGGTCAGCGACCGCGGGGT 895495 29 100.0 32 NNNNNNNNNN ............................. CTGCCGGCGGACGTCCCGGCCGCCGCGGGCGT 895556 29 100.0 32 NNNNNNNNNN ............................. GAGCAGCTCCAGCACGTCACCGCGCTTGGTCA 895617 29 100.0 32 NNNNNNNNNN ............................. GCGCCGAACAGCGCCAGGATCGCGTTGCCGCG 895678 29 100.0 32 NNNNNNNNNN ............................. GGGCTCCGCTACCGCGCGGCGAACACCGAGCC 895739 29 100.0 32 NNNNNNNNNN ............................G TGCGAGCGCTCCTCGCCGTCGCGGTCGTACTG 895800 29 100.0 32 NNNNNNNNNN ............................. GTGCGGGCGGCCCGGGTGGTCAGGGACGCGCT 895861 29 100.0 32 NNNNNNNNNN ............................. GCGCCCGCGCCGGCCGCCGTCGCCGGGTACCT 895922 29 100.0 32 NNNNNNNNNN ............................. GAGTGACCGTCCGGGTCCGGTCCGTAGGCGAC 895983 29 100.0 32 NNNNNNNNNN ............................. CTCGGCGGGAAGCCGTGGCCCACCGGCCCCGC 896044 29 100.0 32 NNNNNNNNNN ............................. GCGATGGCCGTCGTGTCGCTGGCGCGCTCGGG 896105 29 100.0 32 NNNNNNNNNN ............................A CCGATGGCGGCGGCGGTGGCGAGGGAGGTCGG 896166 29 100.0 32 NNNNNNNNNN ............................. CCGCGCGGCGTGGACGCGCTCATCGCGGCACC 896227 29 100.0 32 NNNNNNNNNN ............................. GACGGCCAGCTCGAGGAGCTACCGGCGACTCA 896288 29 100.0 32 NNNNNNNNNN ............................. CTCGAACCGACCGGACCGCGCTGGCGCGTCGA 896349 29 100.0 32 NNNNNNNNNN ............................. ACATCGAGTGCTAGGCGACCGCCGGTGTAGGT 896410 29 100.0 32 NNNNNNNNNN ............................. TCCTTGTCGCCGCCGGCGATGGTCGGGCCGGT 896471 29 100.0 32 NNNNNNNNNN ............................. GACTGCGAGGCGCGTGAACTGCTCCTCGAGCT 896532 29 100.0 32 NNNNNNNNNN ............................T GGGTCTCGCTGCGGCCCTGCCGTTCCAGATGC 896593 29 100.0 32 NNNNNNNNNN ............................. CTTCCACGTCGGCAACGCGCCGGAAGATCGCT 896654 29 100.0 32 NNNNNNNNNN ............................. GCTGGCGGGGTCCAGGGCCTGGCGACTGATGC 896715 29 100.0 32 NNNNNNNNNN ............................. CCGCCTCCGGGTCGGGGGCGGGACTGGTACCT 896776 29 100.0 32 NNNNNNNNNN ............................. CCCGGCACGCAGGCCGCGCCCTACGCGACGCT 896837 29 100.0 1 NNNNNNNNNN .......................T.TAGA NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 67 29 32 GGCTTCCCCGCGTGCGCGGGGATCGACCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [66,121] Score: 0/0.18 # # Final direction: F [0.41,0.37 Confidence: LOW] >NC_011274 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =========================== ====== 2968480 27 100.0 34 NNNNNNNNNN .GC.....TT.T............... GGCTACACGCAAAAATTCCAGTCGTTGGCGCACG 2968541 27 100.0 34 NNNNNNNNNN .................A......... CGATTCTACGGCAACAGGCCAGGCTGCGACCGCG 2968602 27 100.0 34 NNNNNNNNNN ........................... GTGGCCGGGTTGAGTACCGATCGCATTTTTTTCG 2968663 27 100.0 34 NNNNNNNNNN ........................... TTCCCCTCCGGATGGCGGGGATGCTCTTATGGCG 2968724 27 100.0 34 NNNNNNNNNN ........................... ATCAAACATGGAAACCCCTTTAATGAGAGCAACG 2968785 27 100.0 35 NNNNNNNNNN ........................... TCAGGAACGCGCGGCGGAAGAGCTTGGTGTTTGCG 2968847 27 100.0 34 NNNNNNNNNN ........................... GCTGCCTTTCCCGGAGTTCCGGCCCCTAAATTGG 2968908 27 100.0 34 NNNNNNNNNN ........................... TGATTATTGACGACAACAGCACAGACCGGCAGCA 2968969 27 100.0 34 NNNNNNNNNN ........................... AATAATCGGCAATTTGTCCTGGACAGGCACGGCA 2969030 27 100.0 34 NNNNNNNNNN ........................... GAATCTGGAGGCCAACAGCGCGGCGAAATCCTCA 2969091 27 100.0 1 NNNNNNNNNN ........................... NNNNNNNNNN ========== ====== ====== ====== ========== =========================== 11 27 34 GTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [102,298] Score: 0.18/0.18 # # Final direction: R [0,1.83 Confidence: HIGH] >NC_011138 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3159245 29 96.6 32 CAGTGAAGGT -............................ TCTCAATCAGGAAATCTTTGATGAACTCTAAA 3159306 29 100.0 32 GAACTCTAAA ............................. GACCCGCCACCAACATCTACACGCTGGCCTGA 3159367 29 100.0 33 GCTGGCCTGA ............................. CGATTTCGGCTCCTTTTTATAGCGAACCATATC 3159429 29 100.0 32 GAACCATATC ............................. TCAGGTTGAAGTAACAACATAACACTGTTGCG 3159490 29 100.0 32 CACTGTTGCG ............................. CTTTCAATGGCACGAAGAGTCTCACCTGTACG 3159551 29 100.0 32 CACCTGTACG ............................. GCAAAAAGAAAGGCCCGCAAGAGGAAATGCTA 3159612 29 100.0 32 GGAAATGCTA ............................. ACACATACGTGATATTCGCGTTTAATCACTGC 3159673 29 100.0 32 TAATCACTGC ............................. GCATCATCTTCAATGGTCCAGTAGTCTGAACA 3159734 29 100.0 32 AGTCTGAACA ............................. CCCTTTGTACACTCGCTGAGGCATCCATTGAT 3159795 29 100.0 32 ATCCATTGAT ............................. GGCCTTTCACGCCTCTAACTCCTTCCATAACG 3159856 29 100.0 32 TTCCATAACG ............................. TTAGCTATCAAAGCCTGGCTACAACTAAATAA 3159917 29 100.0 32 AACTAAATAA ............................. ACCGTCTTGGTATGGTTTAAATATACGCCTCC 3159978 29 100.0 32 ATACGCCTCC ............................. ATATTCACGTAATTGAGCCGCTTGTTTCTAAT 3160039 29 100.0 32 TGTTTCTAAT ............................. AATAGAGAGAGGCCCCGAAGGATCTCCCGATG 3160100 29 100.0 32 TCTCCCGATG ............................. TGTGTGGCGCTTACTGGTTTGCGCCGGTTTCG 3160161 29 100.0 32 GCCGGTTTCG ............................. TTGTTAACGGTTAACTCGCCTTCTACTTCGCG 3160222 29 100.0 32 CTACTTCGCG ............................. GCTTGAATACCATGATGATGAAACGGCGATCA 3160283 29 100.0 32 ACGGCGATCA ............................. CTAAAATCTGCTGCAGAACTCTTTTGGCGCGC 3160344 29 100.0 32 TTTGGCGCGC ............................. TAACTATTACGAAGCGCTGGAGTTTGCTAAAA 3160405 29 100.0 32 TTTGCTAAAA ............................. GAAGACATTGTAAAGTCCATTCAGTTGCCAGG 3160466 29 100.0 32 AGTTGCCAGG ............................. TAATAGACCTGGCTAAAACTATCTGCTGGTTG 3160527 29 100.0 32 CTGCTGGTTG ............................. GCTTGAAAAATATGATTCAAGTGGTTCATTAT 3160588 29 100.0 32 GGTTCATTAT ............................. TCCTGAACCACCCACCTCAATAGAGCCCGACG 3160649 29 100.0 32 GAGCCCGACG ............................. CTGGTCCTGCCATTTACGTGTCTGGAGTTTTC 3160710 29 100.0 32 TGGAGTTTTC ............................. CACTTAGGACAAAAGAAGCGGCTTCAGATAAC 3160771 29 100.0 32 TTCAGATAAC ............................. TCACACGATTGGTCGCAACCACCATTCAAGCC 3160832 29 100.0 32 CATTCAAGCC ............................. CCAGACTCACGTAGGTCTGAGTTGATTGGACG 3160893 29 100.0 32 TGATTGGACG ............................. GCCCGGCTTTATAACGGCTCTGGCGTTTATAA 3160954 29 100.0 32 GCGTTTATAA ............................. TTTGGAAGAAAACCGCTAAGGTACTCGATGAA 3161015 29 100.0 32 ACTCGATGAA ............................. CCAGAACGCGGCAGCATTGAACACTTAAAAAC 3161076 29 100.0 32 ACTTAAAAAC ............................. TAAGTGATTTAAGGATAAGGCGTGACGGAACG 3161137 29 100.0 32 TGACGGAACG ............................. AATGGCGTGAAACTACTAACAGTGGCATTACG 3161198 29 100.0 32 TGGCATTACG ............................. AACTTCCAAGCCTGACCCTGCTGACAATTCAA 3161259 29 100.0 32 GACAATTCAA ............................. CGGTGCCTGGACCACGCTTCAAGTATCTCATG 3161320 29 100.0 32 GTATCTCATG ............................. TGAAGAAGTCGTTCGTTCTCCTGCTGGTTGCG 3161381 29 100.0 32 GCTGGTTGCG ............................. TTAAAAGTACGTTAAATGCCATATTTGGTCCG 3161442 29 100.0 32 ATTTGGTCCG ............................. TGGCATACTATTGAATATACCTCGTTTAATCT 3161503 29 100.0 32 CGTTTAATCT ............................. CTGTTGAATATTCTAAAGCTAATTTATACGAG 3161564 29 100.0 32 TTTATACGAG ............................. CCGCCGAAGCCCATTCCGTCAATCTGTTTTGA 3161625 29 100.0 32 TCTGTTTTGA ............................. GCTGGTTTTAACAATGTCGTCAAGGTCATGGC 3161686 29 100.0 32 AGGTCATGGC ............................. TGCATGCGTTACGTTGAACCATTGCATTTCTG 3161747 29 100.0 32 TGCATTTCTG ............................. CGGTCGGTATGGCAGGTCGTCCACTTCCTGAG 3161808 29 100.0 32 ACTTCCTGAG ............................. TTCGTAAATGGTAACGGGGCCATTCATCCAGC 3161869 29 100.0 32 TTCATCCAGC ............................. ACGTAGCGACTGTTGGGTTCGGTGGCGGTCAA 3161930 29 100.0 32 TGGCGGTCAA ............................. TAGCAAATGTTCATTTAAACCACCCTCTAACA 3161991 29 100.0 32 CCCTCTAACA ............................. CACTTTGAACTCAGTACCATCAACAGACCAGC 3162052 29 100.0 32 ACAGACCAGC ............................. AGCGTCAGCGGTCAATCCAACCTGTGGCGCAA 3162113 29 100.0 32 TGTGGCGCAA ............................. TTCTTTAATTTTGCGCGATAAATTGCGAGACC 3162174 29 100.0 32 TTGCGAGACC ............................. TTACCAACATACCTACTAAGCAACCCCATAGC 3162235 29 100.0 32 ACCCCATAGC ............................. GCGGCGCTCATTAAATTGGGTGCCAATCTTTA 3162296 29 100.0 32 CCAATCTTTA ............................. GCCCTCCTGCCATCTCTAGAGACATAGAAGCT 3162357 29 100.0 32 CATAGAAGCT ............................. CAGATGCTATTGCTGCCACTGCAGGGGGAAGG 3162418 29 100.0 32 AGGGGGAAGG ............................. ACCTGGGGGCTTACCTTGAAGTTGATCTTTCA 3162479 29 100.0 32 TGATCTTTCA ............................. CCATTTGTTTTGGTGCCACTTTTCACGCAATT 3162540 29 100.0 32 TCACGCAATT ............................. GAGATTGAAGCGAGTGAAGCGGGATTCCAGCG 3162601 29 100.0 GATTCCAGCG ............................. TCTAATTATA ========== ====== ====== ====== ========== ============================= 56 29 32 CGGTTCATCCCCGTGGGCACGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-10.20,-10.20] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [61.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [241,74] Score: 0.18/0.18 # # Final direction: R [0.55,0.68 Confidence: LOW] >NC_011294 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2961372 29 89.7 32 GGTGAAACGT --..............A............ TATTTATAAGCGTGTCATCTATGCAACCCAAC 2961433 29 100.0 32 GCAACCCAAC ............................. ACCTGCCCGACCCAATAAGGGGGCCCTCGTGA 2961494 29 100.0 32 GCCCTCGTGA ............................. GGCCGCTGGTCAAATTCCCAATCTGAGCAATC 2961555 29 100.0 32 CTGAGCAATC ............................. ATAGCCCCGGCAGCGATAGCTAAACCAGTTCC 2961616 29 100.0 32 AACCAGTTCC ............................. GCCTCAAAATCTCTCGGTGAGATGTAAGCGTC 2961677 29 100.0 32 TGTAAGCGTC ............................. ACCAGTGGTCAGCGGCGGATGAATTTGCCCTG 2961738 29 100.0 32 ATTTGCCCTG ............................. GAGAATGCTCATGCGCGTGAGCGCCATATATT 2961799 29 100.0 32 GCCATATATT ............................. AGGCGGACCGAAAAACCGTTTTCAGCCAACGT 2961860 29 100.0 CAGCCAACGT ............................. ACTAAAACTA ========== ====== ====== ====== ========== ============================= 9 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [18,96] Score: 0.18/0.18 # # Final direction: R [0,2.1 Confidence: HIGH] >NC_011294 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =========================== ====== 2978040 27 100.0 34 NNNNNNNNNN .GC.....TT.T............... GGCTACACGCAAAAATTCCAGTCGTTGGCGCACG 2978101 27 100.0 34 NNNNNNNNNN ........................... CCGATTAAGATCCGCAGTCTGCATCAGTAACTCG 2978162 27 100.0 34 NNNNNNNNNN .................A......... CGATTCTACGGCAACAGGCCAGGCTGCGACCGCG 2978223 27 100.0 34 NNNNNNNNNN ........................... ATCAAACATGGAAACCCCTTTAATGAGAGCAACG 2978284 27 100.0 35 NNNNNNNNNN ........................... TCAGGAACGCGCGGCGGAAGAGCTTGGTGTTTGCG 2978346 27 100.0 34 NNNNNNNNNN ........................... GCTGCCTTTCCCGGAGTTCCGGCCCCTAAATTGG 2978407 27 100.0 34 NNNNNNNNNN ........................... TCATGCGCTATAAAAATCAGACTGTCACATGCCG 2978468 27 100.0 34 NNNNNNNNNN ........................... TGATTATTGACGACAACAGCACAGACCGGCAGCA 2978529 27 100.0 34 NNNNNNNNNN ........................... AATAATCGGCAATTTGTCCTGGACAGGCACGGCA 2978590 27 100.0 34 NNNNNNNNNN ........................... GAATCTGGAGGCCAACAGCGCGGCGAAATCCTCA 2978651 27 100.0 1 NNNNNNNNNN ........................... NNNNNNNNNN ========== ====== ====== ====== ========== =========================== 11 27 34 GTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [102,298] Score: 0.18/0.18 # # Final direction: R [0,1.83 Confidence: HIGH] >NC_011145 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 899404 28 100.0 33 CCGGTCGCGG ............................ CCGGTGATGTTCTCGCGGTCGTCGGTCCTGGGG 899465 28 100.0 38 GGTCCTGGGG ............................ ACCACGTCGACGTTCTGCGGCAGGAAGACCTGGGCTTC 899531 28 85.7 33 CCTGGGCTTC ----........................ CGACCATGTACGCCGGTCTGAGGCTCATCCCGG 899592 28 100.0 33 CTCATCCCGG ............................ CGCGCAAGCACAGGATCGTCGCTCCCGTGTTTG 899653 28 100.0 33 CCCGTGTTTG ............................ CCGTGGAGCCAGCCGTCGTTCGCGGAGAACCAA 899714 28 100.0 33 GGAGAACCAA ............................ ACGCACGAGGAGGTCTTCCTCCTCGGCATCGGG 899775 28 100.0 CGGCATCGGG ............................ GCGGTGGAGGTGCCCGCCTCGTCCTCGGTCGC ========== ====== ====== ====== ========== ============================ 7 28 33 GCTTCCCCGCGTGCGCGGGGATCGACCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-9.30,-9.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [18.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [412,354] Score: 0/0.18 # # Final direction: R [0,0.64 Confidence: HIGH] >NC_011145 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 899098 31 93.5 30 TCGTCTCTCT --............................. GACCCCCGACCTTCACCGCGCGCCCCGCGT 899159 31 100.0 30 CGCCCCGCGT ............................... CGAGGTCCGGCTCGAGGCGCTGGCCGAGCG 899220 31 100.0 30 TGGCCGAGCG ............................... ACCGGGAAGTGGCTGTTCCAGTGCCAGTGC 899281 31 100.0 GTGCCAGTGC ............................... GGCCACAGCA ========== ====== ====== ====== ========== =============================== 4 31 30 CGGGCTTCCCCGCGTGCGCGGGGATCGACCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-14.00,-14.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [35.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [106,845] Score: 0.18/0.18 # # Final direction: R [0.27,1.33 Confidence: HIGH] >NC_011247 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 94900 19 100.0 26 NNNNNNNNNN ................... TTGACTTCTATTTGCAGAGTAATTCT 94945 19 100.0 26 NNNNNNNNNN ................... CTGGTCCTTATTTGCAGAATAATTTT 94990 19 100.0 26 NNNNNNNNNN ................... TTGTCCTCTACTTACAGGACGACTTG 95035 19 100.0 26 NNNNNNNNNN ................... TTGTCCTCTACTTACAGGACGACTTC 95080 19 100.0 1 NNNNNNNNNN ...........CC...CAC NNNNNNNNNN ========== ====== ====== ====== ========== =================== 5 19 26 CACGATCATAATTTGGTCT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.16%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [382,700] Score: 0/0.18 # # Final direction: F [0.41,0 Confidence: MEDIUM] >NC_011205 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3137409 29 100.0 32 NNNNNNNNNN AC.GC.....TT.T............... GGCTACACGCAAAAATTCCAGTCGTTGGCGCA 3137470 29 100.0 32 NNNNNNNNNN .G........................... CCGATTAAGATCCGCAGTCTGCATCAGTAACT 3137531 29 100.0 32 NNNNNNNNNN .G........................... TGATTATTGACGACAACAGCACAGACCGGCAG 3137592 29 100.0 32 NNNNNNNNNN ............................. TGATTATTGACGACAACAGCACAGACCGGCAG 3137653 29 100.0 32 NNNNNNNNNN ............................. AATAATCGGCAATTTGTCCTGGACAGGCACGG 3137714 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 6 29 32 CAGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [5,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [100,121] Score: 0/0.18 # # Final direction: R [0,0.78 Confidence: HIGH] >NC_011256 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 24891 32 100.0 22 NNNNNNNNNN .GTGTC...T.TAATA................ CAGTATCAATTTTATTATTGAG 24945 32 100.0 22 NNNNNNNNNN ................................ CAGTATCAATTTTATTATTAAG 24999 32 100.0 34 NNNNNNNNNN ................................ TAATATCAATTTTATTATCAAGTTCATTAAATTT 25065 32 100.0 22 NNNNNNNNNN .GTGTC...T.TAATA................ CAGTATCAATTTTATTATTAAG 25119 32 100.0 1 NNNNNNNNNN ................................ NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 5 32 25 ATCTCTAATATCTGATTTTAAGTTATTTTCAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:81.25%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [11-11] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [85.0-85.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [221,340] Score: 0/0.18 # # Final direction: R [0,0.41 Confidence: MEDIUM] >NC_011296 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1074817 30 100.0 37 TTTTAAACGG .............................. TTGTTTTGCCAAATTGATATTTCCAACCAGTTCCTCC 1074884 30 100.0 36 CAGTTCCTCC .............................. TTGTATTCAGACAATAATTCTGTTCCTTCAAGCTTT 1074950 30 100.0 37 TTCAAGCTTT .............................. AATAATCAAAATTATCAAGATTATCAGAGTTGTTATT 1075017 30 100.0 35 AGTTGTTATT .............................. GTTTTTTGGTGCATTTTCAAGACTTTTTATTGTTA 1075082 30 100.0 36 TTTATTGTTA .............................. GGTAAGTTATGTTCAGCCTTATGACCTTGTTAGAAC 1075148 30 100.0 35 TTGTTAGAAC .............................. TTGTATTCTTCTTTAAAAATCACATAGCCATTTAT 1075213 30 100.0 36 AGCCATTTAT .............................. GTATCAGCTGTTGCATCTGCTGTTACAACAAACTGC 1075279 30 100.0 35 AACAAACTGC .............................. GTTTGATACAGCTGCAGGATAGCCATTGACCTCTC 1075344 30 100.0 36 TTGACCTCTC .............................. TTAAAACTTCTCCATCTCTGGCTACGGTTCTAAGAA 1075410 30 100.0 39 GTTCTAAGAA .............................. AACTATTTGTGGAGCAAGATATGCAGACAGCACTGCTAC 1075479 30 100.0 35 GCACTGCTAC .............................. TTCAACTTCAACCCCGTATCTTGGAGTTGTTTCAG 1075544 30 100.0 36 GTTGTTTCAG .............................. CGCATTTACTTATAACAATTATCATTTCATTTCCTT 1075610 30 100.0 36 TCATTTCCTT .............................. CATTTAAGCCCCACCAATAAGCATAGAATAAATAAA 1075676 30 100.0 35 AATAAATAAA .............................. AAGCTCTCAGAGATAACATATGATGCAGTCGTCGG 1075741 30 100.0 37 CAGTCGTCGG .............................. CGAGGCTCAAACAGGTGGAATACTTCAAACACAAGGG 1075808 30 100.0 35 AACACAAGGG .............................. ACTGTATTCTGTTTTTGTATCATTGAAGTGTGAAA 1075873 30 100.0 37 AAGTGTGAAA .............................. ATTTCTCTCTTAAAATACCTTTTAAAAATTTTTTTTG 1075940 30 100.0 37 ATTTTTTTTG .............................. CTTTACACTCCATTGCAACTTCATAAACCATATTATT 1076007 30 100.0 37 CCATATTATT .............................. ACATTTTGCCTGAACAGATATGTTTGCTCTAAGATGA 1076074 30 100.0 36 TCTAAGATGA .............................. TATCTATACCTTAACTCTCTCATACCTACCCTCTTT 1076140 30 100.0 39 TACCCTCTTT .............................. CCATGACGGCTTCAACACATCTTCAATTCTCGTTAAACC 1076209 30 100.0 38 TCGTTAAACC .............................. TTCAATTTCTAATTTTTTATTGTGTTCCATTTTTCTCC 1076277 30 100.0 41 ATTTTTCTCC .............................. CTTGAAAAAACTTTTTTAAATCAATAACTTCATTATCCCGC 1076348 30 100.0 35 ATTATCCCGC .............................. TATTCTATAACTTTACCACCCTCATCCACACACAC 1076413 30 100.0 36 CCACACACAC .............................. ACTTTAATACTTCAAATTTCCTTTTACCTTTAGACA 1076479 30 100.0 37 CCTTTAGACA .............................. GTATTATTTGACATACCGCAAGCAAGCAAGAGATAGA 1076546 30 100.0 35 AAGAGATAGA .............................. TTTTATAACGCTCCCACACCATCTCCGCACTCGTC 1076611 30 100.0 38 CGCACTCGTC .............................. AACAAAATCGAACGAGGTTTAACGCTTTCATCAAACTC 1076679 30 100.0 35 CATCAAACTC .............................. CCATACAAACCACCTTGCCCCAAAACATCGCATGG 1076744 30 100.0 39 CATCGCATGG .............................. CTTTGTCAAGAACAAGCTCTTTCCATACTTTTGCACATT 1076813 30 100.0 37 TTTGCACATT .............................. ACAACAAACTCATACATTTGAAGTGCTCCCTGAGCCC 1076880 30 100.0 CCCTGAGCCC .............................. AGAGAAGTTC ========== ====== ====== ====== ========== ============================== 32 30 36 GTTTTGAGCCTACCTATGAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [696,69] Score: 0.18/0.18 # # Final direction: F [5.55,0 Confidence: HIGH] >NC_011353 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 3702620 30 100.0 31 NNNNNNNNNN ................AT............ GCGGCACGCTGGATTGAACAAATCCCTGGGC 3702681 30 100.0 31 NNNNNNNNNN .............................. AACCGAAACACACGATCAATCCGAATATGAG 3702742 30 100.0 31 NNNNNNNNNN .............................T TTGGTGACAGTTTTTGTCACTGTTTTGGTGA 3702803 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 4 30 31 CGGTTTATCCCCGCTGGCGCGGGGAACACA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [5,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-14.20,-14.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [83,97] Score: 0/0.18 # # Final direction: R [0,1.55 Confidence: HIGH] >NC_011282 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================= ====== 185121 17 100.0 32 TTTAACGGTG ................. CATTGCCTCTCAGCACCTACCGGTGCGTTAGT 185170 17 94.1 51 GTGCGTTAGT .....C........... TCCCGTTGTTTCTGCCCGGCATAACCGCCGATGTCCGGCCATTTAACGGTG 185238 17 100.0 32 TTTAACGGTG ................. CATTGCCTGTCAGCACCTACCGGTGCGTTAGT 185287 17 94.1 GTGCGTTAGT .....C........... TCCCGTTGT ========== ====== ====== ====== ========== ================= 4 17 38 CGTCGAATACAGTAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.94%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [46.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [87,44] Score: 0/0.18 # # Final direction: F [0.68,0 Confidence: HIGH] >NC_011295 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1263870 30 100.0 40 AAAGAAGGGG .............................. GCTTTCTTCGAGTCAATGGACTCTGTAACACGTTCCTTGA 1263940 30 96.7 38 CGTTCCTTGA .......A...................... AAGCCTTGCTGTGAGAGAAGACTTTATATGCCAGGGGC 1264008 30 100.0 36 TGCCAGGGGC .............................. CAATGAGTCTGGGGTTGAAATGAATAAGAGGAGCAT 1264074 30 100.0 36 AGAGGAGCAT .............................. CACGCTATGTCTTTAACACGCTGTTCCACCATCATA 1264140 30 100.0 37 CACCATCATA .............................. ATGGCAGGAATTGTATTTCGTAGTGGCGAGCAAAAAG 1264207 30 100.0 36 GAGCAAAAAG .............................. TTTTCAATTCCTGGTTGTACGACTCACCAATCTTCA 1264273 30 100.0 36 CCAATCTTCA .............................. TTTTTAACTGGAGGACTAATCCTCCAGTTCCTCCAA 1264339 30 100.0 37 GTTCCTCCAA .............................. TGGATAGTTATGGCGATTCAATGTACAGCAATCATAA 1264406 30 100.0 36 GCAATCATAA .............................. TTTAATTAGGCCGAAACAAGGATTTAAGGAATTGAT 1264472 30 100.0 36 AGGAATTGAT .............................. CCGACGAGGTATTGTTGGGAAGAGTTAGGGAGTATA 1264538 30 100.0 37 AGGGAGTATA .............................. TTTTTTACGGTGAGAGAGAAGTGCTAAGGGGACATAT 1264605 30 100.0 36 GGGGACATAT .............................. TTTGCTTTTCAAAATGCCGAACGCAGACATAAGGCC 1264671 30 100.0 35 ACATAAGGCC .............................. ATTTGCGAGAATGGTGCTTGCGATGTATTCACGAT 1264736 30 100.0 38 TATTCACGAT .............................. TACCTACACAACTGCTATGCTCACAAAACGACATGCCG 1264804 30 100.0 36 CGACATGCCG .............................. TCTAAATTTTTTACACCTTCCTTACTCACGAAGTTT 1264870 30 100.0 37 CACGAAGTTT .............................. ACTGAACCTTCACCGCGCCGAACTACCTCTTCATCGA 1264937 30 100.0 TCTTCATCGA .............................. ATTTGCGAGA ========== ====== ====== ====== ========== ============================== 17 30 36 GTTTCAATCCCTTGTAGGTAAGCTAGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [121,101] Score: 0/0.18 # # Final direction: R [0,5.28 Confidence: HIGH] >NC_011296 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1929305 29 100.0 37 NNNNNNNNNN ............................. AGGATTTAATCTTTTCAAAAATCTGTCTAACCCACTG 1929371 29 100.0 37 NNNNNNNNNN ............................. AAGTGTATCCTCATCTTTTCACAATCTGCCTTTATCA 1929437 29 100.0 36 NNNNNNNNNN ............................. TTCCATCTTCTGTTTGAACCTCTTCCATCTGATAAC 1929502 29 100.0 37 NNNNNNNNNN T............................ TAAGAACGGTGCTGACTTCACTTACTTCATCTGTCAC 1929568 29 100.0 35 NNNNNNNNNN ............................. AGAATACAGAGTAATCAATTGCAGATTTCTCCAGA 1929632 29 100.0 36 NNNNNNNNNN ............................. TTCAGATTCATCAAAGAAAATTTTTGGTGTCATTGC 1929697 29 100.0 36 NNNNNNNNNN ............................. ATTGAGAAGAAAAGCAGAAAGAGAATTATTTTTAGA 1929762 29 100.0 37 NNNNNNNNNN ............................. TGGATATTTTTCGCTGGCGTAGGTAATGGCAAGTGCA 1929828 29 100.0 36 NNNNNNNNNN ............................. GAAAAATACTTTTGGAATTAGCAACTAAATATAACT 1929893 29 100.0 37 NNNNNNNNNN ............................. TGAGCGGATATAACTTCATTGAGCTTGCGTGGGGAAG 1929959 29 100.0 38 NNNNNNNNNN ............................. TGCTTCTTGCTTAGCTTTCCTTTCTAATTCTAAATCGT 1930026 29 100.0 36 NNNNNNNNNN ............................. TATTCTACCCCAAAGATATTCCATTGCGAGGTCTTG 1930091 29 100.0 38 NNNNNNNNNN ............................. AAAATATATTTTATAAGTTTATTCCTACCTCCAGTAAA 1930158 29 100.0 37 NNNNNNNNNN ............................. TTAACCGTGCAATAAACATACTTGTGAACTATACAGT 1930224 29 100.0 38 NNNNNNNNNN ............................. CATACCTTTCGTGAGGTGGTAGATGCTAAGGATTATTG 1930291 29 100.0 36 NNNNNNNNNN ............................. TCGCAATCCCTCCTGCTATGGTAGTCCCTCCTCTGA 1930356 29 100.0 36 NNNNNNNNNN ............................. TTTTTTAGCTCTTGTTTGCTCTGTTTTCTTGCTAAG 1930421 29 100.0 36 NNNNNNNNNN ............................. ACAATATAAATAAGGCAGTTTCTCTTCAGGAAAAAA 1930486 29 100.0 37 NNNNNNNNNN ............................. ACGCATTAATGTTGCTGAACTTGCAAGGGTAATTGGA 1930552 29 100.0 37 NNNNNNNNNN ............................. TTGAGGATGTCCGTTGGCATGACCTGCGGCGAACATT 1930618 29 100.0 35 NNNNNNNNNN ............................. GGGGATTGTGGATTACAGATATGACAGATTCAATC 1930682 29 100.0 36 NNNNNNNNNN ............................. AGGGACTAAATCCTCTGGCGGGGTTGTTAAGAAAAA 1930747 29 100.0 37 NNNNNNNNNN ............................. ACAATTAACAAAGAGTACCCCGCCGAACCGAAAACGT 1930813 29 100.0 38 NNNNNNNNNN ............................. AGGAAGAAATAGTAAAGATACTGCAGCATACTCCCGGT 1930880 29 100.0 36 NNNNNNNNNN ............................. GGTTCTAAAAACAGACAGAAAATTATAGGGCTTATA 1930945 29 100.0 36 NNNNNNNNNN ............................. TTTTTATAATTTATCAGAACATTACTGCAGGGTATA 1931010 29 100.0 36 NNNNNNNNNN ............................. ATTGAAGGAGTAATAAAAAGATTCTCTGCATCAGGC 1931075 29 100.0 37 NNNNNNNNNN ............................. TTTACATAAGTGAATCAAGGGTAATTATTAAAACTGT 1931141 29 100.0 38 NNNNNNNNNN ............................. TAGAAAGAAATCAGAAAAAGAAGCTCTATACATACTTT 1931208 29 100.0 37 NNNNNNNNNN ............................. GATGAAGAAAAAATTAGACATAGGACAGCTTGACCTG 1931274 29 100.0 39 NNNNNNNNNN ............................. GAGGGGAATGTGTTTAAGGGAGCAATTGAAAATACCTGC 1931342 29 100.0 40 NNNNNNNNNN ............................. CTTGAGGCTGCCTGTCAGAGGCTTGGCTTGTCTATGCAAG 1931411 29 100.0 36 NNNNNNNNNN ............................. TTTAATAAATAATGCTAATATTTCATTAAAAGCAAA 1931476 29 100.0 36 NNNNNNNNNN ............................. GATGTTAAGAGTAAAAACTCCTATAATTAATCCTGC 1931541 29 100.0 36 NNNNNNNNNN ............................. TTCTCTTTGAAGTTCCTATAGAGAGAATTAAATTAA 1931606 29 100.0 36 NNNNNNNNNN ............................. GCATTATATAGAGAAATTCAGTACCACCGCCTTTGG 1931671 29 100.0 35 NNNNNNNNNN ............................. GGAGTTGATGGATTTATATAATTATCAGGACTCGA 1931735 29 100.0 36 NNNNNNNNNN ............................. AGCATGTATTTGCAAGAAGTGAACAAGAGCTTGAAC 1931800 29 100.0 37 NNNNNNNNNN ............................. GAATTTGAAGTTGAAATTTCTAATGATGATTTCTTTA 1931866 29 100.0 38 NNNNNNNNNN ............................. GGCAACCACTGCTGTAAAAGACAAAAAAGTAATCTCTG 1931933 29 100.0 36 NNNNNNNNNN ............................. TACTGCTTCTATTGTTATGTAAGCAATTTCTCCAAC 1931998 29 100.0 38 NNNNNNNNNN ............................. GGCAACCACTGCTGTAAAAGACAAAAAAGTAATCTCTG 1932065 29 100.0 36 NNNNNNNNNN ............................. TACTGCTTCTATTGTTATGTAAGCAATTTCTCCAAC 1932130 29 100.0 37 NNNNNNNNNN ............................. ATACTTGTTTTACAGAACACTAAAAAACACAACCGAA 1932196 29 100.0 37 NNNNNNNNNN ............................. AACATGTCAGTTTTCTCATTGGCTTGAGTATCTTCTA 1932262 29 100.0 38 NNNNNNNNNN ............................. AGATGTGCTGATGAGCGAGAAAGAGTTTTCAGAGAAGA 1932329 29 100.0 37 NNNNNNNNNN ............................. GAAGCTAAGAAGGTTGAAGAAAAACCTGCTCAGAAGA 1932395 29 100.0 36 NNNNNNNNNN ............................. TGTAAAGTAAACTACGTAACGTAGTTTACTTAAAAC 1932460 29 100.0 37 NNNNNNNNNN ............................. GTTGTTGCCTTGCCTTCGTGCTTTTCAATTTGCACTT 1932526 29 100.0 40 NNNNNNNNNN ............................. CAACTGTAACTGTTAAAGATGGTGAAACCACTGCTATTGT 1932595 29 100.0 38 NNNNNNNNNN ............................. TCTTTTTTAGAATGAATTCTATAATTCATCATTATATT 1932662 29 100.0 35 NNNNNNNNNN ............................. TTAACATCTCCCTTGTCAATCGCAGATACAGGCAA 1932726 29 100.0 35 NNNNNNNNNN ............................. ATGGAAATTTATATGTAATTTTGAAAGTAGTTGCT 1932790 29 100.0 35 NNNNNNNNNN ............................. CGTTGATTGCATGTTCTTAAGCACTATCTGCATTG 1932854 29 100.0 35 NNNNNNNNNN ............................. ATCTATCCCTTTTTCCGCACAGATGCGGGTTCTTG 1932918 29 100.0 37 NNNNNNNNNN ............................. ATGCCATAAGGGCTGTGGCAATAGTAGATGCACCAAT 1932984 29 100.0 36 NNNNNNNNNN ............................. TTATACTTATTTTTGGGTTCTTGAAAAACAATCAAG 1933049 29 100.0 37 NNNNNNNNNN ............................. ATATTTGCCAGAAAAGTTAAAGCAATACCTTATCTCA 1933115 29 100.0 37 NNNNNNNNNN ............................. TATTACTCTCAACCCAATCACGAATTTGTTCTGTTGT 1933181 29 100.0 36 NNNNNNNNNN ............................. TGCTTGAAGAACTGAAAGAACCGGAACCATACTGCA 1933246 29 100.0 37 NNNNNNNNNN ............................. TGAACCCGTAATTATTCAAGATGCCGCAATATTCTTT 1933312 29 100.0 37 NNNNNNNNNN ............................. TGCTTGTTGACCATAACAGAAACTTTTTAGCTCCACA 1933378 29 100.0 37 NNNNNNNNNN ............................. GAGGGTGAGGACATTTGTATTATTTGATAGAATAAGT 1933444 29 100.0 38 NNNNNNNNNN ............................. TTTTTGCATCTATATATGCTGTTTATATAATTTTTAAA 1933511 29 100.0 43 NNNNNNNNNN ............................. ATTCTCATACTCAAAAAGAAAAGCCCTTTCTGGCTCACCATCT 1933583 29 100.0 36 NNNNNNNNNN ............................. AATTTTATACTTTGCAAATTCTGTTTTTTATGTTTG 1933648 29 100.0 38 NNNNNNNNNN ............................. GAATTCATGAAAAAATGCCAGAAAGCTAAATCTTTGAT 1933715 29 100.0 36 NNNNNNNNNN ............................. GAGTCCATACTGTGTTGGGCAGTATAAAGAGCTCCG 1933780 29 100.0 37 NNNNNNNNNN ............................. GCCATTTTTTTGTTTAGATTTCAACTTCAAAGTCTTC 1933846 29 100.0 38 NNNNNNNNNN ............................. TAATATTGACAAACTTGAAAATGCAAGATGTATGATGC 1933913 29 100.0 35 NNNNNNNNNN ............................. TATGATGCTGGACCTGATAAAACATTTAGAAAGCA 1933977 29 100.0 36 NNNNNNNNNN ............................. GTTCAACAAACTCTTTGTGTTTGATTTTATTGACAA 1934042 29 100.0 37 NNNNNNNNNN ............................. GAGACCAGATACAAGAGCATTAGGAATAGCATTAAGA 1934108 29 100.0 36 NNNNNNNNNN ............................. GAAAACCACGTTTTGACAATAGAAGGTCTTACAAAA 1934173 29 100.0 37 NNNNNNNNNN ............................. AAATCATCATAACCTTCTGAAGCACTTCTGGAACTGT 1934239 29 100.0 41 NNNNNNNNNN ............................. AAGTTTCTTAACTTAGTATAAAAATTATCACAAATAAATTC 1934309 29 100.0 37 NNNNNNNNNN ............................. CCGTTGGTAGTGGAGACAGGCTTTGTTGGAAGTTTGA 1934375 29 100.0 38 NNNNNNNNNN ............................. ATCACATATGCAAAAAGATACGCATTGTCTTTAGCTCT 1934442 29 100.0 36 NNNNNNNNNN ............................. GATGCAAAAGGATGTTACAGAAAATATGTTAAAAAA 1934507 29 100.0 37 NNNNNNNNNN ............................. CAACGGGACAGAATGTTACTGTTGATGAAGTTGAGAT 1934573 29 100.0 38 NNNNNNNNNN ............................. ATTTCAAGTTCTAAATCCTTAAAATACCTTGTATCTAT 1934640 29 100.0 36 NNNNNNNNNN ............................. ACAATAAAAGATCCAAGTTGCTGTTGCGTTAAAACA 1934705 29 100.0 35 NNNNNNNNNN ............................. ATAGTCTTTGCCAAAAAGTGTGGCTTTACCAATAT 1934769 29 100.0 36 NNNNNNNNNN ............................. GTTATAAAGCATATTGTTATGTCTCTGAACTTCTTT 1934834 29 100.0 37 NNNNNNNNNN ............................. TCACATATGCAAAAAGATACGCATTGTCTTTAGCTCT 1934900 29 100.0 37 NNNNNNNNNN ............................. AGTGAACTTTGTTAGACAAATCTAACTTAGTGAGTGA 1934966 29 100.0 38 NNNNNNNNNN ............................. GTAGACCCATCGCCACATATGTCTCCAATTCAACAATA 1935033 29 100.0 36 NNNNNNNNNN ............................. TGAAATTCCTAAAGACAAAATCATCTATAACAAAGA 1935098 29 100.0 35 NNNNNNNNNN ............................. GTATGTATCGGCTTTATTGCAATCAATATCTTACA 1935162 29 100.0 35 NNNNNNNNNN ............................. GTTGCAAGAGCTTTTATCCCAACCAGAGCTAATCT 1935226 29 100.0 37 NNNNNNNNNN ............................. TGAATGCTTGAGATATTTAGTTTATAACCGAACAAGA 1935292 29 100.0 37 NNNNNNNNNN ............................. TGTTGCGTTCAAAATCTCTACTTCTTTCTCTAAGCGT 1935358 29 100.0 37 NNNNNNNNNN ............................. CCTGAGTTAGTTGAGGCGGGGAGAGGGGTCCTTCCTA 1935424 29 100.0 36 NNNNNNNNNN ............................. TTAAACGAATGGAATGAGACAATGATAAAGCGATAC 1935489 29 100.0 36 NNNNNNNNNN ............................. TGTGTATGCCAGAAGAAATTGTTTCGGCATTTTCTT 1935554 29 100.0 36 NNNNNNNNNN ............................. TATCAGCAGTTCGTCAAGTTTAATGTTTTTAACAGA 1935619 29 100.0 41 NNNNNNNNNN ............................. AATATCAAATTTATTACTCAACCAGCAAGGACAATAATAAC 1935689 29 100.0 37 NNNNNNNNNN ............................. ACTGTACTGACACAACAGCGGAAATAACAAACTACAA 1935755 29 100.0 36 NNNNNNNNNN ............................. CTCTTCTATGTTTTTGTCTTTGACATTAACCCCTTC 1935820 29 100.0 35 NNNNNNNNNN ............................. TTTGTTTTTTGATAAGTTACTATTTTCGTTGTTAT 1935884 29 100.0 36 NNNNNNNNNN ............................. TGCATCTGCAGGAATGCTTACAAGAGATATTTCAAG 1935949 29 100.0 37 NNNNNNNNNN ............................. TAACTTTCCCTGAAAGTGCTGACATTTGAACCCATAC 1936015 29 100.0 37 NNNNNNNNNN ............................. TTATACTGCTCTACTGCATCGTAGGCAAGTCTAAATA 1936081 29 100.0 37 NNNNNNNNNN ............................. TCCCATCCTGCCCTGGCAAATTCTCTATAACATAAAC 1936147 29 100.0 36 NNNNNNNNNN ............................. TCCTGCAAAAATCAATCTTCTTAAAATTACTGCTTT 1936212 29 100.0 35 NNNNNNNNNN ............................. CTTGTTTTTACATCGTGAACCTTCCCCTTGAAACA 1936276 29 100.0 36 NNNNNNNNNN ............................. TGGTGCAGGTGGCTCTGGTGGAGCTGCGGGCTCTGC 1936341 29 100.0 35 NNNNNNNNNN ............................. TCGTCCGCCCACTCGCTTACCGTCTGCTTTGGTCT 1936405 29 100.0 36 NNNNNNNNNN ............................. AACTTCATCCCATGCAAGCCCTCCAGGATGGAATCT 1936470 29 100.0 38 NNNNNNNNNN ............................. TAAAAGCTATTCTGACATCTTTGGCAGTTTTTTCTGAA 1936537 29 100.0 36 NNNNNNNNNN ............................. AACTTCAACTGGGCACATATTCCAGATGCAGACTTA 1936602 29 100.0 36 NNNNNNNNNN ............................. AAAATTTCCAAACTGCCAAAAACCTTTATTTTTTCA 1936667 29 100.0 37 NNNNNNNNNN ............................. AGACAGGCTTTGTTGGAAGTTTGACGGGGAGAGTATT 1936733 29 100.0 37 NNNNNNNNNN ............................. GACCTTGATAGAAAAATCACTATTACCACAAGACCTC 1936799 29 100.0 40 NNNNNNNNNN ............................. TTTGCTCCCTTTTTCGCACAAATTGGGCAACTGGTAGGTA 1936868 29 100.0 37 NNNNNNNNNN ............................. TTGGCACACATATCAGATATTCACCATCTTTGATTGT 1936934 29 100.0 36 NNNNNNNNNN ............................. AAGCTGGATGCTTGACTTCACAGTCACTGAACCATC 1936999 29 100.0 37 NNNNNNNNNN ............................. CTGGTGGATTATCACGCTTCTGGTTGGCAATTTAGTC 1937065 29 100.0 36 NNNNNNNNNN ............................. ATGAAATCCTCAGTAGGAACAAAGATGCCCCCACAC 1937130 29 100.0 35 NNNNNNNNNN ............................. GATGCTGGACCTGCAAACATTGTTGAGGCTATTGG 1937194 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 121 29 36 CTTTATATCCCACATGGTTCAGATGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.07%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [229,494] Score: 0.18/0.18 # # Final direction: R [0,0.59 Confidence: HIGH] >NC_011296 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 632030 36 100.0 39 ATGATAGGCA .................................... TTCATTGCTTATTTTATCAATTTCATCTTCAACTTGTTT 632105 36 100.0 35 CAACTTGTTT .................................... TTCTCTTTTAAATAGATATCGTGAGGGCAAATTTT 632176 36 100.0 34 GGCAAATTTT .................................... CTAAAGTATCCTTTATCTCTTGTATAAGAGATTG 632246 36 100.0 37 TAAGAGATTG .................................... ATAATTTGATAGTTCTAAATCTTGTCCTATTATCTCA 632319 36 100.0 35 TATTATCTCA .................................... CGCTAGTTGGTATAACTACATGATAAAAATCAGTT 632390 36 100.0 32 AAAATCAGTT .................................... TTTTTCTTTTTTACAATATTCTCTACTTCTTT 632458 36 100.0 36 CTACTTCTTT .................................... ATCAAAAACCACTATTTCCTTTGCTTCTTTTTGTTG 632530 36 100.0 36 CTTTTTGTTG .................................... TTTGACTATGTCATTTGTTTGACATGGGAAAGTTGA 632602 36 100.0 35 GGAAAGTTGA .................................... CAATTTCAATTAATTCTTTCATTTTCCCCTCCGAT 632673 36 100.0 36 CCCCTCCGAT .................................... TTCAAGTCCCATCTCCTTGTAAATTTTCTTCTTCTC 632745 36 100.0 36 TCTTCTTCTC .................................... TTTAAGGCGGCGATAAGTGTCTCTTGCTTTTGTCCT 632817 36 100.0 33 CTTTTGTCCT .................................... CCATTTTTACCTCCCTTTTTGGTTTTGTAAAAA 632886 36 100.0 35 TTTGTAAAAA .................................... TAATTGGTTTAATGATACCCCGATATGGGTCCAAT 632957 36 100.0 34 TGGGTCCAAT .................................... ATTTTGTTCCTCTTCCTTTGCCCACTCCCAATCT 633027 36 100.0 37 CTCCCAATCT .................................... ATAACGTATCATATCAAATATTACAAGGATTTTCCCT 633100 36 100.0 35 GATTTTCCCT .................................... TTAATCCATAAGTTATATTGTCTTCTTTAAAATAA 633171 36 100.0 36 TTTAAAATAA .................................... ATCCATTTTTGAGTGCATTTTCAAAGACCTGAAGTC 633243 36 100.0 36 ACCTGAAGTC .................................... CAAGCACTATAGCAGCACCACCGCACACAAACCCAA 633315 36 100.0 35 ACAAACCCAA .................................... TGCAGTAAACGCAATAGGCGGCAGAGTTATGTCAG 633386 36 100.0 34 GTTATGTCAG .................................... GGCTTTTCCTTTGCAGCATCAATTGCTGCAACTT 633456 36 100.0 36 GCTGCAACTT .................................... GATATGAAACCAGAGGATACTTATTCATTATGTTGT 633528 36 100.0 36 ATTATGTTGT .................................... ATAAAACCTCCTATATGTTTCATTTCTTCTTTAACT 633600 36 100.0 33 TTCTTTAACT .................................... CACACATAGTAACATAAGTTGTAACGGCAACAT 633669 36 100.0 35 ACGGCAACAT .................................... TCAAAGAATCCCAGAAGGGTGCACCAACTATCTGT 633740 36 100.0 36 AACTATCTGT .................................... ATGAATCATTGTATTGTAGTCCTGATAGCAGATTCT 633812 36 100.0 35 AGCAGATTCT .................................... TTAAAATACTCAGTTGTGGTTGTCCTGCTCTTTAT 633883 36 97.2 TGCTCTTTAT ...................................G TTTCTAAAA ========== ====== ====== ====== ========== ==================================== 27 36 35 GTAGGAAACAAGACCTCATTTAAAAGGGATTGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.20,-3.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [409,245] Score: 0/0.18 # # Final direction: F [0.68,0.37 Confidence: LOW] >NC_011297 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 178426 30 100.0 32 NNNNNNNNNN AA.......T.T.....G....TA.T...A CAAATTTTGTAGCGTTTATGTAGTGTTAACGG 178488 30 100.0 38 NNNNNNNNNN .............................. CTGTGAGGTGAAAAGATGATAAATACAAAGCTTTTTAA 178556 30 100.0 36 NNNNNNNNNN .............................. TTTGTCATTGCTATCCCTCCTTTCGATGAAATAATC 178622 30 100.0 37 NNNNNNNNNN .............................. TATAAAATGAAATAATCAAGAATAGTTTCTGTTTCTT 178689 30 100.0 38 NNNNNNNNNN .............................. ATGTTGTCTATTTTTTGCTCTAGCTCGTCCAGCTTCCC 178757 30 100.0 38 NNNNNNNNNN .............................. CAAAGTGAAACAGAGAAATATAAAGCTGAAAAAGAAGC 178825 30 100.0 37 NNNNNNNNNN .............................. TCCTCTACACCTCTCTCCCCTACAAGAATGTCTGGAA 178892 30 100.0 37 NNNNNNNNNN .............................. TTGTATCGCCTCCCATCCTTAGTTTTGCTCAGTTTTA 178959 30 100.0 36 NNNNNNNNNN .............................. CCCCATCCTCTTCTACATCCACAACAAGTTTGCCAA 179025 30 100.0 37 NNNNNNNNNN .............................. AACATTAGCATTAATAAAATCTTAGCCACTTGGCCCC 179092 30 100.0 36 NNNNNNNNNN .............................. CTTCGAAGGTTTGTTGCAAAAAACTGAAGGAAGCTG 179158 30 100.0 36 NNNNNNNNNN .............................. AGCTAAAATTTGAAGAAATAGTTGGAGAATTAATTA 179224 30 100.0 37 NNNNNNNNNN .............................. GAATTCACCATTCTATTCACTGTTTTTCTCTACCTCC 179291 30 100.0 38 NNNNNNNNNN .............................. ATTGGAGGTAGAGTTTGAAGTAAGTAGAGACAAGGTGA 179359 30 100.0 35 NNNNNNNNNN .............................. ACTGATCCAATTCTCTCTCTCTTCTTACTATCATC 179424 30 100.0 36 NNNNNNNNNN .............................. TTGCGTCTGAGACAATTGGTAAAACATTCTGAGCAA 179490 30 100.0 37 NNNNNNNNNN .............................. GGTACAGTTAGGAATGAATATGCAAGGCACTTTTAAC 179557 30 100.0 36 NNNNNNNNNN .............................. ATTCTTCTTCCGTTATCTGCTCGAATATTTTTTGTA 179623 30 100.0 38 NNNNNNNNNN .............................. GGATGGATGCAGGTAAATTTCTAATTGTAGGCTTTAAA 179691 30 100.0 36 NNNNNNNNNN .............................. TCCGTGTGTACAAAAGATTGTGTAGCCTATTCTTTT 179757 30 100.0 36 NNNNNNNNNN .............................. TTTTGGAGAACCAAAAAGAGCTAAAACATATGATTG 179823 30 100.0 36 NNNNNNNNNN .............................. CTTCTATAAGTTCTTTAATTGCTTCCTTAATCTCTT 179889 30 100.0 36 NNNNNNNNNN .............................. TTGCGTCTGAGACAATTGGTAAAACATTCTGAGCAA 179955 30 100.0 38 NNNNNNNNNN .............................. ACCAAAAAGATGCAAAAAGCAAAAAAATGGCATGGAGC 180023 30 100.0 45 NNNNNNNNNN .............................. AGTTTTTCGATACGATGTCTATGCCTTCAATATCAAGCTTAAACA 180098 30 100.0 36 NNNNNNNNNN .............................. TTTTCCACTGACCAAACATTATATGTTAGTGGCATA 180164 30 100.0 37 NNNNNNNNNN .............................. CTGGTAGGACGTTAAGACTATATGAAAATCTCTTAAG 180231 30 100.0 37 NNNNNNNNNN .............................. GTTTGTGGCGGATAATGACCAAATTTCCATATAATTT 180298 30 100.0 37 NNNNNNNNNN .............................. TGCAATACAGCTTGCGAAATTAGAAGCAATTGCAAAG 180365 30 100.0 38 NNNNNNNNNN .............................. AGCCCTCTCCATTCTCTATCCCATTCTCCAAAATCCAA 180433 30 100.0 36 NNNNNNNNNN .............................. TCTCTCAGGCTGGTGGAAAAATCACAAGGAATTATC 180499 30 100.0 38 NNNNNNNNNN .............................. ACCTAATAGCAAACGAATATTTTGACACGCCAAGCGCT 180567 30 100.0 37 NNNNNNNNNN .............................. GACACTCCCAACTTTTTCCGAGTCTCAGACCTAAGAG 180634 30 100.0 37 NNNNNNNNNN .............................. GAGCGTGCGGTCTTAAAGTCGTCGTATATTCTCTGCA 180701 30 100.0 36 NNNNNNNNNN .............................. CAATACAGAAAAAGATAAACTTCAGGAGGGTAGTAA 180767 30 100.0 36 NNNNNNNNNN .............................. CGTCTTGCCTGTTGCTGCGCAATTAGGAGTATCTTT 180833 30 100.0 37 NNNNNNNNNN .............................. TTTCACACTTGGTTCTGGTGCAAGAGCGCTTTACCCA 180900 30 100.0 37 NNNNNNNNNN .............................. GCAGCAGAGGCAACCGCAATAATGATAGACATCGTGA 180967 30 100.0 37 NNNNNNNNNN .............................. GAATCTTTCTTAAGCATCTCCTCAAGGCAAATAGAGT 181034 30 100.0 37 NNNNNNNNNN .............................. AGTTTGAAGGAAGCTTCATCTTGTAGCCTTTTTATCT 181101 30 100.0 37 NNNNNNNNNN .............................. GTTTTTTAATCGCTTTTTAGCTTTCAGGTTTTTGCTT 181168 30 100.0 35 NNNNNNNNNN .............................. ATATTTCTATAGAAGCCCATGGATATCGCACCTCC 181233 30 100.0 36 NNNNNNNNNN .............................. GTTTTTCTAGGAGTTCTACAACATCGTTTGCAAACT 181299 30 100.0 37 NNNNNNNNNN .............................. CAGGCTCGATACTTACCCATGTTTTTATGCCTCTCTT 181366 30 100.0 36 NNNNNNNNNN .............................. TTTAGCTGGCAATAATCTAAACAATTTTTAAAATCT 181432 30 100.0 37 NNNNNNNNNN .............................. TTATCTCCCTCGCCACTGAGAATGATATCTTCCCCTC 181499 30 100.0 37 NNNNNNNNNN .............................. CTGGTAGGACGTTAAGACTATATGAAAATCTCTTAAG 181566 30 100.0 37 NNNNNNNNNN .............................. GTTTGTGGCGGATAATGACCAAATTTCCATATAATTT 181633 30 100.0 37 NNNNNNNNNN .............................. TGCAATACAGCTTGCGAAATTAGAAGCAATTGCAAAG 181700 30 100.0 38 NNNNNNNNNN .............................. ATTTTCTCTTTTCCAAAGCACGCTTTTCCAATTCACGC 181768 30 100.0 36 NNNNNNNNNN .............................. ATGGAAAAAAATGCAGAAGCCTCTCAAACATCTCAA 181834 30 100.0 36 NNNNNNNNNN .............................. GAGGTAAATATGTATACATTCCATATTTTGCTCAAG 181900 30 100.0 36 NNNNNNNNNN .............................. TCCTACAACGCTGTCTGCGTCCCATTCCAAAATCTC 181966 30 100.0 36 NNNNNNNNNN .............................. CACCACTCTATCAGTAGCTCCTTCTTGTTCTGTGGA 182032 30 100.0 36 NNNNNNNNNN .............................. TCCTTATTTATTATTGTATTCTTTCTTTTTATAACT 182098 30 100.0 37 NNNNNNNNNN .............................. ATAACATAAAGTGAAACTGAGCGAGACATCCCTGAAC 182165 30 100.0 35 NNNNNNNNNN .............................. AGGAGTGGGAAGAGATAGAAGATGAGTACAATATA 182230 30 100.0 37 NNNNNNNNNN .............................. TAGTAGAAAAGAAAGAATAAAAAGAAAGAATAAATAA 182297 30 100.0 36 NNNNNNNNNN .............................. CTTGCTGGAAGTGTAATGAGTTTCCCCTTAAAAACT 182363 30 100.0 37 NNNNNNNNNN .............................. AGGTTCCCATTCCTTTGTCTTAGTTTCGTCTACAAAG 182430 30 100.0 36 NNNNNNNNNN .............................. AAGGAAACGACGTAATAGAGCTAAGAAAATTTGAGA 182496 30 100.0 36 NNNNNNNNNN .............................. AAGAATGGATGTAAGAAATTTGTTTTGGAGTTGCTT 182562 30 100.0 36 NNNNNNNNNN .............................. AACTTACAGGAGCAAAGGGTTATAGAGGAGATGAAG 182628 30 100.0 36 NNNNNNNNNN .............................. AAGGAAACGACGTAATAGAGCTAAGAAAATTTGAGA 182694 30 100.0 36 NNNNNNNNNN .............................. AAGAATGGATGTAAGAAATTTGTTTTGGAGTTGCTT 182760 30 100.0 36 NNNNNNNNNN .............................. AACTTACAGGAGCAAAGGGTTATAGAGGAGATGAAG 182826 30 100.0 40 NNNNNNNNNN .............................. TCTCTTTCCAAGCTTCAAAAGTAATGAAATCTTTAAGATA 182896 30 100.0 1 NNNNNNNNNN .............................G NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 68 30 36 GTTTGTAGCGTGCCTATAAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.50,-0.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [78.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [344,185] Score: 0/0.18 # # Final direction: F [5.14,0.41 Confidence: HIGH] >NC_011297 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 46314 30 100.0 36 GTGTTAACGA .............................. AGTGATAGTGGAAAAGTACAAAGTGGATCTTTGTTC 46380 30 100.0 35 ATCTTTGTTC .............................. AGCTTTTCAAAAATCTGATATGCTCTTGTCCTAGA 46445 30 100.0 36 TTGTCCTAGA .............................. AATGTAAACATAAGTGATATATATGTAACAGTAATT 46511 30 100.0 36 AACAGTAATT .............................. TTAGTTGCGAAGTTCATTCTTAAAAAAGTTAAACCT 46577 30 100.0 39 AGTTAAACCT .............................. GGTACAGTTAGGAATGAATATGCAAGGCACTTTTAACTC 46646 30 100.0 37 CTTTTAACTC .............................. AGCTCTCCCAAGATGGCTAATAAAGGGGGTTAGAAAA 46713 30 100.0 36 GGTTAGAAAA .............................. AAATTTACAGGAATAAGAAGCAAGATTTTTACTTTT 46779 30 100.0 36 TTTTACTTTT .............................. TGGAAACTTTTTTTAGCCCCGTATCCTATGAATTGC 46845 30 100.0 36 TATGAATTGC .............................. GTGTAATACCAAAAAGAGTCTAATAAATCATTTGGC 46911 30 100.0 36 ATCATTTGGC .............................. TATAATTTGTGAATAAACTACAAATGACCAATCGTT 46977 30 100.0 36 ACCAATCGTT .............................. CTCCCTGATTTTATGTACGAAGCTGACGTTATTTTT 47043 30 100.0 36 CGTTATTTTT .............................. GGTGCAAAACCTCCCGTATCAACCAAAAAAATTGCG 47109 30 100.0 37 AAAAATTGCG .............................. AGGAGGTGATATAGAGGTGAGGATAAGAAAGATCACA 47176 30 100.0 37 AAAGATCACA .............................. ATATCTCTCTTATGCGGGGAAGAGCGACACCACGTAG 47243 30 100.0 38 CACCACGTAG .............................. AAGCCCCCCAGCTTTCCAAAGATGAGTAAGCCTAGAAG 47311 30 100.0 38 AGCCTAGAAG .............................. TTGTCCTCTCACCTCCCTATCACATAACAAGTTAACTT 47379 30 100.0 37 AAGTTAACTT .............................. TATATCGTTTCAAAATCAATCCCAACGTTGCAATTCC 47446 30 100.0 37 TTGCAATTCC .............................. GGAGAAGCCTATTCAGAAGCCTGAGATGATCCGCATA 47513 30 100.0 38 GATCCGCATA .............................. CTTTTTCTACCGCCCTTATTCTTTTCCTTATTTTTCCT 47581 30 100.0 37 TATTTTTCCT .............................. ATTTGACTGATGAGGAATGGGAGAAGGCGAGAAGGCA 47648 30 100.0 36 CGAGAAGGCA .............................. TTTTACCCTTCTCCTTTCATTTTCTATTTTTGTAAT 47714 30 100.0 37 TTTTTGTAAT .............................. AAAAATAAAAAAAGTAGGTGAAAAAGAATGTTATATC 47781 30 100.0 36 ATGTTATATC .............................. GGTGCAAAACCTCCCGTATCAACCAAAAAAATTGCG 47847 30 100.0 36 AAAAATTGCG .............................. GTCTCTTCTTTTTAGGTGTAGCTTTTTGTAACCCTT 47913 30 100.0 38 TGTAACCCTT .............................. AGGTTGGACATGCGTTCCCAATCTGCGAAGAATACAAA 47981 30 100.0 36 AGAATACAAA .............................. GAGGTAGAGCTTGCAGTTCCTTTTGCGCCGTTCCTT 48047 30 100.0 36 GCCGTTCCTT .............................. AAGCTTTGGCAAAAGATAAAAATAGAAGTAGCACTG 48113 30 100.0 37 AGTAGCACTG .............................. TTGCTTTTCGTAGTGTAAGGTCAATTGTGCCGTAGGT 48180 30 100.0 36 TGCCGTAGGT .............................. AGTGGTGTGGGAAGTTCTAAACTAAACCAGTGATAA 48246 30 100.0 36 CCAGTGATAA .............................. AGAGATAAATCTTTCTGAACGATACATTGCGAGGAG 48312 30 100.0 36 TTGCGAGGAG .............................. CGGAGTGTTAGGGTCAAAATTGGAGTGTTTTTCCAG 48378 30 100.0 36 GTTTTTCCAG .............................. GATGGACTGGTAGAGAATATACATATTACGAAAGGG 48444 30 100.0 36 TACGAAAGGG .............................. TTGCGCTTCTAAGAGTTTTCATAGGGGGGAGGTAGA 48510 30 100.0 36 GGGAGGTAGA .............................. TGGGACGGCTTGCGCCGTCCCAAGTTAAAACTCACA 48576 30 100.0 41 AAAACTCACA .............................. AATAAAAAAAGGAGGAATGTAAAAAATGGCTGAACAAAAAC 48647 30 100.0 36 GAACAAAAAC .............................. GGAAGTTCTCTCGATATGCCTTAAATTCATTCACAA 48713 30 100.0 36 TCATTCACAA .............................. TCAAGATCTTGCCAGTGTATGCAGAACTGAATTCAA 48779 30 100.0 37 CTGAATTCAA .............................. AGCTTCTCTAATAGCTCTATGATCTCTGGATAGACTA 48846 30 100.0 36 GGATAGACTA .............................. CAGTAGGATTTTGGAGGATAGACAGCACATATGGGA 48912 30 100.0 38 ACATATGGGA .............................. CGTAGAACAGGTGAAGGAGTGGAAAAGAAGTTTAGAGC 48980 30 100.0 37 AGTTTAGAGC .............................. TCTTTGCTCCTGGTTTACACCACTCAGGAGCAAAATC 49047 30 100.0 36 GAGCAAAATC .............................. TGTTCTGTACGCTCTTTATGTAGATACCAGCCTGTT 49113 30 100.0 38 CCAGCCTGTT .............................. TGCGCTCTTCGTTTGCTTTCGAGAGCGTTCTGCCTACT 49181 30 100.0 36 TCTGCCTACT .............................. GAGGAACCGCAGAAAGACAAAACGTACGTTATAGGC 49247 30 100.0 36 CGTTATAGGC .............................. GACATCTTTTTATGAAACCTAAACAAATTCTTATTT 49313 30 100.0 36 ATTCTTATTT .............................. CTACTTATCCAGACCCTGAGAAAAAAGAAATTTTCA 49379 30 100.0 38 GAAATTTTCA .............................. TTTGCCCGACAATACTCTATCATTTCTTTTAATTCTTT 49447 30 100.0 37 TTAATTCTTT .............................. AAAACTTGAAAAATTTTCTTAAAAATATGGCTAAAGC 49514 30 100.0 35 TGGCTAAAGC .............................. CCATTGTGCCAATAGGAGCTTCAGGTCTTTCGTCC 49579 30 100.0 36 TCTTTCGTCC .............................. ATTTTGGCAGTTAAAACATCAAGCTTTTGGAGAAGT 49645 30 100.0 36 TTGGAGAAGT .............................. TATGATTTGAGAATATGCAAGGTAAGACCAATCGTT 49711 30 100.0 36 ACCAATCGTT .............................. TAAGCCTTTGTGCTTCTTCATAAGGAAATCCTGCTA 49777 30 100.0 36 AATCCTGCTA .............................. CTACGTTTGCAAGTAGCGGTATGCTATTTAATAGTC 49843 30 100.0 36 TTTAATAGTC .............................. ACCTCAACCCTACCATAAATATCAACCTCATCTCCC 49909 30 100.0 36 CTCATCTCCC .............................. TTGCATACGGCGCCAAGAAGGAGAACCTAAACAAAA 49975 30 100.0 36 CTAAACAAAA .............................. CAAGGCATATAGGGAAGGGATTACGGATGTCTGGGG 50041 30 100.0 37 ATGTCTGGGG .............................. TTGAATGGGACTTGGGTATCGAGCAAATAAGACATAA 50108 30 100.0 36 TAAGACATAA .............................. AAGAAAAAGAGGGGAAGGAGAGCCCAAGGAGAAAAC 50174 30 100.0 36 AGGAGAAAAC .............................. ATAATGAAATCTTTAAGCTTTTCTTTTGTTCTCCTT 50240 30 100.0 TGTTCTCCTT .............................. GGATAACCAAGCACATCATCGGCAAATTTAGGATCT ========== ====== ====== ====== ========== ============================== 60 30 36 GTTTGTAGCGTGCCTATAAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.50,-0.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [414,144] Score: 0.18/0.18 # # Final direction: F [5.32,0 Confidence: HIGH] >NC_011375 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 827277 37 100.0 29 TAGTCTACGA ..................................... AGCTGCATCGCTGTAGTATTTACCAATAT 827343 37 97.3 30 TTACCAATAT A.................................... ACTGGGAAATTGATAAAATCGGCAATGCCC 827410 37 100.0 29 GGCAATGCCC ..................................... CAAGTTGTTTAATCGAAGAATTTCCCGTT 827476 37 94.6 ATTTCCCGTT ..........T.........................T GTGCCTGTG ========== ====== ====== ====== ========== ===================================== 4 37 29 GGTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:59.46%AT] # Reference repeat match suggestion: F [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 97% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-2.70,-0.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [103,441] Score: 0.18/0.18 # # Final direction: F [1.55,0.18 Confidence: HIGH] >NC_011415 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3114959 29 100.0 32 NNNNNNNNNN G..AG.TCTA....A..G........TT. TAAGTGATATCCATCATCGCATCCAGTGCGCC 3115020 29 100.0 32 NNNNNNNNNN ............................. ACGCGCGTACCGGATCGCGGACAACAAATTGC 3115081 29 100.0 32 NNNNNNNNNN ............................. CTGAAACCAGTTGGCTCGTTGTTCTTCTTTGG 3115142 29 100.0 32 NNNNNNNNNN ............................. GCTGGTTTTGAATCGTCCCGCGCTCGAGACGC 3115203 29 100.0 32 NNNNNNNNNN ............................. GGCAACATAACGAACAAAATCAACGTCAACCT 3115264 29 100.0 32 NNNNNNNNNN ............................. TTGCTGAAAAAGAAGGCTCCGGCGTTATCAGT 3115325 29 100.0 32 NNNNNNNNNN ............................. TAGTTAACTTTTAGACAGAATATCCGTGTACC 3115386 29 100.0 32 NNNNNNNNNN ............................. GGTTTTACAAGCTTAAATGATTTTAAATTTTG 3115447 29 100.0 32 NNNNNNNNNN ............................. AACTGGATTCTGCTCTAATTATTACATCATCG 3115508 29 100.0 32 NNNNNNNNNN ............................. GGAAACCGCCCCGGCGGTGGTTAGCTGTTTGC 3115569 29 100.0 32 NNNNNNNNNN ............................. TTTGCTACCCGCTCAAAACCGCCGATTCGCGT 3115630 29 100.0 32 NNNNNNNNNN ............................. TCGGCCAGCGTCCAGGCTGGCACCCGATATTC 3115691 29 100.0 32 NNNNNNNNNN ............................. CTGCCGACTGACCGCCGACGCTTTCGCGTTAA 3115752 29 100.0 32 NNNNNNNNNN ............................. CGTTTTTGCCGGGTTTATTTTAAAACCGGAGC 3115813 29 100.0 32 NNNNNNNNNN ............................. GGAATATCGTTGCGCTAAAAGAGATTCTGGGC 3115874 29 100.0 32 NNNNNNNNNN ............................. CCTGGTGTTGTCTGTTTCGTGACGCTCGGTAA 3115935 29 100.0 32 NNNNNNNNNN ............................. CTATAATTTGTTTTTGCACCACTGTACCTCGT 3115996 29 100.0 32 NNNNNNNNNN ............................. TCTTCGGGCGCGCGTTTTCGCAGACCAGCGAT 3116057 29 100.0 32 NNNNNNNNNN ............................. GTTACGCTGCCTGAATATCGCAATTCCCCTGA 3116118 29 100.0 32 NNNNNNNNNN ............................. TGCATATCAGATGGGCACTGCTGATTGGAGAA 3116179 29 100.0 32 NNNNNNNNNN ............................. ATTAAATTTTGCAGGTAGCTGTTATCCGTGTC 3116240 29 100.0 32 NNNNNNNNNN ............................. CGATTCCTCGTAGCTGCCACTCGACTGAAAGC 3116301 29 100.0 32 NNNNNNNNNN ............................. GTCGCCTGTTCAACTTTAAACGGCTCAAACCA 3116362 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 24 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [22,98] Score: 0.18/0.18 # # Final direction: R [0,2.1 Confidence: HIGH] >NC_011415 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3142154 29 100.0 32 AATTGAGAGG ............................. TAATCACGTTTTAGCGCGCCCTCGTCCGGTTT 3142215 29 100.0 32 CGTCCGGTTT ............................. ATCACGATAACGCTGCTGTGATTCGTCCCCGT 3142276 29 100.0 32 TCGTCCCCGT ............................. AAGACGACGTGATCCGCAAAGTCGAAGGCACG 3142337 29 100.0 32 CGAAGGCACG ............................. TGTTTTTCTGCCGGTTTAACACGGTGCGATAA 3142398 29 100.0 32 GGTGCGATAA ............................. TGTTTCTGTCCCAACTGAACAGCGCCGATAGT 3142459 29 100.0 32 CGCCGATAGT ............................. TTGTCCAGACTCCCGATTGTTTTGCCGTCCGC 3142520 29 100.0 32 TGCCGTCCGC ............................. CTGGTTTCTTTTTTTCTGCTCCGGTGAGAGTT 3142581 29 100.0 32 GGTGAGAGTT ............................. GTGTTAACTGACAAAACCGTACTGCGTTTCGT 3142642 29 100.0 32 TGCGTTTCGT ............................. GAATGATCCCAAATTTGGGTTACAGAACCAGT 3142703 29 100.0 32 CAGAACCAGT ............................. GGACTTAAAGATCGCATCACAGTACTGGAGGG 3142764 29 100.0 32 TACTGGAGGG ............................. ATGAAATGCAGGAACGTGAATTTCTCGTCCGG 3142825 29 100.0 32 TCTCGTCCGG ............................. GGGATAAATCGGCCCGCATTGGCGGGCCTTTG 3142886 29 100.0 32 CGGGCCTTTG ............................. AAAGGCAATACGGCGGGCATTCAGTTGCCAGC 3142947 29 100.0 32 AGTTGCCAGC ............................. CCGCAGCGTACGCACGAGAGTCAGTGCAGTGG 3143008 29 100.0 32 AGTGCAGTGG ............................. CCCTTGATGAGGACGGGCCGGGCGAGCTTGTT 3143069 29 100.0 32 CGAGCTTGTT ............................. GGCAATCCGTTGGATTCATTGTTTTGTTGCTC 3143130 29 100.0 32 TTTGTTGCTC ............................. AATAACTCGCGTAAATGCTCTGCGGCGCTACG 3143191 29 100.0 32 CGGCGCTACG ............................. CCTCCTGTACCACGATCGCGCCCTCATACCCC 3143252 29 100.0 32 CTCATACCCC ............................. CAAAAAACGCCGCGTTTTTTGCATTTTATCGG 3143313 29 100.0 ATTTTATCGG ............................. TGTAAACATA ========== ====== ====== ====== ========== ============================= 20 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,6] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [701,341] Score: 0.18/0.18 # # Final direction: R [0.18,1.51 Confidence: HIGH] >NC_011297 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 71082 29 100.0 37 GCAATTCGTG ............................. CTTTCATCTTCATCCCAATCAGCATCTTTCCAATCAC 71148 29 100.0 35 TTCCAATCAC ............................. GGGAGAGAAAAAATAAAAGCCTCTGTAGAAAAGGA 71212 29 100.0 36 TAGAAAAGGA ............................. TCCTTCTACTCGCAAGTCTATTGTCTTTGCAACAGC 71277 29 100.0 36 TTGCAACAGC ............................. TTCTAAGCGTGTAAACAAGGTTTTTGAAGACGCAAA 71342 29 100.0 38 AAGACGCAAA ............................. GCGCGGTTTGAGTTTTCTATAATTCCTAAAATTTCAGG 71409 29 100.0 36 AAATTTCAGG ............................. GTTAACATCCCCTTCTATATATAGAGTGTCAAAATT 71474 29 100.0 36 TGTCAAAATT ............................. CCAGTACCTGCCAACCCTGAAGCGCTTGTTGTAGCA 71539 29 100.0 37 TGTTGTAGCA ............................. GAGACTGCAGATGCTCTAAAACTTTTTGTTGCAGGTA 71605 29 100.0 37 GTTGCAGGTA ............................. GTTGTGTAATGGTACGCTTTCCAGTCTTCTCTTTCTT 71671 29 100.0 36 TCTCTTTCTT ............................. GATGATGGAAATTTTGAACATGAAGGTGTTGGAGAA 71736 29 100.0 36 TGTTGGAGAA ............................. TTCAAATAAATCTTGTCATCAAGCATAGTAAGTTTT 71801 29 100.0 37 AGTAAGTTTT ............................. TTACCATTGTAGGGGGTGGTTAAATGTTTATAAAGAT 71867 29 100.0 37 TTATAAAGAT ............................. CAGAGCTAAAGAGCTTTATTCTACCTAAAAAGAAAAA 71933 29 100.0 37 AAAAGAAAAA ............................. CTGCCTAAAAGATACTCAATTGGTACTTCTAACGCAG 71999 29 100.0 37 TCTAACGCAG ............................. TGAAAGAAAAAGAAACAAAATCAATCGTGGTTTCCAA 72065 29 100.0 37 TGGTTTCCAA ............................. ATAGCGAGTTCGATAAATACGGAACTCCTAACGTTGA 72131 29 100.0 36 CTAACGTTGA ............................. GTCCTTCTCCATAATCTCAAGAATGCTTTTGTAAAG 72196 29 100.0 38 TTTTGTAAAG ............................. ACAGTAATTCAGGAGGGATATTTTTCATTGCTTACTCG 72263 29 100.0 36 TGCTTACTCG ............................. TGCCAAAACCAAAAGACTTTACAGAAAAAGAAGAAA 72328 29 100.0 36 AAAGAAGAAA ............................. CATATACTCGTTTCCGTTATCGAGTAGAGAAATAAT 72393 29 100.0 37 GAGAAATAAT ............................. TCCAACAATTCCACAAATTTTCACTCTCACTTCATGA 72459 29 100.0 36 CACTTCATGA ............................. TGCTGCGAGAGTACAACGGCAGTTAATGCTTTCTGC 72524 29 100.0 37 TGCTTTCTGC ............................. GGTTATATGGCAACATAAAAACATCCCCGCCCTCTAC 72590 29 100.0 37 CGCCCTCTAC ............................. TTATGAGAAGACAAGAACAAAAAACAAATATCACGAC 72656 29 100.0 35 ATATCACGAC ............................. TGAAATGTGAAATAAACTTTCTTTTCTTGATCATT 72720 29 100.0 36 CTTGATCATT ............................. TGCTTTTGTTAGACCTGGTGCGGTTATCAAAATGTC 72785 29 100.0 38 TCAAAATGTC ............................. ACAGAGGAACTACCACAATTCCCGATTAGGCAAAAAGA 72852 29 100.0 36 GGCAAAAAGA ............................. GATAACAAGCAACTTCCTTAAGGTATGTTTGCAGAA 72917 29 100.0 37 GTTTGCAGAA ............................. AGGCTTGAGAGTGGAGAGATAGTGGCGAGGACAGTAG 72983 29 100.0 38 AGGACAGTAG ............................. TCTCAGAGGTGGTTCTTTCCACCCTCCACATTACGCAC 73050 29 100.0 36 CATTACGCAC ............................. TTCCGATTTTAAGGTTGCCCTTATTCCCTTAGTACA 73115 29 100.0 CCTTAGTACA ............................. CCAGCGTTAA ========== ====== ====== ====== ========== ============================= 32 29 36 GTTTAAATCCCACATAGTTCAGATCAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.52%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.40] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [60,218] Score: 0.18/0.18 # # Final direction: R [0,0.45 Confidence: MEDIUM] >NC_011365 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1814792 32 100.0 35 TATGCGCGCC ................................ AAGCGCGACTCGCCAATCGGTGAAGCGCGCTGCGG 1814859 32 100.0 34 CGCGCTGCGG ................................ CGGATGGCATCGGGGTGAAATGCGCGAACAGGTC 1814925 32 100.0 33 CGAACAGGTC ................................ GTCAGCATGCTCATAAAATCCGCCAGATTGGGC 1814990 32 100.0 34 CAGATTGGGC ................................ TCGCATCTGCTGACCTGATCAAGCGCAACAAGGT 1815056 32 100.0 34 GCAACAAGGT ................................ CGGTCAGGACGATGGGCAGATCCGCAGACTGTCC 1815122 32 100.0 34 CAGACTGTCC ................................ CGATATGGCATCGGAATGGGGCGTCAGCATTCTG 1815188 32 100.0 34 CAGCATTCTG ................................ GCCAGCCGCCCGTCCGGACTGGGAGCGGCTGGAT 1815254 32 100.0 34 GCGGCTGGAT ................................ TACGAGACCGTGACGGCGGCGGTGGCTGACTTTG 1815320 32 100.0 34 GCTGACTTTG ................................ ATCCCGGGCGAGCCGCTGCCCGTCATGGACAAGA 1815386 32 100.0 34 ATGGACAAGA ................................ CCCGGCCAGCGCAAAATATCCCGCGCCGTCCACG 1815452 32 100.0 35 GCCGTCCACG ................................ CGATCCTCCCGTGGCACCGGGGGTTCCCCCAAGGA 1815519 32 100.0 34 CCCCCAAGGA ................................ GCCCCCCAAAGGTTGGGTTGATCGTTCGGGAAAG 1815585 32 100.0 35 TTCGGGAAAG ................................ CCGATTCCGGTCCCGAGTTGAATGCGCGCGAACTC 1815652 32 100.0 34 GCGCGAACTC ................................ TGTTGCAGCAGGCCCCACGCAAGGGATGGCCGAT 1815718 32 100.0 35 GATGGCCGAT ................................ TCCCGGGCGAGCCGCTGCCCATCATGGACAAGAAG 1815785 32 100.0 34 GGACAAGAAG ................................ ACGGAATTTTACGCTCCGACATCATCTAACCCGC 1815851 32 100.0 34 TCTAACCCGC ................................ AGGAGGGTGATATCGAACGAATATCCGATCGGAA 1815917 32 100.0 35 CCGATCGGAA ................................ ATCAACACGCCGGCGCCGATCGAGATCATCTCCCC 1815984 32 100.0 34 TCATCTCCCC ................................ CAGCGGTTCCGTTCGGAATTCGAGGAATTCCAGC 1816050 32 100.0 36 GAATTCCAGC ................................ TTTACCGAAACCGTTATCTCGGCCGGAGCGCCGAAC 1816118 32 100.0 33 AGCGCCGAAC ................................ ATGCGCGAGGCTGCCGCTTTCATCCGCGCTAAC 1816183 32 100.0 34 CCGCGCTAAC ................................ TGCGCACGCTGGCCATCGGCGCGTCCTGGTATAA 1816249 32 100.0 34 CCTGGTATAA ................................ TGGGTGACGTAGATATACGACCCGTCGCTAACCT 1816315 32 100.0 34 TCGCTAACCT ................................ GTGTAGATCATCCCTGGCGTAAGAACGGTGAAGC 1816381 32 100.0 33 ACGGTGAAGC ................................ AGGGGCGGCACAGCGCCACCCCTAACGCCTCTG 1816446 32 100.0 35 AACGCCTCTG ................................ GTATGGGGCGGGCGCCCACGAACCGGACGACGGAA 1816513 32 100.0 34 GACGACGGAA ................................ CCTGATGGTTGATGGGGCCGACCGTTGTCATGTT 1816579 32 100.0 34 TTGTCATGTT ................................ TGGAGCGCCGCCATTTCGCCATGTCGGTCCATGG 1816645 32 100.0 33 CGGTCCATGG ................................ GGGATGTTGTCGAGGGTGAGGAATCGCGGGCAT 1816710 32 100.0 34 TCGCGGGCAT ................................ TTTGGAGCGGTCAGGTTGGCCGACACCAACCAAA 1816776 32 100.0 34 ACCAACCAAA ................................ GCGATCACGTTGCGGATCGACCGTTCGGAACGAC 1816842 32 100.0 35 TCGGAACGAC ................................ CTCGGGATGTTGATTGCCCGGTCAACATTTGCAGG 1816909 32 100.0 34 CATTTGCAGG ................................ CATGGGGATCAGGCCGAGTAAAACAGAACGTCAA 1816975 32 100.0 34 AGAACGTCAA ................................ GCCGCAAGCGCGAAAACATGGACCAGATCAAGGC 1817041 32 100.0 34 AGATCAAGGC ................................ CCGAGGTCCAGCAGCGCCTGCTCGGCGTCGTCCA 1817107 32 100.0 34 GCGTCGTCCA ................................ CGGTAACTCTCGGGATAGCGGTCCTGAATGGTGG 1817173 32 100.0 34 TGAATGGTGG ................................ CGCCTTTGGATGCGAACTCGTCGGCGATCAGGCG 1817239 32 100.0 35 CGATCAGGCG ................................ CGTCAGGAAGTCGGTGCGCCCGCTCTCGATCGGGG 1817306 32 100.0 34 TCGATCGGGG ................................ ACGGCCAAGCGGATCGGTTGGAGACGTGGCGCGC 1817372 32 100.0 35 CGTGGCGCGC ................................ CGGTTCGTCCAGCAGCGCACCATGCAGAGCGGGAT 1817439 32 100.0 35 AGAGCGGGAT ................................ ATCTCATCCGCGACCCGCTCCAGCCCTTCCGCCAG 1817506 32 100.0 33 CTTCCGCCAG ................................ AGGCGCAGGTCAGCCCGGTAGCCGGTGATGAGG 1817571 32 100.0 33 GGTGATGAGG ................................ TCGGGCGACGGCGCGCGGGCCGGGTTCTCGGGC 1817636 32 100.0 34 GTTCTCGGGC ................................ CGCACTGGTCGAGGCTTACGGCAAGCTCTCCAAG 1817702 32 100.0 35 GCTCTCCAAG ................................ AGGAACAATCACTGCCCGCAATCCAGACAATTCCG 1817769 32 100.0 33 GACAATTCCG ................................ GTCGATACCCAGCCACTGCGGCATCTCGAAATT 1817834 32 100.0 35 TCTCGAAATT ................................ CAGAGCGCGGGCATTCTTCGCGAGAGGGGTCTGGT 1817901 32 100.0 34 GGGGTCTGGT ................................ GGTCGGCTGTCCGGAAACGATCTGTCCAATCCCT 1817967 32 100.0 TCCAATCCCT ................................ TTCGACCAGA ========== ====== ====== ====== ========== ================================ 49 32 34 GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [5,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.90,-5.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [184,81] Score: 0.18/0.18 # # Final direction: F [4.95,0.74 Confidence: HIGH] >NC_011365 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1819355 32 100.0 33 ACACGATAAC ................................ TTAGTTTCATGAGTTTGGTGAGTTATACGAACT 1819420 32 100.0 35 TATACGAACT ................................ CGTGATGCGTGGGGCACGCGCGAACGACTTGGCCT 1819487 32 100.0 34 GACTTGGCCT ................................ AGCCTTCGTCAGCCAGCGGTCACGTGGAGGCGGT 1819553 32 100.0 34 TGGAGGCGGT ................................ CGTCTCAACGTTGGGAAGCTCTTTTACCGCCATG 1819619 32 100.0 34 TACCGCCATG ................................ TCTCATGCGACGTCTCCAAACGGCAGGGTCTGCT 1819685 32 100.0 33 AGGGTCTGCT ................................ ATCGCGCATGGACCGCACCACGGGATTCCGGTC 1819750 32 100.0 34 GATTCCGGTC ................................ TGGATCTCACGGCCCCGAAAGCACCCCTGAACTG 1819816 32 100.0 34 CCCTGAACTG ................................ GGAATGTGAGGGATCGCGATGCGGAATGATTGGT 1819882 32 100.0 35 AATGATTGGT ................................ CGTCACTGTGACGGGCGCTGACACGTTCACGTATC 1819949 32 100.0 34 TTCACGTATC ................................ ACGAACAGGATGACGCCCAGGCCGCCGATGCCGA 1820015 32 96.9 CCGATGCCGA .........C...................... GCCGACCGCG ========== ====== ====== ====== ========== ================================ 11 32 34 GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [5,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.90,-5.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [43.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [955,165] Score: 0.18/0.18 # # Final direction: F [5.36,0.74 Confidence: HIGH] >NC_011365 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 388303 36 100.0 30 CCTGCAAGGT .................................... TCAGCCGGCTGGGCATTGCCCTACGAGAGG 388369 36 100.0 30 CTACGAGAGG .................................... AGGGGAGCGCGTCACCTTCGACAAGGGCCT 388435 36 100.0 30 ACAAGGGCCT .................................... CCTCGTTGCTCGCGCGCGGGTGCAGGGCTG 388501 36 100.0 30 TGCAGGGCTG .................................... TCCGCACGTTCACGCGTACCAGCATCGCGG 388567 36 100.0 AGCATCGCGG .................................... TGCTCTTAGC ========== ====== ====== ====== ========== ==================================== 5 36 30 AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [11,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [58,134] Score: 0.18/0.18 # # Final direction: F [0.74,0.18 Confidence: MEDIUM] >NC_011365 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 460903 29 100.0 32 ATTGCAGCGC ............................. ATTCGATACGGTAATGTCGGCCATGTTTTATC 460964 29 100.0 32 ATGTTTTATC ............................. CGCTCGACCAGATCGCGCACACCCTCGGCAAC 461025 29 100.0 32 CCTCGGCAAC ............................. GTGCTGGAGGTGATGGCGGCCAATCGCCGCAC 461086 29 100.0 32 ATCGCCGCAC ............................. CATTGACCCGGCACCCTCCCCATGTGACGTTT 461147 29 100.0 32 TGTGACGTTT ............................. TGGCTCGGGACCATCTTAGCGGACGACATGGC 461208 29 100.0 32 ACGACATGGC ............................. GGCGTAGCCCGCAGCACCGCCCAGCCGGGGAC 461269 29 100.0 32 AGCCGGGGAC ............................. CTTAACTGGATCACGATCGCGCTGATCCTCTA 461330 29 100.0 32 TGATCCTCTA ............................. CCCGACGAAGTGATGGCCTGACTGTCTACGGC 461391 29 100.0 32 TGTCTACGGC ............................. CCGACCCCCATTGAATTGGGTGCGAACAACTA 461452 29 100.0 32 CGAACAACTA ............................. ACGTTCTCGCGCGTGCTGTCCACGTTCCTGAC 461513 29 100.0 32 CGTTCCTGAC ............................. AGCGCGGCGTGGCGGGAATCAAGGTCGTCGGT 461574 29 100.0 32 GGTCGTCGGT ............................. ACCATCCGTTCGGCGGTGATGCCGCGAACGAT 461635 29 100.0 32 CGCGAACGAT ............................. TTGCGTCAAACGAAGCACAATATCAGGCGCAG 461696 29 100.0 32 TCAGGCGCAG ............................. CAGTTAAGGGGGTTTTTCGCAATCCCCCAATT 461757 29 100.0 32 TCCCCCAATT ............................. AACGTGGAATGGCACCAGATCGAAACGATGCT 461818 29 100.0 32 AAACGATGCT ............................. GCGAAGACCTGCGCCTGGAGCGCCTGCTTGTG 461879 29 100.0 32 CCTGCTTGTG ............................. CGTGGGGAATATCCTGACACACACATGGGCGT 461940 29 100.0 ACATGGGCGT ............................. TCTTCGTGGA ========== ====== ====== ====== ========== ============================= 18 29 32 CGGTTCATCCCCGCACGTGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [35.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1173,70] Score: 0.18/0.18 # # Final direction: F [0.55,0.27 Confidence: MEDIUM] >NC_011375 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1201585 32 96.9 35 CAGGTTCATC -............................... AAGATGACACTGGTACTGCACATGTCGATTTAAAA 1201652 32 100.0 35 CGATTTAAAA ................................ AGATCTTAAAATGGATTCTTCTTCAGATATTTTTG 1201719 32 100.0 35 GATATTTTTG ................................ GATAACAGTTGCTTTAGTCGATAAGTCGATTAGCG 1201786 32 100.0 35 TCGATTAGCG ................................ ATTATGTTTTGCCACATGAGAAAGTAAAAAATGGA 1201853 32 100.0 33 AAAAAATGGA ................................ TCCCTTATAATCGACAAAAAGCGCCGATTGATT 1201918 32 96.9 CCGATTGATT ...................C............ TGCGCCAAAT ========== ====== ====== ====== ========== ================================ 6 32 34 ATTTCAATCCACTCACCCATGAAGGGTGAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.12%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [182,149] Score: 0/0.18 # # Final direction: R [0,4.87 Confidence: HIGH] >NC_011420 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1984942 36 100.0 38 ACCAGGGGGG .................................... GAAGTCCTTAGGCTCCTGATCATAAAACCCGAAGGGGC 1985016 36 100.0 39 CCGAAGGGGC .................................... ATTCTGTTTCGGACGTCGCTGAACGCCGTCCACGCCGCC 1985091 36 100.0 40 CCACGCCGCC .................................... TGCCGGACGGTGCCGCAGAAGTCGCGGGCGCCTCGACCTT 1985167 36 100.0 39 CCTCGACCTT .................................... GACGCCGTCGCTCCACCGTTCGGTGGTGGGGCTCAGGGC 1985242 36 100.0 39 GGCTCAGGGC .................................... TCCCGCTGGTTGGCATACGGCTTGAGGCTAGCGTACAGC 1985317 36 100.0 38 AGCGTACAGC .................................... GCCAGCGTCGGCACCAGCTCGAGAGGTCGGCCGAGCCA 1985391 36 100.0 37 GGCCGAGCCA .................................... TGAAGGCCCTCGCCCAGGCCGGCCGCGATCCCGCCCG 1985464 36 100.0 40 ATCCCGCCCG .................................... GCGAGTTCAACGACGGTGCGCGCGACCTGTCCCGGACGCC 1985540 36 94.4 40 CCCGGACGCC .............C......C............... GCCGACAGGTTCTCGTCAGAGATCGGGGAGAGGGCGATGC 1985616 36 97.2 40 AGGGCGATGC .............C...................... ACCAAATGGCCATGTGCCAAGCCCGTCCAAACGCAAGCCC 1985692 36 100.0 37 ACGCAAGCCC .................................... TCCGATTCCACCGGCATGATCGGTGTCCGGGTGGCGC 1985765 36 100.0 CGGGTGGCGC .................................... GTCGGTCCGG ========== ====== ====== ====== ========== ==================================== 12 36 38 CTTCCTCGGCCCCTCGGGCCGAGGCCTCATTGAAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.90,-12.70] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [30.0-28.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [219,165] Score: 0/0.18 # # Final direction: F [0.41,0.37 Confidence: LOW] >NC_011420 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3012116 36 97.2 38 TGCTCCAAGA -................................... GTGCTCCCGAACCTGAAGCTGGGCGTCTGCCGCTACGT 3012190 36 100.0 38 GCCGCTACGT .................................... ACCGTATCTAATGTTCGAGCAAAAGTGGATCGCATCAA 3012264 36 100.0 40 ATCGCATCAA .................................... GCTGGCCAACGTCTGGCTCGGCACGACGGTGGAGAACCAG 3012340 36 100.0 39 GGAGAACCAG .................................... CGCCATCCAGATGCTGGCCCTGATCGAGACGGGCGGTGC 3012415 36 100.0 38 CGGGCGGTGC .................................... ATTGCGCTGTCCCTGCCCGGTGCGCGCTACCGCGACAG 3012489 36 100.0 40 ACCGCGACAG .................................... GCGACTGGCTGCTCGCCGAGTACGGCCAGGAGAAGGCCGA 3012565 36 100.0 38 AGAAGGCCGA .................................... GACGTCCGCTTCTTCAGCTTCGTCCCGGCGACCCGCCC 3012639 36 100.0 40 CGACCCGCCC .................................... TTGAAGTCGACTACAGTCTTCTCTTTAATCTCTTCCGTGA 3012715 36 100.0 36 TCTTCCGTGA .................................... GAAGATACATTCGGGCACGATCTGACGCCGGCAAGA 3012787 36 100.0 42 GCCGGCAAGA .................................... ATCCCGCTGGGGCCGCGGCCTTGTCAGTCGATCCCCCTCCCT 3012865 36 100.0 36 CCCCCTCCCT .................................... ATGCCTCATCGGCTGCCGAGAGTGCTGCTATAGCTA 3012937 36 100.0 37 GCTATAGCTA .................................... CACCCTACAGTCTGTAGGGCAGCATCAGACTTGCATC 3013010 36 100.0 39 GACTTGCATC .................................... TCGGTCCACTTCCGCCGGGAAGCGGGTCGCGATCTGGCG 3013085 36 100.0 40 CGATCTGGCG .................................... GCTGTACAAGCGGAATACCGAACTGCAGGACATGGTTCTG 3013161 36 100.0 40 CATGGTTCTG .................................... GCCGGAGCCGTAGCCCCAGCCCCAGCCGTGGCCGTAACCG 3013237 36 100.0 40 GCCGTAACCG .................................... TACTGTGATCGTGCTGCGGCAGCGTGGAGACGCGCACCCG 3013313 36 100.0 37 CGCGCACCCG .................................... GGGCAGATGGCTCGAACTCCCCCCACTGCTTGAAGAA 3013386 36 100.0 40 GCTTGAAGAA .................................... CGCGTTTTATGCCGCGGCGAAGGATGCCGCGATGAGCCTG 3013462 36 100.0 36 GATGAGCCTG .................................... CGAAACCTCACCCGTGCGGATGATCCGCGTCAACTC 3013534 36 100.0 39 GCGTCAACTC .................................... TCTGGCCGTGCTGGACGAGGCCCACCACCTGCCCGCGGC 3013609 36 100.0 36 TGCCCGCGGC .................................... TGTTCTTGCTGCGGCTGTTGCACCACGGGGACGCGG 3013681 36 100.0 40 GGGGACGCGG .................................... CCCAGACCCTCGAGGACCTCCAGCGGATCGAGATCAAGCT 3013757 36 100.0 39 AGATCAAGCT .................................... CGACATCTCCCGCGAGGTCGTGACGGTCGTGTCCGGCCA 3013832 36 100.0 39 TGTCCGGCCA .................................... GACATGACTGACTTGCACAAGCCCATGTCCCCCGAGGAG 3013907 36 100.0 43 CCCCGAGGAG .................................... GGGAAGAGGCCGAGCGGATGGCAGACGACATTGCAAAGGCGCT 3013986 36 100.0 42 CAAAGGCGCT .................................... TTGGAACGGCACTGGCGCGTTTTACACCGCACTTCGGCGACT 3014064 36 100.0 36 TTCGGCGACT .................................... CACGCGGGCGGGTTGACCGGACCCGCTCGACAGCCC 3014136 36 100.0 36 TCGACAGCCC .................................... CCCACATCCCCGGCCTGAGCCGGTCTCCATACATGC 3014208 36 100.0 40 CCATACATGC .................................... CTCCGTCATCTTGGCAAGCTGGTCGCCCGTGATCTGGCCG 3014284 36 100.0 39 GATCTGGCCG .................................... CGCGGTCTCAGCGGCACCGCCGTGCAGGCGCGCCGCGAA 3014359 36 100.0 36 GCGCCGCGAA .................................... CCATCCGCTGCCCCGGCGCCGTGCTCAGCGCCGTCT 3014431 36 100.0 37 AGCGCCGTCT .................................... CGGGCAGGAGGGCAACAAGACCGCCCCCGTCCTGGAA 3014504 36 100.0 41 CGTCCTGGAA .................................... CCGGACATGGCCACGCTCAACGTCGAGGCCATGCTCGATCA 3014581 36 100.0 36 TGCTCGATCA .................................... CCCTGACGCTGGTCAGTTGACGCGGGCCACGAAGAC 3014653 36 100.0 36 CCACGAAGAC .................................... CACCGCCGGCCGTGCCGTGACGCTGGCGAAGATGCT 3014725 36 97.2 37 CGAAGATGCT .................A.................. CTGCGCATACGCGGTGGCGCGGTCAGTTTGGGCGACT 3014798 36 100.0 40 TTGGGCGACT .................................... CTCCGGAACGGTGTCGCTCTACTTCTCCAGCTTCACCGAA 3014874 36 100.0 38 CTTCACCGAA .................................... ACAGGAACCGTGACGGTCAACGTCTCCGCGCTCGGTGC 3014948 36 100.0 39 CGCTCGGTGC .................................... CTCGCGCGGGCGCAAGGGGGCTTGGGAATGTCAATACCT 3015023 36 100.0 GTCAATACCT .................................... CCTCCCCTTC ========== ====== ====== ====== ========== ==================================== 40 36 38 GCTTCAATGAGGCCCCGGCATTTCTGCCGGGGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [7,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-13.30,-14.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [33.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [223,246] Score: 0/0.18 # # Final direction: R [0.27,0.78 Confidence: MEDIUM] >NC_011420 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3432278 29 100.0 32 ATCTGGACGA ............................. ATCAGACGGACAGGCTCCCAGAAGCCAACAGC 3432339 29 100.0 32 AGCCAACAGC ............................. ATGCGCGGTCATAGCACCTCCATGTAGTGCTG 3432400 29 100.0 32 TGTAGTGCTG ............................. TATTGGCACACCTCTGTCGTCGACAGCGCAGG 3432461 29 100.0 32 ACAGCGCAGG ............................. CGCGCATCAATGGGATTGATGCTGTCGCATTT 3432522 29 100.0 32 TGTCGCATTT ............................. GGGTGGAGGGCTACCGCGTAATCGCCTCTCAT 3432583 29 100.0 32 CGCCTCTCAT ............................. GGCGCGTCCGGGCCGTCGCCCGTGGTACCGGG 3432644 29 96.6 32 TGGTACCGGG C............................ CGCGGACTATGCCATCATCGAACGGGGCGGGC 3432705 29 100.0 32 CGGGGCGGGC ............................. CACAGAAGAGAGGCTGTCGTGACGATTGCTTT 3432766 29 100.0 32 CGATTGCTTT ............................. CGGTTCGGGCTGCACCCCATAACCGTCTGCCG 3432827 29 100.0 32 CCGTCTGCCG ............................. TCCACCTGCTTATCCCCGGGGGCGAACGGAGA 3432888 29 100.0 32 CGAACGGAGA ............................. AGGGCGATGGCGAGAAGCACCATCGCAGGGTT 3432949 29 100.0 TCGCAGGGTT ............................. GGTAGCCGCA ========== ====== ====== ====== ========== ============================= 12 29 32 GGGTTCATCCCTGCACATGCAGGGGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [7,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [36.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1118,52] Score: 0.18/0.18 # # Final direction: F [0.55,0.27 Confidence: MEDIUM] >NC_011420 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 3434714 30 100.0 31 CGATGACCTC .............................. TGGAGCAGCTAAGTCCGACCGCTCGGCGCCG 3434775 30 96.7 31 CTCGGCGCCG .............................G GGAAAGGGCATCCCCGACCGGACGGGCTAGA 3434836 30 100.0 31 ACGGGCTAGA .............................. GGCCGATGCCGGGATCGACGAAGACCTGATG 3434897 30 100.0 AGACCTGATG .............................. GCTGCGCGGGG ========== ====== ====== ====== ========== ============================== 4 30 31 GGGTTCATCCCTGCGGGGGCAGGGGCGACC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-12.80,-10.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [23.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [546,2354] Score: 0.18/0.18 # # Final direction: R [0.37,1.23 Confidence: MEDIUM] >NC_011420 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3435440 29 96.6 32 ATCGGCCCCA ....G........................ ATCCGGCATTTCCTCAATCAGGCCGGACACCA 3435501 29 100.0 32 CCGGACACCA ............................. ACCCTGCTCTGGCCGCGCCCGGTGCCTGTACA 3435562 29 100.0 32 TGCCTGTACA ............................. TCCTCGGGGTATCGGTCCGTCTCGTCGCAGGC 3435623 29 100.0 32 CGTCGCAGGC ............................. GCCACCCTGACCGGCGTCACCCCGCGCATCCT 3435684 29 100.0 32 CGCGCATCCT ............................. AGTTCCTTGGCGATGGCCTTCATGGCGCCGGT 3435745 29 100.0 32 TGGCGCCGGT ............................. TCCATGGTGACGCCGTAGATCCAGCTCTTCGC 3435806 29 100.0 32 AGCTCTTCGC ............................. CTCGTGGAGCGGTCGGAGGTGCTGACTGTCGG 3435867 29 100.0 32 TGACTGTCGG ............................. GCAGGACGTGTCCATGGCCGCAGCCCCGCCGT 3435928 29 96.6 32 GCCCCGCCGT C............................ AAGCTGGTGCCGGTGGGGCTTACGCCGGCCAT 3435989 29 100.0 32 CGCCGGCCAT ............................. GGTCTCGGCAGCGCGCATACCGCAGGCTTCAG 3436050 29 100.0 32 CAGGCTTCAG ............................. TGGATCTTCGACCGCGGCATCACCCAGGAGCA 3436111 29 100.0 32 CCCAGGAGCA ............................. CTGCGCGTCTCGAACTGCTTGCGCCCGGCGAA 3436172 29 100.0 32 GCCCGGCGAA ............................. GCGAGCACGTCCTCATAGGTGACCTGTCGCAG 3436233 29 100.0 32 CCTGTCGCAG ............................. GAACCACTCCCGGACCTTCGCGGCGTCAGTCA 3436294 29 100.0 32 GCGTCAGTCA ............................. CCCGAGCCCGGCCGCGCCTCACGCCCCCACCA 3436355 29 100.0 32 GCCCCCACCA ............................. TCAAACAAACCCACTGTCCCGCGGGACGACCA 3436416 29 100.0 32 GGGACGACCA ............................. ATCACGGTCATCGACCAGGATGGCCGGACCCT 3436477 29 100.0 32 GCCGGACCCT ............................. AGCCGGCGCGTTCGGCCGCGCGGGCGATGATC 3436538 29 100.0 32 GGCGATGATC ............................. TCGGCGTCGTCCGCCTCCAGCACCGCGACCTG 3436599 29 100.0 32 CCGCGACCTG ............................. CGGATCTGTTGTGCGACAGCCTCAGCGCCTGC 3436660 29 100.0 32 CAGCGCCTGC ............................. CATCGGTCGCCCTCCATGGCGTCCAGGAACGA 3436721 29 100.0 32 CCAGGAACGA ............................. GATCTGGCCCGGACCGAACACGACCTCCGGCG 3436782 29 100.0 32 ACCTCCGGCG ............................. CCTTAGCGGCGCACGGCATGAAAAACACCCGC 3436843 29 96.6 AAACACCCGC C............................ TGTGGCGGCA ========== ====== ====== ====== ========== ============================= 24 29 32 GGGTTCATCCCTGCGGGGGCAGGGGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-12.00,-10.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [18.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1272,409] Score: 0.18/0.18 # # Final direction: R [0.55,0.64 Confidence: LOW] >NC_011420 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3607001 36 100.0 39 AGGGCTGCTT .................................... GAGCACCTCCTCCATCTCGTCACGTCGCCAACGGTCGAT 3607076 36 100.0 39 AACGGTCGAT .................................... GCCACCTCGGCAAGCGCCACCAGCGTTTCCGCATCCAGT 3607151 36 100.0 41 CGCATCCAGT .................................... GCGGTTGGTCCAACGTGCGTTACACCCATCGTTACGCCACT 3607228 36 100.0 44 TTACGCCACT .................................... ATGCTGGACGATTTCGCGCTCTTCCTCGTCGGTATCATAAAAGT 3607308 36 100.0 41 TCATAAAAGT .................................... GTCGTCGAGGTCGATGTCGTCCTCGGGATGGAGCCACCAGT 3607385 36 100.0 38 AGCCACCAGT .................................... AGGAGCGCCGCGCCGAGCTACGATGATTGACGCTCGCT 3607459 36 100.0 40 GACGCTCGCT .................................... GAGGTTGGCCTCCACGGTCAACGTGTCGAAGGTGAGCTTT 3607535 36 100.0 42 GGTGAGCTTT .................................... CATCGCGGCTTGCGTCGGAACGTCCGGTCTGCTAAGAAAACT 3607613 36 100.0 40 TAAGAAAACT .................................... CCGGTCGGGTTCCTCTTCCATCAACTCAAGCAGAGCCGCT 3607689 36 100.0 40 CAGAGCCGCT .................................... TCCCCAGCCGTCACGACGGTGCCGCCGTCCGCGGGTGTTT 3607765 36 100.0 38 GCGGGTGTTT .................................... GCGGGCGAGCCCCCGCCGAAGAAACCGACGGTGATATC 3607839 36 100.0 39 CGGTGATATC .................................... CCAAGGGACGCGAGAGCAATAACGGAGTGGTGCGGGGAC 3607914 36 100.0 38 GTGCGGGGAC .................................... AATATTCATGCTCGCTGACACATAAGAATTGCCGTCAA 3607988 36 100.0 38 TTGCCGTCAA .................................... CACGTGCGGCGGACGCCATTACCCGAATGGCGGGCGAC 3608062 36 100.0 38 GGCGGGCGAC .................................... GCGGGCGCAGGGTGTGAGCGTCAGTCCGCGGTCCGCAG 3608136 36 100.0 39 CGGTCCGCAG .................................... TCCTCTCGGAGATGCGCTCCAAGGGGCTGGACTTCGCCG 3608211 36 100.0 40 GACTTCGCCG .................................... CCGTACTCCAGTACGGCATCCTGATTGAAACGGATGCTGT 3608287 36 100.0 43 CGGATGCTGT .................................... GGTGCGGACGACGACCATCCTGCCGATCATGTCCAGACCGAGT 3608366 36 100.0 38 CAGACCGAGT .................................... TCGCGCCGCTCGCCACCATCGTGATGTCACGACCAAAT 3608440 36 100.0 43 ACGACCAAAT .................................... CCGCGGCGATGCGCGTGCCGTCGGCTTTGGCGGCGTCCAGCGT 3608519 36 100.0 39 CGTCCAGCGT .................................... AGGTGCTGCCCCGTCGTGAGGCACGCGACGGCAATCGCT 3608594 36 100.0 38 GGCAATCGCT .................................... AGGGCGTCCCCGACGCCCAGAGCCGCAACCGGGACGCT 3608668 36 100.0 38 CCGGGACGCT .................................... ACCCCGCTTCCTTTAGCCGCTGAAACAGTCCAGCCGGT 3608742 36 100.0 40 TCCAGCCGGT .................................... TTGAGCATGTCGGAGACGCATCCGTTTTCGAGCATGCAGT 3608818 36 100.0 39 AGCATGCAGT .................................... AGGACGCGGGCCGAGGCGAAGGGGTCGGCCGTACAGAAC 3608893 36 100.0 CGTACAGAAC .................................... GACGAACGAC ========== ====== ====== ====== ========== ==================================== 26 36 39 CCGCAGCCCTCTCCCCGCTACCGAGGGGACTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [7,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-9.20,-11.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [43.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [228,190] Score: 0/0.18 # # Final direction: F [0.64,0.37 Confidence: LOW] >NC_011529 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 294184 30 100.0 37 GAGTATCCCC .............................. AAGGCTACGAGGCAAAGTATAAAGTGGAAGTCAGTAA 294251 30 100.0 37 AAGTCAGTAA .............................. CCAAACATTTCCATCCACCTCCATCTTTTTGCTTTTT 294318 30 100.0 38 TTTGCTTTTT .............................. TTGAAGAGATAACTACAGACATGGAGATGTTAGGGGTA 294386 30 100.0 38 GTTAGGGGTA .............................. ATATCGCCGCCCCATTCGACGACATAAGGGCGTATAAA 294454 30 100.0 39 GGCGTATAAA .............................. GAGGGAGAGCCATGAACACCTTCGGTCATTTTTTTGTGG 294523 30 100.0 35 TTTTTTGTGG .............................. CCCGATGTCGGTCAGGTCAGCAGCCCCGATGTCGT 294588 30 100.0 39 CCGATGTCGT .............................. GCACTCGGTTGATGGATTCGCCGAGCTCATGGCCGACAT 294657 30 100.0 37 TGGCCGACAT .............................. CTTGGAAATCTCCATTATGGGTTGATTGTAGTATTCA 294724 30 100.0 37 GTAGTATTCA .............................. CCGTTCGTGGTGTTCTTGAAGAGGCCCTTAATGAGTA 294791 30 100.0 38 TTAATGAGTA .............................. TGAGGTCGAGCTCGCCGACGAGGCGGTCATTAAGTCTT 294859 30 100.0 38 ATTAAGTCTT .............................. GCTACTACGACCGCAGGGATGGCTTTGCCGTGGAATTC 294927 30 100.0 38 CGTGGAATTC .............................. CGGGCCTCACCTCCATAGTACGCTTTTTCGATAGTTAC 294995 30 100.0 36 CGATAGTTAC .............................. GCGCTGGAAGCCGCCCGATACGTCTATGGCCCAATA 295061 30 100.0 37 TGGCCCAATA .............................. AGTTCCTGCTCCCACTTCTTGAGCCGGGCCTCGCGCT 295128 30 100.0 37 GCCTCGCGCT .............................. AGAACTCACCCGCGACCGCCTTCGGGTCCTTCCTCTT 295195 30 100.0 37 CCTTCCTCTT .............................. ATGCTAGTATTCCTGCAAAGTTTATAAACACAGAATA 295262 30 100.0 37 ACACAGAATA .............................. CTGCTTATTGGGGCTGCTGGGGCTGCCCTGGTTCTAG 295329 30 100.0 37 CTGGTTCTAG .............................. GGCCGGTAGTCTCCAGATCCAGGACTATCTCTCCCTC 295396 30 100.0 38 TCTCTCCCTC .............................. CTGTCCAGCAGGTCTTTCACCGTACCCTGCACAAACAG 295464 30 100.0 37 GCACAAACAG .............................. GCGAGATATGCCAGGACAAGGCCGAACGCAGCCGCGA 295531 30 100.0 36 GCAGCCGCGA .............................. ACCCCTTCGTCGTCCTCGCTTTCGCTTTCGAGGGTC 295597 30 100.0 36 TTCGAGGGTC .............................. AGGATGGCGTCGGAGTTTAAGGCGGTGGTGAGCCGT 295663 30 100.0 38 GGTGAGCCGT .............................. GAGATGCTAAAGGGAAAGGCCCCTGAACTCGCCGCGAA 295731 30 100.0 TCGCCGCGAA .............................. AGGGCGGCTT ========== ====== ====== ====== ========== ============================== 24 30 37 GTTTCAATTCTCCTAGAGTCTTATTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.10,-0.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [221,521] Score: 0.18/0.18 # # Final direction: R [0.37,4.95 Confidence: HIGH] >NC_011529 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 728608 30 100.0 37 AAACTGCCCT .............................. GCCTTGGCGTGCTCGCCGCTCTGGGCTTCGTCGTTTT 728675 30 100.0 37 TCGTCGTTTT .............................. GCCGGATTGAGAACTCCCCTCCCGGGTGGCTAATGGG 728742 30 100.0 38 GGCTAATGGG .............................. GAGGCCTAAAATATCAGCTCATAGACCCGGAGAACCTC 728810 30 100.0 37 GGAGAACCTC .............................. CTATTTTTACCTGCATCGGCTTCATTCCTGCCGGTAA 728877 30 100.0 37 CTGCCGGTAA .............................. TTCGTCGAGAAGGGCCTCGAGCTTTCGCTTCATTTCA 728944 30 100.0 36 CTTCATTTCA .............................. TTATGAACGCTGCACCCAGGCCAGCCAGGAAATCAA 729010 30 100.0 36 AGGAAATCAA .............................. GCGTTTTTCATAGCACTATCACCGACTATTTATTGA 729076 30 100.0 37 TATTTATTGA .............................. TCTTGGCAATGACTACTACGCTGGCCGCTCTGCGAGC 729143 30 100.0 37 CTCTGCGAGC .............................. ATAGAAAACTTAGGGTTATCGGGTATGTGAGGGTTTC 729210 30 100.0 37 TGAGGGTTTC .............................. TACCGCGGCCGAGGCCTTCGACGCGGCCCTCGCTAAC 729277 30 100.0 38 CCTCGCTAAC .............................. ACTACAAGTTCTACATCGCGCCGAACCCTGGATACTTT 729345 30 100.0 36 TGGATACTTT .............................. ACGAGCTGAACGTCCAGGTTCTCCAGGGCGACGCAG 729411 30 100.0 37 GGCGACGCAG .............................. AGTTGATGAACATCTTTGCTACATCATATTCGTTGAA 729478 30 100.0 38 ATTCGTTGAA .............................. CCGTGCGTGGTGGACACGATTTCAGAGCTCCTCAACGA 729546 30 100.0 38 TCCTCAACGA .............................. AAGGCCCACCCAAGGACCCCAGCCCCGACCAGGAACGA 729614 30 100.0 36 CCAGGAACGA .............................. AACATAGCCAAACGTCCTTCCTCATCAACGACAGGA 729680 30 100.0 37 AACGACAGGA .............................. ATGACTTCGCGGACATCAAGCTCAAAGAGCTTCATGG 729747 30 100.0 38 AGCTTCATGG .............................. TTCTACGAAGTCAATGTTCAGCTTCTTGTTCCTTGTCG 729815 30 100.0 36 TTCCTTGTCG .............................. TCGGAGAAGAGCACGGTCAGCTTGGCGTAGAGGTAG 729881 30 100.0 37 GTAGAGGTAG .............................. TCCACTCATCCGGCCACAGGCGCTCATTCTCTTTAAT 729948 30 100.0 38 TCTCTTTAAT .............................. GTAATCAAGGCCCTTCCTGACCCATTCCTCCACTTCCT 730016 30 100.0 37 TCCACTTCCT .............................. ATCCTATCCGAGTTCGAGCCACTCAGATAAGTGCGGT 730083 30 100.0 36 TAAGTGCGGT .............................. GAGTGTCTGCCGCTTCAAGCAACACATCATACCTGC 730149 30 96.7 TCATACCTGC .............................T AACGATGAA ========== ====== ====== ====== ========== ============================== 24 30 37 GTTTCAATAAGACTCTAAGAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.60,-1.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [518,81] Score: 0.18/0.18 # # Final direction: F [0.86,0.37 Confidence: MEDIUM] >NC_011529 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 818816 29 100.0 39 AAAGTGTCCT ............................. GCCCACGACTTTTTAGCGGCGACCGCCGCGAGTTCTTCC 818884 29 100.0 35 GAGTTCTTCC ............................. GAGGGGCCGGGCCTCAAAATCCCCCAAAGTCCCCC 818948 29 100.0 37 AAAGTCCCCC ............................. TGGCCCGAAACCCTTCCGGGAGAGTGAGGACCCTCGA 819014 29 100.0 39 GGACCCTCGA ............................. TGTGGGTTTCACCGGCGAGGAATCCGAGAGAGAATGTAA 819082 29 100.0 37 GAGAATGTAA ............................. ATGAAGAGGGAAGAGTTCATCAAAACCCTCCTTGACG 819148 29 100.0 36 CTCCTTGACG ............................. TTGAGTTTTCCCGAGCTCGACGCGGTTATTACGCTG 819213 29 100.0 36 TATTACGCTG ............................. TTGGTGGCCTTCTGGTTCATTGGGCGCTGACGAACA 819278 29 100.0 37 CTGACGAACA ............................. CCGTTTCCACCGAGACCGGCCATCCAACCGAACATTT 819344 29 100.0 36 CCGAACATTT ............................. CTTAGGTCTCTGAAAAGACTCCTTTCGCTCTTATAG 819409 29 100.0 40 GCTCTTATAG ............................. ATCAGTCGCTCCGGTAAGCTGCTTGATTATTGTGTTGTCC 819478 29 100.0 37 TGTGTTGTCC ............................. CTCGACCTTACCCCGCGTCCAGAACTGAATACAAAAC 819544 29 100.0 37 AATACAAAAC ............................. CTCGCGAGGTAGTAGAACCCGCCTCTCGCCCTCTCGA 819610 29 100.0 39 GCCCTCTCGA ............................. CACCCTGAAGGGGGAACAACTCACGGAGGAGCAATAGAA 819678 29 100.0 37 AGCAATAGAA ............................. CCTGGTAAACCTTCAACAAACTCATCAACGGCCTCCA 819744 29 100.0 37 ACGGCCTCCA ............................. GTCAAACCACCCAAAATCGCTCTCATCTCCAACCGAC 819810 29 100.0 TCCAACCGAC ............................. TTAATTCTGTA ========== ====== ====== ====== ========== ============================= 16 29 37 GTTCCAGTAGGACAGAATTGTGTGGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.17%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [494,291] Score: 0/0.18 # # Final direction: NA [0,0 Confidence: NA] >NC_011529 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================== ====== 828042 18 94.4 49 GGTTTCCGTA .......G.......... ATGGCTCCGGCCCGCCGTACTGGGGGAAGAACCTGTAAATGTTTCAGTG 828109 18 100.0 48 TGTTTCAGTG .................. GCTTGACGTAGATGGTCGTGGTGTTCGTGCTCAGGTCGAGTTTCAGTA 828175 18 100.0 47 AGTTTCAGTA .................. ACTGTCCGGTGCCCGCCCAAACTGTGACATGGTGCTCGGTTTCAGTA 828240 18 100.0 48 GGTTTCAGTA .................. ACTAATGCGGCGACCTCTAACCTAACGAAGCCCGGTGAAGTTTCAGTA 828306 18 100.0 56 AGTTTCAGTA .................. ACAGATCCTCGACCAGGTCGCTGATGAGCTTCGGGCCGGACTCCAGGGTTTCAGTA 828380 18 100.0 51 GGTTTCAGTA .................. ATGTCTCCTGCTTTTGCTCTTCGCTGAGCCACTCGCTTTTGGTTTCAGTGG 828449 18 100.0 51 GTTTCAGTGG .................. ACACGTATTCTGTCAACAGCCGATACGTTACTACTATATACGTTTCAGTGG 828518 18 94.4 49 GTTTCAGTGG .....A............ ACTCGATCGTGTCTGTGTTATAGTCAGCGAGGTAGTCAACTTTTAGTGG 828585 18 94.4 CTTTTAGTGG ................G. AGTACCTT ========== ====== ====== ====== ========== ================== 9 18 49 GGACAGAATTGTGTGGAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [72,342] Score: 0.18/0.18 # # Final direction: R [0.41,0.45 Confidence: LOW] >NC_011529 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 994803 29 100.0 40 NNNNNNNNNN AGAGTC..A.TG................. ACCGATGTTGTCAGCCTGTCGTTTTCATACACTTATAAAG 994872 29 100.0 39 NNNNNNNNNN ............................. TGCACTCCTTTATCGCGGCCCGGAACGTGCGGAGGAGGG 994940 29 100.0 31 NNNNNNNNNN ............................. TCGCTTCGACGGTGGCTTTTGTCTCCGGATT 995000 29 100.0 29 NNNNNNNNNN CA...TCGT.TCA.TTC........AG.. GAAGTTGGCAACTCCAACACATGCGCCCG 995058 29 100.0 40 NNNNNNNNNN ............................. CAGATCGCCTGCTGGGTCTGGCTCATCTGGCCGTGCTCGC 995127 29 100.0 40 NNNNNNNNNN ............................. CCGGCATCAGGGCTGACACCTACTCAACGACCCTCTATGG 995196 29 100.0 38 NNNNNNNNNN ............................. AGGAGGAAGATGGCAAGTATCATGTTTATGATAAGAAG 995263 29 100.0 37 NNNNNNNNNN ............................. ACGAATCTATCAACCGAGTCAATGGCCCGAGTTCTAG 995329 29 100.0 38 NNNNNNNNNN ............................. CCATTGGCCCCTCTTCAAACAACGTCAAGGTAAAATTG 995396 29 100.0 37 NNNNNNNNNN ............................. CGGCGAGCTCGACCTCATACGTCACGACCACACCCTG 995462 29 100.0 38 NNNNNNNNNN ........................A.... CTACCTCAAGCAGTAGGAACGTGTTGTTCCCGTCCGTG 995529 29 100.0 39 NNNNNNNNNN ............................. CTACTGCTATGATAAACTCCACTGCTCTTTTTAGATGGG 995597 29 100.0 37 NNNNNNNNNN ............................. ATAAAGGGCTCGGGGAGGGTATTCTCCGAGACCCTTG 995663 29 100.0 37 NNNNNNNNNN ............................. TCTCCCACTCAATCTTATCGATTATCCTATCAATGTG 995729 29 100.0 38 NNNNNNNNNN ............................. TTTGGGCGACTCTGTTTGCTTTTGCGTTCTGGTATCTG 995796 29 100.0 39 NNNNNNNNNN ............................. ATAAAACGGCGGTTTCGATTACTTGTGTCTTGTTCTCTG 995864 29 100.0 37 NNNNNNNNNN ............................. TTCGCGTTTGCGACCTGTTCAGGGGTGATGTTGCCCG 995930 29 100.0 38 NNNNNNNNNN ............................. TTGCCGTGCCGGTGAGGGCTGCTGATGTTCAATACTAG 995997 29 100.0 37 NNNNNNNNNN ............................. GGCAGCTGAGACGGGCGAGAGCGTTGTGTTCACTGTG 996063 29 100.0 39 NNNNNNNNNN ............................. AAGCCGAATCACTTTTGTATTGAGCCCATATTTTATGAG 996131 29 100.0 39 NNNNNNNNNN ............................. TGGCACCCTGCCAAGACTGCTGCGGCAAAGCTCTGGTTG 996199 29 100.0 41 NNNNNNNNNN ............................. AAACAGAGCAGAGACTCTAAAGAGATGGGTGGGAATTAGTG 996269 29 100.0 39 NNNNNNNNNN ............................. AAAGAGATAAAGCGCGTCGTCCGTGACGGTATTGCCAAG 996337 29 100.0 36 NNNNNNNNNN ............................. CTTGACTTCCTTCTCGATCTTGAGGCTGTCCTTCTG 996402 29 100.0 37 NNNNNNNNNN ............................. CCACGTCGCCCTGGTAGTAAAAATAGACGCTGACGTG 996468 29 100.0 37 NNNNNNNNNN ............................. ATGCAGTAGTGCTTAAACCAGCTCTTGATCTTCTTTG 996534 29 100.0 37 NNNNNNNNNN ............................. GGAGACTATGAAACCCTCGAAGCCGATGTAAACTGTG 996600 29 100.0 39 NNNNNNNNNN ............................. ATGAGCATCAGCCACGGCTCAGTGCCCCTGCTCAGGAAG 996668 29 100.0 39 NNNNNNNNNN ............................. ATGAAGGCTCAGGCCGACGCGATAAGCCCTGAGAACACG 996736 29 100.0 39 NNNNNNNNNN ............................. TTCAGAAACCTTGCAATACTTATGATAGTACTGAACCTG 996804 29 100.0 38 NNNNNNNNNN ............................. TCGGAACGGCCTTGCGGTAGATGATGTAACCAACGAGG 996871 29 100.0 38 NNNNNNNNNN ............................. CTGCATACAACTCGCAAGAGACCTCGTTGAATATGGCG 996938 29 100.0 40 NNNNNNNNNN ............................. CTATGGTCTTGGCCTGGCCGCTGAGCTGAGAGAAAACGAG 997007 29 100.0 38 NNNNNNNNNN ............................. CTGAGCGTCAGGTTTCCACTCCAGGCCAGCATGATTTG 997074 29 100.0 38 NNNNNNNNNN ............................. TCGGCTTCATGAAGTTCTTTTTCGGCAACATCCTTCTG 997141 29 100.0 37 NNNNNNNNNN ............................. CTCACCGTCAGGCGTGACCAAAATGTGGAGCTCGTTG 997207 29 100.0 39 NNNNNNNNNN ............................. GGTTGCCATCCTGCTGAATATCGCCGGCCTCAATCCTTG 997275 29 100.0 39 NNNNNNNNNN ............................. ATAAGCGTCCTGACGGCCTTATCAATGAAGTTGATGTGG 997343 29 100.0 39 NNNNNNNNNN ............................. GGTGTGGATCATGTGAATCTCGTCCTGGGTCAGGACGGG 997411 29 100.0 39 NNNNNNNNNN ............................. AAATCAAAGCTGCCCGTGTGCTGTACTCCGACATACTCG 997479 29 100.0 38 NNNNNNNNNN ............................. CAACGCTTGGCATTGCCATAGCTCTTGTACTAGCCATG 997546 29 100.0 39 NNNNNNNNNN ............................. CCCCCTGACAACGAAGAATGAGCCTGCAATGTTACCAAG 997614 29 100.0 37 NNNNNNNNNN ............................. AGTTATTAGTTTGGCCAAGCGCATCTTCCAAAACTCG 997680 29 100.0 38 NNNNNNNNNN ............................. CTCAATCAGAGGCTCTGGCTGAGTTTCCTCAAATTCAG 997747 29 100.0 39 NNNNNNNNNN ............................. GTGAGGATGGCAAAAAGGAAAACCTCTAAGAAAATCAAG 997815 29 100.0 37 NNNNNNNNNN ............................. TGGCAAAGTGCCGAGGGCTGAACTCCGCGAAGCGACG 997881 29 100.0 38 NNNNNNNNNN ............................. TCCCGTTCACGAGCTGTTGGCCGGCCTGCGCAATCTGG 997948 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 48 29 37 TTTCAATTCTCTTAGAGTCTTATTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.97%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.80,-0.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [24-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [347,498] Score: 0/0.18 # # Final direction: R [0,4.91 Confidence: HIGH] >NC_011567 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 804177 29 100.0 35 TTTTAGGGGG ............................. ACACATGATGATATAGTCAAGCTGCTCGCGAATAT 804241 29 100.0 38 TCGCGAATAT ............................. CTTGATCGTGAACGGCCGAAAGTTCTTATTGTTGATGA 804308 29 100.0 37 TTGTTGATGA ............................. TTGTTCAAAGTTGCGAAGTAGAAAAGACAAGAATATC 804374 29 100.0 37 CAAGAATATC ............................. AGCGAAAAAGAAGGAAGAAATTATTGTAGCACTCAAT 804440 29 100.0 35 AGCACTCAAT ............................. TTGCTCTTTCTGCACTCATTTATTCTTAGTTTTCC 804504 29 100.0 38 TTAGTTTTCC ............................. ATCAGATCACTAGCAGCAACAGTAATATTAGTAGTAGA 804571 29 100.0 38 TAGTAGTAGA ............................. CTCCTTCGCGGTTTGTAAGAACACTTGAGACTTTTCCC 804638 29 100.0 37 GACTTTTCCC ............................. TGCCAGATAAGTCGGTCGCGAGTAGTTGCGGAGCAGG 804704 29 100.0 36 GCGGAGCAGG ............................. CATATCTGGTCCGCTTGGTCCACGTCGTTTGTTTCG 804769 29 100.0 37 GTTTGTTTCG ............................. TTCATAAGCACACTCGATCATTTCAAACACTTTTTCG 804835 29 100.0 38 CACTTTTTCG ............................. ATTGATAAATTGTGTTTAAACGGATGTAAACAAAAAGT 804902 29 100.0 36 AACAAAAAGT ............................. TGAGATTGCAAAACGTCCTGGAATCAAATCCGCTTT 804967 29 100.0 36 AATCCGCTTT ............................. ATCTTCGGCATTTTGAAGTTTTTAACCGTGCTAACA 805032 29 100.0 35 CGTGCTAACA ............................. TTGAAACACAGGTGTTTTTTCTGACTTACCGCCAA 805096 29 100.0 35 TTACCGCCAA ............................. ATTGCATTTTTGACATGATACATCATCAAAACTAC 805160 29 100.0 37 TCAAAACTAC ............................. CGCACCGCCATGTTTCATCCGCCCAAGCGCCTCTCTA 805226 29 100.0 36 CGCCTCTCTA ............................. CCTCATGTTCTGCTTTGCAATCAGTACACACGGCAA 805291 29 100.0 36 CACACGGCAA ............................. CTTTGTTTCCAGCGGAATTCGCTTTTTCAAATACAG 805356 29 100.0 37 TCAAATACAG ............................. AGCTTTTCTTTCCCGACATTCACAAAAACTCGCAATC 805422 29 100.0 36 ACTCGCAATC ............................. TAATCTCTGAAGAAATCCTAGTATTCACTCGAACCA 805487 29 100.0 37 ACTCGAACCA ............................. TGTTCCTTGAATTTTGCTTCCACTGCTTTTTGAACAG 805553 29 100.0 36 TTTTGAACAG ............................. GACGTTCCGAATGAAGAAGCCGAATGGCTTCTTCAA 805618 29 100.0 38 GCTTCTTCAA ............................. AAATTGATGGATGAAGCGATGCGTGAAGCCGCTTACGC 805685 29 100.0 37 CCGCTTACGC ............................. AAATGGAGAGCAAAAAGGAAAATGCAAAGGATTTGGA 805751 29 100.0 38 AGGATTTGGA ............................. AGAAAACAGCAATGTTGCTTCTCAATCACTTGGTGATA 805818 29 100.0 36 CTTGGTGATA ............................. TCGTGAAATAAAACAGAAGGCGCTGGCGCCGCGACA 805883 29 100.0 37 CGCCGCGACA ............................. ACAATCTGCCACGTTTTTTTTATGACAGGAACGATGG 805949 29 100.0 35 GGAACGATGG ............................. TTGCAACGCATCCGCTCTATTTTTCTCTTTATCCA 806013 29 100.0 38 TCTTTATCCA ............................. ATTTTCGGCATTTTGAAGTTTTTTACAAAGTCTGCAAA 806080 29 100.0 36 AGTCTGCAAA ............................. GCGGTGGAGAAATGAAACTAAAGGACATCGCCGCTC 806145 29 100.0 37 ATCGCCGCTC ............................. GCAAAAGAAGGCAAGTCTTATGAGCAAATCCTCCGAG 806211 29 100.0 40 ATCCTCCGAG ............................. ACGATGATTTTGCATTTTTCGCTGTTTCTCTCGGCTCTTG 806280 29 100.0 37 TCGGCTCTTG ............................. AATTCGCGAAGTAAGTTTTGACCTAAACCGATCGTGT 806346 29 100.0 38 CCGATCGTGT ............................. TATTGACGCTATTTTTTAAAAATTAAACTGATTTCATT 806413 29 100.0 38 TGATTTCATT ............................. GCATATTTTTCTGATCCTTCTGCTCGTGCTACTCTGTT 806480 29 100.0 36 CTACTCTGTT ............................. GCAAAAGAAGGCAAGTCTTATGAGCAAATCCTCCGA 806545 29 100.0 38 AATCCTCCGA ............................. AGGATTGAAACGAACGTGTAGCACGGCTAGCACGTTGA 806612 29 100.0 36 AGCACGTTGA ............................. TTGCTTTAACTTGTTGTTCAAACGGCAAGTCCTTAA 806677 29 100.0 36 AAGTCCTTAA ............................. TGTTTTAACCTCATCTTTTTTCCCTTCCTCTTTCGC 806742 29 100.0 38 CCTCTTTCGC ............................. CTCTAATATGGGGATACATGTTGAAATGTCTGGTCAAG 806809 29 100.0 34 TCTGGTCAAG ............................. TACGATTTCGAAAATGAAAACGGTGAACGCGTAA 806872 29 100.0 39 GAACGCGTAA ............................. ACGCTACTCAAGCCTGGTGCAGAAAAGATTCAGATGTTG 806940 29 100.0 38 TCAGATGTTG ............................. ATTTGTCGATAAAGTTGTTGACTTCAAATATTTAGAAC 807007 29 100.0 36 TATTTAGAAC ............................. AAAGGGTCAATATCAATAAAATCTGCTTCATCTACG 807072 29 100.0 39 TTCATCTACG ............................. TAAGCAAAAGGTTTATGCTCATGTCGTTAGCTATCTCTA 807140 29 100.0 38 GCTATCTCTA ............................. CGATAAAGCCATGTCCAATGTCGCGACGACCTCATCAG 807207 29 100.0 39 ACCTCATCAG ............................. TCGCTTCAAAAATACCCGCTAATTGAAAATTTTCTTCTG 807275 29 100.0 38 TTTTCTTCTG ............................. TGAAGAATTCGCAGACTGTTTGCATTTCATCTTGTCGA 807342 29 100.0 34 ATCTTGTCGA ............................. GGTTTTGACCTCATCTTTTTTCCCTTCCTCTTTC 807405 29 100.0 37 TTCCTCTTTC ............................. CCCAGTGATCAAGGCACGTTCGCTTCGCTCACTTAAC 807471 29 100.0 36 CTCACTTAAC ............................. TACATAGACGTCATGAGGAAGAACAGAGTAGTCGCG 807536 29 100.0 35 AGTAGTCGCG ............................. TTCAGAATGAAGAAGCCTTATAGCTTCTTCAACAA 807600 29 100.0 39 TCTTCAACAA ............................. GATCAATTTTTCAGACGGTATGAAAAAGAAGGGGTACGC 807668 29 100.0 38 AGGGGTACGC ............................. GTGGGTCGGAAAGGAAAGCGGAGGGAAGGACTTGAATG 807735 29 100.0 36 GACTTGAATG ............................. GACGAGTTTTTGATGGGTTCGAACGGTGTCGTTTTG 807800 29 100.0 36 TGTCGTTTTG ............................. TTGCAACACGTCCGCCCTATTCTTCTCACGTGTCGC 807865 29 100.0 35 CACGTGTCGC ............................. AACCGAGTCGTCTCGTTCTCGCTAACCGAGTCGGC 807929 29 100.0 36 CCGAGTCGGC ............................. CAGTCGCTGTTCAGGCTTGACGTAATCCGCTGGCGC 807994 29 100.0 38 CCGCTGGCGC ............................. TACAGTCGAAGTTCGAGCTTACAGGCGACGCGGGAGGC 808061 29 100.0 39 CGCGGGAGGC ............................. TGGGAAACGGTGTTTGTGGAAGATGGCAACGAAATTACG 808129 29 100.0 36 CGAAATTACG ............................. AACAAAAGCTAGTTGAAGAACGTAGGGAGTATCTGA 808194 29 100.0 40 GAGTATCTGA ............................. CCGTATTGGCTGAAAGACAATCAAGTGATATGTATGATCC 808263 29 100.0 35 TGTATGATCC ............................. TTCAGATTCTACTTCTACCCGTTCGGTCATTCGTA 808327 29 100.0 40 GTCATTCGTA ............................. TTCTTAATTTCATATGGTGCTCGACGTTTCTTTGATATGA 808396 29 100.0 40 TTTGATATGA ............................. CAAAAGATTCAAATATGATTGAGAGCACGCTTTTAACTGT 808465 29 100.0 39 TTTTAACTGT ............................. CGTTGCCGATCGTTTCAGCATATAAACGCTGTATAGCTT 808533 29 100.0 41 TGTATAGCTT ............................. AAGATGTATAGCGATGATAAAACGCATGACCTAATATGCCG 808603 29 100.0 38 TAATATGCCG ............................. CAATGATGTCATCAATAGCATTAGAAACAATCATCCGA 808670 29 100.0 37 AATCATCCGA ............................. ATCACCCACATTTTCACGTTTTACTTGGCGTTAAACC 808736 29 100.0 37 GCGTTAAACC ............................. GTCTGTGATGTCCGTATTGTTCGTAATAAGCGGAATA 808802 29 100.0 36 AAGCGGAATA ............................. ATCGCAAAACGGGCCGTTTGGGATCAGCATTCAAAA 808867 29 100.0 38 GCATTCAAAA ............................. CGAGAGAGGCGGAAGAACTTTGGGGATTGGCACAAAAC 808934 29 100.0 36 GGCACAAAAC ............................. TACAAGCTCAGCATCGTTACATACAACAAGAAACAC 808999 29 100.0 35 CAAGAAACAC ............................. ATGACAAAACCAGAAAAGAAATTCACATACCTTGC 809063 29 100.0 40 CATACCTTGC ............................. TTCAAGAACGGGAAAACAGGTCAATCGGAAGTGCAGTTTA 809132 29 100.0 37 GTGCAGTTTA ............................. CAACAAAACGATAGAAACGCAACACTTCCGCGTCAAG 809198 29 100.0 39 CCGCGTCAAG ............................. TAAAAAGGAGTGACAACATGAGTATTTTCCGTGTTGAGA 809266 29 100.0 37 CGTGTTGAGA ............................. TTGGTTTTGCTTTACGCATTATTAGCTTCATTCATAA 809332 29 100.0 34 TCATTCATAA ............................. TCAATAACAAACACATCGCCAGCTTGCACGTTAA 809395 29 100.0 36 TGCACGTTAA ............................. ATGGATTGACGACATTGGGGAAGAACTTGTGATTGA 809460 29 100.0 36 TTGTGATTGA ............................. TCAAATGGATCAGTCATCGGTTCTTGTTGTGGTTGT 809525 29 100.0 40 TTGTGGTTGT ............................. GACATATACGAAACAATGGAATTAACGCAACAACGATATA 809594 29 100.0 37 CAACGATATA ............................. TTAATACCTTCCATCGTTCCTGTCATTCAAAAAACAT 809660 29 100.0 37 CAAAAAACAT ............................. GTATTTAGTGTAGTATTCATTCAGTTCCTGCATGTGT 809726 29 100.0 35 CTGCATGTGT ............................. ATAAACAAAAACCACCGCCTCAGCTTATTCGCTTG 809790 29 100.0 TATTCGCTTG ............................. AAAGTGCCAG ========== ====== ====== ====== ========== ============================= 86 29 37 GTTTTATCTGAACGTAGTGGGATGTAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.07%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [191,172] Score: 0/0.18 # # Final direction: NA [0,0 Confidence: NA] >NC_011566 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =========================== ====== 1020817 27 100.0 33 ATTGTTGATA ........................... GTAGCACTGCGCCCGCTGGCCAAACTTCTGCCG 1020877 27 100.0 33 ACTTCTGCCG ........................... GCTATGGCCGAATATGAAAAATCGAGTTGTGGA 1020937 27 96.3 GAGTTGTGGA .............C............. TGTCAGTGAAGTACAGTCAATTAATCATGCTTTGATAT ========== ====== ====== ====== ========== =========================== 3 27 33 GTGAACTGCCGAATAGGCAGCTGAAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:51.85%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [132,195] Score: 0/0.18 # # Final direction: F [1.05,0 Confidence: HIGH] >NC_011567 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 812915 29 100.0 37 TACACTACAA ............................. AGAAGGAATTTTGTATCATTTTTGTATCAGTCTTGTG 812981 29 100.0 38 CAGTCTTGTG ............................. AAGCATCGGTTAGATTACATTAAAAGCTTCAAGTATGT 813048 29 100.0 35 TCAAGTATGT ............................. TTATTATTTGCATGAATAGCCGCATCGAGGCGTGC 813112 29 100.0 38 CGAGGCGTGC ............................. TTTTTGGAAGTTATACATAGTTTGAGACGGATTTAAGA 813179 29 100.0 39 GGATTTAAGA ............................. TAGAGATGAAGCCCTTTTACAGCGTCCGCAAAGCGTTTT 813247 29 100.0 36 AAAGCGTTTT ............................. TTGATAAACACGTTAACAAAAAACATCGCATGTTCC 813312 29 100.0 37 CGCATGTTCC ............................. GAATATTACGAAAAGCTTGAATGGATGCTACCTGATG 813378 29 100.0 39 CTACCTGATG ............................. GGGAGTTCTACACTAATCTTTTCAGGGAACAACTCATTC 813446 29 100.0 36 CAACTCATTC ............................. GAGCGGTTTGACGTGGAATTAGGAGCGGAATTGTTT 813511 29 100.0 37 GGAATTGTTT ............................. GTTGAATTTAATGATGGAAAGACGATGTATAGTGCTG 813577 29 100.0 37 TATAGTGCTG ............................. AGGAGAAACAGAAGTGGAAAGCATCGTTCATTCCTAT 813643 29 100.0 35 TCATTCCTAT ............................. AATGAACGCTCCTAAACTTGCGAATAAACCTGTAA 813707 29 100.0 36 AAACCTGTAA ............................. TTTTTTCGTCTGACGAATATTTTTTCGTATATACGT 813772 29 100.0 36 GTATATACGT ............................. TAAACTTCGTGTTCGGTGACACTTTCACAAATTTTC 813837 29 100.0 37 ACAAATTTTC ............................. ATAAGTTCAAAATGCCCTTATAGTGCAATATTTTTTA 813903 29 100.0 35 ATATTTTTTA ............................. GACGCAGAAGATGACACTGGCATCGAATGGCTCAA 813967 29 100.0 38 AATGGCTCAA ............................. CTGGGAATGGTTTGAGGAACAAGTGAAACCGTATCGTG 814034 29 100.0 36 CCGTATCGTG ............................. TGTCACCCCTTACGCTTTCTTGTGCACGTAAATGGC 814099 29 100.0 38 CGTAAATGGC ............................. TAATGACGCTATTTTGTTAAAAAAAATTAATTAATTTT 814166 29 100.0 37 AATTAATTTT ............................. TGAAATAAAACAGAAGGCGCCTGCGACGCGGACAGCG 814232 29 100.0 41 GCGGACAGCG ............................. AAGCCGAATATGCGTCATTTGTAGAAAACGGGCATCGCATC 814302 29 100.0 35 GCATCGCATC ............................. CTTCTTCTTTCGAGTATGTTTTTGTATCATCTAGC 814366 29 100.0 35 ATCATCTAGC ............................. TATCGGAGAAAGTGAATCGACACAAAGCTTCTTAA 814430 29 100.0 37 AGCTTCTTAA ............................. TCAAGCGTCACATCGGCGACTAACTGAAAAAGAACGC 814496 29 100.0 38 AAAAGAACGC ............................. CTTGCCGAGTTGGAACGGATGTATATCACGTTGTGTTG 814563 29 100.0 34 CGTTGTGTTG ............................. TACTCGTACAATTCAATAACATGCCCCGATACAA 814626 29 100.0 39 CCCGATACAA ............................. AATCGTCCCCGTTCGCAGGGTAGTTAGTACCTCGCTGAA 814694 29 100.0 40 CCTCGCTGAA ............................. AAGACATCAACGATTCGATGATCGAGAACCATCTCAACCG 814763 29 100.0 35 ATCTCAACCG ............................. AGCATAGCTTCGCGGTGTGGTTTGTGCCATTCGAG 814827 29 100.0 35 GCCATTCGAG ............................. TCCACCGAACAACGAGCGGTTGCTTGGTTGACAAA 814891 29 100.0 39 GGTTGACAAA ............................. TCATAATGAAAGGCGGTACTTTTAAACCCAACCGCCCTA 814959 29 100.0 37 AACCGCCCTA ............................. GAAGAATACGCAATTGCTGAAAAAAACGGGATATCTC 815025 29 100.0 41 GGGATATCTC ............................. ATTCAAAATATACATGACATTATCAACCTGCCTTGTATCAA 815095 29 100.0 36 CTTGTATCAA ............................. TGTTCGTCCAGTTCAACAATTTCCGCAAGTTCAAAA 815160 29 100.0 37 AAGTTCAAAA ............................. ATGAATGTGAAGCGTACCATAAGTTCGAGCCAGTGAA 815226 29 100.0 36 AGCCAGTGAA ............................. AAACAAGTGGCGTGGGCTAGCGATATTCGTGATAAG 815291 29 100.0 36 TCGTGATAAG ............................. CCACGTCAGTACTTTGAGTTGTTTTTTGGAAAATGG 815356 29 100.0 36 TGGAAAATGG ............................. TAATGGATAGCGGAAATTGCATTGTTATCACCAAAA 815421 29 100.0 36 ATCACCAAAA ............................. TATTTAGCGGAGATGTGCGTATTAAGCCGGATTTAA 815486 29 100.0 40 CCGGATTTAA ............................. AAGACATCAACGATTCGATGATCGAGAACCATCTCAACCG 815555 29 100.0 39 ATCTCAACCG ............................. AATAAAAAACGCCACCACGTCGCACACATCGTGCGAGGT 815623 29 100.0 39 CGTGCGAGGT ............................. TTCTTTTCGAAAAAGAATCGGCTAATCTTCCTCTTTTGC 815691 29 100.0 38 CCTCTTTTGC ............................. AGACTTCCGCAAAAACAAAATCATTCGTGAAATGGACA 815758 29 100.0 39 GAAATGGACA ............................. CCGATCATTTGTTCCAACATAGGGCATAAAACATGTATG 815826 29 100.0 35 AACATGTATG ............................. AGATATATTTACGTTTGACGGAACAGCCCCGCGCA 815890 29 100.0 35 GCCCCGCGCA ............................. TATTACCACACAGCTTCCCTTCGCTATTTTTTGTC 815954 29 100.0 36 ATTTTTTGTC ............................. CGTTTTTGAAACTCTATAACCGTTACATATTTGAGA 816019 29 100.0 38 ATATTTGAGA ............................. GAGGAACAAACACAAACGCCAGAACCCGGACAGACCGA 816086 29 100.0 37 GACAGACCGA ............................. ACGGCAATATTGAAACGTAGCAGGGTTGTCTTTTTCC 816152 29 100.0 36 GTCTTTTTCC ............................. CAAACAGAAAGTTTTTTGGTTCTTTTTTTCAAAAAA 816217 29 100.0 37 TTTCAAAAAA ............................. GACGCTCTTCAAAGGGTTTCGGTCGACGTGGCATGTC 816283 29 100.0 38 GTGGCATGTC ............................. AGTAAAGCGGATGAATGGCTAACAGAAGAAGGTTTATT 816350 29 100.0 36 AAGGTTTATT ............................. TGTTTCCAATGATTTTGTGAAGTGGCGGTCTAAATA 816415 29 100.0 39 GGTCTAAATA ............................. GTCAACTTGGCAGAAGAAGCGGCAATGACCGCACAACTA 816483 29 100.0 40 CGCACAACTA ............................. ACCGAAACAGAAAGAATTTAAAAGCAAAAAGGGAAATAAA 816552 29 100.0 36 GGGAAATAAA ............................. GACGCTAAAGAACTCGAAGGAATGGCTTTTGAAACT 816617 29 100.0 39 TTTTGAAACT ............................. CAAGAACAAGCGACATTAGTGTTAAAGGAGTTTATGCAA 816685 29 100.0 37 GTTTATGCAA ............................. CGCCAATACCCAGCGGAAGGGCTTGTCGCGTTGTTGG 816751 29 100.0 37 GCGTTGTTGG ............................. CTCTTTCACTTCATGAGGATTTAATTTGAATTTTTCC 816817 29 100.0 GAATTTTTCC ............................. GTTAAAGTGTCTTGACCATTCATAGACCGTTCTCA ========== ====== ====== ====== ========== ============================= 60 29 37 GTTTTATCTGAACGTAGTGGGATGTAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.07%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [182,147] Score: 0/0.18 # # Final direction: F [0.27,0 Confidence: MEDIUM] >NC_011586 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2988220 28 100.0 32 NNNNNNNNNN ..........A.A.....T.T....... GTAAAAGTGACTTACCACAACCGTGGTTATTT 2988280 28 100.0 32 NNNNNNNNNN ..........A.........T....... CTTATGCTTTCTTCCGTTATCCGTACGCCAAC 2988340 28 100.0 32 NNNNNNNNNN ..........A...G.....T....... AAGTATTTTAAAGCATAAATCCTTTTAGCAAA 2988400 28 100.0 32 NNNNNNNNNN ..............G.A........... AAATGACTGTGACGGGAGGTGGATCGCCTTGA 2988460 28 100.0 32 NNNNNNNNNN ............................ GCGGTATATTGTTTTATTCTTTACTTGGAGAA 2988520 28 100.0 32 NNNNNNNNNN ............................ TTATCCCCTACGCACTTGAAAAGATTTCCGCT 2988580 28 100.0 32 NNNNNNNNNN ............................ ATTTCGGGCACTTATGAATAACTCGTTCAACA 2988640 28 100.0 33 NNNNNNNNNN ............................ TGTTGGATATTGTCCAATTTCCTCATTTTTTGG 2988701 28 100.0 32 NNNNNNNNNN ............................ TTATCGGGGTTGTGAATGGCCGGCCAATGACA 2988761 28 100.0 32 NNNNNNNNNN ............................ AAATTTTTACCCCCATAAATAGCTTTTAGTTG 2988821 28 100.0 32 NNNNNNNNNN ............................ TATTTTTCTAACTTTGGTTCAAGTCGTGTTCG 2988881 28 100.0 32 NNNNNNNNNN ............................ CTCCCCACATCTTGACCAAATTGCACATCCAA 2988941 28 100.0 32 NNNNNNNNNN ............................ TCTCGTCTTTCTCAGTCATAATCTTTGTCCAA 2989001 28 100.0 32 NNNNNNNNNN ............................ TATTCGTGACCTTGTCCAAATCTGCGAGATAT 2989061 28 100.0 32 NNNNNNNNNN ............................ TTTTTGGCATCTCAAGAACTTGCTCGTGCTAT 2989121 28 100.0 33 NNNNNNNNNN ............................ ACAAAAACTCATGCCATCGTAACTGATAAAGAC 2989182 28 100.0 32 NNNNNNNNNN ............................ AAATAGTTCCCATAATACTTGCGTAGGTTGAA 2989242 28 100.0 32 NNNNNNNNNN ............................ CATATGTCACTTCACCATCTGAATTTCGGACA 2989302 28 100.0 32 NNNNNNNNNN ............................ AAGGCATATTTGCAAAACCTTCACGATGAGAA 2989362 28 100.0 32 NNNNNNNNNN ..........A................. TTTGCTTTGATGTTTCATTCCCAGCAATAAAA 2989422 28 100.0 32 NNNNNNNNNN ............................ TTGCGACTTTGATTTCTACTTTAGCTATCAAA 2989482 28 100.0 32 NNNNNNNNNN ............................ TACTGGTGGCTCATACCACTCAGGCAATTGTT 2989542 28 100.0 32 NNNNNNNNNN ............................ GTTACATCGATACGGGTCATATTGTTGTACAA 2989602 28 100.0 32 NNNNNNNNNN ............................ ACGTACTCAGCCAAATTGTCGGATCAGACAAC 2989662 28 100.0 32 NNNNNNNNNN ............................ TCTTAGTGAATCACCGCCACTCTCTACTTTTA 2989722 28 100.0 32 NNNNNNNNNN ............................ CGGAAGGGTATTTTAGAGTTAACAGAAAAAAT 2989782 28 100.0 32 NNNNNNNNNN ............................ CCTGCCCCGAACAATATGATGCTTTTTTTCAA 2989842 28 100.0 32 NNNNNNNNNN ............................ GATTTAAGAAAGTTTATAAGCAGTTTTAATAC 2989902 28 100.0 32 NNNNNNNNNN ............................ ACTGGTACCCGATTTTCAACGTGGGCATGTAT 2989962 28 100.0 32 NNNNNNNNNN ............................ TTTTAATGCACATGAAGGCCACTAATACAGAA 2990022 28 100.0 32 NNNNNNNNNN ............................ CTGAACAGGTAACTGCTGATCTACTTGATGCT 2990082 28 100.0 32 NNNNNNNNNN ............................ AACTTGCTCAATGATTTACGAAATCCAATTCA 2990142 28 100.0 32 NNNNNNNNNN ............................ AATTTTATGTAACTGCTTTTAAATCCCTTTCA 2990202 28 100.0 32 NNNNNNNNNN ............................ GATAACCCAAGCCAAGCCTATAAGTTTCAAAA 2990262 28 100.0 32 NNNNNNNNNN ............................ CCTGTGACAACTGGTGAGTTGGTCACGCTTGG 2990322 28 100.0 32 NNNNNNNNNN ............................ CCAATGGGCAACTTTGGAAACGCTACGCCACA 2990382 28 100.0 32 NNNNNNNNNN ............................ CCTTCACTCACAGCGGGAGTAAATGCCTATGC 2990442 28 100.0 32 NNNNNNNNNN ............................ ATTTCAGGCAATAAAAAACCCCGCTTTCGCAG 2990502 28 100.0 32 NNNNNNNNNN ............................ AAATACGATATCTATAAGGGCTATGATCATGA 2990562 28 100.0 32 NNNNNNNNNN ............................ TGGAAGTCATAGACCGTATGGTTGCGGCCCAT 2990622 28 100.0 32 NNNNNNNNNN ............................ AGATAGAAAAGACTAAAAGCAATGATGTAACT 2990682 28 100.0 32 NNNNNNNNNN ............................ AGATGCTGAGCAATTTCCTATTGTTGCATATT 2990742 28 100.0 32 NNNNNNNNNN ............................ TGATATTCACACATAATTTTTATGCTTATGCT 2990802 28 100.0 32 NNNNNNNNNN ............................ ACAAATTTTCTTGTAGCTGTATTGATGAGCAA 2990862 28 100.0 32 NNNNNNNNNN ............................ TCAACAACAAGATATTGAACAAGACTTTGGAA 2990922 28 100.0 32 NNNNNNNNNN ............................ CAAAACAACTTAAAGGCACCAGTTACCCCAAA 2990982 28 100.0 32 NNNNNNNNNN ............................ CACCCGTAGTTGAATCAACACGTAAAATATAT 2991042 28 100.0 32 NNNNNNNNNN ............................ ATTCTTGTAGTGAGATTGAATTGTATTACCAT 2991102 28 100.0 32 NNNNNNNNNN ............................ GTATGCAAATCTTGGAGGCTTAACCGCTTTGG 2991162 28 100.0 32 NNNNNNNNNN ............................ TATCCAATTACACGTTCAAAAACAGCGCAACA 2991222 28 100.0 32 NNNNNNNNNN ............................ CCAAAGGCGCTTACCCTCAAAGCCTTTGATGA 2991282 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 52 28 32 TTTCTAAATGGCGTATGCCGCCATGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.80,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [164,133] Score: 0/0.18 # # Final direction: R [0,1.05 Confidence: HIGH] >NC_011595 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1068202 28 100.0 32 NNNNNNNNNN ............................ TGTTGCGCTGTTTTTGAACGTGTAATTGGATA 1068262 28 100.0 32 NNNNNNNNNN ............................ CCAAAGCGGTTAAGCCTCCAAGATTTGCATAC 1068322 28 100.0 32 NNNNNNNNNN ............................ ATGGTAATACAATTCAATCTCACTACAAGAAT 1068382 28 100.0 32 NNNNNNNNNN ............................ ATATATTTTACGTGTTGATTCAACTACGGGTG 1068442 28 100.0 32 NNNNNNNNNN ............................ TTTGGGGTAACTGGTGCCTTTAAGTTGTTTTG 1068502 28 100.0 32 NNNNNNNNNN ............................ TTCCAAAGTCTTGTTCAATATCTTGTTGTTGA 1068562 28 100.0 32 NNNNNNNNNN ............................ TTGCTCATCAATACAGCTACAAGAAAATTTGT 1068622 28 100.0 32 NNNNNNNNNN ............................ AGCATAAGCATAAAAATTATGTGTGAATATCA 1068682 28 100.0 32 NNNNNNNNNN ............................ AATATGCAACAATAGGAAATTGCTCAGCATCT 1068742 28 100.0 32 NNNNNNNNNN ............................ AGTTACATCATTGCTTTTAGTCTTTTCTATCT 1068802 28 100.0 32 NNNNNNNNNN ............................ ATGGGCCGCAACCATACGGTCTATGACTTCCA 1068862 28 100.0 32 NNNNNNNNNN ............................ TCATGATCATAGCCCTTATAGATATCGTATTT 1068922 28 100.0 32 NNNNNNNNNN ............................ CTGCGAAAGCGGGGTTTTTTATTGCCTGAAAT 1068982 28 100.0 32 NNNNNNNNNN ............................ GCATAGGCATTTACTCCCGCTGTGAGTGAAGG 1069042 28 100.0 32 NNNNNNNNNN ............................ ATCTGCAAGACCACTGATAGTTGTTGAGAATC 1069102 28 100.0 32 NNNNNNNNNN ............................ TGTGGCGTAGCGTTTCCAAAGTTGCCCATTGG 1069162 28 100.0 32 NNNNNNNNNN ............................ CCAAGCGTGACCAACTCACCAGTTGTCACAGG 1069222 28 100.0 32 NNNNNNNNNN ............................ TTTTGAAACTTATAGGCTTGGCTTGGGTTATC 1069282 28 100.0 32 NNNNNNNNNN ............................ TGAAAGGGATTTAAAAGCAGTTACATAAAATT 1069342 28 100.0 32 NNNNNNNNNN ............................ TGAATTGGATTTCGTAAATCATTGAGCAAGTT 1069402 28 100.0 32 NNNNNNNNNN ............................ AGCATCAAGTAGATCAGCAGTTACCTGTTCAG 1069462 28 100.0 32 NNNNNNNNNN ............................ TTCTGTATTAGTGGCCTTCATGTGCATTAAAA 1069522 28 100.0 32 NNNNNNNNNN ............................ ATACATGCCCACGTTGAAAATCGGGTACCAGT 1069582 28 100.0 32 NNNNNNNNNN ............................ TTCTCATCGTGAAGGTTTTGCAAATATGCCTT 1069642 28 100.0 32 NNNNNNNNNN ............................ TGTCCGAAATTCAGATGGTGAAGTGACATATG 1069702 28 100.0 32 NNNNNNNNNN ............................ TTCAACCTACGCAAGTATTATGGGAACTATTT 1069762 28 100.0 33 NNNNNNNNNN ............................ GTCTTTATCAGTTACGATGGCATGAGTTTTTGT 1069823 28 100.0 32 NNNNNNNNNN ............................ ATAGCACGAGCAAGTTCTTGAGATGCCAAAAA 1069883 28 100.0 32 NNNNNNNNNN ............................ ATATCTCGCAGATTTGGACAAGGTCACGAATA 1069943 28 100.0 32 NNNNNNNNNN ............................ TTCAACTGTGTAACCAGATTTCGCTTTAAAAG 1070003 28 100.0 32 NNNNNNNNNN ............................ ATCAATGTAATGCTCAGGCGATGCCTTATCAT 1070063 28 100.0 32 NNNNNNNNNN ............................ TTGGACAAAGATTATGACTGAGAAAGACGAGA 1070123 28 100.0 32 NNNNNNNNNN ............................ TTGGATGTGCAATTTGGTCAAGATGTGGGGAG 1070183 28 100.0 32 NNNNNNNNNN ............................ CGAACACGACTTGAACCAAAGTTAGAAAAATA 1070243 28 100.0 32 NNNNNNNNNN ............................ CAACTAAAAGCTATTTATGGGGGTAAAAATTT 1070303 28 100.0 32 NNNNNNNNNN ............................ TGTCATTGGCCGGCCATTCACAACCCCGATAA 1070363 28 100.0 33 NNNNNNNNNN ............................ CCAAAAAATGAGGAAATTGGACAATATCCAACA 1070424 28 100.0 32 NNNNNNNNNN ............................ TGTTGAACGAGTTATTCATAAGTGCCCGAAAT 1070484 28 100.0 32 NNNNNNNNNN ............................ AGCGGAAATCTTTTCAAGTGCGTAGGGGATAA 1070544 28 100.0 32 NNNNNNNNNN ............................ TTCTCCAAGTAAAGAATAAAACAATATACCGC 1070604 28 100.0 32 NNNNNNNNNN ............................ TCAAGGCGATCCACCTCCCGTCACAGTCATTT 1070664 28 100.0 32 NNNNNNNNNN ...........T.C.............. TTTGCTAAAAGGATTTATGCTTTAAAATACTT 1070724 28 100.0 32 NNNNNNNNNN .......A.....C...T.......... GTTGGCGTACGGATAACGGAAGAAAGCATAAG 1070784 28 100.0 32 NNNNNNNNNN .......A.........T.......... AAATAACCACGGTTGTGGTAAGTCACTTTTAC 1070844 28 100.0 1 NNNNNNNNNN .......A.A.....T.T.......... NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 45 28 32 GTTCATGGCGGCATACGCCATTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.00,-6.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [80.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [133,164] Score: 0/0.18 # # Final direction: F [1.05,0 Confidence: HIGH] >NC_011653 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1182958 30 100.0 37 TGCTATATAA .............................. TATGTAGCTGCTTTATCCGTGCTTATACCAACTTTTG 1183025 30 100.0 37 CCAACTTTTG .............................. TTAATCCCCTGGATCAAGAACACTTTCTTTATATTCT 1183092 30 100.0 36 TTTATATTCT .............................. GCAATTTTACTACTTATTCTAATTTTAAAAACAAAG 1183158 30 100.0 37 AAAAACAAAG .............................. CGAATAGACTAAATGAATTATTGAAGCAAAACAACTT 1183225 30 100.0 37 AAAACAACTT .............................. AAATCCGCTCTCACTAACTATTAATGCAACAAAAATT 1183292 30 100.0 37 AACAAAAATT .............................. TAAAAATCGAAACAGATAGATGTTCCTATTCATTTAT 1183359 30 100.0 39 ATTCATTTAT .............................. AAGAAGTTGTGCGGTCATGTATTCTATTGTTCTTTCAAT 1183428 30 100.0 37 TTCTTTCAAT .............................. GCAAATCTGAGACAACTTCAGACCTGATAGCAGAAAT 1183495 30 100.0 36 TAGCAGAAAT .............................. AAGAAATTGGAAGAACTAAAAGGAGGTATAAAACAG 1183561 30 100.0 35 TATAAAACAG .............................. CGAACTTGAAAACAAAGTTTCAATAGAGCAAAAAG 1183626 30 100.0 37 GAGCAAAAAG .............................. TATAACCCATTAGAAACAACAGGCGATGAAAAAGAAA 1183693 30 100.0 36 GAAAAAGAAA .............................. TAGAAACAGATGGTACAATTAAACCAGCAGAATATA 1183759 30 100.0 37 GCAGAATATA .............................. CCGGATACACTTTAAGTTTCTCTGGCAAATATAAAGT 1183826 30 100.0 37 AATATAAAGT .............................. AAGGAAGTGTTGAAGTGGCAATTGAAGGAGTTTGCTG 1183893 30 100.0 36 GAGTTTGCTG .............................. TGACGAAGCGCCTGAAGCATACAAGGACATCATGTA 1183959 30 100.0 36 ACATCATGTA .............................. AATGGTTCTTCCGTAAAAGATAAATAGCCAACAAAA 1184025 30 100.0 35 GCCAACAAAA .............................. ATTTATGGAAACGGTTCCATATGGTATAGTTTGAG 1184090 30 100.0 37 ATAGTTTGAG .............................. AAGGAGGTAACATTATGGCACAGAACGTTGTGAATGC 1184157 30 100.0 37 TTGTGAATGC .............................. TAGTTCTTTCACTCAACTCCGCCCCGCGATATTGCTA 1184224 30 100.0 37 GATATTGCTA .............................. AAGTAACCCTTCAAGACACTTCCATCGTATATCCATG 1184291 30 100.0 37 TATATCCATG .............................. CACCACCAGAAGTTATTAATTTTACCCATGCATCAGC 1184358 30 100.0 ATGCATCAGC .............................. CATAGATTAC ========== ====== ====== ====== ========== ============================== 22 30 36 GTTTCAATTCCTACAAGGTAAGGTACAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.60,-2.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [249,287] Score: 0/0.18 # # Final direction: R [0,4.87 Confidence: HIGH] >NC_011653 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1260736 30 100.0 36 GGTAAAGAAT .............................. AGACACATCTTCATCTCCTTTGTTATTTTTAAAAGA 1260802 30 100.0 36 TTTTAAAAGA .............................. CTCGTTTCTTTTACCGAGCTTGGTTGCCACATCTGA 1260868 30 100.0 37 CCACATCTGA .............................. TTAGATACTTTTTTTGATTTTGAGGGCAATTTTTGGA 1260935 30 100.0 36 AATTTTTGGA .............................. ATTCAAATTCACTTATCCTTTTTATCCAGAAGAAGT 1261001 30 100.0 37 CAGAAGAAGT .............................. TCTTATCAGAATTACCAACCAAATTCAGCAATTCCTT 1261068 30 100.0 38 GCAATTCCTT .............................. TCTTCATGTCATAGTCATTACTCAGAGACCTCAAAATG 1261136 30 100.0 36 CCTCAAAATG .............................. CAAACAAAGATTACGACGTCAGCGTTAGATTCGACC 1261202 30 100.0 37 AGATTCGACC .............................. TTTAGTTATGCTATTTAAAAAGTAAAGAGGTGATATA 1261269 30 100.0 36 AGGTGATATA .............................. TATCAATTTCTGTTGTCCCTCTATTGCCTGTTATAT 1261335 30 100.0 37 CCTGTTATAT .............................. AAGGTGGTGGCAGCAATGGATGATATCGCAAAGCAAG 1261402 30 100.0 36 GCAAAGCAAG .............................. TCAACTTCTCATTTACTATTGCTTCTACTATTTCGT 1261468 30 100.0 36 ACTATTTCGT .............................. GTATGCCATTGCTCTTCCAGAGAGTGGTTTAATTTT 1261534 30 100.0 35 GTTTAATTTT .............................. AATGAATATAAACATAGATGGATTTGGAATAAAAA 1261599 30 100.0 38 GGAATAAAAA .............................. AAGCGATTTGCTTTATTTTGGCAATGCATACGTTTATT 1261667 30 100.0 36 TACGTTTATT .............................. TGTCAAAGGAAACAACAGCAGATGAACCAGAAGAAT 1261733 30 100.0 35 CCAGAAGAAT .............................. TGGGAGAATGGCAAAAAGAGGAAGAAAGTTGAAGT 1261798 30 100.0 36 AAGTTGAAGT .............................. TTAAACATTATCACACCTCCTTTCTTTACCAACCTT 1261864 30 100.0 39 TACCAACCTT .............................. AAGTAATAGTGTGATAATGATTGATGTTGCTACACCTGA 1261933 30 100.0 36 CTACACCTGA .............................. CTATCATATCAGCTGGAAATGGGGTTGCAAGAGCAA 1261999 30 100.0 35 GCAAGAGCAA .............................. CCGGAGGTGACTTCATATATGAGAACTATTGAGTA 1262064 30 100.0 37 CTATTGAGTA .............................. GATTAATCACCGCAACGTTCGAGATAACAGGAGTAAA 1262131 30 100.0 35 CAGGAGTAAA .............................. GCAATGGGCTTAGCCCGTTGCCCTTTTTAAAACAA 1262196 30 100.0 36 TTTAAAACAA .............................. AATCACCGCCAATAATTTTGGTTGGTGGGAAATACA 1262262 30 100.0 36 GGGAAATACA .............................. TTTCGGAACCTTTTTGGTTCCAAACTAACAATCATG 1262328 30 100.0 36 AACAATCATG .............................. CTATTTCGTTGTTGCCTCGATTAACAAGGTAACATT 1262394 30 100.0 37 AGGTAACATT .............................. TGTTTAAGCAAGATAGGCAAGATGTAGAGTTGTTAGA 1262461 30 100.0 36 AGTTGTTAGA .............................. TCTTGTTCAAGTTTCACAATGATGTGGTAAATGTAT 1262527 30 100.0 35 GTAAATGTAT .............................. ATAATTAGTATATTTGAATGGGCAATCGACTTCTT 1262592 30 100.0 35 TCGACTTCTT .............................. TTTCAAGAAAATTCTAGATATAACTCCAGGTTGCC 1262657 30 100.0 CCAGGTTGCC .............................. CCGTTTAACA ========== ====== ====== ====== ========== ============================== 30 30 36 GTTTCAATCCCTAATAGGTATGCTAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [311,156] Score: 0/0.18 # # Final direction: R [0,4.87 Confidence: HIGH] >NC_011653 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1332343 30 96.7 36 CACATTTTTA ..........T................... GATACATAGTCAAAACAAAACATGTACTACATATAT 1332409 30 100.0 42 CTACATATAT .............................. TTGAACAATTTGATGGTTTGTCACTTAGTTCTATTAATCGTC 1332481 30 100.0 46 ATTAATCGTC .............................. ACGAATTATAGAACTAGAAGAATATAGATTGGGGATTGAAGCAGAA 1332557 30 100.0 36 TGAAGCAGAA .............................. AACATGATGGCATATTACTCAAAAGAGTTACAGGTG 1332623 30 100.0 40 GTTACAGGTG .............................. GGGAATCAGGCGGGGGATATAGCAATACAGGCGATGCCCG 1332693 30 100.0 37 GCGATGCCCG .............................. GGTATGTAACATTAAATAGTATTGGTGTAGATTGGAT 1332760 30 100.0 36 TAGATTGGAT .............................. GATATTGATTTTTTTAACGACGAGGAATTAAAAACA 1332826 30 100.0 39 ATTAAAAACA .............................. GGCAAGAGATTACTACATTGAATTCGCAGAACCAATCTA 1332895 30 96.7 34 AACCAATCTA ...........A.................. AAAAAGGAGTTAATAAGAACAAGGCTCGGCATTG 1332959 30 96.7 35 CTCGGCATTG ...........A.................. TGATGGTGCGCGCGCAGGCATTGAGGCGAAGGCTA 1333024 30 96.7 GCGAAGGCTA ...........A.................. CCGTAATAAT ========== ====== ====== ====== ========== ============================== 11 30 38 GTTTTCATTCCTCATAGGTAGATTCTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [414,669] Score: 0/0.18 # # Final direction: R [0,0.78 Confidence: HIGH] >NC_011653 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1959890 30 100.0 36 NNNNNNNNNN T.A..................A...A.... GACTAAAGGAGTGATGAGTATGATTGAGTTAATTGT 1959956 30 100.0 36 NNNNNNNNNN .............................. AAGATTTACTACCCTAACACCTAAACCTAATGCACG 1960022 30 100.0 39 NNNNNNNNNN .............................. ACAAGAACCGCCTTCTATAAGTATTGATGCCAAACCAAA 1960091 30 100.0 39 NNNNNNNNNN .............................. TTTTTTGTCCCAGCACAATACTGCCGTCGTTTCTGATTT 1960160 30 100.0 37 NNNNNNNNNN G............................. AATACTCGATATCTTTTTCTCCATTTACATATAGTCG 1960227 30 100.0 36 NNNNNNNNNN G............................. GCTTGAAACGTTAAAGGTAGAACGTGAACAAAATTT 1960293 30 100.0 38 NNNNNNNNNN .............................. ATTATTTCGAATGGGAATTTGAACAGCTAAACAACAGT 1960361 30 100.0 36 NNNNNNNNNN .............................. TAAAAGACAGCGTCTATGAGCAAGTTATAACGCCGA 1960427 30 100.0 36 NNNNNNNNNN .............................. TCTTTCCAATCCCAATCTTGTAACGGCCAATATTCT 1960493 30 100.0 38 NNNNNNNNNN .............................. GAAAAAGAGTCTGATGGAGATGATAGCGAGGAAACTCA 1960561 30 100.0 37 NNNNNNNNNN .............................. TATTATAACCTTTTTCTTTTGCTATTTCAATATATTT 1960628 30 100.0 37 NNNNNNNNNN .............................. TAGTTTCCACACTTGATTCAGTAGCACAGAAATTAAA 1960695 30 100.0 37 NNNNNNNNNN .............................. TAGTTTCCACACTTGATTCAGTAGCACAGAAATTAAA 1960762 30 100.0 37 NNNNNNNNNN .............................. TATATTCTTCGGTAATTTCCCTTTTGATTTTGCAAAT 1960829 30 100.0 37 NNNNNNNNNN .............................. GCATATGACAGCAGCACGACACAAGGAGGGGAAGGTA 1960896 30 100.0 35 NNNNNNNNNN .............................. TCTAATCCATGAGTTGCATCTATTTGGTCTACCAT 1960961 30 100.0 36 NNNNNNNNNN .............................. GGAAAGAGAGGTGGTATGTTGTTACTGAAAGAAAGT 1961027 30 100.0 36 NNNNNNNNNN .............................. TTACGTAAAGCCGTTTCATGTTTAATCTTTCTACCA 1961093 30 100.0 37 NNNNNNNNNN .............................. TTGTATCAAGACAGACAGTTGCGGAAGCGTTAGGAAT 1961160 30 100.0 37 NNNNNNNNNN .............................. CAAATTTGGTTTGTGGCGTCACCAAAAAGTCTAGCGC 1961227 30 100.0 37 NNNNNNNNNN .............................. AAGTCTTCTGCTGCAGATTTATACTGGTTGAAATGCA 1961294 30 100.0 38 NNNNNNNNNN .............................. TAGAGCAAGTCAGAATATAGGGAAGGCTAAAGAAATAC 1961362 30 100.0 36 NNNNNNNNNN .............................. TCGTGGAAACTTTACAGGAAATGTTTTATTCATAAA 1961428 30 100.0 36 NNNNNNNNNN .............................. CTTCATAGTCTTCCAAATCTTGTGTAAAACTGTTGC 1961494 30 100.0 36 NNNNNNNNNN .............................. TTTTTTATCACTCATACTTACACCTCCTTTTTTATT 1961560 30 100.0 37 NNNNNNNNNN .............................. TAGCTTCAATGCTAAAACTTTTGTTTTGCAAATCTAT 1961627 30 100.0 36 NNNNNNNNNN .............................. TCGTTTCTTTCCACAGTCCTTGCCAATCTAATGCGT 1961693 30 100.0 35 NNNNNNNNNN .............................. GCACTTCATCGAATGGTTCTTTTATTCCTAAAAGT 1961758 30 100.0 36 NNNNNNNNNN .............................. TTACAATAAACGATGATAAATTGCATTATTTAGCTG 1961824 30 100.0 37 NNNNNNNNNN .............................. ATAAGGCAGAAGACAAAACACTGCTTGTAAACAGAGT 1961891 30 100.0 36 NNNNNNNNNN .............................. GTTGGAAGTGGCTTGTGGAGATATATCAAATTCCAA 1961957 30 100.0 35 NNNNNNNNNN .............................. GAGATAATAGCAACAGATTATTCACTTATATTTGG 1962022 30 100.0 36 NNNNNNNNNN .............................. AGCTTCAACCGTTAATCTAAACGATGCAACTTATTA 1962088 30 100.0 37 NNNNNNNNNN .............................. GTATCTCTGTCAACGCGCATTCAGATACCTCAGGAAA 1962155 30 100.0 38 NNNNNNNNNN .............................. TGTGCGATCTCCGTTAAAATACTTCTTAATAAAAGATC 1962223 30 100.0 38 NNNNNNNNNN .............................. TAAATATAAGCGGAAGGTGCGAGAGGGTCTTTGAAAAG 1962291 30 100.0 38 NNNNNNNNNN .............................. TCGCACCTTCCGCTTATATTTATACCACAGTCTTCCCT 1962359 30 100.0 36 NNNNNNNNNN .............................. TTGGAACCAGAAAGAGGAATACTTAGAGTTTATAGA 1962425 30 100.0 37 NNNNNNNNNN .............................. GCGAGACAATTGTATAATTCTTCGTCGATTGGTTCGG 1962492 30 100.0 38 NNNNNNNNNN .............................. TTGGGTTTTTTAGATTCAAAGTTTGATATTGAAAATAT 1962560 30 100.0 35 NNNNNNNNNN .............................. GTTCTTTCACTCAACTCCACCACGAGATATTGCTA 1962625 30 100.0 35 NNNNNNNNNN .............................. TTAGTACAATTGTTTAGTATCTTTATTTTATGTCT 1962690 30 100.0 38 NNNNNNNNNN .............................. GAACTCTTCCCACTCCGTAATAATAACACCGTCATCTT 1962758 30 100.0 36 NNNNNNNNNN .............................. TACAAAGGAGGGGATTTTTATGGTTAAGTTTAAGGG 1962824 30 100.0 37 NNNNNNNNNN .............................. AAAACATAACTTATTTTATTAAAAAGTATGCAGAACT 1962891 30 100.0 36 NNNNNNNNNN .............................. CGTGTACTATTGCGATACAGATTCTATCATTACAGA 1962957 30 100.0 38 NNNNNNNNNN .............................. GTAACTCGTGGAAACTTTACAGATGTTTTATTCATAGA 1963025 30 100.0 36 NNNNNNNNNN .............................. GGATTGTGCTCGAAGGCAGTCGGTTCAGTAAAGCTG 1963091 30 100.0 37 NNNNNNNNNN .............................. ATGAGTTCCAAATTTTTCTTGCTCTTGCACAAAAATA 1963158 30 100.0 36 NNNNNNNNNN .............................. AGAAACACCAGATAAATTTAAAGTAACAAAAGTAGA 1963224 30 100.0 35 NNNNNNNNNN .............................. TTAGTTATAGCTTTATTTATTAGTAAGAAAAGCAA 1963289 30 100.0 35 NNNNNNNNNN .............................. CGGTAATCAGGCGTTGCTGTTTCTGTGTAATACCC 1963354 30 100.0 39 NNNNNNNNNN .............................. CATTACTAATAATAGTGCCAACCCGATTGTAGTAAGAGT 1963423 30 100.0 36 NNNNNNNNNN .............................. AAAGTTCGGCATTCGTAAAGGATTTCCAAAATATTT 1963489 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 55 30 36 ATTTCAATTCCTACAAGGTAAGGTACAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.60,-2.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [76.7-78.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [163,8] Score: 0.18/0.18 # # Final direction: R [0.18,5.28 Confidence: HIGH] >NC_011653 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 309784 30 100.0 39 GATAGTATAG .............................. CATATTTTTTAGATAAAATATCACGCATTAAGTCCCCCA 309853 30 100.0 37 AAGTCCCCCA .............................. TTGAATTCCTCGACACCCTCCTTTAAGATTTTCATTT 309920 30 100.0 44 ATTTTCATTT .............................. TATACTTCTCTATGTTGTCATTATAGTTATAGCAATATCTCGTG 309994 30 100.0 42 ATATCTCGTG .............................. ATTCAAATTCTTTCTTTAACATAATAACACCTCCATACATTT 310066 30 100.0 47 CCATACATTT .............................. CTTAATTCTCAGCTTCGTGTTATATATTTCAATTTTCTTTTCCATAA 310143 30 100.0 34 TTTTCCATAA .............................. ATAATAGGAGTAATAATATTAATCTCAAAATCTG 310207 30 100.0 38 TCAAAATCTG .............................. TGTATAATGTAATTTCCTTTTTTAAAAACATAATTTCC 310275 30 100.0 44 CATAATTTCC .............................. GCTTTTCGATGAACTTTTCGAGTTGTTCGTAGCTGTGTATAATC 310349 30 100.0 38 GTGTATAATC .............................. CAATCACATCATAAATTTCACCATGGGTCTTAATTACT 310417 30 100.0 CTTAATTACT .............................. TCGATTACTT ========== ====== ====== ====== ========== ============================== 10 30 40 GTTTAGAATCTACCTATGAGGAATGAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.00,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [71.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [619,1884] Score: 0.18/0.18 # # Final direction: F [0.64,0.18 Confidence: MEDIUM] >NC_011653 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 310593 30 100.0 38 TATGGATTTT .............................. TTCATTTTTGTATTATACATTTCAATTTCCTTTTTTAA 310661 30 100.0 41 CCTTTTTTAA .............................. ATCACAGAATAATCTGTTGTCGATCGCCACTATTTTAAATC 310732 30 100.0 42 ATTTTAAATC .............................. GTGAATAAGTGTTTCTTCAAACTTTTCAAGACTAATGGTTTC 310804 30 100.0 42 TAATGGTTTC .............................. CAAAAATGGCACTTGCAACACTTTCTCCTTTTAGTTTCCTCA 310876 30 100.0 41 AGTTTCCTCA .............................. CGCGTTTGCCGTACTCGTCTTTGTATACACCTAATCTATAA 310947 30 100.0 41 TAATCTATAA .............................. TGACTTCAGGTTCAAAGGCTTCCATTAAATCGTATATAATT 311018 30 100.0 41 GTATATAATT .............................. GTACCTCCACAAGTGCACCATTCTCAATCTTGAAACTCCTC 311089 30 100.0 37 GAAACTCCTC .............................. AACTTTTGGAATGTTACGTTGTATGGGACTGATAAAG 311156 30 100.0 42 ACTGATAAAG .............................. CTCCCTTCATCAACTAAGTAAAAATAATTATCATTATCTAAA 311228 30 100.0 40 ATTATCTAAA .............................. CATGATTTCGAAGTTTCAAAGTACCGCCTTCAAACCCAAA 311298 30 100.0 36 CAAACCCAAA .............................. ACGTATGTACATAGAAGATGAGTTTATAGAAACAGT 311364 30 100.0 37 TAGAAACAGT .............................. TTTTTGACGATTCCTCTAGCATTTTGTTGAATTCTTC 311431 30 100.0 43 TGAATTCTTC .............................. CCGTCGTAAAAAAATCATCTGCTTTTACTACTTTTACACCATG 311504 30 100.0 37 TTACACCATG .............................. ACAAATTCATATGTATCCATAATTACACCTTCACTTA 311571 30 100.0 38 CCTTCACTTA .............................. ATGTTTCCGGCACTGGCTCTATGAGTCAACTAGGAAAC 311639 30 100.0 40 ACTAGGAAAC .............................. GGACTAGTTACTGCTCCTTGTGGCAAACGTCCTTTATATG 311709 30 100.0 43 CCTTTATATG .............................. GATTCTAAAACATAGTCGCTTTTTGTTGAACCAAAGAAATCGT 311782 30 100.0 39 AAGAAATCGT .............................. GTACGAAACTGTCTCCAATTTGCAACGGGGATAATTGTT 311851 30 93.3 GATAATTGTT ............................TT GCATAATG ========== ====== ====== ====== ========== ============================== 19 30 39 GTTTAGAATCTACCTATGAGGAATGAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.00,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1428,450] Score: 0.18/0.18 # # Final direction: F [0.96,0.27 Confidence: MEDIUM] >NC_011653 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 326883 30 100.0 37 AAATAATACA .............................. ATATCAAATTCGCCAAGCCGCTGTTCCCAAATATTCC 326950 30 100.0 45 CAAATATTCC .............................. ATGATGACTATTAGTGCATACCTGATTATATTGGCGTCTATCTAC 327025 30 100.0 39 GTCTATCTAC .............................. GAAACATTAGGTAATCGACAAGATGAACTGTTTATGGAA 327094 30 100.0 43 GTTTATGGAA .............................. TACAAAGTTAGAATTTGACAAAAAAGGAATAAAAGAATTTGAA 327167 30 100.0 40 AGAATTTGAA .............................. ACCTGAAAAGACACAGGAGGGAAAAATTCCTCATGAGCCA 327237 30 100.0 40 TCATGAGCCA .............................. TGAGAATTGGTGTTCGAAGATATTTTAGCTATGAATATAC 327307 30 100.0 39 ATGAATATAC .............................. TCAAAAATTTTGAAAAACTGATGAATGAAGTAATTCAAC 327376 30 100.0 36 GTAATTCAAC .............................. TATTCTAATTATCCAGGAGCTCGAGTTACAATTCAC 327442 30 100.0 40 TACAATTCAC .............................. TTCGACTTCGACTCCAAAAACCTTATTCGGATCTTTATTT 327512 30 100.0 40 ATCTTTATTT .............................. CTCATTAAACAAAACAAAAAGAAAAAACTTACAAAAGGAA 327582 30 100.0 43 ACAAAAGGAA .............................. TAGGGCTCCCCGTGTGGGGGATGACCGAAAGGGACCTGGCAAT 327655 30 100.0 39 ACCTGGCAAT .............................. GCAAAAATGGGGGCCAATCACAGGCCCCTATTTTGTTGC 327724 30 100.0 34 ATTTTGTTGC .............................. AAACTAAAAATGGGCTCAAACGCCGCTTTTACGA 327788 30 100.0 42 GCTTTTACGA .............................. AGTTTTTGGAAAAATAGTGCATGAGATGATAGCTAAACAATT 327860 30 100.0 42 CTAAACAATT .............................. TCTTGTTCTGGTTGAAGGAACACCGCAGACAAGAAAACATCA 327932 30 100.0 38 GAAAACATCA .............................. ATTTCAATGCCTATCCATCTTCTACCTAATTGTTCTGC 328000 30 100.0 35 ATTGTTCTGC .............................. GAAATATGCAGAAATTGAGAAAGTAGATTGGAAAC 328065 30 100.0 43 GATTGGAAAC .............................. GAAAAATTCCTCATGAGCCACAGTATCCTGTGTCTGAGTAGGG 328138 30 100.0 38 CTGAGTAGGG .............................. ATTTCAATGCCTATCCATCTTCTACCTAATTGTTCTGC 328206 30 100.0 ATTGTTCTGC .............................. CTAAACATAC ========== ====== ====== ====== ========== ============================== 20 30 39 GTTTTCATTCCTCATAGGTAGATTCTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [91.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [212,2002] Score: 0.18/0.18 # # Final direction: R [0.27,0.55 Confidence: MEDIUM] >NC_011653 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 328568 30 100.0 35 TAGATGAATA .............................. GGAAACTATAGAAGAAAAGTTTGTGGTTATAAAAC 328633 30 100.0 37 GTTATAAAAC .............................. ATAATAATAATAGAAAACAGATTATTCTGTGATTTTC 328700 30 100.0 43 TGTGATTTTC .............................. CAAAACTCCTCGGCAACAAAATTGTGTTTTCACTTGGAACAAC 328773 30 100.0 41 TTGGAACAAC .............................. ATTTGAATATGATGTAGGAATCGAAAAAGGATTAATCACCG 328844 30 100.0 38 TTAATCACCG .............................. ATTCTTCTGTGATTTTCCAATCGCGGATTTTGGTCACG 328912 30 100.0 41 TTTGGTCACG .............................. GAGGAATTCAAAAATTTTCGAAATTTCGAAGACCTCGAACT 328983 30 100.0 36 ACCTCGAACT .............................. TTGAAAAGGGGGTGATTACCGCAACGTTCGAGATAA 329049 30 100.0 44 TTCGAGATAA .............................. TCGGTGGGTTTAGAAATGCCCAATGTGGGCAAAAACAAATAAGG 329123 30 100.0 ACAAATAAGG .............................. GTATAACACA ========== ====== ====== ====== ========== ============================== 9 30 39 GTTTTCATTCCTCATAGGTAGATTCTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [1897,1085] Score: 0/0.18 # # Final direction: R [0,0.37 Confidence: MEDIUM] >NC_011653 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 368612 30 100.0 32 ATAGTTATAG .............................. ACAAGATCATCATCAATATCAACTTTCTTTAA 368674 30 100.0 36 CTTTCTTTAA .............................. TATGCCAATTTTCATCTTTCCGCCCCCTTTTCATTC 368740 30 100.0 41 CTTTTCATTC .............................. CTCCAAGATATATTTGTTTCATTTTATCACCTCATTATAAA 368811 30 100.0 43 TCATTATAAA .............................. CCAATTCGAGGTATTCAAAAAAATCACAATTTTTGAACTCCTC 368884 30 100.0 46 TGAACTCCTC .............................. ACTAGTATTCTGAACCTTTTTGTTACTATACCTTTCATGTTTTCTC 368960 30 100.0 39 ATGTTTTCTC .............................. TGAAAGAACTATTGTTCTTTTATCTAGGAGTTTTGCAAA 369029 30 100.0 44 GTTTTGCAAA .............................. TAGTAGACTGTCATTCCGTCTACTTGTTCTTGATGAATATAAGA 369103 30 100.0 43 GAATATAAGA .............................. GATTAGTGTTAAAGTGTAAATATTATTATCGCACAAATTATAT 369176 30 100.0 45 CAAATTATAT .............................. TAGAAAAGCACCACCTACAAGCAACCAAAAGCCAAATTTGTTTCC 369251 30 100.0 40 ATTTGTTTCC .............................. AGCTTCCGGGTCTGAGTTGTAGTCTTGGATAAATTGTTTA 369321 30 100.0 37 AAATTGTTTA .............................. TCAATATACTTCTCTATGTTGTCGTCATTATAGTTAT 369388 30 100.0 40 TTATAGTTAT .............................. TCTTTTATATTCTCTTCTAAAATTTTCATCTTTGTGTTAA 369458 30 100.0 46 TTTGTGTTAA .............................. TTTGCAAAGAGATCGCCAGCATCTCCAAAGCTGGCAACCACGACCC 369534 30 100.0 46 ACCACGACCC .............................. ATATATTGTAGTAATGGAAACACAGATTGTCCTTCAAAAAACGATA 369610 30 100.0 41 AAAAACGATA .............................. TGTGTCATACAATCTGGAAACCATCACATACATAATTACAC 369681 30 100.0 39 ATAATTACAC .............................. GAAACCATCACATACATAATCACACCATCCTTTCTTTTG 369750 30 100.0 36 CTTTCTTTTG .............................. CGGATTGTCGCAGAACAAAAGTGTTGGTAAAGTAAT 369816 30 100.0 38 GTAAAGTAAT .............................. TTTTGAATCTCTTTGTCAGTTTACCTTTCATGTTTTCT 369884 30 100.0 42 CATGTTTTCT .............................. ACCATAATACCCCTCCTTATTTTATTTTTTCGGAACCTTTTA 369956 30 100.0 43 GAACCTTTTA .............................. ATACTTGCATCTCTCTGTTTCGATTGTTACTTGTAAATAATAT 370029 30 100.0 41 TAAATAATAT .............................. GGCTCATTTTTGTGTTACGCAACGAAAATGTAGTTGTCACC 370100 30 100.0 42 AGTTGTCACC .............................. CACTCAGCCTCCGGGTCTGTGTTGTAATCTTGAATAAATTTT 370172 30 100.0 41 AATAAATTTT .............................. GAATTCAATTGTTTTGTTTCCAATTTTTGCAAAGAGATCGC 370243 30 100.0 39 AAGAGATCGC .............................. CATTTATTTCATGGCATATTTTCGATGAAATATATAACA 370312 30 100.0 43 ATATATAACA .............................. CATTATATATGTGTGAAATATGCTGAGCGTTACCATTAATTCC 370385 30 100.0 43 CATTAATTCC .............................. TCCAAGTTCGAGGTCTTCAAAATCTCTGAATTCCTTGAACTCC 370458 30 100.0 CTTGAACTCC .............................. AAGTTTTCTT ========== ====== ====== ====== ========== ============================== 27 30 41 GTTTAGAATCTACCTATGAGGAATGAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.00,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [1183,1515] Score: 0/0.18 # # Final direction: F [0.37,0 Confidence: MEDIUM] >NC_011653 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 370605 30 100.0 35 AGTTACAATT .............................. TTTTTGTTCCATCCTTATGTAAAATTTCATACTTC 370670 30 100.0 39 TTCATACTTC .............................. AAAAAAAGCGGTGGGTCAAAACCCACCGCTTATTAAAAA 370739 30 100.0 43 TTATTAAAAA .............................. TTCTCTTCTTCTTCTTGCCTTGTCAACATATCTAATTTTTCTT 370812 30 100.0 34 AATTTTTCTT .............................. AGTCTTGCATGGCTTTTCGCAATTGTTCTACGAC 370876 30 100.0 36 GTTCTACGAC .............................. TAAGCTGAATAAGCCTACTTTTGTCATTGTCCTATT 370942 30 100.0 39 TTGTCCTATT .............................. TTATTCCATAGTCTTCCGATACTGTATCGATACTGTATC 371011 30 100.0 40 ATACTGTATC .............................. CTGCATTCTGTACTAAACCTATAAGTTCAAAAATAGACGT 371081 30 100.0 AAATAGACGT .............................. AACTGTTTTC ========== ====== ====== ====== ========== ============================== 8 30 38 GTTTAGAATCTACCTATGAGGAATGAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.00,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [3176,892] Score: 0.18/0.18 # # Final direction: F [0.82,0 Confidence: HIGH] >NC_011653 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 499354 30 100.0 38 CCTTTTTTGT .............................. CTTTATTAAATGCATTACCTTACATAAAAGTTAAAAAG 499422 30 100.0 45 AGTTAAAAAG .............................. TCCATTCTTACAATTGTGTTAAATATCACTGAGGAACCCGCATAC 499497 30 100.0 44 ACCCGCATAC .............................. TATAGTTACAAAAGACGAAATATTTGTTGTTCCATGCAACTATT 499571 30 100.0 37 TGCAACTATT .............................. GAATACAAACCATCAATCTGGACAGACGCATACATTC 499638 30 100.0 39 GCATACATTC .............................. TCTTTTAAACGATTATACAGTTCCTTGCCGATAGGATGT 499707 30 100.0 42 GATAGGATGT .............................. GGTTATATACAAAATAAAGGGCCCTGGAGCCCTTTATAGTAA 499779 30 100.0 39 TTTATAGTAA .............................. TGTCTGAGTAGGGAAGGGAGATGACCAAAAGAACCTTGG 499848 30 100.0 42 AGAACCTTGG .............................. CTGGACTGATGGCTGGAGAAACGAATTTTACGAGGCTGCAAA 499920 30 100.0 42 AGGCTGCAAA .............................. GGACCTTTTTTACATAATTATATCACATTTTGATTTAAATAA 499992 30 100.0 38 ATTTAAATAA .............................. TGGCAACTATTAAGCGAGTTTGGAGAAATAGGAAATGA 500060 30 100.0 42 TAGGAAATGA .............................. GCCTGTAATTTGTCCTATAACATGTCTTGTGCGAATTGGTGT 500132 30 100.0 44 GAATTGGTGT .............................. ATATTGAATTCAAAATAGCGCTTTTTTCGGCTTCTGACACTGTT 500206 30 100.0 44 TGACACTGTT .............................. AAAAGTGAATAGGTAGGTGGCGAAAGTAGGGCGCCTGAGGAGGA 500280 30 100.0 43 CTGAGGAGGA .............................. ATTTAAGAGATGCAGTTAAAGATTTTAATTTGAACAAGTGGAT 500353 30 100.0 43 ACAAGTGGAT .............................. CAGTATATGAAGCTATTGCAAGAAAAAGAGATAAGCAAACAAT 500426 30 100.0 39 AGCAAACAAT .............................. GGATATTATGATGTTAGTAAAAAGATTTGATTTAGTCAA 500495 30 100.0 46 ATTTAGTCAA .............................. CCGAGTTATTCCAAAATTATTATTTTGGGGCACATTGGAAACATTA 500571 30 100.0 41 GGAAACATTA .............................. GTTTTTCAGAGTAGGTATAATGGCTCCTTAAATAGGTTTTA 500642 30 100.0 39 ATAGGTTTTA .............................. CAAAATGGCGAACATCATTAGTTGTAAGAGAATGGAGTT 500711 30 100.0 44 GAATGGAGTT .............................. AATAGACATCGTTACGATGGAAAATTTACCACAAGCTATTGGTT 500785 30 100.0 43 GCTATTGGTT .............................. TCCTTTTTTAGATGCAACAGCTTTTATGAGATATTATTATTTA 500858 30 100.0 39 TTATTATTTA .............................. CATGGTTATAAATTTAAGTATTTTTGGGTTAAGGAGTTG 500927 30 100.0 40 TAAGGAGTTG .............................. TTATATGCAAAACGTGGCAGAAACACAATTGTGTTTACTC 500997 30 100.0 38 GTGTTTACTC .............................. AAGAATTACTATATAGGCAAAAGAATAAGTATTAATTC 501065 30 100.0 43 GTATTAATTC .............................. TGAATTTATTGAATACACGGGTATAATTCAAGATGTAATTTTC 501138 30 100.0 38 TGTAATTTTC .............................. AACGTTCGAAGTAACAGGATTAGACAAAATTACCAAGG 501206 30 100.0 43 ATTACCAAGG .............................. CAATTATGGTGTCAGTTACTACATTGTATAACACGAAAATGAA 501279 30 100.0 41 CGAAAATGAA .............................. TATGAAACTAACCAAGAGGACGGGAGCGGGCGAGAAACAAA 501350 30 100.0 44 GAGAAACAAA .............................. TGAGAAATATATCGAACAATTTGTAAAAGATTACAACTCAGACC 501424 30 100.0 36 AACTCAGACC .............................. TTTTTAAAAGAAGCAGAGGACTATCTAGAAATAACA 501490 30 100.0 38 AGAAATAACA .............................. TTACTAGAGCAGTTTGAGGGGTTCATTCAAGAAGTTCT 501558 30 100.0 40 AAGAAGTTCT .............................. ACCTGTTTGCCAAAATAAGAAACAGAAAAACAATTGAATT 501628 30 100.0 CAATTGAATT .............................. TATAACTATT ========== ====== ====== ====== ========== ============================== 33 30 41 GTTTTCATTCCTCATAGGTAGATTCTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [1213,2493] Score: 0.18/0.18 # # Final direction: R [0,0.82 Confidence: HIGH] >NC_011653 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 371149 30 100.0 42 TCATCAGACG .............................. GCCAGAACTAAGTTTTTGACGTTCTCCCAGGGAGCCAACCAT 371221 30 100.0 43 AGCCAACCAT .............................. ACTTTATAAGATTCATAAATCTTTTTACTCATAATTTCTCCTC 371294 30 100.0 41 ATTTCTCCTC .............................. GAGGTACTCCTATAGTGATTCCAAGAAGAGGCAAAACAACA 371365 30 100.0 38 CAAAACAACA .............................. ACTAGCAAAGCCAAAACGCCAGTCGAAATTTAGAAAAA 371433 30 100.0 41 TTTAGAAAAA .............................. GAGGTACTCCTATAGTGATTCCAAGAAGAGGCAAAACAACA 371504 30 100.0 38 CAAAACAACA .............................. ACTAGCAAAGCCAAAACGCCAGTCGAAATTTAGAAAAA 371572 30 100.0 45 TTTAGAAAAA .............................. TTGGTCGGATCCAAAACAAAAATCTTTCCCTTTCGACATTTTTTT 371647 30 100.0 43 ACATTTTTTT .............................. TCATCATCTGCGATTATCGCTAGAACTAAATTCCTTATGCACT 371720 30 100.0 40 CTTATGCACT .............................. GTCATCATCTGCGATTATTGCCAAAACTAGGTTCTGGATA 371790 30 100.0 GTTCTGGATA .............................. TGCATAGTCCA ========== ====== ====== ====== ========== ============================== 10 30 41 GTTTAGAATCTACCTATGAGGAATGAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.00,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [3720,183] Score: 0.18/0.18 # # Final direction: F [0.55,0.27 Confidence: MEDIUM] >NC_011653 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 752274 30 100.0 35 AAGAGGACAT .............................. TGAACCTGTGTTATATGCCCAACTCACTGGTAAAT 752339 30 100.0 44 ACTGGTAAAT .............................. ATGCAAATGAGAAATATTAAAAAAGAAATTGAAAAGAAGTATGG 752413 30 100.0 41 AGAAGTATGG .............................. CGCAACAACAAGCAATATTGTGGGCAAGGATGGAAGAACAC 752484 30 96.7 39 GGAAGAACAC ....................T......... GAAGGTATGTTAAAGTTACATGATAAATTACAAAACACA 752553 30 100.0 39 ACAAAACACA .............................. TGTTTTTTCTTCTCATGTGCTATTCCTTCTAATAGTGGT 752622 30 100.0 45 TAATAGTGGT .............................. GTGTTTTATGTCTCTTGCTGGATCATTGAATTCCTCGGTGTTTTC 752697 30 100.0 47 CGGTGTTTTC .............................. AAGTGAATATTACCAGGGTTCGAAGCGGGCTCCTGCTTGAACCTGAA 752774 30 100.0 39 TGAACCTGAA .............................. TGTAGACGGCTCCCCTTTAAAGCCCGTCTATATTAAGAG 752843 30 100.0 44 ATATTAAGAG .............................. TGTATTAAGTCCCCAGGCTGGCCAAATCGGGTCTGGGATAAAAT 752917 30 100.0 43 GGGATAAAAT .............................. TCGAACTAAATTCGGGTCTGTGCAAGGATTGCCAGACCCACAA 752990 30 100.0 34 AGACCCACAA .............................. GAATTAGACGCGCAAGTGTACCAAGGTCCAAGAA 753054 30 100.0 37 GGTCCAAGAA .............................. GTTGTAGTTGGTTCTGGGGTAGAATGAGCAAAAGCAA 753121 30 100.0 43 GCAAAAGCAA .............................. AAGACGCGATTTTCGCGTATTGGAGGCATCCGAGAGCCTTTGC 753194 30 100.0 42 GAGCCTTTGC .............................. GATAAAGAGGGAAGTAACATTTTATTTAGATTTGCACAATTT 753266 30 100.0 38 TGCACAATTT .............................. AATAATCGCAGATGACGACGATGAGGAAGACAACGATG 753334 30 100.0 37 GACAACGATG .............................. GAAAAAGAATCGCTACAGACATGGCAAAAAGCATTGG 753401 30 100.0 44 AAAGCATTGG .............................. TAACCGAAAAAGAATTGAGGCAAATGATAAACAACAAAATTAAA 753475 30 100.0 39 CAAAATTAAA .............................. CAATATCCCGCTTGAGGAATACATCAGAAAATTCATTCA 753544 30 100.0 41 AATTCATTCA .............................. TAATCAGGGACCCAGATGTATGGGGGGCTCCCTGGGAGTGT 753615 30 100.0 37 CTGGGAGTGT .............................. GAAATAAAACAATTCAACGAAAAAATCCTTGATGCCC 753682 30 100.0 38 CTTGATGCCC .............................. AGAAAAGAAAGGAGCTGATAGAATGTGTAGACTACTTG 753750 30 100.0 44 AGACTACTTG .............................. AAAGGTAAAGAGATTTGGGGGGTTTTTGAAACCAAGAAATACAA 753824 30 100.0 44 AGAAATACAA .............................. GGAGAAATTATGAGGAAAATTTACGAATCAAAAAAGGTAGATAA 753898 30 100.0 37 AGGTAGATAA .............................. ACGAAGGCTATGACGATGAAGAAGAGGATTATTAATA 753965 30 100.0 38 ATTATTAATA .............................. CGATGCAATGCCTGGAGCTGCTGCAAGTGCTGCTAATA 754033 30 100.0 42 GCTGCTAATA .............................. GATTTACGAAGTGCAATTAATACTGTTATAGAACCGTTAACA 754105 30 100.0 42 ACCGTTAACA .............................. GCATCATTACAACTTGGTATGGGAATATGCAAAAGCGTTCAA 754177 30 100.0 43 AAGCGTTCAA .............................. ACATTACCTTTAAAGCTAATACATGGCGTTAGTAAAAGCACAC 754250 30 100.0 38 AAAAGCACAC .............................. AAAGATTATCGTGAAATTCAACAACGAAATGGAAAAAA 754318 30 100.0 46 ATGGAAAAAA .............................. CGAATAATAATAATCGACAACAGATTATTCTGTGATTGGAAAATCA 754394 30 100.0 TGGAAAATCA .............................. TTACTGAGGT ========== ====== ====== ====== ========== ============================== 31 30 40 GTTTTCATTCCTCATAGGTAGATTCTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [127,52] Score: 0.18/0.18 # # Final direction: R [0.18,0.78 Confidence: MEDIUM] >NC_011653 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 763252 30 100.0 37 GGTAGAAAGA .............................. TTGTTGTCCTTGAACGACAGGATCGAATAGAGCTTGA 763319 30 100.0 39 TAGAGCTTGA .............................. CAGTAAAGAGCACGCAGAAGAAGTAATTATTATACACAG 763388 30 100.0 39 TTATACACAG .............................. CACTAAAAGCATTGCTAAGGATTATGCAGACTATGACGA 763457 30 100.0 40 ACTATGACGA .............................. ATTTATGATGTAATTGACGGTACTTCTTCCATAAGTAAAG 763527 30 100.0 37 ATAAGTAAAG .............................. ATCATTAATACCAAAATGAAGATAAAGGAGGGACTCG 763594 30 100.0 37 GAGGGACTCG .............................. CTTTACCCAGTTGAGAAGGTGAATTATGCTGATGATT 763661 30 100.0 36 GCTGATGATT .............................. TTATTCGAGAAATTGGGAACCACATTATGTACCAAT 763727 30 100.0 40 ATGTACCAAT .............................. AGGAAGAAGTGATAGTAATACACACCAAAGACCAACTAAA 763797 30 100.0 ACCAACTAAA .............................. CTATAAATAT ========== ====== ====== ====== ========== ============================== 9 30 38 GTTTTCATTCCTCATAGGTAGATTCTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [200,535] Score: 0.18/0.18 # # Final direction: R [0,0.55 Confidence: HIGH] >NC_011653 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 884384 30 96.7 37 TGTAAAATAA ......T....................... ACATATGGATATACGCAGATAAAATTAGATTATTTTA 884451 30 100.0 38 GATTATTTTA .............................. TCACCCTTCCCTACTCGGATACAGAATGCTGTGTCTCG 884519 30 100.0 35 CTGTGTCTCG .............................. CCAAATGGCAGCGAGATACTGTTTAGAGGTATGGA 884584 30 100.0 38 GAGGTATGGA .............................. GGAAATTCCAGCAGTGCTCTCCGGAGTCGAAAAGCAAG 884652 30 100.0 37 GAAAAGCAAG .............................. TATTTTGGAGGTGATAAGAAAAAGGCATTAAGCATTT 884719 30 100.0 36 TTAAGCATTT .............................. TATTACAAGTGTTTGTTTTAGGACTCGCAGCAACAA 884785 30 100.0 36 GCAGCAACAA .............................. TCAGATATATGGGCATATTAAGTATCGTATAAAGGC 884851 30 100.0 36 GTATAAAGGC .............................. TAGATTTACTGTTAAAGAAGTAAAATATTTAGACCC 884917 30 100.0 37 ATTTAGACCC .............................. TAGTTTTAGTATTAGAAAAATTAACTAGAAATAATTC 884984 30 100.0 36 GAAATAATTC .............................. CAACCACCTGAAAATTTAGGACGTGGGTCTGTAGTA 885050 30 100.0 37 GTCTGTAGTA .............................. TTTATTATGATGCTACAAAAAAGGTTTTTATATCCCA 885117 30 100.0 36 TTATATCCCA .............................. TGATTGGGAAGAATGGTTAGGTACATTAGAAAACGA 885183 30 100.0 35 TAGAAAACGA .............................. TTGGAACGATGTCGCAATTATAAATGTTCCTGTAA 885248 30 100.0 38 GTTCCTGTAA .............................. ATTTCTCAATATTATTAGCGATTTTCCCGAAGATTAAC 885316 30 100.0 35 GAAGATTAAC .............................. AATTAATTCTTGTAGGTTGCCTGTTTCAATTTCTA 885381 30 100.0 37 TCAATTTCTA .............................. TAATCTCTGCCACACTTCACACCTCTTCAAATAACGG 885448 30 100.0 38 CAAATAACGG .............................. AGGAGATTTTTTTGGCATGCTAAAACAGTTTTATCTAA 885516 30 100.0 37 TTTTATCTAA .............................. CACCACCAAATTTAACTTTCTTGTTCAAGTTTCACAA 885583 30 100.0 38 AGTTTCACAA .............................. CATTAGCTTAACGTATGCTGTAAAAAAACATTGTATAA 885651 30 100.0 36 CATTGTATAA .............................. TAATAATATTAAATACAATTAGATATAGAAACAAAA 885717 30 100.0 38 AGAAACAAAA .............................. GAATTCGATAACATAACTATAACTGCTAATAAGGTAGT 885785 30 100.0 ATAAGGTAGT .............................. CATATATTAC ========== ====== ====== ====== ========== ============================== 22 30 36 ATTTCAATTCCTGCAAGGTAAGGTACAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.60,-1.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [92,626] Score: 0.18/0.18 # # Final direction: R [0.37,5.09 Confidence: HIGH] >NC_011658 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================== ====== 1618961 26 100.0 37 NNNNNNNNNN .A..........A.C........... AGTAACTCCAGTAGAGCCAGTGTTGCCGGTAGCTCCG 1619024 26 100.0 28 NNNNNNNNNN .......................... AGTGTCGCCGGTAGCTCCAGTATCGCCA 1619078 26 100.0 28 NNNNNNNNNN .......................... AGTGTCGCCGGTAGCTCCAGTGATACCA 1619132 26 100.0 19 NNNNNNNNNN .......................... AGTGTTGCCGGTAGCTCCG 1619177 26 100.0 28 NNNNNNNNNN .......................... GGTGTTACCAATAGCTCCAGTGTTGCCA 1619231 26 100.0 19 NNNNNNNNNN .......................... AGTGTCGCCGGTAGATCCA 1619276 26 100.0 1 NNNNNNNNNN ....AG..A...C.A..G........ NNNNNNNNNN ========== ====== ====== ====== ========== ========================== 7 26 26 GTAGGTCCGGTGTTGCCAGTAGGTCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.00,-3.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [3-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [36.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [1449,821] Score: 0/0.18 # # Final direction: R [0.41,1.01 Confidence: MEDIUM] >NC_011660 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2094578 29 100.0 36 NNNNNNNNNN T..ATG....................... TCCGATTGCATTAGCTTTTACAGGTGCTTTGTTAGT 2094643 29 100.0 35 NNNNNNNNNN ............................. GGACGCTAATTTTGTAAATCCGTTTTTCATTGTTA 2094707 29 100.0 37 NNNNNNNNNN ............................. TGATGGCGCTAAAAAAGCATGGGGAGCGGTTCAAGAT 2094773 29 100.0 36 NNNNNNNNNN ............................. AGGAATTTCCAGAGGAGCATACTCGCACATTGAAAA 2094838 29 100.0 36 NNNNNNNNNN ............................. CAAAGTAATCCAAGAGAGACTGGGGCACGCAGACAT 2094903 29 100.0 34 NNNNNNNNNN ............................. TAGTTACCATACTACCGCCAACTTTAAAAGAATA 2094966 29 100.0 36 NNNNNNNNNN ............................. CCAAAAAATGCACAAAATAACCTAGAAGTTAAAACC 2095031 29 100.0 37 NNNNNNNNNN ............................. ACCGGAAAACAAATTTAGGCTTGATTTCTTTACTTTC 2095097 29 100.0 36 NNNNNNNNNN ............................. ATGAAGATGATTTCAAACTAGCTACAGATAAAGATA 2095162 29 100.0 35 NNNNNNNNNN ............................. TCACTGTCTTTCACTTTAAAAGTTGCTCCAGAAAG 2095226 29 100.0 34 NNNNNNNNNN ............................. GCCATCCAAAAACACTCCTTATCCTTAATTTATA 2095289 29 100.0 36 NNNNNNNNNN ............................. AGTTTTAAATTTAGAACGACGGAAGACGGCGTTTCC 2095354 29 100.0 36 NNNNNNNNNN ............................. AACTTGATGTTGCTAGTTTACCTGATGATCAATTTT 2095419 29 100.0 38 NNNNNNNNNN ............................. GTAGAAATTTTCGATACGGATTTCGATACACTAATGTA 2095486 29 100.0 37 NNNNNNNNNN ............................. CTTTGGCAGAGGAAGTTGGTCATCATCATTTGACTGT 2095552 29 100.0 37 NNNNNNNNNN ............................. GATAATTAAGTAAGTCGCCTGCAGTTTCCGGTCCAAT 2095618 29 100.0 37 NNNNNNNNNN ............................. TATCACGGAAGTGCAAGAGTCGGAGAGTTCTGTAGAT 2095684 29 100.0 36 NNNNNNNNNN ............................. TGCGCAGGGTGATGCTAGTCTTGTAGGTGCTAAGTA 2095749 29 100.0 36 NNNNNNNNNN ............................. GACAACCCCACTTTAACCAAAAGCAGGCTAAAAGAC 2095814 29 100.0 37 NNNNNNNNNN ............................. ATGAAATCTTAAAAAAGAGAAAGAACAGCAAGAAGCA 2095880 29 100.0 36 NNNNNNNNNN ............................. TAATGTCATATAGTATCATATCAATAAAAAGCGTTG 2095945 29 100.0 34 NNNNNNNNNN ............................. GGGGCTAACGCGCTTAATTGTTCGCGACTAGCTT 2096008 29 100.0 35 NNNNNNNNNN ............................. ATACATGCAGTTTATTATTCGTTTTATTCAACCGT 2096072 29 100.0 37 NNNNNNNNNN ............................. ATGAAACGTCCGAAGCTAGTAGGACATGAATTGGTGA 2096138 29 100.0 36 NNNNNNNNNN ............................. GGGGAACCATTTTGCAAAGCTCATTATAAGAATACA 2096203 29 100.0 35 NNNNNNNNNN ............................. AAAAAAGAAGGCTGGCGCGCACGTTTTCCAAACAA 2096267 29 100.0 34 NNNNNNNNNN ............................. AAGTTAAAAGTGTCTAAAGAAAAAGCCAAAAAAA 2096330 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 28 29 35 ATTTACATTTCATAATAAGTAGTTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:82.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [74,199] Score: 0.18/0.18 # # Final direction: R [0.27,0.59 Confidence: MEDIUM] >NC_011660 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2112037 29 100.0 36 CGTGACGATT ............................. TTCAAACGGAAATGGATCCACTGCTAAATCTTCCGG 2112102 29 100.0 37 AATCTTCCGG ............................. GAGGCAATGAACATAGGACTGAAAAATAAATGAACAG 2112168 29 100.0 35 AAATGAACAG ............................. ATTGATGGGATTATATGCCGAAAATTAAATATACG 2112232 29 100.0 37 TAAATATACG ............................. GATAGTCAGAAACATCAAGATAAACTTGCCAGTATAT 2112298 29 100.0 34 GCCAGTATAT ............................. GTTAAGCAATTAAAACAGGGCGCAGTTGGGGAAA 2112361 29 100.0 GTTGGGGAAA ............................. CCGCTAACTT ========== ====== ====== ====== ========== ============================= 6 29 35 ATTTACATTTCACATTAAGTAACTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [61.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [144,238] Score: 0/0.18 # # Final direction: R [0.27,0.37 Confidence: LOW] >NC_011661 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 470870 30 100.0 37 NNNNNNNNNN .............................. AAGTCTGGGACGTGGTCGAACTTGTTGAGATTTTGAA 470937 30 100.0 37 NNNNNNNNNN .............................. AGAGTGCCCGGGGTAGGCTTCTACCCCGGGAGATCCT 471004 30 100.0 38 NNNNNNNNNN .............................. TGGATGGATACATGGGTAGGCCAAAAAAATCTAACACG 471072 30 100.0 36 NNNNNNNNNN .............................. CTCCTCGCTTTTTCTTCTTCTTTCTGTTTAATTTTG 471138 30 100.0 36 NNNNNNNNNN .............................. TTGTGAATTCTGAAATGTATGTGTTCTCATTTCGTT 471204 30 100.0 36 NNNNNNNNNN .............................. CAATAGCTACGTCATAAACATCTTGGTCTGTCGCTG 471270 30 100.0 37 NNNNNNNNNN .............................. TTTAAAGGAATAACTGCTTCTGCTCCTTTTTCCCCGA 471337 30 100.0 37 NNNNNNNNNN .............................. TGCTTTGCCAAGTGTCTTTTACAAGCATATCCCAAAG 471404 30 100.0 37 NNNNNNNNNN .............................. AGCCGAAAAAGAATTCGACGAATATTTGGTAGAATTC 471471 30 100.0 37 NNNNNNNNNN .............................. GTATACCCAATCCTCTTCTATGTGGAATTCCACGAGA 471538 30 100.0 37 NNNNNNNNNN .............................. ATGATCCTGAAATATGGCAGGAGATCCTCAAGGCAAT 471605 30 100.0 36 NNNNNNNNNN .............................. GAATACAAAGAGAAAAAGATGAACAGGCGGTCCAAA 471671 30 100.0 37 NNNNNNNNNN .............................. TGTTTGAATGATACTGCTGCGGCAGACTACCCTGGTT 471738 30 100.0 36 NNNNNNNNNN .............................. GTTTCCAAAGAATTTTTGGAAGGGGAGTGAAGAGAA 471804 30 100.0 36 NNNNNNNNNN .............................. GATGTCTGAAACATTTGCTGAAATGGAAGCAGCGGC 471870 30 100.0 37 NNNNNNNNNN .............................. ACGGAGACTGGACGATATCGGAGGCGTAGTATGGAAG 471937 30 100.0 36 NNNNNNNNNN .............................. TTCTCCTTTAGAAGTTTTAGGAGAAGTTAAAGATGT 472003 30 100.0 37 NNNNNNNNNN .............................. ATAACGGTTAAGGACTTAGGAGACGGTACTTACAAGT 472070 30 100.0 36 NNNNNNNNNN .............................. CTGATGAAGAATACGAAAAACTCGAGGAGGAATTTT 472136 30 100.0 36 NNNNNNNNNN .............................. GATGTCTGAAACATTTGCTGAAATGGAAGCAGCGGC 472202 30 100.0 35 NNNNNNNNNN .............................. CTCCAACCTCTTGTACATAAGAAAATACGGATACA 472267 30 100.0 36 NNNNNNNNNN .............................. TGATAAGACGATCGAAAAATCAACAGAGGCACTTAC 472333 30 100.0 37 NNNNNNNNNN .............................. ATTGATTCCTCCAAATTTTCCATTCAAACAAAAGAGG 472400 30 100.0 36 NNNNNNNNNN .............................. CTCCCTCCTTCACGTTTATCTTGGCCTCAAGCCTTT 472466 30 100.0 36 NNNNNNNNNN .............................. GAAGCCCGTGCTGACTCACGAAGAGCATCCATGGCT 472532 30 100.0 36 NNNNNNNNNN .............................. AGATGGAGAGAAGCTGTTTAAGTACGGCGTATGGGA 472598 30 100.0 36 NNNNNNNNNN .............................. AGAGACAAGTACTGTTATTTTGAAAAGAGGGATAAG 472664 30 100.0 39 NNNNNNNNNN .............................. CGTGAAAAAGAGCCAGTAGCCGATTTTGAGGTTGCTATA 472733 30 100.0 37 NNNNNNNNNN .............................. CACTTGTGGAAATCACGAGCCAGGGAGTCTCACTCCT 472800 30 100.0 36 NNNNNNNNNN .............................. TTGAGGAAGTTTCCACAAAGAATAAAATCGGCGTAA 472866 30 100.0 36 NNNNNNNNNN .............................. AGATGGAGAGAAGCTGTTTAAGTACGGCGTATGGGA 472932 30 100.0 37 NNNNNNNNNN .............................. AAATTAGGATGTGATAAACTTACATCTCCACTTGACA 472999 30 100.0 37 NNNNNNNNNN .............................. TCCAACTTCTTGTGTAGGCTCATTTATTTCCTCCAAG 473066 30 100.0 36 NNNNNNNNNN .............................. GGCTTTTCCATTGGCTGGCGCTAAAGCAAGATGGAA 473132 30 100.0 36 NNNNNNNNNN .............................. TTAAGAAATTCATCCACATTTTTATAATGTTGGTTG 473198 30 100.0 37 NNNNNNNNNN .............................. GTAATTGAGAAGAATCGTTATGGAGACAAGGGTGTCA 473265 30 100.0 37 NNNNNNNNNN .............................. AGATTTTGTAAATATCAACGAACCTGAAAAAATTTTT 473332 30 100.0 36 NNNNNNNNNN .............................. AAAGTAGCCCCCACAACTTTTTGGAAATATCCCAGG 473398 30 100.0 38 NNNNNNNNNN .............................. ACTTCATCTCTATCGATTACCAAAATATTTCCTATTTC 473466 30 100.0 38 NNNNNNNNNN .............................. TAGCCAAAATCCTCATAAAAATCTGGGAAATCTTCTTT 473534 30 100.0 37 NNNNNNNNNN .............................. TACTTTTTATCAACCAGACCGAACCAAAACTACTCCT 473601 30 100.0 36 NNNNNNNNNN .............................. TTTACTCATCCTCAAATTCATAGGAAAGGAGGTGAA 473667 30 100.0 36 NNNNNNNNNN .............................. TTAAACTAAAAATCATCGGGCAAATCTGGCAAATTA 473733 30 100.0 37 NNNNNNNNNN .............................. TCAATACCCACTGCCCCAATAGTTTGAAAACAGGAAA 473800 30 100.0 36 NNNNNNNNNN .............................. GTAAATAAACCATCCAACCATGAATTACTAGAAAAT 473866 30 100.0 37 NNNNNNNNNN .............................. GCAAAGAAGAAAGGCATTTCTATTTCAAGGGTTGCTT 473933 30 100.0 38 NNNNNNNNNN .............................. TTTCTATGTTATCAAATATACTCCTTGCCCTTCAGCTT 474001 30 100.0 36 NNNNNNNNNN .............................. ATGTTATATAAGGAGATAAAATGAACAACGATGAAT 474067 30 100.0 36 NNNNNNNNNN .............................. GAAACCTTACTTCAAGCCTGTCTCCATAACGTCCAT 474133 30 100.0 37 NNNNNNNNNN .............................. TTTCTTTTAATTCGATATATAATTTCGCAAAATCTAA 474200 30 100.0 37 NNNNNNNNNN .............................. GAAATTTTGGCTGTTTCTACAAGAAAAGTAATAAGAA 474267 30 100.0 36 NNNNNNNNNN .............................. CTTCAATGGGATGCTTTTGTAGGTTTGCAAGTGCAA 474333 30 100.0 32 NNNNNNNNNN .............................. CCGTAAAAAGGGCAAAAAAGCTACCGCTTAAA 474395 30 100.0 1 NNNNNNNNNN A..AACTA....................TT NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 54 30 36 GTTTCAATCCCTTATAGGTACGCTACAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [66,380] Score: 0.18/0.18 # # Final direction: R [0.41,5.05 Confidence: HIGH] >NC_011661 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 615153 30 100.0 36 CCCCCTCCTC .............................. ATGCCGGGGTAAAAAATTTAAAGATCTATGAAAGAA 615219 30 100.0 37 TATGAAAGAA .............................. GGGCCCATTCCTCAGGGTCATACTCATATGAGTACTC 615286 30 100.0 38 ATGAGTACTC .............................. GGACTCCCAAAAATTCTTTTGAAGGGGAGGGTTTGAAA 615354 30 100.0 36 GGGTTTGAAA .............................. ACTCTACATCCGTGAACTCAAAAAAGCGAGCGAATT 615420 30 100.0 36 CGAGCGAATT .............................. AAAAAAGAGGGGATTCTCTTAGAAGTTTATTCAAAC 615486 30 100.0 38 TTATTCAAAC .............................. ACAAATATCCCTGAGGGGTACGAAAGGGAGGTTGTATA 615554 30 100.0 35 AGGTTGTATA .............................. TCCCTTTTTTATTTTTTTTAAGAATCCCATTGGTC 615619 30 100.0 37 CCCATTGGTC .............................. CTTTCTACGACATAGATAGCATGAGTGATGAGGAATA 615686 30 100.0 36 ATGAGGAATA .............................. CCTTTTTAGTCCTGTTCTTAAGTGGGCAGTAGACTT 615752 30 100.0 35 CAGTAGACTT .............................. TAGACTACAAGAATAAACCAGACGCCCAACTATAT 615817 30 100.0 38 CCAACTATAT .............................. AAAGCAGGGGAAGGAGGCGAGAGGGTTGAAAAAGGCCA 615885 30 100.0 37 AAAAAGGCCA .............................. ATGTACACATGCTTCCAGTGGAAAGAGAGATTTGGGA 615952 30 100.0 37 AGATTTGGGA .............................. GGCAAGTAGTTTTGTCTGTATCAAATGAGAAGAGTGT 616019 30 100.0 38 AGAAGAGTGT .............................. TTAGCAGAAGCTTTGTATTTTATTGCCTCTTCAGGCAT 616087 30 100.0 37 CTTCAGGCAT .............................. ATTTCAACAAAATTTCAATGTTTTGCATCTATGTGGG 616154 30 100.0 38 TCTATGTGGG .............................. GTAAAGCTCGTTAAGAACATCGTTATCCCTGACGTACC 616222 30 100.0 37 CTGACGTACC .............................. CAATTTGGAAAGTTTCTCAAGTCAGGTATCTAAAGGA 616289 30 100.0 36 ATCTAAAGGA .............................. GGATCTCTATGATAATCTTCTTAATTTCTTTATCAT 616355 30 100.0 37 TCTTTATCAT .............................. GGATAGTACCTCCAGAAACGTCATAGACAAATCCATC 616422 30 100.0 37 CAAATCCATC .............................. GAGTAGTAATGAACACTCCGATTGAACCTGATTGGGA 616489 30 100.0 37 CTGATTGGGA .............................. GTGAATTGAATATCCCTGAAATTGAAGAAAAAGAAAA 616556 30 100.0 37 AAAAAGAAAA .............................. GAATAGCGCCAGACCTACTAATGGGTTTTACAACGAT 616623 30 100.0 37 TTACAACGAT .............................. GAGTAGGTAAAACCCATTTATCCTATGCATTGCTGAA 616690 30 100.0 37 CATTGCTGAA .............................. TTCTAAGGGCGCGTGAGATCTCTCTCCAGTACCATCA 616757 30 100.0 37 AGTACCATCA .............................. TTCTTTGGCATATTCATAAAAAAAAGGATTTGTATCT 616824 30 100.0 35 ATTTGTATCT .............................. GGAGATAATCAACAATTACAAGACACTTGTTCTTA 616889 30 100.0 37 CTTGTTCTTA .............................. TTCTTTGGCATATTCATAAAAAAAAGGATTTGTATCT 616956 30 100.0 35 ATTTGTATCT .............................. GGAGATAATCAACAATTACAAGACACTTGTTCTTA 617021 30 100.0 37 CTTGTTCTTA .............................. CAACTTACGTTTCCAGATGTCGGCTTGGGTATTACAT 617088 30 100.0 36 GGTATTACAT .............................. AGAAAAATTTAATCCAGGGAAGAGCTGGAGATTTGG 617154 30 100.0 36 GGAGATTTGG .............................. GTTGTAGACATAAGGGGGGTGAAGATGTGATGAAGA 617220 30 100.0 GTGATGAAGA .............................. CCGTAAAAAGGGCAAAAAAGCTACCGCTTAAAATTAACTA ========== ====== ====== ====== ========== ============================== 32 30 36 GTTTCAATCCCTTATAGGTACGCTACAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [66.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [259,481] Score: 0/0.18 # # Final direction: R [0.27,4.87 Confidence: HIGH] >NC_011662 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2518071 29 100.0 32 NNNNNNNNNN ............................. CCAGGCGCAGAACGCCCGGTCGGCCTCGGCGA 2518132 29 100.0 32 NNNNNNNNNN ............................. TCGAACACGTAAGCCATGCCGCCGCACTGCTG 2518193 29 100.0 32 NNNNNNNNNN ............................. TCGCCCTGCTCCATGCTCTCGAATGCGAGCGA 2518254 29 100.0 32 NNNNNNNNNN ............................. TCGTTGATCGTGATCGGCTCGTCGGCGTCTTG 2518315 29 100.0 32 NNNNNNNNNN ............................. CTCGAAGAAGCGCCGCCAGGCGACAAGCCCGT 2518376 29 100.0 32 NNNNNNNNNN ............................. GCGACCTTCTCAGCGTCATACAGGCCGTCCGT 2518437 29 100.0 32 NNNNNNNNNN ............................. CATCGACATCATGTGGGAGGCCCCTACGGTCG 2518498 29 100.0 32 NNNNNNNNNN ............................. AGGGCGCGCCGTGCTCGATGATCCGGCGTCGG 2518559 29 100.0 32 NNNNNNNNNN ............................. CTGCTCGAGGCCTGACATGGACAAGATCACAG 2518620 29 100.0 32 NNNNNNNNNN ............................. TCGCGCAGGCCGCGGGCGATCCACGTCGGGCC 2518681 29 100.0 32 NNNNNNNNNN ............................. GTGCCGGCGGTGTCGTGCTGGTGCCAGGCGCC 2518742 29 100.0 32 NNNNNNNNNN ............................. TCGGCGACGAAGTTCCGGTAGGTCGCGCCCGG 2518803 29 100.0 32 NNNNNNNNNN ............................G CTGTCGCGGCGCTTGTCGGCCTCGTCTTCCAC 2518864 29 100.0 32 NNNNNNNNNN ............................. GCGGGAAGGGCGCGATAGATCTGCGCAGCGCG 2518925 29 100.0 32 NNNNNNNNNN ............................. CTCCGCCCGCTATGACGGGCAACCGTAACACC 2518986 29 100.0 32 NNNNNNNNNN ............................. TTGAGTTGCTCGATCGTGGCGGCCTGAACGAC 2519047 29 100.0 32 NNNNNNNNNN ............................. CGCGACTACTACATGCCGCTGTGCATCCTCAA 2519108 29 100.0 32 NNNNNNNNNN ............................. TTGCCGATGATGGCGACCGTCTGCTCGAGCGA 2519169 29 100.0 32 NNNNNNNNNN ............................. GTGTTCCGTGCCGATTCGGTTGCCCCATTACC 2519230 29 100.0 32 NNNNNNNNNN ............................. GTCCACGAAAAAATACCTATGGATTGCAATCA 2519291 29 100.0 32 NNNNNNNNNN ............................. TGTACCTGAATCGAGTTTCGTCGCCGGAGTGG 2519352 29 100.0 32 NNNNNNNNNN ............................. GAGCCCGGGCGGGGGGATTGCACTGTTTGCCG 2519413 29 100.0 32 NNNNNNNNNN ............................. GTCCAGGCATAGGTCGGGCTAGTGACGCCACT 2519474 29 100.0 32 NNNNNNNNNN ............................. TGGATCGGGTCTTCGGGCATTCCGACCTCAAC 2519535 29 100.0 32 NNNNNNNNNN ............................. TGTACTGGGTGATCAGATGCACGCCCCAGACG 2519596 29 100.0 32 NNNNNNNNNN ............................. GGACAGACCGCTACCGTCCTCGCGTCGTACAA 2519657 29 100.0 32 NNNNNNNNNN ............................. GGACAGACCGCTACCGTCCTCGCGTCGTACAA 2519718 29 100.0 32 NNNNNNNNNN ............................. GGACAGACCGCTACCGTCCTCGCGTCGTACAA 2519779 29 100.0 32 NNNNNNNNNN ............................. TCAGCCAGGAACAGCGCGACAGTCTGCGCCGC 2519840 29 100.0 32 NNNNNNNNNN ............................. GTGCGCTCCCACGGATAGAGTTGCGCCGCCCG 2519901 29 100.0 32 NNNNNNNNNN ............................. CTGAGCCGCCAGGCTGTCATCAATGACGACCT 2519962 29 100.0 32 NNNNNNNNNN ............................. GAATCTCGCCTGCCTTTCATTGAGCGCCATTC 2520023 29 100.0 32 NNNNNNNNNN ............................. GGCGGCGTTGTAGATCGGCTGTCCCACATCCA 2520084 29 100.0 32 NNNNNNNNNN ............................. TCGGAGGTGGCGCCCCCGTTTTGGCCTTCGGC 2520145 29 100.0 32 NNNNNNNNNN ............................. CATTCCGGCGTCGGATAGAACTGGTGCGACTT 2520206 29 100.0 32 NNNNNNNNNN ............................. TGCTGTGTTGCGTAATTCGCCGACAGCACGCC 2520267 29 100.0 32 NNNNNNNNNN ............................. GCCGACGAACGTCCAAGTGTGGTCCTCACCCT 2520328 29 100.0 32 NNNNNNNNNN ............................. GAATACCAGATCCCGCGCGGTCGGGTCTATTT 2520389 29 100.0 31 NNNNNNNNNN .........A..................G CCGATCGACGCCGTCACCGGCGCCACCATCG 2520449 29 100.0 32 NNNNNNNNNN ............................. CACCTCACGGCCGCCCCGCGATCACGTGGTCA 2520510 29 100.0 32 NNNNNNNNNN ............................. CTCCACTCGTGTGTACGGGATGCCCGTTCCAC 2520571 29 100.0 32 NNNNNNNNNN ............................. GGCTCGGTGTGCGCGGCAAGGAGGCTCGGTCT 2520632 29 100.0 33 NNNNNNNNNN ............................. GGAGTCGCTCACGGTGTTCTCGGTGTAGGCGGG 2520694 29 100.0 33 NNNNNNNNNN ............................. GGAGTCGCTCACGGTGTTCTCGGTGTAGGCGGG 2520756 29 100.0 32 NNNNNNNNNN ............................. GAGCGGCCCGAGTATCCGCCGGTGCTGACCGG 2520817 29 100.0 32 NNNNNNNNNN ............................. CAGTACTTTGGCCTCACCACGCCCGAGCTGCA 2520878 29 100.0 1 NNNNNNNNNN ........A.................... NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 47 29 32 GGTTCCCCCGCGTCCGCGGGGATAGGCCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [61,78] Score: 0/0.18 # # Final direction: F [0.68,0.37 Confidence: LOW] >NC_011725 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 1229842 19 100.0 53 NNNNNNNNNN ..T..A...........C. GTCCAGTGGCCCCAGTCGGCCCCGTAGGTCCAGTAGCTCCAGTGTCACCAGTC 1229914 19 100.0 53 NNNNNNNNNN ................... CCCCAGTGTCACCAGTCGGCCCCGTAGGTCCAGTAGCCCCAGTGTCACCAGTC 1229986 19 100.0 53 NNNNNNNNNN ................... CTCCAGTGTCACCAGTCGGCCCCGTAGGTCCAGTAGCCCCAGTGTCACCAGTC 1230058 19 100.0 35 NNNNNNNNNN ................... TCCCAGTGCCACCAGTAGGTCCAGTCGGTCCAGTT 1230112 19 100.0 26 NNNNNNNNNN ................... GTCCAGTTGGCCCGGTAGGTACAGTC 1230157 19 100.0 1 NNNNNNNNNN ................... NNNNNNNNNN ========== ====== ====== ====== ========== =================== 6 19 44 GGCCCCGTAGGTCCAGTAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [3,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [53.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [536,309] Score: 0/0.18 # # Final direction: R [0.27,0.41 Confidence: LOW] >NC_011725 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 4649631 19 100.0 53 NNNNNNNNNN ................... TGACTCTTCTGTTTCTGTAATTACTTCCACTTCTTCTAGCTCTTTCGCTTCCG 4649703 19 100.0 44 NNNNNNNNNN ................... TGACTCTTCTGTTTCTACAATCACTTCTACTTCTTCTGCTTCCG 4649766 19 100.0 44 NNNNNNNNNN ................... TGACTCTTCTGTTTCTACAATCACTTCTACTTCTTCTGCTTCCG 4649829 19 100.0 44 NNNNNNNNNN ................... TGACTCTTCTGTTTCTACAATCACTTCTACTTCTTCTGCTTCCG 4649892 19 100.0 44 NNNNNNNNNN ................... TGACTCTTCTGTTTCTACAATCACTTCTACTTCTTCTGCTTCCG 4649955 19 100.0 44 NNNNNNNNNN ................... TGACTCTTCTGTTTCTACAATCACTTCTACTTCTTCTGCTTCCG 4650018 19 100.0 38 NNNNNNNNNN ................... TGTTTCCATAACTACTTCTTCTGGCTCTTTCGTTTCTG 4650075 19 100.0 32 NNNNNNNNNN ................... CGTTTCCGCAATTACTTCCACTTCTTCTGACC 4650126 19 100.0 20 NNNNNNNNNN .TTC.G............. AGGTGCCTCTGTTTCCATAA 4650165 19 100.0 53 NNNNNNNNNN .T.C.T....A.GC..... CGTTTCTGCAATTACTTCTACTTTTGACACTTCTTCTGGTATTTCCACAATGA 4650237 19 100.0 1 NNNNNNNNNN TTG..T....A.G..T... NNNNNNNNNN ========== ====== ====== ====== ========== =================== 11 19 41 CAATTACTTCCACTTCTTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.16%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [2492,1182] Score: 0.18/0.18 # # Final direction: F [0.59,0 Confidence: HIGH] >NC_011726 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================================== ====== 3093017 38 100.0 42 AGACAGGTGG ...................................... TTATGTTGCGTAAAGGAAGGGTGAGTAGTCGGAATTTCTCGG 3093097 38 100.0 35 AATTTCTCGG ...................................... TTCACAGCAAGATCTAGCCGTACGACTAAACTGCC 3093170 38 100.0 38 CTAAACTGCC ...................................... AAACCAATAGGAGCTAGATAAAGCTTTTTTATAGTTAG 3093246 38 97.4 TTATAGTTAG C..................................... AATAAGGATTAATTTCCCAAGTTAAGTTTTTGA ========== ====== ====== ====== ========== ====================================== 4 38 38 AGTTTCATCAACCCTCCTGATGTGGGATGGGTTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.63%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-10.50,-8.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [578,376] Score: 0/0.18 # # Final direction: F [0.78,0 Confidence: HIGH] >NC_011726 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================================== ====== 3103986 38 100.0 33 AGAAGGTAAA ...................................... ATGATCAGGCTCCGATAGACTGGGGTGGCTTTG 3104057 38 100.0 34 GGTGGCTTTG ...................................... ACTTAATCGCCATCAAAATTGCCTCTATTTCTGC 3104129 38 100.0 37 CTATTTCTGC ...................................... GCTAAAGTTTTCGCTTGATGCAGTGGGGGTAGCAAAG 3104204 38 94.7 GGTAGCAAAG ........................T............G CAACACCAA ========== ====== ====== ====== ========== ====================================== 4 38 34 GTTTCATACAGGTTTTTGACCTCCCATTGATTGAAAGA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.16%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.20,-2.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [563,621] Score: 0/0.18 # # Final direction: F [5.28,0 Confidence: HIGH] >NC_011726 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 4328521 37 100.0 37 TGCTTATTCT ..................................... ATTAGGCGAGTTTTTTGACTTCTTGATGATAGCACGG 4328595 37 100.0 35 GATAGCACGG ..................................... GTTTGAGATTCTAGGATTGGGGGGAAATTGTCTTG 4328667 37 100.0 37 AATTGTCTTG ..................................... TACACATAATACTTTTTATGCTTCACAAATTATCAAC 4328741 37 100.0 35 AATTATCAAC ..................................... TCAGCTCTTTGTCTGATTTCTTGTCTTTTCCTGTT 4328813 37 100.0 36 TTTTCCTGTT ..................................... TCCATATTATTTGAAAAATCGATAAACAATCGCAAT 4328886 37 100.0 34 CAATCGCAAT ..................................... AAATCGTTATTGTTATGCAAAATTTCTTTGCCCT 4328957 37 100.0 37 TCTTTGCCCT ..................................... TGTTTTGACAATAACTGTATTGAAACCATTAGTTATC 4329031 37 100.0 32 ATTAGTTATC ..................................... TTTTTCAGCCAATTTTTGACTCTTGAAGTCCG 4329100 37 100.0 35 TTGAAGTCCG ..................................... TCAAAGGTTGTGACTTTTACCGTAGGAGAAGTCTT 4329172 37 100.0 36 GAGAAGTCTT ..................................... AACGCAAACAAAACCGGGGACACGATCGAATGCCGA 4329245 37 100.0 38 CGAATGCCGA ..................................... TGGCTTAATGTAGTATGTTGTGGCCACGACACAGCTTC 4329320 37 100.0 35 ACACAGCTTC ..................................... TATGGCATCAAGTTCATTGAGACTGAAGAAAGCTA 4329392 37 100.0 35 AAGAAAGCTA ..................................... CCATCAATAAAAGGCTTAAGTTTTCCTGCCAAGCC 4329464 37 100.0 35 CTGCCAAGCC ..................................... GCAACAATTTCAGAACGTCCTAGAGATTGGAGTGT 4329536 37 100.0 37 ATTGGAGTGT ..................................... ACATCTGCTATTGATCAATGGAGTGTTAACTGGATTT 4329610 37 100.0 52 AACTGGATTT ..................................... TGCGATCGCATAACAACAAAGGAAAAATTATGATTATGTGTTAACTGGATTT 4329699 37 100.0 36 AACTGGATTT ..................................... GAAAAAAACAACCACAGGAAAGATTTATATCAATCC 4329772 37 100.0 33 ATATCAATCC ..................................... GCAACCGTTACCAACGGGAAAGAATATTGGTAT 4329842 37 100.0 37 ATATTGGTAT ..................................... CATTTGTTTTGTCAAAGAACTTCAAAATGGACAAGCT 4329916 37 100.0 34 TGGACAAGCT ..................................... AAAGCCGAAGATGCCCAAGATTTTGTCGATAAAC 4329987 37 100.0 34 GTCGATAAAC ..................................... TTTTGATCGCGTACGAATCAAGGATATTATGGGC 4330058 37 100.0 36 TATTATGGGC ..................................... ACAAAACACAGGTGGGGGTGCAGGAAGCACAACAGA 4330131 37 100.0 36 GCACAACAGA ..................................... TGTGACGCAATCATTCAGAAAATCAAATCTATAGAG 4330204 37 100.0 37 ATCTATAGAG ..................................... AATACCTTAAATAATCCTTTGATTGATCCATCTAGTC 4330278 37 100.0 37 CCATCTAGTC ..................................... TAAAGAGAATAAGGACGATCCATCCAATCGGCTAAAT 4330352 37 100.0 34 TCGGCTAAAT ..................................... TTTTATGGCAACGGCTTTATCTTTTAAGGATAAA 4330423 37 100.0 36 TAAGGATAAA ..................................... AGTAACGGTGGTTTTGCCGTCTTCATCGGTAACAGT 4330496 37 100.0 35 CGGTAACAGT ..................................... CTAGACGTTACAGCGACATTCAACGAGCAGGGGAA 4330568 37 100.0 36 AGCAGGGGAA ..................................... ACCAATCCCCTCCCCAAGATATAGCAAAAATGGATC 4330641 37 100.0 36 AAAATGGATC ..................................... TTATTGTCTACCGTTACCTATGGAGATTGAGCTTAT 4330714 37 100.0 37 TTGAGCTTAT ..................................... GTAACGCTCCCCCAATTAATCCAGCCCCAACTGTAAT 4330788 37 100.0 35 CAACTGTAAT ..................................... CTTTAGCTGTTTTTGCAGGTCGTTTAACCGCTTTT 4330860 37 100.0 33 AACCGCTTTT ..................................... AAAGCCAGCCCAGTCTATCGAAGCTTAATCATT 4330930 37 100.0 32 CTTAATCATT ..................................... CTGTTGACGACGACCAACGCCGTCCAAATTGT 4330999 37 100.0 35 TCCAAATTGT ..................................... TAAAAATGATCTGTTGTTTCCCGTCCGGTCCACGA 4331071 37 100.0 35 CGGTCCACGA ..................................... AAACGCAATTTTAAGCCCTTGGGGACTATTGTCTA 4331143 37 100.0 37 CTATTGTCTA ..................................... ACTCAAGCCATTAGACCTGTGGGAATAATTGGGCAAA 4331217 37 100.0 38 ATTGGGCAAA ..................................... GGCGAAAATGAAGACGACGACGATGTGGTGACGGAAAT 4331292 37 100.0 TGACGGAAAT ..................................... TGCGATCGCG ========== ====== ====== ====== ========== ===================================== 39 37 35 GTTTCAATCCCATTGCTAGGATTCATTAATAAGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.40,-6.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [125,443] Score: 0.18/0.18 # # Final direction: R [0.27,5.05 Confidence: HIGH] >NC_011726 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 514094 37 100.0 36 TCCTTCAGGA ..................................... TTATCGTATGTCCTCTATTCCTATCTTATCTTTTTA 514167 37 100.0 35 TATCTTTTTA ..................................... ACGCAAACAAAACCGGGAACACAATGGAATGCCGA 514239 37 100.0 36 GGAATGCCGA ..................................... TAATGCTACTAATTCAAAGCTGACAGTAGAAGGCTC 514312 37 100.0 35 TAGAAGGCTC ..................................... CTGATTGTGATATGGTTGGTCAAATGATTAGCGAA 514384 37 100.0 37 GATTAGCGAA ..................................... TCTTGATTGCTGAAACTCTCCCGTTAACTGGATATAA 514458 37 100.0 35 CTGGATATAA ..................................... CGTTCGACGGTAGGAATAAAGACTAAAACCGTGAT 514530 37 100.0 36 AAACCGTGAT ..................................... GATCATAACAATGGATTGGCTTTAGTTGAAGGACTG 514603 37 100.0 35 TGAAGGACTG ..................................... GTTTATTCTATCCCCGTAACAGTTCCCCTCAAAAG 514675 37 100.0 CCCTCAAAAG ..................................... TGCGATCGCC ========== ====== ====== ====== ========== ===================================== 9 37 35 GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.27%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.40,-6.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [145,195] Score: 0/0.18 # # Final direction: R [0.27,4.87 Confidence: HIGH] >NC_011726 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 911959 37 100.0 37 AGCGATCGCA ..................................... CCGTTGGTTGCTTCTTCTAAGGGATCAATGGTTAGGG 912033 37 100.0 37 ATGGTTAGGG ..................................... TCGATCATCCCCTGAATTGATTTGACGCGGTTAATTT 912107 37 100.0 35 CGGTTAATTT ..................................... CTAAGCCAAAAAGGGACGGATTTAGAGGAATATTG 912179 37 100.0 38 AGGAATATTG ..................................... TCGTCGCCTGAATATCCCAGGGCTTTGATAGTTAAAGT 912254 37 100.0 34 TAGTTAAAGT ..................................... GGTTAGCTTGAAACTGAGCGGTTATTTTTAATAA 912325 37 100.0 39 TTTTTAATAA ..................................... TTTTGTATGCTTCTGCCTTTAATCCTAGGGTTTTAAGTT 912401 37 100.0 36 GTTTTAAGTT ..................................... ATCGTGACTTTTTCAGGCTTTTCATCTTTATCCTTG 912474 37 100.0 35 TTTATCCTTG ..................................... TCCAACTTTTTAAAAAATAGCTTGACAATTTGATT 912546 37 100.0 39 CAATTTGATT ..................................... ACTTTATGATTCCTTTACTTTAGATCATGTTGGTATTTC 912622 37 100.0 38 TTGGTATTTC ..................................... TCGTTCTTTCCAATGGGTCCGTAGCACTTCCCGCCGGG 912697 37 100.0 35 TCCCGCCGGG ..................................... TTGTTTTGTCTTCTCGTCGTCGTCGTCGTTCTTCC 912769 37 100.0 34 TCGTTCTTCC ..................................... TTTAAATGCTAAGCGATCGCATAGTTTTTTGTGC 912840 37 100.0 37 TTTTTTGTGC ..................................... AATTCTTGCAAACAAACAGTTAATTTTTTTACTGTCT 912914 37 100.0 TTTACTGTCT ..................................... TTTAATAAGTTTAAAACCCTATCAAGCCTTAAAC ========== ====== ====== ====== ========== ===================================== 14 37 36 GTTTCTTATTAATGAATCCTAGTAATGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.27%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.70,-3.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [248,291] Score: 0/0.18 # # Final direction: F [4.87,0.27 Confidence: HIGH] >NC_011729 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1894683 37 100.0 35 NNNNNNNNNN ..................................... GATATTTATGGTGGTCGGCACAGTTTTATGAACAA 1894755 37 100.0 34 NNNNNNNNNN ..................................... ATATTTTCAGAAAATCCCGATGAATTTTTCCCTC 1894826 37 100.0 39 NNNNNNNNNN ..................................... GTTGAATTAACTTATCCGCAAGCTTGCGGCAAAAATTTT 1894902 37 100.0 37 NNNNNNNNNN ..................................... TTAGCGATAGCGGTCAGGTTAGCCCGCCCTACCGATT 1894976 37 100.0 34 NNNNNNNNNN ..................................... AAAGTCCATTAAGCCCCCTGGTTGTTGACTTCAT 1895047 37 100.0 38 NNNNNNNNNN ..................................... CATCAGATCTTCGTCCAGATCCATGAATCCTCTCGAAT 1895122 37 100.0 35 NNNNNNNNNN ..................................... CTAGAATTGGATATTCTCGCCTAGAGGAAACTTTC 1895194 37 100.0 37 NNNNNNNNNN ..................................... TTCTCAATTTCATACTGATACTATCAAGAAACAATCT 1895268 37 100.0 35 NNNNNNNNNN ..................................... ACTAAGCTAATTTTTTTGTTAGTGCCTGGCTTCTG 1895340 37 100.0 34 NNNNNNNNNN ..................................... GTTTCGCACTGTTCGGTCGGTGCGTTTGATCCTT 1895411 37 100.0 34 NNNNNNNNNN ..................................... GTTTTATTTTTTCTTGTTGGATTTTTTAATAATT 1895482 37 100.0 33 NNNNNNNNNN ..................................... CCTTCGGTTGTCCCTCTCCCGGATATTGCTAAA 1895552 37 100.0 39 NNNNNNNNNN ..................................... TCGGACAGTTAGATTCAGCAGAAGGAAGAGGAGCAGCAA 1895628 37 100.0 39 NNNNNNNNNN ..................................... TCTACTAAGATGTTCCGTCACGTTGTCTTGGCAAACGTC 1895704 37 100.0 33 NNNNNNNNNN ..................................... TTTAGATTATTGATGCGCGGACTGGGAGCAACG 1895774 37 100.0 35 NNNNNNNNNN ..................................... CTTTTATCGCGTTCCCTCGGTTGTACCTGTTCCGG 1895846 37 100.0 35 NNNNNNNNNN ..................................... CCTGATTTTCTGGTGTGAATGTTCGTGGAACTTGA 1895918 37 100.0 37 NNNNNNNNNN ..................................... TACGCTCCTTACGATCCTTCTGGGAGATTTCAGCAAG 1895992 37 100.0 38 NNNNNNNNNN ..................................... ACCGAGCGGACTTATGCGATCGTGCCTCGAATCTCTAG 1896067 37 100.0 38 NNNNNNNNNN ..................................... TGTCGAGATTTTGCTGTCCGAGATCAGCATCAAAAACA 1896142 37 100.0 36 NNNNNNNNNN ..................................... ACCGGATTAAACAGAGACACGATTCTCGACCTCAGA 1896215 37 100.0 37 NNNNNNNNNN ..................................... TAGGTATTATGAGAGTGGCAACCTTCGAGGGTCTTGG 1896289 37 100.0 34 NNNNNNNNNN ..................................... AACAAAATAACAAAGAATAATAAAAAATATCTAG 1896360 37 100.0 34 NNNNNNNNNN ..................................... TTCGATTAGTGGGAGAAACCTCTCAGACTATAAC 1896431 37 100.0 33 NNNNNNNNNN ..................................... TTTTTGCCCTTCTACCGTGAAGGTATGCCCTAC 1896501 37 100.0 39 NNNNNNNNNN ..................................... CCTACTGGCTTGGTAGCGGCAAAAGGAAAACAGCACAAT 1896577 37 100.0 33 NNNNNNNNNN ..................................... GGCAAAGGCAAGCATTCATGGACTACCTCGGCT 1896647 37 100.0 34 NNNNNNNNNN ..................................... TAAACAATAGTGTAATTCTAGATATTTATTAAGA 1896718 37 100.0 36 NNNNNNNNNN ..................................... ATTTGATTCGGTGGTTTTTTGTGTATCAATAAGGCA 1896791 37 100.0 36 NNNNNNNNNN ..................................... AAAGACGTTAAGCCAGCCCGACTCAGAAAAAAAGAA 1896864 37 100.0 36 NNNNNNNNNN ..................................... GTTTGAGGGAGCGATCGTGATCGATACGCGCCATTG 1896937 37 100.0 34 NNNNNNNNNN ..................................... ACTTCCTGTAGGGAGGGCTTGCCAATGATGGGTT 1897008 37 100.0 36 NNNNNNNNNN ..................................... ACTAATATTGATGGGACGGACAGCTTTGATCTTTTT 1897081 37 100.0 39 NNNNNNNNNN ..................................... TTTGAATTGTGGCTTAATTTAGCCGTTTTGTCAGGCGCG 1897157 37 100.0 34 NNNNNNNNNN ..................................... CGGACGATTTAATCGCATTAAGTACGCATGAAAA 1897228 37 100.0 33 NNNNNNNNNN ..................................... CGATTTAATAATTGTTCTTTGTCGATACCGTTG 1897298 37 100.0 36 NNNNNNNNNN ..................................... TTGACATGATAATCTAATAAGGATATGATAATAATC 1897371 37 100.0 37 NNNNNNNNNN ..................................... ACGAGTTAAAGATACACAAATGAAAGAATTTTTAAGC 1897445 37 100.0 36 NNNNNNNNNN ..................................... CCTTCAGGTTATTTAAATGCCTATCTTCGATTAGAA 1897518 37 100.0 34 NNNNNNNNNN ..................................... CGATGTAACTTCTCTCCAATTAATAAACTTTAAT 1897589 37 100.0 37 NNNNNNNNNN ..................................... CATCTCTTTCCAATAGATTTGCCAAAAAGGAGGATAG 1897663 37 100.0 36 NNNNNNNNNN ..................................... TCGTCCCTGTGAAGCCTTGCCCCTTAATTGGGAAGA 1897736 37 100.0 34 NNNNNNNNNN ..................................... ATCGGGAGTCGTCAAAGTACATCAGGTTGTATAA 1897807 37 100.0 38 NNNNNNNNNN ..................................... AATAATTAGCTCTAATTTAGAGGATAATTCTTGTTGAC 1897882 37 100.0 37 NNNNNNNNNN ..................................... TTCCCCCTGGTTATTTCTCATGAGCGTTATTCCTGGA 1897956 37 100.0 36 NNNNNNNNNN ..................................... GAATAACAGAGGCTAGAATTCTTTCTGGTATTGGGG 1898029 37 100.0 37 NNNNNNNNNN ..................................... ATTGCAACTCAAACAACTATAGATTCTTTAAGCGGGA 1898103 37 100.0 36 NNNNNNNNNN ..................................... GAATCGCTGGAGGATTTCCTCCTAAATCTGCTTTGT 1898176 37 100.0 39 NNNNNNNNNN ..................................... GTTCAATAGGCCGATCGCTCTCGCTCATATACGATTTAA 1898252 37 100.0 39 NNNNNNNNNN ..................................... TGAGTTAAAAGCATATCCTTGAAACTAAATCATTTACCA 1898328 37 100.0 35 NNNNNNNNNN ..................................... TTTGTATCGGCGCTTTTGCGGAACCTGCCGACAAT 1898400 37 100.0 33 NNNNNNNNNN ..................................... ATCAACCAGCACCGACACCAAGGGAAAACGTTG 1898470 37 100.0 36 NNNNNNNNNN ..................................... GCCCAATTCACGCTAGATCGCGCTGTAGATACCATT 1898543 37 100.0 37 NNNNNNNNNN ..................................... CTATCGATCGCCAGCGCCCGAAGCACTGACATTAACT 1898617 37 100.0 36 NNNNNNNNNN ..................................... GAAAGAATAGATCAGATATATCTATTGTCATTTTGA 1898690 37 100.0 34 NNNNNNNNNN ..................................... GAGATTCCAGGGGCTAAATTTTTTAGGGCTTATG 1898761 37 100.0 35 NNNNNNNNNN ..................................... ATAGACGGGGTTCGACTCGTTGATAAAACACAATA 1898833 37 100.0 32 NNNNNNNNNN ..................................... TCACGTTAAAGCCGTTGGGGAACGCCTTGGGA 1898902 37 100.0 36 NNNNNNNNNN ..................................... GAGACTCCTTCCCTTAACCTCTACGACGCGGGAACG 1898975 37 100.0 36 NNNNNNNNNN ..................................... GCAAAAGATTCGAGAAGAAATTGCTAAATTAAGAGA 1899048 37 100.0 36 NNNNNNNNNN ..................................... GAAATTTCTCATCTGACAGGGTATTCCGCCCTGGCA 1899121 37 100.0 37 NNNNNNNNNN ..................................... TTTCTACAGCACAGCTAACAACCAAGAACAATTTATA 1899195 37 100.0 36 NNNNNNNNNN ..................................... ATATACTTTCTCGATCCGATTACGCTTGAGACATTC 1899268 37 100.0 37 NNNNNNNNNN ..................................... TGATTTAGAAAAAGAATATAAGTCCAACAAGCATTTT 1899342 37 100.0 37 NNNNNNNNNN ..................................... GTTTCAAGCGATTAATTAAGCTTTTATCGGAATCATT 1899416 37 100.0 37 NNNNNNNNNN ..................................... ATAAGCATTTCCTCCAACAATTCCCCAATCAAGAAGT 1899490 37 100.0 35 NNNNNNNNNN ..................................... TTGATTGAGTGCTGTGTATCCATTGCCTCCTTCAA 1899562 37 100.0 35 NNNNNNNNNN ..................................... GCTTCGGCAACCGTTGGGCTGTACGCTCGATTCCC 1899634 37 100.0 38 NNNNNNNNNN ..................................... TTGGTATCAGACGCACTATTCCGATAAGTTGTCATTAG 1899709 37 100.0 35 NNNNNNNNNN ..................................... CGGCAGCAACAATTGACGGGACAGATCTGGACGAT 1899781 37 100.0 37 NNNNNNNNNN ..................................... ATTCCTCCTAGAGCGCTTTGCAGGGGAAGGGTTGAGT 1899855 37 100.0 34 NNNNNNNNNN ..................................... CCGAGCGCCCCCAACAAAAGGAAGCGAGTCTATC 1899926 37 100.0 35 NNNNNNNNNN ..................................... GAGAGCATTTCTCATCTCCAATGACTCGCTTTAGC 1899998 37 100.0 36 NNNNNNNNNN ..................................... TTGAGGAATATTGCTGATGGGATGCGGAAATTTTTG 1900071 37 100.0 38 NNNNNNNNNN ..................................... TTTCTTCTTCTGTAAATTTTTGGGCAGTCGTCCAGCGT 1900146 37 100.0 35 NNNNNNNNNN ....................................T GATCCAGATAAGCTTAAACCTAAATTTTGGGCTTG 1900218 37 100.0 33 NNNNNNNNNN ..................................... TTGATAATTTAGACAAAGTTGGGCTATTCTTGA 1900288 37 100.0 35 NNNNNNNNNN ..................................... TAGACTGGCCTCAGTTTTTCTCTGATTTGTGGAAC 1900360 37 100.0 34 NNNNNNNNNN ..................................... AAATTTATGCGTATAAATCAATTTCATATCAAGT 1900431 37 100.0 38 NNNNNNNNNN ..................................... AACAAACTCTAGCCCTTGAACGCATCGCCACCGCAATA 1900506 37 100.0 35 NNNNNNNNNN ..................................... TTGGCGGTAAAAGTACAGTAGTATCTGGCGTTCCC 1900578 37 100.0 34 NNNNNNNNNN ..................................... GTGAACAGCCTTTCTGGGACGAGGATAATATTAG 1900649 37 100.0 39 NNNNNNNNNN ..................................... AGAGCGCTTGGGGAGGGGGCGCCCGCAGATCCGCGCAAG 1900725 37 100.0 34 NNNNNNNNNN ..................................... TGATGCCAAATTGGCGACAGCTTATCGTAAATGG 1900796 37 100.0 37 NNNNNNNNNN ..................................... TTAATTTCCTTAAAGTCAGCCCAACTTAACCCTACTC 1900870 37 100.0 38 NNNNNNNNNN ..................................... ATCTATAGTCTGCTTATTAAACCTTATAAATGAGATAA 1900945 37 100.0 36 NNNNNNNNNN ..................................... ATTCTGGATCGGGGTTCGGGTGTAACCCCCCGCTTC 1901018 37 100.0 36 NNNNNNNNNN ..................................... TAGACCCACCGTTCTTTGTCTGTTTTTCTCCTGAAG 1901091 37 100.0 36 NNNNNNNNNN ..................................... ACGAGAGAATCGATAAACTCTCGCTTTTCTTGAGGA 1901164 37 100.0 36 NNNNNNNNNN ..................................... TTCAATTGATCTAACTCAGAAGAGGGGGCGTAATGC 1901237 37 100.0 37 NNNNNNNNNN ..................................... ACATTCTTCTTACTGGTTTTCTGGCGGCTACTGTTTT 1901311 37 100.0 37 NNNNNNNNNN ..................................... CGGAATTAGCTATTGATGAGGCTAACCGACCCGCTCG 1901385 37 100.0 39 NNNNNNNNNN ..................................... CAAATAGGTTTAGCTGTCGTCAGTTATTATTGGGGGAAA 1901461 37 100.0 34 NNNNNNNNNN ..................................... GTAAAGGTTCGGATGAGCAGGATTTATTAAGTAT 1901532 37 100.0 34 NNNNNNNNNN ..................................... TATTACGTTCCTGAACAGGAATGAGCCAAAAACT 1901603 37 100.0 34 NNNNNNNNNN ..................................... ATGGCCATTGAGGCACTATATCTAGGGAATTAAG 1901674 37 100.0 36 NNNNNNNNNN ..................................... ACTTCAATTATAGGTATTCCTCCTATTTCTTGCGAT 1901747 37 100.0 37 NNNNNNNNNN ..................................... TTAACCGAATAACTTCGGTTACTCCCTCAGACGGATT 1901821 37 100.0 36 NNNNNNNNNN ..................................... ATCTTCCAATTCTAATCGATGGTCAAAATGTCAATG 1901894 37 100.0 36 NNNNNNNNNN ..................................... ATGGATTCGATACTTATGAACATTGGGAATACTGGG 1901967 37 100.0 36 NNNNNNNNNN ..................................... ATCGTTGGGTGAGTTGTTATAGATCGCCCAACGCTT 1902040 37 100.0 35 NNNNNNNNNN ..................................... GATCCGCCTGAATGGCAGCATATCAACCGAAATAA 1902112 37 100.0 35 NNNNNNNNNN ..................................... TCGAAAGAATCCAACATTTAAAGATATTTGCCAAA 1902184 37 100.0 38 NNNNNNNNNN ..................................... CATATCCGCTATTTTTCGGGTGTTTATTCGGAATTTTC 1902259 37 100.0 38 NNNNNNNNNN ..................................... GATATGCGCAGGCTTTTTCTAGCTCCTGCCCTGTTATG 1902334 37 100.0 35 NNNNNNNNNN ..................................... TTGCCGAGATATGGGCTATTATTGGCTATGTTCAC 1902406 37 100.0 37 NNNNNNNNNN ..................................... GTATCGGGCCAGATCCAGTTCTGGGCAAATTTTCCCT 1902480 37 100.0 36 NNNNNNNNNN ..................................... AGAAAGGAGATACCGAGATCGTCGGCGAGTTGCCGC 1902553 37 100.0 34 NNNNNNNNNN ..................................... TGGAAAAATTGCGATAGTTAAAATAAACCTTCAA 1902624 37 100.0 34 NNNNNNNNNN ..................................... TTGCTGCCGTTATCGTTCGCGTAGTTGACGTAAT 1902695 37 100.0 36 NNNNNNNNNN ..................................... CTATAATTCCCCCCACCTTGATCCCAGGATCTAAAA 1902768 37 100.0 34 NNNNNNNNNN ..................................... TTAATATTGATGTATATGTGTTATTTGCAAAGGT 1902839 37 100.0 36 NNNNNNNNNN ..................................... TTTAAATTTGCTAATTCTTCTCCTTGCAGAATAATA 1902912 37 100.0 35 NNNNNNNNNN ..................................... CAACTCAAAAGATACCCGATACGTTGTTCAATACA 1902984 37 100.0 37 NNNNNNNNNN ..................................... TTATTACTTCCTGTAAATTTAAGATGAATCTTTTTAG 1903058 37 100.0 37 NNNNNNNNNN ..................................... ATATCTCATTATAACAATGCCGAGATATCTTGCCTGA 1903132 37 100.0 34 NNNNNNNNNN ..................................... TAATGGAGAAAGCGCATGGCTACCATTATTCTAC 1903203 37 100.0 37 NNNNNNNNNN ..................................... AATTAATTGAATCCAATCAATCCCTTTTAGATGCCTC 1903277 37 100.0 37 NNNNNNNNNN ..................................... AGACATAAAAGAATTGTTTTTAAATCGACTAAAAATT 1903351 37 100.0 37 NNNNNNNNNN ..................................... CCATGAACATTCGCACCAGAAAATAAAACACCAAGCT 1903425 37 100.0 37 NNNNNNNNNN ..................................... ATCGTAATGGCTGAGGAATTGTTAGAGCAAGGGCAGT 1903499 37 100.0 37 NNNNNNNNNN ..................................... CTTTAAATTCCCCTTCGGAGTATCTCGAATAATCAGG 1903573 37 100.0 36 NNNNNNNNNN ..................................... AAGGAACGAGCATTAACCCATAATTTTGCTGATATA 1903646 37 100.0 35 NNNNNNNNNN ..................................... ATTGGACTTGAATCGAAAAGCGCCGCAAACCCGAC 1903718 37 100.0 36 NNNNNNNNNN ..................................... CTTCTAATACCACTTGGTTAAATATGTCTACGGATC 1903791 37 100.0 37 NNNNNNNNNN ..................................... TAATAAGCCTAATTCCCATTACGATAGGCTAATTTCT 1903865 37 100.0 35 NNNNNNNNNN ..................................... ACGATCGCTTCTGCCCCCTCATCAACTTCCCCTAA 1903937 37 100.0 33 NNNNNNNNNN ..................................... CTAAAAGGGAAGCGCAAGACCCTAAAGGGCATT 1904007 37 100.0 37 NNNNNNNNNN ..................................... AATCTAAAGTAGGTATTAAATGTTTTGCTATTAATAC 1904081 37 100.0 37 NNNNNNNNNN ..................................... AAATTTAACAATTACATTGTAGTATGTAATCCCTATG 1904155 37 100.0 31 NNNNNNNNNN ..................................... TTGACATTCACGGTGAGGGGCAATCCTCACT 1904223 37 100.0 35 NNNNNNNNNN ..................................... CGTCAATTTGGAACGATTTTATCGATAAGACAAGA 1904295 37 100.0 32 NNNNNNNNNN ..................................... CAGGGAAAAGCTTTCTATCTTAGAGACTAAAA 1904364 37 100.0 1 NNNNNNNNNN ..................................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 134 37 35 CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.40,-3.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [53.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [244,120] Score: 0.18/0.18 # # Final direction: F [5.05,0.27 Confidence: HIGH] >NC_011729 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2726175 29 100.0 32 TCCTGGAAGT ............................. TCAGTTAGAAGGATTTTTCCTTTGTGTACAAG 2726236 29 100.0 32 TGTGTACAAG ............................. ATTTTTTGAATTTTGGATAGGCGTACCGTTAG 2726297 29 100.0 33 GTACCGTTAG ............................. TTCTCTTTGTAATCTGTGTCCAGTCATCCCATA 2726359 29 100.0 32 TCATCCCATA ............................. ATAAACGAACTACAGGTCGATTCCATATTAAA 2726420 29 100.0 32 CCATATTAAA ............................. GAAACAAGTACAATGGTACAAAAAGAAACAGA 2726481 29 100.0 33 AAGAAACAGA ............................. GCATCGGCTCTTTTGCAGTCTTCCCAGACCGCC 2726543 29 100.0 32 CCAGACCGCC ............................. AACTGAGTAAAACTTTTTCCTCTAAGCTAACC 2726604 29 100.0 32 TAAGCTAACC ............................. TCGTCCTTTTTTGGAGTCCTTGGGGGCGACTG 2726665 29 100.0 32 GGGGCGACTG ............................. ATCGATTTCATCGCGTCTTATATGGAGGATAG 2726726 29 100.0 32 TGGAGGATAG ............................. GCGGCCTATGGCGGGAAGCTGCGCCTCGAGTC 2726787 29 100.0 32 GCCTCGAGTC ............................. ACAAAAAAGGACAAATCACGAAAAGTAAGTCC 2726848 29 100.0 32 AAGTAAGTCC ............................. GATTTTCGCCTACTCGTCCCTCTCAAGGCTTC 2726909 29 100.0 32 TCAAGGCTTC ............................. GATACCCTCAAGAGTTTTCGCCATCGTCTCTA 2726970 29 100.0 33 ATCGTCTCTA ............................. GAGAGTAAGGAGAGTCTGGATCTGGATAAAAAC 2727032 29 100.0 33 GGATAAAAAC ............................. ACTTTTTGCCCAATTTGCTCTCAAAGAATGCGC 2727094 29 100.0 32 AAGAATGCGC ............................. TTACCTAAATCAAACAAATCGATTCGTACTTA 2727155 29 100.0 32 TTCGTACTTA ............................. TTACCCGGTGGGGGAAATTGGTTCTTCATTCC 2727216 29 100.0 32 TCTTCATTCC ............................. AATGACGATTTGCCGATGTCTCAAGCCGAGAA 2727277 29 100.0 32 AAGCCGAGAA ............................. TTAACTATTTTTTTGATTTGAGGAGAAAAAAA 2727338 29 100.0 32 GAGAAAAAAA ............................. ATTATCGCTCCTGCGTTCAAGGAAAAATTTAA 2727399 29 100.0 33 AAAAATTTAA ............................. AGATCGAAAGCACGATCGCTCAACTGCAACTTC 2727461 29 100.0 32 CTGCAACTTC ............................. TTAAAGCTTGATGATAAGCTTGAGATCCAGTG 2727522 29 100.0 32 AGATCCAGTG ............................. CTAATCTACGGGATAAACGAGATAAGAAAAAC 2727583 29 100.0 32 TAAGAAAAAC ............................. CTTGTCCATTAGCCAACTCTTTAAGCCACTTA 2727644 29 100.0 32 AAGCCACTTA ............................. TAAAGAGGATATGAAAAAACGCAACTTAGAAT 2727705 29 100.0 AACTTAGAAT ............................. AATGAGGCAC ========== ====== ====== ====== ========== ============================= 26 29 32 GTATTCCCCATGCTTGTGGGGGTGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-9.10,-7.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [15,3262] Score: 0.18/0.18 # # Final direction: F [0.64,0.55 Confidence: LOW] >NC_011729 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2727827 29 100.0 32 TTTACAATAC ............................. AAGAAACTCTACAGATACAACAAGCCAAAACA 2727888 29 96.6 32 AGCCAAAACA ............................A GATACGACGTTATCTTTATCAATTTCCCATAC 2727949 29 100.0 32 TTTCCCATAC ............................. TTGCCCAAATGCGTTTAAATTAATTCCTCATA 2728010 29 100.0 31 ATTCCTCATA ............................. GTCTAGTTTTTCGTCAATGTAGAGGTTTGTC 2728070 29 100.0 33 GAGGTTTGTC ............................. AAAAAATTGAGGTCTTCATAAGGTTAAAAAAAA 2728132 29 100.0 32 TTAAAAAAAA ............................. CAATTTAATTTCGCTATCACCTCAATTACAAG 2728193 29 100.0 32 CAATTACAAG ............................. TTATCAGATACAATCGGATGATGACAGTATAG 2728254 29 100.0 32 GACAGTATAG ............................. GAGACAATCACCAATGCCCTCGCTAGGATTTT 2728315 29 100.0 32 CTAGGATTTT ............................. AAGGATATAATTTTCAACTCTACACCTATAAC 2728376 29 100.0 32 CACCTATAAC ............................. ATGACCCCATGCGATCGCCCTTGCCCGATCGC 2728437 29 100.0 32 GCCCGATCGC ............................. ACTTGATGATTTTTGCTCAATACCTGTCTTTA 2728498 29 100.0 32 CCTGTCTTTA ............................. AGGAAATGAAACTTGCTGAAGAGCTTTTTAAA 2728559 29 100.0 32 GCTTTTTAAA ............................. ATGGGTTTTTAGGATCGTCCCACCCATCCCAA 2728620 29 100.0 32 CCCATCCCAA ............................. TTTGCCCGACTTAAAAATATTGAATAGCCCTC 2728681 29 100.0 32 AATAGCCCTC ............................. GTGGATTTGGTTAGGGAAAATAAAAGGGGTCT 2728742 29 100.0 32 AAAGGGGTCT ............................. TTTGGATCAATACGAGTTTAGGGGAAACTTTT 2728803 29 100.0 33 GGAAACTTTT ............................. GACTACACATGGATGCACAAACATTCATTGTTC 2728865 29 100.0 34 TTCATTGTTC ............................. AAGTAAACCTAAAGAGGGCGAGAAAAAACAAGAG 2728928 29 100.0 33 AAAACAAGAG ............................. ATGTTTAGTTCGTGTAAATCAATTGTTTTTCGC 2728990 29 100.0 32 TGTTTTTCGC ............................. CAATGGAACGGCAGCGAGTGGGTAGAGGTTGC 2729051 29 100.0 32 TAGAGGTTGC ............................. AAACATTCCCAATCCCTAGACTAGAAAATGAA 2729112 29 100.0 32 AGAAAATGAA ............................. AGTTGGGATATACCGACGAGCAAATAGGGGAC 2729173 29 100.0 32 AATAGGGGAC ............................. TTAGTTTTTCCTTTTTCTATGACTGATTGGTG 2729234 29 100.0 32 CTGATTGGTG ............................. GTTGAAGTTGAGGAGTGGTTGAGTCAAGTCCA 2729295 29 96.6 32 GTCAAGTCCA ............................T AAGAATGGGACCACTCATTACCATCAGTCAAA 2729356 29 100.0 32 ATCAGTCAAA ............................. GAGTGGCATAAAAATTTTTTTGGGTTGTTTCA 2729417 29 100.0 337 GGTTGTTTCA ............................. ATCGAAAATGCGATCGCAATCAAGGAAAAATGGTATTCCCCATGCTTGTGGGGGTGAACCGCAATAGATCGGGTTTTCCTATTTTTTTTATCCGTATTCCCCATGCTTGTGGGGGTGAACCGATCGAGATGCAAAGCTTCCCTCGGCGACGGGCGTATTCCCCATGCTTGTGGGGGTGAACCGATAAAGACGCGATCGCTCTCATTCAATCTGAAGTATTCCCCATGCTTGTGGGGGTGAACCGATAGTTGTCGCTTCCTGCTTATACAGCTTCCAGTATTCCCCATGCTTGTGGGGGTGAACCGAATACCTGCTCTTTATCGACGTACCACTTATA 2729783 29 100.0 ACCACTTATA ............................. TAGAGCATTT ========== ====== ====== ====== ========== ============================= 28 29 43 GTATTCCCCATGCTTGTGGGGGTGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-9.10,-7.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [1667,1184] Score: 0/0.18 # # Final direction: R [0.37,0.64 Confidence: LOW] >NC_011729 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2729478 29 100.0 32 AGGAAAAATG ............................. CAATAGATCGGGTTTTCCTATTTTTTTTATCC 2729539 29 100.0 32 TTTTTTATCC ............................. ATCGAGATGCAAAGCTTCCCTCGGCGACGGGC 2729600 29 100.0 32 GGCGACGGGC ............................. ATAAAGACGCGATCGCTCTCATTCAATCTGAA 2729661 29 100.0 32 TCAATCTGAA ............................. ATAGTTGTCGCTTCCTGCTTATACAGCTTCCA 2729722 29 100.0 32 ACAGCTTCCA ............................. AATACCTGCTCTTTATCGACGTACCACTTATA 2729783 29 100.0 ACCACTTATA ............................. TAGAGCATTT ========== ====== ====== ====== ========== ============================= 6 29 32 GTATTCCCCATGCTTGTGGGGGTGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-9.10,-7.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [3318,1184] Score: 0.18/0.18 # # Final direction: R [0.55,0.64 Confidence: LOW] >NC_011729 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2841764 37 100.0 33 ATATATTATT ..................................... GAGAAGAATATTTTTCTGAACTGAAGAAAACCA 2841834 37 100.0 35 AAGAAAACCA ..................................... ATACGATAAACAGCGCGATCGAGCTTGCTAATTTC 2841906 37 100.0 34 TGCTAATTTC ..................................... TAAAAAATTTCTAGACAGTCTCATCATGAGAATT 2841977 37 100.0 35 CATGAGAATT ..................................... GTGACAACGATCGGCGATCCCCAATCCTCTCTAAC 2842049 37 100.0 35 CCTCTCTAAC ..................................... CTAAGTGTCATTATCGACCCCATGTAATAGGAGGT 2842121 37 100.0 35 AATAGGAGGT ..................................... ACTAATCCTGAAGATGGAGAAAACATATGACTTGT 2842193 37 100.0 35 TATGACTTGT ..................................... CTAGCCTCCTTAATTAAAATTTCTTGGCTAAATTA 2842265 37 100.0 34 GGCTAAATTA ..................................... TTTTAGGGGGGCCGAATTTAAATTAATTAATATT 2842336 37 100.0 38 AATTAATATT ..................................... ATAGGCTAATTCTGCCACAACAAAATCATCATCTATCT 2842411 37 100.0 35 TCATCTATCT ..................................... ATCTTCCTTAACATAAATCATGAATTGACCTTGAT 2842483 37 100.0 36 TGACCTTGAT ..................................... CTATGCCTCTTAGAGGAATAACAGATTGATCGGGCT 2842556 37 100.0 38 TGATCGGGCT ..................................... ATCCCTTGAGTAGGGGTGAGCGGTGGGTCAGTATTTGT 2842631 37 100.0 36 CAGTATTTGT ..................................... GGTAGGGAAATTTAGTTAAGATCAATGAAACATTTT 2842704 37 100.0 36 GAAACATTTT ..................................... ATGAAAAATATGGGCAGGTAGCTATTGTTAAAATGC 2842777 37 100.0 35 GTTAAAATGC ..................................... AACTTTATTTGATAAAGATTTAAACAATAACAACA 2842849 37 100.0 34 AATAACAACA ..................................... ATAAACTAAGAAAACCAGACGGTACATTACCATT 2842920 37 97.3 35 CATTACCATT ............................C........ CTTGCCCTTTAGTTTGCGAGGGAACTGTGTGTTGC 2842992 37 100.0 37 TGTGTGTTGC ..................................... CAGAAGGTCCGCCGGGTCCACCTGGGCAACCAGGCCC 2843066 37 100.0 34 AACCAGGCCC ..................................... TTTGGGCTGTTGTAATTATCGGATTAGGTGCATT 2843137 37 100.0 38 TAGGTGCATT ..................................... GTTGTCCAGGGTGAAGCTATGGACAGTGGGGACAAGGC 2843212 37 100.0 35 GGGACAAGGC ..................................... CAGAAGCGGTTTTCTTAAAGAGTGGCTGTATTCGC 2843284 37 100.0 34 CTGTATTCGC ..................................... CAAAGTATTCAAGTCAGGTGGAAGGTTTTGGAAA 2843355 37 100.0 35 GTTTTGGAAA ..................................... AGACCATTATGTCAAGAGCCGAGAAGATCTGGCTC 2843427 37 100.0 35 GATCTGGCTC ..................................... TCTCAGGCATTGCACAAATGTAAACGAAAATGGGA 2843499 37 100.0 36 GAAAATGGGA ..................................... TAGCTTGGCTTAACCTAAACAGACCATAGATAAATA 2843572 37 100.0 37 TAGATAAATA ..................................... AAATCCAGAGGCCGCTAAGGAATACGATAGAAAAAAA 2843646 37 100.0 36 TAGAAAAAAA ..................................... CCTATCTTTTATTTCAAATTTAACTATTGACTTATA 2843719 37 100.0 39 TTGACTTATA ..................................... TCAACGTCTTTCTCTATATTGTCCTGCCATTTTTCCTCG 2843795 37 100.0 36 TTTTTCCTCG ..................................... AAGAAAGTATCGGACCCTTATCAAAATTCAAATGAT 2843868 37 100.0 36 TTCAAATGAT ..................................... CGATAAAGATATTTCAGATTGGCTAAAGACTGATGA 2843941 37 100.0 36 AGACTGATGA ..................................... TAGCAATAATTTGCGCCCGATTGGTTAAATAGGTTT 2844014 37 100.0 39 AAATAGGTTT ..................................... TGCCGCACAAGTCGAGGCGATCTATTCTAATTTAGGAGA 2844090 37 100.0 37 ATTTAGGAGA ..................................... GATCGTAGAGCTATTATGGACATAATGTATTCCAGGA 2844164 37 100.0 36 TATTCCAGGA ..................................... ATCGTAGAGCTATTATGGACATAATGTATTCCAGGA 2844237 37 100.0 38 TATTCCAGGA ..................................... AAATCTGTGGGGTTTTCTTCTCGATGTAGTTCTAAGGC 2844312 37 100.0 37 GTTCTAAGGC ..................................... TTGTAGAGCATTCCGTTCCGACTCCCCAAAATTGGCA 2844386 37 100.0 37 AAAATTGGCA ..................................... GATCGATTCTTGATATTTTGATTTTAGGATAAAAATT 2844460 37 100.0 GATAAAAATT ..................................... GCTGACACCC ========== ====== ====== ====== ========== ===================================== 38 37 35 GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.16%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.40,-8.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [121,232] Score: 0/0.18 # # Final direction: R [0.27,4.87 Confidence: HIGH] >NC_011729 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3575124 37 100.0 33 ACAGCCGGCG ..................................... AAAACTGGGGACTAGATTTAAATAGAGATGGAG 3575194 37 100.0 45 AGAGATGGAG ..................................... AACGAACTGAGCTTAATTCCTTCTGCTTCGACCGGAGCTAATAGC 3575276 37 100.0 33 AGCTAATAGC ..................................... GTCGTTCCTGGAGGCATAAATAAACCCGGTGGA 3575346 37 100.0 36 ACCCGGTGGA ..................................... CAAGTATCTCCCCCTACATCAATAAATTCTAATCTA 3575419 37 100.0 35 TTCTAATCTA ..................................... GGCTACATCCTCAGCAACCGCTACGCCTGCGCCCC 3575491 37 100.0 35 CCTGCGCCCC ..................................... TTTTCTCCTAAAATATTGTAAGCAATTTTATAGGC 3575563 37 100.0 34 TTTTATAGGC ..................................... CAGTGTCAAATAACAATGACGCATAATATTTTCC 3575634 37 100.0 35 AATATTTTCC ..................................... GAGCCTCTTGGCAATTTCAAAAAGCGACTCGACCT 3575706 37 100.0 GACTCGACCT ..................................... GAAAAATATT ========== ====== ====== ====== ========== ===================================== 9 37 35 GTTACAATTAAAATGAATCCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.27%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.50,-7.40] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [272,657] Score: 0.18/0.18 # # Final direction: F [4.5,0.45 Confidence: HIGH] >NC_011740 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 311193 29 100.0 32 TATGTTTAGA ............................. TTTTCGAAACCGGCACCCCCTGCGCCTCCGTC 311254 29 100.0 32 CGCCTCCGTC ............................. GAATAAATGATCATGACACAGCGTTGCACAAT 311315 29 100.0 32 GTTGCACAAT ............................. GTCCTACCTGTTGGCGATTTCAGCATCATCAT 311376 29 100.0 32 GCATCATCAT ............................. TGATCCGGGTGTCTAACGAACTGCTGAGCGAT 311437 29 100.0 32 GCTGAGCGAT ............................. TTGCAAAGTGGAACTCGGCGCAGAACGTTATG 311498 29 100.0 32 GAACGTTATG ............................. CCCGCCGCACCGGATTCCTGAACTAACTTCTT 311559 29 100.0 32 CTAACTTCTT ............................. CTACAAAAAACCCATCAGGCAATTCAACGGCA 311620 29 100.0 32 TTCAACGGCA ............................. GGGTATTTTGGTATTTTGCCTGGCGCTAAAAC 311681 29 100.0 32 GCGCTAAAAC ............................. TTGGCGCGGATCTACAACCCTGACTGACGGGG 311742 29 100.0 32 ACTGACGGGG ............................. AGTGAGCCAGCCTGGATTGTTGAGGCGCGTAA 311803 29 100.0 32 AGGCGCGTAA ............................. GCTGAAAAATTGGGGCATGAACTGGATGTTGC 311864 29 100.0 32 TGGATGTTGC ............................. ACGGCGCATTTTTGAGTTCCGTGTACTGCTCG 311925 29 100.0 32 GTACTGCTCG ............................. GCCTTGGATACGGGCAGGGCGTCCGACTGGTC 311986 29 100.0 32 CCGACTGGTC ............................. AAATTTCATAACGTCAATTTCGACGGCTGCGG 312047 29 96.6 32 ACGGCTGCGG .........A................... TTGGCGAGATTGTTAACGTTGCGATGTCTCAA 312108 29 93.1 GATGTCTCAA ................T.A.......... GCTTCAGATA ========== ====== ====== ====== ========== ============================= 16 29 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,3] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-13.40,-12.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [340,127] Score: 0.18/0.18 # # Final direction: F [2.1,0 Confidence: HIGH] >NC_011729 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3796369 36 94.4 37 CCATAAAGCC .........T.T........................ TTCAGACGATATGGAAGAAACATCAATTAAAGAACTG 3796442 36 100.0 34 TAAAGAACTG .................................... TGGCTTTCAAGAATTGCCATGCTGTATTTGTCAC 3796512 36 100.0 36 TATTTGTCAC .................................... ATGGGGAGAAAAATCCCCAGAAACCCAAACTTTTTT 3796584 36 100.0 43 AAACTTTTTT .................................... GCGCATTGCATGCGCGCGTACATGTATATAACATGTACGAGTA 3796663 36 100.0 35 TGTACGAGTA .................................... GAGCTCGCAAGAGCTCAGCAAGAAGAAGAAGAACT 3796734 36 100.0 38 AAGAAGAACT .................................... TTTCGTTTGAAAATGTTTATGGAAAACCCCCTTGGGTT 3796808 36 100.0 41 CCCTTGGGTT .................................... TTTTTTTGGGGTTATTCTACCGGAAAACGTCATACTTGAAG 3796885 36 100.0 38 ATACTTGAAG .................................... GAATTAGGTAAATTACCTTATGAAATATAGCTATTTTA 3796959 36 100.0 36 AGCTATTTTA .................................... TTGCCTCTGAAGAAGAGGTAAAAGGCTGGCTGAAAA 3797031 36 100.0 35 TGGCTGAAAA .................................... AATTCTGGGCTTGGCTCTAGGAATACAACGTAGAT 3797102 36 100.0 36 CAACGTAGAT .................................... GTTGTAAATATACAAGAATATGCTTTCAGTTTTCCG 3797174 36 100.0 38 CAGTTTTCCG .................................... TCGGATTCCAGAAGGTCGTGAAATCATCAACCAAGATC 3797248 36 100.0 37 AACCAAGATC .................................... TTGGTCTGTTTGTGTTGCTATTTTTGAGGGTTTTTAG 3797321 36 100.0 40 GGGTTTTTAG .................................... TTGTAAATATCAAGGATTTCAGTTTTAGTTTTCCGATTAA 3797397 36 100.0 TTCCGATTAA .................................... AGTTCGTCTG ========== ====== ====== ====== ========== ==================================== 15 36 37 GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.40,-5.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [61.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [557,450] Score: 0/0.18 # # Final direction: R [0.27,0.78 Confidence: MEDIUM] >NC_011729 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 4019765 36 100.0 35 CAGACGAACT .................................... GTGGCGGGGGCCCAGGATAACGTTCCCCCCTTATA 4019836 36 100.0 39 CCCCCTTATA .................................... TTGCTGCAATCCCAAAGGAAAACCAAAGGGGGTTTTCCT 4019911 36 100.0 36 GGGTTTTCCT .................................... CAAAATTTTGGGCGAAACCTTGGACGCTTTTAATTG 4019983 36 100.0 38 CTTTTAATTG .................................... AATCTTGACCAAGAGAGCGGAAAGCCCAATTCCAAACC 4020057 36 100.0 38 ATTCCAAACC .................................... GAGGCTGCCGATCCGGTTTTGCAATAAACTGAGTTCGC 4020131 36 100.0 34 CTGAGTTCGC .................................... GTGATTCCCAAGGCTGTCCAGATCCCTGGACCTA 4020201 36 100.0 35 CCTGGACCTA .................................... AAAAACATCTCCGTCTTTAAATACGGATGTTTTTT 4020272 36 100.0 41 GATGTTTTTT .................................... TCCCCTCCTAAGTGGGATAAAATTAAGCATGAAGCATGGTC 4020349 36 100.0 40 AAGCATGGTC .................................... CCCCTCTTTGATTCTGCAATGCAGAGAGGATAACGTTCAA 4020425 36 100.0 37 TAACGTTCAA .................................... GAGGAAGGCCCCACCCATCAAAATTAATCATCTACGC 4020498 36 100.0 36 TCATCTACGC .................................... TACTTAATGCACCTATTGAATCTAGCTGTTCAGCAA 4020570 36 100.0 34 TGTTCAGCAA .................................... CTGAAGCGTACAAGAAAGTTTTGCCTTTCAATTC 4020640 36 100.0 36 CTTTCAATTC .................................... CCCGGATCGGGAGTTTGTAGCTCTCCGATAAACCAA 4020712 36 100.0 GATAAACCAA .................................... TGGGCTAAGA ========== ====== ====== ====== ========== ==================================== 14 36 36 CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.80,-4.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [213,810] Score: 0.18/0.18 # # Final direction: R [0.37,0.45 Confidence: LOW] >NC_011740 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 326990 29 100.0 32 NNNNNNNNNN ............................. TGATCCGGGTGTCTAACGAACTGCTGAGCGAT 327051 29 100.0 32 NNNNNNNNNN ............................. AATCAATAAAACAATTTAGAAATATAATGGGG 327112 29 100.0 32 NNNNNNNNNN ............................. GCAATGCGTCGTGCGGATTCTCACGTCATTCC 327173 29 100.0 32 NNNNNNNNNN ............................. CCTGTTGAAACAGATATTCCCTACGCGCTGGT 327234 29 100.0 32 NNNNNNNNNN ............................. AGGCCGCAGTTGTACTCTTGGTGCTGCTTCCT 327295 29 100.0 32 NNNNNNNNNN ............................. CGCCTGAAATCATCGTTCTGTAGTTGTCTAGC 327356 29 100.0 32 NNNNNNNNNN ............................. CCTATCAGAATTGGCGGTGAACTTTTATTTGT 327417 29 100.0 32 NNNNNNNNNN ............................. CGCAGCAGATGCAGGCAGCACAGCAGCAGCAA 327478 29 100.0 32 NNNNNNNNNN ............................. TCTCTCATCTGGTCAGGCATTGGCCCTTGCAT 327539 29 100.0 32 NNNNNNNNNN ............................. GTCACTTCGTTTTTATCAACGGCCAGCACGGC 327600 29 100.0 32 NNNNNNNNNN ............................. CATGCATTGCTCAGCCAGTTTTATGGCAGCCC 327661 29 100.0 33 NNNNNNNNNN ............................. CGGTTATCACAGAGCTGAAACAGAACTGGAAAA 327723 29 100.0 32 NNNNNNNNNN ............................. GCAAACAGAACGGGCACGTAAAATGGAATGAC 327784 29 100.0 32 NNNNNNNNNN ............................. GTTTACATGCAGGCGCTGGTCACGTGGGCTGC 327845 29 100.0 32 NNNNNNNNNN ............................. TAATAGCCGCCCTCTTTCTGATTCTCTTCAAC 327906 29 100.0 32 NNNNNNNNNN ............................. GCTGTAAACCTTGCTGTAAAAGGCCATCGTTT 327967 29 100.0 32 NNNNNNNNNN ............................. GATGGCTGTCATAAAAATTTCTCCGCTATTTG 328028 29 100.0 32 NNNNNNNNNN ............................. CATTACGTAAAAGCGTAGAAGGCGAAAATCAC 328089 29 100.0 32 NNNNNNNNNN .................A........T.. GCAACGACGGTGAGATTTCACGCCTGACGCTG 328150 29 100.0 1 NNNNNNNNNN .T.........AT................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 20 29 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,3] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-13.40,-12.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [107,83] Score: 0/0.18 # # Final direction: F [1.92,0 Confidence: HIGH] >NC_011729 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 4020783 36 100.0 34 GGTCAAAAAA .................................... GCTTGTTCAACGTTTTCTTGCGCCCCTTTTAGGG 4020853 36 100.0 33 CCTTTTAGGG .................................... ATAACGTCAGCCTCTTGAGCGCCATTTCGCAAA 4020922 36 100.0 41 ATTTCGCAAA .................................... AAACCCTGCACATATCAGCCAGCACGTCAGACCCCGGTGTC 4020999 36 100.0 37 CCCCGGTGTC .................................... CTTATCTCTATGGCTATTGCTATCAATTCTTCGTAGA 4021072 36 100.0 38 TCTTCGTAGA .................................... TCCTTTTGGGAGAAACTTTGAGTAATCCACATGCAATA 4021146 36 100.0 ACATGCAATA .................................... GAAATTTAATTGTCTTTTGAGGAGACTTACTTTGGTTT ========== ====== ====== ====== ========== ==================================== 6 36 36 CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.80,-4.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [58.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1231,376] Score: 0.18/0.18 # # Final direction: F [0.55,0.27 Confidence: MEDIUM] >NC_011741 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2953475 29 100.0 32 NNNNNNNNNN T..........................T. TTTTGTGCCCTGGCGTTTTGCTGGCTCTCGCG 2953536 29 100.0 32 NNNNNNNNNN ............................. TTTGCCGCTGTCAGCATTGCTGGCGCGTAATA 2953597 29 100.0 32 NNNNNNNNNN ............................. CGTTCCTCGCATTATTTCCCTTTCTTCTTCGA 2953658 29 100.0 32 NNNNNNNNNN ............................. GTCGGCAGAGAATCGTTCGATTGCCCCTACAT 2953719 29 100.0 32 NNNNNNNNNN ............................. ATCAACGTTATCGATTACAACTGACAGGGAGC 2953780 29 100.0 32 NNNNNNNNNN ............................. CCCGAAAGAGATTGCCAGCCAGCTTAATTTGC 2953841 29 100.0 32 NNNNNNNNNN ............................. AAAATTCATATTGATAAACACCGCGTTTGTAT 2953902 29 100.0 32 NNNNNNNNNN ............................. GAGGCAATTAGTAAAACTCCGGCAATTGCTGC 2953963 29 100.0 32 NNNNNNNNNN ............................. CCGGCGTTGAGCGCCAGATGACTGAGAAAGAG 2954024 29 100.0 32 NNNNNNNNNN ............................. CTCACCGCTTTTGACGCCAGGGAAATCGGCGG 2954085 29 100.0 32 NNNNNNNNNN ............................. CCGTTCATATTCGTTTCCTCGTGGCGCGATCT 2954146 29 100.0 32 NNNNNNNNNN A............................ GGACCAAATACCCGTCCCTCAATCCACGCCGT 2954207 29 100.0 32 NNNNNNNNNN ............................. AATTGAGACGTTCCACGCAATTAAACAAGCCG 2954268 29 100.0 32 NNNNNNNNNN ............................. TGACAAATAGAAATCATATGATACTATAGCCA 2954329 29 100.0 32 NNNNNNNNNN ............................. ATCATCTCCGCTGAATAGCGTAAATTATCAGG 2954390 29 100.0 32 NNNNNNNNNN ............................. ATTAAATCGTCAGAAAATAGCGGTAATCAAGT 2954451 29 100.0 32 NNNNNNNNNN ............................. GGCGGCGGTTTATTGTCAATGTGCAGCCCCAG 2954512 29 100.0 32 NNNNNNNNNN ............................. TACGGGACAGCCCCAGCGATTTACCGTAATGC 2954573 29 100.0 32 NNNNNNNNNN ............................. TCGATAATATGCGCCACCCGGAGCGTAAAAAA 2954634 29 100.0 32 NNNNNNNNNN A............................ TCAAGGTGCCGCAGGCGCAGCAGGCTGGTTGA 2954695 29 100.0 32 NNNNNNNNNN ............................. AGTTAACAACCCGCGCCGAACAAGCCCAATAA 2954756 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 22 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [640,341] Score: 0/0.18 # # Final direction: R [0,1.65 Confidence: HIGH] >NC_011741 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2926711 29 100.0 32 CCAGTGCGCC ............................. AGTGCTGGACCATTTCAAATTCACAATAGATT 2926772 29 100.0 32 ACAATAGATT ............................. GGAATGATATTTCAATAAATAATTATAACAAT 2926833 29 100.0 32 TTATAACAAT ............................. TTTTTGTTAATTGCGTTTGCCACGGTTTGCAA 2926894 29 100.0 31 CGGTTTGCAA ............................. TGAGCGTCGGCGGCTCGCTGGATTTGCGCGG 2926954 29 100.0 32 ATTTGCGCGG ............................. AATGCATCAGTTGAACACAAAAGTAGCTTTTC 2927015 29 100.0 32 GTAGCTTTTC ............................. TTTTGCTGACACCGGCAATACTGAACGGCTGG 2927076 29 100.0 32 GAACGGCTGG ............................. ACGGATTGCGGTATATGCAGTGTCCAGATTCT 2927137 29 100.0 32 TCCAGATTCT ............................. TAAACCACCAGCCAGACCACCAATTACCACAC 2927198 29 100.0 32 ATTACCACAC ............................. GGGGATAACGGTTATCCACTGGCCGCCGATCT 2927259 29 100.0 32 CCGCCGATCT ............................. TGTAATAGCCTGATCTCTGATCTCCCTCGCCT 2927320 29 100.0 32 TCCCTCGCCT ............................. CTGTCCCAGGCCGAGGCTGTATTTCAATCCTG 2927381 29 100.0 32 TTCAATCCTG ............................. GCGATGGATCAGGGTATTACACTCGACGGCGG 2927442 29 100.0 32 TCGACGGCGG ............................. GCTGCGGGTCAATCAACTGGAGTGCAAATCCC 2927503 29 100.0 32 TGCAAATCCC ............................. GTCGCGCGCCGACGGAATAAACCGAATAAATT 2927564 29 100.0 32 CGAATAAATT ............................. TCGTCAGGGCACAATAACTGAGGTTCGCACAA 2927625 29 100.0 32 GTTCGCACAA ............................. CGCCCCCACTTCAACTGAGCGCGTAAGCGTGC 2927686 29 100.0 32 GTAAGCGTGC ............................. GCGACCGGCTCGTCCGTTGCCGCGGCTGGCAC 2927747 29 100.0 CGGCTGGCAC ............................. ACTAAGCATA ========== ====== ====== ====== ========== ============================= 18 29 31 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [83,98] Score: 0/0.18 # # Final direction: R [0,1.51 Confidence: HIGH] >NC_011729 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 5095712 37 94.6 33 GCTCAGTTGC --................................... TGACCCTTTATAAAAATAAAAAGGACTACTGAC 5095782 37 100.0 36 GACTACTGAC ..................................... CAAGTATTTTTATTTGGTTTCTTTTTCATTTCTGCT 5095855 37 100.0 36 CATTTCTGCT ..................................... AAATCCTTATGACAAATGGCTGGTTTTTATCCCCAA 5095928 37 100.0 34 TTATCCCCAA ..................................... TCCCGATGACCATCCGGCCATTTCAGGAAAGCCT 5095999 37 100.0 35 AGGAAAGCCT ..................................... CTAAAATAGACCTGTCCTTGGTAACAGTAACCCAT 5096071 37 100.0 37 AGTAACCCAT ..................................... GGACGATCGCCACCCGATCAACCTTTGGGGTTTGCAA 5096145 37 100.0 35 GGGTTTGCAA ..................................... AAAAACAAGCAGAGGAATATTTAAAAGAAATTAAG 5096217 37 100.0 AGAAATTAAG ..................................... TGAAGAAAAAA ========== ====== ====== ====== ========== ===================================== 8 37 35 GTTTCAATCCCGTTGCCAGGATTCATTAATTAAAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.40,-8.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [164,655] Score: 0.18/0.18 # # Final direction: R [0,5.46 Confidence: HIGH] >NC_011745 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 882516 28 100.0 32 NNNNNNNNNN ............................ ATGCAGCGTTTGTCACTAAAACACTGGTCAAC 882576 28 100.0 32 NNNNNNNNNN ............................ TGGTATACCTGGAAGTTCGTCCTGTTAAACAG 882636 28 100.0 32 NNNNNNNNNN ............................ GCCTCAAAATCCCTTGCGTGTTTTTGCTCCCC 882696 28 100.0 32 NNNNNNNNNN ............................ ATAAAGATAATAACACAATCGTGTCTGGATTT 882756 28 100.0 32 NNNNNNNNNN ............................ AGGAACCGCGTCAGCCCCCTGCAAAGCTCATT 882816 28 100.0 33 NNNNNNNNNN ............................ TGGCGCGCCTGGAGGACATCCCGGAAGACCAGC 882877 28 100.0 32 NNNNNNNNNN ............................ GGTAACGGGTCAGGCCGACCGTGGAATACCGC 882937 28 100.0 32 NNNNNNNNNN ............................ ATAAAGCGATCGACGCGGTTCCAGCCATAGAA 882997 28 100.0 33 NNNNNNNNNN ............................ TGATGCATCACAAACGGGAAGGGTAACGGGCGA 883058 28 100.0 32 NNNNNNNNNN ............................ AGACATCTGCTCAATAGAACGGGTGATCTCAA 883118 28 100.0 32 NNNNNNNNNN ............................ AGATCCAGTTCATCATCCAGCGCAGACTCTTG 883178 28 100.0 32 NNNNNNNNNN ............................ CGTCACCCGCGCAGCAGTCACACGGGCGCACG 883238 28 100.0 32 NNNNNNNNNN ............................ ACCGCCGGGGCGGTTTCCCCGATGAAAAGGAA 883298 28 100.0 32 NNNNNNNNNN ............................ GTGGCGCTAGCAATGAGATTTGCGGAAAAAAG 883358 28 100.0 32 NNNNNNNNNN ............................ GTGCTGCCCGCCAGCGTGGCGTAATTGTCACA 883418 28 100.0 32 NNNNNNNNNN ............................ AAAAAGTTGCGCCGCGTGACCGGCACTATAGA 883478 28 100.0 20 NNNNNNNNNN ............................ CTGAACGTTGAAGAGTGCGA 883526 28 100.0 1 NNNNNNNNNN CC..................TA.TC.C. NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 18 28 31 GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [214,168] Score: 0/0.18 # # Final direction: F [1.65,0 Confidence: HIGH] >NC_011742 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 926568 28 100.0 32 TAGTATTTGA ............................ TGACGCCATATGCAGATCATTGAGGCGAAACC 926628 28 100.0 32 AGGCGAAACC ............................ ACGTTCGCACCGGTCAGGGTACTGCGCAGCGT 926688 28 100.0 32 TGCGCAGCGT ............................ GAAACCAGAGCGCCCGCATAAAACAGGCACAA 926748 28 100.0 32 ACAGGCACAA ............................ TGATGGCGCAGCAGTCCTCCCTCCTGCCGCCA 926808 28 100.0 CCTGCCGCCA ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT ========== ====== ====== ====== ========== ============================ 5 28 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [214,228] Score: 0/0.18 # # Final direction: F [1.51,0 Confidence: HIGH] >NC_011742 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 935956 28 100.0 33 NNNNNNNNNN ............................ TGGATTCCAAACCGCCCACCAACAAAAACAGGT 936017 28 100.0 32 NNNNNNNNNN ............................ GATACGATCGAATTTAGTCACTGAATACCCCC 936077 28 100.0 32 NNNNNNNNNN ............................ GGGTTGCGCAATGGGCTGGCCGACGAACGCGG 936137 28 100.0 32 NNNNNNNNNN ............................ TGTGGCGCTGATGCGTCTGGGCGTCTTTGTAC 936197 28 100.0 32 NNNNNNNNNN ............................ GCGCGCAGTGCCTGATAATCAATTTTGCTCAT 936257 28 100.0 32 NNNNNNNNNN ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 936317 28 100.0 1 NNNNNNNNNN ....................TC.TC... NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 7 28 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [542,114] Score: 0.18/0.18 # # Final direction: F [2.1,0 Confidence: HIGH] >NC_011745 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 892615 28 100.0 32 TATTATTCCA ............................ TGCAAACGCTACTTGCTCATTGACCACGTAAG 892675 28 100.0 33 ACCACGTAAG ............................ GGTTAGGGGTATCGGCGCGCTTGACCTCCTGAG 892736 28 100.0 32 ACCTCCTGAG ............................ TTTTGGGGATACCTGTGTAAACCTTGAATTCT 892796 28 100.0 32 CTTGAATTCT ............................ TTGTTGCGTGTTGTCGCATCCAGGATGCGACA 892856 28 100.0 32 GGATGCGACA ............................ TGTCAGGGCAGGCCCCGACACCCAGAACGTGC 892916 28 100.0 32 CAGAACGTGC ............................ TTCAGCAGCTCTCGAACACGTTCCCAACCTTT 892976 28 100.0 32 CCCAACCTTT ............................ ATGCGGTTGGTAGGTGGTCGTAGACCGTCAGT 893036 28 100.0 32 GACCGTCAGT ............................ GTTCCGTATACCAGTGATATGCAGAAGGAACA 893096 28 100.0 33 AGAAGGAACA ............................ AGGAGCATTGGCGGAGGGAACGCGAGCGCGGGT 893157 28 100.0 32 GAGCGCGGGT ............................ GAATCTCGGCGCGACGGCACCCGCCACCGGGG 893217 28 96.4 32 GCCACCGGGG .G.......................... AGTTCGCGGCAGACATACACGCCGGGAGTTTT 893277 28 100.0 32 CGGGAGTTTT ............................ CAGCGGGGTGATTGAATATTTTGGCATCAGAC 893337 28 100.0 GGCATCAGAC ............................ TTTCTGCTGTTATCGCCGGGTTGCACGAGTGC ========== ====== ====== ====== ========== ============================ 13 28 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [68.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [543,174] Score: 0.18/0.18 # # Final direction: F [2.1,0 Confidence: HIGH] >NC_011748 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3120001 29 100.0 32 NNNNNNNNNN T.................A.......... GCCTGACATTGCAGACGTTACAAATTGAGAGG 3120062 29 100.0 32 NNNNNNNNNN ............................. TAATCACGTTTTAGCGCGCCCTCGTCCGGTTT 3120123 29 100.0 32 NNNNNNNNNN ............................. ATCTTCTTGTTCAGGAACGTCAGTAGAGGTGT 3120184 29 100.0 32 NNNNNNNNNN ............................. TAATCACGTTTTAGCGCGCCCTCGTCCGGTTT 3120245 29 100.0 32 NNNNNNNNNN ............................. ATCTTCTTGTTCAGGAACGTCAGTAGAGGTGT 3120306 29 100.0 32 NNNNNNNNNN ............................. AGCATTAACCCCCACCAGCTCGACGTGTGTGG 3120367 29 100.0 32 NNNNNNNNNN ............................. GCGGGCGTTAACGCGGTGATACTGTTTGACGG 3120428 29 100.0 32 NNNNNNNNNN ............................. ACCGAGCGCCGCTGGGAGGCGTATCTCACGTT 3120489 29 100.0 32 NNNNNNNNNN ............................. TGAATGATCGGAAAGACGCTGCAAAGGCAATG 3120550 29 100.0 32 NNNNNNNNNN ............................. ATTAAAGGATTATTTTGATGAGTCTGAAAAAT 3120611 29 100.0 32 NNNNNNNNNN ............................. TGATTTTGGTGGCGGGGGTGACTGGGGGAATA 3120672 29 100.0 32 NNNNNNNNNN ............................. TACCGGTGTGAATTACAGCACCACCGCCACCC 3120733 29 100.0 32 NNNNNNNNNN ............................. CAAACAGGTCGACATGTTTGGCTAACAGCTAA 3120794 29 100.0 32 NNNNNNNNNN ............................. CGATAACACAGGGCCGTCAATGCGGCCCTTTT 3120855 29 100.0 32 NNNNNNNNNN ............................. ATACCGGGTTTTGCTCCAGCAGCGCCAGTTCC 3120916 29 100.0 1 NNNNNNNNNN T............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 16 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,6] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [640,341] Score: 0/0.18 # # Final direction: R [0,1.65 Confidence: HIGH] >NC_011751 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3181533 29 96.6 32 CCAGTGCGTC ................A............ ACATGAATGTCGGTTCAGACCGTGTTTTTACC 3181594 29 100.0 32 TGTTTTTACC ............................. TGCCTCGGCGGCGGCTCTGCGCAACCGCGAAA 3181655 29 100.0 32 AACCGCGAAA ............................. GTTAAACCGTGATGATCAGCAAAAGCTATTTC 3181716 29 93.1 32 AAGCTATTTC .........T......A............ GTCAATAGGCGGCGTCCCGTAGCCGTCCCCTT 3181777 29 100.0 32 CCGTCCCCTT ............................. TTGAAATGGTCCAGCACTGCGACCGTCGGCCC 3181838 29 100.0 32 CCGTCGGCCC ............................. GCTGGTGGCGCGGGCAAACGGAACAATCCCGC 3181899 29 100.0 32 ACAATCCCGC ............................. GCTAACCTATAACACGGAAAATCACACGCTAA 3181960 29 100.0 32 CACACGCTAA ............................. GGCCATTCCCCCAAGCAGACGCAGGAAGTTAA 3182021 29 100.0 32 AGGAAGTTAA ............................. CTGGATTTCACCTCAGCAAATGCTGGATGTGG 3182082 29 100.0 32 CTGGATGTGG ............................. CACCCCTGATATTTTTGCCACCGTGGTTACTC 3182143 29 100.0 32 GTGGTTACTC ............................. AGAAATCAAACTCAGCGTGCAAATGGGGTAGC 3182204 29 100.0 32 ATGGGGTAGC ............................. TTGCGTTATTTCTATCTGGTGAGTCGCGGCAC 3182265 29 100.0 32 GTCGCGGCAC ............................. GTATTTTTTATCGTCGCATGAGTCGCGGTAAC 3182326 29 100.0 32 TCGCGGTAAC ............................. TTCTGCCGCGCCAGCAAACGTATCGGCGGTCA 3182387 29 100.0 32 TCGGCGGTCA ............................. CCCAGGCCAAGCATTATATCCTGTGCGTCGTT 3182448 29 100.0 32 GTGCGTCGTT ............................. ACCAAGAAGCTGACGAATCAGCCCGACACGCA 3182509 29 100.0 32 CCGACACGCA ............................. CCAGTTTCATATGAGCCGCCGCGCTGGATCAT 3182570 29 100.0 GCTGGATCAT ............................. ACTAAGCATA ========== ====== ====== ====== ========== ============================= 18 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [40.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [83,98] Score: 0/0.18 # # Final direction: R [0,1.92 Confidence: HIGH] >NC_011751 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3208302 29 96.6 32 GTTATATGGT -............................ ACAAATGATGCGCCAAAACCAAGACTTTTACA 3208363 29 100.0 32 GACTTTTACA ............................. TTTCCCCCATGCGGGAAGCGCGTGCGATTTCG 3208424 29 100.0 32 TGCGATTTCG ............................. TGATCAATCTGGTTTATATAGGCTTGCGCGGA 3208485 29 100.0 32 CTTGCGCGGA ............................. CTGCAACTGATTTTACGCGAGCGCAGGCCGCG 3208546 29 100.0 32 GCAGGCCGCG ............................. AGTAATCTCCGATCTGTTTGTAAATCTGCTGC 3208607 29 100.0 32 AATCTGCTGC ............................. GAGGTCGCAGTCCTGCTCAATCTGCCCCGTGT 3208668 29 100.0 32 TGCCCCGTGT ............................. CAAATCACAAATTTTCGCAAAAGCCTGGGCAA 3208729 29 100.0 32 GCCTGGGCAA ............................. ATCGGGGTATTCAGTTTCGATGCGGGATTGTA 3208790 29 100.0 32 CGGGATTGTA ............................. TCCGGTACGCGCGGGATCGAATCCGGCCCAGA 3208851 29 100.0 CCGGCCCAGA ............................. ACTAAACATA ========== ====== ====== ====== ========== ============================= 10 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,6] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [68.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [641,340] Score: 0/0.18 # # Final direction: R [0,1.92 Confidence: HIGH] >NC_011729 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================================== ====== 84037 53 90.6 34 CTAAAACATA ...........C....G...........A................T..G.... CGGGTTCATCGTGCCAATGTTCGGCTAAAGCAGA 84124 53 100.0 34 CTAAAGCAGA ..................................................... CCGGTTCATCAGGCCAATGTTCGGCTAAAACATA 84211 53 100.0 34 CTAAAACATA ..................................................... CCGGTTCATCAGGCCAATGTTCGGCTAAAACATA 84298 53 96.2 34 CTAAAACATA .........................................A...G....... GGGGGTCATCGCGCCAATGTTTGGCTAAAGCATC 84385 53 94.3 CTAAAGCATC ............................A..........G.....G....... CGGGTTCATCGCGCCAATGTTTGGCTAAAGCAGAGATCGCACG ========== ====== ====== ====== ========== ===================================================== 5 53 34 GATCGCACTCCATTCACCCTTTTGAGCTTGTTGTTGGATAATGGGAAAAGTTT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.49%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-7.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [5-5] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [60.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [786,2765] Score: 0.18/0.18 # # Final direction: R [0.27,0.55 Confidence: MEDIUM] >NC_011729 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 873560 36 100.0 35 TCGGAAATCC .................................... GCAAACAAACAAAAGAAAAAGCCCGTGACAATCAT 873631 36 100.0 37 TGACAATCAT .................................... GAAGGAGGTGGCGGTGGCGGTGACGGTGATTTCCTGA 873704 36 100.0 36 GATTTCCTGA .................................... GCAACCATAGGAATAATCATGACTGGAGGCTTAGAG 873776 36 100.0 39 AGGCTTAGAG .................................... CACTATGAAATGTATAGCAGGTTGGGCGGAGTATCTGTC 873851 36 100.0 39 AGTATCTGTC .................................... AAGCGCTAATTTATTTAGCAAGCAAATTAACCAGATTCT 873926 36 100.0 36 ACCAGATTCT .................................... TCTCGATCAACAAAAAATATCTTCCCAAGCTTGAAG 873998 36 100.0 36 AAGCTTGAAG .................................... ATTACACTCAAGCAGAGCAGTCTTTAATAACTTCAG 874070 36 100.0 35 ATAACTTCAG .................................... CCACAACCTCAACCCCTTAATTCTGAAGATCCTTT 874141 36 100.0 36 AAGATCCTTT .................................... ATTTAGAGAGAGTAGCGAAAAAGTTTGGATATGTCA 874213 36 100.0 GGATATGTCA .................................... GGCTAGCCAC ========== ====== ====== ====== ========== ==================================== 10 36 36 GTTTCCAACAATTCCTATTCTACCCAATAGGTAGGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.40,-5.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [254,1019] Score: 0.18/0.18 # # Final direction: R [0,0.55 Confidence: HIGH] >NC_011729 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 884144 36 100.0 37 GAAAAGTTTA .................................... GTTGGTTTGAAGGAGGACTAAAAGATTGGGCAAATGC 884217 36 100.0 35 GGGCAAATGC .................................... CGGCTGAAAAATCCGGTTTTACTGATCTCGATCGC 884288 36 100.0 40 TCTCGATCGC .................................... ATATCCAGGGGATTACCGCACTTTATGATCTTCATCAGAT 884364 36 100.0 35 TTCATCAGAT .................................... TTTCAAGAATTTTTAAGAGGGCAATTCGCTGAAAA 884435 36 100.0 37 TCGCTGAAAA .................................... ACTTTGGTGTATTCCGATTAGATGGCGTTCCTCTTGA 884508 36 100.0 37 TTCCTCTTGA .................................... CCGGTGCATATGCCATCGGGCCATTTACCTCCAAAGA 884581 36 100.0 39 CCTCCAAAGA .................................... GTCAAACTAGGTAAACCTTATGAAATATAGCTACTTTAC 884656 36 100.0 35 GCTACTTTAC .................................... AATCCGTCAGGGAGTTGACAGCGATTGTTTCTCCG 884727 36 100.0 40 TGTTTCTCCG .................................... CTGTCAAACTGTTCGAGGCCGAAAAGCCCAGCAGTAATGA 884803 36 100.0 41 GCAGTAATGA .................................... ATGATGGGAACGGAAGCATATGATGCTACCGTTAAGGGTAA 884880 36 100.0 36 TTAAGGGTAA .................................... CTTGTTTGTATTTTATTTACTTTAAGTTTGTCTTCA 884952 36 100.0 36 TTTGTCTTCA .................................... AAGAAGCAAAAAATTCAAAAGCGCAAAGAATATTTC 885024 36 100.0 37 AGAATATTTC .................................... ACTTTTCCGGGCAAAAGGTCGAGCATTTCGGTCGAAC 885097 36 100.0 36 TCGGTCGAAC .................................... TAAAGCCAATTGGTCTAGCAATACTTCCAGTAACTT 885169 36 100.0 34 CCAGTAACTT .................................... AAGAGCCTGCCAAACCTAGGGTGTAAAACCGCCT 885239 36 100.0 AAAACCGCCT .................................... AGTTCGTCTG ========== ====== ====== ====== ========== ==================================== 16 36 37 GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.40,-5.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [179,451] Score: 0.18/0.18 # # Final direction: R [0.27,0.55 Confidence: MEDIUM] >NC_011737 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 168133 36 100.0 35 CTCACGTTTA .................................... CCCATAAAAAAGACAATAAAAAAATAGAGAAATTT 168204 36 100.0 37 AGAGAAATTT .................................... AAGCTAAAAAGCTTCTGATAAAGGGCTTTAGTTTCCT 168277 36 100.0 34 TTAGTTTCCT .................................... TCGGTGGCATCAGCATAAAATCATGTCTGATTAT 168347 36 100.0 35 GTCTGATTAT .................................... AATTGCTCCGAGCAATTCAAATCTAAAGTAAGGGT 168418 36 100.0 34 AAGTAAGGGT .................................... CTTACCAGCAAGTAAATCTCATCGTCATTATTTA 168488 36 100.0 35 TCATTATTTA .................................... ATAGCATTGGAGTAAGAGGAACTTTTTCCATTAAG 168559 36 100.0 37 TTCCATTAAG .................................... TTTCAAGTGCCCAAACTTCACGGTATTTGTCAGTATT 168632 36 100.0 34 TGTCAGTATT .................................... CTATTGCTTCCCCCCATTTGTCTGCGAATATTTC 168702 36 100.0 35 CGAATATTTC .................................... AGAAATCCAAGTTTCAGAGAAATATAAGTAGTCAT 168773 36 100.0 34 AAGTAGTCAT .................................... CTTTCAATTTCCTTGGGGTTAATCGTAGGATTGT 168843 36 100.0 37 GTAGGATTGT .................................... TTAAGTTAATTTTTGAGAATAATTTAAAGATTGGTAT 168916 36 100.0 36 AGATTGGTAT .................................... CGTGGGCTTCTAGTAAAATTTCGCCAGATTGTATCT 168988 36 100.0 35 GATTGTATCT .................................... GATTGTATATTGTTTGTGTTGTACCGTTTTTATTA 169059 36 100.0 36 GTTTTTATTA .................................... AACACAAGATTTCAGGGGAACGACCCACAACAATAA 169131 36 100.0 35 ACAACAATAA .................................... TCTTCAGAGAGTGCATCAAGCACCTCCACAGCATT 169202 36 100.0 CCACAGCATT .................................... AGCGAACGCT ========== ====== ====== ====== ========== ==================================== 16 36 35 GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.00,-7.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [66.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [321,733] Score: 0.18/0.18 # # Final direction: R [0.27,0.55 Confidence: MEDIUM] >NC_011738 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 262869 36 100.0 42 NNNNNNNNNN .................................... GACTCTTTTTGGAGAAAGCGCGATCGGCAAATCTCTCCCGAA 262947 36 100.0 37 NNNNNNNNNN .................................... GATCCTCCCCTCGCTTCGGGTTAGCAATACTTGAAGC 263020 36 100.0 36 NNNNNNNNNN .................................... GAGTCGAACTTAAAAATCATTCCATCGAGAGTAATC 263092 36 100.0 35 NNNNNNNNNN .................................... ATTTTTTTGGTCTTCTTTGTATTTGATGTCCTCAA 263163 36 100.0 40 NNNNNNNNNN .................................... CAGAACCAATTTCTTATCTAGATTTTCAATGGCAGTTTTG 263239 36 100.0 1 NNNNNNNNNN ............A........A..C.TC.CCCTTGA NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 6 36 38 CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.80,-4.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [215,64] Score: 0.18/0.18 # # Final direction: F [0.96,0.27 Confidence: MEDIUM] >NC_011770 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1571726 28 100.0 33 TTCGGGGCTA ............................ TCGTTCACGCAAGAGGGCACGGACGGCCTCGAT 1571787 28 100.0 32 CGGCCTCGAT ............................ TAACGTAACGTCTGCACATTATGCGAAGCCAG 1571847 28 100.0 32 GCGAAGCCAG ............................ AAAATCTGATGCCGACCATCGTGATTTCGAAC 1571907 28 100.0 32 GATTTCGAAC ............................ GCCCGCTGGGGAAGCCGCAGTTATCCGGAGTA 1571967 28 100.0 32 ATCCGGAGTA ............................ ATGCTCATTTCGCCACCTCGATTCCGGCTTGT 1572027 28 100.0 32 TCCGGCTTGT ............................ AGGTTGACCAGCATGGCCGGCATCGACAGCGT 1572087 28 100.0 33 TCGACAGCGT ............................ ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 1572148 28 100.0 32 GCTGCTGGAC ............................ TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 1572208 28 96.4 32 CGAGGCTCAT .............T.............. ATACTGACTCAGCCAGGGAAAAGTCACTTGGA 1572268 28 96.4 32 GTCACTTGGA .............T.............. AGCGTGCCATGGCGGCGGTAAGTCAAACCGTT 1572328 28 96.4 32 TCAAACCGTT .............T.............. TGGTCGAACAGATGGCGGTCCTCGGCCAACTG 1572388 28 96.4 32 CGGCCAACTG .............T.............. ACGTCGGAACGCAACTACCTGACCGCGTTGGT 1572448 28 96.4 32 CCGCGTTGGT .............T.............. ATCGACCACGACAGTGCTTCCCTGGTCTATTC 1572508 28 96.4 32 TGGTCTATTC .............T.............. ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 1572568 28 96.4 GTCGATGCTT .............T.............. CTCAAGAAAG ========== ====== ====== ====== ========== ============================ 15 28 32 GTTCACTGCCGTACAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [9,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 92% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [58.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [965,797] Score: 0/0.18 # # Final direction: F [1.51,0 Confidence: HIGH] >NC_011750 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 2331525 20 100.0 40 NNNNNNNNNN .................... ATGGTGGGCGGGTGGAGTATGTTACCAGTGAATTTCTAAG 2331585 20 100.0 40 NNNNNNNNNN .................... GCCAACTTTCACAGCCTTTGCAAGATTGTTCCTTTCTAAG 2331645 20 100.0 1 NNNNNNNNNN .................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================== 3 20 40 CTGCCTGTACGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [4,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [574,216] Score: 0.18/0.18 # # Final direction: F [0.18,0 Confidence: MEDIUM] >NC_011761 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 934674 31 100.0 22 NNNNNNNNNN ............A.ACC........C...A. CGGGGGCTGGCGGCCCCCAAAA 934727 31 100.0 29 NNNNNNNNNN ..............ACC........C...C. TAGCTCATCCCCTTCCGGGCCCTCTGCGT 934787 31 100.0 29 NNNNNNNNNN ............................T.. GCAGTCAGGGCATCTGCAACTTGCGCGAT 934847 31 100.0 29 NNNNNNNNNN ............................... TGATCATCTTGGTAGACCGCGACATATCA 934907 31 100.0 1 NNNNNNNNNN ............................... NNNNNNNNNN ========== ====== ====== ====== ========== =============================== 5 31 27 CTTCTCAGCCGCGCGTGTGGCGGCATACCGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-10.00,-8.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [48.3-50.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [431,152] Score: 0.18/0.18 # # Final direction: R [0.55,0.78 Confidence: LOW] >NC_011766 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 752212 24 100.0 43 NNNNNNNNNN ........................ GTCTCAGTAAATACTTCAATTGCTTCTTTTTCGTTATTGTCGC 752279 24 100.0 40 NNNNNNNNNN ........................ TTTCATAAAACTCTCTCACTAGTCGACGCACCAATGCGGA 752343 24 100.0 42 NNNNNNNNNN ........................ ATGATATAGTTGAATCCCAAACATGTTTTAACCGATATAGCG 752409 24 100.0 41 NNNNNNNNNN ........................ TAGAGTGAGTTCATAAGTAGTTTGGCAAATTGTCTGGTTAG 752474 24 100.0 54 NNNNNNNNNN ........................ TCAAATTTTGTCTCTATAAAAAGAATGAGGCGTCTATGGAATAAAGAATGGGGA 752552 24 100.0 44 NNNNNNNNNN ........................ TCAACCTTCTAAGGACGTCTATAACGTCCTTAGAGAGAGATACG 752620 24 100.0 37 NNNNNNNNNN ........................ TTTCCGATTTTCCTCACGAATATGAATTCGTCTTCAC 752681 24 100.0 43 NNNNNNNNNN ........................ GCTGTTTCATCGTCTACGCTTATGGCTTTTATTATTCTCTTTC 752748 24 100.0 36 NNNNNNNNNN ........................ TCTTGTATGCCTCTACAAGTAATCTCTCAGCTACAC 752808 24 100.0 42 NNNNNNNNNN ........................ GCCCGTGTGAGAGGCCCCGTAGATATATAGCCAGTGTAGCCA 752874 24 100.0 44 NNNNNNNNNN ........................ CACGTGTAATTATAAATGATTTACGCCGTTAAAGTTTTTTCAGC 752942 24 100.0 38 NNNNNNNNNN ........................ AACAATAGCCGTCCAAGGGGTGTGCTGAATATACCCGA 753004 24 100.0 43 NNNNNNNNNN ........................ TAAATAAAATCTAAACCGTATGAGGTGAGGTGTAAGTCTTGGC 753071 24 100.0 43 NNNNNNNNNN ........................ TATCGTAATTATAGTTTAGATGCTTGATTACCTGGCGGATTAT 753138 24 100.0 40 NNNNNNNNNN ........................ TTGTTATAACCCCCATCTCATACATACGTCTCAAATCCAC 753202 24 100.0 44 NNNNNNNNNN ........................ ATTAATGCTGACACGTTGTAGCCTTGCTCTTTCAATTTCCTCAT 753270 24 100.0 46 NNNNNNNNNN ........................ TCAGGGCGTTCCTCTACGCGTTTCTGCTGCAGGTAGCAACTGAGCG 753340 24 100.0 42 NNNNNNNNNN ........................ CATAACCTAGACCTCTTGTACCAACGAACCTTACCTTTATTT 753406 24 100.0 42 NNNNNNNNNN ........................ AGACGTGAAAAAAACGTTTTAAACTAGCTATCACTTACCTTG 753472 24 100.0 41 NNNNNNNNNN ........................ TTAAACGCGTTACCACTCAATGCGTTCCCGTCAGAGTGGCG 753537 24 100.0 40 NNNNNNNNNN ........................ CGCCTCCACGTTCATATCAACATTGTTGAACAGAGACTTG 753601 24 100.0 43 NNNNNNNNNN ........................ AAATTTAATACACGCGTTTTATAGTAATCGCTCGCTTTTTTTT 753668 24 100.0 43 NNNNNNNNNN ........................ CAGAATATTACAATTCACTTCTAGGTGAACGGGCGTGAGTAGG 753735 24 100.0 40 NNNNNNNNNN ........................ CGATCACGACAACTGTCTATAACACTACTACTACCACCCT 753799 24 100.0 37 NNNNNNNNNN ........................ TTATATCCGTAGTGAATATTCAAATGCATTGGCTTTC 753860 24 100.0 41 NNNNNNNNNN ........................ TAGACCTGCCTCGAGACAGTTATAGTTGTATAGACCCTGCC 753925 24 100.0 44 NNNNNNNNNN ........................ CTTATCCCATGAACGCATTTTACCTTACGCCCCTACGGTAAAGT 753993 24 100.0 44 NNNNNNNNNN ........................ TTTGTCAGCTGTGTGATCACTTCTGTTTTGCTGTTGATTTTCGT 754061 24 100.0 42 NNNNNNNNNN ........................ CTTCTGACTCGAGCTCGACTAACACGCTCTCACCTCGCTCTC 754127 24 100.0 43 NNNNNNNNNN ........................ ATCTTAGATATGACGTAGTACCTGTCCTTCTCCATCGTGTAGA 754194 24 100.0 44 NNNNNNNNNN ........................ ACTGCTTTCAACCCTCCCGTTAGGGTCTTTCACAGCTCTATATC 754262 24 100.0 44 NNNNNNNNNN ........................ TAGTATAGCGCCTTTCCTCAGGGCTACCAACTACCGCGTCCTCA 754330 24 100.0 44 NNNNNNNNNN ........................ TATACTACTGGATGATTTGAGTTATGTACTCAATCCACGGAGTC 754398 24 100.0 43 NNNNNNNNNN ........................ CTTAGTTGCACTATCTCATCATGATACCTGTCTACGTCTATCC 754465 24 100.0 46 NNNNNNNNNN ........................ CTGTGCTACAAATCTCCCCAGGGCCTCGAGTTTCCTCAACTTGGGC 754535 24 100.0 39 NNNNNNNNNN ........................ GAGGTTCACACTACCACCCTAGAAGGAGGCTATGTGTTG 754598 24 100.0 42 NNNNNNNNNN ........................ ACTACCGCATATTAACGTCATTGACACAGCCCGAAATACGTC 754664 24 100.0 42 NNNNNNNNNN ........................ AGGCAGACAGCGTGAGGCAGGCTAGCATGGAGGAGCTGAAGA 754730 24 100.0 41 NNNNNNNNNN ........................ TACTCTTTCCCCGACACCTTCGACAACTCGCTAACACTCAC 754795 24 100.0 40 NNNNNNNNNN ........................ TGAATACGAGGATCAGGATACCGGTGAGATACGTAGTGGA 754859 24 100.0 47 NNNNNNNNNN ........................ AAGACTACATCGTCTGACCCACTCCACGCTTTCAACAGCCAAGTGAA 754930 24 100.0 43 NNNNNNNNNN ........................ CAAGACTATTGGCCTCGGCATGAACTTCTTCAATTCATCGTCC 754997 24 100.0 42 NNNNNNNNNN ........................ CTATTGTGGGCGGGGTGATGTCCGCTACTTTAACTTCTTGAC 755063 24 100.0 42 NNNNNNNNNN ........................ TTGAAGCGACCGTGGTGTCGGGCGTAGCTGCGAGCACAGTGT 755129 24 100.0 45 NNNNNNNNNN ........................ GAGATAATAAAATGTTGGCATTTAGACTATCGCCTCGCTGAAAGC 755198 24 100.0 45 NNNNNNNNNN ........................ TCGACCATCTCAAATGCTGTCACGGGTTTCCTGGACACGTTTAAA 755267 24 100.0 43 NNNNNNNNNN ........................ CCAGCTATACCTAGCTTACCAAAGATGATTCGTGCTAATGGAT 755334 24 100.0 40 NNNNNNNNNN ........................ ATGGTATATAATGATCGGACATCAATCGACCCGTCGAATA 755398 24 100.0 42 NNNNNNNNNN ........................ TGCTCTTTAATACGGCTGAGGGAGTTGATGCAAATAGCTCAG 755464 24 100.0 44 NNNNNNNNNN ........................ CCAATGACGCTTGCCAGCGATCTACTCCTTGGGAATATCTGCAC 755532 24 100.0 41 NNNNNNNNNN ........................ CTCTACCTTGACCAACAAACTCACCTAATATTCTAATAATT 755597 24 100.0 45 NNNNNNNNNN ........................ CAATGTACTTATCCACTCTCAAGCATTCAAGCGTCGCATCACTAA 755666 24 100.0 44 NNNNNNNNNN ........................ TACTGTGCCACCCCCGCCTCCCCCAGTAGGCTCCCTGAGGTATA 755734 24 100.0 42 NNNNNNNNNN ........................ CAGGAACGGGGCTATGCTTTTCGCGTAGTGACAGATAAACAT 755800 24 100.0 45 NNNNNNNNNN ........................ ATCACACGTTATTAAATCATACGCCTTAGCTATCCATGGTGTATT 755869 24 100.0 42 NNNNNNNNNN ........................ TCTGACATATAGTGTTTTTGAAACAGGGGTGGTCGGGATGCG 755935 24 100.0 41 NNNNNNNNNN ........................ AAATCACAGAAAGTGTTTGTCTCCGACTTGAGACAGGTATG 756000 24 100.0 44 NNNNNNNNNN ........................ TCCTTAGATACATGTACATACCCTTAGCAACTACTTCTAAGATG 756068 24 100.0 42 NNNNNNNNNN ........................ CGGTTACTGCCGTAGAAGTGATAAGAGCAAGAACATAGTTGT 756134 24 100.0 40 NNNNNNNNNN ........................ GCTTAGACTTATCATCGATGAACGACAGATAAAACGCACA 756198 24 100.0 41 NNNNNNNNNN ........................ ACGCGACCTGGAGCGGCTGTAGAATACCGTGCTGTCTGATG 756263 24 100.0 42 NNNNNNNNNN ........................ TTGCAGTGTGGCGTATGTAGCACTTGACCTCGCTGGCTTCTG 756329 24 100.0 42 NNNNNNNNNN ........................ CCGCTAGCTAGCCTCAATTTACAGAGGTGGCCCGCGGAGCCC 756395 24 100.0 44 NNNNNNNNNN ........................ GTTGCCTCCGCCCGCTCACGGCTCATGCCCAGCGATGCGAGGTA 756463 24 100.0 41 NNNNNNNNNN ........................ GAGTACTCAGCTGGAGTGTCAGCGCCACGTAAGGACTGGGC 756528 24 100.0 40 NNNNNNNNNN ........................ CAGGACTTTCACCTGCAGTGTGTACACACATTTCATTGAA 756592 24 100.0 44 NNNNNNNNNN ........................ ATCAAGATAGCCCATTTGAGAAAGTTTTTCCTTGAATGTCTCTA 756660 24 100.0 40 NNNNNNNNNN ........................ ACACCAGCACCTGGCGGGGAAGAGGAGAAGGCCGAGCAGA 756724 24 100.0 42 NNNNNNNNNN ........................ TTTTCTTAACTTCATCAGCAAATACATAGTCCTTGGGTGCAT 756790 24 100.0 43 NNNNNNNNNN ........................ AATAATGTCTCCCGGTGATGGAAAATATTCGGTGACGGCTAGC 756857 24 100.0 41 NNNNNNNNNN ........................ GAGCGGAGCCGACAAAGCAGTACCTAAGATGAGTGAATTCG 756922 24 100.0 47 NNNNNNNNNN ........................ GACAGAGAAACTAAAAGAGATGAAGCTCGAGAAGGTGATCGCGTGGA 756993 24 100.0 47 NNNNNNNNNN ........................ GTAATTCCATATATCCGCTGGGTTTGTTGGTGTTATAGCAGTACTTA 757064 24 100.0 41 NNNNNNNNNN ........................ TTTAAAATGGATACTAGCACGGGTATAATGGAGTTTATAAC 757129 24 100.0 40 NNNNNNNNNN ........................ CAGGACTTTCACCTGCAGTGTGTACACACATTTCATTGAA 757193 24 100.0 40 NNNNNNNNNN ........................ TAATGCTACTTTCACGTAGTACTTCTCGAACACTTCTTTC 757257 24 100.0 44 NNNNNNNNNN ........................ AATATGACACTGCAATCGATTCGCGTGATGCACGTGCGCGGTGA 757325 24 100.0 41 NNNNNNNNNN ........................ ATAACCCCGGTTAGTGTACCAGTTACACTATTCATCCACGT 757390 24 100.0 42 NNNNNNNNNN ........................ CTGGTCAGACCGCAATGCTCTACGAGGAAGACAGTCGACTCA 757456 24 100.0 47 NNNNNNNNNN ........................ GACAGAGAAACTAAAAGAGATGAAGCTCGAGAAGGTGATCACGTGGA 757527 24 100.0 42 NNNNNNNNNN ........................ ATAACATATGCGGAGGGGTTGTGACATGAACCTGCGCTACAA 757593 24 100.0 45 NNNNNNNNNN ........................ AGGGATGGGTTGAGGGATGCAATCACGTGGTATGGTGCATGGTAT 757662 24 100.0 42 NNNNNNNNNN ........................ CTCTTTATTGTAAAACTGTTTACGTAGCGTTTTTTACACCGC 757728 24 100.0 41 NNNNNNNNNN ........................ ACTCGCATTGCTCATTAACATAGCTATTGGTATAACTCTGT 757793 24 100.0 41 NNNNNNNNNN ........................ CGCAGGTCATCAACAACTATCCTTGATGGTTTCATGTTGCT 757858 24 100.0 41 NNNNNNNNNN ........................ GTAGAATACCCGTACCCCCTCTCAATCACGCCGAACATTTG 757923 24 100.0 41 NNNNNNNNNN .....A...C..G.AG.A.TG..A GTTGCTCTAACCGTCTTCGGCACCACATTTATGTTCTTGAA 757988 24 100.0 1 NNNNNNNNNN CG.AG....CA.G.AG.A.TG..A NNNNNNNNNN ========== ====== ====== ====== ========== ======================== 88 24 42 GAATACAATAGAAAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [75.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [319,197] Score: 0/0.18 # # Final direction: F [5.18,0 Confidence: HIGH] >NC_011766 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 768270 24 100.0 43 GCGAAAAACG ........................ TTAATCTACTTCGTCCTCCCGCTGGCAATGCTGGTGAGAATAT 768337 24 100.0 41 GTGAGAATAT ........................ TAGATTTTATCCATGGGCCTTAAATCCAGTTGGCTGGGGCT 768402 24 100.0 39 GGCTGGGGCT ........................ ACATATGCCCGGGGCGGGGGCCTGATTCATTTTGAAGAA 768465 24 100.0 42 TTTTGAAGAA ........................ CATGTAATCACCCTCTATCATCACCAATAGAGGTTAATGAAA 768531 24 100.0 45 GTTAATGAAA ........................ CTGTAGTTGTTTCGGGTACGGCTTCAAACAGTCCACTAGTAGCGT 768600 24 100.0 42 CTAGTAGCGT ........................ CAAGTCCGGCTTCGCGCCGATCTACGATGTCATAGGCAAGGT 768666 24 100.0 TAGGCAAGGT ........................ TAAAGAGTCT ========== ====== ====== ====== ========== ======================== 7 24 42 GAAGCAATAATGAAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.83%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [416,157] Score: 0.18/0.18 # # Final direction: F [4.68,0 Confidence: HIGH] >NC_011768 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 6093236 29 100.0 32 NNNNNNNNNN ............................. AAACATGCAGCCCAGATTAAGCTTTGACACGG 6093297 29 100.0 32 NNNNNNNNNN ............................. ATCGCTTAGCGCCTCCAACGGGTACGGGGGTT 6093358 29 100.0 32 NNNNNNNNNN ............................C CAGGCAGTGACCGCCGGGACTGTTGTCATTCG 6093419 29 100.0 32 NNNNNNNNNN ............................C CTGCTGTCACCCTTGTTTAGGTTTAAGGGGCT 6093480 29 100.0 33 NNNNNNNNNN ............................. GCTTTTCCTCGGAGTTTAAAGGGGCTTTTGACG 6093542 29 100.0 32 NNNNNNNNNN ............................. ATTCCGTGCATGACACAATGGATAGAAAGAAA 6093603 29 100.0 32 NNNNNNNNNN ............................. CCTGCTTCCCGTGCCGCGTCGAGCACGCGTTG 6093664 29 100.0 32 NNNNNNNNNN ............................. ACAACTTCTTTCCACATATAACTATTTCGTCT 6093725 29 100.0 32 NNNNNNNNNN ............................. GTCAGGCGGTTTTTGGCGGCGGTTCACGAGCT 6093786 29 100.0 32 NNNNNNNNNN ............................. CATCCGCGCCATAGCCGAGCATGTGGTTTTTG 6093847 29 100.0 32 NNNNNNNNNN ............................. TGCTTCCGGCTTAGGGAGTCTGGCAAAGGATA 6093908 29 100.0 32 NNNNNNNNNN ............................. TGCGGATGGATTGGCTACGCGGTCCCCCGGGG 6093969 29 100.0 32 NNNNNNNNNN ............................. ATGGTTGTGAAACAGTTGATGAAGCAGTTCAG 6094030 29 100.0 33 NNNNNNNNNN ............................. CCTTTATAGGTTCCAAGACCACGGATAAAATGG 6094092 29 100.0 32 NNNNNNNNNN ............................. ATTGTAGGAATCTAAAAGGGTAGCGGCTCCGA 6094153 29 100.0 32 NNNNNNNNNN ............................. GGAGCATGTGGTGGAGGTTCAGGTGGGAGTGG 6094214 29 100.0 32 NNNNNNNNNN ............................. TCTCAAGATCAGCACGGAAATGATCCAGGAAA 6094275 29 100.0 32 NNNNNNNNNN ............................. CCGGCACGGATTCCATCAGCGGGACCACCCTG 6094336 29 100.0 32 NNNNNNNNNN ............................C CTTTTGCATCTGCTCTACAATGGGTGGGCGTA 6094397 29 100.0 32 NNNNNNNNNN ............................. CAGCTTCTTTGAATCGCTAACTGAGGTAATTG 6094458 29 100.0 32 NNNNNNNNNN ............................. GACGTATTCGGCGGCCCAGCCATTAAGCCAGT 6094519 29 100.0 32 NNNNNNNNNN ............................. GGTGCGAGTCCCCGAGCCACAGATTCCAGGGT 6094580 29 100.0 32 NNNNNNNNNN ............................. AGATGACGTAGATCACGCCCCCCTTTGATTTG 6094641 29 100.0 32 NNNNNNNNNN ............................. ACGACATTGATGCGGGGTTTGTAGCCCATGAG 6094702 29 100.0 32 NNNNNNNNNN ............................. CTTTGAACAAACTAACTTTATGGAGGAAAACA 6094763 29 100.0 32 NNNNNNNNNN ............................. GAAAAAGACTTTTTTATTGATCGCATTATGCC 6094824 29 100.0 32 NNNNNNNNNN ............................C CCCTCCAGGAGGAAAAGAAGAAGGCCAAAGGC 6094885 29 100.0 32 NNNNNNNNNN ............................C ATAGTTTGTTTTTACTGGGGCAAGTGGTGTGG 6094946 29 100.0 32 NNNNNNNNNN ............................. CATTTCGAGTTTGTGAAAGAGTTCTTGGCTTC 6095007 29 100.0 32 NNNNNNNNNN ............................. TTGTTCAATTGTGCTATCGAGTTTTTCCCAGG 6095068 29 100.0 32 NNNNNNNNNN ............................A TATATCAAACAACTTTTATCAGGAACACTGGG 6095129 29 100.0 32 NNNNNNNNNN ............................. TCCTGAAAGAAGCCGAACTCAGTCCTGATGGC 6095190 29 100.0 32 NNNNNNNNNN ............................C AAAGCATAGATCGTGTCTGAACCGGTTGCAGA 6095251 29 100.0 32 NNNNNNNNNN ............................. TCCTATACCGCCAAGCTGGACGGTGAAGCCCT 6095312 29 100.0 32 NNNNNNNNNN ............................. CAGGCTGGCCTGGGCGCTTGGGTATCTGGGTT 6095373 29 100.0 32 NNNNNNNNNN ............................. AGTCCCGTCCAAAAGCATTGATCCCCGTTGCA 6095434 29 100.0 32 NNNNNNNNNN ............................. TTGGGTTGATCTCCCCGTTCTCGCCGTCCCTG 6095495 29 100.0 32 NNNNNNNNNN ............................. ATATGTGTAGCAAAAACGCTTACGGGACCGGG 6095556 29 100.0 32 NNNNNNNNNN ............................. CTCTTTCAGGGGATCGCATGTCGCCTCTTTAA 6095617 29 100.0 32 NNNNNNNNNN ............................. GTGTCCTCTCCAAGCCTTAGCGAACTTGCGCT 6095678 29 100.0 33 NNNNNNNNNN ............................. AGGGAAAACCACGGACGGCATACACAGGCTTAA 6095740 29 100.0 32 NNNNNNNNNN ............................. CTTGCAGGACAGATGGAGGACATCCTGATATG 6095801 29 100.0 33 NNNNNNNNNN ............................. GGCCTTGGGCGAATGTCCGTCATGTGATCCTCA 6095863 29 100.0 32 NNNNNNNNNN ............................. CACTTCGTCCCCATCCTCGCCCATGAGGGTGT 6095924 29 100.0 33 NNNNNNNNNN ............................C CCTGGGCGAGGCCGTGGACTCCATGTTCAAGGA 6095986 29 100.0 32 NNNNNNNNNN ............................C ATGGCGGCCATCAACGCGGCGGCGACGCCTGC 6096047 29 100.0 33 NNNNNNNNNN ............................. TCGATTTGCTGGTTCATGGTTTCCACCCAATCG 6096109 29 100.0 32 NNNNNNNNNN ............................. ATGTCCTACAGCGCCAACATCAACCTGAAGGA 6096170 29 100.0 32 NNNNNNNNNN ............................C CTATTCAAGATTAGGCATATCTTCGGGGGGAT 6096231 29 100.0 32 NNNNNNNNNN ............................. GGGAGTGGTGACGGAATTGTCGGGGATGTATT 6096292 29 100.0 32 NNNNNNNNNN ............................C CATTTTCAGGCACCATGCTAAAAGCCCCGTGT 6096353 29 100.0 32 NNNNNNNNNN ............................. TTTATTTTGGCGGTCGCGTTTGGGTTAAAAAA 6096414 29 100.0 32 NNNNNNNNNN ............................. CCGTGCTCCACTTTTAGAGTGACCGCCCGATT 6096475 29 100.0 33 NNNNNNNNNN ............................. GACGGGCGAGGCCGGGTTAAGCTCCGGCTATCG 6096537 29 100.0 33 NNNNNNNNNN ............................. GGGAGTATATTGGAGTCAAGATCAAGGCAGGGA 6096599 29 100.0 32 NNNNNNNNNN ............................. TCTCAGGCATTTTATTCTCAGCGTTTATGTGC 6096660 29 100.0 32 NNNNNNNNNN ............................. TTGTGATAGTTATAGAAGCAGAAAACGGGGAA 6096721 29 100.0 32 NNNNNNNNNN ............................C ACCTGTCCAGGCTTGTGAGTACGGACGATCTT 6096782 29 100.0 32 NNNNNNNNNN ............................. CTTCACTTGCTCCAACTGTGAACAGTGCAAAG 6096843 29 100.0 32 NNNNNNNNNN ............................. GCGGATCCTGCTGTTATCTCGCAGGCATACGA 6096904 29 100.0 32 NNNNNNNNNN ............................C GTCGACTACAGTGCCGTCAATGGCCTTTGGCT 6096965 29 100.0 32 NNNNNNNNNN ............................C GTTCCCGAAAGCGGTGGCGTTGTTTTCGGCTC 6097026 29 100.0 32 NNNNNNNNNN ............................C GGATGCGGCGAGCCGGTAAAAGCCGCCGGTCT 6097087 29 100.0 32 NNNNNNNNNN ............................. ATGCGCAAATGCCTCCCTCTGTATGGGGGGAG 6097148 29 100.0 32 NNNNNNNNNN ............................. CCACCCAAGGGGGACCGGAAGCCTGGAAGTGA 6097209 29 100.0 33 NNNNNNNNNN ............................. TGTTTTGAGCAATGGGCCGCTGCGCCGTTTTCG 6097271 29 100.0 1 NNNNNNNNNN .....................TGT.G.GG NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 67 29 32 GTCTTCCCCACGCCCGTGGGGGTGTTTCT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-10.90] Score: 0/0.37 # Array degeneracy analysis suggestion: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [56.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [46,1467] Score: 0.18/0.18 # # Final direction: F [0.68,0.55 Confidence: LOW] >NC_011769 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 2444693 32 100.0 35 NNNNNNNNNN ................................ GTACTGTACCCCGGCGAGCGCGAGGTGCTGGAATC 2444760 32 100.0 34 NNNNNNNNNN ................................ CACATGCCGTCGTGGATTTCGCCCTTTGTCAGCC 2444826 32 100.0 33 NNNNNNNNNN ................................ CTCAAGCAGTCCCCAGCGGGTGCTGTGTCGTGG 2444891 32 100.0 35 NNNNNNNNNN ................................ ACTCACAGCGTCACCCCCAGGCTGGCGAGAAGGCC 2444958 32 100.0 35 NNNNNNNNNN ................................ ATCCTCGGTCGCCTTGACGATGTAGACCTTGTTGC 2445025 32 100.0 35 NNNNNNNNNN ................................ GCCTCTGCCGTGCGCCAGTACGCCGCCGACAACAA 2445092 32 100.0 33 NNNNNNNNNN ................................ AAGCCGTACAGGGTCTTCCAGTTCCAGCGGTGC 2445157 32 100.0 33 NNNNNNNNNN ................................ ACGCCACCGGCCAGCATCGGCGCGGTCGGTGAC 2445222 32 100.0 33 NNNNNNNNNN ...........G.................... CGGCAAGGCGACGCGCATGCGCAACCACAGGAT 2445287 32 100.0 34 NNNNNNNNNN ................................ ACACCACCGGTGCCGCTGGACACGCATAGAATGC 2445353 32 100.0 35 NNNNNNNNNN ................................ CGCGAGGTACGCAGGGTGCTGCACCCAACTGGCAC 2445420 32 100.0 35 NNNNNNNNNN ................................ GTGCAGGTGCGTCCGTTGAACCAGTGGTGGGCATG 2445487 32 100.0 34 NNNNNNNNNN ................................ ATGTGCTGGTCCGACACGGCAAGGGAAGCTGCTG 2445553 32 100.0 34 NNNNNNNNNN ................................ CGAAACACCATGGACGGACAAGAGCGGCTGCCGC 2445619 32 100.0 33 NNNNNNNNNN ................................ TTGCGCTCCGGCCAGAGCATGACGCACCGCGTC 2445684 32 100.0 34 NNNNNNNNNN ................................ CTTTTTGCGTGTGGTCGGTTAATCTGGCCTCATG 2445750 32 100.0 34 NNNNNNNNNN ................................ TCCATGAACCCGTCCATCGCGGTCATCGTCCCTC 2445816 32 100.0 34 NNNNNNNNNN ................................ CCCCCAGCTCACCGCACAGGGCCTGCACACGCCC 2445882 32 100.0 35 NNNNNNNNNN ................................ ACTCGCAAGCTGGCGAGGCGCAGTCGCCACCTTGG 2445949 32 100.0 36 NNNNNNNNNN ................................ CCCTGTACGCGGCTACACCACGCGGTACAGCCACAA 2446017 32 100.0 34 NNNNNNNNNN ................................ AGCGACTTCCTTCGCCGCCTCGCTGGCGTTGATG 2446083 32 100.0 34 NNNNNNNNNN ................................ TGGATGACGGACGAAAGACCTTCCGGTGTGGTGA 2446149 32 100.0 34 NNNNNNNNNN ................................ AATCGAGGTATTGATGGAGTCGAAAGCCGACTTG 2446215 32 100.0 32 NNNNNNNNNN ................................ AAGCCCCGAGAAGAAGAGGTGCGCATCCCCGA 2446279 32 100.0 33 NNNNNNNNNN ................................ AGACCGTGAACCTCGGCAAGACGACCATCCCCG 2446344 32 100.0 35 NNNNNNNNNN ................................ ACCGATGCGCGGCCCGTCAGTGAAAAGAATCCCGC 2446411 32 100.0 33 NNNNNNNNNN ................................ CAGACAGTCTCCCCAAGCGCGTCGCCGAAAGTC 2446476 32 100.0 33 NNNNNNNNNN ................................ CGCCTCGGCGACCACGGCTGCGGTGGTGCTGGT 2446541 32 100.0 34 NNNNNNNNNN ................................ GCAATTGACCTACGCATCCGCGTTCCAGTTGGCG 2446607 32 100.0 33 NNNNNNNNNN ................................ GGCACCGCAACGGACCTGATGCTGGGTTATTAC 2446672 32 100.0 33 NNNNNNNNNN ................................ ATGCGGCAAGCTCCTTGGACAGCAGGTAGTTTG 2446737 32 100.0 32 NNNNNNNNNN ................................ CACGGGTGGCGGCCCCACGGCTTCGCACCCCA 2446801 32 100.0 35 NNNNNNNNNN ................................ TGCATCAGGGCGTCGCATGCCTTGGCCGTCCAGCC 2446868 32 100.0 34 NNNNNNNNNN ................................ GGCAAGATCTACGTCGAAGAAGACCCCTCTACCA 2446934 32 100.0 34 NNNNNNNNNN ................................ CCCACATCCCTGACGAGTACATCAACATCGACCT 2447000 32 100.0 33 NNNNNNNNNN ................................ CGGCAAGCCCGTCCCGGTGGATCAGCCCATGGG 2447065 32 100.0 34 NNNNNNNNNN ................................ ATGTCCGCCTACTACGGCAACGACGCCGTGCCCG 2447131 32 100.0 34 NNNNNNNNNN ................................ TCCCGGCTTCTAGCCCCGCCGCACGTACCGTCCC 2447197 32 100.0 35 NNNNNNNNNN ................................ CCCGTCGTCGTTGGTTTCCTTCAGGACCAGCACCT 2447264 32 100.0 33 NNNNNNNNNN ................................ AGGCGCGGCCCGGCCTGCGTCCACGTCAGCAGG 2447329 32 100.0 34 NNNNNNNNNN ................................ ACCGTGGCAAACCCGCACTCGCGGTGGTTGTTGC 2447395 32 100.0 34 NNNNNNNNNN ................................ GCAGAGTGTGCGAAGGGCCTTTGTAGCCCCTTCC 2447461 32 100.0 34 NNNNNNNNNN ................................ GTCTTCACCGCTCACGGGGCGCAGCCCCTCCCCG 2447527 32 100.0 34 NNNNNNNNNN ................................ GCCGATAACCTGTGCGTCCACCCTGAAGCCCGCC 2447593 32 100.0 34 NNNNNNNNNN ................................ ATGCCGGGCATGGGGGACACGGTGGCTGGCCAGG 2447659 32 100.0 34 NNNNNNNNNN ................................ ATGCCGAGGAACACGTCAGTGGCATCCGTGGTGT 2447725 32 100.0 36 NNNNNNNNNN ................................ CGGTGGTCGCCCCGTAGTGGTGCGTGGCAGCGGCAG 2447793 32 100.0 35 NNNNNNNNNN ................................ CCTGCCCGAGGCGCAGACGCCCGTGGTCATCTCGC 2447860 32 100.0 34 NNNNNNNNNN ................................ TTCCATGGCCCTGCATGTCAGGAAGTCACCGGAG 2447926 32 100.0 34 NNNNNNNNNN ................................ ATGGTCCAGTGCGACCGCTGCGACACCATCACGG 2447992 32 100.0 33 NNNNNNNNNN ..............A................. ACGGCCTCATGCACCGAGGCCGCAGTGGCGTAG 2448057 32 100.0 31 NNNNNNNNNN ....................A.A..A.CGTGG CCATCATGGCCGTCTGTGCGTGGCTGATCGA 2448120 32 100.0 1 NNNNNNNNNN ...A..............TGCA.ATAGA..CA NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 53 32 33 GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [1-21] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [188,107] Score: 0/0.18 # # Final direction: F [1.15,0 Confidence: HIGH] >NC_011830 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================= ====== 2346028 33 100.0 36 ACTTTTTGCT ................................. AGGTCGTTGGCAACCTTGTCGTCGCTCCGGTCAAAC 2346097 33 100.0 34 CCGGTCAAAC ................................. TGGTTCTCATGAGTGGTCAGGGCGCGGGGGGATG 2346164 33 100.0 35 CGGGGGGATG ................................. TCCTCCTCGGCATCCTGAGGCCCGCGCCATTCGTA 2346232 33 100.0 35 GCCATTCGTA ................................. ACCCTAAGCAGCTCCCTCACCGTCACAAGCGCATC 2346300 33 100.0 34 CAAGCGCATC ................................. CGGGCATGTCTGAGGACAACCAAAAGCTAATGGA 2346367 33 100.0 34 AGCTAATGGA ................................. TATTTCGGACGGTAGCATGACAACTACCGCTAAG 2346434 33 100.0 33 TACCGCTAAG ................................. TCTGTCCTGAAGTAGTCCAGGTCATCACCGCTG 2346500 33 100.0 35 ATCACCGCTG ................................. ATGCTTTGCACCTCCTCCCTACAATCCAAATGTGC 2346568 33 100.0 33 CCAAATGTGC ................................. TCGTATTCCACGAGGAAGTGACTGACTCCATGA 2346634 33 100.0 33 GACTCCATGA ................................. CGCAGTACATAAAGGAGTGGCATGACTATGTAA 2346700 33 100.0 33 GACTATGTAA ................................. GCTGATAACCCGGCGAATGGAGATACCCTCACC 2346766 33 100.0 35 TACCCTCACC ................................. TCCACCAGTGCGGCCACATCGGCCTTGACCTCATC 2346834 33 100.0 33 TGACCTCATC ................................. ATGTAGAAAATGTTGGGGTGGAGGAGAGCGTGT 2346900 33 100.0 34 GAGAGCGTGT ................................. AGGCAGATCGATGTAAATACCGCCACCTGGGGAT 2346967 33 100.0 33 ACCTGGGGAT ................................. TGTCCGGATACGAAGTTGGTCTCAGTAGCAGTG 2347033 33 100.0 35 AGTAGCAGTG ................................. TTAAATGAGATGACGAATTTTGCAGGCTCGACTCC 2347101 33 100.0 33 GCTCGACTCC ................................. CGCGGGCAACGGCATATTCTATGATAGAGTAGA 2347167 33 100.0 36 ATAGAGTAGA ................................. AAACGGGTTAGCTGTATCCCAATGCTCCACAATGTT 2347236 33 100.0 33 CCACAATGTT ................................. AAGCGAATCATTTTGATTGGTTAATAATTCAAC 2347302 33 100.0 33 ATAATTCAAC ................................. AAGCGAATCATTTTGATTGGTTAATAATTCAAC 2347368 33 100.0 36 ATAATTCAAC ................................. TTTCGGATACTTTAGCCACAGTTTGGGCCTCCTTAA 2347437 33 100.0 34 GCCTCCTTAA ................................. TGGAGCCTGTGGCTGTGAGTGGAGTAGACGGCAT 2347504 33 100.0 34 TAGACGGCAT ................................. CCGGCAGTCCGCTGGGGCTTATCATCCTCATGTC 2347571 33 100.0 34 TCCTCATGTC ................................. CGGCCCTCGGCCACTATACTTTAACCGAACTGGA 2347638 33 100.0 34 CCGAACTGGA ................................. ATCAAGGCGTCCTGCCCATCGGCTTTACGGCCAA 2347705 33 100.0 34 TTACGGCCAA ................................. CCACTGCTAAGATATACTTTAAAAATCAATGGGT 2347772 33 100.0 33 ATCAATGGGT ................................. AGCTTTTCCTCAACGTCTAATTTTAAAATTGGA 2347838 33 100.0 34 TAAAATTGGA ................................. TAAGTGCGACAACACAATGAAGGGTTTCATTTTT 2347905 33 100.0 35 TTTCATTTTT ................................. ATTATACTTCAGGAAATCTTCCGAATCCTCTATCA 2347973 33 100.0 36 TCCTCTATCA ................................. ATATTGTCTTCGTTGGGACAACTGCCAATAATTATG 2348042 33 100.0 34 AATAATTATG ................................. AATGGAAATATCAACGTTGATTATGAGTGGGAAT 2348109 33 100.0 34 GAGTGGGAAT ................................. CCACATGATCAGCGAACAGGTCTACAGCTGGAAC 2348176 33 100.0 33 CAGCTGGAAC ................................. TTTGGTACAATTGGATTCTTTCTAGCAATGTCA 2348242 33 100.0 36 AGCAATGTCA ................................. GAAGCTAAAGTGAAGGATTTATGGAACCATACTCCT 2348311 33 100.0 36 CCATACTCCT ................................. CGGCGAGGATCGTGTCGGCATGGGGCGCAACCGCAA 2348380 33 100.0 36 GCAACCGCAA ................................. CGTGGATGAGGCTGAGGCGGCGTTGAGGGAGGTGCG 2348449 33 100.0 36 GGGAGGTGCG ................................. TTTAACTCAGGCTATGTTGATTACCTGGATGCCAAC 2348518 33 100.0 36 GGATGCCAAC ................................. AAAAGAGACTCGGGTTAGGGCATGCACCCTTGGGGG 2348587 33 100.0 34 CCCTTGGGGG ................................. GGGGGAACAGCAAACGATGGGCAAAATCAGCTAC 2348654 33 100.0 34 AATCAGCTAC ................................. AGTAAAGCCCAATAGCGTAGGAGTGCCTCCGGTA 2348721 33 100.0 34 GCCTCCGGTA ................................. TAAAGTACTTTAATAGATGGCTTAAGTCAAATAG 2348788 33 100.0 35 AGTCAAATAG ................................. CAGCCCTCCCTGCTCTGGTGACTGGAGTGGCCATA 2348856 33 100.0 33 AGTGGCCATA ................................. CCTCTCGGGTGGACCGACTTAGATGCCTAGGGA 2348922 33 100.0 36 TGCCTAGGGA ................................. TGCGCGTGGTCTTGCAAAGGGAAGCAGAGCTGCCAA 2348991 33 97.0 35 GAGCTGCCAA ............G.................... TCCTTGCAGCATGGTGTGGCCTCCGCAGGGGTGAA 2349059 33 97.0 35 CAGGGGTGAA ...............G................. AAGGCCATTAACGCGAGTGGAAAGCTTACGGATTA 2349127 33 93.9 37 TTACGGATTA ............G........A........... AACGTGTTAGGAACTAATGGGCGCTTTGCTCTTAATC 2349197 33 97.0 GCTCTTAATC ....A............................ AAATAGGAG ========== ====== ====== ====== ========== ================================= 48 33 34 GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.55%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-6.30,-6.10] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [196,79] Score: 0.18/0.18 # # Final direction: F [5.36,0 Confidence: HIGH] >NC_011830 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================= ====== 2361841 33 100.0 35 ACTTTTTGCA ................................. CCTATGGGATGGACAGATATAAATTAACCATGTCG 2361909 33 100.0 33 AACCATGTCG ................................. AGCTGAAAATCTATCTGCCGCCCTGACTTATTT 2361975 33 100.0 36 TGACTTATTT ................................. GTCACTGAATCAGCGGTTACTATCACTGCAGGGGTA 2362044 33 100.0 34 TGCAGGGGTA ................................. CGGGCAGTGCCGGCTTTGTACTCCATCCAGCGCG 2362111 33 100.0 34 ATCCAGCGCG ................................. TGTCCGGATACGAAGTTGGTCTCAGTAGCAGTGA 2362178 33 100.0 36 GTAGCAGTGA ................................. TCGTGAGGGATTCCATGATTTCAGCTCCGGTAAAGT 2362247 33 100.0 34 CCGGTAAAGT ................................. TATTTCGGACGGTAGCATGACAACTACCGCTAAG 2362314 33 100.0 34 TACCGCTAAG ................................. AAACGACTGAATACGTAGACACGGCGAAAACGAC 2362381 33 100.0 34 CGAAAACGAC ................................. CCCGGGGACGTACTGCCAAGCCTTGTTGAAATCT 2362448 33 100.0 35 GTTGAAATCT ................................. AAATCGCTCAAGCAGTAACAGTTCGGATTTGTTGG 2362516 33 100.0 35 GATTTGTTGG ................................. TTTTCGTCCAAATCGGGTGCCTCGTGAGGCCTGAC 2362584 33 100.0 34 GAGGCCTGAC ................................. TTTTTCTGCACAGCAAGCCACGCATAAAACTCCT 2362651 33 100.0 33 TAAAACTCCT ................................. CCTGGGGGCTTAGTGATTAAGCCGTCAAGGATA 2362717 33 100.0 33 GTCAAGGATA ................................. CGTCAGCGCCTTTGCCGACAGGCTTTCCGATAT 2362783 33 100.0 33 TTTCCGATAT ................................. TGACCCTCGCTGCCCACCAAGTTGGCCATACGG 2362849 33 100.0 36 GGCCATACGG ................................. TATAATGTTTTTCATTAACTCTATAGGTTTTTCAGA 2362918 33 100.0 34 GTTTTTCAGA ................................. TGTCATTCCACAATAAGCACAGGCATCTCCAAAA 2362985 33 100.0 35 ATCTCCAAAA ................................. ATTGTCAGGATTGTACGTTACACACCAATGCCAAT 2363053 33 100.0 33 CAATGCCAAT ................................. TAGAATTTGTGGTAACGCCTTTTCTAATCTTTC 2363119 33 100.0 34 CTAATCTTTC ................................. GAATACGCAAAGGTGATTTTTGAATGCGAGAAGG 2363186 33 100.0 36 TGCGAGAAGG ................................. TGCCGGTTCCTGCCCATGCCGACACGATCCTCGCCG 2363255 33 100.0 35 ATCCTCGCCG ................................. CGTCCTACCTGATTGAGAAACGCAATATCAAAGAA 2363323 33 100.0 34 TATCAAAGAA ................................. CCTCCAGTCTTTATCAACCTCAGCCGGGGTTTCT 2363390 33 100.0 36 CGGGGTTTCT ................................. GCTCAATCTGCAAAAGGTGATGAGCGCAATCCGCAA 2363459 33 100.0 34 CAATCCGCAA ................................. ATAAAGGCCAACACGATAGCAAACAAGGCGACAT 2363526 33 100.0 33 AAGGCGACAT ................................. TGCAGCATACTCGGCAATAAGGGACTCAAAGAA 2363592 33 100.0 35 ACTCAAAGAA ................................. CCAAAGCCAAACAAACATATACCGGGAATCGGACG 2363660 33 100.0 34 GAATCGGACG ................................. ATCAGACTGGCCGAAGAGATGAAGAATCCTATTG 2363727 33 100.0 33 AATCCTATTG ................................. AATCGATTGGTCCATAGAGGCAAAAATCTCTTT 2363793 33 100.0 35 AAATCTCTTT ................................. TGGATCGCACGAGTGGTCAGGGCGCGGCGGGCTCC 2363861 33 100.0 34 GGCGGGCTCC ................................. AAGGCTGCTTGTAATATGGAAAGGCGCTGGAGAG 2363928 33 100.0 35 CGCTGGAGAG ................................. TTGCCCTCCTTCGAACACCTTACTTTGCAGGTCCC 2363996 33 100.0 34 TGCAGGTCCC ................................. ATTTTTACAAACCAGTTGACAATCTCCGCATGAT 2364063 33 100.0 33 TCCGCATGAT ................................. CCAGGCGTGCCTTGGTTAAAGCAAGAATCTGAG 2364129 33 100.0 34 AGAATCTGAG ................................. TGTTGGGACAAATCCGCGCCGGCCTGAAGATTTG 2364196 33 100.0 34 TGAAGATTTG ................................. CTGATCCGGAAGTCTATATTTATCAAAATCAGGA 2364263 33 100.0 33 AAAATCAGGA ................................. CGTATAGGGTAGCAAAGCTCGTTATCGAGTGCG 2364329 33 100.0 35 ATCGAGTGCG ................................. TTGGGCAAGAGGCGGACCTTAGCGGAGCCAAACAG 2364397 33 100.0 35 AGCCAAACAG ................................. AGCCCATTTGTATGAATAGGGTCGGCCTGTCTTGG 2364465 33 100.0 37 CCTGTCTTGG ................................. CCCGCATGAGCCACAAACATGTCTGATGCACACGCAC 2364535 33 100.0 33 GCACACGCAC ................................. ATACCGTTTACAGGCATCATATCTTTGCTTATG 2364601 33 100.0 34 TTTGCTTATG ................................. ATACACGCTATTATGACCGGGGAAATGGGGGAGC 2364668 33 100.0 34 ATGGGGGAGC ................................. TGATACATAAAGTTATCGATGTAGGTTATGTTAT 2364735 33 100.0 37 GTTATGTTAT ................................. CCACCTGATAGGTTTTGGTTGGTCGGAAGTCCTTTAA 2364805 33 100.0 33 AGTCCTTTAA ................................. ACTTTATCTACTTTACTCCTACTGGTGTACTAA 2364871 33 100.0 33 GGTGTACTAA ................................. ACTTTATCTACTTTACTCCTACTGGTGTACTAA 2364937 33 100.0 34 GGTGTACTAA ................................. TGAAAAGCTCTATTACAGCTGCCTCAAAGGCATC 2365004 33 100.0 34 CAAAGGCATC ................................. GCCACACTCATGGATAAAGCTAATGCCAATAAGA 2365071 33 100.0 36 GCCAATAAGA ................................. ATTGCCGGCTTGCCAATCCTGATGATAGCCTGCAGA 2365140 33 100.0 34 AGCCTGCAGA ................................. TGAAGTGTCGTGACCACCCCGGCTGTTAGGCCAC 2365207 33 100.0 35 GTTAGGCCAC ................................. TCCGCACTGGGAATGCCAATCATATTGACTCTGGC 2365275 33 100.0 33 TGACTCTGGC ................................. CTGCTCAATCATAGTCAACTCATCTACCCAACT 2365341 33 100.0 35 CTACCCAACT ................................. GCCTATAGCCGCTGTGTCTTCCAGATTATACGCTG 2365409 33 100.0 36 TTATACGCTG ................................. AGCAACTATTTAATCATTCTTCTGAGCGTCAGACAC 2365478 33 100.0 35 CGTCAGACAC ................................. CCCGTTTTCGTGGGACCAATACCAGATATCCGCCC 2365546 33 100.0 34 ATATCCGCCC ................................. TCGCATACTACCCGATACCGCAGAGCGTCAGCAA 2365613 33 97.0 33 GCGTCAGCAA ............G.................... TCTATTCGAGAGTGGGCTTGATACCAATTCCGA 2365679 33 97.0 CCAATTCCGA ............G.................... ACAACATGGT ========== ====== ====== ====== ========== ================================= 58 33 34 GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [7,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.10,-7.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [170,265] Score: 0/0.18 # # Final direction: F [0.64,0 Confidence: HIGH] >NC_011830 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 4165531 29 89.7 36 TCTGATTGGC --..........C................ TTTAATACGGCAAATGGAAGAGACCGCAGGACATAA 4165596 29 100.0 38 CAGGACATAA ............................. CTTTTGCCCAATTTTCTCTACATGAGTGTGGATGATAT 4165663 29 100.0 37 TGGATGATAT ............................. CCATCCTTGAGGTCACGGAGTTTTTGAGTCATGTTTA 4165729 29 100.0 36 GTCATGTTTA ............................. CAAACCGCTCAATTTTCACCCGAAGCTTCTGAAAGC 4165794 29 100.0 37 TTCTGAAAGC ............................. CAAACACCAGGCTGGCCGAACTGGCGGCGCTCATATG 4165860 29 100.0 38 CGCTCATATG ............................. CTCGGTGTGCTTTTGGGATTGCCCAAAAACGCATTTGC 4165927 29 100.0 38 ACGCATTTGC ............................. CTGTGGGGTTGGAGCCGGTGCGTATGGCTTCCAGCAGG 4165994 29 100.0 TTCCAGCAGG ............................. CCATTTTACC ========== ====== ====== ====== ========== ============================= 8 29 37 GTTTCAATCCCTTATAGGTAAGCTAACAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.52%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [523,144] Score: 0.18/0.18 # # Final direction: R [0.18,5.28 Confidence: HIGH] >NC_011830 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 4179283 30 100.0 39 NNNNNNNNNN .AAAAGG.CA..T.............T... GATAATTTGGGTTTTCTGAGCGCAAGATCACTGTTGAGC 4179352 30 100.0 38 NNNNNNNNNN ........C..................... TGGAGAGGTGTTATAATTTATCGGGGAACCCGTAAATG 4179420 30 100.0 35 NNNNNNNNNN .............................. TTAGCTTTTGTTATGTACCCTGATGACCTCGATGA 4179485 30 100.0 37 NNNNNNNNNN .............................. TGTTCCCCCACTTGTTCTACATGTGTCGCAAGATCAT 4179552 30 100.0 36 NNNNNNNNNN .............................. CGAAGGCACCTTTGGCACAGCCTCGACAGGACGAGC 4179618 30 100.0 38 NNNNNNNNNN .............................. CTCTTCGAGAGAGAAGAAGAAGGCGATATCCTTCTCCT 4179686 30 100.0 35 NNNNNNNNNN .............................. TGCTTCCTCAAAGACGATCTCTTTGGTGAGCAGCT 4179751 30 100.0 37 NNNNNNNNNN .............................. CCTATTGCAGTCGGTGTTAGCCATTTAGTATTACCTG 4179818 30 100.0 39 NNNNNNNNNN .............................. CCGTACACCTCGTAGGCATCACTATAGCGGATTCTATGG 4179887 30 100.0 34 NNNNNNNNNN .............................. GTGTTGAAAAAGCAGTATTGGACAGGTGGGAGAT 4179951 30 100.0 36 NNNNNNNNNN .............................. TAGGATGTCCTGAATACGAAGAGCTGCTGATTCATT 4180017 30 100.0 36 NNNNNNNNNN .............................. CGGTGGCACATAATGGCTTTGCGCCCGGGCAGATTT 4180083 30 100.0 38 NNNNNNNNNN .............................. GATGGCGGCCATTTCAGCCAGAACATTACCGGGCGGGA 4180151 30 100.0 39 NNNNNNNNNN .............................. TACCCACCTTCTTGGGGGCCTGTTTGCCATTCTTTTCTT 4180220 30 100.0 37 NNNNNNNNNN .............................. GGGACTAAGGAATCTCACATTTTCAGCGATGACCTCA 4180287 30 100.0 36 NNNNNNNNNN .............................. AGGCCAGACATGGCAGCGACGTAAGATTGATTTTGG 4180353 30 100.0 39 NNNNNNNNNN .............................. GAAGTCGAGAAAAACACGCCGGTTGACACGAAGGAGCTT 4180422 30 100.0 36 NNNNNNNNNN .............................. TGTGATAGGTTTTAGTGATGCTTATAGTTTGTTCTT 4180488 30 100.0 35 NNNNNNNNNN .............................. GTGATGAAAAACGATCCCTCACACTTGAAGAGCAG 4180553 30 100.0 36 NNNNNNNNNN .............................. TTAATAGGCCTGATGTATTGTCCTCAACAGGCTTAT 4180619 30 100.0 38 NNNNNNNNNN .............................. AATCTTACCACCGTAGACAGGAGTCCAACCAGATAGAA 4180687 30 100.0 38 NNNNNNNNNN .............................. GTCAACATATGCCTCTGAGTCTTTGCCGTCCGCAATAT 4180755 30 100.0 38 NNNNNNNNNN .............................. TTCCTATGAGCAATATCATATTATCACGGATATTGCGT 4180823 30 100.0 38 NNNNNNNNNN .............................. CGGTAATAAAGCAAGAACGTTAACCGCGAGGCACGATT 4180891 30 100.0 38 NNNNNNNNNN .............................. AGTAGTGTATTGGGTAGTTGGACGGTATTGCAATATAG 4180959 30 100.0 35 NNNNNNNNNN .............................. AAAGGCAGGGATTTTTTTACCTTGCCTAGATTATA 4181024 30 100.0 37 NNNNNNNNNN .............................. GGAGCGTGAGGGCCACAACGACAACAAAGGTCACTGG 4181091 30 100.0 39 NNNNNNNNNN .............................. AGCTAATCCACATCCCCACAGGCAGGCCGGTCATGGTGA 4181160 30 100.0 35 NNNNNNNNNN .............................. CTTATGGACCACAGGGCCAGGGCAAGGCTGCGGTA 4181225 30 100.0 40 NNNNNNNNNN .............................. GGGAAACGAACTCTATGAGTTTGTAGAAGGATTATCGCCA 4181295 30 100.0 35 NNNNNNNNNN .............................. GCAACGTCAATCACCCTCAGTGTCTCTTTTCTGAA 4181360 30 100.0 36 NNNNNNNNNN .............................. TGATCTTACTCATGCGGGAGGTTTTGAGGAAATCGT 4181426 30 100.0 35 NNNNNNNNNN .............................. TAGGTACAACGAAAAGGCTTACGATAGAATAGAAA 4181491 30 100.0 35 NNNNNNNNNN .............................. ACAGGTCAAAGGATTACATCGATAGGCTTTGCGAT 4181556 30 100.0 37 NNNNNNNNNN .............................. GAAAGTGAGGAAGGCTCAGTATGACAGAACGTGAGAT 4181623 30 100.0 39 NNNNNNNNNN .............................. ATGCAGTCTTTTGAGTTATGAGGGCTTTGAGGATTGTGT 4181692 30 100.0 35 NNNNNNNNNN .............................. TCCGTCACTATCATAGGGGATGGGGTGGGACTTGC 4181757 30 100.0 37 NNNNNNNNNN .............................. CTCCTTATGTGTTATCTACCAGGAGTACGAGGATATA 4181824 30 100.0 34 NNNNNNNNNN .............................. TCGCCATCCTAATCCTCCTTTTCTTCCTGCTTCT 4181888 30 100.0 37 NNNNNNNNNN .............................. ATTGAAAGGCTTGCTTTATCGTGTATCATGTACTTGT 4181955 30 100.0 36 NNNNNNNNNN .............................. CAAAAAATTTGGAAAGCTTATGGACAAGGTCTCGAA 4182021 30 100.0 34 NNNNNNNNNN .............................. TCGGGTCTTAGGGTTTTGGATTTTACCTCACGAT 4182085 30 100.0 35 NNNNNNNNNN .............................. CATGGAAATAGGCCGAAACATAGCGAAATATCGGA 4182150 30 100.0 38 NNNNNNNNNN .............................. TTGCAAAATACGTCCCCGATTTGTGAGGATTAATCCTC 4182218 30 100.0 34 NNNNNNNNNN .............................. ATGTATTTGCCGTGGTCCTGGTTAGGTTGGTGAA 4182282 30 100.0 36 NNNNNNNNNN .............................. TCCCGGTTGTCGAGAAAGATGGGCGCCGATACTCCG 4182348 30 100.0 36 NNNNNNNNNN .............................. TGCCTGTTAGCTGCGCCAGTTCATCTATGCTCATGT 4182414 30 100.0 35 NNNNNNNNNN .............................. AAGTATCTTAGGCGTTAGGAGGTACACACAATGGC 4182479 30 100.0 35 NNNNNNNNNN .............................. ACAATCAGGGCGCTCAGAAAGGTAAAAATAAAGCG 4182544 30 100.0 35 NNNNNNNNNN .............................. TTAGCTAAACTCTACGGGGATGGTCGGCCATTGGA 4182609 30 100.0 35 NNNNNNNNNN .............................. TGAGATAAAATACAAAGTTCCACCGATATCAAAAA 4182674 30 100.0 34 NNNNNNNNNN .............................. TGCCCCCACACTGAATAGGCAAATAGCATATTGA 4182738 30 100.0 36 NNNNNNNNNN .............................. GGGGAATTTAGAATCCTCATGATTGGCCATAAGAAG 4182804 30 100.0 38 NNNNNNNNNN .............................. AAGACGTTCACGCGATGTCGCAGCGCCATAATCACAGG 4182872 30 100.0 36 NNNNNNNNNN .............................. GGAACCGCATGAAGATTTATTTATGCCAGAGCGAGA 4182938 30 100.0 39 NNNNNNNNNN .............................. CTGGCCAGCGCCTTTGACGGAGCGTTTGAACTGGCGGAA 4183007 30 100.0 37 NNNNNNNNNN .............................. GAGGCGCGGAAGGATCTATGCCCACGAAATGAGTGAT 4183074 30 100.0 39 NNNNNNNNNN .............................. GTCTACCCCGTGATCAGGAATGATGGAAAGGAAGTGAGA 4183143 30 100.0 36 NNNNNNNNNN .............................. TACACTCACTCCATTATCACTTACGATGTAAAAGCC 4183209 30 100.0 36 NNNNNNNNNN .............................. TTCAAATACCTTCTTCACATGCTCATCTGAACAGGC 4183275 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 61 30 36 GTTTCAATTCCTCATAGGTAAGCTAACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [425,409] Score: 0/0.18 # # Final direction: R [0,5.78 Confidence: HIGH] >NC_011830 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 4173056 30 96.7 39 AGGTACAGTC ............................C. TTTTCGACCGAATCCACTGGTTGGATATTCGCTTCAATG 4173125 30 100.0 37 CGCTTCAATG .............................. TCTGAAGCAGTTTCGAAGATCAAAGCGGAAATGACCG 4173192 30 100.0 35 GAAATGACCG .............................. TATAATCATAGTATAAACTTTAATAATCCTAGTGT 4173257 30 100.0 37 ATCCTAGTGT .............................. TTGAGGACTACTACAAAAACCTCTATTTGCAAACCCC 4173324 30 100.0 37 TGCAAACCCC .............................. GGGCTTGCCGGCCAAGACGGAAATAAGGCAAACATTA 4173391 30 100.0 35 GCAAACATTA .............................. ACAACGAGGATGAATGGATATCTTACTATGAGTCC 4173456 30 100.0 33 CTATGAGTCC .............................. TGGTCCCGCGAAGAATACCGACAGAGTTATGAG 4173519 30 100.0 37 GAGTTATGAG .............................. CCTCAATATCGGGGCCAGGATGGATGCGATGACAACG 4173586 30 100.0 36 GATGACAACG .............................. TTAAATCGTTGAGAGCATCCTGATACTGTTTGCGCG 4173652 30 100.0 38 TGTTTGCGCG .............................. CCAGAGATCTCCGGGACCTTTTTAGCCCCTGTTGGAAG 4173720 30 100.0 35 CTGTTGGAAG .............................. ATTTTTATCTCAGGAGTTGATGAACTTGATTAGAT 4173785 30 100.0 37 TTGATTAGAT .............................. CTTGCTCGATTGCCGTATATGATGGCTTTATCTACGG 4173852 30 100.0 36 TTATCTACGG .............................. CGGCGGGAACCGGGGCTGCTTTTTTATTGACTTCTT 4173918 30 100.0 36 TTGACTTCTT .............................. TATGCGTTTTGATTTTTTGGTTTTCGGCGGAAGCAG 4173984 30 100.0 35 GCGGAAGCAG .............................. GCTGGAAACGACTGATTTCTATACAGCGCCATGTT 4174049 30 100.0 35 GCGCCATGTT .............................. AAAAAAGAAAATCCAACTCAAGCCACCGAGGAATC 4174114 30 100.0 CCGAGGAATC .............................. CCATTTTACC ========== ====== ====== ====== ========== ============================== 17 30 36 GTTTCAATCCCTCATAGGTAAGCTAACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [61.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [252,187] Score: 0/0.18 # # Final direction: R [0.27,5.28 Confidence: HIGH] >NC_011831 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================================= ====== 3342947 39 100.0 37 TAAACGCAAG ....................................... CGCAAATTTTCTCTCCAAGATCGCACGCGCAAATTGC 3343023 39 97.4 36 CGCAAATTGC ......................................G GCCGTCGTTGGTGAACCACGGGAGGAAGCATTATTG 3343098 39 100.0 AGCATTATTG ....................................... TCTCAGTAGG ========== ====== ====== ====== ========== ======================================= 3 39 36 GGCGCGAAGGACGCAGAGCACGCAGAGGTTTTTTGTTGT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [8,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.10,-2.30] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [40.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [102,69] Score: 0/0.18 # # Final direction: R [0.41,0.64 Confidence: LOW] >NC_011831 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 4194733 36 100.0 44 TGTGGTACCC .................................... CTGATACCGTACGATATACGGTGTACAAGATAATGTACAAGATC 4194813 36 100.0 41 GTACAAGATC .................................... CCCAGATACCGGGGGCACTGTTGACCTCGAACACAAGTACC 4194890 36 100.0 42 CACAAGTACC .................................... CCGCGGTAGCCGTCCATTGCAAAAATGCCGTAGTGCGTCTTT 4194968 36 100.0 42 GTGCGTCTTT .................................... CTCTAGAACTCCACCAGAGCTTGCTCCGCCATGCGGATAAGC 4195046 36 100.0 41 GCGGATAAGC .................................... CTGTACAGTATGTACACTGTACGTACACCAACAAATACTTG 4195123 36 100.0 43 CAAATACTTG .................................... CGAAAGAGCTACGGAACAAGCTATACTCCTTTGATATTGGTGA 4195202 36 100.0 39 ATATTGGTGA .................................... CCCAGACTGGAAGCTGCCATCCCAAAAGCGGCAACGTTT 4195277 36 100.0 37 GGCAACGTTT .................................... CCAATATCAAACGAGACACTGCCGACCTCCTCGTTAT 4195350 36 100.0 41 TCCTCGTTAT .................................... CCGGTTTGTACGCGACCACTCATCGAGTACTCGTTGGATAC 4195427 36 100.0 42 CGTTGGATAC .................................... CATGGGAGGATCGATCGCAGTCTTACTAAAACGACCCCATCC 4195505 36 100.0 40 GACCCCATCC .................................... CTTAAAGAAGCCGTTCTGCAGGGTACCGACCTCTATAAAG 4195581 36 100.0 40 CTCTATAAAG .................................... CGGCAGGAACGCCGTTTACGACCGTGTACACCGACACTTC 4195657 36 100.0 42 CCGACACTTC .................................... CCGGTATGATCCGGCAACGAATGTATCCGTTACTGGATCGTC 4195735 36 100.0 42 CTGGATCGTC .................................... CCGGTATTATCCATACCGTTGACAAACAGGGCATATGCCTGC 4195813 36 100.0 39 ATATGCCTGC .................................... CTGGAGATGGCCGCACCATACAAGTGCGGCCATCTCCAG 4195888 36 100.0 39 CCATCTCCAG .................................... CTCATATGTCCCTGCTTGCAACAAACTGCCTGACTCCGA 4195963 36 100.0 43 CTGACTCCGA .................................... CCTGAGAGCCAGCCCTGACGTCCTTTCTCCCTCAGTGAGGCAA 4196042 36 100.0 41 AGTGAGGCAA .................................... CCACCATTCCGTCTCGCCCCCGCAACCGACGGAGCATCCCA 4196119 36 100.0 42 GAGCATCCCA .................................... CCGACGGTTATGTCGTGGATATTAAAACGGGAAAGCGAGTAG 4196197 36 100.0 44 AAGCGAGTAG .................................... CGTAGCGCAAACGGTGGTTGGATGGGCTGCACCCATACGTCGAG 4196277 36 100.0 38 ATACGTCGAG .................................... CTTGTGCTGGAGCGCGAGTTGGAGCAAATGTACATTCC 4196351 36 100.0 46 TGTACATTCC .................................... CTGATGATGTCGTCGAAGTAATCGAGTTATAAAAAAAGAAGGAGGA 4196433 36 100.0 42 AGAAGGAGGA .................................... CTCGTTTGTTAGCGATACCGTTGTCGACCAAGCAGACCAACT 4196511 36 100.0 43 CAGACCAACT .................................... CCGATGGTCAAGGCTCTATGTAAGGAAGTCCCTAGCGCCTTAC 4196590 36 100.0 40 AGCGCCTTAC .................................... CGTACCGCGATGCGTGGTGGTGGTTATTGCTGCTTTTTGC 4196666 36 100.0 44 TGCTTTTTGC .................................... CGCTATCATTCTTTGGAGATCACCGGCGAGCAACTCCTGCTTTT 4196746 36 100.0 41 TCCTGCTTTT .................................... GGTATTTGTAATTGTTTTCGCTAAGCCGGAAATTGATTTAC 4196823 36 100.0 39 ATTGATTTAC .................................... GTTGACGAGGGCTGCACGGCTGGAAGCCGGAGTCTCTCC 4196898 36 100.0 40 GAGTCTCTCC .................................... GCGGTTGAGGAAGTACCTCCTCATACTGTGCTCGCGTTCC 4196974 36 100.0 41 CTCGCGTTCC .................................... GACAGAATACCGACACACCGGTTCGACCGCTGGTGAAACCG 4197051 36 100.0 42 GGTGAAACCG .................................... GCGATCAGATAACAGTGTTCGGAGAGCCGGATTACCTTTGCC 4197129 36 100.0 44 TACCTTTGCC .................................... GTCGAAAACAGAGACCGCGTTGCTAAACGCGGTCAAGGCACTCA 4197209 36 100.0 43 AAGGCACTCA .................................... GAGGCGAGAGACATCGAGGTGAGGGGAACGAGTATCTGTATAC 4197288 36 100.0 42 ATCTGTATAC .................................... GTCATCATCAACCGCATTGCTGATTCGGATCATTGTTTGCAT 4197366 36 100.0 38 TTGTTTGCAT .................................... GACACACATCGCCCTTTTATACCCGCCGACACTCATTC 4197440 36 100.0 42 ACACTCATTC .................................... GTTGAACACCGTCCGGTTGTTGGCGGTAGCCGTCACCGTGTC 4197518 36 100.0 40 TCACCGTGTC .................................... GACTCTTCGGTTGTCAGATATGACCACGGCGGCATCATAC 4197594 36 100.0 44 GGCATCATAC .................................... GCAACGTCTCTGCCACGCAGTGCGGAGATACGTCGATGTTAACA 4197674 36 100.0 40 GATGTTAACA .................................... GCGCCTGCACACTAAACCCGACACCACATCCCAACATGAG 4197750 36 100.0 40 CCAACATGAG .................................... GCCTTGTCAGCCGTCCATGGGTGGCTGGCCGTGGTGAGCC 4197826 36 100.0 39 GTGGTGAGCC .................................... CATATTATCCCACTCAAGGTCAAGCAACGCCTTGTTCCA 4197901 36 100.0 39 CCTTGTTCCA .................................... CGATCAGATGAATCAACTTAAGATACTGGTGTATGCTCC 4197976 36 100.0 42 TGTATGCTCC .................................... CGAACAAAGTCACGATTGCAGCAGACCAGAAACCTGCTGCAA 4198054 36 100.0 38 CCTGCTGCAA .................................... CACATGCTGCTGCTCAACCGCGCAGCGGAGTATGCTGC 4198128 36 100.0 40 AGTATGCTGC .................................... CACACCGGCACAGCGGGTCGCACAGAACCGTCATGGGTAC 4198204 36 100.0 43 TCATGGGTAC .................................... GCTTCATTGCTACTGGCCACGACGTGGACGGCCTTGTCAGCCG 4198283 36 100.0 39 TTGTCAGCCG .................................... GGTGTTACTGATCATGATTGCCGTTTGCATCGTTTTTTC 4198358 36 100.0 42 TCGTTTTTTC .................................... GCGGCAGGACGTACCGGCAGAACGTACCGACAATACAAGAAC 4198436 36 100.0 41 ATACAAGAAC .................................... GTTCAACGGTGCTCGTTCTGCCCACCGTATTGCCCCTTTCG 4198513 36 100.0 43 GCCCCTTTCG .................................... GGGAAGTACTCGGCGCGCGCCTCCATGATGGCTTCCAACGGGT 4198592 36 100.0 42 TCCAACGGGT .................................... GTGCAGACGCACGTCGGTGGTTGGTACGGCTTACCGTTTCTG 4198670 36 100.0 44 ACCGTTTCTG .................................... GTACTGCACTATCCTATGCTCCTCGTGTAGACGAGAAGCACAGG 4198750 36 100.0 41 GAAGCACAGG .................................... GAACACCGGTGAAAAAACCCGCATGTGCGCGGTATACGTTG 4198827 36 100.0 39 GTATACGTTG .................................... CAATAACTTGATGAGCGTCTGGCGACGCTCATCATTGCG 4198902 36 100.0 43 CATCATTGCG .................................... CTGACTAATGCTGTCACGCTCGTTATCGATCACGCCGCTGTGC 4198981 36 100.0 39 GCCGCTGTGC .................................... CGAAAAATTATTGTTATCGTCGCATCCATATTATTATCG 4199056 36 100.0 39 ATTATTATCG .................................... GTTAGTTGAGAGATTGGCTGCCCCGGAAGGGCGTAGTCG 4199131 36 100.0 43 GGCGTAGTCG .................................... CCCAATAAAAAAACGGTATTTACTGCTTCCATACCGGTATCCT 4199210 36 100.0 41 CCGGTATCCT .................................... CTTATTGCCAGCCGGTCAAATTCGGCAAGCACATCTTCAAT 4199287 36 100.0 41 CATCTTCAAT .................................... CCCGTACTTCACGGGGCGACCGACCACAAGGTCGGTTTTTG 4199364 36 100.0 45 TCGGTTTTTG .................................... CCGGCTTCTTTGTAATCGACCGATACCGATCCATCACAACATGAA 4199445 36 100.0 42 ACAACATGAA .................................... CACGACACAATGTCGACGCATCCCCCACCATTACCCCGCGTG 4199523 36 100.0 41 ACCCCGCGTG .................................... CGTACGTTATCGCGTGGTTGACGGTAGGACTGTTGGTGTAC 4199600 36 100.0 41 GTTGGTGTAC .................................... CGTTTGAATAAGGGGCATCTGTAAAAAGTCCCCCAGCGCCG 4199677 36 100.0 39 CCCAGCGCCG .................................... CGAGGCATGGCAGATACTCGATAGACGGACGTTTATGAC 4199752 36 100.0 41 CGTTTATGAC .................................... CTGAAAACAATTGACTTGACAAGTAATTTGACAAAAAAGAC 4199829 36 100.0 45 CAAAAAAGAC .................................... CCTGATCCGTTACCAGTGTCCAACCGTTGACACTGGTATTTGTCA 4199910 36 100.0 44 GTATTTGTCA .................................... CACCGCGATGGCGGCACTCATCGCGGTTACGATCGGTTTTTACT 4199990 36 100.0 47 GGTTTTTACT .................................... CTTATTACGGAACAAACCATGCGTCGAAAAACCGATGTCCTGTAGAC 4200073 36 100.0 43 TCCTGTAGAC .................................... CCCCGGTCTGGGTACGCTAAGACCACAAACATTGAGACATTAT 4200152 36 100.0 41 GAGACATTAT .................................... CTTTATTTCTTATAGTCCTTTAGCGTCTCCCTCCAGTTTGG 4200229 36 100.0 40 TCCAGTTTGG .................................... GATCATAAATTGTTGTAGCGACCGGAAATATCCGGTCTAA 4200305 36 100.0 40 TCCGGTCTAA .................................... CCCGAACGTATGTTGTTGCAAGCACCTCGCTTGCCTTTGT 4200381 36 100.0 42 TTGCCTTTGT .................................... CTGTATACGCTATCGTTGCGGGTGTACCGATCACGCCTTTCG 4200459 36 100.0 40 ACGCCTTTCG .................................... CGCAAACACCCGCATATTCGCGGTATACGTTGTCATATCG 4200535 36 100.0 41 TGTCATATCG .................................... CTATCATGTCTCGTAATAAAAGTGATACCTGCCACCTCAAA 4200612 36 100.0 43 CCACCTCAAA .................................... CGCTGCGTAATTATGTTGAAGTACTCGGCGCAAGCGGTATCCG 4200691 36 100.0 40 GCGGTATCCG .................................... CCCCTGCGTTTTTTGTCACTATGTATACATCGGAGTCGGT 4200767 36 100.0 40 CGGAGTCGGT .................................... CGACTCATCAACACATAAAGATCGGGGTCTGGTGAGCGGG 4200843 36 100.0 41 GGTGAGCGGG .................................... CGCATCTTTGAGCGCCTTGACGGCGCCCAAAAGTGCCTTTT 4200920 36 100.0 42 AGTGCCTTTT .................................... CTTCCTATTCTTATCGGGTTCTACGACTTTGACCGTTTCTCC 4200998 36 100.0 45 CCGTTTCTCC .................................... CAAGAAGGCACTGGATACATTTTTACTCCAGCCGGTTAAGTTTGG 4201079 36 100.0 43 TTAAGTTTGG .................................... CCTTCTCGGTGCTCCGGTAGAGTACTTGTTACCAATGCCTCGG 4201158 36 100.0 36 AATGCCTCGG .................................... CCTTTCTCATCGCTGGCCACAACGTGGACGGCTTTA 4201230 36 100.0 43 GACGGCTTTA .................................... CAGATATGGCATTCGCCGTCTTGTATTGGTAACATACTTAGCC 4201309 36 100.0 40 ATACTTAGCC .................................... CGGACGTTCTCCAAACGCGCATGAGACACAACCCATCAAC 4201385 36 100.0 39 ACCCATCAAC .................................... CCTTGCACAATCGACTGCTCCAATGTGGCGTCTGGGTAC 4201460 36 100.0 40 GTCTGGGTAC .................................... CTAAGCTTTCGTTGACGTTGGAATATCGGTATAAGATAAC 4201536 36 100.0 43 ATAAGATAAC .................................... CCTGCCGTCTCCGGCTCCTGCGCCGCTGCCTGTGCTAAGGCAC 4201615 36 100.0 40 GCTAAGGCAC .................................... ATGCCGATATTGTTGCCTCCTATACACCTGGGTCGTTTGT 4201691 36 100.0 GGTCGTTTGT .................................... CCAAACGGCAGGAACACCGTTTGCAATTGTTTGTACCGTTGC ========== ====== ====== ====== ========== ==================================== 91 36 41 CTTCAAAACACCAAAATCCCCGTGAGGGGATTGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-10.40,-9.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [40.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [150,2892] Score: 0.18/0.18 # # Final direction: F [4.87,0.45 Confidence: HIGH] >NC_011831 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 688005 36 100.0 36 GAAGCACTGA .................................... CCGACTGCACGAATGCGTGCAACTCGGCGTCCGATG 688077 36 100.0 39 GCGTCCGATG .................................... TTGTACCTATCGTCGGATGATCCAAACCCTGGCCGCCCG 688152 36 100.0 37 TGGCCGCCCG .................................... TCCGCGCGTTGGCGGCGGTCTGCGCGGTGCGGTGCGG 688225 36 100.0 37 TGCGGTGCGG .................................... CTCCATGCTCATCTTCCGTGATCGTCGTCATCAGCCG 688298 36 100.0 39 TCATCAGCCG .................................... TTGTACCTATCGTCGGATGATCCAAACCCTGGCCGCCCG 688373 36 97.2 TGGCCGCCCG ...................................G CCGGCAACC ========== ====== ====== ====== ========== ==================================== 6 36 37 TTTCAGTGCTCTACCGTGAGCCGAAAGTATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-5.60,-5.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [53.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [60,12540] Score: 0.18/0.18 # # Final direction: F [5.18,0.18 Confidence: HIGH] >NC_011831 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 689334 37 100.0 35 NNNNNNNNNN C.................................... ACGTGTGAAACATATCCGTACTCGCGTACAATTGA 689406 37 100.0 36 NNNNNNNNNN A.................................... ACGGTTTAACCAACGAGCGAAGCGCGCATGTTCAAG 689479 37 100.0 37 NNNNNNNNNN ..................................... CCAACCGCGACGATGTACGCAGCCGACGCCGTCCAGA 689553 37 100.0 35 NNNNNNNNNN A.................................... ATATCAACACTAACTCGCGTACTTATGCATCGTGC 689625 37 100.0 40 NNNNNNNNNN A.................................... ATGACACGGAGTACCAGCCCTCGTCTCGTTGGTATCAGTA 689702 37 100.0 38 NNNNNNNNNN ..................................... AATGCGGATGAGTATCGCGGCGCCAGCTAAAATAAGCC 689777 37 100.0 36 NNNNNNNNNN ..................................... TCGGCAGGAATACTGCCGATACCAGTACCAATATCA 689850 37 100.0 37 NNNNNNNNNN ..................................... TAGACAGGCGCACGTTTATGACCAACGCGCGACACTA 689924 37 100.0 37 NNNNNNNNNN ..................................... TCCATTGTTTCTTCTGTTTCTTCCGGTTCTTCCGTAT 689998 37 100.0 35 NNNNNNNNNN ..................................... TCTTGACCCGCGCCGACATGAAATTGTCCTTGTGT 690070 37 100.0 36 NNNNNNNNNN ..................................... CCGAGCGACTATCACTTGCGCAGCAACAGCTTGAGC 690143 37 100.0 38 NNNNNNNNNN ..................................... TCTTCCCCAATCTCCATATGTACTACCTCCCTCCCGCC 690218 37 100.0 36 NNNNNNNNNN ..................................... TTTTTCCTGCGCCCCCTGAGATGTTTGGAATTTTCT 690291 37 100.0 36 NNNNNNNNNN ..................................... TAGCGGTAGGTATTATGTCCGTCGTATTATCTCAAT 690364 37 100.0 36 NNNNNNNNNN ..................................... CGCTGTCGTCATAAGCGTCTAACCGAAGCGTGTCAT 690437 37 100.0 38 NNNNNNNNNN ..................................... CAGCGACGCGGCGCGCCACATTTTCATCTTCTTTTGTA 690512 37 100.0 37 NNNNNNNNNN ..................................... CTCTTAAAGAGTGTGTTATAATAAAGCTGCGTTGGTT 690586 37 100.0 35 NNNNNNNNNN ..................................... ACAAGTGATAGTCCGACCTGCCACGCGCGAACAAC 690658 37 100.0 35 NNNNNNNNNN ..................................... CAAAAATATCGGTTCGGTGTAGCGCGACAATCGAA 690730 37 100.0 37 NNNNNNNNNN ..................................... AACCAAGCCAACCCTAATGAAAGGGTTGGTATGACGA 690804 37 100.0 38 NNNNNNNNNN ..................................... ACAGCACCTGTGCTGCCGTGTCCGGCTGTGATGCCGCT 690879 37 100.0 38 NNNNNNNNNN ..................................... CGATGACGGCATCGCCGCGTAGTTGCACCACAAACCGC 690954 37 100.0 38 NNNNNNNNNN ..................................... CTTGACGTATACGACGGTATATGTACACCCATGCCGAC 691029 37 100.0 36 NNNNNNNNNN ..................................... TACCGGGAAGCATTACGTTTGAACGTAATGTGACAG 691102 37 100.0 38 NNNNNNNNNN ..................................... CTAAAGTATCATGACGTGTCGTGTTAATCTGTGAAACA 691177 37 100.0 39 NNNNNNNNNN ..................................... TCACCGATGTTGTGTAGTGTTGCGCCAACCAAGATGTGA 691253 37 100.0 37 NNNNNNNNNN ..................................... GTCATATTTGACGTAAGACGTGTACGTAAACAGAAGA 691327 37 100.0 35 NNNNNNNNNN ..................................... TTCCCGTCGGACAACGGGTGCGTGTGACCATTCAA 691399 37 100.0 37 NNNNNNNNNN ..................................... GCATACCAACAATTGCAAGCGCAACAATTAAACACAC 691473 37 100.0 37 NNNNNNNNNN ..................................... GCAACGAACTACAACGATTGCAGAACCAACAGTTTGT 691547 37 100.0 37 NNNNNNNNNN ..................................... AAACATCTTTCGTTCCTTGTTAAGCGAACGGCTGACA 691621 37 100.0 37 NNNNNNNNNN ..................................... AAACATCTTTCGTTCCTTGTTAAGCGAACGGCTGACA 691695 37 100.0 36 NNNNNNNNNN ..................................... CATGACCGTTGTGGTAGACATCTCCCTCGACGCCGT 691768 37 100.0 34 NNNNNNNNNN ..................................... CTGCTGGCGAGGGCGCTTTGGCGCACGATTTCGG 691839 37 100.0 40 NNNNNNNNNN ..................................... AGATCGCCCGGCTGGTGAACGCGATCACGGGATACTGGAA 691916 37 100.0 36 NNNNNNNNNN ..................................... GTGGCGGGGATCACCATCCCGTACCGACCGAGCGCC 691989 37 100.0 38 NNNNNNNNNN ..................................... TATACCTCATAGTAGCAAGCTGCGCCTGTATTACTGTT 692064 37 100.0 35 NNNNNNNNNN ..................................... CAATACAAGACCGACCGCTCCAATAACAAGCGGAT 692136 37 100.0 36 NNNNNNNNNN ..................................... ATAAAAATCTGTTCCACCGTTTTTTACCTTCGCGCA 692209 37 100.0 38 NNNNNNNNNN ..................................... CGTATCCGGCCGTCGCGTTAGAGGGCGTGCCGGATACG 692284 37 100.0 35 NNNNNNNNNN ..................................... CCCTAATCTTACTCTCATCTTCGCCTCCTTCGTTT 692356 37 100.0 35 NNNNNNNNNN ..................................... CAATACAAGACCGACCGCTCCAATAACAAGCGGAT 692428 37 100.0 35 NNNNNNNNNN ..................................... CGTTCTGTTTTGACCCTTCTTGTCACCGTACCGTG 692500 37 100.0 35 NNNNNNNNNN ..................................... TCGGCGGTTCATACGTTTACCGGGGTAACAATTAC 692572 37 100.0 36 NNNNNNNNNN ..................................... GAGTAATCGCCTTCTGCCCACCACACGTATGATCCG 692645 37 100.0 38 NNNNNNNNNN ..................................... TTAGATCGTCGGACATTCATGACGAACGCGCGGCACTA 692720 37 100.0 36 NNNNNNNNNN ..................................... AATATTATCTGCGCAGGGTACCCCACCTGTTATGGT 692793 37 100.0 36 NNNNNNNNNN ..................................... AATATTATCTGCGCAGGGTACCCCACCTGTTATGGT 692866 37 100.0 38 NNNNNNNNNN ..................................... TGCTGCTTGCACACGTACGCGCAGGGCATCGCTCCACC 692941 37 100.0 37 NNNNNNNNNN ..................................... CCGTTGGTCGGCAGACAATACCGGGGGTCCCGGACCC 693015 37 100.0 38 NNNNNNNNNN ..................................... AGCGAAGACCTTCGATATTAGCCAACAGATACTTGCCA 693090 37 100.0 39 NNNNNNNNNN ..................................... TCTGCCGCCGTCCACGGCCACTTCGCCGCTTGCTCTACC 693166 37 100.0 35 NNNNNNNNNN ..................................... TCGACCCGACCACCGGGATCGCGCTCCCCACGGCC 693238 37 100.0 38 NNNNNNNNNN ..................................... AAGGCTAATGGCTAACGGTATTGATAACGAACTCAGAC 693313 37 100.0 39 NNNNNNNNNN ..................................... GAAACAAAGTGGTGCGCAGCGGCGCGAACCAAACTCTCA 693389 37 100.0 37 NNNNNNNNNN ..................................... GTGGAATGTGCTTGGTGAAACGAAGACGGATCGTCGC 693463 37 100.0 39 NNNNNNNNNN ..................................... CCATCCGTCCCGTCGCCGCTGCCACCGATGACAATCACC 693539 37 100.0 36 NNNNNNNNNN ..................................... GATTCTTCCTCCGGTTCGTTGACGGGACGGGTTCCC 693612 37 100.0 36 NNNNNNNNNN ..................................... TCAAGCTGCCCTCCGGCAAACGGATCCATTTCAAGC 693685 37 100.0 38 NNNNNNNNNN ..................................... AGCGCCCGCAGGAGTGTCAGCATGCGCGGGTCGGTGAG 693760 37 100.0 37 NNNNNNNNNN ..................................... TTGGAGATGCTTTTTACAATAGACTCGATTGTATCGT 693834 37 100.0 38 NNNNNNNNNN ..................................... GGGACGGATGGCGACCCGGTGCTTGTCGTCGGTGGCAG 693909 37 100.0 37 NNNNNNNNNN ..................................... TACCCATACACAAACCAGCGATCTGCCGGCTGGTACT 693983 37 100.0 36 NNNNNNNNNN ..................................... GGCGCTCGCAAAGCGCGCGAGGCCTTGACAGCGGTT 694056 37 100.0 36 NNNNNNNNNN ..................................... ACGTTGACTTTTTCGACATTTTTGTTATTCCTACGC 694129 37 100.0 37 NNNNNNNNNN ..................................... CGTATGCAAGCGCGAAGTCGTACACGCGCACGCATAC 694203 37 100.0 34 NNNNNNNNNN ..................................... CTTGAAGTTCGCTATGTATTGGATGAGGAAAGAT 694274 37 100.0 39 NNNNNNNNNN ..................................... CCAAGCCAATCGCTTATCAACCCAAGACGATTCGATCCA 694350 37 100.0 37 NNNNNNNNNN ..................................... CTGGATGCGTACTACCGTATCCGGCGATATGTGCGCG 694424 37 100.0 36 NNNNNNNNNN ..................................... GGGTTGGCTTGGTTCTTATTCGCTGTTGCACGCAGG 694497 37 100.0 39 NNNNNNNNNN ..................................... CTGCGCCGCGCTCGGCCAGTTCGAGGCCGAGCCGAAAAC 694573 37 100.0 34 NNNNNNNNNN ..................................... CCCAATCGTGCCCGCAGGAACGATAGACAGCGCA 694644 37 100.0 40 NNNNNNNNNN ..................................... CTGTTTATAGATGCTACGCCGCGCGAGCTGAAGACATTCT 694721 37 100.0 35 NNNNNNNNNN ..................................... CAGTCGTGTCCCCATTACGCGCTTTAACTCGTATT 694793 37 100.0 35 NNNNNNNNNN ..................................... CTCCACCGAACGCACGTAGCGCGACAGCGGCAGAA 694865 37 100.0 38 NNNNNNNNNN ..................................... TCTTGATCACCATAAAGGTACTGATACCAGCGCGACGA 694940 37 100.0 35 NNNNNNNNNN ..................................... CTCCACCGAACGCACGTAGCGCGACAGCGGCAGAA 695012 37 100.0 38 NNNNNNNNNN ..................................... AGTCAGCAATTTGGCAGCGGGAGCCGACTCCTGATCGA 695087 37 100.0 38 NNNNNNNNNN ..................................... GACTCCGCGCTCCAGCTCTCCCCCGCGCACATCGACGC 695162 37 100.0 36 NNNNNNNNNN ..................................... TTGGCCGATTTGAAGATCGAGGAGCTAACCGATCCT 695235 37 100.0 35 NNNNNNNNNN ..................................... CGAGATGATCGGTTGGTGGCAGCAGCACGGCACGC 695307 37 100.0 38 NNNNNNNNNN ..................................... TTTTCGGACCTCCGCAGCGCTCGTCTCCTCCTGGTCGC 695382 37 100.0 37 NNNNNNNNNN ..................................... CTACCGGGTGGTCATGCCCAACGGCATGACCTACGAG 695456 37 100.0 39 NNNNNNNNNN ..................................... ACGGTACATGCGCGATTGAGGCAATATCCCATCTGGGAA 695532 37 100.0 37 NNNNNNNNNN ..................................... AAATGAAACATATAACAATGACAATGCCGTTGCGTTC 695606 37 100.0 37 NNNNNNNNNN ..................................... GCAACGATCTGGCCAAGCTGCTGCAACAACGGGCCGG 695680 37 100.0 37 NNNNNNNNNN ..................................... CGCGAGATCGAACCGCCAGCGTCGCGTTGGGTGGAAG 695754 37 100.0 35 NNNNNNNNNN ..................................... GATAATGAGCGATTTTGGTGTTGCATCGCTGTAGC 695826 37 100.0 38 NNNNNNNNNN ..................................... TCTCCGACACGCGATTGTTATCGATCCTAACCGTTGCC 695901 37 100.0 37 NNNNNNNNNN ..................................... TCGAGCGCTAATTGCTGCACGTCCGCAAGCGAGCGCC 695975 37 100.0 36 NNNNNNNNNN ..................................... AAGTTATATTCCCCACGATCAATCACCCGGAAGTCG 696048 37 100.0 35 NNNNNNNNNN ..................................... GCGTGACATTAGCCGCGTGATTGAGGAAATTCGGG 696120 37 100.0 35 NNNNNNNNNN ..................................... ACCAAATATGCAGCTCTGCCGCCACCTCGCCGTCG 696192 37 100.0 37 NNNNNNNNNN ..................................... CATTTCAACGCCATTTGATGCGTTATACATCCTTCTC 696266 37 100.0 38 NNNNNNNNNN ..................................... TCTCCGACACGCGATTGTTATCGATCCTAACCGTTGCC 696341 37 100.0 32 NNNNNNNNNN ..................................... TGGTGATCGCATACGCAACCGCACCGTGCTGG 696410 37 100.0 39 NNNNNNNNNN ..................................... AATAAATAGTTCATAATCTGTCACTTGTACATAGTTATC 696486 37 100.0 37 NNNNNNNNNN ..................................... CGAAGAGCGAGAAATGCTTCCCATGCCGCTTCGGTAC 696560 37 100.0 35 NNNNNNNNNN ..................................... ACTACGCTGACGCGCATGACTATTATTATCAGCTC 696632 37 100.0 36 NNNNNNNNNN ..................................... AAGTTATATTCCCCACGATCAATCACCCGGAAGTCG 696705 37 100.0 38 NNNNNNNNNN ..................................... TACAACGTAAACTGGTCGTCCGAAAGTGCGCCGATCAA 696780 37 100.0 36 NNNNNNNNNN ..................................... CAAGATGTTAAACCACAGCGTAACGCTGCGATACCA 696853 37 100.0 37 NNNNNNNNNN ..................................... CCGCGATGTGGAAATCAATCCCATGAGAACGGAGAAG 696927 37 100.0 35 NNNNNNNNNN ..................................... GCTGTCGGTAGTCATCACTATCTTCCCCACCATAC 696999 37 100.0 37 NNNNNNNNNN ..................................... CGATCATGGATCGCGTTGATGTATACCATTATCAAGA 697073 37 100.0 37 NNNNNNNNNN ..................................... CAAAGAAGGATATTGAGCGTGTCCCCCTCACGAAAAG 697147 37 100.0 37 NNNNNNNNNN ..................................... AGTAAGGGTAGTTTAGAAAGAACCAAAGATGCTGTGC 697221 37 100.0 36 NNNNNNNNNN ..................................... GTGTACAACTCAACCAAGACCTTTCCCGTAAACGCA 697294 37 100.0 38 NNNNNNNNNN ..................................... GCATCTGGGAAGGGAAACGTCGGCAATAAAGCGAAAGA 697369 37 100.0 35 NNNNNNNNNN ..................................... GTGATCGTCGTTGATTGCGCCGCGTTGCGATATGT 697441 37 100.0 38 NNNNNNNNNN ..................................... CTAGCCGGCTATCGGGTCGCTTCGATAGTTGGGCGGTA 697516 37 100.0 37 NNNNNNNNNN ..................................... CTCTTGCTTCCGGTTTTCACGAGTACCGGCAAGATGC 697590 37 100.0 35 NNNNNNNNNN ..................................... GTCCTGTTTCTTGCCGTTCCCTTGCTGCTGATCAC 697662 37 100.0 37 NNNNNNNNNN ..................................... ACGACGCGACTGCTACGACGACGCTGCGGTAGTGCGC 697736 37 100.0 39 NNNNNNNNNN ..................................... CAGATCGCGCGGCCATTGCACCGTCGCCCGGCATTGGCC 697812 37 100.0 36 NNNNNNNNNN ..................................... GGATAATACGTCTTTTTGGTACCAACGATACGTGAA 697885 37 100.0 37 NNNNNNNNNN ..................................... TGATGTATACCATTATCAAGACGGTACATGGTACGAA 697959 37 100.0 38 NNNNNNNNNN ..................................... CAGATGCTAAAACAACTGGTGCAAAAGTAACACAACGC 698034 37 100.0 35 NNNNNNNNNN ..................................... TTCTTAAAAATCGGAGGAGTTTACACTTTCGTGAA 698106 37 100.0 39 NNNNNNNNNN ..................................... ATACCGTGAAGTGCCTGTTGCCAACGTCGTATCAAAAGT 698182 37 100.0 36 NNNNNNNNNN ..................................... TCAATATTCACCAACCCATACGGCTCACCGTTGCCA 698255 37 100.0 36 NNNNNNNNNN ..................................... GCGGCATTTGTAGCGGTAAGCGCTGTTGTCGCCGTG 698328 37 100.0 37 NNNNNNNNNN ..................................... GGGTTACGCGATCCGCTGCAATTCGACTTTTACCCGC 698402 37 100.0 38 NNNNNNNNNN ..................................... TTACCCGCCGGCAGCTCTAGCCGCACCAGCCGACGCGC 698477 37 100.0 37 NNNNNNNNNN ..................................... CGTCTTCTATCTCCAGTCGCACGCGCGCGTTACCCGC 698551 37 100.0 38 NNNNNNNNNN ..................................... AGTTAAATTCGCGCTCCACCTCAACTGCCCGCACGTAG 698626 37 100.0 37 NNNNNNNNNN ..................................... CATACAAGCCAGCCGGCAGCGGAACAAACGCATCCTT 698700 37 100.0 37 NNNNNNNNNN ..................................... GCGATCGCGCTCGATGAGCAGCGTAAACTTCAGTCGT 698774 37 100.0 37 NNNNNNNNNN ..................................... CCTTATCGGTGACGACATGGCCGGATTCCGGTTGTAC 698848 37 100.0 38 NNNNNNNNNN ..................................... TGCGCAGCAGCCACGCTGCGAGCGCCGCGTCGGCGTCG 698923 37 100.0 36 NNNNNNNNNN ..................................... ATGCAGAGTATGCGTCCCTCGACGCGCTGGAGGTGT 698996 37 100.0 35 NNNNNNNNNN ..................................... TTGGCGCTGATTCCGGTTGCGACACCTTGCGCGAT 699068 37 100.0 37 NNNNNNNNNN ..................................... GCTTACGGCGGCGAGCGATCGTACCAGTCCCGAAGCG 699142 37 100.0 38 NNNNNNNNNN ..................................... GAGCCGGGGTGTGTGGCAACCTTCTTCATGGATGAGGA 699217 37 100.0 35 NNNNNNNNNN ..................................... GCCTTGTTCAGCGTCGTTGCCGTGATGTAGTGCGA 699289 37 100.0 38 NNNNNNNNNN ..................................... CTCGCGATCATCGCGGGGCAAGTCGTCGAGCGGTCGCC 699364 37 100.0 35 NNNNNNNNNN ..................................... CGTGCCCAACAAGAGTGATCACACTCTTGTTTATG 699436 37 100.0 37 NNNNNNNNNN ..................................... TCGACGCGCCGCACCGTGCGCAACTTACCACCTCCGT 699510 37 100.0 36 NNNNNNNNNN ..................................... ACTTGCCCAACTCCGCCAGCGTTGCCTCGTCGTTCG 699583 37 100.0 35 NNNNNNNNNN ..................................... AGGAGGCAGGCGAGGTACTTGAAACCGTCACCCGC 699655 37 100.0 37 NNNNNNNNNN ..................................... CGCGGCGCGCCCCTACTGCCCCGCCATACGTCTCGTT 699729 37 100.0 37 NNNNNNNNNN ..................................... TCGGCATTATGCTGAGTGTTGCGCCGGCGGCGCTGAT 699803 37 100.0 35 NNNNNNNNNN ..................................... CGGGGCGCTTGCGCTCGCGTGGCGGTCAGGAGTGT 699875 37 100.0 35 NNNNNNNNNN ..................................... GCCCCGTGCAAGTCACGCACGTATTGGACAACCGG 699947 37 100.0 37 NNNNNNNNNN ..................................... GCGTAGTATCATGGAGTAGAAGAGTATGCAGATTAAG 700021 37 100.0 37 NNNNNNNNNN ..................................... AAGGCCCCGGGACAGAAAACGGGGTCGCCGTAATGGT 700095 37 100.0 36 NNNNNNNNNN ..................................... GGCGCAACTGGCTTCGGTCGCTCCTGGCCATTGTCC 700168 37 100.0 37 NNNNNNNNNN ..................................... CAGTAGCGGAAGGCAAGATAGAACGCCAGCAGCGCAC 700242 37 100.0 36 NNNNNNNNNN ..................................... GTTTGATACGATGTTGGCCGAAACGTTGCTGCGGGC 700315 37 100.0 36 NNNNNNNNNN ..................................... ACGTCGTGGAAGAAGCAGCACAAGCGGATCAGTTCG 700388 37 100.0 36 NNNNNNNNNN ..................................... GAGTCGCGCGCGCTGCCGGAACCGTCGCCGCTGGAC 700461 37 100.0 35 NNNNNNNNNN ..................................... TGCTTTATGTTTCGTGAAGTATTCGGTCGCATGTT 700533 37 100.0 36 NNNNNNNNNN ..................................... GGCGCAATCTTCTTGATCCCCTTCACCCCCTAACCC 700606 37 100.0 1 NNNNNNNNNN ..................................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 154 37 36 GTTTCAGTGCTCTACCGTGAGCCGAAAGTATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.05%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-5.60,-5.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [45.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1389,306] Score: 0.18/0.18 # # Final direction: F [4.95,0.41 Confidence: HIGH] >NC_011832 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1642843 29 100.0 32 NNNNNNNNNN TA........T.................. TTCCGCCAATCTGCAGACACCGACGGGTTGAA 1642904 29 100.0 32 NNNNNNNNNN ............................. ATCATACTGTGCCGTTCGTCGAGGCGCAGCTC 1642965 29 100.0 32 NNNNNNNNNN ............................. CTCCCTCCAGATCCTCGTATCCTGAGCGTACT 1643026 29 100.0 32 NNNNNNNNNN ............................. CACATAAATCTGGTGGAGCGGATGCAATTAAA 1643087 29 100.0 32 NNNNNNNNNN ............................. TCATCCTGGGTGAGGAGGAACTATGAGCACTC 1643148 29 100.0 32 NNNNNNNNNN ............................. TTCGCGATCTCCCGTTGTGCAAACGCCCGAGC 1643209 29 100.0 32 NNNNNNNNNN ............................. TACAGCGTCCATCTGATTAATGATGCAGTTTT 1643270 29 100.0 32 NNNNNNNNNN ............................. CTCCGAACTCCTCACTGAGCGCAGCCGTGATC 1643331 29 100.0 32 NNNNNNNNNN ............................. CTGAGTGTTTCACACATCTCGCGGTTCGACCT 1643392 29 100.0 32 NNNNNNNNNN ............................. GAACCCCCTTCTGATTGCTTTGGGGAGGATAT 1643453 29 100.0 32 NNNNNNNNNN A............................ GATTTGAGCATTTCGATAAACTGTTCTGCGAT 1643514 29 100.0 32 NNNNNNNNNN ............................. AATTGTCGATGTTCGCGTTGATCGTCAAGAAG 1643575 29 100.0 32 NNNNNNNNNN ............................. TGTCTGGTATTTCACTGACCTCGAGCCTGGGA 1643636 29 100.0 32 NNNNNNNNNN ............................. GTGGTGTGATTGGAGGGTTCCTCTGTGTGCTC 1643697 29 100.0 32 NNNNNNNNNN ............................. AAATGGATCGATTGGGGCGCTCCCTCATAGAC 1643758 29 100.0 32 NNNNNNNNNN ............................. CTCTTGTGGCTGATGCCTGTAGAGAAGTAAAT 1643819 29 100.0 32 NNNNNNNNNN ............................. AAACAATTCAAAGTGAATCATTACCAGAACTG 1643880 29 100.0 32 NNNNNNNNNN ............................. TATCTGATAGGTTTCTGTATCGATCAAGTACC 1643941 29 100.0 32 NNNNNNNNNN ............................. CGTATTTGTGTTAAATACCGAAATATACCCGT 1644002 29 100.0 32 NNNNNNNNNN ............................. ATCATGGCTCTGGGATTTTGGAGATGGAAATA 1644063 29 100.0 32 NNNNNNNNNN ............................. GCATTGTATTGGGAAATTCACTCCAAATGGAA 1644124 29 100.0 32 NNNNNNNNNN ............................. ATCTGCTCAATCAAGCCCTTCGTCAGCGGAGA 1644185 29 100.0 32 NNNNNNNNNN ............................. TGCGAAGTACACCGCTGCCAAGGCTGACGGCA 1644246 29 100.0 32 NNNNNNNNNN ............................. GGGCTCTCGTTCGGGCAGAAGGATCAGAAAGC 1644307 29 100.0 32 NNNNNNNNNN ............................. CCGGTCGGGGTCGGTGCGAGGTTCTCAACGAT 1644368 29 100.0 32 NNNNNNNNNN ............................. TCGGCGGAGTTGGCCCCGACCAGGGCGAGGTT 1644429 29 100.0 32 NNNNNNNNNN ............................. AGACCCTTCTGATGGTCTTGAGCCATCCGTTT 1644490 29 100.0 32 NNNNNNNNNN ............................. CCATCCCGGTATTTCGTCGGCTTCCCGACCAA 1644551 29 100.0 32 NNNNNNNNNN ............................. CGAAAAAGTATAAAATGTTCTACCCATTGTAT 1644612 29 100.0 32 NNNNNNNNNN ............................. TCTGACCGATCCGGAGAGGAATGCTGAATGAT 1644673 29 100.0 32 NNNNNNNNNN ............................. GGCGTCACTGTCAAAGGGGCGAACCCGATCGC 1644734 29 100.0 32 NNNNNNNNNN ............................. GATTTTTTTAACTGTGTTGTAATCTGACGACA 1644795 29 100.0 32 NNNNNNNNNN ............................. CCAATCCAAACATGGATCGGCTGCTCCTGTGA 1644856 29 100.0 32 NNNNNNNNNN ............................. CTGAAGACGATGCTCGCGGGGCTGATTGGGCT 1644917 29 100.0 32 NNNNNNNNNN ............................. GAGATTGTCGGTTGGGATCGCACCGGTGCCGG 1644978 29 100.0 32 NNNNNNNNNN ............................. TGATGCTCGGTCTCGTCGATTGCAGTCGTCGA 1645039 29 100.0 32 NNNNNNNNNN ............................. ATGGACTTTGGAAACGAGCATCGGCGTAATCT 1645100 29 100.0 32 NNNNNNNNNN ............................. TGCGCGACCGCTCGGAAAAATTAGGGAGCGGG 1645161 29 100.0 32 NNNNNNNNNN ............................. CCGGACTGCCGGAAGCCCTCTACGACCACTGC 1645222 29 100.0 32 NNNNNNNNNN ............................. CAACAGAACCTCGCAGAGTTCGGAACGGCAAC 1645283 29 100.0 32 NNNNNNNNNN ............................. GGGGATCACCAACGTCAGGGAGGCTCTGCTGA 1645344 29 100.0 32 NNNNNNNNNN ............................. TGCCGGCCGGGGTGCCGCAGTTGTGCCGGCTG 1645405 29 100.0 32 NNNNNNNNNN T............................ GAAATTTGAGCAGGGATTCATGGTTTCGCTCC 1645466 29 100.0 32 NNNNNNNNNN ............................. ATAAGTTCATAGTAACGCTTTGTATTTAGTGC 1645527 29 100.0 32 NNNNNNNNNN ............................. GCGTAGTCAATGACGAACCCGCCGCCCCGGAT 1645588 29 100.0 32 NNNNNNNNNN ............................. GATAATGTCCCGGGTATCCTGTGTGGTTGACT 1645649 29 100.0 32 NNNNNNNNNN ............................. GCCATCACTAAATGTATGCCGGTGAGTTTTTT 1645710 29 100.0 32 NNNNNNNNNN ............................. GGACAAAAAAACCGACACCTCGATCACGGATC 1645771 29 100.0 32 NNNNNNNNNN ............................. CCGTCGTTCCGGGTCCGTCACGACACCTCCGA 1645832 29 100.0 32 NNNNNNNNNN ............................. GCGCCCAGTTCGTCGTCGACTGTGTTGACCAC 1645893 29 100.0 32 NNNNNNNNNN ............................. CTTCATGCCCGCATTTCGAACACCTGGTCATA 1645954 29 100.0 32 NNNNNNNNNN ............................. GTGGTTGGGAGTATGTACGCTCCGCCAGAGAT 1646015 29 100.0 32 NNNNNNNNNN ............................. CCAGTTGTACGCATCGGCTGTGATGTAGTTGT 1646076 29 100.0 32 NNNNNNNNNN ............................. TCGTCGATATCATCGTCGCGCATTCTGTCTAC 1646137 29 100.0 32 NNNNNNNNNN ............................. CAGTCCGTTGTGATATATCCTCTCAGATCCAA 1646198 29 100.0 32 NNNNNNNNNN ............................. TCCGGTTCCGACCATCCTGAGACCGGAGGGTT 1646259 29 100.0 32 NNNNNNNNNN ............................. AAAAGCACAACAAGCCAAAAGAACAGGTTATC 1646320 29 100.0 32 NNNNNNNNNN ............................. TACTAGCATCCTCGAAAAATTCCGCAGCGATT 1646381 29 100.0 32 NNNNNNNNNN ............................. GCCAGAAACAACCGTTTCGTTTACAGTAGATC 1646442 29 100.0 32 NNNNNNNNNN ............................. TTTCACGCAACATAGATATACTATTAAAACTA 1646503 29 100.0 33 NNNNNNNNNN ............................. TTTATCATCTAAAATTTCTGCTTCAAGAGGAAT 1646565 29 100.0 32 NNNNNNNNNN ............................. ATACAGAACCAGAAGAAACTGGTCGATGGGAA 1646626 29 100.0 32 NNNNNNNNNN ............................. GATAGATGAAGCAATTGAAACTACAATCTCAT 1646687 29 100.0 32 NNNNNNNNNN A............................ TCTAATGGTGGGGTTGATTAATTTATATGTTC 1646748 29 100.0 32 NNNNNNNNNN ............................. ATCAATATCAACGCTGTCTAATAGTTCGGCAA 1646809 29 100.0 32 NNNNNNNNNN ............................. ATATTAATGATCCAAAATTTAATAGTGTTTAT 1646870 29 100.0 32 NNNNNNNNNN ............................. TCACTAAGGAAATTAATTACATATTTGTTTTC 1646931 29 100.0 32 NNNNNNNNNN ............................. GTCAATATCAACGCTGTCTAATAGTTCGACAA 1646992 29 100.0 32 NNNNNNNNNN ............................. ATCATATTATGGTAGAGAATATATTATAGATC 1647053 29 100.0 33 NNNNNNNNNN ............................. TAAATCCCCATTGTTCAAGTTCATCTTCCCAAT 1647115 29 100.0 32 NNNNNNNNNN ............................. TTTTTTGGATATTGAAGTCGATGATGCAGAAT 1647176 29 100.0 32 NNNNNNNNNN ............................. ATTATAAGATTTTGTATTGGGAATAAAAATTT 1647237 29 100.0 32 NNNNNNNNNN ............................. ATGATCGGCGTCGAAATCGGAATGGCGCGCTG 1647298 29 100.0 33 NNNNNNNNNN ............................. CTCTATTCGCGCAAAAACCATCTTCCCCGGGTG 1647360 29 100.0 32 NNNNNNNNNN ............................. TCCAGTGTCATTCAGGATAAATGACCTAATGT 1647421 29 100.0 32 NNNNNNNNNN ............................. TACTCATCCCTCAGATCCCTGATTAGTCTCCC 1647482 29 100.0 32 NNNNNNNNNN ............................. AATATCTGAAATGTATAAATCTGGTATCCATT 1647543 29 100.0 32 NNNNNNNNNN ............................. GTTAGGTTGTTCTGTAGTTTTTCTACAAGATC 1647604 29 100.0 32 NNNNNNNNNN ............................. TATATTATGAAGGGTCGGTGATGTATTGTGAT 1647665 29 100.0 32 NNNNNNNNNN ............................. TCCGAACTCGCCGGCGGGGACATCGTAGAAAA 1647726 29 100.0 32 NNNNNNNNNN ............................. ATTGGAGCCCATTCCCCACACCAATGAGTCTC 1647787 29 100.0 32 NNNNNNNNNN ............................. TCGGTGAACCGGAGATCGGAAAAATCCGCATT 1647848 29 100.0 32 NNNNNNNNNN ............................. CTAACGCGGTTGCATCCCCCGAGATGCATCTC 1647909 29 100.0 32 NNNNNNNNNN ............................. GTTCTCCGCAGAGGAGATGGATCGATTAAGAG 1647970 29 100.0 32 NNNNNNNNNN ............................. CAGACTGCGCCACCCGTCGGGCAGGACTGGAC 1648031 29 100.0 32 NNNNNNNNNN ............................. CGCCGAGCCTACAACAACCCTCGATCGCCGCT 1648092 29 100.0 32 NNNNNNNNNN ............................. GTTATCTGCAATGAATCGGAACAGATCGACAC 1648153 29 100.0 32 NNNNNNNNNN A............................ TTGATCCCGCTTCTCCAGAGCAGCCAGGTCCT 1648214 29 100.0 32 NNNNNNNNNN ............................. ATCTTTCGCTTGGCCTTGATCTCCTTATCACC 1648275 29 100.0 32 NNNNNNNNNN T............................ GGGCCCGGGTAAAACACGATGTTGAGTTTAAT 1648336 29 100.0 32 NNNNNNNNNN ............................. AGTCTCCGATTATCAGGTTCAGGTCCCTGTGA 1648397 29 100.0 32 NNNNNNNNNN ............................. GTTAAAACTGCATTTTGGTACAATAATGATGC 1648458 29 100.0 32 NNNNNNNNNN ............................. CTTTGGTGTTGAGAGGATCACTGTGGGTCCTA 1648519 29 100.0 32 NNNNNNNNNN ............................. GACAGTTAACCTCCGCAGAACTAACTCGGATC 1648580 29 100.0 32 NNNNNNNNNN ............................. GAGTTCTTTGTTCTCATCCCAAACCAGCAGTT 1648641 29 100.0 32 NNNNNNNNNN ............................. CCTTTCAGTTGGGAACAGTTCAACGTCTACTC 1648702 29 100.0 32 NNNNNNNNNN ............................. AGCAAAGGGTTCCCCATTCACGGAGGCAGCAC 1648763 29 100.0 32 NNNNNNNNNN ............................. ACTTGCTGCTTTACTCCCGGCCCGGTCGAAGA 1648824 29 100.0 32 NNNNNNNNNN ............................. CAGGTATCGGACTGTGTTGCACATTCGAGGGC 1648885 29 100.0 32 NNNNNNNNNN ............................. GTGTAGATCTCGATCTTCGCGTCGGCGGATTC 1648946 29 100.0 32 NNNNNNNNNN ............................. CGTGTAAATCGCGCCAACTGCTGCGAGTATCG 1649007 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 102 29 32 CGGTTCATCCCCACGCTTGTGGGGAACTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [272,32] Score: 0.18/0.18 # # Final direction: R [0.18,0.78 Confidence: MEDIUM] >NC_011835 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 642758 36 100.0 35 NNNNNNNNNN T.....................A.A........... GCCTCCTGATGGATCTCCACGACGTTGCTGGCCCT 642829 36 100.0 35 NNNNNNNNNN T................................... GCCATCCCGACTGTGGCGGCGGCGTTCGGTGTCGC 642900 36 100.0 36 NNNNNNNNNN .................................... GACAGTGCGAACACAGTGCAGTCGGTGACGATCGCG 642972 36 100.0 36 NNNNNNNNNN .................................... TCGGTCTTCTTGAGCTGGTCGGTGAGTGTCTTGAGC 643044 36 100.0 36 NNNNNNNNNN .................................... GCAACGCCTTCGTTCGCCTCGTGGACTATCGCGGCC 643116 36 100.0 39 NNNNNNNNNN .................................... CAGGTTCTCGAGGATGCTCACTATTTCCGTGAGGATGAT 643191 36 100.0 38 NNNNNNNNNN .................................... CTATACCCGTATGCAATGCTGTGCGCGTTGGATGCAAG 643265 36 100.0 36 NNNNNNNNNN .................................... TGGCGCGAGCAGTATCACCACGTGGCTGCTCAACCG 643337 36 100.0 36 NNNNNNNNNN .................................... AACGGTTCGATGGTTCGCACAGTGAGTTGTTCACTC 643409 36 100.0 35 NNNNNNNNNN .................................... TTCGTCTCCTCCCTGCGCCGCTGATTGACCTGTTT 643480 36 100.0 34 NNNNNNNNNN .................................... ATTTCAGGCGGCATCAGACCTTGCGGCTGGGATT 643550 36 100.0 38 NNNNNNNNNN .................................... GCGTGTGGTGGAAAAACCAGCCCGTCACCGAAGCGGCC 643624 36 100.0 34 NNNNNNNNNN .................................... TCGCAGGTGAATATCGGTGGCGGCGGCTTGTCGT 643694 36 100.0 34 NNNNNNNNNN .................................... CGGATAGTATCCTGCGTCGCGTCTCCAATGGCGA 643764 36 100.0 38 NNNNNNNNNN .................................... CTGACAGCATCCTCTCATTCCTCTCGAACGGCGAATAC 643838 36 100.0 34 NNNNNNNNNN .................................... TGTTCGCTTTGATGCGTGTGATTGAGTTCGGCTT 643908 36 100.0 39 NNNNNNNNNN .................................... TTCGGCGCGTGTTCCTCCGCCGTTGCCGTTGTGGTGGGC 643983 36 100.0 35 NNNNNNNNNN .................................... GAGGTCATGGTGAAGTCGCGTTCGGTGCCGGTCTT 644054 36 100.0 37 NNNNNNNNNN .................................... CCGCCTCCCACTCCGCCACGCTGAGCGCCATATCGTC 644127 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 20 36 36 CCCTCAATGAAGCTCCGAAGCCGAGACTTCGGAGAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [10,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.30,-7.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [65.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [54,181] Score: 0.18/0.18 # # Final direction: R [0.64,0.96 Confidence: LOW] >NC_011837 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2298729 30 100.0 33 TTAAAAATGG .............................. CAACCACCTTCTTAACCTTATAAAATTGTGTTC 2298792 30 100.0 36 AATTGTGTTC .............................. TTATACTGCCTGAAAAGCCAAATATCCATAAGCATT 2298858 30 96.7 35 CATAAGCATT .......................A...... AATTACCAATATTTTTACCTAAAGTTTTTAATCTT 2298923 30 100.0 36 TTTTAATCTT .............................. TTTTTAGTAAGAGGACTTAACCATTTTGGCAGCTCT 2298989 30 100.0 37 TGGCAGCTCT .............................. ACACTATATTTTTGAATATCACCTTGTAGTATTTTAG 2299056 30 100.0 35 AGTATTTTAG .............................. TTGTATCCCCATCAATTCCTCTATTCTTTATAGAT 2299121 30 100.0 36 CTTTATAGAT .............................. CAGCAAAGATTATGGAATTATAAGGAGGAAATTTAA 2299187 30 100.0 36 GGAAATTTAA .............................. TTTCCTATATTAATCAACATTTTATTTTCTCATGTT 2299253 30 100.0 34 TTCTCATGTT .............................. CTTGTGGTATTAAAACAATCCTGTCTGGTACTCC 2299317 30 100.0 36 CTGGTACTCC .............................. CTAGGATATGCATTTTTATTCTTTTTAATAATTCTT 2299383 30 100.0 AATAATTCTT .............................. CAATGTAAAT ========== ====== ====== ====== ========== ============================== 11 30 35 ATTTAAATACAATCCTTGTTAAGGTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:73.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.60,-1.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [56,209] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_011837 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2754516 30 96.7 35 TTGCAATGCA ......................G....... TATATGCTATAGACGCAAATTCCCTTATACCTTTC 2754581 30 96.7 36 TATACCTTTC ......................G....... TATAAAAGAATACATAAAACAAAAGAAGATAGTTGT 2754647 30 96.7 36 AGATAGTTGT ......................G....... TAATGTACTGGTAATAGATAACAAACAAGCTGTAGA 2754713 30 100.0 35 AAGCTGTAGA .............................. GGATAAATAGATGAATCAATATGCATTACTTATTT 2754778 30 100.0 36 TTACTTATTT .............................. CCTTTACGAATAACAATATAATTTCCTCTATCTAAA 2754844 30 100.0 36 TCTATCTAAA .............................. GGATAGCTGCGGCGCTAGGGCCATTACTTTTAATTT 2754910 30 100.0 36 CTTTTAATTT .............................. CTTATAAATCACTTTGTATCACCAACACTCCTTTCT 2754976 30 100.0 36 ACTCCTTTCT .............................. TATTTTCATCTAATTCAAATTCATCTGGATAAATCA 2755042 30 100.0 35 GGATAAATCA .............................. TATTGCAGAGGGAATTATGTATATAGCATACCTTT 2755107 30 100.0 36 GCATACCTTT .............................. TTTCCGAGGAAGACCAATGTCCCCTTCGGTATTTTG 2755173 30 100.0 36 CGGTATTTTG .............................. ATATTTACACAGTTCTACTTCTATATTGTTAAGATT 2755239 30 100.0 TGTTAAGATT .............................. CATCAGCACCT ========== ====== ====== ====== ========== ============================== 12 30 35 ATTTAAATACAATCCTTGTTAAAGTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [65.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [874,111] Score: 0.18/0.18 # # Final direction: F [0.45,0 Confidence: MEDIUM] >NC_011837 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2756697 30 100.0 34 CCGTTACTGT .............................. TTGTACATAGTTACTAGGGTTGCCCCGTTTATGG 2756761 30 100.0 36 CCGTTTATGG .............................. GCATCTGCAAACTCTCCTAAAACTGCGGTTGTGTCC 2756827 30 100.0 35 GGTTGTGTCC .............................. CTCGCAAAGTTCTTTTCAAACATCTCAAGAGCCTG 2756892 30 100.0 36 CAAGAGCCTG .............................. TCTGAATTAACTACAAATATAACGTTGTCTCTTATG 2756958 30 100.0 34 GTCTCTTATG .............................. CCAAGGATTTAATAGAAGAAATACATAATTTAGA 2757022 30 100.0 37 ATAATTTAGA .............................. AGTAGTTGCTGTAAGAGGTGCCATATCAATATTAGGT 2757089 30 100.0 AATATTAGGT .............................. TAATGTAAAA ========== ====== ====== ====== ========== ============================== 7 30 35 ATTTAAATACAATCCTTGTTAAAGTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [66.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [65,180] Score: 0.18/0.18 # # Final direction: R [0,0.45 Confidence: MEDIUM] >NC_011837 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2766591 30 100.0 27 NNNNNNNNNN TA.ATTT.....CA.........G...... ATAAATTTAAACATTTACCATTAAAAT 2766648 30 100.0 36 NNNNNNNNNN .......................G...... TCATATTGAATCATATCATCAGTTTTTTCTATGGCA 2766714 30 100.0 36 NNNNNNNNNN .......................G...... GTATCCAAAGCTTCTGGAGCTGCATCTATTACCATT 2766780 30 100.0 36 NNNNNNNNNN .......................G...... TATTAAGAGATGCCTTGAGTTATGGAGCAATCCTAA 2766846 30 100.0 37 NNNNNNNNNN .......................G...... CTAAGTCAATATAGTTTTGTATTTCAGGTATCAGCTT 2766913 30 100.0 36 NNNNNNNNNN .......................G...... CTGACCTGTAATTGCAAGTGCAGCAGCCAGCCATTG 2766979 30 100.0 35 NNNNNNNNNN .......................G...... CCTGTACAAAATGTGCTTTTGGTTGTAAACCCATC 2767044 30 100.0 36 NNNNNNNNNN .......................G...... ATTTAGGATCAATATTAAATATCTCCTTTCTGGAGT 2767110 30 100.0 36 NNNNNNNNNN .......................G...... CTCGATCTTTTCAATGTCTGTTACTGCTATTTTGTC 2767176 30 100.0 36 NNNNNNNNNN .......................G...... TCCTGTGTTCTTCTATTTTACTTTCGTTATAGGCCT 2767242 30 100.0 36 NNNNNNNNNN .......................G...... TACTGTATTTCAAATTATCACAGGATATTCTAACAA 2767308 30 100.0 37 NNNNNNNNNN .......................G...... TTAGTCATTTCAGTTGGATAGTGTTCAGCATAACTTG 2767375 30 100.0 35 NNNNNNNNNN .............................. TATAACATTTTTAGTGCTTCATATCTTCTTTCCCC 2767440 30 100.0 36 NNNNNNNNNN .............................. TATGGAATTTAGCAAAGGCAGAAGAATCAATACTTT 2767506 30 100.0 34 NNNNNNNNNN .............................. CTATGTTTTTTATCTTTGTGTTTAATTCCTCTAC 2767570 30 100.0 37 NNNNNNNNNN .............................. CTGAAGCAAAAGAAAATACTAACACACCAGAAAGTAA 2767637 30 100.0 34 NNNNNNNNNN .............................. CCTAGTTGGGTTATTAATGCCTCCTTTTTCTTTT 2767701 30 100.0 37 NNNNNNNNNN .............................. GCTTATAGTCAAGGAAAATCCGTACTTAGAAAAGAGG 2767768 30 100.0 37 NNNNNNNNNN .............................. CCAGTACCGCCTGTATTAAATGCTATTTTACCTTCTG 2767835 30 100.0 37 NNNNNNNNNN .............................. GATTTAATCCATTGTTTTAGTGTCAATTCATCTTTAG 2767902 30 100.0 36 NNNNNNNNNN .............................. ATTTCCAGAGTGGAAAACAGCAGACATAATTATACC 2767968 30 100.0 36 NNNNNNNNNN .............................. CTTCCTCACCTATAATAGTTACTATGGGGTCTATGC 2768034 30 100.0 36 NNNNNNNNNN .............................. GTACAAAAACTTCCTTCTCGCAGAGGTCACCCTCTA 2768100 30 100.0 35 NNNNNNNNNN .............................. TAAATAGTAAAAATTATAAAAATTGAATACGTTCA 2768165 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 25 30 35 ATTTAAATACAATTCTTGTTAAGATTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:80.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [441,200] Score: 0.18/0.18 # # Final direction: R [0.18,0.41 Confidence: MEDIUM] >NC_011837 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 3510143 30 83.3 36 TTTGTATAAC ....T......GCC...A............ AGATGTTAAATTCGAATATGAAACTTTTGTAGAAGA 3510209 30 96.7 35 TTGTAGAAGA .................A............ GCAAAACTAAGAAGGTACAGTATGGAAAATGAAAT 3510274 30 100.0 36 AAAATGAAAT .............................. TGCTACCAAAGATGAAATATCTAATGCTGGTTATGG 3510340 30 100.0 37 CTGGTTATGG .............................. GGATGTTGACATAAAAAACCTTCAAACTTCTACAGGG 3510407 30 100.0 38 TTCTACAGGG .............................. TGGAGACTTGATGTGTTCAATTCTCATGGAAAGATATA 3510475 30 100.0 36 GAAAGATATA .............................. TAGACTTATTTATACCTAAAGACATTGCTAAATCAC 3510541 30 100.0 35 GCTAAATCAC .............................. AGAAATTGGCTTAATACTATAGATTATAAAGTATA 3510606 30 100.0 38 ATAAAGTATA .............................. AAGAATACTGATACTTCTGCTAATCAATTTTACATCTA 3510674 30 100.0 36 TTTACATCTA .............................. TAAAAAGCTTTTTTACTTTACCAATAACTTTAGGTA 3510740 30 96.7 35 ACTTTAGGTA .......................T...... ATAGATGATTTTATTAATTCTCAAGGTTTTATTTA 3510805 30 96.7 36 GTTTTATTTA .......................T...... AATGCAACAACATCTGTAATGGTCTTTCTTTGCCAT 3510871 30 96.7 36 TCTTTGCCAT .......................T...... GGTAATTCAGTTTCTACAACTCCACATTCTTTTATA 3510937 30 96.7 35 TTCTTTTATA .......................T...... TTAAAGTTAAGCACAAGAGAACTTGCAAAAAAAGC 3511002 30 96.7 35 CAAAAAAAGC .......................T...... GTGCATCAAACTTATTATCAGGTATCCATAGGTCA 3511067 30 96.7 36 CCATAGGTCA .......................T...... ATGGCTTTCCATGGGACTCCAAACAGTTTTGCTGTT 3511133 30 96.7 36 TTTTGCTGTT .......................T...... AAGCCTACAAGAAAAGAAAGACGATACCCCACAAGA 3511199 30 96.7 34 CCCCACAAGA .......................T...... TTTGGAAATTATATAATTTAGGGAGGAAATTAAA 3511263 30 96.7 36 GGAAATTAAA .......................T...... ATGAAAATGCTCATAAGATTAGTTGTACCAACAGTT 3511329 30 96.7 ACCAACAGTT .......................T...... TAATGTAAAAT ========== ====== ====== ====== ========== ============================== 19 30 35 ATTTAAATACAAATCTTGTTAAGGTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [76.7-78.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [521,967] Score: 0/0.18 # # Final direction: R [0,0.41 Confidence: MEDIUM] >NC_011880 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 48240 36 100.0 38 NNNNNNNNNN .................................... AACTCTTCCGTCGCGCCACTGGGTTGGGTGAGTGGAAG 48314 36 100.0 34 NNNNNNNNNN .................................... CTAGTTTATAGAGTTGTTCATCTGCCAGTTGAAA 48384 36 100.0 36 NNNNNNNNNN .................................... GCTTCGACTCGGCAGCAGGGCATTACCGACCACTGA 48456 36 100.0 35 NNNNNNNNNN .................................... CTGTTCATGCTCCTTGCGGAAGGAGGCAGTCAGCT 48527 36 100.0 37 NNNNNNNNNN .................................... TCGTGTTGGACAGTATCGTAATAACGAGTTTATTAAT 48600 36 100.0 37 NNNNNNNNNN .................................... GATTGCGGGCCAGTCGCTTGACCTTGCCAGTTCAAGA 48673 36 100.0 36 NNNNNNNNNN .................................... AAAATCTAGCTAACTGGCAAGGTTTTCTAGATGATT 48745 36 100.0 38 NNNNNNNNNN .................................... TGTATCGTCATTAGTTAGGTATGGGTAAGGGTAAGAAA 48819 36 100.0 36 NNNNNNNNNN .................................... CAAAATTCATTACATCTTCTTACTCTAAAGACTTAG 48891 36 100.0 39 NNNNNNNNNN .................................... AAGAGGGGATACCGGAGACTAACAGTGCAGGGCCAGGAT 48966 36 100.0 38 NNNNNNNNNN .................................... GGTAAGACTGAGGACGGCAGCGACCTGCTGTTTGACAG 49040 36 100.0 37 NNNNNNNNNN .................................... AGGAGTTAGCAGGAGATTAGACTACGGGACTAGCAAC 49113 36 100.0 36 NNNNNNNNNN .................................... TTGGCAGGGTTACACCGCAGACAGCGCAGACTTTCC 49185 36 100.0 40 NNNNNNNNNN .................................... TATCAGCAGCGAGGCACTGGCCCTTCTACTGACTCAACGA 49261 36 100.0 36 NNNNNNNNNN .................................... TATTGCGTACCCAAATGGAACCAATAGCGTGCTTTT 49333 36 100.0 34 NNNNNNNNNN .................................... GATGGGTTTTATGATTCTGGTCACTACTTCTACA 49403 36 100.0 38 NNNNNNNNNN .................................... AACTTCTATTAAATTACTACAAACCGCTATTTACGATA 49477 36 100.0 38 NNNNNNNNNN .................................... GAGCAGAGAAGGTCGATAAGAAGGCGCTGCAGAGATTT 49551 36 100.0 36 NNNNNNNNNN .................................... CAGTCGGTGGGATGGTCCCTCAGGCTAGCGAGACAG 49623 36 100.0 37 NNNNNNNNNN .................................... ATAACAGTTAGGGGGTCGAGAGGCCCCCTTCTCCTTA 49696 36 100.0 38 NNNNNNNNNN .................................... GGTGAATGTGCCTGGCGGCGCGGGGAAGAGTGACATAC 49770 36 100.0 40 NNNNNNNNNN .................................... AAAGTCACGGGCGGTGAAGCGACGCATCAACTTCTCAGCT 49846 36 100.0 37 NNNNNNNNNN .................................... TGGTTCTCAGCAGGTGACTGAGGGATGGAGCAAAGAT 49919 36 100.0 37 NNNNNNNNNN .................................... GATCGGAGCAGAGCTTACGCAATTCCCTGATGTTTAG 49992 36 100.0 36 NNNNNNNNNN .................................... GCAACTAAGACCGCACAGGCAGAGTTAAACCGATTC 50064 36 100.0 39 NNNNNNNNNN .................................... TACCTCAGTCATCGCTCACCCTCTTCTTCAGGTTCCCAG 50139 36 100.0 39 NNNNNNNNNN .................................... CCGCTTTAGGGGAGTCATCCTTAGCTGATCTTGCTTACC 50214 36 100.0 39 NNNNNNNNNN .................................... CTCTGATGTCCGCTTAGAGATCAGCCAGAGATAACTGAC 50289 36 100.0 37 NNNNNNNNNN .................................... ACCAGATAGAAGTTAGCTGTATGTCCTACCTGGTAAG 50362 36 100.0 38 NNNNNNNNNN .................................... CCCCTAACCTAAGCTGGCTAAGGGTTCTAAAATTTTTT 50436 36 100.0 36 NNNNNNNNNN .................................... CCGGGGTTGGTCATACCTGAGTAGTAAGACTCTTAT 50508 36 100.0 37 NNNNNNNNNN .................................... CTACTGTGAGTCAAGCAAATTTGCCTCTCCAGATAAC 50581 36 100.0 36 NNNNNNNNNN .................................... CTTGGGTAATGCGCTGGTTTCGTTCGGCGTTCTCTT 50653 36 100.0 36 NNNNNNNNNN .................................... GAGATAGACAACGTTATCAGGTTTGGACATATTACT 50725 36 100.0 35 NNNNNNNNNN .................................... CATAACCATGCTGCTGGCATCTCCATTGCACCAAT 50796 36 100.0 37 NNNNNNNNNN .................................... CTAAACATCATAAAATTGATGGTGGTTGGGAATATTG 50869 36 100.0 39 NNNNNNNNNN .................................... AGGTATCAATTCTCAAGAAAAGGCTAAAGCTTTAGACCT 50944 36 100.0 38 NNNNNNNNNN .................................... GTTGGATGCGGCGGGACAGCGGCGGTTCTACAACCTTT 51018 36 100.0 39 NNNNNNNNNN .................................... ACCCGCTCACGGAGCTGCTCGGCGCTGAACCCACCCCGG 51093 36 100.0 36 NNNNNNNNNN .................................... ACCGTAGCCTGCGGCTGATCTTCTACGACAGGTTGA 51165 36 100.0 35 NNNNNNNNNN .................................... GTAACTTAGAGTACACAGGCACCAAGTCCCATTGG 51236 36 100.0 38 NNNNNNNNNN .................................... AATGTGGACACGGATTGTCCCTTCCGTGTTAGTGGCAT 51310 36 100.0 40 NNNNNNNNNN .................................... ATCCTCTGCTTGCCACCCACCAGCTTGCGCTAGAAGAGTC 51386 36 100.0 37 NNNNNNNNNN .................................... AGCCAGTAGGTTAGAAACTGTGATATTCCCGGATAGC 51459 36 100.0 37 NNNNNNNNNN .................................... ACCAGGTTGCTGCCTTTTCTGCAATTTCACGCTTCAT 51532 36 100.0 38 NNNNNNNNNN .................................... AAGGCGGCCCCACACTTACCTAGCCGATGCTGTTAATC 51606 36 100.0 38 NNNNNNNNNN .................................... TCCCCATCGCTGGGGCTTAGTCATATCGACCCAGCAAA 51680 36 100.0 37 NNNNNNNNNN .................................... TGTTAACGCTTCCCACTTCTGGGTTGCACTTTTTAAA 51753 36 100.0 37 NNNNNNNNNN .................................... GGGGGATGCGTTCGACTCCCTGGCCTCCCTAGTTACT 51826 36 100.0 34 NNNNNNNNNN .................................... TCATTACCCCGCCCAAGATGCCCAGCCTCAGCCA 51896 36 100.0 39 NNNNNNNNNN .................................... AAAGGAGTTCGTCTATGAGTGAATACTTACCTTGGAAGA 51971 36 100.0 36 NNNNNNNNNN .................................... TGGGCGTAGTGCGCCTCATCTGCAATCAAGATATAT 52043 36 100.0 41 NNNNNNNNNN .................................... CCGCAACTGGGTATTAATCGGGAATCGTCGCCGGTCTTCAG 52120 36 100.0 38 NNNNNNNNNN .................................... TAGATGTAGTAATCACTGGCCTGGAAGAGACCAGGGAA 52194 36 100.0 37 NNNNNNNNNN .................................... GTCTGGTTACCATTGACTTCGACAAGCGCGAGGTTAA 52267 36 100.0 39 NNNNNNNNNN .................................... ACAGGCTCAGTGAGTATGAATTCAGCGAATTGACTCAAC 52342 36 100.0 38 NNNNNNNNNN .................................... TTTAGGTCAACTGGGAATATGCGTCCACTCGCCGATGG 52416 36 100.0 36 NNNNNNNNNN .................................... AGATTTACCTGTACCGCCATCAGCAAAGAAAATGCC 52488 36 100.0 34 NNNNNNNNNN .................................... TGCTGTAGCAGAAACAGCAATCCAGTAAGGTAGG 52558 36 100.0 38 NNNNNNNNNN .................................... GCAGGCTTGAACATGGCGCGCACAGCGAGCTTCATATC 52632 36 100.0 37 NNNNNNNNNN .................................... ATGACTAGGTAGATACGGTACAGCTCCTCTCGTAAAG 52705 36 100.0 36 NNNNNNNNNN .................................... AATCTATGAGAGCGGCTACTTGGGGGGTTACACCAA 52777 36 100.0 37 NNNNNNNNNN .................................... CCAACAGGTTGCTGCAGTACCCCCTATCCAGGCGGAG 52850 36 100.0 36 NNNNNNNNNN .................................... ATGTTGAAGTGGTTAGCTAGGAAGGATAAGTCAGGG 52922 36 100.0 38 NNNNNNNNNN .................................... TGGATGGTGGTATAGACAGACGGCGCCCAGGTGTGCTC 52996 36 100.0 34 NNNNNNNNNN .....................A.T.GA.TG.A..CA TCACACCATCCGGACCGACGATCGTGATGTTGCG 53066 36 100.0 37 NNNNNNNNNN .................................... CAGAGGCGGGGCGATCGGAGAGGGAGCAGCGAGGGCC 53139 36 100.0 35 NNNNNNNNNN .................................... GCCACGAGCACTGAAATTGTGGCTCAGGCGCTTCA 53210 36 100.0 36 NNNNNNNNNN .................................... TTCAATATGGGTTTCCCAGAGTCCACCACCTCGGAG 53282 36 100.0 36 NNNNNNNNNN .................................... ATACTCAATTTCGTTGCCGAAGCCGACAAAATTGCG 53354 36 100.0 37 NNNNNNNNNN .................................... TCCACCAGAAGTGGCCCTTGCTAGCGCTATAAGGCAG 53427 36 100.0 37 NNNNNNNNNN .................................... ACCGACTCATTGCCAACAACAGCAAACAATTCTCCAG 53500 36 100.0 37 NNNNNNNNNN .................................... GACGGCATCACGGTCCTCCTGCCAGGAGTCCAGGATA 53573 36 100.0 37 NNNNNNNNNN .................................... CCGACAGCGGGGATGCAAGTAGCCTCACGGTAGTCAC 53646 36 100.0 37 NNNNNNNNNN .................................... TTCACCTCGTACAGCACGACCTTGCAGACGTTCTGCA 53719 36 100.0 36 NNNNNNNNNN .................................... CGAGGGGGCCTTGAGGGGTTACTCTTCCACTTCGAG 53791 36 100.0 35 NNNNNNNNNN .................................... TACATAAAAGGAGAAATCTCATGGGTCTGTTTAAT 53862 36 100.0 39 NNNNNNNNNN .................................... GCCTTGTCCCACTTCTGGCGTTCCGACTCATTCTCACCG 53937 36 100.0 37 NNNNNNNNNN .................................... CAGGGGAGGGCTAGCCAATTTTGTATCAGTTATTCTC 54010 36 100.0 35 NNNNNNNNNN ...............................A.... ACAAGACGAAAGGTGACACGCTGCTTCCCCTTCGG 54081 36 100.0 36 NNNNNNNNNN .................................... CATACTTGCCGTTAATGGTTTCCCAGAATTCCTTAG 54153 36 100.0 37 NNNNNNNNNN .................................... CGCCAGTAATCGACGAGAGTATTCGCGACCTTGATAA 54226 36 100.0 39 NNNNNNNNNN .................................... TTCACCTTGAATAGCTCCCACTAGTGGGAGGGCGAGGAC 54301 36 100.0 39 NNNNNNNNNN .................................... GTTACAATGAGGGGCGCAACATCGGTAACGCAAAAGTGC 54376 36 100.0 39 NNNNNNNNNN .................................... TCATCTCTATCGTAATTCCTTTACGTATGCAGTACTCAA 54451 36 100.0 38 NNNNNNNNNN .................................... AATGGACTCAGCTTAGAGCGCTTGCTAGCGCTATCTGA 54525 36 100.0 37 NNNNNNNNNN .................................... GATCATATTTCTGTTCGCAGTACCGAACCCAGAAGGA 54598 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 88 36 37 GTCCCTACTTGTTAGGGAAATCAATTGAATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [196,16] Score: 0.18/0.18 # # Final direction: F [0.59,0.27 Confidence: MEDIUM] >NC_011880 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 48673 36 100.0 36 CAGTTCAAGA .................................... AAAATCTAGCTAACTGGCAAGGTTTTCTAGATGATT 48745 36 100.0 38 CTAGATGATT .................................... TGTATCGTCATTAGTTAGGTATGGGTAAGGGTAAGAAA 48819 36 100.0 36 GGGTAAGAAA .................................... CAAAATTCATTACATCTTCTTACTCTAAAGACTTAG 48891 36 100.0 39 AAAGACTTAG .................................... AAGAGGGGATACCGGAGACTAACAGTGCAGGGCCAGGAT 48966 36 100.0 38 GGGCCAGGAT .................................... GGTAAGACTGAGGACGGCAGCGACCTGCTGTTTGACAG 49040 36 100.0 37 TGTTTGACAG .................................... AGGAGTTAGCAGGAGATTAGACTACGGGACTAGCAAC 49113 36 100.0 36 GACTAGCAAC .................................... TTGGCAGGGTTACACCGCAGACAGCGCAGACTTTCC 49185 36 100.0 40 CAGACTTTCC .................................... TATCAGCAGCGAGGCACTGGCCCTTCTACTGACTCAACGA 49261 36 100.0 36 GACTCAACGA .................................... TATTGCGTACCCAAATGGAACCAATAGCGTGCTTTT 49333 36 100.0 34 GCGTGCTTTT .................................... GATGGGTTTTATGATTCTGGTCACTACTTCTACA 49403 36 100.0 38 TACTTCTACA .................................... AACTTCTATTAAATTACTACAAACCGCTATTTACGATA 49477 36 100.0 38 ATTTACGATA .................................... GAGCAGAGAAGGTCGATAAGAAGGCGCTGCAGAGATTT 49551 36 100.0 36 GCAGAGATTT .................................... CAGTCGGTGGGATGGTCCCTCAGGCTAGCGAGACAG 49623 36 100.0 37 AGCGAGACAG .................................... ATAACAGTTAGGGGGTCGAGAGGCCCCCTTCTCCTTA 49696 36 100.0 38 CTTCTCCTTA .................................... GGTGAATGTGCCTGGCGGCGCGGGGAAGAGTGACATAC 49770 36 100.0 40 AGTGACATAC .................................... AAAGTCACGGGCGGTGAAGCGACGCATCAACTTCTCAGCT 49846 36 100.0 37 CTTCTCAGCT .................................... TGGTTCTCAGCAGGTGACTGAGGGATGGAGCAAAGAT 49919 36 100.0 37 GAGCAAAGAT .................................... GATCGGAGCAGAGCTTACGCAATTCCCTGATGTTTAG 49992 36 100.0 36 TGATGTTTAG .................................... GCAACTAAGACCGCACAGGCAGAGTTAAACCGATTC 50064 36 100.0 39 AAACCGATTC .................................... TACCTCAGTCATCGCTCACCCTCTTCTTCAGGTTCCCAG 50139 36 100.0 39 AGGTTCCCAG .................................... CCGCTTTAGGGGAGTCATCCTTAGCTGATCTTGCTTACC 50214 36 100.0 39 CTTGCTTACC .................................... CTCTGATGTCCGCTTAGAGATCAGCCAGAGATAACTGAC 50289 36 100.0 37 GATAACTGAC .................................... ACCAGATAGAAGTTAGCTGTATGTCCTACCTGGTAAG 50362 36 100.0 38 ACCTGGTAAG .................................... CCCCTAACCTAAGCTGGCTAAGGGTTCTAAAATTTTTT 50436 36 100.0 36 AAAATTTTTT .................................... CCGGGGTTGGTCATACCTGAGTAGTAAGACTCTTAT 50508 36 100.0 37 AGACTCTTAT .................................... CTACTGTGAGTCAAGCAAATTTGCCTCTCCAGATAAC 50581 36 100.0 36 TCCAGATAAC .................................... CTTGGGTAATGCGCTGGTTTCGTTCGGCGTTCTCTT 50653 36 100.0 36 GCGTTCTCTT .................................... GAGATAGACAACGTTATCAGGTTTGGACATATTACT 50725 36 100.0 35 ACATATTACT .................................... CATAACCATGCTGCTGGCATCTCCATTGCACCAAT 50796 36 100.0 37 TTGCACCAAT .................................... CTAAACATCATAAAATTGATGGTGGTTGGGAATATTG 50869 36 100.0 39 GGGAATATTG .................................... AGGTATCAATTCTCAAGAAAAGGCTAAAGCTTTAGACCT 50944 36 100.0 38 CTTTAGACCT .................................... GTTGGATGCGGCGGGACAGCGGCGGTTCTACAACCTTT 51018 36 100.0 39 TACAACCTTT .................................... ACCCGCTCACGGAGCTGCTCGGCGCTGAACCCACCCCGG 51093 36 100.0 36 CCCACCCCGG .................................... ACCGTAGCCTGCGGCTGATCTTCTACGACAGGTTGA 51165 36 100.0 35 GACAGGTTGA .................................... GTAACTTAGAGTACACAGGCACCAAGTCCCATTGG 51236 36 100.0 38 GTCCCATTGG .................................... AATGTGGACACGGATTGTCCCTTCCGTGTTAGTGGCAT 51310 36 100.0 40 TTAGTGGCAT .................................... ATCCTCTGCTTGCCACCCACCAGCTTGCGCTAGAAGAGTC 51386 36 100.0 37 TAGAAGAGTC .................................... AGCCAGTAGGTTAGAAACTGTGATATTCCCGGATAGC 51459 36 100.0 37 CCCGGATAGC .................................... ACCAGGTTGCTGCCTTTTCTGCAATTTCACGCTTCAT 51532 36 100.0 38 CACGCTTCAT .................................... AAGGCGGCCCCACACTTACCTAGCCGATGCTGTTAATC 51606 36 100.0 38 GCTGTTAATC .................................... TCCCCATCGCTGGGGCTTAGTCATATCGACCCAGCAAA 51680 36 100.0 37 ACCCAGCAAA .................................... TGTTAACGCTTCCCACTTCTGGGTTGCACTTTTTAAA 51753 36 100.0 37 ACTTTTTAAA .................................... GGGGGATGCGTTCGACTCCCTGGCCTCCCTAGTTACT 51826 36 100.0 34 CCTAGTTACT .................................... TCATTACCCCGCCCAAGATGCCCAGCCTCAGCCA 51896 36 100.0 39 GCCTCAGCCA .................................... AAAGGAGTTCGTCTATGAGTGAATACTTACCTTGGAAGA 51971 36 100.0 36 CCTTGGAAGA .................................... TGGGCGTAGTGCGCCTCATCTGCAATCAAGATATAT 52043 36 100.0 41 CAAGATATAT .................................... CCGCAACTGGGTATTAATCGGGAATCGTCGCCGGTCTTCAG 52120 36 100.0 38 CGGTCTTCAG .................................... TAGATGTAGTAATCACTGGCCTGGAAGAGACCAGGGAA 52194 36 100.0 37 GACCAGGGAA .................................... GTCTGGTTACCATTGACTTCGACAAGCGCGAGGTTAA 52267 36 100.0 39 GCGAGGTTAA .................................... ACAGGCTCAGTGAGTATGAATTCAGCGAATTGACTCAAC 52342 36 100.0 38 TTGACTCAAC .................................... TTTAGGTCAACTGGGAATATGCGTCCACTCGCCGATGG 52416 36 100.0 36 TCGCCGATGG .................................... AGATTTACCTGTACCGCCATCAGCAAAGAAAATGCC 52488 36 100.0 34 AGAAAATGCC .................................... TGCTGTAGCAGAAACAGCAATCCAGTAAGGTAGG 52558 36 100.0 38 GTAAGGTAGG .................................... GCAGGCTTGAACATGGCGCGCACAGCGAGCTTCATATC 52632 36 100.0 37 GCTTCATATC .................................... ATGACTAGGTAGATACGGTACAGCTCCTCTCGTAAAG 52705 36 100.0 36 TCTCGTAAAG .................................... AATCTATGAGAGCGGCTACTTGGGGGGTTACACCAA 52777 36 100.0 37 GTTACACCAA .................................... CCAACAGGTTGCTGCAGTACCCCCTATCCAGGCGGAG 52850 36 100.0 36 CCAGGCGGAG .................................... ATGTTGAAGTGGTTAGCTAGGAAGGATAAGTCAGGG 52922 36 100.0 38 TAAGTCAGGG .................................... TGGATGGTGGTATAGACAGACGGCGCCCAGGTGTGCTC 52996 36 97.2 35 AGGTGTGCTC .....................-.............. ATCACACCATCCGGACCGACGATCGTGATGTTGCG 53067 36 100.0 37 TGATGTTGCG .................................... CAGAGGCGGGGCGATCGGAGAGGGAGCAGCGAGGGCC 53140 36 100.0 35 AGCGAGGGCC .................................... GCCACGAGCACTGAAATTGTGGCTCAGGCGCTTCA 53211 36 100.0 36 AGGCGCTTCA .................................... TTCAATATGGGTTTCCCAGAGTCCACCACCTCGGAG 53283 36 100.0 36 CACCTCGGAG .................................... ATACTCAATTTCGTTGCCGAAGCCGACAAAATTGCG 53355 36 100.0 37 CAAAATTGCG .................................... TCCACCAGAAGTGGCCCTTGCTAGCGCTATAAGGCAG 53428 36 100.0 37 TATAAGGCAG .................................... ACCGACTCATTGCCAACAACAGCAAACAATTCTCCAG 53501 36 100.0 37 AATTCTCCAG .................................... GACGGCATCACGGTCCTCCTGCCAGGAGTCCAGGATA 53574 36 100.0 37 GTCCAGGATA .................................... CCGACAGCGGGGATGCAAGTAGCCTCACGGTAGTCAC 53647 36 100.0 37 CGGTAGTCAC .................................... TTCACCTCGTACAGCACGACCTTGCAGACGTTCTGCA 53720 36 100.0 36 ACGTTCTGCA .................................... CGAGGGGGCCTTGAGGGGTTACTCTTCCACTTCGAG 53792 36 100.0 35 CCACTTCGAG .................................... TACATAAAAGGAGAAATCTCATGGGTCTGTTTAAT 53863 36 100.0 39 TCTGTTTAAT .................................... GCCTTGTCCCACTTCTGGCGTTCCGACTCATTCTCACCG 53938 36 100.0 37 ATTCTCACCG .................................... CAGGGGAGGGCTAGCCAATTTTGTATCAGTTATTCTC 54011 36 97.2 35 AGTTATTCTC ...............................A.... ACAAGACGAAAGGTGACACGCTGCTTCCCCTTCGG 54082 36 100.0 36 TCCCCTTCGG .................................... CATACTTGCCGTTAATGGTTTCCCAGAATTCCTTAG 54154 36 100.0 37 AATTCCTTAG .................................... CGCCAGTAATCGACGAGAGTATTCGCGACCTTGATAA 54227 36 100.0 39 ACCTTGATAA .................................... TTCACCTTGAATAGCTCCCACTAGTGGGAGGGCGAGGAC 54302 36 100.0 39 GGGCGAGGAC .................................... GTTACAATGAGGGGCGCAACATCGGTAACGCAAAAGTGC 54377 36 100.0 39 GCAAAAGTGC .................................... TCATCTCTATCGTAATTCCTTTACGTATGCAGTACTCAA 54452 36 100.0 38 CAGTACTCAA .................................... AATGGACTCAGCTTAGAGCGCTTGCTAGCGCTATCTGA 54526 36 100.0 37 CGCTATCTGA .................................... GATCATATTTCTGTTCGCAGTACCGAACCCAGAAGGA 54599 36 100.0 CCCAGAAGGA .................................... CATCAAAAT ========== ====== ====== ====== ========== ==================================== 82 36 37 GTCCCTACTTGTTAGGGAAATCAATTGAATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [51.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [629,15] Score: 0.18/0.18 # # Final direction: F [0.59,0.27 Confidence: MEDIUM] >NC_011880 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 96806 30 90.0 44 TATGTATCCT .....CC........T.............. TACTTTGATGTTCTTGATTGCCCCACATTTTTTTGTGAAGTATC 96880 30 100.0 44 GTGAAGTATC .............................. TGTGTCAACCTCAAATGTTCCCCAACCAATACCGTAGCTTTCCC 96954 30 90.0 42 TAGCTTTCCC ......A....G.C................ CTGGTGAACCAGACCATCATAGTCGTGAGGGAGTTTGGTCTC 97026 30 100.0 43 GTTTGGTCTC .............................. CTAAAGATGCCAGCAGCTATCGCCCCGGAACACATAAAGTCCC 97099 30 93.3 46 ATAAAGTCCC ...........G...........G...... CTGGCCTGTGCGGGGAACATAACGGCTGATGGAGTAGACTAGTCCC 97175 30 96.7 GACTAGTCCC ...........G.................. CGCCTCCTAA ========== ====== ====== ====== ========== ============================== 6 30 43 TACTTGTTAGGAAAACCAATTGAATGGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [60.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [94,81] Score: 0/0.18 # # Final direction: F [0.27,0 Confidence: MEDIUM] >NC_011880 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 98233 36 94.4 36 TTAGGCTCTC ....................C..........A.... TCGGAGGAGTCTTCGTCCCGATCACCGAACATGACA 98305 36 97.2 37 GAACATGACA ....................C............... TACAGGTACCAGCGGTCCATGTTGATCGGGTTCTTCG 98378 36 97.2 37 GGGTTCTTCG ....................C............... AGCCAGAAGTGGGCAAGTGCCTCAATCCGCTTCAGGT 98451 36 94.4 36 CGCTTCAGGT ...T..........................A..... TGGGCGATCGCTTCAATCTGCTCCTCTAGTTCTGCA 98523 36 100.0 39 TAGTTCTGCA .................................... GGTAAAATACTCGCCATGAAAAGAATAGGATATGCCAGG 98598 36 100.0 38 ATATGCCAGG .................................... GTTATGTAGCCATGAGCGATCATGTAGTTTACGCTATA 98672 36 91.7 41 TTACGCTATA ...T................CT.............. ATCGCGGCCTCGTTTTCTGTTCCACGCCGGGCCATCTCCAA 98749 36 100.0 35 CCATCTCCAA .................................... CGGTACTTGCCTTCGCTGGACTCCTCGATGATGTC 98820 36 97.2 41 CGATGATGTC ........................C........... GATCATGGGTCCGCCCAGGCACACATAGAAATGGTCATCGA 98897 36 100.0 36 TGGTCATCGA .................................... GCCTGGAGGATCTGGGCCTGGGATTCCCCATCGTAA 98969 36 97.2 40 CCCATCGTAA ..............................A..... TCTTTTGTCACTTCAAACAGTTTCTCCATCAGTCCTAGCA 99045 36 97.2 AGTCCTAGCA ....................C............... GAGTCCTGCCGATAGCATTGACCCCAGAAGCCATCACCC ========== ====== ====== ====== ========== ==================================== 12 36 37 GTCCCTACTTGTTAGGGAAATCAATTGAATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [41.7-45.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [150,226] Score: 0/0.18 # # Final direction: R [0,0.41 Confidence: MEDIUM] >NC_011883 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1083779 29 100.0 32 NNNNNNNNNN ............................. TGAGCGTTATAAATATAGACTCTGGATGATCA 1083840 29 100.0 32 NNNNNNNNNN ............................. ATTGCGGAGGAGTTCGACGTAACGTGAGCCAT 1083901 29 100.0 32 NNNNNNNNNN ............................. AACCAGTATCACCAACATAACCGGGAGTATAA 1083962 29 100.0 32 NNNNNNNNNN ............................. ATTCAAGTAGCAGCCTATGAGTCCACAGCCTA 1084023 29 100.0 32 NNNNNNNNNN ............................T GGTTCTGCTATTGTTGGTGCTGCTGGCTCTAT 1084084 29 100.0 32 NNNNNNNNNN ............................. GCTAATGAGTTGACGCTGGAAAGTATGCAGCT 1084145 29 100.0 32 NNNNNNNNNN ............................. TGAGCGTTATAAATATAGACTCTGGATGATCA 1084206 29 100.0 32 NNNNNNNNNN ............................. TGAGGACGTTGTAGCATCGCCTTGACCGGGCA 1084267 29 100.0 32 NNNNNNNNNN ............................. GAAGATATCTACACCTCAATGGAACACTTGCC 1084328 29 100.0 32 NNNNNNNNNN ............................. ACCTTGAAAATGTTTTGGCGGTTTCTATGGAT 1084389 29 100.0 33 NNNNNNNNNN ............................. ATTCAAGTAGCAGCCTATGAGTCCACAGCCTAC 1084451 29 100.0 32 NNNNNNNNNN ............................. GGGATGATCTAGTTCAAGAATTCTCGATTATG 1084512 29 100.0 32 NNNNNNNNNN ............................. CCTCTGACGCCCGCCTCCAACGCCCGGAATAT 1084573 29 100.0 32 NNNNNNNNNN ............................. GCTCGGACCCGGTCGGCACTCTTCGCGGACAT 1084634 29 100.0 32 NNNNNNNNNN ............................. TCTCATATCAGATGTAAATAAGGAGTAGCGCC 1084695 29 100.0 33 NNNNNNNNNN ............................. GCCTACGTTTGTTAATTCGACAAGGTAAACACT 1084757 29 100.0 32 NNNNNNNNNN ............................. TGTTGTCTGAAACAACAGAAACGGACTCAGGA 1084818 29 100.0 32 NNNNNNNNNN ............................. AAATCTTACATCATCCGCAGACAATTCCAAAA 1084879 29 100.0 33 NNNNNNNNNN ............................. AAGAAGCGCCGGCCGATGGCGACGACTGGGGCA 1084941 29 100.0 32 NNNNNNNNNN ............................. AAAGACGAGTATCTTCATCATGGGGGACAATG 1085002 29 100.0 32 NNNNNNNNNN ............................. GTTCCAGCAAAAACGCCAGCGGCGTCCGCCTT 1085063 29 100.0 32 NNNNNNNNNN ............................. TGCGCATATTTTTTATCCCGTATTAGAGTAAC 1085124 29 100.0 32 NNNNNNNNNN ............................. GTCTGCATGGCGCGGCGACTGTGCTGCGGTCC 1085185 29 100.0 32 NNNNNNNNNN ............................. ATCATTCGTGGTGGCGCGGGGTGTGTTCGGTA 1085246 29 100.0 32 NNNNNNNNNN ............................. GAGCGGTACTGGCGCTATGAAAATGGGCAGTT 1085307 29 100.0 32 NNNNNNNNNN ............................. CTTAGATTGCCGTGGTTATATGACGATGCGCC 1085368 29 100.0 32 NNNNNNNNNN ............................. GAGGCTAGTATGGAAGGTGATAGCAAAATCGA 1085429 29 100.0 32 NNNNNNNNNN ............................. ACAGTAGGGCCTCAAGATATGCTGTTGCGCCA 1085490 29 100.0 32 NNNNNNNNNN ............................. CACAGCAGACATCGCGTGGAACGTAGATCAGA 1085551 29 100.0 1 NNNNNNNNNN ............................C NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 30 29 32 GTGTTCCCCACGGGCGTGGGGATGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [44,817] Score: 0.18/0.18 # # Final direction: F [0.68,0.55 Confidence: LOW] >NC_011884 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================= ====== 2040733 17 82.4 34 GCCCCGATAA ...G.T...T....... GCCATCTCCGCCCGAGGCTGTGGTACCGCGAAAT 2040784 17 100.0 34 ACCGCGAAAT ................. GCCATCTCCACCAGAAGCAGATCCACCCCGATAA 2040835 17 94.1 31 ACCCCGATAA ...G............. CCCGCCGCCGCCAGACGCTGTGCCGCGAAAT 2040883 17 100.0 GCCGCGAAAT ................. CCCTCCACCTGCA ========== ====== ====== ====== ========== ================= 4 17 33 CCACTCGCACTCCAGGA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [4,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [448,144] Score: 0.18/0.18 # # Final direction: R [0.55,0.68 Confidence: LOW] >NC_011884 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2421822 37 100.0 35 ACCTACGGGG ..................................... TAGCCATTAGCTCTTGCCCAGCAATATGCGTATGT 2421894 37 100.0 35 ATGCGTATGT ..................................... GAACTCGATGACTCCCTGAGCCGTGCCAATTTTGA 2421966 37 100.0 35 CCAATTTTGA ..................................... CAATTCTTAGCCGATCGGATTGAGGAACTGACCGA 2422038 37 100.0 35 AACTGACCGA ..................................... TAGTGAATGGGAATATAAAAGTCTTTCCCAGTTTC 2422110 37 100.0 37 TCCCAGTTTC ..................................... TTCTATCTCGTTGGAACCTGGAATATTTTGAGCTGAG 2422184 37 100.0 36 TTGAGCTGAG ..................................... GCAGGAAAATCTCATGATGGATATTTCTGGTCTAAG 2422257 37 100.0 35 CTGGTCTAAG ..................................... TTTCCACGGTTGACCAGTTGATTGCCCGTCTAAGC 2422329 37 100.0 36 CCGTCTAAGC ..................................... CAAAATCTTATACCGGCGATCTTCCGATTTTACAAA 2422402 37 100.0 36 ATTTTACAAA ..................................... CTCTCGCAGACTTGGGGCTGTGATCGTCCCTGGATA 2422475 37 100.0 36 TCCCTGGATA ..................................... GAATACTCAACAAGCCGCCTTGGAACTACTGCAGAA 2422548 37 100.0 36 TACTGCAGAA ..................................... GTAGCCATCGGACACAGAGCGCAGGGCTGAGAATAG 2422621 37 100.0 35 CTGAGAATAG ..................................... TATGCACTCCACCAGCGGCAACTCTACCAATTTGG 2422693 37 100.0 35 ACCAATTTGG ..................................... GCTTTATGGGTTGGAGCACAGAAAGCGATTTTTAC 2422765 37 100.0 35 CGATTTTTAC ..................................... AAGTCATCAGAATAAGCTTCAAGAGTTGCATGGCA 2422837 37 100.0 37 TTGCATGGCA ..................................... GCTAAGTTGTCGGCTTTCTGTCAGTTGCTTCTGGAGG 2422911 37 100.0 36 CTTCTGGAGG ..................................... TCCTCAATCGAATGCGGGCGGGCGAGATGGATCCAT 2422984 37 100.0 36 ATGGATCCAT ..................................... TTCTTTGCCAGCGAATACGTGTGCAGCAAAGCTTGG 2423057 37 100.0 38 CAAAGCTTGG ..................................... ACAGTAGCTCTAGGGCTGCAGAAATAACCTGATTACGG 2423132 37 100.0 35 CTGATTACGG ..................................... TATCGCTAACTGCCTGCAAATTATTGGCATTAAAG 2423204 37 100.0 37 GGCATTAAAG ..................................... AATCCGTACACCTCTACCCATAGACATAAAACTCTTG 2423278 37 100.0 36 AAAACTCTTG ..................................... TTTCTACTGTCACTCCCCAGGGAATGCAGGCGATCG 2423351 37 100.0 37 CAGGCGATCG ..................................... AGGGGTGAGGCCGCCCTGGTCAGTCCCGACCCCTATC 2423425 37 100.0 37 GACCCCTATC ..................................... GTGCGGAAGTCAGACCGCCCCAGCTCACAGGCCACTT 2423499 37 100.0 37 CAGGCCACTT ..................................... TTTTCCGATCAGCATCATTCCCCCGTTGCGAGAGGAA 2423573 37 100.0 36 GCGAGAGGAA ..................................... ATCTAGCGACTAACCGCACGGGGAGGGACTGCAAAC 2423646 37 100.0 39 GACTGCAAAC ..................................... TTGTAATTGTGGCGACCCCGAACCAATATCATTATCCGG 2423722 37 100.0 37 CATTATCCGG ..................................... AATCACGGGGGGATGGGTGGCAGAGACTGGGGAAGCT 2423796 37 100.0 38 TGGGGAAGCT ..................................... GGGTTTTACAAAGACGTTCCTATCTGCGATTTAACCGG 2423871 37 100.0 40 ATTTAACCGG ..................................... GCGTCAGTGACAGCAGCGTCCCGACCTCTGGCTCCCTCGA 2423948 37 100.0 36 GCTCCCTCGA ..................................... ATTGCCGATAACGACCCCTATCGGCTGGCGGAATAC 2424021 37 100.0 35 GGCGGAATAC ..................................... GCCGCCGGATGATTGGCGTGATAGGAGCAACGATC 2424093 37 100.0 36 AGCAACGATC ..................................... CTTTGCTAAGTTATCGGCAAAGTCAGTATAGTAGGT 2424166 37 100.0 37 TATAGTAGGT ..................................... ATTTTGCTGAGGCGGGACGAAATTGCCGGGATGTTTG 2424240 37 100.0 36 GGGATGTTTG ..................................... TCTGCTCGAAGCCAACAAGCGGGTCGTTTTCGCCAC 2424313 37 100.0 35 TTTTCGCCAC ..................................... ACGATTCCGGGCGATGCCCGGCGCGACGGCGAGGA 2424385 37 100.0 36 ACGGCGAGGA ..................................... CTGAGTAAAGCTGGGAAAGATATGAGCCGTGGAACC 2424458 37 100.0 36 CCGTGGAACC ..................................... CGGGACATAATGGGAGCTTACTGGAATCAACCTGAA 2424531 37 100.0 39 TCAACCTGAA ..................................... CAACTCATGGGGAGAAGAACTCAGGAGTTAGAGGCCCAG 2424607 37 100.0 37 AGAGGCCCAG ..................................... TAGTGGGCTAGATATGCCTCAGAGTACGCATCTAGGC 2424681 37 100.0 39 GCATCTAGGC ..................................... CGGAACGGGGAGAGCCACCGCTAGCTGGATGTCTGCCAG 2424757 37 100.0 35 TGTCTGCCAG ..................................... GGTTTGCCCTATAAGGATACTTACTGGCATAAAAG 2424829 37 100.0 35 GGCATAAAAG ..................................... CTTCAGCAACCACCAGAACACTCGACCCTGCAAGT 2424901 37 100.0 36 CCCTGCAAGT ..................................... TTACTAAACATGGGCTGCGGCAATGGCTTAAAAACC 2424974 37 100.0 35 CTTAAAAACC ..................................... AACAGATAGCGATAGATCCTTTGCTTGTGAGGACT 2425046 37 100.0 37 TGTGAGGACT ..................................... ACTCAAAATGCCGTCAATTGTTGAATTTGTAAACCAG 2425120 37 100.0 37 TGTAAACCAG ..................................... AAGAAAAGCCTAGACGATACCACCAACGCAGTTAAGG 2425194 37 100.0 35 GCAGTTAAGG ..................................... GCCGAAATAATCACCTGATAAGCTGCGTTACACTG 2425266 37 100.0 36 CGTTACACTG ..................................... GAAAAATCCTGATTACGAGCGCTGCCGGCACCTTTC 2425339 37 100.0 34 GGCACCTTTC ..................................... GAAATGGCAATGTTCACCTGTAGTTTGGTGAGTG 2425410 37 100.0 36 TTGGTGAGTG ..................................... ATCACGCGCCTGTTGTTGCCCCCAATTCAGGGCTTT 2425483 37 97.3 TCAGGGCTTT ........A............................ CCGGATACACGCAATTACTATTCAATCTGTATCCCT ========== ====== ====== ====== ========== ===================================== 51 37 36 GTTTCCAAGCCTGAATCCCGGTCTACGGGACTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [9,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.50,-8.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [222,1632] Score: 0.18/0.18 # # Final direction: R [0.78,0.82 Confidence: LOW] >NC_011884 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 4118395 29 100.0 32 NNNNNNNNNN AA.A.........TGTAA........... GGGCAGAGCCTGACCCGGCAGAACCGAGCGTC 4118456 29 100.0 33 NNNNNNNNNN ..............G.............. AACTCCCCAAGAAGAATAAAGGAAGCAATGGAG 4118518 29 100.0 33 NNNNNNNNNN ..............G.............. ACCCTCATAGGCCAGCTCAATCCGGCTTGCCCC 4118580 29 100.0 35 NNNNNNNNNN ....................A........ GTAGCAGCATGATTCTAATCCGTGGCTATGCCTGC 4118644 29 100.0 33 NNNNNNNNNN ............................. TTCAGGAGGCAGCATGAGAACCCTGCACACATC 4118706 29 100.0 33 NNNNNNNNNN .......................A..... CATCACATACTCATCTGTGTACCATCGCTTGCC 4118768 29 100.0 33 NNNNNNNNNN ............................. CAGGAGCCACGTCCAAGCCAGGAAGAGGCAAGC 4118830 29 100.0 33 NNNNNNNNNN T............................ AAAGAAATTCTCCTCTTCGTAGTAGTTCTTGAC 4118892 29 100.0 33 NNNNNNNNNN ............................. TAATCCACTAATTGAAACTCCTTCAAAAAATGA 4118954 29 100.0 33 NNNNNNNNNN ............................. TCTTACCCGACCAACAAGCAGGCGGCAGAGGTA 4119016 29 100.0 33 NNNNNNNNNN ............................. GGAAACCATCGAGATTGAATTCCAAAAGAAAGA 4119078 29 100.0 33 NNNNNNNNNN ............................. CTCAGCATGGACGGGGGGCAATTGTTTTCTAGA 4119140 29 100.0 32 NNNNNNNNNN ............................. TCAGGTAGGCTGATCAGCTTCCACTGTATGAA 4119201 29 100.0 33 NNNNNNNNNN ............................. GCCGTGACTGAAATAGTTGGTGATCACCGTGCG 4119263 29 100.0 35 NNNNNNNNNN .......T..................... GGACGAACAGTCCAAGTACGATCAAATCCCCCTGC 4119327 29 100.0 32 NNNNNNNNNN ............................. GAATATAAAATAAATAGCTTGATCAAGGGTGA 4119388 29 100.0 33 NNNNNNNNNN ............................. GTCACCTATTAAGAACCAATGAGTGCATCAGTC 4119450 29 100.0 33 NNNNNNNNNN ............................. GCAGATGTCCACGCCATACGCCCGATGAAGAAG 4119512 29 100.0 33 NNNNNNNNNN ............................. CAACATTGACGATGCTCACCTCTACTCCAACCA 4119574 29 100.0 34 NNNNNNNNNN ............................. AGCGTCCGCCTGCGAATCCAGGACAGATAAAGAA 4119637 29 100.0 32 NNNNNNNNNN ............................. TTTAATGGCGATGTGCCAAAAATGCCATAACG 4119698 29 100.0 32 NNNNNNNNNN ............................. GCTAACCTGACGGCGGCGTTCTTCCGCAACAT 4119759 29 100.0 32 NNNNNNNNNN ............................. AACAACATCCTCTCCCAAATTCGGCTCTGGAG 4119820 29 100.0 32 NNNNNNNNNN ............................. GAAGTCGGACGACTCATCAGCGAAAGAATGGT 4119881 29 100.0 32 NNNNNNNNNN ............................. GGATCAACCGTTGCCCAGAATGTTGCAGAAAG 4119942 29 100.0 32 NNNNNNNNNN ............................. ATAAGCCCAGGCAATCTCGATTTCTTCGTTCA 4120003 29 100.0 32 NNNNNNNNNN ............................. GTTTGCCCTACGAAAAGGAGGAATTCGAGGAG 4120064 29 100.0 32 NNNNNNNNNN ............................. GGGACGATCGGGGACTTCTTTACAGAAAATGG 4120125 29 100.0 33 NNNNNNNNNN ............................. GGACCTGTCCGCGATCGCAAATGCCGTTTCCGA 4120187 29 100.0 33 NNNNNNNNNN ............................. GATGGATGAGCGACTTTCCACCCAACAATGCTT 4120249 29 100.0 33 NNNNNNNNNN ............................. AACATCAAACACGCTCTCATCGGGAATCCTGTA 4120311 29 100.0 33 NNNNNNNNNN ............................. GGTCGGGTGGTTTTTTTATTGATAATAAATTCA 4120373 29 100.0 32 NNNNNNNNNN ............................. ATTAAGAGCGATCGGGAAGAGATTAAGGCAAT 4120434 29 100.0 32 NNNNNNNNNN ............................. GCCCAGTCGGTAATCATGAATTGCTTGGTGTT 4120495 29 100.0 33 NNNNNNNNNN ............................. TGCTGCCGATAAAATCCAAATCAATGATTGTGT 4120557 29 100.0 33 NNNNNNNNNN ............................. TGGGACAGGGTAAAACTGAAGTTAGCGTTATAG 4120619 29 100.0 33 NNNNNNNNNN ............................. TGCTGCCGATAAAATCCAAATCAATGATTGTGT 4120681 29 100.0 33 NNNNNNNNNN ............................. TGGGACAGGGTAAAACTGAAGTTAGCGTTATAG 4120743 29 100.0 34 NNNNNNNNNN ............................. GTTCAGTCATCGTCCGCTGCCTCACTATCTCTGG 4120806 29 100.0 33 NNNNNNNNNN ............................. TCAACCAAACTTGTAATCATGCTGCTGACCTCC 4120868 29 100.0 33 NNNNNNNNNN ............................. GCCGATCTATAGTGAAGTGCGTACCTACGATGA 4120930 29 100.0 33 NNNNNNNNNN ............................. GGAGGGACTAACCACAAATCTAGAGTACGTAGA 4120992 29 100.0 34 NNNNNNNNNN ............................. GAATTGAAAACAATAAAATCGTCTGCGATCGACC 4121055 29 100.0 33 NNNNNNNNNN ............................. GTGGCCTCTTCCTCGACCTGTTCATGAGGAGCA 4121117 29 100.0 32 NNNNNNNNNN T............................ GCTGCTGCTGCCCTTGCTGAGGTTGCGAGGAA 4121178 29 100.0 34 NNNNNNNNNN ............................. GGCTGTCTGAGCGATTCTCTGAAATCTATCTAAC 4121241 29 100.0 32 NNNNNNNNNN ............................. AGAAGTGGAGTGAAAAAGAATGGCTGACAACG 4121302 29 100.0 32 NNNNNNNNNN ............................. GTTGTTTGTTGCTTTCCAGTAAGCTAAAGGTG 4121363 29 100.0 34 NNNNNNNNNN ............................. GTGATGTGGCTTGCTCGGGAGGACAGATGAACAC 4121426 29 100.0 34 NNNNNNNNNN ............................. TCCTACGGGACATTGCCAATCGGCTATCTGTAAC 4121489 29 100.0 33 NNNNNNNNNN ............................. GTCCCGTTGCCATTTGTTCCACAGCATCCAATA 4121551 29 100.0 32 NNNNNNNNNN ............................. TCCTCGCCGACTGGAATCCCTTCATCTGCCAG 4121612 29 100.0 33 NNNNNNNNNN ............................. GGTCACTGTCAGGGTGGGGGTAACGTATCGCGC 4121674 29 100.0 32 NNNNNNNNNN ............................. ACTGAATTAGCCGATCGCGTCTCTGATGCCTA 4121735 29 100.0 32 NNNNNNNNNN ............................. TCGGTCACCCCGGCCGTGGTCCGCGAAGAAGA 4121796 29 100.0 33 NNNNNNNNNN ............................. GGCTGATGAGATTGCCCCGGAGCCTGCTGAGTT 4121858 29 100.0 33 NNNNNNNNNN ............................. TTCAATTACCCCATCGACGGTAATGTGATAAAT 4121920 29 100.0 35 NNNNNNNNNN ............................. GACATAGGCCGGGTTCGGATCGCAGCGCACATAGA 4121984 29 100.0 32 NNNNNNNNNN ............................. GCCACCACAGTTGTTGGGGTGGAGGTTGTGGC 4122045 29 100.0 33 NNNNNNNNNN T............................ CTTACCACCATTCGGATGGCGGCTGATACGGGC 4122107 29 100.0 33 NNNNNNNNNN A............................ GTAAATATCGACTACCCCAGTCGCTAAATTGAC 4122169 29 100.0 34 NNNNNNNNNN ............................. GGTGCAGTCGGCGGTGGTTCCAGGATATGAAAGC 4122232 29 100.0 32 NNNNNNNNNN ............................. GATAGGTGCAATGTGTTTGCCACCTTCGTATA 4122293 29 100.0 33 NNNNNNNNNN ............................. GTCTAATCCAGCGGGTTGTAATCCGTAGACAGC 4122355 29 100.0 33 NNNNNNNNNN T............................ GCCGATCGGGATGGCAACGGGAATTCCACCGGC 4122417 29 100.0 32 NNNNNNNNNN T............................ AGTAGTCCGTCCACATCGAAGCAGGTCACGTA 4122478 29 100.0 34 NNNNNNNNNN ............................. GGTTAGCTAATTCCTGATAGCCTTCCGATGAAAA 4122541 29 100.0 33 NNNNNNNNNN ............................. CAATTGTCCGATCTGATAATCCCCGTGGCGAAC 4122603 29 100.0 32 NNNNNNNNNN ............................. GGGTGATTATTGGTCCGAATGGCGCAGGTAAG 4122664 29 100.0 32 NNNNNNNNNN A............................ GGCTTTTGAGGTACAGGTGAACTGAATAGGGG 4122725 29 100.0 34 NNNNNNNNNN ............................. CACCGCATACTGAACTGGATCGCCCGTTTCTACC 4122788 29 100.0 32 NNNNNNNNNN G.CTCAC...................... GTTTGAATCGTCAGCCCCTGCCGTGTATAAAA 4122849 29 100.0 32 NNNNNNNNNN ............................. AATCCCAGCCCGACCGTTATTATTCTCGTTGC 4122910 29 100.0 33 NNNNNNNNNN ............................. CCACAAAAAGAACGTGTACAACCTTCGCTATAT 4122972 29 100.0 32 NNNNNNNNNN ............................. AATAAGCCCAACGAGATGGTGGAAACCGATAG 4123033 29 100.0 33 NNNNNNNNNN ............................. GGGGAAAGATGGGAAGTCAGTAGGTGAAGAGTA 4123095 29 100.0 34 NNNNNNNNNN ............................. GTTTGTAGTAGTGGGGTGTAATTCCCTGCCATTC 4123158 29 100.0 33 NNNNNNNNNN ............................. GCAAATAATTTCGGCTTGTTTTCTGTCCCGGCA 4123220 29 100.0 32 NNNNNNNNNN ............................. GGGAGCAGGCCAGAGCGATCGTAACCGCCTAC 4123281 29 100.0 32 NNNNNNNNNN ............................. CTGATCTGGATATTAGCCTGGCGTTCAATTCG 4123342 29 100.0 33 NNNNNNNNNN ............................. GATGAAAATTCCGAATCATCCACTGCTGCAGAA 4123404 29 100.0 32 NNNNNNNNNN ............................. GCTTATAGCGGCATTAGCAGCAGCTGCTGTTA 4123465 29 100.0 33 NNNNNNNNNN G............................ GCTCCACACCCTGTGGACGTTTGGGCGGCTCAC 4123527 29 100.0 1 NNNNNNNNNN T............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 84 29 32 CGGCTCACCCCCACAGGTATGGGGACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [7,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.50,-9.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [12-11] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [252,21] Score: 0.18/0.18 # # Final direction: R [0.55,0.78 Confidence: LOW] >NC_011884 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 4119513 28 100.0 34 ATGAAGAAGC ............................ CAACATTGACGATGCTCACCTCTACTCCAACCAC 4119575 28 100.0 35 CTCCAACCAC ............................ AGCGTCCGCCTGCGAATCCAGGACAGATAAAGAAC 4119638 28 100.0 33 GATAAAGAAC ............................ TTTAATGGCGATGTGCCAAAAATGCCATAACGC 4119699 28 100.0 33 GCCATAACGC ............................ GCTAACCTGACGGCGGCGTTCTTCCGCAACATC 4119760 28 100.0 33 CCGCAACATC ............................ AACAACATCCTCTCCCAAATTCGGCTCTGGAGC 4119821 28 100.0 33 GCTCTGGAGC ............................ GAAGTCGGACGACTCATCAGCGAAAGAATGGTC 4119882 28 100.0 33 AAGAATGGTC ............................ GGATCAACCGTTGCCCAGAATGTTGCAGAAAGC 4119943 28 100.0 33 TGCAGAAAGC ............................ ATAAGCCCAGGCAATCTCGATTTCTTCGTTCAC 4120004 28 100.0 33 CTTCGTTCAC ............................ GTTTGCCCTACGAAAAGGAGGAATTCGAGGAGC 4120065 28 100.0 33 TTCGAGGAGC ............................ GGGACGATCGGGGACTTCTTTACAGAAAATGGC 4120126 28 100.0 34 AGAAAATGGC ............................ GGACCTGTCCGCGATCGCAAATGCCGTTTCCGAC 4120188 28 100.0 34 CGTTTCCGAC ............................ GATGGATGAGCGACTTTCCACCCAACAATGCTTC 4120250 28 100.0 34 ACAATGCTTC ............................ AACATCAAACACGCTCTCATCGGGAATCCTGTAC 4120312 28 100.0 34 AATCCTGTAC ............................ GGTCGGGTGGTTTTTTTATTGATAATAAATTCAC 4120374 28 100.0 33 ATAAATTCAC ............................ ATTAAGAGCGATCGGGAAGAGATTAAGGCAATC 4120435 28 100.0 33 TAAGGCAATC ............................ GCCCAGTCGGTAATCATGAATTGCTTGGTGTTC 4120496 28 100.0 34 CTTGGTGTTC ............................ TGCTGCCGATAAAATCCAAATCAATGATTGTGTC 4120558 28 100.0 34 TGATTGTGTC ............................ TGGGACAGGGTAAAACTGAAGTTAGCGTTATAGC 4120620 28 100.0 34 GCGTTATAGC ............................ TGCTGCCGATAAAATCCAAATCAATGATTGTGTC 4120682 28 100.0 34 TGATTGTGTC ............................ TGGGACAGGGTAAAACTGAAGTTAGCGTTATAGC 4120744 28 100.0 35 GCGTTATAGC ............................ GTTCAGTCATCGTCCGCTGCCTCACTATCTCTGGC 4120807 28 100.0 34 TATCTCTGGC ............................ TCAACCAAACTTGTAATCATGCTGCTGACCTCCC 4120869 28 100.0 34 CTGACCTCCC ............................ GCCGATCTATAGTGAAGTGCGTACCTACGATGAC 4120931 28 100.0 34 CTACGATGAC ............................ GGAGGGACTAACCACAAATCTAGAGTACGTAGAC 4120993 28 100.0 35 GTACGTAGAC ............................ GAATTGAAAACAATAAAATCGTCTGCGATCGACCC 4121056 28 100.0 34 CGATCGACCC ............................ GTGGCCTCTTCCTCGACCTGTTCATGAGGAGCAT 4121118 28 100.0 33 TGAGGAGCAT ............................ GCTGCTGCTGCCCTTGCTGAGGTTGCGAGGAAC 4121179 28 100.0 35 TGCGAGGAAC ............................ GGCTGTCTGAGCGATTCTCTGAAATCTATCTAACC 4121242 28 100.0 33 CTATCTAACC ............................ AGAAGTGGAGTGAAAAAGAATGGCTGACAACGC 4121303 28 100.0 33 CTGACAACGC ............................ GTTGTTTGTTGCTTTCCAGTAAGCTAAAGGTGC 4121364 28 100.0 35 CTAAAGGTGC ............................ GTGATGTGGCTTGCTCGGGAGGACAGATGAACACC 4121427 28 100.0 35 GATGAACACC ............................ TCCTACGGGACATTGCCAATCGGCTATCTGTAACC 4121490 28 100.0 34 ATCTGTAACC ............................ GTCCCGTTGCCATTTGTTCCACAGCATCCAATAC 4121552 28 100.0 33 CATCCAATAC ............................ TCCTCGCCGACTGGAATCCCTTCATCTGCCAGC 4121613 28 100.0 34 ATCTGCCAGC ............................ GGTCACTGTCAGGGTGGGGGTAACGTATCGCGCC 4121675 28 100.0 33 GTATCGCGCC ............................ ACTGAATTAGCCGATCGCGTCTCTGATGCCTAC 4121736 28 100.0 33 TGATGCCTAC ............................ TCGGTCACCCCGGCCGTGGTCCGCGAAGAAGAC 4121797 28 100.0 34 CGAAGAAGAC ............................ GGCTGATGAGATTGCCCCGGAGCCTGCTGAGTTC 4121859 28 100.0 34 TGCTGAGTTC ............................ TTCAATTACCCCATCGACGGTAATGTGATAAATC 4121921 28 100.0 36 GTGATAAATC ............................ GACATAGGCCGGGTTCGGATCGCAGCGCACATAGAC 4121985 28 100.0 33 GCACATAGAC ............................ GCCACCACAGTTGTTGGGGTGGAGGTTGTGGCT 4122046 28 100.0 34 GGTTGTGGCT ............................ CTTACCACCATTCGGATGGCGGCTGATACGGGCA 4122108 28 100.0 34 GATACGGGCA ............................ GTAAATATCGACTACCCCAGTCGCTAAATTGACC 4122170 28 100.0 35 TAAATTGACC ............................ GGTGCAGTCGGCGGTGGTTCCAGGATATGAAAGCC 4122233 28 100.0 33 TATGAAAGCC ............................ GATAGGTGCAATGTGTTTGCCACCTTCGTATAC 4122294 28 100.0 34 CTTCGTATAC ............................ GTCTAATCCAGCGGGTTGTAATCCGTAGACAGCT 4122356 28 100.0 34 GTAGACAGCT ............................ GCCGATCGGGATGGCAACGGGAATTCCACCGGCT 4122418 28 100.0 33 TCCACCGGCT ............................ AGTAGTCCGTCCACATCGAAGCAGGTCACGTAC 4122479 28 100.0 35 GGTCACGTAC ............................ GGTTAGCTAATTCCTGATAGCCTTCCGATGAAAAC 4122542 28 100.0 34 CGATGAAAAC ............................ CAATTGTCCGATCTGATAATCCCCGTGGCGAACC 4122604 28 100.0 33 GTGGCGAACC ............................ GGGTGATTATTGGTCCGAATGGCGCAGGTAAGA 4122665 28 100.0 33 GCAGGTAAGA ............................ GGCTTTTGAGGTACAGGTGAACTGAATAGGGGC 4122726 28 100.0 41 GAATAGGGGC ............................ CACCGCATACTGAACTGGATCGCCCGTTTCTACCGGCTCAC 4122795 28 78.6 33 ACCGGCTCAC ------...................... GTTTGAATCGTCAGCCCCTGCCGTGTATAAAAC 4122856 28 100.0 33 TGTATAAAAC ............................ AATCCCAGCCCGACCGTTATTATTCTCGTTGCC 4122917 28 100.0 34 TCTCGTTGCC ............................ CCACAAAAAGAACGTGTACAACCTTCGCTATATC 4122979 28 100.0 33 TCGCTATATC ............................ AATAAGCCCAACGAGATGGTGGAAACCGATAGC 4123040 28 100.0 34 AACCGATAGC ............................ GGGGAAAGATGGGAAGTCAGTAGGTGAAGAGTAC 4123102 28 100.0 35 TGAAGAGTAC ............................ GTTTGTAGTAGTGGGGTGTAATTCCCTGCCATTCC 4123165 28 100.0 34 CTGCCATTCC ............................ GCAAATAATTTCGGCTTGTTTTCTGTCCCGGCAC 4123227 28 100.0 33 GTCCCGGCAC ............................ GGGAGCAGGCCAGAGCGATCGTAACCGCCTACC 4123288 28 100.0 33 ACCGCCTACC ............................ CTGATCTGGATATTAGCCTGGCGTTCAATTCGC 4123349 28 100.0 34 TTCAATTCGC ............................ GATGAAAATTCCGAATCATCCACTGCTGCAGAAC 4123411 28 100.0 33 GCTGCAGAAC ............................ GCTTATAGCGGCATTAGCAGCAGCTGCTGTTAG 4123472 28 100.0 34 CTGCTGTTAG ............................ GCTCCACACCCTGTGGACGTTTGGGCGGCTCACT 4123534 28 100.0 GCGGCTCACT ............................ ACTTCCAGAA ========== ====== ====== ====== ========== ============================ 66 28 33 GGCTCACCCCCACAGGTATGGGGACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [7,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.50,-9.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [40.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1370,15] Score: 0.18/0.18 # # Final direction: F [0.96,0.64 Confidence: LOW] >NC_011891 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 888746 29 100.0 32 NNNNNNNNNN ............................. TTGTACGGGCCGTCGATGTCCGTCCCCAACGT 888807 29 100.0 32 NNNNNNNNNN ............................. CTCCCGGTGATGAGCGTCGCGGCGCGGAACAG 888868 29 100.0 32 NNNNNNNNNN ............................. GGATCGCCGAAGTTCCAGGCGGTGATCCGTAG 888929 29 100.0 32 NNNNNNNNNN ............................G CGGGTGCCGGGCCGCGAGAACGCCCTGCACGT 888990 29 100.0 32 NNNNNNNNNN ............................. GGAAGGAGAGAGAGATGGCGACGGATCGTGAA 889051 29 100.0 32 NNNNNNNNNN ............................. CGCTTCCGGATCGAGCACACGCTTCGCCGCCT 889112 29 100.0 32 NNNNNNNNNN ............................. CGCGAGTCCGGCAGCATCCTCGGCATCTACCG 889173 29 100.0 32 NNNNNNNNNN ............................. TGCGGGGCGGCCACCTCGATCGCAACGTCTGG 889234 29 100.0 32 NNNNNNNNNN ............................. TCGCTCGACCTCGACGGCGTGGTCACGCTGAA 889295 29 100.0 32 NNNNNNNNNN ............................. CCCGGGCTCTTCGGCATGTCGCCGATCTGGGG 889356 29 100.0 32 NNNNNNNNNN ............................. TTGGCATCAGCAGTCGGTGGACATCGACGCTG 889417 29 100.0 32 NNNNNNNNNN ............................. TGGCGTCCGAGGCGCTTCGTCCCACCGGCCCG 889478 29 100.0 32 NNNNNNNNNN ............................G GAGAGGGAGACCTTCACGGCGGCGCCGCGCCG 889539 29 100.0 32 NNNNNNNNNN ............................. GCGCAGGAAGGCCAGCGGTGGGCGCAGGCGAA 889600 29 100.0 32 NNNNNNNNNN ............................. CGGTGGACGAGCCGCCGGTCGCGGGTCCAGAG 889661 29 100.0 32 NNNNNNNNNN ............................. GGGCTCGAGGACCTCGAGCAGCTCGCGCGAGA 889722 29 100.0 32 NNNNNNNNNN ............................. GCGGGCAGGTAGGCCCACCCGCACTCGGCGCC 889783 29 100.0 32 NNNNNNNNNN ............................. AAGCGGGTTCGGAACACACGGTCAGCGCTGAT 889844 29 100.0 32 NNNNNNNNNN ............................. GAAGAGGCGCTCTCTCCCGCGCAGGCGCGCGA 889905 29 100.0 32 NNNNNNNNNN ............................. GTCGCCCACGAGAAGCGCCAGGAGGAGCTCAA 889966 29 100.0 32 NNNNNNNNNN ............................G TTGTCCGCAGCCGGTCTGCTCCGCTACGTCGG 890027 29 100.0 32 NNNNNNNNNN ............................. GATCTGGAGGGCCACGCGATCACGATCCGGCT 890088 29 100.0 32 NNNNNNNNNN ............................. TCCTCCCGGTCGCCAGCGAACAGGTACGGACC 890149 29 100.0 32 NNNNNNNNNN ............................. GAGTAGACGCGCGATGCGGTGGAGCGGCAGCG 890210 29 100.0 32 NNNNNNNNNN ............................. GTGTCGATGATGGAGGCCCGGCGAACGCTGGG 890271 29 100.0 32 NNNNNNNNNN ............................. ACCTACTCCGTGATCAAGGCGCTGTTCCGCGA 890332 29 100.0 32 NNNNNNNNNN ............................. TCGTCGGGGCTCCGGCCGGCCGGCAGCGGGCG 890393 29 100.0 32 NNNNNNNNNN ............................. GCTCGGTAGAGCGCAGAGGCCTGCTTCGCGCT 890454 29 100.0 32 NNNNNNNNNN ............................. GGCGCACGTCCCCCACCACCACCGAGAAGGAG 890515 29 100.0 32 NNNNNNNNNN ............................. GAAGGCGCATCCCGCGATCTCGGTCGTCAGAG 890576 29 100.0 32 NNNNNNNNNN ............................. GTGCACACCACCGCGGCGGCCGCCCACGCGCC 890637 29 100.0 32 NNNNNNNNNN ............................. CGTGGAGGCCACCGTCGCCGCCGTCACGTCCC 890698 29 100.0 32 NNNNNNNNNN ............................. CGCGCCGAGCCCGGGTCATTCCCCGACCACTG 890759 29 100.0 32 NNNNNNNNNN ............................. GGGGTGAACCTGCTCACCGCGATGACGCACAT 890820 29 100.0 32 NNNNNNNNNN ............................. TCCGCGGAGCCAGGGCCCTGGACGACGCTGCC 890881 29 100.0 32 NNNNNNNNNN ............................. GGGTCCCACATCCGGAAGGCGCTGTCCGACGC 890942 29 100.0 32 NNNNNNNNNN ............................. CCGTCGAGCAGGTTGCGGAGGTCGGCGGTCGT 891003 29 100.0 32 NNNNNNNNNN ............................. CGCCTCGACCACACCAGGCCGAAGACGCCGGC 891064 29 100.0 32 NNNNNNNNNN ............................. GTCGTGGACGGGCGTGACCGGGAGCGGATACC 891125 29 100.0 32 NNNNNNNNNN ............................. GGCCGGGCCGGGTCCTCCGCGCCGAAGTAGGC 891186 29 100.0 32 NNNNNNNNNN ............................. AGCAGCCCGCGGCCGCCCGTCGCGAGGTGGTG 891247 29 100.0 32 NNNNNNNNNN ............................. TGGCGCAGGTAGGACGGCAGCGTGGCGCTCGG 891308 29 100.0 32 NNNNNNNNNN ............................. TCGACAAGGCGCTGCTCGCGATCTTCGCCGAG 891369 29 100.0 32 NNNNNNNNNN ............................. AGCGCGCCTCCACCCGGCGGCGTCCACCGGGG 891430 29 100.0 32 NNNNNNNNNN ............................. GGCGTGGACCCGAGCCGGCGCGGCTTCCTGTC 891491 29 100.0 32 NNNNNNNNNN .........................G... GAGTACGAGGACGCCAACCTCGTCGCAGCCAA 891552 29 100.0 32 NNNNNNNNNN ............................. CCGTCCGCCACCGGCAAGGTCGTCCTGAGCGG 891613 29 100.0 32 NNNNNNNNNN ............................. TTCCTGACGGCGACGCTGGACGTCGTGGACGA 891674 29 100.0 32 NNNNNNNNNN ............................. TCAGCGTCTCGCCGACGACGCCCGCCGCGTCG 891735 29 100.0 32 NNNNNNNNNN ............................G TCGGCCGTGAAGCGCTTCCGCTCGCCCTGGCG 891796 29 100.0 32 NNNNNNNNNN ............................. TTGTACGGGCCGTCGATGTCCGTCCCCAACGA 891857 29 100.0 32 NNNNNNNNNN ............................. TCCTCGTGGCGTTCGGCCCGGACCCGGACGGT 891918 29 100.0 32 NNNNNNNNNN ............................. CCGAGGTCAATCGTCTCGTCGCTGAACATCTT 891979 29 100.0 32 NNNNNNNNNN ............................. ATCAGCGCCACGTTCGCGAGGACCTGGACGGC 892040 29 100.0 32 NNNNNNNNNN ............................. ATGCGCGAGAGGAGCGAGCCGCGGATGAGCGT 892101 29 100.0 32 NNNNNNNNNN ............................. GAGGTCCAGCGTGTCCTGGGCCGGCGCGGAAC 892162 29 100.0 32 NNNNNNNNNN ..A......................G... TTCTTCGCCCCGGTGGTCGAGCACGGCTTCAC 892223 29 100.0 32 NNNNNNNNNN ............................. GGGAGGACGTTCATCAGCACGACCCGGAGCCC 892284 29 100.0 32 NNNNNNNNNN ............................G TGGCGCGCGACGCCGGCGCTCGCGCGCGCGTT 892345 29 100.0 32 NNNNNNNNNN ............................. ACGCGCGACTTGCCGGTGCCCGGCCGGCCGCA 892406 29 100.0 28 NNNNNNNNNN ......................C.CGG.G CGACGGCGCTCATCGTCGACGCGGACGT 892463 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 62 29 31 GGCTTCCCCGCGTGCGCGGGGATCGACCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [3-10] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [41.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [1352,1235] Score: 0/0.18 # # Final direction: F [0.68,0.37 Confidence: LOW] >NC_011891 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 883709 29 100.0 32 NNNNNNNNNN ............................. CTGGACCGCGACATGCGCGAGGGGCTCGAGCG 883770 29 100.0 32 NNNNNNNNNN ............................. CATGCCGAGTGCCGCTCGCCGGAGCGCCGGTC 883831 29 100.0 32 NNNNNNNNNN ............................T CCGGGTTTGGGGGCTAAGTGAGGCCGGGCCTT 883892 29 100.0 32 NNNNNNNNNN ............................. CCGTACCAGGCCCTGGTGGAGCCGCTCGACGT 883953 29 100.0 32 NNNNNNNNNN ............................. GGGCGGGCCGGGCCGACAAAGGATGACGAGGC 884014 29 100.0 32 NNNNNNNNNN ............................. CCTCGGCCCCACGCGGATCGCTGCTGGTGCGG 884075 29 100.0 32 NNNNNNNNNN ............................. CTCAGGATTGCCAGGAAGCGTGCCGGACTAAG 884136 29 100.0 32 NNNNNNNNNN ............................. GAGCGAATCACGGGGTGGCGCCCGGCACGACG 884197 29 100.0 32 NNNNNNNNNN ............................. CCAGCCGACGTGCCGGGGATGCCGAACATTCC 884258 29 100.0 32 NNNNNNNNNN ............................. CGCCCGGTCGCCGTGGTAGACGCGGATGAGGA 884319 29 100.0 32 NNNNNNNNNN ............................. GGTCGTCGGTTCGCACGCCGCTCTCCATGTCG 884380 29 100.0 32 NNNNNNNNNN ............................. TCTGCAACGTCCAGCCCGCTGCCGCCGGGGCT 884441 29 100.0 32 NNNNNNNNNN ............................. TTCACGGGCGGGATCGACGTGACCGGGGACAT 884502 29 100.0 32 NNNNNNNNNN ............................. GTCGGCGAGCCGCCGCCGCCGGTGAACGCTCC 884563 29 100.0 32 NNNNNNNNNN ............................G CGGAGCGCGCGGAGGCGGCCGAGCCGGCCCTG 884624 29 100.0 32 NNNNNNNNNN ............................. GGGACCGAGTCGCGCGCCAAGTCCGTTGTCAT 884685 29 100.0 32 NNNNNNNNNN ............................T GCGGCCGCAAAACTGACAGGGCGCGGCGGTCA 884746 29 100.0 32 NNNNNNNNNN ............................. GTGATCGCGCCGGTCGGGAAGAAGCGCCCGAC 884807 29 100.0 32 NNNNNNNNNN ............................. CCGGCCTCGTCCACGATCGCGAGGTCGGTCCC 884868 29 100.0 32 NNNNNNNNNN ............................. TGGCAGATCGATAACGCCCGCTCCGCCGACTG 884929 29 100.0 32 NNNNNNNNNN ............................. GGAAGATCGCGGCGACCGCGTAACAGAGAGAG 884990 29 100.0 32 NNNNNNNNNN ............................. TCCTTCGCCAGCTCGGTGAGGTCGGCGCCGGC 885051 29 100.0 32 NNNNNNNNNN ............................. GCGTACCTGGGCGTGCTCGGGCGGCTCTACTC 885112 29 100.0 32 NNNNNNNNNN ............................. GGTGGACGGATCATCACTGATGGGGCGGGCGG 885173 29 100.0 32 NNNNNNNNNN ............................. GCTCGCCTTGTTCGGGAACCGCAGGTCGAGCC 885234 29 100.0 32 NNNNNNNNNN ............................. CGGAATCAGCTTCCGGGAGTCCTCGTGCTTCC 885295 29 100.0 32 NNNNNNNNNN ............................. GCGGAGAGGCCGCCCTCTACGACCTGCAGGGC 885356 29 100.0 32 NNNNNNNNNN ............................. TTGGGCGGCCCGCGCGCGCACCGACTCGTCCA 885417 29 100.0 32 NNNNNNNNNN ............................. CGGAGCGCGACCCGGGCCTCGCTCGGCTGGTA 885478 29 100.0 32 NNNNNNNNNN ............................. GAGGAGCCGCTCGGCGCGGAAGGCGACAGAGC 885539 29 100.0 32 NNNNNNNNNN ............................. GCTCGGTAGAGCGCAGAGGCCTGCTTCGCGCT 885600 29 100.0 32 NNNNNNNNNN ............................. CCGTCCGCCACCGGCAAGGTCGTCCTGAGCGG 885661 29 100.0 32 NNNNNNNNNN ............................. AGCGCCGGGGTTTTCAAGCGGCCACCCCCTGC 885722 29 100.0 32 NNNNNNNNNN ............................. GCCGTCTGGAACGGGAGGTACGGGATCGCCGT 885783 29 100.0 32 NNNNNNNNNN ............................. GGGCAGAGCCACGGCACCTTGCGCAGCCCGCC 885844 29 100.0 32 NNNNNNNNNN ............................. GCCTGGAACGTCTCGGCCGGCTCGACGTGGAA 885905 29 100.0 32 NNNNNNNNNN ............................. TGAACTGGGGTCCCGAGCAGAAGCACGGGGTC 885966 29 100.0 32 NNNNNNNNNN ............................. TCCCAGACGATCTGGCGCATCGCGGTGGCACC 886027 29 100.0 32 NNNNNNNNNN ............................. GGCCCGTACACGTCCGGCCCGGCCAGCGCCGC 886088 29 100.0 32 NNNNNNNNNN ............................. GGTGAGCCCGGCCGCGAGTATCACCGTGGGCG 886149 29 100.0 32 NNNNNNNNNN ............................. GGCGTCTTCCCGCACCCCGGCATGCCCCACAC 886210 29 100.0 32 NNNNNNNNNN ............................. TTCGACTCCGCCACCGGCTGGACGCTGAACGC 886271 29 100.0 32 NNNNNNNNNN ............................. GGGAACCAGGCCACCAGCCCGGGTGGCACGGT 886332 29 100.0 32 NNNNNNNNNN ............................. GATCCGTGGCGTGCTTCGGGCGCTGCGCCGGG 886393 29 100.0 32 NNNNNNNNNN ............................. CCCGGAAAGGTTCCAACCATGTCCGATTGCGG 886454 29 100.0 32 NNNNNNNNNN ............................. CGTCGCTTCATCCCCACCGACCGCCAGGCGCT 886515 29 100.0 32 NNNNNNNNNN ............................. GCGCGTCAGCCGTAGGAACGTCCGCAGTGACC 886576 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 48 29 32 GGCTTCCCCGCGTGCGCGGGGATCGACCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [66,100] Score: 0/0.18 # # Final direction: R [0,0.78 Confidence: HIGH] >NC_011894 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 5490220 29 100.0 32 NNNNNNNNNN .ACC.TCAT...CG.CT............ ACCTCACCTCTCATCCCTGGCTGATCCGTCAG 5490281 29 100.0 32 NNNNNNNNNN ...........T......A.......... TCGCACGCCGCTGCCGGGCTAGAGTAGCGATG 5490342 29 100.0 31 NNNNNNNNNN ............................. GGAAACTCGCTCGCCAACGTGGTCTTGCCGG 5490402 29 100.0 32 NNNNNNNNNN .C.GATCGT...CGCATTCGA........ GATTGCGCAGGCGCAGGAGGCGGGCCGCAACA 5490463 29 100.0 32 NNNNNNNNNN ............................. GCGAGCGCGTGCGCTTCCTGACCGGCGGTCGT 5490524 29 100.0 32 NNNNNNNNNN ............................. CGCGGCTGCGCCTGGCCGAGGAAGCTCTTGAC 5490585 29 100.0 31 NNNNNNNNNN ............................. GCGGCGGGAGGATCAACCTCAATGACGTGCA 5490645 29 100.0 32 NNNNNNNNNN ............................. CGCAGAACGAACTATGACGCGATGGTCTCAGC 5490706 29 100.0 32 NNNNNNNNNN ............................. ATCGGGGATTGGCTGACCCTGTGGCTTGGAAA 5490767 29 100.0 32 NNNNNNNNNN ............................. GTCAGCCCACAGGCTGGCGAGAGCCAGTGCGG 5490828 29 100.0 32 NNNNNNNNNN ............................. CACCGGAAGGCAGCGACAACCGCCGTCAAGTC 5490889 29 100.0 32 NNNNNNNNNN ............................. GCCGCTGGCATCGCGTCTGAGGCAGTGCAGAG 5490950 29 100.0 32 NNNNNNNNNN ............................. CCTCCTGCCCGGATCCGAACACCGGCACCGGG 5491011 29 100.0 32 NNNNNNNNNN ............................. CGTCCTACGGAATGGGCGCGGGCCGGCGGCGG 5491072 29 100.0 32 NNNNNNNNNN ............................. GCAGTCCAAGATGGGTCAGCAGATGCGGAAAT 5491133 29 100.0 32 NNNNNNNNNN ............................. GCTTATCTGGAGCTGACGGATAACCCTGCCAT 5491194 29 100.0 32 NNNNNNNNNN ............................. GCCAGGGATCATGGCCGATACAGCTTCACGGG 5491255 29 100.0 32 NNNNNNNNNN ............................. GGGCGCCGCGGCTTTGCAGCCTTGGGCTCCTC 5491316 29 100.0 32 NNNNNNNNNN ............................. ACGTCCATACCCACGTCCGCGCGGGCGGTTGG 5491377 29 100.0 32 NNNNNNNNNN ............................. CGCCACGGCTGGCCATTGCGCCGAGCGACAGG 5491438 29 100.0 32 NNNNNNNNNN ............................. TGGACCGGCACGCCGCACGCGGCGACTGTGCC 5491499 29 100.0 32 NNNNNNNNNN ............................. CGCAGAACTTGCCACAAACGGCCGATCGGCGT 5491560 29 100.0 32 NNNNNNNNNN ............................. GGCCGCAGCGCGCACCAGAGCGAGGCGCAGAG 5491621 29 100.0 32 NNNNNNNNNN ............................. TTCAGCCAGGAAATCAAGGACTTCACGTCGGG 5491682 29 100.0 32 NNNNNNNNNN ............................. GCCTCCGCGCCCCCTGTCACCGCGTCCGGTGC 5491743 29 100.0 32 NNNNNNNNNN ............................. GCTATGATGTCCGCTGCAAGCAGCGCCTCGTG 5491804 29 100.0 32 NNNNNNNNNN ............................. TCGAAACCAGGCATTCATCAGGCTTCCCAAGG 5491865 29 100.0 32 NNNNNNNNNN ............................. GTCCGCTACCGCAAGCACCCTGACGCGCTTGG 5491926 29 100.0 32 NNNNNNNNNN A............................ GCGTGAGTGAGGAGCACCAGGGCAAGTTCTGG 5491987 29 100.0 32 NNNNNNNNNN ............................. CAAGATCGCCGCGGCCTGGACGGCGCAGGAGC 5492048 29 100.0 35 NNNNNNNNNN ............................. GGCCCGGAGGAGCGCCGCGTTGCGAGGGCGGCCCA 5492112 29 100.0 32 NNNNNNNNNN ............................. ACCACCCCGGACGACCTGCTGGACCTCGCGGA 5492173 29 100.0 32 NNNNNNNNNN ............................. ACGTGACAACTCAAGTGCTCGTCCAGCGTATG 5492234 29 100.0 32 NNNNNNNNNN ............................. CAAACACCGCCCGCTGCGGTGGAAAGGACAGA 5492295 29 100.0 32 NNNNNNNNNN ......................A...... AGAGAGGCGCGCTAGGCCATGCCGGTCTCCGT 5492356 29 100.0 32 NNNNNNNNNN ............................. AGAGTGGCGCCTCAGTATGGCGCTCCGCAGCG 5492417 29 100.0 32 NNNNNNNNNN .................T........... GCGTTGACGGCCGGCTAAATGGGCCGGTCTAC 5492478 29 100.0 32 NNNNNNNNNN ............................. CGGCGCCACGTCTGCCGGCCAGCGCCGTGTTT 5492539 29 100.0 32 NNNNNNNNNN ............................. ACGTCGGCCGGGCGGAGAGCTCGCACCTCGTC 5492600 29 100.0 32 NNNNNNNNNN ............................. ATCCTGCTCGGCGCCGTGCTGATTGCCGCGAG 5492661 29 100.0 32 NNNNNNNNNN ............................. AGGCAGAAGCAGCTCGCCTGATCGTCCCCGGG 5492722 29 100.0 32 NNNNNNNNNN ............................. CGTCCGGCGCCGTGCTTCTTCATCAGTTGCAT 5492783 29 100.0 32 NNNNNNNNNN ............................. GGTTGGTCGATGGTCAGCATCGGCGGCGCTGA 5492844 29 100.0 32 NNNNNNNNNN ............................. CCGTCCGTTGCCGCTACCGTTAGCGGGTCGAC 5492905 29 100.0 32 NNNNNNNNNN ............................. AATGGCAGTCCTGAGAATGGTGAAGTGACCAG 5492966 29 100.0 32 NNNNNNNNNN ............................. GGCAGCCCGGCCACCCAGGCGTCGAGGTGGAA 5493027 29 100.0 32 NNNNNNNNNN ............................. GTCACGGTGGACGACACGCGGCCCTGGTAATT 5493088 29 100.0 32 NNNNNNNNNN ............................. ATGGCACGCGGCATGAAGGCGATTGCCGAGAT 5493149 29 100.0 32 NNNNNNNNNN ............................. TCACCCGATAGGCTCAACGTGATGCCCGTGAC 5493210 29 100.0 32 NNNNNNNNNN ............................. CGCCCCGCCTGAACGTCCATGTCGTGGAGCAT 5493271 29 100.0 32 NNNNNNNNNN ............................. AGCAGCTTCGAGGTGATGTTGTCGGCCACTAG 5493332 29 100.0 32 NNNNNNNNNN ............................. TTGCGAGAGCCGGGCCTAACACGTTGTCTAAG 5493393 29 100.0 32 NNNNNNNNNN ............................. ACGTTCTGATCCCGCCAGTTGAATGCCCCGTA 5493454 29 100.0 32 NNNNNNNNNN ............................. CCGTCCGGGCATGTGGTCAAGGGCATCTCTGC 5493515 29 100.0 32 NNNNNNNNNN ............................. CAGGTGCCGCACGATGCTCTGGCGTGTAAATA 5493576 29 100.0 32 NNNNNNNNNN ............................. CAAATCGGGAACGCGGCAATCGATCCGGTTCC 5493637 29 100.0 32 NNNNNNNNNN ............................. GGCCTCCCTTGCGACCCGCGGCCGTGGCCGAG 5493698 29 100.0 32 NNNNNNNNNN ............................. TACATTGTACGTTTCAATGACCGTGAGGCCGA 5493759 29 100.0 32 NNNNNNNNNN ............................. CGATAACTACTCTATTCTAAAGGGCACTGTTA 5493820 29 100.0 32 NNNNNNNNNN ............................. ACCTCCTGAAACAAGGCGCGGATCTCCTCGAC 5493881 29 100.0 32 NNNNNNNNNN ............................. AAGTCGATGCCGATACCTGGGTGCTGTTCGGA 5493942 29 100.0 32 NNNNNNNNNN ............................. GATCTCGGCGCCGCCCGACCTGTTCCAGGTGC 5494003 29 100.0 32 NNNNNNNNNN ............................. TGCCGCGCGAGCGGTCAGCTCGGGCGCCTTAT 5494064 29 100.0 32 NNNNNNNNNN ............................. ATCCGGTCGCGCAGGCGCACGATCTCCCGCGC 5494125 29 100.0 32 NNNNNNNNNN ............................. TACGCACGGCGCAGTCGGCGGATTTCTGCAAC 5494186 29 100.0 32 NNNNNNNNNN ............................. GGATCAAGGGCCGTCGCGCCCTTCTTCTCGAA 5494247 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 67 29 32 CGGATCATCCCCGCATCCGCGGGGGACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [29-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [35.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [665,94] Score: 0.18/0.18 # # Final direction: R [0.55,0.68 Confidence: LOW] >NC_011894 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 623501 36 97.2 34 AACAGATCGT ...........A........................ CCCCCGTGTCCACATCGACGGCCGCGATGCACCA 623571 36 100.0 35 CGATGCACCA .................................... TTCCGGCGACCCTGGATCTGCACGGCTACACAACT 623642 36 100.0 35 CTACACAACT .................................... TTGGCCCCGCCGGCACCGGGTAGGAGACCCGCCAT 623713 36 100.0 33 GACCCGCCAT .................................... ATAGTTCTGGCTGTTGGAGGCCAGATTGTTCTG 623782 36 100.0 35 GATTGTTCTG .................................... CTGACCTTCACGCGTGTCTACTCGGGCGTGGCCAA 623853 36 100.0 35 GCGTGGCCAA .................................... GTCCAGGCCGAGTTGGGCAAGGTCCGCCGGATCCT 623924 36 100.0 GCCGGATCCT .................................... GGCGGGCACG ========== ====== ====== ====== ========== ==================================== 7 36 34 GTGCCAACGCGCTCAGGATCTGGCGCCCACTGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.20,-8.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [38.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [633,281] Score: 0.18/0.18 # # Final direction: F [0.82,0.78 Confidence: LOW] >NC_011894 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 6088472 31 100.0 35 CCGAGTCCTC ............................... ACGCGGCGAACACCCAGTCGATGTAATCGCGGGCC 6088538 31 100.0 35 ATCGCGGGCC ............................... GTCAGGCCCCACTCCAGGGTGCAGCTCCGCCCCGT 6088604 31 100.0 35 TCCGCCCCGT ............................... GAGGCCGGGCCCGTTGCCGTCACCGTGGCGTCCGA 6088670 31 100.0 35 TGGCGTCCGA ............................... CGGTTGGTGTCGACCCCCTTCATGCTCGCGTCGCG 6088736 31 100.0 34 TCGCGTCGCG ............................... GGATTGCCGCTTGGTCACCCGAGCGCAGGGCCTT 6088801 31 100.0 35 GCAGGGCCTT ............................... ACGCGGCGAACACCCAGTCGATGTAATCGCGGGCC 6088867 31 100.0 34 ATCGCGGGCC ............................... CGCTGATCGCCTTACCGACCGCTTGCAGGCCGAA 6088932 31 100.0 39 GCAGGCCGAA ............................... TTCCTGCGTCGTGTCGAAATCGCCGGCCGGGGTTAGCAG 6089002 31 100.0 35 GGGTTAGCAG ............................... CCCAACCCGTAGCGGTCGTTCCACAGCAGGTCGTG 6089068 31 100.0 35 GCAGGTCGTG ............................... GGCGGCGCCACTTGCGGCTGCTGCATCCCGGCGAA 6089134 31 96.8 TCCCGGCGAA ..................-............ GGCCCAAGTG ========== ====== ====== ====== ========== =============================== 11 31 35 GTTTCAATCCGCGCCCCCGTGAGAGGGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [5,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.90,-4.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [21.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [221,346] Score: 0/0.18 # # Final direction: R [0.41,5.14 Confidence: HIGH] >NC_011894 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 863101 28 100.0 37 CCTCGCTGCC ............................ GACTGGACCTGGCGGAGTGAACCCAGTCGCAGCCCGC 863166 28 100.0 38 CGCAGCCCGC ............................ GACTGTCTCGCTTGCGCGTTCTGCGCTCGCTCTCGACT 863232 28 96.4 40 GCTCTCGACT ..................C......... GGCCTCGGCGCCACGCCCGAGGAGGCCCGGGAGCGGCGGT 863300 28 100.0 36 GAGCGGCGGT ............................ GACGCAGGTCACGAGCATCGCGGTTTCGCAGTGGAC 863364 28 100.0 36 CGCAGTGGAC ............................ GACGTTCAAGCTCGCTAACAAGCTCTCCGCGCTGGA 863428 28 96.4 36 CCGCGCTGGA .......................A.... GACCGAGGCGCTGGCCGCCTACCGGGCCGAGGCGCT 863492 28 89.3 41 CCGAGGCGCT .........................--- TGCGACTTGCTCGCCCTGCTCAATCCGATCGGCCTCGTGAC 863561 28 100.0 38 GCCTCGTGAC ............................ GACGCCGTGGGCGTCACCTTCGAGCCCTGGAACGCCAA 863627 28 100.0 38 GGAACGCCAA ............................ GACCGGACCGCGAGGTGGGCTTCCTGGCCCCGCACGAT 863693 28 100.0 CCCGCACGAT ............................ GACTGCGCCA ========== ====== ====== ====== ========== ============================ 10 28 37 GTTTCAATCCGCGCCCCCGTGAGGGGGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [3,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.40,-1.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [20.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [332,182] Score: 0/0.18 # # Final direction: R [0.78,5.14 Confidence: HIGH] >NC_011898 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1802270 32 100.0 36 NNNNNNNNNN A..AAAT.GGGGTA...TCA............ AAAATCTCAACATCCTTACTATCGTGGTATATCCAG 1802338 32 100.0 34 NNNNNNNNNN ................................ TCCACGATCTTGGTAAAGCGGGCTACCACAACAA 1802404 32 100.0 33 NNNNNNNNNN ................................ CGATTATTTTGCCCATAAAAAAAGCAATAACCC 1802469 32 100.0 37 NNNNNNNNNN ................................ TGCGAGAAAATATACCGTTACAAATCGTCAGTAAGAA 1802538 32 100.0 36 NNNNNNNNNN ................................ TGCAAATGCTACACAGGTAGTTTTGAACCGTTCGCC 1802606 32 100.0 36 NNNNNNNNNN ................................ TGATGATGAGAGGATTGTATATACCGAGGTTAAAAA 1802674 32 100.0 35 NNNNNNNNNN ................................ AGAAAGTGAATCATGGCCAATGATTTTAGTAATGG 1802741 32 100.0 34 NNNNNNNNNN ................................ CTTCAAAATTCCACGATGTTTTTATTTCTACCGG 1802807 32 100.0 1 NNNNNNNNNN ..........A..........ACATG.TT.TG NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 9 32 35 GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [6,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.70,-3.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [14-10] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [56.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [50,134] Score: 0.18/0.18 # # Final direction: F [4.87,1.23 Confidence: MEDIUM] >NC_011898 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1800644 32 100.0 34 TATTTTTGCT ................................ TCAGGAATAAATACAATGTGATACTGTCCAACCC 1800710 32 96.9 35 TGTCCAACCC ..........A..................... AAATGAACTCTGGTATGTCAAGGATCTGGAGCAGG 1800777 32 96.9 36 CTGGAGCAGG ..........A..................... CTTACTCCCGCAATGGTTTGAGGTTGATTTGTCGAA 1800845 32 100.0 34 ATTTGTCGAA ................................ GTCAATGTGGAGAGCATTTGCAAGTTCGGATATA 1800911 32 100.0 TTCGGATATA ................................ TCCTAAAGCTTCAAGCTTGGCTATTGATAGTGTGG ========== ====== ====== ====== ========== ================================ 5 32 34 GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [6,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.70,-3.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [173,136] Score: 0/0.18 # # Final direction: F [5.14,0.37 Confidence: HIGH] >NC_011898 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3652357 36 94.4 30 CTAATGTTTA ...........G.....A.................. TAAAAAATAAGCAAGCGATGATATGAATGC 3652423 36 100.0 31 ATATGAATGC .................................... TATATTTGTAAGCATCATATTCACCAATAAG 3652490 36 100.0 31 CACCAATAAG .................................... TATATTTGTAAGCATCATATTCACCAATAAG 3652557 36 100.0 31 CACCAATAAG .................................... TATATTTGTAAGCATCATATTCACCAATAAG 3652624 36 100.0 30 CACCAATAAG .................................... CTATTATCTATATTATAAATTATCATATAT 3652690 36 100.0 30 TATCATATAT .................................... CTATTATCTATATTATAAATTATCATATAT 3652756 36 100.0 30 TATCATATAT .................................... GGTAACACGTTGCTAACAGTGATTAGTTTA 3652822 36 100.0 30 GATTAGTTTA .................................... CAATTATTATAAGCCGTTAAATGGCAGAAA 3652888 36 100.0 ATGGCAGAAA .................................... ACCATTCAAT ========== ====== ====== ====== ========== ==================================== 9 36 30 GTTATAGCTCCAATTCAGGCTCCGATATGCTATAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.50,-3.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [629,68] Score: 0.18/0.18 # # Final direction: R [0.18,0.78 Confidence: MEDIUM] >NC_011899 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1621711 37 100.0 37 TATGAGGTAA ..................................... CCTCCTCAAAATAGGTTATTGCCATATATACCCCTGT 1621785 37 100.0 37 ATACCCCTGT ..................................... TTATATGTTGCAACACTTACATCTCCTTTATTTCAAG 1621859 37 100.0 36 TTATTTCAAG ..................................... TCAACCTGAAAATCCTTTAGAAAGTCCCTTTTAATC 1621932 37 100.0 37 CCTTTTAATC ..................................... CGCCTACCGGACAATTTACCAGGAAAAAAGACCCGCT 1622006 37 100.0 35 AAGACCCGCT ..................................... CCGATTTATACCGTTTTTCGATATCAGGGTAGTTA 1622078 37 100.0 38 AGGGTAGTTA ..................................... CAACCTTTTTCATGACCCCAATTTAACTATTGGGCATT 1622153 37 100.0 37 ATTGGGCATT ..................................... CTAGATTAACTATTGAAAACCACCTTATATCTTCAGA 1622227 37 100.0 34 TATCTTCAGA ..................................... CATTCGGTAGCTTCTGAATCTTCCCATTTGAGGG 1622298 37 100.0 36 CATTTGAGGG ..................................... TGGAGTGGTGGCCGAATTGGCGATGGCGCCGGACTG 1622371 37 100.0 35 CGCCGGACTG ..................................... TGATTACCTAAAGTCAAATCGTAACTAGCTGGTTG 1622443 37 100.0 37 TAGCTGGTTG ..................................... CAATAAGGGGTGATTGTTTTGGCCCACTTACAAAAAA 1622517 37 100.0 36 TTACAAAAAA ..................................... TATTTGTGATTTGTTTGATAGTCATCAACCTATCAT 1622590 37 100.0 36 AACCTATCAT ..................................... TCTGAAAGCAGGTACTTATGTTGAGCCTATTCGTGG 1622663 37 100.0 36 CTATTCGTGG ..................................... CTGGAAAGAATGTAAAACTAGGGGAAAAAGCTATCA 1622736 37 100.0 35 AAAGCTATCA ..................................... CTAACACTAGCATTATAAGGCGGATCAGTCAACAC 1622808 37 100.0 37 CAGTCAACAC ..................................... TTAGCATAGAACTCCTCCAATCTCGATAACCAGTCTC 1622882 37 100.0 36 AACCAGTCTC ..................................... CTAAAACCGGCAGAAGAAAAAGAAAATATAAAAATA 1622955 37 100.0 38 TATAAAAATA ..................................... GCATAGCACAATTATTTTAGAAGGGTGATGTTTTTGAG 1623030 37 97.3 34 TGTTTTTGAG ....................................T TAATATTAACTTTCCAATTATCAGGTTTGCTTAA 1623101 37 100.0 35 GTTTGCTTAA ..................................... TTCTGTTGAAGCATCTGTTATGTTTGGCGATTCAT 1623173 37 100.0 34 GGCGATTCAT ..................................... CCAATGATCTTTGCCAAATCCTCTTGAGAATAAT 1623244 37 100.0 TGAGAATAAT ..................................... CGTTTTAATT ========== ====== ====== ====== ========== ===================================== 22 37 36 GTTTCAATCCTTCTTATGCTGGATGTATCAATTAATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.70,-2.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1513,200] Score: 0.18/0.18 # # Final direction: R [0.96,4.77 Confidence: HIGH] >NC_011901 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2573620 36 100.0 36 NNNNNNNNNN CGAATCTCTGACT.AG.A.ACT.............. ATGGCTGCGGCAGAGAGATCGGCCAAGAGATTCGGC 2573692 36 100.0 37 NNNNNNNNNN .................................... GGGCGCCGGTGATCGGCACGCTAATCGTCTCGTTGTC 2573765 36 100.0 36 NNNNNNNNNN .................................... AAGGACACCGAGGGCTGCCCCGTCACTGCCACACTG 2573837 36 100.0 36 NNNNNNNNNN .................................... TTTGCAAAAATGCAACCCGGTGACAGTGTGTTCATT 2573909 36 100.0 36 NNNNNNNNNN .................................... AAGAGCTTTGATGAAGTCGTGATCCACCCCCGGTGT 2573981 36 100.0 36 NNNNNNNNNN .................................... TGATCGACGTGGACACGCTGGACCACCTTGTGGTGC 2574053 36 100.0 35 NNNNNNNNNN .................................... ACCGGTCTGCCCGTGCGTAACGAGCGCCGTAACAG 2574124 36 100.0 38 NNNNNNNNNN .................................... GCGGCGCCGAACTGGAGGCCATGGGCATTGTCCCCGTG 2574198 36 100.0 36 NNNNNNNNNN .................................... TCAGCAGCGGAACCAGCGTGGAACCGCTGTCCTCGC 2574270 36 100.0 37 NNNNNNNNNN .................................... GGGTCGTCGTCAGTAGTGCTCATCTCGATGCCGGCGC 2574343 36 100.0 36 NNNNNNNNNN .................................... GGCCGCAAGCCCGCACAGCAGGACCGGCCGGAACCT 2574415 36 100.0 36 NNNNNNNNNN .................................... GTACCGCTGCTCTGGATCGGCCCCGAGTCGGCCAAT 2574487 36 100.0 36 NNNNNNNNNN .................................... GTAGTGCCTGTCATGACGTTTGCGACGGGCGCACAA 2574559 36 100.0 35 NNNNNNNNNN .................................... AAGGATGCGGCACGCATTGACTGGCTGGCAGATCC 2574630 36 100.0 36 NNNNNNNNNN .................................... AGTGACGGTGAGTTCGTGGACGTGGGCGGTTCTGTC 2574702 36 100.0 38 NNNNNNNNNN .................................... GCTGCCGGGGGAGTGACGCCGATGCAGACACTGGAGCT 2574776 36 100.0 37 NNNNNNNNNN .................................... GCTGCTGTCGGAGATGCTGCGCACCGTGGCCTTTCAG 2574849 36 100.0 36 NNNNNNNNNN .................................... GCCTTGGTTTTCGCCGGCGGCTTGGCCTCGACGATC 2574921 36 100.0 37 NNNNNNNNNN .................................... TCCAGCGCCGGGTCGGCACCGACAGCTTGTTGCGCAG 2574994 36 100.0 37 NNNNNNNNNN .................................... CCGGTGAGACGAATGTCAAGAAAGCCGTGGCTGAGGC 2575067 36 100.0 35 NNNNNNNNNN .................................... GTCGTTCTTCTCGATGTCGCCTTCCCAGCATTCTC 2575138 36 100.0 38 NNNNNNNNNN .................................... ACCCGTTCGCCGGTTGTCAGAATCCGCCCCCGGTGCGG 2575212 36 100.0 36 NNNNNNNNNN .................................... GCGCTGGGCCCGGGTCTATGGCCCTGTCTGGTGCCC 2575284 36 100.0 37 NNNNNNNNNN .................................... AAGGCTGTTGAAACATCGCAGTCGTTAGGATCACTGC 2575357 36 100.0 38 NNNNNNNNNN .................................... ATGAGTAGTCAGTCCCTTGATAGATGAAACGGCGAAGA 2575431 36 100.0 38 NNNNNNNNNN .................................... GTGTCATCGTCCAGGAACTGGTCGTCGTTGGTGGTGCC 2575505 36 100.0 35 NNNNNNNNNN .................................... TCCAGGCAATCCGCCACCAGGACCATGGCAGCGCG 2575576 36 100.0 35 NNNNNNNNNN .................................... GGGAGGAGCCCGGGGCAGGTGTCCCGGGTGGACGA 2575647 36 100.0 35 NNNNNNNNNN .................................... GCCGGGCGCAGGGGGTTCCCCGACTACATGCTGAA 2575718 36 100.0 37 NNNNNNNNNN .................................... ACTCCCGCGGCATCAAGTACATCGACAAGGCTATCGG 2575791 36 100.0 38 NNNNNNNNNN .................................... CTGTCCTGGAAGTCGCTGGGCTTTGCAGCACCCTGGGT 2575865 36 100.0 38 NNNNNNNNNN .................................... GACACATGAAGAACCGTGCCGCAATGCTGGCAGGCTTC 2575939 36 100.0 37 NNNNNNNNNN .................................... GGCGCTCCAGCAGGCTGAAGCCGCCCAGCAGCAGGCC 2576012 36 100.0 39 NNNNNNNNNN .................................... CTACCAGCACGGCCCGGCTGGCTTTCAGGCTGCTGCAGT 2576087 36 100.0 35 NNNNNNNNNN .................................... AAGTTCATCAACGTGGTGGCCTTCTCCGGCTTCGG 2576158 36 100.0 35 NNNNNNNNNN .................................... GAGGCCCGAATGGTTACTTCTTGGCGAGATCTCCA 2576229 36 100.0 37 NNNNNNNNNN .................................... ATAACACCGATGTTCAGGTATTTTCCGGCAACTCCAA 2576302 36 100.0 37 NNNNNNNNNN .................................... ATGGGATGCCCTCGCGCATGAGATCAAAGCCAGGCTT 2576375 36 100.0 37 NNNNNNNNNN .................................... ATCTGGGTGCCAGGTGAGGGCCTGACCAAGCTGTGAG 2576448 36 100.0 36 NNNNNNNNNN .................................... GTTGTGAGACGCTGATAAAAACCAGTCAAGGCTGTT 2576520 36 100.0 36 NNNNNNNNNN .................................... GGAAAAGCACGGCGCTGAAGGCCGGCGGATCCTCGC 2576592 36 100.0 38 NNNNNNNNNN .................................... TAACCGCGCCCAGGAGGAGCTGTACGGGACTGCATGGG 2576666 36 100.0 37 NNNNNNNNNN .................................... ACCTGATCCGCGGGGTGATCGTGGCTCCGCCAGGGGA 2576739 36 100.0 36 NNNNNNNNNN .................................... ACGCCCGCCCCCTCAACCGGTGAGACGAATGTCAAG 2576811 36 100.0 35 NNNNNNNNNN .................................... GCCTTTGAGGGCGTCACCGAAGCCAGCGTCCTGGT 2576882 36 100.0 38 NNNNNNNNNN .................................... CTCCCATGGGTGGGAATCTCCCCCGTCTCCTGTGGCAG 2576956 36 100.0 37 NNNNNNNNNN .................................... TGCGGGTATTCGCTCGAAATCAACTCATGGTTCAGAG 2577029 36 100.0 37 NNNNNNNNNN .................................... GCTGCTGGTCACGCCGTGGATCGTTTAAGGGGGTGTT 2577102 36 100.0 40 NNNNNNNNNN .................................... ACCCCGCCGCCTCCCCCTGGCGCATTGCCGTCTCGATGCA 2577178 36 100.0 37 NNNNNNNNNN .................................... GCCGTCTGGCGATGATTCCGGCCGGTACCTTCAACCA 2577251 36 100.0 37 NNNNNNNNNN .................................... GGATATGGATCGGAGGACGTGGGCCTTTGCCCAGCTC 2577324 36 100.0 37 NNNNNNNNNN .................................... GGAAGAGTACCCGCACTCGGCGGCTAGGGAGCTCTGG 2577397 36 100.0 37 NNNNNNNNNN .................................... TGCCACCGTGCCCTCCCGCGCGAGGCCTTCCGCGACA 2577470 36 100.0 38 NNNNNNNNNN .................................... GCAGCTTCGCCCACTGGTGCTTGGGCTGGGCAAGCTGG 2577544 36 100.0 37 NNNNNNNNNN .................................... CTCATGAAAGAAGACCAGGACCAATGGCAACGAAGCA 2577617 36 100.0 37 NNNNNNNNNN .................................... TCCATCTCCGTGAACAGGGCATCGGGCACGTCCCAGG 2577690 36 100.0 38 NNNNNNNNNN .................................... ACCCCGGGCGCGTCCACGAACAGCTGGCACCTCACTGA 2577764 36 100.0 38 NNNNNNNNNN .................................... CGCGAGCTCCTTGCGCTCGGCCGGGGTCAGGTGGCGCT 2577838 36 100.0 35 NNNNNNNNNN .................................... GCGCCTATCCGGCGGCCGAGCTCAACCTGTCCCCT 2577909 36 100.0 36 NNNNNNNNNN .................................... GGTACCCTGCCAGACGCGGTTCACCTGCGTGGAGGG 2577981 36 100.0 35 NNNNNNNNNN .................................... CACGCATGTCATTCTTTCCTGTATCTGTAGGTTTC 2578052 36 100.0 35 NNNNNNNNNN .................................... GCGGGGAACTTGACCTGAACGCCCTGGCGCGCCGC 2578123 36 100.0 36 NNNNNNNNNN .................................... ATCCACTGGCGCGCCGCCCGCTCAGCCATGGAATAA 2578195 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 64 36 36 GCTTCAATGAGGCCGCGGCTAAATGCCGCGGATGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-16.00,-15.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [36.7-40.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [617,236] Score: 0.18/0.18 # # Final direction: F [0.92,0.41 Confidence: MEDIUM] >NC_011901 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 1919871 35 100.0 35 AGGGCATGCT ................................... CTAGCATATTGAGTACTTTATTCATGTACTCGTTC 1919941 35 100.0 34 GTACTCGTTC ................................... CTCTTCGGCCACGATTATTTTGAACATGTTCATG 1920010 35 100.0 36 CATGTTCATG ................................... CCCTTTCAAAACTTCCAGTTTCTTGCTCATCACTGA 1920081 35 100.0 38 TCATCACTGA ................................... CCTGGTTACGAGCAGAACAACGTCATCGTAAAACCGGC 1920154 35 100.0 34 TAAAACCGGC ................................... CGTTGACTGAATTTCATGCGCACGGGAATGGCTT 1920223 35 100.0 36 GGAATGGCTT ................................... AACACAAACAGAAAATGCTGCCATGTTATTTCTCCT 1920294 35 100.0 35 TATTTCTCCT ................................... CAAGCGATAAGAGCAGTCATGAGACACCTCATTTG 1920364 35 100.0 38 ACCTCATTTG ................................... CCGAAAGGGTAATCACTTCACCGTTGGCTTTCTTCTCG 1920437 35 100.0 TTTCTTCTCG ................................... ACCCGAATAA ========== ====== ====== ====== ========== =================================== 9 35 35 GTCCCTACCCGGGAAGCCGTTAAGGCTGTTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.70,-4.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [259,169] Score: 0/0.18 # # Final direction: F [0.74,0.27 Confidence: MEDIUM] >NC_011959 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 31267 30 100.0 38 NNNNNNNNNN .............................. CTGTCGGCACGACGTACACCTGCCCGGTATACACCCAG 31335 30 100.0 40 NNNNNNNNNN .............................. CGTGTACGCGTGTCGCAACGGTGAGGGCTGGCGGCATCGA 31405 30 100.0 36 NNNNNNNNNN .............................. AAGCGGTCGATGACTGGAGCGACAGTGGCGGACTCG 31471 30 100.0 40 NNNNNNNNNN .............................. GTGCGACCTGCAACCGACTGATCAGTTCGACCTTGGACTG 31541 30 100.0 36 NNNNNNNNNN .............................. CTAACTGACTAGAACAGACAATCGTGCTTCCAGCTT 31607 30 100.0 36 NNNNNNNNNN .............................. CTTCCTACGAGGTTGAAGACCTCGTGGAAGAGGAGG 31673 30 100.0 35 NNNNNNNNNN .............................. CTCTCCCTGCTGTCCCGCTTCTCGCTGCGCCTGAC 31738 30 100.0 35 NNNNNNNNNN .............................. CCAGTTCGCCCAACACGTCCAGAAATCGCTCGTCC 31803 30 100.0 37 NNNNNNNNNN .............................. TTGGGGGTCTCGATGTCAGCACTCATGATGAGATCGT 31870 30 100.0 36 NNNNNNNNNN .............................. CGGAATGTGCGGAACGTATGCGGAGGATTATGGCAT 31936 30 100.0 38 NNNNNNNNNN .............................. ACGGTACGTCGTTGCCAGCCACCACAACGATCCCATGA 32004 30 100.0 36 NNNNNNNNNN .............................. GAAGCGGAAGTGGAAGCACGACTCGAGCGCAAGGGT 32070 30 100.0 37 NNNNNNNNNN .............................. TGGATACTGACTCGCGGAACCTCAGTGTGGCACATCC 32137 30 100.0 36 NNNNNNNNNN .............................. TCGATCGCGATTACGAATGCACAGGCAGTTCCTCCG 32203 30 100.0 37 NNNNNNNNNN .............................. TTCTCGCCGAGTCAGCTCCACAACGGCGGTAGCTCGA 32270 30 100.0 36 NNNNNNNNNN .............................. AGTCTTCCTGGCTCAGCCCCGCCAGCGACACAACAC 32336 30 100.0 36 NNNNNNNNNN .............................. TGTCATGGTATGCTATGGAGCGAAGGAGGATGTGCT 32402 30 100.0 36 NNNNNNNNNN .............................. AGCGCCTGATAGTACTCTGCCAGCAATCCTGCAACT 32468 30 100.0 36 NNNNNNNNNN .............................. ATACCAGGACCACTGTAGCCCTTCTGCTTCGCCACG 32534 30 100.0 36 NNNNNNNNNN .............................. CATCAAGGCTGAGGAGGTCGGCTCTGCGCTCGGTCG 32600 30 100.0 36 NNNNNNNNNN .............................. TGACTGCGACCCACAACGGTCTCCTCACGCTGTTCG 32666 30 100.0 35 NNNNNNNNNN .............................. TATGGCCCGAGCTGGACGATCGCTGGTTTCTGCAC 32731 30 100.0 38 NNNNNNNNNN .............................. CACAGCATGCAGCGTGGGAATCGAGCGAGGAACGCCGC 32799 30 100.0 37 NNNNNNNNNN .............................. GCTGGCCCGTGCTGCAATCGACCCACGATTTGTCTAC 32866 30 100.0 35 NNNNNNNNNN .............................. CAGGCCCTCACACCACCCGTCTACAGCCCTAACCA 32931 30 100.0 35 NNNNNNNNNN .............................. ATCTACTACGCTTCGGAAGCCTTACAGCGGCGAGA 32996 30 100.0 36 NNNNNNNNNN .............................. CGAGGCATGAGCACTCTCCCCACGTGGGGCTGACTA 33062 30 100.0 38 NNNNNNNNNN .............................. CGACTCGCTCCTCATAGGGCAAGACGTAGTCGGTATAA 33130 30 100.0 35 NNNNNNNNNN ..........G................... TCTCCACTGCACGCAACGACGTGAACGCCATTCGC 33195 30 100.0 37 NNNNNNNNNN .............................. TAGGTAGACACCGTTGGCGACCTCGCCGGGCGTCAGC 33262 30 100.0 37 NNNNNNNNNN .............................. ACGGGATCGTCACGATACGTTGGTATGACGCATACGC 33329 30 100.0 36 NNNNNNNNNN .............................. TTCGACGCAGCGACGCAATCGCGTCGCTGCCGCTGG 33395 30 100.0 36 NNNNNNNNNN .............................. TGCGAACCAGCACGCCGGCGTAGCCGGGAGGCATGA 33461 30 100.0 37 NNNNNNNNNN .............................. CCGCGATGAGCATCCGCTCGGGCGGTTGCGGGTCGGC 33528 30 100.0 37 NNNNNNNNNN .............................. CTTCGTCGAAGAGAGCCTCCGCATGTACGAGCAGTTT 33595 30 100.0 35 NNNNNNNNNN .............................. AAGCAGCGTGGCGACGCGAAGTCGAAGGCGAGTAC 33660 30 100.0 38 NNNNNNNNNN .............................. TTGGTCGTGCGTCGCGTCGCTGGGTGGTGCGGGATCAG 33728 30 100.0 36 NNNNNNNNNN .............................. TCCAGTTTGCGGTCAGCGCCTGCGGCGTGACAGGAC 33794 30 100.0 37 NNNNNNNNNN .............................. CGCCTCGTGCAGGATCGCCTCGAAGCGCTGCGCAGTG 33861 30 100.0 35 NNNNNNNNNN .............................. CTGCGCGAACTGGATCGCATCCCAATAGCTCTTAC 33926 30 100.0 36 NNNNNNNNNN .............................. CTTCTCGCTGCGCCTGGCGACGAAAGGCACCGACCA 33992 30 100.0 36 NNNNNNNNNN .............................. GCACCCGCAAGGAGCGGCGGAAGCCGCTGAAGAGAA 34058 30 100.0 35 NNNNNNNNNN .............................. CCACGCGCCCCTCGCTATCGCGCACCAGCTCCCCA 34123 30 100.0 36 NNNNNNNNNN .............................. GATGCCCTGAATGCCGGTCTCGAGCATTTGCGTTAC 34189 30 100.0 35 NNNNNNNNNN .............................. AACGCGCGCTCGAGGAGAGCGCGAGCCTCGTACCC 34254 30 100.0 36 NNNNNNNNNN .............................. GTTGAGTTGCTCGGACGCCGGAAGCTGCACTGGGTG 34320 30 100.0 36 NNNNNNNNNN .............................. CTTCTCCCTCGGGAGCCAGTGGGTTCTCGACACCGC 34386 30 100.0 36 NNNNNNNNNN .............................. CTGCACGGTGGTCCCTGTCCTGCGCCCACCGTGGGA 34452 30 100.0 35 NNNNNNNNNN .............................. GCGTGCTCTGGAGCTGATCCGGGACCTCCACGATG 34517 30 100.0 37 NNNNNNNNNN .............................. ACGGCAGACCAGGAGTCGCAAGCTGCGGGGTTCCTGG 34584 30 100.0 35 NNNNNNNNNN .............................. CGAGGGACGCGAACCAGCGTATTATTTCCGTTGGT 34649 30 100.0 36 NNNNNNNNNN .............................. CCAGATCCAGCAGCTTGTAGGCTGCGTCCGGGTCGA 34715 30 100.0 36 NNNNNNNNNN .............................. GTGTGGTGGACCTTGCCTTCCGCAAGCGTGTGCGGG 34781 30 100.0 36 NNNNNNNNNN .............................. GAAACCCCTGCTGCTCGAAACGCTTGTAGTAGCCGA 34847 30 100.0 36 NNNNNNNNNN .............................. CGTGAACGTTGTAGCTAATCATGGATGAGCCTCCCT 34913 30 100.0 35 NNNNNNNNNN .....C........................ TTGTGGTACAGTCATGGCTGGTAGGGGTTCGTGAT 34978 30 100.0 36 NNNNNNNNNN .............................. TTTGCCGTCCATGTCGTTGGCTGCAGACGGCAGACG 35044 30 100.0 36 NNNNNNNNNN .............................. TTTGCCGTCCATGTCGTTGGCTGCAGACGGCAGACG 35110 30 100.0 38 NNNNNNNNNN .............................. GCTGCTGACAGCGGCGCAGTGGGATGCACGGGATGCAG 35178 30 100.0 35 NNNNNNNNNN .............................. GCTGGAGGAGACGTTTGAGGTGAACCAGTGGTTGC 35243 30 100.0 36 NNNNNNNNNN .............................. ACTATACCTCTTTTTTGCTCATCCCCGCCCTTCCAC 35309 30 100.0 37 NNNNNNNNNN .............................. GATCGAGAACGCGCGGATGCTCGAGCAGGTGGGAGCG 35376 30 100.0 37 NNNNNNNNNN .............................. CGAAAGAGCAGACGGAAGGACCAAGCGCAATGGGACG 35443 30 100.0 39 NNNNNNNNNN .............................. TTCGGCGGTGGGTCTGGGTACTGGGTGCGTGGCTGGCAG 35512 30 100.0 37 NNNNNNNNNN .............................. CAGCGCTTCATCATGCTCGCGCTGCAGCCAGTCCAGG 35579 30 100.0 36 NNNNNNNNNN ...........................G.. CTTCCTCCAACATGAGGATCGCCGCGATGCTTAGCG 35645 30 100.0 37 NNNNNNNNNN .............................. CTGCGCGTCTTCGTAGGTCAACATGTAGTCGGTATAT 35712 30 100.0 37 NNNNNNNNNN .............................. AGGACGGTGGTCAGCCGCCCTCAGGGCGAGGGAGTGG 35779 30 100.0 36 NNNNNNNNNN .............................. TCACAGGCGATCACCGCCACCTCGATGCCGAGCTGG 35845 30 100.0 36 NNNNNNNNNN .............................. TCGTTCCTCGCGGTACGACCGACGGTACCGGGCCGG 35911 30 100.0 37 NNNNNNNNNN .............................. AGACATGACTCGTACTGCGTACTGCTCCCCTGGGTGC 35978 30 100.0 36 NNNNNNNNNN .............................. CAACGAGGGCGAGCGCGACGCGAGCGACGTCGCGTG 36044 30 100.0 36 NNNNNNNNNN .............................. CGGCGTACGGGGCACGGGTCGCAGCGATCGTCGCGG 36110 30 100.0 34 NNNNNNNNNN .............................. GCAGCTCGGGGCAGATTCACTGCCCAGCTTGCCC 36174 30 100.0 36 NNNNNNNNNN .............................. GGAGTCAGGGGGCCAGGTTCCAGGCCCTAGAGCCCA 36240 30 100.0 1 NNNNNNNNNN ..C...G...C....C...C.....A.... NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 76 30 36 GTTTCGACAGTACCTATGAGGGCTTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [31.7-30.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [413,592] Score: 0/0.18 # # Final direction: F [0.78,0 Confidence: HIGH] >NC_011963 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1994975 32 100.0 39 NNNNNNNNNN ................................ ACGTCAACGTCAACTTTGATGGCGTCTGAGATCGATCCG 1995046 32 100.0 35 NNNNNNNNNN ................................ AAGGCCATGCCGAGAGATGACCAGCGCGCCTTCAT 1995113 32 100.0 36 NNNNNNNNNN ................................ GGGCTGATCTCGACCCCGGGCGGGATCACCGGAACG 1995181 32 100.0 33 NNNNNNNNNN ................................ CATGTGCAGGGCGAACGCGGTGACGCCCCACGC 1995246 32 100.0 34 NNNNNNNNNN ................................ CGCCCGGCGGCGTTGTAGAGCGCGCCGACGCCGC 1995312 32 100.0 36 NNNNNNNNNN ................................ CCCCTCGTCGCCCGCCGGGTGGACGTCGACAAGATG 1995380 32 100.0 35 NNNNNNNNNN ................................ CGTGGCGGGAGCGCGCATCAACCCACGTGGGGCGT 1995447 32 100.0 35 NNNNNNNNNN ................................ ATCAGGCGGATGTTGGTCAGCATGTCCTCGATGGC 1995514 32 100.0 36 NNNNNNNNNN ................................ ACGCACAAGGAATGGCCTGGCGACGAGGCGAAGCCG 1995582 32 100.0 36 NNNNNNNNNN ................................ TGAAGATGCATGATGACTGAGGAGAAAACGACCATG 1995650 32 100.0 33 NNNNNNNNNN ................................ GTCACCGATGGCCCCATGGGCCGTGTCGCCCGG 1995715 32 100.0 33 NNNNNNNNNN ................................ CGTGGTCTACGAGGCGCCCCTCGATCCGCGCTG 1995780 32 100.0 33 NNNNNNNNNN ................................ TCGGCCACCGGCGAGACGATCACATTCCCGATG 1995845 32 100.0 35 NNNNNNNNNN ................................ TCATCGGATCTCTTCCTGATGCCGCGAAAAGCCAC 1995912 32 100.0 35 NNNNNNNNNN ................................ CCAATCGTCCACGCCCAGCGCCCAGGCCAGCCACG 1995979 32 100.0 35 NNNNNNNNNN ................................ CTCGGGCATTAGGAGCCAATTCGGAACGATTTTAC 1996046 32 100.0 34 NNNNNNNNNN ...........T.................... ATCGTGTTGATAATGGCCTGCACCGTCTGGCCGG 1996112 32 100.0 34 NNNNNNNNNN ................................ ACGCTGGGCCCGGCGTCCGAGCCGCTGCAGGGAC 1996178 32 100.0 34 NNNNNNNNNN ................................ GGAAACATGCCCGATCATGTCGGACGTGATGAAA 1996244 32 100.0 32 NNNNNNNNNN ................................ ACACAAAAAACAAAAGCCGTCATGCCGATAGG 1996308 32 100.0 34 NNNNNNNNNN ................................ TTACACCTGCTCGACTGGCAGCACCGGTAAGATT 1996374 32 100.0 34 NNNNNNNNNN ................................ CCCGTGCGAACCTCAAGCCAGGAACTCGGAACGG 1996440 32 100.0 35 NNNNNNNNNN ................................ CGGGGCGATGGGAGCAAGCGGCGTGGCCTCGTCGC 1996507 32 100.0 34 NNNNNNNNNN ................................ ACAGGTGGGACTATCTCATCGCCCCGCCCCGCAC 1996573 32 100.0 34 NNNNNNNNNN ................................ AACCAGGTGGCGGTCGGCAATGCGCGGGTCCGCC 1996639 32 100.0 36 NNNNNNNNNN ................................ CCCACCAGAACTGGTACTTCTTGCCACTTCTATCGC 1996707 32 100.0 34 NNNNNNNNNN ................................ GTCGCGGGCCAGAAACACAACTGCGCCCTCGTGC 1996773 32 100.0 35 NNNNNNNNNN ................................ ATCCCGACAATTCGCGCGGAATCGCAGGACGTGGC 1996840 32 100.0 35 NNNNNNNNNN ................................ TCGCTCGGCACGTAGCGGCCGGCGTAGGCCGCCGC 1996907 32 100.0 32 NNNNNNNNNN ..................CGTG.ATCGA..C. AGTAGGTCTGGTCGGCCTGCTCAAGCGTCATG 1996971 32 100.0 1 NNNNNNNNNN ..T................A.GTCTA.C.TCT NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 31 32 34 GTCGCCCCTCACGCGGGGGCGTGGATCGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [182,207] Score: 0/0.18 # # Final direction: F [1.42,0 Confidence: HIGH] >NC_011969 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 3457365 23 100.0 49 NNNNNNNNNN .....CG..ACC..ACC..GG.. TAATACGGGGGCTACTGGTGCTACTGGACCTCAAGGTAATACGGGGGCT 3457437 23 100.0 49 NNNNNNNNNN .....TG..ACC..ACC..G... TAACACGGGCGCTACTGGTGCCACTGGACCTCAAGGTAACACGGGCGCT 3457509 23 100.0 49 NNNNNNNNNN .....TG.CACT..ACC...... TAACACGGGCGCTACTGGCGCCACTGGACCTCAAGGTAACACAGGCGCT 3457581 23 100.0 49 NNNNNNNNNN .....TG..ACT..ACC...... TAACACGGGCGCTACTGGTGCTACCGGACCTCGAGGTAACACGGGCGCT 3457653 23 100.0 31 NNNNNNNNNN .....CG.CACT..ACC...... TAACACAGGCGCTACTGGTGCTACCGGCGCT 3457707 23 100.0 22 NNNNNNNNNN ..............ACC...... GCCGGCGGGTGCTACTGGTGCC 3457752 23 100.0 22 NNNNNNNNNN ....................... TAATACAGGTGCTACTGGTGCC 3457797 23 100.0 22 NNNNNNNNNN ....................... TAATACAGGTGCTACTGGTGCC 3457842 23 100.0 22 NNNNNNNNNN ....................... TAATACAGGTGCTACTGGTGCC 3457887 23 100.0 22 NNNNNNNNNN ....................... TAATACAGGTGCTACTGGTGCC 3457932 23 100.0 22 NNNNNNNNNN ....................... TAATACAGGTGCTACTGGTGCC 3457977 23 100.0 22 NNNNNNNNNN ....................... TAATACAGGTGCTACTGGTGCC 3458022 23 100.0 22 NNNNNNNNNN ....................... TAATACAGGTGCTACTGGTGCC 3458067 23 100.0 22 NNNNNNNNNN ....................... TAATACAGGTGCTACTGGTGCC 3458112 23 100.0 23 NNNNNNNNNN ....................... GTCCGGCGGGTGCTACCGGCGCT 3458158 23 100.0 22 NNNNNNNNNN ....................... TAACACAGGTGCTACTGGTGCC 3458203 23 100.0 22 NNNNNNNNNN ....................... TAACACAGGTGCTACCGGCGCT 3458248 23 100.0 22 NNNNNNNNNN ..............TA....... ACCAGCGGGTGCTACCGGCGCT 3458293 23 100.0 22 NNNNNNNNNN ..............TA....... ACCAGCGGGTGCTACCGGCGCT 3458338 23 100.0 22 NNNNNNNNNN ..............TA....... ACCAGCGGGTGCTACCGGCGCT 3458383 23 100.0 22 NNNNNNNNNN ..............TA....... ACCAGCGGGTGCTACCGGCGCT 3458428 23 100.0 22 NNNNNNNNNN ..............TA....... ACCAGCGGGTGCTACCGGCGCT 3458473 23 100.0 22 NNNNNNNNNN ..............TA....... ACCAGCGGGTGCTACCGGCGCT 3458518 23 100.0 22 NNNNNNNNNN ....................... TAACACAGGTGCTACCGGCGCT 3458563 23 100.0 22 NNNNNNNNNN ..............TAC...... ACCGGCGGGTGCTACCGGCGCT 3458608 23 100.0 22 NNNNNNNNNN ..............TA....... ACCGGCGGGCGCTACTGGTGCC 3458653 23 100.0 22 NNNNNNNNNN ....................... TAACACAGGTGCTACTGGTGCC 3458698 23 100.0 22 NNNNNNNNNN ....................... TAACACGGGCGCTACCGGCGCT 3458743 23 100.0 22 NNNNNNNNNN ...........G..T.C...... GCCGGCGGGTGCTACCGGTGCT 3458788 23 100.0 22 NNNNNNNNNN ....................... TAATACAGGTGCTACTGGTGCT 3458833 23 100.0 22 NNNNNNNNNN ....................... TAATACAGGTGCTACTGGTGCT 3458878 23 100.0 22 NNNNNNNNNN ..C...........TA....... ACCGGCGGGTGCTACTGGTGCT 3458923 23 100.0 22 NNNNNNNNNN ..............T........ TAACACAGGTGCTACTGGTGCC 3458968 23 100.0 22 NNNNNNNNNN ..............T.C...... ACCGGCGGGTGCTACCGGCGCT 3459013 23 100.0 31 NNNNNNNNNN ....................... TAACACAGGTGCTACTGGTGCTACCGGCGCT 3459067 23 100.0 1 NNNNNNNNNN ..............TAACACG.. NNNNNNNNNN ========== ====== ====== ====== ========== ======================= 36 23 25 ACTGGACCTCAAGGCGTTCAAGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.20,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [48-21] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [43.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [628,920] Score: 0/0.18 # # Final direction: R [0.64,0.78 Confidence: LOW] >NC_011993 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 877323 28 100.0 32 TAGTATTTGA ............................ AGCAGCTTTCCAGCGAGCGCGGTTAACTCACT 877383 28 100.0 32 TTAACTCACT ............................ AAAACGGCGGGTTTTTTACGCGTGTGGCTGCA 877443 28 100.0 32 TGTGGCTGCA ............................ GTTAACCGTTTCACACTTAACACTATGAACCG 877503 28 100.0 32 CTATGAACCG ............................ CTACAGCAACTGATGCAACGGTAAGCGCGATC 877563 28 100.0 32 AAGCGCGATC ............................ AGCAGCGGTGGCGAACCGCGCGTTGTTGATTT 877623 28 100.0 32 TTGTTGATTT ............................ AGAACTCGAAATTTATCGCGGGACTTTTCAGC 877683 28 100.0 32 ACTTTTCAGC ............................ AGGCTGCTGGCGCTCTCGTTGTTAACGGCAGC 877743 28 100.0 32 TAACGGCAGC ............................ GTTCCACGCGGATATCTGTAATTTCCAGCAAA 877803 28 100.0 TTCCAGCAAA ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT ========== ====== ====== ====== ========== ============================ 9 28 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [214,234] Score: 0/0.18 # # Final direction: F [1.51,0 Confidence: HIGH] >NC_011993 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 886950 28 100.0 32 NNNNNNNNNN ............................ TGAAAGTTGACGCCAGCGGCGACCCGCGTCAC 887010 28 100.0 32 NNNNNNNNNN ............................ AAGGCAAGTGATGGCGAAATTACCCGCGCAAT 887070 28 100.0 32 NNNNNNNNNN ............................ AAATTGGGGACACTTTCTTCTACCTCTTTTGT 887130 28 100.0 32 NNNNNNNNNN ............................ TCAATGCTGCTAAACGCGCACATGAAGAGTCA 887190 28 100.0 32 NNNNNNNNNN ............................ GCGCACGGCGTGGCGACAGAGAGCACGCCCGC 887250 28 100.0 32 NNNNNNNNNN ............................ AGTTCGGCATGAGCAGCTCCTCTGTAGTCAGA 887310 28 100.0 32 NNNNNNNNNN ............................ AGCCAAAATAATGCGTCGCTTTCTGACATTTT 887370 28 100.0 32 NNNNNNNNNN ............................ TCGAGCGTACCAGGTTTACTGTCGTCATATAC 887430 28 100.0 32 NNNNNNNNNN ............................ ACAGAACAGGCGAAAGAAAGGGTACGCAGTAA 887490 28 100.0 33 NNNNNNNNNN ............................ TGGATTCCAAACCGCCCACCAACAAAAACAGGT 887551 28 100.0 32 NNNNNNNNNN ............................ GATACGATCGAATTTAGTCACTGAATACCCCC 887611 28 100.0 32 NNNNNNNNNN ............................ GGGTTGCGCAATGGGCTGGCCGACGAACGCGG 887671 28 100.0 32 NNNNNNNNNN ............................ AGGTCGTAAACCCCATTTTCAAAACCAATCAG 887731 28 100.0 32 NNNNNNNNNN ............................ TGTGGCGCTGATGCGTCTGGGCGTCTTTGTAC 887791 28 100.0 32 NNNNNNNNNN ............................ GCGCGCAGTGCCTGATAATCAATTTTGCTCAT 887851 28 100.0 32 NNNNNNNNNN ............................ AGTTCGCGGCAGACATACACGCCGGGAGTTTT 887911 28 100.0 33 NNNNNNNNNN ............................ GTTCGACGATTGAGTCCGCCGCTGTTGTTTGAT 887972 28 100.0 32 NNNNNNNNNN ............................ CGGCGGACCACTCATCATCGTATAAATCTTTC 888032 28 100.0 32 NNNNNNNNNN ............................ GCAAACGGAATTAGCAGCAGCATGATCAAAGA 888092 28 100.0 32 NNNNNNNNNN ............................ GACGAATGCCGCACACCAGGGCGTCTCGTCGT 888152 28 100.0 32 NNNNNNNNNN ............................ CTGGAGGCGCTCACACTCACGCGGAGTGAGAC 888212 28 100.0 32 NNNNNNNNNN ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 888272 28 100.0 1 NNNNNNNNNN ....................TC.TC... NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 23 28 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [541,114] Score: 0.18/0.18 # # Final direction: F [2.1,0 Confidence: HIGH] >NC_011978 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1152061 30 100.0 36 AATCCATCGG .............................. GAGAATCAGATATACCCTGTGAAGGCATATGTGAGC 1152127 30 100.0 37 ATATGTGAGC .............................. CTCCTATTCTTGAGGCAAACCTGAGCCTTGCATCTAC 1152194 30 100.0 36 TTGCATCTAC .............................. TATGAGCCCGATTATGACATCTCGGGCATAACGTAA 1152260 30 100.0 36 CATAACGTAA .............................. TTTCGATCCCGGTCAATCTTGTCAACAGCTCCGCCG 1152326 30 100.0 36 AGCTCCGCCG .............................. CGGGAGACAAGGAGCACAAGAAAATCTCGTATCTTG 1152392 30 96.7 TCGTATCTTG ................A............. GAAGTATGAA ========== ====== ====== ====== ========== ============================== 6 30 36 GTTTCAATACTTCCTTTGAGGTATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.20,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [379,74] Score: 0.18/0.18 # # Final direction: R [1.23,4.5 Confidence: MEDIUM] >NC_011978 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 271824 31 100.0 35 AAATCCAACG ............................... CAGGAATTGTTCCAGACGGAGTGGCGGTAGAGACA 271890 31 96.8 35 GGTAGAGACA T.............................. TCCACGTCAAAGCCGTGCATTTTCAAAGCGAGTCT 271956 31 100.0 36 AAGCGAGTCT ............................... GAAAAATTGGTTGGTGTTTCTGATGAAATAATTCTG 272023 31 100.0 AATAATTCTG ............................... TTGTGAGTTCT ========== ====== ====== ====== ========== =============================== 4 31 35 GGTTTCAATACTTCCTTAGAGGTATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.29%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.40,-2.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [378,305] Score: 0/0.18 # # Final direction: R [0.37,4.91 Confidence: HIGH] >NC_011978 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 311394 30 96.7 36 CTAAACAACG .............T................ GATTAGTTTTTACCATGTATTGGTAATCTTGTCAAT 311460 30 100.0 39 TCTTGTCAAT .............................. GGGAGTCCTACGTTGGATATCCACAGACGGCAGAGTACA 311529 30 100.0 37 GCAGAGTACA .............................. GTGGAGAAGGCTTTTATCTCAATGGATATCGTTGGTA 311596 30 100.0 36 ATCGTTGGTA .............................. CGCGAAAGCAAAACTCCACGCCCTCAAAGCGCCTTT 311662 30 100.0 35 AAGCGCCTTT .............................. TCAGTTCGAACACAACCTGGCGACGTTTGTCTCGT 311727 30 100.0 TTTGTCTCGT .............................. CCGTTGGATTT ========== ====== ====== ====== ========== ============================== 6 30 36 GTTTCCATACCTCAAAGGAAGTATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [224,587] Score: 0.18/0.18 # # Final direction: F [4.5,0.96 Confidence: MEDIUM] >NC_011978 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 704816 29 100.0 38 AATCCAACGG ............................. CCGTAGTTCCTCACGGTGCCGGAGCAAACCTCGAACTC 704883 29 100.0 37 CCTCGAACTC ............................. CTGTTTCGTGTAAGTGTGAATCTCAGAACGTTGCCTT 704949 29 100.0 37 ACGTTGCCTT ............................. CTCTTGAGGGGGTGAGGGTTGATCTTCTTTCCACCTC 705015 29 100.0 41 TTTCCACCTC ............................. CAAAGGACACTGTCGTATATGGTAGGACATGACGGCACCGA 705085 29 100.0 36 ACGGCACCGA ............................. CTTTTTCTTTGCGTGAAGTAAGCGTTTGGGAATTCT 705150 29 100.0 TGGGAATTCT ............................. TTGAGCCATG ========== ====== ====== ====== ========== ============================= 6 29 37 GTTTCAATACTTCCTTAGAGGTATGGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.52%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.40,-2.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [66.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [620,146] Score: 0.18/0.18 # # Final direction: R [0.82,4.5 Confidence: HIGH] >NC_011978 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 713422 29 100.0 38 NNNNNNNNNN ............................. GCACAAATGTGTGTGTGTCGGCGTTTTTGTGGCGCCAG 713489 29 100.0 36 NNNNNNNNNN ............................. GAAACTGCCCACGCCGTACCAGAGCGTTGGCGCCAG 713554 29 100.0 36 NNNNNNNNNN ............................. GGGGATTACTCCCCGCTAAACTCTACCGCTATCCAG 713619 29 100.0 36 NNNNNNNNNN ............................. AAGCCATCAGGACAGAAATAGACACGATAGCGCTCA 713684 29 100.0 38 NNNNNNNNNN ............................. ATGACATTTATAAACTATTTCATTCCAGGGGATTACTC 713751 29 100.0 37 NNNNNNNNNN ............................. AGCTCTTTCGATGCGACAGTCGGCGAGTATGGAGTGT 713817 29 100.0 36 NNNNNNNNNN ............................. CTCTACCCTCAATTAAGATCGACTGTCACATATCAA 713882 29 100.0 37 NNNNNNNNNN ............................. TTGTAACCAGCCACGGCGATCTATCTGCCCTGTGAAA 713948 29 100.0 37 NNNNNNNNNN ............................. CAATCTAGAAGGAGGGGATTGAGATGGTCAAGTATGA 714014 29 100.0 36 NNNNNNNNNN ............................. ATTCACAACTATATCTATGTGTTCGAGTGTAATCTC 714079 29 100.0 38 NNNNNNNNNN ............................. AAGATAAGAATCTTCACCTTAAATCTCCTCCCACACCA 714146 29 100.0 36 NNNNNNNNNN ............................. GGCGACAGAAGCCGCCAGTGTCGTTTGCAAACTGCG 714211 29 100.0 36 NNNNNNNNNN ............................. GTAGGGAAGCTAGAGGTGGTAGGATGAGTGAATGGA 714276 29 100.0 38 NNNNNNNNNN ............................. CAATCTTCTCTAACTCATTGGCGTTCTGAAAGATTTCA 714343 29 100.0 36 NNNNNNNNNN ............................. ATCTAGATAGAGGACATTTATAGGGTCTCGTGTTTT 714408 29 100.0 37 NNNNNNNNNN ............................. CGTTCTGCAGGGGGTCTTTTTCAATCTCCCTGTCCAG 714474 29 100.0 39 NNNNNNNNNN ............................. CTATATGGACAGACTCCTATATCCGCTTCCTGTATGAAA 714542 29 100.0 38 NNNNNNNNNN ............................. TTCCTCCCTTACCTCATCGTGATGCGCACACCTTTCTG 714609 29 100.0 36 NNNNNNNNNN ............................. TTTTCTTGAAGTCTTCCTCTACTCTTTTTTTATATC 714674 29 100.0 36 NNNNNNNNNN ............................. TGATAAAAAAGGAGTTCGTTGAAAAGCTGATGAAAA 714739 29 100.0 37 NNNNNNNNNN ............................. CTTTACCTCGTGATGAAGGCGGGGGTAGGTATATCCG 714805 29 100.0 36 NNNNNNNNNN ............................. TCTATACAATTTTATCTCTTTGAGGGTGTTGGCGCA 714870 29 100.0 36 NNNNNNNNNN ............................. TGTCTTCTCTCCTATCCGCCTGCCGTTTTTGGGAAT 714935 29 100.0 38 NNNNNNNNNN ............................. TGCTATCACTTCCTTACCTCTGTATCTCGTACTCGATC 715002 29 100.0 37 NNNNNNNNNN ............................. CTTGAGAAGGCTGCTGCACAGGCTGACGCATGGATCG 715068 29 100.0 36 NNNNNNNNNN ............................. ATGGTCGGGTCATTCCCCTCCTTGTCTCTGAACAAC 715133 29 100.0 36 NNNNNNNNNN ............................. CAGAACTCCTTCCACCTGTTCACCGCTGCTTTGAAC 715198 29 100.0 36 NNNNNNNNNN ............................. TGCGGTGTGATAGGTCACACTCCCACCTCACACAAC 715263 29 100.0 1 NNNNNNNNNN .........................AGTA NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 29 29 36 GTTTTTATCTTCCTAAGAGGAATATGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.97%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-3.40,-3.40] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [79,210] Score: 0.18/0.18 # # Final direction: F [0.41,0.18 Confidence: MEDIUM] >NC_011978 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 75181 30 93.3 39 CCGGTGGATT .............A.......T........ GTGCTGTAATAGGATTTTTCCTCAGAAAGAAACTTTTTG 75250 30 93.3 37 AAACTTTTTG .............A.......T........ CAAAAGAGACTTTCCCCAACCACTCTCCAAACCAGAA 75317 30 100.0 36 CAAACCAGAA .............................. TTGGAAACTTGGGAAGGAGGAGTCTTGTTTGGTTTA 75383 30 100.0 40 GTTTGGTTTA .............................. CAAGAACGAATCGATGCCGTATTCGTTCCGTGTCAGAACG 75453 30 100.0 TGTCAGAACG .............................. CGTTGGATTTC ========== ====== ====== ====== ========== ============================== 5 30 38 GTTTCCATACCTCTAAGGAAGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.90,-2.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [58.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [308,620] Score: 0.18/0.18 # # Final direction: F [4.5,0.82 Confidence: HIGH] >NC_011979 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3765800 37 89.2 34 CCGCTGGAGG --...........T........G.............. AATTACAAGGAGGAGCGGAGAGATGGAACCTATT 3765871 37 100.0 34 GGAACCTATT ..................................... GTGGTAGTTTCAAAGACATGGTGTTACCCCCTGA 3765942 37 100.0 36 TACCCCCTGA ..................................... GAGAGAGCCAGCCGGGGGCGTGACAGCAGGCACAGT 3766015 37 100.0 33 CAGGCACAGT ..................................... GTCCCCGATTTTGCTGACACTGACAAGTAGATA 3766085 37 100.0 34 CAAGTAGATA ..................................... TAAGGGTATTATTACCAAGGCTCTATCCGATGTA 3766156 37 100.0 36 ATCCGATGTA ..................................... ACAAGGCAGCCGATGATCCGAACTCCCAGCACACCA 3766229 37 100.0 34 CAGCACACCA ..................................... TGCAGAAGAGTTCCTCGTCGGCGTGTTCTTTGTA 3766300 37 100.0 34 GTTCTTTGTA ..................................... CCTTGTTATCGCCGCCGTAGTTGGCGTTGGTGAT 3766371 37 100.0 34 CGTTGGTGAT ..................................... AGTTCCCTATGCTCCATGCTGTGCTGGTGGATCT 3766442 37 100.0 34 TGGTGGATCT ..................................... AATGGACATCAACCGCACTTAAAGCATCGACGGT 3766513 37 100.0 35 CATCGACGGT ..................................... ATGATGTGCCTCCTGCCCGTCGCCGGGTGTGATGT 3766585 37 100.0 34 GGTGTGATGT ..................................... GCTGACGCCGAATTTGCCGTCGCGGTAGGTTTTG 3766656 37 100.0 35 GTAGGTTTTG ..................................... TTCGGTGATTGCACCGTTGAAGGTATATCCTGCCG 3766728 37 100.0 35 TATCCTGCCG ..................................... ATGAGGGCGGCCCGGCTGGCGCTGTAGGATGCGGT 3766800 37 100.0 34 AGGATGCGGT ..................................... CTTTGATAGCAAAGGGATATCCGAACAAATAGTG 3766871 37 100.0 35 ACAAATAGTG ..................................... GAACAAAAAGGGATCATCCAAAAGGGGCATGGCTT 3766943 37 100.0 36 GGCATGGCTT ..................................... GCGCTGGAGGTCTGCGCGCTGGCCGCCTTCCTTACA 3767016 37 100.0 35 CTTCCTTACA ..................................... GCCCACGCCAAGGCCTTCACCGTCGCCAAGGTGAT 3767088 37 100.0 35 CCAAGGTGAT ..................................... TTCGGTGATTGCACCGTTGAAGGTATATCCTGCCG 3767160 37 100.0 33 TATCCTGCCG ..................................... ATGGTCCGCCATTTGCTGGGAGGTGACGAAATT 3767230 37 100.0 34 TGACGAAATT ..................................... ATGATAAATCACCTCCGTAGATAACCACTCGCCG 3767301 37 100.0 40 CCACTCGCCG ..................................... CTACCGTACCGTGGGCCGGCAGAAATCACCTGACCCAGGG 3767378 37 97.3 35 TGACCCAGGG ..............A...................... GTAGTTTTCCCGCCGCTTGTAGATATCGACCTCTT 3767450 37 100.0 35 TCGACCTCTT ..................................... CAGGCTCAGAAGCTCATTGGCACTGCCGGCATTGA 3767522 37 100.0 36 CCGGCATTGA ..................................... CGGCGGTGCCGGACGTACCGCTCCTAATACTGACCT 3767595 37 100.0 33 ATACTGACCT ..................................... CCCCAAGCCCACGCATGCCCGGTACGTTGCAAC 3767665 37 100.0 ACGTTGCAAC ..................................... CGCCCCCTCT ========== ====== ====== ====== ========== ===================================== 27 37 34 GTTTCAATCCTCGCCCGCCTTTACAGACGGGCGCTAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [6,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-9.00,-15.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [36.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [45,178] Score: 0.18/0.18 # # Final direction: R [0,6.1 Confidence: HIGH] >NC_011992 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 61495 36 100.0 30 NNNNNNNNNN ..CA................................ ACGCCCATATCGGCCCACTGAGCGATATTC 61561 36 100.0 30 NNNNNNNNNN .................................... CGGCAGGGTTTGGGGGAGGCGATTAAATTT 61627 36 100.0 30 NNNNNNNNNN .................................... CAGCTATGCAGCGCAGGGCATATGCTGCAT 61693 36 100.0 30 NNNNNNNNNN .................................... GAAAGCAGGTCCGGCAAGCTACGCGCGACA 61759 36 100.0 30 NNNNNNNNNN .................................... GAAAGCAGGTCCGGCAAGCTACGCGCGACA 61825 36 100.0 30 NNNNNNNNNN .................................... ATCAGCCTGAGCCTTTGCAGAGGCTTCCTC 61891 36 100.0 30 NNNNNNNNNN .................................... CATTCCCCCCGTGGCTCGTAATTTCGCATT 61957 36 100.0 30 NNNNNNNNNN .................................... TCGATGTAAGTCACCCCTGCCTTTTCTAGC 62023 36 100.0 30 NNNNNNNNNN .................................... TGAGCAGTTCGTCTACTGCGCGGAAGCCAG 62089 36 100.0 30 NNNNNNNNNN .................................... ATAACCACTTGGATGGCCTGCGACGGCGGC 62155 36 100.0 30 NNNNNNNNNN .................................... GGATCGCCGTGGGTAATGCGAACGACGTTA 62221 36 100.0 30 NNNNNNNNNN .................................... AACACGTTCCCAGCGGCCTTTTGGGCGTCC 62287 36 100.0 30 NNNNNNNNNN .................................... GGCTACGCCCGGCGCGAAGAGGCCATCGCT 62353 36 100.0 30 NNNNNNNNNN .................................... CTGGACGGAGGGACAACAGCATGAGCGAGA 62419 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 15 36 30 GTTGTAGCTCCCTCTCTCACCCCGGATAGCTACACT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.10,-5.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [271,66] Score: 0.18/0.18 # # Final direction: R [0.18,1.15 Confidence: HIGH] >NC_012030 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 333645 37 100.0 36 TTCACCCCCT ..................................... TTACCCTCAAGGTACTATGTGCTGTGCTGCACTGTT 333718 37 100.0 37 CTGCACTGTT ..................................... GACATCCACGGTGTTAACCCCCGGTGTTGTACCTGTG 333792 37 100.0 36 TGTACCTGTG ..................................... AGAACCGCGCGTCGGGGACGTCGAAACAGGCGAACG 333865 37 100.0 35 CAGGCGAACG ..................................... AAAGTCGCTGAGGTCGCCCTCGACGGCTTCGAGGT 333937 37 100.0 35 GCTTCGAGGT ..................................... ATCCACAGATCCGGACCCTCAAAGGGATACCCCCC 334009 37 100.0 33 GATACCCCCC ..................................... AATTGTTCGAACTCGACCGCGGTGTTCAAGCGC 334079 37 100.0 36 GTTCAAGCGC ..................................... CAGATCGGAACAGAACGGTAAGTAGCGGTTCGCTGT 334152 37 100.0 35 GGTTCGCTGT ..................................... CAAGAAAGGGTCACAGTCGTGTTTTAGCACAGTCG 334224 37 100.0 36 AGCACAGTCG ..................................... CTGAAGGCCGGGCGATACGAGTGCGGACACTGTCAG 334297 37 100.0 31 ACACTGTCAG ..................................... CGGGACGAAGACCATCCCACCGATCTCGGAG 334365 37 100.0 35 GATCTCGGAG ..................................... CGTCCGATGGACTCCGTGACGGGAGTGGGAGTGTC 334437 37 100.0 36 TGGGAGTGTC ..................................... CGTGTCGACCTCTCGAACGTCGAGCTCGGAGATATT 334510 37 100.0 36 CGGAGATATT ..................................... CAGATCGGAACAGAACGGTAAGTAGCGGTTCGCTGT 334583 37 100.0 35 GGTTCGCTGT ..................................... ATATTGTCGATGTATTGCGCCGAATCGGTTGGGAT 334655 37 100.0 35 CGGTTGGGAT ..................................... CTGCTTGAAGTGCCGAACCACTTCTAAAACAATCC 334727 37 100.0 32 AAAACAATCC ..................................... CATGAGGGTGAGACAGTGGGGGCCAACCTCAC 334796 37 100.0 34 CCAACCTCAC ..................................... AGCGTGGTTCCGAAGTCACCGAGCTCGTCCAAGT 334867 37 100.0 36 TCGTCCAAGT ..................................... ATCAGTTTTGGATACCTATAGGAATAGGTTAGTTAG 334940 37 100.0 36 GGTTAGTTAG ..................................... GCAGCTACAGGGTGGGTGGTGACAAGCCAAAAAAAA 335013 37 100.0 33 CCAAAAAAAA ..................................... CAATCTTCGGGAGTGCCGAATGGGGTTATCCAG 335083 37 100.0 35 GGTTATCCAG ..................................... CTAACACAGGGGGCTGCGATGTTGGTGGTTTTGGT 335155 37 100.0 35 TGGTTTTGGT ..................................... GCCAAAGGGGATCGTCTACGCGGAACACGAACCCG 335227 37 100.0 34 CACGAACCCG ..................................... GGGCAGCGTGACCCCCGTCTCGCCGCTAAACGAC 335298 37 100.0 36 GCTAAACGAC ..................................... AAGCAACCCGACACGTTGACGAAGAGTAAGTAGCGG 335371 37 100.0 34 TAAGTAGCGG ..................................... TTGCAGACACAGATTGTCTCACCATTGAAGAGAT 335442 37 100.0 36 TTGAAGAGAT ..................................... TTACCCTCAAGGTACTATGTGCTGTGCTGCACTGTT 335515 37 100.0 39 CTGCACTGTT ..................................... TTCCGTCGGGGGTTTCCTCTCCGGGGTGTTCGATACCTG 335591 37 100.0 37 TCGATACCTG ..................................... GACATCCACGGTGTTAACCCCCGGTGTTGTACCTGTG 335665 37 100.0 36 TGTACCTGTG ..................................... AGAACCGCGCGTCGGGGACGTCGAAACAGGCGAACG 335738 37 100.0 35 CAGGCGAACG ..................................... AAAGTCGCTGAGGTCGCCCTCGACGGCTTCGAGGT 335810 37 100.0 35 GCTTCGAGGT ..................................... ATCCACAGATCCGGACCCTCAAAGGGATACCCCCC 335882 37 100.0 33 GATACCCCCC ..................................... AATTGTTCGAACTCGACCGCGGTGTTCAAGCGC 335952 37 100.0 36 GTTCAAGCGC ..................................... CAGATCGGAACAGAACGGTAAGTAGCGGTTCGCTGT 336025 37 100.0 35 GGTTCGCTGT ..................................... CAAGAAAGGGTCACAGTCGTGTTTTAGCACAGTCG 336097 37 100.0 36 AGCACAGTCG ..................................... CTGAAGGCCGGGCGATACGAGTGCGGACACTGTCAG 336170 37 100.0 35 ACACTGTCAG ..................................... AGCCCGTCACCATCAAAATGCCTGTTGATACTAAT 336242 37 100.0 36 TGATACTAAT ..................................... TTCATCGTCGTCGACCACTCGTCGCCAAGAACGCAC 336315 37 100.0 34 AAGAACGCAC ..................................... CGAACAACGGCTACCTTCACATTCACATTGCGGT 336386 37 100.0 35 ACATTGCGGT ..................................... AGCGATTCAACGAGTTTGTAGAGTCCGAGCGTCAT 336458 37 100.0 35 CGAGCGTCAT ..................................... CACTGTAGGCGGCCACTCCCCCACTTTGATCGCCG 336530 37 100.0 38 TTGATCGCCG ..................................... GTGTTGTAGCCGGAGAGAATCGAATACTGTTCGATGAA 336605 37 100.0 34 GTTCGATGAA ..................................... TACTGTTTGTCCGCGTAATCCGGATCGAAGCGGT 336676 37 100.0 36 TCGAAGCGGT ..................................... CGCTGCTCATCGGCTACGAACCCGAAGTACCGCGAT 336749 37 100.0 37 GTACCGCGAT ..................................... ATATCGCACAGGTCACCGGATACAAGAAGGATTCACG 336823 37 100.0 33 AGGATTCACG ..................................... GAAGCAGGGGCTTGCCCCTGACCCGACCGGCGG 336893 37 100.0 36 CGACCGGCGG ..................................... TGTCCGTTTTGGACGGGCGAGCCAGCATACTGTGAT 336966 37 100.0 35 ATACTGTGAT ..................................... ACCTTTTGAGGTCCAGCGAGTAGAATATTCTTTGG 337038 37 100.0 35 TATTCTTTGG ..................................... CAATATTCACCGACCAGGATGTACACGAACTCCGC 337110 37 100.0 37 CGAACTCCGC ..................................... TCGGTCCTGTGTCATCCATCGGCTGCGGTCAGCGTCT 337184 37 100.0 37 GTCAGCGTCT ..................................... TGGTCTGGTTGTGGTTCGAGACAGTCGCGGTCAGTGT 337258 37 100.0 36 CGGTCAGTGT ..................................... ATTTCGTCGGCCTCGTAGCCGTAGGCGCTCATCACG 337331 37 100.0 36 GCTCATCACG ..................................... GAGGTACTCGACCTCAGATACGTCAGCGCTGTTGAC 337404 37 100.0 39 CGCTGTTGAC ..................................... CTGGGATGACGAGGTTCCGCGCTGCGAGGATCGCGTTGT 337480 37 100.0 34 ATCGCGTTGT ..................................... TGATCTCTAACTCTGGCGAGATCAACCCGTGTTC 337551 37 100.0 34 ACCCGTGTTC ..................................... TAGTACTCTGTCCCGCCGTCGTAGGACGTCAGTC 337622 37 100.0 34 GACGTCAGTC ..................................... GTTCTTTCGAATACGATACAAGAGTAGCGGGCGG 337693 37 100.0 34 TAGCGGGCGG ..................................... TAGTACTCTGTCCCGCCGTCGTAGGACGTCAGTC 337764 37 100.0 37 GACGTCAGTC ..................................... ACGTGGACGTCGGCGTCTGGGATACCTATGGCAGTGC 337838 37 100.0 36 ATGGCAGTGC ..................................... TGTTCTCGTATAGGCTGATTGCCCTGTTCTCATTAA 337911 37 100.0 36 TTCTCATTAA ..................................... TCCAAGGGACCTTCCGAGCCCCAGATCGAGAGACTG 337984 37 100.0 34 CGAGAGACTG ..................................... GCGGACGTATCCGCACCAGTGTCCCATGCTTGTC 338055 37 100.0 36 CATGCTTGTC ..................................... ACCTGGAGTTCGCTTGTTACAGGGGATAACTCTTGG 338128 37 100.0 35 TAACTCTTGG ..................................... CATCCCCGAGAGCGTGAGCGACGCGCTGCCGACCG 338200 37 100.0 36 CTGCCGACCG ..................................... ACATAAGTGTGTGTGTCATTACAGCCAGTGGTGCTG 338273 37 100.0 36 AGTGGTGCTG ..................................... ATTCCGTCAAACGGGAAGACAAATACCAAGAGAGTG 338346 37 100.0 35 CAAGAGAGTG ..................................... GGGATCTCGTCGCCGCGGTCACTGTCGAGTATGAC 338418 37 100.0 38 CGAGTATGAC ..................................... CACGACATAATCAATGACGACTGAACGCGAACGCAGAA 338493 37 100.0 36 GAACGCAGAA ..................................... GCCATGCACCGCCACATCGAACTCGGCGGTCATGGC 338566 37 100.0 36 CGGTCATGGC ..................................... GGACGCCCGAGCCGCTGTGGGACGACGACCGCGGAC 338639 37 100.0 36 GACCGCGGAC ..................................... CGGAATACAGCGGAGCTAGTCCAAACGCTCGGTGAA 338712 37 100.0 38 GCTCGGTGAA ..................................... CACGACATAATCAATGACGACTGAACGCGAACGCAGAA 338787 37 100.0 36 GAACGCAGAA ..................................... GCCATGCACCGCCACATCGAACTCGGCGGTCATGGC 338860 37 100.0 36 CGGTCATGGC ..................................... GGACGCCCGAGCCGCTGTGGGACGACGACCGCGGAC 338933 37 100.0 36 GACCGCGGAC ..................................... CGGAATACAGCGGAGCTAGTCCAAACGCTCGGTGAA 339006 37 100.0 GCTCGGTGAA ..................................... GATCGATTCG ========== ====== ====== ====== ========== ===================================== 75 37 35 GTCGAGACACTCAGAAAACCCAGCACGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [14,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.90,-3.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [55.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [117,478] Score: 0.18/0.18 # # Final direction: F [5.51,0.18 Confidence: HIGH] >NC_012030 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 67425 31 100.0 34 NNNNNNNNNN ............................... ACTGCGACTACCCGATCGAGCGCGGCGCAGTGCT 67490 31 100.0 36 NNNNNNNNNN ............................... TCGCTGTTTTCCTTCGGGCTCGACAAGGAGGTCGTC 67557 31 100.0 36 NNNNNNNNNN ............................... TGGAGCTCATCGGCCAGTTCGTCGGAGACTGAAATG 67624 31 100.0 36 NNNNNNNNNN ............................... TCATCGAACCACCGCCTCAAAGAAGGCGCGACGGCC 67691 31 100.0 36 NNNNNNNNNN ............................... GAGAGAAATGACTAGAGAGGTATGAATCAGCGTGTG 67758 31 100.0 35 NNNNNNNNNN ............................... GGGACGGTCTACGTCGGCAGCGACGATAACAGCCT 67824 31 100.0 37 NNNNNNNNNN ............................... CAGGTGACGCCCGAGGACGTTACAGAGACGCCGATAG 67892 31 100.0 36 NNNNNNNNNN ............................... ACCTGTTCGGGGATAATCGAAAGCACTTCGATTCTC 67959 31 100.0 36 NNNNNNNNNN ............................... TGGTATCTCTTCATCGGTCGTCACCAGCGTAGATCT 68026 31 100.0 36 NNNNNNNNNN ............................... GATTAACTGATTCGGCTCCGATCCGCTGCCTGTTCA 68093 31 100.0 35 NNNNNNNNNN ............................... TCGGTAAGCCCGCTCCGCTCTACTTTTCGTCGTCA 68159 31 100.0 37 NNNNNNNNNN ............................... GCGACGTGAGGGCGTTCTCGATCACCGACACGGCGAA 68227 31 100.0 35 NNNNNNNNNN ............................... AAGCCGCCACCGAGGACATCGTCGACGCTCGTTCG 68293 31 100.0 35 NNNNNNNNNN ............................... TCTCCTTCGTGATCGCAACGATCACAGGTGTAGTC 68359 31 100.0 36 NNNNNNNNNN ............................... TCGTCGCCTTCGCCACCCTCGCCGCGAGGGCTGGGC 68426 31 100.0 35 NNNNNNNNNN ............................... AGCTCGATCTCGACCGGCACGTGGTCGGGAGACTC 68492 31 100.0 35 NNNNNNNNNN ............................... AGTAGGGTCGCCACACCCGCGAAAGCAACGAGCCC 68558 31 100.0 34 NNNNNNNNNN ............................... AAAAACTTATGGGCCAACGATCCGTTAGTTGCTC 68623 31 100.0 34 NNNNNNNNNN ............................... CACACCCCCACCCCACACACACGGACCGTTATTC 68688 31 100.0 33 NNNNNNNNNN ............................... ACGAGCGCGGCGGCTGGAACGAGTCGGGTCATA 68752 31 100.0 38 NNNNNNNNNN ............................... CCTTCCTACGGTGCTGAAACCATGAAATCACTGAAAGA 68821 31 100.0 36 NNNNNNNNNN ............................... CACCAGCGAGGAGCCTATTAGCCCAAAAGAGGGGCC 68888 31 100.0 35 NNNNNNNNNN ............................... TACTGCCGTCTGGTCGCTGGTTGCCAAACCATACT 68954 31 100.0 36 NNNNNNNNNN ............................... CACGCGCTCTTTTGGCCGACCGATAACCTGCCGTAG 69021 31 100.0 36 NNNNNNNNNN ............................... CCGGGCGAACCGCTGTATCCCGGTGAGAATACGATT 69088 31 100.0 36 NNNNNNNNNN ............................... CATGGATCCGTCCTCAAAGCCATCACCAACTACCAC 69155 31 100.0 36 NNNNNNNNNN ............................... CCTATCCTGTTCGAAGAACGTCCGCTGAAGGTCGAG 69222 31 100.0 36 NNNNNNNNNN ............................... GGCGGGCGGCAGGCAATGGCGTCGGTTACGCGACGA 69289 31 100.0 36 NNNNNNNNNN ............................... GTGGTTGTGGATTCGGTCGCCACTCTCGGTCTCGAT 69356 31 100.0 36 NNNNNNNNNN ............................... CTCATCGGGGAGCGATGAGAATTGTGAGTCGTCGAG 69423 31 100.0 35 NNNNNNNNNN ............................... TCGGGGTTGATGAGCATCGCGATGTCGTCGGGCCA 69489 31 100.0 37 NNNNNNNNNN ............................... CGTCCGTCATCGCTTGCTGCTGACGGGCCTTGTGGGA 69557 31 100.0 37 NNNNNNNNNN ............................... ACAGGCCGATCGTGCGGACGTTGTCACGAAGCCGGGT 69625 31 100.0 37 NNNNNNNNNN ............................... GCGGCCACTGACGGCGGCGCAGCGACCGACGAGCCCA 69693 31 100.0 35 NNNNNNNNNN ............................... TTCTCGATGGCGTCTTCCTTGAGGTCGTACTTGAT 69759 31 100.0 37 NNNNNNNNNN ............................... CGTTCACTGAGACGTATTCTGTGGGGGCCTACAGCGT 69827 31 100.0 36 NNNNNNNNNN ............................... TCTTGACAGGGCATACAGACCCATCACCACGAGTGA 69894 31 100.0 37 NNNNNNNNNN ............................... GCTCCAACAGCCCCGGCCGGACGACCGAATCCCACCA 69962 31 100.0 37 NNNNNNNNNN ............................... CGTCCTTGGGAAGCGGGTTGAATGGGAGATCGCGATC 70030 31 100.0 35 NNNNNNNNNN ............................... GCGATCTCCGCGCCGGGCTCGGCGTGGTTGATACT 70096 31 100.0 36 NNNNNNNNNN ............................... GTTCGCGTAGTTGTCCTCGACGATCCAGCGGTCGTC 70163 31 100.0 35 NNNNNNNNNN ............................... CGAGTCTTCGGGTTGCCCGACGAGTCCGACGGGAC 70229 31 100.0 35 NNNNNNNNNN ............................... AACTGGCCGACGAATGGGAGGGCGAACTGCCCGCC 70295 31 100.0 36 NNNNNNNNNN ............................... ATTAACGTTGATACGGACAAAATCGTGAGTGATACT 70362 31 100.0 34 NNNNNNNNNN ............................... CGTCTACCGCCATTCAGACGGGACGGGCGAACCT 70427 31 100.0 35 NNNNNNNNNN ............................... TACTTATAGGTTGTTATAGAGGATTATAACTCATT 70493 31 100.0 35 NNNNNNNNNN ............................... CGTAGGCGTCGATCATCCGAAAATCGCCTCCGGCG 70559 31 100.0 34 NNNNNNNNNN ............................... CCAACCGCTTGGGTTGGGCGTCGCCGCTGTCGTC 70624 31 100.0 35 NNNNNNNNNN ............................... AAGAAGTTCTCGCCGTCGTCCTGCCACAGTGAACA 70690 31 100.0 34 NNNNNNNNNN ............................... CCGGTCCCTCGGCGGTCGAGCAGCTGCAAGCCGA 70755 31 100.0 35 NNNNNNNNNN ............................... TCAAACGCGAGGATGAGTCGACGTCGGAGTTTTTC 70821 31 100.0 35 NNNNNNNNNN ............................... TGGCGAACTCAAGTCACTCCGGCGAAACGGATTCT 70887 31 100.0 35 NNNNNNNNNN ............................... AGTCCGTTCCGGATCTCGATCGTTGCCGTTCCGTG 70953 31 100.0 35 NNNNNNNNNN ............................... GAGGTCACCGTCAACGGGACCAACGGCTCGGACGT 71019 31 100.0 34 NNNNNNNNNN ............................... TCAGCCCAAGACGACGAGGACGGCGAGAGAGACC 71084 31 100.0 35 NNNNNNNNNN ............................... CTCGATCCCCAGCGCCGACGATCTCGGAATCATTG 71150 31 100.0 36 NNNNNNNNNN ............................... TACCAATGCTCGTTTTGGCGATCGCACTCGGAGCCG 71217 31 100.0 36 NNNNNNNNNN ............................... TGATTTCGCTGAGAGTGTCGTCAAACCGACTTAAAT 71284 31 100.0 35 NNNNNNNNNN ............................... GTCGTCGGAATGGGCAACGCGCCGATGAACAACCA 71350 31 100.0 35 NNNNNNNNNN ............................... GACGAATCGAGGTGTGACTGCAGCGGGATGTCGAC 71416 31 100.0 36 NNNNNNNNNN ............................... GCCGGGCGCGACGTCGATCAGCACTCGGCCGATTGT 71483 31 100.0 36 NNNNNNNNNN ............................... CGCCTCGTGATTGAGGCATTCTCCCGCAAGGGCGAG 71550 31 100.0 35 NNNNNNNNNN ............................... TCAGTCGTGGTCGTTTGCTGACCATCCTCACTCGT 71616 31 100.0 36 NNNNNNNNNN ............................... GCCGTCCTCGTCTCGCGGAAACAGCTCTGGGAACTC 71683 31 100.0 37 NNNNNNNNNN ............................... GACGAACTCGAGGAACTCCGTCGAGGACGTGGTAGAC 71751 31 100.0 36 NNNNNNNNNN ............................... CCCGCACCTCCGCGTCCGCCGCGAGAACGTCGAAAA 71818 31 100.0 33 NNNNNNNNNN ............................... GACGGGGATCGTGATCGGCGAGGGGTTCCGGAA 71882 31 100.0 35 NNNNNNNNNN ............................... GTCGACGTCGTGGAGGCGGATCCGGGTCGGTTCCG 71948 31 100.0 36 NNNNNNNNNN ............................... GTTGCCCAGTGTGTTCCGAGTTGCACATCTTGATGT 72015 31 100.0 35 NNNNNNNNNN ............................... ACTGCGATATCGCCCACATTATACGACTCGTCAAG 72081 31 100.0 35 NNNNNNNNNN ............................... AGGGGGCGTTTTCGTGATTGCCGGGCAGACAGGCT 72147 31 100.0 35 NNNNNNNNNN ............................... GATCGCCCGATCTCGTGGAACGGCGCGATCACCCA 72213 31 100.0 35 NNNNNNNNNN ............................... TCGCGGATCGACCCATCGACGTTCCCGTTTTCGTC 72279 31 100.0 34 NNNNNNNNNN ............................... TATCGGCCTCGGTGGCGAGATCCCGCAGTTCGTC 72344 31 100.0 35 NNNNNNNNNN ............................... CACTGAGCTATCAGGTTTTGCATTTGGGTATCAGT 72410 31 100.0 36 NNNNNNNNNN ............................... GTCAGTCAACTCGCGAGCAACCTCGTGGTTCCATTC 72477 31 100.0 34 NNNNNNNNNN ............................... GTCGAGTCTTGGCCTGCCGAGCCGATCCGCACCT 72542 31 100.0 36 NNNNNNNNNN ............................... AGCGTTCTCTCTGCTCGAACTAAGACTAATTGGGAT 72609 31 100.0 34 NNNNNNNNNN ............................... ACCGAGGACGAGGTTGCGGAACTGGCACGTAGTA 72674 31 100.0 36 NNNNNNNNNN ............................... CTGTGGAACCTTAAACGAAGTCTCGAACGCACGCTC 72741 31 100.0 35 NNNNNNNNNN ............................... TTTAGCGGTTAGCTGGGTAAGTGCCAAAAACAACA 72807 31 100.0 37 NNNNNNNNNN ............................... CTTGTGCACGATCCTGCTGGACGTCGGGGTTGGTGAA 72875 31 100.0 36 NNNNNNNNNN ............................... GAGGAATTTGGACGGTGAAATTGCTGAATACAGAAT 72942 31 100.0 36 NNNNNNNNNN ............................... ACGATCAACAACTCGGCAGATCCGACGAACGCGGAA 73009 31 100.0 37 NNNNNNNNNN ............................... CGCCGTCACTGTTCTCGACCATCGTCTCGCCGAGCTG 73077 31 100.0 36 NNNNNNNNNN ............................... GGCCTGTACCCCGCGTTCTAGGTCTTTTAGCTTGGC 73144 31 100.0 35 NNNNNNNNNN ............................... CGCGTGTGTTGATCCCGTCGCTGAACAGAGTGACT 73210 31 100.0 34 NNNNNNNNNN ............................... CATATGTTGATAATCGAGGACGGAAAGGGGGACA 73275 31 100.0 35 NNNNNNNNNN ............................... CGGAACGCCGTCGACGCCACTTCGGCCCCTTGGCC 73341 31 100.0 36 NNNNNNNNNN ............................... GGTGTCGACCAGTTTGACGTTGCTGTAACTGAGATC 73408 31 100.0 37 NNNNNNNNNN ............................... GTGGCGAGTGCCTTAGACGACACCATGCCGTCTGCCC 73476 31 100.0 35 NNNNNNNNNN ............................... TCCGTCTCATCAGCCGGAACGTAGAAGTACGGCTC 73542 31 100.0 36 NNNNNNNNNN ............................... TTGCTGTGCGGTGCGTTGCTGTACTGTTGTGTTACT 73609 31 100.0 36 NNNNNNNNNN ............................... TGGCGAGTGCCTTAGACGACACCATGCCGTCTGCCC 73676 31 100.0 32 NNNNNNNNNN ............................... GCGACGGTCGAGAAGAGCGATTCCTAGATAGT 73739 31 100.0 35 NNNNNNNNNN ............................... TCTGGGTTGATACCTTCAGTAGTAACCCTTCAGTA 73805 31 100.0 35 NNNNNNNNNN ............................... TCGATGTCGTTCTCGACCGGCTGGACGGCGTCGAT 73871 31 100.0 35 NNNNNNNNNN ............................... GACTCCGAGGCCCCGACCGCGTCGGCCCACGCTTG 73937 31 100.0 36 NNNNNNNNNN ............................... CTCACCGCGAGGCTCGTACACACCCTCGTCTGAGTT 74004 31 100.0 35 NNNNNNNNNN ............................... GGCGCTCGGATCGTCGGCAGAACCAACATGTCCTC 74070 31 100.0 34 NNNNNNNNNN ............................... ACGCCGGCAGCTGCGCGGCGTCACCCGAGTCGTC 74135 31 100.0 34 NNNNNNNNNN ............................... GCATTCCCGAGGAAAAGCGGTCGGTTCAACTCAA 74200 31 100.0 37 NNNNNNNNNN ............................... GCGGCCCGACCAACGCCCGAACCTTCGTCGAAGACGC 74268 31 100.0 35 NNNNNNNNNN ............................... GCGACGCCGGCGCCCTCAAGTTCCCACGGATACGG 74334 31 100.0 34 NNNNNNNNNN ............................... TATCTTCGTCTTCGCGACGCTTCCGAACGACTCG 74399 31 100.0 34 NNNNNNNNNN ............................... CCCCACGATTGAGGCACTCTCCCGCAAGGGCGAC 74464 31 100.0 36 NNNNNNNNNN ............................... GCGGAGTCCGACCGCGCCCAGGCCGCCGGCGAGGTC 74531 31 100.0 35 NNNNNNNNNN ............................... AACGCGAAGCCTGAGGGCGACGATACGTGGCGGAA 74597 31 100.0 35 NNNNNNNNNN ............................... GAGTACACGTTCGTCGACGCGACGGACAACACGCC 74663 31 100.0 33 NNNNNNNNNN ............................... TAGGCTGTTCCCGTTTGAGTCGGTGAAGTCCTT 74727 31 100.0 36 NNNNNNNNNN ............................... GCCGTCTATCCAGTAGGTCCCTCCGAGCGCCTCGAT 74794 31 100.0 35 NNNNNNNNNN ............................... TCTGAATCGGCGTTGTCGCCAGCCCACGGATGATA 74860 31 100.0 35 NNNNNNNNNN ............................... CCTCCTCGTGTCGCTATCGCTGGCTCAAACCGGGG 74926 31 100.0 35 NNNNNNNNNN ............................... TCGCGGCCGACCAGCGGGGACTACGACGACCAGAT 74992 31 100.0 35 NNNNNNNNNN ............................... GATGGCTGGGAATCGGCTGGCAGAGCGAGATACGA 75058 31 100.0 36 NNNNNNNNNN ............................... ACGAGATTGTCCACCCGTTCGGCGCGTTTACCTGTG 75125 31 100.0 36 NNNNNNNNNN ............................... TGGCGCAAGACAGGGTCACAGTCGCTTTTTCGAACG 75192 31 100.0 34 NNNNNNNNNN ............................... CCCCACGATTGAGGCACTCTCCCGCGATGGCGAC 75257 31 100.0 36 NNNNNNNNNN ............................... GTGGATCGCACCGCACACCTCCCGGTCGATCCGGAC 75324 31 100.0 34 NNNNNNNNNN ............................... CGGGATCGCGGACGTCATCACCGTCGACGAAGGC 75389 31 100.0 35 NNNNNNNNNN ............................... GGCGGTTCGTTCACTGCCGTCGTAACGTACGACAA 75455 31 100.0 34 NNNNNNNNNN ............................... GGTTCGACTTCGGCAGGGACAGGGCTTCACGGGC 75520 31 100.0 36 NNNNNNNNNN ............................... CATTATCGACCCGGTTCCCTCGACCACGATCTTCCC 75587 31 100.0 36 NNNNNNNNNN ............................... CACGAGCGCGTGGTCGTGATCATGCTCGACGAGATC 75654 31 100.0 33 NNNNNNNNNN ............................... TTGAGTGGCTCGTCGTTTTCGGATTCGAACCGT 75718 31 100.0 34 NNNNNNNNNN ............................... TCGGCAACTCCTCGATCTCGTCGGAATCCGAGAC 75783 31 100.0 35 NNNNNNNNNN ............................... GATCGTCGGTGTTGTCGACTGCGCTGAGGTGTTCG 75849 31 100.0 36 NNNNNNNNNN ............................... TCGGCTTCTGCTTCGATTTGTTCAGTCATAAATGGT 75916 31 100.0 36 NNNNNNNNNN ............................... TCGGCTTCTGCTTCGATTTGTTCAGTCATAAATGGT 75983 31 100.0 35 NNNNNNNNNN ............................... GCCGGCAGGCCGAGCGTCGCGAGCGTGACGATCCC 76049 31 100.0 43 NNNNNNNNNN ............................... ACGAACAGACACGCAAGCTCAACATCCACATCGACGGGCTGTC 76123 31 100.0 1 NNNNNNNNNN ............................... NNNNNNNNNN ========== ====== ====== ====== ========== =============================== 132 31 35 GCTTCAAACCCACGAGGGGTTCGGCTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [72,103] Score: 0/0.18 # # Final direction: NA [0.37,0.37 Confidence: NA] >NC_012032 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3958399 37 100.0 36 NNNNNNNNNN ..................................... TGCCACCGGCCCCGGCCGGCGTAGGCGACGGAGTAG 3958472 37 100.0 39 NNNNNNNNNN ..................................... CGTTGACGTGGTCGTCGAGCTGGTTCCACGGGTGCGGGA 3958548 37 100.0 36 NNNNNNNNNN ..................................... TGGAGCGATGACGCAGATGACGCAGGCGGCAGCGGC 3958621 37 100.0 37 NNNNNNNNNN ..................................... CGCGGCTAATTTCGCGCAACAAAATTGCGCGTGTTTG 3958695 37 100.0 37 NNNNNNNNNN ..................................... TGTAATGTTGTGTCCAGTTCGACCGACATACCAGCGC 3958769 37 100.0 37 NNNNNNNNNN ..................................... ACGCAATCAGCCGCGATAGCTGGCTATGGTCGGCGGA 3958843 37 100.0 36 NNNNNNNNNN ..................................... TGCGTTTGCTGGCACGCGCCGCACTTGATGGTCAGC 3958916 37 100.0 36 NNNNNNNNNN ..................................... TACTGCTGGCTTTACTCCCGCATACATTGCAATGTC 3958989 37 100.0 35 NNNNNNNNNN ..................................... ATAGCGCCAGCGGGGACGGGATGTCGGCAAGAGCG 3959061 37 100.0 38 NNNNNNNNNN ..................................... GTTCTTTTCGCGTTCCGGGAGTTGTTTATAAAACGTAG 3959136 37 100.0 37 NNNNNNNNNN ..................................... ATAATAGGCCGCCGAGTGTTGATCAAGAAAAAAAATG 3959210 37 100.0 38 NNNNNNNNNN ..................................... TACATCATTTCCCTCGCGGCGTTGCACCTCTGCTGGCG 3959285 37 100.0 35 NNNNNNNNNN ..................................... CATACGGAGCCTGATCAAACCCATGCTCCGAATGT 3959357 37 100.0 37 NNNNNNNNNN ..................................... ACGACTTCGTGCGCATTGCCACCGACCTACACAACAC 3959431 37 100.0 37 NNNNNNNNNN ..................................... TCGTCACGTTTGCGACTGTACGTGCGGTAGAATACCA 3959505 37 100.0 37 NNNNNNNNNN ..................................... TCAAAAATTCCGCATCGTCGGCGTACCCAAGCGCAAT 3959579 37 100.0 36 NNNNNNNNNN ..................................... AAGCGCAATCTCCGCCGAGCGACGAACATTGCCTGA 3959652 37 100.0 36 NNNNNNNNNN ..................................... GTGTGTTATCTGGCCGGATTGACGTTCTGGCCACCA 3959725 37 100.0 37 NNNNNNNNNN ..................................... ACGGCGCCGAGAACGGCGTTAAGGAAATACTGGCCGG 3959799 37 100.0 36 NNNNNNNNNN ..................................... CACAACTGGTTGTAGTGTACTCGATGAAACAGGCGT 3959872 37 100.0 39 NNNNNNNNNN ..................................... ATCATTCGCTCTCTGGACGGGAACGGTCCGAACCATTCA 3959948 37 100.0 36 NNNNNNNNNN ..................................... CGAACGCTCACAGCAGTGGGTGAAAACGGCAACGGA 3960021 37 100.0 35 NNNNNNNNNN ..................................... GTTTGCTCGGCAATGGCGGTTAATTGCGGTTCGTA 3960093 37 100.0 35 NNNNNNNNNN ..................................... ATCTAACGTCACCACCGGCCTGGTCTCACAAGACC 3960165 37 100.0 36 NNNNNNNNNN ..................................... CTCTGTCTTGCGACGGGGATCAGGGCGGAGGCAGCG 3960238 37 100.0 36 NNNNNNNNNN ..................................... TCGGTCACGAACTGCTTTTGGACGGGGGAAGAAGAC 3960311 37 100.0 37 NNNNNNNNNN ..................................... CATTCGCCGTAAGGATTAGCAGCTCCTTAGTTTGCGG 3960385 37 100.0 38 NNNNNNNNNN ..................................... CATACCTGTGCTACGGATTGTCGGCGTATCTTTTTCTG 3960460 37 100.0 40 NNNNNNNNNN ..................................... GCCCCGGCCGGCGTAGGCGACGGAGTAGGGGTAGCGGTAG 3960537 37 100.0 37 NNNNNNNNNN ..................................... TGCTTTTCGTTGCCTCGCTGGTCGGGAAGCTCAGCGG 3960611 37 100.0 37 NNNNNNNNNN ..................................... GCGTTTTGCGGCGATGTCGGCACTACTGCCGCCGGCT 3960685 37 100.0 37 NNNNNNNNNN ..................................... ACGGTGAGCGGGTGCGCTCGGCGCGCTGGCTCGGCGC 3960759 37 100.0 36 NNNNNNNNNN ..................................... TGCCGAGCGCTTGCGCACGGACGATGTGATCCTCAC 3960832 37 100.0 37 NNNNNNNNNN ..................................... CGCTGCTGCTCGCAGCGTTGCGCGCATCTGCTGCATC 3960906 37 100.0 37 NNNNNNNNNN ..................................... TCTGCTTCCAGTTGTCGATAATTTGCTGCGCCTGCTC 3960980 37 100.0 35 NNNNNNNNNN ..................................... GCGTTTGAGCTTGAGCTTGACGAGACTGACGGCGA 3961052 37 100.0 38 NNNNNNNNNN ..................................... GCAAGAGTTTGTCAAGGGGTATTTTGAGAGATTTTCAG 3961127 37 100.0 38 NNNNNNNNNN ..................................... GGCAAGTGAGCTGGGCCGGCTCAAGCTTACGCAGCAGT 3961202 37 100.0 37 NNNNNNNNNN ..................................... ACCATCGTGCGCTACGCGACGGCCAGCGATGCGGTGC 3961276 37 100.0 37 NNNNNNNNNN ..................................... AGCGGTTTACCGCAGACGACATCGAGCGGCGGTACGG 3961350 37 100.0 39 NNNNNNNNNN ..................................... GTGTATCACTTGCAGCCGCCGCCTCTACAAGCGGCAACC 3961426 37 100.0 36 NNNNNNNNNN ..................................... TGACGTAATGTGGTCGTAATATGACGTTGACGTAAT 3961499 37 100.0 35 NNNNNNNNNN ..................................... GTTGTAATGCTTGTTCAAGAATGCGGACTGCATCT 3961571 37 100.0 36 NNNNNNNNNN ..................................... AGCAGACGGAGCAGCGACGCGACATAATCAACATCG 3961644 37 100.0 37 NNNNNNNNNN ..................................... CGCGGCAAGGCCGGCCTGTAGCGTCTGCCCGACCGTG 3961718 37 100.0 36 NNNNNNNNNN ..................................... ACGGTGCAAAGTGGTGATCAAACAGTCGCCGGTTGG 3961791 37 100.0 37 NNNNNNNNNN ..................................... GTTCGTACCGAATAAGGCGGCACAATGATGTAGTTAT 3961865 37 100.0 37 NNNNNNNNNN ..................................... CCGAACGGCTACTGGCCAACATCCGCGAAGAGTTAGA 3961939 37 100.0 37 NNNNNNNNNN ..................................... TCCAGTTTTATGGGTTCGCGCGCGTATGGATTGCTTC 3962013 37 100.0 37 NNNNNNNNNN ..................................... GTAATGGTTTGGTAACGGGAGCGGATGTTGAAATCGC 3962087 37 100.0 36 NNNNNNNNNN ..................................... GTTTTTCGCACGCGCTACACGTCACTTCGATCATAA 3962160 37 100.0 37 NNNNNNNNNN ..................................... CTCTAATGAGCAGCAAGCATGTATCAACGAGGCGCTG 3962234 37 100.0 37 NNNNNNNNNN ..................................... GAGACAGTATGAGCGTCGAATGGATGGTTACAGTCAT 3962308 37 100.0 36 NNNNNNNNNN ..................................... TTGCTTTTGCTAAGAACCTTTTTCCAACGGCGACGG 3962381 37 100.0 35 NNNNNNNNNN ..................................... ACTAATGTCGTTCAGCACGTGCTCATTCGCACACA 3962453 37 100.0 39 NNNNNNNNNN ..................................... TACTCATGTGCGGGTCATTCTGGTAATACCATCGACATG 3962529 37 100.0 39 NNNNNNNNNN ..................................... GGCGCTGGCGCTGGCGTTGGCGCTGGCGTTGGCGTTCTT 3962605 37 100.0 41 NNNNNNNNNN ..................................... CTGGCGCGGTGTAATCAGCTACGCCAGCAAGTATCTGACCA 3962683 37 100.0 38 NNNNNNNNNN ..................................... ACAGTGTTGCCGTTATCGCGCTACGTCAGGGCTGTTGA 3962758 37 100.0 34 NNNNNNNNNN ..................................... AGATGCCAGTCAAGATGATAGCTGCTGCGTTCAC 3962829 37 100.0 38 NNNNNNNNNN ..................................... GGTGCTTAATCCGCGCTGCGAGCAGCAGCGTTGCGCGC 3962904 37 100.0 39 NNNNNNNNNN ..................................... GGTTAGTTAGGAAGGAATGATACTATGCAACTGTCTCGT 3962980 37 100.0 35 NNNNNNNNNN ..................................... CACAAAACACAATCCACTTTTTGCTAATTATCCTC 3963052 37 100.0 36 NNNNNNNNNN ..................................... GCATAACTATCAAAATCAATGCCAAAACCATCAAAA 3963125 37 100.0 39 NNNNNNNNNN ..................................... GAGTATTTCAACCGTATACATGTTAATCTCTTAATATCT 3963201 37 100.0 36 NNNNNNNNNN ..................................... GTACACCGCCTGCGGCGAGAGGCCGGCCAGCAGCCT 3963274 37 100.0 37 NNNNNNNNNN ..................................... TGTGATTGGTCACAATGTTAAACACCGCATTCTCGTT 3963348 37 100.0 37 NNNNNNNNNN ..................................... GCGGTGTGGCGTGATGCTCTTCCGGTATGCGCCCGTT 3963422 37 100.0 35 NNNNNNNNNN ..................................... ACGTATCACCCGCCGCGCTCTGCACCATTTGTGCG 3963494 37 100.0 38 NNNNNNNNNN ..................................... GTGTCGAAGCAATCGAGCAGAACGAAGTGATGTATGGC 3963569 37 100.0 35 NNNNNNNNNN ..................................... CAAACGCTCGGAGACTTTATTACGGAGATTACAGG 3963641 37 100.0 38 NNNNNNNNNN ..................................... CGTATTGCACTATCCCTTTTGCGTCAATAGAGTTATTA 3963716 37 100.0 37 NNNNNNNNNN ..................................... GTAGTAAAATTGAGATTTTCTTCTCTGCCCTATTTCG 3963790 37 100.0 36 NNNNNNNNNN ..................................... TTCGGCGGTTGCGTCGATCCTATTAATCCCGAAATT 3963863 37 100.0 39 NNNNNNNNNN ..................................... GGGATGACTTTGTTACATTAAACCCTGGCTATTACCTTT 3963939 37 100.0 36 NNNNNNNNNN ..................................... CTCACTACACTGTGGTGATGAGGCTTTTGTTTTTTG 3964012 37 100.0 35 NNNNNNNNNN ..................................... ACTCCACTGCCTAGCCCTACCCCGGCGCCTACCGT 3964084 37 100.0 35 NNNNNNNNNN ..................................... TTCCTTACATATCTTTTTGGACCGAATACTTCAAA 3964156 37 100.0 35 NNNNNNNNNN ..................................... TAAAGATTAATAGTATGAAAAGGCCTGCCAATAGC 3964228 37 100.0 36 NNNNNNNNNN ..................................... GTGCTAAAATACAATCGCTTAATCGTTTAACTTGAA 3964301 37 100.0 36 NNNNNNNNNN ..................................... TCGAAGGTGTCAATTTTACGGGAACAATCGAAATAA 3964374 37 100.0 36 NNNNNNNNNN ..................................... TATATACTATCCCTACGGGGAGTGGTATGGATACTA 3964447 37 100.0 37 NNNNNNNNNN ..................................... CTCACTACACTGTGGTGATGAGGCTTTTGTTTTTTGT 3964521 37 100.0 36 NNNNNNNNNN ..................................... TTATATTGCAGCGTACTGCCTGAGTGATGCACGGAT 3964594 37 100.0 37 NNNNNNNNNN ..................................... GGTCGATGCGTTGCGGGCAATCGCGCTTGATGAGCAG 3964668 37 100.0 36 NNNNNNNNNN ..................................... TTCGGCAGAGGGCAGGGTCACGTCGGGATGCTGGAC 3964741 37 100.0 36 NNNNNNNNNN ..................................... ATCGAATTCGAATCTCATTGCTTCTCTCGACTACCG 3964814 37 100.0 35 NNNNNNNNNN ..................................... GCCAGCGTCTGCGCGATCTCCTCGACCAGCTCCTC 3964886 37 100.0 42 NNNNNNNNNN ................GCTCAC.GTAGAGCACTG..A CCTGAGATGCCGGACCGCGCGGCTCAGATTGCTGCGTTTTTG 3964965 37 100.0 35 NNNNNNNNNN ..................................... CGTCGACGTGGTCGTCGAGCTGGTGCCGCGATTGC 3965037 37 100.0 35 NNNNNNNNNN ..................................... CCTGAGTCGTGCGCGTTCGGCTGGCGCGAGTTTGC 3965109 37 100.0 37 NNNNNNNNNN ..................................... ATAACGGTTGCTGCGACACGGGAGGGCGAGCTAATGC 3965183 37 100.0 40 NNNNNNNNNN ..................................... CGCGGATGCCCTCGGCATGGCGCTTGCTGCCGAGCGCCGC 3965260 37 100.0 36 NNNNNNNNNN ..................................... AGGCGTTGCAGCGGTTGGTGGCTGGCGGCATCCTGA 3965333 37 100.0 36 NNNNNNNNNN ..................................... ACGTTGTGCGTGCAGTCGCGGCGAGGGGTGCATCTG 3965406 37 100.0 35 NNNNNNNNNN ..................................... CTCCAACGCATCGGTATACCAGCGATCATACCGCT 3965478 37 100.0 37 NNNNNNNNNN ..................................... GTCCGGGCGGGGAGTTGCGCGTGCAGTCGCAGTTTAT 3965552 37 100.0 36 NNNNNNNNNN ..................................... CGTGCGTCCATCACGCTATTACGGCTGGTACGATAC 3965625 37 100.0 38 NNNNNNNNNN ..................................... TCGATTGCAACAGGGTAAGCGCTGCCGTCACCCCTGCG 3965700 37 100.0 39 NNNNNNNNNN ..................................... AGTTTCTGCTGCCGCTCCTCTTCATGCTTGGCGTGCTCC 3965776 37 100.0 36 NNNNNNNNNN ..................................... CCGTGCTCAATGACCGGCAAACGGCGCAATGGGAGC 3965849 37 100.0 35 NNNNNNNNNN ..................................... CGCAGCCATGACCGACCGAAAGGTGGCGGATGATG 3965921 37 100.0 40 NNNNNNNNNN ..................................... TCTCATTATCTTCTTTTTTTCCCCTATCTCTCATCATCCC 3965998 37 100.0 37 NNNNNNNNNN ..................................... ACGGTAACGTTGCTACGCGCAAGTGTGTGGTGTACAC 3966072 37 100.0 36 NNNNNNNNNN ..................................... AACATTGTTGCAGGTTTTGCTCTGGCAAGCGATCAA 3966145 37 100.0 37 NNNNNNNNNN ..................................... ATAAACGGTGACGTTGTTCATGGTCTTATCCTTTCTT 3966219 37 100.0 36 NNNNNNNNNN ..................................... GAAGATAAAAAAAAAAGAGGAGGGGGAGTGATCCCC 3966292 37 100.0 36 NNNNNNNNNN ..................................... TGCGTTATAGCGCGCGCGCAGGGCCGGCACGGTCAG 3966365 37 100.0 37 NNNNNNNNNN ..................................... TCGTGATTGTCGCTGTGTCATACCAATTCCTTGCTAC 3966439 37 100.0 38 NNNNNNNNNN ..................................... GCTAACGCGGGTTTACTATAGCGCGGTTATCTGGCGTT 3966514 37 100.0 39 NNNNNNNNNN ..................................... TCGGCGCGAAGACGTGTTACATCGCCGGTGTACCACCGG 3966590 37 100.0 37 NNNNNNNNNN ..................................... CTTTTTTCACCCCCCGCTCTCTTCATCTTGTTTTCGT 3966664 37 100.0 37 NNNNNNNNNN ..................................... TGCTCGTTCATCGCGTACAGCTCAACGAGTACACCGC 3966738 37 100.0 35 NNNNNNNNNN ..................................... TCGAAAACGCCTCGACGATAGTGCTCGAGAAAGAC 3966810 37 100.0 36 NNNNNNNNNN ..................................... AGTACTGTAGTCGTGTTGAGGTTGCACTCATTACAT 3966883 37 100.0 35 NNNNNNNNNN ..................................... AAGCCGGCGCTGCCGGCTACGCGGCCATGGGCACA 3966955 37 100.0 38 NNNNNNNNNN ..................................... TGGTGATGTTACATCACGCATCGCCCGCGCCGAGGCCG 3967030 37 100.0 36 NNNNNNNNNN ..................................... CGTCTCGATAAGGCCGCGCTTGAAGCGACCCCAGCC 3967103 37 100.0 36 NNNNNNNNNN ..................................... CGTGGACATCACGAGGCCAAGTTATGTTTACAACGC 3967176 37 100.0 38 NNNNNNNNNN ..................................... GCGGTAATGTCAAGGCGGCTTATGTGCTTAATTTTTGG 3967251 37 100.0 35 NNNNNNNNNN ..................................... TTTTTCGAGCAATTTTCGAGCGCGCACTTGTCTGC 3967323 37 100.0 35 NNNNNNNNNN ..................................... TGCCGATATTCTCGGCGAGGACTGGTCCTTCCCGG 3967395 37 100.0 37 NNNNNNNNNN ..................................... CTGTTTGGCAATCGTCGCGCGATTGGTGCGCCAGCGG 3967469 37 100.0 36 NNNNNNNNNN ..................................... ACGCGCTACACGTGATTGAGTCGCTCAATACGACCA 3967542 37 100.0 38 NNNNNNNNNN ..................................... ATGACGGCGTACTCGATCCGGCGACGTAGGAGGGCGCA 3967617 37 100.0 38 NNNNNNNNNN ..................................... AGACAACGCAAGCAGTGCGCTGCGTAACGTGCAGCGCG 3967692 37 100.0 35 NNNNNNNNNN ..................................... CTCTGGAAAGAGATCGTTGCGACAGCACAAGCGTT 3967764 37 100.0 36 NNNNNNNNNN ..................................... TCGTGAACTCGCATAGTGCTTCCTTCAGGTCCGGGA 3967837 37 100.0 36 NNNNNNNNNN ..................................... TTGCCCAACAGATAAATGCAGCAAAGATGTGATCGT 3967910 37 100.0 36 NNNNNNNNNN ..................................... ATCGGGAGCGGCAAGCTGTGCGTGACGCGGTGCCAA 3967983 37 100.0 36 NNNNNNNNNN ..................................... TCGGGTTGTCGATCAACATACCGTACTGCTGCCAAG 3968056 37 100.0 35 NNNNNNNNNN ..................................... TGTCGCCGCCGGGAAGCCTGATCCGGTACGCCCAG 3968128 37 100.0 37 NNNNNNNNNN ..................................... GGGGGCGGCACTGGCGGAGCTGTCAAGGCTGCGCTAC 3968202 37 100.0 37 NNNNNNNNNN ..................................... ATCGCAATGCTCTTTTCGATGCTCGCGTTGTTCGCGT 3968276 37 100.0 38 NNNNNNNNNN ..................................... TAAGACCCCCGCGCGCACGCGCGTCCCCCTCGCTCACG 3968351 37 100.0 36 NNNNNNNNNN ..................................... GCCCGTAGCGCTCAACTTTCCTCTTCATCTTCATCT 3968424 37 100.0 37 NNNNNNNNNN ..................................... GATCACCCATCGCCGACATCGCTGCCTCTTTTGCCCA 3968498 37 100.0 35 NNNNNNNNNN ..................................... TGTTGTCTTACAGAAAATAGATTTTGATTTACAGC 3968570 37 100.0 37 NNNNNNNNNN ..................................... GCGCCGCTTGAGATGGTGGAGTACATGATGAATGTCG 3968644 37 100.0 40 NNNNNNNNNN ..................................... CGGTCAATGAAAAGCTGTGTGTTTTCTTCTAGCACGATCC 3968721 37 100.0 35 NNNNNNNNNN ..................................... ATCTGAGCAGAAATTTGTTCGTAGCTGCCGTAAAA 3968793 37 100.0 35 NNNNNNNNNN ..................................... TTTCTATGGCAAGATAGTTGGAGTTCGACCGGAAG 3968865 37 100.0 38 NNNNNNNNNN ..................................... TGGCGAGCAGAAAGACGCCCATCGCAGCAACTGAAGCA 3968940 37 100.0 38 NNNNNNNNNN ..................................... TTGCTATTCGTTCCCACAACTGCGCATACGCTCTATGT 3969015 37 100.0 38 NNNNNNNNNN ..................................... TAGAGCAGCAAGTGGAAATGCGGAGCACCGCGCTGCTG 3969090 37 100.0 36 NNNNNNNNNN ..................................... AAGAGCAGGACGGGGTAGAGTGGCTGCGCGGTGTTA 3969163 37 100.0 37 NNNNNNNNNN ..................................... CGCTCCCAGCGCATCACGATCCAACAACTGCACTCCC 3969237 37 100.0 36 NNNNNNNNNN ..................................... GTATAAATAGGAGGTACGGTAATGGGTATTCGTGAG 3969310 37 100.0 38 NNNNNNNNNN ..................................... ACGATTGAGTTTTCCTCAGAGCCGCCGCCGATTATCGA 3969385 37 100.0 38 NNNNNNNNNN ..................................... CCGGCGCCAACACCGTCTCCGATACTGACGTCGTTGTT 3969460 37 100.0 37 NNNNNNNNNN ..................................... ACGAGCAACTCACTAGTTGATATAGTCTAAACGTGGT 3969534 37 100.0 38 NNNNNNNNNN ..................................... TGTACCGACAACGACGCCAACGGCGGCGCAGTTTAGCG 3969609 37 100.0 38 NNNNNNNNNN ..................................... GGCTGGTACTCTGTGTCATACCAGCCGTAGTACCGCGA 3969684 37 100.0 36 NNNNNNNNNN ..................................... GCTCGTCCACGTCATCGCTTCACTCTTCGTGTATCA 3969757 37 100.0 37 NNNNNNNNNN ..................................... AACGAAAGCGTTGGGATGACAAAAAGATCGAAGAAGC 3969831 37 100.0 36 NNNNNNNNNN ..................................... TTTCGGACGGGGGAGGAGAACGGTAACGTTTGTTGG 3969904 37 100.0 38 NNNNNNNNNN ..................................... TAACTAAACTACTACCCATAGACATTATAGCATACGTC 3969979 37 100.0 40 NNNNNNNNNN ..................................... ATTCAGTAATCAGTGACAAAACGTTGGAACCGCGCAGGAA 3970056 37 100.0 36 NNNNNNNNNN ..................................... CTCTTGCTCCTCCTCGGCACTCTCCGTGCCACTCTC 3970129 37 100.0 37 NNNNNNNNNN ..................................... TTGACTGTTTCGCGGATTGAATTGACAATACGGCAGC 3970203 37 100.0 38 NNNNNNNNNN ..................................... CGCCTCATTCTGCGCGGGGGGCGAGCAATCGGAAAGTG 3970278 37 100.0 38 NNNNNNNNNN ..................................... CTCGCGTCCTGCGCCGCCACAATGCCCCGTTCCCAAAT 3970353 37 100.0 38 NNNNNNNNNN ..................................... GTTATATTCAATGAGCGGGTGGCTACGGATATTGAAAA 3970428 37 100.0 39 NNNNNNNNNN ..................................... GTTCATGGCCAGCGACATGGATCGTCAGCCCGTAATCCC 3970504 37 100.0 37 NNNNNNNNNN ..................................... CCGTATGACAGCAGCTGTTTCATCCTTTCTTCCTTTC 3970578 37 100.0 35 NNNNNNNNNN ..................................... TGACAAGGTGCGTCTCACTGCCGATACCGCCAAAC 3970650 37 100.0 36 NNNNNNNNNN ..................................... CGTTGTGGTGAGCAATGTAAACACCTTCGCAGCAAT 3970723 37 100.0 38 NNNNNNNNNN ..................................... CGCACGGCAACGCACAGAATGATGGTGCGCAAGGTAGC 3970798 37 100.0 38 NNNNNNNNNN ..................................... AGTTGCAACGCAAGCTGCTCCACGTCGTGGAGCGATGC 3970873 37 100.0 35 NNNNNNNNNN ..................................... ACTTGGCAACACGCTTTAGGTTGTACCGTTCTAAC 3970945 37 100.0 36 NNNNNNNNNN ..................................... TACATCGAAAGTACGTTTCGGTGTGAACGGTGCTAT 3971018 37 100.0 35 NNNNNNNNNN ..................................... CGCAACTCTGGTAGTTCATTCCGCTCGGTAATCAA 3971090 37 100.0 36 NNNNNNNNNN ..................................... CTAAGATACAATCCGGTTCCGAATTGACGGCCCAAC 3971163 37 100.0 36 NNNNNNNNNN ..................................... CTGTCGGTACCCAATGCAAAACGGCGCGGGCCGGAT 3971236 37 100.0 36 NNNNNNNNNN ..................................... CTCCATTACCGTATCACAATCTGGTCACACGCGAAC 3971309 37 100.0 36 NNNNNNNNNN ..................................... GCGAGACGGCGCAACACGCCAACGAGCAACTCACTA 3971382 37 100.0 39 NNNNNNNNNN ..................................... TCACGCGGCGCGTCAATTCGTCGTTGCGGTGTGTTCTTT 3971458 37 100.0 35 NNNNNNNNNN ..................................... CAACACGCCTATGCTTTCCACATTCATCACATCAC 3971530 37 100.0 38 NNNNNNNNNN ..................................... TGTGAACATGAATTGGTATTGGTGTCGGTGTGCGACGG 3971605 37 100.0 36 NNNNNNNNNN ..................................... CTCTACCACATTACGGTGTGGGGGATGACGTTGTAC 3971678 37 100.0 36 NNNNNNNNNN ..................................... AGTAGACGGAAGTGGGTAATACGCAGAATTGTTCCC 3971751 37 100.0 36 NNNNNNNNNN ..................................... CGATTTTACTGAACACCATCGCCGACTACACTGCGA 3971824 37 100.0 39 NNNNNNNNNN ..................................... AACATTGTTGCAGGTTTTGCTCTGGCAAGCGATCAACCA 3971900 37 100.0 37 NNNNNNNNNN ..................................... GAGCGCGGATGGTAGCGCGGTCGCTTGAACGCATAGA 3971974 37 100.0 36 NNNNNNNNNN ..................................... AACATAAACCAATCAACATCACCGCTGCTCAATCGA 3972047 37 100.0 35 NNNNNNNNNN ..................................... ACGCCGAACCGATGTGTTGCACGTGCTCAGTTGGT 3972119 37 100.0 38 NNNNNNNNNN ..................................... ATTCATACAGGTCTATTCCTCGGTAGTACGTCTACCGT 3972194 37 100.0 36 NNNNNNNNNN ..................................... GAGTATGTTAATCAACAATGTCAAGAATGCGTAATA 3972267 37 100.0 39 NNNNNNNNNN ..................................... GCGCTTGAACGGCGAACAACTTGCGGTTGCCCCCCTCCA 3972343 37 100.0 38 NNNNNNNNNN ..................................... TCCCATAATAACCAGCCGTTGCGGTGGTCACGGGCCAC 3972418 37 100.0 37 NNNNNNNNNN ..................................... CTTATGCTGCCTACCAGCAATGGAGAGCGCTCCACAC 3972492 37 100.0 36 NNNNNNNNNN ..................................... TTAATGAAAAGCACGGTTCCGTTAGGGACACCGACA 3972565 37 100.0 38 NNNNNNNNNN ..................................... TGCACACTGCTTTGGTTGTTCTGCACACCGTCCCGCCC 3972640 37 100.0 37 NNNNNNNNNN ..................................... ACACCAATCCCCCCTTGGCTTATCACAGCCAGGGGGG 3972714 37 100.0 36 NNNNNNNNNN ..................................... CTCTGCGTGTGGCGAACGGCCCGTTCCCGAAATCCC 3972787 37 100.0 35 NNNNNNNNNN ..................................... CGACGGGTTTTTGCTGATCGAGGATGAGAAAATCG 3972859 37 100.0 39 NNNNNNNNNN ..................................... TTTGTCTTAGAACTCGGCAGCGGCCAGCTCTATGACCGC 3972935 37 100.0 38 NNNNNNNNNN ..................................... GTAACTGTAAAACTTTAGGGGGGGGGTATGGGGGGGAG 3973010 37 100.0 36 NNNNNNNNNN ..................................... GCACGTTGGCTGTCTCGTGGGAGTTGATGTATCAGG 3973083 37 100.0 37 NNNNNNNNNN ..................................... TTCATGCAGCGGTAGAGAAGTACTACACCGAACGGTG 3973157 37 100.0 38 NNNNNNNNNN ..................................... ACGGCGACGGTTGTTGGGCATCGCGAGTTGGGGCAAAC 3973232 37 100.0 38 NNNNNNNNNN ..................................... GACGGATACTATCGATCCGATCCGTTCGTAGTCACCGG 3973307 37 100.0 37 NNNNNNNNNN ..................................... AGATTGCATTAGGTGATCCTGCCGACATCTCATTTCT 3973381 37 100.0 38 NNNNNNNNNN ..................................... CGTACAAACCGGCAACCGTGGCCCGCGAGATAACACCG 3973456 37 100.0 37 NNNNNNNNNN ..................................... TGTTCAGTGCGCTGATCGTGCTGCATCGTGATATGGC 3973530 37 100.0 34 NNNNNNNNNN ..................................... GCGATCCGTGCGCGCACAAGTACCCGCGTACCGC 3973601 37 100.0 36 NNNNNNNNNN ..................................... GAGTATGTTAATCAACAATGTCAAGAATGCGTAATA 3973674 37 100.0 38 NNNNNNNNNN ..................................... GTGATAAACCATGTCGTGACTTCGGCCACCATCGGATC 3973749 37 100.0 35 NNNNNNNNNN ..................................... GGTACATCTTTTCCTCCTTCTTGCTTGCTGGCTTA 3973821 37 100.0 37 NNNNNNNNNN ..................................... TGTTCAGTGCGCTGATCGTGCTGCATCGTGATATGGC 3973895 37 100.0 34 NNNNNNNNNN ..................................... GCGATCCGTGCGCGCACAAGTACCCGCGTACCGC 3973966 37 100.0 38 NNNNNNNNNN ..................................... AGCGCTCATAAAAACCCCTCCCCCACTACACCATCGTC 3974041 37 100.0 35 NNNNNNNNNN ..................................... TTGACGCGGCGTACAGTGCTAAACGCGGGTGGGCG 3974113 37 100.0 37 NNNNNNNNNN ..................................... AACATCCGTAGTGAAAGTGAGTTGCGCGATTGTGCGT 3974187 37 100.0 36 NNNNNNNNNN ..................................... GCAATCTTGCCAGTTGTTTTCCAATGTTATAGTCGT 3974260 37 100.0 35 NNNNNNNNNN ..................................... GCGATAGTGACAGAGCTATGGTGACAGCAAACGGA 3974332 37 100.0 37 NNNNNNNNNN ..................................... AACATTTGGTTTAGCTCCGCCGAGGTGTGGCGTGAGC 3974406 37 100.0 38 NNNNNNNNNN ..................................... CCAAATCCGGCAATCGGTTCACCGTGTGGACGGATAAG 3974481 37 100.0 38 NNNNNNNNNN ..................................... ATGATCCTGAGCGACGGGGCCGGCAGCAACACGGTCAG 3974556 37 100.0 37 NNNNNNNNNN ..................................... CCCGAATTTCCTCAATCACGCGGCTAATGTCACGCAG 3974630 37 100.0 35 NNNNNNNNNN ..................................... CGGCGGCGCGCTCGAATTGGCGCAGCTCGTCACGC 3974702 37 100.0 36 NNNNNNNNNN ..................................... ACCTGCTGGGCGGCCAGATCGTGGAGCGATTTGGCC 3974775 37 100.0 35 NNNNNNNNNN ..................................... ATCCCGCCAATGGCGGTAATCACACGCGCCGGCAG 3974847 37 100.0 35 NNNNNNNNNN ..................................... TCTCGTTGCTTGTCGATGTCAATGCTGACATCGCA 3974919 37 100.0 38 NNNNNNNNNN ..................................... CGCTGACCGTCGGCATCCAACGCGCCAGCGAGAGCTCG 3974994 37 100.0 40 NNNNNNNNNN ..................................... GTTGCCGTGGCCACGTGGGATGAGGACTACGCGCCGCTGG 3975071 37 100.0 39 NNNNNNNNNN ..................................... ATCTCATACTGTGCCGACGGCTCCCACAGCCACACGACC 3975147 37 100.0 36 NNNNNNNNNN ..................................... GGTTGTTGGCGGGTTCAGGGTGAGCTAACCGCAGCA 3975220 37 100.0 37 NNNNNNNNNN ..................................... CGCACGTGCCGGTAGTTGTGTATGTGATGATGGCGGA 3975294 37 100.0 37 NNNNNNNNNN ..................................... ATTATACTACCGTGTCGCACGATGTCAAAAACCGCCG 3975368 37 100.0 39 NNNNNNNNNN ..................................... TTCCTTACCCCGCAGGGGTATATGACGACAGAATTACTT 3975444 37 100.0 36 NNNNNNNNNN ..................................... TCGATAGACAGCTCGGTATAGTCGTTCGACGGGCGG 3975517 37 100.0 38 NNNNNNNNNN ..................................... ATGTCACTCATTACACAGACGGCGGCGCACGGAGCACC 3975592 37 100.0 38 NNNNNNNNNN ..................................... AAACCATTTGGTGCCTTCGCGCACCACCCAGATGAACA 3975667 37 100.0 36 NNNNNNNNNN ..................................... CGCTGCACAGATTGAGCACGTGCAGCGCGGAATCGG 3975740 37 100.0 37 NNNNNNNNNN ..................................... GTCAAACTCCGCCGTCACCAGCCAGGTTGACATGGCC 3975814 37 100.0 36 NNNNNNNNNN ..................................... TGCCGCCCGCGCAGAGCAGAACAAGCTGGCTTTGGT 3975887 37 100.0 36 NNNNNNNNNN ..................................... ATGCTGCGGATCGCGGGTATCAGACAGATGTCGTTC 3975960 37 100.0 37 NNNNNNNNNN ..................................... ATGCAGTACTGTTGTGCTGTTGCGCGGGTGATACCGC 3976034 37 100.0 38 NNNNNNNNNN ..................................... TAGCGTCACCGAACTACTTGAGCGCATGACCAACAAGG 3976109 37 100.0 36 NNNNNNNNNN ..................................... CTGTAGTACATTGTGGTTGTCTGTACTGGATTAGAC 3976182 37 100.0 35 NNNNNNNNNN ..................................... CGGAGAACATTTCACCGTTCATCATCCATCTCGTG 3976254 37 100.0 37 NNNNNNNNNN ..................................... CGGTTGGGAGTTGGATCGTGTACGCCCGACTTGACGT 3976328 37 100.0 39 NNNNNNNNNN ..................................... ATGGTATGGTACCTGATGTTGGAATATCTGATACCGTAG 3976404 37 100.0 36 NNNNNNNNNN ..................................... TGCTAACAGCAGCAAAGAGTACGATGCCGTTGTCTT 3976477 37 100.0 37 NNNNNNNNNN ..................................... TTCAAGACAAGCGCCTTGTCTTCTCTGATATTGACTT 3976551 37 100.0 35 NNNNNNNNNN ..................................... AGCGGTACGGCGAAAGATACTTCACATCTGGTAAG 3976623 37 100.0 36 NNNNNNNNNN ..................................... AAACACATGACAAACCGAAACAGACAGAGCGCTGTC 3976696 37 100.0 36 NNNNNNNNNN ..................................... ATGCAGTACTGTTGTGCTGTTGCGCGGGTGATACCC 3976769 37 100.0 35 NNNNNNNNNN ..................................... GCGTGAATGACGCTTGTTCAGCTTGAATACGTGAT 3976841 37 100.0 38 NNNNNNNNNN ..................................... CGCAATCGGGGTCGGTATGTGTTTCGCGTTCAAACAGC 3976916 37 100.0 38 NNNNNNNNNN ..................................... CGTCAGGGATGGTATCAATGAAATTATCGGCCAAACAG 3976991 37 100.0 36 NNNNNNNNNN ..................................... TCCCTGACGAGGCGTGGCTTGCGGCAACCAAAGTAG 3977064 37 100.0 40 NNNNNNNNNN ..................................... TGTACTGTATGTTATCTCAGGCGAAGGGAAAGAAACGCGC 3977141 37 100.0 38 NNNNNNNNNN ..................................... ACTCACGTTGGGCGCGATCAAGCCACGCGCCTGCTTGC 3977216 37 100.0 34 NNNNNNNNNN ..................................... GCAACGGCTACCATGCGCCCAACACCGTATGCGC 3977287 37 100.0 35 NNNNNNNNNN ..................................... TTGAAATTGTAGACTTTGAACAACATTGTTTTCCT 3977359 37 100.0 37 NNNNNNNNNN ..................................... CCCGTCTCGTGGATCATCTGCGCGATTGCACAGAGCC 3977433 37 100.0 37 NNNNNNNNNN ..................................... CGTTGGGCTTCTTAGCGCTCGTGCGCCACATCCAGCG 3977507 37 100.0 39 NNNNNNNNNN ..................................... ATGATAAGGACGGCGAGAACGGCGATGACTTGCGCTGCA 3977583 37 100.0 36 NNNNNNNNNN ..................................... AAAGCGTGTTGCCAAGTTGGAAATGAGCCTTATCCC 3977656 37 100.0 35 NNNNNNNNNN ..................................... AACAGTAAACCGACAACGCGCGGCGAACAAATAGC 3977728 37 100.0 38 NNNNNNNNNN ..................................... GCAATACATCGGCCTGACCAAAGTCGCGACAACGTACC 3977803 37 100.0 36 NNNNNNNNNN ..................................... GGACGGAGGGCGTCGTAGTAATCAAGCATATCAGGC 3977876 37 100.0 35 NNNNNNNNNN ..................................... GCGGCGTTGTATGCCGGCCATTGACCGCGATGAAA 3977948 37 100.0 37 NNNNNNNNNN ..................................... TATATCAAGCACAACGTCACAGAAGCGGTTGATTTAA 3978022 37 100.0 36 NNNNNNNNNN ..................................... CGCAATCGGGGTCGGTATGTGTTTCGCGTTCAAACA 3978095 37 100.0 37 NNNNNNNNNN ..................................... CTTATTGCGTTGTGGGTCGTATTGCCATAACGGGTCT 3978169 37 100.0 36 NNNNNNNNNN ..................................... GCGTCGGAGACAACACGGATGAGGAATAACGGTAAG 3978242 37 100.0 39 NNNNNNNNNN ..................................... TTTACTTGTGGTGGATCGAGGATCGTATCCCACACGAGC 3978318 37 100.0 38 NNNNNNNNNN ..................................... CACGCGGCGGGCGGTACTCGCGAATAATGCGTACCACC 3978393 37 100.0 36 NNNNNNNNNN ..................................... AAACCCGTTCCCGTATATGCGATTGACGTACCGCAA 3978466 37 100.0 37 NNNNNNNNNN ..................................... ACATTCCGATCACGTTTCGTCAAGAAGCGACTATTCG 3978540 37 100.0 37 NNNNNNNNNN ..................................... CAGGCCATCGCTGATGACGACGAGCTTGACATCTGGC 3978614 37 100.0 37 NNNNNNNNNN ..................................... ACCTGTGCGACGGCGAGGTCGTGGAGCGATTTGGCCG 3978688 37 100.0 37 NNNNNNNNNN ..................................... CTTGCACTTCTCGCAACTGGGCACGAGTTGAAGGTGC 3978762 37 100.0 36 NNNNNNNNNN ..................................... GCGCATTATGGCGCAACGCGAGCGCTTGTCGTTGGC 3978835 37 100.0 35 NNNNNNNNNN ..................................... CTCGTGCGGTTTGCGGTGCTGGTGGGCGCGTACAG 3978907 37 100.0 39 NNNNNNNNNN ..................................... ATCCGCGCTGTCGCTGCGGGGTAGGGCTGCGCAGAGTGG 3978983 37 100.0 34 NNNNNNNNNN ..................................... CCGCAATCGCCGGCTGGCGCGTGCTGCGCTATAG 3979054 37 100.0 38 NNNNNNNNNN ..................................... ATTGGCGTCGCCGGTGCGCTTAAACTCGTTTAGGTACT 3979129 37 100.0 37 NNNNNNNNNN ..................................... GTTCTACCGGCAGTGTAATGTATAACCCGTCGCGGCG 3979203 37 100.0 36 NNNNNNNNNN ..................................... ACCCAGGAATCTGGGGAGTGGCGAACGGACCCTTCC 3979276 37 100.0 38 NNNNNNNNNN ..................................... ATCTTGACTACCGGTCTGCGTTCATAGCGCCCAGCGGC 3979351 37 100.0 38 NNNNNNNNNN ..................................... TGTTGTCAACGGCCAGCCGCTTGGCCCGCTGCTTATTG 3979426 37 100.0 37 NNNNNNNNNN ..................................... GAGACGAGCGAAATAAGTTCCAACAATTGCCGGATGG 3979500 37 100.0 35 NNNNNNNNNN ..................................... GCTCGAAATAGCAGCGCAATTGGGCGTCACCGAAA 3979572 37 100.0 36 NNNNNNNNNN ..................................... CAGCGTTACGGCAGCGCTGATGTTCCATTGTAAGCG 3979645 37 100.0 37 NNNNNNNNNN ..................................... TTGTTCGTTCCGGCATTGGTCAAAGCGATCAAGCAAA 3979719 37 100.0 36 NNNNNNNNNN ..................................... ACTTCGCCGCCCCACCGTCGCCGCTTGCCGTCCCGC 3979792 37 100.0 35 NNNNNNNNNN ..................................... AACTTATACAGTTCTGCCTGCAAAGCGTCGGCGAT 3979864 37 100.0 37 NNNNNNNNNN ..................................... ACCAGAACGTTCGAGCAACGCAACGGCGGGAAGTTCT 3979938 37 100.0 37 NNNNNNNNNN ..................................... TACAAGACAATTTGCTATGAGCAGGAAAGCCAACGAG 3980012 37 100.0 40 NNNNNNNNNN ..................................... GGGCGCTTGATCTGGCAGAGCGCCGAGCAAGGAAACTACG 3980089 37 100.0 37 NNNNNNNNNN ..................................... AGTGGCTGATAGCCGGCACCGGTAGGGTCGTTTTGGA 3980163 37 100.0 40 NNNNNNNNNN ..................................... TCGGATATTTCGCGAAACGGTTCAATACTGACTATCATTT 3980240 37 100.0 35 NNNNNNNNNN ..................................... GGGAGTGGGTTTGGCTCCCTGGCGAGTGGTGGCGG 3980312 37 100.0 37 NNNNNNNNNN ..................................... CGCTGCCATCAGGAAAACGCTGCCCGAATTCGGCGGC 3980386 37 100.0 38 NNNNNNNNNN ..................................... AGCAACCCGCCCCCTACCACCGCAATCAGCCACGCAAC 3980461 37 100.0 38 NNNNNNNNNN ..................................... GCTATTGCGCTGACCGGCGTGCCGGATTGGACAGCGTC 3980536 37 100.0 35 NNNNNNNNNN ..................................... GAGATCGACCCGGCTGGGGTCTCACAGGCGTTCAC 3980608 37 100.0 37 NNNNNNNNNN ..................................... CGTATCTTGTTAGTTGGCGAGACGGAGCGTAGCAACC 3980682 37 100.0 38 NNNNNNNNNN ..................................... TCGTAAGCGCAATGCCGCCCGCGCCGACATCCGTAACG 3980757 37 100.0 38 NNNNNNNNNN ..................................... GTTTATCGCGTATGGCGCTTGGCTGGTCAGAATTGAGC 3980832 37 100.0 37 NNNNNNNNNN ..................................... CTGTGATGTTATGGTCGAAGTTTATTGGAAAAATACG 3980906 37 100.0 37 NNNNNNNNNN ..................................... ATCTCGGTGAATTCGCGTTTCGCGTTCACTTTGTCGG 3980980 37 100.0 37 NNNNNNNNNN ..................................... ACGATACCGACGCCGCCGCCGGTCTGGAACTATCAGA 3981054 37 100.0 36 NNNNNNNNNN ..................................... GCGTTATAGTATTGAACTGTATCGCGGTGAAGACGG 3981127 37 100.0 37 NNNNNNNNNN ..................................... CTGGGGGGCGGGTGACGGATATACTTCAGCAACTCGC 3981201 37 100.0 36 NNNNNNNNNN ..................................... TGGTACTAATACCATCACTGTATCCGGCCAATCCAC 3981274 37 100.0 37 NNNNNNNNNN ..................................... GTGACAAAGTTCCACCGGCAACCAACTTACGCAAATA 3981348 37 100.0 36 NNNNNNNNNN ..................................... ACTACTCTAATCGTTGCCGAAGTTCCTTCTCCGATT 3981421 37 100.0 36 NNNNNNNNNN ..................................... TGGCCAAGTACTTACTCGCGTAGCTGATGACGGCGC 3981494 37 100.0 36 NNNNNNNNNN ..................................... TTACGTAGGCGAGTTGTCACTTCTTAACGATATGGC 3981567 37 100.0 39 NNNNNNNNNN ..................................... TTCTGCGGTCTGTTCGTCAAAGAGCGACTGAACGGCCCA 3981643 37 100.0 35 NNNNNNNNNN ..................................... ATTGAATATAACGGGTAGGATAATGTCACGGTAGC 3981715 37 100.0 36 NNNNNNNNNN ..................................... GCGCTTCGCGTCGTTCTATTTCTGCTACGCGATTAC 3981788 37 100.0 37 NNNNNNNNNN ..................................... ATCCGTTCGTAGTCACCGGCGGTCGGGAGACGGTAGC 3981862 37 100.0 38 NNNNNNNNNN ..................................... GTAAATGCTGCGTGCAGGCCAACGTTATCAACGTCAAA 3981937 37 100.0 36 NNNNNNNNNN ..................................... CCAATCGACGTAACATCAAACCAGCCGGTTGCAGAA 3982010 37 100.0 36 NNNNNNNNNN ..................................... GATAGCTGACCGCCCGCGCCAGTGTTCTCATACGCC 3982083 37 100.0 36 NNNNNNNNNN ..................................... TTCAATGTGAGTTCCGGTGTGGTTGAAGGTGAGTGT 3982156 37 100.0 35 NNNNNNNNNN ..................................... TCTTTACATGCACTTCAGGGATGGCCGTTTGAACG 3982228 37 100.0 36 NNNNNNNNNN ..................................... CGTGACACATCACCACGTGACACATCGCAACTTGAC 3982301 37 100.0 35 NNNNNNNNNN ..................................... TAAACACGCGGGAGGTGAATAGCAACTGCGTGTGA 3982373 37 100.0 39 NNNNNNNNNN ..................................... TCGTCTCCGCTGTCGCTGTCGCTGCTGTCGTTGTCGCCG 3982449 37 100.0 36 NNNNNNNNNN ..................................... ATTGACAAGCGACTGTCGCTGCTGCGCGTGCGTCGT 3982522 37 100.0 39 NNNNNNNNNN ..................................... CTGCAGCAGTCGCGTAGTAACTGCTACTACGAGCAGTGA 3982598 37 100.0 35 NNNNNNNNNN ..................................... GAGATCGACCCGGCTGGGGTCTCACAGGCGTTCAC 3982670 37 100.0 37 NNNNNNNNNN ..................................... TGGGGCGATGACGCAGACGGCAGCGGCAACGATGCTG 3982744 37 100.0 36 NNNNNNNNNN ..................................... TTGTACGACGCCTCCTGACGTGCGATTTATATATTG 3982817 37 100.0 38 NNNNNNNNNN ..................................... GAGGACGTCGAGAGTGGAATTGGGGTTCTCATCAACCT 3982892 37 100.0 37 NNNNNNNNNN ..................................... TTATATTTGGGTAATATGCCCAGTTCTTACACACAAT 3982966 37 100.0 37 NNNNNNNNNN ..................................... GAGACGTTTGAGCAAGATGGTAACGATTTGATATTTC 3983040 37 100.0 38 NNNNNNNNNN ..................................... GTTCACTAATCGTTACCGTTGGCATTTAGCACTCCCCT 3983115 37 100.0 35 NNNNNNNNNN ..................................... TGGATTATCGGCGCGGGTGTGGCCAACCATAATCA 3983187 37 100.0 37 NNNNNNNNNN ..................................... GGCAAAACGTATCGCGGTCGGAGCGGATACTTTCACT 3983261 37 100.0 36 NNNNNNNNNN ..................................... CGTAGATCAATAACCGTACCCTGTGTGTCAAGATAC 3983334 37 100.0 35 NNNNNNNNNN ..................................... CCTCTCGCGCGGTGATGGCTCGTTTACGCAGATAG 3983406 37 100.0 38 NNNNNNNNNN ..................................... CGGATGATAGCGATATTGAGGCGTTAAAGGCAGAGTTG 3983481 37 100.0 37 NNNNNNNNNN ..................................... GCGCTCGATAGCGCGGCGAAGGCTAACGGCGAAGTCG 3983555 37 100.0 35 NNNNNNNNNN ..................................... GTACTCGTTGTAACTAGACGCCGAAAGCAACCAAA 3983627 37 100.0 35 NNNNNNNNNN ..................................... TACACACACGAAGGCGTCATCAACGCAGTGAGGTT 3983699 37 100.0 37 NNNNNNNNNN ..................................... GGATTAAGTCACCGATTGGCTACGAGATCATCAACCT 3983773 37 100.0 34 NNNNNNNNNN ..................................... CGAAAAACGTTCCACATCGAGGAACCTTTGCCGT 3983844 37 100.0 35 NNNNNNNNNN ..................................... CTCGCAGCAATTTTGAACCGTCCGGCGCAGTTTCA 3983916 37 100.0 36 NNNNNNNNNN ..................................... CATCCCAATTATAATGGAGTCGGGATCACCCACAGG 3983989 37 100.0 37 NNNNNNNNNN ..................................... CAAATGGAATAATGCCCTATCCGCATACTCGTTGCGG 3984063 37 100.0 35 NNNNNNNNNN ..................................... TTCTACTGTCGTCATAACGAACACAAGTCAATCGA 3984135 37 100.0 36 NNNNNNNNNN ..................................... CGTACGCGGAGGAAATACCGCTGGCAACATCGCTCA 3984208 37 100.0 37 NNNNNNNNNN ..................................... TCGCTGTGGATGTCGGGGTTGGTGTCGGGAGCGATGT 3984282 37 100.0 39 NNNNNNNNNN ..................................... TTGACCAGAATAGGCCTGGCACTCGGCAAAGGAAGGTGA 3984358 37 100.0 38 NNNNNNNNNN ..................................... GCTTTGTCACCGAGCGCCGGATCGTCGAAGATACGCGC 3984433 37 100.0 38 NNNNNNNNNN ..................................... AACGCTCTCTAAGCGTGTGTTTAGGAGCGGAACGTCGA 3984508 37 100.0 36 NNNNNNNNNN ..................................... CGCGATGCGTATATCGACATTCCGCGACGCGGTTCG 3984581 37 100.0 37 NNNNNNNNNN ..................................... TCACTCATCTTTGCGACAGGGTACGAACGTGATAGCC 3984655 37 100.0 36 NNNNNNNNNN ..................................... ATTGTACCCGTAGGCGGATCGGGAGGGATAAACCGA 3984728 37 100.0 36 NNNNNNNNNN ..................................... CTACAGGCTTGATTATCCGGCAGATTTTGGGGTTGA 3984801 37 100.0 36 NNNNNNNNNN ..................................... GGGACTACTGCCGGCGCGAACGATACAATCCTATTG 3984874 37 100.0 36 NNNNNNNNNN ..................................... CTTTCGTTGCCAGCAGCAACGCGCCGTAAACGCCGA 3984947 37 100.0 36 NNNNNNNNNN ..................................... CTTTCGTTGCCAGCAGCAACGCGCCGTAAACGCCGA 3985020 37 100.0 35 NNNNNNNNNN ..................................... TCGATCGCAAGCGTTCCGTCTTCAATCTCCGTCAC 3985092 37 100.0 37 NNNNNNNNNN ..................................... GCGCGAACGAGCGGGTCGGGACATCGCTGAATCCCCG 3985166 37 100.0 35 NNNNNNNNNN ..................................... GGTAAGCTTGCCCGCCAGCCCTTTGTCGTCTTCTC 3985238 37 100.0 36 NNNNNNNNNN ..................................... GCTGTCGGGCAGCGAGGCAATGGTTCGTTCCACCAG 3985311 37 100.0 36 NNNNNNNNNN ..................................... ACTTGTCAAGAGGGAAATCTGAGAAATCTTGATGAA 3985384 37 100.0 35 NNNNNNNNNN ..................................... GCCATCAGAAAGGTATACAACTCGGTTAAGAATGG 3985456 37 100.0 37 NNNNNNNNNN ..................................... GTCGGGCGATCCAGCACTGCTGCAAATCTTTCGCTCT 3985530 37 100.0 36 NNNNNNNNNN ..................................... AGCTGTTTTAGAACGGTAGGTCTTCATTATTCTCCA 3985603 37 100.0 36 NNNNNNNNNN ..................................... CGTTTTGAAGGAAGCTGAGGCAATTTTGAATCACAA 3985676 37 100.0 38 NNNNNNNNNN ..................................... GCTTTGTCACCGAGCGCCGGATCGTCGAAGATACGCGC 3985751 37 100.0 36 NNNNNNNNNN ..................................... CTTCTTCTTCGTCTAGCTCTTCGTCTTCCCCATCTC 3985824 37 100.0 37 NNNNNNNNNN ..................................... TCGCTCGTCTCCCACTCTCCGCACTCTAACCCTTCCG 3985898 37 100.0 35 NNNNNNNNNN ..................................... CGCTTGCTCGCGGATGGGTATGTAACACTTCACGT 3985970 37 100.0 23 NNNNNNNNNN ..................................... GTAGAAGGGGAGTGGGGAATAGG 3986030 37 100.0 1 NNNNNNNNNN T..........A......TC..TA.A.C.CTGA..C. NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 376 37 36 CTTTCAACAATTTCGGCTCACGGTAGAGCACTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.05%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-5.60,-5.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [18-13] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [305,171] Score: 0/0.18 # # Final direction: R [0,0.68 Confidence: HIGH] >NC_012032 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 709768 37 100.0 41 CCTCGCGGGA ..................................... TCCGCAGACTGACGAGGAATGCGCAGCTGCGGCGTTGGCCA 709846 37 100.0 44 GCGTTGGCCA ..................................... AGAAAGGAGTACACCAATGGCAACCTGGATCAAGACCGACATCG 709927 37 100.0 43 ACCGACATCG ..................................... GCAAACCTTGCGGAGTGGATCACTCAGATCACGACTGCACTGT 710007 37 100.0 40 ACTGCACTGT ..................................... GAAGAGAAGGAGGAGGTGTTCAAGTTTCGCTTTCTAATAG 710084 37 100.0 40 TTTCTAATAG ..................................... CCTGGCCGGCCAGCGGATCGGTGAACTCCCAGGCCAAAGA 710161 37 100.0 41 AGGCCAAAGA ..................................... AGACTGGCAAGACTACGCGCTGTTTCGATATTGGTTTTTAA 710239 37 100.0 39 TGGTTTTTAA ..................................... ACGATATTGCGCCGCCCGATAAATTGCTCCCGCGTTGAT 710315 37 100.0 41 CCGCGTTGAT ..................................... ACATAGGCGGCGTTGGCGTCAAGAATCAGATTGATCGCTTT 710393 37 100.0 40 TGATCGCTTT ..................................... GCGTCTACCAAGATTGGCATATAATCCAGTTCCTCGATCG 710470 37 100.0 41 TCCTCGATCG ..................................... TCAGTGCCGACGGCGCAGTTTGGGAACTCGTAGTATTTTCG 710548 37 100.0 38 AGTATTTTCG ..................................... AAACGTACTATCGCCTTGGGGTCTGGCTCTGGCGATAA 710623 37 100.0 44 CTGGCGATAA ..................................... CAAGAATTAGTGGCGCCAATCGCGAATAGTTGGCACACAGCGTC 710704 37 100.0 40 ACACAGCGTC ..................................... TTCTGAAAACGGCAGAAGCAATCCTGCGACGTAAATATGG 710781 37 100.0 39 GTAAATATGG ..................................... TTAGAACGCGCTGTCTTTTGCGGTGGAAGCGAACTTCTG 710857 37 100.0 41 CGAACTTCTG ..................................... AGACCACCCAACCCGCGCAGAGGAACGTCGGCAATTTGGAT 710935 37 100.0 45 CAATTTGGAT ..................................... CAGAAATTACTCGTTTGATGGAGGCCGGCGCGGCAGAATATATGA 711017 37 100.0 37 GAATATATGA ..................................... GTTACGGAGTACGAGAATGTCAATCAAGTTTTTCCGG 711091 37 100.0 41 GTTTTTCCGG ..................................... GGACGGACGGTGGCGGGTCGTCACGTCGGGGGTTCGCCTTG 711169 37 97.3 41 GTTCGCCTTG ....................G................ GTAGGGGTCGGTGCCGGTATTACGGTTGACCAGCTCGATCC 711247 37 100.0 44 AGCTCGATCC ..................................... CAGAACGTCAGTTTTGACCTCAAACACCTCGCGCATCACTTTCC 711328 37 100.0 40 ATCACTTTCC ..................................... ACGACCTTCTATCCGCGCTGGACATCAGCGACAATGTTCA 711405 37 100.0 44 ACAATGTTCA ..................................... TCACGGTTAACGGACGCCAGTACCTGATTCCGGTCACCCCTCCG 711486 37 100.0 42 CACCCCTCCG ..................................... CGGCAGAGGTTTTGCTCCGCAAGCGGTTCGGTTGTTTACTCG 711565 37 100.0 44 TGTTTACTCG ..................................... AGTTGGCCAGTTTCTCAGATCACCGTTTGGCCAGCCGCTGCTAG 711646 37 100.0 40 CCGCTGCTAG ..................................... GTAGGTATGGTATTGTTGCGAAAAGCCGCAAACCGGCTCG 711723 37 100.0 40 AACCGGCTCG ..................................... TTGGAAGATTGAACAGCGAAAAACAGACTTACGTAAACGA 711800 37 100.0 38 ACGTAAACGA ..................................... GCAATCGGCGCACCAGGCCGGCTTGACCGGCGGCGTCA 711875 37 100.0 40 GGCGGCGTCA ..................................... CCGTTGTCCGCCGCGCCGGAAGCGGCGGCGGGATCGGCGG 711952 37 100.0 41 GGATCGGCGG ..................................... CACGAGCGCTACATTCTGCGTCTGATCCACCACGATCCCGG 712030 37 100.0 41 ACGATCCCGG ..................................... GAATCAAACCCTTTCGCGTCATGAGCGCCATGGCTCGTCGC 712108 37 100.0 37 GGCTCGTCGC ..................................... GTTGTTGCGTAGTGTTGGGAGTAGCATTCTTAACTAC 712182 37 100.0 41 TCTTAACTAC ..................................... CGGTCGTTGATGTCGACCACCAACGTCAGGGGCGATCATGG 712260 37 100.0 38 GCGATCATGG ..................................... CCGGATCGCGCCCCACTCTTGGGGAAAACAAACTATAT 712335 37 100.0 41 CAAACTATAT ..................................... GGTTCCAATGTCGTGTGAACACGCCGTCTTTGCAAGCATGG 712413 37 100.0 41 GCAAGCATGG ..................................... GTGCACGGCGGGGGTGGCGACCGCTCTCGCCAGTGCTGTGG 712491 37 97.3 41 AGTGCTGTGG ................-.................... TCCGACAAAGCTGTGCGGCAGGCGGTGGTCGGAGTATTGGC 712569 37 100.0 41 GAGTATTGGC ..................................... GTCACGAGTTACTGTCGACGAAGACGTACCAGACATCTTCG 712647 37 100.0 40 GACATCTTCG ..................................... TGCATGGTTGGCACGCCACATTACAAGTCTTGCGCATTAT 712724 37 100.0 37 TGCGCATTAT ..................................... CTGCTTCGCGCGCCCATGGCGCCTCGTCATCGCGTAT 712798 37 100.0 41 CATCGCGTAT ..................................... AGAAAGACCGGTAACCCGCTTGCCTTGTTCGACATTTTTGA 712876 37 100.0 37 ACATTTTTGA ..................................... GAATCGCGGAATCGGTTTTTCTGTCGCGCAATGCTCG 712950 37 100.0 37 GCAATGCTCG ..................................... CAACCACCGCGCGGCTCGGGGAAATCAATCGCGTTGC 713024 37 100.0 39 ATCGCGTTGC ..................................... AGACGAGGAATTGTCAGCGCTGGCCGCGCTGATCGCTGC 713100 37 100.0 40 TGATCGCTGC ..................................... TCACTGTCGCGATGGCAGCACTGAGCTGGCGCTTCGATCT 713177 37 100.0 39 GCTTCGATCT ..................................... TCGTTGCCGTTCCAGCTACCTAATCCGTTTGCACCGTCG 713253 37 100.0 42 TGCACCGTCG ..................................... CGCTTGGGTGATGAGTGGGTAACGCGGCAGGACGTGGGAGAA 713332 37 100.0 39 CGTGGGAGAA ..................................... TTATGCAACTCAAGCAATTCCCCGCATTGCGGGAATTGC 713408 37 100.0 40 CGGGAATTGC ..................................... GTACCCGCACCTGCCAGTAAAGAGTAAGTACCGCCGTCAT 713485 37 100.0 43 CCGCCGTCAT ..................................... TTGCGCTTGCAGTGGCGGAAGAGTTGGTCGAGGAACGTTGCTG 713565 37 100.0 42 AACGTTGCTG ..................................... AAACACAGACGAGGCGGCGGTCGCGTTTTTCCGACCGTTCTT 713644 37 97.3 40 GACCGTTCTT .....G............................... AAAAGGAGGAGCGGGAGGCACTGACGGCCTTGCAAGCCGC 713721 37 100.0 41 TGCAAGCCGC ..................................... TCTGGGCCGGCAAGCCGTCGAAGGTACGGCTGCCGGAAGGT 713799 37 100.0 41 GCCGGAAGGT ..................................... AGTATAGACGTAAGAAGCAATCAAACAAAAAAAGGAGTTAA 713877 37 100.0 44 AAGGAGTTAA ..................................... CCATCCCGATACCGTCAGAGCCGGCGGCTGAATAACAGCAGGTG 713958 37 100.0 41 ACAGCAGGTG ..................................... CGGGTTGGCAACCGTTCCGCCGCTCGGGCACACTCGCAGAG 714036 37 100.0 40 ACTCGCAGAG ..................................... TTGGCGAAACATTTGTCGTTGGTCATTTGTCACAATTTCA 714113 37 100.0 44 CACAATTTCA ..................................... GTGGATGCTGCGAAGCACATTCGTGGTTGGATGAAGCATAAGTT 714194 37 100.0 39 AGCATAAGTT ..................................... ATAATTTTCACCTGTGTATCAAAATCAACCCGCTTTAAC 714270 37 100.0 37 CCGCTTTAAC ..................................... CGGGAGAAGTATCGCGAATGAGGAACCGAAATATTTA 714344 37 100.0 40 GAAATATTTA ..................................... CCAGATTATCCAGACTAGCGAGGGCTTGATTGTCATTCAC 714421 37 100.0 44 TGTCATTCAC ..................................... GCCGATCTGCTCACGCATCACCAGATGCGCCGCAGTGCCGCTTG 714502 37 100.0 40 GTGCCGCTTG ..................................... GAGGAAAAAATGTACCTTGTTAACCTGTACGGCGATTTTA 714579 37 100.0 45 GGCGATTTTA ..................................... TTGCAACAATATCTCATTCCGGCGGTTGCGCTGTTGCACCAACCG 714661 37 100.0 41 GCACCAACCG ..................................... TTAATTGGTCCCGGTGGACGAATGAAGACGACTCCGGATTT 714739 37 100.0 42 CTCCGGATTT ..................................... AGATTGTCTGCGCGGAAGAAGGCAGCGAACAAGATCAGATTT 714818 37 100.0 41 GATCAGATTT ..................................... TGAATTACCGTTACGTCTCTATCATACTACGCTATTTGCGG 714896 37 100.0 41 CTATTTGCGG ..................................... GTCACGTATTGCGCATCTGCATTTGGTATGACCGTCACCGA 714974 37 100.0 41 CCGTCACCGA ..................................... CGATTACGGCGGTGGCGGCGAATGATCGCGGCATTGTTGAC 715052 37 100.0 42 CATTGTTGAC ..................................... TAATAGTAGTCGCCGGTCGGCGTAATGACGCGCAGATAGTAA 715131 37 100.0 42 CAGATAGTAA ..................................... ACAATTAGCAGAGGCGCGAAAACAACAAACGGAAGTAGTTAC 715210 37 100.0 40 AAGTAGTTAC ..................................... CGCTAATATTGGAAAATACAATAATCGCGATATAGAGCAG 715287 37 100.0 44 TATAGAGCAG ..................................... AAGTTGTCGGGTTGGGCAACGATCCTGACAACCTTCGCTTTTCG 715368 37 100.0 46 TCGCTTTTCG ..................................... CCAAGAATAAGATTGTTCGTGTACGCCGGCAATTGCATATATGCAA 715451 37 100.0 42 ATATATGCAA ..................................... GAATAACCGGTGTTTTTCCTAGAAAAAAAGCCCTGACATTTT 715530 37 100.0 39 CTGACATTTT ..................................... GCAAGCAGAAGCTGAGCGAATGGCGCGATTGCAAGCAGA 715606 37 100.0 42 TGCAAGCAGA ..................................... CGAAGTTCTTGCGCAACAACGCCCGATTCATCTGTTGGGCGG 715685 37 100.0 42 TGTTGGGCGG ..................................... CGGTGTTCTCTCCGTGCATCCAGGTCCAGTTGACAACGTGGA 715764 37 100.0 44 ACAACGTGGA ..................................... TCGCGCAATCGGGAAATGCCAGCCGGCGACTGCACAGGTTTTGA 715845 37 100.0 41 CAGGTTTTGA ..................................... ACCCATTTATTGTGGCCCTCACGGACCACCCAGATGAACTC 715923 37 100.0 41 AGATGAACTC ..................................... ATACGCGCTTACTCATCAATTCGAGTTGTTGATATAACTCT 716001 37 100.0 41 ATATAACTCT ..................................... GTGCTGCAAAGAAGCGCGATAAGGATAAAAAGATAAATAAT 716079 37 100.0 42 GATAAATAAT ..................................... GGCGAAAATGCGTGGGATGATATGGCGCGTCTCTGTCGTGCC 716158 37 100.0 38 CTGTCGTGCC ..................................... CCTTTACCGACGATCATTACCAAAACCCGTTGGCGTCT 716233 37 100.0 39 GTTGGCGTCT ..................................... CCGCACTGACGGCAACGGCAAGCGCGCAGTTACTTTCAT 716309 37 100.0 40 TTACTTTCAT ..................................... GCCCGTTCGCAACCAGGAAGGAGGCGATTGCGGACGCAAT 716386 37 100.0 41 CGGACGCAAT ..................................... CGAGTACCACATTGTCGGGGATGAGACCCGCGCGAGGGTTG 716464 37 100.0 40 GCGAGGGTTG ..................................... CGCAGTAATCTGTGCTTCAACGATCTTTAGCTGATCCTTT 716541 37 100.0 42 CTGATCCTTT ..................................... AAACCAAATGACCGGCGGCTTCAACACTTACCGTATTGGCCA 716620 37 100.0 39 GTATTGGCCA ..................................... TGGATTACAACCGCTGGCTGGCGGCGGTGTGGGCCGTTC 716696 37 100.0 42 TGGGCCGTTC ..................................... GTAGACGAGGCCGATGACGGCGACTGGCTGTTGTATCTTTCG 716775 37 100.0 44 GTATCTTTCG ..................................... TTGGTGGATCAGCGCAATATTAAGCGTTCGCCGCTCATTTACCG 716856 37 100.0 42 TCATTTACCG ..................................... CTATAGCATAGGAGGCGATCTATGGCAACACGCGAAGAGTGG 716935 37 100.0 42 CGAAGAGTGG ..................................... CAACGCGAATGCCGACGGTGGCGAGAATGGCGGATAGTGTTC 717014 37 100.0 39 GATAGTGTTC ..................................... CCGTCTCGACGGTGAACGACCACTCCTGAATACCGTTGA 717090 37 100.0 42 ATACCGTTGA ..................................... CGAAGAGGTGTTGAAAGCGGCGGGGATTGAGGTTCAATTTAG 717169 37 100.0 41 TTCAATTTAG ..................................... CAATAAGATAATGGATGCTGACGCGCGAAGCGGGATTGGTC 717247 37 100.0 42 GGGATTGGTC ..................................... CCACGTCACAGCGACAGATCGTGACATCGACGGTATCGGTGC 717326 37 100.0 40 GTATCGGTGC ..................................... CGACAGCCGGCGCGGTTGGCATCGCGGCAGCGCTTGTTGT 717403 37 100.0 40 CGCTTGTTGT ..................................... GGATAAATGCGTATTTTAGATAACAATCCAGCGCTGTTTG 717480 37 100.0 42 GCGCTGTTTG ..................................... GTGACTTTGAGGCCGGCTTACTTCGGTTTCGCGCCGTCGCCG 717559 37 100.0 41 GCCGTCGCCG ..................................... CAGACGCGCCATCGCCCCCGCCGAGCGCGCCGAGCGTAGAG 717637 37 100.0 38 GAGCGTAGAG ..................................... GAAGCAAACGCAGGTCGAGCAAGGCACGCAGGTTGAGA 717712 37 100.0 43 CAGGTTGAGA ..................................... CGGGGAGTGGGTCGAACTCCCCGGTGAATGGTGGCGGTTTGAG 717792 37 100.0 41 GCGGTTTGAG ..................................... ACGTGGCCGGAAACCATCCGCCGCGTTATTCTCGGCGCGCA 717870 37 100.0 41 TCGGCGCGCA ..................................... GTACCGACGTAAGTTATCTACGTCCATGGCCCACGTGTAAT 717948 37 100.0 41 CACGTGTAAT ..................................... CACACAACCAACAACGCAGAAAGGTGGGGAATGGTAGTGCG 718026 37 100.0 39 TGGTAGTGCG ..................................... GCCAGCACTTTTTGCCGACCTTGAAAGCTTGGCAGGTAC 718102 37 100.0 40 TGGCAGGTAC ..................................... CTGGCCAACGTCCGCAACGCAGCCCGACAACGGCGATAGT 718179 37 100.0 45 CGGCGATAGT ..................................... TCAGACAGTGTGCGCACTGTTGACAAAAAATTGCTCGAAAATTGC 718261 37 100.0 42 CGAAAATTGC ..................................... GGCGAAAATGCGTGGGATGATATGGCGCGTCTCTGTCGTGCC 718340 37 100.0 38 CTGTCGTGCC ..................................... CCTTTACCGACGATCATTACCAAAACCCGTTGGCGTCT 718415 37 100.0 39 GTTGGCGTCT ..................................... CCGCACTGACGGCAACGGCAAGCGCGCAGTTACTTTCAT 718491 37 100.0 44 TTACTTTCAT ..................................... TTTTCGAGTTGAGGACGACACCGAATAAATAGATAAAAATACAA 718572 37 100.0 42 AAAAATACAA ..................................... ATGATGTGAGCAACGAAGGAAATCCAGCAAAGAAAGGAAGGA 718651 37 100.0 42 AAAGGAAGGA ..................................... AACAAGAAAGGAGTTAACTATGAAGAAGATCAACTGGTACGT 718730 37 100.0 ACTGGTACGT ..................................... TAGCACAAAT ========== ====== ====== ====== ========== ===================================== 116 37 40 GTTTCAATCCCCTCGCGGGGATTTTGGTTTTTTGAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.05%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-10.30,-11.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [46.7-50.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [326,12727] Score: 0.18/0.18 # # Final direction: R [0,5.46 Confidence: HIGH] >NC_012032 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 718890 36 100.0 42 AGGCCCCCGG .................................... TCGACGGTTTCTCGCCGCGCTGCGTTGTCGCGTATTGCAACG 718968 36 100.0 46 TATTGCAACG .................................... TGGTTTAAACAGTTAGGCGCGAAAAGCACGGGACGGTTTAGTAGTG 719050 36 100.0 46 TTTAGTAGTG .................................... ACAACGCAGCGTTTTCATTGCGCAGTTTGTGCAGCGCACTGCGTAG 719132 36 100.0 43 CACTGCGTAG .................................... GCCAAACCAGTAACCAAACAAGAAAGGAGAACAGAAATGTACG 719211 36 100.0 45 GAAATGTACG .................................... GCGGCGCAAATGCACTTTGTAATTAGGCAACTCGAATACGTAGTG 719292 36 100.0 41 ATACGTAGTG .................................... CAATAAAGAGCATGGTATCGTCAGGCGCGCCGTGCTCAACG 719369 36 100.0 39 GTGCTCAACG .................................... ATCCTGTTCGCGGTCTGGCGCAAACAGATGGAGATCGCG 719444 36 100.0 43 GGAGATCGCG .................................... GCCGTATGCGTCGATAACCGATGCAAACAGTAGTAATTCCCCG 719523 36 100.0 44 TAATTCCCCG .................................... TGGTATTGACAACGTGACACGAGTATGCTATAGTATAGTCAACG 719603 36 100.0 44 ATAGTCAACG .................................... ACACCGGAACCCACTGTTTTGTTTCCGGGTCTTGCGCGATCCAG 719683 36 100.0 45 CGCGATCCAG .................................... ACGCTACAAGCAGTGTCTACAGTACATACCGCGCTGTCCACAACG 719764 36 100.0 44 GTCCACAACG .................................... ATAGGTGGACGGCGCCGGTGGGTGGACGGCGGATATTATGTGGG 719844 36 100.0 44 ATTATGTGGG .................................... TGACCCAACCCGCGCTGGCTTTCGCCTCCAGCGCCTTAATCGCG 719924 36 100.0 43 CTTAATCGCG .................................... CTGGCGTTTCGATTGATATTGAGGGGTTTGCGTTGTTCGGAAG 720003 36 100.0 40 TGTTCGGAAG .................................... ACGAGGGAAGGAAACGAAGCGAATGTTTCGAGCATGTTAG 720079 36 100.0 46 AGCATGTTAG .................................... CGCCCGGCTCGGCGAGCGTCCATGGATCGGCAGGCATAGCAGGAGG 720161 36 100.0 43 TAGCAGGAGG .................................... GGAATACTTCATGGCGTATGAGGGGAGGTAGCATGAATTACAG 720240 36 100.0 46 TGAATTACAG .................................... TTACTGTCGCCGTCGACAGCGACGGCGATATCTACGAAATCGCGCG 720322 36 100.0 40 AAATCGCGCG .................................... CAACTTACATGGGCATGCTCGAGCCGCCAGCTTTATGGCG 720398 36 100.0 42 CTTTATGGCG .................................... ACACAGTTGCCGGTGTCGTTCGGCTCATTTTTGAAACTTGGG 720476 36 100.0 43 GAAACTTGGG .................................... GTACCTGCTCGTGCTTTGGGGCGTGACAGGGTTGCTTGCTGCG 720555 36 100.0 42 GCTTGCTGCG .................................... ACCAATTGCGTCGATCCGGCTCACGACTGTGAAACCATCCGG 720633 36 100.0 40 AACCATCCGG .................................... GGAAAACGCGGGAGTGATCCCGCGACGAGTAACATCGTTG 720709 36 100.0 45 AACATCGTTG .................................... CGACATGGCGTGGCGAGTAGCTATCAGCATTCATGCAACGTTAGG 720790 36 100.0 40 CAACGTTAGG .................................... GTAGGGTATCGCTGGGGGAGACCGCAGCACATCGTTGACG 720866 36 100.0 42 ATCGTTGACG .................................... GCGACAATTGACACCGACGGAACGGAGCGCGGTTGCCGAAAG 720944 36 100.0 42 TTGCCGAAAG .................................... CTGCTTCATCCGCTTTTCCTTCCGCCTCCGCTTCCGCTATCG 721022 36 100.0 40 TCCGCTATCG .................................... TCACGCAAATAGTCGCTCGGCGACACGCTGAAACGCCGGG 721098 36 100.0 41 AAACGCCGGG .................................... TTCGCAGCAATTGCGTCAATCAGGTCGTCACGCAAATCGCG 721175 36 100.0 44 GCAAATCGCG .................................... CATCTGCTCAGCGCAGTTCAGCATACTGCGCAGCAGCGAGCAGG 721255 36 100.0 41 AGCGAGCAGG .................................... TTACATTGGGTACCAACAGAGGCCTTTTTGCCGTGGCTACG 721332 36 100.0 45 CGTGGCTACG .................................... CCCCAGGGGTGGGACTATGTGTACGTCGGGACCCCTCTTATGAGG 721413 36 100.0 41 TCTTATGAGG .................................... TCGCTTGTTCACGCTGTGCGCGAGCAAGAAGGGTCTTTGTG 721490 36 100.0 44 GGTCTTTGTG .................................... AACATACACAACGAAAGGGGGACAGTATGTCGTACTTTGAACTG 721570 36 100.0 46 CTTTGAACTG .................................... CCACACCACCACCACCAACTTGTCAACACCCTTACAACAAACAAAG 721652 36 100.0 43 ACAAACAAAG .................................... CTGATCGCGTGGTCGAGCGATGGCGCAAGGCGTCGATCTCGAG 721731 36 100.0 44 CGATCTCGAG .................................... CGATCCGCATTACGCAGATCGAACATGCGTTTGCGTCCTAACGG 721811 36 100.0 39 GTCCTAACGG .................................... ACCCTGAACCACACTACCGACCCCTTCTCTACGACACGG 721886 36 100.0 44 TACGACACGG .................................... CGATGTGATGATCGCGTTCGGGAAGGTGTAGGTGGTCGTACCGG 721966 36 100.0 44 GTCGTACCGG .................................... CCAAACACATCAAAAATTGCCTCCGTTGTCATAAAAACATTGTG 722046 36 100.0 40 AAACATTGTG .................................... TTCCATACAATAAGAAGTAACGCGAACGCAGGAATGATGG 722122 36 100.0 41 GGAATGATGG .................................... TCACGAGGCGCTGGCGCTGGCCAATGCGCTGGCGCAGACGG 722199 36 100.0 41 GCGCAGACGG .................................... CTGTGAAATAGTTTTCCCTGAAACAAATTGCAAGAGATGGG 722276 36 100.0 44 AAGAGATGGG .................................... GGAGGAAGGATCGCAGTGGCACAAAGAAATCGAACAGGGCTGGG 722356 36 100.0 41 CAGGGCTGGG .................................... ACACAATGTCAAGCGCCCACGCGACGCGCTGCTCGCTGACG 722433 36 100.0 40 CTCGCTGACG .................................... AAACTTAGCGGTAGTTGGCGATCGCGTCCGCGATCGCTTG 722509 36 100.0 39 CGATCGCTTG .................................... CAGCATTTCCATCATCTCTCACCTGCCTGCCGTTTTGGG 722584 36 100.0 42 CCGTTTTGGG .................................... GAAGAACACAAAGCGGAGCGAAGAATTGACACAGTTGTAGGG 722662 36 100.0 45 AGTTGTAGGG .................................... GAAAACTGTTCATATAGCGACGCTGTTAACTTAAAAGAGAAAGTG 722743 36 100.0 42 AGAGAAAGTG .................................... CGCCACTTAATGACACGCTTATCGGCGTACAACAGCGTTGCG 722821 36 100.0 45 CAGCGTTGCG .................................... GGCGTACACGCGCGTCGCCATCTGGTCGATCCCTTGTGTCACGGG 722902 36 100.0 42 GTGTCACGGG .................................... GATAGATCGCAAAACGCGACGAGCAAGCGGTTCGGATAGCGG 722980 36 100.0 42 CGGATAGCGG .................................... TGTGCCGGCAAGCGACGAAAAGGGACTGTATCTTGTTTCAAG 723058 36 100.0 43 TTGTTTCAAG .................................... GTTTCAGTACGACAAGATGGATATTGACACGTATATTTTGCGG 723137 36 100.0 42 TATTTTGCGG .................................... TTCTTATCCGCCGTTGGCAGCGCGAATTACTTGCTGTTGACG 723215 36 100.0 38 GCTGTTGACG .................................... TGCGCTACACGCTGTGCTGCGGTAAGCGGAGCATCAGG 723289 36 100.0 42 GAGCATCAGG .................................... CGGGCGCAATTGCGCCCGGGAGTGTACGTGTGGGTGGTCCGG 723367 36 100.0 44 GGTGGTCCGG .................................... CGCGCTTGACGAAATGTTATCGCAGCAAATCGCTTACTGTTCGG 723447 36 100.0 42 TACTGTTCGG .................................... ACAGAAGGGGTCGATGAAGATCAAGAGTAGTCGTGTTGTAGG 723525 36 100.0 37 GTGTTGTAGG .................................... GCACTTGTCTGCGCACTGATGTAACTCTCTCTAGTCT 723598 36 100.0 45 TCTCTAGTCT .................................... AAAAACGGGTTTGTAAGCGGCGCAAATGCACTTTGTAATTAGGCT 723679 36 100.0 39 TAATTAGGCT .................................... GTAGACGTACATACCGCGCATGGTCGTATGGAGCAGACT 723754 36 100.0 45 GGAGCAGACT .................................... GTGTGCGCCGTCAGCACGATCTGCCGAAATGCCGGCTCCGTCTCT 723835 36 100.0 43 CTCCGTCTCT .................................... CAAGCTAGGATCATACCTCGTCCGGGCTGCGCGTGAGGTAGCT 723914 36 100.0 45 TGAGGTAGCT .................................... AGAATTAGAACTAGCGAATGCAGAGGAGTTGTTCACGGATTAAAT 723995 36 100.0 45 CGGATTAAAT .................................... GGATTAGCATTCTGTGGTGGCGTGGATCGGTTGCACGGCGTTGCT 724076 36 100.0 44 CGGCGTTGCT .................................... TGATTATCCGTATCCGGTGACTAAAATACCGGACCAACTCTCGT 724156 36 100.0 46 CAACTCTCGT .................................... GCGCAATCTAAGCGCGCAATCTAAGCGCGCAATCCAAGCGCGCAAT 724238 36 100.0 43 AGCGCGCAAT .................................... TGTTAGACAAACCCACCGGATTGCAGGACTACGACGCGATCCT 724317 36 100.0 41 ACGCGATCCT .................................... GCAGATAATAACGGTGAGGTTGAAGGATTTATCTTTCGGAT 724394 36 100.0 42 TCTTTCGGAT .................................... GACTTTGAACAACATTGTTTTCCTCCTTGTCGTTGCAGTTTT 724472 36 100.0 43 TTGCAGTTTT .................................... GAATGGTTGCCAGCCGGGCACGTACTTAATCATAGTGTACGTT 724551 36 100.0 39 AGTGTACGTT .................................... GTAGAGGTTGCGTACACGCCGCAGCGCACGTATACCCCT 724626 36 100.0 43 GTATACCCCT .................................... AGCTACGTGCTAAAGGGTTACAGAGTTACCACGTGTGTATCGT 724705 36 100.0 41 TGTGTATCGT .................................... CGGCAAGCAATACAGTTGCACAGCAAATTGTGCAAGCACAT 724782 36 100.0 40 GCAAGCACAT .................................... GCAAGGCGGGTAAAGAGGTCGATGAGGCGCTGCATTCCGT 724858 36 100.0 43 TGCATTCCGT .................................... CGACAAGGTATTTTTGGTCGGCCCTTTTCTTACTCAGAAAAGT 724937 36 100.0 41 TCAGAAAAGT .................................... TCAGATTGTGGCGCGAGTAAACACAGCGACAGACGGTGCGT 725014 36 100.0 42 GACGGTGCGT .................................... GAGCAGGCGTGCGCCTGCTTCATCGAACGCAATTTTCGAAAT 725092 36 100.0 39 TTTTCGAAAT .................................... CCACTCGGGCTCCCTCGCGGAGTGCGTCGAGTGGGCGAT 725167 36 100.0 43 AGTGGGCGAT .................................... ATCAAGTCGCTAACAAGAGGAGGGAAAAACCATGTTTACGTTT 725246 36 100.0 41 GTTTACGTTT .................................... TCATTGTGCATCCCCCGCCGTCAAGCCGTTGTGCCATTGCT 725323 36 100.0 42 TGCCATTGCT .................................... CTCCTCTCTCTACCGCGTTGCTCGAGTCGCTCGACTGGCGCT 725401 36 100.0 42 GACTGGCGCT .................................... TCGGATTGCATCGCTTACGCAAACAAGAGCCTGCATTTCCGT 725479 36 100.0 44 GCATTTCCGT .................................... GGAATGGGTTGGTACGCGTGAAGGCACCCAACCCCATTCTACGT 725559 36 100.0 40 CATTCTACGT .................................... CGCAAAATGACACTAAGCATTGGAAAGCGGAGAAATGCAT 725635 36 100.0 40 AGAAATGCAT .................................... TGACTGTCCAACACCGTTTCCAACCAAAAAGTACCCTCCT 725711 36 100.0 45 GTACCCTCCT .................................... TCAACGACGGCAGCCGGCAGCAATGCGCCAAATTGGGGGGAGCGT 725792 36 100.0 42 GGGGGAGCGT .................................... GGAAGGTGCATTGGTCGTAGGCTGGTTAACCGCCTACGTGAT 725870 36 100.0 44 CCTACGTGAT .................................... TTACATGTCCAAGATCGAACCCCCGGCCCTATGGCGGCTTGAGT 725950 36 100.0 46 CGGCTTGAGT .................................... CCAGCCGGCTGACGCAACAGCACTACAGCCGCGAGGGGCTGGTGTT 726032 36 100.0 44 GGCTGGTGTT .................................... AAAAGGGCCGTATCTCAGCAATGGTGATAATTCACAATATGAGT 726112 36 100.0 39 CAATATGAGT .................................... CGGCGCAGCGGCAGAAGGAACGGTTGCGCAAGCAACAAT 726187 36 100.0 44 AAGCAACAAT .................................... CCTCAAGTAGCTGGTTAGCGTCGCCGGTGCGCTTAAACTCGTTT 726267 36 100.0 44 AAACTCGTTT .................................... CTCCGCGCATTCCGCCCGCGCCGGATTGCGGAACACGTTGTGCT 726347 36 100.0 42 ACGTTGTGCT .................................... CGGATCGGGATGAGCATTAGCGGATGGATGCAATGTTTGCCT 726425 36 100.0 46 ATGTTTGCCT .................................... AGGTACTATGCAACCAACTATTACGTACAATCCACAAACGTATACT 726507 36 100.0 40 AACGTATACT .................................... GCGTATTCACGCGAGCAACGTTCCAATTCGCCGGTTTGTT 726583 36 100.0 44 CCGGTTTGTT .................................... CTACCCTTTCCAACTATTGTACATAGCGCCCAAATACCGATACT 726663 36 100.0 43 TACCGATACT .................................... GAAGAGGCTCGCTCGCTCGACGCCGAAGAAGCAATCGAGTGGT 726742 36 100.0 45 ATCGAGTGGT .................................... GTTGGCGATGCTGCTTTTACCACAAGTTCAAATGTGACCTATGAT 726823 36 100.0 39 GACCTATGAT .................................... CTCAGCACATCGTCAACGGGTAAACGACGTGTTTTTGAT 726898 36 100.0 42 TGTTTTTGAT .................................... CAAGCTTAGGAAGGACGCGCTGCACTTGTTGAATGTAATTGT 726976 36 100.0 41 ATGTAATTGT .................................... GTACATCGCGTATGAGCGTTCCGTTCTTGGCTCGTAATTTT 727053 36 100.0 41 TCGTAATTTT .................................... CGATAGAGCGAACAATGGTTTCGGCTAGCGCGCTCCGTCCT 727130 36 100.0 42 GCTCCGTCCT .................................... GTAGTCCGCCGAGGTGCGTGTCGAGGCGGCGAGGTCATAGCT 727208 36 100.0 41 GGTCATAGCT .................................... CAACAATCTCTATCTTTATCATTACACCACAACCTGTTTGT 727285 36 100.0 43 ACCTGTTTGT .................................... GCCGACTTTAGCGTGTCGGAATGCCTCAATCATACGCGATGAT 727364 36 100.0 42 ACGCGATGAT .................................... TTTGTACGTTATTTGATACGTCAATTTATGTTGATACGCTGT 727442 36 100.0 38 GATACGCTGT .................................... AGACAGGATGACTACTCGCAGGAGGGATGTTATGGAGT 727516 36 100.0 43 GTTATGGAGT .................................... CCGGTACTTGCATTAGTTCGGGAATGACCAGCGCAATAATCAT 727595 36 100.0 43 CAATAATCAT .................................... GTACCGGATTGGGTAGTCGGTCACATCCGGCGTCTGCTGGAGT 727674 36 100.0 43 CTGCTGGAGT .................................... GGGGCAGCAACGAAGCTGCCTCTCAAATTTTTATTTTAGCGCT 727753 36 100.0 40 TTTTAGCGCT .................................... GTTGTAAAAAATTACCGCCGGCGCGTTTACTAATTTCACT 727829 36 100.0 44 TAATTTCACT .................................... ACCAGATCGCGCAGCGGATCGGCGCGGTGCTGGAGGCGTTCGGT 727909 36 100.0 43 GGCGTTCGGT .................................... GGCAAGATTGCGGGTCGTTAACCGGCGACCCGTCGGTGGCGGT 727988 36 100.0 42 CGGTGGCGGT .................................... GGGGCGCGGGTGGTGCTAAATAATACCGGTCTCTATACGTGT 728066 36 100.0 43 CTATACGTGT .................................... TGACGACATGCATGATGACGGCATAGATTGACATTACTCTTTT 728145 36 100.0 42 TTACTCTTTT .................................... GTATCAGCCGGCCCGCCCTCGTGATGTTGCTCACTGCCTGGT 728223 36 100.0 41 ACTGCCTGGT .................................... CCGCTCCCCTTTGCATGCCTTGAGTTCGAGACATATGGAGT 728300 36 100.0 47 CATATGGAGT .................................... ATCGAGCAGTGCCGCCGCGAGTGCAGGGGTGTCGGCGTCAATGACGT 728383 36 100.0 44 TCAATGACGT .................................... CCGCCGGAAATTGATGTTCCCGTGATAGTCGCAGCATCAATCGT 728463 36 100.0 41 CATCAATCGT .................................... TACAGTGACTACGTATGTCACAAACGAAAGGAGGTGATACT 728540 36 100.0 41 AGGTGATACT .................................... ATAGTTTTGTCAAGACGCTCTCCGAAATGTATCGTGATGGT 728617 36 100.0 43 TCGTGATGGT .................................... GAACCTGACCCCTGGGTGTGTGGTCTTCGCCTTCGTTGACCAT 728696 36 100.0 41 CGTTGACCAT .................................... TTGATACTTCGACCCTACCTATTCCGCACATGCTGATCGAT 728773 36 100.0 44 GCTGATCGAT .................................... CTAAGAAAGACGGCTGGGCAAAGGTGAAAGGGTTTTCCCTGGAT 728853 36 100.0 45 TTCCCTGGAT .................................... CTGCTGGATCAACCGGCAACGGCACGCAAGACGCTGCTAGTTGTT 728934 36 100.0 44 GCTAGTTGTT .................................... GTACGACAATGCGCTGCGGTGCAAACGACGCTGCGTTAGATGTT 729014 36 100.0 40 GTTAGATGTT .................................... ACAGCCCAGCGCGCTGACGGTGTCACAACACTGCATTATT 729090 36 100.0 43 CTGCATTATT .................................... GTACTACTCTGTGCCGCAGCACTGTGGGCCGCGCTTAGACGAT 729169 36 100.0 42 CTTAGACGAT .................................... CCGAGGTTAAACATTGTCTCGGCGTACTGTAGCAGTTGGTTT 729247 36 100.0 41 CAGTTGGTTT .................................... TCCACGTTGACCCGTCGAGCGACGTGCCGAGATAGATTGAT 729324 36 100.0 44 ATAGATTGAT .................................... AAAAATTAGCGCGCCCGTTATATACCGGCGCGTTGTTGTTTAGT 729404 36 100.0 42 GTTGTTTAGT .................................... CCACCAGCGGGCGACGGTTTCAAGTACCTCGCCTGCCTCCGT 729482 36 100.0 46 CTGCCTCCGT .................................... TGGAATGCACCATCGGTAATCCAAGTTCGACGCGGGCGATGTTGGT 729564 36 100.0 39 CGATGTTGGT .................................... CGGATGCACCGCGCCACCCATATAGTAAGGAATTCGGAT 729639 36 100.0 42 GAATTCGGAT .................................... ACACACCGTGACTGTTTGAAGGACTATACGTAAGCTGCGACT 729717 36 100.0 41 AGCTGCGACT .................................... TTAAGTGGCGACTTGAGTACGTCGCCTTCCCATAATAACCT 729794 36 100.0 44 ATAATAACCT .................................... CGACGATCGTCGAGACGATTGCCTCCACCAGCGGCGCAAAGGCT 729874 36 100.0 40 CGCAAAGGCT .................................... GCTGGCAAGGTATACGCAACCCTCCACCTGAAAGATGACT 729950 36 100.0 41 AAAGATGACT .................................... ACAAAGCCCCGGCGGTATCGCCGGGGCTTTTTGTATTGTCT 730027 36 100.0 39 TGTATTGTCT .................................... GGAGCTAACGCTTCCGACAGAAACGATCCAATTTTGAGT 730102 36 100.0 43 AATTTTGAGT .................................... ATTTTTGAATGGTCGAGCGCCAGTCGAGCAACGCGGTAGAGGT 730181 36 100.0 41 CGGTAGAGGT .................................... GGGTATACGTTACGTTGGCTTCGAGACGAAACGGGAGCGAT 730258 36 100.0 43 CGGGAGCGAT .................................... TTTCTCCTTTCTTTGCTGTCACCTTGTCCTTCGTCACTTCTAT 730337 36 100.0 44 TCACTTCTAT .................................... TTTCGTTTGAGGGGCGGCAACGAAGCTGCCCCTCAAATTTTTAT 730417 36 100.0 43 AAATTTTTAT .................................... AAACAAAAAAAAGTAGGCTGAGCGGTTGCCCACTCAGCCTATT 730496 36 100.0 45 TCAGCCTATT .................................... CCGTACCGCTCGGCGTATTACCGGTGGGCAGACATTCCGTATAAT 730577 36 100.0 39 TCCGTATAAT .................................... CAACTGGTCGCGGTGGGCCGGGGAGGACACTCACGCGGT 730652 36 100.0 39 CTCACGCGGT .................................... CCTCCACTTCCAACGTGGAGGAGATGCGGAGAGTGCACT 730727 36 100.0 39 AGAGTGCACT .................................... CCTCCACTTCCAACGTGGAGGAGATGCGGAGAGTGCACT 730802 36 100.0 45 AGAGTGCACT .................................... CCAGGCTCTGAGAAGCTCTACGCGCTCTACGACATCAACACAACT 730883 36 100.0 40 CAACACAACT .................................... GTGAGTACCGGGCGCAGCTAAAGGGGGGAGAGTACATCTT 730959 36 100.0 41 AGTACATCTT .................................... CGAGATTGTAGAGTTCCGCGGAACGGAACTCGGCTGGCTAT 731036 36 100.0 42 GGCTGGCTAT .................................... CAGCTCCACCTCTGCCGGGGTGAGGGGGCGCGGCAGCTTCAT 731114 36 100.0 45 GCAGCTTCAT .................................... ATATTATAATAATAGCATAAGAGATAAGAAACAGAAGGGAGAGAT 731195 36 100.0 40 AGGGAGAGAT .................................... AATTGTTGAATAGGAGGGAGTAAATGACCGTCAGTCTAAT 731271 36 100.0 TCAGTCTAAT .................................... ATACCACCCC ========== ====== ====== ====== ========== ==================================== 159 36 42 TTTCAATCCCCTCGCGGGGATTTTGGTTTTTTGAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-9.40,-10.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [48.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [9448,187] Score: 0.18/0.18 # # Final direction: R [0.45,4.87 Confidence: HIGH] >NC_012125 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3010604 29 100.0 32 NNNNNNNNNN GT..............A...........T TTTTCAGCCCTTGTCGACTGCGGAACGCCCCT 3010665 29 100.0 32 NNNNNNNNNN ............................. TGGCCGCGCAAATCGTCATGATTTAATTGCGT 3010726 29 100.0 32 NNNNNNNNNN ............................. TGGCGGGCCTTGTTTATCGCCAGCTTTTCAAT 3010787 29 100.0 32 NNNNNNNNNN .........................G... TGTTTTTATACAGTTTTACATGATACTGTAAC 3010848 29 100.0 32 NNNNNNNNNN ............................. TCCGGATGTCTCCCCCCGCGCCGTTTGAATAT 3010909 29 100.0 32 NNNNNNNNNN ............................. TGGAAGATATTGAAAGCGCCCAATCTTCCCAG 3010970 29 100.0 32 NNNNNNNNNN ...............A............. GGCATGATACGCGCTGACGAAACGTTATCCGA 3011031 29 100.0 32 NNNNNNNNNN ...............A............. TTTCACCCTGCCTGTAGATGCGAGGAAAATAG 3011092 29 100.0 32 NNNNNNNNNN ...............A............. TCCAACCTGAGCTTCAGGAGGAAGTGTCCAAC 3011153 29 100.0 32 NNNNNNNNNN ...............A............. CCAGTGTGCTGGAGTGAGGCGTGAATATGCAG 3011214 29 100.0 1 NNNNNNNNNN .A.............A............. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 11 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [16,98] Score: 0.18/0.18 # # Final direction: R [0,2.1 Confidence: HIGH] >NC_012034 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 151654 29 100.0 36 NNNNNNNNNN ............................. TAAAGAAAGAGGGAAAGTAAATGGCTTTGATAGATT 151719 29 100.0 36 NNNNNNNNNN ............................. CGCATTAAGCCACTGCAAGGTAGAATTTGACCAATT 151784 29 100.0 36 NNNNNNNNNN ............................. TGTATTTGGACTTTAAAATTGTCATTTGCAATATCA 151849 29 100.0 36 NNNNNNNNNN ............................. GTATGATACAAATGGTAATGAGATTAGATTGTATCT 151914 29 100.0 35 NNNNNNNNNN ............................. CAATATCCATATTTGCGAGGTGTAGATGGTGTCGA 151978 29 100.0 36 NNNNNNNNNN ............................. ACACTTAAAAAACTTAATGTAGCATTCATTGGTGGA 152043 29 100.0 37 NNNNNNNNNN ............................. TTTTATTTTCCTTGTTCGTGTATTAAAATCATATTCA 152109 29 100.0 37 NNNNNNNNNN ............................. ATTGAAAGCAAACCACAGATTGTGAATGCTGACCAAT 152175 29 100.0 36 NNNNNNNNNN ............................. TAAAATTTCTATATCGCTAAATATAACAAGCATATA 152240 29 100.0 37 NNNNNNNNNN ............................. ACGCTTCTAACGCAACTGTTTATGACGTTCATAGGTG 152306 29 100.0 37 NNNNNNNNNN ............................. TCAGTTAATCATTTTAAGCGCTTGGAGCCTTTTTGAT 152372 29 100.0 37 NNNNNNNNNN ............................. TTGAGAACTTTTATATTAACTCTATCAACTAACCCAG 152438 29 100.0 37 NNNNNNNNNN ............................. TTAAACCAACTAAGTATGCTAAATCAAAAGGCAGCGA 152504 29 100.0 35 NNNNNNNNNN ............................. ACAATCTTGTTGGAATATTTTCAAACAGAGCAACT 152568 29 100.0 37 NNNNNNNNNN ............................. AAGATGATGTAGCACCATATGTCGCACTTGGCTTTAG 152634 29 100.0 37 NNNNNNNNNN ............................. TGAAAACAAGAAAGATTTTAATATCAAGCCACTGGAC 152700 29 100.0 36 NNNNNNNNNN ............................. TCAACAATTTTATAGCCAAGTGGTGGAATTCCACCA 152765 29 100.0 36 NNNNNNNNNN ............................. CTATGATTATTATAACAAAATGTTCTGTTCCTTAAA 152830 29 100.0 37 NNNNNNNNNN ............................. CGTGTATCCCAAGTTTAACGCACATCTCATTCACCTT 152896 29 100.0 36 NNNNNNNNNN ............................. TTGATAATATATTTGACTTTGCTCATCACTTTACAG 152961 29 100.0 37 NNNNNNNNNN ............................. GCACCAAACAAGCTCAAAATAGGTATTGCCTGCCTTA 153027 29 100.0 36 NNNNNNNNNN ............................. AGTGATTTCTTTATTGAGTTCCTTTTCTATTTCTGC 153092 29 100.0 37 NNNNNNNNNN ............................. ACAAAAATGGTAGAAAACAACAGAAAGTATAAATTGT 153158 29 100.0 36 NNNNNNNNNN ............................. CTTTGCAAAGATAAAAAATGCTGGTTGTGTGGAGGT 153223 29 100.0 37 NNNNNNNNNN ............................. CCTTTCTTTTTTTTTCTAACAGACCAGCCCTACTCGG 153289 29 100.0 38 NNNNNNNNNN ............................. GTTGTCAATGAAAATTGGTGCTGAGAAGTTGTAATATT 153356 29 100.0 36 NNNNNNNNNN ............................. GATTTCTGATGGAAATCAGGATATTAGCCTCTGGTA 153421 29 100.0 36 NNNNNNNNNN ............................. TGTCTGTTTCAAGGCGTCTTATAAGCTTATCTTCTG 153486 29 100.0 37 NNNNNNNNNN ............................. CTTTTTCTGTGCAGCATTGTAAGCCTGCATTACAATT 153552 29 100.0 37 NNNNNNNNNN ............................. GCTAAACCACCAGCTAATAATGTTGCTGTTGCCACAT 153618 29 100.0 38 NNNNNNNNNN ............................. GTGCATGTGCATGAGCCGATTCAGAAGGGTTAATCCCT 153685 29 100.0 36 NNNNNNNNNN ............................. TGAATTTCATGTATCATCAAATAATGTCTCAAATAA 153750 29 100.0 39 NNNNNNNNNN ............................. CTGGAAGCACAAGGGATTATAAAATACGAAATTGATAAT 153818 29 100.0 37 NNNNNNNNNN ............................. ATTCGCATTGATGAGATTAACAGAACAATGATAGCAG 153884 29 100.0 37 NNNNNNNNNN ............................. GTCGAATACTCTAAATCTTCAACTGTATTATAAAACC 153950 29 100.0 37 NNNNNNNNNN ............................. ATTCGCATTGATGAGATTAACAGAACAATGATAGCAG 154016 29 100.0 37 NNNNNNNNNN ............................. GTCGAATACTCTAAATCTTCAACTGTATTATAAAACC 154082 29 100.0 33 NNNNNNNNNN ............................. CAATTATATGCTTGTTATATTTAGCGATATAGA 154144 29 100.0 37 NNNNNNNNNN ............................. GCTTGAACTATAAACTGTTTTGTCGCTGGTGAAAGTG 154210 29 100.0 35 NNNNNNNNNN ............................. AATAATCAGTAGGGCCCATTATTTTTTCGCCAAAA 154274 29 100.0 37 NNNNNNNNNN ............................. CTCTATTTTTTTATTTTTAGAAGGGGGAGTAGTGATG 154340 29 100.0 37 NNNNNNNNNN ............................. CTTGCTAAAACTGTAGTTTTTTTGCTTGTAGGTGACT 154406 29 100.0 37 NNNNNNNNNN ............................. CAGGTAGGATATTTCCCTTTGTATGCTGCAGGTTATA 154472 29 100.0 36 NNNNNNNNNN ............................. TTAATTCAAGCAGTTTTTTAGAATTCTGTTCAAGCG 154537 29 100.0 36 NNNNNNNNNN ............................. TTTATAGAAAGCGCTATCATATCGATTGCGTGCAAA 154602 29 100.0 36 NNNNNNNNNN ............................. GCAGTCTTTGTCAAAAACTTTTATAAACATCTTCAT 154667 29 100.0 36 NNNNNNNNNN ............................. ACGGCAACTGAAGCAAAAGCAAGATATGATGAGTAT 154732 29 100.0 37 NNNNNNNNNN ............................. TTTTACTGTTTGATAATGTGCAAATATTCTGTATATG 154798 29 100.0 36 NNNNNNNNNN ............................. CGGAAAACAAATTTGTACTTCCAATCATTCTGCGGA 154863 29 100.0 36 NNNNNNNNNN ............................. CACAGATATTGTTGAACTTCTGGGAATTCTTTTGCT 154928 29 100.0 36 NNNNNNNNNN ............................. TCAGGTAAATTCGGAATTGTACCCATATCATAATCC 154993 29 100.0 36 NNNNNNNNNN ............................. GAAATATCCCTAAAACCATGTCAGAACTCTTCATTG 155058 29 100.0 36 NNNNNNNNNN ............................. CAAGAATCTTTATCTGCTCTAGTAGGAAGCTTTGCT 155123 29 100.0 36 NNNNNNNNNN ............................. CAAGAATCTTTATCTGCTCTAGTAGGAAGCTTTGCT 155188 29 100.0 37 NNNNNNNNNN ............................. GCTTTATCCGGGCAACTGGGATACTCAAACGATTGAA 155254 29 100.0 36 NNNNNNNNNN ............................. GCGAAAGTTTTGATTGATAAAGAAGGTACTTTATGG 155319 29 100.0 37 NNNNNNNNNN ............................. TGTTTCAATAATATTCGTTCCTGTCGTATCATAGTAA 155385 29 100.0 36 NNNNNNNNNN ............................. TCTATACCTTCTATTGAAATTAACATATTGTGACCT 155450 29 100.0 38 NNNNNNNNNN ............................. TGGTGGGTGGCATAATGATACTATAGTTACTGTTGAAG 155517 29 100.0 37 NNNNNNNNNN ............................. ATTGCAAAGTGTAACGTTAGTTTAAAAATATGTGAAT 155583 29 100.0 37 NNNNNNNNNN ............................. GGAGGTAAGACAGTTCAAGCTAGAAGACATTCAGGTA 155649 29 100.0 38 NNNNNNNNNN ............................. CTTTTTTCTTGCAATCTTCATATGTTGAGCTTTGGTAA 155716 29 100.0 38 NNNNNNNNNN ............................. CTTTTTTCTTGCAATCTTCATATGTTGAGCTTTGGTAA 155783 29 100.0 36 NNNNNNNNNN ............................. TTCGGACCAGTTGCCGAGCTGGAACGACATAGCAGA 155848 29 100.0 37 NNNNNNNNNN ............................. TAAGTTTTCTTGAATTCATTGCTTCACCACCTTTCTT 155914 29 100.0 36 NNNNNNNNNN ............................. AAACAAAGGAGATTCAGCAACAGATTGAAGTAGTAA 155979 29 100.0 37 NNNNNNNNNN ............................. GTGAAAGGCCGAAACAAACGTCAACGAATTGACCCTG 156045 29 100.0 36 NNNNNNNNNN ............................. CACTTTTGCTAAAACACCGTCAATGGTCAGGTAGCC 156110 29 100.0 36 NNNNNNNNNN ............................. GGTTTTCCCCAGAACAACAAACCGACATTCTTTTCT 156175 29 100.0 36 NNNNNNNNNN ............................. AATATGGGAAGAGGTAGGTACAGAGAAAATAATTAA 156240 29 100.0 37 NNNNNNNNNN ............................. AAAGGTTGGGTATTTACTTGGCTTGCCTTTAACGATA 156306 29 100.0 36 NNNNNNNNNN ............................. TGTGCTTATTCGTCGTCAACCTGATGTGCCTTCTAA 156371 29 100.0 36 NNNNNNNNNN ............................. TTTCTTTTTAGAAATATTAAAAATATGGATTGACTT 156436 29 100.0 37 NNNNNNNNNN ............................. TCAACCCATGGCTGAACCAATCGCTTACCAATAGCAG 156502 29 100.0 37 NNNNNNNNNN ............................. TAGACGCCCAAACATAATAAAGTGCTTCAGGTATTTC 156568 29 100.0 36 NNNNNNNNNN ............................. TATTCTGCCGAGTTCATGTTGTATCACCATCTGCTG 156633 29 100.0 37 NNNNNNNNNN ............................. TTCTTGTTCAGTTGCTACTATTCTTACTACATTACCT 156699 29 100.0 36 NNNNNNNNNN ............................. AAAAAGTTTGCAAGTTTAATTTTAATGTCATCAGGT 156764 29 100.0 36 NNNNNNNNNN ............................. AATATGGAATGGTCAGAGGGTATCAAGAGTATATTA 156829 29 100.0 36 NNNNNNNNNN ............................. TTTTTATACTAAAATTTTGCACAGAAATAGGGCAAA 156894 29 100.0 37 NNNNNNNNNN ............................. GAAATACAGCGCAATAATAACTATATCCTCTGCTTTT 156960 29 100.0 37 NNNNNNNNNN ............................. GATTTCTGATGGAAATCAGGATATTAGCCTCTGGCAG 157026 29 100.0 37 NNNNNNNNNN ............................. TTGAACTTGTATTTTAGATAATAAGTGTCTGTTGCAT 157092 29 100.0 36 NNNNNNNNNN ............................. AAAGATATAAAAAAATTTAAAGACAAAGCATACTTC 157157 29 100.0 37 NNNNNNNNNN ............................. TGTTCAACCTACTTTCTTTTGTGAGTATATCTCTATT 157223 29 100.0 36 NNNNNNNNNN ............................. CAGAGCCTGCGGGGGAGGTCTGGAGGGGGAAAGCCT 157288 29 100.0 35 NNNNNNNNNN ............................. TCTTGAGTAGGTCCCATTATCTTTTCCCCAAAATC 157352 29 100.0 36 NNNNNNNNNN ............................. ACCAAAAGTAATTCCTCATATTAATGTGTTTCACTT 157417 29 100.0 37 NNNNNNNNNN ............................. CGAAATCATGAACAGGATAAAAATAATTAATATAGCT 157483 29 100.0 36 NNNNNNNNNN ............................. TTTTTCAATTAATTTATCTTGGTCACCTAATTTATC 157548 29 100.0 37 NNNNNNNNNN ............................. GTCATTTACATTGAACTTTTTCAACCAGTCATTGGTG 157614 29 100.0 36 NNNNNNNNNN ............................. AGGAAAGTAGTTTTGTATGTGCTTCCTGCAGATGCA 157679 29 100.0 36 NNNNNNNNNN ............................. GATCTTATACGATTATAATTGAAAAAAAGTATAATA 157744 29 100.0 37 NNNNNNNNNN ............................. GTACTCTAAATATTCAGCTAATGACATTTCTGTATCA 157810 29 100.0 36 NNNNNNNNNN ............................. AAATGCAGCAAAGCAAGCTGACCTTGACGCCCACAT 157875 29 100.0 37 NNNNNNNNNN ............................. TCTTCATGGAATCATATAAAAAAACAATATGTTGCAA 157941 29 100.0 36 NNNNNNNNNN ............................. GAAATCAAGAAAAAGCCAGCTTCTTTAATACAGCAG 158006 29 100.0 36 NNNNNNNNNN ............................. GCCGACCCAGATGGATATGGGCATCTGAATATGGCA 158071 29 100.0 36 NNNNNNNNNN ............................. TCTTTGTCTTTGTCTTGAATCAAAAGTTTTTTGATA 158136 29 100.0 37 NNNNNNNNNN ............................. GCAAAAACGCGAGCGGGTAATGTATTTGATACAGATT 158202 29 100.0 37 NNNNNNNNNN ............................. TACAGACCCAGTTAGTTACTTTAAAAAATTTGGCAAG 158268 29 100.0 36 NNNNNNNNNN ............................. AAGATTAGTTTCTATGTTCTGTTTGTTCAGCTTTCA 158333 29 100.0 37 NNNNNNNNNN .....................T....... CACACTGAAAAAGAAATCAATACATAAAGATATAAAT 158399 29 100.0 36 NNNNNNNNNN ............................. GTTGATGGTGTAACGTCAGTGACAAATTTGCAAGCG 158464 29 100.0 36 NNNNNNNNNN ............................. AAAGTGAAGGCGGTTCAAAAAGTATAACACAATTCA 158529 29 100.0 37 NNNNNNNNNN ............................. ATTGAACGCAGAGGTGAAGGTGATGACTGGTATTATG 158595 29 100.0 37 NNNNNNNNNN ............................. AAGATTCAACTTCTACTAACACAAAATGCTCATAAAA 158661 29 100.0 36 NNNNNNNNNN ............................. ACTACCGCCCGCTGACACTGGAGACTGGGGTGATAA 158726 29 100.0 37 NNNNNNNNNN ............................. TCTAAACCACCCGAACTAATTTGCTCTGAATAGCTAA 158792 29 100.0 36 NNNNNNNNNN ............................. ATATACTGCTAAATAATAAAACCTTACGTACAACAG 158857 29 100.0 36 NNNNNNNNNN ............................. GTTGACGACAAAGGAAATATCAAAGTTGGTACAACT 158922 29 100.0 38 NNNNNNNNNN ............................. GATATTTTTGTTTGTTCTAGTTCATAACTATACCCATC 158989 29 100.0 36 NNNNNNNNNN ............................. TTTGAAAAGGAAGAAGGTGATAAAGGAGAAAAAACA 159054 29 100.0 37 NNNNNNNNNN ............................. AAAAGTTGTTGTTACACAAGAATTAGGCAGACAATAC 159120 29 100.0 36 NNNNNNNNNN ............................. TCGAGTTTGTTGTTGACGACGACGGCACAGGGGAAA 159185 29 100.0 39 NNNNNNNNNN ............................. CTGGTAAGTATTAAAAGGGTAAGTCGTCATCGTTGCTTG 159253 29 100.0 36 NNNNNNNNNN ............................. CAGGATGGTATGGTCGATTTGGAAAAGATTAAAGAC 159318 29 100.0 37 NNNNNNNNNN ............................. TTGTTTTGTTGCTTGTAAAGGCGTTGTAGAAATTCTG 159384 29 100.0 36 NNNNNNNNNN ............................. GCGGTTTTTTTACTATAAACTCTTGAAAAATTTTTA 159449 29 100.0 38 NNNNNNNNNN ............................. TTTTTAGTTGTTCGTTGGTGGTTTTATTTACACACACA 159516 29 100.0 36 NNNNNNNNNN ............................. ACGTTGCCTGATGGGTCATACAAACTAATTGTGACT 159581 29 100.0 38 NNNNNNNNNN ............................. TTCTCTTTGCTACCCCATTGATAGTGCGGGCATTTCTC 159648 29 100.0 37 NNNNNNNNNN ............................. TTCTTTCATTACTTCATCAAGAGAAGAATGCATTGAA 159714 29 100.0 36 NNNNNNNNNN ............................. TATTCTTTCAAGCTCCGCCTGTACGTCCGTTACCCA 159779 29 100.0 37 NNNNNNNNNN ............................. TCAAGTTTTAAAAGCTGAGATTTAACAGAATCATTCA 159845 29 100.0 37 NNNNNNNNNN ............................. ACAATGGTATATACAATATAAATCCGAATGCTTGCAT 159911 29 100.0 37 NNNNNNNNNN ............................. AGGAGTAGGGATGTTATGTTTGGATAAGGGGTGTAGA 159977 29 100.0 37 NNNNNNNNNN ............................. CATAGTACCGTCTGATGCACCAGATTTGCCACATGTT 160043 29 100.0 38 NNNNNNNNNN ............................. AGGAATAATCTGTATTATTTCATTCCAGTCAACAAACG 160110 29 100.0 37 NNNNNNNNNN ............................. TTACATTGTCAAAAGTGGGTAAGCCACCCTTGGTAAG 160176 29 100.0 35 NNNNNNNNNN ............................. GTTAGATTTTTAATTGTTACCCAATCTCCTGCTGA 160240 29 100.0 37 NNNNNNNNNN ............................. GCCTTTCATTACAAGAAGGGAATTTGGTCTATGAATA 160306 29 100.0 37 NNNNNNNNNN ............................. CGTAAAGGTTGCGGTCTTTGATTGCGTGAAGCTCATC 160372 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 134 29 36 GTTTTATCTGAACTATGAGGGATGTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.52%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [80.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [239,1809] Score: 0.18/0.18 # # Final direction: F [0.68,0.18 Confidence: MEDIUM] >NC_012125 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =========================== ====== 3028744 27 100.0 34 TTGGCGCACG ........................... CCGATTAAGATCCGCAGTCTGCATCAGTAACTCG 3028805 27 96.3 34 CAGTAACTCG .................A......... TTCCCCTCCGGATGGCGGGGATGCTCTTATGGCA 3028866 27 100.0 34 TCTTATGGCA ........................... TATGCCGCCCCGGCGTACAGCGACAGGCGGGCCG 3028927 27 96.3 34 AGGCGGGCCG ...............T........... GGCCGTCTGCATTGAGCGCAGTTTTAACGCGTCG 3028988 27 100.0 34 TAACGCGTCG ........................... TGCGCCACGCCTATACCATCCGAGTTTTGAGCCG 3029049 27 100.0 34 TTTTGAGCCG ........................... TCTTCCGGTGGGTTTTCTTGTCCGTCGATGGCCG 3029110 27 100.0 34 TCGATGGCCG ........................... ATCTAACCGGCTGCAATGCTCAGGCATTACAGCG 3029171 27 100.0 34 CATTACAGCG ........................... GGTGTGCCAATGGACAATACAAAGCATTTTCGCG 3029232 27 100.0 CATTTTCGCG ........................... ACTAAATGTA ========== ====== ====== ====== ========== =========================== 9 27 34 GTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [114,121] Score: 0/0.18 # # Final direction: R [0,1.92 Confidence: HIGH] >NC_012034 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 164442 29 100.0 37 GTTGGTATAG ............................. TTTAAAATCATTATGATATGCTAAGGCATAGTAGATG 164508 29 100.0 38 ATAGTAGATG ............................. GACATCTTTGTTAAAACTGTGGTAGACAGCGTTCGCAA 164575 29 100.0 37 GCGTTCGCAA ............................. TGAGGATTATGCGAGAAAAGTTGCTAAAGCAAGTTTG 164641 29 100.0 37 AGCAAGTTTG ............................. AAAAACATACTATACAATCAATAAGAATTTTTATCAT 164707 29 100.0 36 TTTTTATCAT ............................. CTTAAAGGGCTTGAAAACTTAACTGTTGCTCAGCAG 164772 29 100.0 37 TGCTCAGCAG ............................. AACATATCTTGCATACGCTTTTTTAGATTCACATCTT 164838 29 100.0 36 TTCACATCTT ............................. TTGAAGCTGTACAAAGAGAAATGAAAAGAAGAGCTC 164903 29 100.0 36 AGAAGAGCTC ............................. CTTCACAAGACATGTATCAAAATATTTACAACCTTG 164968 29 100.0 36 TACAACCTTG ............................. AATTCAAAAATGGATTATAGCAAAAATCAGCTTCAA 165033 29 100.0 36 TCAGCTTCAA ............................. GGCAAGAAGAATAAGGCAGGCAATACCTGTTTTGAG 165098 29 100.0 36 CTGTTTTGAG ............................. CGGGATTAAGATAGGCGTTCAAGCAAACACAACAGG 165163 29 100.0 37 ACACAACAGG ............................. ATGAAAGAGCTGAAAGCAGATTTAATGAGCAAGAAAG 165229 29 100.0 36 AGCAAGAAAG ............................. GGCTCTGGTTTAAATTGAGAAATAAATCCATTGCCT 165294 29 100.0 36 TCCATTGCCT ............................. GGTGAAATATTTAATAATGTGTTAGGATAAGGAACA 165359 29 96.6 35 ATAAGGAACA .........A................... AGTTTTTATCAAGAATTTTTTCTTTTGTTATGCTG 165423 29 100.0 TGTTATGCTG ............................. TTGAATCTAACGCAGCAACGCCTCCGCTTTTTTGTATA ========== ====== ====== ====== ========== ============================= 16 29 36 GTTTTATCTGAACTATGAGGGATGTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.52%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [248,1759] Score: 0.18/0.18 # # Final direction: F [0.68,0.18 Confidence: MEDIUM] >NC_012034 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2803920 30 100.0 37 CTATCCACGG .............................. TCAATCTCCAAAACCTTTATATACTTAAAATCATAAA 2803987 30 100.0 37 AAATCATAAA .............................. TCTTTACCATATGATAAGACTTTCCGCTTCCAGGTTT 2804054 30 100.0 36 TTCCAGGTTT .............................. TTTATGATTTGTGTTTTTATTTCGAACTATGAGGAA 2804120 30 100.0 37 CTATGAGGAA .............................. ATAAAAGCAATTAGTTTGTAACTAAGGTCATCTTTGA 2804187 30 100.0 35 TCATCTTTGA .............................. CAGCTTCAATCTCAAGTTTGTCTTGTTCATAATTG 2804252 30 100.0 36 TTCATAATTG .............................. CTGCTTGGTTGCTTCAAGCTCTAAAACTTTGAGCTC 2804318 30 100.0 37 CTTTGAGCTC .............................. TATGCATTATTTATGACAGAAATTTAGATAACGAAGG 2804385 30 100.0 36 ATAACGAAGG .............................. CAATATCTCGTATCTTCTCACTTGCCTTGTCTGTTG 2804451 30 100.0 38 TTGTCTGTTG .............................. TATCTTGCCTTAGTAACAATTGCCTTCTTTTGGTTCGT 2804519 30 100.0 37 TTTGGTTCGT .............................. ACTTTATTATCGTTCACAAGGTAGATAGATTTGCTCG 2804586 30 100.0 36 GATTTGCTCG .............................. GTGTACACATCTTTACCTTTTTTCAGATTATATACT 2804652 30 100.0 37 ATTATATACT .............................. ACTTCTCGATTATTTTTGAAAATAACTTTTCCTGTAT 2804719 30 100.0 36 TTTCCTGTAT .............................. ATGAACCTAGCATTCTTACAACTAAAAAACATAAAT 2804785 30 100.0 36 AAACATAAAT .............................. ATTTTTCGACTTTGTTTGCATCGGTAAAGGATACAA 2804851 30 100.0 36 AAGGATACAA .............................. TTCTTTTTAGGTTTTGTTGATTGTTTTGAAATTTTA 2804917 30 100.0 38 TGAAATTTTA .............................. AAATTAATAGATGTAGAAGGTGAACCTTTCAAATATGA 2804985 30 100.0 38 TCAAATATGA .............................. TTGTGTCTCATTCATTCTATCACTTCCTTATCCAACCA 2805053 30 100.0 37 TATCCAACCA .............................. ACTCTTTCTCTTCTCTTTCTCTCTCTTGCATCATCAC 2805120 30 100.0 37 GCATCATCAC .............................. CACGATAAGAAAAATGACGTAAGCAAATATTGTGCTG 2805187 30 100.0 36 TATTGTGCTG .............................. TAATTTCCTCCTTTCTAAATTTTAATCCCTAAATGG 2805253 30 100.0 36 CCCTAAATGG .............................. ACAACTTTGAAGAAGCTCCACAGACCACGCAGAACG 2805319 30 100.0 35 ACGCAGAACG .............................. CTTAATGAGTTCGTTTTGCTTACGGATGGTTTCCA 2805384 30 100.0 36 ATGGTTTCCA .............................. AGTGTTTGGCTATCAGCTGTGTTAGTTTGGTATGGT 2805450 30 100.0 36 TTGGTATGGT .............................. AAATTTATTGCTGATGCATTTAGTTCTTTAGGAAGT 2805516 30 100.0 36 TTTAGGAAGT .............................. AAATTTTGAGTGAAATCTTTAGTGAAAGTGATTTGA 2805582 30 100.0 36 AGTGATTTGA .............................. TCATCTGCAACATGTTGTGCGCAGTTTCAATGAAAT 2805648 30 100.0 39 TCAATGAAAT .............................. TATATATAACTTTGATATTTGTTATTTTTAGACTTTTTG 2805717 30 100.0 35 AGACTTTTTG .............................. TCTTTTCCAAATCCACCGTCCCATCCTGTGGCACA 2805782 30 100.0 36 CTGTGGCACA .............................. ATTGTATCATAGCTACATTTGTGTAAACACCTAAAG 2805848 30 100.0 36 ACACCTAAAG .............................. ATTGTATCATAGCTACATTTGTGTAAACACCTAAAG 2805914 30 100.0 35 ACACCTAAAG .............................. CCCACTATCTTATCGTAGTAAGTCACAATAGCCGT 2805979 30 100.0 36 CAATAGCCGT .............................. ATGTAACCACTGATTCTAAACGTACTACTTAAAACT 2806045 30 100.0 38 ACTTAAAACT .............................. TTTCATAAAACCTCCTATGATTCTTAATAATAGTCTTA 2806113 30 100.0 36 AATAGTCTTA .............................. TTTTTTCATTTTTCCATATCTCTGTCCAATATTCCC 2806179 30 100.0 37 CAATATTCCC .............................. AGATATAAAGATTTACTTTTGCTGTTATAAAATCATT 2806246 30 100.0 35 TAAAATCATT .............................. ATATCTCTTATCATAGACTTACAATCATCATAATT 2806311 30 100.0 36 CATCATAATT .............................. CAAACTCTATTACTCTTTGTTCCAATTCTTCAGCCC 2806377 30 100.0 36 TCTTCAGCCC .............................. ATAGCTCAGGTTTGTATAATACATCACCTGATTCAG 2806443 30 100.0 38 CCTGATTCAG .............................. AGATATACAAGCTTATTCTTGCCGTTATAAAATTATTC 2806511 30 96.7 35 AAAATTATTC .............................T ATGAGAGTAACGCTATTAGAATGGTAATAAAGTGG 2806576 30 96.7 36 AATAAAGTGG ...........C.................. GGTACAACAGCAAAAAATCCTCTTTATATGGCAAAT 2806642 30 96.7 37 TATGGCAAAT ...........C.................. AGGCTATCACAAGCCTTATCACCAGCGCCAATATAAA 2806709 30 96.7 38 CCAATATAAA ...........C.................. TTTGAATTTGACACAAGCAGTAACAGGAAGTGTAAATT 2806777 30 96.7 36 AGTGTAAATT ...........C.................. AAATTATTAAAGTTCTTCAAACAAAAGAAGAAATTG 2806843 30 96.7 36 GAAGAAATTG ...........C.................. ATGCCTTTAAATTGTAACCTCTCAATCCTTCTACAA 2806909 30 96.7 37 CCTTCTACAA ...........C.................. GTAAAAATGGAGATACAATAAATGGAATACTTAATAT 2806976 30 96.7 35 TACTTAATAT ...........C.................. AATTATAGTGGTAGTATACCTAATACTTTTCGTGT 2807041 30 96.7 35 CTTTTCGTGT ...........C.................. ATAGAATATGTCTGCTTGGTGTATCGCAGGATTTA 2807106 30 100.0 38 GCAGGATTTA .............................. TTTGTTCCAGCATTGTAAACTCCACTAGCTGGTGAATA 2807174 30 100.0 36 CTGGTGAATA .............................. AAGAAAAGCGAGGCTGTGAGGTTTTTAATGCAGAAT 2807240 30 100.0 36 AATGCAGAAT .............................. TTACATTTTCTCTACCAAACTTCTCTGTTATTCTTT 2807306 30 96.7 GTTATTCTTT A............................. CTGGTAACCTGACTGTTGAATACTTGTCAAAAAGATT ========== ====== ====== ====== ========== ============================== 52 30 36 GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.30,-4.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [433,780] Score: 0/0.18 # # Final direction: F [5.28,0 Confidence: HIGH] >NC_012034 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2828426 29 100.0 38 CTATCCACGG ............................. TAGGCTTTCTAAAATTTCTTCAACGTCTTTTTTGCTTG 2828493 29 100.0 36 TTTTTGCTTG ............................. TAAAAAGCTGAGGAAAGTGATTTTCTATCAGGACGA 2828558 29 100.0 37 ATCAGGACGA ............................. TTTGCTAAAAATGTCGCAAAAACCGTTATACCAGCTG 2828624 29 100.0 36 ATACCAGCTG ............................. TTGCCTTATTGATGAATTATCTATGATAGATTTAAA 2828689 29 100.0 37 TAGATTTAAA ............................. TAGGGAATTGTAAAGAAGGAAAATACCAGCTGTGATG 2828755 29 100.0 36 AGCTGTGATG ............................. TCAATATTTTCATAGCTTTCATACACATAATTTTCA 2828820 29 100.0 37 ATAATTTTCA ............................. TATAATTTTCATTTGTACATAAATGGTGTTGAAGCAA 2828886 29 100.0 36 GTTGAAGCAA ............................. TAATCCTTTTAACCTCATGGGTCGTGTAGGGAGTAG 2828951 29 100.0 36 TAGGGAGTAG ............................. TTCTTAAGACCACTTTTTGTTTTAACAAGTTTAACA 2829016 29 100.0 36 AAGTTTAACA ............................. TTTAACCTCTTGTCTCCATCAGGAACTGGAGCAAGA 2829081 29 100.0 37 TGGAGCAAGA ............................. TCGGGGATGTTTTTACCTGCCCAATTTTCGATGACTA 2829147 29 100.0 37 TCGATGACTA ............................. TATTTCACAGATGATGCAGTTAGGCGTTCTTACAATA 2829213 29 100.0 38 TCTTACAATA ............................. TGCTGGCTGGGTTCTGTTAGTTTTTTTCAGTGTCGCCC 2829280 29 100.0 34 AGTGTCGCCC ............................. TGCAAAAAATCAAGTACTTTTTTTATTTTTTAAA 2829343 29 100.0 37 ATTTTTTAAA ............................. TGCATTAATTCTTTTTCTGTTTCAGCTAACATAGCCG 2829409 29 100.0 38 AACATAGCCG ............................. TATTTTTTGAATGAGATAATGCAGAAGACGAAAGGAGA 2829476 29 100.0 37 CGAAAGGAGA ............................. TAAGAAATAGAGAGAAAAAGAAAAGAAGAACAACAAA 2829542 29 100.0 38 GAACAACAAA ............................. TTTTGCTTTGCTTATCCCTTTAGCTTTGCTGCTTACTA 2829609 29 100.0 37 CTGCTTACTA ............................. TCTATTTCAGTAGTTGCTAATGGTTTGTCAACGTCTT 2829675 29 100.0 37 TCAACGTCTT ............................. TTTTTACAATTACTATTATACTCGAAATTTTTATTTT 2829741 29 100.0 37 TTTTTATTTT ............................. TTAACCGGCTCTCCTGTTACCCTTATAACACTTGTTC 2829807 29 100.0 37 ACACTTGTTC ............................. TGTGCGGTATCTGGAAAAGATTTTGTAATTCAAGATT 2829873 29 100.0 37 ATTCAAGATT ............................. TAACGTTTTAAAAAGGATGGCTGAAGGTGAACGTGTT 2829939 29 100.0 39 TGAACGTGTT ............................. TTGGAGAAATCAGGTAAACTGTCCATAACGTCCTCAATG 2830007 29 100.0 37 GTCCTCAATG ............................. TGCATTAATTCTTTTTCTGTTTCAGCTAACATAGCCG 2830073 29 100.0 38 AACATAGCCG ............................. TATTTTTTGAATGAGATAATGCAGAAGACGAAAGGAGA 2830140 29 100.0 37 CGAAAGGAGA ............................. CTAATATAGCAGAGCTATACTTTGTAGTGTTTCTTCA 2830206 29 100.0 36 TGTTTCTTCA ............................. CTTTTCATCTATGATGTCCATCAACTTTTCAACAGT 2830271 29 100.0 37 TTTCAACAGT ............................. CACAATGTACATTAATCTGTCAGGGAATATTGCTTTT 2830337 29 100.0 37 TATTGCTTTT ............................. TAAGAAATAGAGAGAAAAAGAAAAGAAGAACAACAAA 2830403 29 100.0 37 GAACAACAAA ............................. TATATTTGACCTTCTTACCACCTCAATCACCCTCTTA 2830469 29 100.0 37 CACCCTCTTA ............................. TTAACCGGCTCTCCTGTTACCCTTATAACACTTGTTC 2830535 29 100.0 37 ACACTTGTTC ............................. TGTGCGGTATCTGGAAAAGATTTTGTAATTCAAGATT 2830601 29 100.0 37 ATTCAAGATT ............................. TTGTGAAATATTCTGTTTTGTTTCTTCTTCAAATATA 2830667 29 100.0 37 TTCAAATATA ............................. CCATCGAGTAATGCGGACTGCAACTTCTCATAATCAT 2830733 29 100.0 39 TCATAATCAT ............................. CCACACCTCACCTTCTTTTAACTGCTTTTCAATTTCCTG 2830801 29 100.0 39 CAATTTCCTG ............................. CACATAAGTAAAAACGGTAAAACTAAGTAGAACAAAAAG 2830869 29 100.0 38 GAACAAAAAG ............................. TAAGAGCTTGAAGATTATATAAAACAAAAAAACACAAT 2830936 29 100.0 AAAACACAAT ............................. CTGACAATTAAAGCATATCAAAATGCCTCAGTAGCATA ========== ====== ====== ====== ========== ============================= 39 29 37 GTTTGTAGCCTCCCCTTTGGGGATTGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:51.72%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-7.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1878,79] Score: 0.18/0.18 # # Final direction: F [4.68,0.37 Confidence: HIGH] >NC_012034 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2856808 30 100.0 36 CTATCCACGG .............................. CGATGAAGGATTGTAGGATTTTTGCAATATATAAAC 2856874 30 100.0 35 ATATATAAAC .............................. TATAATAGTTGCTCGCATAGGAAACTCTATACATT 2856939 30 100.0 36 TCTATACATT .............................. AAAGTTTATCTATTTCTTCTTGCGTTTTATTTGTTT 2857005 30 100.0 37 TTATTTGTTT .............................. AAATATTTAGCGCTTTGTCTTTAAATTGAGAATATAA 2857072 30 100.0 37 GAGAATATAA .............................. GTCCCTCACAACGATGAAACAATCAAAAGAATCTATT 2857139 30 100.0 36 AGAATCTATT .............................. TAAACAAATTAATGTAGCTAAATTTGTCGCCTTGTA 2857205 30 100.0 36 TCGCCTTGTA .............................. TCCAGTGGGATGGAAAGAGATGAAATAATGTCAAAA 2857271 30 100.0 37 AATGTCAAAA .............................. AAAATAATCAAAGATTCTTTTACCCCACCTACACATC 2857338 30 96.7 36 CCTACACATC .............................T CAATATCGAGAATAATCTTTCTTCCTTCAGTAGTTT 2857404 30 100.0 36 TCAGTAGTTT .............................. GATAATGAGGGATTGAAAGTTGGTGAGCTTGTGAAA 2857470 30 100.0 36 GCTTGTGAAA .............................. TTCCTTGTATTCGCTACAGGCAAAGTGATTTTACCA 2857536 30 100.0 36 GATTTTACCA .............................. TCATAATTTAATCTTCTGCGTGTTTGTCTGCGCAAA 2857602 30 100.0 TCTGCGCAAA .............................. GTTATTATGA ========== ====== ====== ====== ========== ============================== 13 30 36 GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [5,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-7.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [661,90] Score: 0.18/0.18 # # Final direction: F [5.09,1.01 Confidence: HIGH] >NC_012214 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 961931 28 100.0 32 TTTACTAACG ............................ TCGGCGCTGCCGCTGCTCAAACTCGCCGTGCT 961991 28 100.0 32 TCGCCGTGCT ............................ ACCATCACTGACAGCGAAGCCCGGAATAAACC 962051 28 96.4 32 GGAATAAACC C........................... AGTCCCGGCACCACCTCAGCGCCCAGCCCTGT 962111 28 100.0 32 CCAGCCCTGT ............................ AGCTAGAGGGGGTAAATAGCGTGGACTACAGC 962171 28 100.0 GGACTACAGC ............................ AAGTCGCGAACAGATTTCGGGGGGTTTTTGCA ========== ====== ====== ====== ========== ============================ 5 28 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [131,785] Score: 0.18/0.18 # # Final direction: F [1.51,0.18 Confidence: HIGH] >NC_012034 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2866258 30 100.0 36 TTATCTACGT .............................. ACATAAAAAACGTGCGATTTCCTTTTTGCCTGTTTC 2866324 30 100.0 35 TGCCTGTTTC .............................. TATTTCTTAATATACATTTTACTGCAAAATAACTT 2866389 30 100.0 36 AAAATAACTT .............................. CTAATTTAAACCTCCCCACTTTATGGCGTATGTCGT 2866455 30 100.0 36 CGTATGTCGT .............................. GTACTAAACCAAGAGAAACCTTTATTTTATAATCAA 2866521 30 100.0 36 TTATAATCAA .............................. TCTTAATGAGCAAATCATAGCTAACCTTATGATTTA 2866587 30 100.0 35 TTATGATTTA .............................. ATTCTTCTTTCTTTTGTTTTTCATAGTTTTCCTGA 2866652 30 100.0 35 GTTTTCCTGA .............................. ATTCTTCTTTCTTTTGTTTTTCATAGTTTTCCTGA 2866717 30 100.0 35 GTTTTCCTGA .............................. ATTCTTCTTTCTTTTGTTTTTCATAGTTTTCCTGA 2866782 30 100.0 35 GTTTTCCTGA .............................. ACAAAATTTACAGCTATGCTCAAGAAATGATGAGC 2866847 30 100.0 35 AATGATGAGC .............................. CCATTAACATGGAGATATGCTTCCTTCTGTGCAAG 2866912 30 100.0 33 TCTGTGCAAG .............................. TAGATAAACAGTTTTATTCACAAATGGGGTATG 2866975 30 100.0 34 ATGGGGTATG .............................. TGGTTTGACACGTGTAAGGTTTTCATGGGTGCCG 2867039 30 100.0 36 ATGGGTGCCG .............................. AAGTATTTTTTTCTTATTACAAACGGAATAAGCGTT 2867105 30 100.0 36 AATAAGCGTT .............................. AATCAGCTCCTTCTTGAGCATCATACATCACCAAAA 2867171 30 100.0 37 ATCACCAAAA .............................. CTCTTCCTGAAAGCCCAGTTAGCTTGCTCAAGATTTG 2867238 30 100.0 36 TCAAGATTTG .............................. CTCTAAATTGTCCACGCAAAACATCTATTTCCTCGC 2867304 30 100.0 33 ATTTCCTCGC .............................. AAATTTATATAAAAATATTTTCTGCACATTTTT 2867367 30 100.0 37 GCACATTTTT .............................. TCGACCACTACCCAGCGAGAGTTTTTTGGAACAGCCA 2867434 30 100.0 37 GGAACAGCCA .............................. TAAAGCTCTACATAGGCAGTGATAACAAGCAATATTT 2867501 30 100.0 36 AGCAATATTT .............................. ACAGTATCGGGGCTGCGGCGCAAGGCTGCAGCGTTC 2867567 30 100.0 36 TGCAGCGTTC .............................. TTTTGTATGTCATGCTGTCTTCCCTTCTTCCTTAGA 2867633 30 100.0 35 CTTCCTTAGA .............................. CCGCATGATTGGCAGTGGATAGCAGAGCTTGACGA 2867698 30 100.0 37 AGCTTGACGA .............................. ACAGCTTTTGCCAAATCACGATAAGTAAGTTGTCTTG 2867765 30 100.0 36 AGTTGTCTTG .............................. AAACTCTCAGCCTCTTTACACAAGTTATATAGCCTT 2867831 30 100.0 36 ATATAGCCTT .............................. TCATATAAATACCCCCCTATCTTATTTCTTATCTTG 2867897 30 100.0 36 TCTTATCTTG .............................. AAGTATTTTTTTCTTATTACAAACGGAATAAGCGTT 2867963 30 100.0 36 AATAAGCGTT .............................. AAGAGAGTTTAAGACTTGCAAATTCGAGGAGTGGTA 2868029 30 100.0 36 AGGAGTGGTA .............................. AAGAGAGTTTAAGACTTGCAAATTCGAGGAGTGGTA 2868095 30 100.0 37 AGGAGTGGTA .............................. TGGAGGGAAGAGTGATGGTTTATCAAATCAAAATTGA 2868162 30 100.0 36 TCAAAATTGA .............................. ATTAACGCATCGTCGCTATTCAGTTTGTCCTCTCTT 2868228 30 100.0 37 GTCCTCTCTT .............................. TCAGCTTCTTTTTCAACTTTTATGTTGCTTTTACTTA 2868295 30 100.0 36 CTTTTACTTA .............................. AGACTTTTTAAAACTGTTAATTATTTTTTACCTATT 2868361 30 100.0 36 TTTACCTATT .............................. ATGTGATAGCAAGGAATATACGATTTAAAAGAGGTG 2868427 30 100.0 35 AAAAGAGGTG .............................. TTGTGTTCTGGGTCATATAATCCATATTTTGCAGC 2868492 30 100.0 34 ATTTTGCAGC .............................. TTGCTTTCGTTTTCTCGCTCACAGTATTCAATTG 2868556 30 96.7 TATTCAATTG G............................. CCTCGATGTT ========== ====== ====== ====== ========== ============================== 36 30 35 ATTTGTAGCCTCCCCTTTGGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-7.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1564,263] Score: 0.18/0.18 # # Final direction: F [5.09,0.37 Confidence: HIGH] >NC_012108 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 629857 37 100.0 34 ACAGGATGAA ..................................... TCCTCACAGGGAATAGATGTCGGGTTTTCTGATG 629928 37 100.0 36 TTTTCTGATG ..................................... CAAGGAGTTCAAAGCCGAGTTGTTCCGCAACGTCAA 630001 37 100.0 37 GCAACGTCAA ..................................... GTGAGGCTGATCGACTGAAACTGAGGACGAAAAAACA 630075 37 100.0 37 CGAAAAAACA ..................................... TAAGGTGAAAGCGTCCGCAAAACGTCCGCAAAATGAA 630149 37 100.0 35 GCAAAATGAA ..................................... ATTTTGCTCCTATCCCTGCAACAGCCATTTTTATT 630221 37 100.0 36 CATTTTTATT ..................................... TAAAGACCGCCATAATAAGAACAATCAGATATACTT 630294 37 100.0 36 AGATATACTT ..................................... ACGTTGTAATTGAAAGCATAGCGGACCCCATCAAAT 630367 37 100.0 37 CCCATCAAAT ..................................... GTGTGGACGAGGCTCACCGGTGGTTCGGAGAAAAGAA 630441 37 100.0 35 GAGAAAAGAA ..................................... ACGTTGTAATTGAAAGCATAGCGGACCCCATCAAA 630513 37 100.0 36 CCCCATCAAA ..................................... AGTAAACCATCACCGTCATCATCGTGAAAAGTACCC 630586 37 100.0 35 AAAAGTACCC ..................................... AACTTTGGGTGTCGTCAATCGGGTTTGACCAGGCG 630658 37 100.0 34 TGACCAGGCG ..................................... CCGAGTGGGCAGTGGTCTCTGTTCATCGGTGTGG 630729 37 100.0 35 ATCGGTGTGG ..................................... TTGAATCAGCAGACTGAGCAAACGAGTGAAGGTTT 630801 37 100.0 35 GTGAAGGTTT ..................................... CCCAGACCGCATTGGATGCCGGAGCAGATATTTTA 630873 37 100.0 36 AGATATTTTA ..................................... TTTCCAGCGGGGCCAACTCCATGGAAATCTATGGAA 630946 37 100.0 35 ATCTATGGAA ..................................... TTGAATTGCTGAAACTCAATAAAACCGACATTTGT 631018 37 100.0 34 CGACATTTGT ..................................... TAGGGAATCAGGCGGTAATGCAGATGGCGCTTTT 631089 37 100.0 35 TGGCGCTTTT ..................................... AAAGACGGCAGCCTGATTGAAACCAGGGCGGCTGG 631161 37 100.0 36 GGGCGGCTGG ..................................... ACAAAAGAGAGCACACCACCCAATTGCACGGCCAAA 631234 37 100.0 36 CACGGCCAAA ..................................... GTCGTAGACTTAGCATTCTTCCGGGGGATCTCTCCA 631307 37 100.0 35 GATCTCTCCA ..................................... CATAAGGGTTGCGATTGCGTTGTCGTTGCGGGGTG 631379 37 100.0 35 TTGCGGGGTG ..................................... CATAACGTGCTCGGTATCCTTTAGCGAGATTGGGG 631451 37 100.0 35 GAGATTGGGG ..................................... AAATATTATATGTGGTGACGGCCTGCTGTGCGTCC 631523 37 100.0 35 CTGTGCGTCC ..................................... GAACTTCCAGATGCTCCAGAAGATGCAAAAGAAGT 631595 37 100.0 36 CAAAAGAAGT ..................................... TTTTTCATCATCCTATGTTGAGGATGGCGCGGGACG 631668 37 100.0 35 GCGCGGGACG ..................................... ACCGTGAAACCGGAGTCAACCTGCTTAAAGAGATG 631740 37 100.0 35 TAAAGAGATG ..................................... TTGGTTTAATTTTGTTCTACCAGACTCCAAAATTG 631812 37 100.0 36 TCCAAAATTG ..................................... GCCGTCCGCAAAACGAAAAAGGAGAAAATAAAACAA 631885 37 100.0 37 AATAAAACAA ..................................... CGATTGCCCAGTACGGGGACGACCTATCCGCAGCAAT 631959 37 100.0 36 CCGCAGCAAT ..................................... ATGATTGTCAATGAATCGCATGGATCTATAGAAGTA 632032 37 100.0 36 TATAGAAGTA ..................................... AGGCACAGTCTATATCTTCCTCCATCTTGCTTGCGG 632105 37 100.0 36 TTGCTTGCGG ..................................... TTGATCCCATTACCAAAACCCTTGTAAAACCCCTTG 632178 37 100.0 37 AAACCCCTTG ..................................... TCGATTACACCATTACCGGGTGGGAGGGGGTTACGGA 632252 37 100.0 36 GGGTTACGGA ..................................... CAGGACAAGCTGATATCTCAGGATTGTTGTCTGTTT 632325 37 100.0 35 TTGTCTGTTT ..................................... TAGGTCTTGGGAAGACTGCAAAGGGTGCCCGGTTT 632397 37 100.0 36 TGCCCGGTTT ..................................... CCTGGGATATCTTCCGGGTTGCGTGCGGCCCTGGCT 632470 37 100.0 34 GGCCCTGGCT ..................................... AATCGAACTTATCTGCGTCCATATGGACTCTAAA 632541 37 100.0 36 GGACTCTAAA ..................................... ATCCGTCATCACGCTTTAATACTGATACCTGTGTCC 632614 37 100.0 36 ACCTGTGTCC ..................................... TATCTATTGCCCATTATGTGGGTATGAAGACTTTGA 632687 37 100.0 34 AAGACTTTGA ..................................... TTCTCACGCATCCTATTACCTGCTGACCGAAAAT 632758 37 100.0 36 GACCGAAAAT ..................................... AGCACAACTTATGCCAATGGGGATGCAGTGGCTTGT 632831 37 100.0 36 AGTGGCTTGT ..................................... TCAAACGCGAGCTCGAAGAGGCGTTTGAAATGGATG 632904 37 100.0 34 GAAATGGATG ..................................... ATTTTGCCCTTTCAAGCTCGACCTCAGCCCGTTT 632975 37 100.0 35 CAGCCCGTTT ..................................... ATCCATTGTCGGTTAGATTGTGGCCTATTCCTATA 633047 37 100.0 36 TATTCCTATA ..................................... CAGCGATCAGAAAACCATTGCCGAGCTATCATATAT 633120 37 100.0 35 TATCATATAT ..................................... AGATGACTCCGGCTGAGGGGCAGGTTCTATTTTAT 633192 37 100.0 36 TCTATTTTAT ..................................... TTATTGTACAGAGGATGCAGCGAAAGCCCCATTGAT 633265 37 100.0 35 CCCCATTGAT ..................................... TTGTAACCATACCGGGGGCAGGGTCCGTCAATATG 633337 37 100.0 34 CGTCAATATG ..................................... TACTTATATCACTGCTGCCAATAATGGTGCTAGG 633408 37 100.0 38 TGGTGCTAGG ..................................... ATCATATAATTGACTGCATGTCTTGCGTCATTAAAGGG 633483 37 100.0 38 CATTAAAGGG ..................................... AAAGAATCAATCACAGTAGTAGAGACATCGGTCATCGT 633558 37 100.0 36 CGGTCATCGT ..................................... CGTTGGTGATTCAATCGGTAAAGCTGTTGACGGTAA 633631 37 100.0 35 TTGACGGTAA ..................................... TTGACGACAAAATAGACTTAGGAACCACATTCTTT 633703 37 100.0 35 CACATTCTTT ..................................... TTGACGACAAAATAGACTTAGGAACCACATTCTTT 633775 37 100.0 37 CACATTCTTT ..................................... TCGAAAAGTCTCTGACACTCTTCAATGCAATATATGA 633849 37 100.0 36 CAATATATGA ..................................... AAAAAAAACCCCACCCCGGCGAACCAGGGCAGGGCA 633922 37 100.0 35 GGGCAGGGCA ..................................... AAACCATAATCAATTTGATTGACAAAAAAAATGGG 633994 37 100.0 36 AAAAAATGGG ..................................... CAAAAACGAGATTGCGAAGATATGAAAGCGCTCCTC 634067 37 100.0 35 AGCGCTCCTC ..................................... CAACAACACCGAATCAGAAAAACGGCGATACTATG 634139 37 100.0 37 CGATACTATG ..................................... TAAACACATCCACCAGATCAAACACAACCGTCCAGAT 634213 37 100.0 37 CCGTCCAGAT ..................................... AAGGGTATAAGTGCCGGGCTCGTAATTCTCCACTCCC 634287 37 100.0 38 CTCCACTCCC ..................................... TCAGAAATGAAACAGGGTTTGAGCAGACGGTTTCAGCC 634362 37 100.0 35 GGTTTCAGCC ..................................... TATGCATCCCCTTCTTTGCCTGTTATTTTGAGCCA 634434 37 100.0 39 TTTTGAGCCA ..................................... AAGTGATTATTGTCGGTGCCGGGTTGGTTTCCGACGCTT 634510 37 100.0 36 TCCGACGCTT ..................................... CGGCCTCAACAACGGCTGCGATTCTGTCGGCTCTGA 634583 37 100.0 36 TCGGCTCTGA ..................................... TTTTAAACTTGGTGCGAATCCCGTCGAGGTCTACGA 634656 37 100.0 38 AGGTCTACGA ..................................... CCCTGGGGTGGGGACTGTTCTCTGCAAGCTCAATCACC 634731 37 100.0 35 CTCAATCACC ..................................... TCTGTATTTTTTTCATATTCAAATAGTAACCTCCT 634803 37 100.0 36 GTAACCTCCT ..................................... AATTTCTTTCACGGAATGACGCAAACGGATGGAATT 634876 37 100.0 35 GGATGGAATT ..................................... TTTTGAGCCACATTCCCCCAAAAGATGCTTCTATT 634948 37 100.0 35 TGCTTCTATT ..................................... TTTTGCTGTGTCGGGTCAGCCGGGGCTGATCAATG 635020 37 100.0 37 CTGATCAATG ..................................... TGGGAAAGTCTGACACGAACCAAGGAGACAGAACGAT 635094 37 100.0 39 ACAGAACGAT ..................................... CCTGGCGCTGGATCGCAAGGCGCTGCTGGCGGGTGGCCA 635170 37 100.0 34 CGGGTGGCCA ..................................... TCGCCACTGACTGATGAGCAGGAGAAATATCTGG 635241 37 100.0 36 AAATATCTGG ..................................... TTTATGCGCAGAGAATCAAACATCCCGAGCAAATAC 635314 37 100.0 36 GAGCAAATAC ..................................... TCCGACCTCTGCGGCGTGGCCGTCACGCCAAGGATT 635387 37 100.0 34 GCCAAGGATT ..................................... TTTTGCTGTGTCGGGTCAGCCGGGGCTGATCAAT 635458 37 100.0 35 GCTGATCAAT ..................................... TTTTGCTGTGTCGGGTCAGCCGGGGCTGATCAATG 635530 37 100.0 37 CTGATCAATG ..................................... GTCAAAACTCCAATGCCAAACTCAGTGATAGACGCAG 635604 37 100.0 35 ATAGACGCAG ..................................... ACTGTGGGGCGCTTTGGGCAGAGTTGACGTTGTGG 635676 37 100.0 36 GACGTTGTGG ..................................... TTTTGGTGGTGTGGGTTGTGGGTAAGTTACTGAAAT 635749 37 100.0 37 TTACTGAAAT ..................................... CCAGAAACCTGAACATCAATACCCGTTAAAGCGTCAG 635823 37 100.0 34 AAAGCGTCAG ..................................... AGTATGAGTCTCAAGCTGACGATCTGGATGGTAT 635894 37 100.0 37 TGGATGGTAT ..................................... ATCGATCTATCACACCGCCTTTGGCATACCCACCAAG 635968 37 100.0 36 ACCCACCAAG ..................................... ATGTATACAGGGAGCTGTCAGCCCTTAAAGATGAAA 636041 37 100.0 37 AAAGATGAAA ..................................... GATTTTATGACGGAACCAGGCCAGCAACCGGAGCATC 636115 37 100.0 34 CCGGAGCATC ..................................... TCGTCACAATACCGGGGTCAGGCTCCGTCAATAT 636186 37 97.3 CCGTCAATAT ....................................A TTTTTATAC ========== ====== ====== ====== ========== ===================================== 88 37 35 CCTGGAATGCCTGATCCACGACAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:51.35%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.20,-3.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [238,264] Score: 0/0.18 # # Final direction: F [5.18,0.37 Confidence: HIGH] >NC_012214 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 930383 29 100.0 32 TAGTTTTAGA ............................. CCTCGCGTCCGTGCGGGGCTTTGCTATCATTA 930444 29 100.0 32 GCTATCATTA ............................. TTTATGACGCTGATTATTATCAGGCTAACCAT 930505 29 100.0 32 GGCTAACCAT ............................. CCGGAAATTTATTTGTGAGTCGGGGAATTTGG 930566 29 100.0 32 GGGAATTTGG ............................. CGGGTTAAATGACGTCATGGCGACAGCATGAA 930627 29 75.9 40 ACAGCATGAA ......................------- ATAAACCGAGTATCGAATAACGTTACCGTGGCCACCATCC 930696 29 100.0 32 GCCACCATCC ............................. GGGAGAACTTGCTTATTATCTCAAACAAAGCG 930757 29 93.1 32 AAACAAAGCG .............A......T........ CCGTGTTGAAGCCATTGGTGTTACCTCTATTT 930818 29 96.6 32 ACCTCTATTT .............A............... GACGTAACAGTAAATGCGCCGGTTCGCGACAA 930879 29 100.0 32 TTCGCGACAA ............................. AGGTTAGAAACGAACAAGTCGGCATCAACGCC 930940 29 100.0 32 CATCAACGCC ............................. CTTTGATGATAATTTTCTTGCTTCTATTACTA 931001 29 100.0 TCTATTACTA ............................. TCCCGCTTTC ========== ====== ====== ====== ========== ============================= 11 29 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [5,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-13.40,-12.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [536,135] Score: 0.18/0.18 # # Final direction: F [1.73,0 Confidence: HIGH] >NC_012207 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3065406 36 100.0 35 AGTCGTCGTA .................................... ACTTGCGCGCACAACGCATCCGCCATCCACGGGGC 3065477 36 100.0 37 TCCACGGGGC .................................... CTGAAAGGGGGACTGTGGACGAGTTCGCGCTCAAAAT 3065550 36 100.0 38 CGCTCAAAAT .................................... GCGAGAATAAGATTGTCAGGCTGGTGCTGCGTTTCCGT 3065624 36 100.0 36 GCGTTTCCGT .................................... CCGCTGGGGGCAGGCCCAGGTGGGACGGTTCCTCGC 3065696 36 100.0 36 GGTTCCTCGC .................................... CCGCTGGGGGCAGGCCCAGGTGGGACGGTTCCTCGC 3065768 36 100.0 43 GGTTCCTCGC .................................... TTCGGGAGCATGCCGCAGCTGCGGATGTGGTGCTGGATTTCGA 3065847 36 97.2 41 TGGATTTCGA ....A............................... ACGTTGGAAGCGTTTCGAGCGTACGGACTTTCCGGATGCAG 3065924 36 100.0 CCGGATGCAG .................................... AGGCGCTTCG ========== ====== ====== ====== ========== ==================================== 8 36 38 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [150,902] Score: 0.18/0.18 # # Final direction: R [0.41,0.92 Confidence: MEDIUM] >NC_012207 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3066144 36 100.0 38 TCGGTGTCGA .................................... TTGAACACGCCGATACCTATTTGGTCGGGAGTGATAAA 3066218 36 100.0 35 GAGTGATAAA .................................... TGACAGGGTGCGGTGGTCGCTGATCGGCTCCCCGA 3066289 36 100.0 37 GGCTCCCCGA .................................... CGGACTTGATCGACGCGAACCTGTCTGACGCGAACCT 3066362 36 100.0 37 ACGCGAACCT .................................... GGCTGGAAAAGGGCGCGGGGCAACCGCATCGTCAAGA 3066435 36 100.0 36 ATCGTCAAGA .................................... GCGTTGTGGTCGTGTCGTGGAGCCTGTATTTCGCTG 3066507 36 100.0 36 TATTTCGCTG .................................... CATTAGTTGGTGTTGTGATCGCTAAACGCCGGGGCA 3066579 36 100.0 CGCCGGGGCA .................................... CTATCCGCGG ========== ====== ====== ====== ========== ==================================== 7 36 36 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [888,247] Score: 0.18/0.18 # # Final direction: R [0.18,0.74 Confidence: MEDIUM] >NC_012214 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 951489 28 100.0 32 TAGAGTAACG ............................ ATCACCGCTTCCCCCCTACCTTTGCAGTCTCG 951549 28 100.0 32 TGCAGTCTCG ............................ TGCCGGACAGCGTGATGATTTTCAATAAACCA 951609 28 100.0 32 CAATAAACCA ............................ GTTCCAGGCTTGCCGCACATCACCAGCCCACC 951669 28 100.0 32 CCAGCCCACC ............................ ATTGACGAAATTTTGACAACGCTGAAACTGCC 951729 28 100.0 32 TGAAACTGCC ............................ CCCGTTGTGGCTCAAAGCCGGAGATCAGCACC 951789 28 100.0 32 GATCAGCACC ............................ TCTACGGCGAGTAGAAAATAACTATCAAGCAG 951849 28 100.0 32 TATCAAGCAG ............................ GGAAACGAACAGCGTTTTCCACTGCATTAATG 951909 28 100.0 32 TGCATTAATG ............................ CATTCGTCTTGCCATCTCTTCGACCGGCAGCA 951969 28 96.4 32 ACCGGCAGCA ...........T................ CGGGATAGCGCCGGGAAAATCAGTTGCAACGC 952029 28 92.9 GTTGCAACGC ...........T.........C...... CTGAAACCGT ========== ====== ====== ====== ========== ============================ 10 28 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [58.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [187,231] Score: 0/0.18 # # Final direction: F [1.92,0 Confidence: HIGH] >NC_012207 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 3068232 35 100.0 40 GTGAGGTTGG ................................... CACGGACGAGCTGGACCGCATCAGCGATGCTGAGCTGAGG 3068307 35 100.0 38 TGAGCTGAGG ................................... CTTGTCTCAATCGTGCCGTCTGCGGTGACACGCTCCAA 3068380 35 100.0 41 CACGCTCCAA ................................... CTCGACGATTGGGACATCGACATCGACGCGATCGTCGACGA 3068456 35 97.1 42 TCGTCGACGA ..........T........................ CGTGATCTTCTCTCCTGGCGAGGTCAAGGAAATCGATGTGGA 3068533 35 100.0 37 TCGATGTGGA ................................... CCACCAGGATCAGCGCCAAGCCAGTTAGCGCAATCCA 3068605 35 100.0 37 GCGCAATCCA ................................... CCTCCCGGACCATCTGCAGCTCGCCCGGGTCCATGCG 3068677 35 100.0 38 GGTCCATGCG ................................... CCGGAGTCATCCGCGCGGGCCGGCGCGATTGTTGCCGG 3068750 35 91.4 29 TTGTTGCCGG ................................--- TCCGCGAAATTCACTGCGCGTTATTCAAG 3068814 35 100.0 42 GTTATTCAAG ................................... CCCGAGCCGACCATCCGCATCACACCGAAAGGGTTGGCGCAA 3068891 35 100.0 37 GTTGGCGCAA ................................... CACGTGGGGAGAGGGAATGGCAATGATGGTCGACGAA 3068963 35 100.0 41 GGTCGACGAA ................................... CCTCGGACAGCATCTCCCCGGGCGGGCAGCAGATATCCCAT 3069039 35 100.0 42 GATATCCCAT ................................... CCGACCCGTGGCCGCCAGGTTGCCGCCGCCGTTGCTCACCTG 3069116 35 100.0 38 TGCTCACCTG ................................... CCCGGAAGTCAACTAGAGCGGGTGTCGAACGCTGCCCG 3069189 35 100.0 38 ACGCTGCCCG ................................... CCTAGGCGGCCCCGGCGAGGCTGGGGGCGGTTTCACGC 3069262 35 100.0 41 GGTTTCACGC ................................... CGCGGAGCTGCGGCGCCGGATGATGGCGTTGCTCAAGAGCA 3069338 35 100.0 40 CTCAAGAGCA ................................... CTCAAAAACGGGGACGGCATGCTGCATGCCCTAACGTCGT 3069413 35 100.0 39 CTAACGTCGT ................................... CCAGCGCAGACGGCAGCCCCGAGTACTCGCTCTCCTCAG 3069487 35 100.0 38 CTCTCCTCAG ................................... CAGGCTGAAATTGAAGCCGGAAATGACGACGCATTGGT 3069560 35 100.0 36 ACGCATTGGT ................................... CCTAAGCCCGCTAATCCCGCACAAGTGGTCAGAAAA 3069631 35 100.0 40 GGTCAGAAAA ................................... CCTGATGATTGGTCGGCGTATGACGTGCTACTGAGGTGTT 3069706 35 100.0 39 CTGAGGTGTT ................................... CACCCCTGAGCCACGGCATGTGCACGGCTCCGTGTTCAA 3069780 35 100.0 40 CCGTGTTCAA ................................... CTCGATGAATGATGCGCGCCAGCGGTAACGCGTGGGATGT 3069855 35 100.0 37 CGTGGGATGT ................................... CTCTGAAAATTCGTGGTCAACGAATTGTCGTCGAAAT 3069927 35 100.0 36 TCGTCGAAAT ................................... CACGGGCCGTGGGGCACTTACGGCGACGGCGCACAT 3069998 35 100.0 38 CGGCGCACAT ................................... CCCCCTAGCCACGCCTGCCGTGCCATGCCGCGCCGCGA 3070071 35 100.0 37 CGCGCCGCGA ................................... CTTGGTCAAAAGCTGTCGCCCAAGCATGAGGCAAAAA 3070143 35 100.0 42 GAGGCAAAAA ................................... CACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTATG 3070220 35 100.0 39 ACCCTCTATG ................................... CGTGCAAGAATTCCGGGTTGCAGTGCAACACGGTTTTAA 3070294 35 100.0 ACGGTTTTAA ................................... CTCTATGGAC ========== ====== ====== ====== ========== =================================== 29 35 38 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [35.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [112,48] Score: 0.18/0.18 # # Final direction: R [0.18,1.42 Confidence: HIGH] >NC_012207 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3068156 36 100.0 40 NNNNNNNNNN CA.G...GGG.GGT..A................... TCGCGGCGAGCACGTCTCACCCAGCAGGCGGTGAGGTTGG 3068232 36 100.0 39 NNNNNNNNNN .................................... ACGGACGAGCTGGACCGCATCAGCGATGCTGAGCTGAGG 3068307 36 100.0 37 NNNNNNNNNN .................................... TTGTCTCAATCGTGCCGTCTGCGGTGACACGCTCCAA 3068380 36 100.0 40 NNNNNNNNNN .................................... TCGACGATTGGGACATCGACATCGACGCGATCGTCGACGA 3068456 36 100.0 41 NNNNNNNNNN ..........T......................... GTGATCTTCTCTCCTGGCGAGGTCAAGGAAATCGATGTGGA 3068533 36 100.0 36 NNNNNNNNNN .................................... CACCAGGATCAGCGCCAAGCCAGTTAGCGCAATCCA 3068605 36 100.0 36 NNNNNNNNNN .................................... CTCCCGGACCATCTGCAGCTCGCCCGGGTCCATGCG 3068677 36 100.0 37 NNNNNNNNNN .................................... CGGAGTCATCCGCGCGGGCCGGCGCGATTGTTGCCGG 3068750 36 100.0 25 NNNNNNNNNN ................................TCCG CGAAATTCACTGCGCGTTATTCAAG 3068811 36 100.0 41 NNNNNNNNNN .................................... CCGAGCCGACCATCCGCATCACACCGAAAGGGTTGGCGCAA 3068888 36 100.0 36 NNNNNNNNNN .................................... ACGTGGGGAGAGGGAATGGCAATGATGGTCGACGAA 3068960 36 100.0 40 NNNNNNNNNN .................................... CTCGGACAGCATCTCCCCGGGCGGGCAGCAGATATCCCAT 3069036 36 100.0 41 NNNNNNNNNN .................................... CGACCCGTGGCCGCCAGGTTGCCGCCGCCGTTGCTCACCTG 3069113 36 100.0 37 NNNNNNNNNN .................................... CCGGAAGTCAACTAGAGCGGGTGTCGAACGCTGCCCG 3069186 36 100.0 37 NNNNNNNNNN .................................... CTAGGCGGCCCCGGCGAGGCTGGGGGCGGTTTCACGC 3069259 36 100.0 40 NNNNNNNNNN .................................... GCGGAGCTGCGGCGCCGGATGATGGCGTTGCTCAAGAGCA 3069335 36 100.0 39 NNNNNNNNNN .................................... TCAAAAACGGGGACGGCATGCTGCATGCCCTAACGTCGT 3069410 36 100.0 38 NNNNNNNNNN .................................... CAGCGCAGACGGCAGCCCCGAGTACTCGCTCTCCTCAG 3069484 36 100.0 37 NNNNNNNNNN .................................... AGGCTGAAATTGAAGCCGGAAATGACGACGCATTGGT 3069557 36 100.0 35 NNNNNNNNNN .................................... CTAAGCCCGCTAATCCCGCACAAGTGGTCAGAAAA 3069628 36 100.0 39 NNNNNNNNNN .................................... CTGATGATTGGTCGGCGTATGACGTGCTACTGAGGTGTT 3069703 36 100.0 38 NNNNNNNNNN .................................... ACCCCTGAGCCACGGCATGTGCACGGCTCCGTGTTCAA 3069777 36 100.0 39 NNNNNNNNNN .................................... TCGATGAATGATGCGCGCCAGCGGTAACGCGTGGGATGT 3069852 36 100.0 36 NNNNNNNNNN .................................... TCTGAAAATTCGTGGTCAACGAATTGTCGTCGAAAT 3069924 36 100.0 35 NNNNNNNNNN .................................... ACGGGCCGTGGGGCACTTACGGCGACGGCGCACAT 3069995 36 100.0 37 NNNNNNNNNN .................................... CCCCTAGCCACGCCTGCCGTGCCATGCCGCGCCGCGA 3070068 36 100.0 36 NNNNNNNNNN .................................... TTGGTCAAAAGCTGTCGCCCAAGCATGAGGCAAAAA 3070140 36 100.0 41 NNNNNNNNNN .................................... ACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTATG 3070217 36 100.0 38 NNNNNNNNNN .................................... GTGCAAGAATTCCGGGTTGCAGTGCAACACGGTTTTAA 3070291 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 30 36 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [36,50] Score: 0/0.18 # # Final direction: R [0,1.42 Confidence: HIGH] >NC_012214 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 941216 29 100.0 32 NNNNNNNNNN ............................. CCTTCCAGCCCTCTGAGTGAGGGCTTTCCGTA 941277 29 100.0 32 NNNNNNNNNN ............................. GCTTAATGCCTTTGCCGATGCATTTTCCTTTT 941338 29 100.0 32 NNNNNNNNNN ............................. ACAGTCAACCAGTACCACTCCATTTTTTTCGT 941399 29 100.0 32 NNNNNNNNNN ............................. AAAGTTTGGCAGATGCGCTACAAGATTGAAGG 941460 29 100.0 32 NNNNNNNNNN ............................. GAAAAAATATCCGACCTCCGCGAAAAGCAGGA 941521 29 100.0 33 NNNNNNNNNN ............................. CCTGGTTGTAGGAGTGGGGCCGACCCGTACCGG 941583 29 100.0 32 NNNNNNNNNN ............................. GCCACTAGAATCAGCAGCCCGCATCAATTGCC 941644 29 100.0 32 NNNNNNNNNN ............................. ACGGATGTTGATATTGGGGACGTAATAGGTTG 941705 29 100.0 32 NNNNNNNNNN ............................. GTCAGGTAAAAGGACACTCGGTGGAAATAATT 941766 29 100.0 32 NNNNNNNNNN ............................. CATGGCCACCCGGCCAACCACGATCCAGTTAT 941827 29 100.0 32 NNNNNNNNNN ............................. CTGCAATAGCAGTACTCGTGCCTTTTTCTTAT 941888 29 100.0 32 NNNNNNNNNN ............................A TATGAATGAATATCTACGCAGTAAATGGGAAT 941949 29 100.0 32 NNNNNNNNNN ............................. GTGATCTGCGCTGCTTCTGCCACTGTGCATTC 942010 29 100.0 32 NNNNNNNNNN ............................. TTGTCGCAATCGCTGCTGGTGAGTGGTTCGTG 942071 29 100.0 32 NNNNNNNNNN ............................. TGCGGGTTGGCCAGATTGGGCGCACGGCTCAT 942132 29 100.0 1 NNNNNNNNNN .........CGCATATGC...GAT..A.C NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 16 29 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [92,30] Score: 0.18/0.18 # # Final direction: F [0.86,0.37 Confidence: MEDIUM] >NC_012438 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1082776 30 100.0 38 CTAAAAGAAG .............................. TGGTTGTTTTATGGTTGCGTTTATTATGCTGTCTATTA 1082844 30 100.0 36 CTGTCTATTA .............................. TTTGGTAGACAGCATAGTAGCTCTTACCCGAACCAG 1082910 30 100.0 38 CCCGAACCAG .............................. CTTCTGTTCCTTCATCATCATCAAAAATCAGAGTGTAG 1082978 30 100.0 35 CAGAGTGTAG .............................. GGACCTTCACCTTCAAATTTGATTTTCACGCCTGA 1083043 30 100.0 38 TCACGCCTGA .............................. ATTATAGTTAATAAAAAATATATAGGTACCATAAAAAA 1083111 30 100.0 37 CCATAAAAAA .............................. ACATAAAGAAAGGTAATATTGTAGATAAAACTTGTGG 1083178 30 100.0 37 AAACTTGTGG .............................. AACTGCATTATTTGAATATTCAAATATTCGCATAAAG 1083245 30 100.0 36 TCGCATAAAG .............................. TGAATGATGTGTTTATATGAATTATGAATGATGTGT 1083311 30 100.0 37 AATGATGTGT .............................. TTGTTTGATATTCATTATATGTATTGTTATTGATGTT 1083378 30 100.0 37 TATTGATGTT .............................. TTGTTTGATATTCATTATATGTATTGTTATTGATGTT 1083445 30 100.0 TATTGATGTT .............................. TTGTAGATGT ========== ====== ====== ====== ========== ============================== 11 30 36 GTTTTTAGAGTGCCTATGAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-0.90,-0.90] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [279,210] Score: 0/0.18 # # Final direction: F [5.27,0 Confidence: HIGH] >NC_012416 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 842142 24 100.0 57 NNNNNNNNNN ........................ GATCTATGCCGAGATACCGCGGCGGTATGACGGTTCGCGGTGGCATGACGATAAGCT 842223 24 100.0 44 NNNNNNNNNN ........................ ATGAGATACCGCGAATGAATCGCGGTATGACGTAACGACAAATT 842291 24 100.0 50 NNNNNNNNNN ........................ GATCTATGCTAAGAGATACCGTGACGGTTCGCGGTGGCATGACGATAACC 842365 24 100.0 44 NNNNNNNNNN TCAT..........TA........ ATGAGATACCGCGAATGAATCGCGGTATGACGTAACGACAAATT 842433 24 100.0 1 NNNNNNNNNN ........................ NNNNNNNNNN ========== ====== ====== ====== ========== ======================== 5 24 48 CGTCATCCCGCTACGTGTTAGCGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [78,121] Score: 0/0.18 # # Final direction: F [0.68,0.37 Confidence: LOW] >NC_012438 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1002144 30 100.0 37 TAAAAGAAGG .............................. TCATGTAAATCTCTCAATTGTCACTTGAGAATAGCAT 1002211 30 100.0 36 AGAATAGCAT .............................. TTGCGTTCAAAATTCGCAAACTATTGAATACTACTG 1002277 30 100.0 36 AATACTACTG .............................. CGCGGTTTTCAAGACTATTGAAAAAATCAATAGAGG 1002343 30 100.0 36 TCAATAGAGG .............................. TATACTTTAGGTCTATTCCGTTTTTTTCTGTTGAAA 1002409 30 100.0 36 TCTGTTGAAA .............................. GTTGTTCTATCGGAGCTTTTAGTTCAAGCTGTACCA 1002475 30 100.0 37 AGCTGTACCA .............................. AAACTTCAATTAGCTGGAGTTTTAAATGGTTTAAATA 1002542 30 100.0 36 GGTTTAAATA .............................. ATTTTTGATATGTAAATTGTAATATAAGATTAGTTA 1002608 30 96.7 36 AGATTAGTTA .................G............ TTGTTGTTTCTGTGGGTTCTTTCCCTGTCCTGTTGG 1002674 30 100.0 36 GTCCTGTTGG .............................. CGTTCAATACAGGGTCGTCGTATGCATTCTGATGCG 1002740 30 93.3 TTCTGATGCG ........C........G............ TTATTCTTGC ========== ====== ====== ====== ========== ============================== 10 30 36 GTTTTTAGAGTGCCTATAAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.90,-0.90] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [282,846] Score: 0.18/0.18 # # Final direction: F [5.18,0.18 Confidence: HIGH] >NC_012438 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1003192 30 96.7 35 AAATTAACGG .............................T TCTATAGACACGAGCTAGCGATTGCTGGTAATCTC 1003257 30 100.0 35 TGGTAATCTC .............................. GTATTGCCGTCTAGAATATTTCACTCCCCACATTT 1003322 30 100.0 34 CCCCACATTT .............................. TGTTGTTTATTGTATACGAGATTTTTCCAGTGAA 1003386 30 100.0 TTCCAGTGAA .............................. ATTTTAGCAA ========== ====== ====== ====== ========== ============================== 4 30 34 GTTTTTTCCCGACTATGAGGGAATTGAAGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.70,-6.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1330,200] Score: 0.18/0.18 # # Final direction: F [0.55,0.41 Confidence: LOW] >NC_012438 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1005986 29 100.0 36 CCTCAAAGAC ............................. TTCTATATTTGTTATTGTTCAAAAAGACGGATATGG 1006051 29 100.0 36 ACGGATATGG ............................. CACGCTGGATAAGAAAAGGGAAAAGGACATCAGGAC 1006116 29 100.0 37 ACATCAGGAC ............................. CAGTCTTAATTATTATAAAACTGATACAGAAGATAAT 1006182 29 100.0 36 AGAAGATAAT ............................. GTAAACTTTCACTTCTTCGCTTTTTGTTTCTATTAA 1006247 29 100.0 36 TTTCTATTAA ............................. TTTGACGAGAAAATTGCATCTCTCTATACCTCTGCG 1006312 29 100.0 35 TACCTCTGCG ............................. GTAGATAGTATTACAGTTTTGTATAAAGCCATTTT 1006376 29 96.6 AAGCCATTTT .....C....................... AAAACGCGAAT ========== ====== ====== ====== ========== ============================= 7 29 36 GTTTTTTCCCGACTATGAGGGAATTGAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.62%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.70,-6.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [61.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [442,136] Score: 0.18/0.18 # # Final direction: F [0.96,0.27 Confidence: MEDIUM] >NC_012438 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1081526 29 100.0 37 GCGAATGAAA ............................. GCAGTCAATGATAAATCTTTGTTTACTCTGTATTTTG 1081592 29 100.0 36 CTGTATTTTG ............................. ATAGCAAAACCTGCTATGCCAAATCAGGTAAATCAG 1081657 29 100.0 36 GGTAAATCAG ............................. TATATTAGAAAGGATTAAGTAATTGAAAAATAAGGG 1081722 29 100.0 AAAATAAGGG ............................. TAATAATGCCTCCTTTGATTTTAATTGTTTAATACC ========== ====== ====== ====== ========== ============================= 4 29 36 GTTTTCTCCCGACTATGAGGGAATTGAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.17%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-6.00,-5.80] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [775,116] Score: 0.18/0.18 # # Final direction: F [0.18,0 Confidence: MEDIUM] >NC_012438 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 1580054 31 100.0 37 TAAAAGAAGG ............................... ACCTTTTCCGATGATGTTTGAATGAGTGTACCAGTGT 1580122 31 100.0 36 GTACCAGTGT ............................... CTCTTCTTTGGACTAAAACTTTACCAACCATGTTGC 1580189 31 100.0 38 ACCATGTTGC ............................... TCAACTTGTACTAAACCTGGTGATACATAGACCACCAG 1580258 31 100.0 36 AGACCACCAG ............................... TATAGACTCTCGTAAAAATTGAATATTTTCATTTCA 1580325 31 100.0 37 TTTCATTTCA ............................... ATAGCTTTGCAAGCATTTTGTCATGATTTGCTTGAAT 1580393 31 100.0 35 TTGCTTGAAT ............................... TAACATGATTGAAGCTATAGTTGATGTTGATGTTG 1580459 31 100.0 37 GTTGATGTTG ............................... TACTCTTCAAAGTTTTATGAAAGCATGACTATACTTG 1580527 31 100.0 36 ACTATACTTG ............................... TCTCGAAACTCGAGATAAAACTTATCACTACCGCCC 1580594 31 100.0 38 ACTACCGCCC ............................... CTAATTGGATATACACATTATCTCTTTCAGTGAATATC 1580663 31 100.0 37 AGTGAATATC ............................... TTAATTAACTGAAAGTATACATCATCTTTTTCCTTGA 1580731 31 100.0 TTTTCCTTGA ............................... TATAAAATCA ========== ====== ====== ====== ========== =============================== 11 31 36 GTTTTTCTCCCGACTATGAGGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.06%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-6.00,-6.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [256,107] Score: 0.18/0.18 # # Final direction: F [4.68,0 Confidence: HIGH] >NC_012438 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1299664 30 100.0 35 TAAAAGAAGG .............................. TTTCTTCATCTTTAAGGTAAAAATTCAAACCTGTC 1299729 30 100.0 37 CAAACCTGTC .............................. CTTCCTTTTTAAACGGTTTGATTCCATAGATTTCATC 1299796 30 100.0 36 AGATTTCATC .............................. ACATCCTGAGTGGATTCTGTTGTATCCTTTATCATG 1299862 30 100.0 37 CTTTATCATG .............................. CTTTTATTTTTTCATCTTTAGTAACTATAAACACGCC 1299929 30 100.0 36 TAAACACGCC .............................. TAACCTTTTTCATAAAAAGATATTGTTTTTATATCT 1299995 30 100.0 38 TTTTATATCT .............................. CCATAATCGTAAGACAGAAAAATATTTTCTGTCCCTAC 1300063 30 100.0 36 CTGTCCCTAC .............................. TTCTTTTGAATATATATACTTCAGTTTGAAGTCAAA 1300129 30 100.0 37 TGAAGTCAAA .............................. TTTTTCTGATTTTGTTATAATGAAGGAGCCAGTATAT 1300196 30 100.0 37 GCCAGTATAT .............................. TTGTTTGTTTTGTCAGATAGATTGCTAACAACTTCTC 1300263 30 100.0 36 ACAACTTCTC .............................. TTTGACTCCAGTAAACGGCACTATAGAGAGTACAAA 1300329 30 100.0 36 AGAGTACAAA .............................. GCAGTTGCATACATCAATTCCGTCACTATCTTGTGG 1300395 30 100.0 36 TATCTTGTGG .............................. AAAAGATTGCTTGATAGGAACCATGTTTTTTTAATT 1300461 30 100.0 36 TTTTTTAATT .............................. CGTTTTTTGGATCGCAATGAGTTACATACTCAACGG 1300527 30 100.0 37 TACTCAACGG .............................. ATCACCTCCTTTATTAAATAATTTCTACTGCTGGTTA 1300594 30 100.0 38 CTGCTGGTTA .............................. ACTTTCCTATATACACTCCCCCGATTATTGCTTCTTCT 1300662 30 100.0 38 TGCTTCTTCT .............................. CACTATTGTATTTTTAGAATCACAATTTGTACTTAGGG 1300730 30 100.0 38 GTACTTAGGG .............................. GCAAATGCTGGCATGAACGCTGTCAAGGCCAAGCCCTT 1300798 30 100.0 36 CCAAGCCCTT .............................. TATTTCCCATTTGGAAATAGATGGGTAGATAAATTC 1300864 30 100.0 36 AGATAAATTC .............................. TGACGAAAACAATGTTGTTATTCGCGAGAACGAACA 1300930 30 100.0 36 AGAACGAACA .............................. TATACTCGAATTGGGTGGTTGGGGTCCTCCAGTTCC 1300996 30 100.0 CTCCAGTTCC .............................. CTTCATACATGATACTACCTCCTATAAATATAAAAATT ========== ====== ====== ====== ========== ============================== 21 30 36 GTTTTTCTCCCGACTATGAGGGAATTGAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-6.00,-6.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [280,182] Score: 0/0.18 # # Final direction: NA [0,0 Confidence: NA] >NC_012438 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1493362 29 100.0 36 AAATTAACGG ............................. GATTCGATGTGATTCATTAATAATAAGTACTTAGCT 1493427 29 100.0 37 GTACTTAGCT ............................. GGATAATAAGGAAAAATTTAATAATCTTATAAAGGGG 1493493 29 100.0 36 TATAAAGGGG ............................. CTGGAATCAAAACATTCCACATCCCTGTCTCACATT 1493558 29 100.0 36 GTCTCACATT ............................. TTGATATTCTATACTAAAATCACTTGTTGGTATTCG 1493623 29 100.0 36 TTGGTATTCG ............................. TGGGTGCTGGAAGGCTAGAAGAAGACAGCTTATCTT 1493688 29 100.0 38 AGCTTATCTT ............................. ATCTCAAGGCCCGCAGCAATTTCTAAATCTTGAATATC 1493755 29 100.0 42 CTTGAATATC ............................. ATTATCTAACTTATATAAGTGGAAAATGTAACTCTCCCCTTC 1493826 29 100.0 35 TCTCCCCTTC ............................. TTTCAGATGCTGTTTGAATAATGGCGCCTGTCTGA 1493890 29 100.0 39 GCCTGTCTGA ............................. GATGTTATCGACACAGACGGAAATATTAACTTTTCAAAA 1493958 29 100.0 37 CTTTTCAAAA ............................. CATTTCTTTTATAGTGGCTCCCTTCAATGGAAATTCA 1494024 29 100.0 37 TGGAAATTCA ............................. AAAGGTCTCTTTTCATTATTACCCCCTTTTCTAATTC 1494090 29 100.0 37 TTTCTAATTC ............................. CTTAATTCTTCAACTTCAAAAGATTCTTCTTGTAAAC 1494156 29 100.0 37 TCTTGTAAAC ............................. AATTAACTCTTCAAAATAACACCAACCATCGTCAGAG 1494222 29 100.0 37 ATCGTCAGAG ............................. AGACTCTATGTGACAGGTTTAATAACATTTTGATAAG 1494288 29 100.0 35 TTTTGATAAG ............................. TAAATACACATTTGAATCTCCTTCCGTTAAAATTA 1494352 29 100.0 36 GTTAAAATTA ............................. CTAGGATGTCTCTTCTCGTTAGTCTTTCTAGAAGAC 1494417 29 100.0 37 TCTAGAAGAC ............................. CTTAATTCTTCAACTTCAAAAGATTCTTCTTGTAAAC 1494483 29 100.0 37 TCTTGTAAAC ............................. AATTAACTCTTCAAAATAACACCAACCATCGTCAGAG 1494549 29 100.0 37 ATCGTCAGAG ............................. AGACTCTATGTGACAGGTTTAATAACATTTTGATAAG 1494615 29 100.0 TTTTGATAAG ............................. TGAAAAATTT ========== ====== ====== ====== ========== ============================= 20 29 36 GTTTTTTCCCGACTATGAGGGAATTGAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.62%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.70,-6.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [387,59] Score: 0.18/0.18 # # Final direction: F [0.55,0 Confidence: HIGH] >NC_012438 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 235671 29 100.0 36 AAATTAACGG ............................. GAACAGTTAACTGGGTGGCTTCTAGAAAGACTGGAC 235736 29 100.0 36 AAGACTGGAC ............................. GTTCTTGTCTCTTTCTGCATACTGATATTTAGCTAG 235801 29 100.0 36 ATTTAGCTAG ............................. AAAATCAAATTTAAGTAGTGTTTTCAAACGTTTCAC 235866 29 100.0 36 AACGTTTCAC ............................. TCACTATTTTCTGGAATAAGTACATTCCATGATGCC 235931 29 100.0 36 CCATGATGCC ............................. TTTAAAAAAGCTGTGGGGTATTAAATATGAAAGATG 235996 29 100.0 37 ATGAAAGATG ............................. GTGAATTTTTATTTTTGTAGATGAAGTTTCAATGAAT 236062 29 100.0 36 TTCAATGAAT ............................. ATGCAAGTACTCTGTGAGACAGGTTTAGTAACATCT 236127 29 100.0 36 AGTAACATCT ............................. GGAAAACAAACAGACGAATTTGGAGGATACCAACCA 236192 29 100.0 37 ATACCAACCA ............................. ATAGTTCATAAAATTCATCATTTCTTATTGTATAATA 236258 29 100.0 36 TTGTATAATA ............................. TTCTGAATCACAGTAATCAATGTAGTGAGTTGTTAA 236323 29 100.0 37 GAGTTGTTAA ............................. CTTTAACCATGATACATCCTCCTTTTAAAATTTTTTG 236389 29 100.0 36 AAATTTTTTG ............................. TTTACTGTTATCATGTTACACCTCCAAAAAATTTTT 236454 29 100.0 36 AAAAATTTTT ............................. AACATTATTCATAAAACATTCAAAGGTTGGCACGCG 236519 29 100.0 37 TTGGCACGCG ............................. CTGTATATCTGATGATAGGTTATCGAACTCATTATTC 236585 29 100.0 36 CTCATTATTC ............................. CTTCTATTTCTCTTAAACTTAACCAGATCGGATCTT 236650 29 100.0 ATCGGATCTT ............................. AGTGTAGACT ========== ====== ====== ====== ========== ============================= 16 29 36 GTTTTCTCCCGACTATGAGGGAATTGAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.17%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-6.00,-5.80] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [409,803] Score: 0/0.18 # # Final direction: F [0.27,0 Confidence: MEDIUM] >NC_012438 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 237034 29 100.0 38 ATTTTCTCTG ............................. ATATCAAGATGTTATCAATCGGATAGGTCAAATAGGTT 237101 29 100.0 36 CAAATAGGTT ............................. CTCTAATTGTCACTTGAGAATAGCATGTGAGCAAAT 237166 29 100.0 37 GTGAGCAAAT ............................. TGCCATCAATATTAAGAATTTCTGTCCATCTTTTTTC 237232 29 100.0 37 ATCTTTTTTC ............................. CTCGTCAAATTCCTGGTTTATTATTCTATGATTTTTG 237298 29 100.0 36 ATGATTTTTG ............................. TCTACCACTCTTTTTTGTAACAATAGCTTTGTCATA 237363 29 100.0 CTTTGTCATA ............................. TTTCTCAACT ========== ====== ====== ====== ========== ============================= 6 29 36 GTTTTCTCCCGACTATGAGGGAATTGAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.17%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-6.00,-5.80] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1772,90] Score: 0.18/0.18 # # Final direction: R [0.18,0.27 Confidence: LOW] >NC_012438 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 290882 29 100.0 36 AAATTAACGG ............................. TGCCATCGATTGTTATAATCTCGGTCCACTTTCTTT 290947 29 100.0 35 CACTTTCTTT ............................. TATGCTTTTAGACTAAAATACATTGATAAAATCGA 291011 29 100.0 37 ATAAAATCGA ............................. TTTATTGGAGTTAAATAATGTTACAAATCATCTATGG 291077 29 100.0 36 TCATCTATGG ............................. TCTTCAAAATAATCATACTTTAACCACTCTAAACCT 291142 29 100.0 35 CTCTAAACCT ............................. ACTTTTTCAGGTCAGATAACAGTCACAATCTCTCC 291206 29 100.0 36 CAATCTCTCC ............................. CAGGTTTTTCGTATGGTATAAAAATTCTATTTTTTT 291271 29 100.0 36 CTATTTTTTT ............................. TTTTTTTAAATTCATAATTATATTATCACACTTTTG 291336 29 100.0 39 CACACTTTTG ............................. TCTCATTCTACTCTAAAAATGATGTAAAAAGCATAGAGG 291404 29 100.0 AGCATAGAGG ............................. CTACTCTACC ========== ====== ====== ====== ========== ============================= 9 29 36 GTTTTGTCTGAACTATGTGGGATAGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.07%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [76.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [420,2] Score: 0.18/0.18 # # Final direction: F [0.45,0 Confidence: MEDIUM] >NC_012438 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 755556 29 100.0 37 NNNNNNNNNN T............................ AACTTTGGGGAATAAAGTATTCAAGAGGACAATATCT 755622 29 100.0 36 NNNNNNNNNN ............................. AGAGAGAGTTTTTATACCATACAGTACGCCACTTCA 755687 29 100.0 37 NNNNNNNNNN ............................. TTCCAAGTAGTACATCTTCCATTCATATTTGACAAAT 755753 29 100.0 36 NNNNNNNNNN ............................. AAAAAATGAATAAAGATGTAAAAGAGTTTATCACAT 755818 29 100.0 35 NNNNNNNNNN ............................. TTATCAGAGTATGCTGTTCAAGCCACTCAGGCTTC 755882 29 100.0 37 NNNNNNNNNN ............................. TGAACAATTTGGGATTACAGGCAGGCATAAAAGCAGA 755948 29 100.0 37 NNNNNNNNNN ............................. TAGGAACTATCAGTGATATTGTTTACAAAAGTGAAAT 756014 29 100.0 38 NNNNNNNNNN ............................. CCGAGTTCTGTTGACATCTCACAGCTATTTCCTTATGC 756081 29 100.0 37 NNNNNNNNNN ............................. AGCTTGGGCTAAAACCTCCTTATTATTTAATTTATAG 756147 29 100.0 37 NNNNNNNNNN ............................. TAAAGAGACTTTCACAGAAGCCCCGCCCGCAAGGAGC 756213 29 100.0 36 NNNNNNNNNN ............................. ACTGAGAGAGATGCTCTCAGTGATTAGAGAAGAATC 756278 29 100.0 35 NNNNNNNNNN ............................. GCTCATTTATCAAACTTCTATTACGTGACTGGAGA 756342 29 100.0 37 NNNNNNNNNN ............................. TTGTTAGAGAGTTGATACAGATGATTTATTCACACTC 756408 29 100.0 36 NNNNNNNNNN ............................. TTGAACTCGATAATGGATTGCCGCAAACAGTGAAGA 756473 29 100.0 36 NNNNNNNNNN ............................. AGCAATCTTTTTCAGAAGATTGCTTAACAAGGCCTA 756538 29 100.0 37 NNNNNNNNNN ............................. ATATTTTGATATTTCAGTTCCTATAAGTGGAATATCT 756604 29 100.0 35 NNNNNNNNNN ............................. GACAGCAAATATAATAGATAATTTCTGTATAGCTA 756668 29 100.0 36 NNNNNNNNNN ............................. TATATAGTAAAACATCTCTATATATATGATTACTTT 756733 29 100.0 36 NNNNNNNNNN ............................. TTTATGGACTTTTATGGGTCTTTTATGGGTATTTTA 756798 29 100.0 38 NNNNNNNNNN ............................. TATAAAAACAGAGAATTTATAATTCCAAATGAACTTGA 756865 29 100.0 37 NNNNNNNNNN ............................. CTGTAACAAAATTCAAAGCTATATATGTGGCTATTGA 756931 29 100.0 36 NNNNNNNNNN ............................. ATGAAAATAGTTAATTTTTACGATAGTGGATATCAC 756996 29 100.0 36 NNNNNNNNNN ............................. TTGGTTGAAACAAAAGAAAGCAAGTTGAAAGCCTAT 757061 29 100.0 36 NNNNNNNNNN ............................. ACCGCTCTTTAAGTCAATCGCTTGCTTAAGCAAGCG 757126 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 25 29 36 CTTTATATCCCACATAGTTCAGACAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.52%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [26,375] Score: 0.18/0.18 # # Final direction: R [0,0.59 Confidence: HIGH] >NC_012438 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 788514 30 100.0 32 TTATAATTAT .............................. AAGTCATCTCCTACTAAGTAAAGAGTATTATC 788576 30 100.0 37 GAGTATTATC .............................. TGTTATAATAGATTATAACATTGCTTGACAAAAAGTC 788643 30 100.0 38 ACAAAAAGTC .............................. TATGTTTGTGTATTTATATTTTTTTTAATTATAATTAC 788711 30 100.0 TTATAATTAC .............................. CCTTCTTTTA ========== ====== ====== ====== ========== ============================== 4 30 35 GTTTCAATTCCTCATAGGCACTCTAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.90,-0.90] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [319,249] Score: 0/0.18 # # Final direction: R [0.27,4.5 Confidence: HIGH] >NC_012438 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 968827 30 100.0 38 TAAAAGAAGG .............................. CCTACATCACTTTTTTAGATTTGTCAAATCTAAAGTGA 968895 30 100.0 37 TCTAAAGTGA .............................. CCCATAACACACCTCCTATTTAAATTTTTTTTGGGAC 968962 30 100.0 37 TTTTTGGGAC .............................. CTACTCTAAATAAAGTTTTTCAAGTCCAGAATCAAAA 969029 30 100.0 36 AGAATCAAAA .............................. CTATTTTTCCCATTTAGCTTTCCTATATACACTCCC 969095 30 100.0 38 ATACACTCCC .............................. CAGGGTTGTAAACGATGAAGTGGGGGAATTGTCCCCCA 969163 30 100.0 38 TTGTCCCCCA .............................. TTTGACAGCATCACGCAAAAAGATGAAAGAAAGACCCG 969231 30 100.0 36 GAAAGACCCG .............................. CTCAGATGCACTATCAGAAGAAAGAGATTTGTCTTC 969297 30 100.0 39 ATTTGTCTTC .............................. CATTGCTTTTCTGATTGCAATAAGTCCAACCAAAGCACT 969366 30 96.7 CCAAAGCACT .............................G TGATTTAAAATCTGTTGTGTGAATAAATCCTTTATTTG ========== ====== ====== ====== ========== ============================== 9 30 37 GTTTTTCTCCCGACTATGAGGGAATTGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-6.00,-6.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [139,137] Score: 0/0.18 # # Final direction: F [4.91,0 Confidence: HIGH] >NC_012440 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 120836 37 100.0 36 TATAGAGGAG ..................................... TTTCTGTTTTTTGCTTTTCATATATTTCTTTTATTC 120909 37 100.0 34 TCTTTTATTC ..................................... ATAGGATCAATCTCAACTACATCTTTTTTAAACA 120980 37 94.6 42 TTTTTAAACA .C......A............................ GGATTATTGACACATCATAAGGGTATCCGTGCCTTGCAAGTT 121059 37 94.6 CTTGCAAGTT ...................GA................ GAACTAAATCT ========== ====== ====== ====== ========== ===================================== 4 37 37 CTGTTGAAGTTTTCCCGAGATATAAGGGAATTGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.80,-5.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [363,327] Score: 0/0.18 # # Final direction: F [0.78,0 Confidence: HIGH] >NC_012440 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1254152 29 100.0 36 GGACTTGCAG ............................. AATCAGTCTATAGCAACTTCACCTTTACCTTAAAGG 1254217 29 100.0 37 ACCTTAAAGG ............................. TTCATCTATGGGGAGCAAAGAAAAAACAGAGACTCTT 1254283 29 100.0 38 AGAGACTCTT ............................. GAAGACAAAGAAGGAGTTAGATATTTCATCTCAGCTGG 1254350 29 100.0 36 TCTCAGCTGG ............................. CATTGTATTAACATTCAAGAGATTTGTCAATAGGTA 1254415 29 100.0 36 TCAATAGGTA ............................. TTCAACATTGCTTTCTATTTGGAATGACAAATACGG 1254480 29 100.0 36 ACAAATACGG ............................. CCCTCAACACCTTTAGCTTTCAGTTCGTCTATTTTT 1254545 29 100.0 34 GTCTATTTTT ............................. AAGTTACAGGGAATGTTCCTCTGGTTCTTAGAGG 1254608 29 100.0 35 TTCTTAGAGG ............................. AGGACTGGTTACCTGTCTTTTTTCTTATTTTTTTG 1254672 29 100.0 34 TATTTTTTTG ............................. CTCCATTTTCTTTTCCTCCTTTTTTGTTTGATCG 1254735 29 100.0 38 TGTTTGATCG ............................. TGAGCAGGCAAATATGCTGATAGCTGTTTTCGTTGATA 1254802 29 100.0 TTCGTTGATA ............................. CCATCATTCT ========== ====== ====== ====== ========== ============================= 11 29 36 CTTTCTATCCCACTTAGTTCAAAGAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.52%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [140,359] Score: 0.18/0.18 # # Final direction: R [0,0.45 Confidence: MEDIUM] >NC_012440 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1302353 29 100.0 39 AGAATAGTGG ............................. TTAACAACATCTGTTGCTGTTACTGCAGTTACATCTGTA 1302421 29 100.0 39 TACATCTGTA ............................. GTATCTTCTTCTGCTTCTATATAAGATATAGTTTTACCA 1302489 29 100.0 36 AGTTTTACCA ............................. AAGCGTGTATCTTGTGGTGTAACGAAATTGCGGGAT 1302554 29 100.0 37 ATTGCGGGAT ............................. GTGGAAAGGTTTAAATTTTAATTAGTCCACTGGTGAA 1302620 29 100.0 38 CACTGGTGAA ............................. TTGGAAGTATAACATTTTTAGGCTTTGAAACTTCATCA 1302687 29 100.0 36 AACTTCATCA ............................. TTTCACTCCGGTGGTGTTATCGCTCATTCTGGAATG 1302752 29 100.0 36 TTCTGGAATG ............................. ACCAGTGATGACGAAAGACTTGCAAGGTTCTGGGCT 1302817 29 100.0 37 GTTCTGGGCT ............................. GCAGTTCTTAAAGCTCTGGAATCTATGAATGCAAAGT 1302883 29 100.0 37 AATGCAAAGT ............................. ACTTCCTGATTCTGTTTCAACAACATCCTGCGAAATT 1302949 29 100.0 39 CTGCGAAATT ............................. TTTTTCATAGCTACCCAAATAGGCTTTGCTACTGATGTG 1303017 29 100.0 36 TACTGATGTG ............................. TCTGTTTTAGCAGGGATAACAGTTTTATTAACATTT 1303082 29 100.0 40 ATTAACATTT ............................. CAGCAACAGGTTCAAGTATTTTCTGTATTGCTCCAAAAAT 1303151 29 100.0 36 CTCCAAAAAT ............................. TGTATGTATACCTGTTCTCCTTTTTTGTACTCTACA 1303216 29 96.6 37 GTACTCTACA .............T............... TGAGCGTGTGTTTGCACATACGCAAACACACAAGAAA 1303282 29 93.1 ACACAAGAAA .............T......A........ AATGGAAGTT ========== ====== ====== ====== ========== ============================= 15 29 37 GTTTTCTTTGAACCAAGTGGGATAGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.07%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.60,-0.50] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [360,1218] Score: 0.18/0.18 # # Final direction: F [0.41,0.18 Confidence: MEDIUM] >NC_012440 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1269028 30 100.0 35 AGGCAGATGG .............................. TTATGAGCTGGAAATATCTATAAGAAAAATTGAGG 1269093 30 100.0 34 AAAATTGAGG .............................. CTTTCTGCTCTACATATATTGTTTTTCCTGTGTA 1269157 30 100.0 36 TTCCTGTGTA .............................. CCTTCTTTGCTTGAAAATTGATCAGACGATAAATGA 1269223 30 100.0 34 CGATAAATGA .............................. GAAGATCATAAAACTTATATCTAAAACTCCCTAC 1269287 30 96.7 AACTCCCTAC ............................G. GGAAGATA ========== ====== ====== ====== ========== ============================== 5 30 34 GTTTTTTCTGAACCAAGTGGGGTATAAATT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.80,-1.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [298,520] Score: 0/0.18 # # Final direction: F [1.05,0 Confidence: HIGH] >NC_012468 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 1687993 19 100.0 137 NNNNNNNNNN GA..CTGAG........AC TGGTTGAAGCGGACGTACTTGCTGACGTACTTGCGCTTGTCGAAGCCGATGTACTTGCACTTGTCGATGCTGACGTGCTTGCCGATGTACTTGCTGACGTACTTGCGCTTGTTGACGCCGATTCAGACGCTGAGATA 1688149 19 100.0 95 NNNNNNNNNN ....CTGAG.....G..GC TTGTACTTGCTGAAGTCGACGCACTGGTTGAGGCCGATTCAGATGCTGACGTACTTGCACTTGTTGACGCCGATGTACTTGCTGAGGTCGACGCG 1688263 19 100.0 119 NNNNNNNNNN .....TGA...G..C.TAC TTGCACTTGTCGATGCTGACGTGCTTGCCGATGTACTTGCGCTTGTTGATGCTGATTCAGACGCTGAGGTACTTGCTGAGGCTGAGGCACTGGTTGAGGCTGATTCAGAAGCTGATGTG 1688401 19 100.0 101 NNNNNNNNNN ....CTGAA..C..C..AC TGGTACTTGCTGAAGCTGAAGCACTCGTTGATGCTGAAGCCGAGGCACTCGTTGATGCTGAGGATGACGCACTGGTACTTGCTGACTCTGATGCACTGGTA 1688521 19 100.0 77 NNNNNNNNNN ....CTGAA..C..C..AC TGGTGCTTGCTGAAGCCGATGCACTTGTTGATGCGGATTCAGAGGCACTGGTTGACGCTGAGACTGAAGCACTCGTT 1688617 19 100.0 77 NNNNNNNNNN GA..CTGAA..C..T..AC TGGTACTTGCTGAGGCTGACGCACTCGTTGATGCTGAAGCTGAGGCGCTAGTACTTGCTGAAGCTGAGGCGCTAGTA 1688713 19 100.0 95 NNNNNNNNNN ....CTGAA.....T..AC TAGTACTTGCTGAGGCTGACGCACTCGTTGATGCCGATTCAGACGCTGAGATACTTGCTGAGGCTGATGCACTGGTTGAGGCTGAGGCGCTAGTA 1688827 19 100.0 101 NNNNNNNNNN ....CTGAA..C..T..AC TCGTTGATGCTGAAGCTGATGCACTCGTTGATGCTGAAGCTGATGCACTAGTACTTGCTGAGGCTGACGCACTCGTTGATGCCGATTCAGACGCTGAGATA 1688947 19 100.0 83 NNNNNNNNNN ....CTGAG.....T..AC TCGTTGATGCTGAGGCTGAGGCGCTTGTACTTGCTGAAGTCGACGCACTGGTTGAGGCCGATTCAGATGCTGACGTACTTGCA 1689049 19 100.0 95 NNNNNNNNNN .....TGAC..C..T.TAC TTGCTGAGGTCGACGCGCTTGTTGATGCGGACGTACTTGCACTTGTTGATGCTGAGGCTGAGGCGCTAGTACTTGCTGAAGCCGACGCACTGGTG 1689163 19 100.0 77 NNNNNNNNNN ....CTGAA..C..T..AC TTGTTGATGCGGATTCAGAGGCACTGGTTGACGCTGAGACTGAAGCACTCGTTGATGCTGAAGCCGAGGCACTGGTA 1689259 19 100.0 53 NNNNNNNNNN ....CTGAG.....C..AC TCGTTGATGCTGAAGCTGAGGCGCTAGTACTTGCTGAAGCTGAGGCGCTAGTA 1689331 19 100.0 53 NNNNNNNNNN ....CTGAA..G..C..AC TCGTTGATGCGGAAGCCGAAGCACTTGTTGACGCTGAGGCTGAGGCGCTAGTA 1689403 19 100.0 29 NNNNNNNNNN ....CTGAA..G..C..AC TCGTTGATGCCGATTCAGACGCTGAGATA 1689451 19 100.0 47 NNNNNNNNNN ....CTGAG.....G..AC TGGTTGAGGCTGAGGCGCTAGTACTTGCTGAAGCTGAGGCACTAGTA 1689517 19 100.0 29 NNNNNNNNNN ....CTGAG.....C..AC TCGTTGATGCCGATTCAGACGCTGAGATA 1689565 19 100.0 47 NNNNNNNNNN ....CTGAG.....T..AC TGGTTGAGGCTGAGGCGCTAGTACTTGCTGAAGCCGATGCACTCGTT 1689631 19 100.0 29 NNNNNNNNNN GA..CTGAA.....T..AC TAGTACTTGCTGAGGCTGAGGCACTCGTT 1689679 19 100.0 35 NNNNNNNNNN GA..CTGAG.....G..GC TTGTACTTGCTGAAGTCGACGCACTGGTTGAGGCC 1689733 19 100.0 29 NNNNNNNNNN GA.TCAGA......C.TAC TTGCACTTGTTGACGCCGATGTGCTTGCA 1689781 19 100.0 53 NNNNNNNNNN .....CGA......C.TGC TTGCCGATGTACTTGCGCTTGTTGATGCCGATGTACTTGCTGACGTACTTGCG 1689853 19 100.0 53 NNNNNNNNNN .....TGA...G..C.TGC TTGCTGACGTACTTGCGCTTGTTGATGCGGACGTACTTGCTGAGGTCGACGCG 1689925 19 100.0 41 NNNNNNNNNN .....TGA...G..C.TAC TTGCACTTGTTGACGCCGATGTACTTGCTGAGGTCGACGCG 1689985 19 100.0 41 NNNNNNNNNN .....TGA...G..C.TAC TTGCACTTGTCGATGCTGACGTGCTTGCCGATGTACTTGCG 1690045 19 100.0 29 NNNNNNNNNN .....TGA......TT.A. ACGCTGAGGTACTTGCTGAGGCTGAGGCA 1690093 19 100.0 53 NNNNNNNNNN ..G..TGA......TT.A. AAGCTGATGTGCTTGCTGAAGCCGACGCACTGGTACTTGCTGAAGCTGAAGCA 1690165 19 100.0 53 NNNNNNNNNN ..C..TGA........... AGGCACTCGTTGATGCTGAGGCTGACGCACTGGTACTTGCTGACTCTGATGCA 1690237 19 100.0 29 NNNNNNNNNN ..G..A...........T. AGGCACTCGTTGATGCCGATTCAGATGCT 1690285 19 100.0 53 NNNNNNNNNN GAG..A............. AAGCACTGGTACTTGCTGAAGCCGAAGCACTCGTTGATGCCGATTCAGACGCT 1690357 19 100.0 53 NNNNNNNNNN GAG..A............. AAGCACTCGTTGATGCTGAAGCTGAAGCACTGGTACTTGCTGAGGATGACGCA 1690429 19 100.0 53 NNNNNNNNNN ..G..A...........T. AGGCGCTAGTACTTGCTAAAGCCGAGGCACTGGTGCTTGCTGAGGCTGACGCA 1690501 19 100.0 53 NNNNNNNNNN ..C..TGA...C.....T. ACGCACTCGTTGATGCTGAAGCCGAGGCACTGGTTGACGCTGAAGCTGAGGCG 1690573 19 100.0 35 NNNNNNNNNN .....TGA......G..T. AGGCACTAGTACTTGCTGAAGCCGAAGCACTTGTT 1690627 19 100.0 47 NNNNNNNNNN GAC.CTGA......G..GC TAGTACTTGCTGAGGCTGATGCGCTTGTGCTTGATGAAGCTGAGGCA 1690693 19 100.0 29 NNNNNNNNNN .....TGA......G..T. ACGCACTCGTTGATGCAGATTCAGACGCA 1690741 19 100.0 29 NNNNNNNNNN ..............G..T. ACGCACTCGTTGATGCGGAAGCTGAGGCG 1690789 19 100.0 29 NNNNNNNNNN ................... ACGCACTCGTTGATGCTGAAGCTGAAGCG 1690837 19 100.0 29 NNNNNNNNNN .....CGA......G..T. ACGCACTTGTCGACGCTGAAGCTGAAGCA 1690885 19 100.0 29 NNNNNNNNNN ..C..TGAC........T. ATGCACTCGTTGACGCTGAAGCTGACGCG 1690933 19 100.0 29 NNNNNNNNNN ..G..TGAG.....G.TT. AGGCGCTAGTACTTGCTGACTCTGATGCA 1690981 19 100.0 53 NNNNNNNNNN ..G..A........G..T. ACGCACTTGTGCTTGCTGAAGTGGACGCACTCGTTGATGCGGAAGCTGAAGCA 1691053 19 100.0 29 NNNNNNNNNN ..G..A........CT.T. ATGCACTGGTACTTGCTGAGGCTGACGCA 1691101 19 100.0 29 NNNNNNNNNN ................... ACACACTCGTTGATGCGGAAGCTGAAGCA 1691149 19 100.0 29 NNNNNNNNNN ..G..A........G..T. AGGCACTCGTTGATGCTGAAGCTGATGCA 1691197 19 100.0 29 NNNNNNNNNN ..A..A........GA.T. AAGCACTTGTGCTTGCTGAAGCTGAGGCG 1691245 19 100.0 53 NNNNNNNNNN ................... ACGCACTGGTTGATGCTGAAGCTGACGCACTTGTTGATGCTGAGGCTGAGGCG 1691317 19 100.0 53 NNNNNNNNNN ..............GA.T. AAGCACTCGTTGACGCTGAGGCCGAAGCACTGGTTGAGGCCGATTCAGATGCT 1691389 19 100.0 47 NNNNNNNNNN GA...............T. AGGCGCTAGTACTTGCTGAAGCGGACGCACTCGTTGATGCGGAAGCC 1691455 19 100.0 77 NNNNNNNNNN GAA.CA....T...C..T. AGGCTGAGGCGCTAGTACTTGCTGAAGCCGACGCACTGGTGCTTGCTGAGGCTGATGCACTGGTTGAGGCGGATTCA 1691551 19 100.0 77 NNNNNNNNNN GAG.CA..G.T...C..T. AGACTGAAGCACTTGTTGATGCTGAGGCTGAGGCGCTAGTACTTGCTGAGGCTGACGCACTTGTACTTGCTGAAGCC 1691647 19 100.0 77 NNNNNNNNNN GAA.C.....TC..T..T. AGGCTGAAGCACTGGTTGATGCCGATTCAGAGGCACTTGTCGACGCTGAAGCCGACGCACTCGTTGATGCTGAAGCT 1691743 19 100.0 101 NNNNNNNNNN GAA.C.....TC..T..T. ACTCAGACGCACTCGTTGACGCTGAAGCTGAGGCACTTGTCGATGCTGAGGCTGAGGCACTGGTTGACGCTGAAGCTGAGGCGCTGGTACTTGCTGAAGCT 1691863 19 100.0 77 NNNNNNNNNN GAC.CA....T...T..T. AAGCCGACGCACTCGTTGATGCTGAGGCCGAGGCGCTGGTTGACGCTGAAGCTGATGCACTTGTGCTTGCTGAGGCT 1691959 19 100.0 71 NNNNNNNNNN GA..CA....TGCTT..T. ATGTACTTGCGCTGGTTGACGCTGAAGCCGACGCACTTGTCGACGCTGAGACTGACGCACTGGTTGATGCT 1692049 19 100.0 65 NNNNNNNNNN GA...A.....GCTG.TT. ACGCTGAAGCTGATGCACTCGTTGATGCTGACTCAGACGCACTGGTTGACGCTGATTCAGATGCT 1692133 19 100.0 53 NNNNNNNNNN GAG...........G..T. ACGCACTGGTTGATGCCGATTCAGAGGCACTTGTCGACGCTGAAGCCGAAGCA 1692205 19 100.0 77 NNNNNNNNNN ..G..TGA......G..T. ACGCACTTGTACTTGCTGAAGCTGAGGCGCTTGTGCTTGCTGAAGCTGAAGCGCTTGTCGATGCTGACTCAGACGCA 1692301 19 100.0 77 NNNNNNNNNN ..C..TGAC.......... ACGCACTCGTTGATGCGGAAGCTGACGCACTGGTACTTGCTGAGGCTGAGGCACTGGTACTTGCTGAGGCTGACGCG 1692397 19 100.0 77 NNNNNNNNNN .....TGA...A..TT.A. AGGCGCTTGTCGATGCTGAGGCTGAAGCACTCGTTGATGCCGATTCAGACGCTGAGATACTTGCTGAGGCTGAGGCA 1692493 19 100.0 1 NNNNNNNNNN ..C..TGA...C..TT.A. NNNNNNNNNN ========== ====== ====== ====== ========== =================== 60 19 57 CTTGTGCTTGCTGAAGCCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [142-113] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [354,2177] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_012470 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1604884 32 100.0 35 NNNNNNNNNN ...................T.TG......... GAAAGGAGTCACAAATGATTAGTTCGCAGTGTCGG 1604951 32 100.0 35 NNNNNNNNNN ................................ ATGCTAGACATGAGTCTGATGTGAGGCATGCCAAA 1605018 32 100.0 35 NNNNNNNNNN ................................ CTAACTCCTCCTTACGCTTTGTAGCAGCTTCATCA 1605085 32 100.0 34 NNNNNNNNNN ...................T.TG......... GAGACCACCATTGATTGAATGTATTTGATCTTTT 1605151 32 100.0 37 NNNNNNNNNN ...................T.TG......... CCCCATCCTCGAAGTAATTCTCCACCTGTTTCATCAA 1605220 32 100.0 35 NNNNNNNNNN ...................T.TG......... ATCCCTACAACGCAAGCCGTTTTTCCACCGTCTCC 1605287 32 100.0 34 NNNNNNNNNN ...................T.TG......... CTGGGGACTTGGATAAAGGTATCCATATCAAGTC 1605353 32 100.0 34 NNNNNNNNNN ...................T.TG......... CGATAATACTAGATTGCTCATTCAAGTACCCCAC 1605419 32 100.0 33 NNNNNNNNNN ...................T.TG......... GCTCTGTTTGAGTTTGGTGGTAATGGATTATCG 1605484 32 100.0 35 NNNNNNNNNN ................................ ATATAAAGCGTTGGGGTTTGTACCCTACCAACAGA 1605551 32 100.0 34 NNNNNNNNNN ................................ TATCTTTAAAAGTAGTTGGAACGACAGGGCTAAA 1605617 32 100.0 33 NNNNNNNNNN ................................ AAAGCAGCTAAACTCGCTTTTCAAACGGAACAC 1605682 32 100.0 34 NNNNNNNNNN ................................ ATGTTGGTTGGACTGTTCGTCAATGTTTGATTTG 1605748 32 100.0 36 NNNNNNNNNN ................................ TGCTCCAAGTAAACCAACTAAGAGAATCGAGAAGAG 1605816 32 100.0 33 NNNNNNNNNN ................................ CAATATCAATCTTGTAATTTGCAAAAAATAGCT 1605881 32 100.0 33 NNNNNNNNNN ................................ GATATCTTGCAATAGAGCAAGCACCTTAACAAA 1605946 32 100.0 33 NNNNNNNNNN ................................ AAAGACGATGCTTATATCGCAGATTACATCAAA 1606011 32 100.0 33 NNNNNNNNNN ................................ ATATGATTGACGGTCAAAAAACGATTGGTTATG 1606076 32 100.0 1 NNNNNNNNNN ................................ NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 19 32 34 ATTTCAATCCACTCGCCCGCAAAGGGCGAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [9,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.10,-6.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [796,149] Score: 0.18/0.18 # # Final direction: R [0.92,5.18 Confidence: HIGH] >NC_012471 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================================================ ====== 354737 60 100.0 51 TTTTAGTGTC ............................................................ TTCGATGGTTTGTCCCTGCCCACCAATCATGACCTCAGGTTTTTTAGTGTC 354848 60 100.0 51 TTTTAGTGTC ............................................................ TTCGATGGTTTGTCCCTGCCCACCAATCATGACCTCAGGCTTTTTGGTGTT 354959 60 98.3 TTTTGGTGTT ...............G............................................ CTC ========== ====== ====== ====== ========== ============================================================ 3 60 51 TTCTGACTCGATAGTACCGCCAGATTGCCCAGACATGCCTTTTTGTGTGTCCTCTGTTGT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:51.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.20,-3.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [787,1446] Score: 0/0.18 # # Final direction: F [0.78,0 Confidence: HIGH] >NC_012483 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 894165 32 93.8 37 CCTGCAGAGG .....G.........T................ GGCGGCTGGCAGCGATGGCCGAGTTATTGTTGTTCGT 894234 32 100.0 35 TGTTGTTCGT ................................ GGTTTCGATGCCCTATTTGCTGCGATGGGGAGATG 894301 32 100.0 35 TGGGGAGATG ................................ CGTGCCACTGAGATCGAGAGAGCCTTCCACGCTCA 894368 32 100.0 35 TCCACGCTCA ................................ GTGTCAGTGTAGCCGCTGCCGCCGTTGGTGATCGA 894435 32 100.0 34 TGGTGATCGA ................................ AAAATGCGGCTGAACGTTCTCGAGGCCAACAGCG 894501 32 100.0 34 GCCAACAGCG ................................ GTTGGTCGCTGCTCCGGTTGGCGATGAAGTGTTG 894567 32 100.0 34 TGAAGTGTTG ................................ ATGGATGTAGATGTCCGAAGCATTCGCACAAGTG 894633 32 100.0 34 CGCACAAGTG ................................ GGGTGTCAGCGGCGAAGTTGAGACCATCGGCCGT 894699 32 100.0 33 CATCGGCCGT ................................ GGCGGTTTGGCCGATCTGCGCATTGGCCGGCAA 894764 32 100.0 35 TGGCCGGCAA ................................ GAAACAGTCGGGTTCGAAGTGCATGCGCCATTCGT 894831 32 100.0 33 CGCCATTCGT ................................ CGTGATGGATCAAAGTCCCCACGCGCTACGCGA 894896 32 100.0 34 CGCTACGCGA ................................ TGCGCTGAACTGCTGAGTCCCGGACGCCAAGATC 894962 32 100.0 34 CGCCAAGATC ................................ CAACCCTGTAAGGATGTTTAACGTCATCGAAATA 895028 32 100.0 35 CATCGAAATA ................................ GGTATTCGACGAGGGCAGAAGCCTGGCTCACTCCG 895095 32 100.0 35 GCTCACTCCG ................................ GACAAGCTGCTGGTGGTACTGTGAGGGGTTTCATC 895162 32 100.0 33 GGGTTTCATC ................................ CAGATAAAATCGTCGTCGCCCCGAGGCACACGC 895227 32 100.0 33 AGGCACACGC ................................ TGTGGTCCAGCTGTTGCCGGAGCCGTCCTGGAA 895292 32 100.0 35 CGTCCTGGAA ................................ GTTGCCGGTGTGGCTGAATTTGATTGGTTCAGGAG 895359 32 100.0 35 GGTTCAGGAG ................................ GTTCGGGTCCTCCACAACCTTGATGCCATCGGCCA 895426 32 100.0 35 CCATCGGCCA ................................ GTGTGTTGATCGGCTGGCTGCCTTCCCCGGCGGTT 895493 32 100.0 35 CCCGGCGGTT ................................ GTGTGTTGATCGGCTGGCTGCCTTCCCCGGCGGTT 895560 32 100.0 35 CCCGGCGGTT ................................ GTGTGTTGATCGGCTGGCTGCCTTCCCCGGCGGTT 895627 32 100.0 33 CCCGGCGGTT ................................ TGTGGCTACCAGGCTCACAGCCGTGTGGCGGTT 895692 32 100.0 TGTGGCGGTT ................................ GGCTCCTGTG ========== ====== ====== ====== ========== ================================ 24 32 34 GTTTCAATCCACGCGCCCGCGAGGGGCGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.20,-6.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [289,162] Score: 0/0.18 # # Final direction: R [0.74,5.18 Confidence: HIGH] >NC_012488 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 2103931 25 100.0 53 NNNNNNNNNN ..............GG......A.. CCAGCTCTTCAAGGCTAGTACATTTTTCAAACATGGACTGCATAGTAGTTACT 2104009 25 100.0 53 NNNNNNNNNN ......................... CTAACTCTTCAAGTGAGCTGCACTCAAAAAACATGGACTGCATAGTAGTTACT 2104087 25 100.0 53 NNNNNNNNNN .....A................... CTAACTCTTCAAGGCTATTACAAGCAACAAACATGGCCAACATAGTAGTAACG 2104165 25 100.0 53 NNNNNNNNNN .................G....... CCAATTTCTCAAGTGCTCTACAGGAACTAAACAAGGCTGACATATTAGTAACG 2104243 25 100.0 53 NNNNNNNNNN ......................... CTAATTCTTTAAGACTGGTACTATTAACAAACATGCCTCCCATATTAGTAACG 2104321 25 100.0 53 NNNNNNNNNN ......................... CCAATTTTTCAAGTGCTTTACAATCCCTAAACATATGATACATATCATTCACA 2104399 25 100.0 53 NNNNNNNNNN ......................... TCAATTTCTCAAGTGATTCACAGTATCCAAACATGCTATTCATACTATTAACG 2104477 25 100.0 1 NNNNNNNNNN ...........C..G..G....A.. NNNNNNNNNN ========== ====== ====== ====== ========== ========================= 8 25 53 GAACTCGTATCAAAATTACTTACAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [978,1006] Score: 0/0.18 # # Final direction: NA [0,0 Confidence: NA] >NC_012490 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================= ====== 2606281 33 100.0 24 NNNNNNNNNN ..A.............................. AAGACGGTTGCCGCGAAGGCTCCC 2606338 33 100.0 24 NNNNNNNNNN ................................. AAGACGGTTGCCACCAAGGCTCCC 2606395 33 100.0 24 NNNNNNNNNN ................................. AAGACGGTTGCCACCAAGGCTCCC 2606452 33 100.0 21 NNNNNNNNNN ................................. GCTCCGGCCAAGAAGGCTCCG 2606506 33 100.0 1 NNNNNNNNNN ................................. NNNNNNNNNN ========== ====== ====== ====== ========== ================================= 5 33 23 GCCAAGAAGGCTCCGGCCAAGACCGCAGCCAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [10,1] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [36.7-38.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [546,209] Score: 0.18/0.18 # # Final direction: R [0.55,0.78 Confidence: LOW] >NC_012529 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 3255 19 100.0 68 NNNNNNNNNN ................... CCTGACGGGTTAAATCGCCTGAGTTGTCCGGTAGTTTCGCCTGAGTTGTCCGGTAGTTGAACACTCGA 3342 19 100.0 48 NNNNNNNNNN ................... ATAGAAGAGCCATGTTCGCCTGAGTTGTCCGGTATTAATTTCCTGGAT 3409 19 100.0 37 NNNNNNNNNN ................... TGTATAGAAAGGGATTCGCCTGAGTTGTCCGGTATTA 3465 19 100.0 24 NNNNNNNNNN ................... TAGGACGCACTTGGAAGAACCAAA 3508 19 100.0 1 NNNNNNNNNN ................A.G NNNNNNNNNN ========== ====== ====== ====== ========== =================== 5 19 44 TCGCCTGAGTTGTCCGGTA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1259,260] Score: 0.18/0.18 # # Final direction: F [0.86,0.37 Confidence: MEDIUM] >NC_012490 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 3337843 24 100.0 69 NNNNNNNNNN .....................A.. GGTCGAGGGGCGGCTGTCGCGATCGCCGTACGAGCGGTTGTTGTCGCGGTTGCCCTGGTATCCACCACC 3337936 24 100.0 39 NNNNNNNNNN ...C..A................. GCCGCGGCTCTCGCCGTCACGGCTTCCCTGGTATCCGCC 3337999 24 100.0 39 NNNNNNNNNN C....................A.. CGTCGACGGGCGGCTGTCGCGGTCTCCGTAGGCCGGACG 3338062 24 100.0 30 NNNNNNNNNN .CTGTCA..............A.. ACCGCTGGAGCGATCACCCTGGTATCCACC 3338116 24 100.0 39 NNNNNNNNNN .....................A.. GCCGCGGCTCTCGCCGTCGCGGCTTCCCTGGTAGCCACT 3338179 24 100.0 39 NNNNNNNNNN ........................ GGTCGAGGGGCGGCTGTCGCGGTTGCCCTGGTATCCGCC 3338242 24 100.0 39 NNNNNNNNNN .CTG.......CA........... GCCGCGGCTCTCGCCGTCACGGTTGCCCTGGTAGCCACC 3338305 24 100.0 1 NNNNNNNNNN ........................ NNNNNNNNNN ========== ====== ====== ====== ========== ======================== 8 24 42 GGAAGAGCGGTTGCCCTGGTATCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.80,-1.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [5-6] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [26.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [348,1616] Score: 0.18/0.18 # # Final direction: R [0,1.19 Confidence: HIGH] >NC_012560 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 3261022 32 100.0 36 NNNNNNNNNN ................................ CGTGAATGACTCCGGTGTTGCCGGCGTACTGCGCGG 3261090 32 100.0 34 NNNNNNNNNN ................................ TGACGTGCTCGGCATTCTTTGATGGCGGGAAGAT 3261156 32 100.0 36 NNNNNNNNNN ................................ ATCGGTATGGCTGTGAGTGGCTTGGCGCATCAGGCC 3261224 32 100.0 34 NNNNNNNNNN ................................ ACTGGCGGGCCATCGGCCAGGCACTGCTCCAGCA 3261290 32 100.0 36 NNNNNNNNNN ................................ ATGGGCAGGGCCGGCATCAGGCGCCGGTCAGGTGGT 3261358 32 100.0 34 NNNNNNNNNN ................................ AGGCGTATATCGCCGCCGGCGGCGACGTGTTCAT 3261424 32 100.0 35 NNNNNNNNNN ................................ GGACGCGGCGCTGCAGACGAGCCTCGCCCAGGCGA 3261491 32 100.0 34 NNNNNNNNNN ................................ GCCTCGCGAGCGTGCGGGCCAGCTCGTCAGGCGT 3261557 32 100.0 35 NNNNNNNNNN ................................ CTGGCTTCCTCGCGAGCGTAGTGCTCGGTCATGCC 3261624 32 100.0 34 NNNNNNNNNN ................................ CGCTGATGGCCCTGAATCCTCCGGCGGCGACAAA 3261690 32 100.0 36 NNNNNNNNNN ................................ AGCCACAACTGCGCGTACTCTCCGAATGCTGGAACT 3261758 32 100.0 35 NNNNNNNNNN ................................ GTATCAGCCACAGCGGTGTTGCCGCACAACTGGTT 3261825 32 100.0 34 NNNNNNNNNN ................................ GGCCTTGACGCCAGCCTTCCCTTGCTGGATCTGC 3261891 32 100.0 37 NNNNNNNNNN ................................ GAGCGTGAGAGTCCATGCACGAGATTTCGTCATCGCT 3261960 32 100.0 36 NNNNNNNNNN ................................ GCGAATTTCGACGTAGGCTTGGGCCGCCCACGCATG 3262028 32 100.0 34 NNNNNNNNNN ................................ TCGGCAACGAAGCCATCACCGGCAACTATGTGTT 3262094 32 100.0 35 NNNNNNNNNN ................................ CCGCGAGGCCTGATCGCCATGGCCATCGTCGGCAT 3262161 32 100.0 35 NNNNNNNNNN ................................ TGGCACCACTTGATGAACTTGCCCACGCTCGGGGC 3262228 32 100.0 34 NNNNNNNNNN ................................ TGTAGCGGGTTTTCTCGCTCGCCGAGGCGTAGGT 3262294 32 100.0 34 NNNNNNNNNN ................................ GCAAGCGACGCTCGGCGACCTTCTTCACCGTGAC 3262360 32 100.0 36 NNNNNNNNNN ................................ TACCGACGCGGCTTTCTCCGCGTTTGAGGCCTGGAC 3262428 32 100.0 34 NNNNNNNNNN ................................ AGGCTGATCGGCTTCCAGTCGAGGCCCATCTCCA 3262494 32 100.0 36 NNNNNNNNNN ................................ CAGCAGATGACCACCTACCTGGAGGAGTTCGCCGAC 3262562 32 100.0 34 NNNNNNNNNN ................................ TCGCGACTGGGATGCAACCAGTACGGGCTATGCC 3262628 32 100.0 35 NNNNNNNNNN ................................ GATTTCATATCCCCAGGCCGGCCTTGCTACAGCGA 3262695 32 100.0 34 NNNNNNNNNN ................................ CTGCTCTGGGGCGGTGATCCCGACGAAACGAGAG 3262761 32 100.0 36 NNNNNNNNNN ................................ GCGCGTGCACATGCGGTGATGCGTGCGCGTACCGGC 3262829 32 100.0 34 NNNNNNNNNN ................................ CCGGCATTGCCTTCCTGACCCTGCGCGACAACAC 3262895 32 100.0 33 NNNNNNNNNN ................................ CAGACTGGCCGAGCTGGCGGTTACGTTTAGCCA 3262960 32 100.0 34 NNNNNNNNNN ................................ ATTAGAAATGCCAGCCCAGCAGCTCCAAATATAT 3263026 32 100.0 1 NNNNNNNNNN ........................T.TCAACG NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 31 32 34 GTTTCAATCCACACGCCCGCATGGGGCGTGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [6,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.20,-6.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [40.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [230,62] Score: 0.18/0.18 # # Final direction: R [0.96,4.77 Confidence: HIGH] >NC_012560 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 3265050 32 100.0 36 TGCGCGGCAT ................................ CAGAGCGTGGCCCGCATGGCCGAGTTGCGCCTGGCG 3265118 32 100.0 35 GCGCCTGGCG ................................ TTGTATTTGCGCGCCCGGCGGTTGGACAGGGCAGT 3265185 32 100.0 35 ACAGGGCAGT ................................ CAGGGTGGGCAGAGCGAGGGGATAGACCCGCTGCC 3265252 32 100.0 35 ACCCGCTGCC ................................ GTGCAGACCTATGCCGGAGCTAGCCTGGCCTTCCT 3265319 32 100.0 36 TGGCCTTCCT ................................ CTACGCTTGGCCGATGCGGCTCAGTCCCTGAGCAAA 3265387 32 100.0 35 CCTGAGCAAA ................................ CGGAGTTCTCAAGCGGAGTGGATCGCTGATGGCCC 3265454 32 100.0 34 CTGATGGCCC ................................ TGACTGCGTACGTCGATGACGGTGCGCTGATCGT 3265520 32 100.0 36 CGCTGATCGT ................................ ATAGCCCCACCCAGAGCGCTTGATCTCGATGGCGGC 3265588 32 100.0 35 CGATGGCGGC ................................ TCGGAGGGCGCTTCCGCCTCTTGCGGGGCTTCGTT 3265655 32 100.0 34 GGGCTTCGTT ................................ GCTCCACCCATAGGGTCCCTGAAAGCCATGGGAA 3265721 32 100.0 34 GCCATGGGAA ................................ CTGCCGGTGCGAAGCGTGCACAGCGGCATACAGG 3265787 32 100.0 35 GGCATACAGG ................................ AATTCGCATCATGCCGGAACGCGCAGAGACGTGAA 3265854 32 100.0 36 GAGACGTGAA ................................ GTTGCTTTAATTGTTGATCCAAACGTATCCCTTGTT 3265922 32 100.0 35 ATCCCTTGTT ................................ CCGCCAGTGATTCGGCTTGCGAGACGAAATGAGAT 3265989 32 100.0 35 GAAATGAGAT ................................ TCCTGCTGGTCGCGAGCAGGGATCGCCCAGTCGCT 3266056 32 100.0 34 CCCAGTCGCT ................................ TGTCCGGCGAGGGCAGGGCGTTCTGTACGCCGAG 3266122 32 100.0 34 GTACGCCGAG ................................ GCTTACGCAGCGTTCCCGGCCCCGGGATGGTGTT 3266188 32 100.0 35 GGATGGTGTT ................................ ACGAACGTGACCAGCACTTCGACGCTCAATATCGT 3266255 32 100.0 34 TCAATATCGT ................................ CGTCCCTGGGGCGCATCCCGCTGACCGCGATCAA 3266321 32 100.0 CCGCGATCAA ................................ CCCGTATGTAT ========== ====== ====== ====== ========== ================================ 20 32 34 GTTTCAATCCACACGCCCGCATGGGGCGTGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [6,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.20,-6.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [132,181] Score: 0/0.18 # # Final direction: R [0.37,4.77 Confidence: HIGH] >NC_012563 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1179524 28 100.0 39 NNNNNNNNNN ............................ CAAGGGTATTTAAAAGCAATATAGAAGTAATATTATAGA 1179591 28 100.0 36 NNNNNNNNNN ............................ ATATGATTTCTTAGTAGATATGCAAACGGGAGATGC 1179655 28 100.0 36 NNNNNNNNNN ............................ TAATCAAGATTTAACCATTCTTTAGCTTCTCGTAGT 1179719 28 100.0 36 NNNNNNNNNN .............AG............. TTGGAAAGCTTACTAGATTTCTTACCTATATCGGGT 1179783 28 100.0 37 NNNNNNNNNN ......A............C........ AAGTTAATTCTTTTGAATTTAATATCATCTGTTACAC 1179848 28 100.0 1 NNNNNNNNNN ......A......A.........ATT.A NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 6 28 36 TGAACATTAACATGAGATGTATTTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:78.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [290,4] Score: 0.18/0.18 # # Final direction: F [0.59,0 Confidence: HIGH] >NC_012588 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 854586 24 100.0 40 TAAACCCTCA ........................ ACACAATCGGCATCTACGCAAAATAACGTACTGGGGACAT 854650 24 100.0 37 CTGGGGACAT ........................ GCACCAGGGTGTTGTGCTCGTCCAGTGCGATCCATGC 854711 24 100.0 38 CGATCCATGC ........................ TCGCCATCGTGGAAAGCGACGCCAACGGATACTATACC 854773 24 100.0 41 ATACTATACC ........................ ATTATACTTTCCTTATTGACGCTTTCCAGTGTAACATCTCT 854838 24 100.0 37 TAACATCTCT ........................ TATGTAACAAGAATATCAGACCTCCTAGGGATTCCGA 854899 24 100.0 39 GGGATTCCGA ........................ TTTTTTCACCAATATTGTTATTGTTGAACAAATATTTAA 854962 24 100.0 38 AAATATTTAA ........................ TATATTACCGTCATTCGCTCTTCTTATCCTCAGACCGT 855024 24 100.0 42 CTCAGACCGT ........................ AGTAAGATGGCAACATAAAACTTTCCTTTGTCATTGAGTTTG 855090 24 100.0 39 ATTGAGTTTG ........................ CCTAAGATTGCTAATGCGAGCAATAATGCTAATGGGCTT 855153 24 100.0 38 TAATGGGCTT ........................ CAAAATGGACAAATAGCATTAGGTTGATGAAAATTACT 855215 24 100.0 39 GAAAATTACT ........................ TTACCACCATTTATTTTGCGATATTTGATGGAAACTGGT 855278 24 100.0 40 GGAAACTGGT ........................ TGCAACCGCCCTTAGTTTTTCCCTAACCAGTTAGACAGAA 855342 24 100.0 40 TTAGACAGAA ........................ GGGGAACGTACGGACAACATAGCAAAATATTCTACATCGT 855406 24 100.0 41 TCTACATCGT ........................ TCGCCTATCTGCGTTTCGACTACCACTCCGGCATATATCCC 855471 24 100.0 38 CATATATCCC ........................ ATAAAGACGCCAACTGGTACCATAGTAAAGAGATACCA 855533 24 100.0 39 AGAGATACCA ........................ AAACCGAAGCCGGCTGCACCCATGCCAAGTGCAAAAACT 855596 24 100.0 38 TGCAAAAACT ........................ TTCCACCCGTTGCTAGGGTTCCATTGAACGCTTGCCAA 855658 24 100.0 38 CGCTTGCCAA ........................ TTAGATAAAGATATAACGTTGATCCGCTTCCAGTGATT 855720 24 100.0 37 TCCAGTGATT ........................ AAGCCCAGCTCCTATGTTCAGGGTTGCGCTATCATGG 855781 24 100.0 39 GCTATCATGG ........................ ATAATACTCAAAATGTTTATACAACACATGTGATGCGAT 855844 24 100.0 39 GTGATGCGAT ........................ TTACTAGGGGATAATAAACCAGATTTTGCTAATATTTCT 855907 24 100.0 40 TAATATTTCT ........................ GGTCATACCGCCTTTGCCGGAGCTTATTATTCATATGCCG 855971 24 100.0 41 TCATATGCCG ........................ CTTACTGCAGATACATAGGGCTTCCTTATCCTATCTTAACA 856036 24 100.0 39 TATCTTAACA ........................ TTAGGAAAAGAAGAAATGTATCATGTCGGCACTGATGAA 856099 24 100.0 42 CACTGATGAA ........................ TTCGAAATAATATATTGTGTAAGCAATGCTAGATACTGTGAA 856165 24 100.0 40 ATACTGTGAA ........................ TTAAAAAAGCTATAAAAAACAATCTACAAGTATTACAACC 856229 24 100.0 40 TATTACAACC ........................ TTTCGAAGTTTGTAAAATTAATCTTTTTACAAATAACCAG 856293 24 100.0 39 AAATAACCAG ........................ GGTATTCCCATGTTTCTCACTCTGAAGTTGAAATTCCCT 856356 24 100.0 44 GAAATTCCCT ........................ AACGCAAAATAGCCTGGACCCCCCGTTAAAACTCCTCCGCTTAT 856424 24 100.0 39 CTCCGCTTAT ........................ TTGTACTTAATTGCTGTATAGGGTATATCTTGCCACTTG 856487 24 100.0 39 TTGCCACTTG ........................ GTAATCATGCCAACGGGCAATAATTCTATGTAACGTAAA 856550 24 100.0 37 GTAACGTAAA ........................ TATAAAATTTTTGCTAAAATTTTATTTGAAAGATGAA 856611 24 100.0 45 GAAAGATGAA ........................ GTACATTTTGCAATTGATAGGGGGAATAAGCAAACGGAAGCTTTC 856680 24 100.0 40 GGAAGCTTTC ........................ TTAAACCATCAAGATATAATTTGACTTTCTTTTTATTCCA 856744 24 100.0 41 TTTTATTCCA ........................ TATAGAGAAAATAACTTAACAACCATATGTAAAAAAATGAG 856809 24 100.0 39 AAAAAATGAG ........................ AAATTAATCCCACCTTCTCTTCCTAGAGCTATAGGATCT 856872 24 100.0 39 TATAGGATCT ........................ AACGTGAGCCGTTTAGTACCAGCACTTTAAGAATTATGT 856935 24 100.0 37 AGAATTATGT ........................ ATCTTCCCCCTATAAACCCCCCAATTCCTAATCCATC 856996 24 100.0 38 CTAATCCATC ........................ GATGTAATTGATAGGGACATACTAGGTAATAGCACCGA 857058 24 100.0 38 ATAGCACCGA ........................ CAGTTGATGGGGAGAAGAAAGAAGATCTTCTTTTTTTA 857120 24 100.0 40 TCTTTTTTTA ........................ CTACTTTAAATGTTACAACTCTGTTCATAAGTATTACTCG 857184 24 100.0 39 GTATTACTCG ........................ TATCTATCCAATATGTCGTACCAACACTAAGACCACTAA 857247 24 100.0 37 AGACCACTAA ........................ TGAAATAAGCGAGGAAGAAGTTGAACGACTAGTACCG 857308 24 100.0 39 ACTAGTACCG ........................ ATTGGCACTGAGGGCTATTTTGGATGAAGAATTCAATAT 857371 24 100.0 37 AATTCAATAT ........................ TATATTGCCAAAAATCACCTACAATATCACCCTCCTT 857432 24 100.0 38 CACCCTCCTT ........................ AATGAAACCAGTTCGTAATGATGTAGCACTTTCTACGA 857494 24 100.0 35 CTTTCTACGA ........................ TTGTATTTATGTCCTCCCCACTCATATAGTATATA 857553 24 100.0 37 ATAGTATATA ........................ CTCCTTGCTTGCTCCTCCTTTTTACCCTATTCACCCC 857614 24 100.0 40 TATTCACCCC ........................ ATTATTTTGAAATATACTAAGAACGTCCCGCTACCACTAG 857678 24 100.0 39 CTACCACTAG ........................ ATTTTTGCGTATAATTACAATAGAAATTAGTCTACCTAA 857741 24 100.0 45 GTCTACCTAA ........................ TAATGGAAGTTGGCAAATAGATATTCCTGTGTTACTTGTGTTATT 857810 24 100.0 40 TTGTGTTATT ........................ TCTAATCCTACTCTACAAATATGCTGCTGAAGAAGAGTTG 857874 24 100.0 39 AGAAGAGTTG ........................ TCAACATTTACACTTCTAGCATCTACTATGATGCTATCT 857937 24 100.0 38 GATGCTATCT ........................ ATATAATCGATTTTTGTCTCATTGTTGTTTACAGTTAT 857999 24 100.0 42 TTACAGTTAT ........................ AATAGAATGTATAATGCTAAAGCTAAGAGAGCTAAATATCTA 858065 24 100.0 38 TAAATATCTA ........................ ATATACGGAGATTGGATAGATGATTGTTGTGTCAAGTA 858127 24 100.0 38 GTGTCAAGTA ........................ GCTATACCGGCGCCATAAGGAGAGCTTGGACTGGATGG 858189 24 100.0 40 GACTGGATGG ........................ GCAGCTCCTCCAATTGCTAAAATTTTGCCCGGTGTTGTGC 858253 24 100.0 40 GGTGTTGTGC ........................ CTAACTTTGCCAACTTGTTCTTTAACTCTTCATTTTCCCT 858317 24 100.0 35 CATTTTCCCT ........................ GCGGTTGTGGCGTATAAAACATACAAGTCTGACTG 858376 24 100.0 38 AGTCTGACTG ........................ TATCCTTACATGATCCCTCGTAAAGTAACGTTAGCAAA 858438 24 100.0 41 CGTTAGCAAA ........................ TCTGCGTTAATTGAAGGACTATTAACCGTTTGGCCTTACAT 858503 24 100.0 41 GGCCTTACAT ........................ TTAGTGCTTACAAAATCACTAGCAATGGGAGAGATACCATA 858568 24 100.0 40 AGATACCATA ........................ ATATTTACTCCCTTTATGAAACCACTTAAATACGCTATCT 858632 24 100.0 40 TACGCTATCT ........................ TCAAAATATTCAAGTGGTTCTGATTTGTATGCTTTTATAC 858696 24 100.0 41 GCTTTTATAC ........................ GAAAATTTTTAAACCCCCAATTCGTTCTTTAGCTTATGAGT 858761 24 100.0 41 GCTTATGAGT ........................ GAAAATATACGACAATTGCTAACAAATAATAAAGATGACTT 858826 24 100.0 38 AAGATGACTT ........................ TATCTAACAGTAATGGGAAGCATATCCTCTTATTCCTA 858888 24 100.0 38 CTTATTCCTA ........................ ACTAAAGTGCTATAGTGACCTAAGTGAAGATGAGAAAG 858950 24 100.0 38 GATGAGAAAG ........................ GATACAATTGCGTTAGCTAACGCTTCTAAACCGCTAGT 859012 24 100.0 38 AACCGCTAGT ........................ TACCCTGCATCATTCTCACCACTTCCTTAAGAAGGACC 859074 24 100.0 39 AAGAAGGACC ........................ CATTATATACAATCTTTAAAAGCAATTGTATGAATAAAA 859137 24 100.0 38 ATGAATAAAA ........................ AAATATCCTGGTTGCCATTACGTACCACCTCCACCAGA 859199 24 100.0 38 CTCCACCAGA ........................ ACTGCTTGCTGATCAATAGCAAAGAAACCCTCTGGTTT 859261 24 100.0 42 CCTCTGGTTT ........................ AATATGCCATGAGCAAAGGTAGTATAATATTTCTACTTTCGT 859327 24 100.0 37 CTACTTTCGT ........................ TTAGTATTATTGTACGATCGCGAAAGGACAAGAGAAA 859388 24 100.0 40 ACAAGAGAAA ........................ AGATTATCTATATTAACGTCAAATCTGTTTAAGTTTTCTT 859452 24 100.0 38 AAGTTTTCTT ........................ CTTAGGTCTTTTTCAAGTTCTGGTTGAAACCGAAATCG 859514 24 100.0 39 ACCGAAATCG ........................ TGTAATTCACCTCTAAATATGAAAGTTTTACATTCCTTG 859577 24 100.0 38 ACATTCCTTG ........................ ATATTTTTACTTCAAACATGAAGACCCATTATTACAAC 859639 24 100.0 40 TTATTACAAC ........................ ATAACCTTTATTGGAAATGGCACTAGCTCTCTTTTCTTTA 859703 24 100.0 40 CTTTTCTTTA ........................ TTTATATAATGCGTCGTCTAAAGTCTCATCTATACTAGCT 859767 24 100.0 41 TATACTAGCT ........................ ATGTAAGAGGTAGGCCCTCATCCGTAAGTCGGGCCGTGGGG 859832 24 100.0 40 GGCCGTGGGG ........................ CTTTCCCGTCTCTAAGGTAACGATATTCCGGGACAATGTA 859896 24 100.0 39 GGACAATGTA ........................ TCTTCAGAGTGTTGGGGGCCGATAATATGGAGTTATCTA 859959 24 100.0 39 GAGTTATCTA ........................ CAGATTTCTTCTTCGTTCTCAGAAATTTTGTACTCTTGT 860022 24 100.0 39 GTACTCTTGT ........................ AACTATGCTACCGATATGTCAATAGGTCCTGTGTTTCAA 860085 24 100.0 42 TGTGTTTCAA ........................ ATTTTATAATAGTTGTATATTATTGACTTTACTTGGTTTTGG 860151 24 100.0 39 TTGGTTTTGG ........................ ATTTAGAATACTTGCGAAATTACCAGAAGTTACCTCATC 860214 24 100.0 37 TTACCTCATC ........................ AAAGATATAGTGGATTCGTTAGGCATAAAACCAGATG 860275 24 100.0 40 AAACCAGATG ........................ TTTCCACTTGTAATTAGTTCATCAATTTTCATAGCTAATT 860339 24 100.0 40 ATAGCTAATT ........................ GATCTAAAGTGTGTAAATACATATTTATATTTTTTCCGCT 860403 24 100.0 42 TTTTTCCGCT ........................ ATTTCAATATTTATCTCGTTTATCGGTATGCTGTCTTGTGGT 860469 24 100.0 39 GTCTTGTGGT ........................ AGTACCGCCTAAATACCTCAGGAAATTCACGGCCACAAA 860532 24 100.0 38 CGGCCACAAA ........................ ATAGTAATCAACGTGAGTACTGCACCCGTCGAAATTGA 860594 24 100.0 38 TCGAAATTGA ........................ ATATACTCTAGTTACTGAAGGAGCGACACCGAAAAACA 860656 24 100.0 40 CCGAAAAACA ........................ TATTTTTGTAATCACACCTATGTTTTCAAATCGGGGGTTT 860720 24 100.0 40 TCGGGGGTTT ........................ AACTATTTTTTATACTTAAAGCTTCTTCTTTATCTTTTAT 860784 24 100.0 39 TATCTTTTAT ........................ TAGTGTGTAATCTTCATAAGTTTCTACTTTCTTCTCCTT 860847 24 100.0 40 TCTTCTCCTT ........................ ACTCCTCTTCTTAAAAGCTTATAACTGCTATTTTAAATAG 860911 24 100.0 39 TTTTAAATAG ........................ CACATCTCACCTTTATCTATAACCTTTAAGACGTTAATG 860974 24 100.0 37 GACGTTAATG ........................ CAAAGATGACCCTACACCCCACACAACTTCACTCCCC 861035 24 100.0 38 TTCACTCCCC ........................ GGTGATTAGATGGCAAAAACAATTAGGAACCCCGAAAC 861097 24 100.0 39 ACCCCGAAAC ........................ TTTCCCTGGTCGCAAATAGGGTATGTTGGAATAAGAGGC 861160 24 100.0 39 AATAAGAGGC ........................ ACTATTGCTATAAATCCTACCGTTAAAATGTCAAACGCT 861223 24 100.0 42 GTCAAACGCT ........................ AAGAACTTAAAGCCATAATTGTTCGCATTTAGATTTTGAGCT 861289 24 100.0 38 ATTTTGAGCT ........................ CCCAATGCTAATCCGCCACCTATTGCACCGCCGTATAG 861351 24 100.0 38 CGCCGTATAG ........................ TATAGATAACTGTTTCATCATCTTCATTCTTGCAATAT 861413 24 100.0 40 CTTGCAATAT ........................ TTTGATGATAAAGACAATGGCCCACCGTAAGGCTGTATTA 861477 24 100.0 38 GGCTGTATTA ........................ AATCCCACGCGTGCAACAACAATGGATTTTACACACTT 861539 24 100.0 39 TTACACACTT ........................ ACGAAAGAGAATTTGCTAATTCGTTAATATCTTGAACGC 861602 24 100.0 38 TCTTGAACGC ........................ AATTGCGTCTGTTCTGTCTCTGCACTCTGCACTATTAA 861664 24 100.0 38 GCACTATTAA ........................ ATGAGCTGAAGGAATTAGTTAAGGTCGTAGAGAAAGAT 861726 24 100.0 39 AGAGAAAGAT ........................ CTTATGCGGTCATTAGAACCATACAGCTCCTGGAGGAGT 861789 24 100.0 43 CTGGAGGAGT ........................ TTCTCACATTTATCCTTAGAACCGTCATAATCGTTCAAAATCT 861856 24 100.0 40 TTCAAAATCT ........................ AAATAACCATTGTCATCAAGTTTTACGATGCTTGTTGGTT 861920 24 95.8 CTTGTTGGTT .......................T ACTATAATG ========== ====== ====== ====== ========== ======================== 117 24 39 GATAATCTACTATAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.00%AT] # Reference repeat match suggestion: F [matched GATAATCTCTTATAGAATTGAAAG with 91% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [394,267] Score: 0/0.18 # # Final direction: F [5.41,0 Confidence: HIGH] >NC_012563 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2455808 30 100.0 35 NNNNNNNNNN G........T....T...........T... TACTTGTGATTTTAAAATAAAGAACATTAGGTAGT 2455873 30 100.0 37 NNNNNNNNNN .............................. AGGTTAAGTCAGTAATGATACCTTACTTAGAAGATTA 2455940 30 100.0 36 NNNNNNNNNN .............................. TCAAGTATCGGGAATCTATAGTTAAGCCCTTCTATT 2456006 30 100.0 35 NNNNNNNNNN .............................. CAAAACAATAAGTAATTCATAATTCAAAAATGAGG 2456071 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 5 30 35 ATTTAAATACATCTCATGTTAATGTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [81.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [263,543] Score: 0.18/0.18 # # Final direction: R [0.27,0.96 Confidence: MEDIUM] >NC_012563 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2563318 30 100.0 36 NNNNNNNNNN T.AAT........TC......A........ TAACATTATAGTTTTAGAAGATTTTCAAGGTTTTAA 2563384 30 100.0 35 NNNNNNNNNN .............T.......T........ ATATTGTAGTAAATGCACAAGTAAAATAAGCAAAA 2563449 30 100.0 34 NNNNNNNNNN .............C.......A........ TTTAATGAATTATTACTACAATACTATAAAGAAT 2563513 30 100.0 36 NNNNNNNNNN ..........G..T.......A........ TGACTTCTCTATTTAGGGAATTAATGATTAAGTATA 2563579 30 100.0 35 NNNNNNNNNN .............................. TCACAAAAGAGTAATACTAATGTTCAACAATTAGG 2563644 30 100.0 36 NNNNNNNNNN .............................. GAATTTTTGGTTAAGAACTCTCGAGGATATTAACTA 2563710 30 100.0 35 NNNNNNNNNN .....................T........ AAAATAGGTGTAGAATATGAACCAATTTTAACTAC 2563775 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 8 30 35 ATTTAAATACATCATATGTTACTGTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [81.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [244,456] Score: 0/0.18 # # Final direction: R [0.27,0.41 Confidence: LOW] >NC_012563 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2655984 29 100.0 38 NNNNNNNNNN T.AAT.........T......T....... CAGCCTTACACAGAAAATGCTGTTATAATAATTAGACT 2656051 29 100.0 37 NNNNNNNNNN .............CT.............. CAATTATGGCTAATGGATTTGATACTACACAATTAGA 2656117 29 100.0 36 NNNNNNNNNN .............CT.............. TAGAAGCTCATAACGATACAAGACCACTAAAAAAGA 2656182 29 100.0 37 NNNNNNNNNN ............................. TTAACAGTGAAAGTTCTATAACATCAAATGTAAAGAA 2656248 29 100.0 37 NNNNNNNNNN ............................. TTAATACATTAAAAAAATACAAAGCATATCTAAATGG 2656314 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 6 29 37 ATTTAAATACATCTCATGTTAATGTTCAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [366,218] Score: 0/0.18 # # Final direction: R [0,0.41 Confidence: MEDIUM] >NC_012588 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 827533 25 100.0 39 AAACACAACA ......................... CTTACTTTTTCATGGCACATTCTTGACGCTTGACCGAAC 827597 25 100.0 38 TTGACCGAAC ......................... TTTTTCGCTAAAGTGAGTAAATCTAGGTAATGCTTCGA 827660 25 100.0 41 AATGCTTCGA ......................... GTAATTTTACTAACTCGTTACAAGCTTACAATCTATATCTG 827726 25 100.0 35 TCTATATCTG ......................... TTTTTTAATATTTTTCTAATTTCATCACTGATTTC 827786 25 100.0 41 CACTGATTTC ......................... CTTTCGTCTGCACCCATTTTTTTGCTTAACTCTTCTAGCAT 827852 25 100.0 35 CTTCTAGCAT ......................... AAAAAGTCCACGCTATAATCCCATGAATGTTCGAT 827912 25 100.0 38 AATGTTCGAT ......................... ATCCGTATATAGTAAATAATGCCACCTAAATCTATTTT 827975 25 100.0 38 AATCTATTTT ......................... TTGTCTAAGCTAAAAGCTAAGCAAAAAGCTTATATACT 828038 25 100.0 40 CTTATATACT ......................... AATAATTTCTTTGCTTTTTCTTCCTCTTGTTGTAATAATT 828103 25 100.0 39 TGTAATAATT ......................... ATAACAACTTCGCCTCCCCGTCGTCCTTAACGAACTTCA 828167 25 100.0 38 ACGAACTTCA ......................... TTTGTATAATAGAAACTTGCCTTCCTAAATCTCAGTTT 828230 25 100.0 35 ATCTCAGTTT ......................... AACACTATTCTCTTCCTTACCTCTTTTACGTCCTC 828290 25 100.0 36 TTACGTCCTC ......................... AAGTTAGCCGAGGTAGTGATTAGCCATGGATAGATT 828351 25 100.0 39 TGGATAGATT ......................... ATTTAAATTTCCAGTACCATAAGCAACTGCTTGTCTATT 828415 25 100.0 38 CTTGTCTATT ......................... TAGTATTTATAGCTTCTTTTATCGTAAAAACACCTTTC 828478 25 100.0 40 AACACCTTTC ......................... GTATAGAACAACCACTGCCTAGCACTGTTTGGGTGTCCAT 828543 25 100.0 39 GGGTGTCCAT ......................... TTAAAATTAGATGATTTGTTAGGCATGTTTGGCTATCCT 828607 25 100.0 39 TGGCTATCCT ......................... CCAATAAACCCCTACTGCTTACGTGGCTTAATACGTTAT 828671 25 100.0 42 AATACGTTAT ......................... TTATATCAATAATGATGGTCTTATCACTGCTGTTCTTCTTCC 828738 25 100.0 38 TTCTTCTTCC ......................... ACGAGTTTGTAGAGTTCAAACGTCTGGTTGAGTATGTT 828801 25 100.0 38 TGAGTATGTT ......................... GATTTATCAAAAAGCGGAATAACGAAGACGCCAAATTC 828864 25 100.0 38 CGCCAAATTC ......................... TTCAAAGCTCTAAGCAGGGAGTTAGCCAACGCCTTGTT 828927 25 100.0 40 ACGCCTTGTT ......................... TTTATTATATATAACAATACTATATCCTGCGTCCTTTAGT 828992 25 100.0 37 GTCCTTTAGT ......................... TATTCTAATAATGGAAAGCTACTATGATTTTGTGCAT 829054 25 100.0 40 TTTTGTGCAT ......................... TAATTATCAATAATCCATTGAGTTATTGCATAATATCCTT 829119 25 100.0 36 TAATATCCTT ......................... ATATCTTGACTCATATTTACACCCGAAAAAATCAAT 829180 25 100.0 37 AAAAATCAAT ......................... TTGATATCTAGGGCGGGCGTTAAATTCGTAGAGGCGG 829242 25 100.0 40 GTAGAGGCGG ......................... ACGTGTTATATCTATATCTGTCTTCAGCATGTAACGATTT 829307 25 100.0 38 GTAACGATTT ......................... TTTCGCTTCAGAAAAGTCACTTTAGATCACTTTATATA 829370 25 100.0 37 ACTTTATATA ......................... CGTAATCGTTCCAACGGGCAATAATTCTATATATCGT 829432 25 100.0 38 TATATATCGT ......................... GAGACTTCTACATCTTGTCCGCTCATCTGTGTTCTTTT 829495 25 100.0 38 GTGTTCTTTT ......................... AAATTATATGGCCTGAAGTGGGTGTTAAGTACGACAAT 829558 25 100.0 39 GTACGACAAT ......................... GAGGTTGGACGGCTAACGAATATCCCGCATTAGGCGGAT 829622 25 100.0 40 TTAGGCGGAT ......................... TTCAAACTCCGGGTCTGTCTCTTCGTAATTAATTTTCTTT 829687 25 100.0 36 AATTTTCTTT ......................... TCTAATTTGAATGTTATAACCCTGTTCATAAGTATT 829748 25 100.0 44 CATAAGTATT ......................... GAACTATTGCACCTTTATAAGTATCCTCTTCTTCAGTTTTCTTA 829817 25 100.0 39 AGTTTTCTTA ......................... AATACATTAGCTATACTTGGATATCCAAGATTTATACCT 829881 25 100.0 40 ATTTATACCT ......................... CTTTTGCGTAATAAATTTATACGTCCAATCGGGCATTCTT 829946 25 100.0 GGGCATTCTT ......................... AACATGCTCA ========== ====== ====== ====== ========== ========================= 39 25 38 GATTAATCCTAAAAGGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.00%AT] # Reference repeat match suggestion: F [matched GATTAATCCCAAAAGGAATTGAAAG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-2.40,-1.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [970,1329] Score: 0/0.18 # # Final direction: F [5.64,0 Confidence: HIGH] >NC_012582 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 343449 28 100.0 33 NNNNNNNNNN ............................ CAAATGGCTCAATGCGCGATTGACTACGTTACT 343510 28 100.0 33 NNNNNNNNNN ............................ CAATCAACGCACTAGACAACGCCCAAATGAACC 343571 28 100.0 33 NNNNNNNNNN ............................ CAACGCTATGCCCGCTAAAATCAGTAAACAAGA 343632 28 100.0 33 NNNNNNNNNN ............................ TATATTTCGCTCCCGTCTCGTCAACTAAAATCA 343693 28 100.0 33 NNNNNNNNNN ............................ CTTCAAATAAGTAACCAGCCTCTGACGCTGTTA 343754 28 100.0 33 NNNNNNNNNN ............................ CACCGCTAATCATGGTGGAACGAACGCCATCAA 343815 28 100.0 33 NNNNNNNNNN ............................ TGATTTTGGAAGTAATGGGAACTGAGCGTTAAG 343876 28 100.0 33 NNNNNNNNNN ............................ CCAAAAACCTACGCGGTTTTAAATGGATTCGAC 343937 28 100.0 33 NNNNNNNNNN ............................ TATCTTGGTTTTGCAGGTTGTTAATCTCAGCGT 343998 28 100.0 33 NNNNNNNNNN ............................ TGATTGGTTCCAGTTTATGACAAGAACCAACAC 344059 28 100.0 33 NNNNNNNNNN ............................ TACATTGGCAAGACGTTTGTTTTTCGCTGTGTA 344120 28 100.0 33 NNNNNNNNNN ............................ CGACTTTTGCATCATCGATGTACGGAACGCTAG 344181 28 100.0 33 NNNNNNNNNN ............................ CACTGAGATTGCGTGTCGCCGACTTGCGCTTGC 344242 28 100.0 33 NNNNNNNNNN ............................ TAGACTATCAATGTGCGCTTGCAAGTCTTTTAA 344303 28 100.0 33 NNNNNNNNNN ............................ TTGATCGCTCTGAAATTGTGACTTGTTTTGTTA 344364 28 100.0 33 NNNNNNNNNN ............................ TAGATCTTAATTGTTCGCGTTGAATGGGAAATT 344425 28 100.0 33 NNNNNNNNNN ............................ CAGATTGTAGATAAGCAGGAGACTGCCCACCAG 344486 28 100.0 33 NNNNNNNNNN ............................ CGGTTGATAAAACGCTGCGTAAGTTTTTCGAAG 344547 28 100.0 33 NNNNNNNNNN ............................ TAAAACTTCATAGATTGTTGCCTCCATTGTTTC 344608 28 100.0 33 NNNNNNNNNN ............................ TACGTCAACGGACAAACCAAAACCGAATGGAAG 344669 28 100.0 33 NNNNNNNNNN ............................ TAAGTAACGCTGCTACTGCCCTGAGCTAGTACC 344730 28 100.0 33 NNNNNNNNNN ............................ TACTGGCCGATGAGGTGGACCGCTACGGCTTCA 344791 28 100.0 33 NNNNNNNNNN ............................ TCACCCAGCACATTACCACCCATGATCAGCGTT 344852 28 100.0 33 NNNNNNNNNN ............................ CGAGTGGGTTTAGGTTGTAGGTTGCACATACGC 344913 28 100.0 33 NNNNNNNNNN ............................ TTCGAAAAGCTATTAGGCGGCATAACCACAGTT 344974 28 100.0 33 NNNNNNNNNN ............................ CAACAAACCAGCCACTTTGCATTTTGTAGCAGA 345035 28 100.0 33 NNNNNNNNNN ............................ TGGAAGTTATTTATATTGGACCTGATTGCACGG 345096 28 100.0 33 NNNNNNNNNN ............................ TACTTTGGGCCTTGTTTTATGTGCCAGTGCCCG 345157 28 100.0 33 NNNNNNNNNN ............................ CCACTATTTCAATAATCGGCGTAGCTCCGACTG 345218 28 100.0 33 NNNNNNNNNN ............................ CGTAATCTTCTTTGTCTGAGTAATCCAAAATAC 345279 28 100.0 33 NNNNNNNNNN ............................ TCATGGCAGCGATATTTGTTTTACCCTTCATAC 345340 28 100.0 33 NNNNNNNNNN ............................ CATCTGGAACGCACTCAAGCGGCAATCCGAAGT 345401 28 100.0 33 NNNNNNNNNN ............................ CAGCAATGTGTTATCCAATGCGAAAGCGCCGTT 345462 28 100.0 33 NNNNNNNNNN ............................ TATTTTGCGTATCACCGAAGCGCTGTAGGTTAT 345523 28 100.0 33 NNNNNNNNNN ............................ TACGTCCAGCATTACCGCCGCGCCGTGTCGAGT 345584 28 100.0 33 NNNNNNNNNN ............................ TCCTCCCTGCTCATATGCCGTTAAAACTTTCTC 345645 28 100.0 33 NNNNNNNNNN ............................ TCTGATGCGGCAAGCTCTTTCGCTAGCTCGATT 345706 28 100.0 33 NNNNNNNNNN ............................ TACAACATCCATGCAAGCGGCAAAGAATACAAA 345767 28 100.0 34 NNNNNNNNNN .....................TGTG..T CCTCTTTAATCGAATTCCATAACGGTGACGTTAA 345829 28 100.0 1 NNNNNNNNNN .................T..AT.ACAGA NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 40 28 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-12.00,-10.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [45,114] Score: 0.18/0.18 # # Final direction: F [1.05,0.55 Confidence: LOW] >NC_012588 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 848255 24 100.0 38 ATATAGTATA ........................ TATACTGGAAGAGGGGACTGTGAAGTAGTTACTGGTGC 848317 24 100.0 42 TTACTGGTGC ........................ ACTAGGACTGTCCGCTTTCGACCCAAAGCGGACTGAAGAGAT 848383 24 100.0 39 CTGAAGAGAT ........................ AAGACATAAACAAAATCTGCAGAAGTACAACTCAGGTTG 848446 24 100.0 39 ACTCAGGTTG ........................ AGAACAGAAAAAATTATTGCAAGGATTTGATGCGGTTAT 848509 24 100.0 41 ATGCGGTTAT ........................ ATAGATGCCCATCCGATAGCTTCAGCGACGCCTTCAGTTGT 848574 24 100.0 40 CTTCAGTTGT ........................ TATTTGAAGATGAGGCTAATGCTTATCAAAAATACGCTTA 848638 24 100.0 43 AATACGCTTA ........................ ACAGGATCCTCAATTGGCAAATACATATGCTAATATAATTGCA 848705 24 100.0 38 TATAATTGCA ........................ ACTTGTTGTACTATGTTATTTACTATTTTCTTCTTTTT 848767 24 100.0 40 TCTTCTTTTT ........................ CTTCTATTACTCCTCCCCCCTGGATATTTATTGTCGAATA 848831 24 100.0 38 TTGTCGAATA ........................ TTAACTTATGGGTATATTAGATGCCTATCATGCAGTAA 848893 24 100.0 39 CATGCAGTAA ........................ AGAAGAGCAAACAAGAAAGGAAGAGACTGTAGATCTACG 848956 24 100.0 41 TAGATCTACG ........................ GAAGCACTGTATTGAATATTGTAACTATAGCTATTTGTCAC 849021 24 100.0 39 TATTTGTCAC ........................ AGTGTTCCTACGTAATTATGAGCCTCGTCCATAGCTATT 849084 24 100.0 41 CATAGCTATT ........................ ATATTAAACACAATATAATGATAGATGAGGAATTTGCTTAT 849149 24 100.0 40 ATTTGCTTAT ........................ TTGACCTTATCGGCAATTTTCATAAAACCATCTCCTTAAA 849213 24 100.0 38 TCTCCTTAAA ........................ TGTCGACAACGGTTATTTAATAATATTAAAACTTGATA 849275 24 100.0 36 AAACTTGATA ........................ ATCAACATCACAACAACAAATACAATTGCAAAAAGT 849335 24 100.0 39 TGCAAAAAGT ........................ TCCAGAACTTGTTGCACTAAAAGTAAATATGTCTATAAA 849398 24 100.0 41 TGTCTATAAA ........................ TCTGGATTTACTGATCTTATTAAGTTATGGCAGAATATAGT 849463 24 100.0 40 AGAATATAGT ........................ GAAAATTTATTACTTGAGGTGTATATAATTTTTGTAGTAA 849527 24 100.0 37 TTTGTAGTAA ........................ TTAATTCAGTTTCGTAGAATCCTAAGTTTGAATTTTG 849588 24 100.0 38 TTGAATTTTG ........................ CCTAAAGGACGATAACCATTAGGTATTTCTATATCATG 849650 24 100.0 38 CTATATCATG ........................ TATGAGTATGAGCTATATAAAGTTAACGATTACTCAAA 849712 24 100.0 40 ATTACTCAAA ........................ CTGGATTACCTGATATTGCTGCAAGCTCATAAAAGACAAC 849776 24 100.0 38 AAAAGACAAC ........................ TTTCGTGTTCGGAAGTGATATATATCACTTTATATCGT 849838 24 100.0 42 TTTATATCGT ........................ ATATTCTGTCACCGTTATCACTCCCGTCCAGTACTCCGTTGC 849904 24 100.0 37 ACTCCGTTGC ........................ AGTAGAACCAAGTAAAGGAGGAGCAGGGGCATTTGCA 849965 24 100.0 GGCATTTGCA ........................ TGAGGGTTTA ========== ====== ====== ====== ========== ======================== 28 24 39 CTTTCAATTCTATAGTAGATTATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [50,303] Score: 0.18/0.18 # # Final direction: R [0,4.68 Confidence: HIGH] >NC_012589 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 631174 24 100.0 42 AAAACCCTCA ........................ ATTATTTTTACTAAAGAAAGATGGAATAGCAGCAAAAGTGCT 631240 24 100.0 42 CAAAAGTGCT ........................ ACTTACGTATTTTGAACAATTTACGTAATCTTGAGTTAGAGA 631306 24 100.0 44 GAGTTAGAGA ........................ GTCTCTGGGTTAATCTCATATACTACTTTTATAAGTCCCTTTTT 631374 24 100.0 41 GTCCCTTTTT ........................ TGCCTTGCTAAACTTACATGGTAATTTATAATTTTTGGAAA 631439 24 100.0 39 TTTTTGGAAA ........................ ATTTATTTTCGTTTTACTCGAGAGTTCATTTAATACTTT 631502 24 100.0 42 TTAATACTTT ........................ GTATTTCATTTAGTCTTAACAAAAGTGGATACAGAACCTAAT 631568 24 100.0 41 AGAACCTAAT ........................ AAACATGACAGAAGACCAGAAAAAGCAATTGTTAATGCAAA 631633 24 100.0 41 TTAATGCAAA ........................ TTCTTTCTTCTACGATATATCCTCTAGCTATAGCCTCAGCT 631698 24 100.0 43 AGCCTCAGCT ........................ AATATAAAGTATATCACAAGGGTTGTTTATGCTGTAGATATAG 631765 24 100.0 39 GTAGATATAG ........................ TTGTTTCTTTCATGATTACTCGGAATAAAAATCGGATCT 631828 24 100.0 39 AATCGGATCT ........................ ATAGATCCCTCATACTTACTACGAAAATTAGAGGAGTAC 631891 24 100.0 45 AGAGGAGTAC ........................ ACTTGACGTCTTGACGGCTTACGATGAGTAAACAAGTAAAATTCA 631960 24 100.0 37 GTAAAATTCA ........................ AATTCGGCATGGTTTACAATAATCAATGCTTTTTCCC 632021 24 100.0 40 GCTTTTTCCC ........................ TTTTTCGTCAATTCATGAACTAAACTTATCTCATCTTCTT 632085 24 100.0 44 TCATCTTCTT ........................ ACAACCCTAGTGCAGTAGCTATATTCTTTGCGTCTTGGATATCG 632153 24 100.0 40 TTGGATATCG ........................ TGTTCTATCAGCGTCGTCAAGAAAACGCCACCGTATACGG 632217 24 100.0 43 CCGTATACGG ........................ AGTAAATTGTACATCAAACTGTGCATCATCTGAATGCGGATAT 632284 24 100.0 38 ATGCGGATAT ........................ ATACGAATCACCTTTTTTCCCGATTACGTGACAAAAAC 632346 24 100.0 40 TGACAAAAAC ........................ TCCACAATTCTTCTATATCGTCGCTGTAATACGTAAGCAT 632410 24 100.0 40 ACGTAAGCAT ........................ TCAATTTTAAGAGCTTTAGTGGAACTAATTCAACAAAAAC 632474 24 100.0 41 CAACAAAAAC ........................ ACATGATATACAAGATAAAAAAGTGTTACAATAACAGTTAT 632539 24 95.8 40 TAACAGTTAT .........T.............. AAAACTAAAAACTTCAATTCACTTATAGCTTTTTTCCTTA 632603 24 100.0 39 TTTTTCCTTA ........................ AAAATCACGCATGTAGGTCTCTATATCGTACAACACTTC 632666 24 100.0 37 ACAACACTTC ........................ ATATTCTTCCTTTTTCTCTTCGTCATTTTTTATTAGT 632727 24 100.0 40 TTTTATTAGT ........................ GTCACATTTAGCAAAAACTATACTCTGTTCTTGTCTTATT 632791 24 100.0 40 TTGTCTTATT ........................ ATTAATCTGTCATATTGCGTAATTTATGATATAAAATATA 632855 24 100.0 41 ATAAAATATA ........................ GTTCGTGTTCTGGAGGATTAATTATCGGTTCTGGTTCATGT 632920 24 100.0 43 TGGTTCATGT ........................ CTCATCTCTTTTAGTTCTCCGTTATCCATCTCGTAGCATCCTG 632987 24 100.0 42 TAGCATCCTG ........................ CACGTAAATATGAGTCAGGTATTACATAGTTGATGACATTGT 633053 24 100.0 39 ATGACATTGT ........................ AATATTTTCGGTATCACAAACGAAAATTGTGGTATTTTT 633116 24 100.0 45 TGGTATTTTT ........................ GACTTAACTGTAAAAAGTTAATTCCCTTTTTTCTCTTTTCTTTCT 633185 24 100.0 40 TTTTCTTTCT ........................ AAACGTAAACCGATCGTCATAAATCCACTTCTCAGTTTCG 633249 24 100.0 43 CTCAGTTTCG ........................ CTATTCACTATGCGTTTATTATCTAATATGACAAAGAAAAAGA 633316 24 100.0 40 AAGAAAAAGA ........................ TTATTTCTGTATTCAAATTTGATTTTTTCTTTGTTTCTGA 633380 24 100.0 41 TTGTTTCTGA ........................ TTGTGATTGAACCGCTTAGGCTGAGTTTTCTGAAACTTCTC 633445 24 100.0 44 GAAACTTCTC ........................ TTAATCATATTTACTAGAGCCGGACCTCCACCAAGTCTATTGAG 633513 24 100.0 40 GTCTATTGAG ........................ CCTTTTTCACAGATATCTTAATTATTTCTTGTCCTAAGAT 633577 24 100.0 42 GTCCTAAGAT ........................ ATTTCCTATTTCCTAATGAACCTAGAATTACAGTGCTGACTT 633643 24 100.0 44 GTGCTGACTT ........................ AACAAACTTATCATCAAATACATTGAGAAAATCTATGAACTAAT 633711 24 100.0 43 ATGAACTAAT ........................ TAGCTCTGCTTTCATTAGTTAGAAAATCAATTTATGCAATTCT 633778 24 100.0 ATGCAATTCT ........................ TTTTCTCTTA ========== ====== ====== ====== ========== ======================== 41 24 41 GTTAATCTACTATAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [274,4756] Score: 0.18/0.18 # # Final direction: F [4.5,0.18 Confidence: HIGH] >NC_012589 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 619171 24 100.0 43 NNNNNNNNNN AGGG.GT.AT.............. AAATATGTGAAGACGAAGCAATTGCAAGGGTAATATACACTAA 619238 24 100.0 39 NNNNNNNNNN ........................ AAGTGAGGAAAAGAACCTTTCAAATCTCCTATCGGTGTA 619301 24 100.0 39 NNNNNNNNNN ........................ TCATTACACCAGTATATTCACCATCACTGTCACCTATCG 619364 24 100.0 40 NNNNNNNNNN ........................ TCGATAATAATCCACTTTCTAATTCTCAACAATTATATTT 619428 24 100.0 38 NNNNNNNNNN ........................ TCAGTAAATGAACAAGTTTCAGCGGTCTTGTCTGAATA 619490 24 100.0 44 NNNNNNNNNN ........................ TTCTTTTTCTTTTTTTGAGAAGCCGTTAAAGAAAGTTAAGCTAA 619558 24 100.0 40 NNNNNNNNNN ........................ ATAAACTATATCCTATTATAACAAGCAAAAACCTTACCAT 619622 24 100.0 41 NNNNNNNNNN ....................C... TACGTGTTCATACATGTTGATGGAATTGCTCCAGTTGCAGA 619687 24 100.0 36 NNNNNNNNNN ........................ TCTTGAAGACTTGGCAAAGAAAGGGTTCTTAAGCTT 619747 24 100.0 40 NNNNNNNNNN ........................ ATGATTCGCTTAACGATTTTATGAACAGAGTATTATGGTG 619811 24 100.0 40 NNNNNNNNNN ........................ GCTGTTTGAGAGAAGAAATAAATAAAAAACGGGTTAGCTT 619875 24 100.0 42 NNNNNNNNNN ........................ ACTGCTTTTGCTTTTTCTTGGTGAGAAGTACAGATGCTCATG 619941 24 100.0 38 NNNNNNNNNN ........................ TTGTGACAACCTTTTAGGTACTACCGTACGCCAGGCTA 620003 24 100.0 41 NNNNNNNNNN ........................ AAAGGGGGGCAAAAATCAGGATTAGAGTCTTTTTTAGATCA 620068 24 100.0 43 NNNNNNNNNN ........................ GGGCATAAGAAGCTGGACAGGATAATACAGTATACGCAAGTCA 620135 24 100.0 40 NNNNNNNNNN ........................ ATAGTGTGTTAAAAATCAGCTATCTAAGCGGATATATAAA 620199 24 100.0 40 NNNNNNNNNN ........................ AGCTAGCCGGTACATTGAAAGTAGGAATCTCGATTACTTT 620263 24 100.0 41 NNNNNNNNNN ........................ AACGCTATGATCACTAGTGCTATAACTATCCAAACCCATAC 620328 24 100.0 39 NNNNNNNNNN ......................G. TTTGTTAAACCAGTATTTAAACTTTTTCCCTAACTAGCT 620391 24 100.0 44 NNNNNNNNNN ........................ CCCAGTATTGCCAAAGGTTTTTGTCGATGCCTATACATATGTAA 620459 24 100.0 41 NNNNNNNNNN ........................ ATAGGCGTATTAAGCTCTAGCAACCTCTGGAGCTCATCAGT 620524 24 100.0 41 NNNNNNNNNN ........................ CAGCCTTAATGTTTAAAAATAAAAATCTCGTTGGAGCAAAG 620589 24 100.0 41 NNNNNNNNNN ........................ GAGGTCGACTTGGATACGATACAAAATGCACAAAGACTGAT 620654 24 100.0 40 NNNNNNNNNN ........................ GTGTTATTACAAGGTACTATACAAAACACAAATACGTCAG 620718 24 100.0 40 NNNNNNNNNN ........................ AAAAAGCTTATCAAGAAATTGTTAAAAATGTAAATTTATC 620782 24 100.0 40 NNNNNNNNNN ........................ ATGGCAAGTCTTAAGGAAATATTAGATCAATTGGAAAAAC 620846 24 100.0 40 NNNNNNNNNN ........................ TCGAAACGATAATTAGGAGAAGAGTTACTATACTAACATA 620910 24 100.0 43 NNNNNNNNNN ........................ GGAAAACTTCGACACTTTATATGTGTTTAGTTTTTCTTCTGGA 620977 24 100.0 42 NNNNNNNNNN ........................ TGAAAGGAACTTAGAAAAAATATTGAAGAGATATTCGTCTAA 621043 24 100.0 40 NNNNNNNNNN ........................ AAATTGATTCATGTCAAACGGTGGTGTGGCATTTATCTGT 621107 24 100.0 44 NNNNNNNNNN ........................ TAGGTTAAGTTGTCCTTACTCGTCACATTGGTCTAAGAAGAATA 621175 24 100.0 39 NNNNNNNNNN ........................ CGTTATAGAGTATCTGCCAGCCGTATTCCGATACCCCAT 621238 24 100.0 44 NNNNNNNNNN ........................ ATTATGATGAGTATAAAAGCAGAATCGAACAGAATTATAATTTT 621306 24 100.0 41 NNNNNNNNNN ........................ AAAAGAAATTTCATAAAGCCTTTTTATGGTGATACAAAGGA 621371 24 100.0 42 NNNNNNNNNN ........................ TTCAATTTAGGCTATTCAAATCATTTTTGTGTAAATATAGAC 621437 24 100.0 38 NNNNNNNNNN ........................ CTGTTTCTTTTTCTCTTTCCCATCACAAAAAATTGTAA 621499 24 100.0 40 NNNNNNNNNN ........................ GTATTTCACGGGATAAATTTTGAAATCGTGAAAAAAGCAG 621563 24 100.0 42 NNNNNNNNNN ........................ CCATATGAAAGGACTTCTCATAAATGGAAAAATACTTAATCA 621629 24 100.0 41 NNNNNNNNNN ........................ TAAAGAAAACTTTAAATATGAGAGTTGGCATAGATAAAATT 621694 24 100.0 40 NNNNNNNNNN ........................ TTAATGAGGGGAAAAGAGTGGTGGATCATTATTATATTAT 621758 24 100.0 44 NNNNNNNNNN ........................ GAGATAAAGAAACAACTCAAAATGAAAAAAGAAGAGTTTTAAAA 621826 24 100.0 40 NNNNNNNNNN ........................ GTCTTTTTCCATCTTCTGTTATGATATCTATTCGATCAGA 621890 24 100.0 40 NNNNNNNNNN ........................ GCTAATAGTTTTTAATTCTATTAGGTCATTATTGCATATT 621954 24 100.0 41 NNNNNNNNNN ........................ CCCGTGAACTTAGGAAATGCAGAGGCTGAGCTTAGAAAAAT 622019 24 100.0 36 NNNNNNNNNN ........................ TTCCTTCCACGCCCCTACAAGAAGGATGAGTTTTTG 622079 24 100.0 40 NNNNNNNNNN ........................ ACTAAATAATTGGTATAGCGTGGTGTACACGTATAAGTAC 622143 24 100.0 40 NNNNNNNNNN ........................ AATTGGCTCAGAATTCCCAATAAAATTACGAAGTGGAATG 622207 24 100.0 42 NNNNNNNNNN ........................ ATTTGTTGATTTGCAGTTGCAATAAATCCAGCGATATAAATT 622273 24 100.0 39 NNNNNNNNNN ........................ CTGAGTTTGATGAAGGAATTAATGAAGAAGAAAGAGAAA 622336 24 100.0 40 NNNNNNNNNN ........................ CACAGACTTTCATGGTGTAGAAGTCATCCTGATAAATGTA 622400 24 100.0 41 NNNNNNNNNN ........................ ATGTATGTATCAGTCACGTATTCAATTTCCTTCCTTGGTTC 622465 24 100.0 40 NNNNNNNNNN ........................ TCGTACATTCCTTTCCTATATGCCATCCAGAAATTACCAA 622529 24 100.0 39 NNNNNNNNNN ........................ AATTAAAGTATTAATGAAGATGAAACTTAAGAACCATAA 622592 24 100.0 40 NNNNNNNNNN ........................ ATGTCGTTAACCGCCCTAGTCAAGGTGCCGGTCAACTGAT 622656 24 100.0 40 NNNNNNNNNN ..............C......... CCCAGGTCGGCTCCAGTACTTCCCCTTGCGTATAAATTGA 622720 24 100.0 42 NNNNNNNNNN ........................ ATTAGACGCGGTGCCTTATCCGCGGGTAAGTTTGTATTTAGG 622786 24 100.0 43 NNNNNNNNNN ........................ ATTCAAACATCTGCTTGAGTACATCAAACGTTACGATGAGAAC 622853 24 100.0 39 NNNNNNNNNN ........................ CCGTAGCTGTGTTCAGCTTTGCGTTATCCAAACTGTTCA 622916 24 100.0 40 NNNNNNNNNN ........................ ATTTTTGCCCGCTCCTCCTCCTATCGGCATACCCTGACTA 622980 24 100.0 40 NNNNNNNNNN ........................ TGTAAAGTCGGTGTTATACAATATTCTTTCTCAAAAATTT 623044 24 100.0 41 NNNNNNNNNN ........................ ACAAGTTTGATACATTGTTTTTGGTCATCAATTTCAACATT 623109 24 100.0 41 NNNNNNNNNN ........................ AATCCGCCATGTCGTGTGTGTGATCGAATGGGAACATGTCT 623174 24 100.0 39 NNNNNNNNNN ........................ TCGCTATCTTTGTGTACATGGCTTTCTTTGCTAACTCGA 623237 24 100.0 40 NNNNNNNNNN ........................ AACTACGGTATTAGTAAATTAAGGGAAGGTGAAGAGGAAA 623301 24 100.0 40 NNNNNNNNNN ........................ TATAAAACATAATAATTAGATCTGCTTGTTTGTAGACAAT 623365 24 100.0 39 NNNNNNNNNN ........................ AAGAAACTTAGTGACATGATCAATTATCACAGTATAAAT 623428 24 100.0 40 NNNNNNNNNN ........................ GCTTAGTTATGAAACCTGCGAGAACATTGGAGATGTTAAT 623492 24 100.0 40 NNNNNNNNNN ........................ TCGATTAGTTTGTCGATACAGTCCTGCAGTACGGGGGAAT 623556 24 100.0 40 NNNNNNNNNN ........................ TGAGGTGACCTGACGATGAAGGTCGCAATATGGATTTCTA 623620 24 100.0 42 NNNNNNNNNN ........................ CGCTTACACTTATTTTATTACAATTGCTACTAATTATCGATA 623686 24 100.0 38 NNNNNNNNNN ........................ CCGCCGTTCATGGTTTTCAAGAAAATTTGAGTTTGAAA 623748 24 100.0 40 NNNNNNNNNN ........................ AACACTGGGATTGGCAAATGTCCTTCGCCAGTATTAACAA 623812 24 100.0 41 NNNNNNNNNN ........................ TTTAAATATCCCGGAAGCCAAAGATTATTAAGGTTAGTGGA 623877 24 100.0 40 NNNNNNNNNN ........................ CGGGCATCATTACCACCTACCTCCCTACCTCGGTAAACTG 623941 24 100.0 40 NNNNNNNNNN ........................ AGCGTAAATTATCCACCTATAGGAGAATGTTCGATAGATA 624005 24 100.0 39 NNNNNNNNNN ........................ CTCTACTTGTTAGATGCTTGCTACTTACGCTATATTCAA 624068 24 100.0 41 NNNNNNNNNN ........................ TAGACGAGTATACTTATTGCACTGATGTTGATCATTGTTTT 624133 24 100.0 40 NNNNNNNNNN ........................ AGAAACCAAAGCAAGAGCTGGAAACCACATGAGGAGTTTT 624197 24 100.0 42 NNNNNNNNNN ........................ ACAGAGCGCCCTCTGGTATGATGTCCGGATACTTATAAAATA 624263 24 100.0 41 NNNNNNNNNN ........................ TAATTTATACGCCAGTACGCGGCAGATCTACGAATATCGTG 624328 24 100.0 41 NNNNNNNNNN ........................ TGCTAAATTATTAAGAGCTGAAAGCAAAGATGAAATAATTG 624393 24 100.0 39 NNNNNNNNNN ........................ TATTCGATATGGTGAATTAGCAGTCGACGTTGACCTGTG 624456 24 100.0 39 NNNNNNNNNN ........................ ATACATAATTATTTGATGAAAGATGGAAGTCGATTATAA 624519 24 100.0 41 NNNNNNNNNN ........................ AATAGATAACGGAGCGGAAATACATTACGAGAATGGATATA 624584 24 100.0 40 NNNNNNNNNN ........................ AATATCCCAAATTGAAATATATTGCAACAGTTTATAATGT 624648 24 100.0 41 NNNNNNNNNN ........................ GTAACTTGTACGAAAGAAGAGGAAGTATCCTGTCAACCAGA 624713 24 100.0 41 NNNNNNNNNN ........................ AGAATGGCACCGCAACTGTAGTGGATGCTGAGGTAATATAC 624778 24 100.0 43 NNNNNNNNNN ........................ TTACCATAGCGTGGACTGAAAGCATATCTACACAAGTACCACT 624845 24 100.0 41 NNNNNNNNNN ........................ TTGATGAAGTCCAGAGTACCGACTGCGACTCCGCATTATGC 624910 24 100.0 36 NNNNNNNNNN ........................ TGCGTCTAAAAGAATGAGTAGTCTCTCTTTAGTCCT 624970 24 100.0 39 NNNNNNNNNN ........................ GGATCATAGCCAAACGCCTGAAGTAATAAAGCCCAAAGT 625033 24 100.0 40 NNNNNNNNNN ........................ CGGCATAGATAAATTGCCTGAGGAATCGCTCCGCGGGTAT 625097 24 100.0 39 NNNNNNNNNN ........................ ACATTATTTTGACGTAGCAAACGAAGTCCCGTCTCTACT 625160 24 100.0 40 NNNNNNNNNN ........................ TAGGTAACTGGTACATTTACTTAGAGGAGGGAATAAACGT 625224 24 100.0 37 NNNNNNNNNN ........................ TTAATTCATCATTTTCCAGATGGAAATGTAGTCATAG 625285 24 100.0 40 NNNNNNNNNN ........................ ACAATCTAATTTTGTGAATGTTTGTTTTTTGTTAATAGAC 625349 24 100.0 41 NNNNNNNNNN ........................ ATTACAGAATGCTAAAATGATAAAGACAGAAAAAGAGACAT 625414 24 100.0 39 NNNNNNNNNN ........................ TATGTAATCGTGGGTAATTACACTAGTAGAATTCGATTG 625477 24 100.0 40 NNNNNNNNNN ........................ ATAGGACAAATAGCGAGCACGTTAGCGGTATGGACAGAAC 625541 24 100.0 41 NNNNNNNNNN ........................ GGAACCAACACTATTATCGTAGAAGTATCAAGTGTACAAAA 625606 24 100.0 40 NNNNNNNNNN ........................ CAGTTTTACCATCTCCACTTGAGAATATCCAAATTCCTCA 625670 24 100.0 41 NNNNNNNNNN ........................ ACGGGACATTTTATTCCCCTTAAAACGGCGTATAAAAGAGT 625735 24 100.0 40 NNNNNNNNNN ........................ TAAGTGCCGAGCTTTGCTAGACTCCCCTCAAGTGCGGAAC 625799 24 100.0 45 NNNNNNNNNN ........................ TCGCATATAACCCCCTGTTTTCTCCCCAACAAGAAAATGTCATCA 625868 24 100.0 40 NNNNNNNNNN ........................ AGGGTTGTCGTCTATTAGCACGACGTCTCCCAGACCCTTA 625932 24 100.0 42 NNNNNNNNNN ........................ ATTAAAGTTAATGAGGATGGAACGATGGAGACACTTCAAGAA 625998 24 100.0 39 NNNNNNNNNN ........................ AGCTAGTTAGCTAGTTATATAATATAGTAACTTATAAAT 626061 24 100.0 36 NNNNNNNNNN ........................ ATTATTATCTTGTACATGTGACACATCATTATACAT 626121 24 100.0 43 NNNNNNNNNN ........................ ATGTAATAATTTAGGTCACCTAACGCTATGTACTTCTTTTCCA 626188 24 100.0 42 NNNNNNNNNN ........................ AAGAATGGATGTACCTAGCTATCCCCCTAATCCACAGAATCT 626254 24 100.0 40 NNNNNNNNNN ........................ CTATATAAATCTCTTTACGCTCTTACTTTACGTGAATCTA 626318 24 100.0 40 NNNNNNNNNN ........................ ATACAAATATTTCAACATTAAATGCAATAAGTGTAGATAT 626382 24 100.0 40 NNNNNNNNNN ........................ CTGAAAAAGTTATTAAATTCAATATTACAATGGCTTATGG 626446 24 100.0 42 NNNNNNNNNN ........................ AGAAGAAAAGTTAAATCAAGAACAAAATTTAAATCAGGAGAT 626512 24 100.0 41 NNNNNNNNNN ........................ TCGTTGTTAACTCTGCCTTTCCATTATCAACAAAGAATTAA 626577 24 100.0 40 NNNNNNNNNN ........................ CTCCATTCTCGTGGAGCCAGATTGGTTACGTGGGGATAAG 626641 24 100.0 39 NNNNNNNNNN ........................ TTATCGAGGTCTACAACTAGGACTTTCATAAGAAAAAAT 626704 24 100.0 42 NNNNNNNNNN ........................ ATGCTAATCATTACATTTAAGATAATACACAAATATATAATT 626770 24 100.0 44 NNNNNNNNNN ........................ TGTAGTTTGTCAATCTTTTCATATGGTAACGGAATAGTCAACCT 626838 24 100.0 41 NNNNNNNNNN ........................ CCAACACCTACAACAAACGGGCTGGAAATGATAAATAACCA 626903 24 100.0 40 NNNNNNNNNN ........................ CTCATCATGGGATTTCAAGAGCTATATCTCACGCCGTCAA 626967 24 100.0 41 NNNNNNNNNN ........................ GTGAATTTTCTAATTGATTTAGCTAAGAAATTAAAGAATGA 627032 24 100.0 37 NNNNNNNNNN ........................ TGCTTTACAATTTTTTTCATCGCTGCATATAAAAAAT 627093 24 100.0 1 NNNNNNNNNN ........................ NNNNNNNNNN ========== ====== ====== ====== ========== ======================== 124 24 40 CTTTCAATTCTATAGTAGATTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis suggestion: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [878,355] Score: 0.18/0.18 # # Final direction: R [0.18,5.18 Confidence: HIGH] >NC_012589 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 633842 24 100.0 44 ACAATTTTTA ........................ AAGCAATGGATTGCTGAATATAGAACCTCCTGTACCTCCTGCAC 633910 24 100.0 38 CCTCCTGCAC ........................ TCTATTGCGACAGTTTGTATTGTCATTTCAATTTTAAA 633972 24 100.0 39 CAATTTTAAA ........................ ATATCTATTTTAAAAACGCAATTAAGGAATTTTCTTATT 634035 24 100.0 39 TTTTCTTATT ........................ TATCTTCTCCACAAGAAATTCAGCTCACGGCACAATCTC 634098 24 100.0 39 GCACAATCTC ........................ TACTTCGTTTAAAAAGTCAACTGATGTCTCTGCGAAAGC 634161 24 100.0 42 CTGCGAAAGC ........................ CAAATCTATTTTTTGCAATTTTACTAGCTTCAATTTTTGAAA 634227 24 100.0 40 ATTTTTGAAA ........................ TCTCTGCTTGACTCAATAGTGCCGATAACTCTTTCATTTT 634291 24 100.0 41 CTTTCATTTT ........................ GAACCATAACTCGTGGCAAACGTTACGTCTTCGTAGTCTCC 634356 24 100.0 40 CGTAGTCTCC ........................ CCTACGTCTGCTGCTCTCAGCCCTGCTAATGCTGCTTCAG 634420 24 100.0 43 GCTGCTTCAG ........................ CGCCATATTTTTCAATATCTTTATGATTTCCCTCACGTGCCAT 634487 24 100.0 40 CACGTGCCAT ........................ TTGATGTTCCTCCATTTGCAATAAGCTGAACGGCATTTAT 634551 24 100.0 42 CGGCATTTAT ........................ ATTTTGTTTTCTACAAACGTGTTCATTTTCGGCTCTAAGTAT 634617 24 100.0 41 CTCTAAGTAT ........................ GCGAAACCATAGATTCACCTCCTCACCTTCTTAGACCACCC 634682 24 100.0 40 TAGACCACCC ........................ ATTACCAGAACGGGCAACCCATGATAGTAAACGACCCCAT 634746 24 100.0 40 ACGACCCCAT ........................ ATAGATCCCTCGTACTTACTACGAAAATTAGAGGAGTACC 634810 24 100.0 39 GAGGAGTACC ........................ GTCGGGGTGTTTAGTAGCGACCTCTTCCTTAAAACTTTT 634873 24 100.0 40 TAAAACTTTT ........................ TCCGAAGTCATAGAAGAGATTTACAGGAGAAAGAAGGCGA 634937 24 100.0 38 AAGAAGGCGA ........................ TCAACTGCTATCTCCTGAGCTGTAACACGTTCATATGT 634999 24 100.0 37 GTTCATATGT ........................ GATTCAATAAGATCTTCATACTCTCCAAGAGTATACA 635060 24 100.0 41 AGAGTATACA ........................ TAATTCGCTTATTAGACAAAATGCACTATTGAAACTAAAAA 635125 24 100.0 39 AAACTAAAAA ........................ TTCATCTTTACTAGCTAACTTATTTATTTTTACTTTTAT 635188 24 100.0 40 TTACTTTTAT ........................ TACATGGAGAAGCAGTATATTGAACTATCTAGAAAATATT 635252 24 100.0 42 AGAAAATATT ........................ CGCATATTTCCCAGGAGCAATCTTCGCAACTCATTACTCTAC 635318 24 100.0 39 ATTACTCTAC ........................ TACGTGGCTTCTAACCAGAAGAACCACCCATCGCACTCA 635381 24 100.0 40 ATCGCACTCA ........................ TTATTTGTTCCAATTACTAATTTTCCGATACTTCCATAAA 635445 24 100.0 40 CTTCCATAAA ........................ AACGACTTACAAGCAATTGCCCAGGAATTGGCGGATAGGA 635509 24 100.0 40 GCGGATAGGA ........................ TTTGCGATAAGATTAGAAACGTTAGAAACATCAATACCAG 635573 24 100.0 44 TCAATACCAG ........................ TCTTTCTCCTCTTCGGCGCTCTTGAAGAACGTAACAATAGCCAC 635641 24 100.0 40 CAATAGCCAC ........................ CCTCTTCAGCCGTAAGATCTACATACTCCACAGAGATGAC 635705 24 100.0 41 CAGAGATGAC ........................ ACAGCGTACAAACTGAAGATCCTCAAAGGAACGCCAACAGA 635770 24 100.0 40 CGCCAACAGA ........................ GTAAGCTGGTAGGTCTGGTTGGTGAAGGGGTTTATGTATT 635834 24 100.0 40 TTTATGTATT ........................ TTCATGGACATTATACACTAGTAAATCACTGCTGTCCTCT 635898 24 100.0 38 GCTGTCCTCT ........................ GTGGCGTACAAACAAGCAGATTACATTATTCTTTTCTA 635960 24 100.0 39 TTCTTTTCTA ........................ ATAAGGATCGTTTTTATGTTCTTCTTCGTCATCATCTTC 636023 24 100.0 38 CATCATCTTC ........................ CATGAAACATCACAACAACAAACTAGAGAATCAAATCA 636085 24 100.0 41 AATCAAATCA ........................ ATGGCTACATCTAGTTTCATGGTCTCGCAAGGATATATGCC 636150 24 100.0 43 GATATATGCC ........................ GCAAAATGCTTAATACCTCTAATTTACTTCTGTCGTCTAACAA 636217 24 100.0 41 CGTCTAACAA ........................ GAAGAGGTATTGAAAGGAAAACGGTGCAAAAACGAAGGAAA 636282 24 100.0 38 ACGAAGGAAA ........................ AAGACTTCCAATGCGAGTTGGAATCCTAACGTAGTTAA 636344 24 100.0 40 ACGTAGTTAA ........................ ATTAGTATTGAAATTAGTAACGACAAACATATTTCTAAAA 636408 24 100.0 39 ATTTCTAAAA ........................ ACCTATTAGTGTTTTTCACGTTTGCTGCCGCATTTACTG 636471 24 100.0 39 GCATTTACTG ........................ TAATGTATGCTGAAACTGGCGGTATTTCCGTGATGTTAG 636534 24 100.0 40 GTGATGTTAG ........................ CCATACTACGTTTTTCTCGGTATAAACAGGCTTCTTCTTT 636598 24 100.0 40 CTTCTTCTTT ........................ TTTTCGTAAACTATTAGATCTGTTTTATCTTCATCACACT 636662 24 100.0 41 TCATCACACT ........................ AGCGGAAGCCTAGAAGCGGATCTCAACAAAAAAGTGTTTGG 636727 24 100.0 48 AAGTGTTTGG ........................ CTCAAAAGTAATACTTTTTTTCTCCTAAACCAAAGTAATATCTTCTTT 636799 24 100.0 41 TATCTTCTTT ........................ AAAATGTCTTCTGGGGTCATAGCTTCGTGAGCGAGTACTAT 636864 24 100.0 38 CGAGTACTAT ........................ CCCATAGAAGTCACAGCAGGGTCACCTCATTCCTCCTC 636926 24 100.0 43 ATTCCTCCTC ........................ TTCCCTCAAACAGCTGTTTTAGGGAGTTGAGAGGGAACACCAG 636993 24 100.0 43 GGAACACCAG ........................ CAAGAATTGTACCGTTTCTCAGCCTATATGCAAATAATATCTT 637060 24 100.0 41 ATAATATCTT ........................ CAAAAATATACTCTGTCTTAGAGTTTAAAAATGTTTCTGTC 637125 24 100.0 41 TGTTTCTGTC ........................ AACCCAATATTTCATAATCATTGTTAGGTTCAATGTATCTA 637190 24 100.0 44 AATGTATCTA ........................ AAACCCTCTTTTAAGCTGAACATATTCACGATACTTTTGACTGC 637258 24 100.0 39 TTTTGACTGC ........................ TCTCCTCATTTCCATCAATAAGTCTTAACCAGTATCTAT 637321 24 100.0 43 CAGTATCTAT ........................ GAAGAATCATAAATGTAGTAGTTTTTCCAGTTCCTCTGTTAGA 637388 24 100.0 42 CTCTGTTAGA ........................ CGAGAAAGGGTTTTTGGGGATAGGGATAGGGGCTGCATTAAT 637454 24 100.0 38 CTGCATTAAT ........................ TCTTTGCTTAAGTTTCTGATATCCTCTAATATACTCCT 637516 24 100.0 39 ATATACTCCT ........................ ATGAAACTTCTGTAATGTCTACTGTTATTCCATTAGTTA 637579 24 100.0 39 CCATTAGTTA ........................ AAGGTTATTGAGATACCTACATTCAACGTACCCGCGTCA 637642 24 100.0 41 ACCCGCGTCA ........................ CTTAGAATGTACTTTTGAACCATAGGAGAATTGAAAATCAT 637707 24 91.7 41 TGAAAATCAT ......................GT GTCTTGTTTATTGTAAGCGACAATTTGTAGGGATTCACTCT 637772 24 100.0 GATTCACTCT ........................ AGGGCTCATC ========== ====== ====== ====== ========== ======================== 62 24 40 GTTAATCTACTATAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2942,762] Score: 0.18/0.18 # # Final direction: F [5.36,0 Confidence: HIGH] >NC_012590 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 992985 28 100.0 33 NNNNNNNNNN ............................ GTTGGGGATACGCCCACCGTGCTCACGGCTCAG 993046 28 100.0 33 NNNNNNNNNN ............................ CGTTACGCACAACTGCGCCTAGTGGGGCGAAAG 993107 28 100.0 33 NNNNNNNNNN ............................ GAATCGTAGTGTTGGCCTTGACCTGCGTGTCCT 993168 28 100.0 33 NNNNNNNNNN ............................ CTCATCGCGAGGTAATCAACCGCTCGAGATGTG 993229 28 100.0 33 NNNNNNNNNN ............................ CCGCTCGAGATGTGGCGAAAGCGTCATCCAACG 993290 28 100.0 33 NNNNNNNNNN ............................ GACAGTCGGCGGCACACTGAGCGAGAAGCGGAC 993351 28 100.0 33 NNNNNNNNNN ............................ CCGTACTATCCCATTGCTCAGCTCACCGGGCCG 993412 28 100.0 33 NNNNNNNNNN ............................ CTCTTGATACTGATTAGCGGATAGACCTACGGC 993473 28 100.0 33 NNNNNNNNNN ............................ GGCCCTAAAGGCGCAGTAGAACCGGGCGAAGTG 993534 28 100.0 33 NNNNNNNNNN ............................ CCCACCGCCATTAGGTCATTGCGTATCAATTGG 993595 28 100.0 33 NNNNNNNNNN ............................ CACGTTTCCCTCGCTGTCGAGTTGCCACATCTC 993656 28 100.0 33 NNNNNNNNNN ............................ CTCTGCTGATGCGATGGCCGCTCTTGATGAGGC 993717 28 100.0 33 NNNNNNNNNN ............................ CCCGTCCGGGTACGTATTAACTCTCGTGGTGGC 993778 28 100.0 33 NNNNNNNNNN ............................ GGCACTTCACGCGCTGTCCGATATCCCTGTCCG 993839 28 100.0 33 NNNNNNNNNN ............................ CCAGCATGTCGACGGGATAGTCGCCGGACGGTA 993900 28 100.0 33 NNNNNNNNNN ............................ CCTATGGGAATCTCGACGCCCATTAGAGACCGA 993961 28 100.0 33 NNNNNNNNNN ............................ GTCAGCGTCCTGGTCGATGGTGAAGCCTTCGTC 994022 28 100.0 33 NNNNNNNNNN ............................ CCAACTGTATGACGCAGTGGTAGAAGGAGTGTA 994083 28 100.0 33 NNNNNNNNNN ............................ CCACCTGGAGGAAACCAACTAATGGCAGGCGAA 994144 28 100.0 33 NNNNNNNNNN ............................ CCTACAGCCGCACAATCCGCGCAGCCCTCAAAA 994205 28 100.0 33 NNNNNNNNNN ............................ CATGGGTAACGGCTGGGGAAACCTCCGTAACTC 994266 28 100.0 33 NNNNNNNNNN ............................ CCCACTAGGGAGGGGCGCGCATTCCCCCAATCA 994327 28 100.0 33 NNNNNNNNNN ............................ CTACCGGCTCACCGCCCTAGACCGGAAATACCA 994388 28 100.0 33 NNNNNNNNNN ............................ CGACTCCGATACCGCGTGGCACGCCGCAAACCA 994449 28 100.0 33 NNNNNNNNNN ............................ CATGCTCCGCGTGACGGCGCTTGGCTCCCCGGA 994510 28 100.0 33 NNNNNNNNNN ............................ CTCCCAGAAGCCACCCACCAACACATCACCGTC 994571 28 100.0 33 NNNNNNNNNN ............................ CTCTCCGAGCTCGCCGGCATGCGCAAAGCGGAG 994632 28 100.0 33 NNNNNNNNNN ............................ CGGTTGACCTCCTTCCTGGCAGCGAGGTTGTGC 994693 28 100.0 33 NNNNNNNNNN ............................ GTGATGAATTCATATCCTTTCTGGCCTGAGTGC 994754 28 100.0 33 NNNNNNNNNN ............................ GTCTCTACCGACACTGTGCGCAATGATGTGAAA 994815 28 100.0 33 NNNNNNNNNN ............................ CACCAGGCAGAAGTAGACCGCCTTTGGGCTTCA 994876 28 100.0 33 NNNNNNNNNN ............................ CCTGGCGCTCGGTGTCGCCGGTGACGTTAAACG 994937 28 100.0 33 NNNNNNNNNN ............................ GGAGCAGGCCAAGAAGGAATACGACTCCCTATC 994998 28 100.0 33 NNNNNNNNNN ............................ CCACTAATGCCTAACTTTGCAATGCCCAACGTC 995059 28 100.0 33 NNNNNNNNNN ............................ GGGTATTGGTTCACTGGTTCGCGCTCTCGTTCA 995120 28 100.0 33 NNNNNNNNNN ............................ CCGCAAACTTTTAATTACGCACCCCGGTTACGC 995181 28 100.0 33 NNNNNNNNNN ............................ CTGTCCGGTTCGTATTTGATGATTGTTACCCAA 995242 28 100.0 33 NNNNNNNNNN ............................ CCCTAGTCGAAATGGTGGCCCGCACCATGGACA 995303 28 100.0 33 NNNNNNNNNN ............................ GTCGCGGGATGTGCGCCGCGAAGTGAACACACT 995364 28 100.0 33 NNNNNNNNNN ............................ CGAAGGCGCATGGCTGGCGGCCAAGGGCTTCAA 995425 28 100.0 33 NNNNNNNNNN ............................ GGCGAAATCCTCGACTGGATGCAAGACCACGGT 995486 28 100.0 33 NNNNNNNNNN ............................ CCTATTCGGCGGGTGCACTGCTGCCCGCGTCAG 995547 28 100.0 33 NNNNNNNNNN ............................ CCCGCCCCCGTGCCTGGTGAAATCCGCATCACC 995608 28 100.0 33 NNNNNNNNNN ............................ CCATATCGGGGATGGGAACCACCCCAGCGCTGA 995669 28 100.0 33 NNNNNNNNNN ............................ GTTCTGAAAATGATCATGCTGTAGCTGCATCGG 995730 28 100.0 33 NNNNNNNNNN ............................ CCGCCGGCCACTTTCCAGAATCAGGGTGCCGTA 995791 28 100.0 33 NNNNNNNNNN ............................ CGGGATAGGCTTACCGGCCTCGTCAAAATCCTG 995852 28 100.0 33 NNNNNNNNNN ............................ CAATCATGGCGTGGGGAAAATCAATCCTCACTA 995913 28 100.0 33 NNNNNNNNNN ............................ GGGGTACGGGTTCTGCTGGGTGCCTTGCGCGAT 995974 28 100.0 33 NNNNNNNNNN ............................ CCCCACCACGGCGGGATAGGCGCGGCCTCACCT 996035 28 100.0 33 NNNNNNNNNN ............................ CACGTCCAACCCGTTTATTGATTTCACTGACAA 996096 28 100.0 33 NNNNNNNNNN ............................ CCTCATTCAGGATGCGCTCACTACGGGAACGCT 996157 28 100.0 33 NNNNNNNNNN ............................ CACGAAAAGGATGACATGAACACCCCAAACCAG 996218 28 100.0 33 NNNNNNNNNN ............................ CGTCGCCGGATAGTCCGACCCCGTTTGGTGAGA 996279 28 100.0 33 NNNNNNNNNN ............................ CTCACCGGCACCAACGATAAAACCGGCGAGACA 996340 28 100.0 33 NNNNNNNNNN ............................ GAAATCGCAGGTCGTACCGGCTCGCCAAATCTG 996401 28 100.0 33 NNNNNNNNNN ............................ CTAGATTTGCTCAGTCAGCTTGACAGGGCGGGT 996462 28 100.0 33 NNNNNNNNNN ............................ CCACGCGCAGACCTCCGATGGTCTGCGGGGTAA 996523 28 100.0 33 NNNNNNNNNN ............................ CCACGATGCGCTCGGATGGTTCAAGGGCATCCA 996584 28 100.0 33 NNNNNNNNNN ............................ GACCACGAAGCGTTCTCGGGTGCTGCTTCTAGG 996645 28 100.0 33 NNNNNNNNNN ............................ GACCACCATTGTGCTAGGCGCTGGCTTTATTGG 996706 28 100.0 33 NNNNNNNNNN ............................ CCCCTGGTTCTCCGACTCACTGACCATCACCGA 996767 28 100.0 33 NNNNNNNNNN .....................G...... CAGGAGCGATAGTTGCTTCTGACCAGCTTGCTG 996828 28 100.0 33 NNNNNNNNNN ............................ CTCGTTGGAGAACCTGAGACCAGCGCACCGCTC 996889 28 100.0 33 NNNNNNNNNN ............................ GTCTCCACCCCGGAACTGGACGAGGTACGGGGC 996950 28 100.0 33 NNNNNNNNNN ............................ GCTTCATGTATGCCTCGAGCCGGGCGATGATGT 997011 28 100.0 33 NNNNNNNNNN ............................ CCTAGGCGTCTCGCAAGGCGACCTGGTAGGCAC 997072 28 100.0 33 NNNNNNNNNN ............................ GCGAAAGCCCTTGCCTAGTCCGAGGTCGTCAGT 997133 28 100.0 33 NNNNNNNNNN ............................ CTCGCTGACGCGCGCTTTGACATCTTTCGGGGA 997194 28 100.0 33 NNNNNNNNNN ............................ CGGCCCAAGCTTCGTCATCATGTACTGGCGGAG 997255 28 100.0 33 NNNNNNNNNN ............................ CGGGGTGGGACTGTCCGGCGACGTTTCACTAGC 997316 28 100.0 33 NNNNNNNNNN ............................ GTCCTAGCCAAAGCTGGCCTACTCGCTGATGAC 997377 28 100.0 33 NNNNNNNNNN ............................ CTGGATCCCAGGGGCCTATCGGTAAGACTGGCC 997438 28 100.0 33 NNNNNNNNNN ......T..................... CATTCCCAGTCGCTTAGCCTTCGCCCGGAAGTC 997499 28 100.0 33 NNNNNNNNNN ............................ CTGTCCAAAATGGGAGGAGAATTCTCTCAGCTG 997560 28 100.0 33 NNNNNNNNNN ............................ GTCGGAACGATGGGGACTGATACGAAACCAGCA 997621 28 100.0 33 NNNNNNNNNN ............................ CGCCCCGTCAACCACAAGCTCAAACGTCAACGT 997682 28 100.0 33 NNNNNNNNNN ............................ GTGAAGGTAAATCGTCGCGCACGCTGGGGTATC 997743 28 100.0 33 NNNNNNNNNN ............................ CCTGGCAGAGCATAATGACCTACCCCGCCCCGA 997804 28 100.0 33 NNNNNNNNNN ............................ GTACAGGCAGTATGCGGCGGCTACACGAGCGCC 997865 28 100.0 33 NNNNNNNNNN ............................ CCCAATCGGCAAAATCTCTCAACCAATCAATGG 997926 28 100.0 33 NNNNNNNNNN ............................ CACTCGCCGTGTTATCGCCCGCGACGTGCGGGA 997987 28 100.0 33 NNNNNNNNNN ............................ CTGGATTGCCGATAAAGCCAAGGGCATCTGGTC 998048 28 100.0 33 NNNNNNNNNN ............................ CCATTGGGGAGGAATCATGAACGATTTTGAGCG 998109 28 100.0 33 NNNNNNNNNN ............................ CCACAATGGGGCAAGCGGAAAGTGTTCAGTATC 998170 28 100.0 33 NNNNNNNNNN ............................ GTGAATACGGCCTTCGCGCCGTCCCATACCATC 998231 28 100.0 33 NNNNNNNNNN ............................ CGCCCTTGGTGACATTGGTGTACGCATCAAAGA 998292 28 100.0 33 NNNNNNNNNN ............................ CTTCACTCGGCCGATGTCGGCGGGGACCGTGAC 998353 28 100.0 33 NNNNNNNNNN ............................ CCAGGTCCGTCGGGAGGAACTTCTCGGGCTTCA 998414 28 100.0 33 NNNNNNNNNN ............................ CACCACCATCTTCACCTGGAAAGAGAAACGCAA 998475 28 100.0 33 NNNNNNNNNN ............................ CCAGCCCGAGTACTCCTGTGCAAACGTCTTCAT 998536 28 100.0 33 NNNNNNNNNN ............................ GCCTAACCGCCGCGGGGGTGGTCTAAATGACTG 998597 28 100.0 32 NNNNNNNNNN ............................ CCCCAACCTTCTGATCCGTAGAGAGAAGGTAA 998657 28 100.0 33 NNNNNNNNNN ............................ CAAGGAAAACATCCGCGCTGTCATTGGCAGGCT 998718 28 100.0 33 NNNNNNNNNN ............................ CCAACAATTGAAAGCCCTAGGCAACGGTGTCGT 998779 28 100.0 33 NNNNNNNNNN .......T.................... GAACGAGCACAGTACAGGGGGACATGGTGCGAA 998840 28 100.0 33 NNNNNNNNNN ...............A............ CTCCGGTATCCACTGGTCGGTGTATTTGGAGCG 998901 28 100.0 1 NNNNNNNNNN .....T..........TA..T....AT. NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 98 28 32 GTGCTCCCCGCGTAAGCGGGGATGAGCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [4,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-13.40,-12.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [53.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [89,207] Score: 0.18/0.18 # # Final direction: F [1.05,0.18 Confidence: HIGH] >NC_012622 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 698833 24 100.0 43 NNNNNNNNNN AGGG.GT.AT............A. AAATATGTGAAGACGAAGTAATTGCAAGGGTAATATACACTAA 698900 24 100.0 40 NNNNNNNNNN ......................A. CAATTGCGTCAATGAGTTTATTTAAATCGTCAGCAATTAA 698964 24 100.0 39 NNNNNNNNNN ........................ AAAATAACAAATTTCAAAGAAGGTAAAGTGAAAAGTGAC 699027 24 100.0 40 NNNNNNNNNN ........................ TATGAGTTGATAAGATTTTAAACTAAAACACTACAATAAT 699091 24 100.0 41 NNNNNNNNNN ........................ CGAAAATGAAATTGAATATCAACACTTAAATCCAGAGGATG 699156 24 100.0 40 NNNNNNNNNN ........................ GTTGTTTTAAATTCAAAGATAATGAACTTGTAGAAGTTAG 699220 24 100.0 40 NNNNNNNNNN ........................ CAAAACGAGTTGGCAATAAAACCATTATTAAGGTCGTTCC 699284 24 100.0 40 NNNNNNNNNN ........................ AAATGAAGAGGATGTGGGTAGTTTTTGCGAAAGACCTTGA 699348 24 100.0 42 NNNNNNNNNN ........................ AAAATTGATTGTATTGATAATTATTGTGAAGATGTTGTAGAA 699414 24 100.0 42 NNNNNNNNNN ........................ AGGTAAGAACACTTTCACTGAAATCTTAGCAGGAATTGTTGA 699480 24 100.0 41 NNNNNNNNNN ........................ TGTAAAGAATGTTGATGATGACTTTGGTATACCAGTTGACA 699545 24 100.0 39 NNNNNNNNNN ........................ TTAGTAATCGACATAACGAATACAACGGTAGGCAATATT 699608 24 100.0 41 NNNNNNNNNN ........................ AATATAGAGACTGGATTCACTATAATACCAACAGAATATAA 699673 24 100.0 41 NNNNNNNNNN ........................ GTAGGAGACATAATTGCTGGTGCCGGAGGTAAAGCATTAGC 699738 24 100.0 40 NNNNNNNNNN ........................ GAATAGTCAAGATCTAATAGTTCTAATATATCCCAACATA 699802 24 100.0 38 NNNNNNNNNN ........................ TTTCTATTTCACAGACCAATTTTGATGCCGTTCTCCTT 699864 24 100.0 41 NNNNNNNNNN ........................ CTAAAAACAAGATACAAGTGTTAAGTTATGTTGACATTAGA 699929 24 100.0 41 NNNNNNNNNN ........................ CTACTTCCTTCACTTCCTATCACTATTATAACATATGTACT 699994 24 100.0 43 NNNNNNNNNN ........................ TTACAGGATTTGTTGAAGTGTTAGCCAATGGACACAGTGCATT 700061 24 100.0 43 NNNNNNNNNN ........................ TAGAGCATGCATGAGAGAGACATTAAGAAAGAAATAACATGTT 700128 24 100.0 43 NNNNNNNNNN ........................ AAGTATATTTAGTGAATGGGTCAAATTATGTTAAATTACTAAG 700195 24 100.0 41 NNNNNNNNNN ........................ TAAATAAACATGCAAGTTAAAGATGAATTTGCTAATATTTT 700260 24 100.0 44 NNNNNNNNNN ........................ GGAGGAAAAGTACCGTCGTCTACTAAAACGAATCTATCAACATA 700328 24 100.0 43 NNNNNNNNNN ........................ CAAGATTTCTTGTGATTTTATTTCTTCTATAGACAGATATTAT 700395 24 100.0 42 NNNNNNNNNN ........................ AACAGACAAACTCATATACATAATATTTTGTATATGACAAAT 700461 24 100.0 42 NNNNNNNNNN ........................ GAGCGAATACGGTATAACTGGTCCTAACAGAGCCATTTACCA 700527 24 100.0 43 NNNNNNNNNN ........................ CTATTAGCTTTAAAATTTCTTCTCTTGCACCTTCAACAACTTT 700594 24 100.0 46 NNNNNNNNNN ........................ TTGAGATATGTAAAAATGAACAAATTGCCCGTGTTATTTATAAAGA 700664 24 100.0 40 NNNNNNNNNN ........................ AAATGTAATGCCATCTGTTGATAGTTTAGATGACATAATA 700728 24 100.0 1 NNNNNNNNNN ........................ NNNNNNNNNN ========== ====== ====== ====== ========== ======================== 30 24 41 CTTTCAATTCTATAGTAGATTAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.83%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis suggestion: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [289,274] Score: 0/0.18 # # Final direction: R [0,5.18 Confidence: HIGH] >NC_012623 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 1886795 24 100.0 40 GATGAGCCCT ........................ TGACATATACATTTAAATGTCAGGTTTTCATTTACACATG 1886859 24 100.0 39 TTTACACATG ........................ TACGTTCTCTATGTTGAGAATAAGTGTTAAGAGTTAAAA 1886922 24 100.0 41 AGAGTTAAAA ........................ TCGATTTTTTGCCAAGGGTCTTATGTTACATTCATGTTACA 1886987 24 100.0 40 TCATGTTACA ........................ TCTCATTTTTTGCACAATTTACGCAAAATGACAGATTAAT 1887051 24 100.0 40 ACAGATTAAT ........................ CTATCGGGAGTTTTAAATCATCGAATATGACCGCATAAAA 1887115 24 100.0 39 CCGCATAAAA ........................ CGCGATTAATGTATTGGGGTCTTCCCACGCAACCCCGAA 1887178 24 100.0 41 CAACCCCGAA ........................ TAAACAGTGTCTACTGAGACTGTAGCATTAGCACCGAATAC 1887243 24 100.0 40 CACCGAATAC ........................ GTACCTCACAGGGGTCACTCACTATTATTCCTGCCGACGA 1887307 24 100.0 41 CTGCCGACGA ........................ ACAGAAGTGAAACCGCTGATTTCGAATGAAAAGAAAGAATT 1887372 24 100.0 39 AGAAAGAATT ........................ TACAAATACCTCATAGACAATGTAACACGCAACCTAAGA 1887435 24 100.0 46 CAACCTAAGA ........................ AAGGTGACAAAGCACTAATTATACAACCAATGCAAAGATTGGAAGA 1887505 24 100.0 41 GATTGGAAGA ........................ AAAGAGTTTGCAATCACCAAACAAAATGATGAGGTTTGGTA 1887570 24 100.0 41 AGGTTTGGTA ........................ AACTGGATTTCCTTATCTAACCCTTCTGCGATAGCATTATT 1887635 24 100.0 42 TAGCATTATT ........................ AGCTCATATTTTTTCAGTTAAAGAATATACGACAAAACTTCA 1887701 24 100.0 40 CAAAACTTCA ........................ CCCGCTACACCTGGACCTAGACCTCCTGCCAAACCACCTA 1887765 24 100.0 39 AAACCACCTA ........................ TATATTTGTCAGATAACGAAAAATAAGAATGACAAAGTA 1887828 24 100.0 44 TGACAAAGTA ........................ TAAATTATTCACGCGATCCAGTGCAAATTTATAAATTAAGCACG 1887896 24 100.0 41 ATTAAGCACG ........................ AGGTGGCTAAATCTGGACTAAGATTCTTGGTTTCATCTGAT 1887961 24 100.0 38 TTCATCTGAT ........................ TTGATTGAGTGGTTTGGGTTTGACTTTGATTTTGTGTT 1888023 24 100.0 41 ATTTTGTGTT ........................ GGTGGAGGAGACACAATGTGCCGTGGAGGAGGTGGAGGAGG 1888088 24 100.0 42 GTGGAGGAGG ........................ AGCAGTTAAAATTGTTACTAAATCTAATTGTGTAACATTTTG 1888154 24 100.0 44 TAACATTTTG ........................ TCAGAAAATGACCTTGCACCTACCCATTTCGCAATTTCTTTAAA 1888222 24 100.0 41 TTTCTTTAAA ........................ AAAGGTCTAATAATCATAAAAAGTGAGATAAATCCTTCTAG 1888287 24 100.0 40 ATCCTTCTAG ........................ GAAGATCGAAAATTAAAGATAACTTTAAATTTGTCATAAT 1888351 24 100.0 40 TTGTCATAAT ........................ AAGGCTTTGGTTTGAAGGTAGCTAGAGCGTTGAACAGACT 1888415 24 100.0 42 TGAACAGACT ........................ ACAGTCTTAAATGTACTTTTCGATATCGTAAACTTCTATGAG 1888481 24 100.0 44 CTTCTATGAG ........................ AATTATGAATATGTTTAGTAACTAAAAACTTTAAATTAGGGTTT 1888549 24 100.0 37 ATTAGGGTTT ........................ GGTTGAGCTCCGCCCAATACCTCCCCTACCCTCCCTA 1888610 24 100.0 42 ACCCTCCCTA ........................ AGGAAAAAGTGAAAGAGAATCAGAATACCACAAACACGGCAA 1888676 24 100.0 40 AACACGGCAA ........................ CACTACAACAAATTCTATCAGCACTAACAACATCAGAGAT 1888740 24 100.0 43 CATCAGAGAT ........................ TAGTTGAAAGATTAGAAGAAGAGGACATATATAATATTTTAGA 1888807 24 100.0 40 ATATTTTAGA ........................ CAATGAACCCACTAGGAGGGTCACTCCCACCCTTCTAGTA 1888871 24 100.0 43 CCTTCTAGTA ........................ ACCAGATCTCAAATCCACGATAGCATTTCTAATAGAGAAATAT 1888938 24 100.0 40 AGAGAAATAT ........................ CATTTAGTGGTGGTTCTGCTGGATCTGCACCTCTTCCAGC 1889002 24 100.0 CTCTTCCAGC ........................ TGAGGGTTT ========== ====== ====== ====== ========== ======================== 35 24 40 CTTTCAATTCTATAGTAGATTAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.83%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [61.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [762,274] Score: 0.18/0.18 # # Final direction: R [0.18,4.77 Confidence: HIGH] >NC_012632 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 911635 25 100.0 40 AAACACAACA ......................... AACTATATCTAGGTGTTTCATGGACGGGTCACCTCATTTC 911700 25 100.0 37 ACCTCATTTC ......................... ATATTATTCAAAAAACTGATTACGTGAATGGATTTAT 911762 25 100.0 38 ATGGATTTAT ......................... TTAATTTCTTTGACTGGTAATTTCTGTTCTATTTCTTT 911825 25 100.0 37 CTATTTCTTT ......................... TTACCAACCCGTTTTTATTGACAATATAACGGTTGTA 911887 25 100.0 37 AACGGTTGTA ......................... TGATCAATCACTTGTATTCTTTTGTGTAAATTTCGTC 911949 25 100.0 39 AAATTTCGTC ......................... AAGAATGATAGAATACACTACCAGTAAACGTCACTAAAA 912013 25 100.0 35 GTCACTAAAA ......................... ACATAGAGGGCGTTCCTTGTCACTATTAACCATGT 912073 25 100.0 39 TTAACCATGT ......................... TAATAATGATATATTGTAGATATTATCGTTGCCCGGGGC 912137 25 100.0 38 TGCCCGGGGC ......................... ACTTTTGCGTTTTCATTTGTCTCTTCTTCTTCAAGTAG 912200 25 100.0 39 CTTCAAGTAG ......................... TTTGTTGGGTGTTCGTCGTTGTCCCGGCATTGAGGTTTA 912264 25 100.0 40 TTGAGGTTTA ......................... TAAATTTCTATGTTTCATTTCAAGCATTTTTCTCTACCCT 912329 25 100.0 38 TCTCTACCCT ......................... TATTTATTATAACACAAAGCACTATACACTTCAAAATT 912392 25 100.0 38 CTTCAAAATT ......................... AATTTGATCTATCGCGGGTATTAATTTGTTCATAACTG 912455 25 100.0 39 TTCATAACTG ......................... ACAATAAGATAGAAGGGTCTCTCGCGATAACTCTGTAGT 912519 25 100.0 36 ACTCTGTAGT ......................... TTAAACTTTTACTAACTTACTAACTTACAAACTTAC 912580 25 100.0 36 ACAAACTTAC ......................... TTCAGTAAGTAAGTTCGATTTTACTTATCGCCCATC 912641 25 100.0 39 ATCGCCCATC ......................... ATAGATATGATGAGATGGCAAACAATGTATACTAGGAAA 912705 25 100.0 TACTAGGAAA ......................... CTGACTGGTA ========== ====== ====== ====== ========== ========================= 18 25 37 GATTAATCCTAAAAGGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.00%AT] # Reference repeat match suggestion: F [matched GATTAATCCCAAAAGGAATTGAAAG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-2.40,-1.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [970,4750] Score: 0.18/0.18 # # Final direction: F [5.64,0.18 Confidence: HIGH] >NC_012622 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 706739 24 100.0 39 AAAACCCTCA ........................ GCAAACAATTGTAACTGCGATAACGGGTTTGGTGTCGTT 706802 24 100.0 38 TGGTGTCGTT ........................ CAATTATTATGAAAATTCTTTAAGCGAAACTGGAAAGC 706864 24 100.0 41 ACTGGAAAGC ........................ ACTTTCTGTACTCTGTTATTTATAATCTTATAACAAACGAT 706929 24 100.0 40 AACAAACGAT ........................ AACGAGGTCGTGGATAGAGCCAAACGAGGTCGTGCTGAGG 706993 24 100.0 40 CGTGCTGAGG ........................ TAAACGATGTTGCAACTAGGTACGCCAATAATGTTAAAAT 707057 24 100.0 42 ATGTTAAAAT ........................ ATACTTTTTCTAGACGTAAAACAACTCGAGACATTAATTCAA 707123 24 100.0 40 ATTAATTCAA ........................ AGAACTTTTGCAATGCCAGTCTTATGACTTCACTTCTGTA 707187 24 100.0 41 CACTTCTGTA ........................ TCATTATTGATTGTTATATACAATTTATTATTTGATACATA 707252 24 100.0 38 TTGATACATA ........................ AGTAGTACGTATAGCGTTGGGAAGAAGCTGAAGAACGA 707314 24 100.0 43 TGAAGAACGA ........................ ACCACCTATCCATATCGTAAACCCAATCGAAGCAGGAATAGGT 707381 24 100.0 41 AGGAATAGGT ........................ ACAGTTACAGAACACACTTATCCTTACCCAAACACAGCTAG 707446 24 100.0 41 ACACAGCTAG ........................ AACGTGCTAGAAAATTACTGAAGACTTGCCCTTACAAAACA 707511 24 100.0 39 TTACAAAACA ........................ GACTGTATTTCTTCCCATTCCAGATTATAGATGTCTTGT 707574 24 100.0 38 GATGTCTTGT ........................ AGTAGTCCCTCATCTCCAAGCTCACCCGGTCTAGGTGG 707636 24 100.0 38 GTCTAGGTGG ........................ AAGGCAAAAGAATACCTAAGACAGTTAAAAGAAGGAAA 707698 24 100.0 40 AAGAAGGAAA ........................ TTTATATCCACTTTTGCCATTTTGCCAATCTTTATTGGCT 707762 24 100.0 39 TTTATTGGCT ........................ TTACATATCATGACGTGGTTTTCTTTTGCCTCGACTATT 707825 24 100.0 41 CTCGACTATT ........................ AACAAACTCTGATTTCTAAATCGTTCCTCAAACTCTGATAT 707890 24 100.0 44 ACTCTGATAT ........................ ATTTTCATATTTTTATTTACATTTTTTGTCTCTCCAGCTATATA 707958 24 100.0 41 CAGCTATATA ........................ GTAGTATCCTTTCCTTCTAATCGTAGCAACTACACTGGCTC 708023 24 95.8 42 ACACTGGCTC .........A.............. TTTTTCTCAAGTGTTTTTATTCTTTTATTCATAATTATTTTG 708089 24 100.0 37 AATTATTTTG ........................ TTTGCCATGCTAAAAGTACAGGTGTCTCAACATATTG 708150 24 100.0 41 CAACATATTG ........................ ACTGTCCAAAAAGGTATTCAAAAAAGTGATGTAACAATTTA 708215 24 100.0 38 TAACAATTTA ........................ ACATATGTTATTAATATTGTATCACTTATAGCTCTAAA 708277 24 100.0 40 TAGCTCTAAA ........................ CTTAGGTATGCCACTTTTAAGATAGCATTAGCTTTAGTGA 708341 24 100.0 42 GCTTTAGTGA ........................ TCTTCAGTTTACCGATATCGGTCAGAGTTTTTATTAACGCCT 708407 24 100.0 ATTAACGCCT ........................ AGGGCTCATC ========== ====== ====== ====== ========== ======================== 27 24 40 GCTAATCTACTATAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.83%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [68.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [354,762] Score: 0.18/0.18 # # Final direction: F [5.18,0.18 Confidence: HIGH] >NC_012623 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 1893082 24 100.0 39 AAAACCCTCA ........................ TTTCCGATATGAATTGGATTATTCCATAGAACGTCTGGA 1893145 24 100.0 40 AACGTCTGGA ........................ AACCCTTGCCCACTTACTGAATATAACGTCTTTGAGCCTT 1893209 24 100.0 41 TTTGAGCCTT ........................ CGTCTTTTCTGAGTAGCGTAGGATGTTCTTTTTTTATCCAT 1893274 24 100.0 39 TTTTATCCAT ........................ ATAAGAAAAAGAGAAATAATAATTCATAAAAAATTCCAA 1893337 24 100.0 42 AAAATTCCAA ........................ TTATACAAAAATTGAATGGATAGAAAAAATTATACCGGTTTT 1893403 24 100.0 40 TACCGGTTTT ........................ GTTGATGACTTTATTCCAAGAAATCCATTATTTAGACCAG 1893467 24 100.0 41 TTTAGACCAG ........................ GCTTTATTTCCTTATTATTTTCTTTGGTTGAAACACTTTGA 1893532 24 100.0 41 AACACTTTGA ........................ AAAATAATGTATGAAATATTGTATTTTGTTATAATATCTTT 1893597 24 100.0 41 TAATATCTTT ........................ AAAATAATGTATGAAATATTGTATTTTGTTATAATATCTTT 1893662 24 100.0 41 TAATATCTTT ........................ GCATTGAAACCGCGGCCCGAATCCACGCCTGTGGAGACAGC 1893727 24 100.0 39 TGGAGACAGC ........................ AAAATAGGTTTTTTTACGCGATTTCACCGTTCGTGCTGA 1893790 24 100.0 41 TTCGTGCTGA ........................ TTCTAAAAATCTAACATATAAATTTTCTATATTATATCTCT 1893855 24 100.0 43 TTATATCTCT ........................ CTTCACTGATGTAATCTATGCACTCCTCCTTCATTTCATCAAC 1893922 24 100.0 40 TTTCATCAAC ........................ TAAACGGAGTTATACGTGTTCTGTATTGCGTTATTCGCAG 1893986 24 100.0 40 TTATTCGCAG ........................ AGAGTGCCAGGCTTTAGGCTGGGACAGTCAAGCGTAGGAA 1894050 24 100.0 39 AGCGTAGGAA ........................ CGGTAAGTGAAAGAGAATGGTCTACTGTCGAACCAGAGT 1894113 24 100.0 41 GAACCAGAGT ........................ TTCTTTTATTGCTTGCCTTATTAATTGACTTAATTGTTCAT 1894178 24 100.0 41 AATTGTTCAT ........................ AAATCATTGCTGACCCTAAATGTATCATTGGGGGATGTCCT 1894243 24 100.0 45 GGGATGTCCT ........................ ATATAATTACTATTGATGATATTAAAAAAAAATAAAATTCTTTTT 1894312 24 100.0 43 AATTCTTTTT ........................ TTTCCCTATCATTTTTAGGCTCATAAGTAGTTAACATTGCTAA 1894379 24 100.0 40 ACATTGCTAA ........................ TATGTTTTTCTAATTCTGTACGGTTATCTGCCGAATTTAT 1894443 24 100.0 42 CCGAATTTAT ........................ TCTTTCGTGGCGTGTTGTCTTCTTGAAGTAAATCGAATTTAT 1894509 24 100.0 40 TCGAATTTAT ........................ TCCAAACGCCTTGAGGATGTTCTTTTAAAAAATCTAGGAC 1894573 24 100.0 42 AATCTAGGAC ........................ TTTCTGCGGTTTCCGCCGTTTTTCGCTGCACACTTTCCTCTA 1894639 24 100.0 40 CTTTCCTCTA ........................ GCAATCAAGAGATTTAATACTTCAACATCGCAATCACAGA 1894703 24 100.0 37 CAATCACAGA ........................ TTTTTACTCCCTAGTATAGTGTATGTCTGATATAATA 1894764 24 100.0 43 TGATATAATA ........................ TTATTATATGTTATGATATTATAGCCAGCTTCTTTCAATAGCT 1894831 24 100.0 42 TTCAATAGCT ........................ GTATACTTTATCAATTCTTCAAGTGTTAGACAACCACGATTT 1894897 24 100.0 40 ACCACGATTT ........................ CAAGATTGTAAGGGAAGGGTTGACCGGGTAAAGTCACTGC 1894961 24 100.0 42 AAGTCACTGC ........................ CAACCCAATTCCTCAGTAGGTGCTAGCTCTAGCGTAAACTTG 1895027 24 100.0 39 CGTAAACTTG ........................ ATAAACCATTCGTTACAAATAACACAAAACAAGGTCTCT 1895090 24 100.0 39 CAAGGTCTCT ........................ ATTTCTTTTGAGTCATATATTTTTATTTTATTTTCTTCA 1895153 24 100.0 41 ATTTTCTTCA ........................ TAAGGAGTTTCCATATTGCAATCCTTAGGAGTTCACTTACC 1895218 24 100.0 39 TTCACTTACC ........................ AAATCTATTCGGAATAATTTATGATTTTAGTGAAATTAT 1895281 24 100.0 41 GTGAAATTAT ........................ TCTATAAACACTCTTGGTAATTTTACATAAAGATGCTCCGA 1895346 24 100.0 40 GATGCTCCGA ........................ TCTTCCGTCTTCGTAACAATTTTCTCTGTGACGCTCTCAA 1895410 24 100.0 36 ACGCTCTCAA ........................ TCCTTAACGTAATAAGGAGTCTGATCTCTCATACCC 1895470 24 100.0 40 TCTCATACCC ........................ GTCGTGTTCTACAACTCTGCAGGAGGGACAATTTACATAC 1895534 24 100.0 39 ATTTACATAC ........................ CAAAAGCCCTTTTTCTTTCCCCGCCTATGTTCTTCTTCG 1895597 24 100.0 39 TTCTTCTTCG ........................ TTCCCGTGGTCGCAGATAGGCTACATAGGGATAAGAGGC 1895660 24 100.0 41 GATAAGAGGC ........................ TTTAACTTGTCTCTCACTTATGTTTAAAACTTTTGCAATTT 1895725 24 100.0 43 TTTGCAATTT ........................ CTCCGAGGGTAAATATCAACAAGCCCTGCAATTAGCCCAACAG 1895792 24 100.0 44 AGCCCAACAG ........................ TAATTGGAACAAGCGAGGGACATTTACCTGTGCCAAGTTTTCTT 1895860 24 100.0 38 AAGTTTTCTT ........................ GTTTTGGCAAACATATGTTTGACCAAAAATGGTGGAAA 1895922 24 100.0 39 ATGGTGGAAA ........................ AACTGGTTAGCGAAAAAGGTTTAAATACCAGTTTTGGCA 1895985 24 100.0 43 AGTTTTGGCA ........................ AGAACTGCTTTTTCTTTTTTACCTAACCTAACTTTTTGACTCA 1896052 24 100.0 44 TTTTGACTCA ........................ TTCTCGTTTTCCCTAATTTGATATAATGTCATAAAAAGATCCGT 1896120 24 100.0 42 AAAGATCCGT ........................ TTGTTCTCACTCTCGCATACAACTTATAATATTCTGTGTGCT 1896186 24 100.0 40 TCTGTGTGCT ........................ GAAATATCAGCGGAATTACCCCCACCACCGCGTCATAATA 1896250 24 100.0 39 CGTCATAATA ........................ AGAGTCCGAGAGAGACTATTCATTTGACGACAATGTGAG 1896313 24 100.0 39 ACAATGTGAG ........................ AAATTATATTTGGCTCTTGATGATTTAACTATGGCATTA 1896376 24 100.0 39 TATGGCATTA ........................ AAATTATATTTGGCTCTTGATGATTTAACTATGGCATTA 1896439 24 100.0 40 TATGGCATTA ........................ ATATTGGCTGACCTAGTACTCCTAAATTTCAATATTCCAA 1896503 24 100.0 38 AATATTCCAA ........................ GAGGAAGGATTAATTTCAGCACGAATTTCTATTAATCC 1896565 24 100.0 41 CTATTAATCC ........................ CCTGCTTAGGCTGCACATTTTCTTCCAGAAGGTCGAATTCA 1896630 24 100.0 43 GTCGAATTCA ........................ TGAGAGGTCAGAGAAGTAAAAATCTATAACCGTGAAATTTTAG 1896697 24 100.0 46 GAAATTTTAG ........................ TTTCCACTATGGTCTTACACAAACCTTGCCAACATGACATTTGACC 1896767 24 100.0 40 ACATTTGACC ........................ CAAAAAACTCTACGATTTTTTCAAGATATTCTTTGTACTG 1896831 24 100.0 38 CTTTGTACTG ........................ ATAACAACACTCCAATTTACAAAAATAATCTTTATAAT 1896893 24 100.0 45 TCTTTATAAT ........................ TAGTCCAAGCGGAAGCTTAGAGGCTGACCTGAATAAAAAGGTATT 1896962 24 100.0 40 AAAAGGTATT ........................ TTATGCCTTGGATCATAAGATATATATTTTGTATCACTAT 1897026 24 100.0 43 GTATCACTAT ........................ GTTAGCATTATACGAATGTAGGAAGTTTAAAGATCAAGTCTTA 1897093 24 100.0 40 TCAAGTCTTA ........................ TAGACTCAAGAACTGGTAATCCAAAGCCTTCAGTTCCAGA 1897157 24 100.0 39 CAGTTCCAGA ........................ GTCACTTTTCACTTTACCTTCTTTGAAATTTGTTATTTT 1897220 24 100.0 40 TTGTTATTTT ........................ TTAATTGCTGACGATTTAAATAAACTCATTGACGCAATTG 1897284 24 95.8 GACGCAATTG .T...................... TTAGTGTATATTACCCTTGCAATTACTTCGTCTTCACATATTTGT ========== ====== ====== ====== ========== ======================== 66 24 40 GCTAATCTACTATAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.83%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [354,3124] Score: 0.18/0.18 # # Final direction: F [4.91,0.18 Confidence: HIGH] >NC_012632 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 912837 25 100.0 37 TATAGCCCAG ......................... ACAATACCATGTGCAGAATCAATAAACAATATGCTGT 912899 25 100.0 38 AATATGCTGT ......................... ACTTGTATATCAGATATCATGTCTACTAACGGCAAATT 912962 25 100.0 37 ACGGCAAATT ......................... TATCATCATTCTCCTTGATAAACCAGTCTCACTTTCT 913024 25 100.0 40 CTCACTTTCT ......................... AGTTATTTCGACGTGATTTAACGCACAGTAAGATTTATAA 913089 25 100.0 38 AGATTTATAA ......................... CTTGTATGCGCACTTACGAAAAGCCAATAATACTCAAA 913152 25 100.0 36 AATACTCAAA ......................... TCAAAATATATATCGATGATTTCTTCAAGATCACTT 913213 25 100.0 38 AAGATCACTT ......................... ATAATATTCTCTCTACTATTTCTTCTTTCAACTATTCA 913276 25 100.0 37 CAACTATTCA ......................... CTAAATATTTCGTGTTTATATCAAATGCATATACTTT 913338 25 100.0 39 CATATACTTT ......................... TTATATGTAGTGACGGTAAGTAGTAGCATCTATAACTCT 913402 25 100.0 38 CTATAACTCT ......................... GATTACTCTTCACAGATAAACATTCTTTAGGTAATTCT 913465 25 100.0 39 AGGTAATTCT ......................... TTTCGTTATCGTTCACGGAATTTATCAATGCAGTTAATT 913529 25 100.0 38 GCAGTTAATT ......................... TATAAGAACCTAAAAGAATTAACTAAGAGTGTTGACGG 913592 25 100.0 38 GTGTTGACGG ......................... TTCATTTCCGGCTCACCCTAGCCAAATACTCTTTGAAT 913655 25 100.0 38 CTCTTTGAAT ......................... GATATCCATTCCTCAGCACTCTTAAATCCGCTGAAATT 913718 25 100.0 39 CGCTGAAATT ......................... TAGAATCTAGCAGTACTATGACCCATATAACCATATACA 913782 25 100.0 38 ACCATATACA ......................... CTTGTTAGTATATCTATTTTCATATTTATACACCCGAA 913845 25 100.0 35 TACACCCGAA ......................... ATTAATTCTTTTACTGTATAGAAATATCTCATTTT 913905 25 100.0 35 ATCTCATTTT ......................... TCCGTTTCTAACTTATTAAAGTATTCATATAATGC 913965 25 100.0 36 CATATAATGC ......................... GTATTAAGTCATCAGAATATCCTTCTAATGATAGAG 914026 25 100.0 45 AATGATAGAG ......................... GCTATTAACATTATTAAGTTATAGACATTTTGTCCATATTCTACG 914096 25 100.0 36 ATATTCTACG ......................... ATTGAAAAGACTTTACGAAGTATATACAAGTGCTCA 914157 25 100.0 36 CAAGTGCTCA ......................... AAGTACACTTTATTAGCATTTTCTGGCAAACGATTA 914218 25 100.0 38 CAAACGATTA ......................... TGATTCTCATCTATCTCCTCCTCCAATTCCGCGAGGAC 914281 25 100.0 37 CCGCGAGGAC ......................... TTATTAATAATTTTTCGGGTGTTTTCATGTTTGTGCC 914343 25 100.0 38 TGTTTGTGCC ......................... AAAACTAATTGTATATTAGCAGGGTCACTTTGCACTCT 914406 25 100.0 42 TTTGCACTCT ......................... GTATGCTATGCAACAGTATTTTAATCTTATTTCTCGGATCCT 914473 25 100.0 39 CTCGGATCCT ......................... CTATATATTCGAGAAACAGGAATTTTCCCTGACTTATTT 914537 25 100.0 37 TGACTTATTT ......................... TATTAAAATACTTATTAGCAATCATTGCTGCACGTAC 914599 25 100.0 41 CTGCACGTAC ......................... TTTAAATTCCTTTTAACATCACATAATCTTTATTTCATATC 914665 25 100.0 39 ATTTCATATC ......................... ATTAATACAATTAAGCTCCGTCTTTGCTAGACTCTTTTA 914729 25 100.0 41 GACTCTTTTA ......................... CTAATGAAACATAAGAGCGAAAAGAAGTTTAGTAGAGATTC 914795 25 100.0 GTAGAGATTC ......................... GCTTGTTTCT ========== ====== ====== ====== ========== ========================= 32 25 38 GATTAATCCTAAAAGGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.00%AT] # Reference repeat match suggestion: F [matched GATTAATCCCAAAAGGAATTGAAAG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-2.40,-1.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [2172,2660] Score: 0/0.18 # # Final direction: F [5.37,0.27 Confidence: HIGH] >NC_012632 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 914929 25 100.0 37 GTTATTCTTG ......................... TTTTACAATCAGATATATTGATAGTTGATTTCTGCTA 914991 25 100.0 38 ATTTCTGCTA ......................... TAATTTCATTTTCATTATTTCTCAACTCCCTTAATTAC 915054 25 100.0 39 CCTTAATTAC ......................... CTAACTAAAACACAACTAAATATAACACTATATAACACA 915118 25 100.0 38 ATATAACACA ......................... ATACTCTGTTCCTTGCTCCATCTTTAGTAATTTGCTAA 915181 25 100.0 35 AATTTGCTAA ......................... ACCTTACTTTCTCTTCTCCCTTTAGATTAAGTTTT 915241 25 100.0 40 ATTAAGTTTT ......................... TATAAATAAGCGGTAAAAATGAAGAAAAAAACGTTTCTAT 915306 25 100.0 41 ACGTTTCTAT ......................... AGATATTATCCTTATATTCACCTACTTTTTGCAGATATTTC 915372 25 100.0 39 CAGATATTTC ......................... TAGAATATCAAGCAGATAAATTAGTAGTACAAGATGTGA 915436 25 100.0 37 CAAGATGTGA ......................... TCTATTAATATTGTATGCAACATTATTTTAACTTTGC 915498 25 100.0 40 TTAACTTTGC ......................... TAGACAGGTCAGTATAGGTCTTACCATCTAATAAAGCAAG 915563 25 100.0 42 ATAAAGCAAG ......................... AAATTACTATCTTGAATAGAGATATTAGCGTTGTCTATTGCT 915630 25 100.0 35 GTCTATTGCT ......................... CTATATATGGGAAGGCTTATGATCACCTAGTAGAA 915690 25 100.0 40 CCTAGTAGAA ......................... GATGAATATGAAGAATTTGCTACTATAATAGTGAAACTCC 915755 25 100.0 39 GTGAAACTCC ......................... CTCATCACCCCATGTTTCTTCAAATCCACCCAGATTCTC 915819 25 100.0 35 CCAGATTCTC ......................... AAGAATCCCCAAGGATAAACACTAGCATATCGACC 915879 25 100.0 38 CATATCGACC ......................... TTCCAAATACACGTTTATTCAATATGATATCCAGCAAC 915942 25 100.0 41 ATCCAGCAAC ......................... TTATTATTTACAGTTATTCTTATCTTTGCCATCCTCACCAC 916008 25 100.0 38 TCCTCACCAC ......................... TCAAAATGAGTAATTTTTCTTCATGCAACATAATTCAC 916071 25 100.0 38 CATAATTCAC ......................... TCTTTCACATACGTTTCTATACGCTTCTTCTTTCCATC 916134 25 100.0 TCTTTCCATC ......................... AACATGCTCA ========== ====== ====== ====== ========== ========================= 20 25 38 GATTAATCCTAAAAGGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.00%AT] # Reference repeat match suggestion: F [matched GATTAATCCCAAAAGGAATTGAAAG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-2.40,-1.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [66.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [4264,1321] Score: 0.18/0.18 # # Final direction: F [5.82,0 Confidence: HIGH] >NC_012632 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 935642 24 95.8 38 ATATAGTATA ...............A........ TATAGATTCTAAGCTCATAGTACTAAGCGGCAGACTTC 935704 24 95.8 39 GGCAGACTTC ............C........... AGTGTCTTTTGATAAAGTGTAACTTTCTCTTAATAGAAA 935767 24 100.0 40 TTAATAGAAA ........................ CGTCTGAGGACGGATCCTACGGCGAAGCAGTACTGGAGTT 935831 24 100.0 39 TACTGGAGTT ........................ CGGTTTCGGTGGATTTATATATAGCCACGAGAAGGATGA 935894 24 100.0 41 AGAAGGATGA ........................ GTAAACACGACCTCCACTACTACACTATAAATTACATTGCT 935959 24 100.0 40 TTACATTGCT ........................ AGTAAGCAGTGGTTATAAAGATACTGATGAACTAATAGGG 936023 24 100.0 38 ACTAATAGGG ........................ TTGATATCGATTATGTTATTTATATTAATGTTAAAAAG 936085 24 100.0 39 TGTTAAAAAG ........................ CTTGTTTATTATTGAGTTGTTTCAAGATGTTGGTATCAT 936148 24 100.0 39 TTGGTATCAT ........................ TTTGCATATCTACTGACGTCAGCGATGTATCTAAGGTTA 936211 24 100.0 38 TCTAAGGTTA ........................ CTTACACTCAACTTAAAAGAAGAAGAGATAATAGCAAA 936273 24 100.0 42 TAATAGCAAA ........................ CCGAGGCATCATTGATATCTAGGGCGGGCGTTAAATTCGTAG 936339 24 100.0 41 AAATTCGTAG ........................ AGGATTATCTCTTCGTCTACGGTGCTCGCGTCCACGATCTT 936404 24 100.0 41 CCACGATCTT ........................ ACGCGGATTAATAGATTCTGCATATGCGACGTTAGAACAAG 936469 24 100.0 39 TTAGAACAAG ........................ CTTTGTTCTCTCAGAAGCTGTTACGTTACTTCTTAGTAT 936532 24 100.0 39 TTCTTAGTAT ........................ ATTATAAAAAAGATAAACGATTAAGCATTCAATTTGAAG 936595 24 100.0 39 CAATTTGAAG ........................ AAATAAATTGAATTTTGACTTACAAGTTTTTCCTCTTCT 936658 24 100.0 40 TTCCTCTTCT ........................ CATCAGATTTAGCTAATATTAACATTCTTCTAGGGGGATA 936722 24 100.0 39 TAGGGGGATA ........................ GCCGGATTTTTTTCATATTTCAAGAAAAAAGAATGCGAT 936785 24 100.0 37 AGAATGCGAT ........................ AATTTTATATCGAATCTGATTTTTATTTCAATAATTT 936846 24 100.0 38 TCAATAATTT ........................ CCCGACACTTGAATAATAAGGACTAAATAATTAATTAA 936908 24 100.0 38 AATTAATTAA ........................ TGAGGAAGAATGATAACACTTTTTGAAGTGTTTCTTAT 936970 24 100.0 39 TGTTTCTTAT ........................ AATTTCTTGACCGCCGTATGTGACTTTTTCGGGTTCTAT 937033 24 100.0 41 CGGGTTCTAT ........................ GCAAAACGATAAACATAATAGTTCCTTCCGGAGCTAGCGGT 937098 24 100.0 38 AGCTAGCGGT ........................ CGCCTTCTGCACGAGCGTTGGAGCGAACAAACCGTAGA 937160 24 100.0 39 AAACCGTAGA ........................ TTGTATCACGAACTGTGGGTTGCCACCCTGAACGATTAT 937223 24 100.0 41 GAACGATTAT ........................ AGAATCACCCCGAGCTATTAAAGCCAAACGGCGAAATCGCA 937288 24 100.0 39 CGAAATCGCA ........................ GGAAACTCCCACTTCAAGCGTAAACGTTTGCCAGGGCTT 937351 24 100.0 40 GCCAGGGCTT ........................ TACTTTATTTGTGATAGATGAGGCTCATCATCATTTTCAA 937415 24 100.0 39 TCATTTTCAA ........................ ATCCTTATATAATGATATAATAACGCTAGGGTGAGATGA 937478 24 100.0 39 GGTGAGATGA ........................ CTTTAATATTGCGGCAAGTGCTCCAGCTGGTTCTGTTGT 937541 24 100.0 38 GTTCTGTTGT ........................ GAACTAGAGGACTTCTTCCTAAGTGGTCTCGATGAAAC 937603 24 100.0 40 TCGATGAAAC ........................ AATAATAAACATTCTAGTGATGATATCATTTTACCAATGG 937667 24 100.0 39 TTACCAATGG ........................ AATTACTACTCAAGATATAATAGACTTTCTGACTACAAT 937730 24 100.0 39 TGACTACAAT ........................ TCATGAAATTTATTATTAACAACAAGATATAATTATTTA 937793 24 100.0 40 TAATTATTTA ........................ TAGGGTTCTTCTTCAATTGGGTGAGGGAAGAGAGGATATG 937857 24 100.0 41 AGAGGATATG ........................ ATAGAGCAAACGCTAGATTGTCGAGAAAGATGTTTATCGTG 937922 24 100.0 37 GTTTATCGTG ........................ CCTCAACTGTTTGAATATCCATAATTAAGTATAATGA 937983 24 100.0 40 AGTATAATGA ........................ ATACTAACTATGGGGCAAACCACCAAGTCTTGCAAGTAAT 938047 24 100.0 39 TGCAAGTAAT ........................ TTCAACATTCCCAATTCTCATAAGTTCATTATAGTTTCC 938110 24 100.0 38 TATAGTTTCC ........................ TTGATTTTGGGTTGCGGACATGGGATGACCCCGATAAA 938172 24 100.0 41 CCCCGATAAA ........................ CGGCATCCCTGAAACATGCATACTGTATTGTTGAAAGATAA 938237 24 100.0 42 TGAAAGATAA ........................ ACAAAAGAAAGAAGAGGAATTCAGTTTAGGGCTTATAGGTTT 938303 24 100.0 39 TTATAGGTTT ........................ CCACTTCTTGATCCTGAAAACGATACGCATCACTGTAAA 938366 24 100.0 41 TCACTGTAAA ........................ AATATGTGGTTGAAACAGTTTCGTCGTTCTTCAACGAAGAG 938431 24 100.0 38 CAACGAAGAG ........................ AACAAGACCTCGACGTCCCGTGAGTCCAGGAAGAGGAT 938493 24 100.0 38 GGAAGAGGAT ........................ ATTAATACTCAAGATATAATAGATTTCTTGACTAAAAT 938555 24 100.0 39 TGACTAAAAT ........................ GAAACTTTAAAAGTCTGCCAGACAAATGTTTAAATATAG 938618 24 100.0 41 TTAAATATAG ........................ TTAGAGACAAATGTCACTTCCATAGACTTATAATAGTTTAA 938683 24 100.0 37 AATAGTTTAA ........................ AAAACTTCTATTGAATTTTACTAGATGGTCTTTTTAT 938744 24 100.0 37 GTCTTTTTAT ........................ TTGTCAATAATTTAGTAGTACCAGTAGCTAAAAGATA 938805 24 100.0 41 CTAAAAGATA ........................ AATTAATAAATTATTATTCAGCAGGTCAAAGAATAAGGATT 938870 24 100.0 39 AATAAGGATT ........................ ACCTGCAGAACTCATTATCCATCATGTAAGAAGTACGAG 938933 24 100.0 41 GAAGTACGAG ........................ ACGCCAATTGACCACAGTGGTCTACTTATTGATGAAGTATT 938998 24 100.0 40 ATGAAGTATT ........................ TCTTTTTTCTTCGTTTCTGTTTCACTTCTATATTTAATCC 939062 24 100.0 38 TATTTAATCC ........................ CCTTACACGTTCAAACCTAATCATCTCGTTACATTACT 939124 24 100.0 39 TTACATTACT ........................ CATATAATGTTGTTCCTAGTAGATACCCTAATATAACAC 939187 24 100.0 40 AATATAACAC ........................ ATAAGGTACTTTACATAGATATAGAAGTTAATAATATAGA 939251 24 100.0 39 ATAATATAGA ........................ ATTGTAGTCACTACTTTAGCACCGCTAAGAATATATTTA 939314 24 100.0 41 AATATATTTA ........................ GAGGAAGAGATGGAGTCTGGTAAGGAGGTTTTCGTTATTTA 939379 24 100.0 38 TCGTTATTTA ........................ AGAAAAGTATTCTATCTTTATCCGGATAATACAGAGTA 939441 24 100.0 39 ATACAGAGTA ........................ CTTTTCTACACAAGAGAGCCGAGAGAAATAGAATTCATT 939504 24 100.0 38 AGAATTCATT ........................ TAACCACTTAACTCCCCAGTTAAGTGGTTGGAGACTAG 939566 24 100.0 40 TGGAGACTAG ........................ ACTTCGCTCCGCTTTGGGGCGACGAGGACGAGTTCTACAG 939630 24 100.0 40 AGTTCTACAG ........................ TATTAGGAAAGTAAACATCTTCGTTTCCTGATATGATTAC 939694 24 100.0 42 ATATGATTAC ........................ AGGGGATGTAGGAGGAGGATTTGCGAATGATTTTAGAAGAAT 939760 24 100.0 39 TTAGAAGAAT ........................ AAATATTTATAAGGAACAAAAAACATAGAGAAGTACAGT 939823 24 100.0 40 GAAGTACAGT ........................ TTAAATATGATTATGAGGGAACAATAAAGATAATTTATTA 939887 24 100.0 39 TAATTTATTA ........................ ATATAATACCATCTATAAATAAAGATAAGAAACTTGTGA 939950 24 100.0 37 AAACTTGTGA ........................ CCGCAAATACCTTACTTCATCACTATTGTAAACCCAC 940011 24 100.0 39 GTAAACCCAC ........................ TTAAGTATATTAAGTATCAAAGGGGAAGAAAAAGTAAGG 940074 24 100.0 41 AAAAGTAAGG ........................ GGTAAACAGTGGTTATAAAGATACTGATGAATTAATAGGAA 940139 24 100.0 40 TTAATAGGAA ........................ CCCCTTCTTAATTTTCTTATTAAAAATGATATTGAATACG 940203 24 100.0 38 ATTGAATACG ........................ TTTATATCACAAAGATGTATTGAGGGAGTTCCAAAGGA 940265 24 100.0 38 TTCCAAAGGA ........................ TGGAAAGAAGTAACCTAGGAAATGTGTACATTACAATA 940327 24 100.0 38 CATTACAATA ........................ TGGTGTCCCCAATAACACTTGCTTACCGAAGATAAAGG 940389 24 100.0 38 AAGATAAAGG ........................ ACTAGAGCTTTACTGTTGCAAGAAGCACTACAAAATTT 940451 24 100.0 41 TACAAAATTT ........................ CCATTTGCGTCTAGTAATGTAATAATTCGTGGGTTAATTCA 940516 24 100.0 39 GGTTAATTCA ........................ ATCTACAATTAAGGACAAATCACGAACGAATAATTGTAA 940579 24 100.0 42 ATAATTGTAA ........................ TAAATTTATCGCCAAAATCCTCCACGTTGAATATATAGAGAA 940645 24 100.0 38 ATATAGAGAA ........................ TCCCTCACAGATCTCTATTGAGAATTTCCAACCTTTAG 940707 24 100.0 40 CAACCTTTAG ........................ GTCGTGAAGGTCGAGAAGGGCAAAAACGTCGTCGAGGTGG 940771 24 100.0 38 GTCGAGGTGG ........................ TTTATACGCCAATACGCCCCACTCCTTCTAATGTCGTG 940833 24 100.0 40 TAATGTCGTG ........................ AAAGATAACCAAGCCCTAGTTAATGAAAACGGAAAAATCA 940897 24 100.0 36 GGAAAAATCA ........................ ATTCATTAAAAATGCACCTACATATCATGATCCAGG 940957 24 100.0 40 ATGATCCAGG ........................ GCTGTTGTAGCTAACATCGCTAGGTTTTGAGGAGATAGGA 941021 24 100.0 39 GGAGATAGGA ........................ ACTACCTTCCGGTGAGAACGAGCCACCTGTTCAATACCT 941084 24 100.0 39 TTCAATACCT ........................ TAAAGGTGAAAGGAGAAGTATACAAGTTGAGTTACCAAA 941147 24 100.0 40 AGTTACCAAA ........................ AAGGGGGAGGTATTTACTCCGGCCTTAGCGAAATATCTAA 941211 24 100.0 40 AAATATCTAA ........................ TTGTCTCTTCTTCTAATAAGTCCATGCCCTCTGCATCAGA 941275 24 100.0 40 CTGCATCAGA ........................ TAGTAGAAGGCGTAATGGAGACCATGCCGAATATTGAAAT 941339 24 100.0 38 ATATTGAAAT ........................ CCGCCATGTGTTTACTGGTACAAGTAAAAGAAGGAAAG 941401 24 100.0 39 AGAAGGAAAG ........................ AGCTTACAATCTCAAAGATAATCGCTGAAAGGGAGGGAA 941464 24 100.0 38 AGGGAGGGAA ........................ AGCCACGGGATAGACAGGTTGCCGGAAGAGACGTTAAG 941526 24 100.0 42 AGACGTTAAG ........................ TGAATGCAACAGTAAAGGTTAAATTTGCAACAGTGTAAAAGT 941592 24 100.0 39 GTGTAAAAGT ........................ TGATAGTTGATGCAGAAAAGATATATAAATATATTATTA 941655 24 100.0 39 TATATTATTA ........................ TTTCACTATAGTTATCTTGACCCTTATGGCGGGGTTGTT 941718 24 100.0 38 CGGGGTTGTT ........................ CATGAAATATCTCGAAGCGGGGAAGATAAATTTCTACA 941780 24 100.0 38 AATTTCTACA ........................ GTGTAGCGTCACTTGAGAACCTGCACGGTGAAGCTAGG 941842 24 100.0 TGAAGCTAGG ........................ CTGAGGGTTT ========== ====== ====== ====== ========== ======================== 99 24 39 CTTTCAATTCTATAGTAGATTATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [50,395] Score: 0.18/0.18 # # Final direction: R [0,5.09 Confidence: HIGH] >NC_012632 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 946465 24 100.0 41 AAACCCTCAG ........................ TCATTTTAGACATTGTGTCGAGGAGCATGGACTTGATGTTG 946530 24 100.0 40 CTTGATGTTG ........................ CTAAATATTAAAGTTTTGCATTCTTTGTACGCGTCACCAG 946594 24 100.0 42 GCGTCACCAG ........................ GTAAAAATTACAGAATCTCTTTATAAAATTTTAGAGCAGAAG 946660 24 100.0 41 AGAGCAGAAG ........................ ATCAGAGTTGATTATTTGCCAACTGGTGCAGTTCTTATAGG 946725 24 100.0 36 TTCTTATAGG ........................ ATGGTTGAAAGTACGTCATGGAAAGTACTACCGTAT 946785 24 100.0 39 ACTACCGTAT ........................ CTTCTAATTCTTCTTTTAGCCTTGATGCAATCAGTATCA 946848 24 100.0 41 ATCAGTATCA ........................ GTATTGAACGCAGATATTAAAGCAGCATCTTCATATTCCGT 946913 24 100.0 43 CATATTCCGT ........................ CGGCGGTTACAACAACAAGTACTGCATACGTGATGGTGGGTTA 946980 24 100.0 41 TGGTGGGTTA ........................ TTGATTAACACTAGAAATCGCATTTGAAATAATCGTTACGG 947045 24 100.0 37 ATCGTTACGG ........................ GTTCTCTGTTCTGCCATATCGCTATCCAGTAATCACT 947106 24 100.0 39 AGTAATCACT ........................ ACCTAGTGGTAATGGGGGATTCGCGTTAAACGTCACCTT 947169 24 100.0 38 ACGTCACCTT ........................ ATTTATAACAAACTCCAAGAATGGGAGAGAGTAAACAT 947231 24 100.0 39 GAGTAAACAT ........................ CTTTTCTGTAATCGCTGGGATTCCTCATTATCAGATAAT 947294 24 100.0 38 ATCAGATAAT ........................ TGGCTTGTTAAGCCAGGGAACTTACACACGTAACGTTT 947356 24 100.0 36 CGTAACGTTT ........................ AAATCTTTCGCTAACGGAGAGGTTAGATCTGCGGCT 947416 24 100.0 39 ATCTGCGGCT ........................ CCAGTTGTCGCTTCATATGCAACATCTATCCAATACGTT 947479 24 100.0 40 CCAATACGTT ........................ AATGGCAAAAGGAACTAGTTGAATCTTCTCTTAAGTTAAA 947543 24 100.0 41 TTAAGTTAAA ........................ ACTACCATCCAGTCCCTACAATTTACCGGGTACAGGTCTAC 947608 24 100.0 38 ACAGGTCTAC ........................ TCTGAAGTTGTGCCCCCCTCACTTTCACTTTCCTCCTC 947670 24 100.0 39 TTTCCTCCTC ........................ TGTAACGGTTGAATATATTAATCACGTACACACGTATGT 947733 24 100.0 38 ACACGTATGT ........................ TGGGAAATACTCATCCGCCATGTTTTCACTAAAACATA 947795 24 100.0 37 CTAAAACATA ........................ ATTACTAAAAGGTCGTTCTTGGGATCGTATCTATATC 947856 24 100.0 43 TATCTATATC ........................ ACAAATAGAATTGCGACCGGGTACAATTTTGACAACAAAACTA 947923 24 100.0 38 AACAAAACTA ........................ CTTACTTTATGGTCCCTTTCTAATTATGCTGACTTCAG 947985 24 100.0 38 CTGACTTCAG ........................ ATATTATCATCATTGAATATCTCTACTGTATATGTTTG 948047 24 100.0 42 TATATGTTTG ........................ CTAGCATATGTTAGATTTAGCGATTGAATTACAGTTCCCGCT 948113 24 100.0 39 AGTTCCCGCT ........................ GTTAGCAGAAATAATAGCTACATATGACCCTAACAATGT 948176 24 100.0 39 CTAACAATGT ........................ TTAAGTTATTGGGGACAATACGGGGGATTTTTATTCAAT 948239 24 100.0 42 TTTATTCAAT ........................ GTAAATCCATATGAGTTCTATCAACTACTTCAGCAAACTGGA 948305 24 100.0 43 GCAAACTGGA ........................ TAGAAATAGTATTTCCGTCGGTGGTAGTTAAGTGCTCAAAAAA 948372 24 100.0 39 GCTCAAAAAA ........................ ATCTTTGGGAGGGCGAGCGGGTTTATCCCGAAGTTCGGG 948435 24 100.0 38 GAAGTTCGGG ........................ AAACCGCATCACAGTGGTTTTGAAGAAGTAAATATTTA 948497 24 100.0 41 TAAATATTTA ........................ TTTGTGAGTTGGAGACCGTTACGGCCACGCATTCCACGCGT 948562 24 100.0 40 TTCCACGCGT ........................ ATAATACGGTACCTACGTCCATTTGCGACGTCTCATTAAT 948626 24 100.0 43 TCTCATTAAT ........................ AGAACGGGTAAGCATTCCTCTACCTTATGCACCACATCAATCT 948693 24 100.0 39 ACATCAATCT ........................ TAGGGTTTGGGATAGCTAATGCCAATCTAAGTCATCTAT 948756 24 100.0 38 AGTCATCTAT ........................ GAACAGGTCGAAAGAGCTGAGCTTTGGCATGCAATTTA 948818 24 100.0 37 ATGCAATTTA ........................ TTAGTTTGAACAAGTTGGACATAACGTCCGTAGAACC 948879 24 100.0 40 CCGTAGAACC ........................ TATTGTCCTGCAGTCTCGTAATATACTTTAGTCCCATACA 948943 24 100.0 43 GTCCCATACA ........................ TCTATATTGAATTCTATGCATATTCAATATTTCTCAACACCTT 949010 24 100.0 40 TCAACACCTT ........................ TCTACAATTTTGGAGGAATTTGGATTAGATTTAACTTTAT 949074 24 100.0 38 TTAACTTTAT ........................ TAATTTTTTCGTTGTTTTTATCAAAACACAAAGCACTA 949136 24 100.0 42 CAAAGCACTA ........................ GAAGAAGAGTTAGCAATATTAGATCTATATTGCGCAAATATG 949202 24 100.0 38 CGCAAATATG ........................ AATCTACGGTGCAGCAGGTCTATTTTTTGGAGTATTGA 949264 24 100.0 39 GGAGTATTGA ........................ AGTACAGGGACGTTCAATGAGTAAGGCTCCGCAAGGTAG 949327 24 100.0 44 CGCAAGGTAG ........................ TTTGTAACCACCTTTTCGGTTACGCTCTCAAACTTACCACTAAT 949395 24 100.0 41 TACCACTAAT ........................ AATTCTTTCAATCTTTCTCTTATTGCCTCGTTAACAAATTC 949460 24 100.0 39 TAACAAATTC ........................ TAGACCCTTCTTATCTACTTAGGAAGTTAGACGGTTACC 949523 24 100.0 38 GACGGTTACC ........................ AGAAAGAAACTGGGCAGAACTAAGAAACTTTATATCAA 949585 24 100.0 40 TTTATATCAA ........................ TCATTTGTATACAATCTTATACATATTTCTTCATTATTCT 949649 24 100.0 39 TCATTATTCT ........................ ACGTACATAAAAATTGCTATAGCATTTGGAGCTGCGGCA 949712 24 100.0 41 AGCTGCGGCA ........................ TCCAGGACGGAACAAAGCTAGGGGAATTATTTGCAACGTCC 949777 24 100.0 41 TGCAACGTCC ........................ TTATTTCTCAGAATATCAGAGAAATGGGATCGACAAACGGG 949842 24 100.0 40 GACAAACGGG ........................ TATAATAATTAAATACTTTGGTGTTAGACTGAAATCTCTT 949906 24 100.0 39 GAAATCTCTT ........................ TACCACCGTTGCATTTGTTATCTCTCGGTAGTATACTTT 949969 24 100.0 41 AGTATACTTT ........................ TCAAAAATTTGTTCTTGACAGGTCAGAAAAGGACTGGTAAG 950034 24 100.0 42 GACTGGTAAG ........................ TCAACTACTACAACTCCTGCATATGTATTTCCTACAACTCTT 950100 24 100.0 40 TACAACTCTT ........................ GTGATAATAATCCAGTTGAAGTTGAAGTAGTCATAGATGT 950164 24 100.0 40 TCATAGATGT ........................ TGTACTCTGGATAGGGGAACCCGACAATGAAGATAGCCTT 950228 24 100.0 37 AGATAGCCTT ........................ GTTCTAATAGCTTCTGTTTCAGAGATGGGTTAGCTAA 950289 24 100.0 39 GGTTAGCTAA ........................ AAGCCCTATTTAGGGGGTAAACCCCCTAAAACCCCACGT 950352 24 100.0 40 AACCCCACGT ........................ CTTGACATTATTCTTATACAATCTAAACAATAACTATGTG 950416 24 100.0 40 TAACTATGTG ........................ GTTTTATTAGATAAAAATGAAGTTGAAGAAAAAATTATTA 950480 24 100.0 37 AAAATTATTA ........................ ACTGATACTCTATCCCATATATTGCAAGATCCCTATC 950541 24 100.0 40 GATCCCTATC ........................ ATCTTCATCTCCAAACTACTGCTATTAACTTATCTCACTC 950605 24 100.0 39 TATCTCACTC ........................ AAACGAAATATCGAAGGCGTCAGATGAGGAAAGGAAGAA 950668 24 95.8 AAAGGAAGAA .......................T ACTATAATG ========== ====== ====== ====== ========== ======================== 67 24 39 GATAATCTACTATAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.00%AT] # Reference repeat match suggestion: F [matched GATAATCTCTTATAGAATTGAAAG with 91% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [304,267] Score: 0/0.18 # # Final direction: F [5.41,0 Confidence: HIGH] >NC_012759 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2761535 29 100.0 32 NNNNNNNNNN ................AT.........A. CAGCGTCAGGCGTGAAATCTCACCGTCGTTGC 2761596 29 100.0 32 NNNNNNNNNN ...........T................. TCGGTTCAGGCGTTGCAAACCTGGCTACCGGG 2761657 29 100.0 32 NNNNNNNNNN ...............AA............ GTAGTCCATCATTCCACCTATGTCTGAACTCC 2761718 29 100.0 32 NNNNNNNNNN ............................. CCGGGGGATAATGTTTACGGTCATGCGCCCCC 2761779 29 100.0 32 NNNNNNNNNN ............................. TGGGCGGCTTGCCTTGCAGCCAGCTCCAGCAG 2761840 29 100.0 32 NNNNNNNNNN ............................. AAGCTGGCTGGCAATCTCTTTCGGGGTGAGTC 2761901 29 100.0 32 NNNNNNNNNN ............................. TAGTTTCCGTATCTCCGGATTTATAAAGCTGA 2761962 29 100.0 33 NNNNNNNNNN ............................. GCAGGCGGCGACGCGCAGGGTATGCGCGATTCG 2762024 29 100.0 33 NNNNNNNNNN ............................. GCGACCGCTCAGAAATTCCAGACCCGATCCAAA 2762086 29 100.0 32 NNNNNNNNNN ............................. TCAACATTATCAATTACAACCGACAGGGAGCC 2762147 29 100.0 32 NNNNNNNNNN ............................. AGCGTGTTCGGCATCACCTTTGGCTTCGGCTG 2762208 29 100.0 32 NNNNNNNNNN ............................. TGCGTGAGCGTATCGCCGCGCGTCTGCGAAAG 2762269 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 13 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,6] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [41.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [84,107] Score: 0/0.18 # # Final direction: R [0,1.92 Confidence: HIGH] >NC_012759 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================== ====== 2787848 26 100.0 35 GTTATATGGT .......................... TCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCC 2787909 26 100.0 35 GTCAGGCTCC .......................... ACCTGTTTTCGCAAATCTATGGACTATTGCTATTC 2787970 26 100.0 35 ATTGCTATTC .......................... ACGGGCGCACGGAATACAAAGCCGTGTATCTGCTC 2788031 26 100.0 35 GTATCTGCTC .......................... ACTGGCTCTGCAACAGCAGCACCCATGACCACGTC 2788092 26 100.0 35 TGACCACGTC .......................... ACGAAATGCTGGTGAGCGTTAATGCCGCAAACACA 2788153 26 100.0 35 CGCAAACACA .......................... ACATTACGCCTTTTTGCGATTGCCCGGTTTTTGCC 2788214 26 100.0 GGTTTTTGCC .......................... ACTCTAAACA ========== ====== ====== ====== ========== ========================== 7 26 35 GGTTTATCCCCGCTGGCGCGGGGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 89% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-5.70,-6.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [641,343] Score: 0/0.18 # # Final direction: R [0,1.24 Confidence: HIGH] >NC_012726 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 861534 24 100.0 39 TAAACCCTCA ........................ GTAGTTCCAGAAAGCGTAAAAATGAAGCTACTAGACGAA 861597 24 100.0 39 ACTAGACGAA ........................ TTGAGTTATTGCGTAATATCCTTGTCCGCTTGTGTGTGT 861660 24 100.0 42 TTGTGTGTGT ........................ TTTACGACAAAGTTACCTAGACTTTGAACTGCATTTGTTAAT 861726 24 100.0 40 ATTTGTTAAT ........................ ACTTTTCTGATATTCTGAGAAATAATGGAATGTCCCACAT 861790 24 100.0 41 TGTCCCACAT ........................ TTTTTGCTGCACTGTTGGAATTTGAAATACATTCATTATTT 861855 24 100.0 43 TTCATTATTT ........................ TGTAACTTTACAGTAAGAAGCTGGATTAGGATTTCTTCTACAT 861922 24 100.0 39 TCTTCTACAT ........................ AACCGGGCCTCTCTCATTTAGAATGACGGATGCTTCTTT 861985 24 100.0 39 ATGCTTCTTT ........................ TGTATCGTGAAGGTCAGGATTATTTCGTTAGGCTCACAT 862048 24 100.0 40 AGGCTCACAT ........................ CCTCATCTTCATCAATATTATATTCTTCCTTAGCTGCATA 862112 24 100.0 37 TAGCTGCATA ........................ CTTGATTCTTTCTTCTCCCTTTAGATTATCTAGTTTT 862173 24 100.0 39 ATCTAGTTTT ........................ CTGACCCAACCCTAAAATAACGTATAAGTTCGCTCTCAT 862236 24 100.0 38 TCGCTCTCAT ........................ AGCCATCCAGGTCTGAAAATGACTAAGGGGATTATTTG 862298 24 100.0 39 GGATTATTTG ........................ TCTTTTCATTCATTCTGCTTTCCCCTGATTTTATAGTAG 862361 24 100.0 40 TTTATAGTAG ........................ AGTATGTCCCTATCAATTACATCTGGTATATCCTCAACCT 862425 24 100.0 40 TCCTCAACCT ........................ ATATCTCTCTATGAAATTGTACTACTACATCTTCCTCACT 862489 24 100.0 39 CTTCCTCACT ........................ TCCCATCCCCCACGCTAACTCGATATTACCATCATCTAA 862552 24 100.0 39 CATCATCTAA ........................ CTTCCTCCAAAAGAAGCACCCTTGGTATTATTGTACGAT 862615 24 100.0 39 ATTGTACGAT ........................ AGGGTACTACCAGCGTAAATTCCGCCTACAATTGATATT 862678 24 100.0 39 AATTGATATT ........................ TTCTGTTCTGTGTTGTTCTGTTCTATACTCTGTTCTCTG 862741 24 100.0 39 CTGTTCTCTG ........................ ATTAAACCAAAATGTGCCTTGAGCCAACTTTATTACAAT 862804 24 100.0 36 TTATTACAAT ........................ TACACCCCTCGCGGGGGTCATCGCCATCCGCTTTTA 862864 24 100.0 39 TCCGCTTTTA ........................ TATTCTGTCTCTCAAGATTCAAGATTTGCAAAACACTTA 862927 24 100.0 39 AAAACACTTA ........................ ATAACAATTCCTAGCTCTTCATCCTATATACCGTCTGTT 862990 24 100.0 44 ACCGTCTGTT ........................ ATAAATGCTTTTGTTGAAAATTTTCTTGAAAATTCGCTACATCG 863058 24 100.0 39 CGCTACATCG ........................ TACAATTTCGCTAGTTGTATCTACGTTGTTAAACACTAC 863121 24 100.0 42 TAAACACTAC ........................ CATTCTTTCCCGCCTTCTCATCTTCTATCTTTTTCCTTACTG 863187 24 100.0 39 TTCCTTACTG ........................ ATTTCGCTCTCTAACTCTATTGTTCCAGTTGAGGAAACA 863250 24 100.0 39 TGAGGAAACA ........................ CTTTTAGGCTATAAGACTCATGCAAATATACAGAGAAGA 863313 24 100.0 39 ACAGAGAAGA ........................ AACTTATTATGTATTGTTACCATGTGTACATTTCTAGCG 863376 24 100.0 39 ATTTCTAGCG ........................ ACTTTCGTTTAGATTTACCTAGGGAGATTCAAGAAAAGT 863439 24 100.0 39 CAAGAAAAGT ........................ TATCGGTGCCTTAGCGTCAAACGTTGAAACAATATTAGC 863502 24 100.0 39 CAATATTAGC ........................ TTTTCACAGAATCCCGAGCAGTTGGCAATCGCAGCAGCT 863565 24 100.0 41 CGCAGCAGCT ........................ AATATCTGGATCATATATGCCTTAAGTTTTGGATTATATCT 863630 24 100.0 39 GATTATATCT ........................ ATAGAATGAATATTGCACCGTCTTTACAACATTACCAAA 863693 24 100.0 39 CATTACCAAA ........................ TTAACACTTAAACTTGAGTTATCATCATCAATTGATAAA 863756 24 100.0 41 AATTGATAAA ........................ CCTATACTAACAATTATTGACAACGACACATTACAAGAAGA 863821 24 100.0 42 TACAAGAAGA ........................ TTGAACGCTTGCCAATTTGCGATACCACTTGCTTGAGTTCCA 863887 24 100.0 39 TTGAGTTCCA ........................ ACTCTCAATAGAAAACTCCCTACCCTGATTTGTTCATCA 863950 24 100.0 41 TTGTTCATCA ........................ TGCACATGTCTCAAGACTATTGTACTTTTGCTTGCAAAGAT 864015 24 100.0 41 TTGCAAAGAT ........................ TCTAAGATTTCCCCTATAGTATCTTGCAGTTCTTCTAATTC 864080 24 100.0 40 CTTCTAATTC ........................ TTTTTCACTTCCTCCAGCTTGGCTTCTAATTCTCTGACAC 864144 24 100.0 41 TCTCTGACAC ........................ ATTTAGTTACTGTAAACTCCCCAGTTTACGAAATAATTAAT 864209 24 100.0 39 AATAATTAAT ........................ TACTGCCTGGAAAATATATATGACATTCAAGAAAACATT 864272 24 100.0 38 AGAAAACATT ........................ ACAAAAACATGAGCCAAATTCCACTCGATTTGGATATA 864334 24 100.0 40 TTTGGATATA ........................ ATTTCAATAAACTTAAAAGTTCTTTATCCAGAATCGATAA 864398 24 100.0 42 GAATCGATAA ........................ ATGACATATTTACAGCACTAAAAGAGGCATTATCAGAGTTAA 864464 24 100.0 39 TCAGAGTTAA ........................ TAGGAACACTAATAGGTGAGTAAGTATCGAACCCTACAT 864527 24 100.0 38 AACCCTACAT ........................ TCGTAAGAACGATCCTAAAGTTTGTTATCGTAAATCCA 864589 24 100.0 37 CGTAAATCCA ........................ CACTTCCTCAATCTCCTTTACATTATAAGTGACCTTG 864650 24 100.0 39 AGTGACCTTG ........................ TCATGGGCTTATCACCTCATTCTTCCTCCTCTTCGTCTT 864713 24 100.0 38 TCTTCGTCTT ........................ ACAATTATTGTGCCGGGTTTAGCATATTCTTCAACTAT 864775 24 100.0 41 CTTCAACTAT ........................ ACAAGTGTTATTGATATCGGTGCATATGTTGGCGATACTGC 864840 24 100.0 43 GCGATACTGC ........................ CAAACAGCTGTTCAACAACAAACAGTAACGCAACAAGCCTCGT 864907 24 100.0 40 CAAGCCTCGT ........................ ATCCCAATAGCTCGAAAAACCCCTCACTTTCGTTAAACTT 864971 24 100.0 40 CGTTAAACTT ........................ TTTTAATATAGTCCTCGACCATAAGTAGAATCTCAGCAAT 865035 24 95.8 40 TCTCAGCAAT ......T................. CAATATAAAATAATAATAAAATTGAAAGGAAGTAAGTGCG 865099 24 100.0 41 AGTAAGTGCG ........................ TTTCTCTCTATGTCATTTGTTCCTTATAAATGTTTCTCTCT 865164 24 100.0 43 GTTTCTCTCT ........................ ACTAGCTCTAGCTCTGCTGGAGGATTTAGTGGCTCAACGCTAT 865231 24 100.0 40 TCAACGCTAT ........................ TAAAATTCCTAAATTTTGCAATGCTTCTTGCAATAACAAA 865295 24 100.0 40 CAATAACAAA ........................ CATGAACATTAATGTAGTTGAGGCCGACCTAACATACAAG 865359 24 95.8 AACATACAAG .......................T ACTATAATG ========== ====== ====== ====== ========== ======================== 61 24 39 GATAATCTACTATAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.00%AT] # Reference repeat match suggestion: F [matched GATAATCTCTTATAGAATTGAAAG with 91% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [303,267] Score: 0/0.18 # # Final direction: F [5.41,0 Confidence: HIGH] >NC_012691 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1497898 28 100.0 32 NNNNNNNNNN ............................ AGCCAGACCAACCGATATGAGAGAGATCATGA 1497958 28 100.0 32 NNNNNNNNNN ............................ TATTATTAGAAGCCATTAAGCTAGAAAAAGAT 1498018 28 100.0 32 NNNNNNNNNN ............................ TTGAAACCATTCTTTGAATTTTGGGCTTGTTG 1498078 28 100.0 32 NNNNNNNNNN ............................ ATCTTCCACTGATGGATAGTCGACTAGGATGC 1498138 28 100.0 32 NNNNNNNNNN ............................ TCCATTATCCCAGTTGTACGCATTCATGCGCT 1498198 28 100.0 32 NNNNNNNNNN ............................ AGCTCACATGAACTGCCGTAGCTTGAGAATCC 1498258 28 100.0 32 NNNNNNNNNN ............................ GAAAACCTGAATCGTGACAGGCTTCCGCACTC 1498318 28 100.0 32 NNNNNNNNNN ............................ TGGCTGTTTAACAGATGGCAGTCATTCTGTAT 1498378 28 100.0 32 NNNNNNNNNN ............................ AAATCAATCGCGTCAGTATTTCCACACCCTGC 1498438 28 100.0 32 NNNNNNNNNN ............................ AGACGGTTTTTCCTTCCCCTCTAGCAGATACC 1498498 28 100.0 32 NNNNNNNNNN ............................ TTTACAGATAGCGTTATGTTGTAAGACTTCCG 1498558 28 100.0 32 NNNNNNNNNN ............................ ATGAAGCGCCAAAAGGCCGATGCCGCGTGGAA 1498618 28 100.0 32 NNNNNNNNNN ............................ GTCGACGAACTGGAGCACGCCGGAGCGCCGGA 1498678 28 100.0 32 NNNNNNNNNN ............................ AACGTAGGCGTGAATGGCGTCACAGGCATTTC 1498738 28 100.0 32 NNNNNNNNNN ............................ CGATGGCGCGACCGACATAGCAAACGCACTAA 1498798 28 100.0 32 NNNNNNNNNN ............................ TGCCGCCCGGTGCAGGTCAATCATCGCGGTTT 1498858 28 100.0 32 NNNNNNNNNN ............................ TGGTACGCGCCTTGTGCTATTTCAGCTCCGCT 1498918 28 100.0 32 NNNNNNNNNN ............................ TGGCGCATTACCAGGTATCGGCAGATTACCGA 1498978 28 100.0 32 NNNNNNNNNN ............................ AGCAAGCGCGCAAGATGCTTGAGCGAATGAAA 1499038 28 100.0 32 NNNNNNNNNN ............................ TATGTCAATCTGACCTGTTTTGAGCAAGAACA 1499098 28 100.0 32 NNNNNNNNNN ............................ AGACTGCCGCCAATGGCTTAGATACTGTAAAT 1499158 28 100.0 32 NNNNNNNNNN ............................ TTTGGCGATCAGGTGGCGGCGATCCAATCCTC 1499218 28 100.0 32 NNNNNNNNNN ............................ TGGCGCGTTCATCGACTGATTTTAGTGCTAGA 1499278 28 100.0 32 NNNNNNNNNN ............................ TTCGCGGTGATGTGGCGCTTCGCGGAGGAATA 1499338 28 100.0 32 NNNNNNNNNN ............................ GTCAGCCAGCTACACCGCCGCTGATGTGCTGG 1499398 28 100.0 32 NNNNNNNNNN ............................ AACGGGGCAACTACGCATACTGGATGAGGTAA 1499458 28 100.0 32 NNNNNNNNNN ............................ GTAACACGTACCCAGAGCTGAAAGGCACAGTC 1499518 28 100.0 32 NNNNNNNNNN ............................ GAAGGCTGAGAACCACGATAACCACAAAAAGG 1499578 28 100.0 32 NNNNNNNNNN ............................ TACCGAAAACGTCTACTGCTAAAAATAGGCGC 1499638 28 100.0 32 NNNNNNNNNN ............................ GGAGCTGAGCAGCACGCTGGTGTCAGTCGTGA 1499698 28 100.0 32 NNNNNNNNNN ............................ AAGCGGTGCTGATCAGCATGGCGTATCAGATG 1499758 28 100.0 32 NNNNNNNNNN ............................ TTCATGATGGCAGGCATGATGGGAATGCCGAC 1499818 28 100.0 32 NNNNNNNNNN ............................ AAGATCTGGTGCGCTTGCATTGCTTCCGGTGT 1499878 28 100.0 32 NNNNNNNNNN ............................ AAGCCGATGATCCGCCGCTTCTACGCGTGGAT 1499938 28 100.0 32 NNNNNNNNNN ............................ ACACCGGAGAAACGGGATTTTTTCGCACCACA 1499998 28 100.0 32 NNNNNNNNNN ............................ GGCGGCATATCGAAGTGATGCTGTATGACGAA 1500058 28 100.0 32 NNNNNNNNNN ............................ GGTTCAGGCGTACAATAATTTCACCAATAGCC 1500118 28 100.0 32 NNNNNNNNNN ............................ ATTACAGTGTCGCCAGCCGGTATGCTTGCTGC 1500178 28 100.0 32 NNNNNNNNNN ............................ TGGCGTTAAACTGCAAATAGTTCTCCAGTGAC 1500238 28 100.0 32 NNNNNNNNNN ............................ TATTGCGGTAAACGCATGAGATCCTGCCTTTA 1500298 28 100.0 32 NNNNNNNNNN ............................ AGCGGGGCAGGGATGGCGACATGGAACGCATG 1500358 28 100.0 32 NNNNNNNNNN ............................ GAAAGTGATTGAGCTGTGCCATGGCATCAAGA 1500418 28 100.0 32 NNNNNNNNNN ............................ TGCTTGCAACGGTTGGTAGCGAGCCATATCCG 1500478 28 100.0 32 NNNNNNNNNN ............................ GCCTGCATCACTTATTGACCACATCATTGCAG 1500538 28 100.0 32 NNNNNNNNNN ............................ TGTGCAACCAGGTGAACAATGCGAACAGGTTT 1500598 28 100.0 32 NNNNNNNNNN ............................ TGCTGGGCGGCTGGCTCCGCGCTCAAAACTAG 1500658 28 100.0 32 NNNNNNNNNN ............................ TTTGATTTCACGCTCGATGCCGATCATGTGAA 1500718 28 100.0 32 NNNNNNNNNN ............................ TGGGAAACTACCGCTCGACGTGCTAGACGTAG 1500778 28 100.0 32 NNNNNNNNNN ............................ AATGACGGTAACCAGCTGGCAGCTAACTACTA 1500838 28 100.0 32 NNNNNNNNNN ............................ TTTGCAAACAACAGAGACACAACCAGGTGTCA 1500898 28 100.0 32 NNNNNNNNNN ............................ AGTGATTGGTGTGCTGTCTTCGTCCAGGAACG 1500958 28 100.0 32 NNNNNNNNNN ............................ ATAAAAGCTGGAACCCACGCCCGCAGCGTGCA 1501018 28 100.0 32 NNNNNNNNNN ............................ AGGTAGAGGGAACCACCCACAGTCAGGTTGTC 1501078 28 100.0 32 NNNNNNNNNN ............................ AGAAGAACAAATTGTTGTGTACCGGTTACGAG 1501138 28 100.0 32 NNNNNNNNNN ............................ CGCAGCGTGCACAAAGAACGCCAGCAAAGCCA 1501198 28 100.0 32 NNNNNNNNNN ............................ AGCTGGCAGCTAACTACTACACTGCCGAAATC 1501258 28 100.0 32 NNNNNNNNNN ............................ AGCGGTATTGATGCGTTGTCTGGAGCGATCGT 1501318 28 100.0 32 NNNNNNNNNN ............................ AATGTGCGCATTTTATCAGGATCTAATTCGAC 1501378 28 100.0 33 NNNNNNNNNN ............................ AATGGAAGCCCCACGTCAATCACTGTCTTATCT 1501439 28 100.0 32 NNNNNNNNNN ............................ GCTGCTGCTAATGCAACAAAACAAATAAATAG 1501499 28 100.0 32 NNNNNNNNNN ............................ GGCCGAGCGCGTGGGAATTGGCACGCAGAAAT 1501559 28 100.0 32 NNNNNNNNNN ............................ AAGGCATGGCCTGTAAATCTCGAATATTACGA 1501619 28 100.0 32 NNNNNNNNNN ............................ AACTGGTGAAACGCATTCCAGCCCGAAAGCGC 1501679 28 100.0 32 NNNNNNNNNN ............................ TGATATCGCCCGGTGGGGACATGGCAGCTGGT 1501739 28 100.0 32 NNNNNNNNNN ............................ AGCCCGGCAGTAGCCATAAAATCCAAGGAAAC 1501799 28 100.0 32 NNNNNNNNNN ............................ ATAAATGAATAAGATAAATATTCAAGAATAGC 1501859 28 100.0 32 NNNNNNNNNN ............................ CAATCCGCTTGCGCAATATTATGTATCTCCGA 1501919 28 100.0 32 NNNNNNNNNN ............................ GCAAACTGAGCGTTAAGTTGGATCTGTGTTTC 1501979 28 100.0 32 NNNNNNNNNN ............................ AAAACACGCTGGGCATTGCTCGCCCTTTCTTT 1502039 28 100.0 32 NNNNNNNNNN ............................ ACATGGCAACAGATTATCACCACGGCGTCCGC 1502099 28 100.0 32 NNNNNNNNNN ............................ CGCTGCAATTATCGATTAGCCTGGCAGAACCG 1502159 28 100.0 32 NNNNNNNNNN ............................ AGTACACGCTCTCTGTGCGCCCGGGCTGGATT 1502219 28 100.0 32 NNNNNNNNNN ............................ ATCTGCGATTTCACCTGGCCATGAGGTGCTTT 1502279 28 100.0 32 NNNNNNNNNN ............................ AATTGGTACGACAACCGGACGATCTCGCACTA 1502339 28 100.0 32 NNNNNNNNNN ............................ AAGGAATCCGCCGTGATGGCGAATTTCACCAG 1502399 28 100.0 32 NNNNNNNNNN ............................ ATCGGGCGATCTGGGTGCGGCAGTAATATCGC 1502459 28 100.0 32 NNNNNNNNNN ............................ CAATCCCTGCGGGCTTGCGCGGTATGGGGGCA 1502519 28 100.0 32 NNNNNNNNNN ............................ GGAAATCTCCAAATCACCGTCAATCTCATATT 1502579 28 100.0 32 NNNNNNNNNN ............................ TGCGTCCCATTTTTTGACCTGCATCAAAGAAA 1502639 28 100.0 32 NNNNNNNNNN ............................ CAAGCGTGATGAATATCATCCCGATTTTTCGT 1502699 28 100.0 32 NNNNNNNNNN ............................ AGTAATTAGCTCCTGCTCTGCCAGCTGAATGA 1502759 28 100.0 32 NNNNNNNNNN ............................ ACCGTAACCAGCAGGGTCACGATATACGTTGA 1502819 28 100.0 32 NNNNNNNNNN ............................ GTGGCCGCAAACGCGAATACGGCACTAATGCC 1502879 28 100.0 32 NNNNNNNNNN ............................ GTTATCTGCGACGTCTAGTTTAGTCAACCATT 1502939 28 100.0 32 NNNNNNNNNN G........................... ATTTGATAGGTATTATGGATTATTTCTTTGCG 1502999 28 100.0 32 NNNNNNNNNN G........................... TTTGTTTATCAAAAAGAGCCAATACCGAGTGC 1503059 28 100.0 32 NNNNNNNNNN G........................... ATTAATGCCGAGAAATACACTGGCGGAAAGTT 1503119 28 100.0 32 NNNNNNNNNN G........................... TTATTAATGCTCTTAATGAGTCTATAACGTTA 1503179 28 100.0 32 NNNNNNNNNN G........................... CAGCTGCCGTCCATTCACAAAAACGGACGATG 1503239 28 100.0 32 NNNNNNNNNN G........................... GGTATGTCAACAGCGGGGTCAAATCTGTTTGG 1503299 28 100.0 32 NNNNNNNNNN G........................... TTCCTTGAAATTGTGTGGGGCAATGTTCGCGA 1503359 28 100.0 32 NNNNNNNNNN G........................... AGACGCCCGCATTGTTGTGATGGAGTTGTGGC 1503419 28 100.0 1 NNNNNNNNNN G................T.AA..TA... NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 93 28 32 CTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 92% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [131,348] Score: 0.18/0.18 # # Final direction: F [1.92,0.18 Confidence: HIGH] >NC_012658 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2385935 30 100.0 35 NNNNNNNNNN T.GC.CC..A.AGGA.AT.A.......... AGGTATAGGAACTCCCGCTACAAGAGGAGAATAGT 2386000 30 100.0 36 NNNNNNNNNN .............................. TATCTTACTGGAAATGTTTTGTTTTATTTCTTCATC 2386066 30 100.0 36 NNNNNNNNNN .............................. GGAAGAAACAGAAAAAATATTTAATAAGATTAAAGA 2386132 30 100.0 36 NNNNNNNNNN .............................. ACTATTCTTCTCTTTTTTTTATTAATCTTTTTACTT 2386198 30 100.0 34 NNNNNNNNNN .............................. AAGAAGAAATTATAGGTGCATATGATCCTAACAC 2386262 30 100.0 35 NNNNNNNNNN .............................. AATAAAGCACTTATAAAATGTGCTTAGAAAGAAGG 2386327 30 100.0 36 NNNNNNNNNN .............................. TATTAATAATGCAAATATAATGCAAAATACATTAAC 2386393 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 8 30 35 ATTTAAATACATCTCATGTTAATGTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [431,889] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_012658 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2386676 30 96.7 35 GAGTTCCCTG -............................. AATACTAAATATGCTTCATATTTTTCATTTTTTTA 2386741 30 100.0 37 CATTTTTTTA .............................. TTGGTGAATGGTATTATATCTACGTTAGGAAAATTAG 2386808 30 100.0 GGAAAATTAG .............................. CACTGTAAAAT ========== ====== ====== ====== ========== ============================== 3 30 36 TCTTAAATACATCCTATGTTAAGGTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.70,-2.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [285,474] Score: 0/0.18 # # Final direction: R [0,1.05 Confidence: HIGH] >NC_012724 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1995500 28 100.0 32 NNNNNNNNNN ............................ CTACCGGCGCGAACTGGAGCGCCTGCTGCTCT 1995560 28 100.0 33 NNNNNNNNNN ............................ CACGAGCGCACACGGCACCGGCCAGTGCGTGCA 1995621 28 100.0 33 NNNNNNNNNN ............................ GCGCTTCAACAGGATTCTCTGACGTCGCCCTGA 1995682 28 100.0 33 NNNNNNNNNN ............................ CTCGAACGGGGACGCGGCATGACTTACCGCGAG 1995743 28 100.0 32 NNNNNNNNNN ................C......AT... CGCGTCATGCGAAACGGATACGTCGAGATCCC 1995803 28 100.0 1 NNNNNNNNNN ................C......AT... NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 6 28 32 TTTCTAAGCTGCCTACACGGCAGCGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [7,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1367,247] Score: 0.18/0.18 # # Final direction: R [0.55,0.64 Confidence: LOW] >NC_012726 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 837983 24 100.0 41 ATATAGTATA ........................ TATTTATATGAAGAAGGATGAAGGAACGTACAATCTTAACA 838048 24 100.0 41 AATCTTAACA ........................ AAAACCTTTATTACAATATATGACATCTATTCAACAATCGT 838113 24 100.0 41 CAACAATCGT ........................ CCCGCATCTAGCGCTCCAATACATGTAGCGTACTTACAACC 838178 24 100.0 38 ACTTACAACC ........................ TGTGGAGTATATAAACAACATGAGAGAGTTCATAGATA 838240 24 100.0 41 TTCATAGATA ........................ AAGGGAAAACAAAGGAAGCAATGGAGGAGCTTGCGAGAGTA 838305 24 100.0 39 TGCGAGAGTA ........................ CAGTTTCGATAGTAGCAATTCTTCTGCACAAGCAGTTCA 838368 24 100.0 39 AAGCAGTTCA ........................ TAAGCAAAGTTACGAGAGATGTGCAAAGAATACTGGAAT 838431 24 100.0 37 ATACTGGAAT ........................ ACTAGGAAGTTGGGGACTGTGTTTGTTGAGAGAGATA 838492 24 100.0 39 GAGAGAGATA ........................ ACTAGTAAGGCATGGTAGAAAATCCCACCATGAATTAAC 838555 24 100.0 39 ATGAATTAAC ........................ TAATATCAAAGCGTCAAAATCTTCTTTAGTCCAAGTCTC 838618 24 100.0 41 TCCAAGTCTC ........................ GCGACTATTGATATTAATACAGTATTTAGATCTGGATCTAC 838683 24 100.0 40 CTGGATCTAC ........................ GTTCCCTTTTGAGCATAAAAAGAGAAAAAAGAGAAACGAG 838747 24 100.0 38 GAGAAACGAG ........................ AGAACTTTCCCCTCATTACTCTCTTCTTCCCTTAGTAT 838809 24 100.0 39 CCCTTAGTAT ........................ TACATTTAGCATGAAATCCCTAGGGACTTATGCAAATGA 838872 24 100.0 40 ATGCAAATGA ........................ ATCCAGAACTTGTTGCATTGAAAGTAAATATGTCTATGAA 838936 24 100.0 37 TGTCTATGAA ........................ CCATAAAAGCAGATGGCGATGACCCCCTTACGGGGTG 838997 24 100.0 40 TTACGGGGTG ........................ AAGAAAGTTGTTGACTATTTTATTAGTTATGGCAAAGAGT 839061 24 100.0 39 GGCAAAGAGT ........................ CATAGAGAACACGATAAAATCCCGAGTTTAGTCGGGAAT 839124 24 100.0 39 AGTCGGGAAT ........................ AAACAATCAACTACAATAGGAAGAGACAAAGAAGTTGAA 839187 24 100.0 39 AGAAGTTGAA ........................ CCGTCATTGTTTGGAATGTCTCCTATCTTAACGAGAACC 839250 24 100.0 41 AACGAGAACC ........................ GAGATGCTAAAATAATGCCTAAATTAAAGTGTCTATTCTCA 839315 24 100.0 37 TCTATTCTCA ........................ TTGGTGAGGATGGTAGGGGTGATGATGGAGAACCGCC 839376 24 100.0 43 GAGAACCGCC ........................ ACGTCGAAGCAAATGATGACAGACCTAAGCCACTTTCTGCATG 839443 24 100.0 40 TTTCTGCATG ........................ TTTGTGCCGTCTCTTAGTATCGCTCTTTTCACTTTCCTAT 839507 24 100.0 40 ACTTTCCTAT ........................ GCGATAGTAAAATTGTCCAATCATTAGAGGAATTAAAAGA 839571 24 100.0 40 AATTAAAAGA ........................ AGAAAGAGTTAGTGAGAGAGTACGGCGTGAGACCACCAAA 839635 24 100.0 40 GACCACCAAA ........................ CTAATTCTTTTTCTATTATATCTGTATAAAATGTTTCGTT 839699 24 95.8 39 ATGTTTCGTT G....................... CCCTACGGGGACGGGAAAGACACTGATGGGCTTGATGAT 839762 24 100.0 43 GCTTGATGAT ........................ CCGTATTACACACATATAGCAATATTCAATCTCATCAATATAT 839829 24 100.0 38 ATCAATATAT ........................ ACACTCCTCATACCTAGCTTTATTTAGCCACGATACTA 839891 24 100.0 40 CACGATACTA ........................ AATTAGGATATAGCTGGAGTCAGATAGCTATTTTTGTGTA 839955 24 100.0 40 TTTTTGTGTA ........................ ATTGAAATACCATCGGCGGATCCATCCCGTTTAGGTAAGA 840019 24 100.0 41 TTAGGTAAGA ........................ TCTAAAGAAATAAAACCGTTTACAATATTATTTATAGACTC 840084 24 100.0 41 TTATAGACTC ........................ ACATTTGTACATAGTTAATCCCACGTTACATACCATTTTTT 840149 24 100.0 39 ACCATTTTTT ........................ ATGGCTTAAAGAGAATCATCCCGAGCTATTGAAGCCAAA 840212 24 100.0 44 TGAAGCCAAA ........................ ATGGCTAGAGGGAAGAGGTGGATTCAAAAGGCAATCAAACATAA 840280 24 100.0 38 TCAAACATAA ........................ CTAATCTGTGTTCCAGTGGCTGCAGAATTACCTGCAGG 840342 24 100.0 38 TACCTGCAGG ........................ CTCCATAGTTTCCCATTCTAGCATCTCTGCAGGTATTT 840404 24 100.0 42 GCAGGTATTT ........................ AAGGTTAGTTGCTGCAATAAAGGCAGTAATAAATACCGTGTA 840470 24 100.0 42 ATACCGTGTA ........................ ATGGAATTGAAAAGTATTTAAAAACCAATCCGTTAGTTGCTT 840536 24 100.0 39 TTAGTTGCTT ........................ TGTAAAGATTGTAAATATTGTTGTAACTCTGATAGGGTT 840599 24 100.0 40 TGATAGGGTT ........................ AGATAACGAATATAAACTTACTGAGGATGCTGCAGGCAGC 840663 24 100.0 42 TGCAGGCAGC ........................ AGAAACCCTTGCCCAATCTGCCAGATCCTCCAGAATTACCTA 840729 24 100.0 41 GAATTACCTA ........................ AAGGTTATCTGGTCCTGTTTAACGCATAGGCTATAACTAAA 840794 24 100.0 38 TATAACTAAA ........................ GTGGGTCTTTCCATTCTGCCTTAATTCACTTATATAGT 840856 24 100.0 38 CTTATATAGT ........................ TTCGAATTATCACTACCAAACACGGGAAAGACAACATT 840918 24 100.0 39 AGACAACATT ........................ TTTTAATCACCAATACCTAAAGAACGATCCAACTCTGAT 840981 24 100.0 36 CAACTCTGAT ........................ ACTTAGGAACAAAGGATACAGTAACGCGGTGTTTAG 841041 24 100.0 37 CGGTGTTTAG ........................ GCGAGAAAACGGGAAAGAAAATAAACGCTGACATTAA 841102 24 100.0 40 CTGACATTAA ........................ ATAATACTTCATATTTAATATACCACCCGCTAGCCCCTTG 841166 24 100.0 40 TAGCCCCTTG ........................ ACTTGTTGCATAGCGGTAGCGAAGTTTTGCTCTGCCTGAG 841230 24 100.0 42 TCTGCCTGAG ........................ AGCGGTGGCGTATGGAACTGGAAATTTAAGTAGACATGTAAT 841296 24 100.0 39 GACATGTAAT ........................ TGGAGTTGATGTCGTAGTAGAAGAGACTCTTGCGGCAAC 841359 24 100.0 39 TTGCGGCAAC ........................ CCCGAAAGTGATAGTGAACTTACCGTTAGGGTTAGTAAA 841422 24 100.0 38 GGTTAGTAAA ........................ ATTCATAGTCACCCTTATACTCCAATTCAAATACTTTA 841484 24 100.0 41 AAATACTTTA ........................ GGGACTTTAGTCCAGAATTGCTTAAACGCGTCAACTACATG 841549 24 100.0 40 CAACTACATG ........................ CACATATAGCAATATTCAATCTCATTAATGTGCTAGCAAA 841613 24 100.0 38 TGCTAGCAAA ........................ GGTGACACGTACAAAGAATGTGAATCTCTCATATTCAA 841675 24 100.0 39 TCATATTCAA ........................ ATGTTAATAATCTTATCTGGACCACCAAAAGCAGGCAAA 841738 24 100.0 39 AGCAGGCAAA ........................ ATGAGGTCACTAAGGGATTGAGGGAAAGGTTTAGGTTTA 841801 24 100.0 38 TTTAGGTTTA ........................ AATCACTGGAAGCGGATCAACGTTATATCTTTATTTGA 841863 24 100.0 40 CTTTATTTGA ........................ GATCCATAAATTGTGCTATCTAAATTAGGGTACTCCAATA 841927 24 100.0 39 TACTCCAATA ........................ TTTAAATATATCCTCATTTCTAGGGTTGAAATAAGGTAC 841990 24 100.0 38 AATAAGGTAC ........................ GTGTCAGTATATCGTACAACGTCAATAACAGTTCAGCA 842052 24 100.0 40 CAGTTCAGCA ........................ AGGAATGAGGTAAAAGAAGAGCAATTAATGAACCTGTTTA 842116 24 100.0 39 AACCTGTTTA ........................ GTTTCTTTTTATGCTTATGCCTCCTGGCCATGAGAAATT 842179 24 100.0 41 ATGAGAAATT ........................ AATAATGGCATCTTTTGGTATGTATAACATACCTCTGAAAA 842244 24 100.0 38 CCTCTGAAAA ........................ ATGAATACCAGCATAAGTGCGCCAGTTGTCGCGTTCAC 842306 24 100.0 40 TCGCGTTCAC ........................ ATGAACTAAAACAGCACGCGGAAGCCCTGGCCTTAGGGCT 842370 24 100.0 43 CCTTAGGGCT ........................ ATGATGAATTCACGAAAGTGCTAGATGCAGACAATATAAGAAT 842437 24 100.0 38 ATATAAGAAT ........................ TTAGCAGATTCACGTTCTGGTCTTGAATTTTTACTCAT 842499 24 100.0 41 TTTTACTCAT ........................ ATAACGCAGAAGACGTAATGAGGATGTTACAAGGGGTGATT 842564 24 100.0 39 AGGGGTGATT ........................ ATCAAGTCCGAGTTTAAAGACAAACGGATTAGGCGGGTT 842627 24 100.0 38 TAGGCGGGTT ........................ AACGTTAAATCGTCTATGACTTGTTCAAATATAAAGTC 842689 24 100.0 39 ATATAAAGTC ........................ GATTATATCAGCAAAAATTACACGGTATCTGGGATCCCA 842752 24 100.0 39 TGGGATCCCA ........................ AAAGATTAATCCTTACACCGGTAGGGAACTGGAATTCTT 842815 24 100.0 40 TGGAATTCTT ........................ ATTTTGACATGTAGATATGTTCCGTACTTTTTACTACCCG 842879 24 100.0 39 TTACTACCCG ........................ GATAAATATTCACCGCCACCGCCTCCGCCACCACCACCT 842942 24 100.0 39 ACCACCACCT ........................ GCTACTTACATTTAAAAGAGAATACATTGAAGATGGAAA 843005 24 100.0 AAGATGGAAA ........................ TGAGGGTTTA ========== ====== ====== ====== ========== ======================== 80 24 39 CTTTCAATTCTATAGTAGATTATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [867,394] Score: 0.18/0.18 # # Final direction: R [0.18,4.5 Confidence: HIGH] >NC_012731 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3001173 28 100.0 33 NNNNNNNNNN TGCTA.GT.....A..T..A........ TCCAGTACGCCAATGCTGGTAGACCCCTCACAA 3001234 28 100.0 33 NNNNNNNNNN ............................ AAAAAGTGGCACTGAGTGAAGCCTCTAAGGTCA 3001295 28 100.0 33 NNNNNNNNNN ............................ AGGTCCAGTTCGTGCTGCCGGATAACGCAGCCG 3001356 28 100.0 33 NNNNNNNNNN ............................ GCATGCTTCCACTCCTTTTGGCGCTCACCTTCA 3001417 28 100.0 33 NNNNNNNNNN ............................ AAAATATTTGCCAGGGTGATAGATGATCCATTA 3001478 28 100.0 33 NNNNNNNNNN ............................ CAGATTAGACTTAAAAAAGTCCTCATCGATGTG 3001539 28 100.0 33 NNNNNNNNNN ............................ TGGAATCGTCACCTGCAGCCACGGTGCCGGTTG 3001600 28 100.0 33 NNNNNNNNNN ............................ GATAACCCATTTCCCCGCGTCATCCTTAACAGG 3001661 28 100.0 33 NNNNNNNNNN ............................ CGATATTTTTTGCACGTATGCCAGATCCGCTGA 3001722 28 100.0 33 NNNNNNNNNN ............................ TGCCGCCAGAATTGCCCGCGTGCACCAGCTTGG 3001783 28 100.0 33 NNNNNNNNNN ............................ ATTTATAAGAGGTCGCAGCGGGGAATTTCGCGA 3001844 28 100.0 33 NNNNNNNNNN ............................ CGCACTAAGACGCTCAGTCCAGGCTTTGATCTG 3001905 28 100.0 33 NNNNNNNNNN ............................ ATTGCCTGACGCCAGGCTATTTCGATATCTGAG 3001966 28 100.0 33 NNNNNNNNNN ............................ ATACCAGGAAAAAGAAGAAATTCGACACCCTGA 3002027 28 100.0 33 NNNNNNNNNN ............................ TTTACTATCCGGATATAGTCGGACCCCATCGAA 3002088 28 100.0 33 NNNNNNNNNN ............................ ACCGCGAAGACGTCTACGACCAGATCGAAATGG 3002149 28 100.0 33 NNNNNNNNNN ............................ ATTCATGGCGGCTCTGCCTGGCTTAATGAAGAA 3002210 28 100.0 33 NNNNNNNNNN ............................ CGGCGCGCCAGGCGTTATTGTCATCCACCCGCA 3002271 28 100.0 33 NNNNNNNNNN ............................ GCCAGCGCAGCGAAGTAGGCAAAGTTGTCATCG 3002332 28 100.0 33 NNNNNNNNNN ............................ GTAGTGCTTGCGAAGGATGGGGGGCATACAGCG 3002393 28 100.0 33 NNNNNNNNNN ............................ GGGCGTGAAGGTTATCGATGGCCACCACCGCTA 3002454 28 100.0 33 NNNNNNNNNN ............................ GTAGTCGGCGCGTCGGTGATAGAGATCGTGGTG 3002515 28 100.0 33 NNNNNNNNNN ............................ GATTTTTATTACACTTTTTATACTTGTGCAAAA 3002576 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 24 28 33 GAAACACCCCCACGTGCGTGGGGAAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-10.90,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [179,49] Score: 0.18/0.18 # # Final direction: F [0.82,0.41 Confidence: MEDIUM] >NC_012778 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1467680 36 100.0 27 NNNNNNNNNN .........................A.......... TTATCTGTGCTAGGAAATGCCATATCC 1467743 36 100.0 26 NNNNNNNNNN .................................... ATGGCAGAAGATACGGCCAGAGCAAT 1467805 36 100.0 26 NNNNNNNNNN ..........................C......... TAACACATATTGTATTGATCATGGAA 1467867 36 100.0 27 NNNNNNNNNN .................................... AAATTATAAAGTAACAACACAAGTAAA 1467930 36 100.0 29 NNNNNNNNNN .................................... ATAAACCAATGAGAAAATTACTTGGATAT 1467995 36 100.0 27 NNNNNNNNNN .................................... CTGTAGCAAGGGCAGTAACCAATTACT 1468058 36 100.0 25 NNNNNNNNNN .................................... ACAACTATTATATAATTATCGGGTG 1468119 36 100.0 27 NNNNNNNNNN .................................... TGAGCCAGTACCAGACACTAAGTATCA 1468182 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 9 36 26 ATCTACAAAGTAGAAATTATTTAAGGTTATTCAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:77.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [683,125] Score: 0.18/0.18 # # Final direction: R [0.18,0.68 Confidence: MEDIUM] >NC_012781 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1596898 36 100.0 30 NNNNNNNNNN .................................... TGCAGCACTTATAGCTATTTTTGTGACACT 1596964 36 100.0 30 NNNNNNNNNN .................................... GAGCAACAATGGAGAAAATACCACGAATGG 1597030 36 100.0 30 NNNNNNNNNN .................................... ATGAAATAGACAAGCTAAAACAGGAAGTAC 1597096 36 100.0 30 NNNNNNNNNN .................................... AATTGCGGAGTATGCAAAAACAACAATGCT 1597162 36 100.0 29 NNNNNNNNNN .................................... GCATTTTAGCCTTGACACGCCAAGCCTAA 1597227 36 100.0 30 NNNNNNNNNN .................................... TTGCATAGCAGCCAGCCGGAAAGAAAGGTG 1597293 36 100.0 30 NNNNNNNNNN .................................... CATGAAAAAATTCCTTCTTAAAGTAATTCT 1597359 36 100.0 29 NNNNNNNNNN .................................... ATGGTGTACTTCCATCCATAGTCTGTCCA 1597424 36 100.0 29 NNNNNNNNNN .................................... AAATCTCTCATAGTTGCGCCCCCTAACAA 1597489 36 100.0 30 NNNNNNNNNN .................................... AAGAACAAATCTATCAAAGGAAGATATTCT 1597555 36 100.0 30 NNNNNNNNNN .................................... CCGCCGGACGGCTTTCTCCAATTATCTACA 1597621 36 100.0 30 NNNNNNNNNN .................................... GATCACATACATCAATCAGATCATCGCCCA 1597687 36 100.0 30 NNNNNNNNNN .................................... CAGGACTAACAAGAGCATTACAACAGCAAG 1597753 36 100.0 29 NNNNNNNNNN .................................... CCAAAGGATTATTAGAATGGTACTTATCA 1597818 36 100.0 30 NNNNNNNNNN .................................... GATTGACCGTCTTAGTCTCATAAGCCTTGT 1597884 36 100.0 30 NNNNNNNNNN .................................... TATCGTGGGGCTTCGGCTTTGCGATTTACA 1597950 36 100.0 29 NNNNNNNNNN .................................... ACAACAGTGTATGCTGTCCGTGTCAGCGT 1598015 36 100.0 30 NNNNNNNNNN .................................... AAAAATGTTTCTGATTGCAAAAGCAGATTA 1598081 36 100.0 30 NNNNNNNNNN .................................... GCATATCCAGGACAGATTGAGTATCAGCTT 1598147 36 100.0 29 NNNNNNNNNN .................................... AGGCAAAAAGCATATATGGAAACACATAG 1598212 36 100.0 29 NNNNNNNNNN .................................... AATAACATACTTTACCTTGTGCCTTAGCG 1598277 36 100.0 30 NNNNNNNNNN .................................... TAAATAGACGCTATGGCTGGGCTTCACCAT 1598343 36 100.0 29 NNNNNNNNNN .................................... AAATCGTGGAAAAAGTGACGAAATAAGCA 1598408 36 100.0 30 NNNNNNNNNN .................................... CGAACTGATAGACAGTGGAACTGTTAGAGA 1598474 36 100.0 30 NNNNNNNNNN .................................... GTAAAGGCGGTGTTGGCTAATGAGCGATAG 1598540 36 100.0 30 NNNNNNNNNN .................................... AGAGCCTTTATATCCTCTAAGCTGGTTACT 1598606 36 100.0 31 NNNNNNNNNN .................................... TGTCAAGTTTATTAGGGGGGTAGAAGATGAT 1598673 36 100.0 29 NNNNNNNNNN .................................... CGTAGCAAATAATTCTAATGAAATCATTA 1598738 36 100.0 30 NNNNNNNNNN .................................... GAGCTTCGGTGCTTTTGTGGGTGGATTTGG 1598804 36 100.0 30 NNNNNNNNNN .................................... CGTTTTCTCCGTATGTGCCCGGGATACGTG 1598870 36 100.0 30 NNNNNNNNNN .................................... GCTCACTTAAATACAGGACTGAAAGGCGGA 1598936 36 100.0 30 NNNNNNNNNN .................................... ATTCATATTGATTAAAGTTATACGCCTCTT 1599002 36 100.0 30 NNNNNNNNNN .................................... ATAAACAATGAAATTCAGAATAGTCGATGC 1599068 36 100.0 30 NNNNNNNNNN .................................... ACTGCCGGAAGTGGCAAGAGCGTAGACACG 1599134 36 100.0 30 NNNNNNNNNN .................................... AGCTTTACAAGAACTTGGTCTTCACGGAAG 1599200 36 100.0 30 NNNNNNNNNN .................................... GGATGTAATGACTCACTCGTCAACCTATCT 1599266 36 100.0 31 NNNNNNNNNN .................................... AAATCCGGTTGCAATCCCAATTATGCCAACC 1599333 36 100.0 30 NNNNNNNNNN .................................... ATCATCATAAACAAGGCCATTATCAATGCA 1599399 36 100.0 30 NNNNNNNNNN .................................... AAGACGTGAAACTGAAGGAATATGCAACAA 1599465 36 100.0 30 NNNNNNNNNN .................................... CAGAATGTTCGGTACCGCATTTTCACGCAT 1599531 36 100.0 30 NNNNNNNNNN .................................... AAGACAAGTTCACTATTGATGCAGCTAACA 1599597 36 100.0 30 NNNNNNNNNN .................................... CGAGCTCAAGCTTGCTAGCTCGCAGCACAC 1599663 36 100.0 30 NNNNNNNNNN .................................... ACATGTAGCTCTCAGGAGCGTTGGTCTTGT 1599729 36 100.0 29 NNNNNNNNNN .................................... TTTTTTTATTTTAATGTACATAAAACTAT 1599794 36 100.0 1 NNNNNNNNNN ............................GC..T.TA NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 45 36 29 ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.30,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [73.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [83,282] Score: 0.18/0.18 # # Final direction: R [0.41,0.45 Confidence: LOW] >NC_012781 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 2352853 32 100.0 33 NNNNNNNNNN ........T...A..............A.... GGCAGGTACAGGCACAGCCACTAACCTTGCAGA 2352918 32 100.0 34 NNNNNNNNNN .............T.................. CATATTACACAATCGTTCGTATTCAGGTTCTTCA 2352984 32 100.0 36 NNNNNNNNNN ................................ CATTTCCAACGGACTTTGTGACGGCTTTTATGCCAT 2353052 32 100.0 33 NNNNNNNNNN ................................ TTCACCGGGGACTACACCTTTGAGGTGACACTG 2353117 32 100.0 33 NNNNNNNNNN ........A....................... ACATAACGCCGGAACAGTGGGAACAGCTAAAGA 2353182 32 100.0 34 NNNNNNNNNN ........A....................... AATGGGTGATGGCTATCAAGAGGTGCAGGAAGTA 2353248 32 100.0 35 NNNNNNNNNN ..........................C..... GTCGTTAAAAGCCACGGAATATAAGTTAAGCATTG 2353315 32 100.0 33 NNNNNNNNNN ................................ AATTATATTCCAGATGAGTTTAAGTCGTACATT 2353380 32 100.0 33 NNNNNNNNNN ................................ TATGACATCAGACGAGACCGGCATGGTGGCTAT 2353445 32 100.0 34 NNNNNNNNNN ................................ ACTGATGAATGGCTGTATGATGAAGAATATTTGA 2353511 32 100.0 35 NNNNNNNNNN ................................ TTTAGCCTTGACAAGCCAAAACACAAGACAATTTT 2353578 32 100.0 34 NNNNNNNNNN ................................ CATTTAACTAATGTCGTTTGATAAGCTGATATAT 2353644 32 100.0 33 NNNNNNNNNN ................................ GGTTCTGATACTAAACCAACTGCTGTTACTAAT 2353709 32 100.0 33 NNNNNNNNNN ................................ AAAAATGTCGTGTGTGGTTAAATAATCAGCGTA 2353774 32 100.0 35 NNNNNNNNNN ................................ ATTTTTGGGTAAAACATAAGGGCTATAATTTCTAT 2353841 32 100.0 33 NNNNNNNNNN ................................ AGACCGTCATGATCCGACAGACATATGTTATAT 2353906 32 100.0 35 NNNNNNNNNN ................................ GTGTATTGCTGCTCTTGTTTTCGGCTGATCCACAC 2353973 32 100.0 34 NNNNNNNNNN ................................ TCTTTTCACTGCGTAATAGCTTAAGAATTTTATC 2354039 32 100.0 34 NNNNNNNNNN ................................ GCTGTTGAGTTTTTCCAAGTTCGACAGAGCGAGA 2354105 32 100.0 36 NNNNNNNNNN ................................ GTTTCCCTGTCTTCCAATTTTTCGCCCGCACGATAT 2354173 32 100.0 34 NNNNNNNNNN ................................ CTGATAAATCTATTCTGTGGTCTCGGAGCATAAG 2354239 32 100.0 35 NNNNNNNNNN ................................ CGTCCTTGTTCGGAGTGGTTTAAGACTTTCTCGGT 2354306 32 100.0 35 NNNNNNNNNN ................................ GGACTGCTGTATTTTAAGCCGGCCTGGTGCAGTAA 2354373 32 100.0 36 NNNNNNNNNN ................................ AGTACTTGCCGTAACAATCGGCATCAAGGTATTCAA 2354441 32 100.0 1 NNNNNNNNNN ................................ NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 25 32 34 ATTTCAATCCACGCTCCCACGAGAGGAGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [9,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.70,-4.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [71.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [186,179] Score: 0/0.18 # # Final direction: R [0.37,5.55 Confidence: HIGH] >NC_012785 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 530300 30 100.0 37 AATATATACT .............................. TTTGGCAGCGGGGGTGGGAATTGAACCCACTGACCTA 530367 30 100.0 35 CACTGACCTA .............................. GTGTATGAGCCTTCATCATTGATGAAACTATTTGT 530432 30 100.0 37 AACTATTTGT .............................. TCCTTTTTATTTTACGTAAAACTTTATATTCTGACTG 530499 30 100.0 36 ATTCTGACTG .............................. TATTTTCGATGTCCGTAAAAGTACTACCAATAAATA 530565 30 100.0 35 CCAATAAATA .............................. AACACACTACTCACTCCTCGCACGCCGGACATAAA 530630 30 100.0 CGGACATAAA .............................. TAATGAACCTGTTGAGCTACCCGGGAAAGCGCCTG ========== ====== ====== ====== ========== ============================== 6 30 36 GTTTGGTAAGAACCAATGTGGTATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.00,-2.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [858,312] Score: 0.18/0.18 # # Final direction: F [0.45,0 Confidence: MEDIUM] >NC_012785 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 439744 29 100.0 39 CAAAAGCGAT ............................. CAATAAAAGGTGTTGATGTTAATTCCGGTTTTTGGAAAA 439812 29 100.0 39 TTTTGGAAAA ............................. ACTTCTGATGAATTTGCACGAGTCATCAATAACCTTAAA 439880 29 100.0 42 TAACCTTAAA ............................. CCTGTGATAACGAAGAGTTAAGCGCCTGGTACATTACTCTTA 439951 29 100.0 39 ATTACTCTTA ............................. CAATAAAAGGTGTTGATGTTAATTCCGGTTTTTGGAAAA 440019 29 100.0 39 TTTTGGAAAA ............................. ACTTCTGATGAATTTGCACGAGTCATCAATAACCTTAAA 440087 29 100.0 42 TAACCTTAAA ............................. CCTGTGATAACGAAGAGTTAAGCGCCTGGTACATTACTCTTA 440158 29 100.0 36 ATTACTCTTA ............................. CGCTATACTCGAAGGCATTGCACTCACCATTTTTTA 440223 29 100.0 37 CCATTTTTTA ............................. CTTGTTTTGGCACGCATATGCGTGCCATTTTTTTATG 440289 29 100.0 36 TTTTTTTATG ............................. CAGAGAACTACTTAAATTAGCCCGAAAAGAATTAAA 440354 29 100.0 38 AAGAATTAAA ............................. CTAACGTTCAAAGGAAAAGTAACAACCGAAAAAGTCGG 440421 29 100.0 36 AAAAAGTCGG ............................. CACCGCATGGCTAAGTTTCTTGGATGGAGAAAACAA 440486 29 100.0 36 GAGAAAACAA ............................. CACCGCATGGCTAAGTTTCTTGGATGGAGAAAACAA 440551 29 100.0 41 GAGAAAACAA ............................. CACCGAAAATATTGTGAAAAGAATCAGCTTTTCATAGACAC 440621 29 100.0 39 TCATAGACAC ............................. CTATATTGGTATACATGACTATATCATTTTGCATACAAA 440689 29 100.0 40 TGCATACAAA ............................. CAAGAATATCGAAACTAAATAAGTTGTTGGAAGCACAAAA 440758 29 100.0 39 AAGCACAAAA ............................. CGAAATAAAGAAAGGGAATGTTGACGCCAGATTGTTTCT 440826 29 100.0 38 GATTGTTTCT ............................. CTGTGCTGGAGGAAAATGTGGATTATGGTTACCCTGAT 440893 29 100.0 38 TTACCCTGAT ............................. CGGCGGTGAAGGTTTTAATAGCTTTCGCCTAGCATAAG 440960 29 100.0 39 CTAGCATAAG ............................. CGTAGCATTCATGCATGCGAAAAACTTTGACAACAAAAA 441028 29 100.0 40 ACAACAAAAA ............................. CTGGAACAATCTGACTTGCTACTTGAAGGTAGCGTAGTAA 441097 29 100.0 34 AGCGTAGTAA ............................. CTGAGACAGCTGAAGAAGCATGGAACAAGGTTAT 441160 29 100.0 40 ACAAGGTTAT ............................. CCAGTGAAATTAAAGGCTTTTGCTTTGAAATTTCCTGGAA 441229 29 100.0 38 TTTCCTGGAA ............................. CTTGAAATTTCCTGGAATGAATCAAAGAACACAAAAAA 441296 29 100.0 36 ACACAAAAAA ............................. CCAAGATGACGACGGCGACCTGATCGCCTGGTATCT 441361 29 100.0 36 CCTGGTATCT ............................. CTTGTATAAAAAAGGAATAGACATCTTTACTATCAA 441426 29 100.0 37 TTACTATCAA ............................. CGATAAATTTTCAATCACTCTCGAATTCCCGACACTC 441492 29 100.0 38 CCCGACACTC ............................. CGAGGTGGAAGGCATGAAGGTAAGCATTACAAAAGATA 441559 29 100.0 38 ACAAAAGATA ............................. CTACCGGAATTGCCAGCTGATACCAAAGAGGAAATACT 441626 29 100.0 37 AGGAAATACT ............................. CACTTCAACTGGATGCAAATTTACTGCGTCGAAGTCC 441692 29 100.0 42 GTCGAAGTCC ............................. CAGAACCAAACACTCCCTTAGGCCATGCCTGGTTAATTCCTA 441763 29 100.0 36 TTAATTCCTA ............................. CCTTCACTATGTGCTAAATGCGTCATAGCCAACAAA 441828 29 100.0 36 AGCCAACAAA ............................. CCGGAACCAAAAGGGAAATTAAGAAAAAATTCGTGC 441893 29 100.0 37 AAATTCGTGC ............................. CAAAAGAATTTAAGTTTTACGAGCATACCATAGAAAC 441959 29 100.0 39 CCATAGAAAC ............................. CAAAGAAATAGAAGAAGAAAAAGTTATAGAATTATTATC 442027 29 100.0 37 AATTATTATC ............................. CCCCGGGAACATGAGCTGTTCTCCGCCTACATCGTAC 442093 29 100.0 38 TACATCGTAC ............................. CAAAACTCTTTTGCCAAAGTCTTCACCTACAGCTAAGT 442160 29 100.0 35 ACAGCTAAGT ............................. CGGAAGTTTTGTAGTAAGTAAGCGCCCTTCACGGG 442224 29 100.0 CCTTCACGGG ............................. CAGTATATAT ========== ====== ====== ====== ========== ============================= 38 29 38 GTTTCCATACCACATTGGTTCTTTCCAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.07%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.00,-2.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [1001,1106] Score: 0/0.18 # # Final direction: R [0,0.27 Confidence: MEDIUM] >NC_012793 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 358937 30 100.0 36 GTTTTTTGGG .............................. TCAAGTGAAAAAATACGCTGGTTTCTTCCGTGTGAC 359003 30 100.0 40 TCCGTGTGAC .............................. TAGGTGATCTCTTCCTCGTATTGCTTTAGGATGTAAAGCA 359073 30 100.0 38 ATGTAAAGCA .............................. TGATGATAGCGTGAGATATTTTGAAGCAGGCGTCACTC 359141 30 100.0 37 GGCGTCACTC .............................. CACGGATACCGGTAGATACTTCTTTTCTAGTTTCTCC 359208 30 100.0 37 TAGTTTCTCC .............................. AGGTGCATCAAATGAAACAGTATTTTTGTCAGATTCG 359275 30 100.0 37 GTCAGATTCG .............................. ACTAAAATAAGAAAACCGAATCACCTTATGAAAAGTT 359342 30 100.0 38 ATGAAAAGTT .............................. GTCTTGGAATGGCATGATGATAGGGTGATTATAATGAA 359410 30 100.0 35 TTATAATGAA .............................. AAGAATTTCGCTTGATCGATGACAAGTGTACGTGT 359475 30 100.0 38 GTGTACGTGT .............................. GTCTTGGAATGGCATGATGATAGGGTGATTATAATGAA 359543 30 100.0 35 TTATAATGAA .............................. AAGAATTTCGCTTGATCGATGACAAGTGTACGTGT 359608 30 100.0 35 GTGTACGTGT .............................. ATTGAAATATAAAACATAAATATTGACTTAAACAA 359673 30 100.0 36 ACTTAAACAA .............................. CTCTTTTTGTTCTTGAAGCTGTTTCACATATGCTAG 359739 30 100.0 38 CATATGCTAG .............................. ATTTGATCCCCATCATATCACCTCTTTCGCAATGATGG 359807 30 100.0 37 GCAATGATGG .............................. ATAAAAGTCAACGAATAAATAAAACGAATAAATAAAA 359874 30 100.0 35 ATAAATAAAA .............................. CAAGAAAGGCAACGATGACGATGTTTGCTTCAATG 359939 30 100.0 37 TGCTTCAATG .............................. GTATTTCATTTTTATGTAGTTTTCCGCGATGTATTTT 360006 30 100.0 35 GATGTATTTT .............................. CAAATACTCTTAAATAACTCGCTAATCATATTGAA 360071 30 100.0 35 TCATATTGAA .............................. CATCGGGCATGGGAAGGTGTGAAAAATATTGCTGG 360136 30 100.0 35 ATATTGCTGG .............................. GCAAGCCATTTGACCGATTTGGCTTCATCTTCGCG 360201 30 100.0 36 CATCTTCGCG .............................. TCAATCTTTTTGGCGATCTTATCAATGTTTTCGTCA 360267 30 100.0 38 GTTTTCGTCA .............................. ATTTTTAACTCACTCAACTTGTTCGGCTCGCGCGTTTC 360335 30 100.0 38 CGCGCGTTTC .............................. AAAAAATGATTGCTTCATGTGACCATTACATAAATATT 360403 30 100.0 38 CATAAATATT .............................. CGAGATGATAATATTTCTAGTGTCAATTTTCCGATTAG 360471 30 100.0 36 TTCCGATTAG .............................. CGCAATTCGCCACTTTCAACAACAGCGCTAGATGCC 360537 30 100.0 39 GCTAGATGCC .............................. TGTTGAAACTCCTGCACCGCCGCATCCTTCTTGGCAGAA 360606 30 100.0 35 CTTGGCAGAA .............................. AAACGGGAAGTAATTCTGTGGAAATCTGACTCATC 360671 30 100.0 37 CTGACTCATC .............................. CAGCGACTTTTACAAGGTTAACGCCCTTCAAATACTC 360738 30 100.0 38 TCAAATACTC .............................. TTATAGCGAAGCGACCAATAATGGATATGATGGGGAAC 360806 30 100.0 38 GATGGGGAAC .............................. CCATCATCAGGTAGCAAGTTGCCATCTTGCTACGACAA 360874 30 100.0 36 GCTACGACAA .............................. GATTGGATGCTGGCAATAATTAAATCCTGTAACTCC 360940 30 100.0 37 CTGTAACTCC .............................. ACCCATACTTCTTCGCACTCACAGCACCACGAATATA 361007 30 100.0 37 CACGAATATA .............................. TATACTTCTTCAACCACTCGTACTGTCCGTTCTAATT 361074 30 100.0 36 CGTTCTAATT .............................. GCTCTTGCCAATAACGCGGCGCAAAAAGGGAATTTC 361140 30 100.0 36 AGGGAATTTC .............................. TTTGTTGAGCAAGAAGCTGTTGCTTTTGGGCAAGTA 361206 30 100.0 36 TGGGCAAGTA .............................. TCCTGATGGACATAGATCTTTCCGTCAATCAGTTTC 361272 30 100.0 AATCAGTTTC .............................. TAAAGGCGTAAGGCGTGCGCTTTCGTGAACTTTTTC ========== ====== ====== ====== ========== ============================== 36 30 36 GTTTGTATCTTAACTATGAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [184,425] Score: 0.18/0.18 # # Final direction: F [5.37,0.18 Confidence: HIGH] >NC_012793 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 348817 30 100.0 36 GTTTTTTGGG .............................. GACTTTTTCACTTCCTCCACGTAGCTGAATCGGATC 348883 30 100.0 38 GAATCGGATC .............................. TCTGTCCGGGATGTACTGAAGCATACGGTTGACGGCGC 348951 30 100.0 41 TTGACGGCGC .............................. GCTCATTGTGCATGTCACGGTCGCGTGCTTTCATGACTTCG 349022 30 100.0 36 CATGACTTCG .............................. TCATTTTCTCCGCGCCGAACAACTGACAACCTACCG 349088 30 100.0 40 CAACCTACCG .............................. CATTCGGAGGGCTGACGGATGATTAAACTAGACGATCTGA 349158 30 100.0 39 GACGATCTGA .............................. CGATCTCAAAAAAGGCGAGGAAACTGACTTGCATAAACA 349227 30 100.0 36 TGCATAAACA .............................. GTTGACGGCAAGGTGTTTCGTTGGGTTGTGCCCGAT 349293 30 100.0 40 TGTGCCCGAT .............................. AAGCAGGCAGGATTAGATGTTGAGTGCGGAACAGGTGCAC 349363 30 100.0 36 ACAGGTGCAC .............................. CTATCTCATCATACCGACTTTTAAGTTGTCGTACTC 349429 30 100.0 39 TGTCGTACTC .............................. CAACCGGTAACCCGAATAGTTGACGACCGGATGGCGATT 349498 30 100.0 37 GATGGCGATT .............................. CTCAAGACATCGAGGACATGCAGGAATTCGTGCAAAC 349565 30 100.0 35 TCGTGCAAAC .............................. ACGTCACCCGGCAGTCCGTCAGCAAAATCGTTTCG 349630 30 100.0 36 AATCGTTTCG .............................. CAGGGACAGATGTCCTAAATGTTGGAAGCTAATTTG 349696 30 100.0 39 AGCTAATTTG .............................. TCAATGTTTTCGTCATAACCGGACCGCAACCATGAACGT 349765 30 100.0 38 CCATGAACGT .............................. TCCGATGTCACGGGGACAGGAATTTCTCACGTTCCGGG 349833 30 100.0 35 ACGTTCCGGG .............................. CAAGAAATCAGAAGGCTTCAGGCGGATCGAAAAGC 349898 30 100.0 36 ATCGAAAAGC .............................. TATTTGTTGAGCTGCGCTTCTGTGTACTCGATTTCC 349964 30 100.0 36 CTCGATTTCC .............................. TTCCCCGCCTGCCGCGACCGCTTGGCCCCACTCTTG 350030 30 100.0 35 CCCACTCTTG .............................. AAATTCGCGCTTCGCTTCCACCGACACGATAGGCG 350095 30 100.0 ACGATAGGCG .............................. TAAATGAACG ========== ====== ====== ====== ========== ============================== 20 30 37 GTTTTTATCTTACCTATGAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.00,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [275,301] Score: 0/0.18 # # Final direction: F [5.37,0 Confidence: HIGH] >NC_012793 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 370553 30 100.0 37 CGTTTTTTGG .............................. AAGGGTTGAAAAAAGTGGTCAACGTCCAGCTTGATCC 370620 30 100.0 34 AGCTTGATCC .............................. ATAAACGAGCATTTTTGTGATGAAACGCATACCA 370684 30 100.0 38 ACGCATACCA .............................. ATGCGTAGGCGTTGACGATGGATTCCTTGATTGTGTCC 370752 30 100.0 34 GATTGTGTCC .............................. ACAGGCTTCATCGTGACATCCACACGAATGCCAC 370816 30 100.0 35 CGAATGCCAC .............................. TCTATATAGATAGCCATGTAATGCCCATAATGGTT 370881 30 100.0 36 CATAATGGTT .............................. ATACTGGCGCTCCACCGTTATCCATAATATTTTTGT 370947 30 100.0 39 ATATTTTTGT .............................. GAATGATGTTTAATGTTTTTTCTTGTTTAGTTAGTTTTA 371016 30 100.0 36 GTTAGTTTTA .............................. TAAGTATAACACGGGAGGGGTCCGAGTGGGAAAACG 371082 30 100.0 38 TGGGAAAACG .............................. TGTGTTCGAGGAACAATTTGCTGAGAGTGGGTACAAGA 371150 30 100.0 37 GGGTACAAGA .............................. ATATTGAAATCATTACCGTAGTGACTGCAAAGGGCGA 371217 30 100.0 36 CAAAGGGCGA .............................. CTTCCGAGAAGGTGCAAGTGATTGGGCAGGAAAAGC 371283 30 100.0 38 CAGGAAAAGC .............................. AGCTACACCTGCTAATGCTTTCCGCTTATTCATTTGAT 371351 30 100.0 40 TTCATTTGAT .............................. TTTCATCCGAATATTTCAGAAAATCTTTAATTGTTTTTAT 371421 30 100.0 TTGTTTTTAT .............................. ATCGCTGGAA ========== ====== ====== ====== ========== ============================== 14 30 36 GTTTTTATCTTACCTATGAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.00,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [65.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [173,346] Score: 0/0.18 # # Final direction: F [5.64,0 Confidence: HIGH] >NC_012785 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 719736 30 100.0 38 NNNNNNNNNN .............................. TTCCCCTCATTCTTTTAAAAAAACCACGCTGGTGGAGC 719804 30 100.0 35 NNNNNNNNNN .............................. ATCTGCCAAGATAAGTAAAGCTGTGCATTTGACTA 719869 30 100.0 35 NNNNNNNNNN .............................. AAAGGTATTATGAAACAGGCAGCGACCAAGCAATA 719934 30 100.0 33 NNNNNNNNNN .............................. TTCCACACAGCCTTTTTTTATCATTTTTTTCTG 719997 30 100.0 33 NNNNNNNNNN .............................. CTTCTTTTTGCACTTCATTGATAGCTTTGTCTA 720060 30 100.0 36 NNNNNNNNNN .............................. CACGAATTACCCAAAGAGGTGCATGCCTAATCTTCA 720126 30 100.0 34 NNNNNNNNNN .............................. CAGAAATAGATATGGAAGACGTCATAAATACAGT 720190 30 100.0 37 NNNNNNNNNN .............................. TCCTCCAGCTTCGCCGGAATAAAGACCCTCCCGTTTT 720257 30 100.0 38 NNNNNNNNNN .............................. TATTTAAGATGTCGAGAATAGATTTCAAGACATCCAGA 720325 30 100.0 37 NNNNNNNNNN .............................. GTCGATAACAAGTATGCGCTGGTCCCCGGTCAATTCC 720392 30 100.0 35 NNNNNNNNNN .............................. AAGTGCCATCGACAGCCTCTCTTGCAGGCGGTACA 720457 30 100.0 37 NNNNNNNNNN .............................. TTCTAGTGATAGGTCGACTCGAAATCGACCACAGAGA 720524 30 100.0 36 NNNNNNNNNN .............................. AGGTGTAGTTTTGTCATGCAGGCGTGGCGGAATTGG 720590 30 100.0 33 NNNNNNNNNN .............................. TGCCATCAACCAAAATAGAAAGTGTACCAGCGT 720653 30 100.0 38 NNNNNNNNNN .............................. AGCTATCCTCTCGCCTTTCTTGATTTTCTGCCCCTCAT 720721 30 100.0 36 NNNNNNNNNN .............................. ACCTGCAAGCCGGAACGAAAACGAAGAAGTGGGAGC 720787 30 100.0 37 NNNNNNNNNN .............................. TCGATAAGAGCTTCAAAAGACAGTGTTCTAAAATATC 720854 30 100.0 35 NNNNNNNNNN .............................. TACATTTTTCTCCATGTGTGTCAAAATGGCAAAAA 720919 30 100.0 37 NNNNNNNNNN .............................. ACCAGATGGGAAGAGCTAATGAAAGAAGGCGAAAAAG 720986 30 100.0 32 NNNNNNNNNN .............................. TACTGCTCCATGCTCTGGTTCCCATTGTTCCC 721048 30 100.0 39 NNNNNNNNNN .............................. TCGTATATTTGCGGCCAATTTTCCGATAGATAGGTTCTG 721117 30 100.0 33 NNNNNNNNNN .............................. TTGAAATATTGGGTACAAGACTGCAAAAATAGA 721180 30 100.0 36 NNNNNNNNNN .............................. CGAATAGCAACGGCCAATACAGCGAACAAACGAATA 721246 30 100.0 35 NNNNNNNNNN .............................. CAACTTCTCGAGAGGCTGCCAGAGGGTAAGATTCT 721311 30 100.0 35 NNNNNNNNNN .............................. TACTGCTTAACGGTGGTACTTGACCGTTGCGAATA 721376 30 100.0 33 NNNNNNNNNN .............................. TCGCATTTTCTTATTGCATTCTAATTACATGAA 721439 30 100.0 35 NNNNNNNNNN .............................. ACGCCAACCACGCCTTCAAATATTTCTTCGCTTGT 721504 30 100.0 35 NNNNNNNNNN .............................. CTAAGAATACCATTGAATGGTTAGATAACATTTTC 721569 30 100.0 35 NNNNNNNNNN .............................. CGGAAATGCGTGAAGATGTTGATTACCTCGGTTTC 721634 30 100.0 38 NNNNNNNNNN .............................. AATTTATCGAAAAACTTCGTAAGCGCACCAGCCGCCCA 721702 30 100.0 36 NNNNNNNNNN .............................. TTTGCCAACGTAGTTTTCCCAATCATCTGGAATTTC 721768 30 100.0 35 NNNNNNNNNN .............................. AAGCTATCTCAGAATCTTTTGGCAAGCAAGTTGTC 721833 30 100.0 34 NNNNNNNNNN .............................. TTTCCTTGTCTTCACCTTGATCATTTACAAGCTT 721897 30 100.0 34 NNNNNNNNNN .............................. TATCACCTTTAGCCGAATATAGTCTAATCCCATC 721961 30 100.0 34 NNNNNNNNNN .............................. TCGGTTTCCCGGGTCGAGGGTAATGCGCTCTCGC 722025 30 100.0 37 NNNNNNNNNN .............................. AAGAACTTCCGAAACATACGGAGTATGCCAGTATTCC 722092 30 100.0 35 NNNNNNNNNN .............................. TCCAGCATTCCTGCGGTATCTGCACCGAAGATGTA 722157 30 100.0 38 NNNNNNNNNN .............................. CCTCAAATCTTTTTCATACTCTCTGCGCGTTTTATCAA 722225 30 100.0 35 NNNNNNNNNN .............................. ATATATAGCATGAATTCCAACGCCATTATTTTGAG 722290 30 100.0 35 NNNNNNNNNN .............................. ACAAGATAATAGTCTACCCAGGCAGCTACATGAAA 722355 30 100.0 34 NNNNNNNNNN .............................. AAACTTTTGGGAGATATAATCCGTTGAACTTTAT 722419 30 100.0 34 NNNNNNNNNN .............................. TCCTTTAGAACACATGGGGCTCAAACGTCCGCGT 722483 30 100.0 36 NNNNNNNNNN .............................. AATACCTTTCCGCTTCCGCAGGATACTTTTCACTGC 722549 30 100.0 38 NNNNNNNNNN .............................. TTAACCATCTGGAAGCGTTATCGCTGTCAGACTCGATA 722617 30 100.0 34 NNNNNNNNNN .............................. CTCCTACCATAACCTTTCCACCATATCCAGCTAT 722681 30 100.0 35 NNNNNNNNNN .............................. ACTAGTATCATCTGATATAATTGCGATATTTTCAA 722746 30 100.0 36 NNNNNNNNNN .............................. GCAACTCCTCGCAGCGATAGCGATGGTTGAAAGTTC 722812 30 100.0 35 NNNNNNNNNN .............................. CAGTATTCTGATAACCCACGGTACTGACTATTTTC 722877 30 100.0 34 NNNNNNNNNN .............................. GACCTATACACGGGAATGTTGTGGCGTCTTTCGG 722941 30 100.0 35 NNNNNNNNNN .............................. AAGGCAATCACCCCCTTTGGTTCGTTTTTACTACC 723006 30 100.0 33 NNNNNNNNNN .............................. TCCATTTTACTGCTTTCGACGCCCCTGTTTTTA 723069 30 100.0 36 NNNNNNNNNN .............................. AGTGTTGGTAACAGTACGACCGCTTCTCAAGTATCT 723135 30 100.0 34 NNNNNNNNNN .............................. AACTACTAAATTTCGCTTTTTCATCTTATGCCTC 723199 30 100.0 34 NNNNNNNNNN .............................. TTCTGCTCTTGAGGGGAAAGCTCGTAAATCTTTA 723263 30 100.0 39 NNNNNNNNNN .............................. TGATTGATGGAGATCCTCAAAGCCACATGACTCATGCTC 723332 30 100.0 40 NNNNNNNNNN .............................. AGATAGGGCAGGATGCTGACGGCAACGGATACGTGCGAGC 723402 30 100.0 33 NNNNNNNNNN .............................. CTGCAACACCACCTCCCAATTTGACCATGTCAA 723465 30 100.0 37 NNNNNNNNNN .............................. TCGGTTTCTCGGGTCGAGGGTAATGCGCTCTCGCAAA 723532 30 100.0 34 NNNNNNNNNN .............................. ACTTCATCGTAGAAGCGTTTGTACAGCTCATTCC 723596 30 100.0 33 NNNNNNNNNN .............................. TTTTGTTTCTTTTCTATCTCGCTCATTCTCTCC 723659 30 100.0 34 NNNNNNNNNN .............................. GCGGATGCTTCCGCTTTCGTTGTCGGTGATTCTG 723723 30 100.0 34 NNNNNNNNNN .............................. TACGAAAAACTAAAGAAAAGGGGTGGGGAAAATG 723787 30 100.0 37 NNNNNNNNNN .............................. ATGAATTCCTTAAAGAAGTTAAGGAGGGAGAGGAAGA 723854 30 100.0 34 NNNNNNNNNN .............................. CTGCTGGTTCTACGTCTGATGCGATAGGGATATC 723918 30 100.0 35 NNNNNNNNNN .............................. TGTGCAAGCCACGCTCCGGTAGCGCTTCCAATCTG 723983 30 100.0 38 NNNNNNNNNN .............................. CTCGGAGAGATAGATATAGACTCGAAACTAAGCTATGA 724051 30 100.0 36 NNNNNNNNNN .............................. AAGGAAGCGCTAAGAGAATACATGGAAAAGCTTGAC 724117 30 100.0 35 NNNNNNNNNN ....................A......... TACCTTATTACTTTTGGAAGAGGAACAGCGGTATT 724182 30 100.0 36 NNNNNNNNNN .............................. CTACGTCTCCTTCTTCCATCTCAATCTTTATTCTTG 724248 30 100.0 37 NNNNNNNNNN .............................. TCGTACATGCCCTCCAAAATCTTCGCGAAGTTGTTCG 724315 30 100.0 34 NNNNNNNNNN .............................. CTCCTTCATGGGCATTCAAAATGCGGTCACGGTC 724379 30 100.0 37 NNNNNNNNNN .............................. GAAACTTCAGATTCTGAAAGGCCTGTTTCAAATGCTA 724446 30 100.0 34 NNNNNNNNNN .............................. CATTTTAGCTCCTGTTTTTATGATATGTGGTGCC 724510 30 100.0 34 NNNNNNNNNN .............................. TATGGCCTTCATATCCCAGTAACCCACATAACCG 724574 30 100.0 33 NNNNNNNNNN .............................. AAAACGATAGACGTTTATGCCTATCTCTATATT 724637 30 100.0 36 NNNNNNNNNN .............................. TTTGCCAACGTAGTTTTCCCAATCATCCGGAATTTC 724703 30 100.0 35 NNNNNNNNNN .............................. TATCGAATAAAGGTATAAAGCACCATGATTGCATA 724768 30 100.0 34 NNNNNNNNNN .............................. AGGGCATTGTTGCCCTCATGGAGGCAGCGAGGTA 724832 30 100.0 35 NNNNNNNNNN .............................. GGTAATTGAATGCGAGTACTCGCAAGGGTGGCGGG 724897 30 100.0 39 NNNNNNNNNN .............................. TTAAACAGACTCCGAAGTTATATGGATTTAGACCACCGG 724966 30 100.0 36 NNNNNNNNNN .............................. CACCTCTTGCTTCGCCAAGGGTTTCGTCGATATGCC 725032 30 100.0 38 NNNNNNNNNN .............................. TGAACCACACAGATGAGGGGCAGAAAATCAAGAAAGGC 725100 30 100.0 38 NNNNNNNNNN .............................. ATTTGATACTGAAACATTTCGAATTATTATTCTATAAA 725168 30 100.0 35 NNNNNNNNNN ............T................. TAAAAATGGCAATAATTTTGTTGCCGATCAGGTTT 725233 30 100.0 36 NNNNNNNNNN ....T...GT.......A...GC.A...G. GTACACCGTGATACCACTACTATTGACACTCTACCG 725299 30 100.0 1 NNNNNNNNNN ....T...GTC.T..G.AG..GGGA...GT NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 86 30 35 GTTTATAGAATACCTATGAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.00,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-24] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [357,835] Score: 0.18/0.18 # # Final direction: F [5.28,0.18 Confidence: HIGH] >NC_012793 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2059333 29 100.0 34 NNNNNNNNNN ...........TA.C.CACT.CG.TC..A TAAAACCTGTTTGGCTTGTTCTTTCTCGTATATG 2059396 29 100.0 38 NNNNNNNNNN ............................. AAATCAGTTCTTCATTAAATGACTATTTAAGAAAACAC 2059463 29 100.0 35 NNNNNNNNNN ............................. TCGCTTATTCCAGTTTATTATTTCAATTCCAACTG 2059527 29 100.0 37 NNNNNNNNNN ............................. AGAGTCCACAAAGTCGGGTTTCTCATCTATGATCAAT 2059593 29 100.0 35 NNNNNNNNNN ............................. GTTTTTATGTTGGTTATTGTTTATTGTTTTTATAT 2059657 29 100.0 39 NNNNNNNNNN ............................. TGACATTGATTTAGGTAAAGATGTTGCAAAAGTGTTTAG 2059725 29 100.0 36 NNNNNNNNNN ............................. ACATAGTTCACGAAGATATGTGGAGCTATGGAGATA 2059790 29 100.0 37 NNNNNNNNNN ............................. CAACAGACGGAGCCGGATCAATTCCAGGCGCAGCCAA 2059856 29 100.0 38 NNNNNNNNNN ............................. CCTTTTCCATGCGATCATTCATGGCAAGCCGATAGCAT 2059923 29 100.0 34 NNNNNNNNNN ............................. GGGAACAAGTTTGTTGTGAATCTCATTCATGCGA 2059986 29 100.0 35 NNNNNNNNNN ............................. GCGTGGGTGTGTCGAAGGTCATGGAATCGGATTTT 2060050 29 100.0 35 NNNNNNNNNN ............................. ACAGGCGTGCTTTGCGGTATCTCGGTCAAGATCAA 2060114 29 100.0 37 NNNNNNNNNN ............................. AAGACGGAAGCGCATCAATCGGCAAATTAGCCTTCCT 2060180 29 100.0 38 NNNNNNNNNN ............................. GGGATGTTCTCATTGCAAAAGATTTTGATGATAACCAA 2060247 29 100.0 38 NNNNNNNNNN ............................. GCCAAGCTCTTTCATCCGTTCAGCAATGTTCAATACAT 2060314 29 100.0 38 NNNNNNNNNN ............................. AAGCATCCTTTCTGAAATTGCCCGTATCGGTGGAGCTT 2060381 29 100.0 35 NNNNNNNNNN ............................. TAATTTACCCATCTACCAATCTCTTTATCAAAAAT 2060445 29 100.0 35 NNNNNNNNNN ............................. AAAAACGATTCTTCTACCGCCTTTTCATTCACCAT 2060509 29 100.0 39 NNNNNNNNNN ............................. TTGTAAAAACGATTCTTCTACCGCCTTTTCATTCACCAT 2060577 29 100.0 35 NNNNNNNNNN ............................. ACGATTTGTCCCAAATGACGATGGAGATATAGAGG 2060641 29 100.0 35 NNNNNNNNNN ............................. AAAAACGATTCTTCTACCGCCTTTTCATTCACCAT 2060705 29 100.0 39 NNNNNNNNNN ............................. TTGTAAAAACGATTCTTCTACCGCCTTTTCATTCACCAT 2060773 29 100.0 35 NNNNNNNNNN ............................. ACGATTTGTCCCAAATGACGATGGAGATATAGAGG 2060837 29 100.0 37 NNNNNNNNNN ............................. AGAATGTTTGTAGGATTGGATTTTCCGCCTTTATATA 2060903 29 100.0 36 NNNNNNNNNN ............................. GGGAAGTCGTATCATGCTCTTGAATTAGGTTTGCAG 2060968 29 100.0 37 NNNNNNNNNN ............................. GGGTAGATCAAGATTAGATATTTTGGATGTGAAAGAA 2061034 29 100.0 35 NNNNNNNNNN ............................. CGGCGCCGATTCCGATTGGGAATCCTGCGTTTGAG 2061098 29 100.0 34 NNNNNNNNNN ............................. ACTTTTCACGGCTATCTCGTGTCCGACGCTTCGC 2061161 29 100.0 35 NNNNNNNNNN ............................. GATTTCACGGATGAAGAGACTGGACAACGGAAGAC 2061225 29 100.0 35 NNNNNNNNNN ............................. GTTCCTGCTGTTTGGAACAATTTCTCTTTTTTAGG 2061289 29 100.0 35 NNNNNNNNNN ............................. TTTCATGAAGAAATGAAACGGCTAAAGAATTTGAA 2061353 29 100.0 35 NNNNNNNNNN ............................. GTTTCTGCTGCGAAAAAGGCTGGTATCGTTTTTGA 2061417 29 100.0 36 NNNNNNNNNN ............................. TGAGGGAACAGAAGATTTTATTCACTTTGGATAAAT 2061482 29 100.0 37 NNNNNNNNNN ............................. CGCCGATTTCTGAAACGTTTGCCTCATATGCGATCTG 2061548 29 100.0 36 NNNNNNNNNN ............................. TCTCCAGCAATCAGACTAGCAATTCGCCGCGCATGT 2061613 29 100.0 37 NNNNNNNNNN ............................. ATTTTGGTATAAGGTCGATTCTGAATCGGGTTACGAT 2061679 29 100.0 34 NNNNNNNNNN ............................. TGATCCTCAAAGTGTTATTGCCTGGCGACACCAC 2061742 29 100.0 37 NNNNNNNNNN ............................. CGGGCAGACGGGGTGAGCTTGGTCAATATCCTGTCAA 2061808 29 100.0 35 NNNNNNNNNN ............................. TTATCTCGAATAGCCTGTTTATTAGATTCAAACAC 2061872 29 100.0 34 NNNNNNNNNN ............................. GAATCTAGGCTATTTCTTAACTTATAAATTATCT 2061935 29 100.0 39 NNNNNNNNNN ............................. TAAAAGTTCAAACTTTACATCTTACAGTAAATTTGATTT 2062003 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 42 29 36 CTTTATATCCCACTACGTTCAGATAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.52%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [318,222] Score: 0/0.18 # # Final direction: R [0,0.41 Confidence: MEDIUM] >NC_012793 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 372878 29 100.0 36 GTCTGCGCTC ............................. CCAATACACCAGAAGGATATCGCCTAGTCGATCAAT 372943 29 100.0 40 GTCGATCAAT ............................. TATGATCGCGTCGTATAACTCATTTGCTAACTTCAAATAG 373012 29 96.6 CTTCAAATAG .................A........... TCGCGGTATACAACGCCAAAATC ========== ====== ====== ====== ========== ============================= 3 29 38 GTTTTTATCTTACCTATGAGGAATTGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.41%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.00,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [53.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [329,397] Score: 0/0.18 # # Final direction: F [5.78,0.27 Confidence: HIGH] >NC_012880 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 4159926 29 100.0 32 ATCAATTTGG ............................. AGTTTCTTTAACATCTGACGCCCCTTTCGTTA 4159987 29 100.0 32 CCTTTCGTTA ............................. TGAGATATCCGACATCTCGGCCACGAGTCACA 4160048 29 100.0 32 ACGAGTCACA ............................. AAAATAAAGCCGTGATGTCGCAATCATCACGG 4160109 29 100.0 32 ATCATCACGG ............................. CGCCTATTCTGTTTGTTTATAGTGCAAGCACT 4160170 29 100.0 32 TGCAAGCACT ............................. TCGGCACGACGCCTGTGTGGGGCGCTCCGTAT 4160231 29 100.0 32 CGCTCCGTAT ............................. CCGGCTGCCGCCAAAATTCTGATCGATGTAAT 4160292 29 100.0 32 TCGATGTAAT ............................. GGCGGTCAGTGGGTGGAAGATGCGCGTGAACA 4160353 29 100.0 32 CGCGTGAACA ............................. TTGCCGCACCAGAAACTATCCTGAGTCGCCCA 4160414 29 100.0 32 GAGTCGCCCA ............................. TTTCACGCCCGGCCTTCTCGACTAGCGCCTCA 4160475 29 100.0 32 TAGCGCCTCA ............................. CTGATATTCTATCATACTATGAGCAAAACACA 4160536 29 100.0 32 GCAAAACACA ............................. ACCAGCATCGGCGGCGGCGCTCATAACATTAC 4160597 29 100.0 32 ATAACATTAC ............................. CCTGTGGAATAACATGTTTTTACTTATTTATC 4160658 29 100.0 32 CTTATTTATC ............................. TTCCGTCTGCCGGTGGAGTCGGTGCCGGTACG 4160719 29 100.0 TGCCGGTACG ............................. TCTAAAAATA ========== ====== ====== ====== ========== ============================= 14 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [107,86] Score: 0/0.18 # # Final direction: R [0,1.51 Confidence: HIGH] >NC_012794 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 26792 25 100.0 41 NNNNNNNNNN CG.....T................. TGCTCTTCAAAAGCTCCATACGACGTTTACGGGGCTGTTTT 26858 25 100.0 44 NNNNNNNNNN ........G...T............ ACAACAAGGTGATTATGCAAAGGCGCAAGGAGATTATGCGTTTC 26927 25 100.0 40 NNNNNNNNNN ......................... TGCTCGTGTGGATGAAATTCACGGCACATCAAGTGGTTTC 26992 25 100.0 43 NNNNNNNNNN ......................... GAAAGCGTTCCATTCTTAATAGGACAAATTTTAAAATAGTTTC 27060 25 100.0 40 NNNNNNNNNN ......................... GAGTCTGAACGTCTAGAAGGGCTTATCTATAGCATGTTTC 27125 25 100.0 44 NNNNNNNNNN ......................... TCTGCTGGATAGATTTCTTTTGCTCTTCCTCCCAGCGATGTTTC 27194 25 100.0 1 NNNNNNNNNN ......................... NNNNNNNNNN ========== ====== ====== ====== ========== ========================= 7 25 42 AATTCCTCATAGGTAAGATAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [622,949] Score: 0/0.18 # # Final direction: R [0,0.41 Confidence: MEDIUM] >NC_012796 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1589785 32 100.0 36 GTAAGCGACA ................................ GTCTTGCCCACCCACACGCCATTGATCCAGACATCG 1589853 32 100.0 34 CCAGACATCG ................................ CGGGAACTCCAGCAGCACCGACGGGCAATCCGCG 1589919 32 100.0 34 GCAATCCGCG ................................ GACGACTGGGCCAAGCAGGTCGCCGCCGGCACCA 1589985 32 100.0 35 GCCGGCACCA ................................ CAGGCGGCCACGGAGGTGGTGGCGTAAATGGACAT 1590052 32 100.0 37 AAATGGACAT ................................ GACCTGGACGAGTACCAGGATTACGAAATGATCGGGG 1590121 32 100.0 34 ATGATCGGGG ................................ CCCCCATGCCGCCGCGCCTCCTTGACCAGATCAC 1590187 32 100.0 34 ACCAGATCAC ................................ CACGAACGGTAATTCCGGTCTCCAGACCATGCCA 1590253 32 100.0 35 GACCATGCCA ................................ CATGAGCTGGCCGGCCCCCAGCGGCGTGGACCCCT 1590320 32 100.0 35 GTGGACCCCT ................................ CAAGGGCAGCTCGCCGGAACCGACCGAGCCGGCGG 1590387 32 100.0 34 GAGCCGGCGG ................................ CGGCCGTGCCCGGCAGCGTCCCGGGGCAGGATTC 1590453 32 100.0 39 GGCAGGATTC ................................ CGGCTTTTGACGTTTGGAACTGTAGCCCCCTTGGCTTTA 1590524 32 100.0 35 CTTGGCTTTA ................................ CGGCTCCCCGGCCGGATCGGGCGAGGCCAGGAGTT 1590591 32 100.0 36 GCCAGGAGTT ................................ TGGGCCAACCCAAGCCAATGAAGAGTCTGACTTTCC 1590659 32 100.0 35 CTGACTTTCC ................................ TTTCCCCTGCCCTGGTACTTGTAGACCCAGCCGCC 1590726 32 100.0 34 CCCAGCCGCC ................................ TTGCCCTTGAGCAGCAGCCGACCCTTGATGACCG 1590792 32 100.0 36 TTGATGACCG ................................ CTGGATGCCGGTGACCACGCCGCCGGGGCTGTCGCA 1590860 32 96.9 36 GGCTGTCGCA ...............................T CAGTCGCACAGTGCCGCCGCCGGGGCCAATACGCCC 1590928 32 100.0 35 CAATACGCCC ................................ GATATGACCCCCGTCAAGGCCGCCCTGGCCCCGTA 1590995 32 100.0 35 TGGCCCCGTA ................................ ATCCTGACGATGGCCCACAATGACCATCTCCAGGA 1591062 32 100.0 35 ATCTCCAGGA ................................ CAAACGATTTGCTTGGTGCCGGAAAAATTGTGCGT 1591129 32 100.0 36 AATTGTGCGT ................................ CTTAAAGTCGTTGACGCTGGTGGTGGCGCACCACAT 1591197 32 100.0 35 CGCACCACAT ................................ CTCCGACGCAATCTCTGTCACCTACCGAAGCTCGT 1591264 32 100.0 35 CGAAGCTCGT ................................ ATCAGGATGTACAACAGGTCGGCAAACGCTTTTGG 1591331 32 100.0 34 ACGCTTTTGG ................................ GCGGCCAGGGTTGTGTCCACGCCAACAAACTCGC 1591397 32 100.0 34 ACAAACTCGC ................................ CTATCCAACTCGTCCAGGAGGCTGTCGGCCGCAA 1591463 32 100.0 36 TCGGCCGCAA ................................ AAACGTGTCCACGGCCTCGTCGTCGAAATTGCAGGC 1591531 32 100.0 34 AATTGCAGGC ................................ CCGGGATGCGCCACTCTCGTGGTCCCCGTCCACC 1591597 32 100.0 34 CCCGTCCACC ................................ TGCGTATTTACGTTGCCTGTTGAGGTGGAGGGCG 1591663 32 100.0 35 GTGGAGGGCG ................................ TACGTCAAAGACGCGTCCACGTCCTGGTTGGTGGC 1591730 32 100.0 35 GGTTGGTGGC ................................ GAGAACCAGCACGTCGGCAAGCCTTTCGTGAGCCG 1591797 32 100.0 TCGTGAGCCG ................................ GACAAGGCGT ========== ====== ====== ====== ========== ================================ 31 32 35 GTCGCCCCCTGCGCGGGGGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.90,-7.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [180,81] Score: 0.18/0.18 # # Final direction: F [5.05,0.64 Confidence: HIGH] >NC_012883 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1328782 30 100.0 36 NNNNNNNNNN .............................. TTACGTAGTTTTTGAGCCGTAGCAACTCTGTCCTTT 1328848 30 100.0 35 NNNNNNNNNN .............................. GTTTGTTTGCTTTCATCTTCGTAAAAACTTATGTA 1328913 30 100.0 37 NNNNNNNNNN .............................. ATTATAACGAAAAAGTATACAGACGTCTTTGTCGAGC 1328980 30 100.0 37 NNNNNNNNNN .............................. TTTCGCAAACTTCTTCTTATACAGTACCTGCCACCGC 1329047 30 100.0 36 NNNNNNNNNN .............................. ACAAATGAAACAACTTTCACTTGAAAAGATATTACT 1329113 30 100.0 36 NNNNNNNNNN .............................. TGGTAGTAATACAAGTACTTTTTATACGTTAATGCT 1329179 30 100.0 43 NNNNNNNNNN .............................. TTAATGAACCTGATAAGTATTCGTCTAATACGTGTGTAAATAG 1329252 30 100.0 36 NNNNNNNNNN .............................. ATGTACATCCAACTCCCCTGACACATCCTCATACCT 1329318 30 100.0 36 NNNNNNNNNN .............................. ATGCTTTCTCTTTGTGTCGGTGGTAGTGAAGTAATC 1329384 30 100.0 36 NNNNNNNNNN .............................. TTATAAAGGGAAATGCGTTAAACATTAATGCCCCTC 1329450 30 100.0 36 NNNNNNNNNN .............................. CATGTTACTATCACTCAACGTAAACCAGAGTAATAC 1329516 30 100.0 37 NNNNNNNNNN .............................. CCGTGTATGCTAAAATCTCTTTCATAACTTTTTTGAA 1329583 30 100.0 37 NNNNNNNNNN .............................. AGAGGTCATTATAGAATCCCCAAGGAGGGAGTGGAGA 1329650 30 100.0 38 NNNNNNNNNN .............................. GAAAGTCGTAGAGTGGAGGAATGGAAATGGCGCGGATG 1329718 30 100.0 37 NNNNNNNNNN .............................. CTGTTCTTGAGGTATGCTTCAAACTCTTCAAGTGTTA 1329785 30 100.0 36 NNNNNNNNNN .............................. TCAAATCAGAGCACTAGGGTGACAAGAAAAAATAGT 1329851 30 100.0 37 NNNNNNNNNN .............................. CAAAAACCTCTTTTTGGTTTTCTCCTCCTTATCATCA 1329918 30 100.0 37 NNNNNNNNNN .............................. TCTTAATTGCTCTTTGTTCTGCTTCTACCATCTTTTC 1329985 30 100.0 36 NNNNNNNNNN .............................. TGGGGTCTCCCAATACCACCATGCCAGCGGTGTGTA 1330051 30 100.0 36 NNNNNNNNNN .............................. ACAAGTCCTACAACTGGTATGTTGTTCCAAATTGTC 1330117 30 100.0 35 NNNNNNNNNN .............................. CTATTATACTACGCAATAGACTTCCTAGGCAGGGA 1330182 30 100.0 37 NNNNNNNNNN .............................. CAGGGTGAGGAATGATATCGATTTAGAGGCAGGCTTG 1330249 30 100.0 37 NNNNNNNNNN .............................. CATGGATGGTGGAAAATGAAGTGCCCGCGGCGGCGGA 1330316 30 100.0 37 NNNNNNNNNN .............................. TGACCACGGCGGTGCTTAAGCTTTCAAGGGTTATGCG 1330383 30 100.0 1 NNNNNNNNNN .....................T..ACTTTT NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 25 30 36 GTTCCAATAAGACTTTAAAAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:73.33%AT] # Reference repeat match suggestion: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 90% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [478,196] Score: 0.18/0.18 # # Final direction: F [5.59,0 Confidence: HIGH] >NC_012880 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 825456 28 100.0 32 NNNNNNNNNN G....G.AT...T..T............ GTCATCAATTCATGTACCGCCATCCCGCGATT 825516 28 100.0 32 NNNNNNNNNN ............................ GTAAGGGTGGACGGCAGTGCTCAGCCGATTGT 825576 28 100.0 32 NNNNNNNNNN ............................ GCATTCATTCGCGATTCACCTGCTCTACTGCG 825636 28 100.0 32 NNNNNNNNNN ............................ ATAAGGCCGTGCTGGTTGAGTCGCCGCAAAAA 825696 28 100.0 32 NNNNNNNNNN ............................ ATGCCACGGCTTGCACTGACAATCAGACTCGC 825756 28 100.0 32 NNNNNNNNNN ............................ GATATCACCTACGTTGACCAGATGACCGCACA 825816 28 100.0 33 NNNNNNNNNN ............................ TTGGTACGCTCACGCACAGATAGTGAGTAACGT 825877 28 100.0 32 NNNNNNNNNN ............................ ATTTGGTCATCGTCTTCGTAGTGACCGATATC 825937 28 100.0 32 NNNNNNNNNN ............................ AAAATGGTCAGCATGGAATTCTTATTGATATA 825997 28 100.0 32 NNNNNNNNNN ............................ GAAGCATGTAGTCAGTACAGAATGACCGTACC 826057 28 100.0 32 NNNNNNNNNN ............................ GCAATATAAGAAAAAGGATTCTATCGATGAAT 826117 28 100.0 32 NNNNNNNNNN ............................ AAACCGAGTTGTTATTGCGGTTGAACCGTCAT 826177 28 100.0 32 NNNNNNNNNN ............................ ATGCCTACATGCTTGGAGTGTGGATTGGGGAT 826237 28 100.0 32 NNNNNNNNNN ............................ ATGTTGTGCGGGCTTCTCGACACTAATGGTGA 826297 28 100.0 32 NNNNNNNNNN ............................ GCGCTCTGCAACTGAAGACGCTGGCTGGGAAA 826357 28 100.0 32 NNNNNNNNNN ............................ ATAAAACTGTGCTGGACGTGCCAGATTTCATC 826417 28 100.0 32 NNNNNNNNNN ............................ TCGGGCGCTCAATCCTGTTTATCGACCTTGAT 826477 28 100.0 32 NNNNNNNNNN ............................ AATAAAAAGAAGCCCCGACCTCAAAAGTGAGT 826537 28 100.0 32 NNNNNNNNNN ............................ CTCCACCCCACACAAAAGCCAGTAGAACTTAT 826597 28 100.0 32 NNNNNNNNNN ............................ ATGGCCTCTACCGTATACGTGCAGCGGGGGCG 826657 28 100.0 32 NNNNNNNNNN ............................ TTTGGTAAAGGGAAAACATATAACCCCATTAT 826717 28 100.0 32 NNNNNNNNNN ............................ TTAGCACGGCGGGACTTCGCATCGTTGCCGAT 826777 28 100.0 32 NNNNNNNNNN ............................ CGAGTCTTTTTAGCGGGTTTGTCTTCGGGGTC 826837 28 100.0 32 NNNNNNNNNN ............................ TAACGAACGCCGTAACACTCGCATCATCGATG 826897 28 100.0 32 NNNNNNNNNN ............................ TTGATCGGCTTTCTCGTCGTAAGCGCCCTCAC 826957 28 100.0 32 NNNNNNNNNN ............................ CAGTTGTTGGATAAGGCAACAAACCCGCCAAT 827017 28 100.0 32 NNNNNNNNNN ............................ CGCGTCTAGCTGGGCTGAACGGCGCAGCATTC 827077 28 100.0 33 NNNNNNNNNN ............................ AAATGGTGGCAACCGGCGAGCTTATTTTCACCG 827138 28 100.0 32 NNNNNNNNNN ............................ TTGCCGGAGAAGCAAAAGCGGCCAGTGCTATC 827198 28 100.0 32 NNNNNNNNNN ............................ GCCATGCCAGAGCAATTTGCAGTGCAGCCCCT 827258 28 100.0 32 NNNNNNNNNN ............................ GTCATGAATGATGGTCATCGTCTCTGCCTCCC 827318 28 100.0 32 NNNNNNNNNN ............................ GAATTCCGCATGACTGTGCGTCAGCTGGTCAT 827378 28 100.0 32 NNNNNNNNNN ............................ TTGTCCGCGCTGGTCTGTAGCTGAACGTTGAC 827438 28 100.0 32 NNNNNNNNNN ............................ ACCGTCCGCATCTCTGGCGATCGCCGCGGCAA 827498 28 100.0 32 NNNNNNNNNN ............................ GGTCAGCAGGCCGTTGAAGTCTGGCTGCACCT 827558 28 100.0 32 NNNNNNNNNN ............................ GCCGAGTTGTTCCGGCGCGCTGACGAACGAGC 827618 28 100.0 32 NNNNNNNNNN ............................ GGTGAGATTTGCCATTATGACAACCTCGCAGT 827678 28 100.0 32 NNNNNNNNNN ............................ GTGAGAAGGGCACGGAGTTGGAGCGCCACACA 827738 28 100.0 32 NNNNNNNNNN ............................ TAAGCGCTTCGATAGCTTCAAATATCTGTGAC 827798 28 100.0 32 NNNNNNNNNN ............................ ACGGCAGGCAAGGAAGCAGAATCGAAGTTTTT 827858 28 100.0 32 NNNNNNNNNN ............................ GCAGACTGCACCAGCACAGGCAAAACCGTCAT 827918 28 100.0 32 NNNNNNNNNN ............................ GGTCTGCTCCATGTTGAACTGGAACGGGATCA 827978 28 100.0 33 NNNNNNNNNN ............................ CAATGAACAGGCAAAAGACTTTGCCGGGACAAT 828039 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 44 28 32 TTTCTAAGCTGCCTACGCGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,7] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 92% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [159,132] Score: 0/0.18 # # Final direction: R [0,1.92 Confidence: HIGH] >NC_012796 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 4725897 28 100.0 32 TTTGCTTGAT ............................ TCGAAATGCGGGCAGTCCTGGGCGCTCTCAAT 4725957 28 100.0 32 CGCTCTCAAT ............................ TTGAGGCGGCGCACCTCGTTGCGGCGCTCGTT 4726017 28 100.0 32 GGCGCTCGTT ............................ GTCTTTTTCGGTCTATTCCTTGTGGCACTGGT 4726077 28 100.0 32 TGGCACTGGT ............................ GTAGCAAACCCGGAACTGGTGCTGCCGCCACA 4726137 28 100.0 33 TGCCGCCACA ............................ TTCATCCAAAAGCGCGCCGGTCCTCACTTTGTA 4726198 28 100.0 32 TCACTTTGTA ............................ TCGTCGATTACGATAAGGTCAAGCGACGGCAT 4726258 28 100.0 32 GCGACGGCAT ............................ GCCTCCAGCGCGGCGCGGTAGGTGGTGAGGGT 4726318 28 100.0 32 TGGTGAGGGT ............................ AACGCCCTTGAGGAAACCGTGGAACTCATCAT 4726378 28 100.0 32 AACTCATCAT ............................ GCCAAGTTCTTCGACCAGCAGGACGGCGAACA 4726438 28 100.0 32 ACGGCGAACA ............................ GGCAAGGCGTTGACCATCGTCAACGTGCAGCA 4726498 28 100.0 32 ACGTGCAGCA ............................ GCTACCGCCCAGGCCGCCGCAGATGCAGTGTC 4726558 28 100.0 ATGCAGTGTC ............................ TGGACACAAT ========== ====== ====== ====== ========== ============================ 12 28 32 TTTCTGAGCTGCCTATGCGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [43.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [619,129] Score: 0.18/0.18 # # Final direction: R [0.18,1.01 Confidence: HIGH] >NC_012804 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1221278 30 100.0 37 NNNNNNNNNN .............................. GGAGATTGGTCAACTCTGGCTTGACTGGAGGGCTGGT 1221345 30 100.0 36 NNNNNNNNNN .............................. CGCGTAAATGAGGGCCGGGTAATTCGCGAGATAAGC 1221411 30 100.0 37 NNNNNNNNNN .............................. ATACTCAAAGCCGGCCCCAACAGCCCCAAAATAATCA 1221478 30 100.0 37 NNNNNNNNNN .............................. CTGGATCTCCCACACGGCCTGGGCCTTCTCAACCTGC 1221545 30 100.0 37 NNNNNNNNNN .............................. TAGTTCTTAACGAAACTCCGCACCCTCCTCCTAACTC 1221612 30 100.0 38 NNNNNNNNNN .............................. TTGGGGTGCTCTACCTCGCTAGGACTGGCAAAAAGAGG 1221680 30 100.0 37 NNNNNNNNNN .............................. CTCATTGAATCCCTCTCAACCTCAAGGTACTCCTTCG 1221747 30 100.0 41 NNNNNNNNNN .............................. GACTTTGGTCGGGGCCCGCAAAGAGTATCCGAACCTCTCAA 1221818 30 100.0 37 NNNNNNNNNN .............................. TTAAGTGTTCATGAATTGATACTGGAAGTCGAAACAC 1221885 30 100.0 35 NNNNNNNNNN .............................. AAGCGTTGTTATTTGCCTCATGCCGATCCCCCCAT 1221950 30 100.0 37 NNNNNNNNNN .............................. TTTGTCGGGGACTACTTCGTAATGGCACACAACGGCT 1222017 30 100.0 37 NNNNNNNNNN .............................. AACTCGTAACTGAAGATGTTATAGTTGCTTCTATCGT 1222084 30 100.0 38 NNNNNNNNNN .............................. GAGTTGGTCGTGTGGGTTGGGGTTATCAGTGCATGCTT 1222152 30 100.0 38 NNNNNNNNNN .............................. TTCTTCTATGACGTATTTATTGATTTTACTGATTATTG 1222220 30 100.0 36 NNNNNNNNNN .............................. GAGCGAGGTTGGGCATCTCCTCAGCGACGGGAGTGG 1222286 30 100.0 36 NNNNNNNNNN .............................. AAGAGTGCACAAAAGAATACATTTCAACTAAAGAAC 1222352 30 100.0 37 NNNNNNNNNN .............................. AACAAAAAACGTGTTTGACTTCCCGGCCTTTACTTTT 1222419 30 100.0 38 NNNNNNNNNN .............................. CCTAATGGCCCCGGTGGTCGGGGCCGCCGACCAAAGCA 1222487 30 100.0 36 NNNNNNNNNN .............................. ACGGGAGCACGGCGGAGATCGAGTACACGGTCAAGG 1222553 30 100.0 37 NNNNNNNNNN .............................. GGTTGAACGTCACGAACTGGCTCAGGCCTTCGTACAG 1222620 30 100.0 39 NNNNNNNNNN .............................. CGGAACAATAATCGGCGAAAAACCACTTTATCTTATCGA 1222689 30 100.0 1 NNNNNNNNNN ...............A.AA.....C..... NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 22 30 37 GTTGCAATAAGACTCTAGGAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.60,-1.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [516,268] Score: 0/0.18 # # Final direction: F [4.91,0.37 Confidence: HIGH] >NC_012804 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 208439 30 96.7 35 CAGCAATTCT ...........-.................. CTTCGAGTTTAAGCACTTAGTCAAGTCTAAAAAAG 208504 30 100.0 37 TCTAAAAAAG .............................. TACGCGCTACTACTGATGAGGAAGGTAGCAGAACTCC 208571 30 96.7 38 GCAGAACTCC ...........-.................. GGGAAATATACGTCGATATTGACGCTTATAGGGAAAGC 208639 30 100.0 38 TAGGGAAAGC .............................. CTGGGTTGGCTGGTCTTCGGCATTGCCCTCATCGGCCT 208707 30 100.0 38 TCATCGGCCT .............................. AGGCCGTCCCCGACGCATGCATGGCATCCGCCGGATCC 208775 30 100.0 39 CGCCGGATCC .............................. CTTGTCCGTACTTCTTCGCGTAAATTCTGCTCGCCTTTT 208844 30 100.0 36 CTCGCCTTTT .............................. TTGCCCGGCGGGGTTCACATCTTCTATTTGGGTTTC 208910 30 100.0 TTTGGGTTTC .............................. AGGGCGCGAA ========== ====== ====== ====== ========== ============================== 8 30 37 CTTTCAATTCTCCTAGAGTCTTATTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.10,-0.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [328,480] Score: 0/0.18 # # Final direction: R [0.37,4.91 Confidence: HIGH] >NC_012880 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 836654 28 100.0 32 NNNNNNNNNN ............................ ATTTTTCGGCGCCATGAGTCCAGCCGGTAAAT 836714 28 100.0 32 NNNNNNNNNN ............................ AGGATGTCGGCCTGAGCAAACCGAACACCGGA 836774 28 100.0 32 NNNNNNNNNN ............................ ACCGGGCGCCAGCAGCAAACCTTTCACCGAAC 836834 28 100.0 32 NNNNNNNNNN ............................ GCGATCTCTCGTCTGGTACTTCGTTGGATATC 836894 28 100.0 32 NNNNNNNNNN ............................ ACAGCAAGGCATGGACGCAGTGCGGGCCATGA 836954 28 100.0 32 NNNNNNNNNN ............................ ATGACGGTTCAACCGCAATAACAACTCGGTTT 837014 28 100.0 32 NNNNNNNNNN ............................ ATCTGGTCAATCTCGGCAAGGCGTTGCAGGAC 837074 28 100.0 32 NNNNNNNNNN ............................ AAAGATCGTGTTCATTTTGAATGGTTTGGGCC 837134 28 100.0 32 NNNNNNNNNN ............................ TAACGGCAAGATCGATAAGATTATCGAGTTGC 837194 28 100.0 32 NNNNNNNNNN ............................ TCTTCGAATCCCTGCTTGAGCGATGAAAGCAA 837254 28 100.0 32 NNNNNNNNNN ............................ TGGCACGACAGCAGGAGATGCAAACAGGGAGG 837314 28 100.0 32 NNNNNNNNNN ............................ AGCCCAAAGCATCGCGGAAAATGGCATCAAAC 837374 28 100.0 32 NNNNNNNNNN ............................ GTGGTCTGAGCACAATACAGAAGCGTTCGCCG 837434 28 100.0 32 NNNNNNNNNN ............................ AGGAATGTCTTTGCATCAGCCGGTCGAGGCGT 837494 28 100.0 32 NNNNNNNNNN ............................ CATCACAATTTACGCTGGGGAGGTGATATGGA 837554 28 100.0 32 NNNNNNNNNN ............................ TGCAAAATGACTTCATTGTCTGGCCTGCAACC 837614 28 100.0 32 NNNNNNNNNN ............................ GAGCGTGCTCAGCAAATCAGACAGGGAATGAA 837674 28 100.0 32 NNNNNNNNNN ............................ GAAATCATATGGGTGGCATTCGGGAACCCGAC 837734 28 100.0 32 NNNNNNNNNN ............................ AATGTGTCAGGCGTTACCGTCGGCACTGGCTG 837794 28 100.0 32 NNNNNNNNNN ............................ TTGATGAGGTGACTTTTGATGGCGTGGCAGAT 837854 28 100.0 32 NNNNNNNNNN ............................ AATCTCTTTGTTTGGGCCACGCTTTTCGGGTA 837914 28 100.0 33 NNNNNNNNNN ............................ GCAGATGCTAAACAAGCGCGGCGAGATGTACAA 837975 28 100.0 32 NNNNNNNNNN ............................ TTATCGCCTACAAACCAACGGCAACCATCCTG 838035 28 100.0 32 NNNNNNNNNN ............................ ACCATACAGAACACTCGCGGCAGATGGCTTAT 838095 28 100.0 32 NNNNNNNNNN ............................ AGTCTCGACGCCCAATCCTGCGCCAGCGCATT 838155 28 100.0 32 NNNNNNNNNN ............................ TCTTTCAGCATCGATTCCTGCCACTTGCGCGG 838215 28 100.0 32 NNNNNNNNNN ............................ AGGTCAGCGAAGGAGACAGTGATCAGCCTGCC 838275 28 100.0 32 NNNNNNNNNN ............................ CAAACACCTCGCGCCCCAGCACATTCTGCATA 838335 28 100.0 32 NNNNNNNNNN ............................ GTTACACCAAGTTTGGAAAGCTTTTCAAATAT 838395 28 100.0 32 NNNNNNNNNN ............................ TGTGGCACTGGAATATGAGAATCAATCACTTA 838455 28 100.0 32 NNNNNNNNNN ............................ AGCAGATCACGGCGGTAGAGGTCGTACCCTGT 838515 28 100.0 32 NNNNNNNNNN ............................ AACCATCAACGGCGCTGGGGCCAGCGTTATAA 838575 28 100.0 32 NNNNNNNNNN ............................ CAGTGGGTGCAGCCATCGCGATCTGTTGCTTT 838635 28 100.0 32 NNNNNNNNNN ............................ AGTGGATAGAAGCGTTTTAAAAACTCTTCACG 838695 28 100.0 32 NNNNNNNNNN ............................ AGTCTCGACGCCCAATCCTGCGCCAGCGCATT 838755 28 100.0 32 NNNNNNNNNN ............................ CGTTTGAAAGGCAATCTGCCGCCTAAATTCTT 838815 28 100.0 32 NNNNNNNNNN ............................ TGTTACTCAAAAATTGCTGGGGCTACAGTATC 838875 28 100.0 32 NNNNNNNNNN ............................ GTAGCGAGCACACAGAAACTAGTGATAAGCGC 838935 28 100.0 32 NNNNNNNNNN ............................ CTGAGGACTATGTGGAGTCTCTTCGGGCCACC 838995 28 100.0 32 NNNNNNNNNN ............................ TGTTGGCGGATGAAGACTTGCCCGACGAGGCG 839055 28 100.0 32 NNNNNNNNNN ............................ AATGCGTATGGCGTGAGCATGATTTCAGTAGA 839115 28 100.0 32 NNNNNNNNNN ............................ GCGAACCAAAAAGAAATGTCCATCTTGCGGTA 839175 28 100.0 32 NNNNNNNNNN ............................ GTAACCGCCAGGTGCCAGATACTTACGTAGCG 839235 28 100.0 32 NNNNNNNNNN ............................ GCAACCCTGGAAAGAAGGGGAACCCAAAACTC 839295 28 100.0 32 NNNNNNNNNN ............................ TGAGTACTGCCAGTCTATTGTTGAATATTTCT 839355 28 100.0 32 NNNNNNNNNN ............................ AAGGGGGCGCGCTTAGCTCTCGCTATCAACAC 839415 28 100.0 32 NNNNNNNNNN ............................ GCCGCCGCCGGAAGTGATGCAGGGTATGCCGC 839475 28 100.0 32 NNNNNNNNNN ............................ AAAAGAGGATGTGAAAGACAGGATAGGGCGCT 839535 28 100.0 32 NNNNNNNNNN ............................ CGAAGCGCTCAGCCGTGCGGAAGTTGACGGAA 839595 28 100.0 32 NNNNNNNNNN ............................ ATTGCTTCCACCGCCCAACATATTGTCCTCAG 839655 28 100.0 32 NNNNNNNNNN ............................ TGTCAGCGCCTTAAGGTATTGGTTAGCACCGT 839715 28 100.0 32 NNNNNNNNNN ............................ TAATTCCATGCCTCTCAAATGCTTCGATAGAT 839775 28 100.0 32 NNNNNNNNNN ............................ GATCTGCTCGACATTCCAGCAGATGAAGTAAA 839835 28 100.0 32 NNNNNNNNNN ............................ ATCGCCAATGGATTTAAGCCCGGTGCCGTAGC 839895 28 100.0 32 NNNNNNNNNN ............................ GTTGTGGTGGTCACCGGCTGGATCTCCATCAA 839955 28 100.0 32 NNNNNNNNNN ............................ TTATCGCGGTTTTCAGCAAGCCATTCATCGAT 840015 28 100.0 32 NNNNNNNNNN ............................ ACGACAGATGCGGCGGGGAACTGCTCGTCATC 840075 28 100.0 32 NNNNNNNNNN ............................ GTAGCGAAGAACGCCTTCGAGCAATATCAGAA 840135 28 100.0 32 NNNNNNNNNN ............................ GATTTATGTCAGGGTTTTGCAACACTCCAGCG 840195 28 100.0 32 NNNNNNNNNN ............................ AGGCACGACCGCGACGCACGATAGCGTCAGCA 840255 28 100.0 32 NNNNNNNNNN ............................ ACCTGCTGAACTTTGTCAGGCTGGCTGGCTGT 840315 28 100.0 1 NNNNNNNNNN ..........................G. NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 62 28 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 92% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [53.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [300,205] Score: 0/0.18 # # Final direction: F [1.92,0 Confidence: HIGH] >NC_012804 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1857022 30 100.0 44 ATAAACTCCT .............................. TCTACGTCGACGTGAACCTCGACAACCACCCGCCCTCGGCCCCC 1857096 30 100.0 37 CTCGGCCCCC .............................. CCGGAACATACATCCAGAGCTACGACGCCTACGTGGC 1857163 30 100.0 42 CCTACGTGGC .............................. CGGGGACGACTGTAAACGTGAATGACTTGCTAAATATCATTA 1857235 30 100.0 43 AATATCATTA .............................. GTGCCCGTCATCGTGGCGGAGGACTTAACCCCTGCTCAAGCGA 1857308 30 100.0 41 GCTCAAGCGA .............................. CTTGATCCAGCCGCACATGAGTGTTCTTGACAGGGAGAAAC 1857379 30 100.0 38 AGGGAGAAAC .............................. CTGCTCTTCATCAGCGACGTTCTCGACGAGGCCGAACT 1857447 30 100.0 39 AGGCCGAACT .............................. TTCAGGTGGGTGCAAAACGTTTACCTCGATGCCAAAGCC 1857516 30 100.0 39 TGCCAAAGCC .............................. GTGCTGACGCTGACTGAGGGCTCTGTTGGGGCGTACTTG 1857585 30 100.0 37 GGCGTACTTG .............................. TAACCGGGGTCACCCTCCACGTAGACGGCGCCTCTTA 1857652 30 100.0 37 GCGCCTCTTA .............................. AGGGCCGTCGATTCCGAAGGTTACTCGGGCGAGACGA 1857719 30 100.0 36 GGCGAGACGA .............................. CGGCTACTGGAGCGTTACGAAGACGGTTGACGTCCA 1857785 30 100.0 TTGACGTCCA .............................. AGGGCGTGAA ========== ====== ====== ====== ========== ============================== 12 30 39 CTTTCAATTCTCCTAGAGTCTTATTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.10,-0.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [53,455] Score: 0.18/0.18 # # Final direction: R [0.37,4.68 Confidence: HIGH] >NC_012892 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2717662 29 100.0 32 CCAGTGCGCC ............................. AGTGCTGGACCATTTCAAATTCACAATAGATT 2717723 29 96.6 32 ACAATAGATT .................T........... GGAATGATATTTCAATAAATAATTATAACAAT 2717784 29 100.0 32 TTATAACAAT ............................. CCCTCACACCGATTCGCCAAACGGTGGAGAAG 2717845 29 100.0 32 GGTGGAGAAG ............................. AGCTGGGCGAAATTTTGATTCATCGTGATGAC 2717906 29 100.0 TCGTGATGAC ............................. CCTGAACGGT ========== ====== ====== ====== ========== ============================= 5 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [40.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [83,79] Score: 0/0.18 # # Final direction: R [0,1.92 Confidence: HIGH] >NC_012892 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2736168 29 100.0 32 NNNNNNNNNN T..........................T. GACAGAACGGCCTCAGTAGTCTCGTCAGGCTC 2736229 29 100.0 33 NNNNNNNNNN ............................. ACACGCCCTTATCAAATAGCTGTGATTTACCTA 2736291 29 100.0 32 NNNNNNNNNN ............................. ATAGACCCCGAACAACAATACGCGCAAACCGA 2736352 29 100.0 32 NNNNNNNNNN ............................. TACCGTACAGACTGCCGGATATTATTTTTTTG 2736413 29 100.0 32 NNNNNNNNNN ............................. CTGCTGCTCGAGCTGGTGGAGTGCTGCTATAG 2736474 29 100.0 32 NNNNNNNNNN ............................. AACGTCAGGTTGTCGCCGCTCTGCGTGGTCGC 2736535 29 100.0 32 NNNNNNNNNN ............................. TGCATGGCTTTGGCTTCCTCTTTGACGGACGC 2736596 29 100.0 32 NNNNNNNNNN ............................. ATATATCAGAGCAAAAAACAAAGCCACAGCCA 2736657 29 100.0 32 NNNNNNNNNN ............................. CATAAAGAAACTATTTTGCGTTTCGTTCAGGT 2736718 29 100.0 32 NNNNNNNNNN ...............A..A.......... TTTTACAGTGTCAACAATCGTTCCCTGATTGT 2736779 29 100.0 32 NNNNNNNNNN ............................. CCGCCGTTGGCACCGTCAAACTCCGGTACTGT 2736840 29 100.0 32 NNNNNNNNNN ............................. TATAGAGATCGTTTTTGGAATTTACAGCGAGG 2736901 29 100.0 32 NNNNNNNNNN ............................. CCGTAAGTGGTTTGAGCGATGATATTTGTGCT 2736962 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 14 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [640,341] Score: 0/0.18 # # Final direction: R [0,1.65 Confidence: HIGH] >NC_012815 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1511547 36 100.0 35 NNNNNNNNNN T.....................A.A........... GCCTCCTGATGGATCTCCACGACGTTGCTGGCCCT 1511618 36 100.0 35 NNNNNNNNNN T................................... GCCATCCCGACTGTGGCGGCGGCGTTCGGTGTCGC 1511689 36 100.0 36 NNNNNNNNNN .................................... GACAGTGCGAACACAGTGCAGTCGGTGACGATCGCG 1511761 36 100.0 36 NNNNNNNNNN .................................... TCGGTCTTCTTGAGCTGGTCGGTGAGTGTCTTGAGC 1511833 36 100.0 36 NNNNNNNNNN .................................... GCAACGCCTTCGTTCGCCTCGTGGACTATCGCGGCC 1511905 36 100.0 39 NNNNNNNNNN .................................... CAGGTTCTCGAGGATGCTCACTATTTCCGTGAGGATGAT 1511980 36 100.0 38 NNNNNNNNNN .................................... CTATACCCGTATGCAATGCTGTGCGCGTTGGATGCAAG 1512054 36 100.0 36 NNNNNNNNNN .................................... TGGCGCGAGCAGTATCACCACGTGGCTGCTCAACCG 1512126 36 100.0 36 NNNNNNNNNN .................................... AACGGTTCGATGGTTCGCACAGTGAGTTGTTCACTC 1512198 36 100.0 35 NNNNNNNNNN .................................... TTCGTCTCCTCCCTGCGCCGCTGATTGACCTGTTT 1512269 36 100.0 34 NNNNNNNNNN .................................... ATTTCAGGCGGCATCAGACCTTGCGGCTGGGATT 1512339 36 100.0 38 NNNNNNNNNN .................................... GCGTGTGGTGGAAAAACCAGCCCGTCACCGAAGCGGCC 1512413 36 100.0 34 NNNNNNNNNN .................................... TCGCAGGTGAATATCGGTGGCGGCGGCTTGTCGT 1512483 36 100.0 34 NNNNNNNNNN .................................... CGGATAGTATCCTGCGTCGCGTCTCCAATGGCGA 1512553 36 100.0 38 NNNNNNNNNN .................................... CTGACAGCATCCTCTCATTCCTCTCGAACGGCGAATAC 1512627 36 100.0 34 NNNNNNNNNN .................................... TGTTCGCTTTGATGCGTGTGATTGAGTTCGGCTT 1512697 36 100.0 39 NNNNNNNNNN .................................... TTCGGCGCGTGTTCCTCCGCCGTTGCCGTTGTGGTGGGC 1512772 36 100.0 35 NNNNNNNNNN .................................... GAGGTCATGGTGAAGTCGCGTTCGGTGCCGGTCTT 1512843 36 100.0 37 NNNNNNNNNN .................................... CCGCCTCCCACTCCGCCACGCTGAGCGCCATATCGTC 1512916 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 20 36 36 CCCTCAATGAAGCTCCGAAGCCGAGACTTCGGAGAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [10,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.30,-7.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [65.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [171,181] Score: 0/0.18 # # Final direction: R [0.64,0.78 Confidence: LOW] >NC_012814 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1511616 36 91.7 35 GGAGTACATT -.....................A.A........... GCCTCCTGATGGATCTCCACGACGTTGCTGGCCCT 1511687 36 97.2 35 TGCTGGCCCT T................................... GCCATCCCGACTGTGGCGGCGGCGTTCGGTGTCGC 1511758 36 100.0 36 TCGGTGTCGC .................................... GACAGTGCGAACACAGTGCAGTCGGTGACGATCGCG 1511830 36 100.0 36 GACGATCGCG .................................... TCGGTCTTCTTGAGCTGGTCGGTGAGTGTCTTGAGC 1511902 36 100.0 36 TGTCTTGAGC .................................... GCAACGCCTTCGTTCGCCTCGTGGACTATCGCGGCC 1511974 36 100.0 39 TATCGCGGCC .................................... CAGGTTCTCGAGGATGCTCACTATTTCCGTGAGGATGAT 1512049 36 100.0 38 TGAGGATGAT .................................... CTATACCCGTATGCAATGCTGTGCGCGTTGGATGCAAG 1512123 36 100.0 36 TGGATGCAAG .................................... TGGCGCGAGCAGTATCACCACGTGGCTGCTCAACCG 1512195 36 100.0 36 TGCTCAACCG .................................... AACGGTTCGATGGTTCGCACAGTGAGTTGTTCACTC 1512267 36 100.0 35 TTGTTCACTC .................................... TTCGTCTCCTCCCTGCGCCGCTGATTGACCTGTTT 1512338 36 100.0 35 TGACCTGTTT .................................... GTGATCCCACGTGACGAATCATGGGCCGAGGGATT 1512409 36 100.0 35 CCGAGGGATT .................................... GTCTCATCAGCGGCGCCACGGGTATCAATCTCAAT 1512480 36 100.0 36 CAATCTCAAT .................................... CCATTCCACCGTTTCGGCGTATTCGCACCACCAGTG 1512552 36 100.0 34 ACCACCAGTG .................................... ATTTCAGGCGGCATCAGACCTTGCGGCTGGGATT 1512622 36 100.0 38 GGCTGGGATT .................................... GCGTGTGGTGGAAAAACCAGCCCGTCACCGAAGCGGCC 1512696 36 100.0 34 CGAAGCGGCC .................................... TCGCAGGTGAATATCGGTGGCGGCGGCTTGTCGT 1512766 36 100.0 34 GGCTTGTCGT .................................... CGGATAGTATCCTGCGTCGCGTCTCCAATGGCGA 1512836 36 100.0 38 CCAATGGCGA .................................... CTGACAGCATCCTCTCATTCCTCTCGAACGGCGAATAC 1512910 36 100.0 34 CGGCGAATAC .................................... TGTTCGCTTTGATGCGTGTGATTGAGTTCGGCTT 1512980 36 100.0 39 AGTTCGGCTT .................................... TTCGGCGCGTGTTCCTCCGCCGTTGCCGTTGTGGTGGGC 1513055 36 100.0 35 TGTGGTGGGC .................................... GAGGTCATGGTGAAGTCGCGTTCGGTGCCGGTCTT 1513126 36 100.0 37 TGCCGGTCTT .................................... CCGCCTCCCACTCCGCCACGCTGAGCGCCATATCGTC 1513199 36 100.0 CCATATCGTC .................................... AGTAGCCATA ========== ====== ====== ====== ========== ==================================== 23 36 35 CCCTCAATGAAGCTCCGAAGCCGAGACTTCGGAGAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [10,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.30,-7.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [172,180] Score: 0/0.18 # # Final direction: R [0.64,0.78 Confidence: LOW] >NC_012891 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1173568 36 100.0 30 NNNNNNNNNN .AA................................. ACAGTTAAATAGCTTTGGTATCTTGTCGAT 1173634 36 100.0 30 NNNNNNNNNN .................................... TCATCAAGGCTCTGCGCACCACCCAACGGA 1173700 36 100.0 30 NNNNNNNNNN .................................... GCCTTAGGAAACAAAGCATTTACACTACCA 1173766 36 100.0 30 NNNNNNNNNN .................................... AAAAGTGGCTATCACGCTGACACAGACTAA 1173832 36 100.0 30 NNNNNNNNNN .................................... AACACTGATTGTTCCAATTGTATTTGTAAA 1173898 36 100.0 30 NNNNNNNNNN .................................... GTCACGCTGATATATGTCACCCAAATATAG 1173964 36 100.0 32 NNNNNNNNNN .................................... ACGCTTTAGCAGATGGAGCGGGGCTTACGAGG 1174032 36 100.0 30 NNNNNNNNNN .................................... GCAAAAGCTTTCTCATATTTTACTCGATTC 1174098 36 100.0 30 NNNNNNNNNN .................................... AGTATTCCAGTTCTCCATCAAGTAGTTCTC 1174164 36 100.0 30 NNNNNNNNNN .................................... AATACAATCTCATGATTCGCAAACATCATG 1174230 36 100.0 30 NNNNNNNNNN .................................... CATATTCTATTAATCCTTTATTTAAAAAAT 1174296 36 100.0 30 NNNNNNNNNN .................................... GCAACAGTGTTTTCACGGTGGTTGCACGCC 1174362 36 100.0 30 NNNNNNNNNN .................................... AAGCATCATAGTAAACATATCTAGCACGCT 1174428 36 100.0 30 NNNNNNNNNN .................................... ATGCTCAAAAAGATGTGCTGTCCAACAGTA 1174494 36 100.0 30 NNNNNNNNNN .................................... AAAGACGGTTTTTACTTTCAAAAATGAGAT 1174560 36 100.0 30 NNNNNNNNNN .................................... ATGGTACAAGTAAAACTACCGCCCCAGTTA 1174626 36 100.0 30 NNNNNNNNNN .................................... CAGACTTGGAATTGGCCAATGAGCGTGCCG 1174692 36 100.0 30 NNNNNNNNNN .................................... TTCTGTCTAGCCCTTGTTCTTGACTCGTCT 1174758 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 19 36 30 GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.89%AT] # Reference repeat match suggestion: R [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 97% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [0.00,-2.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [117,104] Score: 0/0.18 # # Final direction: R [0,1.28 Confidence: HIGH] >NC_012912 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 810332 28 100.0 32 ATTCGCTACA ............................ GCCTCAACATCACACTGGAGCCACGCAAGGCC 810392 28 100.0 32 ACGCAAGGCC ............................ ACGGTCATTGATGACAAGTCATAAGCTTTTTC 810452 28 100.0 32 AAGCTTTTTC ............................ TGTCAACAAATCTTTTTTGAGTAAATCAGAGC 810512 28 100.0 32 AAATCAGAGC ............................ AAAGGTACCCACACGAATTTTGGCATCAAGAA 810572 28 100.0 32 GCATCAAGAA ............................ TTAGACGCCGCGCTGAAGCTACTGGAAGCGCT 810632 28 100.0 32 TGGAAGCGCT ............................ CGTCAGACGAAGGCGCTGGCCGATTTGGAGCA 810692 28 100.0 32 ATTTGGAGCA ............................ TTTGTTGGCAGGCTTTCTATCTGCTTATGCCT 810752 28 100.0 32 GCTTATGCCT ............................ GTAACGGATGCGGATGTGGTTCGTGTTCGTGT 810812 28 100.0 32 GTGTTCGTGT ............................ CGACTCCGTTCGCATCCGCAACAATTTTCAGA 810872 28 100.0 32 AATTTTCAGA ............................ ATTGCCGCACGTGGAGATGCCACCACGCCTTT 810932 28 100.0 32 CCACGCCTTT ............................ CTGAAAATGCCAAAGCATAGAGATGCCCCTTT 810992 28 100.0 32 ATGCCCCTTT ............................ CGTCGATCCCGTTAGCTTCCAGCGTCGCGCAC 811052 28 100.0 32 CGTCGCGCAC ............................ TACCAGCGTAAGTTGGTCATCCTGCAAATCGC 811112 28 100.0 32 TGCAAATCGC ............................ TGAAACCGACGAGAGTTGGGATGAAAAACGAT 811172 28 100.0 32 GAAAAACGAT ............................ GCTAATCCCTGCTGTTGCGAGAATCATGTAAA 811232 28 100.0 32 ATCATGTAAA ............................ TACAGCCTCAGCAATGCGCAGTTGTCCGGTAA 811292 28 100.0 32 TGTCCGGTAA ............................ AACTGATGAGTATCTCTTCTTCCCAGCTTCCC 811352 28 100.0 32 CCAGCTTCCC ............................ TGATTCTTGGCTTTCTTGTCGCCTTCGATCCA 811412 28 100.0 32 CTTCGATCCA ............................ CGCTACCGTTTTTCTCATCCGAATACGAAACC 811472 28 100.0 32 ATACGAAACC ............................ GATTCTTGGCTTTCTTGTCGCCTTCGATCCAT 811532 28 100.0 32 TTCGATCCAT ............................ GCCACGAGGCGGTTTTTTTGTGCCTGTAACTC 811592 28 100.0 32 CCTGTAACTC ............................ AACATTCCGGGAATATCAGAAGATGCCTGCCC 811652 28 100.0 32 ATGCCTGCCC ............................ ATGATGTTCCGACAGCTGTCCCGTCATGTCTA 811712 28 100.0 32 GTCATGTCTA ............................ ATTGATGATGTGCAGATGATGCACATAGCAAT 811772 28 100.0 32 ACATAGCAAT ............................ TGCAGCGCATCGTTGAACGTTCTGTACAGCCC 811832 28 100.0 32 TGTACAGCCC ............................ GGTAGCCAATTTGCGCAGAGTATCGTCGCGAT 811892 28 100.0 32 TCGTCGCGAT ............................ AGAGTGCGCCGCGTACTGGCTTGCTAGCGGTG 811952 28 100.0 32 GCTAGCGGTG ............................ TGTTTCGATTTTCGCAACGCTCCGGGCACGGT 812012 28 100.0 32 CGGGCACGGT ............................ ATCATCGAGTTTCTTAATTGCCATAAGAACAC 812072 28 100.0 31 ATAAGAACAC ............................ GAGTTAAGATTAATATCGTTTTAATAGCCTT 812131 28 100.0 32 TAATAGCCTT ............................ AGCATAAATCCCATTTATATAGGATATGACAT 812191 28 100.0 32 GATATGACAT ............................ AGGTGAATCATTTATTCGAAGCCAGGCTGAGA 812251 28 100.0 32 CAGGCTGAGA ............................ AAATGCGTTCATCCGGCACCGCTGGTGCTGGC 812311 28 100.0 32 TGGTGCTGGC ............................ GGCTTTAAAAACGGCGTTCTCAGCGCACTTGT 812371 28 100.0 32 GCGCACTTGT ............................ AATACGTGATCAGCTTAAACTCAATATCACCT 812431 28 96.4 32 AATATCACCT ...........A................ AAGGACGTCCGGCACCTACCGGGCTTTACGCC 812491 28 100.0 32 GCTTTACGCC ............................ GAGGAGACGCGGGAATCAGAATTCATACTCAA 812551 28 100.0 32 TCATACTCAA ............................ GTAATGACGGTCTTCCAGCGTCACTTTGCCAT 812611 28 100.0 32 ACTTTGCCAT ............................ TCAGATTGCCGAGTACACCCGATCGCCGTTAT 812671 28 96.4 32 TCGCCGTTAT ......A..................... ATCCGTAACAAGGACTGGGAAGCCACTGTCGA 812731 28 100.0 32 CCACTGTCGA ............................ TGGAATGATGTTGTGACCCCCGAATAGCGACC 812791 28 96.4 32 AATAGCGACC ...........A................ GTCATCAGCCGAAAAAACGCTTTTGCGTAGGC 812851 28 96.4 TTGCGTAGGC ...........A................ GGACAACTGA ========== ====== ====== ====== ========== ============================ 43 28 31 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [7,7] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [131,466] Score: 0.18/0.18 # # Final direction: F [1.55,0.18 Confidence: HIGH] >NC_012912 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 799874 28 100.0 32 GAAATAGATT ............................ CGCTATCGCGCTGTACTATTTCAACGACGTAT 799934 28 100.0 32 AACGACGTAT ............................ AGCCCGGTTCATAGAGCCGGAAGAGATGGAAT 799994 28 100.0 32 GAGATGGAAT ............................ CCGGGTGGGGGTCAGCACTTTTGCCAGCTTCT 800054 28 100.0 32 GCCAGCTTCT ............................ GGTGACGCGCTGGAGCGGGCATGTTGCATCCC 800114 28 100.0 32 GTTGCATCCC ............................ GCATAAACTGTGCCAGGCCGCTGGCGCCAACG 800174 28 100.0 32 GGCGCCAACG ............................ GACCAGATGGGCAGTTTCTCATGCGCCTTCGT 800234 28 100.0 32 GCGCCTTCGT ............................ CTCTTCCCATGCGCCTCGTGCCAGTTGCATTC 800294 28 100.0 32 AGTTGCATTC ............................ AGCTAAAAACCAGCAACGACGCCGAGCTGGTG 800354 28 100.0 32 CGAGCTGGTG ............................ TGTCTCAGTGTAAGCCCCAGTGCCGCCGCTAT 800414 28 100.0 32 CCGCCGCTAT ............................ AAAATCCTCGTTCATACCGCGAGCGCCGGACA 800474 28 100.0 31 GCGCCGGACA ............................ GAGCAGTTCGTCAACGAAACGCCGTTGCTCA 800533 28 100.0 32 CCGTTGCTCA ............................ TTGACCGCCTTGATCGCGCTACCCAGAGCGAA 800593 28 100.0 32 CCAGAGCGAA ............................ CCACATCCGCCGTCGGGTCGCGCTGGAGCTGT 800653 28 100.0 32 CTGGAGCTGT ............................ AATAAAAAACCCCGGTTAAGGGGTTTTGTTTA 800713 28 100.0 33 GTTTTGTTTA ............................ GCCAGGCTCTCAGGTGTTGCCAACTCACCCCTG 800774 28 100.0 32 CTCACCCCTG ............................ GTCGGACTCCTTCAGTTTCTGTTGGGTTCTGC 800834 28 100.0 32 TGGGTTCTGC ............................ CCACCTCGTCACGGTCAAAGCCTGGCATTGCT 800894 28 100.0 32 TGGCATTGCT ............................ AGCTGCAGCGATTAGATTGTCCACCTCGTCAC 800954 28 100.0 32 ACCTCGTCAC ............................ TCTCGCGACCGGTCATCCTATCAAGTATGACG 801014 28 100.0 AAGTATGACG ............................ TGTAGCCCGT ========== ====== ====== ====== ========== ============================ 20 28 32 TTTCTAAGCTGCCTATCCGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [56.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [442,298] Score: 0/0.18 # # Final direction: R [0.27,0.74 Confidence: MEDIUM] >NC_012912 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 818121 28 100.0 32 GTTGTCCACA ............................ AGGCCGACTACACACGGCAGGCCCAGCAGCAG 818181 28 100.0 32 CCAGCAGCAG ............................ GCTTTTAAGGCATTTGCTATCAGCGTCATAGT 818241 28 100.0 33 GCGTCATAGT ............................ CCCTGTCCATCCCGGCGCAGCCAATATAGGCCA 818302 28 100.0 32 ATATAGGCCA ............................ GCCTGTGGTCAAGCTCCGTTTCGATTTGAAAC 818362 28 100.0 32 GATTTGAAAC ............................ ACGAGGTTATTGGTAACTGGGTGTGGGTCAGT 818422 28 100.0 32 GTGGGTCAGT ............................ ATATCTCTTGCATCAGCCCCCATTTGTTGTCA 818482 28 100.0 32 TTTGTTGTCA ............................ GACAGGCGCGAACGCTACTCACGGGCAATGCA 818542 28 100.0 32 GGGCAATGCA ............................ GCACGGGCGTTTATCTCTGGTCAAATGGGGCC 818602 28 100.0 32 AAATGGGGCC ............................ GACGGCCAGCCGGTCACTGAACCGATGCCAAC 818662 28 100.0 32 CGATGCCAAC ............................ ATCAGAACGGGCTAGGTTGGGGTTGTCCCAAG 818722 28 100.0 32 TTGTCCCAAG ............................ TGGCCGAGAGCGCGCAGACAATAGCCACGCAT 818782 28 100.0 32 AGCCACGCAT ............................ GTAGCCATAGCCGCCAACATCTGCCGGTTCGC 818842 28 100.0 32 GCCGGTTCGC ............................ GCAGAATATCTGAAAGACGGCAATGCCACGCA 818902 28 100.0 32 ATGCCACGCA ............................ TAATTGCCCCGCGCTTGGCGGTGGTGGTTAGC 818962 28 100.0 32 GGTGGTTAGC ............................ GGATGAGATTGCAAACATTTGTTCTGAGTTCA 819022 28 100.0 32 TCTGAGTTCA ............................ GTTGCGCATCGCGTCTGCGAGGTACTCAATGC 819082 28 100.0 32 TACTCAATGC ............................ GTGCCCAACCCGGCGCGTAGCCGCGAGACTTG 819142 28 100.0 GCGAGACTTG ............................ CGTAGCAATTT ========== ====== ====== ====== ========== ============================ 18 28 32 TTTCTAAGCTGCCTATACGGCAGTGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [457,203] Score: 0.18/0.18 # # Final direction: R [0.18,1.01 Confidence: HIGH] >NC_012912 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1045897 28 100.0 33 NNNNNNNNNN C..G...........A............ CCGGGTCAGTTTTGATAATCGTGCGGTAGACAA 1045958 28 100.0 33 NNNNNNNNNN ............................ AGCGTTGATGACGTCCAGAGCATGGGTGCCTGG 1046019 28 100.0 33 NNNNNNNNNN ............................ CCATTCGGGGGCGCTGGGTTCCAGTCGCTGATA 1046080 28 100.0 33 NNNNNNNNNN ............................ TGCGCGAGTAGGTTTTGCTTTTTGCCGTATGTG 1046141 28 100.0 33 NNNNNNNNNN ............................ TAGCTACCGCCAATTTTCGCAAAGTGGGCAACG 1046202 28 100.0 33 NNNNNNNNNN ............................ GTCTGGCACCTTTGCCAAGATGGCAACGCCGGG 1046263 28 100.0 33 NNNNNNNNNN ............................ ACAGCGTCCGCGCCCTCTAACTGGTGCAAATCG 1046324 28 100.0 33 NNNNNNNNNN ............................ CAGACCCACGTACTGACACTTTTGCGCTACGGA 1046385 28 100.0 33 NNNNNNNNNN ............................ TCTGCTTTATCATGTAGAGCGGATGCATCTTGA 1046446 28 100.0 33 NNNNNNNNNN ............................ TGCGCGAGTAGGTTTTGCTTTTTGCCGTAAGTG 1046507 28 100.0 33 NNNNNNNNNN ............................ TCTTCATCCTCATCCCTGCCGGTAATGACAACA 1046568 28 100.0 33 NNNNNNNNNN ............................ ACAGCGGCAGACGTGCAGGCGTTCCTCGGTGAA 1046629 28 100.0 33 NNNNNNNNNN ............................ CCGCCGACCCTGTTACAATAATCGTTGCAATTG 1046690 28 100.0 33 NNNNNNNNNN ............................ GCTGCCTCGGTAACCTGTCGCTGAGCGTAAGCA 1046751 28 100.0 33 NNNNNNNNNN ............................ CTCCTTTGAGCATCCATGCTGCCCCTGATTGTA 1046812 28 100.0 33 NNNNNNNNNN ............................ TCACATTAACTCCTGATCAACTCAGCAACTTTG 1046873 28 100.0 33 NNNNNNNNNN ............................ GGGGCTGACGCCGGGTCCTGGTCGGGTTTTCAA 1046934 28 100.0 33 NNNNNNNNNN ...............A............ CTCTGATTGTGGTTGCAATACCACCGCCAGAAA 1046995 28 100.0 32 NNNNNNNNNN ............................ CCCCCTCCGGCACGCTCGGTAACTCGCAGGTA 1047055 28 100.0 33 NNNNNNNNNN ...............A............ GTGCTGCCAGTCCACCCGGTTGCCGCGCTCTTG 1047116 28 100.0 33 NNNNNNNNNN ............................ ACAGCGGCAGACGTGCAGGCGTTCCTCGGTGAA 1047177 28 100.0 33 NNNNNNNNNN ............................ CCGCCGACCCTGTTACAATAATCGTTGCAATTG 1047238 28 100.0 33 NNNNNNNNNN ............................ GGAATAATCCTATCTAATACAGCACCTACTAAA 1047299 28 100.0 33 NNNNNNNNNN ............................ AGCGTTGATGACGTCCAGAGCATGGGTGCCTGG 1047360 28 100.0 33 NNNNNNNNNN ............................ CCATTCGGGGGCGCTGGGTTCCAGTCGCTGATA 1047421 28 100.0 33 NNNNNNNNNN ............................ TAGCTACCGCCAATTTTCGCAAAGTGGGCAACG 1047482 28 100.0 33 NNNNNNNNNN ............................ GTCTGGCACCTTTGCCAAGATGGCAACGCCGGG 1047543 28 100.0 33 NNNNNNNNNN ............................ ACAGCGTCCGCGCCCTCTAACTGGTGCAAATCG 1047604 28 100.0 33 NNNNNNNNNN ............................ CAGACCCACGTACTGACACTTTTGCGCTACGGA 1047665 28 100.0 33 NNNNNNNNNN ............................ TCTGCTTTATCATGTAGAGCGGATGCATCTTGA 1047726 28 100.0 33 NNNNNNNNNN ............................ TGCGCGAGTAGGTTTTGCTTTTTGCCGTAAGTG 1047787 28 100.0 33 NNNNNNNNNN ............................ TCTTCATCCTCATCCCTGCCGGTAATGACAACA 1047848 28 100.0 33 NNNNNNNNNN ............................ ACTTGCTGTAACTCATCGGTGGGGCGATCCCTA 1047909 28 100.0 33 NNNNNNNNNN ............................ GGTTACCCGGACGATATCGAGTATGACAGCCTG 1047970 28 100.0 33 NNNNNNNNNN ............................ CACCGCCCGTTCCGGCTCAACGCCAGGGGACAA 1048031 28 100.0 33 NNNNNNNNNN ............................ GGGATAACCAAAAGTTGCTGCAGGCCTACCAGT 1048092 28 100.0 33 NNNNNNNNNN ............................ TTGTGTCTGGCAGCGGCAGTTTGCTGAATCTCG 1048153 28 100.0 33 NNNNNNNNNN ............................ TACTGCCATTCCAAAAACCAAATAATGCACGGA 1048214 28 100.0 33 NNNNNNNNNN ............................ CAGCATCTGACACGCTGGATGTCGCCACAATGA 1048275 28 100.0 33 NNNNNNNNNN ............................ TAGGGTGAAACAGAAATGCTGCGATAATTTTGA 1048336 28 100.0 33 NNNNNNNNNN ............................ CGATGAATCATCCTGAAATATCCCAACGACAGA 1048397 28 100.0 33 NNNNNNNNNN ............................ GATTACGACTTGCACGGCGGGGCCGGTTTGCGG 1048458 28 100.0 33 NNNNNNNNNN ............................ TGATGCTACGCGCAGATGTTCGCGACCCTGCTG 1048519 28 100.0 33 NNNNNNNNNN ............................ CGACAGAATAGTCACACTGGAGAAACAGCTTCA 1048580 28 100.0 33 NNNNNNNNNN ............................ TTTGTTTGTGATGGTTTGCATGTAAATCCCCTG 1048641 28 100.0 33 NNNNNNNNNN ............................ TCCGTGATGATTGGGGCGGCGTAGAGCGGAGTA 1048702 28 100.0 33 NNNNNNNNNN ............................ GCCGTTTTGCGGTTTCTTCGAAAGCCCTTTTAA 1048763 28 100.0 33 NNNNNNNNNN ............................ CCTGGAACTCATAAGCGACGATGGCAAAGCGCA 1048824 28 100.0 33 NNNNNNNNNN ............................ AGGCTGACGAATGCCGAACCGGTCGCTATCGCG 1048885 28 100.0 33 NNNNNNNNNN ............................ CCGTTCTGGCCCGTCACGGTAGTCCAGACCGTA 1048946 28 100.0 33 NNNNNNNNNN ............................ TTGGCTCCGTTCGATCACAGCCGTAGATAAGCG 1049007 28 100.0 33 NNNNNNNNNN ............................ CGCTTGCTGAATGTCATCTGAGGACAGCTCCAG 1049068 28 100.0 33 NNNNNNNNNN ............................ TAGCCAAGGTTCTGCGCACACCGTAGACCCGGA 1049129 28 100.0 33 NNNNNNNNNN ............................ TCAGGAAGTGGTTGGTGATCTTGCTAAGTGTTG 1049190 28 100.0 33 NNNNNNNNNN ............................ ACTGCTGAACACTTGTGTGAAATGAATGAGGGA 1049251 28 100.0 33 NNNNNNNNNN ............................ GGTAAGAGCATGAGATTCGTCATCCGATCAATG 1049312 28 100.0 33 NNNNNNNNNN ............................ TCGGGCCTTCAGTGCGTCCGGTAGTTGCGTCCA 1049373 28 100.0 33 NNNNNNNNNN ............................ TAGTTTATCCAGATCCGCCAGCGCCGCCAAAGG 1049434 28 100.0 33 NNNNNNNNNN ............................ GCGCTCCATCATGCCTAGCTTTGTCGGAATAGA 1049495 28 100.0 33 NNNNNNNNNN ............................ TCTCTTCCGGCGTCAGCGGAGCAGCTTGCTGAG 1049556 28 100.0 33 NNNNNNNNNN ............................ CATGCCGTAAGGCGTGCATTTGGCGGAGATGGG 1049617 28 100.0 33 NNNNNNNNNN ............................ ATCGCGTGGCGACCGGAAGCGGTGCCGCTCACA 1049678 28 100.0 33 NNNNNNNNNN ............................ GTAGCCGCTACCGGCGCACGAATAGGTAGATGA 1049739 28 100.0 33 NNNNNNNNNN ............................ AGTCACCGCGTGGTGAGCCTGTGTAGTGATGGG 1049800 28 100.0 33 NNNNNNNNNN ............................ AATCGCCGATCATCTCAACGGGTAAATCAAACG 1049861 28 100.0 33 NNNNNNNNNN ............................ GACATCGACCATGTACAGGGCGCTATCTAACCA 1049922 28 100.0 33 NNNNNNNNNN ............................ GGCTATCAGTAGCCTTAGTAATCCACGTTACTA 1049983 28 100.0 33 NNNNNNNNNN ............................ GACACGAACAAGGCTTGTGGCGCAGACAGCGGG 1050044 28 100.0 33 NNNNNNNNNN ............................ GTCGCGGGTTGAGTCGTGCATGATGCCCATCAG 1050105 28 100.0 33 NNNNNNNNNN ............................ CTTTTTATCCTGTGGGCTTCGGGCGCGTTACTG 1050166 28 100.0 33 NNNNNNNNNN ............................ GTTTTGCGCGTTACCCCGTCTCGCTCGAAGAAA 1050227 28 100.0 33 NNNNNNNNNN ............................ TGACCATAAGCGATGATAAACATCACTGAGGCA 1050288 28 100.0 33 NNNNNNNNNN ............................ AAAGCGCAGGGCAAATAGAAAATATCCTGAATG 1050349 28 100.0 33 NNNNNNNNNN ............................ GCCGTCTTGCTCCAGGCTGTCCACGTCCCTCCA 1050410 28 100.0 33 NNNNNNNNNN ............................ GCAGGAAAAGGTCTGGACTAACACTGCAGCTCA 1050471 28 100.0 33 NNNNNNNNNN ............................ AGAAGCGTTGGAACTGACCGCAGCTTTGGCGGA 1050532 28 100.0 33 NNNNNNNNNN ............................ TCTGGCGAACGGAAAGTTTGTAGCTTTTGAACG 1050593 28 100.0 33 NNNNNNNNNN ............................ CCGCAGCCAAGCAACAACGGGAATTGCTGAATG 1050654 28 100.0 33 NNNNNNNNNN ............................ ACATTCGCAAAGAAAATTCGTTCGCTTCGGCAA 1050715 28 100.0 33 NNNNNNNNNN ............................ GCTTGACCTTCTGCCGACGCAAACGTTCTTCGG 1050776 28 100.0 33 NNNNNNNNNN ............................ CGCGGCATCAAATTTATATCGAAGGCGTTAAAG 1050837 28 100.0 33 NNNNNNNNNN ............................ CAAAGACGAAGACGCTTCCGGCTGGAACCGACA 1050898 28 100.0 33 NNNNNNNNNN ............................ CAATCGCTTTTAAGCAATCGTCGAAGATTGGCG 1050959 28 100.0 33 NNNNNNNNNN ............................ ACCGCTTGACAACATCGAAGGGCAGTCGTATAG 1051020 28 100.0 33 NNNNNNNNNN ............................ TATCCGACTTTACCGCACAAAGAAGCAACGCAA 1051081 28 100.0 33 NNNNNNNNNN ............................ CTGTTCGCCTTGACCCCGGCCAATTCAAATGGA 1051142 28 100.0 33 NNNNNNNNNN ............................ CGGCGCTGTTCGGTTACGTTTCCGAAGCGAACG 1051203 28 100.0 33 NNNNNNNNNN ............................ CCGCGCAGGTTTTCGCCGAAAAAATAAGCTTTG 1051264 28 100.0 33 NNNNNNNNNN ............................ TTCAGCAAGAACAAGCTTCGGCGCTGCGAACTG 1051325 28 100.0 33 NNNNNNNNNN ............................ AAGTTCCCGCCCTTTTTCTTAACTTCGAAGGAG 1051386 28 100.0 33 NNNNNNNNNN ............................ CAAATCATCAAGGCTAAAGACTATTTGGAATCA 1051447 28 100.0 33 NNNNNNNNNN ............................ TTGTCGATACGGTCTTGAAGGGCTGGAAGAATG 1051508 28 100.0 33 NNNNNNNNNN ............................ CAATATGAACGCCATTTGCGGGCATTAGTTTTG 1051569 28 100.0 33 NNNNNNNNNN ............................ TTCCGGCTTGGGACGCATACACGCCGGAACGTA 1051630 28 100.0 33 NNNNNNNNNN ............................ AAGGGAAAGAAGCCGGATTCAATGGCTTCAATG 1051691 28 100.0 33 NNNNNNNNNN ............................ CGGCCCAACCGAAAAGGAACCGAAATTATGTCA 1051752 28 100.0 33 NNNNNNNNNN ............................ TAAACAACGCAGCCAGCTCCTTAGCTTGTCCGA 1051813 28 100.0 34 NNNNNNNNNN ............................ CGCTGATGCTCCACCAGCACATCGACCGCGTCGC 1051875 28 100.0 33 NNNNNNNNNN ............................ ACAATTGGAGAATAGCGAATGCAAATGAACCAG 1051936 28 100.0 33 NNNNNNNNNN ............................ CGCTTACATGCGGCGCGAATGCAAGATTTGCCG 1051997 28 100.0 33 NNNNNNNNNN ............................ CAGGCTGCTCGGCGCGGGGGTAAAACAGCCATG 1052058 28 100.0 33 NNNNNNNNNN ............................ GATTTGCCATTGCAGGACTGGCAGGAATACAAG 1052119 28 100.0 33 NNNNNNNNNN ............................ CAAGCTCTTATGCAGGAGCAAGCAAATTTAGTA 1052180 28 100.0 33 NNNNNNNNNN ............................ GCGGCATCGACGATCGCGCTGTCGCAACTCTCG 1052241 28 100.0 33 NNNNNNNNNN ............................ GGCCGCCATGATCACCACTCCAAGCTTTTCAGG 1052302 28 100.0 33 NNNNNNNNNN ............................ GTCGGGCTCGAAAGCCCCGTCGCATTGTGGACA 1052363 28 100.0 33 NNNNNNNNNN ............................ CTCCGCGCAGTGACACCGGGCGATCGGGTGATG 1052424 28 100.0 33 NNNNNNNNNN ............................ GAAGCGCCCCTAAATGTTTAAAAGTCCGGGACA 1052485 28 100.0 33 NNNNNNNNNN ............................ CCAGCAGCGACGCAGCGTTTCATCGATATCGGA 1052546 28 100.0 33 NNNNNNNNNN ............................ AAAGCGCTGAAGGCTCAGCGCCAGCAATGCGAA 1052607 28 100.0 33 NNNNNNNNNN ............................ TTTAGCGTCGAGGCGCTGAACGCAAACGTAACG 1052668 28 100.0 33 NNNNNNNNNN ............................ TCACAGATGCGGTTAGATACCTTCTGCCCTTGA 1052729 28 100.0 33 NNNNNNNNNN ............................ GATCGCGGCTTGGCTAACCCCGATGTCGTATAA 1052790 28 100.0 33 NNNNNNNNNN ............................ CCAAAAGCTACACCGATTTGACCGCGGCTTACA 1052851 28 100.0 33 NNNNNNNNNN ............................ TGGCGGCCAACGAAAACCCACAGAAGATTTTCA 1052912 28 100.0 33 NNNNNNNNNN ............................ ACGCCGGTTTGCGGGTCAAGGCTGGCTGATGCG 1052973 28 100.0 33 NNNNNNNNNN ............................ GAGCCGCCAGATGCTATGCACAAAGCCCGGTTA 1053034 28 100.0 33 NNNNNNNNNN ............................ GAACCCGTTTTCCGCTCGCGTTTCGCGGACTAA 1053095 28 100.0 33 NNNNNNNNNN ............................ AGGAAAGGCTGACTCCTGAGCAGCGGCGTTTCG 1053156 28 100.0 33 NNNNNNNNNN ............................ CTGAAAACTTCGATGCGGAGATAGGCCGTAAGA 1053217 28 100.0 33 NNNNNNNNNN ............................ CGCATGTGAAACGCTAACAGCGCTGAGTATATG 1053278 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 122 28 33 GAAACACCCCCACGTGCGTGGGGAAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-10.90,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [40.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [112,49] Score: 0.18/0.18 # # Final direction: R [0.55,0.68 Confidence: LOW] >NC_012913 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 342337 32 100.0 34 NNNNNNNNNN ................................ ATCTGAAATACCTTCAATATTGGTTACTATCCGA 342403 32 100.0 34 NNNNNNNNNN ................................ TGGGGTTTACTGACATTGACGCCTGCGTTTGTTG 342469 32 100.0 35 NNNNNNNNNN ................................ TGCTTAATCTAGGGGTTCATCATGGTAAAAATCAT 342536 32 100.0 36 NNNNNNNNNN ................................ ATATTGGTAGATGTGTTGAGTCGTGACTTAGTAAAA 342604 32 100.0 36 NNNNNNNNNN ................................ TCAAAAGAAGCTGTTCAACATAACAATCACATTATC 342672 32 100.0 35 NNNNNNNNNN ................................ CAGCATTTGAATAGCGTTGAGTACCGTATCATACC 342739 32 100.0 35 NNNNNNNNNN ................................ TTAAATTTGCGCGATGACGCTTAAATGTAGCTGTA 342806 32 100.0 34 NNNNNNNNNN ................................ ATCTATGTAATCCTTATTTATTACATAGCCATTG 342872 32 100.0 1 NNNNNNNNNN ......A...T..G.A......A......... NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 9 32 34 GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-4.50,-4.30] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [65.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [193,245] Score: 0/0.18 # # Final direction: F [0.68,0.37 Confidence: LOW] >NC_012914 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 5070518 29 100.0 19 NNNNNNNNNN C...................T........ GGATACTGCCGTTGGGCCG 5070566 29 100.0 22 NNNNNNNNNN ........T.................... AGACACCGCACCTGGCCAGCCA 5070617 29 100.0 19 NNNNNNNNNN ............................. GGATACTGCCGTTGGGCCG 5070665 29 100.0 22 NNNNNNNNNN ............................. AGACACCGCACCTGGCCAGCCA 5070716 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 5 29 20 TAGCCGTAACCAGGTCCCATCTCTGCTGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [36.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [1089,1401] Score: 0/0.18 # # Final direction: R [0,1.05 Confidence: HIGH] >NC_012914 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================== ====== 546577 26 100.0 36 NNNNNNNNNN .......G............T..... AGGTGCGGACGCTCGAGCGCGCGGTTAAAGTAGCCC 546639 26 100.0 35 NNNNNNNNNN .......................... CCGGTGAACGGATGATCTGACTGGTGCAAGCGCGA 546700 26 100.0 37 NNNNNNNNNN .......GA................. GGGTGCGGACGCTCGAGTGCAGGGTTAAAGCAGCCCA 546763 26 100.0 36 NNNNNNNNNN .......G..............G... CCGGTGAACGGATGATCTGACTGGTGCAAGGCGCGA 546825 26 100.0 36 NNNNNNNNNN .......GAA......A......... AGTTGCGGACGCTCGAGCGCGGGGTTAAAGCAGCCC 546887 26 100.0 37 NNNNNNNNNN ..........G..G............ CCGGTGAACGGATGATCTGACTGGTGCAAGGCGCGAC 546950 26 100.0 37 NNNNNNNNNN .TA.GAGG.A....C.....T..... TGGTGCGGACGCTCGAGCGCGGGGTTAAAGCAGCCCA 547013 26 100.0 36 NNNNNNNNNN .......G..............G... CCGGTGAACGGATGATCTGACTGGTGCAAGGCGCGA 547075 26 100.0 36 NNNNNNNNNN .......G.A..........T..... GGGTGCGGACGCTTGAGCGCGGGGTTAAAGCAGCCC 547137 26 100.0 1 NNNNNNNNNN .......................... NNNNNNNNNN ========== ====== ====== ====== ========== ========================== 10 26 36 AATAAGACGGAAAAACCGTGCTACAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:57.69%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [4-16] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [35,336] Score: 0.18/0.18 # # Final direction: R [0.41,0.55 Confidence: LOW] >NC_012947 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1002908 29 100.0 32 NNNNNNNNNN ............................. AGCACAAATATCATCGCTCAAACCACTTACGG 1002969 29 100.0 32 NNNNNNNNNN ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 1003030 29 100.0 32 NNNNNNNNNN ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 1003091 29 100.0 32 NNNNNNNNNN ............................. ACAATCAGGGAACGATTGTTGACACTGTAAAA 1003152 29 100.0 32 NNNNNNNNNN ..........T..T............... ACCTGAACGAAACGCAAAATAGTTTCTTTATG 1003213 29 100.0 32 NNNNNNNNNN ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 1003274 29 100.0 32 NNNNNNNNNN ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 1003335 29 100.0 32 NNNNNNNNNN ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 1003396 29 100.0 32 NNNNNNNNNN ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 1003457 29 100.0 32 NNNNNNNNNN ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 1003518 29 100.0 32 NNNNNNNNNN ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 1003579 29 100.0 33 NNNNNNNNNN ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 1003641 29 100.0 32 NNNNNNNNNN ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 1003702 29 100.0 1 NNNNNNNNNN .A..........................A NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 14 29 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-13.40,-12.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [341,640] Score: 0/0.18 # # Final direction: F [1.65,0 Confidence: HIGH] >NC_012947 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1021964 29 100.0 32 ACCGTTCAGG ............................. GTCATCACGATGAATCAAAATTTCGCCCAGCT 1022025 29 100.0 32 TCGCCCAGCT ............................. CTTCTCCACCGTTTGGCGAATCGGTGTGAGGG 1022086 29 100.0 32 GGTGTGAGGG ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 1022147 29 96.6 32 ATATCATTCC ...........A................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 1022208 29 100.0 GTCCAGCACT ............................. GGCGCACTGG ========== ====== ====== ====== ========== ============================= 5 29 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-13.40,-12.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [79,83] Score: 0/0.18 # # Final direction: F [1.92,0 Confidence: HIGH] >NC_012962 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3153228 28 100.0 32 NNNNNNNNNN A.........AT..A..T......AC.. GCAGTCTTCTGTATACAACTTTGCCATACCCC 3153288 28 100.0 32 NNNNNNNNNN AAG......................... TCTGCTTCTTTGGAATTACTAAAAACAGGAAT 3153348 28 100.0 32 NNNNNNNNNN ............................ TTCCGATCATACGTTCGGGCGTTCGTTGGCAT 3153408 28 100.0 32 NNNNNNNNNN ............................ GCGGCGAAAATGAAAAAACCCCGTTAATACGA 3153468 28 100.0 32 NNNNNNNNNN ............................ TCGTTATCACTTTTAATCAATGCAACTTCTCT 3153528 28 100.0 32 NNNNNNNNNN ............................ ATAAAAGAATTTGACGAACACGTCAGCAAAAA 3153588 28 100.0 32 NNNNNNNNNN ............................ TGTATTTGATCCAGAAAAAGGCGCTATTTTTC 3153648 28 100.0 32 NNNNNNNNNN ............................ AAGCACATATCCATGATGATGAATTTTGTTAT 3153708 28 100.0 32 NNNNNNNNNN ............................ TAACATTAACTCAATATATTGATTGCTACTTT 3153768 28 100.0 32 NNNNNNNNNN ............................ TAACATTAACTCAATATATTGATTGCTACTTT 3153828 28 100.0 32 NNNNNNNNNN ............................ ATGCTTTGAAATATAGTAACGGTCAAGCAAAA 3153888 28 100.0 32 NNNNNNNNNN ............................ AGAGCGAGGTCGATAAGTATGTCTCAAATATT 3153948 28 100.0 33 NNNNNNNNNN ............................ ATGAATCATCCTCAGATAGAATTAAATGTGTAT 3154009 28 100.0 32 NNNNNNNNNN ............................ CATCATCAGAATCGGGAAGCTTTGGCGCATCA 3154069 28 100.0 32 NNNNNNNNNN ............................ GGATCTGTACGCTGTTGCATAGCCAGCCATAG 3154129 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 16 28 32 TTTCTAAGCTGCCTGTACGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,8] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [141,417] Score: 0.18/0.18 # # Final direction: R [0,1.83 Confidence: HIGH] >NC_012967 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2772561 29 100.0 32 CCAGTGCGCC ............................. AGTGCTGGACCATTTCAAATTCACAATAGATT 2772622 29 96.6 32 ACAATAGATT .................T........... GGAATGATATTTCAATAAATAATTATAACAAT 2772683 29 100.0 32 TTATAACAAT ............................. CCCTCACACCGATTCGCCAAACGGTGGAGAAG 2772744 29 100.0 32 GGTGGAGAAG ............................. AGCTGGGCGAAATTTTGATTCATCGTGATGAC 2772805 29 100.0 TCGTGATGAC ............................. CCTGAACGGT ========== ====== ====== ====== ========== ============================= 5 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [40.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [83,79] Score: 0/0.18 # # Final direction: R [0,1.92 Confidence: HIGH] >NC_012967 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2792513 29 100.0 32 NNNNNNNNNN T..........................T. GACAGAACGGCCTCAGTAGTCTCGTCAGGCTC 2792574 29 100.0 33 NNNNNNNNNN ............................. ACACGCCCTTATCAAATAGCTGTGATTTACCTA 2792636 29 100.0 32 NNNNNNNNNN ............................. ATAGACCCCGAACAACAATACGCGCAAACCGA 2792697 29 100.0 32 NNNNNNNNNN ............................. TACCGTACAGACTGCCGGATATTATTTTTTTG 2792758 29 100.0 32 NNNNNNNNNN ............................. CTGCTGCTCGAGCTGGTGGAGTGCTGCTATAG 2792819 29 100.0 32 NNNNNNNNNN ............................. AACGTCAGGTTGTCGCCGCTCTGCGTGGTCGC 2792880 29 100.0 32 NNNNNNNNNN ............................. TGCATGGCTTTGGCTTCCTCTTTGACGGACGC 2792941 29 100.0 32 NNNNNNNNNN ............................. ATATATCAGAGCAAAAAACAAAGCCACAGCCA 2793002 29 100.0 32 NNNNNNNNNN ............................. CATAAAGAAACTATTTTGCGTTTCGTTCAGGT 2793063 29 100.0 32 NNNNNNNNNN ...............A..A.......... TTTTACAGTGTCAACAATCGTTCCCTGATTGT 2793124 29 100.0 32 NNNNNNNNNN ............................. CCGCCGTTGGCACCGTCAAACTCCGGTACTGT 2793185 29 100.0 32 NNNNNNNNNN ............................. TATAGAGATCGTTTTTGGAATTTACAGCGAGG 2793246 29 100.0 32 NNNNNNNNNN ............................. CCGTAAGTGGTTTGAGCGATGATATTTGTGCT 2793307 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 14 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [640,341] Score: 0/0.18 # # Final direction: R [0,1.65 Confidence: HIGH] >NC_012926 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 388734 20 100.0 37 TTTTTTATAT .................... TCGTCGGTAGACGATTCTCATTGTACGTGGGACGTCC 388791 20 95.0 60 TGGGACGTCC ..G................. CTGCCGTGCCGGCAGGCAGTTTTCTTTATACTCAAAAGTCCGGGGGACAGTCATTTTTAT 388871 20 100.0 37 TCATTTTTAT .................... TCGTCGGTAGACGATTCTCATTGTACGTGGGATGTCC 388928 20 95.0 TGGGATGTCC ..G................. CTGCCGTTAGG ========== ====== ====== ====== ========== ==================== 4 20 44 TAAAAGGTTGGAGATTGGAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [36,254] Score: 0.18/0.18 # # Final direction: F [0.68,0.18 Confidence: MEDIUM] >NC_012914 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 5609402 23 100.0 25 NNNNNNNNNN ....................... AGTGTTGCCTGTGTTGCCAGTACCC 5609450 23 100.0 34 NNNNNNNNNN ....................... TGGTGTAGTAGGCTTAGTAGTGTTGCCAGTTCCT 5609507 23 100.0 1 NNNNNNNNNN ....................... NNNNNNNNNN ========== ====== ====== ====== ========== ======================= 3 23 29 GTGCTTGGTGTTGTTGGCTTAGT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.17%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [551,688] Score: 0/0.18 # # Final direction: NA [0,0 Confidence: NA] >NC_012971 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2717668 29 100.0 32 CCAGTGCGCC ............................. AGTGCTGGACCATTTCAAATTCACAATAGATT 2717729 29 96.6 32 ACAATAGATT .................T........... GGAATGATATTTCAATAAATAATTATAACAAT 2717790 29 100.0 32 TTATAACAAT ............................. CCCTCACACCGATTCGCCAAACGGTGGAGAAG 2717851 29 100.0 32 GGTGGAGAAG ............................. AGCTGGGCGAAATTTTGATTCATCGTGATGAC 2717912 29 100.0 TCGTGATGAC ............................. CCTGAACGGTG ========== ====== ====== ====== ========== ============================= 5 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [40.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [83,79] Score: 0/0.18 # # Final direction: R [0,1.92 Confidence: HIGH] >NC_012917 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3681990 37 100.0 33 NNNNNNNNNN ..................................... TCGAAGCCTTTGCCTTCAGCGTAGTATGCCATG 3682060 37 100.0 32 NNNNNNNNNN ..................................... TTTCAAGAGCATTTCTTTGCGATGTAATTAGT 3682129 37 100.0 33 NNNNNNNNNN ..........G.......................... ACGTTATCCGCATACAGATCGAACTCCATCATG 3682199 37 100.0 33 NNNNNNNNNN ..................................... TGATACATCACGTATGAAGCCAGATCGAAAATC 3682269 37 100.0 33 NNNNNNNNNN .....................T............... TTAAACTGAATAGGGATTTCTTTTAGCTTTTTA 3682339 37 100.0 1 NNNNNNNNNN ............A...................TCCTG NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 6 37 32 GTCCTTACGGACGCTCCCTGACTGAAGGGATTAAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [9,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.20,-6.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [335,736] Score: 0.18/0.18 # # Final direction: F [1.42,0.18 Confidence: HIGH] >NC_012971 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2736174 29 100.0 32 NNNNNNNNNN T..........................T. GACAGAACGGCCTCAGTAGTCTCGTCAGGCTC 2736235 29 100.0 33 NNNNNNNNNN ............................. ACACGCCCTTATCAAATAGCTGTGATTTACCTA 2736297 29 100.0 32 NNNNNNNNNN ............................. ATAGACCCCGAACAACAATACGCGCAAACCGA 2736358 29 100.0 32 NNNNNNNNNN ............................. TACCGTACAGACTGCCGGATATTATTTTTTTG 2736419 29 100.0 32 NNNNNNNNNN ............................. CTGCTGCTCGAGCTGGTGGAGTGCTGCTATAG 2736480 29 100.0 32 NNNNNNNNNN ............................. AACGTCAGGTTGTCGCCGCTCTGCGTGGTCGC 2736541 29 100.0 32 NNNNNNNNNN ............................. TGCATGGCTTTGGCTTCCTCTTTGACGGACGC 2736602 29 100.0 32 NNNNNNNNNN ............................. ATATATCAGAGCAAAAAACAAAGCCACAGCCA 2736663 29 100.0 32 NNNNNNNNNN ............................. CATAAAGAAACTATTTTGCGTTTCGTTCAGGT 2736724 29 100.0 32 NNNNNNNNNN ...............A..A.......... TTTTACAGTGTCAACAATCGTTCCCTGATTGT 2736785 29 100.0 32 NNNNNNNNNN ............................. CCGCCGTTGGCACCGTCAAACTCCGGTACTGT 2736846 29 100.0 32 NNNNNNNNNN ............................. TATAGAGATCGTTTTTGGAATTTACAGCGAGG 2736907 29 100.0 32 NNNNNNNNNN ............................. CCGTAAGTGGTTTGAGCGATGATATTTGTGCT 2736968 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 14 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [640,341] Score: 0/0.18 # # Final direction: R [0,1.65 Confidence: HIGH] >NC_012943 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1290260 36 100.0 38 TGTCCATAGA .................................... TTAAAACCGTGTTGCACTGCAACCCGGAATTCTTGCAC 1290334 36 100.0 41 ATTCTTGCAC .................................... CATAGAGGGTCGCCGGCTCTGGATCACGCTCCCCTAGTCGT 1290411 36 100.0 36 CCCTAGTCGT .................................... TTTTTGCCTCATGCTTGGGCGACAGCTTTTGACCAA 1290483 36 100.0 34 TTTTGACCAA .................................... TCGCAAGCGCCGTGCTTCCAGTGATCGCCTTCTA 1290553 36 100.0 39 TCGCCTTCTA .................................... AACACCTCAGTAGCACGTCATACGCCGACCAATCATCAG 1290628 36 100.0 35 CAATCATCAG .................................... TTTTCTGACCACTTGTGCGGGATTAGCGGGCTTAG 1290699 36 100.0 37 GCGGGCTTAG .................................... ACCAATGCGTCGTCATTTCCGGCTTCAATTTCAGCCT 1290772 36 100.0 38 ATTTCAGCCT .................................... CTGAGGAGAGCGAGTACTCGGGGCTGCCGTCTGCGCTG 1290846 36 100.0 37 GTCTGCGCTG .................................... GCGTGAAACCGCCCCCAGCCTCGCCGGGGCCGCCTAG 1290919 36 100.0 35 GGCCGCCTAG .................................... ACTCGGAATCCCATGTGCTGACAGCGGATTCGCAT 1290990 36 100.0 37 GGATTCGCAT .................................... CGGGCAGCGTTCGACACCCGCTCTAGTTGACTTCCGG 1291063 36 100.0 41 TGACTTCCGG .................................... CAGGTGAGCAACGGCGGCGGCAACCTGGCGGCCACGGGTCG 1291140 36 100.0 40 CCACGGGTCG .................................... ATGGGATATCTGCTGCCCGCCCGGGGAGATGCTGTCCGAG 1291216 36 100.0 36 GCTGTCCGAG .................................... TTCGTCGACCATCATTGCCATTCCCTCTCCCCACGT 1291288 36 100.0 41 CTCCCCACGT .................................... TTGCGCCAACCCTTTCGGTGTGATGCGGATGGTCGGCTCGG 1291365 36 100.0 29 GTCGGCTCGG .................................... CTTGAATAACGCGCAGTGAATTTCGCGGA 1291430 36 88.9 36 ATTTCGCGGA ----................................ ATTCGCACGAGTTCCCGTCAGCGTCGTAAATCGCCA 1291502 36 100.0 37 TAAATCGCCA .................................... CCGGCAACAATCGCGCCGGCCCGCGCGGATGACTCCG 1291575 36 100.0 36 GATGACTCCG .................................... CGCATGGACCCGGGCGAGCTGCAGATGGTCCGGGAG 1291647 36 100.0 36 GGTCCGGGAG .................................... TGGATTGCGCTAACTGGCTTGGCGCTGATCCTGGTG 1291719 36 100.0 41 GATCCTGGTG .................................... TCCACATCGATTTCCTTGACCTCGCCAGGAGAGAAGATCAC 1291796 36 97.2 AGAAGATCAC .........................A.......... TCGTCGACGA ========== ====== ====== ====== ========== ==================================== 22 36 37 GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [12,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.10,-6.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [55.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [50,74] Score: 0/0.18 # # Final direction: F [1.42,0 Confidence: HIGH] >NC_013008 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 3657345 30 100.0 31 NNNNNNNNNN ................AT............ GCGGCACGCTGGATTGAACAAATCCCTGGGC 3657406 30 100.0 31 NNNNNNNNNN .............................. AACCGAAACACACGATCAATCCGAATATGAG 3657467 30 100.0 31 NNNNNNNNNN .............................T TTGGTGACAGTTTTTGTCACTGTTTTGGTGA 3657528 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 4 30 31 CGGTTTATCCCCGCTGGCGCGGGGAACACA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [5,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-14.20,-14.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [83,97] Score: 0/0.18 # # Final direction: R [0,1.55 Confidence: HIGH] >NC_012943 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1293263 36 100.0 38 CACCCTGTCA .................................... CTTCAGCACCACCATCATCCGGCGCCTCAGCTCAGCAT 1293337 36 100.0 38 AGCTCAGCAT .................................... CCTTCGACGCCGGATTCGTGATCTCTTCCCGCGGATAG 1293411 36 100.0 36 CCGCGGATAG .................................... TGCCCCGGCGTTTAGCGATCACAACACCAACTAATG 1293483 36 100.0 36 CCAACTAATG .................................... CAGCGAAATACAGGCTCCACGACACGACCACAACGC 1293555 36 100.0 37 ACCACAACGC .................................... TCTTGACGATGCGGTTGCCCCGCGCCCTTTTCCAGCC 1293628 36 100.0 37 TTTTCCAGCC .................................... AGGTTCGCGTCAGACAGGTTCGCGTCGATCAAGTCCG 1293701 36 100.0 38 ATCAAGTCCG .................................... TTTATCACTCCCGACCAAATAGGTATCGGCGTGTTCAA 1293775 36 100.0 37 GCGTGTTCAA .................................... ATTTTGAGCGCGAACTCGTCCACAGTCCCCCTTTCAG 1293848 36 100.0 35 CCCCTTTCAG .................................... GCCCCGTGGATGGCGGATGCGTTGTGCGCGCAAGT 1293919 36 100.0 40 GCGCGCAAGT .................................... CCGACGATGGCCAGTAAATCGGCGTGGGTAACCGATCCGG 1293995 36 100.0 35 ACCGATCCGG .................................... CTGACGGCACGGAGCTTTCCGGCTTCTATCAGGTA 1294066 36 100.0 36 CTATCAGGTA .................................... CCTCATGGTGGGACATGGACGAGCGCGACTATCGGG 1294138 36 97.2 37 GACTATCGGG ......G............................. TGGACGCAGAATCGCACCGGGTGCGGGAGGTGCAGCA 1294211 36 100.0 40 AGGTGCAGCA .................................... GCATATCGCCCGCCACACCACAGCCACGCTACTGCTCCAT 1294287 36 97.2 40 ACTGCTCCAT ...C................................ ACACCGCCGATGACAGCTATGTCCGAGTGACATCCTCCCA 1294363 36 97.2 38 CATCCTCCCA ..................A................. TTGAACCGCCCTTCGCGCGGTGTTTCGGCCGTGCCCGA 1294437 36 100.0 CCGTGCCCGA .................................... TACGACGACT ========== ====== ====== ====== ========== ==================================== 17 36 37 GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [12,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.10,-6.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [33.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [99,150] Score: 0/0.18 # # Final direction: F [1.15,0.27 Confidence: MEDIUM] >NC_012962 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2858030 28 100.0 32 GGGGTCAAAT ............................ AAGCTGCCCTTTATCATCAACTAAGCAATCCA 2858090 28 100.0 32 AAGCAATCCA ............................ TTATGTGTAAAACCAGGTGATGCTGTTAAATT 2858150 28 100.0 32 CTGTTAAATT ............................ AACGATGTGTTATGCCTAAGTCAACTAGTGAA 2858210 28 100.0 32 AACTAGTGAA ............................ TAATTTTTCAAAAGAAAAGGACGCATTATTCA 2858270 28 100.0 32 GCATTATTCA ............................ GGAGTCTATAGCGAGTTCGGATCTGACAGCCA 2858330 28 100.0 32 CTGACAGCCA ............................ CCGACTATGACGGCGTGAGCATGCTTGCCGAG 2858390 28 100.0 32 GCTTGCCGAG ............................ TGCTCCAGCCCCAGTTGTTGAAAACAAACGCT 2858450 28 100.0 32 AACAAACGCT ............................ TGATTTATCCATAGAAACTACTGGTGATTTCT 2858510 28 100.0 32 GGTGATTTCT ............................ TCTAGCAAATACCGGCGCGTCTGAGTGCTCTC 2858570 28 100.0 32 GAGTGCTCTC ............................ TATTCAGTTCTGATTGCGCTTCAACACTTGGA 2858630 28 100.0 32 AACACTTGGA ............................ CCGAGGAACACGGTTCCCGCTTGTTCAGCAAC 2858690 28 100.0 32 GTTCAGCAAC ............................ TTTCGGCAGAGAAATAGCCATATGTTTTCTTT 2858750 28 100.0 TGTTTTCTTT ............................ TGTTGCATAT ========== ====== ====== ====== ========== ============================ 13 28 32 TTTCTAAGCTGCCTGTACGGCAGTGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [251,232] Score: 0/0.18 # # Final direction: R [0,1.01 Confidence: HIGH] >NC_012962 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3127400 28 100.0 32 TGTGCCCCCC ............................ CTCAAACCTACGAGATTTGTTACGTCGATTCG 3127460 28 100.0 32 CGTCGATTCG ............................ ACCCGCGAGGGGCGGGTCTCTGTTTTTTTCTT 3127520 28 100.0 32 TTTTTTTCTT ............................ TTCATTTTATAAAGCCTCGATTTTATACCCCT 3127580 28 100.0 32 TTATACCCCT ............................ GCGCAGTCATATCAGGGTTTACTGCGACGGCC 3127640 28 100.0 32 TGCGACGGCC ............................ AGCTACTTGTTGATGAAGTATTGGAGTATGCA 3127700 28 100.0 32 GGAGTATGCA ............................ TCCGGCTCGTTGCGGAATGTCTTGATTGAAAA 3127760 28 100.0 32 TGATTGAAAA ............................ GTGGCTGCGGCACAAGCGCGGGTTTCGTTTGA 3127820 28 100.0 TTTCGTTTGA ............................ TGTTAAGAAT ========== ====== ====== ====== ========== ============================ 8 28 32 TTTCTAAGCTGCCTGTGCGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [31.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [100,131] Score: 0/0.18 # # Final direction: R [0,1.01 Confidence: HIGH] >NC_012962 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3133243 28 96.4 32 AATAATTATA -........................... TATGAACATTATCTTCATCAAATCTCAGCTCT 3133303 28 100.0 32 TCTCAGCTCT ............................ CGCTATGTTCATTCATCTTCAATTGCGGCGCT 3133363 28 100.0 32 TTGCGGCGCT ............................ TTTTAGACCTGTAGCTATTTCACCAACTGACT 3133423 28 100.0 32 CCAACTGACT ............................ AGCCTCTTGTCAGAGTAACGCATCCAATTGAC 3133483 28 100.0 32 TCCAATTGAC ............................ TTTTCTATGACATTCTTTTGTCAGATGGATTT 3133543 28 100.0 32 AGATGGATTT ............................ CTACGTTAGTCAATGTTACGAGACCGGCTGTA 3133603 28 100.0 32 ACCGGCTGTA ............................ GCTTAGGTCACTTCATGGCTAAACATGATGAT 3133663 28 100.0 ACATGATGAT ............................ TGTTACATATT ========== ====== ====== ====== ========== ============================ 8 28 32 TTTCTAAGCTGCCTGTACGGCAGTACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [141,1725] Score: 0.18/0.18 # # Final direction: R [0,1.33 Confidence: HIGH] >NC_013016 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================== ====== 2116491 26 100.0 46 NNNNNNNNNN .......................... CATCGGTCTGCCGTTACAACACGGTTTCTTTAGATTTTACGTTCTG 2116563 26 100.0 42 NNNNNNNNNN .......................... GTCTTTTATAAACTTTGAATATTGCTGTTATCCCAAGGTCTG 2116631 26 100.0 1 NNNNNNNNNN .......................... NNNNNNNNNN ========== ====== ====== ====== ========== ========================== 3 26 44 GATTCCCGCCTGCGCGGGAATGACGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [4,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.60,-6.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [60.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [343,35] Score: 0.18/0.18 # # Final direction: F [0.45,0.37 Confidence: LOW] >NC_012997 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================== ====== 4834731 22 95.5 49 TCGGAATCGG ....T................. AGTCTTCAGTGACGCGGATGAACTACCAGCCAGCTGCACTCGATTAACG 4834802 22 100.0 49 TCGATTAACG ...................... GACCTTCAGCGACGCTACGAGTATTTCAACCGATGCGTGCAAAACTGCA 4834873 22 100.0 49 CAAAACTGCA ...................... AGCCTTCAGCGACGCAGTAATCATAAACAAAGCAGTGGCATTGCTGCAG 4834944 22 100.0 51 ATTGCTGCAG ...................... GACCTCCAGCGACGCGCCCCCACTGCGGGAAACTGGACTACACACAGCCGG 4835017 22 100.0 49 ACACAGCCGG ...................... GACCTTCAGTGGCGCGAGAGGTAAAACCGATTTTTTTCTACTTTTTGTA 4835088 22 100.0 48 ACTTTTTGTA ...................... GACCTCCAGCGACGCAAGAATATTCAGGATCAGCAGTTAAGCGAGCAG 4835158 22 100.0 49 AAGCGAGCAG ...................... AGCCTTCAGCGACGCTTTAAGCCGCACCCCGCCCGCAACAGTAACTATT 4835229 22 95.5 51 AGTAACTATT ...............A...... AGCCTTCAGCGACGCCCCTCGCTGGATCGCGTGCTACACCGCAAGCCGAAC 4835302 22 100.0 49 CAAGCCGAAC ...................... GACCTTCAGCGACGCGCTCTCAGCCTGATTAAGACTAGAGAGAAGGAGC 4835373 22 100.0 50 GAGAAGGAGC ...................... AGCCTTCAGCGACGCGAGCTTAGAGACGAATATTCAGACGACGATTTCGC 4835445 22 100.0 50 ACGATTTCGC ...................... AGCCTTCAGCGACGCGAAAGCGTGCTGTCAGAAATGAATGCGTTTATTTT 4835517 22 100.0 49 CGTTTATTTT ...................... AGCCTTCAGCGACGCATCTCCGGCATTTCTTGTTGTCCCGCCCGAGCGA 4835588 22 100.0 50 GCCCGAGCGA ...................... GACCTCCAGCGACGCCATCACTGGCTTATAACGCTTAACCGGTTTCACAT 4835660 22 100.0 48 GGTTTCACAT ...................... GACCTCCAGCGACGCTAGCGAGTATCAGGAGAGCCACGATAAGTTAGT 4835730 22 100.0 50 ATAAGTTAGT ...................... GACCTCCAGCGACGCACTGATGAGGCGAGAGAACCAGAAGATTTTGTAAG 4835802 22 100.0 50 ATTTTGTAAG ...................... GACCTCCAGCGACGCCCCATAAGCCCGGAACTCGCAGCCGAAGTTAAAGA 4835874 22 100.0 49 AAGTTAAAGA ...................... GACCTCCAGCGACGCCACTGTAGACATCCGCCCATCTTCAGAGCGCAGC 4835945 22 100.0 50 AGAGCGCAGC ...................... GACCTCCAGCGACGCAGCAAGCAGCGGCGGAAGTGGTTAAGGCTAACGAG 4836017 22 100.0 50 GGCTAACGAG ...................... GACCTCCAGCGACGCAGCCATTTGATTAATATTTACTCTTTGTATATCCA 4836089 22 100.0 51 TGTATATCCA ...................... GACCTCCAGCGACGCCATGAACTTGATGTGTGTGGGCATCACGAGCGCCCA 4836162 22 100.0 49 CGAGCGCCCA ...................... GACCTCCAGCGACGCAGCTGTAATACCCACCGCCCCCAAAAACGAGGAC 4836233 22 100.0 49 AAACGAGGAC ...................... GACCTCCAGCGACGCCGATGCCGATGAAGCCATCGCGGGGTTGGGTGTG 4836304 22 100.0 49 GTTGGGTGTG ...................... GACCTCCAGCGACGCCAGACCTTAAAACCGATAGCGATTTCGCTACGGC 4836375 22 100.0 49 TCGCTACGGC ...................... GACCTCCAGCGACGCGGGCTCCCGTGTGGATGTGTATACAGCCGAAACC 4836446 22 100.0 49 AGCCGAAACC ...................... GACCTCCAGCGACGCTTTCTAGCCATATCAAGCCCTCAACAAACAACGT 4836517 22 100.0 CAAACAACGT ...................... GACCTCCAGCG ========== ====== ====== ====== ========== ====================== 26 22 49 GTTTCAACAGCCTTAGCGGCTA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [50.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [130,617] Score: 0.18/0.18 # # Final direction: R [0.27,0.96 Confidence: MEDIUM] >NC_012997 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 3463277 32 100.0 35 NNNNNNNNNN .C.CTCCC........................ GTTGGCCGGTGGACGTAATCTACGAGGCGATATTC 3463344 32 100.0 35 NNNNNNNNNN ................................ TTACCGCACGAGCAAAGGCCCTGGGACGCCTACAA 3463411 32 100.0 34 NNNNNNNNNN ................................ GGCGATTTGAATCTGTTGTTTTGGCCCATGTAAT 3463477 32 100.0 34 NNNNNNNNNN ................................ TATGTTAACCACACCTAACCCTTCATCCGTCGCC 3463543 32 100.0 33 NNNNNNNNNN ................................ AGCACAGATACAGAAGCTGCTTGACGAGGCCGA 3463608 32 100.0 34 NNNNNNNNNN ................................ ACCCATGAGTACAAAAAATAGCGTACCCGCTCAC 3463674 32 100.0 34 NNNNNNNNNN ................................ AAAAGTAACACTATCAAAACCCATTATTCGAGAA 3463740 32 100.0 34 NNNNNNNNNN ............C................... TTTTTCTGTTGAGTGGGTACCGGGGGTACATCAT 3463806 32 100.0 34 NNNNNNNNNN ................................ TTCAAAAGCCGGGGTCATAAATCACCAACACCGG 3463872 32 100.0 35 NNNNNNNNNN ................................ CTTGGCTTTTAGCTGATCTAGCAAGCCCTGATGTC 3463939 32 100.0 34 NNNNNNNNNN ................................ AAAGGCGAAAGCTGAACCCGAAGAGGTCGAACCA 3464005 32 100.0 34 NNNNNNNNNN ................................ GTTGGAGCTGCATGTTCAGCCAATCCCACACAAC 3464071 32 100.0 34 NNNNNNNNNN ................................ AAGCGTCCAGCGTTGCATAATTCACATGCGTATC 3464137 32 100.0 35 NNNNNNNNNN ................................ CTCCAATGCTTGCGCCTGCAATTCTGCCGCAATGG 3464204 32 100.0 34 NNNNNNNNNN ................................ TTGCCGTAGTTTTTCAAAATGCGGGCTGCAGCAC 3464270 32 100.0 34 NNNNNNNNNN ................................ GATAGGCGGGTTTATCCCGGTCCCGTCTAAATGG 3464336 32 100.0 35 NNNNNNNNNN ................................ TCATTGACAACATGATAATGCTCGGCCTCGACCCT 3464403 32 100.0 35 NNNNNNNNNN ................................ TCGCCAGGCGAGTTATCAGTCCAATTGCTATCAAT 3464470 32 100.0 35 NNNNNNNNNN ................................ CTGCTCTGCCGTATAGCCGGTTATTTCGTATTCGC 3464537 32 100.0 34 NNNNNNNNNN ................................ AGCCGCAGCGGTATCAGCTGGGGCCGTAGCGCGA 3464603 32 100.0 34 NNNNNNNNNN ................................ GTTAAAGCATTGGGCGCCAACAACACGACCATCA 3464669 32 100.0 34 NNNNNNNNNN ................................ TCGTAGCTTGCACCGGTGCCCTTGGTGTGAAACT 3464735 32 100.0 34 NNNNNNNNNN ................................ AACGGGTGGCGCTTAACCGCCATAAATCATAATT 3464801 32 100.0 34 NNNNNNNNNN ................................ AATCGCTCGCGCTAACGCCGCATATGCGGACGGA 3464867 32 100.0 36 NNNNNNNNNN ................................ CTCAGATCTTGTGATGCTCCGTTGAGCAAAATCCGG 3464935 32 100.0 33 NNNNNNNNNN .......................A........ GATAATACAAAGGCTTGGCGCTATGGGATGCGG 3465000 32 100.0 34 NNNNNNNNNN ................................ AATAGATATTTTGCCATCACCATCTTTGCACATA 3465066 32 100.0 34 NNNNNNNNNN ................................ AAAAGTGCGTATACAGATTATGCGCTCACTTGAT 3465132 32 100.0 34 NNNNNNNNNN ................................ ACTTATTGAGGCCATAGCCGACGCAGTTATTGAA 3465198 32 100.0 33 NNNNNNNNNN ................................ CCCACGTCATTAAAACCGCGATACGCAAACGAC 3465263 32 100.0 1 NNNNNNNNNN ................................ NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 31 32 34 GTTTCAATCCACGCGCTCGCGAGGAGCGCGAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [7,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.10,-7.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [75,180] Score: 0.18/0.18 # # Final direction: R [0.37,5.46 Confidence: HIGH] >NC_013016 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 367845 23 100.0 43 NNNNNNNNNN ....................... TTCTATTATAAAAGCTGCCTGACTTACTCGGTTGTAGCTCCCT 367911 23 100.0 43 NNNNNNNNNN ....................... GTGCAGTAGATTGACCACTGCACACGGCGGGTTGTAGCTCCCT 367977 23 100.0 1 NNNNNNNNNN ....................... NNNNNNNNNN ========== ====== ====== ====== ========== ======================= 3 23 43 TTCTCATTTCGCAGTGCTACAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.87%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [301,250] Score: 0/0.18 # # Final direction: NA [0,0 Confidence: NA] >NC_013062 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =========================== ====== 869411 27 100.0 51 NNNNNNNNNN ........................... ACCTCGCCACTGGATTTTTCATCCATCAACGCCTGCAGTTGTTTTTGGTTC 869489 27 100.0 52 NNNNNNNNNN G...C...................... GCCCTGCTTACTGGATTTAGCCGACAAACTCCTTTAGCTGTATTTGCTACTG 869568 27 100.0 52 NNNNNNNNNN .....A..................... ACCTCACACACTAAATTTTATCAGATTACCATCTGCGGAGGGTCTAGGTTTC 869647 27 100.0 1 NNNNNNNNNN ........................... NNNNNNNNNN ========== ====== ====== ====== ========== =========================== 4 27 51 TTTTTGGCGCTCGCTTCGCTCGCGCCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.60,-2.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [60.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [194,11] Score: 0.18/0.18 # # Final direction: R [0.45,0.78 Confidence: LOW] >NC_013093 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 7563543 19 100.0 41 NNNNNNNNNN ................... GTGTCGTCGCAGCCGAGCGCCCCGTCTCCGGTGTCGTCGCA 7563603 19 100.0 41 NNNNNNNNNN ................... AGCACGCCGACCCCGAGCACGCCGCCTCCGGCCGGCTCCAC 7563663 19 100.0 71 NNNNNNNNNN ................... GCCAGCCCGACGTCCGGCACCTCCACGCCGAGCACCCAGTCGCCCGGCACCCAGTCGCCCGGCACGCCGTC 7563753 19 100.0 38 NNNNNNNNNN ...C.........T..... GCGAGCCAGTCGCCGAGCACGCCGCAGGCCAACCAGAC 7563810 19 100.0 26 NNNNNNNNNN ............C...... GCAGGCCCGACGCCCGGTGTCACCTC 7563855 19 100.0 1 NNNNNNNNNN .........T..TG.G... NNNNNNNNNN ========== ====== ====== ====== ========== =================== 6 19 43 GCCGAGCACGCCGACCCCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [3,] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [20.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [3297,1370] Score: 0.18/0.18 # # Final direction: F [0.96,0.27 Confidence: MEDIUM] >NC_013156 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1343405 30 100.0 35 TTATCGCCCT .............................. TTGTGGGATTTAATAACATTGGCAAAAAAAATTAT 1343470 30 100.0 39 AAAAAATTAT .............................. TCTGTATCTGGTTCTATTCTGGCTTTTATAGGTATGTTA 1343539 30 100.0 37 AGGTATGTTA .............................. CTTAGATGGCGGCCTTTCTTTCAGCTCAGCTATTGCC 1343606 30 100.0 38 AGCTATTGCC .............................. TACGTTGAATTATCATAGACTTCAATTGTTATAACGTG 1343674 30 100.0 TTATAACGTG .............................. AATTCCCCAT ========== ====== ====== ====== ========== ============================== 5 30 37 GTTAAAATCAGACCGTCTCGGTATGGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: F [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 90% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-3.70,-3.70] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [73.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [394,72] Score: 0.18/0.18 # # Final direction: F [0.68,0.27 Confidence: MEDIUM] >NC_013156 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 531680 29 100.0 36 TGGTATTATG ............................. AATATGCGTGATTAAGCCATGCTGTCTAATTTGTAA 531745 29 100.0 38 TAATTTGTAA ............................. TTAATTGATGAAGGATATAAAAAAGAGAGCATCTACAA 531812 29 100.0 43 GCATCTACAA ............................. CAGGACTTTATTACTGCACTCCCAACCTGCTAACTTTAGAAAA 531884 29 100.0 41 CTTTAGAAAA ............................. TTTAGGTAGCTCTTCAAAGCCTGACTTAGACGATGCTCCCA 531954 29 100.0 36 GATGCTCCCA ............................. ATGTGTTGTTACAATATGAGCTAAGATAACAAGGTA 532019 29 100.0 TAACAAGGTA ............................. AGGCAATTAT ========== ====== ====== ====== ========== ============================= 6 29 38 TTTCCATTCCGAAACGGTCTGATTTTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.07%AT] # Reference repeat match suggestion: R [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-1.50,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [178,371] Score: 0.18/0.18 # # Final direction: R [0,1.05 Confidence: HIGH] >NC_013124 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1000880 28 100.0 33 NNNNNNNNNN ............................ TACTTGACCACCATGTGCAGCACACAGATACCA 1000941 28 100.0 33 NNNNNNNNNN ............................ GGGTCGCCAGCGCGGAGGGCGTCGAGGATCGGG 1001002 28 100.0 33 NNNNNNNNNN ............................ ACGTGGGACCTCCAGATCGCCGGACAGACGACC 1001063 28 100.0 33 NNNNNNNNNN ............................ TTGAGGGTGGCGGGTGAGGTACCCCAATGCGAG 1001124 28 100.0 33 NNNNNNNNNN ............................ GAGGGTGACGCTCTCGACCGGATCGCGGACCTC 1001185 28 100.0 33 NNNNNNNNNN ............................ GGCTACTCAGTGGTCAGTCTTGAGGAGACCCCG 1001246 28 100.0 33 NNNNNNNNNN ............................ CCGTCGGCGACCTCTCTGGTTGCCTTGTATATC 1001307 28 100.0 33 NNNNNNNNNN ............................ TCGAACAGCACGAGCGACGAGCCGACCTGCAAC 1001368 28 100.0 33 NNNNNNNNNN ............................ CTAACGTCACATGGTATGTGGTGATGCTCAGGA 1001429 28 100.0 34 NNNNNNNNNN ............................ TGCGATAAGCCATGGGGAGCTGTCGACCAAGCGT 1001491 28 100.0 33 NNNNNNNNNN ............................ GGCCTCACCGGCCTCACCACGACCCGCCAAGTC 1001552 28 100.0 33 NNNNNNNNNN ............................ TGCTGAACTCGTGATCGTGTTCCCCGCCAAGTA 1001613 28 100.0 33 NNNNNNNNNN ............................ CGAAGTCCCAGCTCAGGGGCACTGGGGGAAAAA 1001674 28 100.0 33 NNNNNNNNNN ............................ TGCCCGCCGATCCCGTAGCCATCGACCGGATCG 1001735 28 100.0 33 NNNNNNNNNN ............................ ACCTCGTTGACCCCGAGGTTCTCCACAATCGTC 1001796 28 100.0 33 NNNNNNNNNN ............................ CTCGCTCCTCCCTCTTCGTCCTCTCGTCCCCAC 1001857 28 100.0 33 NNNNNNNNNN ............................ GGTAGGGGCCGTGCTCATCGCTGAGGGCGCTGG 1001918 28 100.0 33 NNNNNNNNNN ............................ CCGTTCGTTGCCCGGGGCAACGCAGCCCACTGG 1001979 28 100.0 33 NNNNNNNNNN ............................ CGCCGTTACCGATCACGATCCAACCGGGAAGCA 1002040 28 100.0 33 NNNNNNNNNN ............................ TCGCGTTGATGACCCGGACGAGCTCTGGCTGGC 1002101 28 100.0 33 NNNNNNNNNN ............................ TTGATGCAGACCAGTGCTGATCCGCGCATCGAC 1002162 28 100.0 33 NNNNNNNNNN ............................ TGCCGTGGCGACCTGCGCGTCGTCGGCGTTCAG 1002223 28 100.0 33 NNNNNNNNNN ............................ ACCATAGCGTCGAGGGGGTACTGCGGATGAGCA 1002284 28 100.0 33 NNNNNNNNNN ............................ CTGCTATCGATGACTGCTCTCATGCTCTTCAGA 1002345 28 100.0 33 NNNNNNNNNN ............................ CAAGTTCAGCTTCAGAATGCGTACTGAGTCGGA 1002406 28 100.0 33 NNNNNNNNNN ............................ GTCAGTTGACAGATCGACTACCTGAGGCGACTC 1002467 28 100.0 33 NNNNNNNNNN ............................ CCGTCGTGATTCTGTCCTTCTTCGGCGTGGTGA 1002528 28 100.0 33 NNNNNNNNNN ............................ GAGTTGTCGAGGTGCATGTGCTCCGAGCAAGGG 1002589 28 100.0 33 NNNNNNNNNN ............................ AGCTCGCGTTGCGGGTCGTCACCAGGCACGAGG 1002650 28 100.0 33 NNNNNNNNNN ............................ CCCCAGTCGCCCGAGAAGCTGAGCTTGTCCGAG 1002711 28 100.0 33 NNNNNNNNNN ............................ TCAACCGCGTGCCCCCCACCCGCGAGGCCAAGC 1002772 28 100.0 33 NNNNNNNNNN ............................ GGAATCTTGACTACTTCACCATCCACTGCCTCC 1002833 28 100.0 33 NNNNNNNNNN ............................ TCAGCCTGAGACTCTCTGATGATGGATACCGCC 1002894 28 100.0 33 NNNNNNNNNN ............................ TACATTGCCTTCACTGGCCCGTACCTGACCCAG 1002955 28 100.0 33 NNNNNNNNNN ............................ TGCTCCCGTTGCTGTCGCAGTGCGTTGGCCATG 1003016 28 100.0 33 NNNNNNNNNN ............................ CCGATAGTCCCGAAGATCGGAGAGTATCCCGAA 1003077 28 100.0 33 NNNNNNNNNN ............................ GTCTCACTCGGGAAGAGCTCGAGGAGTCTCCGC 1003138 28 100.0 33 NNNNNNNNNN ............................ CCAACCCACATGACCAACGTCGGCCCGGTTCGA 1003199 28 100.0 33 NNNNNNNNNN ............................ TTCCGTGTGCGGCCCGTACTTACCAGTCATCCC 1003260 28 100.0 33 NNNNNNNNNN ............................ ATGTCGTCTGTGTAGGTAGTCACTTCTGCCACC 1003321 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 41 28 33 GGATCACCCCCGCCTGCGCGGGGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [4,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [38.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [47,20] Score: 0/0.18 # # Final direction: R [0.37,0.64 Confidence: LOW] >NC_013124 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 996601 28 100.0 33 NNNNNNNNNN TACA........................ CTCGCCAGCAACGTCACGGACCACACCGAGGTC 996662 28 100.0 33 NNNNNNNNNN ............................ CGAAATCCAGTTGAGCCAGGCGCAAGTTCAGGC 996723 28 100.0 33 NNNNNNNNNN ............................ CCCAACGCACTCCTCGTCCGCACGCCCGAGGAG 996784 28 100.0 33 NNNNNNNNNN ............................ TCAGTCAACGCGGCCAGCCGCGCGCAAGTACGG 996845 28 100.0 33 NNNNNNNNNN ............................ TCGACGGTGATCCCCTCAATCTCGGTCTGGCCG 996906 28 100.0 33 NNNNNNNNNN ............................ CAGAACCTGGCCATCCAGCAGTCGAGCGTCGCC 996967 28 100.0 33 NNNNNNNNNN ............................ TCCGTCATCGCGTCCTTTCTTGAGTCCTGCTGA 997028 28 100.0 33 NNNNNNNNNN ............................ CCCGCCGCGACCGACAGCCGCAGGCGATCTTCG 997089 28 100.0 33 NNNNNNNNNN ............................ GACGTGGGTGCCCCTCACCGACGCGAGCGGGTC 997150 28 100.0 33 NNNNNNNNNN ............................ TATCTATCCACCGAACCTGGCGAGCGCCCAGGT 997211 28 100.0 33 NNNNNNNNNN ............................ AGCTTGCCCTCAATCTCCAGCAATCCACGTACC 997272 28 100.0 33 NNNNNNNNNN ............................ AGATCCCACACAAGGACGCCCTCGGGGAGCTGG 997333 28 100.0 33 NNNNNNNNNN ............................ ACGCGGGGTGGTACGGATCCATCCTCAACGCGC 997394 28 100.0 33 NNNNNNNNNN ............................ ACGACCACCACCACGTCGTCGGGCTTCGGCTTC 997455 28 100.0 33 NNNNNNNNNN ............................ CACGCGCGGATTGCTCATGTAACGCCACGCGGC 997516 28 100.0 33 NNNNNNNNNN ............................ CGACCATCAGAAGCTTCGGTTGGCGACCGAGAA 997577 28 100.0 33 NNNNNNNNNN ............................ CGCTTTGCAGCGGCGTGAGGCCGAAGGTACTGC 997638 28 100.0 33 NNNNNNNNNN ............................ AAAAGCCCGACGGGGAGTATTGCATGCGACGCC 997699 28 100.0 33 NNNNNNNNNN ............................ ACCCGTGAAGAGATGCGCTCGTGGGTAGAGCGC 997760 28 100.0 34 NNNNNNNNNN ............................ CGGTAATGCCCACTTCTGTCTCCTTTCTGCTCAC 997822 28 100.0 33 NNNNNNNNNN ............................ CTCACCTGCGCGGCGCGCTGAGCCAGGAATGTC 997883 28 100.0 33 NNNNNNNNNN ............................ TTGGGCAGCTCAGGACAGTAGACCTCCGCTGCG 997944 28 100.0 33 NNNNNNNNNN ............................ ATCGCCCTTGGCCTTGGCCTTGGCTGCCTCAGC 998005 28 100.0 33 NNNNNNNNNN ............................ TCGGCGTCCTTCGCCACCCAGTTCGGGAGGTGC 998066 28 100.0 33 NNNNNNNNNN ............................ ACGGTGGCCTGGGGGCTGTCGCCGGGCTGGATC 998127 28 100.0 33 NNNNNNNNNN ............................ TACTTGACCACCATGTGCAGCACACAGATACCA 998188 28 100.0 33 NNNNNNNNNN ............................ GGGTCGCCAGCGCGGAGGGCGTCGAGGATCGGG 998249 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 28 28 33 GGATCACCCCCGCCTGCGCGGGGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [4,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [35.0-35.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [331,70] Score: 0.18/0.18 # # Final direction: R [0.55,0.78 Confidence: LOW] >NC_013131 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 4439287 25 100.0 36 ACGGCCGTTG ......................... CACAAGCGCGCGGCGCAGGAGTTCGGCACACAGTGA 4439348 25 100.0 36 CACACAGTGA ......................... CACTGGAGATCGAACTCCATGCGGGCGATCCCGGCG 4439409 25 100.0 36 GATCCCGGCG ......................... CACGAAATCGGTGGTGGCCGCCGGGATCCGCAGCAG 4439470 25 100.0 36 TCCGCAGCAG ......................... TACGTTCTACCGGTACTGCCAGTACCGGTCGCACCG 4439531 25 100.0 36 GGTCGCACCG ......................... TACGAATCCCCCCAAGGAGTCCGGACCCCTCTTTTG 4439592 25 100.0 36 CCCTCTTTTG ......................... CACCACCTGACGTGCGCCGATGGAGTAGATGCGCAG 4439653 25 100.0 36 AGATGCGCAG ......................... CACATCGGCGACCTGGCGCACGCGATCGAGTTCCCG 4439714 25 100.0 36 CGAGTTCCCG ......................... CACCTGCTGGTTCGGGACTGCATCAGGCTTCGGAGA 4439775 25 100.0 GCTTCGGAGA ......................... CACGCTGCGTGAC ========== ====== ====== ====== ========== ========================= 9 25 36 GGACCAGCCCCGCACGCGCGGGGAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [4,] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.50,-2.70] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [33.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [1963,2144] Score: 0/0.18 # # Final direction: F [0.37,0.27 Confidence: LOW] >NC_013131 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 4411089 29 100.0 32 NNNNNNNNNN ............................. AAGAAGGCGGCGCAGGAGTTCGGGAACCAGTG 4411150 29 100.0 32 NNNNNNNNNN ...........T....G..........G. GCTCCCGATCACGTCGCCGAACACCTGGAGTC 4411211 29 100.0 32 NNNNNNNNNN .....T....................... GAACCCCAGGCCAGGGACAGCACACTGCCCAC 4411272 29 100.0 32 NNNNNNNNNN ..........G.................. GACCAGAATGTCGCGTGGAACTCGGGATACCG 4411333 29 100.0 32 NNNNNNNNNN ............................. ACGATGCCCGCGATGATCAATAGGAGGCTGCC 4411394 29 100.0 32 NNNNNNNNNN .................C..A........ CTACTGAAGGAGTTGACATGACAGCCCGCGCC 4411455 29 100.0 32 NNNNNNNNNN ............................. TCCGAGGCCGTCATCACGTGCGCCCACAGCAG 4411516 29 100.0 33 NNNNNNNNNN ............................. CGATGGCGGCGACGAACACGAGGAATTCCGCTG 4411578 29 100.0 32 NNNNNNNNNN ............................. CACACAGCCGACGGAACCCTGGTCGGCATGCA 4411639 29 100.0 32 NNNNNNNNNN ............................. GCCCGCGCCCGCGAGGCCGCCGGCCTCGACGT 4411700 29 100.0 32 NNNNNNNNNN ............................. TCGTAAACTTCCATGATATGGGTCGGACTGGC 4411761 29 100.0 32 NNNNNNNNNN ............................. AACGAGCGCGAGGGCCAGGAGGAGTCCGCGGA 4411822 29 100.0 32 NNNNNNNNNN .....T....................... CATCCGAGTACTGACCTTGAGGACGGACCAGT 4411883 29 100.0 32 NNNNNNNNNN ..........................AG. CTGAGCGTGAGCTGGCCTGTCATCGACATGAC 4411944 29 100.0 32 NNNNNNNNNN .....................A....... CGACTTCATGGACCTGGAGTGCACATGGTGCG 4412005 29 100.0 32 NNNNNNNNNN ............................. GTCCACGCATGCCAGTACGAACAGGTCGTGCG 4412066 29 100.0 32 NNNNNNNNNN ............................. CGAAGGTCCCGGCCGGGTGGCTGGGATCTTGG 4412127 29 100.0 32 NNNNNNNNNN ............................. AACAGCGCGTTCAAGGAGGGCTGGATCCCGCC 4412188 29 100.0 32 NNNNNNNNNN ............................. GCATCCCACATCCACGGCCGACCGCGGCCGCA 4412249 29 100.0 32 NNNNNNNNNN ............................. GTCATGCGAACACAGTGGCAGAGATATCCGAC 4412310 29 100.0 32 NNNNNNNNNN ............................. GTCACGCTGCACCTGGTTGATGCGGCTGAACA 4412371 29 100.0 32 NNNNNNNNNN ............................. CGAGGTGGAGCCCGCACGGCTCCGCAACCGAA 4412432 29 100.0 32 NNNNNNNNNN ............................. TCCTGCCCTTTCAAGCCGAAGGTGTTCATCGC 4412493 29 100.0 32 NNNNNNNNNN ............................. CGTGACTACCCGCTCGGCCGCAGTGGGGCCGG 4412554 29 100.0 32 NNNNNNNNNN ............................. CACCCGGACCGTGAACGACTCCTCAAGCGGGC 4412615 29 100.0 32 NNNNNNNNNN ............................. TCAGCGAGTTTCGGCGTGTTCAGCAGGGTCTT 4412676 29 100.0 32 NNNNNNNNNN ............................. TCTACGGCGGTTACCGCCCCTGACGGGGCAGA 4412737 29 100.0 32 NNNNNNNNNN ............................. GCGGCAGACGGCGTCAACTACTACTACGGCCT 4412798 29 100.0 32 NNNNNNNNNN ............................. CCAGGGTGCTAATGGTGCCGATGAACGCGCTC 4412859 29 100.0 30 NNNNNNNNNN ............................. CCGAAGCTTCCGCGTCGAGACATGCGATCC 4412918 29 100.0 32 NNNNNNNNNN C............................ AGGCCGTGGGTACGTACGACCGGCGGCTGCCG 4412979 29 100.0 32 NNNNNNNNNN ............................. CTCAAGATCTCCCCCGAGGTCGGGTGGTACCT 4413040 29 100.0 32 NNNNNNNNNN ............................. TAGACGTCGGACTGCTCGGCCTGCAGGCGCAA 4413101 29 100.0 32 NNNNNNNNNN ............................. TCGGCGGGCTGGTCGTCGTCCTCGTCGGGACA 4413162 29 100.0 33 NNNNNNNNNN ............................. CGTTCGTGAACGGGCCGCGTTGCGAGCTGATTA 4413224 29 100.0 32 NNNNNNNNNN ............................. CTGGAGCCACTGATCGGCGCGCTGGGGACCGC 4413285 29 100.0 32 NNNNNNNNNN A............................ CAGGTCGTACGTTACAGCCGTCCCCTCCTCTC 4413346 29 100.0 32 NNNNNNNNNN ............................. CCCGCGCTCAGCGGGAGCCGGGGACGCTGCCG 4413407 29 100.0 32 NNNNNNNNNN ............................. AGATGCATGCAGTCGTCGTAGCTCAGACCGCC 4413468 29 100.0 32 NNNNNNNNNN ............................. CTCGGCATCTCCAAGGCCACCGCCCACCGCTC 4413529 29 100.0 32 NNNNNNNNNN ............................. ATGGCGTTGAGTTGCGCGTTGAAGTCGGAGGC 4413590 29 100.0 32 NNNNNNNNNN ............................. CCGGCGTCGGTTCAGTCGTTGAGGCGGTAGCC 4413651 29 100.0 32 NNNNNNNNNN ............................. CCGTCAACGGCGTCACCATGCTGAACGATTTC 4413712 29 100.0 32 NNNNNNNNNN ............................. CGCTCAATGAACTCGTGGTCGCGGACGGCCTT 4413773 29 100.0 33 NNNNNNNNNN ............................. CTGTGACCAGTCCATGCGGTCGAAGTCCGAACG 4413835 29 100.0 34 NNNNNNNNNN T............................ CTTTTTGCCGTCTGGAGCAGCGCGAACTGGATCC 4413898 29 100.0 31 NNNNNNNNNN ............................. AGAACCCCCCGACGTCCGGGCGACGTCGGGG 4413958 29 100.0 32 NNNNNNNNNN ............................. TAGCCATACACCTGCGCAACCCTTTCGGCACT 4414019 29 100.0 32 NNNNNNNNNN ............................. TTCCTGATCAAACGGGACCTGGACGAAGCGCT 4414080 29 100.0 32 NNNNNNNNNN ............................. TTGCCGGCGCCCTGGCCCACCAGGCGCGTCTC 4414141 29 100.0 32 NNNNNNNNNN ............................. CCCGAATGCCTGGACAGCGAAGGCGGACCGCT 4414202 29 100.0 32 NNNNNNNNNN ............................. TCCGGTGCAGGTCGGTACGGAAATCCCCGCTG 4414263 29 100.0 32 NNNNNNNNNN ............................. TGTCGGCCACGTCGGGCCCCTTTCGTTTCGTG 4414324 29 100.0 32 NNNNNNNNNN ............................. TACGACGCGATCCTGGCCAGGCCGCCGTGCCA 4414385 29 100.0 32 NNNNNNNNNN ............................. AGCCCATTCGCCTCGGCGTAGCGGCGCACCTC 4414446 29 100.0 32 NNNNNNNNNN ............................. AAGCTGTGGTTGTCGGCCGCGCGCTGGGCCCA 4414507 29 100.0 32 NNNNNNNNNN ............................. CTGAAGGCGATGATCCGTGTCCACGGGCCCGC 4414568 29 100.0 33 NNNNNNNNNN ............................. CAGCCTGTCGTAGGCCTCCAGCGCACGCTCGGC 4414630 29 100.0 31 NNNNNNNNNN ............................. GCATCGACGACTTCGACAGCACGGCCGACCT 4414690 29 100.0 31 NNNNNNNNNN ............................. CGGGGCCGCGTCGGTCCAGATCTCCAACAGC 4414750 29 100.0 32 NNNNNNNNNN ............................. ATCGGATCGTCGGCACAACCCCAGTTCCTGAC 4414811 29 100.0 32 NNNNNNNNNN ............................. CGGAGACACCGGTTCTCCGTCCGGAAGATGTC 4414872 29 100.0 32 NNNNNNNNNN ............................. GGCCGAGGGTGCGGACGGCGCGGTATTGCAGG 4414933 29 100.0 32 NNNNNNNNNN ............................. AACGGCGTCACCAGCAACTACAACTGGGAGGC 4414994 29 100.0 32 NNNNNNNNNN ............................. CGAACCTGCTGCAGGTCGCCCTCGAGCAGGCC 4415055 29 100.0 32 NNNNNNNNNN ............................. ATAGCAACTCAGGACACTGACACGGTAAGATC 4415116 29 100.0 32 NNNNNNNNNN ............................. CGTTTCGTTGTAGATCGACATCCGCGAGTAGA 4415177 29 100.0 32 NNNNNNNNNN ............................. TCGGAATGTTTTCAGGCCTTGAGGTGATCTTG 4415238 29 100.0 32 NNNNNNNNNN ............................. GCTCCGGGGTCAGGTGGGAGTCCGGCGCCCCG 4415299 29 100.0 32 NNNNNNNNNN ............................. CTCAGGTCCCTTCCTAGGCGACAACGTGTGTT 4415360 29 100.0 32 NNNNNNNNNN ............................. ACATCAAGGGACTACCTGAAGGGAGTGCGCCG 4415421 29 100.0 32 NNNNNNNNNN ............................. GATCGACGCGGAGATGGCGGTGTCGCTGTGAC 4415482 29 100.0 32 NNNNNNNNNN ............................. GCCGGTCCGGCGCCGGTGAGCCGGAGTCCGCT 4415543 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 74 29 32 GGGATCAGCCCCGCGCCTGCGGGGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [4,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-13.00,-12.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [56,844] Score: 0.18/0.18 # # Final direction: F [0.74,0.59 Confidence: LOW] >NC_013156 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 281438 30 100.0 42 CAAATTGAAA .............................. TAGAAGATTTGAAAATGTTTCAACTGTAGAGATTCAACCAAA 281510 30 100.0 40 TTCAACCAAA .............................. AAGAGTGATGAAAAATGGTAGGAATATTTTTTGATATACA 281580 30 100.0 42 TTGATATACA .............................. GATTTTAACAGTTAAAAAATTAGTAAATGAAAGGTGAAAATA 281652 30 100.0 36 GGTGAAAATA .............................. GTGTGTTTTCAGTTAATGAGGACTTTGCGCCTGCCA 281718 30 100.0 36 GCGCCTGCCA .............................. AACAAGAAAAGACGATTTGAGAGAAGAGAGAGAAAG 281784 30 100.0 36 AGAGAGAAAG .............................. AGTCACACTTGATTTTAAAGACCTTATAGCCTTCAT 281850 30 100.0 35 TAGCCTTCAT .............................. ACCCCTCCTTCAGTCCTCAGCCATACAGGCTTCAT 281915 30 100.0 38 CAGGCTTCAT .............................. GTTATTGGAGGAACTGGGATTGATTAAAGACCCTAAAA 281983 30 100.0 38 GACCCTAAAA .............................. GTTATTGGAGGAACTGGGATTGATTAAAGACCCTAAAA 282051 30 100.0 37 GACCCTAAAA .............................. GTAGTATATGCCAATAGTAAAACTAAATATCAAATGT 282118 30 100.0 39 TATCAAATGT .............................. GTATATATCAGTGAAAAATGGCACTTTGGCAATTAAATC 282187 30 100.0 34 CAATTAAATC .............................. CTTGCTCTTTTACATCCACTGGAAGCTCAGAATA 282251 30 100.0 38 GCTCAGAATA .............................. TATGTTTAAAGTGGCGGGCTTGCTAATGGGGCTCGGAG 282319 30 100.0 37 GGGCTCGGAG .............................. TTCAATATTATATAATCTAATAATATTGCTGAGCTGT 282386 30 100.0 37 GCTGAGCTGT .............................. CAATGCTTGGTAGTGCAAGAGCGGGTGCTTCAACTTT 282453 30 100.0 34 CTTCAACTTT .............................. TTATCAATATTCTGGCTCCCAAACTTATCAAACT 282517 30 100.0 37 TTATCAAACT .............................. TAGAACCAATTGCAGGAGTAGGGGCAGCAATAGGTAT 282584 30 100.0 38 CAATAGGTAT .............................. TTACAGGTTGGAATAATGAAGGAAAGATAAGAATTTAC 282652 30 100.0 37 AAGAATTTAC .............................. CAATGGTTAAAAATAAGGTGAAATTATGAGGAAAGCC 282719 30 100.0 38 GAGGAAAGCC .............................. CGATAACCGAAAAGTTTATATAGTAGAAAGTAAATAAT 282787 30 100.0 38 AGTAAATAAT .............................. GACAACAAACAACATGAATACTCCTTTGATGACAACCG 282855 30 100.0 ATGACAACCG .............................. AGGGCAATAA ========== ====== ====== ====== ========== ============================== 22 30 37 CTTTCCATTCCGTTCCGGTCTGATTTTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.50,-2.50] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [215,396] Score: 0/0.18 # # Final direction: NA [0,0 Confidence: NA] >NC_013131 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 4461263 29 100.0 32 NNNNNNNNNN ....C.........ATGC........... GAGTTCACCGGGCCGGCCAGTACCACGTTGGC 4461324 29 100.0 32 NNNNNNNNNN ..........A...ATAC..AA....... TTGTTCACGGTGTTCAAACGGAGTCGGAGAAC 4461385 29 100.0 32 NNNNNNNNNN ......G.......ATAC........... CAGCGGGAACGACGCTGGGAACCACGGTCGCG 4461446 29 100.0 32 NNNNNNNNNN ..............ATAC........... GCGAGACCGAGTACAACTACAACGGCGGGGAC 4461507 29 100.0 32 NNNNNNNNNN ............................. GCGCCTACCTTACGATCACGCAGCCGACCGAG 4461568 29 100.0 33 NNNNNNNNNN ..........T.................. CTGCGGGTCGAGGTTCGAGCACATGATGCCGAT 4461630 29 100.0 32 NNNNNNNNNN ............................. GGGACCGCGACTTCCGGCGGGTACCCCTCGCC 4461691 29 100.0 44 NNNNNNNNNN ............................. TCGATCGGCGGCCTGAGCGGCGGAGGCCAGACCACCGCGCCCCA 4461764 29 100.0 32 NNNNNNNNNN ..............A.............. GGCAAAGGCACTGACCACCCCGAGCTCGTCAT 4461825 29 100.0 32 NNNNNNNNNN ......................A...... GCATTGCGTGCCTGGCAATTCTTTATCTCACG 4461886 29 100.0 32 NNNNNNNNNN A................C........... ACCTTGAACTTCGCCCCGGACATCAGGGTTTG 4461947 29 100.0 32 NNNNNNNNNN ............................. TCCCGGCCCTTGGTCTTGGCGCTGCGGTAGTC 4462008 29 100.0 32 NNNNNNNNNN ............................. CTGATCGCCGAGGCCTACGACGACGGATCGGG 4462069 29 100.0 32 NNNNNNNNNN ...........................G. TGGACTGCGTGTCGCATTCTCACTCGCGCCGC 4462130 29 100.0 32 NNNNNNNNNN ............................. TCGTCGTCCAGGACCAGCCGCGCGTCCGCCTC 4462191 29 100.0 32 NNNNNNNNNN A............................ TCGCCGTTCATCGTCGTCGGCAACACCATCAC 4462252 29 100.0 32 NNNNNNNNNN ............................. CTCAATACGGCTCATGCCGGGACCTCCGTCCA 4462313 29 100.0 32 NNNNNNNNNN ............................. GTGGTGTGATCAGAGGGCGGCGGCCGGGACCA 4462374 29 100.0 32 NNNNNNNNNN ............................. GGCGGTGCCCGCGCTCCGGATCGGTGCCCATC 4462435 29 100.0 32 NNNNNNNNNN ............................. GCACTCGCGGTCTACAAGCACACCGATCGACT 4462496 29 100.0 32 NNNNNNNNNN ............................. GACAAACGACACCGGCGGCGCCCACAGCCGCG 4462557 29 100.0 32 NNNNNNNNNN ............................. CGCGCCGCAGCGTCACGGGTGATCATAGAGGC 4462618 29 100.0 32 NNNNNNNNNN ............................. CAGCCCACATCGCCCGCCATGATCCCGCCCGC 4462679 29 100.0 32 NNNNNNNNNN ............................. CAGACGGGCGTGAGCATGTAGAACGCGCTGCC 4462740 29 100.0 32 NNNNNNNNNN ............................. CCCAGGTTGGTGATGAGACCGGCGCCGGGCCG 4462801 29 100.0 32 NNNNNNNNNN ............................. GGACCACTCGCGGCGGCGACCCGCTTACGGCC 4462862 29 100.0 32 NNNNNNNNNN ............................. ACGGAGGCTGATCCCATGACCCGCAAGCCCTG 4462923 29 100.0 32 NNNNNNNNNN ..........................T.. GCCCGGCAGGACTACCTGTCCGACCCGATCAC 4462984 29 100.0 32 NNNNNNNNNN ............................. ATAGCAACTCAGGGCACTGACACGGGAAGATC 4463045 29 100.0 32 NNNNNNNNNN ........................C.... CTGACCGACACGCAGCCAAGCCGACTGCCTGC 4463106 29 100.0 32 NNNNNNNNNN ............................. CTTCTGTGAACACCGCGGTGTCCTCCGATGTG 4463167 29 100.0 32 NNNNNNNNNN ............................. GAGCTGAAGGGCGAGTTTGACTCCCTGACCCA 4463228 29 100.0 32 NNNNNNNNNN ............................. GCAGACGTCGACGAGCGAACCTCCGAGCCCGA 4463289 29 100.0 32 NNNNNNNNNN ............................. TCGGGGACTCACCGGTAGACCTGGGGACCCTT 4463350 29 100.0 32 NNNNNNNNNN ............................. CCCGGGATCGACACCCGCGGGCCGGGCCGGAA 4463411 29 100.0 32 NNNNNNNNNN ............................. GTGACCTGGGGTCCCTTGTCGGCCGGCGACCC 4463472 29 100.0 32 NNNNNNNNNN ............................. CCCGACGTCCGCACGACCATCCGCAGCGTCTC 4463533 29 100.0 32 NNNNNNNNNN ............................. CGGCCGGAATCGTCACGGGAATCCCGGGTGAC 4463594 29 100.0 32 NNNNNNNNNN ............................. CGGTCTTCAGGACCGTACGTCTGAGCTGGCCT 4463655 29 100.0 32 NNNNNNNNNN ............................. CTGACACGGCGTGTCGCGCAGCTCGAGGCGAA 4463716 29 100.0 32 NNNNNNNNNN ............................. TCCGGCAACGCAAGGTCGCCGAAGGTGTCAGC 4463777 29 100.0 32 NNNNNNNNNN ............................. CATCCTGTCCTGCCTAGCGGGAACGCGGTTAC 4463838 29 100.0 32 NNNNNNNNNN ............................. TCTCACCAGCCCCCACGCGACACCCCCGAGTC 4463899 29 100.0 32 NNNNNNNNNN ............................. CGGCCCGGTCTGCGGTACGCGGCGGGGAACCC 4463960 29 100.0 32 NNNNNNNNNN ............................. CTGTTCATAGCTGACCTCTCGGACCGTTTCGC 4464021 29 100.0 32 NNNNNNNNNN ............................. ACCCGCCACGCTGACCACCGCCCGGGCCGGCT 4464082 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 47 29 32 GGGATCAGCCCCGCGCCTGCGGGGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [4,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-13.00,-12.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [28-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [48.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [656,828] Score: 0/0.18 # # Final direction: F [1.01,0.41 Confidence: MEDIUM] >NC_013156 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 347389 30 100.0 34 TAATTGGTCT .............................. ATGTGTTCTTCACCGATTGCAATCAACAAGTCTG 347453 30 100.0 36 AACAAGTCTG .............................. ATCAACTCCACAATTTTTTCAATGGTTATGGTGCTA 347519 30 100.0 37 TATGGTGCTA .............................. TTGTCATTTGCTATTTTATTAAGTGCAAGATAGTATG 347586 30 100.0 43 AGATAGTATG .............................. ATATAGAGTTTTGAGAAGTTTCATGTTGCTCACATTTTAATGG 347659 30 100.0 36 ATTTTAATGG .............................. CTCGCTCGCAAATCCTTAGATATTGCAAAAATCCCA 347725 30 100.0 36 AAAAATCCCA .............................. TATTGAACATTCAAAAATAAAAGACACTTCTAAAGA 347791 30 96.7 CTTCTAAAGA .............................T AATTGACTC ========== ====== ====== ====== ========== ============================== 7 30 37 GTTAAAATCAGACCGGAACGGTATGGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-3.70,-3.70] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [374,237] Score: 0/0.18 # # Final direction: F [0.41,0 Confidence: MEDIUM] >NC_013156 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 675352 30 100.0 37 AGTAATGTTT .............................. AATATGTTATTAAACAGCTAAGAAGTGAGTATGATAA 675419 30 100.0 35 AGTATGATAA .............................. CCACTATAAACAGCTGTAAGCTCTATACTATCATC 675484 30 100.0 40 TACTATCATC .............................. TTTGTTTAAGCTTCTCTTTCTTCTTTATAGCCTTTTCAGC 675554 30 100.0 40 CCTTTTCAGC .............................. TGGTTATAATACACACTCGCTCAGGTATGCGTTCATTACT 675624 30 100.0 33 GTTCATTACT .............................. TATTTGCTCTATGTGCTGTAATGTTGCCGATTC 675687 30 100.0 37 TTGCCGATTC .............................. TCTACATAAACTTTTGCAGTCAGAAATCTCGCTTCTG 675754 30 100.0 37 CTCGCTTCTG .............................. AAAAATCTCTCAGAGAAAATAAAAGACCTGCCGTTGC 675821 30 100.0 39 CTGCCGTTGC .............................. TTAAATTCCAGCCTCTTCTCCTTCTTCTTTAACTCCTCC 675890 30 100.0 37 TAACTCCTCC .............................. AATTATATACCAGATAATGAAACAAGAAAAGAGTATG 675957 30 100.0 38 AAAGAGTATG .............................. GGAAAAATAGCCAAGATAGATGTAGGAACAAGCAACTA 676025 30 100.0 41 CAAGCAACTA .............................. TTGGGATTATGGTCCTTACTATCTACCAAGACCCTTAGAGG 676096 30 100.0 36 CCCTTAGAGG .............................. TCATTAGCTGAAAAGCTGAAAGCACTTAAAAAGGCA 676162 30 100.0 33 TAAAAAGGCA .............................. ACCTTGCAGTCATCAAATTCAAATACGCCTTCA 676225 30 100.0 TACGCCTTCA .............................. AGGGCAATTA ========== ====== ====== ====== ========== ============================== 14 30 37 ATTTCCATACCGTTCCGGTCTGATTTTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-3.70,-3.70] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [253,479] Score: 0/0.18 # # Final direction: R [0,0.27 Confidence: MEDIUM] >NC_013156 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 717618 30 100.0 37 TAATTGTCCT .............................. TTTTAGAGGCGAAGCATACCTCTAAACAATTGACTTT 717685 30 100.0 38 AATTGACTTT .............................. CCAGTAACGTAAACTAATATCATGTGAATGAACATTAT 717753 30 100.0 37 TGAACATTAT .............................. TAAATGCAAATATAAAAAGTGATAATATGACAATGGA 717820 30 100.0 37 TGACAATGGA .............................. TTTTAGAGGCGAAGCATACCTCTAAACAATTGACTTT 717887 30 100.0 34 AATTGACTTT .............................. ACGAATCTCGCAAGCGGCTTCAACCCTAATAACA 717951 30 100.0 36 CCTAATAACA .............................. TTTGAATTGAATCCAAAGAAAAGATTAAAGGAATAT 718017 30 100.0 36 AAAGGAATAT .............................. AGCATTTTATCCCTCATTTGTTAGTATTTCTAATAC 718083 30 100.0 36 TTTCTAATAC .............................. AAAAGGGAGTTTTAAGCCAAATAATTTAGCAATAGA 718149 30 100.0 35 TAGCAATAGA .............................. CTGTATTTTTCAATTATCTCTACAATGTCAATATC 718214 30 100.0 35 TGTCAATATC .............................. TCATTTTTGAATTTCTCAGCATCTCTTTCTTGTAT 718279 30 100.0 38 TTTCTTGTAT .............................. TATATTAAGATTACTTTCTTTGCCATGCCTTACCACCA 718347 30 100.0 39 CTTACCACCA .............................. GATTTAATTGCCAAAGTGCCATTCTTTACGGACATCTAT 718416 30 100.0 36 GGACATCTAT .............................. TTTCATGCCATGATTTGGTTGCTTCATCATCTACAT 718482 30 93.3 TCATCTACAT .....................A.......C ATGAGGATT ========== ====== ====== ====== ========== ============================== 14 30 36 GTTAAAATCAGACCGGAACGGTATGGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-3.70,-3.70] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [468,158] Score: 0.18/0.18 # # Final direction: F [0.59,0 Confidence: HIGH] >NC_013158 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1415670 30 100.0 38 NNNNNNNNNN .T.C......A..A.A..GT.C.GCTG..A CACGATCACGGCGACGACCACGACCACAGTCACGCCGA 1415738 30 100.0 37 NNNNNNNNNN .T...........A................ CAGTCGAGCAGGCGCTCGGCCCGGTCCTGAATCTGGA 1415805 30 100.0 37 NNNNNNNNNN .............................. GAGTACAGTAACGACGTCTCAGGGTTGAATACTGTCC 1415872 30 100.0 34 NNNNNNNNNN .............................. GCCCCGACCCCTGGGGGAGCAATCACAATTGCCA 1415936 30 100.0 36 NNNNNNNNNN .............................. CCTTTTCGCCAACCGGACGCCGGCCCTGAAAATCGG 1416002 30 100.0 34 NNNNNNNNNN .............................. GCGACCATGCCGCCGAACATCACCGTCGACAGGA 1416066 30 100.0 36 NNNNNNNNNN .............................. GCGCTCGACGCGATCAAGAACGGCGCGACTGAGAGC 1416132 30 100.0 37 NNNNNNNNNN .............................. GAATACTCAAACGACGTTTCAGGGCTGAATACCATCC 1416199 30 100.0 36 NNNNNNNNNN .............................. TGTCGTCGGTCCGGGATCGACCCTCGATGACTGCAA 1416265 30 100.0 36 NNNNNNNNNN .............................. AATACTCAAACGACGTTTCAGGGCTGAATACCATCC 1416331 30 100.0 36 NNNNNNNNNN .............................. GGTGATGACGCTATTACTCATCTCCCTAAACGCGAT 1416397 30 100.0 37 NNNNNNNNNN .............................. TGGTCGCGCTGTCGGCCCCGTCGATCGCCGTGATCGT 1416464 30 100.0 35 NNNNNNNNNN .............................. TGGGCATGATCCAGGCTTTCGACTTCCACGTCCGG 1416529 30 100.0 36 NNNNNNNNNN .............................. CTGCCTCACGTTCGCTATCCACGAAACCCCAGTCCT 1416595 30 100.0 36 NNNNNNNNNN .............................. CTGCCTCACGTTCGCTATCCACGAAACCCCAGTCCT 1416661 30 100.0 35 NNNNNNNNNN .............................. CCGAAGCGGGCCTGGGTGATCGCCAGAGCAGCCAG 1416726 30 100.0 36 NNNNNNNNNN .............................. GATCGCATCACCTTCATCGGGGAGCGTGCCCCGCTC 1416792 30 100.0 35 NNNNNNNNNN .............................. CAGTCAGGTCGGTGTGGTGAACGTCGAACTCACCG 1416857 30 100.0 36 NNNNNNNNNN .............................. CCTGTTTTCACAGACGGAGTTCTGGGTTCGAATCCA 1416923 30 100.0 36 NNNNNNNNNN .............................. GCCGAGTTCTATGCTCGATGGCCCGCCGATTCAGCC 1416989 30 100.0 36 NNNNNNNNNN .............................. CGGCTCGGTGACTGTCTTGATGCCGAGATCCTCGTC 1417055 30 100.0 35 NNNNNNNNNN .............................. TCGGTCTCGACGCCGACGAGTACCGCGAGCAACTC 1417120 30 100.0 36 NNNNNNNNNN .............................. CGGAATCGGCTCTGGCACCGTCGAGAAGCTCCGCGA 1417186 30 100.0 33 NNNNNNNNNN .............................. CCGACGTCGGCTTTGCCGAAGCCCTCTCCGCTG 1417249 30 100.0 35 NNNNNNNNNN .............................. CCGGGTGGAGGTCCTTGCCGGTGTGCCCGACGACC 1417314 30 100.0 34 NNNNNNNNNN .............................. CCAGCATGGAGGCCGGCCCGTCGAACTACCCGAC 1417378 30 100.0 35 NNNNNNNNNN .............................. CAGCCAGTCACGTCGCGCTTACAGGTATCGCAATA 1417443 30 100.0 37 NNNNNNNNNN .............................. TGGAACGTCAACGTCTTCGGTCCAGGTCACAGAGTCG 1417510 30 100.0 37 NNNNNNNNNN .............................. CGGGCAAGAAGACTCGGTAGCCGTCGCCCTCGGCCTC 1417577 30 100.0 36 NNNNNNNNNN .............................. TAGTCCGCAAGTTCCAGCATTCGCGAGTCGAGCATC 1417643 30 100.0 35 NNNNNNNNNN .............................. GATTCGGATGTCTTTATGCCCTCGATCAAAACCAA 1417708 30 100.0 37 NNNNNNNNNN .............................. TCGACGAGCTCGAGGAGAAGGTCGACCAGGTCCGCGA 1417775 30 100.0 36 NNNNNNNNNN .............................. GGCTCGACGACGCATGACGCACGCACTGATCGCCGC 1417841 30 100.0 35 NNNNNNNNNN .............................. GAGACGACTTGCGGACCGTCGTCGGTCGGTGCCTC 1417906 30 100.0 35 NNNNNNNNNN .............................. ATACCGGGATCGGGATCGACCCAGATCCGCCGCTT 1417971 30 100.0 37 NNNNNNNNNN .............................. CCGTCGACGCGATCGTCGCCCAGACCGAACCGATCGA 1418038 30 100.0 36 NNNNNNNNNN .............................. AAATCCCACACGATGCCATGGTTGTGATTGTCTTGG 1418104 30 100.0 35 NNNNNNNNNN .............................. GACCTCCACGCCGAGGAGGGGCCGATCCCCGTGAG 1418169 30 100.0 35 NNNNNNNNNN .............................. ATCGCCAGGTCGAGCTGGTCCTGCTGCAGCTCCCA 1418234 30 100.0 35 NNNNNNNNNN .............................. ATGCACTCGCCACCGTCGACGATCCCGGACGTCGC 1418299 30 100.0 37 NNNNNNNNNN .............................. CGACGACGGCGCATATGACGAGTTCGCCCGAATCCTC 1418366 30 100.0 37 NNNNNNNNNN .............................. TGCTGGAGATCCTCGCCCCTGGCGACGTCGAGACGCA 1418433 30 100.0 36 NNNNNNNNNN .............................. GCCCGAGGACGTCTACCGCGAGCACATCCTCGCGAC 1418499 30 100.0 37 NNNNNNNNNN .............................. CATCGCCCGCCTTCTGGTCGACCGCGCGGAGAATCTC 1418566 30 100.0 34 NNNNNNNNNN .............................. CCGCGACCGCCCCGATCGCCGTCGACGACCCGAC 1418630 30 100.0 35 NNNNNNNNNN .............................. GGCCGGCGTCTGGGCGAGCGTGTCCTGGAGTGCAG 1418695 30 100.0 37 NNNNNNNNNN .............................. TCCGACGCACGGGACCTGTACGTGGTCGGAACTCCTG 1418762 30 100.0 36 NNNNNNNNNN .............................. TTAGAAATCACCCCCGAGATTCATGACAGTCTGCTT 1418828 30 100.0 35 NNNNNNNNNN .............................. GATGTCGGAGATGTTCGAGAGGGTCCGGCTCATTA 1418893 30 100.0 36 NNNNNNNNNN .............................. CCGCAGTGAACGCACTCCGACATCGTTAGGCCTCCA 1418959 30 100.0 35 NNNNNNNNNN .............................. CCACTGAAATCAAAGTCCGACTCCTCTCCGGATCG 1419024 30 100.0 36 NNNNNNNNNN .............................. CGCGATATATAATATATATGCTCGCGTCCTGAACGT 1419090 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 53 30 35 GCTTCAACCCCACGAGGGTCCGTCTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [7,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTTTCAGACGAACCCTTGTGGGTTTGAAGC with 90% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-4.60,-6.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [40.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [137,104] Score: 0/0.18 # # Final direction: R [0.37,1.55 Confidence: MEDIUM] >NC_013156 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 760023 30 100.0 37 TAATTGTCCT .............................. CTAACATAATAGAGTGGCTACGGCTTGGGTTTTGCCG 760090 30 100.0 34 GGTTTTGCCG .............................. CAAATCTTCTACATTTGCTTCTTCTTTTATTCTT 760154 30 100.0 37 TTTTATTCTT .............................. CACAAATTCCTCATAGCTTAGAGTTCCGTCTTTAATT 760221 30 100.0 37 GTCTTTAATT .............................. CACAAATTCCTCATAGCTTAGAGTTCCGTCTTTAATT 760288 30 100.0 36 GTCTTTAATT .............................. CATGACGGCTGTTTTTAGAAGCAACGACGCTTTATG 760354 30 100.0 34 ACGCTTTATG .............................. GTGATGGACCAAGCAGTTAACGACACAAACCCGT 760418 30 100.0 37 ACAAACCCGT .............................. AAAGAAGTAATAAAGACTGCTGGATTCTCAATAATTG 760485 30 100.0 TCAATAATTG .............................. CAAATACGAGTT ========== ====== ====== ====== ========== ============================== 8 30 36 GTTAAAATAAGACCGTCTCGGTATCTAATA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.80,-2.80] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [580,252] Score: 0.18/0.18 # # Final direction: F [0.45,0 Confidence: MEDIUM] >NC_013159 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1426965 28 100.0 33 GTCACGAAGT ............................ CTCATCACCGACCACTAGGAGTTCCAGTCATGC 1427026 28 100.0 33 CCAGTCATGC ............................ GTACTCGGTGAGCGCGTGCTCGATCACCAGCTG 1427087 28 100.0 33 TCACCAGCTG ............................ GGTCGGGATGAAACGCCACCCAGGCTGGGGTGT 1427148 28 100.0 33 GCTGGGGTGT ............................ TACGGATGTGCTCGATGACGGGCGTGCCACTGG 1427209 28 100.0 33 GTGCCACTGG ............................ CTGGACGGCGTCGCCCGCGTCGGGACGCCTCGG 1427270 28 96.4 33 GACGCCTCGG .............A.............. GGTGCTCACCTCCCCAGGTTGTCATCCACCTGA 1427331 28 96.4 ATCCACCTGA .............A.............. GTGGAACGGTTCGACCAGGGGCAACGGCAACTCGTCCGC ========== ====== ====== ====== ========== ============================ 7 28 33 GTCCGCCCCGCGCGTGCGGGGATGAACC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [3,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [991,983] Score: 0/0.18 # # Final direction: F [0.27,0 Confidence: MEDIUM] >NC_013159 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1434700 29 100.0 32 GTCAACAAGT ............................. AACTTCAAGGCGGTGTCACCGGCGGAGATCAT 1434761 29 96.6 32 CGGAGATCAT ............................C TTCCCGGCGGTGTAGGACTTGCCCGTCCCTGC 1434822 29 100.0 32 CCGTCCCTGC ............................. TTGTGCGAGACGTCTAATTCGGAGAGTCCCGG 1434883 29 100.0 AGAGTCCCGG ............................. ACAGTCGTGCTGCACACCCGCCACATCAAAAA ========== ====== ====== ====== ========== ============================= 4 29 32 GTCCGCCCCGCGCATGCGGGGATGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [4,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [81,77] Score: 0/0.18 # # Final direction: F [0.64,0.41 Confidence: LOW] >NC_013159 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1435658 28 100.0 33 GTCAGGAAGT ............................ GCCCATCAGCATCGACTGGGGCGAGCCGTTCAC 1435719 28 100.0 33 AGCCGTTCAC ............................ GACCCTGCCGGGGGTTCCGCTGGACGACTACGC 1435780 28 100.0 33 ACGACTACGC ............................ GTATTGTTGGGGTTGTCACGGAGCCCAACACAG 1435841 28 100.0 33 CCCAACACAG ............................ CCTGGAAGGGACGGTGGTGGGGTGCCGCCGTCT 1435902 28 100.0 33 GCCGCCGTCT ............................ GTCACCGCCGTGGGCGGCTGCGCTCGGCCGATC 1435963 28 100.0 33 TCGGCCGATC ............................ GTCGCTGATCTTGAGGGTGCCGCGCAGAATGTC 1436024 28 100.0 33 GCAGAATGTC ............................ GCGGATCAAGCGGCTGGAGTCGCGGCTGGTGCT 1436085 28 100.0 GGCTGGTGCT ............................ TGGGGAGCAG ========== ====== ====== ====== ========== ============================ 8 28 33 GTCTGCCCCGCGCATGCGGGGATGAACC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [4,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [50.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [79,748] Score: 0.18/0.18 # # Final direction: F [0.27,0.18 Confidence: LOW] >NC_013159 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1762949 29 100.0 32 TGCTCGCGGG ............................. TGAAGCTGTCTACGGGCGGCTTTTAAGGCCAC 1763010 29 100.0 33 TTAAGGCCAC ............................. GATGGGCTACAGGTGTTTGGCGCGGTAGACGCC 1763072 29 100.0 32 GGTAGACGCC ............................. GACTCGCTAACGCCTGAGGAACAAGACGAGAT 1763133 29 100.0 32 AAGACGAGAT ............................. CCCGGGCGGCCCCGAGCATGTCGAGCGCCATT 1763194 29 100.0 32 GAGCGCCATT ............................. CCCGGGCGGCCCCGAGCATGTCGAGCGCCATT 1763255 29 100.0 32 GAGCGCCATT ............................. GCGGCCACCGGTATCGCGGCGTCGGCGGCGTC 1763316 29 100.0 32 CGGCGGCGTC ............................. TACCTGGAGATTGCCGCAGGCCGCCGCGCCCC 1763377 29 100.0 32 GCCGCGCCCC ............................. TCGTTCCCGGCGCCCCATCCGAGTGACTCGGT 1763438 29 100.0 33 GTGACTCGGT ............................. GTCGAGCGCTGGGCCCGCGCGGCGCGGTCCGGG 1763500 29 100.0 32 GCGGTCCGGG ............................. ACTGGTGGTGGATTTCACCGCTAGTCAACGCT 1763561 29 100.0 32 AGTCAACGCT ............................. TCGGCAGGCGCTGCCAACCCCCGGCAGCGTGT 1763622 29 100.0 32 GGCAGCGTGT ............................. TTCGGCTGCTTCGGCAACCTTCCGCTCCTGTT 1763683 29 100.0 32 CGCTCCTGTT ............................. GACGGCGCGGTCGCCCGAGAACTCCGTAAATC 1763744 29 100.0 32 TCCGTAAATC ............................. GCCGTGAGGAGAGACCACCCTGGCGAGCTGTT 1763805 29 100.0 32 GCGAGCTGTT ............................. GCCTCGTCCCGCTCGGCGCGTTGCTGCCGCTG 1763866 29 100.0 32 GCTGCCGCTG ............................. AGCAGGGGTTGGCCGGACGGGGCGCGGGCTTG 1763927 29 100.0 32 CGCGGGCTTG ............................. ACACGCTCCGCATACACCATCAGGACACCGGC 1763988 29 100.0 32 GGACACCGGC ............................. CAAAAAGACCCCCCGACCAGCTCTCGGGGGGT 1764049 29 100.0 32 CTCGGGGGGT ............................. GCAGGCACGACCGCTACGTACGGCCGGTTGTA 1764110 29 100.0 32 GCCGGTTGTA ............................. CGCTCGGCATCCTGGCCGTCCCGGTCGTGGTT 1764171 29 100.0 32 GGTCGTGGTT ............................. GGATTTCCGGCCCTCAGATCGCCTCTGGCAGC 1764232 29 100.0 32 CTCTGGCAGC ............................. CCGAAACGGTGGCCGTGGATGTCGTTGAGTGC 1764293 29 100.0 32 CGTTGAGTGC ............................. TCGGGGCTCGCCAGCGTCTGCCGCCCCACTGT 1764354 29 100.0 32 GCCCCACTGT ............................. GTTTCGAGGGCGACACCATCTCGGGTGCGCCA 1764415 29 100.0 32 GGGTGCGCCA ............................. ACCGCCCCCACTCTGGAGGCTGTCGGCGAGTA 1764476 29 100.0 32 TCGGCGAGTA ............................. GTCACACGTACAGCGGGCCCCGGCGTGCCGCC 1764537 29 100.0 32 GCGTGCCGCC ............................. GCCACGAGCACGACCATCGGCAGCCGCCCAGA 1764598 29 100.0 GCCGCCCAGA ............................. CCTTCGTGAC ========== ====== ====== ====== ========== ============================= 28 29 32 CGGACCACCTCCACGTGCGTGGAGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-8.80,-9.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [655,171] Score: 0.18/0.18 # # Final direction: F [0.55,0.27 Confidence: MEDIUM] >NC_013159 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1774013 29 100.0 32 NNNNNNNNNN ............................A GAGGGGGCGGGAAGAACCTCTTCCGAGCCCTC 1774074 29 100.0 32 NNNNNNNNNN ............................. GCCCTGACGGCGCGCCGATACTGGCCCGCGAA 1774135 29 100.0 32 NNNNNNNNNN ............................. AACGGCCAGTACCAGGCCTCCGACCCCTCGCC 1774196 29 100.0 33 NNNNNNNNNN ............................A GTAGGTGGTAGCCGTGTTGTTTGAGGTAGTGGG 1774258 29 100.0 32 NNNNNNNNNN ............................T GTTTCGTTCGGGGTCAGCGTTGCCCTGCTGCC 1774319 29 100.0 32 NNNNNNNNNN ............................. TCGATGTGTGGGCGCCGAGTGAACGTGGGGTC 1774380 29 100.0 32 NNNNNNNNNN ............................. ACCTGGTCAGGCGCACGTTGGCCGAGACGCAG 1774441 29 100.0 32 NNNNNNNNNN ............................. GGCCAGCCCTGCCACGCCGACGAGTGGCTGGC 1774502 29 100.0 32 NNNNNNNNNN ............................. GAAGAGCGCCCACGGCGGAGCCCACAGCGGAA 1774563 29 100.0 32 NNNNNNNNNN ............................. CATTTTTCGTAGCGCATTCCCGATCGACTGCC 1774624 29 100.0 32 NNNNNNNNNN ............................. CGCGGTCGGATCACGGTGCCTTCCAGTCGCAC 1774685 29 100.0 32 NNNNNNNNNN ............................. AGCTGTTCGCGGCGGTCCTAACCTTCGCCGCC 1774746 29 100.0 33 NNNNNNNNNN ............................. CCCATTCCGTACTGTTGGACCAGGCGCCGCTGC 1774808 29 100.0 32 NNNNNNNNNN ............................. GCCACGACCTCAGCCGTGGCTTACCTGCGCGG 1774869 29 100.0 32 NNNNNNNNNN ............................. ATCGCAGCCGAGGGCGTGGACCGAGGTGACCG 1774930 29 100.0 32 NNNNNNNNNN ............................. GACGGCAAGATCGTGGAGCTCAACGACGTGGG 1774991 29 100.0 32 NNNNNNNNNN ............................. GCAGGCGCGGCTGGGAGGGACGGCTGGCGTGC 1775052 29 100.0 32 NNNNNNNNNN ............................. CCTCGCGGGCCAGCTGCTCGGCGCGCTCCACC 1775113 29 100.0 32 NNNNNNNNNN ............................. TCACAGACTCCGGCAGTCACTGACTCTGTCGA 1775174 29 100.0 32 NNNNNNNNNN ............................. TGACCAGTGGTCTACCTACCAGCGGTGGCGCC 1775235 29 100.0 32 NNNNNNNNNN ............................. GCGACTGATCTGCTGCGCCGCGTGTACTCCGC 1775296 29 100.0 32 NNNNNNNNNN ............................. AGGATCGTTTGATGCGCGGGCTGATCGTGTAC 1775357 29 100.0 32 NNNNNNNNNN ............................. ACGTCCACGTCGGCACTGCCCGAATGCGCCAC 1775418 29 100.0 32 NNNNNNNNNN ............................. GGGTGGGTTGAGATCAACGCGTGACGCGTGAC 1775479 29 100.0 32 NNNNNNNNNN ............................. GATGACGTCGCCGTTGTCGTCTACGAGGACAG 1775540 29 100.0 32 NNNNNNNNNN ............................. CTGGAGCACATCCGACAGGGGACCCACAGCGA 1775601 29 100.0 32 NNNNNNNNNN ............................. CCGAATCCCGCGATCTCTGACCCTGCCAACGC 1775662 29 100.0 32 NNNNNNNNNN ............................. GCCCTGTCCAGGGTGAAATGTACGCGTCGCGC 1775723 29 100.0 32 NNNNNNNNNN ............................. GTCCGCTACGCCTGTGAGCACGTGCCGGAGCC 1775784 29 100.0 32 NNNNNNNNNN ............................. CGGCGTAGCCGCTGGTCAGAGCTGCACAAAAG 1775845 29 100.0 32 NNNNNNNNNN ............................. GAGGCCGCGAAATGGCGGGGCACCCTGGAAAG 1775906 29 100.0 1 NNNNNNNNNN ...........................T. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 32 29 32 GTGCTCTCCACGCACGTGGAGGTGGTCCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-9.00,-8.80] Score: 0/0.37 # Array degeneracy analysis suggestion: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [40.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [20,455] Score: 0.18/0.18 # # Final direction: R [0.27,0.96 Confidence: MEDIUM] >NC_013159 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1786313 28 96.4 33 AAGGAGAGGG ....................A....... TTCGGGAATGCCGCGTCGATCTGCTCGCGCAAC 1786374 28 100.0 33 CTCGCGCAAC ............................ ACCAGGGCGTCGAGGAACTCGGCCGTCTCCTCG 1786435 28 100.0 33 CGTCTCCTCG ............................ CGCGCCCGAAAGAGAAAAGCCCCGCCCGAGAGG 1786496 28 100.0 33 GCCCGAGAGG ............................ GTACCACCGCCAGATCAAACCCTGACATCCAGG 1786557 28 100.0 33 GACATCCAGG ............................ CTTGTCGTCGCTGGACTCGCGTTCGCGCTGAGC 1786618 28 100.0 CGCGCTGAGC ............................ ACTTGTTGAG ========== ====== ====== ====== ========== ============================ 6 28 33 GGACCATCCCCGCGTGCGCGGGGCCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [3,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [30.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [554,110] Score: 0.18/0.18 # # Final direction: R [0.55,0.68 Confidence: LOW] >NC_013159 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1796255 28 100.0 33 GTCAACAAGT ............................ GCGGTCGCGGTGTGCGCTGCCTCGGGTGTCGGG 1796316 28 100.0 33 GGGTGTCGGG ............................ GGCGGCGTGCAGCTCGTCCCGCTCATCGGCGGT 1796377 28 100.0 33 CATCGGCGGT ............................ CTTGCCAACGTTGTATAACGTGGTGGCATGTCC 1796438 28 100.0 33 TGGCATGTCC ............................ GGCAATGGCTTGTTTGAGCATCTTCTTGGCTTC 1796499 28 100.0 33 TCTTGGCTTC ............................ CGGTACGCGGTACCGGCGACAGAGTGTCTCCAC 1796560 28 100.0 33 GTGTCTCCAC ............................ GTAGCCCCTCCCGAAGGTCACGTTTCCGCAGGT 1796621 28 100.0 33 TTCCGCAGGT ............................ GTTACCGATGAATCGGTGCTGGTAGAGCGGCAT 1796682 28 100.0 33 AGAGCGGCAT ............................ CGACGTCACCCGGCGCGGCTACCGGGTCGGGTG 1796743 28 100.0 GGGTCGGGTG ............................ TCCATCCAAGGCGCGGACGTTGCCGCGCCGGTG ========== ====== ====== ====== ========== ============================ 9 28 33 GTCGGCCCCGCGCACGCGGGGATGGTCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [48.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [188,995] Score: 0.18/0.18 # # Final direction: R [0.27,0.55 Confidence: MEDIUM] >NC_013159 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 2195669 25 100.0 36 GTCAGCAAGT ......................... ACCGGGATGCGACCCATGTTCGACGTTACCGCAGGT 2195730 25 100.0 36 TACCGCAGGT ......................... ACCCGCCCACCACGCCAGCAGCCACACCAGTGCCGG 2195791 25 100.0 36 CCAGTGCCGG ......................... ACCTCGTCTGTGCGGAGTTGCCACCCGGCCGGGGCT 2195852 25 100.0 36 GGCCGGGGCT ......................... ACCACCAGGCCGAGTCCGGCGATTGCCCGGCGGCTA 2195913 25 96.0 36 CCGGCGGCTA ...........G............. CCCGGGGTGAGGGGCCGAAGATGGCAGCGAAACCGC 2195974 25 96.0 36 GCGAAACCGC ...........G............. CCCGGGGTGAGGGGCCGAAGATGGCAGCGAAACCGC 2196035 25 96.0 36 GCGAAACCGC ...........G............. CCCGTAGACCACGGTGTAGACGTCGCGACCGGTGGC 2196096 25 96.0 36 GACCGGTGGC ...........G............. CCCCATCAGCACCGAGTGGCCCCGCTTGACCAGGTC 2196157 25 100.0 36 TGACCAGGTC ......................... CCCCGGTCGTCGTCCTCAGCGGCCAGAATGGCCTGT 2196218 25 100.0 36 AATGGCCTGT ......................... ACCGCTGATGGGGGCACCCTGGGCGCGGGCGATGGT 2196279 25 100.0 35 GGGCGATGGT ......................... ACCGTGCGCAGTTTTGACTCGGGGCTGGGGTTCGC 2196339 25 100.0 36 TGGGGTTCGC ......................... ACCCAACCCCGTCGACAACCCCACGCTCGGCGCCGA 2196400 25 100.0 36 TCGGCGCCGA ......................... ACCGCCTGAGTTCGAGTTCGAGTTCGAGGACGAAAC 2196461 25 100.0 36 AGGACGAAAC ......................... ACCCACGCTGCTCGCGGCGGCGTCGCTCATCGACGA 2196522 25 100.0 TCATCGACGA ......................... ACCCTGCTCGTAC ========== ====== ====== ====== ========== ========================= 15 25 35 GTCGGCCCCGCACACGCGGGGATAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [4,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-9.10,-9.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [46.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [320,207] Score: 0/0.18 # # Final direction: F [0.64,0 Confidence: HIGH] >NC_013159 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 2199041 25 100.0 36 GTCAACAAGT ......................... ACCCAGGGCGTCCGGTTTTGGCCATGGTGGAACCTC 2199102 25 100.0 36 GTGGAACCTC ......................... ACCCCGCGAGTTTCTGACCGTGGCAGGACCGACCGC 2199163 25 100.0 36 GACCGACCGC ......................... ACCTGAGGGCGACCCCCCGCCAAGCTGTATAACGAA 2199224 25 100.0 36 GTATAACGAA ......................... ACCGTGGGCACGCATGGAGCATGTGACGATCCGGGC 2199285 25 100.0 36 CGATCCGGGC ......................... ACCCTTCCTGCTTGGCGCGCTCCCACCACTTCGCCA 2199346 25 96.0 35 CACTTCGCCA .......................A. TCCCCCCTCCTCCTTTCGGATGATCGAAATGACGT 2199406 25 92.0 36 GAAATGACGT .C.....................A. TCCCTGTCCACCGATGACGGTAATGCGCTCGTGCAG 2199467 25 100.0 GCTCGTGCAG ......................... TTTCTGGGT ========== ====== ====== ====== ========== ========================= 8 25 35 GTCGGCCCCGCGCACGCGGGGATGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [2,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-9.10,-9.30] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [45.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [162,1176] Score: 0.18/0.18 # # Final direction: F [0.68,0.18 Confidence: MEDIUM] >NC_013160 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 45215 37 100.0 37 NNNNNNNNNN TAAA.TCCAG........................... TTCTTAATCATTTTACGGGTTCTATTGCTAATGCTAG 45289 37 100.0 40 NNNNNNNNNN ..................................... CATGGCGTTTTCGAGGAGTGTTGCTGCGATCGCGTTTTTC 45366 37 100.0 33 NNNNNNNNNN ..................................... GCTAAAATTTCTTGCTCTTTTTTCTCCTCAGAG 45436 37 100.0 36 NNNNNNNNNN ..................................... CCCTAAGCAACCCGCTAACCCTCAAGTGGTTTTCCG 45509 37 100.0 35 NNNNNNNNNN ..................................... ATCGACTCATCCCTTTTTTTTCTAAAACTTTTTTT 45581 37 100.0 38 NNNNNNNNNN ..................................... AATGATTGTATAAACGATAGAATTTCCCTGAATTTCTT 45656 37 100.0 34 NNNNNNNNNN ..................................... TCGTATAGCTTGATTTCCCAAGGAATCGTTAAAT 45727 37 100.0 1 NNNNNNNNNN ..................................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 8 37 36 GTTTCAATCCCTCATAGGGATTAACAATAATTGGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.30,-7.30] Score: 0/0.37 # Array degeneracy analysis suggestion: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2142,236] Score: 0.18/0.18 # # Final direction: R [0.45,4.91 Confidence: HIGH] >NC_013161 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2228753 37 100.0 36 AGCTGACGGA ..................................... GCGGATCGACAATAATTTACGCGCCAACATCATTGG 2228826 37 100.0 34 ACATCATTGG ..................................... ATGTTTGTGGTTCCTGATACAGAAATTCGAGGGG 2228897 37 100.0 36 ATTCGAGGGG ..................................... TTCCTTTGATCCTTTCGTTCGTCCTAAATATTTTAA 2228970 37 100.0 35 AATATTTTAA ..................................... ATTTCTGTAGCTTTAATAAAGCCTAAACCTGGGAA 2229042 37 100.0 35 AACCTGGGAA ..................................... AAAAAGATAAAACAAACATCCTTATTAGCTGCCAT 2229114 37 100.0 TAGCTGCCAT ..................................... CTATAAATTGATTTAGGTCAATTTTCACGGGAATTA ========== ====== ====== ====== ========== ===================================== 6 37 35 GTTTCAACGACCATTCCCAACAGGGATGGGTTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:51.35%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-11.80,-9.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [522,376] Score: 0/0.18 # # Final direction: F [0.37,0 Confidence: MEDIUM] >NC_013161 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2288506 37 100.0 38 GTTTTTGCCC ..................................... AGTCATTTTCATTGAGTCACGCAATTACGCCCGCCAAA 2288581 37 100.0 35 GCCCGCCAAA ..................................... GTTTTCTAATAGTAACCCCGATTTTTTCATGGCAT 2288653 37 100.0 34 TTCATGGCAT ..................................... TTTTAAAGGCAAATTTAAAGGGTCTGAGAGTATA 2288724 37 100.0 40 TGAGAGTATA ..................................... TTTCTTCTATTTCAATATTTTGGGGAGGAAGGTTATTAAT 2288801 37 100.0 39 GGTTATTAAT ..................................... CCAATATATTAATTTTAGGACAATCTTGAACAGGAGAAT 2288877 37 100.0 35 ACAGGAGAAT ..................................... CGCTTAACTTCTCCCTTTCCCTCCCCAAAAAGAGA 2288949 37 100.0 36 CAAAAAGAGA ..................................... GCCGAACGATCTGCTTTGAGGTCACGGGGTTTCAAT 2289022 37 100.0 GGGTTTCAAT ..................................... CCCTAACAGCT ========== ====== ====== ====== ========== ===================================== 8 37 36 CTTTCAACCTACCCCTTATCGGGATGGCGGTTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [8,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.70,-10.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [63.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [452,540] Score: 0/0.18 # # Final direction: R [0.27,0.74 Confidence: MEDIUM] >NC_013161 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3192429 37 100.0 39 AAAATCCTAG ..................................... TTTAGAAAATGTTAGTAATGGCGATCGCCCTTTAGATGT 3192505 37 100.0 38 CTTTAGATGT ..................................... TTTTATAATGAATTAAAGGAATGCCTTGCTTTTTAGAA 3192580 37 100.0 43 CTTTTTAGAA ..................................... CTTTCGCTTCTCAAAAGCATCTTTTTCCCGTTTTTCTTGAATT 3192660 37 100.0 39 TTCTTGAATT ..................................... AACTCGCTTAACTTCTCCCTTTCCCTCCCCAAAAAGAGA 3192736 37 100.0 34 CAAAAAGAGA ..................................... CTTGATCGTTCCTCGCTCCTGGTGTAAAAGTTTG 3192807 37 100.0 TAAAAGTTTG ..................................... TCCGTCAGC ========== ====== ====== ====== ========== ===================================== 6 37 38 CTTTCAACCCATCCCTGTTGGGAATGGTCGTTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:51.35%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-9.40,-11.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [500,522] Score: 0/0.18 # # Final direction: R [0,0.64 Confidence: HIGH] >NC_013161 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 4298967 37 100.0 34 TACTTGTTCT ..................................... TTATTTCGCCCTTGAGATTAATAGTAATCGGCTT 4299038 37 100.0 32 TAATCGGCTT ..................................... TCAATATAAGGCTGAGGAGAGGCAACAGTTAG 4299107 37 100.0 37 CAACAGTTAG ..................................... AATAAAAAATCGTCGTATAAAGGGTAGTAGAGCCTTC 4299181 37 100.0 35 TAGAGCCTTC ..................................... ACATCACCACAGAGGAAAAAACAATGGCCACTGAA 4299253 37 100.0 34 GGCCACTGAA ..................................... ACTGTTTCTCCTGCGCTAAATTCTGGAATCATAA 4299324 37 100.0 36 GGAATCATAA ..................................... TAGGGAGTCGCTCTTGAGAGTTCAACGCCTGAAGAA 4299397 37 100.0 38 GCCTGAAGAA ..................................... CTTCAACACCGCGACTTAATTGAGATAAAGCAATGTTT 4299472 37 100.0 35 AGCAATGTTT ..................................... CAAGAATTAGATCTTGACTGAACTTCAACTCAAAA 4299544 37 100.0 35 CAACTCAAAA ..................................... GCCGCTTTAGTAGGGTTCTCGCGTGTAAATTTTTT 4299616 37 100.0 37 TAAATTTTTT ..................................... CAGTATTAGCGATCGCTTTTAATGCGGTGATATCCGC 4299690 37 100.0 37 TGATATCCGC ..................................... TTGTTTAAGCGTTCCCAAGGGGTTAAATCAACCTCAT 4299764 37 100.0 TCAACCTCAT ..................................... TGCGATCGCG ========== ====== ====== ====== ========== ===================================== 12 37 35 GTTTCAATCCCATTGCTAGGATTCATTAATAAGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.40,-6.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [125,443] Score: 0.18/0.18 # # Final direction: R [0.27,5.05 Confidence: HIGH] >NC_013161 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 512560 37 100.0 36 TCCTTCAGGA ..................................... TTCCAAAATACAAAAAACTATTGGGGCAGATGTTGA 512633 37 100.0 35 CAGATGTTGA ..................................... TTATCTGATGCTTTTCTCAAGCTGTCGCCTGTTTT 512705 37 100.0 37 CGCCTGTTTT ..................................... TCCTTATTCTTGTCTTTCTGATTTTCAAAAAGTTGTT 512779 37 100.0 35 AAAAGTTGTT ..................................... CTCTTACCGATGGAGGCTTTGCCTATTACTTAGCC 512851 37 100.0 35 TTACTTAGCC ..................................... ATCTGTAAGAATCATAATTTAGAATTTGATATAAT 512923 37 100.0 39 TTGATATAAT ..................................... TCAGGCTTTTTATCTTTGTCTTTGGTAATCAGTTCCTCA 512999 37 100.0 39 CAGTTCCTCA ..................................... AACTAATAAATTAACCTAAGATTATGACTGAAGTTGCTC 513075 37 100.0 35 GAAGTTGCTC ..................................... TGTACACCTATCTGTTTTGATATTTTCCATTTTAG 513147 37 100.0 39 TCCATTTTAG ..................................... AACGGAATAATCGCTAATATCGATCCCTAAGTCCTTGGC 513223 37 100.0 35 AGTCCTTGGC ..................................... TTAGGGATTGCGATTTTTTCCGAGGGATCTAAGCA 513295 37 100.0 36 GATCTAAGCA ..................................... CTAACAGGACAAACCGATCCCCCCCGCCGGAGGAAT 513368 37 100.0 35 CCGGAGGAAT ..................................... TTGATCTAATTTATTGTAATAACGTTCAACTAAAT 513440 37 100.0 38 TCAACTAAAT ..................................... GCCGAAAACTAGCGAGCACTTCCCCCCATTTTTGCGCT 513515 37 100.0 35 TTTTTGCGCT ..................................... TGGGATGGTATTGAAGGTAAAGAGCTTTTAGGTTC 513587 37 100.0 TTTTAGGTTC ..................................... TGCGATCGCCC ========== ====== ====== ====== ========== ===================================== 15 37 36 GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.27%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.40,-6.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [145,195] Score: 0/0.18 # # Final direction: R [0.27,4.87 Confidence: HIGH] >NC_013161 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 910346 37 100.0 34 AGCGATCGCA ..................................... GCGGCCGCGGAGTGTGGCTAACCTGGCTTGGCTA 910417 37 100.0 34 GGCTTGGCTA ..................................... GTTTATCAGGTTGGTAATATTGGACCGACCTCAA 910488 37 100.0 35 CCGACCTCAA ..................................... GATAAAACTTCCTCGCCACGGGAAACCACCGCCAG 910560 37 100.0 31 CCACCGCCAG ..................................... TCATCAATTCCGTTGCTATTTTTGTCTTTAT 910628 37 100.0 33 TTGTCTTTAT ..................................... ATTTTGGGCTGCACGCAGATCGAGGCAATAACG 910698 37 100.0 34 GGCAATAACG ..................................... TAGTCAGGATTTGATCCTTGATCTCTACCAGAAA 910769 37 100.0 42 CTACCAGAAA ..................................... CCAACAATTTGAAATGAAACGGATGGCTGATGCAGCCGATAA 910848 37 100.0 CAGCCGATAA ..................................... AGAAATATAAACGCACTAAAGATATTAAGGATTATTAT ========== ====== ====== ====== ========== ===================================== 8 37 34 GTTTCTTATTAATGAATCCTAGTAATGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.27%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.70,-3.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [53.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [248,288] Score: 0/0.18 # # Final direction: F [4.87,0.27 Confidence: HIGH] >NC_013162 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================================== ====== 709244 46 97.8 30 GGCTTTCTCC .................................T............ TCTTTTGCGACGTATTCATATTGAGGACGG 709320 46 100.0 30 TTGAGGACGG .............................................. GTTTTCCATTTTTCTTTAATTTTATTTATA 709396 46 97.8 30 TTTATTTATA ............................................G. CATTGATGATTTGAGTCGTTATGAAAGTTC 709472 46 97.8 30 ATGAAAGTTC ................................T............. GGACTCTCAAGACTTCCTACGCTCAGCTTT 709548 46 100.0 30 GCTCAGCTTT .............................................. TAATTGATGTTGGACTCTCTCGTTAGTACA 709624 46 100.0 CGTTAGTACA .............................................. TTAATGACTC ========== ====== ====== ====== ========== ============================================== 6 46 30 GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGCGATTGATAACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:69.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [137,88] Score: 0/0.18 # # Final direction: R [0.37,0.41 Confidence: LOW] >NC_013192 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1403072 37 100.0 37 ATCCACTATT ..................................... TAAAAGATCCTGATGAGCTTCTAATTGGATTAGATAT 1403146 37 100.0 37 GATTAGATAT ..................................... TTTTAATTTAGACTCCTCTTCTTTCTTGTCTTCATTT 1403220 37 100.0 36 GTCTTCATTT ..................................... AATTGAGAAAAGAGGTGTACACAGGTGTAAATCAAC 1403293 37 100.0 39 GTAAATCAAC ..................................... TTTTTTCAAGGAGAAAATAAAATGAATAAGTACAAGCAA 1403369 37 100.0 39 GTACAAGCAA ..................................... CGAAGGTGTAAATGGAGAAAGATATTCTGATTTAATAAA 1403445 37 100.0 40 ATTTAATAAA ..................................... GTTATTCCGAACATGTCGGAGTGTAGGTTGTTCGGGGACG 1403522 37 100.0 39 TTCGGGGACG ..................................... AACTCTTCATTAGTGAAGAAAGGAGTAGGGCTAAAAACA 1403598 37 100.0 GCTAAAAACA ..................................... CCGTACTTTT ========== ====== ====== ====== ========== ===================================== 8 37 38 GTTTCAATCCTTGTTTTAATGGATAACTTACTTTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.97%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.70,-2.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [228,361] Score: 0/0.18 # # Final direction: R [0.37,4.5 Confidence: HIGH] >NC_013192 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1616840 37 94.6 39 TAAAAAAGTT ....TT............................... TTTTAACAGGATGGACTGAATGGAACGCTGCTGAATGTG 1616916 37 100.0 37 GCTGAATGTG ..................................... TTGTCTACCATTATACATTTGTTTCCATCTCACATCT 1616990 37 100.0 38 TCTCACATCT ..................................... GATTTGAGAATTTTATGTTATGTAAAAGAACTTTTGAA 1617065 37 100.0 38 AACTTTTGAA ..................................... GAATTCCATTTTCACGACAAAGTTTACTACAGATACGA 1617140 37 100.0 40 ACAGATACGA ..................................... TATTATACTTCAGATAAGAAAGGTGAGATGAGAAAGACTT 1617217 37 100.0 35 AGAAAGACTT ..................................... ACCAGTGGTACAAGGATATGGACAACAACAAGTAT 1617289 37 100.0 39 CAACAAGTAT ..................................... CTGATTTAACTTTTGCTGTATTAACATCACTTACCGTAT 1617365 37 100.0 38 CTTACCGTAT ..................................... AAATGACATAAAAAATGATCGAGACATCAAAAGATTAA 1617440 37 100.0 36 AAAAGATTAA ..................................... TAGAAGACATACCAGAAGTTGGAAAATTTTGGATGG 1617513 37 100.0 37 TTTTGGATGG ..................................... TAAACAAGATGTCCTTTATAATACCGTATCATTCTTT 1617587 37 100.0 38 ATCATTCTTT ..................................... ACAATTGGTCTACAAAATAAAATTTAGGTTTATGCTTT 1617662 37 100.0 37 TTTATGCTTT ..................................... ACACATTACAAGTAGACGGTATAGAATTAGATCCTGA 1617736 37 94.6 TAGATCCTGA AA................................... ACCCGTCTTT ========== ====== ====== ====== ========== ===================================== 13 37 37 GTTTCAATCCTTGTTTTAATGGATACTCTACTTTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.27%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.70,-2.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [83.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [143,385] Score: 0.18/0.18 # # Final direction: R [0.64,4.68 Confidence: HIGH] >NC_013192 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 879301 29 100.0 35 TAATGATTTA ............................. TATTAGAAACCTTGTTTTTAATAACAGGATTTTTT 879365 29 100.0 36 AGGATTTTTT ............................. CTCCCTACATCTTGTATTTTTAACACTCTTGTGCTA 879430 29 100.0 35 TCTTGTGCTA ............................. GCAAATGAAACTTTTAGTTGTGGATTGAAACATCC 879494 29 100.0 36 TGAAACATCC ............................. GGAATAAAAGAAAAATTGGAGGAATACTTAAACCAC 879559 29 100.0 35 CTTAAACCAC ............................. GATGCTTTTAGTGCTTCTGCGAAAGTTTCAAAACT 879623 29 100.0 35 TTTCAAAACT ............................. CAAGTATCTACCATCTGCATCTTTCCACAATTTCA 879687 29 100.0 36 CACAATTTCA ............................. AACACATTCAGGCACTCAATGACTATCTTAGCTGGC 879752 29 100.0 36 CTTAGCTGGC ............................. TCGTATATTATATGAGGATTATAATACTTGTCAGCT 879817 29 100.0 36 CTTGTCAGCT ............................. GCTTTTCAACCCATTTAATATCCGTTTTAATGTTGT 879882 29 100.0 36 TTAATGTTGT ............................. CATCTTAAAGCTGTATTTAATACCACTGACAAGGAA 879947 29 100.0 36 TGACAAGGAA ............................. CTCCTCTTTGCCAATGTTGTTTTTAATTTGCACTCG 880012 29 100.0 36 TTTGCACTCG ............................. GATTAGTAAATACATAATGCAATAAGTCTAAATCAT 880077 29 100.0 36 TCTAAATCAT ............................. AATCACTTTGTATGCTTGACTTAAACTTACTTCCAA 880142 29 100.0 36 TTACTTCCAA ............................. TTGCGTCTTCGATATAATCGAGAACGATTCTTTCAA 880207 29 100.0 38 ATTCTTTCAA ............................. GCTTTCTTGATATTATTATACTATACTTTTTATCAAAA 880274 29 100.0 36 TTTATCAAAA ............................. GCCTGTTAAGGACTTCAACAAGTTTTTCGTTTTGTG 880339 29 100.0 36 TCGTTTTGTG ............................. TTGTGAATATTTACTATTTGTTTCTCAACTTTAAAT 880404 29 100.0 35 AACTTTAAAT ............................. TCCGCCGCCGGACCGTAAATAATCGTATTATTGCT 880468 29 100.0 37 TATTATTGCT ............................. AATTGTATTATATGGAATGTTGGGACTGGCTGGTAAA 880534 29 100.0 36 GGCTGGTAAA ............................. GTGTAAACGGAGATTACAACAACATTATTAGAAAAC 880599 29 100.0 36 ATTAGAAAAC ............................. ATAATACCATTAAAGGCTTTATTTTTGAGTTTAATT 880664 29 100.0 36 GAGTTTAATT ............................. TTGTATTGTTTGTGTCAAATTCTCCTAGAAGTGTAC 880729 29 100.0 36 AGAAGTGTAC ............................. ACAGGTATGGCACGTTCGGTTAGGTCTAATTAAATC 880794 29 100.0 34 TAATTAAATC ............................. TTTTCTCTAATTCTTTAATTTTTGAATACAAACT 880857 29 100.0 36 AATACAAACT ............................. TTCTTTATCTGAGCCTAAAATATCATCTAAAATTCT 880922 29 100.0 35 CTAAAATTCT ............................. CAAAATTATTGGACTTTGGTAACTTTGATACAATT 880986 29 100.0 36 TGATACAATT ............................. TATATTGCCTTGTACTTGCCTTTACATATTGGTATC 881051 29 100.0 36 TATTGGTATC ............................. TAAAAATTGATAAAACTTGTTAATTAATACTTATTT 881116 29 100.0 35 ATACTTATTT ............................. GTTTTTAATGGAAAAAATGCAATAGATATTATGGA 881180 29 100.0 36 ATATTATGGA ............................. TTATTCAACATCTCCTTATAGTTTTTATTAATTTTT 881245 29 100.0 35 ATTAATTTTT ............................. TTAGTAAATACTTGTTGGGAAACAGAGAAATTATA 881309 29 100.0 36 AGAAATTATA ............................. GATGTAAAAGACGAAGAAGGGAATATTAATCTTAAA 881374 29 100.0 36 TAATCTTAAA ............................. GAAAAAGGACTTAAAAGATTTCGAGCAAGAAGAAAA 881439 29 100.0 36 AAGAAGAAAA ............................. ACTTTTGAGGAAACTGCTGAACACATCTTGAAAGAT 881504 29 100.0 36 CTTGAAAGAT ............................. AGTTATATCGCCAAAAACCTTTTTCAGCCTTCTGTA 881569 29 100.0 36 GCCTTCTGTA ............................. CTTGTTGTGCTTTAAATTTAGTTAGTTTTGCCATCT 881634 29 100.0 36 TTTGCCATCT ............................. GCTTACACATTTGCTCAAGGAATTAATGGACGTTGG 881699 29 100.0 35 TGGACGTTGG ............................. TTCCCGCCCGCAGCCCTTCAGTTGTGCCAAGTGTG 881763 29 100.0 36 GCCAAGTGTG ............................. TCAACTCCCCTTATTTTCTACCAGTACCTTTAAAAA 881828 29 100.0 36 CCTTTAAAAA ............................. ATTCATTTATATAATCATATTCTTTTAATTTCTTTA 881893 29 100.0 36 AATTTCTTTA ............................. ATACAAATTGTCTCTTTCCAAAAGTTATTAAATATT 881958 29 100.0 36 ATTAAATATT ............................. TTAAATCAATGATAAATTATTTTCATATCTGAACTT 882023 29 100.0 36 ATCTGAACTT ............................. TAGTGTTAGAGGAATTAACACAATTAAAGATTAATT 882088 29 100.0 36 AAGATTAATT ............................. ATCAAAAAATAAGTATATTAATGATGATAATAATAT 882153 29 100.0 35 ATAATAATAT ............................. TTTTCACTTTCTCGTTGTTGCTGTTTACTAATGTT 882217 29 100.0 35 TACTAATGTT ............................. CGAATTCTTCCATATCTGAAAATTTGCCTTTTTTA 882281 29 100.0 36 GCCTTTTTTA ............................. TGCGGAATTGGCTTTTATTTAATTGAATGTTATTGT 882346 29 100.0 35 ATGTTATTGT ............................. TTCAATACTATATTCTCTAATACTGGAATATCTTT 882410 29 100.0 37 GAATATCTTT ............................. AAAGGTTTCTAAAAACAATATCGGCGATTTCTGACAA 882476 29 100.0 35 TTTCTGACAA ............................. ATACAAATAGAAGTAGTTGCTAACAATAACAATAA 882540 29 100.0 35 ATAACAATAA ............................. TTTCTTCCGCAAATTGCACAAGTTCTTGACTTTAA 882604 29 100.0 36 TTGACTTTAA ............................. TGATATTAAGAGAAAAGATTTGGAAGATGCTTTATT 882669 29 100.0 35 ATGCTTTATT ............................. ATTCACAATCATACACTCCATTAAACGTTGTAGTG 882733 29 100.0 35 CGTTGTAGTG ............................. GTTGCAGGACTGTTTATGGGAATTGCTGAAGCAAT 882797 29 100.0 35 CTGAAGCAAT ............................. ACAGTATCTTGTACTAATCTGTACTCTGAACTTTC 882861 29 100.0 36 CTGAACTTTC ............................. TATGTTTACCGATTTCCCTTTTGACGCTTTTATAAG 882926 29 100.0 36 CTTTTATAAG ............................. CAATTTCGTGCAGTAAGTCATCTTCTTTCTTTTCAT 882991 29 100.0 36 TTCTTTTCAT ............................. TCAAATTTTTGTTCTTTACGATGCAGATTGTTTTGT 883056 29 100.0 36 ATTGTTTTGT ............................. TGATATTAAGGAGGTGTAGATAATAATTGAGTAGTA 883121 29 100.0 36 TTGAGTAGTA ............................. ATAATGGTAATTGGGACTTTTGCGGGCGTGGCCTTG 883186 29 100.0 36 CGTGGCCTTG ............................. TTACTCAATCATATAATTTAAATGATAATATGTTTG 883251 29 100.0 36 AATATGTTTG ............................. AATTATGAAATATGGAAAGGGTATGTTTTTTCAAAA 883316 29 100.0 36 TTTTTCAAAA ............................. TTATCTTTGTATGTTTTTACATCACAATAAAAATAA 883381 29 100.0 36 ATAAAAATAA ............................. ACAATCATCTGTAGGAGTGTGATTTATGGACATAAA 883446 29 100.0 36 TGGACATAAA ............................. AATTTTGATAGCTTTTCTTCTATTTTTGAAGCGGCT 883511 29 100.0 35 TGAAGCGGCT ............................. TAAAAATTTATTTCTTAAATAATTTCTTAATTCTG 883575 29 100.0 36 CTTAATTCTG ............................. GTTGGGAGGACGAATAATGAGAGAAATAAAATTTAG 883640 29 100.0 37 TAAAATTTAG ............................. TTTGTCTATAAGGAAAATATGGATATTTTTGAACTGG 883706 29 100.0 37 TTTGAACTGG ............................. GTTACAGTTCCTCATATTCTTTCAGGTTTTCCAGTAT 883772 29 100.0 36 TTTCCAGTAT ............................. AATAACCGTATTCGTCAGTTTTAAGATTATGTTCAT 883837 29 100.0 37 TTATGTTCAT ............................. CAATTCTGCTTTTTCTATCCAGTTCTGAACATACAGT 883903 29 100.0 36 AACATACAGT ............................. TATAAACTGGCAATTGAAAAATCGTATTCGGGATGT 883968 29 100.0 35 TTCGGGATGT ............................. TATCTTCCTTAGTTATTTGATAATACTTTTTCCAA 884032 29 100.0 36 CTTTTTCCAA ............................. CTTTGTGGTTGTTTTCAAAGATAAGTTCCTTTGCCT 884097 29 100.0 36 TCCTTTGCCT ............................. AGAAGATTTTATGTATGTAAGAAATGGTAAACAAGT 884162 29 100.0 36 GTAAACAAGT ............................. GGAGAATTGAAGAGCCTTTAAAAATTCTGAAGGTAC 884227 29 100.0 35 CTGAAGGTAC ............................. TGTCTAGTGAGCGGAAGACGACCCTTGAAACGAAG 884291 29 100.0 36 TGAAACGAAG ............................. CATCTTCGGTGAAAGCAAATTTTTCTTGTAACTGAC 884356 29 100.0 35 TGTAACTGAC ............................. CGTCTAGTGTAGCAGTTCTTAGCCCACTGCGCAAG 884420 29 100.0 35 ACTGCGCAAG ............................. CCTTTTGAGTTATAATAATATCGCCAAATAAAATC 884484 29 100.0 35 AAATAAAATC ............................. TTTTTATCACATAATTCTAATGAATAATTATCAAA 884548 29 100.0 36 AATTATCAAA ............................. CAAAACAAGGAGCGATAGTTTCGACTATTTTTGGAG 884613 29 100.0 36 ATTTTTGGAG ............................. TTCTGTACATTTGCTATTTTATTCCAGCCCATAAAA 884678 29 100.0 GCCCATAAAA ............................. TGCATTTTAC ========== ====== ====== ====== ========== ============================= 84 29 35 GTTTTAATAGCACAAATTGTATTGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [311,205] Score: 0/0.18 # # Final direction: NA [0,0 Confidence: NA] >NC_013194 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2475507 36 100.0 34 NNNNNNNNNN .................................... TCAAACAGCTTCATGTCATGGGAACAGGCTGCGG 2475577 36 100.0 33 NNNNNNNNNN .................................... CTGGCTCGCACGTCGCCAGCACGCCTTGGGTTA 2475646 36 100.0 34 NNNNNNNNNN .................................... AGATTCCACTGATTAAGGAATATCTCCTCTCACG 2475716 36 100.0 32 NNNNNNNNNN .................................... TCAAATCTGCAATAAGGAAAACTGGAAGGCTC 2475784 36 100.0 31 NNNNNNNNNN ..................................G. ACATCCTGGCAAGCGGCATGACGCAATCCGA 2475851 36 100.0 35 NNNNNNNNNN .................................... GGCTATTTGGTCAATTCAAAGGCATTGGCCGAAAC 2475922 36 100.0 32 NNNNNNNNNN .................................... CTTCTCTATACAGCAGTGACTCGGGCAGCAGA 2475990 36 100.0 34 NNNNNNNNNN .................................... TGATACAGGAAGGAGTATAGAATGGACGTAGATC 2476060 36 100.0 37 NNNNNNNNNN .................................... TCAGAGCGGAAACCTGAAGATGAGTAACGTGGCATCG 2476133 36 100.0 34 NNNNNNNNNN .................................... GGCCAGCGGCGTTGATCAGGCCGTCGCATTCAGG 2476203 36 100.0 35 NNNNNNNNNN .................................... ATTGCACAGATTGCACAGGCTGCACAGATTGTAAG 2476274 36 100.0 34 NNNNNNNNNN .................................... CGGCGTTATCTTTTCCGTCAATGCGGTTGTTCTT 2476344 36 100.0 32 NNNNNNNNNN .................................... GGAAGACCCAACTAAAGAAGAGGCGCTGGCCA 2476412 36 100.0 32 NNNNNNNNNN .................................... GGCGGTGACCACTACATCACGCTATCTGTGCA 2476480 36 100.0 34 NNNNNNNNNN .................................... TGGACTCGGCGGCAAAGACCAGACGCGGGCCGAG 2476550 36 100.0 35 NNNNNNNNNN .................................... AGAAACGGGAGCCAAGACCATGACCACTACCGCGA 2476621 36 100.0 34 NNNNNNNNNN .................................... TCAGAAACGTTCTTCAGCGGCGTGCTCTTTCGCT 2476691 36 100.0 35 NNNNNNNNNN .................................... GTGGAGTCGCTTGAAGGCCAGGTTGCGAAGTTGCG 2476762 36 100.0 33 NNNNNNNNNN .................................... AAACCATCGCACACATACGAAAGGATACAGCGA 2476831 36 100.0 33 NNNNNNNNNN .................................... GGCTGTCTCTTGTCAAGCCGACGCGCAGCAATC 2476900 36 100.0 34 NNNNNNNNNN .................................... GTATGTTCAAACGAATAATCGAAGAGCTGGTTTC 2476970 36 100.0 33 NNNNNNNNNN .................................... GGAGAATCTTCCAATGAAGGTTCTTGTTTCTTT 2477039 36 100.0 33 NNNNNNNNNN .................................... GGAACTGGGAGAAGCGTTGGCGTTCCAAGGTAC 2477108 36 100.0 36 NNNNNNNNNN .................................... CAAGGCATGGCGTACGCACCATGCGGAAAACCTCGT 2477180 36 100.0 35 NNNNNNNNNN .................................... GCTGAGAAGGCGCGTGTAGTGTCCGTGTCAGGGCA 2477251 36 100.0 34 NNNNNNNNNN .................................... GAGCGTGTCAAGCTGTGCGGCCGCTGTATCCCGC 2477321 36 100.0 33 NNNNNNNNNN .................................... CCTGCGAGATTGCCGCACCGAGAGGGTGGCAAC 2477390 36 100.0 34 NNNNNNNNNN .................................... AGAGCTTCGCCAGGATGTTGATTGGGCGTACCTG 2477460 36 100.0 34 NNNNNNNNNN .................................... AAATGGCTTTTGTATGCGTGGCACCTATTGACGA 2477530 36 100.0 35 NNNNNNNNNN .................................... CCAATCGCTGATCGAGGACTGAACCATGAGCACAC 2477601 36 100.0 31 NNNNNNNNNN .................................... ATTTCGACTTGGCTTGATAGTCCATTATAAT 2477668 36 100.0 34 NNNNNNNNNN .................................... ACGACGACAAACAGCGCACGGCGCACGGATTTCA 2477738 36 100.0 35 NNNNNNNNNN .................................... AGTTTGAAGCCCTCGTTGTCGAATCCAAAGCCGCC 2477809 36 100.0 36 NNNNNNNNNN .................................... GGTTGGAAAATGCTGCAAAGGAAAAAGCCGCACTCG 2477881 36 100.0 33 NNNNNNNNNN .................................... CGAGGTTGTGCTTTACCGGTGCGTGCCGATCGG 2477950 36 100.0 32 NNNNNNNNNN .................................... GACGATCGAGCAAGAGGCGATCGATCTGGAAA 2478018 36 100.0 32 NNNNNNNNNN .................................... CCGATTGGTATTGGCATGGCCATGGGCTACGG 2478086 36 100.0 33 NNNNNNNNNN .................................... CGCATTCGGCCCAGCAAGGGCTGCCGCCTTCAG 2478155 36 100.0 33 NNNNNNNNNN .................................... AGCCGTGTCTCGCACGGCCGCACGAGACACTTT 2478224 36 100.0 34 NNNNNNNNNN .................................... GGTGAAGACCGTTGCACCTGCCGCTGCCGCTGAC 2478294 36 100.0 37 NNNNNNNNNN .................................... ATCAATTGGTTCCCGTTAGCGAGCGGGTATCTATTCC 2478367 36 100.0 36 NNNNNNNNNN .................................... TGCGCTGTATGCCACAGAGCCAAACAGGGAATTTTC 2478439 36 100.0 33 NNNNNNNNNN .................................... GTCGGCACGTGGTGCATCAGATCGGGCAACGGG 2478508 36 100.0 32 NNNNNNNNNN .................................... CCGGCAGTGGCGTCCCCTACTCGACCCTGACC 2478576 36 100.0 36 NNNNNNNNNN .................................... CTATTTGCTATGTCTAATATGGTTACCGTTTCCGAG 2478648 36 100.0 35 NNNNNNNNNN .................................... TGCCGGGCTCGGCGAAGGCAAGCACATTGCGCAAC 2478719 36 100.0 36 NNNNNNNNNN .................................... CTCGTCACCATTTCCGTAGCCGAACGGTTGAGCAGC 2478791 36 100.0 35 NNNNNNNNNN .................................... GTGCAGAAGCGATCACATGATGCCTGGGCCGCCGC 2478862 36 100.0 36 NNNNNNNNNN .................................... TCCTCGCGCTGGCTCGCACGTCGGCGGCGCGCCTTG 2478934 36 100.0 35 NNNNNNNNNN .................................... CTCTGGTGTTTTGCCGAGCCGACCGGCCAGGATGT 2479005 36 100.0 35 NNNNNNNNNN .................................... AAAAAAATGCCTGAAATGCGGGTTCAAATTCCTGA 2479076 36 100.0 34 NNNNNNNNNN .................................... TCTGCTGCGAGCGCCGGCCGGCGCCGCATGCAAC 2479146 36 100.0 34 NNNNNNNNNN .................................... TCAAAGGCCGCGCAAACTGAGCCGGTCAGCCCTG 2479216 36 100.0 35 NNNNNNNNNN .................................... GCAAGGGCTGCCGCCTACCAGGCCTCGGAATTGCC 2479287 36 100.0 34 NNNNNNNNNN .................................... CAACAATGCTTTACGGATGCGAACTCCCCGAGGA 2479357 36 100.0 35 NNNNNNNNNN .................................... TCGCGCTTCCTTTGCTGCCAGGATCCGGAGTCGCG 2479428 36 100.0 32 NNNNNNNNNN .................................... TGGCTCAGCCGGGTGCGTCAGACAAAAATTCG 2479496 36 100.0 35 NNNNNNNNNN .................................... GTGTACGACGACATCCAAGGCGGCCCGGAAGGCGT 2479567 36 100.0 35 NNNNNNNNNN .................................... CACTCGCTAATCCTCTGCCGGAACAGATTATTTTT 2479638 36 100.0 30 NNNNNNNNNN .................................... GCATATAAACGGGCTGCGCACGGCAAACGG 2479704 36 100.0 35 NNNNNNNNNN .................................... ACACCCACAGCAGCCGCGGCGGCACGCATGGCGGA 2479775 36 100.0 36 NNNNNNNNNN .................................... AGACCGACACCGGCCAGGCGGAACCTGGGGCGAGAC 2479847 36 100.0 35 NNNNNNNNNN .................................... GTAGCGCTGGCCATGATGGGAGTAACGCAAAAATT 2479918 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 64 36 34 GTCTCAATCCCTTTGATTTCAGGGCTGGTTACTGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.70,-6.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [41.7-45.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [369,7] Score: 0.18/0.18 # # Final direction: R [0.18,0.78 Confidence: MEDIUM] >NC_013201 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 31920 30 100.0 36 NNNNNNNNNN .............................. TCCGAGACGTGTTCCCTCTCTAGCTGTGCATCTTCC 31986 30 100.0 37 NNNNNNNNNN .............................. CAGATCTAAAACAATGTCATACGGAAAAATCGACATC 32053 30 100.0 37 NNNNNNNNNN ............T............A.... GATCCGGAATATGAAGTGACGAACGATCCGGATACGG 32120 30 100.0 35 NNNNNNNNNN .............................. TCGACGAGATCGGCGCGAACTCGTTCGCTGATACT 32185 30 100.0 34 NNNNNNNNNN .............................. TCGGGGACCGAGACGACGGGGCCGGGTGCTGTCT 32249 30 100.0 37 NNNNNNNNNN .............................. CCGGAGGGGCCGCTGCGTGGGTGATCTGGAGAGAAGA 32316 30 100.0 36 NNNNNNNNNN .............................. GTTGCGTGAGCTAGCGAAACACCGAGTCCGTGTGAT 32382 30 100.0 36 NNNNNNNNNN .............................. ACGGAAATCCAGCCGATCACCCTCCGAGAGGAGAGG 32448 30 100.0 35 NNNNNNNNNN .............................. CGGACATTCAGAAGCGCCTGACTAACCGCATGGCT 32513 30 100.0 36 NNNNNNNNNN .............................. CGGGAAGACCACGACCGCCCGCGCCCTCCAGTTCGA 32579 30 100.0 38 NNNNNNNNNN ...............C.............. GGCTTCTACGTCGGCAACCGGACCGAGGACGGCGATGG 32647 30 100.0 35 NNNNNNNNNN .............................. AAGTACGCCTCGATCATCAACGGCGTCCGGGCTGT 32712 30 100.0 35 NNNNNNNNNN .............................. GATGCTGTTGAGCTCGTAGCGATCCCACTCGGCGT 32777 30 100.0 35 NNNNNNNNNN .............................. AGCCCTTGTGCAATGATCGGGAGTGCAATCCGACC 32842 30 100.0 36 NNNNNNNNNN .............................. TCAGGCGAGTTGTCGGACGAACAGCTTGAAGCGTGT 32908 30 100.0 35 NNNNNNNNNN .............................. TCGTCGAGCGGCAGGCCGCCGACCGCTACGGGCTG 32973 30 100.0 36 NNNNNNNNNN .............................. CGACACGGTCGAAGATGCTGGCAGCTCGCGAATCGC 33039 30 100.0 37 NNNNNNNNNN .............................. GGATCTCGACGGCCGCGTGGCCGTGCATCTCGGGGTC 33106 30 100.0 35 NNNNNNNNNN .............................. AACGCTTCAACGCGCTCTATTGACCGAGCGTATCG 33171 30 100.0 37 NNNNNNNNNN .............................. AGATCTCGCGGATAAGCTGCCCCCGCCCTCCCATGAG 33238 30 100.0 37 NNNNNNNNNN .............................. CACTTCGAGCGGACTTTGGGCCACCCCGGAAAGTCAG 33305 30 100.0 36 NNNNNNNNNN .............................. CGATACGTCCGGGACGCCCGTGACGACCACCACTGC 33371 30 100.0 36 NNNNNNNNNN .............................. GGAGGAGCGGATGGACATGAGCGACACGACGATCCG 33437 30 100.0 34 NNNNNNNNNN .............................. GAGCATCTCTCCAATCAGCGGTCATCAACCGCGA 33501 30 100.0 35 NNNNNNNNNN .............................. AGTATCTGTCTACGCGATACCGCACCGTCAGAGTG 33566 30 100.0 36 NNNNNNNNNN .............................. TACGACCTTCCCACTGAGGGTCTTGAGCTAACGATT 33632 30 100.0 35 NNNNNNNNNN .............................. GCGACGTGCTTACCTCTGACGCCAATATTGACCTT 33697 30 100.0 35 NNNNNNNNNN .............................. TTCATCAAGAGGCACACAAGCATGGTGCGTCCAAA 33762 30 100.0 36 NNNNNNNNNN .............................. CTGGCCTACCCGAGTCGGTTCCCCGCAGCACTCGCA 33828 30 100.0 35 NNNNNNNNNN .............................. ACGATCGTCACCGACACCCTCGGGGCCGGCGGCGC 33893 30 100.0 36 NNNNNNNNNN .............................. GAAACGACCGAGACGCAAAGCGAGTTCACACAACTC 33959 30 100.0 36 NNNNNNNNNN .............................. TTAGATGATCAGGTAGCCTGCTACCAGTGCAGCTGC 34025 30 100.0 36 NNNNNNNNNN .............................. GAGACCCAGCTTTGCCTTCCAGGTGATCAGCTCGTA 34091 30 100.0 39 NNNNNNNNNN .............................. TCGAAGCGCTCGGTCGCGACGGAGACCAGCGACCAGCTG 34160 30 100.0 37 NNNNNNNNNN .............................. TGACGACCACACACACGAGGCCGTGCGTGTGCTTGTA 34227 30 100.0 35 NNNNNNNNNN .............................. CCACGTCCCGGTGACACGCAGCTCGGTGAGATCGC 34292 30 100.0 37 NNNNNNNNNN .............................. CATGGAGTCTTCAACATTTCATGGGCTGGGCTTGGCC 34359 30 100.0 35 NNNNNNNNNN .............................. CGCAACCCGACGATCGAGGACGGGCCGTCCCTGGA 34424 30 100.0 36 NNNNNNNNNN .............................. GCGTCGGACTGCGTCGATAGTGTTCGTGCTCATGTT 34490 30 100.0 35 NNNNNNNNNN .............................. CAGACTTCTACTGGAAGGCGAAAACTGAGAAGGCA 34555 30 100.0 37 NNNNNNNNNN .............................. TACGCTCGACGACCTCCGTCGTGCGCTCCAGAAGTCA 34622 30 100.0 38 NNNNNNNNNN .............................. GCGCTGCGGACGTGGTGTCAGAGGGGTTACCAGTAACT 34690 30 100.0 35 NNNNNNNNNN .............................. ACTCCGGGTACACTGGTGGCGATGCTCTACTCGCC 34755 30 100.0 35 NNNNNNNNNN .............................. ACACGTTTCTTTTTTTCAGGAGCCATCACTCACTC 34820 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 45 30 35 GCTTCAATCCCACAAGGGTCCGTCTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTTTCAGACGAACCCTTGTGGGTTTGAAGC with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-3.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [45.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [64,379] Score: 0.18/0.18 # # Final direction: R [0.37,1.73 Confidence: MEDIUM] >NC_013194 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2565676 29 100.0 32 NNNNNNNNNN ............................. CACGCCGTGACGGAAGGGCTGATCACGAAATG 2565737 29 100.0 32 NNNNNNNNNN ............................. GCGCGGCATGGCCTGGCGCATGGGCTTGGCGG 2565798 29 100.0 32 NNNNNNNNNN ............................. CCATCGCTCCAGGCGACACGCCGCAAGCGGCG 2565859 29 100.0 32 NNNNNNNNNN ............................. ACGCGGCCATCGAATTCGGTGGTCTTGCCGCC 2565920 29 100.0 32 NNNNNNNNNN ............................. TGTGCTGGCGCGTGAAGTCGCAGCCCATTGGC 2565981 29 100.0 32 NNNNNNNNNN ............................G CAAAGCCACAATCTTTTCTGACGGCCACCCGG 2566042 29 100.0 32 NNNNNNNNNN ............................. CGGCGTGTTCGAATTCAATGGTCTTGCGCTCG 2566103 29 100.0 32 NNNNNNNNNN ............................. GCCTGCCGGCTGGCCTTGCGCATCGGGCTCGG 2566164 29 100.0 32 NNNNNNNNNN ............................. GGGCGGCCCATACCGGTGACGCCCTTGGTAGG 2566225 29 100.0 32 NNNNNNNNNN ............................. CTTCCCGGCGCATGTCGTCGGCACCTGACTAG 2566286 29 100.0 32 NNNNNNNNNN ............................. TTTTCGATCACTTCCTGGCCTTGCACGGCAAG 2566347 29 100.0 32 NNNNNNNNNN ............................T CAGCCCCTACGAGCGCACCGACGACCCGATTG 2566408 29 100.0 32 NNNNNNNNNN ............................. TTTGGGCGCAAGGATGACGCCGAACGAGAAGT 2566469 29 100.0 32 NNNNNNNNNN ............................. TGGGCCGCCGGAATGGAGGCGACGCTTTACCT 2566530 29 100.0 32 NNNNNNNNNN ............................. GCGCGGCATGGCCTGGCGCATGGGCTTGGCGG 2566591 29 100.0 32 NNNNNNNNNN ............................. CTCGGGCGGTGCACGTTGGTGTGTCTCGGATG 2566652 29 100.0 32 NNNNNNNNNN ............................. CAAGGCTGATGGGCTGCTGTGCCGACTCCCCG 2566713 29 100.0 32 NNNNNNNNNN ............................. GCAGAGCTAAGTGGCCGGCCGCTTGCGGACGG 2566774 29 100.0 31 NNNNNNNNNN ............................. GCCCGGAGCAATCCGGGCTCACATTTGGATA 2566834 29 100.0 32 NNNNNNNNNN ............................. ATCCTGTGCAAGCGGGCGTTTGTCGGCTGGTG 2566895 29 100.0 32 NNNNNNNNNN ............................. AGATTATTTCCGCGCGCAAAGCGGCCGGGCTA 2566956 29 100.0 32 NNNNNNNNNN ............................. ACATGAAAGCGACTCAGATGAATGAATATCCA 2567017 29 100.0 32 NNNNNNNNNN ............................. CACGGCGACGACCGGGGCGGGCAGCATACCGA 2567078 29 100.0 32 NNNNNNNNNN ............................T TCGCGAAGCCTCCACGAGTAACCGGCGTGTTC 2567139 29 100.0 32 NNNNNNNNNN ............................. CACAGGAGAACGAGATGAGCGAATTATTGAAA 2567200 29 100.0 32 NNNNNNNNNN ............................. GAGGTTCCCATGCTGGCGTCGTCGATGACGGC 2567261 29 100.0 32 NNNNNNNNNN ............................. GGCGCCCGTTAGCTATGGGTGTTATTCGGGCA 2567322 29 100.0 32 NNNNNNNNNN ............................. TTACCACTGCCCCAAGGTGGCGAGCTTGCGCG 2567383 29 100.0 32 NNNNNNNNNN ............................. TGGCGGTAGCTCAAGGTTTCCTTGATGGCATT 2567444 29 100.0 32 NNNNNNNNNN ............................. GCTCTGGCGGGAAGGTCGCGATCTCCGCCAGA 2567505 29 100.0 32 NNNNNNNNNN ............................. GAGTGGGATGCTTCCTACGCTATCAGTCGTTG 2567566 29 100.0 32 NNNNNNNNNN ............................. AGCCAAGCCAACCCACTCCAACAGCTTGCGCC 2567627 29 100.0 32 NNNNNNNNNN ............................G CATGCAGCGCGTGGCGCAGCAGGTGATCTCAG 2567688 29 100.0 32 NNNNNNNNNN ............................. CCGTAGCCCATCAGCCGAAAATCCTTCTTCGC 2567749 29 100.0 32 NNNNNNNNNN ............................. CAGACCGGCCGCCGGTGGTGGTGGTGGCGGTT 2567810 29 100.0 32 NNNNNNNNNN ............................. GGGGCCGCTGTGCGGTCCGACACATAGGCCCG 2567871 29 100.0 32 NNNNNNNNNN ............................. CGCCCCATGAACAGCGAAGACGGGCAGATGGA 2567932 29 100.0 32 NNNNNNNNNN ............................T TTGCGAAGCGTCAGGCTACCCGTGCCTGAACA 2567993 29 100.0 32 NNNNNNNNNN ............................. CGATAGACGGCCACGATGCGCGAGGCCCATAC 2568054 29 100.0 32 NNNNNNNNNN ............................G AACGGGGACCGGGCTGGCTACGCGTCAAGCTG 2568115 29 100.0 32 NNNNNNNNNN ............................. TTACCATTGCTTTCGCGCTTGCGCACCGACCA 2568176 29 100.0 32 NNNNNNNNNN ............................. CAGGAGTCTACGTGATGAGTGCAGCAGTTCAG 2568237 29 100.0 32 NNNNNNNNNN ............................. CGCCGTAGCAGGCTGATGTGCCCGTCGCACTC 2568298 29 100.0 32 NNNNNNNNNN ............................. ATCTCTTGGGAGCAAATCCGCAATCCGTCGTC 2568359 29 100.0 32 NNNNNNNNNN ............................. ACCCGGTCTAGTCTTTCCCGTTTGAGATACTC 2568420 29 100.0 32 NNNNNNNNNN ............................. GGATAGGCCGCTCACGACTGCCGAGTATGTCG 2568481 29 100.0 32 NNNNNNNNNN ............................. GAGTTCGCCAAGTCTGCCGCGCAGAATATCCA 2568542 29 100.0 32 NNNNNNNNNN ............................. GAGTCCGGCCGCCCGACGCGCTGCTCATACGG 2568603 29 100.0 32 NNNNNNNNNN ............................. CTCAAGGCGCAGATTGCCGCGCTCGAGGACAA 2568664 29 100.0 32 NNNNNNNNNN ............................. CTGGGGCGAGACAGGAGAACGAGATGGCGATG 2568725 29 100.0 32 NNNNNNNNNN ............................. GCTTACCGTAAGCGTCAGAGTAAAGACAAGAC 2568786 29 100.0 32 NNNNNNNNNN ............................. GAGATTGTCGAAGCCGCAGCGATGCCGGCGCC 2568847 29 100.0 32 NNNNNNNNNN ............................. AAGACGGCGCCCGCACAGGCCCCGGACAACCC 2568908 29 100.0 32 NNNNNNNNNN ............................. TTTGGCGATCCAGATGCGACTTTGACGAATCC 2568969 29 100.0 32 NNNNNNNNNN ............................. CTCGCCGCACTTCCGCCACCAGCCACCAGCCT 2569030 29 100.0 32 NNNNNNNNNN ............................. TCGCCCTCAACACTGACGAAAACCCCGTTAAC 2569091 29 100.0 32 NNNNNNNNNN ............................. GGCGGACGCGAAGCGCTGCACCACTATTTGGT 2569152 29 100.0 32 NNNNNNNNNN ............................G CAAAGCCGGTTACGTCAGCGGTCTGCGCTACT 2569213 29 100.0 32 NNNNNNNNNN ............................. GCTGGCGTAACCGGCCTTGCGCCTGGAAAGGA 2569274 29 100.0 32 NNNNNNNNNN ............................G TGACGTTGACGCCAGACTCGGATCGGGCCGCC 2569335 29 100.0 32 NNNNNNNNNN ............................. GGCTGCTGCAAAGTGCTCGGTCTCGCACTCGA 2569396 29 100.0 32 NNNNNNNNNN ............................. ATGTCGCGCGGCACATAGTCGGTGCCGACAGC 2569457 29 100.0 32 NNNNNNNNNN ............................. GGGTGCGGCCACTCTCCGCGCTCTTGCAAGTG 2569518 29 100.0 32 NNNNNNNNNN ............................. ATTTGGTCAAGCGCATCCGCGGCTCGCGCGTA 2569579 29 100.0 32 NNNNNNNNNN ............................. GAGGTGGCTCTCGACCTGGCCGCCGCCTTCAA 2569640 29 100.0 32 NNNNNNNNNN ............................. CCGATTGGTGCATACGCTGTTGTCGACGCCAT 2569701 29 100.0 32 NNNNNNNNNN ............................G CGGCGATGTGGGCTAAGGTGGTGCGGAATGCG 2569762 29 100.0 32 NNNNNNNNNN ............................. TGGATTGCGGCGGTCGAGATTCGGCAGGATTT 2569823 29 100.0 32 NNNNNNNNNN ............................. CGCCCGTTCCGCTACCTGGAAAACGTCAGCGC 2569884 29 100.0 32 NNNNNNNNNN ............................. GTGCTTGGCTCCGCCGGCATTCGCCTGCAGAT 2569945 29 100.0 32 NNNNNNNNNN ............................. ACGCGACAGGGCGAATCGACTTGATGGTTGCC 2570006 29 100.0 32 NNNNNNNNNN ............................. CATTCCAGGCCATCCCCCTCCATGCCGTGGAA 2570067 29 100.0 32 NNNNNNNNNN ............................. GACATGGGTCGCGCCGACCGAAGACGAAGAGC 2570128 29 100.0 32 NNNNNNNNNN ............................. CATGCGGAGGCGTAATGATTTACTCCGGCCCA 2570189 29 100.0 32 NNNNNNNNNN ............................. AGAATATTGCCCCCGACCAAGCCGTCGACCAA 2570250 29 100.0 32 NNNNNNNNNN ............................. TTACGACTGCCTCCAGCCCGAATCGCTCGGTC 2570311 29 100.0 32 NNNNNNNNNN ............................. GCGACCGTCTATCCGACAAGTTCAGGCACCAA 2570372 29 100.0 32 NNNNNNNNNN ............................. GTATCCAGCGGACGATGTCACCATACCCGGCA 2570433 29 100.0 32 NNNNNNNNNN ............................. CGCCGCCGATCCACCTTTGACCCGCCCGACAC 2570494 29 100.0 32 NNNNNNNNNN ............................. CGAAGGAATGCTGAAAGGGTTTGGCGACGCAA 2570555 29 100.0 32 NNNNNNNNNN ............................. CTCGAGCTGGACCGCAATCTGGAGTCTGCCCT 2570616 29 100.0 32 NNNNNNNNNN ............................. GACGCCATCGAGGCGATCGAGGCGCAGATCGG 2570677 29 100.0 32 NNNNNNNNNN ............................. GTCCGAGCATCGCGGCGTATCAAAGCGCGGGG 2570738 29 100.0 32 NNNNNNNNNN ............................. TCCACAGCGTAGAAATGCCGCCACCTCCCGGG 2570799 29 100.0 32 NNNNNNNNNN ............................. GAGGCGATATTGCTGCAAGCCACGGGCACGGC 2570860 29 100.0 32 NNNNNNNNNN ............................. GGCGGCTGTCGTGGTGTATTTGCCAGGCCAGA 2570921 29 100.0 32 NNNNNNNNNN ............................. CATGCAAGGTGCTCAGGTATCCCGGCGGGGTT 2570982 29 100.0 32 NNNNNNNNNN ............................. CCGCACCACGACGACACCAGCTTACTACGGCC 2571043 29 100.0 32 NNNNNNNNNN ............................. TCGCCCATATCGGTATCTGTCCAGAGCGCAGC 2571104 29 100.0 32 NNNNNNNNNN ............................. TGCTGCGGGATCATCGCGTCGGCACGCCCGGC 2571165 29 100.0 32 NNNNNNNNNN ............................. TGTACGGTCGGGGGTGCTGGATATATATCGAG 2571226 29 100.0 32 NNNNNNNNNN ............................T TGCGGACACCTGCACGCGCTGCGCCGCCGACA 2571287 29 100.0 32 NNNNNNNNNN ............................. TCGGGATACATCGTAGTCGATACGCTCAGGGT 2571348 29 100.0 32 NNNNNNNNNN ............................A TACTGCAATGGCGCCTCGCCGACGCCCCGAAA 2571409 29 100.0 32 NNNNNNNNNN ............................. CGCTGGCGCCGATCGCGACGACCACGCCAGCG 2571470 29 100.0 32 NNNNNNNNNN ............................. CGTCGATCGCGACATCAGCACCGACACGGACC 2571531 29 100.0 32 NNNNNNNNNN ............................. CAGACGACGCTGTACCTCAAAATCTACCAGCT 2571592 29 100.0 32 NNNNNNNNNN ............................. AGCGACCACGCGCTAAACCCTCTCGACCGCAA 2571653 29 100.0 32 NNNNNNNNNN ............................. CCGGCCGGCACGAGGTCGGTCGTGGTTTCCGT 2571714 29 100.0 32 NNNNNNNNNN ............................. ACCAGCGTGGCGCCGGTGGTCAAGAAGGGCGC 2571775 29 100.0 32 NNNNNNNNNN ............................. GTCCGACGCGAAACGCCCATACACCACATTTG 2571836 29 100.0 32 NNNNNNNNNN ............................. AAGAGTGCTGGTTCCACACTTGCGACAAGGAC 2571897 29 100.0 32 NNNNNNNNNN ............................. GGTGCATCAGCCTCCGACACCGGCAGCCAAGA 2571958 29 100.0 32 NNNNNNNNNN ............................. GGCCCTACCCTCCGGGCGTCTATTCCATCTGC 2572019 29 100.0 32 NNNNNNNNNN ............................. CAGGGGCATAACACCACCATGTCGCCCTGCTG 2572080 29 100.0 32 NNNNNNNNNN ............................. GGCAGGACCGATAGACGCCCCTTGACCCAATC 2572141 29 100.0 32 NNNNNNNNNN ............................. TTCGGCGGCGAGTCAGTAAATGGCGGATCGGC 2572202 29 100.0 32 NNNNNNNNNN ............................. AACTCGGGACTTACTTCGACCACGCGCCGGAC 2572263 29 100.0 32 NNNNNNNNNN ............................. CGAAAAAAAGGCGCGTTAGACTCGATTTTTGA 2572324 29 100.0 32 NNNNNNNNNN ............................. GAACTGCACCCGACGGCCGTCGAGATTTTCGA 2572385 29 100.0 32 NNNNNNNNNN ............................. GGCGCGGAGCTTCTCGAGGTCGCCGAGCTTGG 2572446 29 100.0 32 NNNNNNNNNN ............................. GATAAGCAGCGGCGCGTCCTGCTGGCCATGGC 2572507 29 100.0 32 NNNNNNNNNN ............................. GGGGCGGCTGTGCCGTCCGCACATTGGCGAGG 2572568 29 100.0 32 NNNNNNNNNN ............................G TCGTGCTGCCGGGCACCAGACCGGCAGCGAAA 2572629 29 100.0 32 NNNNNNNNNN ............................G GTGCCTGGGAAGTGGATCAGGGCTTGACACAC 2572690 29 100.0 32 NNNNNNNNNN ............................. CACGTCACGCTGAATCTCGTCACGCTCGCATC 2572751 29 100.0 32 NNNNNNNNNN ............................. GGCACCGAGTGGATCAGCAGCGTCGACGGGCT 2572812 29 100.0 32 NNNNNNNNNN ............................. ACCTCGACTACGGCCGCGAGTACGACGCCGGC 2572873 29 100.0 32 NNNNNNNNNN ............................. TCCTGATGCATTAGTGACCACGGTATAGAGTG 2572934 29 100.0 32 NNNNNNNNNN ............................. TCGCACACAGCCTCAATTCGGCCGATCCGCGC 2572995 29 100.0 32 NNNNNNNNNN ............................T CAAGCCGGCGGCGGAGATGACACCGCCCAGCG 2573056 29 100.0 32 NNNNNNNNNN ............................. CGCCTTCTCGCTGGGCGGTGTCATCTCCGCCG 2573117 29 100.0 32 NNNNNNNNNN ............................. AGCGCATTGGCGGTGGCCTCCTTGGCCGACTG 2573178 29 100.0 32 NNNNNNNNNN ............................A TCGACCGACCTTGGCGAGACGTGGACGACGGT 2573239 29 100.0 32 NNNNNNNNNN ............................. TACTTCTACGACACCGGCCCGTTCGGCTTGGC 2573300 29 100.0 32 NNNNNNNNNN ............................. TACTTCTACGACACCGGCCCATCCGGCTTGGC 2573361 29 100.0 32 NNNNNNNNNN ............................T TGTGCACTCAGAGGAACACGTCATGCCCAAGG 2573422 29 100.0 32 NNNNNNNNNN ............................. GTAGAAGTAACCGGCAAGCCCCGCTAGGTGCT 2573483 29 100.0 32 NNNNNNNNNN ............................. GCGCCTCCTCTTCCTCGTCGTGCCGACGAAAT 2573544 29 100.0 32 NNNNNNNNNN ............................G CGGCATAATTACCTGACTCCAGAGCAAGTTGA 2573605 29 100.0 32 NNNNNNNNNN ............................. CTGGGGCGCCTGCAGTACGCCGCCAAGCTCTC 2573666 29 100.0 32 NNNNNNNNNN ............................. ATGATCGCCGAGCACACTGAGCCGCTGGAGCC 2573727 29 100.0 32 NNNNNNNNNN ............................. GGCCTGGCGATCGCTACCGGACAAGGCTGCTC 2573788 29 100.0 31 NNNNNNNNNN ............................. TCTCTGGCTACCTGCGCAAGCAACCAGGCTG 2573848 29 100.0 32 NNNNNNNNNN ............................. ACCGCCGAGCGCCTGGCGCACCTGGTGCGGCA 2573909 29 100.0 32 NNNNNNNNNN ............................. GAACGCATCCGGCGCGCGCACTACGTGCGAGA 2573970 29 100.0 32 NNNNNNNNNN ............................. GCCGGGTCTGCGGGGAAGTGCAGGTAGCCAGG 2574031 29 100.0 32 NNNNNNNNNN ............................. AAAATGACCCAGCCAAAAATGATTGCCGCTCT 2574092 29 100.0 32 NNNNNNNNNN ............................. ACGAGGCATCTCGCAAAGCTGCGCTTAAAGCC 2574153 29 100.0 32 NNNNNNNNNN ............................. AAGGTGGCGCGGCCAGCGGCCCACGCGGCCGT 2574214 29 100.0 32 NNNNNNNNNN ............................. CAGCAGGAGCAGCTTGGGAAATCCGCGCGCGT 2574275 29 100.0 32 NNNNNNNNNN ............................. CTCTACACCGACCAGACGCTGTCGACGCTGAT 2574336 29 100.0 32 NNNNNNNNNN ............................. GAGGTCGGCATTCTCGAAGGGCACAATTCTGC 2574397 29 100.0 32 NNNNNNNNNN ............................. CAGCAGTGGCCAGCCACGCAGGACGTGCCCAA 2574458 29 100.0 32 NNNNNNNNNN ............................. GGTGACGGAAGTTCAGGACATACCGGGCAAGC 2574519 29 100.0 32 NNNNNNNNNN ............................. CGACCCGTCCGGGCAGTCTATCCACTTCTCCG 2574580 29 100.0 32 NNNNNNNNNN ............................. GATGTAGGCCAGGCCACGCCAGGCCGGCGCGT 2574641 29 100.0 32 NNNNNNNNNN ............................G TGCCGAAGGTCGGCGATGTAGCGCCGAATGGT 2574702 29 100.0 32 NNNNNNNNNN ............................G TGTGGCCACTGCGGGGTATATCTCGGGTGGCA 2574763 29 100.0 32 NNNNNNNNNN ............................. CATCGACGACGGCCAGCGCCTGGTCGAACAGT 2574824 29 100.0 32 NNNNNNNNNN ............................. GGTGGGCGAGATTCGCGACTCGCGGCCGTTGC 2574885 29 100.0 32 NNNNNNNNNN ............................. CGCAGCACGGGCAGGGCTCGCAGCGCTGCGAG 2574946 29 100.0 32 NNNNNNNNNN ............................. GTCGTCCGGCTTGTGGGATTCGGCAGTATGGG 2575007 29 100.0 32 NNNNNNNNNN ............................G CCAAGGGTCGAGGGCTTGGCGTATACCGCACC 2575068 29 100.0 32 NNNNNNNNNN .............T............... CGGGCGACAGTCTCGCCCCCGGCTGACCTACA 2575129 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 156 29 31 GTTTCCCCCGCGTCAGCGGGGATAGGCCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-13.40,-12.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [6-6] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [65.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [69,117] Score: 0/0.18 # # Final direction: F [0.64,0.37 Confidence: LOW] >NC_013202 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2723382 30 100.0 37 NNNNNNNNNN .............................. TGCGTCGTCCGGTGGCCGTCAATAAATGTCGCAAGGG 2723449 30 100.0 35 NNNNNNNNNN .............................. TCCTACGACCTCGTCGGCGTCAACGGCTGGCCCGA 2723514 30 100.0 35 NNNNNNNNNN .............................. CACCCTACAACAGGTGAAATCTACCAGACAAAAGA 2723579 30 100.0 36 NNNNNNNNNN .............................. TCACCCAAGCGCAAGCAACAGCTGATCGAGGACCTG 2723645 30 100.0 36 NNNNNNNNNN .............................. GCGACGGCGGCCAGTTCCGCGAGGGCGGGAAGGTCC 2723711 30 100.0 36 NNNNNNNNNN .............................. TGCGAGTGTTGCGGGGAACCGACTCGGGTAGGCCAG 2723777 30 100.0 37 NNNNNNNNNN .............................. ACGGTTTCGCTACCACCATCGCCACCAGCAACTGCCG 2723844 30 100.0 33 NNNNNNNNNN .............................. GACGAGTATGCCAACCGGCTCGTGAGCGGGCGC 2723907 30 100.0 35 NNNNNNNNNN .............................. TGGTAGGCGTCGTAGGTGTTCGTGGCGAGCGTGTC 2723972 30 100.0 36 NNNNNNNNNN .............................. ACTCACTGGATTATGACCCCTACAACGAGGGCGTCA 2724038 30 100.0 37 NNNNNNNNNN .............................. GGATCTCGATCGTTGTAGTATCCATAGCTGCTATACC 2724105 30 100.0 37 NNNNNNNNNN .............................. GAAGTAACGCAACTCCAGTGAGCGCTACTGAGAGCCC 2724172 30 100.0 36 NNNNNNNNNN .............................. CCGATCACGCCCTGCCGATACTGGTAGTTCGCGATA 2724238 30 100.0 34 NNNNNNNNNN .............................. TCGTCGGCCGGCTCGTCGGCCGACGTGGACTTGC 2724302 30 100.0 37 NNNNNNNNNN .............................. AGTAGGTCTAATGTCTCTCTGTCGTCTATCAGCCCCG 2724369 30 100.0 36 NNNNNNNNNN .............................. GCTCTCCGGTGTCACAGGTCAGGTCACGGTCTCCGC 2724435 30 100.0 35 NNNNNNNNNN .............................. ACGGACAAGTCATCCACCCGCCAGTATCTCCCGGT 2724500 30 100.0 37 NNNNNNNNNN .............................. AAATACGATCCTGCGGTGACGCTACGTCCGGGGCAGC 2724567 30 100.0 36 NNNNNNNNNN .............................. CAGATGTGGGGTCTGTGGCCACAGTCTAACATCTCT 2724633 30 100.0 35 NNNNNNNNNN .............................. CCTGATAACGGACTCTTGTAGGTCCGTTAGGTCGT 2724698 30 100.0 36 NNNNNNNNNN .............................. AAAAATGAGTGACGTAGACATTCGGCAAAATGCCGG 2724764 30 100.0 35 NNNNNNNNNN .............................. CAGCAGCGAAACGAGCCGTCCGTCCTTTTGAGACA 2724829 30 100.0 38 NNNNNNNNNN .............................. GTCTAGCCCAGTCTGGTCGGGGTGGTCGGCAGGATCGG 2724897 30 100.0 35 NNNNNNNNNN .............................. CACTCCTCATATGTCTGTTCGAGCAGCGGGACGTG 2724962 30 100.0 37 NNNNNNNNNN .............................. ACCGTTGCCGCCGATCGGCAGCGAGCCGGTGATGTGT 2725029 30 100.0 35 NNNNNNNNNN .............................. TCAAAGCGAGCCTCGAACGCGACGACGAAGATATG 2725094 30 100.0 36 NNNNNNNNNN .............................. TCCTCCTTGTACCCACGGTCTTGCCGATCCATCCCG 2725160 30 100.0 37 NNNNNNNNNN ........T..................... GACTGGCGTGTTGCCGTTCAGGCCGGCGTTGATCCCG 2725227 30 100.0 35 NNNNNNNNNN .............................. CTCAGCAGCAGTCAACGGCATTTTATACACCTTGT 2725292 30 100.0 35 NNNNNNNNNN .............................. CACCCCTTCCGGGGAGACGAGGAAACCCCGGACGA 2725357 30 100.0 34 NNNNNNNNNN .............................. GTCACGCTGTCTGACGATATGGCTGACCAGGTGC 2725421 30 100.0 33 NNNNNNNNNN .............................. CACTCCTGGGCGGCCTCATCGGCGGCCATCGTC 2725484 30 100.0 36 NNNNNNNNNN .............T................ GTTGTGTGAGGTATGCGATGGACACCACCGATCACG 2725550 30 100.0 1 NNNNNNNNNN .......................CCCGGCA NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 34 30 35 GTTTCAGACGGACCCTTGTGGGATTGAAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,8] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTTCAGACGAACCCTTGTGGGTTTGAAGC with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-4.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [355,23] Score: 0.18/0.18 # # Final direction: F [1.73,0.37 Confidence: MEDIUM] >NC_013198 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2265855 36 100.0 30 NNNNNNNNNN CACTGAAGTT.TT....................... TATTCAAACTGCATAGCAACTTTTCCAAGT 2265921 36 100.0 30 NNNNNNNNNN AT.................................. GAGGCATGTTAGACGTCATATTTGCTGAAA 2265987 36 100.0 30 NNNNNNNNNN C................................... TCTCGACAACAACCCGTTTTGGCACCACAA 2266053 36 100.0 30 NNNNNNNNNN .................................... TGAAATAATTGTTGACACGTGAGAACACAG 2266119 36 100.0 30 NNNNNNNNNN .................................... ACTGGCATCAATCATCATGAAGTATGCGAT 2266185 36 100.0 30 NNNNNNNNNN .................................... TTAGTGGCAGAGAGGTAATGATGATCACAC 2266251 36 100.0 30 NNNNNNNNNN .................................... GCATATAGCTTGATATTGGCCGCAAGCTCG 2266317 36 100.0 30 NNNNNNNNNN .................................... TTTCTGTCGGGTTTGTGGAATGGCACTGTG 2266383 36 100.0 30 NNNNNNNNNN .................................... GTCTAGCCCGAGAAGTTCCGCGGCTTTTTT 2266449 36 100.0 30 NNNNNNNNNN .................................... CATAAGGTGGCAGCGGCCATTTGTGTTTTT 2266515 36 100.0 30 NNNNNNNNNN .................................... TTTAAATGCGTATTTTCTTTTCTCAACTGT 2266581 36 100.0 30 NNNNNNNNNN .................................... CGCAGTCTTGCAAGCCGTAATGCTCGATCT 2266647 36 100.0 30 NNNNNNNNNN .................................... CCCATAGGCCTAGCTGTCGCCCGTAAGGCG 2266713 36 100.0 30 NNNNNNNNNN .................................... ACAGCCGTCTTGATCTTGTCAGCATCACCC 2266779 36 100.0 30 NNNNNNNNNN .................................... GGGGCTTCTGCAATCTGGAATGCCCTTGGA 2266845 36 100.0 30 NNNNNNNNNN .................................... TAGAATACTACCTTTTGGCACAATATTATT 2266911 36 100.0 30 NNNNNNNNNN .................................... TCAATCGTCATGCCAAGCGGCATAGCACCT 2266977 36 100.0 30 NNNNNNNNNN .................................... TAGTGATCATATTCATGCAACACAAACGGT 2267043 36 100.0 30 NNNNNNNNNN ...............A.................... TTGACAAGTCAAAGTGCTCATACAAGTATG 2267109 36 100.0 30 NNNNNNNNNN .................................... TGAACTCATCGCTTACCGGCAACCAGTCAT 2267175 36 100.0 30 NNNNNNNNNN .................................... GGTGGCATCACAGAAGCAACCGAAACAATC 2267241 36 100.0 30 NNNNNNNNNN .................................... AAGTGGTAAGGTCCCCAAAGATTCGATGAT 2267307 36 100.0 30 NNNNNNNNNN .................................... AGCATCCTATATTTCCATGAATACTGATGA 2267373 36 100.0 30 NNNNNNNNNN .................................... AAGCAATCCAGAAACTCGGGATCGTTTCTT 2267439 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 25 36 30 GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-2.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [15-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [51,22] Score: 0/0.18 # # Final direction: R [0,0.78 Confidence: HIGH] >NC_013198 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2265923 36 94.4 30 TTCCAAGTAT --.................................. GAGGCATGTTAGACGTCATATTTGCTGAAA 2265989 36 97.2 30 TTTGCTGAAA C................................... TCTCGACAACAACCCGTTTTGGCACCACAA 2266055 36 100.0 30 GGCACCACAA .................................... TGAAATAATTGTTGACACGTGAGAACACAG 2266121 36 100.0 30 GAGAACACAG .................................... ACTGGCATCAATCATCATGAAGTATGCGAT 2266187 36 100.0 30 AGTATGCGAT .................................... TTAGTGGCAGAGAGGTAATGATGATCACAC 2266253 36 100.0 30 ATGATCACAC .................................... GCATATAGCTTGATATTGGCCGCAAGCTCG 2266319 36 100.0 30 CGCAAGCTCG .................................... TTTCTGTCGGGTTTGTGGAATGGCACTGTG 2266385 36 100.0 30 TGGCACTGTG .................................... GTCTAGCCCGAGAAGTTCCGCGGCTTTTTT 2266451 36 100.0 30 CGGCTTTTTT .................................... CATAAGGTGGCAGCGGCCATTTGTGTTTTT 2266517 36 100.0 30 TTGTGTTTTT .................................... TTTAAATGCGTATTTTCTTTTCTCAACTGT 2266583 36 100.0 30 TCTCAACTGT .................................... CGCAGTCTTGCAAGCCGTAATGCTCGATCT 2266649 36 100.0 30 TGCTCGATCT .................................... CCCATAGGCCTAGCTGTCGCCCGTAAGGCG 2266715 36 100.0 30 CCGTAAGGCG .................................... ACAGCCGTCTTGATCTTGTCAGCATCACCC 2266781 36 100.0 30 AGCATCACCC .................................... GGGGCTTCTGCAATCTGGAATGCCCTTGGA 2266847 36 100.0 30 TGCCCTTGGA .................................... TAGAATACTACCTTTTGGCACAATATTATT 2266913 36 100.0 30 CAATATTATT .................................... TCAATCGTCATGCCAAGCGGCATAGCACCT 2266979 36 100.0 30 CATAGCACCT .................................... TAGTGATCATATTCATGCAACACAAACGGT 2267045 36 97.2 30 CACAAACGGT ...............A.................... TTGACAAGTCAAAGTGCTCATACAAGTATG 2267111 36 100.0 30 TACAAGTATG .................................... TGAACTCATCGCTTACCGGCAACCAGTCAT 2267177 36 100.0 30 AACCAGTCAT .................................... GGTGGCATCACAGAAGCAACCGAAACAATC 2267243 36 100.0 30 CGAAACAATC .................................... AAGTGGTAAGGTCCCCAAAGATTCGATGAT 2267309 36 100.0 30 ATTCGATGAT .................................... AGCATCCTATATTTCCATGAATACTGATGA 2267375 36 100.0 30 ATACTGATGA .................................... AAGCAATCCAGAAACTCGGGATCGTTTCTT 2267441 36 100.0 ATCGTTTCTT .................................... CGGTGTTTTC ========== ====== ====== ====== ========== ==================================== 24 36 30 GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-2.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [119,20] Score: 0.18/0.18 # # Final direction: R [0.18,0.78 Confidence: MEDIUM] >NC_013205 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2945305 37 100.0 37 GGAGGGTAGC ..................................... CGGATGTACGCCAAGTTTGAGGAGAATGGTCGCGTGG 2945379 37 100.0 38 GGTCGCGTGG ..................................... ATGGCCCAAATGGTGTACGAAGCGGTGACCGGCTGGAT 2945454 37 100.0 35 CCGGCTGGAT ..................................... AATCCTCCAAGATCGTCGGCGCGTTCGGCAGCATG 2945526 37 100.0 35 CGGCAGCATG ..................................... CACAACATCATCCACAACCGCGACAGCGGGTTCAC 2945598 37 100.0 39 GCGGGTTCAC ..................................... GTGCCGCACTGGAATACGCCGATAAAATCACGACGCGGA 2945674 37 100.0 37 ACGACGCGGA ..................................... ATCCATGTCAAACATTCGCTTTGTTGTACCAATCACA 2945748 37 100.0 38 ACCAATCACA ..................................... ACTATGGTAGCGTGTTTCAGTCGGTGGCCGACCAGGCG 2945823 37 100.0 CGACCAGGCG ..................................... CGTTTCCGAC ========== ====== ====== ====== ========== ===================================== 8 37 37 GTTGATCCGCCGAGATCGTCGGCGGCCCCATTGAAGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-14.00,-13.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [31.7-33.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [598,531] Score: 0/0.18 # # Final direction: NA [0.37,0.37 Confidence: NA] >NC_013205 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2733235 37 100.0 36 TAGCGGAAAC ..................................... CATTGCAAGAATCACCCAATCGTTTTGAGCGCAAAT 2733308 37 100.0 35 GAGCGCAAAT ..................................... TCGGATCGAGATGCGCTTCGCGCGCGAAGGACCGC 2733380 37 100.0 34 GAAGGACCGC ..................................... ATGCACCGTCTCGAAACCTCGACGTTCACTCACC 2733451 37 100.0 TTCACTCACC ..................................... ATATCATCCGCCAGGAACGCGAACATATCATCCTG ========== ====== ====== ====== ========== ===================================== 4 37 35 GTTGTTCCGCCGAGATCGTCGGCGGCCCCATTGAAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-14.00,-13.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [38.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [375,164] Score: 0.18/0.18 # # Final direction: R [0.55,0.64 Confidence: LOW] >NC_013204 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 2311212 32 93.8 37 ACCCGAACAG -..............-................ CCCGCGCGTTCTCGAGCACGGAGTACACCGCGGTGCC 2311281 32 93.8 35 CCGCGGTGCC ......C...................A..... TCTACATCCGTTTCAACGAATCGCGTATATTCCTC 2311348 32 96.9 34 TATATTCCTC ..........................A..... CCCCGTGAATGCATAGGACGCCATGGCATCGTAG 2311414 32 96.9 39 GGCATCGTAG ..............................A. CTGGCCGAGGCCAACGACAAGGCCGTCAACGCCTACCTG 2311485 32 100.0 34 CGCCTACCTG ................................ CCGCCTACATGGGTTCGCGCCTTTTCCCCGACAT 2311551 32 96.9 34 TCCCCGACAT ...................G............ CCAGGTACTCGACGTTCTGGGTGATCGCGGTGGG 2311617 32 100.0 37 TCGCGGTGGG ................................ CGTTTGCAGCCTTGACGCTTTCGTTCACGTCAGTGCC 2311686 32 100.0 38 CGTCAGTGCC ................................ CTAACGGCATCACGGTCGGCACGCCGGTGCAGCTTTTC 2311756 32 100.0 34 GCAGCTTTTC ................................ CTTGAGCCAGCCGAGACCCTGCGAGAGGCTGCCA 2311822 32 100.0 34 GAGGCTGCCA ................................ CGGTTATCAAAATGCGTCTGTTCAAGTTCGTTTA 2311888 32 100.0 34 AGTTCGTTTA ................................ CCAGCTCGACGAACGCGACGAGCGAAAAGAGGCT 2311954 32 100.0 38 AAAAGAGGCT ................................ CTCGTGGGTGCGGTTGTAGCCGTCCAGCACGTCGGCAA 2312024 32 100.0 35 ACGTCGGCAA ................................ CACGGCCTCAGCTCCTCGGTACTGTAAACATAGTA 2312091 32 100.0 33 AAACATAGTA ................................ CGCGGCGCTGACTTTTCTTTGGGTCGTCAGCCC 2312156 32 100.0 34 TCGTCAGCCC ................................ CCCATCATGGGCGCTATCGTCGTGGTCGGCATCG 2312222 32 100.0 36 GTCGGCATCG ................................ CGCCGAGGTGGCTGCCGCGAGGAACGGCGACAACAA 2312290 32 100.0 35 GCGACAACAA ................................ CCGGCCACAGGGTATGCATGCATGAGAGCGTATCC 2312357 32 100.0 GAGCGTATCC ................................ CCGCAATATTA ========== ====== ====== ====== ========== ================================ 18 32 35 ATTTCAACCCGCACTCCCCATGCGGGGAGTGA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [7,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-10.00,-11.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [36.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [318,157] Score: 0.18/0.18 # # Final direction: R [0.55,1.05 Confidence: LOW] >NC_013205 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================================= ====== 2945967 39 97.4 34 TAAGCCAAAC ......................................A TTAGAACTGATCCTATAATCGGATCATTCCCTAA 2946040 39 100.0 33 CATTCCCTAA ....................................... AGGGGCCGCGCCAGCATAAGCGACGCAGCCCAA 2946112 39 100.0 33 CGCAGCCCAA ....................................... GCGAGCGTCACATTAATCAGCATATATGGATTC 2946184 39 97.4 ATATGGATTC .T..................................... TAGTGGGCTTGTTTCGGCACCGTCGACAGTAGCGGT ========== ====== ====== ====== ========== ======================================= 4 39 33 CCGTTGATCCGCCGAGATCGTCGGCGGCCCCATTGAAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-14.00,-13.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1260,168] Score: 0.18/0.18 # # Final direction: F [0.55,0.37 Confidence: LOW] >NC_013205 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 38911 37 100.0 37 NNNNNNNNNN ..................................... CGGGTCTTGGGGCGGGCGGTTCATGCGGTTTTATTAC 38985 37 100.0 34 NNNNNNNNNN ..................................... GCGCCATGAACACAACGGCGGTAGTTGGACCGAC 39056 37 100.0 37 NNNNNNNNNN ..................................... ACGTGCCCAGTGTGCGGATGTGAATACACTCATCATT 39130 37 100.0 36 NNNNNNNNNN ..................................... AAGATCGAGGCGGGCAAGCTCGCGGAGGAGGCGGAG 39203 37 100.0 38 NNNNNNNNNN ..................................... AACATCATATTAATCCAATTCGATTTATTGCGGAAGAG 39278 37 100.0 39 NNNNNNNNNN ..................................... AGATACGACAATAGGAGGCTGCTCCGGAACTTCAACGTT 39354 37 100.0 35 NNNNNNNNNN ..................................... GTATGTATCGGGGACGGGAGTAACCCTTCTCAAAT 39426 37 100.0 35 NNNNNNNNNN ..................................... TGGCGCTTGTGAGTTACTTAGAGAATAGCCATACA 39498 37 100.0 35 NNNNNNNNNN ..................................... CATCAGTTCCTTGACCCTCTCGTTTGCCACGTCGC 39570 37 100.0 37 NNNNNNNNNN ..................................... GTGAGTTCATGATGAACCACGTGTAGTGATCAATGGT 39644 37 100.0 38 NNNNNNNNNN ..................................... TCGTTTTTTCAGTCGTCGTTTGTCGGGGCGCTCGAAAA 39719 37 100.0 38 NNNNNNNNNN ..................................... GGCGCGAGGTCAGCGCGGAGCATGTCACGGACGCGCGG 39794 37 100.0 38 NNNNNNNNNN ..................C.................. TATAACCATTTGTGATACATCTGTCATAGAGGAACAAT 39869 37 100.0 37 NNNNNNNNNN ..................C.................. CCAAGGATCTGCGTCAGAACCACTCAATTCTGCCGGG 39943 37 100.0 38 NNNNNNNNNN ..................C.................. GTGCTCGGTCAGTGGGCACTGGAGTCAGGCTGGGGTAC 40018 37 100.0 36 NNNNNNNNNN G..G................................. AAAATTCGGCTTGATGTTTGCGACATAGCGATTCTC 40091 37 100.0 38 NNNNNNNNNN G..G................................. GAGAGCGCTTTTACGCCATCGAATACGAGCGGAGCAAC 40166 37 100.0 37 NNNNNNNNNN G..G..............C.................. CTGAGTATGATTTCAGCTCGATACGCATTCAGTAAAA 40240 37 100.0 36 NNNNNNNNNN ..................................... CCGGACGACCAATACGACCGCCTTTGCGTCGAGCTA 40313 37 100.0 35 NNNNNNNNNN ..................................... ACCGCCAGCCAGAAGATGCCCACCCAGTCGTATGG 40385 37 100.0 37 NNNNNNNNNN ..................................... ATGCTGACGATCAACACGGACATCCGGTGGCAGTGGC 40459 37 100.0 37 NNNNNNNNNN G..G................................. TTGGTGGCGGCCAAACTCGAAGGAAAGGAAGCGATGC 40533 37 100.0 1 NNNNNNNNNN G..G........................T......A. NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 23 37 36 CTTAATCCGCCGAGATCGTCGGCGGCCCCATTGAAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [7,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-14.00,-13.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [442,75] Score: 0.18/0.18 # # Final direction: F [0.96,0 Confidence: HIGH] >NC_013210 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 123524 29 100.0 32 TTCACGAAGA ............................. CGGTCGATATTAAGGCGGAAGAGGGGGAGGCC 123585 29 100.0 32 GGGGGAGGCC ............................. CCGAGGCAGATAGAGCTGTGGAATGTGTCATG 123646 29 100.0 32 ATGTGTCATG ............................. CACGCTCTCCGTGCCTCAAATCCATTGTGAGA 123707 29 100.0 32 CATTGTGAGA ............................. ATAGCGGCACCTGCGCCAAACCCCATTTTCAG 123768 29 100.0 32 CCATTTTCAG ............................. TTCAGCGTTTGGCCATCAGCAAAAACTACCGT 123829 29 100.0 32 AAACTACCGT ............................. CGGGGCGGCTGTTGGTAATGCAGACAATCCGT 123890 29 100.0 32 GACAATCCGT ............................. TCGCCCACGGCCTGCCAAGACTTGCTCACTTC 123951 29 100.0 32 TGCTCACTTC ............................. GCGGTGGATAGGCCTTCCATATCTGGCAGGTA 124012 29 100.0 32 CTGGCAGGTA ............................. CCCGCGTAGCATGTTTGCGCGTGCACCGCCTG 124073 29 100.0 32 GCACCGCCTG ............................. TCGGGCGTCTGGCCGGTCGCTGAGGCTCTCAA 124134 29 100.0 32 AGGCTCTCAA ............................. CCGCCTGACCGTCTGACCTCCTGACCGCCTGA 124195 29 100.0 32 GACCGCCTGA ............................. GCGTATCGGTCACAAATGCAGAACCGGCTGGC 124256 29 100.0 32 ACCGGCTGGC ............................. ACGCGCGCGGCGGGTAGTGTAAAGAACAGCGC 124317 29 100.0 32 AGAACAGCGC ............................. CCCCGACCGTTGGCAATATTACCATCACGCCT 124378 29 100.0 32 CATCACGCCT ............................. ATATTTGGACAGTTCGCCCCGGCTGGTAATGT 124439 29 100.0 32 CTGGTAATGT ............................. TCGCAGCGGAAATCATTGTTGGCAATAATGCC 124500 29 96.6 32 CAATAATGCC ............................A CGTGGCCCATGCATTCTTCTCTGGTGACGAAC 124561 29 100.0 32 GGTGACGAAC ............................. TAACAACAACCTAGCCGCCGTGGTAAATACCA 124622 29 100.0 32 GTAAATACCA ............................. CAGCACAAAGCCAGAGACCAGAAGGTTTATGC 124683 29 100.0 32 AGGTTTATGC ............................. ATCTTGGGTTTGTTGACTTCCGGCATCGTGAT 124744 29 100.0 32 GCATCGTGAT ............................. AACAGCCCCGCATACCGGCGCATATTGACGCA 124805 29 100.0 32 TATTGACGCA ............................. AATTGCCGGGTCTGGCCGCTACCTGCAAACTG 124866 29 100.0 32 CTGCAAACTG ............................. GCTAAAAATGGGTGATTCCAAAACCAAAACTA 124927 29 100.0 ACCAAAACTA ............................. ACGCCTAACA ========== ====== ====== ====== ========== ============================= 24 29 32 GTGTTCCCCGCACACGCGGGGATGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [76,15] Score: 0.18/0.18 # # Final direction: F [1.23,0 Confidence: HIGH] >NC_013205 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 65540 37 97.3 35 GGATGAACTT .......................T............. GAGAAGTCGAGGAGCAGTTTGCGCATCGGATTCGG 65612 37 100.0 36 TCGGATTCGG ..................................... CCAATGCTTACATGAGAGACACCACATGTAGTGCGC 65685 37 100.0 35 TGTAGTGCGC ..................................... TGCGGGTTCGCGCCGAGCGCCTTCAGCGTGGCGTT 65757 37 100.0 36 GCGTGGCGTT ..................................... CCCCGTGCCCGTCGTGTGGACAATGTTATCGCCCGC 65830 37 100.0 35 TATCGCCCGC ..................................... TGGGCATGTCCAAAGCATGTGACTGACGCGCCACG 65902 37 100.0 38 ACGCGCCACG ..................................... GTTGCACAGGCGGAGGTGTCCGCGCCCGAAGTGGCGTG 65977 37 100.0 38 AAGTGGCGTG ..................................... TGCCACCGCCGTCTGCGAATGGTCCGCACCAAGTCGTC 66052 37 100.0 34 CCAAGTCGTC ..................................... ATCGGTGCAGCATGCGGATCATCCTCGACGGCAA 66123 37 100.0 35 TCGACGGCAA ..................................... TCTACCATAAGCGCATATTGTGTAACATTTGATGT 66195 37 100.0 38 CATTTGATGT ..................................... GTCGGCATGTCACTGCACTCCCATTTCCGGCGGCGTAT 66270 37 100.0 37 GGCGGCGTAT ..................................... TACAGATTACAAGACTGTCGTGGATCTTCCAGTTGGT 66344 37 100.0 36 TCCAGTTGGT ..................................... GACCATTCCGATAAACCAAATGCCTATGGCTAGCCA 66417 37 100.0 38 TGGCTAGCCA ..................................... ACCCGCTGACCCAGGGCACGCCGATGTACCAGCGGATC 66492 37 100.0 38 CCAGCGGATC ..................................... TTAGGTTACGATAAATACAATAAACCGTTCAAAGAAAA 66567 37 100.0 36 TCAAAGAAAA ..................................... ATTGATACTGTAGCAACTTTAACACAACCTATCATT 66640 37 100.0 38 ACCTATCATT ..................................... ACTCGTGGTCGGTTGTGGTCTATCTCGGCTACGATGAG 66715 37 100.0 36 CTACGATGAG ..................................... AATCGTGATGTTGTTCGGCACATCGGGATTGAGGAA 66788 37 100.0 38 GATTGAGGAA ..................................... CCCCCTACTCGCATTAGGTCAACTCAACAGGCGCAATC 66863 37 100.0 AGGCGCAATC ..................................... GCTATCCTCC ========== ====== ====== ====== ========== ===================================== 19 37 36 GCTTCAATGGGGCCGCCGACGATCTCGGCGGATTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [7,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-13.10,-14.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [41.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [196,441] Score: 0.18/0.18 # # Final direction: R [0.27,0.96 Confidence: MEDIUM] >NC_013216 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2199475 30 100.0 35 GTTTATGATC .............................. CGCTGGCTACTGAGGAAGCGGGAGCGAAAGTAAGG 2199540 30 100.0 35 GAAAGTAAGG .............................. TATATCAGGTGTTTTTACTAATTTATTTGTAGCAA 2199605 30 100.0 37 TTTGTAGCAA .............................. CGGGTTCATTCACGAAATATATGGCCGAGCTTGGGCG 2199672 30 100.0 37 AGCTTGGGCG .............................. AACCTAACCGGTTGTGAACTGGCCAAAACTATTCCTA 2199739 30 100.0 37 ACTATTCCTA .............................. CGCAAGGGTGGCTTTATCGGTCTTTCAAGCACCGCAG 2199806 30 100.0 36 AGCACCGCAG .............................. TTGAGCTTCCGGCGTGTGCGTTCGATTTTTATGATT 2199872 30 100.0 35 TTTTATGATT .............................. TCACATTTGAGCCTAACGGCATTCCGGCAATTAAG 2199937 30 100.0 36 GGCAATTAAG .............................. TAGACTTAATAATTCCTTTTCTTGACTTTTCGCTTA 2200003 30 100.0 37 TTTTCGCTTA .............................. ATTGGTCGGGGCTTTTTTTTATTTTCTAATAAAAAAC 2200070 30 100.0 37 AATAAAAAAC .............................. CAGAGTTGGAAATTGAGGGAATGATAGAAGAAATTGA 2200137 30 100.0 37 AAGAAATTGA .............................. TCTATAAATGAAACAATACAAAAAGTTTCTAATGATA 2200204 30 100.0 37 TCTAATGATA .............................. TCTATAAATGAAACAATACAAAAAGTTTCTAATGATA 2200271 30 100.0 35 TCTAATGATA .............................. TTTAAATAATCAACATGCCCAACTTCATGTAATAA 2200336 30 100.0 36 CATGTAATAA .............................. TATTAAATATACTTTATTTAAGTTAGAACAAAAAGT 2200402 30 100.0 36 AACAAAAAGT .............................. ATATCTAAAAAGGTTAAAAAAGAAATTAAATGTATT 2200468 30 100.0 37 TAAATGTATT .............................. TACTAAAACGTGCTTCCCATCTTTTTATAATATTCAA 2200535 30 100.0 36 TAATATTCAA .............................. TAGATATAAACTTATAAACTTATAAATTTAAAAGGA 2200601 30 100.0 36 TTTAAAAGGA .............................. ATCTTCTTCTGAACAATGAATTTTTGATTGTGAAGC 2200667 30 100.0 36 ATTGTGAAGC .............................. TTTAAAACTTTAGCCACCAACCCCGGATCAAAAACA 2200733 30 100.0 37 ATCAAAAACA .............................. CTGGACATTGCTCGTCGTTACGAAAGGTTAAACAAAG 2200800 30 100.0 37 TTAAACAAAG .............................. TTTCATAGGTGGAACAATGGCTGTAAAAGTTAAAATC 2200867 30 100.0 36 AGTTAAAATC .............................. ATAATGACTATTGGAAGGACAAGATAGACCATCTAG 2200933 30 100.0 36 GACCATCTAG .............................. ACGGGATAAGCTACACAGATGCTCAGTCTATGGATA 2200999 30 100.0 37 TCTATGGATA .............................. TTACTGATCGCACATCTTTGTCATCTGTGTAATCAGG 2201066 30 100.0 38 TGTAATCAGG .............................. CATTATGAAAATGTTTTTCTGTCATTTCCTTTCCTCTA 2201134 30 100.0 36 CTTTCCTCTA .............................. AAAATAAAATAGGCTGGAAGTTAATCCAGCTCAAAC 2201200 30 100.0 35 CAGCTCAAAC .............................. TCTTCTCCCGGAGTTGCATCCAACGGCATTTCTAA 2201265 30 100.0 36 GCATTTCTAA .............................. CCGGAGAGAATTGACCGGACTATAACAGTTAAACTG 2201331 30 100.0 38 AGTTAAACTG .............................. GAAGACTGTTTGGCCAGGATTACGGGCTGCAACTCTAC 2201399 30 100.0 36 GCAACTCTAC .............................. TCTACGGTCTTTGCAGGTGTCCCGGTGGTAGCACTG 2201465 30 100.0 36 GGTAGCACTG .............................. TTTCATTTTCACTGTATTCTCTGATATAATCTGCAA 2201531 30 100.0 35 TAATCTGCAA .............................. ATGCCTGAAAGTTTTGTCAATCAGGGCACAAGTAG 2201596 30 100.0 37 GCACAAGTAG .............................. CCGACCTAAAGAATGGTGTAGTGGAACTTGTTATTGG 2201663 30 100.0 38 TTGTTATTGG .............................. AACCCTCAGACTTGTAGCAAATGCGACCGTACCTTTCG 2201731 30 100.0 35 GTACCTTTCG .............................. GGCTAATTGGCAGAATGGTTGTGCGGCCAGTAATA 2201796 30 100.0 35 GCCAGTAATA .............................. CATCATACGGTAAATATGTTTCCGAAATTAAGTGT 2201861 30 100.0 35 AATTAAGTGT .............................. CCTACGACATATATTCTCACCTTCTGCCCGGGCAG 2201926 30 100.0 36 GCCCGGGCAG .............................. CTTAGGGATGGTTCTTCAGGAACAATATTATTAACA 2201992 30 100.0 37 ATTATTAACA .............................. TTGTTTTTTTACCATCAGACATAATAATGCTTTCGTC 2202059 30 100.0 36 TGCTTTCGTC .............................. TTATGTTCAGCGTAGCAGCTATTGTATTGCCGATTA 2202125 30 100.0 38 TTGCCGATTA .............................. TCTTCCCGAGGAACTTGTACAGAGCACACCAAAATACC 2202193 30 100.0 36 CCAAAATACC .............................. TTTATCTCTTCGACTATCTTGTAAGCGTGAACTCCT 2202259 30 100.0 GTGAACTCCT .............................. CGGCTGCTTA ========== ====== ====== ====== ========== ============================== 43 30 36 GTTTTTAGCCTACCTATAAGGAATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.30,-1.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [934,239] Score: 0.18/0.18 # # Final direction: F [4.95,0.37 Confidence: HIGH] >NC_013216 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2198816 30 100.0 38 GTTTTAGTGG .............................. TATTTTCAGGAAACGGCACAAGAAATCACCTCACCTAA 2198884 30 100.0 35 CCTCACCTAA .............................. ACTGAACGGCGATATCGTTGGCAGCACTAGCGCCA 2198949 30 100.0 36 ACTAGCGCCA .............................. GCAGCTTCCGCTACTTCATCCGGCTCTGCATCTCTT 2199015 30 100.0 37 TGCATCTCTT .............................. TTGCCAATAATCTCAATATCGCCATCTTGCTGAGCCC 2199082 30 100.0 36 TGCTGAGCCC .............................. AAAGAAGTGTTGTCACGCTTTCTTAGTTCATCATAT 2199148 30 100.0 37 TTCATCATAT .............................. TTAGCTTTCATGCTATGGCCATTATATTTGCCAATAG 2199215 30 100.0 37 TTGCCAATAG .............................. TTTGGCGTAGTTACTGGTAGTCTTAAAAATGTAAATG 2199282 30 100.0 37 AATGTAAATG .............................. GATCGTATATTATTTAAATCTGCCGAGGTTAAAATTG 2199349 30 100.0 GTTAAAATTG .............................. TTGGTGCACT ========== ====== ====== ====== ========== ============================== 9 30 36 GTTTTTAGCCTACCTATAAGGAATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.30,-1.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [275,3149] Score: 0.18/0.18 # # Final direction: F [4.77,0.55 Confidence: HIGH] >NC_013216 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2203726 30 100.0 35 ACTTTATTTT .............................. AAAACATGCAAGTTAACATACATAAGGAAATAAAT 2203791 30 100.0 38 GGAAATAAAT .............................. CTTGACAGAACACTGCGGATTGACCAGATCCACAATTG 2203859 30 100.0 36 TCCACAATTG .............................. AGTTTTTCGGCAACCGGCACCGAAAGGTAGCTAACA 2203925 30 100.0 36 GTAGCTAACA .............................. TTTTTTCACAATATTACACCACGGAAAGGTGGTGAA 2203991 30 100.0 AGGTGGTGAA .............................. ACAGCTTCCA ========== ====== ====== ====== ========== ============================== 5 30 36 GTTTTTAGCCTACCTATAAGGAATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.30,-1.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [365,226] Score: 0/0.18 # # Final direction: F [4.77,0.37 Confidence: HIGH] >NC_013216 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3161590 37 97.3 38 GGATGAGGAG .............-....................... ATGAAGAGATGGATTTCATTAGACGGATAAATGGTTAT 3161665 37 100.0 38 AAATGGTTAT ..................................... CGTCAGCGAAGATTAAAGGCTCTTGGATTTTATGTCCA 3161740 37 100.0 39 TTTATGTCCA ..................................... GATTGTAAAAGCTAAAATTGTTACATATAAAACTATTGA 3161816 37 100.0 38 AAACTATTGA ..................................... TTTACTATCCGATCTTGAATATCAAGTAGCATTATGTA 3161891 37 100.0 37 GCATTATGTA ..................................... ATAGAGGTGAGGAACCGCCTAAATGAAGGCGGTTTTA 3161965 37 100.0 37 GGCGGTTTTA ..................................... ATAGAGGTGAGGAACCGCCTAAATGAAGGCGGTTTTA 3162039 37 100.0 GGCGGTTTTA ..................................... CCTGCCCGCT ========== ====== ====== ====== ========== ===================================== 7 37 37 GTTTCAATTCCCTATGGGAATTATTTTGTTTTCAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-6.60,-6.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [170,299] Score: 0/0.18 # # Final direction: R [0.27,4.91 Confidence: HIGH] >NC_013216 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2217925 30 100.0 36 TTTTAGTGGG .............................. ATTCGTCAAAGCGTGAACCGTCGGCCATTGTACCTT 2217991 30 100.0 38 ATTGTACCTT .............................. TTTCTTTTATGCTCATTGTATCATAATGATCATTGATA 2218059 30 100.0 37 ATCATTGATA .............................. CTAATTTCTCAGGATTCGCTTTCGGTGTAATCATCAC 2218126 30 100.0 37 TAATCATCAC .............................. ACTAATTTTGAATAAAGTTTTAATTTAAACTACTTTA 2218193 30 100.0 39 AACTACTTTA .............................. ATAGTGATATTAAGAGGTTGCGGGAGAAAAATTATAAAG 2218262 30 100.0 36 AATTATAAAG .............................. AAAAATTTCCGATTAACTTTAAGACTAATGTAAAAA 2218328 30 100.0 36 AATGTAAAAA .............................. GGTGGATTTTCTTTTCAGATAGAAGGGCTAATAATA 2218394 30 100.0 36 GCTAATAATA .............................. CTGGTTTTCCCGGGCGAACGGTGGCTTCTATTTTTG 2218460 30 100.0 35 TCTATTTTTG .............................. TCTTGCTAACTTGCATCCACTGATTGCCAGTAATC 2218525 30 100.0 36 GCCAGTAATC .............................. ATTTTTCCATCCTACTCTCATCCAAGAGAGTAGGAG 2218591 30 100.0 36 AGAGTAGGAG .............................. ACTGAATTAAGTAAGAGTGTTTTTAATTTAGGCAGA 2218657 30 100.0 37 TTTAGGCAGA .............................. ACCAGATGCGGCAGCACTACTATCAGGGACGGATAAG 2218724 30 100.0 37 GACGGATAAG .............................. TAAGCAAGTTTGTTCAACTCCTGCCGGAAGAAGTGCA 2218791 30 100.0 36 AAGAAGTGCA .............................. CCCCGGACTATGTAGCAGATATTATCCTTCTTGTGG 2218857 30 100.0 35 CTTCTTGTGG .............................. CCTTTAACATGCAATTCAAAGATTTGCCTTGCGTA 2218922 30 100.0 36 GCCTTGCGTA .............................. GTCTGACTGGTATTCAACGAAGCCATAACCGGGTAC 2218988 30 100.0 38 AACCGGGTAC .............................. CCTGATCCATACAGCTACACATCCTCCCTAATATTGAA 2219056 30 100.0 TAATATTGAA .............................. TCCCCTTTGTCACCACTCTTATAAATGCCAAGTATAC ========== ====== ====== ====== ========== ============================== 18 30 36 GTTTTTAGCCTACCTATGAGGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.80,-0.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [638,479] Score: 0/0.18 # # Final direction: F [5.14,0 Confidence: HIGH] >NC_013216 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================================== ====== 3171738 38 100.0 38 AGATACCGTA ...................................... TTGCATACTCAATAAACCGGGACCGTTGTCTGAGCAAG 3171814 38 100.0 36 TCTGAGCAAG ...................................... TATATAAGGCATAGTATTAGCAGCGTACTTTAAATC 3171888 38 97.4 35 ACTTTAAATC .....................................G TGATAAGGAATATTGATTAAGGAGGTAATTATTAA 3171961 38 100.0 TAATTATTAA ...................................... CTGCCCGCTA ========== ====== ====== ====== ========== ====================================== 4 38 36 GTTTCAATTCCCTACGGGAATTATTTTGTTTTCAGATA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.42%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-6.60,-6.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [58.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1030,128] Score: 0.18/0.18 # # Final direction: R [0.86,4.5 Confidence: HIGH] >NC_013216 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 3189932 30 100.0 36 GTTTTTATAT .............................. TGTCCTTGGGCGGTGGGTTGTGACTACGATAGTTAT 3189998 30 100.0 37 CGATAGTTAT .............................. GAAACGAAAAGCGGAAATGAAAAAGTTCTCGAAAAAA 3190065 30 96.7 37 CTCGAAAAAA .....................T........ GAAACGAAAAGCGGAAATGAAAAAGTTCTCGAAAAAA 3190132 30 96.7 36 CTCGAAAAAA .....................T........ CAGTGTACTTGAATGGCCTGCACCAAAGTTTGAGAT 3190198 30 100.0 35 AGTTTGAGAT .............................. TTGGACAACCGGCCATGCCGGAGATATAAACAGCT 3190263 30 100.0 36 ATAAACAGCT .............................. TTTTGGTGCTGCTAGGAGTTCCATAATTACAATGGT 3190329 30 100.0 36 TTACAATGGT .............................. ATTACTGTTAATTTTGAAGGCGATTTAGTTTTCTTC 3190395 30 100.0 34 AGTTTTCTTC .............................. TTACAAGCCAGCGCTGGTAGTCTAAACTATCAAT 3190459 30 100.0 35 AACTATCAAT .............................. GCCGGAAACTTGTCGGCAAAATTACGGCGTAAATC 3190524 30 100.0 36 GGCGTAAATC .............................. CCTTTAAAGCCTTGTGGTGCCTGTGTAGTTTTTCGA 3190590 30 100.0 35 AGTTTTTCGA .............................. ACGGACAGAATGTGCGAAGGGAGGTGAAAAAAGGT 3190655 30 100.0 36 GAAAAAAGGT .............................. AGATAATCGCAAAGTATGCGGTGATGCCAGTTAACT 3190721 30 100.0 36 CCAGTTAACT .............................. TCACTGACCTACAACCTTCTGTAACCCACCAACCAA 3190787 30 100.0 37 CACCAACCAA .............................. TTTTTTTACATCAATTATAACATTAATGAAGTTAATT 3190854 30 100.0 35 GAAGTTAATT .............................. CAGTCCGGTGTTAAGGAACAAATTTATTTTGTTGT 3190919 30 100.0 35 ATTTTGTTGT .............................. TTTTGATTATGAGGTGATAATATGCTTTCTATCTT 3190984 30 100.0 36 TTTCTATCTT .............................. ATGGCCAGGACCTCCGGAGCCGAACCGGAAAGAAAC 3191050 30 100.0 36 GGAAAGAAAC .............................. ACCAAGCACCATTGTAACAAACACAATAAGTGCCAT 3191116 30 100.0 36 TAAGTGCCAT .............................. TCACTGACCTACAACCTTCTGTAACCCACCAACAAG 3191182 30 100.0 36 CACCAACAAG .............................. GAAAAATATTTCGTTGGTGATTGTATTATGTTCGTA 3191248 30 100.0 36 TATGTTCGTA .............................. TTTTATTAAGCTTGTCTTGCTCACGCTTAATATCGG 3191314 30 100.0 36 TTAATATCGG .............................. TCGCATTTCCCACACATCAAAATATCCTCAGGACGT 3191380 30 100.0 36 CTCAGGACGT .............................. CCCTCATGTGCAATAGATTTCTAGAAAATTATATCA 3191446 30 100.0 35 AATTATATCA .............................. TTTTGTGGGTTTTTTCGCTGAATAGCCATGGCATA 3191511 30 100.0 36 CCATGGCATA .............................. CGTTCCTGTTTTCGCAACATATCAGACAAATTCTCT 3191577 30 100.0 37 CAAATTCTCT .............................. CTATAAACCTGGCACTAGGATAATCAAAACCAAAGAA 3191644 30 100.0 36 AACCAAAGAA .............................. GTCAGTCCCTGGGTATTGTCCTAACCGGTTCCTTTA 3191710 30 100.0 35 GGTTCCTTTA .............................. AATAAAGAAAGGCGTAGCTTCGAAGGTAGCTAGTT 3191775 30 100.0 36 GTAGCTAGTT .............................. TTTACTTCGGTATACTGGCATACTAAAAGTATACCA 3191841 30 100.0 36 AAGTATACCA .............................. TTTTAGCACTCATAGCTATTTTAATTCCTGTTGGCT 3191907 30 100.0 36 CCTGTTGGCT .............................. AATTTAGGAACAACTAAACCTAAATTATAAAACCTG 3191973 30 96.7 35 ATAAAACCTG .................T............ ACGTATATGGATGGTGGCAAAAGCGGAAAAAAAAG 3192038 30 100.0 35 GAAAAAAAAG .............................. AACAGAGGGCAGAGGTTACTGTTTGGGAGGTAAGT 3192103 30 100.0 36 GGAGGTAAGT .............................. TTGATAGGGGGGGTTATAAGTGTTAGCTTTAATTAC 3192169 30 100.0 36 CTTTAATTAC .............................. TTTCCGGAGTTCGTTTATTAGGTGTCTTATCAGCAA 3192235 30 100.0 36 TTATCAGCAA .............................. TCCTAAGCCTTATATTTAAAGGATTTTCAAGTCAAA 3192301 30 100.0 35 TCAAGTCAAA .............................. CAGCTTGTTGGCCAAACTGCACAGGATGTTATTGT 3192366 30 100.0 36 ATGTTATTGT .............................. CCCTTCAAATTCGGATTACAGGCAATATAATACAAA 3192432 30 100.0 35 ATAATACAAA .............................. ATAGAAGGTGAACAAATACCTTTAGATTGGTATTC 3192497 30 100.0 35 ATTGGTATTC .............................. CAACCTGGGCAGCAGCCTTGGCATCATGCTGATAT 3192562 30 100.0 36 ATGCTGATAT .............................. TTGCGCCTGTTAATGAAGCTCAGGCGATTGTTCCTT 3192628 30 100.0 36 ATTGTTCCTT .............................. TACCCTTCCTCATGCCAGCGTTCATAACGTGAAACT 3192694 30 100.0 37 ACGTGAAACT .............................. GTTTTTCATCCAACTGTTATGATGGTCAGTATTTCTT 3192761 30 100.0 36 AGTATTTCTT .............................. TCACTGACCTACAACCTTCTGTAACCCACCAAACAA 3192827 30 100.0 36 CACCAAACAA .............................. TGCTGGCGCAAAATAATACCCGGGAAGGTGATTTCA 3192893 30 100.0 34 GGTGATTTCA .............................. GAAATTAAAGCATATGTGGAGGCAGAGCTTAGGG 3192957 30 100.0 35 GAGCTTAGGG .............................. AACCAATTGACCAACGCAAAAAAATCAGAACTGCT 3193022 30 100.0 37 CAGAACTGCT .............................. GTGGATCTTTAAATATAACTACAGATGCTAATGAAAA 3193089 30 100.0 36 CTAATGAAAA .............................. TCAGGGACTTCATGTTACTAACCGACTGGAACCGTG 3193155 30 100.0 36 TGGAACCGTG .............................. AAAAAACAAAGGATGGTAAGTACCATCCTTAAGAGG 3193221 30 100.0 36 CCTTAAGAGG .............................. AACGCCAAAATTATCATATATTGGACAATCATTAAA 3193287 30 100.0 36 AATCATTAAA .............................. TACCATTTTAAAATTAACTATGTAAACTTTTCATTC 3193353 30 100.0 36 CTTTTCATTC .............................. ATTCGTAATATAAATAAATATGAGTGCTATTGTGTA 3193419 30 100.0 37 CTATTGTGTA .............................. ATAAGAATTTTCTCCTGTTCATCTGTCGGCAGAGCAT 3193486 30 100.0 35 GGCAGAGCAT .............................. TTAACAGCCTCAGACACTGTAATATTTAATGATTT 3193551 30 100.0 37 TTAATGATTT .............................. TTGATAACCTATTAACCAACTGGATAATATCTGTAAA 3193618 30 100.0 36 TATCTGTAAA .............................. GTACTTCTTAAACACCATATTACTACACACAAAGTG 3193684 30 100.0 36 ACACAAAGTG .............................. AGAGGGTTAGCAAGCAAATACAGGTATCATTATACC 3193750 30 100.0 37 TCATTATACC .............................. CTTTTAACTTTTACCTTTTTTACAATCTCTAACCAAC 3193817 30 100.0 36 TCTAACCAAC .............................. TATCCAGCATTCTTCATCTTGATCGTATTCAACTGA 3193883 30 100.0 37 ATTCAACTGA .............................. TTATCCAGCATTCTTCATCTTGATCGTATTCAACTGA 3193950 30 100.0 36 ATTCAACTGA .............................. TTTTTCTTTTCAAGCAAAAACTTTGCAGCCTCCAAT 3194016 30 100.0 36 AGCCTCCAAT .............................. ACAGAATGAAAGATTTTAGACTAAATATGGGTAAAT 3194082 30 100.0 35 ATGGGTAAAT .............................. TTTAATTAATACCCAAATATAAGGAGGTCATACAA 3194147 30 100.0 36 GGTCATACAA .............................. AAAAAAGAAAGCTCCCGGTTATGGAATTATACCTAA 3194213 30 100.0 35 TTATACCTAA .............................. GAAGTTGAAATTGGTAACATGAGTAACATTAATAA 3194278 30 100.0 35 ACATTAATAA .............................. CAGTATCGCGGGTCAAGATTACCGGAAGGTGCTAC 3194343 30 100.0 37 AAGGTGCTAC .............................. TTATTGTATTTATGCTTAATAACCGTACCCATAAAAG 3194410 30 100.0 37 CCCATAAAAG .............................. CTGATATTGAAACAATGCTTAAAAAGACATTATGCAA 3194477 30 100.0 37 CATTATGCAA .............................. CTAGAAATGTTCAAGAATTTTGCCGCAAGATTATGAC 3194544 30 100.0 37 AGATTATGAC .............................. TTATATATTTGATTGCTAATACTGGTATTAGAAGAGG 3194611 30 100.0 35 TTAGAAGAGG .............................. GATAATGAATAGAATATAATTATAATTGTTCACAC 3194676 30 100.0 35 TTGTTCACAC .............................. TAATATTTTCATTAGATTCCTTCTTATTGATTGTT 3194741 30 100.0 36 ATTGATTGTT .............................. AGAATCTGGAGAATTAATTAACGTAATGTATCAAGG 3194807 30 100.0 35 TGTATCAAGG .............................. GGCATGGCGCGGATGCCTGGGGTTGGAACCAACGC 3194872 30 100.0 36 GAACCAACGC .............................. CAGGGAAGCTTATATAATAAGTGTGTTTGGGTTGTG 3194938 30 100.0 36 TTGGGTTGTG .............................. TTGATAGTGCTGATATAAGTATTAGCCGCTACTTTA 3195004 30 100.0 36 CGCTACTTTA .............................. CCGGAAGAAACGCATTTTTTAAGGTATTTGAGGCAT 3195070 30 100.0 35 TTTGAGGCAT .............................. CCATAAGCCGGTGTAGTTAAAAAAGGAGGTGTTTT 3195135 30 100.0 37 GAGGTGTTTT .............................. GGGATGTCAGAAATGATTTTGAGCAACACATTAACCG 3195202 30 100.0 36 ACATTAACCG .............................. ATATTTCGTTAACGAACCCGTGCTAGCTAGAATAAC 3195268 30 100.0 36 CTAGAATAAC .............................. TACTCAGGCGGTGATGAACCGTTTAAATGCTATGGC 3195334 30 100.0 36 ATGCTATGGC .............................. CCTACCATATAGCAAAACAGAAGCTTACATTGACAC 3195400 30 100.0 36 ACATTGACAC .............................. TTGTTAGCGCATTCAGTACATAAGACAAAAATGCCA 3195466 30 100.0 36 AAAAATGCCA .............................. TTACGATTCGGAGGCTATTAAAGAGCAGTCAGTAAG 3195532 30 100.0 36 AGTCAGTAAG .............................. AATGCGGAACGGTAAAATATACACATTTCCATACAG 3195598 30 100.0 37 TTCCATACAG .............................. TCAAACCAATCGTAAAACCATTTATAATCATTAGGTA 3195665 30 100.0 37 TCATTAGGTA .............................. TTAATTTTAAAATTGGTAATTTAAGCATTACTTTCAA 3195732 30 100.0 37 TTACTTTCAA .............................. AGTACCCCTTATCGTAACTTTGTAACAATAAAGCTTA 3195799 30 100.0 37 ATAAAGCTTA .............................. TGCCATATAAATGTTCATTTCCTCCGGAACTACATTT 3195866 30 100.0 36 AACTACATTT .............................. AGAACACGGAAACGAGTTTTGAGGGAGGGGTTAAAA 3195932 30 100.0 35 GGGGTTAAAA .............................. GGCGTTATATAATGCCTGCTCCATGCGCTTATGGC 3195997 30 100.0 35 CGCTTATGGC .............................. AAACTTAAGGCTAAAGATGGATTGAAAGCGGAACT 3196062 30 100.0 36 AAGCGGAACT .............................. TATTCTGACTGGCACACCACTATCACAGGGGGTAGT 3196128 30 100.0 36 AGGGGGTAGT .............................. TTTCACCTTTACATATCTTTGAAATATAAGAATGAT 3196194 30 100.0 36 TAAGAATGAT .............................. TTTTTGGTATCTTAAAGGTAACTTCGCTGTACCTGA 3196260 30 100.0 36 CTGTACCTGA .............................. CTGCTATTCAATCGGGGTAGTTGCAGGGGAAATTGA 3196326 30 100.0 36 GGGAAATTGA .............................. TATCCTGCTTGGCTGCTGATATATTCACCTTTTGGA 3196392 30 100.0 36 ACCTTTTGGA .............................. CATCTAAATTGCTCATTTCCTTAACGACCCACCACT 3196458 30 100.0 36 ACCCACCACT .............................. GACTTAAGAGGATTTTTAATGTATCTTGGGAAGCCA 3196524 30 100.0 37 TGGGAAGCCA .............................. GCCCTGATTGTGGCGGTGGGCCTGGATATTTAGAGGG 3196591 30 100.0 36 ATTTAGAGGG .............................. TGTTGCCAGGCAGCAGTGCAGGCAGCTAGTCCTGAA 3196657 30 100.0 36 TAGTCCTGAA .............................. TCAGCAGCAGTCCAGAAAAGTATCTGGTAATACTCA 3196723 30 100.0 36 GTAATACTCA .............................. CGACATACAGAAAAGGTTTGTGGGATTGGTATACTT 3196789 30 100.0 36 TGGTATACTT .............................. TATACCATTTTGAGGAGGAGATACGATGCCTTTATT 3196855 30 100.0 36 TGCCTTTATT .............................. GGGGTTGCAGGAAATCAGGGTTTCCAGCCTAATACA 3196921 30 100.0 35 GCCTAATACA .............................. AGCAGGGAGGTAATTATAACAGCAAATCTAATTGG 3196986 30 100.0 36 ATCTAATTGG .............................. CATCGTCGGTAATGCGGTTATCCTCACCAATTTCCA 3197052 30 100.0 37 CCAATTTCCA .............................. CTCTCCCCGGCCGGTTACTTACTGTATATAGAAAAAC 3197119 30 100.0 36 ATAGAAAAAC .............................. TTCAAAATAGACCGTATCATGGATTACCGAAGGAAT 3197185 30 100.0 36 CCGAAGGAAT .............................. GTAGTCGTACATCATGTTTATGTTGCAGTAAGCTTT 3197251 30 100.0 37 AGTAAGCTTT .............................. TGTGCAGGGGCCTTTTTTAAATTCCATGACAGCGGGA 3197318 30 100.0 35 GACAGCGGGA .............................. CTTAAAGATATGGAATACAGAATTGAATATCAAAC 3197383 30 100.0 36 AATATCAAAC .............................. GAAATATCCACTTGATTTGTTATCTGAAGCTATTGA 3197449 30 100.0 36 AAGCTATTGA .............................. TTCACCGTCATCTTTGCGCGTGTCTTTCCAGCCGAT 3197515 30 100.0 36 TCCAGCCGAT .............................. TGATACCGACATGGTCGTTAGAAACTTGCTCCATCT 3197581 30 100.0 36 TGCTCCATCT .............................. TTCCGAGAATATTTTGCAGATACAGGCTGCCGGTGA 3197647 30 100.0 37 CTGCCGGTGA .............................. CCGAGAAGGTGCCTGCTGCATGGTGAGGTGGGCAGCA 3197714 30 100.0 36 GTGGGCAGCA .............................. GGGGCAGGGGCAACCTTATTCCCAGACGATCAGCTG 3197780 30 100.0 36 CGATCAGCTG .............................. GGTGTCGGATAAAGAATACTACGAAAAACGCAGAAT 3197846 30 100.0 36 AACGCAGAAT .............................. GGGTGACGGAGAAGCCGGAACAGCAATGATTAACGG 3197912 30 100.0 36 TGATTAACGG .............................. GGACTTGCCCCCGGTTACAGTAAAACTGCCGGACGG 3197978 30 100.0 36 TGCCGGACGG .............................. CTGAATTAATTGAGGCACTATACAATGCTTTTGTGT 3198044 30 100.0 37 GCTTTTGTGT .............................. ACTACCGCCGCAAGTGGCATAACGGTGCCCAACCTAA 3198111 30 100.0 36 CCCAACCTAA .............................. GAAACGTGAAATAACTGGTCTAATTGAGGTAAAGCC 3198177 30 100.0 36 AGGTAAAGCC .............................. GAGCTATCACGAGATAGTATACAAGCTTCGTATGGG 3198243 30 100.0 37 TTCGTATGGG .............................. CTCTAAAGTCAACACTTGAAGAAATGGCTTCAATTGT 3198310 30 100.0 37 CTTCAATTGT .............................. GGATACATATCTCCAGCCTCTTGCCAAATAGAATCCC 3198377 30 100.0 37 ATAGAATCCC .............................. GACCATCAAAGCATCCAGATCCTCCAATATTAAATAA 3198444 30 100.0 37 TATTAAATAA .............................. CAAATAGAAAAATATTCCCTTAGCAATGGGGATTGTA 3198511 30 100.0 36 GGGGATTGTA .............................. ACGAAACAATGGATTTAACTGGTGCAACTAATACGT 3198577 30 100.0 36 ACTAATACGT .............................. GGTTATTTTCCCACTGCAGACGGAAGCTGATCTGCT 3198643 30 100.0 35 CTGATCTGCT .............................. TAAAACACTCTGATGGGTAAATATAATCAAAAATA 3198708 30 100.0 35 ATCAAAAATA .............................. GAAATATTGGTCAGCGGTACGCTAACATGAACATT 3198773 30 100.0 37 CATGAACATT .............................. AAGGTGAAATTCAAGTCCTGGCTAATAACAATGCCGC 3198840 30 100.0 36 ACAATGCCGC .............................. GGGACTGTTTGTAGCGCATTTCGCCACTATATATCT 3198906 30 100.0 36 CTATATATCT .............................. CAAAACAGCTTTTTTAGCTAATTTTATATCTCCAAT 3198972 30 100.0 36 TATCTCCAAT .............................. TCACCATTTCGATACATTGTCCAAGCGCCCAAACCT 3199038 30 100.0 35 GCCCAAACCT .............................. GTGTTTGCAATACCGGTTAAAGCAACAACACAGGT 3199103 30 100.0 36 CAACACAGGT .............................. TCAGCCATTTATGGTTGCCCAATCTAAGTCAAGAAT 3199169 30 100.0 35 AGTCAAGAAT .............................. AAGGATATTATGCTTAATACAACCGTTTATTTAGA 3199234 30 100.0 35 TTTATTTAGA .............................. AAAACATAATGTACAAACAAGATTAACAGAAATGA 3199299 30 100.0 37 ACAGAAATGA .............................. TTATATTCGACGTTCAGTATTTAAATTCCTTCTTTTT 3199366 30 100.0 35 CCTTCTTTTT .............................. ACAATTATAAAGCACATTTGGGGAACAGATAAAAA 3199431 30 100.0 35 CAGATAAAAA .............................. GGAGAAAAGAATGGAGAAAAGAAAAAATATAGCAA 3199496 30 100.0 36 AATATAGCAA .............................. GAATTTAATACATATTTAATAGGAGGCTCACAATAA 3199562 30 100.0 37 CTCACAATAA .............................. GAGGAAGAAGAAAAAAGGATACTGAGACAGTTAGCAA 3199629 30 100.0 CAGTTAGCAA .............................. CAACGCAAAT ========== ====== ====== ====== ========== ============================== 148 30 35 ATTTCAATACATCAAATGTGACGGTTTCCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.00,-2.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [635,176] Score: 0.18/0.18 # # Final direction: R [0.18,5.28 Confidence: HIGH] >NC_013216 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 4451140 30 96.7 35 GGGTTACCTA .................G............ CGAGATAGAATTGGCTGAGGAGATAGATGAACTAA 4451205 30 96.7 38 GATGAACTAA .................G............ GTCCGGTGGGGGATTCGTTTTTCTTTACATAGTTTACG 4451273 30 96.7 38 ATAGTTTACG .................G............ TTCGCCTTTTAAGGTATTGGCTAGTGGGTGATCTGCAT 4451341 30 96.7 36 TGATCTGCAT .................G............ ATGAAAAGGTTAAGCAGTTTATGCAGTTTTTGGGAA 4451407 30 96.7 36 TTTTTGGGAA .................G............ TCGTGAAAAAGGATTGTTACCTACATCAGTTATCGA 4451473 30 96.7 37 CAGTTATCGA .................G............ CCACCTATTCCTGAATATATTCCACAACCTACCATTA 4451540 30 100.0 36 CCTACCATTA .............................. CTTTTTTAGCCCAGCACCTACGGGCAAAAAACTCAA 4451606 30 100.0 36 AAAAACTCAA .............................. GGTTGAAGCAGTTACTAATATTATCAAGCAGTTCAA 4451672 30 100.0 36 AGCAGTTCAA .............................. CACAATTAGACCAATTTGAGAAGGGACGGGATAGGA 4451738 30 100.0 35 CGGGATAGGA .............................. GCTGCTTGCGTAGTTTACTTACCCTGTCCTCTGTC 4451803 30 100.0 38 GTCCTCTGTC .............................. TACAAGAGCTAAAGCTCGTTTAATAGCTCGTACTGAGG 4451871 30 100.0 36 CGTACTGAGG .............................. GTATTTAGGCCAAAGCTTGCTTTTTACTAAATTAGC 4451937 30 100.0 35 CTAAATTAGC .............................. AAACTACTTCTTACTTTTTCTGGTGTGTTATCAGA 4452002 30 100.0 37 TGTTATCAGA .............................. TAAAGATTGATCACGATGGTGAAGCAATTATAAAGTT 4452069 30 100.0 38 TTATAAAGTT .............................. CGCACCGGACGGGAGTATGCGTGCTTATAGGGTGATTT 4452137 30 100.0 40 AGGGTGATTT .............................. GGATTTGGGCCTAATAGTGAAGGCACTTATGTTGTACCAT 4452207 30 100.0 37 GTTGTACCAT .............................. AAAGTTATCGGAATTCTTACCCCCGTATTTAATACAG 4452274 30 100.0 35 TTTAATACAG .............................. CGATAAAGCCCGTGAACGTGGAGAAGAAAAACCTA 4452339 30 100.0 37 GAAAAACCTA .............................. GGCGGAGGAGTGTATGTGAGAGTAACGGCCAATGAGT 4452406 30 100.0 GCCAATGAGT .............................. CCCACTAAAA ========== ====== ====== ====== ========== ============================== 20 30 36 ATTTCAATTCCTCATAGATAGGCTAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [60.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [201,184] Score: 0/0.18 # # Final direction: R [0,5.14 Confidence: HIGH] >NC_013216 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 3834648 32 100.0 35 TGTTTGCAAA ................................ TTGCCGTGAGTGGTCCAGGCGATGCACTGTTTTGG 3834715 32 100.0 34 ACTGTTTTGG ................................ TACATACATGCATGTATGTGGTATATTATATATA 3834781 32 100.0 34 ATTATATATA ................................ AGAAAAATTATTTACAAATGGCACTCGAAAGGGT 3834847 32 100.0 34 TCGAAAGGGT ................................ TTAATGTCTCCTAAGTGCTTCATGTTCGGAAAGT 3834913 32 100.0 34 TTCGGAAAGT ................................ CTGTGATTGATAGTGGCTTAATTGTTCTTTTGCC 3834979 32 100.0 34 TTCTTTTGCC ................................ GCGCAATACTGGGGAGTCGCCCAGCGTCGTAAAA 3835045 32 100.0 34 CGTCGTAAAA ................................ CCAATTCGGTTCTGTTGCTGACATAGCCGCAATC 3835111 32 100.0 35 AGCCGCAATC ................................ CTACCGCATTCGTTCCAACGTTTATTGTAGAGCCT 3835178 32 100.0 34 TGTAGAGCCT ................................ TTGTGCGGCTAGAAACAATAAGTCTCTAACCTTT 3835244 32 100.0 34 TCTAACCTTT ................................ TGTAGACATTATAAACTTCTCTATTCATACAGAT 3835310 32 100.0 34 TCATACAGAT ................................ GGAGGGGTTAAAGTGATTGTCTGCCAGCGTTTCT 3835376 32 100.0 34 CAGCGTTTCT ................................ CTGAATATCGCTCACATTATCCTCCTCCCTACTA 3835442 32 100.0 34 CTCCCTACTA ................................ CAGCCTAATCTCCCTGGCAGTGGTTTGTTCAAAG 3835508 32 100.0 34 TTGTTCAAAG ................................ CTTGACTAAGTCTTCGCTGTCCTCACCCAGATCT 3835574 32 100.0 34 ACCCAGATCT ................................ TCATTTTTGACTTCTATAAAATATCCACTGTCCA 3835640 32 100.0 34 CCACTGTCCA ................................ TTGGTTACTTTTCCTTCCCGGATGGCAGTCAAGG 3835706 32 100.0 33 GCAGTCAAGG ................................ GGCATACAAATGCACCAGGCGGTTCTCCGTATC 3835771 32 100.0 33 TCTCCGTATC ................................ CAAAGGAGATACAATGGCTAATTGACCAAAAGA 3835836 32 100.0 35 GACCAAAAGA ................................ TGATGCAAGCAAGTTAAGCGAAAAGGCAAGAAAAG 3835903 32 100.0 34 GCAAGAAAAG ................................ AGAAATAAAAATAGCTTGGAAGGCTGACTCGAAT 3835969 32 100.0 34 TGACTCGAAT ................................ AGTTTCAATCTTTGCAAGCGTACGCTCCCTAAAC 3836035 32 100.0 35 CTCCCTAAAC ................................ ACTCGAAAAGCTGATTTCTGGATGGCTCAAAAGCA 3836102 32 100.0 34 CTCAAAAGCA ................................ TTCTTTTGATGAATTTCTTTTAGCCGGTGGTTTT 3836168 32 100.0 33 CGGTGGTTTT ................................ TTCCTCCACCAATAATTCCTTCCAGTGCTTTTT 3836233 32 100.0 34 AGTGCTTTTT ................................ TGCCCAGGCTGTTGTAAGTATCTACATATACGCA 3836299 32 100.0 34 CATATACGCA ................................ TTCCGGCAATGGCTTTAATTCCTCAGTTAATTTT 3836365 32 100.0 34 AGTTAATTTT ................................ GTTCCAAAGGCGTTCGCAATGGATTGAGCTTCGG 3836431 32 100.0 TGAGCTTCGG ................................ AGCAAATACT ========== ====== ====== ====== ========== ================================ 28 32 34 ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [7,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-5.20,-5.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [369,170] Score: 0.18/0.18 # # Final direction: R [0.55,4.77 Confidence: HIGH] >NC_013216 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 3748348 30 100.0 37 GTTTTAGTGG .............................. ATGGTTCACGTACTTTTGGGTCCCTTTTCTCAAGTTC 3748415 30 100.0 37 TCTCAAGTTC .............................. CCAAGATTTATTCCTAACATTGATGCAGTAATAAAGC 3748482 30 100.0 37 GTAATAAAGC .............................. TCTTTGTCTTTAGGCTTTTCATCTTCATCGCCCCAGC 3748549 30 100.0 37 TCGCCCCAGC .............................. CACAATCGGCATGTTTAAAATGCTAAAAGCGCATACT 3748616 30 100.0 36 AGCGCATACT .............................. GCAATTGCACAGCATCGGTGGTAAGTTTTCCATCAA 3748682 30 100.0 37 TTTCCATCAA .............................. ATTGTTTCGAAGGTATTTATTGTGTCTTTATCAAAAC 3748749 30 100.0 38 TTATCAAAAC .............................. TTATATTCTAACCCTGATGAAACATCTTCATTTACTTT 3748817 30 100.0 37 CATTTACTTT .............................. CGGCTTTAGACTTCTTAGGTCTATTAGCTTCGTATAA 3748884 30 100.0 35 CTTCGTATAA .............................. TATCTTCAAACACATTACAATTGTTAGGCATACGA 3748949 30 100.0 37 AGGCATACGA .............................. TGATACCTGCAAGCGCTCCAGTAGTGACATCCTAAGC 3749016 30 100.0 38 CATCCTAAGC .............................. ACTAACCAATGAAAACAACTGTAGTTAATGTTAACTTC 3749084 30 100.0 36 TGTTAACTTC .............................. CCCGATCTTGTGGGCATGAAGAGGTCGTGTCTCTGG 3749150 30 100.0 36 GTGTCTCTGG .............................. ATGCTGAAAGCATTAACTAAAGTTATTTTCATTTAT 3749216 30 100.0 36 TTTCATTTAT .............................. GATAACTGGTTAGCTATCTCAGTAGCCAGTGCAGCC 3749282 30 100.0 36 CAGTGCAGCC .............................. CAGTGTCGGCTATCTCAGCAAGTTTATCTAATGTAG 3749348 30 100.0 35 TCTAATGTAG .............................. TCTTGCTGACCTAGCACACCGGCAAACTGCCAGGA 3749413 30 100.0 ACTGCCAGGA .............................. AGTATATATAGGGGGATAGTGTCACGTATGTTACGCAC ========== ====== ====== ====== ========== ============================== 17 30 36 GTTTTTAGTCTACCTATGAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.00,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [352,194] Score: 0/0.18 # # Final direction: F [5.14,0 Confidence: HIGH] >NC_013216 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 933526 30 100.0 37 CTTGAGGGGT .............................. GCACTTTTATATACACCTCTATGCCCCACTATTTCAA 933593 30 100.0 35 ACTATTTCAA .............................. TGGTTCCGTCAATATCTATTTGTAGAACATAGACG 933658 30 100.0 34 AACATAGACG .............................. CGTCCATAATGCTTTCAAGAGACTCGCGCATAGC 933722 30 100.0 36 CGCGCATAGC .............................. CCCGAACTGCTAAGTCCTGCAGCAACAGCAGATCAA 933788 30 100.0 36 AGCAGATCAA .............................. CCTATATTCCGGGGCCGATGTGGCAGCCTGCTGCGT 933854 30 100.0 36 CCTGCTGCGT .............................. GCGACTAATGCGTAACAATTCGGCAGCTTCGTCAGG 933920 30 100.0 36 CTTCGTCAGG .............................. AGTATTGACACTAATAACACGGTTCATGTCAGCGGC 933986 30 100.0 36 TGTCAGCGGC .............................. TTTTGCACCTCCTATATATACCCCGACAACTCGTAA 934052 30 100.0 38 CAACTCGTAA .............................. CCTAATTCTACGTATGATTCAACTGTTCCGACAACTGT 934120 30 100.0 36 CGACAACTGT .............................. ACTTCAGAGAATAAAGCACCTTTGGCGATTTGTTCA 934186 30 100.0 37 GATTTGTTCA .............................. GTATTTAGTGCAGCCTCTACCTGACTTAGCACGATAC 934253 30 100.0 37 AGCACGATAC .............................. AAGTATAATTGGAACGCTCTATACGAGGAATATAACT 934320 30 100.0 37 GAATATAACT .............................. CAAGTACCTCTCCTCGCGGGCTTCCCGGCCCGCTCGT 934387 30 100.0 36 GCCCGCTCGT .............................. TAAATATGGACGAAGGGCAAGGAGAACCGTCAAGCG 934453 30 100.0 37 CCGTCAAGCG .............................. TTCCAGGTCAGTGCGAAGCCACCAGCCATAAAACAGG 934520 30 100.0 35 ATAAAACAGG .............................. TGAGTATAAGGTCCGGAAATATATTTCATTACACA 934585 30 100.0 38 TCATTACACA .............................. GATACTTTTCTGGACTGCTGCTGAAAACCATAAAAAGT 934653 30 100.0 38 CATAAAAAGT .............................. GTAAGCATTGATGTGGGTTCGAGTCCTGCGCCCGGCGT 934721 30 100.0 37 CGCCCGGCGT .............................. TATTTAAATACTGATATTGAGGAGTTAGCGGGGCTGT 934788 30 100.0 37 GCGGGGCTGT .............................. ACCTTTGTAGGATTGCGTTTGCGGGAGGCAAGAGAGT 934855 30 100.0 35 GCAAGAGAGT .............................. TCCGGGGCTTTGGATAGCATGGTTGCTTTGGCCTA 934920 30 100.0 37 CTTTGGCCTA .............................. GAGTTATTGCAGCAGGTAAAGGTTGCTTGGGAGAAGA 934987 30 100.0 36 TGGGAGAAGA .............................. GTAACTGCAACCGTTGCGGAAATTCGTGCAATGGAT 935053 30 100.0 38 TGCAATGGAT .............................. GGGGTGGCGTCAGCTTCAGCTATCAGGACACTTAGCGT 935121 30 100.0 37 CACTTAGCGT .............................. TATGACATAAAAAGAAAATTACCGTAAGGAGGACTGT 935188 30 100.0 36 GGAGGACTGT .............................. CTAACAAAACGTTCCAGATAATCGCAAAGTATGCGG 935254 30 100.0 35 AAGTATGCGG .............................. TGCTACCCTACTTATGAAAATGGGAGTGCAGCCAA 935319 30 100.0 34 GTGCAGCCAA .............................. GATGGCGCTGTATGGAGTGCGGCGCCGGCGCATA 935383 30 100.0 35 CCGGCGCATA .............................. TATATCTACCAGGTGACCAAGGAGGAATGCCTAGA 935448 30 100.0 36 AATGCCTAGA .............................. AAAGTTCAGCGAACTTATGAGAAACCTCTAACCTGT 935514 30 100.0 36 TCTAACCTGT .............................. TATTTAACACCTCCCTCTATAATCTTTGATTTTCTC 935580 30 100.0 35 TGATTTTCTC .............................. CAGAGCAAGTGCTGCAGATACAGGCTGCCGGTGAT 935645 30 100.0 37 TGCCGGTGAT .............................. AAAATATATCTGTCATACATAGCGCCATTTTTAAACC 935712 30 100.0 35 TTTTTAAACC .............................. ACGCCGGACGAAATTGTATCAATAGTTACAGCTTA 935777 30 100.0 36 TTACAGCTTA .............................. GCTACTGACCCCGCTGTTATTGACGGAATTCAAGAA 935843 30 100.0 36 AATTCAAGAA .............................. TATGTCTCCTGATTGTAAATTATTAGTATAGTCATA 935909 30 100.0 36 TATAGTCATA .............................. TGGCCTGTTTTTCCGGTCAGAATCAGACCGTCAGCT 935975 30 100.0 36 ACCGTCAGCT .............................. GGTGGTTCGCGGCAAAGCTATAAAACGAATCATACC 936041 30 100.0 35 GAATCATACC .............................. TTCGTTTTAACCCGCTAGCAGGCTTTCTGCTGTTT 936106 30 100.0 36 TCTGCTGTTT .............................. AAGACAAACGCAGGCCGGTACTGGCCGCCAAGCGTC 936172 30 100.0 35 GCCAAGCGTC .............................. TTTTTTAAAGATGAACAAATGGTTATCATTGAGAT 936237 30 100.0 37 TCATTGAGAT .............................. GATTAGCTGTTTAACAATGGAACAGAGTTTAATTAGC 936304 30 100.0 36 TTTAATTAGC .............................. GACATCTTAATCTAAAAAACTGTATTTTTTAGCTGC 936370 30 100.0 38 TTTTAGCTGC .............................. TAACAGAGATCAAGAAGCGTGATTTGCTTTGTTATATT 936438 30 100.0 35 TTGTTATATT .............................. ATGATGAAAAACCTGATTTAATCAGGATTGTTGGA 936503 30 100.0 35 GATTGTTGGA .............................. GGATTTGCACTCCTGGGCTATGTGTGTGCGCTGGT 936568 30 100.0 36 GTGCGCTGGT .............................. TTTAATTCTTCTTGGGTAACCATTCCGCTTATGCCA 936634 30 100.0 35 GCTTATGCCA .............................. GCAATGACAGTTTGTTCCGTTAAGGAGGCATCAAT 936699 30 100.0 35 AGGCATCAAT .............................. GACAACGGCAAGTGGGAAGAAAAATACACTAGGCA 936764 30 100.0 36 ACACTAGGCA .............................. AATATTATGCCAGGAGTGCAGGAGGGGGACTGTCAA 936830 30 100.0 35 GGACTGTCAA .............................. TCGACAAATTTGATTTTAGCTATTATGGCGATAAC 936895 30 100.0 36 TGGCGATAAC .............................. AACAATATGCCAGTAAATTAATTAGATGCGAATACT 936961 30 100.0 36 TGCGAATACT .............................. AAGTTAGAACCAGAAGAGGTGGGTATAGCAGATGAA 937027 30 100.0 36 AGCAGATGAA .............................. CGAAAAACTGTTGTAATACGTCCTGGGTTTTTGTAC 937093 30 100.0 36 GTTTTTGTAC .............................. GTGCATGTTGAAGTTGTAGACAGTAATGAAAAATTT 937159 30 100.0 36 TGAAAAATTT .............................. ATGCATACCACATACATGATGTTGCATACGACCCTT 937225 30 100.0 35 TACGACCCTT .............................. ATGATACTTGAAGAGGGCATGGATTTTAAGCCTTT 937290 30 100.0 35 TTAAGCCTTT .............................. GGTGGTTCGCGGCAAAGGAATAAAAGCTGTCATAG 937355 30 100.0 38 GCTGTCATAG .............................. TCTTCCTTAACTGTCTTGATGTCATGACACCGCTTACA 937423 30 100.0 37 ACCGCTTACA .............................. GAGTGTTATGAGATCCTATGTGCTAGTATCTATTAAC 937490 30 100.0 36 ATCTATTAAC .............................. ACGGTTCATCAGGTAAGATAATCCGCTTTGATTTTC 937556 30 100.0 36 TTTGATTTTC .............................. GGGATAAGGTGTTTTTGACTTCAACGCTGCGGCCTC 937622 30 100.0 35 CTGCGGCCTC .............................. GGTTAATTGACACTAAAGGTCAGTTAATACGCCTT 937687 30 100.0 36 AATACGCCTT .............................. GGTCTAAGTTATTTGCAATTATTAACTATCGGGTGA 937753 30 100.0 36 TATCGGGTGA .............................. ACGCATTACGAGTGCGTGAAAAGTACTTTTTTAGCC 937819 30 100.0 37 TTTTTTAGCC .............................. TGAATTAGCTCGTATCTTTTCAATCGGTACTGGTATG 937886 30 100.0 36 TACTGGTATG .............................. ATCAGATGCGGTAAACAAGGTAATACCTAGTAGAAT 937952 30 100.0 CTAGTAGAAT .............................. TACCCACCTT ========== ====== ====== ====== ========== ============================== 68 30 36 GATCTAATTTAGCCATAGTGGAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.90,-0.90] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [858,161] Score: 0.18/0.18 # # Final direction: F [0.18,0 Confidence: MEDIUM] >NC_013216 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 940048 30 100.0 36 CCCTTATGAT .............................. AATTTGAGGCTGAATTTGCCGAAAAGAAGGCGCAAA 940114 30 100.0 36 AAGGCGCAAA .............................. ATGCTAGGTTTATAGGGTTTGCAATTTTAAACTCTG 940180 30 100.0 39 TTAAACTCTG .............................. TGCATATATTCGTTATCGTGAGCGTGGGGGTATGAAAAA 940249 30 100.0 35 GTATGAAAAA .............................. TACAGTGATATTATACATCTACGCCAGGATTATTA 940314 30 100.0 36 AGGATTATTA .............................. CAGATTTAACTTGTGGTACTGTTTTATTTATGGTTC 940380 30 100.0 35 TTTATGGTTC .............................. AAAGTAAAAATCGGCCCGGATAAAAAGCACTGGTG 940445 30 100.0 36 AGCACTGGTG .............................. GGCTGTGTAAATGCCTCGTCCGTTCTCTCGGAAACA 940511 30 100.0 35 CTCGGAAACA .............................. AACTCAGTCATTATTAGTCCGTTACTTCCGGTCAT 940576 30 100.0 35 TTCCGGTCAT .............................. TGAAGGAAAATGTCATAACATTCACGGTCACAGGT 940641 30 100.0 34 GGTCACAGGT .............................. ATAAGTCACATTCAGTTTGACAAACGAACTTAAG 940705 30 100.0 35 CGAACTTAAG .............................. TCGGCATAATGCTCTTTGACTACAACATGAATAAG 940770 30 100.0 36 CATGAATAAG .............................. TTTGCTGGCGTTGGTGTTTGACTGGAGCACTTGATA 940836 30 100.0 35 GCACTTGATA .............................. TCCACTGCCACGGTTGACTGAAAACCGTTACTGGC 940901 30 100.0 35 CGTTACTGGC .............................. AGTACTATTAAACGCATGATCAAATTGATGTGCAG 940966 30 100.0 TGATGTGCAG .............................. AATGATAACCA ========== ====== ====== ====== ========== ============================== 15 30 35 GATCTAATTTAGCCATAGTGGAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.90,-0.90] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [60.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [94,3486] Score: 0.18/0.18 # # Final direction: R [0,0.45 Confidence: MEDIUM] >NC_013216 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 941098 29 100.0 37 TTCAGCCATA ............................. TTAGCCTATCACATACAAATGGGGATTTTCAGCCATA 941164 29 100.0 37 TTCAGCCATA ............................. TTTGCACAGTCGGAAGGGATACTGGCTTAGAGGCCAG 941230 29 100.0 37 TAGAGGCCAG ............................. TGTTTTTAATGCTACCAATTGACCTAGCGTATCCTGG 941296 29 100.0 37 CGTATCCTGG ............................. TAAGAGTCAACCCTCTCACCAACACCTCAACCGGCAG 941362 29 100.0 36 CAACCGGCAG ............................. TTATAACACCAGAAAGGAGGCAGAAGGGGCAATAAC 941427 29 100.0 37 GGGCAATAAC ............................. TAATGATGAACTTCGCATTTTTTATCTTTTTCACATA 941493 29 100.0 37 TTTTCACATA ............................. TTTTAAAATCACTCCTTTTAATCTTTCATTTCCTCTA 941559 29 100.0 38 ATTTCCTCTA ............................. TATTACTCTCAATCATGTCATGGATTGCAAGCAGTAGA 941626 29 100.0 38 AAGCAGTAGA ............................. TTCAATTAAAATAACAACCCAATCGTCTTCTAATTCTC 941693 29 100.0 37 TCTAATTCTC ............................. TTTGCCGCTGCCAGTTCCTCAGGTCGCTCTCGAATGA 941759 29 100.0 37 TCTCGAATGA ............................. TACTATTTGGCTGTCGTTTTCAAAAATAACCTTCTCC 941825 29 100.0 36 AACCTTCTCC ............................. TTTAGCTTTTCTGATTTCACGAATTCTTGCACCAAT 941890 29 100.0 39 TTGCACCAAT ............................. TATAAAGATCGGGTCGATAATTTTTGGAGTCAATTTAAA 941958 29 100.0 37 TCAATTTAAA ............................. TCCAGCAGATCCACCCACACCCCAAGGCGTTGCATAG 942024 29 100.0 36 CGTTGCATAG ............................. TTATTTTTATAGACGAATTTCAGGACACTAGCGACG 942089 29 100.0 37 ACTAGCGACG ............................. TGTGGAAGTGATTAACCGAGCTCCCGAAGACATAAAA 942155 29 100.0 38 AGACATAAAA ............................. TATTATTGTGGGCCAATGTTGAGGACGCGATAAACTTG 942222 29 100.0 37 GATAAACTTG ............................. TGAAGGTGTTGTTACTGGTAGAATAGGGAGTTTATAT 942288 29 100.0 36 GAGTTTATAT ............................. TTGCGAGGCAGTTATCATACGTAATTATCTCGGCAA 942353 29 100.0 36 ATCTCGGCAA ............................. TTCTTCCAGCACTGTCTTGCGTGAGTGGCATGAATG 942418 29 100.0 37 GGCATGAATG ............................. TTAGTAACTAATTGTTCAATATCAACAGCTTCACTAA 942484 29 100.0 38 GCTTCACTAA ............................. TGTGCTTTTTGAAGTTGATCGCCCTTAAAGCCTGTAGC 942551 29 100.0 35 AGCCTGTAGC ............................. TGATCGCATTGTGCAGCATGCATTAATGAGATCAG 942615 29 100.0 37 ATGAGATCAG ............................. TGAATAGATTAAGCCCGATGCGCTGATCGTCACCATA 942681 29 100.0 35 CGTCACCATA ............................. TTATGCGGTGGCAGCGATCTTCGGCCTGGATCCTT 942745 29 100.0 37 CTGGATCCTT ............................. TGCGGTTTTTCAGTGCTGGTTACTCTGATTTTCCAGG 942811 29 100.0 38 ATTTTCCAGG ............................. TATGTTAAGGCGGTTTTTATCGTTGTATCATAATGACC 942878 29 100.0 37 CATAATGACC ............................. TCTTGAAGCGGAACGCCTTATGAACATGCCGGATGGT 942944 29 100.0 37 GCCGGATGGT ............................. TAGCATTTTTTCTCTTTCAATCTGCAGTCGGTCCGGG 943010 29 100.0 39 TCGGTCCGGG ............................. TGTAATTATTCAAACAGAAATTGAAAATAACATGGTAAC 943078 29 100.0 35 ACATGGTAAC ............................. TTACATGGTGCAATATGATACGGCGGTTATTGGGT 943142 29 100.0 37 GTTATTGGGT ............................. TTTTATTAGCTGAACGATTAAGACCGTAAATAGTTGT 943208 29 100.0 36 AAATAGTTGT ............................. TCCGTCTGCATCCGTAAGAGCTGTTTCACGTTTGTC 943273 29 100.0 36 CACGTTTGTC ............................. TTCTATTTGTATTGCGATGTCGGCGGGTCTACCAGG 943338 29 100.0 36 GTCTACCAGG ............................. TCCCCATATCTCTTTTTATATAATCCACCCCATATC 943403 29 100.0 36 ACCCCATATC ............................. TATCTTAAAGCCGTAGGCTTCTTGAATTCCGTTAGG 943468 29 100.0 36 TTCCGTTAGG ............................. TGTCAATTGACTGGGAAGCTCCTTGGGCTGTATTTA 943533 29 100.0 37 GCTGTATTTA ............................. GATATCCATTACCGCAAGTTACTCCGCTTATTCCGGT 943599 29 100.0 37 TTATTCCGGT ............................. GCCGGATCCAAGTCACCGGCATCCACCCGCAAATCAA 943665 29 100.0 36 CGCAAATCAA ............................. GCCTCCCAAGGGCAGCAGGGATAAACCGTTTCGCGA 943730 29 100.0 37 CGTTTCGCGA ............................. GCTTCTTTGGTGTAATAGTTTATCGGCATCACACCGG 943796 29 100.0 ATCACACCGG ............................. GTACATAAATC ========== ====== ====== ====== ========== ============================= 42 29 36 GATCTAATTTAGCCATAGTGGAATGTAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.97%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.90,-0.90] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [1144,657] Score: 0/0.18 # # Final direction: NA [0,0 Confidence: NA] >NC_013223 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1876921 37 94.6 55 CACCGGTGAC ..........A..........T............... ATGTTGGTGGTGGTTGAGACACGCCAGAGCCGTTGCTGACCGACTCGCCAACCGT 1877013 37 100.0 34 CGCCAACCGT ..................................... GATGGGAGCGGCCCACAAAATACGCAGTGATGAA 1877084 37 100.0 37 CAGTGATGAA ..................................... GTTTGCCCCGGCCCAAGGGGTCGCATCCGATGTGCCG 1877158 37 100.0 34 CGATGTGCCG ..................................... TCGTTAACTGGAGCACACCCGGCGGCTGGAACCA 1877229 37 100.0 34 GCTGGAACCA ..................................... CGGCGGCCCTGAACAGGGACCTGTCGTTCTTGTC 1877300 37 100.0 35 CGTTCTTGTC ..................................... TTGTCGCCGTCATTGGTCAGGGCGGTGAAATCGGT 1877372 37 100.0 35 TGAAATCGGT ..................................... CAGAGCAGCGGAACATGGTGGAACAGCGTGTAGAT 1877444 37 100.0 35 GCGTGTAGAT ..................................... TTCGTCAACTGGAGCACCCCCGGCGGCTGGAACCA 1877516 37 100.0 GCTGGAACCA ..................................... GCTTAGCCGA ========== ====== ====== ====== ========== ===================================== 9 37 37 GCTTCAATGGGGCCACACTTTGCAGTGTGGTTGAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [7,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.60,-11.40] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [40.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [100,179] Score: 0/0.18 # # Final direction: R [0,1.05 Confidence: HIGH] >NC_013235 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1364626 37 100.0 34 GTGGGGTAGG ..................................... TACTTTCACCGGCGTAAACCGACTAGGCATAGAA 1364697 37 100.0 36 AGGCATAGAA ..................................... GTCTATGAAACGACGCAGTCAGTTCTTTTGCCTCAG 1364770 37 100.0 35 TTTGCCTCAG ..................................... ATCTGCGACGGGTCCGCACCGACAACCATACCGAG 1364842 37 100.0 38 CCATACCGAG ..................................... GACCTCCTCATCGCTCGCTGAACTGTTGATTACCAGGA 1364917 37 100.0 35 ATTACCAGGA ..................................... CTGCGGGCTAGTTCACGGTAGTCGTCACGATCCAT 1364989 37 100.0 37 CACGATCCAT ..................................... GTTCCCGTCTTCGTCAACCAGACTGAAGATGCCATCG 1365063 37 100.0 36 GATGCCATCG ..................................... TAGACACGATTATTTCTCCACAGCATCAGCATGCAT 1365136 37 100.0 32 CAGCATGCAT ..................................... GAAGGAGGTTGGAACCTCACTTCTTGGGAGCG 1365205 37 100.0 31 CTTGGGAGCG ..................................... CCCTCAGCAGCCGAGCGGTGTCATGCCGGCC 1365273 37 100.0 36 CATGCCGGCC ..................................... TTTCGGTGGCAGGCTGGAAATAAGTCCAACAGTGCG 1365346 37 100.0 37 CAACAGTGCG ..................................... TTTCGTCGCTGACCGAGATATAGAACGTGTACGGCTC 1365420 37 97.3 40 TGTACGGCTC ..............A...................... CCAGACGGCAAAGAACAAGAACGCAAAGACGAAACCACCG 1365497 37 100.0 35 GAAACCACCG ..................................... TTTGCTACACCCTGCGCGCCACCAGATCCCCAGTT 1365569 37 100.0 44 ATCCCCAGTT ..................................... CTAGCAATCTTTGCATATATCTCGTTGCGCTGCGCACCAGTGTG 1365650 37 100.0 CACCAGTGTG ..................................... GCTCTGGGCC ========== ====== ====== ====== ========== ===================================== 15 37 36 GTCAGAAACCACGTCACGCCGTCAGGCGTATAGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [12,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [25.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [209,187] Score: 0/0.18 # # Final direction: F [0.78,0.64 Confidence: LOW] >NC_013235 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1333814 37 100.0 35 ATGGGGTAGG ..................................... ACCAAAGCACGTCGCCAACTTCTGCTAGTATACTC 1333886 37 100.0 34 TAGTATACTC ..................................... GTCGTCACCACGTTGCCACAGGGCAATCGAACCA 1333957 37 100.0 34 AATCGAACCA ..................................... CTTCATCGGTTCGCCTTTCTGTCTGTCAGGTCGA 1334028 37 100.0 43 GTCAGGTCGA ..................................... GTGAGCTTGGACATCCCTCGGATCGTCCCGCGTAGCTCCCGGA 1334108 37 100.0 38 AGCTCCCGGA ..................................... CGACTCTCGCGGTTGCCCTCGGCGTCGTATTTATCGCG 1334183 37 100.0 35 ATTTATCGCG ..................................... GGCTGCGCGAAAAGCTCGTCGCGCCAAGCAGTTTC 1334255 37 100.0 34 AAGCAGTTTC ..................................... GAACTGCTCGGCGGTGGCCGAGCGGGTCACCATG 1334326 37 100.0 31 GGTCACCATG ..................................... GCGTGCATGAGGGGTCAACCTTTACTTGAGG 1334394 37 100.0 35 TTACTTGAGG ..................................... GGACCCAGTAGGGACACTTGAGGGTGATGACTCGG 1334466 37 100.0 35 GATGACTCGG ..................................... AGCTTCGCGAGCCGTGGATCTTGGCGTTGGCCGTG 1334538 37 97.3 34 GTTGGCCGTG ...................................T. TACACGTCTCGGTGTGCTCGTTGTAGAACGAACT 1334609 37 100.0 39 AGAACGAACT ..................................... AACGCGGAGAATCCGTTTATGTACGGATCGCTCCGACAG 1334685 37 91.9 37 GCTCCGACAG ..................................--- GACGGCTCGTTGGGGACGCACGATCCATCGTCGAGCT 1334759 37 100.0 39 TCGTCGAGCT ..................................... TTGGTCTCGTCGATGCCTTGCTGCAAATGTTGTGCGAGA 1334835 37 100.0 37 TTGTGCGAGA ..................................... TAGATCGCCGCCTGCGGAGCGAAGGACAGACTCAGGC 1334909 37 100.0 37 AGACTCAGGC ..................................... TAGATCGCCGCCTGCGGAGCGAAGGACAGACTCAGGC 1334983 37 100.0 31 AGACTCAGGC ..................................... CGCTTGCAGGCAGCTGCTTGACGATGTTGTC 1335051 37 100.0 33 CGATGTTGTC ..................................... ATGCATAGTCCTGCCTTTGCGATGAAGCCGAAA 1335121 37 100.0 36 GAAGCCGAAA ..................................... GTTGAGCACGGCCGCGAGGCTGGTGCGCTGCGATCC 1335194 37 100.0 36 GCTGCGATCC ..................................... TGCAGCGGGCACACAATTCGATTGGAATTCCCGCGA 1335267 37 100.0 38 ATTCCCGCGA ..................................... TCACGTAAGCTCACTCGTAAGTGAACTAGTAGGTCACC 1335342 37 100.0 37 GTAGGTCACC ..................................... CGATTGGGCGGGAAAGAGCCGCCACTTGAGCCAGCGC 1335416 37 97.3 35 GAGCCAGCGC ...........................A......... GTGTGTCACACGATCACATCCTTTTGTTGTCAAAG 1335488 37 97.3 35 GTTGTCAAAG .......................T............. TGGATGCCCTGGTCGGTCCGGAGAAAGCTCTTCTC 1335560 37 94.6 32 AGCTCTTCTC .A.........T......................... TCCTCACATCACTTGCACTTCCATGCTCACCA 1335629 37 100.0 39 ATGCTCACCA ..................................... GTGCCGACCGAGTTGCCTGATGCCTCGTTGTTAGGTAGA 1335705 37 89.2 39 GTTAGGTAGA ......................C...........--- GACATGATGGCACTACTGTCGCCGGTAAACATGCTGATG 1335781 37 94.6 37 CATGCTGATG ...........T........................T ACTAAGGCGTCGACGGGCTGGGCGGTGAGCGCGTGCA 1335855 37 91.9 37 AGCGCGTGCA .........G.A.......................G. GGCGCCTGGCGGGCCATAATCCGGAACGCGTCTTGCG 1335929 37 97.3 40 GCGTCTTGCG .........................C........... TTGTTCAGGACGACCTTGATGGCCTCCACGACCGGGTGAC 1336006 37 100.0 ACCGGGTGAC ..................................... CCTGTGCAGC ========== ====== ====== ====== ========== ===================================== 31 37 36 GTTGCATTCCACGTCACGCCGTTGGGCGTATAGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [8,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-8.20,-8.30] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [31.7-31.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [207,208] Score: 0/0.18 # # Final direction: F [0.41,0.37 Confidence: LOW] >NC_013235 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3336329 29 96.6 32 CCTCAAGCCA .....................A....... GAGTACTGGTGCGACGGGGTGAAGTGGGTTCC 3336390 29 100.0 32 AGTGGGTTCC ............................. CCTCGGGCAGCTCAGCGGGCACGACGACGAAG 3336451 29 100.0 32 GACGACGAAG ............................. GAGGACAGGCGGACGCACGCCTCGGAGAACCC 3336512 29 100.0 32 CGGAGAACCC ............................. TACACGAGGTTGTTCACCTACCAGTCGCGGCA 3336573 29 100.0 AGTCGCGGCA ............................. CTTGCTGCGT ========== ====== ====== ====== ========== ============================= 5 29 32 GGGCTCATCCCCGCGGGCGCGGGGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [3,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [28.3-26.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [490,2001] Score: 0.18/0.18 # # Final direction: R [0.37,0.59 Confidence: LOW] >NC_013235 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3336816 28 100.0 33 CGTGAACTCG ............................ GGCGGCGTTCGAATCGGAACGGATCGGCGATGG 3336877 28 100.0 33 TCGGCGATGG ............................ CAACCTGATCGAGAAGAACCTGTTTAGGGAAAC 3336938 28 100.0 46 TTAGGGAAAC ............................ CACCCGGGCCGCCTCGGCGTCCGATGCGCCGTGCAGCAGCAGCTCG 3337012 28 100.0 33 CAGCAGCTCG ............................ GCCAGCAGATTGCACGCGCGGGTTGTCGGTTCG 3337073 28 100.0 33 TGTCGGTTCG ............................ AACCTCGGCACCAGTCCGGTCACCATCCAGGAG 3337134 28 96.4 33 CATCCAGGAG ...........A................ CTGTGCGCCCGCACCGCCGCCGTGCTGTTCGGG 3337195 28 100.0 33 GCTGTTCGGG ............................ CTATCTGGGTCTTCGTGGACTCCAGGGAGGCGG 3337256 28 100.0 33 AGGGAGGCGG ............................ ATCGCCAAGGAAGAGCCAGCCAGCCAAGACGAG 3337317 28 100.0 CCAAGACGAG ............................ GCCGACGCGG ========== ====== ====== ====== ========== ============================ 9 28 34 GGCTCATCCCCGCGGGCGCGGGGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [3,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [28.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [977,1258] Score: 0/0.18 # # Final direction: F [1.05,0 Confidence: HIGH] >NC_013235 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3337499 28 96.4 33 TACGGACGTG .............A.............. GACGGCACCGCCGGTGAGCGCACCCAGGAACCG 3337560 28 92.9 33 CCAGGAACCG .............A...A.......... AACCCGCGGGCGTGTGCGGCCCACGAGTTCAGG 3337621 28 100.0 33 CGAGTTCAGG ............................ ACCCTCCAGGAGCGGGGGCGTGCGTGTGGCGCG 3337682 28 100.0 33 GTGTGGCGCG ............................ GAGTCATGTACCCAGTTGACCGGCCTGCGGCCG 3337743 28 100.0 33 CCTGCGGCCG ............................ ACGAACGAGGAGTCGACGAGCCAGTTCTGAGTA 3337804 28 96.4 34 GTTCTGAGTA ................T........... ATGGGTGGGCTCGAATGCCGACCTGATCCGACAC 3337866 28 100.0 33 GATCCGACAC ............................ CTGTTCGTCGGTCAGTCGCGTGGCTTCGGCTCG 3337927 28 100.0 CTTCGGCTCG ............................ GGTCGAGGCT ========== ====== ====== ====== ========== ============================ 8 28 33 GGCTCATCCCCGCGGGCGCGGGGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [3,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [18.3-18.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1660,648] Score: 0.18/0.18 # # Final direction: F [0.55,0.41 Confidence: LOW] >NC_013235 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3338172 29 96.6 32 CCGCGGACGC -............................ TTCTCGCTGTCCTGGCCCATGAGCCCGGACTC 3338233 29 100.0 32 GCCCGGACTC ............................. GCGGTCAGGTAGACGCCGGGCTTGACGATCAC 3338294 29 100.0 32 TGACGATCAC ............................. TCTTGGCCGATCAGGTCACCGCTCTGCTCGCC 3338355 29 100.0 32 TCTGCTCGCC ............................. CGGACGAGTTGCACGACCAGGTGCACATGATC 3338416 29 100.0 32 GCACATGATC ............................. GCGCTGTTCGTCGCGGCGTGCTTGCCGGCGAT 3338477 29 100.0 TGCCGGCGAT ............................. TAACTGCCGT ========== ====== ====== ====== ========== ============================= 6 29 32 GGGCTCATCCCCGCGGGCGCGGGGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [3,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [25.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2333,97] Score: 0.18/0.18 # # Final direction: R [0.55,0.68 Confidence: LOW] >NC_013235 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3344754 28 100.0 33 TGTCCGATCG ............................ GCCGCGTTGAGGTCCCCAATCGCGGGTGCCGCG 3344815 28 100.0 33 GGGTGCCGCG ............................ GTAGCTACGTCGGCACGGCCATCCCGGCCACGA 3344876 28 100.0 33 CCGGCCACGA ............................ ATGCGCGAGTTCGGCGGCACCATTACCGCCGAG 3344937 28 100.0 33 TACCGCCGAG ............................ GCTGTCGTCCACCACATCTCGACCCGGTGCCGG 3344998 28 100.0 33 CCGGTGCCGG ............................ ACGGCTTTCGACCGGATCGGCGGGTCGGAGCCG 3345059 28 100.0 33 GTCGGAGCCG ............................ TCACCCAGCGAGCGGATCTGCCCGGCCTGCACG 3345120 28 100.0 33 GGCCTGCACG ............................ GACCACACCCCCATCGCTAGCCTCAATGCGCCG 3345181 28 100.0 33 CAATGCGCCG ............................ CCCCACCCCTTGCTGGCGGCGGTCAAGCCGTAG 3345242 28 100.0 33 CAAGCCGTAG ............................ CCCGAGATTGTGCCCGTGGCGTACTCGGCAGGG 3345303 28 100.0 33 CTCGGCAGGG ............................ CCCGTTTCCGCAGATCGGAGCCGGTCCGCGCGG 3345364 28 100.0 33 GTCCGCGCGG ............................ GACGTTGCGGCACGGCAGCGAGCACGGGCACGG 3345425 28 100.0 33 ACGGGCACGG ............................ CGGAGCGGGAACGGCATGCCCTCGCTGGCTACG 3345486 28 100.0 33 GCTGGCTACG ............................ TCGCCCAACCGTCCGACGGTTCACCTTTCGCGG 3345547 28 96.4 33 CCTTTCGCGG ..........................T. CGTCGCAGCGACCACGACGACACCGAGATGCGG 3345608 28 100.0 34 CGAGATGCGG ............................ TGCCGCCTGACGCGCCTCTCTCGCCTTCGACCGG 3345670 28 100.0 33 CTTCGACCGG ............................ TACTGCACCGATAGCAACGACTACCCACTGGCG 3345731 28 100.0 CCCACTGGCG ............................ CTCTGGCCCT ========== ====== ====== ====== ========== ============================ 17 28 33 GGCTCATCCCCGCGGGCGCGGGGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [3,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [31.7-31.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [699,196] Score: 0.18/0.18 # # Final direction: F [0.96,0 Confidence: HIGH] >NC_013315 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1294727 29 100.0 37 TTATTTTGGG ............................. TCTCCATCTCCAATTAACATAAATAATTCATCCGCTG 1294793 29 100.0 38 TCATCCGCTG ............................. CCGCTTGGCAAATCATAAGAAGGATTATTTTCTCCAAC 1294860 29 100.0 35 TTTCTCCAAC ............................. AAAATAAAAGAGTTTGAATTACCCATTTTTTCATG 1294924 29 100.0 39 TTTTTTCATG ............................. TACGACATTGAATAAAATGGGTACAGAGACAATTTATAA 1294992 29 100.0 37 CAATTTATAA ............................. TTTATAAATCTTTTAATGACTGTCTCTGATGGTACAG 1295058 29 100.0 39 GATGGTACAG ............................. AAAGGAATAGATGATATGATTGCTAATGCTGAACAACAA 1295126 29 100.0 34 TGAACAACAA ............................. GGGTCTGACTTTAATATATATATATATATAAATT 1295189 29 100.0 37 TATATAAATT ............................. TTATAAACTCCCACGACAAAATTAACTATAACCTCGT 1295255 29 100.0 37 ATAACCTCGT ............................. AGTTTTAAAGAGGGCAGACCTAAAAAATATACTAAAA 1295321 29 100.0 37 TATACTAAAA ............................. GCAGAAGATTTAGCGACTGTTGTTGCTGAATGGGATG 1295387 29 100.0 37 GAATGGGATG ............................. ATTAAATTGCTCAGTCTAGTACTTAAAGAATTATAAG 1295453 29 100.0 38 GAATTATAAG ............................. TTGCTATGATTTAATTATACGACGTTTTGTCTTTAAAG 1295520 29 100.0 37 GTCTTTAAAG ............................. TGCTGTGCCACAATTTGATGCTTCTATAGCTAAATTC 1295586 29 100.0 37 AGCTAAATTC ............................. CTTTTAAGTGCATCAAAGGAGTTACAAGCTATATTTA 1295652 29 100.0 GCTATATTTA ............................. ACAGATCTAA ========== ====== ====== ====== ========== ============================= 15 29 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.86%AT] # Reference repeat match suggestion: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [909,1619] Score: 0/0.18 # # Final direction: F [0.5,0 Confidence: MEDIUM] >NC_013235 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 3348443 24 100.0 38 NNNNNNNNNN ........................ GAGCACGCATAGAGGGACTCCAGCCCAAGCTCAATGTT 3348505 24 100.0 37 NNNNNNNNNN ........................ AGCACTGACCCATGATCGCGGCCAACAGATCAGCCAA 3348566 24 100.0 37 NNNNNNNNNN ........................ AGCACGTCGTGACCCTCACCGGCCCTGAAAACGCGGC 3348627 24 100.0 37 NNNNNNNNNN C....................... AGCACTTCAACTCGATCAGCGACAGTGACCATGGCGC 3348688 24 100.0 37 NNNNNNNNNN ........................ AGCACTGCACGCCTTGCGCTTCGTACGTGGTGCGGAC 3348749 24 100.0 37 NNNNNNNNNN ........................ AGCACCGCAGGCGTTCGACGTGGACATGTCCAGGTCG 3348810 24 100.0 37 NNNNNNNNNN ........................ AGCACGAACGTGGCGAGGACACGGGCGCGGCGGGTGG 3348871 24 100.0 37 NNNNNNNNNN T....................... AGCACATGGCCAGGCTGCTTCGGCGACGAACCTTGTG 3348932 24 100.0 40 NNNNNNNNNN A....................... AGCACCTGACCCTCCAGGAGCGGGCGCGTGCGTGTGGCGC 3348996 24 100.0 37 NNNNNNNNNN ........................ AGCACATGGTCACCGGTGATGCTCACCGCGCCGAGTC 3349057 24 100.0 37 NNNNNNNNNN ........................ AGCACGCCGATGGCCATGGTCAGGTCCTTGGTGGCCT 3349118 24 100.0 37 NNNNNNNNNN ........................ AGCACTCCATCGCGTCCGCCTCGAACCCGATGATCTG 3349179 24 100.0 37 NNNNNNNNNN ........................ AGCACTCCATCGCGTCCGCCTCGAACCCGATGATCTG 3349240 24 100.0 37 NNNNNNNNNN ........................ AGCACGCGGCGGTCTGGACGACGGCGTTGCGCTCGGG 3349301 24 100.0 37 NNNNNNNNNN ........................ AGCACCAGGTGTCGTACTTTCCGACACCTGAGAGATC 3349362 24 100.0 37 NNNNNNNNNN ........................ AGCACCGAAACTGCCTGGCCGCACTGGCGCCTGGGTG 3349423 24 100.0 37 NNNNNNNNNN ........................ AGCACAGGGACGACACCGTTGCCGAGGGCCTTGAGCT 3349484 24 100.0 37 NNNNNNNNNN ........................ AGCACTCGTCCACCTGGACGGCCGAGCAGTGCGAACG 3349545 24 100.0 37 NNNNNNNNNN ........................ AGCACTGGCCCTGCCGCAGGTGAGCCAGGTAGCCGCC 3349606 24 100.0 37 NNNNNNNNNN ....................C... AGCACCGCCGTGCCCGCTTCACGGCCTGCTTCGTCGC 3349667 24 100.0 38 NNNNNNNNNN C....................... AGCACCCAGGCACACGATGCGACGGCCCCGGTCGTCCA 3349729 24 100.0 37 NNNNNNNNNN ........................ AGCACGCCCGAGTACGAGTTCCATCACCGCCAGAAGC 3349790 24 100.0 37 NNNNNNNNNN ........................ AGCACTGTTGTCGCCATGGATCCGAAATCGATCGAGC 3349851 24 100.0 37 NNNNNNNNNN T....................... AGCACTGGGTGGTCACGATGAACGCCGTCATCGTGGC 3349912 24 100.0 37 NNNNNNNNNN ........................ AGCACGAACTCAGCCTGGGTCAGGTGACGGGCGCGGA 3349973 24 100.0 37 NNNNNNNNNN ........................ AGCACTCCCGGACGAGTGCTGGACGTGGCAGGGCGCG 3350034 24 100.0 37 NNNNNNNNNN ........................ AGCACGACACCGGGGACGACTACCTGATCGGGGCGCC 3350095 24 100.0 37 NNNNNNNNNN ........................ AGCACTCCCCACCGGTGGGTGCATCTCGCCTCGCCGG 3350156 24 100.0 37 NNNNNNNNNN ........................ AGCACCTTTCGTAAGCATCGCGCGCGAGCCAGCAGGG 3350217 24 100.0 37 NNNNNNNNNN A....................... AGCACGTGTCGCTGGCGTTCCACAAGACCGCGCTGGC 3350278 24 100.0 37 NNNNNNNNNN ........................ AGCACGGAGGGCGAGACGATCCGTGTCGAGGTCACCG 3350339 24 100.0 37 NNNNNNNNNN ........................ AGCACTCGTACAGGTCCGACCACGGATCGATGTCCAG 3350400 24 100.0 37 NNNNNNNNNN ........................ AGCACCTATCTTGCGCTTTGGCGCAACTTCGCCAACT 3350461 24 100.0 37 NNNNNNNNNN ........................ AGCACCGCCGAGCAGCAAAGCGCAAGCGCTGCAGGTC 3350522 24 100.0 37 NNNNNNNNNN ........................ AGCACTGAATGACGCTTTCGACGCGTTGATCCCCCTC 3350583 24 100.0 37 NNNNNNNNNN A....................... AGCACGCCGACATCGCCCGGGCCGCCGCCGACCTGGT 3350644 24 100.0 37 NNNNNNNNNN ........................ AGCACCCTTCCGGGCCACCTTGAGCGACGGGGACGCG 3350705 24 100.0 37 NNNNNNNNNN ........................ AGCACTACTCCTTCAACCCGTTCGGCCGGTCGCCGCT 3350766 24 100.0 37 NNNNNNNNNN ........................ AGCACACGCCGCAGGTCTACGCCAACGTCAGCATGCG 3350827 24 100.0 37 NNNNNNNNNN ........................ AGCACCAGTCGTCCAGCTCGGGCACTTTCACCGCGCC 3350888 24 100.0 37 NNNNNNNNNN ........................ AGCACACCCTCGGCCCGAACCCGCCCCGGTTCGACCC 3350949 24 100.0 37 NNNNNNNNNN ........................ AGCACAGACGGTGACGCCGAAACCCCACTGCCCACCG 3351010 24 100.0 37 NNNNNNNNNN ........................ AGCACGACCTGGACGTCCGAGAGCAGCGGATCATCGA 3351071 24 100.0 37 NNNNNNNNNN C....................... AGCACGGTGTCGACGGAGTCTCGTATCAGGTTGCGTT 3351132 24 100.0 37 NNNNNNNNNN ........................ AGCACAAGCAGGAAGTCGACGCCACGGTGGAGAACAG 3351193 24 100.0 37 NNNNNNNNNN ........................ AGCACTCGCCGTCAACGAGTCCGATCCGGTCGCCCTC 3351254 24 100.0 37 NNNNNNNNNN ........................ AGCACTCCCGCACCCGGCCGACCATCCACGAGTTCCG 3351315 24 100.0 37 NNNNNNNNNN ........................ AGCACCTACTGGCCGGAACCTGGCTCGCCTGCGCGAG 3351376 24 100.0 37 NNNNNNNNNN ........................ AGCACAAGGTGACCGTGAGAATGTCCGCGCCAGTGGG 3351437 24 100.0 36 NNNNNNNNNN ........................ AGCACATCATCCTGTGCGGCATCATCTTCGGCGTCC 3351497 24 100.0 37 NNNNNNNNNN T....................... AGCACGCCTGCTCATCGCAGGAGACGAAGTGCGACAG 3351558 24 100.0 37 NNNNNNNNNN ........................ AGCACGGTCAGCCACTCCTGTCCGGCCGACTCGCGGG 3351619 24 100.0 37 NNNNNNNNNN C....................... AGCACAGTCCCGGAGAGGCTGACCGGGGCGGCGGAGA 3351680 24 100.0 37 NNNNNNNNNN ........................ AGCACTCGCCCAACCGTCCGACGGTTCACCTTTCGCG 3351741 24 100.0 37 NNNNNNNNNN ........................ AGCACAAGCGGTTCGTCGTCGGCCGGTCCGGCAGGCA 3351802 24 100.0 37 NNNNNNNNNN ........................ AGCACCCGCTGGTGTACAAGCCGCGTGCCGGCCGGCC 3351863 24 100.0 37 NNNNNNNNNN ........................ AGCACGTCGCGGTGAGGGTGATCGTCGGCGAGGTCGG 3351924 24 100.0 37 NNNNNNNNNN ........................ AGCACCGCATTGGACAACATCGCGACCAGCGCGAAGG 3351985 24 100.0 37 NNNNNNNNNN ........................ AGCACCCGGCGGTGACCGGCCTGACGCTGATGTCCCG 3352046 24 100.0 37 NNNNNNNNNN ........................ AGCACGCGACGTACGCCAGGATGTCGAACGAGGCGTC 3352107 24 100.0 37 NNNNNNNNNN ........................ AGCACCCATGTGCGCCCTGGTTTCGTCGTCGTAGGTG 3352168 24 100.0 37 NNNNNNNNNN ........................ AGCACCGGCTCGCTGCCCGATGCCGACCCGGTGATCC 3352229 24 100.0 37 NNNNNNNNNN ........................ AGCACCTGACCTGCCGGCCGGAGGCCCGGTCCATCGC 3352290 24 100.0 37 NNNNNNNNNN ........................ AGCACAGGGCGAACCCGGCACTGAGCGAGCCGTCCGG 3352351 24 100.0 37 NNNNNNNNNN ........................ AGCACCATCTCTCACCAGCCAATTCATGGCCGGCCAG 3352412 24 100.0 37 NNNNNNNNNN A....................... AGCACCCGGTGGTGACCGGCCTGACGCTGATGTCCCG 3352473 24 100.0 37 NNNNNNNNNN ........................ AGCACGGCAGCAGCAGGTGGCCGACGTCGCGGGCGAG 3352534 24 100.0 37 NNNNNNNNNN ........................ AGCACGAGGGTGGGACGTCGGCCACGGCATCGCTAAA 3352595 24 100.0 37 NNNNNNNNNN ........................ AGCACAGCCGCGTCACCAGACTGGTCTGCCTGTCCGA 3352656 24 100.0 37 NNNNNNNNNN ........................ AGCACCAGGGGTGAGCCCGTCGCGGCCGCGGACCCGG 3352717 24 100.0 37 NNNNNNNNNN ........................ AGCACGTGGGCTGGGTCGGGATCGACTGCAAGGCTCG 3352778 24 100.0 37 NNNNNNNNNN ........................ AGCACTCGGCGGCCAGGTCCGGCAGGAGGTCGCCGGA 3352839 24 100.0 37 NNNNNNNNNN ........................ AGCACTCCGGCGGCAGCAGCTTCGACGCCGCGAGGAC 3352900 24 100.0 37 NNNNNNNNNN C....................... AGCACAAGCAGGATCTGCCGACCGCCCTGTCCCGGGC 3352961 24 100.0 37 NNNNNNNNNN ........................ AGCACAGGAACGGCAGCAGGGGCGGATGACGTGACCG 3353022 24 100.0 46 NNNNNNNNNN T....................... AGCACGGTGGCGCAGGCTGCGCCGGTTCACTCGGCGCGGCGGCGGG 3353092 24 100.0 37 NNNNNNNNNN C....................... AGCACCCTTCGCCGCGGCGGTCCTTGCGGACCTCGAC 3353153 24 100.0 37 NNNNNNNNNN ........................ AGCACAGCAGCGGCCGGCCGTCGACGAGCTTCGTGCC 3353214 24 100.0 36 NNNNNNNNNN ........................ AGCACGCGCCTGGCCGTCACGGTCGACCTGGGCGCC 3353274 24 100.0 37 NNNNNNNNNN ........................ AGCACGTCTACATGTGGAACTCGGAGAACTCGGCCAA 3353335 24 100.0 37 NNNNNNNNNN ........................ AGCACTACTCGCCGCCGACCCCCACGGCCTCCGGATC 3353396 24 100.0 37 NNNNNNNNNN ........................ AGCACGCCGGCAACCAGGTCACCCTGACCGGTTCCCG 3353457 24 100.0 37 NNNNNNNNNN ........................ AGCACGTTCACGCGCGCCGGCTAGGTATCGCACGTAT 3353518 24 100.0 37 NNNNNNNNNN ........................ AGCACTACGTCTCGTATTCGGTCGGGGTGAGCTGCGA 3353579 24 100.0 37 NNNNNNNNNN ........................ AGCACAGCAGCTTGTCCTTGACCGCCAGCAGGGCATC 3353640 24 100.0 37 NNNNNNNNNN ........................ AGCACTAGGGCACCAGGCGCTCGGGGACGTCGACCTC 3353701 24 100.0 39 NNNNNNNNNN C....................... AGCACCTACCTCGTCACCAACAACACCTACACGGTCAGC 3353764 24 100.0 37 NNNNNNNNNN ........................ AGCACTGCTGGAACTCGAACCGGTAGGTGCCGTCGTC 3353825 24 100.0 37 NNNNNNNNNN ........................ AGCACCGGGAGACGGTCCCCAGCTTCATCGCTGCCTC 3353886 24 100.0 37 NNNNNNNNNN ........................ AGCACACCTGGGCCGGCGGCACCGGGACCAGCGTCAC 3353947 24 100.0 37 NNNNNNNNNN ........................ AGCACTGACCGCTGTTGCGCCCCTGTTCCAGGCCCTC 3354008 24 100.0 37 NNNNNNNNNN ........................ AGCACTGTTCCGCGGCGACCCTGACCGGTGCTGCCTG 3354069 24 100.0 37 NNNNNNNNNN ........................ AGCACGAACTCATCGCATTCGCAGTAGCGATGCACTC 3354130 24 100.0 37 NNNNNNNNNN ........................ AGCACGGCCCGTATCCGGTTCCGTACCACTTGACCGC 3354191 24 100.0 37 NNNNNNNNNN ........................ AGCACACGTTCCCACCGGCCGGCCTGGAGTGGGTGAG 3354252 24 100.0 37 NNNNNNNNNN ........................ AGCACCATGTCCGTGGCATGGCATCCGACGAACCGGT 3354313 24 100.0 37 NNNNNNNNNN ........................ AGCACGATGGTTCTACGGCTCGGACGAGCAGGCGGTC 3354374 24 100.0 37 NNNNNNNNNN ........................ AGCACTCTGGCGTGCTTCTTTTGGTGCCGTGCTGGTC 3354435 24 100.0 37 NNNNNNNNNN A....................... AGCACCCAGACAACCTCGATCTCGTCGCCCTCGCGCA 3354496 24 100.0 37 NNNNNNNNNN ........................ AGCACATCCAGACAACCGCGGGAAGTGTTGCGGCGAC 3354557 24 100.0 37 NNNNNNNNNN ........................ AGCACCCACCTTTTGGCAGTCGCCTCGCTACCAAGGC 3354618 24 100.0 37 NNNNNNNNNN ........................ AGCACCCAGACAACCTCGATCTCGTCGCCCTCGCGCA 3354679 24 100.0 37 NNNNNNNNNN ........................ AGCACTGTCGGCTGCCTTCCTCCCTGTGATCGGGCCC 3354740 24 100.0 37 NNNNNNNNNN A....................... AGCACTCAACCAGGACATCCCACAGGGTGCCGAAGAT 3354801 24 100.0 37 NNNNNNNNNN ........................ AGCACTGCCACGACGGATTGCTGAGCAGCCCAGCGGA 3354862 24 100.0 37 NNNNNNNNNN C....................... AGCACACCACCATCAGCGCCGGTGCTGCTGACGTCAC 3354923 24 100.0 37 NNNNNNNNNN ........................ AGCACTCGACGTTGAACACGACCAGACCCTCGGCGCC 3354984 24 100.0 37 NNNNNNNNNN ........................ AGCACTTGATCGTGTCGGTGTCCCAGTCGATTTCCTT 3355045 24 100.0 1 NNNNNNNNNN ........................ NNNNNNNNNN ========== ====== ====== ====== ========== ======================== 109 24 37 GGGCTCATCCCCGCGGGCGCGGGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.60,-2.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [8-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [111,176] Score: 0/0.18 # # Final direction: R [0,0.78 Confidence: HIGH] >NC_013235 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3351620 28 100.0 33 ACTCGCGGGC ............................ AGTCCCGGAGAGGCTGACCGGGGCGGCGGAGAG 3351681 28 100.0 33 CGGCGGAGAG ............................ TCGCCCAACCGTCCGACGGTTCACCTTTCGCGG 3351742 28 100.0 33 CCTTTCGCGG ............................ AAGCGGTTCGTCGTCGGCCGGTCCGGCAGGCAG 3351803 28 100.0 33 CGGCAGGCAG ............................ CCGCTGGTGTACAAGCCGCGTGCCGGCCGGCCG 3351864 28 100.0 33 CGGCCGGCCG ............................ GTCGCGGTGAGGGTGATCGTCGGCGAGGTCGGG 3351925 28 100.0 33 CGAGGTCGGG ............................ CGCATTGGACAACATCGCGACCAGCGCGAAGGG 3351986 28 100.0 33 GCGCGAAGGG ............................ CCGGCGGTGACCGGCCTGACGCTGATGTCCCGG 3352047 28 100.0 33 GATGTCCCGG ............................ GCGACGTACGCCAGGATGTCGAACGAGGCGTCG 3352108 28 100.0 33 CGAGGCGTCG ............................ CCATGTGCGCCCTGGTTTCGTCGTCGTAGGTGG 3352169 28 100.0 33 TCGTAGGTGG ............................ CGGCTCGCTGCCCGATGCCGACCCGGTGATCCG 3352230 28 100.0 33 CGGTGATCCG ............................ CTGACCTGCCGGCCGGAGGCCCGGTCCATCGCG 3352291 28 100.0 33 GTCCATCGCG ............................ AGGGCGAACCCGGCACTGAGCGAGCCGTCCGGG 3352352 28 100.0 33 GCCGTCCGGG ............................ CATCTCTCACCAGCCAATTCATGGCCGGCCAGA 3352413 28 100.0 33 GCCGGCCAGA ............................ CCGGTGGTGACCGGCCTGACGCTGATGTCCCGG 3352474 28 100.0 33 GATGTCCCGG ............................ GGCAGCAGCAGGTGGCCGACGTCGCGGGCGAGG 3352535 28 100.0 33 GCGGGCGAGG ............................ GAGGGTGGGACGTCGGCCACGGCATCGCTAAAG 3352596 28 100.0 33 ATCGCTAAAG ............................ AGCCGCGTCACCAGACTGGTCTGCCTGTCCGAG 3352657 28 100.0 33 CCTGTCCGAG ............................ CAGGGGTGAGCCCGTCGCGGCCGCGGACCCGGG 3352718 28 100.0 33 CGGACCCGGG ............................ GTGGGCTGGGTCGGGATCGACTGCAAGGCTCGG 3352779 28 100.0 33 CAAGGCTCGG ............................ TCGGCGGCCAGGTCCGGCAGGAGGTCGCCGGAG 3352840 28 100.0 33 GTCGCCGGAG ............................ TCCGGCGGCAGCAGCTTCGACGCCGCGAGGACC 3352901 28 100.0 33 CGCGAGGACC ............................ AAGCAGGATCTGCCGACCGCCCTGTCCCGGGCG 3352962 28 100.0 33 GTCCCGGGCG ............................ AGGAACGGCAGCAGGGGCGGATGACGTGACCGT 3353023 28 100.0 42 ACGTGACCGT ............................ GGTGGCGCAGGCTGCGCCGGTTCACTCGGCGCGGCGGCGGGC 3353093 28 100.0 33 GGCGGCGGGC ............................ CCTTCGCCGCGGCGGTCCTTGCGGACCTCGACG 3353154 28 100.0 33 GACCTCGACG ............................ AGCAGCGGCCGGCCGTCGACGAGCTTCGTGCCG 3353215 28 100.0 32 CTTCGTGCCG ............................ GCGCCTGGCCGTCACGGTCGACCTGGGCGCCG 3353275 28 100.0 33 CTGGGCGCCG ............................ GTCTACATGTGGAACTCGGAGAACTCGGCCAAG 3353336 28 100.0 33 CTCGGCCAAG ............................ TACTCGCCGCCGACCCCCACGGCCTCCGGATCG 3353397 28 100.0 33 CTCCGGATCG ............................ GCCGGCAACCAGGTCACCCTGACCGGTTCCCGG 3353458 28 100.0 33 CGGTTCCCGG ............................ GTTCACGCGCGCCGGCTAGGTATCGCACGTATG 3353519 28 100.0 33 CGCACGTATG ............................ TACGTCTCGTATTCGGTCGGGGTGAGCTGCGAG 3353580 28 100.0 33 GAGCTGCGAG ............................ AGCAGCTTGTCCTTGACCGCCAGCAGGGCATCG 3353641 28 100.0 33 CAGGGCATCG ............................ TAGGGCACCAGGCGCTCGGGGACGTCGACCTCC 3353702 28 100.0 35 GTCGACCTCC ............................ CTACCTCGTCACCAACAACACCTACACGGTCAGCG 3353765 28 100.0 33 ACGGTCAGCG ............................ TGCTGGAACTCGAACCGGTAGGTGCCGTCGTCG 3353826 28 100.0 33 GCCGTCGTCG ............................ CGGGAGACGGTCCCCAGCTTCATCGCTGCCTCG 3353887 28 100.0 33 CGCTGCCTCG ............................ ACCTGGGCCGGCGGCACCGGGACCAGCGTCACG 3353948 28 100.0 33 CAGCGTCACG ............................ TGACCGCTGTTGCGCCCCTGTTCCAGGCCCTCG 3354009 28 100.0 33 CAGGCCCTCG ............................ TGTTCCGCGGCGACCCTGACCGGTGCTGCCTGG 3354070 28 100.0 33 TGCTGCCTGG ............................ GAACTCATCGCATTCGCAGTAGCGATGCACTCG 3354131 28 100.0 33 GATGCACTCG ............................ GGCCCGTATCCGGTTCCGTACCACTTGACCGCG 3354192 28 100.0 33 CTTGACCGCG ............................ ACGTTCCCACCGGCCGGCCTGGAGTGGGTGAGG 3354253 28 100.0 33 GTGGGTGAGG ............................ CATGTCCGTGGCATGGCATCCGACGAACCGGTG 3354314 28 100.0 33 CGAACCGGTG ............................ GATGGTTCTACGGCTCGGACGAGCAGGCGGTCG 3354375 28 100.0 33 CAGGCGGTCG ............................ TCTGGCGTGCTTCTTTTGGTGCCGTGCTGGTCA 3354436 28 100.0 33 GTGCTGGTCA ............................ CCAGACAACCTCGATCTCGTCGCCCTCGCGCAG 3354497 28 100.0 33 CCTCGCGCAG ............................ ATCCAGACAACCGCGGGAAGTGTTGCGGCGACG 3354558 28 100.0 33 TGCGGCGACG ............................ CCACCTTTTGGCAGTCGCCTCGCTACCAAGGCG 3354619 28 100.0 33 TACCAAGGCG ............................ CCAGACAACCTCGATCTCGTCGCCCTCGCGCAG 3354680 28 100.0 33 CCTCGCGCAG ............................ TGTCGGCTGCCTTCCTCCCTGTGATCGGGCCCA 3354741 28 100.0 33 ATCGGGCCCA ............................ TCAACCAGGACATCCCACAGGGTGCCGAAGATG 3354802 28 100.0 33 GCCGAAGATG ............................ TGCCACGACGGATTGCTGAGCAGCCCAGCGGAC 3354863 28 100.0 33 CCCAGCGGAC ............................ ACCACCATCAGCGCCGGTGCTGCTGACGTCACG 3354924 28 100.0 33 TGACGTCACG ............................ TCGACGTTGAACACGACCAGACCCTCGGCGCCG 3354985 28 100.0 33 CTCGGCGCCG ............................ TTGATCGTGTCGGTGTCCCAGTCGATTTCCTTG 3355046 28 100.0 GATTTCCTTG ............................ GCTTGTTTCG ========== ====== ====== ====== ========== ============================ 57 28 33 GGCTCATCCCCGCGGGCGCGGGGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [3,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [21.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [3288,171] Score: 0.18/0.18 # # Final direction: F [0.55,0.27 Confidence: MEDIUM] >NC_013235 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3356805 28 100.0 33 CGACAAGCAG ............................ GTCACCGTCCACGGCATCGGCAGCACCAGCGGC 3356866 28 100.0 34 CACCAGCGGC ............................ CCCTTGTTGACCCGGTGACCCATCAGCAGGCGGT 3356928 28 100.0 33 AGCAGGCGGT ............................ GCTGGCGAGCGTGCCGGTCGTGGGCGGCCAGGC 3356989 28 100.0 33 GCGGCCAGGC ............................ GGCTCGCAGGCTGGCCGGGCGTGGTGCGTCGGG 3357050 28 100.0 33 GTGCGTCGGG ............................ GTTCCTTCCCTTTCGCGGGTGGGTCGGTGCCGC 3357111 28 100.0 33 TCGGTGCCGC ............................ TTCCCGCTGAACACCCTCCCGGTCGGGACGGAG 3357172 28 100.0 33 CGGGACGGAG ............................ ACCACGAACGCGGCCGGGGACCGCGACTGGCTG 3357233 28 100.0 33 CGACTGGCTG ............................ CTCGCCGCGAACTCTGCGCACGGTGCGGTGAGG 3357294 28 100.0 33 TGCGGTGAGG ............................ GTTCGTGGCGAGCGGCAGTACCTGCACTACCCG 3357355 28 100.0 33 GCACTACCCG ............................ CCGCTCACCCAGCAGGCCAAGATCACGGCCCTG 3357416 28 100.0 33 CACGGCCCTG ............................ TGGCCATGTTCTGGCGGTGAACGTCGCGGAACG 3357477 28 100.0 33 TCGCGGAACG ............................ TGGGGGACGATGAACGTCTGCGATGAACGGGTG 3357538 28 100.0 33 TGAACGGGTG ............................ CACGGTGACGGACAACGTTTTTGCCCGTGGCGG 3357599 28 100.0 33 CCCGTGGCGG ............................ CACACCGGTCCGAGCCAGCGGAGACAGCCCGAG 3357660 28 100.0 33 ACAGCCCGAG ............................ GGTTCCGTGGGTGGGTTGTAAACCTGAAGCGAG 3357721 28 100.0 33 CTGAAGCGAG ............................ GCTGTGTAGCTCTCGTCCTCCTCGACCCGCAAG 3357782 28 100.0 33 GACCCGCAAG ............................ CTGACGATCCCGAACATCTCGACCACGAACAAG 3357843 28 100.0 33 CACGAACAAG ............................ CTACCTCACCGAGTCCATGGCCGGCCAGTCCTG 3357904 28 100.0 33 GCCAGTCCTG ............................ TGGTCGTTCGATGACTGGACTTCGGGCGATGCG 3357965 28 100.0 33 GGGCGATGCG ............................ GCCACCAAGCGGGCGCTCTCGTTTTCGCAGGCG 3358026 28 100.0 33 TTCGCAGGCG ............................ ATTGCCAACCTGCGGGCCTACGACGACTGCCGG 3358087 28 100.0 33 CGACTGCCGG ............................ CTTCTTGATCGTCCACAGCTCTTCGCCCAACTG 3358148 28 100.0 643 CGCCCAACTG ............................ TTCATCGTGCCCCTGGACGACGCACCCAACGTGGGCTCATCCCCGCGGGCGCGGGGAGCACGCGGATGGTGTTCACTGCTGCTGCTCCGTTCGGGGCTCATCCCCGCGGGCGCGGGGAGCACGTCATGCAGACCGGCGAAGCCCTGACCCGGTTCGGCTCATCCCCGCGGGCGCGGGGAGCACTTCGGCGGGGTGCTCGTCGCGCTGGGCGTTCCGGGCTCATCCCCGCGGGCGCGGGGAGCACCCTGACCGGGACGGGCGGGACCCGGTCCTACCGGGCTCATCCCCGCGGGCGCGGGGAGCACCTGGCGCCGTTCACGCCGGAGCCGTGGCGCGCGGGCTCATCCCCGCGGGCGCGGGGAGCACCCATTCGGCGAGGCGTTGACGGATCGGGATGAGGGCTCATCCCCGCGGGCGCGGGGAGCACCTGGCGAAGTCCGCGAGCACCGTCAAGGTCTCGGGCTCATCCCCGCGGGCGCGGGGAGCACGGAGTTCCCGAGCATTTGTACGTGATAGCGATGGGCTCATCCCCGCGGGCGCGGGGAGCACGACGGCCTGCCGTACGGCCGGCAGGCCGCCGGGGGCTCATCCCCGCGGGCGCGGGGAGCACTTCGGATCCCCACCGGACTCAGTGCGAATCTGG 3358819 28 100.0 GCGAATCTGG ............................ ACTTGCGGAC ========== ====== ====== ====== ========== ============================ 24 28 59 GGCTCATCCCCGCGGGCGCGGGGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [3,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [26.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [259,41] Score: 0.18/0.18 # # Final direction: F [0.55,0.27 Confidence: MEDIUM] >NC_013282 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1132148 29 100.0 32 NNNNNNNNNN ............................. GCGACGAGATGGTTTCCGAAACCTATCACGGC 1132209 29 100.0 32 NNNNNNNNNN ............................. GTAAAACGTGTATGCAATATCACTTTTCACCC 1132270 29 100.0 32 NNNNNNNNNN ............................. TTACTGCGTATTTTTTGAATCAGGCCCATTTC 1132331 29 100.0 32 NNNNNNNNNN ............................. TAGACAAAGGCAATAAGATCGAGTTTCCCACT 1132392 29 100.0 32 NNNNNNNNNN ............................. TAGTCGGCCTGGCGTCCGGGAAAATTACCCTC 1132453 29 100.0 32 NNNNNNNNNN ............................. GAAGAACCCGGCAGACATTAAGGCGCAATACC 1132514 29 100.0 32 NNNNNNNNNN ............................. AGCGGCATCTTCCTTACAGTGCGAGAATTGGC 1132575 29 100.0 32 NNNNNNNNNN ............................. CAAATTTCTGAGCGCATCAATAAACGTTTCGA 1132636 29 100.0 32 NNNNNNNNNN ............................. TGAATATTCTTGCGGGGTCTCAGATTTGAAAA 1132697 29 100.0 32 NNNNNNNNNN ............................. GTGCATAAGGTGCGAGCGATCTCCTGTTGGTC 1132758 29 100.0 32 NNNNNNNNNN ............................. GCTATCGTCACCTCTGCGGTAGCGCTTAAACA 1132819 29 100.0 32 NNNNNNNNNN ............................. AATACCCGCAGGTCAGACAAAAAATCAACAGC 1132880 29 100.0 32 NNNNNNNNNN ............................. CGCTTCCAACTAAACCTTGAGGCGCTCGCAGC 1132941 29 100.0 32 NNNNNNNNNN .............C............... GTTTTAACGTTGGAAAGAAGAACATCATAGAG 1133002 29 100.0 32 NNNNNNNNNN .............C............... CTGAACATAGGTTCACTGCAATCATCATTCAC 1133063 29 100.0 32 NNNNNNNNNN .............C............... AGCTAACTTCAACCCGTGCGGCGACGCCGTCG 1133124 29 100.0 32 NNNNNNNNNN .............C............... GGATTACCGCGCCGTCAGACCACTTATCATAC 1133185 29 100.0 32 NNNNNNNNNN .............C.A............. TTGATAATCAGGTTTCGCGGCTGCAGGCGCCC 1133246 29 100.0 32 NNNNNNNNNN .............C............... CTTCTGCTGATACTCCGCCTTAATCGCTTTGC 1133307 29 100.0 32 NNNNNNNNNN .............C............... CGCGAGCTTCGCCTTTACCAGTGGGTGAAGGA 1133368 29 100.0 32 NNNNNNNNNN .............C............... GTCTTCGGTTTTGCTGCGGCCGGTAATGCTGG 1133429 29 100.0 32 NNNNNNNNNN .............C............... CCTGTTTTCTCTAACTGATTACGAGCCACGCC 1133490 29 100.0 32 NNNNNNNNNN ............................. CCATGCTCAGTGCGGCAGCGGGTTTAGTTGCG 1133551 29 100.0 32 NNNNNNNNNN ............................. CACTCGCCGCATGCGTAGGTTTCATCCGGCTC 1133612 29 100.0 32 NNNNNNNNNN ...................A......... CTGAAAATTAACGACTCTTACGCAATGCAGAC 1133673 29 100.0 32 NNNNNNNNNN ............................. TTCGTTGACACCGACGGCAACGTAATCACCAC 1133734 29 100.0 32 NNNNNNNNNN .............C............... GTCTGTTCAAAACTGGACGATTTCGCGCCAGC 1133795 29 100.0 32 NNNNNNNNNN .......T.....C............... GGCCGGAGGAGAGTTACAGCGAGTACAACCGT 1133856 29 100.0 32 NNNNNNNNNN .............C............... GTATTAACGACCTTTTAAACATACCCGGCGTC 1133917 29 100.0 32 NNNNNNNNNN .............C..............T GGCAGGGCGACGATGTGGCCGGGTTTGAAAAC 1133978 29 100.0 32 NNNNNNNNNN .............C............... GTATCCCAATTCATAGCTATGAAGGTGCCAGC 1134039 29 100.0 32 NNNNNNNNNN .............C............... CGTCCAGCAGAGACAGCAGAAACGGCAGCAGT 1134100 29 100.0 32 NNNNNNNNNN .............C............... TAAACCTGGCACGCGAGCGCGCTGGCGCTGAA 1134161 29 100.0 1 NNNNNNNNNN ..T.........................T NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 34 29 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-13.40,-12.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [63.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [98,677] Score: 0.18/0.18 # # Final direction: F [1.92,0.18 Confidence: HIGH] >NC_013235 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 3356560 30 100.0 31 CCGACAAACG .............................. TCCAGGATGACCGCGCTCAGGATCCGGTCCA 3356621 30 100.0 31 ATCCGGTCCA .............................. AACCATGGTTTCCCTTTCCGTGGGCAGTGGG 3356682 30 96.7 GGGCAGTGGG T............................. CGTACACCGC ========== ====== ====== ====== ========== ============================== 3 30 31 GGGCTCATCCCCGCGGGCGCGGGGAGCACC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [3,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-14.30,-14.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [40.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [14,2176] Score: 0.18/0.18 # # Final direction: F [1.42,0.18 Confidence: HIGH] >NC_013282 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1103033 29 100.0 32 NNNNNNNNNN ............................. TGTGGCACGATACAGGCACGCGGGGCGCGGGG 1103094 29 100.0 32 NNNNNNNNNN ............................. AAGTTTTGCCGTTAAATTACCCCCTCCAACGG 1103155 29 100.0 32 NNNNNNNNNN ............................. GAGCTGTTTGCTAACGCCCGGCGTTGCTTCGA 1103216 29 100.0 32 NNNNNNNNNN ............................. CGGCGTCGTATTAACGCCACGGTCGCGCATAA 1103277 29 100.0 32 NNNNNNNNNN ............................. CAGCCGTTTAAAGAGGTGGAGCAGCTCGCGAA 1103338 29 100.0 32 NNNNNNNNNN ............................. GCCGAGCCCGTTACGGCGGCCATCGCCGTGGA 1103399 29 100.0 32 NNNNNNNNNN ............................. GGATTATGATGAATAAATCATATGCATCTTTG 1103460 29 100.0 32 NNNNNNNNNN ............................. GTAATGACATCAATTTGTGCGCAAAAGGTATT 1103521 29 100.0 32 NNNNNNNNNN ............................. CCGGTGAGCTGTGCGAACAGCGCTTCAACCGC 1103582 29 100.0 32 NNNNNNNNNN ............................. TTAGTGAACATCATAAACATTATCAAAGAAAG 1103643 29 100.0 32 NNNNNNNNNN ............................. AACAGTGACGCTTTCAGAATATCGTCCACTTC 1103704 29 100.0 32 NNNNNNNNNN ............................. TCAGGGAGAAAAAATCTCAATATCAGGCAAGG 1103765 29 100.0 32 NNNNNNNNNN ............................. CTTCAGGTTTCCGACCTGCCTAACGCCATGCA 1103826 29 100.0 32 NNNNNNNNNN ............................. TTTTGATTGAGTGCCTGGAATGCGGAAAAAAA 1103887 29 100.0 32 NNNNNNNNNN ............................. ACCGTAGAGCAGAACATCATTGCCCAGGTTGA 1103948 29 100.0 32 NNNNNNNNNN ............................. GAGTGGTACGCGCAGTGCCATACCGCCGATTC 1104009 29 100.0 32 NNNNNNNNNN ............................. TACCAGCATATGACCATAACACCAGGTGACGT 1104070 29 100.0 32 NNNNNNNNNN ............................. TACTCGTCTGAGAGCTGCTGATTGCTGACGCT 1104131 29 100.0 32 NNNNNNNNNN ............................. GCGAGACACAATAGAGGCAGCAGGCAGTCAGT 1104192 29 100.0 32 NNNNNNNNNN ............................. CGCCTCAGGGTCATGTAGAGCCTTCGCCATCA 1104253 29 100.0 32 NNNNNNNNNN ............................. GGCTGGCTGCTGCTGGCGAGCTGTGGGAAGAA 1104314 29 100.0 32 NNNNNNNNNN ............................. TTTGCCGGCGGGATGCTGCTGGCCGCAGCGCT 1104375 29 100.0 32 NNNNNNNNNN ............................. GATTTATAAAAGAAGATGATGTTTATTTCAGG 1104436 29 100.0 32 NNNNNNNNNN ............................. ATTTTGGAAATACACCAAAGCGCGGTGAAAAA 1104497 29 100.0 32 NNNNNNNNNN ............................. GTTTCGCTTTAATAGAATCAGTACGAACAGCA 1104558 29 100.0 32 NNNNNNNNNN ............................. CTGGCAAGATGCGCCAGCGCGCCGAGTGCGGA 1104619 29 100.0 32 NNNNNNNNNN ............................. TACTGACAATAATTGCTGGCATATAAACCCCC 1104680 29 100.0 32 NNNNNNNNNN ............................. CCGGGATAATCCAGTCATTTACGGCGCCGCGT 1104741 29 100.0 32 NNNNNNNNNN ............................. CGAGATGCGCCTGATGCACGACGCCGGGCGGC 1104802 29 100.0 32 NNNNNNNNNN ............................. TCGGTCGGCTCGTCAGACAGCACGCTGAATTT 1104863 29 100.0 32 NNNNNNNNNN ............................. GCCTGGCGCGCTGCGTTCTGGCAAACCACCGA 1104924 29 100.0 32 NNNNNNNNNN ............................. GGCGCGCAGTACCGGCGCAGGAGGTTGACCAC 1104985 29 100.0 32 NNNNNNNNNN ............................T TTATTTCCGTTGCTCCTAAAACTCGCGGGAAC 1105046 29 100.0 32 NNNNNNNNNN ............................. GCTTTCACGCAGCGGATAAGCTCGGCTCTGTG 1105107 29 100.0 32 NNNNNNNNNN ............................. AAATTTCGTGTGTACTCGACTCAGCTATCGCT 1105168 29 100.0 32 NNNNNNNNNN ............................. ATCCGGATGACTGGCAAATCGTGGACACAGAC 1105229 29 100.0 32 NNNNNNNNNN ............A................ CGGCGCACCACGGCGTATCATCGTCTTTAATC 1105290 29 100.0 1 NNNNNNNNNN .......T..................... NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 38 29 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-13.40,-12.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [80,111] Score: 0/0.18 # # Final direction: F [1.65,0 Confidence: HIGH] >NC_013235 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3358208 29 100.0 32 CACCCAACGT ............................. GCGGATGGTGTTCACTGCTGCTGCTCCGTTCG 3358269 29 100.0 32 GCTCCGTTCG ............................. GTCATGCAGACCGGCGAAGCCCTGACCCGGTT 3358330 29 96.6 32 TGACCCGGTT C............................ TTCGGCGGGGTGCTCGTCGCGCTGGGCGTTCC 3358391 29 100.0 32 TGGGCGTTCC ............................. CCTGACCGGGACGGGCGGGACCCGGTCCTACC 3358452 29 100.0 32 CGGTCCTACC ............................. CTGGCGCCGTTCACGCCGGAGCCGTGGCGCGC 3358513 29 100.0 32 CGTGGCGCGC ............................. CCATTCGGCGAGGCGTTGACGGATCGGGATGA 3358574 29 100.0 32 ATCGGGATGA ............................. CTGGCGAAGTCCGCGAGCACCGTCAAGGTCTC 3358635 29 100.0 32 TCAAGGTCTC ............................. GGAGTTCCCGAGCATTTGTACGTGATAGCGAT 3358696 29 100.0 32 TGATAGCGAT ............................. GACGGCCTGCCGTACGGCCGGCAGGCCGCCGG 3358757 29 100.0 32 AGGCCGCCGG ............................. TTCGGATCCCCACCGGACTCAGTGCGAATCTG 3358818 29 100.0 TGCGAATCTG ............................. ACTTGCGGAC ========== ====== ====== ====== ========== ============================= 11 29 32 GGGCTCATCCCCGCGGGCGCGGGGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [3,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [28.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1662,41] Score: 0.18/0.18 # # Final direction: R [0.55,0.68 Confidence: LOW] >NC_013316 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1292344 29 100.0 37 TTATTTTGGG ............................. TCTCCATCTCCAATTAACATAAATAATTCATCCGCTG 1292410 29 100.0 38 TCATCCGCTG ............................. CCGCTTGGCAAATCATAAGAAGGATTATTTTCTCCAAC 1292477 29 100.0 35 TTTCTCCAAC ............................. AAAATAAAAGAGTTTGAATTACCCATTTTTTCATG 1292541 29 100.0 39 TTTTTTCATG ............................. TACGACATTGAATAAAATGGGTACAGAGACAATTTATAA 1292609 29 100.0 37 CAATTTATAA ............................. TTTATAAATCTTTTAATGACTGTCTCTGATGGTACAG 1292675 29 100.0 39 GATGGTACAG ............................. AAAGGAATAGATGATATGATTGCTAATGCTGAACAACAA 1292743 29 100.0 38 TGAACAACAA ............................. GGGTCTGACTTTAATATATATATATATATATATAAATT 1292810 29 100.0 37 TATATAAATT ............................. TTATAAACTCCCACGACAAAATTAACTATAACCTCGT 1292876 29 100.0 37 ATAACCTCGT ............................. AGTTTTAAAGAGGGCAGACCTAAAAAATATACTAAAA 1292942 29 100.0 37 TATACTAAAA ............................. GCAGAAGATTTAGCGACTGTTGTTGCTGAATGGGATG 1293008 29 100.0 37 GAATGGGATG ............................. ATTAAATTGCTCAGTCTAGTACTTAAAGAATTATAAG 1293074 29 100.0 38 GAATTATAAG ............................. TTGCTATGATTTAATTATACGACGTTTTGTCTTTAAAG 1293141 29 100.0 37 GTCTTTAAAG ............................. TGCTGTGCCACAATTTGATGCTTCTATAGCTAAATTC 1293207 29 100.0 37 AGCTAAATTC ............................. CTTTTAAGTGCATCAAAGGAGTTACAAGCTATATTTA 1293273 29 100.0 GCTATATTTA ............................. ACAGATCTAA ========== ====== ====== ====== ========== ============================= 15 29 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.86%AT] # Reference repeat match suggestion: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [909,1619] Score: 0/0.18 # # Final direction: F [0.5,0 Confidence: MEDIUM] >NC_013260 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2344035 36 97.2 36 GGTGGCCTCG -................................... CTCGATCACAGCACCCGCAGTCGCCCTCTTTTACGA 2344107 36 100.0 37 TCTTTTACGA .................................... GCATCGGCGTAATCTCGCCATGCGCCGCCATGAGCGC 2344180 36 100.0 36 CCATGAGCGC .................................... CGAGGATGTTGCCCCACCGCATCGCCTCGTTTTCAT 2344252 36 100.0 36 TCGTTTTCAT .................................... GTTTGGGTGGGTCGAGGACTTTGAGGGATTTCTCAG 2344324 36 100.0 37 GATTTCTCAG .................................... GCATGGGCTTGGCGTCACGCGCAGCCGCCCCTTGTTC 2344397 36 100.0 37 CCCCTTGTTC .................................... GCCGGGTCGAAGCGCATGATCATCGCGGGGACGATTG 2344470 36 100.0 37 GGGACGATTG .................................... ACATATGGAGTCCGCATGGTTGATTCAACTCGGAGCA 2344543 36 100.0 37 ACTCGGAGCA .................................... CATCTAAATACTGGCATCCTCGCTGTCGGATCTCAAT 2344616 36 100.0 38 GGATCTCAAT .................................... TCCGATTGGGGCGGTCTATCCGTGCCGCAAAAGGACTA 2344690 36 100.0 37 AAAAGGACTA .................................... TGAAACGACTCAATCTACTTATCGGTGCGGCAAAAGC 2344763 36 100.0 36 CGGCAAAAGC .................................... CACGTATGAGGTGGACAGCACGGCCTGGTTCCATGC 2344835 36 100.0 37 GGTTCCATGC .................................... CGCTTAGCCTCACCTACTGCACGTACCATATCGATAA 2344908 36 100.0 38 ATATCGATAA .................................... CTCATGCTTCTCGACCAGCCCGGCCCAATCCGGCTCTA 2344982 36 100.0 36 TCCGGCTCTA .................................... CTCGCTCGATCCGTTGAAGCGTGCCGAGATTCTTCA 2345054 36 100.0 37 AGATTCTTCA .................................... TGAAGACTGACCTCGAGGTGTTGGTGAACGGCGTCGT 2345127 36 100.0 37 ACGGCGTCGT .................................... GTGAGCGCCTTGCCAAATGTGAGGGCAAGTACCTCAG 2345200 36 100.0 37 AGTACCTCAG .................................... GGATATTGAGATAGCGGTAGGCAAAGGCTGAGGCCGA 2345273 36 100.0 36 CTGAGGCCGA .................................... TCTGCATCTGATATGTCTGCGATGTTGAATACGACT 2345345 36 100.0 37 GAATACGACT .................................... CTCCGTCGCGCGCTGCTCGTGTATACCCGAATATCCA 2345418 36 100.0 37 CGAATATCCA .................................... CTGTAGAGTTGATCGAGGACACTCCGGCGAGGTTTTT 2345491 36 100.0 37 CGAGGTTTTT .................................... ACCGGCTCAGCAACACGCCAACCGCAGAATTAACGCT 2345564 36 100.0 37 AATTAACGCT .................................... AACGAGCTTATCGGGAGATAATCTAATGACAGAGACG 2345637 36 100.0 36 GACAGAGACG .................................... TATGCTTTCCCAGTGTTCTCCCCGATGCACGTATAC 2345709 36 100.0 GCACGTATAC .................................... CGACATAGTAT ========== ====== ====== ====== ========== ==================================== 24 36 36 CCTTCAATGGGGCCACGGCTCTGAGGCCGTGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [7,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-10.90,-10.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [18.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [353,208] Score: 0/0.18 # # Final direction: F [0.74,0.68 Confidence: LOW] >NC_013315 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1504069 29 93.1 37 TTGGGGTAAA ........................G...G AGGTTTTTCAGAAGTATATGTACGTCTATATTGTAAA 1504135 29 100.0 36 ATATTGTAAA ............................. AAGGAAGGTGGAAGTCAATATGCATGGGTCAAATGG 1504200 29 100.0 36 GGTCAAATGG ............................. ACGAAATTAGAGTTTGAAATATATGACTACATAATA 1504265 29 100.0 38 CTACATAATA ............................. TTGTGTCACATCATTGTCACTTCTTTAGAATATCAAAA 1504332 29 100.0 38 AATATCAAAA ............................. TTTTAAGCAGGTGATTAAATGATTAAAAAAGTAGAAAA 1504399 29 100.0 38 AAGTAGAAAA ............................. AATAACTTGTCAATGTAGTTATATGCAACAACTTCTAT 1504466 29 100.0 37 CAACTTCTAT ............................. GAATTATATATTATGAAAAAATATGGAGTCACAGAGG 1504532 29 100.0 36 GTCACAGAGG ............................. TTGCAGGTTTTCCTTATAGTTTGCCATATGTTCCTG 1504597 29 100.0 35 TATGTTCCTG ............................. TACTTTAGCACTAGTAAAGGTAGAATTATTAAAGT 1504661 29 100.0 37 TTATTAAAGT ............................. TCGAATGTGAATGGCACTTCTATTTCTCCAACTTTTG 1504727 29 100.0 CCAACTTTTG ............................. AGTATAATGT ========== ====== ====== ====== ========== ============================= 11 29 36 GTTTTATATTAACTAAGTGGTATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2019,393] Score: 0.18/0.18 # # Final direction: NA [0.68,0.68 Confidence: NA] >NC_013315 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1615439 29 100.0 36 TTATTTTGGG ............................. CTCGGAGAATTTCCTAATGTGGATTTAATAGGAAGT 1615504 29 100.0 37 AATAGGAAGT ............................. TTTAGCAAATTTTTCGTAAAAGTCACTATTTTCAATG 1615570 29 100.0 38 ATTTTCAATG ............................. ACATATAAAACTTTCATCTTCTGTTAATTCATTAAAAC 1615637 29 100.0 TCATTAAAAC ............................. CCATCTTTTGT ========== ====== ====== ====== ========== ============================= 4 29 37 GTTTTATATTAACTATATGGAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:82.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [68.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [662,727] Score: 0/0.18 # # Final direction: R [0,0.27 Confidence: MEDIUM] >NC_013315 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1709876 29 100.0 36 TTATTTTGGG ............................. GTTGTAAGAAGTATCATTCTATTTTTTAATCTTTCT 1709941 29 100.0 37 TAATCTTTCT ............................. TTCAGTGAGAATAAGCTTTATTGTCGATGTAACACTC 1710007 29 100.0 37 TGTAACACTC ............................. AGTACATATAATGAGTCTTTAACATCAGTTATGAAAG 1710073 29 100.0 36 GTTATGAAAG ............................. GATTGTACTTTAGCGTCTGCACTAGCTTTGTCTATC 1710138 29 100.0 TTTGTCTATC ............................. TATTTTACAGA ========== ====== ====== ====== ========== ============================= 5 29 36 GTTTTAGATTAACTATATGGAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [743,613] Score: 0/0.18 # # Final direction: NA [0,0 Confidence: NA] >NC_013315 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1849663 29 100.0 37 TTATTTTGGG ............................. TTAATTTATCTATAATTTAAAACGGTGAATTACATAT 1849729 29 100.0 37 AATTACATAT ............................. TAAAGAGGGGTACTTCGTACTTTTACCACTCAAACTA 1849795 29 100.0 38 ACTCAAACTA ............................. AGGTCAAGCATAGATTTTGCAACTGGAAGATAAGAAGA 1849862 29 100.0 37 GATAAGAAGA ............................. GTTTTAGAACAGAAAAAATTGTATAAATTGTGGAATG 1849928 29 100.0 37 TTGTGGAATG ............................. TTGTAAAATGTAAATAGCATATTAATTTTTCTTTCAC 1849994 29 100.0 37 TTTCTTTCAC ............................. TGGAGCATTATGTTTTTAGGTTACGGAGCAACATTTA 1850060 29 100.0 37 GCAACATTTA ............................. GGTGATAGTGGAAGTTTTACTTATACTTGGCGTGCTG 1850126 29 100.0 38 TGGCGTGCTG ............................. TTCAGAATACTTAGCTCCTGCGCCTATATCGTCTGAAT 1850193 29 100.0 36 TCGTCTGAAT ............................. AAAGTTTTGCGCATTGTATGTGTGCCTAGATTATCT 1850258 29 100.0 37 TAGATTATCT ............................. ATGTCCCCACATCAATTTTCCTCCGCATGAAAAAATC 1850324 29 100.0 37 TGAAAAAATC ............................. TTTAGAAACAACAGAATAAACATAATATATAAGCATA 1850390 29 100.0 36 TATAAGCATA ............................. CTATATCGCATATTCTTTTATCTAGGTCTTCTTTTC 1850455 29 100.0 37 TCTTCTTTTC ............................. ATAATCTTGTTATAGACTTTACTATTGTTGTAATAGA 1850521 29 100.0 35 TTGTAATAGA ............................. CTTACCAGACCCTGCAACACTAAATGACTTACATA 1850585 29 100.0 37 GACTTACATA ............................. TCATCAGTATTTGTAAAATGCTTTAACTTATCATAAT 1850651 29 100.0 39 TTATCATAAT ............................. TTTTACTTTTCCTTTCTATGTGTCCAATTCGGACACATT 1850719 29 96.6 CGGACACATT .................A........... CTTATACTTA ========== ====== ====== ====== ========== ============================= 17 29 37 GTTTTATATTAACTATGTGGTATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [68.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [648,1366] Score: 0.18/0.18 # # Final direction: F [0.91,0.45 Confidence: MEDIUM] >NC_013316 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1501690 29 93.1 37 TTGGGGTAAA ........................G...G AGGTTTTTCAGAAGTATATGTACGTCTATATTGTAAA 1501756 29 100.0 36 ATATTGTAAA ............................. AAGGAAGGTGGAAGTCAATATGCATGGGTCAAATGG 1501821 29 100.0 36 GGTCAAATGG ............................. ACGAAATTAGAGTTTGAAATATATGACTACATAATA 1501886 29 100.0 38 CTACATAATA ............................. TTGTGTCACATCATTGTCACTTCTTTAGAATATCAAAA 1501953 29 100.0 38 AATATCAAAA ............................. TTTTAAGCAGGTGATTAAATGATTAAAAAAGTAGAAAA 1502020 29 100.0 38 AAGTAGAAAA ............................. AATAACTTGTCAATGTAGTTATATGCAACAACTTCTAT 1502087 29 100.0 37 CAACTTCTAT ............................. GAATTATATATTATGAAAAAATATGGAGTCACAGAGG 1502153 29 100.0 36 GTCACAGAGG ............................. TTGCAGGTTTTCCTTATAGTTTGCCATATGTTCCTG 1502218 29 100.0 35 TATGTTCCTG ............................. TACTTTAGCACTAGTAAAGGTAGAATTATTAAAGT 1502282 29 100.0 37 TTATTAAAGT ............................. TCGAATGTGAATGGCACTTCTATTTCTCCAACTTTTG 1502348 29 100.0 CCAACTTTTG ............................. AGTATAATGT ========== ====== ====== ====== ========== ============================= 11 29 36 GTTTTATATTAACTAAGTGGTATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2019,393] Score: 0.18/0.18 # # Final direction: NA [0.68,0.68 Confidence: NA] >NC_013315 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1712097 28 100.0 38 TTATTTTGGG ............................ TCTTTGTAATGGTAGTGTATTTAAGATTGAAACATCAA 1712163 28 100.0 37 GAAACATCAA ............................ TCAACATTAGTAGTTGTCTTTATACACATAGCATCAC 1712228 28 100.0 39 ATAGCATCAC ............................ TACAGCTCCCAAGACATACAACGAATCTGTAACATCAGT 1712295 28 92.9 TAACATCAGT ................G...T....... AGACTTATTTACAGCTTTATTTGCTAAATCAGAAG ========== ====== ====== ====== ========== ============================ 4 28 38 GTTTTATATTAACTATATGGAATGTAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:82.14%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [454,188] Score: 0.18/0.18 # # Final direction: F [0.59,0 Confidence: HIGH] >NC_013315 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3244625 29 100.0 37 NNNNNNNNNN .C...TC............G......... CTGACACTGTGTCTTGTGTGAGTCTTTTCTTTATCCT 3244691 29 100.0 37 NNNNNNNNNN ............................. GATTAAGCCCAGTAAAAAGACTCGAATCTCTTATCGC 3244757 29 100.0 38 NNNNNNNNNN ............................. GCAAAAAATGTTGATATTCCCAAAATTAATATTGATGA 3244824 29 100.0 37 NNNNNNNNNN ............................. ATTATAGAAGTACATATATTGCTGAAAAACCTCTTGT 3244890 29 100.0 37 NNNNNNNNNN ............................. AGTTAGTGATATCAATATGCTAAGCAATATTTTTACA 3244956 29 100.0 37 NNNNNNNNNN ............................. TTTATATTTCGTCGCACGGATTCGTGCGAAGGGTTGG 3245022 29 100.0 36 NNNNNNNNNN ............................. TAATTTAGTTATATCCATTTGTTTAACCCAATTAGT 3245087 29 100.0 37 NNNNNNNNNN ............................. GTTTCATTTTGCACTATATCAAGCTTAGTATACAATG 3245153 29 100.0 37 NNNNNNNNNN ............................. TTTTATATTTAATTTTAAAGATTAAAGGTATAAACAA 3245219 29 100.0 37 NNNNNNNNNN ............................. TACTAGAATTATTAAATGAAATGAACAATAATATTGT 3245285 29 100.0 36 NNNNNNNNNN ............................. GATTTAAATGCAACACAAATTATAACATCTAAGAAT 3245350 29 100.0 36 NNNNNNNNNN ............................. AAGATTGAAATTTCAACACTTTCACCTTGTATATCT 3245415 29 100.0 38 NNNNNNNNNN ............................. AGGTTAAAAAGCAATATAAAAGATTGCATGGAATTACT 3245482 29 100.0 37 NNNNNNNNNN ............................. AAGTCTCAATAACAACAGTCGAAGCAGAAAAATCCGG 3245548 29 100.0 37 NNNNNNNNNN ............................. GTAAAATGAGAAATAAAAGTAAACAAAAAGGTTTAGT 3245614 29 100.0 41 NNNNNNNNNN ............................. CTGAAACCCTCGGATTTAGTAACCGATTCTATGTCGAGTCT 3245684 29 100.0 38 NNNNNNNNNN ............................. AATCTAAAATATGTTCGTTAAAAGGGAGTGTGTAATTA 3245751 29 100.0 38 NNNNNNNNNN ............................. GTTTCTTATACAACTCTTAACTCCAAGCCCATTTTGGA 3245818 29 100.0 36 NNNNNNNNNN ............................. GTATAAAAAAAGAGTTAGAAGCATTAGACAAATGGA 3245883 29 100.0 37 NNNNNNNNNN ............................. TGTTTTTTAGTTTTCGTGATTCAAATGGTTCTTTGTT 3245949 29 100.0 36 NNNNNNNNNN ............................. AACTCATGTAACAAGTATTAAGACTTGCACCTTTAA 3246014 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 22 29 37 ATTTACATACCACTTAGTTAATATAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [191,185] Score: 0/0.18 # # Final direction: R [0,0.41 Confidence: MEDIUM] >NC_013315 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3491495 29 100.0 36 CCCTTCAATA ............................. CTCTCTACTAAAATTACTTCCACATATAGCTACAGA 3491560 29 100.0 39 TAGCTACAGA ............................. TGTACCTGGGTCTTTTATCTTACTTGTAAGTGTACTTCT 3491628 29 100.0 37 GTGTACTTCT ............................. ATTGCAGATAGGTCTGTGCCATCATTCGTGCTGTTAC 3491694 29 100.0 36 GTGCTGTTAC ............................. TGGGATGGATTTTGAAGCTTCTATGTCAAATGTACA 3491759 29 100.0 37 CAAATGTACA ............................. GAAACCTCTCTTTAAAATTATTCATAGAATTTATAAA 3491825 29 96.6 36 AATTTATAAA ............T................ ATTGTTGCTAGAAAACATTAAAATACATTACACATA 3491890 29 100.0 37 ATTACACATA ............................. GGCTGGACTTGTAATAGTTGTAACTAAAATTAGTGAA 3491956 29 100.0 39 AATTAGTGAA ............................. GGGTAGAATGAATCAAATAGCAAAAGTACTTTCCGGAAT 3492024 29 100.0 TTTCCGGAAT ............................. CCCAAATAAA ========== ====== ====== ====== ========== ============================= 9 29 37 ATTTATAACTAACTTAGTGTAATTTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:82.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [886,254] Score: 0.18/0.18 # # Final direction: F [0.59,0.27 Confidence: MEDIUM] >NC_013315 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2200312 29 96.6 36 ACAATTTTAA -............................ AGTTGTTTTTATTTTTTCTAAAGAGAAAAAACTAGA 2200377 29 100.0 37 AAAAACTAGA ............................. TTTCTGTATATTTTAGTTGTGTTTTAATATTATAACA 2200443 29 100.0 38 TATTATAACA ............................. ATGGCAGTAACTAAGAAGAAAACTATACCTTTTTTATT 2200510 29 100.0 37 CTTTTTTATT ............................. GAGGAAATTTTATACTAATGACTGATGCTAGATTTAA 2200576 29 100.0 38 CTAGATTTAA ............................. TATTATAAGGAGCATTATACGACCAAAAGCCAAAGCAG 2200643 29 100.0 37 GCCAAAGCAG ............................. AAGCAACAGCAAGAGTCGCGACAACATTAAAAACTTC 2200709 29 100.0 39 TAAAAACTTC ............................. CTTTATTTTTTTCTCTATATCGAGTTCGCCAAATTCACT 2200777 29 100.0 36 CAAATTCACT ............................. AGTCCAGCGTTGTGTGGTCGTAACACACCAATCCTA 2200842 29 100.0 ACCAATCCTA ............................. CCCAAAATAA ========== ====== ====== ====== ========== ============================= 9 29 37 CTTTACATTCCATATAGTTAATATAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [229,831] Score: 0.18/0.18 # # Final direction: R [0,0.59 Confidence: HIGH] >NC_013353 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3344751 29 96.6 32 CCAGTGCGCC ................A............ AAAACCAAACTTCTCCATAAATTCCATAGCCG 3344812 29 100.0 32 TCCATAGCCG ............................. GAGTCTATCAGCGACACTACCGGCAATAGCGA 3344873 29 100.0 32 GCAATAGCGA ............................. CTATAGCGCCACGTTCCGAGCGCTGCGAGCTG 3344934 29 100.0 32 CTGCGAGCTG ............................. ACGATGGCGATGCGTGAGAAAGGGGGTCGATA 3344995 29 100.0 32 GGGGTCGATA ............................. AGTTCGCTGAGTAGCCTTTTTTCTGTGCCTAA 3345056 29 100.0 32 CTGTGCCTAA ............................. GAGGTGGCAATACGCGTAGATCATTTGGTCGT 3345117 29 100.0 32 ATTTGGTCGT ............................. CAAAATATTACGAGCTTCGTCAGGCCATGGAC 3345178 29 100.0 GGCCATGGAC ............................. ACTAAGCATA ========== ====== ====== ====== ========== ============================= 8 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [83,98] Score: 0/0.18 # # Final direction: R [0,1.92 Confidence: HIGH] >NC_013353 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3370925 29 93.1 32 GTTATATGGT -.............A.............. GCCTGACATTGCAGACGTTACAAATTGAGAGG 3370986 29 100.0 32 AATTGAGAGG ............................. TAATCACGTTTTAGCGCGCCCTCGTCCGGTTT 3371047 29 100.0 32 CGTCCGGTTT ............................. ATCACGATAACGCTGCTGTGATTCGTCCCCGT 3371108 29 100.0 32 TCGTCCCCGT ............................. AAGACGACGTGATCCGCAAAGTCGAAGGCACG 3371169 29 100.0 32 CGAAGGCACG ............................. TGTTTTTCTGCCGGTTTAACACGGTGCGATAA 3371230 29 100.0 32 GGTGCGATAA ............................. TGTTTCTGTCCCAACTGAACAGCGCCGATAGT 3371291 29 100.0 32 CGCCGATAGT ............................. GAATGATCCCAAATTTGGGTTACAGAACCAGT 3371352 29 100.0 32 CAGAACCAGT ............................. GGACTTAAAGATCGCATCACAGTACTGGAGGG 3371413 29 100.0 TACTGGAGGG ............................. TGTAAACATA ========== ====== ====== ====== ========== ============================= 9 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,6] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [642,340] Score: 0/0.18 # # Final direction: R [0,1.65 Confidence: HIGH] >NC_013316 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1613062 29 100.0 36 TTATTTTGGG ............................. CTCGGAGAATTTCCTAATGTGGATTTAATAGGAAGT 1613127 29 100.0 37 AATAGGAAGT ............................. TTTAGCAAATTTTTCGTAAAAGTCACTATTTTCAATG 1613193 29 100.0 38 ATTTTCAATG ............................. ACATATAAAACTTTCATCTTCTGTTAATTCATTAAAAC 1613260 29 100.0 TCATTAAAAC ............................. CCATCTTTTGT ========== ====== ====== ====== ========== ============================= 4 29 37 GTTTTATATTAACTATATGGAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:82.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [68.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [662,727] Score: 0/0.18 # # Final direction: R [0,0.27 Confidence: MEDIUM] >NC_013355 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1255057 28 100.0 33 ATCTCTTCTA ............................ AAGAATATGTTCGTGACCGTGATAATCCAACAA 1255118 28 100.0 32 AATCCAACAA ............................ ATCCGCGCCGCATTTTTTGTCAGCCGCAATCA 1255178 28 100.0 33 GCCGCAATCA ............................ AGCGAATAGCTGAAAATTTATATTTCAATTCGT 1255239 28 100.0 32 TTCAATTCGT ............................ TGAAATGTTGGGCGTTAACAAACCCTCGTGGT 1255299 28 100.0 33 CCCTCGTGGT ............................ AAAGAAAGCGGCGAGGCTTTGCAAATTCGCCTA 1255360 28 100.0 32 AATTCGCCTA ............................ TATGGGTTTATGATACTTATTGCCTGTTTTAT 1255420 28 100.0 32 CCTGTTTTAT ............................ CGCTGCACCCCGTCCCAGTGCAAGCCCGACAG 1255480 28 100.0 32 AGCCCGACAG ............................ AGTTATATCAATAAATGAACCATCCTTTTCAT 1255540 28 100.0 32 TCCTTTTCAT ............................ AAGAAGATCATAAAGACGACGAAGATGATAGC 1255600 28 100.0 32 AGATGATAGC ............................ ACACCTCCAAGTGTCGCTAATAGCCTTTGTCC 1255660 28 100.0 32 GCCTTTGTCC ............................ TGCCTCCTCTCTAGCGCGATCTGGCGCTAGAG 1255720 28 100.0 33 GGCGCTAGAG ............................ TATCTATTGCCGATTCGTTACCAATTAAAAAAC 1255781 28 96.4 32 ATTAAAAAAC ..................G......... ACATGGATTTTTCAGCAGCCAATAGCATGTCC 1255841 28 100.0 33 TAGCATGTCC ............................ GTTTGGCACCGCGATAACATCAACGTTCCTACT 1255902 28 100.0 32 CGTTCCTACT ............................ ATTCGTCAAGTAGCGTGATGCTATCATAGACG 1255962 28 100.0 ATCATAGACG ............................ GTAAGCGGTGCAATAGTTAAATATCACTGACCA ========== ====== ====== ====== ========== ============================ 16 28 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [424,659] Score: 0/0.18 # # Final direction: F [1.92,0 Confidence: HIGH] >NC_013316 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1705739 29 100.0 36 TTATTTTGGG ............................. GTTGTAAGAAGTATCATTCTATTTTTTAATCTTTCT 1705804 29 100.0 37 TAATCTTTCT ............................. TTCAGTGAGAATAAGCTTTATTGTCGATGTAACACTC 1705870 29 100.0 37 TGTAACACTC ............................. AGTACATATAATGAGTCTTTAACATCAGTTATGAAAG 1705936 29 100.0 36 GTTATGAAAG ............................. GATTGTACTTTAGCGTCTGCACTAGCTTTGTCTATC 1706001 29 100.0 TTTGTCTATC ............................. TATTTTACAGA ========== ====== ====== ====== ========== ============================= 5 29 36 GTTTTAGATTAACTATATGGAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [743,613] Score: 0/0.18 # # Final direction: NA [0,0 Confidence: NA] >NC_013316 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1845528 29 100.0 37 TTATTTTGGG ............................. TTAATTTATCTATAATTTAAAACGGTGAATTACATAT 1845594 29 100.0 37 AATTACATAT ............................. TAAAGAGGGGTACTTCGTACTTTTACCACTCAAACTA 1845660 29 100.0 38 ACTCAAACTA ............................. AGGTCAAGCATAGATTTTGCAACTGGAAGATAAGAAGA 1845727 29 100.0 37 GATAAGAAGA ............................. GTTTTAGAACAGAAAAAATTGTATAAATTGTGGAATG 1845793 29 100.0 37 TTGTGGAATG ............................. TTGTAAAATGTAAATAGCATATTAATTTTTCTTTCAC 1845859 29 100.0 37 TTTCTTTCAC ............................. TGGAGCATTATGTTTTTAGGTTACGGAGCAACATTTA 1845925 29 100.0 37 GCAACATTTA ............................. GGTGATAGTGGAAGTTTTACTTATACTTGGCGTGCTG 1845991 29 100.0 38 TGGCGTGCTG ............................. TTCAGAATACTTAGCTCCTGCGCCTATATCGTCTGAAT 1846058 29 100.0 36 TCGTCTGAAT ............................. AAAGTTTTGCGCATTGTATGTGTGCCTAGATTATCT 1846123 29 100.0 37 TAGATTATCT ............................. ATGTCCCCACATCAATTTTCCTCCGCATGAAAAAATC 1846189 29 100.0 37 TGAAAAAATC ............................. TTTAGAAACAACAGAATAAACATAATATATAAGCATA 1846255 29 100.0 39 TATAAGCATA ............................. TTTTACTTTTCCTTTCTATGTGTCCAATTCGGACACATT 1846323 29 96.6 CGGACACATT .................A........... CTTATACTTA ========== ====== ====== ====== ========== ============================= 13 29 37 GTTTTATATTAACTATGTGGTATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [68.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [648,1366] Score: 0.18/0.18 # # Final direction: F [0.91,0.45 Confidence: MEDIUM] >NC_013361 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =========================== ====== 3787035 27 92.6 34 GTTATATGGT -........................G. TCAACATCGGAAACGGCTTCGCGGCGGCGGCGTC 3787096 27 100.0 34 CGGCGGCGTC ........................... TCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTC 3787157 27 96.3 34 CGTCAGGCTC .........................G. TCTACGTGAAGAATATTTGCAACACCCGCAAGAA 3787218 27 96.3 34 CCCGCAAGAA .........................G. TCGGCATAGCCAGGCTGATCCGGCGACGGCCTTA 3787279 27 100.0 34 GACGGCCTTA ........................... ACAATCGTGTGTAAATTCGCGGCGGCTCCACTGG 3787340 27 100.0 34 GCTCCACTGG ........................... ACTGGTCGAAATATAGACAGCATGTTCCGTACCA 3787401 27 100.0 34 TTCCGTACCA ........................... ACACACTATCCGGGCGGTATTACGCCCAAATATC 3787462 27 100.0 34 CCCAAATATC ........................... ACCTGCCGGGTGAAACCACTCGCGGCAGATCTTG 3787523 27 100.0 34 GCAGATCTTG ........................... ACACTACTGTCGGTAGCTGGGAGGATGAGGAGAT 3787584 27 100.0 ATGAGGAGAT ........................... ACTCTAAAC ========== ====== ====== ====== ========== =========================== 10 27 34 CGGTTTATCCCCGCTGGCGCGGGGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-5.70,-6.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [641,342] Score: 0/0.18 # # Final direction: R [0,1.65 Confidence: HIGH] >NC_013361 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3760755 29 100.0 32 NNNNNNNNNN G..AG.TCTA....A..G........TT. TAAGTGATATCCATCATCGCATCCAGTGCGCC 3760816 29 100.0 32 NNNNNNNNNN ................A............ AAAACCAAACTTCTCCATAAATTCCATAGCCG 3760877 29 100.0 32 NNNNNNNNNN ............................. GAGTCTATCAGCGACACTACCGGCAATAGCGA 3760938 29 100.0 32 NNNNNNNNNN ............................. GAGAGTGCTGACAGGTGTCTCGATTACCTGAT 3760999 29 100.0 32 NNNNNNNNNN ............................. GGTAGTACGCGCCTCCGGACGTTTTTATGTCG 3761060 29 100.0 32 NNNNNNNNNN ............................. TCTTCGCGGGTAATCAATGATGATTCAGTTTC 3761121 29 100.0 32 NNNNNNNNNN ............................. GAACGCAATATCACGGCGTTCTGCGGCCTCGG 3761182 29 100.0 32 NNNNNNNNNN ............................. CAAAATATTACGAGCTTCGTCAGGCCATGGAC 3761243 29 100.0 32 NNNNNNNNNN ............................. GTCGGGCCGGGTAAGTGAACCTGTCGGTTTTC 3761304 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 10 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [22,98] Score: 0.18/0.18 # # Final direction: R [0,2.1 Confidence: HIGH] >NC_013364 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3445983 29 96.6 32 CCAGTGCGCC ................A............ AAAACCAAACTTCTCCATAAATTCCATAGCCG 3446044 29 100.0 32 TCCATAGCCG ............................. GAGAGTGCTGACAGGTGTCTCGATTACCTGAT 3446105 29 100.0 32 ATTACCTGAT ............................. GAACGCAATATCACGGCGTTCTGCGGCCTCGG 3446166 29 100.0 32 GCGGCCTCGG ............................. GTCGGGCCGGGTAAGTGAACCTGTCGGTTTTC 3446227 29 100.0 GTCGGTTTTC ............................. ACTAAGC ========== ====== ====== ====== ========== ============================= 5 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [83,98] Score: 0/0.18 # # Final direction: R [0,1.92 Confidence: HIGH] >NC_013316 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1707960 28 100.0 38 TTATTTTGGG ............................ TCTTTGTAATGGTAGTGTATTTAAGATTGAAACATCAA 1708026 28 100.0 37 GAAACATCAA ............................ TCAACATTAGTAGTTGTCTTTATACACATAGCATCAC 1708091 28 100.0 39 ATAGCATCAC ............................ TACAGCTCCCAAGACATACAACGAATCTGTAACATCAGT 1708158 28 92.9 TAACATCAGT ................G...T....... AGACTTATTTACAGCTTTATTTGCTAAATCAGAAG ========== ====== ====== ====== ========== ============================ 4 28 38 GTTTTATATTAACTATATGGAATGTAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:82.14%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [454,188] Score: 0.18/0.18 # # Final direction: F [0.59,0 Confidence: HIGH] >NC_013316 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2280867 29 96.6 36 ACAATTTTAA -............................ AGTTGTTTTTATTTTTTCTAAAGAGAAAAAACTAGA 2280932 29 100.0 37 AAAAACTAGA ............................. TTTCTGTATATTTTAGTTGTGTTTTAATATTATAACA 2280998 29 100.0 38 TATTATAACA ............................. ATGGCAGTAACTAAGAAGAAAACTATACCTTTTTTATT 2281065 29 100.0 37 CTTTTTTATT ............................. GAGGAAATTTTATACTAATGACTGATGCTAGATTTAA 2281131 29 100.0 38 CTAGATTTAA ............................. TATTATAAGGAGCATTATACGACCAAAAGCCAAAGCAG 2281198 29 100.0 37 GCCAAAGCAG ............................. AAGCAACAGCAAGAGTCGCGACAACATTAAAAACTTC 2281264 29 100.0 39 TAAAAACTTC ............................. CTTTATTTTTTTCTCTATATCGAGTTCGCCAAATTCACT 2281332 29 100.0 36 CAAATTCACT ............................. AGTCCAGCGTTGTGTGGTCGTAACACACCAATCCTA 2281397 29 100.0 ACCAATCCTA ............................. CCCAAAATAA ========== ====== ====== ====== ========== ============================= 9 29 37 CTTTACATTCCATATAGTTAATATAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [229,831] Score: 0.18/0.18 # # Final direction: R [0,0.59 Confidence: HIGH] >NC_013364 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =========================== ====== 3471957 27 100.0 34 NNNNNNNNNN T.......................... TCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTC 3472018 27 100.0 34 NNNNNNNNNN .........................G. TCTACGTGAAGAATATTTGCAACACCCGCAAGAA 3472079 27 100.0 34 NNNNNNNNNN ........................... ACTCCAACCTTCCATGAGATACGCGCATTAGCGG 3472140 27 100.0 34 NNNNNNNNNN ........................... ACCGTGACCGCCTGTACACGCTGTAATGGCTCAC 3472201 27 100.0 34 NNNNNNNNNN ........................... ACACACTATCCGGGCGGTATTACGCCCAAATATC 3472262 27 100.0 34 NNNNNNNNNN ........................... ACCTGCCGGGTGAAACCACTCGCGGCAGATCTTG 3472323 27 100.0 1 NNNNNNNNNN ........................... NNNNNNNNNN ========== ====== ====== ====== ========== =========================== 7 27 34 CGGTTTATCCCCGCTGGCGCGGGGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-5.70,-6.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [640,343] Score: 0/0.18 # # Final direction: R [0,1.65 Confidence: HIGH] >NC_013364 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3472018 28 89.3 36 CGTCAGGCTC .........................--- GCTCTACGTGAAGAATATTTGCAACACCCGCAAGAA 3472082 28 100.0 33 CCCGCAAGAA ............................ CTCCAACCTTCCATGAGATACGCGCATTAGCGG 3472143 28 100.0 33 GCATTAGCGG ............................ CCGTGACCGCCTGTACACGCTGTAATGGCTCAC 3472204 28 100.0 33 AATGGCTCAC ............................ CACACTATCCGGGCGGTATTACGCCCAAATATC 3472265 28 100.0 33 CCCAAATATC ............................ CCTGCCGGGTGAAACCACTCGCGGCAGATCTTG 3472326 28 100.0 GCAGATCTTG ............................ CTCTAAACAT ========== ====== ====== ====== ========== ============================ 6 28 33 CGGTTTATCCCCGCTGGCGCGGGGAACA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-9.00,-10.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [36.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [701,339] Score: 0.18/0.18 # # Final direction: R [0.18,1.92 Confidence: HIGH] >NC_013316 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3325155 29 100.0 37 NNNNNNNNNN .C...TC............G......... CTGACACTGTGTCTTGTGTGAGTCTTTTCTTTATCCT 3325221 29 100.0 37 NNNNNNNNNN ............................. GATTAAGCCCAGTAAAAAGACTCGAATCTCTTATCGC 3325287 29 100.0 38 NNNNNNNNNN ............................. GCAAAAAATGTTGATATTCCCAAAATTAATATTGATGA 3325354 29 100.0 37 NNNNNNNNNN ............................. ATTATAGAAGTACATATATTGCTGAAAAACCTCTTGT 3325420 29 100.0 37 NNNNNNNNNN ............................. AGTTAGTGATATCAATATGCTAAGCAATATTTTTACA 3325486 29 100.0 37 NNNNNNNNNN ............................. TTTATATTTCGTCGCACGGATTCGTGCGAAGGGTTGG 3325552 29 100.0 36 NNNNNNNNNN ............................. TAATTTAGTTATATCCATTTGTTTAACCCAATTAGT 3325617 29 100.0 37 NNNNNNNNNN ............................. GTTTCATTTTGCACTATATCAAGCTTAGTATACAATG 3325683 29 100.0 37 NNNNNNNNNN ............................. TTTTATATTTAATTTTAAAGATTAAAGGTATAAACAA 3325749 29 100.0 37 NNNNNNNNNN ............................. TACTAGAATTATTAAATGAAATGAACAATAATATTGT 3325815 29 100.0 36 NNNNNNNNNN ............................. GATTTAAATGCAACACAAATTATAACATCTAAGAAT 3325880 29 100.0 36 NNNNNNNNNN ............................. AAGATTGAAATTTCAACACTTTCACCTTGTATATCT 3325945 29 100.0 38 NNNNNNNNNN ............................. AGGTTAAAAAGCAATATAAAAGATTGCATGGAATTACT 3326012 29 100.0 37 NNNNNNNNNN ............................. AAGTCTCAATAACAACAGTCGAAGCAGAAAAATCCGG 3326078 29 100.0 37 NNNNNNNNNN ............................. GTAAAATGAGAAATAAAAGTAAACAAAAAGGTTTAGT 3326144 29 100.0 41 NNNNNNNNNN ............................. CTGAAACCCTCGGATTTAGTAACCGATTCTATGTCGAGTCT 3326214 29 100.0 38 NNNNNNNNNN ............................. AATCTAAAATATGTTCGTTAAAAGGGAGTGTGTAATTA 3326281 29 100.0 38 NNNNNNNNNN ............................. GTTTCTTATACAACTCTTAACTCCAAGCCCATTTTGGA 3326348 29 100.0 36 NNNNNNNNNN ............................. GTATAAAAAAAGAGTTAGAAGCATTAGACAAATGGA 3326413 29 100.0 38 NNNNNNNNNN ............................. TATAATTGGGATGGTCAGGTTTCTGATAAGGTTAATAA 3326480 29 100.0 37 NNNNNNNNNN ............................. TGTTTTTTAGTTTTCGTGATTCAAATGGTTCTTTGTT 3326546 29 100.0 36 NNNNNNNNNN ............................. AACTCATGTAACAAGTATTAAGACTTGCACCTTTAA 3326611 29 100.0 36 NNNNNNNNNN ............................. TTCATTAATTCCTTTCATAGCACTTAAGTTAACCAA 3326676 29 100.0 39 NNNNNNNNNN ............................. CTTTAGTTGTTGTCGCTTTTGCTTCTACTATAGTTGCTT 3326744 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 25 29 37 ATTTACATACCACTTAGTTAATATAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [191,185] Score: 0/0.18 # # Final direction: R [0,0.41 Confidence: MEDIUM] >NC_013316 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3572226 29 100.0 36 CCCTTCAATA ............................. CTCTCTACTAAAATTACTTCCACATATAGCTACAGA 3572291 29 100.0 39 TAGCTACAGA ............................. TGTACCTGGGTCTTTTATCTTACTTGTAAGTGTACTTCT 3572359 29 100.0 37 GTGTACTTCT ............................. ATTGCAGATAGGTCTGTGCCATCATTCGTGCTGTTAC 3572425 29 100.0 36 GTGCTGTTAC ............................. TGGGATGGATTTTGAAGCTTCTATGTCAAATGTACA 3572490 29 100.0 37 CAAATGTACA ............................. GAAACCTCTCTTTAAAATTATTCATAGAATTTATAAA 3572556 29 96.6 36 AATTTATAAA ............T................ ATTGTTGCTAGAAAACATTAAAATACATTACACATA 3572621 29 100.0 37 ATTACACATA ............................. GGCTGGACTTGTAATAGTTGTAACTAAAATTAGTGAA 3572687 29 100.0 39 AATTAGTGAA ............................. GGGTAGAATGAATCAAATAGCAAAAGTACTTTCCGGAAT 3572755 29 100.0 TTTCCGGAAT ............................. CCCAAATAAA ========== ====== ====== ====== ========== ============================= 9 29 37 ATTTATAACTAACTTAGTGTAATTTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:82.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [886,254] Score: 0.18/0.18 # # Final direction: F [0.59,0.27 Confidence: MEDIUM] >NC_013355 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1909883 28 100.0 32 GCTTGCATTT ............................ GCAACGACTCATTGCGGCTTTGCTGACTTTAC 1909943 28 100.0 32 CTGACTTTAC ............................ CCTATGATCAATGGTGTCCCGTTATACAGACA 1910003 28 100.0 33 TATACAGACA ............................ ATTGGCGAGCGCATCAGCCGCCCATCGCCCAAT 1910064 28 100.0 32 ATCGCCCAAT ............................ TGTTGGTCGCTTTCTGATTATTGAGTATCGCG 1910124 28 100.0 32 GAGTATCGCG ............................ TAGATGTTAGTGTCTTTTCTGACGGGTTTGTT 1910184 28 100.0 32 CGGGTTTGTT ............................ GTCTGTCTTCTATGTCCGGTCTTTTGAAGATT 1910244 28 100.0 32 TTTGAAGATT ............................ ACCCGACCGCAGGAACATATTGGTCAGATCGC 1910304 28 100.0 33 GTCAGATCGC ............................ TGAAGATACATAATGTTAACAATGGGCTGATGA 1910365 28 100.0 32 GGGCTGATGA ............................ ATGCACAGGCGACTATTTTTAGATTTTGCAGG 1910425 28 100.0 32 ATTTTGCAGG ............................ AATTGGCTTATTCTCTAATAACGTTTCGACAT 1910485 28 100.0 33 GTTTCGACAT ............................ ACAAAAGTCTCAACGGCCTCGTTTACATATTCA 1910546 28 100.0 33 TACATATTCA ............................ AAATTTCGTATAGCATCTTGTCTGAAATAAGCT 1910607 28 100.0 32 GAAATAAGCT ............................ ACTTATTGACCCGATTTATACAGATATTGAAA 1910667 28 100.0 33 GATATTGAAA ............................ AAAACTTAGTGTTAGGCAAAAAGCCTTCCGTTC 1910728 28 100.0 38 CCTTCCGTTC ............................ TCCTCGTAACCTTCATCGGTGCCGTTGTATTCGTCGAG 1910794 28 100.0 32 ATTCGTCGAG ............................ ATGACATAGCGCTCCCGCAGTTCTTTTTCTAC 1910854 28 100.0 33 CTTTTTCTAC ............................ AGAATTGATCTTCTCTTCGCTGTTGCCACCCTT 1910915 28 100.0 32 TGCCACCCTT ............................ TTTGCCATTTTGAAGCCTTTTGTTTAATTCCT 1910975 28 100.0 32 TTTAATTCCT ............................ GCGGCGGCTCTAATGCAACAGAGGGCGGAGCA 1911035 28 100.0 33 GGGCGGAGCA ............................ TTTCCACCTTTAATTTGCACGTCCTCACGGTGA 1911096 28 100.0 32 CTCACGGTGA ............................ GAAAACGCCCCTGAATTGCCGCTTGATCGTCT 1911156 28 100.0 32 TTGATCGTCT ............................ ATACGGACATCGCAAAACTCACTCGTAAACTG 1911216 28 100.0 33 TCGTAAACTG ............................ TTGTTGTAGCGCAGACCTTTTTCGGAGGTTTTA 1911277 28 100.0 32 GGAGGTTTTA ............................ CCATCTGGCGTAACATTGCGCTTATAGCCGTT 1911337 28 100.0 32 TATAGCCGTT ............................ ATCAGCAAGCACTAATTCACCATCTTTGAAAT 1911397 28 100.0 33 TCTTTGAAAT ............................ TCTAAGACGCTTACGTCTGACAACATTCAGTCG 1911458 28 100.0 32 CATTCAGTCG ............................ AGAACGCGGATTTCATCGGCTTTTGGGGCGTG 1911518 28 100.0 32 TTGGGGCGTG ............................ ATAAATCACCAATAGCATCTAAAATTAACCTT 1911578 28 100.0 33 AATTAACCTT ............................ TCCAGTAATTGACTGTCCAGCAATGTTTCCGGC 1911639 28 100.0 TGTTTCCGGC ............................ TAGAGTAAAT ========== ====== ====== ====== ========== ============================ 30 28 32 TTTCTAAGCTGCCTGTGCGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [4,476] Score: 0.18/0.18 # # Final direction: R [0,0.92 Confidence: HIGH] >NC_013355 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 126428 28 100.0 32 ACGGGCATAA ............................ TTCGGGAATTGCACGATGAAGGAAACGAAAAA 126488 28 100.0 33 AAACGAAAAA ............................ GATGGCAGCACATATAGCTATATCACAAGCAAT 126549 28 100.0 32 CACAAGCAAT ............................ GCAAAAACAACCGCCACACTTGGTCATCATCC 126609 28 100.0 32 GTCATCATCC ............................ CTGATCGCGCCGCCCAGTCCGCTAACCACGAT 126669 28 100.0 33 TAACCACGAT ............................ CATAGCTGCAAATTGGCGCGATACGACGATTTT 126730 28 100.0 32 CGACGATTTT ............................ ATTATATCGTTGCGCATCTTGCCTCACTTCGA 126790 28 100.0 32 CTCACTTCGA ............................ CATCGGAATGACTGGCTGAACGGGAAATATAA 126850 28 100.0 32 GGAAATATAA ............................ ACTTTTCCAGTAAAGCCCTGCCGATTGATCTT 126910 28 100.0 33 GATTGATCTT ............................ TTAACGATCGTCATTTCTTGGCGGCCGCCAAGT 126971 28 100.0 32 GCCGCCAAGT ............................ GTGTCAAAAGAGACATACCCAAAGTTTCTTAC 127031 28 100.0 32 AGTTTCTTAC ............................ ATTGCTGCATAGCTGTGGCGCAACAATCTTGT 127091 28 100.0 32 ACAATCTTGT ............................ TCGCTAGCGCCTTATCGACGCGCTCTTGAATG 127151 28 100.0 CTCTTGAATG ............................ TAGAGGCAAA ========== ====== ====== ====== ========== ============================ 13 28 32 TTTCTAAGCTGCCTGTGCGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [53.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [152,558] Score: 0.18/0.18 # # Final direction: R [0,1.19 Confidence: HIGH] >NC_013357 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 33670 32 100.0 34 AGTAGGGAAA ................................ AATGCTAGCTTCGTAAAAGCAAAGATTGGCGGGC 33736 32 100.0 35 ATTGGCGGGC ................................ CCAGTCAAATGTATCGGCCAGTCGCCTAACGCCAC 33803 32 100.0 34 CTAACGCCAC ................................ AAAACTCCGCCTTTGGTGATATCTGAAACATCAT 33869 32 100.0 35 GAAACATCAT ................................ ATTGAAATATCCATTGCCACCAAAGGAAACAAGCG 33936 32 100.0 33 GAAACAAGCG ................................ CATACAGACTGAATACCGCAGTAAATTACTGAC 34001 32 100.0 34 AATTACTGAC ................................ CAATTCTATGGCAATACCCCTCTTCTGGGCGACT 34067 32 100.0 32 CTGGGCGACT ................................ GCTAGAAAGGCCGGCTTTCTTAGCAATGCTAC 34131 32 100.0 34 GCAATGCTAC ................................ ACCAAAGACTCTGAAGCTGTGAATATTTTACTTA 34197 32 100.0 34 ATTTTACTTA ................................ ATTGACTGTATGCACAAAGCAATGGTTTTCGCGC 34263 32 100.0 34 GTTTTCGCGC ................................ TAATAAGTTCAAGCAGTCTATCGGCCAATTCATG 34329 32 100.0 34 CCAATTCATG ................................ GATTATACGGGCTTTCCAGAGATTGGTGTTATAG 34395 32 100.0 36 GGTGTTATAG ................................ AGCATATCTTTGCCGGACATACTCTTGGCAACAAGC 34463 32 100.0 33 GGCAACAAGC ................................ TGAATGGATGTGGTCTAATCCTGATGCAAACAG 34528 32 100.0 36 ATGCAAACAG ................................ ACTTCGATACGACGAATGTCTTGTGTTGGAAGCGGC 34596 32 100.0 35 TGGAAGCGGC ................................ TACATGTCGTGAAAACTGTCTCGGCGGGTCAGGTG 34663 32 100.0 34 GGGTCAGGTG ................................ ACCGGTCAGAACATAATCGACGTTGGCCTCGTGG 34729 32 100.0 35 GGCCTCGTGG ................................ ACCAAGTTCCTTGTACCGGTTAGCGCAGGTCTCCG 34796 32 100.0 34 CAGGTCTCCG ................................ TTATTTCATCAGAAGACGACTCACCATTAACTGC 34862 32 100.0 35 CATTAACTGC ................................ AAATCAACGTTAGACCCTGTTGGCGAGAGCATTGC 34929 32 100.0 34 AGAGCATTGC ................................ CATCCATCCATCCCAAAGACCGTTGAATACTGTG 34995 32 100.0 36 GAATACTGTG ................................ TTCCAAGACCGTTCCTGTCATTGTAATTTCGCATAA 35063 32 100.0 34 TTTCGCATAA ................................ TTATCAGATTGTTGTCGATCACAATCGTGTCTGC 35129 32 100.0 34 TCGTGTCTGC ................................ ATAGAGACGATAAAGTTTCTATTTGCAAAAAAGG 35195 32 100.0 34 GCAAAAAAGG ................................ ATCATAATTCGGTTCGGCTTTCGAGCCATCTTTG 35261 32 100.0 33 GCCATCTTTG ................................ GGACTTTGAATACGCGATCTTGCCAAGAGAAGA 35326 32 100.0 35 CAAGAGAAGA ................................ AGACTTTGAATACGCGATCTTGCCGAGAGAAGAAC 35393 32 100.0 34 AGAGAAGAAC ................................ ACCCAAGGTAATGCTATCATGCAGATAATTCTTT 35459 32 100.0 34 ATAATTCTTT ................................ CAACTATAGCCTGCGTGATTTTCCTACGTTCTTG 35525 32 100.0 35 TACGTTCTTG ................................ AACGTCTTTACCGATTTCCCCCCATGTATGAACAA 35592 32 100.0 33 GTATGAACAA ................................ ATCTCCCCGAAATGACTGTTGAGTAGAATATTA 35657 32 100.0 36 TAGAATATTA ................................ ACCAGCGAATTACGCCACAAAAACCCTGATTTGTGC 35725 32 100.0 35 TGATTTGTGC ................................ TTTAATGACGGACTGCATTTTACGCATACGTGCAT 35792 32 100.0 34 ATACGTGCAT ................................ GAGAAATTCTTCCGCGCCTTGACTTTCGAACTTG 35858 32 100.0 37 TTCGAACTTG ................................ TGCCACTGCTGGCCGGTTGAAATTATGGCCAAATCAA 35927 32 100.0 35 GCCAAATCAA ................................ TGAATCTTATCAGTTGCATTATTCGCGAGGCCAGC 35994 32 100.0 35 CGAGGCCAGC ................................ CCCCATGGTGGCCGTCGCGGGGACGCGCTGAGCGC 36061 32 100.0 35 CGCTGAGCGC ................................ GGTTTTAATGAACCATGCAAAAGTTGCTTTGAAAT 36128 32 100.0 35 GCTTTGAAAT ................................ CTTCCCAAGCTGTCTAAAACGTTTGTTTTTTGGAC 36195 32 100.0 33 TTTTTTGGAC ................................ GCTCTATCTGTCCGCAGGCAACAGGCGGGTTTT 36260 32 100.0 36 GGCGGGTTTT ................................ ACCGAGCATATAGCTTATTTTGTCGAAGTCGCTCAT 36328 32 100.0 35 AGTCGCTCAT ................................ AAAACAAACTTGACGAATCACTTCGGGGTTATCAT 36395 32 100.0 33 GGGTTATCAT ................................ CATTATTCACAAGAGCGCGAAGTTTGCCGGATT 36460 32 100.0 34 TTGCCGGATT ................................ GGATCTCTGGAAACAATTATGTCAGGTGCGGCTG 36526 32 100.0 34 GGTGCGGCTG ................................ GTCCCCAAGGCAGAGAAATCATCGACAGGCATCG 36592 32 100.0 34 ACAGGCATCG ................................ GGTAAAGAAGGCGCGGCTTCGATCGCGACAATGG 36658 32 100.0 33 GCGACAATGG ................................ AATGCTTTGAAGCTGCTCAATGAGTGGCTGCAT 36723 32 100.0 33 GTGGCTGCAT ................................ CGGCAACGTCAGGGTATGATTACCGAGCCTTTA 36788 32 100.0 33 CGAGCCTTTA ................................ TAACAAAGTGTATCGAGCACACCGAGGCAATAA 36853 32 100.0 34 GAGGCAATAA ................................ TTGATCGTACCCGTTGCATCTCGCTCGCGAGCAA 36919 32 100.0 TCGCGAGCAA ................................ AGAGCCAACT ========== ====== ====== ====== ========== ================================ 50 32 34 GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [5,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [213,588] Score: 0.18/0.18 # # Final direction: F [5.14,0.55 Confidence: HIGH] >NC_013385 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1775088 37 100.0 38 CTCCCCCCTA ..................................... ACCAGGAAGACGGGGAGGGCTTCCCCCGCCGCCGGGGA 1775163 37 100.0 35 CCGCCGGGGA ..................................... CCCCGTGACGTTGGCGGCCTGGGCGGCGAACTGTA 1775235 37 100.0 37 GCGAACTGTA ..................................... TCCATAGGTTTCATCCCGCTTGAGTGGCAGGACTTTG 1775309 37 100.0 36 CAGGACTTTG ..................................... CTATGTCTTCCAACCCTTTCTCCAACTGCTCCGTAA 1775382 37 100.0 35 TGCTCCGTAA ..................................... GGCCGGCACGGGTACGGCTTACTGGGACGGCGTAC 1775454 37 100.0 38 GACGGCGTAC ..................................... GTGGCTTGTCAAGCCAGAAGCGCACATCGTCATAGGTT 1775529 37 100.0 GTCATAGGTT ..................................... CCCGCGATTG ========== ====== ====== ====== ========== ===================================== 7 37 36 CTTTCAGTCCCCTTGTCATCGGGGAAGGTACTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [7,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.80,-9.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [51.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [107,392] Score: 0.18/0.18 # # Final direction: R [0.27,0.92 Confidence: MEDIUM] >NC_013385 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1042896 30 100.0 38 CACAAAACGG .............................. ATGAACTCTCCTAGCGTCATGGCTTCCACTACCTTCGG 1042964 30 100.0 37 CTACCTTCGG .............................. AGTACTGAAGAAGGCGGCGCAAGCCCCTTCTCTCCAG 1043031 30 100.0 35 TTCTCTCCAG .............................. TACCTACTGCACCCCAGGCTGGGAAGCCCGGGTGC 1043096 30 100.0 37 GCCCGGGTGC .............................. GGTCGTGGACCCCTTTGCGGGCAGCGGAGCTTTCGGC 1043163 30 100.0 37 AGCTTTCGGC .............................. CCGATGTACCCCCAACGGAGGAAGTCCTGAGGTTCTT 1043230 30 100.0 36 TGAGGTTCTT .............................. GGAAAGCGTATGTCTAACGCCCCCCGGATGGTGGAG 1043296 30 100.0 36 GATGGTGGAG .............................. AGGATATCCCCCGGCTGCACCGGTTCCAGGCAGAAA 1043362 30 100.0 37 CAGGCAGAAA .............................. CTGTATACTTGAGCCACCGCAAGAGGGACTATGTAAA 1043429 30 96.7 36 ACTATGTAAA .............................T GTGGAACGGAGCACCAGCGCCAGGAAGTTCAGTTCC 1043495 30 100.0 37 GTTCAGTTCC .............................. CTTATACCACCCCTTTCGTAAAACGCCTGCAGATCCG 1043562 30 100.0 36 TGCAGATCCG .............................. TGGGCCTGCCGTGCTTTAGCTCCGCCACCGCCTCCC 1043628 30 100.0 37 ACCGCCTCCC .............................. TGCCGCGTCGCCAAGCATGCCGTGAATCGCCACCCAC 1043695 30 100.0 36 CGCCACCCAC .............................. AACTGCACGAGGATGTTGTTGATAAGACTGAAGGGA 1043761 30 100.0 36 ACTGAAGGGA .............................. TCAAGGTCTTCTACTCGGACGGCAATTCTCCCTCTC 1043827 30 100.0 36 TCTCCCTCTC .............................. GGGAAGCGCACGTCCAGCGCCCCCCGGACGGTGACG 1043893 30 100.0 GACGGTGACG .............................. TCCGCCCATG ========== ====== ====== ====== ========== ============================== 16 30 36 ATTTGTAGCCTACCTACGAGGGGTTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.20,-1.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [33.3-35.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [270,173] Score: 0/0.18 # # Final direction: F [0.37,0 Confidence: MEDIUM] >NC_013385 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 694576 30 100.0 37 CGCAAAACGG .............................. GGAGGAAGCGACTGTTTTAGAAGACAAGCCCAAGCGT 694643 30 100.0 36 GCCCAAGCGT .............................. CGTATAGTGTGTTCAAGAAAGGTGGGTTTAAACACT 694709 30 100.0 37 TTTAAACACT .............................. TTAAGAAAAAGACCCCTCAAAGGTCCTTGCGTACAAA 694776 30 100.0 36 TGCGTACAAA .............................. GCCAATCGTAGCGTGCCGGTTGACGTGCGTAACTGG 694842 30 100.0 36 GCGTAACTGG .............................. CGGCCTCCGGCGCTTTGGCCGCAGTCTCTCCTACAT 694908 30 100.0 36 TCTCCTACAT .............................. CCGGACCTCGGTGCGGTACCAGGAGAAGTCCATATC 694974 30 100.0 36 AGTCCATATC .............................. AAAAGCTGCGGGAACTGCTTGGGGTGGGCGCCGATG 695040 30 100.0 36 GGCGCCGATG .............................. AGTCCTGGGCTACCTGGGTCACGACTTTGGGGTTGT 695106 30 100.0 40 TTGGGGTTGT .............................. GCTAAGGCGCTGGACAAAGTGAAGGAGATATCGCCGGAAG 695176 30 100.0 37 TCGCCGGAAG .............................. TCCACACCCAGCGGCGCGTCCAGGCTCAGGACCTGAA 695243 30 100.0 36 AGGACCTGAA .............................. AACCCATCGCCCCCGCAGGCGAGACGGCGCGCGGGT 695309 30 100.0 37 GCGCGCGGGT .............................. ACCGGAGCGAACAGGCGCTCGCTCCCGGCCAGCGTCA 695376 30 100.0 37 GCCAGCGTCA .............................. ACAAGATTTGCGCGGTTGTGATATTTTGTAGAGGAGG 695443 30 100.0 36 GTAGAGGAGG .............................. GGTACAACCCAGCCTATTTGGCGCAGGTCGAGACCG 695509 30 100.0 36 GTCGAGACCG .............................. ACGGGCAACAAGTGGCCACAGTAGTCCTCCTCCCTC 695575 30 100.0 36 CTCCTCCCTC .............................. ATGAAAGTCTGCTCCGGACCCGACGGGACCTGGAAG 695641 30 100.0 35 GACCTGGAAG .............................. TGAACAGGAAAAGGCCACTCTGCGGGGCGGGGGAA 695706 30 100.0 37 GGCGGGGGAA .............................. GGTAGCCGGGTACCTCCGCTGGCGGAGGTGGATGGGC 695773 30 100.0 37 GTGGATGGGC .............................. AGCTATGCAGGAAGGATGCTACTAGAGGGGCGGAAGG 695840 30 96.7 GGGCGGAAGG .............................T AGTTCTCTG ========== ====== ====== ====== ========== ============================== 20 30 36 GTTTGTAGCCTACCTATGAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.80,-0.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [41.7-45.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [251,295] Score: 0/0.18 # # Final direction: F [5.28,0 Confidence: HIGH] >NC_013385 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 925686 30 100.0 36 CACGAAACGG .............................. AGCAGCCGCTGGCCTTCCGGGACGGCGAAGAGCATC 925752 30 100.0 36 GAAGAGCATC .............................. CGGAGCGGGAACTCCGGGCGGTCCGGGAGTGCTGGG 925818 30 100.0 36 GAGTGCTGGG .............................. ATAGCCTACCTGCCCACACTACCCTATATCACCACT 925884 30 100.0 36 TATCACCACT .............................. ACATACGAAGCGTCGTACGCTCCCGCCACGACGAAA 925950 30 100.0 36 CACGACGAAA .............................. AAGGCTCGCTGAAAATTAAGAACAGCAATACCACCG 926016 30 100.0 36 AATACCACCG .............................. TCCCTATTGACGAACTCAGCTTTCCTTCCACAACAG 926082 30 100.0 37 TCCACAACAG .............................. ACGATGAACATTGGGTTGTTCGCAAGATACATGTTTA 926149 30 100.0 37 TACATGTTTA .............................. CTCCCCGCTTCCGCAGCTCCCTCAGCAGCTGGTCGGC 926216 30 100.0 38 GCTGGTCGGC .............................. TTAGGGGATTACAAGTCGGCGAGGGAATTCGCCCTGAA 926284 30 100.0 36 TCGCCCTGAA .............................. GTGAAGGAGGTGGCGTAGGACTTTTGCTCCACCTGT 926350 30 100.0 37 CTCCACCTGT .............................. CGGGCGATCCTGACGGCGGTGGACAACTTCTCTACAA 926417 30 100.0 36 TTCTCTACAA .............................. AGAGTTTTCAAAGCTGAAACGCAGTTTGGCGAGGCT 926483 30 100.0 36 TGGCGAGGCT .............................. CCAGCGACCGCGTTATCGGTCTGGACGACTACAGCG 926549 30 100.0 35 GACTACAGCG .............................. GTAGAGGATTTTATTGTGCCGCTGATTGTACCGCG 926614 30 100.0 36 TTGTACCGCG .............................. TGGCGGCCACGACGCGGTCCTCGCCGACTTCGGCAG 926680 30 100.0 36 ACTTCGGCAG .............................. CCTTCTTCCAGGGGCAGAACTTTCCTAACGGTAAAA 926746 30 100.0 36 AACGGTAAAA .............................. AGCCGAGCAGTTCGTACGCGGAAAGCGAAGCTATAA 926812 30 100.0 37 GAAGCTATAA .............................. TCGAAGACCTGTGCCGGGAAGTCCTCATCGCGGAGCA 926879 30 100.0 36 TCGCGGAGCA .............................. GGTGGTTTTAAAACGGTAGGTCTGAAAGGTCTTTGT 926945 30 100.0 AGGTCTTTGT .............................. GCCCAGGCAA ========== ====== ====== ====== ========== ============================== 20 30 36 GTTTGTAGCCTACCTATGAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.80,-0.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [251,204] Score: 0/0.18 # # Final direction: F [4.87,0 Confidence: HIGH] >NC_013385 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 818981 30 100.0 35 GATAAAACGG .............................. ATGGAAGAGCCACCGCTTCCGGGACGTGCTGGGGA 819046 30 100.0 36 GTGCTGGGGA .............................. CTATCCACGGCCAGACGAAAAAGACCGTGGGAATTC 819112 30 100.0 36 GTGGGAATTC .............................. CCAGAACCAGAAACCCGGATAACAGCGCTGTCCTTA 819178 30 100.0 38 GCTGTCCTTA .............................. CCCCCCAGGGGCAGGTCTTCGAAGTGAAGGTCGGCGAA 819246 30 100.0 36 GGTCGGCGAA .............................. AGATATAACAGCTACTTTAGGCAGAAAACAAAGGAA 819312 30 100.0 36 AACAAAGGAA .............................. GCCGCAGCGCTACCGAGTTCCTTCTTAACAAGCTCC 819378 30 100.0 36 AACAAGCTCC .............................. CTTCCCAGCGCGCTGGTAAAGCTTCCCATATTGAAC 819444 30 100.0 36 CATATTGAAC .............................. AAACCTTGGGCAAGGCGAGGTTACTCGTCCCCCTCA 819510 30 100.0 36 GTCCCCCTCA .............................. TGGCGGAAGGCGTGGCCCGCGCCCACTTCTGCCGCA 819576 30 100.0 36 TTCTGCCGCA .............................. TGCAGGAGCTCTATCTCCCGTGGTGGCCCGCTGGCG 819642 30 100.0 36 CCCGCTGGCG .............................. CAGGCGGCGCACTTCACTACCCAGTTAGCGTAGCAG 819708 30 100.0 37 AGCGTAGCAG .............................. GCTTATTAGGATGGTGAGATAGGACGAGGAGGTGATG 819775 30 100.0 37 GGAGGTGATG .............................. CCTGGGAGAGGAGGCGGCGATCATAACGAGGGATCTG 819842 30 100.0 36 GAGGGATCTG .............................. GTTCTTCTAGGCCACCTACGCTTTCCATGTTGGCGT 819908 30 100.0 38 ATGTTGGCGT .............................. GGCCAGACCTGGCAGCGGTTCATCTCCTCCGCCACCGC 819976 30 100.0 36 CCGCCACCGC .............................. CATACCCACCGCCTAACTGGTACACACTTGACCAGC 820042 30 100.0 37 CTTGACCAGC .............................. AACCACCCACACGCTCCCAGATCCCGCATGTACGGCT 820109 30 100.0 35 ATGTACGGCT .............................. CTTCAAACTGGCGACAACGGGGGCGGGGATGTACC 820174 30 100.0 36 GGGATGTACC .............................. CACCGGACGCCCCGCTCCCGAAAGTCCGGGCAGGTG 820240 30 100.0 36 CGGGCAGGTG .............................. TACGCTAGCGGCACGCCTTAAGCACCTCCAGGTCTC 820306 30 100.0 35 TCCAGGTCTC .............................. AGGATCTCGCGGACGAGCATGCTATCGGCCTCCTT 820371 30 100.0 36 CGGCCTCCTT .............................. CCTGCACGGGCGTCAACCCACAGAGTACTTCTCCTA 820437 30 100.0 37 ACTTCTCCTA .............................. AGGTCGAGACCCCGGCGGAGACCGAACTGCGCCGTGC 820504 30 100.0 36 TGCGCCGTGC .............................. CCGTAGACTTCTACGGCGTCATGTCCGCCCAAATTG 820570 30 100.0 36 GCCCAAATTG .............................. CTTTCCTTTTGTGCCGGGAAGTGCGGGGCTGTCAAG 820636 30 100.0 GGCTGTCAAG .............................. AGGTAATTCTTGTTCAGCCAGTGATAAGGCGAATCC ========== ====== ====== ====== ========== ============================== 26 30 36 GTTTGTAGCCTACCTATGAGGGCTTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.20,-3.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [30.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [313,100] Score: 0.18/0.18 # # Final direction: F [0.55,0.27 Confidence: MEDIUM] >NC_013385 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 927177 30 100.0 36 CCACTTCCTG .............................. ATTCTGGTGGTGGGAAACCGAAAGCTTTCCTAAAGG 927243 30 100.0 35 TTCCTAAAGG .............................. GCCGACGCCTCAGCAGGAACTCCACACCCTCCCGC 927308 30 100.0 37 ACCCTCCCGC .............................. CCTTTGCAGGCGGCGGCGTTCGCCGCCCCTGCCTTCG 927375 30 100.0 36 CCTGCCTTCG .............................. CCAGGTCTATAAGAAGCAGCGCCACTTCGTCAGGAT 927441 30 100.0 39 TCGTCAGGAT .............................. ATTACGGTACCATCCTCCAGCTCGGTCTCACAAAGACCG 927510 30 100.0 37 ACAAAGACCG .............................. CTGTCAGCGAACAGCGCGTGGTGCGGGAAAGTCGGCG 927577 30 100.0 37 AAAGTCGGCG .............................. CCGCACCTGCCGTTATCCGGGGGGGTTCACCCAGAAG 927644 30 100.0 34 CACCCAGAAG .............................. GAAGTAGCCCAGGGGATGCCGGGGGCCGTGAAGC 927708 30 100.0 36 GCCGTGAAGC .............................. GTATGTGCACCTATTATCTTGGCGGAGTTTGCGAAC 927774 30 100.0 37 GTTTGCGAAC .............................. CAGAGAGCGCTCCAAACTGTCATCCAAAACGCCCACA 927841 30 100.0 36 AACGCCCACA .............................. GGGCAGCGGTCACGAACACCATGCCAGCGGGAACCT 927907 30 100.0 36 GCGGGAACCT .............................. AACCCGATCTCCTCTAATTCCCCGGGATCGGGCTCG 927973 30 100.0 36 ATCGGGCTCG .............................. CTATCAGCACGACCGCCCTGGTGAGGTTGTGGCCGA 928039 30 100.0 36 TTGTGGCCGA .............................. CCGTCCCGGCGAACCGGGCCTGGCTGATCCAGCAGG 928105 30 100.0 37 ATCCAGCAGG .............................. GCCGAGCACTACGTCTAGGAAGCTGAAAACGTAGTGG 928172 30 100.0 39 AACGTAGTGG .............................. GAGAGCACCGAGGGGCATAGCTACAGCCTTTCCAGGCTG 928241 30 100.0 36 TTCCAGGCTG .............................. GTGCCCTGCGCTGCCGGGTTCCCCGCGGAGTTGCAG 928307 30 100.0 GGAGTTGCAG .............................. CGCACAGTAA ========== ====== ====== ====== ========== ============================== 18 30 36 GTTTGTAGCCTACCTATGAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.80,-0.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [41.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [139,208] Score: 0/0.18 # # Final direction: F [4.87,0.27 Confidence: HIGH] >NC_013385 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 928543 30 100.0 36 GGTGATGCAG .............................. GGCCACCCGGGGGCCCACCACGCGCCCCACTTCCCC 928609 30 100.0 36 CCACTTCCCC .............................. CAAGCTTGGTAAGCAGTACATTCATGCCGTTGACGA 928675 30 100.0 37 CCGTTGACGA .............................. GTTAGCTAGGGCCATAACAACAGCCAGGCAGAGGAAG 928742 30 100.0 36 GCAGAGGAAG .............................. GCACCGGCGGGCACCTGGCCCTGGCGGCCTACTACT 928808 30 100.0 37 GCCTACTACT .............................. CCAGGTAGGTCTCCGTCGGCTGCAGGAAAAGCTTGCG 928875 30 100.0 38 AAAGCTTGCG .............................. CGGTTGTCTGCTACCGCGTCGCACGAGCCTCACCCCGC 928943 30 100.0 36 CTCACCCCGC .............................. GCTAAAGGCGAGAGTCTGCGGTCGATAGCCCGTGCT 929009 30 100.0 37 AGCCCGTGCT .............................. AACTGGTAGGTTGGCCGCAGATACGCGTTCCCATCTG 929076 30 100.0 35 TTCCCATCTG .............................. TTCTCCTCCCTTCCCGTTTTTTCCTGGGGCATTCC 929141 30 100.0 36 GGGGCATTCC .............................. AGGAATCCGAGACTCCGAACGGCAGGTGCGTGATCA 929207 30 100.0 37 TGCGTGATCA .............................. TCCCTGCCTCCCAGCAGCGCCGGGGAACAACAGACCT 929274 30 100.0 36 CAACAGACCT .............................. TCCACCACGGCCCTCTTCAGCTCCGGGTCGGCAGTG 929340 30 100.0 37 GTCGGCAGTG .............................. ACAACCGCGCCGTGCCCCCGCTGGCCATCCTGGTCGG 929407 30 100.0 38 TCCTGGTCGG .............................. GCGCCCGCAGGTCGCCGGGCCTGACGCCGTCGCCGTCC 929475 30 100.0 36 GTCGCCGTCC .............................. ACCGCCATACTCTCTCCCCCTTTTTAGTTTTGGCCC 929541 30 100.0 35 GTTTTGGCCC .............................. GGACCAGCCGTTCGCCAGCGCTTCGTGCAGCACCT 929606 30 100.0 TGCAGCACCT .............................. AAGACTGCTA ========== ====== ====== ====== ========== ============================== 17 30 36 GTTTGTAGCCTACCTATGAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.80,-0.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [48.3-50.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [141,124] Score: 0/0.18 # # Final direction: F [4.87,0 Confidence: HIGH] >NC_013385 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 991878 30 100.0 36 CACAAAACGG .............................. CCGCCCATAGGGCCGGGGGTCTTCCCGGCGTTGATA 991944 30 100.0 36 GGCGTTGATA .............................. AACATGCTACTTCTTCCCCCTTACCACCTTTCCAAT 992010 30 100.0 36 CCTTTCCAAT .............................. AAGTGCAACGCATTTCCCGCCGTCCAGGCCCCTGTA 992076 30 100.0 35 GGCCCCTGTA .............................. GCCATGAAGACGCGGTTCCTGTGCACCGCCACCAG 992141 30 100.0 36 CCGCCACCAG .............................. GACATTCTGATGAGTCCTTCAGGGCGCGAGTAGACG 992207 30 100.0 36 CGAGTAGACG .............................. CTCTTCCACTAGCCGCCATTCCATAGCGGCTAGTGC 992273 30 100.0 35 CGGCTAGTGC .............................. CGGCACAGCAGCGCTCCCCGCTTGACCCTGCGCCG 992338 30 100.0 36 CCCTGCGCCG .............................. CCTTCCACCCGCCGAAGACGAAGAGCGGCAGGCGCA 992404 30 100.0 37 GGCAGGCGCA .............................. ATAAGGTTGCCGTTCGCATCCCTAATGGTAAGCAACA 992471 30 100.0 37 GTAAGCAACA .............................. AGTATTCCGGCTATCGCCCCCGTACTGTCACCACCTC 992538 30 100.0 37 TCACCACCTC .............................. TTAGGCTAACGGAAAAGTTACCTTTCTTATCTAGTAT 992605 30 100.0 37 TATCTAGTAT .............................. CTCTCTGCGCCGAGTGCGGCGCGAAGGTTGCGGTATG 992672 30 100.0 38 TTGCGGTATG .............................. GCGGGGGAGGTCCCTTCCCCACCGCGGCGGCCAACCCG 992740 30 100.0 36 GGCCAACCCG .............................. GCTCGGCCAGCTGCTCGACCAACTGGGGATCAAGTT 992806 30 100.0 38 GGATCAAGTT .............................. ACATCTGCACGGGCGGAGTTATGCGCGGCACCTTTGTC 992874 30 100.0 36 CACCTTTGTC .............................. CCCGCAGCGACGACAGAGACGTGTCCCTCGAAGAGC 992940 30 100.0 36 CTCGAAGAGC .............................. CTTTTTTCGCTACCGTGCCGGCCTTTTGGCCATCTC 993006 30 100.0 36 TGGCCATCTC .............................. TTCCCCCAGCCCCGCAGGTTCCAGAAGTGGGTGCGC 993072 30 100.0 38 GTGGGTGCGC .............................. CTGACCACGCTGATGGAAGTCTTCTGGGAGTGCTTCAG 993140 30 100.0 35 AGTGCTTCAG .............................. GCCACAGGAGCACAAGCCGTACTCTTTCGGAACAG 993205 30 100.0 35 TTCGGAACAG .............................. AACGGGCCGGTCTCTCCGAGGGGTGGTTGATCGCG 993270 30 100.0 37 GTTGATCGCG .............................. TCTTCCCGGGCGCGGCGCACCGGGTGGACGCGCTCCT 993337 30 100.0 35 ACGCGCTCCT .............................. AGATAGGCGACGGCGTGTTCCTGCGCCTGATGAAG 993402 30 100.0 38 CCTGATGAAG .............................. AAGGGAGAAGGAGTTCCCGTTGCGCAGACAGGAGTGGG 993470 30 100.0 38 CAGGAGTGGG .............................. CCCTACTATTCCCACCACACCCACGACGTGACAGGCGC 993538 30 100.0 36 TGACAGGCGC .............................. GTGTTCCCGGCAGGCTGCAGAAAGTGACGGGGTACG 993604 30 100.0 37 ACGGGGTACG .............................. CGGGTGTAGTCCACGCCGTTGACCGTCTCGATCACGG 993671 30 100.0 38 TCGATCACGG .............................. GTAATGCTGGCATAAAGGCAGAGCAGGCGGGTACGACT 993739 30 100.0 37 GGGTACGACT .............................. ACATCTCCTGGAGCCCTGTCCAGGGCGCGAGCTACTA 993806 30 100.0 CGAGCTACTA .............................. GTTTTTCTGG ========== ====== ====== ====== ========== ============================== 30 30 36 GTTTGTAGCCTACCTATGAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.80,-0.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [45.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [193,170] Score: 0/0.18 # # Final direction: F [4.87,0.27 Confidence: HIGH] >NC_013406 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 712552 19 100.0 28 NNNNNNNNNN ................... AGGAAGTGTGCAGCAATAGGGCGACGAT 712599 19 100.0 27 NNNNNNNNNN ................... GCTAAGCGTGGCGCAATGTACAACGCC 712645 19 100.0 1 NNNNNNNNNN ................... NNNNNNNNNN ========== ====== ====== ====== ========== =================== 3 19 27 TGAACGTAAGTCACAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:57.89%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [35.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1235,199] Score: 0.18/0.18 # # Final direction: R [0.18,0.27 Confidence: LOW] >NC_013407 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1092182 30 100.0 36 TTCATTCTTA .............................. TCTAATAATGATTTCATAACCACATTATATATATAC 1092248 30 100.0 37 ATATATATAC .............................. ATAAAATTGATATTATGGACTTAGAAAATGAATTTAC 1092315 30 100.0 43 ATGAATTTAC .............................. GGAGGGTTAAAATGACAAGTATTTTTTTAGAACTTAATAAAAC 1092388 30 100.0 36 TTAATAAAAC .............................. GTTGTTCATCCGTTATATATGTATCCTTTATTACTA 1092454 30 100.0 TTTATTACTA .............................. AGGGTAATTTT ========== ====== ====== ====== ========== ============================== 5 30 38 ATTTCCATCACGATCCGTGCTGATTTTAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-3.20,-3.20] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [73.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [75,372] Score: 0.18/0.18 # # Final direction: R [0,0.45 Confidence: MEDIUM] >NC_013407 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1134676 30 100.0 35 CTTTTTTCCT .............................. CCCCGTAACCCTTGTAGCAGTGCTTCTCCATGATG 1134741 30 100.0 35 CTCCATGATG .............................. GTAAATACAATGAAGGTATAAAGTATTTAATAGGT 1134806 30 100.0 44 TTTAATAGGT .............................. CTTTAATTAGTAAATGTCATAATGATACTGATACTGTAATATTT 1134880 30 100.0 40 TGTAATATTT .............................. TAATAGGGAGCTGTATATATCGCATCAAGGTCTTTCATGC 1134950 30 100.0 45 TCTTTCATGC .............................. GTATTTATTTGCGGTTATAAAACATAAAGAGGTAGTAAAAAAGCA 1135025 30 100.0 36 TAAAAAAGCA .............................. GATAGGATTTCCATCCTTATCAAATTCTATCTCTTC 1135091 30 100.0 36 CTATCTCTTC .............................. TGCATTGTTTAAAATATATAAATGGAGTGAAGGATC 1135157 30 100.0 40 GTGAAGGATC .............................. AGACAGACGACTATTCAGAATTTATAGATCTCTTCGACGA 1135227 30 100.0 37 TCTTCGACGA .............................. TTGATTTATTACTTCTATTATATCCTCAGCTAATTTC 1135294 30 100.0 35 AGCTAATTTC .............................. CCCCGTAACCCTTGTAGCAGTGCTTCTCCATGATG 1135359 30 100.0 35 CTCCATGATG .............................. GTAAATACAATGAAGGTATAAAGTATTTAATAGGT 1135424 30 100.0 36 TTTAATAGGT .............................. TGCATTGTTTAAAATATATAAATGGAGTGAAGGATC 1135490 30 100.0 40 GTGAAGGATC .............................. AGACAGACGACTATTCAGAATTTATAGATCTCTTCGACGA 1135560 30 100.0 37 TCTTCGACGA .............................. TTGATTTATTACTTCTATTATATCCTCAGCTAATTTC 1135627 30 100.0 36 AGCTAATTTC .............................. AGGACTTCTGTAATCTACATAACTTAATTCAATAAC 1135693 30 100.0 34 ATTCAATAAC .............................. ATAACTGATCTTACTAAAAATATAAGAGAAGAGA 1135757 30 100.0 36 AGAGAAGAGA .............................. ATAAATAAGTATTTTCTATATGATGCTAACGAAAGA 1135823 30 100.0 TAACGAAAGA .............................. AGGGCAATCT ========== ====== ====== ====== ========== ============================== 18 30 37 GTTTCCATCACGATCCGTGCTGATTTTAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-3.20,-3.20] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [80.0-78.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [99,400] Score: 0.18/0.18 # # Final direction: R [0,0.18 Confidence: MEDIUM] >NC_013407 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1101874 29 93.1 37 TTTTTATATC -.......A.................... CAAAGCTGTCGAAATAGTTGCACACATAAAAGGTTCT 1101940 29 100.0 43 AAAAGGTTCT ............................. AATAATCCTCCTTGGATTTGTAGTCGTGATGACGTGTTGTAAT 1102012 29 100.0 41 GTGTTGTAAT ............................. TATTATTTTCTGTAATCAGAGACCATCTTCCTGAGTTATAT 1102082 29 100.0 39 TGAGTTATAT ............................. AAAGTTTTAGAGCTGAATCCAAGCATGATTCAAGCATAT 1102150 29 100.0 41 TCAAGCATAT ............................. AGAAGCGTTAAAAGAGATTTCAAAAGCATTTAAGAAGTTTC 1102220 29 100.0 41 AAGAAGTTTC ............................. TTAATACAGTAAGGGCAACATATAACAGCTCAGCAACCAAC 1102290 29 100.0 41 AGCAACCAAC ............................. TTAATACAGTAAGGGCAACATATAACAGCTCAGCAACCAAC 1102360 29 100.0 41 AGCAACCAAC ............................. TTAATACAGTAAGGGCAACATATAACAGCTCAGCAACCAAC 1102430 29 100.0 39 AGCAACCAAC ............................. TTTTTTAATAATGCATCTGAATACTCGCTTGATGTTTTC 1102498 29 100.0 37 TGATGTTTTC ............................. TAAATAGTAATTGCTGTGATATTAATCAACATAATGC 1102564 29 100.0 AACATAATGC ............................. AGAATAATTTT ========== ====== ====== ====== ========== ============================= 11 29 40 TTCCATCCTCGAAGAGGTCTGATTTTAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.07%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.60,-3.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [78.3-86.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [199,480] Score: 0.18/0.18 # # Final direction: R [0,1.23 Confidence: HIGH] >NC_013407 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================ ====== 1372553 16 100.0 55 AAAATTACCC ................ AGTCGTGATGGAAACCCTGTTATACAAGATTTTTACGAATTATCAGTAAATACAT 1372624 16 100.0 55 GTAAATACAT ................ GATCGTGATGGAAACACAATTAGACAAGCACAGCAACAAAATATGATGTATCAGC 1372695 16 93.8 54 ATGTATCAGC A............... GATCGTGATGGAAACGAGATACTTACAACAATAAAAGGAAGGAATAACTATCCT 1372765 16 100.0 54 TAACTATCCT ................ GATCGTGATGGAAACATAAACGAAGATGCAAAGAGAAATATGATTTACGGATTT 1372835 16 100.0 49 TTACGGATTT ................ GATCGTGATGGAAACGAATCAATAAGATTAGCTAAGGTATCCAACAAAT 1372900 16 100.0 53 TCCAACAAAT ................ GATCGTGATGGAAACCCAATATTCACTGTGGTATTTATGTTTTGATAATTATA 1372969 16 100.0 GATAATTATA ................ ATTCGTGATGG ========== ====== ====== ====== ========== ================ 7 16 53 TATTAAAATCAGCACG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.75%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [80.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [343,581] Score: 0/0.18 # # Final direction: F [0.27,0 Confidence: MEDIUM] >NC_013407 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1403067 30 100.0 42 AATTTTGAAG .............................. GAGTATAGTGTAGTTGATGCTGATGTTTATATAACTGCAAAA 1403139 30 100.0 34 AACTGCAAAA .............................. CCACATAGCTGTATTATTATCAATCCAGTATGAA 1403203 30 100.0 37 CCAGTATGAA .............................. TTTCAGAATGTATTAATTATATTAGGTGGTAAAAAAA 1403270 30 100.0 41 GGTAAAAAAA .............................. TTTATATCTGATAAGTCATTGGATTATGAGTCAATATTATC 1403341 30 100.0 38 CAATATTATC .............................. ATTAAACAGATAATCAAAGAATTAAGAGAATTTATGGC 1403409 30 100.0 AATTTATGGC .............................. AGGGTAATTTT ========== ====== ====== ====== ========== ============================== 6 30 38 TTTCCATCCTCGAAGAGGTCTGATTTTAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.60,-3.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [83.3-81.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [352,378] Score: 0/0.18 # # Final direction: R [0,0.37 Confidence: MEDIUM] >NC_013407 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1708465 30 86.7 37 AGTAAAATTC -..........A.C.T.............. TTATTCGAACCCCAACCAAATGGATCGTTTATTTTAA 1708532 30 100.0 35 TTTATTTTAA .............................. GCTGTTGTCTCCAACGACTTTGACGGGGAACCCTT 1708597 30 100.0 38 GGGAACCCTT .............................. CTTCCTTTTTAAATCACTTATTTTAATCTGTTCTATGT 1708665 30 100.0 43 TGTTCTATGT .............................. CATTGTGGTATTACTCCCTGGACCATAGCAGTGGCATGGTTCC 1708738 30 96.7 36 GCATGGTTCC .............C................ TTATTAATGTGTTCCAAGAATTTACATACTACAAAC 1708804 30 96.7 36 TACTACAAAC .............C................ TATTTGGAACTACATTAAAGGAGCAAATGTAATCTT 1708870 30 100.0 37 ATGTAATCTT .............................. TAGAACTTTTACAAGATATAAAACCATATAAGCATCA 1708937 30 100.0 36 ATAAGCATCA .............................. TAATAGGGAAGTACCGTGAGGGAACGGGTGGGGCTG 1709003 30 100.0 39 GGTGGGGCTG .............................. ATAAAACAATCGAATACAACAAATTGATAAGAGAAATAG 1709072 30 100.0 45 AGAGAAATAG .............................. TGAAAACTGTGTAGCAAAAGAAAAAAGCTTTAATGAATTTGATAA 1709147 30 100.0 37 AATTTGATAA .............................. TTGGAAATTTAACGCCACATAGTATAAATATTTTGGT 1709214 30 100.0 38 ATATTTTGGT .............................. TGTGGAGATTAAACACACTTGTGAATATTATCATGAGT 1709282 30 100.0 42 TATCATGAGT .............................. TTTTAATAATAAATTCCTCTGTATAAATAATCTTTTTCTAAC 1709354 30 100.0 36 TTTTTCTAAC .............................. TAAAATAAAAAAAATAAAAAGGTGGTAGAATGAATA 1709420 30 100.0 AGAATGAATA .............................. AGGATAATTT ========== ====== ====== ====== ========== ============================== 15 30 38 GTTTCCATCACGATCCGTGCTGATTTTAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-3.20,-3.20] Score: 0/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [68.3-86.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [289,369] Score: 0/0.18 # # Final direction: R [0,0.68 Confidence: HIGH] >NC_013407 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 293401 30 96.7 35 AAATTACCCT ..............A............... TATAACTAAAAGTTGGATTATGGTATCCTCTTGCA 293466 30 96.7 41 TCCTCTTGCA ..............A............... TTATTATTACCTATTCTAATACAGTATGATGTTTTAGTATC 293537 30 96.7 41 TTTTAGTATC ..............A............... TAATTTACTCCCAGCATTGTTCTGATTGCAAAATGTGTTTT 293608 30 96.7 42 AATGTGTTTT ..............A............... TCACGATGAGATATGGAGCAAAATTTATCTTTTTTATATTTT 293680 30 96.7 36 TTTATATTTT ..............A............... TTTACTTAATCGTCTTAATGCCTCTTCAACTTCTCT 293746 30 96.7 33 CAACTTCTCT ..............A............... TTCTCTTTTTTATCCAAATAATCTTTTAGCATT 293809 30 100.0 38 TTTTAGCATT .............................. AACTATCAACTGAATTATATTGGGTATATAGACGAGTG 293877 30 100.0 36 TAGACGAGTG .............................. AAATAACTAAAAGATCGGAAAGAGAAGTTGAAGAGG 293943 30 100.0 40 GTTGAAGAGG .............................. TCAATAGACGATATTATAAACAACAGCAATCAAACAGCAA 294013 30 100.0 36 CAAACAGCAA .............................. TTGATAATGATGATAGGAGTTTGTTAAATGTAGATG 294079 30 100.0 40 AATGTAGATG .............................. TTTATATTGTTTCTTTCACAATACACACAATTATCAGTCG 294149 30 100.0 37 TTATCAGTCG .............................. AACAACTGCTGCTTTTATTCCATTTTTTTCAATTACT 294216 30 100.0 37 TTCAATTACT .............................. CGCAGATAGATTTGTATTAATGTCAGCAACAATATCA 294283 30 100.0 35 AACAATATCA .............................. TCCAATATGTAAAACTCTGTTAAGTTTGTTAAATC 294348 30 100.0 37 TTGTTAAATC .............................. CTAAAACAAACTCTTTCCCAACTAACTTTTCAGCAAA 294415 30 96.7 TTTCAGCAAA ........................A..... CTACCAAAAT ========== ====== ====== ====== ========== ============================== 16 30 37 ATTAAAATCAGCACGGATCGTGATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-3.20,-3.20] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [81.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [440,274] Score: 0/0.18 # # Final direction: F [0.68,0 Confidence: HIGH] >NC_013407 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1714177 29 100.0 35 TGAATGTAGG ............................. TTTTCGATTTTCAATTTCAACATAAATCTTTTTGA 1714241 29 100.0 51 ATCTTTTTGA ............................. TAGAGACAATATGAAGCCAATTAATGTCAGCATTATTGATGACTACAAAAA 1714321 29 100.0 41 ACTACAAAAA ............................. TTAATTTTACAGACGCATAAATTTATCTTTTTTAGCGAAGA 1714391 29 100.0 42 TTAGCGAAGA ............................. GAGGGATGTTATAAGACAAAGCATAAGGGATGCTATAAGAGA 1714462 29 100.0 36 CTATAAGAGA ............................. TTGTGAACAATGTAGAGAATGTTGGTACGAAAGTCA 1714527 29 100.0 40 ACGAAAGTCA ............................. TTTTAGTGATAAAATGAAGGATATAAACGATATAATAAAG 1714596 29 100.0 42 TATAATAAAG ............................. GGAAAAAAATATCTAATACTTGACTATTCAACTTATGCTTTG 1714667 29 100.0 37 TTATGCTTTG ............................. CAGGACAGATGGTTGGTGGTTGGAGTAATTATAGGAG 1714733 29 100.0 ATTATAGGAG ............................. AGGGTAATTT ========== ====== ====== ====== ========== ============================= 9 29 40 TTTCCATCACGACTCGTGCTGATTTTAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.07%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.70,-2.70] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [66.7-85.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [893,498] Score: 0/0.18 # # Final direction: R [0,0.27 Confidence: MEDIUM] >NC_013407 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 299709 30 93.3 41 TTTTTATATC --............................ TTCAGATGCATTATTAAAAAAACTTCCAGTAATTTACAAAG 299780 30 100.0 34 ATTTACAAAG .............................. ATATTCTTTTATTAATCTCTTCCATTAATTCTAT 299844 30 100.0 46 TTAATTCTAT .............................. GAGGATGAAGACACTTTGGAAGAATGGTTTAAAAGGGCTAAGAGAT 299920 30 100.0 33 GCTAAGAGAT .............................. GGCTCACAGGCAGTTATAACCGTAACATATACA 299983 30 100.0 36 AACATATACA .............................. TTAGCTTAGCATCAATAACTTTTAAGATAATTTGTA 300049 30 100.0 35 ATAATTTGTA .............................. TTGATATTGTTATGCAAATATATAACACAACAGAA 300114 30 100.0 42 CACAACAGAA .............................. GGATTAGTTGAACAGTATTTCTACCCAAACTCAATTTATAGA 300186 30 100.0 39 AATTTATAGA .............................. CAAGTATTTTTTTAGAACTTAATAAAAAGGAACTAACCC 300255 30 100.0 GAACTAACCC .............................. AGGGTAATTT ========== ====== ====== ====== ========== ============================== 9 30 38 TTTCCATCCTCGAAGAGGTCTGATTTTAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.60,-3.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [78.3-80.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [286,396] Score: 0/0.18 # # Final direction: R [0,0.78 Confidence: HIGH] >NC_013407 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 3 30 100.0 36 CT .............................. TATTGAGATAACAGTTTTAAAATCAATTTATCTTTA 69 30 100.0 36 TTTATCTTTA .............................. ATATACTCCCTTGTGTTATTCAAATTAAAAGGTTTA 135 30 100.0 40 AAAAGGTTTA .............................. GTATTCTAATATCTTATTTATTATCTCTTTATTACATTAA 205 30 100.0 35 ATTACATTAA .............................. GCATTTAACGCAAAAGGAGTGCAGCTATATTGCAA 270 30 100.0 36 TATATTGCAA .............................. ATGCTATCATCTAAAAATGTTTCTAATATTTCTCTA 336 30 100.0 36 TATTTCTCTA .............................. TTAATGAGATTATCAATATTAATCTCTGATTTTTTA 402 30 96.7 37 TGATTTTTTA ................G............. AGTGTTGATATCCAATTTAAGTTTAAGCCTCCAAAAT 469 30 96.7 40 CCTCCAAAAT ................G............. CTAACTGGCTTCAAAACCAAAATATTCTCTTTATTAGCTA 539 30 96.7 TTATTAGCTA ................G............. TGAATAACTT ========== ====== ====== ====== ========== ============================== 9 30 37 ATTAAAATCAGCACGGATCGTGATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-3.20,-3.20] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [81.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [4,180] Score: 0.18/0.18 # # Final direction: F [0.27,0.18 Confidence: LOW] >NC_013407 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 443269 29 100.0 34 TGAGAGTTAA ............................. CAGAAAATGACATAGTAATAGTGTCATTATTAGC 443332 29 93.1 43 CATTATTAGC .............CT.............. TTTTTTAGCTTATATTGATTTTTGTAGATAGTAAATTTTATAA 443404 29 93.1 34 AATTTTATAA .............CT.............. TCAACATTTAGAATTGGACGACTACGAATTAAAA 443467 29 93.1 36 CGAATTAAAA A............C............... TATTAAAATATTTGAAAGATTTTTTTAAGACATATG 443532 29 100.0 39 AAGACATATG ............................. TAAAATCAACTTTTTTCCATAAATCCTACCCAAATTATT 443600 29 100.0 38 CCAAATTATT ............................. TTCGTTAAATCTATCATATTCTCACATTACCTATTTTA 443667 29 100.0 37 ACCTATTTTA ............................. TTCTTAATTTGTAAAATCCTTGTGCGGTTATGAAGTA 443733 29 100.0 37 TTATGAAGTA ............................. TTATAATTTGCATACATAATCTAATTAATATCTTATT 443799 29 100.0 37 ATATCTTATT ............................. TTCCCTAAATGGACAAGATATTGCTTTTGTATTATGT 443865 29 100.0 37 TGTATTATGT ............................. TCGATCCCCGACTAAATGAATTACGTATTAGAGTAAA 443931 29 100.0 43 TTAGAGTAAA ............................. TAATAATATATGAATATAGGTTCGATTATTACAACCCCGAGAG 444003 29 100.0 37 ACCCCGAGAG ............................. TCGAGCCCCGAATGAACGAAATAAATATTAGAGCAAG 444069 29 100.0 37 TTAGAGCAAG ............................. TGGGAGGTAAATATCTTGAAGAACTTATCAGAAAATA 444135 29 100.0 37 TCAGAAAATA ............................. TAGAAAAAATACCCTGTTGATCCAACTGAGTATGTAA 444201 29 100.0 GAGTATGTAA ............................. TAGGGTAATT ========== ====== ====== ====== ========== ============================= 15 29 37 GTTTCCATCACGATCCGTGCTGATTTTAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.62%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-3.20,-3.20] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [70.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [293,373] Score: 0/0.18 # # Final direction: R [0,0.68 Confidence: HIGH] >NC_013407 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 450018 30 100.0 21 NNNNNNNNNN ....TT...C.TTAGA.G............ TCTAAAAATTGATTTTAATAT 450069 30 100.0 40 NNNNNNNNNN C...TT........................ AGAAATAAAAAGTTTATTAAGGGATAATGGATATAAACTA 450139 30 100.0 37 NNNNNNNNNN .............................. AAACGTCATCTAACCATAAAGATGCGTTTCTAATCTT 450206 30 100.0 54 NNNNNNNNNN .............................. TATTGTCTTTTTTGTATAATTGTATTTTACGAGATCATCTATATCGAGATCTTT 450290 30 100.0 37 NNNNNNNNNN .............................. CTCTTTTAGGAACTTCTTTATATGCTCATTTTGATAA 450357 30 100.0 40 NNNNNNNNNN .............................. TTAATCATTTTGTTTAACTCTCTCTGTCCATATTTTCAGT 450427 30 100.0 35 NNNNNNNNNN .............................. ATTTTCACAAAAAAACAAGATGGATACATAACGAT 450492 30 100.0 40 NNNNNNNNNN .............................. TAATCCAGCAAACCCTAACACTTTGAAGCAACAAGCCAAC 450562 30 100.0 43 NNNNNNNNNN .............................. ATTTATTAATATTTCGCATAATATCCCTCCTACTGTGTTATTA 450635 30 100.0 40 NNNNNNNNNN .............................. TACTGACCCCCTCTATGCAGATATGGTAATGGATGAAATA 450705 30 100.0 35 NNNNNNNNNN .............................. TTGTTCATCCGTTATATATGTATCCTTTATTACTA 450770 30 100.0 38 NNNNNNNNNN .............................. AACAACAACTTGAACAGTTAATTGATGCAGTTAATAAT 450838 30 100.0 40 NNNNNNNNNN .............................. TAATCCAGCAAACCCTAACACTTTGAAGCAACAAGCCAAC 450908 30 100.0 43 NNNNNNNNNN .............................. ATTTATTAATATTTCGCATAATATCCCTCCTACTGTGTTATTA 450981 30 100.0 40 NNNNNNNNNN .............................. TACTGACCCCCTCTATGCAGATATGGTAATGGATGAAATA 451051 30 100.0 35 NNNNNNNNNN .............................. TTGTTCATCCGTTATATATGTATCCTTTATTACTA 451116 30 100.0 38 NNNNNNNNNN .............................. AACAACAACTTGAACAGTTAATTGATGCAGTTAATAAT 451184 30 100.0 40 NNNNNNNNNN .............................. TAATCCAGCAAACCCTAACACTTTGAAGCAACAAGCCAAC 451254 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 19 30 38 GTTTCCATCACGACCCGTGCTGATTTTAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-3.20,-3.20] Score: 0/0.37 # Array degeneracy analysis suggestion: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [103,510] Score: 0.18/0.18 # # Final direction: R [0,0.59 Confidence: HIGH] >NC_013407 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 590203 30 100.0 39 AAATTATCCT .............................. CGGACACACAACCAACGGCGGGTTCGGAGTAGGCGGATA 590272 30 100.0 38 TAGGCGGATA .............................. CAGGATAACCTCATTGAGGGACCCCTTGGGTGTGATGT 590340 30 100.0 36 GGTGTGATGT .............................. CTAAATAATTATATTTATTTATTCGAGAGATCTTCT 590406 30 100.0 36 GAGATCTTCT .............................. TGATTCTTGTTGTTACTTCACCATACAACTCTTTTA 590472 30 100.0 37 AACTCTTTTA .............................. AATCATTTATTTAAAAACATAAAAAATTATATAAAAA 590539 30 100.0 TATATAAAAA .............................. TGTTTTAGAAATGCTTCTTTTGCTTCTAACCTGCA ========== ====== ====== ====== ========== ============================== 6 30 37 ATTAAAATCAGCACGGATCGTGATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-3.20,-3.20] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [88.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [609,282] Score: 0.18/0.18 # # Final direction: F [0.45,0 Confidence: MEDIUM] >NC_013407 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 743131 30 100.0 42 NNNNNNNNNN .............................. TCTTTTTCATCTATCTCTTTATACTGTATTAATACTGACTCA 743203 30 100.0 43 NNNNNNNNNN .............................. TGAGGAAATTAAAATACAGTTAGCTGTTCAGAATGATAACATA 743276 30 100.0 37 NNNNNNNNNN .............................. GTTTATATCAAATACTGATGATACTGATACTGCTGGT 743343 30 100.0 39 NNNNNNNNNN .............................. TATGTGTTAAGGTTTCCAAAGCAGTATGTTAAATACGGT 743412 30 100.0 41 NNNNNNNNNN .............................. TGGTTTAGTAAAAATGGGAGAAGAAGGAATCGATTTCCCAA 743483 30 100.0 35 NNNNNNNNNN .............................. CATTGACATCATGTTTGAGAGTAAATTCTGAGGGT 743548 30 100.0 34 NNNNNNNNNN .............................. TATGCAAGATATTCTTTATTATTGATAAAAGATC 743612 30 100.0 35 NNNNNNNNNN .............................. CTGGTTCATTTTTTTAAGGAATTTTTAAAAATTTA 743677 30 100.0 36 NNNNNNNNNN .............................. ATAAGCGTATTTGAGTTTTATGATGATGCTACAGCA 743743 30 100.0 33 NNNNNNNNNN .............................. CTTTTATACCGTTTGCGAGTGAATACCTTTCGC 743806 30 100.0 33 NNNNNNNNNN .............................. AGAGCCATTGCCCCGAATTTTTGTAGTGGAAGT 743869 30 100.0 35 NNNNNNNNNN .............................. TAGATTAACAAGAAAATTAAGAAATATGGGATTGA 743934 30 100.0 42 NNNNNNNNNN .............................. TGAAATAGCAATAGATTCACAAAACACAGTATTTATATATTA 744006 30 100.0 34 NNNNNNNNNN ...............GA............. TGAGATCAGGGGCAAAACTATTTATCTTTTTTAT 744070 30 100.0 39 NNNNNNNNNN ...............GA............. TTGATTGCATCATTTCCATCGGATTCTGTGTTGTTTCAA 744139 30 100.0 36 NNNNNNNNNN ...............GA............. ACATCAAGATTAACTGAAGAGGAAGTTAATGTTGAA 744205 30 100.0 36 NNNNNNNNNN ...............GA............. ACATCAAGATTAACTGAAGAGGAAGTTAATGTTGAA 744271 30 100.0 34 NNNNNNNNNN ...............GA............. ACATCAGATATATACTTATTATACCACTGTGTTA 744335 30 100.0 39 NNNNNNNNNN ...............GA............. TACCGTAATCTACTCCGAAGTATTTGCATAATTCACTGT 744404 30 100.0 34 NNNNNNNNNN ...............GA............. ACATCAGATATATACTTATTATACCACTGTGTTA 744468 30 100.0 39 NNNNNNNNNN ...............GA............. TACCGTAATCTACTCCGAAGTATTTGCATAATTCACTGT 744537 30 100.0 36 NNNNNNNNNN ...............GA............. ACTTTTGAATTTACTTAATGATGGATGGAGATCTGC 744603 30 100.0 41 NNNNNNNNNN ...............GA............. ATTTTATTTAGTTCTTCAACAACTCTTACAAGTTCATCAAC 744674 30 100.0 36 NNNNNNNNNN ...............GA............. TTATGATAATTACCCTATAAATGCATTGTTAAAAAT 744740 30 100.0 37 NNNNNNNNNN .............................. CTTTGTTAGAGGAAAGTAAGTTATCAGCTTGTTATAC 744807 30 100.0 38 NNNNNNNNNN ...............GA............. AAGAATACTCCTGCACTGCTATAAACTTGTTTAGTCCA 744875 30 100.0 1 NNNNNNNNNN ...............TC.T..A..AA...A NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 27 30 37 ATTAAAATCAGCACGAGTCGTGATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-3.20,-3.20] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [80.0-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [443,231] Score: 0/0.18 # # Final direction: F [0.41,0 Confidence: MEDIUM] >NC_013407 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 764052 30 100.0 44 TGCACTTCCT .............................. TTACATATACTTCGTTCAATCGGGGCTCGTGCCCCATCACAATG 764126 30 100.0 39 CATCACAATG .............................. TCCCTACGAGGGCTGATTTTAACTAAAAAAAAATTAAAA 764195 30 100.0 38 AAAATTAAAA .............................. ACATAGAACAGATTAAAATAAGTGATTTAAAAAGGAAG 764263 30 100.0 38 AAAAAGGAAG .............................. ACATAGAACAGATTAAAATAAGTGATTTAAAAAGGAAG 764331 30 100.0 38 AAAAAGGAAG .............................. ACATAGAACAGATTAAAATAAGTGATTTAAAAAGGAAG 764399 30 100.0 38 AAAAAGGAAG .............................. ACATAGAACAGATTAAAATAAGTGATTTAAAAAGGAAG 764467 30 100.0 35 AAAAAGGAAG .............................. AAGGGTTCCCCGTCAAAGTCGTTGGAGACAACAGC 764532 30 100.0 AGACAACAGC .............................. TTAAAATAAAC ========== ====== ====== ====== ========== ============================== 8 30 38 ATTAAAATCAGCACGGATCGTGATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-3.20,-3.20] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [46,249] Score: 0.18/0.18 # # Final direction: R [0,0.45 Confidence: MEDIUM] >NC_013407 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 763639 30 100.0 34 ATCAATATCA .............................. TTTTTAACATATTTAGATACAGTAGCTAATATCC 763703 30 100.0 35 GCTAATATCC .............................. AAACTTTTTTGGCTTGTTTTATAACCAACTCCATT 763768 30 100.0 36 CAACTCCATT .............................. AAGTTCATTATATCTCTGAACTGCACTTTACTGGCT 763834 30 100.0 41 TTTACTGGCT .............................. TACGGTTCTATCACATAATACATATTCAATGTTTGATAAAA 763905 30 100.0 43 TTTGATAAAA .............................. ATACATCACAGGAGTAGAATTTAGTAAAGCAGATAGATCATTA 763978 30 100.0 TAGATCATTA .............................. CACATTTTAC ========== ====== ====== ====== ========== ============================== 6 30 37 ATTAAAATCAGCACGGATCGTGATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-3.20,-3.20] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [617,46] Score: 0.18/0.18 # # Final direction: F [0.45,0 Confidence: MEDIUM] >NC_013410 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================================ ====== 165662 48 100.0 29 CAACGAATCA ................................................ GCATATCTGAATAAACTAAACAACAAAAA 165739 48 100.0 30 ACAACAAAAA ................................................ TATTTTCAGTGTAGGTCATGATTTACCCCA 165817 48 100.0 30 ATTTACCCCA ................................................ TGTAGTTAATACCATTATCGCTAAAATCAA 165895 48 100.0 29 CTAAAATCAA ................................................ AATAATACTTTGCAATTGTCAATAGAAAA 165972 48 100.0 30 CAATAGAAAA ................................................ AGCATTTGGAATTTCTTTGAGTTGTGTTTC 166050 48 100.0 30 GTTGTGTTTC ................................................ TAATTTGATTCGCAATTGCACCGCTAGACG 166128 48 100.0 30 CCGCTAGACG ................................................ TAGATATTTTTGACAATTTGGATTGTATCT 166206 48 100.0 GATTGTATCT ................................................ TTTCTTTTGTGTAGTTCATGGTTTTATCCTGTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAACAGGTCTGCTGGTCTTCCGGGAAGAGCATCTGTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAACGGAACGCGCACCGTTTGACGCAAAGAAAGGTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAACAAAGTTTCTCCCAATAAACGCTACAAAGAGTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAACGCTGGCCCTCTTGGTGCTATGGCCGCAGGCGTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAACGCAAGTATGGTAATATGTATGACCACGGCGGTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAACAGTATTCGGACTATATCGGGCGGGCTCGTTGTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAACTACAAAGATAGGATGTTGCATATTTATTAAGTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAACTTAATTTCGTCCACACCGTCAAACCTAAACGTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAACAGAAGAGCGAGTTCACGCCGTTGTGGGTTGTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAACGCTACTGTGCAGTCATTACAAGACCGCGTTGTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAACTGGTGTGAGTCTTGGTTCTCGCTTCGCTCGTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAACGCTACTGTGCAGTCATTACAAGACCGCGTTGTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAACTGGTGTGAGTCTTGGTTCTCGCTTCGCTCGTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAACGATTAACGTTACAATCCTCCACCTTTCCTTGTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAACGGGTTGAGTGGTCCAGCTTGTTATCTACTGTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAACGGAAGGCGATACGGATAAGTTGAACGAAAGTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAACAGTATCATGGCAATATTCTTTCGGGGCATTGTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAACGCTCAGCAGCACGAAATTACTAATAGTCCTGTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAACTATCGACTTGCGACAACGAAGCTCTTGATGTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAACAATCTGTAAGCACTATTGGAAATATGGTCTGTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAACTGCTTGACGAAGTTGGCAATGAATGGTACAGTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAACTAAAATCCCGACGTATGTATTCATCGACG ========== ====== ====== ====== ========== ================================================ 8 48 29 GTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.75%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-3.90,-3.90] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [104,2229] Score: 0.18/0.18 # # Final direction: R [0,0.18 Confidence: MEDIUM] >NC_013407 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 886913 30 100.0 39 NNNNNNNNNN T...TT.......CT............... TCAAATATTACCGACGAATTTGAAAAATTATTGCAAAAG 886982 30 100.0 36 NNNNNNNNNN .............................. AAACAAACAAGTATCACATGATTTAATTTTAACAGA 887048 30 100.0 35 NNNNNNNNNN .............................. TTTGTTCTTCTCTTCATCTAATTTGTAAATTGCAT 887113 30 100.0 35 NNNNNNNNNN .............................. TTTGTTCTTCTCTTCATCTAATTTGTAAATTGCAT 887178 30 100.0 35 NNNNNNNNNN .............................. TTTGTTCTTCTCTTCATCTAATTTGTAAATTGCAT 887243 30 100.0 37 NNNNNNNNNN .............................. GAATTCTTGCTCCCCCTATTTTTACTCGTTTTTCTTT 887310 30 100.0 38 NNNNNNNNNN .............................. TCATTAATACTAAACTTATAATTGTCAAGTATATATTT 887378 30 100.0 44 NNNNNNNNNN .............................. TAATTTAATAATATTAAAGTGTATGACAATAATATAGTAATCTA 887452 30 100.0 39 NNNNNNNNNN .............................. TTAATCATCACTTTATATTTTTTACCACATACTTCAACA 887521 30 100.0 34 NNNNNNNNNN .............................. TTACCTATAAGACCATATGATAAACATCATCTAC 887585 30 100.0 37 NNNNNNNNNN .............................. CTCATAACACTATTTTTGTAAAATAGATGATATTAAT 887652 30 100.0 40 NNNNNNNNNN .............................. TATATAAGCAAAGACAGATAACATTTGCAACATATATGAG 887722 30 100.0 38 NNNNNNNNNN .............................. CGTTAGATGGGTTTATTTTTAGAAATTTTCTGCACCAT 887790 30 100.0 36 NNNNNNNNNN .............................. AAATAAGACACAAAATAAATACACTGACTTAGCAGT 887856 30 100.0 34 NNNNNNNNNN .............................. GAAATATTATGAATATAGATGAGATACTAAAAAA 887920 30 100.0 42 NNNNNNNNNN .............................. TAGTAAATATGTGAAATGGTATAAACGTGAAAAAGAAAACGG 887992 30 100.0 36 NNNNNNNNNN .............................. TCCATCCATCCGTCAACTATTTCTTCGGCTGATCTT 888058 30 100.0 36 NNNNNNNNNN .............................. AGTGAATACAACAGTATTAAAACTACAATTTAATAG 888124 30 100.0 41 NNNNNNNNNN .............................. AGGGATTATAGGATAAAATATACGTTATGTTATTTTAGAAG 888195 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 20 30 37 GTTTCCATCACGATCCGTGCTGATTTTAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-3.20,-3.20] Score: 0/0.37 # Array degeneracy analysis suggestion: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [166,316] Score: 0/0.18 # # Final direction: R [0,0.41 Confidence: MEDIUM] >NC_013410 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================================ ====== 166284 48 100.0 30 GTTTTATCCT ................................................ AGGTCTGCTGGTCTTCCGGGAAGAGCATCT 166362 48 100.0 29 AAGAGCATCT ................................................ GGAACGCGCACCGTTTGACGCAAAGAAAG 166439 48 100.0 29 GCAAAGAAAG ................................................ AAAGTTTCTCCCAATAAACGCTACAAAGA 166516 48 100.0 30 GCTACAAAGA ................................................ GCTGGCCCTCTTGGTGCTATGGCCGCAGGC 166594 48 100.0 30 GGCCGCAGGC ................................................ GCAAGTATGGTAATATGTATGACCACGGCG 166672 48 100.0 30 GACCACGGCG ................................................ AGTATTCGGACTATATCGGGCGGGCTCGTT 166750 48 100.0 30 CGGGCTCGTT ................................................ TACAAAGATAGGATGTTGCATATTTATTAA 166828 48 100.0 30 TATTTATTAA ................................................ TTAATTTCGTCCACACCGTCAAACCTAAAC 166906 48 100.0 29 AAACCTAAAC ................................................ AGAAGAGCGAGTTCACGCCGTTGTGGGTT 166983 48 100.0 30 GTTGTGGGTT ................................................ GCTACTGTGCAGTCATTACAAGACCGCGTT 167061 48 100.0 29 AGACCGCGTT ................................................ TGGTGTGAGTCTTGGTTCTCGCTTCGCTC 167138 48 100.0 30 CGCTTCGCTC ................................................ GCTACTGTGCAGTCATTACAAGACCGCGTT 167216 48 100.0 29 AGACCGCGTT ................................................ TGGTGTGAGTCTTGGTTCTCGCTTCGCTC 167293 48 100.0 30 CGCTTCGCTC ................................................ GATTAACGTTACAATCCTCCACCTTTCCTT 167371 48 100.0 29 ACCTTTCCTT ................................................ GGGTTGAGTGGTCCAGCTTGTTATCTACT 167448 48 100.0 29 GTTATCTACT ................................................ GGAAGGCGATACGGATAAGTTGAACGAAA 167525 48 100.0 30 TTGAACGAAA ................................................ AGTATCATGGCAATATTCTTTCGGGGCATT 167603 48 100.0 30 TCGGGGCATT ................................................ GCTCAGCAGCACGAAATTACTAATAGTCCT 167681 48 100.0 29 TAATAGTCCT ................................................ TATCGACTTGCGACAACGAAGCTCTTGAT 167758 48 100.0 30 AGCTCTTGAT ................................................ AATCTGTAAGCACTATTGGAAATATGGTCT 167836 48 100.0 30 AATATGGTCT ................................................ TGCTTGACGAAGTTGGCAATGAATGGTACA 167914 48 100.0 GAATGGTACA ................................................ TAAAATCCCGACGTATGTATTCATCGACG ========== ====== ====== ====== ========== ================================================ 22 48 29 GTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.75%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-3.90,-3.90] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [726,521] Score: 0/0.18 # # Final direction: NA [0,0 Confidence: NA] >NC_013410 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1895328 37 100.0 37 ATTAAAATAG ..................................... TTTCATATTGTTACCTCCTAGAATTTTTCTATTCCCT 1895402 37 100.0 37 TCTATTCCCT ..................................... TTTGCAATCTTTGCCATGATCTTGGTCTTAGTGTTTT 1895476 37 100.0 36 TTAGTGTTTT ..................................... AGAACACGCATTTCAGTATCGAGCCTTTCCTTGTCA 1895549 37 100.0 TTCCTTGTCA ..................................... CATCACTCAT ========== ====== ====== ====== ========== ===================================== 4 37 36 CCCTGAAAAGCATTACTCTCGCAAGAGAGATTAAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.20,-6.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [788,1243] Score: 0/0.18 # # Final direction: F [0.64,0 Confidence: HIGH] >NC_013410 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1902105 37 100.0 37 GAGGGGTACT ..................................... TCATTACGAGCCAGAGCTGTCATCGGGCCGAGGTTCC 1902179 37 100.0 36 CCGAGGTTCC ..................................... TTGAGTCTGATTCCATTTTCATAGAAGAGACTTTCG 1902252 37 100.0 37 GAGACTTTCG ..................................... GCACTTGATTTAAAGTTAACATTCTTTACAAATGCAA 1902326 37 100.0 36 ACAAATGCAA ..................................... TAACTCCTTCAGATCCTTTAAGAAGGAATTCTTTCC 1902399 37 100.0 37 AATTCTTTCC ..................................... TCCCCACATGCGGATCTTCTCATTGAGAAAATCGTCA 1902473 37 100.0 AAAATCGTCA ..................................... CCAGATGTAAA ========== ====== ====== ====== ========== ===================================== 6 37 36 CCCTGAAAAGCATTCCTCTCGCAAGAGAGATTAAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.05%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-6.70,-6.80] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [48.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [1417,1309] Score: 0/0.18 # # Final direction: R [0,0.27 Confidence: MEDIUM] >NC_013421 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 436573 30 100.0 32 TACTTTTAGA .............................. CAACATGCTGGGTTGTTCACACGCGACACGGC 436635 30 100.0 31 GCGACACGGC .............................. ATTTGATTCTATGAATCGCATCTCAGGGAAC 436696 30 100.0 31 CTCAGGGAAC .............................. TCTGATGTTGCGTGTGCTGGGATTTGATGTG 436757 30 100.0 ATTTGATGTG .............................. AAATGGCTAAG ========== ====== ====== ====== ========== ============================== 4 30 31 GTGTTCCCCGCGCCAGCGGGGATAAACCGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-13.40,-12.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [70.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [86,810] Score: 0.18/0.18 # # Final direction: F [1.51,0.18 Confidence: HIGH] >NC_013411 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1199373 30 100.0 38 TGGTTTGGGG .............................. AAATTCCAATTTTATTTTGAACGTCAGTGATTGCATTG 1199441 30 100.0 37 GATTGCATTG .............................. CTATGAACAGTATGGAACTAAATATGTGACATGGGGA 1199508 30 100.0 36 GACATGGGGA .............................. TACTACACATGTAGTACATTGTCAACATTCTTTTGA 1199574 30 100.0 35 ATTCTTTTGA .............................. GCCGCAAGCCATACGCGCCAGTACATCGACTTCGC 1199639 30 100.0 36 TCGACTTCGC .............................. CTCCCCTTATTGCCAGTCCGAATCAGTCGGACTGGC 1199705 30 100.0 37 TCGGACTGGC .............................. TTCCACCTCTAACAGCTCGGCCGGGATGATCCAAGGC 1199772 30 100.0 37 GATCCAAGGC .............................. AAAAATTTGCAAATCGTCCTGTAGAACATGTATTTAC 1199839 30 100.0 37 ATGTATTTAC .............................. TGCGCTAATCCTTTCGAAACGGTACCGGAGCAAATTC 1199906 30 100.0 36 GAGCAAATTC .............................. GGACAACTGTTCCTTTCTCTACTCTTTCTCTCCATC 1199972 30 100.0 36 TCTCTCCATC .............................. CTCTTAAAGAGTGGCGTGATGTTGACGTCCGCGTAC 1200038 30 100.0 35 GTCCGCGTAC .............................. ATGGAACGATCACGGTACATAATGATGATCGTCGC 1200103 30 100.0 36 TGATCGTCGC .............................. CTTGGTATAACAATGTCATGTCGTCTGTTGGTGTTT 1200169 30 100.0 36 GTTGGTGTTT .............................. TTGCACCCACTATTGACCGCCTCCAAGTAGTTTTCT 1200235 30 100.0 35 GTAGTTTTCT .............................. GTAGTAACAAGCTGTCTAAACTTGTCAGCATAATC 1200300 30 100.0 35 CAGCATAATC .............................. ACTAGCGTTCGGCAAGCTATCGAGATACCGTTTAA 1200365 30 100.0 37 TACCGTTTAA .............................. TCTACGCAATATAGCGCGTCCATAGCCTTTTCGATAG 1200432 30 100.0 36 TTTTCGATAG .............................. TATGACAAAATGGGTTAATATGGTGACAAAAGGAAA 1200498 30 100.0 37 CAAAAGGAAA .............................. CAGGGTTGAAATAATCTGTCATTGAATCGCTTTGGTC 1200565 30 100.0 38 CGCTTTGGTC .............................. CCCGACCCGTTTTTTATCATCGCTTCATGGAAACAGAG 1200633 30 100.0 37 GGAAACAGAG .............................. ATATATTAAAAGGCTAAAAATGGGCGCTCTGGGGCGC 1200700 30 100.0 38 TCTGGGGCGC .............................. TTTTTGAAGGTCGCGAATGTTTCTCGGAGGGGCATAAC 1200768 30 100.0 37 GGGGCATAAC .............................. TTTTTCTGCTCGATGTAAATATCCAAAAGCGGCGTTC 1200835 30 100.0 35 AGCGGCGTTC .............................. CAAGAGGCGATCGAGGACAAGGCTGAGAATATCGG 1200900 30 100.0 35 AGAATATCGG .............................. TCCAATCGCCCGCGTCGTTCCAATAGCCGCCGCTC 1200965 30 100.0 GCCGCCGCTC .............................. TCTGACCGCTGCTCCACTGATCGGTTTAATTGAGCCA ========== ====== ====== ====== ========== ============================== 25 30 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.80,-0.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [200,248] Score: 0/0.18 # # Final direction: F [5.37,0 Confidence: HIGH] >NC_013411 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1209768 30 100.0 35 GCATTTTTGG .............................. ATTTTTTGTTTCGGTTTCCCCTCGCGCTCCCCTTC 1209833 30 100.0 35 GCTCCCCTTC .............................. CGAACCATCCGCTCGAAGGTTGATCGGCTAATGCC 1209898 30 100.0 36 GGCTAATGCC .............................. TCAGGATAGAGAATGGTCACCTGCACAGGCTGGGTC 1209964 30 100.0 37 AGGCTGGGTC .............................. CCAATCTATTTCCAACGGTGGAATAGCATCGGTATTC 1210031 30 100.0 39 ATCGGTATTC .............................. ATGGGTATTGTCCCAATAAGTCGCCGAAACATAGTTCCC 1210100 30 100.0 36 CATAGTTCCC .............................. GCTTCACGATGATCCGGCCGACCACCCTACCGGCTC 1210166 30 100.0 38 CTACCGGCTC .............................. TAAAAGTGGCTTCCGGTTTATTCAAAATACTTTCCGGC 1210234 30 100.0 38 ACTTTCCGGC .............................. CCCGACATGTTCCGAAACTTTAACTCTGGGGCGTTGAC 1210302 30 100.0 39 GGGCGTTGAC .............................. TCGTTCGCACCACACCAAATGTAGTCGGCTTTTCGACGG 1210371 30 100.0 38 TTTTCGACGG .............................. AGACCATGACGCGAATTCAAGATTTGCGTTTGGCCTTG 1210439 30 100.0 37 TTTGGCCTTG .............................. CCTTCAGGAAGATTGATAGCATTATCCGTATTATTGA 1210506 30 100.0 35 GTATTATTGA .............................. AAGGTTTAATCGAAGGTATGAAGGCGATGACCGGA 1210571 30 100.0 36 GATGACCGGA .............................. AAAAACCTTTTCTTCCTTTTTGAAAGGCTTACAAAA 1210637 30 100.0 38 GCTTACAAAA .............................. TCCCCAAGCGCAATGAGTTTGGTAAAGTCCTCGCTGCG 1210705 30 100.0 36 CCTCGCTGCG .............................. TTTATTGACGGTCTTTTTTGCTTCTTTTGCAGCTTG 1210771 30 100.0 39 TTGCAGCTTG .............................. TTTTTCATACAGCCTTGCCAGTTCTCTACGCACTTCATT 1210840 30 100.0 38 GCACTTCATT .............................. TCCCCAAGCGCAATGAGTTTGGTAAAGTCCTCGCTGCG 1210908 30 100.0 36 CCTCGCTGCG .............................. TTTATTGACGGTCTTTTTTGCTTCTTTTGCAGCTTG 1210974 30 100.0 39 TTGCAGCTTG .............................. TTTTTCATACAGCCTTGCCAGTTCTCTACGCACTTCATT 1211043 30 100.0 38 GCACTTCATT .............................. TCCCCAAGCGCAATGAGTTTGGTAAAGTCCTCGCTGCG 1211111 30 100.0 38 CCTCGCTGCG .............................. TTCAAGACTTCCTCCGGAGAGCTATCCGGAGAAGCAGC 1211179 30 100.0 36 GAGAAGCAGC .............................. ACAATACGGCTAAATTCATCTTCGCAGCCAACCACG 1211245 30 100.0 36 GCCAACCACG .............................. AGGTGACCATTGATAAAAAAGAAACAGAAAAACTTC 1211311 30 100.0 36 GAAAAACTTC .............................. GGCGGCACGATTGCGATCAACATCCAAAACATGACC 1211377 30 100.0 35 AAACATGACC .............................. ATCTTTTCGGTGATTGTACTCATCGTTCCGTCTGT 1211442 30 100.0 37 TTCCGTCTGT .............................. CAATATTCCAGCAATAGGTGACGTTCCAATCGAGACA 1211509 30 100.0 37 AATCGAGACA .............................. CCAGTTCGACCCGTTCCACCACTCATATAAATAAATC 1211576 30 100.0 36 TAAATAAATC .............................. GGGGATGGGACGACCACCAACCGAACCACGCCTGTC 1211642 30 100.0 39 CACGCCTGTC .............................. ACGACGATTGCCAAAGAATCGCCAGAACACTCACAGGCA 1211711 30 100.0 35 CTCACAGGCA .............................. TTCAGAATGAGTCCTGTCACGGTATACCCATTTTT 1211776 30 100.0 37 ACCCATTTTT .............................. AAAATATGACGTTCGATCAATGGAAAAAGGAGCGGTT 1211843 30 100.0 35 AGGAGCGGTT .............................. ATCATCGGGGGCTGGCGGCAGGAACAAGCACAGCA 1211908 30 100.0 38 AAGCACAGCA .............................. ACTACACATTGTACGCATGCGGAAACGGCTACACATAC 1211976 30 100.0 36 CTACACATAC .............................. AGAGGAAACGCCGCCGTTGTAAACATAGCTTTCAAA 1212042 30 100.0 35 AGCTTTCAAA .............................. GAAAATCTCGGTTTCGTGGAAGTGTCAGTAAGATC 1212107 30 100.0 34 CAGTAAGATC .............................. CTCCGCAAACGACCACGCCATCGGGTGGCCAGCG 1212171 30 100.0 GTGGCCAGCG .............................. TATAGAAAGA ========== ====== ====== ====== ========== ============================== 37 30 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.80,-0.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [183,550] Score: 0.18/0.18 # # Final direction: F [5.37,0.18 Confidence: HIGH] >NC_013421 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 436879 29 100.0 37 CTTGAGGAAA ............................. TCTTTACACTCAATTCGCAATATTTCGTGACCGTGTT 436945 29 79.3 32 TGACCGTGTT ------....................... GTTCTTAGATTACAAAAAGCTCCGGTAGAGCA 437006 29 100.0 32 CGGTAGAGCA ............................. ATGGCACCGTTTTAAGCGGTCGCACATCTGCA 437067 29 100.0 32 CACATCTGCA ............................. CTGTGGCTGAGCTATTTCGTGCGCGTCGTTGA 437128 29 100.0 32 GCGTCGTTGA ............................. AGAAAAATACTCAATCGTGGTCGTGCCGAAAC 437189 29 100.0 32 GTGCCGAAAC ............................. CCGGTTGAGCGCGAGGCGATGAACGCCATTTT 437250 29 100.0 32 ACGCCATTTT ............................. TGCTCGCAACGTTTGCGTATCAGGACTACGCA 437311 29 100.0 32 GGACTACGCA ............................. AGTGAAACCATCGGCCAACGAATACGTAGACG 437372 29 100.0 32 TACGTAGACG ............................. TTGCGGTATCCAGAAACCGCGTTACTACTCGT 437433 29 100.0 33 TACTACTCGT ............................. TGCTAATTTGTAACCTTCCGGTATTACCGGAGG 437495 29 100.0 32 TTACCGGAGG ............................. TTCCAACCCTTTCAGCAAGCTCTACCTGAGTA 437556 29 96.6 TACCTGAGTA ............................C TAATCCGTG ========== ====== ====== ====== ========== ============================= 12 29 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-13.40,-12.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [40.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [392,12] Score: 0.18/0.18 # # Final direction: F [1.83,0.27 Confidence: HIGH] >NC_013411 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1223553 30 100.0 38 ATTTTTTGGG .............................. CCAAGTACCAAAAGTGGCTTTTGGATTTCAACACGATC 1223621 30 100.0 36 CAACACGATC .............................. ATCGGAGCAACGTCCCGCCCGATGTCGCCGACGTCG 1223687 30 100.0 37 GCCGACGTCG .............................. TATTCGATTTCGATAAGCCCGCTGGCTTCGAGTATTT 1223754 30 100.0 34 TCGAGTATTT .............................. TCCATCGAATCATTCGCTCACCTCCGCAGTCCTC 1223818 30 100.0 37 CGCAGTCCTC .............................. TCGTCGACTATGCGGAAGCCAATCGCGGGCAGGCGCC 1223885 30 100.0 38 GGCAGGCGCC .............................. TGGTACTGCGCGCGAATCCGCTGGCATTAGCCATTACC 1223953 30 100.0 38 AGCCATTACC .............................. ATATGCCAGTTTGATTTTGTTAAACACCGTTTCAATGC 1224021 30 100.0 38 GTTTCAATGC .............................. ACATGGTGGCGTCCAGCCTCGCCGGCCAGCGATAAAGA 1224089 30 100.0 37 GCGATAAAGA .............................. ATTTTTCTAATTACTTTAGTATCATTTACTATTTTTT 1224156 30 100.0 38 ACTATTTTTT .............................. TCCTGCCGTTCCACTCACCGCCGTTTCGCTCACCTGCG 1224224 30 100.0 35 CTCACCTGCG .............................. TGGTATCGGTAGTAATACTCGCGCGCCGCAAAATC 1224289 30 100.0 39 CCGCAAAATC .............................. TCGAAGATGAGCAGATAGCTGATAGCGTCATATTGAACA 1224358 30 100.0 35 ATATTGAACA .............................. GCAGACGGGGACAGACGTATCAGAACATTGCTTGG 1224423 30 100.0 38 CATTGCTTGG .............................. ATAACCCTGACCCCTTTCTGCCGCAGCAGAGCGATGAA 1224491 30 100.0 36 GAGCGATGAA .............................. TTCTCAAGCGCAATCAATTTCCATTTGCGGCTTTCC 1224557 30 100.0 36 GCGGCTTTCC .............................. AAAAATCGGCGGAGTTTGGAGGAGTTTGGCGTGAAG 1224623 30 100.0 36 TGGCGTGAAG .............................. AAAGACGACCGTTTCGTCAAAACAGGCAGCCTCCCG 1224689 30 100.0 36 CAGCCTCCCG .............................. AAACGGAGTATCTTGATAAGCTCGAAGAAAAAAACT 1224755 30 100.0 36 GAAAAAAACT .............................. TAATTGAGGTGAAACGAATGGAGAGGCTCGATGTGA 1224821 30 100.0 35 CTCGATGTGA .............................. AAGGAGGTGATAGAAGTGACAAAAGAAGAGATTGT 1224886 30 100.0 39 AAGAGATTGT .............................. TGTTGCAACTCACGAAGCTGTTTTTGTTCCGGCGTCTCC 1224955 30 100.0 37 CGGCGTCTCC .............................. TTCAACCCCCCGATGTCGGTGATCGCCACCGTTTTGT 1225022 30 100.0 37 ACCGTTTTGT .............................. TGAAAATGTGTCCTATTTATCCCGTGATGTAGGTAAA 1225089 30 100.0 36 TGTAGGTAAA .............................. GCGCAAGAGCCGCTAGCGGCGCAACCGAGCAGCTAC 1225155 30 100.0 36 GAGCAGCTAC .............................. AACTCCTTCGCCATTTCTTTCAGCGATCGGGACAAT 1225221 30 100.0 39 TCGGGACAAT .............................. ACAAGCATGCGTATCAAAAGGTGGCGGCGGTTCCGTTGG 1225290 30 100.0 35 GTTCCGTTGG .............................. CTGTTTGATAATAGAAGCGTCTTGGCTATCATCCA 1225355 30 100.0 35 CTATCATCCA .............................. CATTCCAGATGGATGATGTTAGCGATCGGATGCCG 1225420 30 100.0 35 TCGGATGCCG .............................. GGACGGTACTACCGTCAGAAGGATGGCGAGATCTA 1225485 30 100.0 37 GCGAGATCTA .............................. TCAGCCCGCCGTGCTCGGCAAGCTGTTCTACGTATTC 1225552 30 100.0 35 CTACGTATTC .............................. ATAATTGGAAAAGCTCGATTGCCAACGCGGCATTA 1225617 30 100.0 37 CGCGGCATTA .............................. TGTCGTCGCGATTGGGGATGTCATTATCGATGCGCGG 1225684 30 100.0 36 CGATGCGCGG .............................. ACGCTCCCGGATCGCGAGGATCTCGGGGGCGTCAAG 1225750 30 100.0 36 GGGCGTCAAG .............................. AACGCCTTTGCCGCCGTTAGCATATATTTTGCATCA 1225816 30 96.7 35 TTTTGCATCA ...........G.................. TTCCAATTTTTTTCATTCTACATTCCTCCTTAGTT 1225881 30 100.0 35 CTCCTTAGTT .............................. GCTTGTTTCTCACTCATCTGATCTGTACTCCTTTC 1225946 30 100.0 37 TACTCCTTTC .............................. TCGTACACGATCACGTGTACGTCGAGGCGCCAAACCT 1226013 30 100.0 35 CGCCAAACCT .............................. TCCCCTCGCCGACGATCAAGTCGGGCGGGAAATCG 1226078 30 100.0 37 CGGGAAATCG .............................. CTGCAAGATGATATCACACAGCCGGGGCGGAAGCTGT 1226145 30 100.0 CGGAAGCTGT .............................. TTTGAAATAA ========== ====== ====== ====== ========== ============================== 40 30 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.80,-0.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [261,258] Score: 0/0.18 # # Final direction: F [5.78,0 Confidence: HIGH] >NC_013421 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 439691 30 96.7 31 CTTGCCCGTA -............................. CGTTACTACGCAGTGATGGGAATATTTCTGG 439752 30 100.0 31 ATATTTCTGG .............................. GAGAAAGAGCGCGAGCTAAAAGAGTTGCGCA 439813 30 100.0 GAGTTGCGCA .............................. TACCACGCGGG ========== ====== ====== ====== ========== ============================== 3 30 31 CGTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-14.80,-14.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [330,186] Score: 0/0.18 # # Final direction: F [1.24,0.41 Confidence: MEDIUM] >NC_013411 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 639979 30 100.0 35 CATTTTTGGG .............................. GACAGCCCTTGCACTTGAACAGGCGTGGTTCGGTA 640044 30 100.0 35 TGGTTCGGTA .............................. GTTGGGATGGTGGGGATGATGGAGAGCCCAGACTA 640109 30 100.0 36 GCCCAGACTA .............................. CTAGTACGGCATTATGACCAATTTTTGAAAAAGTTA 640175 30 100.0 37 GAAAAAGTTA .............................. AAAAACCCCTCCGCGTTGGCCGTCTGCGGATTGTCAA 640242 30 100.0 38 GGATTGTCAA .............................. ATTTTTGTCACGTCCTCGCCCCACACGAACGTCGAGCC 640310 30 100.0 36 ACGTCGAGCC .............................. CGTTGACGGTGGATGGTAAAGTCTACGCGTGGGGAT 640376 30 100.0 35 GCGTGGGGAT .............................. ACGGAACAACAATACAATGATCTGCTCGCGACTGC 640441 30 100.0 36 TCGCGACTGC .............................. ATCTATATATCTAACAAAACGCAATACCCAGCGCAC 640507 30 100.0 37 CCCAGCGCAC .............................. GCCTTCCCGTTCATCCAAGCGCCGCAACGACCGCATT 640574 30 100.0 35 CGACCGCATT .............................. CAAATTCAAATCAGCCACTGAAGTTTACGATACCA 640639 30 100.0 37 TACGATACCA .............................. TCTTTTGCACGCAGTACCCGACCAGTGACACCTTGCC 640706 30 100.0 36 ACACCTTGCC .............................. ATGTTTCAAGTTTCATAAATAATACTCCTTTCGTCC 640772 30 100.0 37 CCTTTCGTCC .............................. CATTCAAGCGGGGAATACATCGAGAGTGACCCGCTCA 640839 30 100.0 35 GACCCGCTCA .............................. TTCGACTTCAGCACCAAAAAGCCAGCGGCACGGCC 640904 30 100.0 35 CGGCACGGCC .............................. CGGACGACGAATGGAAGCGATACACTGCCGCGGTT 640969 30 100.0 36 TGCCGCGGTT .............................. GACGCAAATGGACAAGTACCGGCAACGCAATTGCCG 641035 30 100.0 37 GCAATTGCCG .............................. ACTTCAACCGATAATATTTCCGCTCGCTCATGCCAAG 641102 30 100.0 37 TCATGCCAAG .............................. CTTTGCAAATCTTCAAAAATCTCATTGGGCATAAAAA 641169 30 100.0 38 GGCATAAAAA .............................. AAAATAACCGACCTAAATCTCGAGTTAAAACGAATTCA 641237 30 100.0 38 AACGAATTCA .............................. TGAGCTGGCTTCATAAACAGCCTTGTACTTTCCCGGGA 641305 30 100.0 35 TTTCCCGGGA .............................. ATAAAGGAGTAAAAGAGTCAGGCACCTTAGAAACA 641370 30 100.0 39 CTTAGAAACA .............................. GCGGAACTGTCCAAAGGGTTGATGACAGACGAACAGTTG 641439 30 100.0 CGAACAGTTG .............................. CAATGGATGA ========== ====== ====== ====== ========== ============================== 23 30 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.80,-0.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [60.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [203,66] Score: 0.18/0.18 # # Final direction: F [5.82,0 Confidence: HIGH] >NC_013411 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 642520 29 100.0 37 CACGGGTAAA ............................. CAGTGTATAGACTTCTTGAGTTCCTTTAAAAATTCGA 642586 29 100.0 38 AAAAATTCGA ............................. CCGGTCGCTAGGCGTACCAGCGGAGGATGCGCGCATGA 642653 29 100.0 38 GCGCGCATGA ............................. CCCTGCGAGCGTCCGGGTTTCTTTTTATCGTCAATGGG 642720 29 100.0 36 CGTCAATGGG ............................. CTATTCCGCGTCGTACGTCTGTTTCTTTGGATGTCT 642785 29 100.0 36 TTGGATGTCT ............................. CAGGCAAATCCTGCTGTTGTGGCTGTTCCGGCTGGC 642850 29 100.0 39 TCCGGCTGGC ............................. CTTGGACAGGACGAAGAAAGCACGCTGAAGAACCTCGCC 642918 29 100.0 37 GAACCTCGCC ............................. CCACTTGAACAGGCATGGTTCGGCTGGTGGTCGTGCC 642984 29 100.0 40 TGGTCGTGCC ............................. CTTTTTCCGGTTCAACGTGCTTCCGCAAACCCTCTTGCGG 643053 29 100.0 36 CCTCTTGCGG ............................. CTATAATACTTTTGCGTATGTAGCGGTCATGTTAAT 643118 29 100.0 36 TCATGTTAAT ............................. CTTGGTCATCCTTGGCGCGTCTGGTGGGCTTTTCCC 643183 29 100.0 37 GGCTTTTCCC ............................. CCCTGTTCTTTGAAATCGGACGACTGTACGACAGCGT 643249 29 100.0 39 ACGACAGCGT ............................. CCTATCCCATGCATAGTCTTTTCCGCCAAATTCAAATAC 643317 29 100.0 40 ATTCAAATAC ............................. CTCCCAAGACAAAACCAAGGGGGGATTTGAAATGACACAT 643386 29 100.0 38 AATGACACAT ............................. CACATGTCCGCTTCATAGCGAGCGAGTCGGTCAATGAT 643453 29 100.0 37 GGTCAATGAT ............................. CCCGCCAAATAAATCGAGTGCTTCGTCTTCATCTTCT 643519 29 100.0 38 TTCATCTTCT ............................. CTCACGAAGAAGCTGCCCATCTTGTTGTCTGGATGAAA 643586 29 100.0 37 CTGGATGAAA ............................. CTTTCTTCATTACTGCGAAAACGAACGACACCACAAA 643652 29 100.0 37 ACACCACAAA ............................. CTATTTGGAAAGTTGTTTAATCATGTACGGAATGGGG 643718 29 100.0 CGGAATGGGG ............................. TTGAAAAAGG ========== ====== ====== ====== ========== ============================= 19 29 37 GTTTTTATCGTACCTATGAGGGATTGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.52%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.80,-0.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [110,1694] Score: 0.18/0.18 # # Final direction: F [5.37,0.18 Confidence: HIGH] >NC_013421 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 4009625 28 100.0 32 AACTCTTACG ............................ AAACGTTAATGATTTCTTTGGCGAAGATGTTC 4009685 28 100.0 32 GAAGATGTTC ............................ GACGCTCGTCACACAAATGTTAGAGCGAGCCG 4009745 28 100.0 32 GAGCGAGCCG ............................ AGAAATGGCCCAAAACTCGCATTGACATAACA 4009805 28 100.0 32 TGACATAACA ............................ GTTGAATTAATTCCTAGCCGTGGCAACCTAAC 4009865 28 100.0 32 GCAACCTAAC ............................ ACGGATGGCGGCATTTTAAAAGCAAAGTATTG 4009925 28 100.0 32 CAAAGTATTG ............................ GACCGGGTTGGTGATGCCCTTGGCCTTGCAGT 4009985 28 100.0 32 GCCTTGCAGT ............................ AGCCCATGCAATACGCATCAGCCTGCGCATAC 4010045 28 100.0 32 CTGCGCATAC ............................ TGCCAGCGGACCAGATGAGGGGGACCGCCAGT 4010105 28 100.0 32 GACCGCCAGT ............................ ATCGTAAAATCCTCCGTTCGCCTGCTCGAATA 4010165 28 100.0 32 TGCTCGAATA ............................ AGATGGAATTGCTGTTTCATGCAGCACCTCGC 4010225 28 100.0 32 AGCACCTCGC ............................ CGAGCCATTCGCGATGCTCTGGACGCGAGAGA 4010285 28 100.0 32 ACGCGAGAGA ............................ AGCAGAACGCGCCACCAGCGATGATTCCAGCC 4010345 28 100.0 32 GATTCCAGCC ............................ ATTGGTTGGGCTATCGTGATGTTCGCTTGCAC 4010405 28 100.0 32 TCGCTTGCAC ............................ CTTCATGACGGCGAACGTAGCGCAGTACGCGC 4010465 28 100.0 32 CAGTACGCGC ............................ TCAGAAAGTCGGTATCGCGTCGTTTTGTCCGT 4010525 28 100.0 32 TTTTGTCCGT ............................ GCCGTCCAACTCTCTGCAACTGCTGGACGAAA 4010585 28 100.0 CTGGACGAAA ............................ GGGCGCGCTG ========== ====== ====== ====== ========== ============================ 17 28 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.57%AT] # Reference repeat match suggestion: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 92% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [66.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [188,164] Score: 0/0.18 # # Final direction: F [1.14,0 Confidence: HIGH] >NC_013410 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1903817 37 100.0 36 GAGGGGTACT ..................................... TGAGATCAATTTGATGGTTAATCTTATCCATCTCGT 1903890 37 100.0 39 TCCATCTCGT ..................................... CGTATACTCTTCTTGGTGCAAAGAAGAAGGAAAATACGG 1903966 37 100.0 38 GAAAATACGG ..................................... TCAAAGAATTTAGCTATAAGAGGTAACTGATCCCAATA 1904041 37 100.0 38 GATCCCAATA ..................................... CCTCAGCTTGCGAGTCATACTCTACAAGAGAATTCGTA 1904116 37 100.0 AGAATTCGTA ..................................... CTTCAGCTTG ========== ====== ====== ====== ========== ===================================== 5 37 37 CCCTGAAAAGCATTCCTCTCGCAAGAGAGATTAAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.05%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-6.70,-6.80] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [48.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [1309,1157] Score: 0/0.18 # # Final direction: R [0,0.27 Confidence: MEDIUM] >NC_013421 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 4027943 28 100.0 33 NNNNNNNNNN ............................ CATGACGGCATGTGCCAGATCAACGGCATCTAA 4028004 28 100.0 32 NNNNNNNNNN ............................ AGCACAATCAGGCGCGGATCATTGCGGAACGG 4028064 28 100.0 32 NNNNNNNNNN ............................ AGAAGAAGGTGTTTTTGATTACGGCATCCTGT 4028124 28 100.0 32 NNNNNNNNNN ............................ CGACGGTGCGGTAATCGAGTATGAACCCGCTA 4028184 28 100.0 33 NNNNNNNNNN ............................ CTGCTCGGCGATAATCTGGCTGGGGTTTTTTGG 4028245 28 100.0 32 NNNNNNNNNN ............................ CGCGCCATACGTTGCACCCGTCCGATAAATTC 4028305 28 100.0 32 NNNNNNNNNN ............................ GCGCTGTGCCTTGCGTATCAGAACCTTGCTCA 4028365 28 100.0 32 NNNNNNNNNN ............................ TGACGAATGCCAGGGCTTGTATTAGGTATTAT 4028425 28 100.0 32 NNNNNNNNNN ............................ TAGTTGAGCGTTGAATTCATCACGTATCGCTC 4028485 28 100.0 33 NNNNNNNNNN ............................ AGCCTGTCTGTTGGCCCCGGCATGCTGCGTGAA 4028546 28 100.0 32 NNNNNNNNNN ............................ TCCTCAGGCTGAAGTGGCATAAATGAAATGCT 4028606 28 100.0 32 NNNNNNNNNN ............................ TTGAGCCAACCGACCTGAAGTAGTGCGTCAGC 4028666 28 100.0 32 NNNNNNNNNN ............................ AAAGTTAGCTTTGGGATGAGTGCAGATGATGG 4028726 28 100.0 32 NNNNNNNNNN ............................ TGCTTAGAGCTCCACAGCACGTTGCCGCCGAC 4028786 28 100.0 32 NNNNNNNNNN ............................ AGAGAATGCACGGAACTTATAGGATACACGGC 4028846 28 100.0 32 NNNNNNNNNN ............................ TAAAAGCGGGGATTTCAACGACCTGCTGACAG 4028906 28 100.0 32 NNNNNNNNNN ............................ AGCGCATCTTCGAGCGTCGGAACCGGATCAAT 4028966 28 100.0 32 NNNNNNNNNN ............................ AGCCGGAATCTCAACAAGCGCTGTGCCGGTGA 4029026 28 100.0 32 NNNNNNNNNN ............................ AGATGAAAATGGCGTGGAGGGGCATTCGCTGG 4029086 28 100.0 32 NNNNNNNNNN ............................ ATCGGTGCCACCTGGTACTTTGCGTTTGAAGC 4029146 28 100.0 32 NNNNNNNNNN ............................ TTTTCGAGTATCAGAAGCATCTACGCGTCAAT 4029206 28 100.0 32 NNNNNNNNNN ............................ ACGAAAGCACAGAAGAAGCGATCGAGCGTCGT 4029266 28 100.0 32 NNNNNNNNNN ............................ CAATCGCTGCGCCGGTTTCATCTACACCAAAA 4029326 28 100.0 32 NNNNNNNNNN .............C.............. CGAAATGCAAGGGGAATGGGTACCGAAAAATG 4029386 28 100.0 32 NNNNNNNNNN .............C.............. GGCGTTGTCAGCGTAATGTTTCCGCTTCCCGT 4029446 28 100.0 1 NNNNNNNNNN ............GC......T.C..TGT NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 26 28 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.57%AT] # Reference repeat match suggestion: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 92% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [297,42] Score: 0.18/0.18 # # Final direction: F [1.46,0 Confidence: HIGH] >NC_013411 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2849313 30 93.3 35 AAGTGAAAAT ..........TC.................. GGACAAGCGAGGAGTTGAAAGCATGCGCGACCCGT 2849378 30 100.0 38 CGCGACCCGT .............................. CCAATTTTGCCTGGTCGTAGCGGCGGGCGTCAATGTTG 2849446 30 100.0 36 GTCAATGTTG .............................. CGTTTCCGGCTGCGCGAGCTGGGGCGAGATGAAGCC 2849512 30 100.0 36 AGATGAAGCC .............................. AAGAAATGCAACGGCATGGTATTGATGTCTCTATTG 2849578 30 100.0 36 GTCTCTATTG .............................. TAATCTTGAACCAGTCCATAAAATAGTTGTCGATCT 2849644 30 100.0 35 TTGTCGATCT .............................. ATTTTGCCTGGTCGTAGCGGCGGGCGTCAATGTTG 2849709 30 100.0 37 GTCAATGTTG .............................. CAGCGTTGGAGCGGTTTTGTCAATGTTCGACACCGCA 2849776 30 100.0 36 CGACACCGCA .............................. GCGGCAAATCTTCCTTAGCCCTTGCTTCGTCCGGTT 2849842 30 100.0 35 TCGTCCGGTT .............................. ATGAGTGGAACGAGAGCCGCCGCAATAGCAGGGGA 2849907 30 100.0 38 TAGCAGGGGA .............................. CCGATCAAAATACATGAACAATTGGAAACATTTTATCA 2849975 30 100.0 38 CATTTTATCA .............................. TAGGGAGGATGATTCACTATGACACTTGTCGAAGCTCT 2850043 30 100.0 38 TCGAAGCTCT .............................. CACTCCCCTTATTGCCCGTCCGATCGTCTCGGGCGGGC 2850111 30 100.0 36 TCGGGCGGGC .............................. GTAGGGAGGTTAGAAAAAACAAGGATTGAAAATGAC 2850177 30 100.0 35 TGAAAATGAC .............................. ATGCCGGATAGCGCCAACAAGACGTCCCGTGTCAA 2850242 30 100.0 36 CCCGTGTCAA .............................. GGTTTCGCAACTTGGGCGCCCTCAAACACTACCGAA 2850308 30 100.0 37 CACTACCGAA .............................. TGTAGAGCGCTATTATGCTGGAAATCCGCCACAACGG 2850375 30 100.0 35 GCCACAACGG .............................. AAGGTACAGGTCAGATTTTCCATCACTACAGCATG 2850440 30 100.0 35 CTACAGCATG .............................. GCAAGAGCCATCGCTGACGCTGTTTCTAAAACGAT 2850505 30 100.0 35 CTAAAACGAT .............................. ACGGCTTCTTTCCAGCAAGCACTTTCAGGTTTTTC 2850570 30 100.0 37 CAGGTTTTTC .............................. AGTGTTTAGTTCTGATAGATGAAGCAGGTATTATGTT 2850637 30 100.0 39 GTATTATGTT .............................. GGAACGTTTTGCGATTTATGACAATGAGGGCTATGGGTA 2850706 30 100.0 34 GCTATGGGTA .............................. CCGATCACGCACCAACTCGTAGTCACTTTTCCCA 2850770 30 100.0 35 ACTTTTCCCA .............................. TTTTTGCTGTGTTTGGTGTATTTGATGAGTTGCTC 2850835 30 100.0 35 TGAGTTGCTC .............................. GTATAGCGGCACAGCCTCCGGAAAATTAACTAAAT 2850900 30 100.0 40 TTAACTAAAT .............................. GCAGCTATACCAGGATATGTTCCCACTGAACTCGGCTGGT 2850970 30 100.0 36 CTCGGCTGGT .............................. TTAACGGCATGCGCTCCCACAGATACGGCTTCTCGT 2851036 30 100.0 35 GGCTTCTCGT .............................. GAGAGCTAGTGATTTTTACATGTTGCTGTTACAGT 2851101 30 100.0 34 CTGTTACAGT .............................. GAATCCGGTGTATAGCATGATGATGCTATTTGGA 2851165 30 100.0 38 GCTATTTGGA .............................. CGTGCACCAATCCTTGTGTGATCTCCTGTTGGATGGTA 2851233 30 100.0 38 TTGGATGGTA .............................. GGTCTTGAGGCCGGCGACCGGTGATGCATGGTAGAAAA 2851301 30 100.0 35 TGGTAGAAAA .............................. GCGAAGCATCGCGCCTGAAATTAACGATGTGCTTA 2851366 30 100.0 37 GATGTGCTTA .............................. CGAAGCCAAAGCGGTTGACAGCGAGGGCAACGAAAGC 2851433 30 100.0 36 CAACGAAAGC .............................. TCGTTGCCTCCGATGAATTGAATGTTGTTGTAGTCG 2851499 30 100.0 35 GTTGTAGTCG .............................. TTCGCTCAATGCTAGCAGGGGCGACCCCCCAGCGT 2851564 30 100.0 35 CCCCCAGCGT .............................. CGGAACAATAGCACTGATCGGAACCCCCAGCAAAT 2851629 30 100.0 CCCAGCAAAT .............................. CCCCAAACCA ========== ====== ====== ====== ========== ============================== 36 30 36 GTTTCAATCCCTCATAGGTACGATAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [220,184] Score: 0/0.18 # # Final direction: R [0.27,5.28 Confidence: HIGH] >NC_013422 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 888499 37 100.0 33 NNNNNNNNNN CAGCACCGG......T..................... TCGAACTTATTTACGATACGATCCACACAAGTT 888569 37 100.0 34 NNNNNNNNNN ..................................... TCCCATATACCGCATCCAGTCGGCTGATCTTGGG 888640 37 100.0 34 NNNNNNNNNN ..................................... GGGTGCATGAGCAGCTGGCCATTCCAGAGCCACA 888711 37 100.0 36 NNNNNNNNNN ..................................... GCCTGCCATACCACCTGCCCACATCGTTTTAATAAG 888784 37 100.0 34 NNNNNNNNNN ..................................... GCTGCCGGTGGTGGCAACCGATGCCCACGGCTTT 888855 37 100.0 34 NNNNNNNNNN ..................................... GAGAATTGGGCTGGTCATGAGGTAACCCATCGAT 888926 37 100.0 34 NNNNNNNNNN ..................................... ATCCATCACCATTACTGCATTTGATGCAAAAATT 888997 37 100.0 34 NNNNNNNNNN ..................................... GGCAAGTTGTGAATTGGTATAAAGCCCCAGAACA 889068 37 100.0 34 NNNNNNNNNN ..................................... GATTGGAATGGTGACTTAAACTATGCCGGATATA 889139 37 100.0 34 NNNNNNNNNN ..................................... CATCGTCCAATGTCACCCGGTGCAGGCTGTAATC 889210 37 100.0 35 NNNNNNNNNN ..................................... GTGGTGTCCGAGCACGCTTCCCATGATTGCATGTT 889282 37 100.0 34 NNNNNNNNNN ..................................... TTTCGCGGATGGAAAGTTACCTCGCGCGGGGGCC 889353 37 100.0 34 NNNNNNNNNN ..................................... GCCAATCCAGACCAGCGCGTTCCCAATCACGTCA 889424 37 100.0 34 NNNNNNNNNN ..................................... TCAAGCAAACTCAAACGCTTGTCATTCTGCGACT 889495 37 100.0 35 NNNNNNNNNN ..................................... GTTTGTCTCATCGAACATCCGATCAGGCGCAACGG 889567 37 100.0 33 NNNNNNNNNN ..................................... CATGCTGTGCAATCAAGGCCAATGGCCGAAAAA 889637 37 100.0 35 NNNNNNNNNN ..................................... TTTGCTGATGTCGGCGGATCGGTCAAGTACTACCA 889709 37 100.0 35 NNNNNNNNNN ..................................... GAACAGCACTGATTTTGCGCTGGCAGCCATCACCG 889781 37 100.0 34 NNNNNNNNNN ..................................... GATAGCATTCAGCGCATCGATGACGGACTGGGCG 889852 37 100.0 35 NNNNNNNNNN ..................................... CAGAAGGCCTGACCGTGGACGGTTGGCTGGATCTG 889924 37 100.0 35 NNNNNNNNNN ..................................... TTGCGGGGGTGGAGGCATGACCCCAACCAATACAA 889996 37 100.0 34 NNNNNNNNNN ..................................... CCGCCAGCTTCCTTGCGGTTGCTGGGCATGAACT 890067 37 100.0 34 NNNNNNNNNN ..................................... TGAATCAATTTGCAAAGATGATAACAAGTACGCA 890138 37 100.0 36 NNNNNNNNNN ..................................... TTCGGCTGCATCCGCATAGGCATCGCCAAGCTCTTT 890211 37 100.0 33 NNNNNNNNNN ..................................... ATTCCGGCAAAGAAGTGGCACTGTGTGAATCCG 890281 37 100.0 35 NNNNNNNNNN ..................................... CGCTTGCTGCACAGTGGTTGCATCTACCGACTGCT 890353 37 100.0 35 NNNNNNNNNN ..................................... TCCAGCAAATCCTGCCCGACTATGATGCTTATATC 890425 37 100.0 34 NNNNNNNNNN ..................................... CTTGGCTGGCCTGGGCCTTGTCGATCGATAGCTG 890496 37 100.0 34 NNNNNNNNNN ..................................... GTCTGATGCCGCCGATGCCGCCACCGAGCTGATC 890567 37 100.0 35 NNNNNNNNNN ..................................... AGCCCCTGGGTTGCGTTTTTAAGCGGCAAGTCGCT 890639 37 100.0 34 NNNNNNNNNN ..................................... CGCCTGAGCATGTTGCGCTGCTACGCGAGGCGCT 890710 37 100.0 1 NNNNNNNNNN ..................................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 32 37 34 GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [4,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-16.60,-15.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [43.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [696,178] Score: 0.18/0.18 # # Final direction: R [0.55,5.55 Confidence: HIGH] >NC_013440 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 6705904 36 100.0 36 CGATCTGCCT .................................... CCCTACAAGCACGTCCGCTATACGAGCGTCTTGGCG 6705976 36 100.0 34 CGTCTTGGCG .................................... AACCTGAAGCAGCTATTCACGATCTCCGAGGCCA 6706046 36 100.0 35 TCCGAGGCCA .................................... GTCGGAGTAGCCGGTATTGCTTTGCATGGAAGCCT 6706117 36 100.0 36 ATGGAAGCCT .................................... TGCTGAAGCTCAGTGAGCCGCAAGAAGAACTCCTCG 6706189 36 100.0 36 GAACTCCTCG .................................... CGCGGCCGCGGCCTCAGCGAGGCCGAGATCTCGGCC 6706261 36 100.0 35 GATCTCGGCC .................................... AGATACTGCATCCACTGCCGCGTCTGCGGCCTCGG 6706332 36 100.0 36 GCGGCCTCGG .................................... CCTCATCCCACACACCGGCCGCAGTGGCGCGGCGCA 6706404 36 100.0 37 GCGCGGCGCA .................................... CCTCCGGCGCTCCGGAGGATGTCGCGGACGTCCTGGC 6706477 36 100.0 35 ACGTCCTGGC .................................... CGCTGGTCGCCGAGCCGATACCGCTTCGCGATCTT 6706548 36 100.0 36 TCGCGATCTT .................................... TACGGCGGTTTCGGCGCTACCGAGCTGCCGCTGTTG 6706620 36 100.0 36 GCCGCTGTTG .................................... CCACGCTCTACGTGTACATCTACGGCGAGACCGCCT 6706692 36 100.0 37 GAGACCGCCT .................................... AACTGGTTTCGGTCGTCCACGCCGACGAGCTGGAGAT 6706765 36 100.0 36 AGCTGGAGAT .................................... CTCAGTGATTCCGGCCTCCGGGCGCACGAGCAGCAC 6706837 36 100.0 36 CGAGCAGCAC .................................... ACGTCCCGCCCGGATTCATGAAATCGACGTTCGTGT 6706909 36 100.0 38 ACGTTCGTGT .................................... AGCGCGCCGAACGCGCCGACCTGCGCCATGACGGCCAC 6706983 36 100.0 35 TGACGGCCAC .................................... AGCCAGGAACGATAAAGAGCTCGCGTTCTTACCGT 6707054 36 97.2 35 TTCTTACCGT ........T........................... GTTTTCGCCGGCAAGGCATCGATTTTCTGGACGTC 6707125 36 100.0 36 TCTGGACGTC .................................... TTACCGCCCGGACTATCCTCGAAGGCCTTGTCCAGG 6707197 36 100.0 36 CTTGTCCAGG .................................... GTCTCCCGCATGATACGGGTGTATCGTGTACATGGA 6707269 36 100.0 35 TGTACATGGA .................................... CAGACCGCGACCTCGGCGCGGTTCGGCGCGGGGCG 6707340 36 100.0 36 GCGCGGGGCG .................................... ACTGAGGCCGGGATCCTCAAGCGCGTGCGTCTGCGC 6707412 36 100.0 36 GCGTCTGCGC .................................... TCTCCCGACTCAGCCAGTGCCAGGATCGCGACTGCC 6707484 36 100.0 35 CGCGACTGCC .................................... CGCAGACGCTCGATCTCGGCGGCAAGCTCCGCCTT 6707555 36 100.0 37 GCTCCGCCTT .................................... GGCGGCGGCTTCGGCGGGGGATTCGGCCAGACCTGAT 6707628 36 100.0 35 CAGACCTGAT .................................... GCCGTCCAGGACATCGCCGATGTCCGCCGAGCCGT 6707699 36 100.0 36 GCCGAGCCGT .................................... GCGGCGCGCTTCACCAGCTCGTCGTCGTCGAGGCGG 6707771 36 100.0 36 GTCGAGGCGG .................................... AGCCTCCCCCTCCGCGCCGCAGGCCGGGCAGCGGGG 6707843 36 100.0 38 GGCAGCGGGG .................................... GATCCCGACTTCGCCGTCTACGCAGGCCGCGTGAGGCG 6707917 36 100.0 37 GCGTGAGGCG .................................... TCCAGGAACACAAATTCGGATCCCACCTCGCGAACGA 6707990 36 100.0 35 TCGCGAACGA .................................... ATTGACGAGCTGGTGAGGGAGGCTCTCGAAGGGCT 6708061 36 100.0 36 TCGAAGGGCT .................................... GCGGTCAAGATACTCTAGCTCCCCGGCGCGCTCTCT 6708133 36 100.0 35 CGCGCTCTCT .................................... TCGACGCGCTTCCCGAGGGCGCACACCGCGTGCGC 6708204 36 100.0 35 CCGCGTGCGC .................................... TCGGCATCGATCGCCAGTACTCCATGGGCCAGATC 6708275 36 100.0 36 GGGCCAGATC .................................... GCCACGCAGATCGGCGGGAAGCAGCCTGCTGGACTT 6708347 36 100.0 37 TGCTGGACTT .................................... ACCGAGGCCGCGCGGCCCAGCAGCCAGATGCACGGCA 6708420 36 100.0 ATGCACGGCA .................................... GTACCGGACTGGCGTCCGACAGCCAGCCTCTTAAC ========== ====== ====== ====== ========== ==================================== 36 36 35 GTTTCCACGACCCAACAGTCGTGGCCTCATTGAAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [8,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.90,-9.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [46.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [666,375] Score: 0/0.18 # # Final direction: R [0.27,0.37 Confidence: LOW] >NC_013440 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 6642690 36 100.0 36 NNNNNNNNNN .................................... CATCCCCTTGCGCTCGGGCGTCGCGCTGAGCCCCAG 6642762 36 100.0 36 NNNNNNNNNN .................................... TCGATCAACCACCTGGCATGCTCGATGTCCTGAATG 6642834 36 100.0 35 NNNNNNNNNN .................................... TTCGCTGACGGCACGATGTGCCACCCCGAGGTGAT 6642905 36 100.0 35 NNNNNNNNNN .................................... GCCAGAGCCGCGTTCCGGTCCGCGATCTCGCGCGC 6642976 36 100.0 36 NNNNNNNNNN .................................... GACGCGGCCGTGGCGCGAATCGCCGAGGAGATGAAC 6643048 36 100.0 36 NNNNNNNNNN .................................... TGGAGAGCCGCGGGGCTGTTGAGGCGTCGCGGGCCT 6643120 36 100.0 36 NNNNNNNNNN .................................... CGTGAGGCGCGCTCGGGGAGCACCAACGGCATCACC 6643192 36 100.0 35 NNNNNNNNNN .................................... GGGAGCTCTGAGGCCGCGGGGCTTGCCTCCGAAGT 6643263 36 100.0 36 NNNNNNNNNN .................................... AGCCGCACAACTGCCGCAGCAAGCCACGACACGCCA 6643335 36 100.0 38 NNNNNNNNNN .................................... AACTTCCTGCGTGCGCTTCGGGGAGAGAGGCGCCTCGG 6643409 36 100.0 36 NNNNNNNNNN .................................... AACATTACCGAGTTTCCACAACACAGCGAGAGGTGG 6643481 36 100.0 37 NNNNNNNNNN .................................... CGCTTCAATGAGGCCGCGCTCTGCGCGCGGAAATGGT 6643554 36 100.0 34 NNNNNNNNNN .................................... GTCCGATTATGTCCCAGCGCGCGAAGATCGTGGC 6643624 36 100.0 36 NNNNNNNNNN .................................... GCCGACCCTCGATGACCCGCCACTCTCGGACGGCGT 6643696 36 100.0 36 NNNNNNNNNN .................................... CCTTATTTTGTCGTCGGCCCAACTGCCGCCCGACAA 6643768 36 100.0 35 NNNNNNNNNN .................................... CACAGCTGCCTGCAAAAACTGCTCCAGTGCCATCC 6643839 36 100.0 35 NNNNNNNNNN .................................... ACGGTGGCGCGCACGAAGCTTCTCGCACTCGCATC 6643910 36 100.0 35 NNNNNNNNNN .................................... CCGACCCCCCGGACAGCGAAACCGCAGCCACAGTT 6643981 36 100.0 36 NNNNNNNNNN .................................... CCACGTCGCACAGCGTCTTGGGAGAGACGCGCGCAT 6644053 36 100.0 37 NNNNNNNNNN .................................... GACCCCAACGGTAGCCCGCGTACCAAAGCTCTTTACC 6644126 36 100.0 36 NNNNNNNNNN .................................... CCTCCTCGCGGGCCCTCAACACGAGCTCGCACTTGT 6644198 36 100.0 36 NNNNNNNNNN .................................... GCCTGGTTGGCGTCCGTCTGCCTGCGCCTCCATCCC 6644270 36 100.0 36 NNNNNNNNNN .................................... ATCGCAGTTCCTCCAATGTAACAATTGTGCAGCCGG 6644342 36 100.0 35 NNNNNNNNNN .................................... ATTTGCTTCAAGTGCGGATGCGAAATCGATCACAG 6644413 36 100.0 38 NNNNNNNNNN .................................... CTGACCGCTGCTACTGCCTTCATTTCCGCCCTCGTTGC 6644487 36 100.0 36 NNNNNNNNNN .................................... CCATAGCCAAAACCTGCCACCAAGATTTGCCGCGAT 6644559 36 100.0 37 NNNNNNNNNN .................................... CTCGATGGGCGCGGCCTTGTGGCGTGGAGATTCGCGT 6644632 36 100.0 38 NNNNNNNNNN .................................... CGCCCTTGTTCGGCATCGACGCGGAGGATCTGGAGATC 6644706 36 100.0 37 NNNNNNNNNN .................................... CGCACTACATGCGTTTGGGCATTTCGCGACATCACGC 6644779 36 100.0 35 NNNNNNNNNN .................................... TTGGAGCGCTGCAACTTGTTTGACGCGTCGGGGTC 6644850 36 100.0 36 NNNNNNNNNN .................................... GTCTCTGGCGGGCGATCGCTCGCGCTGCGGTCAAGC 6644922 36 100.0 38 NNNNNNNNNN .................................... GTGTGCCGCGGATCGGAGTCGAGGACGATGCCGAGCTT 6644996 36 100.0 36 NNNNNNNNNN .................................... GCTGTTCAGCGATCGGCGCCTGCCTGACGGCGAGTC 6645068 36 100.0 34 NNNNNNNNNN .................................... CAGCAGCTGGGAGGACAGTCGACCAGCGATTCTC 6645138 36 100.0 35 NNNNNNNNNN .................................... GATGACTCCGACGACAGCTGCCGTGCCGCGCTCAT 6645209 36 100.0 34 NNNNNNNNNN .................................... CATCATCCAGGGGACGCCGCAGCTCAAGGCGGAT 6645279 36 100.0 37 NNNNNNNNNN .................................... GGAACCCGGACAGCATGACGAATTACGCGGCCTCCTG 6645352 36 100.0 36 NNNNNNNNNN .................................... ACGTCGAGCAGGGCGTCGCTGCTCACGTCGACGAAA 6645424 36 100.0 37 NNNNNNNNNN .................................... GTCGAGCAAACTGGGAACCCTGCGGCATTCAAGGCAG 6645497 36 100.0 38 NNNNNNNNNN .................................... CTCTGAGGTGCCCCGGGCGACCAGCGCCCCATCCTCTC 6645571 36 100.0 35 NNNNNNNNNN .................................... GCCGACACGGCAATGGCCATCTGGGGCGAGACCGT 6645642 36 100.0 36 NNNNNNNNNN .................................... CGCTCTCAGCACTGGCGCCGACCAGGCGCACCTCCT 6645714 36 100.0 38 NNNNNNNNNN .................................... GGTTCTCCAGGTCCTGCACGTGGTTGAGTAGCCAGGCG 6645788 36 100.0 40 NNNNNNNNNN .................................... ACGTGCGTTCGGTGACGCGGAACTGCGCCACGCCGTGGAC 6645864 36 100.0 35 NNNNNNNNNN .................................... TTCTGTAGCTCGATCGCGTCCTCCACCTTCGTCGC 6645935 36 100.0 37 NNNNNNNNNN .................................... GGCGTCGAGGCACTCCACGACGAGGCAGGCCTCGAAG 6646008 36 100.0 37 NNNNNNNNNN .................................... GCGGCGGCCGGCGCGGTGCTCGGTGCTGCGCTCGACC 6646081 36 100.0 37 NNNNNNNNNN .................................... CGTCGCCGTCACACTGATCCCGTCGCCGGCCGGCTCG 6646154 36 100.0 38 NNNNNNNNNN .................................... ATGTCGTACTCGCTGGACCGGTTCTGGTCGCCCGATCC 6646228 36 100.0 39 NNNNNNNNNN .................................... AAGGTGCTCCGGCGCCCAGGCGCGCAAAGAAGCCAGCGC 6646303 36 100.0 36 NNNNNNNNNN .................................... TGAGCGACAAACCCGAGACGTGGATACCCTCTGCTG 6646375 36 100.0 35 NNNNNNNNNN .................................... ACCTGGTAGCGCATGGAGCGCGCGATCCCGAGCTG 6646446 36 100.0 36 NNNNNNNNNN .................................... GTAATAGAGATTACATCATGCAGTACCATCGCAGTG 6646518 36 100.0 37 NNNNNNNNNN .................................... TCCGCCTGCCGCTGCTTCAATGAGGCCACGACTGTTG 6646591 36 100.0 37 NNNNNNNNNN .................................... CGGGGCGGCTGGGCCTGTGCGCGGCCGAGCTGGTCAG 6646664 36 100.0 37 NNNNNNNNNN .................................... AGCAGCCGCCCTAGCCATGTACTGGCGAATTTCCGGA 6646737 36 100.0 37 NNNNNNNNNN .................................... TTTCACTTCGTGCGTTCCGTAAGCAAACATCCTTCGC 6646810 36 100.0 38 NNNNNNNNNN .................................... GCCGCAATGGCCACTGGTACAGCGTCCGACACCGCGGC 6646884 36 100.0 36 NNNNNNNNNN .................................... AGAATACAAAGCGCTATGTCCGGGATAGACTTCGCG 6646956 36 100.0 38 NNNNNNNNNN .................................... ACCGATCTCGAAGGTCGATTTGACTCGTGCCGATCTAA 6647030 36 100.0 38 NNNNNNNNNN .................................... ACCTCTTTGGGGAAACGGCTATAGCGCTGGATATGCGG 6647104 36 100.0 38 NNNNNNNNNN .................................... TGCCTAATAGGGAAAGGGTAGCCTGTCGATTGGGTTTC 6647178 36 100.0 35 NNNNNNNNNN .................................... TTCCTTGACCTACACCGACATTGAACACACCTCCA 6647249 36 100.0 36 NNNNNNNNNN .................................... TTCGTATGACGACGATCGCTGAGGTTCGCCAGGCGC 6647321 36 100.0 36 NNNNNNNNNN .................................... GCGAAGGCGGACGCGCGCAACCTAGACCACGACCTG 6647393 36 100.0 35 NNNNNNNNNN .................................... GCCGAGCAGTTCGGCGCGTTGACGGTAGAGCGCAG 6647464 36 100.0 37 NNNNNNNNNN .................................... CACACGTCGGAGACAGTCGAACTCGACATCCAGCGCA 6647537 36 100.0 37 NNNNNNNNNN .................................... TTCGCGCTGCGCTTGGAGTTGGACCATTCGCGGCGCA 6647610 36 100.0 38 NNNNNNNNNN .................................... GTATTTTCGGAGTAGCGCTATGACGCCGTCATATGCAG 6647684 36 100.0 36 NNNNNNNNNN .................................... GCCACGCTGCGCGTCGCGCGGCGAGGCGTACGGCCG 6647756 36 100.0 36 NNNNNNNNNN .................................... CGAGTTCAGCGGGACCTTGGTGAGAACCGCGATAAC 6647828 36 100.0 35 NNNNNNNNNN .................................... TAGTCACTGGGCTTCATCGGCGGCACCTCGACGCG 6647899 36 100.0 36 NNNNNNNNNN .................................... GCGCCACCGCCGCGTGGGCTGTCGCTGGCCATCTCC 6647971 36 100.0 35 NNNNNNNNNN .................................... GGATCCATACCCCGAGACCTTGATCAGGCCTCGAT 6648042 36 100.0 35 NNNNNNNNNN .................................... CCTAGCTTATTGACCGTTGAAGTGCACTGCGCCAG 6648113 36 100.0 37 NNNNNNNNNN .................................... AAAGACAAGAACCTCTCCGCCGATCGAGCGGTAGAAG 6648186 36 100.0 34 NNNNNNNNNN .................................... CGCGAGCCCGGGATGTATACACCCCCAGGCGGTG 6648256 36 100.0 36 NNNNNNNNNN .................................... GGGTGTGATAGAAGCCCGCGGCGCAGGATCGATATC 6648328 36 100.0 35 NNNNNNNNNN .................................... ATGTACGTATCCGTCCAAGCGGACCATTTACGCTT 6648399 36 100.0 37 NNNNNNNNNN .................................... ATCACCCTAGCTTCGAAGGCCACCGACCAGCGCCGCG 6648472 36 100.0 36 NNNNNNNNNN .................................... CAGGTAGCGCGGGCGCTGGCGGGCGATCCATAGTGG 6648544 36 100.0 37 NNNNNNNNNN .................................... GTCCTCGGCGTCGATCTCAGCCAACCAGCGCAGGAGG 6648617 36 100.0 39 NNNNNNNNNN .................................... GACACCGAAGGTGGGTCTCGATACCTCAGCGCCCGTGTG 6648692 36 100.0 36 NNNNNNNNNN .................................... CGGATACTGTTTTCCGCGCGCTCGCGCGCTGGTCAT 6648764 36 100.0 37 NNNNNNNNNN .................................... CAGCAAGGGCACGAGCCATCCGCGCACGTGTGCACCC 6648837 36 100.0 36 NNNNNNNNNN .................................... TAATTTGGACACTCGTCTCGAAAGCGCCTTCGACGC 6648909 36 100.0 35 NNNNNNNNNN .................................... CTGAACAACGCTATTACCGATCGCGGCTGCGGCGT 6648980 36 100.0 37 NNNNNNNNNN .................................... TACGTCGTCTGCGGCGCGAATCCGCGCCGAGGCCATC 6649053 36 100.0 37 NNNNNNNNNN .................................... CTCTGCGACACGCCGCTCTCGCGCCGCCGCGCGTCGC 6649126 36 100.0 37 NNNNNNNNNN .................................... AGCAAGGTCATCATTCTCGACCGCGACGTCCGCGCTG 6649199 36 100.0 37 NNNNNNNNNN .................................... GCTCGCAGCGCCAACTCGCTGAAGCTGGCCTCGGCAG 6649272 36 100.0 35 NNNNNNNNNN .................................... TCCACACGGTCGAGATAGCGTGCCGTGAGGCGCTG 6649343 36 100.0 37 NNNNNNNNNN .................................... GACCCATGCTCGAAGACTGCCGCGTGATCAGGTGTAT 6649416 36 100.0 36 NNNNNNNNNN .................................... GGCCAAGATGTGGACCTGACGGACACGATGGCTTGG 6649488 36 100.0 37 NNNNNNNNNN .................................... CCGTGGTGGATCGCAGGATCCGGCAACGCCTGGACGG 6649561 36 100.0 36 NNNNNNNNNN .................................... TCCGAGGCCGTGGTGGTGACCTCGCCGGCAGATGAA 6649633 36 100.0 38 NNNNNNNNNN .................................... TCAGCGAAGAGGCAGCCACCGCCCTCAACGCGAAAAGC 6649707 36 100.0 38 NNNNNNNNNN .................................... TTCGTCAAGCGAGGATACGGCGGGCCGTCGAAGAGGGC 6649781 36 100.0 35 NNNNNNNNNN .................................... CATTCAGTCGCAGGGCGTCCGCAAAGTTCCCGCCG 6649852 36 100.0 36 NNNNNNNNNN .................................... CGACGATCCTGACGCCGCAGCGGAGGCCGCGGCGAG 6649924 36 100.0 35 NNNNNNNNNN .................................... AGCTCGGCGTGCTTGCGGGCGAGACCGTCGACGAC 6649995 36 100.0 36 NNNNNNNNNN .................................... TTCGCCGGACTTGGAGGTGTTGCAGCCACGTCCGTA 6650067 36 100.0 36 NNNNNNNNNN .................................... GACGTCTACGTTGCTCGGCACGCCCACAAAGGTTCT 6650139 36 100.0 36 NNNNNNNNNN .................................... GAACGGGAACTGCGTGGGTGGAGTATAGATGACTTC 6650211 36 100.0 35 NNNNNNNNNN .................................... TCGACCGCGCGATCGCCCCCGCCAACCTGCTCAAC 6650282 36 100.0 37 NNNNNNNNNN .................................... ACGAGCTTCTGTAGCTCTGCGCGCGGCATTGCCGAGG 6650355 36 100.0 36 NNNNNNNNNN .................................... GTGATCCGCTGCGTGATGTATCGCGACGGCCCGTAC 6650427 36 100.0 35 NNNNNNNNNN .................................... CCAGGTACTTGAGCGCCCCGCGAGGGGCCAATGAG 6650498 36 100.0 34 NNNNNNNNNN .................................... CACCATGCATGAGTTTTCTATTTTGCGCAGTGTC 6650568 36 100.0 36 NNNNNNNNNN .................................... GTAGGTCAGACGCCTGCATGTCCGGCATGTCAGGGA 6650640 36 100.0 36 NNNNNNNNNN .................................... AGCCGTGTCGAGCGCGCTGTGCTCACGGAGATCAGG 6650712 36 100.0 36 NNNNNNNNNN .................................... CTGTCGGAGCCCGCCCCGGACGAGACCGCCTCGGGC 6650784 36 100.0 37 NNNNNNNNNN .................................... GAGGCGATATCCGCGGCCTCGGCCGAACCGGCGGCGC 6650857 36 100.0 36 NNNNNNNNNN .................................... CTCGTCGAGGTCCGAGTACTCGGCGTTCATTGCCCG 6650929 36 100.0 36 NNNNNNNNNN .................................... CTCGTTGTCCGGGTGGACGATCTCGCGCTGCGCGAT 6651001 36 100.0 37 NNNNNNNNNN .................................... GACGTGTCAGCGACCGCGAAAGCGTCCGCCGGGTCGC 6651074 36 100.0 35 NNNNNNNNNN .................................... GTACACCTCTGCGGTAGACCAGCACGGATTGAGCC 6651145 36 100.0 37 NNNNNNNNNN .................................... GGCGGCGACCGGCGACTGGCGTCCACCGCGCCGGACT 6651218 36 100.0 35 NNNNNNNNNN .................................... GTCGTCATCGCCGATCAGGCCGAGGAACCGAGCGG 6651289 36 100.0 36 NNNNNNNNNN .................................... GTTTACCCGGCCGTCGGGTAGCGGTAAACTCTGGCG 6651361 36 100.0 37 NNNNNNNNNN .................................... TTATTACGCAGAGGTCGAGGCGACCGGCGGTGGCACA 6651434 36 100.0 36 NNNNNNNNNN .................................... CTACCCTCTATAGGAGATTCTCATGACACCACTCGA 6651506 36 100.0 39 NNNNNNNNNN .................................... TAAGCGCAGTCGCGTGAGCGTGGCGCCCAGTGGCGGGTT 6651581 36 100.0 37 NNNNNNNNNN .................................... GTATAAAGACCCCAGCACCGGCAACACGACGTACTAC 6651654 36 100.0 34 NNNNNNNNNN .................................... GTGCTGACGAAGCGCCCGGAACGGATGAAGCAGT 6651724 36 100.0 35 NNNNNNNNNN .................................... CAGAGACGGGCCTGGACACCTGGCACTGTCGACTA 6651795 36 100.0 38 NNNNNNNNNN .................................... GTCCGGCGAAAAACCTAGATTCTTCGCCGCGACCGCGC 6651869 36 100.0 37 NNNNNNNNNN .................................... ACATGGGCTGTCGCGCGATCGATGCCGGATCGCGAAC 6651942 36 100.0 37 NNNNNNNNNN .................................... CTTATGCGCCCGTTGACGACCCCATGGGCTTGGTCGA 6652015 36 100.0 40 NNNNNNNNNN .................................... CGCTCCTCACCGGAGCGCCGACCCCCCTGCCGATCGACGA 6652091 36 100.0 35 NNNNNNNNNN .................................... CGTGCCTGTGCTCGCCGTCGGTAAGAAGGCCGCAG 6652162 36 100.0 37 NNNNNNNNNN .................................... CAGGGCGCCATGTTCGCACGCCGCTGTCATCGCGAGA 6652235 36 100.0 35 NNNNNNNNNN .................................... TTCGCGGTCGGATTGGTCGTCGGCTGATCGTCGGG 6652306 36 100.0 38 NNNNNNNNNN .................................... CCGCCAGCGCGTCACGCGTCATGCGTGCGGCCGAGCGA 6652380 36 100.0 36 NNNNNNNNNN .................................... GCGCTGTACCCGGACATTTCCGCCAGCGCGTCACGC 6652452 36 100.0 35 NNNNNNNNNN .................................... TGCGAGCGCGCCGAGTTGGCGCTACCGGCCCAGTT 6652523 36 100.0 36 NNNNNNNNNN .................................... GCGTGTCCACGTCTATCAGCTCGGCCACGCAAGCCT 6652595 36 100.0 35 NNNNNNNNNN .................................... ATTTTTCCACGATTTCCTTCCACTATGGATATCAC 6652666 36 100.0 40 NNNNNNNNNN .................................... CTCCGGCCGCTGGCGCTGGCGCAGAAGCTGGGCGCATGGC 6652742 36 100.0 39 NNNNNNNNNN .................................... GCGACCGCATCTGGGGGAGAGCGTGCGCGTCAACGTGAC 6652817 36 100.0 35 NNNNNNNNNN .................................... CGCGAGCTGTCGCGATCGTCGCGCCGACGTCCTCG 6652888 36 100.0 38 NNNNNNNNNN .................................... AATCAGGACCTGCTCGCCCTGGCGATGTTCCCGAACGC 6652962 36 100.0 36 NNNNNNNNNN .................................... GCCTCCATGGTCCTGCCCGCTGGCACAATGCCGACG 6653034 36 100.0 34 NNNNNNNNNN .................................... GTGCAGAGTGGCTCGTCCCCCGCATGGTACGGGT 6653104 36 100.0 36 NNNNNNNNNN .................................... GCGCGGAGAATGAACCCGCGGCCGATGTGATGGCGA 6653176 36 100.0 37 NNNNNNNNNN .................................... CGGGGCGCGTAGGGCTGCGTCCAACATGACCCCATAA 6653249 36 100.0 36 NNNNNNNNNN .................................... ATGTCCCCGAGGTCTTGCTCGGACGTCGATATCCTT 6653321 36 100.0 35 NNNNNNNNNN .................................... GCCGAGGAGTCACGGGCCCGGGAGGAGATGCGCGC 6653392 36 100.0 36 NNNNNNNNNN .................................... GCGTGCTCGAGCCCGACTACCTCGACGAGTCTCGGC 6653464 36 100.0 37 NNNNNNNNNN .................................... CAATAACAACTACCGCGTGCTGTCGTGGGACAGGGCG 6653537 36 100.0 37 NNNNNNNNNN .................................... CTTGTCGGGTGGCACTGGAGCCGCCCACTAACCCAGG 6653610 36 100.0 36 NNNNNNNNNN .................................... GGTTCGGACCTCGGAAACGCAACGCCGCAGACGTTG 6653682 36 100.0 37 NNNNNNNNNN .................................... GTGGGCGGCTCCAGTGCCGCCCGACACAGAGGACTCT 6653755 36 100.0 37 NNNNNNNNNN .................................... GCGCGCAACCCGCAGATTGCTGGCGACCCGCCGCTGC 6653828 36 100.0 36 NNNNNNNNNN .................................... CATATCCATCTTAGGCAGACGCTGTCCGTCGAGGAA 6653900 36 100.0 36 NNNNNNNNNN .................................... GCGTCCACCGCGACCCACGACGCGCCCAGGCCGAGC 6653972 36 100.0 39 NNNNNNNNNN .................................... ATCTCGAGCCCCTCAACGGCCACCCCCGACCACGTGTAC 6654047 36 100.0 40 NNNNNNNNNN .................................... CCACTCTTCGCGTGCGGCAAAGGCCACGTCATTCAGCGCC 6654123 36 100.0 36 NNNNNNNNNN .................................... CGGCGGCCTCCCCCTGCGCGGCTGGTGGCGATGTCC 6654195 36 100.0 38 NNNNNNNNNN .................................... CAGCGCATGTTGCGTCTCATGGACCTCGAGCACAAATT 6654269 36 100.0 37 NNNNNNNNNN .................................... AGCAGAATCGTTGCTGGGCCGATGGCTCGTGCGCCGA 6654342 36 100.0 36 NNNNNNNNNN .................................... GCAGCGTGCAGCCCTACCTGCGCACGCAGGAGGAGG 6654414 36 100.0 37 NNNNNNNNNN .................................... GTCCAGATGTCCGAATTCTCCATGATTTCTCTCCGTT 6654487 36 100.0 36 NNNNNNNNNN .................................... TATTTTTGCTGGACGTTGTTCCGCTGTGCGTATACG 6654559 36 100.0 36 NNNNNNNNNN .................................... CCTCAAGCCATTGCATGCGCGACTCGAGTGATCCGT 6654631 36 100.0 35 NNNNNNNNNN .................................... ATGTCGAGCGCAAGAAGTCCGTCCAGTCGCTCGGA 6654702 36 100.0 37 NNNNNNNNNN .................................... TTGGCGCCGCCCTCTTGAGACCGCTGAACGGGCCCAG 6654775 36 100.0 38 NNNNNNNNNN .................................... CAGATACTGCTGGTCGCCGCGCGTGTCGTCGATTTCGA 6654849 36 100.0 35 NNNNNNNNNN .................................... AGACGGACTTTGGAGGCTGATCGTGGTAGACGCAT 6654920 36 100.0 37 NNNNNNNNNN .................................... TCAAGAGGGCGGCGCCAAGAAGGAGCGAGCGATGGAT 6654993 36 100.0 37 NNNNNNNNNN .................................... GCTGCGTGTGCGCGAGCACCGCAGCACGCTGGAAATC 6655066 36 100.0 36 NNNNNNNNNN .................................... TGGGTGAGCCGCACGACAATCTCGCCGCTATGGCTG 6655138 36 100.0 38 NNNNNNNNNN .................................... CAATCAGCTCTTTATTGGCCCTTGCCCACTCCGTTATA 6655212 36 100.0 36 NNNNNNNNNN .................................... CCGGTCAAGGGCGTCGCGCAGAGCGAGCGAGCGCGT 6655284 36 100.0 37 NNNNNNNNNN .................................... GACGAACAACTCGACCGCGGCCGTGACCCTGTCCGGG 6655357 36 100.0 35 NNNNNNNNNN .................................... TGTGTTTCCCGCCGATACCCCGCAATGGCGGGTGC 6655428 36 100.0 34 NNNNNNNNNN .................................... AGGCATGGGACGTCGAGAACGACCGCGTGCGCGA 6655498 36 100.0 37 NNNNNNNNNN .................................... TTCACGGCTGCTCACAGGCACGGTCCCGCCTCTCTGC 6655571 36 100.0 36 NNNNNNNNNN .................................... CGGGTCATGGCCGCGGCCTGATACTCGGCCGTCAGC 6655643 36 100.0 37 NNNNNNNNNN .................................... ACCTCGCCTTCGCACATCCACGCCAGCCACGCGCAGT 6655716 36 100.0 35 NNNNNNNNNN .................................... GCGCAGCTCGACAACCAGTGAGGAGCGCATGAGCG 6655787 36 100.0 36 NNNNNNNNNN .................................... ACGCTCAGCGAGGCGAACCTGCTGAGCGTGCTGGTC 6655859 36 100.0 42 NNNNNNNNNN .................................... ATCAACGTGTTGCGCACTCACGTAGCTGCTCTGTCACCGGGC 6655937 36 100.0 37 NNNNNNNNNN .................................... CGCCTACGAGTGTTCTGCGCGAGCACCGCCGACTGGC 6656010 36 100.0 36 NNNNNNNNNN .................................... CCCCGGGCGGGATGGCCACGGAGAACGAGTCGCCAA 6656082 36 100.0 38 NNNNNNNNNN .................................... GCGCATCCGCTCCAGGGGTTGAACGTGTAGCCGGGCTC 6656156 36 100.0 36 NNNNNNNNNN .................................... GCGCTCGTCGCCGAGCACTTCGACGGACGCGTCGAA 6656228 36 100.0 37 NNNNNNNNNN .................................... GTCTACACGTCGCGCGCCGTTGTGAAGCTGCTCGCCA 6656301 36 100.0 35 NNNNNNNNNN .................................... TTGTTGTGAGCCCGGACGCCCGCGCAGTCACCCGC 6656372 36 100.0 39 NNNNNNNNNN .................................... TAGCTGCTTGCGCCGTCCTTCGAGCCTGGCACTGAGGTC 6656447 36 100.0 42 NNNNNNNNNN .................................... GATCGACCCGGGCGACCCCGCGCTCGCCGACATCGACAGCGA 6656525 36 100.0 36 NNNNNNNNNN .................................... GCCCTGCCTTGGACGCGCCAGTCGAGGAGCCCCTGT 6656597 36 100.0 35 NNNNNNNNNN .................................... CGCACGGGGGCGCCCGAAGTACTCCGAGAGCACGA 6656668 36 100.0 34 NNNNNNNNNN .................................... GCCCGGCTGCCGGCTAGGCCGAGGCCGCTCACGA 6656738 36 100.0 36 NNNNNNNNNN .................................... CCAGAAGAAGTGCACGATCTCGGCATCGGTAGCCAG 6656810 36 100.0 36 NNNNNNNNNN .................................... GCTTCGATCGCACCCACGGTCGCCACTTCCCCGGCG 6656882 36 100.0 37 NNNNNNNNNN .................................... GGGCCGCGACGCCCGTGGGTGGGGGCAGGGAGTCCAG 6656955 36 100.0 37 NNNNNNNNNN .................................... ACCCATGGCGGCGTCGGCCGCGGCGATGGCCACTTGC 6657028 36 100.0 39 NNNNNNNNNN .................................... GACGCTGCTGCCGTTGTCATCGAGATCAGCGCGGAGGGC 6657103 36 100.0 35 NNNNNNNNNN .................................... ACTCGGACCGGGGGGCTGAATTCCAGCAGCGATTT 6657174 36 100.0 37 NNNNNNNNNN .................................... AGCCGGCGGGTGCGGTCGCGCAAGAACATCAAGGCGG 6657247 36 100.0 38 NNNNNNNNNN .................................... GGCGCAACCCATCCCCGAGAATCGTCTCGAGTTCCCTC 6657321 36 100.0 38 NNNNNNNNNN .................................... CTGTTGTACGAAAACTGGGACGCCATCAGCGCCAAGTT 6657395 36 100.0 38 NNNNNNNNNN .................................... ACGGCCTGGGCAGTGTAGCGCGTAGCAGAAGCTGCCCC 6657469 36 100.0 37 NNNNNNNNNN .................................... GCGGTCGGCTCGCCCACTAATTCGGTGAGCGCAGGGC 6657542 36 100.0 38 NNNNNNNNNN .................................... TACCCGCTATCGATTGCCAACACGGCGACCTGAAACTC 6657616 36 100.0 36 NNNNNNNNNN .................................... GATTCGTCCATCAGATGCTCCGCAGCGACGTTTGCC 6657688 36 100.0 36 NNNNNNNNNN .................................... TCGCCAACAAATCATTGACCGCCGCCAGATTTTTGC 6657760 36 100.0 35 NNNNNNNNNN .................................... GCGAAATCGACAGAGAAGTCGATGCGTCAGATGTC 6657831 36 100.0 41 NNNNNNNNNN .................................... ACGAACAAAGAAACGACTGGAAGACAAAGTTAACTGATATT 6657908 36 100.0 34 NNNNNNNNNN .................................... GGTGGATCCTTGCCCGTTCGAGGCAGGTGGTGAG 6657978 36 100.0 36 NNNNNNNNNN .................................... TACAGAATCACTTGTGTCTCCGAGCGAGAACGCGTT 6658050 36 100.0 37 NNNNNNNNNN .................................... CGCTCACCAATGTGTCGTTAGACTGGCCAAGCTGCGC 6658123 36 100.0 37 NNNNNNNNNN .................................... ACTTTCCGGCGCCCGCCGCTCTCTTGCCCGTAGATGC 6658196 36 100.0 36 NNNNNNNNNN .................................... GGCGACCTCGGCGTGCTGGCTGGCGCTCAGGCGCCG 6658268 36 100.0 39 NNNNNNNNNN .................................... ACCGCGGGCCAGACTGGCGCACTGGGACGCAGACCGCGC 6658343 36 100.0 38 NNNNNNNNNN .................................... CATTGGGTTAACGTCAAGGCCGTTAGGCATTACCGAAT 6658417 36 100.0 37 NNNNNNNNNN .................................... GCCGTCAGTCGCGGGCAGGTTCTGCGCCGCATGCGCC 6658490 36 100.0 35 NNNNNNNNNN .................................... GATTCGCCGTCGATTTCAAACTCGGAGAGCGTCTC 6658561 36 100.0 35 NNNNNNNNNN .................................... AACACTTACGAGAGCGCCCGCATCTTCTAAGCCCC 6658632 36 100.0 37 NNNNNNNNNN .................................... CGCATTCTTGGCGCAGTTCACATACTTGGCGCAGTTG 6658705 36 100.0 36 NNNNNNNNNN .................................... CAGAGATCGCGAGCGAGTGCTTGCGAGTGTTGAAAC 6658777 36 100.0 36 NNNNNNNNNN .................................... TCTTTCCATGAAAGCGATTCCAAGCTGCGGGATCAA 6658849 36 100.0 37 NNNNNNNNNN .................................... GCAAGACAGCTTGATCGCGGGGGAGGATCTTCGACAG 6658922 36 100.0 36 NNNNNNNNNN .................................... CGCGCAGACTACGACATCCGGACAAAGCCCGGAATC 6658994 36 100.0 36 NNNNNNNNNN .................................... CCATTCAGCGCTTGGCTGAGCAGCTCGCCCCCGAGA 6659066 36 100.0 37 NNNNNNNNNN .................................... AAGCAAGGTGGGAGCTTTGGCATCCGTGGTTTGGGCG 6659139 36 100.0 37 NNNNNNNNNN .................................... AATCCGCCAGGCCGCCCGCGTGCCACCAAATATGCTT 6659212 36 100.0 37 NNNNNNNNNN .................................... ACTGTGTCCGCGGTGCTGAGCCCTTCGCGAATCGTTG 6659285 36 100.0 36 NNNNNNNNNN .................................... ATTCCGGCGAGCGCCGCGCCCGCTCGGACGCGGCCG 6659357 36 100.0 38 NNNNNNNNNN .................................... GCCTACCGCAGACGCGGCTGAACGCCGCGGAAAGGCAG 6659431 36 100.0 35 NNNNNNNNNN .................................... ATCTGGTGTTCGGTCTCGGCGGTGCATGCTCCGAG 6659502 36 100.0 36 NNNNNNNNNN .................................... CAAATCGGAGTTCCATGATGGAGTGGGCTGAGGTTG 6659574 36 100.0 35 NNNNNNNNNN .................................... AATCATACTGGTTGATAAAGGCACCCCCTCTCGCG 6659645 36 100.0 36 NNNNNNNNNN .................................... GCGGCTGTGCACGAGGACGGCGGCACAGCCGTGCGC 6659717 36 100.0 35 NNNNNNNNNN .................................... TTGCGAGCGAACAGGTCGTGGACCACCTCGGAGAC 6659788 36 100.0 35 NNNNNNNNNN .................................... ACCACGGTCTTGCTGGTGTAGAGCACGGTCTCATC 6659859 36 100.0 36 NNNNNNNNNN .................................... GACGAATGTAAGTGTGAAGCAACTGCGCATGGCGCT 6659931 36 100.0 35 NNNNNNNNNN .................................... CGGGAGATCCTCGACCAGCTCGGCGAGTCGAGGCT 6660002 36 100.0 37 NNNNNNNNNN .................................... CGTCACGGAACGCTTCGGCGTGTCTGCCGGCATGCTT 6660075 36 100.0 35 NNNNNNNNNN .................................... ATCCTCGTTAAGCACGCGCTAGGCCAGCGCAAACA 6660146 36 100.0 38 NNNNNNNNNN .................................... GATCGGGCGCTACTGCTTTGATCGCGTTGATCACGTTA 6660220 36 100.0 38 NNNNNNNNNN .................................... TCCAGTAATACGCGCCAAAGTGTGGGATTGGTTCACTT 6660294 36 100.0 36 NNNNNNNNNN .................................... TAGACCCAAAGGATGGAGACTGGTTCTGCGAGCGCG 6660366 36 100.0 36 NNNNNNNNNN .................................... TCCAGCTCGCGCATGCCGAGCCGCATTTCCCTCGCC 6660438 36 100.0 40 NNNNNNNNNN .................................... GCGACGGTTCGACGACGTGGAGCGACGTGACCGCCGAGGA 6660514 36 100.0 35 NNNNNNNNNN .................................... GACCTGGCGTCCGAACTGTACGGCGACGTGGTGGA 6660585 36 100.0 35 NNNNNNNNNN .................................... TTCAATCACCAGGCCAGGGATCATGCTGGCCGAGC 6660656 36 100.0 35 NNNNNNNNNN .................................... TTCTCGACCAGGCCGGCAAAATGCGCGGCCTGCTG 6660727 36 100.0 39 NNNNNNNNNN .................................... CGCGGCGTCATCGCCAGCGACATTTCGCATGCTGACGAG 6660802 36 100.0 35 NNNNNNNNNN .................................... GCCAAGACGTTGCCTTGCCAGTTGGTATAGGTCGC 6660873 36 100.0 35 NNNNNNNNNN .................................... TACAAATTCCGTGCCTTTCATCCCGACAGCTTCGA 6660944 36 100.0 36 NNNNNNNNNN .................................... TAATAAGCATCTGCGAAAACAGCTAATTACCGCGTT 6661016 36 100.0 35 NNNNNNNNNN .................................... CAACACAAGGGGGGGGGCTTTTGATTTTCGGCCTT 6661087 36 100.0 36 NNNNNNNNNN .................................... GAAAAGCCCTTGTTGAGCAACGAAACCCAGACCTTA 6661159 36 100.0 36 NNNNNNNNNN .................................... GCAGCGCAAAGGGCCGAACAAGACGCCGATGATCAA 6661231 36 100.0 35 NNNNNNNNNN .................................... TCAATATAGATGTTTGAAAATCGTGTTGGGCACGG 6661302 36 100.0 35 NNNNNNNNNN .................................... TCCTTTGCGAAGAACGTGGATACGCCCTCTTTGCC 6661373 36 100.0 35 NNNNNNNNNN .................................... TCACCCACCTCGGAGCGGGCGGCCTCCAAGGCCGC 6661444 36 100.0 35 NNNNNNNNNN .................................... GTGTATTCTCCGGCTACTGCGCTCGAGTTCCCGCT 6661515 36 100.0 36 NNNNNNNNNN .................................... AAACTCGGCAACGCCAGCGAGCGCGGTGAGTTGGAT 6661587 36 100.0 35 NNNNNNNNNN .................................... AACAAGGTGTCGGATCTCACCTACGCCCTGATCGG 6661658 36 100.0 34 NNNNNNNNNN .................................... CAGGCTGCGTCGCTCCTGGGTGAGCCGCACGACA 6661728 36 100.0 36 NNNNNNNNNN .................................... GGTTGCCTGGACACCGTGCCCTAACGGGCGCCAAAG 6661800 36 100.0 36 NNNNNNNNNN .................................... GGCGAGCGGTATTCGAATTTGCTGGAGTCGATGGGG 6661872 36 100.0 37 NNNNNNNNNN .................................... ACCGTAGGGTGCCGATTTCTGCGCCCGCCCGTACGAC 6661945 36 100.0 35 NNNNNNNNNN .................................... TGAGGGTGCCGAACTTGACAGCCGCAGGAAAACGC 6662016 36 100.0 36 NNNNNNNNNN .................................... CGATCATAAGATCGATCAAAGACCCGTCGCATAGGA 6662088 36 100.0 36 NNNNNNNNNN .................................... CAAACAGTTAATGCCACTGGGCCGCACGCTTCTGGC 6662160 36 100.0 37 NNNNNNNNNN .................................... TCAGCGAACCGTTCGACGCTATTTAATACAAGTAGAC 6662233 36 100.0 38 NNNNNNNNNN .................................... ATCAAGCTAAAAGCTCCGAGGGCAGTAAAAGAGTCTAT 6662307 36 100.0 36 NNNNNNNNNN .................................... CGCGCTTACGTGCGTGAACTTGACGCGCGTGAACGG 6662379 36 100.0 35 NNNNNNNNNN .................................... TGGATATCGCCCCGGGGATGCGCCCCGCGAAGTGC 6662450 36 100.0 35 NNNNNNNNNN .................................... ATCCACACCGACGGCAAAAGTCGGCCTCAGGTCGC 6662521 36 100.0 36 NNNNNNNNNN .................................... GGGCGACCACCGGCCGGCGGCTTTCGCGCGTCGTGC 6662593 36 100.0 38 NNNNNNNNNN .................................... GTGCCGACGGGGGCCGGGTGAGCTGGCAAACGCGACTG 6662667 36 100.0 38 NNNNNNNNNN .................................... ACGGCGCTGAATTCCGTAGCTGCCCCGACGTCTGCTGG 6662741 36 100.0 36 NNNNNNNNNN .................................... TCGCCAACAAATCATTGACCGCCGCCAGATTTTTGC 6662813 36 100.0 39 NNNNNNNNNN .................................... AGCTTGCGCGCCGCGCAGAGGAGGCAGCGCGAATATGTT 6662888 36 100.0 37 NNNNNNNNNN .................................... AGCGCCTGCCGCGCTGCGTACGGCACCCCCTTGTCGG 6662961 36 100.0 37 NNNNNNNNNN .................................... GCGGCCGCCCTGTGGCGCTTGACGGACTGCTGTGGCT 6663034 36 100.0 35 NNNNNNNNNN .................................... TGTTTCGCTCCCGCGGTATCCTCGCAAAATGTCGG 6663105 36 100.0 35 NNNNNNNNNN .................................... CGGTGCTCGCGCACACGCAGCGAAAAAACCAGGTT 6663176 36 100.0 35 NNNNNNNNNN .................................... GATGCCGTGCCGACGGGTGACCTGCGGCGCGATGA 6663247 36 100.0 37 NNNNNNNNNN .................................... CCGAGCCGACGCGAGCAACGCGAACGTAGGAACCGCG 6663320 36 100.0 36 NNNNNNNNNN .................................... GAGGCAGAACAGGGATAACAGCGGCCGCAACGTCGC 6663392 36 100.0 35 NNNNNNNNNN .................................... GAACAGGCCATCCACTGTGCCACCCGGAGAATCAA 6663463 36 100.0 38 NNNNNNNNNN .................................... TCGGCGCCCCAATTCGTGCGCTTCGCGCTCGTACGGGG 6663537 36 100.0 36 NNNNNNNNNN .................................... CCACGCCCGTACCTTGCCGCGGCGCTCTCGGGCTGT 6663609 36 100.0 37 NNNNNNNNNN .................................... CCGACGGCTACCCTGCGGCACCTGCGGCGATTCGGTG 6663682 36 100.0 36 NNNNNNNNNN .................................... TTGGTGGTGACGTGCGCTGTCGACGTGCAGGCTCGC 6663754 36 100.0 35 NNNNNNNNNN .................................... TGAGCGGCGCCCTCGGGGTAGCCCACGAGGTCGCT 6663825 36 100.0 36 NNNNNNNNNN .................................... CTGGCGATTGGGCGAATCGCGGCCGAAGCATGGGGC 6663897 36 100.0 38 NNNNNNNNNN .................................... CATACGTCCGAGACGGTCGAACTCGACATCCTGCGCGC 6663971 36 100.0 36 NNNNNNNNNN .................................... AAGACAGCCATCGCTATTGAGGCTACCTTGATTGCA 6664043 36 100.0 35 NNNNNNNNNN .................................... CGCAGACGCCGTGTCCGAAATAATCGCTGCCAGCC 6664114 36 100.0 36 NNNNNNNNNN .................................... GACCGTCTCGGACGTATGGAAGTTGCGGCGTGGAGT 6664186 36 100.0 38 NNNNNNNNNN .................................... GCTGCGTGTGCGCGAGCACCGCAGCACGCTGGAAATCA 6664260 36 100.0 35 NNNNNNNNNN .................................... GCTGTGGGGCTGCCCGGACTGCTCCGGCGAACCGC 6664331 36 100.0 37 NNNNNNNNNN .................................... TATCGCAAGTTCGATCGGGTCGCCCTCTGTTCCTGCG 6664404 36 100.0 36 NNNNNNNNNN .................................... AAGTTTTCCGCGAATGTCTCCCTTCACGCGAGTGAC 6664476 36 100.0 35 NNNNNNNNNN .................................... GCAAAACGCGCCGGAGTGAGCCGCCAGGCCGTCAG 6664547 36 100.0 36 NNNNNNNNNN .................................... CCCGCCACTGAGCGCGCTGCGCTGCTCTCCCTGATG 6664619 36 100.0 35 NNNNNNNNNN .................................... CACTCGGCGCCGTCGACGCGCCAGCCCTCCTGCAT 6664690 36 100.0 37 NNNNNNNNNN .................................... GGCCGAGGTGACCCGAAAGAATCGAGAGGAGATCGAG 6664763 36 100.0 36 NNNNNNNNNN .................................... GAGCCGCGCTGTGCGGAACCTGCCTGCTGCAGGAGT 6664835 36 100.0 36 NNNNNNNNNN .................................... CGTGATTCGCGACCAATATACGTCGCGCAAGAAATT 6664907 36 100.0 36 NNNNNNNNNN .................................... TGTCGGTGGCAACCCCGTGTTACCCCCTGACAGATA 6664979 36 100.0 35 NNNNNNNNNN .................................... GTAGATGTGCTGACACTACTGGTAGTTGTATCAGT 6665050 36 100.0 37 NNNNNNNNNN .................................... CTGGGGTAGTCGCCGAGGGCCGGGAATCGATCCCGTG 6665123 36 100.0 36 NNNNNNNNNN .................................... ACGCGGCGCAGTTCGCGTTTCGACTCTAGGAGCAGG 6665195 36 100.0 37 NNNNNNNNNN .................................... GTTGTTGTCTCGAGGATGAAGTCCGTGGCCTGCGGTT 6665268 36 100.0 36 NNNNNNNNNN .................................... TCTGTGAGCCCCCGCTTGAGCGCGCGCATCTCGTGA 6665340 36 100.0 36 NNNNNNNNNN .................................... AGGCCTGAATCGCAATGCAGCGCTATCACTAAGTGA 6665412 36 100.0 36 NNNNNNNNNN ...................................T ACCGCAAAAACAATAATAAAAATTGACAGCGATGGA 6665484 36 100.0 35 NNNNNNNNNN .................................... GCATCATCTAGCACTACGTAAATCGCTGGCGTATC 6665555 36 100.0 35 NNNNNNNNNN .................................... ATATCGAATGGACGAATCGCGAGGCTCGACTTACG 6665626 36 100.0 36 NNNNNNNNNN .................................... TTCCCCGCGCGAACCTGTTCAACGGCCAGGTTACGT 6665698 36 100.0 37 NNNNNNNNNN .................................... GTACGCAAATGGAAGTTGCGATGAGCACCTCTTTCGA 6665771 36 100.0 37 NNNNNNNNNN .................................... CAGTCAGTACTATTACCTTTAGCCAGTCGCTCGGCCA 6665844 36 100.0 38 NNNNNNNNNN .................................... AGCGCACTGACTGCGCGCGCGGTCTCACCATTCTTGGA 6665918 36 100.0 36 NNNNNNNNNN .................................... CGCTCCTGTACCTGCGCTACAGCTTCCGCACGTAGT 6665990 36 100.0 34 NNNNNNNNNN .................................... AGCCCCCCGGTCCGAGTGAACGCCGCTCCGACGT 6666060 36 100.0 36 NNNNNNNNNN .................................... CAGCGACTGCACACCGTCCGCGCCGGTGTTGAGCAG 6666132 36 100.0 36 NNNNNNNNNN .................................... CGCTCAAGAGCGACCTGCAGGCACTGTATGATGCTG 6666204 36 100.0 35 NNNNNNNNNN .................................... AGTGGGCGCGCCGAGCGGGCAATCACGCCCCTTTA 6666275 36 100.0 37 NNNNNNNNNN .................................... CGGGACAGCCCGTGACCTGTCGCGTAGGCGCCGGCGG 6666348 36 100.0 38 NNNNNNNNNN .................................... GCCCCATGACATGGCGCGAAGAACTCGGCCGCGTGCAG 6666422 36 100.0 36 NNNNNNNNNN .................................... AGCGCTGCTGGCGGGCCCATGCACGAACTGCCGCGG 6666494 36 100.0 37 NNNNNNNNNN .................................... CGCCGCGTTGTTGATGCCGTCCTGCCCGTCGAGATTG 6666567 36 100.0 38 NNNNNNNNNN .................................... GTCGCCTCCGCGGACGTGGCTGTGCTCGCGCGAGGGTT 6666641 36 100.0 35 NNNNNNNNNN .................................... TCATGACCCCTCTCGACCTCGTACACACGTCCGTA 6666712 36 100.0 37 NNNNNNNNNN .................................... CACGCCGATCACGGCAACATCGGGACGGGGGCGGCTC 6666785 36 100.0 36 NNNNNNNNNN .................................... CTGAGGTTGCCCGCGCGATGATCCGAGTCTCGTACG 6666857 36 100.0 38 NNNNNNNNNN .................................... GCCTTGGCGGCGATTGCCGCGCCATCGTCTCCGACGAC 6666931 36 100.0 36 NNNNNNNNNN .................................... ACCTGAAGTTTCGCGTCAGGCACTCAGCACCTTCAC 6667003 36 100.0 38 NNNNNNNNNN .................................... CGCCTGTCGACGAGTTCGCAGCCGAGGTCGCTGCTGTC 6667077 36 100.0 35 NNNNNNNNNN .................................... AGCGCACGGCCCTCGGCGGCGAGCTGGGCGGGGGT 6667148 36 100.0 38 NNNNNNNNNN .................................... GTCGCCGTCGTGCTGCTCGATGCTCGCGATGACGAACC 6667222 36 100.0 36 NNNNNNNNNN .................................... TTGGTCACCGGCTGAGTACTTCGCGGTTCTTTCCGT 6667294 36 100.0 35 NNNNNNNNNN .................................... TTCAACACGGATACTTTCAGGGAACGCGTACGCTG 6667365 36 100.0 36 NNNNNNNNNN .................................... CAGCGGCATCTACCATGTTAGCAAACGCAACAAGCT 6667437 36 100.0 37 NNNNNNNNNN .................................... GTCACTGTATCGCCATCGGCAAAGAGACGGATAACGG 6667510 36 100.0 35 NNNNNNNNNN .................................... CTGTACGGAGGCCGCGGCTCGGGTAAAAGCTATTT 6667581 36 100.0 37 NNNNNNNNNN .................................... GTCCAGTTCGTGTTTCTGCATTATGCAACTCCAATCA 6667654 36 100.0 38 NNNNNNNNNN .................................... GCCGCGGTCTTTGACGAATCCGCAACCGCGTAATCATC 6667728 36 100.0 39 NNNNNNNNNN .................................... ACTCCTGAACGAATCCAGGCATTCACCGATTTGGTGAGT 6667803 36 100.0 39 NNNNNNNNNN .................................... CGCCCGTAGCGGCGCACACAGCCGAGTAGCGCTATCGAG 6667878 36 100.0 37 NNNNNNNNNN .................................... CCCTTGCGCCGCTTCACCATGGCGGCCGCATGCGCGT 6667951 36 100.0 37 NNNNNNNNNN .................................... GACGCCGCGTGCGCGCTCGAGGTGCGGCCGGACCTGG 6668024 36 100.0 35 NNNNNNNNNN .................................... GTCTCTACGGACATCGGAACCCAGTTCCACAGGTT 6668095 36 100.0 35 NNNNNNNNNN .................................... GACCTGCGCAGGGAGGTCAAGAGGGAGCACGAGGC 6668166 36 100.0 37 NNNNNNNNNN .................................... CCTGGGGCCCGATCGGGCAGGACGGGGCGCCGTGCCG 6668239 36 100.0 36 NNNNNNNNNN .................................... TGCTCTGCGGCGGCTGGGACGGCTGCTCAGACAAGA 6668311 36 100.0 35 NNNNNNNNNN .................................... TCGCCCCGGTCGAGGGCGTCACCCGGCTCGGTCTT 6668382 36 100.0 37 NNNNNNNNNN .................................... GTGCGTCTGGATGCGCATGGGAGGTGTTGCTCGCGGT 6668455 36 100.0 35 NNNNNNNNNN .................................... CTCCACGGGTCCGCCGACCCGTCCGCGGGCAGCAA 6668526 36 100.0 35 NNNNNNNNNN .................................... GACGACCGCGAGGAGACGGTCATGCAGGTCTCCTG 6668597 36 100.0 38 NNNNNNNNNN .................................... GCCTGCTCGGCCAGGGCCAGGGCGCCCGCGCTGCTGTA 6668671 36 100.0 36 NNNNNNNNNN .................................... GCGCAAGTCCACAGGCCCAAGCAGCGGCTCGCACGA 6668743 36 100.0 38 NNNNNNNNNN .................................... GCCTGCGTCCGCGGTGAGCCCGGTGTGTGCTCGGGTTT 6668817 36 100.0 37 NNNNNNNNNN .................................... GCACGATCGCAGGCGAGGTCGCAGACTGGATCGGCGC 6668890 36 100.0 36 NNNNNNNNNN .................................... AACCCAGCGCCCAGGGCGCTGGTGCTTTTCGCGGTC 6668962 36 100.0 39 NNNNNNNNNN .................................... GAGCTGATCACCGACGACGGCAAGGCCGACGTGCTGGTG 6669037 36 100.0 34 NNNNNNNNNN .................................... CACAACCTGGGCGCCCGCCTGGTGTGCGAGGCCC 6669107 36 100.0 39 NNNNNNNNNN .................................... ACGTGTGGGCGATGCTGCCGGGGTTCGACGCATGGGGCG 6669182 36 100.0 36 NNNNNNNNNN .................................... TAGGTGAACGAGCCGATTGCGCGGTAGGTTTCGCCG 6669254 36 100.0 36 NNNNNNNNNN .................................... ACGATAACAGCGCGGCAAAGCGTGCTTGGCACCAGG 6669326 36 100.0 35 NNNNNNNNNN .................................... TCGTCGAGCAAGTCCCCACCGCGCTGCAGATGTCG 6669397 36 100.0 37 NNNNNNNNNN .................................... GGGCGTAGTCTGAAACTCCACGCCGGCCATGCGGTAC 6669470 36 100.0 39 NNNNNNNNNN .................................... GGCCGTGGCCGAGGATCCCAGCTACCCGCTGCCCGTGTC 6669545 36 100.0 34 NNNNNNNNNN .................................... CTCGACCAGGCCGTCGGCCCACGCGCGGGCCTTC 6669615 36 100.0 36 NNNNNNNNNN .................................... AAGGCGGTCGCGCTCGCGGACCACAAGCACCAGATC 6669687 36 100.0 37 NNNNNNNNNN .................................... GTTTGGTCTACAGATTTGACGTTCGCATCAACGACCG 6669760 36 100.0 35 NNNNNNNNNN .................................... GCCTACGGGGAAGAGCCGCAGCACGACGTCGCCGA 6669831 36 100.0 37 NNNNNNNNNN .................................... GATGCGCACCACGGCCATCTACACGTCCACCTTTCGC 6669904 36 100.0 35 NNNNNNNNNN .................................... CCGCTAGACCCGATAGGTACAGACCGGAGACGATG 6669975 36 100.0 36 NNNNNNNNNN .................................... TTACGGACGACTGTCCGAAGTGGACTTTACTTACAT 6670047 36 100.0 35 NNNNNNNNNN .................................... TCGTTGCCGGCGCTCGTGTCCAGGTTCTCCAGCAG 6670118 36 100.0 36 NNNNNNNNNN .................................... AGCGATAGCCCCTCCAGGGACTTCACGTTGTTCAGC 6670190 36 100.0 35 NNNNNNNNNN .................................... CGCCGCGATACTGATAGGAGGGGGGTTGTGAGCGA 6670261 36 100.0 36 NNNNNNNNNN .................................... ATCTTCCTCACTCGACAAAACAGCCTTGACACGCCG 6670333 36 100.0 36 NNNNNNNNNN .................................... GACTCGGTAGAGCAGCTCGAGCGGGCGATCCGTTCC 6670405 36 100.0 36 NNNNNNNNNN .................................... GCGGATCGACGCATCTTCGGTGGGGGCGTGGGGGAA 6670477 36 100.0 38 NNNNNNNNNN .................................... GCCAGTCGGCCGAAATAAACCGATGCTACCGGGTCGCC 6670551 36 100.0 35 NNNNNNNNNN .................................... GTCGCCTTGTTTGAGTGGGCCGAGCGGCGCGGGTA 6670622 36 100.0 36 NNNNNNNNNN .................................... CGCACAGAGGCGCGTGAGACGGCGCAAGCGCGGCGT 6670694 36 100.0 37 NNNNNNNNNN .................................... AAGGGTATTCTCGGTCATTGAGCTGCAGCCGACTGGC 6670767 36 100.0 36 NNNNNNNNNN .................................... CTTGAAGTCGTGATCGCCAGCGCCCGGGCCATGCGC 6670839 36 100.0 39 NNNNNNNNNN .................................... GGGTCCACGTGGCCGCGGTCCAGCTCGCGGACGACCCAG 6670914 36 100.0 36 NNNNNNNNNN .................................... CAGCACATGGCCCGCATCGTCGCGGTGTATGCGACG 6670986 36 100.0 37 NNNNNNNNNN .................................... GACTACCTGGTAGCCGGCTGCCGTGGACGACGAGCGA 6671059 36 100.0 37 NNNNNNNNNN .................................... ATCCGCACCCCGTCGCCGGGGTGCGCAGCGTAGACGT 6671132 36 100.0 36 NNNNNNNNNN .................................... ACCGACAGCACGCCGGTCATGGCCCAGGCCGGAGCG 6671204 36 100.0 36 NNNNNNNNNN .................................... GAAATGAGCGGACATAATGTAATTGATGGTCCGCCT 6671276 36 100.0 36 NNNNNNNNNN .................................... AGCCTTGGAACGCGCGTCTAGTATCCGTAGTTGGGC 6671348 36 100.0 36 NNNNNNNNNN .................................... ATTCTAACCCGTCTATTCCCTAGCGACCCATTATCC 6671420 36 100.0 36 NNNNNNNNNN .................................... GCTGCTATCCGGGCGACTAAGGATGTTGCTGTAAGG 6671492 36 100.0 35 NNNNNNNNNN .................................... GATCCTTGTACGCAAGCCCTTGTCTGGCCGTCTGG 6671563 36 100.0 34 NNNNNNNNNN .................................... ATGGCGATCACTCCTGGGCTGCGAGCCCGATCTT 6671633 36 100.0 36 NNNNNNNNNN .................................... ATCGTCTGGCATCGAGGCACCGGGTGGACGGGGCAC 6671705 36 100.0 35 NNNNNNNNNN .................................... GCGGAGACCACCGAGAGCCGATCGCTGTCACGTAG 6671776 36 100.0 40 NNNNNNNNNN .................................... CCGGACACCTGCTCAAGAAAGCCCGTGAATCGCACAGCGG 6671852 36 100.0 37 NNNNNNNNNN .................................... CTGGCGCGGACACTCAGCCGCTTTCCCGAGTCGTCGC 6671925 36 100.0 39 NNNNNNNNNN .................................... TAGGGCAGAAGAGCCGACGGAATGCCGTTGCCGTTCGTC 6672000 36 100.0 37 NNNNNNNNNN .................................... GTGTACCGCGTCGCCTTGTTGAGACGACCGCGCACGT 6672073 36 100.0 36 NNNNNNNNNN .................................... TGCAAGGCTCTGCAGAATGATCCCAAGCATAGGCGT 6672145 36 100.0 37 NNNNNNNNNN .................................... CACCACTCGCCAGGGGCGCCGTAGCGGAGCACGACCA 6672218 36 100.0 38 NNNNNNNNNN .................................... GATTACATGGCGCAGCGCGTAGGCGTGTCCGCCGAAGG 6672292 36 100.0 37 NNNNNNNNNN .................................... TCCATCGGTTGAAGTGGTACAGAGCATATTAACGGAG 6672365 36 100.0 35 NNNNNNNNNN .................................... CGGGGGCGCTAGAGCCTTTGCGAGCGCCCGGGGAG 6672436 36 100.0 36 NNNNNNNNNN .................................... ACCTCAACCGCCTCGAAACCACGACGGTAGAGCGCG 6672508 36 100.0 36 NNNNNNNNNN .................................... GTGGTGAGCGCGTCGCTCTCGGCTTCTCGGACCCGC 6672580 36 100.0 35 NNNNNNNNNN .................................... CCGACGGTCCCGGACGCCACCGCGTGGACTGTGAC 6672651 36 100.0 37 NNNNNNNNNN .................................... GAGGGTCTGCCCCTGATCCGTCCGGACCTCGTCGACC 6672724 36 100.0 35 NNNNNNNNNN .................................... GGTGCACCGCCCGGAGTGGCGACGACGCCGGCCAG 6672795 36 100.0 35 NNNNNNNNNN .................................... GAAGTGGACCCGCGCGGCCGCTCCACGTCTGGGAC 6672866 36 100.0 39 NNNNNNNNNN .................................... TCCTCGATGCGGGCGCTGAGCTGTTGCCCGGCGTGGGCA 6672941 36 100.0 37 NNNNNNNNNN .................................... TGACCTACGAGCACACCGTTACCGGCGCGGGTGATAC 6673014 36 100.0 37 NNNNNNNNNN .................................... GACGCCGCTGCTCAAGGGCTCGAGCAAGATCGCGAAG 6673087 36 100.0 40 NNNNNNNNNN .................................... CCAAACACGCGAGCGACGGCGCCCGCTTACACCGTTCGAT 6673163 36 100.0 35 NNNNNNNNNN .................................... GGTTCCTTGGGACGACGATTGCTATTCTCTGCCGG 6673234 36 100.0 36 NNNNNNNNNN .................................... GATATCTAATCTTGGGTGGTAATTAGATATCTAATC 6673306 36 100.0 35 NNNNNNNNNN .................................... GTAGACGCGATCCTAGAGCGGCTGGTCGGCATGAC 6673377 36 100.0 37 NNNNNNNNNN .................................... AGCCTAGATGTCGTTACGCCGTTGGTGCGCAGCGGCG 6673450 36 100.0 35 NNNNNNNNNN .................................... CGTGAATCCGGGCGGGATGTTGATATTCAGGTTCT 6673521 36 100.0 37 NNNNNNNNNN .................................... CAGGGCAAGATCCTCACCATGCTCAAATGCGCCGCTT 6673594 36 100.0 35 NNNNNNNNNN .................................... CCCAGTTCGGCGCCCTTTCCGGCCGGGTCGGGCAG 6673665 36 100.0 36 NNNNNNNNNN .................................... AGCGCTGTCAATCAAGTATCCGGCGATGCGGGTCAT 6673737 36 100.0 37 NNNNNNNNNN .................................... TCGCCGGCCGAACTCACCGTCATAGAGGCAGCAGGAC 6673810 36 100.0 37 NNNNNNNNNN .................................... AGGGTAGTGCAGTTGCTCGGGGCCGTGTCTCGAGGTC 6673883 36 100.0 36 NNNNNNNNNN .................................... GTCTGTACGTTCGCGCTCGTTGGCTCGCCGTGTCAG 6673955 36 100.0 35 NNNNNNNNNN .................................... GGCGTCTCCCCGGGCTGCAGTTCTTCAATCACCAG 6674026 36 100.0 37 NNNNNNNNNN .................................... GCCTCCGCGAGGCAGCGAGTACTCGGCGTCCTCCGCG 6674099 36 100.0 37 NNNNNNNNNN .................................... CGGCACCAGCCCACCGCGACCAGCCGCCAATCGGTGG 6674172 36 100.0 36 NNNNNNNNNN .................................... GCACGACAGCGCAACGCGTCGAGTAGTCACCGTAGA 6674244 36 100.0 36 NNNNNNNNNN .................................... GATGATCTGAGGCAGGTTGTCGCGCCACCACTGCAG 6674316 36 100.0 35 NNNNNNNNNN .................................... GAAGCCTTCGTCCAGAACGACAAGATCCCGTTTAC 6674387 36 100.0 35 NNNNNNNNNN .................................... CTCTCCGTCCGGACGTACCCAGTTCGACCGAACTT 6674458 36 100.0 36 NNNNNNNNNN .................................... GCCGACTCCGGCGAAGGTAGCCGGGCGACCGTCCGT 6674530 36 100.0 35 NNNNNNNNNN .................................... CTACGGCTCGCACCGACACGCGTTTCTTTCAACTC 6674601 36 100.0 37 NNNNNNNNNN .................................... GATATCAAAGGTTCCTGAGACAGATACAGCCATGACT 6674674 36 100.0 36 NNNNNNNNNN .................................... TAGCCAAGCCTTGGCCAGCCAAGACCTATACAGGGC 6674746 36 100.0 37 NNNNNNNNNN .................................... GCGGCGTTCGTCGCTGCCTATGGCGATTGCGACGACT 6674819 36 100.0 39 NNNNNNNNNN .................................... GGCGGCCTGTTCGCGCCGATCTCTGTCGGCGGCGGAAAG 6674894 36 100.0 37 NNNNNNNNNN .................................... GGCGCCGAGTCTCCTCAGCTGCGGGCGAGGAGAGCAG 6674967 36 100.0 39 NNNNNNNNNN .................................... GTCTCAAGGCCGGAGTTGGTTATCGAAAAAATTCGGTAA 6675042 36 100.0 36 NNNNNNNNNN .................................... GGTACGGCGCCCAGCCGGGCCGCCGACAGGGCGCCG 6675114 36 100.0 36 NNNNNNNNNN .................................... TCCCGCAGTCCAGTAGCGGCGGTATTACGTTCGGCC 6675186 36 100.0 35 NNNNNNNNNN .................................... AGGACTGCTCTGTCTTTTTCGTACACTCCATGCCT 6675257 36 100.0 36 NNNNNNNNNN .................................... GGGCTGATCGAGGTCGTCTGCGACGAGTACGGCGTA 6675329 36 100.0 37 NNNNNNNNNN .................................... GGCGTAGTCCCATGACGCACGGACGTGCGCCCGCAAG 6675402 36 100.0 38 NNNNNNNNNN .................................... CGCAGCCAAATCCTGCCGTCTCGGGTGTCCGAAATCAC 6675476 36 100.0 37 NNNNNNNNNN .................................... CGCGACGATGTCGCTCAGCTCATAGTGGACCGTATCC 6675549 36 100.0 37 NNNNNNNNNN .................................... AGCTCGGAGCAGCGAATTGCGCTCAAAGCATTCATCG 6675622 36 100.0 36 NNNNNNNNNN .................................... CTTAAAAGCAGTGGAGATCTCCTCAACCTCTGCCTC 6675694 36 100.0 35 NNNNNNNNNN .................................... AAGCTCCTCAACCATGATGTCGTCAGCATGGCTGA 6675765 36 100.0 38 NNNNNNNNNN .................................... GCTCGACCAGCGAGTGAAGGTCGCGATATGACGCGCGA 6675839 36 100.0 39 NNNNNNNNNN .................................... CAGAACCCGCTCTGCGCGCTCGGACTGGAGGTGGTGAGT 6675914 36 100.0 35 NNNNNNNNNN .................................... ATCGGACATCTGGCCAGGTTTGGTTCTGCTCGGAC 6675985 36 100.0 36 NNNNNNNNNN .................................... ACGAAATCGACCATCGTGTCGGTGATGTTTCCGGCC 6676057 36 100.0 37 NNNNNNNNNN .................................... TCGGTTTCGACGCCCATGGTATTGGCCGCGTACGCCA 6676130 36 100.0 36 NNNNNNNNNN .................................... AAGGCTGTACCGCAGCTCTTGCGTGCTCTCGACAAG 6676202 36 100.0 37 NNNNNNNNNN .................................... TCAAGATAAGCTCATACAGGGGCTGGGCGCTGGTGTT 6676275 36 100.0 36 NNNNNNNNNN .................................... GCCATCTGGAGCTACGACGGCTGGTATAAGGACCCC 6676347 36 100.0 44 NNNNNNNNNN .................................... CTCGCTCACAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAG 6676427 36 100.0 37 NNNNNNNNNN .................................... AGAAGGTTGCGGGCAAGCTCTACTCCGCATTGGTTCA 6676500 36 100.0 39 NNNNNNNNNN .................................... CTCAATACATGCATGCAGATGCATGTCGGTGCATCACCG 6676575 36 100.0 42 NNNNNNNNNN .................................... CGATCGCGCACGCGTTGATACGGCGGCGCTTGTGCGTTGGGC 6676653 36 100.0 40 NNNNNNNNNN .................................... GCGCCGGTGAGGTCGGCGCCGGTGAGGACGGCGTGGGTGA 6676729 36 100.0 34 NNNNNNNNNN .................................... TTGGTCGTACCGATGATCACGCACTGCCTGCGGC 6676799 36 100.0 35 NNNNNNNNNN .................................... GATATCTCTTCAAGATCTTGATTTTAGCCATAGGC 6676870 36 100.0 35 NNNNNNNNNN .................................... CCGATATGCGGTTGTCGTTTCGCCGTCGGCAGCCG 6676941 36 100.0 36 NNNNNNNNNN .................................... GAGATGCCCACCACCACAATCCGCGCCCTTATCTCC 6677013 36 100.0 36 NNNNNNNNNN .................................... TAGTCGATCGGATTCATCGGCGGCACCTCGACGCGA 6677085 36 100.0 36 NNNNNNNNNN .................................... CAACTGCAAACTCACAGGTTCGGCTTGGCCTGTGGG 6677157 36 100.0 37 NNNNNNNNNN .................................... GGCCAGCCGTACGCATCGGCCAGCTCGTCGTAGTTGT 6677230 36 100.0 37 NNNNNNNNNN .................................... GGATCGAGCCGACTGCGGGCGCTCCACGCACGTGCGA 6677303 36 100.0 36 NNNNNNNNNN .................................... GCCAAGATCTCCGCGAGCTCCGGGTCGAGCGCCTTG 6677375 36 100.0 36 NNNNNNNNNN .................................... TTGTAGCGCGATCGACATAGCCTCTACGGTTACCAC 6677447 36 100.0 35 NNNNNNNNNN .................................... CTGGTGTTGTGGACCTGGCTACGGCTGCAGGCGTC 6677518 36 100.0 35 NNNNNNNNNN .................................... GCGGCGATGAAAGTGCGCGATCTCAGCGTCTGCCA 6677589 36 100.0 40 NNNNNNNNNN .................................... CGAGCATATGCGCGCGGCCTTCGAGCGAGGCCTTGGTGTT 6677665 36 100.0 36 NNNNNNNNNN .................................... AATGTCATCTGACGCTCAACCTCGAGCGTTCGCGCG 6677737 36 100.0 35 NNNNNNNNNN .................................... TTTCTGCCGCCCTGGACTATCTCCAGGAGCGAGCG 6677808 36 100.0 36 NNNNNNNNNN .................................... ACCAAGGGGCACGTGCGCAGCGGCCTGATCAGCCAG 6677880 36 100.0 37 NNNNNNNNNN .................................... GCGCCTGGCCACGTACCTGGGCACCGAAGTGCGGCGC 6677953 36 100.0 36 NNNNNNNNNN .................................... GATCTGGAAGTCGGCGTCGGGGTGCTTCGTGCGCAG 6678025 36 100.0 36 NNNNNNNNNN .................................... GTCGCACGTCTTGCACGTGCGGCGCTTCACCGGCGC 6678097 36 100.0 36 NNNNNNNNNN .................................... GTCTGCGCCCCAGGCTGGGCTAGGCGGCCCGCCGCC 6678169 36 100.0 37 NNNNNNNNNN .................................... GCGACATCCTGGTGCCAAGCACGTTTTGCCGCGCTGT 6678242 36 100.0 37 NNNNNNNNNN .................................... CGGCGCGCGGTATTCGAGTTCGCTGGCGTCGACGGAG 6678315 36 100.0 37 NNNNNNNNNN .................................... CCGGTCGGGACATACGATGTCGCGGGTACGGCAACTC 6678388 36 100.0 36 NNNNNNNNNN .................................... GTCCTGCAGACTTCCGGCCCGACTAACCTAAACCCG 6678460 36 100.0 35 NNNNNNNNNN .................................... GGCTGCTACGCGACGCGGCTCGTGCTGATCTGGAG 6678531 36 100.0 36 NNNNNNNNNN .................................... TCAGCACCGCTCGGTCGGTGCCACTCATAGCCAACA 6678603 36 100.0 35 NNNNNNNNNN .................................... GCAGTCGAATACGAGGTGCGCGGCGAGCGCGTCAA 6678674 36 100.0 36 NNNNNNNNNN .................................... CGACCGACTGTTCTAGCACCCGAAGCGTCTTCGGGC 6678746 36 100.0 36 NNNNNNNNNN .................................... GTCAAGCGGGATCCGCTTGCCGTCGCGCTCAATCAT 6678818 36 100.0 38 NNNNNNNNNN .................................... ACACCAGCGCCGCGGATGCGGCGTCAAGTACGTAGCCG 6678892 36 100.0 36 NNNNNNNNNN .................................... GATCGGCGAGCCTTCGAACGCGATCCTGTCCAGGCC 6678964 36 100.0 36 NNNNNNNNNN .................................... CGCGATAGAATACGGCGCCTGGCGCTGCTACGACGA 6679036 36 100.0 37 NNNNNNNNNN .................................... CGGGCGAGCCAGTGCGGGTCGCCGAACAGCTCGCCGG 6679109 36 100.0 36 NNNNNNNNNN .................................... ACCTCTTGCGCCGTCGGCGTCGATACACTAGATTGG 6679181 36 100.0 37 NNNNNNNNNN .................................... GACGCGTCCGCCTCCGCCAACCTTGCCAGCTTGCCGC 6679254 36 100.0 34 NNNNNNNNNN .................................... CGCCCTCCATGTTGGACACGCGGCCCAACACGAT 6679324 36 100.0 37 NNNNNNNNNN .................................... TGGCCCGAAATATCGGCGTTCTTCGTGGGTATCGGGC 6679397 36 100.0 40 NNNNNNNNNN .................................... AGCAGCGTCGCCCGCGTGAGCGCCCAAAACGCCGCGACGC 6679473 36 100.0 37 NNNNNNNNNN .................................... CGCGCCAGCCACGCTCGCGCCACTGGGTGATCGAGAT 6679546 36 100.0 36 NNNNNNNNNN .................................... GCAAGTTCGTCGCAGTCGTCGCCGACAAAATAACAG 6679618 36 100.0 36 NNNNNNNNNN .................................... TCGGCCGTGGCCGCACGCTTGACGACGAGCTTCTTC 6679690 36 100.0 36 NNNNNNNNNN .................................... CCTCCGGAACTCCGGAGGAGGATGTCGCGGACGTCC 6679762 36 100.0 37 NNNNNNNNNN .................................... GGGGACACTGCGTCGGGCGTGATTGCCCGCTCGGCGC 6679835 36 100.0 36 NNNNNNNNNN .................................... GTCCGATATCGCGTCGAGGTGCCGCCGATGAAGCCC 6679907 36 100.0 36 NNNNNNNNNN .................................... TTGCGTGATGCGTCGCTCATGCGCCTCTCACCTCAC 6679979 36 100.0 35 NNNNNNNNNN .................................... ACGAGTTTGGACAGGTCGACGGCTGGCTTCACGTA 6680050 36 100.0 37 NNNNNNNNNN .................................... TTAAGCGAACTGCCGAAAGCGCTGACCAGTGTTCCGC 6680123 36 100.0 39 NNNNNNNNNN .................................... TGCCGCCGAACCTGATCAATCAACTCCGAGTTCACGCGG 6680198 36 100.0 36 NNNNNNNNNN .................................... TGCACGTCCACTCCGCACGTCAAAAACATCACCCCT 6680270 36 100.0 36 NNNNNNNNNN .................................... ATGGCGTGGCGCGCCCGCAGGAGGCGGCGTAATCCA 6680342 36 100.0 36 NNNNNNNNNN .................................... CGCGGAAGTTTGTGATCAACCCCGGAGACACAGCCT 6680414 36 100.0 36 NNNNNNNNNN .................................... ACCGTCTTTGCCCACCTTGGTAACGCGCACGCCGAA 6680486 36 100.0 36 NNNNNNNNNN .................................... CAGCTCATCGACAAGTACCGGAGATGGAAGATTGTT 6680558 36 100.0 35 NNNNNNNNNN .................................... GGGCCGGCTCAGATCGCGGGTCAGATCGCGGGTCA 6680629 36 100.0 35 NNNNNNNNNN .................................... GGGATTCCGCGGTGGCATCGCTTCAGCGAGGCGTG 6680700 36 100.0 36 NNNNNNNNNN .................................... TACACGCGCCCTCTGGCGCCATGGTGAGCCACAGCG 6680772 36 100.0 36 NNNNNNNNNN .................................... GCGCTGCTCGACGACCTGCTCGACACAGTCCAGATG 6680844 36 100.0 36 NNNNNNNNNN .................................... GCTATGTAGCGACGCTAGTCCAAATCCCTCTCCAGG 6680916 36 100.0 38 NNNNNNNNNN .................................... GTCGAGGCGTCGCCCGAGTACGCCGAGATCGCCAGGGC 6680990 36 100.0 38 NNNNNNNNNN .................................... ACCTTGCTCAAGAACGACTGGTGGTGCAAGGGCCTGAG 6681064 36 100.0 37 NNNNNNNNNN .................................... GTCGCCGGCATGCGTGCGCGCATCCGGCCGAACGGAG 6681137 36 100.0 37 NNNNNNNNNN .................................... TCCGCGCGCACTTCGTCCATGGTCACGGGGCCCAGGC 6681210 36 100.0 36 NNNNNNNNNN .................................... CTTGGTGGGTCGGATCTGCAGACACGTGCGCCGGCC 6681282 36 100.0 36 NNNNNNNNNN .................................... AATGCTGCCACCGATGGCTGCCATGTCCTGCTCCTT 6681354 36 100.0 39 NNNNNNNNNN .................................... CGCCCGCGGCGCAGGTCGGGCCACCTACGAGAATGGCCT 6681429 36 100.0 38 NNNNNNNNNN .................................... AATGTCTTGCTCAGCGGCCCGAGAGTCGGACTCTCGAG 6681503 36 100.0 35 NNNNNNNNNN .................................... TGCGGCTCGGGCTCGACCGGGGTGGCCGCTGTGCG 6681574 36 100.0 36 NNNNNNNNNN .................................... TTCGACCACCTGCGCGCGGCGACCACCTCGATCTGC 6681646 36 100.0 35 NNNNNNNNNN .................................... CCCTGGACCACGCGGGCATAGAGGTACTCGACGTC 6681717 36 100.0 37 NNNNNNNNNN .................................... AGCGTCCACCCTTAGCGCACCTCGCGCCCGCAACGCC 6681790 36 100.0 37 NNNNNNNNNN .................................... CGCGTTGAACCCCGCCATCGCCAGAAAGTCTAGGCCC 6681863 36 100.0 37 NNNNNNNNNN .................................... ACGTGGACACGCGTACGCCTCCGCCGCCGGACGGTTC 6681936 36 100.0 36 NNNNNNNNNN .................................... GCTACCTGCAACGTCGTAGCAACCCCCGTTTTCAAC 6682008 36 100.0 35 NNNNNNNNNN .................................... GGGTTCTTCTACGGCGCCGTCGCCGCGTAAGGAGC 6682079 36 100.0 37 NNNNNNNNNN .................................... GTATTGCGCGGCTGCGTGACCTCCTCGGCATCCTCGG 6682152 36 100.0 38 NNNNNNNNNN .................................... GCGAACGAGACCTCGACCGAGGCCGACCCGAGCTGCAG 6682226 36 100.0 38 NNNNNNNNNN .................................... GAGTCGCGCGACGGGGCCCGTCGTCGACGCGAGGCCGC 6682300 36 100.0 39 NNNNNNNNNN .................................... GACTACCTGCTGCCCTACCACCGCGTCGACGCCGTGCTG 6682375 36 100.0 37 NNNNNNNNNN .................................... CGGCTGCGCAGGCGCGGCTATTCTCTGCGCCAGGGTT 6682448 36 100.0 38 NNNNNNNNNN .................................... TGAACTCGGGCCCCACCGCGGATCCGCACCTCGAGGTC 6682522 36 100.0 38 NNNNNNNNNN .................................... CGCGTGTCCCAGCGCTTGCTGAGGTAGGCGACCAGCTC 6682596 36 100.0 35 NNNNNNNNNN .................................... GTCCCTACCGGACGGCGGCCGAGATCGTGGACTGG 6682667 36 100.0 36 NNNNNNNNNN .................................... CTCGGCTGCGAGCTCGAGCATCACGGTCGAGTCCTT 6682739 36 100.0 35 NNNNNNNNNN .................................... CTGCGAGCCGTGGATCCGCGAGACTGCACCGCGGC 6682810 36 100.0 38 NNNNNNNNNN .................................... GAAGTTTACGGATTTGTCACAGGGCCACCGTCGCGCGT 6682884 36 100.0 39 NNNNNNNNNN .................................... GTCGTGTTCATGCATCTACTATGGACATATTCCGTTGTA 6682959 36 100.0 37 NNNNNNNNNN .................................... GTCTCGCTCCGCGCCCCATCCAGGAGAGTACCAGCGA 6683032 36 100.0 36 NNNNNNNNNN .................................... GTCGGTTCCTTTCGCAAGGCGTGATATCCAACTCAC 6683104 36 100.0 36 NNNNNNNNNN .................................... AGCGCATACAACGGACACGAGTTCTTTGTGTCGCTT 6683176 36 100.0 36 NNNNNNNNNN .................................... TCTCGCACCACTACGCGGGGACCTATCCGGGCGCGG 6683248 36 100.0 36 NNNNNNNNNN .................................... GTAGTCGGGAGGGCTCTTCATTGCGGTCCCTCTGTG 6683320 36 100.0 35 NNNNNNNNNN .................................... TTACCGCACCCGAACACGCTGAGTTGTGTAGGTTG 6683391 36 100.0 34 NNNNNNNNNN .................................... CTCACTGAGTGCGTGCGCCTTGGTTTTGGCCGAA 6683461 36 100.0 36 NNNNNNNNNN .................................... GCTACCTCGCTCCGCGGCCGGAGGCCACGCGCCGAG 6683533 36 100.0 38 NNNNNNNNNN .................................... CTTTTCTTTGTGTCTCTCGATCGAGACAAGATCAGTCT 6683607 36 100.0 37 NNNNNNNNNN .................................... ATCGCCCGCCCCCTCGAATCGCGGAAAGTGATGAGCT 6683680 36 100.0 37 NNNNNNNNNN .................................G.. TATCACTATTTATTTAATAATCTCCAAACCACTATTT 6683753 36 100.0 35 NNNNNNNNNN ...................................A TTGTGGCTCCTGAAGCTTCGTATGATAAGACACAT 6683824 36 100.0 37 NNNNNNNNNN .................................... ATCGGCCTCAATTACAGCCCCCGCGCTAATAGAGTTC 6683897 36 100.0 35 NNNNNNNNNN .................................... AATAAGATTGTTATGGAGAATTTGGATGGTGACCC 6683968 36 100.0 36 NNNNNNNNNN .................................... CTCACCAATGTCCGGATTAATTATCATGACGTCGCG 6684040 36 100.0 42 NNNNNNNNNN .................................... AGGTGACTGGAAGCTGGAAGGGAGATACTCGAACTTGCTGGC 6684118 36 100.0 34 NNNNNNNNNN .................................... GCCGCGCGCTCGTAAAGCTCGAATGCGGCATGGG 6684188 36 100.0 36 NNNNNNNNNN .................................... TTCAGCAAATCGAGTATTGGCTACAGCAGACGCTAA 6684260 36 100.0 37 NNNNNNNNNN .................................... TGGCCGAGGTTCGAGAGCAGCGCAGAGCGCTACGCCG 6684333 36 100.0 38 NNNNNNNNNN .................................... ACAGAACATCATCGAACTTCGACATGCCCATAAAGGCA 6684407 36 100.0 37 NNNNNNNNNN .................................... TAGGGGCCCGGCCTTCGAATTGTCCGACACGTCGATC 6684480 36 100.0 39 NNNNNNNNNN .................................... CGGTGTCTGCGGGGCTGGGTGCGGCGGCGCTCAAGGGGT 6684555 36 100.0 36 NNNNNNNNNN .................................... ACGCCCAGAGGTACGCGCCATCTCTACGGCTGCTCC 6684627 36 100.0 36 NNNNNNNNNN .................................... CGTGAAAACTTCGCTCATGCTGCGTCCCGTAGGCGG 6684699 36 100.0 34 NNNNNNNNNN .................................... TCGATCTCGTACTCCTCCGAGGCCGAGGCCGAGA 6684769 36 100.0 37 NNNNNNNNNN .................................... CTCGCGAGTGCTCGCAAGGCGCTCGGCGTGATGCTGG 6684842 36 100.0 38 NNNNNNNNNN .................................... AGGTTCTCCGCAAACCCCCGTGGCTTGCGGGTGAGCGG 6684916 36 100.0 42 NNNNNNNNNN .................................... GCGCAATAAGCCCGTGTTCGTGAGCGATCGGAGCCATAAGGA 6684994 36 100.0 36 NNNNNNNNNN .................................... AATTAAATGCTCTTTCTTCGGCTCCGCGATCTTAGC 6685066 36 100.0 36 NNNNNNNNNN .................................... AACGCGGAACAGGCCATTGCCGCCCTGCCGGGGGTA 6685138 36 100.0 39 NNNNNNNNNN .................................... CGCCGATGCTGCCGCGCGCGCCATCACAGCGACCGCGTT 6685213 36 100.0 37 NNNNNNNNNN .................................... GCGTCGGTCGTCATGACTCGCCATGGCCGCGCTGTGA 6685286 36 100.0 1 NNNNNNNNNN .........TGTT...G.G.AC.AGAAAGCGCGGAA NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 589 36 36 GTTTCCACGACCCAACAGTCGTGGCCTCATTGAAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [8,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.90,-9.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-23] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [38.3-38.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [259,14] Score: 0.18/0.18 # # Final direction: F [0.59,0.37 Confidence: LOW] >NC_013440 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 6688654 36 100.0 41 AGAAAAACCG .................................... TGGACGGTCGGACTTGGGACCAGTTTCCCGCGATGGAGGTG 6688731 36 100.0 35 GATGGAGGTG .................................... GAGGTCGCCCGTGAGCGAGGGGCGGGCGGTGTTCT 6688802 36 100.0 37 GCGGTGTTCT .................................... AGCTCGGCCAGCATGATCCCTGGCCTGGTGATCGAGT 6688875 36 100.0 36 GTGATCGAGT .................................... AGGATCAAAGCATTCTGCGACTTGATTCTCGAGGAA 6688947 36 100.0 38 TCTCGAGGAA .................................... CGGATCTGCTTGTAGCTGGCGCCGCCGACGGCGCCAGT 6689021 36 100.0 37 CGGCGCCAGT .................................... CGTTCCGGCCTCGATCACCAGCATCTGCGCCCCTGTG 6689094 36 100.0 36 CGCCCCTGTG .................................... GTGCCGACGGGGGCAGGGTGAGCTGGCGAACGAGGC 6689166 36 100.0 35 CGAACGAGGC .................................... CAGCCCGCTGGTTGCGACGGCGACCGCCTGCTGGT 6689237 36 100.0 37 GCCTGCTGGT .................................... GCAGCGTGCAGCCCTACATGCGCACGCAGGAGGATGG 6689310 36 100.0 39 AGGAGGATGG .................................... ATGATGCAGTCCGATTTCCGTGGGCGGCCCCAGTGCCGC 6689385 36 100.0 35 CCAGTGCCGC .................................... ATCGCGGGCGGGGAGAGTGGGCCGGGCGCCAGGCC 6689456 36 100.0 38 GCGCCAGGCC .................................... CACCCTCGAGGCCGACACCCTCGAGGCGGCTATCGCCC 6689530 36 100.0 37 GCTATCGCCC .................................... GAGGCGGAGGTGCAGGCAAACGGCAACGGCACCGCCC 6689603 36 100.0 36 GGCACCGCCC .................................... CTGCCATTGGCTGTACAGCGCCACGAACCATACCCA 6689675 36 100.0 37 ACCATACCCA .................................... GGGCCGGCTCAGATCGCGGGTCATAGGGTCTCCTCTT 6689748 36 100.0 36 GTCTCCTCTT .................................... CCCACCCTGTAGCTCGTCGGACTCTAGTCCGTTGTA 6689820 36 100.0 37 GTCCGTTGTA .................................... GACCTCTCTACTGTTCCACTATGCTATGAACGCTAAT 6689893 36 100.0 35 GAACGCTAAT .................................... CGCGGGCGGAGTGCAGGACGAACAGACCTCCTGGC 6689964 36 100.0 37 ACCTCCTGGC .................................... TACTGTATACGATGTCGGCGTAAGGTACACTCTCCAG 6690037 36 100.0 37 CACTCTCCAG .................................... GGAGGCCAAGCTTCTTTGGGACATCTGGGCCCACTGT 6690110 36 100.0 36 GGCCCACTGT .................................... CTGCTCCACGAACACGGAGGCCACGACCGCGACGCA 6690182 36 100.0 36 CCGCGACGCA .................................... TGCGTGCGCAGCACGTGGGCCACCTGGTCGGGGGTG 6690254 36 100.0 36 GTCGGGGGTG .................................... ACGACGAGCTTCTTCTCGAGCAAGCAGGCAAAATGC 6690326 36 100.0 37 GGCAAAATGC .................................... GCCGCGGGTGCGGTCGCTGTGATGGCGCGCGCGGCAG 6690399 36 100.0 36 CGCGCGGCAG .................................... GTGCCGGGCCAGGCGACATGGTTCGTCGACCCGCCG 6690471 36 100.0 34 CGACCCGCCG .................................... GCCATTGCTGCGCCTGCGACGACGCCGCCTGCGA 6690541 36 100.0 38 CCGCCTGCGA .................................... GCCGCAGCAGCCTGCTGGTCGCGCTGAAATTCTTCCCG 6690615 36 100.0 38 ATTCTTCCCG .................................... CGACCTCGGGACCGCGGACGAGGGCAACAAGCAGCAGG 6690689 36 100.0 36 AAGCAGCAGG .................................... GGGCGGTACTTGACGCTCGGACGCTGCCGCTCGCAC 6690761 36 100.0 36 CCGCTCGCAC .................................... CGCAATGTGGTGAGCCTGAGGCGCAGTGCAACACCA 6690833 36 100.0 36 TGCAACACCA .................................... GGACGGCGAGGTCACGGGGATTACGTGGGAGACCGA 6690905 36 100.0 35 GGGAGACCGA .................................... GGTGACGGGGACCTCGGACACCACGTCCCCAAGGT 6690976 36 100.0 35 TCCCCAAGGT .................................... TTTGGCCTGTATGCGGTCGACGGTCGCGGCGTCGC 6691047 36 100.0 36 GCGGCGTCGC .................................... CCAGGGGCCTCCGTGCTCGACCCGATTCCACTGCCG 6691119 36 100.0 36 TCCACTGCCG .................................... CTGTTGCGGGACCGTGAAGGTTGGCGACGCGCGGAT 6691191 36 100.0 36 ACGCGCGGAT .................................... GTAACTCGTGGACGTGAGCGACGCAGAATCGCACCC 6691263 36 100.0 35 AATCGCACCC .................................... ACCGCGTCCAGAGCCAGATACGAGTACTCCAACAC 6691334 36 100.0 35 ACTCCAACAC .................................... AAGGGGCCCGTACCGGCTTGGTAACTCGTGGACGT 6691405 36 100.0 35 TCGTGGACGT .................................... GGACAGCCCACGGCCCTGGGCCCTGAAGCGTTATG 6691476 36 100.0 36 AAGCGTTATG .................................... AGGACCCGCACGTCCTGCGTGCTTGGCCGCGCGGCC 6691548 36 100.0 35 CCGCGCGGCC .................................... CAACGATGGCCGCTCTTTCCGTGGCTTCCATTTCG 6691619 36 100.0 35 TTCCATTTCG .................................... CAATAAGCATCTGCGAAAACAACTAATTACAGCGT 6691690 36 100.0 36 ATTACAGCGT .................................... AAGCAAGCTCTGCTCATCAGCATGCAGGCCGCGGCG 6691762 36 100.0 38 GGCCGCGGCG .................................... GAGAAACGAGTCCGGTAACACAGCGCGGTGCTCGTCGA 6691836 36 100.0 37 TGCTCGTCGA .................................... TCTGGACGATATCGTAACTCTCGCCCTCAGGAGAGAC 6691909 36 100.0 35 CAGGAGAGAC .................................... AGCGCGACGCTGCGCGGGCGGCCGCGCTGGCTTGG 6691980 36 100.0 36 GCTGGCTTGG .................................... GTCAGGGCCACGATCCGACACCCGGGCGCGAGAGCG 6692052 36 100.0 35 CGCGAGAGCG .................................... TGCTGGGTCATGGATAGCCCATCTTGCCCTGGTCT 6692123 36 100.0 37 GCCCTGGTCT .................................... CTTCGTGGTCGCCCTCGGGGTCGTGCCGCACTTCTTA 6692196 36 100.0 34 GCACTTCTTA .................................... ACCACGCCTCGGTTACGGCCGAGCAGGAACACGC 6692266 36 100.0 36 AGGAACACGC .................................... TTACCCGCGTTTCAAGGCTCTTTGACGTCGTCGTAT 6692338 36 100.0 35 GTCGTCGTAT .................................... ATAGCGCGGGCGGTCGCGTTGATCTTGTTCTCGGC 6692409 36 100.0 36 TGTTCTCGGC .................................... GCCTCGATCTCGAGCGGCAGGGTCGAGCAGATCCGG 6692481 36 100.0 36 GCAGATCCGG .................................... TACCGCGTAGTCATCAGGCGCTGTGAGCGCCGGCCC 6692553 36 100.0 35 GCGCCGGCCC .................................... GAGCTCGCGCCCGTGGACTGGGCCACCGTGGCGCA 6692624 36 100.0 36 CCGTGGCGCA .................................... GCTTCATTTAACAGCCAATTTTCGAGCGCCGGGTGC 6692696 36 100.0 36 CGCCGGGTGC .................................... CTCTGCGGTGATATGGAAGCGCCACCTGCATCCCGT 6692768 36 100.0 36 TGCATCCCGT .................................... ACAGCCATGCACCTGCATAAGCAGGTGTCCGGCGCT 6692840 36 100.0 37 GTCCGGCGCT .................................... CCTCGCCAAGCACTACGGAGGCAACGAGGGTCCGGGA 6692913 36 100.0 37 GGGTCCGGGA .................................... TGCGCCCAGTTGGGCGTGCCCGGGTCGCCGTACGCGA 6692986 36 100.0 34 CCGTACGCGA .................................... GCAAATTTTTTCTACGGCATCATCACGATTCCCA 6693056 36 100.0 37 ACGATTCCCA .................................... ATTTCAAAATACAACATACGTGGTTCATCTATTGCTG 6693129 36 100.0 35 TCTATTGCTG .................................... TGTAATCTTGCTCACAGAAAAGAGTGTGTGCACAT 6693200 36 100.0 36 GTGTGCACAT .................................... GGGGGCGAGCGAGACGGCGACAAGGCGGGGGGCGAC 6693272 36 100.0 35 GGGGGGCGAC .................................... GAACTTGACACCATTCACCAATTAGCGTATAGTAA 6693343 36 100.0 41 CGTATAGTAA .................................... GCGCCGTGCGCCACGGACCCGGCTCCGCGCTTGCGTTGCGC 6693420 36 100.0 35 TGCGTTGCGC .................................... ACCGGCACAGCAACCGAAGGCGGCACGCAGGTCTA 6693491 36 100.0 36 CGCAGGTCTA .................................... GGCCCAACTGGCCGCTGCAGATCTCGCAGCTTTGAT 6693563 36 100.0 38 CAGCTTTGAT .................................... CCACCATTCTCGCCGCGTGCATTGAAACGCCCACGCTT 6693637 36 100.0 35 GCCCACGCTT .................................... GAGGCCTTCTCAACGCGGAACCCGCGCTCGGTCCA 6693708 36 100.0 35 GCTCGGTCCA .................................... CGCTGGGACGCCGACGGCAGTGAGCACTTCGCCGG 6693779 36 100.0 36 ACTTCGCCGG .................................... GACACCTCCCGGACCCGCGGGTCCGGGATCGCGTGT 6693851 36 100.0 35 GATCGCGTGT .................................... AACAAGCTGAGTCACGATAGAATCTTTCAAGGGTC 6693922 36 100.0 36 TTCAAGGGTC .................................... GTTCCCGGAGCTATCACGATCTACGGGCGTGGGCCT 6693994 36 100.0 38 GCGTGGGCCT .................................... GCCGAGGACATGCAGCGTCTAGAGCGCGCGGGCTACGT 6694068 36 100.0 37 CGGGCTACGT .................................... GCGATATAGCCGAGCGTCACTTCCCGGGTCCTCGAAC 6694141 36 100.0 36 GTCCTCGAAC .................................... GCGATACGTCGAAACTCTGCTTGCAGTTCCGGACTG 6694213 36 100.0 37 TTCCGGACTG .................................... ATCGCTCTGCGATGCGATGCGATGCCCAGCGGCGTTG 6694286 36 100.0 34 AGCGGCGTTG .................................... AGCAGGTGCTGCGCACGAAGCACCCCAACGCCGA 6694356 36 100.0 35 CCAACGCCGA .................................... CGAGGCGTATAGCGCCCACCTCGCCCGCTCTGTGG 6694427 36 100.0 37 CGCTCTGTGG .................................... CTCGACGAGCTGAGCGCGGCTCCGGGGGCTGTTCAGG 6694500 36 100.0 39 GCTGTTCAGG .................................... CTCACCTCGTGAGCGAGAGCAACCCGGCCGCCGGGATGC 6694575 36 100.0 36 GCCGGGATGC .................................... GGAGAAGGTTCAGATACAGAGCTGCTTAACGTCGAT 6694647 36 100.0 36 TAACGTCGAT .................................... ACTTTTATCCGTCAGACCCAACGAAGGATGAGGGCT 6694719 36 100.0 37 GATGAGGGCT .................................... GCGCCTGGCCCCTCGTACCCGGCGAGGGTGTGACGGG 6694792 36 100.0 39 GTGTGACGGG .................................... CGAGCATACGACGCGCTAGCCCGCGCGTAATCGATTCGT 6694867 36 100.0 35 ATCGATTCGT .................................... CGCCCACCGAGCGCGCCGTCGCGGTGATCTGCGGC 6694938 36 100.0 37 GATCTGCGGC .................................... GCGCCACCGCCGCGCGGGCCGCCCTCGGGCGCAAGCT 6695011 36 100.0 36 GGCGCAAGCT .................................... GCGCAGTCGGTGATCAAACTGAAAGGGCTCGCCGAC 6695083 36 100.0 39 GCTCGCCGAC .................................... GGTGTGTGCCTCGCCGATTGTGACCTGCGCGGCGCCGAC 6695158 36 100.0 35 CGGCGCCGAC .................................... CCGTCCGCGCGCATTACGGCGGCCGAGGCCGCTAC 6695229 36 100.0 36 AGGCCGCTAC .................................... GTACAAGTCGTCGAAAACAGGTGACGGCGGACGGGT 6695301 36 100.0 39 GCGGACGGGT .................................... CCGTTGATCGCGGACGTCATCGCCGCCACGGCATCGGCG 6695376 36 100.0 36 GGCATCGGCG .................................... GTGAGAGGCAACGACCTGGCGACCAGCGATCCGGTT 6695448 36 100.0 36 CGATCCGGTT .................................... GCCGTGGGCGATAGTCGATGACGCGCATCGGCTTAT 6695520 36 100.0 36 ATCGGCTTAT .................................... CGGCGCAGGATGGCCGGTCACGTTGACGCGCACGCT 6695592 36 100.0 36 CGCGCACGCT .................................... GCGTCGGCCACTCCGACCTTGCCAGGCACCCAGCCC 6695664 36 100.0 39 CACCCAGCCC .................................... CCTCGGCTGGATCGAACTGGAGTGGACGTGAGCCTTGCG 6695739 36 100.0 36 GAGCCTTGCG .................................... GGGTCGACGGGTTGCTAGCGACTCTCGAGCGTTCGC 6695811 36 100.0 36 GAGCGTTCGC .................................... TTATTACGCAGAGGTCGAGGCGACAGGAGGTGGCAC 6695883 36 100.0 37 GAGGTGGCAC .................................... TGCAGGTACGCCTCGATCATCTTCTTGCGTGATGCGT 6695956 36 100.0 35 CGTGATGCGT .................................... CCACGAGCCGGGCAAATTTTCTGAATGGACGGTCG 6696027 36 100.0 36 TGGACGGTCG .................................... TAGACAGGCGGCGTGAACTCCTTGTTCGTGTACCTG 6696099 36 100.0 34 CGTGTACCTG .................................... GACCGGCCGCACGAAGTGCTCGCCGAGCTTGCCC 6696169 36 100.0 35 GAGCTTGCCC .................................... CTGGGTGCGGCGGCGGAATGGGTGGCCGATAAGTG 6696240 36 100.0 34 CCGATAAGTG .................................... GCCGCGCTGTTATCGTCCAGCAGGACGGCTTTGC 6696310 36 100.0 36 ACGGCTTTGC .................................... CCGAGTGTCGAGGTAGCCAACGACGACGAGGCGCCC 6696382 36 100.0 38 CGAGGCGCCC .................................... GCGACGCGCGCTCGGCAGATCCTCGACGACGTACTGGG 6696456 36 100.0 38 ACGTACTGGG .................................... GCCCAGCAGTTCGGGGCGCTCACGGTCGAGCGCAATAC 6696530 36 100.0 37 AGCGCAATAC .................................... CGCCGCAGAGAGACACGATATGACCACGACTACCTAC 6696603 36 100.0 36 GACTACCTAC .................................... TCCTCTTGCACACCGAGCGTCGATACGCTAGATTCG 6696675 36 100.0 36 GCTAGATTCG .................................... TCTCACGACTGACCTCCGGCGCCCCGGAGGATGTCG 6696747 36 100.0 36 GAGGATGTCG .................................... GTTGCCTCGTTGAGGCGTCCCCGCACGGTAATATCC 6696819 36 100.0 38 GGTAATATCC .................................... ACCCACGGGATCGTGCGGCGATAGACGAGCCCACCAAT 6696893 36 100.0 36 GCCCACCAAT .................................... GCTGGCGCGGGCCGAGGTCGGCAACTTCGCGCGCCT 6696965 36 100.0 37 TCGCGCGCCT .................................... CATCTCGTGGTGGGGCCCAAGCTGTCAGGCGTCGCCG 6697038 36 100.0 35 GGCGTCGCCG .................................... ACCTGCTCTTCGTAGGGCCGCTTCTCCCAGAGATG 6697109 36 100.0 37 CCCAGAGATG .................................... GAGTACAAGAAACCCAAGCGACGCCCGGGTCGGCCGT 6697182 36 100.0 35 GGTCGGCCGT .................................... GCAGCGCGGCTCACCAGCTGAGGACGCTTCGCGCG 6697253 36 100.0 37 GCTTCGCGCG .................................... ATTTACCTCTACCTCTCCTGCGGACGGCAAGCACGTC 6697326 36 100.0 38 CAAGCACGTC .................................... TCCGGTGGCCGGGCGCGCCTGAGCGGGGCGGGCCGCTC 6697400 36 100.0 37 CGGGCCGCTC .................................... CCGACCCATCCCGTACCTGGGGTAGGATCCTGCGCAT 6697473 36 100.0 37 TCCTGCGCAT .................................... GTCGCCTCCCGTCGGCGCTGCGCGTGCGCGCGAGCGG 6697546 36 100.0 40 GCGCGAGCGG .................................... CCCGCCCGCCGGCCGCCGCGCCACAGGGCAGACCAGCACC 6697622 36 100.0 36 GACCAGCACC .................................... GGCCGGGGTAACTGCCCTTCGCGCTGGAGAGGGTTC 6697694 36 100.0 36 GAGAGGGTTC .................................... GCGGACGACGCCCAGACCCAGGGCGGCCAGCTCATC 6697766 36 100.0 38 CCAGCTCATC .................................... TGCCGCGGCAGGGCTAGGAATAGATTGCGTGAGCCTGT 6697840 36 100.0 36 GTGAGCCTGT .................................... GACCTGGCGTCCGAACTGTACGGCGACGTGGTGGGT 6697912 36 97.2 37 CGTGGTGGGT A................................... GGGCCGGCTCAGATCGCGGGTCACGATAGGGTCTCCT 6697985 36 100.0 39 AGGGTCTCCT .................................... CGGGCAATGGGTCCGCCGGAACCCCGGACCCACACGGGT 6698060 36 100.0 36 CCACACGGGT .................................... GAAAAAAATCTCTACGCCAAGGGTCTCATTCGGCGC 6698132 36 100.0 35 CATTCGGCGC .................................... GCGAAACCTGAGGAGTAGCAGTCGTCGTCAGTGAC 6698203 36 100.0 37 CGTCAGTGAC .................................... CTCGCCTACTGGGAGCGCGCTGTTCCTCGGCCTGAGA 6698276 36 100.0 35 CGGCCTGAGA .................................... AGATCCTCATGGTCACCAAATACCGTGATGGCCAA 6698347 36 100.0 35 TGATGGCCAA .................................... CCGAGTTTCCAATGCTTTTCGTTCGATCCGGGAAC 6698418 36 100.0 36 ATCCGGGAAC .................................... TAACAGGCAGTGGAGGAGGCGGACTAGCGGGTGCGT 6698490 36 100.0 36 GCGGGTGCGT .................................... CTCCCACCCAAACCTGCTGGAGGTTCAGGCGCCGGG 6698562 36 100.0 36 AGGCGCCGGG .................................... CTGGTGTTTAAGGGCGCCGGGCTCGCCACCAACGTG 6698634 36 100.0 35 CACCAACGTG .................................... AGGTACAGATGGTTGATCCGATCGCGGATTTCGAA 6698705 36 100.0 35 GGATTTCGAA .................................... AAATGCGCTCGAGCTACACTCTCGAGCTTATCCAT 6698776 36 100.0 36 GCTTATCCAT .................................... GATCGGCGATAGTGCCGACGCAACTCGAGCGATACC 6698848 36 100.0 34 GAGCGATACC .................................... GATCAACCGAGCTATCTCCTTTCGCAGTGATGGT 6698918 36 100.0 35 CAGTGATGGT .................................... CCAGATCTACTACTGGATTAGAGACCAGAAGTTAC 6698989 36 100.0 35 CAGAAGTTAC .................................... AATACTGCCGCCAATGGCTGCCATTTCCTCTGCTC 6699060 36 100.0 35 TCCTCTGCTC .................................... TTCAGGACCTTGGCGAGATCGGCTTTCAGCTCAGT 6699131 36 100.0 36 TCAGCTCAGT .................................... GATCGCGAGCGCCGCGGCGAGGGCGGCGTCGGCTTC 6699203 36 100.0 37 CGTCGGCTTC .................................... TACGTGCCTGCGGGTTCGACGGGAACGATTTAAGCGA 6699276 36 100.0 38 ATTTAAGCGA .................................... GTACAGACGTCCGGAGAAGAGGGCGTAGCTCCTCGGTT 6699350 36 100.0 35 CTCCTCGGTT .................................... GACCTTGAATCCCAAGCTCGCCGCGCCGAGATAGT 6699421 36 100.0 35 CCGAGATAGT .................................... GCCGACGCCGTGTCCGAAATAATCGCTGCCAGCCC 6699492 36 100.0 35 CTGCCAGCCC .................................... AGCGGCAGGCGGAGCAGGACAAGCGACTGCTCGAG 6699563 36 100.0 37 ACTGCTCGAG .................................... CGGTTCCCGGGTCCCGGGTCCGGTGGGTCCCGGGTCC 6699636 36 100.0 35 TCCCGGGTCC .................................... ACGCGCGCTTCGGCCTGGCGTACGTCTTCCGCCCA 6699707 36 100.0 36 CTTCCGCCCA .................................... TACCAGGCCGTGAACGAATCGATCAGGGTCTGCTGA 6699779 36 100.0 39 GGTCTGCTGA .................................... GCGGAACTGCAAAAGGTGGGGCGGAGCGCCCTGATCGCC 6699854 36 100.0 38 CCTGATCGCC .................................... CCTCTGTGTTGGGACCCGCGGCGGGGCCGGTGATGCTC 6699928 36 100.0 37 GGTGATGCTC .................................... CTGCTCGCGCCCGCCGGTTACGGTTGCGTGCTGCGCG 6700001 36 100.0 35 GTGCTGCGCG .................................... TTGATCGGCGCGGACGATCATAATGTGTCAGTGTC 6700072 36 100.0 37 TGTCAGTGTC .................................... GGGCAATATCGGTAGCAAGGGTATATTCTTGACCGTC 6700145 36 100.0 35 CTTGACCGTC .................................... CCGGGGCCGCGCTACGGGGCGACGTCCGACGATCG 6700216 36 100.0 35 CCGACGATCG .................................... GACCGGTAGTTCGAGCGACGCCCAGCCTTTACGCT 6700287 36 100.0 37 CCTTTACGCT .................................... GCCGTCTCCGCCTTCGTATCCGGGCGAATATATGCCC 6700360 36 100.0 39 ATATATGCCC .................................... GAGCGCGTGCGCTGGCAACGTCCGTCCGACGAGCAGGGT 6700435 36 100.0 37 CGAGCAGGGT .................................... TCCCCATTGACCACCCGCACGCCGGCCAGCTCGACGT 6700508 36 97.2 36 AGCTCGACGT .A.................................. GGTGCTGAGGTACCCCGGCGGCGGCGGCTCGTTCTT 6700580 36 100.0 37 GCTCGTTCTT .................................... CTGTTGAGGAAGGTGGACCGCGCTGGTGTGATGGACC 6700653 36 100.0 36 GTGATGGACC .................................... CACCGCGCTCGGTGGTTCCGGGCGCCTCGTGTTCAC 6700725 36 100.0 36 TCGTGTTCAC .................................... CGCATGATAGCAGCCTGGTCTCGGCCTACGAGATAT 6700797 36 100.0 36 TACGAGATAT .................................... TCGCCGTCCGTTCGCGTCGGCCGCACGACGACGCGC 6700869 36 100.0 36 GACGACGCGC .................................... CTCGTGGAGCCGGTCGCGCTGCTCGCTCGCGCGCTG 6700941 36 100.0 35 TCGCGCGCTG .................................... CAGTTCGGCCGCGCATTCTAGGCACGCCTCGCAGG 6701012 36 100.0 40 GCCTCGCAGG .................................... ACCGCCCGCAAGCGCGCCCGCGGGCGCCCGCGGGCGAAGG 6701088 36 100.0 36 CGGGCGAAGG .................................... CTGGCGGCCCGCTGGGCCGCTGCTCGGCTGCCACTC 6701160 36 100.0 36 GCTGCCACTC .................................... TCGGACGAGTCCCCCATACGCGTGGTCGCGATGTAG 6701232 36 100.0 37 CGCGATGTAG .................................... GGCGCCCCGCCGGCCCCGGCCCCGGCCCCGGGCGGCT 6701305 36 100.0 36 CCGGGCGGCT .................................... GCTCTATACGGGATATTTGGGAACATTTCCGAAGTG 6701377 36 100.0 38 TTCCGAAGTG .................................... GACAAAATGAACGGTTACACGCGTTCGGCGTGTACTGT 6701451 36 100.0 35 CGTGTACTGT .................................... CTCATCTCGTAGTTCTTCATTTTGGCTCCTCGGGC 6701522 36 100.0 36 CTCCTCGGGC .................................... TCGATCAAGGGCCTCATCGCCTCGATCTCGAGCGGC 6701594 36 100.0 35 CTCGAGCGGC .................................... CAGACTTCAAGATCTTCAAGCCGCCTTGGGTTTAA 6701665 36 100.0 37 TTGGGTTTAA .................................... GCGACCATGTTTCTGTCGAGCGCGATCTGGGCCGCAC 6701738 36 100.0 36 TGGGCCGCAC .................................... TTCATCGTTGATTTCTCCCCGGACGCCGCGACGCGG 6701810 36 100.0 34 CGCGACGCGG .................................... CGCAAAACCTGCGATCACCCATTCCCCCCGGGAC 6701880 36 100.0 34 CCCCCGGGAC .................................... GCCCCAAAATTGGCCATTGCGATTCATGAGCTTG 6701950 36 100.0 36 CATGAGCTTG .................................... CGACCGCGCGGGCGGCCATGTCGTCGGCGGCCCAAA 6702022 36 100.0 42 GCGGCCCAAA .................................... GGCCTCAAACCCGGCGATATCGTACTGCTCGTGGTCGCCGCC 6702100 36 100.0 37 GGTCGCCGCC .................................... GGACACGGCCGTCTGCGACGTCGTCACGCCTCCCTGC 6702173 36 100.0 GCCTCCCTGC .................................... TCGCTCACGACGGCTCGCACCGACACGCGCTTCTT ========== ====== ====== ====== ========== ==================================== 188 36 36 GTTTCCACGACCCAACAGTCGTGGCCTCATTGAAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [8,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.90,-9.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [41.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [709,420] Score: 0/0.18 # # Final direction: F [0.68,0.37 Confidence: LOW] >NC_013501 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1886878 29 100.0 38 NNNNNNNNNN GAAT.TCC...........T......... AGCAATGAGACGAATCTTGCCACACCGATCAGAACACA 1886945 29 100.0 39 NNNNNNNNNN ............................T TAGACCGGAAGCACGCCCACTCCCACATCGTACGTCGCC 1887013 29 100.0 38 NNNNNNNNNN ............................T CTTGCCGTCCAGAAGCTCGATGCGCTTCGCAAGCTCCC 1887080 29 100.0 36 NNNNNNNNNN ............................. ATGAAAGCAAAGCTTGATTTTGATCTTTAAACAAAA 1887145 29 100.0 39 NNNNNNNNNN ............................. AGAAGGCTGGCAATATATCATCTCTGCACGCGAGACGCC 1887213 29 100.0 38 NNNNNNNNNN ............................. TTTCACAAACGTGTATATTGATACGATATCGTGCGCCC 1887280 29 100.0 38 NNNNNNNNNN ............................. TATTGCACGGGATGTACGGGAGTGGATCTGCTCCCGCC 1887347 29 100.0 37 NNNNNNNNNN ............................. CGGCCCGGGCGATCTTGTCAACTACGTGCGCGTCCAA 1887413 29 100.0 39 NNNNNNNNNN ............................. GGAGTTGATGGCGGAGCAGGTGGAGACGGCGGAGCAGCA 1887481 29 100.0 37 NNNNNNNNNN ............................. GCCTGCAGGACCGGCATCGTATTCTCTCCAACACGCA 1887547 29 100.0 37 NNNNNNNNNN ............................. AATACGGGGACCGGGCCCAAGCGCCCGACAAGCTCCA 1887613 29 100.0 39 NNNNNNNNNN ............................. CAAACCAGCCTGCACCATGAAGTTAGTGCAGGACCCCAA 1887681 29 100.0 39 NNNNNNNNNN ............................. GATTTTAGGATTGAACCCCTTTCTCGCAACGAAACCTAA 1887749 29 100.0 37 NNNNNNNNNN ............................. TTGAGCTTCCGGCGTACGCCATTCTTGCGATCGGACA 1887815 29 100.0 37 NNNNNNNNNN ............................. GCCTGCAGGACCGGCATCGTATTCTCTCCAACACGCA 1887881 29 100.0 36 NNNNNNNNNN ............................. GCCTGGAAGCAGGCGCTGGAGTGGTCGCGCATGAAA 1887946 29 100.0 39 NNNNNNNNNN ............................. CTTCCAGATCCGAAATACTGCGCGCCAATTCGTCGACCA 1888014 29 100.0 40 NNNNNNNNNN ............................. GAGGTGCACCATGAAACCGGTCTTCGCTCGCTCGCCTAAA 1888083 29 100.0 38 NNNNNNNNNN ............................. CACAACGCTGTTTGAGTAATGCCTTATTCACAAGTCAA 1888150 29 100.0 36 NNNNNNNNNN ............................. CGTCGGCGGGCGGCAAATGCAACGTTTCCGCAACAA 1888215 29 100.0 36 NNNNNNNNNN ............................. TCTCCAACCTCTCCGACGCAGGAAATCTCGCGACGG 1888280 29 100.0 37 NNNNNNNNNN ............................. GCCAGCTCACCGAGATCCGCACTAATAGCTGCGAGGG 1888346 29 100.0 38 NNNNNNNNNN ............................. CACAACGCTGTTTGAGTAATGCCTTATTCACAAGTCAA 1888413 29 100.0 36 NNNNNNNNNN ............................. CGTCGGCGGGCGGCAAATGCAACGTTTCCGCAACAA 1888478 29 100.0 37 NNNNNNNNNN ............................. TTAAACGTGCGTTCGTATTCTTGGCGGATAAGCAGAA 1888544 29 100.0 38 NNNNNNNNNN ............................. GCGCCCAGCCACGCTGCAGCAAGCAGCATGCTCTGCCG 1888611 29 100.0 38 NNNNNNNNNN ............................. CGGTGGGATCACTTCGAGGTACTTCATCGCAGGACTAG 1888678 29 100.0 38 NNNNNNNNNN ............................. CCATTGGAGGTCGCCATGCGCTACACAGTACGCATTAG 1888745 29 100.0 37 NNNNNNNNNN ............................. ATATATCTGCGGAGTCTCCGCCCGGCTTTCCGGTACG 1888811 29 100.0 38 NNNNNNNNNN ............................. ATCAGAACGGCGGGCATTCCGGTGGAAATGCGCAAAGG 1888878 29 100.0 38 NNNNNNNNNN ............................. CTTACTTCGTATGAACTAATCGTTGTCAAATTCACAAG 1888945 29 100.0 39 NNNNNNNNNN ............................. CGGCCGAAATCGTTGCCGGCTTCCAACAAAATTTGAGTG 1889013 29 100.0 36 NNNNNNNNNN ............................. CTATAACTTCCGTTCGCGTCGATCAAAAAAACAAAG 1889078 29 100.0 39 NNNNNNNNNN ............................. ATATGCGAATAGATCGGTCCAAATGGCGTTGGGTTGTCG 1889146 29 100.0 37 NNNNNNNNNN ............................. AGGATTGAGCTGGCAGTAGTGGCGGTACAGGCGGATG 1889212 29 100.0 36 NNNNNNNNNN ............................. CTACTCGGGTTCGCCGAGCGCTACATCGATCCGTCG 1889277 29 100.0 38 NNNNNNNNNN ............................. AACGGCAAAGACCTGCGCGAGACCGTGCAGGCCATGCG 1889344 29 100.0 38 NNNNNNNNNN ............................. CGAGCAGCCGCCAGCGACCAGAACCATGCTGGCCTTCG 1889411 29 100.0 36 NNNNNNNNNN ............................. TTACCTGCCTTATCTGCCTTGCCAGACTTCTTACCG 1889476 29 100.0 36 NNNNNNNNNN ............................. TTTTCGGCGTAGAGGGGGATGTCGAGCAGTTGAGAG 1889541 29 100.0 39 NNNNNNNNNN ............................. TTTGCGCTGATCTTAGCCATGACGTCCTCCGTTTTGTTG 1889609 29 100.0 37 NNNNNNNNNN ............................. TTATTTCAAGCGTGTTGAGATTTTGGGTGGCCCGCGG 1889675 29 100.0 37 NNNNNNNNNN ............................. CAGAGGCCGTTCGTCGACGCGCGCGAGCTCGCCGAGG 1889741 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 44 29 37 TTTCAATACCAAAAAGGTGCGATTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.97%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.60,-2.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [108,264] Score: 0.18/0.18 # # Final direction: R [0.37,5.09 Confidence: HIGH] >NC_013501 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2079114 30 100.0 35 GAATCGCCGC .............................. CAAGCACACGCAGCGTGCGCGTTGCCGTATCGCGC 2079179 30 100.0 35 CGTATCGCGC .............................. AAGTCGGCCCGCACTTCCAGGCGCTACCTGTTCCC 2079244 30 100.0 36 ACCTGTTCCC .............................. AAAAATGAGGACGTTCACAATTGAAGTCTCTCGTCG 2079310 30 100.0 37 TCTCTCGTCG .............................. GAGGGCGCTGCGCGATTGCGACCCATGTCCCCCTCTC 2079377 30 100.0 35 TCCCCCTCTC .............................. TCAACATCGCTCCCAACAAGCCCTCCCTGGACGAC 2079442 30 100.0 39 CCTGGACGAC .............................. GAGCATTGATCACAGTTCTCCGAAACACTCTCTATGAGA 2079511 30 100.0 36 CTCTATGAGA .............................. TGCCCATAGACAGCACCTCTGTTGAGTAGATGCTGT 2079577 30 100.0 36 TAGATGCTGT .............................. AAGATACGCAGAAAACCACAAATAAAAATAACCGTC 2079643 30 100.0 36 AATAACCGTC .............................. CGTCAAAGCCGATCGCCAGCACGCGACTGTCGCGCA 2079709 30 100.0 37 CTGTCGCGCA .............................. CATCCTCACGCGAAAGACGGCCGTCTCGGCTTTCGGC 2079776 30 100.0 37 GGCTTTCGGC .............................. CGGCGGCCCCACGTATTTAAAGCGCTGTACGCCAGCC 2079843 30 100.0 37 TACGCCAGCC .............................. GCTCGATGCACATGGCGCCAAAGAGCGGCACGTCCAG 2079910 30 100.0 36 GCACGTCCAG .............................. GCTGGACAACGGCCAGGGCCTGCCCGTCGATTTGTA 2079976 30 100.0 36 TCGATTTGTA .............................. CTGGAGGATCTGCAGCGGCGGATTCCGATCCTGGAG 2080042 30 100.0 36 GATCCTGGAG .............................. TTAACATCTGCCCGCGCTGCGCAGCGCGAGTGGTCC 2080108 30 100.0 36 CGAGTGGTCC .............................. CGTGCATCAACTGCGCCAACTGCCGCGCGCTTTCTG 2080174 30 100.0 36 GCGCTTTCTG .............................. CCAGCCAGCGCGGTGTTGGCGATAGTGAACATGTAG 2080240 30 100.0 38 GAACATGTAG .............................. GGCCCGCGAGCATGCTGCAGAGGCGGCGCGGAAGACTA 2080308 30 100.0 36 CGGAAGACTA .............................. ATCAGAAGAGTTATTTGCAACAAAGTTCGTATAAGC 2080374 30 100.0 37 TCGTATAAGC .............................. TCGCCAATCTGGCCGAAACGCCTATCTGTATTTCCTT 2080441 30 100.0 39 GTATTTCCTT .............................. TCTGCAATCCGGCCGGCGTGTCAATGCGGATAAATGTGC 2080510 30 100.0 36 ATAAATGTGC .............................. GCGATTCGTGCGAACGTGCGCCGGCGTCAGCAAGAG 2080576 30 100.0 36 TCAGCAAGAG .............................. CCGCTCCAGTGTGCTGCGCGAGGATGCGACGAGCAT 2080642 30 100.0 37 CGACGAGCAT .............................. CCGCTTCGCCGAGGGTGGGGCTGTGGAGCCCGAGCCT 2080709 30 100.0 36 GCCCGAGCCT .............................. CCTTTGTGTTTTAGTGATCCTTCTGGCGACAATATA 2080775 30 100.0 36 CGACAATATA .............................. GTTCCCGAGTTCGACTGTAAATCTGTAAGTGAAATA 2080841 30 100.0 37 AAGTGAAATA .............................. AGCCTCTGCCAATCCGTTTTCCCAGCTTAAATTTTGC 2080908 30 100.0 38 TAAATTTTGC .............................. GCGCCATTCCCATTGACAGACACATGACGCTGCCGGAT 2080976 30 100.0 36 GCTGCCGGAT .............................. GTACAAGTGTTGGCCGAAGAAAACGGGCTTGCGCCA 2081042 30 100.0 35 GCTTGCGCCA .............................. ACGGAGGTTTGCCATGCGTATCAATGAATTTCTCT 2081107 30 100.0 37 GAATTTCTCT .............................. TTTTGCATAGTTAAACAATTGTTCTTTGTTCTTAGCC 2081174 30 100.0 38 GTTCTTAGCC .............................. GTTATATCCGTTAACAATAAAACCGTTGGAGGTAGCTA 2081242 30 100.0 39 GAGGTAGCTA .............................. CGCTCGCTACGGCGGAAGACTGGCGGCTCGGCCGGCGTA 2081311 30 100.0 36 GGCCGGCGTA .............................. CGTACGTTTGGGAATAAGACAATTCCTCATCAAAAC 2081377 30 100.0 35 TCATCAAAAC .............................. GGCTGAGGTATGAAGCCGGTGTCATCTACTTCAAG 2081442 30 100.0 39 CTACTTCAAG .............................. GAGTACCTTCCTCAGAGCCAGCACAATCGGCCTTTCGGC 2081511 30 100.0 38 GCCTTTCGGC .............................. TCGCCATGTAGCGTAAACCTCAACAATAGACGACTCCC 2081579 30 100.0 GACGACTCCC .............................. CCGGCCTTTC ========== ====== ====== ====== ========== ============================== 38 30 36 ATTTCAATACCAAAAAGGTGCGATTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.60,-2.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [151,508] Score: 0.18/0.18 # # Final direction: R [0.37,4.68 Confidence: HIGH] >NC_013501 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 539686 28 100.0 33 NNNNNNNNNN ............................ CTAAACTAATGGTAGCATGATGTGGCTGGATAT 539747 28 100.0 33 NNNNNNNNNN ............................ CGTACCGGGCGCCGGTTTGTAACCCTTAATGCG 539808 28 100.0 33 NNNNNNNNNN ............................ CTATTCGTGAAGTCTCGCGCGGATCTGGCGCTC 539869 28 100.0 33 NNNNNNNNNN ............................ CGTGTACGTGAATGGATCGCACGTTATAAGGGA 539930 28 100.0 33 NNNNNNNNNN ............................ TCATTCTCGGGAAGTGCATTAGTGCAGCTAACG 539991 28 100.0 33 NNNNNNNNNN ............................ CATTTCGATCTCTTCGGGTGTGTAGATAGTTTG 540052 28 100.0 33 NNNNNNNNNN ............................ TTGCTGGAAAGCGCCGTGAAAGCGGGTAAGATC 540113 28 100.0 33 NNNNNNNNNN ............................ TTCGATGCAGATCGGCTCTTTCATCTTATTCTT 540174 28 100.0 33 NNNNNNNNNN ............................ CTGGCGAAGATAAGAAGGTGCTCTTCGCCGAGA 540235 28 100.0 33 NNNNNNNNNN ............................ CCTGGCCCGCGACTACGTGCGCGTCATGGCTGC 540296 28 100.0 33 NNNNNNNNNN ............................ CACTCCCTACCGTGTCAAGCCCTCACACTTCAG 540357 28 100.0 33 NNNNNNNNNN ............................ CTCTTCCAAAAGTTTCTATTGTGGAGCGTGTCC 540418 28 100.0 33 NNNNNNNNNN ............................ CCTCTGTGAGCCGCGAGGCCGACTCCCAAGGCC 540479 28 100.0 33 NNNNNNNNNN ............................ CGCAAGCCCAGGCGAATCTTAAAATGGCAACGG 540540 28 100.0 33 NNNNNNNNNN ............................ CTCGCCCGCTGGAAGACGGACCGCGGCGAATAC 540601 28 100.0 33 NNNNNNNNNN ............................ TCGTGTATGAGAATGCGATTTCGTCGACGAACT 540662 28 100.0 33 NNNNNNNNNN ............................ CTGGACGAATTTGCCCCCGGCCGTTGCATGGGC 540723 28 100.0 33 NNNNNNNNNN ............................ CTCGAACGGGCCTCTGCATCCTCTATAGAAAGG 540784 28 100.0 33 NNNNNNNNNN ............................ CTTTAGGCAAAAAATTCTGGAGGTTTCTCTTTC 540845 28 100.0 33 NNNNNNNNNN ............................ CCTACACGATATGGGATGCCGTAAACATCTACA 540906 28 100.0 33 NNNNNNNNNN ............................ CGACTCGGTCGGTCTGATTGGCCCGCCAGTCGG 540967 28 100.0 33 NNNNNNNNNN ............................ CGACTCGGTCGGTCTGATTGGCCCGCCAGTCGG 541028 28 100.0 33 NNNNNNNNNN ............................ TCGTTGCCACAGATCTGGCGGGAATGTGCGCCA 541089 28 100.0 33 NNNNNNNNNN ............................ CTCCCTTGGAAATAGAGCTGAACGGCACAGCGG 541150 28 100.0 33 NNNNNNNNNN ............................ CACGATCCAGTTCTACCTCGATCTTCTGGCGCT 541211 28 100.0 33 NNNNNNNNNN ............................ CCCTTCCGCGTAGAAACGGATCCGGTCCAGATC 541272 28 100.0 33 NNNNNNNNNN ............................ CCGTCCGAGGTGGCGAAGGATAAAGTGATTTGG 541333 28 100.0 33 NNNNNNNNNN ............................ CGTGCTGTATTACACGAAAACCAACCGCCATCT 541394 28 100.0 33 NNNNNNNNNN ............................ CTCGACGAGCGTGACGTACTTCGTGCCGACCAG 541455 28 100.0 33 NNNNNNNNNN ............................ CGTATAGACCTTGCCGTAGTGTTTTTTGCAGAA 541516 28 100.0 33 NNNNNNNNNN ............................ TTGCACTAACGTTGCACTAACGATTGCACTTTG 541577 28 100.0 33 NNNNNNNNNN ............................ CACATCGGGCACGCCATCAGGCCGCGTGAAGCC 541638 28 100.0 33 NNNNNNNNNN ............................ CCTGGGGCTTTCCAGGCTAAAGCAGTTTAAGAA 541699 28 100.0 33 NNNNNNNNNN ............................ CTTGATGAGCTTTTCCTGGAAGCGACCGATCAG 541760 28 100.0 33 NNNNNNNNNN ............................ CTCTTTCACGCCGATCAGGTGGACTCCCTCTTC 541821 28 100.0 33 NNNNNNNNNN ............................ CTAAACGGAGGTTTGCCATGCGCATCAACGAAT 541882 28 100.0 33 NNNNNNNNNN ............................ CTCTGCACGTCCAGCGCCAGGCCCACCGTGTGC 541943 28 100.0 33 NNNNNNNNNN ............................ CCTCTCTGCTCTACCCGAAAGCTTCCGGCCCTG 542004 28 100.0 33 NNNNNNNNNN ............................ CCTTAGCGGTTGTGGAAAGGGTTGAAAACGTAT 542065 28 100.0 33 NNNNNNNNNN ............................ CCGCTTCAAGCCCGACTTCGTGGGCGACGTGAA 542126 28 100.0 33 NNNNNNNNNN ............................ CGACCGTCTCCCCATCCTGCTGGGCCTTGTCGA 542187 28 100.0 33 NNNNNNNNNN ............................ TTCGATCTCCTGGTCGCCGATCCGGATGACCTG 542248 28 100.0 33 NNNNNNNNNN ............................ TTGCGCTTTGACGGACTCGGCCACCTGCACCAG 542309 28 100.0 33 NNNNNNNNNN ............................ CTTTCGGCGCAGCGCCAGCTGCTGACGGAAGTG 542370 28 100.0 33 NNNNNNNNNN ............................ CGTCACGAAGAAAGGCTCAGGAAGCAGGTCCTG 542431 28 100.0 33 NNNNNNNNNN ....C....................... TTCGAATGGTGTGGTGTATAGGTACTTAGACGC 542492 28 100.0 33 NNNNNNNNNN ....C....................... CTATGATCGACTTATGAAAAAGTTGAACATTCG 542553 28 100.0 33 NNNNNNNNNN ....C....................... CTGTTGATTACGTCCGCTTCGTAAACATCGCGC 542614 28 100.0 33 NNNNNNNNNN ....C....................... CAGCACCCGCTCGGTCGATCCGTCCGGGCCGCC 542675 28 100.0 33 NNNNNNNNNN ....C....................... CGTGATCGTGCGCTCAGCCATTCTCTTGCCGCA 542736 28 100.0 33 NNNNNNNNNN ....C....................... TGCCAGCGATACGCCGCAGCGACTTCGGATTGA 542797 28 100.0 33 NNNNNNNNNN ....C........A.............. ATGGCCGTCGATCTGGCCTACATTTACGACAAG 542858 28 100.0 33 NNNNNNNNNN ....C........A.............. TCCAGACCGGCAAGCCCTGGCCGTTATCAAGCT 542919 28 100.0 33 NNNNNNNNNN ....C........A.............. CGACGGCACGACCTACGTCATTCCGAACAACGA 542980 28 100.0 33 NNNNNNNNNN ....C........A.............. CTATGCGGAGCGCCTCTTGCCGGCCGAGACGGT 543041 28 100.0 33 NNNNNNNNNN ....C........A.............. CTGCCGCCGGGTTTGCCGCGCCGCTCCCAGAGG 543102 28 100.0 33 NNNNNNNNNN ....C........A.............. CTTCCAGGCGCATCACTTTTTCGGATAGATCCA 543163 28 100.0 33 NNNNNNNNNN ....C........A.............. GTGCCTCTTCGGCCGTGTACACGGAGCGGCAGA 543224 28 100.0 33 NNNNNNNNNN ....C........A.............. CGATCGTAAAGCGGTAATGCTCGAGGCGTCGCA 543285 28 100.0 33 NNNNNNNNNN ....C........A.............. CTAAGGGAAAGGGCCGCCCTTCTTTCCGAAAAG 543346 28 100.0 33 NNNNNNNNNN ....C........A.............. CAAAGCCATGGAGCGCCCTGTGATTCGCATGCT 543407 28 100.0 33 NNNNNNNNNN ....C....................... CCAGCGCCAGGTTGTGGCGCCGCGCGTAGAGAT 543468 28 100.0 33 NNNNNNNNNN ....C........A.............. TCCGGCCGCGATGCAAATGGTGCGCATCGTCCA 543529 28 100.0 33 NNNNNNNNNN ....C........A.............. CCACGCGCTGAGGCCGTCATGGTCGAAGATGCC 543590 28 100.0 33 NNNNNNNNNN ....C........A.............. CCCGGAAGAAAAAAGAGGCCCGAAAAAAAAAGC 543651 28 100.0 33 NNNNNNNNNN ....C........A.............. CGAGGAGCTGGTGCGCCAGGAGGCCGTCCTGGA 543712 28 100.0 33 NNNNNNNNNN ....C........A.............. TTACGCCGCAGATCCCCTCTGATCTCTTTATTC 543773 28 100.0 33 NNNNNNNNNN ....C........A.............. TCGTTTCAAAACGGGTACGATTATCTTCGTCTG 543834 28 100.0 33 NNNNNNNNNN ....C........A.............. TTATCCCGTCCTCGACAAATGCCGAGGGTGGGA 543895 28 100.0 33 NNNNNNNNNN ....C........A.............. CAGAAAAGCGCGGCCTATCGCTCATCGAAGAGC 543956 28 100.0 33 NNNNNNNNNN ....C........A.............. TCAGATTAGGGCCACCAATGGGGCGCTAGCTGT 544017 28 100.0 33 NNNNNNNNNN ....C........A.............. TTGGTGAAAATGCGGTAAAGACTGCGTGAAGAA 544078 28 100.0 33 NNNNNNNNNN ....C........A.............. CAATACTTTCACAATACCATCGCCAGGGGCCAG 544139 28 100.0 1 NNNNNNNNNN ....C........A.............. NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 74 28 33 GGTGTCCCCGCACCCGCGGGGATAGTCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [61.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [53,672] Score: 0.18/0.18 # # Final direction: F [0.68,0.55 Confidence: LOW] >NC_013502 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 119652 36 100.0 36 NNNNNNNNNN AAAAT...ATATGTCCGAG..C.............. TCTCACTCCGGGTGGACCGAGGTGACCGCGTACAGC 119724 36 100.0 39 NNNNNNNNNN .................................... CGCCGTCGGCGGCGAGTTCGTTCAGAATGTCGGTAGTAA 119799 36 100.0 35 NNNNNNNNNN .................................... GGAGCACGGCGCCCAGACCCTGCACGCGCCAGCAC 119870 36 100.0 36 NNNNNNNNNN .................................... GCAGCGTGCCCTAAGGTTCTGTACACGCGAAGGCCT 119942 36 100.0 35 NNNNNNNNNN .................................... TTCAAGCGGAACGCCGTAGTGACGCCAGACCCACA 120013 36 100.0 38 NNNNNNNNNN .................................... CGGAGGACGTGCTGCGCCGGCGCCGCCTGCAACTGAGG 120087 36 100.0 36 NNNNNNNNNN .................................... GATCCGTGGAGGGATCCGGTTTATTCCATTTCCATC 120159 36 100.0 38 NNNNNNNNNN .................................... ATGCGACATCGATCGGACGCTACGGCGTGCGCTACATG 120233 36 100.0 36 NNNNNNNNNN .................................... CCAGCTTGCTCAGAGTAGCGCTGAACTGGATCAGAT 120305 36 100.0 36 NNNNNNNNNN .................................... GCCGGGTGCGATCCGCTGGAGCGGATCGATGGCGCA 120377 36 100.0 36 NNNNNNNNNN .................................... CGAGGTGCCGCTGTCCGGCCTGCACGCAGTTTATAC 120449 36 100.0 35 NNNNNNNNNN .................................... CCGGTGCCGCCTCATATCGCCTTCAGACGCTGTCA 120520 36 100.0 36 NNNNNNNNNN .................................... CTTCGTGGCGCTTGATCAATTGTTTAGTCTTGTAGC 120592 36 100.0 34 NNNNNNNNNN .................................... TCAACTCCCGGATGAGGTCGAGATCCGCTGCTGG 120662 36 100.0 35 NNNNNNNNNN .................................... TTCAAGCGGAACGCCGTAGTGACGCCAGACCCACA 120733 36 100.0 35 NNNNNNNNNN .................................... GGTGCTGGCAGGAAATACTACCTGGGCACTGACGT 120804 36 100.0 38 NNNNNNNNNN .................................... GCCGTACTCGGCCCAGAGATCCGAAGGCGCCGGCTGCG 120878 36 100.0 35 NNNNNNNNNN .................................... TTTTCACCAGGCGCTGGACCGCGACGGATCCTTCG 120949 36 100.0 37 NNNNNNNNNN .................................... TTGTACAAGCGGTAGCGTCCCTGAACCAGACCCACAT 121022 36 100.0 38 NNNNNNNNNN .................................... CTTCTTCGTCGCATTCGATTCTGTATTGCGACAGTGAA 121096 36 100.0 37 NNNNNNNNNN .................................... CCGAAGTTTTTGAGCCGCTCAGCATACCGATTGTAAA 121169 36 100.0 38 NNNNNNNNNN .................................... GACGTGGTCGGTCGCGCTCTCGTAGAGCCACCTGAGAG 121243 36 100.0 37 NNNNNNNNNN .................................... CTCTCCGGCTTCTCCCTTTCCTGAGGCACAGGCTCAA 121316 36 100.0 38 NNNNNNNNNN .................................... CGAGCGTGGACGCGTTGGCTTTGAGCGCGTCCACGATA 121390 36 100.0 37 NNNNNNNNNN .................................... CACGCAAGCGTGTACTATTGGTCACGCGGAAGGCCTA 121463 36 100.0 36 NNNNNNNNNN .................................... AAGCGAGGGGGCGCTTAAAGGCGCCCCCTCGCTTGA 121535 36 100.0 37 NNNNNNNNNN .................................... AAGCGAGGGGGCGCTTAAAGGCGCCCCCTCGCTTGAG 121608 36 100.0 34 NNNNNNNNNN .................................... AGTCGAGCGGCGGCGGCTCCTCGGAGAAAGCTTT 121678 36 100.0 38 NNNNNNNNNN .................................... TCGACGACCACGGCGAAGTGCGCCAGAAGTCCGTTGGC 121752 36 100.0 39 NNNNNNNNNN .................................... CAGACCGCAGGCGCTGCTGGAGCTGGACGAGGAGAAGAA 121827 36 100.0 38 NNNNNNNNNN .................................... TAGCTGGCTCTGACAACGGCGCGTGTAGCCTGCAATCG 121901 36 100.0 35 NNNNNNNNNN .................................... CCCGCGAAAAAAGCGCCCTGAAAAGCCTTCTTTAA 121972 36 100.0 37 NNNNNNNNNN .................................... CTGCTCGGCGCGCGTCGCATCGCAAGACCGATTCCTG 122045 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 34 36 36 CCTTCAATGCTGCCGTAGCTATTTAGCTACGGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis suggestion: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [40.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [555,194] Score: 0.18/0.18 # # Final direction: R [0.18,0.68 Confidence: MEDIUM] >NC_013502 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 24096 37 97.3 41 TGAAATACCC ...T................................. CAGGTATTATGACGAAGACTTCGAATGTGAAGTCTACGTCT 24174 37 100.0 42 GTCTACGTCT ..................................... ATCGTCCTGCAGCCGACCGAAACAGAAGTGACCCTCATCAGC 24253 37 100.0 36 CCTCATCAGC ..................................... TGGACAGTCATATCGAAGTCGGCCCCTACATTCTGC 24326 37 100.0 41 TACATTCTGC ..................................... TTTTTCAGAGATTTTCGCCCGATTCGTTCTTATCGTTTTAT 24404 37 100.0 36 ATCGTTTTAT ..................................... GGTCATATGCACCGTGCATATTGACCGGGCTCGGGA 24477 37 100.0 43 GGGCTCGGGA ..................................... GGTTTTCTGGTGTTGCATGTTTCACTAAAACCAGACGGAGCCA 24557 37 100.0 42 GACGGAGCCA ..................................... GCGCTGGGACTAAAGGACAGGTAAATAGAGCGGGCAGCTCAA 24636 37 100.0 50 GGCAGCTCAA ..................................... ATGAGATCAGAGAACTAAAAAAAGTAAAGGAGGAAAACTATGCTCTACAT 24723 37 100.0 TGCTCTACAT ..................................... CCCATTGTTA ========== ====== ====== ====== ========== ===================================== 9 37 41 GTCGTAATCCCCTTTTCATCGGGTCAAGTCTTCGGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.30,-4.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [562,188] Score: 0.18/0.18 # # Final direction: R [0.18,1.15 Confidence: HIGH] >NC_013502 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 32278 37 100.0 43 TCATCATGGC ..................................... GAAGGAAATGTTCAACGGGCCCAAGGGGCGTCGGGCCCACAAA 32358 37 100.0 43 GGCCCACAAA ..................................... GAAGGAAATGTTCAACGGGCCCAAGGGGCGTCGGGCCCACAAA 32438 37 100.0 37 GGCCCACAAA ..................................... CAGAAGTTCTGGTTGGTGGTGTGTAACAACAACAACA 32512 37 100.0 42 AACAACAACA ..................................... GTGGGCCCAGAAGCAGGGCTTTGCTCGCGTAAGGCGCGGCAA 32591 37 100.0 45 GGCGCGGCAA ..................................... GATTATCCCCACTGTCGACGGATATGAGTGGGGTGGCTGGGATGA 32673 37 100.0 46 GCTGGGATGA ..................................... AGAAGGGGCAATCGGCCCGGAGTCTACCTGCTCTCCAGGCGGAGAG 32756 37 100.0 39 AGGCGGAGAG ..................................... AAAATCAATCAGGCTGGCTTCGTGGTAATTGCGAAGTGT 32832 37 100.0 47 TGCGAAGTGT ..................................... CTGTATGTTTCTGTGGCGGTTAAAATGAGAGAGAAGCATGACACTGC 32916 37 100.0 44 ATGACACTGC ..................................... GTGGAGAAAACTCGAAAGGGCTACCCCGCCCTATGGGAACGGGG 32997 37 100.0 46 GGGAACGGGG ..................................... GACACATCTTCGTCGTGAGCGCTCAGTCCCAGCACAGGGCTATTGA 33080 37 100.0 GGGCTATTGA ..................................... CCCATTGTTA ========== ====== ====== ====== ========== ===================================== 11 37 43 GTCGTAATCCCCTTTTCATCGGGTCAAGTCTTCGGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.30,-4.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [38.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [236,290] Score: 0/0.18 # # Final direction: R [0,1.01 Confidence: HIGH] >NC_013502 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 55091 37 100.0 38 CCACCCGTTT ..................................... AGGGGCCCGGAGACTATACCTAGCGGCCGTCCAGATCG 55166 37 100.0 44 GTCCAGATCG ..................................... TGAGGTGGCGGAGGTGCTGCTGCATGCCATGCGCATAATCGTAG 55247 37 100.0 41 ATAATCGTAG ..................................... CGCCTGGTCAGCGGAACGCTCTACTACAACCCATATACAGA 55325 37 100.0 36 CATATACAGA ..................................... TGTTGGCCTCGCTGGAGCAATGGGCCAGCGAACATG 55398 37 97.3 49 AGCGAACATG .............................T....... GGACATCCTTCTTTTCCGGGGACGCGGTGCCAACCGCGAGATCGTCGAA 55484 37 97.3 46 GATCGTCGAA .............................T....... ACATTTCTGATGCCAGAGACCGATCGCACTGAGGCAGTTGAGGTAG 55567 37 97.3 GTTGAGGTAG .............................T....... CCCATTGTTA ========== ====== ====== ====== ========== ===================================== 7 37 42 GTCGTAATCCCCTTTTCATCGGGTCAAGTCTTCGGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.30,-4.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [170,197] Score: 0/0.18 # # Final direction: R [0,0.74 Confidence: HIGH] >NC_013502 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 65829 37 100.0 44 TCCGGGTGGC ..................................... AAGAACTGGCTCATCGAGATCGGCGGGCAGGCTTATGGTCTGTA 65910 37 100.0 40 ATGGTCTGTA ..................................... TATTCCTAACCTGAACAGCGACGTCATAACCGACGAGCCC 65987 37 100.0 41 CGACGAGCCC ..................................... TACATCACGATTCGAGATCGCACGCGGCGAGTACTTTCTCG 66065 37 100.0 47 TACTTTCTCG ..................................... GGCAAAGAGACTGTATGCCAGGCGGACGTCACCCCAGCGCTTCGACG 66149 37 100.0 47 CGCTTCGACG ..................................... GGCAAAGAGACTGTATGCCAGGCGGACGTCACCCCAGCGCTTCGACG 66233 37 100.0 41 CGCTTCGACG ..................................... AGGACACCGCGTCCACTTGTATAAGACGCCACACCCATACC 66311 37 100.0 CACCCATACC ..................................... CCCATTGTTAC ========== ====== ====== ====== ========== ===================================== 7 37 43 GTCGTAATCCCCTTTTCATCGGGTCAAGTCTTCGGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.30,-4.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [50.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [208,477] Score: 0.18/0.18 # # Final direction: R [0.27,0.92 Confidence: MEDIUM] >NC_013502 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================= ====== 69468 17 94.1 45 CAGCCTGTTA ........G........ CAAAACCGCTTTATTTTGACTCGAAATGCACAATTATGACCTGAC 69530 17 100.0 59 ATGACCTGAC ................. GAGGCATCTCCACCCCACCCGCGAAAATCGGCCAATTTCGCCGATTCCGGATCGGTCAA 69606 17 94.1 45 GATCGGTCAA ........G........ TAAAATCCTTCTGTTTTGTCGAAATATGCACAATTATGACCTGAC 69668 17 100.0 ATGACCTGAC ................. CGGCTTTTTTT ========== ====== ====== ====== ========== ================= 4 17 49 TTCGTACACTTGATCCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.94%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [36.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [34,274] Score: 0.18/0.18 # # Final direction: R [0,0.86 Confidence: HIGH] >NC_013510 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1034599 30 100.0 36 GCCTGTGCCC .............................. TGGTTCGGAAGCCGACCTGTACCGGCAGCTCCACGT 1034665 30 100.0 37 AGCTCCACGT .............................. ACCTGATCGAACTCGCAAAAAGGCAAGAGGAGATCGC 1034732 30 100.0 33 AGGAGATCGC .............................. ATGACCCGCTGGCCCCGCACGACCGCCATCTGT 1034795 30 100.0 37 CGCCATCTGT .............................. AAGACCGCTCCCGGCACAGGTCAGGTGTCCGGCACGG 1034862 30 100.0 TCCGGCACGG .............................. CCGAGAGTAA ========== ====== ====== ====== ========== ============================== 5 30 35 GTTGCGATCCCTCCAGGGGTGATGAGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [30.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [352,1199] Score: 0.18/0.18 # # Final direction: R [0.37,0.82 Confidence: MEDIUM] >NC_013510 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1044294 30 100.0 38 TTACTCTCGG .............................. GTGGGCCGGATATCGGAGTCCTGCGGGTTGGCAAGGAT 1044362 30 100.0 37 TGGCAAGGAT .............................. AGGCGAGACGCTCGGCGTATTCGGCGCCGACTTCAAC 1044429 30 100.0 39 CGACTTCAAC .............................. TTGGGGTCGACCACGTCCGGACCGGCGCCCTGTTGTCTG 1044498 30 100.0 37 CTGTTGTCTG .............................. CACTGCCAGGCGTACATGGGGTCGTCGACGCCGGGGA 1044565 30 100.0 38 ACGCCGGGGA .............................. GCCGGACCGAGGCTCCGGCCGAGGCCGCCGAGGCGCTG 1044633 30 100.0 38 CGAGGCGCTG .............................. GCCGACGGGTGCAGCTCCGGCCACTGCTGCGCCTGCTG 1044701 30 100.0 35 GCGCCTGCTG .............................. CGGGCGGAGCGGGCCGGGGCGGTGCCGGTCAGCAC 1044766 30 100.0 34 CGGTCAGCAC .............................. CGGCCTGGCCGGCGGCCGCCCTGGTGATCGCGAC 1044830 30 100.0 38 TGATCGCGAC .............................. CTCGGTGGCGTCTGCGCGGCGCTCGTCTCGCCGCTCGC 1044898 30 100.0 34 CGCCGCTCGC .............................. GCGGGCAGCGTGCCCTTGCGGTAGGCGACCTCCC 1044962 30 96.7 34 GCGACCTCCC ..........G................... ATGGTGATGCTGGACGCCGCCCGCCGCAGCACCC 1045026 30 100.0 38 CGCAGCACCC .............................. CCGTCCCAGTCCTGGAGCAGGATTTCACAGTCTCCGGG 1045094 30 100.0 36 AGTCTCCGGG .............................. TCCACAGCGGGCGGGGAGATCAGCAACGCCCCCAGC 1045160 30 100.0 36 CGCCCCCAGC .............................. TCCACAGCGGGCGGGGAGATCAGCAACGCCCCCAGC 1045226 30 100.0 37 CGCCCCCAGC .............................. TAGGTGCCCCACATGCGCAGGATGTCGCCGGTGCCAC 1045293 30 96.7 CCGGTGCCAC .............................T CAGATCAGC ========== ====== ====== ====== ========== ============================== 16 30 36 GTCGCTCATCACCCCTGGAGGGATCGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.40,-5.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [41.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [105,374] Score: 0.18/0.18 # # Final direction: F [1.05,0.55 Confidence: LOW] >NC_013510 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1050892 28 89.3 36 GTGGCGCAGC .........................--- AACCGCGCCCTCGGGCTGACCGGACAGTTGGACATC 1050956 28 100.0 33 GTTGGACATC ............................ GTAGTTCGATGAATTCTTCAGGGGTGCAGTAGA 1051017 28 100.0 33 GTGCAGTAGA ............................ CTGAACGCCCGCATCCGCGCCCGGCGTACCGAC 1051078 28 100.0 33 GCGTACCGAC ............................ GGCGGCGAACCGACCACTCCCGTGCCCGACCAC 1051139 28 100.0 33 GCCCGACCAC ............................ TGTTGCGTTTCCAGGTTCTCCCAGCTCAGACGC 1051200 28 100.0 33 GCTCAGACGC ............................ TCGATCCGGCCGCCCAGCACGCGCCGCCGGTAC 1051261 28 100.0 33 CCGCCGGTAC ............................ CCAGCAAAGAAGCCCTTGGCGGCGTCGGAGAAC 1051322 28 100.0 33 GTCGGAGAAC ............................ GGTGCTGTCCACCGCCGGCGGGGCCACCAGCTC 1051383 28 100.0 33 CCACCAGCTC ............................ GGAGCCGTCGTCCTCGGCCCCCCTGAGACCACC 1051444 28 100.0 33 TGAGACCACC ............................ CTGCTAGGCGGTGGGATCGCCTAGTGGGGCCGC 1051505 28 100.0 33 GTGGGGCCGC ............................ GGCACGTAGCCTTGTCGGTCATGGGGGTTGTCC 1051566 28 96.4 33 GGGGTTGTCC .......T.................... GCGGGCTTCGAAGCCGAACGCGGTGACTAGGTC 1051627 28 100.0 33 TGACTAGGTC ............................ AGAGAGCACCACCGGCACACCGTGTCGCCACGC 1051688 28 100.0 33 GTCGCCACGC ............................ ATCGCATCCTGCTGCAAGGTGCGAGTGAACCGC 1051749 28 100.0 33 AGTGAACCGC ............................ GGCCTGCGGGATGCGTTTGATGTTGGCGAGGAC 1051810 28 100.0 33 TGGCGAGGAC ............................ TACGACTATGTGGAGCTGGAGGACGAGGTCGGC 1051871 28 100.0 33 CGAGGTCGGC ............................ CCGCGAACTCCCCTGACCGTCCATCCCCACGCC 1051932 28 100.0 33 TCCCCACGCC ............................ TAGGGATGCCGCGCTCGTTGAAATCGGCGCAGA 1051993 28 100.0 33 TCGGCGCAGA ............................ CAGACCCGCATCGTCTACTCCACCCGCGTCGGC 1052054 28 100.0 33 CCGCGTCGGC ............................ TCCCGCAACCGCTGCCGTAGCTCCTCCCGCTGC 1052115 28 100.0 33 CTCCCGCTGC ............................ CTGGCCGTGACGAACATGGTCAGCGAGAACACC 1052176 28 100.0 33 CGAGAACACC ............................ ATCTTGGTGCAGTCGAAGGTGTCCGGCTCCACC 1052237 28 100.0 33 CGGCTCCACC ............................ TCCAACGCGGTCCGGGCCCGGTCCCACCACTGC 1052298 28 100.0 33 CCACCACTGC ............................ ACGACGTGATGAGCGGCGGGCTGTTGGCAAATC 1052359 28 100.0 33 TTGGCAAATC ............................ GGCCGTGTATGTACGGGACCGGCAGCCGTTCGT 1052420 28 100.0 34 AGCCGTTCGT ............................ TGCCACGCCGCGGAGCGTGATCCCCTGAGCCACT 1052482 28 100.0 33 CTGAGCCACT ............................ GCGCCGCAGCATTCGCGATGATCCGACCAGTGC 1052543 28 100.0 33 CGACCAGTGC ............................ AGGACCCCGGCGAAGACGACCTGTGGCAGGATC 1052604 28 100.0 33 TGGCAGGATC ............................ TCGAGAGATGCGCACCGGACCAAACTCGCCGAA 1052665 28 100.0 33 ACTCGCCGAA ............................ CTCGCCGAATTCCGCGATCCCATACGGGGCCTC 1052726 28 100.0 33 ACGGGGCCTC ............................ CAGTGTCAGGCGGTAGGCTGCACCGATCTCCGC 1052787 28 100.0 33 CGATCTCCGC ............................ ATCGTCAAGAATTTCCTCGGCGGCCTAAAGAAC 1052848 28 100.0 33 CCTAAAGAAC ............................ CGCGGGTGCGGCTGCGTGGGTCGCCTAGCGCCC 1052909 28 100.0 33 CCTAGCGCCC ............................ AGCTCATGAGTGACCTGCATCAGGAAGCCATAC 1052970 28 100.0 33 GAAGCCATAC ............................ GCCGATCAGAACGCGGCGATCACGGCCGTGAGC 1053031 28 100.0 33 GGCCGTGAGC ............................ TGGGCGCCCCGGCTGGTCCCCGGGGCGTTCTGC 1053092 28 100.0 33 GGCGTTCTGC ............................ GGCGCCACGCTCGCCGTCGACAGCTCGGCGTAC 1053153 28 100.0 33 CTCGGCGTAC ............................ CCATGCGCGGGCCCGCCCCGAGGTTGCAAGTAC 1053214 28 100.0 33 TTGCAAGTAC ............................ CCCGTGTGGCTGTCCCGCCACTCAGGGAACGCC 1053275 28 100.0 33 AGGGAACGCC ............................ CGCGGCAAGCACGCTTTTCGCGCAGCGTCAGGC 1053336 28 100.0 33 AGCGTCAGGC ............................ TTGTAGAGGACCCTCCGCCGCAGGGTGACCGGC 1053397 28 100.0 1071 GGTGACCGGC ............................ TGCATCCACCAGCAGCAGTCCGCACCCCAGCCCGGACCACCCCCGCCTGCGCGGGGAGCACGAGCGCACATCATCCATGCTGTCGCCGTAAGCCGGACCACCCCCGCCTGCGCGGGGAGCACGGGAAGCGGGAGAGGTACTCATCAAGGTGCTCCGGACCACCCCCGCCTGCGCGGGGAGCACTGTCTGGCCGACGCCGAAGACTTCCTCGGCCACGGACCACCCCCGCCTGCGCGGGGAGCACGCCTCCTCGCGGGCCTCGGCGGCCCGCAGCGCCGGACCACCCCCGCCTGCGCGGGGAGCACGACGTAGAGAGGGGGCTGGACATGTGGGCGAAGGGACCACCCCCGCCTGCGCGGGGAGCACCGCACCCACGCCTGCACATCCAGACGGCGCACCGGACCACCCCCGCCTGCGCGGGGAGCACTGACCGGGCGGGGCGACGGCCTGGGTGGCCTGAGGACCACCCCCGCCTGCGCGGGGAGCACCTCGCGCCCCACACCGACGGCCAGGCAGACCCCGGACCACCCCCGCCTGCGCGGGGAGCACAACGCTCGCCGCAGGGCGTGCACCTCGGCGGCCGGACCACCCCCGCCTGCGCGGGGAGCACACCGAGGCTCAATTCAAGCGGTTCACTCGCACCTGGACCACCCCCGCCTGCGCGGGGAGCACGAAGAAGACGAAGGGTGAGGGCTGATGCCCACCGGACCACCCCCGCCTGCGCGGGGAGCACGGCGACCCGTCGGACGCCTCCGCCCCCTCCGTCGGACCACCCCCGCCTGCGCGGGGAGCACCAACCTTTCGAAGTGCGCCTGGTTGTCGCCGCCGGACCACCCCCGCCTGCGCGGGGAGCACCGTAGGGGCCGGACAGGTTGCTCGGGTCGAACCGGACCACCCCCGCCTGCGCGGGGAGCACTCGTACTGCTCCTCGCCCAGCATGGCCTGGGCCGGACCACCCCCGCCTGCGCGGGGAGCACCCGGCGTCCAGCAGCCCGACCAGGGCCGTCCCCGGACCACCCCCGCCTGCGCGGGGAGCACGATGTCTACGTCGGTCAGCGGCCCAAACCCTAC 1054496 28 100.0 CAAACCCTAC ............................ CCCTTGCTGA ========== ====== ====== ====== ========== ============================ 43 28 57 GGACCACCCCCGCCTGCGCGGGGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [4,1] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [25.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1353,217] Score: 0.18/0.18 # # Final direction: R [0.55,1.05 Confidence: LOW] >NC_013510 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1073354 28 100.0 33 GTCAGCAAGT ............................ GTCAAGGGCTGGCACCGCCCCGGACCCGGGGCC 1073415 28 100.0 33 ACCCGGGGCC ............................ GGTGCGGGGGGTGACGTTGCGGCTGGGCATGGC 1073476 28 100.0 33 TGGGCATGGC ............................ GTGGAGCTGATCGGTGGGCCGTACGACGGGCAC 1073537 28 100.0 33 CGACGGGCAC ............................ GTGACAACATTGCCGGTAGAGACGGTCCCGAGC 1073598 28 100.0 33 GGTCCCGAGC ............................ GTTCCACACGCCGCGGATGCCCTTGTTGTAGAC 1073659 28 100.0 33 TGTTGTAGAC ............................ GGGCAAGTTGGCGTATTACGCCGATCTGCCGGG 1073720 28 100.0 33 ATCTGCCGGG ............................ GGTTCGACCCGAGCAACCTGTCCGGCCCCTACG 1073781 28 100.0 33 GGCCCCTACG ............................ GGCGTTTCGCTCGACCGGGTCTTTCACCGCCCG 1073842 28 100.0 33 TCACCGCCCG ............................ GGGTGGTGGGGTCGGCGGTCGGCAAAATTGCAA 1073903 28 100.0 33 AAAATTGCAA ............................ GGTGCTGGATGAGGACGTGGGCCGCGTTACATC 1073964 28 100.0 33 GCGTTACATC ............................ GGCGAGCGGACCGCACGTCCATGTGCCGTCGTC 1074025 28 100.0 33 TGCCGTCGTC ............................ GTGACCTGGGGGTCCACCACGGTCAGCGCCCTG 1074086 28 100.0 33 CAGCGCCCTG ............................ GTCCACGAGTGCCTTGACGGCGGTGTCGGGGTC 1074147 28 100.0 33 TGTCGGGGTC ............................ GTCTCCACGGTCTCCCTGCGCAGGAACGCGTCG 1074208 28 100.0 33 GAACGCGTCG ............................ GACTCTCGGCCAGGCCGACCAGCGCGAGGTCGG 1074269 28 100.0 33 GCGAGGTCGG ............................ AGCCGCCGCGCTGATCGACCAGACCATGATCGA 1074330 28 100.0 34 CCATGATCGA ............................ AGCGGGCGGCCAGCAGCTCATACTGCCGGTCGTC 1074392 28 100.0 33 GCCGGTCGTC ............................ GGTCTACTCGCTGGCCCGGTACAGGGAGGAGGC 1074453 28 100.0 33 GGGAGGAGGC ............................ GACGACTGCCGCACATCACCGCGGGCAACCAAC 1074514 28 100.0 33 GGCAACCAAC ............................ CACAACCCCCTGCACGCCTTCGAGCACCTGCCG 1074575 28 100.0 33 GCACCTGCCG ............................ GTACTCCTTGACCAGCGGCCGGTCCTCGCCGGT 1074636 28 96.4 33 CCTCGCCGGT .....T...................... GACGCCAACAAGACCGAGCTGGAGAAGCTCACC 1074697 28 100.0 33 GAAGCTCACC ............................ TTGGCAAGGGCGCGGCGCGGGCGGCAACGGCGG 1074758 28 100.0 GCAACGGCGG ............................ GCTGCTCGGT ========== ====== ====== ====== ========== ============================ 24 28 33 CTCTTCCCCACGCGAGTGGGGGTGATCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-11.90,-10.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1375,615] Score: 0.18/0.18 # # Final direction: F [1.23,0.37 Confidence: MEDIUM] >NC_013510 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1064326 29 100.0 32 NNNNNNNNNN ............................. GCGTCCGCCAGGGCCCGCCACCGCTGGAGCAG 1064387 29 100.0 32 NNNNNNNNNN ............................. CTGTACCGAGTGATCGGGCGGTGCAAGGTCGC 1064448 29 100.0 32 NNNNNNNNNN ............................. AGGTCCCCGCCTACCTCACCCTCGGCTTCGAT 1064509 29 100.0 32 NNNNNNNNNN ............................. GCGTCCGCCAGGGCCCGCCACCGCTGGAGCAG 1064570 29 100.0 32 NNNNNNNNNN ............................A TCGAAACACCGTTGATGTTGACGTCCACAATC 1064631 29 100.0 32 NNNNNNNNNN ............................. GTGCTGCAGGCCATCCAGGACCTGATCGCCCA 1064692 29 100.0 32 NNNNNNNNNN ............................. AGGCCCCGGGCGGTCGGGTCTGGTAGCCGCCC 1064753 29 100.0 32 NNNNNNNNNN ............................. CGCCTCTTGAATGGCCTCCTTTGGCGTATTCC 1064814 29 100.0 32 NNNNNNNNNN ............................. CTGACCGGCAAGCGCTGGAACGAGAACTGGGC 1064875 29 100.0 32 NNNNNNNNNN ............................. GCCGAGGAAGAGGCCCGGCTGCGGGCGGCGCA 1064936 29 100.0 32 NNNNNNNNNN ............................. GCTCCCGGGCCGGCGTCGGTCGTGGTCTTCAG 1064997 29 100.0 32 NNNNNNNNNN ............................. TCGTACGGCTCGTCGTCTCGCTTGCGAGTGCT 1065058 29 100.0 32 NNNNNNNNNN ............................. CCCGCTCGCGCGGGCTTTGATCTTGTTCAGCC 1065119 29 100.0 32 NNNNNNNNNN ............................. GCGACCGCGGTCGCTGCTGCGGTCGCCCGGGC 1065180 29 100.0 32 NNNNNNNNNN ............................. CCTTTGCTGGCCTGCTTGCCGGAGTCGAACAG 1065241 29 100.0 32 NNNNNNNNNN ............................. CAAAGTGCTCGGCCCGGTGGCCGACCTGCGCG 1065302 29 100.0 32 NNNNNNNNNN ............................. TGACAACATTGCCGGTAGAGACGGTCCCGAGC 1065363 29 100.0 32 NNNNNNNNNN ............................. TCGGCGCCGGGTGCGTATTCGCGGTGGATGGT 1065424 29 100.0 32 NNNNNNNNNN ............................. CGGATCACGGCGGGCGCGATCCGGCTGGGTGA 1065485 29 100.0 32 NNNNNNNNNN ............................. TATCCAGCAGGTCGTCGGCCTCGTTGGCGCCG 1065546 29 100.0 32 NNNNNNNNNN ............................. CCCGCCTGGCCCGCAGCGAATCCGCCCACGAG 1065607 29 100.0 32 NNNNNNNNNN ............................. TCGCCGGCCTGGTGTCGGTCGACGAGTTCAGC 1065668 29 100.0 32 NNNNNNNNNN ............................. GCGACGCTCTCGCAGAGCTGCAGCTCACCGCC 1065729 29 100.0 32 NNNNNNNNNN ............................. CTCTGATGATCGTCGGGCCGCCCGGCGTCGGC 1065790 29 100.0 32 NNNNNNNNNN ............................. GAGTACGTCGCCCGGGGCGGCGCGGTGGTGGC 1065851 29 100.0 32 NNNNNNNNNN ............................. GCGACGCTCTCGCAGAGCTGCAGCTCACCGCC 1065912 29 100.0 32 NNNNNNNNNN ............................. CCGCGGGTGAGGATGTCCAGGGCCTCCTGGGC 1065973 29 100.0 32 NNNNNNNNNN ............................. CGATCTCCCCCGACACCGGCCGGGGGTTGCGC 1066034 29 100.0 32 NNNNNNNNNN ............................. CGCCCGGCCCTGCTGCCCGCCGAGCCGCGGCC 1066095 29 100.0 32 NNNNNNNNNN ............................. CTCTCGGGGGCCATGGCCAAGGCCGGGCCGTG 1066156 29 100.0 32 NNNNNNNNNN ............................. TTTGTCCAGCTCGGCCTTTTGGGCCCGCAGTC 1066217 29 100.0 33 NNNNNNNNNN ............................A GCGGATGGGCGCCTTGGCATAGCCCTCGATCCG 1066279 29 100.0 32 NNNNNNNNNN ............................. GCGAGGAGACCGGCACCGGGCTCGACGGGGAG 1066340 29 100.0 32 NNNNNNNNNN ............................. CCTTTGCTGGCCTGCTTGCCGGAGTCGAACAG 1066401 29 100.0 32 NNNNNNNNNN ............................. CATCCTGCGTGCCGATGCGCAGACGCTGGCCA 1066462 29 100.0 32 NNNNNNNNNN ............................. ACCTGTTCGTGGTCGGTGCTGATGGTCAGCTC 1066523 29 100.0 32 NNNNNNNNNN ............................. GCGTCCGCCAGGGCCCGCCACCGCTGGAGCAG 1066584 29 100.0 32 NNNNNNNNNN ............................. GCGACCGCGGTCGCTGCTGCGGTCGCCCGGGC 1066645 29 100.0 32 NNNNNNNNNN ............................. TGGGGGCAGGATCCGCTCCGCACCGAGGCGGA 1066706 29 100.0 32 NNNNNNNNNN ............................. GTGCGCGCGGGCCTGTACGGGTCGGTGCGCGG 1066767 29 100.0 32 NNNNNNNNNN ............................. TGCACGGTACTGCCCAGCCGGACGTAGCGCCC 1066828 29 100.0 32 NNNNNNNNNN ............................. GCGGCCCCACCACCCTGACCAACGTGGCCCCC 1066889 29 100.0 32 NNNNNNNNNN ............................. AACACCCGGCCACCCGGGTCGATGTACAGCTC 1066950 29 100.0 32 NNNNNNNNNN ............................. ACCTTGACGGGCGTGTCGGTGACGGTGAATGA 1067011 29 100.0 32 NNNNNNNNNN ............................. ACCGGGCGGGGTTGTCGCCGAGCAGACGTAAC 1067072 29 100.0 32 NNNNNNNNNN ............................. TGGTTTCACCGGACCCGGTCGGGGCCTGCGGG 1067133 29 100.0 32 NNNNNNNNNN ............................. GTGCTGCGCGCCATCAAGCGCATCCCGCAGGC 1067194 29 100.0 32 NNNNNNNNNN ............................. GCCATCCGCCGCCCCCTCCCCTGCGCCGACCG 1067255 29 100.0 32 NNNNNNNNNN ............................. ATTGGGCGGAAGCCGACCTCGTCCTCCAGCTC 1067316 29 100.0 32 NNNNNNNNNN ............................. CGTCGGTGGCGGTCAGGGTGCACACCGAGTCG 1067377 29 100.0 32 NNNNNNNNNN ............................. GCCATCTCTCACCTCCCAAACTCTTGGCAACC 1067438 29 100.0 32 NNNNNNNNNN ............................. ATCCTCAACGCTCTGGTTGGTCTCGCCGAGGA 1067499 29 100.0 32 NNNNNNNNNN ............................. CAACCAACGTCGCCGGCCGCCCGTCCTGGTGC 1067560 29 100.0 32 NNNNNNNNNN ............................. GCGTTTATCACCAACGTCCTGGCTCCGGCGTT 1067621 29 100.0 32 NNNNNNNNNN ............................. CCGTCGCCTCGCTGGCTTGATCTCCCGCTACG 1067682 29 100.0 32 NNNNNNNNNN ............................. GCCCGCAAGACCCTCTGACCCCGCCCTCACCT 1067743 29 100.0 32 NNNNNNNNNN ............................. TACTCCTCCACCACGTCGTCGCTCTCGTTGAC 1067804 29 100.0 32 NNNNNNNNNN ............................. TTGATCGGCAGGTCCAGCAGCTCGCACAGGAC 1067865 29 100.0 32 NNNNNNNNNN ............................. GCGCTGGCCGAGGCCGCCCAGGCGGCCGGGGC 1067926 29 100.0 32 NNNNNNNNNN ............................. ACGGGGCAGCGGCTGCTTTTCCATGCCCGCGG 1067987 29 100.0 32 NNNNNNNNNN ............................. GTGTGGCGGCGGGCGCTGCTGGACTGGCTGCC 1068048 29 100.0 32 NNNNNNNNNN ............................. CCGCCGGAGATCACGATGACGCCGTCGCCGAG 1068109 29 100.0 32 NNNNNNNNNN ............................. ACGGCCGGGTCGGACAGGTGCTCGGCGAGCCG 1068170 29 100.0 32 NNNNNNNNNN ............................. GCTGCCGCACATGGGGAGCGCCGCCGAGGAAC 1068231 29 100.0 32 NNNNNNNNNN ............................. GCGGCCGCCGCGGGGCTCTATCTCTTTGGGCG 1068292 29 100.0 32 NNNNNNNNNN ............................. GACCTGGCCCCCGACCGGCTGAACGAGGCCGG 1068353 29 100.0 32 NNNNNNNNNN ............................. AGGAGCTGTACCTGGCCGAGCTGGACGAACAG 1068414 29 100.0 32 NNNNNNNNNN ............................. CTGCTCCCCTTCACGGAGTGGTGAGGATGGCG 1068475 29 100.0 32 NNNNNNNNNN ............................. CGCACTCCGCACCGGCGTCCGCACCCAGGATC 1068536 29 100.0 32 NNNNNNNNNN ............................. ACCAGCAGCCCGCACGGGGCAGGCCGGTCCTC 1068597 29 100.0 32 NNNNNNNNNN ............................. GCGCTGCACGAAACGACCGAGGCTCAATTCAG 1068658 29 100.0 32 NNNNNNNNNN ............................. TCGCCTGGCCGACCTGTCCTCCCGTGCTCAGC 1068719 29 100.0 32 NNNNNNNNNN ............................. ACGATCACCGACTACCTCGACCACGTCGCGCC 1068780 29 100.0 32 NNNNNNNNNN ............................. GTGGCGTACTCGGCCCGGTACAACCGCTGGTC 1068841 29 100.0 32 NNNNNNNNNN ............................. GCGTCGGTGGCGGTCAGGGTGCACACCGAGTC 1068902 29 100.0 32 NNNNNNNNNN ............................. GTGTAGGCGGGTATCGAGGCCTGCCGGTTGGG 1068963 29 100.0 32 NNNNNNNNNN ............................. CGCAGCTCGGCGGCGGCGGCGACGAGCACGAT 1069024 29 100.0 32 NNNNNNNNNN ............................. GGTCACGACCAGATGCTGCGGTTGGCCGCCTA 1069085 29 100.0 32 NNNNNNNNNN ............................. GAGTACCACCATCGAGAAATGGACTCGAGCCC 1069146 29 100.0 32 NNNNNNNNNN ............................. TGGGGGCAGGATCCGCTCCGCACCGCGGCGGA 1069207 29 100.0 32 NNNNNNNNNN ............................. GGATTCCTGACCGGTCTGTACCGGCAGCAGGC 1069268 29 100.0 32 NNNNNNNNNN ............................. CGAGGGATCGTGCCCAGCGGCAGGCCGCTGCC 1069329 29 100.0 32 NNNNNNNNNN ............................. CTCGCCGACGACCCAGTGCTGGTGGACGTGTC 1069390 29 100.0 32 NNNNNNNNNN ............................. TGACAACATTGCCGGTAGAGACGGTCCCGCGC 1069451 29 100.0 32 NNNNNNNNNN ............................. GTGGGCATCAGCCCTCACCCTTCGTCTTCTTC 1069512 29 100.0 32 NNNNNNNNNN ............................. TAGGGTTTGGGCCGCTGACCGACGTAGACGTC 1069573 29 100.0 32 NNNNNNNNNN ............................. CGGGCAAGCCATATGTGTGGGGCGGCGTCGGC 1069634 29 100.0 32 NNNNNNNNNN ............................. TCGTCCACCGTCGCCCAGCCGGACCCGTCGGG 1069695 29 100.0 32 NNNNNNNNNN ............................. GTGCTCTCCTTTACGGTTGGGTGGGGTGCTCT 1069756 29 100.0 32 NNNNNNNNNN ............................. GTAGGAGGCCGGGGATGCCCAACCCCCCCAAG 1069817 29 100.0 32 NNNNNNNNNN ............................. GCTGTCTACGAGGCCACCGGCACGTCGTCGAA 1069878 29 100.0 32 NNNNNNNNNN ............................. GTCGCGCACGGATAGCCGGTCTCCGGCTTGCT 1069939 29 100.0 32 NNNNNNNNNN ............................. TCGTAGTAGACGCGGCGGCCGACCTTGCCGAG 1070000 29 100.0 32 NNNNNNNNNN ............................. GAGGCCGCCGGCCCCTGGCCCGGCCCCCGCCC 1070061 29 100.0 32 NNNNNNNNNN ............................. ATCAGGGCGGGTGAGCTGCTGCCCGACCGGCC 1070122 29 100.0 32 NNNNNNNNNN ............................. CCTCCATGTCGGAGGGGTCCGGGAACTCGAAT 1070183 29 100.0 32 NNNNNNNNNN ............................. TAGGCGCCGGGGACGTAGAGAGGGGGGGCTGG 1070244 29 100.0 32 NNNNNNNNNN ............................. TAGCGGTCACCGGCGGGCACCTGGGCGCTGGT 1070305 29 100.0 32 NNNNNNNNNN ............................. TTGCCTGACTTGCCGTCCCCGCACGCACGGGC 1070366 29 100.0 32 NNNNNNNNNN ............................. ACGAGCTGGCCGCGGTGATGAATGGCCTTCCG 1070427 29 100.0 32 NNNNNNNNNN ............................. GCCAACCGGGAGGCCGCCCGCTACCGCACACG 1070488 29 100.0 32 NNNNNNNNNN ............................. CGTTGTACCGGCGCAGGCACTCATTCACCACG 1070549 29 100.0 32 NNNNNNNNNN ............................. GGGGTGCCCCGTGGCGCATCTGGGCACGGTGG 1070610 29 100.0 32 NNNNNNNNNN ............................. GGTCGTGAAGGTCAATCCCGCGTACACGAGCC 1070671 29 100.0 33 NNNNNNNNNN ............................. CGCAGATCCGCGGTGATCACACCGCCGCCGCCG 1070733 29 100.0 32 NNNNNNNNNN ............................. CCGAGTTTCCGAAGGAATCGGCCGGTCGGGCA 1070794 29 100.0 32 NNNNNNNNNN ............................. CGGTCACTGACCCCCCTTCGGGAGGGCCGCGA 1070855 29 100.0 32 NNNNNNNNNN ............................. GCGTACACCAGCTCGTTGGGCTGGTCGGGGCC 1070916 29 100.0 32 NNNNNNNNNN ............................. GGCGCTGATGAGTTGGCCGACAATGCGTCGGC 1070977 29 100.0 32 NNNNNNNNNN ............................. AGCCGCCGAGAGCCATGAGGACTTGCGCGGCA 1071038 29 100.0 32 NNNNNNNNNN ............................. GCCGCCGGATTGAGCAACCGCGTGCCGGCCTC 1071099 29 100.0 32 NNNNNNNNNN ............................. GTCACCGTAGAACGCCTGATCGATGCGCTTGG 1071160 29 100.0 32 NNNNNNNNNN ............................. CAGACGTTGCTCGTGACGCTCTCGTCATACCG 1071221 29 100.0 32 NNNNNNNNNN ............................. GTGAGAGCGCACCGGGACGGGTCGGCCACCGA 1071282 29 100.0 32 NNNNNNNNNN ............................. CACGTGATCCTCGAATCGCTGATTCAGGAGTA 1071343 29 100.0 32 NNNNNNNNNN ............................. GACCACGGCCCGGACGCCCCGTATGTGATCGC 1071404 29 100.0 32 NNNNNNNNNN ............................. GCACGTAGGCCTGGGTGGTCCAGTAGGTGGCG 1071465 29 100.0 32 NNNNNNNNNN ............................. TCGGCGAACCCCTGCTTGAGCTGCAGGTTCGC 1071526 29 100.0 32 NNNNNNNNNN ............................. AGTGGAACCAGAACCACCCGCGCGAGGGTGAG 1071587 29 100.0 32 NNNNNNNNNN ............................. GTGATCGTCGGGCGGCCCAGCCCGTCTACTCC 1071648 29 100.0 32 NNNNNNNNNN ............................A GTACGGGGTGATCTGGCGGTCCTGGGCCGGCC 1071709 29 100.0 32 NNNNNNNNNN ............................. TACGCGTGAGAGCTGGCCCGCCGCCTGCGAGG 1071770 29 100.0 32 NNNNNNNNNN ........T.................... TGGCCGATCCCCCAGCGCACCCCCGAGCAGAT 1071831 29 100.0 32 NNNNNNNNNN ............................. TACGCCGCGCCCGTGGCAAACGTGGTCGCCAT 1071892 29 100.0 32 NNNNNNNNNN ............................. GCGGACGAGATGATGTTCGCGCCTCACAAGGC 1071953 29 100.0 32 NNNNNNNNNN .....................A....... ACTCTACGGAGGTCGATGACCTGTCCACCCAA 1072014 29 100.0 1 NNNNNNNNNN .........................A..T NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 127 29 32 GTGCTCCCCGCGCAGGCGGGGGTGATCCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [23,1313] Score: 0.18/0.18 # # Final direction: F [0.78,0.55 Confidence: LOW] >NC_013510 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1053455 28 100.0 33 ACCCCAGCCC ............................ GAGCGCACATCATCCATGCTGTCGCCGTAAGCC 1053516 28 100.0 33 GCCGTAAGCC ............................ GGGAAGCGGGAGAGGTACTCATCAAGGTGCTCC 1053577 28 100.0 33 AAGGTGCTCC ............................ TGTCTGGCCGACGCCGAAGACTTCCTCGGCCAC 1053638 28 100.0 33 CCTCGGCCAC ............................ GCCTCCTCGCGGGCCTCGGCGGCCCGCAGCGCC 1053699 28 100.0 33 CCGCAGCGCC ............................ GACGTAGAGAGGGGGCTGGACATGTGGGCGAAG 1053760 28 100.0 33 GTGGGCGAAG ............................ CGCACCCACGCCTGCACATCCAGACGGCGCACC 1053821 28 100.0 33 ACGGCGCACC ............................ TGACCGGGCGGGGCGACGGCCTGGGTGGCCTGA 1053882 28 100.0 33 GGTGGCCTGA ............................ CTCGCGCCCCACACCGACGGCCAGGCAGACCCC 1053943 28 100.0 33 GGCAGACCCC ............................ AACGCTCGCCGCAGGGCGTGCACCTCGGCGGCC 1054004 28 100.0 34 CTCGGCGGCC ............................ ACCGAGGCTCAATTCAAGCGGTTCACTCGCACCT 1054066 28 100.0 33 ACTCGCACCT ............................ GAAGAAGACGAAGGGTGAGGGCTGATGCCCACC 1054127 28 100.0 33 GATGCCCACC ............................ GGCGACCCGTCGGACGCCTCCGCCCCCTCCGTC 1054188 28 100.0 33 CCCCTCCGTC ............................ CAACCTTTCGAAGTGCGCCTGGTTGTCGCCGCC 1054249 28 100.0 33 TGTCGCCGCC ............................ CGTAGGGGCCGGACAGGTTGCTCGGGTCGAACC 1054310 28 100.0 33 GGGTCGAACC ............................ TCGTACTGCTCCTCGCCCAGCATGGCCTGGGCC 1054371 28 100.0 33 GGCCTGGGCC ............................ CCGGCGTCCAGCAGCCCGACCAGGGCCGTCCCC 1054432 28 100.0 33 GGCCGTCCCC ............................ GATGTCTACGTCGGTCAGCGGCCCAAACCCTAC 1054493 28 100.0 CAAACCCTAC ............................ CCCTTGCTGA ========== ====== ====== ====== ========== ============================ 18 28 33 GGACCACCCCCGCCTGCGCGGGGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [4,1] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [25.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [3916,220] Score: 0.18/0.18 # # Final direction: R [0.55,0.64 Confidence: LOW] >NC_013510 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2438492 30 100.0 37 TTACCCTGGG .............................. CTTGAACTTGGGGCGCGTCTGGATGCCGTAGGGCCGG 2438559 30 100.0 37 GTAGGGCCGG .............................. ACGAAACCGCCGGAGCTACCGCGGCCACCCATGTCAG 2438626 30 100.0 37 CCCATGTCAG .............................. ACATGCCGCGAATCGAGCCGCGGCAGATCCAGTTCTA 2438693 30 100.0 TCCAGTTCTA .............................. CCGTCCTCACC ========== ====== ====== ====== ========== ============================== 4 30 37 GTCCTCATCACCCCTCAGAGGGATCGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [7,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [36.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [588,238] Score: 0.18/0.18 # # Final direction: F [0.82,0.37 Confidence: MEDIUM] >NC_013510 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3127183 29 100.0 32 CAGCTTCGTC ............................. CGCCGCCGTCACAAGCCGATTCCCTTCATCGG 3127244 29 100.0 32 CCTTCATCGG ............................. TTTCTTCGGATCGATCTTGCCGACGTTCGGGA 3127305 29 100.0 32 ACGTTCGGGA ............................. GGCGTGGCCACGACGCGTTTCGGGTTGCAGTG 3127366 29 100.0 32 GGTTGCAGTG ............................. ACGCCCAGAGCCGTGGAGGTCGTGCCCAGCGA 3127427 29 100.0 32 TGCCCAGCGA ............................. AAGCACCTGACCATCGAAGACCTGGCCGAACG 3127488 29 100.0 32 TGGCCGAACG ............................. CTCCTCGGCGCGGGAGGTGAGCCCCCGCAGCA 3127549 29 100.0 33 CCCCGCAGCA ............................. GTGTCGCGGCCGGTGAAAGCCGCGTCCAGGGTG 3127611 29 100.0 32 GTCCAGGGTG ............................. TGACACGCCAAGCTCACGGCCGTGATCGCCGA 3127672 29 100.0 32 TGATCGCCGA ............................. GAGTTCGGTCAGGTCGTCCGCTCGGCCATCGG 3127733 29 100.0 32 CGGCCATCGG ............................. TTGACCACGTCGGCGCGAGCGACCTCCCCTCC 3127794 29 100.0 32 CCTCCCCTCC ............................. TTGATCTGGCGGGTCTGGGCGTTCAAGTGGCC 3127855 29 100.0 32 TCAAGTGGCC ............................. CGGATTCTGATGACCGCCATTGAGGACGTCGC 3127916 29 100.0 32 AGGACGTCGC ............................. CTGGATCGGCATCCAAATTGCCATCAAGGCAG 3127977 29 100.0 ATCAAGGCAG ............................. ACTGATTGAC ========== ====== ====== ====== ========== ============================= 14 29 32 GGGATCATCCCCGCGTGCGCGGGGAGCAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [4,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [26.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [488,250] Score: 0/0.18 # # Final direction: F [0.37,0.27 Confidence: LOW] >NC_013510 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 275374 30 100.0 37 CCGAGATCGC .............................. AGCACGGGACGGTGGGCTGGTGGGCGGCGTTCGGGGT 275441 30 100.0 34 CGTTCGGGGT .............................. GGCGGGCTCGTGCCGCCGCCGAGCAGGCGCTTGC 275505 30 100.0 34 AGGCGCTTGC .............................. ACCGTCATCCGCGCCTGACCCCCACCAGCACGAG 275569 30 100.0 CCAGCACGAG .............................. CCCAGGGTAAA ========== ====== ====== ====== ========== ============================== 4 30 35 GTTGCGATCCCTCTGAGGGGTGATGAGGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [36.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [268,796] Score: 0.18/0.18 # # Final direction: F [0.64,0.55 Confidence: LOW] >NC_013510 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3137911 29 100.0 32 CCCGACAGGG ............................. GTCGGGTCCGCGGCTGCACTGGGCGCGCTCTG 3137972 29 100.0 32 GCGCGCTCTG ............................. GCGGCAGGGATACCTCGCGACCTGCCGAACTT 3138033 29 100.0 32 TGCCGAACTT ............................. TTTGACGCTGCGCACTGCGGTGATGATCGGCA 3138094 29 100.0 32 ATGATCGGCA ............................. TCCGGTGTCGGCCACATGGCCGGCACCCTGCT 3138155 29 100.0 32 GCACCCTGCT ............................. CGGGAGCGCGAACATACCATCAGACTTTTGTA 3138216 29 100.0 32 GACTTTTGTA ............................. GATCGTCTTATCGCGCCGATCCGGCAGACCCC 3138277 29 100.0 32 GGCAGACCCC ............................. CCTCCGTGCGCTGCGCGACCGCCTTGCCGAAG 3138338 29 100.0 32 CTTGCCGAAG ............................. GGTTGTGAATTCAACTAATGGAGAACGGGCCG 3138399 29 100.0 32 GAACGGGCCG ............................. AGGTCGTGCTCGAGCACGGCGGCCTGCAGCTC 3138460 29 100.0 32 CCTGCAGCTC ............................. CGCACCCCCTGGAGAAAGCCACCCAAAGCCTG 3138521 29 100.0 32 CCAAAGCCTG ............................. AGTTCGCGAACCTCGCCAAGGCGTCCTGACCC 3138582 29 100.0 32 GTCCTGACCC ............................. CCGCTGCTCCACAGCCGTCCACCAGGCGTGGG 3138643 29 100.0 32 CAGGCGTGGG ............................. ACCGGTGACCGTCCACGCCAAGCCTGCCCGCT 3138704 29 100.0 32 CCTGCCCGCT ............................. GGCTCAAGCCCGCTCAGGGAGGCCCAGCGGCG 3138765 29 100.0 32 CCCAGCGGCG ............................. GGCCACCAGGTCGTCTACACGCCGGCCGCGCG 3138826 29 100.0 CGGCCGCGCG ............................. ATCGAGCCCAGCCCACCGGCGCGGCCGCCGAGCTGCTCCCCGCGCACGCGGGGATGGTCTCCCTCGCTGCGTGTACTCGCGCTCGCTCACTGCCTGCTCCCCGCGCACGCGGGGATGGTCCCCCGTAGATACGGCCGACGGTGGCCTCACGCAGCTGCTCCCCGCGCACGCGGGGATGGTCCCGCGGGCTGGGACGGCATGGGTAGGCCTCGGAACTGCTCCCCGCGCACGCGGGGATGGTCCCGGGTGGTCCGGATGGCGGTACAGCGAGCAGTCCTGCTCCCCGCGCACGCGGGGATGGTCCCAGTTCGGCCTCGACCCAGGCCAGCCATGCTTCCTGCTCCCCGCGCACGCGGGGATGGTCCACGATGCCTCTCCCCGCGCCCATGACTGCGGTTCTGCTCCCCGCGCACGCGGGGATGGTCCCTTCGCGCGGTGATCAAGGCCGCGGTAGAGTCCCTGCTCCCCGCGCACGCGGGGATGGTCCCCCGGACAGCGGACGGTACGCGGCTCGGTCCATCTGCTCCCCGCGCACGCGGGGATGGTCCCTGGCGAGCGTGCGGTTCGGCTCCCACACGTAGCTGCTCCCCGCGCACGCGGGGATGGTCCCGATCCGGTTGCCCGGGTAGATGATCTCCAGGCCTGCTCCCCGCGCACGCGGGGATGGTCCCAGGTCGTCGGTGTCTCCGTAGTCGACGACGATCTGCTCCCCGCGCACGCGGGGATGGTCCCGCGTGGGCGCGTGCCGCGTCTGTTTTGCCGTACTGCTCCCCGCGCACGCGGGGATGGTCCCCCAGGCCCGGGCAGCACGATCCCGTCCCGCTGCTGCTCCCCGCGCACGCGGGGATGGTCCCCTCGTTCACTCGGCTTCGTGAGCTCTTCAACGCTGCTCCCCGCGCACGCGGGGATGGTCCTTCGACGGGGGTGCCGGACGGCCAGGCGGCCGGCTGCTCCCCGCGCACGCGGAGATGGTCCCGGGATGTACGCGATCAGGATCACGACGGCGCC ========== ====== ====== ====== ========== ============================= 16 29 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [26.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [571,1405] Score: 0.18/0.18 # # Final direction: R [0.27,0.55 Confidence: MEDIUM] >NC_013510 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =========================== ====== 3138887 27 100.0 34 GGCCGCCGAG ........................... TCCCTCGCTGCGTGTACTCGCGCTCGCTCACTGC 3138948 27 100.0 34 CGCTCACTGC ........................... CCCCGTAGATACGGCCGACGGTGGCCTCACGCAG 3139009 27 100.0 34 CCTCACGCAG ........................... CCGCGGGCTGGGACGGCATGGGTAGGCCTCGGAA 3139070 27 100.0 34 GGCCTCGGAA ........................... CCGGGTGGTCCGGATGGCGGTACAGCGAGCAGTC 3139131 27 100.0 34 GCGAGCAGTC ........................... CCAGTTCGGCCTCGACCCAGGCCAGCCATGCTTC 3139192 27 100.0 34 GCCATGCTTC ........................... CACGATGCCTCTCCCCGCGCCCATGACTGCGGTT 3139253 27 100.0 34 GACTGCGGTT ........................... CCTTCGCGCGGTGATCAAGGCCGCGGTAGAGTCC 3139314 27 100.0 34 GGTAGAGTCC ........................... CCCCGGACAGCGGACGGTACGCGGCTCGGTCCAT 3139375 27 100.0 34 CTCGGTCCAT ........................... CCTGGCGAGCGTGCGGTTCGGCTCCCACACGTAG 3139436 27 100.0 34 CCACACGTAG ........................... CCGATCCGGTTGCCCGGGTAGATGATCTCCAGGC 3139497 27 100.0 34 ATCTCCAGGC ........................... CCAGGTCGTCGGTGTCTCCGTAGTCGACGACGAT 3139558 27 100.0 34 CGACGACGAT ........................... CCGCGTGGGCGCGTGCCGCGTCTGTTTTGCCGTA 3139619 27 100.0 34 TTTTGCCGTA ........................... CCCCAGGCCCGGGCAGCACGATCCCGTCCCGCTG 3139680 27 100.0 34 CGTCCCGCTG ........................... CCCTCGTTCACTCGGCTTCGTGAGCTCTTCAACG 3139741 27 100.0 34 CTCTTCAACG ........................... CTTCGACGGGGGTGCCGGACGGCCAGGCGGCCGG 3139802 27 96.3 34 AGGCGGCCGG ...................A....... CCGGGATGTACGCGATCAGGATCACGACGGCGCC 3139863 27 92.6 CGACGGCGCC ......................C...T ACAGCGCGA ========== ====== ====== ====== ========== =========================== 17 27 34 CTGCTCCCCGCGCACGCGGGGATGGTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [20.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1547,370] Score: 0.18/0.18 # # Final direction: R [0.59,0.64 Confidence: LOW] >NC_013510 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 340045 31 100.0 34 ACCGGCATGA ............................... ATGTGGACGGCGTGGGTGAGCGGCCGGCCGTCCA 340110 31 100.0 37 CGGCCGTCCA ............................... TGGTCATGTGTCTCCCTGTTGATTTGTCAAGACCTGG 340178 31 100.0 35 CAAGACCTGG ............................... CTGGATTCCCCTTTGGCCTGCCACTTCAGTTCTTC 340244 31 100.0 TCAGTTCTTC ............................... TCCAGAGTA ========== ====== ====== ====== ========== =============================== 4 31 35 GGTTGCGATCCCTCTGAGGGGTGATGAGGGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [1153,673] Score: 0/0.18 # # Final direction: NA [0.37,0.37 Confidence: NA] >NC_013511 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 313131 23 100.0 34 NNNNNNNNNN ....................... ACCTGAAGTTAAACCAGAAGATCCTAAGAAACCA 313188 23 100.0 22 NNNNNNNNNN ....................... ACCTGAAGATCCAAAGAAGCCT 313233 23 100.0 1 NNNNNNNNNN ....................... NNNNNNNNNN ========== ====== ====== ====== ========== ======================= 3 23 28 GAAGGTGAAAAACCAGGAACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.52%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [329,1225] Score: 0.18/0.18 # # Final direction: R [0,0.45 Confidence: MEDIUM] >NC_013512 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 900505 30 100.0 36 NNNNNNNNNN .............................. CGTTTAATCAATCTCAAAAGACACTTAAAAAATATA 900571 30 100.0 34 NNNNNNNNNN .............................. TTTTTTGGCACTTCTTGGCTCTCTTTTGGCTTTT 900635 30 100.0 35 NNNNNNNNNN .............................. AATTTAGAAAGTTCAATGTTTTTTACTGCAACTGC 900700 30 100.0 34 NNNNNNNNNN .............................. TAAGAGCTTTATCTCTTTTTTCTTTAGTTGTAGG 900764 30 100.0 35 NNNNNNNNNN .............................. AGATATGCAACCGATGGCGCAAGTGCTTTTGATCT 900829 30 100.0 36 NNNNNNNNNN .............................. TGAAATGAAATTTGACCGCCCAACTTATGTGCCTGT 900895 30 100.0 35 NNNNNNNNNN .............................. CCTATTCACAATGGGACTTAACAGTAAATAGCACA 900960 30 100.0 35 NNNNNNNNNN .............................. CGCCCAAAAGCTAATTGATACTTAGACGCTTTCTT 901025 30 100.0 36 NNNNNNNNNN .............................. ATCCTAAAAAAAGCATTTATGCTAAAGGGTGGCGCA 901091 30 100.0 36 NNNNNNNNNN .............................. AACGACAAACACAAAATTCATCTACTAGGCGGAAAG 901157 30 100.0 33 NNNNNNNNNN .............................. CTCTTCGAGCTTGACCCGTGAGCTTATCGTCTC 901220 30 100.0 34 NNNNNNNNNN .............................. ACGGAAGCAAAAGCGTTTCCACGCTTTTGTGTTT 901284 30 100.0 34 NNNNNNNNNN .............................. TGTCGTAGCTTGCTCCGCTTGTCAATGGAATTTC 901348 30 100.0 36 NNNNNNNNNN .............................. AAAAATGAGAACGGTTGAGAGTATAATAAATGATAA 901414 30 100.0 36 NNNNNNNNNN .............................. CACAGAAGAGTATAAAAAGCCTATAAAATTATTATT 901480 30 100.0 36 NNNNNNNNNN .............................. TATCAGGGAACTCTTTTTCTTTTTTAGAAAAACATA 901546 30 100.0 37 NNNNNNNNNN .............................. TGTAACAATAATTATGCATTGTACTGTGTGTGAAATT 901613 30 100.0 36 NNNNNNNNNN .............................. AACAGTAGGCGTTATTATAGGCTATTTAATCGTTTA 901679 30 100.0 35 NNNNNNNNNN .............................. CATAAAGACAAAAAGGGGATAAGATGGAAGAGATT 901744 30 100.0 35 NNNNNNNNNN .............................. TACCTAAACTAGGTGTTGAAAAAACCAACAGCTAA 901809 30 100.0 34 NNNNNNNNNN .............................. AAAATAGTTTGAAATTTCTCCAAGCTAGTGTTCT 901873 30 100.0 36 NNNNNNNNNN .............................. TGACCCACCAAAGTTTTTTAATGATGGCACAAAGCA 901939 30 100.0 37 NNNNNNNNNN .............................. TGCTATAAAACTCTTCAACACCTTTAGCGATTGACTG 902006 30 100.0 34 NNNNNNNNNN .............................. CGGTGGAGAGCTTGCAGATGTTAGGAGGCAATCA 902070 30 100.0 34 NNNNNNNNNN .............................. CGGTGGAGAGCTTGCAGATGTTAGGAGGCAATCA 902134 30 100.0 36 NNNNNNNNNN .............................. ATGATTTGTGTCTCTTTTTCTGTCTCAAATTGTGAA 902200 30 100.0 36 NNNNNNNNNN .............................. CGGGTGCAAAAGCTCTTTTGACGTTGACGTGGTTTT 902266 30 100.0 35 NNNNNNNNNN .............................. TTGCTTCTTTTGTCATCTCTACCCCTTTAAAATTT 902331 30 100.0 34 NNNNNNNNNN .............................. TGATAAGGTAACAGAAATCGTACGTCCTCACTTT 902395 30 100.0 36 NNNNNNNNNN .............................. AGCATTTGTAAGAAGTAGGTAAGCACTTGGCGGTCG 902461 30 100.0 37 NNNNNNNNNN .............................. CCGATAGAATTATTATGATTAGTGAAGATGGAACTAT 902528 30 100.0 34 NNNNNNNNNN .............................. CTTTAAAGATTTTATAAGCCCGTTTTTATAGTTC 902592 30 100.0 36 NNNNNNNNNN .............................. AAACAATGGAGCACTATAAAGTTAAAATAAGTGTTT 902658 30 100.0 35 NNNNNNNNNN .............................. TTGATTGAGAAAAACTAACTTCCAACCGTCCAAAG 902723 30 100.0 35 NNNNNNNNNN .............................. TATCCTGAGCCAAACGATAATTTAAAATCAATCTG 902788 30 100.0 37 NNNNNNNNNN .............................. CAAAATAGTCTCCTTTTCTTTAAAATTGATAATGAAA 902855 30 100.0 35 NNNNNNNNNN .............................. CTAGATGCGTTACATGTAAACGAAACAGAGAATGG 902920 30 100.0 36 NNNNNNNNNN .............................. AAGGATGAAGAAGTTAAAGAAGTCATGCTTGTTAGG 902986 30 100.0 36 NNNNNNNNNN .............................. TCAGATACCTTAATGGTTTCGTCCGAAATTTGCATC 903052 30 100.0 34 NNNNNNNNNN .............................. CATCAAGCACTGTTTCGCTTGATGATATAGATAT 903116 30 100.0 36 NNNNNNNNNN .............................. ACTCATAAAGCTCTTTTGGTAAATCATCTCTCATTC 903182 30 100.0 35 NNNNNNNNNN .............................. CAGAAGGGGATAATGTCGTCCGTGATGTCAATATC 903247 30 100.0 34 NNNNNNNNNN .............................. GATGGATAGATACAAAGCAAACAGTACAACACAT 903311 30 100.0 36 NNNNNNNNNN .............................. CAGTACAGCACCGAAGGAAGCAGTGCGTTTGACCTG 903377 30 100.0 35 NNNNNNNNNN .............................. AGTTTCATGCCTTGGTATGGTGACATTCTTACTAC 903442 30 100.0 35 NNNNNNNNNN .............................. AAAAAAGCCAAAAAAGAGCCAAAAAGTGCCAAAAA 903507 30 100.0 36 NNNNNNNNNN .............................. AGGCAAAACACGGTCTTAACGCCTCGCCCCACCCTT 903573 30 100.0 36 NNNNNNNNNN .............................. AAAAAGGAACTGACAATGCAAATGGTGCAAAAACTA 903639 30 100.0 36 NNNNNNNNNN .............................. ATTTTAATGGATGATGATAAGCTCTTATACTATTTT 903705 30 100.0 36 NNNNNNNNNN .............................. CATAGACGAAAAGTCTCTAAAACTAAGATGAGAAAT 903771 30 100.0 35 NNNNNNNNNN .............................. AAAAAAGAAACCTAGCACAAGAACAGACCAGACCC 903836 30 100.0 36 NNNNNNNNNN .............................. CAGTTCGAGTATTTAGAAAGTGTGGAAAAAATTATT 903902 30 100.0 36 NNNNNNNNNN .............................. ATTTTGATGGATGATGATAAGCTCTTATACTATTTT 903968 30 100.0 36 NNNNNNNNNN .............................. TCAGCTAATAGTATTCAGGTTATGTATATTATCGAA 904034 30 100.0 34 NNNNNNNNNN .............................. TTAGTAGATGGAAGAATAGAAAATACATTAGAAG 904098 30 100.0 35 NNNNNNNNNN .............................. AAAAAAGAAACCTAGTACAAGAACAGACCAGACCG 904163 30 100.0 36 NNNNNNNNNN .............................. TATATGGGAAGCAAAAGAAAATTATCTTCTAAAATT 904229 30 100.0 35 NNNNNNNNNN .............................. CCACAATAGGATAAAAAATGGATTTATACGTAAAA 904294 30 100.0 35 NNNNNNNNNN .............................. AATATCCTCTGTTTTCCAGTCGTAAATTGGGTAAA 904359 30 100.0 36 NNNNNNNNNN .............................. TATATCAGTAATAGGTACTACAATGGCATCAGTTGG 904425 30 100.0 36 NNNNNNNNNN .............................. TAAGTTCAATATGACATAAGTCTTCAGCATACTTTG 904491 30 100.0 34 NNNNNNNNNN .............................. TTTAGCCCTCATTTAAGGGCTTTATCTTTTCAAA 904555 30 100.0 36 NNNNNNNNNN .............................. TATTGCTGAAATATTAGTTAAAGCAAATGAAGAAGA 904621 30 100.0 36 NNNNNNNNNN .............................. ATGGAAAACGCAGGTAGAAAAAAAAATAAAATGACA 904687 30 100.0 35 NNNNNNNNNN .............................. TTATTTAGAAGATACGATTAGAGATTTACATCAAG 904752 30 100.0 34 NNNNNNNNNN .............................. AGCGACCCGACTCTTGTTACAATATCTGCGATAT 904816 30 100.0 36 NNNNNNNNNN .............................. CTGTTGATAATGCAATATCAGCCTGCGAATAGGTAA 904882 30 100.0 36 NNNNNNNNNN .............................. TACATCAGGATTTGACATATACTTGATACCCTCTGT 904948 30 100.0 36 NNNNNNNNNN .............................. ATTAATGGGTGTGCTGCAATCCATTTCACGGAGTTT 905014 30 100.0 37 NNNNNNNNNN .............................. CTGGTAGCGTTCAACTACACACACACAAATAGCAATT 905081 30 100.0 37 NNNNNNNNNN .............................. CTGGTAGCGTTCAACTACACACACACAAATAGCAATT 905148 30 100.0 36 NNNNNNNNNN .............................. TTGAGCTTTTTTAATCTATGAAATTCAGGAGGACAT 905214 30 100.0 35 NNNNNNNNNN .............................. CAACACCAAAAATGGCACTTATACGTTTCCTAATG 905279 30 100.0 35 NNNNNNNNNN .............................. ATGCTTTCAATGTCAAGCTTCATTTTAAGCTACTT 905344 30 100.0 36 NNNNNNNNNN .............................. AGTATATCGCTTTTGGTCGTTTGCATCCCGATTGAA 905410 30 100.0 36 NNNNNNNNNN .............................. ATACGTCAAAGAGCCTTATCAAAACATCGAATCTCA 905476 30 100.0 37 NNNNNNNNNN .............................. CAACAACCCCCTAAAGTTTCTTAACTTTCTTCAAATC 905543 30 100.0 37 NNNNNNNNNN .............................. TGACATAAACGCCATCTTGCAATGCTTTTTTAATAGA 905610 30 100.0 36 NNNNNNNNNN .............................. AAGGTACTTTCGCCTCTTCTTGAGGCGCTTGAGGCG 905676 30 100.0 36 NNNNNNNNNN .............................. GTTAAAAACCATCTTCCCATTATTATTAAATTTTGG 905742 30 100.0 39 NNNNNNNNNN .............................. AAGTAATTTACGCATAGTAACTAAGTAGTCAGGTATCTT 905811 30 100.0 35 NNNNNNNNNN .............................. GTCTATAATAACAATCGCTCCGCTAGTGGCTTTTG 905876 30 100.0 37 NNNNNNNNNN .............................. TGTGGACAGAGCGTTTTGCAGTCGAAGGCATAAAGGT 905943 30 100.0 36 NNNNNNNNNN .............................. AGTTCACTTTCAACATCAATGCTAAAAGAAGCGTTT 906009 30 100.0 34 NNNNNNNNNN .............................. TACTTTTCAGGTGTATCGATGTAAAGGATACGTA 906073 30 100.0 34 NNNNNNNNNN .............................. ATCTTTAGAGATGGGCGCTACTTACATGTTAAAA 906137 30 100.0 37 NNNNNNNNNN .............................. AACGCTGGGGGCTTCTCTATGGAAGATTTTAACCGAA 906204 30 100.0 35 NNNNNNNNNN .............................. CGGCAAGAGTGGGATGTGATAATCTCTAACCCACC 906269 30 100.0 36 NNNNNNNNNN .............................. CGCAAATATTCTTCTACATGTAAAGAAAAATGGATC 906335 30 100.0 36 NNNNNNNNNN .............................. CACTATGATTCTTCAAAAGAGGTTTTTAGAATAGAG 906401 30 100.0 34 NNNNNNNNNN .............................. CCTATTGATGACTTCCTTTACCATCCCCTTTTTA 906465 30 100.0 36 NNNNNNNNNN .............................. AATGATGCGAAAATAGTTCTGATGACAATAGACACA 906531 30 100.0 35 NNNNNNNNNN .............................. AATTAATTAAAGGTTCACACCCAAACAAATCAATA 906596 30 100.0 35 NNNNNNNNNN .............................. GTTGGAAGCGTGACAGGTAATTGGAGAATAATTTC 906661 30 100.0 34 NNNNNNNNNN .............................. ATGCTTTTAGCTTCTTTTTATGTAGGCAAATACA 906725 30 100.0 36 NNNNNNNNNN .............................. TGTCAAAATCAAATCATCTTTATCAAAATAATTTTG 906791 30 100.0 35 NNNNNNNNNN .............................. CGCCAACACGTCAGGGAATTATGCCCACGCCAACA 906856 30 100.0 37 NNNNNNNNNN .............................. TGTCCGTACCCGAACCATTAGAATCTTTAATAGCGTT 906923 30 100.0 36 NNNNNNNNNN .............................. GACGAAGACACGGTAAAGGTTTTGCGATTCGATGTT 906989 30 100.0 37 NNNNNNNNNN .............................. CTCTCAACCACCGTCACAGGGATTTTTTTACCGTTAA 907056 30 100.0 34 NNNNNNNNNN .............................. TTTGGAATAATTGGCTTAATCCACCCATGACCTG 907120 30 100.0 36 NNNNNNNNNN .............................. TTGTTTAAAAGCTTAGCCCCATTGCTGAGGCTTAAC 907186 30 100.0 36 NNNNNNNNNN .............................. CTTGGAAGCGATAGGACTTAAAAATAAAATGCGCCT 907252 30 100.0 34 NNNNNNNNNN .............................. AAGAACGGTAAGCCTAGAACGCTTATGATGTTGA 907316 30 100.0 34 NNNNNNNNNN .............................. AAAAATGGCTATTTCCTTACATGTAAGGCTTCTG 907380 30 100.0 35 NNNNNNNNNN .............................. AACAATAGAGCGAGAGACATTTTTGTCATTCTCTT 907445 30 100.0 36 NNNNNNNNNN .............................. ATTATTTTATTAACCTTTACATGTAGATGGTTCGCA 907511 30 100.0 38 NNNNNNNNNN .............................. GAAATTGATGATGGTGATGAAGTTATATGTGATCCACA 907579 30 100.0 36 NNNNNNNNNN .............................. CTTTGGAAATACTACGGAGGCGGTAAGAAAATAAAA 907645 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 110 30 35 CTCGAACCGACACAAGATTTGTATTTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-2.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [166,899] Score: 0.18/0.18 # # Final direction: R [0,0.55 Confidence: HIGH] >NC_013510 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 995804 30 100.0 36 TTACCCTGGG .............................. CTGGCGAGCCGCGCCAACAGGTCCTCAGGGATGGGC 995870 30 100.0 35 AGGGATGGGC .............................. CAGTACCCGCAGCACGTCTCCGGCATGTCCGTCAC 995935 30 100.0 35 TGTCCGTCAC .............................. CCTGGCGGACCCAAGCAGCCGCGGTGCGCGCCCTG 996000 30 100.0 34 GCGCGCCCTG .............................. GCCTCTTGGCCCGGCCCGTGTCCGCCAGTGCCAC 996064 30 100.0 CCAGTGCCAC .............................. GGGTTCCTGGAGTCTTGGCAGAGCCCGGACCGGAGC ========== ====== ====== ====== ========== ============================== 5 30 35 GTCCTCATCACCCCTCGGAGGGATCGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [35.0-33.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [884,596] Score: 0/0.18 # # Final direction: NA [0.37,0.37 Confidence: NA] >NC_013510 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 420283 29 100.0 32 TAGTCGGCCA ............................. GCCACCAGCAGCTCCAGCGCGTCTCCGACCCG 420344 29 100.0 32 CTCCGACCCG ............................. GTGAGGTCGACCTCGGCCTGGACAGCATCCAG 420405 29 100.0 32 CAGCATCCAG ............................. GCAGCATCTTTGCCCGGGGTGCCGTCTGGGGC 420466 29 100.0 32 CGTCTGGGGC ............................. CTGGGGCTGTCACCTCGCAACGCGGATGATGC 420527 29 100.0 32 CGGATGATGC ............................. CGGCCCGCCCCGGGCGCATCGGGTGGCGGGCC 420588 29 100.0 32 GTGGCGGGCC ............................. GGCTCCTTCCGTATCGGAACGGCGGGTCAGGC 420649 29 100.0 32 CGGGTCAGGC ............................. GCCGCGTGGGCGGTCCGCGGAGCGCAGGAATG 420710 29 100.0 32 CGCAGGAATG ............................. GGCCCCCTTGCCCCACAGCACTGCAAAACATT 420771 29 100.0 32 GCAAAACATT ............................. AACCACGGCCGCACCATCCCCGCCTACGACCT 420832 29 100.0 32 CCTACGACCT ............................. ACGTACACCGGTGCCCGCCGGGACAGCCCGGC 420893 29 100.0 32 ACAGCCCGGC ............................. CCGCGATCGAAGTCGGCGAGCGCGTCCCGAGC 420954 29 100.0 32 CGTCCCGAGC ............................. CCTTGCGAGCCGTGCGCGGATCTCGGCGGCCC 421015 29 100.0 32 TCGGCGGCCC ............................. CCCTCTGGGACCACCACGGTCCCGACGACGAC 421076 29 100.0 32 CGACGACGAC ............................. CCCCCCGGGTATGCACGCACGGTCGTGTAACG 421137 29 100.0 32 TCGTGTAACG ............................. CGCATTCCATCGCAGACCGAGCTGGAGCAGGA 421198 29 100.0 TGGAGCAGGA ............................. ACTGGCTGA ========== ====== ====== ====== ========== ============================= 16 29 32 GGGACCATCCCCGCGTGCGCGGGGAGCAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [4,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1149,209] Score: 0.18/0.18 # # Final direction: F [0.55,0.27 Confidence: MEDIUM] >NC_013515 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1154580 36 100.0 28 NNNNNNNNNN ..CAA.A..C...T.......GT............. TCAGATTTTTAAGCCTTTTTTTAAAAAA 1154644 36 100.0 30 NNNNNNNNNN .................................... CACTGTCACCTTCATAAAAGGTTGTTAGTA 1154710 36 100.0 30 NNNNNNNNNN .................................... TAGTCCAGATATATTTGTCAAATGCAGAAT 1154776 36 100.0 30 NNNNNNNNNN .................................... TAGTCCAGATATATTTGTCAAATGCAGAAT 1154842 36 100.0 30 NNNNNNNNNN .................................... TAGTCCAGATATATTTGTCAAATGCAGAAT 1154908 36 100.0 30 NNNNNNNNNN .................................... TCTTATCTCTTAAAATATTTTCAGACACTA 1154974 36 100.0 30 NNNNNNNNNN .................................... ATTGTTTAATTCTTTCCATGTTATTTTGTA 1155040 36 100.0 30 NNNNNNNNNN .................................... AATAACTTAAACGAATATGACAGAAAAGCG 1155106 36 100.0 30 NNNNNNNNNN .................................... CGTTCGGTGAAACTCCAAATCTCATTTTTA 1155172 36 100.0 30 NNNNNNNNNN .................................... TCACAAAACAAATGGATTTTCAAAATTTAA 1155238 36 100.0 30 NNNNNNNNNN ...............................T.... CTGAGTTGCATTATTCTAGCCGTATTAAAA 1155304 36 100.0 30 NNNNNNNNNN .................................... TTACCAATAAACCTGTTTCTTTTCCAAATT 1155370 36 100.0 30 NNNNNNNNNN .................................... GTTTAGAAAATGCTAAAATTTTAAGATATG 1155436 36 100.0 30 NNNNNNNNNN .................................... ATGTGTCATGTTCACTTTTGCTTTCACTTT 1155502 36 100.0 30 NNNNNNNNNN .................................... TAGGGGCTGTTTGTGTTATCGGCGTTGTAT 1155568 36 100.0 30 NNNNNNNNNN .................................... TTAATTTTAAATTTTTAAGTTTATTTAGTG 1155634 36 100.0 30 NNNNNNNNNN .................................... CTTTCTAACAATAAAATCTTCATTTTTTGA 1155700 36 100.0 30 NNNNNNNNNN .................................... ATATGATTGGAAAGGTATTCTATGGAGTTG 1155766 36 100.0 30 NNNNNNNNNN .................................... TTTTTATCATTTTATTATTTAAGATGTTTG 1155832 36 100.0 30 NNNNNNNNNN .................................... CTTCTAACAATACTAATTCTTTATTATCCC 1155898 36 100.0 30 NNNNNNNNNN .................................... TTCTTCTGTATCCCAGTTTATACTTTTTGA 1155964 36 100.0 30 NNNNNNNNNN .................................... CCTTCTTTAGTTCATTGCCTTCTTTATCAA 1156030 36 100.0 30 NNNNNNNNNN .................................... ATCTTAAAGACCCACCATATCTTTTAACTG 1156096 36 100.0 30 NNNNNNNNNN .................................... ATTAAAAAGAAACAAGAAGCATTAGAAAAA 1156162 36 100.0 30 NNNNNNNNNN .................................... ATTGTTTAATTCTTTCCATGTTATTTTGTA 1156228 36 100.0 30 NNNNNNNNNN .................................... TTTTCCTTTTCATAATTCAGTTCATAAACA 1156294 36 100.0 30 NNNNNNNNNN .................................... TCAACTCAAGTTTTTTTATATTATCATTAT 1156360 36 100.0 30 NNNNNNNNNN .................................... TAAAACTAGGATTTAATTATTATTTTTAAA 1156426 36 100.0 30 NNNNNNNNNN .................................... CTTTTTTTAATCCATTTCCCTCTTTATCAA 1156492 36 100.0 30 NNNNNNNNNN .................................... TTCTTCCGTGTCCCAATTTATGCTTTTTGA 1156558 36 100.0 30 NNNNNNNNNN .................................... CTTTCTTTAAGATGTTTCCCTCTTTATCAA 1156624 36 100.0 30 NNNNNNNNNN .................................... TTAAAGTCGTGCAACAAATTGTTTATAAAT 1156690 36 100.0 30 NNNNNNNNNN .................................... TCGTAAAAAGATATTAATAAATTCTTCTTT 1156756 36 100.0 30 NNNNNNNNNN .................................... GTCTCGCGGGGGCGACGGCGCAACAAGGAA 1156822 36 100.0 30 NNNNNNNNNN .................................... AATTTAACTCATATTTATAAATTGGTACAT 1156888 36 100.0 30 NNNNNNNNNN .................................... ATGAATTAACATGAATTAAATCTTTTGATA 1156954 36 100.0 30 NNNNNNNNNN .................................... AATCGATCAATCCTTTTCCCCAAATTTCTG 1157020 36 100.0 30 NNNNNNNNNN .................................... ATTCGGTTTCATACAAATCCCGCTCTTTTT 1157086 36 100.0 30 NNNNNNNNNN .................................... AAGTAGTGTCGTGTTTATCTCTTTCCTTTT 1157152 36 100.0 30 NNNNNNNNNN .................................... CGTTATGAAACTTTCGTTTAATTGAACATT 1157218 36 100.0 30 NNNNNNNNNN .................................... AATTAAAAAAATATGAGTTCGAAAAAAAAT 1157284 36 100.0 30 NNNNNNNNNN .................................... TTTGTGTCATAGTCCCGTTTATTGTCATCT 1157350 36 100.0 30 NNNNNNNNNN .................................... TCAGCTCATGCTCCAGCCTCAAAGACCATT 1157416 36 100.0 30 NNNNNNNNNN .................................... GTTTAGGCGGCGCGACAGCGCAACCAGGTA 1157482 36 100.0 30 NNNNNNNNNN .................................... TTAATTTTTATTGTTTTTCCTTCGATTTTT 1157548 36 100.0 30 NNNNNNNNNN .................................... TATATGTTAACGTCACAAACATACCTTTAC 1157614 36 100.0 30 NNNNNNNNNN .................................... TCTGCGTCATAGTCCCGTTTATTGTCATCT 1157680 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 48 36 29 CATTCACATTATTCAAATTTACCAAGAATCTGTATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.22%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis suggestion: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [123,87] Score: 0/0.18 # # Final direction: R [0,0.41 Confidence: MEDIUM] >NC_013517 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1415582 30 100.0 36 NNNNNNNNNN .............................. TTCTCTAGCTTTTGCAAATATTTTTTTCATTGTTGC 1415648 30 100.0 36 NNNNNNNNNN .............................. TCTTGTCATGGGAGCGTTTCAACTTGATTTTTACAG 1415714 30 100.0 34 NNNNNNNNNN .............................. TTTTCTAATTCTTCCGCAACTATTATAGTTTTAT 1415778 30 100.0 36 NNNNNNNNNN .............................. ATAGTTCCTTGCAGTATTGCAAATACAAGCAAGATT 1415844 30 100.0 36 NNNNNNNNNN .............................. TATAAAACAAAAGTAAAGCAATTAGCTGATCTGTTT 1415910 30 100.0 37 NNNNNNNNNN .............................. ATGTACTCTTCCCAGATTAGGCCAAAAGTTTTTTTAT 1415977 30 100.0 1 NNNNNNNNNN ........G........T.....GTA.T.C NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 7 30 35 CTATTAATATAACTATCCTAGAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:80.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [596,131] Score: 0.18/0.18 # # Final direction: F [0.86,0 Confidence: HIGH] >NC_013520 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 2061315 35 100.0 43 CACTAGACTG ................................... ATTGTAAAGATCAAGAAGGAACTTATTCCATATATTTCAGCAA 2061393 35 100.0 35 ATTTCAGCAA ................................... TAACTTATAATACTCCTAGATTGAATGCTATTAAA 2061463 35 100.0 43 TGCTATTAAA ................................... AAACCAAGTATTGCAACTCTTATTAAAAAAGATGAGTAAATAA 2061541 35 97.1 GAGTAAATAA ................A.................. CCTGTCTCTG ========== ====== ====== ====== ========== =================================== 4 35 40 GTTTCCGTCCCCATCAGGGGATTATTTAATTTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-9.80,-9.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [249,321] Score: 0/0.18 # # Final direction: F [1.05,0 Confidence: HIGH] >NC_013520 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 2061896 35 100.0 40 AAGCTTACTC ................................... AGGTGCAGATAGAAAATATCGTCGCCCTTGGAAGTATTAT 2061971 35 100.0 37 GAAGTATTAT ................................... TCTTCAATTTCAATACTGGAATTGATTTCTACTTCAC 2062043 35 100.0 39 TCTACTTCAC ................................... TGTAAAATCTTTACAAGATACCACTAAGACAGCGGTAAA 2062117 35 100.0 39 CAGCGGTAAA ................................... CGACAATATTGCAATGGATCAAGTTCGTAACGATGCAAT 2062191 35 100.0 41 ACGATGCAAT ................................... TGTCAAGAGAGGAGAATAATATGAACAGACAAAAAAAGAAT 2062267 35 100.0 39 AAAAAAGAAT ................................... TGAAGAGCAGTGAAAGTGTACAATCTGTTATGAAAGAAT 2062341 35 100.0 40 ATGAAAGAAT ................................... TTATTCAAAGTAATCGTTCTGTACAATCTATTAGTAATTA 2062416 35 100.0 TTAGTAATTA ................................... AGCAGGCCTCA ========== ====== ====== ====== ========== =================================== 8 35 39 GTTTCAATACCGTAAACGGTAAGTGCTGTTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:57.14%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [322,435] Score: 0/0.18 # # Final direction: R [0.64,4.5 Confidence: HIGH] >NC_013520 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 2079476 35 100.0 36 ACTCCCAATA ................................... TTTAGGATTTGTAATCGGATTCGAATTATTTCTAGC 2079547 35 100.0 35 TATTTCTAGC ................................... CCAAAGTAATTGTCATTTTGAAGTACAGCAATAAT 2079617 35 100.0 43 CAGCAATAAT ................................... GAAGCTGCAGACATGGCAATAGTAGAATATTCAACCCCTTCTA 2079695 35 100.0 35 ACCCCTTCTA ................................... TCTACATGATGCTGAAAATAAGAAAGCAGAACTAG 2079765 35 100.0 GCAGAACTAG ................................... AGCATACCTC ========== ====== ====== ====== ========== =================================== 5 35 37 GTTTCAATACCGTAAACGGTAAGAGCGGTTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.29%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [783,4120] Score: 0.18/0.18 # # Final direction: R [0.37,4.68 Confidence: HIGH] >NC_013520 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 2091496 35 100.0 40 NNNNNNNNNN AG.A..CATATCGT....A...AT...A....... CGCACTTAATGAAGCAAGAAGTTACCTTGAACGAAATGTC 2091571 35 100.0 36 NNNNNNNNNN ..........T......A.....T...A....... GGTCCGACTGCGAGCGGTCAGAAATCAATTTTAGGG 2091642 35 100.0 40 NNNNNNNNNN ................................... AAAAACTAATTGATGCGTGAAGCTGGCTCAACTCCGATAA 2091717 35 100.0 36 NNNNNNNNNN .......................T...A....... GAGAATTATTATGTGTGTTATCGCAGTTTATGAAGC 2091788 35 100.0 41 NNNNNNNNNN ................................... TCTGCAGCATTTGGCCATAAAAATAAAGCTATTGGTTTACA 2091864 35 100.0 37 NNNNNNNNNN .......................T........... TTGATGATGAAGGCGAATTCCATGAAGAAGGTGAAGA 2091936 35 100.0 40 NNNNNNNNNN ................................... TTGTATGTTACGATTATTTATTATAATGTTTATAAAGGAG 2092011 35 100.0 38 NNNNNNNNNN ................................... TAGCCAGCTTGATAATATTAATAATATTGATCTTATTG 2092084 35 100.0 38 NNNNNNNNNN ................................... TTAACATTTGATAATATTGTGCACCGCCATCAATACAA 2092157 35 100.0 38 NNNNNNNNNN ................................... CCTGTAAGTCACTATCATAAAGCACTAGGCGAATGGGT 2092230 35 100.0 38 NNNNNNNNNN ................................... CACGACTTTAATAATTATAGTCGTGACTAATTTATAGA 2092303 35 100.0 36 NNNNNNNNNN ................................... TTTGATGTTCTGATTTAGTAATAATATTCATATAAT 2092374 35 100.0 38 NNNNNNNNNN ................................... CACGACTTTAATAATTATAGTCGTGACTAATTTATAGA 2092447 35 100.0 36 NNNNNNNNNN ................................... TTTGATGTTCTGATTTAGTAATAATATTCATATAAT 2092518 35 100.0 1 NNNNNNNNNN ................................... NNNNNNNNNN ========== ====== ====== ====== ========== =================================== 15 35 38 GTTTCAATACCGTAAACGGTAAGCACTGTTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:57.14%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [818,2195] Score: 0.18/0.18 # # Final direction: R [0.37,5.09 Confidence: HIGH] >NC_013524 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1142249 29 100.0 32 NNNNNNNNNN TA........................... GATACTGGTACCCGCGTAGTGGTCGTACAGAT 1142310 29 100.0 32 NNNNNNNNNN ............................. GCACTGGAGGGGGAACTGTGATGACCGATCAT 1142371 29 100.0 32 NNNNNNNNNN ............................. AGCGCCTCCCCACAGCGCGGGCACGCCTGGTA 1142432 29 100.0 32 NNNNNNNNNN ............................. CAACTCCGATTGTCGGACGCTGGCGGCAACCC 1142493 29 100.0 32 NNNNNNNNNN ............................. GGCCGTGGGACGGCGTGCCGGGTAGATACATC 1142554 29 100.0 32 NNNNNNNNNN ............................. TCCGCAAGCGGGTTGATTATCGTACGCACCGA 1142615 29 100.0 32 NNNNNNNNNN ............................. GCCAATCTGCTCTACACCGCCGCGCGCGCGGC 1142676 29 100.0 33 NNNNNNNNNN ............................. GCGATCGGAGGGCGCATGACCGAGCGCCGCAGC 1142738 29 100.0 32 NNNNNNNNNN T............................ GCCGCCTCAGCGATCCACCGAGCGCGCCGGGA 1142799 29 100.0 32 NNNNNNNNNN ............................. GGTAGGCGCCCTCGCCCAGTTCGTCGAGCTGA 1142860 29 100.0 32 NNNNNNNNNN ............................. CGGGCGATCGGTGAGCACACGATTTCGACATC 1142921 29 100.0 32 NNNNNNNNNN ............................. CTGCTCCTGTGGGGCGTTGCCCCTGCCTCAAC 1142982 29 100.0 32 NNNNNNNNNN ............................. GCGGCACCCCCGTTCTGTGGGACGGGCGTGAT 1143043 29 100.0 33 NNNNNNNNNN ............................. CATGCCGTCACCCCCTCATCCGCCAGATGCTTC 1143105 29 100.0 32 NNNNNNNNNN ............................. AACTGTCTGATTCGGGCTGCCTGCTCGTTGAT 1143166 29 100.0 32 NNNNNNNNNN ............................. AGCTCGCTCAGACGCCGCACGAGTTCCAGCGT 1143227 29 100.0 32 NNNNNNNNNN ............................. TTGTGGACGCCGCGCGCCGATTCGTCCAGGCC 1143288 29 100.0 32 NNNNNNNNNN ............................. CCGTTCCCGGTTAGCCGTCGAAAGCACCCGCC 1143349 29 100.0 32 NNNNNNNNNN ............................. TCCAAGCGCGGGGAACAACTCCCCATCGTGGT 1143410 29 100.0 32 NNNNNNNNNN ............................. CACCGAGGGCATCCTCGGCCGGCTGAGCAACA 1143471 29 100.0 32 NNNNNNNNNN ............................. AGTGCCCGGCTCCAGACCTGCGTCGAGCAACC 1143532 29 100.0 32 NNNNNNNNNN ............................. GCCAATCTGCTCTACACCGCCGCGCGCGCGGC 1143593 29 100.0 33 NNNNNNNNNN ............................. GCGATCGGAGGGCGCATGACCGAGCGCCGCAGC 1143655 29 100.0 32 NNNNNNNNNN T............................ GGCATCGCCCGTGCCGTTCGCGAACGCGTCGT 1143716 29 100.0 32 NNNNNNNNNN ............................. TAGAGAAACGGATGACCGCACTGCACATGGGT 1143777 29 100.0 32 NNNNNNNNNN ............................. ATCTCGACCCGCTCATTGGCGCCCACGACCGG 1143838 29 100.0 33 NNNNNNNNNN ............................. GACGGGGCATGGCGTCGGGGGCGGGTTCCTGGA 1143900 29 100.0 32 NNNNNNNNNN ............................. GGCTGCCTGCGGCCGCCGCCGGCGCGCGGCCT 1143961 29 100.0 32 NNNNNNNNNN ............................. CGCATCTGCGGCGTGTTCGGGGTGCCGCCGAT 1144022 29 100.0 32 NNNNNNNNNN ............................. CCTTGCCTCGCTCGTCCATCGCACTCGCTACC 1144083 29 100.0 32 NNNNNNNNNN ............................. GTGCTTGCGCTCCATGAACGAGTCGGCGTCGG 1144144 29 100.0 32 NNNNNNNNNN ............................. GCCGACAAGAGCCTGGTTGCGTTCGGCCTCGG 1144205 29 100.0 32 NNNNNNNNNN ............................. GGTGACGGGTCGCACGCCTAGTTCAGCGGCCA 1144266 29 100.0 32 NNNNNNNNNN ............................. GTCCGACCCTGACCTCCAGATCATCGCCGAGA 1144327 29 100.0 32 NNNNNNNNNN ............................. GATCGACCTTTGCGGAGGTTTTGGTGGGCGAC 1144388 29 100.0 32 NNNNNNNNNN ............................. CTTCTGTAGCTCTTGCTCACGGACTTCGAGGG 1144449 29 100.0 32 NNNNNNNNNN ............................. CCGCCACCAGATGGGCACGTTCTCGATCCGCT 1144510 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 38 29 32 CGGTTCACCCCCACGCGTGTGGGGACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-10.90,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [85,15] Score: 0.18/0.18 # # Final direction: R [0.55,0.68 Confidence: LOW] >NC_013525 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1901409 29 100.0 32 TCTCGAGCCC ............................. TGGTGGCAGGCGCAGTACCTGGGCTCACAGCC 1901470 29 100.0 32 GCTCACAGCC ............................. GCCTCGCGGATGCGGGCGTCGTCGTCACAGTA 1901531 29 100.0 32 CGTCACAGTA ............................. GTCTCGGGAGGTGCCCACACCCTGCCACGCCA 1901592 29 100.0 32 TGCCACGCCA ............................. GAGGGATTTCGCCTGCTCCCAGGTCGTGAGCT 1901653 29 100.0 31 GTCGTGAGCT ............................. GGGTCACCCTGCGCTTGGCCTTTGTCACGGC 1901713 29 100.0 32 TTGTCACGGC ............................. ACCATCGGTTGCCTCCAGGAGCGCACGGGGAC 1901774 29 100.0 32 GCACGGGGAC ............................. GCGTTGCGGGTGAACCAGGTGCCCGGCCGGTC 1901835 29 100.0 32 CCGGCCGGTC ............................. AATCCCCACAGCTGACCGTGAGCTTCCGTGGA 1901896 29 100.0 32 CTTCCGTGGA ............................. GATCCGGATCGTGATCGTGATGACCAAGCGCG 1901957 29 100.0 32 ACCAAGCGCG ............................. TCGCCAACTGCGTGAGCGCCACGACCGCCGCA 1902018 29 100.0 32 GACCGCCGCA ............................. TCAAGTGGATGTGGGACAAGCTCAAGGGTGTC 1902079 29 100.0 33 CAAGGGTGTC ............................. GCGCAGAGACCAACCATGAGAAGACGCGTAAGA 1902141 29 100.0 ACGCGTAAGA ............................. ACTTGCTAAC ========== ====== ====== ====== ========== ============================= 13 29 32 CGGTTCACCCCCACGCGTGTGGGGACAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [5,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-10.90,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [35.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [1173,621] Score: 0/0.18 # # Final direction: R [0,0.27 Confidence: MEDIUM] >NC_013525 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1925304 29 96.6 32 GTTAGCAAGT ............................A GAAAGCCAGTCTTTAGGGATGCGGAATACACC 1925365 29 100.0 32 GGAATACACC ............................. CCACCGAGACCACGAACCGTGAAGAGCGTCCA 1925426 29 100.0 32 AGAGCGTCCA ............................. AGCTCACGACCTGGGAGCAGGCGAAATCCCTC 1925487 29 100.0 32 GAAATCCCTC ............................. TGGCGTGGCAGGGTGTGGGCACCTCCCGAGAC 1925548 29 100.0 32 CTCCCGAGAC ............................. TACTGTGACGACGACGCCCGCATCCGCGAGGC 1925609 29 100.0 32 TCCGCGAGGC ............................. GGCTGTGAGCCCAGGTACTGCGCCTGCCACCA 1925670 29 100.0 32 CCTGCCACCA ............................. GTATGCGCTCATCGTCTGCTCCTTGTAGTGTG 1925731 29 100.0 32 TTGTAGTGTG ............................. TCCTCCAGGTGAGCACGCGCCCACAGGGGCCG 1925792 29 100.0 32 ACAGGGGCCG ............................. GAGGTACGAGATGATCAAGCGTGAATTCCTTA 1925853 29 100.0 32 GAATTCCTTA ............................. CGTCCGCGAGCGGCTGGGCATGTCCCAGAACG 1925914 29 100.0 TCCCAGAACG ............................. GGGCTTGAGA ========== ====== ====== ====== ========== ============================= 11 29 32 ATTGTCCCCACACGCGTGGGGGTGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [5,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-10.90] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [53.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [147,423] Score: 0.18/0.18 # # Final direction: R [0.27,0.59 Confidence: MEDIUM] >NC_013525 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 584091 29 100.0 32 NNNNNNNNNN ............................. GCCTGTAAGCGGACGTGGTGGTCGTGACCACC 584152 29 100.0 32 NNNNNNNNNN ............................. CGCGGGCGCGCTGTCGGGGGTGGCGCTGCAGA 584213 29 100.0 32 NNNNNNNNNN ............................. CCGGCCCAGCACCTGCCCCCAGCGCTGCAGTG 584274 29 100.0 32 NNNNNNNNNN ............................. GGCCCGTGTGCCCGGAGTGCGAGCCCGACGCT 584335 29 100.0 32 NNNNNNNNNN ............................. AACAGGACCTGCAGGCGCTCTCGCAGGCCCAG 584396 29 100.0 32 NNNNNNNNNN ............................. ATGCTGCTGGGATCGCAGGCCAAGAAGGGGAA 584457 29 100.0 32 NNNNNNNNNN ............................. TACCTCGCCCGGCTCTGCCCCTCCCGCTGGTA 584518 29 100.0 32 NNNNNNNNNN ............................. GCCAAGGCTCAGGGCATGGAGGCAGCCAAAAG 584579 29 100.0 32 NNNNNNNNNN ............................. ACCTTCACAGCGCCTCCCTGCCCCTCCTGCAG 584640 29 100.0 33 NNNNNNNNNN ............................. CGCACGCCCAGCGGATCATGTGGTCGTTGCCAC 584702 29 100.0 32 NNNNNNNNNN ............................. TCCGGCCAACTCCTCACTCCCGCCCGCCAGGC 584763 29 100.0 32 NNNNNNNNNN ............................. GCACCGTGCGGGCGGTGTTTGCCCGCCTGAAC 584824 29 100.0 32 NNNNNNNNNN ............................. TCCTCACGCGCCATCTCGACGGATTCCGAAGG 584885 29 100.0 32 NNNNNNNNNN ............................. CTCACGGCGCCCGTCGGCCTGCGGGCGATGCC 584946 29 100.0 32 NNNNNNNNNN ............................. CAGGGCGCGGGTCCAGGCGGTAGCCTCGCGGA 585007 29 100.0 32 NNNNNNNNNN ............................. ATGCACGCCCCCGTGCGCACGGGCTACCTGCG 585068 29 100.0 32 NNNNNNNNNN ............................. CAAACTCGACTGGGAGAACTACATATATGTGC 585129 29 100.0 32 NNNNNNNNNN ............................. CTCACGGCGCCCGTCGGCCTGCGGGCGATGCC 585190 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 19 29 32 ATTGTCCCCACACGCGTGGGGGTGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [5,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-10.90] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [53.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [128,232] Score: 0/0.18 # # Final direction: F [0.27,0 Confidence: MEDIUM] >NC_013526 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1043703 30 100.0 37 NNNNNNNNNN .CC..G.C........T.C......T.... TATGCCCTGAGTGTTGGGAGCATATTCGGGAGGAGTA 1043770 30 100.0 36 NNNNNNNNNN .............................. CGCCGATATGGCGTGCCAGCCAGCTGGCTGGAATAC 1043836 30 100.0 35 NNNNNNNNNN .............................. GGCGTTCGGCGCGATCACGGATGGCGGGGCGGGCG 1043901 30 100.0 37 NNNNNNNNNN .............................. TCGAGGAGATACGCTATGGTCATCGAACCTGAGACCC 1043968 30 100.0 37 NNNNNNNNNN .............................. TGGGACAAATCTGACGCCTTTTTCCGTCTGTACGGCG 1044035 30 100.0 37 NNNNNNNNNN .............................. CTGCCAGAACAGGGTCCACCTCGGAGCATCGGGATCG 1044102 30 100.0 36 NNNNNNNNNN .............................. GGCGAGGCGCACGATGGTGGTGCGCCGGCAGTGGTA 1044168 30 100.0 38 NNNNNNNNNN .............................. CAGCTGCTGCGCGCCGAGCTCTACGTCGACTCCGCCTT 1044236 30 100.0 37 NNNNNNNNNN .............................. GCAGAAAAGGATCATCAATAAGATAATCCCGCATCGG 1044303 30 100.0 36 NNNNNNNNNN .............................. AGCCCGCGCCAGTCACCCACGTCCGGAATGTACGTG 1044369 30 100.0 37 NNNNNNNNNN .............................. GCGCAAGGGATAGAGAAATTCTAACCAAATTTTAACC 1044436 30 100.0 37 NNNNNNNNNN .............................. TTGTTAGTGTCGGCATGTTGCCTTGGCTGCTGCATGC 1044503 30 100.0 36 NNNNNNNNNN .............................. CACTATACCCAGAACACGAAGGAGGTAGAGAAATGG 1044569 30 100.0 37 NNNNNNNNNN .............................. GCATATTTGGCAGAAGGCATGCAGGACGTGGAATTTG 1044636 30 100.0 36 NNNNNNNNNN .............................. ATCGCTCTGGTACTCTGCGCAGACTCCCAACATCCA 1044702 30 100.0 37 NNNNNNNNNN .............................. GCAAGATGAAGTGGGACTAGATTAGTGTCGAAATTGG 1044769 30 100.0 38 NNNNNNNNNN .............................. CTGCTGTCTGGAACTATGGTACTGGTCCGGGCGGTTCC 1044837 30 100.0 37 NNNNNNNNNN .............................. ACGTACTGGCATTGAAGGAAGCCTATGAGCAGTTATG 1044904 30 100.0 36 NNNNNNNNNN .............................. AGACGCCATCACTGACGCTGGTGCCGGCCTGGGCGC 1044970 30 100.0 36 NNNNNNNNNN .............................. TATCAGCGTGCTGCCGCAGAGAAACATAAGTTTGAA 1045036 30 100.0 37 NNNNNNNNNN .............................. TGGTCGAGTATGTGGGCAGGCAGTGGGGCGTTTACGG 1045103 30 100.0 36 NNNNNNNNNN .............................. CACGTTCAGCGGTGCTAACGCTGGTACGGTCACTGA 1045169 30 100.0 37 NNNNNNNNNN .............................. CCTAAGTGGCGCTTTCCTGAACACCTTTTGGAAGGAG 1045236 30 100.0 39 NNNNNNNNNN .............................. TTTGTTCCTTACTGACCATATCACGGTCGATCCCAACAA 1045305 30 100.0 38 NNNNNNNNNN .............................. AGGTACGACCTGCGCCTTGCCCGAAATGTTTTCGCGGC 1045373 30 100.0 37 NNNNNNNNNN .............................. TCTGCTCACGGTCCATCTCACACCTCCTCATAGTGGG 1045440 30 100.0 37 NNNNNNNNNN .............................. CGAATGAAAGCTATCGCAGCAGGATGCCGCGATACTA 1045507 30 100.0 37 NNNNNNNNNN .............................. TGTAACTATATAATGTCCAGATGTGTTTTGCCAATTT 1045574 30 100.0 37 NNNNNNNNNN .............................. CAATGCAACAACAACACACTGAATGGAGGTAGACAGA 1045641 30 100.0 36 NNNNNNNNNN .............................. CGGAGTACTGGCACAAGCGATATCCGGTGCACCGGA 1045707 30 100.0 36 NNNNNNNNNN .............................. GGTAAACCGCCCTTTTTCTCACGGTAAATTGCCGGG 1045773 30 100.0 38 NNNNNNNNNN .............................. GGTCCGCTCCCTGGACCTGCCTGATCCAGTGGAGCTCC 1045841 30 100.0 35 NNNNNNNNNN .............................. GATCACGAGGCACATGTGGTAGTCCAGCAGCAGCG 1045906 30 100.0 37 NNNNNNNNNN .............................. GCATCTCGAATGCTCGGGAGGCCATCCAGAAGGCGAT 1045973 30 100.0 37 NNNNNNNNNN .............................. CTGCGCGCTCTCCTGACGACGTGCTGTATGTGTACGG 1046040 30 100.0 38 NNNNNNNNNN .............................. GCATCGAGAAGTGGGTTCGACGGGGGCTCACGGGACAA 1046108 30 100.0 36 NNNNNNNNNN .............................. AGGGACGGTCCGGCGTGGCGGAATTGAGCGCGATCA 1046174 30 100.0 37 NNNNNNNNNN .............................. CAGAGCCTCACCAACCTGTTGTTTTCAGGTGGCAACC 1046241 30 100.0 36 NNNNNNNNNN .............................. CTCCCGTTTCGTTTACAACAGCATAGTAATCGAACA 1046307 30 100.0 37 NNNNNNNNNN .............................. TGTAACTATATAATGTCCAGATGTGTTTTGCCAATTT 1046374 30 100.0 37 NNNNNNNNNN .............................. CAATGCAACAACAACACACTGAATGGAGGTAGACAGA 1046441 30 100.0 36 NNNNNNNNNN .............................. CGGAGTACTGGCACAAGCGATATCCGGTGCACCGGA 1046507 30 100.0 36 NNNNNNNNNN .............................. CGAAGTAGGCGGGATTATCCTGTGCCCCTATTTCTA 1046573 30 100.0 36 NNNNNNNNNN .............................. GTAAACTCCATAGTAGCCATCTAATTCCCCACTCCC 1046639 30 100.0 37 NNNNNNNNNN .............................. TATGAGCACAAAATAATCGGCATTGGCTACCATGCTG 1046706 30 100.0 36 NNNNNNNNNN .............................. GGGAGGAAGCGGCAGCTTGGGTGCCGGCTTGGCAGG 1046772 30 100.0 36 NNNNNNNNNN .............................. CTGTGGTTGAGGTACCCAAGAAGGCCGTGGAGGCGG 1046838 30 100.0 38 NNNNNNNNNN .............................. GGGACTACCATGTAGGGATCTATTACCGGCATATCCAG 1046906 30 100.0 36 NNNNNNNNNN .............................. CTGAGCGGTGGCGCGAGCACCAGGCCCGCCAGTACC 1046972 30 100.0 36 NNNNNNNNNN .............................. CCTAATCAGGCCAGTCCAGACCAAGCACGAAGGGGA 1047038 30 100.0 36 NNNNNNNNNN .............................. AGGGGCACAGGATAATCCCACCTACTTCGTGCAGGC 1047104 30 100.0 36 NNNNNNNNNN .............................. CGCACTTGCCGGACTTGGCATCATAGTACCAGCCAA 1047170 30 100.0 36 NNNNNNNNNN .............................. TGACCGCATTCAGTGCCTCAAACTGCAACCTCTCCC 1047236 30 100.0 37 NNNNNNNNNN .............................. GGCTGTTCCTCGAAGAAGAATAGCCGCCAGGGGGCCT 1047303 30 100.0 36 NNNNNNNNNN .............................. TCGGAAAAATAGATGCTTTCCAACTCCGCCTGCTGC 1047369 30 100.0 36 NNNNNNNNNN .............................. GGTAAACCGCCCTTTTTCTCACGGTAAATTGCCGGG 1047435 30 100.0 38 NNNNNNNNNN .............................. GGTCCGCTCCCTGGACCTGCCTGATCCAGTGGAGCTCC 1047503 30 100.0 35 NNNNNNNNNN .............................. GATCACGAGGCACATGTGGTAGTCCAGCAGCAGCG 1047568 30 100.0 37 NNNNNNNNNN .............................. GGATCAGAATCGATGCACAGAGTTTCGCCAAGGCTTT 1047635 30 100.0 38 NNNNNNNNNN .............................. TGTATAACGCCGTGCTCGTCACGCACCTCGAGAAGGGC 1047703 30 100.0 36 NNNNNNNNNN .............................. AGGGACGGTCCGGCGTGGCGGAATTGAGCGCGATCA 1047769 30 100.0 37 NNNNNNNNNN .............................. CAGAGCCTCACCAACCTGTTGTTTTCAGGTGGCAACC 1047836 30 100.0 36 NNNNNNNNNN .............................. CTCCCGTTTCGTTTACAACAGCATAGTAATCGAACA 1047902 30 100.0 36 NNNNNNNNNN .............................. CGGGTGTGTGTCGGTCGTCATCGTTACCTCCTTCCG 1047968 30 100.0 37 NNNNNNNNNN .............................. CTGGGAGGCGATGTGCCCTGCCCGCGGTGCGAGGAGG 1048035 30 100.0 36 NNNNNNNNNN .............................. GATTCTACGGTAGGCTATCATGAATTTCACAGGAGG 1048101 30 100.0 37 NNNNNNNNNN .............................. CCTAGTGCTGGCCTCAGGGGGGTTGTAGCCCCACCCC 1048168 30 100.0 36 NNNNNNNNNN .............................. GGGTCCACGTGGATTGCAACATGCACAGGGTGCGGC 1048234 30 100.0 37 NNNNNNNNNN .............................. CGGCCTACGCTCGGTGTTGACCATCTCTGCACACCCC 1048301 30 100.0 36 NNNNNNNNNN .............................. GTGTGGGCTTGTGATTGGTCTCGGCTGTAGGGATGG 1048367 30 100.0 36 NNNNNNNNNN .............................. CCTGGGGCAAGGACAGCACGGTGCTGCTGCACCTGG 1048433 30 100.0 37 NNNNNNNNNN .............................. TTCAGGGTTCAGGGCTACCAGGGAGACGACGTCTCCC 1048500 30 100.0 37 NNNNNNNNNN .............................. GTTACCTACTCCCTCTTTTTTTGTGCCCGCAACCTTG 1048567 30 100.0 36 NNNNNNNNNN .............................. GATGCCGGATACACGCGCGCCGGTGATGTATCGGAG 1048633 30 100.0 36 NNNNNNNNNN .............................. TCAAGATCAGTGATATACAGACCACCGGCGTCATCC 1048699 30 100.0 37 NNNNNNNNNN .............................. TAGGTAGGCTACGAACGAATGTCCATCGCCACAACCC 1048766 30 100.0 36 NNNNNNNNNN .............................. TATCATAGAGGTATCACACAATCAGGAGGCTAAAAA 1048832 30 100.0 37 NNNNNNNNNN .............................. CTGGTTTGGTGGCTGCGTACAATCCGCAAGATAAGAG 1048899 30 100.0 36 NNNNNNNNNN .............................. CAACCTATTGGCATGGAAAATTCCTTGGCAACCTAT 1048965 30 100.0 36 NNNNNNNNNN .............................. AGCCAACGCCGATTATTTTGTGCTCATACAGACCGC 1049031 30 100.0 36 NNNNNNNNNN .............................. GAATTCGTGGACCCGGAGACGGACACGGAGAGCGCC 1049097 30 100.0 37 NNNNNNNNNN .............................. TTGGCGTTGATCTCGACTATGACGACCCTGCAGCCGT 1049164 30 100.0 61 NNNNNNNNNN .............................. ACCCCTTATAGGTAGGCTACGAACGTGCTCTGGATTGGCAGGGTCAAACGTCTCGCTTTCA 1049255 30 100.0 38 NNNNNNNNNN .............................. CATGACCGGCATCTACCTCACCTCCTACGCTATGCCCG 1049323 30 100.0 38 NNNNNNNNNN .............................. GTCCCAGGAGCGGGTGGGTGACCTCTATGTGGTCACGG 1049391 30 100.0 36 NNNNNNNNNN .............................. GAACACATGTTCTACACTCACGCGTCTTCCAGCATG 1049457 30 100.0 36 NNNNNNNNNN .............................. TGGTAGCATGCTACGATATAGACGTCGAAATCTAAC 1049523 30 100.0 35 NNNNNNNNNN .............................. GCGCTATCCCCTCTGGGCCGCACGCACGCACCTGT 1049588 30 100.0 37 NNNNNNNNNN .............................. GGATCAGAATCGATGCACAGAGTTTCGCCAAGGCTTT 1049655 30 100.0 36 NNNNNNNNNN .............................. TGTACACAAGGGCGTTGTTGCTTCCATCATTGTTTC 1049721 30 100.0 39 NNNNNNNNNN .............................. TCGAATTATGTGTTCGTGGACCCGGACACGGAGAGCGCC 1049790 30 100.0 36 NNNNNNNNNN .............................. AAAATGGGGATCTAGAACATTACAGGAGAAGGAGAA 1049856 30 100.0 37 NNNNNNNNNN .............................. TACACGCCTCTGGATGGAGGCGTGCAGGCGGACGTGG 1049923 30 100.0 36 NNNNNNNNNN .............................. CTCAGTACGTGGTAGAGGTTCTCAGCGAACAGCTGC 1049989 30 100.0 36 NNNNNNNNNN .............................. TACCATCGGGGCTGTAGTATACTTCGCCCCGGTCAG 1050055 30 100.0 35 NNNNNNNNNN .............................. ACGAACCTCCTTTCCACTAAGCGTTGAAACAATCA 1050120 30 100.0 37 NNNNNNNNNN .............................. TACCAATCGGAACGCTTCTTGCAATTGCTGGAATCAC 1050187 30 100.0 36 NNNNNNNNNN .............................. ATCCACATATGCGCCGAGGGGGGTTTCGACCCCGAG 1050253 30 100.0 37 NNNNNNNNNN .............................. TTGATGCCAATAGTATGTATCCATCCGTCATGTTGCA 1050320 30 100.0 36 NNNNNNNNNN .............................. GCACCCCCGGAGAAGCTGCTAAAGAAAAGCTAGGCA 1050386 30 100.0 36 NNNNNNNNNN .............................. TTTAGAACACTTGCACTTTTATTGCTTGTTAAGTAA 1050452 30 100.0 36 NNNNNNNNNN .............................. CAGAAAACATAATGGCGGTTACGGTTGATGGTAGGC 1050518 30 100.0 37 NNNNNNNNNN .............................. CTTTATCCGTGTCGAGCCCCTCGAGGAGGCCTCTGTA 1050585 30 100.0 35 NNNNNNNNNN .............................. GTGACCGGCAAGCGTTACGATATGCACGTGGGTGG 1050650 30 100.0 37 NNNNNNNNNN .............................. CGACCGTCGGGGCTGTAGTATACTTCGCCCCGTTCGG 1050717 30 100.0 36 NNNNNNNNNN .............................. GGATTATAGCATCACATACAGACGGGAGGTGTGAGA 1050783 30 100.0 36 NNNNNNNNNN .............................. AACTCGTGTCACACGAGGGGCTGAATTCGGTACCTG 1050849 30 100.0 36 NNNNNNNNNN .............................. TGGTCTCGCGCACGAGTTGGCGCACCGTGAAAGGAG 1050915 30 100.0 35 NNNNNNNNNN .............................. CTCGGGGACGTCGTCCCCCTGGCAACCTTGAACCC 1050980 30 100.0 39 NNNNNNNNNN .............................. TGGTATCTGGTACATCTCGGAGGGCCCGGCTTGATAGGC 1051049 30 100.0 37 NNNNNNNNNN .............................. CTTCATCAGAGTAGGAGACCTCAAAGCGCTCTTCGTG 1051116 30 100.0 37 NNNNNNNNNN .............................. CAAATGGTATACCTTGTGCGCGCAAACTACGCGCGAC 1051183 30 100.0 37 NNNNNNNNNN .............................. TTCCCACTCATCCCAATGTTCACAGTCGAAGATAAAG 1051250 30 100.0 37 NNNNNNNNNN .............................. AAGACCCTTCATCGCCGTGGAGGCCATCGATCATCGA 1051317 30 100.0 37 NNNNNNNNNN .............................. GGCAAATGGAAATTACCCCGCGACAGAAAATTTTCGT 1051384 30 100.0 36 NNNNNNNNNN .............................. GTTTATCACAGACCTAGAAACAGTCGACCCCAACTA 1051450 30 100.0 39 NNNNNNNNNN .............................. CAGGTTGGCAAATCTCGCGGGAGAAGGAGGTGAGCCCCA 1051519 30 100.0 36 NNNNNNNNNN .............................. ATCCGGACATTATATAGTTACAAAGGAGCAGAAAAA 1051585 30 100.0 37 NNNNNNNNNN .............................. AGTGAGATAAGGGTACCGAAAGTATTTGTGATAGGTA 1051652 30 100.0 37 NNNNNNNNNN .............................. TTTCCTAAATGCACATAAAAAGAAAGGAGTGGGCAAA 1051719 30 100.0 38 NNNNNNNNNN .............................. GCTACTGGTGCTCAGTCGATCCATAGGGCTCGCTCCAT 1051787 30 100.0 37 NNNNNNNNNN .............................. TAATTTTTTGTCTCGGGATTCTACGGTAGGCTATCAG 1051854 30 100.0 37 NNNNNNNNNN .............................. CATATTTCACGCGCGGGGAGTACGGTTATGTCGAGTA 1051921 30 100.0 37 NNNNNNNNNN .............................. CCGAGGTGGAGGCGGCTTGGGACGTGGTGCTGGCTTC 1051988 30 100.0 38 NNNNNNNNNN .............................. TCCCCGCAAATACAACCCGGAAGATTCCATCCTGGACC 1052056 30 100.0 38 NNNNNNNNNN .............................. TGGAGTTCGAGCTGCGCCCGCTGCGACAGATGCCGGAA 1052124 30 100.0 36 NNNNNNNNNN .............................. TCGAGCGAATTTTGGAGAATTTTTTGGAAAAAAATC 1052190 30 100.0 37 NNNNNNNNNN .............................. CCTCAGCACAATATACAAGTGGTTGTAGGGTACCCCT 1052257 30 100.0 35 NNNNNNNNNN .............................. AAAATAGCCCCTAGTACATATGTGCTAGTTCCCCT 1052322 30 100.0 37 NNNNNNNNNN .............................. CACCGACCTCAGGGAGTTCCCGAAGGTCGGTGGAGCC 1052389 30 100.0 35 NNNNNNNNNN .............................. AAAATAGCCCCTAGTACATATGTGCTAGTTCCCCT 1052454 30 100.0 36 NNNNNNNNNN .............................. TATCATAGAGGTATCACACAATCAGGAGGCTCAAAA 1052520 30 100.0 38 NNNNNNNNNN .............................. CTCCTGGGTCCGTAGAAGTTCACGGACCCTTTCCCTTG 1052588 30 100.0 35 NNNNNNNNNN .............................. TCGTTGTGATATATGCGGAGAGGCACTAGTTACGC 1052653 30 100.0 36 NNNNNNNNNN .............................. GCTTCACCTCCTCAGATGTCCGACAGTGGTCAGAAA 1052719 30 100.0 36 NNNNNNNNNN .............................. GTATTCCCTCTATTCCGCTCTGCTGTCCGTGCAGGA 1052785 30 100.0 36 NNNNNNNNNN .............................. CCAGGGCGCTCTCCAATATTGGGGATCTCTACCTAT 1052851 30 100.0 37 NNNNNNNNNN .............................. CTCTGGGGCCCGCCAGGCACAGGGAAGACCGCCACCG 1052918 30 100.0 37 NNNNNNNNNN .............................. GACTCGTGCACGCCGAGCAGCTGCGCCACCTGGCCGG 1052985 30 100.0 36 NNNNNNNNNN .............................. GGCGCAGCGGCTGCAGGAGCTCGGGGACATGCTGGC 1053051 30 100.0 36 NNNNNNNNNN .............................. AGGCTCGCCGGGTGCAGGAGTGGATAGCGGAGTACC 1053117 30 100.0 36 NNNNNNNNNN .............................. CCGACCGTATTTTCCAGGAGATCGAGCGCAGGCTGT 1053183 30 100.0 37 NNNNNNNNNN .............................. TCAAAACTGAATAGCCAACACGCGATACCCGTACCAG 1053250 30 100.0 37 NNNNNNNNNN .............................. GAACACTGTACCAATCTGTGGCAGCATGGGCAGGAAT 1053317 30 100.0 36 NNNNNNNNNN .............................. CGAACAAGACTGCTTGATAGGATACCTATCACGATA 1053383 30 100.0 36 NNNNNNNNNN .............................. CGTTTCCAAGGATATTCCCTATTCAGTTTTGGTTGG 1053449 30 100.0 36 NNNNNNNNNN .............................. AAATAGTTTGTCAATAGTTTAGCAAGCGAATTTCTA 1053515 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 148 30 36 GTTTCAATCCCTTATAGGTAGGCTACGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.40,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [40.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [329,564] Score: 0/0.18 # # Final direction: R [0,5.55 Confidence: HIGH] >NC_013592 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 406153 29 100.0 32 TACTTTTAGA ............................. GCTAATCCCCTCTTTCTGAAGGTTGAAGATGT 406214 29 100.0 32 TTGAAGATGT ............................. ATGAAACCTGGTTTCTACTGCGTTGTCGTGAA 406275 29 100.0 32 TTGTCGTGAA ............................. GCTTTTTCAGCCGCAGAATTTACCGCGACCTC 406336 29 100.0 32 CCGCGACCTC ............................. GGCGCGTAAACTTGCTGGTTCAATTGGCAGTG 406397 29 100.0 32 ATTGGCAGTG ............................. GAAGAGGATAATCGAATTGTTATCTATTATCT 406458 29 100.0 32 TCTATTATCT ............................. CTAGGAAACTAGTAAAACAACTGAGCGAAGCA 406519 29 100.0 32 GAGCGAAGCA ............................. GCGATTGACGACGAAAGGGCGCGACTGGCATC 406580 29 100.0 32 GACTGGCATC ............................. TTTGGGATAACGGAGAATTTACGTGCATGAGA 406641 29 100.0 32 GTGCATGAGA ............................. CACCCCTTGAGATGGCTCAGGAATCCGTGCAC 406702 29 100.0 32 ATCCGTGCAC ............................. TCAGCTATAAAATAATTTTTAGTGCACCTTAT 406763 29 100.0 TGCACCTTAT ............................. TAAACGCTGATGCATCTAAAGTTGCGGCAGAT ========== ====== ====== ====== ========== ============================= 11 29 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-13.40,-12.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [86,124] Score: 0/0.18 # # Final direction: F [1.51,0 Confidence: HIGH] >NC_013592 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =========================== ====== 682808 27 100.0 34 TACTTTTAGA ........................... CGATGATACCATTGATGTTTTGCATATATGTCGG 682869 27 100.0 34 TATATGTCGG ........................... CGTGCGAGTGGGCATGTATCAGGGTTCCACAACT 682930 27 100.0 34 TTCCACAACT ........................... CGGCTGGACGAACAAAACGCTATGTTTTGGATAT 682991 27 100.0 34 TTTTGGATAT ........................... CGCCTTGCCAGAGCAGATAATGGCATTGAGAGAG 683052 27 100.0 34 ATTGAGAGAG ........................... CGAGCCGCCATGGATATCACCTTTTTCGTTGACC 683113 27 100.0 35 TTCGTTGACC ........................... CGTGGTCCGAGCGCTTCCACGGCTACGCCATCTTT 683175 27 100.0 34 CGCCATCTTT ........................... CGGGGATTTCGGACTATGAAGGCAGCAGCCGCGA 683236 27 96.3 GCAGCCGCGA .................A......... GTTGCCGTGA ========== ====== ====== ====== ========== =========================== 8 27 34 GTGTTCCCCGCGCCAGCGGGGATAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-13.40,-12.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [207,196] Score: 0/0.18 # # Final direction: F [1.92,0 Confidence: HIGH] >NC_013592 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3931312 28 100.0 32 NNNNNNNNNN ............................ TCAACGACCGTCGGCGCTGTCAGTTGAGATAA 3931372 28 100.0 32 NNNNNNNNNN ............................ GCCACCTGCTGGGGCTGAATATTATGATGGAC 3931432 28 100.0 32 NNNNNNNNNN ............................ ATCCCGGCACTCGTCAGCGAGGAGTACATAGA 3931492 28 100.0 32 NNNNNNNNNN ............................ TTTTCGTTGCCCAACCCTTCCACGAGGTGGAA 3931552 28 100.0 32 NNNNNNNNNN ............................ AGCTGCAACGGTTCCCGATGTCGTGCCGGTGC 3931612 28 100.0 32 NNNNNNNNNN ............................ GGCGATAAATGCGTCTTTAAATTCCTGCACGT 3931672 28 100.0 32 NNNNNNNNNN ............................ AGTATGCGGGGTTAAGACGCGTCGAGTTATGA 3931732 28 100.0 32 NNNNNNNNNN ............................ TGGGGTGGATTAGTACGCTATCTGATCGACAT 3931792 28 100.0 32 NNNNNNNNNN ............................ AGCCAGCGGGCCTTTGTTCGGGGCGCGCCAGT 3931852 28 100.0 32 NNNNNNNNNN ............................ GAACATTACGCCGGGCCGCACAGACCAAAATG 3931912 28 100.0 32 NNNNNNNNNN ............................ CAGCTCAATGAAATGCTGGTTAAGCGCAACCA 3931972 28 100.0 32 NNNNNNNNNN ............................ TTGCGTGCACTTGTATGCGAACGATTTTTCAA 3932032 28 100.0 32 NNNNNNNNNN ............................ AATAAGGCGTACCGCCTGCGCGTGCTTGATCG 3932092 28 100.0 32 NNNNNNNNNN ............................ TTACGGCAGTTAATGAAACTCGGTCTACTTCT 3932152 28 100.0 32 NNNNNNNNNN ............................ CTGGATTGTTGCGATTGTAGAAACGGGTGTAT 3932212 28 100.0 32 NNNNNNNNNN ............................ TTAGCCAAGATTACCCCCGAAAAGTGCAACTC 3932272 28 100.0 32 NNNNNNNNNN ............................ ATGCATCACTACAGCTACGAAGAAATTATTGA 3932332 28 100.0 32 NNNNNNNNNN ............................ GCCCGGCTGGGCAGAACACCCCATGCGGTCAG 3932392 28 100.0 32 NNNNNNNNNN ............................ GACACACACCGGCATGTTGTTCATCGAGTCAA 3932452 28 100.0 32 NNNNNNNNNN ............................ TATCCACATAACGGGATGGTCAATGCCGAGTT 3932512 28 100.0 32 NNNNNNNNNN ............................ ATTGGCGCGCGACTTCGATTCTCAGATGTTTT 3932572 28 100.0 32 NNNNNNNNNN ............................ GTTGACCCAGCGACATGCCGCGCACGCGTTCG 3932632 28 100.0 32 NNNNNNNNNN ............................ GTTCACCGCTACGTTTTTCCGGCCAGAGATCA 3932692 28 100.0 32 NNNNNNNNNN ............................ GGCGCGCACGGTATGACCGGGCAATGCAGGCT 3932752 28 100.0 32 NNNNNNNNNN ............................ GCTATAACCTCAGCCAGATAAACAGACCCGAT 3932812 28 100.0 32 NNNNNNNNNN ............................ TTAATAGCGAGTTCTGACTAATAAGAATTGTC 3932872 28 100.0 32 NNNNNNNNNN ............................ GCTACGAAAACTGGTCCTGATCAAACTCGCAG 3932932 28 100.0 32 NNNNNNNNNN ...........C................ CAGATGTCAGACTGGTCTTTCCCGACAGCCGG 3932992 28 100.0 32 NNNNNNNNNN ...........C................ GCATAGATAGACGGGCAGGCATCACGCATCGC 3933052 28 100.0 33 NNNNNNNNNN ............................ ACAGTTCTGGCGATTAAGGGGATTAAATTAGAT 3933113 28 100.0 1 NNNNNNNNNN T..........TAC.A..G.TGGTTG.C NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 31 28 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 92% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [53.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [299,368] Score: 0/0.18 # # Final direction: F [1.92,0 Confidence: HIGH] >NC_013526 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 23514 29 96.6 32 GTTAGCAAGT ............................C TGCACCTGCACGGTGTTGCCCCCGGTGGGTAC 23575 29 100.0 32 CGGTGGGTAC ............................. AGGAGATGCAGAGCTGGGGGCTCGAGTTCTCT 23636 29 100.0 32 CGAGTTCTCT ............................. CAGCCGCCTCGGGGCTGTTTGGCCTTCTCGTC 23697 29 100.0 32 CCTTCTCGTC ............................. TAACGTCGATCTCGAGAGATGAGCGAGACGAG 23758 29 100.0 32 GCGAGACGAG ............................. CTGGGCGCGGGCGCGAGCACCAGGGGTGCGGG 23819 29 100.0 32 GGGGTGCGGG ............................. CTGGGCGCGGGCGCGAGCACCAGGGGTGCGGG 23880 29 100.0 32 GGGGTGCGGG ............................. TTGGGGGACAAAAATGGTGAGTAGCACATAAG 23941 29 100.0 32 AGCACATAAG ............................. GCAGCGCCACTGCCGCCAGCAACCCGGGCATC 24002 29 100.0 32 CCCGGGCATC ............................. AACAACGACATGCCCGCGCCCCAGGAGCTCAC 24063 29 96.6 32 AGGAGCTCAC ..T.......................... TTGTCCGCAGGGGGGTGGGAGCTCACTCCACC 24124 29 93.1 32 TCACTCCACC ..T...........T.............. GTGCGCGACCACGCCCACCGCTGCCAGGGGAG 24185 29 100.0 32 GCCAGGGGAG ............................. GCGTAGTCCGCCACCGCCTTGAACCCGGGCAC 24246 29 100.0 32 ACCCGGGCAC ............................. TTGTGTGGGATCCTCTTTGGCCGACCGCTGCT 24307 29 100.0 32 GACCGCTGCT ............................. AACACGGAACTACGGGCGGAGCTCGAGCGCGC 24368 29 100.0 33 TCGAGCGCGC ............................. CTACAGATGACGCCTGCTTTGCGCTCCGGGGGC 24430 29 100.0 32 CTCCGGGGGC ............................. TAGAGCGAGCCCGAGGTTGAGAGGCGCACCAT 24491 29 100.0 32 GGCGCACCAT ............................. GCCTCCGAGCTCCTCCGACGCTTCCTGGAGCT 24552 29 100.0 33 TCCTGGAGCT ............................. CGCCGCCCGCAGCGCCTCTCCATCCACCACGAC 24614 29 100.0 32 CCACCACGAC ............................. CAACCGCTGCAACGCCTTCTGCCAGGGGGATA 24675 29 100.0 CAGGGGGATA ............................. GAGCTCCGGA ========== ====== ====== ====== ========== ============================= 20 29 32 ATCGTCCCCACACGCGTGGGGGTGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-10.90] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [53.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [157,245] Score: 0/0.18 # # Final direction: F [0.64,0.41 Confidence: LOW] >NC_013530 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 3188344 25 100.0 36 NNNNNNNNNN CCCTG.TGT.......C........ CCACCGCGACAGGCCGAACACCTGCGCCACGCGGCG 3188405 25 100.0 36 NNNNNNNNNN C........................ CCACCTCTCGCGCGAGGCCATCCTGCTCGCCGACCT 3188466 25 100.0 36 NNNNNNNNNN ......................... CCACGTTCCGTCAGGGTCTGGTGGTGGCGACAGGAA 3188527 25 100.0 37 NNNNNNNNNN ............CG.CTACGCA..G ACCACCAGCGCAACCCTGGCAGTGCCGAGAGGTACGT 3188589 25 100.0 36 NNNNNNNNNN ................G........ GCACTTCACCGAAGCCGGCCCGCCCTGATAGGCCGC 3188650 25 100.0 36 NNNNNNNNNN ......................... GCACGGCGGGTCGGTGAACAGCACGGTCACGGGGTA 3188711 25 100.0 36 NNNNNNNNNN ......................... GCACGCGGTCCCCGCGGTCGGCTCGTCGCCGAGGCT 3188772 25 100.0 36 NNNNNNNNNN ......................... GCACCCGTTGTCGTTCGTCATCGCGTGCAGCACCAA 3188833 25 100.0 36 NNNNNNNNNN ......................... GCACGTGGCCGCCGGTGTCATCATCGCCGCCGGCCA 3188894 25 100.0 37 NNNNNNNNNN ......................... GCACGTCGTCTCCGGGGCGCGCGAGAACCCCGAAGTG 3188956 25 100.0 36 NNNNNNNNNN ....G.................... GCACTGGAGGCGGGGGCGTACGTCGCCGCGGGGGTC 3189017 25 100.0 35 NNNNNNNNNN .......................AG CACGGCACGCCGACGATGTTGGCAGCCTGCTGGGC 3189077 25 100.0 36 NNNNNNNNNN ......................... GCACTACGACATCTCCGTCGCGCACGACTCCAACGA 3189138 25 100.0 36 NNNNNNNNNN ......................... GCACCGTGGGCCCGCCGGCCAGGGCGAGGCCGATCG 3189199 25 100.0 36 NNNNNNNNNN ......................... GCACTTCCGCAGCGCCCGGCACGCGTTCGGGTCAGC 3189260 25 100.0 36 NNNNNNNNNN C........................ GCACCTGCGGACGCTGACGACGGCTGGGCATCAGTC 3189321 25 100.0 36 NNNNNNNNNN ......................... GCACGACTTCACCAAGCAGTACGGCAAGACCCAGCA 3189382 25 100.0 37 NNNNNNNNNN ...............G......... GCACGCCGGTGCCCCTCAACGTGAACGACGTGGTGCG 3189444 25 100.0 36 NNNNNNNNNN ......................... GCACACCCGCGTCAAGGAGCCCGGGGCGGTGTGGGA 3189505 25 100.0 36 NNNNNNNNNN ......................... GCACGAGGGTCGGTCGGTTGAGGTTCTCGACCCCGC 3189566 25 100.0 36 NNNNNNNNNN ......................... CCACAACGACGAGTTCACCAACGTCAACCTGAGCAC 3189627 25 100.0 36 NNNNNNNNNN ......................... CCACTGACCGGTGGCCTGGTCGAGCACGATCCCGGT 3189688 25 100.0 36 NNNNNNNNNN ......................... CCACGTCGCCCAGCGCCTCCGTGCCGGCGGCGGCAC 3189749 25 100.0 36 NNNNNNNNNN C........................ CCACCCCGCGTTGACCTGGGACGCGTTGACCGGGTT 3189810 25 100.0 36 NNNNNNNNNN ......................... CCACGTCGACCTCCTCGAGCGCTCGCAGGTCGATGA 3189871 25 100.0 36 NNNNNNNNNN ......................... CCACCCCGTGTTGTTCACCGTGACGTTGTAGGTCAG 3189932 25 100.0 36 NNNNNNNNNN ......................... CCACGATCACGTCTCCGATCGCTGGCATGTTCACCG 3189993 25 100.0 36 NNNNNNNNNN ......................... CCACAGGGCGATAAGGAGCCGCGCGCCAAGGTTGTG 3190054 25 100.0 36 NNNNNNNNNN ......................... CCACGGCCGCAGCGCGCGGCGGCGCACCTCGTCGGA 3190115 25 100.0 36 NNNNNNNNNN C........................ CCACTTCGACGGCGTCCGGACCGGGGCCGTCGAGAA 3190176 25 100.0 36 NNNNNNNNNN ......................... CCACGAGTTGATCGTGTCCACCAGGGTGCGCGGCCA 3190237 25 100.0 38 NNNNNNNNNN ......................... CCACGGTCGCCGTAGCGGGTCGGTGAGGTCGCGTCGTC 3190300 25 100.0 36 NNNNNNNNNN ......................... CCACCGCTCGGATGCGGGCGCACCGGGTGGGCCGTA 3190361 25 100.0 1 NNNNNNNNNN ......................... NNNNNNNNNN ========== ====== ====== ====== ========== ========================= 34 25 36 GGGCTCACCCCCGCCTACGCGGGGA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [3,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [22-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [33.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [301,71] Score: 0.18/0.18 # # Final direction: R [0.55,1.05 Confidence: LOW] >NC_013530 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3188590 28 96.4 33 GAGGTACGTG ...............G............ TTCACCGAAGCCGGCCCGCCCTGATAGGCCGCG 3188651 28 100.0 33 ATAGGCCGCG ............................ GGCGGGTCGGTGAACAGCACGGTCACGGGGTAG 3188712 28 100.0 33 CACGGGGTAG ............................ GCGGTCCCCGCGGTCGGCTCGTCGCCGAGGCTG 3188773 28 100.0 33 GCCGAGGCTG ............................ CCGTTGTCGTTCGTCATCGCGTGCAGCACCAAG 3188834 28 100.0 33 CAGCACCAAG ............................ GTGGCCGCCGGTGTCATCATCGCCGCCGGCCAG 3188895 28 100.0 34 CGCCGGCCAG ............................ GTCGTCTCCGGGGCGCGCGAGAACCCCGAAGTGG 3188957 28 96.4 33 CCCGAAGTGG ...G........................ TGGAGGCGGGGGCGTACGTCGCCGCGGGGGTCG 3189018 28 78.6 38 GCGGGGGTCG ......................------ AGCACGGCACGCCGACGATGTTGGCAGCCTGCTGGGCG 3189084 28 100.0 33 CTGCTGGGCG ............................ TACGACATCTCCGTCGCGCACGACTCCAACGAG 3189145 28 100.0 33 CTCCAACGAG ............................ CGTGGGCCCGCCGGCCAGGGCGAGGCCGATCGG 3189206 28 100.0 33 GGCCGATCGG ............................ TTCCGCAGCGCCCGGCACGCGTTCGGGTCAGCC 3189267 28 100.0 33 CGGGTCAGCC ............................ CTGCGGACGCTGACGACGGCTGGGCATCAGTCG 3189328 28 100.0 33 GCATCAGTCG ............................ GACTTCACCAAGCAGTACGGCAAGACCCAGCAG 3189389 28 96.4 34 GACCCAGCAG ..............G............. GCCGGTGCCCCTCAACGTGAACGACGTGGTGCGG 3189451 28 100.0 33 CGTGGTGCGG ............................ ACCCGCGTCAAGGAGCCCGGGGCGGTGTGGGAG 3189512 28 100.0 33 GGTGTGGGAG ............................ GAGGGTCGGTCGGTTGAGGTTCTCGACCCCGCG 3189573 28 96.4 33 CGACCCCGCG ........................C... AACGACGAGTTCACCAACGTCAACCTGAGCACG 3189634 28 96.4 33 CCTGAGCACG ........................C... TGACCGGTGGCCTGGTCGAGCACGATCCCGGTG 3189695 28 96.4 33 GATCCCGGTG ........................C... GTCGCCCAGCGCCTCCGTGCCGGCGGCGGCACC 3189756 28 96.4 33 CGGCGGCACC ........................C... CCCGCGTTGACCTGGGACGCGTTGACCGGGTTG 3189817 28 96.4 33 GACCGGGTTG ........................C... GTCGACCTCCTCGAGCGCTCGCAGGTCGATGAG 3189878 28 96.4 33 GGTCGATGAG ........................C... CCCGTGTTGTTCACCGTGACGTTGTAGGTCAGG 3189939 28 96.4 33 GTAGGTCAGG ........................C... GATCACGTCTCCGATCGCTGGCATGTTCACCGG 3190000 28 96.4 33 TGTTCACCGG ........................C... AGGGCGATAAGGAGCCGCGCGCCAAGGTTGTGG 3190061 28 96.4 33 AAGGTTGTGG ........................C... GGCCGCAGCGCGCGGCGGCGCACCTCGTCGGAC 3190122 28 96.4 33 CTCGTCGGAC ........................C... TTCGACGGCGTCCGGACCGGGGCCGTCGAGAAG 3190183 28 96.4 33 CGTCGAGAAG ........................C... GAGTTGATCGTGTCCACCAGGGTGCGCGGCCAG 3190244 28 96.4 35 GCGCGGCCAG ........................C... GGTCGCCGTAGCGGGTCGGTGAGGTCGCGTCGTCG 3190307 28 96.4 33 CGCGTCGTCG ........................C... CGCTCGGATGCGGGCGCACCGGGTGGGCCGTAG 3190368 28 96.4 TGGGCCGTAG ........................C... ACTTCGCGAC ========== ====== ====== ====== ========== ============================ 30 28 33 GGCTCACCCCCGCCTACGCGGGGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [4,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [30.0-31.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [547,61] Score: 0.18/0.18 # # Final direction: R [0.55,0.78 Confidence: LOW] >NC_013532 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 425538 20 100.0 19 NNNNNNNNNN ....G............... TGGTCGTTTTGAGCTCAGG 425577 20 100.0 31 NNNNNNNNNN ...G................ CGCTGAGTGGAAGCCTAGGATTGAGCTCAGG 425628 20 100.0 19 NNNNNNNNNN ...G................ TGGTCGTTTTGAGCTCTGG 425667 20 100.0 31 NNNNNNNNNN .................... CGCTGAGTGGAAGCCTAGGATTGAGCTCTGG 425718 20 100.0 19 NNNNNNNNNN .................... TGGTCGTTTTGAGCTCAGG 425757 20 100.0 1 NNNNNNNNNN ....G............... NNNNNNNNNN ========== ====== ====== ====== ========== ==================== 6 20 23 AATAAGCTTAGAGCCATAGA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [683,641] Score: 0/0.18 # # Final direction: R [0,0.37 Confidence: MEDIUM] >NC_013532 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 425843 20 100.0 31 NNNNNNNNNN .................... CTGAGTGGAAGCCTAGGATTGAGCTCAGGAA 425894 20 100.0 19 NNNNNNNNNN ..................T. GTCGTTTTGAGCTCTGGAA 425933 20 100.0 31 NNNNNNNNNN .A.................. CTGAGTGGAAGCCTAGGATTGAGCTCAGGAA 425984 20 100.0 1 NNNNNNNNNN .................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================== 4 20 27 TGAGCTTAGAGCCATAGACG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [48.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [988,414] Score: 0.18/0.18 # # Final direction: F [0.82,0 Confidence: HIGH] >NC_013532 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 426586 20 100.0 31 NNNNNNNNNN .................... CTGAGTGGAAGCCTAGGATTGAGCTCAGGAA 426637 20 100.0 19 NNNNNNNNNN ..................T. GTCGTTTTGAGCTCTGGAA 426676 20 100.0 31 NNNNNNNNNN .A.................. CTGAGTGGAAGCCTAGGATTGAGCTCAGGAA 426727 20 100.0 1 NNNNNNNNNN .................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================== 4 20 27 TGAGCTTAGAGCCATAGACG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [321,415] Score: 0/0.18 # # Final direction: F [0.37,0 Confidence: MEDIUM] >NC_013592 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3915410 28 100.0 32 AATTGCTACA ............................ GCTACCGAGATCGCCACCTGCCGTGTATCAGC 3915470 28 100.0 32 GTGTATCAGC ............................ AGCATCAGCACCGCTATAACCTCAGCCAAATA 3915530 28 100.0 32 CAGCCAAATA ............................ ACGGCGTGGCCCGATTCCGGGGTGGTACTGGC 3915590 28 100.0 32 TGGTACTGGC ............................ TTGATGACACAGAAAAGCTCGACCGCAAACAA 3915650 28 100.0 32 CCGCAAACAA ............................ ATGGGCGGTTATCGCATGACGCCACACGCCAG 3915710 28 100.0 32 CACACGCCAG ............................ ACGGTGTACGTCACGGTCATTACCTTGGTCAG 3915770 28 100.0 32 CCTTGGTCAG ............................ TGAGATATCAGGCATGGGCCGGTAACCGCGAT 3915830 28 100.0 32 TAACCGCGAT ............................ TAGGCAGCCCATCGCTGACCGGGACTCCAACC 3915890 28 100.0 32 GACTCCAACC ............................ TTATCGAATTCCGTATTAAAATCCTGCTGCGT 3915950 28 92.9 32 CCTGCTGCGT ...........TG............... AATCAGCGGTTGCGTCATCAAGATACGTGTCA 3916010 28 92.9 32 ATACGTGTCA ...........TG............... CGATAACGGAGCGTCTTCCACTAATTGAGACG 3916070 28 96.4 AATTGAGACG ............G............... GAGCTGGAAC ========== ====== ====== ====== ========== ============================ 12 28 32 GTGAACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [9,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [58.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [207,388] Score: 0/0.18 # # Final direction: F [1.42,0 Confidence: HIGH] >NC_013595 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 10094996 23 100.0 31 NNNNNNNNNN ....................... CGCCTGCTGCTGGCCGTACGCCTGCTGCTGA 10095050 23 100.0 34 NNNNNNNNNN ....................... GCCCGGCTGGGAGGGCTGGCCGTAGGGGGACTGC 10095107 23 100.0 37 NNNNNNNNNN T.C.G..AGG............. GGCCGGCTGCTGCCCGTAGGCGCCGGTCCCCTGCTGA 10095167 23 100.0 1 NNNNNNNNNN .....AC................ NNNNNNNNNN ========== ====== ====== ====== ========== ======================= 4 23 34 CCGTAGGCCTGCTGCTGGCCGTA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.80,-0.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [21.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1896,815] Score: 0.18/0.18 # # Final direction: R [0.59,0.64 Confidence: LOW] >NC_013595 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1047741 30 100.0 69 NNNNNNNNNN ..C..GA.T...C.TGC......G.G.... CCGACTGGTCCTGCGGGCACTACGGGTGCGACGGGTCCGGGAGGCCCGACTGGTCCTGCGGGTGCGACC 1047840 30 100.0 51 NNNNNNNNNN ..CG.GA.......C.C....G.G...... CCTGCGGGTGATACGGGTCCTGCTGGTGCGACTGGTGCGACTGGTGCGACT 1047921 30 100.0 60 NNNNNNNNNN ...G.GA.T.....C.C...C......... GAGACGGGTCCTTCCGGTCCTGCGGGCGAGAGGGGTCCTGCGGGTGACATAGGTCCTGCT 1048011 30 100.0 60 NNNNNNNNNN ..CG.GA.......C.CA...G.GA..... GCGACAGGCCCTGCGGGTGCGACGGGTCCGGGGGGGCCGGCTGGTCCTGCGGGTGCGACC 1048101 30 100.0 42 NNNNNNNNNN ..CG.GA.......C.C....G.G...... CCTGCGGGTGAGAGGGGTCCTGCGGGTGAGACTGGTGTGACG 1048173 30 100.0 42 NNNNNNNNNN ..CG..A.G...C.TGC...GG.G...... GAGACCGGTGCTACGGGCCCTGCGGGGCCGGCGGGTGAGACG 1048245 30 100.0 60 NNNNNNNNNN ......T.....C.TGC...CGAGAG.... CCTGCGGGTGACATAGGTCCTGCTGGCGCGACCGGTGCCACAGGTGCGACGGGTCCGGGG 1048335 30 100.0 60 NNNNNNNNNN ..C..G..T...C.TGC....G.GA.C..C GCTACGGGCGCTACGGGTGCGGCCGGTCCTGCGGGCGAGAGAGGTCCTGCGGGTGACACA 1048425 30 100.0 51 NNNNNNNNNN .....G.TG...C.TGC....GAGA.C... GCGGCCGGTCCTGCGGGTCCTGCCGGTGACACGGGCCCTGCTGGTCCTACA 1048506 30 100.0 69 NNNNNNNNNN ...G.GAGG...C.TGC....GACA.T..C GCCGTGGGCCCTGCTGGCCCAGTGGGTCCTGCCGGTGATACAGGTCCTGCCGGTCCGGCGGGCGCGACC 1048605 30 100.0 69 NNNNNNNNNN ...G.CA.G..C..T.C...CG..A....C GCTACGGGTGCTACGGGTGCGGCCGGTCCTGCGGGCGAGAGAGGTCCTGCGGGTGCGACCGGTGCGACC 1048704 30 100.0 42 NNNNNNNNNN ...G.CA.G.......C............A GAGAGGGGTCCTGCGGGTGACACGGGTCCTGCGGGTGAGACG 1048776 30 100.0 51 NNNNNNNNNN .....C..G..C..A............... GCGACTGGTGATACGGGTCTGGTGGGTCCGGCTGGTGATACGGGCCCTGCT 1048857 30 100.0 51 NNNNNNNNNN ........G..C.A................ GAGACGGGTCCTGCCGGTCCGGCGGGCGCTACGGGCGCCACGGGTGCGGCC 1048938 30 100.0 78 NNNNNNNNNN ........G..C.A................ GACATAGGTCCTGCCGGTGCGACCGGTGCGACCGGTGCCGTGGGCCCTGCGGGTCCTGCGGGTGAGACCGGTGCTACG 1049046 30 100.0 42 NNNNNNNNNN ........G..C..A..........T.... GCGACCGGTGCGACCGGTGCCACGGGTCCTGCGGGCGCAAGG 1049118 30 100.0 51 NNNNNNNNNN ....T...G..C..A.......T....... GCGACCGGTGCTACGGGTCTGGTGGGCCCTGCTGGTGATACGGGTCCTGCC 1049199 30 100.0 51 NNNNNNNNNN .............................. GACACAGGTCCGGCGGGTCCTGCGGGCGCGACTGGTGCGGCCGGTCCTGCA 1049280 30 100.0 42 NNNNNNNNNN ...G....G....A...A........T... GACATAGGTCCGGCGGGTCCTGCGGGTGACACGGGTCCGGCT 1049352 30 100.0 33 NNNNNNNNNN ..C..G..G......GCT.....A..A... GACACGGGCGCCATGGGCCCTGCCGGCTCAGTG 1049415 30 100.0 33 NNNNNNNNNN .............................. GACACAGGTCCGGCGGGTCCTGTGGGCGCGACT 1049478 30 100.0 60 NNNNNNNNNN ...G.G......C.TGCC.......T.... GAGACCGGTGCAACGGGTGATACGGGTCCTGTCGGCCCGGCGGGTGCGGTTGGTCCGGTG 1049568 30 100.0 69 NNNNNNNNNN ..CG.G..G...C.TGCC...........G CCCGCGGGCGAGACGGGTCCGGCGGGTGTGACCGGTGCGGCGGGTCCTGCGGGTGACACGGGTCCTGCC 1049667 30 100.0 42 NNNNNNNNNN ..C..G..T...C.TGCC...G.G.....C CCTGCGGGTGACATAGGTCCGGCGGGTCCAGCGGGTGCGGCC 1049739 30 100.0 69 NNNNNNNNNN ............C.TGT....GAGA.C... GCAACGGGTGATACGGGTCCTGTCGGCCCGGCGGGTGCGGTTGGTCCGGTGGGCGCGGCGGGTCCTGCC 1049838 30 100.0 78 NNNNNNNNNN ........G..GC.CGC...CGAGA..... CCGGCGGGTGTGACCGGTGCGGCGGGTCCTGCGGGTGACACGGGTCCTGCCGGCCCGGCTGGTCCTGCGGGAGAGACG 1049946 30 100.0 51 NNNNNNNNNN ........G..GC..GT....G.GA..... GCCACGGGTGCGACCGGTGACACGGGGGACACGGGTGCCACGGGCGCGGCT 1050027 30 100.0 51 NNNNNNNNNN .....C..G..C....CC...G.CA..... GCGACCGGCGCCACAGGCCCGGCGGGTCCCGCGGGGCCGGTGGGTCCTGCC 1050108 30 100.0 33 NNNNNNNNNN ...G..C.G..C....C....G.CA..... GCCACGGGGGCGACAGGTCCCGCTGGCCCGGCG 1050171 30 100.0 42 NNNNNNNNNN ...G.GA.....C.TGC....GACA..... CCTGCGGGTCCGGTTGGTCTTGCGGGGCCGGTTGGACCCGCG 1050243 30 100.0 24 NNNNNNNNNN ...G.G..G......GC...C.TC.T.... CCGGCGGGCCCTGCGGGTGCGGTT 1050297 30 100.0 33 NNNNNNNNNN .....G.TG..C...GC...GGAGA..... CCTGCCGGTCCTGTGGGTCCGGCGGGCGCGGCA 1050360 30 100.0 24 NNNNNNNNNN ..C.TG..G.....C.C...CG.G...... CCCGCGGGTCCGGCGGGTGCCGCC 1050414 30 100.0 24 NNNNNNNNNN .....C.AG..C..C.C............C GACATAGGTCCCGCGGGTCCCGCG 1050468 30 100.0 51 NNNNNNNNNN ..C..G.TG..CC.CGC....G..C....C GCGACGGGTGCCACGGGTGCCACGGGTGCGGCTGGTCCCGCGGGTCCCGCG 1050549 30 100.0 1 NNNNNNNNNN ..C..G.TG...C.TGCC...G..C....C NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 36 30 50 GGTCCTGCCGGTGCGAGGGGTCCTGCGGGT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.30,-0.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [121-126] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [11.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [715,92] Score: 0.18/0.18 # # Final direction: F [0.96,0.64 Confidence: LOW] >NC_013595 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 3928175 24 100.0 54 NNNNNNNNNN ........................ GAGTCCCACGTGGTGCCGTCGGTGCCGGCCGAGTCCCAGGTGGTGCCGTCCGTG 3928253 24 100.0 42 NNNNNNNNNN ........................ CCGGCGGCGTCCCAGGTGGTGCCCGCAGCGAGCACCGAGGCC 3928319 24 100.0 36 NNNNNNNNNN ........................ GAGTCCCAGGTGGTGCCCGCCATGACCGCGGTGGCC 3928379 24 100.0 1 NNNNNNNNNN ........C........CG.C.CT NNNNNNNNNN ========== ====== ====== ====== ========== ======================== 4 24 44 GAGTCCCAGGTGGTGCCGTCGGTG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.20,-0.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [462,264] Score: 0/0.18 # # Final direction: F [1.05,0.37 Confidence: MEDIUM] >NC_013595 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 6476434 20 100.0 31 NNNNNNNNNN .................... AGATCCCGGCGCCACCCCCGGCACAGAGACC 6476485 20 100.0 19 NNNNNNNNNN .................... GGATACCGGCACAGAGACC 6476524 20 100.0 19 NNNNNNNNNN .................... GGATACCGGCGCGGAGACC 6476563 20 100.0 1 NNNNNNNNNN ...T...G............ NNNNNNNNNN ========== ====== ====== ====== ========== ==================== 4 20 23 GGGCGGGACGGCACGCGGTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [2,1] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [16.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [165,671] Score: 0.18/0.18 # # Final direction: F [0.78,0.45 Confidence: LOW] >NC_013595 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 7296633 24 100.0 32 NNNNNNNNNN ........................ CCGGAAGGCCCCCTCGGACGACCGCTTCCGCG 7296689 24 100.0 21 NNNNNNNNNN ........................ GTGGCACGGGTTTCGGGCGCA 7296734 24 100.0 21 NNNNNNNNNN ........................ GTGGCACGGGTTTCGGGCGCG 7296779 24 100.0 1 NNNNNNNNNN ..............ATT....... NNNNNNNNNN ========== ====== ====== ====== ========== ======================== 4 24 24 GGACTGACCACGGGCGCCGGGCCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [3,1] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [16.7-18.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [354,61] Score: 0.18/0.18 # # Final direction: F [1.33,0 Confidence: HIGH] >NC_013595 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 7841731 23 100.0 67 NNNNNNNNNN ..CA....GG.......GCCCAA GGGCGACACCGGACCCCAGGGCCCGCAGGGCCGCCAGGGACCGCAGGGCGCCGACGGTCCACGCGGC 7841821 23 100.0 85 NNNNNNNNNN ..CA....C........GCCCAA GGGCGACACCGGGGCGCAGGGATCGCAGGGCTCCCAGGGTCCGCAGGGCTCCCAGGGACCGCGCGGCCCCAAGGGCGACACCGGC 7841929 23 100.0 58 NNNNNNNNNN .GCA....T..C.....TCC.CA GGGCCCGACCGGCGAGACCGGTGCGACCGGCGAGACCGGCCCGCAGGGCCTGCCGGGA 7842010 23 100.0 67 NNNNNNNNNN ..CA....C.........CC.CA AGGCGACACCGGCCCGCAAGGCCCCAAGGGCGACACCGGCGACCAAGGCCCGCAGGGCCCGCAGGGC 7842100 23 100.0 85 NNNNNNNNNN ..CA....CGAC......CCCAA GGGTGACACCGGCGACACCGGCCCCCAGGGTGAGCAGGGCCCGCAGGGCCTGCCGGGAGACACCGGCCCGCAGGGCCCGCAGGGC 7842208 23 100.0 67 NNNNNNNNNN ..CA....C.....A...CCCAA GGGCGACACCGGCGACCAAGGCCCGCAGGGCCCGCAGGGCGACACCGGCGACCAGGGCCCCAGAGGC 7842298 23 100.0 76 NNNNNNNNNN ..CA.G..C.........CCCAA GGGCGACACCGGCGACCAAGGCCCGCAGGGCCCGCAGGGCGACACCGGGGCGCAAGGCCCCAAGGGTGACACCGGC 7842397 23 100.0 67 NNNNNNNNNN ..CA....C............A. GGGTCCCCAGGGCGACACCGGGCCGCAAGGCGAGCAGGGTGAGCAGGGCGACACCGGACCACAGGGC 7842487 23 100.0 49 NNNNNNNNNN ....................... CGGACCGCAGGGCGAGGCGGGCCCCCAGGGCGACACCGGACCACAAGGT 7842559 23 100.0 31 NNNNNNNNNN ....................... CGGACCACAAGGTGAGGCGGGCCCCCAGGGC 7842613 23 100.0 31 NNNNNNNNNN ...........A........... GGGCCCCCAGGGCGACACCGGACCACAAGGT 7842667 23 100.0 31 NNNNNNNNNN ....................... CGGACCACAAGGTGAGGCGGGCCCCCAGGGC 7842721 23 100.0 31 NNNNNNNNNN ...........A........... GGGCCCCCAGGGCGACACCGGACCACAAGGT 7842775 23 100.0 31 NNNNNNNNNN ....................... CGGACCACAAGGTGAGGCGGGCCCCCAGGGC 7842829 23 100.0 31 NNNNNNNNNN ...........A........... GGGCCCCCAGGGCGACACCGGACCACAAGGT 7842883 23 100.0 31 NNNNNNNNNN ....................... CGGACCACAAGGTGAGGCGGGCCCCCAGGGC 7842937 23 100.0 31 NNNNNNNNNN ....................... GGGCCCCCAGGGCGACACCGGACCACAAGGT 7842991 23 100.0 31 NNNNNNNNNN ....................... CGGACCACAAGGTGAGGCGGGCCCCCAGGGC 7843045 23 100.0 31 NNNNNNNNNN ...........A........... GGGCCCCCAGGGCGACACCGGACCACAAGGT 7843099 23 100.0 31 NNNNNNNNNN ....................... CGGACCACAAGGTGAGGCGGGCCCCCAGGGC 7843153 23 100.0 31 NNNNNNNNNN ...........A........... GGGCCCCCAGGGCGACACCGGACCACAAGGT 7843207 23 100.0 31 NNNNNNNNNN ....................... CGGACCACAAGGTGAGGCGGGCCCCCAGGGC 7843261 23 100.0 31 NNNNNNNNNN ...........A........... GGGCCCCCAGGGCGACACCGGACCACAAGGT 7843315 23 100.0 49 NNNNNNNNNN ....................... CGGACCACAAGGTGAGGCGGGCCCCCAGGGCGACACCGGACCACAAGGT 7843387 23 100.0 49 NNNNNNNNNN ....................CA. CGGACCACAAGGTGAGGCCGGACCGCAGGGCGAGGCCGGACCACAAGGT 7843459 23 100.0 49 NNNNNNNNNN .....G..C..C........CA. CGGACCACAAGGTGAGGCCGGACCGCAGGGCGACGCCGGACCACAAGGT 7843531 23 100.0 49 NNNNNNNNNN ....................CA. CGGACCACAAGGTGAGGCGGGCCCCCAGGGCGACACCGGACCACAAGGT 7843603 23 100.0 31 NNNNNNNNNN .....G..C..C........CA. CGGACCACAAGGTGAGGCCGGACCGCAGGGC 7843657 23 100.0 31 NNNNNNNNNN ..C........A..A.....CA. CGGACCGCAAGGTGAGGCTGGACCGCAAGGT 7843711 23 100.0 1 NNNNNNNNNN .....T........A..T..... NNNNNNNNNN ========== ====== ====== ====== ========== ======================= 30 23 45 GAGGCCGGACCGCAGGGCGAGGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [4,] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-1.60,-1.50] Score: 0/0.37 # Array degeneracy analysis suggestion: R [69-24] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [16.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [1018,581] Score: 0/0.18 # # Final direction: R [0.37,0.68 Confidence: LOW] >NC_013595 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 9623281 24 100.0 36 NNNNNNNNNN AG.G.CG........G........ GGCCACCGCGGTCATGGCGGGCACCACCTGGGACTC 9623341 24 100.0 42 NNNNNNNNNN ........................ GGCCTCGGTGCTCGCCGCGGGCACCACCTGGGACGCCGCCGG 9623407 24 100.0 54 NNNNNNNNNN ........................ CACGGACGGCACCACCTGGGACTCGGCCGGCACCGACGGCACCACGTGGGACTC 9623485 24 100.0 1 NNNNNNNNNN ........................ NNNNNNNNNN ========== ====== ====== ====== ========== ======================== 4 24 44 CACCGACGGCACCACCTGGGACTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.60,-1.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [430,436] Score: 0/0.18 # # Final direction: R [0.37,1.05 Confidence: MEDIUM] >NC_013642 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1025628 30 100.0 34 AACTCAACGG .............................. CAGTAGATGAACCACTCTTGATCCGACTTTTCCC 1025692 30 100.0 37 GACTTTTCCC .............................. ATGGACGTGTGAAAATAATTGCAGAGGCCGTAACAAA 1025759 30 100.0 37 CCGTAACAAA .............................. TACTGGAGTTCTGCTTCTCCTGTCGTACGTCCCGTTT 1025826 30 100.0 36 CGTCCCGTTT .............................. TGTACTCTCCAGCGAGCATAAAAGCGAACGCGAAAG 1025892 30 100.0 37 AACGCGAAAG .............................. ACTCGATGAAGAAAAAAATGCCCCTCAAGAAAGCCAA 1025959 30 100.0 37 AGAAAGCCAA .............................. TGTGATAAAGAAATTGTACGGTTCAGTAGATAAGCTG 1026026 30 100.0 35 AGATAAGCTG .............................. ATGGCTGCCTTCCCTGCCTGGTCGTTGTCGAAGGC 1026091 30 100.0 35 TGTCGAAGGC .............................. CGAACCGCTTTGTAACGTAGATGTAACTTGACATA 1026156 30 100.0 36 ACTTGACATA .............................. ACGTTCAAATCGAAAAGAAACCCTTCCCCACCTCCT 1026222 30 100.0 37 CCCACCTCCT .............................. ACGCAAGACGACATCAGGCAGGGAACCTGCAAAGTAA 1026289 30 100.0 35 TGCAAAGTAA .............................. TGCATTTTATGACTTTCGGCGAGTTCGTCCAGTTG 1026354 30 100.0 36 CGTCCAGTTG .............................. TATCTCCTCCGATGGCGGGAGCTGCGGAGTCGAGGA 1026420 30 100.0 36 GAGTCGAGGA .............................. AGGAAAGTTCCTTGTATACTCAGTCGAGCACAGCCT 1026486 30 100.0 36 AGCACAGCCT .............................. TGACAGAGACATGCAAGATGAGGAGATAAACACATA 1026552 30 100.0 37 TAAACACATA .............................. TCGGTTTCTGGATTCATTGCCGCAGCAACCCATGTAC 1026619 30 100.0 37 ACCCATGTAC .............................. TTCCCATGTTGGTTACTACCACTAAACTCTTATCGCT 1026686 30 100.0 36 TCTTATCGCT .............................. ACTATTCACCCGAAAATCCTGACGAATGGTCTCAAC 1026752 30 96.7 TGGTCTCAAC .........A.................... GCTGTTTTGT ========== ====== ====== ====== ========== ============================== 18 30 36 GTTTCAATAGTTCCTTAGAGGTATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.80,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [625,136] Score: 0.18/0.18 # # Final direction: R [0.96,4.5 Confidence: MEDIUM] >NC_013642 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1061493 29 100.0 36 CTTGAAAGAG ............................. TATCAGTCGTCTGAAGTTCCTGTCCCGTCTTTGGAG 1061558 29 100.0 37 GTCTTTGGAG ............................. TATTATATCCTCATATGGAATGCTCGCCCAGTTTTCG 1061624 29 100.0 39 CCAGTTTTCG ............................. TGCACTAATTACTTTCGGTGTTCCGGCAGGTAGATTATG 1061692 29 100.0 38 GTAGATTATG ............................. TCTCTGCAGGTGAGACAAAGACCTTCACGATCAATCTG 1061759 29 100.0 38 GATCAATCTG ............................. GAAAATATCCTCAGAATCAATGGGGCTTCTAACACCAG 1061826 29 100.0 37 CTAACACCAG ............................. TTCGAATGTTTCCCGCATCGTCTCGCCCCAGCTTCAG 1061892 29 100.0 37 CCAGCTTCAG ............................. AGGTAGTAGGTGAGAAGCACGTTGCTTGCAGGATCTT 1061958 29 100.0 36 GCAGGATCTT ............................. ATGGCAGGATGGGTTAGCTTTTGTCGAAACAACAAG 1062023 29 100.0 36 AAACAACAAG ............................. TGAAGCACGAAAGGCACTTAATATCCTGGAGCTCAA 1062088 29 100.0 38 TGGAGCTCAA ............................. TTAGCCTTTCTTATTCGTCTTACAGACAAACTTAACAG 1062155 29 100.0 42 AACTTAACAG ............................. TTCTTCTCGCTCTTTCGATCCTGCGGGTGGTGGGTTCCAAGC 1062226 29 100.0 38 GGTTCCAAGC ............................. TTTACTCCTGAATATGCTTCTTTCTTTTGTCTGCTTTT 1062293 29 100.0 36 GTCTGCTTTT ............................. AGGCTTGAGCTTGGGCACAACATTGAGGTTGGTCAA 1062358 29 100.0 37 GGTTGGTCAA ............................. CGAGAACTCTTAGAGCTTCCTTGACTCGTTCTTTTAA 1062424 29 100.0 37 GTTCTTTTAA ............................. GCAACTCGAAAGGTTTTTCTACAGAAAGCATGAGAAC 1062490 29 100.0 36 GCATGAGAAC ............................. GATTTGTCTTTCCCTTTTGTTCAATCTTTTGCCCTC 1062555 29 100.0 38 TTTTGCCCTC ............................. TCAGAAGATTCGCCGAGTGGTTCGGATCGCTCCCCAAA 1062622 29 100.0 37 GCTCCCCAAA ............................. CAGAACGACCTCCACGTATCCTGTCGGGTACACGATC 1062688 29 100.0 37 GTACACGATC ............................. TGCAGAATCACATCAATGAGATTGAACAGCAACTCGA 1062754 29 100.0 37 AGCAACTCGA ............................. AAAATTGTGGGAGGTGTTATCATGTGGAAAGTTTATG 1062820 29 100.0 36 AAAGTTTATG ............................. GAAGAGTGGGGCAGAAAAGACCGCATGGACATCCAG 1062885 29 100.0 37 GGACATCCAG ............................. GAGGTGGTGTTGTGAACAGCCTGAACGGTCTTTCCTT 1062951 29 100.0 35 GTCTTTCCTT ............................. TTCCCGAGACAGCATTGGAGTCAGAGAGCGATCTT 1063015 29 100.0 37 GAGCGATCTT ............................. TCGATCGCCTTCTGTCTTTTCTCAGACCCAGTTTCTC 1063081 29 100.0 36 CCAGTTTCTC ............................. TGGTAGAATATGCGTGGATGCATATGGATGAAAGGA 1063146 29 100.0 38 GATGAAAGGA ............................. ATTGTGACGTAGGGAAAAGTTGCGTCTGAAGGTACATG 1063213 29 100.0 39 AAGGTACATG ............................. AAGCCGAAGCAATTGCGCGTAACGTTGCGCTCATCCAGA 1063281 29 96.6 CTCATCCAGA ............................T TTGAAAAAA ========== ====== ====== ====== ========== ============================= 28 29 37 GTTTTTATCTTCCTAAGAGGAATATGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.97%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-3.40,-3.40] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [61.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [676,541] Score: 0/0.18 # # Final direction: F [0.41,0.27 Confidence: LOW] >NC_013642 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1192076 30 100.0 36 AACTCAACGG .............................. AAATTCTGGTGGTAAACCTAAGTCAGTGTATCTGTC 1192142 30 100.0 36 TGTATCTGTC .............................. TTGCTTCGACCATATGGCCAAATCTTGCTCGAATCT 1192208 30 100.0 37 GCTCGAATCT .............................. GATGAGATTGTTTTCGACGTCGGAGATTCGCTACATC 1192275 30 100.0 35 TCGCTACATC .............................. TCACTGGACGATTCCTTCAGGAAAGAGGTTATATC 1192340 30 100.0 36 AGGTTATATC .............................. CAAATTCTCTTTCCTCTTCTGTTATGTCGTCTGGTG 1192406 30 100.0 37 TCGTCTGGTG .............................. CCTGGTAAGAGTTCTCTATACAGTTGTAATGCATCTT 1192473 30 100.0 36 AATGCATCTT .............................. GCTACAGCAACGAGGTCGCACGCTAGGGCTTTGACG 1192539 30 100.0 38 GGCTTTGACG .............................. TTTTTTCGGGGGCTTTCCCGCTACTCTGGGCTTTCATT 1192607 30 100.0 35 GGCTTTCATT .............................. AGACCACCCCCACCAAAATTGCAAGAGAAGCGCTT 1192672 30 100.0 37 AGAAGCGCTT .............................. CGGTGGGAATGCTGAGAGATTTGGGAAACGTTTTTGT 1192739 30 100.0 36 ACGTTTTTGT .............................. AGTGCGTTCTGAAAACCCGTGATGGATTCATTGTCG 1192805 30 100.0 36 TTCATTGTCG .............................. TCTTGCATGTCTCTGTCATAAAAATACGAAAAAAAC 1192871 30 100.0 36 CGAAAAAAAC .............................. CCATTATGCCATATTACTGCTGTGCTGTTTTATCGT 1192937 30 100.0 GTTTTATCGT .............................. CCGGCTCTAA ========== ====== ====== ====== ========== ============================== 14 30 36 GTTTCAATAATTCCTTAGAGGTATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [65.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [646,125] Score: 0.18/0.18 # # Final direction: R [0.45,4.87 Confidence: HIGH] >NC_013642 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1304393 30 96.7 36 AGGGAGGAGC ....................T......... TGTCGGCGTATTCGAAAAGGTCGTAGTCTCCTCTGA 1304459 30 100.0 36 TCTCCTCTGA .............................. GACGAAGGATTCGAGCTTTTCGTACAAGAGCAATTC 1304525 30 100.0 36 AGAGCAATTC .............................. AGACGTACATTTTCGATACAGCAGAAGGAAAAACAA 1304591 30 100.0 38 GGAAAAACAA .............................. TAGCTCATCAGGAGACATCTTCTTCAGGTCTTCGAATG 1304659 30 100.0 37 TCTTCGAATG .............................. ACAGAGGGCATGTTCGAACTTCAACTCGCAACAGAAC 1304726 30 100.0 GCAACAGAAC .............................. CCGTTGAGTT ========== ====== ====== ====== ========== ============================== 6 30 36 GTTTCCATACCTCTAAGGAAGTATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.40,-5.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [45,929] Score: 0.18/0.18 # # Final direction: F [4.5,1.23 Confidence: MEDIUM] >NC_013642 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1395574 30 100.0 37 AACTCAACGG .............................. TCTGTTCGCAACTGGCGGGCCTTGTCGGTGTACCACC 1395641 30 100.0 38 GTGTACCACC .............................. CTAAATGGGAAGAACTTGCTACAACAAGCAATATAACA 1395709 30 100.0 37 CAATATAACA .............................. AACCAGACCGCCTGGTGATAACCTACGAAAATACTAA 1395776 30 100.0 38 AAAATACTAA .............................. AAGGTAACAACTATTTTCCCATCTGGTCTAAACTCTAC 1395844 30 100.0 37 TAAACTCTAC .............................. GTGAAGCGCTCGAGAATGCGTGGTGTGAACAGGTTGG 1395911 30 100.0 35 AACAGGTTGG .............................. CAGAGAGGAGGTTGATGACGATGAGTGAACTGCTA 1395976 30 100.0 37 TGAACTGCTA .............................. GTGTCGTTTGCAAACTGCGACACAACACATTTGCAAA 1396043 30 100.0 36 CATTTGCAAA .............................. CTAAGTCCTTCCATAGAACCACTAAAATCGAAAACA 1396109 30 100.0 35 ATCGAAAACA .............................. ATCTATTTGCAGTTGCATTTGCAATTATGGCATAC 1396174 30 100.0 37 TATGGCATAC .............................. CAGTCTTGTGAGGACACAGACCCGTCAGGGGCTGTTT 1396241 30 100.0 40 GGGGCTGTTT .............................. TTGTGATTCCACCAACCACGCATATAACCTACGGGGAACA 1396311 30 100.0 37 ACGGGGAACA .............................. CTGGCAGGAATGTATACCCCTCCTCCCATAACTCCGG 1396378 30 100.0 35 ATAACTCCGG .............................. GAAACTTTTACCGTCATAAAAATCCCTCCTCCCTT 1396443 30 100.0 37 CTCCTCCCTT .............................. AATATTTCTCACCTTCCTTTTCAACAACCGATATGTC 1396510 30 100.0 36 CCGATATGTC .............................. CGGAATACGTTATGTCTAGTACCGACGCTATACCGC 1396576 30 100.0 37 GCTATACCGC .............................. AATATTTCTCACCTTCCTTTTCAACAACCGATATGTC 1396643 30 100.0 36 CCGATATGTC .............................. CGCCTTTGCTTGACAAAAGTCTTTCTGAAGCAAAAG 1396709 30 100.0 37 GAAGCAAAAG .............................. GAGTTTCCAGTAACTTTAACTCCATATATCGAGCTAT 1396776 30 100.0 37 ATCGAGCTAT .............................. GAATCAACAACAATTTCAAGCATTTTGATATCCGAGA 1396843 30 100.0 36 ATATCCGAGA .............................. CTACTTCGCAGCCGTGTATGGTAGAAAGCCGCAGCG 1396909 30 100.0 AGCCGCAGCG .............................. ATTCCGACGC ========== ====== ====== ====== ========== ============================== 21 30 36 GTTTCAATAATTCCTTAGAGGTATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [338,180] Score: 0/0.18 # # Final direction: R [0.27,4.87 Confidence: HIGH] >NC_013642 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 164700 30 100.0 39 AACTCAACGG .............................. TTTGCTGTTGCGATCCACACCAGGATGGCATGCCTTCTG 164769 30 100.0 37 ATGCCTTCTG .............................. AAATCTCGAAGTCATAAAACTCTTTCCGCCTGCAATA 164836 30 100.0 37 GCCTGCAATA .............................. AGGAATTCGTTCGCATCCTCGACAGCATCAAAGACCG 164903 30 100.0 38 TCAAAGACCG .............................. ACTGTTTTGAGGATATTCTCACTGTGTCTTCCCTTATC 164971 30 100.0 35 TTCCCTTATC .............................. GAAGTTCACAGAGCACAATTATTCATGTATGAGGA 165036 30 100.0 36 TGTATGAGGA .............................. AGTACAGAGAAAGTTGTTCACATGTGTACAAAAAAG 165102 30 100.0 35 TACAAAAAAG .............................. TAAGAAACTGCAACCGCTGTGGGTTGTTGCCTATT 165167 30 100.0 37 GTTGCCTATT .............................. AGAGTTCTACTTTCCTACCATCCTTCAAATAAACACT 165234 30 100.0 36 AATAAACACT .............................. TAGTGAAAAGAAAGAAAACCAGAATCTAGAAGGAGG 165300 30 100.0 36 TAGAAGGAGG .............................. CTATTTCTGTTCCTTTCAGATTTTCACAAATATAGT 165366 30 100.0 36 CAAATATAGT .............................. TGTGGGAAAGGAGGTGTAAACATGGCAGATATCCCC 165432 30 100.0 36 AGATATCCCC .............................. TGTGGGAAAGGAGGTGTAAACATGGCAGATATCCCC 165498 30 100.0 37 AGATATCCCC .............................. TTAGGTAATTGGGTAGGTAAAACGGTCACTTTTAGTG 165565 30 100.0 36 ACTTTTAGTG .............................. ATACAACAGGAAAGGTGGTGAAACGATGGAGGAAAA 165631 30 100.0 37 TGGAGGAAAA .............................. ACAACCGTATCGAGCTTCTTGAGTCCCCTGCAATCGA 165698 30 100.0 37 CTGCAATCGA .............................. GAAGGTTTGATGTAGAAGGTGGTGTGTACTGGAGAAT 165765 30 100.0 38 ACTGGAGAAT .............................. ATGAACTATAAAGTTTTTCCTCGATTTTTGGTTCGCTT 165833 30 100.0 36 TGGTTCGCTT .............................. AGGTTTCAGTAGAAGATGAAGACATAATAAGGCACA 165899 30 100.0 36 ATAAGGCACA .............................. CGTTATAATAGATTGTTACGCTTCTCCATTCCTTCA 165965 30 100.0 38 CATTCCTTCA .............................. TATGAGCCTTTTCGTATAATGCCTTTTCAATTGAGCGT 166033 30 100.0 AATTGAGCGT .............................. ACGATTTTTC ========== ====== ====== ====== ========== ============================== 21 30 36 GTTTCAATAGTTCCTTAGAGGTATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.80,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [628,159] Score: 0.18/0.18 # # Final direction: R [0.55,4.5 Confidence: HIGH] >NC_013716 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3203907 29 100.0 32 NNNNNNNNNN ...........................G. GACTCTAACGCACTCAATCCACTTAATCCCAG 3203968 29 100.0 32 NNNNNNNNNN ...........................G. AAACCACTGTAACCGCCTTCTAAGCGGTTTGC 3204029 29 100.0 32 NNNNNNNNNN ............................. TCATTCCGGCGCACCAACTGGAATTGCTGGAA 3204090 29 100.0 32 NNNNNNNNNN ............................. TAATAAACAAAAATCAACGCATCCTGGTGGCA 3204151 29 100.0 32 NNNNNNNNNN ............................. CAGCTGGCAAGAACAAAATCGACTGGAGCGAC 3204212 29 100.0 32 NNNNNNNNNN ............................. TTTCGGTGCCGGAATGACGTGTGAGCGTATTT 3204273 29 100.0 32 NNNNNNNNNN ............................. ATCTGTTTATAGCTGGCTATAAAATTTATAAA 3204334 29 100.0 32 NNNNNNNNNN ............................. TGGAAACGAACACCGCAGGGGTACGTGATTAC 3204395 29 100.0 32 NNNNNNNNNN ............................. ACTACGGTTGATTTATAAGAGCTACCATCCGG 3204456 29 100.0 32 NNNNNNNNNN ............................. TACGCGACATGTATTTTTTGCCGTGTTTCATG 3204517 29 100.0 32 NNNNNNNNNN ............................. TTCATGGGGGGTCACGACCCAGCCGCCCAGCT 3204578 29 100.0 32 NNNNNNNNNN ............................. TACCCCATTCAATACGGGCGATGCTGAATAGT 3204639 29 100.0 32 NNNNNNNNNN ............G................ TTAATAGCTGAAACAGGTAAACTCAACCGCGA 3204700 29 100.0 32 NNNNNNNNNN ............G................ GCGTAAACCCAGGGCTCGGCTTTTTTGTGAGT 3204761 29 100.0 32 NNNNNNNNNN ............T................ CCATTATCGAACGCCGCGCTGAACTCGCTGAT 3204822 29 100.0 32 NNNNNNNNNN .............T............... ACGCAACCATCATTGTTGCTGAGCACCACAAT 3204883 29 100.0 1 NNNNNNNNNN .......T....AG......A.AC.C.GT NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 17 29 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-13.40,-12.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [291,65] Score: 0.18/0.18 # # Final direction: F [2.1,0 Confidence: HIGH] >NC_013642 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 654148 30 100.0 30 AACTCAACGG .............................. ATGTTTTTGCGACATCGGGCGGCGGGCGGC 654208 30 100.0 37 GGCGGGCGGC .............................. AGTTTTATACACACATTCGGAAAATTTCTTGTTGCGC 654275 30 100.0 35 CTTGTTGCGC .............................. CCGGCGTCCTGAACAATTTTTGCCGACGCTTCAGA 654340 30 100.0 37 ACGCTTCAGA .............................. GGGCTGAAAAATTTCCCATTTCGTTTTATCACCTCCT 654407 30 100.0 37 ATCACCTCCT .............................. CAAGGGGAGGATGATACTGAATGGATAGGGGAACTCA 654474 30 96.7 36 GGGGAACTCA .........G.................... ACCATTCATCCATTACAACCTCTTTGCCTCTAATTT 654540 30 96.7 37 CCTCTAATTT .........G.................... AGCACTTTTACGTCCGGATTTGTGAACACGACTTCCT 654607 30 100.0 37 ACGACTTCCT .............................. TAAAGCATACGCTCCAAAACGTGAACAAATTCTCTCA 654674 30 100.0 35 AATTCTCTCA .............................. AGTTGGACGACGATCTTGTATTCATAAATGTTGTT 654739 30 96.7 AAATGTTGTT .........C.................... TAAGACATTCTTTCGCTAAGAAAATCTAATAGTTT ========== ====== ====== ====== ========== ============================== 10 30 35 GTTTCAATAATTCCTTAGAGGTATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [63.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [637,116] Score: 0.18/0.18 # # Final direction: R [0.59,5.14 Confidence: HIGH] >NC_013642 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 178293 30 90.0 37 AATCGGGTGG --..................G......... CTCTACCACGTTGCTTGGAAGAAGCGGAAGGTACTCC 178360 30 100.0 39 AAGGTACTCC .............................. CGGTTGGTACCTTGTCTGTTTCTACGATTTTGACTACGG 178429 30 100.0 37 TTGACTACGG .............................. ATTAATGGCCGTGTAAAAATGATTGCAGAGGCAACCG 178496 30 100.0 36 GAGGCAACCG .............................. AGACTTGGATTCACGTATTGTTTAATCTGCTGAAGC 178562 30 100.0 CTGCTGAAGC .............................. CCGTTGAG ========== ====== ====== ====== ========== ============================== 5 30 37 GTTTCCATACCTCTAAGGAACTATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [113,656] Score: 0.18/0.18 # # Final direction: F [4.5,1.23 Confidence: MEDIUM] >NC_013665 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 943478 19 100.0 20 NNNNNNNNNN ................... TACGTTAGAGGTCTGGGGCA 943517 19 100.0 20 NNNNNNNNNN ................... GATGTTGGCGCCCATGTCGG 943556 19 100.0 44 NNNNNNNNNN ................... TACGTTAGCGCCTTTGCCCATGCCTCCGACATTGGGCGTGGATA 943619 19 100.0 20 NNNNNNNNNN AT..C........T..... CACATTAGAGGTCTGGGGCA 943658 19 100.0 20 NNNNNNNNNN ................... TACGTTGGCTCCCATGTTAG 943697 19 100.0 1 NNNNNNNNNN C......A.....T..... NNNNNNNNNN ========== ====== ====== ====== ========== =================== 6 19 24 TGCCTTTGCCCATGCCGCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [36.7-40.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [267,343] Score: 0/0.18 # # Final direction: F [0.41,0.37 Confidence: LOW] >NC_013714 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1398223 36 100.0 28 TCGTCGATGT .................................... AACGGCAACGACTCATTATCCGGGTTGA 1398287 36 100.0 28 TCCGGGTTGA .................................... ATCGGAAGACATTAACGGACGTACCATT 1398351 36 100.0 28 ACGTACCATT .................................... TGGTATACGAGCGAATACAGTTCCTGCG 1398415 36 100.0 28 AGTTCCTGCG .................................... GCGCGGATCAGGTTTTCAAGGAATTCGT 1398479 36 100.0 28 AGGAATTCGT .................................... TGCCGCAAAGGCGTGATGTGGAAAAACA 1398543 36 100.0 28 TGGAAAAACA .................................... CATGTGCGCCAAGGAAGTGTACGTCGCC 1398607 36 100.0 28 GTACGTCGCC .................................... CAACCACGAGAGGAAAGATGCCGGGAAA 1398671 36 100.0 28 TGCCGGGAAA .................................... GAGACGACGTGCATTGCACTGCTCGCAA 1398735 36 100.0 28 CTGCTCGCAA .................................... TCGGAGCCGTGGCGAACACGCCGACAAG 1398799 36 100.0 28 CGCCGACAAG .................................... GTAGAGCACGCCGTCCACGTCCGACACG 1398863 36 100.0 28 GTCCGACACG .................................... TCCGCAACCCGCTCCACAGTCGCGAAGC 1398927 36 100.0 28 GTCGCGAAGC .................................... GTGCCAGCCGACCATAATGGCAAGGACT 1398991 36 100.0 28 GGCAAGGACT .................................... TCTCGCCGCGCAACAATCCGGCGATAAG 1399055 36 100.0 28 CGGCGATAAG .................................... GGCTTTCGTGTCGGGATGGTCGGGGCGC 1399119 36 100.0 28 GTCGGGGCGC .................................... CGAATGTCTTCGCAGAGGCTTTCGATGC 1399183 36 100.0 28 CTTTCGATGC .................................... GAAACGGAACCGCTCGTAGACGTATTTC 1399247 36 100.0 GACGTATTTC .................................... TATGTTTGTC ========== ====== ====== ====== ========== ==================================== 17 36 28 ACTGGGAATTAGCTTCTACCCTTCTTGATAAACTTG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [349,52] Score: 0.18/0.18 # # Final direction: R [0.18,0.64 Confidence: MEDIUM] >NC_013714 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================= ====== 1831390 33 100.0 34 NNNNNNNNNN TG..TT.AT.T.A.................... CACCAGGGCCGACGGGGGACCGGGAGCTCGGCGT 1831457 33 100.0 35 NNNNNNNNNN ................................. TGCATGAGCGCGTAGCAGCCCTCCAGGCTGTCCTC 1831525 33 100.0 34 NNNNNNNNNN ................................. TCGCCGAGAACGACAGCGGACTCTTCGATCGGAA 1831592 33 100.0 33 NNNNNNNNNN ..........................A...... AAGAGTGTAGTCGTTGCCGCATGCCACGTCGGT 1831658 33 100.0 35 NNNNNNNNNN ................................. ATTGCTCCCTGCGGATGTCGGTGTGCGCGTGCATA 1831726 33 100.0 35 NNNNNNNNNN T..CA............................ CCTCCATGCACTTTCGCCTTGACTTCACGGCTCAT 1831794 33 100.0 35 NNNNNNNNNN ................................. TGGGCTATCCTCAACCTCAGGGCAATGGAACATGA 1831862 33 100.0 33 NNNNNNNNNN ................................. GTGATGTTCTCCGCTATCTCACGTTCCAAATCG 1831928 33 100.0 33 NNNNNNNNNN ................................. GGCGCTGATGCCTCCGCCGATGTCGCCGGACAG 1831994 33 100.0 34 NNNNNNNNNN ................................. ATGTCTTGCTCCCCGTGCCGTTGACGCCGGTGAG 1832061 33 100.0 33 NNNNNNNNNN ................................. GCCGCCTGATGGCGGCGAATACCCGTCCTTGTC 1832127 33 100.0 33 NNNNNNNNNN ................................. GCATGTCATCGACTGCGACCTGCGTCATCACGT 1832193 33 100.0 33 NNNNNNNNNN ................................. TGATACGCCGCGGATGCCGACGCTTGCCGTGTA 1832259 33 100.0 33 NNNNNNNNNN ................................. TTTGCGGGTGATCTTGACCGTCGGCGCGAAAGC 1832325 33 100.0 33 NNNNNNNNNN ................................. TTGGTATTATTTCGTCCAGACGTGCGATTACGT 1832391 33 100.0 34 NNNNNNNNNN ................................. AGGCCACGAGACGCGCATGCAGGGACTTTGCCAT 1832458 33 100.0 34 NNNNNNNNNN ................................. CACGCCGACCTGATCACGGAACACTCTCGACGGA 1832525 33 100.0 35 NNNNNNNNNN ................................. ATAACCGTATGGTGGTTTGCCGACTATTTTGGCTT 1832593 33 100.0 35 NNNNNNNNNN ................................. TGGTCTGCTGGTTCGAAAGGTTCGTGCTGGCCAAT 1832661 33 100.0 35 NNNNNNNNNN ................................. CGGCGACAACGAGCCACTGTCCGGCATCAGTTATT 1832729 33 100.0 33 NNNNNNNNNN ................................. GAAATGTATCTCCGTAGTTCGACCTGTCCGGAG 1832795 33 100.0 33 NNNNNNNNNN ................................. GACGTGGACTCGACGCAGACGCAAGACCAACCA 1832861 33 100.0 34 NNNNNNNNNN ................................. CCAGCTTGTGGACATCAGCGCCCGAGCCGTCCAC 1832928 33 100.0 33 NNNNNNNNNN ................................. ATGTTCGTCTTTTACCTGGGCCGCACCATGCGC 1832994 33 100.0 34 NNNNNNNNNN ................................. GGGTACGCACTCTTTCGAGCCGATTTGCGGATAG 1833061 33 100.0 34 NNNNNNNNNN ................................. GGTGGCGGCCGCACCGATCGCATTCGCCGCACCC 1833128 33 100.0 34 NNNNNNNNNN ................................. TTGTTCCGTCTGCTCATGTTCACACCTTTCATAA 1833195 33 100.0 34 NNNNNNNNNN ................................. GGGGATAATATGACCAACGTTCCGCAAATGGTTG 1833262 33 100.0 34 NNNNNNNNNN ................................. CGGCATCTGCCTCATCGAATTGACATCCATCCTG 1833329 33 100.0 33 NNNNNNNNNN ................................. GGCGAACAGGGTCGCGCTCACCTGTTCGTTGGT 1833395 33 100.0 34 NNNNNNNNNN ................................. CCTACGCCGATTTCATGTCGCGTGAGGTCAAGGC 1833462 33 100.0 36 NNNNNNNNNN ................................. GCCACCACGCAAGACTCGACAGCCACCGCAAGCAGT 1833531 33 100.0 33 NNNNNNNNNN ................................. GGGGAGGCGACCATGGCGTTACGGACGCTCAAC 1833597 33 100.0 33 NNNNNNNNNN ................................. GTAGCCGAGTACGGTAAGCGTATCACGGTATGA 1833663 33 100.0 34 NNNNNNNNNN ................................. ACGCGACCACCGACGCCATGGTCAGCCTGTTGAG 1833730 33 100.0 34 NNNNNNNNNN ................................. CCGGATCCTGACCCACATGCAAACCGAAATCGAG 1833797 33 100.0 33 NNNNNNNNNN ................................. CAACCCACGCGATTCCAGGCATATGGCCAGCAG 1833863 33 100.0 35 NNNNNNNNNN ................................. TGGCTGATCAACGACCCCGTAGCCTACGATAAGGT 1833931 33 100.0 34 NNNNNNNNNN ................................. CCAATTCGCCGGTCAATCCGATTGACGGCACCAG 1833998 33 100.0 33 NNNNNNNNNN ................................. CAACTTCCATATCCCGGGCAGATACCGGCATTT 1834064 33 100.0 34 NNNNNNNNNN ................................. TCTACAAGCGCAAGCAGGACTGCAAACGCATGGT 1834131 33 100.0 34 NNNNNNNNNN ................................. TAGTAGTAGTAGGAGTAGTAGTAATAAGAAAGAA 1834198 33 100.0 34 NNNNNNNNNN ................................. TTGGCGGAGGCTTCCACTTCCGCATCGGTGACGG 1834265 33 100.0 33 NNNNNNNNNN ................................. GCAATCATCTTGCACCTTAAACACGTATTTGGT 1834331 33 100.0 34 NNNNNNNNNN ................................. CGGCCTCCGCCGATGCTATTCGTTCGCGTGAGGC 1834398 33 100.0 33 NNNNNNNNNN ................................. TCGACTGCACATGATGGCGGCGCGTAAGGTTGC 1834464 33 100.0 33 NNNNNNNNNN ................................. GAAGCTGGTCCGGTCCACGTCGAATTTCACATC 1834530 33 100.0 35 NNNNNNNNNN ................................. GTACAATACTTTTGATTTTTTAGGCTCCAAATCAT 1834598 33 100.0 33 NNNNNNNNNN ................................. TGTCGTGTTGAGCAGTTTCGGCAATGGGTTTGT 1834664 33 100.0 33 NNNNNNNNNN ................................. GGGTGCGACGGCCTATCTGACGGCGTACACGCC 1834730 33 100.0 35 NNNNNNNNNN ................................. CCACCGCCGATAAGACTGATGATGACCGCCGACCA 1834798 33 100.0 34 NNNNNNNNNN ................................. TTTTATATACGACGCGCCAGTTGCTCGTGGATGT 1834865 33 100.0 34 NNNNNNNNNN ................................. TTTTTAAGGCGGTTATATCATGGCCCAGCATGTC 1834932 33 100.0 34 NNNNNNNNNN ................................. GGTCGCATACGTCTTGGCAACTTCACTCTTAATG 1834999 33 100.0 34 NNNNNNNNNN ................................. ATCATCCAACGACGAATGCCAACACAAGGCAATC 1835066 33 100.0 35 NNNNNNNNNN ................................. GGGTTACTGTGCATGCAAGCGCAAGCCGTCGCAGT 1835134 33 100.0 34 NNNNNNNNNN ...................C............. GGGAACTGCCCATCGACTGGGCCTACCGGGGTGA 1835201 33 100.0 34 NNNNNNNNNN ................................. AAATGGCGTGGGAAGAGCTCGGCTGGGGGCCGGA 1835268 33 100.0 34 NNNNNNNNNN ................................. TGACGCGGCCACGGATCCTCATCTCCCAATCGGG 1835335 33 100.0 32 NNNNNNNNNN ................................. ATGAGCATCTGGCCGTCCGCGTCGCCGAGCTG 1835400 33 100.0 34 NNNNNNNNNN ................................. ACGGATTAGGGGTGATAGACCCCCTATGCTTGTA 1835467 33 100.0 34 NNNNNNNNNN ................................. ATTCGAGCGTATTGGCAAAACGCTGGATGACTTG 1835534 33 100.0 34 NNNNNNNNNN ................................. CGGACTCGGCATCCCGAACCTGCCATTCAAAGCG 1835601 33 100.0 34 NNNNNNNNNN ................................. TGGTGTGGGCATTGACATAATCGCATGTCTGGAT 1835668 33 100.0 34 NNNNNNNNNN ................................. TGGCGCTGATGCCGCCGCCGATGTCGCCGGACAA 1835735 33 100.0 35 NNNNNNNNNN ................................. TCGGTGATCCATTCCACGTGCGAGCTGCCGTCGTT 1835803 33 100.0 34 NNNNNNNNNN ................................. CGGCTGATCCACGAATATGCGCGTGCTGCAGAGA 1835870 33 100.0 33 NNNNNNNNNN ................................. GGATTCGAAGACTACTACGAGCAGCTCCTCCGA 1835936 33 100.0 34 NNNNNNNNNN ................................. CTAACGTGTCCTCCATCACTTACAGGGACTTTAT 1836003 33 100.0 33 NNNNNNNNNN ................................. GGCAGACTCAGGGCACCCTATCGGCATCGAATG 1836069 33 100.0 33 NNNNNNNNNN ................................. CCACGCGCACCGTGGCTCGTACCGCTTCCCCGA 1836135 33 100.0 35 NNNNNNNNNN ................................. GCGGCATTTGCCTCATCGAGCTCACCTCAATCCTT 1836203 33 100.0 34 NNNNNNNNNN ................................. GGTGCTGTTCCACGTCGGTGCGGCGCAAATAAAT 1836270 33 100.0 33 NNNNNNNNNN ................................. CCAAACGATTCGGGCATGGTCGCGGTCGAGGAC 1836336 33 100.0 34 NNNNNNNNNN ................................. ACGCTTCATCCGACAGCACGTTCGTCATTTGCAG 1836403 33 100.0 33 NNNNNNNNNN ................................. TTCCCGTCATGGTACGGGCGGTGGAAGTGTCAT 1836469 33 100.0 33 NNNNNNNNNN ................................. TGTATACGGTAGCCATTGTTTAGTCCTTTTCTC 1836535 33 100.0 33 NNNNNNNNNN ................................. CTGTCCGCCAGCCGCGGCCGGAGTACGGTTAAG 1836601 33 100.0 35 NNNNNNNNNN ................................. TGTAAAACGTTGCATCATCCATCGTGACCTTCTGC 1836669 33 100.0 33 NNNNNNNNNN ................................. CGGATATTGGCGTGTCCACATGAACAACGACTT 1836735 33 100.0 1 NNNNNNNNNN ................................. NNNNNNNNNN ========== ====== ====== ====== ========== ================================= 81 33 33 ATTTCAATCCACGCTCTCCGTGAGGAGAGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [8,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [36.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [559,548] Score: 0/0.18 # # Final direction: R [0.74,5.18 Confidence: HIGH] >NC_013714 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================= ====== 1831457 33 100.0 35 AGCTCGGCGT ................................. TGCATGAGCGCGTAGCAGCCCTCCAGGCTGTCCTC 1831525 33 100.0 34 GGCTGTCCTC ................................. TCGCCGAGAACGACAGCGGACTCTTCGATCGGAA 1831592 33 97.0 33 TCGATCGGAA ..........................A...... AAGAGTGTAGTCGTTGCCGCATGCCACGTCGGT 1831658 33 100.0 40 CCACGTCGGT ................................. ATTGCTCCCTGCGGATGTCGGTGTGCGCGTGCATATTTCA 1831731 33 84.8 35 GCATATTTCA -----............................ CCTCCATGCACTTTCGCCTTGACTTCACGGCTCAT 1831799 33 100.0 35 CACGGCTCAT ................................. TGGGCTATCCTCAACCTCAGGGCAATGGAACATGA 1831867 33 100.0 33 TGGAACATGA ................................. GTGATGTTCTCCGCTATCTCACGTTCCAAATCG 1831933 33 100.0 33 TTCCAAATCG ................................. GGCGCTGATGCCTCCGCCGATGTCGCCGGACAG 1831999 33 100.0 34 CGCCGGACAG ................................. ATGTCTTGCTCCCCGTGCCGTTGACGCCGGTGAG 1832066 33 100.0 33 CGCCGGTGAG ................................. GCCGCCTGATGGCGGCGAATACCCGTCCTTGTC 1832132 33 100.0 33 CGTCCTTGTC ................................. GCATGTCATCGACTGCGACCTGCGTCATCACGT 1832198 33 100.0 33 GTCATCACGT ................................. TGATACGCCGCGGATGCCGACGCTTGCCGTGTA 1832264 33 100.0 33 TTGCCGTGTA ................................. TTTGCGGGTGATCTTGACCGTCGGCGCGAAAGC 1832330 33 100.0 33 GCGCGAAAGC ................................. TTGGTATTATTTCGTCCAGACGTGCGATTACGT 1832396 33 100.0 34 GCGATTACGT ................................. AGGCCACGAGACGCGCATGCAGGGACTTTGCCAT 1832463 33 100.0 34 ACTTTGCCAT ................................. CACGCCGACCTGATCACGGAACACTCTCGACGGA 1832530 33 100.0 35 TCTCGACGGA ................................. ATAACCGTATGGTGGTTTGCCGACTATTTTGGCTT 1832598 33 100.0 35 ATTTTGGCTT ................................. TGGTCTGCTGGTTCGAAAGGTTCGTGCTGGCCAAT 1832666 33 100.0 35 GCTGGCCAAT ................................. CGGCGACAACGAGCCACTGTCCGGCATCAGTTATT 1832734 33 100.0 33 ATCAGTTATT ................................. GAAATGTATCTCCGTAGTTCGACCTGTCCGGAG 1832800 33 100.0 33 CTGTCCGGAG ................................. GACGTGGACTCGACGCAGACGCAAGACCAACCA 1832866 33 100.0 34 AGACCAACCA ................................. CCAGCTTGTGGACATCAGCGCCCGAGCCGTCCAC 1832933 33 100.0 33 AGCCGTCCAC ................................. ATGTTCGTCTTTTACCTGGGCCGCACCATGCGC 1832999 33 100.0 34 CACCATGCGC ................................. GGGTACGCACTCTTTCGAGCCGATTTGCGGATAG 1833066 33 100.0 34 TTGCGGATAG ................................. GGTGGCGGCCGCACCGATCGCATTCGCCGCACCC 1833133 33 100.0 34 CGCCGCACCC ................................. TTGTTCCGTCTGCTCATGTTCACACCTTTCATAA 1833200 33 100.0 34 CCTTTCATAA ................................. GGGGATAATATGACCAACGTTCCGCAAATGGTTG 1833267 33 100.0 34 CAAATGGTTG ................................. CGGCATCTGCCTCATCGAATTGACATCCATCCTG 1833334 33 100.0 33 ATCCATCCTG ................................. GGCGAACAGGGTCGCGCTCACCTGTTCGTTGGT 1833400 33 100.0 34 GTTCGTTGGT ................................. CCTACGCCGATTTCATGTCGCGTGAGGTCAAGGC 1833467 33 100.0 36 AGGTCAAGGC ................................. GCCACCACGCAAGACTCGACAGCCACCGCAAGCAGT 1833536 33 100.0 33 CGCAAGCAGT ................................. GGGGAGGCGACCATGGCGTTACGGACGCTCAAC 1833602 33 100.0 33 GACGCTCAAC ................................. GTAGCCGAGTACGGTAAGCGTATCACGGTATGA 1833668 33 100.0 34 CACGGTATGA ................................. ACGCGACCACCGACGCCATGGTCAGCCTGTTGAG 1833735 33 100.0 34 GCCTGTTGAG ................................. CCGGATCCTGACCCACATGCAAACCGAAATCGAG 1833802 33 100.0 33 CGAAATCGAG ................................. CAACCCACGCGATTCCAGGCATATGGCCAGCAG 1833868 33 100.0 35 TGGCCAGCAG ................................. TGGCTGATCAACGACCCCGTAGCCTACGATAAGGT 1833936 33 100.0 34 ACGATAAGGT ................................. CCAATTCGCCGGTCAATCCGATTGACGGCACCAG 1834003 33 100.0 33 ACGGCACCAG ................................. CAACTTCCATATCCCGGGCAGATACCGGCATTT 1834069 33 100.0 34 ACCGGCATTT ................................. TCTACAAGCGCAAGCAGGACTGCAAACGCATGGT 1834136 33 100.0 34 AACGCATGGT ................................. TAGTAGTAGTAGGAGTAGTAGTAATAAGAAAGAA 1834203 33 100.0 34 TAAGAAAGAA ................................. TTGGCGGAGGCTTCCACTTCCGCATCGGTGACGG 1834270 33 100.0 33 TCGGTGACGG ................................. GCAATCATCTTGCACCTTAAACACGTATTTGGT 1834336 33 100.0 34 CGTATTTGGT ................................. CGGCCTCCGCCGATGCTATTCGTTCGCGTGAGGC 1834403 33 100.0 33 CGCGTGAGGC ................................. TCGACTGCACATGATGGCGGCGCGTAAGGTTGC 1834469 33 100.0 33 GTAAGGTTGC ................................. GAAGCTGGTCCGGTCCACGTCGAATTTCACATC 1834535 33 100.0 35 ATTTCACATC ................................. GTACAATACTTTTGATTTTTTAGGCTCCAAATCAT 1834603 33 100.0 33 TCCAAATCAT ................................. TGTCGTGTTGAGCAGTTTCGGCAATGGGTTTGT 1834669 33 100.0 33 ATGGGTTTGT ................................. GGGTGCGACGGCCTATCTGACGGCGTACACGCC 1834735 33 100.0 35 CGTACACGCC ................................. CCACCGCCGATAAGACTGATGATGACCGCCGACCA 1834803 33 100.0 34 CCGCCGACCA ................................. TTTTATATACGACGCGCCAGTTGCTCGTGGATGT 1834870 33 100.0 34 TCGTGGATGT ................................. TTTTTAAGGCGGTTATATCATGGCCCAGCATGTC 1834937 33 100.0 34 CCAGCATGTC ................................. GGTCGCATACGTCTTGGCAACTTCACTCTTAATG 1835004 33 100.0 34 ACTCTTAATG ................................. ATCATCCAACGACGAATGCCAACACAAGGCAATC 1835071 33 100.0 35 CAAGGCAATC ................................. GGGTTACTGTGCATGCAAGCGCAAGCCGTCGCAGT 1835139 33 97.0 34 CCGTCGCAGT ...................C............. GGGAACTGCCCATCGACTGGGCCTACCGGGGTGA 1835206 33 100.0 34 ACCGGGGTGA ................................. AAATGGCGTGGGAAGAGCTCGGCTGGGGGCCGGA 1835273 33 100.0 34 GGGGGCCGGA ................................. TGACGCGGCCACGGATCCTCATCTCCCAATCGGG 1835340 33 100.0 32 CCCAATCGGG ................................. ATGAGCATCTGGCCGTCCGCGTCGCCGAGCTG 1835405 33 100.0 34 CGCCGAGCTG ................................. ACGGATTAGGGGTGATAGACCCCCTATGCTTGTA 1835472 33 100.0 34 TATGCTTGTA ................................. ATTCGAGCGTATTGGCAAAACGCTGGATGACTTG 1835539 33 100.0 34 GGATGACTTG ................................. CGGACTCGGCATCCCGAACCTGCCATTCAAAGCG 1835606 33 100.0 34 ATTCAAAGCG ................................. TGGTGTGGGCATTGACATAATCGCATGTCTGGAT 1835673 33 100.0 34 ATGTCTGGAT ................................. TGGCGCTGATGCCGCCGCCGATGTCGCCGGACAA 1835740 33 100.0 35 CGCCGGACAA ................................. TCGGTGATCCATTCCACGTGCGAGCTGCCGTCGTT 1835808 33 100.0 34 TGCCGTCGTT ................................. CGGCTGATCCACGAATATGCGCGTGCTGCAGAGA 1835875 33 100.0 33 GCTGCAGAGA ................................. GGATTCGAAGACTACTACGAGCAGCTCCTCCGA 1835941 33 100.0 34 GCTCCTCCGA ................................. CTAACGTGTCCTCCATCACTTACAGGGACTTTAT 1836008 33 100.0 33 GGGACTTTAT ................................. GGCAGACTCAGGGCACCCTATCGGCATCGAATG 1836074 33 100.0 33 GCATCGAATG ................................. CCACGCGCACCGTGGCTCGTACCGCTTCCCCGA 1836140 33 100.0 35 GCTTCCCCGA ................................. GCGGCATTTGCCTCATCGAGCTCACCTCAATCCTT 1836208 33 100.0 34 CTCAATCCTT ................................. GGTGCTGTTCCACGTCGGTGCGGCGCAAATAAAT 1836275 33 100.0 33 GCAAATAAAT ................................. CCAAACGATTCGGGCATGGTCGCGGTCGAGGAC 1836341 33 100.0 34 GGTCGAGGAC ................................. ACGCTTCATCCGACAGCACGTTCGTCATTTGCAG 1836408 33 100.0 33 TCATTTGCAG ................................. TTCCCGTCATGGTACGGGCGGTGGAAGTGTCAT 1836474 33 100.0 33 GAAGTGTCAT ................................. TGTATACGGTAGCCATTGTTTAGTCCTTTTCTC 1836540 33 100.0 33 TCCTTTTCTC ................................. CTGTCCGCCAGCCGCGGCCGGAGTACGGTTAAG 1836606 33 100.0 35 TACGGTTAAG ................................. TGTAAAACGTTGCATCATCCATCGTGACCTTCTGC 1836674 33 100.0 33 GACCTTCTGC ................................. CGGATATTGGCGTGTCCACATGAACAACGACTT 1836740 33 100.0 ACAACGACTT ................................. TGCACAGATG ========== ====== ====== ====== ========== ================================= 80 33 33 ATTTCAATCCACGCTCTCCGTGAGGAGAGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [8,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [30.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [68,543] Score: 0.18/0.18 # # Final direction: R [0.74,5.36 Confidence: HIGH] >NC_013715 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 1379311 19 78.9 58 CGCAAACCCA ............----... CCACTAGAAAGCGAAGAAATCCGCAAGGGGGTTCTTTTCCTTCACACCGCCGACAGTG 1379388 19 78.9 57 GCCGACAGTG ............----... CTACGAAAAAGTAGGGAAATGTAGGTCGTATGCCACAGCACCGCCACGTCATCGAGC 1379464 19 94.7 54 GTCATCGAGC ...............C... AAAAAGGAAGGGAAATTCGAAGCTATCGGAGCCGTCGTAGAAGACACAATCAAG 1379537 19 100.0 54 CACAATCAAG ................... GAAAAGGAAGGGAGATTGTCGGGGATTTGGGGTGCCCCGTAGAGGGTGACGGCC 1379610 19 94.7 57 GGTGACGGCC ...............C... GAAAAGGAAGGGAAATCGCCGCCTCCTGGACGAAGGCATGCCGGGCCAGTGCCGTCG 1379686 19 100.0 54 AGTGCCGTCG ................... GAAAAGGAAGAGAAATTGAGCTTCCACGCGACATACGAGGTGCACTCACCAAAG 1379759 19 100.0 CTCACCAAAG ................... CAAAAGG ========== ====== ====== ====== ========== =================== 7 19 55 CCTCAATGAAAGCCCTTCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-1] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [346,2854] Score: 0.18/0.18 # # Final direction: F [0.37,0.18 Confidence: MEDIUM] >NC_013715 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================== ====== 1380329 34 100.0 39 NNNNNNNNNN .......A....C..................... TACCCCAAAAACAACCCAACAACCCGCGCATGGGTACGG 1380402 34 100.0 41 NNNNNNNNNN ............C..T.................. CCCCGTCATGGAAGACCACGCGCGGGTGTGCAGCGTTGAAG 1380477 34 100.0 40 NNNNNNNNNN ............C......A.....A.G..A..T CTTGAACGCGGCCGCATAGATCAGCGAGGCCACGGGCTTG 1380551 34 100.0 40 NNNNNNNNNN ............C..................... TTGAGTCTTCACCATTTCGCCGCCGCTAATAAACGGCTTG 1380625 34 100.0 37 NNNNNNNNNN ............C..TC..A.T.G.A.G..A..T TTTGGTGCGGGTGTGCTCTCCGCGGCGGCCGTCCCAG 1380696 34 100.0 37 NNNNNNNNNN ............C......A.............. TTGGAGGGCCTCGCTAACGCTGGTTCGACGGACACGG 1380767 34 100.0 39 NNNNNNNNNN ............C..TC..A.............T TGGAGTGCCTAGGCTGAGGATTTGAAAGAGCCTTCTGGG 1380840 34 100.0 38 NNNNNNNNNN ......A.....C.........T.......A... TGAACCAGACGTAGCCGTTGTTAGCGACATAGCCGTCG 1380912 34 100.0 39 NNNNNNNNNN ....G.......C..T....G............. ATGACCTGGTCAGCAGGAATAGTGCGGGTGCCGTAGGCG 1380985 34 100.0 41 NNNNNNNNNN ............C..TC................. TCCGGGGCGGATACTGAGCGGCCCGGCCTTGGCACCGTTGG 1381060 34 100.0 37 NNNNNNNNNN ............C..T...C.............. GAGCTGGTGGGTTGCCAGGGTGGCATGCACAGTCGCG 1381131 34 100.0 39 NNNNNNNNNN ...........CC..T...A....A.G.A..G.. ATCGCGCCGCTGACGGACGATAACGGCAACCCGATCGAG 1381204 34 100.0 40 NNNNNNNNNN ............C......A.G...A.G..A... TTCGCCGTTGCGCTCAGGGAAATAATAGCGGAACGCCTCG 1381278 34 100.0 35 NNNNNNNNNN ............C..T...C.G............ TTGGCCCGACAATTGAGAACCTGCGGGTTTGCGGG 1381347 34 100.0 39 NNNNNNNNNN ............C..T...A.............. TCCTGGGCGACCAAGATCTTGTCCGCAGGCTGCTGCTTG 1381420 34 100.0 39 NNNNNNNNNN ...................C.............. TCTGCGTTGGCTCGTGAGGGCATGCTCGGCGAATCTGAC 1381493 34 100.0 39 NNNNNNNNNN .................................. TGTAAAGTGCTTGACGCGCCCCGCGCGGGTGCTATGAGC 1381566 34 100.0 37 NNNNNNNNNN .................................. TTTACTAGATATTTTTCTCAGCCGCTTTGTTTTGCGC 1381637 34 100.0 40 NNNNNNNNNN .................................. TCCAGACAGAGACCTCAGACATGCCGCCACTGCGAAGTAC 1381711 34 100.0 42 NNNNNNNNNN .................................. TGGTCTAGAGTTCGCCACTCGATTTGTAGTACGCATGTGGGC 1381787 34 100.0 41 NNNNNNNNNN .................................. TGGTCTAGAGTTCGCCACTCGATTTGTATACGCATGTGGGC 1381862 34 100.0 38 NNNNNNNNNN .................................. TACCAACACCACCAGCGCCAACAAGGAGTCTGCTAACC 1381934 34 100.0 36 NNNNNNNNNN .................................. TTAGCGGTCAATGCGGCATCATTCAAGCTGATACCC 1382004 34 100.0 38 NNNNNNNNNN .................................. TTATTGCGTCGAGGTGGTCGGCGGTGAATGAGAGCGGC 1382076 34 100.0 38 NNNNNNNNNN .................................. TTCAGCCCCCACTAACCGACCCGCTCTCCACCTACACC 1382148 34 100.0 36 NNNNNNNNNN .................................. TCTAGCCAAGAAGGTGGCTAAGCTTGAATCTGAGCC 1382218 34 100.0 38 NNNNNNNNNN .................................. TAGCGCAATCTCTGAACGTTCATCCATGCCAGAGCCGC 1382290 34 100.0 39 NNNNNNNNNN .................................. TCCTTCGATGCGAGAGTGTCGCCGGTAATCGCGTTCGGC 1382363 34 100.0 1 NNNNNNNNNN .................................. NNNNNNNNNN ========== ====== ====== ====== ========== ================================== 29 34 38 CCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.94%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.50,-5.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [39-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [58.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1364,235] Score: 0.18/0.18 # # Final direction: R [0.45,0.78 Confidence: LOW] >NC_013715 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 1381278 35 88.6 34 GAACGCCTCG ............C..T...C.G............. TGGCCCGACAATTGAGAACCTGCGGGTTTGCGGG 1381347 35 91.4 38 GGTTTGCGGG ............C..T...A............... CCTGGGCGACCAAGATCTTGTCCGCAGGCTGCTGCTTG 1381420 35 97.1 38 CTGCTGCTTG ...................C............... CTGCGTTGGCTCGTGAGGGCATGCTCGGCGAATCTGAC 1381493 35 100.0 38 CGAATCTGAC ................................... GTAAAGTGCTTGACGCGCCCCGCGCGGGTGCTATGAGC 1381566 35 100.0 36 TGCTATGAGC ................................... TTACTAGATATTTTTCTCAGCCGCTTTGTTTTGCGC 1381637 35 100.0 39 TGTTTTGCGC ................................... CCAGACAGAGACCTCAGACATGCCGCCACTGCGAAGTAC 1381711 35 100.0 41 TGCGAAGTAC ................................... GGTCTAGAGTTCGCCACTCGATTTGTAGTACGCATGTGGGC 1381787 35 100.0 40 GCATGTGGGC ................................... GGTCTAGAGTTCGCCACTCGATTTGTATACGCATGTGGGC 1381862 35 100.0 37 GCATGTGGGC ................................... ACCAACACCACCAGCGCCAACAAGGAGTCTGCTAACC 1381934 35 100.0 35 TCTGCTAACC ................................... TAGCGGTCAATGCGGCATCATTCAAGCTGATACCC 1382004 35 100.0 37 GCTGATACCC ................................... TATTGCGTCGAGGTGGTCGGCGGTGAATGAGAGCGGC 1382076 35 100.0 37 TGAGAGCGGC ................................... TCAGCCCCCACTAACCGACCCGCTCTCCACCTACACC 1382148 35 100.0 35 CACCTACACC ................................... CTAGCCAAGAAGGTGGCTAAGCTTGAATCTGAGCC 1382218 35 100.0 37 AATCTGAGCC ................................... AGCGCAATCTCTGAACGTTCATCCATGCCAGAGCCGC 1382290 35 100.0 38 CCAGAGCCGC ................................... CCTTCGATGCGAGAGTGTCGCCGGTAATCGCGTTCGGC 1382363 35 100.0 CGCGTTCGGC ................................... AGCTACCCGA ========== ====== ====== ====== ========== =================================== 16 35 37 CCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.29%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.40,-8.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [46.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2313,234] Score: 0.18/0.18 # # Final direction: R [0.45,0.78 Confidence: LOW] >NC_013722 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 3423446 31 100.0 33 NNNNNNNNNN ............................... CGCATTGACTCCCAGCGCGCATACGGCACTGCA 3423510 31 100.0 34 NNNNNNNNNN ............................... CTCGCGGGATACGCCGGAATAGCCAAACCCCTTG 3423575 31 100.0 33 NNNNNNNNNN ............................... TGGATCCGCCGCATGTCCGAACAGCACGGCATG 3423639 31 100.0 35 NNNNNNNNNN ............................... TTGGTAGCTGCGCGAGACCTGTTCGAGCACCATGC 3423705 31 100.0 35 NNNNNNNNNN ............................... TTCATAACGGGGATGCTCCTTTCAGTGTCAGATGG 3423771 31 100.0 35 NNNNNNNNNN ............................... CGCAATGATCGTGCGGACGCTGAGGCGATGCAGAG 3423837 31 100.0 36 NNNNNNNNNN ............................... TTGCGCGAGCTAGCCTTCTTGGCGCTCGCGCTTGGG 3423904 31 100.0 37 NNNNNNNNNN ............................... GTTTGTCGTGCCAGCAACGCTTGGCACTCGGTACGGG 3423972 31 100.0 36 NNNNNNNNNN ............................... TTGCACAGGGGCATTCGCCCCGACAATTTCATCGAG 3424039 31 100.0 35 NNNNNNNNNN ............................... AGCCGTAAGCTGCGCGCCGTCGTAGTAGTCGCGAG 3424105 31 100.0 34 NNNNNNNNNN ............................... TACGACGTATTGCCTTCCCGACTCAATCTGTACG 3424170 31 100.0 35 NNNNNNNNNN ............................... GACCTTGCTGGCGTACTCATAGAGATTGATGGTCG 3424236 31 100.0 35 NNNNNNNNNN ............................... GACTTCATCCTGATTGCCCAGCAGGGTCTGCAACT 3424302 31 100.0 35 NNNNNNNNNN ............................... GGTATACAGCTGCGCCGTTGGCATCTTGGGAGTGG 3424368 31 100.0 35 NNNNNNNNNN ............................... TTGGAAGTGCTCGGTATCGCCAGCGGCGAGGGCCT 3424434 31 100.0 34 NNNNNNNNNN ............................... TCCTAACCCTGTTGCGTCCGGACGTGATCTGACG 3424499 31 100.0 37 NNNNNNNNNN ............................... AAGCGATCCGATGCGGTCGGCCATGCCGGCCTTGACG 3424567 31 100.0 35 NNNNNNNNNN ............................... CGACCGAGACCGACTCGCCTTCCAGCCCGCGCAGG 3424633 31 100.0 34 NNNNNNNNNN ............................... GTGCTCCTCGATGACGGATCCGCAGTCGCTGCAG 3424698 31 100.0 34 NNNNNNNNNN ............................... TCCTAACCCTGTTGCGTCCGGACGTGATCTGACG 3424763 31 100.0 38 NNNNNNNNNN ............................... GCATGTGCGAATGCACGACGGTCGGGGCCGAATGATGG 3424832 31 100.0 36 NNNNNNNNNN ............................... GCCTAGACCTCGGCAAAGAACCCGCCTATGAGCCGG 3424899 31 100.0 36 NNNNNNNNNN ............................... CTTTGGAAATGCTCACCCACCCCATGCGCTATCTGG 3424966 31 100.0 35 NNNNNNNNNN ............................... ATCCTGGCTATTGTCGCAATTGTCAAGGGCGGCGC 3425032 31 100.0 35 NNNNNNNNNN ............................... GAGTTCAGCCGCGGCCCGCTGGTCTGGCGTTACAG 3425098 31 100.0 34 NNNNNNNNNN ............................... TCATCTGACTCTCCCTCACTGTTCAAATGGGCAA 3425163 31 100.0 34 NNNNNNNNNN ............................... GTACTGATTCCATCCGGGCTTGCTCCTCGTGGGC 3425228 31 100.0 36 NNNNNNNNNN ............................... AACGGTAGGAAGGCCGCTGAGGACTGGGCGCGCGCG 3425295 31 100.0 38 NNNNNNNNNN ........T...................... GATTTCGTCCTCTCCGTAGCTGTATGGGCTGATGCCAG 3425364 31 100.0 37 NNNNNNNNNN ............................... ATGTACTACGTACACGGGAGGGCCATCGCATGAGCCG 3425432 31 100.0 37 NNNNNNNNNN ............................... GCCAGTCAACGTGGAGAGATTCACGGCAGCGCGGCTT 3425500 31 100.0 37 NNNNNNNNNN ............................... GGCACAAGCGTCCAGCCATCCGGCACACCCTGCAGGC 3425568 31 100.0 34 NNNNNNNNNN ............................... CTTGTCATTTCGCACGCTGGTGGTGGCTAGGCTA 3425633 31 100.0 1 NNNNNNNNNN ............A......C..T........ NNNNNNNNNN ========== ====== ====== ====== ========== =============================== 34 31 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [5,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-6.90,-7.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [190,14] Score: 0.18/0.18 # # Final direction: F [5.59,0.37 Confidence: HIGH] >NC_013722 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3613186 28 100.0 32 GGCTTGTGGC ............................ ATTGCAAACTATCAAAGCGAGTTTTCTTCTTA 3613246 28 100.0 32 TTTCTTCTTA ............................ ATCGTACCTCGCTCAGGAGGTCGGCGATGCGA 3613306 28 100.0 32 GGCGATGCGA ............................ TACGCAGACTGGGACGCGGCGTTCATGGAGGC 3613366 28 100.0 32 TCATGGAGGC ............................ TCGATAAGCGCACGGCCAATGCCGGTGCTCTG 3613426 28 100.0 32 CGGTGCTCTG ............................ CAGCCCGCAACAGATCGAGGCCAACACGAAGG 3613486 28 100.0 32 AACACGAAGG ............................ TCGCTGCGCCATAGATTCCGGCCGTCCACGTC 3613546 28 100.0 32 CGTCCACGTC ............................ TCCCATGCTAATCAGTCCCGTCTATTACCCAC 3613606 28 100.0 32 TATTACCCAC ............................ AAAGAGGATTACCGATGGCTCACGCACCGGGA 3613666 28 100.0 32 CGCACCGGGA ............................ ATGCACCCTGCTTGTCATCAAGTCGCGGCAAG 3613726 28 100.0 32 TCGCGGCAAG ............................ GATGCGCCAGGCCATCGAGGAAGGCGGGTTAA 3613786 28 100.0 32 GGCGGGTTAA ............................ TTCTGCGCCGCAATCACAATAGTCTGCATGAT 3613846 28 100.0 32 TCTGCATGAT ............................ ACAGCAGCAGTCGCGCAAAGCAAGCCGCAAGC 3613906 28 100.0 32 AGCCGCAAGC ............................ CATCGAAGCCGCACTTGCTCCTGATGCAGCGG 3613966 28 100.0 32 GATGCAGCGG ............................ ATGTCCTGCGGCAGCAACGCGCCGATGGGGGC 3614026 28 100.0 32 CGATGGGGGC ............................ CGGTGCTGCGCAAGTGATATCCCGGATCGTGA 3614086 28 100.0 32 CGGATCGTGA ............................ TGGTGGCCGCATCCGCGCAGCACTTGCGCAGG 3614146 28 100.0 32 CTTGCGCAGG ............................ ATTAGAGCAATATATGTGCTTGCCATCTATGT 3614206 28 100.0 CCATCTATGT ............................ CGGCTGAGACAAGGCACAAGGAGCCGGTCATG ========== ====== ====== ====== ========== ============================ 18 28 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [7,6] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [431,70] Score: 0.18/0.18 # # Final direction: F [1.42,0 Confidence: HIGH] >NC_013720 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 1408802 35 100.0 36 NNNNNNNNNN ................................... CTCATCGCTGAGCTTCTTCTTCGCGGCGGCCTTTGC 1408873 35 100.0 34 NNNNNNNNNN ................................... CAAGAATTCTGCCGAAGTAGTGAGAGTCATCCCA 1408942 35 100.0 37 NNNNNNNNNN ................................... AATTGATGATGTCGAGATAGATTGCAAGTGCGCAATC 1409014 35 100.0 36 NNNNNNNNNN ................................... AATGCCGCCGTTCTCGTTACGTTCAAAACTGAAGTC 1409085 35 100.0 34 NNNNNNNNNN ................................... ACAAGAACCGTACTCCAAACCTTGCCAGTCTTGC 1409154 35 100.0 34 NNNNNNNNNN ................................... TTCCGGCCTCCGGCCGGAATCACCGTGGTTTGAC 1409223 35 100.0 35 NNNNNNNNNN .........T......................... GTGATCGAGGCAGAGTTAAACGCAGTCCATCCGAG 1409293 35 100.0 35 NNNNNNNNNN TGTGAGA.TGA........................ GATGAGGCCATTACCTTCTTTTCTTTGCCTTTTAG 1409363 35 100.0 36 NNNNNNNNNN .........T......................... CAGTTCGGTTGCGACGGCGATGGGGTCTTGCCCGAA 1409434 35 100.0 43 NNNNNNNNNN ................................... ACCGTCCGCGTTCCATCCCTGTAGGGACAAATCCCCAGCCTCC 1409512 35 100.0 36 NNNNNNNNNN .........T......................... CGTCGCTGGCAACGGTGTTCTCTATCTGATTTTCGG 1409583 35 100.0 39 NNNNNNNNNN ................................... GCAACAGCGACAGAAGTGATGATGAACAGAACAGCAACC 1409657 35 100.0 40 NNNNNNNNNN ................................... CGCACGACTTTGCCTTTTTCGTACAGCTTGTTGATTTGCC 1409732 35 100.0 36 NNNNNNNNNN ................................... GTTCTGCATGATCCAGAACAGACTGGAGCAGTGGCG 1409803 35 100.0 1 NNNNNNNNNN ..........................A...TGACG NNNNNNNNNN ========== ====== ====== ====== ========== =================================== 15 35 36 GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-11.00,-9.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [46.7-50.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [599,232] Score: 0.18/0.18 # # Final direction: F [1.33,0 Confidence: HIGH] >NC_013720 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 1403843 35 100.0 33 NNNNNNNNNN ................................... TTGTAGTTCGTACGGTGCTCTAACCAACTGAGG 1403911 35 100.0 34 NNNNNNNNNN ................................... GACGTCATACGCGTCGTGAGACGTTGGTACGCCA 1403980 35 100.0 36 NNNNNNNNNN ................................... CCAACCCGACTCAGGGAGATTCTGAAGAACGCTAAG 1404051 35 100.0 37 NNNNNNNNNN ................................... GCGCACCACCAAACAGATCTCACGAGAGTCGCGCTTA 1404123 35 100.0 34 NNNNNNNNNN ................................... TCTGGCTTCTCAGCCGGAGGCGCCTTTGGCTCCT 1404192 35 100.0 35 NNNNNNNNNN .........T......................... GCCTCCGTCGGTGAGTTCTTGATGGCGTCATTTTC 1404262 35 100.0 37 NNNNNNNNNN .........T......................... AGGAATTGTTTCCGCCGTTCTTCACGAGCTAAACGCT 1404334 35 100.0 35 NNNNNNNNNN ................................... TACGTCTCGAATGACCCGTGCGTGAAGTAACGGTG 1404404 35 100.0 35 NNNNNNNNNN ................................... CCGCCGCGATCGGAAAGTTCAATCCGTTCACGCCT 1404474 35 100.0 39 NNNNNNNNNN ................................... CCGACATCGCTGACATAGTATCGTGCAACTTCCTTACCC 1404548 35 100.0 39 NNNNNNNNNN ................................... CGCGGAGCGGCAACCGGGATGTCGATCCCGAGACGATCG 1404622 35 100.0 36 NNNNNNNNNN ................................... ACTCGGGTTTGCGAAATCCTCATCGACACTGATTGC 1404693 35 100.0 39 NNNNNNNNNN ................................... GAAGGAATGTGCCTACGCGACTACTACACGGAATCGTGC 1404767 35 100.0 36 NNNNNNNNNN .........T......................... TGCGTGAAATACCGATGGTACCCCACCGTCACCCGA 1404838 35 100.0 40 NNNNNNNNNN .........T......................... TTCCCTTGCAGGAGGCTCACGGCTGTCATTGTTAGGTTTC 1404913 35 100.0 38 NNNNNNNNNN ................................... GGACTCCTCGTAACGGTCCTCCATGTCCTCACGGTGCA 1404986 35 100.0 1 NNNNNNNNNN .G...........................CTTT.A NNNNNNNNNN ========== ====== ====== ====== ========== =================================== 17 35 36 GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-11.00,-9.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [486,88] Score: 0.18/0.18 # # Final direction: F [1.33,0 Confidence: HIGH] >NC_013721 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 870159 28 100.0 33 NNNNNNNNNN ............................ TAAAAGTATGATGCATTGAAGTAACATCTAGTG 870220 28 100.0 33 NNNNNNNNNN ............................ CAAACGTGTCCATGCTTACGCCGCAAGTTTTAA 870281 28 100.0 33 NNNNNNNNNN ............................ GGTGACAGGATTGTTTTTACTGACGGTCAAGGC 870342 28 100.0 33 NNNNNNNNNN ............................ CGGCTCAGCCGTTAAAACTAGATCACACTTGTA 870403 28 100.0 33 NNNNNNNNNN ............................ CGACCTTCAGCAGTTGCCGCAGTTCCACGCAAA 870464 28 100.0 33 NNNNNNNNNN ............................ TACTTTTGGCTGGCTTGTCAACAGGAACATGGG 870525 28 100.0 33 NNNNNNNNNN ............................ CAAGCTCACTAATAATGGCGAAACGCAGGGTAT 870586 28 100.0 1 NNNNNNNNNN .....................C.CTG.G NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 8 28 33 GTCTTTCCCGCATACGCGGGGGTGATCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-10.00,-9.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [78.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [104,183] Score: 0/0.18 # # Final direction: F [1.05,0.37 Confidence: MEDIUM] >NC_013729 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 3468121 23 100.0 61 NNNNNNNNNN .....A..G....CGATC....C GATGCCCCAGCACCCACCCACCACCCCGCCGCACCCGCACCAGCCGCAGCATCCGTATGCG 3468205 23 100.0 49 NNNNNNNNNN ........G.............. GCAGCCGTATGCGCCGCAGCAGCCAAGCCAGCCGCAGCATCCGTATGCG 3468277 23 100.0 31 NNNNNNNNNN .............A......... GCAGCCAAGCCAGCCGCAGCAGCCGCATGGG 3468331 23 100.0 31 NNNNNNNNNN ....................... GCACCCGAACCAACCGCAGCAGCCGTACGCA 3468385 23 100.0 19 NNNNNNNNNN ....................... TCCGCAGCAGCCGCATGGG 3468427 23 100.0 31 NNNNNNNNNN ....................... GCACCCGAACCAACCGCAGCAGCCGTACGCA 3468481 23 100.0 19 NNNNNNNNNN ....................... TCCGCAGCAGCCGCATGGG 3468523 23 100.0 31 NNNNNNNNNN ....................... GCACCCGAACCAACCGCAGCAGCCGTACGCA 3468577 23 100.0 19 NNNNNNNNNN ....................... TCCGCAGCAGCCGCATGGG 3468619 23 100.0 31 NNNNNNNNNN .............A......... GCACCCGAGCCAGCCGCGGCACCCGAGCCAG 3468673 23 100.0 49 NNNNNNNNNN ....G........A...A....G GCACCCGTATGCGCCGCAGCAGCCCAACCAGCCGCAGCACCCATATGCG 3468745 23 100.0 22 NNNNNNNNNN ........G..C.A......... GCAGCCGAGCCAGCCGCAGCAC 3468790 23 100.0 1 NNNNNNNNNN .....TGCG....A......... NNNNNNNNNN ========== ====== ====== ====== ========== ======================= 13 23 32 CCGCAGCACCCGAGCCAGCCGCA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.20,-1.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [10-13] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [23.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [3530,1220] Score: 0.18/0.18 # # Final direction: F [0.96,0.64 Confidence: LOW] >NC_013730 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 7303731 37 100.0 37 NNNNNNNNNN ..................................... CGGGTTGGCGGTGCCGCTGGCAGCGGGGCGTTGCCGC 7303805 37 100.0 36 NNNNNNNNNN ..................................... AGGAAAAGACATTATTAGCCGCTAGATATGCTTCCA 7303878 37 100.0 36 NNNNNNNNNN ..................................... CGATGTACCATCCAAGCTACTGCCCGGATGAGCATT 7303951 37 100.0 36 NNNNNNNNNN ..................................... GCCGGTCGATTTTCCGCTGATTAGCTTCTGCCTTCA 7304024 37 100.0 40 NNNNNNNNNN ..................................... TCGCCCATTGCATTGTGTGTTGGCTTAACGTCTTTCTCGA 7304101 37 100.0 36 NNNNNNNNNN ..................................... GATTATAGTTATCTCCAGCTTCGTCAGGCATTGCCA 7304174 37 100.0 36 NNNNNNNNNN ..................................... ATCTATTGACAATCAGGATATTATTGCCTATTCTAG 7304247 37 100.0 35 NNNNNNNNNN ..................................... ATCTATTGACAATCAGGATATTATTGCCTATTCTA 7304319 37 100.0 36 NNNNNNNNNN ..................................... ACGGATGGGCTACCCGCTTCGTTAAACTACCCGGTT 7304392 37 100.0 37 NNNNNNNNNN ..................................... CACAAAGCGAATGGATTAAACTATTTTAATGTGTGCA 7304466 37 100.0 36 NNNNNNNNNN ..................................... GGCATCAGATTACTGGTTGCGTGGGTTAGAAAACCT 7304539 37 100.0 37 NNNNNNNNNN ..................................... GCTTCCACAAAGTCCATGCACTGACGCCGTGTTTCAA 7304613 37 100.0 36 NNNNNNNNNN ..................................... AGTCCGGACAGATGAGCAGCCCGGACTCATTGCGAC 7304686 37 100.0 36 NNNNNNNNNN ..................................... CAGTTCCCAGCGCTTCATCCGGCGGATTTGTCGCCA 7304759 37 100.0 37 NNNNNNNNNN ..................................... ATCAATTCGTGTTAAAATGGCGGCGCGGTAGGTACCT 7304833 37 100.0 38 NNNNNNNNNN ..................................... ACTAAAGTCTCCGCCTAGAAGGCGGGGGATTTTCTCCC 7304908 37 100.0 37 NNNNNNNNNN ..................................... GATGATTTTTTCTGGTGACAGCTGAGGCAAAGCGCCT 7304982 37 100.0 35 NNNNNNNNNN ..................................... GTCATTGAAGGTGAGATTTGGGGAGATGTTCAAAA 7305054 37 100.0 36 NNNNNNNNNN ..................................... TCAAATTCGTGGTACTCGTCAATAACTGCGAAGCTG 7305127 37 100.0 36 NNNNNNNNNN ..................................... TTGGCAAGGACCATGAAGTGCGGGCCGCATGGCCTG 7305200 37 100.0 36 NNNNNNNNNN ..................................... TCACCAAGGTATATTTCACAGTCTAGTATTGACGCA 7305273 37 100.0 36 NNNNNNNNNN ..................................... TCCTTCGTAATGCGAATATTCTCGTTGTTATCGCTG 7305346 37 100.0 38 NNNNNNNNNN ..................................... TCACTTTCCACCTCATCTGTACTGTCTTCCTTCCATTT 7305421 37 100.0 36 NNNNNNNNNN ..................................... TCACTTCGCCGCTCACCATCGACAAGTGAAGACGTA 7305494 37 100.0 41 NNNNNNNNNN ..................................... CGTCAGGACATCATTTGGTCGAAGCCAAATCCCATGCCGGA 7305572 37 100.0 36 NNNNNNNNNN ..................................... TTGTATGGCAAAACGAAATACAAAACAGAAAAGCGC 7305645 37 100.0 38 NNNNNNNNNN ..................................... TTCAGAATGCTGTCAACTACGCTAAATACCGGGCCAGT 7305720 37 100.0 36 NNNNNNNNNN ....................................T CGGGTTCTATTGTGTTTCCATCTATCCCATCTGAGG 7305793 37 100.0 36 NNNNNNNNNN ..................................... CCTCAAACGGTTGGCGCGTCGGCGGGAAAACAGCCA 7305866 37 100.0 37 NNNNNNNNNN ..................................... CCTACACGAAAGAGAAAAACGAGAACGCATGAAAATT 7305940 37 100.0 36 NNNNNNNNNN ..................................... CCGGAATCAGTTCATTATACGTGCCCGTCACCCATC 7306013 37 100.0 36 NNNNNNNNNN ..................................... ATGCGTTTCGTAGTCTGGTCAGTAAAGCCTCGTCGG 7306086 37 100.0 36 NNNNNNNNNN ..................C.................. CAAAGGCAATTTCAATGGCGGTGGTATCGCTGAAAT 7306159 37 100.0 36 NNNNNNNNNN ..................C.................. GCCTGATCGGGCGTTGGAGCGGTGCGTTTGAGCGAG 7306232 37 100.0 38 NNNNNNNNNN ..................................... ATACCCTCGTGACTGGCATCAATGGTAGTGCAACCAAC 7306307 37 100.0 38 NNNNNNNNNN ..................................... ATGCAGCTATGGACAAAAAAGGGGGGATGCTCGAAACA 7306382 37 100.0 38 NNNNNNNNNN ..................................... TGGCGATTCGGCCAAAAACTCCAAGTCCAACCCGAAAC 7306457 37 100.0 37 NNNNNNNNNN ..................................... CCCATCTCTCCTAATGTTTTCTCACCCAGCTTGGTGA 7306531 37 100.0 42 NNNNNNNNNN ..................................... TAGTCTCGTGCGACAGGCGAATTGTGAATAATGTTAATCTGT 7306610 37 100.0 37 NNNNNNNNNN ..................................... TTAGCCGGGGTAACTCCTTGCGTAGCTAGGTAGTCAA 7306684 37 100.0 41 NNNNNNNNNN ..................................... GCTTAACGGGGCCTTGTTGATGGTCTTAAAGCGGTCAATAA 7306762 37 100.0 25 NNNNNNNNNN ..........T.......................... AACTCTGCATGATCGGCCCTACAGC 7306824 37 100.0 1 NNNNNNNNNN ..................C.G..............TT NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 43 37 36 ATTCCCGAGGCTGATCCATTAGAAGAAGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.20,-2.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [198,205] Score: 0/0.18 # # Final direction: F [5.28,0 Confidence: HIGH] >NC_013740 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 882151 31 100.0 35 NNNNNNNNNN ............................... CTGGAACCGGACGTACATGTCATTGAGCGATGCCC 882217 31 100.0 34 NNNNNNNNNN ............................... CTCTGGAACCGGAAAACTGGCAGGAGCAGCAGGC 882282 31 100.0 35 NNNNNNNNNN ............................... CTACATTTCCCACATATATATAGGGTACGTATATA 882348 31 100.0 33 NNNNNNNNNN ............................... CTGTTAAAGCTAATTCAAATCGACGACCCAGTG 882412 31 100.0 34 NNNNNNNNNN ............................... TGGATAAAGTAGGTTTATCAAACGTTGAAATTAT 882477 31 100.0 34 NNNNNNNNNN ............................... TGGCTCGCTTTGGCGGCATCCCTTGCGGCGATTG 882542 31 100.0 35 NNNNNNNNNN ............................... CCCTGGCTACAACGAGGAAGGCGACCCGCGGGGCA 882608 31 100.0 34 NNNNNNNNNN ............................... CATGAGCTGCCCAGCAATGCGGAACTGGATTATA 882673 31 100.0 34 NNNNNNNNNN ............................... CCCAGGCACATAGAGCAGGTTGAAGCTGTTCTCC 882738 31 100.0 34 NNNNNNNNNN ............................... CACCATCTGCCCCGGCGTGCTGTCCACTCTCAGA 882803 31 100.0 33 NNNNNNNNNN ............................... CTGCTACGGGCGACTTATCCGCTATGTACATCG 882867 31 100.0 33 NNNNNNNNNN ............................... CATGGGATCCCATATCGAGGAGTTGGTCAAGCA 882931 31 100.0 33 NNNNNNNNNN ............................... CTGTTAAAGCTGATTCAGATTGACGACCCAGTG 882995 31 100.0 36 NNNNNNNNNN ............................... GCTGCAATGGGATTTTTGCAAAACGGCGATTCAACC 883062 31 100.0 35 NNNNNNNNNN ............................... TGGTTCGGGCGCGGTACGAGTTAAGGAAGGAGCAA 883128 31 100.0 34 NNNNNNNNNN ............................... TTCGCCGGTTTTCCACGAATCACAGGGGAATCCG 883193 31 100.0 35 NNNNNNNNNN ............................... GTAATGATTGTTACCATGCTAGAAGGGCTGATTAA 883259 31 100.0 33 NNNNNNNNNN ............................... CCGCCCTGAAAAAGCTGAAAAACGAGAGCAGCA 883323 31 100.0 35 NNNNNNNNNN ............................... ATCTTCATCCACCAGGCCCTTCCCGATGAAGCCTA 883389 31 100.0 33 NNNNNNNNNN ............................... AGCCCGTAGATCATCAGCAGTTCCCGGTAGTTG 883453 31 100.0 35 NNNNNNNNNN ............................... TTCCGGGCGTGCAGAGAGTGTGGCGGTGTTTTCCG 883519 31 100.0 34 NNNNNNNNNN ............................... AGACCTGGTATAAAGAGGAGGTGGGCGTAGATGT 883584 31 100.0 34 NNNNNNNNNN ............................... AAACAAGTGTTAATCCTTGCAACGCGCCTGGACA 883649 31 100.0 35 NNNNNNNNNN ............................... CGGACCGGCAGCGGCGCCAAGAAATCCCTGGATGG 883715 31 100.0 33 NNNNNNNNNN ............................... GGTGATGCGATGAAGGTTCAGTATCGCGATTCT 883779 31 100.0 34 NNNNNNNNNN ............................... GCCGGACTGACCATTGTAAACGCCATCCAGAACA 883844 31 100.0 36 NNNNNNNNNN ............................... CTTGTCCACGCTGGCAAATAAAGCAGCTAGGGCGGG 883911 31 100.0 35 NNNNNNNNNN ............................... GGGACCATCGTCAAGGAACAGGACGGGAAAATCCT 883977 31 100.0 33 NNNNNNNNNN ............................... ACATTCCTGCTCATGGTCCAGGCTCTTGTGACA 884041 31 100.0 35 NNNNNNNNNN ............................... CTCCACCGTGTGGGCCTGGATGCCGCTTCCCTTCA 884107 31 100.0 34 NNNNNNNNNN ............................... TGTGATATTGGCCGCCGTCACCTTATCCCCGGCA 884172 31 100.0 35 NNNNNNNNNN ............................... ATCGACAGAGAGTTTATGAGCAAATTCCCCGTAGG 884238 31 100.0 35 NNNNNNNNNN ............................... CGAAGTCGACGGTAAAGCCGTCCGGAGTGTTGGGA 884304 31 100.0 36 NNNNNNNNNN ............................... CACCGCTTCCTGGGTATGCAGGTCACGGATGGCGTC 884371 31 100.0 34 NNNNNNNNNN ............................... AGGACGTCCACCTTAAAGTACTTGGCAGCATCCT 884436 31 100.0 36 NNNNNNNNNN ............................... GTCGAGGGTCATTTAGAGCCCTCCCTTCTTTATGCG 884503 31 100.0 34 NNNNNNNNNN ............................... TTATTCTTCCAGCTCGGGGCATCGCTGTATTTGG 884568 31 100.0 35 NNNNNNNNNN ............................... CTACCACCACCTGGGACAAGGCAGGCGCCACCATC 884634 31 100.0 33 NNNNNNNNNN ............................... GGCAGCAGTCCCGCCTCCGGTCAACGTCTTGTC 884698 31 100.0 34 NNNNNNNNNN ............................... TCATTATTCGACATTATGCGCCACCCCTCTGATG 884763 31 100.0 35 NNNNNNNNNN ............................... CTGGAACCAGGTGTACAGGGCATAGTAGAATTCAC 884829 31 100.0 35 NNNNNNNNNN ............................... TCCATAAAAGCTACCACCAATTCCAATGAAGTGGT 884895 31 100.0 35 NNNNNNNNNN ............................... TAAAACCTGGGCCGGGGTGGCCAATGACCACGCCA 884961 31 100.0 34 NNNNNNNNNN ............................... CACGGCGGAACCGGCAGCCGTGCCAGGCAGCGCT 885026 31 100.0 35 NNNNNNNNNN ............................... CGTTACCGATTTGGTAACGGAACTGGAAAAAATTG 885092 31 100.0 35 NNNNNNNNNN ............................... CAGGCAGCGGCCACCGGCCAAAATGGTGCCGTATC 885158 31 100.0 35 NNNNNNNNNN ............................... GTTGTGGCGGCTATCGCCTCACTGGTGAATGGCTC 885224 31 100.0 34 NNNNNNNNNN ............................... CTCCCATAGGCTGAGCTGGTGGAGCATGGATTGG 885289 31 100.0 35 NNNNNNNNNN ............................... CCGCTGACCACGCAGCTTGGCTTATGGATCATAAG 885355 31 100.0 33 NNNNNNNNNN ............................... TGGCGGCGAATAAAGAAGAGATTGTGGACATCA 885419 31 100.0 34 NNNNNNNNNN ............................... CTTGGGGCGATGGCGGGGGCATCCTTTGCGGCTG 885484 31 100.0 34 NNNNNNNNNN ............................... TCCAGGGCAGGCTGTAGCCATAAGGTCACAATGC 885549 31 100.0 36 NNNNNNNNNN ............................... AGCAGGGCCCCGTGGATACCTTTCATTTTCGCACCA 885616 31 100.0 34 NNNNNNNNNN ............................... ATTGTTTTGATGGTTTTATTGGCCCATTTTGGTC 885681 31 100.0 34 NNNNNNNNNN ............................... ATGGTATAATATAGGCGTGAGGTGATAGCATGAA 885746 31 100.0 34 NNNNNNNNNN ............................... TTGAAGAGAAACATCAACACCATCTTCCTGATGC 885811 31 100.0 35 NNNNNNNNNN ..........T.T.................. TGAGAATTGTATACATTGAAAACATGGACGGCGAG 885877 31 100.0 33 NNNNNNNNNN ..........T.T.................. TGGCCGCTTGAATAGTCATGTTAGCCGGTATGA 885941 31 100.0 35 NNNNNNNNNN ..........T.T.................. CACGACGGCAGCATCGCCAAAAGCCGTCTTGCCTT 886007 31 100.0 34 NNNNNNNNNN ..........T.T.................. GCAGTGAGCTACGACGAAAACCCGAGCTACATCG 886072 31 100.0 37 NNNNNNNNNN ..........T.T.........A........ TCTGATACAGATCTGATTACTGCGTCCCAGCAAGGTC 886140 31 100.0 1 NNNNNNNNNN .C.C...G.AAGG...A....AA........ NNNNNNNNNN ========== ====== ====== ====== ========== =============================== 62 31 34 GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [6,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.70,-6.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [50.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [123,280] Score: 0.18/0.18 # # Final direction: F [5.92,0.18 Confidence: HIGH] >NC_013745 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 385695 20 100.0 44 NNNNNNNNNN .................... CGGTCAACCGGATGAGTAGCTGCGGTCGAACGGGTGAGACCCCG 385759 20 100.0 39 NNNNNNNNNN .................... TGGTTGTAGGTTAGCTGTGGGAGTAGGGATGAGACTCCG 385818 20 100.0 63 NNNNNNNNNN .................... CGGTCGAACGGGTGAGACCCCGTGTGCGATATGAATTCTGGAACTCGCTTAAGTGAGGCCCCG 385901 20 100.0 1 NNNNNNNNNN ..............C..A.T NNNNNNNNNN ========== ====== ====== ====== ========== ==================== 4 20 48 TGTGCGATATGAATTAGCTG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [328,85] Score: 0.18/0.18 # # Final direction: F [0.59,0 Confidence: HIGH] >NC_013766 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 539188 29 100.0 35 AAGTTAGTGG ............................. ACAGATCAAACTCCGGAAGGGTGATTGTAAATGGC 539252 29 100.0 36 TGTAAATGGC ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 539317 29 100.0 35 AGCATGTAGC ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 539381 29 100.0 34 TGGGTTACAA ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 539444 29 100.0 35 TCGTTTATAA ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 539508 29 96.6 36 TCCTTTCTAT A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 539573 29 100.0 35 ATCAAATTAA ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 539637 29 100.0 TTACAATTTC ............................. TTGGTTCCTT ========== ====== ====== ====== ========== ============================= 8 29 35 GTTTTAGTTACTTATTGTGAAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [239,393] Score: 0/0.18 # # Final direction: F [0.78,0.27 Confidence: MEDIUM] >NC_013768 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 539209 29 100.0 35 AAGTTAGTGG ............................. ACAGATCAAACTCCGGAAGGGTGATTGTAAATGGC 539273 29 100.0 36 TGTAAATGGC ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 539338 29 100.0 35 AGCATGTAGC ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 539402 29 100.0 34 TGGGTTACAA ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 539465 29 100.0 35 TCGTTTATAA ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 539529 29 96.6 36 TCCTTTCTAT A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 539594 29 100.0 35 ATCAAATTAA ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 539658 29 100.0 TTACAATTTC ............................. TTGGTTCCTT ========== ====== ====== ====== ========== ============================= 8 29 35 GTTTTAGTTACTTATTGTGAAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [239,393] Score: 0/0.18 # # Final direction: F [0.78,0.27 Confidence: MEDIUM] >NC_013769 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 739066 24 100.0 38 TGATAAATTT ........................ ATCGAAATCTGACGGTAAACTGGGGAGTTTAAGGGGTG 739128 24 100.0 40 TTAAGGGGTG ........................ TGGGGAGTCGGTCCCACACCCATCGCCGCCCTGAAGGCGG 739192 24 100.0 41 CTGAAGGCGG ........................ GAACGGGTTTGAAGACACAGCCATGTTCGCAACATATGCGG 739257 24 100.0 40 ACATATGCGG ........................ CTGGTTCTAATTCTTCCTCTTGTACTGTATTATTATTTCT 739321 24 100.0 39 TATTATTTCT ........................ TAGCGAAATTAGAGTAAACCCTACTGAAAACGTTAGAAA 739384 24 100.0 38 ACGTTAGAAA ........................ GTAGTGCGTGGAAGGACGAATTGATTAGACATTTCTCA 739446 24 100.0 41 ACATTTCTCA ........................ TTTGTGATAAAGTTGAGACAAATGGAGAATGGAAAGGAAAT 739511 24 100.0 40 GAAAGGAAAT ........................ GTGGAGGATTTATAATAGGAGATGGTGGCGGGTTGATGAT 739575 24 100.0 GGTTGATGAT ........................ TGAGGATTTT ========== ====== ====== ====== ========== ======================== 9 24 39 CTTTCAATTCTATAGTAGATTATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [59,399] Score: 0.18/0.18 # # Final direction: R [0,4.68 Confidence: HIGH] >NC_013769 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 785731 24 100.0 43 NNNNNNNNNN AGGG.GT.AT.............. AAATATGTGAAGACGAAGCAATTGCAAGGGTAATATACACTAA 785798 24 100.0 41 NNNNNNNNNN ........................ TTAATTCCCATGGATTGTAGATATTTTTCGACATATTTGGA 785863 24 100.0 43 NNNNNNNNNN ........................ TTGAAACAACATACAAGGAAATTACATGTGCTAAACAAGTGCC 785930 24 100.0 38 NNNNNNNNNN ........................ ATGTTATATCCGGCATCTCTCAACAGCTTTTCCTGAGC 785992 24 100.0 42 NNNNNNNNNN ........................ CTGAATTTCGATTGAAAATGCCGATGCATATATTTCCCCCAT 786058 24 100.0 37 NNNNNNNNNN ........................ CTCTTGAAAGCTTTCTTCTTGTAAAAAATCCTATTAA 786119 24 100.0 37 NNNNNNNNNN ........................ AAAACTAAAGAAGCCGTGAAGACTATCGCGGGGATCT 786180 24 100.0 39 NNNNNNNNNN ........................ TAATTTTCTAAGCTCACTTTCAGCATTTCCTAGATTTAT 786243 24 100.0 41 NNNNNNNNNN ........................ TCCGCAGAAAGTGAAACATCAGACTTATGCACTTCTTCTTC 786308 24 100.0 38 NNNNNNNNNN ........................ TCCGTTATTGATAAAGCATTATCGCTAGCAGTGAGAAT 786370 24 100.0 41 NNNNNNNNNN ........................ TCTGCACCTAATCCTCCCGCCTGATTATTCATATCTATTAC 786435 24 100.0 39 NNNNNNNNNN ........................ AGGAGATTTGCCTTTTGCTGACCCTCCTTTTATACAAAT 786498 24 100.0 42 NNNNNNNNNN ........................ TTGAAGAGAGGGGTATTATACCTAAGGATTGGGAGCCGAAAG 786564 24 100.0 43 NNNNNNNNNN ........................ ATAAAGTCGTAAACCTTAAGCTTCCACACCTTACGGTAATAAT 786631 24 100.0 40 NNNNNNNNNN ........................ TGAAGAGATTAGTGGTACAATTAAATGCAATTCCTGAAAA 786695 24 100.0 39 NNNNNNNNNN ........................ TCTGATAGGAGTAGCACTTAGTCCTAACCTTATCGAATT 786758 24 100.0 37 NNNNNNNNNN ........................ TGAAATTTATAACGCCATATAATAATTCATATTTATG 786819 24 100.0 43 NNNNNNNNNN ........................ AGCAGATGCGTTATTCGATCCCAATTTCAAGCCCTACAGTAAG 786886 24 100.0 40 NNNNNNNNNN ........................ ACAACAATATCCCTATCTGCATACGTACATAACACTATAT 786950 24 100.0 43 NNNNNNNNNN ........................ CTTCTTAGTCAAACTTACACCCCTTGTACTTTTACTCTAATTT 787017 24 100.0 42 NNNNNNNNNN ........................ ATACTAGTTTTTACACATAGTCTAATTGGTGATAAAGAATGA 787083 24 100.0 40 NNNNNNNNNN ........................ CACCTCCTCCTACTTGTCCATTTGTACCGACATAACCTAG 787147 24 100.0 41 NNNNNNNNNN ........................ TTGTAGGCTCAAACAGCCTCACCGCATTTCTGTTCAATAAG 787212 24 100.0 43 NNNNNNNNNN ........................ ATACACATGGTCATTCTAACATCATCAACCAAGAAATATGCTT 787279 24 100.0 39 NNNNNNNNNN ........................ ATATTTACATCGGTAATCCATGCCCTAATGCTTTCGATT 787342 24 100.0 40 NNNNNNNNNN ........................ GAAATGTGGTACCAAAATTAAAATCGGGAGCGATGGTCGT 787406 24 100.0 41 NNNNNNNNNN ........................ TGGGCTGAGCAAAGAGGAATTATGAACCGTAAAATGGTAGA 787471 24 100.0 40 NNNNNNNNNN ........................ TTCGTGGAGGGTACTATTTGCCTACCCTTACAGAAAGAGC 787535 24 100.0 39 NNNNNNNNNN ........................ GATATACTTAAATGCACACGGTTATAAGGAGAACCTCAT 787598 24 100.0 38 NNNNNNNNNN ........................ TCAGGGTTCAGAGGATCTGTTACAACAGAAGTAATTTC 787660 24 100.0 39 NNNNNNNNNN ........................ AGAAATTGACAATTGAAAAATTAATAACTAATAACTCTC 787723 24 100.0 42 NNNNNNNNNN ........................ AAAGGAAGAACACCTAGATCATACAGTCAAAGATATGCAAAA 787789 24 100.0 37 NNNNNNNNNN ........................ AGTTTGAAAAAGGAATAAATGAAATTTATATGGATCT 787850 24 100.0 43 NNNNNNNNNN ........................ TTAATGTCAACTATGGAATACATAGAACTTCCAAATGATGTTA 787917 24 100.0 39 NNNNNNNNNN ........................ AACAATTACATTCAAAGCCTACCAGAAAGTGTTAAAGAA 787980 24 100.0 43 NNNNNNNNNN ........................ TAGAAATTAATAAAAAAACTGTAGCGGTGATATATGAAAGAAT 788047 24 100.0 44 NNNNNNNNNN ........................ AGTATAGTCTTAGCTAAATGTGACTGTTGTAATCCTCAAAGAAT 788115 24 100.0 43 NNNNNNNNNN ........................ AAAAGCAAGACAATAAGTATATCTTAGTTTTTCATAGTAAAGA 788182 24 100.0 40 NNNNNNNNNN ........................ CTATTATGAAAAGGGGGGCGAAGGGGTCGGGCTTGTAAAC 788246 24 100.0 44 NNNNNNNNNN ........................ CGCGGGACTAAGAGAACTTTAAGATGTCCTTGTTCTGAGACTAA 788314 24 100.0 39 NNNNNNNNNN ........................ AAGGCTTGTGATGGTACGCCGTACCTTGTTTCTAGGAAT 788377 24 100.0 40 NNNNNNNNNN ........................ AGATTGAAACTAATTTCCCGACCATAATCATATCTGGCGT 788441 24 100.0 37 NNNNNNNNNN ........................ ATGTAGAAACTCCAATATTATTAGCATGGCAAAATAA 788502 24 100.0 37 NNNNNNNNNN ........................ AAGGTATAAATGTTGTGTATGCTATAGATGTATGTAG 788563 24 100.0 43 NNNNNNNNNN ........................ ATTAGCTTGCATATGACTTCATTAACAGAATAAATTATGGTGT 788630 24 100.0 41 NNNNNNNNNN ........................ ACTTGACCTTGGGTGGTGTTGATATAGTATGCAATATTACC 788695 24 100.0 40 NNNNNNNNNN ........................ CGCGAAATTCGTGAAATGCAAAAAGATAGGGATTTAAAGA 788759 24 100.0 40 NNNNNNNNNN ........................ AAACGTTAATAAAATATACAATAATTTCAGCAGTGTGAGA 788823 24 100.0 42 NNNNNNNNNN ........................ TACGTCTAAAGCAAATCCGCTATTAATTATAGAATTTAAATT 788889 24 100.0 40 NNNNNNNNNN ........................ TATAATAATACTTTACTTTCTTATTAGCTGGATAATAAGA 788953 24 100.0 40 NNNNNNNNNN ........................ TAGAATTTAAGCAAAAAGATTATGCGATATTGGGATTCAT 789017 24 100.0 42 NNNNNNNNNN ........................ TGTATTTTGCAATGGTAACTGTGAATTTAAGTACTTGATAAC 789083 24 100.0 41 NNNNNNNNNN ........................ ATAATTCATATCTGTGCGGAATTGACTATAAAAATTCGATT 789148 24 100.0 41 NNNNNNNNNN ........................ GTATTTTTTTCATTAATCTGCACGAAACTAACGTATTTTAA 789213 24 100.0 39 NNNNNNNNNN ........................ AAGACATTCCAGAAAAGAGAATTTGCGATAAAACCCAAA 789276 24 100.0 40 NNNNNNNNNN ........................ ATTTCATTAAAAGATAATAAATACCCATTTTTTGAAGATA 789340 24 100.0 42 NNNNNNNNNN ........................ ACGATAAACCTAAGTGCTAACGCTTTTGTGAAGAGTATATAC 789406 24 100.0 40 NNNNNNNNNN ........................ TTGGACATCAGGCTACTGCTGAAGCGTTATCAAATATATT 789470 24 100.0 40 NNNNNNNNNN ........................ AAGTAGCGAAATTATTGCCTCTTTGCCATGCTAATAAAAT 789534 24 100.0 43 NNNNNNNNNN ........................ AAGAAACTATCAAAAAAGCTATCTCAAAATTAGCAGAATATGT 789601 24 100.0 44 NNNNNNNNNN ........................ TCTTTGCTTCTTCTTGTAGCTCTATCTTCTGTGTTTGGGCTTCT 789669 24 100.0 36 NNNNNNNNNN ........................ TACGCTTTCATGAATTAATGAACCTTGTAGTGTTGA 789729 24 100.0 37 NNNNNNNNNN ........................ CAGGTTCAACTACCACCATATCGCATTCTGGAATTGA 789790 24 100.0 41 NNNNNNNNNN ........................ GATATTGGCAGAAAAAAAATAGAAGTGATATATGAACGTCT 789855 24 100.0 40 NNNNNNNNNN ........................ AGTTTTGTAATTTGTTCCAATTGTGTTAATAATAACTGAT 789919 24 100.0 40 NNNNNNNNNN ........................ GCTCATTATTTAAACAACATTTGCATGATCCTTCTCTAGG 789983 24 100.0 38 NNNNNNNNNN ........................ TTCAAAGTCACAGAAAGAAATAGAGTGTTTTTTTACCA 790045 24 100.0 41 NNNNNNNNNN ........................ CTATAATTGCTATTAGGAATATCGGCTATTTCACCGTAAGT 790110 24 100.0 41 NNNNNNNNNN ........................ TCGTTCCGTTACGACGAATGGAGCCATCCCTTATTCGTGGA 790175 24 100.0 43 NNNNNNNNNN ........................ AAGACTTTAAACGTGAGACATTTCACCCAAGAGTAATATACAA 790242 24 100.0 44 NNNNNNNNNN ........................ ATACATAGATTAAATTAGTGATAAAAGATGAAAACAGTTGAAGT 790310 24 100.0 42 NNNNNNNNNN ........................ TTTCCGTCAATAAGTCTTAACCAGTACCTGTAACTGGGTTTA 790376 24 100.0 41 NNNNNNNNNN ........................ AGAAGAACAAGAAAATGAATTAAAGAAAATGCTAGAGGAAA 790441 24 100.0 41 NNNNNNNNNN ........................ CCTTGTTATCTTTTTTGTTGCTGCTGTATAAAACAGAGCGC 790506 24 100.0 42 NNNNNNNNNN ........................ TTCAAATAACATCATCAGATCATGATTCAGTGAGTTTTCAAT 790572 24 100.0 44 NNNNNNNNNN ........................ TAGATATATTCAAAACTTGCAGTAATGTCGACACTTGTGTATAA 790640 24 100.0 45 NNNNNNNNNN ........................ TATATGATATATTTGTGAAAGGAAAGACATTAGAATTTCCATTGA 790709 24 100.0 45 NNNNNNNNNN ........................ ATAAATGGTGTCTCACTTGATTTAGTACCTGAGACTGTCTCTGTT 790778 24 100.0 40 NNNNNNNNNN ........................ TATTATGACAAGGTAAGTGGGAAATTTGTGGATTACAAAG 790842 24 100.0 40 NNNNNNNNNN ........................ TTGGTCTTTTCTACCTTATATTTGAAGTCTGAAAGTTTAA 790906 24 100.0 45 NNNNNNNNNN ........................ TTGAGGACTCTTTAGAACAACTCCTTCAATATTTGTTGGTAAATT 790975 24 100.0 46 NNNNNNNNNN ........................ AAGGAATGACGTTCGTGTTTTCTAAGATACTTGTTAACCCACCTAT 791045 24 100.0 43 NNNNNNNNNN ........................ ACGGTTAAGATACCTTTTTGGCGATGGTATTGGAATTTTATTT 791112 24 100.0 44 NNNNNNNNNN ........................ GGAATAGGAATTATCCTACCTCAGCCTCAACAACAAAATTCGTC 791180 24 100.0 40 NNNNNNNNNN ........................ GTATCTCATCGGCAATAACATAAATATGTATTCCACCATG 791244 24 100.0 42 NNNNNNNNNN ........................ AAGTTCCCCTTAAAGGAAGAACAAGGGCATTTGAAAATAATA 791310 24 100.0 43 NNNNNNNNNN ........................ ATTTTTTAAAAGCATTTGCTGACCATTCAGAATTTACAATTAT 791377 24 100.0 41 NNNNNNNNNN ........................ ATATAAATTGTATTATTTCTTAGATCATAATTAATTGTAAT 791442 24 100.0 42 NNNNNNNNNN ........................ AAATTTATATGTCAGATTCTTAGAGTAATAAAGGTGGAAAAA 791508 24 100.0 40 NNNNNNNNNN ........................ ATAGCTCATTTTTTCACCCCGCCAATATTATTGTTTTCTG 791572 24 100.0 38 NNNNNNNNNN ........................ GATCTCCCGCTGGTTCACTAGGAGAGGTAAAGCATCTA 791634 24 100.0 38 NNNNNNNNNN ........................ AGAGCTATCAAATCATCTTTGCTTTGCAAATAATATCT 791696 24 100.0 43 NNNNNNNNNN ........................ TAACGCTCTACTCTATCTTATTAATAGCGTAAATACTCTAAGG 791763 24 100.0 41 NNNNNNNNNN ........................ GACAAAGTAAAGAACGTTAAAGGAATTTATTATACACTGAA 791828 24 100.0 39 NNNNNNNNNN ........................ TCAGGATCTTCTACCTTCCCTTCTTTATTTTTCACGCAT 791891 24 100.0 40 NNNNNNNNNN ........................ GTGAAGAATTTCAAGAATATTTAAGTTTAGTAAAAACAAT 791955 24 100.0 43 NNNNNNNNNN ........................ TAAAATTTGCAGGCAATATGGCAGATGTGTATAAAGAGTTAAA 792022 24 100.0 39 NNNNNNNNNN ........................ ACCTAGTTTTGGGGTTCTCTACATAATCCGCTACCCCTC 792085 24 100.0 39 NNNNNNNNNN ........................ ACTTCTCTTTACCAAAGCCTAACGGTTACGGTTTAATTG 792148 24 100.0 42 NNNNNNNNNN ........................ ATGCCGTACTCATTGTTGATGAGAGGAGCGGGCTACCGGTAA 792214 24 100.0 42 NNNNNNNNNN ........................ AGAATTATTGGCACAGCTAGCAAAGGTCAAAAAGATGATCAC 792280 24 100.0 44 NNNNNNNNNN ........................ GTCGACGGTGCCATATTTGTAGCAATCTCTGCTATTCCTATCGT 792348 24 100.0 40 NNNNNNNNNN ........................ TGTCGGAAAAGAGTATGTTGAGGAAATTAGAGTAAAAAAC 792412 24 100.0 40 NNNNNNNNNN ........................ TTGCGAATATAATCAAGAAACCGATAGAAAATGGAGTTGA 792476 24 100.0 40 NNNNNNNNNN ........................ TTGAACCACACCCTGCTGTAAGACAAATCACTATAAGAAA 792540 24 100.0 40 NNNNNNNNNN ........................ ATACCAGTTTTACATATCTATCCTTTACATGATCTAGATG 792604 24 100.0 1 NNNNNNNNNN ........................ NNNNNNNNNN ========== ====== ====== ====== ========== ======================== 107 24 40 CTTTCAATTCTATAGTAGATTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis suggestion: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [491,355] Score: 0/0.18 # # Final direction: R [0,5.18 Confidence: HIGH] >NC_013769 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 796863 24 100.0 39 NNNNNNNNNN ........................ CACTTTAACATATTTCTTTTCAACCACGAGGTGGGTGTT 796926 24 100.0 39 NNNNNNNNNN ........................ AACGCACTTAATGGTTATTATCCCTTCCAGAACGGCTTC 796989 24 100.0 46 NNNNNNNNNN ........................ TGAAAGATTTTGAGGGAGAAGTGAAAAAAATTAATAAAAAGTTTAC 797059 24 100.0 40 NNNNNNNNNN ........................ AATCTTGACAATTCCGTATACGGTGGCGTTTTCTTGACGA 797123 24 100.0 38 NNNNNNNNNN ........................ TATGCCAAAGGTGTTAAGATTCCTAGGGTCGAAAGGAC 797185 24 100.0 39 NNNNNNNNNN ........................ GTGATAGACATCGAGGGGTTACTCGGGCTCTCTCACGAA 797248 24 100.0 40 NNNNNNNNNN ........................ GTACTGGTTGATTATTGGATCTTAGTACGGCGTCTCTAAT 797312 24 100.0 38 NNNNNNNNNN ........................ TAACCCCAACGATTGTTAAGAAGATTAATAAGCCGTAA 797374 24 100.0 42 NNNNNNNNNN ........................ CAGCATTTCCTAAGTTTATGGGTACTTTGCCTACTTTATAAA 797440 24 100.0 41 NNNNNNNNNN ........................ GTATGTGTCCCTTAACGTGTATAGCCTGTCCTCACACTCTT 797505 24 100.0 42 NNNNNNNNNN ........................ GCATTCGCCCCTCTCATCATCACTGCTAATGAGATGAGAATA 797571 24 100.0 36 NNNNNNNNNN ........................ CCCATCTCACCCACCGATAAAAATTTATTGAACAAT 797631 24 100.0 43 NNNNNNNNNN ........................ AGTACCTCGGTACCGTAATAGCCTGCTAACGCTGAAACATCTG 797698 24 100.0 43 NNNNNNNNNN ........................ GATTATACTGAGTTTTATCTTAATACAATTACTACCGATATAT 797765 24 100.0 40 NNNNNNNNNN ........................ CTTATAAATGAGTTAATTCAACCTGTTGAAAACAAAGGAA 797829 24 100.0 40 NNNNNNNNNN ........................ GAACAAGAAAACATTATCATGGTACCGCTTGACTACGTAG 797893 24 100.0 36 NNNNNNNNNN ........................ CGCCACCCAGTGCTACTGCTTCTGGGACAACTGGAG 797953 24 100.0 40 NNNNNNNNNN ........................ AGAACTTCCTCCTCGCCTCCCCGTGGAGGGAATCCAGACT 798017 24 100.0 43 NNNNNNNNNN ........................ TTTGAAAAACATAAAATAGACTTGAATACTGCACAGTCATATT 798084 24 100.0 40 NNNNNNNNNN ........................ TGAATTTTTTCGCCGTATTGCTGAGCAAATTGTAAATCAG 798148 24 100.0 42 NNNNNNNNNN ........................ CCGTGATGATGCCGTTTATTTCTTCATTCGTGAAAGTCCTTC 798214 24 100.0 39 NNNNNNNNNN ........................ ATTTCATGATGTTCGCAGGAATAGCTAATGCCACTTAAA 798277 24 100.0 42 NNNNNNNNNN ........................ CAAGAAGTAAAGTCGGGACAGGTTCCCGAAACCGCGAGTCCA 798343 24 100.0 40 NNNNNNNNNN ........................ AAATGTATCTCTCTACTTATACGGGGTTCTTTTTTAACTT 798407 24 100.0 39 NNNNNNNNNN ........................ ACAATGTTTTACTACATAAAGAACCTGAGGATACCAGAT 798470 24 100.0 42 NNNNNNNNNN ........................ GCTAATGCAGAAACATCAGCTATATCGTTAAAGAACTGTTGG 798536 24 100.0 38 NNNNNNNNNN ........................ TGCTGATGTGCATATTAAAGGTTTTTGAGGTTTACAGT 798598 24 100.0 39 NNNNNNNNNN ........................ TGATTTGACTTGAAACCACCCATCTCTTCTCATTGCCGA 798661 24 100.0 37 NNNNNNNNNN ........................ AACGTTACGACGAGGGGTGGTCGTTGTGATGGAGGAA 798722 24 100.0 38 NNNNNNNNNN ........................ GTTGAAACTTTTTTCTGGAGAGGTGTCTGGATAGGCTA 798784 24 100.0 38 NNNNNNNNNN ........................ TTCTCCAGCTCATAGTATTTTTCTTCTACGACTTTTGC 798846 24 100.0 42 NNNNNNNNNN ........................ ATCAACATAACAAACATGAACGCGATCGGTATCGCGATTACG 798912 24 100.0 42 NNNNNNNNNN ........................ TTCTGTGGTCGCCAGTACCCTGTCCTCGTTCATCATTTCTAA 798978 24 100.0 38 NNNNNNNNNN ........................ GGCTCAGTTTGCGTTAGTGCTGTTATTATTGCTTGTAG 799040 24 100.0 39 NNNNNNNNNN ........................ TCACTTAAGATACAGCAAAGACGTTGACGACAAATTCGT 799103 24 100.0 40 NNNNNNNNNN ........................ TTGTGAAGTTCGAAACAACCAGAGAATGTAAGTCCTGATC 799167 24 100.0 44 NNNNNNNNNN ........................ TACCGGTAGCCCGCTCCTCTCATCTACGATGAGTACGGCATTAT 799235 24 100.0 43 NNNNNNNNNN ........................ CGGAAGATGGCATTTTTGTAACCTTGTTGTCGTAAGACACTGC 799302 24 100.0 39 NNNNNNNNNN ........................ CCCTACCACCTCAACTCACCCCGTTTCGTGTTTCGGTAA 799365 24 100.0 40 NNNNNNNNNN ........................ ATCATTAGCCCTCCACCATCTCCTATTATCAGTCCACCTC 799429 24 100.0 43 NNNNNNNNNN ........................ CAACAATGTCAATGTCAACTACTTCTACAAACGTTTGCACCCC 799496 24 100.0 36 NNNNNNNNNN ........................ CTTTTAGTCCTAGTTTTATTGCAATCATGTCAACAA 799556 24 100.0 42 NNNNNNNNNN ........................ TTGTCAAAATTTCATTAACGGAGTCCTATGTAAATTGCACGA 799622 24 100.0 44 NNNNNNNNNN ........................ CGAAAACTTTCGGCAGATTTTGATAAAACTTTTCTGTTATACCT 799690 24 100.0 40 NNNNNNNNNN .....................G.. ATTAGATTGGCAAAAAACGTATAAAGAGTATGAAATGCAT 799754 24 100.0 43 NNNNNNNNNN ........................ CATAGCAAATTTTCGTTATTCTGCGTTTGGCTTAAACTGCTTA 799821 24 100.0 39 NNNNNNNNNN ........................ ATATCCATAAGCACAATCAGTGCATTACAAAGTATAATT 799884 24 100.0 41 NNNNNNNNNN ........................ ATCTTGACCGTTTTCATTTTTCTTTCACAATACTATCTATG 799949 24 100.0 41 NNNNNNNNNN ........................ TTTTCTAGTTCTTCACAATTATACATAGGAATTATAGGTAG 800014 24 100.0 40 NNNNNNNNNN ........................ ACAGTCACTTAGGTATTTCTTTACCGTTCTTTCTGAAATG 800078 24 100.0 39 NNNNNNNNNN ........................ ATGCTGACATTAGAACAACCCGCAAAGATACCAGTACTA 800141 24 100.0 40 NNNNNNNNNN ........................ TGATGTGGACATAGCGGTATACGAAGAATAATTTGTCTAG 800205 24 100.0 39 NNNNNNNNNN ........................ GCACAAGCAGGTGCCTAAACGTGAAAAGGTATGACCGTA 800268 24 100.0 41 NNNNNNNNNN ........................ TATGAAAAATCTCTTTCAACATTTTCAATCCCATTACTTCT 800333 24 100.0 41 NNNNNNNNNN ........................ AAATTTAAATGAAAAACCGGGGGTTTAAAAATTTTACTGTT 800398 24 100.0 39 NNNNNNNNNN ........................ AATATGTAATTTATATCATCTCAGAGACAAATCAAATAC 800461 24 100.0 41 NNNNNNNNNN ........................ CTTTCAAATTCTTCACAATTATACATAGGAATAATAGGCGA 800526 24 100.0 40 NNNNNNNNNN ........................ ATCGTTATCCCCTCCTTCTCCAAGTATTTTGCCAATTTAG 800590 24 100.0 41 NNNNNNNNNN ........................ GCAAACATAGCACAGGGAATATACAACGGTATACTTGACAT 800655 24 100.0 44 NNNNNNNNNN ........................ AAATATTTTACTAGATATCCGTACCCTGCCGTTCTTGTTCTTCC 800723 24 100.0 38 NNNNNNNNNN ........................ TATTCTACAGCATATATCGACTTTAGCATTAACTTGAA 800785 24 100.0 37 NNNNNNNNNN ........................ ACATTATGCTATAAAATGATTAGTGAACAAAGAGCTA 800846 24 100.0 40 NNNNNNNNNN ........................ AACCCTCTCCCGACGGGACTGCCGGTTTCCCGTTACTCGA 800910 24 100.0 39 NNNNNNNNNN ........................ TTGAGAAAACATCATAGATGCCATTGATAGCTGAGCTGG 800973 24 100.0 44 NNNNNNNNNN ........................ ACTTGTGCAAATCCAAATTCGTCTTGATTCATGCAAAAATTATT 801041 24 100.0 44 NNNNNNNNNN ........................ TCTTCATTAACTCTCACTAACTTGACCTTGATATAAACATTTCT 801109 24 100.0 41 NNNNNNNNNN ........................ CTAACATATATAATTCTTCCTCGCACTCTAGCCCCAATCCA 801174 24 100.0 41 NNNNNNNNNN ........................ TCAATTACTAAAACATATTCCTGAATTTGTGGAAATTACAT 801239 24 100.0 39 NNNNNNNNNN ........................ TACAAATTCGCCGAAAGAAAATACAGAAAATTTAGATAA 801302 24 100.0 40 NNNNNNNNNN ........................ CTCGTTCTTCTGATTTCTTAACCACCATGATTGTTCTCAT 801366 24 100.0 38 NNNNNNNNNN ........................ CATAATACGTTATTTCACGTTCATTCTTGTCTGTTTTG 801428 24 100.0 43 NNNNNNNNNN ........................ TGACAACATGATTATATATTTGTAGTGAATCGATGTACTCAAA 801495 24 100.0 39 NNNNNNNNNN ........................ ATTATTTTCTTTGCCCCTTTAAGCAAAAAATATAATGCA 801558 24 100.0 41 NNNNNNNNNN ........................ CAAGATAATCATGTTCTGTTTTTAGAAATTTCATCAGTCTT 801623 24 100.0 38 NNNNNNNNNN ........................ ATAATGCTACAGACAATACCAAGTGATAGACTAGAAAA 801685 24 100.0 36 NNNNNNNNNN ........................ CGTGGTTCTTAGACCCCAGTGAATGGGAAAATGTAG 801745 24 100.0 40 NNNNNNNNNN ........................ GTTCAGTTATTTTCTCATATGGCAGTTCGACAGTCAACCG 801809 24 100.0 39 NNNNNNNNNN ........................ TCACTACACTATTTTTGTCATTTATCGTAACGTTTCTGA 801872 24 100.0 41 NNNNNNNNNN ........................ AGAAATAGCGGAACAGTTCAAGAAGAAGAATTAGAATTTGA 801937 24 100.0 43 NNNNNNNNNN ........................ TCAAACATATATTTCGTTCTCGTTAATAATGGTGTTACTGTAG 802004 24 100.0 39 NNNNNNNNNN ........................ CATAATCCCCAGGTCTTAGAAATACTTCATTTGGCTTTT 802067 24 100.0 38 NNNNNNNNNN ........................ ATGCAGCCGTTATTTTATTCAATGAACAATTTTTTCAA 802129 24 100.0 38 NNNNNNNNNN ........................ ATATGGGTAGGGTTTGAATTTCTCGTCATAAAGGGCGT 802191 24 100.0 41 NNNNNNNNNN ........................ TCTTCTCTCAATGGAGTAGCAGAAAGCCCTAGTCGTATCGA 802256 24 100.0 38 NNNNNNNNNN ........................ TTCTTGATATTGACAGCAAATGAGTGAAATGCACCGGC 802318 24 100.0 41 NNNNNNNNNN ........................ TTATAGACTACCTTGAGGATCATAAGTCACTTTTCACGCAA 802383 24 100.0 40 NNNNNNNNNN ........................ ATTGTGACTGTACTGTAGACGCAGTTAAAGGTATCAGTGT 802447 24 100.0 40 NNNNNNNNNN ........................ TCAATACCAGAATGTTCAACTATAATTACAGAGCCTACAC 802511 24 100.0 40 NNNNNNNNNN ........................ GTTGTAGAAATTTGTTGTAATGTGTTACCCTCATTATTGA 802575 24 100.0 39 NNNNNNNNNN ........................ AAGAATTGTCTGAAAATAACTGCATCTTCTCCTGAAGAA 802638 24 100.0 40 NNNNNNNNNN ........................ GGTTGTAATACGAATTGTATGCTTGTTTCAGCGACTAAGA 802702 24 100.0 39 NNNNNNNNNN ........................ CATCATATTCTCTGCTCCACGAAAAATGTCTAATTAATT 802765 24 100.0 41 NNNNNNNNNN ........................ ATTTCAAACCTGACTATAATTATTAATTTATAACTACTAAT 802830 24 100.0 39 NNNNNNNNNN ........................ ATTGTAATTGGTGTAATAAATGGAGTAAGAAATTGTGTA 802893 24 100.0 39 NNNNNNNNNN ........................ CGCTCTTCATATTTCTTTTTCGATAAATTCATTTTTATT 802956 24 100.0 40 NNNNNNNNNN ........................ AATCTTGACAATTCCGTATACGGTGGCGTTTTCTTGACGA 803020 24 100.0 40 NNNNNNNNNN ........................ TTTTCATTAAACATTTCTGATAATTTCTTTGCTACACTAA 803084 24 100.0 39 NNNNNNNNNN ........................ TTTTCGGGTCGTAAATTTTTAAGTAAGCAAGTACCACGT 803147 24 100.0 38 NNNNNNNNNN ........................ AATTTTAAAGCTGTTGTGTTACAAGATTACGATTATGA 803209 24 100.0 40 NNNNNNNNNN ........................ AAACTTATCAAACATTCGTTTGCTTTACTCATTCTTACAC 803273 24 100.0 47 NNNNNNNNNN ........................ TAACGCTAAGTAGACTGCAGTGTCTCCAACGTATGCACCTATGTCTT 803344 24 100.0 41 NNNNNNNNNN ........................ TTAGTTTTTATCGAGGGTCACACTTTAACGAAAATATCTCT 803409 24 100.0 39 NNNNNNNNNN ........................ TTTTATTTCGTAATTGTTTTTTTAAATCAATCCTGCAAA 803472 24 100.0 42 NNNNNNNNNN ........................ TTAACTTCAACTGTTTTCATTTTTCTTTCACAATACTATCTA 803538 24 100.0 40 NNNNNNNNNN ........................ TTGGAAGAGGCGACCCCGAGTCACTTTGTACTATTGACGA 803602 24 100.0 39 NNNNNNNNNN ........................ TAATTTTTTTCTTTCCCTTTTCGTCTTCCATCCTTTTAT 803665 24 100.0 40 NNNNNNNNNN ........................ GTCTTATCTACTTCAATCACCCAAAGGTCTTTATTTAATT 803729 24 100.0 40 NNNNNNNNNN ........................ AATAATGTTAAAAATAAATTATGGAGGATGGAATCCTAGT 803793 24 100.0 37 NNNNNNNNNN ........................ TATTATTTTTAAATGCCCTTGCTCTTCTTTCAGCGGG 803854 24 100.0 40 NNNNNNNNNN ........................ TTAAAATTCATTAGCTTTATCCAAATCAATGAGAAGCATA 803918 24 100.0 42 NNNNNNNNNN ........................ TATCGCCGTAAAGCTGGGGTTAAAGGAGGAGAAGAAGAAAGG 803984 24 100.0 39 NNNNNNNNNN ........................ CTTCGCTTGCAGTATCATCGAAACTTGCGACATAAAACT 804047 24 100.0 39 NNNNNNNNNN ........................ GTTTTTGCATAGTTAATATTGGTGATAAAAAAATGGAGA 804110 24 100.0 40 NNNNNNNNNN ........................ TACAAAACTCAAAGCCTATGTACTCGCCATCGTTAAATAG 804174 24 100.0 1 NNNNNNNNNN ........................ NNNNNNNNNN ========== ====== ====== ====== ========== ======================== 115 24 40 GTTAATCTACTATAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [452,759] Score: 0/0.18 # # Final direction: F [4.77,0 Confidence: HIGH] >NC_013769 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 855027 24 100.0 36 ATGCTATTAA ........................ ACGAATAAAAAGCTAGATTATTCAAAAGTTCATAAA 855087 24 100.0 38 AGTTCATAAA ........................ ATACTCTGGTAAAATTTGCCTTAGTCAAAGACTTCGTA 855149 24 100.0 34 AGACTTCGTA ........................ TTGAAATTCCTCTACTCGTGATGTATTACATGCT 855207 24 100.0 36 ATTACATGCT ........................ AAATGAATTATCATCTTTTTGATAGTCGTAGTAGTT 855267 24 100.0 37 CGTAGTAGTT ........................ AAGCACAAATTGAAGTTAAAAGAGTCAGCTCAACAAT 855328 24 100.0 36 GCTCAACAAT ........................ TATTATGACAAAAATCACGGGCAAAAGTGGAAAATT 855388 24 100.0 35 GTGGAAAATT ........................ ATCCATAACATTTTTTCGCCTCATCTATTGGTTTA 855447 24 100.0 34 TATTGGTTTA ........................ TCTGACGATTCTGTTAAACCTCTTCTCTTCTTCA 855505 24 100.0 35 CTCTTCTTCA ........................ CAGCTGATAGGTACGATCACTAACGGCGGTACTAG 855564 24 100.0 38 GCGGTACTAG ........................ TCCAAAGCCTCCAGTTCCTAAGCCTCCAGAACCTGTAT 855626 24 100.0 40 GAACCTGTAT ........................ TTTTTAGATTTGGGATAAAAAACGTGGATTCTGCTATGAA 855690 24 100.0 42 CTGCTATGAA ........................ ATTACTTTGGGTCTTCCCACGCCACCCCAAATGGGCTATGAA 855756 24 100.0 38 GGGCTATGAA ........................ TTATCGGGAAGTCCTTTATATGAGTGGCAAAATGACGA 855818 24 100.0 34 AAAATGACGA ........................ ATATTGAATAATCTTTTTGCTTAAACTCTATTTT 855876 24 100.0 35 ACTCTATTTT ........................ AATGCTTCTTCTGCTGACCATCCGCAGCCCCACAT 855935 24 100.0 35 AGCCCCACAT ........................ AAAATAAAATTAAGATATATTTTTATGATGACTCA 855994 24 100.0 37 TGATGACTCA ........................ TTTGTTCTAGTTCTCTGATTTTATCTATTGCTAATCT 856055 24 100.0 31 TTGCTAATCT ........................ ATTGATAAAATGATAATGCAGGAATTTCATA 856110 24 100.0 38 GAATTTCATA ........................ ACTCTAGATAATTTAATTGCAATTTTGACTGCTGACAA 856172 24 100.0 36 CTGCTGACAA ........................ TGTGAAACTTTTGATCTATATTGTTCAAAAAACGAA 856232 24 100.0 36 AAAAAACGAA ........................ TGTGAAACTTTTGATCTATATTGTTCAAAAAACGAA 856292 24 100.0 36 AAAAAACGAA ........................ AGAAGAATTAGATTTTGATTATGTAGTTGTAGATAA 856352 24 100.0 35 TTGTAGATAA ........................ GTCTACTCGGCTTTGGATGAGCAAATAAATATAAC 856411 24 100.0 39 TAAATATAAC ........................ TCCATCCTAGTTGGATCATATCCGAATGCCTGAAGTAAT 856474 24 100.0 35 CTGAAGTAAT ........................ ATGAGATTTTTGCACTTAATTTTTGCAAAAACATT 856533 24 100.0 36 CAAAAACATT ........................ TATTTGCAATTAAATGAGGATCAAATGATGCAGAAA 856593 24 100.0 36 GATGCAGAAA ........................ GGGGAATTGTTCTAGATGGCAGATTATTCAAATTTA 856653 24 100.0 39 TTCAAATTTA ........................ ATATATATTAGTGAAAGAGAAATGAGTGAGAAAGAAAAA 856716 24 100.0 35 GAAAGAAAAA ........................ ATTGAGATTCAAAATGATGTAAAGATGAAAAAAAG 856775 24 100.0 34 TGAAAAAAAG ........................ TTGAATTAAATGGCTTAGAGGCATTTGTTTCAAA 856833 24 100.0 36 TTGTTTCAAA ........................ ATGATGTAACTTTTTGAACTACTTATTCCAAAAATC 856893 24 100.0 36 TCCAAAAATC ........................ GAAATATAAATATGTCAGAAAATGAAAATGATAATT 856953 24 100.0 37 AATGATAATT ........................ ATTCAAAAGTGATTATAAATAAAGCAATATTACAACA 857014 24 100.0 35 TATTACAACA ........................ AGTGAAATTTCGAGAATTTTGGGAGTGAGTGTAAG 857073 24 100.0 36 TGAGTGTAAG ........................ AATTTTCCATTTTTGTCCGTGATTTTTATCGTAATA 857133 24 100.0 34 TATCGTAATA ........................ AATTAAGTAAAAATGCAAAGGAAAACAATAAAAT 857191 24 100.0 35 ACAATAAAAT ........................ ATTTACAAATAATCTGTCATATTGTGTAATTTTCA 857250 24 100.0 36 GTAATTTTCA ........................ GAAATATTCAAAGTTCTTTTTATTTAGAGGCGAAAA 857310 24 100.0 36 GAGGCGAAAA ........................ ATTGAAAAAATGAGGGGATAAAAAAATGAAAACTAT 857370 24 100.0 35 TGAAAACTAT ........................ TGTTCTCAGCCTTACACCACTCTGGTAGTCTCAAA 857429 24 100.0 34 TAGTCTCAAA ........................ ATTTCGTGAAAAATATCCGCCCCTTTCCTGAAAT 857487 24 100.0 TTCCTGAAAT ........................ AGGTCGTTTT ========== ====== ====== ====== ========== ======================== 42 24 36 GTTTTAGTTTCTTTTCGTTATTAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [71.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [88,707] Score: 0.18/0.18 # # Final direction: F [0.27,0.18 Confidence: LOW] >NC_013790 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1033123 30 100.0 36 NNNNNNNNNN ....T......................... ATCAATATCTGAATCAATATTGATATTATTCTTGAA 1033189 30 100.0 36 NNNNNNNNNN .............................. GCTCCAAACTTATCAGCATTTTCAGATTTATAATAA 1033255 30 100.0 34 NNNNNNNNNN .............................. TCATCATTTCCATCTACGATTGGTTCGTTAAAAA 1033319 30 100.0 37 NNNNNNNNNN .............................. TTACGAGAGTAACATTCTTCTGAAGCACAGTTGGTAA 1033386 30 100.0 37 NNNNNNNNNN .............................. AGGTAATAATATGAAATTACCACTACTGTTGGAGTAG 1033453 30 100.0 36 NNNNNNNNNN .............................. AAAACCATTCTCCAATAATATCTTCTGTGCATATTG 1033519 30 100.0 33 NNNNNNNNNN .............................. CACACTTTTGACACCATAATGGACTCTTTCTTG 1033582 30 100.0 35 NNNNNNNNNN .............................. ATTCATTCCCCCTTACTAATTCTACAAGTTTAAAA 1033647 30 100.0 37 NNNNNNNNNN .............................. TAGAGACAGTACAACTCAATATGGATTAAATAGTGAG 1033714 30 100.0 36 NNNNNNNNNN .............................. AGAATCTACGAGAATTATTCTATCATAACTGGTTAT 1033780 30 100.0 37 NNNNNNNNNN .............................. ATTCTGCTGATGGATTAAGTTGCACTTTATCTGCTAA 1033847 30 100.0 35 NNNNNNNNNN .............................. TAATCCTAACCTTTATCGGTAACTTGATATTGCAA 1033912 30 100.0 32 NNNNNNNNNN .............................. CCAAAAAAAACATAAAAAAAAGACTCGGTAGT 1033974 30 100.0 35 NNNNNNNNNN .............................. TCATCTATGTCTGCCCCATATTGTATGATTCCGTT 1034039 30 100.0 35 NNNNNNNNNN .............................. TCATCTATGTCTGCCCCATATTGTATGATTCCGTT 1034104 30 100.0 36 NNNNNNNNNN .............................. TATTTGGTAGAGTCAAACCACATCGGACAGTCATCT 1034170 30 100.0 34 NNNNNNNNNN .............................. ACAAAGTAGAATTAAATCTTGGTAACTGGGTAAC 1034234 30 100.0 35 NNNNNNNNNN .............................. GTTTGACTATCACTATCGTGGATGATATTGAGCAT 1034299 30 100.0 36 NNNNNNNNNN .............................. ATAAATTATTGTTTAATAAAGAACCTGATAAGTTTA 1034365 30 100.0 34 NNNNNNNNNN .............................. CTTAGTCCAGTATTGGCACCTATGACTAGTGTTA 1034429 30 100.0 35 NNNNNNNNNN .............................. GGTGCTGAGTTATATGATGTGGAAATTGATTTTAA 1034494 30 100.0 36 NNNNNNNNNN .............................. CAGAAAGCGATGTTTGGAGAGTTCTTTGAAGATGCT 1034560 30 100.0 36 NNNNNNNNNN .............................. TATGTATGTTCCGATGATTAGTATCATTGTGTTGAA 1034626 30 100.0 37 NNNNNNNNNN .............................. ACGGACATATAATTTATGATACAAGCAATGTATACAA 1034693 30 100.0 37 NNNNNNNNNN .............................. CAGCTTACAAAGAAATAATCGCTGATATCAGTAATAG 1034760 30 100.0 35 NNNNNNNNNN .............................. AATGACCTTATGGATAATACTAAAACAGTTAAAAA 1034825 30 100.0 34 NNNNNNNNNN .............................. TGTGCTAGTTAATGCTAATCCTGCTCCTTCATAT 1034889 30 100.0 36 NNNNNNNNNN .............................. TAGAACCTTTCAAGGAAGACATAGTCTGCTATTGTA 1034955 30 100.0 35 NNNNNNNNNN .............................. CTTGCAGAACTGGACTTGCTCCTAGAATACAATTA 1035020 30 100.0 36 NNNNNNNNNN .............................. ATACATATCAAAGACCCTCATATCCGAAACAATGTA 1035086 30 100.0 34 NNNNNNNNNN .............................. TCTTCGATTTCGTGGAATAATTGTGTGAAATCGA 1035150 30 100.0 36 NNNNNNNNNN .............................. ATGTCACCTTGTCCTTAAGTGGTGTCTTAAGTCCTA 1035216 30 100.0 34 NNNNNNNNNN .............................. CAGTAGAATTCGATGCACAAAGGACAATGAGTAG 1035280 30 100.0 36 NNNNNNNNNN .............................. GCTCCAAACTTATCAGCATTTTCAGATTTATAATAA 1035346 30 100.0 34 NNNNNNNNNN .............................. TCATCATTTCCATCTACGATTGGTTCGTTAAAAA 1035410 30 100.0 37 NNNNNNNNNN .............................. TTACGAGAGTAACATTCTTCTGAAGCACAGTTGGTAA 1035477 30 100.0 35 NNNNNNNNNN .............................. GCACTTGGAACTGCCGATGGTGTCGGAAACATCTT 1035542 30 100.0 36 NNNNNNNNNN .............................. GAAAAGACATCATGTCAACAATTATGAATTGGAAGA 1035608 30 100.0 35 NNNNNNNNNN .............................. TTGATGATTTTATACATTCTTTTAGTTTAGAACGT 1035673 30 100.0 36 NNNNNNNNNN .............................. CCAGAGTTGATAAAAAATGTACAAAACAGTTATTAA 1035739 30 100.0 36 NNNNNNNNNN .............................. GCGAGGAGTGCCTAAATTCACATTCAAGCAATACTA 1035805 30 100.0 36 NNNNNNNNNN .............................. GACAATGAAATTAAGAAATTAAAATCATTATTGGAT 1035871 30 100.0 35 NNNNNNNNNN .............................. CCTTACCATCGCTTCAGATTAGCAGAAACTACTGA 1035936 30 100.0 36 NNNNNNNNNN .............................. TCCAAGGTTGGCTACTTCAATGATACTGACTCTTTG 1036002 30 100.0 36 NNNNNNNNNN .............................. TTTACGTTGTCCTGTACCGCTTTCATCATCAACCAT 1036068 30 100.0 36 NNNNNNNNNN .............................. TCGCAATAACACCGAAATTATCTAATACGAATTCAT 1036134 30 100.0 36 NNNNNNNNNN .............................. TGCAGAAGCCCAGTTCCAAATCTTCAACTTGGACAA 1036200 30 100.0 36 NNNNNNNNNN .............................. TTGTAAATTTATAGGGAATAAGACTACTGAAGAAAG 1036266 30 100.0 37 NNNNNNNNNN .............................. CTTTAGTAAATGGGGGGGGCAAACTTTTAGTAAAATA 1036333 30 100.0 34 NNNNNNNNNN T.CAATCC..A...TG.............. CTGTGTGTATAGTTGAAGTTGCAATTGTTGATAT 1036397 30 100.0 35 NNNNNNNNNN .............................. GTGCAAGTCCTCCAATAGATTATTTCCTCCCCTAT 1036462 30 100.0 37 NNNNNNNNNN .............................. CCATATTCTCTCACCCAAATATAAGAATAGGATTTTG 1036529 30 100.0 35 NNNNNNNNNN .............................. TCCTCTGGAGCATAATAATTGAATCCTAATTTTAA 1036594 30 100.0 35 NNNNNNNNNN .............................. AATTCAAATCCAACGATGTAATTTCCATCGCTTAC 1036659 30 100.0 37 NNNNNNNNNN .............................. TATTTAGGATTGAAGAAATTGTTAATGATTGTATTGA 1036726 30 100.0 37 NNNNNNNNNN .............................. TGAAACAAGTTCAAGCCAAGTATAACACCTTTTCAAG 1036793 30 100.0 36 NNNNNNNNNN .............................. AAATTTATTGATATCTTATTTTTATGCCTTTTTTTA 1036859 30 100.0 35 NNNNNNNNNN .............................. TGTTCAGTCTCTACAATTAAGTCCTCTAGGTTTAT 1036924 30 100.0 39 NNNNNNNNNN .............................. CCGAACCTTACTTTGAAGATGAGGAAACCTTTGAAGATA 1036993 30 100.0 36 NNNNNNNNNN .............................. AAACAAGAAAACACTGCAACTAGTAATATTTTCTAT 1037059 30 100.0 33 NNNNNNNNNN .............................. TATGTTGATGCGAAATACCCTAACAGCTTCAGG 1037122 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 62 30 35 ATTTCAATCCCAAAATGGTCTGATTTTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.80,-0.90] Score: 0/0.37 # Array degeneracy analysis suggestion: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [28,1080] Score: 0.18/0.18 # # Final direction: R [0.41,4.68 Confidence: HIGH] >NC_013790 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1571964 37 83.8 37 AACTTTTGCA -.................AA..............--- TATTCAGTAACAATTTTTCTCGAAAAACAAGAAGGCA 1572038 37 97.3 36 CAAGAAGGCA A.................................... AAAAAGACACTTAAAAATTATGGAACAAAAAAAGGA 1572111 37 94.6 36 AAAAAAAGGA ..................AA................. TCTGATTCCCTTAACAAACTCACAATAAGGGAAAAA 1572184 37 100.0 35 AAGGGAAAAA ..................................... ATTAACAAGGAAACAGAAATGGAGATTAAGACACT 1572256 37 97.3 35 TTAAGACACT .........A........................... ATTTCATTTTTGGACTGATGTTGTTCTTGAAGAAA 1572328 37 100.0 35 CTTGAAGAAA ..................................... GTAGGTATATTTCTTATAGAATAAATAAAATTTAT 1572400 37 100.0 36 TAAAATTTAT ..................................... ACAATAACAGAGACAACAGTACTGAAGAAACAGTAA 1572473 37 100.0 35 GAAACAGTAA ..................................... ATGAAATCATTGAAACACTTGTTGAAATTCATGCA 1572545 37 100.0 36 AATTCATGCA ..................................... TATGGTAGTTGAGAAAGTTACAAAAGTTAGGGCTAA 1572618 37 100.0 36 TTAGGGCTAA ..................................... CCTTATTGAATGATACCAAAGACAAAGTGGACGAAT 1572691 37 100.0 35 GTGGACGAAT ..................................... AGAGTTAAAAGAGAGTTTAGCTATAGCAAGAGTTT 1572763 37 100.0 39 GCAAGAGTTT ..................................... AAGAGCTAATAAACAAACTAAAGAATATATGCTTAAGCT 1572839 37 100.0 35 TGCTTAAGCT ..................................... ATAAGATTAGTTTTGATATTATTAGATTTTTTTCT 1572911 37 100.0 37 ATTTTTTTCT ..................................... TCGGTTCTTCCGTCTCTCGTGTGTCCGTCGCGGGTGC 1572985 37 100.0 36 TCGCGGGTGC ..................................... CCTAATACCTATTGTAAATCTTTTCAATTTAAAAGA 1573058 37 100.0 35 ATTTAAAAGA ..................................... GACAAACTTTATACCTTAAGAAAGGTTCAAGGTGT 1573130 37 100.0 35 TTCAAGGTGT ..................................... CAATCATTCAGTATACGATAAAGAGTGTAACGACT 1573202 37 100.0 35 TGTAACGACT ..................................... AGATAATAGATAAATTGAGGTGTTAAATATGTTAT 1573274 37 100.0 35 AATATGTTAT ..................................... ATATCATTATAGACAAATATAGACAAAAAGAAATT 1573346 37 100.0 34 AAAAGAAATT ..................................... ATATCATTATAGACAAATATGACAAAAAGAAATT 1573417 37 100.0 35 AAAAGAAATT ..................................... GGCAAAATTGAACGATTTAAGCCAATACGACACTT 1573489 37 100.0 34 TACGACACTT ..................................... AATTAATGAAAATTATATAGGTGATTATTTATGT 1573560 37 100.0 35 TTATTTATGT ..................................... ATGAATTTGACTTAAGAAGCCAACTCTTAAGAAGA 1573632 37 100.0 35 CTTAAGAAGA ..................................... ATCAAAATGTAATGATGCCATACCATTATCATTTA 1573704 37 100.0 36 TTATCATTTA ..................................... ATTATTGTGACACAAAAAAGAAATTTCCTTGACAAA 1573777 37 100.0 36 CCTTGACAAA ..................................... CAAAAATACATTTTACAAAGATATGCTTAAAGTCTT 1573850 37 100.0 34 TTAAAGTCTT ..................................... CCCATATGGAAGTCGCGAGGGAATCAAAGAAGAG 1573921 37 100.0 34 CAAAGAAGAG ..................................... AAAGTTCAAGGGGTAACAAGACAAGCATACTTCG 1573992 37 100.0 37 GCATACTTCG ..................................... ATCAAAAAACTTTTATATTTTTTATTGGTGATAAAAT 1574066 37 100.0 37 GTGATAAAAT ..................................... ATATACAAGTTATAAAAACTTGAGAGTTATAAAAAGC 1574140 37 100.0 34 TATAAAAAGC ..................................... AGAGTATGGTTGTCACTTTAGGGAGGATTTCTAA 1574211 37 100.0 35 GGATTTCTAA ..................................... ACCTTAGAACTCTTAAAACAAGTAAAACATCGAGC 1574283 37 100.0 34 AACATCGAGC ..................................... GAAATACAGATTAAGCAATCAGGCATATAGACAA 1574354 37 100.0 36 ATATAGACAA ..................................... AAAGACACTTTAGATGTAATTGTTCGCTATAATGAA 1574427 37 100.0 35 CTATAATGAA ..................................... ATTATATTAAAACTCAAATAACTATAGATAGATTT 1574499 37 100.0 36 AGATAGATTT ..................................... TTAATGGACTTATAGTTAGTTATGACTTAAAAGCAC 1574572 37 100.0 TTAAAAGCAC ..................................... ATGACATGAGTTGTGATTTAAACGGCATCGTAAGCGAGTCACAAT ========== ====== ====== ====== ========== ===================================== 37 37 35 GTCACAATCCTTGTTTTAGTAGATTACTTTTTGCAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.27%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [228,773] Score: 0.18/0.18 # # Final direction: R [0.27,0.59 Confidence: MEDIUM] >NC_013790 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1553108 37 91.9 35 GCCAGAAAGA -......C....A........................ ACATATAGATAAATCCTTATGGATAGAGAGGGTAG 1553180 37 97.3 35 GAGAGGGTAG ............A........................ AAACTACTACACAGGTGTTAAAATCGGAGAAATTT 1553252 37 100.0 35 GGAGAAATTT ..................................... ACTATAAAGAGTTAAAGGCCAAAGCCTTTAAAGAT 1553324 37 100.0 35 CTTTAAAGAT ..................................... TCAATAGGAATGAAATAACAAATGACGCGCAGAAG 1553396 37 100.0 36 CGCGCAGAAG ..................................... ATAAGGGTATGTTAAAAACCCTAAAAAACTATAAAC 1553469 37 100.0 36 AACTATAAAC ..................................... TATGAAATATAAAGAGTTCTCAGATAAATGGGAGAA 1553542 37 100.0 36 AATGGGAGAA ..................................... AGAACGGAGGAATTTCTTATGACTAATGAAAAATCT 1553615 37 100.0 35 TGAAAAATCT ..................................... ACATTGCTAGACACATAGGAATGGTGGAATATGAT 1553687 37 100.0 35 GGAATATGAT ..................................... CGACTACGAAGCAACTATTAGCAGAATGACCAAAT 1553759 37 100.0 ATGACCAAAT ..................................... AGTCCAAAAA ========== ====== ====== ====== ========== ===================================== 10 37 35 GTCGCAATCCTTGTTTTAGTAGATTAGCTTTTGCAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [709,328] Score: 0.18/0.18 # # Final direction: R [0.18,0.41 Confidence: MEDIUM] >NC_013850 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 998981 28 100.0 33 NNNNNNNNNN ............................ CGACCACGATTGCGGCCATGATTAACTTTTTCA 999042 28 100.0 33 NNNNNNNNNN ............................ CCTACTGGAAAACTCAATGCCGAGGGATAACGA 999103 28 100.0 33 NNNNNNNNNN ............................ TTCGTTACGTTCACGTTAAACGTGATGGATTCA 999164 28 100.0 33 NNNNNNNNNN ............................ TATATGAATTAGCGTATAGTTCTAGGAACTTCA 999225 28 100.0 33 NNNNNNNNNN ............................ TCAGTCCAATTGGTGGGCAGGAGGGTTATTCAA 999286 28 100.0 33 NNNNNNNNNN ............................ GGGATGTGGTTTACTGCGATCCGCCTTACGAAA 999347 28 100.0 33 NNNNNNNNNN ............................ TCTGGCGTGGTCAGCGAGGTTGAATGCATCACA 999408 28 100.0 33 NNNNNNNNNN ............................ ATGTCGATCTGGATAAGGGCGTGATACACGTTA 999469 28 100.0 33 NNNNNNNNNN ............................ CTCGTCCCTTTCTTGAATCCGCCGGATGCTGGA 999530 28 100.0 33 NNNNNNNNNN ............................ CATACCCACACTGGACACCTTCGGCTCCCGGCA 999591 28 100.0 33 NNNNNNNNNN ............................ AGCCATATTTCCCAAATATCGGGCTGCACCAAA 999652 28 100.0 33 NNNNNNNNNN ............................ GTCACTGTACAACGGGATCAGCATGATCTCACA 999713 28 100.0 33 NNNNNNNNNN ............................ AGATACCCGAGCGGCGCCGGGAACTGGTGGCAG 999774 28 100.0 33 NNNNNNNNNN ............................ AAAGTAGAGCGTTAAATAACACACTGTAATCAG 999835 28 100.0 33 NNNNNNNNNN ............................ CGCCCTGACTAAAGCGCAGTCGGCTGTTAGCGG 999896 28 100.0 33 NNNNNNNNNN ............................ TCGTTATTCGTCATTTTGGTTCCATGGCCAATG 999957 28 100.0 33 NNNNNNNNNN ............................ CGTTAATCGAGGTGGTAAACCGCTGCGCCGCCG 1000018 28 100.0 33 NNNNNNNNNN ............................ TGGTGGGAATGCTCCAGCAAGAGGCTTTATCCG 1000079 28 100.0 33 NNNNNNNNNN ............................ TATTTGACGTAATCGGAAACGCTAATTTTGAAG 1000140 28 100.0 33 NNNNNNNNNN ............................ TTCGCGCTGGTTTTCTCATCTGCGGCACACAAG 1000201 28 100.0 33 NNNNNNNNNN ............................ AGCCAGTCCGCATCTCGCCAAAAACCGTTAACG 1000262 28 100.0 33 NNNNNNNNNN ............................ ACTACGAGCTAACCGGTGAGGATGAGTTCTGGG 1000323 28 100.0 33 NNNNNNNNNN ...........................A TCGACGATGTTCTGCGTGATGGTGATGTATGCG 1000384 28 100.0 1 NNNNNNNNNN ..........ATTCA.........G..C NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 24 28 33 TGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-10.10,-9.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [76.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [98,1342] Score: 0.18/0.18 # # Final direction: F [1.92,0.18 Confidence: HIGH] >NC_013798 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1507890 36 100.0 30 NNNNNNNNNN TAG................................. GGTAGAACAGCAATTGTACAACCTTGACCA 1507956 36 100.0 30 NNNNNNNNNN .................................... GGTTTTTCACCAAAGCAGCTTGAAGTCATT 1508022 36 100.0 30 NNNNNNNNNN .................................... TCGCCACGAGAAGTGATAGACATATAATGA 1508088 36 100.0 30 NNNNNNNNNN .................................... TGAGTTTCCGTTGCTGGTGCTCGGTGGTGT 1508154 36 100.0 30 NNNNNNNNNN .................................... TACACAACTGCTATAATATAATCATAAAGA 1508220 36 100.0 30 NNNNNNNNNN .................................... CAGAGAATGTAGCACCTGCTTTAGGCTCTT 1508286 36 100.0 30 NNNNNNNNNN .................................... TTTAAAACTATTTTCGACAGTCTTTAAAGA 1508352 36 100.0 30 NNNNNNNNNN .................................... AGAAAAGAATTAATTCAGATTTATGACAAC 1508418 36 100.0 30 NNNNNNNNNN .................................... ATGACTCAGTAACGATAACTTGAGGACTAC 1508484 36 100.0 29 NNNNNNNNNN .................................... CAACATATATTGCTGGCGGTCTTGACGGA 1508549 36 100.0 30 NNNNNNNNNN .................................... CATGCTTCGTGATAGCGGGAAAAATGTCAC 1508615 36 100.0 30 NNNNNNNNNN .................................... AGGAAATTGAAATTTCAAATGGTGAAGTTA 1508681 36 100.0 29 NNNNNNNNNN .................................... GTGGGTGACAGCGGATGGAAGCGAGCAAG 1508746 36 100.0 30 NNNNNNNNNN .................................... AATCGGAAGCAATTGTAAAACGCATTGACG 1508812 36 100.0 30 NNNNNNNNNN .................................... TGATTGGTGTATCATTTCGTTTTTCTTTTT 1508878 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 16 36 29 GTTTTACGGTTACTTAAATCTTGAGAGTACAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:69.44%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [158,66] Score: 0.18/0.18 # # Final direction: F [0.55,0.41 Confidence: LOW] >NC_013798 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1515490 36 100.0 30 AATACCAGAA .................................... ATTAATTTGTATTTGTGTTCGGGAGACATT 1515556 36 100.0 30 GGGAGACATT .................................... AAAAGCGTTATATTCATGCCAGTTGCAAGG 1515622 36 100.0 30 AGTTGCAAGG .................................... CCTCTTCAATTTCATAAGCGTCATTTTCCC 1515688 36 100.0 30 TCATTTTCCC .................................... AACGCGGCAGTAACCTACTCGACAAGGGCG 1515754 36 100.0 30 GACAAGGGCG .................................... GTAGTGCCACAGTTCGTTGCGGACTGGTAT 1515820 36 100.0 30 GGACTGGTAT .................................... AGCGATAGGGTTATCATGCAATTACATGAT 1515886 36 100.0 30 ATTACATGAT .................................... GAACTTGAAGAAGAGGTCGAACAGCTGAAA 1515952 36 100.0 30 ACAGCTGAAA .................................... CGCTCTTCATTGTTTAACTCTAAATGCAAT 1516018 36 100.0 30 TAAATGCAAT .................................... ATAAATCCAGAAATTGTGTTTAATGCGTTA 1516084 36 100.0 30 TAATGCGTTA .................................... ACTTCAAGAATTTCTTAACACTGTAACGGG 1516150 36 100.0 30 CTGTAACGGG .................................... GACAATGTCAGGCTTTTATGATATAATAAA 1516216 36 100.0 30 ATATAATAAA .................................... AGCGACGGTGAAAGCCATCTACAATCTCGT 1516282 36 100.0 ACAATCTCGT .................................... CTCGTGGACC ========== ====== ====== ====== ========== ==================================== 13 36 30 GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-5.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [144,133] Score: 0/0.18 # # Final direction: R [0.27,0.37 Confidence: LOW] >NC_013799 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1122544 30 100.0 36 NNNNNNNNNN .A.AAGGA...................... GTCCCCGGTGGACCAAACGCCTTTTTTACACGCATC 1122610 30 100.0 37 NNNNNNNNNN .............................. TTTATGTCTGCTATTTTCTCCCTTGTTGTGGGTGCCC 1122677 30 100.0 37 NNNNNNNNNN .............................. CGCCTCCAATAAAACAGGGTATAAATATGGGTCTCCG 1122744 30 100.0 37 NNNNNNNNNN .............................. ATTTAACATAGGCATAAGCGAGTAAGTGTTGATATAA 1122811 30 100.0 37 NNNNNNNNNN .............................. TTTATGTCTGCTATTTTCTCCCTTGTTGTGGGTGCCC 1122878 30 100.0 37 NNNNNNNNNN .............................. CGCCTCCAATAAAACAGGGTATAAATATGGGTCTCCG 1122945 30 100.0 37 NNNNNNNNNN .............................. ATTTAACATAGGCATAAGCGAGTAAGTGTTGATATAA 1123012 30 100.0 36 NNNNNNNNNN .............................. TGAGATATGTAGAGCAGCTACAGGAGGCAAAGTTCA 1123078 30 100.0 37 NNNNNNNNNN .............................. ATTTAACATAGGCATAAGCGAGTAAGTGTTGATATAA 1123145 30 100.0 36 NNNNNNNNNN .............................. TGAGATATGTAGAGCAGCTACAGGAGGCAAAGTTCA 1123211 30 100.0 36 NNNNNNNNNN .............................. ACACCTTCCAAGAAAGGCAGTCAGCGCCTTTGAGGT 1123277 30 100.0 37 NNNNNNNNNN .............................. GTGAAGCGCCGCCAAATGAATAGCGAGCCACATTTAA 1123344 30 100.0 37 NNNNNNNNNN .............................. GTTCTTGGTGGAGAGCGGGATGATAACGGGAACTGGA 1123411 30 100.0 38 NNNNNNNNNN .............................. GCATGAGCTGCAAGGATTTTCCAGCGAGCCACATTTAG 1123479 30 100.0 36 NNNNNNNNNN .............................. AGAGTATGTTTAGCTTTTCTTGGGTAGCCTTGACGA 1123545 30 100.0 37 NNNNNNNNNN .............................. TTCTTTCTCGTGTTCTTTCTTATTTTCCTGATATCGC 1123612 30 100.0 36 NNNNNNNNNN .............................. GTGCTCGGAAGACAAAGGCTCGTACAACCAAACAGC 1123678 30 100.0 36 NNNNNNNNNN .............................. TGTTCAAAGCTTTGAGTATCAAGTTCTAATACTTTC 1123744 30 100.0 36 NNNNNNNNNN .............................. AATACACTTTTCTTTGAGGCAGGGGGGGGATATACA 1123810 30 100.0 38 NNNNNNNNNN .............................. TCCTGCAACACTGTCATTTGCATCCAGCGCAATCCCAG 1123878 30 100.0 38 NNNNNNNNNN .............................. TCTTCACATTTTCAAAGAGTTTGGAATACCTACAGGGA 1123946 30 100.0 40 NNNNNNNNNN .............................. ATACACACAGAAGAGGTAATTTTAAAGACTTTGCAAGCCT 1124016 30 100.0 38 NNNNNNNNNN .............................. TCTTCACATTTTCAAAGAGTTTGGAATACCTACAGGGA 1124084 30 100.0 40 NNNNNNNNNN .............................. ATACACACAGAAGAGGTAATTTTAAAGACTTTGCAAGCCT 1124154 30 100.0 37 NNNNNNNNNN .............................. CAAATCCTTGAGAGGCAACCAAAAGAGATGTGGAACA 1124221 30 100.0 37 NNNNNNNNNN .............................. ACTCCTTATTGATCATAGCGTTTTTGATGATATATGC 1124288 30 100.0 37 NNNNNNNNNN .............................. CATAGGCATTGACGAAGGGGATATCTACTTTACCGCC 1124355 30 100.0 37 NNNNNNNNNN .............................. ATGAATATCTTTTTTTGTTTTTCGTAGGCGTGGTAGA 1124422 30 100.0 37 NNNNNNNNNN .............................. ACAGAAGAAAACAGCTCGCCTTCTATCCAAACTTTCC 1124489 30 100.0 37 NNNNNNNNNN .............................. GGGTATACTTGAGAGAGAAATTTCAGGACCAAAAATC 1124556 30 100.0 37 NNNNNNNNNN .............................. CCCGGGGGTTTAAAGGGGACCTTCACTTATATATACA 1124623 30 100.0 37 NNNNNNNNNN .............................. TATTCCACCCTTTTCCCTTTTGCCCTGCTGTTCTTCA 1124690 30 100.0 37 NNNNNNNNNN .............................. AAGAATTATGCATTTTTCCAGTTTTTGGAATTTTGCA 1124757 30 100.0 37 NNNNNNNNNN .............................. GTTCTTGGTGGAGAGCGGGATGATAACGGGAACTGGA 1124824 30 100.0 36 NNNNNNNNNN .............................. TTCCGGAAGCAAGCGAGGAACTTATTGACGGATTAA 1124890 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 36 30 37 GTTTCAATCCCTTATAGGCACCTAATAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.60,-2.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [76,163] Score: 0.18/0.18 # # Final direction: R [0,5.46 Confidence: HIGH] >NC_013849 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 1318858 23 100.0 43 GAGTATATCC ....................... TCGTGAAGTATCCCGCCTTCTTCTTGGGAGGTGATTTAACGAG 1318924 23 100.0 41 ATTTAACGAG ....................... ACATACTCACCACCTCTCACATTCGTGGAGACAATAACCCA 1318988 23 100.0 39 CAATAACCCA ....................... CCAATTGGAAATTTCGTTGAAAGTTCGAAAAAGTTTTTA 1319050 23 100.0 40 AAAGTTTTTA ....................... TCGCAACCTTGTTCGGTCTGTATCTAATCACCCTACCAAT 1319113 23 100.0 40 CCCTACCAAT ....................... GATTATGGCTTCAGATGGGTTTGGAACTACTTTAAGAGTG 1319176 23 100.0 38 TTTAAGAGTG ....................... AAGCCATAGTATTCAAGCAGGTAACCATGCCTTCCTAC 1319237 23 100.0 40 GCCTTCCTAC ....................... TCTTATTTCCCTCCTGTAAACCTCTTCAAAACCTCGTCTG 1319300 23 100.0 39 ACCTCGTCTG ....................... GCGATTTGGCTACTTTCTTGTAGCCTATCAGCTCGTGAG 1319362 23 100.0 42 AGCTCGTGAG ....................... ACCTGATCGTCCGTACCATCACAAACGTAATCTCCTGACTTA 1319427 23 100.0 41 TCCTGACTTA ....................... TAGAGATACACTGTTCTCCTTCTTACCCTCTTAACCTTAGG 1319491 23 100.0 42 TAACCTTAGG ....................... GTCTATTGTGTCTTTGTTGGTTATCTTCTTGAAGTCTTCCAA 1319556 23 100.0 43 AGTCTTCCAA ....................... ATATTATCCCTCCAGTGCAGCTTTTCTTTTTAGATAGTAGGGA 1319622 23 100.0 40 ATAGTAGGGA ....................... TTGTCTGTTCCAAATGGAACTTCCAGATCGTCGGCAAAAT 1319685 23 100.0 40 TCGGCAAAAT ....................... AAGAGAGAGTCTAATCTATGCAGTTATTGTGAATTTATAC 1319748 23 100.0 42 GAATTTATAC ....................... ATCGTAGGGACAGAACCGGGTAGCTTTCGAAATACTTGGTTG 1319813 23 100.0 42 TACTTGGTTG ....................... AGAACAGTTGCTGCTGCCGGCTTCTTTTGAGGTAAGAATGGG 1319878 23 100.0 42 TAAGAATGGG ....................... TTGGAGGCTTACCGATGCTGTTGGAGCTTTACATAACAGTGT 1319943 23 100.0 40 ATAACAGTGT ....................... ACCTTTTTAAATTCTCTATCCACGTTTGTACTGTAGGAAA 1320006 23 100.0 40 CTGTAGGAAA ....................... TGTTGTAGGCTTCGTTAGGCGTTCTTGCCCTAATTTTGGC 1320069 23 100.0 41 TAATTTTGGC ....................... CTCATCGCCCATCCACCTCCTCATAACCAACTCCGCAATTC 1320133 23 100.0 42 TCCGCAATTC ....................... CTTCGTGTCCAAGTTGTAGAGCCACAACGCTATCCTGTACCT 1320198 23 100.0 TCCTGTACCT ....................... TCAAATTCGC ========== ====== ====== ====== ========== ======================= 22 23 40 CTCGATGAAAAGAGGATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.87%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [336,2] Score: 0.18/0.18 # # Final direction: F [4.95,0 Confidence: HIGH] >NC_013849 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 1597287 23 95.7 39 AGGTGTTAGA -...................... CGATCAGCTCGTTCATTCTTCATCCTCCTCTTCATCAGC 1597349 23 100.0 43 CTTCATCAGC ....................... TCTAATTTTTTGCGAGGTGATTGTGATGGTGCAGGTGACTGTT 1597415 23 100.0 41 GGTGACTGTT ....................... TTGATCTTCACGTTCAACACCTCACATCAGGTCGTGCTTCT 1597479 23 100.0 41 TCGTGCTTCT ....................... TCTCGAGCTGTGGTCACAAGGGGGACGTCTCCCTTCCCTAG 1597543 23 100.0 41 CCTTCCCTAG ....................... AGGGATTAAGAGGGAGATACTGAGAGATTATAGGAGACTAG 1597607 23 100.0 41 AGGAGACTAG ....................... ATTCTGATCGCTAAAGAGCCCGATGCTTTCAAAAAGCTCTA 1597671 23 100.0 43 AAAAGCTCTA ....................... TCGTTAAAATCATCGACAAAAGGACGCTTGAAGACTTAACGAT 1597737 23 100.0 42 ACTTAACGAT ....................... CAAAGAGATTCTTTTGAAGAACTTACACAATCTTTCTTCTGA 1597802 23 100.0 41 TTTCTTCTGA ....................... GGTATATTATTGGTGACGGACATTTGTCTATTAGGGGTAGA 1597866 23 100.0 41 TAGGGGTAGA ....................... TATTGGTGTATCCCCCCACCAGACAAACAAAGCACTCTCAA 1597930 23 100.0 39 GCACTCTCAA ....................... CTGGGACGTTGCAGCACTGGAAATACGAGATGCTCAAGA 1597992 23 100.0 39 ATGCTCAAGA ....................... ACTTAAATAGTTCAGGGTTGCAGTAAGTATTGAGGTGGT 1598054 23 100.0 44 TTGAGGTGGT ....................... GCAGGATGGAAGAGTTCTGTAAAGAGAACAAGGATCAGCTACAG 1598121 23 100.0 40 TCAGCTACAG ....................... GTCAGACAAAATAATTATAACCGAATGGGTATACATAACA 1598184 23 100.0 40 ATACATAACA ....................... TAGCACCAGACGTAGACCTCGTGATAATAAAGGCGTTCTA 1598247 23 100.0 40 AGGCGTTCTA ....................... ATTCACGCTGTTTTCCGCCACGCTGAAGACTACAACGAGA 1598310 23 100.0 39 TACAACGAGA ....................... AATACTTTAGGACTCCCTCTCCCGCTGCGTTTGTTTGCC 1598372 23 100.0 41 TTTGTTTGCC ....................... CTGCCATACTCATCCCCTTATCCATTTAGCTATGCTGAAAA 1598436 23 100.0 ATGCTGAAAA ....................... GGTTATACTC ========== ====== ====== ====== ========== ======================= 19 23 40 CTTTCAATCCTCTTTTCATCGAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.87%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [3,381] Score: 0.18/0.18 # # Final direction: R [0,5.36 Confidence: HIGH] >NC_013849 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 1578276 23 100.0 39 TAATTTCTAT ....................... TTCGTCATAGCAGCAGATTGGAGCATCGATAACATCCAG 1578338 23 100.0 41 TAACATCCAG ....................... CTTCGCCTCCTTCTACCCATCTGTTTGAGCTTTCTAATTCC 1578402 23 87.0 43 TTCTAATTCC ....................--- AAGTTCCACCAGAATATGTTCCACCATATTCTACGTTCACCAC 1578468 23 100.0 39 CGTTCACCAC ....................... TTTTAGGTCTGACGAAGATGTCGAGCCACTTGGATCCAG 1578530 23 100.0 40 TTGGATCCAG ....................... CGAGTCCTTATGTCGATAAAGAGTACGGAATGGTTTACAG 1578593 23 100.0 40 TGGTTTACAG ....................... AATAATAAAATGAGATTTGGCATTCCTCTGGAAGCATACA 1578656 23 100.0 40 GAAGCATACA ....................... AGAAAGTTCATCCTGATGCCAAAAGCCGATCTGTTGTCGA 1578719 23 100.0 40 CTGTTGTCGA ....................... ATTCTGGCAGATTTTTGCCGCCGTTTGAGGTTGATTTTTA 1578782 23 100.0 42 TTGATTTTTA ....................... CCACTTATGATTATCGAACGCTCACCGAGTCCATAAAACCAT 1578847 23 100.0 42 ATAAAACCAT ....................... CAATCACACAGATCCCGTACACGATCAGTCCGACGATTGACC 1578912 23 100.0 ACGATTGACC ....................... GGTTATACTC ========== ====== ====== ====== ========== ======================= 11 23 40 CTTTCAATCCTCTTTTCATCGAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.87%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [9,215] Score: 0.18/0.18 # # Final direction: R [0,5.36 Confidence: HIGH] >NC_013849 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 273661 23 95.7 41 TTTGATGAGT -...................... CAAAAACTTCTTGAGGAGAAGGGAAACCCAGAGGAGTTCAA 273725 23 100.0 43 AGGAGTTCAA ....................... ATTCTTTTGCTTCCGCTGATAGTTTTGCTGGCACTAATTCCTC 273791 23 100.0 45 CTAATTCCTC ....................... CGGGATAGGAGGCACAGGCAGATTTATGGACATAATGGTGACTAC 273859 23 100.0 41 TGGTGACTAC ....................... AAGGAATTAAAAGGAGTCAAAACGAAGCTGGACGAATACCG 273923 23 100.0 40 ACGAATACCG ....................... TAAATGCCTCAGTTCGGTGGTGGAGGTGGTGTTGGTATAA 273986 23 100.0 41 GTTGGTATAA ....................... TGTCTCCAGCTTTCAGACTGGAGTTTTCGCAACTCCTGCTC 274050 23 100.0 40 ACTCCTGCTC ....................... AATTGGAAGAAAAGACGAAACTTATGACGACATTATACGC 274113 23 100.0 43 CATTATACGC ....................... CGTTCTACCTGAACCATTCAACTACAGATGCATCCATTATAAT 274179 23 100.0 40 CCATTATAAT ....................... ATGAGCACATCAGGTCTCCCCTCTTCGTTTTCCTGATACC 274242 23 100.0 TCCTGATACC ....................... GGTTATACTC ========== ====== ====== ====== ========== ======================= 10 23 41 CTTTCAATCCTCTTTTCATCGAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.87%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [141,291] Score: 0.18/0.18 # # Final direction: R [0,5.09 Confidence: HIGH] >NC_013849 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 676127 23 100.0 38 AGAATGAATT ....................... TGCTCCGTGAAATTCCCCATCTGATCTACGGTATAATA 676188 23 100.0 41 CGGTATAATA ....................... AGGAGATTTGTGTTGAGTAGTCTGGTAATGCCGTGCAGTGA 676252 23 100.0 39 CGTGCAGTGA ....................... CGATTGTAGCGGTCCGTCGTGGTCTCACTACCGCTGGGA 676314 23 100.0 42 ACCGCTGGGA ....................... ACATCGAACCACTTATCAGAGACAGAATTCCGCCAAACGTAT 676379 23 100.0 41 CCAAACGTAT ....................... TTGATTGGGGACGCGGGAACTGGGAAGACGACGGAGTTGGT 676443 23 100.0 39 CGGAGTTGGT ....................... CGGTTTTGCCTTGAACTGTCAATCTCTCGCTGAATGCTC 676505 23 100.0 44 CTGAATGCTC ....................... GGGAGGGTGGCAAACACCAAGCGAGATTGCAGCACATCATAGAG 676572 23 100.0 40 CATCATAGAG ....................... ATTTTTAAATAAAAGGGGGTAGATGCGTGAGAAGGCTTAG 676635 23 100.0 39 GAAGGCTTAG ....................... GAACGAGATGCTGAAGCTCGCCGAAGTTTCAGGAAAGTA 676697 23 100.0 40 CAGGAAAGTA ....................... CCAGAGGAGAAGCGCTCGGACATTACTGCATGAACTGCAT 676760 23 100.0 41 TGAACTGCAT ....................... ATTCCAGCACCGTTGTTGAAAGAGCTGTTATCGAGGTGATT 676824 23 100.0 40 CGAGGTGATT ....................... CAGAGTCGGAGGAAAATTGGTTGATGTTAGATACCTTATC 676887 23 100.0 41 ATACCTTATC ....................... CCATTGGAGGATTAGAGGAGAAGCAAGATGTAACAATCTTG 676951 23 100.0 40 AACAATCTTG ....................... GGCGAGGATGGGAAGCTAACTCCAACAATTTTCAGAGAAC 677014 23 100.0 40 TTCAGAGAAC ....................... GGTCGAAAACTCTGATGTCCGATCCATCTGATTTAACAAG 677077 23 100.0 41 ATTTAACAAG ....................... AAGAGAAGGTTTTACAAACTACGAACGAGAGTTAGAAGGGG 677141 23 100.0 42 TTAGAAGGGG ....................... CTAAAGCAGGGAGGTTTCCCATAGGGAAACAATCTTGTAACA 677206 23 100.0 40 TCTTGTAACA ....................... TTGGATTGGTGGAACATCTCTATTGATTTTATAGCATCTC 677269 23 100.0 40 ATAGCATCTC ....................... CATTAGCAAATACTGTGTAATCAGCCGTTGTCGTTCCAGC 677332 23 100.0 39 TCGTTCCAGC ....................... TTCACGCCCGCTCCCACGAAGTCTGGCTTGGTTTTCTCA 677394 23 100.0 39 GGTTTTCTCA ....................... CAAAGTAAATGTCTGCTTCTGTTGTTGTAGAGCCTCCAT 677456 23 100.0 41 GAGCCTCCAT ....................... CTCACACAGTTGCGAAATGGGGCGAGGATTGGCGAGGCGAT 677520 23 100.0 44 GCGAGGCGAT ....................... CCGGAAGTTAAAAAGCTCCAGCCGATAAAGTGCGGAATTTGCGG 677587 23 100.0 39 GAATTTGCGG ....................... AGTGGTACAAAGAATACAAAGAGGCTTTAGAGGAATACA 677649 23 100.0 42 GAGGAATACA ....................... ATACCACAGAATCAATTGAAAGCCCAGGAACAGTGGCAATTG 677714 23 100.0 45 GTGGCAATTG ....................... TCAAGGACGAGAAAATAAGCAGAGAACTTAAAAGAAAACTCCTGA 677782 23 100.0 AAACTCCTGA ....................... GGTTATACTC ========== ====== ====== ====== ========== ======================= 27 23 40 CTTTCAATCCTCTTTTCATCGAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.87%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [64,272] Score: 0.18/0.18 # # Final direction: R [0,4.68 Confidence: HIGH] >NC_013849 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 824286 24 100.0 50 AGAATGTACC ........................ ACAGTTTCCCTTACCTTGAACCCGAATTTTTCGAGTTCTTCGAGCTTATA 824360 24 100.0 41 CGAGCTTATA ........................ ACGCAGAGGGAGGTTACGGTCATAGAGGACATACAGCTTAT 824425 24 100.0 40 TACAGCTTAT ........................ CTGACTATTTAAGGCAGAACGGCTATGCTGTGTTTGGCAG 824489 24 100.0 41 TGTTTGGCAG ........................ AGTGGGCGTGGTTTGGATTAGCAGGCATGAGCTTAGCGAAA 824554 24 100.0 41 CTTAGCGAAA ........................ TTGAAGGCTATAGTGGACGAGGGCTGGGAGTGGATATTTAG 824619 24 100.0 42 GGATATTTAG ........................ GTGTGATAGCTGCGGGAATACCGGTCATCGTTAATATTCTAC 824685 24 100.0 41 AATATTCTAC ........................ TGAAAGGAAAAAACTGCTGTATTATGCTCGGCGTAACGAAC 824750 24 100.0 41 CGTAACGAAC ........................ ATATGAGCAAGTATGAAAAGAAGGTCAGAGTAGTGGTTGAA 824815 24 100.0 39 AGTGGTTGAA ........................ CGAGGTTGTAAGAATTGGTGGAGTTGAGGTATGGATAAG 824878 24 100.0 40 TATGGATAAG ........................ CTGGAAGGAGTCACCTACACCGAGGAGACTGCAACAATCA 824942 24 100.0 41 GCAACAATCA ........................ CGGAGCCAGAGGTGGAGTTGACATTCCGGCGGAAGACAAGA 825007 24 100.0 43 GAAGACAAGA ........................ CAACACATATATTACTTACCCCTAAGCAGAGACAGAATGAAGC 825074 24 100.0 40 AGAATGAAGC ........................ TGGAACCACGAGTCATCAGAGACGCCATCGAGAGAGCCAT 825138 24 100.0 42 AGAGAGCCAT ........................ TTTTCTGCTACGACTTTCTCGAAAGTGTTTCAACCAAGTACA 825204 24 100.0 40 ACCAAGTACA ........................ GAAGAATTGAGAAGAGTTTTGGAGACGAAGATATTTTGAA 825268 24 100.0 42 ATATTTTGAA ........................ CAGAAAGAAGGCAGAACGAATTAAGGAATTGAAAAGGAAAAA 825334 24 100.0 43 AAAGGAAAAA ........................ TTATCTCTATCTTCCCTGAGGGCATTTCTTGCAGCCCTCATAA 825401 24 100.0 GCCCTCATAA ........................ GGTTGTACTC ========== ====== ====== ====== ========== ======================== 18 24 41 GTTTCAGTCCTCTATTTGAGATTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.50%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [201,421] Score: 0.18/0.18 # # Final direction: R [0,0.45 Confidence: MEDIUM] >NC_013851 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 756777 29 100.0 32 NNNNNNNNNN ...C..G...................... GATTCCTGGATGAGCCTTGTTTCGGTCCCAAT 756838 29 100.0 32 NNNNNNNNNN ............................. TGGGCGTCGACGCGATCGCGCCATTCGGTGTC 756899 29 100.0 32 NNNNNNNNNN ............................. CGCACCCAGCCGAGGATGTATCGAGAAAAATC 756960 29 100.0 32 NNNNNNNNNN ............................. CGCCAAGCGCCCACGGTCGGCCACATCTGGAA 757021 29 100.0 32 NNNNNNNNNN ............................. GGAACCAAGATCCTCCGTGACGCGGACCCCGA 757082 29 100.0 32 NNNNNNNNNN A............................ CCGGCGCGGGACTCGGCTCCACATCGATGGGG 757143 29 100.0 32 NNNNNNNNNN ............................. TCGGTGCTGGACTCGGGAATATTCAGCGCGGT 757204 29 100.0 32 NNNNNNNNNN ............................. TGCAGAGCGGTCACTGATTCTGGAACAGAGGG 757265 29 100.0 32 NNNNNNNNNN ............................. TTCAGCGCGGTCTTGAACGCCTCGAATGTGAT 757326 29 100.0 32 NNNNNNNNNN ............................. GTGTACACCACCTTTTCTAAGTAAAACAAGCA 757387 29 100.0 32 NNNNNNNNNN ............................. TATTGTCAGACCCATCAGAAATAGACCATAGC 757448 29 100.0 32 NNNNNNNNNN ............................. CTCGACAGCAAGCGCTTCCTCTTCCAGCAGGA 757509 29 100.0 32 NNNNNNNNNN ............................. GACGGCAGGATAGTACGATGCGCGATTTCGTC 757570 29 100.0 32 NNNNNNNNNN ............................. CTGTGATGCGTCGTTTTTTATTCCTGATTTTA 757631 29 100.0 32 NNNNNNNNNN ............................. AGGTCAGAGCCGCGCAGGGCCAAATACGCGCG 757692 29 100.0 32 NNNNNNNNNN ............................. GCGGCATCGGTGCCGTAGCCGGCCTCCAGCGC 757753 29 100.0 32 NNNNNNNNNN ............................. GACATCACGCCGCCGATCTGCGTGCCGTCGAG 757814 29 100.0 32 NNNNNNNNNN ............................. GGTCTGACGAATGGTTTGAGGCCCGCTGCGGA 757875 29 100.0 32 NNNNNNNNNN ............................. CGCGCCAATTTGCACCGCGCAACGCCGGACGC 757936 29 100.0 32 NNNNNNNNNN ............................. CCCCTTACGCGGCTTGGACGTATCCTCACAGC 757997 29 100.0 32 NNNNNNNNNN ............................. TTATAGCGCGATGTGGCTCCAACGGCATCGAG 758058 29 100.0 32 NNNNNNNNNN ............................. TCGGACTGGGATTTGGGGATAAGGTCAAGAGG 758119 29 100.0 32 NNNNNNNNNN ............................. AAGAGCCAGAAATCAAGGCCTAAATGCCGGTG 758180 29 100.0 32 NNNNNNNNNN ............................. CAACCTGCGTCTAATCCTGGAGAATGACCCCG 758241 29 100.0 33 NNNNNNNNNN ............................. GCGCCCTGGCCCGATTCCGGAGCCAGGCACCGA 758303 29 100.0 32 NNNNNNNNNN ............................. GTCATGCGCCGTCGGCACAGACGAGAACGCTA 758364 29 100.0 32 NNNNNNNNNN ............................. GCGAGCGGTGCGCGGGTGCCGGTCTTGGTCGC 758425 29 100.0 32 NNNNNNNNNN ............................. CAACTCTACGTTTGCAATTCGATTGCGCAATT 758486 29 100.0 32 NNNNNNNNNN ............................. TATCTGTGAGGCCACTAGTCAACGACTAATCG 758547 29 100.0 32 NNNNNNNNNN ............................. GAGGTATTCATTCATTTTTGAATCGATCTGAC 758608 29 100.0 32 NNNNNNNNNN ............................. TTTTCTCGCTCATTGGTCGCCTCGTGACGCAT 758669 29 100.0 32 NNNNNNNNNN ............................. TTGTTCGCGGCCCTGCTCAAGAATGCGGGCCA 758730 29 100.0 32 NNNNNNNNNN ............................. TCTACATCGCCATGAAGGGCGCTAACATCCTG 758791 29 100.0 32 NNNNNNNNNN ............................. CCGGACATGGATTACAGCGCACGGCGCAGCCA 758852 29 100.0 32 NNNNNNNNNN ............................. AGCCGTCTGCTGGGCCTGGGCGGTCTCAGGGG 758913 29 100.0 32 NNNNNNNNNN ............................. TGAGCGGGAAATTGGGTCACGGTGTCGCCGGA 758974 29 100.0 32 NNNNNNNNNN ............................. ATTCGCGATCGGGCGCAAGAGGAGGCTGAGAC 759035 29 100.0 32 NNNNNNNNNN ............................. GCCCCGGATCTGGCCATGCAGCCGTATGCCTA 759096 29 100.0 32 NNNNNNNNNN ............................. ATCACCTGCTCGGGTTCTGCGATTCCCCCACC 759157 29 100.0 32 NNNNNNNNNN ............................. CAGCCGCCCGCCGAAGGATTGATACAGGATAA 759218 29 100.0 32 NNNNNNNNNN ............................. TCCTGTTCCTCGTGGCTGGCGATGGCTGTGGC 759279 29 100.0 32 NNNNNNNNNN ............................. AACGCCCTACAGCTCGCGCGGCAGAACGAGAT 759340 29 100.0 32 NNNNNNNNNN ............................. GAGGCCCTGCCTGCGTATCACGGTGGGCAGGG 759401 29 100.0 32 NNNNNNNNNN ............................. GTGCCTTCGCCCGTCCAGCCGGTCCAGCCATG 759462 29 100.0 32 NNNNNNNNNN ............................. AGCCGGGATCTTGACACCGCATTTGAGCAGAT 759523 29 100.0 32 NNNNNNNNNN ............................. GCGATAAAGCGCTTGTTCGCGCTGTTCGATAC 759584 29 100.0 32 NNNNNNNNNN ............................. TCACCCTGCGCTTCCTGATCCTGGAGTAAGGC 759645 29 100.0 32 NNNNNNNNNN ............................. ACAAACGAGGGCGCGGATACCGACCGCTGGAT 759706 29 100.0 32 NNNNNNNNNN ............................. CCGGGTCTTCAAACGTAGTGGAGCCAATAACA 759767 29 100.0 32 NNNNNNNNNN ............................. TCAGCCATGTCGGTCGTCAGATCCTGCAAATT 759828 29 100.0 32 NNNNNNNNNN ............................. CCGGGTCTTCAAACGTAGTGGAGCCAATAACA 759889 29 100.0 32 NNNNNNNNNN ............................. GTATTTGATGCGGTCGAATACCTATTCAATAA 759950 29 100.0 32 NNNNNNNNNN A............................ ACCTCTGAGCCGGGGTTAATGGTGCTCATGGC 760011 29 100.0 32 NNNNNNNNNN ............................. ACGGCACGCAGCGAGACATCTGCCTCCAGCAC 760072 29 100.0 32 NNNNNNNNNN ............................. CGGTAGGTCTCGTCGTCGAGACCCAGATCCTT 760133 29 100.0 32 NNNNNNNNNN ............................. CCACGTATAGGAAGCGCGAAAATCAGGGCGCG 760194 29 100.0 32 NNNNNNNNNN ............................. ATGTTCGTGGTTTAGTGGGTAGGCATATTCAC 760255 29 100.0 32 NNNNNNNNNN ............................. ACCGTGGATCCGGTCGGACGCTGGCGATAGAC 760316 29 100.0 32 NNNNNNNNNN ............................. CCGCCCAGACCGTCCAGGAGGCTCCTGGCGGC 760377 29 100.0 32 NNNNNNNNNN ............................. GCTGAATCCCCGGATGATGGGGCGCGGGTCGC 760438 29 100.0 32 NNNNNNNNNN ............................. ACGCCGAACGGCTCTGGGCGTGCTCGGGTCGC 760499 29 100.0 32 NNNNNNNNNN ............................. TTCACCGGAATCGGGAAAACGTCGGGATCGAC 760560 29 100.0 32 NNNNNNNNNN ............................. GATCAGAGTAATCATGCGAGTGACGCCAACCG 760621 29 100.0 32 NNNNNNNNNN ............................. TGTCTTATATCTCTAATTCGCAGTCCATTATG 760682 29 100.0 32 NNNNNNNNNN ............................. ACTTTGATATCCTGTCTTTATCATTAAAGAAC 760743 29 100.0 32 NNNNNNNNNN ............................. ACGGCACGCAGCGAGACATCTGCCTCCAGCAC 760804 29 100.0 32 NNNNNNNNNN ............................. CGAGGACTGCAAGTCCTGGCTGCGCTCGCCGA 760865 29 100.0 32 NNNNNNNNNN ............................. GCAAGGTCCAGAGCACGAAAGAAATTAGGCGG 760926 29 100.0 32 NNNNNNNNNN ............................. GAAATCCATTTCGGGCGAATCCAACGGGGCGT 760987 29 100.0 32 NNNNNNNNNN ............................. AGCGATTTTTTCGATTCACTGCCGACTGTTTA 761048 29 100.0 32 NNNNNNNNNN ............................. GGCAGCGAGTTCCTCGACGAGATGGTGCGCAC 761109 29 100.0 32 NNNNNNNNNN ............................. AACAAGGCTGATGCGACCCGCGCGAAAGCGTT 761170 29 100.0 32 NNNNNNNNNN ............................. TCGAGCAACCGCAGCGCGTTCGGGAACTGCGT 761231 29 100.0 33 NNNNNNNNNN ............................. GGTGGCGCTGCTGTGCTATGACGAGCTGACGCA 761293 29 100.0 32 NNNNNNNNNN ............................. TGTCATTCCTCCCGCCCGGCGCAGTCATAAAG 761354 29 100.0 32 NNNNNNNNNN ............................. CGGAGCAAGGCCGCAGTAGCCGCGACGGCGAG 761415 29 100.0 32 NNNNNNNNNN ............................. ACCGAATCCCCGACGACCCCAGGATCCCAAGA 761476 29 100.0 32 NNNNNNNNNN ............................. CGGCTGTCATCGCATTTATGGGTCTCAAGCGG 761537 29 100.0 32 NNNNNNNNNN ............................. GTACGGACGCAGCGACTCTTGGTGGCGCTGTG 761598 29 100.0 32 NNNNNNNNNN ............................. TTGTATCTATCTGAGTAGGTGTTCCAATGAAC 761659 29 100.0 32 NNNNNNNNNN ............................. CTGTCCTGATGTCGGCGACTCGGGACTCTGAA 761720 29 100.0 32 NNNNNNNNNN ............................. CTAAAAGCATCCCGAGGGAGCGTATAAGGCCG 761781 29 100.0 32 NNNNNNNNNN ............................. AGCGTCAGCCGCTCCGCGATGGCTAGTCCAGG 761842 29 100.0 32 NNNNNNNNNN ............................. GCGCCGGGCGTGCGATCGATCTCGTCAAATAT 761903 29 100.0 32 NNNNNNNNNN ............................. CTCCCCAAACCACCGCCAGAAGTTCCTCACCC 761964 29 100.0 32 NNNNNNNNNN ............................. GCCAACAATCCAGCCACCATCACTAGCGCTCG 762025 29 100.0 32 NNNNNNNNNN ............................. TTCCCAGGTTTGGCGTGTTTTTCCCTGGCTTT 762086 29 100.0 32 NNNNNNNNNN ............................. GGGGCGGGCGTCTGTAGATTGGGCCGCGTCAG 762147 29 100.0 33 NNNNNNNNNN ............................. GTTTACCGACAAGCCCCCGGACATGCGAATCAA 762209 29 100.0 32 NNNNNNNNNN ............................. GCGTGTTTTTCCCCGGCTCTCTTCGGCGTGCA 762270 29 100.0 32 NNNNNNNNNN ............................. GGAGTTCTGCCAATAATTGTGGTGGAACCTGT 762331 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 92 29 32 CGGTTCATCCCCGCGAGCGCGGGGAACGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [4,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [107,104] Score: 0/0.18 # # Final direction: R [0.37,0.68 Confidence: LOW] >NC_013852 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 19223 36 100.0 32 TCCACAAGGA .................................... GCCTCGGTGCCCGCTGTTGAAATAGCGATGGT 19291 36 100.0 33 TAGCGATGGT .................................... GCCGTGTTCAGGTCCGACACGCCAGCGGTGGCC 19360 36 100.0 33 AGCGGTGGCC .................................... GGTCTGCGGGGCCTGGCACGTCCCGGCCCTGGC 19429 36 100.0 34 CGGCCCTGGC .................................... TCGTTCCCGGCGTCGACCTGGGTCTTGGTGCCCA 19499 36 100.0 32 TTGGTGCCCA .................................... ATAGTTAGGTTACGTACATCGGTATTAATTAG 19567 36 100.0 33 TATTAATTAG .................................... TAGTAGTGGCGACGATTGAGGCGGATTTTCATT 19636 36 100.0 32 GATTTTCATT .................................... AGATATTTTTTATTGGAATCACATTCTTGCAA 19704 36 100.0 32 ATTCTTGCAA .................................... CTACCACTTTCCCATGTACCATTTTCCCATCG 19772 36 100.0 32 TTTCCCATCG .................................... CTTCCTCTTCGTTATCGCTGGGTTGGTATACG 19840 36 100.0 34 TTGGTATACG .................................... GTTGCAGTAAGCTAGGCAGAACTCTGGGTTCAGC 19910 36 97.2 TGGGTTCAGC ...................................G AAGAAGGCA ========== ====== ====== ====== ========== ==================================== 11 36 32 GTCCGCATTGAGACCCGCTTTCGAGGGGATTAAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [8,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.90,-4.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [265,79] Score: 0.18/0.18 # # Final direction: F [0.96,0 Confidence: HIGH] >NC_013852 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 8015 36 100.0 33 CCACAGGTGG .................................... TTTGAGTTCGATGCTGCTTAAACTGATCGAAAA 8084 36 100.0 33 TGATCGAAAA .................................... TCCATTATAAATATCAGCTCCACAAATAGGGCA 8153 36 100.0 34 AAATAGGGCA .................................... CCTCCTCGGAGGCATCCATAGCCTCTTTTGCAGA 8223 36 100.0 33 CTTTTGCAGA .................................... GGAAACAACGATGTCTTCCAGGTCATTGCCGTT 8292 36 100.0 33 CATTGCCGTT .................................... ATATGGTGTGCTCCTTCGCCCAAGATCTTGAGG 8361 36 100.0 32 GATCTTGAGG .................................... ATGAGCGCGAGTGAACATATCCATCACACCCC 8429 36 100.0 31 ATCACACCCC .................................... CGTGTCCTCTGCCCATTTCTTGAACTCCCGG 8496 36 100.0 34 GAACTCCCGG .................................... CCTTGTTACATCCCGTCCAAGCGTCTTCGTAAAA 8566 36 100.0 CTTCGTAAAA .................................... CGGGATTGAGCGCTTAATAACGGCCATGACTGG ========== ====== ====== ====== ========== ==================================== 9 36 32 GTTCGGCACTGAGACCCGAATTGAGGGGATTAAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [10,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.40,-3.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [51.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [161,1597] Score: 0.18/0.18 # # Final direction: F [1.01,0.18 Confidence: HIGH] >NC_013854 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1017154 36 100.0 30 CGACTGGAAC .................................... GCACTGGCGAAAGTGCCGCCGACCGCAACG 1017220 36 100.0 30 GACCGCAACG .................................... TCCACATGTTCGATGTCGAGCGCGCCGATC 1017286 36 100.0 30 CGCGCCGATC .................................... GAACGCCGGGCCGATGAGATGCACGAGGGC 1017352 36 100.0 30 GCACGAGGGC .................................... CCCCGAACACCGCTACTGAGGGCCAGAAGG 1017418 36 100.0 30 GGCCAGAAGG .................................... TCTGCTCGGATGCCAATAGCCGTGTCGAAT 1017484 36 100.0 31 CGTGTCGAAT .................................... CAACCTGTGAGGACCAAGCCATGAACATGAT 1017551 36 100.0 30 TGAACATGAT .................................... GTCAGCGCGCCGCTCGCGCCGCCCAGCGTC 1017617 36 100.0 30 GCCCAGCGTC .................................... TCAGCCCCGAGTATCTGCAACTGCTGGGCA 1017683 36 100.0 30 CTGCTGGGCA .................................... AACCCTGCGCCTTGTGACAGGTGATCGCAT 1017749 36 100.0 30 GTGATCGCAT .................................... TCCTGCCCGCCAAAGACGCAGATCGGCGCT 1017815 36 100.0 30 GATCGGCGCT .................................... CCGGTTCCGTGGTGTCCGCCAGGAAGGACT 1017881 36 100.0 30 AGGAAGGACT .................................... GCATCGGCGATGGACAAGGCCAGCGAGAAG 1017947 36 100.0 30 CAGCGAGAAG .................................... CAACCGCATTGCGACCGCGCTGAACGCCGC 1018013 36 100.0 30 TGAACGCCGC .................................... CCGCGGCTGCGATGGCACTGGTGCCCACCG 1018079 36 100.0 30 GTGCCCACCG .................................... AGCCTTCGCATTCGCGGCATGGGACTTGTC 1018145 36 100.0 GGGACTTGTC .................................... GGATGTCCGG ========== ====== ====== ====== ========== ==================================== 16 36 30 GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [35.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [650,76] Score: 0.18/0.18 # # Final direction: R [0.18,1.01 Confidence: HIGH] >NC_013854 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================================== ====== 1016890 38 100.0 28 ACGCTGCCAG ...................................... TCCTTAAGCGCCGCGCCGTACTCTCTGA 1016956 38 100.0 28 TACTCTCTGA ...................................... GCGTTGACCGGGTGATAGGTTTCCCGCA 1017022 38 94.7 GTTTCCCGCA ....................................GT CGAGGATG ========== ====== ====== ====== ========== ====================================== 3 38 28 GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACTTG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [31.7-33.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [386,1197] Score: 0.18/0.18 # # Final direction: R [0.41,0.92 Confidence: MEDIUM] >NC_013854 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================================== ====== 1178058 38 100.0 44 GCAGGAGGTA ...................................... TAAAACTTGTAAGCCAACCCGGACGGATCGCATGAAGCAGTTTC 1178140 38 97.4 36 AAGCAGTTTC G..................................... ACGATGACTGGAGCGAACGCGGCCCCTTCTCTAGAA 1178214 38 100.0 31 TTCTCTAGAA ...................................... TCTGGCATTGAAAAACAAAATTACCACAATG 1178283 38 100.0 33 TACCACAATG ...................................... TTTCTTCCAGGTCTTCCAGGTCGGTGATCGGGG 1178354 38 100.0 32 GTGATCGGGG ...................................... TTTCTGAAATATTTTTGTTGGTGGCTTAGTAG 1178424 38 100.0 35 GGCTTAGTAG ...................................... AAACCGATCCATACAATGAATGAGAATATGGCGGC 1178497 38 97.4 ATATGGCGGC ..................................A... CGGCCCTGGAA ========== ====== ====== ====== ========== ====================================== 7 38 35 AGTTCGGAGGCGTTCCGCTATGGGAAGCGGATTGGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [8,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.70,-9.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [165,92] Score: 0/0.18 # # Final direction: F [0.41,0.37 Confidence: LOW] >NC_013854 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3035919 37 100.0 37 TAGGGTCCCA ..................................... GCCTCAACGGAGTAGCGTACCCGTCCGTTGAGAGCAG 3035993 37 100.0 36 TTGAGAGCAG ..................................... CGTGCATACACAGCAGGATGAGGTTCCGTGGGCGTT 3036066 37 100.0 39 CGTGGGCGTT ..................................... CCGGGCCGATGACCAGACGATCACGACATCAAGACCGAA 3036142 37 100.0 37 CAAGACCGAA ..................................... CCAGCCCTGCCGCCACAGCCGGCCAGATACGGGGCCA 3036216 37 100.0 40 TACGGGGCCA ..................................... GTGGTCAGTTAGTGGCCAGCACCCAGCCTCGAATATTCCA 3036293 37 100.0 36 GAATATTCCA ..................................... GCGAAAATGTCGACGAAGGAGATCGCCGACTTCACC 3036366 37 100.0 36 CGACTTCACC ..................................... AGACCTCGTAGACGATGGCACGGCGGATGTCATTTT 3036439 37 100.0 37 ATGTCATTTT ..................................... CCTATACCGTGTTTCGCAGCGACGACTGGTCGGAGAC 3036513 37 100.0 37 GGTCGGAGAC ..................................... CAGACACCGTAATAGGTCCGCGCCTCAACCGCCTTGC 3036587 37 100.0 37 ACCGCCTTGC ..................................... GTGGGTGGAGGCAGGTGGGCTGTCCCTTGCCAACCTA 3036661 37 100.0 37 TGCCAACCTA ..................................... TCAAGAAGCGCAAGAAATACTACATCTCCTACACCGA 3036735 37 100.0 37 CCTACACCGA ..................................... GCACACCGGAGTTACGCCAATGACCACCACCGACATC 3036809 37 100.0 37 CACCGACATC ..................................... GACGGAACAGCATGAGGCAGCCACCGGCCGCTTACTG 3036883 37 100.0 40 CCGCTTACTG ..................................... ACAGCTTCGGGTCGGTGGGCAGGTCGTCACGCAGCAAGTT 3036960 37 100.0 38 GCAGCAAGTT ..................................... GCGCGCTGCGCGTCGTCATAGTCGCGTATGGCCACGCT 3037035 37 100.0 37 TGGCCACGCT ..................................... CAGCACCTTGTCCAGAGGGTACGCCTCGCTTGTCGGA 3037109 37 100.0 37 GCTTGTCGGA ..................................... CCGATGGGCGGCATCTCTATTACAACCGCGAATTCAT 3037183 37 100.0 37 GCGAATTCAT ..................................... CAGCGGCTGTTCGACGTGATGTCGTGGGGTCATGTGT 3037257 37 100.0 37 GGTCATGTGT ..................................... GGTCGAAGGTCAAGAGCGGGTACGCCGTGGCCAAGAT 3037331 37 100.0 39 TGGCCAAGAT ..................................... TCGCGGATTTGAGAAAACAAGGGAGCCTGTTTTGAACGC 3037407 37 100.0 36 TTTTGAACGC ..................................... GATACGCTCGTAGGCAATCAGTTCACAGGTTGGGCG 3037480 37 100.0 39 AGGTTGGGCG ..................................... GCGCGCGTGCTCGCCGCCTTGTGGATGCGGCAGACCCAC 3037556 37 100.0 37 GCAGACCCAC ..................................... GCAGCGGTGCCGCCGGCCTGATGCAGGTGATGCCGGC 3037630 37 100.0 35 TGATGCCGGC ..................................... CCAGTGCCGGGAAGTCGTGGGTCTGTAGCAATGGA 3037702 37 100.0 37 TAGCAATGGA ..................................... AAGCGGATGGAGGTCGGTTTGGAAACCAAGTGCAGCG 3037776 37 100.0 41 AAGTGCAGCG ..................................... TCTCGGGACGATCGCGTGATCCCAAGTTGGGAACAGTTCTG 3037854 37 100.0 37 AACAGTTCTG ..................................... GCAGCCGGCGGAGAGCGCTGACCGACGGATTCGGGAC 3037928 37 100.0 39 GATTCGGGAC ..................................... GGGCACTCGCCGACGCATCATCTGCTCGGCATTCTTCAC 3038004 37 100.0 36 CATTCTTCAC ..................................... CCTGCTGTTCGCGTTGCAGGCCGGCAACCGTTTCGT 3038077 37 100.0 36 ACCGTTTCGT ..................................... GGAGAGACCGGCGTGGGTTTCCTTCCCGCCAGCAAC 3038150 37 100.0 41 CGCCAGCAAC ..................................... TAAGAATAACAAAACCTGATGTCTTCGCGGCGGGACAATAG 3038228 37 100.0 36 GGGACAATAG ..................................... CAGCAGCTTGCTGTTTTCATCCGCAAGCATTTCGTA 3038301 37 100.0 39 GCATTTCGTA ..................................... GTTTCCTCCCTCGGGGCGGCGGACGTTTTCCCCCTGGTG 3038377 37 100.0 CCCCCTGGTG ..................................... GGCTCCCCCC ========== ====== ====== ====== ========== ===================================== 34 37 37 GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [9,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-9.10,-13.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [33.3-33.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [147,264] Score: 0/0.18 # # Final direction: NA [0.37,0.37 Confidence: NA] >NC_013854 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3158606 37 100.0 37 NNNNNNNNNN ..................................... TACATCTGCGACATCGTTCGCCTTCGCGGTGGCCCGT 3158680 37 100.0 37 NNNNNNNNNN ..................................... ACGTACTTCCCGCCCATGGAGAAGCCCGTGTAGACGC 3158754 37 100.0 39 NNNNNNNNNN ..................................... GGCGCAACGATCAAGTTTCGTACGTCCCGGACGGCAGGC 3158830 37 100.0 34 NNNNNNNNNN ..................................... TTGCATATGCGGCATACCAGTACCCGGATTACAA 3158901 37 100.0 38 NNNNNNNNNN ..................................... TCAGCGTCCTTAGGATCGTCCGTGAGAAGGTCGGCCAT 3158976 37 100.0 36 NNNNNNNNNN ..................................... TGCAGGATGGACCCAACTTCGAACTGGAAGAGGCCG 3159049 37 100.0 37 NNNNNNNNNN ..................................... GCGTCTGCCAAGTCCATGCGGGCGAAAGAGACGCGAT 3159123 37 100.0 36 NNNNNNNNNN ..................................... GTTCGGAATATTGATCCGACCCCATTCCGGATCATT 3159196 37 100.0 37 NNNNNNNNNN ..................................... AGGCCCGCCGCGTGCTGGGCGCCTCCAATGTCGGACC 3159270 37 100.0 36 NNNNNNNNNN ..................................... GGCGTCTGCCGTCTCCAGCCACTTCGCCAGCACTCC 3159343 37 100.0 38 NNNNNNNNNN ..................................... GGGTGAAGCCGGCGTTGTCGTAGGCGATGGCGTCGTAG 3159418 37 100.0 37 NNNNNNNNNN ..................................... CCCGCGGCACCGGATCGAGGGGCCGCGGCGCAACGGC 3159492 37 100.0 36 NNNNNNNNNN ..................................... ATCACAATGAACGGCGAACCACCTCGCCCACCCTTG 3159565 37 100.0 39 NNNNNNNNNN ..................................... AGGGCGCGGGGAGGGGGAGCGCCCCCATTTCCTTCAGCC 3159641 37 100.0 42 NNNNNNNNNN ..................................... GCCATGTCGCCGTCGTGCTGTGGTGTCATCGTGTTGCCACTT 3159720 37 100.0 37 NNNNNNNNNN ..................................... GGCGGAAGCGGTGTGTCTGGTGGTAGGCTGACGGAGT 3159794 37 100.0 40 NNNNNNNNNN ..................................... TCAGTCGGTGCGGATACCGCCTTGGCGATCACAGAGACGG 3159871 37 100.0 37 NNNNNNNNNN ..................................... CCGTGCGGTTGCAACCGGAAGCCAACCCCCATACCCA 3159945 37 100.0 37 NNNNNNNNNN ..................................... ATGCCCGGAGGCACCCATGCCCGAAATCCCATCCCCC 3160019 37 100.0 35 NNNNNNNNNN ..................................... CCTTGCTAGCGGGGATCTTGATCGCATGGGGCGCC 3160091 37 100.0 37 NNNNNNNNNN ..................................... GCGCGAACGCGGGCCTGGGCGAGGTCGTGGACGATGG 3160165 37 100.0 37 NNNNNNNNNN ..................................... CGTCGAATGTCTTTGGAATGCGTAGCCATGTTGAAAG 3160239 37 100.0 38 NNNNNNNNNN ..................................... TTTGATGGCCACAGCTGCACGTCTTCGCGCCGCAGGAT 3160314 37 100.0 41 NNNNNNNNNN ..................................... GCGATATTGGTTCTCGCCCTGCGCGCGGTCGATCACCTCGG 3160392 37 100.0 36 NNNNNNNNNN ..................................... TGCGCGGGGTTGAACGATGGACAAGAGGTTGACGGA 3160465 37 100.0 37 NNNNNNNNNN ..................................... GCCGGGCCGCACGGTCACCGTCTCCGTCAGCTCCACC 3160539 37 100.0 37 NNNNNNNNNN ..................................... ATGCATATCCCAGGATGCAACTACACACTTAGAACCG 3160613 37 100.0 36 NNNNNNNNNN ..................................... AAGCGCCGCCTGCTGGCAATCGCCCCTGGTGCCGTC 3160686 37 100.0 38 NNNNNNNNNN ..................................... GTGGAAGGCTGACCCGACGGCGCCGCGCCACGGTGCGG 3160761 37 100.0 37 NNNNNNNNNN ..................................... GCGCTCGAAATACACGGTCCAGCCGGAATCTCCGCAG 3160835 37 100.0 36 NNNNNNNNNN ..................................... CTGGGGTTCGGCGGCGGGCGGTGGACTTCGGACATG 3160908 37 100.0 38 NNNNNNNNNN ..................................... GTCGGCACCTTCGAAGACGCGATGCAGTTTCTCGAAGA 3160983 37 100.0 38 NNNNNNNNNN ..................................... CGCGGCCTCGGGAGGCATGGCCTCGTGCCACTGGCCGT 3161058 37 100.0 36 NNNNNNNNNN ..................................... CGCCGGCCGTGAGGCCGTCGCCGGGCTGAGCGCCCC 3161131 37 100.0 37 NNNNNNNNNN ..................................... CGGCGTGATCTTGCCCGGGTTGCGGCGGGAGAGGCGG 3161205 37 100.0 36 NNNNNNNNNN ..................................... GTCGAAAGAGTGTGATCAAGCTGCTGCTGTGCATCG 3161278 37 100.0 40 NNNNNNNNNN ..................................... CCGACGCGACATAGACGGTGTTGGTCTTGTGCCAGCGGCC 3161355 37 100.0 35 NNNNNNNNNN ..................................... TGGGGCTGATCGTCGCCTTCCTGCCGCCGAAGGCC 3161427 37 100.0 39 NNNNNNNNNN ..................................... CGGAGGGAAACCACCAGCCGAGCAACGTCGCTCGGCTTG 3161503 37 100.0 39 NNNNNNNNNN ..................................... GACGCATGAAGTTCGTACCGGTGGCGTCCCGCGCATATC 3161579 37 100.0 39 NNNNNNNNNN ..................................... CCTGCCGACCCTGATCTGCAGCTTGTCGATGTCGAGCCG 3161655 37 100.0 39 NNNNNNNNNN ..................................... CGCCGCTCTATGAGTTCGTCGCCACGCGGTCCATCACGC 3161731 37 100.0 39 NNNNNNNNNN ..................................... TGGCCCATCGTCTATGACAGGAACGCCCTGCCCTTCGAG 3161807 37 100.0 41 NNNNNNNNNN ..................................... AGATAGACGCTCTGGCGGGGCGTGCCGCCGATGTAGACTCG 3161885 37 100.0 35 NNNNNNNNNN ..................................... GCCATTCCCCTTGTCGCTCTGGTCAAATTGGGCAA 3161957 37 100.0 40 NNNNNNNNNN ..................................... TGCCATACAGGCCAGGACTTCACGACCTTTCTGGGAAATC 3162034 37 100.0 39 NNNNNNNNNN ..................................... GACTCCCAACGGACGCTGACGAAATGGGGCGCACGCCGC 3162110 37 100.0 36 NNNNNNNNNN ..................................... TTGAACACTGCGGCGGAACACCCCATCGTGGTAACG 3162183 37 100.0 38 NNNNNNNNNN ..................................... AATGATATGGCTCTCTCGGGCTTCGTCATTGTAGACCC 3162258 37 100.0 39 NNNNNNNNNN ..................................... AGCAAGAACTATGTGGATCGAAACATCCTCAATCTTGAA 3162334 37 100.0 37 NNNNNNNNNN ..................................... AACTTCACGATCTCAATGGCTGTTTTGTCATCAATAA 3162408 37 100.0 37 NNNNNNNNNN ..................................... AGCAGTCCAGCGGATGCGGCGGTGGTTGGACAACCGC 3162482 37 100.0 38 NNNNNNNNNN ..................................... AGCCCCAGGTAGCCCAGCTTGTAGGTCTGGCTGGCTTC 3162557 37 100.0 36 NNNNNNNNNN ..................................... GCGTCCGACAGGTTGGCGCCCGACAGGTGGGCGCGC 3162630 37 100.0 36 NNNNNNNNNN ..................................... CCGGGTCAGGGTAGGCCATGAGACGGCCATCCGGCA 3162703 37 100.0 35 NNNNNNNNNN ..................................... GACACAGACAGCAACAAGGCCACCTCATCGGGTGG 3162775 37 100.0 36 NNNNNNNNNN ..................................... GGTTTTGGCTGAGTTTCGCACCGCTGCGGGATAATC 3162848 37 100.0 36 NNNNNNNNNN ..................................... TCTACCGGCAGCAATGCCGGCAGATCCTGATCGGGG 3162921 37 100.0 36 NNNNNNNNNN ..................................... TGAATGCTGGGGCATCATGTCCGGCCGTCATCCCGA 3162994 37 100.0 39 NNNNNNNNNN ..................................... CCGTGGAAAGTGACCGATCTGCGTTTGCTATGAACTGAG 3163070 37 100.0 36 NNNNNNNNNN ..................................... CGTCAACCCAATCAGCCAGACCCCTGGGTGCGGGCT 3163143 37 100.0 38 NNNNNNNNNN ..................................... TGAATGCGCATTTGTTTCTCCATTTCTTCAGGCGGCCC 3163218 37 100.0 37 NNNNNNNNNN ..................................... TTGCTTTCCGCCGCCTGCGCCGTCATCCTTTGGGGCG 3163292 37 100.0 38 NNNNNNNNNN ..................................... AAATGGAGCGTCAGGCGCTCCCAGGGGGAGCGGTCGGA 3163367 37 100.0 35 NNNNNNNNNN .T................................... CACAAGGCGATAGCGGCGCCCCAGCTCGGCCCGCG 3163439 37 100.0 37 NNNNNNNNNN .T................................... TTGCTTTCCGCCGCCTGCGCCGTCATCCTTTGGGGCG 3163513 37 100.0 38 NNNNNNNNNN ..................................... AAATGGAGCGTCAGGCGCTCCCAGGGGGAGCGGTCGGA 3163588 37 100.0 35 NNNNNNNNNN .T................................... CACAAGGCGATAGCGGCGCCCCAGCTCGGCCCGCG 3163660 37 100.0 40 NNNNNNNNNN .T................................... AAGGCAGTAGAGGCGCCGGCGGTCGGCTCCGCCGGAACAG 3163737 37 100.0 39 NNNNNNNNNN ..................................... ACCTCCACCCAGGTGTACTGCGGCAAAGTCCTCGCCACC 3163813 37 100.0 36 NNNNNNNNNN ..................................... TCGAAGGTGGCCAGCGACAGCCCGGTGCGCTCCACC 3163886 37 100.0 1 NNNNNNNNNN .....................GTAAG.GTCG.CTGAG NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 72 37 37 CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [7,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-17.90,-16.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [60.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [232,81] Score: 0.18/0.18 # # Final direction: F [1.6,0 Confidence: HIGH] >NC_013887 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1021672 30 96.7 37 TGATTGCCCT ........C..................... TCTTATGCAAATGAGGACAAAACAAATCCTTACCAAC 1021739 30 100.0 36 CCTTACCAAC .............................. TAGTGATAAGGTAGGAAAATTGAGATTAAAAAAAAA 1021805 30 100.0 45 TAAAAAAAAA .............................. TAATCGGAAACACCAAAACCTCCGGAGGGGTAACTCTACATGATG 1021880 30 100.0 36 CTACATGATG .............................. TAGTGATAAGGTAGGAAAATTGAGATTAAAAAAAAA 1021946 30 100.0 45 TAAAAAAAAA .............................. TAATCGGAAACACCAAAACCTCCGGAGGGGTAACTCTACATGATG 1022021 30 100.0 36 CTACATGATG .............................. TAGTGATAAGGTAGGAAAATTGAGATTAAAAAAAAA 1022087 30 100.0 45 TAAAAAAAAA .............................. TAATCGGAAACACCAAAACCTCCGGAGGGGTAACTCTACATGATG 1022162 30 100.0 44 CTACATGATG .............................. TTCTTTCTAATTCAATTAGCTCTGTCAAATCTTTTTTTAAAATA 1022236 30 100.0 40 TTTTAAAATA .............................. TGGTTTTAGGAACCGACAAAGAACTAAAAGAATTAGAAGA 1022306 30 100.0 35 AATTAGAAGA .............................. ACTTTATCTAACGTGCTTAATGGCCCTTCTTCAGC 1022371 30 100.0 37 CTTCTTCAGC .............................. GACATCTTAGAATTAGATGCAATGTTGAGTTATAATG 1022438 30 100.0 37 AGTTATAATG .............................. AACATTCTACCAGTTGTTGTGTATTTTTTAACTCTCA 1022505 30 100.0 37 TTAACTCTCA .............................. TCTATTTCTTCTATTATCTTTATTATTTCCTTCTCCA 1022572 30 96.7 40 TCCTTCTCCA ........C..................... AAGCCCACAGCAACAAATAGATTGACAAACTTATCATGGT 1022642 30 96.7 TTATCATGGT ........C..................... TTCTCTATTT ========== ====== ====== ====== ========== ============================== 15 30 39 GTTAAAATAAGACCGATTCGGTATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.80,-2.80] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [370,98] Score: 0.18/0.18 # # Final direction: F [0.45,0.41 Confidence: LOW] >NC_013854 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3199247 37 100.0 46 TCCGACCACC ..................................... GCCCAAGCCGCTCCCGTTGGCGAAGCACAGACCAGCGGTTGGCCTC 3199330 37 100.0 39 GGTTGGCCTC ..................................... CTTCGATGTCGCTGGCCGTGGCGGCTTCTGGAATGAGGC 3199406 37 97.3 38 GGAATGAGGC ...............A..................... AAGGACAGGGCGAAGGTGGCCACCGCCCCCAGGTGGTT 3199481 37 100.0 40 CCAGGTGGTT ..................................... ACGTATATGGCGCTTGGTTGTCAGGATATGTCACGTCATT 3199558 37 100.0 36 TCACGTCATT ..................................... CGACGGGCGACGCGACGGTCAGTGCGTGTCCTCGGC 3199631 37 100.0 38 TGTCCTCGGC ..................................... CCGGTTGGCAGCCTGCGCCACGCAAGCGCCCGCAGGTT 3199706 37 100.0 38 CCCGCAGGTT ..................................... CCATGCTGTGCGGCTGCCACCGCTAAAAATATTAAACG 3199781 37 100.0 39 ATATTAAACG ..................................... CGCGCCCGGCCCGGAACATCCCTATGCCACGGGCGAGCC 3199857 37 100.0 40 CGGGCGAGCC ..................................... CTCTCCGACACCAGCGGTGGTGCCGCCGCCCGTAGTTCCC 3199934 37 100.0 39 CGTAGTTCCC ..................................... CGGGCTTCGTCCGACGCTGCGGCGGCCGAAGGATGCGTG 3200010 37 100.0 38 AGGATGCGTG ..................................... TTGCCGCAGAGCGTCAGACCACGGCGGAACTGTCGGCT 3200085 37 100.0 34 ACTGTCGGCT ..................................... GGTGAGGCGACGATGGTCTGATGGTAGCCGCTGC 3200156 37 100.0 41 TAGCCGCTGC ..................................... GGCGATGAGGCGCTGGTCATCCAGCAGCAGGAGATCACGCA 3200234 37 100.0 35 AGATCACGCA ..................................... GAAGCAGTGACCGACACCCCAGAGATCACCGCAGC 3200306 37 100.0 36 TCACCGCAGC ..................................... CACCGCGGCGATCACCGCGCCATCGGCCGGGGTCTT 3200379 37 100.0 39 CCGGGGTCTT ..................................... AGGCCGCAGGCGCGCAGGAAGCGGCCGAGGTCGGCCGGC 3200455 37 100.0 41 GTCGGCCGGC ..................................... GCCGATCTGCCGCTGGCGCTGATCGACGGCCCCTTCGTGGT 3200533 37 100.0 37 CCTTCGTGGT ..................................... ATTCTTGCGAGTCCGCATCCACGATCCGCCGCGTCCT 3200607 37 100.0 37 GCCGCGTCCT ..................................... CCGTCTCCACCCGTACCGTTTGGACTGCATCCATGAC 3200681 37 100.0 39 CATCCATGAC ..................................... AGTGCTGGGCGCGAAGATGGCCCAGTATTACGGCGTCAT 3200757 37 100.0 ACGGCGTCAT ..................................... CCCGGCTGTCGGGCCGGGGTCTCGGTGTTCAATGGAG ========== ====== ====== ====== ========== ===================================== 21 37 38 GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-16.70,-17.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [35.0-33.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [71,120] Score: 0/0.18 # # Final direction: R [0,1.15 Confidence: HIGH] >NC_013887 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1151093 30 100.0 37 ATCCAATCAA .............................. GACAGTTACAAAAACTGTGAGTATATGAAGAGATTAC 1151160 30 96.7 34 AAGAGATTAC .....................G........ ATTACTATTACTCAGCATCTCAAAAATTATTCTA 1151224 30 96.7 36 AATTATTCTA .....................G........ ATGATTCTCTCCAGCAGATTTATTTATTAGAAGATG 1151290 30 93.3 37 TTAGAAGATG ................T....G........ AGTTGGAAAAGTATCATAGAGGAATATTACAAAACAA 1151357 30 96.7 36 TACAAAACAA .....................G........ GCCAGTGTGTAATGACGGGCTTAAGAGGACACTATT 1151423 30 100.0 42 GGACACTATT .............................. GGGATGCATTATGGTCCTGTGATTCAGTGGCATATAGATATA 1151495 30 100.0 38 TATAGATATA .............................. GCTATTGAAATGTCTCTAATTCTGACTTTAGAGATAGC 1151563 30 100.0 41 TAGAGATAGC .............................. AGTAACCGTAATTTAAACCCAACATACATCTGATTGCAAAA 1151634 30 100.0 39 GATTGCAAAA .............................. CGGAACACACTTTAAAAAAGCTGTTGCATTAAAAGCCAG 1151703 30 100.0 40 TAAAAGCCAG .............................. TTGATGCAGTAAAAGTAAGCGTTGATGGAAAAGTATTGAC 1151773 30 100.0 38 AAGTATTGAC .............................. GTAGATAGATGCTTATAAATGTAATATAAATACATAAA 1151841 30 100.0 36 AATACATAAA .............................. TCCTCCTTATTATTTTTTGCAAACTCTACCGTGTCT 1151907 30 100.0 39 TACCGTGTCT .............................. CGCAAATATTATTGCCATTAATACTGGAACAGTAACTTC 1151976 30 100.0 CAGTAACTTC .............................. AGGGCAATCA ========== ====== ====== ====== ========== ============================== 14 30 37 GTTTCCATACCGAATCGGTCTTATTTTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.80,-2.80] Score: 0/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [542,525] Score: 0/0.18 # # Final direction: R [0,0.41 Confidence: MEDIUM] >NC_013887 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1194903 30 100.0 38 NNNNNNNNNN .............................. GACTTAAACTTATTGCAAGTAATATAATCTTTTAAAAT 1194971 30 100.0 33 NNNNNNNNNN .............................. CTGTTGGAGAAGGAACATCCTCAGGATTTAAAG 1195034 30 100.0 36 NNNNNNNNNN .............................. CTTTATTCTGGAGGGCTACTTGAAACAGTAGATAGT 1195100 30 100.0 37 NNNNNNNNNN .............................. ATATTAAACCGAAATAAGCACAGTCCATATGTATTTT 1195167 30 100.0 39 NNNNNNNNNN .............................. TTGACTTTGAATCTAACGATTGTTATCGGTACACGTATT 1195236 30 100.0 41 NNNNNNNNNN .............................. TCAGTAGATTTAAATGCGTTCTTCGACATTTCAGGAGCTAA 1195307 30 100.0 40 NNNNNNNNNN .............................. TTAATTTGGACTGTTATTGCAGTTGGCAAGGTTACATTAT 1195377 30 100.0 38 NNNNNNNNNN .............................. CTAAATAAACAGGTTCAGAAGATACGGGCGTATTGTTT 1195445 30 100.0 42 NNNNNNNNNN .............................. GTTGGAATCTAAAAAACTTATCAGAGTGTCCAAAACGTTTGG 1195517 30 100.0 46 NNNNNNNNNN .............................. CTGTGCTACATTTCTGTCAATCCAATATGCTGGTGGCAAACAGATG 1195593 30 100.0 38 NNNNNNNNNN .............................. AAATCAGCAAGGATTATTGCCCAATGGTTTGCCTGGAA 1195661 30 100.0 38 NNNNNNNNNN .............................. TCCAACACTGTATTCTCACTGTAAGATATGTCGACATC 1195729 30 100.0 41 NNNNNNNNNN .............................. ATTAATCAAGTTAATCTTGCTCTGATTCGTGAATTTATAGC 1195800 30 100.0 38 NNNNNNNNNN .............................. TTCGTTTCAGACCACATTATCCACGACCCTGACAGCTA 1195868 30 100.0 40 NNNNNNNNNN ........A..................... TTGGATGTTGCACAATTAAACTTTAACGCTTATTTGCAGT 1195938 30 100.0 39 NNNNNNNNNN ........A..................... ATTACAAAGATTGATAATATAATTCGCTCAAAAGTTCCA 1196007 30 100.0 38 NNNNNNNNNN ........A..................... GAGATGGAAATGTTAGAGAGGTTTTATGATAAGCCAGT 1196075 30 100.0 40 NNNNNNNNNN ........A..................... TTCTCTTCAACTATCCAACCGATTCTTCTCTGCCCATCCA 1196145 30 100.0 55 NNNNNNNNNN ..............TC..T.AGGAT.G..A CATTTCACAGTAATACCATCCAGACCACGTGCAGTCATCCCAGTATATGTATATG 1196230 30 100.0 1 NNNNNNNNNN ..............TC..A.AGG.TT.TT. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 20 30 39 GTTAAAATCAGACCGATTCGGTATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-3.70,-3.70] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-80.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [336,181] Score: 0/0.18 # # Final direction: F [0.41,0 Confidence: MEDIUM] >NC_013887 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1207513 29 100.0 44 NNNNNNNNNN .......A..................... AATCTACATTAACAGGTAATGACTGTCCTGTATCTGAACGCTCG 1207586 29 100.0 34 NNNNNNNNNN .......A..................... AATTGTTTAGCAACATTTAAAGCAGTTTCTAATG 1207649 29 100.0 38 NNNNNNNNNN .......A..................... TTGGTCAATGGCATTGATTGAGAATTCAATATCAACTG 1207716 29 100.0 34 NNNNNNNNNN ............................. ACTATTTTCATAGCTGTGAATAAAAAAGAGCGAG 1207779 29 100.0 40 NNNNNNNNNN ............................. ATCTACAAACTCTAAGTCTAATCCAAAAACTACGCAATAA 1207848 29 100.0 41 NNNNNNNNNN ............................. CAGGTTTTGGCAAAAATTACAAAGCATTCATCTTTAGACAA 1207918 29 100.0 40 NNNNNNNNNN ............................. TGATATTTTCTAAAATGTTTGAGTTTTACTCTATGATACA 1207987 29 100.0 40 NNNNNNNNNN ............................. CAGTACTTTGCAGAAGTGCAAAAACTGGCTGAAGCGATAA 1208056 29 100.0 40 NNNNNNNNNN ............................. GCCTTTTGTCTTTGTGGCTCGGGGAGGGCATTTCGCCCTA 1208125 29 100.0 41 NNNNNNNNNN ............................. GTGGTAGTTGCTATTTTAAATCTTAAGTATCTTAACGATAA 1208195 29 100.0 37 NNNNNNNNNN ............................. AAGCTTCTTACTCAAAAATATGCTCTTCAAGTATTAA 1208261 29 100.0 41 NNNNNNNNNN ............................. TGGCAATATTTACCAGTAGGGCAACTAAGAATGCGATTAGA 1208331 29 100.0 41 NNNNNNNNNN ............................. ATGTTTGAACGCTCGTTGGATATAGGTATATATTTGCTCCA 1208401 29 100.0 41 NNNNNNNNNN ............................. ATGTTTGAACGCTCGTTGGATATAGGTATATATTTGCTCCA 1208471 29 100.0 41 NNNNNNNNNN ............................. ATGTTTGAACGCTCGTTGGATATAGGTATATATTTGCTCCA 1208541 29 100.0 37 NNNNNNNNNN ............................. AAGCTTCTTACTCAAAAATATGCTCTTCAAGTATTAA 1208607 29 100.0 50 NNNNNNNNNN ............................. ACTTCCAAACTTCTTTCCTACCTTCAACCTTGACAGTAATCTCAAAATCA 1208686 29 100.0 38 NNNNNNNNNN ............................. TCAGCCACTGCCCCACCACCAAGATTAAACCACTTAAG 1208753 29 100.0 38 NNNNNNNNNN .......A..................... ATGACAACCTATAGGCCGACCGAAAGCTTTATATAGTG 1208820 29 100.0 44 NNNNNNNNNN .......A..................... GAACCTCCAGAAACTAACTCCCTGTGAACTAAATCACCAAGATG 1208893 29 100.0 47 NNNNNNNNNN .............TC..G.AGGAT.G..A CTGATTTTCTTCCTTCAGTGGGTGCCTACTTATCCACACTATTTTAG 1208969 29 100.0 67 NNNNNNNNNN .....................TATATT.A AAGAGATTATGTGGGGCTGAAAGCCCCACCTTAATCTATTCTGGGTATACCAATAGGGCAAAGCCCT 1209065 29 100.0 1 NNNNNNNNNN A.GG...T...............AA...T NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 23 29 41 TTAAAATCAGACCGATTCGGTATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.07%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-3.70,-3.70] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-24] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [70.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [512,115] Score: 0.18/0.18 # # Final direction: F [0.59,0.27 Confidence: MEDIUM] >NC_013887 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 149980 31 100.0 35 AGACGGTAAC ............................... ATGTATAATAGTAGTAATGATGCATTTAGATGCAT 150046 31 100.0 40 TTAGATGCAT ............................... AAATCATAAAGAATGTAAAAGCTGAAGTGAAAAAACTCAA 150117 31 100.0 37 AAAAACTCAA ............................... CTAAAGAAATTTTATACTTTGCTGTTTATGATGAAAA 150185 31 100.0 38 ATGATGAAAA ............................... ACATCTGTTATACCACTTACATACTTTAGAACATCTTT 150254 31 100.0 41 GAACATCTTT ............................... CTTAATGGAACAATATATGCAACATTTGTTCCAGCCATTTG 150326 31 100.0 40 CAGCCATTTG ............................... CAGATTTATCATTCGAAACACCAACAATCAAACAATTTTA 150397 31 100.0 35 AACAATTTTA ............................... AAGAACCCAAAAGGACGGACGCACCAATATTAAAG 150463 31 100.0 35 AATATTAAAG ............................... TTGCATGATAAGCTCTATTGGGTTTTGATTGTTGT 150529 31 100.0 38 TGATTGTTGT ............................... AGTAGGTATGATGAACCATCATTAAACACGTTGTGGAG 150598 31 100.0 36 CGTTGTGGAG ............................... ATGCTATAAAATTTCTGATTATCCCTATTCGTTGCT 150665 31 100.0 38 ATTCGTTGCT ............................... GTTAAGGTTGTCAGAAGTTGTTGAAGCGGTTGATGCAG 150734 31 100.0 GTTGATGCAG ............................... AGGGCAATCA ========== ====== ====== ====== ========== =============================== 12 31 37 GTTTCCATCCTCCAAGAGGTCTGATTTTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.06%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.60,-3.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [416,481] Score: 0/0.18 # # Final direction: R [0,0.37 Confidence: MEDIUM] >NC_013887 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1507562 30 100.0 36 NNNNNNNNNN .............................. CTTTTAATTTCTCCATCAACTCTTCTCCACATTCTT 1507628 30 100.0 42 NNNNNNNNNN .............................. TGTTATCCCTCAATCCCAATATCTGGACAAAGGAGTATATAA 1507700 30 100.0 38 NNNNNNNNNN .............................. GAGTTCATAGGACCATGAGGGGGGCAACTCCTTGGGCA 1507768 30 100.0 43 NNNNNNNNNN .............................. TGTATATCATAATTACAATTCCAATAATCACAGATGAAATTAG 1507841 30 100.0 46 NNNNNNNNNN .............................. TTTCACTCAATAAACTATCTATCTGTATTGCAATCTCCATATCATC 1507917 30 100.0 36 NNNNNNNNNN .............................. CTACTTCTTAACCTTGAGCTGAAGCTTCTATGTCTG 1507983 30 100.0 38 NNNNNNNNNN .............................. ACGATTGTGTGTAATGAACTAAATTGCAATTACAACAA 1508051 30 100.0 35 NNNNNNNNNN .............................. ACATACTCTAAGAGATTCTCTAAGTCATTGTGATA 1508116 30 100.0 35 NNNNNNNNNN .............................. ATTTTCACACAATATAAGCAGTTCTTTCATTTCTT 1508181 30 100.0 35 NNNNNNNNNN .............................. GTTTTTACATCGATACAAGTAAGGTCTGAATTATC 1508246 30 100.0 42 NNNNNNNNNN .............................. TAAATCTTGTCAGCTCCTTTTAACTTTACATTTAAATCAGTA 1508318 30 100.0 34 NNNNNNNNNN .............................. TCCACTTCTTTCTTAACAGTAATAGAAGGTTTAA 1508382 30 100.0 39 NNNNNNNNNN .............................. CTCCTTTGTCATTTATTACTCTAATTGTTCCTTTATGGT 1508451 30 100.0 41 NNNNNNNNNN .............................. AAAAAAACAGATTACATCGTTCAAGAAATCATCAAATCTTA 1508522 30 100.0 41 NNNNNNNNNN .............................. TATTATTATGATGATAAATACACAATAAACTTGGACAGCTC 1508593 30 100.0 38 NNNNNNNNNN .............................. TTTTGTTGAAACTCAACAACACTTAAATATTTTGGTCT 1508661 30 100.0 37 NNNNNNNNNN .............................. CTGCCAATGCCTATGCCTCAAATACCTATGCCACAGA 1508728 30 100.0 42 NNNNNNNNNN .............................. GTATCAATGACGACTCTCATTTCTCCTTCTTCTGCAGTTGCT 1508800 30 100.0 36 NNNNNNNNNN .............................. ATATTATTAGTTTTTGCCTTTGGTGGTTTAAAATTA 1508866 30 100.0 43 NNNNNNNNNN ........C.....TC..A.AGGAT.G..A CCTGGTAAATGCTTTTCTATAAACTTTATGATGTCTACAAATT 1508939 30 100.0 1 NNNNNNNNNN ........C.....TC..G.AGGAT.G..A NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 21 30 38 GTTAAAATAAGACCGATTCGGTATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.80,-2.80] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [446,35] Score: 0.18/0.18 # # Final direction: F [0.59,0 Confidence: HIGH] >NC_013887 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 1514423 31 100.0 40 TGATTGCCCT ............................... ATGTAGTGATAAAGAAAGTCCATGACAAAGACGTTATCAA 1514494 31 100.0 38 ACGTTATCAA ............................... TTTCTGACAAGTTAGCAAGTATCGGGAGTAAGTCCATG 1514563 31 100.0 45 TAAGTCCATG ............................... ACACACTACTAAACTTGTTTATATCTGTTGTAAGTGTTAAAAATA 1514639 31 96.8 38 GTTAAAAATA ..................G............ TTAGTTGTAATATAATATTTTTCAATGTTGCAATTGTA 1514708 31 96.8 TGCAATTGTA ..................G............ TAAAATAACAGATGATTTAACTAAAGTAGTAAATGAAA ========== ====== ====== ====== ========== =============================== 5 31 40 GTTAAAATCAGACCTCTTAGAGGATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.29%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.90,-3.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [482,374] Score: 0/0.18 # # Final direction: F [0.37,0 Confidence: MEDIUM] >NC_013887 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 1693281 31 100.0 42 TGATTGCCTT ............................... CACTGCCCCCGAAGGGTTTATATTAGCATAGGTATGGCTGTA 1693354 31 100.0 43 TATGGCTGTA ............................... TCAATTGCATCAAGGCATACAAATATGTCTAGTTTTTTCATAA 1693428 31 100.0 36 TTTTTCATAA ............................... TCTGCATCTTTTACTTGTATTGCAGTAATTTTTGAA 1693495 31 100.0 38 AATTTTTGAA ............................... ATATTAACTAAACAACTGTATAAACATGCACGAAGTTG 1693564 31 100.0 41 CACGAAGTTG ............................... TATTTTGGTTCAAACAATTCTGAGAGTCTGAGAATCACATT 1693636 31 100.0 41 GAATCACATT ............................... CAACAGTTGGTTTTGGCAAGGCATTTTTCATGTGTAATATT 1693708 31 100.0 38 GTGTAATATT ............................... ATTGGATGGATAGAGTGGGGAGGCAGAAGGATAATTGT 1693777 31 100.0 40 GGATAATTGT ............................... TCATCTGTATGTTGCATTTCTAAAATAGCAAAAGAGACTA 1693848 31 100.0 35 AAAGAGACTA ............................... AGCCCAGTTTGCTCCATACTTGAGTATGTTTCCAT 1693914 31 100.0 41 ATGTTTCCAT ............................... ATAAGTTTTCTCCTAAATTCAAAAAATAATTTTTTCTTTTT 1693986 31 100.0 41 TTTTCTTTTT ............................... ATGTGACGTTCATCAGGATTATTTCACATTACAGGCAACAA 1694058 31 100.0 41 CAGGCAACAA ............................... ACATAAAACCAAATCCACCACCACCAGCACTAAAACCTTTT 1694130 31 96.8 AAAACCTTTT ..............................T TATGTTATT ========== ====== ====== ====== ========== =============================== 13 31 39 GTTAAAATAAGACCTCTTGGAGGATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.29%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.90,-3.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [73.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [447,263] Score: 0/0.18 # # Final direction: F [1.05,0 Confidence: HIGH] >NC_013887 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 321361 30 100.0 32 TGACTGCCCT .............................. TATGTTAGAGATGCCATATAACAATATGACAC 321423 30 100.0 34 AATATGACAC .............................. CCGTATCTACATAATTAGCCCTTGGTATTGTTGA 321487 30 100.0 33 GTATTGTTGA .............................. GTTTTTTCTCTCAAGTGCTCAACAATCTCTCTA 321550 30 100.0 38 AATCTCTCTA .............................. AAACTTCCACCACATCCATTAATGAAATAAAACCCAAG 321618 30 100.0 37 AAAACCCAAG .............................. AATGTAAATGTTTATTTAGATGAGGATTATGTTGGAA 321685 30 100.0 35 TATGTTGGAA .............................. AGTAGTTCATAGCAAAAATGACACTACTGCGGAGA 321750 30 100.0 37 ACTGCGGAGA .............................. TTGGGGCAGGCGGGATAATAGGCGGTGTCGACGATAG 321817 30 100.0 40 TCGACGATAG .............................. AACATTGAGAGTAATAGTTCCAGCTAACGCCCAAACAATC 321887 30 100.0 42 CCAAACAATC .............................. AATTTCTATTTAATCTCTTTCCTGTATAACCATAATCAATTA 321959 30 100.0 38 TAATCAATTA .............................. TTATTGCCCCACAAACTGGACATTTAAACTCTTCTGCC 322027 30 96.7 42 CTCTTCTGCC ........C..................... AATTCAACGCCGACAACCCAGAACTTATACTTTAATTTTCTA 322099 30 93.3 38 TAATTTTCTA ........C....T................ AAAATTCTTCAAAATTATTAAATTTCTTTTTCTCCATA 322167 30 93.3 38 TTTCTCCATA ........C....T................ GTGGCTTCGGTGGCTACCAAATTGTCAGTATGAAGGAG 322235 30 93.3 36 TATGAAGGAG ........C......G.............. TTCAAATCTTTATCCATATCGAGAATAAATACTTCT 322301 30 96.7 AAATACTTCT ........C..................... ATGATACTGA ========== ====== ====== ====== ========== ============================== 15 30 37 GTTAAAATAAGACCGATTCGGTATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.80,-2.80] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [522,217] Score: 0.18/0.18 # # Final direction: F [0.86,0 Confidence: HIGH] >NC_013887 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 375752 30 100.0 41 TGATTGCCCT .............................. AAAATTCATTAAATTTTCAATATCATCAACGATTTCAACAC 375823 30 100.0 38 ATTTCAACAC .............................. ACTATAATCTTAAACGTATTTGTGAATTTTATAGTAAT 375891 30 100.0 37 TTATAGTAAT .............................. TAATACGGACCAAATTCTCCAAGAGATATAAAAACAT 375958 30 100.0 37 ATAAAAACAT .............................. AACTTTTTCATGTGCATAAAATGCTAAAATCTTAGCA 376025 30 100.0 38 AATCTTAGCA .............................. TGGAAATCCATCAAAAAGAATTTTTGTGGTTCTATCCA 376093 30 100.0 43 GTTCTATCCA .............................. CATTAAATACGCCAGCTAATATTACCAATTCATCCTTAGACAA 376166 30 100.0 35 CCTTAGACAA .............................. AACCAATTGCTGTCTAAAAATGATATTAATGTATC 376231 30 100.0 36 TTAATGTATC .............................. TTTCTTGTTGTATTCTCTCCCAAGCAATCCTCTTAA 376297 30 93.3 38 ATCCTCTTAA ........A.......T............. GTTTCGGGGTCTTTGAAGTTACATGTATGTGGTGTAGT 376365 30 93.3 40 GTGGTGTAGT ........A.......T............. TGGAACAAACCGTTTAAAACCTCTGCCTCTTCCTTTGTAT 376435 30 100.0 41 TCCTTTGTAT .............................. TATTAAGTCCATGACCTTCTAAATATATTATGTTATTTTTA 376506 30 100.0 46 GTTATTTTTA .............................. ATTTCAATATCATCCATGTTTAGAATCAACTTTTTCTGGAATTCAG 376582 30 93.3 TGGAATTCAG ........A.......T............. AATAATTCTCCCGTTTTTCGTTTATTGTAGCACTC ========== ====== ====== ====== ========== ============================== 13 30 39 GTTAAAATCAGACCGAATCGGTATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-3.70,-3.70] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [363,250] Score: 0/0.18 # # Final direction: F [0.68,0 Confidence: HIGH] >NC_013887 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 448510 30 100.0 37 TGATTGCCCT .............................. CGAGATTTTAAGCCATATACAAGAATGTTTAAATTAA 448577 30 100.0 32 TTTAAATTAA .............................. CAAAAGAATTATTCAAACTGATAGATTGCCAA 448639 30 100.0 41 AGATTGCCAA .............................. TGTCAAATAATTTAGCGTATGGATTTACTCCACAGCCAGAT 448710 30 100.0 38 ACAGCCAGAT .............................. GATGGAAAGAAGATAGGAGGATATCCTATACACAAAAA 448778 30 100.0 38 TACACAAAAA .............................. TTCTTTGTATGGGAGTGTGGTTGCTTCTAATAGTAGTT 448846 30 100.0 40 AATAGTAGTT .............................. GCCAATACCCACAATATTCCAAAAAATCCAATTATTGCTC 448916 30 100.0 37 ATTATTGCTC .............................. AAAGCTTCAGTAATGCTTTTATCAGTGATAGCGTCTT 448983 30 100.0 ATAGCGTCTT .............................. GATATTTATA ========== ====== ====== ====== ========== ============================== 8 30 37 GTTAAAATCAGACCGATTCGGTATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-3.70,-3.70] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [456,270] Score: 0/0.18 # # Final direction: NA [0,0 Confidence: NA] >NC_013887 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 475539 30 100.0 38 TGAGGAGGAG .............................. TTAAAGAACTTGACAAAATCAGAAGTCGTCATCTCATC 475607 30 100.0 38 TCATCTCATC .............................. AGCAGAAAATTAAAGAATTGGAAGAAAGAGAAGCTTTA 475675 30 100.0 37 AGAAGCTTTA .............................. TAGACAGTAAAGGAAATACAAAAATGTTTAAAAGCTT 475742 30 100.0 35 TTAAAAGCTT .............................. ATGCTAGATATTGACGTGCGATATGATAGATTTTT 475807 30 100.0 42 ATAGATTTTT .............................. GGAGGTTTTTCAACTGCAAATCTATATTGTTCTCCCCTGTAT 475879 30 100.0 42 TCCCCTGTAT .............................. AAAACTAACAACCTGCTCCTTATCCTTCACCAAATAATAAAA 475951 30 100.0 42 AATAATAAAA .............................. TAAGTCATTCGGAGAGTTACAGAAAGCTCTAAATATCCAATC 476023 30 100.0 42 ATATCCAATC .............................. GAGGGGGCAACAACATACATCTGGAAAACAACAGTAGATTCG 476095 30 100.0 40 AGTAGATTCG .............................. CTTATGAGCGTATGTTCGATTTTTCCAACTTTGCAACACT 476165 30 100.0 39 TTGCAACACT .............................. TAGGATTAGAAGCGTTGGGGCTATTATTGGGGGATTCTT 476234 30 100.0 42 GGGGATTCTT .............................. AAAACCCCAATTGATTTTTTATCAATGGGAATGGGGGACTTC 476306 30 100.0 GGGGGACTTC .............................. AGGGCAATCA ========== ====== ====== ====== ========== ============================== 12 30 39 GTTTCCATACCGAATCGGTCTGATTTTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-3.70,-3.70] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [618,441] Score: 0/0.18 # # Final direction: R [0,0.27 Confidence: MEDIUM] >NC_013887 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 554503 31 100.0 40 GAGGTGTGTC ............................... TAGTCATAAAGATTAGGAATTTTAAGTTGTGATGTAACAG 554574 31 100.0 38 GATGTAACAG ............................... ACGATTATTCAGATGAATTATTAAGCTTTTTAATCGAA 554643 31 100.0 37 TTTAATCGAA ............................... TAGAAACAAAACACTACGCAGTTGTTAGGCAGAAAAA 554711 31 100.0 37 GGCAGAAAAA ............................... ATTTGAGAGTTATAACAGATATATGTATGTTCATCGA 554779 31 100.0 37 TGTTCATCGA ............................... TTAAGTATTTTAGAGAATTTATAAGCCCATATAACGT 554847 31 100.0 39 CATATAACGT ............................... CACTTTCATAGCAGGGTCTACAACTTCAACGAATGTAAA 554917 31 100.0 CGAATGTAAA ............................... AGGGCAATCAT ========== ====== ====== ====== ========== =============================== 7 31 38 GTTTCCATCCTCCAAGAGGTCTGATTTTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.06%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.60,-3.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [105,517] Score: 0.18/0.18 # # Final direction: R [0,0.55 Confidence: HIGH] >NC_013887 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 578759 30 100.0 38 CCCTCAGTAT .............................. GCAACATCTGAAAAGGGATTTGAATTGTTATTAGACAA 578827 30 100.0 41 TATTAGACAA .............................. TGTATAGCGAGTTACGTAGTTCAAACAGCTTTGGAAGCTTT 578898 30 96.7 41 TGGAAGCTTT .....................G........ CCTCTTTTAGGATTACACGCACACAAATACCCACATGATAC 578969 30 93.3 33 CACATGATAC ..........T..........G........ CTTTATGTCTTCGTTTGGATATAATGCTAAAAA 579032 30 96.7 37 ATGCTAAAAA .....................G........ AAAAATTAGTTAATAAACATAAAGACGCAATGTTCGT 579099 30 96.7 46 CAATGTTCGT ...........A.................. TATAATTCTAACAGATTTACCAATATCTGACATCTGTATTTTTATC 579175 30 100.0 42 TATTTTTATC .............................. TCGGTTATCGAAAGATTGATATCTGTTAATGTTTTGACTGTT 579247 30 100.0 45 TTTGACTGTT .............................. GTTATTGAGAAGTTCATACAGACATTGGAGGACGGATCAAATCAA 579322 30 100.0 35 ATCAAATCAA .............................. GCTGAGTATGCATACAACGATATTGCAGAGAAGGC 579387 30 100.0 36 CAGAGAAGGC .............................. AGTTATTAGATTTTTTAATAACCTTTTTCGAGTTTT 579453 30 100.0 TTCGAGTTTT .............................. AGGGCAATCA ========== ====== ====== ====== ========== ============================== 11 30 39 GTTTCCATACCGAATCGGTCTTATTTTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.80,-2.80] Score: 0/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [251,472] Score: 0/0.18 # # Final direction: R [0,0.68 Confidence: HIGH] >NC_013887 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 60125 31 96.8 50 AAATACCAAG ..........-.................... TATTTAGTGTAATAAGAAGTGTTGGAGGAGGAGAATTAAGTAGAGAAGAA 60206 31 96.8 42 TAGAGAAGAA ........A...................... GTGTGGAGGATTTTTAATGCAGGCTGTTGATAGAGATACGTT 60279 31 100.0 37 GAGATACGTT ............................... AAGGATGGGAAGGAGGCGATATTTGTAAGTATGGCTA 60347 31 100.0 AGTATGGCTA ............................... AGGGCAATCA ========== ====== ====== ====== ========== =============================== 4 31 43 GTTTCCATCCTCCAAGAGGTCTGATTTTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.06%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.60,-3.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [398,453] Score: 0/0.18 # # Final direction: R [0,0.78 Confidence: HIGH] >NC_013887 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 758705 30 100.0 38 NNNNNNNNNN .............................. AAAGCTTATACAAATCGTTAAACTTCCTGATTTTCAAA 758773 30 100.0 43 NNNNNNNNNN .............................. ATATAAGTATTTTTGAAGATTTTCGACTAAAACATCATATTTC 758846 30 100.0 34 NNNNNNNNNN .............................. TTAGGACTCTCAGTAAAATCATCTAACAGTGTTC 758910 30 100.0 42 NNNNNNNNNN .............................. TAAGTCATCATATAAGTTATTTATGTTATTAATCTCGTTGTT 758982 30 100.0 40 NNNNNNNNNN .............................. CTTCCCAACTTTGAGTATAATGCACCAACGAACAATTACA 759052 30 100.0 38 NNNNNNNNNN .............................. AATAGGGCAATACCAAATCTAACAATAGCACCAGACCA 759120 30 100.0 37 NNNNNNNNNN .............................. TTGATTTCATGGGGAGGGATGTATGGTATATAGAGAA 759187 30 100.0 39 NNNNNNNNNN .............................. GAGTATTCTTATTTAAAATGGGAGAGAATATGGAGGTTT 759256 30 100.0 39 NNNNNNNNNN .............................. TTGAAAAACAACAAATAATAGAAGTAGAAGACAACAATG 759325 30 100.0 38 NNNNNNNNNN .............................. TAAATCAGATTAAGAATAGGATTTATACGGATTACTTA 759393 30 100.0 38 NNNNNNNNNN .............................. AAAATTAGTTTTTTGAATTTTTCAAAGTCTTCGGAAAA 759461 30 100.0 42 NNNNNNNNNN ............T................. TTATCAACTTGGTATGGTTCAACTTCGGCAAGGTCTTGTTCG 759533 30 100.0 42 NNNNNNNNNN .............................. TCATGTAATTATGCAATTCATAGTTTCTAATGTAAATAAGCC 759605 30 100.0 38 NNNNNNNNNN .............................. TCAACTATTGGAGACAGCAATTCTCCCATTGAAGCTAT 759673 30 100.0 43 NNNNNNNNNN .............................. ATCGGCAGGAGCACCTGCGTTAGCATATCCCTGAATTGCTTTG 759746 30 100.0 43 NNNNNNNNNN .............................. TTGGATTCATTCACATCCCCCCCACCATTATTATCATTATTAA 759819 30 100.0 38 NNNNNNNNNN .............................. CCGTATTCAAATCTTCCAGAATATTCTAAGTCAGTGTA 759887 30 100.0 34 NNNNNNNNNN .............................. ACTTTCAAGCTCCCATTTCCTTATTTTTTATATT 759951 30 100.0 1 NNNNNNNNNN ........A...TA.T.G......A..... NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 19 30 39 GTTAAAATCAGACCGATTCGGTATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-3.70,-3.70] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [76.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [444,440] Score: 0/0.18 # # Final direction: F [0.68,0 Confidence: HIGH] >NC_013887 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 926377 31 100.0 36 TGATTGCCCT ............................... AAATTTGATGCAATAAAAGGAAAAGAAGAACATATT 926444 31 100.0 35 AGAACATATT ............................... CACTTTTAAGAAAATAAGCATCTTTAGCTCTGCAA 926510 31 100.0 40 AGCTCTGCAA ............................... GCTGGTCAAGGACGATTCTTTTCTCTCTGTCGTCCATACC 926581 31 96.8 CGTCCATACC ........C...................... TTTTGTATTAT ========== ====== ====== ====== ========== =============================== 4 31 37 GTTAAAATAAGACCTCTTGGAGGATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.29%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.90,-3.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [373,522] Score: 0/0.18 # # Final direction: F [0.78,0 Confidence: HIGH] >NC_013888 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 1289 31 100.0 37 NNNNNNNNNN A..C...C..............T........ TTTATAGTTCCAGCATTACAAAAATGTTATCTAAAAG 1357 31 100.0 40 NNNNNNNNNN ............................... AACAAATATTTATATACAGCTACAGCTTTGTTTAGGGTAA 1428 31 100.0 38 NNNNNNNNNN ............................... ACGATTATAGTGAAGAGTTAGAGAGCTTTTTAATTGAA 1497 31 100.0 39 NNNNNNNNNN ............................... TGATAAGGAAATTAAAGAAGTTACAGACGATGTAGTTAG 1567 31 100.0 37 NNNNNNNNNN ............................... ACGCAGTAAATATATACCTTAGTAGATTAAAAGAATA 1635 31 100.0 36 NNNNNNNNNN ............................... GCAGTTTTACGATGTATTTAATCAAAAGGAATTCTA 1702 31 100.0 36 NNNNNNNNNN ............T.................. CCAACCAATAGAAAAAATAATAAATGCTGATAAGAG 1769 31 100.0 36 NNNNNNNNNN ............T.................. CATTTTAGAAAGTTATTTGTTAATATCATGTGTTAT 1836 31 100.0 1 NNNNNNNNNN ............T.................. NNNNNNNNNN ========== ====== ====== ====== ========== =============================== 9 31 37 GTTTCCATCCTCCAAGAGGTCTGATTTTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.06%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.60,-3.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [78.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [432,564] Score: 0/0.18 # # Final direction: R [0.27,0.78 Confidence: MEDIUM] >NC_013887 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================== ====== 978913 26 96.2 43 AAAAGAGAAT -......................... TCAAAATTACTTGAAGAATATAACCTTAAAGTTAGCATGTTTC 978982 26 100.0 46 AGCATGTTTC .......................... ATTTTTAAAGGAGATGTAAGGATTACGGCACGAAAACAATTTCCAT 979054 26 96.2 46 CAATTTCCAT .C........................ ATAGATGATGTTCCTTCTGGAATGCCACAAGATATATTTGAGTTTC 979126 26 100.0 43 TTTGAGTTTC .......................... CATTTTAGAAAATTATTTACTAATCTTTTAGCTTATAAGTTTC 979195 26 96.2 41 TATAAGTTTC .................T........ TATTCAAGAAATAATAAAGAGGAGTTTGAGACACTAGTTTC 979262 26 96.2 41 CACTAGTTTC .................T........ TTGCTCGGGGTGAAAGAATGAAGTTAGATGTAATAAGTTTC 979329 26 96.2 AATAAGTTTC .................T........ AGGGCAATCA ========== ====== ====== ====== ========== ========================== 7 26 43 CATCCTCCAAGAGGTCTGATTTTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:57.69%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.40,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [186,351] Score: 0/0.18 # # Final direction: R [0.27,0.78 Confidence: MEDIUM] >NC_013890 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1176477 29 100.0 32 NNNNNNNNNN ............................. CCCCTCCGTTCCCTTTATTAGAGATATTTAAC 1176538 29 100.0 32 NNNNNNNNNN ............................. CCTAACCGACAATTAGCACATAACTCGCCCTG 1176599 29 100.0 31 NNNNNNNNNN ............................. ATAATGGACGCTGTGGAACTGTAGAGATGCA 1176659 29 100.0 32 NNNNNNNNNN ............................. ACTGCCGCAAATAGTGCCCACATGGCGCCTAT 1176720 29 100.0 33 NNNNNNNNNN ............................. TGGGGCTAAGATGCACGAATACATAGTCAACTA 1176782 29 100.0 33 NNNNNNNNNN ............................. ATCGCTAGGGCTTGCCGAACTAAGTATTTACTC 1176844 29 100.0 32 NNNNNNNNNN ............................. CACGCAGTAATATAATATTCATTCACATAAGG 1176905 29 100.0 32 NNNNNNNNNN ............................. GGTTGGGGAGAATACTGTAAGGCTTCCGAGGA 1176966 29 100.0 33 NNNNNNNNNN ............................. ACCAGCTAGTGAATTAACTACTAATAATGCGAC 1177028 29 100.0 32 NNNNNNNNNN ............................. CAATAGGAAAAGTCTTGTCAATTCCCTTCCAG 1177089 29 100.0 32 NNNNNNNNNN ............................. ACCTTCAATTTCAGAAGCTAGTTTGGGAGAGA 1177150 29 100.0 32 NNNNNNNNNN ............................. ACTCTCTGGCTAGTTGTTCTATGATTGCATCA 1177211 29 100.0 32 NNNNNNNNNN ............................. TTTGTTCTTTGAAATATGCCGCATCGCTAGGG 1177272 29 100.0 32 NNNNNNNNNN ............................. CTAGGAGTCAAGCATCGAGTAGCCAAAGAGGC 1177333 29 100.0 32 NNNNNNNNNN ............................. AGACAGATGTGCGTATAAACGGGTGGTCATCT 1177394 29 100.0 32 NNNNNNNNNN ............................. TTCCACCAGAACGAAGCGTTTTTCATAACCAC 1177455 29 100.0 32 NNNNNNNNNN ............................. TTTAGTCTTTTCGCTACCCATCCTGTAGTTCC 1177516 29 100.0 32 NNNNNNNNNN A............................ GTCTCTGGACATATCACCGCTGGCCTTGATTT 1177577 29 100.0 32 NNNNNNNNNN ............................. GCAGTAGAGGATATCCCGTCTTGGCCCGCGTT 1177638 29 100.0 32 NNNNNNNNNN ............................. GTGCATCTATTGCGTACCGCCAGTACAGGTGC 1177699 29 100.0 33 NNNNNNNNNN ............................. CCTGGTGAAACTGAAGAAGACAAGGAACTGACA 1177761 29 100.0 33 NNNNNNNNNN ............................. GTACGGTCTGGGCCGTATAGGCAGGATTGAGGG 1177823 29 100.0 32 NNNNNNNNNN ............................. TCCTGAACGCTCATAATGGCATCTGAAGAGAC 1177884 29 100.0 32 NNNNNNNNNN ............................. GTATCCCCTATATATTGCCACAAAAATAGCTA 1177945 29 100.0 32 NNNNNNNNNN ............................. TACTGGCTATGGTGCATGGAAACAGATGAATT 1178006 29 100.0 32 NNNNNNNNNN ............................. GGGTCTACAGCGTGAAAATGGTCTAAACGCCA 1178067 29 100.0 32 NNNNNNNNNN ............................. TTATAGTTGTGTATGATGAGCCAGAATTAGTA 1178128 29 100.0 32 NNNNNNNNNN ............................. AACTTGGTAACCGGCTTTGATAACCATGCTAA 1178189 29 100.0 32 NNNNNNNNNN ............................. ACCAATGGTTAGAGGTGCACCCTTTTTGTAGC 1178250 29 100.0 32 NNNNNNNNNN ............................. TTCTCCCGCACAAGGCACATACCCCGTTGCTC 1178311 29 100.0 32 NNNNNNNNNN ............................. TATCATATGGCACTAGGGGGTGTTTGCAGATC 1178372 29 100.0 32 NNNNNNNNNN ............................. CCCCTCAATACAGTACGACTCGCAATTAGTAC 1178433 29 100.0 32 NNNNNNNNNN ............................. GCGTCCATCATATGGCTGTACTGGTGGGTGGT 1178494 29 100.0 33 NNNNNNNNNN ............................. TTCAGCTGCTTTTTCGGGCTTGTCCACCTTGTC 1178556 29 100.0 32 NNNNNNNNNN ............................. CATTCTTTTTGACTGATTTTTATCTCGGCTGT 1178617 29 100.0 32 NNNNNNNNNN ............................. TAGCTAGTGAGTTGACTACTAATAATGCCACT 1178678 29 100.0 31 NNNNNNNNNN ............................. GTTTGACGTCTTTGAGTTGTCTGGCATATTG 1178738 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 38 29 32 CGGTTCACCCCCACATGCGTGGGGAATAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-10.90,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [55.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [207,42] Score: 0.18/0.18 # # Final direction: F [0.55,0.27 Confidence: MEDIUM] >NC_013889 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2575298 28 100.0 32 NNNNNNNNNN ............................ TCTATAACTTTTGTGTGGAACTCCCTAACTGT 2575358 28 100.0 32 NNNNNNNNNN ............................ CTGAGATCAGCGTCCCTGAGATTAGCGCCCCC 2575418 28 100.0 32 NNNNNNNNNN ............................ TATACTTGGAGTTTTTCAACGATTACTCAACC 2575478 28 100.0 32 NNNNNNNNNN ............................ AGTACCAGCCAAAGTATTTTCTGCTGGAAAAT 2575538 28 100.0 32 NNNNNNNNNN ............................ ATGACTGACGAAGCTACTGAGATGCTCATTAA 2575598 28 100.0 32 NNNNNNNNNN ............................ CGATCGGCCGACCGTCGATTCGGGCGAGGAAC 2575658 28 100.0 32 NNNNNNNNNN ............................ TAATGGCTGGGCGACCGACAAAGTACAACGAA 2575718 28 100.0 32 NNNNNNNNNN ............................ ATCCGCGCGCGCAGCGCCAACCTGCGTGAGGG 2575778 28 100.0 32 NNNNNNNNNN ............................ TTGAAGATGGCCACCACGAACATGCCAATCGA 2575838 28 100.0 32 NNNNNNNNNN ............................ TGGATCAAATCAGGTTCCGTGAAGAGCTGACC 2575898 28 100.0 32 NNNNNNNNNN ............................ CCGTCTCCCCACGGGGCTTTTTTTCGTCTAGA 2575958 28 100.0 32 NNNNNNNNNN ............................ TGACCCGTACCGATGCGCAGATATTCGCGGGA 2576018 28 100.0 32 NNNNNNNNNN ............................ TCAGACGAGCGCTGCGGTCAGTGCGACCATGG 2576078 28 100.0 32 NNNNNNNNNN ............................ CCAGAGATTAGCGCCCCTGAGATTAGCGTCCC 2576138 28 100.0 32 NNNNNNNNNN ............................ AAACAGAGCCCCGGCAATCAACAGCACCACAC 2576198 28 100.0 32 NNNNNNNNNN ............................ ACACCGTCAGGCTGCTCCACTTGCATCTCCAG 2576258 28 100.0 32 NNNNNNNNNN ............................ TCACGGAGCTGGCGGACGCTCGCGCCGGTATC 2576318 28 100.0 32 NNNNNNNNNN ............................ TCAGGGGCAGCCGGTGCGGCAGGAGCCTCAGG 2576378 28 100.0 32 NNNNNNNNNN ............................ ACGAACAGACAAGCACCGTCCTGCGTGACCTC 2576438 28 100.0 32 NNNNNNNNNN ............................ ATGGGGGAGCCACTGTTGGCGCTGATAGCCTT 2576498 28 100.0 32 NNNNNNNNNN ............................ AATCGTCACGACCGAACATGCCACCGGGGTCA 2576558 28 100.0 32 NNNNNNNNNN ............................ GCACACCGTGGACATGCAGATGAACCCGGTGA 2576618 28 100.0 32 NNNNNNNNNN ............................ ACGGATGTCCGGGCCCTGGTCGACGTGCATGA 2576678 28 100.0 32 NNNNNNNNNN ............................ TACACGGCGCAGGAGCTCCTGGAGGACTGGGC 2576738 28 100.0 32 NNNNNNNNNN ............................ AGCTCCAGCTCAAAGCGATCCGCGATCTGCTC 2576798 28 100.0 32 NNNNNNNNNN ............................ TTGAGCCGTCTGCGCGAGCGGCTGCTGGAGCG 2576858 28 100.0 32 NNNNNNNNNN ............................ ACCCGCCCCGGTGACTACTGGTACCACATGGT 2576918 28 100.0 32 NNNNNNNNNN ............................ ACCATCACCGACAGCGACACCCGCGCCATCCC 2576978 28 100.0 32 NNNNNNNNNN ............................ ACCAGATCCGCCGTCTTCGAACGCCCGGACAC 2577038 28 100.0 32 NNNNNNNNNN ............................ TCATCCAGGCGCACCGCCTGGCCCGCCGTGGC 2577098 28 100.0 32 NNNNNNNNNN ............................ ACATCACCGGGCTCGACCTGGTGGGCGAGACG 2577158 28 100.0 32 NNNNNNNNNN ............................ GACCGCGACCGCTACACCGGCGTGATCGCCCA 2577218 28 100.0 32 NNNNNNNNNN ............................ CGAGGTGCGGGCAGACTGCGACACCGCCGAGG 2577278 28 100.0 32 NNNNNNNNNN ............................ ACCCAGGGGTCGCGGATGGGCACCGTATCCCC 2577338 28 100.0 32 NNNNNNNNNN ............................ GTCCGAGGCCGCCAGCTCCGGCGGCTCGCTGC 2577398 28 100.0 32 NNNNNNNNNN ............................ GATCCACCAGGTCCAGTACAACGCTCGCTTGC 2577458 28 100.0 32 NNNNNNNNNN ............................ ACCCCGCGACCGTGTACGTCACCCCGCGAGAG 2577518 28 100.0 32 NNNNNNNNNN ............................ AGCTCGTTCGGCAGCATCCCCGCCATGCGCTG 2577578 28 100.0 32 NNNNNNNNNN ............................ AGCATGGACATCATGCGCGAGGTGTCCGACTC 2577638 28 100.0 32 NNNNNNNNNN ............................ ACCTGATCCAGCCCGGAGCGCCGGCGCAGCTC 2577698 28 100.0 32 NNNNNNNNNN ............................ CCCTCGATTGCGGGCCGTTGGCGAGGCTGGCG 2577758 28 100.0 32 NNNNNNNNNN ............................ AGCCCTCGCACCACCTCGCCTCGCCTCCTCGC 2577818 28 100.0 32 NNNNNNNNNN ............................ TCTCCCAGTGGTGCAACGAGGCGCGCCGCGTT 2577878 28 100.0 32 NNNNNNNNNN ............................ ACCACATCGTTGCGCAACCCCAGGATGGTCCC 2577938 28 100.0 32 NNNNNNNNNN ............................ ACCCTGCGCCGGAGCGACGGCGACCAGCACCG 2577998 28 100.0 32 NNNNNNNNNN ............................ GATGCGCAGGGCGAAGGTGCCGCGCGGGCCTT 2578058 28 100.0 32 NNNNNNNNNN ............................ ACCGGAACAGACCCCGCGCGATCGTCCGATCC 2578118 28 100.0 32 NNNNNNNNNN ............................ CATCGCCCGACGAATCAGACCGAACACGACCA 2578178 28 100.0 32 NNNNNNNNNN ............................ TCGGGAAAGGTACAGCCGAAAACGTTATCCAG 2578238 28 100.0 32 NNNNNNNNNN ............................ GAATCCGCCAACGATTTCGGCGTCGGCGAAGC 2578298 28 100.0 32 NNNNNNNNNN ............................ ATCTCGAAGGCGACCACGGCGACGTTGCCCTG 2578358 28 100.0 33 NNNNNNNNNN ............................ GTTTTTTTCGGCGATCCGCTCATACCCCAAAAC 2578419 28 100.0 32 NNNNNNNNNN ............................ TTGAGCTCGACGGCCAGGCGGCCGTTGGTGGC 2578479 28 100.0 32 NNNNNNNNNN ............................ CACGTGAAAGCCGCCGATGCGGCGGGTAGTTT 2578539 28 100.0 32 NNNNNNNNNN ............................ AACCTGATCGGCACGGTCGAGAATGGCCAGAA 2578599 28 100.0 32 NNNNNNNNNN ............................ CTTCAGCTCAGCGGCAAGGCCCGACAAGACGA 2578659 28 100.0 32 NNNNNNNNNN ............C............... TGGGCGCCTCCCCTGTGCTTGCGCCCCCGACC 2578719 28 100.0 32 NNNNNNNNNN ............................ AATGGTGCAACGCGGCAGAACGACAGCAAGCG 2578779 28 100.0 32 NNNNNNNNNN ............................ TGCCACTGGTCGGGATCTAAACGCGACGCGAG 2578839 28 100.0 32 NNNNNNNNNN ............................ ATTGGCTCAGGACAGGCAGTGGGACACCTATC 2578899 28 100.0 32 NNNNNNNNNN ............................ AGGGTGCGCCGGCGCAGCATGGCCTTCAGGTG 2578959 28 100.0 32 NNNNNNNNNN ............................ CCCTCGATTGCGGGCCGCTGGCGCGGCTGGCG 2579019 28 100.0 32 NNNNNNNNNN ............................ TTCCGGCGTACCAGGACTACACCGCCCGCGCC 2579079 28 100.0 32 NNNNNNNNNN ............................ ATGATCGCGCGGGCCGACTCCGGTGATACCGA 2579139 28 100.0 32 NNNNNNNNNN ............................ TCGTCGCTGCGCTTGATCGCTTGATCGCTTCG 2579199 28 100.0 32 NNNNNNNNNN ............................ GAGGGGGATACGCTCACTGCGATCGCTCGCAC 2579259 28 100.0 32 NNNNNNNNNN ............................ AAGATTCATCGCGATCCGCGCTTTCCTACCGG 2579319 28 100.0 32 NNNNNNNNNN ............................ CGAGTTTGTGCGCTGGCTGTCGGAACAGATGC 2579379 28 100.0 32 NNNNNNNNNN ............................ AAGACCATGCTGGATTCCTGCAATGGACTGAT 2579439 28 100.0 32 NNNNNNNNNN ............................ AAGCCAGATCTGCGTGGCGCTGCTGCACGGGT 2579499 28 100.0 32 NNNNNNNNNN ............................ ACCTCGGTCACCACCTCGATGCCGAACGGATC 2579559 28 100.0 32 NNNNNNNNNN ............................ CGGATGCGCTCGCGCAGCTCCGGCAGTGAAGC 2579619 28 100.0 32 NNNNNNNNNN ............................ ATGTACGTCGACGCCAAGGGCGTGAGCTTCTT 2579679 28 100.0 32 NNNNNNNNNN ............................ ACCGACGCCCACCGCTCCGAAAGCAGCCTGTC 2579739 28 100.0 32 NNNNNNNNNN ............................ ACCAACGGGAACCCGCTGTTTCATTACGCCTT 2579799 28 100.0 32 NNNNNNNNNN ............................ TACGGTCGGCGGTTCGGTCCGGACCTGAAGCC 2579859 28 100.0 32 NNNNNNNNNN ............................ GCCCAGGCCGCCCTTGGCCCCTACCTGCCGGA 2579919 28 100.0 1 NNNNNNNNNN ..........TGTGC.......A.CTG. NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 78 28 32 GTTAGCTGCCGCACAGGCAGCTCAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [63.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [132,103] Score: 0/0.18 # # Final direction: F [1.42,0 Confidence: HIGH] >NC_013891 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1174123 36 100.0 30 TGTTATTGCA .................................... CATATTTCCAAACTCCACTTTGACTACACC 1174189 36 100.0 30 TGACTACACC .................................... GGTCCCACTACTTGAGGTACGAACATATCA 1174255 36 100.0 30 GAACATATCA .................................... TTAGTCAACCCCTCGCTGCATTTTCACATT 1174321 36 100.0 30 TTTTCACATT .................................... GATGGATAATAGGGATAGATCATTAGTCCG 1174387 36 100.0 CATTAGTCCG .................................... GTCTAATGTG ========== ====== ====== ====== ========== ==================================== 5 36 30 GTAAGAGACTACCTCTATATGAAAGAGGACTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.89%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-5.90,-6.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [291,7] Score: 0.18/0.18 # # Final direction: F [0.18,0 Confidence: MEDIUM] >NC_013891 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 443925 29 100.0 36 NNNNNNNNNN ............................. AATAATGTTCAATACAATGGTGGTAATACCATGAAG 443990 29 100.0 35 NNNNNNNNNN ............................. AAAACCAACGACGTATAACAAAATTGGCGATGGAT 444054 29 100.0 36 NNNNNNNNNN ............................. ACTAACGTAGAAGCGGGGGCGGTAACGACTACTAGC 444119 29 100.0 35 NNNNNNNNNN ............................. AGATTTGAAAAAGGCAATCAAGTTTTTGGAATTTG 444183 29 100.0 36 NNNNNNNNNN ............................. CTTCAAAGAGCAAAATAAACAAGCACTAAAACGTTT 444248 29 100.0 35 NNNNNNNNNN ............................. TCTAATGGGACATGATGGTGATATCGTTGATACTT 444312 29 100.0 38 NNNNNNNNNN ............................. ACCTGTTAGGTCGGGAGGATTCGAGAGGTTTAGTTGTT 444379 29 100.0 34 NNNNNNNNNN ............................. CGAACTTGTAGCGTATGCCGTTACCTACAGTGCA 444442 29 100.0 35 NNNNNNNNNN ............................. GACTTAGAGGAGTTAGGAGCCGTAGAATCCTCATC 444506 29 100.0 34 NNNNNNNNNN ............................. ATGAAACCAGAAACAACGGAAAACCTTCACGAAT 444569 29 100.0 36 NNNNNNNNNN ............................. ATAGCATCCCCAGCCTCATAGTTCCCCATGATAAAC 444634 29 100.0 35 NNNNNNNNNN ............................. ATTTACTTATACATGGGTCACCATGCCAAGATTTC 444698 29 100.0 35 NNNNNNNNNN ............................. AAAAACACAAGTGGTTCCTGAAATCGACAAATACC 444762 29 100.0 36 NNNNNNNNNN ............................. TCCTTTAGATACTCTCCCTCATCAAACACTATCTCC 444827 29 100.0 36 NNNNNNNNNN ............................. TCATTCATTCCGCTATTCCAAATCTCAATAGTATCG 444892 29 100.0 36 NNNNNNNNNN ............................. ACGGTCTATCGAGCGAAGGCGGGAAATTTTGGTAAA 444957 29 100.0 36 NNNNNNNNNN ............................. TCATATTGCCCTTTCAATCCCCATCTTGCATTCATT 445022 29 100.0 34 NNNNNNNNNN ............................. CCCCTCGAATGGCTTCATCATCGCATGTGCCTAG 445085 29 100.0 34 NNNNNNNNNN ............................. ATCATTATTGATGTTACTAGCAAAATTCCACTTG 445148 29 100.0 37 NNNNNNNNNN ............C................ TAGTAGGAATTTCCGGTTCTTCAGTTTCCGGTAAAGA 445214 29 100.0 37 NNNNNNNNNN ............................. TTGCCAGTTGTCCCAAAAACGCGCCCCAATCTTCTCG 445280 29 100.0 33 NNNNNNNNNN ............................. GAAAAAGAATATGTATTCCACAATGCTAGTTTT 445342 29 100.0 36 NNNNNNNNNN ............................. GTAATTAAAATTGTCCTATTTTCTAAATCTATCAAG 445407 29 100.0 37 NNNNNNNNNN ............................. TCTGCATTATCTGAATCTGATTTAGCTTGCTCCATCT 445473 29 100.0 37 NNNNNNNNNN ............................. GTTTTTGGTAATGGTTTTGGTGGAATTTTTTCATTGA 445539 29 100.0 36 NNNNNNNNNN ............................. CCAGAAAAGTTGCATATAATCTTTCCGCTTGGGTTC 445604 29 100.0 35 NNNNNNNNNN ............................. ATATACGGTATCCGGTATACTCGCCGTCCCATTCT 445668 29 100.0 1 NNNNNNNNNN ........C....C..A.........T.A NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 28 29 35 GTTTTAACTACTTATTGTGAAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [376,297] Score: 0/0.18 # # Final direction: F [0.41,0.27 Confidence: LOW] >NC_013891 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 454307 29 100.0 35 NNNNNNNNNN ............................. GAATACTGAAACGGCTGTTCAAGCTAATTATTTTT 454371 29 100.0 37 NNNNNNNNNN ............................. CTTTTTAACTTAAATTATATTATACTAATTAAGTTTG 454437 29 100.0 34 NNNNNNNNNN ............................. AAATTTAGGAGGAACTTAAAAATGAACAGATACG 454500 29 100.0 37 NNNNNNNNNN ............................. CTCTTCCGCGAGTGCCTTTTGACTCTTGTAGCGCTTT 454566 29 100.0 37 NNNNNNNNNN ............................. CAGGTAATCAAGCTGAAACGATTAAAGGAATTAAAGA 454632 29 100.0 37 NNNNNNNNNN ............................. TTGGGAATTCGTGGTAATATTGTACTACGGGAATAAG 454698 29 100.0 36 NNNNNNNNNN ............................. GCACGAGGCGAATCGGCAGGAATAGGTTCCTTCATT 454763 29 100.0 36 NNNNNNNNNN ............................. ATACCCAATTGCCATTCTCATCTCGTTCATAGTCCC 454828 29 100.0 38 NNNNNNNNNN ............................. GTATTTAGGTTGAGATTAACATACCCGAAATAACTATC 454895 29 100.0 36 NNNNNNNNNN ............................. TTGGACTTTAGTTTGACTGTCTCTGGTACTTTAGTC 454960 29 100.0 34 NNNNNNNNNN ............................. TCAGGCAACACCTTAAGCGCCTTGAATAGATTCA 455023 29 100.0 37 NNNNNNNNNN ............................. CAGAAGCAATGCACCAGCCACCGCTAAAAATGTAATC 455089 29 100.0 37 NNNNNNNNNN ............................. GCAGTTACAAATTTAATAATTTCATTTCTATATTTTA 455155 29 100.0 34 NNNNNNNNNN ............................. TCTTGTATTGCTTCTTTAATACACATGCGCATAT 455218 29 100.0 36 NNNNNNNNNN ............................. CCTCGAAAGTACGTATGAGCTTGTAACGGGATTCAT 455283 29 100.0 35 NNNNNNNNNN ............................. CTACCTTGCAGCGACAGCGCGTAAGTCGCAACATC 455347 29 100.0 35 NNNNNNNNNN ............................. TCTGTTGCAAACGCTATGCGTATTGCAGAAGTGCT 455411 29 100.0 36 NNNNNNNNNN ............................. CGCTGTCATGGCATAAGTATGGACCGTGGAATTATA 455476 29 100.0 36 NNNNNNNNNN .......................A..... ACGAGATGGTAAGAACGCATTGTTTGACTCGCTCCA 455541 29 100.0 37 NNNNNNNNNN ............................. AAAAGTATTCGCTTCTTTGATAAATCAATTCCATCAA 455607 29 100.0 36 NNNNNNNNNN ............................. GCAGGAAAGGGAGAAACTTCATTAGATGGGCTAAAG 455672 29 100.0 34 NNNNNNNNNN ............................. AGATGTGCCGGACTTCACCTATGTGCCAGTTAAG 455735 29 100.0 37 NNNNNNNNNN ............................. TTCAAAAACGGGCAAGGAGAACAAGAAGCTGATTTTA 455801 29 100.0 29 NNNNNNNNNN ............................. ATAATTTCTTTTATCTTTTCATTCTTATC 455859 29 100.0 37 NNNNNNNNNN ............................. CGAATAAGTAGAGCTGGGATTATAATAATTTCCTTCA 455925 29 100.0 36 NNNNNNNNNN ............................. AAAAATGGATGAAGCAGGGTATGATGCAGAATGGGA 455990 29 100.0 34 NNNNNNNNNN ............C..........A..... AAAAGTTCGATTGCTTTTTAATCGTCCAAATATT 456053 29 100.0 1 NNNNNNNNNN .......AC......CA......A...CC NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 28 29 35 GTTTTAATTACTTATTGTGAAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:82.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [200,183] Score: 0/0.18 # # Final direction: F [0.78,0.27 Confidence: MEDIUM] >NC_013892 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3628576 29 100.0 32 TGAAATTAGA ............................. ACACAAATGAGTATCGATTTAGTGCATGCACA 3628637 29 100.0 32 TGCATGCACA ............................. TCCCAGTTTTCTCTGATCCAATAGTCCTTGGT 3628698 29 100.0 32 AGTCCTTGGT ............................. GCAGAACTGTCAAAGAAATGTAGCGCCATTCC 3628759 29 100.0 32 GCGCCATTCC ............................. CCTTGAGCGACAAACATCCCATCTTTTATGGT 3628820 29 100.0 32 CTTTTATGGT ............................. TGCAGTTCCAGACTCTGGATGGCAGATTTCAT 3628881 29 100.0 CAGATTTCAT ............................. GATTCATATAC ========== ====== ====== ====== ========== ============================= 6 29 32 GTGTTCCCCGTAGGTACGGGGATAAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [6,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-10.20,-10.20] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [78.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [281,103] Score: 0.18/0.18 # # Final direction: F [0.45,0 Confidence: MEDIUM] >NC_013892 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3646497 29 100.0 32 CTCTTATTGT ............................. GAGACTCACGCCATGTCATGACTGAAAAATTT 3646558 29 100.0 32 TGAAAAATTT ............................. ATGATGCCACGTTACTATTCGCCATACCTAAT 3646619 29 100.0 32 CATACCTAAT ............................. TTTTCATATAGGACTCATCAGGATCAGCCAAT 3646680 29 100.0 32 ATCAGCCAAT ............................. TCTATTGAGCGTCCAGCACTGAGTTTATTGTC 3646741 29 100.0 32 GTTTATTGTC ............................. GTAATGCCGGATTAAAAACGGGGATTGAAATT 3646802 29 100.0 32 GATTGAAATT ............................. CCTGCAATGGGAACATACTTCGCGGGGTCGTA 3646863 29 96.6 CGGGGTCGTA ............................A ACAGCAGAA ========== ====== ====== ====== ========== ============================= 7 29 32 GTGTTCCCCGTAGGTACGGGGATAAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [6,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-10.20,-10.20] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [144,192] Score: 0/0.18 # # Final direction: F [0.41,0 Confidence: MEDIUM] >NC_013893 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 29464 36 100.0 37 NNNNNNNNNN .................................... TTCTGTATTTCTATTAACCAATTCATAAGTGTCATTA 29537 36 100.0 35 NNNNNNNNNN .................................... TTCATCATATCCTTTTATATAGTTTTTGTTTTGTT 29608 36 100.0 35 NNNNNNNNNN .................................... CCAGTTGCTATTTTATTTGTCAACCATTTTATTAA 29679 36 100.0 32 NNNNNNNNNN .................................... TAGAATGTTTAAACAAGGTGTTTCAAAACCTG 29747 36 100.0 39 NNNNNNNNNN .................................... AACATTTTATTTACGTCTGTTTTTGCCTCTACTAAGTAA 29822 36 100.0 36 NNNNNNNNNN .................................... TCGCTATTCAATAAGTTTTGTATTTGTTGTCTCATT 29894 36 100.0 1 NNNNNNNNNN ..............................A.A..G NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 7 36 35 AATCAGAGAATACCCCGTATAAAAGGGGACGAGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.20,-7.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [188,195] Score: 0/0.18 # # Final direction: F [0.78,0 Confidence: HIGH] >NC_013894 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1496455 29 100.0 37 NNNNNNNNNN ............................. ACTATCCTGAACTTCTCACACAGTATGCAAAACAGCG 1496521 29 100.0 36 NNNNNNNNNN ............................. TGCTGGACAAGGCACTGGCAAGGATGAGACAAAGAT 1496586 29 100.0 39 NNNNNNNNNN ............................. TACTTATCAAGCGTTTCCTTGATAGCTTTTTTGACGTAG 1496654 29 100.0 37 NNNNNNNNNN ............................. TATCAATGACTTGAGGGCTGACACCACCTTCTTTTTT 1496720 29 100.0 39 NNNNNNNNNN ............................. GTGGTAGAGAAAGAGGTCTCTTTGTAGCAATTGATTGCA 1496788 29 100.0 39 NNNNNNNNNN ............................. TACTTATCAAGCGTTTCCTTGATAGCTTTTTTGACGTAG 1496856 29 100.0 38 NNNNNNNNNN ............................. GGGAACGAGGGTGGAGCTTGGTAGCATAGTACAAGAGA 1496923 29 100.0 38 NNNNNNNNNN ............................. CCGCCATTACCCATTTTGGGAAGTGATGGCGGAAGCAA 1496990 29 100.0 37 NNNNNNNNNN ............................. GAGATAATGCAGATTGTTTTACAGTACAATGAGCAAC 1497056 29 100.0 42 NNNNNNNNNN ............................. CCTTGAGGAGCTAATCAGGGAAGAGCTTGGTCCGATGGGGGT 1497127 29 100.0 38 NNNNNNNNNN ............................. TATCCCATCTCCCCAGCTATCTTTTCAAGCACAGCAAA 1497194 29 100.0 38 NNNNNNNNNN ............................. CATTAGCTTTTTCATGCCTAAGTCATTAAAAGAGGAGC 1497261 29 100.0 36 NNNNNNNNNN ............................. GCCAGTATGCATATATAATGTGTAGGAAAATACCTA 1497326 29 100.0 39 NNNNNNNNNN ............................. ACGAGTCCACCGCCAGAGTATTAAGTACATTGTTGGGGA 1497394 29 100.0 37 NNNNNNNNNN ............................. AAAGATACAAAGCCCCGCCAGTAGCTATGCAAACATA 1497460 29 100.0 38 NNNNNNNNNN ............................. AGAAAATTACGGAAATGGAGAATGATCCAAAACTCATG 1497527 29 100.0 59 NNNNNNNNNN ............................. CCACACGGTACATTAGAAACGTCCGAGATCCTCTTTGAAGAAGTGTTGTATCTCCTGCG 1497615 29 100.0 40 NNNNNNNNNN ............................. AAAAAGGAAGAAGGGATAATAGTTGGTAGCGTGGACATAA 1497684 29 100.0 37 NNNNNNNNNN ............................. TTGTCTCACCCCACGGAGATGTGATAGGATCAGCATC 1497750 29 100.0 39 NNNNNNNNNN ............................. TCACCAAACACCTTAATCCCAAAAGCTTCATAGAGTTTC 1497818 29 100.0 41 NNNNNNNNNN ............................. ACTTAGGAGTGGCATGCCTGCCTGATAGGTCTTGCCATATT 1497888 29 100.0 39 NNNNNNNNNN ............................. GCAACGCCTTCCCGCTTTTTACAAAAGCAAAAAACCAAA 1497956 29 100.0 37 NNNNNNNNNN ............................. GCTGAGGAAGCACTCGTGGATGAGGATAACAGCATAG 1498022 29 100.0 41 NNNNNNNNNN ............................. ATAGTGAAAAAGAGGCTCCCTTCATTCAATCTCCACCAACG 1498092 29 100.0 35 NNNNNNNNNN ............................. TCATAAACCGCCCCAGTTTGCACTGCTATCCTCAG 1498156 29 100.0 37 NNNNNNNNNN ............................. GACCCCTCAGTTCTTGCCTCACTTCCTCAATGCTGGA 1498222 29 100.0 36 NNNNNNNNNN ............................. CTTGTTATCTCATGAGTTTCCCCTATCTTCACAATG 1498287 29 100.0 42 NNNNNNNNNN ............................. ATCCCTATACACCACTAACAGCTTTTGTGGTTTAGTAGAGAA 1498358 29 100.0 37 NNNNNNNNNN ............................. GGGTAGTGCGGAAAGGCTTGAGAAGAAGTTTTTAAGA 1498424 29 100.0 37 NNNNNNNNNN ............................. AGACAGGAGGTGAGAGAAATGAAGAAGTTCATTTTAA 1498490 29 100.0 36 NNNNNNNNNN ............................. CTGAAAGGGAAGATTGACCCCCACTCCTAAGGCACT 1498555 29 100.0 37 NNNNNNNNNN ............................. TAATTCCACTATCAGAATGGTTCTTGAAGAAGTTCAA 1498621 29 100.0 36 NNNNNNNNNN ............................. TGAAGGAAGAGAAGGAAGTTATACCTTCCATTTTTA 1498686 29 100.0 40 NNNNNNNNNN ............................. TTGAGTAGCCCCTTTGCTTGCATACTCTCGTTAGCCTGCC 1498755 29 100.0 37 NNNNNNNNNN ............................. AAAACAAGTTCTACGAGCTTTACAGTGATGCTAAGAG 1498821 29 100.0 38 NNNNNNNNNN ............................. TTTTTCAACAAACTACTTGTATTTGTCTCAGTATCATG 1498888 29 100.0 40 NNNNNNNNNN ............................. TGAAAAGTAGTTCTGCTTTCATTACAAAAAAACTTTTAAA 1498957 29 100.0 39 NNNNNNNNNN ............................. AAATCAAGTAGCAATTAAAAAAATCCAAATCCAATAAAA 1499025 29 100.0 38 NNNNNNNNNN ............................. TATCGCTGAACACCTCTCCAGTTAGAGTGCATCTGAAG 1499092 29 100.0 37 NNNNNNNNNN ............................. TTCAAGTATTTACAGAGAGATGCAGGATATCTCTTAG 1499158 29 100.0 39 NNNNNNNNNN ............................. CCTTGGAGGGTCAGAAAGGTTTGATGCATAACAAGTATG 1499226 29 100.0 41 NNNNNNNNNN ............................. TCCTGTGAGGGATGTAGAGGTGGAAAGTAAAGACTTTTCAA 1499296 29 100.0 37 NNNNNNNNNN ............................. AAGGGATTGAAACTGAAAAATCCGCCACCACAGAACA 1499362 29 100.0 37 NNNNNNNNNN ............................. ATGCTTGGAAAGGCTCTGAAAGAAGGAACTCTCACAA 1499428 29 100.0 38 NNNNNNNNNN ............................. GAAGATGGGCTAAATGTTTTCGTGGATACTGCAGAAAA 1499495 29 100.0 40 NNNNNNNNNN ............................. TCTGTTCCTGTCAGTCCTTCCTCTTTCTCTGATACGTCAG 1499564 29 100.0 35 NNNNNNNNNN ............................. TGTTGTAGGGGTGGCGGGTTCTGTCTGTTGTTGCG 1499628 29 100.0 37 NNNNNNNNNN ............................. CTGAATTCTGTACCTTTCCAACTTTTTTCTGTTGTTC 1499694 29 100.0 42 NNNNNNNNNN ............................. AATCTCAGTGTTTGCTGGTACATCCGCCCCGAACGGAAAACT 1499765 29 100.0 41 NNNNNNNNNN ............................. GGGCAAAGGAAGGAAGCGTAAAATAGTTAAAAAACTTCAAA 1499835 29 100.0 40 NNNNNNNNNN ............................. GTGGTTGAAGTATCTGCTGGAAGAAGGGTGACGATACTGA 1499904 29 100.0 38 NNNNNNNNNN ............................. CAGAGTGATGTCACACAAGATGTGAGACTTGTTGCATC 1499971 29 100.0 38 NNNNNNNNNN ............................. TGAAGCTGATGAGGAATGCATCAAAGAAAATTTCAGGA 1500038 29 100.0 37 NNNNNNNNNN ............................. ACTCTCTCCACCGCATCAGCACCACCTGTGTCCTCTG 1500104 29 100.0 38 NNNNNNNNNN ............................. CACGGAAAAACCGCACCGCACCGAAAAAGGTTAGGAAG 1500171 29 100.0 37 NNNNNNNNNN ............................. CATGTATCTTTTCCACCGCACAGTTTCCAGAGACTCA 1500237 29 100.0 38 NNNNNNNNNN ............................. TTGCGAATTTGTCCGCTTACGCGGACCGAACCTTTAAG 1500304 29 100.0 38 NNNNNNNNNN ............................. AATGATTTTGTTTCGTTGTATACGCGTGTCTTCAATGA 1500371 29 100.0 39 NNNNNNNNNN ............................. GGATACAAGGTACAAGATAGTACAGGTTGCAATAGAGCT 1500439 29 100.0 39 NNNNNNNNNN ............................. TGTAGTCTGTACTTCTTTAATAACCTGTTCTATTGATGC 1500507 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 61 29 38 CTTTCAACTCCACACGGTACATTAGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.62%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.40,-0.70] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [61.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [237,44] Score: 0.18/0.18 # # Final direction: F [0.45,0 Confidence: MEDIUM] >NC_013894 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 177443 29 93.1 37 ATTAAAAACT -...................G........ TAGCTCTTGCAAGTTCAGATTTTCTTTGAAACTCAAA 177509 29 100.0 37 GAAACTCAAA ............................. ACAGAGAGGTCTTAGTAAATTCTGGGCTGAACGTTAC 177575 29 100.0 37 TGAACGTTAC ............................. TCTCCCCGTAAAGCGGATACTTCATCTGTCAGAGCAT 177641 29 100.0 36 GTCAGAGCAT ............................. TAGAAGATGATGAAAACTCGTTCCCTGTTGTCTCCC 177706 29 100.0 36 GTTGTCTCCC ............................. CTGACTATAAAAACTTTTTCGTTGCTCAAATCATAA 177771 29 100.0 37 CAAATCATAA ............................. ACAGAGAGGTCTTAGTAAATTCTGGGCTGAACGTTAC 177837 29 100.0 37 TGAACGTTAC ............................. TCTCCCCGTAAAGCGGATACTTCATCTGTCAGAGCAT 177903 29 100.0 42 GTCAGAGCAT ............................. CTCCACAGCTATGAAGCGTATGAGAAGTTAATGGATCTGAAG 177974 29 100.0 38 GGATCTGAAG ............................. CATGCGTGAGAGACTTATCTATGTAATTTATCCCCTCA 178041 29 100.0 37 TATCCCCTCA ............................. AAGAAAACACGTTCTCCAAAGCTCCCGCCACTTCCTG 178107 29 100.0 37 CCACTTCCTG ............................. GGGGCAGTTTAGGAGCTTCGGCGGGTTGGGTAGTTTG 178173 29 100.0 37 GGGTAGTTTG ............................. AGCCTAAAAGTCAGATGATTGGCACGATGTTTGCTAT 178239 29 100.0 39 TGTTTGCTAT ............................. ACCCAGTGAAGGAAGTCCCCGTGTCAAAACTACTCCCAT 178307 29 100.0 39 CTACTCCCAT ............................. AATACTAGACAAGGATGAAATCCGTAAGGCACTAAAGCT 178375 29 100.0 37 CACTAAAGCT ............................. GGGGCAGTTTAGGAGCTTCGGCGGGTTGGGTAGTTTG 178441 29 100.0 37 GGGTAGTTTG ............................. TTTAACTATGAGCCTGTCGCATATTTCCTTGAGCATC 178507 29 100.0 37 CTTGAGCATC ............................. TGTCCACAATCTTCACTATCTGCGTTGGAATCACCTT 178573 29 100.0 38 GAATCACCTT ............................. CCGTACACCGCTACCCGTAGTTCCTTACCCCAATGAGA 178640 29 100.0 33 CCCAATGAGA ............................. AGGGACGTTTTTGTTGCGTGCGTGCGTGCGTGC 178702 29 100.0 37 GCGTGCGTGC ............................. AAGGGCTTAATGCTATTAAATTCGGTCAAGGATAAAA 178768 29 100.0 42 AAGGATAAAA ............................. CCTTTTAGGGACATCCCTCATGCCTTCTATGTCAAGCCTATG 178839 29 100.0 38 CAAGCCTATG ............................. AGAAATACATGTACTGCTGTTATGACAGTGTGTTTGCA 178906 29 100.0 37 TGTGTTTGCA ............................. CCATGATCACGGTGAGAGTTCTTGAAAAGAATAATGA 178972 29 100.0 38 AGAATAATGA ............................. GTGAAGATAGATAGCCCCGATGAGGCTCTGGATGCTTT 179039 29 100.0 40 TGGATGCTTT ............................. GACAGGTTCAAACTCCCACGACCTCATGGCTAAATACTGT 179108 29 100.0 37 TAAATACTGT ............................. AGTGGTCAGGGAGGAGTTTGACCCCAGACAACTGAGA 179174 29 100.0 37 ACAACTGAGA ............................. AGTGGTCAGGGAGGAGTTTGACCCCAGACAACTGAGA 179240 29 100.0 38 ACAACTGAGA ............................. TCTTGATAGTGTTCCAACTCCTTGCCCGCCTTGAGGAG 179307 29 100.0 37 CCTTGAGGAG ............................. TGTAATCTTGTCAATGCTTTCTTGATAAGATTTGACA 179373 29 100.0 39 AGATTTGACA ............................. TGCTTCCATAATGGTTATATGATTTTTACAATCAATAAC 179441 29 100.0 38 AATCAATAAC ............................. AAACGTCAGGTCTTTCGCTCAGTTATCATTACATTTAC 179508 29 100.0 42 TTACATTTAC ............................. ACATCTACATAGTTCTTGCTGATTACATGCTTCCTTATTTTC 179579 29 100.0 37 CCTTATTTTC ............................. ATTCCTCATAGAGGCTTTTCACCTCCTGAGGAATTTC 179645 29 100.0 37 GAGGAATTTC ............................. TGAATATGTGCCAGAAGACTCCGACGGCAAAAAACTC 179711 29 100.0 36 CAAAAAACTC ............................. TTTAGCCAGTCCTTGAATGGTAATGTTCTTAAATAG 179776 29 100.0 37 TCTTAAATAG ............................. AAGTATTAACTTCTTTAGCTTTTTGAGAGCAAGCTTG 179842 29 100.0 38 AGCAAGCTTG ............................. GGTATGTTAATTGGAGGAATGGGTGGTGGCATGATGGG 179909 29 100.0 39 GCATGATGGG ............................. CATCTTTTCTGCAAAAGACAGAGCAAGGGCATACATAGA 179977 29 100.0 37 CATACATAGA ............................. CGAGGTAAAAGAACTGCTTGTCATAAGAAAGATAATG 180043 29 100.0 36 AAAGATAATG ............................. GATATCTTTTTCAAAACAGATGAGAAATACCAACAT 180108 29 100.0 ATACCAACAT ............................. CCTAACTCTT ========== ====== ====== ====== ========== ============================= 41 29 37 CTTTCAACTCCACACGGTACATTAGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.62%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.40,-0.70] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [213,191] Score: 0/0.18 # # Final direction: R [0,0.41 Confidence: MEDIUM] >NC_013894 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 247015 29 100.0 36 TACTACCATC ............................. AATCTGAAAGCTTCACACCTACCACCGTAGTAGCTC 247080 29 100.0 38 GTAGTAGCTC ............................. TATACTTGGTGAAACTTCCACCACCAGCTTCAAAGCTA 247147 29 100.0 39 TTCAAAGCTA ............................. CCTAAAAAGAAGGTGGGAATACGTTCAGGAAGGTGCTTC 247215 29 100.0 38 AAGGTGCTTC ............................. TGAAAATGTACTGCGTGGTTCTTGGAATCCTTCTGGAG 247282 29 100.0 37 CCTTCTGGAG ............................. AACTGTGCAACAAATTGCGTTGCTTTTTCTTGCGATA 247348 29 100.0 40 TCTTGCGATA ............................. AAGGTCTTGACTTCTACGTCCTCACCGCCCACTCCCACCG 247417 29 100.0 40 ACTCCCACCG ............................. GATAAAGGTGGAGAGAATGTTTAACCTGCTGTCTATGTCG 247486 29 100.0 36 GTCTATGTCG ............................. GTGGATGTTGCAATTGAGGTGGGTAGAAGGTTTGTA 247551 29 100.0 38 AAGGTTTGTA ............................. CGCTTACGCATGGCTAATGCGAATTTGTCCGCTTACGC 247618 29 100.0 CCGCTTACGC ............................. TCAGGTGCGGT ========== ====== ====== ====== ========== ============================= 10 29 38 GTTTCTAATGTACCGTGTGGAGTTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.62%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.70,-0.40] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [665,2713] Score: 0.18/0.18 # # Final direction: F [0.27,0.18 Confidence: LOW] >NC_013894 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 246542 29 100.0 37 ATGAGTTGGG ............................. TTTACTAAATGGGCACTCTGCACAATACTGTGCAGGG 246608 29 100.0 38 CTGTGCAGGG ............................. AGCTGTCAGGTCTTGTATAAAGGTATTCACGCATTTTT 246675 29 100.0 38 ACGCATTTTT ............................. GTGATGTTTTTACTTGCAAGGTTTATCGTGTGTGGCGT 246742 29 100.0 40 TGTGTGGCGT ............................. TTTCTTTATCGTAAGGATACTTATTGACAAACTTAAGCAC 246811 29 100.0 37 ACTTAAGCAC ............................. CTTCCGTCCTTGCATTATAAATTGCAACTTTGAACCT 246877 29 100.0 CTTTGAACCT ............................. TGATCTTGGA ========== ====== ====== ====== ========== ============================= 6 29 38 GTTTCTAATGTACCGTGTGGAGTTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.62%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.70,-0.40] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [192,3454] Score: 0.18/0.18 # # Final direction: R [0,0.18 Confidence: MEDIUM] >NC_013894 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 247760 29 100.0 36 TTTTCTTATG ............................. GTAAAAGCGTTAAGGCTACTATTCTTGCCATAGTCC 247825 29 100.0 37 GCCATAGTCC ............................. TGAAGGAAAAACTTCTGAGCCACTTTCTAAGAAGCAT 247891 29 100.0 38 TAAGAAGCAT ............................. GAGGGAGCAAAGATGAGGAAGTTGATGGTAGCTATCTT 247958 29 100.0 37 TAGCTATCTT ............................. TTCACAGTGAGCATTCCTAAGGAGAGACAGGACAGGA 248024 29 100.0 37 CAGGACAGGA ............................. GAAGGTGTGGTAAATGAAGTCTGTCCAGCGTTGAAGA 248090 29 100.0 37 GCGTTGAAGA ............................. GATAGAACATTAGAGGATAGGATCAACAGAATGGTGA 248156 29 100.0 39 AGAATGGTGA ............................. GTGATCTTTCCACCCAAGAGCTTTAAGAACATCAATCCT 248224 29 100.0 37 CATCAATCCT ............................. GTAGAGAGCTACGAGGAGCTTCTCAATGCAGTGGTAA 248290 29 100.0 GCAGTGGTAA ............................. TACAGTGAAT ========== ====== ====== ====== ========== ============================= 9 29 37 GTTTCTAATGTACCGTGTGGAGTTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.62%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.70,-0.40] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [1410,2041] Score: 0/0.18 # # Final direction: NA [0,0 Confidence: NA] >NC_013894 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 248357 29 100.0 46 AGTACGCATA ............................. CAAGACCCTACCATTTTAGCAAAGAAGGGCTCTCTCTTGAGTAATG 248432 29 100.0 38 TTGAGTAATG ............................. AGTAATAGAACCGAGAAATCAAGGAAGGATAAAAGCTT 248499 29 100.0 37 ATAAAAGCTT ............................. TTCTGAACATCCAGAGCTTGCCAAACATCAAAACGAT 248565 29 100.0 36 TCAAAACGAT ............................. CATTAACAGAACCAACGAGATAACCCGCCAGACTCT 248630 29 100.0 37 GCCAGACTCT ............................. GATAGAACATTAGAGGATAGGATCAACAGAATGGTGA 248696 29 100.0 36 AGAATGGTGA ............................. GATTATAAAAAATCCTCTTCAACTCCTTGCGCAAAA 248761 29 100.0 40 TTGCGCAAAA ............................. AAAAGAAAGGGTTAAACTTAATACTCATGGCAGGTGTAGG 248830 29 100.0 37 CAGGTGTAGG ............................. TTGATTGTTCTACATGATGGTCCATCAGTCTTCACCT 248896 29 100.0 42 GTCTTCACCT ............................. CTACTATCGCGTCTACTTTTGCAGATACTTCGCAAGATGCTT 248967 29 100.0 38 CAAGATGCTT ............................. TTTGAGTTACAGAGAAAATCAGAACTTGCAAGAGCTAT 249034 29 100.0 37 CAAGAGCTAT ............................. ATCTGGTTAAAAGATCATGTGCTTCTTGTTCTGTGAT 249100 29 96.6 37 GTTCTGTGAT A............................ CAAAGGCTCTGTGGAAGTCTTCCATCCGCTCCCAATT 249166 29 100.0 40 GCTCCCAATT ............................. CTACCTAAACGGTGCGGTTTCGTGCCGTGCCGCGCTTTTT 249235 29 100.0 39 CGCGCTTTTT ............................. AGCTTGTCAAGGCTTGGCAAAACTACGGTAGGAGGTGCG 249303 29 100.0 43 AGGAGGTGCG ............................. GTGTACTCAATTGGTAGTCTCCTGAATACATTCACTGCAAATG 249375 29 100.0 36 ACTGCAAATG ............................. GATATAGAGAAAGTATGATCTAAATCATAATCAACC 249440 29 100.0 39 ATAATCAACC ............................. ATATGGTTCTTACGGTGTTGGTGTTGCTATACAGACATT 249508 29 100.0 39 TACAGACATT ............................. GTATCTGTTTTCTGTATAGCTCTACTATGTTCTCTGCTG 249576 29 100.0 36 TTCTCTGCTG ............................. TCTTCAGTAACAAACAAGCTATCAGTGTCAACATAT 249641 29 100.0 39 GTCAACATAT ............................. GTTTGTTATCTGCACCTTCCCTACCGCCTGCCCATTAAG 249709 29 100.0 39 GCCCATTAAG ............................. TCATGTGGCTCGCTCCCGACTTAAGAGGCTTACAAAGGT 249777 29 100.0 37 TTACAAAGGT ............................. AGCAACAAATCCGCACACCAGACCAAACACTACAAAT 249843 29 100.0 36 CACTACAAAT ............................. AGCAAGTAAATCATGTGCTTCTTGTTCTGTGATGTC 249908 29 100.0 38 CTGTGATGTC ............................. GATCTACTTAGGCAATGCTTTCTCACTATCCATGCTAC 249975 29 100.0 40 TCCATGCTAC ............................. GATCCTAAGATACTCCAAAACATCCTCGCAAAAGCAGTGA 250044 29 100.0 36 AAAGCAGTGA ............................. AAAGAGCATCAGAGACAGATATGTGAAGAAGTTTGT 250109 29 96.6 38 AGAAGTTTGT ...................A......... CAGAGCACACTCCGTCAAAGCACAGGAAACTTCCCTGA 250176 29 100.0 36 ACTTCCCTGA ............................. GTGGGACCCTACAGGTGGAACTTCTTCAGGATGGGA 250241 29 100.0 37 CAGGATGGGA ............................. CACCGTACCGTTAGGTTAGGAGGAGGAAGGATGGGAG 250307 29 96.6 AGGATGGGAG ............................A GAGAAATAG ========== ====== ====== ====== ========== ============================= 30 29 38 GTTTCTAATGTACCGTGTGGAGTTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.62%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.70,-0.40] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2007,24] Score: 0.18/0.18 # # Final direction: F [0.86,0 Confidence: HIGH] >NC_013894 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 389627 29 100.0 38 ATGAGTTGGG ............................. GGTATTTGCTGGCTGGTCTAAAAGCATGTTTAAAGTCT 389694 29 100.0 37 TTTAAAGTCT ............................. GGTTTTGACTTCATACACTAAGCGCTCGTGGTAATAT 389760 29 100.0 39 GTGGTAATAT ............................. GTCATGCTTTGAAATTTTACTTCTTCCTGCTATAATTGT 389828 29 100.0 46 CTATAATTGT ............................. ATATACTGGTTTAACTCTACAGGTTTTACTGGGCGACCCTTGCTGT 389903 29 100.0 38 CCCTTGCTGT ............................. GTAAACATCTTCTACTATTATTTCCATTCCTGAAGCTA 389970 29 100.0 36 CCTGAAGCTA ............................. TGATATGGGTATATCCCCCCTATACTCAGGAAAATC 390035 29 100.0 37 CAGGAAAATC ............................. GATGGGAACTTTTTTCATTGTGCCATCCTTTACCAGC 390101 29 100.0 37 CTTTACCAGC ............................. GATGGGAACTTTTTTCATTGTGCCATCCTTTACCAGC 390167 29 100.0 35 CTTTACCAGC ............................. GCACATGTGTATAGCCGATAGTGGCTTTCAAGCCC 390231 29 100.0 38 TTTCAAGCCC ............................. GAGGAGTGTCTCCTGGCTCTCGGAAGAGAACGGCTGGA 390298 29 100.0 39 AACGGCTGGA ............................. AAAGAAGTTTGTAAGGAAGAGCTTTCACCTCTTCTTCGC 390366 29 100.0 38 TCTTCTTCGC ............................. CTATAGCGATTTATGTGCTCCTCTGTAAGTTCGTAGAG 390433 29 100.0 41 GTTCGTAGAG ............................. TCATCTATGAGATAGATGGCACTCTCATACACGGACATCTT 390503 29 100.0 37 CGGACATCTT ............................. TGAGGGCGAAGAAGCTCAATCCTGTATTTCCGTAAAA 390569 29 100.0 36 TTCCGTAAAA ............................. GACGGGCGTTCACTGAAAGAGTGTTCTTTTGTGGCT 390634 29 100.0 40 TTTTGTGGCT ............................. TGTTAGCTAAAATGCCTGACCTGTAAATTGCCCTAATTTG 390703 29 100.0 37 CCCTAATTTG ............................. ACTATCTGCTGATAGAGGTAGCATCTAGGGCATACAG 390769 29 100.0 38 GGGCATACAG ............................. TTCATATAAGGATGTGTGCTTCTGTTTGTGATAGGGAC 390836 29 100.0 39 TGATAGGGAC ............................. TTTTGTCCCAGTTGAGAAAAAAATTTTTTTTGTCGGAAA 390904 29 100.0 38 TTGTCGGAAA ............................. ATGTAGTTAACATGCTTGAGATACTCAAAAGCATAGGG 390971 29 100.0 37 AAGCATAGGG ............................. TCTGCTTTCCATTTACGCCCTATATCGTAGTATTCAT 391037 29 100.0 37 TAGTATTCAT ............................. AGACCATTCTTGAGAGAGCAGTAAAGGTAGAAATAGC 391103 29 100.0 39 TAGAAATAGC ............................. ATGGACATCAGGAAAGGTGTCGGCTTTGCTAATGTATGG 391171 29 100.0 43 TAATGTATGG ............................. AATAGTGTGCTTAGGATCCTTGCGGTGGACTCGTGACCCACCG 391243 29 100.0 37 TGACCCACCG ............................. GCTATCTTTTCTATTGTTTCATCCTACCAGTAACGAG 391309 29 100.0 39 CAGTAACGAG ............................. TCTGATACGAGCTGGTCAGCTATCTGATAAGCCATTCTG 391377 29 100.0 38 AGCCATTCTG ............................. TTAGTCAATGAAATGATGACACGGTTGATGAAGTCCTC 391444 29 100.0 39 TGAAGTCCTC ............................. TCTTGGTTCTGTCTGGATAAACCTTTGCTCAAACTCTAT 391512 29 100.0 38 CAAACTCTAT ............................. TTCTCAGCCTGCATAAAGGCTTTGAGGAGAAGCCCGGG 391579 29 100.0 37 GAAGCCCGGG ............................. TTAGGATCTATGCTCATTATCCCAAGCCCCTTGTCAA 391645 29 100.0 37 CCCTTGTCAA ............................. TGTCTTTCAAAGCTTTCCTAAAATCACCACTCTCAAA 391711 29 100.0 39 CACTCTCAAA ............................. TCTTGGTTCTGTCTGGATAAACCTTTGCTCAAACTCTAT 391779 29 100.0 38 CAAACTCTAT ............................. ATGGGGATAGTGCTGACGAGAGGTCTTCCTACGCTGGG 391846 29 100.0 36 CTACGCTGGG ............................. TTCTGTATCTATTTTTTCGTCTGTCCAGTACTCCCG 391911 29 96.6 AGTACTCCCG .........................G... CAGGCTTATG ========== ====== ====== ====== ========== ============================= 35 29 38 GTTTCTAATGTACCGTGTGGAGTTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.62%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.70,-0.40] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [342,44] Score: 0.18/0.18 # # Final direction: F [0.59,0 Confidence: HIGH] >NC_013921 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 759928 30 100.0 37 NNNNNNNNNN .............................. GGTCCTACTGCTTCGATATAGCTATTTCCACTCAGCA 759995 30 100.0 39 NNNNNNNNNN .............................. ACAACATAGTTGGTATAGACAAGATTGCCAAGAACACCC 760064 30 100.0 36 NNNNNNNNNN .............................. GCTGTTCTTTTTCTCCTCAAGCTCTGCAACCTTAAG 760130 30 100.0 35 NNNNNNNNNN .............................. CCGTAAAAGCAGTATTGAGGGCAATTACCAAGGCG 760195 30 100.0 36 NNNNNNNNNN .............................. TGCTTTGAGGGAAGGTCTTAGGAAGATTTCTGCTGT 760261 30 100.0 36 NNNNNNNNNN .............................. CTGTCTTTGTGCAAGATGGGAAATATTCTGTTGGCG 760327 30 100.0 36 NNNNNNNNNN .............................. CCAAAAAAACCTCTATCAAAAGAAATTCTTATTAGA 760393 30 100.0 38 NNNNNNNNNN .............................. GGTAAAACAGTAACATGAGGAACTATATCAACTCTAGA 760461 30 100.0 37 NNNNNNNNNN .............................. GAAATAAGAATATAGAGTTTGTGAAATTTCATAATTT 760528 30 100.0 36 NNNNNNNNNN .............................. TAAGTTTTGGAGGAATTTTTATAATAGTGATAAAAA 760594 30 100.0 38 NNNNNNNNNN .............................. TTGACTTTTGTTTTAGGTGTTATTCTTGGCGTTTCTTT 760662 30 100.0 36 NNNNNNNNNN .............................. TTTTTTTTTCACCCTTTCCCTCGTTTACATAAATAT 760728 30 100.0 36 NNNNNNNNNN .............................. AGGGCTTAAGAGTGCTGTTATGAATCCTGTTTTTGA 760794 30 100.0 38 NNNNNNNNNN .............................. GCGATACTTCTCCGGCATCGAGAAGCCCAGGGATGTAT 760862 30 100.0 39 NNNNNNNNNN .............................. TGCTTTCGATCCTGTTGCTGAAGCTGAAGAGATATTGAA 760931 30 100.0 35 NNNNNNNNNN .............................. AAAATAGGCGTTTGGTTAGTTCTTTGGGTATTCTT 760996 30 100.0 37 NNNNNNNNNN .............................. ACTCTAGACTTAGAAGAAGGATCATAGTAAACATTTT 761063 30 100.0 37 NNNNNNNNNN .............................. AACTGGGGAAGTCTTTAATGAACCTGTGCAGGAATAT 761130 30 100.0 36 NNNNNNNNNN .............................. AAAGAAAAGCAGCTTTCTAACACAACAGTTAACTAT 761196 30 100.0 36 NNNNNNNNNN .............................. GTTATAGAGGAGGTTGTCCAATTATGAAGAACGATA 761262 30 100.0 36 NNNNNNNNNN .............................. TTCTAAAACATCCTTTCTATAACTTTCTAATTATAT 761328 30 100.0 35 NNNNNNNNNN .............................. ATTTCACAATTTGATAATTTACTTACTTCTGTGAA 761393 30 100.0 38 NNNNNNNNNN .............................. TAACATAAAAATCCTTTCATATTAAACAAAAATAAACT 761461 30 100.0 38 NNNNNNNNNN .............................. CAATTTTCTAAAATCTTCCCATTCCATTTGAATTCCTC 761529 30 100.0 41 NNNNNNNNNN .............................. ATCTCTGAAATACCCTACCTTGTCTATCGGCTATCCAGTAG 761600 30 100.0 36 NNNNNNNNNN .............................. TTATTGGGTTTAAGCATGCTTGTACGAATAAGTGCC 761666 30 100.0 36 NNNNNNNNNN .............................. TGTTATTGGTGATAATGTCGTTTTAGATGTGCGTAT 761732 30 100.0 38 NNNNNNNNNN .............................. CTCCCCCACAGCTTGAGGCTGATGATGTGGAAATAGAG 761800 30 100.0 35 NNNNNNNNNN .............................. ATGACTACTGTTGATTGGGCTGGTCTTTTTTCTGG 761865 30 100.0 38 NNNNNNNNNN .............................. CTTTTAAGGTTGCACTTTATAATCCTGTCTCTAATCAA 761933 30 100.0 36 NNNNNNNNNN .............................. TTTTCTTTTCCACACCTCTAAGAATACCCAAAGAAC 761999 30 100.0 35 NNNNNNNNNN .............................. ACAAAGAGCTAACAAAGAGCTAACAACTATCAAGA 762064 30 100.0 35 NNNNNNNNNN .............................. GTAAAAGCCCTTTGGGGCTTTTACTACTATTATGG 762129 30 100.0 37 NNNNNNNNNN .............................. TCCTATATATAGGCTTAGAAGTCTTGATGAAGTTTTA 762196 30 100.0 35 NNNNNNNNNN .............................. CTGAAATTGTTGAAGAATATCCTGAGCTGGTTGCC 762261 30 100.0 35 NNNNNNNNNN .............................. TGGGAAAAAGTATTAAGAGCAGTACTTCCTGAAGC 762326 30 100.0 37 NNNNNNNNNN .............................. TCTTCAAACCAATAGTCCACTTTATCTTTCACAAAAT 762393 30 100.0 36 NNNNNNNNNN .............................. AGTAAAAATACCTTAAAGAAAATTTACTCTATAAAA 762459 30 100.0 36 NNNNNNNNNN .............................. TGCTTTGCAATTTGTATTTCCATGTCGTTCACCTTC 762525 30 100.0 37 NNNNNNNNNN .............................. GGGTTTAATAATGCTTCCTCAATTTTTTCTGGGGTGA 762592 30 100.0 37 NNNNNNNNNN .............................. AAAAGTCCTTCCTCATTTTGTCTGTAATAATTTTGAT 762659 30 100.0 36 NNNNNNNNNN .............................. CGAGCGCAACGATAAACTTAGAATACCGCATGTTAT 762725 30 100.0 38 NNNNNNNNNN .............................. TTGACTACTGCTTCTTTTTGTTCAGCTATCTCTTTTTC 762793 30 100.0 37 NNNNNNNNNN .............................. ACAGGCCACCAACTCCGAATGGTGGCAAGGATGAAGG 762860 30 100.0 36 NNNNNNNNNN .............................. CTGACCTGCAACAGTTGTCCATGTTGGAGCTGTATC 762926 30 100.0 37 NNNNNNNNNN .............................. CGCTCGGCGAGCTCCTGGAGCATCTCCCACTCGGTAG 762993 30 100.0 38 NNNNNNNNNN .............................. AACTGCTGGGCCAGTCCTTCCTCGGCCTCGATTTGCTT 763061 30 100.0 39 NNNNNNNNNN .............................. TAGGATACATTGTTGGAGTAGCTGATAGGTGGCCACTTC 763130 30 100.0 36 NNNNNNNNNN .............................. GAACAAGGAATTTATACTCCAGCAACGGAGGTTCAT 763196 30 100.0 36 NNNNNNNNNN .............................. CCGCTTACGACGGTTTAATTTACTTAACGAAGTCTA 763262 30 100.0 36 NNNNNNNNNN .............................. TAGGTGAAGTACCAACCATAATTAATTGAGAATGCT 763328 30 100.0 37 NNNNNNNNNN .............................. TTCGCACTTCTTTTGTGTCTCTCAATGGTTCTGTTGC 763395 30 100.0 37 NNNNNNNNNN .............................. CAGCTCAAAGCTAAACTGCTGAAGGTGGTGTAAATGT 763462 30 100.0 37 NNNNNNNNNN .............................. TGTTAGAGAGCGCCGCTTTCAATCCTGTTACTGCTTC 763529 30 100.0 36 NNNNNNNNNN .............................. TTTCTATGTGGTTTTCTATCTTTTCATTTAGTTCTG 763595 30 100.0 1 NNNNNNNNNN .................CCT...AAT.GTG NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 56 30 36 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-1.30,-1.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [335,87] Score: 0.18/0.18 # # Final direction: F [5.86,0.37 Confidence: HIGH] >NC_013921 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1389801 29 100.0 37 TTTGAGAGAC ............................. ACTGCCGGTGGGCTTCGTCCGCCTTGCTCGGGGCGTC 1389867 29 100.0 39 TCGGGGCGTC ............................. TTATTGACCATTTTATTTTCCCATTTTCACTTAAAACGT 1389935 29 100.0 38 CTTAAAACGT ............................. TTAACTTTTGCGTTGTAGCTTATTCCTTTTAGGCTATC 1390002 29 100.0 38 TTAGGCTATC ............................. GGGTCGCTCCAAAGTCTCAACTGTGCTGCTGTTCCTGC 1390069 29 100.0 37 CTGTTCCTGC ............................. CCGTTGGAGGATGATGATGCAGGAGAAAGGTCCAAGC 1390135 29 100.0 39 AGGTCCAAGC ............................. CGACCATATCAGCGGTGCTCCCCATCTCCTGCTGAATCC 1390203 29 100.0 37 TGCTGAATCC ............................. GCAACGAGCCTGTCTCTATTCAGGCAGGACAGACGGC 1390269 29 100.0 37 GACAGACGGC ............................. TAGGTAATAGGTACAAATTTAGGATTGTCCATTTCCC 1390335 29 100.0 39 TCCATTTCCC ............................. TGTTGCCCTGCGCTTGCCATCGTCAGCGCCGATTTTGCC 1390403 29 100.0 38 CGATTTTGCC ............................. TGATTACGACAGCGGGAACGGTCCGGGAATGTATTTAC 1390470 29 100.0 39 ATGTATTTAC ............................. ATGTGTATTAAAAGTGTATTAAAGTGTATCGGAAACAAC 1390538 29 100.0 37 CGGAAACAAC ............................. AATTCGTTCCGAGCGCGGCCGGGAGGCCAGCATCAAC 1390604 29 100.0 38 CAGCATCAAC ............................. GCTGCACATTGGCCTATAATGTTGGTTGCTCTTGCGGC 1390671 29 100.0 38 CTCTTGCGGC ............................. TGGATAATGAATGGCTAGAATGGGCCAGAGACAATAGC 1390738 29 100.0 39 AGACAATAGC ............................. TCAGGCCTTCCTTTAGAGCAGTACATCCATCAAAAAGAC 1390806 29 100.0 37 TCAAAAAGAC ............................. GATTTCTCATGATAGCTTCAAAATTTGTCCAAAATAC 1390872 29 100.0 37 TCCAAAATAC ............................. TCGGTAAAAAATTTCGTGTCCCTGTGGACTTTGGCAG 1390938 29 100.0 37 ACTTTGGCAG ............................. CTTTAAATTTGGTATGGAATTTGAAGAATTTGTTGTG 1391004 29 100.0 38 ATTTGTTGTG ............................. TCTCCACGTCTTGCACCTGTTTCTAAAGCTAGAAGAAG 1391071 29 100.0 38 CTAGAAGAAG ............................. CTACTACAATAGAACAGATATTTTTTGATGTAGATGTG 1391138 29 100.0 37 TGTAGATGTG ............................. CAGCGCCTAAAGCATTTTTTGACTACACGGGTGCTCG 1391204 29 100.0 38 CGGGTGCTCG ............................. ACATTGGCAGGAATCAATCCTTTTTCCGCCAATTTCAG 1391271 29 100.0 40 CCAATTTCAG ............................. TGATATTGATGGCACAAACTTTTACATAAAGCTCAAAATG 1391340 29 100.0 37 GCTCAAAATG ............................. CAAATGAGTTACAAAAGGCTTTTCCAAATCTCACGTG 1391406 29 100.0 37 ATCTCACGTG ............................. GCTCCCTTTCAGCTTTCTTCCTATTCTTACTAAACTG 1391472 29 100.0 38 TACTAAACTG ............................. CTGAAGGAGTATGGGTAAAGAGTGGACACTGGGAATAG 1391539 29 100.0 39 CTGGGAATAG ............................. TCCTGAGTCTCCTGTTGTGCATTCGCCGATTGGCGATGG 1391607 29 100.0 35 TTGGCGATGG ............................. AAGCAGGATAATCAGCAAGATTAACAGTTGCACTA 1391671 29 100.0 AGTTGCACTA ............................. CCATTATAAT ========== ====== ====== ====== ========== ============================= 29 29 37 ACTATTTTCAGGATAGGTAGGCTAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.52%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [65.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [88,199] Score: 0.18/0.18 # # Final direction: R [0,0.45 Confidence: MEDIUM] >NC_013921 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2331054 30 100.0 37 CCGCTGATAA .............................. CCCAATCCGAAATTAGAGGTAGGAGAAATGCAGGAGT 2331121 30 100.0 40 ATGCAGGAGT .............................. CAAGTATGCCATTTGTACCAGCCCTAACACTGCCTATAAT 2331191 30 100.0 36 TGCCTATAAT .............................. AGACCCGGTAGTGGCAAGCTATACTCAGCAGCAGGG 2331257 30 100.0 AGCAGCAGGG .............................. CATCATTGAGCCGATTTTTGAGTCTCGGTTTATTTA ========== ====== ====== ====== ========== ============================== 4 30 37 GTTTCAATTCCTCATAGGTAGGCTAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [51.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [932,325] Score: 0.18/0.18 # # Final direction: R [0.18,5.14 Confidence: HIGH] >NC_013923 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 149125 29 100.0 36 NNNNNNNNNN ............................. GCTTGTAGTAGCGACGGTAGAACTTCGTCGCGAGGC 149190 29 100.0 35 NNNNNNNNNN ............................. GGGGCGTCGCAAGCGTTGTCCGACCGTCGGGAACG 149254 29 100.0 36 NNNNNNNNNN ............................. GTTGGTCGGTGGCGTCAGTCATGCTGTGCCCTCCTG 149319 29 100.0 35 NNNNNNNNNN ............................. GCTCACGACGGAGACCGGCGTGCTCCGGGTGTCTC 149383 29 100.0 37 NNNNNNNNNN ............................. GTCAATGTCGAGGTCGCGCGCCTGGAGCGTCCGGCTC 149449 29 100.0 37 NNNNNNNNNN ............................. GATAGGATACGTTTACTCGCTGGTTTCTCGTCTTCGC 149515 29 100.0 36 NNNNNNNNNN ............................. GTGGGACTGCTCGCACTCCCTGAAAGAGGACTCGGT 149580 29 100.0 36 NNNNNNNNNN ............................. GTGGGACTGCTCGCACTCCCTGAAAGAGGACTCGGT 149645 29 100.0 34 NNNNNNNNNN ............................. GTGATATACCGTTCCCTGTGTTGCAAAACGCGAC 149708 29 100.0 35 NNNNNNNNNN ............................. GAACCAAGCTGTTGACGAAGCCGACGGCGACCTAA 149772 29 100.0 36 NNNNNNNNNN ............................. TCTGAGACACAGTATCAGGTGGACACGGTGGCGGGA 149837 29 100.0 37 NNNNNNNNNN ............................. TCGCAGACGGATTGGCGTTACGACACCAGGGACCCTG 149903 29 100.0 37 NNNNNNNNNN ............................. CGAGCTAACCGAGGAGGACTACGCCGACCTCAAGGTG 149969 29 100.0 1 NNNNNNNNNN ..............A.AC..CCAACAGT. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 14 29 35 GTTTCAGACGAACCTTTGTAGGGTTGAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.17%AT] # Reference repeat match suggestion: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 90% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-2.60,-1.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [331,464] Score: 0/0.18 # # Final direction: F [1.28,0 Confidence: HIGH] >NC_013921 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2332983 30 100.0 35 AGGCAGCGGT .............................. GAAGATGCAATAAGAGTAGCAGATAAAATGCTGAA 2333048 30 100.0 36 AAATGCTGAA .............................. TTTTGTTCATGCTGCGCTAAGATGTTTACAGCTTGT 2333114 30 100.0 36 TACAGCTTGT .............................. AAGTGGCAGATAAACTTCAGAACATGGGTGTAAATG 2333180 30 100.0 37 GGTGTAAATG .............................. CTATATGTCCATAATAACTCCGACTTATCCCAACTGC 2333247 30 100.0 38 TCCCAACTGC .............................. CCAATGTAATTTGTTCAATGCTCTGATAAGTACGTTAA 2333315 30 100.0 38 AGTACGTTAA .............................. CATAATGTAGCTTCTGATTATATTATAATGCTACTTTA 2333383 30 100.0 36 TGCTACTTTA .............................. TATGGGCTCTTCATGGCTAATCACTCTTTTCGTCCA 2333449 30 100.0 36 TTTTCGTCCA .............................. CAAGGACGGGCAAAGGACAGCTGAACGTTGGGAACC 2333515 30 100.0 35 GTTGGGAACC .............................. CCTATAGGTGTAGCGCTTTGGAGATGGCAGGAATC 2333580 30 100.0 37 GGCAGGAATC .............................. TTCAGTGGTTCATATATAATTATACCACATTTGCGCA 2333647 30 100.0 37 CATTTGCGCA .............................. TTGTTAGCATAATTAAAGAGGCGATTACGCCTCCCAT 2333714 30 100.0 35 CGCCTCCCAT .............................. TATTCAACGAAATTCTTACCTACTCCATTTATCCA 2333779 30 100.0 36 CATTTATCCA .............................. GTTGTCCAGTCTGTTTTAGGTGTTTGCCATGCCATA 2333845 30 100.0 36 CCATGCCATA .............................. CATAAATATCGCATGTTTTAGACTCTCTGGTATTTG 2333911 30 100.0 36 CTGGTATTTG .............................. ATACCTGAACCATCATAAACTAATTCCTTATCAGAA 2333977 30 100.0 36 CTTATCAGAA .............................. AATATCTCTTCAGCTTCAGCAACAGGATCGAAAGCA 2334043 30 100.0 37 ATCGAAAGCA .............................. CCATTTGATTGGTCTGTTTTTGATGGTCTTAAGTCTA 2334110 30 100.0 35 CTTAAGTCTA .............................. TCTTTCCTATTCTGTTTTAATACTATAGAACTAAT 2334175 30 100.0 TAGAACTAAT .............................. CATTATAACG ========== ====== ====== ====== ========== ============================== 19 30 36 GTTTCAATTCCTCATAGGTAGGCTAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [51.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [154,183] Score: 0/0.18 # # Final direction: R [0,5.14 Confidence: HIGH] >NC_013922 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1647603 30 100.0 37 NNNNNNNNNN .............................. GAGGATATCCGAATCGATCACGAAGGAACCGAGTACA 1647670 30 100.0 36 NNNNNNNNNN .............................. GTCCGTAGCCGTTCGGAAGGACGACGAGGGCCAGGA 1647736 30 100.0 35 NNNNNNNNNN .............................. TTCCGTGTCAACGTCGTCGTCATCGTCGTCATCGT 1647801 30 100.0 37 NNNNNNNNNN .............................. CTGGTACGACATGAACTCTTGCACCAGACTCGTGTTC 1647868 30 100.0 37 NNNNNNNNNN .............................. TCCGTTCGAAGTGCGGAACGAGAGCTGGTCCATCATC 1647935 30 100.0 37 NNNNNNNNNN .............................. CCTCTGAGCCAACTCAAATCACCGATCCCGAAGAAAT 1648002 30 100.0 35 NNNNNNNNNN .............................. TTCCGCTCTGAGGACCTGTGGGGGCTCCTGTACGT 1648067 30 100.0 38 NNNNNNNNNN .............................. CGTCTTCGACGCCGATGAATCCAGGCCCGTCTAAGTGG 1648135 30 100.0 35 NNNNNNNNNN .............................. GCGGCTGACAGCGACGAGTACATCACGCACACGTT 1648200 30 100.0 34 NNNNNNNNNN .............................. GTCGTGCTCGCGGCGAGCGCGATCTCGGTCGGCG 1648264 30 100.0 35 NNNNNNNNNN .............................. GCAATCTTCGCTGCCCTTGCAGTCTACACCCGCAC 1648329 30 100.0 36 NNNNNNNNNN ......................C.C..... GTCAGTCTCGTGTAGGTGTCGCAGGACGCGCAGCGG 1648395 30 100.0 38 NNNNNNNNNN T..T...............T..C....... ACGATGACAGACAACGACGAGAAAGTTAAATTCAGCCA 1648463 30 100.0 36 NNNNNNNNNN ..C...................C....... CGGATCTGTTCCTCTTGCTCGCTACTGAACGCGTTT 1648529 30 100.0 37 NNNNNNNNNN ......................C.C..... GAGCAGGACCGTCGCGGCACCGAGATCAATATGCACG 1648596 30 100.0 36 NNNNNNNNNN .......T.T.........A..C.C..... CACTCGGTCCGTCCTTCCGATGGCTTCCGAACTCCA 1648662 30 100.0 35 NNNNNNNNNN ...T......C........A..C.C..... ATCCTCTACGACGGCCTCCCACCGAAGATCATCCT 1648727 30 100.0 34 NNNNNNNNNN .......T...........A..C.C..... TTCAAATCGGAGAACGCCGTCTACGACGTTGAGG 1648791 30 100.0 36 NNNNNNNNNN .......T...........A..C.C..... CACGGGTACCGTGTGCGTGACGAAGCGAAGGAAACG 1648857 30 100.0 36 NNNNNNNNNN .......T...........A..C.C..... CTTCGTTTCCGGCCCGGCCACCGCTTCGGCTTCCCC 1648923 30 100.0 35 NNNNNNNNNN .......T...........A..C.C..... CTCCCGCCGCTGGCGATCATCGTTGCGTTGCTCCG 1648988 30 100.0 36 NNNNNNNNNN .......T...........A..C.C..... GCCCGCGTCGGCACTGCCGAGATCATCGACGACAGG 1649054 30 100.0 37 NNNNNNNNNN T.C....T......T....A..C.C..... GTCCCACCCGATTCGTTCCCAATAGAACAAATGGCCC 1649121 30 100.0 35 NNNNNNNNNN .......T...........A..C.C..... AACAAGGCCGTCTTCGTGGTCGGACGCTCCGGTGT 1649186 30 100.0 37 NNNNNNNNNN .......T...........A..C.C..... ATCGCGTGTGAGCGCGTCTCCCTCGTCTGTTCGGACC 1649253 30 100.0 36 NNNNNNNNNN .......T...........A..C.C..... AGACGCAACTCGACGGCACCACGCGGACGACGCCGG 1649319 30 100.0 36 NNNNNNNNNN T......T...........A..C....... AGATCAAACTCAACCTCGACCTCGCCGCCAGTGTCA 1649385 30 100.0 1 NNNNNNNNNN ...T......C...........C......T NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 28 30 36 GTTCCAGAACTACCCTTGTGGGATTGAAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [7,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [95,40] Score: 0.18/0.18 # # Final direction: F [0.96,0.37 Confidence: MEDIUM] >NC_013926 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 977787 29 100.0 37 TAACAGAAGT ............................. TGATTGAAAATGATATATGTTTGAGGTGAGAAAAATG 977853 29 100.0 38 GAGAAAAATG ............................. GGAGTTTGGGATGAAATAAATAAAAAAGTGGAGAATAG 977920 29 100.0 36 TGGAGAATAG ............................. GTAATCTACAAAAAGATAAACAATAAATTCGTATTG 977985 29 100.0 37 ATTCGTATTG ............................. TGATTGAAAATGATATATGTTTGAGGTGAGAAAAATG 978051 29 100.0 37 GAGAAAAATG ............................. AGATATGGCAAAGGAAATAAGCAAAGTTATTGAAATT 978117 29 100.0 37 TATTGAAATT ............................. CTTAACTGATGAAAACATAGATAAAATCGTTGGAAAC 978183 29 100.0 39 CGTTGGAAAC ............................. TATCTACAATGAAGATACTGATGAGCTTGTTGCAATTAT 978251 29 100.0 TTGCAATTAT ............................. CAAGATTAACA ========== ====== ====== ====== ========== ============================= 8 29 37 GTTTCCACACCACATGGTACTTCTTCTAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.17%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.50,-2.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [65.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [138,268] Score: 0/0.18 # # Final direction: R [0,0.64 Confidence: HIGH] >NC_013941 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 3436173 31 100.0 30 NNNNNNNNNN C.................AT........... AGCGGCACGCTGGATTGAACAAATCCCTGG 3436234 31 100.0 30 NNNNNNNNNN ............................... TTTATACACGGATCCTGTGTGCCGTGGACC 3436295 31 100.0 30 NNNNNNNNNN ............................... CACAAACCGCCCATCTTCCCGATTACTGCA 3436356 31 100.0 1 NNNNNNNNNN ............................... NNNNNNNNNN ========== ====== ====== ====== ========== =============================== 4 31 30 GCCGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [45.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [81,98] Score: 0/0.18 # # Final direction: R [0,1.92 Confidence: HIGH] >NC_013941 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 3462080 30 100.0 31 NNNNNNNNNN .T...........A................ CTCGACTTTAATTTTTTCGCTGCCCGCTTTT 3462141 30 100.0 31 NNNNNNNNNN .............................. TTGATAGTTCGCACGATATTCAATCGGAACA 3462202 30 100.0 31 NNNNNNNNNN .............................. GTATTACTGACCAATTTCAGGAAGTCTGTGA 3462263 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 4 30 31 GCGGTTTATCCCCGCTGGCGCGGGGAACTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,6] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [637,341] Score: 0/0.18 # # Final direction: R [0,1.65 Confidence: HIGH] >NC_013926 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 983098 29 100.0 40 NNNNNNNNNN T..CA..A....TTC...T.......... AGGCTGACATCCAGCACTTTTGGGATTATGCGCAGGGGGT 983167 29 100.0 37 NNNNNNNNNN ............................. GGGAGCAAGAAGATTATGACGGGAGGATGATAAGGAT 983233 29 100.0 36 NNNNNNNNNN ............................. TCTAAAGCAGAAAATTACAGCAATTCTTGATTCATT 983298 29 100.0 43 NNNNNNNNNN ............................. GAAATAAAGAAATACTACGGACTCAAAGGCTACAATAGCCCAG 983370 29 100.0 37 NNNNNNNNNN ............................. ACTACGATTTACTCAGGGAATTTATGGGAAATATACG 983436 29 100.0 38 NNNNNNNNNN ............................. ATAGAATAACAAAATACATATCAAAGCACAAGGAATTA 983503 29 100.0 37 NNNNNNNNNN ............................. ATAAACGAAAATAGTGAATCTTCATGGGAAGATAGAT 983569 29 100.0 40 NNNNNNNNNN ............................. TAGATAGACAAATGTTTAATATGTTGTTATCAGATATAAT 983638 29 100.0 40 NNNNNNNNNN ............................. TAGATAGACAAATGTTTAATATGTTGTTATCAGATATAAT 983707 29 100.0 37 NNNNNNNNNN ............................. GGATATATAACAAAAAAGGATGGCTATAACATATCAG 983773 29 100.0 40 NNNNNNNNNN ............................. GAATACAGTCTAATAAACAATGTATTAAAAGAGTTTTATC 983842 29 100.0 42 NNNNNNNNNN ............................. TGGAATGAAAGAGGAAGCGGTTAAAACCGCAATTGAGATTTT 983913 29 100.0 37 NNNNNNNNNN ............................. AGAATATAATCAGGCGTTAAAAGAATACGAGGATATG 983979 29 100.0 35 NNNNNNNNNN ............................. CGTGAGGGACAAGAGAGCGACCGCAAGAGCAATAG 984043 29 100.0 32 NNNNNNNNNN ............................. TAGCGTGGGCGTATTGGATGAGATATTGAATA 984104 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 16 29 38 GTTTCCACACCACATGGTACTTCTTCTAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.17%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.50,-2.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [63.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [44,387] Score: 0.18/0.18 # # Final direction: R [0,1.23 Confidence: HIGH] >NC_013928 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 644279 28 100.0 33 ATCTTTTAGT ............................ TGGGTCTGACACCCAGTCACCCAAAGCTTTGAG 644340 28 100.0 33 AAGCTTTGAG ............................ TAGTTCAACCGCTTATCTTTACAGCAAAGAAAA 644401 28 100.0 33 GCAAAGAAAA ............................ TGCTTGGAAAGATTGACCACACAGGGTCAGGCG 644462 28 100.0 33 GGGTCAGGCG ............................ TACTTGACAGCGCAGTGCGCGCTGTTGAATAGC 644523 28 100.0 33 GTTGAATAGC ............................ CAGCTCCAACAGCTACAACAGCTACAACAGCTA 644584 28 100.0 33 ACAACAGCTA ............................ TGGTAAGGAGGTGCGATTATATGCAAGAGTTAG 644645 28 100.0 33 CAAGAGTTAG ............................ TCATGCGCCAGTATATTATCAGGTCGTGGAATA 644706 28 100.0 33 TCGTGGAATA ............................ TAAAATATACTTCTTTTGTGAAAGGGTTGAGAT 644767 28 100.0 34 GGGTTGAGAT ............................ TTTGATTTTCATTATCGCGGTCTGATGGCTTAAA 644829 28 100.0 33 ATGGCTTAAA ............................ CCGGCTGACAAGCCTAAAATTGTTAATGTTTTC 644890 28 100.0 33 TAATGTTTTC ............................ TAACTCGCTAGCTTTTTTAGATACATAGCTCTT 644951 28 100.0 33 CATAGCTCTT ............................ TTACTGGAGACTCCGCTTATCCCTTTTTTGATG 645012 28 100.0 33 TTTTTTGATG ............................ TAGTTTTCGTGCGATTGCTTCCAAAATTTGAAA 645073 28 100.0 33 AAATTTGAAA ............................ CATATACGACAGTCTGAAAGAAGGCTACCGCGG 645134 28 100.0 33 GCTACCGCGG ............................ TGACCTCAGTTGCTATCCTCTTTTTTATTGTTG 645195 28 100.0 33 TTTATTGTTG ............................ TGACGGCAACGATAGCCCTGAGACTGACAATCG 645256 28 100.0 33 CTGACAATCG ............................ TGTTTTCCTACCTCTTACCAAGGTTTTTTCTAA 645317 28 96.4 33 TTTTTTCTAA ...................A........ TGCCGTTGGGTCAATGCCGTTAGCTTTTAAAGA 645378 28 100.0 CTTTTAAAGA ............................ CAGTGACAA ========== ====== ====== ====== ========== ============================ 19 28 33 ATTTTACCCGCACGAGCGGGGGTGATCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-9.70,-9.70] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [25,300] Score: 0.18/0.18 # # Final direction: R [0.41,0.55 Confidence: LOW] >NC_013941 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 3462141 31 100.0 30 GCCCGCTTTT ............................... TGATAGTTCGCACGATATTCAATCGGAACA 3462202 31 96.8 30 AATCGGAACA ..............................G TATTACTGACCAATTTCAGGAAGTCTGTGA 3462263 31 100.0 AAGTCTGTGA ............................... CTAAACATAA ========== ====== ====== ====== ========== =============================== 3 31 30 GCGGTTTATCCCCGCTGGCGCGGGGAACTCT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,7] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-14.20,-14.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [48.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [698,340] Score: 0.18/0.18 # # Final direction: R [0.59,1.51 Confidence: MEDIUM] >NC_013928 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 743991 36 100.0 30 NNNNNNNNNN .................................... CAAAAGGGTTTCTAATCCCATTCGAAAGCG 744057 36 100.0 30 NNNNNNNNNN .................................... GATTGTGCCCGCTAGTAAACCGCCTCGCGC 744123 36 100.0 30 NNNNNNNNNN .................................... CCAAGCTATGCAGTCACGCCTGACCCTGTG 744189 36 100.0 30 NNNNNNNNNN .................................... TAGAGTTGAAAAAAACACTACAGGCGAAAA 744255 36 100.0 30 NNNNNNNNNN .................................... TAATACTTCCTCAATTATAAATTCAATTCT 744321 36 100.0 30 NNNNNNNNNN .................................... GATTGTATCAGTAATCGAACTTCTGCTTAT 744387 36 100.0 30 NNNNNNNNNN .................................... GTTGCTTATGCAGATGATAACACAGGCGCA 744453 36 100.0 30 NNNNNNNNNN .................................... TGGTCCAAAGTGCAGAGCCAAAGAAAAACA 744519 36 100.0 30 NNNNNNNNNN .................................... ATTGTCAATCGCCGTTCTGCGCTTGCGACG 744585 36 100.0 30 NNNNNNNNNN .................................... CTCTAGCGCTTATTTCGAGGACAGCGGAGC 744651 36 100.0 30 NNNNNNNNNN .................................... TCATTGCTCTTGACATCAATAACTTTTTCA 744717 36 100.0 30 NNNNNNNNNN .................................... GAGCAAAATCAACTATCTCAAAGCTTAGTT 744783 36 100.0 30 NNNNNNNNNN .................................... TGGCAATTTACCAGCACAGCAATTGCTGGC 744849 36 100.0 30 NNNNNNNNNN .................................... TTCGCGGTCTACTTTTTTTGATATGCTAAT 744915 36 100.0 30 NNNNNNNNNN .................................... AAAGAATAAGTTCTCTCACAATGTTTGAAA 744981 36 100.0 30 NNNNNNNNNN .................................... CAGGTTTCATCTTAGGAAACGTATTGATGA 745047 36 100.0 30 NNNNNNNNNN .................................... GCTTGAATATAATTGTGTATCCGCCAATGA 745113 36 100.0 30 NNNNNNNNNN .................................... ACCTTGTGGTCCGTCTTCTCCGCCACTTTC 745179 36 100.0 30 NNNNNNNNNN .................................... CAAACGGCGGTTTGACTGACTCAGGAATTT 745245 36 100.0 30 NNNNNNNNNN .................................... GATTAAAAACATAGATGAAAACGGCTATTT 745311 36 100.0 30 NNNNNNNNNN .................................... ATCCACAGGCACAGAATTAGTGTTAATCCA 745377 36 100.0 30 NNNNNNNNNN .................................... TTGACCGTGATAAAGTGTTCAACCACACGT 745443 36 100.0 30 NNNNNNNNNN .................................... AAAAAGAAACGCCTTTTGATTTGACCAATC 745509 36 100.0 30 NNNNNNNNNN .................................... CAATGCTAGTTAAGCTCTTGATGCTTTGAG 745575 36 100.0 30 NNNNNNNNNN .................................... CCACTCTTGCTCCTGATTGGTCAAATCAAA 745641 36 100.0 30 NNNNNNNNNN .................................... GTTCCATTGAACGCATTGATGGGAACAACA 745707 36 100.0 30 NNNNNNNNNN .................................... CGTTACTGGTGTTCACGGCGACAGCATGGA 745773 36 100.0 30 NNNNNNNNNN .................................... ATGAAAAGCCTCGTTTCTAAGGCTTTTGGT 745839 36 100.0 30 NNNNNNNNNN .................................... AGTTATTAATATCTATGACAGTCTCAAAGA 745905 36 100.0 30 NNNNNNNNNN .................................... CGGATATAGCCTAGCATATAATCGCGTGTG 745971 36 100.0 30 NNNNNNNNNN .................................... TTCAATCGGTGATGATATTGTCTGCTATCA 746037 36 100.0 30 NNNNNNNNNN .................................... AATGTATGCACCGCGTTTTTTAACAAAATA 746103 36 100.0 30 NNNNNNNNNN .................................... GTTTGCTTTTGTTTTTGCCTTGTGTGTTTC 746169 36 100.0 30 NNNNNNNNNN .................................... ATAAAGACGAATATAAAGACCCGAGCACTT 746235 36 100.0 30 NNNNNNNNNN .................................... TAGACACGGTTGCTAAAACAAAGAAGGTTA 746301 36 100.0 30 NNNNNNNNNN .................................... TAATATTATTGAGCAAAAATCCTTTAACTC 746367 36 100.0 30 NNNNNNNNNN .................................... TTCTGGCTGTCTTTCAGAGTGATAAGCGCA 746433 36 100.0 30 NNNNNNNNNN .................................... GTATCAATACAATCTTAGACGCTCGCACTG 746499 36 100.0 30 NNNNNNNNNN .................................... CGCCGGTTACAACCGGTTGAACGCCTGCGT 746565 36 100.0 30 NNNNNNNNNN .................................... TGCAAGTTATCTTGCTATGTGGACGAATTG 746631 36 100.0 30 NNNNNNNNNN .................................... TGACGGAAACAGAGACGGAACGGCAACTGT 746697 36 100.0 30 NNNNNNNNNN .................................... GCACTACAAGACGGCTATTGCTGATGAAGT 746763 36 100.0 30 NNNNNNNNNN .................................... GCAATTTAGTTTTATTCCGTGGGAGCAGCA 746829 36 100.0 31 NNNNNNNNNN .................................... CGATAAAATTTTGCTAACCCGGAAAGCGGTT 746896 36 100.0 30 NNNNNNNNNN .................................... AATTGTTACTCCCAACTTCAGCATTGACCA 746962 36 100.0 30 NNNNNNNNNN .................................... CTCTGCGCTTTGCACGAGCACAGCGATATC 747028 36 100.0 30 NNNNNNNNNN .................................... TGGCCATGACGATGACGGGACTAAGACTGT 747094 36 100.0 30 NNNNNNNNNN .................................... AGAGTATAGCCAGTGTTTTCAAGGCCTTTA 747160 36 100.0 30 NNNNNNNNNN .................................... CGCAACAATGACTATTAATATCAACGGTGG 747226 36 100.0 30 NNNNNNNNNN .................................... ATCAAATTTCGCTTCTGGAGCAATCTCAAC 747292 36 100.0 30 NNNNNNNNNN .................................... AAGAACTCTTAGAAAATATGGTCCACTCAT 747358 36 100.0 30 NNNNNNNNNN .................................... CAGTATACGCCATATTCCATCAGGATGACT 747424 36 100.0 30 NNNNNNNNNN .................................... CGATAAAGCTACTGTAGCAATTAAAGGCTA 747490 36 100.0 30 NNNNNNNNNN .................................... TTTCTGTTTTAGCTGAGTTAAGTGCCTTCT 747556 36 100.0 30 NNNNNNNNNN .................................... TTAAAAAGCTGACAAAAGACAGCAATGAGA 747622 36 100.0 30 NNNNNNNNNN .................................... AATCGCTTCTTTGCTAACCACAATTTGTGC 747688 36 100.0 30 NNNNNNNNNN .................................... TTAAAAAGCTGACAAAAGACAGCAATGAGA 747754 36 100.0 30 NNNNNNNNNN .................................... TATATGTGATGGCAGTTGAAAACATACGTA 747820 36 100.0 30 NNNNNNNNNN .................................... TTGCAATTGAGGGCAAACGTAGTGAATTGC 747886 36 100.0 30 NNNNNNNNNN .................................... AAATGCTCTTGAAGAACCTGATAGATGACA 747952 36 100.0 30 NNNNNNNNNN .................................... TCAGATAAAGATTTTTTTGGAAAGTACAAT 748018 36 100.0 30 NNNNNNNNNN .................................... TATTAAATTACTTGTAATTACAAAGCCTAA 748084 36 100.0 30 NNNNNNNNNN .................................... ATTAGAGAGCAGATGCAATCACCCGTTATG 748150 36 100.0 30 NNNNNNNNNN .................................... TAGAGCTCTTAGTTTTTTACGCGTTGGGCC 748216 36 100.0 31 NNNNNNNNNN .................................... CAAATTTGCCGGCGGGGTCGGTAAAACGGTC 748283 36 100.0 30 NNNNNNNNNN .................................... TGCAAAAGATGGCCTCGAGCAATTATCGCA 748349 36 100.0 30 NNNNNNNNNN .................................... GAAAAGGAAAATCTTACTTAGCTCATGAGT 748415 36 100.0 30 NNNNNNNNNN .................................... CTGACCAAGAGAATTAATTCTAAAGATAAA 748481 36 100.0 30 NNNNNNNNNN .................................... CTGACCAAGAGAATTAATTCTAAAGATAAA 748547 36 100.0 29 NNNNNNNNNN .................................... GGCACATATAATCCGTAAAGGCGGCACAT 748612 36 100.0 1 NNNNNNNNNN ..........CA....AG..ACTGATT.A.T..... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 71 36 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [155,84] Score: 0/0.18 # # Final direction: F [0.78,0.27 Confidence: MEDIUM] >NC_013930 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 66903 36 100.0 36 NNNNNNNNNN .................................... CGGGGATGCGGCCGCGACCGCCGAGCTTCGGAGATG 66975 36 100.0 37 NNNNNNNNNN .................................... GCAAGCCGTCCTGGAGGAGGTTCGAGCAGTAGGGCCG 67048 36 100.0 36 NNNNNNNNNN .................................... CAAATCGGACGGGAGATCACTCATCTCCGTCTTGTC 67120 36 100.0 35 NNNNNNNNNN .................................... AGCGCCTACACCCGATTCTGGACACCGCGCTCGAC 67191 36 100.0 36 NNNNNNNNNN .................................... CTGGAGGGCGGCGATGAACGAGCCACGGACCCGGCG 67263 36 100.0 38 NNNNNNNNNN ....G............................... CACCGGATAGATCGCCGGGCCGCGCCCGGTCAGGCCTC 67337 36 100.0 39 NNNNNNNNNN ............C...........ACGT.G.T.G.A CCGTGTGATTGTGTATTGGCGAGCCCCGATCCGGGACTC 67412 36 100.0 1 NNNNNNNNNN ............C...A.A.....GTGT.G.T.C.A NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 8 36 36 GTGGAAAGCACGTCCCTGTGGGGGCGTGGTTGGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-15.10,-9.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [192,252] Score: 0/0.18 # # Final direction: F [0.78,0.64 Confidence: LOW] >NC_013939 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 514733 30 93.3 37 ATACAAATAA --............................ CAGAAATAACAGGTTCAATCAAAGTATATGATAGAAA 514800 30 100.0 37 ATGATAGAAA .............................. AGAGTTAATTTTTTGTTGTACTCTTGTTCAAGGTACT 514867 30 100.0 38 TCAAGGTACT .............................. CAATCAAATCAAAAGCTGAGTATGTTGTATCTACTACA 514935 30 100.0 36 ATCTACTACA .............................. ATGTCCCAGGTTTTGTTTATTTGTTAGTGGATAGGA 515001 30 100.0 36 GTGGATAGGA .............................. CAAGTATTGATGCAGTAGCTTGTGAGGTGGGTGATG 515067 30 96.7 36 GTGGGTGATG .........T.................... GCTCCTCAAGACTCATCTTGACAATTTGACGACCAT 515133 30 100.0 39 TGACGACCAT .............................. AAGAGCTTGAGAAGGGACTCGAAAGGTTTCTTGCAGTCA 515202 30 100.0 38 CTTGCAGTCA .............................. GTGAAAATCCATCTCGGGGATAAAGAGGAAATAAAAGA 515270 30 100.0 36 AAATAAAAGA .............................. TATTAAATCGTTTATACTTGATGTTGCAGATGTGCT 515336 30 96.7 38 CAGATGTGCT .............A................ TTTCAAAGAGAATAAAAAGATAATTCTAACTGAAGATG 515404 30 96.7 37 ACTGAAGATG .............A................ AATATTTATATGAAATCATTGAATCAAAAGATAACAA 515471 30 96.7 37 AAGATAACAA .............A................ CTCACTGTGTTTTAGAAATTAGAAGCTTAAAAAATGG 515538 30 100.0 37 TAAAAAATGG .............................. TTTTTATACCATTGATTAGCTCGTTGTTCGATATTGT 515605 30 100.0 37 TCGATATTGT .............................. CCGCTTATCGCTGCAGCTGTCAAAACGGGGAAAGATA 515672 30 100.0 38 GGGAAAGATA .............................. CTCTGCACAAAGCTTGTTATCAGGCTCGGCGAACAGGG 515740 30 100.0 35 GCGAACAGGG .............................. CTATAGCAATTTCATCCTTGTCTTTCATTAGGGAA 515805 30 100.0 36 CATTAGGGAA .............................. AAATATCTAAAGTTACTTTACGAATAGGAAACCATT 515871 30 100.0 37 GGAAACCATT .............................. AAAGAAAACTAATGAAGGGGGTAGTTATGAAATATAA 515938 30 100.0 36 TGAAATATAA .............................. ATATTTATTGCATAAACGAAAATAATGATGGAAATG 516004 30 100.0 35 GATGGAAATG .............................. ATGGGCTTTTGTTGCCATAAAAGCATATCTATTTT 516069 30 100.0 37 TATCTATTTT .............................. CCAACCCTTTTCCATAAATAGTTATATTACAGTCTCT 516136 30 100.0 36 TACAGTCTCT .............................. TACATCAGTTCAATCTCCCGTTGTTTTTCAATTGTT 516202 30 100.0 36 TTCAATTGTT .............................. AGAAAAGATTAATCAATTTGGGGTTACTGTTCAATT 516268 30 100.0 37 CTGTTCAATT .............................. TTTTAAAATTGTATCCACCATATTGGTCTTCAATGGC 516335 30 100.0 37 CTTCAATGGC .............................. TTGAACAAATTCTGCAAGGTTGGTCTGAACAAGATAC 516402 30 100.0 36 AACAAGATAC .............................. GAAAACATTCAGAAATGAACATTGTGAATGGTATTC 516468 30 100.0 37 AATGGTATTC .............................. TTGACATAGAAGTTGAACAAGGAAGTGATACAAGTCT 516535 30 100.0 37 ATACAAGTCT .............................. ATATATAACATCAGAATCTTTAAACCAACGCGGAAAA 516602 30 100.0 37 ACGCGGAAAA .............................. TATATTATATAAAGAAAACAGACCATCCTTGTAGATA 516669 30 100.0 CTTGTAGATA .............................. CCTTATCCCT ========== ====== ====== ====== ========== ============================== 30 30 36 GTTTCAATTCCTCTTAGGCACTCTAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.90,-0.90] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1759,230] Score: 0.18/0.18 # # Final direction: R [0.18,4.91 Confidence: HIGH] >NC_013929 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 5775873 23 100.0 25 NNNNNNNNNN ....................... CTTGGTGGTGATGGTGTCGTCGGCG 5775921 23 100.0 31 NNNNNNNNNN ....................... CTGCGGGGTGGCGAGGCCGCCACCCTCCTTC 5775975 23 100.0 1 NNNNNNNNNN ....................... NNNNNNNNNN ========== ====== ====== ====== ========== ======================= 3 23 28 GGCGGGGCGGGCATGTGGCTGTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [28.3-30.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [121,274] Score: 0.18/0.18 # # Final direction: R [0,0.55 Confidence: HIGH] >NC_013939 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 526662 30 100.0 38 GTAGTTAAAA .............................. GAAAAATTAGGAAAAGCACGCTAAAAAGCGTGCTTTTT 526730 30 100.0 39 CGTGCTTTTT .............................. TTGTCAATCCAAATATTACAGTTGTGCAATTTGCGCAAC 526799 30 100.0 37 TTTGCGCAAC .............................. AATTGTACAAATCTGTAATTTTCTTTTTGTTGTTTAG 526866 30 100.0 37 TGTTGTTTAG .............................. TTGTCAAATAAATAACTAATGTAATTGTGCAAATCTG 526933 30 100.0 38 TGCAAATCTG .............................. AGACTCAACGACGGTTTTATGGAGCATTATAGATGGTT 527001 30 100.0 38 ATAGATGGTT .............................. GATGGTTTGACCTTCAAAACCTTGCGAACGAAATTATT 527069 30 100.0 37 CGAAATTATT .............................. TTCCAAAAAACTTGTGGGGTTGGAAGAAGCAGGAAAA 527136 30 100.0 39 AGCAGGAAAA .............................. TTGCAACCCTTCATGCTTTGAACTTTGTTCAAAGCGAAA 527205 30 100.0 36 CAAAGCGAAA .............................. AAGGGGCTCAAAGCGTGGAATAATAAAAGAGTTTTC 527271 30 100.0 37 AAGAGTTTTC .............................. TAATAGCTCTTCTTGGTCCGCTATTAACAGCAAAGTC 527338 30 100.0 35 CAGCAAAGTC .............................. GAACGCGCTCATATCTATGGACATCTTTTAAACCC 527403 30 100.0 36 TTTTAAACCC .............................. ATTTCTGGACTCTATGGACATAATGGACACTTTTTT 527469 30 100.0 36 ACACTTTTTT .............................. AAAACCCGACGCCATTATTAATGTCATCGGGTTTTC 527535 30 100.0 TCGGGTTTTC .............................. CCCTTATCCC ========== ====== ====== ====== ========== ============================== 14 30 37 GTTTCAATTCCTCATAGGCACTCTAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.90,-0.90] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [584,308] Score: 0/0.18 # # Final direction: R [0,4.5 Confidence: HIGH] >NC_013940 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 77946 30 96.7 36 TAACTTCTGT ............A................. AAAAATCACCATTACATCATTTATTGCTTTTGTAAT 78012 30 100.0 38 CTTTTGTAAT .............................. ACTGATTATTTTGAGATATGGTGGGATGCAGATAAATT 78080 30 100.0 36 CAGATAAATT .............................. AAAGTTTAATAAAAAGGAAAGATGTGTCGGATATAA 78146 30 100.0 35 TCGGATATAA .............................. TGAAATGATGTATTTGATGAAAGTGATACAACGTG 78211 30 100.0 38 ATACAACGTG .............................. GTGCTTAGTAATACTAATACACAAATATTTTTGAAAAC 78279 30 100.0 37 TTTTGAAAAC .............................. AGCTCAACAAAAATAGCATAACTACTAGCTGTAAGCG 78346 30 100.0 GCTGTAAGCG .............................. CCTTATCTCT ========== ====== ====== ====== ========== ============================== 7 30 36 GTTTCAACTCCTGATAGGTACAATATAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [127,234] Score: 0/0.18 # # Final direction: R [0,0.78 Confidence: HIGH] >NC_013940 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 85558 30 100.0 38 NNNNNNNNNN ACC.T.T.....A....A.......C.... AGAACACCTAAAATAATTACCACAACTATAACTTCTGT 85626 30 100.0 37 NNNNNNNNNN .............................. AAATATGGTAAACTAAAAGTTGATGATTACGTATATA 85693 30 100.0 36 NNNNNNNNNN .............................. GATATTCTTTGCAGTATACACCTTTATATTTAAACC 85759 30 100.0 37 NNNNNNNNNN .............................. TTGATAAATCAGTTGGACCAGAAATTAATTTCATTAG 85826 30 100.0 35 NNNNNNNNNN .............................. CTCATCCAATTCCTAAGTGTGAATTTGCTAACCTT 85891 30 100.0 37 NNNNNNNNNN .............................. TAGAAACAAATTTTTTGGAGCATGCTGCAAGAGGTGT 85958 30 100.0 39 NNNNNNNNNN .............................. TTGCACAAGCATATCCTTGCGCATGTACCAAGCCTCTTT 86027 30 100.0 34 NNNNNNNNNN .............................. TGCTTTTGCTGTTGTTTTTGTTGCTGTTGTTTTA 86091 30 100.0 37 NNNNNNNNNN .............................. TAACTATTGATGATATATTCTGTTTTGTTGTGCCTGT 86158 30 100.0 36 NNNNNNNNNN .............................. TTATATTTTTGTATAAATTATATGTATATGCATATT 86224 30 100.0 37 NNNNNNNNNN .............................. GCTTCAGCAATTCCATACTTATCACTTATTTTTATTG 86291 30 100.0 37 NNNNNNNNNN .............................. TGTATTTTTCAAAGTTTTTATCTTTTGTAACAAATTC 86358 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 13 30 36 GTTTCAACTCCTGATAGGTACAATATAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [90.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [180,500] Score: 0.18/0.18 # # Final direction: R [0.27,0.96 Confidence: MEDIUM] >NC_013946 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 11834 35 100.0 40 GGGGTATGCT ................................... GCATCCATCACGCCCAACTTGTTGATTTCGATTTGCACTA 11909 35 100.0 41 ATTTGCACTA ................................... GAATTGCAGGTGAAGCCTGTGTACTTTGGCGACCTTTTGGG 11985 35 100.0 41 ACCTTTTGGG ................................... GATGGTTAGCAGCGCCAGGCGAATATTACACTATGGCACGA 12061 35 100.0 35 TATGGCACGA ................................... GTGGCGTGAACGCGTTTGCACGTGCCCTTGGTTCC 12131 35 100.0 37 CCTTGGTTCC ................................... AGATAACGCAGTTTGCTCTTCATATCTCCTTCCTCCT 12203 35 100.0 CCTTCCTCCT ................................... GCCAGCCCGCCTGCTCGCCGCTTGCTGCTGCCAG ========== ====== ====== ====== ========== =================================== 6 35 38 GTTGCAAACAAAAAGCCCCGTAAGGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.29%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.00,-7.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [414,165] Score: 0.18/0.18 # # Final direction: F [5.32,0 Confidence: HIGH] >NC_013946 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1502600 37 100.0 34 GTGGAAACCC ..................................... CTTATAATAGGTGCATCTTTATGATGATACCAAG 1502671 37 100.0 36 TGATACCAAG ..................................... GAATTCCTCGGCTACCTCGGGAGCCGCAACGCCGGC 1502744 37 100.0 34 CAACGCCGGC ..................................... GGGGCTTGCGGAGGACGGACGCGCTCGCCTTTGT 1502815 37 100.0 37 TCGCCTTTGT ..................................... ATGCGCGTTGTTTCCCGTAATGCGTGAGGTAACGTTG 1502889 37 100.0 35 GGTAACGTTG ..................................... ACACGGGCGAGGCCATGGAAACTGCCCGGGCGATC 1502961 37 100.0 34 CCGGGCGATC ..................................... ATAGAGGCTCTACGAGCAGCGGGCTATACGCATA 1503032 37 100.0 34 TATACGCATA ..................................... TGGCGCTCAAAATTGTCGCTCTGCTGCTCAGCAG 1503103 37 100.0 38 TGCTCAGCAG ..................................... GCGCGGGCACATTGATGTTAGCGGTGAACGGCTGGCTG 1503178 37 100.0 35 CGGCTGGCTG ..................................... GGGGCCTTTTGGGCCCAGCGCTAGTGCCAGAGTAG 1503250 37 100.0 38 GCCAGAGTAG ..................................... ATTGCCGGCAGAAGTAAATGGTATGTATATAGTGTATA 1503325 37 100.0 34 ATAGTGTATA ..................................... AGAGAGTGTCTGCATATTGAGCTACTGCTGCCTC 1503396 37 100.0 35 CTGCTGCCTC ..................................... GTTGCAGGGGATATCCAGGACATTGCAGTTTGTTT 1503468 37 100.0 CAGTTTGTTT ..................................... AGCCTCATTC ========== ====== ====== ====== ========== ===================================== 13 37 35 GTTTCAATCCTCACTCGAGCTATCGCCCGAGTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [8,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.10,-12.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [199,203] Score: 0/0.18 # # Final direction: R [0,5.24 Confidence: HIGH] >NC_013946 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1521736 37 100.0 35 GAATGAGGCT ..................................... GGCGGCCAGGAGGAGGGCCCCGGCGAGCGCTTCAG 1521808 37 100.0 34 AGCGCTTCAG ..................................... GAAGACGGCCCCCGCGACCCCCCCGATGGCCCCC 1521879 37 100.0 37 GATGGCCCCC ..................................... TCGAGAGTGGATGGCCCGCTCGTAGAGCGCTCTAGAG 1521953 37 100.0 34 CGCTCTAGAG ..................................... CTTCATATATTCCTCCCTTCTGGCTATAGAATAG 1522024 37 100.0 37 TATAGAATAG ..................................... CTCAATGACGGACGCAGTGCCGGTTTGGAAGTCAACG 1522098 37 100.0 36 GAAGTCAACG ..................................... CTCGCCCGTGAGGGTGATGGCCCGCAACAACCCCAC 1522171 37 100.0 35 ACAACCCCAC ..................................... GCGTAGGTGCAGGCGGCAATCGCCGCCTCCACCGC 1522243 37 100.0 33 CCTCCACCGC ..................................... GGCGAGGGCTTGAACGAGTTCCTTCATGCGTAC 1522313 37 100.0 35 TCATGCGTAC ..................................... TTCGCGGGCGCCGGCGAGGGCGCCGGCCCCCTGAC 1522385 37 100.0 36 GCCCCCTGAC ..................................... TTCACTAAAAAATTTCCGCAACATAGACCCAACAGT 1522458 37 100.0 34 ACCCAACAGT ..................................... CTCAAAGTTGATGTACACGCGGAAATCTCCTAGG 1522529 37 100.0 ATCTCCTAGG ..................................... TACACCGCA ========== ====== ====== ====== ========== ===================================== 12 37 35 GTTGCACTCGGGCGATAGCTCGAGTGAGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [9,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-12.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [36.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [446,66] Score: 0.18/0.18 # # Final direction: F [5.42,0.27 Confidence: HIGH] >NC_013946 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1692871 28 100.0 47 TCGTTGAAGT ............................ GCGCGAGCTTGGGGAAGTTATGAGGCTTTCATTCATAAGCTGAGCAA 1692946 28 100.0 46 AGCTGAGCAA ............................ CGCGAGCCCTGGGTTAACTGACGGCCAACTCATAGTTCGTTGAAGT 1693020 28 100.0 47 TCGTTGAAGT ............................ GCGCGAGCTTGGGGAAGTTATGAGGCTTTCATTCATAAGCTGAGCAA 1693095 28 100.0 AGCTGAGCAA ............................ CGCGAGCCCTGGATTAGC ========== ====== ====== ====== ========== ============================ 4 28 46 GCCTCGTCTATCGCTCGAGGCCGGTAGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.80,-0.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [132,80] Score: 0/0.18 # # Final direction: NA [0.37,0.37 Confidence: NA] >NC_013946 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2791976 37 100.0 37 GAATGAGGGC ..................................... AAATACTTCTGGGTGCTGGAGTTCCAGTCTCGCGGGG 2792050 37 100.0 34 TCTCGCGGGG ..................................... TGAGGAGGGCTAAAGCTGCACAGATACGTCGGCA 2792121 37 100.0 34 TACGTCGGCA ..................................... CTATACTCATGGCATCTCCTTTCTTGGCCCCGGT 2792192 37 100.0 36 TGGCCCCGGT ..................................... TATTTGTGCTCGATTAGCTCCCGAGTTGTACAGCGT 2792265 37 100.0 35 TGTACAGCGT ..................................... CCAAATCCGGGAGGGGATAGTGAATGCTATCCACT 2792337 37 100.0 34 GCTATCCACT ..................................... GTCAATATTGACAATCGCCCAGGTTTCGTCAATC 2792408 37 100.0 35 TTCGTCAATC ..................................... TGCATGCACACACACGCGGCGGGCTGGCAGCGAGC 2792480 37 100.0 36 GGCAGCGAGC ..................................... GATGAACTGGTGACCCTTGCGCACCGCCGCAAGCAC 2792553 37 100.0 35 CCGCAAGCAC ..................................... GTATAGAAAGACATTGGAGAACTAATAACAGGAAT 2792625 37 100.0 36 TAACAGGAAT ..................................... TTTGTCCGCCCGTCCCGGGCCTGTACCACCTGGAAG 2792698 37 100.0 36 CACCTGGAAG ..................................... GAGAGCCCCGCTAAGGTGCAGGTAGCGGGCCTGCAC 2792771 37 100.0 36 GGGCCTGCAC ..................................... GCGCAGCCGGACGCGCTCGCCCGATTGTGACCCCGG 2792844 37 100.0 36 GTGACCCCGG ..................................... CCGGGCGCGCTTGGCGATTGCCAGGCGCACTCGGGT 2792917 37 100.0 35 GCACTCGGGT ..................................... GTGAAGCTCAAGAGAGCCGGCGACCCGGGTCGCTG 2792989 37 100.0 35 CGGGTCGCTG ..................................... GGCCACATCACTGCCGTCGCCCCAACCCTCAGATT 2793061 37 100.0 37 CCCTCAGATT ..................................... GCAGGCTGGGCTGCCTAGGGCGGCTGGGCTTGCAGGC 2793135 37 100.0 35 GCTTGCAGGC ..................................... TACACGACAGCGTAACTCACTATTACGCCGCCATC 2793207 37 100.0 34 CGCCGCCATC ..................................... GGCATCGAGGGAGTTCAGCTTCCCGCTGAGGTGC 2793278 37 100.0 36 GCTGAGGTGC ..................................... CTACTCTGACACCAGCGCTGGGCCCAAAAGGCCCCG 2793351 37 100.0 35 AAAGGCCCCG ..................................... ACGAGTTAGCGTAGCGGTTGGAGGAACCTCATAGC 2793423 37 100.0 36 ACCTCATAGC ..................................... GCAACCCGACTTCGAGGCGGCGCTGCGGCTGGCGGC 2793496 37 100.0 34 GGCTGGCGGC ..................................... CCGGAGCACGAGCTGCTCGGCATCCCGTACCCGC 2793567 37 100.0 36 CCGTACCCGC ..................................... CTTTGTGCGGATGTTCTCCCACACGGGGCCCTCATC 2793640 37 100.0 34 GGCCCTCATC ..................................... CCGGCATGGAAGGTCTACAAATTGACGGCCCTCG 2793711 37 100.0 35 ACGGCCCTCG ..................................... TTTCCGCAGGCAATGGCCTGGCTAAAAAGTACGAG 2793783 37 100.0 35 AAAGTACGAG ..................................... CTTCCCCCCGGGAAGAAAGCCCCACCCCCAGGGCC 2793855 37 100.0 36 CCCCAGGGCC ..................................... GATTTCCGCACGCCGCAGGAGATTGCGGCAGATGAG 2793928 37 100.0 35 GGCAGATGAG ..................................... CAAAGAATCAAGAGAGCCTCTTTGCGAATCATTTC 2794000 37 100.0 35 GAATCATTTC ..................................... CTGCCTTCTACACGGCTAATGGCCGTGGTAGTGCC 2794072 37 100.0 35 TGGTAGTGCC ..................................... TCAATGAGGCCTGTGTTGTGCACGTGGGAAAAGTC 2794144 37 100.0 35 GGGAAAAGTC ..................................... ATGGTCTTTTGCGCTGCGCACCCCGGCCACCACCG 2794216 37 100.0 36 GCCACCACCG ..................................... CTGGACTTCAGAAATTTATCGACCGCATCAGCATCC 2794289 37 100.0 35 ATCAGCATCC ..................................... ACAGAGGCGCTCACTACAGCAATGTCGAAAATCCC 2794361 37 97.3 37 CGAAAATCCC ..............................C...... GACCTGGCTTGGTCTTAAACCAGGCCTCTCCCTGGGG 2794435 37 94.6 CTCCCTGGGG .........-.....T..................... CATGATTCCT ========== ====== ====== ====== ========== ===================================== 35 37 35 GTTGCACTCGGGCAAAAGCTCGAGTGAGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [11,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-12.10,-8.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [211,2] Score: 0.18/0.18 # # Final direction: F [5.83,0.27 Confidence: HIGH] >NC_013946 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3049068 29 100.0 32 NNNNNNNNNN .C........................... GCGGTGGGCAACGAGCAGGGGTGGGCGCTCAA 3049129 29 100.0 32 NNNNNNNNNN ............................. CAGAACCCAGTCTCAAAGTAGTTGCCATCGAA 3049190 29 100.0 32 NNNNNNNNNN ............................. CGATGTCGTCCACGCTCAGTGCGGGGGCATCG 3049251 29 100.0 32 NNNNNNNNNN ............................. GGAGTCGGGCCGCTTTGTTCTGGTGCCCACGC 3049312 29 100.0 32 NNNNNNNNNN ............................. ATGTGGTTCCAACTTCTGTCCTTCTCCCATAG 3049373 29 100.0 32 NNNNNNNNNN ............................. TCGAACTGTTCAAACGCTGAGCAAATATCGGT 3049434 29 100.0 32 NNNNNNNNNN ............................. ACTGTGGATGGCTCCCGTGATCTGCGGGGTGC 3049495 29 100.0 32 NNNNNNNNNN ............................. TCATGTGTAGGAGACAGATACGAAGTATCTGT 3049556 29 100.0 32 NNNNNNNNNN ............................. GCTTGTCTTCCACCACAGAAGCCTTTGCAATC 3049617 29 100.0 32 NNNNNNNNNN ............................. CCCTCGGATTTTGCGCGCCGCACGATGGCCGC 3049678 29 100.0 32 NNNNNNNNNN ............................. TTCAGGGCCCCATTCCATGGCCGCTTCTTGCC 3049739 29 100.0 33 NNNNNNNNNN ............................. GACTGCCGCATTGATGTTGTCGCAGGCCATATA 3049801 29 100.0 32 NNNNNNNNNN ............................. CTGGGGCTGGGTGCGGTTACCCCCAAGCTGAG 3049862 29 100.0 32 NNNNNNNNNN ............................. CGGTGGTTGACCCGCACCGTCCAGGTGCGGGT 3049923 29 100.0 32 NNNNNNNNNN ............................. ATGAAATGCGTATGCCGCTGCGTCGACCATGT 3049984 29 100.0 32 NNNNNNNNNN ............................. ACCAACGCATGGCCGCTATACGACTACGCCAT 3050045 29 100.0 33 NNNNNNNNNN ............................. GGGGAAAAGGCCAAAGCCTGGTTGCGCTCAAAG 3050107 29 100.0 31 NNNNNNNNNN ............................. GGCCCCCAGGCCTGGGCGGGCAGCCTCTGCT 3050167 29 100.0 32 NNNNNNNNNN ............................. GATACATCGTTCGCCGAATCGCGGGGGTGGGG 3050228 29 100.0 32 NNNNNNNNNN ............................. GAGTCTCTTGGGGAGAAAGCAAAAACCAGGGA 3050289 29 100.0 30 NNNNNNNNNN ............................. CACTGGTGGCCGGGAGTATGGACACAATGT 3050348 29 100.0 32 NNNNNNNNNN ............................. TCCACCGCGCCATCGGCTATATGCAGGCCTAC 3050409 29 100.0 32 NNNNNNNNNN ............................. ACAACGAAACGCACTTCGGCGTCACCGAGTGT 3050470 29 100.0 32 NNNNNNNNNN ............................. CGGCCAGCAGCGGCGATTGCAGCATCGAAAAG 3050531 29 100.0 32 NNNNNNNNNN ............................. ACCCGACGCACAAGCTCAGGCGGCAGCTTGAC 3050592 29 100.0 32 NNNNNNNNNN ............................. GGGGCGACATGGGAAAAGGGAAGTGAGCCCAC 3050653 29 100.0 33 NNNNNNNNNN ............................. GCGTGGGCCCGGGGGAAGGGGGATTGAACCCTA 3050715 29 100.0 31 NNNNNNNNNN ............................. GACGGCCACCATCTTTGAACGGCAGGTGGCC 3050775 29 100.0 33 NNNNNNNNNN ............................. ATTACATGGTAGCGCGCCATTGTGTAATGTCCA 3050837 29 100.0 33 NNNNNNNNNN ............................. GCCGAGGGCAAAAGACGGGCTTCCCTACCTGAC 3050899 29 100.0 33 NNNNNNNNNN ............................. GTAGCGCTCCATGTCCTTGGTGTGATCGTTTTC 3050961 29 100.0 32 NNNNNNNNNN ............................. TACGAGCGCTGGGGGACGAAGGGGCCGCCCTA 3051022 29 100.0 33 NNNNNNNNNN ............................. GGCATCATCTAGGGGGCTAGACGTGCTCGAGTA 3051084 29 100.0 32 NNNNNNNNNN ............................. GCTCGAGGCGGGCCCGGTCATCCGGTTCAGCA 3051145 29 100.0 32 NNNNNNNNNN ............................. ACTGCCCAAGCGTGACAAAAAAGGACGCTTCA 3051206 29 100.0 32 NNNNNNNNNN ............................. TTCACCAAGCAAGCCTTGCACAACCTGCGCGG 3051267 29 100.0 32 NNNNNNNNNN ............................. TGTGGCCTGATACCGTGTGGCGGCATCCTCAG 3051328 29 100.0 32 NNNNNNNNNN ............................. TCCTCTACCCCCCTGGTGGTACGTCTGAGACC 3051389 29 100.0 33 NNNNNNNNNN ............................. GCGCGCTACCCGCCAGGTCATGCCAGTTCCCTC 3051451 29 100.0 32 NNNNNNNNNN ............................. TGGGGCCCCGCCGATTGGGCCGATGCCCTGCG 3051512 29 100.0 32 NNNNNNNNNN ............................. GCGCACGGCCAACCGGCTCAGCACCGGGCGCA 3051573 29 100.0 33 NNNNNNNNNN G............................ GCAGCACGTCTTGGACGTGTACTGCGGTGGCAC 3051635 29 100.0 32 NNNNNNNNNN ............................. GCATTTCGCGATGGGCTCCGCGCCGATGGCTA 3051696 29 100.0 33 NNNNNNNNNN ............................. GAGGGCCCTGTCCAGGCCCAGCGCCAGAATGAC 3051758 29 100.0 31 NNNNNNNNNN ............................. CCCTGCTAAAGTGGGAATCCGGATATTCATG 3051818 29 100.0 32 NNNNNNNNNN ............................. CTCGCGCATGGAGAGGGTCAGGGTCAGGCCGT 3051879 29 100.0 33 NNNNNNNNNN ............................. GGCAACCCCCACAAGTCCCGAGGCGGCGCAGAG 3051941 29 100.0 32 NNNNNNNNNN ............................. GGGCGACTTCTCGATCGGGACTTCGCCCCATC 3052002 29 100.0 33 NNNNNNNNNN ............................. CTCGAGGGCCGGGTTGCTGAAGCCGATGTCCAC 3052064 29 100.0 33 NNNNNNNNNN ............................. AAAGACCCTCGGTCTGGACGTAGGGCTACAGGA 3052126 29 100.0 32 NNNNNNNNNN ............................. GGCGTACTCCTGGCCGAAGATCAGGCTTAAGA 3052187 29 100.0 33 NNNNNNNNNN ............................. GCTGGCGCATGGCCGCTCGAGCATCTCATGGCC 3052249 29 100.0 32 NNNNNNNNNN ............................. GTTGTAGGGCGGGGCTCCCTGCCCGACCAGGG 3052310 29 100.0 31 NNNNNNNNNN ............................. GCACCGGGTACCAGTCGAGGGCCTGAGGGAG 3052370 29 100.0 32 NNNNNNNNNN ............................. GTCCTGCCCGAGCATTTCGCGCTCGTGCAGTT 3052431 29 100.0 32 NNNNNNNNNN ............................. TCCGACGAGCCCAAGCCGGTGCTGCGCTTTCT 3052492 29 100.0 32 NNNNNNNNNN ............................. TGTACCGGGCGGCTCAAAACGCGCTACAAGAG 3052553 29 100.0 32 NNNNNNNNNN ............................. TCAGGCTCGGGGGCGGCCCAGGGGCAGGCCGC 3052614 29 100.0 34 NNNNNNNNNN ............................. GGACGCGGATGGGTATTTCTCTCATGCGTCACCT 3052677 29 100.0 32 NNNNNNNNNN ............................. TGCGCAAACATTCGGTGCCGATAGGGTACGCT 3052738 29 100.0 32 NNNNNNNNNN ............................. GTTAGCGAGTCAGGGGATATTTACAGGATTTC 3052799 29 100.0 34 NNNNNNNNNN ............................. GGACGCGGATGGGTATTTCTCTCATGCGTCACCT 3052862 29 100.0 32 NNNNNNNNNN ............................. TGCGCAAACATTCGGTGCCGATAGGGTACGCT 3052923 29 100.0 32 NNNNNNNNNN ............................. GTTAGCGAGTCAGGGGATATTTACAGGATTTC 3052984 29 100.0 32 NNNNNNNNNN ............................. GTCGCCGGGCACCTGGCTGCCGTACAGGCGCT 3053045 29 100.0 32 NNNNNNNNNN ............................. CAGCTCTACACCCAGCACATCGGATCCGGCAC 3053106 29 100.0 33 NNNNNNNNNN ............................. TCATCGGGACAATCAAGAACGGCTCAGGGACTT 3053168 29 100.0 31 NNNNNNNNNN ............................. GCGACGCTGGGCTGTGCAACGACGCTCTGCC 3053228 29 100.0 32 NNNNNNNNNN ............................. CCGCTCCACTAGCCTGTAGGTCCAGTATACGT 3053289 29 100.0 32 NNNNNNNNNN .......................A..... TGCAGGTGGCTACTGTGGCTGTGGCCACTATT 3053350 29 100.0 32 NNNNNNNNNN ............................. GGGGACGCCCCGATTGATAAGTGGGGCGGATC 3053411 29 100.0 33 NNNNNNNNNN T............................ GCGGCGCTGCTCTTTTCGTTTTTCCCGTTTGCT 3053473 29 100.0 33 NNNNNNNNNN ............................. GCTGCTGACCGTGCTGGGGGACACGGCATCGGC 3053535 29 100.0 31 NNNNNNNNNN ............................. GTTGAACGGTCCGTTGAGGACAGGGTGCTTT 3053595 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 75 29 32 CGGTTCATCCCCGCGGGTGCGGGGAATAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [20,22] Score: 0/0.18 # # Final direction: R [0,0.37 Confidence: MEDIUM] >NC_013947 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3798824 37 100.0 36 NNNNNNNNNN CACTGC.AT.CTCGCCAGAGGA............... CGGCAGCGCGCCGCCGTCCCGGACCCGGCGCTGCTG 3798897 37 100.0 36 NNNNNNNNNN ..................A.................. CACGAGCGGTCCCGGAGGAGACAGGCCCGGAGCAGG 3798970 37 100.0 35 NNNNNNNNNN ..................................... ATTCCGCTACGGCGGCGGTGGACAAGCTGGTGCGT 3799042 37 100.0 34 NNNNNNNNNN ..................................... GAAGGCTTACCGCCCGTGCCAGGTTCGCCGTGTT 3799113 37 100.0 34 NNNNNNNNNN ................A.................... ACTGGCAGAGCTGGAAAGCGATCAACCGCGAACA 3799184 37 100.0 36 NNNNNNNNNN ..................................... GGTCCTCGTTGCCGCGTTGGTGTTGCGGACCTCGAG 3799257 37 100.0 35 NNNNNNNNNN ..............................C...... CGGCGTCCCACCGCGGCGGCTGCGGTGACGATCGG 3799329 37 100.0 36 NNNNNNNNNN ..................................... CGTCGTGGTGGCGACGTGCTCACGGATCAACTCCTG 3799402 37 100.0 36 NNNNNNNNNN ..................................... TGGCGTTGTACTCGTCTAGCGGCTGGTTAAGCCGCA 3799475 37 100.0 34 NNNNNNNNNN ..................................... AGCTGCTTCCGTGGATTCAGTCGCACCCCAACAT 3799546 37 100.0 36 NNNNNNNNNN ..................................... CGGCAACGGAGCGTTGGCGAGGTTCTTGAGGACCTC 3799619 37 100.0 37 NNNNNNNNNN ..................................... TGGAGTCGTGGACGTGCGCCGACGCCCACGAGATCCT 3799693 37 100.0 35 NNNNNNNNNN ..................................... ACGATCGCCAGCAGCAGCGGTCCCCACTCGCGGAA 3799765 37 100.0 35 NNNNNNNNNN ..................................... ACGATCGCCAGCAGCAGCGGTCCCCACTCGCGGAA 3799837 37 100.0 35 NNNNNNNNNN ..................................... AGGTCACCAATCCCAATCAGCTGGTCTTGCGCCAT 3799909 37 100.0 1 NNNNNNNNNN ..................................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 16 37 35 GTTGCGATCCTCGCTGGAGCTGGTGCTCCAGCGCCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-15.80,-15.80] Score: 0/0.37 # Array degeneracy analysis suggestion: R [22-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [121,310] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_013947 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 3805005 19 100.0 52 GGAGCACCAG ................... AGCAGCTGCAAGCCTATGCGCTGCACCTGGAGGCGTGGCGCTGGAGCACCAG 3805076 19 100.0 54 GGAGCACCAG ................... CTCGTCGACCCCGACACTGGCGCCCGCCGGATCCTGGTGGCGCTGGAGCACCAG 3805149 19 100.0 52 GGAGCACCAG ................... CATGGCGACGTCGAAACGCACCCACCGGCGGCGTGTGGCGCTGGAGCACCAG 3805220 19 36.8 53 GGAGCACCAG .......------------ TCCAGCTCCAGCTCCAGCTCCCGCTCCCGCTCCCGCTCCCGCTCCCGCTCCCG 3805292 19 100.0 54 CCCGCTCCCG ................... ATCGCTTCGGTTCCCGGATTTGACACTGAGTCGGATGTGGCGCTGGAGCACCAG 3805365 19 100.0 53 GGAGCACCAG ................... GTGTGGTTCCCCGAATGATGGGGACCTGGATGACCGTGGCGCTGGAGCACCCA 3805437 19 100.0 53 GGAGCACCCA ................... AACCGCCGCGTCTGCGGTATCCACACCGGTTGGGAGTGGCGCTGGAGCACCCA 3805509 19 100.0 54 GGAGCACCCA ................... GGTGTTGGGCCGTACCCGCCCGACCGCGCGGATCGCGTGGCGCTGGAGCACCAC 3805582 19 100.0 54 GGAGCACCAC ................... TGCGACAGACTGCCGAGCCCTTTGGACAGTTGGCCCGTGGCGCTGGAGCATCCG 3805655 19 100.0 54 GGAGCATCCG ................... ATCATCCTGATCACGTGCGAAGTCCAGGCCCTCATTGTGGCGCTGGAGCATCCG 3805728 19 94.7 GGAGCATCCG .C................. AACAGCACTG ========== ====== ====== ====== ========== =================== 11 19 53 CTCCAGCGAGGATCGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [669,702] Score: 0/0.18 # # Final direction: F [0.78,0.27 Confidence: MEDIUM] >NC_013947 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3808599 37 100.0 35 TATAGGAACC ..................................... TTGGTGATGACGTGATGCTGGCTGGCCATCTCCAC 3808671 37 100.0 36 CCATCTCCAC ..................................... GGCCGAAACGATGGGTCAGCAGAACGTCGAGGACCG 3808744 37 100.0 34 TCGAGGACCG ..................................... GGGACCGCGTCGAGGTCGAGGCGGCGCATCGTGC 3808815 37 100.0 36 CGCATCGTGC ..................................... TTCGCGTCGGCGGCGCCAACAGCGATCAGCGCGCGC 3808888 37 100.0 35 CAGCGCGCGC ..................................... CGGCACTGCTGCACTGGTCCGGCCCGGCCGTCGTG 3808960 37 100.0 35 GGCCGTCGTG ..................................... GAGTAATACGCCACGATGACCGCCGACACGTACGT 3809032 37 97.3 35 ACACGTACGT ............................A........ GCGAACTGGTGCGAACACCCCTGTGTCAACGACAG 3809104 37 97.3 TCAACGACAG ................T.................... CGTTGGAATC ========== ====== ====== ====== ========== ===================================== 8 37 35 GTGGCGCTGGAGCATCCGCTCCAGCGAGGATCGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [7,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-15.80,-15.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [574,1120] Score: 0/0.18 # # Final direction: F [1.42,0 Confidence: HIGH] >NC_013949 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 24706 36 100.0 29 NNNNNNNNNN .................................... TAGAGTTAGTAGTTCTCTTTTTCTTTCCT 24771 36 100.0 30 NNNNNNNNNN .................................... TGAGCTATACGGATTGCAAAGATTCTTTTT 24837 36 100.0 30 NNNNNNNNNN .................................... GCTGCGGTCTTGATTATTGGTAGCATTCGT 24903 36 100.0 30 NNNNNNNNNN .................................... TTTAAAGTTTTGCGGCGATGAACTGCATGT 24969 36 100.0 30 NNNNNNNNNN .................................... CTTGCTCCACCCACACGTTATACTTGCTAG 25035 36 100.0 30 NNNNNNNNNN .................................... TCAACGCCTGCAATATTGTAATTAATCTTC 25101 36 100.0 30 NNNNNNNNNN .................................... CCCTTCTTGGTTTTGATGCCACTCTAAACG 25167 36 100.0 30 NNNNNNNNNN .................................... TCGTAGCGTTATCTTTCCCATGCACAGCAT 25233 36 100.0 30 NNNNNNNNNN .................................... TGATGCAGTTGCAACACGTAGAAAGAGTCT 25299 36 100.0 30 NNNNNNNNNN .................................... TTGGAAAAACTTTACATAGAGACCCGCATA 25365 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 11 36 29 GTTTTAGCCACTTCATAAATATGTTTATGCTAAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [375,114] Score: 0.18/0.18 # # Final direction: F [0.18,0 Confidence: MEDIUM] >NC_013966 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 204975 30 100.0 37 NNNNNNNNNN .............................. GCAGGCATCTCGACCGGCGACCTCCCGGAACACTTTG 205042 30 100.0 37 NNNNNNNNNN .............................. TGCACAAGTCCATCAAAGAAGACGGTTACACGCAACC 205109 30 100.0 35 NNNNNNNNNN .............................. GTCCTCGACGAAGCCGGGGTCCAATTCGGGAACCG 205174 30 100.0 37 NNNNNNNNNN .............................. GCGACCGGGCCGAACGAAACCGCGCAGAACATCACGG 205241 30 100.0 36 NNNNNNNNNN .............................. AGGACACGTCTGCGCTGCGTGCGCCTACTGCATGAG 205307 30 100.0 36 NNNNNNNNNN .............................. GCGCACGCGTAGGCCCCGAGCACGAACGCGACCGGG 205373 30 100.0 37 NNNNNNNNNN .............................. TGATTCTCGAAGGAGCCGAGCGCGGCTTCCGTGGAAT 205440 30 100.0 35 NNNNNNNNNN .............................. GTGAAGGTCAAACGCTTCTGGTAGGCAGGCCCGCG 205505 30 100.0 36 NNNNNNNNNN .............................. AGTCTGCGGTCCCGGCGTTGTGAATGTGAACGACTT 205571 30 100.0 35 NNNNNNNNNN .............................. GCCGATTGCGATATTTTTCAGAATCGGCGACTGTT 205636 30 100.0 37 NNNNNNNNNN .............................. GGTGTCCAAATGTCGCCAGAGAATTCCTGTCAAGCTT 205703 30 100.0 37 NNNNNNNNNN .............................. TGACGCTGTTCGATGTCTTTCAACTCGTTTGTCTCTC 205770 30 100.0 35 NNNNNNNNNN .............................. GGCCTCCGCGGCGGGCGGTAAAGCCGATTCATCCT 205835 30 100.0 35 NNNNNNNNNN .............................. GACGGTTCCGTTCTCGTCGTAGATCGTCACGTCCA 205900 30 100.0 36 NNNNNNNNNN .............................. GCGCGACAGAGCCCGTCGAGATCTCCGAAGGCGAGA 205966 30 100.0 37 NNNNNNNNNN .............................. TCTCGGCAACAGACCCTGCGTTAGTAATTTGGACACT 206033 30 100.0 36 NNNNNNNNNN .............................. AGATTGTGGATGAACGTCACGCCAAGCCGACCGGGA 206099 30 100.0 37 NNNNNNNNNN .............................. GACGAGACGATCGGGCTTCTGGAAGACCAGGAGGAAG 206166 30 100.0 34 NNNNNNNNNN .............................. TTCAGCGACTACGACCTGATGCGCTCCGATACAG 206230 30 100.0 37 NNNNNNNNNN .............................. ATGATCCGCGTGGTCCGGTTGACGTTCGGCTGCTCTT 206297 30 100.0 35 NNNNNNNNNN .............................. TATCACCCGTGGGCCGGTGACAACGAGGACCACGA 206362 30 100.0 35 NNNNNNNNNN .............................. ATTTTGCCGGACGCTTCGGGAGTTGATTCATAGTT 206427 30 100.0 37 NNNNNNNNNN .............................. GTCGCTCGCGGGATCGACATCATCGCGCTCAAGGCGA 206494 30 100.0 36 NNNNNNNNNN .............................. TAGTCCGCCCCGCACTCAGGGCACGCGTCGTCGTCC 206560 30 100.0 36 NNNNNNNNNN .............................. TGCGCGTGCAGCTCGTTTGATGAGACGTCACCACCG 206626 30 100.0 36 NNNNNNNNNN .............................. GAGGGCGGGGGCAACGTCGCGGAGATGCAGGACCTC 206692 30 100.0 37 NNNNNNNNNN .............................. GAGACGATTGAGTGGGGCGGTGACTCCGCTATGGCAG 206759 30 100.0 38 NNNNNNNNNN .............................. TATTACAATTGCCAAAAACCACGTTGCTAATAGCTCCG 206827 30 100.0 36 NNNNNNNNNN .............................. GGGAGTGTATGCGATATCCCTTAAAACCCCCTACTT 206893 30 100.0 36 NNNNNNNNNN .............................. ACTCGTCGCACGTGTTAGTTTTCGGTTCGCTCGTTT 206959 30 100.0 36 NNNNNNNNNN .............................. GGCGGGCTCGGCAGGAGCTCGAAGACCGCTTTTCGG 207025 30 100.0 35 NNNNNNNNNN .............................. ACCGACGATGTAACTGTCTCGGCGGCAACGCTCCC 207090 30 100.0 36 NNNNNNNNNN .............................. ACTCTCCGCGTCCGACTGCTCGACATCCCGACATCG 207156 30 100.0 36 NNNNNNNNNN .............................. ACCGCGAAATCGGCGTCAATCGTCACGTCCGGTAGG 207222 30 100.0 36 NNNNNNNNNN .............................. CACTCTGCGAAGCCGTCGATGAAGTCCTCGAACTCC 207288 30 100.0 35 NNNNNNNNNN .............................. TTTTCTACGAGGTCGGAAACGGACACTTCGACGTT 207353 30 100.0 37 NNNNNNNNNN .............................. TCGAAGCCGCAGACGACGGCGCAGAGAGCGGTATCAC 207420 30 100.0 36 NNNNNNNNNN .............................. CGGCTCGACGACGATTACTTCGCGCTCGAAGCTCGT 207486 30 100.0 39 NNNNNNNNNN .............................. GTCGCTCGCGGGATCGACATCATCGCGCTCAAGGCGATG 207555 30 100.0 1 NNNNNNNNNN .............................T NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 40 30 36 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [7,8] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-4.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [160,371] Score: 0.18/0.18 # # Final direction: F [1.28,0.82 Confidence: LOW] >NC_013966 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 218011 30 100.0 37 CACGTCTGTG .............................. CGCTGGCGTCCGAGTAATTACGCCTGCCCCGAGTGCG 218078 30 100.0 36 CCCGAGTGCG .............................. AGCACCTCCGTGGGAGTTGTCGATTCTATCGAAGCG 218144 30 100.0 35 TATCGAAGCG .............................. TGCTAGTCGGACCGAGGGAGGAAGCCTCTCGGATC 218209 30 100.0 37 CTCTCGGATC .............................. GACAACGTTCGCCACCCCGAGACGGGTAACTTCACAG 218276 30 100.0 35 AACTTCACAG .............................. TGTGGGGAACAAGCAATAGAGGACTTTGAAGGATG 218341 30 100.0 35 TTGAAGGATG .............................. CGTCCGGCGACCCGAATATGTCCGTCCCCGTGCGG 218406 30 100.0 37 CCCCGTGCGG .............................. GGCGACAACGACGGCAACCTCGAAGTCTGCGCCGCCT 218473 30 96.7 TGCGCCGCCT ......................G....... GGCACCTACG ========== ====== ====== ====== ========== ============================== 8 30 36 GTTTCAGACGAACCCTTGTGGGTTTGAAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,9] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTTCAGACGAACCCTTGTGGGTTTGAAGC with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-7.60,-6.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [45.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [396,112] Score: 0.18/0.18 # # Final direction: F [1.73,0.37 Confidence: MEDIUM] >NC_013967 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2385045 30 100.0 36 NNNNNNNNNN T.....CTT.G.T.C............... ATCCACCGTGCCGCCGAACGAGACCACGTTAGTCGA 2385111 30 100.0 38 NNNNNNNNNN .............................. GCGGGCAACCACCCGAGCGGAGGTGTCGACGCATGAGC 2385179 30 100.0 34 NNNNNNNNNN .............................. ACTGCATGAGCGCCTGGGCAGTCCCGTCGACGGA 2385243 30 100.0 36 NNNNNNNNNN .............................. GGTCGGACCGCCACCGAGCCAGCGCTCGCGACGGCC 2385309 30 100.0 37 NNNNNNNNNN .............................. CTTTTCCTCGCGCCCCTCGCAAAGCACTCGATAGGCG 2385376 30 100.0 39 NNNNNNNNNN .............................. TCGGACGCCGACCGCCTGGACATCTACGTCTACGATCCG 2385445 30 100.0 36 NNNNNNNNNN .............................. AGTCTTCGCCGTCGCCCACCGCCATGGCGTTATCCA 2385511 30 100.0 37 NNNNNNNNNN .............................. GCGTGTCGTTTGAGGTGTCGACAACATTTGCAAAATT 2385578 30 100.0 37 NNNNNNNNNN .............................. CCGCTGCCCCCGAGTTGTCAACCGCTTCAAGTGCGGT 2385645 30 100.0 37 NNNNNNNNNN .............................. CGGTGTCGAGGTCGTTCGCTCCGGCGGGGATTTCGAC 2385712 30 100.0 37 NNNNNNNNNN .............................. CGTCCGATGCGCTGTCGGCGTCGATGCGGAACTCGAT 2385779 30 100.0 34 NNNNNNNNNN .............................. CACCGTGTTCAGTCTCTTGTCGCAGTCGGATGTC 2385843 30 100.0 36 NNNNNNNNNN .............................. TCGCGTCGCCATCACGGCGCTGACATTCGCCTACGC 2385909 30 100.0 37 NNNNNNNNNN .............................. GGTGTTCGAGGAATACATGGCCCCGGAGGGCGAGGAC 2385976 30 100.0 36 NNNNNNNNNN .............................. AATCTTCCGTGGGATCTCGTAGTAATCGAGGATTTT 2386042 30 100.0 35 NNNNNNNNNN .............................. CGCTCGATACCGTCGTTGCTGTCAGCGACCTCCGC 2386107 30 100.0 37 NNNNNNNNNN .............................. ACGATTTACGAGATTATCGAAAGAATGGACGTTGAAA 2386174 30 100.0 34 NNNNNNNNNN .............................. ACCAACGACTCGGATGGAAGCTGGTGAGCGATAT 2386238 30 100.0 35 NNNNNNNNNN .............................. TGGGATTCGGTCTCCACAAAGACCCCACTAACTGT 2386303 30 100.0 35 NNNNNNNNNN .............................. GGGTTCGGCATGCTCCCATAGCCGCCAGTGCCGTC 2386368 30 100.0 36 NNNNNNNNNN .............................. GACGTCGACGATGTTGTCTCGGACGAGGTCGGGCAT 2386434 30 100.0 35 NNNNNNNNNN .............................. TGGGGGCGTGGAACCAATGAACCGGTCGTCGACCG 2386499 30 100.0 36 NNNNNNNNNN .............................. CGTGACTTCGAAGTCGCCGCAGACGTGCGTTCCCTC 2386565 30 100.0 36 NNNNNNNNNN .............................. TTTCTGAGATTCGAGGGCATCTTCGGACCTTTCCTC 2386631 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 25 30 36 GCTTCAACCCCACAAGGGTTCGTCTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-5.20,-6.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [336,215] Score: 0/0.18 # # Final direction: R [0.37,1.28 Confidence: MEDIUM] >NC_013960 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1192984 28 100.0 32 TTAAGTTACT ............................ TCCAGGCTTTCCATAAATCTCTTAACAGCCGT 1193044 28 100.0 33 TAACAGCCGT ............................ ATACTTACAAACTTTGAATGTACATCTCCTAAT 1193105 28 100.0 33 ATCTCCTAAT ............................ ATGCTGGAAAAGGAAGATCCACGTACCCCGCAA 1193166 28 100.0 32 TACCCCGCAA ............................ ATCGTCGTTGCGGTAGAGGAGAAACTGATGCC 1193226 28 100.0 32 AACTGATGCC ............................ TACAAAAAATGATAGGTAGGTGGAGTCTTGCT 1193286 28 100.0 32 GAGTCTTGCT ............................ ATCCTCCTGGGTTTCGTAGCGGCCATGCTTAC 1193346 28 100.0 32 CCATGCTTAC ............................ AAAAGTTTAAGCATCCCCTCAGACATTTTCCT 1193406 28 100.0 32 ACATTTTCCT ............................ ACTCGGGTGGAAAAGTGCTTCCCGGTAATTCC 1193466 28 100.0 32 CGGTAATTCC ............................ ACAAAGACCGGGCGTTATGGCTGACCAAGCGA 1193526 28 100.0 32 GACCAAGCGA ............................ AAAGATCTATTCATAGACACAGATCATAAGTT 1193586 28 100.0 32 ATCATAAGTT ............................ ACCCGACCCTCGCCGCTTCATCGTATGCGGTC 1193646 28 100.0 32 GTATGCGGTC ............................ CTATGAATAACACACCACTGCGATTCAATTCC 1193706 28 100.0 32 ATTCAATTCC ............................ TGATGCGGTCCGAAGGAGGGCAGTGCCTAGGG 1193766 28 100.0 32 GTGCCTAGGG ............................ ACGTGTTTAATAACCCCGTAGTTCGTAGTGGG 1193826 28 100.0 32 TCGTAGTGGG ............................ ACCCGACCCTCGCCGCTTCATCGTATGCGGTC 1193886 28 100.0 32 GTATGCGGTC ............................ CTATGAATAACACACCACTGCGATTCAATTCC 1193946 28 100.0 32 ATTCAATTCC ............................ TATCGGATAGGACACGGGAGTCCTACTAACTA 1194006 28 100.0 32 CTACTAACTA ............................ TGAAGATATTTATGGGGATGAGATAGTTTAAG 1194066 28 100.0 32 ATAGTTTAAG ............................ ACCCGACCCTCGCCGCTTCATCGTATGCGGTC 1194126 28 100.0 32 GTATGCGGTC ............................ CTATGAATAACACACCACTGCGATTCAATTCC 1194186 28 100.0 32 ATTCAATTCC ............................ CGAAATTGCGGAAGTCAGCGTGATAGCGTTAA 1194246 28 100.0 32 ATAGCGTTAA ............................ TCCTGCCACGGCAATAAGTCCCATCTTGGCTT 1194306 28 100.0 32 ATCTTGGCTT ............................ TTCCACAAATCTCTAAGTAACCGCTTCTCCGT 1194366 28 100.0 32 GCTTCTCCGT ............................ ATACCGAACACGACGATCTCAGGCCGGATGGA 1194426 28 100.0 33 GCCGGATGGA ............................ ACAGGGGTCTAACCCTATAAGAATCAATATATA 1194487 28 100.0 32 TCAATATATA ............................ TTTAGCGATGAAAATAGGTGTTCCGGTGCCGC 1194547 28 100.0 32 CCGGTGCCGC ............................ TTGCGTATATTTGGGAGCAAGAGCTGTCTAAT 1194607 28 100.0 32 GCTGTCTAAT ............................ TAAAAGATTGCCAATAACTATTCCATCTCTAG 1194667 28 100.0 33 CCATCTCTAG ............................ CTCCTGAATTCATTATTTCTAATTTTTCAGATC 1194728 28 100.0 32 TTTTCAGATC ............................ AGGGGTATCAAAAGATATCTATTTGAATTTCC 1194788 28 100.0 32 TTGAATTTCC ............................ TGACAGCGGATTGACGCATTTATCCCATGCAG 1194848 28 100.0 TCCCATGCAG ............................ AAACACGAAA ========== ====== ====== ====== ========== ============================ 32 28 32 GTTCGCCGCCGCGTAGGCGGTTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-9.80,-9.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [135,215] Score: 0/0.18 # # Final direction: NA [0.37,0.37 Confidence: NA] >NC_013960 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2010353 37 100.0 35 CGGCGACGCC ..................................... CCACGACCTCCAGCTCCCCCCTGCATCTGCCGCAT 2010425 37 100.0 38 TCTGCCGCAT ..................................... ACGTATGATTTGCTGCGCTACGGGGTGAAGGTCAAGGC 2010500 37 100.0 36 AGGTCAAGGC ..................................... TTCTATTGCTTCTCCTTTACGATTCCAGATCCCAGC 2010573 37 100.0 37 AGATCCCAGC ..................................... CCTCCACCACTCTAAGGCATAGTCATCCATGGAGGCG 2010647 37 97.3 CATGGAGGCG ....................................T ACTCTTAAA ========== ====== ====== ====== ========== ===================================== 5 37 36 GCATCACCCGTCCTTCGGGGCGGGTGTGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [6,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-14.90,-9.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [179,21] Score: 0.18/0.18 # # Final direction: F [5.46,0.64 Confidence: HIGH] >NC_013960 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2905751 37 100.0 32 ACAGCGAGGA ..................................... GCACGGCCAACATTACGTTAGCACGAATTTCG 2905820 37 100.0 35 ACGAATTTCG ..................................... ACGTACCTGGTTATGGAATATCTCGCTCACCGTCT 2905892 37 100.0 34 CTCACCGTCT ..................................... TGTCGAACCGGCTATCTAGTATATCGAATAGGGT 2905963 37 100.0 35 CGAATAGGGT ..................................... GTCATGATATGTCTCCTATGTTGATGGTGTTGAGG 2906035 37 100.0 32 GGTGTTGAGG ..................................... TCGAGTTCGGAGTTGTCTTCTTCTGTGAGTTG 2906104 37 100.0 33 CTGTGAGTTG ..................................... ATCTAAATATACCCCATTGAATTCTATATCAGC 2906174 37 100.0 33 CTATATCAGC ..................................... CATCCACGGTGATACGTTTAATGCCTGTGGCGA 2906244 37 100.0 34 CCTGTGGCGA ..................................... TCAGTATTGATGATCTTTTCCTTCCTATCCTTCT 2906315 37 100.0 33 CTATCCTTCT ..................................... TTAGGGATATTGGAAAAGTCTGTTAAAGCTTTC 2906385 37 100.0 34 TAAAGCTTTC ..................................... TCAGTATTGATGATCTTTTCCTTCCTATCCTTCT 2906456 37 100.0 CTATCCTTCT ..................................... CATCAATCTT ========== ====== ====== ====== ========== ===================================== 11 37 33 GTTTGAAACGTAGACCTGATAAAGAAGGGATTAAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.16%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.80,-0.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [58.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [175,134] Score: 0/0.18 # # Final direction: F [0.37,0.27 Confidence: LOW] >NC_013960 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2908268 37 94.6 33 GGAATGTCGG --................................... AGTGTTAGGTAGTCATCATCGCTAAAATTGGCC 2908338 37 100.0 35 AAAATTGGCC ..................................... CCCGAGCAATAAAGCTATCTCTGAAACGCTGATAT 2908410 37 100.0 31 ACGCTGATAT ..................................... GCCGACCGGCTAGCAGTTCGATTCCTTTATA 2908478 37 100.0 35 TTCCTTTATA ..................................... GAGGAGGATCGACGGAATGAAGTAGCATACGGAAG 2908550 37 100.0 CATACGGAAG ..................................... CTATTTTTACTGATGGAATCATTATGACCCTCC ========== ====== ====== ====== ========== ===================================== 5 37 33 GTTTGAAACGTAGACCTGATAAAGAAGGGATTAAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.16%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.80,-0.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [31,220] Score: 0.18/0.18 # # Final direction: R [0.37,0.86 Confidence: MEDIUM] >NC_013960 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3003701 28 100.0 36 ATATAGAGGG ............................ GCTTCTATCTTTTGCTTGCGAATCGTCTCTGCCCAG 3003765 28 100.0 37 CTCTGCCCAG ............................ AACAGTAGCGCCACGCTTGATTTCACGACGCTTGAGA 3003830 28 100.0 36 ACGCTTGAGA ............................ GGCTTTGATCCAGCAAAAGAAGCCTCTGAACCAGAG 3003894 28 100.0 36 TGAACCAGAG ............................ TTTGCCGGGCCACTTTTACAGGAGTAAAAAATCATG 3003958 28 100.0 37 AAAAATCATG ............................ TCTACCTCCAAAAGATATGGTTAGCTATCCGTAGCGG 3004023 28 100.0 37 TCCGTAGCGG ............................ CAAGGATTAGCGGGTCAGATATCAAGTTTTCTAAATG 3004088 28 100.0 36 TTTCTAAATG ............................ CTTTGGTGATCTTGCCCATCACCTGACCAATGGCGG 3004152 28 100.0 37 CCAATGGCGG ............................ CCGTCCATGGTGACATCCTCTATAAACGCTTCCATAG 3004217 28 100.0 36 GCTTCCATAG ............................ CTTCTCTTTCGCGTATTGCTTCAATTGCCCGTAAAA 3004281 28 100.0 36 GCCCGTAAAA ............................ GCTCACCGCTAAACTTCAGCATCAGCTCTAACGGAG 3004345 28 100.0 36 TCTAACGGAG ............................ TTGATGTTCGTGAACGTGTAGGAATCACCGCTAGAT 3004409 28 100.0 36 ACCGCTAGAT ............................ TGGATAGACCTATTACCACTTTGTGGCGCGTCCAAT 3004473 28 100.0 36 CGCGTCCAAT ............................ CTGCCTAAGCGATAGAAATGTGGCCCCGCTAGTCCA 3004537 28 100.0 35 CGCTAGTCCA ............................ ATTTCTGTTGGCGTGCCACCTAAAGAAATTTTCAG 3004600 28 100.0 36 AAATTTTCAG ............................ GGCGATGGTGGGAGCAGACCAAAGGGGCAGACGCCC 3004664 28 100.0 36 GCAGACGCCC ............................ CTGCCTAAGCGATAGAAATGTGGCCCCGCTAGTCCA 3004728 28 100.0 36 CGCTAGTCCA ............................ CCTCCCCTCAGCCAATTTCTCAATATATTTTTTAGC 3004792 28 100.0 36 ATTTTTTAGC ............................ AATTCAAATATTTGGTCATCCGTCCATTCTGGAGAC 3004856 28 100.0 38 TTCTGGAGAC ............................ CCCTTCCTGTAGTCCACGCACCCGGCACGAAAATACCG 3004922 28 100.0 37 GAAAATACCG ............................ GTCGTCAACGCCCCAGAAATTGGCGCGTCCAAATAGT 3004987 28 100.0 36 TCCAAATAGT ............................ GAGGGAAGATAGCTCGATGCCACAACACCGAATACA 3005051 28 100.0 37 ACCGAATACA ............................ CGGTAGTATAGTTTTGATAACTGCTGCAAGTGCACGA 3005116 28 100.0 36 AAGTGCACGA ............................ ATTTGCGCTATACGCATCATCGGCTCAATTAGGAAG 3005180 28 100.0 35 AATTAGGAAG ............................ AGCGTTAATCTCAACAATATGGATAACGCTATCTC 3005243 28 100.0 37 ACGCTATCTC ............................ GCGGGTTGAGCATTTGCACCTTGGTCCCGTCGAGTTG 3005308 28 100.0 36 CGTCGAGTTG ............................ ATCGACGTGACCTCAGACGCGGACGCGTTCCTGGCG 3005372 28 100.0 37 GTTCCTGGCG ............................ AACAAAAACTTGGCCGTATCGCTGACTTATAGCAAAG 3005437 28 100.0 36 TATAGCAAAG ............................ AAGGACGGTTCCGGGAATGCTTATCTCTGGGATTTG 3005501 28 100.0 36 CTGGGATTTG ............................ TTGCTTGATAGGTTGAGCAGCACTCGGTCAGCAAAT 3005565 28 100.0 38 GTCAGCAAAT ............................ ATGTCAGGGTTTCTAGGATCGGGAGATTTATATTTCGT 3005631 28 100.0 36 TATATTTCGT ............................ TTGACCGAGACATCCGGCTCGGTAACTTTTAGCGTG 3005695 28 100.0 36 TTTTAGCGTG ............................ GTCAAAAACTTGGTACTCGTAACGGAATGTGTAGGT 3005759 28 100.0 37 ATGTGTAGGT ............................ GCTGCGAATATTGCTGAAGTTATGGATTATATCGACA 3005824 28 100.0 37 TATATCGACA ............................ TCGTTCATCAGCGGGGATTGCCCTTTTGACAGTTCTA 3005889 28 100.0 36 GACAGTTCTA ............................ CCATTGGCGTCCGAGCTTTCGGTCAGGGCGGTGCCG 3005953 28 100.0 GGCGGTGCCG ............................ GATTGTTGCA ========== ====== ====== ====== ========== ============================ 36 28 36 GTTACGAATCCCTATAAGGGGTTATGAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:57.14%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.90,-3.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [63.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [141,48] Score: 0.18/0.18 # # Final direction: F [0.82,0 Confidence: HIGH] >NC_013960 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3007065 28 100.0 38 ATATAGCCGC ............................ TCGCGCGCGCGCGTATTATATTTATTATTATCTTCTAT 3007131 28 96.4 38 TATCTTCTAT .........T.................. CCAAAGAAACAGGAGCGCTTGCTGTATCCATCATTTAA 3007197 28 100.0 36 CATCATTTAA ............................ GGCTCCAGAATCAGGCTTACATGAACAAGCTTAAGC 3007261 28 100.0 37 AAGCTTAAGC ............................ CATCAGGGAATCCCATCCATTTGTCTATCGAGTGCTG 3007326 28 100.0 TCGAGTGCTG ............................ ACTATAGGAAG ========== ====== ====== ====== ========== ============================ 5 28 37 GTTACGAATCCCTATAAGGGGTTATGAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:57.14%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.90,-3.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [72,465] Score: 0.18/0.18 # # Final direction: F [0.64,0.59 Confidence: LOW] >NC_013971 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 854678 29 100.0 32 NNNNNNNNNN ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 854739 29 100.0 32 NNNNNNNNNN ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 854800 29 100.0 32 NNNNNNNNNN ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 854861 29 100.0 32 NNNNNNNNNN ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 854922 29 100.0 32 NNNNNNNNNN ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 854983 29 100.0 32 NNNNNNNNNN ............................. CAAGCGATCAACCTGTTTTTCAGTAGGTTTAA 855044 29 100.0 32 NNNNNNNNNN ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 855105 29 100.0 32 NNNNNNNNNN ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 855166 29 100.0 32 NNNNNNNNNN ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 855227 29 100.0 32 NNNNNNNNNN ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 855288 29 100.0 32 NNNNNNNNNN ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 855349 29 100.0 32 NNNNNNNNNN ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 855410 29 100.0 32 NNNNNNNNNN ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 855471 29 100.0 32 NNNNNNNNNN ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 855532 29 100.0 32 NNNNNNNNNN ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 855593 29 100.0 32 NNNNNNNNNN ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 855654 29 100.0 32 NNNNNNNNNN ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 855715 29 100.0 32 NNNNNNNNNN ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 855776 29 100.0 32 NNNNNNNNNN ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 855837 29 100.0 32 NNNNNNNNNN ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 855898 29 100.0 32 NNNNNNNNNN ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 855959 29 100.0 32 NNNNNNNNNN ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 856020 29 100.0 32 NNNNNNNNNN ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 856081 29 100.0 32 NNNNNNNNNN ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 856142 29 100.0 32 NNNNNNNNNN ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 856203 29 100.0 32 NNNNNNNNNN ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 856264 29 100.0 32 NNNNNNNNNN ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 856325 29 100.0 32 NNNNNNNNNN .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 856386 29 100.0 32 NNNNNNNNNN ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 856447 29 100.0 32 NNNNNNNNNN ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 856508 29 100.0 32 NNNNNNNNNN ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 856569 29 100.0 32 NNNNNNNNNN ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 856630 29 100.0 32 NNNNNNNNNN ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 856691 29 100.0 32 NNNNNNNNNN .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 856752 29 100.0 32 NNNNNNNNNN ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 856813 29 100.0 1 NNNNNNNNNN ...........A........ATA..C.GC NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 36 29 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [5,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-13.40,-12.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [508,3] Score: 0.18/0.18 # # Final direction: F [1.73,0 Confidence: HIGH] >NC_013961 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2901529 29 96.6 32 GCGCCATCAT ...................T......... ATTTTTATTCTTTCGAGCTTTAGGCTTTTTTT 2901590 29 100.0 32 GGCTTTTTTT ............................. TAAATTCTGGCTCCAATCCTGAATCCATTGGC 2901651 29 100.0 32 ATCCATTGGC ............................. TGGAAAGCCGCCGGTTTTACCATTGTGGGCCA 2901712 29 100.0 32 TTGTGGGCCA ............................. AGCGCAGTACTGACCGATGCGGGGAATAGCTG 2901773 29 100.0 32 GGAATAGCTG ............................. ACCCGTAAGCAGCCTACCCGACCCGCAGATGA 2901834 29 100.0 32 CCGCAGATGA ............................. GTCAGAAATGACGTTTGCTAAATCCCCTCTGG 2901895 29 100.0 32 TCCCCTCTGG ............................. TGTCGGGTTTCGCCGCCACTGATTTGAGCGTC 2901956 29 100.0 32 TTTGAGCGTC ............................. AAAAGCCCCGGAGTGCTTAGAACACCTCGAGG 2902017 29 100.0 33 CACCTCGAGG ............................. GTGGTTTCTGAGTCTGGAATGTACACACTGGTG 2902079 29 100.0 32 CACACTGGTG ............................. GTTAGGAATTGCAACAATCGTTGCGTCACCCT 2902140 29 100.0 32 GCGTCACCCT ............................. TTAATCAGTGCCGGGAGATTGTCGTATGCGAA 2902201 29 100.0 32 CGTATGCGAA ............................. GAGTTAGGCAGAACCTATCAAACCTGAACCGG 2902262 29 100.0 32 CCTGAACCGG ............................. AGCACTACCCCCGATTTCGTCTCATGCTCCAG 2902323 29 100.0 32 CATGCTCCAG ............................. GTGATACAGCATGGGGAAATGCTAGTAAATAT 2902384 29 100.0 33 TAGTAAATAT ............................. ATAAATTTTCGTGTCGGCCCGTTCCTGAAAAAT 2902446 29 100.0 32 CCTGAAAAAT ............................. GCTTCCTGTTTGTTGGCATTTTTCATAAACAG 2902507 29 100.0 32 TCATAAACAG ............................. TGCCAGCGCAACCAGCGCCACCATCTGACCGT 2902568 29 100.0 32 ATCTGACCGT ............................. GCGAATCTTTCGCAAACATCGGTACGACCATC 2902629 29 100.0 32 TACGACCATC ............................. TAAAAAGTGCCTGGAATTTGCAGCCTCATCTG 2902690 29 100.0 32 GCCTCATCTG ............................. ACTGGCCAGCGGCTGTGCGTACACGTAGTAGC 2902751 29 100.0 32 ACGTAGTAGC ............................. GAACAGATATTTTCTGTGAAATCTCGTCCATT 2902812 29 96.6 32 CTCGTCCATT A............................ AATCACCTAGGAGAATCAAAACACCAGAAGGG 2902873 29 100.0 32 ACCAGAAGGG ............................. TCGAGAGTTAACGCCCGTTTGACGCTCCGCAG 2902934 29 100.0 32 CGCTCCGCAG ............................. CGATTTTGCTGATTCGATGGCGGCATTTTTTA 2902995 29 100.0 32 GCATTTTTTA ............................. AGTGACATTTTATTGTAATCAGCCGTATCAAC 2903056 29 100.0 32 CCGTATCAAC ............................. CAGTGGATTTATCGCGGCGATGGTTGCGGTTA 2903117 29 100.0 33 GTTGCGGTTA ............................. ATGTGCAAGGACGCTAATCTAAGTCGTTCCGAT 2903179 29 100.0 32 TCGTTCCGAT ............................. AAGAAATACAACCACTGCATAAACAGTCAAGT 2903240 29 100.0 32 ACAGTCAAGT ............................. TATATAATGCCCTAGCAAGTGATCCTTATAAT 2903301 29 100.0 32 TCCTTATAAT ............................. GAGCGGCTCCATAACTGTCACGCTGCTAAAAA 2903362 29 100.0 32 CTGCTAAAAA ............................. GCTGTTTTGTACAAGCTCATGTCCCCCCGAGC 2903423 29 100.0 32 CCCCCCGAGC ............................. TCAGTGAGGAGTCGGTATATCCAGTGCATCTC 2903484 29 100.0 32 AGTGCATCTC ............................. TCCAGTTTTTGCGCCAGACTGTCATAAAATGG 2903545 29 100.0 CATAAAATGG ............................. TCTAGATACA ========== ====== ====== ====== ========== ============================= 34 29 32 CGGTTTATCCCCGCATACGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [229,90] Score: 0.18/0.18 # # Final direction: R [0.55,0.68 Confidence: LOW] >NC_013961 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2914481 29 100.0 31 NNNNNNNNNN ...........GCTCATGCG...A.CAC. ATCACGCGCCATTCGGAACGTTACTTTATCA 2914541 29 100.0 32 NNNNNNNNNN ..........A.................. AGACAATGCCCTCACCGTTGTGTGTGAAGAAA 2914602 29 100.0 32 NNNNNNNNNN ...........T................. GGCGTCAGAGTCCGTTGATAAGATCTCAATCT 2914663 29 100.0 32 NNNNNNNNNN ............................. AGCAGTACGTTGACTGTAAAGGGTACAAAAGC 2914724 29 100.0 32 NNNNNNNNNN ............................. GATAAAGGCCGGATGGGATTCTGGCTGCTTCA 2914785 29 100.0 32 NNNNNNNNNN ............................. GAAAACATCGTCCCTGAAAGACTCTGATTCAA 2914846 29 100.0 32 NNNNNNNNNN T............................ ATCTGGTGGCAATTCGACATTCTCACCGAAGT 2914907 29 100.0 32 NNNNNNNNNN ............................. ATTGCTGGATAGAGGCAGCCCAGATAGACAGC 2914968 29 100.0 32 NNNNNNNNNN ...............A............. GCTCATTGCCAGCTCACTGCGGATTTTCGCGG 2915029 29 100.0 32 NNNNNNNNNN ............................. AAGAACGTCAACAATTGGCATTGTTCGATGTA 2915090 29 100.0 32 NNNNNNNNNN ............................. TTAATCACATCCAACGATACATTCAACGTAAC 2915151 29 100.0 32 NNNNNNNNNN ............................. TCTGAGTAACAACGCAAAGCCCTCCCCGAGGG 2915212 29 100.0 32 NNNNNNNNNN ............................. AAAAAAAGATAGATGACATGCGCAAATTTTTG 2915273 29 100.0 32 NNNNNNNNNN ............................. GTCACATTCCGTATGGCTCGTGACGCCATCAG 2915334 29 100.0 32 NNNNNNNNNN ............................. GTCGAACTTCGTTGAGGTTTCAGGCAAATCGT 2915395 29 100.0 32 NNNNNNNNNN ............................. TCGTTAAATTCCGTCCATGTATGCGAGAGTTT 2915456 29 100.0 32 NNNNNNNNNN ............................. GTAATCAAATTTGGCGGAGAGGATTTTACAAT 2915517 29 100.0 32 NNNNNNNNNN T............................ TCCTGGAAAACATGAGGGATGAGAATGATCTC 2915578 29 100.0 32 NNNNNNNNNN ............................. ATTGCAGCATCGGGCCGAGCCACAGGACATTT 2915639 29 100.0 32 NNNNNNNNNN ............................. GGGGCATCTCCGCCGACATTTCCGCCAAATCT 2915700 29 100.0 32 NNNNNNNNNN .................T........... GATTTTGTCAGTTGTATAAGCATGCTCCTTTA 2915761 29 100.0 32 NNNNNNNNNN ............................. AGCCGTCTGCGCCAAGAACGGACAACCATTTA 2915822 29 100.0 32 NNNNNNNNNN ............................. TAACTAGCAGACGATCTTTAAGTCTCTGCAAC 2915883 29 100.0 32 NNNNNNNNNN ............................. TCAGGTTTATTACGGGCGGGCGGTTGGCTTTT 2915944 29 100.0 32 NNNNNNNNNN ............................. TACCCTGCCGCTCCGCGTACTCCCTCATCGCC 2916005 29 100.0 32 NNNNNNNNNN ............................. CTGGCGGGTTAGCGGTGATTTTAAATTTCAGT 2916066 29 100.0 32 NNNNNNNNNN ............................. CCGCCGAGACAACCGGCTATCCGAAATACCTG 2916127 29 100.0 32 NNNNNNNNNN ............................. CGTGGGGGGGTAAGGGGGGTGTTGTCTTTTGT 2916188 29 100.0 32 NNNNNNNNNN ............................. GCTGTGAACAATTTCAGTGCTCATGCGCAATC 2916249 29 100.0 32 NNNNNNNNNN ............................. GCTGTGAACAATTTCAGTGCTCATGCGCAATC 2916310 29 100.0 32 NNNNNNNNNN ............................. TTAAACCTACTGAAAAACAGGTTGATCGCTTG 2916371 29 100.0 32 NNNNNNNNNN ............................. TTTTATGGAGATAATTAATGTCAAAGCATCTT 2916432 29 100.0 32 NNNNNNNNNN ............................. TTTTATACAAAAAACACAGTTCCCGAGATGCT 2916493 29 100.0 32 NNNNNNNNNN ............................. TCCATCACTCGCCGCCCTCCGCTTCTGCATAG 2916554 29 100.0 32 NNNNNNNNNN ............................. ATTGATAAATTATTTATCATTTTGCTATTTAC 2916615 29 100.0 32 NNNNNNNNNN ............................. CATGCCGCGAAGATAAAAAGGCTCATGAATAA 2916676 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 37 29 31 CGGTTTATCCCCGCTCACGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [5,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [43.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [4,283] Score: 0.18/0.18 # # Final direction: R [0,1.23 Confidence: HIGH] >NC_013966 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 55182 23 95.7 62 AATAGACGGT ..................T.... ATGGGAAAGGGCACGGGGACGGCACATCACATACAATAGAACGTCGGATCTCTAACGTCACC 55267 23 100.0 62 TAACGTCACC ....................... CGAGAAATCTGACGGGTGACACCCCCCATTTTCGAGCTGTAACGTACCACCCGAGCCGCGAA 55352 23 100.0 GAGCCGCGAA ....................... GCGCGGGGCGG ========== ====== ====== ====== ========== ======================= 3 23 62 CACCCCCCGTTTTCGAGTAGTAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-2.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [53.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [17,25] Score: 0/0.18 # # Final direction: R [0.27,1.15 Confidence: MEDIUM] >NC_013974 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1177833 29 100.0 37 TTATTTTGAG ............................. ACCTTAAAATCGTCAGATATATAACCTTTTTCTTTAT 1177899 29 100.0 37 TTTTCTTTAT ............................. TTTATATTAATAAAATCATTTACATTTAAACTCAACA 1177965 29 96.6 AAACTCAACA ................A............ GACCAAGATACTTGAAAAAATATCGCTGACTATTTTGA ========== ====== ====== ====== ========== ============================= 3 29 37 GTTTTATATTAACTATGTGGTATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA # # Final direction: F [0.91,0 Confidence: HIGH] >NC_013974 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1421021 29 100.0 36 TTATTTTGGG ............................. TGAAAATCTAGTTAAAAACTGCATCAAAGTATTGAT 1421086 29 100.0 37 AAGTATTGAT ............................. CAGCAAGAGTCGCAACAACATTAACAACTTCGGGAGC 1421152 29 100.0 37 CTTCGGGAGC ............................. TTGTATTATTACTTTTTATCAGAATAATCAAAAGATA 1421218 29 100.0 37 TCAAAAGATA ............................. GCAGAAGAAACAGGTTTCAAAACGATAAAAAAATAAT 1421284 29 100.0 38 AAAAAATAAT ............................. AGAGAGAAGGGCTATTCTCTCTAGGCTTATCCTTACAA 1421351 29 100.0 37 ATCCTTACAA ............................. AAACCAATCTTTTTTCCTTGAATCTTTTAAAAGTTCC 1421417 29 100.0 36 TAAAAGTTCC ............................. GATTTTAGAACTTCATCCACAAACGAGCTTTCTACA 1421482 29 100.0 37 GCTTTCTACA ............................. ATAGTCCTTTTCTAAATTTAGAATCAAGTTTTGGAGT 1421548 29 100.0 36 GTTTTGGAGT ............................. AGAGTAAAACAATAGTACAAGAACAAATAAATACAT 1421613 29 100.0 37 ATAAATACAT ............................. ACTTTTTCACGACATTTTTTTATAAAAGGAGGTATTA 1421679 29 100.0 37 GGAGGTATTA ............................. AAAATTATAGACAGAATGATAAATGTATTTGATGCTT 1421745 29 100.0 37 TTTGATGCTT ............................. TAACTTTATAAAACCCAGTAATTGCAACACTTTTATA 1421811 29 100.0 CACTTTTATA ............................. AGTATAATGTT ========== ====== ====== ====== ========== ============================= 13 29 36 GTTTTATATTAACTAAGTGGTATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA # # Final direction: F [0.5,0.27 Confidence: LOW] >NC_013971 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 867748 29 100.0 32 TGTATCTAGA ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 867809 29 100.0 32 AAAAACTGGA ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 867870 29 100.0 32 TCCTCACTGA ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 867931 29 100.0 32 ACAAAACAGC ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 867992 29 100.0 32 GGAGCCGCTC ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 868053 29 100.0 32 GCATTATATA ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 868114 29 100.0 33 TGTATTTCTT ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 868176 29 100.0 32 CCTTGCACAT ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 868237 29 100.0 32 AAATCCACTG ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 868298 29 100.0 32 AAATGTCACT ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 868359 29 100.0 32 AGCAAAATCG ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 868420 29 100.0 32 TAACTCTCGA ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 868481 29 96.6 32 CTAGGTGATT ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 868542 29 100.0 32 ATATCTGTTC ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 868603 29 100.0 32 GCACTTTTTA ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 868664 29 100.0 32 AAAGATTCGC ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 868725 29 100.0 32 TGCGCTGGCA ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 868786 29 100.0 33 AACAGGAAGC ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 868848 29 100.0 32 GAAAATTTAT ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 868909 29 100.0 32 GCTGTATCAC ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 868970 29 100.0 32 GGGTAGTGCT ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 869031 29 100.0 32 TGCCTAACTC ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 869092 29 100.0 32 CACTGATTAA ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 869153 29 100.0 33 AATTCCTAAC ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 869215 29 100.0 32 CAGAAACCAC ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 869276 29 100.0 32 CGGGGCTTTT ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 869337 29 100.0 32 AAACCCGACA ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 869398 29 100.0 32 CATTTCTGAC ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 869459 29 100.0 32 GCTTACGGGT ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 869520 29 100.0 32 GTACTGCGCT ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 869581 29 100.0 32 CCAGAATTTA ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 869642 29 96.6 GAATAAAAAT .........A................... ATGATGGCGC ========== ====== ====== ====== ========== ============================= 32 29 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [90,34] Score: 0.18/0.18 # # Final direction: F [0.86,0.37 Confidence: MEDIUM] >NC_013974 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1205008 29 100.0 37 GTTTAAAAGC ............................. GTTTTTAAAGCTTCTTCAAGTTGTATTTGTGTATAAT 1205074 29 100.0 36 TGTGTATAAT ............................. CCAACTGAATAAACAATAATTTTATCAATTTCTTTA 1205139 29 100.0 AATTTCTTTA ............................. TATTTTACAG ========== ====== ====== ====== ========== ============================= 3 29 36 GTTTTAGATTAACTATATGGAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [70.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA # # Final direction: R [0,0.27 Confidence: MEDIUM] >NC_013974 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1202005 29 100.0 37 TTATTTTGGG ............................. AATTTTTCGAGAGTCTCAATTTACAGAAGAAATTGGA 1202071 29 100.0 37 AGAAATTGGA ............................. CAAATTGTCTAATCCTAATTTTTTCTTTGCATCTTCT 1202137 29 100.0 38 TGCATCTTCT ............................. TGTAATTAAGTTAGATATGGCAAAAGAAATAGCTATGA 1202204 29 100.0 36 ATAGCTATGA ............................. TTTAATGATTCTACAACTCTTACAGACTCAGATGAT 1202269 29 100.0 CTCAGATGAT ............................. GGGTGGGAGATATGGCAACTATCCACACATGAAATTG ========== ====== ====== ====== ========== ============================= 5 29 37 GTTTTAGATTAACTATATGGAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA # # Final direction: NA [0,0 Confidence: NA] >NC_013974 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1706867 29 100.0 36 NNNNNNNNNN ............................. CAAAGAAGCTCCACCCCATCTGTTTTTTATTATAGC 1706932 29 100.0 36 NNNNNNNNNN ............................. TGTTTTCCATGAACATTTCGAGCTGACTTTTATTGT 1706997 29 100.0 36 NNNNNNNNNN ............................. AACTTCTTGTTTTTTCTTTAAAACACGTACTTGGTC 1707062 29 100.0 37 NNNNNNNNNN ............................. AAATCAATGCCAACTATAGGAACGTCGGGATTAATTG 1707128 29 100.0 37 NNNNNNNNNN ............................. GGAGTATAAGGTAAATCGTAAGCAACTCCAGAAAGAG 1707194 29 100.0 36 NNNNNNNNNN ............................. GAATTACAATATTATCTCCAGCATCAAGACTAGGAT 1707259 29 100.0 37 NNNNNNNNNN ............................. CTGATAGAAAAAGAAGATTATTTGAAAGTTGAGACTA 1707325 29 100.0 37 NNNNNNNNNN ............................. AAAGATTGCAATAGATTTCCTGTTAAAATAGGTACAG 1707391 29 100.0 37 NNNNNNNNNN ............................. ACTGAACCTACTAGCATTGTAGGGTTGAAGTCTACAA 1707457 29 100.0 38 NNNNNNNNNN ............................. TCTTTTTCAAATTGCATAGTTGGTTATACTTATTATAA 1707524 29 100.0 36 NNNNNNNNNN ............................. AAATATGTAAGTTTTAATTTAAAATGATATTCAACT 1707589 29 100.0 36 NNNNNNNNNN ............................. AATATTTAGAGATGGCGTAGAGTGTTAAAAGTTTCA 1707654 29 100.0 37 NNNNNNNNNN ............................. GAAATAATAAATAGCATTGTCGAATGGTTTGCAAGCC 1707720 29 100.0 37 NNNNNNNNNN ............................. TATAGCTAATTATTAGATTCAATTTTAATTTCGTTAA 1707786 29 100.0 37 NNNNNNNNNN ............................. ATTGCAACACTTCATCAGTTGATAAATATAGTATATT 1707852 29 100.0 36 NNNNNNNNNN ............................. TTATACATATTTGTAGCTCCTTGCTGAACTGTTGCA 1707917 29 100.0 38 NNNNNNNNNN ............................. TGGTTAAATCTCCAACAGAACATTTATCTAAATTACAA 1707984 29 100.0 37 NNNNNNNNNN ............................. CTTGTTAATGCAAATAAACAACATAGCACTATTAATA 1708050 29 100.0 38 NNNNNNNNNN ...............T.C........... AGGGTTTCTGATAAAATCTTCAAACATGTAAAATATGT 1708117 29 100.0 37 NNNNNNNNNN ...............T.A........... CTTATACTTAGTTAGAACTATATATCGACACAAATAT 1708183 29 100.0 37 NNNNNNNNNN .C.............TA......A..... TGCAATTTTTATTCGTTGTCCAATCTCTTTGAAATTT 1708249 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 22 29 36 GTTTTATATTAACTAAGTGGTATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA # # Final direction: F [0.91,0 Confidence: HIGH] >NC_013974 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1530358 29 100.0 37 TTATTTTGGT ............................. ACGGGAAAGCTAGAGGGTGTTTGGACTTTAGAGGAAA 1530424 29 100.0 36 TTAGAGGAAA ............................. CGTTCTTGGAATGATAAATATAGAATTGGTTGGATA 1530489 29 100.0 37 TGGTTGGATA ............................. TTTTAAGCTCCACCTTGTCTTAAAAGTTTAAGCAATA 1530555 29 100.0 38 TTAAGCAATA ............................. TATACTTATAGGAGTTGGAATTATAATATTAACTACAA 1530622 29 100.0 36 TTAACTACAA ............................. ATTTGATTTTAATGGTACGTTTTCGCTTTCTCTAAG 1530687 29 100.0 TTTCTCTAAG ............................. TACAACGACT ========== ====== ====== ====== ========== ============================= 6 29 36 GTTTTATATTAACTATATGGAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:82.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [70.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA # # Final direction: R [0,0.27 Confidence: MEDIUM] >NC_013974 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2383230 28 96.4 37 ATCACAGCAA ...........................T GTACCCTGCTAAATTTAATTTATACCGTTGTAGCCGA 2383295 28 100.0 38 TTGTAGCCGA ............................ AAGCATATACACATGTCAGAAGATATTTATAAAAGGAT 2383361 28 100.0 37 ATAAAAGGAT ............................ AAGACTTAACACAGTAACTAAACTGTACATAATTGGT 2383426 28 100.0 39 CATAATTGGT ............................ GATATAATAATGAAACCTTTTTTTAAACTTATTTTCTTT 2383493 28 100.0 37 TATTTTCTTT ............................ GACAGCGAACAAGAGGTTTGGGAGGATGAAAAAAGTT 2383558 28 100.0 37 GAAAAAAGTT ............................ AAATTTTGTAGTAAATTTCTTCATAGCGTCAAAAATT 2383623 28 100.0 GTCAAAAATT ............................ CCCAAAATAA ========== ====== ====== ====== ========== ============================ 7 28 37 TTTACATTCCATATAGTTAATCTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:78.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [78.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA # # Final direction: R [0.27,0.41 Confidence: LOW] >NC_013974 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2629620 29 100.0 39 TTTGGATACA ............................. TTGTGTTTATTGTGATAGTGCCGAACAGGTGTTAATACG 2629688 29 96.6 37 TGTTAATACG ...........................G. TCTAATTTAATAGCTTTATTTTTAGCAAAATACCCAA 2629754 29 100.0 39 AAATACCCAA ............................. CGGTTCCCTCCGAAGTTCATAGAGATTCTTATCAGCATG 2629822 29 100.0 37 TATCAGCATG ............................. AAATGCTGAAAGATAATTCGGTTGGGGATTTAATGAA 2629888 29 96.6 37 ATTTAATGAA ......................G...... TAAATAGAGCAGATGAGGCTTTTCAAGAAGCCGATAG 2629954 29 100.0 37 AAGCCGATAG ............................. TCTGATGTTGTGAGATTTGAAAAAAACGGTAAATTGA 2630020 29 100.0 38 GGTAAATTGA ............................. GCTGATAAAGTTATTAAAAGTAAAATTGCTGAAATACT 2630087 29 100.0 CTGAAATACT ............................. CCCAAAATAA ========== ====== ====== ====== ========== ============================= 8 29 37 ATTTACATTCCATATAGTTAATATAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:82.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA # # Final direction: NA [0,0 Confidence: NA] >NC_013974 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3121923 29 100.0 35 TCTTTATCCT ............................. GTTGTTAGATAAATCATATGCTTTAGTTGCTTTAG 3121987 29 100.0 36 GTTGCTTTAG ............................. ACTTCGAAATTGCAGTTTTCAGCATGTTATTGCGCA 3122052 29 100.0 37 TTATTGCGCA ............................. AAATTCGAGGTCTTGATTTTGAAGTTTTTGGTTATGC 3122118 29 100.0 34 TTGGTTATGC ............................. GGTTTCTACCAATCAAATCACGCATAATTATAGA 3122181 29 100.0 37 TAATTATAGA ............................. AATCATTTTGTATGATTGTTCCATTTTTTTTGAAAAC 3122247 29 100.0 36 TTTTGAAAAC ............................. CTCTGTGACTCCATATTTTTTTGCAATATATAATTC 3122312 29 100.0 37 TATATAATTC ............................. CATTTGTAAATCTTTATGATTATGTAATATATTCATA 3122378 29 100.0 36 TATATTCATA ............................. TTTTTGAATGTTGAAGATTTTGTTAATGCAGGGAAA 3122443 29 100.0 TGCAGGGAAA ............................. CCCAAAATAG ========== ====== ====== ====== ========== ============================= 9 29 36 ATTTACATACCACTTAGTTAATATAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA # # Final direction: R [0,0.27 Confidence: MEDIUM] >NC_014012 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1551643 28 100.0 32 NNNNNNNNNN ............................ AATGATAAAGGCTATGTTCAGTGCACTATCAG 1551703 28 100.0 32 NNNNNNNNNN ............................ TCAGAGGGTTCAACAATGCCAGTAATGAACAT 1551763 28 100.0 32 NNNNNNNNNN ............................ TCTATGGCATCGAGTTGGGATTGAATATCGTG 1551823 28 100.0 1 NNNNNNNNNN ...................A......G. NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 4 28 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [246,912] Score: 0.18/0.18 # # Final direction: F [1.65,0.18 Confidence: HIGH] >NC_014029 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1846213 28 100.0 32 ATTATCTTAC ............................ ATGTTCGACGATTTATTTTATTTGTATTTCAG 1846273 28 100.0 32 TGTATTTCAG ............................ ATTTATTAAAGATGCTGACAAAAAGAACTTAA 1846333 28 100.0 AAGAACTTAA ............................ GTCAACGCTTCACTCCCTGCGCGGGGTATAAC ========== ====== ====== ====== ========== ============================ 3 28 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [496,96] Score: 0.18/0.18 # # Final direction: F [1.69,0 Confidence: HIGH] >NC_013974 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 3468167 20 100.0 97 NNNNNNNNNN ..G...GC...TG.C..... ATTTGCTCCGGTTGGGCCTGTTGGTCCTATCGCTCCTGCTACTCCATTTGCTCCCGTTGCTCCTACTGCTCCGGTTGGGCCTGTTGCTCCATTTGCA 3468284 20 100.0 106 NNNNNNNNNN ......GC...TG.C..... TGTTGCTCCTGCTACTCCATTTGCTCCGGTTGGACCGGTTGGACCTATTGGACCTGCTACTCCATTCGCTCCGGTTGCTCCTACTGCTCCCGTTGGGCCTGTTGCT 3468410 20 100.0 79 NNNNNNNNNN ..AT...CA..TG....... TGTCGCTCCTGTTGGACCTACTGCTCCATCTGCTCCCGTTGGGCCTGTTGCTCCTACTGCTCCGGTTGGACCTATTGCC 3468509 20 100.0 79 NNNNNNNNNN ..A.C..C...TG....... TGTCGCTCCTGTTGGACCTACCAAACCATTTGCTCCGGTTGCTCCCGTTGGGCCTGTTGGGCCTGTTGGACCTACCAAG 3468608 20 100.0 70 NNNNNNNNNN ..ATC.GGA..TG....... TACTGCTCCTGTTGGACCTACCTCTCCATCTGCTCCTGTTGGACCTGTTGCTCCTATTGGGCCTGTTGCC 3468698 20 100.0 70 NNNNNNNNNN ..A...G....TG....... AGTCGCTCCTATACTTCCTGTTGGACCTGTTGCTCCTGTATTTCCTGTTGGGCCTGTAGCACCTGTTACT 3468788 20 100.0 34 NNNNNNNNNN ..AT..GC...GG....... TGTATTTCCTGTTGGACCTGTTATTCCATTTGCT 3468842 20 100.0 52 NNNNNNNNNN ..G...GC...GG....... AGTTAGTCCGGTTGGACCTGTTGCTCCTGTTGCTCCTGTATTCCCTGTTGGT 3468914 20 100.0 34 NNNNNNNNNN .................... AGTCGCTCCTGTATTTCCTGTTGGTCCTGTAGAG 3468968 20 100.0 25 NNNNNNNNNN .................... GGTTGCTCCTTTGTTTCCTGTTGGT 3469013 20 100.0 25 NNNNNNNNNN .................... GGTTGCTCCTGTATTCCCTGTCGGA 3469058 20 100.0 34 NNNNNNNNNN ..............C..... AGTCGCTCCTGTATTTCCTGTTGGTCCTGTAGAA 3469112 20 100.0 25 NNNNNNNNNN ......G.........G... AGTCGCTCCCATATTTCCTGTTGGA 3469157 20 100.0 25 NNNNNNNNNN ..C...........C..... AGTTGCTCCCGTATTTCCTGTTGGT 3469202 20 100.0 34 NNNNNNNNNN .................... GGTCGCTCCGGTTGCACCTCTAGGCCCCGTCGGT 3469256 20 100.0 1 NNNNNNNNNN ......GGA...G.A..A.. NNNNNNNNNN ========== ====== ====== ====== ========== ==================== 16 20 52 CCTGTTATTCCATTTGCTCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [30-11] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA # # Final direction: R [0,0.68 Confidence: HIGH] >NC_014010 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 40 36 100.0 30 NNNNNNNNNN .................................... CGTGGTGGTCTCAAGCAGATAAACCCTTCC 106 36 100.0 30 NNNNNNNNNN .................................... TGACCGCTTGATATCGCATCACCGCACGGC 172 36 100.0 30 NNNNNNNNNN .................................... GTAACGCCATTGTGCCGCAAGTCGCGGCGC 238 36 100.0 30 NNNNNNNNNN .................................... ATGAGCAGAATTCATTTATCACTTTGACTT 304 36 100.0 30 NNNNNNNNNN .................................... TGAATATACCTAATCGTTCACTGCCATCTA 370 36 100.0 30 NNNNNNNNNN .................................... GGTAATGATGTCCACATGTCCAACTGCGTC 436 36 100.0 30 NNNNNNNNNN .................................... CGTGCGGGCTTCATAGAACCGGATCGATCC 502 36 100.0 30 NNNNNNNNNN .................................... TATGCCAAGGCACTATCGGCTGAGGCACAA 568 36 100.0 29 NNNNNNNNNN .................................... ACTATAAGGCAACACAACAAATCGATGTT 633 36 100.0 30 NNNNNNNNNN .................................... TATGGCGGCGGGCGGCGTTCAACTGACAGC 699 36 100.0 30 NNNNNNNNNN .................................... ATAAAATCGCGTGACGAAAAGAAAACACTA 765 36 100.0 30 NNNNNNNNNN .................................... TGAAAGTTGGTGTGCCTGCCGTCCTTGGCC 831 36 100.0 30 NNNNNNNNNN .................................... TGGTGGACAGATATAATACCTGTCATCATG 897 36 100.0 30 NNNNNNNNNN .................................... GAAGGACAGGTAGTGCCGCCAGCCCCTGAA 963 36 100.0 30 NNNNNNNNNN .................................... AAGAACGGCGCAAGACCTTATAGCTTTCAT 1029 36 100.0 30 NNNNNNNNNN .................................... TCAACAGCTTTAGACCATTTATCACCGATT 1095 36 100.0 30 NNNNNNNNNN .................................... CGTTGGACGGTAACGTCCAATAATTTATAT 1161 36 100.0 30 NNNNNNNNNN .................................... ACTGGCAATTTATCGGACAAACTGAAATGG 1227 36 100.0 30 NNNNNNNNNN .................................... AGTTGCAGGGCTTCCAATCCGAATGGGCAG 1293 36 100.0 31 NNNNNNNNNN .................................... TCAATAGGTACTGCTGGTTACGAAGCGTCAA 1360 36 100.0 30 NNNNNNNNNN .................................... CAATCGCTTGGTCTACTTAAGACTTCTGGT 1426 36 100.0 30 NNNNNNNNNN .................................... CGGTGATCCTAAAAATCCAGCTCGTTTGGG 1492 36 100.0 30 NNNNNNNNNN .................................... TTCCGATTCAGACGATCCACCGTCGCCAGA 1558 36 100.0 30 NNNNNNNNNN .................................... TGGATTGAGCTTGATCCTGCGCGCGATATC 1624 36 100.0 31 NNNNNNNNNN .................................... TTACCCGCTACTTCCTGAAAGAATGCCAGTT 1691 36 100.0 30 NNNNNNNNNN .................................... CGATCCCTCGATGATGGGTTGACCGCCGAA 1757 36 100.0 1 NNNNNNNNNN .............................CCC.CCA NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 27 36 30 AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.10,-5.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [15.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [41,14] Score: 0/0.18 # # Final direction: R [0.41,0.64 Confidence: LOW] >NC_014011 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 112500 36 100.0 35 NNNNNNNNNN T.TTG............A............C..... CGTCGAGAATGTGCAGCACAAAACAACTTGTGCCG 112571 36 100.0 34 NNNNNNNNNN .................................... AAGGAACCCTTTTTACCCATGCCGACATGAGCCA 112641 36 100.0 36 NNNNNNNNNN .................................... TTTGATAAGGTTTTGATGTATGCAGGAACACATCCG 112713 36 100.0 35 NNNNNNNNNN .................................... ATCCTGCCAACCAGAGGATGAAATGTATTCTATTT 112784 36 100.0 34 NNNNNNNNNN .................................... TTTGTGCGAGAGATATCCTTTCCTGCATTCCAGA 112854 36 100.0 36 NNNNNNNNNN .................................... TTATTTGTTCGCGTGGCGTTAGGACTTCCTCGTATA 112926 36 100.0 35 NNNNNNNNNN .................................... GAGCGGTTCCAGTATTGCTCTTCTCTTGCTGAGCG 112997 36 100.0 34 NNNNNNNNNN .................................... ATCAAAACAGCCTCCCTATCAAAACACCCCTGCA 113067 36 100.0 34 NNNNNNNNNN .................................... ATACTCTCCTTGCCGCTCTTAAGGCTGCTGGACT 113137 36 100.0 35 NNNNNNNNNN .................................... TGTTTGGGAAGAGTTGCGGTTGATAGTGGTCAGCT 113208 36 100.0 34 NNNNNNNNNN .................................... CTGTTAGTGATTCCAACCAATTCCCCCACCACTG 113278 36 100.0 35 NNNNNNNNNN .................................... AAAATTATTAGCGTAGAAAATAACATAATGAGCTT 113349 36 100.0 36 NNNNNNNNNN .................................... TCTATAGGTGGCGACATTACTCCATTTGTTCCACGT 113421 36 100.0 34 NNNNNNNNNN .................................... ATGGAATGCAGGCAGGCGAAGCCGCGGGAAAAAG 113491 36 100.0 36 NNNNNNNNNN .................................... CAGATAAAGAGAGACTGCCCTTTTTGTAAACTCCAA 113563 36 100.0 37 NNNNNNNNNN .................................... AACGCGTGGACAACCTCACGGTAAATCAGGCAAAAGA 113636 36 100.0 37 NNNNNNNNNN .................................... CTGCCGATAAAACTCGTGATTTTGGTGTATTGCAGTA 113709 36 100.0 35 NNNNNNNNNN .................................... GTAATTAACATCTACGTCTTTTACTTTTCCACCTG 113780 36 100.0 34 NNNNNNNNNN .................................... GAAGAAAACAGGCATGAGGCATATTTGCTTTATT 113850 36 100.0 38 NNNNNNNNNN .................................... ATCTCACTCATATTTATGAATAAAACCATTGACTTTTT 113924 36 100.0 35 NNNNNNNNNN .................................... TCCATCAAGGCTGACATCGCAACCCTTAAAAAGTT 113995 36 100.0 36 NNNNNNNNNN .................................... AAATATGTTTCTATATTCCCTTCCTTGGGGTCCCTG 114067 36 100.0 34 NNNNNNNNNN .................................... ATTTACAAAAGTTCGCTTCTATCTTCAACTGCAC 114137 36 100.0 35 NNNNNNNNNN .................................... CTCATTTGAGAGAAAAGATCCACTACACCCTGTGT 114208 36 100.0 35 NNNNNNNNNN .................................... AAGTAAACCGGTATTTTTTTCATAAAATCACCCTC 114279 36 100.0 35 NNNNNNNNNN .................................... TTCAGATTCTCAAGCGCACGGACTTCGTTGATAGA 114350 36 100.0 35 NNNNNNNNNN .................................... ACGCCCACAAGCACATATTTCAGGAATTGCGCTTT 114421 36 100.0 35 NNNNNNNNNN .................................... GTGGTAGGCAATTTCCCAGAACACCAGAGTATTTT 114492 36 100.0 36 NNNNNNNNNN .................................... CGAAGCTGTCTACAAAGGGCTCATCGCTGCCTAGGT 114564 36 100.0 36 NNNNNNNNNN .................................... TTTCAGGTGTTTCTTCAAGTCCAATTTGCCCTTCAA 114636 36 100.0 35 NNNNNNNNNN .................................... CTGGGGGAGCGAGTAGATACAGGGGGGGCCATCTA 114707 36 100.0 37 NNNNNNNNNN .................................... ATTGTCAGAGGCTGTGGAGCAAACTTTGCAAAAGGCA 114780 36 100.0 35 NNNNNNNNNN .................................... ATAGCTGAGGATTTCAGATCTCAAGTCCCCGTACG 114851 36 100.0 37 NNNNNNNNNN .................................... ATAGTTCCCCAGTAAGCCCTTTCGCCTGCTGGCTGAT 114924 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 35 36 35 GTGCTCAACGCCTTACGGCATCAGAGGTTATATCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [9,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.60,-7.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [56,160] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_014012 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 1551640 31 100.0 29 TGCGCATCAT ............................... AATGATAAAGGCTATGTTCAGTGCACTAT 1551700 31 96.8 29 AGTGCACTAT ..G............................ TCAGAGGGTTCAACAATGCCAGTAATGAA 1551760 31 100.0 CAGTAATGAA ............................... TCTATGGCATCGAGTTGGGATTGAATATCGTG ========== ====== ====== ====== ========== =============================== 3 31 29 CATGTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [9,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-9.00,-9.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [243,972] Score: 0.18/0.18 # # Final direction: F [0.78,0.55 Confidence: LOW] >NC_014012 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 3459868 32 100.0 42 NNNNNNNNNN G.CA......TACCGAGT.............. CACGAGATTGCCGGACATTTTCTGTAGTAGCTGAATAGTTAA 3459942 32 100.0 54 NNNNNNNNNN ................................ GATGAGATTGCCGGACATCTTTTCTATTACCCAACGTTACTAAGACCAAGCTAT 3460028 32 100.0 42 NNNNNNNNNN .A...C.......................... CACGAGATTGCCAGACATTTTCTGTAGTAGCTGAATAGTTAA 3460102 32 100.0 1 NNNNNNNNNN ................................ NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 4 32 46 AGGTTGAGATCTTTTTCCATCTCTTCATAGGA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.50%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.10,-5.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [11-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [345,773] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_014025 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================== ====== 51459 22 100.0 86 NNNNNNNNNN ...AT...T.....T..C.... TCACTGGGGCTACTGGAGCAACGGGAGCTACCGGAGTCACTGGAGCTACTGGAGCTACTGGAATTACTGGAATTACTGGAATTACT 51567 22 100.0 95 NNNNNNNNNN ...AT...T.....T..C.... TCACTGGAGCTACTGGAATTACTGGAATTACTGGAATTACCGGAGTCACTGGGGCTACTGGAGCAACGGGAGCTACCGGAGTCACTGGAGCCACT 51684 22 100.0 77 NNNNNNNNNN ...ATC..T...GCT..C.... TTACCGGAGTCACGGGAGTTACTGGAATCACTGGAGTCACTGGAGTGACTGGAGTTACCGGAGTCACGGGAGCTACC 51783 22 100.0 77 NNNNNNNNNN ...ATC..T...G.T....... AAACTGGAGTTACTGGAGAAACGGGAGCTACCGGAGTCACTGGAATCACTGGAGCTACTGGAATCACTGGAGTGACG 51882 22 100.0 77 NNNNNNNNNN ...ATC..T...GCT..C.... TCACTGGAGTGACTGGAGTTACCGGAGTCACGGGAGCTACCGGAATCACTGGAGTTACTGGAGAAACTGGAGTTACT 51981 22 100.0 59 NNNNNNNNNN ....AA..G...GCT..C.... TCACTGGAATCACTGGAGCTACTGGAATCACTGGAGTGACGGGAATCACTGGAGCTACC 52062 22 100.0 77 NNNNNNNNNN ....TC..G...GCT..C.... TTACTGGAATTACCGGAGTTACTGGAATTACCGGAGTTACTGGAGTGACTGGAGTTACCGGAATCACTGGAGTGACA 52161 22 100.0 59 NNNNNNNNNN .....C..T...GCT..C...A TCACTGGAGCTACTGGAGCTACCGGAATTACCGGAGTTACTGGAATTACCGGAGTTACT 52242 22 100.0 68 NNNNNNNNNN ....TG..T...G.T..C...A TCACTGGAGTGACAGGAGCCACTGGAGCTACCGGAATCACTGGAGCTACTGGAGCTACCGGAATCACT 52332 22 100.0 41 NNNNNNNNNN ....T...T...GCT..C...A TCACTGGAGCTACCGGGATCACTGGAGCTACCGGAGTCACT 52395 22 100.0 68 NNNNNNNNNN ....T...T...G.T..C.... TCACGGGAGCTACCGGAGCTACCGGAATCACTGGAGCTACCGGGATCACTGGAGCTACCGGAGTCACT 52485 22 100.0 68 NNNNNNNNNN ........T...G.T..C.... TCACGGGAGCTACCGGAGCTACCGGAGTTACCGGAATCACTGGAGTCACTGGAGTCACGGGAGCTACC 52575 22 100.0 23 NNNNNNNNNN ....T...T...G.T....... TCACTGGAGTCACTGGAGCTACC 52620 22 100.0 59 NNNNNNNNNN ....T...T...G.T......A TTACTGGAATTACCGGAGTGACTGGAGTTACCGGAATCACTGGAGTGACAGGAGCCACT 52701 22 100.0 41 NNNNNNNNNN ........T...G......... CTACTGGAGTTACCGGAGTCACGGGAGCTACCGGAGCTACC 52764 22 100.0 23 NNNNNNNNNN ....T................. TTACTGGAGCTACCGGAGTCACG 52809 22 100.0 23 NNNNNNNNNN ...................... CTACCGGAATCACTGGAGCTACT 52854 22 100.0 23 NNNNNNNNNN ...................... TTACTGGAGCTACCGGAGTCACG 52899 22 100.0 23 NNNNNNNNNN ...................... CTACCGGAGTCACTGGGGCTACT 52944 22 100.0 32 NNNNNNNNNN ...................... TGACAGGAGCCACTGGAGCTACCGGAGTTACT 52998 22 100.0 41 NNNNNNNNNN ....T...T............. TCACTGGAGTTACTGGAATTACCGGAGTTACTGGAGTGACT 53061 22 100.0 32 NNNNNNNNNN ....T................. TGACAGGAGCCACTGGAGCTACCGGAGTTACT 53115 22 100.0 41 NNNNNNNNNN ....T...T............. TCACTGGAGTTACTGGAATTACCGGAGTTACTGGAGTGACT 53178 22 100.0 50 NNNNNNNNNN ....T................. TGACAGGAGCCACTGGAGCTACCGGAATCACTGGAGCTACTGGAGCTACT 53250 22 100.0 23 NNNNNNNNNN ...................... TGACTGGAGCTACCGGAATCACT 53295 22 100.0 1 NNNNNNNNNN ....TG..T...G.......G. NNNNNNNNNN ========== ====== ====== ====== ========== ====================== 26 22 51 GGAGCTACCGGAATCACTGGAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [50-11] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [979,496] Score: 0/0.18 # # Final direction: R [0.37,0.68 Confidence: LOW] >NC_014029 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2951925 28 100.0 33 TTATCTTACT ............................ CTGATACAATCATCCTATTTGTCCTATCCAGAA 2951986 28 100.0 32 CTATCCAGAA ............................ GACAAGAACCGAATCTTTCGCCGTGCCGTAAA 2952046 28 100.0 33 GTGCCGTAAA ............................ CCGAAATCATCAGATGTAATTAAGATTTTTGCT 2952107 28 100.0 GATTTTTGCT ............................ AGACTGATGCAAGATGGCGGTATGCGTACAGA ========== ====== ====== ====== ========== ============================ 4 28 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [362,65] Score: 0.18/0.18 # # Final direction: F [1.69,0 Confidence: HIGH] >NC_014029 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2721665 28 100.0 32 NNNNNNNNNN ...GATTAT................... TCAGGGGACTGGCGAACAATGTCTTTCATGAT 2721725 28 100.0 32 NNNNNNNNNN ............................ GAAAAGGTAAGATGGGCAAGCTTCTAGTAGTT 2721785 28 100.0 32 NNNNNNNNNN ..................A......... ATTATCTGAATGGCATTTTCTTTGGCGCAGAT 2721845 28 100.0 32 NNNNNNNNNN ............................ TCGCCATTCCGTGAACCTGAGCGCGTTCGCGA 2721905 28 100.0 32 NNNNNNNNNN ............................ ATATTCTCGAGCGATAGCAATAGCCATTCCAC 2721965 28 100.0 32 NNNNNNNNNN ............................ TCGGTCAAACAAATTTAGGCGACGATTTAACA 2722025 28 100.0 32 NNNNNNNNNN ............................ AAAAAGAATTTGGGATTAAAGTTACCCATCAG 2722085 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 8 28 32 TTTCTAAGCTGCCTGTGCGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [361,339] Score: 0/0.18 # # Final direction: R [0,1.42 Confidence: HIGH] >NC_014033 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1568935 36 100.0 30 NNNNNNNNNN ACGA.T.T.A..C.T..................... CGCCGCAATGCTTTCTACTTTGTGCGTGCA 1569001 36 100.0 30 NNNNNNNNNN .................................... CAGAATCCCAAAAGAGCAAAAAAGTAAAAA 1569067 36 100.0 30 NNNNNNNNNN .................................... GTGGATGGTGCGCCAGCTGCAAGGGGACGG 1569133 36 100.0 30 NNNNNNNNNN .................................... CACGTGTCGGCCACCCTTCCACACGCCCTC 1569199 36 100.0 30 NNNNNNNNNN .................................... ATAACTATAAGAAAGCCCAGAAGGGTGGTA 1569265 36 100.0 29 NNNNNNNNNN .................................... TCACCACATCACCATTCTCGTCACGCTCA 1569330 36 100.0 30 NNNNNNNNNN .................................... CGCCTTGATGGTGATGCTGTCGTGCAGATA 1569396 36 100.0 30 NNNNNNNNNN .................................... TGGGTTCTTCCACACCATGCAGAGCGATAT 1569462 36 100.0 30 NNNNNNNNNN .................................... ACGGGCACCGCGACAAGCAGAGCGGTTGGA 1569528 36 100.0 29 NNNNNNNNNN .................................... TAAAGGTTAGCAACTCCCTCCATTTTTTT 1569593 36 100.0 30 NNNNNNNNNN .................................... ATTGATGGTGTTCCACCATTGACTGAGCAA 1569659 36 100.0 30 NNNNNNNNNN .................................... CTACTACAAAACCCTGCAATATCAGTGCGA 1569725 36 100.0 30 NNNNNNNNNN .................................... GATACCGCCACCACTCTCTGACGCATCGTC 1569791 36 100.0 29 NNNNNNNNNN .................................... TGCGTCTGCCAGGTATGCCCACCATGCGC 1569856 36 100.0 29 NNNNNNNNNN .................................... CAGTCCCAGTTGCTCGCGCAGTTGGTCGC 1569921 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 16 36 29 GTTGTATATCATTCCTTTCCTACATCAAACCACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.89%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [86,94] Score: 0/0.18 # # Final direction: R [0,0.41 Confidence: MEDIUM] >NC_014034 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1349552 37 100.0 33 CAGAGGGTGA ..................................... GTCGATCCGGTCTCAAGCTGCGCCTGCGTCACG 1349622 37 100.0 35 CTGCGTCACG ..................................... ACGGGGGCGGCGGCGAGGCAGGCGAAGGCGGCGGC 1349694 37 94.6 AGGCGGCGGC .......C.............A............... TGCGTCACCTC ========== ====== ====== ====== ========== ===================================== 3 37 34 GCCCAGATACCTCTCCCGCCAGTAAGCGGATTGAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [9,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.70,-8.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [269,203] Score: 0/0.18 # # Final direction: F [1.05,0.37 Confidence: MEDIUM] >NC_014034 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================================== ====== 1356300 38 100.0 31 CAGAGGGTAA ...................................... CCCAGAACAGGTGTTTGAGCGGCCCACCCGC 1356369 38 97.4 32 GCCCACCCGC .....................................G AATGACAGCAACGTACAGCATCGTTTGCCTTT 1356439 38 100.0 GTTTGCCTTT ...................................... TGCCCTATTCAA ========== ====== ====== ====== ========== ====================================== 3 38 31 GCCCAGACACCTCTCCCGCCAGTAAGCGGATTGAGACA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [10,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.70,-8.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [46.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [349,51] Score: 0.18/0.18 # # Final direction: F [1.23,0.37 Confidence: MEDIUM] >NC_014034 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1358648 37 100.0 34 CAGAGGGTAA ..................................... TCTTCCATCGAGCACTTGCAACCAAACACCCCGT 1358719 37 100.0 34 AACACCCCGT ..................................... CTCCTTTCTCCACCCCGCGGGGTGTGCGCACGTG 1358790 37 100.0 37 TGCGCACGTG ..................................... GGGCGTATTCACGGCCCACCAACGCCCCCCATGCGGT 1358864 37 100.0 CCCATGCGGT ..................................... GGAAGATTTTCGGTCATCTTACGCGATCCGCATA ========== ====== ====== ====== ========== ===================================== 4 37 35 GCCCAGACACCTCTCCCGCCAGTAAGCGGATTGAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [9,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.70,-8.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [145,66] Score: 0.18/0.18 # # Final direction: F [0.55,0.37 Confidence: LOW] >NC_014034 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1395365 32 100.0 37 NNNNNNNNNN ................................ TGCACCCGCTGGCCCTGCCGGTGATCGGTGATCAGCG 1395434 32 100.0 34 NNNNNNNNNN ................................ ATCGCCGCTTTGGCGGTCGACAGGCTGGTAACGT 1395500 32 100.0 35 NNNNNNNNNN ................................ ATCTCGGTGCCGTCGCTCGTCCAGCCGGCCTGCTC 1395567 32 100.0 34 NNNNNNNNNN ................................ CACCTTGCGGATTGTCACTTTCGCGGGGCGAAGC 1395633 32 100.0 34 NNNNNNNNNN ................................ ATCTGCATGTAGTCGGCGGGCAGTTCGAGCCGCA 1395699 32 100.0 33 NNNNNNNNNN ................................ TGGTATGGATCTGGCGCAAACGGAAAGTCTGTC 1395764 32 100.0 36 NNNNNNNNNN ................................ CTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGAC 1395832 32 100.0 35 NNNNNNNNNN ................................ TGCGCCGCCTATCGCATCCGGTCGAGCGCCGCGCA 1395899 32 100.0 34 NNNNNNNNNN ................................ GATGCGTTCATGGCCTACGTCGGGCAGTGGACTG 1395965 32 100.0 35 NNNNNNNNNN ................................ TCGCCCTCGATCCGCGCTTGCCTCACGCCTGCCGC 1396032 32 100.0 35 NNNNNNNNNN ................................ AGGCGCATCTGATGTATATGCCCGGTGAGACGGCT 1396099 32 100.0 36 NNNNNNNNNN ................................ TTTTCGTCATCTGGCAGGCTCGCGCCGCCACGCTGC 1396167 32 100.0 36 NNNNNNNNNN ................................ CCGGCGAAAAACGGCCATGCCTCCGGGTGTCTGGCT 1396235 32 100.0 35 NNNNNNNNNN ................................ AGCAGGTCAGCCGCGGCCCCGGTGAACTTCTGTTC 1396302 32 100.0 36 NNNNNNNNNN ................................ AAGCAGTGGGGTGAGTGGGCTGACCAGACAAACGCT 1396370 32 100.0 36 NNNNNNNNNN ................................ CGCGCCCTGCGGGTGATGGCGACGGGCACCACGGCG 1396438 32 100.0 37 NNNNNNNNNN ................................ GGACCTGAAATTCCGCGGGAAACGCGGCGGCGAGCAC 1396507 32 100.0 34 NNNNNNNNNN ................................ TGCTTTCGTGGGACTGGCCAGCCGCCCGCGCCAA 1396573 32 100.0 34 NNNNNNNNNN ................................ GATTTCGTCGCTTACGACGCCTATCTGATTTCGG 1396639 32 100.0 35 NNNNNNNNNN ................................ CATGCGGCGATAACTCGCTCTTGCGATCCGTCATC 1396706 32 100.0 33 NNNNNNNNNN ................................ CCTGTCCCTCATATGCTGCCACGATGCCCTTGA 1396771 32 100.0 33 NNNNNNNNNN ................................ CGTGTGGATGATCATGCAGCGCGGACGGCTTGG 1396836 32 100.0 35 NNNNNNNNNN ................................ CGGTCCAGAGATAGACCGCGCGGACCTCCTCAGAC 1396903 32 100.0 34 NNNNNNNNNN ................................ AGCCTGCGCGGCCGCATCGGCTTCCGCCTGCGTG 1396969 32 100.0 33 NNNNNNNNNN ................................ ATCAGCTCGTCGTTGGTCAGCCGGACGATGTCC 1397034 32 100.0 34 NNNNNNNNNN ................................ TGCCGTCTTGAGTGATGGGGCGCGAGCACATGTC 1397100 32 100.0 35 NNNNNNNNNN ................................ GTCCAGCTCGCGCCACATGTCTTCGACCGTGCGCC 1397167 32 100.0 35 NNNNNNNNNN ................................ GTGTCTGCCACGACGCCCTGCACCAGATCCGCGCC 1397234 32 100.0 35 NNNNNNNNNN ................................ ACCGCGCACGCGCGAACGGCGTCAGCCCCGCGAAC 1397301 32 100.0 35 NNNNNNNNNN .................A.............. GGCTTTACAGCCTTCGCGCCCCACGCCAGACGGAC 1397368 32 100.0 34 NNNNNNNNNN ................................ TCTTCAATGGATATGGCAAAACCGTCCGCGACAT 1397434 32 100.0 34 NNNNNNNNNN ................................ ACCGTCATCACCACGCAACCGCCCTGCACCACCG 1397500 32 100.0 35 NNNNNNNNNN ................................ AACCCGATCATGGCCCGCCTCAGCGCCGCGCTGAC 1397567 32 100.0 34 NNNNNNNNNN ................................ ATCCGCGGATCGGCGTGACCCGCCCCGCCCATCG 1397633 32 100.0 35 NNNNNNNNNN ................................ TACAGAGTTCCGGTCTTGTTCTGTTCCGGTAACAG 1397700 32 100.0 34 NNNNNNNNNN .................C.............. TTGTCTGACGCGCTCATCAGCACGTCAAGATTCA 1397766 32 100.0 38 NNNNNNNNNN ................................ GGTGTCCAGCGTCACATGCAGCGGCGTCGCATCGCCAT 1397836 32 100.0 35 NNNNNNNNNN ................................ CCGGCACCTCAGCCCCGCCCGCTGTCTCACCAACA 1397903 32 100.0 36 NNNNNNNNNN ................................ TCTATGGGAGGCTAGGGAGGCTACGCACCTTCAAAA 1397971 32 100.0 34 NNNNNNNNNN ................................ CGCCGCGCAAAAAGCCCGCCAAGAAGCGGAGCAA 1398037 32 100.0 1 NNNNNNNNNN ............................T..G NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 41 32 34 GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [4,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-9.20,-9.20] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [178,1527] Score: 0.18/0.18 # # Final direction: F [0.41,0.18 Confidence: MEDIUM] >NC_014041 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1642261 37 100.0 36 NNNNNNNNNN ..................................... GACCCGTTTGAAAGCCCTATCGATTATTATATGTTA 1642334 37 100.0 36 NNNNNNNNNN ..................................... CAAGTTTGCCGAAGATCATAGTTTAAATAGTTGGGA 1642407 37 100.0 36 NNNNNNNNNN ..................................... ACGGCATTTGGCAACAAAGACCACGATGGCGATATA 1642480 37 100.0 36 NNNNNNNNNN ..................................... TAGGTGTGCGCTGAATTTTTACAGAAATAAGGTAAT 1642553 37 100.0 37 NNNNNNNNNN ..................................... CAATGCTGACGGCAGCTTTAATTTTCCTGAATACAGA 1642627 37 100.0 34 NNNNNNNNNN ..................................... AATATCTTATCGGTTGGCCGTGCACCGCGTCCTA 1642698 37 100.0 35 NNNNNNNNNN ..................................... CGTACGTTATCCGCATCTTGTTCAAAGAATCTAAT 1642770 37 100.0 38 NNNNNNNNNN ..................................... TATCTGAATGTTAATCCGGTTTCTTTTCCTATTTTTTT 1642845 37 100.0 36 NNNNNNNNNN ..................................... AGTGTACGTTTGGTTCGTTGTTATTCTCATTATTAT 1642918 37 100.0 36 NNNNNNNNNN ..................................... AAAGATTATTCTCTATCCTTGAATATTCTGTAATAG 1642991 37 100.0 37 NNNNNNNNNN ..................................... TTAAACAATATATAACACTCCTTCAAAGGGGTTCGGA 1643065 37 100.0 36 NNNNNNNNNN ..................................... GAGATGGTTTGAACTTCCTTCATGGCATGCTCAAAC 1643138 37 100.0 39 NNNNNNNNNN ..................................... GAAACACTTGCTATATCAAATATTGCAGGGCTTCAAAAT 1643214 37 100.0 36 NNNNNNNNNN ..................................... GAATTAGATGATGAAATAGTAGACCTAGACGAAGAT 1643287 37 100.0 35 NNNNNNNNNN ..................................... AAAACCGTTCTTCAAAAACCGTTTCCCACAAAACC 1643359 37 100.0 36 NNNNNNNNNN ..................................... CCAGATATTACCACTTTTTACGGCTTTTAAGTTGAA 1643432 37 100.0 36 NNNNNNNNNN ..................................... GCTATCTCTCCTAATTCTATCGAATCTACTATTTTT 1643505 37 100.0 36 NNNNNNNNNN ..................................... TATTTTTCTTCTTGAGCTCTTAAATTTTCTATAACT 1643578 37 100.0 36 NNNNNNNNNN ..................................... TCCCTTCTATGATACGGTATATCTTCACAATCGCAG 1643651 37 100.0 37 NNNNNNNNNN ..................................... ATTTTTCGGCCTTTCCTAATCAAAAGCACCTCATGGT 1643725 37 100.0 36 NNNNNNNNNN ..................................... GTTGCTCTTTTTGTTCTTCCAGATCCTTAGCGGTCT 1643798 37 100.0 37 NNNNNNNNNN ..................................... AAAAGTTAGGTTCTATAGGTGGGCTTGCATTGGGATT 1643872 37 100.0 35 NNNNNNNNNN ..................................... TTAGATGATAAATTTATTTTCGAAGAAGTAGACCA 1643944 37 100.0 35 NNNNNNNNNN ..................................... TAACGAAGCAGTACAGGGAGTCTACTTATATTATG 1644016 37 100.0 35 NNNNNNNNNN ..................................... CTTTATGCTCTGTATTAATATCATCGATAAGTTGT 1644088 37 100.0 37 NNNNNNNNNN ..................................... GCGATAAGTTAGGATAAAACTGTTTTCCCTTTTCTAA 1644162 37 100.0 36 NNNNNNNNNN ..................................... ACGCCGTCGCTTATTCTAGCCGGTAGCTTTATATGC 1644235 37 100.0 36 NNNNNNNNNN ..................................... TTTATATGTTTTTTGCGTCTGCATTGAGTGTATATA 1644308 37 100.0 36 NNNNNNNNNN ..................................... GTTAGTTTTGATTTTGAAACCACGGGAGTGGATCCG 1644381 37 100.0 37 NNNNNNNNNN ..................................... GCCGTAACGCCTTCGTTTCTTCGTGGCCTAAACTCAA 1644455 37 100.0 37 NNNNNNNNNN ..................................... AGGAACGCTATTAAATCGTTTCTTTGCTTTAATAGCT 1644529 37 100.0 36 NNNNNNNNNN ..................................... CTACTATGATGTAAGTACATATTAAAAGCCCCGTTA 1644602 37 100.0 37 NNNNNNNNNN ..................................... ATATTGGTGTTAATGTCTCCATACTATTCACGTTTTT 1644676 37 100.0 36 NNNNNNNNNN ..................................... TCTGTAAAGCAACGGTAGACAAAGGTAGTGAAACCT 1644749 37 100.0 36 NNNNNNNNNN ..................................... TTCTTTTGCCTCTAACAAGCTTTCGGCTACTTGGGA 1644822 37 100.0 37 NNNNNNNNNN .................T................... GAAGATCGATATGCAAAAACAGTTTATTATTATGAAA 1644896 37 100.0 35 NNNNNNNNNN .................T................... GAAATAATGTGTGAATCGGATCCTTCTTCTAAAGA 1644968 37 100.0 36 NNNNNNNNNN .................T................... GATATTCCGTAGTTTCAACAAAGCTTTCCGGCTTTT 1645041 37 100.0 36 NNNNNNNNNN ........G........TG..A............... AAGAGGTGGGGCGATGCAAGAATGTACTATGATAAA 1645114 37 100.0 36 NNNNNNNNNN ..................................... GAACAACAAATTGAAGGAGATAGTAATAAGGATAAT 1645187 37 100.0 37 NNNNNNNNNN ..................................... TTCTTTTGAAGATGAATGTTTAGCTTTTGCTAAGTGT 1645261 37 100.0 36 NNNNNNNNNN ..................................... ATCGAATCAAGGTTGACGCGGTGGTCATAAATGACT 1645334 37 100.0 36 NNNNNNNNNN ........G........TG..A............... TTCGCTGTTCCGGTAATTGTTTTATTTGAATATTAC 1645407 37 100.0 37 NNNNNNNNNN ........G........TG..A............... ACGGTAGATTTGTTGGCATCGGCATTCCCCATTAAAT 1645481 37 100.0 35 NNNNNNNNNN ........G........TG..A............... TCTGAATGTTCTTAAAATAGATCATTTCCATTTCT 1645553 37 100.0 38 NNNNNNNNNN ........G........TG..A..............T CAACAACAAAGATGGCGTTGATCTTTTGAGCGTTTCCC 1645628 37 100.0 37 NNNNNNNNNN ........G.........G..A..............T AATGAAAACATTACTACGCACTTTGTAGGAAAAGAAG 1645702 37 100.0 36 NNNNNNNNNN ........G.........G..A..............T CGCCCCAGCCTTGCTGATTCTCTTTGCTAAACTGTG 1645775 37 100.0 36 NNNNNNNNNN ........G.........G..A............... GAATCCGGATGCCATTTTTCTAAGGCTGCCTTAGTT 1645848 37 100.0 36 NNNNNNNNNN .................TG..A............... GAAGCAACTGCTTCTGAAGATACACAAGATGAAGGA 1645921 37 100.0 36 NNNNNNNNNN ........G........TG..A............... TTTTGCCACTGGTTCCCGGCATCTTCAACAAAAAGA 1645994 37 100.0 36 NNNNNNNNNN ........G........TG..A............... TAGGTAGGGAAGAGCTTAAGAGAATTAAGAAGTCTA 1646067 37 100.0 37 NNNNNNNNNN G................TG..A............... CGGAAGAGATAGAGAGAACAGCGAAAGCCGGAAGAGA 1646141 37 100.0 35 NNNNNNNNNN G................TG..A............... TCACTCAAAGAACTCTATTTAAAAAAGCCCTACAG 1646213 37 100.0 36 NNNNNNNNNN G.................................... GGAGATTATTCCGAAAGAAAATATCAGATACTTTCA 1646286 37 100.0 36 NNNNNNNNNN ........A............................ TTGGCGTTACCCTTTTCGGGGATTCCTACAGATTAG 1646359 37 100.0 36 NNNNNNNNNN ........A............................ CGATCTACCAACGTGCCTTTTAGATTGATAAAATTA 1646432 37 100.0 37 NNNNNNNNNN ........A............................ AGGTTAAACTGTATATTCAAGCCATCAGCGTTGAAGT 1646506 37 100.0 36 NNNNNNNNNN ........A............................ CGATCTACCAACGTGCCTTTTAGATTGATAAAATTA 1646579 37 100.0 35 NNNNNNNNNN ........A............................ ACAGAGATAGATAAAAAAACGGGCCTGGTTGATAT 1646651 37 100.0 36 NNNNNNNNNN ........A............................ TAAAGCAATGATGTATGATGGATATGGATATCCATT 1646724 37 100.0 36 NNNNNNNNNN ........A............................ TGATATCGTAATTATTTTTGTATTCAGTTAGTTTTG 1646797 37 100.0 37 NNNNNNNNNN ........G........TG..A............... ATGGAAATCCTAAAACCTACATCAAAGAGGAACTTAA 1646871 37 100.0 37 NNNNNNNNNN ........G.........G..A............... TTGAAATTATTTCTTCAGTAAAATCAAAATTCGATAA 1646945 37 100.0 36 NNNNNNNNNN .................TG..A............... TGCGTAACGATTTCGGGAGGTGCTCCGCCCGGTTTC 1647018 37 100.0 36 NNNNNNNNNN ........G........TG..A............... CTTTTGTCATTCTCACAATCATTATAATTATTAAAT 1647091 37 100.0 35 NNNNNNNNNN G.................................... AGGAGTTACTAATGTAAATTCCGCCATTTCTTCCA 1647163 37 100.0 35 NNNNNNNNNN .................TG..A............... TTGATGCCTAGCTTAACAGCGATTTGATTAGGGGC 1647235 37 100.0 36 NNNNNNNNNN G................TG..A............... GGGTGCAACCAGGTTTGGTTATTGGGTTAAGTGATT 1647308 37 100.0 36 NNNNNNNNNN G................TG..A............... AGGGCTGGGCTTATAATCCCGATGCCCCGGGAGGCG 1647381 37 100.0 36 NNNNNNNNNN G................TG..A............... ACAGAAGTATCGAATGTGAAAATTCAAAACGTGATT 1647454 37 100.0 36 NNNNNNNNNN G................TG..A...A........... AAGTTCCCCCTTTGGGGGTTAGGGGGAATAATTACT 1647527 37 100.0 36 NNNNNNNNNN .................TG..A............... TAACAAAAACGGTCGTGTATTCTCAGACTTGGTCGA 1647600 37 100.0 35 NNNNNNNNNN .................TG..A............... ATTTCAAAATTGGGTATCTACTGCGGTTATTTTCT 1647672 37 100.0 36 NNNNNNNNNN ................C.................... ATGATAAAGCCTTTGAAAATTACCAGGCTTTTGGCA 1647745 37 100.0 37 NNNNNNNNNN .................TG..A...A........... AAGTTCCCCCTTTGGGGGTTGGGTGGGAATAATTACT 1647819 37 100.0 1 NNNNNNNNNN ...........C.......................GT NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 77 37 36 CTTCCAGACCATTCCATCAAACAACTAGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:59.46%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.50,-1.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-32] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [195,187] Score: 0/0.18 # # Final direction: F [4.91,0.64 Confidence: HIGH] >NC_014034 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1434350 32 100.0 33 ATCCTGCTGG ................................ GTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT 1434415 32 100.0 34 CGTCAACCTT ................................ ACGGATTGCATGGCGCCGAGGGACAGGCTTTGCA 1434481 32 100.0 34 AGGCTTTGCA ................................ CGCCCGCGGCGTTTGACCTGGTCGCGGGCAGCTG 1434547 32 100.0 35 CGGGCAGCTG ................................ GACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTT 1434614 32 100.0 34 GTGGCGCCTT ................................ ACGGATTGCATGGCGCCGAGGGACAGGCTTTGCA 1434680 32 100.0 34 AGGCTTTGCA ................................ CGCCCGCGGCGTTTGACCTGGTCGCGGGCAGCTG 1434746 32 100.0 35 CGGGCAGCTG ................................ GACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTT 1434813 32 100.0 33 GTGGCGCCTT ................................ ATGGAAAACCGCGGCTTCACCGCGCGGGATTGG 1434878 32 100.0 GCGGGATTGG ................................ CGTGATGCGT ========== ====== ====== ====== ========== ================================ 9 32 34 GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [4,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-9.20,-9.20] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [41.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [130,271] Score: 0.18/0.18 # # Final direction: F [0.27,0.18 Confidence: LOW] >NC_014034 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2157796 37 100.0 33 GAACATCATG ..................................... TCTCCCAGCATACCAAACCGCTGGCGACCATCA 2157866 37 91.9 34 GCGACCATCA ..................................--- TGCACAGGAGAGACCGATGAAAATCACGGCCTTC 2157937 37 97.3 32 CACGGCCTTC .............................C....... ACCTAAACAAGAGGTTCTACGATGCCGAAAGG 2158006 37 100.0 TGCCGAAAGG ..................................... TCAGGTCCCGC ========== ====== ====== ====== ========== ===================================== 4 37 33 GGTTCAGTCCGCCGTCGTCTTGGCGGTGATGTGAGGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-10.60,-9.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [45.0-43.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [169,369] Score: 0.18/0.18 # # Final direction: R [0.37,0.55 Confidence: LOW] >NC_014041 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================================== ====== 4768893 47 100.0 30 AACCTGGTAT ............................................... CACTAATTTCCGCCAATTCACACAACATCG 4768970 47 100.0 30 CACAACATCG ............................................... TATACCGCCCATTACGGAATCTAATAACAT 4769047 47 100.0 30 CTAATAACAT ............................................... AGGGTAAAAGATATTAATACAAAAAACTGG 4769124 47 100.0 30 AAAAAACTGG ............................................... CGGAAGGAGCAAGTAAAACGGCTGCATCAA 4769201 47 100.0 30 GCTGCATCAA ............................................... TTCTTTAGTGATATACATGTTACCAGCAAT 4769278 47 100.0 30 TACCAGCAAT ............................................... ACGGGATTTACGAAGTTCAGCTTACCGTGA 4769355 47 100.0 29 CTTACCGTGA ............................................... TAGGCACTCCCATTGCTTTGCATATGTTC 4769431 47 100.0 29 GCATATGTTC ............................................... AAGCCCTTTATAAAACTTACCTCCCGAAG 4769507 47 100.0 29 CCTCCCGAAG ............................................... TTTGAGAAAGGTCTTTGTTTAATTCTCTT 4769583 47 100.0 30 TAATTCTCTT ............................................... TTACTATGAACCGTTCCATAGCATCCGGGA 4769660 47 100.0 29 GCATCCGGGA ............................................... TAGGTTTTCATCCAAACACTTACGAGCAT 4769736 47 100.0 30 TTACGAGCAT ............................................... CAAGCCAGACCAATCCAATGATGATGAGGA 4769813 47 100.0 ATGATGAGGA ............................................... AAGGGATGCT ========== ====== ====== ====== ========== =============================================== 13 47 29 CCTGTGAATCCAGTACTAAAAGTACAATTCTGAAAGCAATTCACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.83%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.80,-5.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [117,1430] Score: 0.18/0.18 # # Final direction: R [0.27,0.55 Confidence: MEDIUM] >NC_014041 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================================== ====== 4769961 47 100.0 30 ATTCACCTTT ............................................... ATTATCATATTCATATTCATATTCACCTTT 4770038 47 100.0 30 ATTCACCTTT ............................................... TAGAAAGCGTTGAGAAATGGAGAGTGATAT 4770115 47 100.0 30 AGAGTGATAT ............................................... ACCTAGAGACCCGATGTTTGAGCGTTTCGG 4770192 47 100.0 30 AGCGTTTCGG ............................................... TTATACTCCTTTTGCTAATATCTCTATCTC 4770269 47 100.0 30 TCTCTATCTC ............................................... TACTAATTCATCTTAGTGACAGCAATAGCC 4770346 47 100.0 30 AGCAATAGCC ............................................... TACCCGACCTGAGCCAAAATTCAGATGATC 4770423 47 100.0 29 TCAGATGATC ............................................... TAAACTATCGAAGGGCCCGGGATGGACTA 4770499 47 100.0 30 GGATGGACTA ............................................... CAGATTTTGATAGAAGTCTAAAAATTGTAG 4770576 47 100.0 30 AAAATTGTAG ............................................... TCAATCCCTTTATCCTTACGCGGGTTTGAT 4770653 47 100.0 30 CGGGTTTGAT ............................................... GCAACCTGAGCTGCAAAACCAATAAGTAAA 4770730 47 100.0 30 AATAAGTAAA ............................................... CGGTAAAAAAGCAAAAAGAATATTTCAATG 4770807 47 100.0 30 TATTTCAATG ............................................... AGGCAGTCCAACGCCCATCTTAGTAGCATC 4770884 47 100.0 30 TAGTAGCATC ............................................... CAAAGCTGAATATACTTATCGATGATCGTG 4770961 47 100.0 GATGATCGTG ............................................... TGTCTCTTAG ========== ====== ====== ====== ========== =============================================== 14 47 29 CCTGTGAATCCAGTACTAAAAGTACAATTCTGAAAGCAATTCACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.83%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.80,-5.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1185,282] Score: 0.18/0.18 # # Final direction: F [0.45,0.37 Confidence: LOW] >NC_014098 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2703853 37 100.0 38 ATAAACACGT ..................................... CCCAAGCTGCCGAGCTGGAAGAGGTTTTGCGGATGGAG 2703928 37 100.0 38 GCGGATGGAG ..................................... ACCTCGACGCAGCAGGGCCTGTGAAAGGGGTGATGGAT 2704003 37 100.0 36 GGTGATGGAT ..................................... GCCCGAACCGATGGCCGAGATGGAGGAAAAACCGAA 2704076 37 100.0 39 AAAAACCGAA ..................................... GCTCATGACTCGGGATGAATTCGTGCGGGACGTGTTCAT 2704152 37 100.0 38 ACGTGTTCAT ..................................... TCAGGATGCGACGCACTTCAAGGTTGCGAGACTTATGC 2704227 37 100.0 39 AGACTTATGC ..................................... ACGACCAGTGTAGCCGACGCGACGCCGATGGACGTGAAC 2704303 37 100.0 37 GGACGTGAAC ..................................... GGAGATTCAGGGGGTGATCGCCGCTGAACATCGTTCC 2704377 37 100.0 36 ACATCGTTCC ..................................... AACGTCCAAGGCCGTAACGTTGAGCATCTCCTTGGT 2704450 37 100.0 38 TCTCCTTGGT ..................................... TCCACCAGCACGTCCGGAGTCGTGAACAGGTACGTCGT 2704525 37 100.0 35 GGTACGTCGT ..................................... GGAATCACTCCTCCCTGCCATTCGGCCATGAGACC 2704597 37 100.0 39 CCATGAGACC ..................................... GAAATCGGCGTGGCTGGTGCTCCAGTCCACGACCGACAG 2704673 37 100.0 40 CGACCGACAG ..................................... AGCCGTGCAATCTGTTACTGACTGCACTGATCCAATTGTT 2704750 37 100.0 37 TCCAATTGTT ..................................... CGCAGATGCTGGTCTACAACAAAGCGAAGACGATGCT 2704824 37 100.0 35 AGACGATGCT ..................................... TCTGCACGAATTGCCTGGCCGGAACGACATGCTAC 2704896 37 100.0 36 GACATGCTAC ..................................... AGCGGCGTCATCGGTCGACGCCAAAATGTCAGTCAG 2704969 37 100.0 35 TGTCAGTCAG ..................................... GGGACAAGGCCACACATCATTCGTCCGAGAACAAA 2705041 37 100.0 CGAGAACAAA ..................................... TCTTCCTCTC ========== ====== ====== ====== ========== ===================================== 17 37 37 CCTTCAACGGGGCCGCGGGGTGAACCCGCGGAGTCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-16.30,-14.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [926,367] Score: 0.18/0.18 # # Final direction: F [0.92,0 Confidence: HIGH] >NC_014098 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================== ====== 2714178 34 94.1 46 GGGCTCATCG ....................T......T...... ACGGCCGAGTGATCGAGAACGTCTTGAACAGGAGTATGCCTTCTGC 2714258 34 97.1 39 TGCCTTCTGC ................A................. ACTCTACCAGCCCATCGTCCAGTTCGATTTGCACCGTAC 2714331 34 94.1 44 TGCACCGTAC .......................A........A. ACGTCTCCAATCGGCAGGACGTCTGAGCCAAACGGAGTTTCAGG 2714409 34 97.1 40 GAGTTTCAGG .......................A.......... ACCAGCCGCAATCCGCGCCATGTTCATTCCCCCTGTAGTC 2714483 34 94.1 44 CCCTGTAGTC ......G....................T...... GCCAGTGCCATAAGGACCGTCAGGCAAGGCGTGAAGAGCACAAC 2714561 34 97.1 38 AGAGCACAAC ...........................T...... GCCCGTACCCTTAGGAATGTCATTCCTAACCCCCCCGC 2714633 34 100.0 38 ACCCCCCCGC .................................. GCGTCCCAGGATCGGCTTCTGCAAGGTTGTGGAAGTCC 2714705 34 100.0 40 GTGGAAGTCC .................................. GCGGGTGCATGCCAGCATCCACCAGGCGACCGTCAGTTCC 2714779 34 100.0 41 CGTCAGTTCC .................................. GCGCACGAGTACGGATACCCGACGGTGGTCGGGGCAGACGC 2714854 34 100.0 42 GGGCAGACGC .................................. GCGGGGGGCACGTCCCTGCCCGCTCCGACGGGGCTCACACAC 2714930 34 100.0 39 GCTCACACAC .................................. GCGCGGGGCGAGTGCGACCGGTGCAGGCGGTGGACGCGC 2715003 34 100.0 GTGGACGCGC .................................. GCTCTTGGCCC ========== ====== ====== ====== ========== ================================== 12 34 41 CTTCAACGGGGCCGCGGGTTCAACCCGCGGAGCT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [5,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.90,-12.10] Score: 0/0.37 # Array degeneracy analysis suggestion: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [33.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [1236,936] Score: 0/0.18 # # Final direction: R [0,0.68 Confidence: HIGH] >NC_014098 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2750070 30 100.0 37 AAAAACTCTA .............................. TCTACGGGTTGCCGGTGCAGGATTTTGTGGAGGAAGA 2750137 30 100.0 37 TGGAGGAAGA .............................. GGATCACCCGCATGACACCGAGGTTGTGCCCATCCCA 2750204 30 100.0 35 GCCCATCCCA .............................. CTTTCATCTTTTTTCTCAACCTCCTGATCTGTTAT 2750269 30 100.0 38 GATCTGTTAT .............................. CCGCCCGTCTTCCAGACGAAATACAGTTCGGGTCTGCT 2750337 30 100.0 37 CGGGTCTGCT .............................. TTGTCCGGAAATCGGGAACCGACGTGCTCATTTCGGA 2750404 30 100.0 39 TCATTTCGGA .............................. TGGTTTCGATTCACCCCCTCAAACCGTCCGGCCCGGCGG 2750473 30 100.0 38 GGCCCGGCGG .............................. TCTGATCAACCCTCTTTCATTGTGTTTTAGTCGCCTTT 2750541 30 100.0 38 AGTCGCCTTT .............................. TTGGCCGGCCCTCATACCGGCACCACCCGGTCCAGCGA 2750609 30 100.0 38 GGTCCAGCGA .............................. TTTAATTCCGAGTAAGGAAAGCGGGATGAATGCAAAAA 2750677 30 100.0 38 AATGCAAAAA .............................. TATATGGGGAGGGACCCTTTATGCCAACCAACAGCTTG 2750745 30 100.0 39 CAACAGCTTG .............................. GCAGAGGAAGCCCTCAAGCCGATCGTAGTGAAGAGAGAT 2750814 30 100.0 39 GAAGAGAGAT .............................. GACTAAACTTCGGGGGGCACGGACATGAGCATGAACGAA 2750883 30 100.0 38 CATGAACGAA .............................. GCCGGCCGCTGCCGTCCCGACGGCTCCGACGCCCACCG 2750951 30 100.0 35 ACGCCCACCG .............................. AGTTCAGCGCCTGGCATGGGCATCACCTCCTCGTA 2751016 30 100.0 37 CCTCCTCGTA .............................. CGGCGAAGGAGATGTCTCTGGCGAGTCCCGCGCTCCG 2751083 30 100.0 36 CCGCGCTCCG .............................. GTGTTAAATGACAAGACTACCGTCCGGACGGCGAAC 2751149 30 100.0 39 GACGGCGAAC .............................. GCGGATCACGCACTACCGTGAGCGGTACTTTGATCCGGA 2751218 30 100.0 39 TTGATCCGGA .............................. GAGCGGGCCGTCGTTCTCATCACCGTCATTACTCCTCTG 2751287 30 100.0 39 TACTCCTCTG .............................. GAGCGGGCCGTCGTTCTCATCACCGTCATTACTCCTCTG 2751356 30 100.0 37 TACTCCTCTG .............................. GTCCGCCACTCGCTTCCGGTCGGCGGCATCGGCCAGG 2751423 30 100.0 38 ATCGGCCAGG .............................. GCATCAACAGGAACTTGAGAACCTTCATCCGAGATAAC 2751491 30 100.0 39 CCGAGATAAC .............................. TGCCTGTTCAACCTGATCGACGGGCCGGACGGGAAAAAA 2751560 30 100.0 40 CGGGAAAAAA .............................. CCGCTCTTTCCGGTATCGCCTCATTTTCTCACGGTCTCGG 2751630 30 100.0 37 ACGGTCTCGG .............................. CATGAAAAATATCCGGACGCCACTCGGGATGAACTCG 2751697 30 100.0 36 GATGAACTCG .............................. ACGGCGAGGAAGAGGATGAGGACGATCCGGATTGGG 2751763 30 100.0 36 CCGGATTGGG .............................. AACAATGTAGCACATACACATTGTAACGTGTAAGAG 2751829 30 100.0 36 CGTGTAAGAG .............................. AATGAAACGCTGAGAGAGCGGCTGGAAGTGGACGTT 2751895 30 100.0 40 AGTGGACGTT .............................. TCGCGATAGACGAACACAAATTCGCCGCTATTGAGAGCCT 2751965 30 100.0 36 TTGAGAGCCT .............................. CCGCAACGCCACGGAGTATGACCGATTTGTTTTTCT 2752031 30 100.0 41 TTGTTTTTCT .............................. CGGCATCCGGCTGGCCCGCTTCGCCAAGGTGATGGCCTTGG 2752102 30 100.0 39 ATGGCCTTGG .............................. CGCCGCCTTCATCCCTCGGAACATAAGCCTGTTGCGGGG 2752171 30 100.0 35 TGTTGCGGGG .............................. AAGGCCGGTTCAATGCCGGTGTCTCAACCACCCAG 2752236 30 100.0 36 AACCACCCAG .............................. GTTGCCTGTCCTGCTGGCCCCAAAGAGGGCATAGAG 2752302 30 100.0 39 GGGCATAGAG .............................. CCCACTATCGCGTCCAGGGCTCCTTCTACCATGGCCTGA 2752371 30 100.0 37 CATGGCCTGA .............................. CCGTCCTGTCGTCACCATAACGAGCCACGTCGACGCC 2752438 30 100.0 38 CGTCGACGCC .............................. TTTCCATCCACTGGACTACTCGCGGGTTGACCACGTCA 2752506 30 100.0 35 GACCACGTCA .............................. GAGTCGGGCTAATCTTCTTTGACCCCTTACCTGGA 2752571 30 100.0 40 CTTACCTGGA .............................. AGGATGTCCTCATCGCGGTCCTGTGTCCTGGTACTGATGG 2752641 30 100.0 35 GTACTGATGG .............................. CCGACGGATCTTCACCTGGGTGGGTTCTTGATCGA 2752706 30 100.0 38 TCTTGATCGA .............................. TGAGCGGACCAGGAACCTTGTCGGCGGGCACCAGCGGT 2752774 30 100.0 36 CACCAGCGGT .............................. CGGGGGTGATCGTCATCACCACGGTGGCCCGGGCGG 2752840 30 100.0 40 GCCCGGGCGG .............................. AGCCGGAATTCTTTGTTAGCCGGCACTGGGTCCTCAAACT 2752910 30 100.0 40 TCCTCAAACT .............................. CGCTCCCACCCATGCACCAAAGGTGTCTGGTTTCGACCTC 2752980 30 100.0 37 TTTCGACCTC .............................. CTGGCGCTGGTTGAATTTCAACGCCACCAGATCGATA 2753047 30 100.0 36 CAGATCGATA .............................. CAACACCCGGATACCTAAATTATCGCATACCTTGTC 2753113 30 100.0 40 ATACCTTGTC .............................. CGGCCGTAGGGGTTCGCCGGGTCCAGCTCGGCCAGCATGA 2753183 30 100.0 37 GCCAGCATGA .............................. GCGCTCGTTCCGGGCAGCGTCATGTCATTCCCGAGCG 2753250 30 100.0 39 TTCCCGAGCG .............................. GCTAGTGCCGGGGAGATCACCGATATGGCCTACGCACTC 2753319 30 100.0 35 CTACGCACTC .............................. CCGTCGTCGATCACCAACGGCGCGGACGCAGCCCG 2753384 30 100.0 37 ACGCAGCCCG .............................. TGAGGGCCTCCAGCGAATTCTATGACTGACAATTCCG 2753451 30 100.0 38 GACAATTCCG .............................. AAGGTAAACCCTCGCCCGATATTTCGCTTGCAGCTCAT 2753519 30 100.0 37 TGCAGCTCAT .............................. TCAAAAGCATCCAGTCAGGTACAACGGCTGGAGCGGG 2753586 30 100.0 39 CTGGAGCGGG .............................. GCTAAACAGGATGAGCAGGTCCCATAAGCGTACTCCATC 2753655 30 100.0 38 GTACTCCATC .............................. GACCAATACGTCTTGCGATGAGCCATTCACTTCGACGG 2753723 30 100.0 39 ACTTCGACGG .............................. GCGTCCGCATGATCGCTTCCTCTATGTCGCTCGGATCGC 2753792 30 100.0 36 CTCGGATCGC .............................. TTGTTTTGATCGCCAGCTTGGCAAACCACCAGCCAG 2753858 30 100.0 38 CACCAGCCAG .............................. TTGGATGTTGCTTACGATCGCGTTCCAGGCGGCGGAAA 2753926 30 100.0 40 GCGGCGGAAA .............................. TCGCTACGAAGATGTGGACATGGAGGTGGTGGTGAGTGGC 2753996 30 100.0 37 GGTGAGTGGC .............................. CGGGGATGGCCTCCCGGCGCTGATGAGGCAGGCCGAG 2754063 30 100.0 37 GCAGGCCGAG .............................. TGTGATTGATGTCGGCGGAACGTGTCACCGCCATGAA 2754130 30 100.0 38 CCGCCATGAA .............................. CGGGCTGGCATGGGGCGTCCGTCGTCCCGGCAGACGAT 2754198 30 100.0 35 GGCAGACGAT .............................. TTCGTCCTTCCGTTGCAACCATCGACTGACGACGT 2754263 30 100.0 36 CTGACGACGT .............................. TTCAAACCAGACCCGTCCTTCCTGTGGCTGGAGGGG 2754329 30 100.0 37 GCTGGAGGGG .............................. CCTATATACAGACCACCCACCTTGTAACATTTACTGG 2754396 30 100.0 39 CATTTACTGG .............................. AATGGTTCGGATCGGCGGCAAAGTCCGCCGTGATACGCA 2754465 30 100.0 38 GTGATACGCA .............................. TCAATGACTGAGGACGGGAAAAAGGTTGAAGCGGAGCT 2754533 30 100.0 38 AAGCGGAGCT .............................. GGCGACGAAGATCTCGCCGGTCTGCGTACGGTGCTCAT 2754601 30 100.0 40 CGGTGCTCAT .............................. AATCAGCGGGTCTTGCATCGTCAACAACCGCCTCTGCGGT 2754671 30 100.0 40 CCTCTGCGGT .............................. TGAGTGGTGCCCGATCGAAGTCCTAACCGATTTCCACGCA 2754741 30 100.0 40 TTTCCACGCA .............................. GCAGGATGGAGCGGAGAATCAGCGGTTCTTGCATCGTCAA 2754811 30 100.0 38 GCATCGTCAA .............................. AAAGCGTGGGCGCAAGGAAGATGAGGAAACCAAACCCG 2754879 30 100.0 39 ACCAAACCCG .............................. ACCCCTGCTTCGATCTCATACCCTCGCCCTTTCCGCTCC 2754948 30 100.0 39 TTTCCGCTCC .............................. GGGATGAAACCCCGCATATATACCCACTCCCCGTCCCAG 2755017 30 93.3 40 CCCGTCCCAG .................CT........... GGGATGTGCCGCCCGGATACGACGGATTCGCATACAGGCA 2755087 30 100.0 40 CATACAGGCA .............................. ATGCGAAGACGGATGCCAGGATTCGCGAGGTAAAAGACGA 2755157 30 100.0 37 TAAAAGACGA .............................. CAGAGCGAAAAGGCAAACCCGCGCCAGTCCTGATCAT 2755224 30 100.0 36 TCCTGATCAT .............................. GACGTGCGGCTCAGAGGCTGAGGTCGTTCCAGAAGG 2755290 30 100.0 40 TTCCAGAAGG .............................. CCTTCTCACACACGAGCCAGCGCCTTCTGGCTGGCGGGCG 2755360 30 100.0 38 CTGGCGGGCG .............................. CTCCAGGCGGCCAGCAGAGTCTCGACGAAATCGCGCTC 2755428 30 100.0 37 AATCGCGCTC .............................. CTCCAGCAGGAGCGCGGTGCTACCGTCGGACACCCGG 2755495 30 100.0 38 GGACACCCGG .............................. TCGAGTTTTCGCCCGTTCACTTCCCGCCACTCGGCCCT 2755563 30 100.0 40 ACTCGGCCCT .............................. CGGAAATTGGCTGGGCAGTTGGAAATTACGTATGACCAAT 2755633 30 100.0 40 TATGACCAAT .............................. CATCCCCGGGAGTGGCCATGCGAGATTCTCGTGCACCCGG 2755703 30 100.0 39 GTGCACCCGG .............................. GGACAGACAAGTTTCTTTGCGTGATCCGGATGACGTTCG 2755772 30 100.0 40 ATGACGTTCG .............................. CCAGATGAGCGGAGATGTACTGCTTCACGCGGTCACGCAG 2755842 30 100.0 38 GGTCACGCAG .............................. TTCGGTTCATCGTGTATAATATACGGCGAGGGGGGTGT 2755910 30 100.0 37 AGGGGGGTGT .............................. CTTCCTCGTACCAGCGGAAGAATGCGTCCCGGGGGAT 2755977 30 100.0 39 CCCGGGGGAT .............................. CCCCGCATACGCCGGACATTACTTCCTGAACGCCACGAG 2756046 30 100.0 37 ACGCCACGAG .............................. CGCTCAGCTGGGGGCCGGAAAAGCAGGTCATCGAGAT 2756113 30 100.0 38 TCATCGAGAT .............................. TCCATGCGATGGCTGCTGGGTTGCAACATGATATTAAG 2756181 30 100.0 37 TGATATTAAG .............................. GATTTCGCCGGTGTCTGCCCATGTCTGTCCAGTCGGG 2756248 30 100.0 37 TCCAGTCGGG .............................. CCGGAACCGGCGGCGTGAAGGGAGGCGATAGGTTGAC 2756315 30 100.0 35 ATAGGTTGAC .............................. CCGCTATCAAATCGACTGAGGAGGGGATAACATGT 2756380 30 100.0 35 GATAACATGT .............................. TCGAGGGCGCCATAGGCGTAGGGATCGGCGGCCAG 2756445 30 100.0 39 CGGCGGCCAG .............................. TGGTAGGTCATGCGCCACCACTCTCCCGGATCGCCTGAA 2756514 30 100.0 39 ATCGCCTGAA .............................. TCTCATGCGCCTTCGCCGCCTGCTCCAGCGCGGACTCTG 2756583 30 100.0 39 GCGGACTCTG .............................. ACACCTATTCGTGGAGCAGGTGGGAGCGGGAAGAGAGCA 2756652 30 100.0 36 GAAGAGAGCA .............................. CCCGAACCGCGCTCAAAGACCACGAGAATTTCACAT 2756718 30 100.0 40 AATTTCACAT .............................. GCCGATCAACTCTGCAATCGCTCGCACGATCTCATTACGC 2756788 30 100.0 38 CTCATTACGC .............................. CACGTCCACGCGGACGCCACCTCTCCGACCTATTCGGC 2756856 30 100.0 39 CCTATTCGGC .............................. CGCGGTCCCGGCCAGAATGTCCGCCGCCTTGGATGCCGA 2756925 30 100.0 39 TGGATGCCGA .............................. CCATCTTGGTCGGCCTGTCTTCTGGCTGGCCAACCAGAA 2756994 30 100.0 41 CCAACCAGAA .............................. GGCGCCAGGGATGGCGGCCGCCAACATCTCCGATTCAACGT 2757065 30 100.0 38 GATTCAACGT .............................. GGCGATCCCATCCAAACCGACTGGCTACAGGGTGTCAT 2757133 30 100.0 36 AGGGTGTCAT .............................. TCCTTTGTCGCCCAACCCTGCTGGTAGGCGAGTTTC 2757199 30 100.0 38 GGCGAGTTTC .............................. CTTCAGCCAAACACCACCTTCCTGTCCGGTTCGCCCCG 2757267 30 100.0 38 GTTCGCCCCG .............................. CGAGGAACCGGCGCCAGCGGAGCGTCGGTGTGGTCGGA 2757335 30 100.0 37 TGTGGTCGGA .............................. TGTACTGGCCGGATTCGATTTCGCTGCGAAAGCGATT 2757402 30 100.0 38 GAAAGCGATT .............................. CTTCAGCCAAACACCACCTTCCTGTCCGGTTCGCCCCG 2757470 30 100.0 37 GTTCGCCCCG .............................. TCGATTGGCTGAAGGGGCAGATGGCACAAGAGAGCGG 2757537 30 100.0 37 AAGAGAGCGG .............................. GCAGGGCCGCACCGAGTCATGTGTGCTGATCTTGAAT 2757604 30 100.0 39 GATCTTGAAT .............................. CACCTGAGCGGCCTGATCACGCCGTTCGGCTCGATCACG 2757673 30 100.0 36 CTCGATCACG .............................. AGGCGTGTTCCTGCTGTTCCACGATGGGCGAATGGT 2757739 30 100.0 36 GGCGAATGGT .............................. CGTTCGGCGCGGATCGGTTGAGGAGCGGACGATGGA 2757805 30 100.0 40 GGACGATGGA .............................. ACGTCGAGAGGCGGATTGCGGCCGACACGGGCGGTGCGAT 2757875 30 100.0 40 GCGGTGCGAT .............................. GCCTGACCATCTTCACTGGATGCGGGGATCCCTCCCAGTA 2757945 30 100.0 35 CCTCCCAGTA .............................. CAAGGAACTCGAAAAAATCCCTGTGCGCATCGACG 2758010 30 100.0 35 CGCATCGACG .............................. GTCGAATTGCACCACCTGGTTCGAACTCGTCACAT 2758075 30 100.0 40 CTCGTCACAT .............................. GCCCTTGTTCGATATTTCCAATTTGTGTTCCAATATCTCC 2758145 30 100.0 39 CAATATCTCC .............................. TCCTCACGGGCCGTAGTATCCCGGCGTACCACTGAGTGT 2758214 30 100.0 36 CACTGAGTGT .............................. GATCAGATCCCTGCATACTTTGTGTCCAGTTGACCG 2758280 30 100.0 39 CAGTTGACCG .............................. CTTTGCGCGGCCCGGTCAGGGTAGTGTGGACCATGAGGC 2758349 30 100.0 37 ACCATGAGGC .............................. AATCCGTTTCACCAGGATGCGCTGGCTCAACAGGCGA 2758416 30 100.0 38 CAACAGGCGA .............................. CCACGGTGGTGCAGTCGATCCAGCTCAGCATGACCCGC 2758484 30 100.0 40 CATGACCCGC .............................. ACCGGCAGGACCAACGGCAGACGGCATGACACAGGGGACG 2758554 30 100.0 38 ACAGGGGACG .............................. TACCACGCAACTCCATAAAGACGCGATTCACCGCCGCA 2758622 30 100.0 36 CACCGCCGCA .............................. GCCGTCGTCCCATTCTTCGACGTGATCGATGTCCGA 2758688 30 100.0 35 CGATGTCCGA .............................. CTCCCAGGACTGTACTTGCTCCCGTCGCATGCCGC 2758753 30 100.0 37 CGCATGCCGC .............................. CATCTTCGGAGGTTTCGCCTGCCAGCAGTATCGGCTG 2758820 30 100.0 39 GTATCGGCTG .............................. AGAAGAGAAGACAAATGAACTAAGTAGTGGTGGTGGTGA 2758889 30 100.0 36 GTGGTGGTGA .............................. ATGGACTGGTGCTTGTGGAAGTTCATCAGGTACAGG 2758955 30 100.0 38 CAGGTACAGG .............................. GGTAGTAAAGGGCGGTCGCGCATCAAAGAAGAGCACCA 2759023 30 100.0 37 AAGAGCACCA .............................. TCTACAGCGAATTCATTGGCTTCACGCTCGATTTTGT 2759090 30 100.0 38 TCGATTTTGT .............................. ACGTCCGCGAAATCCGTCGACGGGTCCTGCACCCTCGG 2759158 30 100.0 37 GCACCCTCGG .............................. TGCCGATTCGGTTATCCGACCAGGCACGGGGGTTGTA 2759225 30 100.0 39 GGGGGTTGTA .............................. GAGCGTTTCTATCACGCGCATCTGGCTCTCCAACAGCGC 2759294 30 100.0 38 CCAACAGCGC .............................. GCGTGCAGGGAGGTGAAGGCGTGAACCTGACACCGACG 2759362 30 100.0 39 GACACCGACG .............................. CGCGACATCGACTTTGAGCGCGGGGTTGCGCGTATCAAC 2759431 30 100.0 40 GCGTATCAAC .............................. TTTCTGAAGCAGCTAGCGTATTCGTGGCAGTGAAAGATGA 2759501 30 100.0 41 TGAAAGATGA .............................. GTGTTGACGCGGGAATGTTTTTCCCGCGTTTTTCTTTGCTA 2759572 30 100.0 40 TTCTTTGCTA .............................. GGTCACGTTCATCGCAGTCTAGACGCTGCGGAAAGATGTT 2759642 30 100.0 39 GAAAGATGTT .............................. TTTCTAGCACGTGGTTAGGTGACGTTGAATTGAGTGTTT 2759711 30 100.0 36 TTGAGTGTTT .............................. CCTTTTTCACTCCCACCTCACCACCCTCCTGATCCG 2759777 30 100.0 36 TCCTGATCCG .............................. TAAATAGTCCATCATGATAGTACAGGTTATTATACG 2759843 30 100.0 37 TTATTATACG .............................. GGCGATGTGATGCCACACGTCCTCGAAGGTCCAGTCG 2759910 30 100.0 40 GGTCCAGTCG .............................. CTCCCGATACCAGTGGGGATTCCCCCAGGTGAGAAATTCG 2759980 30 100.0 38 GAGAAATTCG .............................. CAGCAGATAAACACGGTATAATAACGTTTATGTGCTCG 2760048 30 100.0 37 TATGTGCTCG .............................. CCGCGCACCACATCTCGTTCCCGTCCGGGCTGTACTC 2760115 30 100.0 37 GGCTGTACTC .............................. GGGCAAAGCGGAGTTGCGGACAGCATCACCCGGAGAA 2760182 30 100.0 36 ACCCGGAGAA .............................. CCAGAAGACGTTGGCGATCGAAGGTGTGTCTGCGGT 2760248 30 100.0 40 TGTCTGCGGT .............................. CCGACGATATACCAACCAGCCTCCGGGATGGTACTCTCGG 2760318 30 100.0 39 GTACTCTCGG .............................. GAGGTTTTGTTCCTTTTATCGACGTTTCTTTTCGGAACA 2760387 30 100.0 39 TTTCGGAACA .............................. CGAAGACCTAATCAGACTTCACACTCCGCCACCGGAAAT 2760456 30 100.0 36 CACCGGAAAT .............................. TCACCAGAGCGCTCATTGTTTTCCTCCTCTCACGCC 2760522 30 100.0 39 CTCTCACGCC .............................. CCCGGACCCGTACCCGTCGAACTTCTATACCCTTTGCGT 2760591 30 100.0 37 CCCTTTGCGT .............................. TCTGCGCCTCCTAGCAGATCCGAGAGGTATGCTTCCA 2760658 30 100.0 40 TATGCTTCCA .............................. ACTCGTCACGCCTCCTCCCCCAACTCTTCCAACGCCTCTT 2760728 30 100.0 40 AACGCCTCTT .............................. ACGACCGTAGCCCTCCCCATGTCTGGCCTGTCATTTGTGA 2760798 30 100.0 37 TCATTTGTGA .............................. CGCCCGCAAAGCGCGTGAACTCGAAGCGATCAACGTC 2760865 30 100.0 35 GATCAACGTC .............................. TCCGGGGTGGAACGGGACGCTGTGGACCACCATGT 2760930 30 100.0 36 ACCACCATGT .............................. CTGAAGTTCATCCTCAACGCTGAGAGTGTGAAACAG 2760996 30 100.0 35 TGTGAAACAG .............................. GTTGTGGCAACAGGTCGGCTCGTACATTGGTGCGG 2761061 30 100.0 38 ATTGGTGCGG .............................. AGCACGATGTCGCGGATGGGTTTGCCGTGCACTTTCTC 2761129 30 100.0 36 GCACTTTCTC .............................. GAAAAACGACCGGCCTGAAATAAACTGGAAAGCCGT 2761195 30 100.0 38 GGAAAGCCGT .............................. GTTGCAGCCGCTTGTCATCGGCCGCCAGCCACGGCTCG 2761263 30 100.0 38 CCACGGCTCG .............................. GGAGACTCATTGCTGAATCTCCCTGCTCACAGTCAGTT 2761331 30 100.0 39 ACAGTCAGTT .............................. CTTACTAATCCCGTAGTATTTATAGACTTTTTCCTCGAT 2761400 30 100.0 37 TTTCCTCGAT .............................. AGATTTGGACAAACGCGGCCCGTGAATGTGCATATGA 2761467 30 100.0 39 GTGCATATGA .............................. CCGGCGGTTTTCCCAAAGCACGTGGGTGTGCCAAAACTG 2761536 30 100.0 39 GCCAAAACTG .............................. GACGCCCAAGATTATCATCAGAATCGACCCGCCAGCGAC 2761605 30 100.0 36 CGCCAGCGAC .............................. AAATTCCCAACAAGACGAAAGGATTGCGATGATCTG 2761671 30 100.0 38 CGATGATCTG .............................. TACTTCTGTTTGCTCTTTCCCTCTGGTGTCAGTCGGAA 2761739 30 100.0 35 TCAGTCGGAA .............................. GATGCAAAATATCCCGGGGCGCGCGGGAACAACTT 2761804 30 100.0 41 GGAACAACTT .............................. CGCCATGGCGATGGCCGCCACCGAGGTTGATGCTCTTCCGA 2761875 30 100.0 39 GCTCTTCCGA .............................. CCATGGCGGCCTTTTGCTCTTCCCATCCTCCGCTGGCAA 2761944 30 100.0 36 CCGCTGGCAA .............................. ACACTGGTTTACCAGTCGCTTTTTGAATTTCCAGCT 2762010 30 100.0 35 ATTTCCAGCT .............................. CCGAATGTGCTGGCGATGACCACTACGTACAAGTG 2762075 30 100.0 37 CGTACAAGTG .............................. CACTCCTGCCGATATCGGCGCCGCCAGTCTGAGTGTC 2762142 30 100.0 39 TCTGAGTGTC .............................. GCATTGCAGTTTTTGCCGTGGCCGGTCTGGTGTACATCG 2762211 30 100.0 35 GTGTACATCG .............................. CCGCCCCCTCCGCCTTCTACATCTGAGGAATCGGA 2762276 30 100.0 37 AGGAATCGGA .............................. AAGAGGCGATGGACCAGCCCGGCCGAGGCTGACCGGG 2762343 30 100.0 38 GCTGACCGGG .............................. CCGCCTTTTTATTTCTTCCACGAATTGCCTTCCATGCA 2762411 30 100.0 41 CTTCCATGCA .............................. CGGGCCCGTCGCATTGCCCGGACAGAGGCCGCTTTCGCGTA 2762482 30 100.0 36 CTTTCGCGTA .............................. CCCGATGTCCAAGAGTGGACAAGCTGAGAAGCCCCA 2762548 30 100.0 39 AGAAGCCCCA .............................. CGATTGATTATGTTGTATGGTTTGGCTGCGTTGCAACTT 2762617 30 100.0 38 GTTGCAACTT .............................. CTGCTTTTCTGGTATTTACTTGTTTCGTCGCTTTCTAA 2762685 30 100.0 38 CGCTTTCTAA .............................. TTATACCCAACCCTAAAGGATCCGATGACCCTATTGAA 2762753 30 100.0 36 CCCTATTGAA .............................. CCGTTATCAGATAATCTTTACTATCTACAGAGTGAT 2762819 30 100.0 39 ACAGAGTGAT .............................. TCCTTGCGCCCTTCCCGTTCTTCTCGTTCCTTGATTTCA 2762888 30 100.0 35 CTTGATTTCA .............................. CTTTTTTCTCTTCTTTATCCAGCTTTTTCGCTAAG 2762953 30 100.0 37 TTTCGCTAAG .............................. CCAAACAGTTCTGAGAACTGGGATCTCGATCCCGCAA 2763020 30 100.0 39 GATCCCGCAA .............................. CTTCAAGCACCTTAGCCTGCTCAACGTCCACATTAAATC 2763089 30 100.0 38 ACATTAAATC .............................. GCGTATGTCTCAATGACGTACTGAATCGCTCGAATCGA 2763157 30 100.0 38 CTCGAATCGA .............................. TTTCGATAGTGCGTATTTTAATTGGACTGTTTCCTAAA 2763225 30 100.0 36 GTTTCCTAAA .............................. ATAGTTCATTCCCTTCTTTTATTGCTACGAATACGT 2763291 30 100.0 38 ACGAATACGT .............................. CGCGACGGTGGACAAAGACCGAGATGGAACAGGCAGTG 2763359 30 100.0 40 ACAGGCAGTG .............................. GGATCGACACGTTCGACAACGTGAACATCATCGGTGACCC 2763429 30 100.0 36 TCGGTGACCC .............................. CCTGCACGTCCCGGTCAATCCGCCGGAGATCAAGAT 2763495 30 100.0 40 AGATCAAGAT .............................. CGTGCGCGTGCTGGATGACCGCATGGCCGGGCACATTGGG 2763565 30 100.0 35 GCACATTGGG .............................. TGGGACAGAAACCGTGATGTCATCGGTCCTGATCC 2763630 30 100.0 38 GTCCTGATCC .............................. GAGGCCCGTTCCAAGGCCGTCGAGGCCCTGGCGTTGTA 2763698 30 100.0 39 TGGCGTTGTA .............................. TGATGAGCGCCTCCTCCTTCACCTTTCTCGCCGCTTCCG 2763767 30 100.0 38 GCCGCTTCCG .............................. GTCGGTTCCGGGAAAACCCACTTGCTCTGCGCAATCGC 2763835 30 100.0 39 GCGCAATCGC .............................. CAGGTCCATGGAGTAGTTCGCCTCGATCATCAGGTGCGT 2763904 30 100.0 42 TCAGGTGCGT .............................. GGGCCGTGACGGAAAACCGACGGGCGAACCGGCGGACGAATA 2763976 30 100.0 37 CGGACGAATA .............................. GCGGAGATCGAGGCGCTGGAGAACAGCGCAAAGGAGG 2764043 30 100.0 39 GCAAAGGAGG .............................. TATGGGCGCAGGAGGTGCTCCGGCGCGGGTTCGCTTCTA 2764112 30 100.0 35 TTCGCTTCTA .............................. CCTTGCTCCCGTTGTTACTATTGGTCATCGCAGAA 2764177 30 100.0 37 CATCGCAGAA .............................. ACAGGAAGGTCCTCGCGGCCGAGCGGGCCCGCATCAA 2764244 30 100.0 40 CCCGCATCAA .............................. CCCCGAATGGCGTCCGTGCCGAACATGGTCTGGAGGGCAT 2764314 30 100.0 40 TGGAGGGCAT .............................. GAGGGTGTTGTTCTTTCTCACGTGGCCCGCCGCCTCACAC 2764384 30 100.0 40 CGCCTCACAC .............................. TGTTCTGCGCCTCATAGCAGATCCGAGAGGTATGCTTCCA 2764454 30 100.0 41 TATGCTTCCA .............................. GGCACTGGCCGGGGGACACCGATTGTTCCGGCTGTGACGAG 2764525 30 100.0 39 CTGTGACGAG .............................. TCGCGATGAACGGTCCGGCGTTCTCTTTCAGTGCGTTTT 2764594 30 100.0 39 AGTGCGTTTT .............................. CCACCATCGTTGCTCAGTCCGGATGCGTCTCCGGAAGAG 2764663 30 100.0 37 TCCGGAAGAG .............................. ATCCACTTCCACGCCCGGATCTCTCCGAGCGGGAGGT 2764730 30 100.0 36 AGCGGGAGGT .............................. CAAGTTGCGGGCCGAGCTCTTGGGAGAAACGGACGA 2764796 30 100.0 39 AAACGGACGA .............................. CGAATACAAGGCTCTGCGCGACCGTCTGTTCGAGGAGAA 2764865 30 100.0 38 TCGAGGAGAA .............................. TTCCGGGCGGCTTCGTAGAAATCATTCGGTCGATCCCA 2764933 30 100.0 39 GTCGATCCCA .............................. GAAGGATGAAGCGAAGATCATCCGGCTTCGGTTCCTCGA 2765002 30 100.0 38 GGTTCCTCGA .............................. TTTGGGGTTCCCGAATACCTCACGCATTGCCTTGTCGG 2765070 30 100.0 38 GCCTTGTCGG .............................. TCCGTCGGCTTGTGGGTTCGATATGAGGTGGACGGACG 2765138 30 100.0 37 TGGACGGACG .............................. TCATGACGGGGATGCGGAAGGGCGAAATCCTGGCGCT 2765205 30 100.0 36 TCCTGGCGCT .............................. GCCGATCGAAAACCGGATGGCCTCCACGATCCGGCA 2765271 30 100.0 36 CGATCCGGCA .............................. CTGAACCTCTTGCATTCCTGTTTCCTCGTCGGGAAC 2765337 30 100.0 38 CGTCGGGAAC .............................. CCCCCGGTTAAACCTTCCTGTGGCCGCGACGAGCTCGT 2765405 30 100.0 39 ACGAGCTCGT .............................. TTCGAAGCGCCATCGCGATGACGTGTTTCTCACCGAGGT 2765474 30 100.0 39 TCACCGAGGT .............................. AGCACCGCAAATTCTCGAGAATTCGACTCGACCGAGACA 2765543 30 100.0 40 GACCGAGACA .............................. GAGAAAACGTCAACCCGAAACTTATCCGTGCTTGTCAAAT 2765613 30 100.0 37 CTTGTCAAAT .............................. ATGGTAGCGTCGTTCGTTGCGCGTTCGTTATGCATAA 2765680 30 100.0 36 TTATGCATAA .............................. GACAGGGTTCATGTGGTCCAGGCCAGGAAACAGCGA 2765746 30 100.0 39 GAAACAGCGA .............................. GGCCTCATGACCGGCCACGCATTCGGCACTCACACATTC 2765815 30 100.0 39 TCACACATTC .............................. GCAGCTGCGCAGGCGCGGGCTGCACGTTGTGGAAGCTGA 2765884 30 100.0 40 TGGAAGCTGA .............................. TGTCTGCGGTGCTGGGCCGGTCGGAACAAGCAGTCAAACA 2765954 30 100.0 36 CAGTCAAACA .............................. TCCGTAATTATCGTGGAGAATACAACTTCATGCGGT 2766020 30 100.0 38 TTCATGCGGT .............................. TCATTAGCGAGCGGGAATGGTACGACTTACTCCCCGAA 2766088 30 100.0 35 ACTCCCCGAA .............................. TCCAGAGAGGTGGCCGACCTCCGCATTCAGGCGCA 2766153 30 100.0 38 TTCAGGCGCA .............................. CCTGGCCGGGTAGATGTGAATAACGGTTTGACCTTGTG 2766221 30 100.0 36 TGACCTTGTG .............................. GTGTTCGTCTATCGCGATGGGAAGGCCATCATCGAG 2766287 30 100.0 41 CATCATCGAG .............................. GGTGTCCATCTTTGGGATGCCGAAGCTGGCCAAGTCGACGA 2766358 30 96.7 39 AAGTCGACGA .C............................ TGAACACCGGATCGGCTCGACACGGTGGTCCGTCTCGTC 2766427 30 100.0 39 CCGTCTCGTC .............................. GCTTCCCACAGAGCTGCAGTGAGGGGGATAACCAGTGGA 2766496 30 100.0 39 AACCAGTGGA .............................. CACCAAAAATGAGATCATCATATCTTCTGCCGCAGCCAG 2766565 30 100.0 39 CCGCAGCCAG .............................. ACGGCACACCACCGCTTACATAGATTGGAAATGTGGCGT 2766634 30 100.0 36 AATGTGGCGT .............................. CCGCAGACGCTGAGAAGGATTTCCCGGCGTTTTTTC 2766700 30 100.0 37 GCGTTTTTTC .............................. TGGGGGTGCCGAACATGGACCGTTGGGACATCGTGTA 2766767 30 100.0 37 ACATCGTGTA .............................. GCGGGACTCTTCGATGCGGGCGATCTGAAACAGCTGG 2766834 30 100.0 36 AAACAGCTGG .............................. TTTGGATGGCTTCGACCTCACTGTATCCACCGGCGC 2766900 30 100.0 40 CCACCGGCGC .............................. CGGCGGTGCAGGCGAGCATGACCCCGCCTGCTGCCAAGAG 2766970 30 100.0 37 CTGCCAAGAG .............................. CGGGAGACCGGGGAGCCGCACCAGAATACATGAGGCG 2767037 30 100.0 38 ACATGAGGCG .............................. CCCGCAAGGACGCAACGAAAATGAGGCCTGTTTTCAAA 2767105 30 100.0 36 TGTTTTCAAA .............................. AGCAATCGATACCGCCGGAAAAACCGTTGAATCGGT 2767171 30 100.0 38 TTGAATCGGT .............................. GAAATGTCGGGGTGGACGCACTTCCGCCCAAGCCGTCG 2767239 30 100.0 40 CAAGCCGTCG .............................. TAGGCTGCTGCCGCTTGGGCTTCCATCATCCTTATTTCGT 2767309 30 100.0 39 CTTATTTCGT .............................. GGTACACGAATTTTTGGGAGTACACCCCGGGGGATTTCG 2767378 30 100.0 39 GGGGATTTCG .............................. GGTACACGAATTTTTGGGAGTACACCCCGGGGGATTTCG 2767447 30 100.0 37 GGGGATTTCG .............................. CGGAAGCCGAGTCCGAAGTGGGTTTGGCCCGATCCCG 2767514 30 100.0 36 CCCGATCCCG .............................. GATGAAGTCGTAGAGGGACTTCTTTGCATCCTCTGG 2767580 30 100.0 35 CATCCTCTGG .............................. TTTGTATCATCCGCACCGACGACCTGAGCGAACCC 2767645 30 100.0 39 GAGCGAACCC .............................. CCTCAACCGCCGAGTCCGCCGCAGCCGCAACCGGTTCCG 2767714 30 100.0 39 ACCGGTTCCG .............................. AAGATCATGGAGTCGGATACGCGGAAGGTCATGCCGGTC 2767783 30 100.0 39 CATGCCGGTC .............................. CGGACAAAAAGGGTATATCATGGGATATGGCTATACGGA 2767852 30 100.0 36 GCTATACGGA .............................. ATCCGAAAACGACAGCACAGAGATTCGAGGAAATCC 2767918 30 100.0 35 GAGGAAATCC .............................. CTGACAACGGCCTTTTTCGAGATAGTGGTATCCGA 2767983 30 100.0 35 TGGTATCCGA .............................. GGAGACAGGCACCCCCTTTCCGTACTTGAGATCGA 2768048 30 100.0 TTGAGATCGA .............................. ACAGGTCTTT ========== ====== ====== ====== ========== ============================== 266 30 37 GTTTCCATTCCTCATAGGCACGCTACGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [7,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.90,-2.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [159,689] Score: 0.18/0.18 # # Final direction: R [0,1.33 Confidence: HIGH] >NC_014098 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2770187 30 100.0 36 TCAGTTTGTG .............................. AGAAGTCGAACTCGGTCACTTCGCGGTCCCTCCCTT 2770253 30 100.0 36 TCCCTCCCTT .............................. TCCCGACGCCAGGAATCACAGAACCAATTCCCGCGC 2770319 30 100.0 38 ATTCCCGCGC .............................. AATATAACACGCCAAACGCCGAGGCAGTCCCGTTCCAG 2770387 30 100.0 36 CCCGTTCCAG .............................. CCCATTTCTTGCCCGGTGTTCGGGTCGATCTGACGG 2770453 30 100.0 37 GATCTGACGG .............................. GCGCGAAAGTGGTCGCTGGAAACCAGGTGGATGGTAC 2770520 30 100.0 40 TGGATGGTAC .............................. GAGTGGACTCGCAGCAGAGAGCGTATGAGGCAGAAAAACT 2770590 30 100.0 37 CAGAAAAACT .............................. CGGTCACGTCCACGATACAGAAGTAGAGGAACTTCAA 2770657 30 100.0 37 GGAACTTCAA .............................. CGAGAAGCATTGGATCAAGAAGCGCTTTTTCGACCGT 2770724 30 100.0 36 TTTCGACCGT .............................. TCTCGGCCAGCCGGTTTTCTGGCTGGCCGACGAGAA 2770790 30 100.0 36 CCGACGAGAA .............................. GGAGGCGTCCGATTTCGCAACCCAGACTCTGGCCGA 2770856 30 100.0 39 CTCTGGCCGA .............................. CGGAGCGAAGAAGATCCTTGCGTACCGCCTGGCCGACTC 2770925 30 100.0 35 TGGCCGACTC .............................. GTGAGGGGAGGTGGATTGACCAATGGCGCTTGACG 2770990 30 100.0 37 GCGCTTGACG .............................. TTGTCACGGCCAAGACGCCTTCGATTGTTGCGGCGGT 2771057 30 100.0 37 TTGCGGCGGT .............................. CGCATTGCCGACGCAGCCGTCGAGGCGTACCGGCGGG 2771124 30 100.0 37 TACCGGCGGG .............................. CGCATTGCCGACGCAGCCGTCGAGGCGTACCGGCGGG 2771191 30 100.0 40 TACCGGCGGG .............................. CCGATCCCGGGAAGGCAGGAAACGTACCAGCTGGTGCCAT 2771261 30 100.0 37 CTGGTGCCAT .............................. GTCCATAGGCATCGCCGCCTTACTGCCATTTGATGTT 2771328 30 100.0 36 ATTTGATGTT .............................. TTGGTCAATATGGCAAAAACTGTAGGGGGTGAAGGA 2771394 30 100.0 38 GGGTGAAGGA .............................. CGCATGACGCCCAGGTTATGACCGTCCCATGTACTGGA 2771462 30 100.0 39 ATGTACTGGA .............................. AGACTTTCCCGAAACCGGCGCGGCTTTGGTTTGGTTTGA 2771531 30 100.0 38 TTTGGTTTGA .............................. ATTTCAAGTTTCATCTTCTACCACAGCCCAATCATTAG 2771599 30 100.0 39 CAATCATTAG .............................. CCGTCAGCCAACCGGAAGACGGTTCGGGTTTGGTCGACA 2771668 30 100.0 37 TTGGTCGACA .............................. GCCACGGCCACAATCGCGGCGGCCAATACCACAAATG 2771735 30 100.0 37 ACCACAAATG .............................. GCGCGAAAGTGGTCGCTGGAAACCAGGTGGATGGTAC 2771802 30 100.0 35 TGGATGGTAC .............................. GAGAGGGTGCATCCGGCCACCGCCCAGTGCCCGAT 2771867 30 100.0 39 AGTGCCCGAT .............................. TCATTATCACCGAAACGCAACACAACGTCCTGGTGACGG 2771936 30 100.0 39 CTGGTGACGG .............................. AAGAACATGATCAGCCAATGCCGAGAGTTCCCCAGCCAA 2772005 30 100.0 38 CCCCAGCCAA .............................. GGTCGACAGGGTGAAGGACGACGGCCGCAAAGACCGCA 2772073 30 100.0 38 AAAGACCGCA .............................. CCCGCGAAAAAGCAGTGCTACTTCGTGGCATATGGAAA 2772141 30 100.0 39 CATATGGAAA .............................. GAAGAGGAGCGGATCGAGGCGATTAACGAACTACAACAG 2772210 30 100.0 35 ACTACAACAG .............................. CATGTGGCTCCGAAGCAACCTCGCCTTCATCGCTG 2772275 30 100.0 38 TTCATCGCTG .............................. CGTATCGTCTCATCCCCTGAAACCCCCTTGGTATACTC 2772343 30 100.0 38 TGGTATACTC .............................. TCCTCTATGAGTTCCTGCGCGTAGCTCTGGGCCTCCGT 2772411 30 100.0 35 GGGCCTCCGT .............................. CTGATGGGGCCATTTTTTGGGAACCGACAGATTGC 2772476 30 100.0 37 GACAGATTGC .............................. ACCGTCGGGTATCCGTACTCGTGCGGAACATCGACTT 2772543 30 100.0 35 ACATCGACTT .............................. AGAAAAAGTGGGGATTGTCTGCCGGGCTGATCCGT 2772608 30 100.0 40 GCTGATCCGT .............................. TAGGTTGAGTCCTTGTGCGCGTTGAACGTCTTGCGCACGA 2772678 30 100.0 36 TTGCGCACGA .............................. CATGGCGGGCGGTCCGAACCCGATCCACGACGGTTA 2772744 30 100.0 39 ACGACGGTTA .............................. ACACATCTCCATGACACGGCTTCGGTGCACACCAACAGC 2772813 30 100.0 39 CACCAACAGC .............................. CAAGGAGGGAGACCGAAAATGGACCCAAGGGATGCACAA 2772882 30 100.0 38 GGATGCACAA .............................. CCATCTTGACTCCTCCTTCGCTCTTTCTGACTATACTT 2772950 30 100.0 38 GACTATACTT .............................. CCGGAACCTGAAAGTGTGGTGGACGAGACGCCGCCCAT 2773018 30 100.0 37 CGCCGCCCAT .............................. TCAGCAGCAAAGTCAACAGCAGATGGCGAGTTTTCAA 2773085 30 100.0 36 GAGTTTTCAA .............................. AAGAAGATCGGTGGGAAAAATTGATTGATCTTCAGA 2773151 30 100.0 38 GATCTTCAGA .............................. TCGACAGTCTGCCGAGTTATGCCAGAGCCTTGATCCAC 2773219 30 100.0 39 CTTGATCCAC .............................. ACCGTACAAGGGTCGGGAAGTAGGCACATGGCTGAGGGA 2773288 30 100.0 37 GGCTGAGGGA .............................. GCCTGGTCCATGAATTGACCGAGGTCCAACAGACTGA 2773355 30 100.0 39 AACAGACTGA .............................. AGTACAAGCAGCAGGGGCTGGGGTCTATACATTGCCAAA 2773424 30 100.0 40 CATTGCCAAA .............................. GAGACTTTCCCGAAACCGGCGCGGCTTTGGTTTGGTTTGA 2773494 30 100.0 39 TTTGGTTTGA .............................. GCGTCGACCGCTTCGGCCCCTGATACCAGTGGTTACCAA 2773563 30 100.0 38 TGGTTACCAA .............................. AAATCCTGGGCCAGCGCATGGCTCGACCGTCCAAACCG 2773631 30 100.0 35 GTCCAAACCG .............................. TTGCCAGCCCTTGGGACTCTGGGCATTATACGGCT 2773696 30 100.0 38 TTATACGGCT .............................. CCATCTTGATTCCTCCTTCGCTCTTTCTGATTATACTT 2773764 30 100.0 37 GATTATACTT .............................. ACACTGAGTCAGATTTCACGATGGGCCGGTACGATGA 2773831 30 100.0 40 GGTACGATGA .............................. ACTTCATACCGCCCGACGGATACCCACCGTCCGTCCCTGG 2773901 30 100.0 38 CCGTCCCTGG .............................. CCGGGAATCGGCGCGTGAAGTACATGCCACATGACGGA 2773969 30 100.0 38 ACATGACGGA .............................. TGGAAAATATCACCTCGCATGTTTCAAGCCTCCCTTAT 2774037 30 100.0 39 CCTCCCTTAT .............................. CCAAGGGAGTATGAGCTATCCACGATATACTACGATCCA 2774106 30 100.0 38 CTACGATCCA .............................. CGCTTCAAAGTTGTAATAGCAAGATTAGTTCGACAGTT 2774174 30 100.0 35 TTCGACAGTT .............................. TTCAATTTATCCATTGCGATGCACCCACCATGCCA 2774239 30 100.0 38 CACCATGCCA .............................. TATTGCCCGGCCTGCTGAAATTGCCACCCGAGAACGTC 2774307 30 100.0 37 CGAGAACGTC .............................. GCAGATGACCAAGCCCGCTGGGGATGCCTTCGTTGAA 2774374 30 100.0 39 CTTCGTTGAA .............................. CCCTGTCCGCACTCCCCACGCCGCTCCGGGGTTCTCCCG 2774443 30 100.0 39 GGTTCTCCCG .............................. GATGTTTTTCTGGTTTGGTTAGGTTAGGTTTGGTTAGGT 2774512 30 100.0 40 TTGGTTAGGT .............................. TCGAAGAACTGCGGATTGCGATTTATGAGCTAGCCGTTTG 2774582 30 100.0 35 TAGCCGTTTG .............................. CTTGACGGCCTGCCAAACGCGCATTTCTTGGGGCG 2774647 30 100.0 37 TCTTGGGGCG .............................. CGGTCCTGTGGATCACCCACGCGCCGCATTATCACCT 2774714 30 100.0 38 ATTATCACCT .............................. CTGCGGTATCGATGATGATTGCCGTATTTCTTGGGGAG 2774782 30 100.0 38 TCTTGGGGAG .............................. AGCAAAGCCGCTTATGTTTGGAATTGGAGGACTTGCAG 2774850 30 100.0 37 GGACTTGCAG .............................. TTGTTGGGGGCGGCGGAGGAGGGATCACTACTTCTTC 2774917 30 100.0 39 CTACTTCTTC .............................. ACCACGAGAGCAATGCTTGGTTCTGGTCCTCTCCTGGCG 2774986 30 100.0 39 TCTCCTGGCG .............................. TCGCTTCATCCTTTCTCAGTGCCTTTCCAATGGCCCTGT 2775055 30 100.0 40 ATGGCCCTGT .............................. TAGGCTGTTGTTGTTACGATCTCTACAAACGGCTAGCTCA 2775125 30 100.0 35 GGCTAGCTCA .............................. GATGCCGGACCTAAAGGAACTCGGTGAGTACATTA 2775190 30 100.0 38 GAGTACATTA .............................. AAGGACTATGAGGCCGCCAAAAGGATGTGTGGAGAGCA 2775258 30 100.0 37 GTGGAGAGCA .............................. GAGACGGGTGGCCTATGGAAGCAGATCACACTCACGC 2775325 30 100.0 38 ACACTCACGC .............................. GAAAACACAGCCGTCGGCAACGGATCAGAGCGCAACTG 2775393 30 100.0 38 AGCGCAACTG .............................. CTGTCGATGGAGTGCCCGAGCAGGTCGATGTACTCCGT 2775461 30 100.0 38 TGTACTCCGT .............................. ATGGCCGCCAATCTAGCGGGCGTTGAAGTCATGCACGT 2775529 30 100.0 39 TCATGCACGT .............................. CATATGCGTGGCGGAGCGACTGATGTTGCTCCGTTGCGC 2775598 30 100.0 35 TCCGTTGCGC .............................. TTCGCAAAATTGTTAAACAGTAGTGCCAAAAGAAA 2775663 30 100.0 35 CCAAAAGAAA .............................. GAGTCTGTCCTGAAGGCCGCTGACGAGGCTGCGAG 2775728 30 100.0 38 AGGCTGCGAG .............................. CTTCGTTTGTGGGCCTCGACTTTCACCGCCGCCTCTTC 2775796 30 100.0 37 CCGCCTCTTC .............................. GAAACGATGTGAAAGACCCCGTATTTGTCGAAGTACG 2775863 30 100.0 37 TCGAAGTACG .............................. CATCGAACACGATCAATACACCGCATGGTACGACGAG 2775930 30 100.0 37 GTACGACGAG .............................. CACGCCAGTCCTGGACTCATGTTCCAGGCTTCCGCCA 2775997 30 100.0 40 GCTTCCGCCA .............................. TCGTTGTACTTGCTTCGCTTCGACGGGTCCAGGTTGTCCC 2776067 30 100.0 38 AGGTTGTCCC .............................. GGATTCAGGCCATGGAGCAGTTGCCACCTCCAGACTAG 2776135 30 100.0 37 TCCAGACTAG .............................. ACAAATCCAAAAGCCCATTTGGCGCCGGGGTCCCGGT 2776202 30 100.0 39 GGGTCCCGGT .............................. CCTGTCTGCGGACCAATACCAGGCTGTCGCGCTGGACAA 2776271 30 100.0 38 CGCTGGACAA .............................. TTCAACTCGGTCTGATCTGATAGCCAGATCGAAGAAAA 2776339 30 100.0 37 TCGAAGAAAA .............................. TTTTGTAGAGAAAGGGAACGTTTGCCGTTGCGGACGG 2776406 30 100.0 37 TTGCGGACGG .............................. TGTTAAAAGCCGGTTGATGCAATATCTCTGATACGGC 2776473 30 100.0 38 CTGATACGGC .............................. TCCACGATTGACGCCGGTAGCGCCGCGGTCCTGACCAA 2776541 30 100.0 39 TCCTGACCAA .............................. TCTTGGGTTCGACCAGCCCGGGTTCAGCATCCCCCCCTT 2776610 30 100.0 35 TCCCCCCCTT .............................. TGTTCAATATTTCCAATTTGTGTCCCAATATCTCC 2776675 30 100.0 38 CAATATCTCC .............................. GATAAAAACGGGAATCCGGCAACTCCATTTTTATCGCT 2776743 30 100.0 37 TTTTATCGCT .............................. TTCAGCATCGTGGCGATCTTCGCCCGGGTCATGGCAG 2776810 30 100.0 39 GTCATGGCAG .............................. AGTACAAGCAGCAGGGGCTGGGATCTATACATTGCCAAA 2776879 30 100.0 37 CATTGCCAAA .............................. GTTGAAACGAATATCGGGTTGACGGCAAGTGAATTAT 2776946 30 100.0 38 AGTGAATTAT .............................. TCCGGGACATTGACAAATGTGTCAAACGGAACATATAA 2777014 30 100.0 40 GAACATATAA .............................. TGGAGATGTAGCTCGAAAAGATTTCACCACCCGTCACCCG 2777084 30 100.0 38 CCGTCACCCG .............................. CCATCTTGACTCCTCCTTCGCTCTTTCTGATTATACTT 2777152 30 100.0 35 GATTATACTT .............................. CCCCTGAAATGTTTTCGTCACATCGTGGGTCAACC 2777217 30 100.0 37 TGGGTCAACC .............................. AATCGTCTTACCGAGCCGTTCCCCGCCGTCCAACAAG 2777284 30 100.0 37 GTCCAACAAG .............................. GCATACTCGGCAAACCTCGCCAATCGCCACAAGTCGA 2777351 30 100.0 35 CACAAGTCGA .............................. CGGAAGAAGATGGAGGAGTTCTGCGACAGGGTTGA 2777416 30 100.0 37 ACAGGGTTGA .............................. CATATGTGGACCTTTCGGATTTGGCGATGGTCCTGGA 2777483 30 100.0 38 TGGTCCTGGA .............................. CTAACGATGGTCCAAGGGCCGCACGGCGAGTACATCTC 2777551 30 100.0 38 AGTACATCTC .............................. TCGGCAACCCTTCGAACACTCTTTTTCGTCTACCTCGT 2777619 30 100.0 35 TCTACCTCGT .............................. TTTTTACGACCATGAAACCAGGCACGCCGGAATGG 2777684 30 100.0 38 GCCGGAATGG .............................. TTTGCGCGGCCCGGTCAGGGTAGTGTGGACCATGAGGC 2777752 30 100.0 41 ACCATGAGGC .............................. GAGTCCGGCACAAGAACCAAATCCGGGTCCCCCGTCACGGC 2777823 30 100.0 37 CCGTCACGGC .............................. TATCTATCGTCATTGACCGATTATGATTTTTGGATAG 2777890 30 100.0 36 TTTTGGATAG .............................. TTTGATAAGTCTTCTGCATACCCCGGGCCAGCCGGG 2777956 30 100.0 37 GCCAGCCGGG .............................. GTGGAATCTGTCATCTCTCCGGGCCCGAACACAGTGT 2778023 30 100.0 36 AACACAGTGT .............................. CCCATGCGTCACTCCTGCTGTCGCAGGGAGTCCATC 2778089 30 100.0 38 GGAGTCCATC .............................. CCCTGCGTATTTAATCATGTTCTCAATCATATCGCTGG 2778157 30 100.0 34 ATATCGCTGG .............................. GATGGGGACCACGCCGGATCGCGTCGTCTTCGAA 2778221 30 100.0 35 CGTCTTCGAA .............................. CACGTGCCCCACCCCATCAGTCCTCCACGAACTCG 2778286 30 100.0 38 CACGAACTCG .............................. TGGCACTGCAGGATGAACGGGTGGCCACGTTGCTCGAC 2778354 30 100.0 39 GTTGCTCGAC .............................. GCGCCTTCCTGGTACAGACCTGGAACGCCATCGCCACCA 2778423 30 100.0 37 ATCGCCACCA .............................. ACATGCGAGTCACCGAGAGCGCGGTCGACGAGGTTTG 2778490 30 100.0 36 ACGAGGTTTG .............................. GGAGGGATTTGGATGATATTGACCATGATTGAAGAA 2778556 30 100.0 35 GATTGAAGAA .............................. TTCGTCGACGTAGCGGACGTCCGGGGATTCGCGGA 2778621 30 100.0 GATTCGCGGA .............................. CCCCCATTTT ========== ====== ====== ====== ========== ============================== 126 30 37 GTTTCCATTCCTCATAGGCACGCTACGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [7,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.90,-2.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [51.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [188,416] Score: 0.18/0.18 # # Final direction: R [0.27,0.92 Confidence: MEDIUM] >NC_014103 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1377468 29 100.0 43 NNNNNNNNNN ............................. TAGAACGGCGAGAAGAGCGGCGAGTAGAACGGCGAGAAGAACG 1377540 29 100.0 43 NNNNNNNNNN ............................. AAGAGCGGCGAGAAGAGCGGCGAGTAGAACGGCGAGAAGAGCG 1377612 29 100.0 19 NNNNNNNNNN ............................. TAGAACGGCGAGAAGAGCG 1377660 29 100.0 31 NNNNNNNNNN ............................. AAGAGCGGCGAGTAGAACGGCGAGTAGAACG 1377720 29 100.0 31 NNNNNNNNNN ............................. AAGAACCACGAGAAGAACGACGAGAAGAACC 1377780 29 100.0 1 NNNNNNNNNN A........A.CA....A......A.... NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 6 29 33 GCGAGAAGAGCGGCGAGTAGAACGGCGAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [9,1] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [219,302] Score: 0/0.18 # # Final direction: F [0.78,0 Confidence: HIGH] >NC_014106 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1204492 28 100.0 33 NNNNNNNNNN TTTCAG...................... CAACCTAAGGCCAAGGAAGAGCCTTCAGTTACT 1204553 28 100.0 33 NNNNNNNNNN ............................ AGTCATTGCCGCACAACGTTAGGATTTTGATGA 1204614 28 100.0 33 NNNNNNNNNN ............................ TTGCCCAAAAATTAGATAAAATTCAGGCTTTTG 1204675 28 100.0 33 NNNNNNNNNN ............................ GTTGATTGTGGTTGTAGGTGATAGTCCTGCATA 1204736 28 100.0 33 NNNNNNNNNN ............................ TCTTGCGTTTTGGCGTATAGATCAGAGGCTTAA 1204797 28 100.0 33 NNNNNNNNNN ............................ TATTAATTCAGGAAGGAAAAGATTAATGCTTTA 1204858 28 100.0 33 NNNNNNNNNN ............................ GGAGTCACATGACGGAATTATCAGATTAATTGA 1204919 28 100.0 33 NNNNNNNNNN ............................ TGTAATTTTCCGTCTTTCAGATCATCTGATAAA 1204980 28 100.0 33 NNNNNNNNNN ............................ ATGATGATGCAATTAATGCAGTAGCAAACAGTA 1205041 28 100.0 33 NNNNNNNNNN ............................ ACTGTGAGCGGCTTTCATTATGTCAACATGACA 1205102 28 100.0 33 NNNNNNNNNN ............................ ACAAGGAACTGGTTAGAAGCATATTGAAAAGGA 1205163 28 100.0 33 NNNNNNNNNN ............................ AGTTAATCAATGGTTTAGATGCACAGAACGTTG 1205224 28 100.0 33 NNNNNNNNNN ............................ TGGCAAACAGACCCGTGGTTTTGCTAAAAATAG 1205285 28 100.0 33 NNNNNNNNNN ............................ CACCTATGCTACTTTACTAAGGCTAACAAATCG 1205346 28 100.0 33 NNNNNNNNNN ............................ CAATCATATTAATGCCTTCTTTCTCAAAATTCA 1205407 28 100.0 33 NNNNNNNNNN ............................ AGAATCACCTCCTAATTTACGAGATGATTCTAG 1205468 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 17 28 33 GGATCACCTCCACACACGTGGAGAATAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [9,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-8.80,-9.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [99,185] Score: 0/0.18 # # Final direction: R [0.37,0.41 Confidence: LOW] >NC_014106 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1226786 29 100.0 32 NNNNNNNNNN GTA.CACT...A....GT........... AGCATTCCCATATTTCTCATTCACTGCACCAA 1226847 29 100.0 32 NNNNNNNNNN ............................. ATCCTCGTACGCTGTTATCTTCTACGCACTTA 1226908 29 100.0 32 NNNNNNNNNN ............................. GGATTAACTGCAGTCAAGGCCAATTCTTTAGA 1226969 29 100.0 32 NNNNNNNNNN ............................. TTTTGTCATCAACATTAAAATAAATGAGTTTA 1227030 29 100.0 32 NNNNNNNNNN ............................. GAACCCGTTGTCCCACCTAATGCGTTGAATTC 1227091 29 100.0 33 NNNNNNNNNN ............................. ATGCTCCAATCGATCGTTTGACTGATAATCAAC 1227153 29 100.0 32 NNNNNNNNNN ............................. GTAGCAACTGCCCCAACGAGAGCACTGTCCAT 1227214 29 100.0 32 NNNNNNNNNN G............................ TCTTTATCAACCAAATTTAACGTTTGAGCATT 1227275 29 100.0 32 NNNNNNNNNN G............................ AGAATGCTGTCGCAAAAGCCAAGGCGTACGGT 1227336 29 100.0 32 NNNNNNNNNN ............................. AAATGTTGTTGGACCAGCAGCACCCCAAACAT 1227397 29 100.0 32 NNNNNNNNNN ............................. AAAGGCACTTCAGTAGGATATGCCCAAAGAGC 1227458 29 100.0 32 NNNNNNNNNN ............................. AGCACAAGGTACATCAAGACCGATGAACGGTA 1227519 29 100.0 32 NNNNNNNNNN ............................. CAGGTCAGTATGAATGGTTGCAAATTTGTGAT 1227580 29 100.0 32 NNNNNNNNNN ............................. TTTCTTTGCGTCAAAACTTGATTGTCCTCATC 1227641 29 100.0 32 NNNNNNNNNN ............................. AATGATGATTGGGGCAGTGATGAAACTGGCAC 1227702 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 16 29 32 AGGATCACCTCCACATACGTGGAGAATAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:51.72%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-8.80,-9.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [58.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [351,434] Score: 0/0.18 # # Final direction: R [0,0.68 Confidence: HIGH] >NC_014106 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1230580 28 100.0 33 AGAGCTGTCA ............................ CGATATTTGGAGTTCCCTCTTTAATTATTTTAA 1230641 28 100.0 33 ATTATTTTAA ............................ TCATAATCTTGCCCACCGCCTGCAGGTCGTGGA 1230702 28 100.0 33 AGGTCGTGGA ............................ GATTTGCTGTTACGCCGCAAATTGACAGTACCA 1230763 28 100.0 33 GACAGTACCA ............................ AGCAGCGATTAATCCTAATGGTGGAGCAAGTGG 1230824 28 100.0 32 GAGCAAGTGG ............................ TAGTTACCCCCCCAATTTGCTTTTTGAGGTCG 1230884 28 100.0 TTTGAGGTCG ............................ ACTAAATGAT ========== ====== ====== ====== ========== ============================ 6 28 32 GGATCACCTCCACACTCGTGGAGAATAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-8.80,-9.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [729,220] Score: 0.18/0.18 # # Final direction: F [0.55,0.27 Confidence: MEDIUM] >NC_014122 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1082729 37 100.0 35 GACATTAAGG ..................................... TAAGTATCAATTTCTAATGTACCTTGGGTATCTGG 1082801 37 100.0 36 GGGTATCTGG ..................................... CTTGTGCTTTTTCTTCTTGCCATTATCTCATTCCTC 1082874 37 100.0 36 CTCATTCCTC ..................................... AGATGGACGGGTTGTTTTCTCATATCAATGATTTGT 1082947 37 100.0 38 AATGATTTGT ..................................... TTCACAGGAGTATGTTTAGGTGGTGGAAAATCAGATTC 1083022 37 100.0 37 AATCAGATTC ..................................... ATAAAATAAGAGCGTATTCTCTAAAAAACTTTGGCTT 1083096 37 100.0 38 ACTTTGGCTT ..................................... CCCAGCAGATCTATGTCCTCCATTCCCGAGGAAAATGT 1083171 37 100.0 AGGAAAATGT ..................................... CTTTTGCAGTTTTTAGGATGTGCATTTAACCAAACAAAA ========== ====== ====== ====== ========== ===================================== 7 37 36 GTTTGAATCGCCAGTCCATTAAAACAAGGATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:59.46%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.40,-3.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [454,83] Score: 0.18/0.18 # # Final direction: F [0.45,0.37 Confidence: LOW] >NC_014122 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 109860 30 100.0 37 ATTTTGCCTT .............................. AGTAGTTGAGCACAGATTTCTCTGTGAATAACATCAA 109927 30 100.0 35 ATAACATCAA .............................. CATTTACATTTTGCATTTCTTATCATGCACAACTC 109992 30 100.0 TGCACAACTC .............................. GGTTAATCTATAATGCACAAACAAAAACATTAGGAGAA ========== ====== ====== ====== ========== ============================== 3 30 36 GTAAAATAACGCCCCTAAGGGGATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-6.00,-5.90] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [445,120] Score: 0.18/0.18 # # Final direction: F [0.18,0 Confidence: MEDIUM] >NC_014122 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1111056 37 100.0 36 GACATTAAGG ..................................... CGATGGTTTAGAAGCCCTAACACAATTAATAGAAAA 1111129 37 100.0 37 TAATAGAAAA ..................................... CTGGAGTTCCAACAACATACTTTTTTCTCCAAGGCAC 1111203 37 100.0 36 TCCAAGGCAC ..................................... AAGCAGAGGTAAATACAATAGATAACGAATTAGTGA 1111276 37 100.0 39 GAATTAGTGA ..................................... AAATTCTTCTTTTTAACTTTTCTACTATCTCCTGATAAG 1111352 37 100.0 36 TCCTGATAAG ..................................... GCATTAGTTACCATATCTGCATATCTCAACGTAAAC 1111425 37 100.0 CAACGTAAAC ..................................... TGAATGTTCAT ========== ====== ====== ====== ========== ===================================== 6 37 36 GTTTGAATCGCCAGTCCATTAAAACAAGGATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:59.46%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.40,-3.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [577,140] Score: 0.18/0.18 # # Final direction: R [0.18,0.37 Confidence: MEDIUM] >NC_014122 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1111600 37 100.0 35 CAAAAGACAT ..................................... TTTTTGTTGGCTCAGGAGTTGGTGGGAAGATAATT 1111672 37 100.0 35 GAAGATAATT ..................................... ACACTAACTTTGGGATTTTGTCTAGGGGTATTCTG 1111744 37 100.0 36 GGGTATTCTG ..................................... ATCTTGACGAAAGAACCCAAGAATCCCATATCCATT 1111817 37 100.0 36 CATATCCATT ..................................... TCAACATAAATTCTCTTAGCACATATGTATTCCTCA 1111890 37 100.0 35 GTATTCCTCA ..................................... ACGTGGATAAGAGGTATGTGACATACTACATCATA 1111962 37 100.0 CTACATCATA ..................................... TAAAATGATGC ========== ====== ====== ====== ========== ===================================== 6 37 35 GTTTGAATCGCCAGTCCATTAAAACAAGGATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:59.46%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.40,-3.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [140,1936] Score: 0.18/0.18 # # Final direction: R [0,0.55 Confidence: HIGH] >NC_014122 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1119926 30 86.7 36 TTGTTATTTA -...T...T.T................... TGTGCACTACTAGTTGAGGTGAAAAAAGATGCTGTA 1119992 30 100.0 38 AGATGCTGTA .............................. TGGAGTAGGAAAATCATATACTGCTCTACATCTTGCAA 1120060 30 100.0 44 CATCTTGCAA .............................. TGCTTTTCAATTGGCAAATTGAGCCTGTCAAATAGCTTATAATC 1120134 30 100.0 37 GCTTATAATC .............................. ACACTCCATCTTATCACCTATTTCCTTTTCTGGATAT 1120201 30 100.0 41 TTCTGGATAT .............................. TACTGAAAAATGTAAAGCTGCTGGAGGTGTGCAAAATGAGA 1120272 30 100.0 40 CAAAATGAGA .............................. GATTGAATATCTTCCAAATGGAACCCTAACTAATAACATT 1120342 30 100.0 39 TAATAACATT .............................. CTTACCATAACTTCATTGTGGATTTTATCCAGTAACTCA 1120411 30 100.0 40 CAGTAACTCA .............................. TGTATTGTATATAGGGGATATGAATGAGGAACTATGCAAT 1120481 30 100.0 37 ACTATGCAAT .............................. TTGCCAGCAGGAAAATAGACCTCTCTAAGCCAATTCC 1120548 30 100.0 37 AGCCAATTCC .............................. ATAACGAAAACAAAAATAAGAGGTGAGAGAGATGGAA 1120615 30 100.0 32 AGAGATGGAA .............................. CTTAAATCATACGCCTTCAATATATCAACATA 1120677 30 100.0 38 TATCAACATA .............................. GACATTACTCTGCTCAGTAGCAAGTGTAAAGTTGTTTG 1120745 30 100.0 37 AAGTTGTTTG .............................. TTACGACAAGATTTTGGGACATGGCTTGACTTTTTTT 1120812 30 100.0 34 GACTTTTTTT .............................. CTCCATCTTTCACAATCAGAACTATCTCATCCCC 1120876 30 100.0 TCTCATCCCC .............................. AAGGCAAAAT ========== ====== ====== ====== ========== ============================== 15 30 37 GTTTCCATCCCCTTAGGGGCGTTATTTTAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-5.90,-6.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [17,442] Score: 0.18/0.18 # # Final direction: R [0,0.59 Confidence: HIGH] >NC_014122 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 235820 30 96.7 42 AACACTTCTC .............A................ TTTATTAGGGTTAAAGAAAATGGATTTATATGCGATTATGTG 235892 30 100.0 37 CGATTATGTG .............................. AGAATTTAAAAGTGTTATCATCTACGGAAAGAAAAGA 235959 30 100.0 35 AAAGAAAAGA .............................. TTTGAACGAATTCAGAAATAGAGCAATAATAGAAT 236024 30 100.0 38 ATAATAGAAT .............................. GATGTGATATTCAGAATAAAACTACCTGATGGGTTTAT 236092 30 100.0 33 ATGGGTTTAT .............................. TTAAGACATTATATGATGAACTGCCTAAAATAA 236155 30 100.0 38 CCTAAAATAA .............................. CTGGAGACTTCTGAAGCATTAAAGGCTCAGCTTGGTTC 236223 30 100.0 35 AGCTTGGTTC .............................. GAATTTTCAGTTATATTTGAAATTTCAATCACTGC 236288 30 100.0 36 CAATCACTGC .............................. TTTAATCTTTTTTGTGATGCTAACTTAATTGCATAT 236354 30 100.0 AATTGCATAT .............................. AAGGCAAAAT ========== ====== ====== ====== ========== ============================== 9 30 36 GTTTCCATCCCCTTAGGGGCGTTATTTTAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-5.90,-6.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [225,426] Score: 0/0.18 # # Final direction: R [0,0.68 Confidence: HIGH] >NC_014122 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1295745 30 100.0 35 ATTTTGCCTT .............................. GATAGTTATTATGGGATTGCTAAAAATATGGTATC 1295810 30 100.0 37 ATATGGTATC .............................. TGCGGGGCTAAACAAAGAAAAAGGGGGGTTGAGAATG 1295877 30 100.0 37 GTTGAGAATG .............................. TATTTTTCAAGGTTGTTTAAAACCTCTTCAATTTCCT 1295944 30 100.0 TCAATTTCCT .............................. TTAAGAGATA ========== ====== ====== ====== ========== ============================== 4 30 36 GTAAAATAACGCCCCTAAGGGGATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-6.00,-5.90] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [415,48] Score: 0.18/0.18 # # Final direction: F [0.18,0 Confidence: MEDIUM] >NC_014122 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 245939 37 100.0 36 NNNNNNNNNN ..................................... TAAATTCTCCAAGGTCACAAATGGTTTTAAACGCGT 246012 37 100.0 35 NNNNNNNNNN ..................................... TCAGTGATTCTTTGTAAGATGTATGTGGAGATACA 246084 37 100.0 37 NNNNNNNNNN ..................................... AATTTATCTTCTAATATATCTTTTGCGTAGTATGATA 246158 37 100.0 35 NNNNNNNNNN ..................................... AGTCGTTTCTTGCTAATTCCCAACTATATATATAA 246230 37 100.0 38 NNNNNNNNNN ..................................... ACCCCAAATCAATTATCACATCGACTAAGTGTGGGGTA 246305 37 100.0 35 NNNNNNNNNN ..................................... TGTTCACTTTTCTCAAGTAACTTCAAGAGTTTCTG 246377 37 100.0 39 NNNNNNNNNN ..................................... TTTCCCTCATACTCAAACTGATACCCAAATCCCCAACTG 246453 37 100.0 38 NNNNNNNNNN ..................................... ACCCCAAATCAATTATCACATCGACTAAGTGTGGGGTA 246528 37 100.0 50 NNNNNNNNNN ..................................... TGTAAATACTGTAAATTATCATTAGATACATACGATAGTCATAAGATATA 246615 37 100.0 34 NNNNNNNNNN ..................................... TATACTATAACCGCTAAGTAATTAACCGACAAAA 246686 37 100.0 38 NNNNNNNNNN ..................................... AGTATAGATGGTAAAGAGCAGGAATGTCCTGAAATTGT 246761 37 100.0 34 NNNNNNNNNN ..................................... CTGTTATCAGTCCTTTTTTTCTGAGATATTGCAA 246832 37 100.0 37 NNNNNNNNNN ..................................... AATTACGGGTATTTTACAACAGCAGTAAGCCAAGCCA 246906 37 100.0 39 NNNNNNNNNN ..................................... TGAGTTCATCTTTTCCAGATCTTATAATATCTTCAATAT 246982 37 100.0 36 NNNNNNNNNN ..................................... AAACATTCATAATAAAACCTCTTCCAGCCATTCCTT 247055 37 100.0 37 NNNNNNNNNN ..................................... AGCAAGAATTTCTTTTCTAAATTTTCAGCATTGAAGT 247129 37 100.0 38 NNNNNNNNNN ..................................... AGCTCTTCTTTGAGCTTTTCTAATGTCAATTTTAGAGA 247204 37 100.0 35 NNNNNNNNNN ..................................... TAAATCAAATTTATTGATGCTTCTATTATTGCCTT 247276 37 100.0 38 NNNNNNNNNN ..................................... GTAAAGTTTCCAACGTTAGCATTAAATCAATTGGAGAA 247351 37 100.0 42 NNNNNNNNNN ..................................... TTACTTTTGAGAACTTTTTTAATAACGAAATTAAAGATTATA 247430 37 100.0 42 NNNNNNNNNN ..................................... TTACTTTTGAGAACTTTTTTAATAACGAAATTAAAGATTATA 247509 37 100.0 34 NNNNNNNNNN ..................................... CTAACTATCACATCTATATTTATGAATTCATCAA 247580 37 100.0 1 NNNNNNNNNN ...................................T. NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 23 37 37 GTTTGAATCGCCAGTCCATTAAAACAAGGATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:59.46%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.40,-3.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [73.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [519,45] Score: 0.18/0.18 # # Final direction: R [0.59,0.64 Confidence: LOW] >NC_014122 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 531383 37 100.0 38 AATAATATTA ..................................... AGGGTGAAACCAGTTGCTGGAATGTTCGACTATGACAT 531458 37 100.0 35 ACTATGACAT ..................................... CTAAGCTCTCTTCTCTCTAACTTGAGAAATAAAGC 531530 37 100.0 38 GAAATAAAGC ..................................... GTGATAGAAACATCTTTTTTATGAATTGTTTGATTGTA 531605 37 100.0 36 TTTGATTGTA ..................................... CATTTTGGAGCCATAGGGATAATATGGAGCTTACAA 531678 37 100.0 36 GAGCTTACAA ..................................... ATGAAGATTGGCAAATGATTAGGCTATTATTCAAGG 531751 37 100.0 38 TTATTCAAGG ..................................... TGTTCCAAACACAGATGAGTGGTTAGATTGGGCTATCA 531826 37 100.0 37 TGGGCTATCA ..................................... GAAAATCTCTTAAAATACTTAATGAAAATGAAAATCT 531900 37 100.0 35 ATGAAAATCT ..................................... ACACAACAACTTTACGACTTCCTGAAGTGTTTACA 531972 37 100.0 40 AGTGTTTACA ..................................... AGTGCAGATGAAATACAAACTAGAAGAAAACCATTGAAGA 532049 37 100.0 36 CCATTGAAGA ..................................... TTTTAGACAAACTAAAGAAATGGGGGCTAATAGAAA 532122 37 100.0 CTAATAGAAA ..................................... CCTTAATGTC ========== ====== ====== ====== ========== ===================================== 11 37 36 GTTTCCATCCTTGTTTTAATGGACTGGCGATTCAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:59.46%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.50,-2.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [86.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [96,1322] Score: 0.18/0.18 # # Final direction: F [0.64,0.18 Confidence: MEDIUM] >NC_014122 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 604543 37 100.0 37 NNNNNNNNNN ..................................... TCAAGCCGTCCTCAATTTTTATTTTTTGATCAACAAT 604617 37 100.0 36 NNNNNNNNNN ..................................... GATACTCAAGAGAACTATATCTTGAATATGAGAAAG 604690 37 100.0 36 NNNNNNNNNN ..................................... TTCTGGTAAGTCTTCTAATTCATTAATTATCTTTTC 604763 37 100.0 33 NNNNNNNNNN ..................................... CAGGGCTATTACAGTTCCTACAGCTCTATCTAT 604833 37 100.0 36 NNNNNNNNNN ..................................... ATAAAGAGAAAACATGAAGAGATTAAAGAAACAAAG 604906 37 100.0 41 NNNNNNNNNN ..................................... TGATACCCCTAAAAGAGTATTCCTAAGAAAAATAAGAAGAT 604984 37 100.0 36 NNNNNNNNNN ..................................... TGAAAAGGCATTAATGAGTAGAATTATTCAATATAC 605057 37 100.0 36 NNNNNNNNNN ..................................... AAATGAATGAAATAGAATTAAGTGGGGGCATAAAAA 605130 37 100.0 47 NNNNNNNNNN ..................................... AATGTATAGAGGAAAATTTGGTGTTAGTGGGTCAATGACAGTGTTGG 605214 37 100.0 36 NNNNNNNNNN ..................................... AATCCGGGGAGTATCGTCCAATATCCAGAACAGGAT 605287 37 100.0 38 NNNNNNNNNN ..................................... GGAAAAAATAGAATGGTTAGAAAAAGAACAAGAAGAGA 605362 37 100.0 38 NNNNNNNNNN ..................................... AAATGGTGATCCAATCACATACATAGATGAGTATAGCA 605437 37 100.0 34 NNNNNNNNNN ..................................... TTATTATATGAAATAATAAGTGAAGTTGAAAAAT 605508 37 100.0 36 NNNNNNNNNN ..................................... GTGTTTTGTGGAAAGTGACAAATGATTCAGAATATT 605581 37 100.0 37 NNNNNNNNNN ..................................... GACAGAGGGGAAGACTACTACGACATGTTGCCAAAAG 605655 37 100.0 36 NNNNNNNNNN ..................................... GACAAAAAAGAAGTTTGAAGAGACAAGAGAAATTTT 605728 37 100.0 1 NNNNNNNNNN ..................................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 17 37 37 GTTTCCATCCTTGTTTTAATGGACTGGTGATTCAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.16%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.50,-2.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [455,678] Score: 0/0.18 # # Final direction: F [0.37,0 Confidence: MEDIUM] >NC_014122 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 715926 30 100.0 38 CTTTCAGATT .............................. TTTTGTTAGAGCATTTAAAGGAGACATACTATTACGAT 715994 30 100.0 43 CTATTACGAT .............................. TAATGTAATATTGGATTTGTCAGTTGTTGAGAAGCTAAAATTT 716067 30 100.0 41 GCTAAAATTT .............................. TATTTAAATTTTTCAATTGATAACTTTTGAATAAATCCAAA 716138 30 100.0 38 TAAATCCAAA .............................. TTACCACCCATTTATTGTTTTGTCGGTTAATTACTTAG 716206 30 100.0 35 AATTACTTAG .............................. CTTTATAAGTTAAAAAATAAAGAATACTACTTTAT 716271 30 96.7 38 ACTACTTTAT ................A............. AAGTTCATTAAAAACCATAGAAATTAGAATATTTAATT 716339 30 100.0 ATATTTAATT .............................. AAGGCAAAAT ========== ====== ====== ====== ========== ============================== 7 30 38 GTTTCCATCCCCTTAGGGGCGTTATTTTAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-5.90,-6.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [162,486] Score: 0.18/0.18 # # Final direction: F [0.41,0.18 Confidence: MEDIUM] >NC_014122 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 767940 37 100.0 35 GACATTAAGG ..................................... ATAAATAGATTAAAGGGGCTGGGATTGATTGATAG 768012 37 100.0 37 TGATTGATAG ..................................... GAAATAATTACCCATTACTTCCTTAAAAAAGCTTAAC 768086 37 100.0 37 AAAGCTTAAC ..................................... AGCTATGTTAGGGTATTTGTACTCCAGTAGTCTGAGC 768160 37 100.0 38 TAGTCTGAGC ..................................... AGGATCAGTATGTCTGGTCTATATAGTTCAAGAATTTT 768235 37 100.0 36 CAAGAATTTT ..................................... GTGGGTTTGGAGTAACTACTCATTCATGATCACCTC 768308 37 100.0 40 TGATCACCTC ..................................... TTGTTTTTTGTATCTATTGATATGAATACTCCAGTTCCAT 768385 37 100.0 CCAGTTCCAT ..................................... CCTCCTTTAGTTTTTCTACGTAAACCTCTTTGAGC ========== ====== ====== ====== ========== ===================================== 7 37 37 GTTTGAATCACCAGTCCATTAAAACAAGGATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.16%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.40,-3.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [567,87] Score: 0.18/0.18 # # Final direction: F [0.45,0.37 Confidence: LOW] >NC_014122 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 826019 30 93.3 40 GTAATAGAGC --............................ TGATTTGATGGAGAAAGAAGCATTTAATTATTTCAGAGAT 826089 30 96.7 43 TTTCAGAGAT .............A................ GGGAGCATTTTTGAAAAAGACGAAAGGCTAAGGTGGAAAGATG 826162 30 96.7 36 TGGAAAGATG ......C....................... GAAAATTGAAAGTAATTTACCTTTACAAGTTATTTC 826228 30 100.0 36 AAGTTATTTC .............................. TTAAAGCAATTGACAGTAGATGACTTCAATGCCGTT 826294 30 100.0 43 CAATGCCGTT .............................. AAATAAGGAAGGGGTAAAAGTCATAGAAATAGGAAGGGAGATT 826367 30 100.0 40 AAGGGAGATT .............................. AGTTATTAGGAACAGGAGTTCAGAAAAGAGTCTCTGCTCC 826437 30 100.0 40 TCTCTGCTCC .............................. ACACAAAAGAAGAGGCTGAGGTTCTTCAGTCTTTGTTTCA 826507 30 100.0 38 CTTTGTTTCA .............................. GAACCCGTCGTAATGAAAGTTGTGAAACACGATGTCTT 826575 30 100.0 39 ACGATGTCTT .............................. TCCAAACTCTCATTCGCTATGTGGAAGAGCACGTTGCAC 826644 30 100.0 36 CACGTTGCAC .............................. AGGAACTCTCTCACCCTCTGATCTTCCATCATCCTG 826710 30 100.0 35 CATCATCCTG .............................. TACTTGATACCCTAATGAACCTTTTAAACTCTGAA 826775 30 96.7 AAACTCTGAA .............A................ AAGGCAAAAT ========== ====== ====== ====== ========== ============================== 12 30 38 GTTTCCATCCCCTTAGGGGCGTTATTTTAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-5.90,-6.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [206,427] Score: 0.18/0.18 # # Final direction: R [0,0.59 Confidence: HIGH] >NC_014122 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 834710 29 100.0 39 AATTTTGCCT ............................. CTTCATCTCTGGTCTTCTCAACATGCAAAATGTGGAATT 834778 29 96.6 39 ATGTGGAATT .C........................... CATGCTCCCCATCTCCACAATCATCTCTAACCTTTTCTA 834846 29 100.0 39 ACCTTTTCTA ............................. CGACAAAATTTAACCTGTTTATAATATCTGTTGTTTTCC 834914 29 100.0 40 GTTGTTTTCC ............................. CAACTGATGTGAAGTTAGTATCATTTACACTTATTGATGC 834983 29 100.0 TTATTGATGC ............................. TTCAGAAATT ========== ====== ====== ====== ========== ============================= 5 29 39 GTAAAATAACGCCCCTAAGGGGATGGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.17%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-5.90,-5.90] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [443,197] Score: 0.18/0.18 # # Final direction: R [0.18,0.41 Confidence: MEDIUM] >NC_014122 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 885289 30 100.0 39 NNNNNNNNNN ............T...T............T TTAAGCTCGAGATGCAAATCATAATCACAACCAGTTTCC 885358 30 100.0 42 NNNNNNNNNN .............................. GAAAGTATAAGGAATTGAATGATGAAGATAGAAAAAAGATTT 885430 30 100.0 31 NNNNNNNNNN .............................. GTATCTATCTCAATCTCATCCTCATCTAAAA 885491 30 100.0 42 NNNNNNNNNN .............................. CTTTTGTGAATTTTGAATAATCGTTTAAAATGCTCTCTATAA 885563 30 100.0 38 NNNNNNNNNN .............................. TATAACCAATCCAAAATAGCACTATTGATAATAGTATA 885631 30 100.0 42 NNNNNNNNNN .............................. GGATATGAGCGTTTCTCCTCTTGGTAATTGCATCAAGTCCGA 885703 30 100.0 35 NNNNNNNNNN .............................. TCAATATCAATTTTCTTATGAATTATTACATTCGG 885768 30 100.0 42 NNNNNNNNNN ..........A................... TTTATATACGTATTTTTTTCTTAATAAATTTATCCAGTAAAA 885840 30 100.0 38 NNNNNNNNNN .............................. GTGATTCTGATGATCTTTCCACCAAGTTTTACATCTAG 885908 30 100.0 41 NNNNNNNNNN .............................. GCTCTCTACATAATGGACAAGATTGCATTCACAAGAGCAAG 885979 30 100.0 40 NNNNNNNNNN .............................. AGGGCAGCCCCAGGCTGCCCCTCATGGGAGAGCCTCCTCC 886049 30 100.0 35 NNNNNNNNNN .............................. AAAGATAAGAGGGAGGAACTCAAGCCCTCCCCCTT 886114 30 100.0 39 NNNNNNNNNN .............................. ATAAATGGCGCTAATATTGATGTTGCAATTGTTTTTTTA 886183 30 100.0 37 NNNNNNNNNN .............................. TATCTAATGACTAACGCGGATAATCCTCCCAACACTA 886250 30 100.0 37 NNNNNNNNNN .............................. TATCTAATGACTAACGCGGATAATCCTCCCAACACTA 886317 30 100.0 38 NNNNNNNNNN .............................. TATTATCTATTTTATACTTGCTAATCTTAATATACCTT 886385 30 100.0 38 NNNNNNNNNN .............................. TATTATCTATTTTATACTTGCTAATCTTAATATACCTT 886453 30 100.0 37 NNNNNNNNNN .............................. CAAATATCGTTTTTTTTTACTTCAACTTTTGTTATAA 886520 30 100.0 1 NNNNNNNNNN .C........A..AT.....A..CTA...T NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 19 30 38 GTAAAATAACGCCCCTAAGGGGATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-6.00,-5.90] Score: 0/0.37 # Array degeneracy analysis suggestion: F [3-9] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [533,234] Score: 0.18/0.18 # # Final direction: F [0.59,0 Confidence: HIGH] >NC_014147 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 28086 28 96.4 32 CCAAGTGGCG ..G......................... GACGGCAGTCCGTGCGTGAGATTTATGGCAAA 28146 28 100.0 32 TTATGGCAAA ............................ TCAAAAATACGATTGATGCGTTGAATGCTACG 28206 28 100.0 32 GAATGCTACG ............................ AAGCTACTAGGGGAAGTTGATATTTTGAAACT 28266 28 100.0 32 TTTTGAAACT ............................ GTCCTACCCAAATGTAGGTCAGTAGCGTGTAA 28326 28 100.0 32 TAGCGTGTAA ............................ CATTACCAATACCATAGCCTGTGAGTGTTGTA 28386 28 100.0 32 GAGTGTTGTA ............................ AGTCCGCACGGCGATAAAAAGCCCATGTTTTC 28446 28 100.0 32 CCATGTTTTC ............................ ATTTATGATAAGTAACATTGCCAACACCTTTA 28506 28 100.0 32 AACACCTTTA ............................ ATGTGCTAAAAACCCAATGGGCGGTCAGCTCT 28566 28 100.0 32 GGTCAGCTCT ............................ GTTGCCGTGCTTGCTTTATTTGCAAGCTGTGC 28626 28 100.0 32 CAAGCTGTGC ............................ AGTATTTTCTCGGCTATTGTTTTTGATTTACT 28686 28 100.0 32 TTGATTTACT ............................ TGCCGCTGCTTGGCTTCGGTAATCAAAACAGC 28746 28 100.0 32 TCAAAACAGC ............................ AACGAAGAAAGAGTACCGACCCCTTTTGGTCG 28806 28 100.0 32 CTTTTGGTCG ............................ CCGCCAAAAATGGTATTAAAGTGTGTGTGTAT 28866 28 100.0 32 GTGTGTGTAT ............................ GTAAACAAGAATTTAATTTTTATCAAGACAAA 28926 28 100.0 32 TCAAGACAAA ............................ TTAAAGATTCCAAAGGGAATTTTGACATCAAG 28986 28 100.0 32 TGACATCAAG ............................ TTGGCAAAGATTTATCAACCCACAGGCACTAT 29046 28 100.0 32 CAGGCACTAT ............................ ATTGGCTGGCGTATTTCGTGCGATTAGCTATT 29106 28 100.0 32 ATTAGCTATT ............................ TTGTTGGCGTACCAAACAAAAGCATATTTGCA 29166 28 100.0 32 CATATTTGCA ............................ CTTATCAGAAGTCCCAAGAGACTCAAGCACAG 29226 28 100.0 33 TCAAGCACAG ............................ TGGTGATTTATATACAGTAAGTAAGGGGGTCGG 29287 28 100.0 32 AGGGGGTCGG ............................ ATAGAGTTTCTGAAATAGATAATCAACCAAAA 29347 28 100.0 32 TCAACCAAAA ............................ TTTGCACAAAGGGGGTACAATTTTGCATGAAA 29407 28 100.0 32 TTGCATGAAA ............................ TACGCATTAACACAGTTGAAAGCTCTGTTAGC 29467 28 100.0 32 CTCTGTTAGC ............................ CCGCTGGGGGCAGAAATCTTATTATAAATAGT 29527 28 100.0 32 TATAAATAGT ............................ TTTGAAGTTTAATCAGCTCAAAAAGATTTGAC 29587 28 100.0 32 AAGATTTGAC ............................ TCTTTGCCCAAAGATGAGCGCGATAACAGCAT 29647 28 100.0 32 ATAACAGCAT ............................ AAATAATGCAGGTATTGTACAGCTATCTAATA 29707 28 100.0 33 CTATCTAATA ............................ CATACCTGTTCACTCGGTGGGGTTGGGGAGCGG 29768 28 100.0 32 TGGGGAGCGG ............................ TTTAGTCTTGGTTAACGCTTCCCATGCAACTG 29828 28 100.0 32 CATGCAACTG ............................ GACGCATTAACACAGTTGAAAGCTCTGTTAGC 29888 28 100.0 32 CTCTGTTAGC ............................ AGTTAATTGCTCTTGCTTTCTTGTCAAAGCTC 29948 28 100.0 32 GTCAAAGCTC ............................ GATATTCGGAGCGGTAATTTGCGTATTTGCTC 30008 28 100.0 32 GTATTTGCTC ............................ TTAATATAAATTGCCCCAGTTGTGCTAACTGG 30068 28 100.0 32 TGCTAACTGG ............................ ACGGTGACTTGATAGGCAGCGGTACGATATCA 30128 28 100.0 33 TACGATATCA ............................ AGCTTACGCCCACCAGCACCCCGCCAAATCAAG 30189 28 100.0 32 CCAAATCAAG ............................ GGATAAACCGCTCAAGCAGTTGGAAAAAAATA 30249 28 100.0 32 GAAAAAAATA ............................ GGCTGGATACAAGTGGTGGCAGGATGGGTATT 30309 28 100.0 32 GATGGGTATT ............................ GCCAAGGGTTTCCCTGAGGGGCTGGCAGATAT 30369 28 100.0 32 TGGCAGATAT ............................ GAGCCACCTTGTCGCATTTCGCCATGAACGAT 30429 28 100.0 32 CATGAACGAT ............................ AAAGATGATAACACAGCGATTTTAAACATAAC 30489 28 100.0 32 TAAACATAAC ............................ AACCACCAATTTCTCGCTCACCGTAAAGTATG 30549 28 100.0 32 GTAAAGTATG ............................ TAAAGACACAAAGCGAGCATCTGGCTTGATTT 30609 28 100.0 32 GGCTTGATTT ............................ TTTCACAGACATATTTTTTGGTTTGTCCATGC 30669 28 100.0 32 TTGTCCATGC ............................ CGGCATTAACAATCAGCGTATGGACTGGTCAG 30729 28 100.0 33 GACTGGTCAG ............................ TGCCCATCAAAACCTTTCTTGATGAACACAAAG 30790 28 100.0 32 GAACACAAAG ............................ AAAATCGGTACAGGATTGCCCTGAGCCACCGT 30850 28 100.0 32 GAGCCACCGT ............................ AAGTCAATACGGTGCGACCGCTGATAGCCTTG 30910 28 100.0 32 GATAGCCTTG ............................ TTTGGCGTGGTGAATTTGATTGGGTGAGCTAT 30970 28 100.0 GGTGAGCTAT ............................ AGTTAGTATA ========== ====== ====== ====== ========== ============================ 49 28 32 TTTCTAAGCGACCTGTGCGGTCGTGAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.40,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [53.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [94,133] Score: 0/0.18 # # Final direction: R [0,1.42 Confidence: HIGH] >NC_014125 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1175861 28 100.0 32 NNNNNNNNNN ............................ TATTAAATTACTAAATACAAGTCCTTTTGATC 1175921 28 100.0 32 NNNNNNNNNN ............................ ACCTTATGTTATATTAAATAGTGTAAAGATTT 1175981 28 100.0 32 NNNNNNNNNN ............................ TATCTATTTAGATATAGTCTTCTTTCTATATA 1176041 28 100.0 32 NNNNNNNNNN ............................ TTAGCTTTGTGTACAAAGTGTGCTAGTGATTA 1176101 28 100.0 32 NNNNNNNNNN ............................ TATAAGATGAAAAGTTATTGACAAAATGTACT 1176161 28 100.0 32 NNNNNNNNNN ............................ TGTATTTGCTGTTAGTTGCCAGCCACCTGCTC 1176221 28 100.0 32 NNNNNNNNNN ............................ TTTTGTTCCTAGCCCAGATCTAGGAATTATTA 1176281 28 100.0 32 NNNNNNNNNN ............................ TTGGGAAATGTCTAATACAGTCACTTTTTATG 1176341 28 100.0 32 NNNNNNNNNN ............................ CAGTAGACGGCACTAAATGCTATGGATATGCT 1176401 28 100.0 32 NNNNNNNNNN ............................ AGTTTGCCGCTTAAAGATGCAAATGAAATGCT 1176461 28 100.0 32 NNNNNNNNNN ............................ GTAACTTTCCGTTTACACCAGTTACTTCATAT 1176521 28 100.0 32 NNNNNNNNNN ............................ TTTGTAATTGTCTCCACCATGCTTTTTTATCC 1176581 28 100.0 32 NNNNNNNNNN ............................ AAAGACACTGCACCATCCCAAGGACAACCTCT 1176641 28 100.0 32 NNNNNNNNNN ............................ AAACAACCAGCATATCGTTCTCATCAGCAACT 1176701 28 100.0 32 NNNNNNNNNN ............................ AAGCGCAAGCGATCAAGGTCGTTGGTCTCAAA 1176761 28 100.0 32 NNNNNNNNNN ............................ AACAGCGGGTGCGACATCAAATTTAATAATAA 1176821 28 100.0 32 NNNNNNNNNN ............................ AACTACAGAAATCCGATTGGCTACAACATCAG 1176881 28 100.0 32 NNNNNNNNNN ............................ ACTATCTGGTAGAAGGATCGCATTTAACTAAG 1176941 28 100.0 32 NNNNNNNNNN ............................ CTTAGCGTATCTACCATTATAATACCTTTTCC 1177001 28 100.0 32 NNNNNNNNNN ............................ TGTTTTTAAATCTTTATACTGTAAATTTTGCA 1177061 28 100.0 32 NNNNNNNNNN ............................ AAGTTGTGTTTGCTGTAATGCAAATAACTTCA 1177121 28 100.0 32 NNNNNNNNNN ............................ ATTAGCACCACTTGCCCCCGCAGTCGATGTAG 1177181 28 100.0 32 NNNNNNNNNN ............................ TACAGATAACACTGAATATGAGGCTTACGGAT 1177241 28 100.0 32 NNNNNNNNNN ............................ TGACGTTAACAATGAAATTAAAGTCAAAAGTG 1177301 28 100.0 32 NNNNNNNNNN ............................ GTGCGACATAGGAGTAAAGTTAAAATCGCAAA 1177361 28 100.0 32 NNNNNNNNNN ............................ ACTAAGTTCTATATATCCAAGTCCTTTGCATT 1177421 28 100.0 32 NNNNNNNNNN ............................ AAAGATTGCACGTAAATTTAAATTGTTTTCTA 1177481 28 100.0 32 NNNNNNNNNN ............................ AAAACACCAGGATTATGAATGTGTCTTTTTAA 1177541 28 100.0 32 NNNNNNNNNN ............................ ATAATCTCTGCGAATTGCTTGAGCTAAATCTT 1177601 28 100.0 32 NNNNNNNNNN ............................ ATAATTCTCAGTTTCAGTAAGTATACCATATC 1177661 28 100.0 32 NNNNNNNNNN ............................ TGAAACACTTTCAAAAGTGGCTTCGTATTCTT 1177721 28 100.0 32 NNNNNNNNNN ............................ TGCTTTGAGTCATATTGGAGAGCAAGCTGTTC 1177781 28 100.0 32 NNNNNNNNNN ............................ AAATGCCTGCGCTATTTGAGCATTGCGCGCAG 1177841 28 100.0 32 NNNNNNNNNN ............................ GTCCAGAAGATAGATTGCTCGTACTCAGCATC 1177901 28 100.0 32 NNNNNNNNNN ............................ AAAACGCCATCAATTCAACACCATCACTAATG 1177961 28 100.0 32 NNNNNNNNNN ............................ AATGTTCTTTTGAAAAAATTAATTAATAGTCA 1178021 28 100.0 32 NNNNNNNNNN ............................ TGTATACTGCATAATGGGGGTATTATTGCACA 1178081 28 100.0 32 NNNNNNNNNN ............................ TCAATCTGGGGTACTGACCGGCTCATATCATA 1178141 28 100.0 32 NNNNNNNNNN ............................ AGCGTGGGGTAAACAAATATTTGATAGCTTAA 1178201 28 100.0 32 NNNNNNNNNN ............................ TCTATATGCTCTCGCTTAATGTCTTTTAATGT 1178261 28 100.0 32 NNNNNNNNNN ............................ TTTGAACGATCAAAGGCTCAATCTTGTTTCCC 1178321 28 100.0 32 NNNNNNNNNN ............................ ATTCGTCCTTGGTAACGTAGAGTTAATCTATA 1178381 28 100.0 35 NNNNNNNNNN ............................ CCAATTAATCACCCTACTAGTACAAATTTTATACT 1178444 28 100.0 32 NNNNNNNNNN ............................ TTCTTAGCCCCTAACACTTGCATTTAAAATAT 1178504 28 100.0 32 NNNNNNNNNN ............................ TAAAGTGATGATAGGTTCCCAACCATTGCGAG 1178564 28 100.0 32 NNNNNNNNNN ............................ TTTTGGGGTAATTAGTGTGTGTTTGCAAATGC 1178624 28 100.0 32 NNNNNNNNNN ............................ TAAACGCTGGATCTCTATCCTGTGTTTGATGT 1178684 28 100.0 32 NNNNNNNNNN ............................ ATTCGAGGACAATAAATCCCAGTTTAACCCTT 1178744 28 100.0 32 NNNNNNNNNN ............................ AAATACAATTGGTATGGTGTTTTGTAGCTAGA 1178804 28 100.0 32 NNNNNNNNNN ............................ AGCAGATATCTCATCCCATTCATTATCTGATT 1178864 28 100.0 33 NNNNNNNNNN ............................ CAGTACCCGCTACCAAACAAAGTGCCAAACCAT 1178925 28 100.0 32 NNNNNNNNNN ............................ ATTTGGAGAAATGGATATCCCCATTTGGTGAC 1178985 28 100.0 32 NNNNNNNNNN ............................ AAAACGAATCATTAATGGAATTGCGCATGAAA 1179045 28 100.0 32 NNNNNNNNNN ............................ AAACCTAAAATAAGTATATACTGAATTTGAAT 1179105 28 100.0 32 NNNNNNNNNN ............................ AGTGATTTAGATAATTCTCAGCTTCCTGTTTT 1179165 28 100.0 32 NNNNNNNNNN ............................ TGTACTTATTTCATTTCCTGTAATATGTAATA 1179225 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 57 28 32 GTTAACTGCCGCACAGGCAGCTTAGAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [262,270] Score: 0/0.18 # # Final direction: F [1.01,0 Confidence: HIGH] >NC_014148 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1849844 36 100.0 36 NNNNNNNNNN T.C...GC............................ GCCATGGATCAGAGCTTCAGCCAAGAATGTTCAATC 1849916 36 100.0 37 NNNNNNNNNN .................................... TTCCCGATCCGCAACCCGCCAGCGCCAAGAGGAAGAG 1849989 36 100.0 35 NNNNNNNNNN .................................... ACGACCGTAGCAATCGCAACGCATGACAATGCAAA 1850060 36 100.0 36 NNNNNNNNNN .................................... TCGATCAATGCGGCGTAAACGACATCTCCTTGCCGC 1850132 36 100.0 38 NNNNNNNNNN .................................... GTTGTCGATCTCATACACTTCCACCAGCGAGAATGGCG 1850206 36 100.0 39 NNNNNNNNNN .................................... CGCGCGATCCGGCAGAGGAATCCATGTTTTTCAGAGAGT 1850281 36 100.0 35 NNNNNNNNNN .................................... TGCCCTGTCGGGCCGAATATCCAGCCGAATGGGGT 1850352 36 100.0 38 NNNNNNNNNN .................................... CGGAGGTTTGATGCTGCGGCAATCCATTTTAGTTCAGT 1850426 36 100.0 38 NNNNNNNNNN .................................... ACCGCTTTGATCGAAGCGCCTGTGGCTGTCACATCTGC 1850500 36 100.0 37 NNNNNNNNNN .................................... TTTGCAAACTATCTGTCATGTGTGAAGACCAGATTTT 1850573 36 100.0 37 NNNNNNNNNN .................................... CTGTCGTTCTGCAGAAACTGATGAGGCATGCCGACAT 1850646 36 100.0 35 NNNNNNNNNN .................................... GTCATGCTTCCACAGCTTACGGATGCCCTGCTGAC 1850717 36 100.0 36 NNNNNNNNNN .................................... GTTGCTGCGGTTCCGGTTGCGGTGCGGGCAGCCACC 1850789 36 100.0 37 NNNNNNNNNN .................................... GCAGTTCTCAACGTGATTGCAGCATCTGTCCAATTAC 1850862 36 100.0 37 NNNNNNNNNN .................................... CCTATTTGCTGGCTATGCTTCAAGCTGTAGAAACTAT 1850935 36 100.0 37 NNNNNNNNNN .................................... ACTCTCGGTCGACGCCGCTTAGGTCAGGAGTCACCAG 1851008 36 100.0 36 NNNNNNNNNN .................................... CCGGCCCGACAATCGCACCGCTGGCGTCGATTGTTA 1851080 36 100.0 37 NNNNNNNNNN .................................... ATCAACAGCCAAAAATCATCATCTCTAGTCTTTACGA 1851153 36 100.0 35 NNNNNNNNNN .................................... ACGATCACGAATTCACCATCTACATCAGCAATCTC 1851224 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 20 36 36 GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-13.60,-12.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [58,380] Score: 0.18/0.18 # # Final direction: R [0.64,0.96 Confidence: LOW] >NC_014150 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1428031 30 100.0 37 NNNNNNNNNN .............................. ACAAAATGCAGGTGTTACTGGCACTAGAGAAACACTA 1428098 30 100.0 37 NNNNNNNNNN .............................. AGTATCTACAGTTTTACATTCACAATGCATATTTTCT 1428165 30 100.0 37 NNNNNNNNNN .............................. ATGCAAAACAATCTAATATTATATCATTCTCATTTGA 1428232 30 100.0 37 NNNNNNNNNN .............................. ATTTTTTGACTTAAATTGTACCAATTTAAATTAACTT 1428299 30 100.0 37 NNNNNNNNNN .............................. ATTTTTGGAGTTTGACAGCTATAACAAAAAAGTGATT 1428366 30 100.0 37 NNNNNNNNNN .............................. ATTATGAAAAGCGGGCTCAGTCAAATATAAACAATTT 1428433 30 100.0 38 NNNNNNNNNN .............................. ATTTATACTTACTAATTCCCAAGTTTCTTTTTTTATAT 1428501 30 100.0 37 NNNNNNNNNN .............................. ATTAACATTCTTAAAATATCTTTCAAGTTTCTTTACT 1428568 30 100.0 37 NNNNNNNNNN .............................. ATAAGCTAGCTATAAAACAACCGAGTTCTAATTCACT 1428635 30 100.0 38 NNNNNNNNNN .............................. ACTCTATTAATTAAAGCATTATTTAATAATTTATTTTT 1428703 30 100.0 37 NNNNNNNNNN .............................. ATCCTCTGAAGTAGAATATATTACATCATATTTAATT 1428770 30 100.0 38 NNNNNNNNNN .............................. AGTTGTTTTTGTTGTAATTCTAATGCTTTTTGCTGTTT 1428838 30 100.0 37 NNNNNNNNNN .............................. AATGTATAATACTGTCAAAGTTAATATTATACAGCGT 1428905 30 100.0 38 NNNNNNNNNN .............................. AGCATTTTTGCGGGCTTTTCTATTGACAAATAATTTAT 1428973 30 100.0 37 NNNNNNNNNN .............................. ATTTGACAATATATAAAAACTTTCATGTCGTCTAGGT 1429040 30 100.0 37 NNNNNNNNNN .............................. AAGCTATCATTGATGCACAAAATGAATTGAATGAGTA 1429107 30 100.0 37 NNNNNNNNNN .............................. AGTTTTGTATAAAAATAGAGAACTTGATACAGTCGGT 1429174 30 100.0 37 NNNNNNNNNN .............................. AAAAAACATTTAATGAGTTTATAGACTTTATAGAACA 1429241 30 100.0 37 NNNNNNNNNN .............................. ATATGCAAAACCCGATATCTTAATTATAAATATTAGT 1429308 30 100.0 37 NNNNNNNNNN .............................. AGACAGTCTCAATTAATTTAGTCATCTTAGTAATACT 1429375 30 100.0 38 NNNNNNNNNN .............................. ATAAGTATGATCCATAAGACCGGGATCGGAAATAGTAG 1429443 30 100.0 37 NNNNNNNNNN .............................. ACAAATGGTAAAGTAGTAAATCAAGTAACTAGCTTAA 1429510 30 100.0 37 NNNNNNNNNN .............................. ATACAAAAAATATCGTAAATATAATGTTAGTATAGGT 1429577 30 100.0 37 NNNNNNNNNN .............................. ATAGCATAAAAAGATATTACACGCCTCAAGAGTTAGC 1429644 30 100.0 37 NNNNNNNNNN .............................. ACGAAATTACTTTCAACTCCAACGTCTTGATACTCAA 1429711 30 100.0 36 NNNNNNNNNN .............................. ACACTTTGAAAATAAAAAACTTGTAATATTAGATAG 1429777 30 100.0 37 NNNNNNNNNN .............................. AGAAAATCTGTTCGGCGGTGTTTGGGAAGTACAATAT 1429844 30 100.0 36 NNNNNNNNNN .............................. ATTCTTTTTTACTGCGACCTAACCAGTCATAAAACG 1429910 30 100.0 38 NNNNNNNNNN .............................. AGCATACAACTTATTTTTACTAAAAATATTTATTCTTA 1429978 30 100.0 38 NNNNNNNNNN .............................. AACAAGCAACTGCAAACTGGTATAACACTAATCAACAT 1430046 30 100.0 37 NNNNNNNNNN .............................. TGTAATATCCATAACCTCATCACCTACTATCTCACTT 1430113 30 100.0 37 NNNNNNNNNN .............................. TTTAAAAGACATATAAGCATTATATTTATATTTTAAA 1430180 30 100.0 36 NNNNNNNNNN .............................. TTATCATAAAAGGCAAATATGTAAGTACAACTGCAA 1430246 30 100.0 38 NNNNNNNNNN .............................. TCTGTTTGATGATACATCAGGAACACCGCCACCATAAG 1430314 30 100.0 37 NNNNNNNNNN .............................. TTTAAAAGACATATAAGCATTATATTTATATTTTAAA 1430381 30 100.0 37 NNNNNNNNNN .............................. TGTAATATCCATAACCTCATCACCTACTATCTCACTT 1430448 30 100.0 37 NNNNNNNNNN .............................. TTTAAAAGACATATAAGCATTATATTTATATTTTAAA 1430515 30 100.0 38 NNNNNNNNNN .............................. TGAGTTTTTTTATACTGGGAATGATGTTGATAGTTTTA 1430583 30 100.0 36 NNNNNNNNNN .............................. TTATCATAAAAGGCAAATATGTAAGTACAACTGCAA 1430649 30 100.0 38 NNNNNNNNNN .............................. TCTGTTTGATGATACATCAGGAACACCGCCACCATAAG 1430717 30 100.0 37 NNNNNNNNNN .............................. TATATAGTTCCTATCATTCTTTATAGCTCCAAGAAGT 1430784 30 100.0 37 NNNNNNNNNN .............................. TATTTCCCATTTCGATAATATTTTATTAAACTTATTT 1430851 30 100.0 36 NNNNNNNNNN .............................. TAGCTATCATTGATGCACAAAATGAATTGAATGAGT 1430917 30 100.0 38 NNNNNNNNNN .............................. TAATAAACAAACAACATCATTATTAATTATGCCAACTT 1430985 30 100.0 37 NNNNNNNNNN .............................. TCAAGAGGAACATATCCTATAGTGTTGTTATTTTTTA 1431052 30 100.0 38 NNNNNNNNNN .............................. TTTATTTGAGTATGAGACTGTAATAACTGATAGTAATA 1431120 30 100.0 38 NNNNNNNNNN .............................. TGCGTTTGCTACAGGTACGGCTGGTTATACTTTAGAAG 1431188 30 100.0 1 NNNNNNNNNN .........................A...T NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 48 30 37 ATTTCTAATCTAACCATACTGGAATGTAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:73.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.00,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [76.7-86.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [158,392] Score: 0.18/0.18 # # Final direction: F [0.78,0.45 Confidence: LOW] >NC_014150 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 1430448 31 100.0 36 TATCTCACTT ............................... TTAAAAGACATATAAGCATTATATTTATATTTTAAA 1430515 31 100.0 37 ATATTTTAAA ............................... GAGTTTTTTTATACTGGGAATGATGTTGATAGTTTTA 1430583 31 100.0 35 GATAGTTTTA ............................... TATCATAAAAGGCAAATATGTAAGTACAACTGCAA 1430649 31 100.0 37 ACAACTGCAA ............................... CTGTTTGATGATACATCAGGAACACCGCCACCATAAG 1430717 31 100.0 36 CCACCATAAG ............................... ATATAGTTCCTATCATTCTTTATAGCTCCAAGAAGT 1430784 31 100.0 36 TCCAAGAAGT ............................... ATTTCCCATTTCGATAATATTTTATTAAACTTATTT 1430851 31 100.0 35 AAACTTATTT ............................... AGCTATCATTGATGCACAAAATGAATTGAATGAGT 1430917 31 100.0 37 TTGAATGAGT ............................... AATAAACAAACAACATCATTATTAATTATGCCAACTT 1430985 31 100.0 36 ATGCCAACTT ............................... CAAGAGGAACATATCCTATAGTGTTGTTATTTTTTA 1431052 31 100.0 37 TTATTTTTTA ............................... TTATTTGAGTATGAGACTGTAATAACTGATAGTAATA 1431120 31 100.0 37 GATAGTAATA ............................... GCGTTTGCTACAGGTACGGCTGGTTATACTTTAGAAG 1431188 31 93.5 ACTTTAGAAG .........................A...T. TTATATTT ========== ====== ====== ====== ========== =============================== 12 31 36 ATTTCTAATCTAACCATACTGGAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:74.19%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.00,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [66.7-86.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2575,391] Score: 0.18/0.18 # # Final direction: F [0.96,0.27 Confidence: MEDIUM] >NC_014152 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1946816 32 100.0 34 TATCGGGTTA ................................ TGGCCCGCGGTACGCCGCTGGGTGGACGAGCATG 1946882 32 100.0 36 GACGAGCATG ................................ CGGCGTACGAAAACCCATCTCCGGCAAGTGAAGTGA 1946950 32 100.0 34 AGTGAAGTGA ................................ CCTACTCTATTTTAGTTTAATGCAGCCTTTAATA 1947016 32 100.0 34 GCCTTTAATA ................................ TTGCAGTGAAGCTTGGTTAGACCGTTATGTATCA 1947082 32 100.0 37 TTATGTATCA ................................ GACTGACGATAAAGGAAATAAGAAGAAGGACATAGAT 1947151 32 100.0 36 GGACATAGAT ................................ ATAAGGGCGAATGCGGAGAAATTATAATTCCCTGCG 1947219 32 100.0 37 ATTCCCTGCG ................................ GGAATACGCCAGGCAAAACAGCGATGTCATTCTTATA 1947288 32 100.0 36 CATTCTTATA ................................ GAGGACAGAATCAAAGTCGCTCTGTTAAGTTATAAG 1947356 32 100.0 35 AAGTTATAAG ................................ GAGTTGTCATAAGCAAAGGATGTAATCAGCTTCCG 1947423 32 100.0 36 TCAGCTTCCG ................................ TATGACAATATAACAGATGAACTACGAGCCATATAT 1947491 32 100.0 36 AGCCATATAT ................................ ATAAATACCGTCCATAGTGTAGCCGTGCTCATACCG 1947559 32 100.0 34 GCTCATACCG ................................ AAAGTATATGGAACATGATGAGATGATTATGCCA 1947625 32 100.0 36 GATTATGCCA ................................ ACGAAAAAACCTGCGAAGTCGCGTGGCAGTAAGCGG 1947693 32 100.0 35 CAGTAAGCGG ................................ GAGACCTAGAAAACATGATCCTGCAGAAATAGCAC 1947760 32 100.0 35 GAAATAGCAC ................................ AGAATTAGCAATGCAGTACACCAAGGACACGTTGG 1947827 32 100.0 35 GACACGTTGG ................................ ATTGTCGGCACGACAACAGGTTCGCCTTCATATTG 1947894 32 100.0 38 CTTCATATTG ................................ ATGAGTATCAGGGAGACAACGACTAAAAGGAGGTATCG 1947964 32 100.0 35 GGAGGTATCG ................................ GGCTATAGTGGCACACTTCCGGCTAACTACTGCGA 1948031 32 100.0 35 ACTACTGCGA ................................ CAGCGGACTGGACGGCAGCCAACAAGGATTATATT 1948098 32 100.0 36 GGATTATATT ................................ TGTTCAACACTGATATGGTTCGGGCAATACTGGACG 1948166 32 100.0 37 ATACTGGACG ................................ GTGAGTTGGATTATAACGTCTATAATCTTATGCTTGA 1948235 32 100.0 34 TTATGCTTGA ................................ GGATACGATTTCTGGATTTACCAATCCCATCAAA 1948301 32 100.0 36 TCCCATCAAA ................................ TTGGGGGTGTAACTTATGCCTGAAAAAGTATATCTT 1948369 32 100.0 35 AGTATATCTT ................................ ATTTTCCACTCTTACAAATATGAACCAGATGGAGG 1948436 32 100.0 34 CAGATGGAGG ................................ AGCAGAAAATCTGCTTAATTTGTATGACAAAACA 1948502 32 100.0 37 TGACAAAACA ................................ AAAGATATAAACTGTTATGTTATATCCTTTGAGCAGG 1948571 32 100.0 37 TTTGAGCAGG ................................ GCCTGTTACTTCTGATTATAACCTCCCGTTATAATCA 1948640 32 100.0 38 GTTATAATCA ................................ TAGAGCCCAGATACTGGCTGATTTCGAGGCCGGGAAAT 1948710 32 100.0 36 GCCGGGAAAT ................................ CTCCGAAAATTTCGGAAATATAGAAGTATTGGTTCG 1948778 32 100.0 37 TATTGGTTCG ................................ ATATGGACTGATTAAGTTAGACAAAAAATATGCTTGA 1948847 32 100.0 35 ATATGCTTGA ................................ CATATCAACGGTGACCCACGAGACAATAGGCGAGA 1948914 32 100.0 35 ATAGGCGAGA ................................ TCTGCCGGGTCCCGTCGGCGGTTATCCGGGAAGTA 1948981 32 100.0 34 CCGGGAAGTA ................................ GGTTCGATGGCTTTTCTTTTCGGTTGCGATGACA 1949047 32 100.0 36 TGCGATGACA ................................ CCGATAGCTTTCCAGTCCTTCTATAAACATCTTCAT 1949115 32 100.0 35 ACATCTTCAT ................................ CAAAGCAGCTGGGCAGGTGCAAAATTGGTCATAAT 1949182 32 100.0 36 TGGTCATAAT ................................ GACCTCCGATGATGGTCATGGCAGCTGAAATGGCCT 1949250 32 100.0 GAAATGGCCT ................................ CAGGCATACTGTCTAAAACAGTATTGCTAATGTTAT ========== ====== ====== ====== ========== ================================ 37 32 35 GTTTCAATCCACGCACCCGCATGGGGTGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [6,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.60,-8.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [680,280] Score: 0.18/0.18 # # Final direction: R [0.45,4.87 Confidence: HIGH] >NC_014152 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1952690 32 100.0 34 TTTTCTTTGA ................................ GTGGATCAGGTGTCTGGAGTGCGGGAGGGAAATG 1952756 32 100.0 36 GAGGGAAATG ................................ CCCCGTGATTTTTCCCATTTTTGGCTGTTTTATTAG 1952824 32 100.0 35 GTTTTATTAG ................................ TGCAGATATGCGTTGATGAGCAGGCCGGCTATACA 1952891 32 100.0 37 CGGCTATACA ................................ ACGAATAGACATAATTGAAGCGGCACCAGTGCTAGAT 1952960 32 100.0 36 AGTGCTAGAT ................................ TTTTCGGGCCAAAAAATGCTATAGAATGATAGTGTA 1953028 32 100.0 34 TGATAGTGTA ................................ TAACATAAACGGTCTAACTTTTGCTGAATTACCA 1953094 32 100.0 35 TGAATTACCA ................................ CCGGTCACAGTCAATGGCGCTGACTATGATACCAT 1953161 32 100.0 36 ATGATACCAT ................................ CGCGACCAGTCTTCCGGAGGATTATGTCCGGATTGG 1953229 32 100.0 37 TCCGGATTGG ................................ GGGCCAGCGACCTCCGCAGTTTCTACGCTTGTCTCCT 1953298 32 100.0 35 CTTGTCTCCT ................................ GGATATAACGAACCAATCGCCCCGACCTATCACGT 1953365 32 100.0 35 CCTATCACGT ................................ TTAGCAAAGGCTATTGCAAATTCATATGGTTCGAA 1953432 32 100.0 35 ATGGTTCGAA ................................ GGGCGCTTATCTCGAAATACGGCATTATGAGCGTT 1953499 32 100.0 37 TATGAGCGTT ................................ TTGAATACGTACATTATTAAAAAAACAACAATACCAG 1953568 32 100.0 36 ACAATACCAG ................................ GGGGTTGTAAGAGGAATACCGAATAATCATGTAACA 1953636 32 100.0 36 TCATGTAACA ................................ TGCCATTACAGTCTGGTATATTTACAGGTATATTTT 1953704 32 100.0 36 GGTATATTTT ................................ ATAAAAGTAAAAACAAAGAAGTTGTATTCTGTTGGT 1953772 32 100.0 36 TTCTGTTGGT ................................ GCCGGCATTTTACAGTGTACACAAAGACATAAAAGA 1953840 32 100.0 33 ACATAAAAGA ................................ GCAACTTACGTACATTCCCACCGGTCAGAAGAT 1953905 32 100.0 34 GTCAGAAGAT ................................ GCGACCTGCTTGTTTATTATCTTTGCCCTGCTCT 1953971 32 100.0 35 GCCCTGCTCT ................................ CTACTCTCGAAGCCAAACTGAACGCTGTTGAGCAG 1954038 32 100.0 34 TGTTGAGCAG ................................ CTGGTCAGTATACAATAGTAGACGGGAGTTTACA 1954104 32 100.0 35 GGAGTTTACA ................................ GGAGAACGTATCTGTTTATTCCCGCGACAGTGTAC 1954171 32 100.0 35 GACAGTGTAC ................................ GTTAAATCGTCGTTCATATACACATTTTCTGCATG 1954238 32 100.0 35 TTTCTGCATG ................................ TAGTACTGCTCACAAACAGACGACTGCAGCAGATG 1954305 32 100.0 36 GCAGCAGATG ................................ TTACCTTCTCCTTTAGGTTTTAATAGGTTTCAAAAT 1954373 32 100.0 36 GTTTCAAAAT ................................ CTTTCATAAGTGACCATCTCCTTAGGTTTTTTAGAA 1954441 32 100.0 37 TTTTTTAGAA ................................ ATTACGAATATTTTTAATCTGACTACTTGTCAACCAA 1954510 32 100.0 35 TGTCAACCAA ................................ AACATAATCCCTCCTTAATTTTAAAAGTTTCATAA 1954577 32 100.0 35 AGTTTCATAA ................................ TTGTGTTCGCTAGTGACGTTCAAAAAGTCACCAAT 1954644 32 100.0 34 AGTCACCAAT ................................ TGAATTCTGTCTTCGACTTGGGCATGATTAGCAG 1954710 32 100.0 34 TGATTAGCAG ................................ CGTTGAAGGATAAAACCAATTTTAAAGGAGGAAG 1954776 32 100.0 36 AAGGAGGAAG ................................ TGTATATTCGTAATATCCTTTTGCAAAAAGTTCTTT 1954844 32 100.0 36 AAAGTTCTTT ................................ AATCCAGCACCAAAAAATTCAATAATATCATCAGTT 1954912 32 100.0 37 ATCATCAGTT ................................ TTTAACATGGGTATTAAATTTAATTGATATACTTGAA 1954981 32 100.0 34 TATACTTGAA ................................ GTTGCCTGCTGCCCGGATGTTTCAGCGCATACAG 1955047 32 100.0 36 GCGCATACAG ................................ GGTAATCATGCGTAAAGTCAAAATCACAGAGACCCT 1955115 32 100.0 34 CAGAGACCCT ................................ AAATTCAGTATGTTTCTTCATCTCGCCACACATG 1955181 32 100.0 36 GCCACACATG ................................ CCCCGTGATTTTTCCCATTTTTGGCTGTTTTATTAG 1955249 32 100.0 36 GTTTTATTAG ................................ GACATGGACACCTGCCGGGGAGAACAGTGGGAAAAA 1955317 32 100.0 35 GTGGGAAAAA ................................ GAGCGGGAAGGGGTGAGGAATGAATGGTAGCAGAA 1955384 32 100.0 37 GGTAGCAGAA ................................ AGTATCTATAAAATCACTAGTCAAACTATCAAAAACA 1955453 32 100.0 36 ATCAAAAACA ................................ GCAGATGGGTCAATTACTCTTGCAAAGCTTAATCCG 1955521 32 100.0 37 GCTTAATCCG ................................ TTTTTTTGTAGTTTTTTTCTAGTAGAAAAATTTTTCC 1955590 32 100.0 34 AAATTTTTCC ................................ GCTTAGCTTCGCTTGCGAACCCTTTTTTGGCCTC 1955656 32 100.0 34 TTTTGGCCTC ................................ ATTTGGGGGGTGGTTAGTTGTTTGTTCAGCTTAA 1955722 32 100.0 37 TTCAGCTTAA ................................ AGCCTGGGCAAAGGTAAAAATTTGAGCCACTATTTAA 1955791 32 100.0 35 CACTATTTAA ................................ ATTGCTGTGATTTTTGCAAGTATCACAAATGACAG 1955858 32 100.0 37 CAAATGACAG ................................ GTTTAGTTTGGTTATGTTGCAAGGCTAAGGTTTTACG 1955927 32 100.0 35 AGGTTTTACG ................................ CATTACCTGCCGGAACAGTCCGGCAGGTTGTGCAG 1955994 32 100.0 34 GGTTGTGCAG ................................ AATTCGGATACTGTGACACGGACGCTGATGTCTC 1956060 32 100.0 36 CTGATGTCTC ................................ TGTTCCTAGGGCAGGAGGGATAACAGGGCAGGCATA 1956128 32 100.0 35 GGCAGGCATA ................................ AAACAAAAGCATCTGATGTGGCGAAGAAAATAGTA 1956195 32 100.0 37 GAAAATAGTA ................................ TGTCACGCCACCGGCCCGGCTGCCGGTTCTTCAACCA 1956264 32 100.0 37 TCTTCAACCA ................................ TAGTAGCAAAAGATGATGTGCAAGCTGCGGCATTTAA 1956333 32 100.0 34 CGGCATTTAA ................................ CCTGCGAGAGACGAAACCAGAAGCATATGAGCAT 1956399 32 100.0 36 ATATGAGCAT ................................ AGGACAATCTGTATTGCCACAAATGATGATTTTGTT 1956467 32 100.0 35 TGATTTTGTT ................................ AAAAGAAAAAGTAAATTATACCATCGAATTAGCTG 1956534 32 100.0 35 GAATTAGCTG ................................ ATTTTTTACCTTTTATGTTCCATGCAGCCAAAATG 1956601 32 100.0 37 AGCCAAAATG ................................ ACGGATTGTGCCGGTCAAAAAAGGCCCGGATTCGGTG 1956670 32 100.0 37 GGATTCGGTG ................................ TTCTCACCCCGAGGACAAAATATTTCAGCACGAAGGC 1956739 32 100.0 36 GCACGAAGGC ................................ AGCCAAACTATGCACTTCGTCCCGCCATTCGCTGTA 1956807 32 100.0 33 ATTCGCTGTA ................................ GTTTGCGCCTGTTTCAAAAACTTCTTCCATCAT 1956872 32 100.0 35 CTTCCATCAT ................................ CTATGTCAAAGTCTGCTACTAACACAAGGTTATCG 1956939 32 100.0 33 AAGGTTATCG ................................ GTTTGCGCCTGTTTCAAAAACTTCTTCCATCAT 1957004 32 100.0 34 CTTCCATCAT ................................ TCTTCCATTCATAGACCGTGTCCGTATTCACATC 1957070 32 100.0 34 TATTCACATC ................................ GTATGGCATGAATACCTTCGCCCGTTTGTGGATG 1957136 32 100.0 35 TTTGTGGATG ................................ TATGAGATACCGGAAGCGCTTGGCATGATAATTAA 1957203 32 100.0 34 TGATAATTAA ................................ GCAGACGTTGCTTTTGTTGACGACGAATTCAAGC 1957269 32 100.0 34 GAATTCAAGC ................................ GACCCAATGCGAAGGCATGAGGTTAGCAGTAGGG 1957335 32 100.0 38 AGCAGTAGGG ................................ GGCGCGACTTGCTTGTTTATTATCTTTGCCCTGCTCTG 1957405 32 100.0 37 CCCTGCTCTG ................................ GACTTTTCCGTCACCGCCGAAGCGCTGCAGGAAGTAG 1957474 32 100.0 35 CAGGAAGTAG ................................ GGAATTGGTGGATTTCAGTTTACTGCATCACGATT 1957541 32 100.0 33 CATCACGATT ................................ AACGGTCTATTTTGCCTTGTATTCGACGATAAC 1957606 32 100.0 35 CGACGATAAC ................................ AATTGTAAAAATTGACAATGAATGGAAGGTAAAAG 1957673 32 100.0 34 AAGGTAAAAG ................................ TAAACTGATAATAGCGTTGTTTACAGTAGCATTA 1957739 32 100.0 34 AGTAGCATTA ................................ TATTCGCATTATCTACTACTGTAATATTGACTTC 1957805 32 100.0 34 TATTGACTTC ................................ AGACCAAGAAGCGCCTTTTGCTTGGGGGGGATGT 1957871 32 100.0 34 GGGGGGATGT ................................ TTAATCCATGGTAAATGGTTTGGTTGACTAATAT 1957937 32 100.0 35 TGACTAATAT ................................ AACCCTTATTTTGGCGTAAATCCGTTAGACGTTTA 1958004 32 100.0 35 TAGACGTTTA ................................ ATCACAGTTATTGACCCATATCCTGAATGGTCAGG 1958071 32 100.0 35 AATGGTCAGG ................................ ATGGGCCTGCATCAATATGGTAAGCGTACAAATAA 1958138 32 100.0 34 GTACAAATAA ................................ CTTTTTTATTGATAATCGTTATTAAGTTGTCAAA 1958204 32 100.0 35 AGTTGTCAAA ................................ GCGTTTGCGGGGGTCCTGCCGGGTGTAGTGCCCCG 1958271 32 100.0 35 TAGTGCCCCG ................................ AACAAGCTTTTAACACAGCTTACCGGACCAACCTT 1958338 32 100.0 37 GACCAACCTT ................................ GTCTAACCAGGATATGACCACCGGTTTTTATTTCCGT 1958407 32 100.0 37 TTATTTCCGT ................................ GACCAACCCCGCCGGCTAAATCGGAAGCCATCTTGGT 1958476 32 100.0 38 CCATCTTGGT ................................ AGGGGGACCCGGATTTAAGTGGCATCATATCAAAGCTT 1958546 32 100.0 36 ATCAAAGCTT ................................ ATGGAAGGTGGTTTGGAAGATGAGATTGCTTAATTT 1958614 32 100.0 36 TGCTTAATTT ................................ TAACAATTTTCTTTTCACCGTCAATTGTACAAGCTG 1958682 32 100.0 36 GTACAAGCTG ................................ GGTAAATGCTTATTATGATACAAGTACAGGACAATG 1958750 32 100.0 35 CAGGACAATG ................................ TTAATGTCACTTTTGCTTTTTGAGCCTCAAGTCTA 1958817 32 100.0 34 CTCAAGTCTA ................................ ACCCGGAGAGATTGGATGAGCCGTTGAAGTGGAA 1958883 32 100.0 36 TGAAGTGGAA ................................ GGACGGCCAAGCTATCCGGACGGAGTTACTGAGGAA 1958951 32 100.0 35 TACTGAGGAA ................................ TTTATCGTTTTGGCGGTTGCTCTTTTTATCTTCCG 1959018 32 100.0 36 TTATCTTCCG ................................ TCTTCCTCCGTGGTTAAAAGAAACAGTGGGAAAGAA 1959086 32 100.0 36 TGGGAAAGAA ................................ TGGCTCCACCGACAGATTTCATATATGCCTTTAGCT 1959154 32 100.0 36 GCCTTTAGCT ................................ TGCTCTGGATAGTTATTTTCTTAACACAAATAACAT 1959222 32 100.0 CAAATAACAT ................................ AGCACCTAAA ========== ====== ====== ====== ========== ================================ 98 32 35 GTTTCAATCCACGCACCCGCATGGGGTGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [6,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.60,-8.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [208,180] Score: 0/0.18 # # Final direction: R [0,4.87 Confidence: HIGH] >NC_014152 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2078345 36 97.2 37 GCAACCCAAA -................................... GCAAACCCGCCGGAACAGGCCGCCGGGGGATGGGACC 2078418 36 100.0 38 GGATGGGACC .................................... TAAATTCCGAATGGATACTATTTCTTGTCCAGATGCTG 2078492 36 100.0 38 CCAGATGCTG .................................... TTTGAAGCCGATGTAGCCTACTACGAAATTTACGCTTC 2078566 36 100.0 35 TTTACGCTTC .................................... AATCAAAAATAATCCCCCGCCTCCCGGCGGGTAGA 2078637 36 100.0 33 GGCGGGTAGA .................................... GCAGGGCCGGGACTAAAATTGGCTATAGTACTC 2078706 36 100.0 34 TATAGTACTC .................................... GATATTATACGAATTATTGTAATTCGTTCTGGTC 2078776 36 100.0 35 CGTTCTGGTC .................................... TATGACATAGCTACGTATAATGCCAGAAGAATAAC 2078847 36 100.0 36 GAAGAATAAC .................................... AAATAATGGACGACACGGGACTATATTCGCCTAAAG 2078919 36 100.0 37 TCGCCTAAAG .................................... TGGCTTTGCAACTTCAGCTGGTGAAGTTGTGGTCATA 2078992 36 100.0 39 TGTGGTCATA .................................... TTATATGACCCCTTATGACTATTCATGTTCTGGTAGTAT 2079067 36 100.0 39 CTGGTAGTAT .................................... GTAGTAGCACATAGAAAAGCAATGTCAGCTAGCTTTTCT 2079142 36 100.0 41 TAGCTTTTCT .................................... TGCTACATGTTCACAGTCCATTGTCCCCGCTGCGCCAGTGA 2079219 36 100.0 38 GCGCCAGTGA .................................... ATTGATAATAATGGTACTTTAGAAGAATTATATCAAAA 2079293 36 100.0 37 TATATCAAAA .................................... TTATCATCAATCCATTTCAAAAAATATTCTACCGTAC 2079366 36 100.0 39 TCTACCGTAC .................................... TTATATGACCCCTTATGACTATTCATGTTCTGGTAGTAT 2079441 36 100.0 39 CTGGTAGTAT .................................... GTAGTAGCACATAGAAAAGCAATGTCAGCTAGCTTTTCT 2079516 36 100.0 41 TAGCTTTTCT .................................... TGCTACATGTTCACAGTCCATTGTCCCCGCTGCGCCAGTGA 2079593 36 100.0 38 GCGCCAGTGA .................................... ATTGATAATAATGGTACTTTAGAAGAATTATATCAAAA 2079667 36 100.0 37 TATATCAAAA .................................... TTATCATCAATCCATTTCAAAAAATATTCTACCGTAC 2079740 36 100.0 39 TCTACCGTAC .................................... AGTACAGAGCCATTTCTTGGTTCTGCCATCAAGCAATTC 2079815 36 100.0 38 CAAGCAATTC .................................... GAATTAACACTTGTTTCTTCGGACAGTTCGACGAGGTG 2079889 36 100.0 43 CGACGAGGTG .................................... TGCTCCGGGGTCACGGAGGGAGATTATTACTTTCCCCCTCCGC 2079968 36 100.0 41 CCCCCTCCGC .................................... AAGCCATTTTAGCACGTTCTTACAGAATCGAAAAAGCACAA 2080045 36 100.0 37 AAAAGCACAA .................................... AAAAATGCAAATCAAGACAAATTGTGTTTGGACAAAA 2080118 36 100.0 40 TTGGACAAAA .................................... GCTGTTATTTCCTGCGCTACGTGTGCACCCATAGCGTAGG 2080194 36 100.0 36 ATAGCGTAGG .................................... ATGAATTAAGGATGGAATAGTTAATTCCTGCACAGT 2080266 36 100.0 CCTGCACAGT .................................... CCTAGCTGCG ========== ====== ====== ====== ========== ==================================== 27 36 37 GTTTCCGTCCCCTTACGGGGATAAGGAAGATTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-9.60,-9.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [591,174] Score: 0.18/0.18 # # Final direction: F [0.82,0.41 Confidence: MEDIUM] >NC_014152 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2550336 30 100.0 39 ACAGTCATCT .............................. TGAGAAAATGCCGTGCGATGCAGTGGCGACACTCACCGC 2550405 30 96.7 36 CACTCACCGC ............C................. GGAACGTGATGGCCCTATGTGCCAACACCCGGGATG 2550471 30 100.0 38 ACCCGGGATG .............................. GGAATGGCCGCCGATATTGTGATACCCGGGGTTAGTCC 2550539 30 96.7 38 GGGTTAGTCC ............C................. GAAAAGATAGCCGCCGCGGTGGGAAGAAAAAAATATGG 2550607 30 96.7 37 AAAAATATGG ...................-.......... AAGGCCCTACTGCAACCTTTACCGCTGTCAGGTATGA 2550674 30 96.7 36 TCAGGTATGA ................A............. CCTCCATATGTTCCTAATGATGTACCACAATCAGGA 2550740 30 100.0 37 ACAATCAGGA .............................. CCGGATTAGTAGAGCGGAGAGACTTAACTGTTTTAGC 2550807 30 100.0 35 CTGTTTTAGC .............................. AGTAGTTAGCGGCCCCTTAAGCTGCTGCCTCCATT 2550872 30 96.7 37 TGCCTCCATT .......................C...... ACACTTGCCGCACTGTTGTTCACATATACTTTTCCTA 2550939 30 100.0 37 ACTTTTCCTA .............................. CGGTGGCGGTTTCGTTAATATGATTATGCACTTCCTG 2551006 30 100.0 36 GCACTTCCTG .............................. GCTTCACCACCTTCAAAAGCATTGCCAATTACTTTG 2551072 30 100.0 37 AATTACTTTG .............................. CCGACCTGGAAGGCCAGCCGGTGACGGAAGAACTGAT 2551139 30 100.0 38 AAGAACTGAT .............................. GATGAAACCGCCTACACCCGGATGAAGCTGGACTTCTA 2551207 30 100.0 38 TGGACTTCTA .............................. GTTCAGCTTCGCCTGTTCGCGTTCAGCACGAACTTGTT 2551275 30 100.0 36 CGAACTTGTT .............................. CATTTTTTTCTAAATAGTCATTTTTTTGAAATTCGT 2551341 30 100.0 37 TGAAATTCGT .............................. TTGTCAATGCCTTTATTTATATTCATTTTGATTTGTT 2551408 30 100.0 40 TTGATTTGTT .............................. GCGACGTGAACCTGCCGGAATCGGACGTAGATCCGGGCAG 2551478 30 100.0 37 ATCCGGGCAG .............................. CAATCCCAATGATATAGGGGAAATTAGGCATATGTTT 2551545 30 100.0 38 GCATATGTTT .............................. CGGTTTGCCGAACAACAAGGCCTTTACCTACCAAATGA 2551613 30 100.0 35 TACCAAATGA .............................. CAACTACAAAACAATGGACCTCACGCTTGAAACAA 2551678 30 100.0 37 CTTGAAACAA .............................. GAAGAAGTATGGTCTGGATCATCTCCAGTGGGTATCA 2551745 30 100.0 38 GTGGGTATCA .............................. ATGAACTTAGAAGAGTGGGAAGAACTACGAAAAGGAAG 2551813 30 100.0 35 GAAAAGGAAG .............................. TGTATCGTTGGGTAGCTGGCATTATTGCCCAACCC 2551878 30 100.0 39 TGCCCAACCC .............................. TGGACTTCGGCTATGCTGTTGACCCATTGGCTTACGTTG 2551947 30 100.0 39 GCTTACGTTG .............................. GTGGAGAAAAAAGCCAGTTGTGGTTGAGGCAGAAGTGTA 2552016 30 100.0 36 CAGAAGTGTA .............................. CCGGGAAAAAGAATCTGAATTTCACTACCGGCCTTT 2552082 30 100.0 37 ACCGGCCTTT .............................. GGTAGTCAGGGTTAGAGGTTAACCACTGGTATCCGAG 2552149 30 100.0 40 GGTATCCGAG .............................. CTATCAATCAATCGGAAATACCCATCGTTGTAATCAACAA 2552219 30 100.0 36 TAATCAACAA .............................. TGTACATAGCCCAGCCATTACACTCGCGAATTTTTT 2552285 30 100.0 38 CGAATTTTTT .............................. TCATGGGCTGTTTTTTTATTTTCAGAGAAAAAATAGGC 2552353 30 100.0 35 AAAAATAGGC .............................. GTTTTAGGATTGTTGAAGGAACTGGTTAAAGAAGA 2552418 30 100.0 36 TTAAAGAAGA .............................. GTAGAGCCTTCGGGCTCTTTTCTTTTGGGGTTGATA 2552484 30 100.0 40 GGGGTTGATA .............................. ATTCAGCTACACCTGCTCAACGGGAACAGGCGGCATCTGA 2552554 30 100.0 36 CGGCATCTGA .............................. TGCGCATCCCGGTATATGAGGCAACATATATCTCAG 2552620 30 100.0 36 TATATCTCAG .............................. CATCGAAACGGCATTTGAACTGAAAACGCCGTAAAA 2552686 30 100.0 36 CGCCGTAAAA .............................. GGTCCTCACGAACAGTGATGGCGCTGGCGTAAACCG 2552752 30 100.0 35 GCGTAAACCG .............................. CCTGGTAAAGAAGATGCTTAATGTGGCTGAAGGTG 2552817 30 100.0 36 GCTGAAGGTG .............................. GAAATAAAGCTGTTTCAATATCTTTAACCGAACAAT 2552883 30 100.0 38 ACCGAACAAT .............................. GAGAGTTTGCACATCTATAGTATCGTCGTCATGGACTT 2552951 30 100.0 36 TCATGGACTT .............................. CAAAAAAATAGACGACTTTCACGCTGTAATAACGGT 2553017 30 100.0 39 TAATAACGGT .............................. CAAGTCAGCGCAGAAAATCTACAACCATCTCGAAAAAAT 2553086 30 100.0 40 TCGAAAAAAT .............................. GGATGGAGAATCCCGGTGGCAGAAATTAGGGGGCTAATAA 2553156 30 100.0 39 GGGCTAATAA .............................. CGTACAACCGGCACCTGATTGGGCCGATGGTTTTCCCTA 2553225 30 100.0 35 GTTTTCCCTA .............................. GCTGTCCTGCTGCGAAGCGGTCCTTTTGGTTATTT 2553290 30 100.0 38 TTGGTTATTT .............................. CCTACCAACTTTTTTAACCACCCGAATAACCTGTCCCA 2553358 30 100.0 35 ACCTGTCCCA .............................. CGGGGTTATGACCTGGTAAACGTCCCCGGCTTCTA 2553423 30 100.0 39 CCGGCTTCTA .............................. GCGGGACGGTTTCACCTCCCCGCACCAGGAGGTAACTAT 2553492 30 100.0 40 AGGTAACTAT .............................. GAAAATAATTATATTCTTGACGTAGAACATATTGATGCAT 2553562 30 100.0 37 ATTGATGCAT .............................. TCGCTAAACCCGTCAAACATGAGTCCTTGATATGGAG 2553629 30 100.0 38 TGATATGGAG .............................. TTGGCTGTTCCTGGATAAATAATAAATTGGTTATCCCT 2553697 30 100.0 38 GGTTATCCCT .............................. ACATTTGACCAGTTGCCGGAAGAATTACAAGACGCTAT 2553765 30 100.0 35 AAGACGCTAT .............................. AAAAATTATTTTAGGGGAGGTGATAAGATGAAGTC 2553830 30 100.0 38 AGATGAAGTC .............................. AAAGATAAGGCTGATAGGTATGATTTGAAGAATTTTTA 2553898 30 100.0 35 AGAATTTTTA .............................. GGAGAGTATGTTTTTACTAGAATGCCTGAGGATTT 2553963 30 100.0 37 CTGAGGATTT .............................. CAAAAGAAGGTATTTGCAAATTAAATTTTAAGTTAGT 2554030 30 100.0 38 TTAAGTTAGT .............................. AGGAGCTTCAGGCATTGCCCATCCGCATAGATGAGGTG 2554098 30 100.0 37 AGATGAGGTG .............................. TGCTGAGGGATTATTGGGTACCGCTATGGGACAGCAT 2554165 30 100.0 36 GGGACAGCAT .............................. TGATTTTTGTCCTTACTGCGGATATGGGGGTGAAGA 2554231 30 100.0 38 GGGGTGAAGA .............................. TCTTTGGTTGCCTCATTCATCACACACTCCAAAAGCGG 2554299 30 100.0 CCAAAAGCGG .............................. CCGTTCCGGT ========== ====== ====== ====== ========== ============================== 60 30 37 GTTTCAATCCCTTATAGGTAGGCTAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.40,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [176,1929] Score: 0.18/0.18 # # Final direction: R [0.27,5.46 Confidence: HIGH] >NC_014152 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2567569 30 100.0 36 GCAAAAGGCA .............................. TAAACGTTTTGTGGCAAAGCTTGATGTTATAGATAT 2567635 30 100.0 37 TTATAGATAT .............................. AACAACTCCTTCAACTTAGCTGCATCTGTTTTTTCTA 2567702 30 100.0 39 GTTTTTTCTA .............................. TCAATGATAAGCTTCCCTTGGGCCATGGCGAAAAATCAC 2567771 30 96.7 37 GAAAAATCAC T............................. AATTTTATACAGATAGGACAGTTGCCAACCGGGAAGT 2567838 30 100.0 36 ACCGGGAAGT .............................. TGTACTTGCGCCACATGAGAGACTTTACCGTATTTA 2567904 30 100.0 35 ACCGTATTTA .............................. TATTCTGGTTTTAACTGTTTTTTCGGTTCCCCGGT 2567969 30 100.0 38 GTTCCCCGGT .............................. TGGAAATTTTTTTCCGAAAAAAGAAGGATTTTTCCGTT 2568037 30 100.0 37 TTTTTCCGTT .............................. TTTTCCAGGACAAAAGCCAAAACAACCTTTTTACCTA 2568104 30 100.0 36 TTTTTACCTA .............................. AAAAGGCCACGTAGAGCAAAGGTTTACCCAATGGTC 2568170 30 96.7 35 CCCAATGGTC ............C................. GGAAACCAAAAACCCTGGCGCCCTGCACCGCTGGA 2568235 30 96.7 38 CACCGCTGGA ............C................. TTCTTCTAAGTCGATGTTTCTTGCTCCAGCCAGGTCTG 2568303 30 96.7 40 GCCAGGTCTG ............C................. TCGCAGCAGTATGCGCCGAACGGCAGCCTGGTACTGCGTG 2568373 30 100.0 36 GTACTGCGTG .............................. TTGCCAAGGCGAAGGAGTTTGATGCGCTGCCTGGCG 2568439 30 100.0 37 CTGCCTGGCG .............................. CAGTGCTCTATCCATACTTTCACGCCATTTGACGCCG 2568506 30 100.0 35 TTTGACGCCG .............................. AGGCCGGAAAACGGTTATTTGGTTGTCCCTGCTTC 2568571 30 100.0 36 TCCCTGCTTC .............................. GATTTTTGTTCGGCAAGGCAAGTATGCAGGATGTAC 2568637 30 96.7 34 CAGGATGTAC ............C................. TGATGCTCATTGTGGGTATTGTGCAGAAGTAGTT 2568701 30 96.7 35 AGAAGTAGTT ............C................. TTGAATTATACAAGGTCTTAACATGCACCACAGAA 2568766 30 100.0 39 CACCACAGAA .............................. CATTATGGGCCTCCTGGGAGTCTTTTTTTCTTGCTTCAT 2568835 30 100.0 36 CTTGCTTCAT .............................. GACCGATTATTTGCGTAGTTTATATGATTCTTTTGC 2568901 30 100.0 40 ATTCTTTTGC .............................. TTGTGCCGCAGGTTTGGAACAACTGATTTCTTAGAACCAT 2568971 30 100.0 37 TTAGAACCAT .............................. GTGTTTTCATACTGTTTAATTACCTGCCATCCATTTT 2569038 30 100.0 34 CATCCATTTT .............................. TGAATGGGCACAAATGCGAAGAGAGGGAATTGTG 2569102 30 100.0 36 GGGAATTGTG .............................. CAGCCTGGCTTAGGTCAGGCTTATTTTTTTTATCCT 2569168 30 100.0 38 TTTTTATCCT .............................. GTCATGGCCGTTACCCGGGGGATTGTTGATGTGTACGG 2569236 30 100.0 35 ATGTGTACGG .............................. GGCACGGCAACCCATACCGTGCTGTACGCCTTCCA 2569301 30 100.0 35 ACGCCTTCCA .............................. GGTTGTTGATGTTAGGGTGGAACGGCTGCAGGATA 2569366 30 100.0 36 CTGCAGGATA .............................. ACAGAAATACCCTTTCGATATGGGCGAACCTTGGAA 2569432 30 100.0 37 AACCTTGGAA .............................. AAAGATAACATACCACTACCATTTTCATTATACAAAG 2569499 30 100.0 35 TTATACAAAG .............................. GTAATCGGGCTCTCTTTTACCTGTTTTCCACTGAC 2569564 30 100.0 37 TTCCACTGAC .............................. GAAATAGGCTGGACATTCACGCTTTACGTGGACTTTT 2569631 30 100.0 36 GTGGACTTTT .............................. AGAGCTTTAGCTGAGGTAAAAGCAGAAATGGATTTT 2569697 30 100.0 37 AATGGATTTT .............................. GGCAGGGATTTTTTTGCATATCCATTTGCCGCTATGA 2569764 30 100.0 38 GCCGCTATGA .............................. TCTTGCGTTATATTGTTTCTCTGTTTCGCTTGTATATC 2569832 30 100.0 36 CTTGTATATC .............................. TATATTGGACCGCGCGAAACACTGACAAACATAACT 2569898 30 100.0 39 AAACATAACT .............................. TTTCATTCTCCTATGGCGGAGAAGCCCAGGTTATGGGCG 2569967 30 100.0 38 GTTATGGGCG .............................. CTACGAACGCAACAATTTCCGTCTTTTCAGAAAATCTA 2570035 30 100.0 38 AGAAAATCTA .............................. ATAGACGATGCGGTTAAGGACCCTGCTAATGATAAAGC 2570103 30 100.0 36 ATGATAAAGC .............................. TAAACCAACAGAAATAAAAACCGAAAAAGTACAGTA 2570169 30 100.0 38 AAGTACAGTA .............................. TTTTCCTCCTTGTGTTATCTTTTGATTATATGTTATCA 2570237 30 100.0 36 TATGTTATCA .............................. TCCTCATAATAATGTAGTTATCCACAGAAGAATAAA 2570303 30 100.0 36 GAAGAATAAA .............................. TCCGGCTGGGAAGCCTTACAAGCCCCGATAATTCCT 2570369 30 100.0 36 GATAATTCCT .............................. AAACAGGGGGAAATTGACCCTGTTGTATCTGTTGAT 2570435 30 100.0 38 ATCTGTTGAT .............................. CTTTTGAATATTCCTCTTTTTATTTCCTTTTTACGACG 2570503 30 100.0 35 TTTTACGACG .............................. CAATTACATCTAAAAACTCATATTGACCAGTAGAA 2570568 30 100.0 37 ACCAGTAGAA .............................. GGTTACCTATTCGGATTATCGTAACCGAAACACCTAT 2570635 30 100.0 37 AAACACCTAT .............................. TGGGGAGCGCAAGCCGAGAATTGCGCTAACTACTTGG 2570702 30 100.0 36 AACTACTTGG .............................. GAGCTTTAGCCGAAGTAAGAGCAGAAATGGATTTTT 2570768 30 100.0 37 ATGGATTTTT .............................. CATGATTACCACTCCTTACCTTCTCCATTTTAGGTTT 2570835 30 100.0 36 TTTTAGGTTT .............................. TATAAAATAGTAGAATACGTTTTTGAACCAGCCAAA 2570901 30 100.0 39 ACCAGCCAAA .............................. CATATTCGTCATATGATACCTCATTTTTTGATAGTCCTG 2570970 30 100.0 36 GATAGTCCTG .............................. GAGAAAATTCGCAGCATTATGGAACGGCATTAACTA 2571036 30 100.0 38 GCATTAACTA .............................. GGAACAGTTGCTTAACGAATTCCAAAAAAATGACTATT 2571104 30 100.0 35 AATGACTATT .............................. TCCGATTGGGTATATAAAAATTATCCGAAGTGTTA 2571169 30 100.0 37 CGAAGTGTTA .............................. CGAACCGAACCGTCACAGATTATGCCGTCTTTATCCT 2571236 30 100.0 TCTTTATCCT .............................. CCCGTTCCGG ========== ====== ====== ====== ========== ============================== 56 30 36 GTTTCAATCCCTTATAGGTAGGCTAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.40,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [38,403] Score: 0.18/0.18 # # Final direction: R [0.27,5.46 Confidence: HIGH] >NC_014152 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 2572406 31 100.0 37 GCGTGTCAAT ............................... AGATTGGCTCGTTGCTTAATATGCTCTTCCACTTCAT 2572474 31 100.0 35 TCCACTTCAT ............................... CATCAAGAGTTGGACAACAGATCATAGGCTGCGTC 2572540 31 96.8 AGGCTGCGTC ..............................G ATAGCCTATCATGTAGCGCACAGCCAGGCACCGAAA ========== ====== ====== ====== ========== =============================== 3 31 36 GTTTCAATCCCTTATAGGTAGGCTAAAAACC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.29%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.40,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [56,272] Score: 0.18/0.18 # # Final direction: R [0.68,5.05 Confidence: HIGH] >NC_014152 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2575991 30 100.0 38 TGCCGGAGGA .............................. TTTGGGCAGCGCGGTCAAGGCTTGCACACCAAACGAGG 2576059 30 100.0 38 CCAAACGAGG .............................. GCGGAAATACAGGGCATGAGACAAGTACCCGGCGAAGA 2576127 30 100.0 35 CCGGCGAAGA .............................. TCTACTACCGACACATCTATGTTTTCGACGTCAAA 2576192 30 100.0 36 CGACGTCAAA .............................. CGCAGTACATTGAGGAAATTTCAGAAGAGCAAACAT 2576258 30 100.0 40 GAGCAAACAT .............................. TAAAACATATCTAATTTAAACTTCCGTATTTGAGCAATTT 2576328 30 100.0 37 TGAGCAATTT .............................. GCTAACAGGGAGGTTATGGAATCCATGAACACACGAT 2576395 30 100.0 39 AACACACGAT .............................. TGTCGTAACCATGTCCCGGCGCAGCGGCCTGCTGGAGTT 2576464 30 100.0 38 TGCTGGAGTT .............................. AATAAATTACGATGATATTTATAGGTTGTCTTCTGCTC 2576532 30 100.0 35 TCTTCTGCTC .............................. ACGGGTCATTCTTCTTTACCCCCTCAATGATTTGA 2576597 30 100.0 39 AATGATTTGA .............................. TGTGGGGAATGAATCAATGCGACCCGAACAAGCCTTTGA 2576666 30 100.0 37 AAGCCTTTGA .............................. ACGGCAAATATCCGTTCGTGAAATTCACCCCGAAAAA 2576733 30 100.0 36 CCCCGAAAAA .............................. TATGCCGCCGTATGTACGAGAGCTTATAGAGATGTT 2576799 30 100.0 39 TAGAGATGTT .............................. TTTTTGATTCGCTGGTAATAGCGCAAAAATCCAAGGAGG 2576868 30 100.0 38 TCCAAGGAGG .............................. GTATATTACCGTGGTACAGACTTCGTGGATCTGGATTA 2576936 30 100.0 37 ATCTGGATTA .............................. CCCCTCCCTAAATATTTATAAGGAGTGATCATATGAC 2577003 30 100.0 39 ATCATATGAC .............................. GGGGTAGTGGTGGGGATACTAATTTAGGATGTCATGCAA 2577072 30 100.0 37 TGTCATGCAA .............................. AACGAGGAGCACTTGAAATCGAAATAGATGAAATCAA 2577139 30 100.0 37 ATGAAATCAA .............................. CCAGCCAATAGCCGACAAACAAAAAAACGAGCGCAAC 2577206 30 100.0 37 CGAGCGCAAC .............................. GTCGAAGGTATCAAAGTATTGTGTGCTGACGGAATGT 2577273 30 100.0 38 GACGGAATGT .............................. GGCAGCCCGGCAATGGGGACACTGTACCGGTCGTCATA 2577341 30 100.0 38 GGTCGTCATA .............................. GTCGTCAATTATAATCGCTTCCAAGCTTTGTAGAAACT 2577409 30 100.0 38 TGTAGAAACT .............................. ATGGACATTACCAAGGACTGGGAGCTGTACGAGGCAGG 2577477 30 100.0 39 ACGAGGCAGG .............................. GCAGTTGACGGTCCCCTTATATTTCCACCAGTATTCGAG 2577546 30 100.0 37 AGTATTCGAG .............................. TATTCAACCACGATTGAAGAGGTCAATTACAGATGCA 2577613 30 100.0 38 TACAGATGCA .............................. CGCGTATATAACAACATTGGTCCCTCCACCGTACCACT 2577681 30 100.0 36 CCGTACCACT .............................. CAGAACAATCCTCTCCCCTCTCAAGGCCCTCTCGGC 2577747 30 100.0 41 CCCTCTCGGC .............................. AGTTTCAAGTTGGATGAATACGTTCAAGTCAACGACCGGAC 2577818 30 100.0 39 ACGACCGGAC .............................. TATGAAGGGTATGCATATTGTACCGTTTGATGGGACTGA 2577887 30 100.0 35 ATGGGACTGA .............................. TATTACCGTGGTACAGACTTCGTGGATCTGGATTA 2577952 30 100.0 37 ATCTGGATTA .............................. CAGACGGTTTCCTGCTGCAACTCAAACTGCTGTGCGT 2578019 30 100.0 36 TGCTGTGCGT .............................. GCATGCGATAGTTCTTGTACCGGCCCGATTTCACGG 2578085 30 100.0 38 GATTTCACGG .............................. ATGTTTTTTCTACAGTTGACATAGTATCAATCCTTTCT 2578153 30 100.0 38 AATCCTTTCT .............................. CTTTTTTAGTGTCAAAAAGTCAAATAAGGCGCAGGAGA 2578221 30 100.0 38 GCGCAGGAGA .............................. CCATTCTCCCCTGCACGTGCCTACGCAGTCCCACTGTC 2578289 30 100.0 35 TCCCACTGTC .............................. TCTGACACGTCTTCTACCCTGTGTTCGTCATACAC 2578354 30 100.0 38 CGTCATACAC .............................. GTATTGGTCACTGGAACCAGCGTCCAATATGCGAACGG 2578422 30 100.0 37 ATGCGAACGG .............................. TGTCTTTTCTTCGTCTTTGTAAACCCTGACAATGCAG 2578489 30 100.0 41 GACAATGCAG .............................. GGGCATAGTGTTGTCTAATCGATACATACGTTCAAATTTGA 2578560 30 100.0 39 TCAAATTTGA .............................. ATTTTCTGTTCTACATCAATGCCAAATAAACTTTTCCTA 2578629 30 100.0 37 ACTTTTCCTA .............................. GCACTAGTCCGCGAAGAACTAAAAACCAAAGCCTCAA 2578696 30 100.0 39 AAAGCCTCAA .............................. CGGCCTCACCTTCCTCGGGCTGCGTCAGTTTCGGAACTT 2578765 30 100.0 36 TTCGGAACTT .............................. AACTCAATGTCTCTGGATGTTCTTGAGACCGTAAAG 2578831 30 100.0 37 GACCGTAAAG .............................. TGGTACAATTGCTGCAGGTCAGCCTATTCTAGCACAA 2578898 30 100.0 38 TCTAGCACAA .............................. TGCCGAAGAGGGCCGATTGGCTCATGATATTGCGGAGC 2578966 30 100.0 34 ATTGCGGAGC .............................. CCGTCAAAACAGCAGGCAAAAAAATCCAGTACGG 2579030 30 100.0 36 TCCAGTACGG .............................. CCGGCGGGACCGCTGAGGCTTGCCTTTATCTTTGAG 2579096 30 100.0 37 TATCTTTGAG .............................. AATACTGTAAGTAACCAGGCCACTTATCATCTCTCAT 2579163 30 100.0 35 CATCTCTCAT .............................. GTGAAGCCTTATGATGAATAGGTGTTTGAGTTGTG 2579228 30 100.0 39 TTGAGTTGTG .............................. CAGTTTACTGACTACGAAAAAGCGTTTAGTGTATTAGTG 2579297 30 100.0 39 TGTATTAGTG .............................. GAGCAGCTTCCATCTGCTCAATTTCGCGCCTGACTTCAG 2579366 30 100.0 40 CTGACTTCAG .............................. TAACAATAAAAAGACTATCCATCTTACTACTGCAAAACGG 2579436 30 100.0 36 TGCAAAACGG .............................. GGACATAGCGCATTTCGGCCACGTCGCGAAGGAATT 2579502 30 100.0 39 CGAAGGAATT .............................. CAGAATGCGGCAGTGCCGAATTTGGACAGGAGAGGTTTT 2579571 30 100.0 38 GAGAGGTTTT .............................. GGTCATATTTTGGTCTGTTCGCCTGGTTATCCCGGCTT 2579639 30 100.0 38 ATCCCGGCTT .............................. CCGGTAGTACCTGTATTTTGCTTTCTTATATAGCCGGT 2579707 30 100.0 36 TATAGCCGGT .............................. AGTCCTTTGTTGCCAGTATCCGTTGCCTCCAGAGTA 2579773 30 100.0 39 CTCCAGAGTA .............................. GTCAGGTTCGCTGCGGCAATAGCCATCACCACGGAATAG 2579842 30 100.0 38 CACGGAATAG .............................. AATGCAGGGGCCACTGGGTTATGACTGCCTCATCCAAA 2579910 30 100.0 37 CTCATCCAAA .............................. AGCACCTGAGACACGCCCATAAGAGCGCCGCCGCCGG 2579977 30 100.0 39 CCGCCGCCGG .............................. ACTTCGCCGATTGGCCACCATCCTTGCTTGGCTTTCGGA 2580046 30 100.0 36 GGCTTTCGGA .............................. TGCGTTTTTGCTGTTTTTCTGGTATTATAGAACTGA 2580112 30 100.0 35 ATAGAACTGA .............................. GCAAAAGCGGAAGTTATCGAGGCCACCCGGGAAAT 2580177 30 100.0 38 CCCGGGAAAT .............................. AGGGTACCTGCGCATCACAGGTAAGAACCAAAATATGG 2580245 30 100.0 36 CAAAATATGG .............................. CGTACTCCAACGGCGTGGTTAAGACCGACGATGTGG 2580311 30 100.0 36 GACGATGTGG .............................. ACCGGCCCACAGCAGGCAGGCGGTATCCGCATTGTA 2580377 30 100.0 37 CCGCATTGTA .............................. GTTCTGAAGGTGGTTTTTTAGTGCCTGCTGACTTTGA 2580444 30 100.0 36 CTGACTTTGA .............................. TCGGTTCGATGAAACATTTCCTCAGTTTCAGTTCGG 2580510 30 100.0 38 TTCAGTTCGG .............................. GATTTTGGCCTTTTCTTCATCGTCAGCATCCAATAATA 2580578 30 100.0 36 TCCAATAATA .............................. AGAGGCTATAGACCGGCACGGTGTAGCCGAAAAAAT 2580644 30 100.0 39 CCGAAAAAAT .............................. ATAGCAAGTTTGGTGGTGTAATTATGCTTTCGAGCCGGT 2580713 30 100.0 36 TCGAGCCGGT .............................. GAGGAGGTTCCCTATGAAAAACAAGCTCACTGACCT 2580779 30 100.0 36 TCACTGACCT .............................. ATTTTGGCTTGTATTGGCTTAATATGCTTGTATGAT 2580845 30 100.0 36 CTTGTATGAT .............................. GACTGCTTACGAATTTTATTATATACTACCTGAAAA 2580911 30 100.0 35 TACCTGAAAA .............................. GATTGAGTTGTAAGATTGTACATAATTTGATTAGG 2580976 30 100.0 38 TTTGATTAGG .............................. CAATTAACCATCGAACAGATAGATGGAGAGATTGTTGA 2581044 30 100.0 39 AGATTGTTGA .............................. TACCAACCGCTTTCGTCCCTGGTTTGCGGTCTCGTTCGT 2581113 30 100.0 38 TCTCGTTCGT .............................. AAGTAGAAGTGCCGCAAACTGTATACGAAATCCTTGAA 2581181 30 100.0 37 AATCCTTGAA .............................. GTTAATTGTGGTTTTGAATATCAAAATGAAATACCCC 2581248 30 100.0 38 GAAATACCCC .............................. GAAACTGGCTAGGTTGACGGACGAAGAATGGAAGAGGT 2581316 30 100.0 36 TGGAAGAGGT .............................. GATACTATGAAGCCGAGTACTGGGACAAAACACGCG 2581382 30 100.0 39 AAAACACGCG .............................. CTAATAAATGAAAAAGGCTATTGGTCAGAAGAGGTGAAA 2581451 30 100.0 37 AGAGGTGAAA .............................. GATACAAAATCCATGAGTAGTTTTATCGATGAAGTAT 2581518 30 100.0 35 GATGAAGTAT .............................. GTACTGTATTTATCCTCCTCCATTCGGCATCGGTG 2581583 30 100.0 38 GGCATCGGTG .............................. TTTCCAATCGTTCGAATTCCACTCATTTTGTATCTCAT 2581651 30 100.0 38 TGTATCTCAT .............................. TTTCTTAATCCGCTTTCTCATACCGTTCACACCTGCAA 2581719 30 100.0 37 ACACCTGCAA .............................. GACAGTTCGCGAATCATCTTGTCGCGGGTTTCTGCCT 2581786 30 100.0 39 GTTTCTGCCT .............................. GACGTTCAGGCTGTTTCCAGTAGGAGTTACGCCCTCGGT 2581855 30 100.0 35 CGCCCTCGGT .............................. AAATCCTGTTTTTCTTTTCACATGAAATGCCCCCT 2581920 30 100.0 39 AATGCCCCCT .............................. CTGCAGGTCCTCCGGCTTCATTTCCTCGCCGTTCTCCTT 2581989 30 100.0 37 CGTTCTCCTT .............................. TCCTTCACCCGGTACCCACGACCTCGGAGAATACGCT 2582056 30 100.0 38 AGAATACGCT .............................. CGAGATTAACTTAGAAGAGGCGATCATAAGTAAGATGC 2582124 30 100.0 39 AGTAAGATGC .............................. TTTAAGGACAAACTATTTTCCCCCCTTTTGTTTTTCCAA 2582193 30 100.0 40 GTTTTTCCAA .............................. CTGCGTTAAGCAATACCTTAATAGCAAACATACCGAACCG 2582263 30 100.0 TACCGAACCG .............................. CCGTTCGGGC ========== ====== ====== ====== ========== ============================== 94 30 37 GTTTCAATCCCTTATAGGTAGGCTAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.40,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [58.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [227,262] Score: 0/0.18 # # Final direction: R [0.27,4.87 Confidence: HIGH] >NC_014160 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 772206 24 100.0 42 NNNNNNNNNN ........................ CAGGGAATTCTTTAAAGCTTTAGAAGCGCAAAAAGTCGAGGA 772272 24 100.0 37 NNNNNNNNNN ........................ GTTGATGGCTTAACAACAATTGGTTTTGGCGGTGTGA 772333 24 100.0 45 NNNNNNNNNN ........................ ATATATGTAGTATCGGTAAGTGCTAGTGCTGTATCAGCAAATAAA 772402 24 100.0 42 NNNNNNNNNN ........................ CGTATTACTAATACGCCTTTTCTGCCCTCATCGGTTTCGGTT 772468 24 100.0 40 NNNNNNNNNN ........................ ACACTTAGTCGTGAAAAATCCAAGCCGAAAGAATACCCTG 772532 24 100.0 38 NNNNNNNNNN ........................ CGCTATACTCCATCACATACAAGTTGTCCTCGCCCCGG 772594 24 100.0 44 NNNNNNNNNN ........................ GTGTTAATAAAGCAACCCTACACCGCATACGCTATAATCGTGAA 772662 24 100.0 38 NNNNNNNNNN ........................ TATATTGCTCGCGCAATTCTTTAAGCTCTTTTCTCAAA 772724 24 100.0 39 NNNNNNNNNN ........................ ATCGCAGCAACGCTATCGAGCCTATGTGTTGATTCGTTG 772787 24 100.0 39 NNNNNNNNNN ........................ ACGTTTGAATCCGCGATGGAAACATCGGCTTTAGTAAGA 772850 24 100.0 39 NNNNNNNNNN ........................ ACCGCGAGGAGCGGGGCGAGAAATTATTGTTTCCTGTTG 772913 24 100.0 43 NNNNNNNNNN ........................ CGTGTAAGGTTGCTAACGCTTGATAAGCTAACACCGTTCACCG 772980 24 100.0 39 NNNNNNNNNN ........................ CTACGGGTTCGAGCTTAAAAAAGCCGTTTTCGAGAGCGA 773043 24 100.0 42 NNNNNNNNNN ........................ TTGAGGCTCTCAGCTAGCTGGGGTATCAGCGATTTGAACACT 773109 24 100.0 42 NNNNNNNNNN ........................ ATTTCTACATTTCATAATTGAGGTGTAATATATGTCCCAGAC 773175 24 100.0 40 NNNNNNNNNN ........................ CGAACAAATTAATCATTAGTAATGGCAAAATGATATACGA 773239 24 100.0 41 NNNNNNNNNN ........................ TATTGTTAAATGGTGTTTATTTGCTGATACAGCACTAGCAC 773304 24 100.0 43 NNNNNNNNNN ........................ TCGCAGGGTCAAATGTGGTTATAGCGGACATTTATATCACCCC 773371 24 100.0 42 NNNNNNNNNN ........................ TGTGCTTTACACGGCTGATGAACCGCCTCATTACCCAATTGA 773437 24 100.0 41 NNNNNNNNNN ........................ ATGGAGCTAGAGCTCATAAAGCTAATTATCCTATTTCTAAT 773502 24 100.0 41 NNNNNNNNNN ........................ TCATAGTTGAATATGACTCATACAGCGTTAATGCGTCGTCA 773567 24 100.0 40 NNNNNNNNNN ........................ TACCATAAGCTTTTTTCATTAGTGATTTACAATGACGGCG 773631 24 100.0 51 NNNNNNNNNN ........................ AAAATTGAAAGTATTTCACACTCCTCCAGGGGTGCATTTACACACCCCCTT 773706 24 100.0 40 NNNNNNNNNN ........................ AGACAAGACTTCACGATTGGAGTAATAAACGATGTAGTAT 773770 24 100.0 43 NNNNNNNNNN ........................ CTAGTCCCATATGTAAGGTCTAATATGCGTATTGGTGGCTTGA 773837 24 100.0 39 NNNNNNNNNN ........................ TATCCATATTGTTCCGAATGACCTATTCATTTGTGCATT 773900 24 100.0 41 NNNNNNNNNN ........................ TGGGACAGTGCCACTACGCATATGGCTGTGAGCCCAACTAT 773965 24 100.0 39 NNNNNNNNNN ........................ AATAAGGAAATGAAGGAAGCGTTTGCGAAAAAGCTAAGA 774028 24 100.0 42 NNNNNNNNNN ........................ GAGGATTGGATTCCTGGTAACTTGTGTGAGCCAATACTACGT 774094 24 100.0 43 NNNNNNNNNN ........................ CACAACTCAAACTCAAATTAGCTATTACGAATTCGCAAATAAG 774161 24 100.0 41 NNNNNNNNNN ........................ CACAAGCATATACAACTTGCTCGACACAATGGATAAGTATG 774226 24 100.0 41 NNNNNNNNNN ........................ CCGAACCCGTCGTGCTGGGTAGTGTAAAAGTTTACGAGCCT 774291 24 100.0 43 NNNNNNNNNN ........................ TGTATTATATCCAATATTCCGTATATTCTAGCACTCATTGCAT 774358 24 100.0 41 NNNNNNNNNN ........................ AAGATAAAAGTGAGCATTGTGAAAATAGGGAGTGGAAAAGC 774423 24 100.0 41 NNNNNNNNNN ........................ CTCATTACCGCGCAATTGTTCAAGCTTATTTGCGAATTCGT 774488 24 100.0 46 NNNNNNNNNN ........................ TCACGGCAAAGCCCTGGAAAACGTACGGCAGCATCGTGGCTACTGC 774558 24 100.0 40 NNNNNNNNNN ........................ TCGCCTTCGACTTCACATCCCTCATCAACATGATAACGCA 774622 24 100.0 41 NNNNNNNNNN ........................ TTAACCGTTTTTCTTCCCCTGTTCGCCACAGTTGGATTTTT 774687 24 100.0 44 NNNNNNNNNN ........................ CTAAAAACATTAAGCCCAATGGGGATTAAAGGTAAAAGCAGGCT 774755 24 100.0 41 NNNNNNNNNN ........................ TATATTCGCGTGAGTTTAAAGCGAAATGGCGAGATAGTTGT 774820 24 100.0 41 NNNNNNNNNN ........................ TGAGGATAGGGATTGTCTGGGAGTGCCCGTGGACTCCCAGT 774885 24 100.0 44 NNNNNNNNNN ........................ TTTGATACGGTAAACAAAATACAACATGATTAGTAAGATAAATA 774953 24 100.0 39 NNNNNNNNNN ........................ TTAATTTTACCGGTACGGGATAATTTTTCATCACAAAGG 775016 24 100.0 37 NNNNNNNNNN ........................ TTTTTAATCAATTGGGAAGCGTTAATAGCTCTTACCA 775077 24 100.0 42 NNNNNNNNNN ........................ AGACTTGAGACCCAGGGACATGAGACCCCACCGAGAAACATA 775143 24 100.0 38 NNNNNNNNNN ........................ TAATAAACGCTCACGGGTGAAACGCTTAGTGCATGTAG 775205 24 100.0 48 NNNNNNNNNN ........................ CTTGAAAACCGTCACCTGGCTGGTGTAGTCCTCGATGACAAACTTTCT 775277 24 100.0 43 NNNNNNNNNN ........................ CTACAACATTGTTTAGACTAATACCTTTATGCTCAGCTAATTG 775344 24 100.0 36 NNNNNNNNNN ........................ TTGTATCGATAGCTATTAACATGGGCTTGTCGCTTA 775404 24 100.0 42 NNNNNNNNNN ........................ AGCCCAGCCCCGAAGCTCAGCCTTTTTTTCAAGCCCTTTCCT 775470 24 100.0 39 NNNNNNNNNN ........................ TGTGCCCCTCCGTAGTGATTGCTACTTTCTGCTGTGTTA 775533 24 100.0 38 NNNNNNNNNN ........................ CAGCACATTGGATATGGTATAAACCTCTATTATAAGTG 775595 24 100.0 42 NNNNNNNNNN ........................ AGAGTGGATTGTGAACAAGGGGACTGTGAGCGAGGAGGAGAA 775661 24 100.0 40 NNNNNNNNNN ........................ TTCTTACATTCTTACGCGGAATTTTCCGCGTGTAAGAATG 775725 24 100.0 42 NNNNNNNNNN ........................ GTCTCGCGTGCTAGCAGGTTGAGTGCGGTCGGGGTTTTAGTC 775791 24 100.0 42 NNNNNNNNNN ........................ ATAACGTTGAGTTGCTGTTCAACGTGCCCAGGGATAAGCTCA 775857 24 100.0 40 NNNNNNNNNN ........................ GACGCCCTAGCCTTCGCGATCCCCTGCTTCGTCCTCTCGC 775921 24 100.0 27 NNNNNNNNNN ........................ AGAAATACAAGCGATATAAGATAAAAG 775972 24 100.0 37 NNNNNNNNNN ........................ AGTAGGAAGCCGTCGGGGCTTCTTGTTTTATCGTAAA 776033 24 100.0 39 NNNNNNNNNN ........................ AGGGCCACGCCAAGGACAGCTAAGAGCGGTATAAGCTTC 776096 24 100.0 38 NNNNNNNNNN ........................ CTTAAAAACGGTCCTCCAAACCCCCCGGTAACGCCCCA 776158 24 100.0 46 NNNNNNNNNN ........................ CTTAGTGCTTACTGAAACATATGACAACTATGTGAACAGTAAGAAT 776228 24 100.0 41 NNNNNNNNNN ........................ AGCCAGCACGAGTTAAGCGTCCACGTCTCGTTTGTTTTGTT 776293 24 100.0 40 NNNNNNNNNN ........................ CTAACGCCAATACCTCTTCAACCATAGCCCACTGTGGCAG 776357 24 100.0 39 NNNNNNNNNN ........................ TTTTTTAACAACGCTAAAACATCACTGTCAATCATAATG 776420 24 100.0 44 NNNNNNNNNN ........................ TTATGCTGGTTTTGAAGAAATTGGTTGAGTCAACCAGGTAAATT 776488 24 100.0 39 NNNNNNNNNN ........................ ACTTACTTATGTTAAAATCGTAGATATCTTGAAAACGCT 776551 24 100.0 42 NNNNNNNNNN ........................ AGACAGCGCTAGAGAATGGTCATGTTAAGAAGCTAGGGTTTA 776617 24 100.0 43 NNNNNNNNNN ........................ TCGAAATACCATGTGTAAAGATGGGGTGCTATAGTGTCGCCGG 776684 24 100.0 39 NNNNNNNNNN ........................ ATTTGATAACTTGTAATGTAGTCATTTACTCCTAGATAG 776747 24 100.0 40 NNNNNNNNNN ........................ AATATGGTTGTTTTCAAGCGCTATAGCAAGCTCGGGGGTT 776811 24 100.0 38 NNNNNNNNNN ........................ CGCGGAAACGCAGCAGTTTAAAATCCGAACCAATCGGT 776873 24 100.0 44 NNNNNNNNNN ........................ AATATGTAAAGGAGAAAATCCTGTATTATGAGAAAAACGGGAAT 776941 24 100.0 44 NNNNNNNNNN ........................ ATTCAGCGTGTCAATGCTAGTGTCCTTATAGAAGTTGAACACCT 777009 24 100.0 41 NNNNNNNNNN ........................ CAATCTATATGATGTGCCATTCCATATTATTAAATGGTGTT 777074 24 100.0 41 NNNNNNNNNN ........................ TTAATAAGGATATTAGAAAAACCCAAAAAGCGAAAAATATA 777139 24 100.0 37 NNNNNNNNNN ........................ GGGTTTACAGGCTCACGGGCCTCGGTGAATACTATGT 777200 24 100.0 41 NNNNNNNNNN ........................ TATGGAAACATATCCCGCATAGAAGATTCGAGAAAATGGCT 777265 24 100.0 39 NNNNNNNNNN ........................ AAGCAAAAACCAAACCCACAGGTTAACTCCCCAAACCAG 777328 24 100.0 40 NNNNNNNNNN ........................ CCAGTATTACATTCACGGAAGACTTCACGGTCTGCACTAA 777392 24 100.0 39 NNNNNNNNNN ........................ GTATAAAATGATATTTGAGAAATGCTATAGGGATAAAAC 777455 24 100.0 41 NNNNNNNNNN ........................ ACCATTGCCAAGCCAATCGTCATGTTCAACAAGCTCGACAG 777520 24 100.0 38 NNNNNNNNNN ........................ TGTGCAACGTTGAACGGGTTGACGTAGTCGCTTAGCAT 777582 24 100.0 40 NNNNNNNNNN ........................ CCTCCCACGGGGCCAGAGGACCCTCCTATTAAACTATGGT 777646 24 100.0 41 NNNNNNNNNN ........................ GTTGACAGGGCGGTTGTCAGGCTTGGCGATGCTAATATTGA 777711 24 100.0 40 NNNNNNNNNN ........................ GCGTTTATCGCTTAACCGCTCTAGGCGAATACTACGTTAA 777775 24 100.0 39 NNNNNNNNNN ........................ ATCGTTTCCCAGAGGGTCAATCCTACCTACCCATGCATT 777838 24 100.0 39 NNNNNNNNNN ................T.GA..GT TCATATCCGTATGCGTATTGTGGATTGAGCTTCCTAACC 777901 24 100.0 1 NNNNNNNNNN ..........G............. NNNNNNNNNN ========== ====== ====== ====== ========== ======================== 89 24 40 GAAACAATAGAGAAAAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [192,19] Score: 0.18/0.18 # # Final direction: F [5.36,0 Confidence: HIGH] >NC_014165 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================== ====== 1474940 21 100.0 38 CGCCGGAGCG ..................... AGAGGTGATGCGTTCCTCAGCGCACCTCGGCCGCATCT 1474999 21 100.0 32 GGCCGCATCT ..................... GAGAGACCGGGGCGTGAGCATCGTGGTGGCGC 1475052 21 90.5 GTGGTGGCGC CC................... CGGGGGGAGA ========== ====== ====== ====== ========== ===================== 3 21 35 GATCACCCTCCTCGCGCGGGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [15.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [198,458] Score: 0.18/0.18 # # Final direction: R [0.41,0.82 Confidence: MEDIUM] >NC_014165 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1733788 29 96.6 32 TGGCGTGGGT -............................ TGGAGACCGGCAAGAGCGGGGGAACCGTCGAG 1733849 29 100.0 32 AACCGTCGAG ............................. CTCGGCCCGGACCCGGCGAAGCTCGGCCTGCC 1733910 29 100.0 32 TCGGCCTGCC ............................. AGGTGCTGGGCGCGGGTCATGGCGATGGCCCC 1733971 29 100.0 32 CGATGGCCCC ............................. GACTGGGAGATGGACGATGCCGAGTTCGAGCG 1734032 29 100.0 32 AGTTCGAGCG ............................. TCGTGCGGTGGATGGTGCGGACGGACATGCCG 1734093 29 100.0 32 GGACATGCCG ............................. ACCGGCGAGCGCTCGAGCGCTCATGAGCGGTC 1734154 29 100.0 32 ATGAGCGGTC ............................. CACTTCACCCAATCCTGGTAGGCAGCCACCGG 1734215 29 100.0 32 CAGCCACCGG ............................. CCCCCGGCAGCCGGCCGGGTCGACGCCGAGAC 1734276 29 100.0 32 ACGCCGAGAC ............................. CTTTGCGCCCTCACTCCGCACAGCCGCGCCGA 1734337 29 100.0 32 GCCGCGCCGA ............................. TTCGATTCCCTCGACCAGGGCCAGCAGCTCCC 1734398 29 100.0 32 AGCAGCTCCC ............................. ACGTCCACCGGGGAGGTGGACATCCAAGGGCG 1734459 29 100.0 32 TCCAAGGGCG ............................. CCAGCTGCTGAACCGTCATATCCCTCCTCCCT 1734520 29 100.0 32 CCTCCTCCCT ............................. GACCGCTGCCACTCCTCCCACTTGTCCTGGAG 1734581 29 100.0 32 TGTCCTGGAG ............................. GCCCGGGCTCACGGCAGCAAACCCGCGCCGGC 1734642 29 100.0 32 CCGCGCCGGC ............................. CGCGCTCCAAGAAGCAGGAGGCCGTGTACCGG 1734703 29 100.0 32 CGTGTACCGG ............................. AGGAACAGGTCGCCCGGCTGGGTGCCCGTGGG 1734764 29 100.0 32 TGCCCGTGGG ............................. CCCGCTCTGAGCTGGGCAAAGACGGCGAGAAG 1734825 29 100.0 33 CGGCGAGAAG ............................. GTCGACGGCACCGAGGAGGCGGCGGGCCTCGTT 1734887 29 100.0 32 GGGCCTCGTT ............................. GTCGTATCGGGGGAGCCCATGAGGCGCTCCCC 1734948 29 100.0 32 GGCGCTCCCC ............................. ACGATCGTCCGCAAGGACGACCCCGAGTTCGA 1735009 29 100.0 32 CCGAGTTCGA ............................. CTCCCGGGGCTGACTTGCCATCGTGAGCCATC 1735070 29 100.0 32 GTGAGCCATC ............................. CCGCACTGCCGCAGCGAACACGTACCGACACT 1735131 29 100.0 33 TACCGACACT ............................. ATGACGGTGGCGCGTCTGCCCCGCCAGCTGAAG 1735193 29 100.0 35 CCAGCTGAAG ............................. AGCTTGGCCGCCTGCCTCGCGGCCTTCATCAGGTT 1735257 29 100.0 32 TCATCAGGTT ............................. CGGGAACCGCTGGAGTTCACCGACCTGTCGAT 1735318 29 100.0 32 ACCTGTCGAT ............................. GCCGGATGCCGGACAACGTCGTAGCAATCGAC 1735379 29 100.0 AGCAATCGAC ............................. GCTTCCCGAC ========== ====== ====== ====== ========== ============================= 27 29 32 GGGATCATCCCCGCGTGCGCGGGGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [4,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [33.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [3812,157] Score: 0.18/0.18 # # Final direction: R [0.55,0.68 Confidence: LOW] >NC_014165 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1730562 29 100.0 32 NNNNNNNNNN C...........C..C..A.......... TTCCTCGACGAAGCGCGTGATCTTATAGCCAC 1730623 29 100.0 32 NNNNNNNNNN ............................. TCGCCGAACCGGGATGCGGCACGAATCTCGAG 1730684 29 100.0 32 NNNNNNNNNN ............................. GTATGAATCGCTCCAATCGCCTACGAGCTCAC 1730745 29 100.0 32 NNNNNNNNNN ............................. GTCCTCGCCCCGCAGCATGATCGTCAGAGCCA 1730806 29 100.0 32 NNNNNNNNNN ............................. CCTGGCGAAACGGTGCCGGGTACGACGTCGTG 1730867 29 100.0 32 NNNNNNNNNN ............................. CCGCCGCCGATTGCTAACCCCAATGGGCCCTC 1730928 29 100.0 32 NNNNNNNNNN ............................. CACACCCGCCCCGGTGACACCGTGCTCGACCC 1730989 29 100.0 32 NNNNNNNNNN ............................. ACAGGGTGGCCCCGGGGAGGGCGTACAGGCCG 1731050 29 100.0 22 NNNNNNNNNN ............................. CTAGTCCTCTCCGGAATTACTC 1731101 29 100.0 32 NNNNNNNNNN A............................ CGGAATCGGGCCTCTGAGCGCCACGCAGAGGC 1731162 29 100.0 32 NNNNNNNNNN ............................. ACGGTGGTGCTGCCCTCCCTTGTGCGGTAGAA 1731223 29 100.0 32 NNNNNNNNNN ............................. ACAGGGTGGCCCCGGGGAGGGCGTACAGGCCG 1731284 29 100.0 31 NNNNNNNNNN ............................. GACGTCGACCTGGACCTGCGGGAGATCCAAG 1731344 29 100.0 32 NNNNNNNNNN T............................ GACAAGCGCGAGTCCTCTCATCTGATCCCCCG 1731405 29 100.0 32 NNNNNNNNNN ............................. ACCGGCGTGCCCGTTAAGGGTGGGGGTGCCCG 1731466 29 100.0 32 NNNNNNNNNN ............................. CCGCGCGCCGTCTTCGGTTTGTCCTGGCCGGC 1731527 29 100.0 32 NNNNNNNNNN ............................. ACGTTGACGGGTGCGAGCAGCGTGGACTTGGC 1731588 29 100.0 32 NNNNNNNNNN ............................. ACGTTGACGGGTGCGAGCAGCGTGGACTTGGC 1731649 29 100.0 32 NNNNNNNNNN ............................. GGAATCCGCCACTTCGTCGAACCCTGCGGTCC 1731710 29 100.0 32 NNNNNNNNNN ............................. GCGAGGACCTTGGGCTGCTTCCACACGCCGTC 1731771 29 100.0 32 NNNNNNNNNN ............................. CTCGACGACGCCCCGGCCGGCACCCCCCAGCG 1731832 29 100.0 32 NNNNNNNNNN ............................. GGGTCGTCTGGATCTGCGAGGGCGAAAAGGAT 1731893 29 100.0 32 NNNNNNNNNN ............................. ACTCGGTAAACCCCGGAGTCTCTAAGAAGACT 1731954 29 100.0 32 NNNNNNNNNN ............................. CTGCCTCGATCGCCCGCATCCAGGGAGTCTGA 1732015 29 100.0 32 NNNNNNNNNN ............................. CGGTCCGGCCAAGTGGTGTCCGTGACCGCGGA 1732076 29 100.0 32 NNNNNNNNNN ............................. CCGGTGCGCTGGCGTTCACCGGCTCGTAGATG 1732137 29 100.0 32 NNNNNNNNNN ............................. GTGCTCGCCCGCCTCGCCGAGACCACCACCCG 1732198 29 100.0 32 NNNNNNNNNN ............................. CAGGCGATCGCCGAGTTCCGTGCGGGGTACCA 1732259 29 100.0 32 NNNNNNNNNN ............................. TGCGGCTCGGGGTCGTTGATCAGTTTGTATCC 1732320 29 100.0 32 NNNNNNNNNN ............................. GCGAGGACCTTGGGCTGCTTCCACACGCCGTC 1732381 29 100.0 32 NNNNNNNNNN ............................. TCGACGAGGATGGCGTTTTGCGCCGCCACCGC 1732442 29 100.0 32 NNNNNNNNNN ............................. CCCGCATGCGCGGGGAGCAGGTAATTGCGTTG 1732503 29 100.0 32 NNNNNNNNNN ............................. TCCGCCTGGAGCACCGGGACGGGGATGACGCG 1732564 29 100.0 32 NNNNNNNNNN ............................. ACCCCGGTCGAACCGGTCAAACCGGTGATCGA 1732625 29 100.0 32 NNNNNNNNNN ............................. TTTGTGCGGGGCCTGCGGGGGGGCGGGCAAAA 1732686 29 100.0 32 NNNNNNNNNN ............................. CGGGGCTTGGGCCGGCCGCAGGGTGACCGGGC 1732747 29 100.0 32 NNNNNNNNNN ............................. ACACTACGACAAAAGACCGACACCTGTCACGG 1732808 29 100.0 32 NNNNNNNNNN ............................. GTGTCCCGGCTAGCGCCATCTCCTGCCGTCCA 1732869 29 100.0 33 NNNNNNNNNN ............................. TTCGGGTCTCGGTTAAGCGGCTTGGGTGCCAAG 1732931 29 100.0 32 NNNNNNNNNN ............................. GTTCCAGCACTTCGCGATCAGTCTCAGCTCCG 1732992 29 100.0 32 NNNNNNNNNN ............................. CGCTACTTCGACCTCAAGCCCGCCCACCGTCA 1733053 29 100.0 32 NNNNNNNNNN ............................. ATCACTTGCCAATGGCACATGCAGTTTGGTGC 1733114 29 100.0 32 NNNNNNNNNN ............................. ACAGCCCACCCCTCACTCTCGTGGGCCCGGCC 1733175 29 100.0 32 NNNNNNNNNN ............................. CACCCGGCCTCGTTCTGGTACGTCAAGGCGCC 1733236 29 100.0 32 NNNNNNNNNN ............................. TGCGCGCCTGCCGGGAACGTCGGGTGCGTAAC 1733297 29 100.0 32 NNNNNNNNNN ............................. CTCCCTCGACGACGAGCGCTCGCCAGCCGGAA 1733358 29 100.0 32 NNNNNNNNNN ............................. AGGTAGGGGGTGAGCCGCAGCCTGGGTTTGAC 1733419 29 100.0 32 NNNNNNNNNN ............................. GATACGCCCGTAGCCGGTGGCAGATCACCACC 1733480 29 100.0 32 NNNNNNNNNN ............................. AGGTGCCGTAGCTGGTGGTGACGATCATTCCG 1733541 29 100.0 32 NNNNNNNNNN ............................. ACCACCTGCAACGTGGCGTGCCGCAAGGCGGC 1733602 29 100.0 32 NNNNNNNNNN ............................. CGCTCCTGGCGGATCTGCTCGGCGAGCTCGTG 1733663 29 100.0 33 NNNNNNNNNN ............................. AGTTCAGCTCCGGACTGAACGCTCTGGCGTGGG 1733725 29 100.0 33 NNNNNNNNNN T............................ AGTTCAGCTCCGGACTGAACGCTCTGGCGTGGG 1733787 29 100.0 32 NNNNNNNNNN T............................ TGGAGACCGGCAAGAGCGGGGGAACCGTCGAG 1733848 29 100.0 32 NNNNNNNNNN ............................. CTCGGCCCGGACCCGGCGAAGCTCGGCCTGCC 1733909 29 100.0 32 NNNNNNNNNN ............................. AGGTGCTGGGCGCGGGTCATGGCGATGGCCCC 1733970 29 100.0 32 NNNNNNNNNN ............................. GACTGGGAGATGGACGATGCCGAGTTCGAGCG 1734031 29 100.0 32 NNNNNNNNNN ............................. TCGTGCGGTGGATGGTGCGGACGGACATGCCG 1734092 29 100.0 32 NNNNNNNNNN ............................. ACCGGCGAGCGCTCGAGCGCTCATGAGCGGTC 1734153 29 100.0 32 NNNNNNNNNN ............................. CACTTCACCCAATCCTGGTAGGCAGCCACCGG 1734214 29 100.0 32 NNNNNNNNNN ............................. CCCCCGGCAGCCGGCCGGGTCGACGCCGAGAC 1734275 29 100.0 32 NNNNNNNNNN ............................. CTTTGCGCCCTCACTCCGCACAGCCGCGCCGA 1734336 29 100.0 32 NNNNNNNNNN ............................. TTCGATTCCCTCGACCAGGGCCAGCAGCTCCC 1734397 29 100.0 32 NNNNNNNNNN ............................. ACGTCCACCGGGGAGGTGGACATCCAAGGGCG 1734458 29 100.0 32 NNNNNNNNNN ............................. CCAGCTGCTGAACCGTCATATCCCTCCTCCCT 1734519 29 100.0 32 NNNNNNNNNN ............................. GACCGCTGCCACTCCTCCCACTTGTCCTGGAG 1734580 29 100.0 32 NNNNNNNNNN ............................. GCCCGGGCTCACGGCAGCAAACCCGCGCCGGC 1734641 29 100.0 32 NNNNNNNNNN ............................. CGCGCTCCAAGAAGCAGGAGGCCGTGTACCGG 1734702 29 100.0 32 NNNNNNNNNN ............................. AGGAACAGGTCGCCCGGCTGGGTGCCCGTGGG 1734763 29 100.0 32 NNNNNNNNNN ............................. CCCGCTCTGAGCTGGGCAAAGACGGCGAGAAG 1734824 29 100.0 33 NNNNNNNNNN ............................. GTCGACGGCACCGAGGAGGCGGCGGGCCTCGTT 1734886 29 100.0 32 NNNNNNNNNN ............................. GTCGTATCGGGGGAGCCCATGAGGCGCTCCCC 1734947 29 100.0 32 NNNNNNNNNN ............................. ACGATCGTCCGCAAGGACGACCCCGAGTTCGA 1735008 29 100.0 32 NNNNNNNNNN ............................. CTCCCGGGGCTGACTTGCCATCGTGAGCCATC 1735069 29 100.0 32 NNNNNNNNNN ............................. CCGCACTGCCGCAGCGAACACGTACCGACACT 1735130 29 100.0 33 NNNNNNNNNN ............................. ATGACGGTGGCGCGTCTGCCCCGCCAGCTGAAG 1735192 29 100.0 35 NNNNNNNNNN ............................. AGCTTGGCCGCCTGCCTCGCGGCCTTCATCAGGTT 1735256 29 100.0 32 NNNNNNNNNN ............................. CGGGAACCGCTGGAGTTCACCGACCTGTCGAT 1735317 29 100.0 32 NNNNNNNNNN ............................. GCCGGATGCCGGACAACGTCGTAGCAATCGAC 1735378 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 80 29 31 GGGATCATCCCCGCGTGCGCGGGGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [4,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [586,158] Score: 0.18/0.18 # # Final direction: F [0.55,0.41 Confidence: LOW] >NC_014165 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1745140 29 100.0 32 TCGAGGAGGA ............................. ACCCGCCGCCGCTGAGTAACCGTGATCGCCTG 1745201 29 100.0 32 TGATCGCCTG ............................. GATCAGGAGCACGACCAGCGCGGCGTAGAACG 1745262 29 100.0 32 GCGTAGAACG ............................. CCCTCTCCGATCACGCGAAGCATGATCTCCGC 1745323 29 96.6 32 TGATCTCCGC C............................ CCCACGACGAGGGCGCCCGGTGCGCCGGTCGC 1745384 29 96.6 32 CGCCGGTCGC ..........................T.. GTCACGCAGGGTCGAGGTTACGCGTCCGCACG 1745445 29 100.0 32 CGTCCGCACG ............................. GCATCCAGTCGCAGGCGCAGGGCACGGACAAT 1745506 29 100.0 32 CACGGACAAT ............................. GCGTCCTTGTCGTAGTAGGGCCCGATGAACTC 1745567 29 100.0 32 CGATGAACTC ............................. GACCGGTTCGAGCGCATGCCCCTCGCCGAGTT 1745628 29 100.0 32 TCGCCGAGTT ............................. ATCGCCGGCAAGTCATTCACCGACCAGTACCT 1745689 29 100.0 32 ACCAGTACCT ............................. GCAGGGGCCTCGGGAAGGGGGTAGGGATGGGG 1745750 29 100.0 32 AGGGATGGGG ............................. GCCACTGCCACGGCCGACCGCGAGCTCCCCGT 1745811 29 100.0 32 AGCTCCCCGT ............................. GTGTGGACGTACAGGAAATCGGTGTACGCGCA 1745872 29 100.0 32 TGTACGCGCA ............................. TTCGGTGACGCCTGGGTCGAAACCGGCTTGGT 1745933 29 100.0 32 CCGGCTTGGT ............................. AACGTTGCTTGCTGCCACGGCAACAAGCTTGT 1745994 29 100.0 33 ACAAGCTTGT ............................. TGAAACGCACGACCGCCACAGCGCCGCGGGTGG 1746056 29 100.0 32 CCGCGGGTGG ............................. ATGACCGAGCGCATCCCGGCCGTCGCCGCCGG 1746117 29 100.0 33 TCGCCGCCGG ............................. GTACGACCCGTTGTCGATAAAGCTGTACCAGCC 1746179 29 100.0 32 TGTACCAGCC ............................. TCGGCGATCTCGTCGGCGACCGCGGCGGCCTG 1746240 29 100.0 32 CGGCGGCCTG ............................. TGACCTGCAGGGAGTCACGGAGAGTATCCATA 1746301 29 100.0 32 AGTATCCATA ............................. GCGTGTCCGCCGCTCACCACAGTGTGAAGCCG 1746362 29 100.0 32 TGTGAAGCCG ............................. CGGTCGCGCACGCTCACCCGGATCGAGTGGCT 1746423 29 100.0 31 TCGAGTGGCT ............................. GTAGCCCATTCGATGTCTGCCGCGGCTAAGC 1746483 29 96.6 32 GCGGCTAAGC A............................ AACGACGCCAGGCCGTCCGAGCTCCGGACCGT 1746544 29 100.0 32 TCCGGACCGT ............................. CAAGCAGCAGAACACTGGCCCTGGTAAGCGCG 1746605 29 100.0 32 GGTAAGCGCG ............................. GGGGGTCCATCTACTCGCCAACAACAACAACA 1746666 29 100.0 32 AACAACAACA ............................. CCTCGACCCGTTCGGAATACATGACAATGTCC 1746727 29 100.0 32 GACAATGTCC ............................. TCAACGGCATCAAGGGCATGGTGTCCAAGGCC 1746788 29 100.0 32 GTCCAAGGCC ............................. AGCGTGTCATGCTGCCCGAATTCGGGGTGCCG 1746849 29 100.0 32 CGGGGTGCCG ............................. CTGACCGGTGCCCGCACCGAGGAGCTTCGGGC 1746910 29 100.0 32 AGCTTCGGGC ............................. CGGAAGACGAGGGCGATGACCCCTTTGATCAT 1746971 29 100.0 32 CTTTGATCAT ............................. CTGGACAAGATCACGCCGCGAGACGTCCGCTC 1747032 29 100.0 32 ACGTCCGCTC ............................. AACGCAGCGATGTAGGCCGGGTCGAGGGCCGG 1747093 29 100.0 32 CGAGGGCCGG ............................. ACGCAGTTAGTCACTCAGGCATGCGAGAGGCC 1747154 29 100.0 32 GCGAGAGGCC ............................. ACCCCCGACGGGATCACCGCGCGGGTGCTGGA 1747215 29 100.0 32 GGGTGCTGGA ............................. TGTTCGATGACGGGGTGGCCAGGCTCGACCGG 1747276 29 100.0 32 GCTCGACCGG ............................. GCAGCACGCCCTGGCCCGCCTGCGGGCCGAGG 1747337 29 100.0 32 CGGGCCGAGG ............................. ACCGACTGCGGTTCACCGTTGGGCCAGACACC 1747398 29 100.0 32 GCCAGACACC ............................. ACAGGTTGATATAGGTCGGCAACCCGCAGGCG 1747459 29 100.0 32 CCCGCAGGCG ............................. CGCCGCTACTTCCTGGACGGCACTCCTGTCGA 1747520 29 100.0 32 CTCCTGTCGA ............................. AGGAGCAGGGCATGCGGAACATCCCGGTGGAC 1747581 29 100.0 32 CCCGGTGGAC ............................. GTTTGCTCTATCGCCTGATGATCTCTATGACG 1747642 29 100.0 32 CTCTATGACG ............................. ACGTACGTCGACCCCCATGCTGGCAAGACGAA 1747703 29 100.0 32 GCAAGACGAA ............................. AATGTTTTCGGCCCCCTGCAGGACCCGATCCT 1747764 29 100.0 31 ACCCGATCCT ............................. CACGCGGCGCCCTACCCCCCCGGGGGGGCCG 1747824 29 100.0 32 GGGGGGGCCG ............................. TACCTCTACCGCGACGAGGCCGGCAATGTGCT 1747885 29 100.0 33 GCAATGTGCT ............................. TGGACGTGTCGCACGCGCGGCATGGCGGGAAAT 1747947 29 100.0 32 GGCGGGAAAT ............................. TCCATGCGGCGAAGAAACCGAAGAGACCCCCT 1748008 29 100.0 GAGACCCCCT ............................. TCTCCGCGAC ========== ====== ====== ====== ========== ============================= 48 29 32 GGGATCATCCCCGCGTGCGCGGGGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [4,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [26.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [434,809] Score: 0/0.18 # # Final direction: R [0.37,0.68 Confidence: LOW] >NC_014165 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2739986 29 100.0 32 NNNNNNNNNN ............................. CTCAGCTAGCTGCACTTCGGTACCGGCGGGGT 2740047 29 100.0 32 NNNNNNNNNN ............................. CCGGACTACCCGCCGTGCCCGATGCGGCGCCT 2740108 29 100.0 32 NNNNNNNNNN ............................. TTGCCGCGGCTGGGCTATGTCCAGGAGAGCGA 2740169 29 100.0 32 NNNNNNNNNN ............................. TACTCCCCAGTCCCGGCCGGGTACTCGTCGAG 2740230 29 100.0 32 NNNNNNNNNN ............................. GGGTTCAAGCGCCACCCCGATACGGGGGAGCT 2740291 29 100.0 32 NNNNNNNNNN ............................T GAATCCAGGTTGGCCGTGCCCACCGCGTGCAC 2740352 29 100.0 32 NNNNNNNNNN ............................. ATCGGGGCAACGATGCCGACCCCGAGCGCGTA 2740413 29 100.0 32 NNNNNNNNNN ............................. CAGCAGATGGCGACGTACTCGCCTGAGATGGC 2740474 29 100.0 32 NNNNNNNNNN ............................. CTCCGGTGTTCCGCCGCGCACCCGGATCCTGG 2740535 29 100.0 32 NNNNNNNNNN ............................. GGACTGTACTCCCGATGTACTCGCGCAGGTCA 2740596 29 100.0 32 NNNNNNNNNN ............................A CGCGCGGCCGAGCTGGGCCACCCGCAAAAGTG 2740657 29 100.0 32 NNNNNNNNNN ............................. CTGCCTCGGGGTGTTGAGGCGATCGAGGTATG 2740718 29 100.0 32 NNNNNNNNNN ............................. CGGGCTGGACAGGCTCACCGCCGTCTACTGGC 2740779 29 100.0 32 NNNNNNNNNN ............................. GGGGCCGCCGCGCTCAACGTCGCCCTGCAGGA 2740840 29 100.0 32 NNNNNNNNNN ............................. AGCTCCGGATCTCTGGCCTAGGGCGCAACGTC 2740901 29 100.0 32 NNNNNNNNNN ............................. CCGTCGCCCGATCTCACGGTCAGCGGCAACGA 2740962 29 100.0 32 NNNNNNNNNN ............................T TCGTGACGACCTCAACCGGCGGCTGTATGAGC 2741023 29 100.0 32 NNNNNNNNNN ............................. GATGACACCCTGCGCGACCCGGACCAGGCCCT 2741084 29 100.0 32 NNNNNNNNNN ............................. AAACAGGGGCGCCCACCCCTCACCGGGGCAGG 2741145 29 100.0 32 NNNNNNNNNN ............................. TCATGTCAAACACGTGTTTGCGCAGGTCAAGG 2741206 29 100.0 32 NNNNNNNNNN ............................. GGGTCCTGCCCTCCGCTAGGCGGCGGGTCTTA 2741267 29 100.0 32 NNNNNNNNNN ............................. ATCATCCGCCAGCAGCATTTCTCGGTCTTGGA 2741328 29 100.0 32 NNNNNNNNNN ............................. CTCGTCCGGTAGGGACATATAGACGCATTTGG 2741389 29 100.0 32 NNNNNNNNNN ............................. CCGGCCCTGGACCCTGAATACGTCCGAGCCCT 2741450 29 100.0 32 NNNNNNNNNN ............................. CCGATGCAGCGGCTGCGGCCGCCTGAGGTGCC 2741511 29 100.0 32 NNNNNNNNNN ............................T GAGCGCCACCAGCGGCACTCGGGGTGCCCGGT 2741572 29 100.0 32 NNNNNNNNNN ............................. CACGCCAGGGCGCACCTCGACGCCATGGCCAA 2741633 29 100.0 32 NNNNNNNNNN ............................. GGTAACTGGAACCCATTTCCGAACTGTGGGCA 2741694 29 100.0 32 NNNNNNNNNN ............................. TGGCTCCAGCTCGCCGAGACGGCCGAGGCCAC 2741755 29 100.0 32 NNNNNNNNNN ............................. GAGTTCGAGTTCCTGCGGCAGACAGCGCGTGT 2741816 29 100.0 32 NNNNNNNNNN ............................. GGGGATACGGCCACGGATAGCCATGTCTGTCC 2741877 29 100.0 32 NNNNNNNNNN ............................. GGCAAGCCGTCACCGACAGCGGAACGCCGCCG 2741938 29 100.0 32 NNNNNNNNNN ............................. TCGCCGTGCATCCCCGGAGACCACGACTCCTA 2741999 29 100.0 32 NNNNNNNNNN ............................. GAGGGCGGCTGGCTCGACACGACCACCGGCGA 2742060 29 100.0 32 NNNNNNNNNN ............................T CTCGAACCGCCTGGACGAGCTCGTGCGGGTAG 2742121 29 100.0 32 NNNNNNNNNN ............................. TGGCCTGACGTGTACGCCGACCCGAGCTGGAA 2742182 29 100.0 32 NNNNNNNNNN ............................. AGCGAGGAGACAAGATGAGGCTCGAAGTTAGA 2742243 29 100.0 32 NNNNNNNNNN ............................. GACGGGCTGCGCTTACGGCAGGAAGCCCACGC 2742304 29 100.0 32 NNNNNNNNNN ............................G TCACGCCGGAGCAGTTCCAGCGGTTCAAAGCG 2742365 29 100.0 32 NNNNNNNNNN ............................. CGCTGCATCGCCCCATCGGCGTTCGGTGACAG 2742426 29 100.0 32 NNNNNNNNNN ............................. CCCCGGACGGCGCGCCACCTCTGCCAAACCGG 2742487 29 100.0 32 NNNNNNNNNN ............................. GCCGGCCTCGACGCACGCCTGAAGTGGCTCGG 2742548 29 100.0 32 NNNNNNNNNN ............................. GCTTGCCGCGCCGCTGTCGTCATCTCCGGCTA 2742609 29 100.0 32 NNNNNNNNNN ............................. CTCCCCGTCAACCTCTGCGCAGGGTGCGGCAC 2742670 29 100.0 32 NNNNNNNNNN ............................. TCGGCCGGGGGACCCGCGCGCCCCCGTCGCCC 2742731 29 100.0 32 NNNNNNNNNN ............................. CCGTTCACTGCTCTCCTCTCAGGCTCGCACCC 2742792 29 100.0 32 NNNNNNNNNN ............................. CGCGGCACCCAGCCGGCGGGGATGGTGATGAT 2742853 29 100.0 33 NNNNNNNNNN ............................. CGGCGGTGGGTCAACGCCGGGCGCCCCAAAGAA 2742915 29 100.0 33 NNNNNNNNNN ............................. ACCACGATCATCGGCATGCCGCCCAGGTCCGGA 2742977 29 100.0 32 NNNNNNNNNN ............................. TCGTCACCGGCGAGGGCGACACCCTCGGGGAG 2743038 29 100.0 32 NNNNNNNNNN ............................. TCGCCGAGCTGATGCGCGCCCACGGCATACCG 2743099 29 100.0 32 NNNNNNNNNN ............................. GGTTCGCCCCACCCCGCAGCATGGGGTGGGGC 2743160 29 100.0 32 NNNNNNNNNN ............................. GTGGGCGAACCGTCCTCGCGGGGGAACCACTC 2743221 29 100.0 32 NNNNNNNNNN ............................. CCCGGGCCTCCCTATGGACGGCACCTATCGGG 2743282 29 100.0 32 NNNNNNNNNN ............................. GGTGGCCCATCGTCGGCTGTCCCACTGGAGCC 2743343 29 100.0 32 NNNNNNNNNN ............................. ATGGCGCCGCGGGCGGTCTTAAGGAGGGTGAA 2743404 29 100.0 32 NNNNNNNNNN ............................. GGGCGCGGGTTGGTCTGCCTGTCCTGGATGAA 2743465 29 100.0 32 NNNNNNNNNN ............................. CGGTCGGGGATGCCGTGCCGCGCGGCCCGCCG 2743526 29 100.0 32 NNNNNNNNNN ............................. GTGGTGGATTTCCTGGGCGGGACGGTCATCCC 2743587 29 100.0 32 NNNNNNNNNN ............................. GGGCGCGGGTTGGTCTGCCTGTCCTGGATGAA 2743648 29 100.0 32 NNNNNNNNNN ............................. CGGTCGGGGATGCCGTGCCGCGCGGCCCGCCG 2743709 29 100.0 32 NNNNNNNNNN ............................. GTCTACGACCTCCAAACCCTCGCCGAGCTGGA 2743770 29 100.0 32 NNNNNNNNNN ............................. TCCACGATCACCGCCGAGGGCGTGCTCCTGTA 2743831 29 100.0 32 NNNNNNNNNN ............................. GTGCTGGTCGCGAGGGGTCCGGCCCACGCGAG 2743892 29 100.0 32 NNNNNNNNNN ............................. CGGGAGTCGATCACCTTTGAGGAGCTGTACGC 2743953 29 100.0 32 NNNNNNNNNN ............................. CGGGGTGAGAGGTGGTTTCAACCGTGATTTGG 2744014 29 100.0 32 NNNNNNNNNN ............................. TTCTGCACGAAGGTCGCCACACGATCCCGGAT 2744075 29 100.0 32 NNNNNNNNNN ............................. CCATGCCCAACTACCCTGCGCGCCCTCGGCAC 2744136 29 100.0 32 NNNNNNNNNN ............................. GGTGCCGGTGGACTGCTGCTGGTTCTGCTCGT 2744197 29 100.0 33 NNNNNNNNNN ............................. CCTCAGCGCGGCGGCGAGAGACGGCACGCTCGG 2744259 29 100.0 32 NNNNNNNNNN ............................. TCCGCGCGCACTCCCGGGGACCGTGGTCCGGG 2744320 29 100.0 32 NNNNNNNNNN ............................G TCAAGCGCCTCGACTAGGTCGCGCACGCGCTC 2744381 29 100.0 32 NNNNNNNNNN ............................. TCCTCCCCCTGCAGGGTGATCACGTCGATTTC 2744442 29 100.0 33 NNNNNNNNNN ............................A CTCGACCCCAAACTCGGCCCCGCCGCGGCGGCC 2744504 29 100.0 32 NNNNNNNNNN ............................. TGGGCCAGATCCGATTTCGACCTAGCCCAGTG 2744565 29 100.0 32 NNNNNNNNNN ............................. CGTCATACAGGGCGCCGCGGCCGATGAAGTGA 2744626 29 100.0 32 NNNNNNNNNN ............................. CAGCCGAACGCCACGGCCACGGCCAGGAGCGA 2744687 29 100.0 32 NNNNNNNNNN ............................T CGGAGGGGAGGAAGCCGCCGCGCGTGAGCCAC 2744748 29 100.0 32 NNNNNNNNNN ............................. CCCGTAAAAGATCGTGCCCGCCGTGCCCGACA 2744809 29 100.0 31 NNNNNNNNNN ............................. CAGCCCTTGATCACGCTGGGGAGCTGGGGAT 2744869 29 100.0 33 NNNNNNNNNN ............................. CGTCGGCATCGAGCCCCGGCCGCACTGGCCGGA 2744931 29 100.0 33 NNNNNNNNNN ............................A CTCGACCCCAAACTCGGCCCCGCCGCGGCGGCC 2744993 29 100.0 32 NNNNNNNNNN ............................. GCCGCGTTCGGGTCCATGCCCCACTCCTTTCT 2745054 29 100.0 32 NNNNNNNNNN ............................T CGAGCGGTCCGTGCTGCGAATCTCCGAGTGAC 2745115 29 100.0 32 NNNNNNNNNN ............................. CTAGCGCCTAAGGCCGGGGCATGTGCCCCGGC 2745176 29 100.0 32 NNNNNNNNNN ............................. CCGGCGGCGCGTAGCCGGGCGAGCGCGGCGTC 2745237 29 100.0 32 NNNNNNNNNN ............................T CGGGGCACGCCACTCGGCAGGCAGGTCTACCA 2745298 29 100.0 32 NNNNNNNNNN ............................. ACGGCCCGGATCACGCTCCGCTGCTGGGACAG 2745359 29 100.0 32 NNNNNNNNNN ............................. GCCTCCCCACCGGCACCCGCGTCCGCGAGATC 2745420 29 100.0 32 NNNNNNNNNN ............................. AGGCTGCTCGACCAGGGGTCGCCGTACCGGGA 2745481 29 100.0 32 NNNNNNNNNN ............................. AGCCACGCGACCCGGTACCAGTACTCGGTGAG 2745542 29 100.0 32 NNNNNNNNNN ............................. TGCGGCCAGTGGTTGAAGTAGACGCGGTGCTT 2745603 29 100.0 32 NNNNNNNNNN ............................. TGCGGCCAGTGGTTGAAGTAGACGCGGTGCTT 2745664 29 100.0 32 NNNNNNNNNN ............................. TGCGGCCAGTGGTTGAAGTAGACGCGGTGCTT 2745725 29 100.0 32 NNNNNNNNNN ............................. TGCGGCCAGTGGTTGAAGTAGACGCGGTGCTT 2745786 29 100.0 32 NNNNNNNNNN ............................. TCCTTGGGCTTTTTGCTGGTCGGCCGGGGCAG 2745847 29 100.0 32 NNNNNNNNNN ............................. CGGTGGTTCACCTCCCGGCGCCAGCTCGCCAC 2745908 29 100.0 32 NNNNNNNNNN ............................. GTCGAGGCCGTAGTCTGCGACTCGCTCGGCCT 2745969 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 99 29 32 GTGCTCCCCGCGCACGCGGGGATGATCCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [4-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [38.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [1308,1195] Score: 0/0.18 # # Final direction: F [0.68,0.37 Confidence: LOW] >NC_014165 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 575392 31 93.5 37 CGCTCCATTC ....................A...G...... AGAAGGGCAAGAGCGCGGCCGCGGCGGGCCGGATCAT 575460 31 96.8 46 GCCGGATCAT ....T.......................... TGGAGTCCGAGGACGGGCAGCGGCACACCCGAATCGAGGTGCGCGT 575537 31 100.0 35 AGGTGCGCGT ............................... CTGCGGATCATCGCATATATCAACGCCTCCAAGTC 575603 31 100.0 38 CCTCCAAGTC ............................... ATGACAAATTTTTCCGGATCCATCGCGTACCATGAGAT 575672 31 100.0 38 ACCATGAGAT ............................... CCGCACCTGCTGGGACCTGGGCGACCCTGCCTCGCACC 575741 31 100.0 33 GCCTCGCACC ............................... GCTGACCGTCCTGCCCGTGCTCCCAGTAGCCAT 575805 31 100.0 CAGTAGCCAT ............................... CCCAAGGTAAA ========== ====== ====== ====== ========== =============================== 7 31 37 GTTGCGATCCCTCTAGGGGTGATGAGCGGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [41.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [456,304] Score: 0/0.18 # # Final direction: R [0.64,0.78 Confidence: LOW] >NC_014166 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2825927 30 100.0 36 NNNNNNNNNN .............................. GATTATCACAAAGAAAATAGTGATATTTCAGTTTAT 2825993 30 100.0 36 NNNNNNNNNN .............................. ATAAAAAGTTTGGAACAACAATTATTACTAAAGCTC 2826059 30 100.0 35 NNNNNNNNNN .............................. ATTTTATTAGATTGGATTGAAGAGTTTCCAGAAAC 2826124 30 100.0 34 NNNNNNNNNN .............................. TTCGTATAATCAAAAAATTCAAATTCTTTATTTG 2826188 30 100.0 35 NNNNNNNNNN .............................. ACACTTTCACCTGTCACTCTACTCGTGGCACAGAG 2826253 30 100.0 38 NNNNNNNNNN .............................. TAAAGAAGTTAAAGACTATTTTGAAAAACTTTGTGATG 2826321 30 100.0 36 NNNNNNNNNN .............................. AAAACAAGACCTATACAAATAGAGCCTTGGTTTTTT 2826387 30 100.0 36 NNNNNNNNNN .............................. GGATAAACCACAAGAAGATATTAATATTGTCAATAC 2826453 30 100.0 36 NNNNNNNNNN .............................. ATATCTCATTTGGCAATTCAATATAAATCTTATTAT 2826519 30 100.0 34 NNNNNNNNNN .............................. AAAGTTACTCAATTTGGTTGGGTTGTTAGCCCTA 2826583 30 100.0 36 NNNNNNNNNN .............................. AAAGATGATAAGACTATATTAGATAGAATTCAAATT 2826649 30 100.0 34 NNNNNNNNNN .............................. TTAATAACAGTTTCTGCAAATTCTTTAGCATTTT 2826713 30 100.0 36 NNNNNNNNNN .............................. TGAGGAAAAAGAAAAATACAAAAGTGAATCATGGAA 2826779 30 100.0 35 NNNNNNNNNN .............................. AAAATATATAAGATTAATAAGCCCACAATCAAAAG 2826844 30 100.0 35 NNNNNNNNNN .............................. ATAAAACAGAAAGAGAAATGAGAAAAATCTTAGGA 2826909 30 100.0 36 NNNNNNNNNN ..........A................... TAATTTTTATACTTGCAATAATTGCGGAATGACACT 2826975 30 100.0 35 NNNNNNNNNN ....................A......... TAAGATAATCAAGTTTTCCAAAACGAGGAAACTCT 2827040 30 100.0 1 NNNNNNNNNN ................ATG.A.TGAA.CTC NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 18 30 35 CTTGAACCAAGACATATGATGTATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [165,235] Score: 0/0.18 # # Final direction: F [4.91,0 Confidence: HIGH] >NC_014168 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 2209207 20 100.0 34 NNNNNNNNNN .................... GCCGTACTGCCCCGGGCCGCCGTACTGCCCCGGG 2209261 20 100.0 34 NNNNNNNNNN .................... CCCGAGCGGGGGATACTGCGGGTACTGCGGCTGG 2209315 20 100.0 1 NNNNNNNNNN .................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================== 3 20 34 CCGCCGTACTGCCCCGGGCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [36.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [952,214] Score: 0.18/0.18 # # Final direction: F [0.45,0.37 Confidence: LOW] >NC_014171 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 1418995 20 100.0 34 NNNNNNNNNN .................... AGTAGCACCTGCTGGTCCTTGAATACCTTGAGGT 1419049 20 100.0 25 NNNNNNNNNN .................... CGCTGGTCCTTGAGCACCTTGCACA 1419094 20 100.0 25 NNNNNNNNNN .................... CGCTGGTCCTTGAATACCTTGAGGC 1419139 20 100.0 34 NNNNNNNNNN ..TTG..GT........... TTGAACACCTGCTGGTCCTTGAGCACCTTGAGGT 1419193 20 100.0 52 NNNNNNNNNN ..TTG..GT........... TTGCGCACCCGCCGGTCCTTGAGGCCCGGTAGCACCCGTAGCACCCGCCGGT 1419265 20 100.0 25 NNNNNNNNNN ..TTG..GC..G........ CGTAGCACCCGCCGGTCCTTGAGGC 1419310 20 100.0 1 NNNNNNNNNN ........A........... NNNNNNNNNN ========== ====== ====== ====== ========== ==================== 7 20 32 CCAGTAGCGCCAGTAGCACC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [75,735] Score: 0.18/0.18 # # Final direction: F [0.78,0.18 Confidence: MEDIUM] >NC_014171 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 2815294 19 100.0 47 NNNNNNNNNN ................... ATTATTCTATTACATTATTTTGTAAACTCTATTAAACTAGTCTTTCC 2815360 19 100.0 48 NNNNNNNNNN ................... TTAGTTGCACAAATACCCTCTCCTACTCTCATTTTTTAATTCTATTTA 2815427 19 100.0 1 NNNNNNNNNN ................... NNNNNNNNNN ========== ====== ====== ====== ========== =================== 3 19 47 GGAATGAATATTCATTCCT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.42%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [40,22] Score: 0/0.18 # # Final direction: NA [0,0 Confidence: NA] >NC_014205 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 541480 24 100.0 39 AGCACTGAAA ........................ AATAGAAGCGGTTAAGAAGGGCTATTATCACATGGATCG 541543 24 100.0 43 ACATGGATCG ........................ GGTGTCTGTGTCTGGCTAGGAGTAGTTGTTTCTGATCCACTAC 541610 24 100.0 40 GATCCACTAC ........................ ATATGTTTCCACTGCTATCAAGTGCTTTAACCCTTATTAT 541674 24 100.0 41 CCCTTATTAT ........................ TTTACTTGGAAGCCGTGTGGGACATAGAATCTAACCGTTTG 541739 24 100.0 39 TAACCGTTTG ........................ CAAACATTTTGAAAACACTTGATAATTCCCATAGGCTCC 541802 24 100.0 39 CATAGGCTCC ........................ TTTATTACTAGATACCAATTGTTAAACCTTGCCTCAATT 541865 24 100.0 43 TGCCTCAATT ........................ GCTCCATATTTGGCTTGACAAAAAGCTAAAAACGTTGATAACT 541932 24 100.0 45 GTTGATAACT ........................ CTCGGTCTAGCTGCTGCAAACAATGAAAGCATAAGCCCCTCTTCA 542001 24 100.0 43 CCCCTCTTCA ........................ GGGCAAGAGGGCAAGAGGGCAAAACAAACAATATATTGTTATG 542068 24 100.0 TATTGTTATG ........................ TGTTCTTCAC ========== ====== ====== ====== ========== ======================== 10 24 41 CTTTCAATTTTTCTAAATTGTTTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.17%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [48.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [28,816] Score: 0.18/0.18 # # Final direction: R [0,4.95 Confidence: HIGH] >NC_014205 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 193885 25 88.0 42 GAAATTCACT --.............A......... CAAGTCAAAATATGACTACGATGGAACAGGGAGCAAGGTCCT 193952 25 100.0 43 GCAAGGTCCT ......................... AAGGGACTTGGATAACAGACTGGGAAAAAGATAAGATTTGGGA 194020 25 96.0 40 AGATTTGGGA .............T........... CTAATGAAATTGGTAGACTACAAACAATAAGCGATGTAAG 194085 25 100.0 40 GCGATGTAAG ......................... CACGGTTTATTCTTACCGGTAATTATGAGTGGAAAATAAT 194150 25 100.0 GGAAAATAAT ......................... TTTGGTTCGA ========== ====== ====== ====== ========== ========================= 5 25 41 CCTTCAATTCTTTCTGTGTTGTTAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [60.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [129,230] Score: 0/0.18 # # Final direction: R [0,0.68 Confidence: HIGH] >NC_014205 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 716213 25 100.0 41 TCGAACCAAA ......................... CTAACGTTTTCCTTATTGATCACTAAGAATATGGTATGTAT 716279 25 100.0 39 TGGTATGTAT ......................... TTGAAAATCAGCATACGCTCTGGTCCTCTCGGTGCAAAA 716343 25 100.0 41 CGGTGCAAAA ......................... ACATTTAGCGATGTTGAATATGTATATATATGTGATGGCAC 716409 25 100.0 GTGATGGCAC ......................... CCAATATCCT ========== ====== ====== ====== ========== ========================= 4 25 40 GTAACAACACAAAAAGAATTGAAGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1079,77] Score: 0.18/0.18 # # Final direction: F [0.18,0 Confidence: MEDIUM] >NC_014206 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1479092 29 100.0 37 NNNNNNNNNN ............................. ACGTGGTGGCCAGCGACACGACGAGAATTTGTTTCAC 1479158 29 100.0 36 NNNNNNNNNN ............................. TGCATCAATTCAGTGGTACGAACGCGGAATTTATGC 1479223 29 100.0 36 NNNNNNNNNN ............................. TTAGAAACACTACACCAATTCAAACTCGTGAGTGAG 1479288 29 100.0 38 NNNNNNNNNN ............................. TGGGACGAATCGGACGGCGTTTTCACGATACAACACAA 1479355 29 100.0 37 NNNNNNNNNN ............................. TGATTGTCATCCAAAACTATAAAGTGCACAGTAGCCC 1479421 29 100.0 38 NNNNNNNNNN ............................. AACACATAAAATCGTGGAGTATGCGAGCGATTATTTAG 1479488 29 100.0 36 NNNNNNNNNN ............................. TTTTAAAACGTCCGTTACATTTGACGGCATCACTGG 1479553 29 100.0 40 NNNNNNNNNN ............................. TTTCATTGACTGGTGTATGGCTTCACGAAGCGGACAATCC 1479622 29 100.0 35 NNNNNNNNNN ............................. AAAACGGATAAATGTGGTATGATAGGCGTGTAATA 1479686 29 100.0 35 NNNNNNNNNN ............................. TAAACTTCTTGCTGAAAATAAAATTGAGGAAGCGA 1479750 29 100.0 35 NNNNNNNNNN ............................. ATTGAATCGCGGGGTGGAGCAACGGCAAGACAAAC 1479814 29 100.0 36 NNNNNNNNNN ............................. GCTACTGCAAGAGATTGCCTTTTTATACCCGACCGG 1479879 29 100.0 36 NNNNNNNNNN ............................. TGTTCAGCTTAGAAATGTCTGCGAAATCACTTCTCA 1479944 29 100.0 35 NNNNNNNNNN ............................. TTCTCCATTGAAAGAGACATGAGATACTCAACCGT 1480008 29 100.0 35 NNNNNNNNNN ............................. CGATCCCCTTGACGCCCCCCTCGCGATCCGGGAGC 1480072 29 100.0 35 NNNNNNNNNN ............................. AACGAGGACAGCCGCGACATATGCAGACGTAATCG 1480136 29 100.0 36 NNNNNNNNNN ............................. ATAAAGCGATCCCACCAATCGCAGACAGGCCAACGC 1480201 29 100.0 39 NNNNNNNNNN ............................. ACTTTACGTTCTGCTGTCTCAGAATCAACAAAATCGTAA 1480269 29 100.0 33 NNNNNNNNNN ............................. AAAGCCGTTTTGTTCAACGAATTGAATAATCTC 1480331 29 100.0 37 NNNNNNNNNN ............................. ACGACGTAGCAGGAAAAGAATTAGGTAAGGCAATCAC 1480397 29 100.0 35 NNNNNNNNNN ............................. TTTGGTTGTGGTCGGTGTTGGCATCGGTTTTGCTT 1480461 29 100.0 35 NNNNNNNNNN ............................. CGTCAATGTCTGACCTGTCGTTGACGTAGCAGGAG 1480525 29 100.0 36 NNNNNNNNNN ............................. TATAATTCTTTTGATTATGGCGGCTCGATGTTTTAT 1480590 29 100.0 36 NNNNNNNNNN ............................. CGGATCAAACACCGCCTTGGCAACAACAAAACCGAC 1480655 29 100.0 37 NNNNNNNNNN ............................. TACGACCGCGCCCCGCTCCGCGCGGGCGGGGCCCCGC 1480721 29 100.0 35 NNNNNNNNNN ............................. AGTCGAGTGTGTATGTTTGGTTTCGCACAGCATTA 1480785 29 100.0 35 NNNNNNNNNN ............................. AGAAGAGGATAGCGGGAGTTTGTGTTTGAATTATA 1480849 29 100.0 39 NNNNNNNNNN ............................. CCGAATGTGCAACAACTGCATCATTCACCTGCTTCACCG 1480917 29 100.0 35 NNNNNNNNNN ............................. AGAATTGGCACCTCATCATCTTGCAACGCAACATT 1480981 29 100.0 39 NNNNNNNNNN ............................. TGCGCACAAGATGCTGACAGAGAAGGAGCAGGAATGCGA 1481049 29 100.0 35 NNNNNNNNNN ............................. AACAACACATGAACGGGATTTGTCGCTTCTACAGC 1481113 29 100.0 36 NNNNNNNNNN ............................. AAAACTCTTCGGTCAGCTTCAACTTCTGATGTATTT 1481178 29 100.0 35 NNNNNNNNNN ............................. AACACTTCCGCAACCGTTAGGCTGTCTGTGACAAC 1481242 29 100.0 37 NNNNNNNNNN ............................. GAAGCATATTCACATCATCAGCCTCAACCGTATCGCC 1481308 29 100.0 35 NNNNNNNNNN ............................. GAAGGGGACGGAGAAGAATTTACGATTGCATCATT 1481372 29 100.0 37 NNNNNNNNNN ............................. TGTGAATGTAGAGAGCGAAAAGCCTGGAAGCGTCGGT 1481438 29 100.0 35 NNNNNNNNNN ............................. TGAAGAGATTGTGTCGTTTATTCGCGTGTATGAAG 1481502 29 100.0 36 NNNNNNNNNN ............................. CAAGAAGCTGATTTCCGTTCGGTGTACCGATATACA 1481567 29 100.0 35 NNNNNNNNNN ............................. CAAGCGGCAAGATCATGGGTATTAAAGGGGGATAC 1481631 29 100.0 37 NNNNNNNNNN ............................. TTTGATTTTCTCCAGTTCCTTCATCAGAGCAGAGATG 1481697 29 100.0 37 NNNNNNNNNN ............................. AAAAAACATAGAAAAGAATAAGTTTTTCAGGGGGAGC 1481763 29 100.0 37 NNNNNNNNNN ............................. AATCTTTTGTCATTCGTCATTTCCCCTTTCAGTATTT 1481829 29 100.0 34 NNNNNNNNNN ............................. GCAAAATTGCGCCAATTCCCGCCAGCAGGGATCC 1481892 29 100.0 36 NNNNNNNNNN ............................. CATCACTACTACACCGCCAACTACGCCGGCAGTCGG 1481957 29 100.0 35 NNNNNNNNNN ............................. TCGGACGATACACACTCATTTTGCTGACGTCACCG 1482021 29 100.0 35 NNNNNNNNNN ............................. GTCAACAATCGTAGTTTATATTGTTGTCCGTCAAT 1482085 29 100.0 38 NNNNNNNNNN ............................. GTAGCACGTCCAACCGGTTTGCGGCGTGTATAAATCCC 1482152 29 100.0 35 NNNNNNNNNN ............................. TCCTCACTTTCTTCGAATCGCCCCTCGCACTCTTT 1482216 29 100.0 37 NNNNNNNNNN ............................. TGATTCGTTCTCTCCGCCACTCAACCGGCTTTTCTGT 1482282 29 100.0 35 NNNNNNNNNN ............................. AGCAGAGCAATAATAATCAGCAACACCCATGTAAC 1482346 29 100.0 35 NNNNNNNNNN ............................. GCGATAAACACACGAACGAAAAACATGGCGTGTTC 1482410 29 100.0 36 NNNNNNNNNN ............................. AAGCACGTAAAGCTATTACTAATGCGTCTGCCGATT 1482475 29 100.0 37 NNNNNNNNNN ............................. TAGCTTGGGTGAGCTGATACATGCCGGCTTGACGTTC 1482541 29 100.0 36 NNNNNNNNNN ............................. CAAGAGTTATAACCTTACAATATGTCCCACTCCCTG 1482606 29 100.0 37 NNNNNNNNNN ............................. TTGACATAGATGTATCGAATTGGCTGCTTGCGACCCA 1482672 29 100.0 37 NNNNNNNNNN ............................. CGGTTCCACGCTTCTGCCAGTTCTGCCTGGCGGACAG 1482738 29 100.0 34 NNNNNNNNNN ............................. TTAAAGATAAATCTGGCGGCATCGCTCGGCGCGT 1482801 29 100.0 37 NNNNNNNNNN ............................. TGAATATCTCGGTGAGCCGATTGGGAGTGGTGTGGTG 1482867 29 100.0 36 NNNNNNNNNN ............................. GTTCTTGCTTCACTCGTTGCTTATGAACACCAGTAG 1482932 29 100.0 36 NNNNNNNNNN ............................. GAAGTTGAACAGTGAAGTGATTTCATAATGAGCAAG 1482997 29 100.0 35 NNNNNNNNNN ............................. AACTGGAGAAGATCGGGATCATCGTCTCGGCGAAT 1483061 29 100.0 35 NNNNNNNNNN ............................. GGAAAATGGGCGGTACCGAGTGCAGCCGAACATAT 1483125 29 100.0 34 NNNNNNNNNN ............................. TCAGAAATTGGATAAAGTCTGGGAAGATTTCTTC 1483188 29 100.0 35 NNNNNNNNNN ............................. GGAATGCGGATATTGAGAGGTGGCGACTACAGCGG 1483252 29 100.0 36 NNNNNNNNNN ............................. GAGGAGCGAAAGCAATGGTTTGAACAAGAATGGCAA 1483317 29 100.0 39 NNNNNNNNNN ............................. TCTAAGTCTTTTGAAATTTACTCATTCGAATATAACGGG 1483385 29 100.0 37 NNNNNNNNNN ............................. ACAGCGTACTTGCGGAATTACTTGGTTGGGAAATCGA 1483451 29 100.0 36 NNNNNNNNNN ............................. GTGTTTAGCGCCTGCTGTGTTCTTTACGTCCGTATA 1483516 29 100.0 38 NNNNNNNNNN ............................. TATATATCAGCACTTGGTCCGTTCCTGCTTTTTTCTTG 1483583 29 100.0 36 NNNNNNNNNN ............................. ACTATAACATCCGACTGAGGAACAGCAACACCGGCC 1483648 29 100.0 37 NNNNNNNNNN ............................. TAAAAACAAGCGCATACCGAACATGTTTCACATTATA 1483714 29 100.0 36 NNNNNNNNNN ............................. TCGTCTCCGATGGCCGCTAATCCACTGGGACATCTG 1483779 29 100.0 37 NNNNNNNNNN ............................. AAAAGCGAATAATGCTTCATTCTTCAAATGGTTGTCT 1483845 29 100.0 37 NNNNNNNNNN ............................. CAATTGATGCCTTTAAAGACTGCTTCACCGCATCGTT 1483911 29 100.0 37 NNNNNNNNNN ............................. AGTTCAAGACTTTTAATAACTCGCTCAATTAAAGTTT 1483977 29 100.0 37 NNNNNNNNNN ............................. GTCAATTTCCCTGCTTTTATCAAATTCGCTTATGAGA 1484043 29 100.0 35 NNNNNNNNNN ............................. CTTGTTCTGGCGACATAACGGATTTAATGTTACTC 1484107 29 100.0 37 NNNNNNNNNN ............................. CTCATTGAACCAGAGCCGGCTGGTATCTTGATTACTA 1484173 29 100.0 36 NNNNNNNNNN ............................. GTGTTTTCGGTTTTGGTGGTAACGCGACATAAGCGG 1484238 29 100.0 36 NNNNNNNNNN ............................. GAATGAAGCTGACATCGAGTCAACGCTGGTTCAATT 1484303 29 100.0 35 NNNNNNNNNN ............................. ATCTTTTTTCCGGCGTGATGAAATGCGGTCGTTGC 1484367 29 100.0 36 NNNNNNNNNN ............................. AAGCTCTCTTTTATCGGGATGTAAGATAACGACATC 1484432 29 100.0 36 NNNNNNNNNN ............................. AATCCAGCTGTCGTTCTAAAAATCTGACCCAATCAC 1484497 29 100.0 35 NNNNNNNNNN ............................. ACAAAGGAGATGAGCAACATGCGAAACAGGAAGCC 1484561 29 100.0 37 NNNNNNNNNN ............................. AGCTGATTTACAGACAGATGCGGTCGAAAAAGAGTTA 1484627 29 100.0 35 NNNNNNNNNN ............................. TACAAACACCGGCGGCGTCTTGAATACACCTAATT 1484691 29 100.0 37 NNNNNNNNNN ............................. TTGGAGGAGATCGTCACGACGATCAAGCCGTATCTTG 1484757 29 100.0 38 NNNNNNNNNN ............................. ATGTGTACGATTGGTCAAGATCGCTAAAAGCCTGCTCG 1484824 29 100.0 36 NNNNNNNNNN ............................. AATCAACACGAGTAAAATGACCACAGAACAAGATTT 1484889 29 100.0 1 NNNNNNNNNN ....................TG.AA.TTA NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 90 29 36 GTTTTATCTGAACGGAGAGGGATTTAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.07%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [200,3158] Score: 0.18/0.18 # # Final direction: F [0.78,0.45 Confidence: LOW] >NC_014206 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1488074 29 100.0 38 CCCCTAATCT ............................. GTGATAAGGTTTTTTCATTCCTGCCATACATAAAGCAA 1488141 29 100.0 35 CATAAAGCAA ............................. ATAACAGCACACCTAAAATATTACTGCACACCTTC 1488205 29 100.0 35 GCACACCTTC ............................. AACAACCGAAACCGCTCAATATTCATCAGAAACTC 1488269 29 100.0 35 TCAGAAACTC ............................. CCGATGCGCCGCTGCCCAAGTTCACGGTCGATATA 1488333 29 100.0 37 GGTCGATATA ............................. TTGTCAGCTATTTTTGTATTGATATAATGGAATTTGT 1488399 29 100.0 36 TGGAATTTGT ............................. TAATACATGTGACGGTCACGCCAAGACGTTTGCTGG 1488464 29 100.0 36 CGTTTGCTGG ............................. TTTAATGAAATCTTATGACCGTTATACTGGTAATTT 1488529 29 100.0 38 CTGGTAATTT ............................. GTAGGATGGTATGAGTATTACACAGGCGGGGAAGCAAG 1488596 29 100.0 35 GGGAAGCAAG ............................. ATGGAGGACCTATGACCGTTCACATTCGCCGTGAC 1488660 29 100.0 37 TCGCCGTGAC ............................. TATTAAAGTTGGTAGGAGCCAAACGGGAAACATTCGG 1488726 29 100.0 35 AAACATTCGG ............................. TATTTGTACTTTAAACGCTTCACGAACTTTTTAAA 1488790 29 100.0 35 ACTTTTTAAA ............................. GAAAAAGCATTAGAAAACACAGAATTAATGTTAAC 1488854 29 100.0 38 TAATGTTAAC ............................. GATGATCCTGACGGCTTAGGATTTATCGGCAATGATCT 1488921 29 100.0 GCAATGATCT ............................. ATTACGGAAAA ========== ====== ====== ====== ========== ============================= 14 29 36 GTTTTATCTGAACGGAGAGGGATTTAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.07%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [3223,218] Score: 0.18/0.18 # # Final direction: F [0.55,0 Confidence: HIGH] >NC_014206 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1491178 28 100.0 36 CAGGGCATTA ............................ GATAGCCGAATGATCTTGATGCATAAACGATAGCAA 1491242 28 100.0 38 ACGATAGCAA ............................ GATATGATGCGGACGCGCATACGCATACCCCCTCTTGC 1491308 28 100.0 39 CCCCTCTTGC ............................ GCGCGAATGATGGCGTGTATCGAGGCGTTCCCGAACTGA 1491375 28 100.0 36 CCCGAACTGA ............................ GGCAATATGTCCCGTCGCATCAAGCCTCAAGACAGG 1491439 28 100.0 36 TCAAGACAGG ............................ GGCGTCGATTTTACGGAAATCGCTAAAATCAAGACC 1491503 28 100.0 36 AATCAAGACC ............................ GTTTCGTCAAAATGGTCTTTCCACGGTCCATTTTCG 1491567 28 100.0 39 TCCATTTTCG ............................ GTGCGAAAAAAATACACACTAGCCGACATGGTGGCACTA 1491634 28 100.0 37 GGTGGCACTA ............................ GTCGTATTTCGTGAAATTGCTCGATACGTTTTTAATC 1491699 28 100.0 39 GTTTTTAATC ............................ GTTTGACCGGTATATGGATCACGTTGCATAAATTCATCG 1491766 28 100.0 37 AAATTCATCG ............................ GGTTTTCAATAGTGGGAAATAACGTATTTGTCCATAC 1491831 28 100.0 35 TTGTCCATAC ............................ GCAGTATACGATTAAAGGTCTTCATCCGGCTCTTT 1491894 28 100.0 40 CCGGCTCTTT ............................ GTTGTTCCTCGAGGTACTCCTCCCTTGTCTTCGCTCCTTG 1491962 28 100.0 37 TCGCTCCTTG ............................ GGAGGAATAGAGGATTACAAGAATTCCGGTTTGAGTC 1492027 28 100.0 42 GGTTTGAGTC ............................ GGTGATATAGTCACAAACCATGAAAATAGCAAAGGCGGCCAC 1492097 28 100.0 39 AGGCGGCCAC ............................ GAAACAGAAGACGCCGTTCGACGTTTCCAAATGGTTTAC 1492164 28 100.0 38 AATGGTTTAC ............................ GAGAAAGCCTGTCTTGAGGCTTGATGCGACGGGACATA 1492230 28 100.0 40 ACGGGACATA ............................ GACATGTCGAGAGTCTCACGAGAGAGGCGGAAAGAAGTCG 1492298 28 100.0 37 AAAGAAGTCG ............................ GATCGTATGGCAATCCACATCCACATACAGAGCCCTC 1492363 28 100.0 36 CAGAGCCCTC ............................ GGCCAAGACGACGGCATACAAGGATCAAAATACTAC 1492427 28 100.0 39 AAAATACTAC ............................ GTTTTCAGTATACATTTGGCCTTTCGCTTGCACAGCTGC 1492494 28 100.0 39 GCACAGCTGC ............................ GTGTGAATCAATAACATGCCTACTTCCGTATTTGTCAAT 1492561 28 100.0 35 ATTTGTCAAT ............................ GCAAAAGGATCAGTGAAAGTACTGATCGGTGGAAA 1492624 28 100.0 37 TCGGTGGAAA ............................ CTGCAAATAGTAGGTGTTCCAAGACCTAATAATAAAA 1492689 28 100.0 36 AATAATAAAA ............................ CATGCTGGGAATGTGGAACTTGGCAACCCTATTCCC 1492753 28 100.0 36 CCCTATTCCC ............................ CTACGCATTCACCGCACGCAGGCGGTAGTACCACGT 1492817 28 100.0 36 AGTACCACGT ............................ CTACGCATTCACCGCACGCAGGCGGTAGTACCACGT 1492881 28 100.0 AGTACCACGT ............................ CGGAGAGAAA ========== ====== ====== ====== ========== ============================ 27 28 37 GTTTTATCTGAACGGAGAGGGATTTAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.29%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [56.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [346,2476] Score: 0.18/0.18 # # Final direction: R [0.37,0.45 Confidence: LOW] >NC_014209 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 21980 29 96.6 39 ATCAATTTAA .....T....................... CTGCTATTGCTAATGAGCTTATTCTGAGGCTTTATGCAG 22048 29 100.0 36 CTTTATGCAG ............................. CATTTAACACCTCCTCAACAATCAAACCATAATTTC 22113 29 100.0 36 CCATAATTTC ............................. CAAATCTATTCTATCAGAAGGTATAAGATCCTCAGT 22178 29 100.0 36 GATCCTCAGT ............................. GTAGATAATGTGTATAACTTTTATCCAATTTATGAT 22243 29 100.0 37 AATTTATGAT ............................. TATGATTATTAATGTTCTTCCTAACAGTCCTTTTGAT 22309 29 100.0 36 TCCTTTTGAT ............................. AAACTGGTACTGCCCCAACTGAAAGCACGATGACAC 22374 29 100.0 37 ACGATGACAC ............................. AAGTTTTAAAAAGGATTTTGATTTTTTAAAAAATAGA 22440 29 100.0 39 AAAAAATAGA ............................. TCATAATCTACCTTCATTTGCACCGCTTGCTCGTCTTCT 22508 29 100.0 37 CTCGTCTTCT ............................. TCAATAACGATAGACATAAAAGGAGTTAGAGAAACGT 22574 29 100.0 36 AGAGAAACGT ............................. AACATCAAAAAAACTTGCTAATCTTTGTAATATTTC 22639 29 96.6 35 GTAATATTTC ......................G...... TTGCCATCACCGCTGGAGCTTCTGCCTCCCACGTA 22703 29 100.0 38 CTCCCACGTA ............................. CCTATTTAAACTTTCATCAGCTCTTATAGCAACACCAC 22770 29 100.0 36 GCAACACCAC ............................. ACCGGTTGCATCGGATACAAGAGCTTTCTGTTCCTC 22835 29 100.0 36 TCTGTTCCTC ............................. CTAACAGTGTAAAATTCCTTGAATCAGCAGTAAAAG 22900 29 100.0 39 GCAGTAAAAG ............................. TTGTAGTAGATTTGCAATTATGTTTAATATGCCTTGTCC 22968 29 100.0 37 TGCCTTGTCC ............................. TACTAAAGTTAGCAAATCAACACATAACAACAAAAAG 23034 29 100.0 37 CAACAAAAAG ............................. GAGCTTCTGAAGGGTATTTATTAGCATCACTCTTCTT 23100 29 100.0 38 CACTCTTCTT ............................. TTAAAAATGTCTGCTAATTTTTGTAATGTTTCGTAGTC 23167 29 100.0 38 TTTCGTAGTC ............................. ATCATAGTGTTTACGATAAATATGCTCCTGTTGTTGGA 23234 29 100.0 37 TGTTGTTGGA ............................. TCCGAGCTAAGTCACAAGGTTACAATACGCTATCGGA 23300 29 100.0 36 CGCTATCGGA ............................. ATCTTGTGTTCTTTCCTTTCCCCTAACAGTTTCGAA 23365 29 100.0 36 CAGTTTCGAA ............................. AGCTGCGGATGCAGCCGGAGACGAATTCCTCAACTC 23430 29 100.0 39 TCCTCAACTC ............................. GCTTAATACCACAAAAGGGACTATCTCTAATTACGAAAC 23498 29 100.0 37 ATTACGAAAC ............................. TGTTACAGCTGCGGCTGGAGTGCTTGTGAATAAGAAA 23564 29 100.0 35 GAATAAGAAA ............................. ACATCTGTTAGCAGTAAATGAAGACCTTAAAAAAG 23628 29 100.0 36 CTTAAAAAAG ............................. AAGCCCTACGGTATCCGTTTCAAATTCAACAATGCG 23693 29 100.0 36 CAACAATGCG ............................. GCAGTATTTACGCTTGCTGTGGTAGGTGCCGTAATT 23758 29 100.0 37 TGCCGTAATT ............................. CGTGTTAGGGCAGCCAGTAGACGAGCAACGCTGTTTG 23824 29 100.0 37 ACGCTGTTTG ............................. TTTCTTCATACTCATTTAAAAACAATTGTGCTTGCTT 23890 29 100.0 36 GTGCTTGCTT ............................. TTATTGGACAGTATATAAAGCAAAAAATGTTATTAA 23955 29 100.0 37 ATGTTATTAA ............................. GTCGAAAAACTAACAAGAGCACTTAACAAAATCAAAG 24021 29 100.0 37 AAAATCAAAG ............................. TCGTAACAGCCCGTCTGCTTTTTGTGTCGCCAATGTC 24087 29 100.0 37 CGCCAATGTC ............................. TTAGATATGTTGCTACGCTGTTTGGCAGTATATCATA 24153 29 100.0 36 GTATATCATA ............................. TTTTGCAGGGATACTTAAAAATCGAACTTGAACCTA 24218 29 100.0 37 CTTGAACCTA ............................. TAACCTTGTCGTTTTTAATGTCCTGCAGTTTGTCTTT 24284 29 100.0 35 GTTTGTCTTT ............................. CATGTTCTCCTTGCTCTGCTAATTGGTCTGCAAGC 24348 29 100.0 37 GTCTGCAAGC ............................. TTAAAACCTCTTCTTTTCTTTTTTGTTGATAATATTC 24414 29 100.0 36 GATAATATTC ............................. GCCTCAACAACAACACGAAAATATCCTTTTCTTATT 24479 29 100.0 41 TTTTCTTATT ............................. TCCTTTAAACCTGTGTATTGCATAAGTATAAACCTTTCCTG 24549 29 100.0 38 ACCTTTCCTG ............................. AGTAGAAGAATTAGAAGACCATCCATTAGTGAGTTTGC 24616 29 100.0 37 GTGAGTTTGC ............................. TTTTCCAGTTCTTCTATAACCTTACTTTCTACAAATC 24682 29 100.0 38 TCTACAAATC ............................. TGTTATTTCCTGTCCGCCGATTATCATTTTTCTTGCCA 24749 29 100.0 37 TTTCTTGCCA ............................. TCTTGATTTTTTAAGTCTTCAAGGACTTTCACATATT 24815 29 100.0 38 TTCACATATT ............................. TTAAAGATAGAGAAAATAGCTGAAATAACCGTGTAGGC 24882 29 100.0 37 CCGTGTAGGC ............................. ATGAAGTATACTGTTTTATCTTCTTTTGCTAAGTCGT 24948 29 100.0 35 GCTAAGTCGT ............................. CATCATGCCACCTCCGAAAAGCCGATTTCGTTTTT 25012 29 100.0 37 TTTCGTTTTT ............................. CACCACGAGCTATATATGCCGCAGCTGCTGCTGTACA 25078 29 100.0 35 CTGCTGTACA ............................. TCATGCGGGTGTATACTTAGAGTAGAATTTGAAAG 25142 29 100.0 36 AATTTGAAAG ............................. CTGGAAAGGTCTGGGTATCCCGCTTCGCAGAGCCTC 25207 29 100.0 36 GCAGAGCCTC ............................. TTAAGCAATTTTACAAAAATGTAAAATTCTTGCTTG 25272 29 100.0 36 TTCTTGCTTG ............................. CTGCGACTGTCACGGACGTTACATCTGAATATGTGA 25337 29 100.0 36 GAATATGTGA ............................. TCAGCGATAACAGTATTGTTTGTCGTACATTTCTTT 25402 29 100.0 36 ACATTTCTTT ............................. TAAAACATCTATAGATACATTAAAAAGAGCCGTATC 25467 29 100.0 36 GAGCCGTATC ............................. ATTTCTTTTGGACTCATCGAAAGCGGGCCTCATAAA 25532 29 100.0 36 GCCTCATAAA ............................. AAATCCTTTTTAGCTTCTATAGAAAATTGGGGTTCT 25597 29 100.0 TTGGGGTTCT ............................. CCACTTTAAT ========== ====== ====== ====== ========== ============================= 56 29 36 ATTTACATCCCTCATAGTTCAGATAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.97%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [871,209] Score: 0.18/0.18 # # Final direction: R [0.18,0.41 Confidence: MEDIUM] >NC_014209 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2216208 30 100.0 36 TGCTTTTACA .............................. CAATACTATCTACTATGGCTTGGACTTTGGTTACAA 2216274 30 100.0 38 TTGGTTACAA .............................. GAGGAATGGATTGGACCTTTCTCTAGAGAGCGGTTCAA 2216342 30 96.7 37 AGCGGTTCAA ....................A......... GTTTCTATGTCCTCGTCTCTATCACTTTCAAGCGCTG 2216409 30 96.7 36 TCAAGCGCTG ....................A......... AATGAGTTGCCATCGTACGGCATGTTTAAAAGCTAA 2216475 30 96.7 36 TAAAAGCTAA ....................A......... CATTTTGCAAACGAAAAAGATAAAAATCTTTAAAAA 2216541 30 96.7 39 TCTTTAAAAA ....................A......... CTGATGTATCCTGTTCTACATCTACAACAGGCTGAGGCA 2216610 30 96.7 37 GGCTGAGGCA ....................A......... TGGATGCGGGATAAGGGTGCGAGTAAACTTTTCTTTG 2216677 30 100.0 37 CTTTTCTTTG .............................. AAAGGTTCATCCTCAATAACTTCGGACAGCAAGTGCT 2216744 30 100.0 36 AGCAAGTGCT .............................. CGAGAATGGCAAGCGAAACAATCATAAATCAAAACC 2216810 30 100.0 38 AATCAAAACC .............................. TCGCTTCTGCTTCACTTTCTCACCACCTTTCTTTCAAA 2216878 30 100.0 35 TTCTTTCAAA .............................. TGTTTCTAAGGCTAGTAGAATGAATGTCTTATATT 2216943 30 100.0 36 GTCTTATATT .............................. CCCAACTGGTGTCGGGGTCGTCACTGATGTCAACTC 2217009 30 100.0 38 ATGTCAACTC .............................. TTTACACCGTGTTATCACCATTCAAGTGGGGAATATTG 2217077 30 100.0 36 GGGAATATTG .............................. GTTTACGCTTATTCCTGTCTGATTTGAAAGATCCAA 2217143 30 100.0 39 AAAGATCCAA .............................. GCAGATACTTGTATAGACTGATCCAAAAAAGGATTTGTA 2217212 30 100.0 37 AGGATTTGTA .............................. TAGAAACAAATGACTATTTTGTTGTCAGACAAGAACT 2217279 30 100.0 36 GACAAGAACT .............................. GGAGTTACAGCAATACACAATCCCATACGCATACTT 2217345 30 100.0 38 ACGCATACTT .............................. GCTGGCTTTCATTTCTAATCCTGAAGAGGAAAAAATGT 2217413 30 100.0 38 GAAAAAATGT .............................. GAAGGCAATTTATTTGTAGAGCCTTCTAAACTAACTTT 2217481 30 100.0 39 AACTAACTTT .............................. AGGCATAAAGAAAAAAGAAGTAGAGAAAGGAGATAATAA 2217550 30 100.0 36 GAGATAATAA .............................. AATCATGGCACGGCGTAAAGAGATCAACAGTGAGCT 2217616 30 100.0 35 ACAGTGAGCT .............................. AGGGTTTTATAAGTTTGGAATTAAGTTACATTAGG 2217681 30 100.0 TTACATTAGG .............................. CCATTATAAC ========== ====== ====== ====== ========== ============================== 23 30 36 GTTTCAATTCCTTATAGGTAGGCTAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.70,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [3032,184] Score: 0.18/0.18 # # Final direction: R [0.55,4.5 Confidence: HIGH] >NC_014210 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1595026 29 100.0 36 GTCGTTGACT ............................. CCCTCGGGGGCGCTCTCCAGCTTCGCCACGCGCGCG 1595091 29 100.0 33 CACGCGCGCG ............................. AAAACCCTTACTCAGCAGGGGTTTAGGCGTACA 1595153 29 100.0 32 TAGGCGTACA ............................. CAGCGTCGTCGACCCCAGGCTGACGGAGGTCT 1595214 29 100.0 32 ACGGAGGTCT ............................. CCTGCGGTTGCGGGGTTGTCCGCGAGCGGGAG 1595275 29 100.0 32 CGAGCGGGAG ............................. CCGGACCGCCACGTTATCCCGTGGGCCGAGCT 1595336 29 100.0 32 GGGCCGAGCT ............................. TGGCCGTTCGAGGGTGAGCGCGTTTACCTCGG 1595397 29 96.6 32 TTTACCTCGG ..............T.............. GCGGACCGGCCCACCCGGCTGGCGACCGTCGC 1595458 29 100.0 32 CGACCGTCGC ............................. GCCGTCGCCGCCTACGCGACCGCCCTCGGGCT 1595519 29 100.0 33 CCCTCGGGCT ............................. CATGCGGCAATCCACCCCACAGAGAAGCCCGTG 1595581 29 100.0 32 GAAGCCCGTG ............................. TCGATGACCGAGGTCGACGGCACCGGGTCGGA 1595642 29 96.6 CCGGGTCGGA ...........................T. CGAGCGCG ========== ====== ====== ====== ========== ============================= 11 29 32 GTGCTCCCCGCGCACGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [48.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [102,369] Score: 0.18/0.18 # # Final direction: F [0.68,0.55 Confidence: LOW] >NC_014210 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1587461 28 100.0 33 GTCGTTGACT ............................ CAAGGCCACCCACTGCTGGCAGGACCCGCGCAC 1587522 28 100.0 33 ACCCGCGCAC ............................ CCAGTCCAACAACGTCACGGACGCCCCGTACTT 1587583 28 100.0 33 CCCCGTACTT ............................ CGCCATCAACGCCGCCGCCCGCTCCGGTGGTAT 1587644 28 100.0 33 CCGGTGGTAT ............................ CAAGAAGTTGCGCGGGCGCTGGTCCGGACTGGT 1587705 28 100.0 33 CCGGACTGGT ............................ CCGGTGCGTGACCGGTGCGCCCAGATGGTCGAC 1587766 28 100.0 33 GATGGTCGAC ............................ CGGTCACCCTCGGCCCGGCATTACGGGCCATCC 1587827 28 100.0 33 CGGGCCATCC ............................ CCCAGGCCGCCGACCCTCGCGCGGCCCGCCACG 1587888 28 100.0 33 GCCCGCCACG ............................ TCACCACCCGAGACCGCTTGGCCATCGGGACCG 1587949 28 100.0 33 ATCGGGACCG ............................ GCGGGTCCGAGGTCGGCGGGCGGGCGGTCCTCG 1588010 28 96.4 33 GCGGTCCTCG ..................A......... CGGCACGGCACCCTGGACCGCCGCTGCGTCATC 1588071 28 100.0 33 CTGCGTCATC ............................ CGGGAAGCCCACCGGCACCGTCCGCAAGGTCGC 1588132 28 100.0 GCAAGGTCGC ............................ CTACTTCCCCA ========== ====== ====== ====== ========== ============================ 12 28 33 GTGCTCCCCGCGCACGCGGGGATGGTCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [55.0-15.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [302,268] Score: 0/0.18 # # Final direction: F [0.68,0.37 Confidence: LOW] >NC_014210 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1645359 30 100.0 31 GTTGTTGACT .............................. GGACGGAACGGGACCGCGACGGTCACCCTGG 1645420 30 100.0 31 GTCACCCTGG .............................. GGACGGAACGGGACCGCGACGGTCACCCTGG 1645481 30 96.7 31 GTCACCCTGG .............................T GGCCCTTGAACTTGACGGTGGTCACGGTGAC 1645542 30 100.0 TCACGGTGAC .............................. ACGGCGTCAC ========== ====== ====== ====== ========== ============================== 4 30 31 GTGCTCCCCGCGCACGCGGGGATGGCCCCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [50.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [168,55] Score: 0.18/0.18 # # Final direction: F [0.86,0.37 Confidence: MEDIUM] >NC_014210 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 1581787 25 100.0 36 GTGGTTGACT ......................... TCCCTCCGCGAACGAGATGCTCATGGGCGGCGGGAT 1581848 25 100.0 34 GCGGCGGGAT ......................... TCCCCTCCAAGCTCTGACCCAGCTCACGCCTGAA 1581907 25 100.0 36 CACGCCTGAA ......................... TCCCGACGACGGGGTCGCTGCTGCTGGCCAGGGTGG 1581968 25 100.0 36 GCCAGGGTGG ......................... TCCGATCCTCCTGCCGCCGCCCTGGGACGCGATGAG 1582029 25 100.0 36 ACGCGATGAG ......................... TCCCTCTTCTCGGGTCATTGCACTTTCTCCTGTTCT 1582090 25 100.0 36 CTCCTGTTCT ......................... TCCCAGGACGGAGCGCGGGTGCGCCTGGTGTGCGGG 1582151 25 100.0 GGTGTGCGGG ......................... CCCCCGATCG ========== ====== ====== ====== ========== ========================= 7 25 35 GTGCTCCCCGCGCACGCGGGGATGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-9.10,-9.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [50.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [102,70] Score: 0/0.18 # # Final direction: R [0.27,0.37 Confidence: LOW] >NC_014210 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1638344 29 100.0 32 GTCGTTGACT ............................. TACGCATCCACGGCAAGCCGCCGCTGCGCGAA 1638405 29 100.0 32 GCTGCGCGAA ............................. CGCCGTCGGTCTTCTCAGTCAGGTCCGCGTAG 1638466 29 100.0 31 GTCCGCGTAG ............................. AGCTGTCCGTGGCCAGTGTCGGTTCCGGGCG 1638526 29 100.0 32 GTTCCGGGCG ............................. TTCTTGGCGTTCATCGCTTCAGCTCCGGCAGG 1638587 29 100.0 32 CTCCGGCAGG ............................. AGGGTGAGCGGGTCCACGGCGCCGGTGACGAT 1638648 29 96.6 CGGTGACGAT .........................C... AGACCAGGCAC ========== ====== ====== ====== ========== ============================= 6 29 31 GTGCTCCCCGCGCACGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [51.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [172,24] Score: 0.18/0.18 # # Final direction: F [0.86,0.37 Confidence: MEDIUM] >NC_014210 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1662442 29 100.0 32 GTCATTGACT ............................. TCCACGTCCTGCCCCGGCAGCAAGAACTACTC 1662503 29 100.0 32 AGAACTACTC ............................. ACCAGAACGTGATCCGCGGCGGCGGCATCGTC 1662564 29 100.0 32 CGGCATCGTC ............................. CGCTCCAGCCCGAAACCCTGGCTCGCGCCGAC 1662625 29 100.0 32 TCGCGCCGAC ............................. TCACCGGTGGCCGACCCTTCCTGCACGCCATC 1662686 29 100.0 32 GCACGCCATC ............................. GGCGCCGACGGCGACGACTGGTCGCTCTCCAA 1662747 29 100.0 CGCTCTCCAA ............................. GTGGGTGGGGCCGGGCGGGGGAAGTGGAAGCG ========== ====== ====== ====== ========== ============================= 6 29 32 GTGCTCCCCGCGCACGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [51.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [366,143] Score: 0.18/0.18 # # Final direction: F [0.45,0.37 Confidence: LOW] >NC_014210 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 2013511 24 100.0 37 NNNNNNNNNN ........................ AACCGGGCAGCAGGTCCTCCAGGGAACCGCCGCCCCG 2013572 24 100.0 36 NNNNNNNNNN ........................ AACCGCACTCGCCTTCACTCTGTCGAACGACCGGTC 2013632 24 100.0 36 NNNNNNNNNN ........................ AACCGGTCTGATCACGTCTATGGTGGTCGGTCTTCG 2013692 24 100.0 37 NNNNNNNNNN ........................ AACCGTTCACCCCCCGGCGTCCGGTGACCCGTGCTCC 2013753 24 100.0 37 NNNNNNNNNN ........................ AACCGCGCACGTCGATGCTCCCCGAGACGCGGCGGGA 2013814 24 100.0 37 NNNNNNNNNN ........................ AACCGCCGGGGCGGGTCACGGACGTGTACCTGCTCCA 2013875 24 100.0 37 NNNNNNNNNN ........................ AACCGCCGGGGCGGGTCACGGACGTGTACCTGCTCCA 2013936 24 100.0 37 NNNNNNNNNN ........................ AACCGGCCATGCTCGCGTCCGAGACCCGCAAGATCCA 2013997 24 100.0 37 NNNNNNNNNN ........................ AACCGGTGACGTCGTCGGGCGTGTAGAGCTCGCGCTT 2014058 24 100.0 37 NNNNNNNNNN ........................ AACCGACTTGCCCCCCGTTGGCCCTACTGCTGTCTCT 2014119 24 100.0 37 NNNNNNNNNN ........................ AACCGGCGTTCATCAGCTGAGGCTCACCGGCGGCGGG 2014180 24 100.0 37 NNNNNNNNNN ........................ AACCGATCCCGGCCAGCCCCCTGCTCAGGTTGCCGCT 2014241 24 100.0 37 NNNNNNNNNN ........................ AACCGGGATTGACGGGGTTCGTAGCCGGTGACGATTC 2014302 24 100.0 37 NNNNNNNNNN ........................ AACCGGCTCAGCCCACTGAGGGCTGAGAGGTCACCGC 2014363 24 100.0 37 NNNNNNNNNN ........................ AACCGAGCATCATGCCCGTCTGTGCGGGGGAGCCCAC 2014424 24 100.0 37 NNNNNNNNNN ........................ AACCGCCGCAGGTCGAGAGGTACAGGTCAATCTCGGT 2014485 24 100.0 37 NNNNNNNNNN ........................ AACCGGGGCGACAGACCACCCGGCTACCAACCGTGTC 2014546 24 100.0 37 NNNNNNNNNN ........................ AACCGGAGGAGTTCGCCTACGCCATCGCTGGGTCGGG 2014607 24 100.0 37 NNNNNNNNNN ........................ AACCGTACGGCCAGCCGGTCGGTCCCTACCGCATCGC 2014668 24 100.0 37 NNNNNNNNNN ........................ GACCGTGCGCGGCCACGTACCCGGCGAGGTCGATCAC 2014729 24 100.0 37 NNNNNNNNNN ........................ GACCGGGATGACGCAAGCCGAGATCGTCCGGGCCACG 2014790 24 100.0 37 NNNNNNNNNN ........................ GACCGCCATCGACAGGGGCACACGCCCCGCCGACCTA 2014851 24 100.0 37 NNNNNNNNNN ........................ GACCGGCCATCGCGATCGCCGCTGTCCTGGGCATGCA 2014912 24 100.0 37 NNNNNNNNNN ........................ GACCGGCGACCCCCGCTGACGCTCCCATCGTCGTCTC 2014973 24 100.0 37 NNNNNNNNNN ........................ GACCGCCCCTCCAGCGCAAGCTGGGCGTGGACGCTGA 2015034 24 100.0 37 NNNNNNNNNN ........................ GACCGATGATGGTGGTGGCGTTGGACGCCGGGGCGGG 2015095 24 100.0 37 NNNNNNNNNN ........................ GACCGACATCGACCTCCTCACCGCAGAATCCCCCCAC 2015156 24 100.0 37 NNNNNNNNNN ........................ GACCGGCCGTCAGCGTGGAACTCAGAGGCGTATGGGA 2015217 24 100.0 37 NNNNNNNNNN ........................ AACCGCGGGCCATCTGCATGGCGGCCTCTTCGGCGAC 2015278 24 100.0 1 NNNNNNNNNN ........T.T.T........... NNNNNNNNNN ========== ====== ====== ====== ========== ======================== 30 24 36 GTGAGCCCCGCGCACGCGGGGATG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [3,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-5.80,-6.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [35.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [230,121] Score: 0/0.18 # # Final direction: F [1.05,0 Confidence: HIGH] >NC_014210 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================== ====== 5555561 26 96.2 35 CCTGCTCACT -......................... CACTCCTTGTCCTCTACCTGGATGCGCCCAGCGCT 5555622 26 100.0 35 GCCCAGCGCT .......................... CACGCCGTCACCAGGTTGCCCACGGTCGCGCCGAG 5555683 26 100.0 35 TCGCGCCGAG .......................... CACCAGCTGGCCGCCCTCCAGGCGCAGACGCAGGC 5555744 26 100.0 35 AGACGCAGGC .......................... CACCTGCCCACCCAGCTCACCGCGCCGGACGCGGA 5555805 26 100.0 35 CGGACGCGGA .......................... AACCAGCGCGCCAAGCTCATCAGTAACCCGTCGGC 5555866 26 100.0 ACCCGTCGGC .......................... AACAGCAACGGCTCACTCTCAGCGGACAAGTCATC ========== ====== ====== ====== ========== ========================== 6 26 35 GGGACCATCCCCGCGTGCGCGGGGAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [3,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.50,-2.70] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [35.0-35.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [71,320] Score: 0.18/0.18 # # Final direction: R [0.37,0.59 Confidence: LOW] >NC_014212 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1221053 29 100.0 32 AGAATCAAGA ............................. ATCAAACGCTCCTCGGCGAGGCTCAGGCGCAG 1221114 29 100.0 32 TCAGGCGCAG ............................. GAGATGGAATGACCAAGGAAAATATACCACAA 1221175 29 100.0 31 TATACCACAA ............................. TCTCTCCAGATCTTCGGCGCTTCCCACGCCA 1221235 29 100.0 32 TCCCACGCCA ............................. TACCACACCCCCCTCAGCCTGAACCGGTAGAC 1221296 29 100.0 33 ACCGGTAGAC ............................. CAAGCACGGAAGGCGAAGAATATATCTCGCCGC 1221358 29 100.0 32 ATCTCGCCGC ............................. CTGGTGGCGCGACTGGGGGGGTGACAAAACTA 1221419 29 100.0 32 GACAAAACTA ............................. CGGCTAGGGGGGGTAACGGTGTTCTCCCAGGC 1221480 29 100.0 32 TCTCCCAGGC ............................. AGCGTGGCAAAATTGACGTGCGGCGCTCTAAA 1221541 29 100.0 33 GCGCTCTAAA ............................. GAGGTCGCATATGGGAATCTTTAGAGGAATCAA 1221603 29 100.0 32 GAGGAATCAA ............................. AAATTCATTAGCAGTAGAACTTAATCCTGAAC 1221664 29 100.0 AATCCTGAAC ............................. CGCCGCCCCT ========== ====== ====== ====== ========== ============================= 11 29 32 GTATTCCCCGCACACGCGGGGATGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [22,485] Score: 0.18/0.18 # # Final direction: F [0.37,0.18 Confidence: MEDIUM] >NC_014212 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 2315230 35 100.0 40 GGGGTATGCT ................................... GGTCGTGTACGAAGAATAGCGTCGGGCCCCCCAGGAAAAA 2315305 35 100.0 36 CCAGGAAAAA ................................... CCGCCGGGCCCACTCCAAGGTGATCCGGGGGTATCC 2315376 35 100.0 42 GGGGGTATCC ................................... TTTCGAGCCAGGCAATACTTATTCATATAAAGATGCTCTATA 2315453 35 100.0 38 ATGCTCTATA ................................... ACCACCCAGGGCGAGGAGTCTTCCGCCAGTCGCTCCAG 2315526 35 100.0 38 GTCGCTCCAG ................................... AGTTATTATTCTGTTTCTGGTGGGGTAAGTAGCTTATC 2315599 35 100.0 43 GTAGCTTATC ................................... TAATGAACTCAATATTGAAACTATTTATCTAAATATTTCTCAA 2315677 35 100.0 41 TATTTCTCAA ................................... TGCAGCTATTGGCACATTTTCAATCTGTGCCTGAATAAAAG 2315753 35 100.0 40 TGAATAAAAG ................................... TCTTTTATATCTAGTTTTTTTAATTGTTCAGGAATTACAT 2315828 35 100.0 41 GGAATTACAT ................................... AAATAAACTTAGTACAAAGACAATTTTATTGTCTTATTTTT 2315904 35 100.0 42 TCTTATTTTT ................................... TCCTATAGCAAGTTTCATTTCTAGCAGGACGCGATCTCTATA 2315981 35 100.0 41 GATCTCTATA ................................... AATACTTCGTATCTACTGGTAACGTAATCAAAGAAAGACTT 2316057 35 100.0 AGAAAGACTT ................................... CCTCCCTGAT ========== ====== ====== ====== ========== =================================== 12 35 40 GTCGCAAACCAAAAGCCCCGTAAGGGGATTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [12,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.00,-7.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [48.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [475,73] Score: 0.18/0.18 # # Final direction: F [0.92,0.27 Confidence: MEDIUM] >NC_014212 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2317014 36 100.0 34 TTATTCTTTT .................................... GATCCCGGCGAGATTGACCCCTCAACAGTAGTAA 2317084 36 100.0 38 ACAGTAGTAA .................................... CAAATCCGGGTACGCTCACTACCCTCCCCCCCTCGTCC 2317158 36 97.2 CCCCTCGTCC ...................................T GGGCCACCA ========== ====== ====== ====== ========== ==================================== 3 36 36 GTCGCAAACCAAAAGCCCCGTAAGGGGATTGCAACA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [13,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.00,-7.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [31,536] Score: 0.18/0.18 # # Final direction: F [1.42,0.18 Confidence: HIGH] >NC_014213 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 127195 37 100.0 34 CTACGTGATC ..................................... TCGAGTACGCGGGGATCGTGACCAACATCGGCCC 127266 37 100.0 35 ACATCGGCCC ..................................... ATTGTTTTATACAGGCCAGTAGGGTAAACGCAAAG 127338 37 100.0 35 AAACGCAAAG ..................................... ACTAGTTTAAATACTTTCTTTAATGTTTAAAAATA 127410 37 100.0 35 TTTAAAAATA ..................................... TCAGCGGTTTGCAAACAGGCTGCGGTGTGGGTTCA 127482 37 100.0 TGTGGGTTCA ..................................... GGCCCCATT ========== ====== ====== ====== ========== ===================================== 5 37 34 GTTTCAATCCTCACTCGAGCTTTCGCCCGAGTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [7,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.10,-12.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [45,283] Score: 0.18/0.18 # # Final direction: R [0.27,5.42 Confidence: HIGH] >NC_014213 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 125440 37 100.0 34 AGCTGCCTTG ..................................... TTTCTAAGGCGCTCCTAGACAAGCCTCAATGTCT 125511 37 100.0 34 CTCAATGTCT ..................................... CTTTGGCCTAATCACACCATTGGAATATTTCAAG 125582 37 100.0 36 ATATTTCAAG ..................................... CAGAATTGTATTTAGGTATTCCTGTGTAGTCAGTCC 125655 37 100.0 34 TAGTCAGTCC ..................................... GGCAGTAAGTATTGACAAGCCGCTCGAGTTATGC 125726 37 100.0 CGAGTTATGC ..................................... CTATGTGGATA ========== ====== ====== ====== ========== ===================================== 5 37 34 GTTTCAATCCTCACTCGAGCTTTCGCCCGAGTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [7,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.10,-12.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [38.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [219,128] Score: 0/0.18 # # Final direction: R [0,5.51 Confidence: HIGH] >NC_014212 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 698282 35 100.0 42 GGGGTATGCT ................................... CCGCTTCGGCCAGGGCCAGGGCCGCCCCCGCGCCCATCACCA 698359 35 100.0 42 CCCATCACCA ................................... CAACCTGGATCGAGGAGCAGATCCAGCAACGAAATCCTGAAG 698436 35 100.0 42 AATCCTGAAG ................................... CGGCGGCCTCGAACTCGCCGTCGATGAAGAGCTCCGCAGTAA 698513 35 100.0 37 TCCGCAGTAA ................................... AAGTTCCTCCTTACGCATCAGCTGCAAAAAAAGCTGA 698585 35 100.0 41 AAAAAGCTGA ................................... GTCGTTGTAACCATCGATGAATGTGACACTTACAGTGTAGG 698661 35 100.0 39 ACAGTGTAGG ................................... TTTACGGACTCAGAAGTGAAGTCAAGGAAGTATATACCT 698735 35 100.0 41 GTATATACCT ................................... AAGGACTTGCTGAAGCGCCTTATGCCTAGTTACTAAGGTGT 698811 35 100.0 38 ACTAAGGTGT ................................... TTTCGTCATACTGTCATCTCCTTACCCTCGATTGTCGG 698884 35 100.0 41 CGATTGTCGG ................................... GCTCGGCGCAGGCGAGAATTATCTTTTCGTCGAAGTTTAGC 698960 35 100.0 42 GAAGTTTAGC ................................... CCGTACGCACAGTACTCGGCTATGCCGACGCCGAGCTCACAG 699037 35 97.1 40 GAGCTCACAG .........C......................... GCAAAGAAGGACGGAAGGGTTAGTCGAGGGCTACGAACCG 699112 35 100.0 CTACGAACCG ................................... CTTCTTGTTA ========== ====== ====== ====== ========== =================================== 12 35 40 GTCGCAAACAAAAAGCCCCGTAAGGGGATTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [13,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.00,-7.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [43.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [348,22] Score: 0.18/0.18 # # Final direction: F [1.33,0.27 Confidence: HIGH] >NC_014213 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 318307 36 100.0 36 NNNNNNNNNN CAGAT.CCTGA.CT...................... CCGGCTCATCAAATTTCCGACTCCGCTAGTTGGCCA 318379 36 100.0 35 NNNNNNNNNN .................................... CCGGCACTTCCTGAGGTTTCCGTGTGAGCTATTTT 318450 36 100.0 36 NNNNNNNNNN .................................... GCCCTACGAGACGGGCAAGCCCGCGCCCCAGGGCGA 318522 36 100.0 36 NNNNNNNNNN .................................... CCTGAGGAAACCAGACGGACGCAGCCTTTCAAGATT 318594 36 100.0 39 NNNNNNNNNN .................................... GGAGATCCCCGCTGCCTTGAGAGCGAGGGCGGTGTCGAG 318669 36 100.0 36 NNNNNNNNNN .................................... GCGCTTGAACCGGGCGAGCAGCTCCTCCAAGGTCGT 318741 36 100.0 37 NNNNNNNNNN .................................... CGTGAGCGGTCACCCGGATGCGCTCTCCCCGCTCAGC 318814 36 100.0 32 NNNNNNNNNN .................................... GGGAGCCCCGACGGCTCGGCGGCCACCCACCG 318882 36 100.0 37 NNNNNNNNNN .................................... CGTGAGCGGTCACCCGGATGCGCTCTCCCCGCTCAGC 318955 36 100.0 35 NNNNNNNNNN .................................... ACCACCACCGTGCCGCCCGCTTCCCATAGGTAGGC 319026 36 100.0 37 NNNNNNNNNN .................................... GGGGCGGCTCCGCCGCCAGGGAGGGGGCGATATGGCG 319099 36 100.0 36 NNNNNNNNNN .................................... TTATAAAACCATCCCTGGGCGTCTCTGGCACGCTTG 319171 36 100.0 36 NNNNNNNNNN .................................... TTGCCTCCCACCATGGGTGGTCTGCTGGAAGCACCG 319243 36 100.0 34 NNNNNNNNNN .................................... CTTCAGGATTTCGTGAAGGCCCTCGAGGGTTACG 319313 36 100.0 36 NNNNNNNNNN .................................... GGCAGGCAGAGGGTGAGCATGCGGCCTAGGTATCCC 319385 36 100.0 36 NNNNNNNNNN .................................... CGTTGAGGGCCCGCAAGGGCTGGCGGGGATGCATCT 319457 36 100.0 34 NNNNNNNNNN .................................... ACCTGTACTCGTTCGACTGTATTGCTCCCAGCTA 319527 36 100.0 36 NNNNNNNNNN .................................... TGAGCTGTACCAGGCGGCACGCCCAATGCTGGCGGT 319599 36 100.0 37 NNNNNNNNNN .................................... ACCTCGCCCGGTCTCCCCCTCTCGCTAGGGGCATTTT 319672 36 100.0 37 NNNNNNNNNN .................................... GCAAGTCCCATCGAACGGGGGGAGAAACTTCAACAAG 319745 36 100.0 39 NNNNNNNNNN .................................... TCCAATCGAGCCCCAGTCATCACCGGCACTCCCAACAAG 319820 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 22 36 36 GTTTCAATCTCCTACGGAGTATTTACAGCTTATACC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.60,-3.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [60.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [127,245] Score: 0/0.18 # # Final direction: R [0.27,5.28 Confidence: HIGH] >NC_014213 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 333510 36 100.0 33 GACCGGCGCC .................................... GTTGCGGTGAACATCGTGCCCGACTGGTGGAGG 333579 36 100.0 34 CTGGTGGAGG .................................... AGCAAACGCTCGGTGGCCTGGGTGGCCTCCGGCC 333649 36 100.0 35 GCCTCCGGCC .................................... ATTGCAGGAGATGGTGGGGCGATAGGGTGGAGCCT 333720 36 100.0 36 GGTGGAGCCT .................................... CCCCCATACTGGTGGATGGCCGCGTAGCGCACGTTG 333792 36 100.0 GCGCACGTTG .................................... GACTCCTGATC ========== ====== ====== ====== ========== ==================================== 5 36 34 GTTGCAAAAGCGACTAACCTCGTAGAGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.90,-3.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [83,166] Score: 0/0.18 # # Final direction: F [4.87,0 Confidence: HIGH] >NC_014215 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 441264 36 94.4 38 GCTGGCGCAA ................T............A...... ACGGCAACCGTCCCTCGCCGAGCCGGGGCCTTGGTGCG 441338 36 100.0 36 CCTTGGTGCG .................................... ACGCAGATTGGAGGAAGCAAATGGGCAAGCAAATGC 441410 36 97.2 38 AAGCAAATGC ..............................A..... CTTTGCCGCTGTCTGGCTCACGCTCAGCCCGAGCTCAC 441484 36 100.0 40 CCGAGCTCAC .................................... GGTCCGGCTCCTGCGCCGCTGGGAAGCCCTCGCCGCCCAC 441560 36 100.0 36 CGCCGCCCAC .................................... TCGACAACCGTGGTGTTCATGGGCATGCTCCTTTGA 441632 36 100.0 35 GCTCCTTTGA .................................... TCAAGACCGAACCGGATCACATGCGCACTGTCGCC 441703 36 100.0 37 CACTGTCGCC .................................... CTGTCGAGCAAATTCAGCTCACACAGGAGGAAGCCCA 441776 36 100.0 35 AGGAAGCCCA .................................... CCTACTATTGATGCCACAACGGCATTTCAGGAGAA 441847 36 100.0 36 TTCAGGAGAA .................................... CGCGTGCGCGGCCCGCTTGCGAGGAAATTTGTCGGG 441919 36 100.0 35 ATTTGTCGGG .................................... CGGCCCCGTCTGGTCGGACAGCCTTGAAGAGCCGG 441990 36 100.0 38 GAAGAGCCGG .................................... TTAGCGAGTTCTGCCCAGTCGTCTTCCCACACCTGCCC 442064 36 100.0 36 ACACCTGCCC .................................... GGGATGGTTGGCGATGGTCCGCCCGATCACATCGAC 442136 36 100.0 36 TCACATCGAC .................................... TGTCAGCTCAAAATCAGCCAGTCGGCTACAATACAT 442208 36 100.0 35 TACAATACAT .................................... TCAAAGAAATGGGGCTTGTTGCGCAGCTCGGTTCG 442279 36 100.0 36 GCTCGGTTCG .................................... CGGTGCAGGGTGCCCGATCCCGCTGTTACCGGACCC 442351 36 100.0 39 TACCGGACCC .................................... CGCTGAAGTGATGGCATTCATCAGAGGAGCGAGCTTCGG 442426 36 100.0 36 CGAGCTTCGG .................................... AATGTTGTGGTCATACCCGCGCCGGGTGCGGAACGT 442498 36 100.0 35 TGCGGAACGT .................................... TGCTAGAGAGGTTCTGGGGAACTATGGATCGTCGT 442569 36 100.0 36 GGATCGTCGT .................................... CTTGGGGGCCGGTCCCTGGAGTGGGTCAGTCTTCGT 442641 36 100.0 36 CAGTCTTCGT .................................... CTTATCGAACGGCGGAAACCAATCGGAACGGCCACC 442713 36 100.0 35 AACGGCCACC .................................... ACCGTTGGTCCTCAAGCCCGAATGTATTCAGGATG 442784 36 100.0 36 ATTCAGGATG .................................... CTGTGAGGCTCGTGCCGTCTGTTGTGTAGGGGTGGG 442856 36 100.0 36 TAGGGGTGGG .................................... CGGGCCGCCGTCGTCCTTGAACAGCCCGACCTTCGC 442928 36 100.0 37 CGACCTTCGC .................................... CTGAAGGTGTTGACGTTCCTACGAAGAAGGCTGTATA 443001 36 100.0 36 AGGCTGTATA .................................... CGTCTCGTGGCATGTACATTCTGCCACCTGCTCAAC 443073 36 100.0 38 CCTGCTCAAC .................................... GTGGGTGTTCTGGTGGTCGTGGGTGTCGGGTTCGGGGC 443147 36 100.0 37 GGTTCGGGGC .................................... CTCAGCGGCAGATGCTGGTCAGTGAGGTCCTCACGAG 443220 36 100.0 36 TCCTCACGAG .................................... GATCTTGTGGTCCAGGACCGTGCCTGTGGTCCTGTC 443292 36 100.0 35 TGGTCCTGTC .................................... ACACCGATCAGCGGACTGTCGGTGGGAATCGGATC 443363 36 100.0 37 GAATCGGATC .................................... CTGTGGCGCACGATCCCCACCAGCCAGGCATCCAACA 443436 36 100.0 39 GCATCCAACA .................................... CATTAATAGGCTATATCTTTTTAATTCCTAAAAATAAAG 443511 36 100.0 35 AAAAATAAAG .................................... AATATGCGGCGCACCATGCCTCCATGTCGGGAGGC 443582 36 100.0 36 GTCGGGAGGC .................................... AAGCGGAGCGACAAGAGCGAACAGGGAGATTTTTTG 443654 36 100.0 AGATTTTTTG .................................... GGCGGGCGTG ========== ====== ====== ====== ========== ==================================== 34 36 36 GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [10,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-11.10,-11.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [30.0-31.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [603,180] Score: 0.18/0.18 # # Final direction: R [0.55,0.78 Confidence: LOW] >NC_014216 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1780282 29 100.0 32 GGCCGCCGAT ............................. TAGTCGGAGCGGATCAGCGCCACCATGTCGGT 1780343 29 100.0 32 CCATGTCGGT ............................. TTTCACTGTGCCCCAGCAGCTCCTGAACCAGC 1780404 29 100.0 32 CTGAACCAGC ............................. TGGATAGAAAAACCAAAAGAATCGCCCGACCA 1780465 29 100.0 32 CGCCCGACCA ............................. CCGGGGTAAGTTGCGGTGCGGTTACCCCACAG 1780526 29 100.0 32 TACCCCACAG ............................. GGTCGGGGTCGGGGTGGCGGTGTCTTTAATTT 1780587 29 100.0 32 TCTTTAATTT ............................. ACCCTGCGTCGGGTCCAGAAGTATGCCACCAC 1780648 29 100.0 32 ATGCCACCAC ............................. GGCGCTGTAGCGGTGGGGTTTGCCGTCGCGGC 1780709 29 100.0 32 CCGTCGCGGC ............................. CAGTTACCCACCACAAACCCACCCACCTAACA 1780770 29 100.0 33 CCACCTAACA ............................. GGTTGCGGAACATCTTGAAGTGTTTCATGGCCT 1780832 29 100.0 32 TTCATGGCCT ............................. TGCGCCACCCATGATGCAATTGCGGCTCGCAC 1780893 29 100.0 32 CGGCTCGCAC ............................. CTGGACCTCCTTGCAGAAGCCGGAATCAAAGC 1780954 29 100.0 32 GAATCAAAGC ............................. TTCGCCCGCTGCACCGTGGTTTCCGGCTGGGC 1781015 29 100.0 32 CCGGCTGGGC ............................. GATGACCTGTCGGACATGCAGTTCGGCGAGGT 1781076 29 100.0 32 TCGGCGAGGT ............................. GGGATCAGCGCCAGCGGGCGTCCCTCGTCATC 1781137 29 100.0 32 CCTCGTCATC ............................. TCAGTTGCATGATGCTCCTCCCTGGTCATAGC 1781198 29 100.0 32 TGGTCATAGC ............................. TCCTGTATCGAACGCAACGCACCCCGCAGGTA 1781259 29 100.0 32 CCCGCAGGTA ............................. CGCTTGCGCCGCTCCTCGCTCATCTCAGAGAC 1781320 29 100.0 32 TCTCAGAGAC ............................. GCCTCCGTGTCCGGACCGAACGACAGGTTGAC 1781381 29 100.0 33 ACAGGTTGAC ............................. CCCGATGCTGGAGCGGGTACCACGTTCTCATCC 1781443 29 100.0 32 GTTCTCATCC ............................. TGGTTGGAGGGGCTGGAATGGTAGCCACTGAG 1781504 29 100.0 32 AGCCACTGAG ............................. GAAAGATACCTGACCACTGCTATTAAGCCTGC 1781565 29 100.0 32 TTAAGCCTGC ............................. GTAATACCGGGGTGTTGGCAGGTTTACATGGG 1781626 29 100.0 32 TTTACATGGG ............................. AAGTATGCCCTGCAAATGCAATGGCAAATGGC 1781687 29 100.0 32 GGCAAATGGC ............................. AATTATTGAAGAGGAGGTGTGGCCGTGAGATA 1781748 29 100.0 32 CCGTGAGATA ............................. CTCAACCAGGAGGCAACACGATGAACGATGCA 1781809 29 100.0 32 GAACGATGCA ............................. GCGGTGTCGGCTGGAAGTACACCATTGACCGG 1781870 29 100.0 32 CATTGACCGG ............................. CGGCTGCAGCGGTTCGACACTATTTATCTTTG 1781931 29 100.0 32 TTTATCTTTG ............................. GACCCTGACCGAATCACGCCAATATGCTGCCC 1781992 29 100.0 32 TATGCTGCCC ............................. GAGGCTGCCGAGGCTATGCACCAGCCCCGCGC 1782053 29 100.0 32 AGCCCCGCGC ............................. ACTCTACGAAAAAGAAGTTTCCGGTTTCGGTT 1782114 29 100.0 32 GGTTTCGGTT ............................. AAATAAACCAACCGGGGCCGGGCAACCGGCCC 1782175 29 100.0 32 CAACCGGCCC ............................. GACACCCGCATCCAAGACGGCAAGCTACATTT 1782236 29 100.0 32 AGCTACATTT ............................. AGCTCTGCCTCGAACGTCACGCCGGGGAAATG 1782297 29 100.0 32 CGGGGAAATG ............................. TCCTCGTGCGTTGCCCCCGCCTCGTCTCGTAC 1782358 29 100.0 33 CGTCTCGTAC ............................. TCGTCAGGATCATACAACGGGTCATCCGGGTGC 1782420 29 100.0 32 ATCCGGGTGC ............................. ACCTCGTACAAGTCACGTTGTCCGCCGAACGT 1782481 29 100.0 32 CGCCGAACGT ............................. CAGCGTCTTGATGCCCTTGTCTCGCAATTCGT 1782542 29 100.0 CGCAATTCGT ............................. TTCTGTTAAT ========== ====== ====== ====== ========== ============================= 38 29 32 CGGTTCATCCCCGCGAGTGCGGGGAACAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [5,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [33.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [644,140] Score: 0.18/0.18 # # Final direction: R [0.18,0.27 Confidence: LOW] >NC_014218 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1912139 29 100.0 32 NNNNNNNNNN ............................. GATAGCCGTTCAAGCCAGCCTTGACGTAATCG 1912200 29 100.0 32 NNNNNNNNNN ............................. TGCCAGATAAGATGTGTTCCACGGTAAATACT 1912261 29 100.0 32 NNNNNNNNNN ............................. CTTGGCGAAGTCTCGGGATTCAATAAGCTGCG 1912322 29 100.0 32 NNNNNNNNNN ............................. AGGTTGTCTCGTTATTTCAAGCGGTAACTTGC 1912383 29 100.0 32 NNNNNNNNNN ............................A GTGTTAGGCGTGCAGCGGGATAGGCTGCGCCG 1912444 29 100.0 32 NNNNNNNNNN ............................. GTCGGTCTGTCTGCTAACTCTTACAATGAGTT 1912505 29 100.0 32 NNNNNNNNNN ............................. AAGCCTGCCAAAACTCTATTTAACCGATATCC 1912566 29 100.0 32 NNNNNNNNNN ............................. TGTTGATGGTAGGCGCGTAGGGTCCAAATCGT 1912627 29 100.0 32 NNNNNNNNNN ............................. AAGCAAATACGTGGAAGAAACAAGCAAACGCG 1912688 29 100.0 32 NNNNNNNNNN ............................. CTCAAGAGCAAGAAGGTTCGAGTAATTGATGG 1912749 29 100.0 32 NNNNNNNNNN ............................. CAGCAAGCTTTTCAGAAACTAATCGAAAGAGG 1912810 29 100.0 32 NNNNNNNNNN ............................. GCGCCGGATCGCGCAGTGAAGAGAAGATAAGT 1912871 29 100.0 32 NNNNNNNNNN ............................. GCTTCAGAGACACTGTAACTATCAGATACACG 1912932 29 100.0 32 NNNNNNNNNN ............................. GATTGCACTACTCATCGGGGCCGCGGCGCTCG 1912993 29 100.0 32 NNNNNNNNNN ............................. ACGCAGCTAGTTATTAAGACGCTCGACGACGT 1913054 29 100.0 32 NNNNNNNNNN ............................. GCTTGAATGCTCGGGCTTCTGGTTTGCGTGAT 1913115 29 100.0 32 NNNNNNNNNN ............................. GTCTCGAAGCGCGGCGCGTCATTCACTAAGAA 1913176 29 100.0 32 NNNNNNNNNN ............................. CGCAGTATGCACACCACCGCCAGTTCCGCGGA 1913237 29 100.0 32 NNNNNNNNNN ............................. CAGTAGTGTAGAGTGTTCGCGGCTCCAAGTTA 1913298 29 100.0 32 NNNNNNNNNN ............................. GTTGTTTCTGAAGCGGGTCTATACCAGGTCAT 1913359 29 100.0 33 NNNNNNNNNN ............................. CCTGAGGTTGCCCGGCACACACCCAGACGGATT 1913421 29 100.0 32 NNNNNNNNNN ............................. TGTTCACACGCTTAGGCGCGCCAGGCGGAATT 1913482 29 100.0 32 NNNNNNNNNN ............................. ATTGCTTCAAATTCGGCGGTAGTGTACGTGTA 1913543 29 100.0 32 NNNNNNNNNN ............................. CACGATTATTGGTGGCGGGCTACCCAAACCAC 1913604 29 100.0 32 NNNNNNNNNN ............................. ACCGTTTGGAAGCGGTTCGTAAAAAAGAGCAG 1913665 29 100.0 32 NNNNNNNNNN ............................. GTGGAATGAGCAGTTGTTTCGTCCGTATGGAT 1913726 29 100.0 32 NNNNNNNNNN ............................. TATGTGGGTAATGTGCATGTGGTCGTCGTCGG 1913787 29 100.0 32 NNNNNNNNNN ............................. AGGTTTTCGTCGTCAGGTAGATCAGGGACTGC 1913848 29 100.0 33 NNNNNNNNNN ............................. GGGTAGCTCCAGCCTTGGAAATTGGTTAAACCG 1913910 29 100.0 32 NNNNNNNNNN ............................. GTGTACCAATGGAATCCAATCAAGATTCGCCA 1913971 29 100.0 32 NNNNNNNNNN ............................. TGGAGTTGGTTGGTAGGTAGGTCATGATTTGG 1914032 29 100.0 32 NNNNNNNNNN ............................A CTGAGTTGATGACGCAGATCGGTTCCTTAGAG 1914093 29 100.0 32 NNNNNNNNNN ............................. TTCGCCGGAACCACCAACACCGAATCAAGCAG 1914154 29 100.0 32 NNNNNNNNNN ............................. GGCTACCGAATCAGCAAATAACACTTTCGGCG 1914215 29 100.0 32 NNNNNNNNNN ............................T ATTTCTATTTCGAATCTAGTAGGGGATTGCTT 1914276 29 100.0 32 NNNNNNNNNN ............................. AGCGCATAATCAGCGCATACTGTGCGGGCGTG 1914337 29 100.0 32 NNNNNNNNNN ............................T AGGTTCATCATTATTACCACGTTCCATATCCC 1914398 29 100.0 32 NNNNNNNNNN ............................. CAGCGTGCGAGGAGGAGCGTGCGGACCGGTTG 1914459 29 100.0 32 NNNNNNNNNN ............................. CCGCGCTGTACCATCGTCGACTACTTCGGTAC 1914520 29 100.0 32 NNNNNNNNNN ............................. CTCTACCATTGGTGGTGTCACCCACCATAATT 1914581 29 100.0 32 NNNNNNNNNN ............................. TCTCGCACGTTTGAATAATTAGCGTTATCTAA 1914642 29 100.0 32 NNNNNNNNNN ............................. ATTAGTCAATGTGAACAGCTCAGTTAGTCAAA 1914703 29 100.0 32 NNNNNNNNNN ............................. GAAGCATGGGCATTCTCAGAAGTCCAAGGAAA 1914764 29 100.0 32 NNNNNNNNNN ............................. TTTTCCTCGCTCTCGTCGGAGCGCTTGTCGCT 1914825 29 100.0 32 NNNNNNNNNN ............................. TGCTGGTTCAGCGCCTAGGATTCCGCTTGCCA 1914886 29 100.0 32 NNNNNNNNNN ............................. GGGATATGATGTCTACTGCTTCAAAGCGCACA 1914947 29 100.0 32 NNNNNNNNNN ............................. TTCTGACCTACTGGCAGTTCAACAATTGCTCG 1915008 29 100.0 32 NNNNNNNNNN ............................. GCCGATGATAGCTTTAATCCAATCATTAACCG 1915069 29 100.0 32 NNNNNNNNNN ............................. GATAACTGGCTCTGCTAAAAGCAATGTTATCG 1915130 29 100.0 32 NNNNNNNNNN ............................. AGCAACGATTGCTAGCCCGATAGTGCTTTGCG 1915191 29 100.0 32 NNNNNNNNNN ............................. GGTTCGCCCGGTAAGCAAGGCCCGACTGGTCC 1915252 29 100.0 32 NNNNNNNNNN ............................. AGGTGCGCCTTTACCTTGGAACACCACACGCA 1915313 29 100.0 32 NNNNNNNNNN ............................. TATCGGAACACTCGCCACACCGGTCATGGTGA 1915374 29 100.0 32 NNNNNNNNNN ............................. ACGAGTCGATTAAGACCACCGTGGATACGTAC 1915435 29 100.0 32 NNNNNNNNNN ............................. TCCCATTTACGCAAAGTCTTTTCACCTACGCC 1915496 29 100.0 32 NNNNNNNNNN ............................T GGACAATCCAGGAAAAAAAGACGTATCATTCG 1915557 29 100.0 32 NNNNNNNNNN ............................. CCGCATCGATTATGCCAGGCGCCTCGATGCTC 1915618 29 100.0 32 NNNNNNNNNN ............................. ATTTCGCACATGTCAGCGATGAGATGGAGCCG 1915679 29 100.0 32 NNNNNNNNNN ............................. AGCTGTCCACGTCCCGCACAGATAGATCGGCA 1915740 29 100.0 32 NNNNNNNNNN ............................. AGCTGTCCACGTCCCGCACAGATAGATCGGCA 1915801 29 100.0 32 NNNNNNNNNN ............................. GCTTCATTCTTCATTACCTGGCTTAAAGGAAC 1915862 29 100.0 32 NNNNNNNNNN ............................. GGTAGTGGCTCTTTTTTTGCATTGCAGCCCCA 1915923 29 100.0 32 NNNNNNNNNN ............................. GAGTTTGTTAGACCGTCCTCAGACACATATCC 1915984 29 100.0 32 NNNNNNNNNN ............................. TTTCTCATCCACAGTGTCAATAAAATAAGGGA 1916045 29 100.0 32 NNNNNNNNNN ............................. GTACACGCGACGAAAACGTTCTTACCCTTCGA 1916106 29 100.0 32 NNNNNNNNNN ............................. GGTTTCGCGCCAGTCATTTTTGAAGCCTTGAT 1916167 29 100.0 32 NNNNNNNNNN ............................. GACGCTTTTACTGAAGTAGAGCAAAAAGCGAA 1916228 29 100.0 32 NNNNNNNNNN ............................. AGATTTCGTTTCACGCGAACCTCAATATCCGA 1916289 29 100.0 32 NNNNNNNNNN ............................. ATCGCAAAGAATGTCGCGGAACTTGGTGTCCG 1916350 29 100.0 32 NNNNNNNNNN ............................. CGCTTAGTTGTTCTTTCTCTCGAAACTCACAG 1916411 29 100.0 32 NNNNNNNNNN ............................. CATAGGCCAGACTCACCGCACTCTTTCCGATT 1916472 29 100.0 1 NNNNNNNNNN ..A.......................... NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 72 29 32 CTCTTCCCCGCACACGCGGGGGTATTTCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.40] Score: 0/0.37 # Array degeneracy analysis suggestion: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [50.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [22,316] Score: 0.18/0.18 # # Final direction: R [0.41,0.82 Confidence: MEDIUM] >NC_014216 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1785014 28 100.0 32 NNNNNNNNNN A..GAC...................... AAGTCCACCGGCTTTGCCGATATGGACCTGTG 1785074 28 100.0 32 NNNNNNNNNN ............................ ATTTCACCATCATTCGACGGCGGAATTCGTCC 1785134 28 100.0 32 NNNNNNNNNN ............................ GGAACGTGCTTTTTTTGCCACCGGCGGTTCAT 1785194 28 100.0 32 NNNNNNNNNN ............................ TCTTGCCGGAAGCAACTCCGATTGACCCACCA 1785254 28 100.0 32 NNNNNNNNNN ............................ TGATGGCCCGGACATCGGCGACATTGAAGGAT 1785314 28 100.0 32 NNNNNNNNNN ............................ ATCCGATCTGGAGCAGTCCCTAAACTCGATCT 1785374 28 100.0 32 NNNNNNNNNN ............................ AAAAACCGTTGCATGGCCTTCTGACTGGGTAT 1785434 28 100.0 32 NNNNNNNNNN ............................ CCGAAACTTTGCCCCTGTGGTAAGCCGGTCAA 1785494 28 100.0 32 NNNNNNNNNN ............................ AATACTGTGAGCCCTGCAAAGACATCCTTTTT 1785554 28 100.0 32 NNNNNNNNNN ............................ AAACCCCGCCGCAAGCGGGCCGGCACTGTTGA 1785614 28 100.0 32 NNNNNNNNNN ............................ ACATTATGACCGGACCGGGCCGGGGTTCTGTT 1785674 28 100.0 32 NNNNNNNNNN ............................ GATAATTACCGCCATGGTTTACCCCCGTTTGC 1785734 28 100.0 33 NNNNNNNNNN ............................ ATCGGGGTGGTCCCGGTAATACGCTTCAATCAA 1785795 28 100.0 32 NNNNNNNNNN ............................ GTGGCCCTTTGCTTCAGCCGGACAACCATCTT 1785855 28 100.0 32 NNNNNNNNNN ............................ TTGTACTTACTTTCTTTCTTCTTTGCCATTTT 1785915 28 100.0 32 NNNNNNNNNN ............................ GAAGCGCAGCGACTTGCGGAACTCTTCGACCT 1785975 28 100.0 32 NNNNNNNNNN ............................ CCTGTGTTGCGTTTTTATACCTTACCTAGTAG 1786035 28 100.0 32 NNNNNNNNNN ............................ TTGATGAGTGTAAACCTTATTAATTTCGTCTT 1786095 28 100.0 33 NNNNNNNNNN ............................ ATACCGGAAACCGCAATGGAGTATTTAATGTTA 1786156 28 100.0 32 NNNNNNNNNN ............................ AACGACGCCTTCAACATGGTCAGCCTGACCAA 1786216 28 100.0 33 NNNNNNNNNN ............................ GCAGATCACCCCGGCCATGGTCGATGCCTACAA 1786277 28 100.0 32 NNNNNNNNNN ............................ TTTTCCTTGGGACATCCCTTACAGCGACGGAT 1786337 28 100.0 32 NNNNNNNNNN ............................ CACAAACCTCCCCGCGATATAGCATTCCGGGC 1786397 28 100.0 32 NNNNNNNNNN ............................ CTTTGCCCGGCTAGCGCCCAGCCACTCAAGCT 1786457 28 100.0 32 NNNNNNNNNN ............................ ACGGTGAAAATCTTGTCGCCGGTTTCGTTAAT 1786517 28 100.0 32 NNNNNNNNNN ............................ TTACGTCGGCCATTGTATACTTTGCCTTTTTT 1786577 28 100.0 32 NNNNNNNNNN ............................ TCCGCTGCGCGCGATTTGATCTCAAGCCTCAT 1786637 28 100.0 32 NNNNNNNNNN ............................ AAGACACCCTGGTATGTGATGCGTGATCTGTT 1786697 28 100.0 32 NNNNNNNNNN ............................ TACTTGTCACTCCCCACCACATAACCGCAAAT 1786757 28 100.0 32 NNNNNNNNNN ............................ CGCCCTCTCTGTCACCCCTGAATGCCCAAGCA 1786817 28 100.0 32 NNNNNNNNNN ............................ GGAAAGAGATGGACAACAGTTAACTATTGAGA 1786877 28 100.0 32 NNNNNNNNNN ............................ ATATTCAGCCCGTGAAATAGGCGAGGAAACCT 1786937 28 100.0 32 NNNNNNNNNN ............................ TTAAACAACTTGGCAGAATTGAAAAGCTTTTT 1786997 28 100.0 32 NNNNNNNNNN ............................ ATAAGAGGTTTTGATTGGTGTTGGGGGTAATG 1787057 28 100.0 32 NNNNNNNNNN ............................ TCGGATATCACCGAGACGCAGACCACGATCCA 1787117 28 100.0 32 NNNNNNNNNN ............................ TCCTCCGCCAATCGTGATCCGAACCCCGGTCA 1787177 28 100.0 32 NNNNNNNNNN ............................ GGTGCGATGGAAGTTTACCCGGTTGAATACGA 1787237 28 100.0 32 NNNNNNNNNN ............................ GTAACTCTTGACGCACTCCTTGCATTTGTTAA 1787297 28 100.0 32 NNNNNNNNNN ............................ GCCATTTGTTTGTGGGCATAAAAGTCCGACAG 1787357 28 100.0 32 NNNNNNNNNN ............................ TTGCCATCTTATCTTTCAGCACCCGATCACCA 1787417 28 100.0 32 NNNNNNNNNN ............................ GTTGAAAATAACCCTCATCGTTTCACCTCGAT 1787477 28 100.0 32 NNNNNNNNNN ............................ TATGGATCAAATGTCGCCTGGGTGATGGGTAT 1787537 28 100.0 32 NNNNNNNNNN ............................ TAGTAGCCCTTTACCGGCTATATACTGCAATA 1787597 28 100.0 32 NNNNNNNNNN ............................ AAATGTCGACTGGTTGATGGAGATGGGTTGGT 1787657 28 100.0 32 NNNNNNNNNN ............................ TAACCGATTTTGTTTTGACGCCAAAACCTAAA 1787717 28 100.0 32 NNNNNNNNNN ............................ TTCCCGGAGAGCCCGGTCAACCCGGCCTTCCT 1787777 28 100.0 32 NNNNNNNNNN ............................ ACGGCGGGAGCCGCGCCGTTTGTTGTCATGAT 1787837 28 100.0 32 NNNNNNNNNN ............................ GGCAGGATCATCATTGTCTGCACCCCTTGTTT 1787897 28 100.0 32 NNNNNNNNNN ............................ ATCACCATCCCATTAGGGCCGGTGCGGGGGAA 1787957 28 100.0 32 NNNNNNNNNN ............................ GGTGACAACATCCTCGCCGCCCCTGTCTGGTC 1788017 28 100.0 32 NNNNNNNNNN ............................ GCTTTTGGACAAACTTTTTGGTTCCAGCCAGC 1788077 28 100.0 32 NNNNNNNNNN ............................ CTGGTAAGCTTTCACAGCCTTTTTCAGGATCA 1788137 28 100.0 33 NNNNNNNNNN ............................ GACGGGGCAGGCCGGCGAGAATCCAGAGGCGCA 1788198 28 100.0 32 NNNNNNNNNN ............................ GATCATGGTCCGCATGCTGCTGCCCTGGATCA 1788258 28 100.0 32 NNNNNNNNNN ............................ CCTTGCAGCGCCGCCCATAGCCGCTGGCCGTA 1788318 28 100.0 32 NNNNNNNNNN ............................ CAGAAAATGCTCGGACGGGTGCTCCCGCCAGA 1788378 28 100.0 33 NNNNNNNNNN ............................ GTTGTTATCAGCCGGGCTGGTGCGGATGGTCCA 1788439 28 100.0 33 NNNNNNNNNN ............................ GCCCTTGGCTGCCATTTGGTGCCGTCAAGCTGG 1788500 28 100.0 32 NNNNNNNNNN ............................ CAAATGACACCTTCACAAATTGCCAGGATATT 1788560 28 100.0 32 NNNNNNNNNN ............................ TGTTCTCAACATCCCACCATCCGTCGCTGTAA 1788620 28 100.0 33 NNNNNNNNNN ............................ TTTCAGTGCCTCGTTGGCGTCTTTGTGGCCCAG 1788681 28 100.0 32 NNNNNNNNNN ............................ CCTGCGTAGCAGTTTCCGGGGCCGGAACTCAA 1788741 28 100.0 32 NNNNNNNNNN ............................ GAAATCAGAATTGAGGAAGACGGGACGGTGAA 1788801 28 100.0 32 NNNNNNNNNN ............................ TCGAAACTGACACATTGCTTGACCTGGGGGAT 1788861 28 100.0 32 NNNNNNNNNN ............................ ACCTGGGCAGAGATCCCCGCCAGCCATTACAA 1788921 28 100.0 32 NNNNNNNNNN ............................ GCGAAGTCGGCCCATATCCCGGACTTGTTGCC 1788981 28 100.0 32 NNNNNNNNNN ............................ CAGACGGTGAAACGGTGTCGCGAGTTGAAAGC 1789041 28 100.0 32 NNNNNNNNNN ............................ CTCCCCCTGGTCCATGGCGTCAAGGGTGAACT 1789101 28 100.0 32 NNNNNNNNNN ............................ CGGGATGATGAAGAATACCGGGGCGCGATTGA 1789161 28 100.0 32 NNNNNNNNNN ............................ CCTGGCAAGGTAACCATATCGCAAACGGTTCT 1789221 28 100.0 32 NNNNNNNNNN ............................ TATTGTAATCGGCCCCAATGAAGTGCCCCTTT 1789281 28 100.0 33 NNNNNNNNNN ............................ GCAGAATCTCGAATGATCCGCCATGACTTTGTT 1789342 28 100.0 32 NNNNNNNNNN ............................ GAACCACTGCTTTCCGGCCTGCGGCTGGTGCT 1789402 28 100.0 34 NNNNNNNNNN ............................ GTATCTTTTCCCTGACGGGCACCAGTCCGGCCAG 1789464 28 100.0 32 NNNNNNNNNN ............................ TACCGAGTAGTTCCACTGATGTCCGTCGCCCT 1789524 28 100.0 33 NNNNNNNNNN ............................ AAGGCAAAACCGTGAGTTGATTGCCCTGCACCT 1789585 28 100.0 32 NNNNNNNNNN ............................ AACGCAAGTCAGCGTTACGGTCCCCCCAGAGT 1789645 28 100.0 33 NNNNNNNNNN ............................ TTGCAGGAGTCATCGTTCCGCATGGTGCCGGGT 1789706 28 100.0 32 NNNNNNNNNN ............................ CATTTTGTTGATGTATGGTGCCAAGCCTTCAA 1789766 28 100.0 32 NNNNNNNNNN ............................ TCCACCGGGCCGCTGGAACCCGCCCCGTTTTA 1789826 28 100.0 32 NNNNNNNNNN ............................ GTTGCAGGTGCCGTCCGGCTCTTTGTCTCTTT 1789886 28 100.0 33 NNNNNNNNNN ............................ GCCCGAGTACCCGCGCTGATTCCCGTCCGCTGA 1789947 28 100.0 32 NNNNNNNNNN ............................ GTTGCACGGCAAGGTTAGAGTGGCAGAGTTCA 1790007 28 100.0 32 NNNNNNNNNN ............................ GCGTTTGGCATTGACCGGGCCATTATCACCGA 1790067 28 100.0 32 NNNNNNNNNN ............................ CTTCTGCGCCAGTCTGACAAGGAAATGGTTCA 1790127 28 100.0 32 NNNNNNNNNN ............................ ATACCAGCAGTGATGAATTGATATGGTTTATG 1790187 28 100.0 32 NNNNNNNNNN ............................ CTGGCCGCCATCGGCGTTGGTGCCGCGATTTT 1790247 28 100.0 32 NNNNNNNNNN ............................ ATAAGCACTTCCCCTTCGGAGATTCACCGACT 1790307 28 100.0 32 NNNNNNNNNN ............................ GATACAGGGGCGCTTATGGTGGTCGGGGGTCT 1790367 28 100.0 32 NNNNNNNNNN ............................ TCCATGTCATCGGCATTTGTCGGCTGCACACT 1790427 28 100.0 32 NNNNNNNNNN ............................ CAAATGGTGGATGAAATGATTGAATACCTTCA 1790487 28 100.0 32 NNNNNNNNNN ............................ GCCGGGGATCAGTCGGGTGCGCAGGTCGTCCT 1790547 28 100.0 32 NNNNNNNNNN ............................ CTTTGGACGGAGCCGGTTCGGCGGTTGTTTTA 1790607 28 100.0 32 NNNNNNNNNN ............................ CGGTGGAGCAACAAAGCGAAGCGTCGGGCCTT 1790667 28 100.0 32 NNNNNNNNNN ............................ TTGCTCGGCCATGATGTACCCGGCGAGAGCAT 1790727 28 100.0 32 NNNNNNNNNN ............................ GACGGCGGGGATGCTGTTGTGTTCCCGTATCT 1790787 28 100.0 32 NNNNNNNNNN ............................ GTTGTAGGGTCGTTGGGGTCGAAATTACCCTT 1790847 28 100.0 33 NNNNNNNNNN ............................ ACAAGTTTTTTGTCATTATTCGCCTCTTGCTTT 1790908 28 100.0 32 NNNNNNNNNN ............................ CTCCAGCCAGGCCAGGGAGTACTGATAGTACT 1790968 28 100.0 32 NNNNNNNNNN ............................ TGATCCCTGACGATGTGATTTCCTTTTCTGAT 1791028 28 100.0 32 NNNNNNNNNN ............................ CGGCAGATACGGGCCGCAACGGAGGAGTAGGA 1791088 28 100.0 32 NNNNNNNNNN ............................ GTGGTAGCCCACATCATTCCACCCCCTGGCCA 1791148 28 100.0 32 NNNNNNNNNN ............................ TTCACGATATTCATTTTATTTGCCTCATTATT 1791208 28 100.0 32 NNNNNNNNNN ............................ ATCTCCTTGTTCAATCAATCCAACTGCGTCGT 1791268 28 100.0 32 NNNNNNNNNN ............................ ACAGCCTCCCCCGGCATTCCCGGCAGTTGTCA 1791328 28 100.0 32 NNNNNNNNNN ............................ CTTCACCCGGTGGCTCGATCGGAGTTGCTTCC 1791388 28 100.0 32 NNNNNNNNNN ............................ CATACACTACTCCGGGCGATGGGGGTGGTAAT 1791448 28 100.0 32 NNNNNNNNNN ............................ CCTGTAAGCCAAGGTACTTGGCCACTTGTTGC 1791508 28 100.0 33 NNNNNNNNNN ............................ GTTGCGGAATTCTCCGACCTTGTATCCCAAATT 1791569 28 100.0 32 NNNNNNNNNN ............................ GTCGGGAAGGTTGATGGCGTCGATGTTGATCA 1791629 28 100.0 32 NNNNNNNNNN ............................ CTTTATAGCGTGTCGTCTATCCGGGCGGCTAT 1791689 28 100.0 32 NNNNNNNNNN ............................ TTTGCCCGGTACTTGCTGGCCTGGCGCTTGGT 1791749 28 100.0 32 NNNNNNNNNN ............................ TCGGGGTCACTTTTGAGCCTGCCCCCGGTCAA 1791809 28 100.0 32 NNNNNNNNNN ............................ GGTTGAGGTTGCTCATGCTTGGACCTGCTCCT 1791869 28 100.0 32 NNNNNNNNNN ............................ GATTTCGCCAACCTGCACGATGCCTGGCTGAA 1791929 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 116 28 32 TTTCTGAGCTGCCTGTGCGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [50.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [56,129] Score: 0.18/0.18 # # Final direction: R [0,1.6 Confidence: HIGH] >NC_014220 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1385517 30 100.0 36 NNNNNNNNNN A...T..ATGG...G.AACA.......... TAACGCCATTTGGTAACTTCCCCGAGTGACATTTCC 1385583 30 100.0 37 NNNNNNNNNN .............................. TTACCTCTAAATCGCAACCGCGGAACGAGAACGACAT 1385650 30 100.0 37 NNNNNNNNNN .............................. TCCAAGAGCCTTGTAGCGAAGCAGTGACGCAGTACGT 1385717 30 100.0 35 NNNNNNNNNN ......G....................... GAAACCTGGCGGGCCAAAGATAAGTTTGAGATATA 1385782 30 100.0 38 NNNNNNNNNN .............................. CCTTGTGTCCAGGTATAGGACCAGGACCAGCGTTCCTG 1385850 30 100.0 36 NNNNNNNNNN .............................. GCCGCACTTTCCCTGAGCTGCAGCGCAGTTTAGTTA 1385916 30 100.0 37 NNNNNNNNNN .............................. CGGAGCGGAAAAGCACCATCAAGGAACAACTGTTAAA 1385983 30 100.0 37 NNNNNNNNNN .............................. GCAGTTAAACCGCGAGCACCGCCAGGAGATGCTGACA 1386050 30 100.0 37 NNNNNNNNNN .............................. CCCCATCCTCTCGAAACCCTGCCTGTCCCACTCCAAA 1386117 30 100.0 36 NNNNNNNNNN .............................. TTTTCCTTTACCCACTTAATATCTTCAATAGCCCAG 1386183 30 100.0 37 NNNNNNNNNN .............................. GCGTACCCTCCGCGAGCGGTCGAAACTTCGCTTTGTA 1386250 30 100.0 35 NNNNNNNNNN .............................. ACAAAAGGCTCGCAATTCCGAACCTGCTCTGCCAC 1386315 30 100.0 37 NNNNNNNNNN .............................. TTATTAGTCCTGCGGCCATAGTAGTGTATCCCCTTAT 1386382 30 100.0 36 NNNNNNNNNN .............................. TGGCCCCGCTCGTCTGTGCCCCACTCCCAATTCCTC 1386448 30 100.0 36 NNNNNNNNNN .............................. CTGCCTTCCGGCAAAGCCTCCAATAGCTCAAAAATA 1386514 30 100.0 36 NNNNNNNNNN .............................. CGGAGATAAGGTCCGGCTAAAAATGCGGAGTTATAC 1386580 30 100.0 35 NNNNNNNNNN .............................. GGCATCGCGGACCATGGTAACGGTTCTTAGGCAAC 1386645 30 100.0 36 NNNNNNNNNN .............................. CCCAGCAATCCATACTAGAAAATCAGCATTGTTACT 1386711 30 100.0 36 NNNNNNNNNN .............................. ATAAATGCTACCTACCGGGAAAGTCTGGAGGATATG 1386777 30 100.0 37 NNNNNNNNNN .............................. GTTACCTTGGTGGGGACCGTCCAGGCCGGGCGCACTC 1386844 30 100.0 37 NNNNNNNNNN .............................. CCGAGGTTGGCAGTTACATCATTAAAACTATGAACGC 1386911 30 100.0 35 NNNNNNNNNN .............................. CCAGGAAACTGTTACCAGTTTCCTGGGTAGCCTCA 1386976 30 100.0 36 NNNNNNNNNN .............................. TCATCCCAATCATGGATGAACAGATTATCTTCAGCC 1387042 30 100.0 36 NNNNNNNNNN .............................. CCAGTCCCGCTCAGTCATCTTTATTACCTTCTTCCA 1387108 30 100.0 35 NNNNNNNNNN .............................. TACCGACGCGGCAAATGAGTTGGGCGTTCCGTATA 1387173 30 100.0 36 NNNNNNNNNN .............................. TGCAAAGAAGAAGGTGTAAGTACCAGGGAGGCTGCT 1387239 30 100.0 35 NNNNNNNNNN .............................. GGAGCAGGAACTTGACAGAGCCAGCCCGCAGATAG 1387304 30 100.0 38 NNNNNNNNNN .............................. TTGAGGTCAAGACCACAAGAAGCATAACCGAGCTCTAT 1387372 30 100.0 36 NNNNNNNNNN .............................. TGTCTCAGGAGGAATTGGACGTATACGCAGGTCTCA 1387438 30 100.0 35 NNNNNNNNNN .............................. AAAAGCTCGGCCATGAACAGCGCCCCTTATGCTAG 1387503 30 100.0 38 NNNNNNNNNN .............................. CCTGTACGCCCAAATGCGTTTTCTCTCGCCCAAGATTC 1387571 30 100.0 32 NNNNNNNNNN .............................. CGTGAACATCCTCATTACGGAGGATACGATGG 1387633 30 100.0 35 NNNNNNNNNN .............................. CGTCTATCTTAGCCTCCTGCCGGGCTAACGCCACC 1387698 30 100.0 37 NNNNNNNNNN .............................. TCAAGAAAAAAAATAAAAAAGCCGGGGCACTAAGCCC 1387765 30 100.0 36 NNNNNNNNNN .............................. GCTGTCCCGGCAATATTCTTTCCAGTTTTCAGCCCA 1387831 30 100.0 35 NNNNNNNNNN .............................. TTAACGGAGACCTTCTTTTGCTCGTTATTGACCCT 1387896 30 100.0 36 NNNNNNNNNN .............................. CAAGATTAAAACTTTTCTCTCATGGTGGGAGAAAAC 1387962 30 100.0 37 NNNNNNNNNN .............................. TATTCCAGCTTTTTTCGGGGCTCCAGCAGGTGGTATG 1388029 30 100.0 36 NNNNNNNNNN .............................. GGCGTAACTGTCCGAGATATAGCGCCGCTCCAAAAG 1388095 30 100.0 36 NNNNNNNNNN .............................. CTAGACTGCTAGACTGCTAGACTGGGAGTCTGAAAG 1388161 30 100.0 37 NNNNNNNNNN .............................. AGTGGGCCATATCCGGTAGCCACAGAAGTCAATCCCC 1388228 30 100.0 36 NNNNNNNNNN .............................. AGATTTTGCCAAGGCTTCGTCTTGCGAAGCCCGGCG 1388294 30 100.0 36 NNNNNNNNNN .............................. AGACTTCACGCTCCTTGCATCCTTTTCCTACCACCC 1388360 30 100.0 36 NNNNNNNNNN .............................. TGGAAATGAGCAAAGACGATCGTCTAATGAAAACGG 1388426 30 100.0 42 NNNNNNNNNN .............................. CTAATATTTCCTCTAACTCCTCGCTGTTAATTATCTTCCCCG 1388498 30 100.0 37 NNNNNNNNNN .............................. CAAACCCAGCATTCTCCAGCCACTCCCGGACGGGGTC 1388565 30 100.0 39 NNNNNNNNNN .............................. ATGAAAACTATAAAGCTGGTATGATAGGCTCTCAACAAT 1388634 30 100.0 41 NNNNNNNNNN .............................. CATATTCGTGCCCCCAGTCTAGGTCGCTAGGACGGTACCAT 1388705 30 100.0 37 NNNNNNNNNN .............................. CTCGATATAACTAGACAAAAAGCTAAGCCCCAAGTCG 1388772 30 100.0 36 NNNNNNNNNN .............................. CCCGGCCTGTGTGGCACAGATTCCCTGGCAGGGCTC 1388838 30 100.0 37 NNNNNNNNNN .............................. AAATTCTTTCGGGATACCCTAATTCCCAGTCTGGACC 1388905 30 100.0 36 NNNNNNNNNN .............................. CCAGGCGCAACCTGGGGGTTCCCAAGGCGGTCAGCA 1388971 30 100.0 36 NNNNNNNNNN .............................. CGTCGTCCACCTTGACCACGCAGCGAGGCTTGCCGT 1389037 30 100.0 34 NNNNNNNNNN .............................. GTAGTTAAGGCCGACATCAATGCCGACCTGACCC 1389101 30 100.0 42 NNNNNNNNNN .............................. GCCCGGCAGGTAGACATCTACCTGTTTCCCCTCCTGCGCGGC 1389173 30 100.0 37 NNNNNNNNNN .............................. GTCCGGCTCGGAGGAGAACCGGACTACATACATCCAC 1389240 30 100.0 37 NNNNNNNNNN .............................. TTTGTACTGTGCAACTATTTTCTTATATGCCAGGTAG 1389307 30 100.0 37 NNNNNNNNNN .............................. GCAACACCAGCCCATCTTGCACCCGAACCAAGTCAAA 1389374 30 100.0 38 NNNNNNNNNN .............................. TGCAACAATCCCTGCTACTTCTTCAGCACTTAAGTTTA 1389442 30 100.0 37 NNNNNNNNNN .............................. CTCTGCCTGAAACAAGCGAGAAGGTAGCTGCTTACGG 1389509 30 100.0 36 NNNNNNNNNN .............................. ATAAATATATAAAAAGGAATGTATCTAGCTAGGTTA 1389575 30 100.0 36 NNNNNNNNNN .............................. CGAACACATAAAGCCCCAGAGCCGTTAAAACAGCCA 1389641 30 100.0 36 NNNNNNNNNN .............................. ATGGAGCATGTCCAGCGCTGGATTTATGAGAAAGCA 1389707 30 100.0 35 NNNNNNNNNN .............................. CTTCCCACTGGGACTATTCTCTTGAAAAAAAGATA 1389772 30 100.0 36 NNNNNNNNNN .............................. CGAACACCGGATAAGGGATCTCCTGAGTTTGTTTTA 1389838 30 100.0 37 NNNNNNNNNN .............................. CAGGTAACACTGGCCACGGGCCGGCAACCTTTCCCCA 1389905 30 100.0 36 NNNNNNNNNN .............................. TCATAGGTTTTACGGCCGTTTTCATACAGCGCTCCG 1389971 30 100.0 37 NNNNNNNNNN .............................. CACAAAAGAAACTGCGTCAAAGAGCTTCTGTCTGAAG 1390038 30 100.0 35 NNNNNNNNNN .............................. TTAGTTTATGGGCTTTACATTCTGGACAGTTGAAT 1390103 30 100.0 37 NNNNNNNNNN .............................. TTTGCCGCGGGGGAGGGCGGGCTGGTAAGGCACACTC 1390170 30 100.0 35 NNNNNNNNNN .............................. CCAGGGCCAGCTCGTTCCAGCGCAGGAAGTAGCGC 1390235 30 100.0 35 NNNNNNNNNN .............................. CTTGTTGACTAGAGCCTGCACGTCGTCCACCGCTG 1390300 30 100.0 37 NNNNNNNNNN .............................. GCCCTGGGCCGTCCTCGGGTCGCCGTCGGACAGGACC 1390367 30 100.0 37 NNNNNNNNNN .............................. CCCCTGGAACTCCTTCGCCAGTTTCATGGTATTCTCC 1390434 30 100.0 35 NNNNNNNNNN .............................. GCTTTCAGAGCCGCGATGATGGCCTTGACGTTGCG 1390499 30 100.0 42 NNNNNNNNNN .............................. CCCCTGGCGGCACAGACCGCCACCCTGGTGGAAGCGAAGTTC 1390571 30 100.0 37 NNNNNNNNNN .............................. GCCGGGGCCATGGTCTGCCTGAACGCCAGCGGCTACG 1390638 30 100.0 35 NNNNNNNNNN .............................. ATACGAGAAAGCAAGGAAGTTACCTTGCTTGCCGC 1390703 30 100.0 41 NNNNNNNNNN .............................. ACGTCCTCCTTGACGAGGACATACTTCTATACAGTCCAGAG 1390774 30 100.0 37 NNNNNNNNNN .............................. CCAGAATTGAATCCCTCAGTAAGCAAAAAGAACAGCC 1390841 30 100.0 36 NNNNNNNNNN .............................. CCGGCTTCGATGTGGCGGAAGTCCGCTATCTTGAAG 1390907 30 100.0 37 NNNNNNNNNN .............................. ATGACAGCTGGTGCCGTCCCAGCGACCTGGACTGGAA 1390974 30 100.0 36 NNNNNNNNNN .............................. AAATTCGTCCCAGCAAAAAAAAAGAACGCCGAAAAT 1391040 30 100.0 36 NNNNNNNNNN .............................. CTTTCCTGAGCTGGTTTAGGAAGGGTGAAGCAGGCG 1391106 30 100.0 37 NNNNNNNNNN .............................. GATGAATTTCAGACCAATTTATGTTTGCTTGGACAAA 1391173 30 100.0 37 NNNNNNNNNN .............................. CCAAGAAGGGCAGGGGCAGTCATACATGCGAGGTGTG 1391240 30 100.0 35 NNNNNNNNNN .............................. TCCGCCGCAGTATTTTACTTTCCCACCACTGCCAT 1391305 30 100.0 37 NNNNNNNNNN .............................. GAAGACATGAAAAGAGAAGCGGTGCAAATAGCAGCTA 1391372 30 100.0 36 NNNNNNNNNN .............................. TATCTAGTAGACACATACTATCAAATCCAAGATTAC 1391438 30 100.0 37 NNNNNNNNNN .............................. GCAGTACCACGCGCACGATTAATTTCCATTGTGCCGT 1391505 30 100.0 36 NNNNNNNNNN .............................. CGTATCCACTTCTGTAGAGGAGGCGACTTTTGATGC 1391571 30 100.0 35 NNNNNNNNNN .............................. CGATATATTGATGAAGGTAAAGCGCAACTAGTTAA 1391636 30 100.0 36 NNNNNNNNNN .............................. ACACTTACTACCGTCTTTTTCGTGATCCTCGCTTCC 1391702 30 100.0 37 NNNNNNNNNN .............................. CAAAGATGGAGCTTCCCAGTATTCTTTGACCACAGCG 1391769 30 100.0 35 NNNNNNNNNN .............................. AGCGGTGAACCGCGAAATTAGATACAGTATCGACT 1391834 30 100.0 36 NNNNNNNNNN .............................. TTGGAAGATAGGCCAGTACTACAGAGGACTGGTTGA 1391900 30 100.0 36 NNNNNNNNNN .............................. GCAGAATGGCACTGTATGACGCTTACAGTGCCGTAT 1391966 30 100.0 36 NNNNNNNNNN .............................. GCGCCGCGCTTCTGATATCATAATAACACGCCGCGT 1392032 30 100.0 37 NNNNNNNNNN .............................. TTACCAATTTCTGGTTGGCATGATTCTTGCTACTAAC 1392099 30 100.0 34 NNNNNNNNNN .............................. TTGATCGGGTGTGCCTCCGGGCGTTGCTTTGTAC 1392163 30 100.0 36 NNNNNNNNNN .............................. TATTGTGGCAGGAGTGGGCTATAAATGACTTTACAG 1392229 30 100.0 39 NNNNNNNNNN .............................. GGAGTTGCCAGCGGAGAAACAAGGCAAACTCCATCGAGT 1392298 30 100.0 36 NNNNNNNNNN .............................. GAGTATAGATATTTTTGATGCGATTGTCGACTTCTA 1392364 30 100.0 35 NNNNNNNNNN .............................. TCCGTCCATTCCCTATCCCAGCATGGTGGCGACGT 1392429 30 100.0 35 NNNNNNNNNN .............................. GCAGGGCGGCAGTAGCGGTCACTCCCTGATTGTGG 1392494 30 100.0 37 NNNNNNNNNN .............................. TTTCGTGCGGCTAATGCCCATTTTTGGTAATCACCAG 1392561 30 100.0 36 NNNNNNNNNN .............................. CTGAAAGAGGGGAGGAAGCTCCCCCAAATAACAAAA 1392627 30 100.0 36 NNNNNNNNNN .............................. CTGGCGTCCTCTTCATCTGTGAAGATGAGTAGCTCA 1392693 30 100.0 36 NNNNNNNNNN .............................. CCTTGCCGGGGGCTTAAAGCCCCTCACGCATACACG 1392759 30 100.0 36 NNNNNNNNNN .............................. TTCCCACTCTCTCAGCCCAGGTAAATAGGAATTCAC 1392825 30 100.0 37 NNNNNNNNNN .............................. CTGAAGCTGGGAAATTCTACCTTCTGGATGGTTTTCT 1392892 30 100.0 36 NNNNNNNNNN .............................. TTTGATGCAATAGACGACACCCTTTCCTTCTTGTGC 1392958 30 100.0 37 NNNNNNNNNN .............................. CCACGAGCACACGCACGAAGTCGGAGCTAGGACGTTA 1393025 30 100.0 35 NNNNNNNNNN .............................. TCGATATCCGCAACTACGGGCTCATTCTTCTTATG 1393090 30 100.0 36 NNNNNNNNNN .............................. GTCGAGGAAAGTGAAATTAGAAATCGAAATTGACGA 1393156 30 100.0 39 NNNNNNNNNN .............................. CTGCTGAGATACCCAGAGCTATTGCCAGGTGAGTCTTGC 1393225 30 100.0 38 NNNNNNNNNN .............................. CCAAAAGAGCCGTGGTCATTTTTTCATCACCGAAGATT 1393293 30 100.0 37 NNNNNNNNNN .............................. CAAGAAGCATAACCGAGCTATATTGGGATGCCCGTTA 1393360 30 100.0 37 NNNNNNNNNN .............................. CCTCATACCCGCATAGGCGGAAGCATTCGCATACCCA 1393427 30 100.0 36 NNNNNNNNNN .............................. TTATTTGCTAGCAGGAAAGGAGGGAAACCAATCACA 1393493 30 100.0 36 NNNNNNNNNN .............................. CTCATCTCCTCGCTCGCTCCCGTGACCTTTTTAATG 1393559 30 100.0 36 NNNNNNNNNN .............................. TATTCCTTCGCCGCCGGATTACAGAGACTATGCTTA 1393625 30 100.0 36 NNNNNNNNNN .............................. CTGCGCTTTTTGCTTACACGATTATGAATGTGAACC 1393691 30 100.0 36 NNNNNNNNNN .............................. TGCGAAAGGGAGGACTAAAGGTGGAAGTCAGACTTC 1393757 30 100.0 37 NNNNNNNNNN .............................. CAAGAAGTTCCGGGAGGTGCTATGAATGGGCGAAGAA 1393824 30 100.0 35 NNNNNNNNNN .............................. TCTTTCGGCCAACTGTGTAACTTCGGAGAAAATAT 1393889 30 100.0 36 NNNNNNNNNN .............................. ACTCATACGCGGTCCTCATGGATGACGACCTGCGAG 1393955 30 100.0 35 NNNNNNNNNN .............................. TCTGTTGGGCCTTATCTTTACTTCATATCCGATGA 1394020 30 100.0 35 NNNNNNNNNN .............................. ACCTCGTTCACATACCCTTTGATGTGTACCCGGCA 1394085 30 100.0 36 NNNNNNNNNN .............................. GGCTGTAATCTTTGTTTGGCCTGGTCATAATCCTCC 1394151 30 100.0 36 NNNNNNNNNN .............................. CCATTAGCCCCGCAAATCCCTTTGGTTTTTCCTCAA 1394217 30 100.0 36 NNNNNNNNNN .............................. ATGGCAATCCTAGCTTATTCGGCGTACAGAGCAGAA 1394283 30 100.0 35 NNNNNNNNNN .............................. TTAAAGGGGGTCGCGATGCTTCTCCTGTCGTGCTC 1394348 30 100.0 36 NNNNNNNNNN .............................. AAAAAGACGGCTACTGCCTTGAGTGTTATATAGAGT 1394414 30 100.0 36 NNNNNNNNNN .............................. TCTGGCTATGGGGGAACGTCCTGGGCCCGAATAGCA 1394480 30 100.0 37 NNNNNNNNNN .............................. CTTGTTCGAACACCTCCTGGATGGTCTTTTTGGTGTG 1394547 30 100.0 37 NNNNNNNNNN .............................. AAAAGCCAACCTTGAGTTCGTAAAGATACTGAAGCTC 1394614 30 100.0 35 NNNNNNNNNN .............................. CCGGGCAACTGCTGTTTTTAGATTGTCGTATACGA 1394679 30 100.0 36 NNNNNNNNNN .............................. GCTTCCTGTTCTTTGCGGTTCTTCCCCTGCAACACC 1394745 30 100.0 37 NNNNNNNNNN .............................. GCCCAATACAATCCACAGCAGTTTCTCCCTGTGCTGG 1394812 30 100.0 36 NNNNNNNNNN .............................. GCCGTAGAATAAGCGATATTCTAAAACTGCAAGTCA 1394878 30 100.0 36 NNNNNNNNNN .............................. AAAAATGCAGAGGTTGAGAGGGAAGCCGAAAAGACA 1394944 30 100.0 36 NNNNNNNNNN .............................. TTCTACAGTTTGCTCGATATGCAGACGATCATAAAA 1395010 30 100.0 36 NNNNNNNNNN .............................. CCCCTCCTCTCCTCTCCTCCTGCTCACTCGCTCGAG 1395076 30 100.0 36 NNNNNNNNNN .............................. CCCCTCCTCTCCTCTCCTCCTGTCCATTCGAGATAG 1395142 30 100.0 36 NNNNNNNNNN .............................. TGGCTATCAGGTTTATTACCGATGTATGCGAAAGGG 1395208 30 100.0 36 NNNNNNNNNN .............................. TAAACTAAGCGAACAAAGCACGTTAAGCCAATCAGA 1395274 30 100.0 37 NNNNNNNNNN .............................. CTGGCAGCCTACTATGCCGGATTTGACAGCATTAGAA 1395341 30 100.0 36 NNNNNNNNNN .............................. CTCCTAACCTAGGCCAGAGAGAGGAGACTGAAAGAG 1395407 30 100.0 37 NNNNNNNNNN .............................. TAAGATCCGTTACCATGGTCCACGGTGCCGGTCTCCG 1395474 30 100.0 43 NNNNNNNNNN .............................. CATCAAGTCACACGAGCCGGGCTTGCTCTGTTGCGCGTCCTTG 1395547 30 100.0 36 NNNNNNNNNN .............................. TGCCCAGGCTTTAATTCGGAGGTGGGAAGAAACAAA 1395613 30 100.0 37 NNNNNNNNNN .............................. AGAATCAAATTCTCAGGTCAAAAAGTCTGTGTCATTT 1395680 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 154 30 36 GTTTCAATCCCACTATGGTTCGATTGGATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.80,-1.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [55.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [265,215] Score: 0/0.18 # # Final direction: R [0.27,5.28 Confidence: HIGH] >NC_014221 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 112115 36 100.0 38 AGAGGGTAGA .................................... TTATGAGGCGTTCCAAAGCCCTTTTCACCTCCTGGCTG 112189 36 100.0 42 CTCCTGGCTG .................................... ACGGAAACAGGGCCGACCCGTCTCCCCTTCAGAATAAGTATA 112267 36 100.0 39 AATAAGTATA .................................... CGGCACCACCACCCAGTGGGTCTCGTCGGCGTACCAGAT 112342 36 100.0 38 CGTACCAGAT .................................... CCTCTGACGGAGAGCCGTAGAGCCTCCCCGTCATTTTT 112416 36 100.0 CGTCATTTTT .................................... TAGTGGTGCA ========== ====== ====== ====== ========== ==================================== 5 36 39 GTTGCAAAAGGGTCTGCCCCGTCAGGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [9,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.00,-7.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [250,424] Score: 0/0.18 # # Final direction: F [5.24,0 Confidence: HIGH] >NC_014220 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1597645 32 100.0 35 GACCCGAGTC ................................ GCACTGCAAGCGGTAATGCAACAGATTACAAGGCT 1597712 32 100.0 35 TTACAAGGCT ................................ TCAGGATGGGTAGCTGTGTAGATTACCAAGCTGTT 1597779 32 100.0 34 CCAAGCTGTT ................................ GCCGACATCAATTGTTGCTATAGGCGAGATGGAT 1597845 32 100.0 33 CGAGATGGAT ................................ GCCAGCGATAGGGCATATAAAGCTGAAAGACGT 1597910 32 100.0 35 TGAAAGACGT ................................ CTAGCGAGATATAATTTAAGAACCGTCAAAAACAC 1597977 32 100.0 35 TCAAAAACAC ................................ GGAGCTCCGCGGCTGGAGCGCAAAATGTTTCACGT 1598044 32 100.0 35 TGTTTCACGT ................................ GAGGCGGAGTCGGGGTCGATTACGGGTTGGCTCGG 1598111 32 100.0 34 GTTGGCTCGG ................................ TGCTAAGCCCCAAGTCGAGGCCCTCGACCAAGAC 1598177 32 100.0 34 CGACCAAGAC ................................ ACTGCTGGGGCGTGGCGTTCGACATAGCGGTGAT 1598243 32 100.0 35 TAGCGGTGAT ................................ CCTTCCTTGCTTCCCCGGGGAAGAACCCCTCAAAA 1598310 32 100.0 38 CCCCTCAAAA ................................ AAACAACGTGGGAATGTAACTGGATTGATATTTTACCT 1598380 32 100.0 34 TATTTTACCT ................................ CCTCCTGCCAGGGAGAAGGCGCTTTGGCTGTGAT 1598446 32 100.0 33 TGGCTGTGAT ................................ CCGTATAAGGCTTTATGGGCTACCTTGCGAAAA 1598511 32 100.0 33 CTTGCGAAAA ................................ GGATTGTGGACTATAATAAAAAGGGAGGAAAAG 1598576 32 100.0 35 GGAGGAAAAG ................................ ACGGTGCTGGCCGACTTTATCATGCTGGGCACACA 1598643 32 100.0 34 TGGGCACACA ................................ AGTTGAATTAAAGGCTTCCAATAATAAACCAACT 1598709 32 100.0 34 TAAACCAACT ................................ TTTCCCAGAGCACGAGAGTGCACAGGTCAATGTC 1598775 32 100.0 34 GGTCAATGTC ................................ TGCGGAGGGTTATTACCCGGCCATCCTGCAGCTT 1598841 32 100.0 33 CCTGCAGCTT ................................ ACAACCTGGCTCAACCAGGGACGATGGGATGAT 1598906 32 100.0 35 ATGGGATGAT ................................ TACCGCCTCCACCGGACTTTATAGCAGAGCATCAT 1598973 32 100.0 36 AGAGCATCAT ................................ ATCTATGCCACCTCCTTAGTGCACCACAAGGGTCCC 1599041 32 100.0 33 CAAGGGTCCC ................................ CGGATTGTCATGCTCCATGTCCGGGAGGAAAGA 1599106 32 100.0 34 GGAGGAAAGA ................................ CCACTTCAACGCGTGGGTTTTTAGGGTCAACCGC 1599172 32 100.0 36 GGTCAACCGC ................................ GCCGTTTGTCTTCCTGCCTGGGCGTTTGTATTAGCT 1599240 32 100.0 36 TGTATTAGCT ................................ TCCAGCAGCTCCCACTCATAAATCCTATGGCCCCAG 1599308 32 100.0 34 ATGGCCCCAG ................................ TCTAATTTCCGGCGATGTTCCTGATAAACCGCCA 1599374 32 100.0 33 TAAACCGCCA ................................ TTGCATTGCAAATTGTCCAATCCGCCCTCAAGT 1599439 32 100.0 34 GCCCTCAAGT ................................ CTTGACTTAGCCCGCTTAATAACCGCCCTCAATC 1599505 32 100.0 33 GCCCTCAATC ................................ CTCCTCGACGTGGCTGATGACTATAACCTTCGC 1599570 32 100.0 35 TAACCTTCGC ................................ CCGACGCGGCCGGCTTTATTCTTGCTGACACTCTG 1599637 32 100.0 35 TGACACTCTG ................................ ACGGCCCTGTTACACACAAAGATAGACTACTACAA 1599704 32 100.0 36 ACTACTACAA ................................ CAGGCCAAGCCAGTACATGAGCATAAAGGCAACACG 1599772 32 100.0 37 AGGCAACACG ................................ TTTCAATTTCTTGAACTTTTAGGGTTAAAAAAATTAT 1599841 32 100.0 33 AAAAAATTAT ................................ CTGGGACGACCTGGGCAAGGAAAGTTTTAGGAC 1599906 32 100.0 35 GTTTTAGGAC ................................ TCAGGTGATACCGTTATGACAGGTTTTTCAAGTTT 1599973 32 100.0 34 TTTCAAGTTT ................................ AATATCAAGCTGGGGCTATGGGGTTAAACTTTCA 1600039 32 100.0 33 TAAACTTTCA ................................ TTCAAAATGTTAGATTGGGGATGCACACCACAA 1600104 32 100.0 35 CACACCACAA ................................ CAACTGCAATTTGATATAACCCTTCAGGAACAATT 1600171 32 100.0 33 AGGAACAATT ................................ AATTAAATTGAAGCAATATAAAGATTATGGAAC 1600236 32 100.0 34 ATTATGGAAC ................................ ATACCTGTTCCTCGGTCATATCGCCCGCCTCGAA 1600302 32 100.0 35 CCGCCTCGAA ................................ CACGCCTCCACCTCAACATAATTAGCTGGAAGCCC 1600369 32 100.0 35 CTGGAAGCCC ................................ CCAGCCCGCAACGATTTTCAATTCAGGGGATTCTA 1600436 32 100.0 34 GGGGATTCTA ................................ AACCAGATTCCATATTCTACACCATGGGAAAGGT 1600502 32 100.0 34 TGGGAAAGGT ................................ CTGGTTTGGAGAATATGAAAGGTGCGGTGAAAGC 1600568 32 100.0 35 CGGTGAAAGC ................................ TTGGAACGAGATTGAGGAAGAATTCCAAGAAAAGA 1600635 32 100.0 34 CAAGAAAAGA ................................ AGAAATCTTTGCGAGCAGAAGCTGAGCTAATACA 1600701 32 100.0 35 AGCTAATACA ................................ GATGCCGTTGGTTGATATAGGTTTATCCCCAGGTG 1600768 32 100.0 34 TCCCCAGGTG ................................ CCATAGATAGTTCCTTTTTCAACTTCTGCTTCAG 1600834 32 100.0 34 TCTGCTTCAG ................................ TCCAAGGTTCCGTTGTAAGGACGAAGAAGGCCAG 1600900 32 100.0 35 AGAAGGCCAG ................................ GTATACGAGGCTACTGCGTACGCCCCACTAGACCC 1600967 32 100.0 34 CACTAGACCC ................................ TTCTACATATTTATACAAACCGCAAGAAACGCAA 1601033 32 100.0 34 AGAAACGCAA ................................ TTATACCACGAGGGGGTCCGTGTATCCCCTCAAT 1601099 32 100.0 33 TCCCCTCAAT ................................ GTTCTTCTTTCTTTCTTCGTTGACCAAGTTCCC 1601164 32 100.0 35 CCAAGTTCCC ................................ TATTAACTTTCCTCTCTGATATTATTATACAATTT 1601231 32 100.0 34 TATACAATTT ................................ AAACTACCACGATAGAACCGCACAGGGGAATAAA 1601297 32 100.0 34 GGGGAATAAA ................................ TTGGCTAAAGTCGGTGTTACCGCTACTGAAGCAA 1601363 32 100.0 34 ACTGAAGCAA ................................ ACGACGTACCTGTAGCTACAGATACAGCCATATC 1601429 32 100.0 34 CAGCCATATC ................................ CAAAACAACTTTGTATTGGAGCTTTAATGAGAAT 1601495 32 100.0 34 TAATGAGAAT ................................ TAAACAATATATTGATTGGCTTAGGAAGCCAATA 1601561 32 100.0 34 GAAGCCAATA ................................ CCGGAAGGACCATGAACGATTGATAATGTCCCCC 1601627 32 100.0 34 AATGTCCCCC ................................ CTTGTCAGCAGAGGAGTTGAGGTGCTACGCCAAA 1601693 32 100.0 34 CTACGCCAAA ................................ TTGGACTCATTGTAACGCTCAATTGCATACTGCC 1601759 32 100.0 35 GCATACTGCC ................................ ACGGTAGGTTAATGGTTCCTGTAAGAGTAATTGCA 1601826 32 100.0 34 AGTAATTGCA ................................ ATGAAATAGTTATTGGTGGAGTTTATTCAAACGG 1601892 32 100.0 34 ATTCAAACGG ................................ TTATGTCGTCCTCGGCGTCGTTAATGAGAAACAG 1601958 32 100.0 34 TGAGAAACAG ................................ GTCCTAGATGTTGTTCAGAAGCAATTTTACTTCT 1602024 32 100.0 34 TTTTACTTCT ................................ CTACTGCAATTTGAGAATCTCTGTCCATTAACCT 1602090 32 100.0 33 CCATTAACCT ................................ CCCATTAAACGTCCGCCAATTCCTTTTACAGTG 1602155 32 100.0 35 TTTTACAGTG ................................ CAGTTTCCTCTCGCAATTCCATTAGGTAACAAAAA 1602222 32 100.0 33 GTAACAAAAA ................................ ATAGGAGAGGCATATCTAGGAGTTGATGTTGAT 1602287 32 100.0 33 TGATGTTGAT ................................ CTCCAAAACAGGGAAAGGAGAGGTCTGGAATGA 1602352 32 100.0 34 TCTGGAATGA ................................ GTTCCAAGCAGATTTCCTTGTGAATCGTAAACAG 1602418 32 100.0 31 TCGTAAACAG ................................ CAAGTCAATCCCCGTTTGTAGTAGGATGCCG 1602481 32 100.0 35 TAGGATGCCG ................................ CGCCCTGTTGTAGTATCTGCGACATTACTTGATTC 1602548 32 100.0 34 TACTTGATTC ................................ GTTTTTTATCCCTGTCCAGTCCATTCTCGGCAGT 1602614 32 100.0 35 TCTCGGCAGT ................................ TTAATCGGATTGGGCAGGCAAGGCAGGTTAGTTTC 1602681 32 100.0 34 GGTTAGTTTC ................................ ATTTGTTGGGGATTCGGGGTTATTGTTTTGACAA 1602747 32 100.0 33 GTTTTGACAA ................................ GTTGGCGAAAGAGAACAGATGCTTAAAGGCACT 1602812 32 100.0 36 TAAAGGCACT ................................ GGCAAACTGTTTATTTAAGCGGGCTTCCGGGTCGTG 1602880 32 100.0 34 CCGGGTCGTG ................................ CCATTTTTGGAAAGTTTTTTCCCATGATTGGGAA 1602946 32 100.0 35 TGATTGGGAA ................................ TGGAGGAAAAGTTAGAGCGGGTTGAAGAAGCAGAA 1603013 32 100.0 34 AGAAGCAGAA ................................ CAATCCTATGCGCGGGAGACGTATTTGACTATTG 1603079 32 100.0 33 TTGACTATTG ................................ TTTCAAAATGTTAGATTGGGGATGCAAGCCAGA 1603144 32 100.0 34 GCAAGCCAGA ................................ TTACGGCGGCTATGATGATTTTGCTGTCAATAAA 1603210 32 100.0 34 TGTCAATAAA ................................ CCCTCGTTCATACGAACAAGGTCAGGACATTCTT 1603276 32 100.0 33 GGACATTCTT ................................ CTCACTAATTTGTGGTAGGTCGCATTATCTCGT 1603341 32 100.0 33 ATTATCTCGT ................................ ATTAACCATAATAGTCTTCGGGCTTGGGTTAAA 1603406 32 100.0 35 TTGGGTTAAA ................................ ACGGTAGGTTAATGGTTCCTGTAAGAGTAATTGCA 1603473 32 100.0 38 AGTAATTGCA ................................ TTCGAGTTTATATTGCGCCACTACTCTCGTCCTCCCCA 1603543 32 100.0 35 GTCCTCCCCA ................................ GCAGACGCAAAAGTAAGCGTTCCATTCGCATAACT 1603610 32 100.0 34 TCGCATAACT ................................ GAAACTTGAAGCAGATTTGCGCTGGAAAAACGAT 1603676 32 100.0 34 GAAAAACGAT ................................ ATAGTCGGGCACTCACATAAAAAAGTTGCCAGTA 1603742 32 100.0 35 GTTGCCAGTA ................................ GGGATTGGAGATTAAGACAAAAGCGGGAGGGGTGA 1603809 32 100.0 35 GGAGGGGTGA ................................ TGCACTAGCTAGACACCATAGCGACACTAAGAGAC 1603876 32 100.0 33 ACTAAGAGAC ................................ CCAATTCCTGCTCGGCTTTGGCTACCTCGCGCT 1603941 32 100.0 34 ACCTCGCGCT ................................ CGGCCGCGAGAATGACCCAGCGCGGTAAGTGGAT 1604007 32 100.0 35 GTAAGTGGAT ................................ GCACCTTGAAGGAGTCAAGTGCGGTTCGTATGCGT 1604074 32 100.0 34 TCGTATGCGT ................................ GGCGTTTAAATAAAAAGGAGGAATGAACCATGAA 1604140 32 100.0 34 GAACCATGAA ................................ TTGGGCAAGTTAAATTCTTCAGGCTTGGTACGCT 1604206 32 100.0 34 TTGGTACGCT ................................ TCCGAAGGTCACTCTCAAGGTTGTAGTTCCTCGT 1604272 32 100.0 36 AGTTCCTCGT ................................ ATCAATGGGCAGATACACGTAACGCATAGGCCCACT 1604340 32 100.0 34 TAGGCCCACT ................................ ATTTCAGCTTGTAGCCCACATTCGACGTTCTCAG 1604406 32 100.0 33 ACGTTCTCAG ................................ ACCTTGTCATACGCAAGTTGTAACCGCAGGCAT 1604471 32 100.0 34 CCGCAGGCAT ................................ CTTTGGTACTTCTACATTGTAGGCATTTCCTAAT 1604537 32 100.0 34 ATTTCCTAAT ................................ CCACATTTCCGTCACCTCCTTCCTGTGATGTAAT 1604603 32 100.0 34 GTGATGTAAT ................................ GGATAGAAAAGAAGGTGAGAGAAGTCCTACAAAA 1604669 32 100.0 35 TCCTACAAAA ................................ CCACCTCCCGTAAATCGCAACAAAAAACCGGGGGC 1604736 32 100.0 34 AACCGGGGGC ................................ ACGTCAAAGGGCGATTTATACGGGTCAAGCCCGA 1604802 32 100.0 34 TCAAGCCCGA ................................ CCTGTGGAAGCCGGATGATATGGTTTGATAAAAA 1604868 32 100.0 34 TTGATAAAAA ................................ ACCATTCCCAATGAGGGTACCACCTTTTGAGAGT 1604934 32 100.0 35 TTTTGAGAGT ................................ CTTACGATGATAGTAGAGACGATTATCCGTTGTGC 1605001 32 100.0 34 TCCGTTGTGC ................................ GTTGGTTAACCAATAGGAGTCCAAAACACAAGTT 1605067 32 100.0 36 AACACAAGTT ................................ CCACTTCTAGTAGCCTTCTTTGCGCCGTAATTCAAA 1605135 32 100.0 35 GTAATTCAAA ................................ CTCGTGATCTTGTACCTGTTTCTTAATTTCTTCGT 1605202 32 100.0 33 ATTTCTTCGT ................................ ATCATCGCTTCGCTATAACCACCCCAGTCAAGG 1605267 32 100.0 37 CCAGTCAAGG ................................ ACGGCATTTGCGCCCCTCCCTGTGTTAGCTGTCCAGT 1605336 32 100.0 34 GCTGTCCAGT ................................ TATTTATCAAATTCGGTGTCAGTAGTTGCTTCTT 1605402 32 100.0 34 GTTGCTTCTT ................................ TTGATTACATCATCACATACAACAATGAGCGTCT 1605468 32 100.0 35 ATGAGCGTCT ................................ CGCGATAGACAGGTTGTCGAGGCAAAATTTCGCAA 1605535 32 100.0 AATTTCGCAA ................................ TGTATTGCCC ========== ====== ====== ====== ========== ================================ 120 32 34 GTTTCAATCCACGCTCCCGCGCGGGGAGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [5,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.40,-10.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [314,242] Score: 0/0.18 # # Final direction: R [0,4.87 Confidence: HIGH] >NC_014221 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1805256 37 100.0 34 TGCTGCGACC ..................................... GTTGGGCCGCTGCGAGCCCTCAAGGGGGCGTCTG 1805327 37 100.0 35 GGGGCGTCTG ..................................... GGGGCGCTAACAGCCACACGGGCGAGTTCGACACG 1805399 37 100.0 35 GTTCGACACG ..................................... TTGCTGACCCTGCACCTCCGCGGGCAGGGAATTGA 1805471 37 100.0 32 AGGGAATTGA ..................................... CCGAGATGTGGCCTTGGAGGCGTGGCTGAGGG 1805540 37 100.0 37 TGGCTGAGGG ..................................... AAGCTCCAGCGGTGCGCGCCCTCACGCGGGGGGAACG 1805614 37 100.0 34 GGGGGGAACG ..................................... TGATCAAATTCGCGGGGGGTAAATTCGCGGGGGG 1805685 37 100.0 35 TCGCGGGGGG ..................................... TGCTGCCCAAGGAGGCAATCATGACGGACGAGATA 1805757 37 100.0 34 GGACGAGATA ..................................... GGTCGCGCGCGCTGGAGCGTCAACCGGCTGTCCA 1805828 37 100.0 34 CGGCTGTCCA ..................................... GAATCCAATGTCAGGGACGACATAGAGGAAATAA 1805899 37 100.0 33 GAGGAAATAA ..................................... GCTTTGCAGAAGCTTGTCTATCAGCATGTCAAG 1805969 37 100.0 37 GCATGTCAAG ..................................... AGAAGCCTGAGACTGGATAATCTCCCCTATCTCGTCA 1806043 37 100.0 34 TATCTCGTCA ..................................... GTGGGATCGGCGGCCAAGGGGGTGCGCTCGGCGA 1806114 37 100.0 36 CGCTCGGCGA ..................................... TGTCGACATCGCCACCCACCCAGCCTTCGTCTACGA 1806187 37 100.0 36 TCGTCTACGA ..................................... ACCAGAGGGAGGTGTGCAGGTATCACGTCACGGACA 1806260 37 100.0 35 GTCACGGACA ..................................... TGTTGCAACGGTCCCCGGTGGGCGGGGCGGGGTGG 1806332 37 100.0 35 GGCGGGGTGG ..................................... TTGACTCTCTCCCGCACCCCGACCTCAGCTGCATA 1806404 37 100.0 35 CAGCTGCATA ..................................... ACCATCACCCAACACACCCTGACAATGACCGCAAT 1806476 37 100.0 35 TGACCGCAAT ..................................... ACCGTCCGCCTCGACGTCTCCGCACCGGTGCACTA 1806548 37 100.0 35 CGGTGCACTA ..................................... TTTGCGTCCTACCAAGAGCTGTCGATCGAGGGGGT 1806620 37 100.0 37 TCGAGGGGGT ..................................... AGCGGGCTAAAAGCCGAAAGCGCGAGTTTTATGGGGG 1806694 37 100.0 38 TTTATGGGGG ..................................... TCCGTATCCACGGAAAACTGGCGCCGCAGTGCCTCCCC 1806769 37 100.0 34 GTGCCTCCCC ..................................... AAACGGCGCCGCGGCTTGCGGGCGCCGCCGGATC 1806840 37 97.3 36 CCGCCGGATC ..........C.......................... CTGGTGCGCCAGGTCTTTCCAGACGCGCCGGCTGTT 1806913 37 97.3 34 GCCGGCTGTT ..........C.......................... TGCTCGAGCGCGAAGGTGTTGGCGTCGAGCACGT 1806984 37 97.3 TCGAGCACGT ..........C.......................... AAAGCAACAA ========== ====== ====== ====== ========== ===================================== 25 37 35 GTTGCAGCCGTCCTTCGGGGCGGCTGAGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [6,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-14.90,-9.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [38.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [182,246] Score: 0/0.18 # # Final direction: F [4.87,0.64 Confidence: HIGH] >NC_014221 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2406347 36 97.2 38 CCATTGACGG ................................C... TAGGGCAAAGGTCTTCTGTAGGCAGCTCAACTGTGATT 2406421 36 97.2 41 AACTGTGATT ................................C... TTCACGTTCACAGCACCGCCACCGGTAGGACCCGGTGGCTC 2406498 36 97.2 39 CCGGTGGCTC ................................C... CTCCCTCGTCTTTCGGTTCCCCCTTTTTATGCGTCTCTT 2406573 36 97.2 41 TGCGTCTCTT ................................C... ACGAACCTGTGGTCATAGCTCAGGCCGGGCGCTACGAAACG 2406650 36 100.0 41 CTACGAAACG .................................... CCATCGGAGGGGACATCTGAGGGGGGCGCAACCTCGTTTGT 2406727 36 100.0 41 CCTCGTTTGT .................................... AGGGAAATTCATGTTCGTAAACCTCACGCCACACCCAGTTA 2406804 36 100.0 41 CACCCAGTTA .................................... TGGAGGCATAAGATGGCTATCCTGGCGTTCAGAAAAAGCCA 2406881 36 100.0 40 GAAAAAGCCA .................................... CAGACGCTCCTCACCTTCGCGACACTACCGACACCTGCCG 2406957 36 100.0 41 ACACCTGCCG .................................... CGCTCCGTCATACTCACCCGCGTCGAGGAGAGCCGCGTAAG 2407034 36 100.0 41 GCCGCGTAAG .................................... CTGCGCGCCGCTTTCAAGCGCCTGGTCCTCAAGCACCACCC 2407111 36 100.0 40 AGCACCACCC .................................... TCGTCGAGGGTAGCTGGCAGGACATCACCAACATGCGCCG 2407187 36 100.0 40 ACATGCGCCG .................................... AAACGCAACCGCCCTGGGCGCACCGTCTTGTAAAACCATG 2407263 36 100.0 TAAAACCATG .................................... TCTACCCTCT ========== ====== ====== ====== ========== ==================================== 13 36 40 GTTTCAATCCCCTGACGGGGCAGATCCTTTTGTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [7,11] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.10,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [585,453] Score: 0/0.18 # # Final direction: R [0,5.24 Confidence: HIGH] >NC_014221 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2489905 29 100.0 32 CTGGGCTAGT ............................. ATGCAGCGACTAAAGCACCGGGCCGAGGCTCT 2489966 29 100.0 32 CCGAGGCTCT ............................. CGTTCGGGGTATCGCTACCCCAAGTTCCCGTG 2490027 29 100.0 32 AGTTCCCGTG ............................. TCGCGGACGCGCGTGATTACCGTCAGCGTCTG 2490088 29 100.0 32 TCAGCGTCTG ............................. GCGGCGGAGACGGTGCTGCGGACGGTTGCGCG 2490149 29 100.0 31 CGGTTGCGCG ............................. TTGCCGCCGCCGCGCTATCTGAGCCCGTACC 2490209 29 100.0 32 AGCCCGTACC ............................. GACGAGCAGGGGCGCGTCCGCTACCTCGTCGA 2490270 29 100.0 32 ACCTCGTCGA ............................. GGGGAGCTAGACGCGGCATGAAAAAGGGCGGC 2490331 29 100.0 32 AAAGGGCGGC ............................. CTCCAGGGGCTCGGGGAAGTTCAGCCAAACAT 2490392 29 100.0 32 AGCCAAACAT ............................. CGCCTTGAACGAGCGGGTATCGGCTCTATCTC 2490453 29 100.0 32 GCTCTATCTC ............................. GTACAGGGTGAGCACCCTCCCCTCCCCTTCCT 2490514 29 100.0 32 TCCCCTTCCT ............................. TAGGCACCTTCCTCGGCGTTGTAGAAGAGGGC 2490575 29 100.0 32 AGAAGAGGGC ............................. GACAACGTGGGCAAGGTGTTGGCTTTTGCCCA 2490636 29 100.0 32 CTTTTGCCCA ............................. AAGTACATCAACCGCGTCAAGGCACTCGGCCT 2490697 29 96.6 33 CACTCGGCCT ............................A GTCTCTCTCGCCCCGCCCCCCCGGCATCGTCAG 2490759 29 100.0 32 GCATCGTCAG ............................. TTGACGGCTTCAGGCGCGACGATGTTCAGAGC 2490820 29 100.0 32 TGTTCAGAGC ............................. GGTATGTCGCTGTAGCGCTTGGAGCAGGTCAG 2490881 29 100.0 32 AGCAGGTCAG ............................. AGATTGGTATGTGCTGACACGTGGCGACACCC 2490942 29 100.0 32 GGCGACACCC ............................. AAGCCGCGCAGCTCACCATCGATATCGCCAAG 2491003 29 100.0 34 TATCGCCAAG ............................. TGGGGTGAGGTCGATCTACTCACCGGCTCGCACC 2491066 29 100.0 32 GGCTCGCACC ............................. GACCGGGGCTTGTCCCTGAGAGCAAACGTGGC 2491127 29 100.0 32 CAAACGTGGC ............................. GGTAGCAACAATCGCCTGCATCAGATCACGTC 2491188 29 100.0 32 AGATCACGTC ............................. GCGCTGGGCCAGAGCGTCGACCCCAACGACGC 2491249 29 100.0 32 CCAACGACGC ............................. CGCGGGGGAGGTCTACGGCGAAACTGAAACCT 2491310 29 100.0 32 ACTGAAACCT ............................. CGCGGGGGAGGTCTACGGCGAAACTGAAACCT 2491371 29 100.0 ACTGAAACCT ............................. GTGCTCCCCG ========== ====== ====== ====== ========== ============================= 25 29 32 CTTTTCCCCACACGCGTGGGGATGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [40.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [236,87] Score: 0.18/0.18 # # Final direction: F [0.45,0.37 Confidence: LOW] >NC_014221 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2504070 29 100.0 32 NNNNNNNNNN ............................. GACTGGCTCAATCTTGACAAAAGGGGATGAAC 2504131 29 100.0 32 NNNNNNNNNN ............................. CTCGACGAATCGCTGGAGCACGCCTGGATTGC 2504192 29 100.0 33 NNNNNNNNNN ............................. TCCGAAGGCGGCATTTCGCAACTGGGGCTCTTT 2504254 29 100.0 32 NNNNNNNNNN ............................. CTAGCACATGCGCTGCACGGCCTATCAGTGTC 2504315 29 100.0 32 NNNNNNNNNN ............................. AATTCGCTCCCTTTGACGAGGTCGTCAAGGTC 2504376 29 100.0 33 NNNNNNNNNN ............................. GCGGATCAACTCCAGCGGGCGAACCAGGCGCTC 2504438 29 100.0 31 NNNNNNNNNN T............................ GAGCATGGCCTCGTAGTGACGGCCGAGCTTG 2504498 29 100.0 32 NNNNNNNNNN ............................. GCCGTGCAGAGCGCTAGTCACCATAAAGCCAT 2504559 29 100.0 32 NNNNNNNNNN ............................. TGAGAGGCTAGGATGTGTATGGCGGCCAGCTC 2504620 29 100.0 32 NNNNNNNNNN ............................. GAGTTTACCAACGCCTATCTGGTCGGCACCCA 2504681 29 100.0 32 NNNNNNNNNN ............................. GAGCCAGGTGATCATGGCGTGCTCACCCGCCT 2504742 29 100.0 32 NNNNNNNNNN ............................. TTTGACGCCTGTGACCTGTGGAGCGCTTCGTT 2504803 29 100.0 32 NNNNNNNNNN ............................. ATGCCCCTACTGACTCGCTCGGAAGGTTAAGG 2504864 29 100.0 32 NNNNNNNNNN ............................. AGCCAGACCGGTGCGCTTATCCATCCGCCCAA 2504925 29 100.0 33 NNNNNNNNNN ............................. GCATACCTTATGCACCACACCGACCCGCGCCGC 2504987 29 100.0 33 NNNNNNNNNN T............................ GATGACGCGCTGCACGCCGGTGAGCACGCCGGT 2505049 29 100.0 32 NNNNNNNNNN ............................. TGCTTTAGCCCTGTTGAAAATCACGCTGTTTG 2505110 29 100.0 32 NNNNNNNNNN ............................. TAGCCCCCGATACCGAGCAAGTTGCTGACGCC 2505171 29 100.0 32 NNNNNNNNNN ............................. GTCGTCTAGGAAGAGCTGCACAACCTCACCAC 2505232 29 100.0 32 NNNNNNNNNN ............................. GGCGAGCCGCTCCAACGCCTCCACCCCCTGGA 2505293 29 100.0 32 NNNNNNNNNN ............................. GTTAACCTTGTCTATCCTGGTGTCGCTCCTCG 2505354 29 100.0 33 NNNNNNNNNN ............................. GTGTGGCAGTGACCACACCCTAGGCGAGCGCAT 2505416 29 100.0 32 NNNNNNNNNN ............................. TTGGCTCCAGGTCTCGAGCTGGCCCTGGAGCG 2505477 29 100.0 33 NNNNNNNNNN ............................. GCAACGTAAACCGGAACGGTTCCCCGAACTCCG 2505539 29 100.0 33 NNNNNNNNNN ............................. GGTTAGGTACGTCCGGGTTGGAAGCCCGATTTT 2505601 29 100.0 32 NNNNNNNNNN ............................. GAGGTCAACCGGACGCCTGTGGGTGGCGTCGT 2505662 29 100.0 32 NNNNNNNNNN A............................ CGCGGGTGGTGCATCTGCATGTCCTCATGGAC 2505723 29 100.0 33 NNNNNNNNNN ............................. CACAACCCACTTGGCCTTATCGCCTTGACCCTG 2505785 29 100.0 33 NNNNNNNNNN ............................. CTTAGCCCACCCGCGCGGCGGGAAGGCTAAGTA 2505847 29 100.0 33 NNNNNNNNNN ............................. CACAACCCACTTGGCCTTATCGCCTTGACCCTG 2505909 29 100.0 33 NNNNNNNNNN ............................. CTTAGCCCACCCGCGCGGCGGGAAGGCTAAGTA 2505971 29 100.0 32 NNNNNNNNNN ............................. TCGCGCGGGTCCACGTAGGGGAGCGCCTGAGC 2506032 29 100.0 32 NNNNNNNNNN ............................. GGCCTGCTCGTCGCTCACCGCCCGGGCCGCCT 2506093 29 100.0 32 NNNNNNNNNN ............................. CCGTGGCGTGACGCGCTCATCGACCGGCGAAT 2506154 29 100.0 32 NNNNNNNNNN ............................. CGCTGAACGCCTGCCCGAAGGGAGGAAACGAC 2506215 29 100.0 32 NNNNNNNNNN ............................. CGCGCCCCACCACTCCTTTTCAGGCCGGAAAG 2506276 29 100.0 32 NNNNNNNNNN ............................. CGGTACGGGCTCAGATAGCGCGGCGGCGGCAA 2506337 29 100.0 33 NNNNNNNNNN ............................. GCAGATTGAGCACGTGAGAGCGCACGCTGGGCG 2506399 29 100.0 32 NNNNNNNNNN ............................. ACCCGAGCAATCATGGCCGAGCTGCCCGACTC 2506460 29 100.0 32 NNNNNNNNNN ............................. GGCGGGCGGGAACACCAGCAGCGCCGCCGCGC 2506521 29 100.0 32 NNNNNNNNNN ............................. CCCGTTCCCAGCCGTCATCAGGTGGTGGAACG 2506582 29 100.0 32 NNNNNNNNNN ............................. ACCGTCAACGACCTCGACGGCGAGGTGGTCAA 2506643 29 100.0 32 NNNNNNNNNN ............................. CGCGTTCTGATCGGGTCTCTAGCCTACTACTA 2506704 29 100.0 32 NNNNNNNNNN ............................. GTTGTAGTGGGCGCCGAATTTGTCTTTCAAGA 2506765 29 100.0 33 NNNNNNNNNN G............................ GCCCGCCGGTGGGTAGGGGCTCTTGAGCCCCTA 2506827 29 100.0 32 NNNNNNNNNN ............................. GGCAAAAAACTGCTCCGGAGGTTCTCATGTCC 2506888 29 100.0 32 NNNNNNNNNN ............................. CCCGTCCTGTTGGGGGTCGCTGTGCGTGGTCG 2506949 29 100.0 32 NNNNNNNNNN ............................. ACCGTTCACATCCCTCCCGTACCGGGTACCGA 2507010 29 100.0 32 NNNNNNNNNN ............................. TTCATCGACTTTACAAGAACACCGCTGCACGA 2507071 29 100.0 32 NNNNNNNNNN ............................. GAGGATGGATGATGATGAAAGCTGTCGCCACG 2507132 29 100.0 32 NNNNNNNNNN ............................. GCTTGCGGCTCATCCTGTGACAGCTCTTGCAG 2507193 29 100.0 32 NNNNNNNNNN ............................. CAGTGCTGGCCCAACCCGCGAGCACTGGAGCT 2507254 29 100.0 32 NNNNNNNNNN ............................. GGGATGCGCATGCCGTCGCCGTTGACAAGCGC 2507315 29 100.0 33 NNNNNNNNNN ............................. GATGCTCGACCTCCTCGGGGGGGCGTGCGACGG 2507377 29 100.0 32 NNNNNNNNNN ............................. TCCATCTCGGAAGTTGAAAGGAGACGAGCGGG 2507438 29 100.0 32 NNNNNNNNNN ............................. GTCGTAATCCCTGGCCGGTTTTATCCGACAAG 2507499 29 100.0 33 NNNNNNNNNN ............................. GCCCGAGACCTCTGAGTCGGTGCCGGTGAGCAT 2507561 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 58 29 32 CGGTTCATCCCCACGTGTGTGGGGAATAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [26.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [75,112] Score: 0/0.18 # # Final direction: R [0,1.05 Confidence: HIGH] >NC_014221 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2586446 36 100.0 42 CCCTCGTCCG .................................... CCGCATCCGAAACGTAACATGGCTTGCGGTTGACGAGGTTTT 2586524 36 100.0 41 ACGAGGTTTT .................................... CACCGGCTACGACATGGGCACTTTTGAGTTCGGCGGCACCG 2586601 36 100.0 41 GGCGGCACCG .................................... AGGTTTTGACGCCGAGGGGAGCGTCCCCCAGACTCAGGCGG 2586678 36 100.0 39 ACTCAGGCGG .................................... AGAGTCCTGGCACGCGCATGTCGAGCGCGCCGGTATCGA 2586753 36 100.0 40 CCGGTATCGA .................................... CGGGGGACATCTACCTCGTCGTACATGGGGCCGCATACTT 2586829 36 100.0 36 CCGCATACTT .................................... ACTCTTAAACATCCCGGCTGAGTTACGGGGTGTCGA 2586901 36 100.0 40 GGGGTGTCGA .................................... TTGACGTTACTGACAACGAGTTCTACTCGGTGGACGAGAG 2586977 36 100.0 40 TGGACGAGAG .................................... CTGGGACTCAGGTCAAGTGGGTTGGGCGTACGTCACACGT 2587053 36 100.0 41 CGTCACACGT .................................... TACTAGAAAGGAGCGGAGATGCAGTACGAGGACTGCGTTAA 2587130 36 100.0 39 ACTGCGTTAA .................................... TCAACCCGAACGTGATCAGAGACGACCGGCGACGCTTCA 2587205 36 100.0 42 CGACGCTTCA .................................... CACAGACCCTAGGAAAGATAGGACTGCCTACGAGACGCTCCT 2587283 36 100.0 43 AGACGCTCCT .................................... CGCACCTCGAGCGCCGCAACCTCGACGCCGCCGGTACGCGTGT 2587362 36 100.0 41 GTACGCGTGT .................................... TCACAAGCATTTGGAGGGGAGAAATGATAGTTAATTTTAAA 2587439 36 100.0 40 TAATTTTAAA .................................... ATGGCGAGTTTGTTGACCGTCTCCGTAAAACGTGAGATGT 2587515 36 100.0 CGTGAGATGT .................................... TCTACCCTCT ========== ====== ====== ====== ========== ==================================== 15 36 40 GTTTCAATCCCCTGACGGGGCAGATCCTTTTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [7,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.10,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [36.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [80,343] Score: 0.18/0.18 # # Final direction: R [0,5.69 Confidence: HIGH] >NC_014221 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 347049 37 100.0 35 TGCTGCGACC ..................................... CTGAGGGCTCGGCTGAAGAGCATGTTGCGGGGGTA 347121 37 100.0 34 TGCGGGGGTA ..................................... CGGACGGACGTGCTTAGCCGCTACAGCGGCGAGC 347192 37 100.0 35 AGCGGCGAGC ..................................... CGAGTCCCTCCATCTCGGAAGTTGAAAGGAGACGA 347264 37 100.0 35 AAGGAGACGA ..................................... TGGGAGCCGCACACGATGCTCCTCCTCTGGGCGGA 347336 37 100.0 36 TCTGGGCGGA ..................................... GGGCGTCGGTTCAGGGATACTGCACGTCGCCAGCAG 347409 37 100.0 36 TCGCCAGCAG ..................................... ATGCGGTCCATGCTCGAGCAGGCGGACTTTTCGCGG 347482 37 100.0 35 CTTTTCGCGG ..................................... TAGACGACCGGGTGCCAGAGCGGGTTTTCGCTCTG 347554 37 100.0 36 TTTCGCTCTG ..................................... ACGAACTCCGCCGGGGACATCGCCAAAATAAGGCAG 347627 37 100.0 36 AATAAGGCAG ..................................... CGCCTCCGAAGACCGGACGAGCCCACGTATAGCCTC 347700 37 100.0 36 GTATAGCCTC ..................................... TCGGCGTCAGCGTCGATGCTCTCGGCGAGCGCCATG 347773 37 100.0 36 GAGCGCCATG ..................................... TTCGTCAAGCGGATAGGCCACGCACCGCTCAAATAG 347846 37 100.0 35 GCTCAAATAG ..................................... TGGATGCTATGCAGCGACAGGAGAGAGCAGCATGA 347918 37 100.0 35 AGCAGCATGA ..................................... GCGGACGGTGCCGACACGGTTATCGGGAATGCTGA 347990 37 100.0 34 GGAATGCTGA ..................................... AAGGGTCAGGGAGTACAGCCAGGAGCGTCTAGGA 348061 37 100.0 35 GCGTCTAGGA ..................................... CTCTGTCCTAATATACCCCTCGCGCGCCCACTCGG 348133 37 100.0 33 GCCCACTCGG ..................................... TCCACGCTCGCGCCGGGGGAGACGTCCCCGGCG 348203 37 100.0 35 GTCCCCGGCG ..................................... TTGTTAATGCCCCTGCTTCACTCTCGGTAGCACAA 348275 37 100.0 35 GGTAGCACAA ..................................... ACAACCTAGCCCGAGAGCCGCGCGGTCAAGCCCGC 348347 37 97.3 TCAAGCCCGC ....................................T GCGGGTGTG ========== ====== ====== ====== ========== ===================================== 19 37 35 GTTGCAGCCGCCCTTCGGGGCGGCTGAGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [6,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-17.60,-16.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [38.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [364,337] Score: 0/0.18 # # Final direction: F [5.55,0.37 Confidence: HIGH] >NC_014222 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 339838 37 100.0 37 CTGTAGACAT ..................................... ACTTGCAGTATTAATCTGTCTAGGTTTCGAAAAACCA 339912 37 100.0 36 CGAAAAACCA ..................................... CCTGTTGCCGTCCGTATTCTCCCAATTTAACAGATT 339985 37 100.0 37 TTAACAGATT ..................................... TTAAATACGGACTTTGCGGGGGTTATATACAATATAG 340059 37 100.0 36 TACAATATAG ..................................... CATGTCTACTAAACCCCACTCTCTTTCAGTATCTGA 340132 37 100.0 35 CAGTATCTGA ..................................... TGATGGAGAAGTGACAGGATCTTCCTTCGAAGCAT 340204 37 100.0 38 TTCGAAGCAT ..................................... TTATACAAGATTTGCGGTGAAATTGAAATATTAATAAC 340279 37 100.0 39 TATTAATAAC ..................................... TTTTAAATTATCTAAAAGTATTTCAGCTTGTTCCTTGCT 340355 37 100.0 39 GTTCCTTGCT ..................................... TACAGACATTGCTAAAAAAATATATCATTGTGATAATAG 340431 37 100.0 37 GTGATAATAG ..................................... TTTTAACAACAAAAATGTTGTTAGTATCATTTAATTA 340505 37 100.0 41 CATTTAATTA ..................................... AAACCATCTGAAGAGTTGCCAAATCATATATATATACAATC 340583 37 100.0 39 ATATACAATC ..................................... ATAGTAATCAGCAAAAAGCTAAAGAATTGGAGAATATAT 340659 37 100.0 39 GAGAATATAT ..................................... TGATGTACTTAGCTTGCTTTTCTGAGACTCTTATCTGCA 340735 37 100.0 35 CTTATCTGCA ..................................... AAAATTGTATTCAATTGTACAAAGAAATTTAGTAG 340807 37 100.0 33 AATTTAGTAG ..................................... ATGTGTATGTACCTAATCGATTAAGAGATGAAC 340877 37 100.0 36 AGAGATGAAC ..................................... AAAATCTTGTGGAATGACTATTGATGATATTGCAGA 340950 37 100.0 39 ATATTGCAGA ..................................... TATCATATTGATTGTATGCTGATGTATAATCAATATTAC 341026 37 100.0 36 TCAATATTAC ..................................... TTTATCATACCCCCATACTTTTAACAAATAGGGTGT 341099 37 100.0 35 AATAGGGTGT ..................................... TTGTACGAGGCTCGTTAGTATCGGCTATAATGTTA 341171 37 100.0 41 TATAATGTTA ..................................... TAAAATAATAAAATATATTTCATAATACATTAACAAATTTT 341249 37 100.0 39 AACAAATTTT ..................................... CACAAGATAACAGTACAAAATTTAACGATAGTTTATTAA 341325 37 100.0 36 AGTTTATTAA ..................................... ATTTTATCCTCTTAGGTATATTGGGAATAGATATAT 341398 37 100.0 37 ATAGATATAT ..................................... TAAATATTTATTTAATTATTTAATAGAAATATTTATA 341472 37 100.0 40 AATATTTATA ..................................... TGACCTTTTTAGATGAATAGTATTACAAAACAATAATTAT 341549 37 100.0 38 CAATAATTAT ..................................... TTTTTTTCTAAAAGGACAGTTCAAAAAATTCTATGATA 341624 37 100.0 39 TTCTATGATA ..................................... AAAAAGGTCATATAGGATATATTGATGAATCTATATATT 341700 37 100.0 39 TCTATATATT ..................................... ATTCATATAATATAATTAGTTGAAAAACTAAATATTGAA 341776 37 100.0 45 AAATATTGAA ..................................... TCTTCTGTAAATCGTCTAACCGCGTGCTTACAGACGATGGTTTCA 341858 37 100.0 40 GATGGTTTCA ..................................... ACAGATGACGAACCGTACGGACACGGTGCAAAAAGTGCAA 341935 37 100.0 34 AAAAGTGCAA ..................................... TTTATTTTATTATGTTGTTTTTAAGTCAACATAA 342006 37 100.0 36 GTCAACATAA ..................................... TAAATGGCGTAAAACTATTCATATAAAAGATATTTA 342079 37 100.0 37 AAGATATTTA ..................................... GTTCAGGTTTACCCCTTAACCCATCAATTACTTGTCG 342153 37 100.0 36 TTACTTGTCG ..................................... CCATATTGTACAAGAACAAAGTTATTATCAAGAAGA 342226 37 100.0 36 ATCAAGAAGA ..................................... TAGTGTCGCTATCGGTGCCAGTACACTTATTGCCAG 342299 37 100.0 36 TTATTGCCAG ..................................... TATTGATATGTTTGAACCACATATCAACGAATTATG 342372 37 100.0 ACGAATTATG ..................................... ACGTAGTTAA ========== ====== ====== ====== ========== ===================================== 35 37 37 GTTTCAATCCTTGTTTTAATGGATTATGCACTGTGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.40,-2.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [90,539] Score: 0.18/0.18 # # Final direction: R [0.37,4.68 Confidence: HIGH] >NC_014221 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 476285 36 100.0 37 TGGGCTCCCT .................................... GAGAATTTTTGTTTAGAATAGGGAAAAATTTCCTATT 476358 36 100.0 38 ATTTCCTATT .................................... CGGAGAGCGTCTACGCCCTTCTGCACTCCTGGTCAGAC 476432 36 100.0 40 CTGGTCAGAC .................................... ACAACGAGCGTCCGGAGCCCCTCGGAAGCAGCGTAAATGG 476508 36 97.2 42 GCGTAAATGG .............A...................... CAAGAGGCCATTCGAGTGGATAACCACCCTGGCCTCCGGCAA 476586 36 100.0 37 CCTCCGGCAA .................................... TGGTGACTATTGACCGCCACGCCATGCGGGTGTGGCT 476659 36 100.0 46 GGGTGTGGCT .................................... CCAGCTTGAAGACCGTCCGCCCCGCCGCCCTGCCCAAACGGGTCAA 476741 36 100.0 39 AACGGGTCAA .................................... AACAGACTACGTGCCGGTGGGGGTCGGGGACCTCATTCG 476816 36 100.0 44 ACCTCATTCG .................................... TCAGGTTCATTAGGGTTGACCAGAATCAGGAATAGCGTTCAGAA 476896 36 100.0 37 GCGTTCAGAA .................................... AGGCCCCCGTACTGCGCCGCCATCCCCGCGCGGAAGG 476969 36 100.0 39 GCGCGGAAGG .................................... TGAGATTTACAAACTTAAACATGATGTCCCTTTCTGCCC 477044 36 100.0 CTTTCTGCCC .................................... TCTACCCTCT ========== ====== ====== ====== ========== ==================================== 11 36 39 GTTTCAATCCCCTGACGGGGCAGACCCTTTTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [7,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.10,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [45.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [679,231] Score: 0.18/0.18 # # Final direction: R [0.45,5.65 Confidence: HIGH] >NC_014222 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 539972 37 100.0 36 CTATATCGTT ..................................... TACTACTAATTTCGGGAAATATACGCATATTGGAGA 540045 37 100.0 39 ATATTGGAGA ..................................... TACAACTACCAGAAACACCAAATATCGAAACAAATTCGA 540121 37 100.0 37 ACAAATTCGA ..................................... TTTATAGCTCCTGGAGCATCAGGGGGTTTAGATATTA 540195 37 100.0 38 TTAGATATTA ..................................... TATAAAACACAATGGGCAACGGATAATTGTTGAAGAAC 540270 37 100.0 39 GTTGAAGAAC ..................................... AGTTCAACACCTCATAATCGACATCAATTTGTTGATTAT 540346 37 100.0 36 TGTTGATTAT ..................................... GGGGGGATTAGCACAGCACAGTTTGAATGTATTAGC 540419 37 100.0 36 ATGTATTAGC ..................................... GAAAATAATGGTGGAAGATATTCACGTTATCTTAGA 540492 37 100.0 36 TTATCTTAGA ..................................... TTCTAAACTATCGCAGTTTAGAAGCAAGGGCTGTCG 540565 37 100.0 36 AGGGCTGTCG ..................................... AAGATGCGTATATTCCCTTAAATATATGCATTGTAG 540638 37 100.0 35 TGCATTGTAG ..................................... AGTGTAGTATACGATATTACAAAACAATTTAGTGA 540710 37 100.0 40 AATTTAGTGA ..................................... TAAAAAGGTGGTAAAATGGACATAAGCGAATTAATGAAGT 540787 37 100.0 35 TTAATGAAGT ..................................... TTGAAAACAGTTTCAGATTATGATTTCAGACAGTA 540859 37 100.0 37 TCAGACAGTA ..................................... CTGAACGATTCAATTGATGAAGAATCTTCTCAAAAAT 540933 37 100.0 39 TCTCAAAAAT ..................................... AGATTATATGAAAAATCCCACGCCAAAAGAATCGATAAT 541009 37 100.0 37 AATCGATAAT ..................................... TTGAGCTATATCCTCAAACTAATAATGAGGTATATGC 541083 37 100.0 40 AGGTATATGC ..................................... AATGAAGTACAAACATTTACATTATTCTAAAAAAGGTGAT 541160 37 100.0 38 AAAAGGTGAT ..................................... AGACCAACCCCTTAGACGGGGAAAATCGCCAAAACCTC 541235 37 100.0 35 CCAAAACCTC ..................................... TTTTCTAATATGAAGAAATCAAAATATGTATTCTT 541307 37 100.0 33 ATGTATTCTT ..................................... TGGATATTCCAGATTGGATTACCAGACAAATAT 541377 37 100.0 38 AGACAAATAT ..................................... TGACCCCCAGTGGTTGGGGGAAAAACATTATAGCGAAT 541452 37 100.0 37 TATAGCGAAT ..................................... ATAATGCAATATCTTTATTGATAGACACAAGTTTCGA 541526 37 100.0 35 CAAGTTTCGA ..................................... AATTGAATGAACTTTTCTAAGGGGGAGGTTAGTAA 541598 37 100.0 38 AGGTTAGTAA ..................................... AATGCAGTTCCATTTATTGCGTCAGTCAAAGGTTCTAA 541673 37 100.0 35 AAGGTTCTAA ..................................... CAATGTATACAATAATGGATGGGCAACCGGTGGAA 541745 37 100.0 39 ACCGGTGGAA ..................................... AAAGATATTGAAAGACGTGCAAACGTTAGAAATTCAAAT 541821 37 100.0 AAATTCAAAT ..................................... ACGTAGTTAA ========== ====== ====== ====== ========== ===================================== 26 37 36 GTTTCAATCCTTGTTTTAATGGATTATGCATTGTGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.40,-2.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [676,402] Score: 0/0.18 # # Final direction: R [0.37,4.77 Confidence: HIGH] >NC_014221 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 470705 36 100.0 39 TCGGCCACGC .................................... ACATTCTCATGCCCCGTGTCTCTAACGCCCAGTTGAAGG 470780 36 100.0 40 CAGTTGAAGG .................................... CCCACCGCCTCCGCGCCCGTGGGGAGGTCACGCTCACCTG 470856 36 100.0 40 CGCTCACCTG .................................... CGAGATATCAACGACCATCGTGCTCATCAGTTGCCTCCTG 470932 36 100.0 43 TTGCCTCCTG .................................... TGGCTCTGGCTCTGGCTGCGCAGCAACCGCGACGCGACCAGCG 471011 36 100.0 39 GCGACCAGCG .................................... CATGCGAAAAATCGTCCCCGGGGCCCTGGTCCGCCTCAA 471086 36 100.0 36 TCCGCCTCAA .................................... AATTAAAGCGCTGGTGGACCGAGCAATTAATAAATT 471158 36 100.0 44 TTAATAAATT .................................... AAGACCCTGGTCGAGAACCCCCACCGTATCCTCCGCTACCACCG 471238 36 100.0 39 GCTACCACCG .................................... TCCGGTTTGCCGTCGGGCGTCTCGGGGGGCTGGGCGTTG 471313 36 100.0 CTGGGCGTTG .................................... TCTACCCTTT ========== ====== ====== ====== ========== ==================================== 9 36 40 GTTTCAATCCCCTGACGGGGCAGACCCTTTTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [7,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.10,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [41.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [213,320] Score: 0/0.18 # # Final direction: R [0,5.51 Confidence: HIGH] >NC_014222 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 582647 31 100.0 35 CTTCGATTAA ............................... AGTTACATTACCCGCTTGGGGTCCTCTTGTAATTG 582713 31 100.0 44 CTTGTAATTG ............................... TGCGGTTCTATGCTTTGCTTTACTGCCTTCATAGTATGCGTTTC 582788 31 80.6 38 TATGCGTTTC ------......................... AAGCTTAATAGCCATATCTATTTTTGATTTATCAACCC 582857 31 100.0 37 TTATCAACCC ............................... ATTCAGAATGGAAAATAATTCCTCATTTGGATATTGA 582925 31 100.0 35 TGGATATTGA ............................... AGTTACATTACCCGCTTGGGGTCCTCTTGTAATTG 582991 31 100.0 44 CTTGTAATTG ............................... GTTAGCAAGTTCTCAAATGCCTACGAGTGCAACAAATACCAGAA 583066 31 100.0 38 AATACCAGAA ............................... ATATCCAGAATATTCTTCTGCAGAAATTCCACCGATGC 583135 31 100.0 39 CCACCGATGC ............................... ACTCTGCAAGGTTTGCTTTGCCTAAGTCTGAATTGGGTA 583205 31 100.0 36 GAATTGGGTA ............................... AGGAATAAGTAAAGGTCTTAGTAGTGGGGGCAATAG 583272 31 100.0 35 GGGGCAATAG ............................... ATATATAAAAGTAGTGTATAATGTCGCAATAATAA 583338 31 100.0 39 GCAATAATAA ............................... TTATCTGTGCAATAGTATTCATAATAATAGCAGGAGCTA 583408 31 100.0 39 GCAGGAGCTA ............................... TTATCTGTGCAATAGTATTCATAATAATAGCAGGAGCTA 583478 31 100.0 37 GCAGGAGCTA ............................... TATGTTTTAAGGTGGTTCCAATGGTTAACAATTGGAA 583546 31 100.0 39 ACAATTGGAA ............................... TTTTAATAATCCAAATGAAGTATTTGATTTCTATTGTGA 583616 31 100.0 36 TCTATTGTGA ............................... CTGGTCTATATTCACCGTCAACGAGTAGGTGATTAG 583683 31 100.0 39 AGGTGATTAG ............................... TTCGTGTGCTTCCTGGAACTTTCTCTTTTTTCTTCCCTT 583753 31 100.0 37 TTCTTCCCTT ............................... TTTTTAACTGTTTATGGTTCGTAAATCTTGTTAAATA 583821 31 100.0 39 TTGTTAAATA ............................... ATAAAGATTTTAACCCTGTTGAAGTAGTAAATAATAAAT 583891 31 100.0 37 AATAATAAAT ............................... AAAAAGATGCAAACCTTCCAATCTTAACCAGTAAGAC 583959 31 100.0 35 CCAGTAAGAC ............................... CAACTCCGTCGGTGTTATCCATATTATGCCTCCTT 584025 31 100.0 36 ATGCCTCCTT ............................... TATGGATATGACGTACAGTCCTCAGATAAATATAAT 584092 31 100.0 35 TAAATATAAT ............................... AAATCAAATATCCTATTATTTTTATCGACAGTAAT 584158 31 100.0 34 CGACAGTAAT ............................... TTAAGCGTTGGTTTTCTTAATTCTATTGTTTTTT 584223 31 100.0 36 ATTGTTTTTT ............................... TACGTTATTGTAAGAAACTACAATTAATGAATTTTC 584290 31 100.0 35 ATGAATTTTC ............................... TTGTCTTTTAAGTCTGTTAATCCATCTAATTCCGA 584356 31 100.0 36 CTAATTCCGA ............................... TAATTCTTCTTTTACTTCTTCGAGTTCTTCATCCGT 584423 31 100.0 35 CTTCATCCGT ............................... TTAAAAAATATATTAACATCCACATCTAAATTTTT 584489 31 100.0 38 CTAAATTTTT ............................... TTTTGATATCGATTTGGCAATTAATACTGCCTCATTCA 584558 31 100.0 38 GCCTCATTCA ............................... TTGTTTGCAAATCCATTTTAATATCTTCTTTAATTTCT 584627 31 100.0 38 TTTAATTTCT ............................... TTGTTTGCAAATCCATTTTAATATCTTCTTTAATTTCT 584696 31 100.0 39 TTTAATTTCT ............................... CTAAAACTGCTATGTTTAATAATACTACAACAGGAAACA 584766 31 100.0 36 ACAGGAAACA ............................... TTTCCAATGTATCGCCACCCTGTAATATTGTATATT 584833 31 100.0 36 ATTGTATATT ............................... TGTGAACGACAGAGTGCAAATGTCTACATCTGACGA 584900 31 100.0 35 CATCTGACGA ............................... GTATGCCCAAGTTGTCAACACGTATATATTGACAG 584966 31 100.0 39 ATATTGACAG ............................... AATTCTTCTACAATAGAAAACAAGAGCGCTCCGCCGAGG 585036 31 100.0 36 TCCGCCGAGG ............................... ACCCGTGACATCACCAGACGTCATTTCTACACCTTT 585103 31 100.0 35 CTACACCTTT ............................... TTATATTATATTGTGAGTCTATATTTGCCTGGTTT 585169 31 100.0 35 TGCCTGGTTT ............................... ATTGATTTGGAATTTCAAAATCAATATGAATATAT 585235 31 100.0 37 ATGAATATAT ............................... TTTCCTGTGAATGTATCATCCAAATAAGTCCTACAAT 585303 31 100.0 35 GTCCTACAAT ............................... TCAGTTTTATTACCATTTACATATGTTTTACATTT 585369 31 100.0 38 TTTTACATTT ............................... TCCATATGTTACACCTTTACACCGTTTTATTATAGAAT 585438 31 100.0 36 ATTATAGAAT ............................... TTTAATATATATTATAGTGATCATTAGCTTTAGTTA 585505 31 100.0 36 GCTTTAGTTA ............................... AAAATAAGATATATAAAGCAAGAATACTATGTAATC 585572 31 100.0 34 CTATGTAATC ............................... CCACTTTCCATCCTTCTCCTCGTTTTGTGCCTGT 585637 31 100.0 36 TTGTGCCTGT ............................... CCATCAAAAGACATTAAGATTGATTTGGTTAATATT 585704 31 100.0 35 GGTTAATATT ............................... TGCTTCTGCTTCTGTTTTAAATTCAGAATATATAA 585770 31 100.0 33 GAATATATAA ............................... CCCCGCATCTACAAGATTTCATTTACCTGTAAA 585834 31 100.0 35 TACCTGTAAA ............................... TGTATTGATACCTCTATGAGCTCCGTATAACTTTT 585900 31 100.0 35 TATAACTTTT ............................... TTGACTGCACCGTATCATCATTTGGATACATCATT 585966 31 100.0 36 ATACATCATT ............................... ATTTATATCTAAATCCCCTTCTTTCCATACTTCCGT 586033 31 100.0 39 ATACTTCCGT ............................... GAAGATACATTCTGTAGGGATACAGATAGAAAGACCAAA 586103 31 100.0 39 AAAGACCAAA ............................... GAAAAGTAGAAAAAAATACTATCGATAGGGGGTGAAAAA 586173 31 100.0 36 GGGTGAAAAA ............................... TAAAATAGAACAATATAATCCAAACATGTTAAAAAG 586240 31 100.0 39 TGTTAAAAAG ............................... ACTGTCCAAGTCCAATATTGAAGTCAAAACTAATTAAAA 586310 31 100.0 39 CTAATTAAAA ............................... GAAAAACATTAGGTACTTTTATGATTGCAATCGTCAATG 586380 31 100.0 35 ATCGTCAATG ............................... CTCATAGAATCAAAGTATAATGAAGGTTATTATAA 586446 31 100.0 35 GTTATTATAA ............................... TCAACAATTAATACAGTTCGTAATGTACTTGGTAA 586512 31 100.0 36 TACTTGGTAA ............................... CAATTTTTCAACATCTAATTGTTGAGGGTCAGTAAT 586579 31 100.0 36 GGTCAGTAAT ............................... TTATTTTTAATTATTTTAATTTCCCACCTCAAAACA 586646 31 100.0 36 CCTCAAAACA ............................... TAAATGATTTAAAAACAGCTAACACGACAGAAAACA 586713 31 100.0 36 ACAGAAAACA ............................... TCCCAGTAAGTTAGAACCTTCGTAAACGGAAACACC 586780 31 100.0 33 CGGAAACACC ............................... TTTTTAAAAAATAATTCTTTTTGTTCTTGGGTA 586844 31 100.0 36 TTCTTGGGTA ............................... GCTGCTGCTGCTTTGGGTGTTGGAGCTTTATTATAT 586911 31 100.0 35 TTTATTATAT ............................... TGAACGATATCTTAATTATGAATCACTACATGAAC 586977 31 100.0 35 CTACATGAAC ............................... TTTTCTATCGATATAAAAGGTTCTAATAAAGTATA 587043 31 100.0 36 ATAAAGTATA ............................... TTGCAATTTGGATAGCTTCAGACAAAAATAGTATAA 587110 31 100.0 37 AATAGTATAA ............................... CTTGTTCATATTTGTCTTTTAATTCTTGATCCGTGAA 587178 31 100.0 38 GATCCGTGAA ............................... ATAAAATCGCCCATATAGTATTTTAATTGCTGAAATAT 587247 31 100.0 39 GCTGAAATAT ............................... TAAACCGTACCCTCCAACCCTTGAACTTTGATGACTGAA 587317 31 100.0 38 GATGACTGAA ............................... GTTATCAATGCATCAAAAACAAAAACTTGCTTAAAAAA 587386 31 100.0 35 GCTTAAAAAA ............................... CCCTCGCTTACATTACTTACAAAAGTCGATACTTT 587452 31 100.0 40 TCGATACTTT ............................... TTGGTATTTTATAAACATAAACGTGTAGATACCTTATTAT 587523 31 100.0 36 ACCTTATTAT ............................... TATCAACAATGAATTTATTATTAATCCCACATATAG 587590 31 100.0 37 CCACATATAG ............................... TCATCACCAACGCTTCGACCAGGGGCTTTTGTATTAG 587658 31 100.0 36 TTTGTATTAG ............................... GTAGGGATAAATTAATATTTGGTATAATTTTAAAGG 587725 31 100.0 39 ATTTTAAAGG ............................... ACATTGCGGTAGAATAGAAGACCATTCAATGTATCAACT 587795 31 100.0 37 TGTATCAACT ............................... AACGGAGCGGAGCCTAATAATTTATTATTCTTGTATA 587863 31 100.0 36 TTCTTGTATA ............................... TATGAGTATAGAATACAAATCATTCTATAAAGAGTC 587930 31 100.0 40 ATAAAGAGTC ............................... CAATTAGAAGTTGCAATAGATACTAATATTATGTATAGTT 588001 31 100.0 37 ATGTATAGTT ............................... TCTATGAATGCTGTAGTTACCGCCCCAACTGCAACAA 588069 31 100.0 36 ACTGCAACAA ............................... GCTGACTGACAACGCAGAGATATACAGTCCAAAACC 588136 31 100.0 37 GTCCAAAACC ............................... CTCAGATAAGTGTTCAATGAACGCATATCTTAAAGAT 588204 31 100.0 39 TCTTAAAGAT ............................... TAAAAAAAGCAACGTCTAAGGAAGAGGTTGCAGAAATTA 588274 31 100.0 37 GCAGAAATTA ............................... AGGAAACACGGACACAATCACAACAGGAAACACAAAC 588342 31 100.0 35 AAACACAAAC ............................... TAGTTTATTATAAAAATTTAAAAGGGGGGTAATAT 588408 31 100.0 38 GGGGTAATAT ............................... AGCCCCACAAGTGCAATATATAAGCGTGTTGCACTCGT 588477 31 100.0 38 TTGCACTCGT ............................... TTTGATTTTATTTCTTTAAAGCGGTCTTCTTCTATGAA 588546 31 100.0 39 CTTCTATGAA ............................... ATTTCTTTTTCGAAATTATATTTCATATCCGATAGATAC 588616 31 100.0 38 CGATAGATAC ............................... TCTTCGGATAATTTATATTCTAAGTTTTCAAGTTGGTC 588685 31 100.0 37 CAAGTTGGTC ............................... TATTTCCTCATCAGAATACATTTCTTTAATTTTTTCG 588753 31 100.0 33 AATTTTTTCG ............................... AAACTGCTTCTTTTAATTCTCTATATCCAAATT 588817 31 100.0 36 TATCCAAATT ............................... TGCACGGAGGTGAATATGAAGATAAACATGGTAGTG 588884 31 100.0 35 CATGGTAGTG ............................... TATGTCCGAGAAATAAGGGTCATTTTTCATCCATT 588950 31 100.0 39 TTCATCCATT ............................... TATATTATCAAAAATAATAGGGGAAGCGTATAAAGTTGA 589020 31 100.0 38 ATAAAGTTGA ............................... ACGTAGACAGAGGCGAAGTAGGGTTTGGATATGCCCAT 589089 31 100.0 36 ATATGCCCAT ............................... TATGTTCCTTTTTTTGATTTTCCAATTTCTAACCCT 589156 31 100.0 36 TTCTAACCCT ............................... AATTGGTATGCCCATACCTTGCCTAAACTCTCCAAA 589223 31 100.0 39 ACTCTCCAAA ............................... ATATGGATAGATTAGAGTACAATGTGAAAACTGAAAAAT 589293 31 100.0 39 ACTGAAAAAT ............................... ATAATTATTTCTTTTCCGATTGTTAATATTTCTTCTGAA 589363 31 100.0 36 TTCTTCTGAA ............................... TAAAATAATGAGTAATGCGTTGACCAATAATATCCC 589430 31 100.0 39 ATAATATCCC ............................... GCAATTAAAGCTATTATATAAAATTGAGTTTTGTTAAAG 589500 31 100.0 36 TTTGTTAAAG ............................... TAAATCAGACAATATATATTTTTCAAAAGAAAAATC 589567 31 100.0 39 AAGAAAAATC ............................... TATTAGCATTCAGTGCACTGAAATAAGACTGAATGACTA 589637 31 100.0 35 TGAATGACTA ............................... CCAATATTTACACCAAATTGCCAGTTTTTTACGAT 589703 31 100.0 35 TTTTTACGAT ............................... TCAGCAGATAAATCACCCTTTGCAGCATTTTCCCA 589769 31 100.0 37 CATTTTCCCA ............................... TAGCCTCTGCAAGTCTGTATATGCTGTCTTTCAATCT 589837 31 100.0 36 CTTTCAATCT ............................... TGTCTGAAACTAATGAAACTGGAGTATCTGCTTCAT 589904 31 100.0 39 TCTGCTTCAT ............................... GTTTATCATAAAAAAAGGATACATCTCTTACTTTTCTAA 589974 31 100.0 37 ACTTTTCTAA ............................... TAGCCTCTGCAAGTCTGTATATGCTGTCTTTCAATCT 590042 31 100.0 36 CTTTCAATCT ............................... TGTCTGAAACTAATGAAACTGGAGTATCTGCTTCAT 590109 31 100.0 39 TCTGCTTCAT ............................... GTTTATCATAAAAAAAGGATACATCTCTTACTTTTCTAA 590179 31 100.0 39 ACTTTTCTAA ............................... TAAATTCAACGTTTGGGAGCTCTTTACTCCGCTCTACTT 590249 31 100.0 39 CGCTCTACTT ............................... TGTGGAGGTTGCAGGTCAGTGTGTGTTTAAAGGAGTTAT 590319 31 100.0 34 AAGGAGTTAT ............................... CCTTTTTTAAAATCTAATAACGTCATTGATTATA 590384 31 100.0 36 ATTGATTATA ............................... TTCAACTTCCGTATTACTTGGAAGACCTACCATATT 590451 31 100.0 40 CTACCATATT ............................... TATCAATTGATACGAATTCAATCACGTATAACTCATGCTC 590522 31 100.0 38 ACTCATGCTC ............................... TGAAACAATGAACGAAAATGAAAAATGGGATTATGCTG 590591 31 100.0 38 GATTATGCTG ............................... TAACCCTGGGGCGGTACGTTTTCGGAATTCCTGGCTAT 590660 31 100.0 40 TCCTGGCTAT ............................... TTGTACATTACGCTGATAGCATTAGTGCTTCGCTAATTGA 590731 31 100.0 36 CGCTAATTGA ............................... TTACCGCCAATCCACAGAAATAATAAAATACAAAAT 590798 31 100.0 38 AATACAAAAT ............................... TTTTTAACGAGTGATAAAAGTAATTTACTCGCATTACT 590867 31 100.0 40 TCGCATTACT ............................... TTTTCTTGACTATTGGAACTTTTAGAATTTTTATTATTTT 590938 31 100.0 36 TTATTATTTT ............................... CTTATTCGATACCTCCTCAAGAGACTAAAAATGTAT 591005 31 100.0 36 AAAAATGTAT ............................... TAAAATCACTTAAAGGTATTAACTTTATGTGGTTTG 591072 31 100.0 39 ATGTGGTTTG ............................... TGAATGTGTAATTGAATAATATAATCTATTAAACATAAT 591142 31 100.0 36 TAAACATAAT ............................... GTTGTTATTATCGTTTTTAATTTCTTCTACTGGTTC 591209 31 100.0 40 CTACTGGTTC ............................... TGACATATTCATATTTGTCGAAGAAAGACAAGAAAAAAAT 591280 31 100.0 37 AGAAAAAAAT ............................... AAATATTGTGCAGAACATTGTAAGAAATTTATTTCCC 591348 31 100.0 37 TTTATTTCCC ............................... AGAGAAAAGAGAAATAAATAATTTATCCTAAATAAGA 591416 31 100.0 39 CTAAATAAGA ............................... AGAAGTAATAAATACAAAAAATAGTATATTATGCATAAT 591486 31 100.0 36 TATGCATAAT ............................... CCCTTGTTTTAAGCTCATTACTGCAACACCATCTTC 591553 31 100.0 38 CACCATCTTC ............................... CTTATTTTATCCCCTGCTTTCGCTTTATATTCAAATTC 591622 31 100.0 39 ATTCAAATTC ............................... ACAGGAGTGCTATGGTTTGACAACGTAATTAAATCAGCA 591692 31 100.0 34 TAAATCAGCA ............................... ATATCAATACTATGTCGTCTTTTTCTAATTTCAA 591757 31 100.0 36 CTAATTTCAA ............................... CCATATACCTTATGTAAATACCGATATTGTACCCGA 591824 31 100.0 38 TTGTACCCGA ............................... ATGAATGAAGATTATTATCATCCACTTTTGAATTACAC 591893 31 100.0 41 TGAATTACAC ............................... TAGAGTACATCTGTCAACGACTAACGACGGACTTATGAAAA 591965 31 100.0 39 CTTATGAAAA ............................... CATTCGTAATTTCAAATTATCAATTATATTATAGGAATA 592035 31 100.0 36 TATAGGAATA ............................... GAATTACCATATCGTGAGTATATTTGTTTATGATGA 592102 31 100.0 36 TTTATGATGA ............................... AAGCTTCACAATCCTTAATTTTAAGGTCTGTAATTT 592169 31 100.0 35 TCTGTAATTT ............................... TAATAACATCATAATACTTTCTAAATCGATATCCA 592235 31 100.0 32 TCGATATCCA ............................... ACATCGTGTCCAAATACATCCCAAGCACAAGC 592298 31 100.0 36 AAGCACAAGC ............................... ATATATATATTTTTATTATTCATTTTGCACCTCTTC 592365 31 100.0 37 GCACCTCTTC ............................... TTTGGTGTTAATGTTATATAATGCTCCGTATTTGTAT 592433 31 100.0 38 GTATTTGTAT ............................... TTGATTTGATTATGCAATGCACGTGCTTTATAATATTC 592502 31 100.0 37 TATAATATTC ............................... TGAAAATAATAGCAATTGCTTGTGCCGACAAATTTGA 592570 31 100.0 36 ACAAATTTGA ............................... ACGAATACGATAATGTAGAAACAGAATCCAACCCTG 592637 31 100.0 35 TCCAACCCTG ............................... AATTGAATTTTATATCGAAATTCTCAATGTAGTAA 592703 31 100.0 38 AATGTAGTAA ............................... AAAGCGTCAGGTGTATGTTCTACGCTAAATGTCGTGAA 592772 31 100.0 36 ATGTCGTGAA ............................... TAAATATCGTCCTACATCGTTATGTTTGTCATCAAG 592839 31 100.0 36 TGTCATCAAG ............................... ATAGTGCATACAAAATATATACAAGTATAGACTGAT 592906 31 96.8 35 ATAGACTGAT A.............................. ATTCTTTTATATGATACTATACTCCATCCTATGTA 592972 31 100.0 42 ATCCTATGTA ............................... CAGAATATGTTGGTAAGAAGTTACAAATTAGACAAGCCGTAG 593045 31 100.0 37 CAAGCCGTAG ............................... AACAATATAATGAATACATTGAAGAAATTAAAAACGC 593113 31 100.0 35 TTAAAAACGC ............................... TTTGGAGAAATTGCAGAAAATCTAAACGTCTCAGA 593179 31 100.0 36 ACGTCTCAGA ............................... ATAGATAACAAAGAGGTGCTAATCCCTACTACCAAT 593246 31 100.0 38 TACTACCAAT ............................... TTATTGAACTAATTCAGCTCGGAGATATCGAGCACGTT 593315 31 100.0 36 CGAGCACGTT ............................... TGCAATAACATTATATTATAAAGATAATGTATTATG 593382 31 100.0 34 ATGTATTATG ............................... CATATATGACCTATTAAGGCATAAATACGATGCA 593447 31 100.0 37 ATACGATGCA ............................... AATTTGAACGAAGATTAATTCAACAAAGAGTTAATAG 593515 31 100.0 35 GAGTTAATAG ............................... TTTGACACTTCAAAAGCTGTTCAGTTAGTATCAGT 593581 31 100.0 35 TAGTATCAGT ............................... AGGGGTACCCTATGGATAATGACGAGGTGTAAACT 593647 31 100.0 34 GGTGTAAACT ............................... TTATAAAAGAGGGGTTATAATGTGTAACAATAAC 593712 31 100.0 37 TAACAATAAC ............................... GAAGTTCAGGAAGTTCTGGTTCAAGTGGCTCTTCAGG 593780 31 100.0 35 GCTCTTCAGG ............................... AAAGCAGGAGATAAATTAAGATTATATGCTAAAGC 593846 31 100.0 36 ATGCTAAAGC ............................... TAACATACATCCAATTAAATTCTATTATTCCATATA 593913 31 100.0 37 ATTCCATATA ............................... AGTTATTTGATAATTTAACCGCCCCTTTGAATCAATT 593981 31 100.0 37 TGAATCAATT ............................... AAGACCCTTTTATTATGGGGCTTATGAATGGGTAAGG 594049 31 100.0 39 ATGGGTAAGG ............................... TTGATTTACTGCCTAATAATGATACAATAACGTCATTTA 594119 31 100.0 35 ACGTCATTTA ............................... AAATTACCAAAAGCATATTATAAACTAACGTCAAA 594185 31 100.0 39 TAACGTCAAA ............................... AATTTGCCCTAATTCTATACATTTTAATACGTTCATTAT 594255 31 100.0 CGTTCATTAT ............................... ACGTGTTATA ========== ====== ====== ====== ========== =============================== 172 31 36 GTTTCAAATCTACTATAGTCTTATTTCTAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.97%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [80.0-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [705,342] Score: 0.18/0.18 # # Final direction: F [0.18,0 Confidence: MEDIUM] >NC_014228 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1814463 29 100.0 33 NNNNNNNNNN GCTC.CGC..TG................. TGCTCTGTTGGCCACACCTATCCGGGCTTTTTC 1814525 29 100.0 32 NNNNNNNNNN T............................ ATATGATTAGGCAGAGCGGCAGCCAGCTGGGC 1814586 29 100.0 32 NNNNNNNNNN ............................. TGTTGCTTTTCCATCTACAACATCCATCTGGC 1814647 29 100.0 32 NNNNNNNNNN ............................. ATTGATAAAGGGAAAACAGGAATTATTAAAGG 1814708 29 100.0 33 NNNNNNNNNN ............................. GGAAAATCAGGAACTTCATTAACGCGCGGAATG 1814770 29 100.0 32 NNNNNNNNNN ............................. CCGGCCGCCACCCAGATCATGCTGGATGATGC 1814831 29 100.0 32 NNNNNNNNNN ............................. CACAGTAAATATTAATTTGTACTCATTCTGTA 1814892 29 100.0 32 NNNNNNNNNN ............................. TAACCGCAAAAAACAGCGGGACGGTTCCGTGT 1814953 29 100.0 32 NNNNNNNNNN ............................. GAGTTTTGGGAGTTGTTGATTGCCTGCCTGTG 1815014 29 100.0 32 NNNNNNNNNN ............................. CAGTCCGCGTGATTTACACTATGTGAGAGTTT 1815075 29 100.0 32 NNNNNNNNNN ............................. CATATAGCACAGCCAAACGCTCTAAATTTTCT 1815136 29 100.0 30 NNNNNNNNNN ............................. TGGCCTCTTCGTATTCGCCGGTGGCATTAA 1815195 29 100.0 32 NNNNNNNNNN A............................ CCTGACTTTTTCAACCTGATTAAATGTCATTA 1815256 29 100.0 32 NNNNNNNNNN ............................. TACCCCCTCCACCAGCTCATCAGGAATTTCAA 1815317 29 100.0 32 NNNNNNNNNN ............................. GGCGGCACGTTCGTGCAAACGGGCAACCCGGC 1815378 29 100.0 32 NNNNNNNNNN G............................ AAACCCCTCTACGACGCAAATGCGTTTTGCCC 1815439 29 100.0 32 NNNNNNNNNN ............................. AAATAATTTGAATTTTTGGTCGCAATAGCGGC 1815500 29 100.0 32 NNNNNNNNNN ............................. AACTTTCTAAATCAGAGAGTAAATGCTACACG 1815561 29 100.0 32 NNNNNNNNNN ............................. AACTCAAGACCAAAAGATTTAAATGACATTCT 1815622 29 100.0 32 NNNNNNNNNN ............................. AATTTTTCATCCTCATTGAGTATTTGCAATAG 1815683 29 100.0 32 NNNNNNNNNN ............................. AAAACGGACAGCAACATCCATCTTATCGAATT 1815744 29 100.0 32 NNNNNNNNNN ............................. GCCATTCCGGTCGAACGACTGCGTCGCCCACC 1815805 29 100.0 32 NNNNNNNNNN A............................ TAAGGGATGCTGTTGCAGGAATGACAATCGGG 1815866 29 100.0 32 NNNNNNNNNN ............................. TTTTTGTTTTATTTTCCTAAGCTTAACCTTTG 1815927 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 25 29 32 CGGTTTATCCCCGTACTTACGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-10.20,-10.20] Score: 0/0.37 # Array degeneracy analysis suggestion: R [10-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [70.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [334,301] Score: 0/0.18 # # Final direction: R [0,1.05 Confidence: HIGH] >NC_014307 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1104011 29 100.0 32 NNNNNNNNNN ............................. TGCTGAATGCGGAAGATGATCCGTGTTTTGAG 1104072 29 100.0 32 NNNNNNNNNN ............................. CTTGCCGACCAGTACATCGCCGACAACAGCGG 1104133 29 100.0 32 NNNNNNNNNN ............................. ATGGGGTTCAATTGATCATGTGCGCCCCCGAA 1104194 29 100.0 32 NNNNNNNNNN ............................. GACGGGCCATCTGCCTCGTATGGTAACGAGGG 1104255 29 100.0 32 NNNNNNNNNN ............................. GCCGCCTCAGTCGGAACACCAGTTGCGCCGGT 1104316 29 100.0 32 NNNNNNNNNN ............................. GCCTCTCACTGGCCGAGAGCCGCATAGCATCA 1104377 29 100.0 32 NNNNNNNNNN ............................. GTCAGGAGCTGGCGCTTGACGGCCTTATCGCG 1104438 29 100.0 32 NNNNNNNNNN ............................. CCGATGCCGAAATGATGGGCAAGGTCATGAAC 1104499 29 100.0 32 NNNNNNNNNN ............................. GCTATGTCCAGGGCAACGCCCTTGACGACCCG 1104560 29 100.0 32 NNNNNNNNNN ............................. GCAGGCCACATTCTCAGACTCACAGGGAAAAT 1104621 29 100.0 32 NNNNNNNNNN ............................. CCAGCCTCGATGCCCGAGCCAGCCTTGATGCC 1104682 29 100.0 32 NNNNNNNNNN ............................. ACAGGCGATTGCGCAGAATTCCGCGCGCGTAG 1104743 29 100.0 32 NNNNNNNNNN ............................T GCTGATAGCAGGCGAGCCATGCGGCTTTTGCC 1104804 29 100.0 32 NNNNNNNNNN ............................. CTGAGGCGAGTGACCCACGTACGGGTGCCTGG 1104865 29 100.0 32 NNNNNNNNNN ............................. CCGTCTTCGTAGAGCACACTGAGCGTCTTCGA 1104926 29 100.0 32 NNNNNNNNNN ............................. ATCGGCGAATACCTGTGGCCTCAGTGGTTCAC 1104987 29 100.0 32 NNNNNNNNNN ............................. CCGTATCACCCAGCAGCGTCAGTCCGTCGAAA 1105048 29 100.0 32 NNNNNNNNNN ............................T CCAGCGCACCTGGAGATCGGATCGCATATCGA 1105109 29 100.0 32 NNNNNNNNNN ............................. CCCTATCATCGCTCGCGCGCCGTCGTGGTGAT 1105170 29 100.0 32 NNNNNNNNNN ............................. TCGTCTGGAATTCGTCGCTGAATACAACCGGC 1105231 29 100.0 32 NNNNNNNNNN ............................. TCATCGCAGAGCGATTGCAAGCGGTCCCAAGA 1105292 29 100.0 32 NNNNNNNNNN ............................. GAGATGCTCGGGTGAAGCCTACCGAAATATAC 1105353 29 100.0 32 NNNNNNNNNN ............................. TTGTTGTGCGGCTCGGTGGAGGTTCCCATGCT 1105414 29 100.0 32 NNNNNNNNNN ............................. GGTGGACTGTGCCGGTGGCGGGCTTCCCGCAG 1105475 29 100.0 32 NNNNNNNNNN ............................. AAGCCGATCGCGCACAAGCTCAACACGAACGA 1105536 29 100.0 32 NNNNNNNNNN ............................. TTCGTAGGGGAGACTGAGCAGAACCTGGCCCT 1105597 29 100.0 32 NNNNNNNNNN ............................. CGCGACAGCTACATCATCGTCGCGCAGCTCTC 1105658 29 100.0 32 NNNNNNNNNN ............................. ATCGGCGGCGGCCTGCCTTTCAGCGGGCTCCC 1105719 29 100.0 32 NNNNNNNNNN ............................. GTCACCAGCACGGGTTCGGTAACGATCGTCGA 1105780 29 100.0 32 NNNNNNNNNN ............................. CGTGACGACGGTGTAGAGCAGGGCGGAGGTGA 1105841 29 100.0 32 NNNNNNNNNN ............................. TTCAGCGTCGTCTTCCACTGACGCATTCCCAC 1105902 29 100.0 32 NNNNNNNNNN ............................. TGCTGGATCTGATGGATAGTGCGGAGCGGCAT 1105963 29 100.0 32 NNNNNNNNNN ............................. ATTGCTGCATGCTTCTTCACCAGCGCGGTCGT 1106024 29 100.0 32 NNNNNNNNNN ............................T GCTATCCACTTTCCTTGTTGATGGGTACCTCT 1106085 29 100.0 32 NNNNNNNNNN ............................. CAATTTTTGAGTGAACGATGCCGCTATACCCA 1106146 29 100.0 32 NNNNNNNNNN ............................. CGTTCATCGTTCGGGCGCTGGCCTGCTTTGAC 1106207 29 100.0 32 NNNNNNNNNN ............................. GTATGCGGCGTTGGCGCGCCTTGCGGCTAGGG 1106268 29 100.0 32 NNNNNNNNNN ............................. GAGAGGTTTCGCTTCCTTCGGCTTGTGCATCC 1106329 29 100.0 32 NNNNNNNNNN ............................. ATCTCTGACGCACAGAGAGCCATGGCCGGCGC 1106390 29 100.0 32 NNNNNNNNNN ............................. TCGCCAACACCTCGCGACGAAAACATCCGCAA 1106451 29 100.0 32 NNNNNNNNNN ............................. CTTTCGTTCAATTCTCGGATTCGACTAAACAA 1106512 29 100.0 32 NNNNNNNNNN ............................. ACGATGTGGTGTTTGTTGGCTCGATGAAGCTG 1106573 29 100.0 32 NNNNNNNNNN ............................. GACCCGGCGTTCAACTACAAGGCGCTGCCGTA 1106634 29 100.0 32 NNNNNNNNNN ............................T TCTGGGGTCATTGCGCCTCCCGCGCGTCACGC 1106695 29 100.0 32 NNNNNNNNNN ............................. CGGTGATTGGCAGCAAGAGCGAGATCGCCGCT 1106756 29 100.0 32 NNNNNNNNNN ............................. GTGAAACGCTCGGCGTGCAGACGACAAGCCGC 1106817 29 100.0 32 NNNNNNNNNN ............................. ATTGTCGATCAACCGATCAAGCTGGCGCAAAG 1106878 29 100.0 32 NNNNNNNNNN ............................. GAATCCGAGGAATACCTGAGAGACTATAGGAA 1106939 29 100.0 32 NNNNNNNNNN ............................. CCTACCTGGTCGGCCTAGCCGTGACCGACAAC 1107000 29 100.0 32 NNNNNNNNNN ............................. GTCAGGTAGCTGTGAACGTAGGTCTTCATGGT 1107061 29 100.0 32 NNNNNNNNNN ............................. TACGCCGCCAAGGTGCGCGAGTCCATGGACGC 1107122 29 100.0 32 NNNNNNNNNN ............................. CCGTACTTCTCCATCACCGGAGCGATCGAGGC 1107183 29 100.0 32 NNNNNNNNNN ............................. AGGAGGCGCGAACTCGCCTCGAGCGCAGCCAG 1107244 29 100.0 32 NNNNNNNNNN ............................. ACGACTGTATCTATGGCCAGTTCGATCGACCA 1107305 29 100.0 32 NNNNNNNNNN ............................. CCATCGGCGGCCCGGCCGCGGTGGCGGGAGGT 1107366 29 100.0 32 NNNNNNNNNN ................T............ CGCGCCAGGTCGCAAGAGTTTCTACGGGCGGC 1107427 29 100.0 32 NNNNNNNNNN ................T............ ATGAGTGGGTTACCCGTCGCGGCGGCTTTTAT 1107488 29 100.0 32 NNNNNNNNNN ........T...TAC.........C..T. CCCGGCGCCGGCGGGCTGACCGGTGTGAGCCT 1107549 29 100.0 1 NNNNNNNNNN .........CGCA.ATGC...GATGCG.C NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 59 29 32 GTGTTCCCCGCGCCTGCGGGGATGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [2-22] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [61.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [70,157] Score: 0.18/0.18 # # Final direction: F [1.18,0.55 Confidence: MEDIUM] >NC_014228 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3577918 29 100.0 32 TCAGGCGTTC ............................. TACTCAAAGTAAGTCAGTCAAAAACAGGCTAT 3577979 29 100.0 32 AACAGGCTAT ............................. TGGTCACATCTTGGAAAGCGCGGAACCTGAGG 3578040 29 100.0 32 GAACCTGAGG ............................. TAGCTTGCGCCGTTCTGACCGTTTGAGTAACA 3578101 29 100.0 33 TTGAGTAACA ............................. CTCAAAGCTCAAATCATTTCATTACGTATCATC 3578163 29 96.6 32 ACGTATCATC A............................ AGCCGCAGAATCAAGCTGTGCAATATCATAGA 3578224 29 100.0 32 ATATCATAGA ............................. AGTCTCGCCCAGTTCTTCGGTGTCCTCATTGG 3578285 29 100.0 32 TCCTCATTGG ............................. GATATAGCATAGCTGATGAGTTTCTATGTTTA 3578346 29 100.0 32 TCTATGTTTA ............................. TTCAATATCTTTACCGCCTGTGGGCGCATAGG 3578407 29 100.0 32 GGCGCATAGG ............................. CGTTTTTTTCTAAAATGATTTTGTCTATATCA 3578468 29 100.0 32 GTCTATATCA ............................. TATTCGGTTAATGCAATCTCCCGCCGCGTGGC 3578529 29 100.0 33 GCCGCGTGGC ............................. AACATCAAATGAAATATTAACCTGTGAATTTTT 3578591 29 100.0 32 GTGAATTTTT ............................. CATTTTAGAAAAAAACGTAGATGGTGCATCAC 3578652 29 100.0 32 GGTGCATCAC ............................. ACCCAATGAAGCCAGTAATAAATATCGGCAGG 3578713 29 100.0 32 TATCGGCAGG ............................. TGATAACTCAAGGGAGTGGAGCTGTATTTTAT 3578774 29 100.0 32 TGTATTTTAT ............................. AGCTGAAAGCGTTTGAACCGTCAAAAATCACC 3578835 29 100.0 32 AAAAATCACC ............................. AACAGTCTGCCCCAGCAGATTTTTCGCTGTGC 3578896 29 100.0 32 TTCGCTGTGC ............................. CCTTTGAGAACGTGCGGGGCAAACTCATCGTT 3578957 29 100.0 32 ACTCATCGTT ............................. ATCATTGCCTGAACAGTTTTTCGATAACAATC 3579018 29 100.0 32 GATAACAATC ............................. AGCTTTTCATTGCCTATTTTCAAATAAAATGG 3579079 29 100.0 AATAAAATGG ............................. TCTAATTTTA ========== ====== ====== ====== ========== ============================= 20 29 32 CGGTTTATCCCCGTACTTACGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-10.20,-10.20] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [51.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [370,566] Score: 0/0.18 # # Final direction: R [0,1.05 Confidence: HIGH] >NC_014228 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3589391 29 100.0 32 TATATTTAGG ............................. AAAGTTTCAGCACCTATTAACGGAATTATTCT 3589452 29 100.0 32 GAATTATTCT ............................. AGCAGCTATCAGCGGGTATGAGGCAGGCGAGA 3589513 29 100.0 32 GCAGGCGAGA ............................. AATCCATTGTTGATAATGGCGCTGATTTCAAA 3589574 29 100.0 32 TGATTTCAAA ............................. TCGGCGATTTCTGCGGGGGTGGCACTCTATTG 3589635 29 96.6 32 CACTCTATTG ............................C CGCGACAGAGCGATTACACTGAGGGAGGGGGC 3589696 29 100.0 32 GGGAGGGGGC ............................. AATGACTCACCTCAGCTTTGCCATTACAGGTC 3589757 29 100.0 32 ATTACAGGTC ............................. TGGCCTGTGAAAGTGGATGCAGGAAAAACTAA 3589818 29 100.0 32 GAAAAACTAA ............................. AACATATTCAGAAAATGGCATGTCAATTATCA 3589879 29 100.0 32 TCAATTATCA ............................. ATTTTTCGCCTGTACGTCGTAAAACTGCTCAA 3589940 29 100.0 32 AACTGCTCAA ............................. GGATAGATCCTCGTAACTTGGATGACCCCACA 3590001 29 100.0 TGACCCCACA ............................. GTAACGCAGA ========== ====== ====== ====== ========== ============================= 11 29 32 GAGGTCTCCGTAGGTACGGAGATAAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-8.10,-8.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [85,64] Score: 0/0.18 # # Final direction: F [0.64,0 Confidence: HIGH] >NC_014246 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 303900 28 100.0 33 NNNNNNNNNN ..A.T................A...... CAGACAAACCAGTGGGAGCAATCCGAACCCCTA 303961 28 100.0 33 NNNNNNNNNN ............................ TGAGAATTATCCCTGTTCAAGACGCGACCCTCA 304022 28 100.0 33 NNNNNNNNNN .T.......................... TCTTGAATATACATTCGCACGGTGTCTTGCTCG 304083 28 100.0 33 NNNNNNNNNN ............................ ACACCCACGCTTTCCAGTTCGTCGAGAACCGCA 304144 28 100.0 33 NNNNNNNNNN ............................ CACACGGTGGTTTTGCAATAACCGCGCTTGCCC 304205 28 100.0 34 NNNNNNNNNN ............................ TACGGAAAAAGTGGCGTTCCGTTCTGTGCAATGG 304267 28 100.0 33 NNNNNNNNNN ............................ CGCTTCAACAAAATCTTTTGCATCGATAAGCGC 304328 28 100.0 33 NNNNNNNNNN ............................ ACCGCGCCCTTGCGTAGCGCTATAACCCGTTTG 304389 28 100.0 33 NNNNNNNNNN ............................ GCCCTCTGGTGGTGGATAAACTTCCCCGCTTAC 304450 28 100.0 33 NNNNNNNNNN ............................ CAGACCCACGAATCAAAGCCTGCTCAAAATAGG 304511 28 100.0 33 NNNNNNNNNN ............................ TCGATTCTATTTTGAGACTCTGGAGAAGTGGGG 304572 28 100.0 33 NNNNNNNNNN ............................ CCTGGCGATGTCGAACGCGACCTGGGCTTCGGG 304633 28 100.0 33 NNNNNNNNNN ............................ TCCAGCTGCAGCTGGTTACCGCCGGCGGCGATA 304694 28 100.0 33 NNNNNNNNNN ............................ TAGGTTTTCCTGTATTCGTGGTAGGCGTTGGGG 304755 28 100.0 33 NNNNNNNNNN ............................ TAGATTGCCCCGTCGGGCTCTCGCATTAACATG 304816 28 100.0 33 NNNNNNNNNN ............................ GATAAGCGACTGAGCAAACGTTTTCAACGCACG 304877 28 100.0 33 NNNNNNNNNN ............................ GATGTGGAACAGGCTGAGAATCTGATTTGGATG 304938 28 100.0 33 NNNNNNNNNN ............................ TCCGCGTTAAACAAATCTTCCCATGTGCAAATA 304999 28 100.0 33 NNNNNNNNNN ............................ GGTCTGATGATGAGGTGAAAGTCCCTGTCCGGG 305060 28 100.0 33 NNNNNNNNNN ............................ CACCCCGCGACGCTATGGCTAAAGCCGGTGAGC 305121 28 100.0 33 NNNNNNNNNN ............................ TGGGCAATACCAGCACCAAAACAGCCACCGTTG 305182 28 100.0 33 NNNNNNNNNN ............................ TAACTTTGCACGTCAGCAGCGCTTTAGGCAATC 305243 28 100.0 34 NNNNNNNNNN ............................ GAAACCACCGAATACGAATTCGTACTGCGACGCC 305305 28 100.0 33 NNNNNNNNNN ............................ TCTGGCTTCGATTAGTTGTCGGTTGCGGGCGTG 305366 28 100.0 33 NNNNNNNNNN ............................ ACCCGGTTGGCAATTCTTCACCAAACGGAGACG 305427 28 100.0 33 NNNNNNNNNN ............................ CTAGGTATCAGCCTCACCGAGGCTGTAGAGGTA 305488 28 100.0 33 NNNNNNNNNN ............................ AAGAACATGGCGCATTATCTGCACGTGTCCAGG 305549 28 100.0 33 NNNNNNNNNN ............................ CAAGGCGTTTCTTCCATTTCTCAGCCAAGAACA 305610 28 100.0 33 NNNNNNNNNN ............................ TTGAGCTTTTAGAGAACCAGGTACGGGCTGCTA 305671 28 100.0 33 NNNNNNNNNN ............................ CGCGGTCGCAGCCTGGGTTGAATCCCTGCCGTG 305732 28 100.0 33 NNNNNNNNNN ............................ GTAAGGGTTTTGGATCCCGCTGGCTCATAATCA 305793 28 100.0 33 NNNNNNNNNN ............................ CAAAGCGCCCTCGTTATCGTTTACCCGCTCGGA 305854 28 100.0 33 NNNNNNNNNN ............................ ACGAACGAAACCGCGGTACAGGCAGGCAGAAGG 305915 28 100.0 33 NNNNNNNNNN ............................ ACCGCTTACCGCACCTACCGGGTTTGAGAGGAC 305976 28 100.0 33 NNNNNNNNNN ............................ TAGGTTGCCGGAGCGTCCGGGGATAGAGATTTG 306037 28 100.0 33 NNNNNNNNNN ............................ AGAAGGAATGAAAACATTATCCGGCGCTGAGCG 306098 28 100.0 33 NNNNNNNNNN ............................ CTCGCCCGTATAGTTCGGGTACGGATACCCCCG 306159 28 100.0 33 NNNNNNNNNN ............................ GTACAGGCGGGGGGTGACGCAGCCGCGCTGATG 306220 28 100.0 33 NNNNNNNNNN ............................ CATAGCCATAGCCGTGAAAACGTTCGCGGGCTG 306281 28 100.0 33 NNNNNNNNNN ............................ ACTGCCATCACGCAGCCCCACCCCCCAGCCGGG 306342 28 100.0 33 NNNNNNNNNN ............................ GGGATAAGTACATCGGCGGTGGCATGACGCAGA 306403 28 100.0 33 NNNNNNNNNN ............................ TCGACATTATGCGGGATAAAAAGGTTAACCGTG 306464 28 100.0 33 NNNNNNNNNN ............................ TTTCCTATTGGAGTGATAGGGAGACAGTATGAG 306525 28 100.0 33 NNNNNNNNNN ............................ AGGGTCGAGGGCTCCCGCCCAGATTGGTAGTAG 306586 28 100.0 33 NNNNNNNNNN ............................ ACATCGCCGGCGCCACATTTCACCAAAGCGTGC 306647 28 100.0 33 NNNNNNNNNN ............................ CCGCCGGCGCCGAAGGCGCGGCGCGCCAAATTA 306708 28 100.0 33 NNNNNNNNNN ............................ TCTTGTGAGCCGGTCTGCAGCTCTCTAGCGTGG 306769 28 100.0 33 NNNNNNNNNN ............................ AGAGAATTAACCATTTATCCCGGCGTGTCGATG 306830 28 100.0 33 NNNNNNNNNN ............................ GTGCTACCGTCGGTGCTGATGGCGAGGGTGTGG 306891 28 100.0 33 NNNNNNNNNN ............................ CTTCTACCATCCAGCGGTTTATCTGCTCGGCGG 306952 28 100.0 33 NNNNNNNNNN ............................ CCTTTTCCCCGTTTCGTTGGTATTTAGCCGTTT 307013 28 100.0 33 NNNNNNNNNN ............................ TCTTTATTACCTCATGGAACACCATGAAACAAG 307074 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 53 28 33 GGCTCATCCCCGCGAGTGCGGGGACCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [4,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [36.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [185,135] Score: 0/0.18 # # Final direction: R [0.37,0.68 Confidence: LOW] >NC_014304 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================== ====== 85363 21 100.0 37 NNNNNNNNNN .......AAG........A.. AGCCAGCAGGCGCGGTCGTGCGCAGAAAGATATCGAG 85421 21 100.0 40 NNNNNNNNNN ..................... CAGGAGTGAGCGGCCGGCCAGTCAGCTGCGCGCCGTCATA 85482 21 100.0 37 NNNNNNNNNN ........AG........... AACCGGCGGGCACGGCCGGGCGCAGAATGATATCGAG 85540 21 100.0 40 NNNNNNNNNN ..................... CAGGAGTGAGCGGCCACCCAGTCAGCTGCGCGCCTTCATA 85601 21 100.0 37 NNNNNNNNNN ....................T AACCCGTGGGCACGGCCGGGTGCAGAATGGCATTGTG 85659 21 100.0 40 NNNNNNNNNN ......C.............. CAGAAGCGAGCGGCTGGCCAGTCAGCCGTGCGCCGTCATA 85720 21 100.0 37 NNNNNNNNNN ........AG........... AACCGGCGGGCACGGCCGGGCGCAGAATGGCATTGAG 85778 21 100.0 40 NNNNNNNNNN ..................... CAGGAGTGAGCGGCCACCCAGTCAGCTGCGCGCCTTCATA 85839 21 100.0 37 NNNNNNNNNN ....................T AACCCGTGGGCACGGCCGGGTGCAGAATGGCATTGTG 85897 21 100.0 40 NNNNNNNNNN ..................... CAGAAGCGAGCGGCTGGCCAGTCAGCCGTGCGCCGTCATA 85958 21 100.0 37 NNNNNNNNNN ........AG........... AACCGGCGAGCACGGCCGGGCGCAGAATGGCATTGAG 86016 21 100.0 1 NNNNNNNNNN ..................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================== 12 21 38 TGGGAATCCCCCCTACTTTTG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [307,41] Score: 0.18/0.18 # # Final direction: R [0.18,0.78 Confidence: MEDIUM] >NC_014307 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1094183 28 100.0 33 TGCGGTAAGT ............................ GTCGAGGCTCAAAAACATCGACAAGGTAAAGGC 1094244 28 100.0 33 AGGTAAAGGC ............................ GCGTTCGCGGGCACGCATCATTCCGTCGTTGGC 1094305 28 100.0 32 CGTCGTTGGC ............................ TGTGCGCAGCCGGCGCGACCGTGACGAGCCCG 1094365 28 100.0 33 GACGAGCCCG ............................ GAAGATTTTCGCAAAGCGATCGACGCCGCCACA 1094426 28 96.4 33 CGCCGCCACA ....................G....... GTTCGCAAAACCGTGGAGATGAGTCCCGCATGA 1094487 28 92.9 TCCCGCATGA ....................G......A CCGCAACAGCTAGACGGCGCCAGCGGCACCGTTACGAGTTCCCTGA ========== ====== ====== ====== ========== ============================ 6 28 32 GTGTGTTCCCCGCGTGGGCGAGGATGAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.60,-9.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [58.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [90,331] Score: 0.18/0.18 # # Final direction: R [0.68,0.92 Confidence: LOW] >NC_014315 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3072313 28 100.0 32 NNNNNNNNNN ............................ TTTGGGCGAGATGTTGTGGGCCGGTTGCCAAG 3072373 28 100.0 32 NNNNNNNNNN ............................ AGTAAGCAGAAGTCGAACGGGTCATTGCACTG 3072433 28 100.0 32 NNNNNNNNNN ............................ CCTATCTTGACGTTAGAGAGTATGTCTGGACG 3072493 28 100.0 32 NNNNNNNNNN ............................ ACGATGGGCAGGTTACAAGCAATGCGGTTAAA 3072553 28 100.0 32 NNNNNNNNNN ..................A.C....... AGTATGTTTAATTAACTGCTTTTACATTAGAT 3072613 28 100.0 32 NNNNNNNNNN ......T...........A.C....... CTTAGGACAGCAGCGAATGGACGCAAAACAGA 3072673 28 100.0 32 NNNNNNNNNN ......T...........A.C....... CATCAGTTGCCGGAGTTATTTCATGTATTTCT 3072733 28 100.0 32 NNNNNNNNNN ............................ TAGATTTCTTTCCGTTGCAGCCATTTTACGGA 3072793 28 100.0 1 NNNNNNNNNN ......T...........A..AA..TT. NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 9 28 32 GTTCACCGCCGCACAGGCGGTTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [7,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-9.80,-9.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [133,1148] Score: 0.18/0.18 # # Final direction: F [1.42,0.18 Confidence: HIGH] >NC_014318 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================== ====== 6436806 18 100.0 42 ACGTTTTCCC .................. CTGCCCGTGGCGGAACCTGATCGTCACCAAGCCGCTTCCCAT 6436866 18 94.4 43 CGCTTCCCAT ................G. CGCGCCTTCGTCCCAGCTGGCCGGCTCGACGATATTTTCCCCG 6436927 18 94.4 40 ATTTTCCCCG ............G..... CAGGGAGATCGACACGTCGGACAGCGTTTCGCGGTTCCCG 6436985 18 100.0 42 GCGGTTCCCG .................. CGGAAGCCGGTTGAGCTTCGCGCCGCACCGTCCGTTTGCCCG 6437045 18 94.4 CGTTTGCCCG ............C..... GCAGGCCGAC ========== ====== ====== ====== ========== ================== 5 18 41 CGCACGCGGGGCTGGTCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [33.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [1138,762] Score: 0/0.18 # # Final direction: F [0.68,0.37 Confidence: LOW] >NC_014318 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 6438560 28 100.0 33 NNNNNNNNNN ........T................... GGGAGCACTCGCATGACGACCACGGAGCCGGCG 6438621 28 100.0 33 NNNNNNNNNN ............................ CTGGTTGATCCGGATGTCCCAGTCGTCCACCGC 6438682 28 100.0 33 NNNNNNNNNN ............................ CACGGTGGCGGTGGCCTGCTGATACTGGGCGTC 6438743 28 100.0 33 NNNNNNNNNN ............................ AGACGGTTGGGGCAACCTGAAGGCGGCCGGCCT 6438804 28 100.0 1 NNNNNNNNNN ..C..................GCTAGTA NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 5 28 33 GTTGTCCCCGCACGCGCGGGGCTGGTCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-12.70,-13.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [355,198] Score: 0/0.18 # # Final direction: R [0.41,0.74 Confidence: LOW] >NC_014318 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 6441372 28 100.0 33 NNNNNNNNNN ..TA.......ACG.............. CACGATGCCGCGCTCGACGAACACCTCGTTCCC 6441433 28 100.0 33 NNNNNNNNNN ............................ CTCGGCCAGCACCCGGCGGAGGTTCCGGATACT 6441494 28 100.0 33 NNNNNNNNNN .........A.................. GATCGATTCGCTGAGGACCTCCGGCAGCACGAT 6441555 28 100.0 33 NNNNNNNNNN ............C..CT........... GGTGAAGGGCCTCTCCCCGGCCGGGCAGCGGTA 6441616 28 100.0 33 NNNNNNNNNN ............................ CCACACCGGCAAGCCCGAGGCGATCCTCACGCA 6441677 28 100.0 33 NNNNNNNNNN ........T....T.............. CGACACGACGGCGAGCCGGTCGTCGCGTTCCTT 6441738 28 100.0 1 NNNNNNNNNN .......................CC... NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 7 28 33 GTCGTCCCCGCGTACGCGGGGCTGGTCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-12.70,-13.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [5-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [35.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [558,502] Score: 0/0.18 # # Final direction: R [0.68,0.74 Confidence: LOW] >NC_014334 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2126075 36 100.0 30 NNNNNNNNNN AGAA..T.....G....................... TGTCGGCTTTTGGATAACACCAAATCGTCA 2126141 36 100.0 30 NNNNNNNNNN .................................... TCCATGGTAAAAACCTCCTATTATTTTGTT 2126207 36 100.0 30 NNNNNNNNNN .................................... ACGACATAGAGGTTATTCATTCCATTTCAC 2126273 36 100.0 30 NNNNNNNNNN .................................... TGTTGCAATCGGTGAAAGTATCGCGATTGC 2126339 36 100.0 30 NNNNNNNNNN .................................... GCGACAATCTCCCGACTGATGATATTGGCC 2126405 36 100.0 30 NNNNNNNNNN .................................... CGATGTGTTCTTGTCAAAACATTTTTTGCG 2126471 36 100.0 30 NNNNNNNNNN .................................... AACATATTGATCAGCCTTTCTTCAACGATC 2126537 36 100.0 30 NNNNNNNNNN .................................... CCATAAAGTTGCTAATTCTAGAAATATTTT 2126603 36 100.0 30 NNNNNNNNNN .................................... TGTCAGCCATAAGCGTGTTAGCCGCTACGA 2126669 36 100.0 30 NNNNNNNNNN .................................... CGAGACCAACACCAGCGCAAGCGAACGCTT 2126735 36 100.0 30 NNNNNNNNNN .................................... GCGCGAGTTGATCGCAACGGAAGGCAGTTT 2126801 36 100.0 30 NNNNNNNNNN .................................... GCCAGTTGTTTAATGGATAAGCCTCTGATA 2126867 36 100.0 30 NNNNNNNNNN .................................... TTCGTCTTTAAGCGGTGCTAACCAATTTGG 2126933 36 100.0 30 NNNNNNNNNN .................................... TTCGTTGTTTCGTTAATATCTTTATCATGC 2126999 36 100.0 30 NNNNNNNNNN .................................... TTGCCATTTTTAAAGCAATGCGCACTTACA 2127065 36 100.0 30 NNNNNNNNNN .................................... GAAATACTTGTCTCATTTTTTGTGTATGCA 2127131 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 17 36 30 GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-2.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [282,26] Score: 0.18/0.18 # # Final direction: R [0.45,0.78 Confidence: LOW] >NC_014355 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1475361 29 100.0 32 TGTAGGAAGT ............................. GAGGATACCCAGATGGCGAGAACACTACTCAC 1475422 29 100.0 32 CACTACTCAC ............................. GAGATGTCGGTTTTAATGCGCGTCGTCACCGT 1475483 29 100.0 32 TCGTCACCGT ............................. CAGGGGTCGAGGTATCCGAGCCGGACCAATCC 1475544 29 100.0 32 GGACCAATCC ............................. CTGGTAGTCGCTGGCGAGATCCCGAAGGTTAG 1475605 29 100.0 32 CGAAGGTTAG ............................. TTGTCTGTGATGAATACACATCCGATAGGAGT 1475666 29 100.0 32 CGATAGGAGT ............................. GTCATTGATTTTGCAGGTGCCACGTGGGAATT 1475727 29 100.0 32 CGTGGGAATT ............................. TCACAGATGTAGATGGTTTGTGAGGCGGTGAG 1475788 29 100.0 32 AGGCGGTGAG ............................. CCAGACAGGAAATCTCTAGTGGATTCACTGTC 1475849 29 100.0 33 ATTCACTGTC ............................. TACCTCCTTCTTGCCCGGAACGTCCACGCCACG 1475911 29 100.0 32 CCACGCCACG ............................. CAATTTCAGGATACGGAACCTTAATCAAGCGA 1475972 29 100.0 32 AATCAAGCGA ............................. ACGGGGGCGCCGCCGCGAATATCGCGACGCTC 1476033 29 100.0 33 CGCGACGCTC ............................. CGGCATGTGGGAGTTGAACGCCCGCCGATTCGC 1476095 29 100.0 32 GCCGATTCGC ............................. GCTACGTCCGGGTTCCGATCTATTGCGTATCA 1476156 29 100.0 32 TTGCGTATCA ............................. AAATAGCATGTTCTCTCTCGCCACAGCAGAAA 1476217 29 100.0 32 ACAGCAGAAA ............................. CCATAGAAAAAGAGACCGGGAAACCGCTGGAC 1476278 29 100.0 32 ACCGCTGGAC ............................. AATTTGTAGGACTTCGGGTTGACGTTGAGCAC 1476339 29 100.0 32 CGTTGAGCAC ............................. ATGACGGAGGGCCATTTGAATATCCCGTATAT 1476400 29 100.0 32 TCCCGTATAT ............................. GAAACGGTTCTTCCGCGTACCCCTTCGCCTTT 1476461 29 100.0 32 CTTCGCCTTT ............................. GGCGAGACGGAATCGGAACCGTCGTCCGTGGT 1476522 29 100.0 32 CGTCCGTGGT ............................. AGCGGGACGCATGGGGTTGCGGCTGGCAGCAT 1476583 29 100.0 33 CTGGCAGCAT ............................. AACTGATGCGCGTGCCGACTTCTGATCTCGTGC 1476645 29 100.0 33 GATCTCGTGC ............................. CGCGAATGCGGTACTGTGCAAATGGGTGCCTGT 1476707 29 100.0 32 GGGTGCCTGT ............................. GAAGAGCAGTTTCTCTCTGAGGGCGATGCTGT 1476768 29 100.0 32 GCGATGCTGT ............................. CAACTTCGCCGGATCCTCGTCTTGGGTGACGC 1476829 29 100.0 32 TGGGTGACGC ............................. ACCGGTAGGGCCTGCTCCGGAGCCCACCGTTT 1476890 29 100.0 32 CCCACCGTTT ............................. GCTAGCCGTAAATGAGTTGACATACGGGGTGT 1476951 29 96.6 32 TACGGGGTGT ....G........................ CCCCCAGAAGAGCCGCGTCTGTGGCGCGAAGA 1477012 29 100.0 32 GGCGCGAAGA ............................. AGTCCTTTCGGGTTGTTGGTTATACAGGAATC 1477073 29 100.0 TACAGGAATC ............................. CTTCTTGCCA ========== ====== ====== ====== ========== ============================= 29 29 32 GTGTTCCCCGCGCGAGTGGGGATGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-11.50,-6.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [79,837] Score: 0.18/0.18 # # Final direction: F [1.05,0.55 Confidence: LOW] >NC_014363 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1403835 36 97.2 30 GTGGAAGCGA ...............G.................... GCATCGCAGACCCCGTGAGCACGTTTCGCG 1403901 36 100.0 29 ACGTTTCGCG .................................... GCCTATGGGAGGACTAACGCATGGCAATT 1403966 36 100.0 29 CATGGCAATT .................................... GCCTATGGGAGGACTAACGCATGGCAATT 1404031 36 100.0 30 CATGGCAATT .................................... CCTCGTCCAAACGTCGCTTCGTCCATCCGA 1404097 36 100.0 30 GTCCATCCGA .................................... ACCTGGCGGAGGCCATCGCCACCGGCGGCA 1404163 36 100.0 30 ACCGGCGGCA .................................... ATGAAGGATTACACGCTTGGTGCGGGTGAA 1404229 36 100.0 30 TGCGGGTGAA .................................... CCCGAGTCTGGGCTTGTCGACAAGTCGGCG 1404295 36 100.0 30 CAAGTCGGCG .................................... CGAATGCGACGCTCATGTGCGTGACTCCGA 1404361 36 100.0 30 GTGACTCCGA .................................... CCATATCACGACACCATTCCTGACGAGAGG 1404427 36 100.0 30 TGACGAGAGG .................................... CCCGAGTCTGGGCTTGTCGACAAGTCGGCG 1404493 36 100.0 30 CAAGTCGGCG .................................... CGAATGCGACGCTCATGTGCGTGACTCCGA 1404559 36 100.0 30 GTGACTCCGA .................................... ACCTCTCGGAGGGTCACCGCGAGTTCGCCT 1404625 36 100.0 30 GAGTTCGCCT .................................... CCATATCACGACACCATTCCTGACGAGAGG 1404691 36 100.0 30 TGACGAGAGG .................................... TGCGAGGTGGTCAGGTGCCGGGATTGCGTA 1404757 36 100.0 30 GGATTGCGTA .................................... CCCGGATTGAGCATGAGGGCGTCGGTACGG 1404823 36 100.0 29 GTCGGTACGG .................................... CCGTCCGTCTTCATCCCACGGCTCTCGAG 1404888 36 100.0 30 GGCTCTCGAG .................................... TCGCGCGGCGGATGATGGAGTCGGCTATGC 1404954 36 100.0 30 TCGGCTATGC .................................... GCTAACAGATATTATCTGTAAACAGATGGG 1405020 36 100.0 29 AACAGATGGG .................................... CCATGGAAGTACCTCCCATTGTCAAGAGA 1405085 36 100.0 30 TGTCAAGAGA .................................... TCCCCTATATCCCGAAGTCGAAGGGGACCG 1405151 36 100.0 30 AAGGGGACCG .................................... CGCGAAGCCTAGCAGGCGTCTGGTCGATGC 1405217 36 100.0 30 TGGTCGATGC .................................... TGATATACGAATCGATGGTCGAGGCCGCAG 1405283 36 100.0 30 GAGGCCGCAG .................................... CTTGCCCTTGGTGTTGACGCGAATGACGTG 1405349 36 100.0 30 GAATGACGTG .................................... TCGTTGCCGCGAGGGTAATCAGGAAGTTCA 1405415 36 100.0 30 AGGAAGTTCA .................................... GCCGCGCTGCTGCGCCACCTCGTCCACCTT 1405481 36 100.0 CGTCCACCTT .................................... AAAGGTCCGC ========== ====== ====== ====== ========== ==================================== 26 36 29 GTTTGATTACCAGTCAAAACGACACTGCCCCAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [50,385] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_014363 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 1403851 20 100.0 46 NNNNNNNNNN .................... GCATCGCAGACCCCGTGAGCACGTTTCGCGGTTTGATTACCAGTCA 1403917 20 100.0 45 NNNNNNNNNN .................... GCCTATGGGAGGACTAACGCATGGCAATTGTTTGATTACCAGTCA 1403982 20 100.0 45 NNNNNNNNNN .................... GCCTATGGGAGGACTAACGCATGGCAATTGTTTGATTACCAGTCA 1404047 20 100.0 46 NNNNNNNNNN .................... CCTCGTCCAAACGTCGCTTCGTCCATCCGAGTTTGATTACCAGTCA 1404113 20 100.0 46 NNNNNNNNNN .................... ACCTGGCGGAGGCCATCGCCACCGGCGGCAGTTTGATTACCAGTCA 1404179 20 100.0 46 NNNNNNNNNN .................... ATGAAGGATTACACGCTTGGTGCGGGTGAAGTTTGATTACCAGTCA 1404245 20 100.0 46 NNNNNNNNNN .................... CCCGAGTCTGGGCTTGTCGACAAGTCGGCGGTTTGATTACCAGTCA 1404311 20 100.0 46 NNNNNNNNNN .................... CGAATGCGACGCTCATGTGCGTGACTCCGAGTTTGATTACCAGTCA 1404377 20 100.0 46 NNNNNNNNNN .................... CCATATCACGACACCATTCCTGACGAGAGGGTTTGATTACCAGTCA 1404443 20 100.0 46 NNNNNNNNNN .................... CCCGAGTCTGGGCTTGTCGACAAGTCGGCGGTTTGATTACCAGTCA 1404509 20 100.0 46 NNNNNNNNNN .................... CGAATGCGACGCTCATGTGCGTGACTCCGAGTTTGATTACCAGTCA 1404575 20 100.0 46 NNNNNNNNNN .................... ACCTCTCGGAGGGTCACCGCGAGTTCGCCTGTTTGATTACCAGTCA 1404641 20 100.0 46 NNNNNNNNNN .................... CCATATCACGACACCATTCCTGACGAGAGGGTTTGATTACCAGTCA 1404707 20 100.0 46 NNNNNNNNNN .................... TGCGAGGTGGTCAGGTGCCGGGATTGCGTAGTTTGATTACCAGTCA 1404773 20 100.0 46 NNNNNNNNNN .................... CCCGGATTGAGCATGAGGGCGTCGGTACGGGTTTGATTACCAGTCA 1404839 20 100.0 45 NNNNNNNNNN .................... CCGTCCGTCTTCATCCCACGGCTCTCGAGGTTTGATTACCAGTCA 1404904 20 100.0 46 NNNNNNNNNN .................... TCGCGCGGCGGATGATGGAGTCGGCTATGCGTTTGATTACCAGTCA 1404970 20 100.0 46 NNNNNNNNNN .................... GCTAACAGATATTATCTGTAAACAGATGGGGTTTGATTACCAGTCA 1405036 20 100.0 45 NNNNNNNNNN .................... CCATGGAAGTACCTCCCATTGTCAAGAGAGTTTGATTACCAGTCA 1405101 20 100.0 46 NNNNNNNNNN .................... TCCCCTATATCCCGAAGTCGAAGGGGACCGGTTTGATTACCAGTCA 1405167 20 100.0 46 NNNNNNNNNN .................... CGCGAAGCCTAGCAGGCGTCTGGTCGATGCGTTTGATTACCAGTCA 1405233 20 100.0 46 NNNNNNNNNN .................... TGATATACGAATCGATGGTCGAGGCCGCAGGTTTGATTACCAGTCA 1405299 20 100.0 46 NNNNNNNNNN .................... CTTGCCCTTGGTGTTGACGCGAATGACGTGGTTTGATTACCAGTCA 1405365 20 100.0 46 NNNNNNNNNN .................... TCGTTGCCGCGAGGGTAATCAGGAAGTTCAGTTTGATTACCAGTCA 1405431 20 100.0 46 NNNNNNNNNN .................... GCCGCGCTGCTGCGCCACCTCGTCCACCTTGTTTGATTACCAGTCA 1405497 20 100.0 46 NNNNNNNNNN .................... AAAGGTCCGCCTTGCCAAGGCTAGACATCGGTTTGATTACCAGTCA 1405563 20 100.0 45 NNNNNNNNNN .................... TGCGATATTAGACAGGAGGTGAGGTGATGGTTTGATTACCAGTCA 1405628 20 100.0 46 NNNNNNNNNN .................... AGGAATGTCACCCATCTTATCCATCTCGGAGTTTGATTACCAGTCA 1405694 20 100.0 46 NNNNNNNNNN .................... CGTTGAAGCTCCTGCCCGACGCCGCCGCGAGTTTGATTACCAGTCA 1405760 20 100.0 46 NNNNNNNNNN .................... CGCGATATAATTCCTATCATCCCCTGCGTGGTTTGATTACCAGTCA 1405826 20 100.0 1 NNNNNNNNNN .................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================== 31 20 45 AAACGACACTGCCCCAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [9,1] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [53.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [66,56] Score: 0/0.18 # # Final direction: F [0.64,0 Confidence: HIGH] >NC_014364 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1128272 32 100.0 35 NNNNNNNNNN ................................ CGGGCGGAGCTTAGCCTCGCCTCGGAGGTTCATAA 1128339 32 100.0 34 NNNNNNNNNN ................................ TGTTTAAGCTTGTCCTCTTTCTCCGTCTTCTGGG 1128405 32 100.0 36 NNNNNNNNNN ................................ ACCAACAGGGAATTGCCGAGGCATGTATGGTACATT 1128473 32 100.0 34 NNNNNNNNNN ................................ GTAAGTATCCCTTTCATGTTTTATCTGGTTTAAG 1128539 32 100.0 35 NNNNNNNNNN ................................ GAAGAAAAGAAAATGCATGTACTACGACTTATACC 1128606 32 100.0 34 NNNNNNNNNN ................................ TTATAATGTACCGAGACGTTTTGTCTAACTCCCT 1128672 32 100.0 35 NNNNNNNNNN ................................ AAGTTACTTGTCATATCTCACCTCCAATATAGTTT 1128739 32 100.0 36 NNNNNNNNNN ................................ ATGGAACAAGGAACAGGTAAAAGTAAAACACTCCTT 1128807 32 100.0 35 NNNNNNNNNN ................................ ATAATAAAGAACATGCAAGAAAAAGTAACGATAAT 1128874 32 100.0 35 NNNNNNNNNN ................................ ATAAATCATAGCCGGACCGTAATCACAACTAACCA 1128941 32 100.0 34 NNNNNNNNNN ................................ ACCGTTTTGATGGCGAGCTGTGGGAGTCCATAGG 1129007 32 100.0 35 NNNNNNNNNN ................................ GAGAAAAATATCAATAAAGCTTCCACCTAATGCAC 1129074 32 100.0 35 NNNNNNNNNN ................................ CCGCTTTTTAATACCGGGAATTCTTTGACGTCCCA 1129141 32 100.0 35 NNNNNNNNNN ................................ ATAGCAGACCTTATATTTCCCTGAGTAACAGATTC 1129208 32 100.0 35 NNNNNNNNNN ................................ ATCTGTTCATCTAAAAGCCGCTTTACAGACTTCGC 1129275 32 100.0 36 NNNNNNNNNN ................................ AACAAGGTTATTCCGGAAAGTAAGTATGAGGAATGG 1129343 32 100.0 34 NNNNNNNNNN ................................ GAAAATGCGTTTATTGACCAAGGACCCTCACCTG 1129409 32 100.0 36 NNNNNNNNNN ................................ ATGCAAGGCTCGTAGCGGCAAATGTAGACGGGCTGA 1129477 32 100.0 35 NNNNNNNNNN ................................ ATCGGAGGATCCCGTACCCCTGTTATTATTTCCGA 1129544 32 100.0 35 NNNNNNNNNN ................................ GTAGGCAGGCCCATAAGCTGCCAAACATCAAGATT 1129611 32 100.0 35 NNNNNNNNNN ................................ ACCTATTGGTGCTACGCTGGTTAAGTCTGATTTTC 1129678 32 100.0 34 NNNNNNNNNN ................................ AAAGGTGGATCCTATTACAATTGGTGCTTTAACG 1129744 32 100.0 36 NNNNNNNNNN ................................ CCGCTCGAAACCGCGAGAATGGCACCAGGGTAATAG 1129812 32 100.0 35 NNNNNNNNNN ................................ TTCCCTGATCTCTCTAAGCCGGTCAATAACCGACT 1129879 32 100.0 34 NNNNNNNNNN ................................ GGAAACCTTGTACTGAGCTACCCAGTCAGGATAT 1129945 32 100.0 36 NNNNNNNNNN ................................ ACTTCTGCCTGGTGTTTTCTCAGCGTCAAAACGAAG 1130013 32 100.0 35 NNNNNNNNNN ................................ ATCCATGAGCGAACAAAACAAGAAAAATTATACGC 1130080 32 100.0 35 NNNNNNNNNN ................................ CAGCTGCAATCCCAGGGAATTGGTAAACGCTATTG 1130147 32 100.0 36 NNNNNNNNNN ................................ GCCCCGTTATTATCAACGCCTACTTAATATACCTAG 1130215 32 100.0 35 NNNNNNNNNN ................................ AGAAAAAAAATCACGATTATAACGAACATAACTAT 1130282 32 100.0 34 NNNNNNNNNN ................................ GTTGGAACAGTCTAGCTCCGTGTTCGAGGCTAGG 1130348 32 100.0 35 NNNNNNNNNN ................................ CGGCTAAAGCACCAATTGTAATAGGATCCACCTGT 1130415 32 100.0 35 NNNNNNNNNN ................................ GCGTCGTTCCTGGCGCAAGGATTATTTTACGAGTG 1130482 32 100.0 35 NNNNNNNNNN ................................ GATGATCCCCGAAGAGATTCAGCGTGGTCAGAGCG 1130549 32 100.0 35 NNNNNNNNNN ................................ GATAAGGAGGACTCCGGTGAGTAGACCAAAACTTT 1130616 32 100.0 36 NNNNNNNNNN ................................ TTTTGTATATAGTCAGCAACATATCTGGCTGAATCA 1130684 32 100.0 34 NNNNNNNNNN ................................ GTTACCATCACTTATGACGATGCTCATTTGCCTG 1130750 32 100.0 34 NNNNNNNNNN ................................ ATTATGCTATTACATAGCTCACAGGCTGTACTAT 1130816 32 100.0 35 NNNNNNNNNN ................................ AAATGTCCCGTAACGGGTAGCCCATACCCGTTAAT 1130883 32 100.0 35 NNNNNNNNNN ................................ ATTAAATAAATTAAAAAAGGAGCAAGCCTATTCAA 1130950 32 100.0 35 NNNNNNNNNN ................................ ATCTATGCTTTCTAACATTTCTATGAGGGAAGTGG 1131017 32 100.0 34 NNNNNNNNNN ................................ AAAGGAGCTTGTTAATCCTACTATAGTGCTAACG 1131083 32 100.0 37 NNNNNNNNNN ................................ TTTTCAAAAACATCCCTGGCAGCCTCTATTGCTGCTG 1131152 32 100.0 36 NNNNNNNNNN ................................ AGAAACATTCATGCCTGAATATTAAATCTGTAAAGA 1131220 32 100.0 35 NNNNNNNNNN ................................ ACGGAGGTTTTAGCTTCCTAGAAAAGAATAAATCA 1131287 32 100.0 34 NNNNNNNNNN ................................ ATGGCTGATGATCGATGTGTACAGGTTCCATTCG 1131353 32 100.0 35 NNNNNNNNNN ................................ GTGACTGTGACAAGCGACACATCAAAATCCACAAT 1131420 32 100.0 33 NNNNNNNNNN ................................ TGCATCAAGGCAGCTATGCCAGCCTGGCAAAAA 1131485 32 100.0 35 NNNNNNNNNN ................................ TGATGATCGCAGACAGGGCCATCGAAACATCCATT 1131552 32 100.0 36 NNNNNNNNNN ................................ GATGACAACCACCCCATTGGCACACTTCTACTGCTT 1131620 32 100.0 34 NNNNNNNNNN ................................ TCATTCCGGAAGAGGGATTACTTGATCGCTGTCA 1131686 32 100.0 35 NNNNNNNNNN ................................ GAACCCCGCATGTTAACTGCATTGATCCGGGCCAC 1131753 32 100.0 35 NNNNNNNNNN ................................ GATAATTCAATGCGATTGTTTTTCCAAACATCTCC 1131820 32 100.0 35 NNNNNNNNNN ................................ GATCAGCGCCTTGACTGCTTTCATTTCAGACCGGC 1131887 32 100.0 35 NNNNNNNNNN ................................ ATAATAATATGATGGAATATGTATAAAGGTGTTGT 1131954 32 100.0 35 NNNNNNNNNN ................................ GGGGGTATCAGTTCCGACTTCCTGATTGGTGATTT 1132021 32 100.0 35 NNNNNNNNNN ................................ ATGATTGAATTAGGCGATAGGCTCTACCTTTCAGG 1132088 32 100.0 36 NNNNNNNNNN ................................ GCTATACATACAGGCGTGGAGCAATGGGACAGGCTA 1132156 32 100.0 34 NNNNNNNNNN ................................ AATTATACTCTATAATTTATAGTATATTGAATAA 1132222 32 100.0 37 NNNNNNNNNN ................................ CTCATTAGCCCTTTACTCCATCATTCCAATATCCTAA 1132291 32 100.0 34 NNNNNNNNNN ................................ AAACGAATAGTAACCCCATAAGTCTCTCCATAGT 1132357 32 100.0 34 NNNNNNNNNN ................................ GAGCGAATGGTGATCGACGGGAAGATCGCCCACG 1132423 32 100.0 35 NNNNNNNNNN ................................ ACGAAAGGTGTCAGAATAACGCCTGCCGTCTGATA 1132490 32 100.0 36 NNNNNNNNNN ................................ AAGTTTGCCTGTGCAAACGGGGATTACATCAAGTGG 1132558 32 100.0 34 NNNNNNNNNN ................................ GTATGCCGATTTCCATTTACTTTGCCCCCTGCAT 1132624 32 100.0 37 NNNNNNNNNN ................................ AATGAGTAGAATGGTATCTATGTCAGCAATAACAACG 1132693 32 100.0 34 NNNNNNNNNN ................................ ATGGCTGATGATCGATGTGTACAGGTTCCATTCG 1132759 32 100.0 35 NNNNNNNNNN ................................ GTGACTGTGACAAGCGACACATCAAAATCCACAAT 1132826 32 100.0 36 NNNNNNNNNN ................................ ACTGAGACCTTTGAGGGGTACGCAAGAATCTCGAAC 1132894 32 100.0 35 NNNNNNNNNN ................................ ACGAAAGGTGTCAGAATAACGCCTGCCGTCTGATA 1132961 32 100.0 36 NNNNNNNNNN ................................ AAGTTTGCCTGTGCAAACGGGGATTACATCAAGTGG 1133029 32 100.0 34 NNNNNNNNNN ................................ GTATGCCGATTTCCATTTACTTTGCCCCCTGCAT 1133095 32 100.0 37 NNNNNNNNNN ................................ AATGAGTAGAATGGTATCTATGTCAGCAATAACAACG 1133164 32 100.0 34 NNNNNNNNNN ................................ ATGGCTGATGATCGATGTGTACAGGTTCCATTCG 1133230 32 100.0 35 NNNNNNNNNN ................................ GTGACTGTGACAAGCGACACATCAAAATCCACAAT 1133297 32 100.0 35 NNNNNNNNNN ................................ TCCCGTAGGTTTCTTGCAACGAGGTGGGACGAAGC 1133364 32 100.0 34 NNNNNNNNNN ..............A................. AGCTTATTAAGCAGTGACTTTATTCTGGAGTCAG 1133430 32 100.0 1 NNNNNNNNNN .....AT..C.......T......GG..CG.. NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 78 32 34 GTCGCTCCCTTCGCGGGAGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [5,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.90,-5.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [76.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [156,1077] Score: 0.18/0.18 # # Final direction: F [5.55,0.55 Confidence: HIGH] >NC_014365 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1894688 37 100.0 32 GCGCGCTGTG ..................................... GAATCGTTCAAAGGCCAAGACGGCCAGTGGCA 1894757 37 100.0 34 GCCAGTGGCA ..................................... GGAGTCGCGTCTTGGAGGATACAGACGCCTGGAC 1894828 37 100.0 37 ACGCCTGGAC ..................................... CGAGGAGAAAGAGAGGAAGTCGGAAAGCATCGGCTTG 1894902 37 100.0 33 CATCGGCTTG ..................................... AAAAAATGGCAACGCCGGGGCCGTGGAGTCTAG 1894972 37 100.0 TGGAGTCTAG ..................................... GGTACCCCAG ========== ====== ====== ====== ========== ===================================== 5 37 34 GTTTCAATCCGCTTCCTCTAGCGGCATCCCTCAATAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [7,11] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.10,-7.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [35.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [295,226] Score: 0/0.18 # # Final direction: R [0.37,5.14 Confidence: HIGH] >NC_014365 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1844781 32 100.0 34 NNNNNNNNNN ................................ GCCAGCCTGACGGCGGACCTGAAAGAGGTCCAGG 1844847 32 100.0 36 NNNNNNNNNN ................................ CCCGGACTGCGGCGCGTATCAGGTGATGACATTCGA 1844915 32 100.0 36 NNNNNNNNNN ................................ TCGAGCTCGATCTGCTTGAGCTTGGCCGTGTCGCCG 1844983 32 100.0 33 NNNNNNNNNN ................................ ACCGCGGCTACGAGAAGGCCCCGCAGCAGCCGG 1845048 32 100.0 34 NNNNNNNNNN ................................ GGATACACTCTGCCGCCGGCGGCCGTGCCGGCGG 1845114 32 100.0 34 NNNNNNNNNN ................................ TTTGGTGCGCACTGCCTGGACGCCGCGGCATGCA 1845180 32 100.0 34 NNNNNNNNNN ................................ AATATCTGGTCCTCGCGGCGATCCGTGGCCCAGT 1845246 32 100.0 33 NNNNNNNNNN ................................ CCCCATCCTGCTCAGCAGATCGGCCACGATGGC 1845311 32 100.0 35 NNNNNNNNNN ................................ CGGGTCTCAATCGCTGCCATGCGCGCCGCCCAGGC 1845378 32 100.0 33 NNNNNNNNNN ................................ TGGAAGGTCGCCAGCCTTGGCGGCGGGCTTGAG 1845443 32 100.0 36 NNNNNNNNNN ................................ GCTGGCGTTGGCAAGGCCCTGATGGCCCATCCCTTG 1845511 32 100.0 34 NNNNNNNNNN ................................ CAGCGTCAACGCCGACACGTTGCCGGCGCTGCGG 1845577 32 100.0 33 NNNNNNNNNN ................................ GGTCCAGCAGATGTACAAATCAGTGTGTGCCGC 1845642 32 100.0 34 NNNNNNNNNN ................................ CGGTGACGGTGTAGCCCTCCTCCTCGGGCTGCAA 1845708 32 100.0 35 NNNNNNNNNN ................................ CCGCCTAACTGGTACTGGGCGGGACGGCCGATCAG 1845775 32 100.0 34 NNNNNNNNNN ................................ TGGTAGCCCCTGGCGGCCTTGACCCGACCGCCGG 1845841 32 100.0 34 NNNNNNNNNN ................................ TTTAGAGGGGAGCCTCCTGCTGTGAGATGTTACG 1845907 32 100.0 32 NNNNNNNNNN ................................ GATCAGGTGGCCCATAAGCTGAATGGAGACAA 1845971 32 100.0 34 NNNNNNNNNN ................................ GCCACGTCCGCCGAGGCCGGGCCCAGCAGGCTCG 1846037 32 100.0 36 NNNNNNNNNN ................................ GGAGCCCGCGCCCTTGCGGCGCGCGCATAAAAGCCG 1846105 32 100.0 34 NNNNNNNNNN ................................ CCAACTGATCGGCCGCCGACCGCGCGACAAACGC 1846171 32 100.0 34 NNNNNNNNNN ................................ TCTTCATGCGCTGGCCTCCTTCACAAGCCGGTAT 1846237 32 100.0 34 NNNNNNNNNN ................................ ACGAGTTGTGCCACCTCATGCCCGACGAGGGTGG 1846303 32 100.0 33 NNNNNNNNNN ................................ GAAGATGGTGCAGCCGCTTAAGCTGGTGGACGC 1846368 32 100.0 32 NNNNNNNNNN ................................ TTGGCGGTGGTTGAGGCCGCCGCGTGGCGGCA 1846432 32 100.0 34 NNNNNNNNNN ................................ GGCATCATGCCAGAGGCGGCCAGCACTTCGGACA 1846498 32 100.0 35 NNNNNNNNNN ................................ GACGCCTGGGTCAAGATGACCACCGATTACATCCA 1846565 32 100.0 33 NNNNNNNNNN ................................ CTTCATGGTCGTCACCAGCTCTTGCATGGTGGC 1846630 32 100.0 34 NNNNNNNNNN ................................ GCGTTTGGGGTGTCGCTTGATCGACTTTGAAAAC 1846696 32 100.0 34 NNNNNNNNNN ................................ TGATCGATCGGGTCGTGTACCCACAAATGCTTAA 1846762 32 100.0 33 NNNNNNNNNN ................................ GGCGGGACGGGGTCGTCTGGCTCTGGCCTCAAT 1846827 32 100.0 34 NNNNNNNNNN ................................ GATGGTAAGCCCTATGACGACGACTTCGCGGCCG 1846893 32 100.0 34 NNNNNNNNNN ................................ TCGTGTATACAATGCGCCAATTGGTGGCGGCCTC 1846959 32 100.0 34 NNNNNNNNNN ................................ ACAACAAGACCAAGAACTATCACAACACCAACGG 1847025 32 100.0 35 NNNNNNNNNN ................................ GAGACAGCATTTCCGCTGTCGCACATGCAAGACCC 1847092 32 100.0 33 NNNNNNNNNN ................................ GGCCACGTTCGCCGACGCCCAAGCGGTCGGGTC 1847157 32 100.0 34 NNNNNNNNNN ................................ TGCAGTTCGTTCTGGATCAGATACGCCGGGTTGA 1847223 32 100.0 34 NNNNNNNNNN ................................ GGGTGCACCCCGACACCATGCGGGAGTGGCTGCG 1847289 32 100.0 34 NNNNNNNNNN ................................ TGCGCGAGATTCACGACAGCCTGGACATGACCCC 1847355 32 100.0 35 NNNNNNNNNN ................................ CGATTAATCGTAATTATTGGTTGACTTATTGCGGT 1847422 32 100.0 32 NNNNNNNNNN ................................ GCTGGAAGACCCCAATTCGTGGGGCCGGCCCA 1847486 32 100.0 34 NNNNNNNNNN ................................ CCCACGGCCCAACACAGATTGGCGGCCAGGACGG 1847552 32 100.0 35 NNNNNNNNNN ................................ CGCTCCTTCCCGCCCGCCAGGACGGCGGGCGCTGG 1847619 32 100.0 34 NNNNNNNNNN ................................ GTAGTATTTTGTTGACACGTGATTACTGCTATGT 1847685 32 100.0 35 NNNNNNNNNN ................................ CGCGGCGGGGGCGGCGGCCAGCTTGGCGCTGGAAA 1847752 32 100.0 34 NNNNNNNNNN ................................ TCGGCGCGGGTTGGCGGCGGCGTGGGCTGGGCGG 1847818 32 100.0 33 NNNNNNNNNN ................................ ATCAGCCGGGCGCTCAATCCGGCGCGCTTGCCC 1847883 32 100.0 35 NNNNNNNNNN ................................ ATGTGGGAGTCGATCGATCGCGGCACCCTATGCGG 1847950 32 100.0 35 NNNNNNNNNN ................................ GCATTGAAAAGCGGCGGGGCCAGCCAAAGCTGACC 1848017 32 100.0 34 NNNNNNNNNN ................................ GGTTCCAATCGTATCTATTGAGTGTGTTGGTGTA 1848083 32 100.0 35 NNNNNNNNNN ................................ CAACGTGAGCAAGGCGGCCGCCGTCAACAACACCG 1848150 32 100.0 35 NNNNNNNNNN ................................ TGGTCTGGCCGGCTGCGCCGTCACCGCCGCGCCGA 1848217 32 100.0 35 NNNNNNNNNN ................................ GCGTTGACCTCCGTTCACCGATCGTGCGTTAATAG 1848284 32 100.0 34 NNNNNNNNNN ................................ TCGATTTAGGCCAACGCTCGTGGCCACCGTCTTG 1848350 32 100.0 33 NNNNNNNNNN ................................ TAGGCCCAATGGAGATGACTGGATGAAGATCAA 1848415 32 100.0 34 NNNNNNNNNN ................................ CCACGAACACACGCTTGGGGGTTTTGATCTTCGC 1848481 32 100.0 35 NNNNNNNNNN ................................ AAGATATAAATCAAGCACTTAGAGATAAATATGGA 1848548 32 100.0 34 NNNNNNNNNN ................................ AGGCGCTGACGTCGGCCCGCCGCATGGATATCTG 1848614 32 100.0 34 NNNNNNNNNN ................................ GGCTACTTCCAGCAGAACCTTCAGAAGATCACCA 1848680 32 100.0 34 NNNNNNNNNN ................................ TGTTCCTCCGTTTTCGCCCCCAGCAGGGGGGCGA 1848746 32 100.0 34 NNNNNNNNNN ................................ GAGGAACTGGCCAGCGCATCAAAAATCAGCCTCA 1848812 32 100.0 34 NNNNNNNNNN ................................ CAACCCTCCAGCCGCGCGAGCAGCCGCGCGATGG 1848878 32 100.0 34 NNNNNNNNNN ................................ GTTGCTCCATCAGGTGACGGTGTAAAAGTTTAGT 1848944 32 100.0 34 NNNNNNNNNN ................................ TTTTCAGGTTCGCGGCGGCATAGGCGTCCACCGC 1849010 32 100.0 34 NNNNNNNNNN ................................ CGCGGCCCGGGTGAAGATGGGGAAGTCGCGCACC 1849076 32 100.0 35 NNNNNNNNNN ................................ TGTGGCTTGCCTCATCGGCGCTGGGGGTGCCACCC 1849143 32 100.0 34 NNNNNNNNNN ................................ CGCCCCCTGCAAAACACCAAGCAGGGACGTGCCA 1849209 32 100.0 34 NNNNNNNNNN ................................ TTTGTTCGTGCGGCGAAGGCCTCTGCCAGCAGAG 1849275 32 100.0 34 NNNNNNNNNN ................................ TTCAAGTGGGTGTTGGTGAGCCGCGAGGAGTTCG 1849341 32 100.0 34 NNNNNNNNNN ................................ GCCTACCCGCCAGCCGGCGTCGGTCAGGTGCTCC 1849407 32 100.0 35 NNNNNNNNNN ................................ TCGTTGCCGGCGAAGGTGTCGCTGGCGCGGCGTTG 1849474 32 100.0 33 NNNNNNNNNN ................................ TGTTCCGCCATGCGGCCGAAAAATGCCCAAAAA 1849539 32 100.0 35 NNNNNNNNNN ................................ ATATTTCAGATTATGGGGAAAATGAAAATGAATAA 1849606 32 100.0 34 NNNNNNNNNN ................................ AAGAGAAGATGAAGATGAAGATGAAGAAGGGGGC 1849672 32 100.0 34 NNNNNNNNNN ................................ GGTTCCGGACGGTGTTCCGCGCAGGCCGGTCATG 1849738 32 100.0 36 NNNNNNNNNN ........CTCACGCA...GCGT.GA.TG..A CGCAGCATCTTTCATCACGTCATTCAAAGACGCCAA 1849806 32 100.0 36 NNNNNNNNNN ................................ ACCTGTATTCGGCCGCCGATTCCGCAACCGAAGTTA 1849874 32 100.0 35 NNNNNNNNNN ................................ ACCCTTATCCTTTGATTGAACATCAATGTAAATAG 1849941 32 100.0 36 NNNNNNNNNN ................................ GTTTTGACCTCCTATACATCCGGCAGTCGTGTTCGT 1850009 32 100.0 35 NNNNNNNNNN ................................ CAAGAGGCGGTGAAAGACCTGCGTGTAGCCATCGG 1850076 32 100.0 35 NNNNNNNNNN ................................ TCCCAGCATTCGCCGGAGCAAACCCACGTGCCGTC 1850143 32 100.0 35 NNNNNNNNNN ................................ GCTGAAAGGCCAGCAGCATGCCGCCCGTGCGCTCG 1850210 32 100.0 33 NNNNNNNNNN ................................ TTGACGGCATGGCCATCTACAACGCCCTGAAGT 1850275 32 100.0 33 NNNNNNNNNN ................................ CTGCCTGGGCCGTGGCGCTCTGCTGCAGCATGG 1850340 32 100.0 34 NNNNNNNNNN ................................ GTCTCATTGCTAGAGATATCGCCCCAGAATTGCC 1850406 32 100.0 33 NNNNNNNNNN ................................ GGTTACCCTGGCTGTGGCCACCATGCTATCAAC 1850471 32 100.0 35 NNNNNNNNNN ................................ TACAGTACTAGTCCATATCCTTCTACTTTGCTTAT 1850538 32 100.0 35 NNNNNNNNNN ................................ TCCCGGAGTCGGCAAAATGGTCAGAACGGGATGTC 1850605 32 100.0 35 NNNNNNNNNN ................................ CATCGCAAATGGCTTGACTATGGAAGTAATCGCGG 1850672 32 100.0 34 NNNNNNNNNN ................................ GCCACACGTACCAGCACCGGATTCGGTGTTGGGC 1850738 32 100.0 34 NNNNNNNNNN ................................ TTGATCGTTGACCGCCGTGTCCAGCGCGGCTTGC 1850804 32 100.0 34 NNNNNNNNNN ................................ TTCCTGTTCAGCCTCTGCCTCTGTCACCTCGGCA 1850870 32 100.0 33 NNNNNNNNNN ................................ TGGCGTTGGCGGCCACAATGCGCAGGTTGTCCG 1850935 32 100.0 35 NNNNNNNNNN ................................ GTGACCACCAGCACCTGTTCCATTTTCTCTCTCCC 1851002 32 100.0 35 NNNNNNNNNN ................................ TGGCCCCATTTAACTACGGCCCCAACTGGGGCCAT 1851069 32 100.0 34 NNNNNNNNNN ................................ GGCAGGTCAGGGTCAGCATCGCCTGGCCCGGATA 1851135 32 100.0 34 NNNNNNNNNN ................................ CGTCATGCCGTGGCATGACGGGGATAATTATTTG 1851201 32 100.0 33 NNNNNNNNNN ................................ CGCCGTGACAACGCGGCTTACTTCCGCGATGGC 1851266 32 100.0 36 NNNNNNNNNN ................................ CGCGGCGGGGGCGGCGGCCAGCTTGGCGCTGGAAAA 1851334 32 100.0 33 NNNNNNNNNN ................................ CTAATTAAATTCAATTTATTGATAAACTTAATT 1851399 32 100.0 35 NNNNNNNNNN ................................ GATCTTGATTGTGTATTATATGGCCACCTACGCAC 1851466 32 100.0 34 NNNNNNNNNN ................................ GGAAAATCGCTTGCGGTTGGCGCGTCAGGATACA 1851532 32 100.0 36 NNNNNNNNNN ................................ GGGCTCGCACTTTTTGGCATGGCCATGAGCCAACCG 1851600 32 100.0 34 NNNNNNNNNN ................................ CACCACGACTGGCGCAGTACGTCGAGCATGCCGG 1851666 32 100.0 36 NNNNNNNNNN ................................ ATATCGGGACTATCCCGCATTCCACGGCCGCCTCCA 1851734 32 100.0 35 NNNNNNNNNN ................................ GTCGAGTTCCTTGCCGGCCAGCACATCGCCCGCGT 1851801 32 100.0 35 NNNNNNNNNN ................................ TTCAGTTCTCGCGTCTTCAGCGCCCGCAGCCGCTC 1851868 32 100.0 34 NNNNNNNNNN ................................ AGCGACATCGAGGCGCTAAAAACGCTCAACGTGC 1851934 32 100.0 35 NNNNNNNNNN ................................ GCCGCGCTGCGTAAGGCTGCCGCCGAGGCGCCCGA 1852001 32 100.0 35 NNNNNNNNNN ................................ GCAGGACGCAAAGCGCGAAGCCGAGGATGGCCCAC 1852068 32 100.0 36 NNNNNNNNNN ................................ TGAATCTGGGGCCGTCGGCACGCCAAACGGCATAAA 1852136 32 100.0 34 NNNNNNNNNN ................................ CAGCACCGTGATAATGTGCCATTTGACCTGCTCC 1852202 32 100.0 33 NNNNNNNNNN ................................ TTCGCCAGGCCGCGCGGATAAATGGACAGTCGC 1852267 32 100.0 35 NNNNNNNNNN ................................ GCTCATTGGCGATCGGCCAATGGTTGGCGGATCGC 1852334 32 100.0 34 NNNNNNNNNN ................................ ATGGGGTACACCTCAGCATAGTGCTTGTACACAC 1852400 32 100.0 35 NNNNNNNNNN ................................ CCCACGTCCACGCTGCTGGGCGTCAACGCCGCCGG 1852467 32 100.0 35 NNNNNNNNNN ................................ CCGAGGTATTGCGTGTTCAACGAGCGCGGCGAAAA 1852534 32 100.0 35 NNNNNNNNNN ................................ CGGCTGCTAAATCACACTCAACACGGCCTTTCCGG 1852601 32 100.0 35 NNNNNNNNNN .........................C...... TGGTACTTTTCGTTCCGGCGGGTCTATCCCCATGG 1852668 32 100.0 36 NNNNNNNNNN ................................ ACAAATGGTTTTGAATATGAATAATCTAAATAGGTG 1852736 32 100.0 35 NNNNNNNNNN ................................ AGGGCCTCGTGCGTGGCCTCGTTGTCGTTGTCTGT 1852803 32 100.0 37 NNNNNNNNNN ................................ GGGGCAATCCGCCGTCGTGGAACCCAATGTAGCCATC 1852872 32 100.0 35 NNNNNNNNNN ................................ AGCGCAATGAGCGTCGACGCCTCGGTCTGGGCCAG 1852939 32 100.0 34 NNNNNNNNNN ................................ ACCTGCTGTGGGCCAGCCCGGATTGCAAGCACTT 1853005 32 100.0 33 NNNNNNNNNN ................................ GCCGTTGGGGCGGGCTTATGCCGCTGACATGAA 1853070 32 100.0 34 NNNNNNNNNN ................................ CTCATCATCGCCTCACTGCTTCTGGCCACGGCGG 1853136 32 100.0 34 NNNNNNNNNN ................................ ACCGCCGCCATCAGCGTGTCGGCAGGAAGATAAG 1853202 32 100.0 34 NNNNNNNNNN ................................ CTATATAGAGTAGGTAGTAAATATGCTGTATATA 1853268 32 100.0 33 NNNNNNNNNN ................................ CACTAGTACAAACAATCCATAGAAAGGATAAGA 1853333 32 100.0 35 NNNNNNNNNN ................................ GCCGTCAGGTCGGCCACGGAGCCGCTCTCCCTCAT 1853400 32 100.0 34 NNNNNNNNNN ................................ TCCTGCGCGCCGACGGCTAGCGTAACCTTCCTGA 1853466 32 100.0 35 NNNNNNNNNN ................................ ATAAATGCTGCATGGGCCGAACCGCATTACGTCAT 1853533 32 100.0 33 NNNNNNNNNN ................................ ACGGGCGGATTGCACGACATAGTCATAGCCCAC 1853598 32 100.0 34 NNNNNNNNNN ................................ TGAATACGCGCAACCTGAGTGGGGGCGGAAACCC 1853664 32 100.0 33 NNNNNNNNNN ................................ GCCGCCGTCGCCGTGGGGACTCATGGCCTTGGC 1853729 32 100.0 35 NNNNNNNNNN ................................ CATGCCATACGCCCGCGTGTACCACGCCTTGATTA 1853796 32 100.0 36 NNNNNNNNNN ................................ ACTTGCGGTTGCGGATCGAGCGCGGGGAGGCTCGCG 1853864 32 100.0 36 NNNNNNNNNN ................................ GCGGGCCATTCGCTGGTTTTGCGAATGGCACCAGAC 1853932 32 100.0 34 NNNNNNNNNN ................................ GCGCGTCACGCCGGACGGCCACGCCACGGTTGTG 1853998 32 100.0 35 NNNNNNNNNN ................................ TTTTTGATGGGGCCGGTTGGATCGTGCATGATCCC 1854065 32 100.0 35 NNNNNNNNNN ................................ TTATAGTACTAGTCCATATAAGCAAAGTAGAAGGA 1854132 32 100.0 35 NNNNNNNNNN ................................ ATGGTCATGCTCCTGTACGGCCCAACCGGCACACC 1854199 32 100.0 36 NNNNNNNNNN ................................ TGCTTCTGGACGGGCGCTTGACGATGACGCGCAAGG 1854267 32 100.0 34 NNNNNNNNNN ................................ CGTTTCGTGGACCCACCTCGGGACAGGCGCTTGG 1854333 32 100.0 33 NNNNNNNNNN ................................ GGGATGGTGAAAAATGAACGTGGTTGCAATCCG 1854398 32 100.0 34 NNNNNNNNNN ................................ GTCAACGAGCGCCCGGTGCGGCAAAAGATTTCAT 1854464 32 100.0 33 NNNNNNNNNN ................................ ACACGATGGCCGTCAACCCCAGGTGGGAGCTTG 1854529 32 100.0 33 NNNNNNNNNN ................................ ACTATTCCTCCACTTCTGGCCATTTCACGCCAA 1854594 32 100.0 35 NNNNNNNNNN ................................ ATGCCGTCCTCGTTCAGGCCCAGGGCTTTGTAGTG 1854661 32 100.0 34 NNNNNNNNNN ................................ GCCCTCGTGGCTGCTGGTGCTGCCCTGCTGATTA 1854727 32 100.0 35 NNNNNNNNNN ................................ TGGGACTGGACGACGGGGCTTTTTACGAAAGCATG 1854794 32 100.0 34 NNNNNNNNNN ................................ ATGGGCCGTCGCCGCGTGGTCGTGGTCAACCCTC 1854860 32 100.0 36 NNNNNNNNNN ................................ GGTTTGGAGCAATGAAAATGAAGGCATTTAGAGCAG 1854928 32 100.0 34 NNNNNNNNNN ................................ GGAGGAAATGTTTGCCAAGCGTGTTCGGCAATTC 1854994 32 100.0 34 NNNNNNNNNN ................................ TCGAATGCCGTAGGCGATGTTGCCCCAGTAGCGG 1855060 32 100.0 34 NNNNNNNNNN ................................ CCCACGCAAGAGCAAATTTATCCACCAGCGACAG 1855126 32 100.0 35 NNNNNNNNNN ................................ GCGGTGGCGAGCAACCCCTTAGCCTGAACCAACGG 1855193 32 100.0 34 NNNNNNNNNN ................................ CCTTGCCAGCCGCTCGATCATCTCCCGCGCCGCC 1855259 32 100.0 34 NNNNNNNNNN ................................ CCTCTCCCCGCACGGCCATCACGGTCAAAACGTG 1855325 32 100.0 34 NNNNNNNNNN ................................ GAGCAGACCGGCATCAGCATGGTGGCCGCCCGCG 1855391 32 100.0 35 NNNNNNNNNN ................................ AACGGCCCAGTCTGGCAACGAAGTAAAGACGCCGA 1855458 32 100.0 34 NNNNNNNNNN ................................ GTTGACCTGCGCAGCATCATTGTGCAAATGGCCG 1855524 32 100.0 36 NNNNNNNNNN ................................ TGCTATACGAGCATAACCAACCCTTGTACCTACGGG 1855592 32 100.0 33 NNNNNNNNNN ................................ ATAAACAACAGTCTGCCCCAAAGGAGTCCAAGT 1855657 32 100.0 36 NNNNNNNNNN ................................ GTTGAAACTATCGGTGAATGTGTTGCCGCCCACGCG 1855725 32 100.0 34 NNNNNNNNNN ................................ CGGCCACAACCTGGCTCTACGCCGAGCCGGCCCA 1855791 32 100.0 34 NNNNNNNNNN ................................ CGGTGGTGGGAGGGCTGGTCGTGTCAATGATCAG 1855857 32 100.0 36 NNNNNNNNNN ................................ GCACCCACGGGCGTTGATCCGAGCCAACATCGTCGC 1855925 32 100.0 34 NNNNNNNNNN ................................ TCGACTGCCGCCTGGGAAAGAGCGGCCGATGACG 1855991 32 100.0 36 NNNNNNNNNN ................................ CATTCGTCACTCTCCTCTCCTCCAAATCCGCCAACA 1856059 32 100.0 35 NNNNNNNNNN ................................ CGGCCGCGCGGCGGCTAGCCTCGCGCGCCGTCAGC 1856126 32 100.0 34 NNNNNNNNNN ................................ CGATGCTGTTGCCTGGCTCTGCGTTAGGAGCAGG 1856192 32 100.0 35 NNNNNNNNNN ................................ ACGCCGCCGGGAATCTCCGCCTTAATGGCGAAGTT 1856259 32 100.0 36 NNNNNNNNNN ................................ GACGACTGGTCCGCCGTCGGCACGGTGACGGTGTTG 1856327 32 100.0 35 NNNNNNNNNN ................................ ATTGCCACCCCGTCCCAGCCGGTGGTATCTGGATG 1856394 32 100.0 34 NNNNNNNNNN ................................ TGGCGCACGCTGGGCAAGGTGACCGAGGACGTCA 1856460 32 100.0 34 NNNNNNNNNN ................................ ATGCTCGCCAACATCGACCGCGACGTTGTCGGCC 1856526 32 100.0 35 NNNNNNNNNN ................................ TGTATCGGGGGCATGCCGTTCGGCCCGGTACGCCC 1856593 32 100.0 35 NNNNNNNNNN ................................ AGTGACCTGGCGGCCCTGGTCGTCGAAATATGTTT 1856660 32 100.0 33 NNNNNNNNNN ................................ GCCCCAGAGATCACGGTATCGCTGGGCAACGTG 1856725 32 100.0 34 NNNNNNNNNN ................................ GACGCCGACAACAAAATCGAGTTCAAGCTGACCC 1856791 32 100.0 35 NNNNNNNNNN ................................ CTGGATGGACGGCGCGGCAATGGCGGCCGTGGCCA 1856858 32 100.0 34 NNNNNNNNNN ................................ TGCAGTTCGTTCTGGATCAGATACGCCGGGTTGA 1856924 32 100.0 35 NNNNNNNNNN ................................ GCCCAGGGTCGCGCCGGCGGCCGACGGCATGCCGA 1856991 32 100.0 34 NNNNNNNNNN ................................ GCCCACGGCGTGCGGCGCGAGATGGATATCCGCG 1857057 32 100.0 35 NNNNNNNNNN ................................ GGGGCATGCACTGCCCCGAGGAGGCCGTGGCCGGA 1857124 32 100.0 34 NNNNNNNNNN ................................ TGCTTGTATATTCCTCGCCGCTGTCTTTGATCAG 1857190 32 100.0 33 NNNNNNNNNN ................................ TGGTGCCGGCGGAGGGCTTGGCCATCGTGCCGG 1857255 32 100.0 34 NNNNNNNNNN ................................ CTGGACGCACGGGCCGAGTTGCAGCCGGCCTACA 1857321 32 100.0 35 NNNNNNNNNN ................................ CGCCCTATGTCTATCAAGTGCGCAAGGATGAGTGC 1857388 32 100.0 35 NNNNNNNNNN ................................ CAGGGTCTACGACCACCAATTTCGCAAGGGACTGG 1857455 32 100.0 34 NNNNNNNNNN ................................ AAAAACTCCTGGCCCAGGCGCACACGATGACCAA 1857521 32 100.0 35 NNNNNNNNNN ................................ GCTTCGGTAAAATCAGCTAACCGCTAATAATTACA 1857588 32 100.0 35 NNNNNNNNNN ................................ CTGGAGATGGGCAAGGAATACCTGGGGCAGTTCCT 1857655 32 100.0 35 NNNNNNNNNN ................................ TGATCCGCCGGCCATTGACCCTACGCTCCTCGAAC 1857722 32 100.0 35 NNNNNNNNNN ................................ ATGGGCTTTGATCAAGCGGAAGAACCGCTGTGCAT 1857789 32 100.0 35 NNNNNNNNNN ................................ ATGGGCTTTGATCAAGCGGAAGAACCGCTGTGCAT 1857856 32 100.0 35 NNNNNNNNNN ................................ GGCCGTCAACCGCATCCTGGCGCGGTCTTGGCGCG 1857923 32 100.0 36 NNNNNNNNNN ................................ CCCTGTCGTTCCGGGTGTGTTCCGCCCGCCGGCTAC 1857991 32 100.0 34 NNNNNNNNNN ................................ GGATACACCCTGCCGCCGGCGGCCGTGCCGGCGG 1858057 32 100.0 34 NNNNNNNNNN ................................ GCCCTGGTGGAGTCGGAGACGCGCCGGGGCCGGC 1858123 32 100.0 35 NNNNNNNNNN ................................ ATGGCGAAGTTGAACCGGGAGTCCGACTTCCGGTT 1858190 32 100.0 34 NNNNNNNNNN ................................ GCGCAGCGGGTGATAGTCCAGGAATGCCACGTCC 1858256 32 100.0 35 NNNNNNNNNN ................................ TTGGCCAGGTCGGCGTGCAGGGCCAGCCTGCGCGC 1858323 32 100.0 33 NNNNNNNNNN ................................ TGGCCGGGTTGGTGGGCGAGGAGCGGTGCTCCA 1858388 32 100.0 34 NNNNNNNNNN ................................ GAAATTCGACCGATATCGTTCACCCAACAGCGAC 1858454 32 100.0 34 NNNNNNNNNN ................................ CCGGCGGCGTTGCTGACGATCTGGGCCGCGCCCC 1858520 32 100.0 34 NNNNNNNNNN ................................ CCATGTCGGCGGGGCGTCTGGCCCCGGCGTGGGC 1858586 32 100.0 37 NNNNNNNNNN ................................ CGGTGGTGGGGGGGCTGGTCGTGTCAATGATCAGCGC 1858655 32 100.0 34 NNNNNNNNNN ................................ TGGGTTGAGCAGAGGACCCGTCGTCCTTCGCCAC 1858721 32 100.0 35 NNNNNNNNNN ................................ TCGCCAGCGTCCGGGGGGCGGAGTAGATGTCCCAC 1858788 32 100.0 33 NNNNNNNNNN ................................ TTTGTCGTCTGGGTCTGACCCTCGCGCCAGAAG 1858853 32 100.0 35 NNNNNNNNNN ................................ CCTGCCAAAGTCGTAGATAATGCGCGGATTTTCGG 1858920 32 100.0 35 NNNNNNNNNN ................................ ATGGCCAACCTGGTGGGCGACTTGGCCGAGATCGA 1858987 32 100.0 34 NNNNNNNNNN ................................ CTGCCATATCGGACAGAGTTCTCAGAGCCGTTCT 1859053 32 100.0 35 NNNNNNNNNN ................................ TGCCCTGGTCGATTTAAGCATCGTATCCCTCCTCG 1859120 32 100.0 33 NNNNNNNNNN ................................ GTCGGTATACACTTTCGTGATAGTGCTGGTCGT 1859185 32 100.0 33 NNNNNNNNNN ................................ TTTGTCGTCTGGGTCTGACCCTCGCGCCAGAAG 1859250 32 100.0 35 NNNNNNNNNN ................................ CCTGCCAAAGTCGTAGATAATGCGCGGATTTTCGG 1859317 32 100.0 34 NNNNNNNNNN ................................ TTGTCACCAAAACATCGTTATCCCATGTCGTGCC 1859383 32 100.0 33 NNNNNNNNNN ................................ TCACGCGCGCGTACGTGCGCACGTGCCTTACGC 1859448 32 100.0 33 NNNNNNNNNN ................................ TTCTGACCTGACACTTGTGAAGTATTGCACTTA 1859513 32 100.0 35 NNNNNNNNNN ................................ TCAATCGGTTGTTTTTTGGCCGCCACGCTTTTCGC 1859580 32 100.0 34 NNNNNNNNNN ................................ ATGGATATGACGCGCTATGCAAAAAACCTGATGA 1859646 32 100.0 35 NNNNNNNNNN ................................ ATTAATGACTGTTATGCAGGCATTCAAAGTGTTAA 1859713 32 100.0 33 NNNNNNNNNN ................................ GCCAACCGCGGACTTCGGTCCATGCAGAGGAGG 1859778 32 100.0 34 NNNNNNNNNN ................................ TCGTATAGCTTAGTTAACCTCTTTCCCTCACCTT 1859844 32 100.0 34 NNNNNNNNNN ................................ ACAGCCTGGACAGCACGGGCGTCTCGTGGTACAA 1859910 32 100.0 34 NNNNNNNNNN ................................ TCTATTATCGATTCTAGCATGTGAGGTGCTTAGG 1859976 32 100.0 36 NNNNNNNNNN ................................ ATTACCTGATCCAGTAACCACACCGCCCTCTCTTCG 1860044 32 100.0 36 NNNNNNNNNN ................................ TTGTGGTTCCGTTTCCGACCGCGACAATCACGCTTG 1860112 32 100.0 34 NNNNNNNNNN ................................ CTGCAACCACTATCGGCGCGTCGCCGCCGGCCAA 1860178 32 100.0 35 NNNNNNNNNN ................................ GTCGCCGCGCTCACGCCGCCCGAGTTGGCCGCCGT 1860245 32 100.0 35 NNNNNNNNNN ................................ TCGTTGGGGTTGAGTTTGGCGTAAAGGGTCGAAAC 1860312 32 100.0 34 NNNNNNNNNN ................................ CACAATGGCGGTTTGTCGCAGCCCGGCGCTACAT 1860378 32 100.0 35 NNNNNNNNNN ................................ CTCGTTGATAGTATTCATCTCCCGCGCGCCAACGG 1860445 32 100.0 35 NNNNNNNNNN ................................ CAAACCAAAGACACGCCGGTGCAGGGCCTAATTCG 1860512 32 100.0 34 NNNNNNNNNN ................................ CCGATGACTGCGCCGGGAACAGAGCCCGGCCCGT 1860578 32 100.0 36 NNNNNNNNNN ................................ TCGCCGGGGCTACAAGATCGTGGACCGCATGGGCAC 1860646 32 100.0 34 NNNNNNNNNN ................................ CTTCGCGGGAAGCGGAAGACGACGCTGCCGGGGC 1860712 32 100.0 35 NNNNNNNNNN ................................ GCCTACCTGCGCCTTGGCTTGGACGGTGCCACCAC 1860779 32 100.0 33 NNNNNNNNNN ................................ TACCGCACGGCCTGGGCCGTGATGTCGAAGCCA 1860844 32 100.0 37 NNNNNNNNNN ................................ GCACCCACGGGCGCTGATCCGAGCCAACATCGTCGCG 1860913 32 100.0 34 NNNNNNNNNN ................................ CCCACGCAAGGGCGAATTTATCCACCAGCGACAG 1860979 32 100.0 35 NNNNNNNNNN ................................ TTGGGGAATGGTGCGCCGGACACGACCCCTGGCGA 1861046 32 100.0 34 NNNNNNNNNN ................................ CGTGCGGGCAGACGACTCCAGCGCATTTGGGGAG 1861112 32 100.0 34 NNNNNNNNNN ................................ AAGTCACCAACGGCGGCACCACCGGCACGCCGAA 1861178 32 100.0 36 NNNNNNNNNN ................................ TATCAATATTTGGCCCCGACACCCGGTGCGGGATGA 1861246 32 100.0 35 NNNNNNNNNN ................................ ACGGCGACCAGCCAGCGCCGCTGGTGGGCGTCGTC 1861313 32 100.0 35 NNNNNNNNNN ................................ AGGTGCACCTTGTCGCGGCCCAGGGCCTCGGCCAT 1861380 32 100.0 34 NNNNNNNNNN ................................ ACTTGAGCGCGGCTGGCGGGGCCGACAACTTGAC 1861446 32 100.0 33 NNNNNNNNNN ................................ TTGGGTCAGGCCAATGGCCTCGCGGATGGCCCG 1861511 32 100.0 33 NNNNNNNNNN ................................ GTTTTTTCCGAACCTCACTGGCTTGAGTCTTCG 1861576 32 100.0 35 NNNNNNNNNN ................................ GTGCTGGTGTTGCTCCCGCGCCAGTTTGAGCAGCA 1861643 32 100.0 35 NNNNNNNNNN ................................ GCATCACAGCCTACACGCCCCTCCGGCGCAGTCCG 1861710 32 100.0 35 NNNNNNNNNN ................................ CATGCTCACACCCTCATTGGCATGACGACGTGCTT 1861777 32 100.0 35 NNNNNNNNNN ................................ ATGCCCACGGCAAGGCATGGTCCGCTGGATTCCAC 1861844 32 100.0 35 NNNNNNNNNN ................................ TTAGCGCCTCGATGTCGCTGAACACCGCTACGCGC 1861911 32 100.0 33 NNNNNNNNNN ................................ AACCGCGGGCGGCCGCGATCCGAGCGCTTGCCG 1861976 32 100.0 34 NNNNNNNNNN ................................ AGGAAACGCTGTCCAAGGCCGTTGACGGACTTGG 1862042 32 100.0 35 NNNNNNNNNN ................................ TCGGGCCGTAACGCTGACTGATGTCGTCGGCCACG 1862109 32 100.0 34 NNNNNNNNNN ................................ TGCAATCCGAATCCGCCAGCGATAACCGTGAATT 1862175 32 100.0 36 NNNNNNNNNN ................................ GCCGGCAACATCGTGGACTGGCGGGGCATGACCCTG 1862243 32 100.0 35 NNNNNNNNNN ................................ GTTGGGCCTAATGACGGCCAAAACTGCCCCGCCTT 1862310 32 100.0 35 NNNNNNNNNN ................................ TTCGCCGCCCGCCCGCGGCCCGAGCGCCTGGCGGC 1862377 32 100.0 35 NNNNNNNNNN ................................ TCAGCCATACGCGGCCCATTGCCAAGGCCTTCCTG 1862444 32 100.0 32 NNNNNNNNNN ................................ TGGGCGATGTCCAGCGAGTTGCGGATCACCAC 1862508 32 100.0 33 NNNNNNNNNN ................................ TCCAGCCACAGCTCGCGGATGGCGCTCATCGCC 1862573 32 100.0 35 NNNNNNNNNN ................................ AGGTGCACCTTGTCGCGGCCCAGGGCCTCGGCCAT 1862640 32 100.0 34 NNNNNNNNNN ................................ GTTGTGAACGAAAACCACATTTTGCGCGTTATGC 1862706 32 100.0 35 NNNNNNNNNN ................................ TGGTTGACCGCTACGAGGGCGACGTCCGCGACATG 1862773 32 100.0 36 NNNNNNNNNN ................................ AAGGACAGGTCTGGCAAGCTGCGGCGAAGCATTCGA 1862841 32 100.0 33 NNNNNNNNNN ................................ TCGGGCGGGTTTATGACTCGCTGCATGGCCGGT 1862906 32 100.0 35 NNNNNNNNNN ................................ TCCGATGACTGCGCCGGGAACAGAGCCCGGCCCGT 1862973 32 100.0 34 NNNNNNNNNN ................................ AGCAACTCCATCACCGGGTTGAGTTTGAGCGGGG 1863039 32 100.0 33 NNNNNNNNNN ................................ GCGCAGATGGTGGCGCAGATTGCCAGCATTTGG 1863104 32 100.0 36 NNNNNNNNNN ................................ GGCGACGAAGAAGAGGACGACGCCGAGACGGCGCTC 1863172 32 100.0 35 NNNNNNNNNN ................................ TTCTTCAAGTCCTGGGGCGACTTTTTCCGCGCCAG 1863239 32 100.0 34 NNNNNNNNNN ................................ TCTGCGACATGGCCGGGGTGAAGCACGGCGACAG 1863305 32 100.0 35 NNNNNNNNNN ................................ ACGAGCGTCAACGCTCAAGGGGCTGGGGGCAAAGG 1863372 32 100.0 35 NNNNNNNNNN ................................ TTATTGGAGGTGCGGCCATGTTCAAAAAGATCGCC 1863439 32 100.0 35 NNNNNNNNNN ................................ ATGGACATGGGCACAGGCAAAAGCCGCACGCTGAT 1863506 32 100.0 34 NNNNNNNNNN ................................ TTCCAACGGACCTGACCAACCATTTTGTGATCGG 1863572 32 100.0 34 NNNNNNNNNN ................................ CCTTAATCATATCAACTACTTTTGTTGGCCTGTC 1863638 32 100.0 33 NNNNNNNNNN ..........................C..... TTTTGGGGGGGGCTAGCCCTGGGCCGCGTCTGG 1863703 32 100.0 33 NNNNNNNNNN ................................ TTTTGTCGTTCGCCTGCGTGAGGGGCTATATTG 1863768 32 100.0 33 NNNNNNNNNN ................................ CCGTGACTACAAGAGCGCCCCCGGCTTTTGGAC 1863833 32 100.0 36 NNNNNNNNNN ................................ GGATAGACGTCTGCCGGGTCATCTCGCCGAAAGTGC 1863901 32 100.0 36 NNNNNNNNNN ................................ CGCGATGTAGGCCAGCAGCGCGGCAATTTCGCCCCA 1863969 32 100.0 35 NNNNNNNNNN ................................ CCCGAACCCGTGTTGATCGTCCGGGCTCATCTTAC 1864036 32 100.0 33 NNNNNNNNNN ................................ CGCGCCAAGTACGGGCGGAAGCACGTCGTCAGC 1864101 32 100.0 36 NNNNNNNNNN ................................ TCGCCACCAAAGGCCCTCGTCGGCAGGCGGCGTCAG 1864169 32 100.0 33 NNNNNNNNNN ................................ GTGGTATTCGGCCAAGGCCTCGGGCATGCTGTC 1864234 32 100.0 34 NNNNNNNNNN ................................ ATAGGCCGCCTGGATGCTGTCGCCAGCCGTGACG 1864300 32 100.0 34 NNNNNNNNNN ................................ TTCGTTTGATCATGGGAGGATAGCGGGCGTCCCA 1864366 32 100.0 34 NNNNNNNNNN ................................ AACGAAGAACTGGGAGACGAAAACAGCGCCCTCC 1864432 32 100.0 35 NNNNNNNNNN ................................ GTCGTTCATGGCCGTGACGGTGTGCATCGGCTCCC 1864499 32 100.0 33 NNNNNNNNNN ................................ GTGGTATTCGGCCAAGGCCTCGGGCATGCTGTC 1864564 32 100.0 34 NNNNNNNNNN ................................ ATAGGCCGCCTGGATGCTGTCGCCAGCCGTGACG 1864630 32 100.0 34 NNNNNNNNNN ................................ TTCGTTTGATCATGGGAGGATAGCGGGCGTCCCA 1864696 32 100.0 34 NNNNNNNNNN ................................ AACGAAGAACTGGGAGACGAAAACAGCGCCCTCC 1864762 32 100.0 35 NNNNNNNNNN ................................ AACCACGATAGCCCCTTGGTTGAGCTTCTCCTCCA 1864829 32 100.0 34 NNNNNNNNNN ................................ TGTGGTAGCTCAATTGGTCAGAGCAGGCGACTTA 1864895 32 100.0 36 NNNNNNNNNN ................................ TTGCGGTAGATGTTTCATGGGCCCCCCCCCCACCAC 1864963 32 100.0 35 NNNNNNNNNN ................................ CATGGCGACACGCCGCAAACCGCGCCGGCATCTGA 1865030 32 100.0 35 NNNNNNNNNN ................................ ATTGCCATGCTTGTTTTGGGCGCGGCCGCCCTTTT 1865097 32 100.0 33 NNNNNNNNNN ................................ GCCGCCGAAATGCCATACGAGATCGTCTACTTA 1865162 32 100.0 35 NNNNNNNNNN ................................ TAAAGCTCGACCCTCGGCAAATGTTCCCTGAGCGA 1865229 32 100.0 33 NNNNNNNNNN ................................ ACTTGAGCGCGGCTGGCGGGGCCGACAACTTGA 1865294 32 100.0 35 NNNNNNNNNN ................................ TTACCGGCCGCCGTCGCCCTTCGCCGCCCACAGCG 1865361 32 100.0 34 NNNNNNNNNN ................................ CTGGTGGGGGCCATTGTCGGCGGCGGCATGGGCG 1865427 32 100.0 35 NNNNNNNNNN ................................ TCGGCCGCGCGGCGGCTAGCCTCGCGCGCCGTCAG 1865494 32 100.0 35 NNNNNNNNNN ................................ CAGACCGGCGAGTGGGTGATCCAACGCCGCGCCGT 1865561 32 100.0 34 NNNNNNNNNN ................................ TCGAATTCAAGGGTCACCGTGTCCATGTCGGGGC 1865627 32 100.0 34 NNNNNNNNNN ................................ AGAAAGGCTTGGAAGTCGCGGGCGGAATCGAGCC 1865693 32 100.0 35 NNNNNNNNNN ................................ ACCGATCTGCAATTACGGTTCATGACGCCACAGAC 1865760 32 100.0 36 NNNNNNNNNN ................................ GCCCCGTGCGGTCTGGGGAATCGCCGATAATGGCTA 1865828 32 100.0 37 NNNNNNNNNN ......T......................... TTCGCGCGCGCGTGTACGCATATATTTGGTATTCTGG 1865897 32 100.0 1 NNNNNNNNNN .....................C.......... NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 319 32 34 GTCGCCCCTCACGCAGGGGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [6,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.60,-6.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [17-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [60.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [178,357] Score: 0.18/0.18 # # Final direction: F [5.51,0.59 Confidence: HIGH] >NC_014365 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1902371 37 100.0 33 CCTTGCTTTG ..................................... TTAACTCCTTGTTTCCTTCAGGAAATTTCCCGA 1902441 37 100.0 33 AATTTCCCGA ..................................... ACAGCAACAAGCCCTATGTGCAGTTCTACGTGA 1902511 37 100.0 36 TTCTACGTGA ..................................... TGTGGGGTGGAAAATCCTCACAACGTCTTGATTGGG 1902584 37 100.0 35 CTTGATTGGG ..................................... AGAGGTGATGGAGTCGGGCGGTGTTAAGCTCCCAC 1902656 37 100.0 34 AAGCTCCCAC ..................................... GGAAGAAAAGAGAGGAAAAGACAATGAAAATAAT 1902727 37 97.3 TGAAAATAAT ......................A.............. GGTACCCTGG ========== ====== ====== ====== ========== ===================================== 6 37 34 GTTTCAATCCGCTTCCTCTAGCGGCATCCCTCAATAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [7,11] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.10,-7.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [252,156] Score: 0/0.18 # # Final direction: R [0.78,4.87 Confidence: HIGH] >NC_014366 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 4141534 36 100.0 30 TACAAATAAA .................................... CGAAATCGCCCGCCGACAACGCACCGCTTG 4141600 36 100.0 30 GCACCGCTTG .................................... GCCGGTATCCGTCAAGCGCTAGCGGTGACT 4141666 36 100.0 30 AGCGGTGACT .................................... GTATTGGCCTTTTTCACGCACCGAACGCGA 4141732 36 100.0 30 CCGAACGCGA .................................... AAAAAAGTGCTTGCGTGGATGCGCAAGCAA 4141798 36 100.0 30 GCGCAAGCAA .................................... AGTGGGTTGTGACGGGGGCGCTGACATTTA 4141864 36 100.0 30 CTGACATTTA .................................... TTATCCCTACCGCAGATGAGCTAGCTGGTA 4141930 36 100.0 30 CTAGCTGGTA .................................... TAATGCTTGCGATGTACTCGCCAGCAGGCA 4141996 36 100.0 CCAGCAGGCA .................................... AGTACTGCGG ========== ====== ====== ====== ========== ==================================== 8 36 30 GTTCCGGATGCAGCACATATCCCGATAATGTAGACT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.60,-2.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [14,391] Score: 0.18/0.18 # # Final direction: F [0.37,0.18 Confidence: MEDIUM] >NC_014366 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 940433 29 100.0 32 NNNNNNNNNN ............................. CATGGGTTTTTGTGCCGCTTGCTCTTCTAGTG 940494 29 100.0 32 NNNNNNNNNN ............................. CGGGTGCCTGCTTTGCTGCAAGCCGCAAAAAA 940555 29 100.0 32 NNNNNNNNNN ............................C CGTTTCAGCGTCGAAAAACGGCAAAAAAACTC 940616 29 100.0 32 NNNNNNNNNN ............................. CTGGTTGTTGAGCGTTTGTTTTGCAATCGAGA 940677 29 100.0 32 NNNNNNNNNN ............................. GTATTTAATTTATTTTGGGGTTAAATGTGTAA 940738 29 100.0 32 NNNNNNNNNN ............................. CCTATCCTATTGTGGTCAAATTTTGGGCAAAA 940799 29 100.0 32 NNNNNNNNNN ............................. CGTTTTAATGTAAAAAAAAACGAAAAAAACGC 940860 29 100.0 32 NNNNNNNNNN ............................. CCCGGAAAATTTCAACCCATGAGCAGTCAAGA 940921 29 100.0 32 NNNNNNNNNN ............................. CGAAAACCTGCTTGCCAACATCCAAAAAATGA 940982 29 100.0 32 NNNNNNNNNN ............................. GAGGCACTACGTCTAAACGCTTGCGCGGTAAT 941043 29 100.0 32 NNNNNNNNNN ............................. CTCTAGGAGAGAGATAGCAGGTCGGGTTAGCG 941104 29 100.0 32 NNNNNNNNNN ............................. TGACGGGGGAGCAAAATATCCGGTAGCATTTC 941165 29 100.0 32 NNNNNNNNNN ............................. CGCTACAAGAGTGCTGGATATTCTGTCTTGCA 941226 29 100.0 32 NNNNNNNNNN ............................. CTCAACCAGATGCGCGTCAGGCGGTGTCTCTC 941287 29 100.0 32 NNNNNNNNNN ............................. CGTTACCGACTGCGCCCTCCTTGGCGCTTTGC 941348 29 100.0 32 NNNNNNNNNN ............................. ATTTTAGCAAAAATAAACCAGCGGCAGCAAAA 941409 29 100.0 32 NNNNNNNNNN ............................. TGCTGCGCGGCATAAACTGATGGGGTAACGGA 941470 29 100.0 32 NNNNNNNNNN ............................. AATTATTAAGGAAAGCCCAAACTTAGAAAGCA 941531 29 100.0 32 NNNNNNNNNN ............................. AGTTCTAGCTGGCTCATTTTGTTGGTTTTCAT 941592 29 100.0 32 NNNNNNNNNN ............................. CAATTGATTACTCCCCGCTCAAACATGCTTTC 941653 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 21 29 32 GCGTTCCCCGCATCTGCGGGGATGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [61.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [101,183] Score: 0/0.18 # # Final direction: R [0.27,0.78 Confidence: MEDIUM] >NC_014370 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================= ====== 295103 33 100.0 36 NNNNNNNNNN ................................. GTGCACGTTGAGAAAGCGCGAACTCCAATAGTTTTA 295172 33 100.0 36 NNNNNNNNNN ................................. GTACACCCTGAGAAAGCGTAATCTCCAATAATTTTA 295241 33 100.0 36 NNNNNNNNNN ................................. GTGCAATAACTGAAAGCGTTCATTCTAATAGTTCTG 295310 33 100.0 36 NNNNNNNNNN ................................. GTGCAATAACTGAAAGTGTTTTCTCTAATAGTTTTG 295379 33 100.0 36 NNNNNNNNNN ................................. TTGCACGTTGAGAAAGCCCAATCTCCAATAGTTTTA 295448 33 100.0 1 NNNNNNNNNN ................................. NNNNNNNNNN ========== ====== ====== ====== ========== ================================= 6 33 36 ACACTATTTGGAATGTTTATAGACGTTAGTGCT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [830,701] Score: 0/0.18 # # Final direction: F [0.64,0 Confidence: HIGH] >NC_014374 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 1 24 100.0 41 ........................ CCATTGGTAAATGAGATTGTGGTTACGCATCCAGAGCATAA 66 24 100.0 41 CAGAGCATAA ........................ GCCGTTGAAGTAGTCCTCGTCGTCGTGCACCACCTCCTCCA 131 24 100.0 38 ACCTCCTCCA ........................ TGATTGTAACTGGGGCGCTGACAGGGTACATGTAGGTG 193 24 100.0 42 CATGTAGGTG ........................ ACGTGCCCTATGGAACGCTGAAGGTATACCTATCAAGGTCAA 259 24 95.8 40 TCAAGGTCAA ........G............... GCCAGAGTGTCAATTAACTCCCCCAACGTAAGCGGAGGGC 323 24 100.0 36 AGCGGAGGGC ........................ ATCTCCTTCTTGTCCCTGCCCAGGTACGCAATTATG 383 24 100.0 42 CGCAATTATG ........................ TTATGTCATACTCCTTTGCTGCCTCGTGGAGCTGTCCTGCTA 449 24 100.0 43 TGTCCTGCTA ........................ TAGAGGACTTTCTTAACAACGCCATTGATATCCTTGTAATCAG 516 24 100.0 37 TTGTAATCAG ........................ TAGAGCATATAAAGGAGGAAGATATCGAGAAGTTCCT 577 24 100.0 36 AGAAGTTCCT ........................ GCCAAGCACAAGCGACAACCCTAACCGCCCCCATGT 637 24 100.0 42 GCCCCCATGT ........................ CAAGAGAAGTTTTATTTGACGCAGTAGACAACAAGGAAAGAG 703 24 100.0 36 AAGGAAAGAG ........................ GCGTAGACCTGGAAGCGGTACTCTGCGTAGACAAGG 763 24 100.0 37 GTAGACAAGG ........................ ACATTTTGTTTAGGCAGAGGACAGCAAATTTAACAGT 824 24 100.0 46 ATTTAACAGT ........................ TAAATAACTCTCTCGTTCTCGTCTACCTCATAACGGTCGTTCCTAA 894 24 100.0 44 TCGTTCCTAA ........................ CAAGTTTGTTCAGAAAATTGCCTTGAAAGATTCAAGCTATTTCT 962 24 100.0 41 AGCTATTTCT ........................ TCGGAAAGAGAGGAAAGAAGGGAAAGGGGTAACGTTGTTAA 1027 24 100.0 ACGTTGTTAA ........................ CGAGCCCTGA ========== ====== ====== ====== ========== ======================== 17 24 40 GTTTCAACACCATTCCTTGGTTTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [38.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [2,192] Score: 0.18/0.18 # # Final direction: R [0.27,0.59 Confidence: MEDIUM] >NC_014374 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 1415505 24 100.0 37 CCAAGGCTCG ........................ AATACTATTAGTTATCACAGAGCGTTTATAAATTTTC 1415566 24 100.0 41 ATAAATTTTC ........................ CAGGGTAAATACGTCGGCCTTGCCATAGGTGCCATTCTCAG 1415631 24 100.0 42 CCATTCTCAG ........................ CTATTTTAGTCCTCGGCATGGGCGGAAGCGGCAAGACTTACT 1415697 24 100.0 46 AAGACTTACT ........................ CTCGCCCATGTTAGCCAGCGCAACCGCAGCGTCTGCTAGGTCGCGG 1415767 24 100.0 40 TAGGTCGCGG ........................ TTATTCAAGAAAAAGTCCCGGGCAAAGGCCCTTACGCTTG 1415831 24 100.0 40 CTTACGCTTG ........................ GTTAGCCTTTATGTAGTCCTCTATAGCCTCCCGGACTATT 1415895 24 100.0 CCGGACTATT ........................ AGAATCCGT ========== ====== ====== ====== ========== ======================== 7 24 41 GAATCCGCTCAATGGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [31.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [415,81] Score: 0.18/0.18 # # Final direction: F [4.68,0.27 Confidence: HIGH] >NC_014374 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 15682 24 100.0 37 NNNNNNNNNN ...T......A....TA....... AGTGTCGAGGATATGTTATAAGCATAGATTTCCTCTT 15743 24 100.0 37 NNNNNNNNNN ........................ GCGGATGTATCACCTAAAGCCGAAGTTTGTGATAAGG 15804 24 100.0 39 NNNNNNNNNN ........................ TGGATTACTTGCGGCAAACATACTTAGTTTCTACTCTTT 15867 24 100.0 43 NNNNNNNNNN ........................ CCGAGTATGTTCACGTCCTCTGCCTCAGAAAGGCCGAGCCTTT 15934 24 100.0 41 NNNNNNNNNN ........................ GCAGGCTCTGGAAGGCCATACTGTCCCTACAGAACCCAGAC 15999 24 100.0 41 NNNNNNNNNN ........................ TTTCTATCTGAGGCGTGAGAGCATGGGTGAGAGGGTTTCTC 16064 24 100.0 42 NNNNNNNNNN ........................ GAAGTTTAAGCTATTCTTGCTAACACATATCAATCAACTCAA 16130 24 100.0 40 NNNNNNNNNN ........................ AGTTTTTATGAAAAAATCCTTAAAGAACTTGGCCTTTCTT 16194 24 100.0 41 NNNNNNNNNN ........................ GCGTTTATTCACGCGACCTGGGGCAGCGCAACAGTGGAAGA 16259 24 100.0 40 NNNNNNNNNN ........................ GCGTCTTTCTTTATAATTGACCATTCATGAATTTTGTTTT 16323 24 100.0 41 NNNNNNNNNN ........................ GTTGTATACGATAACTACGGGTTCTGGGTCCATCCAACCTT 16388 24 100.0 41 NNNNNNNNNN ........................ TACAAACACGTTTGCCTGTTTGAAGAAGCTGGGCCTTATAG 16453 24 100.0 38 NNNNNNNNNN ........................ GTCTCAGAATGAAAGCTCGGAGGGGACTCCCCAGACTC 16515 24 100.0 42 NNNNNNNNNN ........................ CGAGAGACGTGAGCGAGGTGAGGAATGTGGAGAGCGAGTTGG 16581 24 100.0 44 NNNNNNNNNN ........................ ACGGGGAAAGAAACCATCACCGGAACGGTAGTAGGGGGGAATGA 16649 24 100.0 38 NNNNNNNNNN ........................ GGCTGTTCAGTGCCTGCAGGAGCACCCAGAGTACTTGG 16711 24 100.0 41 NNNNNNNNNN ........................ GAGGTGCTAAAGAACGGGTTCACATCTGTCGTGGGCCACCC 16776 24 100.0 40 NNNNNNNNNN ........................ AGGAAGTTCAGTTCGTTGAACTTCTACGACATAATCTTTT 16840 24 100.0 42 NNNNNNNNNN ........................ TAGCCGTTCGGGATTGACGTGGAACGGCTGCGCTCTTATGGG 16906 24 100.0 37 NNNNNNNNNN ........................ ATTACATCTCAAGATCAGGGCTAACATGGAGCGGTTG 16967 24 100.0 43 NNNNNNNNNN ........................ TATTCATTATGGACAAAGCGGTTCAATGTTTACAACAACACCC 17034 24 100.0 39 NNNNNNNNNN ........................ TCGTATGGGTCTTTTTTGGGCTCTACGCATGTTTGGAAA 17097 24 100.0 39 NNNNNNNNNN ........................ TCAGCGCTACAAACATGTCCTTCCCAGCTGGCTACATAG 17160 24 100.0 39 NNNNNNNNNN ........................ TAGCTCTTTTTCTTCGCCTTGCCCCATGGCCCCATGGCC 17223 24 100.0 42 NNNNNNNNNN ........................ TATCAGGAGGTTGCCATCAGCATTTGTTCTGGCTGGGGCTAG 17289 24 100.0 1 NNNNNNNNNN ........................ NNNNNNNNNN ========== ====== ====== ====== ========== ======================== 26 24 40 GTTACAACACCATCTCGTGGTTTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.17%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.40,-2.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [30.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [216,678] Score: 0.18/0.18 # # Final direction: R [0.27,0.96 Confidence: MEDIUM] >NC_014374 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 19724 24 100.0 38 CCAGAGCTCG ........................ TCTCTAAATACAATCGGCTTCTGATCCTTGGTAAATGC 19786 24 100.0 40 TGGTAAATGC ........................ CCTCATGTTCATTGGGATATAAATTGACAACTATCCACGG 19850 24 100.0 42 CTATCCACGG ........................ GCTTCATGCCGATAAGGCCGGCTGACCTAAATTGGTTAAGAA 19916 24 100.0 43 TGGTTAAGAA ........................ CATAGAAAGATAGTTTCAGGGGTTTAAATTTCCATAGGTTCAG 19983 24 100.0 41 ATAGGTTCAG ........................ TGACGTTAGCGTGAACGGGGACAGGATAAGCATAACTATAA 20048 24 100.0 39 ATAACTATAA ........................ ACTAGAACTTTATCCATGTCCACAAACCATGTTATGGCC 20111 24 100.0 50 TGTTATGGCC ........................ CGAGAAACCAATTAACTTAGACGCATACAAAAAGATAATTAACGAGTCAA 20185 24 100.0 43 AACGAGTCAA ........................ TAAGTATCTTCAAAGCCCTTATAAAACTTGCTACCCTCTTGAA 20252 24 100.0 40 CCCTCTTGAA ........................ ACGCAATCATAGCCTTTGATGTTATCGCCACAGCTAACTA 20316 24 100.0 40 CAGCTAACTA ........................ CCTCCACTGGCCTGTAGGTATAGTTTGCGAAGTGGTATGC 20380 24 100.0 42 AGTGGTATGC ........................ CAAAAGTCCGTGTGGTCTTCCCCCTCAAAATCGAAATATTGC 20446 24 100.0 GAAATATTGC ........................ TCTGCACAGT ========== ====== ====== ====== ========== ======================== 12 24 41 GAAACCAAGGAATGGTGTTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [38.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [836,2001] Score: 0.18/0.18 # # Final direction: R [0,0.45 Confidence: MEDIUM] >NC_014374 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 20590 24 100.0 44 ATAATAATAT ........................ CTGCTATTATTTCGCTTGCATAATCTGTTGGCATACCCCTGTGG 20658 24 100.0 42 ACCCCTGTGG ........................ ATCAGCGTAAGCTGTTCATACTTCCTCTGTGCAATTACAGTC 20724 24 100.0 40 AATTACAGTC ........................ ACTTTCCACTCATATCTATTCTGAACGTCAACAATATACA 20788 24 100.0 37 ACAATATACA ........................ AGGTTATACTGCCCCCAGCGGCTTCGGCCTCCCCAGC 20849 24 100.0 37 CCTCCCCAGC ........................ CCATAGGGGAAGCTCCACTTCTTTCACAAACTCTGCG 20910 24 100.0 38 AAACTCTGCG ........................ GCAGCTTTGCCAGTTCTCCCTCAATAGTGTATTCATAT 20972 24 100.0 36 GTATTCATAT ........................ TTTATGATATTAACGGTAGGCGCCGTGAGGACTATA 21032 24 100.0 38 GAGGACTATA ........................ CTTGCTATCACGTCCCTAACGTTCATGCCCCTGGTCTT 21094 24 100.0 39 CCCTGGTCTT ........................ TGGGGCCATTCTCTGCTATCTCATACACTTCTTTCATAT 21157 24 100.0 TCTTTCATAT ........................ ACTTGACCTC ========== ====== ====== ====== ========== ======================== 10 24 39 GAAACCAAGGAATGGTGTTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [860,1290] Score: 0/0.18 # # Final direction: F [0.27,0 Confidence: MEDIUM] >NC_014374 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 21353 24 100.0 46 TTGTGCCGCC ........................ GTAGGGACCAGTAATGACCGTGCTTCAGGGAGGAATAGGAGGAAAC 21423 24 100.0 38 AGGAGGAAAC ........................ AGTTCTTCAAACATCGCAAAAATAGCTGAGGAAAACGT 21485 24 100.0 44 AGGAAAACGT ........................ TTTATATAAAACCTGGTGAACTACATGGCTACTCGTAAGCTTCT 21553 24 100.0 40 GTAAGCTTCT ........................ ATCCTAATGACGTCCATTGGCACTCCAGGGACTTCCTCAA 21617 24 100.0 40 ACTTCCTCAA ........................ TAGATATTTGGGCTCACGAAAATCTTTCTGTCATGAAGTA 21681 24 100.0 46 TCATGAAGTA ........................ TGCTGGATGCCGGTAGCGGGCCCCTTGGCACTTCTACGGTAGAACA 21751 24 100.0 36 CGGTAGAACA ........................ ACTACGCCGTGGAGGCAATGTCCTTTGCTCTCGAGA 21811 24 100.0 40 GCTCTCGAGA ........................ GTCCTCACCAGGCCCACAAGTTCAATTGGTGTTTTAGCGA 21875 24 100.0 41 GTTTTAGCGA ........................ ACTTCCTGCGCGCTCACGCTCTCTCGCCTCGCTTTTCTGTG 21940 24 100.0 40 CTTTTCTGTG ........................ TCTTATTTCTTCGCCGCCCCAGGCCGCTACTATTTCCGCG 22004 24 100.0 40 TATTTCCGCG ........................ CAGGTGAAACAAAATATAATATGTCAATTGCGTTGTTTAG 22068 24 95.8 40 CGTTGTTTAG .....T.................. ATGCACCACAAGGTAGTATCCTTCGTCGAGATACCTACTC 22132 24 100.0 37 ATACCTACTC ........................ TCACTGTTTCCCTCGCACGGGTTGGGTAGATTCCACG 22193 24 100.0 45 AGATTCCACG ........................ TGTGGCAAGCTTTCTCCTTTGCTTTATCTCGCTTATTGTCTTTGC 22262 24 100.0 42 TTGTCTTTGC ........................ ATGGCGTTCTGCGCAAGAATGCCGTGCTGTGGTATGTCATAG 22328 24 95.8 41 TATGTCATAG .....T.................. ACCTCCCTCTTCAATTCTTCTTCCAGACTCTCCCCCACCTG 22393 24 95.8 CCCCCACCTG ..............A......... TGGAAAGCGG ========== ====== ====== ====== ========== ======================== 17 24 41 GAAACCAAGGAATGGTGTTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [48.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1623,54] Score: 0.18/0.18 # # Final direction: F [0.59,0.27 Confidence: MEDIUM] >NC_014374 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 5773 25 100.0 39 CCATGGCTTG ......................... GAAGACCAACAGACTCAGGCTCTGAGTCAGGAAGCCTAA 5837 25 100.0 42 GGAAGCCTAA ......................... AACTCCGTTACGTCAATGTCTACCGTGATCATGATGTCAGCC 5904 25 100.0 41 GATGTCAGCC ......................... GGTTGAACGCTACTTGTGCTAGAAAGTCGTCATCGTTTTCA 5970 25 96.0 38 ATCGTTTTCA A........................ TAGAACGTTAGCGGAATGACGCCAAGCTGGAATGCCGT 6033 25 100.0 37 GGAATGCCGT ......................... TTGCCCTGGCGTGGACCTTAGAACCCTGGTGCCTTGA 6095 25 100.0 44 GGTGCCTTGA ......................... CTGGGGAGCATGCCTAGGGAGAAGGCGTTGGCTAAAATAACCCT 6164 25 100.0 41 AAATAACCCT ......................... TGAGGCATGGCCTCAGGGTCAAGGCGAAAGAAAGAAATGAA 6230 25 100.0 38 AAGAAATGAA ......................... TAGTGAAGTCCTTCAGTTCGGCCAAAAAAGCGCCATCA 6293 25 100.0 AGCGCCATCA ......................... GTCTCAATGA ========== ====== ====== ====== ========== ========================= 9 25 40 GGAAACCACGAGATGGTGTTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.10,-2.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [28.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [398,264] Score: 0/0.18 # # Final direction: F [0.37,0.27 Confidence: LOW] >NC_014376 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 3439453 20 100.0 52 NNNNNNNNNN .......A............ CCGTTGGCTGGGTTTGAGGCTGTGGTGTTGGCTGCGTCATTGGCTGAGTTGT 3439525 20 100.0 28 NNNNNNNNNN .................... CCTGCGGCTGCTGTGCTGGCTGCGTCCG 3439573 20 100.0 40 NNNNNNNNNN .................... CCGTAGGCTGTGTCATCGGCTGCGTCATCGGCTGGGTTGT 3439633 20 100.0 28 NNNNNNNNNN .................... TCTGCGGCTGCTGTGCTGGCTGCGTCCG 3439681 20 100.0 40 NNNNNNNNNN ......T............. CCGTAGGCTGTGTCATCGGCTGCGTCATCGGCTGGGTTGT 3439741 20 100.0 28 NNNNNNNNNN .................... TCTGCGGCTGCTGTGCTGGCTGCGTCCG 3439789 20 100.0 40 NNNNNNNNNN ......T............. CTGTAGGCTGTGTCATCGGCTGCGTCATCGGCTGGGTTGT 3439849 20 100.0 52 NNNNNNNNNN .................... TCATCGGCTGTGTCTGTGGCTGCGTCATCGGCTGCTGTGTGGGCTGCGTCCG 3439921 20 100.0 52 NNNNNNNNNN .................... TCATCGGCTGTGTCTGTGGCTGCGTCATCGGCTGCTGTGTGGGCTGCGTCCG 3439993 20 100.0 52 NNNNNNNNNN .................... TCATCGGCTGTGTCTGTGGCTGCGTCATCGGCTGCTGTGTGGGCTGCGTCCG 3440065 20 100.0 40 NNNNNNNNNN .................... TCATCGGCTGTGTCTGTGGCTGCGTCATCGGCTGCTGTGT 3440125 20 100.0 40 NNNNNNNNNN .................... TCATTGGCTGCGGTGTGGGCTGCGTCATCGGCTGCTGTGT 3440185 20 100.0 28 NNNNNNNNNN .................... TCATCGGCTGTGGTGTGGGCTGCGTCTG 3440233 20 100.0 40 NNNNNNNNNN .................... GTGTGGGCTGCGTCATGGGCTGGGTTTGTGGCTGCGTCCG 3440293 20 100.0 28 NNNNNNNNNN .................... GTGTGGGCTGCGTCATGGGCTGGGTTTG 3440341 20 100.0 1 NNNNNNNNNN T.........CGG.....A. NNNNNNNNNN ========== ====== ====== ====== ========== ==================== 16 20 39 GGGCTGCGTCATCGGCTGCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1994,582] Score: 0.18/0.18 # # Final direction: F [0.59,0.37 Confidence: LOW] >NC_014376 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 3805505 20 95.0 64 GATAATATCT .....T.............. TTGACCGGTGCCGGTGACACTGCCGGTGTTGTAGCAGCTTTGTACCGTACTGCCGTAAACCCGT 3805589 20 95.0 64 GTAAACCCGT ...................T GCTTGTGCCGCTGACGCTGCCGGTGTTGTAGCAGTTTTTCATGGTGCTGCTACCGCTAATCTGC 3805673 20 100.0 61 GCTAATCTGC .................... CTCAGAGCCGCTTACATTTCCGGTGACATAGCAGTTTTCCGCCGTGCTGCTATCAACATAC 3805754 20 100.0 ATCAACATAC .................... ATCGCCGGTGA ========== ====== ====== ====== ========== ==================== 4 20 63 CCCGCCACGCCGCCGACATA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [4,1] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [36.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [6473,1323] Score: 0.18/0.18 # # Final direction: R [0.55,0.68 Confidence: LOW] >NC_014377 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 526446 30 100.0 38 ATTTTAACGG .............................. GGGGATCTTCCATGGCGTAAAATAAAAAATACTGAAGA 526514 30 100.0 36 ATACTGAAGA .............................. CCCGTCCGTAGCAACCGGAATATACTTCAGTCGAAT 526580 30 100.0 36 TCAGTCGAAT .............................. CAGGTATATCGAGCCCTGCAAAAGCGGCAGTGATCA 526646 30 100.0 36 GCAGTGATCA .............................. AAACTGGAAAGCTCGTCTATTATCACCATATCAAAA 526712 30 100.0 40 CATATCAAAA .............................. CGGCATCCGGATCAATCTCATCGAAGGTTACCGATACTGG 526782 30 100.0 35 CCGATACTGG .............................. ATTGGATGCTGCGTATCCGCAGTCCACTCCGCTAC 526847 30 100.0 37 ACTCCGCTAC .............................. ATTCCGTGTTAGTAAGGTGTTTCTCGTATATCTCGTC 526914 30 100.0 35 ATATCTCGTC .............................. CCAGCTTGGACGGCTCCTGGGTGCTGGACGGCACC 526979 30 100.0 36 GGACGGCACC .............................. ATTTAGTTACGGTGCGGACAAAGACACATTTTTTAT 527045 30 100.0 38 CATTTTTTAT .............................. ATTAGTTCTCCGTCTACCGTTTCGAGGTCCCGAACTTC 527113 30 100.0 37 CCCGAACTTC .............................. CCGAAAGAAAAAGATTGAGTGTAAATTAAATGAACTT 527180 30 100.0 36 AAATGAACTT .............................. AATATATTCCATATTAGACGCAAAAACCACCTTTCA 527246 30 100.0 38 CCACCTTTCA .............................. TCTACCTGTTTAATCATTGATATAACGGGAGCTACTCC 527314 30 100.0 35 GAGCTACTCC .............................. TGCCACAATTGCCGGCTCAGTTTATCCTCTCTCTC 527379 30 100.0 38 CCTCTCTCTC .............................. GGGTATCGTACACAGTTTTACTGTTCCGCCGTATATAG 527447 30 100.0 36 CCGTATATAG .............................. CATAGTCCGGGCCATAGCAGAGACCACAAACTACGA 527513 30 100.0 38 CAAACTACGA .............................. TGCTTAAGGATAGGCTTAAAGAACTACGCAATAAAAAA 527581 30 100.0 38 CAATAAAAAA .............................. TAGACAATTTATACGCGTCCTATGTTATAGCCTTCTGT 527649 30 100.0 37 AGCCTTCTGT .............................. ATACGCCACATCACGCAAGAATAAAAATCGAAAATAA 527716 30 70.0 45 TCGAAAATAA .....................--------- ATTGAAACATATACTTCAGGCTATGGGGACAATGCCAACGACGTG 527791 30 100.0 37 CAACGACGTG .............................. TAGGCTTGTCCCTCCTACATAGATTCTTGTCTTTATT 527858 30 100.0 40 TGTCTTTATT .............................. TCAGGCAAGAATATTCACCGCTAACCAAAGGATACTTCAT 527928 30 100.0 36 GATACTTCAT .............................. GACCATCTATAACACTAAAACCTTGCTGGCTGCTAT 527994 30 100.0 39 TGGCTGCTAT .............................. GCGCCAAGAATCTCCGAAGTAGTGCGCCGTATTGGTCCT 528063 30 100.0 37 TATTGGTCCT .............................. TTGGATGAGCCTATGACTGTGGCTCATGCCAGGCTGA 528130 30 100.0 36 GCCAGGCTGA .............................. GCCCCTCCCATCAGATGGAACCGGTTCGTGCCGTTT 528196 30 100.0 37 CGTGCCGTTT .............................. ATCTTCCGGTTCTTAATTTTGCCGTATCCACACCCGA 528263 30 100.0 37 CCACACCCGA .............................. TTCAACAGTAGTCTTTTTTCTGCCTCCACCAAACAAA 528330 30 100.0 38 ACCAAACAAA .............................. CGCTCTCGACAACCGACACCAGCGTGACGCCCGTCCTG 528398 30 100.0 38 GCCCGTCCTG .............................. GGCTATCCAATTGTCCCTCGCCAGGCAGGAAACCAAAA 528466 30 100.0 39 GAAACCAAAA .............................. AAGCTACGTATAGAAATTACCTCGACTAAAATTATAGAT 528535 30 100.0 37 AATTATAGAT .............................. TCTACTCCATCGCCAACAACATGGATCTGCCCGGTGA 528602 30 100.0 37 TGCCCGGTGA .............................. ACCAATCGAACAATGACAAAAGGGAAATCCGGATCGG 528669 30 100.0 38 TCCGGATCGG .............................. AGGAAAAAGCAATTGAAATTTGCGACTTTATTAGGGAG 528737 30 100.0 38 TATTAGGGAG .............................. TTATACAGTTTGTCATTACGACCGCACGCATAGGCGGC 528805 30 100.0 36 CATAGGCGGC .............................. AAAAGGCCGACACTCTGGCACATAGCCAGAAATGTC 528871 30 100.0 37 CAGAAATGTC .............................. TAGGAAAAGTCTTATTAGAAAAGGAGGCATAATATGG 528938 30 100.0 36 CATAATATGG .............................. CCTAATAGATTATTTAGTATGTTTTTTATCTCTCCT 529004 30 100.0 36 TATCTCTCCT .............................. GAGGTTTTCCGCCTTCGTTAAGGAGCTCCTGGAAGA 529070 30 100.0 36 TCCTGGAAGA .............................. TCGCCAAGGCCCATCTCCTCGAACGTGGGCTTCCAC 529136 30 100.0 GGGCTTCCAC .............................. TGGCCCTGTCCCACACCTGTTCTTTTCGTGCGATCCAT ========== ====== ====== ====== ========== ============================== 41 30 37 GTTTTTAGCTTACCTATGAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.80,-0.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [471,159] Score: 0.18/0.18 # # Final direction: F [5.82,0 Confidence: HIGH] >NC_014377 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1643952 30 100.0 35 AATTTTACGG .............................. AGAAATAATAATCGAATAACCTATCATTATTATGA 1644017 30 100.0 37 ATTATTATGA .............................. CCGACCGTTTTTCCGCCTGATGGATTTTCACTTCTTC 1644084 30 100.0 36 TCACTTCTTC .............................. CATGGACAATAAGAAAGAGCTAATTGCAGAAATTAT 1644150 30 100.0 35 CAGAAATTAT .............................. CCAGCTGCGAGAAGCGATTAAGGCGGAGAAGGACA 1644215 30 100.0 38 GAGAAGGACA .............................. AGGGTGTATTTGCTTCGCCTTCTATGGCGACTAACCTG 1644283 30 100.0 37 GACTAACCTG .............................. ATGAAATGGGATTCATTACGCCAGCAATCAGCTCAGG 1644350 30 100.0 36 TCAGCTCAGG .............................. ACATGGCATTAGCAACGTCTATGATTGAGAGCCCGA 1644416 30 100.0 36 GAGAGCCCGA .............................. CTTGTATATCTCGCACCTGCCGCCTACCGCATAGGG 1644482 30 100.0 38 CCGCATAGGG .............................. TTATAAGGCAGGAGTATTCGCCGCTCACCAAAGGTTAC 1644550 30 100.0 38 CAAAGGTTAC .............................. ACACAAACCTCCCCCGCTTCGAGCAGGGTGCATTCAGC 1644618 30 100.0 37 TGCATTCAGC .............................. TACAGCCGCCACATCGCCTCTTTTTGCCCCGCTATAC 1644685 30 100.0 36 CCCGCTATAC .............................. CCAAAAGATAGCCCTACAATCTGGTCTGTAAACAAA 1644751 30 100.0 37 TGTAAACAAA .............................. AAGCGTTCTTTAAGACTACTAGCTTGAATATCTAACC 1644818 30 100.0 37 ATATCTAACC .............................. AACTCTTGCTCTTTCATAGGCATCTACTCCTTGAAGA 1644885 30 100.0 TCCTTGAAGA .............................. CTCACAACGGATTGAAAAAAGTTTGCCGCTACCCAAG ========== ====== ====== ====== ========== ============================== 15 30 36 GTTCTTAGTCTACCTATAAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.80,-0.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [73.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1073,166] Score: 0.18/0.18 # # Final direction: F [5.32,0 Confidence: HIGH] >NC_014377 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 541723 30 100.0 36 TTTTTCACGG .............................. AGATTTACTTGATATATATTCCCCTGCCTATCGCGG 541789 30 100.0 42 CCTATCGCGG .............................. TCGGCGAAATGACGAGAAAGCCCGCAAAAAAGTAGTCCTTCG 541861 30 100.0 38 TAGTCCTTCG .............................. GAGACATTTCTCGTATTTGCGTAGGTCTGGTTTTTCGG 541929 30 100.0 37 GGTTTTTCGG .............................. CTGATTGATTATTTAGGAGCCGAAGACACGGAATATA 541996 30 100.0 37 ACGGAATATA .............................. GGGACTCAACAGAATAACTTTATCAAACCTGATTATA 542063 30 100.0 37 CCTGATTATA .............................. ATCCACACGTTCGTAAAAATAATTCTGTATGCCATAG 542130 30 100.0 37 TATGCCATAG .............................. AATTCCGGCTGATCAGGTCTTTCTACATCTCCATCTC 542197 30 100.0 36 TCTCCATCTC .............................. AAATTTATTTCCCCACTTTATCCGAAGAAACAAAAA 542263 30 100.0 36 GAAACAAAAA .............................. TGCTGCCGCACATAGGACAATATCTTGCATTACTAG 542329 30 100.0 37 GCATTACTAG .............................. CACCGTAATCGATATAAATTCTCCACTTTATACCCAG 542396 30 100.0 36 TTATACCCAG .............................. TAGGTCTTATGGATAAGTTCGTTTTGTGTTGTGATA 542462 30 100.0 37 TGTTGTGATA .............................. GTACTGTAGTCGACTGGGGCTGCCCTGTGGCCCTAGT 542529 30 100.0 36 TGGCCCTAGT .............................. TTTAGTTTTGACTTATAGGAATATGGAGAGATTAGA 542595 30 100.0 37 AGAGATTAGA .............................. ATTGATTTATTATTGGTATTTAAAGAAAATAGATGGT 542662 30 100.0 37 AATAGATGGT .............................. AAAAGCTCCCTTTCGGTAAGAAGATCCATGGAACCAT 542729 30 100.0 36 ATGGAACCAT .............................. TGGCATCCCGTTTACAAAAGTGAATAATCTTTTCGA 542795 30 100.0 36 ATCTTTTCGA .............................. ACGAGGATCCCCTTCCAGGAATGGACATAAGCGAGG 542861 30 100.0 39 ATAAGCGAGG .............................. TTCAAACCCCACCGCCGTGCTGCTTCTGCTGCTGTGATC 542930 30 100.0 37 TGCTGTGATC .............................. GCGGTTACAATTACAAGCGTAAGACGCATTGAGCAAG 542997 30 100.0 38 ATTGAGCAAG .............................. TCCAGGGATCGGGTGCAGATATGGTGAAGCTAGCTTCT 543065 30 100.0 36 GCTAGCTTCT .............................. CTGCAAACATCCTAGCTAAAAATGCAGGCGTAGACG 543131 30 100.0 38 GGCGTAGACG .............................. TTGCCATTATTTTATATTTATCATTGCCATCAAAAACA 543199 30 100.0 41 ATCAAAAACA .............................. GTGTTTGTGCTTTTATATGGTTACTAAAACATATAGGTATA 543270 30 100.0 36 TATAGGTATA .............................. CTAGATTGGTTAATGGGGGTTTCTGATGTTCGTAGC 543336 30 100.0 37 TGTTCGTAGC .............................. TCAGGAATAAGCTCAAGCGTCTTATTCCTGGTCCGGG 543403 30 100.0 CTGGTCCGGG .............................. AACAATATGCT ========== ====== ====== ====== ========== ============================== 26 30 37 GTTTTTAGCCTACCTATAAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.80,-1.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [223,99] Score: 0.18/0.18 # # Final direction: F [5.32,0 Confidence: HIGH] >NC_014377 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 544868 30 100.0 36 TCTATATAAA .............................. AGATCGTAGCGGCGACAATAGCAAGAAACTGGTCGA 544934 30 100.0 38 AACTGGTCGA .............................. ATGGATAAGATTTATAGACTTCAGAATGGGGAAATTAC 545002 30 100.0 39 GGGAAATTAC .............................. AGTCAATGGCTTTGGCTCTAGCAGAGCCTTTCTCTTCAC 545071 30 100.0 37 TTCTCTTCAC .............................. CGATATGGCGGTATCTCAAGTGGCAGAGGTTGCAATA 545138 30 96.7 38 GGTTGCAATA ..........C................... ATTGAATCCATATTCTTTTTTCGAGGGACAAAATCGAA 545206 30 100.0 CAAAATCGAA .............................. TATTCTCTTGCAGGGATATCGATTTGTGCCACATA ========== ====== ====== ====== ========== ============================== 6 30 37 GTTTTTAGCCTACCTATAAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.80,-1.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [75,1110] Score: 0.18/0.18 # # Final direction: F [5.28,0.18 Confidence: HIGH] >NC_014377 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 73465 30 100.0 37 TATTTCATGG .............................. GAGCTGATATAACTGATAATGCTGGTGGAATAGCTGA 73532 30 100.0 36 GAATAGCTGA .............................. CCCCTACTTTAAATTTGTCCGCTATGCTCGCTTTCG 73598 30 100.0 39 CTCGCTTTCG .............................. TCCAGTAACTCCTGTATGACTTTCTTCTTCATATCTCGC 73667 30 100.0 38 CATATCTCGC .............................. CCGCCTCTCGGTATCCATTCCGCTCCAGTAGTGCAAAA 73735 30 100.0 37 TAGTGCAAAA .............................. GAATCCGCCCCTAATTCTTTTGATACAGAGCCGAAAA 73802 30 100.0 37 GAGCCGAAAA .............................. CCGCCTCTCGGTATCCATTCCGCTCCAGTAGTGCAAA 73869 30 100.0 38 GTAGTGCAAA .............................. ATACCTCATCCTCGCCAGTCAGATCGTTCCAGAAGGGC 73937 30 100.0 38 CCAGAAGGGC .............................. AGGTATCTGACTATGCTTTCTAATGCTGAGATAACAAG 74005 30 100.0 37 AGATAACAAG .............................. GCGATATATTCGCTGTTTTTCTTGAGGAGGAAATATC 74072 30 100.0 39 AGGAAATATC .............................. GCGATATATTCGCTGTTTTTCTTGAGGAGGAAATATCGA 74141 30 100.0 40 GAAATATCGA .............................. CACCTCGCTCCCGGCGGCACGCATAAGACCACATTTCTGG 74211 30 100.0 38 ACATTTCTGG .............................. ATGGCATCACGATCAAGACCCCGACCGAACTAAAGGTC 74279 30 100.0 38 ACTAAAGGTC .............................. GCGGTTCCCGTAGAAAAATATAGGGAACTCCAATAGCT 74347 30 100.0 37 TCCAATAGCT .............................. CTTCTCCCCTACTCTCCCCTACCCTACCCTGTTGTGT 74414 30 100.0 35 CCTGTTGTGT .............................. AGATTATTTATTTCTTCCTCAAAGTGATGGTAAAA 74479 30 100.0 37 GATGGTAAAA .............................. AAGAAATACCTGCACGCAGGTGGACTGCAGAAAGTGC 74546 30 100.0 38 CAGAAAGTGC .............................. TCCGATCGTATGGCGACCAGTTCCTTCGCTCTCTCCCA 74614 30 100.0 38 CTCTCTCCCA .............................. CGATTGGCGGGTCAAGAGAGTATGACAAGAGCAGAAGC 74682 30 100.0 37 GAGCAGAAGC .............................. TTGAAAAAGCTATACGACCGTCCATATAAATACTCGT 74749 30 100.0 38 AAATACTCGT .............................. CGATTGGCGGGTCAAGAGAGTATGACAAGAGCAGAAGC 74817 30 100.0 38 GAGCAGAAGC .............................. GAGCAATCGAAACAGCGATAACTGTTGGCGCTCCAGTA 74885 30 100.0 35 CGCTCCAGTA .............................. AGGATGATATCCGGTGATGTTCGGGCACTTACCGG 74950 30 100.0 37 CACTTACCGG .............................. TATTTCTCCCGCTCACGCTTGAGGCGTTCGGAAAGAA 75017 30 100.0 37 TCGGAAAGAA .............................. CGGTTATAGTCGGGCTCTCAATCATAGGCGTTGCTAA 75084 30 100.0 36 GCGTTGCTAA .............................. CAAGACAGAGAGCCGAGGAATACACGAGGCGAGCTT 75150 30 100.0 38 AGGCGAGCTT .............................. ATCTATTGCTACCGCGTCGATTTCGGCTTCTATTTCTT 75218 30 100.0 42 TCTATTTCTT .............................. TACATACTCCCCCATGTGTAATGGGATTGGGGAGTATGAGTA 75290 30 100.0 36 AGTATGAGTA .............................. AATTCTAATCATAGAATAGCATAGATGGAATAAGAA 75356 30 100.0 39 GGAATAAGAA .............................. CTCGATTTTTTCTTCAATAGCCGCCGAGGCGATGGAATT 75425 30 100.0 36 CGATGGAATT .............................. ATTCATTCATATTGACACTCTCCTTTCGGTGTTCAA 75491 30 96.7 38 CGGTGTTCAA .....................A........ CTAAAATGCTTTTCTATTGTTTCGGGTGAATATATGCG 75559 30 100.0 36 AATATATGCG .............................. AGCGGAAGGGCCCGAAGGCCCTGGCCGGGATTCTCG 75625 30 100.0 36 GGGATTCTCG .............................. TACCCACAAAGGAGGGATTTTACAATACACCCCCGG 75691 30 100.0 37 ACACCCCCGG .............................. GGGTATGACGAATTTGCAAAAGAATTAGGATTCGATT 75758 30 100.0 36 GGATTCGATT .............................. TTTCGTAAACCGATTTAAAAATCCTTCCTTCGCCGC 75824 30 100.0 38 CCTTCGCCGC .............................. TAGGTAATGTATTTGCAACCGCCGCAACCTTTTTCTTT 75892 30 100.0 36 CTTTTTCTTT .............................. AAATTTCCGTTTATGTGAAAATATCTTTTTCGTAAA 75958 30 100.0 36 TTTTCGTAAA .............................. GAGTACTGTTTTTTATTTTTTTAAGGTAGTACTAAA 76024 30 100.0 40 TAGTACTAAA .............................. CCGCTCCTGAAGTGCCTAATATCGCTGGCGGCGTCGGCGG 76094 30 100.0 35 GCGTCGGCGG .............................. TCGAAGAAAAATAGCCGCCAGCGTCGGCGATTTCA 76159 30 100.0 37 GGCGATTTCA .............................. CCTTCCTGCCGAGCCGCAAATATTCGGTGCTGGTCTC 76226 30 100.0 37 TGCTGGTCTC .............................. CGGGGACACCGGTCACCCAGGGGCCGTTAGACTTCTT 76293 30 100.0 41 TAGACTTCTT .............................. ACGACATGGAATACAATTTCATCTAAGCTAGGGGATATATG 76364 30 100.0 39 GGGATATATG .............................. TAAGATAGATATGCAGCATCCTCGTATTCTTCGCACATT 76433 30 100.0 35 TTCGCACATT .............................. CAGTTAGCGGCGGCACCAGCGGCAGCTTCCTCTTC 76498 30 100.0 37 CTTCCTCTTC .............................. GGGCATGACTCTGGGAGAAAGGGGAGCGTGACACCCC 76565 30 100.0 37 GTGACACCCC .............................. GCATATCAGCACTTACGTGAGAGTTCTGAATTAGGCC 76632 30 100.0 41 GAATTAGGCC .............................. GCGTAAAATACGCACGAGCAAGAACCCGCACGACATTTTCA 76703 30 100.0 37 GACATTTTCA .............................. TCATTGAAATAGTCGAAAATTCCGCTGGTATCACACA 76770 30 100.0 37 GTATCACACA .............................. GCTGTAACTGGTGGCTCTTATGTAACTTTCTCAATAT 76837 30 100.0 37 TTCTCAATAT .............................. CCCACTGGTATTTCTATTGCGCCCCGTTTAGGTGGGC 76904 30 100.0 37 TTAGGTGGGC .............................. AAAAAATTTTTGGCATGGCGTCACACTCCCTCCGCTC 76971 30 100.0 37 CCCTCCGCTC .............................. GCAAAATCGTCCAATGTAAGATTATGTTCTTCTCTAA 77038 30 100.0 39 TCTTCTCTAA .............................. GAAAATGACATGATTGAACGGAGTAGAAAGGTAGTCAAC 77107 30 100.0 37 GGTAGTCAAC .............................. TCTGCATGACAAAAGCATAGAGTTGCTTTATGTCTGC 77174 30 100.0 40 TTATGTCTGC .............................. GTGCCTGGAACACTTTTTACCCGTTACTACGGATCATTTA 77244 30 100.0 37 GGATCATTTA .............................. TATAAACAAACAGTAGGGTTGGAACGACCCGAATTTA 77311 30 100.0 38 CCCGAATTTA .............................. TGAGAAAAATAACGATGATTATACTAATAACCCTTTTT 77379 30 100.0 39 AACCCTTTTT .............................. CGCGTATTACGCCCTCCATAAATTTCATAAGTGGCCAAG 77448 30 100.0 36 AGTGGCCAAG .............................. CTGCTGCCCTCATGAGAGGATGGAATGCCATTCTGA 77514 30 100.0 37 GCCATTCTGA .............................. CCGTGCTGGCTCCTTCTGCACCGAGGGTTTCACCGAC 77581 30 100.0 36 TTTCACCGAC .............................. CCAGCAAGCTATTCACCGAACGGGAGCGAGGTTTTG 77647 30 100.0 36 CGAGGTTTTG .............................. CCTCCACTTCGCCCGCAAGTATATCGCCATAGTTTA 77713 30 100.0 36 CCATAGTTTA .............................. TAATGAACCACTGAAAGCGCGAATGCGCCGTAGGTG 77779 30 100.0 37 GCCGTAGGTG .............................. TCTGCATGACAAAAGCATAGAGTTGCTTTATGTCTGC 77846 30 100.0 40 TTATGTCTGC .............................. GTGCCTGGAACACTTTTTACCCGTTACTACGGATCATTTA 77916 30 100.0 36 GGATCATTTA .............................. GCAGAAGCGATGGGCAAAAGCATTGCCGAAGCGAGA 77982 30 100.0 38 CGAAGCGAGA .............................. TGTCGAAAGAATCCAGGGTTTCAAGCCATTTCGGGAAG 78050 30 100.0 37 TTTCGGGAAG .............................. GACAAAATCTCAATTCCAGTATACCACAAAGGAGGAA 78117 30 100.0 AAAGGAGGAA .............................. CCAGGTCGCT ========== ====== ====== ====== ========== ============================== 70 30 37 GTTACTAGCTTACCTATGAGGGGTTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.80,-0.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [81.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [184,105] Score: 0/0.18 # # Final direction: F [0.64,0 Confidence: HIGH] >NC_014389 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 336108 19 100.0 48 NNNNNNNNNN ....C..T........... GCCATGCATTTGGTAATCCTCACGAATCGCACCTAACAAGCAGGTATT 336175 19 100.0 47 NNNNNNNNNN A....A............. ACAAAAAAGAATGCCAGATGTCAAGCACCTACCTAATTACTAGGTAA 336241 19 100.0 42 NNNNNNNNNN ................... AACAACAATTGAAAGGAGAAACGTACACCTAATTACTAGGTA 336302 19 100.0 46 NNNNNNNNNN A.................. GCTTCCGACCAAGAATGGGTCGCCTGGAATACCTAACAAGTAGGTA 336367 19 100.0 48 NNNNNNNNNN ................G.. AGTCCTTGAATGGCTAATCAACTTGCCACAACCTAATTACTAGGTAAT 336434 19 100.0 42 NNNNNNNNNN ............A...... AACAACAATTGAAAGGAGAAACGTACACCTAATTACTAGGTA 336495 19 100.0 46 NNNNNNNNNN A.................. GCTTCCGACCAAGAATGGGTCGCCTGGAATACCTAACAAGTAGGTA 336560 19 100.0 47 NNNNNNNNNN ................... TCATTGCGATCTCATCTCCTTTCTGCGACGACCTAACAAGTAGGTAT 336626 19 100.0 1 NNNNNNNNNN .A................. NNNNNNNNNN ========== ====== ====== ====== ========== =================== 9 19 45 TTTTTTAAGGTTCTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:78.95%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [351,26] Score: 0.18/0.18 # # Final direction: R [0.18,0.41 Confidence: MEDIUM] >NC_014378 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 892812 37 100.0 37 TAGGGACGCA ..................................... TTTATTTTTTTAAATTAATACCATTTTAGTGTTGACA 892886 37 100.0 37 AGTGTTGACA ..................................... TGCTTGAACATCATCTTTAGATCATCTCTTTTCTTAA 892960 37 100.0 36 CTTTTCTTAA ..................................... GGAAGATTTTGGAGATGTCACATTCGAGGAACTGGT 893033 37 100.0 36 AGGAACTGGT ..................................... GCTGCTAATAACTCACTCACATTATTCATCTCCTTC 893106 37 100.0 34 CATCTCCTTC ..................................... GTACTGCTTTCTGCTGTGCAGCTTGGGCTTGTGC 893177 37 100.0 36 GGGCTTGTGC ..................................... CATCATTTGGAGATTCATGTGAATTAATTGTTAAAG 893250 37 100.0 35 ATTGTTAAAG ..................................... AGGATAATATGCTTTCACTCGTTGCTTCGGGAGAG 893322 37 97.3 TTCGGGAGAG ...................................G. TAATATGA ========== ====== ====== ====== ========== ===================================== 8 37 35 CTTTAAAGAACTATAATTTCGTTTAAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.68%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [287,801] Score: 0.18/0.18 # # Final direction: F [5.28,0.45 Confidence: HIGH] >NC_014392 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 145343 29 100.0 38 NNNNNNNNNN ............................. TCTTTTTTCTCTTTAACAAATCTTGATATGCCAACTCT 145410 29 100.0 37 NNNNNNNNNN ............................. AACGACAAGCTAACGTACAGGAAAAACTCCCATGACG 145476 29 100.0 36 NNNNNNNNNN ............................. GTTCAATTCTGATTATATCAGACTTAAAGTCCGTTG 145541 29 100.0 38 NNNNNNNNNN ............................. TCAGTAGAATTTTTAAAAGATTATTTGACTTTAGGTGG 145608 29 100.0 38 NNNNNNNNNN ............................. GACAATAGATTATACGTGCACGTTTCAAACGGCAAAGG 145675 29 100.0 37 NNNNNNNNNN ............................. GTTCTAAGTCATCAATTAACTCATCAATTATTTGTAC 145741 29 100.0 37 NNNNNNNNNN ............................. AGCAGACACACTCTATCAAATTCCCTGCCGTCTGTTC 145807 29 100.0 37 NNNNNNNNNN ............................. GTATATGATTTAGAGAAGAACGATATAAGGTCGTTTA 145873 29 100.0 37 NNNNNNNNNN ............................. TGATATATCAAATACACCTTAAAGCCATCATCATGAC 145939 29 100.0 35 NNNNNNNNNN ............................. AGGGGCGGGGGAAGAAAAAAGAAAAAAAGCTATCG 146003 29 100.0 36 NNNNNNNNNN ............................. TTCTTTTATTTGAATATCTTTACTTTAGTCGCTATA 146068 29 100.0 37 NNNNNNNNNN ............................. ACTCAAACAATTTGAAGAACGATACGAAATATTAAAA 146134 29 100.0 37 NNNNNNNNNN ............................. ATACTATATCATAGCCCAATTTCCTACTCTGACTAAA 146200 29 100.0 37 NNNNNNNNNN ............................. ACATTCGATACAAAGTCATTCTCATCATCAAAAGCAG 146266 29 100.0 37 NNNNNNNNNN ............................. TGCAAGCATTACTATTGCCTCTTCCCTCGTTATAATA 146332 29 100.0 37 NNNNNNNNNN ............................. ACATCACGCATTAAATTATACTGTCGTATAGTAACTT 146398 29 100.0 37 NNNNNNNNNN ............................. GAGGCTATATTATTATTTTTAGAAGCTTCTTTGCTTA 146464 29 100.0 38 NNNNNNNNNN ............................. TTATACACCCTAACACTGCCAATTGTCAATATATTTAA 146531 29 100.0 39 NNNNNNNNNN ............................. TTGAAAGTGCATGTGCGTGTTACATTTTGGTATGGTGAG 146599 29 100.0 37 NNNNNNNNNN ............................. ACGTATAATTTAACTGCTACAAGCGGTAAGGACTATG 146665 29 100.0 38 NNNNNNNNNN ............................. AATTTTCTTTCAAATCATTTATACTCACATCTTTTATA 146732 29 100.0 36 NNNNNNNNNN ............................. AATACTACTAATTTTTCTTGTATACCCATACTCAAA 146797 29 100.0 35 NNNNNNNNNN ............................. AACCATTGTGGCGAATCCTTTTCCATATCTATCTG 146861 29 100.0 38 NNNNNNNNNN ............................. TAAATGTATCGAAACTGTCTAAGCGATCAGGAACTAAA 146928 29 100.0 36 NNNNNNNNNN ............................. TCCCATTACTCCATTCAATTCCTGTTGCATCTTATT 146993 29 100.0 36 NNNNNNNNNN ............................. AAAAAATCTTTTTTAGAAAAGATTTTTCATTTTCTT 147058 29 100.0 36 NNNNNNNNNN ............................. GATACTATTCGAATGCACACCAGAAAACTTATTTTA 147123 29 100.0 37 NNNNNNNNNN ............................. GTGCAATTAAAAACTTTATTTGCGTATTTGAATTATT 147189 29 100.0 37 NNNNNNNNNN ............................. CACACCAAACAGCAGTAAACTCTAACATGTCTTCAAT 147255 29 100.0 37 NNNNNNNNNN ............................. GTGCTTCATCTATTACTAAAAGACAACTACCTTCCTT 147321 29 100.0 37 NNNNNNNNNN ............................. GAGAAGCCTGTTTTTGATTTTAATTTTAAGTTGTTGG 147387 29 100.0 37 NNNNNNNNNN ............................. CTTCAGCTATAGCCTGTGCTATCTTGTCCTGAACATT 147453 29 100.0 36 NNNNNNNNNN ............................. GATTCTCCTTTTCGAACTATAACATTTCCGGTGCAA 147518 29 100.0 37 NNNNNNNNNN ............................. GCTGTTGTAATTGCAAAATATATAGCTCGTTTAGCAG 147584 29 100.0 37 NNNNNNNNNN ............................. ATAGCCAAACATCACCTCGTTGAGTGCAAGGTTGAGG 147650 29 100.0 37 NNNNNNNNNN ............................. CTACAAAATCACCAAAAGCCCACGCATTAATGATGTA 147716 29 100.0 35 NNNNNNNNNN ............................. TTCTTTCTGTGTATGATATCTTTGTAATAAATTTG 147780 29 100.0 36 NNNNNNNNNN ............................. AAAGGCTTGTCGAGGAAGCATTAAAAGAACTTTTTG 147845 29 100.0 37 NNNNNNNNNN ............................. AGGGGTTAGTTTATGCGATAAAAGTTGAAGAGTTTTG 147911 29 100.0 37 NNNNNNNNNN ............................. TATCTCTGCCCCTGAACTATTTAATTTTCTAACATTT 147977 29 100.0 35 NNNNNNNNNN ............................. TTTCTTTACAGTGATTCTTATTTTGCCCTCAACAA 148041 29 100.0 37 NNNNNNNNNN ............................. CATTTTTTGTCTCCTCCAGTTTTCTTAGTGTTGCTTC 148107 29 100.0 38 NNNNNNNNNN ............................. TTGTCAATAGACTTGAAGTTCGAAAAATCGAACTTCAA 148174 29 100.0 37 NNNNNNNNNN ............................. GTTTGGGGCACTCTTCAGGGGCGCCTTGCTTTCCCTG 148240 29 100.0 37 NNNNNNNNNN ............................. CCGGTTGCGGTTTTCTTATTTTTCGCTGGAGGCTTTC 148306 29 100.0 37 NNNNNNNNNN ............................. GTTCTAAGTCATCAATTAACTCATCAATTATTTGTAC 148372 29 100.0 37 NNNNNNNNNN ............................. TCGCTATCTCAGCATCAGTTCGGGCACGGTTGGAGAT 148438 29 100.0 35 NNNNNNNNNN ............................. TTTTTCTATCTTTTCAGCTTTAACAATTTCACAAT 148502 29 100.0 37 NNNNNNNNNN ............................. CACTTACTTTTTGTTTTACAACCTCGTTTATTTGCTC 148568 29 100.0 36 NNNNNNNNNN ............................. GTCGTTTTGCAGCCTGTAAAAAAGTTAGCTGATATG 148633 29 100.0 37 NNNNNNNNNN ............................. GTCTTTATAGCTGGATGAACAACGTCAAAAGCAATTG 148699 29 100.0 38 NNNNNNNNNN ............................. CACAGTAAGAGAAAAGCTAAAAGCTCTAAAAATCAATT 148766 29 100.0 38 NNNNNNNNNN ............................. TCCTATAGGGAGTACAGAACTATAAGAATAAGAACCGC 148833 29 100.0 38 NNNNNNNNNN ............................. TTGTACGTGCGGCTTCCACCGCCTCTGTTTCCATGTCA 148900 29 100.0 37 NNNNNNNNNN ............................. ATTATTATCCTTAAAAATTCTTTGCCAGCCCGCGTTT 148966 29 100.0 38 NNNNNNNNNN ............................. ATTCAGTAACGGTTTGTTCAGGTACTTTAGGTGAAACG 149033 29 100.0 37 NNNNNNNNNN ............................. TATTTACTTGTATTCCTGCTCACATTAGCCAAAACGG 149099 29 100.0 37 NNNNNNNNNN ............................. ACCGCTGCGACCTGCAGCGTAAATTGTGTTTTGAGGC 149165 29 100.0 38 NNNNNNNNNN ............................. AGTGTGGTGCTTTGAAAAAAAGGCAAAAACAAAACTGA 149232 29 100.0 37 NNNNNNNNNN ............................. CTTTCTTTTTTAAAAAATCAATTATTTGAGACAATCC 149298 29 100.0 36 NNNNNNNNNN ............................. TTGATGGTTTTAAAGAACCACCGGGATGGTTATGCG 149363 29 100.0 36 NNNNNNNNNN ............................. AAATTGTGGCGGAAAAAATTTTGAGTTATACTTTCG 149428 29 100.0 37 NNNNNNNNNN ............................. TTCTTCTTTGCTTTTTTTGTCTTTCATTATGAAGCTG 149494 29 100.0 36 NNNNNNNNNN ............................. TTGAAACTATATCGGGTTGTGGGTCTACAGAAAAAT 149559 29 100.0 36 NNNNNNNNNN ............................. ACAGCTCTGGACAACACGGATATGTCGGACGTACCG 149624 29 100.0 36 NNNNNNNNNN ............................. CGTAACGAAAGAGAAGGGGAATATCTTACTAATACA 149689 29 100.0 36 NNNNNNNNNN ............................. ATAGAGCTTTAGAGATAGTTAAAAAGGCTATGGAGA 149754 29 100.0 37 NNNNNNNNNN ............................. TTTGAATATATTTCAAGAAAAGGAATTGTTTGTTGTG 149820 29 100.0 36 NNNNNNNNNN ............................. AATTAGAAGAAATTAATAGAGAATTATCAAATTTAG 149885 29 100.0 37 NNNNNNNNNN ............................. GAACAAAGAAAACTTTATAATGCTATTAGAAAAGAAG 149951 29 100.0 38 NNNNNNNNNN ............................. AATTGTGGAGAGGTTATAGTGTTAGAGGGGGATAGTGC 150018 29 100.0 37 NNNNNNNNNN ............................. ATGTCGAGACTTTTAGACATTGCTATAAATGAATTGT 150084 29 100.0 37 NNNNNNNNNN ............................. AGAATGACTATTTTAGGGTTTGATACGGGTGTTTTAT 150150 29 100.0 37 NNNNNNNNNN ............................. AGTCCTAAAATTTGGAAATGATGGCAGGGGGTTCAGA 150216 29 100.0 33 NNNNNNNNNN ............................. CACAATAGGTTCTCTTTTTATTCCCACAGGTAT 150278 29 100.0 38 NNNNNNNNNN ............................. TTGTAATTTTTTGCTTCATCTTCTTTACCTATTAATCT 150345 29 100.0 37 NNNNNNNNNN ............................. ATTGATGAAAGACGTAAGCGAGAGTGAGGAAGGTTTT 150411 29 100.0 37 NNNNNNNNNN ............................. CTATAATAGGGTTCATCCTGATAGAAACTGGACATAA 150477 29 100.0 37 NNNNNNNNNN ............................. TTATCAAGCATAACGAAAGCATTATCGTCGAGTAAAG 150543 29 100.0 38 NNNNNNNNNN ............................. TCTATTGAATTATTATCATAATTTACTTTAAAAATTTT 150610 29 100.0 38 NNNNNNNNNN ............................. TACTCTTAAATTTAGAAAACACAATACATTTTTCTTCA 150677 29 100.0 37 NNNNNNNNNN ............................. AAAACTTTCTCATATTCAGGCTTAACAACCCATGTAT 150743 29 100.0 37 NNNNNNNNNN ............................. TTGCATGGGAACAAGTACGTAATAATTAAAAGTGGTA 150809 29 100.0 38 NNNNNNNNNN ............................. ACAGCAGAATCATTAGAAGAGTTAGAAAAGCTAATTAA 150876 29 100.0 34 NNNNNNNNNN ............................. TAATTATTTTACTTGGTTATTAGTTTAATCATTA 150939 29 100.0 38 NNNNNNNNNN ............................. TATACACAACCTCCTTTTTGTGTTCAAAAGTATTTACA 151006 29 100.0 36 NNNNNNNNNN ............................. GATTTGAACAAGTTAAAATCTTCGAGGTATGGATAT 151071 29 100.0 37 NNNNNNNNNN ............................. AAAGCATAGTTGTTAAGAACAAAATTTATCAACTCTT 151137 29 100.0 37 NNNNNNNNNN ............................. GTAAGATTCAACTATATTGTTAAAATAATTAGTCTGC 151203 29 100.0 37 NNNNNNNNNN ............................. CTTTATTACTCAAAAAATATTCATAAGCCCTGTTTAA 151269 29 100.0 37 NNNNNNNNNN ............................. CTAATTCCCAATTCCTTTTAAATATATACGAATCTTT 151335 29 100.0 37 NNNNNNNNNN ............................. ATACTTATCTCTTCTAAATGGTATCCGTCATAAATTT 151401 29 100.0 37 NNNNNNNNNN ............................. TAGTAATGCACTGTAACTTTTACCAGAACCTGGTGTA 151467 29 100.0 39 NNNNNNNNNN ............................. ATAATCAAACGGCAAACTAAAAGGAAACTTTCTCGATAT 151535 29 100.0 37 NNNNNNNNNN ............................. ATGAATGAGATAGCTAATTTACTTAATTCTGAAGATG 151601 29 100.0 38 NNNNNNNNNN ............................. TTCGGCAAGTACCCATGAATGGTGAACAGTCCGTTATG 151668 29 100.0 36 NNNNNNNNNN ............................. CATACTAACGTATGCGTTAACACTGATTGCGGCTAA 151733 29 100.0 37 NNNNNNNNNN ............................. AATTTTTTTGCGACGTTAGTAAAGCTTAGTCGTTAGG 151799 29 100.0 39 NNNNNNNNNN ............................. GTTAATAGTGAGTACAGTTGCAGTGCGTTTCCCTGTCTG 151867 29 100.0 37 NNNNNNNNNN ............................. AAGCTTTCTTTTTTTTTTTCTTTTAAGCTCTCTTCCT 151933 29 100.0 39 NNNNNNNNNN ............................. TATCTAAAAACTGAATAAATCTCTCCTCAGATACATTTG 152001 29 100.0 37 NNNNNNNNNN ............................. TTCTCAATCTATCAATTTTATAGTCTATGAAAAATAT 152067 29 100.0 37 NNNNNNNNNN ............................. ACTTTCTTTTGTCTTATCCATAATAAATGAGTTTTTA 152133 29 100.0 38 NNNNNNNNNN ............................. GATAATTTTATAGATTGTTCGTCGAAGAATGTTAAGGA 152200 29 100.0 37 NNNNNNNNNN ............................. GATATTCTCTTCTTTTCGAACTCTGCACATTTGGCTC 152266 29 100.0 37 NNNNNNNNNN ............................. ACATTTAACTTGAGAGATGTTTGTGATGCAGTTATAG 152332 29 100.0 38 NNNNNNNNNN ............................. CGTATTACTTGTAAATATTTTACGCTTGTCATTTTTTC 152399 29 100.0 37 NNNNNNNNNN ............................. GTAGTAAAGGTGAGTATTTTAGGTGATGATGTGAGGG 152465 29 100.0 37 NNNNNNNNNN ............................. ATAGCATAACTAAAAACTTTTCTATCAAAATCTTCAC 152531 29 100.0 37 NNNNNNNNNN ............................. GATAGAGGGTTATTTGAAAGAGACAGCTAAGCATTTT 152597 29 100.0 37 NNNNNNNNNN ............................. ATGGATTGGAACGAGCAGGAGCAGAAATATAACTGGG 152663 29 100.0 38 NNNNNNNNNN ............................. TTTATATCCTATGTAAGTTCGACAGAAGCACTATAGTG 152730 29 100.0 36 NNNNNNNNNN ............................. AGGAACTTTTTCTAAAATAATTACCTTCTGTCCTTT 152795 29 100.0 38 NNNNNNNNNN ............................. AGAAATTATTCTAATGCTGAAGGTAAAATTACAAAAAG 152862 29 100.0 36 NNNNNNNNNN ............................. ATAATTTTAATGATTTTTATGCGAGGGCTGATTTAA 152927 29 100.0 35 NNNNNNNNNN ............................. ATGGATTGGAACGAGCAGGAGCAGAAATATAACTG 152991 29 100.0 38 NNNNNNNNNN ............................. GTGAGGATAAAGGGAGATATGAGCTCAGGTCTAAAAAG 153058 29 100.0 35 NNNNNNNNNN ............................. ATAATTTTAATGATTTTTATGCGAGGGCTGATTTA 153122 29 100.0 38 NNNNNNNNNN ............................. TAACAACAGCTGCCTCTGTATTAGCTACCTCACCAATA 153189 29 100.0 36 NNNNNNNNNN ............................. TCAGCAAGATACCAGATAAGAATTCGATCATTTTCT 153254 29 100.0 36 NNNNNNNNNN ............................. AAGCAGGAAGTTGGGTTATGATGTAGTGCTGATTAC 153319 29 100.0 37 NNNNNNNNNN ............................. AATGTTAGGGGGTTAGTTTTTTATTTTGTAGTAACAG 153385 29 100.0 36 NNNNNNNNNN ............................. ATAGGCTGTATGCATTAGGGTTAATAGATCGGATAA 153450 29 100.0 37 NNNNNNNNNN ............................. ATATACCTGACATTATTAAATTTAACAGTGCTATTAA 153516 29 100.0 36 NNNNNNNNNN ............................. ACGTATAATTTAACTGCTACGAGCGGTAGGGATTAT 153581 29 100.0 36 NNNNNNNNNN ............................. AATTTTATAAGTGGTTTGAGTGATTATGATATAGTA 153646 29 100.0 36 NNNNNNNNNN ............................. GACGGAAGCTATAAATTGTCGATAACAGCTTTAGTA 153711 29 100.0 37 NNNNNNNNNN ............................. TATTATCAGATAAAGTTCCTTTCAGGACCAAATCTTG 153777 29 100.0 36 NNNNNNNNNN ............................. TCAGAATCTCTAAAAATATTCTTTCTAATTATACTG 153842 29 100.0 36 NNNNNNNNNN ............................. CATTATAAACATTATGTTTGCGTAAAGTGTTTTTAA 153907 29 100.0 36 NNNNNNNNNN ............................. ATGATATGTCTGAAATACTTAGTGATAACACTGTGA 153972 29 100.0 37 NNNNNNNNNN ............................. TAGGTTCCGCTTCAAGCATACTCACTAAATGCACTAA 154038 29 100.0 36 NNNNNNNNNN ............................. TTACTTAAAACCTTACCCTCTAATCCTTTAATATAC 154103 29 100.0 36 NNNNNNNNNN ............................. TTCTCTTCACGTATAATGTCTTTTAAGCACAGGTAA 154168 29 100.0 37 NNNNNNNNNN ............................. TCAGAACTATATGCATTAAGCCAGCGTTGCATAGTAG 154234 29 100.0 36 NNNNNNNNNN ............................. AAAGCCGTTTCTGTTGGATAATACGCTGAGTAATAA 154299 29 100.0 37 NNNNNNNNNN ............................. CAAATTTCTCTACATGTAACCTTCACTGTCTACCACC 154365 29 100.0 37 NNNNNNNNNN ............................. GTCAATGGGTTTACTAACCTTAACCAGTTTGAACCTT 154431 29 100.0 37 NNNNNNNNNN ............................. GGTTAACTGTTATGTATAATGGTCCTTTAGGATATTT 154497 29 100.0 37 NNNNNNNNNN ............................. CCTTATAACCATTCTTCTCACGCGGAACAAACACATC 154563 29 100.0 37 NNNNNNNNNN ............................. ACTCTTTAAACAGTGCTTTCATAAGATTTTCGGCATC 154629 29 100.0 36 NNNNNNNNNN ............................. TTGCACAACCTTCAGCCCATCCCATCCTTAAGCTTT 154694 29 100.0 37 NNNNNNNNNN ............................. GCACTTAAGGTTATAGGTATGTTTACTACTGGAATAG 154760 29 100.0 36 NNNNNNNNNN ............................. TTCTCTTCACGTATAATGTCTTTTAAGCACAGGTAA 154825 29 100.0 37 NNNNNNNNNN ............................. TCAGAACTATATGCATTAAGCCAGCGTTGCATAGTAG 154891 29 100.0 36 NNNNNNNNNN ............................. GGATATATTTTAATAAGGGTGATGGATTTAAAGAGA 154956 29 100.0 37 NNNNNNNNNN ............................. ATTCTCCATGCAACCCGCCATTAATTTAATAAATTAA 155022 29 100.0 36 NNNNNNNNNN ............................. AGTTATGTACCGTTGTTCATAGACCAGCCCGAATAG 155087 29 100.0 37 NNNNNNNNNN ............................. ATAAGGGGTAAGAGATATAGATTCGGGAAGTTTAAAA 155153 29 100.0 36 NNNNNNNNNN ............................. AAACGACAACGTATGTGGAGTATACAGGAAATGGTA 155218 29 100.0 36 NNNNNNNNNN ............................. GCGACGCTAAAAGGTTGACAAGGGAATCCTGCACAA 155283 29 100.0 37 NNNNNNNNNN ............................. GAGGCTAAAATCTTTATCTCCATCAGAAATCTGGCCC 155349 29 100.0 37 NNNNNNNNNN ............................. ACATGGCGATAGGTAAGTTCGTGGCTGGTGAGGCTGG 155415 29 100.0 37 NNNNNNNNNN ............................. GCTCTGGAACGGAGCTGGCACTGTGAAGGTGGTTATT 155481 29 100.0 37 NNNNNNNNNN ............................. TTCACCGCCGTAATGGTCACGGTGCCAGCAGCGCCAG 155547 29 100.0 38 NNNNNNNNNN ............................. TTCCAGTTATGCAATCTATATTGCCTAAAGCTCTGATA 155614 29 100.0 37 NNNNNNNNNN ............................. TCTACTATCATCTCTTCTGTTCCTTCAACCACATCAG 155680 29 100.0 37 NNNNNNNNNN ............................. GATTACAGACTTTTGGCACAGATAGAATGGTACGATG 155746 29 100.0 37 NNNNNNNNNN ............................. TGTGGGGATTGGGAAGGTGTTTGTCAAATTGGTTATA 155812 29 100.0 37 NNNNNNNNNN ............................. AAGGGAGAGCTGTTCAGAGACACAGCAAAATTTCTCG 155878 29 100.0 37 NNNNNNNNNN ............................. ATCTCAAGACGCTTTTATAGTCTGTTGCTGTATCTGG 155944 29 100.0 36 NNNNNNNNNN ............................. AATTAGAAGAAATTAATAGAGAATTATCAAATTTAG 156009 29 100.0 37 NNNNNNNNNN ............................. GTTAGAAGACGCAGAAGAATATTAGAACTGTTACAGG 156075 29 100.0 36 NNNNNNNNNN ............................. AGAATAAAGAAAAACAGGGAGAGCTCAGGAGTCTGT 156140 29 100.0 37 NNNNNNNNNN ............................. GAGACAGTTGCAGGAATACTTGTAGGATTGGGTGTTA 156206 29 100.0 36 NNNNNNNNNN ............................. TAGACATAGTGTAAAAGAATTATATCATTCTTTAGA 156271 29 100.0 36 NNNNNNNNNN ............................. CAAGTGTTACTATCATTTTCATTAGCCCCCAATTTA 156336 29 100.0 37 NNNNNNNNNN ............................. TCTATCAATTGTTGGTCTGCTTTTGGAATATTTTTGA 156402 29 100.0 37 NNNNNNNNNN ............................. AGGTTTGCGATAGCAAGAACTTTTGTAACAGAACAAA 156468 29 100.0 38 NNNNNNNNNN ............................. TTAATTCTTGATTTAATTGAGTATAAAAGACGATAACA 156535 29 100.0 38 NNNNNNNNNN ............................. ATGATAAAAGTTTTGGGAATAGATGCTTCATTAACCAA 156602 29 100.0 37 NNNNNNNNNN ............................. AAAAAATAGTCTTTGTAATAAAACTTTCTTAAGTGAA 156668 29 100.0 37 NNNNNNNNNN ............................. TAAGCTTTTAGTTTCTGAAGAGGTGGAATTTTCGTTG 156734 29 100.0 38 NNNNNNNNNN ............................. GCGTGTTCGTGTATAATGTCTCAAAACCTCGTCAATTG 156801 29 100.0 36 NNNNNNNNNN ............................. GAAAAGGACAAAGAAGCTATCAAACGTAAAATAGCA 156866 29 100.0 37 NNNNNNNNNN ............................. ACAAGCGAAAAAAGCACATTCGAGTGTTATGGACTAA 156932 29 100.0 38 NNNNNNNNNN ............................. TTGCTCGCACTGACGATGAGATAGCGGCGGCATATGCA 156999 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 178 29 36 GTTTTATCTGAACTATGAGGGATGTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.52%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [239,15] Score: 0.18/0.18 # # Final direction: F [0.18,0 Confidence: MEDIUM] >NC_014392 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 157041 29 100.0 38 ATGGCTAAAG ............................. TCAAAATTTACAACAGACATTTTCTCTTCTTTCTTCTC 157108 29 100.0 39 CTTTCTTCTC ............................. GCACAAAAACTGTGGACTACACTTTTTAAATCATTAAAG 157176 29 96.6 36 ATCATTAAAG ................A............ GATACTATTCGAATGCACAATAAAAAACTTATTTTA 157241 29 100.0 37 ACTTATTTTA ............................. TTGAGAATAAGGATAATCTAACGAAGGGGTAACACCA 157307 29 100.0 37 GGTAACACCA ............................. TCTCTACAGGAAATAATTTCATTAAATTATTCATAAA 157373 29 100.0 36 TATTCATAAA ............................. GCGTCTGTTATGGTTTATGCAAGGAAGCTTCTTTGT 157438 29 96.6 36 GCTTCTTTGT ...........................G. CAGGGTTTTGCATTTGGAACGACTTGCTCGAAATAG 157503 29 100.0 37 CTCGAAATAG ............................. TTTTCTTTTCATTTGTGGATTATACTTAATTACAAAC 157569 29 100.0 37 AATTACAAAC ............................. ATGACACAAATTCAAATTTTGCAACAAGCAATAAACA 157635 29 100.0 37 GCAATAAACA ............................. TCAAGCACATCGTTGTTTGCTTCTCTGACACTATAAA 157701 29 100.0 38 ACACTATAAA ............................. GAATTCCAATTATCTGGGTTAAATATATTGTTTTTAAA 157768 29 100.0 37 TGTTTTTAAA ............................. AAGAACGTATCTGTCTGTCAATCATTCTGTCAAACTG 157834 29 100.0 38 TGTCAAACTG ............................. GATTCACCTTTTCAGGGTATAGACGCTGGAGTAATAAA 157901 29 100.0 37 GAGTAATAAA ............................. AAATATGCCCGTCTTGGAGAAAAGTCTTTCATTTTTA 157967 29 100.0 TTCATTTTTA ............................. TTTATAGATGTATTTTTCATAGTACAGATATGCAACA ========== ====== ====== ====== ========== ============================= 15 29 37 GTTTTATCTGAACTATGAGGGATGTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.52%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [82,2085] Score: 0.18/0.18 # # Final direction: R [0,0.86 Confidence: HIGH] >NC_014392 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 160079 30 100.0 36 CCTTTGAACA .............................. TCTTCAAAGCTTGCTGAAGTTCTTGAACTCTCTTAT 160145 30 100.0 36 ACTCTCTTAT .............................. CAACTTTAAGTTGCTGTAACAACGCCTGTGCTGACG 160211 30 96.7 TGTGCTGACG .............................A CAAGATTTTAATGATTGATGCTGTTATTCCGGATG ========== ====== ====== ====== ========== ============================== 3 30 36 GTTTTATCTGAACTATGAGGGATGTAAACT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [2085,5776] Score: 0.18/0.18 # # Final direction: F [0.41,0.18 Confidence: MEDIUM] >NC_014392 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2433976 30 100.0 37 TCTTGAACGT .............................. GATTCAAATAAAAATTTGATTTTTTAAAAAAAATCTG 2434043 30 100.0 41 AAAAAATCTG .............................. GGTTTATCTTCAATAACCTTTTCTTGTTTTTGCTTTGTTAA 2434114 30 100.0 36 GCTTTGTTAA .............................. AAAGTTATTAAATGCTTTCCCATTAGCCCCCCACCT 2434180 30 100.0 35 CCCCCCACCT .............................. TTAAACACCTTTCTTATATCATTGTCTATAGCAGA 2434245 30 100.0 36 CTATAGCAGA .............................. GCTTTAACTGTGCAGGTATTATCGCTATTGGTCTGT 2434311 30 100.0 36 ATTGGTCTGT .............................. AATTATAACATACAAGGCGAGGGAGTTTTAGATTTT 2434377 30 100.0 37 TTTAGATTTT .............................. TTTGCATTCAATGTGAATACCATTCAGTCCTACAACG 2434444 30 100.0 35 TCCTACAACG .............................. GGCTTTAGCTGTATATAATACAGGTGGCACATATA 2434509 30 100.0 39 GGCACATATA .............................. AGAAGTTGTTACTACCCGGTGAGATAAGCGCTTTGTATA 2434578 30 100.0 36 GCTTTGTATA .............................. GAATTAAAAAACATTATAAAAGAAGTAGTGTATAAT 2434644 30 100.0 38 AGTGTATAAT .............................. TTAAGTTGTTCCAAAGTTTCTATCCCTTGTTCCTTCCA 2434712 30 100.0 36 GTTCCTTCCA .............................. GGTGCAGGCATGACCTGTACAATGTATACCGCTGCG 2434778 30 100.0 36 TACCGCTGCG .............................. TAGAAAGCGAGACGTTATATGACATCATCATGAAGG 2434844 30 100.0 38 ATCATGAAGG .............................. GTCTATCATTCTGTCTTGCTGTGCTACTAATATAATAT 2434912 30 96.7 38 AATATAATAT ..............C............... ATCAAATAAGAACACACATCAGGTTTGAGAGCACCTTC 2434980 30 93.3 GAGCACCTTC ...........C..C............... GGTAATCCCCAATCGGGATGATACCATGTTCCTTTGTA ========== ====== ====== ====== ========== ============================== 16 30 36 GTTTGTAGCCTTCCATTTGGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.90,-1.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1235,381] Score: 0.18/0.18 # # Final direction: F [5.73,0 Confidence: HIGH] >NC_014392 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2449621 30 100.0 37 CTGGAATTTT .............................. GCTTAAATTGTTCTTGCTCTAAATCTGTTCTTATTGT 2449688 30 100.0 38 TTCTTATTGT .............................. AATACAAACGATGCTACATAAACTTGTAAATTTCGTGG 2449756 30 100.0 36 AATTTCGTGG .............................. TATAGGAGATGTGCATTTAGGGAGTAAATATTTTGA 2449822 30 100.0 36 AATATTTTGA .............................. TATCTCTATTTCTTCCTTCTCTTTCTCATCTTTTAT 2449888 30 100.0 34 CATCTTTTAT .............................. GTTTTTAGATACGGATGATTATAGCAAATTAAAG 2449952 30 100.0 36 CAAATTAAAG .............................. TCGTTTTCGTAAACGACTTTAGCTTGAATATCAAGC 2450018 30 100.0 36 AATATCAAGC .............................. ATGCCAAGCTTCACAATATCCTTTGCAGCTCTGCAG 2450084 30 100.0 36 AGCTCTGCAG .............................. GCTAATGTCCTTACACCGATATGCAGCCTTTCAGCT 2450150 30 100.0 36 CCTTTCAGCT .............................. AGCGAAACTTCAAAGAAGTTCGCAAGTTTGATTTTA 2450216 30 100.0 36 TTTGATTTTA .............................. TCGTTTTCGTAAACGACTTTAGCTTGAATATCAAGC 2450282 30 100.0 35 AATATCAAGC .............................. TTTAGTCCTACCATGATAACAATAAGCAGCATATA 2450347 30 100.0 38 GCAGCATATA .............................. CCGATAAGCAATAAACACACGGTCTTGGCTAAAGCATT 2450415 30 100.0 37 CTAAAGCATT .............................. AGCTTTGCTGTGATGATTGCAGTTTGAGAAAAGTCAA 2450482 30 100.0 38 GAAAAGTCAA .............................. AAGCTGTTGTTCGTGAAATAAATCTCATTGCTAAACAG 2450550 30 100.0 TGCTAAACAG .............................. AATTCACCTT ========== ====== ====== ====== ========== ============================== 15 30 36 GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [5,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-7.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [61.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [971,220] Score: 0.18/0.18 # # Final direction: F [4.95,0.74 Confidence: HIGH] >NC_014410 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2643518 30 100.0 37 NNNNNNNNNN .............................. CTTTATAAAAATCATGTGCATCTGAACCTATTAATTT 2643585 30 100.0 37 NNNNNNNNNN .............................. AGGTTAAGAAGAGGTATCCAAAGGTAACATTTTATCG 2643652 30 100.0 35 NNNNNNNNNN .............................. TTACTTTGCCTACAAATGTAAACATTCTGTATGGA 2643717 30 100.0 37 NNNNNNNNNN .............................. CTTATACTATACCAAAACTGAGTACAAGTAAAAACAG 2643784 30 100.0 38 NNNNNNNNNN .............................. ATTATTGATAGTGATATTGTAGGTGACGAAATATGTTT 2643852 30 100.0 36 NNNNNNNNNN .............................. CAGACAAAGTTTGTACATTAGTATCAACCAAACTAG 2643918 30 100.0 36 NNNNNNNNNN .............................. CAAGGACGTAGTTATCTGATCACACAATAAAGGAAG 2643984 30 100.0 37 NNNNNNNNNN .............................. TGAGTGTATATAACAAAATAGGGAAAAATTCAAGTTA 2644051 30 100.0 36 NNNNNNNNNN .............................. TTCATACTACCAAAAGAAACAATGCAGGGAAATTGG 2644117 30 100.0 36 NNNNNNNNNN .............................. TTTTAGCATATCTACTCTTAACTTCATCATATCCCA 2644183 30 100.0 36 NNNNNNNNNN .............................. TTTTGCTCCCTGATTTTTTCCAGCCCTTCAATGTTT 2644249 30 100.0 37 NNNNNNNNNN .............................. CAAGGTCTAACACAGCAACAATTATCACAATTAGGAG 2644316 30 100.0 38 NNNNNNNNNN .............................. AACGGATCGTCAATACTGTCTACAGGCTCAAAGTCTGG 2644384 30 100.0 35 NNNNNNNNNN .............................. GGGAATCAGTAGAAGTATAAGAAACAAGATTACCT 2644449 30 100.0 36 NNNNNNNNNN .............................. ATATTTGCTACAAGAAAACTTCTTGGGGGTGCAGAA 2644515 30 100.0 36 NNNNNNNNNN .............................. GGTTATGCATAAGTCTCTTAAAAAATATTTTTGGCT 2644581 30 100.0 37 NNNNNNNNNN .............................. TAAAAGAGTAGTGAGAATTTATTAGGAGGTAATTTTA 2644648 30 100.0 36 NNNNNNNNNN .............................. AACCTACTAACGAGCCATCATTTTTTGGTGCAGTAT 2644714 30 100.0 37 NNNNNNNNNN .............................. TAGAAGAAAACATAAAAGAAAAATTTAATAAATTCTA 2644781 30 100.0 35 NNNNNNNNNN .............................. AGGAAATTTATCACCAATATTAATATTGTTATGAA 2644846 30 100.0 36 NNNNNNNNNN .............................. GGGATTTGAATATGAATTTACGTGCACCTTTTTGCT 2644912 30 100.0 36 NNNNNNNNNN .............................. AAAGAAAGGTTTTAATTATACAAGGAGGAATAAGTA 2644978 30 100.0 37 NNNNNNNNNN .............................. TTCAAAAAGTTTTAAAATACACTTGGACGAATAAAAT 2645045 30 100.0 37 NNNNNNNNNN .............................. CTTTTTCACGAAATGGTACATTCAACAGGACATGAAA 2645112 30 100.0 38 NNNNNNNNNN .............................. TTTGATTTTATTTTTAATTATAAAGCAAAAAAGTACGT 2645180 30 100.0 37 NNNNNNNNNN .............................. CTCTCTATTGTATTACAAAGAATATTATACAAATCAT 2645247 30 100.0 38 NNNNNNNNNN .............................. ATTGGTCTAAAGTGTTTGGATCTGGTACAAGATTAGGG 2645315 30 100.0 36 NNNNNNNNNN .............................. TAAAAAAAGAAGGTGTACCGGTTAAGCTTGTAAGAG 2645381 30 100.0 38 NNNNNNNNNN .............................. TTGTGCAAGAGCAAACATTCTTTTTGCTTGTTTTTGTG 2645449 30 100.0 38 NNNNNNNNNN .............................. GGGGGATATAGAGGGGAAGCCAGCCAGCTTCACGCCAA 2645517 30 100.0 38 NNNNNNNNNN .............................. TAGACATTGAACTTGTGAAAAAGTATGAGGGAATGGAA 2645585 30 100.0 36 NNNNNNNNNN .............................. TTTGGATCCAGATAGAACGATACTTGGCACATATGG 2645651 30 100.0 39 NNNNNNNNNN .............................. ACCAAACCCAAAAACCTGGCTGAACGAGGGAAGATGGGA 2645720 30 100.0 37 NNNNNNNNNN .............................. TCTTGTATGTTTCGACAATTCCCTCTTCGACGTATGT 2645787 30 100.0 38 NNNNNNNNNN .............................. TTAATTGTCTGGGCTTTCTCTTTTTAGGAGGGATAGAA 2645855 30 100.0 36 NNNNNNNNNN .............................. AGTTAATCCCACCAATTCTTTATATATTTTTTTAAA 2645921 30 100.0 37 NNNNNNNNNN .............................. TCCTTGCAGTTTTGACAGCATCCTGCCCAGATACAAC 2645988 30 100.0 37 NNNNNNNNNN .............................. ATAATCAGATTTTAAGTTATAAAAATATAACAGATAA 2646055 30 100.0 37 NNNNNNNNNN .............................. TATCGCAAAAATATAATATTCCTTTAATCACTGGAAC 2646122 30 100.0 36 NNNNNNNNNN .............................. AGGTTTTTGGGTCGGATTAAGATTACAACCTTTAAT 2646188 30 100.0 39 NNNNNNNNNN .............................. GAGCGACACAAGATGTTGTTGTGGAATTGATACAATAAA 2646257 30 100.0 39 NNNNNNNNNN .............................. AAGAAAAAGCCGAAGAAATTGTAAAACCATTTATACAGG 2646326 30 100.0 36 NNNNNNNNNN .............................. ATGTCTGGACTGGAGTTCCGGATGCAGACGATATCG 2646392 30 100.0 37 NNNNNNNNNN .............................. GTAAAAGGCAAAGAGTGGGAAGAGCAAAGCATCGGTG 2646459 30 100.0 36 NNNNNNNNNN .............................. AAAATTATATGTTATTGGATTATCAGATGGTATAAT 2646525 30 100.0 37 NNNNNNNNNN .............................. AAAACATTGAATTAAGGATACAAGGCGACATAATAAG 2646592 30 100.0 36 NNNNNNNNNN .............................. GCCTTTCTTTAATTCCTAATTCCTTTGCTGTATCTC 2646658 30 100.0 36 NNNNNNNNNN .............................. ACTGACAGCTGCCCTGATTTCATGGCGTTAATGTTA 2646724 30 100.0 37 NNNNNNNNNN .............................. CTATGGCGGGTAACACAAAACCAAAAATAAATATTAA 2646791 30 100.0 37 NNNNNNNNNN .............................. TATCAGGGACAAGCACAGCACCTGCATACCAAGCAAA 2646858 30 100.0 36 NNNNNNNNNN .............................. GTTTCGCTGCGTGTGTTGGTTACATCACATGTAAAA 2646924 30 100.0 36 NNNNNNNNNN .............................. CCACAGGCGGGATATTTACAAAGCCACATATAGCAA 2646990 30 100.0 36 NNNNNNNNNN .............................. GCGCAAGACCAGGCACAGGCAAGACGGCATTCGCAT 2647056 30 100.0 37 NNNNNNNNNN .............................. GCAGGATATTATATAAAATTTAACGCTGATGTAATTT 2647123 30 100.0 37 NNNNNNNNNN .............................. TTAAGTTTTCAGAGTGCATTTTTTCTGTAAAATGAAT 2647190 30 100.0 35 NNNNNNNNNN .............................. TTCCTCCAGTTTCTAAATACCACTGTGCCAAAATG 2647255 30 100.0 36 NNNNNNNNNN .............................. ACGTATGCGCCTGCTGGAAGTGACATTCCATACTGT 2647321 30 100.0 36 NNNNNNNNNN .............................. AAATTTGCTAATAATGCTAAAATATAATTAAATAAA 2647387 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 59 30 36 GTTTCAATTCCTGATAGGTAGGCTAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-2.40,-1.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [73.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [395,170] Score: 0.18/0.18 # # Final direction: R [0.55,5.27 Confidence: HIGH] >NC_014392 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2460383 30 100.0 35 TCTTGAACGT .............................. GATCGCCTTCACACACTGTAAACGAGATTATACCC 2460448 30 100.0 36 GATTATACCC .............................. GGTCAACGATCAGTATTTTATTTCTATTCTTGACCC 2460514 30 100.0 35 TTCTTGACCC .............................. TCACAGACTACATAGGTAGCAAATATTATTCAAGC 2460579 30 100.0 37 TTATTCAAGC .............................. GAATCATAATTAGCAAAATCATCAAGTTCATTATTAT 2460646 30 100.0 35 TCATTATTAT .............................. ACATACTGGTTAGATCCTCCAGCAAGTCCTAACAT 2460711 30 100.0 36 GTCCTAACAT .............................. ATACTTAATTTTAAGCAAAATACTAACAAAATCATC 2460777 30 100.0 38 CAAAATCATC .............................. GCCTGCATATAAGAACCATGATGAACAACTGATACAAC 2460845 30 100.0 35 CTGATACAAC .............................. TGTCATCAGGTTGTTTATATTCTACTTCTTTTACA 2460910 30 100.0 37 TTCTTTTACA .............................. GGGTACAGGAGATTATTGGCATGTGCTAAGTTAGGAA 2460977 30 100.0 36 AAGTTAGGAA .............................. TGTCAATAATCTCTTTAGCCCTGATTAATTTGGTAT 2461043 30 100.0 36 AATTTGGTAT .............................. CTATTATTTGATATATATCCAAAATCCTTTAAAGTA 2461109 30 100.0 36 CTTTAAAGTA .............................. TCCTCAAAATTAAATCTTCTTGAATTATTCCTAGTA 2461175 30 100.0 38 ATTCCTAGTA .............................. ACCTCTTTCTCTACTTTTTTTACCCTTAACATCTTATA 2461243 30 100.0 36 ACATCTTATA .............................. TCCTCAAAATTAAATCTTCTTGAATTATTCCTAGTA 2461309 30 100.0 36 ATTCCTAGTA .............................. TTGTATAAACCATAAAAACTTTTGTCTCGTTATAAT 2461375 30 100.0 37 TCGTTATAAT .............................. CCTCTAATCGTCGAAACTTCTCTTACTTCAAAATATC 2461442 30 100.0 38 TCAAAATATC .............................. TCATTACCCGAAGATAAACCATCATTACCATCAACATA 2461510 30 100.0 36 CATCAACATA .............................. CCAACTGTTTTTACTCTTTCTCGCCCTTCATGATAG 2461576 30 100.0 36 TTCATGATAG .............................. CTTATTTTTGTTGTGTCACCGTTAACTAAGTATCGT 2461642 30 96.7 37 TAAGTATCGT ........T..................... ACTCATACTGGCATTCTTCGTAACGCTTTAAAATTTC 2461709 30 100.0 TTAAAATTTC .............................. CCTATGTTAT ========== ====== ====== ====== ========== ============================== 21 30 36 GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [5,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-7.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [612,238] Score: 0.18/0.18 # # Final direction: F [5.36,0.74 Confidence: HIGH] >NC_014392 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2464720 30 100.0 39 TTTCCAACGT .............................. TTCATTAATTCTTCTAAATTTCTAATAGTTCTTGCAATT 2464789 30 100.0 37 TCTTGCAATT .............................. GCTTGACTCATTGAAATTTTTGAAAGCCAATCAAAGT 2464856 30 100.0 38 CAATCAAAGT .............................. ACTTCTTCCTGTGTCATAACTGCAATTTCATCTTTATG 2464924 30 100.0 36 CATCTTTATG .............................. ATTTTATAATACTTGACCCTGCAAAACTTGTTATAC 2464990 30 100.0 38 CTTGTTATAC .............................. TTATCTATACCTAATAAACCTGCAAAATCTTTTAATCT 2465058 30 100.0 38 CTTTTAATCT .............................. CTTCACTAAAGCAATATTTCTACCATTTGAATCTTTCC 2465126 30 100.0 37 GAATCTTTCC .............................. CTGATTTTTTTGCCATCAAGCAACTCAGTACCTGCTT 2465193 30 100.0 37 GTACCTGCTT .............................. CTGATTTTTTTGCCATCAAGCAACTCAGTACCTGCTT 2465260 30 100.0 36 GTACCTGCTT .............................. AGGTTAAATAAATGGGGCGGCTAAAGCCGCCCCAAA 2465326 30 100.0 36 CCGCCCCAAA .............................. ATATTCTGAGCTAATGCTTCTAACAGTTCACTGTTA 2465392 30 100.0 37 TTCACTGTTA .............................. ACTGTAGCATCTTCAACATCTTTTTGCAACTGATCTA 2465459 30 100.0 36 AACTGATCTA .............................. GGCTCTAAACTGTTATACATATCAATTATTTCTTGT 2465525 30 100.0 36 TATTTCTTGT .............................. GCCATACTTGTATCAACACTATATTTATACAACAAA 2465591 30 100.0 36 ATACAACAAA .............................. ATTACCTTCAAAAAATTTTTTTACAACTTCTTTATT 2465657 30 100.0 36 CTTCTTTATT .............................. TTAGACCAACTATCTCCAACCCCGCCACCATTGTAC 2465723 30 100.0 36 ACCATTGTAC .............................. AAGGGCTGGTTGAATTTTTTGCTTGATGTTAAAGCA 2465789 30 96.7 36 TGTTAAAGCA .......A...................... TCAATATTGACTACATCTGTCATTTCAGGTTTTTTA 2465855 30 100.0 36 AGGTTTTTTA .............................. CCGTTGAAGAAAGCCAAGCCGTCGGCTTTGGTGAGG 2465921 30 100.0 36 TTTGGTGAGG .............................. CGCTAACAATTGTTCAAAAACAGTTCGTGGAAAAGT 2465987 30 100.0 38 GTGGAAAAGT .............................. GCTTGTCAGTTCCACATTCTTTTTTAGCTGTTTCAAAG 2466055 30 100.0 35 TGTTTCAAAG .............................. TTGTTTGAAATCAATAAATTCGCATTGCCTTGATA 2466120 30 100.0 36 TGCCTTGATA .............................. GCCTGTTTCTGTGAAATACCTGCCTTTTCAGAAATT 2466186 30 100.0 35 TTCAGAAATT .............................. ATTAAATATTTTTATAAAAAGGGTGGGCACAAAGA 2466251 30 100.0 36 GGCACAAAGA .............................. AATAATATAACGTTTTAATCTCCTCTGTATTTAACA 2466317 30 100.0 36 GTATTTAACA .............................. GTATAAATTAATATATCATCAAATCCTATATACCTG 2466383 30 100.0 39 TATATACCTG .............................. CCATCACCATTAATATCAAATGCTAACCCTGTTGCATTA 2466452 30 100.0 38 TGTTGCATTA .............................. AATTTAACTCTCTCTTTAAACCTTCCATAAATTTCTCG 2466520 30 100.0 36 AAATTTCTCG .............................. CCATAAGGGATCCTAAAGTTGTGAATATAAGACCTC 2466586 30 100.0 ATAAGACCTC .............................. TATATCTCATACCCAAGCGTCCTCTTTATCGCCT ========== ====== ====== ====== ========== ============================== 29 30 36 GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [5,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-7.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [531,441] Score: 0/0.18 # # Final direction: F [4.77,0.74 Confidence: HIGH] >NC_014392 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2477566 30 100.0 35 TTTCCAACGT .............................. CTATACTGAATATAACACCTACAAGCCTATCTACT 2477631 30 100.0 38 CCTATCTACT .............................. TGAGGGATATATTTTGAGTGATGGGACTTTAGATGTTG 2477699 30 100.0 38 TTAGATGTTG .............................. TTCTCTACCTTAAGAACTTCTTCTAACACACTCCACAA 2477767 30 100.0 36 CACTCCACAA .............................. TTTAATGTAAACATAACTTATACAGGTCGATTAGAT 2477833 30 100.0 36 TCGATTAGAT .............................. ACAATATTTTTATCAATACCTAAAAACACCTGTAAG 2477899 30 100.0 36 CACCTGTAAG .............................. ATATGACAATTTGAACATCTAAAAGTTCCCATCCAG 2477965 30 100.0 38 TCCCATCCAG .............................. AAAAATGAAAATAGGGCGGAATTTTTACCGCCCGCCCC 2478033 30 100.0 36 CGCCCGCCCC .............................. AGAAGGTGTAGATATTTTTTCAGAGAAATCAAAAAA 2478099 30 100.0 36 AATCAAAAAA .............................. ATTAAACCTGTAAATACTCTTTGTAAAACATTTCCA 2478165 30 100.0 35 AACATTTCCA .............................. TAACTTTGTGAAGTAGTTAAATAAACTTCTCCCTT 2478230 30 100.0 36 CTTCTCCCTT .............................. ACTTAAAATCTGCTGATATAATTGCATAATCTGTTC 2478296 30 100.0 38 TAATCTGTTC .............................. TCTTTTATAGCTTGCTCTAATTTCCCTATATCTTCTTT 2478364 30 100.0 36 TATCTTCTTT .............................. TTTTTAAAATTAAAAATCAACCCCTTTCAAAAATTT 2478430 30 100.0 35 TCAAAAATTT .............................. TGGTTATGAGCCAAATGTGCAGAGTTCGAAAAGAA 2478495 30 100.0 34 TCGAAAAGAA .............................. TACAGAAGGTGGTTTTTGTTAAAATTGATTGTCG 2478559 30 100.0 37 TTGATTGTCG .............................. ATTAACTCTTTAGTACTTACAAATTCACCATTAACAG 2478626 30 100.0 38 CCATTAACAG .............................. AACTGTGTACATATAACTCCCTCTTTTCATTCTTCTAA 2478694 30 100.0 38 ATTCTTCTAA .............................. GTGTCTCTTATAGAACATTTCTTTGGTATTAAAATATT 2478762 30 100.0 TTAAAATATT .............................. TAAACATACCT ========== ====== ====== ====== ========== ============================== 19 30 36 GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [5,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-7.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [704,142] Score: 0.18/0.18 # # Final direction: F [4.95,0.74 Confidence: HIGH] >NC_014392 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2486476 30 96.7 36 TCTTGAACGT ..C........................... TAGTACCATCCACCATACAAATCATAATCATAGTCA 2486542 30 100.0 36 ATCATAGTCA .............................. TAGTACCATCCACCATACAAATCATAATCATAGTCA 2486608 30 100.0 38 ATCATAGTCA .............................. CCTCCTACTCATTTTTTTAACCAGCCCGATTAGGGCTG 2486676 30 100.0 38 ATTAGGGCTG .............................. AATATTTTTTTGTTGCTGACACTGTCCCATACTTCTGT 2486744 30 100.0 36 ATACTTCTGT .............................. TGCACAGATATACCAGATTCCAAACTGGAATGCGGT 2486810 30 100.0 GGAATGCGGT .............................. AAAGAAAAAT ========== ====== ====== ====== ========== ============================== 6 30 36 GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [5,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-7.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [882,209] Score: 0.18/0.18 # # Final direction: F [4.95,1.15 Confidence: MEDIUM] >NC_014393 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 2748102 19 100.0 46 NNNNNNNNNN ................... TAATATTAACGCTATTTTCTGTGATAGTAACTAAACTTAATGCGTA 2748167 19 100.0 46 NNNNNNNNNN ................... CTATATTAACTAGCATGGTAAAGTTTTCAGTCCTCTTTTCTTCACT 2748232 19 100.0 46 NNNNNNNNNN ................... CAATATTAACTTTTTGTGCTCTATCTTCTGCCTGCGAATGAACTGC 2748297 19 100.0 46 NNNNNNNNNN .....G............. CAATATTAACATATCGATATAACTTGACTACTGTTAAAAATCCAAT 2748362 19 100.0 45 NNNNNNNNNN ...A........T.A.... TAATATTAATTATAACCTCTGTATAAGTATATACATCATATTCAT 2748426 19 100.0 46 NNNNNNNNNN ................... CAATATTAACATATATGATCTGCTCCATACTCTCTAGTAGTAGCTG 2748491 19 100.0 46 NNNNNNNNNN T...........TG..... CAATATTAACTTCCAATCTTGGCGCATCTTCATACACACTAAAATT 2748556 19 100.0 46 NNNNNNNNNN ................... CAATATTAACCATATTTGCATTTGGCTTTGTTCTTGGGGCAGTCAC 2748621 19 100.0 47 NNNNNNNNNN A.................C CAATGTTAGCCTGTAGTAAAATGTACTACTGACATACTTACAACTAC 2748687 19 100.0 47 NNNNNNNNNN ............T...... AAATATTAACAGTTTCAAAATAAGGTTAATCACAGAAAAACACTGTG 2748753 19 100.0 47 NNNNNNNNNN ............T.T.... CAATATTATCGTATAATGTTTACATTGGGATGGAGAAATGATGATCA 2748819 19 100.0 45 NNNNNNNNNN ................... CAATACTAACATTCATGCAATTAATGAAACCGAGGATATTGTCAT 2748883 19 100.0 45 NNNNNNNNNN ................... GAATATTAACGAGTTATACGATCAATCGATAAATGGATTGTCATT 2748947 19 100.0 46 NNNNNNNNNN ................... GAATATTAACTGAATTTATACGTCAACTTCGTCAACATCGTCATGA 2749012 19 100.0 48 NNNNNNNNNN ................... TAATATTAACGCATTAGGACACAGCGTAGAAATGACAATGAATGTCTA 2749079 19 100.0 47 NNNNNNNNNN ...........G....... CAATATTAACTAAGCCAATACGATGATTGTTGTGGTGATGCTCCTTA 2749145 19 100.0 47 NNNNNNNNNN ............T...... CAATATTAACCCGATTCACTAGGCGTAACTATAGATGACATTATAAA 2749211 19 100.0 47 NNNNNNNNNN ................... CAATATTAACCAACAAAGCTAATTAAATCTACTTCAAATTCTATATT 2749277 19 100.0 47 NNNNNNNNNN ................... CAATATTAACCTGCATGGGATGGTACAAGTGATATAACAGCTACTAC 2749343 19 100.0 47 NNNNNNNNNN ................... CAATATTAACAAATCAAAGAGCATAAAGACAATATTGTTTTCTTAGA 2749409 19 100.0 46 NNNNNNNNNN ................... CAATATTAACAGTGACAAAGGTAAAAAATATAATTTTATTTTTAAT 2749474 19 100.0 47 NNNNNNNNNN ...............C... CAATATTAACTTACATACTTCAGAATTTATCCTTCTAACTAAATCAC 2749540 19 100.0 46 NNNNNNNNNN ................... CAATATTAACTAAAAAGAAGGAGTAGGGAATGAAAGATTTTGCTTT 2749605 19 100.0 46 NNNNNNNNNN ................... CAATATTAACGTGATAAAGCAGCCACATGTTCCTATCTTTATCACT 2749670 19 100.0 46 NNNNNNNNNN ................... CAATATTAACGCCAATTTTAACAACTCTTCTGCCTTTTTCAGTTTT 2749735 19 100.0 47 NNNNNNNNNN ................... CAATATTAACTTGATAGAAAAGTTGATTTTCGTACTTTGGCTGTTAC 2749801 19 100.0 48 NNNNNNNNNN ................... CAATATTAACGTTTTCCGTAGATACAATAAACAGTTATTCGCTAGTTG 2749868 19 100.0 47 NNNNNNNNNN ................... CAATATTAACTCAGAATCGTCTTGATAATCATCTAAGACTATAAGGT 2749934 19 100.0 47 NNNNNNNNNN ................... CAATATTAACATAGTATCGCGTCCGCTACTTCGATCTGATAATCAAA 2750000 19 100.0 47 NNNNNNNNNN ................... CAATATTAACCATCTAACTCATCTAAAGGTATATCCTTAACTTGTAG 2750066 19 100.0 47 NNNNNNNNNN ................... CAATATTAACATATACCAAATGAAAACCGTGGGCATACAACTATCTT 2750132 19 100.0 47 NNNNNNNNNN ................... CAATATTAACAGACCTTTTATTAGTTCTAATAATATTATTATTTCAT 2750198 19 100.0 47 NNNNNNNNNN ................... CAATATTAACAGATCATAAGTGAAAGACCGTCCGCCATAGCGTTATT 2750264 19 100.0 46 NNNNNNNNNN ................... CAATATTAACAAGAGATTTGGCTAATAAGAAAGCTGTAGCAATTTT 2750329 19 100.0 46 NNNNNNNNNN ................... CAATATTAACAGATAACCTTGGTACTCACACGTTGCGTAAAACGTT 2750394 19 100.0 47 NNNNNNNNNN ................... CAATATTAACGATTAAAAGCTTTAACAACTGAACCATTGTTTAGTAT 2750460 19 100.0 45 NNNNNNNNNN ................... CAATATTAACACTACCAGTGGGACGATGCCAGGAGGAATTGCTTC 2750524 19 100.0 47 NNNNNNNNNN ................... CAATATTAACCTGAACTTATGTATAGCTCTTTTGCTTTATCTCTATT 2750590 19 100.0 45 NNNNNNNNNN ................... CAATATTAACCCAGTAATAACTGCTGCAGTCCCTAGTCCAATTAA 2750654 19 100.0 47 NNNNNNNNNN ................... CAATATTAACATGGTGTTTTTACACCTAATGCAACAATATGTTCTTT 2750720 19 100.0 1 NNNNNNNNNN ................... NNNNNNNNNN ========== ====== ====== ====== ========== =================== 41 19 46 CTTTAAATAATACAGTATT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:84.21%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [80.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [359,203] Score: 0/0.18 # # Final direction: R [0.27,0.41 Confidence: LOW] >NC_014393 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2748556 29 100.0 36 CACTAAAATT ............................. CATATTTGCATTTGGCTTTGTTCTTGGGGCAGTCAC 2748621 29 86.2 37 GGGCAGTCAC A.................C....G...G. CTGTAGTAAAATGTACTACTGACATACTTACAACTAC 2748687 29 93.1 37 TTACAACTAC ............T......A......... AGTTTCAAAATAAGGTTAATCACAGAAAAACACTGTG 2748753 29 89.7 37 AAACACTGTG ............T.T............T. GTATAATGTTTACATTGGGATGGAGAAATGATGATCA 2748819 29 96.6 35 ATGATGATCA ........................C.... ATTCATGCAATTAATGAAACCGAGGATATTGTCAT 2748883 29 96.6 35 ATATTGTCAT ...................G......... GAGTTATACGATCAATCGATAAATGGATTGTCATT 2748947 29 96.6 36 GATTGTCATT ...................G......... TGAATTTATACGTCAACTTCGTCAACATCGTCATGA 2749012 29 96.6 38 ATCGTCATGA ...................T......... GCATTAGGACACAGCGTAGAAATGACAATGAATGTCTA 2749079 29 96.6 37 TGAATGTCTA ...........G................. TAAGCCAATACGATGATTGTTGTGGTGATGCTCCTTA 2749145 29 96.6 37 ATGCTCCTTA ............T................ CCGATTCACTAGGCGTAACTATAGATGACATTATAAA 2749211 29 100.0 37 ACATTATAAA ............................. CAACAAAGCTAATTAAATCTACTTCAAATTCTATATT 2749277 29 100.0 37 ATTCTATATT ............................. CTGCATGGGATGGTACAAGTGATATAACAGCTACTAC 2749343 29 100.0 37 CAGCTACTAC ............................. AAATCAAAGAGCATAAAGACAATATTGTTTTCTTAGA 2749409 29 100.0 36 TTTTCTTAGA ............................. AGTGACAAAGGTAAAAAATATAATTTTATTTTTAAT 2749474 29 96.6 37 TATTTTTAAT ...............C............. TTACATACTTCAGAATTTATCCTTCTAACTAAATCAC 2749540 29 100.0 36 ACTAAATCAC ............................. TAAAAAGAAGGAGTAGGGAATGAAAGATTTTGCTTT 2749605 29 100.0 36 ATTTTGCTTT ............................. GTGATAAAGCAGCCACATGTTCCTATCTTTATCACT 2749670 29 100.0 36 CTTTATCACT ............................. GCCAATTTTAACAACTCTTCTGCCTTTTTCAGTTTT 2749735 29 100.0 37 TTTCAGTTTT ............................. TTGATAGAAAAGTTGATTTTCGTACTTTGGCTGTTAC 2749801 29 100.0 38 TGGCTGTTAC ............................. GTTTTCCGTAGATACAATAAACAGTTATTCGCTAGTTG 2749868 29 100.0 37 TCGCTAGTTG ............................. TCAGAATCGTCTTGATAATCATCTAAGACTATAAGGT 2749934 29 100.0 37 ACTATAAGGT ............................. ATAGTATCGCGTCCGCTACTTCGATCTGATAATCAAA 2750000 29 100.0 37 GATAATCAAA ............................. CATCTAACTCATCTAAAGGTATATCCTTAACTTGTAG 2750066 29 100.0 37 TAACTTGTAG ............................. ATATACCAAATGAAAACCGTGGGCATACAACTATCTT 2750132 29 100.0 37 CAACTATCTT ............................. AGACCTTTTATTAGTTCTAATAATATTATTATTTCAT 2750198 29 100.0 37 ATTATTTCAT ............................. AGATCATAAGTGAAAGACCGTCCGCCATAGCGTTATT 2750264 29 100.0 36 TAGCGTTATT ............................. AAGAGATTTGGCTAATAAGAAAGCTGTAGCAATTTT 2750329 29 100.0 36 TAGCAATTTT ............................. AGATAACCTTGGTACTCACACGTTGCGTAAAACGTT 2750394 29 100.0 37 GTAAAACGTT ............................. GATTAAAAGCTTTAACAACTGAACCATTGTTTAGTAT 2750460 29 100.0 35 TGTTTAGTAT ............................. ACTACCAGTGGGACGATGCCAGGAGGAATTGCTTC 2750524 29 100.0 37 GAATTGCTTC ............................. CTGAACTTATGTATAGCTCTTTTGCTTTATCTCTATT 2750590 29 100.0 35 TATCTCTATT ............................. CCAGTAATAACTGCTGCAGTCCCTAGTCCAATTAA 2750654 29 100.0 37 GTCCAATTAA ............................. ATGGTGTTTTTACACCTAATGCAACAATATGTTCTTT 2750720 29 100.0 TATGTTCTTT ............................. CCTAAAGCTC ========== ====== ====== ====== ========== ============================= 34 29 36 CTTTAAATAATACAGTATTCAATATTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:82.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [71.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [101,193] Score: 0/0.18 # # Final direction: R [0.27,0.41 Confidence: LOW] >NC_014408 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 224060 30 100.0 36 AATCCGCCCT .............................. GAAGAAAACGTTGAGGCTCCTGGAGCTGCTGACGCG 224126 30 100.0 36 TGCTGACGCG .............................. TCACAGAGTTCACACCACAAAACGAGAAAGTCAGAA 224192 30 100.0 38 AAAGTCAGAA .............................. CACTCTCAACTGCGGATGCGGAGTCACCTATCAAATGA 224260 30 100.0 36 TATCAAATGA .............................. TTTTTGGGGGTGGGGGTGGTGTCCCCCCTAGATTAG 224326 30 100.0 36 CCTAGATTAG .............................. GAATGATTCATTCGTCCGGTAGAAGTAGATGAAAGC 224392 30 100.0 37 AGATGAAAGC .............................. GGTTTCATGTTTCCGCTGAGAACGAGGAAATTCGCGT 224459 30 100.0 34 AAATTCGCGT .............................. TCTATGAATCTTTCACGCACCCACATGTGACCGA 224523 30 100.0 36 ATGTGACCGA .............................. TGGATTTCCTTGTATCTTCTGAAGATTTCATCGTAT 224589 30 100.0 37 TTCATCGTAT .............................. ACAATCAGCAGGCACCCTTGCATGGATCAAAGCACTC 224656 30 100.0 40 CAAAGCACTC .............................. TCAAGATGGTCTGTAATGACTCCTCCGCCTCCCATAATGA 224726 30 100.0 37 CCCATAATGA .............................. AAACTACCCCTCACCGACCCAAAACAGATCACACCAG 224793 30 100.0 36 ATCACACCAG .............................. TGGTCGGATCAGCAACCATAACAAGCCCTTTCTTAA 224859 30 100.0 36 CCTTTCTTAA .............................. CTTCCATACCAGCATGTAGTATATTACCCACACCAG 224925 30 100.0 36 CCCACACCAG .............................. CGAGGTAGTCAGAGGGATAGATGAGGACCTATACAG 224991 30 100.0 35 ACCTATACAG .............................. TGGAGGAACCCGTAGAGATAGAACTCGAGGACTGG 225056 30 100.0 37 CGAGGACTGG .............................. AGACAGGAACGCGGAGAAAATCATCCGCGTCCAGAGC 225123 30 100.0 37 CGTCCAGAGC .............................. TGAGAATGACTTCCAGGACAAAAGCATCCAGGCACTT 225190 30 100.0 38 CCAGGCACTT .............................. TGTCATGGTGTTTTGGATGATTGCGCCCGGTTTCTGTT 225258 30 100.0 38 GGTTTCTGTT .............................. TCTTCGATTAGGCTGGCTTTGAGTTCATTGTTTTCTGT 225326 30 100.0 36 TGTTTTCTGT .............................. TTTCTTCACAAGGACACTCGCCAGCCGCATACTAGA 225392 30 100.0 36 GCATACTAGA .............................. TGTACAGGTTTCCGTCCTGGTCTTCGTAGAAGTGGA 225458 30 100.0 36 TAGAAGTGGA .............................. TCTTTCCCTTGGATCTCCGCATCTCTGCGGAGATCT 225524 30 100.0 36 GCGGAGATCT .............................. CAGCAAAAGCAGAAGGAATCTACAACCCAGTTGCAA 225590 30 100.0 38 CCAGTTGCAA .............................. ACTCAAAGTGATTACTCTATCTCTCTGAATTGTAATGA 225658 30 100.0 37 ATTGTAATGA .............................. GAATAGGGTCTTTTGATATAGTCCACCATAGTGTTTC 225725 30 100.0 35 ATAGTGTTTC .............................. AAGTCTACAAAGACACAGACAAAACCAACAAATAT 225790 30 100.0 38 CAACAAATAT .............................. CCCCGTGGCCTGGTTGTACTCGTATTGTGTTTCGAATG 225858 30 100.0 35 GTTTCGAATG .............................. GAGGATCGTGCAGATTTCGTGAGAGAAGGTATTCA 225923 30 100.0 34 AAGGTATTCA .............................. CAGGGCAGAAGGTTAAGATAACCCCCCATCTTAG 225987 30 100.0 38 CCCATCTTAG .............................. GAGCAGGTAATCTGCTGGTAGGAACTGTGTCTTGTTCA 226055 30 100.0 32 GTCTTGTTCA .............................. GATAGTTCCAGGGCGTTTTCGAGTTTCCTTTT 226117 30 100.0 35 GTTTCCTTTT .............................. TTGTGAGTTCGCGGGCTAATTCTAGGGGTGGTTTC 226182 30 100.0 37 GGGTGGTTTC .............................. TCATCTATGATCACATCTAATTGGTGCTGCCTGAGTG 226249 30 100.0 36 TGCCTGAGTG .............................. CAAAAATAAGAAAACAAGGAAGCTACTACTATGTAG 226315 30 100.0 37 TACTATGTAG .............................. CATATACCAGCTGATTATTAAGGGGGCAAGGTATTAT 226382 30 100.0 AAGGTATTAT .............................. GCTTATTTAT ========== ====== ====== ====== ========== ============================== 36 30 36 GTTAAAATCAGACCAAAATGGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.90,-0.80] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [63.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [634,83] Score: 0.18/0.18 # # Final direction: F [4.68,0.27 Confidence: HIGH] >NC_014410 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2723692 30 96.7 37 TCCCACACGT ............G................. GTGCAGGTGTGTCTTATATAGGGATTCAAATGTTGCC 2723759 30 100.0 35 AAATGTTGCC .............................. CTGGCTGGAGCATTTTGAACATGAGCCCCTCTCTC 2723824 30 100.0 36 CCCCTCTCTC .............................. TTACGTTATTGATCGTACTAGTTACACCATTTTTCA 2723890 30 100.0 36 CCATTTTTCA .............................. AATGGAACTCCAGTAACAAGCGGATTTACACTTGAA 2723956 30 100.0 37 TACACTTGAA .............................. ACAAAATCAAGTAGGACTGCATCAGGATTGATGGTAA 2724023 30 100.0 36 TTGATGGTAA .............................. CTTGTCAGGGTAGACGGTAATTTTTTTTATATATGT 2724089 30 100.0 37 TTATATATGT .............................. CCATAACCTGACCATTAGAACCATCTTCTTTGTATGT 2724156 30 100.0 36 CTTTGTATGT .............................. CGTGAGGGCACAAAAGAGCCAACATTAGCAAACTTG 2724222 30 100.0 36 AGCAAACTTG .............................. TCCTGCTTCATTAACAATTGCTAATTGAGTAATGTT 2724288 30 100.0 35 GAGTAATGTT .............................. AGAACGTTAAAAACTTGTTATCAATTAATGGCGGA 2724353 30 100.0 37 TAATGGCGGA .............................. TATCTTTTTCTGTGAGTTTATCCTGCACTATTTTTTC 2724420 30 100.0 36 CTATTTTTTC .............................. TAATACAAGATGCAGCGCAAACAACATGGCAAGCTG 2724486 30 100.0 37 TGGCAAGCTG .............................. CAGCAAAAGCAGCTTTCCATTTCAATGCCCTAAAAGG 2724553 30 100.0 36 CCCTAAAAGG .............................. TAATGAAACGATAGATAAAACTAATACTGCATAGAA 2724619 30 100.0 36 CTGCATAGAA .............................. CTGTTGGTGATGCAGCTATATTGATTTCCAATTTTC 2724685 30 100.0 37 TCCAATTTTC .............................. TCTTTTTTATTGTTTTGAAAAATGTAAAGATATATAT 2724752 30 100.0 36 AGATATATAT .............................. TTTGTTTTTTGCTCCGTTTATACGACAATTTGAACC 2724818 30 100.0 38 AATTTGAACC .............................. CGTCCAGAATATGCCATTGCCTTTCGTTTTTTTGTATA 2724886 30 100.0 36 TTTTTGTATA .............................. TCCGCCGACAAGCTGCGCAACCACAAGAACGTCATC 2724952 30 100.0 36 GAACGTCATC .............................. CTCGAATTTGACAAACCTAATAATATCTCTACTTCA 2725018 30 100.0 36 CTCTACTTCA .............................. CTCATGGTATTTTCGTTTCAGCCTTTCCGCATATTC 2725084 30 100.0 36 CCGCATATTC .............................. TTAGAATTAGAACTCTAAAGTTTTTTAATTGTGAAA 2725150 30 100.0 36 AATTGTGAAA .............................. AACAAGTATGCAACAGACGAATTCTTGTCTAAACTG 2725216 30 100.0 36 GTCTAAACTG .............................. CATTGACTACATCGAAGTACCGCCGGAAATAGACTA 2725282 30 100.0 34 AAATAGACTA .............................. TAACAGCAATTAAAGACTTTGAAACATCATTTTC 2725346 30 100.0 36 CATCATTTTC .............................. TGGCTTTGTTGCTTTGGTACTAAATTCTTTTTGTAT 2725412 30 100.0 37 CTTTTTGTAT .............................. AATACATGCTTCTGCTGTAGTTCCACTTCCTATAAAC 2725479 30 100.0 37 TCCTATAAAC .............................. TACAAGCCGGCTCTATGCCGGCTGCTTTTTTCCTGCT 2725546 30 100.0 37 TTTTCCTGCT .............................. CATTAATTTCAATCATCTCCTTTTTTGCTATGTAATG 2725613 30 100.0 37 CTATGTAATG .............................. GCTGTTGTTGGTGCTCATGATGACCGTGTCATGTCTT 2725680 30 100.0 35 GTCATGTCTT .............................. GAACCTGTAGTAGAAGATAACACAAGTACAAAAGA 2725745 30 100.0 38 GTACAAAAGA .............................. ACATGTCAGATATCCGAATTGGATACCTACTATTGAAA 2725813 30 100.0 37 ACTATTGAAA .............................. CCAGCTATGGCTTGTTGACTTGCTACGTCCTCGACCA 2725880 30 100.0 36 TCCTCGACCA .............................. CAGGTGATGGAGATCAAAAGACGATCTCGTATTCTT 2725946 30 100.0 35 TCGTATTCTT .............................. TCAATAGATTCAGTGATAAATTTAGTAAGAGCAAA 2726011 30 100.0 38 TAAGAGCAAA .............................. CCTATTCTATGTCCGTCCAATACACCTAATTCAACGTA 2726079 30 100.0 37 ATTCAACGTA .............................. GCACTTTAAGGAATGCACCTAACCTCCACAGTGCCTT 2726146 30 100.0 35 ACAGTGCCTT .............................. GGGCGTATCGGAAATATTTCAAAGTGTATAAAATA 2726211 30 100.0 36 GTATAAAATA .............................. CAATTACGATTATTGGATTGGCTTTAATGAAATTGA 2726277 30 100.0 37 ATGAAATTGA .............................. GGAAATTTTATTTATTCTCTCCCCCATCCCGATTTTG 2726344 30 100.0 CCCGATTTTG .............................. CCCCACGAAA ========== ====== ====== ====== ========== ============================== 41 30 36 GTTTCAATTCCACTATGGTTAGATTAAATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [178,243] Score: 0/0.18 # # Final direction: R [0,5.28 Confidence: HIGH] >NC_014410 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 315799 30 100.0 36 GAAGTGAAAG .............................. AATGCAATTGATAATAAAGTAAACAATATGCAGATT 315865 30 100.0 35 TATGCAGATT .............................. TGTAAGTAAGTTGATGAAGAGCCAGTAACATCTGA 315930 30 100.0 37 TAACATCTGA .............................. TTTTGCATTTATATTTGCTCTCGATTTCTCTTATATA 315997 30 100.0 36 CTCTTATATA .............................. AATAAATGACTTAGAAAAGACATCTTATGCAAGCAC 316063 30 100.0 ATGCAAGCAC .............................. CTAACTCTTT ========== ====== ====== ====== ========== ============================== 5 30 36 GTTTTTAGCCTACCTATGAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [621,544] Score: 0/0.18 # # Final direction: F [5.37,0 Confidence: HIGH] >NC_014410 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 309414 30 100.0 36 AAGTGAATGA .............................. TTTTACAAATACAGTATCCAGTACAGGTGCTACAAA 309480 30 100.0 36 GTGCTACAAA .............................. TGACTAAAATTAAAGCAGTAGCAAGAAGAGCAGGTT 309546 30 100.0 37 AGAGCAGGTT .............................. CCTCCTTCTGATATATTCTTGTCTTGATTTCTTGAAA 309613 30 100.0 41 TTTCTTGAAA .............................. TTAGATCCAGTTATATTATTAAATCTTATTTTTATCCAAAA 309684 30 100.0 36 TTATCCAAAA .............................. GGTGTAAAGATTTATAAAAAGCTTTCAGGTAGTAGA 309750 30 100.0 36 AGGTAGTAGA .............................. TTAGTCTTAACAACAATACCTTGACGCAAAATACAA 309816 30 100.0 38 CAAAATACAA .............................. CTGTCAACATAGCCATTATTGAAATACTTTGGCGGAAG 309884 30 100.0 35 TTGGCGGAAG .............................. CCGCTTGCGATAGCGTCTTCGACAGGACTTTCAAG 309949 30 100.0 36 GACTTTCAAG .............................. TCATAACGAATAAATTCAACCTTCCCGCCCCTTTTG 310015 30 100.0 39 GCCCCTTTTG .............................. GCTAATACAAACGCCCAGGCAGGAAGACAAACGGCCCAG 310084 30 100.0 37 AACGGCCCAG .............................. TCAGATGCAAAAGCTAAGGATTTAATATACGCTGCTA 310151 30 100.0 37 TACGCTGCTA .............................. CTTCGTCCCTGGACATTGGAGCGGCCATGTTTTCGTC 310218 30 100.0 36 TGTTTTCGTC .............................. GCGTCCAAGATCGCCATAAGAATGTCCTTCTGGTGG 310284 30 100.0 37 CTTCTGGTGG .............................. TTAGTAACCTTAAACAATCTCATAGTATCATATCGAT 310351 30 100.0 38 TCATATCGAT .............................. CCTATGACAGTTAGCATATCCAGTACCTTGTCCGCTTC 310419 30 100.0 36 TGTCCGCTTC .............................. TTGTATCCGTATATCGCTCCGGCCAAGCCGCCGGTA 310485 30 100.0 37 GCCGCCGGTA .............................. TCAATACAGGTTAAGAAATGGAATATCTCACCTGTAT 310552 30 100.0 39 TCACCTGTAT .............................. AATGTTCTAATTGTTTAATTTTGTCATTCATAACATTAA 310621 30 100.0 36 ATAACATTAA .............................. AGAAGAATGTCCTCCTGCTTAATTCCTCCGTCTCGC 310687 30 100.0 39 TCCGTCTCGC .............................. CCCTGACCCTTATCCTCCTTGGTGTCGCCCTGATCTTCC 310756 30 100.0 39 CTGATCTTCC .............................. CATAATCTTCTAAACATTTAAAATTGTCTGATAATAGAT 310825 30 100.0 39 GATAATAGAT .............................. ATAACAAAATACTCCCAAGAATTCCCGCTTTCTGTATCC 310894 30 100.0 35 TTCTGTATCC .............................. CTTTCTTTCTTTTTTGTGTTCAATGATCCATGTTG 310959 30 100.0 39 ATCCATGTTG .............................. CATGTTGGCGACTTCTAAAAGCGCTCTATCGCTTGTATA 311028 30 100.0 36 CGCTTGTATA .............................. AAACCTTCCTCTCCAGAATAAGGCAATGTGTACCAC 311094 30 100.0 41 TGTGTACCAC .............................. ACATTTTTAATAGCTCTGAACCAACCTGGAATATGTTTTAT 311165 30 100.0 36 TATGTTTTAT .............................. TTCGTACCAACCAGTCACCAACAGGTTCTGCCAAGA 311231 30 100.0 37 TCTGCCAAGA .............................. CATCTCCAGCTTGTCACCGTTCAATATAGCGACTTGA 311298 30 100.0 37 AGCGACTTGA .............................. AATAATATGCATAATGGAAAGGCGATATAACAATAAG 311365 30 100.0 38 TAACAATAAG .............................. TTATATACTTGTCAGAAAAAATAATAAAATAATAAAAA 311433 30 100.0 35 ATAATAAAAA .............................. TGATAATATAATTCCGTCTATATAAGAGCCGATAT 311498 30 100.0 37 GAGCCGATAT .............................. TCTGTCAAAGTTATCTTTTTCATTCAAAACATCTCCG 311565 30 100.0 37 AACATCTCCG .............................. AATAATATGCATAATGGAAAGGCGATATAACAATAAG 311632 30 100.0 38 TAACAATAAG .............................. TTATATACTTGTCAGAAAAAATAATAAAATAATAAAAA 311700 30 100.0 37 ATAATAAAAA .............................. ATGTCAGACCATTTTAATCCCAAGAGTTCACCCCGGC 311767 30 100.0 38 TCACCCCGGC .............................. CGCCATTCTTCTATTGTAACCACCTCATTATAAATATT 311835 30 100.0 37 TATAAATATT .............................. TATTCATTTACCTGAAATGTTTCAAAAGTTCTATGCC 311902 30 100.0 38 GTTCTATGCC .............................. ATTAATTTTGCTACTTCTGCAACTGTATAAAGTATTTC 311970 30 96.7 37 AAAGTATTTC .................G............ TACCTAAAGAACAAAGCAGAGATGGGCAAAGCAACAA 312037 30 100.0 37 AAAGCAACAA .............................. TTAGTTCTCCAGTTATTTTGTTATAGTCCCAAATGAT 312104 30 93.3 CCCAAATGAT ............................TT AGTTAGGA ========== ====== ====== ====== ========== ============================== 41 30 37 GTTTTTAGCCTACCTATAAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.80,-1.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [363,1013] Score: 0.18/0.18 # # Final direction: F [5.28,0.18 Confidence: HIGH] >NC_014410 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 318047 30 100.0 36 AAATTTTTAA .............................. TTTCAAATTCGACTTTTTGCACTTCTTATAACCTCT 318113 30 100.0 37 TATAACCTCT .............................. CGTCCCAAGCGTTGCAGATCCATACATAATACAGCGT 318180 30 100.0 40 AATACAGCGT .............................. CTTGGCATGTTCAAGGATAAAGTTGATGTAAACGTGGATG 318250 30 100.0 39 AACGTGGATG .............................. ATTGCTTCTATAAGTTTAAACTGGACCATCTCGGCTTTT 318319 30 100.0 37 CTCGGCTTTT .............................. TTTTTCTCCTGACTGATGCCATACTTCTTCCTAAATC 318386 30 100.0 37 TTCCTAAATC .............................. CAATTATATGTTATGTTTAGTTACAAGTCAATTTTAA 318453 30 100.0 36 TCAATTTTAA .............................. ATTCAAACAGTTAATTGAACTTATAGAAAAACTTTA 318519 30 100.0 36 AAAAACTTTA .............................. CTTAGTACAATTGCCGACACACAAAACCTATATAAA 318585 30 100.0 36 CCTATATAAA .............................. ATAGATCACACGGCCCCAGGGGATATAAATGTGACA 318651 30 100.0 36 AAATGTGACA .............................. GTGTTTCGGCAGACATACCGTAAATGATACCAAATG 318717 30 100.0 36 ATACCAAATG .............................. AGTAGCCAATATGTGTGTATACCATTACCGCTATTA 318783 30 96.7 37 ACCGCTATTA A............................. TTGGATTCCGCATATGGCCAACACATAGGAAACTCAA 318850 30 100.0 38 GGAAACTCAA .............................. AAACTAACAGGCATAGAAGAATATTTAAAAAAGATACA 318918 30 100.0 35 AAAAGATACA .............................. TGTCAGCAGGTAATTTCCATTCTAGAATCCATCTG 318983 30 96.7 AATCCATCTG .............................T GCAAAATAGACGTATTTGCCGATACGTCTATTTTGTT ========== ====== ====== ====== ========== ============================== 15 30 36 GTTTTTAGCCTACCTATGAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [78.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [130,238] Score: 0/0.18 # # Final direction: F [6.05,0 Confidence: HIGH] >NC_014414 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 1517235 31 100.0 33 NNNNNNNNNN A.G............................ TTTTGCGAAGTGCGTTTATGATGACCGGCATTG 1517299 31 100.0 34 NNNNNNNNNN ............................... GATTCCCTGGGCTCCTCCGCCGTGCGCTATGATG 1517364 31 100.0 34 NNNNNNNNNN ............................... CGCTGATGTGACCCTTGTCAATCAGGTGTTGCCA 1517429 31 100.0 33 NNNNNNNNNN ............................... GCGCAGGTCGTGGCCCGTCCAGCCGCACCACAA 1517493 31 100.0 35 NNNNNNNNNN ............................... GTGATGAGCTTGAGGCCCACGGCCCGCTACAGGGG 1517559 31 100.0 33 NNNNNNNNNN ............................... TCTTGAGGTCGCCGATGAATTTATCACCGCGCT 1517623 31 100.0 33 NNNNNNNNNN ............................... GGGCACGGCAGAGCCGGATGCCTCGCCAGATGT 1517687 31 100.0 34 NNNNNNNNNN ............................... CCATTGGCCCTATGCTATTTTTGTCGAGGGCAAT 1517752 31 100.0 33 NNNNNNNNNN ............................... CCCAACTACGCGGGGGCCGTCCAGCTTATGCAG 1517816 31 100.0 34 NNNNNNNNNN ............................... GGGATGGGGCAAGCGGGCGATCACCGCTTACCAC 1517881 31 100.0 34 NNNNNNNNNN ............................... AAGGGACAACCGGCGCGACGGTGAGCGTGAGACG 1517946 31 100.0 33 NNNNNNNNNN ............................... ACCGCAACAGAACGCTGGATGCGGGGTCGTCAA 1518010 31 100.0 33 NNNNNNNNNN ............................... TATTGAGATCGTTGAGCCGAAACGACGGCGGCA 1518074 31 100.0 34 NNNNNNNNNN ............................... AAGCAAAATGAATTGCGCACCACGACAGATCAGG 1518139 31 100.0 34 NNNNNNNNNN ............................... GTTTCGATGGGGGAAGCCTGTGAGTATTTATACG 1518204 31 100.0 34 NNNNNNNNNN ............................... CATCGCTCTCGCCCTCAGCGTCTTCCCAGTCTTC 1518269 31 100.0 35 NNNNNNNNNN ............................... TTCTTAACACAGACCCGCGAACCATCCGGCGTTGG 1518335 31 100.0 33 NNNNNNNNNN ............................... CTGGCCGAGGCGATCAAAACCTGTCCGTCGGCG 1518399 31 100.0 35 NNNNNNNNNN ............................... CGGGCCGTGGGCCTCAAGCTCATCACCATTGGGCA 1518465 31 100.0 34 NNNNNNNNNN ............................... CTCAATCATTGGCCTTCCCTTTCTTCTGTGGCCT 1518530 31 100.0 33 NNNNNNNNNN ............................... CGCAAGGGGTAACACCAGCTGCACGTTGCCGGG 1518594 31 100.0 33 NNNNNNNNNN ............................... TTGCAGATAGACCCACTCGGCGAGCGGTGGCAT 1518658 31 100.0 35 NNNNNNNNNN ............................... ATTATGGGAGAAAAAATCGCGCGGTGGAAAGGGTC 1518724 31 100.0 33 NNNNNNNNNN ............................... CCGCGTTGTTGTGGACACTGGACGGCGGCCCGT 1518788 31 100.0 1 NNNNNNNNNN ............................... NNNNNNNNNN ========== ====== ====== ====== ========== =============================== 25 31 33 GTTTCGATCCACGCCCCTGTGAGGGGGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [26.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [67,191] Score: 0.18/0.18 # # Final direction: R [0.37,1.23 Confidence: MEDIUM] >NC_014471 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 1242963 25 100.0 40 ATAATACTCG ......................... GACTTTTGCCATGATTTTCCAGATTTTTGCGATAGAGATA 1243028 25 100.0 42 GATAGAGATA ......................... ATGGCTGAAAACGCATCGATTAACGCTGCAAGTGATGATACA 1243095 25 100.0 52 TGATGATACA ......................... ATCCCGCAGTATACTACAGTAGTTTGTCAGCATGGGTATATGGATACCTAAT 1243172 25 100.0 43 GATACCTAAT ......................... GTCAAGATAATGCCGAAGATTAGGAAGACGAGGAAGCTCTACA 1243240 25 100.0 44 AAGCTCTACA ......................... AATGACGTTTAAGTATCCAAGCTTTGATAAACTCTGGCAGTTCT 1243309 25 100.0 44 TGGCAGTTCT ......................... TCTTCTTATACTGATCTAGATACATCATAAGTATTGTCTCTAGC 1243378 25 100.0 43 TGTCTCTAGC ......................... ACCTCTAACACTCTTCCACCTATCAACCCATGTCTCTCAAGAG 1243446 25 100.0 54 CTCTCAAGAG ......................... ACTGAAATATTGTATACAATATGAATAGCCATATATACAATGCAACTGTAGCCA 1243525 25 100.0 40 ACTGTAGCCA ......................... ATACGATCCTGACTGTGTGGATCTAGATTGCTACTACGAG 1243590 25 100.0 45 CTACTACGAG ......................... ATCACAGACGCAATGTCTATCGCATAATCTTCGCAGAGTCCTGCA 1243660 25 100.0 46 GAGTCCTGCA ......................... TATCTATCACATAAAGCCTTGAGGCTACCAGCGCTTGTAGCGAAGT 1243731 25 100.0 43 GTAGCGAAGT ......................... TATACAACTCTGTGTTTAGTGCTACATTTGATATTGCTGTTGT 1243799 25 100.0 52 TTGCTGTTGT ......................... ATGTTATACTTTGTGAAATAGTGTCTCTTCCCCCACTTTGGAGGAAGACCTG 1243876 25 100.0 50 GGAAGACCTG ......................... TAGGAGGAGGGAACATGACTACTGTATTAAGATCAACGACGCTGTCTACG 1243951 25 100.0 48 GCTGTCTACG ......................... AGAGGACTCGGTCTATGAAGATCGCTGAGTGGAATTCTCCCTTCTTAA 1244024 25 100.0 50 CCCTTCTTAA ......................... GTGAATATCACTAGGATTGAATCGCTCGACACGTGGCTCTGGATAGTCAG 1244099 25 100.0 49 GGATAGTCAG ......................... CTTTCTCACAGCTGTGATCATGGTGAGTATGGATTGTGGTATATAATCT 1244173 25 100.0 47 TATATAATCT ......................... CATCTTAGAGCTGCTGCTATTCTAGCCATTATGTCTACTCCAGCCTT 1244245 25 100.0 42 CTCCAGCCTT ......................... GTTGAAAGAGATAGACAGAACTCATGATACGGCATACTATGC 1244312 25 100.0 48 CATACTATGC ......................... GTATAGTCCATGACATTCTTACAATTAGATCAGTATTTGTCGGTAGCC 1244385 25 100.0 51 GTCGGTAGCC ......................... CTTAAAGAAATACATCTTCACATCACTTGCAAAAGCCTCTGGAGACCTTAT 1244461 25 100.0 41 GAGACCTTAT ......................... GTCTGGGGAAATATAGCGTATTATATCAGGAAGCTTGGGAT 1244527 25 100.0 50 AGCTTGGGAT ......................... TTGTGATGTTCTTTAGATGTGATACGAACTGCTTTGTTGTTAGAGAGAAG 1244602 25 100.0 43 TAGAGAGAAG ......................... ATATATATTATATTAGGTAGAGAGAATAGTTTCTGTCGGGTCT 1244670 25 100.0 49 TGTCGGGTCT ......................... TTATTGGACTTATATATACTGGAAAAGCATCTTTCTCATAATCAAACAT 1244744 25 100.0 48 AATCAAACAT ......................... AGAGAACCATGTTGAAAGCTCCTGCATTCTAGCATATACCCATCCCTG 1244817 25 100.0 45 CCCATCCCTG ......................... CTTTCTCACAGCTGTGAGCATGGATTGTGGTATGTATTCCTGTGG 1244887 25 100.0 42 ATTCCTGTGG ......................... AGATAGCAAAGTTTAAACTGATAAACATGATTATTGGAGCAT 1244954 25 100.0 43 ATTGGAGCAT ......................... CTTCCTTAGCATCTTTGTATTCCATAACATCTTTCAAAGCATT 1245022 25 100.0 49 TCAAAGCATT ......................... ATCCCTATGATAGCCATTGCAATCAACAGCCATTCCAATCCTATACCAC 1245096 25 100.0 47 CCTATACCAC ......................... ATAAATCTATCTAGCCTAATTCCCGACTTATCTGACATTCTAGGAAA 1245168 25 100.0 47 TTCTAGGAAA ......................... TCTACAGAACACTATGTATTAGTGCCAATAGAAACCTTGGTAGATGT 1245240 25 100.0 TGGTAGATGT ......................... ACTTATATTA ========== ====== ====== ====== ========== ========================= 33 25 46 GAAACTCCCAAAAGGGAGTAGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.10,-5.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [38,375] Score: 0.18/0.18 # # Final direction: R [0.27,0.55 Confidence: MEDIUM] >NC_014471 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 536388 24 100.0 46 GCGTAGAGTT ........................ ATAGAGGTATATACGGGAAGATCCTTGTTTACGATATGTACTACAA 536458 24 100.0 45 TGTACTACAA ........................ TGAGCTTATAAAAAGAATTGTTACCGACATAGAGAGACATACTGA 536527 24 100.0 46 GACATACTGA ........................ GGGAATATATGAACACAGCGGTATACCAATTTATGTGATTGATACA 536597 24 100.0 47 GATTGATACA ........................ CTTAAGGAGAATGGCTTTGATCCAACAAGAACAATTGTATTCTACAA 536668 24 100.0 44 TATTCTACAA ........................ CACTAGGTTGGCGATTGCAGGCTCAATGATTGGAGAAATACGGG 536736 24 100.0 43 GAAATACGGG ........................ AGCTAATCGAGGAAAAAGATTATGACGCAATGGCATTCATAAA 536803 24 100.0 46 CATTCATAAA ........................ AATGTTCTCGTTCTTTGGGAACTGGGGCGATCCAGATAAATACAAT 536873 24 100.0 44 TAAATACAAT ........................ GAAGGTAGAGCCATAATTGATGTAGCAATGGGTGGTTCAAAAGT 536941 24 100.0 GTTCAAAAGT ........................ CGGGTTATGGACTCTCTATTCTTTTCTTATCCTAGTC ========== ====== ====== ====== ========== ======================== 9 24 45 CTTTCAATTCCATATATTGGATTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.83%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [53.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [450,361] Score: 0/0.18 # # Final direction: R [0,4.77 Confidence: HIGH] >NC_014471 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 546658 24 100.0 47 TCATAACCCG ........................ CTCTGGAATCTCATCGCTTACATTCATAGTTAGACCTGGCAAGCAGT 546729 24 100.0 47 GGCAAGCAGT ........................ TACAGACCTATAACATTGAGCAAGTATCCAGAACAGTATGAAAGGAA 546800 24 100.0 46 ATGAAAGGAA ........................ TTACCCGTGAGCGGATCCATCTTCGAATATGTTATGAGTCCTGTAA 546870 24 100.0 45 AGTCCTGTAA ........................ ATCGTATCACGGATCTTGGCAAAGACGTCAATATCAGAAATTGAG 546939 24 100.0 50 AGAAATTGAG ........................ ATAGAGAAGATATGCAGCCAGACTAGACCTGATAAACACTCTACAGTTAA 547013 24 100.0 44 CTACAGTTAA ........................ GTAGACGTAGCAACACGCGGCCACAGACCGCCATCCACCTTCAA 547081 24 100.0 49 CCACCTTCAA ........................ TGTGGAGAAAACTTGGAAATGATTTTGATCAAACACAGAAATGGAATCT 547154 24 100.0 44 AATGGAATCT ........................ CACTGAGTTCTCATTAGTTTTTTCTTTTAAGGTGTGTCCACCTA 547222 24 100.0 45 TGTCCACCTA ........................ CTGAGGGGCTGGCCTCTGTGATTCTGAGAGCCATTTGACAACTAG 547291 24 95.8 TGACAACTAG ........C............... TAGCTATTGA ========== ====== ====== ====== ========== ======================== 10 24 46 GAATCCTATAAATGGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.83%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [418,81] Score: 0.18/0.18 # # Final direction: F [5.09,0 Confidence: HIGH] >NC_014471 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 1494064 24 100.0 43 TCATAACCCG ........................ TACAGGTTGTCTTCCGATCATGACTGGAACACCTGCGAGAGGC 1494131 24 100.0 51 TGCGAGAGGC ........................ TTGCAAAGAATATTGTTCAGCTGGGCGAGAACGGGGCATCTGGACACGACT 1494206 24 100.0 42 GGACACGACT ........................ TCTTCGATGCGTGGTACGATGAGTCGAAGAAGCAGTACATAG 1494272 24 100.0 49 CAGTACATAG ........................ TGTTGAAAATACCGCATAATCATAACCACCGTAAAACGCTAGAACACCT 1494345 24 100.0 44 TAGAACACCT ........................ ATCTTCCGTTATAACAAGGTATTCCGCAAGTGTAGCTAGTTGTG 1494413 24 100.0 45 GCTAGTTGTG ........................ TACTTGGGATGATAGGTCTTGGTGTAGCTACATGGATATTTGTTG 1494482 24 100.0 48 ATATTTGTTG ........................ AGGTATGTTATCAGGTAGTAGGTCTGGGCTGGGATAATTACGTGGGGT 1494554 24 100.0 42 TACGTGGGGT ........................ AGCCATATCCCAACCTATTATTGCAAAATTATATTTATTTAG 1494620 24 100.0 46 ATTTATTTAG ........................ TTCTTAACAATGTCCTCGACTATATGTATCTGGAGAGCGTTTGGTA 1494690 24 100.0 49 GCGTTTGGTA ........................ ATTTCCAGATCGGAAGTTGTTATCATTTATCCACACACTATACTTTATG 1494763 24 100.0 48 ATACTTTATG ........................ GTATATCCTTAGCTGCTTAAGTTTCTCTTCAAGCATCTTCTCATCTAG 1494835 24 100.0 46 TCTCATCTAG ........................ AACTATGTTATATGTGAAGAACCCTACAAGTGTGTTTGTAAATCCA 1494905 24 100.0 48 TGTAAATCCA ........................ TTGGAATTCTGTATGTTATCATTGAACCTGCTAATGGAATTGACACTA 1494977 24 95.8 ATTGACACTA ......................G. TGGGTGTG ========== ====== ====== ====== ========== ======================== 14 24 46 GAATCCAATAAATGGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.83%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [60.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [556,78] Score: 0.18/0.18 # # Final direction: F [5.09,0.27 Confidence: HIGH] >NC_014471 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 562779 24 100.0 51 CTATAGCTTC ........................ CCAGAAATAACTCAGGAGCAGTTACCAAGTTATTTACAAGATGCAATTTCA 562854 24 100.0 44 TGCAATTTCA ........................ TTAAAGCACATCAGTTTATAGAAGCATTCTTTGAGGAATTGGAG 562922 24 100.0 45 GGAATTGGAG ........................ ATGCACTATTGATCCTATAGATGATGGTATAATTCCCACAGCTGT 562991 24 100.0 46 CCACAGCTGT ........................ GGTCTAAGAAAGATATTGTAGAGGAAGCTGTTAGGTTGTATGTACT 563061 24 100.0 45 TGTATGTACT ........................ TTCCAGCCTAAGACCTGAGTATACTAGTAACTTGTATACAGTACT 563130 24 100.0 47 ATACAGTACT ........................ AGGACACTCTAACAGTTTCAGGTCTGCCTGAGGCAGAATCAATTTCG 563201 24 100.0 47 ATCAATTTCG ........................ TTTCATTGTTGATACAGCGACATTGGCATCGTTACAAAGTTGTTCCA 563272 24 100.0 46 AGTTGTTCCA ........................ ATACTTTGATAGGCAATGTGTAAAGTTTGTGTTGAAGGTGATTAAA 563342 24 100.0 43 GGTGATTAAA ........................ GCGAGAGAGCCCAAGATAGTCGTAAGCGATACGGCAGCTGATG 563409 24 100.0 41 GCAGCTGATG ........................ AGACCCTTAGACCTCTCAGAGAATACCCTGTACAGCACATA 563474 24 100.0 44 ACAGCACATA ........................ AATCAACTAAACTAATAATCAGAATCAAGTATGGTGAACATGAT 563542 24 100.0 42 TGAACATGAT ........................ TCCAGATCAGAGGCGTGGATTGAGGAGTATAGGAAGTATATG 563608 24 100.0 45 GAAGTATATG ........................ GCCCAACATAGTCATGAAATGGGACTTCGAGGACGGTACACCTCA 563677 24 100.0 42 GTACACCTCA ........................ ATGCTAGATTGAATAAATTCGAAGATGGGTGGGTCATTAAGG 563743 24 100.0 44 GTCATTAAGG ........................ CTACTTTATGATAGTCCTCAGCAAGAGACAGTTGCAAGATCTTA 563811 24 100.0 44 CAAGATCTTA ........................ CCGAAGAATTGCCGGAGCTCTATCCGCCTAGGAAACAAACCGAG 563879 24 100.0 47 ACAAACCGAG ........................ ATCTTCGCATTAGCAGATAATATCACTACATGGTTAGCAATATCCGT 563950 24 100.0 42 CAATATCCGT ........................ TTCGTGTGGCTGAAGAAATACCTAGGAAGTAAAGACTTGGAA 564016 24 100.0 AGACTTGGAA ........................ CGGGTCACGA ========== ====== ====== ====== ========== ======================== 19 24 44 CTTTCAATTCCATATATTGGATTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.83%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [70,308] Score: 0.18/0.18 # # Final direction: R [0,4.68 Confidence: HIGH] >NC_014471 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 566690 24 100.0 47 CCATAACCCG ........................ AGCAAATAGGACAATTAGACCGCCTTCTGCCCGCCCTACAGTTTTTC 566761 24 100.0 47 ACAGTTTTTC ........................ TCACCAATTGCGGTATCCAGCACATCCACAGCTATACGCTCTGTCTC 566832 24 100.0 43 GCTCTGTCTC ........................ GGAAGCTTGCCGACGTCACGGAGCGTTCCAATGTACTGCTCAA 566899 24 100.0 TACTGCTCAA ........................ CCACAATCTT ========== ====== ====== ====== ========== ======================== 4 24 45 GAATCCTACAAATGGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [524,44] Score: 0.18/0.18 # # Final direction: F [4.68,0 Confidence: HIGH] >NC_014471 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 566965 24 100.0 44 CCTCTCTTCA ........................ CAGAGACAAAGCATGTTGATGTTACTGAGGAGATTAGGAAGAGG 567033 24 100.0 43 TAGGAAGAGG ........................ CATTAACTCTTCTGCCTCTATAGCTTCTTCCTCAACGCCTGTA 567100 24 100.0 49 AACGCCTGTA ........................ TAACATGTCATTTAGTAGATCCACCAATGAGACCTGACCAGAGAGATAT 567173 24 100.0 44 AGAGAGATAT ........................ TGTGCTATACCAGCACCTATCCTCTTAAGTTCACCCAATGTTAT 567241 24 100.0 41 CCAATGTTAT ........................ TAAATGCCAACGCTTCATACATGTTTGACATTGTAGTTGAG 567306 24 100.0 39 TGTAGTTGAG ........................ GTTCAGCAGAATCATGAAGTTCAGCAGAAAGCTGTCTGA 567369 24 100.0 46 AGCTGTCTGA ........................ TCTATCCCCTGATAATATCTAGCACAGACTTTGCCAAGACCTTGAA 567439 24 100.0 47 AGACCTTGAA ........................ TTAGAACTATAGTATCTCACATCTCTCGACATACACCTTCCTCCTCA 567510 24 100.0 42 TTCCTCCTCA ........................ TGCTCAGAACCCTTGACAGCACAGCGTCTTCTAGGCTGGGCA 567576 24 100.0 44 AGGCTGGGCA ........................ GATATATCTTAGAACTCTATCCTTAGCCCAATCATATATGACAT 567644 24 100.0 45 TATATGACAT ........................ GTTTAGGCACTCCTCCTCGATTGACCGCATCTCAATATCTTCATG 567713 24 95.8 TATCTTCATG ......A................. GAAATAATAA ========== ====== ====== ====== ========== ======================== 12 24 44 GAATCCTATATATGGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.83%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [42,62] Score: 0/0.18 # # Final direction: F [4.91,0 Confidence: HIGH] >NC_014471 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 869202 25 100.0 44 ATAATACATA ......................... ATCTACATCACATTATCAGAGCTTCCATCCTATCTCTCAGAATC 869271 25 100.0 44 TCTCAGAATC ......................... GTCACTATAATGATATTGAACAAAGACGAGTCTATAACATATTC 869340 25 100.0 45 TAACATATTC ......................... TCTAGACATAGGATATTTAATGATGGAGATAGAGGAGATCAAGAA 869410 25 100.0 45 AGATCAAGAA ......................... CGGAGTCTATTCTGTCGCAGACCTCCTTGTAGACACATTTGTTGC 869480 25 100.0 50 CATTTGTTGC ......................... ATCTACACCACCTCTTTTTCCTGAACATGATTCTATAATATAGCTTTCTT 869555 25 100.0 43 TAGCTTTCTT ......................... ACTAGCACCATCTACGTCATTGGTTATCCGTTCCAGTTGCTAC 869623 25 100.0 39 CAGTTGCTAC ......................... GCCCAGCCACCGCCGCCCATGGGTTAAAGCATGATAGAT 869687 25 100.0 47 CATGATAGAT ......................... CAAGATGTTAGAAGAAAGTATGAGGCGATGAGAAGGGAAGCGCTTAA 869759 25 100.0 52 AAGCGCTTAA ......................... TTGCATAGTGGAGTATTATCCTTACAACATCTGTTGATGCTATTGGGTCCTC 869836 25 100.0 50 TTGGGTCCTC ......................... GTGTTTTCGCAGAGGAACATTAGGTGTGAAAGCAGTTTTATTAGGTATGT 869911 25 100.0 44 TTAGGTATGT ......................... GTTAACATCTCTATACTCATTAACACATATCTTAACATTCTCAA 869980 25 100.0 46 ACATTCTCAA ......................... ATGTGCTCAGCTTCAGGTAGTGTCTGCTCAACACTTCCTGTGGAAC 870051 25 100.0 47 CCTGTGGAAC ......................... ATTAGAAATGCTACTCTTTTCCCTGTCTCCGAGTCCTCCCAACTCAG 870123 25 100.0 53 CCCAACTCAG ......................... GTAGGCGGTGGCGGTGGCTGTGCTGGCTTTACATATGTTATAGTTGTATTTGT 870201 25 100.0 47 TTGTATTTGT ......................... TCTATGTTAGCTTCTATGTCGGAGTATATAACAATTCCTAAAGAATT 870273 25 100.0 46 CTAAAGAATT ......................... AGCCACGAATATATCCACGCAGCCAAGCTACACCAACTAGCCCTAA 870344 25 100.0 46 CTAGCCCTAA ......................... ATTTGATATAGATGTAGATGCACCTGCATGGATATATCTATTGCCA 870415 25 100.0 53 TCTATTGCCA ......................... AACGACAAACCAAATCCGTCATAGTCGTCGAACCATCCGTACCATAGTGTGTA 870493 25 100.0 45 ATAGTGTGTA ......................... TATCAGATATAGACGCAATGGACTTGACAGAGCTATCACTGAGAA 870563 25 100.0 43 TCACTGAGAA ......................... ATATAATATATATAGTCCAGAGACAGCAGAACACTACTCATCG 870631 25 100.0 50 CTACTCATCG ......................... ATAGGAGAATCATGGTGTAACAACATTGTTAGATGCTCCTATGATACTGC 870706 25 100.0 51 ATGATACTGC ......................... CTAGACTCATACACCAAAAGAATATACGCCTGCTCAACAGACTATGCACTA 870782 25 100.0 49 CTATGCACTA ......................... ATGAATACATATGATACATATCCCCTTGTGCCATTCAAGAATCTTATAT 870856 25 100.0 AATCTTATAT ......................... TGGCGATTCT ========== ====== ====== ====== ========== ========================= 24 25 46 GAAACTCCCAAAAGGGAGTAGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.10,-5.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [85.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [168,1042] Score: 0.18/0.18 # # Final direction: R [0.27,0.55 Confidence: MEDIUM] >NC_014471 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 856541 25 100.0 47 GTGGTACAAC ......................... TTAACAAGCAGCTATGGATCAGCTGTCATAGTCGGCGTCGCGGACGT 856613 25 96.0 47 TCGCGGACGT .................A....... TTAACTGTATCAAATCCGCAGTTCTGGTTCAGAGCAACGGACAAATA 856685 25 100.0 52 CGGACAAATA ......................... TGTTGTAACACTTTATTTATAGACTCGAGATCTAGTCTATACGCAATCGAGT 856762 25 100.0 46 GCAATCGAGT ......................... GTTCTACATAGATAGTAGCGGGAATACGGTTTACGTAACTGCGTAT 856833 25 100.0 42 AACTGCGTAT ......................... AGATATATGGACAGGTGCTACAGGCTATAGCATCCATCAGAG 856900 25 96.0 48 TCCATCAGAG ................T........ AGGATATAGCCTATAGCAAATATAAACACTCCAAAGAGACACAGAAAC 856973 25 100.0 49 ACACAGAAAC ......................... CAGATATGTGTCAGGCTTCCCCGTGCAATAAGGAAATATTTGGAGCAGA 857047 25 100.0 55 TTGGAGCAGA ......................... CTACTGCTTTGGGTACATATGTCTCTGGCTCTAGCCCTAGGAAGTTGTAGTATGC 857127 25 100.0 49 TGTAGTATGC ......................... ATTTTTTGAGGTGGGAAGATGGGAAGAGACTATGTATACCTTGGAAAAA 857201 25 100.0 48 CTTGGAAAAA ......................... TCTCCTCATGCCGAGCTTTACAAGTAATGAGTATGTAACTATGTCTAG 857274 25 100.0 46 CTATGTCTAG ......................... ACGTATGATTCCTCGATCTTATCCTTCTGGCAGAGTAGCGTTCCAT 857345 25 100.0 49 AGCGTTCCAT ......................... GTGGTAGAGTTATCGAGGTGGGTAGGCCAGATGTTGACGTTCACGAAGA 857419 25 100.0 46 TTCACGAAGA ......................... TCATTTACAAATCCGTATTGGTCGTTAGGAGAGCTCTCAAAGATAT 857490 25 100.0 49 TCAAAGATAT ......................... ATCAAGCAACAATAAGAGCTTGATCATCATAGCTATTGTACTTAGACCT 857564 25 100.0 43 ACTTAGACCT ......................... AATTGCCTTTGCAGGTTATTTCCTTGGGGCTTACAGAGACTAC 857632 25 100.0 45 CAGAGACTAC ......................... TTGGCTTGTGATCTGCGGACTTTGCGATTAACTATCTTGATTAAA 857702 25 100.0 44 CTTGATTAAA ......................... TGCTGGACATGGATAACCTCAATGGGCTGTCTTCCGATCATGAC 857771 25 100.0 53 CGATCATGAC ......................... AGGGATACTAACATCTCTATTGCCATTGATATTAACAATAGTTGTCATCATGA 857849 25 100.0 44 GTCATCATGA ......................... TATATAAGACGTATTCGCAGATAATAGATCTATTCGCTGTAAGC 857918 25 100.0 46 CGCTGTAAGC ......................... AATAGACATTCGTCAATAGCTGTGCCCTGATTGTTGCAACAACAAT 857989 25 100.0 45 CAACAACAAT ......................... AGGCGTGCTATCATGATTGGCTCTGTCGCTGCGATCCTGACTGTG 858059 25 100.0 CCTGACTGTG ......................... CGAGTATTAT ========== ====== ====== ====== ========== ========================= 22 25 47 CTTTCTACTCCCTTTTGGGAGTTTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.50,-5.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [66.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [175,199] Score: 0/0.18 # # Final direction: R [0.37,0.68 Confidence: LOW] >NC_014500 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3985144 28 100.0 32 AATTGCTACG ............................ GGAAACGCTGACACAGCCGGTGTTACCACCGC 3985204 28 100.0 32 TTACCACCGC ............................ CATCTGAAAACCTCCGGCCTTATCTAAATTCC 3985264 28 100.0 32 TCTAAATTCC ............................ CCAGCGAAATAGCGGTTATCCTAATGCCCTTT 3985324 28 96.4 32 AATGCCCTTT ............G............... TCCGTCGCCTCCGCGTTCGGTTCGCCAGGCTC 3985384 28 92.9 CGCCAGGCTC ...........CG............... GTACCGCCC ========== ====== ====== ====== ========== ============================ 5 28 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.57%AT] # Reference repeat match suggestion: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 92% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [102,134] Score: 0/0.18 # # Final direction: F [1.55,0 Confidence: HIGH] >NC_014500 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 4000264 28 100.0 32 ACTCGCTACG ............................ ATGACTGTTGCGGCACCAGGGTCAGACGCAAG 4000324 28 100.0 32 CAGACGCAAG ............................ TGACCGCCGCCGATGGTTTCGATTATCGAATC 4000384 28 100.0 32 TTATCGAATC ............................ AGGAGCCAAGCCAGTCACTGGACTACCGGACG 4000444 28 100.0 32 CTACCGGACG ............................ GTTTGCTTGCTCAATCGCAGACAGTAGCGGGT 4000504 28 100.0 32 AGTAGCGGGT ............................ AGCAGAACCGGCACGCACCGCGCCGGTATTGA 4000564 28 100.0 32 CCGGTATTGA ............................ AGAAATATTGATGGCGCGCGACTCCTTGGGGA 4000624 28 100.0 32 TCCTTGGGGA ............................ TGTTAACCCAGGTCCTCAAATTCATCATTGGT 4000684 28 100.0 32 CATCATTGGT ............................ TAAACGCCACTGGCTCTTTCGCCGCCCTGTCA 4000744 28 100.0 32 CGCCCTGTCA ............................ TCAGCCAACTCCATGCGATTACGTGGACGAGC 4000804 28 100.0 32 GTGGACGAGC ............................ TTCGTCATACCACGCGGATACATCATCGCCGT 4000864 28 100.0 32 TCATCGCCGT ............................ ACCGCCCGTCGGCACCTGGGCGACGAACTTTA 4000924 28 100.0 32 ACGAACTTTA ............................ TATTATCCGGCTTTGGGATGTACACCGGCTTC 4000984 28 100.0 32 CACCGGCTTC ............................ TCAGGCGGAAGAACGTCGGGATATCTCGTCAA 4001044 28 100.0 32 ATCTCGTCAA ............................ GCGGGAACTAACACCACTCAGTTGGCGACAAC 4001104 28 100.0 32 TGGCGACAAC ............................ GTACTGAGCCGAAAGAACTCTTTGGCTTAATG 4001164 28 100.0 32 TGGCTTAATG ............................ AAGCGGAACATCCCCGTTCCACCACATGCGCA 4001224 28 100.0 32 CACATGCGCA ............................ ATCACCAGCGCGTCGAGGTTGTCAAAGTCGCC 4001284 28 100.0 32 CAAAGTCGCC ............................ AATGAGCGCAAGCTGATTACTGGGTATGCAAA 4001344 28 100.0 32 GGTATGCAAA ............................ AACTGGTCATGAAGCCGGTCAAGGAAGGGCGA 4001404 28 100.0 32 GGAAGGGCGA ............................ GTGGCGCTCGATGCCGTGGCGCAGTGCGTCGG 4001464 28 100.0 AGTGCGTCGG ............................ CTCAACTGAG ========== ====== ====== ====== ========== ============================ 21 28 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 92% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [236,86] Score: 0.18/0.18 # # Final direction: F [1.42,0 Confidence: HIGH] >NC_014500 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3990820 28 96.4 32 CAATCGGTAT ................T........... GTTTGCCCTGGCCTGCTGTTCGGCGGCCATCA 3990880 28 96.4 32 GCGGCCATCA ................G........... CCGAAAGATGTATGGGGTGAATGGGACCGTTC 3990940 28 100.0 32 GGGACCGTTC ............................ CCCGTCTACGCGTTCACGCACTGGGAGTCGCG 3991000 28 100.0 32 GGGAGTCGCG ............................ GAGCCGCCGACAGACAGGTTATCGGGCAGGCT 3991060 28 100.0 32 CGGGCAGGCT ............................ GACATCATTTACAGCGGCTCACTCAGCAGATC 3991120 28 100.0 32 TCAGCAGATC ............................ AGGTGGCCGGTAACGTGGCATGGGTGCTTGAT 3991180 28 100.0 32 GGTGCTTGAT ............................ GTGTCGTAGTCCACTCGTTGCTGAACGCGCTC 3991240 28 100.0 32 GAACGCGCTC ............................ CCCATTGATGGCGAGCTCACAGCTCTCCCCAA 3991300 28 100.0 32 CTCTCCCCAA ............................ CCTCAGCAGGTGGATTGTGATAGTTACCTGCT 3991360 28 100.0 32 GTTACCTGCT ............................ GCCACGCTCAGCAGGGCTGAGTCGGCGATAGA 3991420 28 100.0 32 CGGCGATAGA ............................ ATCCAGCGTATCGAGCGTGTGGGTGTAATCCG 3991480 28 100.0 GTGTAATCCG ............................ CGTAGTAAAT ========== ====== ====== ====== ========== ============================ 12 28 32 TTTCTAAGCTGCCTACACGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [7,7] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [75,131] Score: 0/0.18 # # Final direction: R [0,1.55 Confidence: HIGH] >NC_014472 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 118325 20 100.0 70 NNNNNNNNNN ............TT.AC... TCCCAACGGTGAGCAGGGAATTCAAGGAGAGAAAGGCGACACAGGGGAAACCGGAGCACAAGGAATTCAG 118415 20 100.0 43 NNNNNNNNNN ........C...G....... CGAAAAAGGCGACACAGGTGAAACTGGAGCACAGGGAATACAA 118478 20 100.0 43 NNNNNNNNNN .................... TGAAAAAGGTGACACAGGTGAAACTGGAGCACAAGGTATTCAG 118541 20 100.0 43 NNNNNNNNNN ............G.A..... AATTCAGGGTGAAACCGGACCGCAAGGCGAAAAAGGCGACACA 118604 20 100.0 43 NNNNNNNNNN .................... TGAAAAAGGTGACACAGGTGAAACTGGAGCTCAGGGAATTCAG 118667 20 100.0 52 NNNNNNNNNN .................... CGAAAAAGGTGATACGGGTGAAACCGGACCGCAAGGCGAAAAAGGTGATACG 118739 20 100.0 70 NNNNNNNNNN ........C........... CGAAAAAGGTGATACGGGTGAAACCGGACCGCAAGGCGACACAGGTGAAACTGGAGCACAGGGAATACAA 118829 20 100.0 61 NNNNNNNNNN ...A..GTC........... TGAAAAAGGCGACACGGGTGAAACCGGATCACAGGGAATTCAGGGTGAAACCGGACCACAA 118910 20 100.0 61 NNNNNNNNNN ........C........... CGACACAGGGAAAACCGGACCGCAAGGTGACACAGGGGAAACTGGAGCACAGGGAATACAA 118991 20 100.0 88 NNNNNNNNNN ............TT.AC... TCCCAACGGTGAGCAGGGAATTCAAGGAGAGAAAGGCGAGACAGGAGAAACTGGAGACCAAGGTATTCAGGGTGAAACCGGACCACAA 119099 20 100.0 61 NNNNNNNNNN ........C...GTA..... TATTCAGGGTGAAACTGGAGCACAAGGAATTCAGGGTGAAACCGGACCGCAAGGTGAAAAA 119180 20 100.0 61 NNNNNNNNNN ........A...G.A..... GATCCAAGGTGAAACCGGACCGCAAGGCGACACAGGGGAAACCGGAGCACAAGGTATTCAG 119261 20 100.0 70 NNNNNNNNNN ............G.A..... AATTCAGGGTGAAACCGGACCGCAAGGTGAAAAAGGTGAAACAGGAGAAACTGGAGACCAAGGAATACAA 119351 20 100.0 70 NNNNNNNNNN ........C...G.A..G.. AATACAAGGTGAAACCGGAGCACAGGGAATCCAAGGTGAAGTCGGACCGCTAGGTGAAAAAGGTGATACA 119441 20 100.0 70 NNNNNNNNNN ..A.........GAC..... AATACAAGGGGAAACTGGATTGACAGGTCCCAACGGTGAGCAGGGAATTCAAGGAGAGAAAGGCGAGACA 119531 20 100.0 97 NNNNNNNNNN ..A.....C...G....... TATTCAGGGTGAAACCGGACCGCAAGGTGAAAAAGGTGATACAGGAGAAACTGGAGACCAAGGTATTCAGGGTGAAACTGGAGCACAAGGAATTCAG 119648 20 100.0 79 NNNNNNNNNN ........C........... CGAAAAAGGCGACACAGGTGAAACCGGACCGCAAGGCGAAAAAGGCGACACAGGTGAAACTGGAGCACAGGGAATACAA 119747 20 100.0 106 NNNNNNNNNN .................... TGAAAAAGGTGATACAGGGGAAACTGGAGACCAAGGAATACAAGGTGAAACTGGACCGCAAGGTGAAAAAGGTGACACAGGTGAAACTGGAGCTCAGGGAATTCAG 119873 20 100.0 70 NNNNNNNNNN ............G.A..... AATTCAGGGTGAAACCGGACCGCAAGGTGAAAAAGGTGAAACAGGAGAAACTGGAGACCAAGGAATACAA 119963 20 100.0 115 NNNNNNNNNN .................... TGAAAAAGGTGACACAGGGGAAACCGGAGCGCAGGGTATTCAGGGTGAAACTGGACTAACAGGGGAAACTGGAGCACAGGGAATACAAGGTGAAACCGGAGCACAGGGAATCCAA 120098 20 100.0 97 NNNNNNNNNN ......GTC........... TGAAACTGGACCGCTAGGTGAAAAAGGTGATACAGGAGAAACTGGAGACCAAGGAATACAAGGGGAAACTGGACCGCAAGGTGAAAAAGGCGACACG 120215 20 100.0 133 NNNNNNNNNN ........C...GTA..... GATTCAAGGTGAAACCGGACCGCAAGGCGAAAAAGGTGACACAGGGGAAACTGGAGCACAGGGAATACAAGGGGAAACTGGATTGACAGGTCCCAACGGTGAGCAGGGAATTCAAGGAGAGAAAGGCGAGACA 120368 20 100.0 97 NNNNNNNNNN ..A.....C...G....... TATTCAGGGTGAAACTGGAGCACAAGGAATTCAGGGTGAAACCGGACCGCAAGGTGAAAAAGGTGATACAGGAGAAACTGGAGACCAAGGTATTCAG 120485 20 100.0 133 NNNNNNNNNN ........C........... CGAAAAAGGCGACACGGGGGAAACCGGAGCACAAGGTATTCAGGGTGAAACTGGAGCACAAGGAATTCAGGGTGAAACCGGACCGCAAGGTGAAAAAGGTGATACAGGAGAAACTGGAGACCAAGGAATACAA 120638 20 100.0 124 NNNNNNNNNN ......GTC........... CGAAAAAGGCGACACGGGTGAAACTGGAGCACAGGGAATTCAGGGGGAAACCGGAGCGCAGGGAATACAAGGTGAAGTCGGACCGCAAGGCGACACAGGGGAAACCGGAGCAACAGGACCGCAA 120782 20 100.0 142 NNNNNNNNNN ........C...G....... TGAAAAAGGCGATACAGGAGAAACTGGAGCACAGGGAATACAAGGGGAAACCGGACCGCAAGGCGAAAAAGGTGACACTGGGGAAACTGGAGCTCAGGGAATCCAAGGCGAAACTGGACCGCAAGGTGAAAAAGGTGACACT 120944 20 100.0 151 NNNNNNNNNN ..G.....C........... TATTCAGGGTGAAACTGGACTGACAGGGGAAACCGGAGCACAAGGGATTCAAGGTGAAACCGGACCGCAAGGTGAAAAAGGTGACACAGGTGAAACCGGAGCACAGGGAATCCAAGGAGAAGTCGGGCTGCAAGGCGAAAAAGGTGATACG 121115 20 100.0 1 NNNNNNNNNN ..A.....C...G....G.. NNNNNNNNNN ========== ====== ====== ====== ========== ==================== 28 20 83 GGTGAAACTGGACCGCAAGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [14-24] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [832,478] Score: 0/0.18 # # Final direction: F [0.78,0 Confidence: HIGH] >NC_014484 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 461101 32 100.0 38 NNNNNNNNNN ................................ TGTGACACGACTGACCTAGTAAAACAGCAACTTTTAGG 461171 32 100.0 36 NNNNNNNNNN ................................ ACGACAAACTCTATGCGGCCATCCTCCTCTCTGCAG 461239 32 100.0 37 NNNNNNNNNN ................................ ATGATTTGAGACAGGGAATTGAGTATACCGCAAAATT 461308 32 100.0 35 NNNNNNNNNN ................................ ATCTTGATCCGACTAATTTTGAGTTGCCTCAACAA 461375 32 100.0 35 NNNNNNNNNN ................................ AATGATATTCTGAGTGCTGGTCTTAGGATTGTAGC 461442 32 100.0 34 NNNNNNNNNN ................................ CAGCAGGGGCAAGCGTCTGCACAATTACTATGAG 461508 32 100.0 35 NNNNNNNNNN ................................ AAATGGATGTCGCCTGACAGCGATGGCTTTGATGA 461575 32 100.0 37 NNNNNNNNNN ................................ CCCCCACCGGGGATGATGAAGCGTTCCCAGCCCCCGC 461644 32 100.0 35 NNNNNNNNNN ................................ AATTGCCTCACCTGCCTCACCCTTATTGGCTGTAC 461711 32 100.0 34 NNNNNNNNNN ................................ ACGCCCTCCAGAAGGAACCCCGGGTGCTTCTTCC 461777 32 100.0 35 NNNNNNNNNN ................................ ATCTTGATCCGACTAATTTTGAGTTGCCTCAACAA 461844 32 100.0 36 NNNNNNNNNN ................................ TCCTTATGGACACTAAAACAGGTGATTACTTTTTAC 461912 32 100.0 35 NNNNNNNNNN ................................ CATTGGATCCCTCCATATGCGTGATGTGTGATCTA 461979 32 100.0 39 NNNNNNNNNN ................................ CATCTCTCTTCTCGCTTCCATTGGATTACCTCCATCTTA 462050 32 100.0 37 NNNNNNNNNN ................................ AAACCACAAAAGAATATAAAACAATACAGGCAGTGAG 462119 32 100.0 36 NNNNNNNNNN ................................ CTTGGGGGTTTTTGTTTCTTACAGCCGGCAAAACAC 462187 32 100.0 36 NNNNNNNNNN ................................ GTGTAAATATTTAGACTAGTTTTCATTCCTGCTTGG 462255 32 100.0 37 NNNNNNNNNN ................................ CGCGGCGGATATCGCGCAATTGTCGGTGCTGTCGTGA 462324 32 100.0 36 NNNNNNNNNN ................................ ATTATAGTAGCGGCGGCAAGACACGCGGCACTGACT 462392 32 100.0 36 NNNNNNNNNN ................................ AGCCAACCTCTCCTGCCAGTCTGGCATCAATATCTC 462460 32 100.0 1 NNNNNNNNNN ................................ NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 21 32 35 GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.50,-7.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [61.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [172,127] Score: 0/0.18 # # Final direction: F [4.77,0.74 Confidence: HIGH] >NC_014500 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1728693 32 100.0 34 NNNNNNNNNN CAA.GCGATGT........C............ ATTTCGTCAGCAATCGAGACATCCTCACGGAGCT 1728759 32 100.0 34 NNNNNNNNNN ...................C............ AACCCGAGCCGCAGATACAAAAACCGGACTGGAT 1728825 32 100.0 34 NNNNNNNNNN ................................ GGACCTGGGGCGCGCAACCCGGCGCTTCTCTGTT 1728891 32 100.0 32 NNNNNNNNNN ...................C..........CG ATGGGTCCGTCAACATCATCAAACATTGTCGG 1728955 32 100.0 34 NNNNNNNNNN ...........G..A....C............ TGATGTATTCGGCGGTCACGACGGATGCCGCCGG 1729021 32 100.0 36 NNNNNNNNNN ................................ CTGCTACCTGCACCGCACCCTTCTTGACGGCGACAA 1729089 32 100.0 33 NNNNNNNNNN ...................C............ TGACGCTGTTATTGAGTCTGTGTTTAACGAGCT 1729154 32 100.0 34 NNNNNNNNNN ................................ GCGTCTACGTCGGCGTGACCAGATTATTGCATCG 1729220 32 100.0 33 NNNNNNNNNN ...................C............ AATCAGGTCGTAGCGCTGGTTGTTCACCCAGTA 1729285 32 100.0 33 NNNNNNNNNN ................................ GCCTCCGGCCAGTGCTCATCCCAGCGATCGACG 1729350 32 100.0 35 NNNNNNNNNN ................................ GGCGGCGATGCCGGGTATCTCATTACCAACATCCT 1729417 32 100.0 33 NNNNNNNNNN ................................ CCGTTATCTCATCGCGGCCGACCAGGCTTGACT 1729482 32 100.0 33 NNNNNNNNNN ................................ GTCGCAAGGGCGCTGGTGCGCGCAAATCTGCCG 1729547 32 100.0 33 NNNNNNNNNN ................................ CTTAATGCGCTGAGCAGTATCGTGAGCAAAATC 1729612 32 100.0 34 NNNNNNNNNN ................................ TGGCATAGCTGTGACTGCGGTCGCTATCTAAGGG 1729678 32 100.0 34 NNNNNNNNNN ................................ GAGCGCCCCAGCTGTTCCGCCTCGCCATACTGGT 1729744 32 100.0 35 NNNNNNNNNN ................................ ACCCCGACAGTGTTAGGGTGATCACTATAATCAGA 1729811 32 100.0 34 NNNNNNNNNN ................................ GATCCAACCCCATACGGTTAGCCACCATCGATGA 1729877 32 100.0 37 NNNNNNNNNN ................................ GACAGTCCGTGCGCAGGCGTTCGACTATTTCCTACGG 1729946 32 100.0 34 NNNNNNNNNN ................................ CACGCTGCGCAAAAAACAAATATTGCTATATCTG 1730012 32 100.0 34 NNNNNNNNNN ................................ TAGTAGTTGTAGCCATTTAAGTCCCCTCACATAT 1730078 32 100.0 34 NNNNNNNNNN ................................ TGTATCTAGTGTTATCTTTAACTTCATTTTTTAT 1730144 32 100.0 34 NNNNNNNNNN ................................ CAGCTACGTTGGGGCGATCAGCAAACGTGATCGA 1730210 32 100.0 34 NNNNNNNNNN ................................ CCTTTTTACGGTCTGCATCCCCGTCGCGGCAGCA 1730276 32 100.0 34 NNNNNNNNNN ................................ GACCTGCCGTTGGTAGCCCAGCGGATGAATAGAT 1730342 32 100.0 34 NNNNNNNNNN ................................ CGATCATGACCTGGTGTATCGGGAACGTGGTCGG 1730408 32 100.0 1 NNNNNNNNNN ................................ NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 27 32 33 GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [5,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.40,-4.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [18,182] Score: 0.18/0.18 # # Final direction: R [0.37,5.46 Confidence: HIGH] >NC_014501 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================== ====== 1837027 26 100.0 19 NNNNNNNNNN CGGCT..GA.TATCC..A........ TCGGTTCCGAGGGCGTTCA 1837072 26 100.0 19 NNNNNNNNNN .......................... CCGACGAGGATTGCGTTCA 1837117 26 100.0 19 NNNNNNNNNN .......................... TCGGTTTCGAGGGCGTTCA 1837162 26 100.0 19 NNNNNNNNNN .......................... CCGACGAGGATTGCGTTCA 1837207 26 100.0 1 NNNNNNNNNN .................CCAT.G.GA NNNNNNNNNN ========== ====== ====== ====== ========== ========================== 5 26 19 GATTGAGATTCTGTATCGTTATAATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:69.23%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [13-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [66,959] Score: 0.18/0.18 # # Final direction: R [0,0.59 Confidence: HIGH] >NC_014532 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 126711 28 100.0 32 NNNNNNNNNN ............................ TCCCGGCGGACGGAAAGCTTGGCAGACCAGCG 126771 28 100.0 32 NNNNNNNNNN ............................ AAGGCATAAAGATGAATACATTGAGCTCCCAT 126831 28 100.0 32 NNNNNNNNNN ............................ CAGTGCAGTTGCGAGATCTGTTTGCCATCGTT 126891 28 100.0 32 NNNNNNNNNN ............................ GTAAGCGCCGCATGCTGTGGGCGTCACGCCCT 126951 28 100.0 32 NNNNNNNNNN ............................ TTGCGTCTCGAAGTCCTCAAAGCGCGTAGCAT 127011 28 100.0 32 NNNNNNNNNN ............................ ACATTGCAGCCGTGACCATTCTTGCTGTGATC 127071 28 100.0 32 NNNNNNNNNN ............................ CAGCCGTCCTGGCTGTAGTCGCTCAGTTGGCA 127131 28 100.0 1 NNNNNNNNNN ........................CTCC NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 8 28 32 GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [60.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [704,1060] Score: 0/0.18 # # Final direction: F [1.42,0 Confidence: HIGH] >NC_014533 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 21043 36 100.0 36 GTGGGCAGCC .................................... AAGGATTTGGTATCGATTTCTCATGTCCTCAATAGG 21115 36 100.0 44 CCTCAATAGG .................................... TCAATTATTTACTTACATTCACTTGTATCTATATTATGACTGAA 21195 36 100.0 38 TATGACTGAA .................................... TATATTTTCAGCACCTGGCAATACCTTTAAGTTAGCAG 21269 36 100.0 38 AAGTTAGCAG .................................... AAATCTACTCTAATTTCTGTGGGGATTGGAGTCACTAT 21343 36 100.0 38 GAGTCACTAT .................................... CGATCACCTCGCTGTTCGGGGACTCCGCCAAAGACCTC 21417 36 100.0 38 CAAAGACCTC .................................... AGGTTCGAGAAGCCCTTCTCCTCCATCCAGAGGGCGTA 21491 36 97.2 42 AGAGGGCGTA G................................... AGGAACTCGGTCGCCCCCAGCTCGTCCCTGATCTCGAACCAC 21569 36 100.0 40 CTCGAACCAC .................................... CCGATGGCGGCATCGTGATGCGGGAGGTCGGCGGGTCGAA 21645 36 100.0 42 GCGGGTCGAA .................................... GCTTAATTATAAGCTTTCGAGTCAGGTTAACTTGATATAGAC 21723 36 100.0 37 TGATATAGAC .................................... GCAGTTTGAACTCCAGTCACCCCAACTACCTGGAATA 21796 36 100.0 42 ACCTGGAATA .................................... GTTGCGCACGGTGACCGGGACCAGCTCGGCGGCCCGTTGCCC 21874 36 100.0 36 CCCGTTGCCC .................................... GAGTACCTCTGTTACTATGGCAATTCTTCCTTTTCT 21946 36 100.0 43 TTCCTTTTCT .................................... AAGCATTTTTTCCCTCTACCACCTTAAGAACACCACTTGTGTA 22025 36 100.0 38 CACTTGTGTA .................................... TATGTCACCCATGCCAATTCACCCTATTATTACTTGTG 22099 36 100.0 38 ATTACTTGTG .................................... AGGTTCTCCTAGGAATTCATTCTTTTTAAAATTATTTA 22173 36 100.0 40 AAATTATTTA .................................... CTTTCTGCCTTGCCAGAGTAAAAGTGTGTACTCTTTTTCT 22249 36 97.2 36 CTCTTTTTCT ......................A............. TTTCTGTAATCCTTTCCCCGCCGCCTGTCCAACATC 22321 36 100.0 37 GTCCAACATC .................................... CGCCGCCGACGTGAACGAACGCGCGATCTTCACGGAG 22394 36 100.0 41 CTTCACGGAG .................................... CGATCTTTACATTCGCGGTTGAATGACGGCAGAAAAACTCA 22471 36 100.0 38 GAAAAACTCA .................................... TGGAGGAAATAGACAGCGATGGAAGGCGGTATAAAATT 22545 36 100.0 37 GTATAAAATT .................................... ATTGAATCGCTAGAACGCCCTTCCTGTCTCCATTCTC 22618 36 100.0 37 CTCCATTCTC .................................... GTCCTTAAACGACTTAAGGACTTTAGCCAGTTCTTAC 22691 36 100.0 40 CAGTTCTTAC .................................... TTTCGTTTTACTTATTCATACGATATTTGCAACAATATCC 22767 36 100.0 39 AACAATATCC .................................... AATAATTAAAACATTTTGATGCTCGTTACAAAGAGCTAA 22842 36 100.0 41 AAAGAGCTAA .................................... AACTCCTTCGCGCGCTTTGCCGTGCCGCCCGTCGCCGCGTT 22919 36 100.0 38 TCGCCGCGTT .................................... GCATTCTTAACAAATGCTCTAATTTTCTGCAATCTGAT 22993 36 100.0 35 GCAATCTGAT .................................... AAGTAATCATCTGGCTTTTGATTATGGAATCTCCG 23064 36 100.0 39 GGAATCTCCG .................................... CGGGGTTTACAAAAAGGTTGGCATTTACCTTGATCCGCC 23139 36 100.0 39 TTGATCCGCC .................................... GGCGCGAGCGACCGAGGACATCGGCCAGCAGATCCGGGC 23214 36 100.0 AGATCCGGGC .................................... TATTTGTATT ========== ====== ====== ====== ========== ==================================== 30 36 38 CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.80,-4.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [638,2442] Score: 0.18/0.18 # # Final direction: R [0.37,0.86 Confidence: MEDIUM] >NC_014533 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 44755 37 100.0 42 ATTAAAGAAA ..................................... TAGAAAGGGCTTTGTTAAGGCTTGAAAAAATAGAAAATTTTT 44834 37 100.0 37 GAAAATTTTT ..................................... AACGGCAAACTTAAAACTGTTGTTGACAACAATGAGT 44908 37 100.0 36 AACAATGAGT ..................................... AGTCGATATTGAAACAAATATCAATCGATTAGCGTT 44981 37 100.0 34 GATTAGCGTT ..................................... CCTAATTATCCTGGCAAAATGGACGGAAGTCTTA 45052 37 100.0 35 GGAAGTCTTA ..................................... TTTCCATTAACCGTCCTCGATGGGAAGAACTTTAT 45124 37 100.0 34 AGAACTTTAT ..................................... GTATCGTCCTTTGTTTTAACATTTAACTTATAGC 45195 37 100.0 36 AACTTATAGC ..................................... TGTTGCATCTTATCTGGTTCCGTTGGTTTGTTTTGT 45268 37 100.0 36 TTTGTTTTGT ..................................... ACAATAAGAATTCAGATAATTCAGCGAAATATCTAT 45341 37 100.0 36 AAATATCTAT ..................................... GAAGGATCAATAGGACTACCAACATTAAATTTAGAA 45414 37 100.0 37 AAATTTAGAA ..................................... CTATAGGAGGATCAGGTGTTAAAACAAAAATTCTCGG 45488 37 100.0 35 AAATTCTCGG ..................................... TTTGACTCTTCTTCTTTGTCTTGACAAATATATTT 45560 37 100.0 34 AAATATATTT ..................................... CCGGACATTGACTATAAGGTAACACAATTATTAT 45631 37 100.0 33 CAATTATTAT ..................................... CGCTCATAGCTCAAAATTCGTAAGAACAGTTTC 45701 37 100.0 35 GAACAGTTTC ..................................... CATCAATTATAAACAAATGATAGACGATTACTTAT 45773 37 100.0 35 GATTACTTAT ..................................... TACCTATTTCTAGTTTAGATATCAAGTTGTTAACA 45845 37 100.0 37 GTTGTTAACA ..................................... ATAGATGAATTAATACTACGTGACAGTATTCCGTTAA 45919 37 100.0 33 ATTCCGTTAA ..................................... ACAAATCCGCAGCATAACTACACCATTTTGTTA 45989 37 100.0 37 CATTTTGTTA ..................................... CCCCGCGAAATGGGGCTAAAAAAGCCTCTAAAGGGTC 46063 37 100.0 34 CTAAAGGGTC ..................................... TGGCAATCCAAATTCAGGACCATTTGAAGCTGGA 46134 37 100.0 34 TGAAGCTGGA ..................................... TAAACGATTGTGTTCTAGTTTCAACGGATACAAT 46205 37 100.0 35 CGGATACAAT ..................................... CCTGATCCTCCTATAGAATGGCTAAGATGTAAATT 46277 37 100.0 36 GATGTAAATT ..................................... TAACATCTAGTAATAAAAGTGGCGTTAATTTATTAG 46350 37 100.0 38 AATTTATTAG ..................................... TTGCAAGTTTGTGTTGTAAACGATTGCACAGTAACATC 46425 37 100.0 CAGTAACATC ..................................... GCTGCCAGGC ========== ====== ====== ====== ========== ===================================== 24 37 35 GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.40,-8.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [203,244] Score: 0/0.18 # # Final direction: R [0.27,4.87 Confidence: HIGH] >NC_014533 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 487679 36 100.0 39 TAAAATCTTT .................................... GCTATTTGGGGGGCTGAATCTCAAGCTCCTCAATGATAG 487754 36 100.0 42 TCAATGATAG .................................... GTTTTGCCATAACAGATAAACTCTTTGAAAGGAATCAAGGGG 487832 36 100.0 41 AATCAAGGGG .................................... TTCAGAACAAATTTAATGGTTTAAAAAATTCAATCATCAAA 487909 36 100.0 36 AATCATCAAA .................................... AATATATGTTAAGCGAGCTTGCAACGCTTATGAACT 487981 36 100.0 39 CTTATGAACT .................................... GTAATTTTCAGGAGGGCTTACACAGAGTTTACTAACCCT 488056 36 100.0 36 TACTAACCCT .................................... CTCTAACAGCGTCGCCGATTTCTTGTTGCTGTTCTT 488128 36 100.0 39 TGCTGTTCTT .................................... ATTATGATGTAGCCAAATGCGGAGCTACTTTAACTTGGA 488203 36 100.0 37 TTAACTTGGA .................................... TAGAGCCAAATCAGCAATGATAAAGCATCCATCACCA 488276 36 100.0 40 TCCATCACCA .................................... ACCACTCCTAGAGGAAAGTATAAACAAGACGACGATCCCT 488352 36 100.0 36 GACGATCCCT .................................... TTTTAAAAAAAAGTGCAGTAAACTAAAGCTATTGGT 488424 36 100.0 40 AGCTATTGGT .................................... CTGCATATTCCTCCCACCCACAACGAAGCAGACCAGAGTG 488500 36 100.0 42 GACCAGAGTG .................................... AATCTATTAGCTAATCCTCATGTAACTGTTGTTATGATTCTC 488578 36 100.0 42 TATGATTCTC .................................... TGGTGACATCATCTACAACAAGACGAAGATTGATATCCTTCT 488656 36 100.0 ATATCCTTCT .................................... ATTGATGGGC ========== ====== ====== ====== ========== ==================================== 14 36 39 GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.40,-5.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [122,501] Score: 0.18/0.18 # # Final direction: R [0.27,0.55 Confidence: MEDIUM] >NC_014533 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 841042 36 100.0 42 TAGAATTATC .................................... AGGTGCAAAAATGAATGAAGAAAAAGACAAGTATTTTATTTA 841120 36 100.0 38 ATTTTATTTA .................................... TTTTATATAGTTATGGAAAAGATCAAAAATTATATAGA 841194 36 100.0 35 ATTATATAGA .................................... AAATACTACTGATTCTGAAAGAAGAAAACAATTAA 841265 36 100.0 38 AAACAATTAA .................................... GCCAAAAAATGTAGTGGCCGAATCGCGCCAGTTGACGG 841339 36 100.0 37 CAGTTGACGG .................................... GGATCAAACCAGACGCGAAGAATTCGACCGCAAGCAA 841412 36 100.0 39 CCGCAAGCAA .................................... AAACAAATTAATTCTGAATAATCAAGCTTTTCCATGTTC 841487 36 100.0 39 TTCCATGTTC .................................... TTTTGAAGGATAATGAATTATTGCTTTTTCCATTTGAGG 841562 36 100.0 35 CCATTTGAGG .................................... TTTCTATTTATTACCTATTATCCTTTTAATAATCC 841633 36 100.0 38 TTAATAATCC .................................... ATTTATGGCTTAACTCCAAGCTCGGGAACAGTTCTCAC 841707 36 100.0 41 CAGTTCTCAC .................................... AAATTTACTGATATCTGATAAAAAAGTACCAATTTCCGTGA 841784 36 100.0 37 ATTTCCGTGA .................................... AGAAGTCAGTCGAACAGTTCAAGAAGCCTATAAAAGA 841857 36 100.0 37 CTATAAAAGA .................................... TCTAAATACCAAAGCTATAAAAATAACAAAGGGAAGA 841930 36 100.0 AAAGGGAAGA .................................... GGCTACCTTC ========== ====== ====== ====== ========== ==================================== 13 36 38 GTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.20,-5.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [80.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [432,278] Score: 0/0.18 # # Final direction: R [0.27,0.37 Confidence: LOW] >NC_014533 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 488727 37 100.0 45 CCCCCTGAAT ..................................... AGTCCTAATAATCGCAGAGACAACAAAATCAATGTTAGTCGCGGA 488809 37 97.3 39 TAGTCGCGGA G.................................... TAGAAGATTTAGATCCGCTTGAGAATTTGGAAGCCGTTT 488885 37 100.0 35 GAAGCCGTTT ..................................... GGACAGGTGGCTCTCGTCTTTAAGCTCAATGGTCG 488957 37 100.0 TCAATGGTCG ..................................... GGCTGCCCACA ========== ====== ====== ====== ========== ===================================== 4 37 39 TGTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.16%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.40,-5.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [55.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1170,199] Score: 0.18/0.18 # # Final direction: R [0.45,0.78 Confidence: LOW] >NC_014534 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 236763 35 100.0 33 AGAAGGTAGC ................................... ACTGTTTTTACGTGGCGCTCAGAGTACGCAGAT 236831 35 100.0 38 GTACGCAGAT ................................... TTGCCATTCCTGGCAGTGTGTGAACATATTCCTGCAAA 236904 35 100.0 38 TTCCTGCAAA ................................... AGCATTAAGTGCCTCTATTTGAGAGGCTTCTAGAAACA 236977 35 100.0 TCTAGAAACA ................................... TGTGCAGACTGCATAGCCACATATAACACCCTATTATTTAATT ========== ====== ====== ====== ========== =================================== 4 35 36 CTTTTCTCTTAGGAGAAAACTAACAGAATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.71%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.00,-3.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [265,304] Score: 0/0.18 # # Final direction: R [0,0.37 Confidence: MEDIUM] >NC_014533 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 846786 35 100.0 36 NNNNNNNNNN T.A.TT.A.TA........................ CATTCAAGTAGAAAAACAGGAACTATGGAAACATTT 846857 35 100.0 34 NNNNNNNNNN ................................... CCTTATTATTTGGGGGACGGAAGTAACTTTATGT 846926 35 100.0 38 NNNNNNNNNN .........G......................... CTTATGAACAGCTTGCTCAACGTGCTGGTCTGATTTAA 846999 35 100.0 37 NNNNNNNNNN ................................... TGGTGCTGAATTAGCCGCATCGTTTTCGGGCGGGATT 847071 35 100.0 35 NNNNNNNNNN ................................... GGATGAAAAAATCGAACGAGCATTTGAATTATACA 847141 35 100.0 39 NNNNNNNNNN ................................... CCCCTTCAATATGCAGATGTTGAAGTTCAAGGACAGGCT 847215 35 100.0 39 NNNNNNNNNN ................................... AACATGGGAAACCTGGCAAGGTTTTGTAGCAATAAGGCT 847289 35 100.0 38 NNNNNNNNNN ................................... CAGCGACGAAAAATGGCAAAAACTAGACGAATAAAATG 847362 35 100.0 34 NNNNNNNNNN ................................... CGCAATTCCTAGGGATAGCAGTAGCTGTACTATT 847431 35 100.0 37 NNNNNNNNNN ......C............................ CTTTAGCGCAGAACTTTGGTTTCAACCAAGGAACAAA 847503 35 100.0 32 NNNNNNNNNN ................................... ATATAAACCAATTCACGAGGGCCATTAGAAGA 847570 35 100.0 41 NNNNNNNNNN ................................... TTTAAAAATTATCTAATAGACTATGTAGGGAAGGTAAAATC 847646 35 100.0 37 NNNNNNNNNN ................................... TTCGGTTAAACACTGAACGTGTCAATCGGGATCTAAC 847718 35 100.0 41 NNNNNNNNNN ................................... ACTCCAACTATGAGGAAATAATCTCGCCCTATCTTGAGACA 847794 35 100.0 39 NNNNNNNNNN ................................... TCTACTTATTCAACGAGATCTTTGTTGACCCATATCTTC 847868 35 100.0 35 NNNNNNNNNN ................................... ATCGTTCAGAAATCTTTTACAATATCAACACAAAC 847938 35 100.0 37 NNNNNNNNNN ................................... TTTTATGTATTTTTTGGGGGGGAGGCTGATCTTTGAA 848010 35 100.0 34 NNNNNNNNNN ................................... CGTTACTGGTTTTCTCAAGAATCAGTAGATGATG 848079 35 100.0 34 NNNNNNNNNN ................................... CAGTGAAGCAGATAAACAGCTTGTTTATCGTCAA 848148 35 100.0 39 NNNNNNNNNN ................................... CATCAAAAAGATAGCCAGTTGCTTGAATGGCACGCTAAA 848222 35 100.0 40 NNNNNNNNNN ................................... TATCCTGATGTATTTTCTTGCGGGGTGCATTTTCAATGCA 848297 35 100.0 37 NNNNNNNNNN ................................... TGTTATAAATACAAACGGACGGGTTACATTTGAAACA 848369 35 100.0 36 NNNNNNNNNN ................................... TCGTGGTACCAGTTATAACCCTGCCCGGGTTCAATA 848440 35 100.0 35 NNNNNNNNNN ................................... CGGTGACGACGGTATCGATATTATCGATGCTACGC 848510 35 100.0 36 NNNNNNNNNN ................................... GAGTATCGAAACGGAGGGATGGCATCAGTCACACAA 848581 35 100.0 35 NNNNNNNNNN ................................... CGTTTAATGCAAATTTCCCAAGCTACTGCACCCAG 848651 35 100.0 35 NNNNNNNNNN ................................... ACGTACGATAATAGAATCCTCAAATGAGGAGGAAG 848721 35 100.0 36 NNNNNNNNNN ................................... TATGCCACTTTACTTCCTGTGGCTGCAAGAAAAACA 848792 35 100.0 34 NNNNNNNNNN ................................... ATTTTTCCAAAGTTTCCAAAATGATGCGCAGATA 848861 35 100.0 40 NNNNNNNNNN ................................... TATAACACTCCCATAAGAGTGTTGAGTAGTGTCGGTAGCT 848936 35 100.0 34 NNNNNNNNNN ................................... TAGTCAAGATGGCAAGTTCACTGTAAATTTCAGA 849005 35 100.0 1 NNNNNNNNNN ................................... NNNNNNNNNN ========== ====== ====== ====== ========== =================================== 32 35 36 GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.71%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.10,-2.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [81.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [234,265] Score: 0/0.18 # # Final direction: F [0.64,0.41 Confidence: LOW] >NC_014534 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 241869 36 100.0 36 GAAGGTAGCC .................................... TTCATCTTCTGGTATCTCCTCTATCCTTAGCATCTG 241941 36 100.0 41 TTAGCATCTG .................................... TTATAGTTCCCTCCACTTATTAATGCCATCTCTCCTGTCAA 242018 36 100.0 38 CTCCTGTCAA .................................... CCTGACAAGCAAGCAACGATATCTCCTTTGATTGTTTG 242092 36 100.0 38 TGATTGTTTG .................................... TCCACAGAAGAAGGTAAAGTCTTCCTGCGCCCTCTTAT 242166 36 100.0 38 GCCCTCTTAT .................................... CCAGTATTCAAATTGGAGGTTCTCTAGCTCCAAAATAA 242240 36 100.0 38 TCCAAAATAA .................................... TCCTTGGCAGAATCTTGGCGGCTTATAGAATCAAAAGT 242314 36 94.4 AATCAAAAGT T...............A................... GATAATTCTAT ========== ====== ====== ====== ========== ==================================== 7 36 38 CTTTTCCTCTTAGGAGGAAGCTAATAGAATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.30,-4.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [50.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [278,236] Score: 0/0.18 # # Final direction: F [0.78,0.27 Confidence: MEDIUM] >NC_014537 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 1084987 25 100.0 51 CAATGCACCG ......................... ATGTTGAGTGCACCTAACTCCCTGAGTAATTTAATCGCCTCGCTTGTATTG 1085063 25 100.0 45 GCTTGTATTG ......................... TTCATTATCGAAATGCCATAATCTTCCGAATCCTGCTATTTGAGA 1085133 25 100.0 50 CTATTTGAGA ......................... ATTATCATTGATATTAGGTTTCCGTCTCTTTCGATGCTCTCGATTTCGTA 1085208 25 100.0 41 CGATTTCGTA ......................... TAATGAGACGTGAACCTGTTTGGGGGGATAATGATGGAGTT 1085274 25 100.0 44 TGATGGAGTT ......................... CCGTTGCAAAACCTTCCTCCAGTGTTATGAACCGCGAAACACCA 1085343 25 100.0 42 CGAAACACCA ......................... AATAGGTCGTGCGGGCTTAATGACGTGAGTATTAGTGCGTGC 1085410 25 96.0 TAGTGCGTGC ....................A.... TGTGGACCCATTGATTAATGTCTGCTCAGCTATTTTGTTGCAATACT ========== ====== ====== ====== ========== ========================= 7 25 45 GAAGATTTCAATAGAATATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [356,168] Score: 0.18/0.18 # # Final direction: F [0.59,0 Confidence: HIGH] >NC_014537 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 1086729 25 100.0 48 TAACGTACCA ......................... TCTTCCTAAGAAGCAGTGCCACGCCGGTTGGCAAGTAGCTGTATGAGA 1086802 25 100.0 43 CTGTATGAGA ......................... ACTGTATGTTTATCTGCACGCCACCACCCTGCTGAGTACAGAG 1086870 25 100.0 48 GAGTACAGAG ......................... TCCTCAACTCCTTACCGCTGGCGTTGGGGAACATCACCCTAAGCAACG 1086943 25 100.0 47 CTAAGCAACG ......................... TGGATTTCGCCATAGTCGCCAGGCACCATTGGCGCTATCACCTCCTC 1087015 25 100.0 47 TCACCTCCTC ......................... GTGACGCCACTGAGCGGGGTCGTTAAGCCACTCCACACCATGGTCTT 1087087 25 96.0 48 CCATGGTCTT T........................ TTGAGTTCAGCGCTGAACGCCTTATCTCGATTTTAATGGACATCGTGG 1087160 25 96.0 40 GACATCGTGG ..............G.......... GGGGACCCGATTGGGCTTGGGCACGCAATGTACTCCTCGA 1087225 25 100.0 44 TACTCCTCGA ......................... ACTTCCCGGGCATGGAGTCGGTCATCGCGAGGGAACTGCCCGAG 1087294 25 100.0 45 ACTGCCCGAG ......................... ATTAGGATCGGTAGTAGGGACACCACGATAGACGGCTCACTAAGT 1087364 25 96.0 CTCACTAAGT ...............G......... GTCTTTGTCG ========== ====== ====== ====== ========== ========================= 10 25 45 GAAGATTTCAATAGAATATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [65.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [257,285] Score: 0/0.18 # # Final direction: F [0.68,0 Confidence: HIGH] >NC_014537 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 1102760 25 100.0 42 AAACGTACCG ......................... GAAAGGATCATGTGGGTTTTCCCTGTCAATCCCGTGATGTCG 1102827 25 100.0 47 CGTGATGTCG ......................... TCATTGTGAATTCCCATACCTGTGTAGCTGATGGTAATTCATATGCC 1102899 25 100.0 44 TTCATATGCC ......................... TAGATTTCTACACGGATAAGGGCGTGTTCGACACCACGAGTGAG 1102968 25 100.0 48 CACGAGTGAG ......................... TAGCCTGCCAGCCATTTACACCCTCTGCCTCTATTTTCATTTTTACCT 1103041 25 100.0 43 ATTTTTACCT ......................... AATAATAGCGCGGAAATTGTGGCTGTCCATGCCTTGCTGGTAA 1103109 25 100.0 49 TTGCTGGTAA ......................... GAATTTCATCTAAGAACAGTGGGGCCTGCATCTGATAAGTAGTAGCTAG 1103183 25 100.0 48 TAGTAGCTAG ......................... ACGATGCCTCTCGAGGGGGCTCAGGAGAGAATGGGGAGTTGAATGAGG 1103256 25 100.0 44 TTGAATGAGG ......................... CACGTATGTCGCAACGTCACCATCCCTGAAGCCACCCATAGCAG 1103325 25 100.0 CCCATAGCAG ......................... GAGCGATAAT ========== ====== ====== ====== ========== ========================= 9 25 45 GAAGATTTCAATAGAATATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [216,164] Score: 0/0.18 # # Final direction: NA [0,0 Confidence: NA] >NC_014537 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 1601217 25 100.0 41 NNNNNNNNNN ..ACTATGC.CTC..G....A.... TGGTTCGGTAAGTTCTTGATAACCACGGGCTTCGCAATGTT 1601283 25 100.0 46 NNNNNNNNNN ......................... TCTCGTACTCACACACATACTCGATCCTGGCACTCATGAATTCCTC 1601354 25 100.0 48 NNNNNNNNNN ......................... CTCACCACATTGAGGTCCCTGGCTCATTCATCGACATACCAAACAACG 1601427 25 100.0 45 NNNNNNNNNN ......................... CGTTCCGTTGTATATCCACACGTTGTAAACCGAGTTGTACGTGAA 1601497 25 100.0 47 NNNNNNNNNN ......................... TTGGAGTCATTTGTTTTGCCCGTACTGTCAACAGCTACACCGTTAGT 1601569 25 100.0 48 NNNNNNNNNN ......................... CTGAATACGTAGGTGCCTGGTGCCGTGAACTGAAGCCACTCGAAATAC 1601642 25 100.0 45 NNNNNNNNNN .......................C. AGCCTAGGCCTGTCTTGCCGCCGCCGACCGCGGTCGAGATAGTGA 1601712 25 100.0 53 NNNNNNNNNN ......................... GCCGGCCCAGACTCATGTTACTGCAAACTCGAGGGGATTGGGTGCACGCAGAT 1601790 25 100.0 46 NNNNNNNNNN ......................... AAAAACTTATAAATCAGTCCTGAGCAAAAACAATGTATGAAAGAAA 1601861 25 100.0 48 NNNNNNNNNN ......................... ATTCCTAATCACCTACACCTCAAATTCGCAGGTAATGGAATAACTTCG 1601934 25 100.0 48 NNNNNNNNNN ......................... TCGTTAAAAGATACGGGGCAGGAAATAATGACATTTGAAGAGGGATTA 1602007 25 100.0 48 NNNNNNNNNN ......................... GTGTCTAAAAATGACGATGCATGTGAGTGGTTTAAGGCGTGGTTGACA 1602080 25 100.0 46 NNNNNNNNNN ......................... TCAGTAGTCATTATGATGTACTGCCAGACGGCCATTCCCCTATTGT 1602151 25 100.0 44 NNNNNNNNNN ......................... TACTGTGAATGCGTTGAATGTCAACACAGCTACTTACCAGCAAA 1602220 25 100.0 46 NNNNNNNNNN ......................... AATACAATAATAAGAGTCCCTGCGGACCCTAACGGTAAGCCGACAG 1602291 25 100.0 45 NNNNNNNNNN ......................... AAAGATGGTGCCAGTATTGCCAGGCAATGAAATTCATGATGGTTT 1602361 25 100.0 42 NNNNNNNNNN ......................... TAAAGCAGTCTATCAAGCATTCCGTGATTTCCTTAAGGAAAG 1602428 25 100.0 48 NNNNNNNNNN ......................... TCTCTTATAGTAGGGTAGTTAGGTAGGGTAGGGTTGTGTGTGTGGGGT 1602501 25 100.0 46 NNNNNNNNNN ......................... TCGGTGGTGTTGAACCGTGTGGTGCGAAGTTAATTGAGGTTAGTCC 1602572 25 100.0 42 NNNNNNNNNN ......................... TCAACGGTATCGTGGAATTCAAGGTGTTCGGTAATCACCTCA 1602639 25 100.0 50 NNNNNNNNNN ......................... ATAAATCACCGTACTCAATGCATGAAACGACCTTGATGAAACCCATCACC 1602714 25 100.0 1 NNNNNNNNNN ......................... NNNNNNNNNN ========== ====== ====== ====== ========== ========================= 22 25 46 CCTTCTATTCTCTTTAGAGATTATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis suggestion: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [94,188] Score: 0/0.18 # # Final direction: R [0,0.41 Confidence: MEDIUM] >NC_014537 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 1610754 25 100.0 45 NNNNNNNNNN ......................... GTGCTGTTGATGATCCATGTGTAGCCCTGCCCACTTGATGTGATT 1610824 25 100.0 42 NNNNNNNNNN ......................... AGTTCCCCGTATAACCTAGCCAGGTCCTGGCGTTTATGACGC 1610891 25 100.0 46 NNNNNNNNNN ......................... ACTGCTAGTTTCCGCACAATGCCTAACACATACTACTACATCAATG 1610962 25 100.0 40 NNNNNNNNNN ......................... ATAAGTACTTTCCCAACCCAGGTGGTGTGTACTCTATCCA 1611027 25 100.0 45 NNNNNNNNNN ......................... TTGAGCCAGGCGATTGGGCTTGGGTACATGAATGGGACATTGGGG 1611097 25 100.0 43 NNNNNNNNNN ......................... CTGGCTTCTGTGTGGTTGCCACGTCCTTTGGTATGCCGATTGG 1611165 25 100.0 47 NNNNNNNNNN ......................... GTGATTTAGCACCATTGTGTCCATTCAGAAAATTCCTAAGTAAGTAT 1611237 25 100.0 48 NNNNNNNNNN ......................... CAGGATAGACAAGGGATTATTCGATGAACTTGACAAGGAAGCCATAAT 1611310 25 100.0 42 NNNNNNNNNN ......................... GCAGGGAGTATTTACATTGCGGACTTAGATGCTGACTTCAAA 1611377 25 100.0 44 NNNNNNNNNN ......................... ATCGATTCCCGTGAACACCAGGACGGCGTTAATGGCGAGTATGC 1611446 25 100.0 43 NNNNNNNNNN ......................... ACATAATCTATATAGATCGTCCGAGAAAACATTTTCAAACTCA 1611514 25 100.0 57 NNNNNNNNNN ......................... TGTTGACTCCCTTGAACCCTGGGATTGGACTCTGACATACTTGTATTAGAGCATTTG 1611596 25 100.0 47 NNNNNNNNNN ......................... GTAGATTATTGCGTCATTACTGCTGAACCCAGTGCCTGGGTTGAAAT 1611668 25 100.0 49 NNNNNNNNNN ......................... TGCTAAGCTCAGTACCTGTTTCCACAGTGGGTCGTAGACGAATAGGTTC 1611742 25 100.0 50 NNNNNNNNNN ......................... TCGACGCGACCTTCTCATAATCCGTCTGAGTCCTCGGTAGCGTCATGGGT 1611817 25 100.0 41 NNNNNNNNNN ......................... TGCTTGATAACTCCCTTACCTTGATTTCAACATTTTTCCCC 1611883 25 100.0 43 NNNNNNNNNN ......................... GATGAAGATGGGGAACATTGAACTTTGGCAGGTTGTGGATTAT 1611951 25 100.0 48 NNNNNNNNNN ......................... CGAATTAACAATGAACCTAATCCAGGAAGCCGTCTCCTCTAGGAGAGA 1612024 25 100.0 46 NNNNNNNNNN ......................... GTGGGTTGTGTCGCCTGGATTGTTGACTCCAATTGACTCACGCTAC 1612095 25 100.0 42 NNNNNNNNNN ......................... GGGAATTTCCTGCCAGCCACGTCGCCACCAGCCACATAAATG 1612162 25 100.0 48 NNNNNNNNNN ......................... AAAACAAAAACTGTTTACAATCAATCTACACCGTCTACACCGTTAAAG 1612235 25 100.0 49 NNNNNNNNNN ......................... CTTCTTCCCATCCCCACAGTTGAGTTCTAGAAGCTCATTCGACATATTC 1612309 25 100.0 43 NNNNNNNNNN ......................... ATTCCATACAGGCTTGGCTTTTGTCCTCCCATTCCTCTTTTTT 1612377 25 100.0 46 NNNNNNNNNN ......................... TTGAATAAAGTGACCTAAGCGTCTGTGATAGTGGACCGTAGCTAAT 1612448 25 100.0 51 NNNNNNNNNN ......................... GACATTGGTAAGGCATGCCGATACCTTGCAGAATTAAAAAATGCGTTGAAC 1612524 25 100.0 45 NNNNNNNNNN ......................... ATGAACATGAACCTACTGCGTACGTTTGCTGGTATGAATATCCAG 1612594 25 100.0 51 NNNNNNNNNN ......................... ATTCTTCAACCACCTCTGGGTAGTGAACCGCAATGCGGACTAACTGCTTAT 1612670 25 100.0 46 NNNNNNNNNN ......................... ATCCCAGTCCTTGAAGCATGCAAACCTATCGGAGACGTCTCAGTGA 1612741 25 100.0 42 NNNNNNNNNN ......................... CTGAAGTCCCTGGCGAGGAACCTAGCCAAGGAACTAAGGAGA 1612808 25 100.0 43 NNNNNNNNNN ......................... GCCAAACCGATGGTGGAACACCCATCGTGAACACGCCGTTCCT 1612876 25 100.0 42 NNNNNNNNNN ......................... GTTATGTACCCGGGCACGGTGAACCCGCTTGGCAATACGCCA 1612943 25 100.0 46 NNNNNNNNNN ......................... AGAAGCTATCCGTACTACTTCATTGCGCAGGTGCTTAGTTCATGAG 1613014 25 100.0 48 NNNNNNNNNN ......................... AATTCATGAACCTTCGTGGTGTGATAGTATTCACAAACGTGCCATTCA 1613087 25 100.0 1 NNNNNNNNNN ......T.................. NNNNNNNNNN ========== ====== ====== ====== ========== ========================= 34 25 45 GATATTCTCTAAAGAGAATAGAAGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [75.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [44,110] Score: 0.18/0.18 # # Final direction: F [0.68,0.18 Confidence: MEDIUM] >NC_014537 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 2060741 25 100.0 40 ATGATGCTAA ......................... TTGGGTTTTAACGCTGAATACGATACATGACGTTTTAATG 2060806 25 100.0 47 CGTTTTAATG ......................... GCGGGTCTAAGCAACACCGTGTTATCACCATTACTGGGCAGTGTGGC 2060878 25 100.0 49 GCAGTGTGGC ......................... TTGATAACGATTGACTTGATGCAGGCAATAACCGTTAACTCGACGACTG 2060952 25 100.0 52 TCGACGACTG ......................... AGGCTGAGATTTACGCGCCATGGGATGGCACGCGTTTTGTTACGTTAGAAGA 2061029 25 100.0 45 CGTTAGAAGA ......................... AATAAGGGTTTCAGCGGTTGAAGGGGTTTCGTATGAGTATGAGGT 2061099 25 100.0 46 AGTATGAGGT ......................... CAGGCGAATAAACCTGGCACTAACCCTAAGGAAACTACACAGGAAA 2061170 25 100.0 47 ACACAGGAAA ......................... ATGGCAGTCCACGAGGCTTATATTAATACCATCATTGCCAATAATCC 2061242 25 100.0 45 CCAATAATCC ......................... CTCGAGCTGGCTTACTGGTGGTGGCGGTAGTGACTTCGGCACGAG 2061312 25 100.0 47 TCGGCACGAG ......................... AACGAGGGTAGTGAATTCGAGGAGGGTATCATTATGATGCCCGAGAG 2061384 25 100.0 40 TGCCCGAGAG ......................... TACTGTGGTGTTTACCAGGGAATTTCATGTAGGGAGCTTG 2061449 25 100.0 41 AGGGAGCTTG ......................... GGCATGCAAATGGTTCTATGCGTGGTTGGGCATGGGTGACC 2061515 25 100.0 45 ATGGGTGACC ......................... CCTCCCTGCTGGTCACTCCCCACCACCAGGTAGGGTTAGACTAAT 2061585 25 100.0 45 TTAGACTAAT ......................... TTCTTCATCCATGATTTGCACTGAGGCAATAAAGTGTGGATTTCC 2061655 25 100.0 47 GTGGATTTCC ......................... GTGAAATTGTTTTAGTTGCTCAGGTTACAGAGAGCAACGTTGCTAGA 2061727 25 100.0 CGTTGCTAGA ......................... CGGTGCGTTG ========== ====== ====== ====== ========== ========================= 15 25 45 CTTTCAATATTCTATTGAAATCTTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [58.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [266,329] Score: 0/0.18 # # Final direction: R [0,0.27 Confidence: MEDIUM] >NC_014537 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 1946822 25 100.0 58 ATGCACCGCG ......................... AAGTACTGGAATGTACCAATTAGGTTTGGCGCTGTGAATTGTAGGTTAAATGTCGATG 1946905 25 96.0 44 AATGTCGATG ..G...................... TATGTATTCATCCGTCGTTATCAACCTTCGCATGATTGCAGACC 1946974 25 100.0 47 ATTGCAGACC ......................... TGCACAAATAAATTAATTGGGAGCCCAGTCACGAAGTTCCTACCAAT 1947046 25 100.0 41 TCCTACCAAT ......................... TTCCATGGCTTCTTCCATGAATAGCCAAAGCTCATTAATTG 1947112 25 100.0 48 TCATTAATTG ......................... CTCCTTCTTCATCCTCAACGTCCTGTCCCACACGTATATTGCGTCCCT 1947185 25 100.0 44 TTGCGTCCCT ......................... ATTACATATTAATATGCGTCGTGCCTCGTACATTAAATTTATGA 1947254 25 100.0 44 AAATTTATGA ......................... TCCAGTGTAGCGCTTGCCCTGTTAACTGGCACTGGAACGCCTAA 1947323 25 96.0 GAACGCCTAA .....A................... AAAGACCTTAA ========== ====== ====== ====== ========== ========================= 8 25 46 GAAGATTTCAATAGAATATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [1067,669] Score: 0/0.18 # # Final direction: F [0.41,0 Confidence: MEDIUM] >NC_014537 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 2188852 25 100.0 42 CAACGCACCG ......................... ATACCTGCATATGCCCTAAACCTAACACGGTCATGGTTATGA 2188919 25 100.0 47 ATGGTTATGA ......................... CTCTCGGGCATCATAATGATACCCTCCTCGAATTCACTACCCTCGTT 2188991 25 100.0 45 TACCCTCGTT ......................... CTCGTGCCGAAGTCACTACCGCCACCACCAGTAAGCCAGCTCGAG 2189061 25 100.0 46 CCAGCTCGAG ......................... CTATTGATGATTATCCTGTCCTCAAAGATCTTGGACATTTTGAGGG 2189132 25 100.0 47 ATTTTGAGGG ......................... TTCTTGAGCACCGTGATTGACGAGGGGTAGTAGGGCAGGTAGTACTT 2189204 25 100.0 49 GGTAGTACTT ......................... AGTACCTTGGCGATTGAGTCACCGAACATGGCATAACCCATGACCATCA 2189278 25 100.0 42 ATGACCATCA ......................... GTGATCCTCTACGTGAGTGGTGCCGGCGCCATCAAACCCGTC 2189345 25 100.0 45 CAAACCCGTC ......................... CTTCGTGAGTACAAGAACCAATGCCTCGCTTCCTTTTGTCAACGT 2189415 25 100.0 43 TTGTCAACGT ......................... AGTTCCTGTAACTTACTGGTCAGTGTTATGACTGCGTCTATTG 2189483 25 100.0 GCGTCTATTG ......................... TTGATGTAGT ========== ====== ====== ====== ========== ========================= 10 25 45 GAAGATTTCAATAGAATATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [331,190] Score: 0/0.18 # # Final direction: NA [0,0 Confidence: NA] >NC_014538 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2149255 29 100.0 38 CTAATTTTAA ............................. AAATTTTTGCAGGGGAGGAGACATAAAACGAAATGAAG 2149322 29 100.0 37 CGAAATGAAG ............................. CGTAACGCCTGATATTTTTCATATTGATTTTTTGTTG 2149388 29 100.0 37 TTTTTTGTTG ............................. GAGAGCTGTATTATCGAAGGAAAAAATACTTCAAAGG 2149454 29 100.0 37 ACTTCAAAGG ............................. ATTCTCCTACCTGATTTATCCCTTGAATTTGAATAGG 2149520 29 100.0 38 TTTGAATAGG ............................. CCACTCCCGCCCAAATTCAAAACCTCATTTTTTCCTTG 2149587 29 100.0 TTTTTCCTTG ............................. ACGTTAAAAA ========== ====== ====== ====== ========== ============================= 6 29 37 TTTCAATCCCTTATAGGTAAGCTAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.97%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [146,773] Score: 0.18/0.18 # # Final direction: R [0,5.05 Confidence: HIGH] >NC_014538 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2340565 30 100.0 36 GTTTTTGAAA .............................. TTAAAGGAGGAAGATAAAAATGATAACTTCTGTAAA 2340631 30 100.0 39 CTTCTGTAAA .............................. AAGGTATCAAAAATTATGCTTATTTTGCGCAATAGAGAA 2340700 30 100.0 37 CAATAGAGAA .............................. CAAGCCAAACAATATACGTTAAGTTTTATTTTGCTGA 2340767 30 100.0 36 ATTTTGCTGA .............................. ATCGGGCCGGTCAGGGAAGTGGAACGGTTGTAATTT 2340833 30 100.0 37 GTTGTAATTT .............................. TGGGGACACAATTTACGATTAGGGACACAAAAACACC 2340900 30 100.0 39 CAAAAACACC .............................. CTGTATAAGTTGCAACTCCACTATTATCAAGCAATCTAA 2340969 30 100.0 37 AGCAATCTAA .............................. TTGGTTTCGGGCTGAACAGGTAAAGGCGTTTTTGCAA 2341036 30 100.0 37 GTTTTTGCAA .............................. GATACATTTACACCAACGGTAAAAAACCTTTAAAAGG 2341103 30 100.0 CTTTAAAAGG .............................. TCTTCATGTT ========== ====== ====== ====== ========== ============================== 9 30 37 GTTTCAATTCCTTATAGGTAGGCTAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.70,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1511,393] Score: 0.18/0.18 # # Final direction: R [0.55,4.5 Confidence: HIGH] >NC_014538 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2342896 30 100.0 36 AGATTTTGGC .............................. CACATACAGGACATTCCCACACCCGCTCCGATAACT 2342962 30 100.0 38 TCCGATAACT .............................. AAGATTAGCTATTCTTCAACATCCACAGTATCCCTTCA 2343030 30 100.0 35 TATCCCTTCA .............................. GAAGAAGTTTTCTTTTATAGATTGTTAGTGGTTTG 2343095 30 100.0 35 TAGTGGTTTG .............................. GAAAGAAGATTTTCACAGCATGGCACTTAAAACAG 2343160 30 100.0 38 CTTAAAACAG .............................. TCTCAAGGCAACAGGTAGTACACCACAAACAGGAAACA 2343228 30 100.0 37 ACAGGAAACA .............................. CTGTGGTGACATGCTTTTTAAAGCTTCTGCCTCATTG 2343295 30 100.0 36 TGCCTCATTG .............................. TACAATGTTGCCCTTCTACTTGCAGCTCTAACACGG 2343361 30 100.0 37 TCTAACACGG .............................. GTAATGTGGATGGTATATTGTCATGGAGGTGGAGATA 2343428 30 100.0 36 GGTGGAGATA .............................. CCATTTCTATGCTTGCAATTATGCGGGCGAAGGAAA 2343494 30 100.0 37 GCGAAGGAAA .............................. CAGCGCCTAAAACCAAAATTACGTTTTGCATTGTAGG 2343561 30 100.0 35 GCATTGTAGG .............................. ATTTTGCATTCACCTTCTTCAATTTTCTTCTCTGA 2343626 30 100.0 38 TCTTCTCTGA .............................. TTCTCTGCTTATAACAGTCATTTTCTGTCATGAATTTT 2343694 30 100.0 37 CATGAATTTT .............................. AGCGCCATCATACTCGATTTCCTGCCGTATCACAAAA 2343761 30 100.0 37 TATCACAAAA .............................. AAGCAATCACCGGCAAAACCAACTGGTATGATGCACC 2343828 30 100.0 35 ATGATGCACC .............................. GAACAAGATGTACATGGAGCATATACCGATATCTA 2343893 30 100.0 36 CCGATATCTA .............................. TCCTTTTTCTTGCCATTAAAATCACTCCTAAATGTA 2343959 30 100.0 36 CCTAAATGTA .............................. CTAAAGTGTAGTTTGTATCTCTTACAATCGTTGCGG 2344025 30 100.0 34 ATCGTTGCGG .............................. ATTTTTTGAATTTGAAATTCACGAGTCAAAGGGT 2344089 30 100.0 36 GTCAAAGGGT .............................. GGGTTGTGCTTTAAAAAGTTTATGATTAACACTACA 2344155 30 100.0 36 TAACACTACA .............................. ATATAGGCCCTGAAATTCCTCTGGTAGTGCTTCTCT 2344221 30 100.0 35 GTGCTTCTCT .............................. CAAAAAGCGCAAGGGGAGCAACAACAAGAACCTAT 2344286 30 100.0 38 AAGAACCTAT .............................. GCGTCCACCTGTAAGTGCAAAAGAATGGGTGGAAGAAA 2344354 30 100.0 36 GTGGAAGAAA .............................. CCAGCGTGAGTCAATTTATTCCGTATTCAGTGCGGG 2344420 30 100.0 36 TCAGTGCGGG .............................. GTGAGGAGCGCCAAGAAGACGAGCAGGCGGTGCAAA 2344486 30 100.0 35 GCGGTGCAAA .............................. CATACAGTTCCCCGCAAAGAAGTAGCTCCAGCCTG 2344551 30 100.0 35 CTCCAGCCTG .............................. GCCGGGATGAATACACACACATCGGCGCCAGCCGA 2344616 30 100.0 36 CGCCAGCCGA .............................. GGCTAATAAAATGATTTTGCAAGCATTAAAAAGACA 2344682 30 100.0 36 TAAAAAGACA .............................. ATACTCCTTATTTGCCTGTCTATCATCCTTAAATCT 2344748 30 100.0 35 CCTTAAATCT .............................. CAACTCTGTGGATACACGTCAACCATGTTTGTTTT 2344813 30 100.0 37 TGTTTGTTTT .............................. CAACACATGAGAGTAGACGGAAACGATGATGATAGTC 2344880 30 100.0 35 GATGATAGTC .............................. CGGCAGGCCATATTGATGTTAGTAGCACATCTCTA 2344945 30 100.0 36 CACATCTCTA .............................. TATTTATATGCTCCTGTACGCATGGCGAGCTGAATA 2345011 30 100.0 36 GAGCTGAATA .............................. AAAGAAGAGCTTGAAAAGGAGGAGATGAATTCAGAA 2345077 30 100.0 36 GAATTCAGAA .............................. TCATAGATACCGAATACGTCAAAGTTCTTGAAGACT 2345143 30 100.0 38 CTTGAAGACT .............................. TTATAAAGCTCAACTACTTCTTTTGGTGTTATATTCAA 2345211 30 100.0 34 TTATATTCAA .............................. CTGGGGAAGTCTTTAATGAACCTGTGCAGGAATA 2345275 30 100.0 36 TGCAGGAATA .............................. CCCCCTTGGGTATTTCTACGTAACCGAGATTGAGCG 2345341 30 100.0 38 AGATTGAGCG .............................. TAGTCCCATGTTACCCATGCTCCAGATGCGGAATACTT 2345409 30 100.0 35 CGGAATACTT .............................. GCAGGCTTGGACACTCTTACAAGGTACTTTTACTC 2345474 30 100.0 37 ACTTTTACTC .............................. GAAGGTTGCCTGGGCTATGTGGACAATCCAGAAGGCA 2345541 30 100.0 36 CCAGAAGGCA .............................. GCGTAGTAGTTTACAATTACAAGTTTTAACTTCAAA 2345607 30 100.0 36 TAACTTCAAA .............................. GGAGTCTTGGAAAGGACTCCATTACTTCGAACTCGA 2345673 30 100.0 36 TCGAACTCGA .............................. CCATCACGGATGCACTAAAACCGGCTAAATTCAGCG 2345739 30 100.0 38 AAATTCAGCG .............................. TTAAAACGTTCTGGAACTGTTCTTGTACGCTATCCGCA 2345807 30 100.0 36 GCTATCCGCA .............................. GACATAGTATGGAACAAAAGGGTTTTAAGTTCGACG 2345873 30 100.0 37 AAGTTCGACG .............................. GCTGCTATGACTATCCCAACAGGGCCAGTTATTAGAG 2345940 30 100.0 38 GTTATTAGAG .............................. CCATCCATTTTACAAAGCAGTATATATCACAAAATAGA 2346008 30 100.0 36 ACAAAATAGA .............................. TAGGCAATAGTTTATACGTCTAAAACAAAATCAAAG 2346074 30 100.0 36 AAAATCAAAG .............................. ACTCTCTCATCGACGACCTCCGCATCTCCAACCGTG 2346140 30 100.0 36 TCCAACCGTG .............................. TCATCTGCCGTCAGCCACTCTTTTAGCACTTTGCCT 2346206 30 100.0 37 CACTTTGCCT .............................. GGCGTAGATAACCCAGACAGGCAGTACACCATAGCAA 2346273 30 100.0 35 ACCATAGCAA .............................. CGTAGTTTTTGAAGAAGTAAAGGAGGATTACTCTT 2346338 30 100.0 36 GATTACTCTT .............................. GCATTAAACGGGATTTGGGGGATATAGGGTTTCACA 2346404 30 100.0 38 GGGTTTCACA .............................. TTGCAAGCTAATCATAAAGAAAATAAAGTCCCTTTTGG 2346472 30 100.0 35 TCCCTTTTGG .............................. GACAATGGTATACCACTTAAGGAATGCGTATCAGA 2346537 30 100.0 37 GCGTATCAGA .............................. CACTTTTAAAGCAAGGAGCTTTAAAAGGACTTTCTAT 2346604 30 100.0 37 GACTTTCTAT .............................. TTAGCCAGCTTTTTATTTCTGTTGTAGAAATTTTATT 2346671 30 100.0 37 AAATTTTATT .............................. CTACATCTAAGAGTGGACGGAACCGAAGAAAATAGTC 2346738 30 100.0 38 GAAAATAGTC .............................. AAAGTGTATCTCCCAAGACCACCGATACAAGCAATCAA 2346806 30 100.0 36 AAGCAATCAA .............................. GTTCATTTAACTTCCCTCCTTCGCTGTTTCTATAGT 2346872 30 100.0 36 TTTCTATAGT .............................. TATTTCAGCATAGTTATTGCTATCCTGCTGGGCATA 2346938 30 100.0 GCTGGGCATA .............................. AACCAAACTTGAAAAAAGCTGCATTTTTCAAGTTTA ========== ====== ====== ====== ========== ============================== 62 30 36 GTTTCAATTCCTTATAGGTAGGCTAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.70,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [153,325] Score: 0.18/0.18 # # Final direction: R [0.37,4.68 Confidence: HIGH] >NC_014538 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2348597 30 100.0 36 NNNNNNNNNN CAC.ATT...AGG................. CTTTTCTGACCACCAAAAACCTATGTGGCTGTTCTG 2348663 30 100.0 35 NNNNNNNNNN .............................. GATTCTACTGCATTATTACATCTTGTGCTACATCA 2348728 30 100.0 37 NNNNNNNNNN .............................. TCAGCAGGTTTTATGTCAAGCCTATCAAGCACGTCTT 2348795 30 100.0 36 NNNNNNNNNN .............................. TTAGCCTCAGCTAATCTCTGTTGAAACTCCTCACTC 2348861 30 100.0 36 NNNNNNNNNN .............................. CACATTGAAAGATGGCACGGTTATTAAAATAGACGA 2348927 30 100.0 36 NNNNNNNNNN .............................. TTCAAAGCGTATTTACATTTTAGCAGATGTGGATGG 2348993 30 100.0 36 NNNNNNNNNN .............................. TTGCCACGTTCAGGGGCTCTTCTTTTCATTTCTCTT 2349059 30 100.0 38 NNNNNNNNNN .............................. CAACGTCTATGTCTATGCTTGCGTGCGGCAGATTGCAA 2349127 30 100.0 36 NNNNNNNNNN .............................. ACCCACCAAACCAACAGGTGAGATTGTTCCACGATA 2349193 30 100.0 36 NNNNNNNNNN .............................. TGTGCCTATTTCAGACTCAAAACCACCATTTGCCAA 2349259 30 100.0 38 NNNNNNNNNN .............................. ACAAGCCCAGTAGGGCTTTTATTTTTGCGCAGAAAGGA 2349327 30 100.0 39 NNNNNNNNNN .............................. CAATAAAGAGCTGTTTGAGATGCTACAACAAATTAGGCT 2349396 30 100.0 36 NNNNNNNNNN .............................. TGCTCCGACGTGCCATAACTGCTATAGCAGATACGT 2349462 30 100.0 36 NNNNNNNNNN .............................. GTTGTGAAACTGCCGGAGGATATTGGTGAAGAAAAA 2349528 30 100.0 35 NNNNNNNNNN .............................. CCGAGTTCAATACCTTCACCCACCAAACCAACAGG 2349593 30 100.0 36 NNNNNNNNNN .............................. ATGTAGACGTATATGTCGCCGCCAGCACCAGCAACC 2349659 30 100.0 36 NNNNNNNNNN .............................. GCTGCTCTTCTTTTTGAAACTTTTTAGCTTCTGCAA 2349725 30 100.0 37 NNNNNNNNNN .............................. TAAGTATCCGCACCAATATCTTTTGTGCTGCAAATAC 2349792 30 100.0 35 NNNNNNNNNN .............................. ACAAATTGAAACGAAAGGAGGTATGCTTATGAGCT 2349857 30 100.0 36 NNNNNNNNNN .............................. TAGGTTTTAAAGTACACTACAGGGTTGGTGGTGGTG 2349923 30 100.0 36 NNNNNNNNNN .............................. GAAGTCGCCGTTATTAGCTTTGCAAAAGGCTATATA 2349989 30 100.0 37 NNNNNNNNNN .............................. CTAATGAAGGATTACTGCGCCCATTCTCAATATCACT 2350056 30 100.0 37 NNNNNNNNNN .............................. CTACTGTGAATTAGCACAAAGAGAGGAGGCAGCGATA 2350123 30 100.0 37 NNNNNNNNNN .............................. TCCCAATTTTGGGGATTTATTAAATCCTCTAATAAAT 2350190 30 100.0 38 NNNNNNNNNN .............................. GGAGTAAATCTTTTTTAGTGACTTTGTACTTTTTAGTG 2350258 30 100.0 36 NNNNNNNNNN .............................. TTCTCACATTCAACCCAATATCAGCTTTACATTGGT 2350324 30 100.0 36 NNNNNNNNNN .............................. AAATTATCAAGTTATCTTCCTTTGCACTCTAAATGG 2350390 30 100.0 36 NNNNNNNNNN .............................. TATCGGATTCCTACGTAAAAATTACAAAGGTTGCAA 2350456 30 100.0 38 NNNNNNNNNN .............................. CAGGTATGAAATCTCCGTATTCTGCAAACTCGTCTTTC 2350524 30 100.0 37 NNNNNNNNNN .............................. AATTGTTTTTCTTCTTTTGTAAGTTCAAGTTCAAGCC 2350591 30 100.0 36 NNNNNNNNNN .............................. GCATAAACAAAGCAGAAGTAGTACCAAGCCCTTACT 2350657 30 100.0 37 NNNNNNNNNN .............................. AAATGTTTGTTTTGACAAACTCAATTACTTTCTTTTC 2350724 30 100.0 38 NNNNNNNNNN .............................. TGATGAATTAGGCCGAATACTTCGACCTGTCGTTGGGT 2350792 30 100.0 36 NNNNNNNNNN .............................. TATTGAAAGTAGATTTGGAAAGATGCATAGGCAAAT 2350858 30 100.0 37 NNNNNNNNNN .............................. CTGCATCATCATAAGGTGTTTCGAGCGGAAAATCGGT 2350925 30 100.0 36 NNNNNNNNNN .............................. AAGACGCAGCTTGACAGAGGTAACTGTTGGCTGGGG 2350991 30 100.0 36 NNNNNNNNNN .............................. GTAACGGGAGGTAGATAGCATGGCAATGATACAAAT 2351057 30 100.0 36 NNNNNNNNNN .............................. GCGACCCTGCATTACAGGCTGGTGACTACATCAACC 2351123 30 100.0 36 NNNNNNNNNN .............................. GATTATTCATGAATGGAAGCCAGGGGTAAACATATC 2351189 30 100.0 37 NNNNNNNNNN .............................. ACGACCCATCGGCGCTTATAAAAATTGGCTGGAAAGA 2351256 30 100.0 37 NNNNNNNNNN .............................. CTTCAGGAATCCAATCATGAATTCCTGTGGAACCCCA 2351323 30 100.0 38 NNNNNNNNNN .............................. TTAGCTATTGGTATAGCTAAACCGTCTATATGTCCTCT 2351391 30 100.0 37 NNNNNNNNNN .............................. TGTCAAGTGGAAGCCTTAAAACATATTACAATTCCAT 2351458 30 100.0 35 NNNNNNNNNN .............................. ACCGCTGCCGGTGGATGAATATACAACGTTGAAGA 2351523 30 100.0 37 NNNNNNNNNN .............................. GCAATAAATGCTATTCAAGCTGTGCTTCCCTTAGCTG 2351590 30 100.0 36 NNNNNNNNNN .............................. GTACACCAGAAAACAAAGTAGCCCAATCTAACTGCA 2351656 30 100.0 36 NNNNNNNNNN .............................. TTTCTACCGAATCAACTTTTATTTGTTTTTTCATTT 2351722 30 100.0 36 NNNNNNNNNN .............................. TGAAGTAGAAGGCGCGAATACGCTAATGGTGCCGGG 2351788 30 100.0 36 NNNNNNNNNN .............................. TACAGTTGGCGGTGTTACGGTAAATTTCAAGCCTGA 2351854 30 100.0 35 NNNNNNNNNN .............................. GCCCAATGCGCAGCCGAATATGGCCACAGGTGGCA 2351919 30 100.0 36 NNNNNNNNNN .............................. CTGCTGCTGCATCGGTTGCAGATGTGCCCGGGAGGG 2351985 30 100.0 36 NNNNNNNNNN .............................. GCGTACAGGCACAGCAGACAAAATCTGTATCCGCAG 2352051 30 100.0 36 NNNNNNNNNN .............................. TTTACCATGTTGGTTTTACGCTCAATCTCGGTTACG 2352117 30 100.0 37 NNNNNNNNNN .............................. TCACAAATTATGTCATCGAGGATATACCGCTCAACGA 2352184 30 100.0 36 NNNNNNNNNN .............................. ATTCCGCTACTATATTTGCTAATTCTTCTTTTGTTA 2352250 30 100.0 36 NNNNNNNNNN .............................. TGATAGCACAATGGAATTTGGCACCGCTGTTCAAAA 2352316 30 100.0 36 NNNNNNNNNN .............................. CTTTATATCCCAGCATTTTTGCCATTTGTTCTTGTG 2352382 30 100.0 36 NNNNNNNNNN .............................. TATGAAGAATGGGAAGGAGGTACAATCACATGAACA 2352448 30 100.0 34 NNNNNNNNNN .............................. GCAAAAGAAGCCGGGTTTTTTGGAGGTGAAGTAG 2352512 30 100.0 37 NNNNNNNNNN .............................. CTGGTTTCCATACAGAACTTCAATCTGCTGTTGTATT 2352579 30 100.0 37 NNNNNNNNNN .............................. CCTTCCCATTCTTCATATCTCTTAAAAACTGTTCCCC 2352646 30 100.0 37 NNNNNNNNNN .............................. AATTGTTTTTCTTCTTTTGTAAGTTCAAGTTCAAGCC 2352713 30 100.0 36 NNNNNNNNNN .............................. GTAATTGTGGTTTTGATAGAAGTAATCACCTACCGG 2352779 30 100.0 36 NNNNNNNNNN .............................. TAGAAAACTTACACCTGAAGAAATTGAAGAAACCGT 2352845 30 100.0 36 NNNNNNNNNN .............................. CTGGTCAATTCTTCAAAATTGGTTCCACTTGGATAT 2352911 30 100.0 36 NNNNNNNNNN .............................. AAAACAAAGATGAATATATTAGCATAGAAAAATTGT 2352977 30 100.0 36 NNNNNNNNNN .............................. ATGAATTGTTTATTACCCTCACTTATAAAGAAAATA 2353043 30 100.0 37 NNNNNNNNNN .............................. TTATTTATGAAATTCTATTTGTTCTAAGTACTGCCCA 2353110 30 100.0 37 NNNNNNNNNN .............................. GTATTGAAAGTAGATTTGGAAAGATGCATAGGCAAAT 2353177 30 100.0 37 NNNNNNNNNN .............................. CAATAATTTTTGGAAAAGAAGCTGCAACAGTTCCTTA 2353244 30 100.0 35 NNNNNNNNNN .............................. GGTGTTCAGGATACATCAAGAAGCGGTTTATATCA 2353309 30 100.0 36 NNNNNNNNNN .............................. GAAAAAAGAATCTAATCAATTAACAGTTATGTATTA 2353375 30 100.0 36 NNNNNNNNNN .............................. AAAGTTATTGCTTCCATATCAAGCACTTTTGAAATT 2353441 30 100.0 36 NNNNNNNNNN .............................. GGAATATGAAAATGCAGGATTGCACTTTGAACCAAG 2353507 30 100.0 37 NNNNNNNNNN .............................. CCTGTGGCGGTTGGCGAAGGCTTCAGAGATGGCACAA 2353574 30 100.0 38 NNNNNNNNNN .............................. GCAAGCCTTAAATTATCTAAATCATAAATCTTTTTGTA 2353642 30 100.0 36 NNNNNNNNNN .............................. TGGAAGTGCAACAGCCGAATTCACTGGACATACTAC 2353708 30 100.0 36 NNNNNNNNNN .............................. CATTGGACGCGATAGAGTCATTGATGAAGTATGTGC 2353774 30 100.0 37 NNNNNNNNNN .............................. GAATTGCCCATTGGCATATTCTATCAGGGAAATATGG 2353841 30 100.0 36 NNNNNNNNNN .............................. TGAGAAAGGATGTGGATGTGATGGCTATTATCTATG 2353907 30 100.0 38 NNNNNNNNNN .............................. ATTTTTAAAAGTTTTTGTAGAAGTTCTTGCGGCAACTC 2353975 30 100.0 36 NNNNNNNNNN .............................. AATGTGGCAAAAGGCTAATCCCGGTCTTGGTACAAT 2354041 30 100.0 36 NNNNNNNNNN .............................. CACACTTTTTCATGATATAATGTAGATGGAATTATA 2354107 30 100.0 36 NNNNNNNNNN .............................. CCACCCTGTATAAATAATCTGAGAACACATAAAATA 2354173 30 100.0 36 NNNNNNNNNN .............................. ATTATGGGCCCTTGCTAGTATTAAGAAGACAAAAGT 2354239 30 100.0 39 NNNNNNNNNN .............................. GATGATATATGCCAGGAGCAGAATTAGCGCAATATGGAA 2354308 30 100.0 37 NNNNNNNNNN .............................. GAAGCAAAACATGGCATAGTAGGTTTTGCATTATTTA 2354375 30 100.0 36 NNNNNNNNNN .............................. ATATTTTTGAAATGGGGGTATAATTATGGCACTATT 2354441 30 100.0 37 NNNNNNNNNN .............................. GAAGTATGGCGTTAGTAAAACGCATATTTCCAGAAGC 2354508 30 100.0 36 NNNNNNNNNN .............................. CTCGAAAATTATATATTCTTTCATTCGTCTATGCCC 2354574 30 100.0 37 NNNNNNNNNN .............................. AAAAATTTATGGAGAAATACCAATTAGAAGATTTAGA 2354641 30 100.0 37 NNNNNNNNNN .............................. TAGCTGCTCTGGATGCAAAGGCAGATTATATACCGCT 2354708 30 100.0 36 NNNNNNNNNN .............................. ATTAAGAGAGCGGGCTAAATGCCCGCCCGCTAACTT 2354774 30 100.0 36 NNNNNNNNNN .............................. CTTTTCAAAAAACATATACATATCTTCTGCTGCTTT 2354840 30 100.0 37 NNNNNNNNNN .............................. TTCATTATCAGAACCCTCAAAATTAGCATTAATCAAA 2354907 30 100.0 35 NNNNNNNNNN .............................. AAGAGCAGCAAAAAAGGAGAGTTTATCTCTCCCTG 2354972 30 100.0 36 NNNNNNNNNN .............................. TTTCTGACCTCTTTTTCAAGAAGTAACCTAACAAGC 2355038 30 100.0 36 NNNNNNNNNN .............................. GCACCACACATATTACAAGTAGCCGACACAACAAAA 2355104 30 100.0 36 NNNNNNNNNN .............................. TTGCTACTTTTTTAACATACGATGTTGTACAGAGGT 2355170 30 100.0 37 NNNNNNNNNN .............................. ATAATGCAAAACCTACTATGCCATGTTTTGCTTCTAA 2355237 30 100.0 37 NNNNNNNNNN .............................. GAAAAGTTGCGTTGGCAAATGCATTTGTGAAATTGAT 2355304 30 100.0 37 NNNNNNNNNN .............................. CTAAATTAACGAAAGACGATTCAACAGGAGTAACATA 2355371 30 100.0 36 NNNNNNNNNN .............................. TATAGATGAGCAATCTGAGAGACATACGAACAAAGT 2355437 30 100.0 38 NNNNNNNNNN .............................. GAATATCTTTAGTCGCTCGTGCTTGTCAGGTGTCATTT 2355505 30 100.0 36 NNNNNNNNNN .............................. CTGCAATGAAGGCTAAAGACAGTGTGCTGAAGTTCT 2355571 30 100.0 37 NNNNNNNNNN .............................. TTGGCAAGCTGGAAGATTATAGCCTGGAGAATTTCAA 2355638 30 100.0 38 NNNNNNNNNN .............................. ATGAATTGCCCAACGTCTGCCATATGCAGCATTACCTA 2355706 30 100.0 36 NNNNNNNNNN .............................. TTGTTCCAATTTGACCAAAGGTCATTGGCATTTCTC 2355772 30 100.0 37 NNNNNNNNNN .............................. GATATCAGGTGGGTTACATACTGATGTCTTGGGTCGG 2355839 30 100.0 38 NNNNNNNNNN .............................. GGATACAGTCTGGTAGCCAACTCCTCGGTGGATATCTC 2355907 30 100.0 36 NNNNNNNNNN .............................. GTACCTTACCGTCATCTGCCTTCACCTACTTCCTTC 2355973 30 100.0 36 NNNNNNNNNN .............................. TGCCATAATATACGGTTTCATTGTTTGCCAGAACTA 2356039 30 100.0 37 NNNNNNNNNN .............................. GGTGTAAAGAGTGGTAATGTTAGTGAGTCATTGACCA 2356106 30 100.0 36 NNNNNNNNNN .............................. GATACCATTACATCCATGCATATCTTCTTGTCAATG 2356172 30 100.0 36 NNNNNNNNNN .............................. TCAGATTGATAGTGAAAAGAAGGAGGATAGTTAATA 2356238 30 100.0 35 NNNNNNNNNN .............................. ACGTCAAGGATGGTTGCCTTGCTAATAGAAGCTGT 2356303 30 100.0 38 NNNNNNNNNN .............................. TTCTAAAATCTCCTTTCTGTAACTTTCTAATTATATTG 2356371 30 100.0 37 NNNNNNNNNN .............................. GCCACAACAAACCTATCAGGAACAGCAGAAATCTTCC 2356438 30 100.0 36 NNNNNNNNNN .............................. TAGGTTTTGTATTGTTTGTAATACTGTTAGAACTGT 2356504 30 100.0 35 NNNNNNNNNN .............................. GCAACAGGATCGAAAGCATAAGAAACACTAGCAAA 2356569 30 100.0 37 NNNNNNNNNN .............................. CCTGATTTTGCTTGTCGTTAACATGGTTAAAGGGAGG 2356636 30 100.0 38 NNNNNNNNNN .............................. CTCATAACCTTATAGGCATAAGTGCTGAATGTAAACCC 2356704 30 100.0 36 NNNNNNNNNN .............................. TGATTTCAACCACGAGGAATTCCATAGGCATTACTG 2356770 30 100.0 35 NNNNNNNNNN .............................. TTGATGTTTGGGAAGGTCTCCATCATGTATCTCAA 2356835 30 100.0 37 NNNNNNNNNN .............................. TACCACCCAGAGTTTGCACAAGGGGAAGGAGGGTTAG 2356902 30 100.0 36 NNNNNNNNNN .............................. TGTGGAACCCTATCCAGTATAACCCAGGTTGTAGAG 2356968 30 100.0 35 NNNNNNNNNN .............................. GGTTAAGGAAATGCAAGAATACGGCTTTGAGATGA 2357033 30 100.0 36 NNNNNNNNNN .............................. CTATTTCCTGGTGGTTGCAGACATGGTGCAATGGGC 2357099 30 100.0 37 NNNNNNNNNN .............................. TTCTTGATTGCTTCAAGTGCCTTGTTGAAAATCTGCT 2357166 30 100.0 36 NNNNNNNNNN .............................. GTGCTGTCTCTGACTTACCTGTTCTGGTGTCTCCTA 2357232 30 100.0 36 NNNNNNNNNN .............................. GTTGGGGCATAAGGCTATAGCTATCACCGAACATGG 2357298 30 100.0 37 NNNNNNNNNN .............................. AACCACCAAAAGTTCCTAAAAAAGAAGCTGGCTATTA 2357365 30 100.0 38 NNNNNNNNNN .............................. GGAAGGTTCAATGAACATGTTGCCTTCAATTTCTGCAA 2357433 30 100.0 38 NNNNNNNNNN .............................. TCAGTGAAGATGGACGAGAACGGGAATATTAGACCTGT 2357501 30 100.0 37 NNNNNNNNNN .............................. ACGTCCCCGGCTGAGACTGGGGTACCGCCTTCTGTAG 2357568 30 100.0 35 NNNNNNNNNN .............................. CAGCAGGAATAAGAGAGGTGAGTGAGCTAAATGAA 2357633 30 100.0 35 NNNNNNNNNN .............................. ATGTCTGTGCCTACCGTGGAAGGACAGGGAGAAGT 2357698 30 100.0 37 NNNNNNNNNN .............................. TGGCTATACGCACGGTGTTCCTCACTGCTTCTACAGG 2357765 30 100.0 36 NNNNNNNNNN .............................. TGAGACTCTCAAGCCTTATATGACCATAGAAAAACA 2357831 30 100.0 36 NNNNNNNNNN .............................. TACTTACCTGTCCACTGATTGCTCCAGTTATTTCAA 2357897 30 100.0 36 NNNNNNNNNN .............................. CCCTACCTGTCCAGGTGGTTGTTTCTGAAGACTCAA 2357963 30 100.0 35 NNNNNNNNNN .............................. GAAGGCAGGAAGGCAAGTGTGATGGAGACTTGGAT 2358028 30 100.0 35 NNNNNNNNNN .............................. TTTGGCACCTATCTCTTCAGCTTTTTCATTCCAAA 2358093 30 100.0 37 NNNNNNNNNN .............................. CACCTATATTACCTCCTTATACTCTGGATATACCAAA 2358160 30 100.0 36 NNNNNNNNNN .............................. TCAGATTGATAGTGAAAAGAAGGAGGATAGTTAATA 2358226 30 100.0 35 NNNNNNNNNN .............................. ACGTCAAGGATGGTTGCCTTGCTAATAGAAGCTGT 2358291 30 100.0 38 NNNNNNNNNN .............................. AGTAAAAGAATTGGAAGGAGGCATAACAATGGACAAAA 2358359 30 100.0 37 NNNNNNNNNN .............................. CATGTGTTATAGCGGAAGGATTGATGTTTGATGAAAA 2358426 30 100.0 38 NNNNNNNNNN .............................. TTGCGTCACACACGACGCAGACAAGAAGAGAATTATTA 2358494 30 100.0 35 NNNNNNNNNN .............................. ATGATGAGATTAGAAAGTTTGTGAAAGAAAATTGG 2358559 30 100.0 38 NNNNNNNNNN .............................. AAATGCTAAATGACATAAAAATTGTACAATAAGGGAGG 2358627 30 100.0 37 NNNNNNNNNN .............................. GAGGAGAATGAGAAACTTGTAGAAGAAAACAAACGGT 2358694 30 100.0 37 NNNNNNNNNN .............................. ACAAAAATACGTCGCCTTGTAAATGCGGGGCAGGAAT 2358761 30 100.0 37 NNNNNNNNNN .............................. ATGAAAACAGGCAGAACGAAATAGCAAAAATATCTCG 2358828 30 100.0 36 NNNNNNNNNN .............................. CCATTCTTCCCATTCTTCCCATTCTTTCTGTCTTTT 2358894 30 100.0 38 NNNNNNNNNN .............................. GAGAAAAAAGCAAGAAAAAGCGGAGTTGCGTAGCGATT 2358962 30 100.0 36 NNNNNNNNNN .............................. CAGATACGTTAAAAGCAAGTGCCAATTTACTAACGT 2359028 30 100.0 36 NNNNNNNNNN .............................. TTGTCCCTCTATATGCACCTGCTGATTACTTGAAAT 2359094 30 100.0 37 NNNNNNNNNN .............................. ATAAAGAATTTATTGGGGAATATTGCCCAGGTTATGT 2359161 30 100.0 36 NNNNNNNNNN .............................. GAGGTAGGAAAAGAAAAGGTAAGATACTTATCCCAG 2359227 30 100.0 37 NNNNNNNNNN .............................. ATACGTCCAGGCTGTATTTCCAAGAAAGAAATCCCTG 2359294 30 100.0 36 NNNNNNNNNN .............................. CAAAAAAGCGGGCTTTAATAGACGCTACTCTTCTTG 2359360 30 100.0 35 NNNNNNNNNN .............................. CAGCAAATTCTTTATCATAGTTTATATGTTCAACG 2359425 30 100.0 37 NNNNNNNNNN .............................. TATGGTTAAAATGTATTCGTCTGCAAATTTATCTATA 2359492 30 100.0 35 NNNNNNNNNN .............................. GTAAAAGAAGCACTACATGAAGGGATGATACAAAA 2359557 30 100.0 35 NNNNNNNNNN .............................. AAGAAGTGGACTTAAATCATGTTAAAAATACAATG 2359622 30 100.0 37 NNNNNNNNNN .............................. TACATTTACGTAAAGATGATGAAATTGAAATATACAT 2359689 30 100.0 37 NNNNNNNNNN .............................. GCACTTTCTGATATACCTAAAACCTGTGCAGTTTCTT 2359756 30 100.0 36 NNNNNNNNNN .............................. TCAATAGAACAGCGATTAGAAGGAGGGATAGTACAG 2359822 30 100.0 38 NNNNNNNNNN .............................. ACCAACCTTACTGAAGCCCGGTGCTGAAAAAATTTTAA 2359890 30 100.0 36 NNNNNNNNNN .............................. GTGGAAAGTTGGCAGGTGCATAGCCAGTCATATGGG 2359956 30 100.0 37 NNNNNNNNNN .............................. ACAGTGTGGATACCCTGCTGGCACCGTTCGTAAGAAT 2360023 30 100.0 36 NNNNNNNNNN .............................. AATCACTTAGCGTTCTGATATAATGAAGTAGGATGG 2360089 30 100.0 37 NNNNNNNNNN .............................. TCTTCGGCTATCCCCCATCCATACCCCTCAATGTACA 2360156 30 100.0 37 NNNNNNNNNN .............................. CTGCTTTGTGTAATTGCTTCATAGATTCCATATTCAT 2360223 30 100.0 36 NNNNNNNNNN .............................. TTTTAAGAGAAGCTTCAATCATTGAGGAAGTAGACT 2360289 30 100.0 37 NNNNNNNNNN .............................. GATTAATGAACATGGACAAAAAAGCAAAAGAAAAAGT 2360356 30 100.0 35 NNNNNNNNNN .............................. CGAATTTGATGCCCGTTCCAATTTTCAATCTTTAT 2360421 30 100.0 37 NNNNNNNNNN .............................. CATCAAAACTAACCCATGGCGTTGTTACGCATACTGG 2360488 30 100.0 35 NNNNNNNNNN .............................. TCCATATATCTTCTGTTTTCCAATCATAAATTGGA 2360553 30 100.0 36 NNNNNNNNNN .............................. CAAAAGCTTGTCATTCAATCAAACAAAAAATCAATA 2360619 30 100.0 38 NNNNNNNNNN .............................. TCTTTTAGATTGTTTGATATAAAATTAATTGCTCCTTT 2360687 30 100.0 38 NNNNNNNNNN .............................. GGTATTACTCAATCCTCTTTGGGGAGCAGTAGGAGCAG 2360755 30 100.0 38 NNNNNNNNNN .............................. TTTCATGAATAGATTTCCCTTGCATGTACATTAAGTCA 2360823 30 100.0 35 NNNNNNNNNN .............................. CATCCACAACAATATATCTATCATTTTGTTCATCA 2360888 30 100.0 37 NNNNNNNNNN .............................. AATAATAGAAAGAGGTTCAGGATTGACAGTTCATATA 2360955 30 100.0 36 NNNNNNNNNN .............................. AGAAATTAGATGCAATTGGTAATGAAAATTCATAAA 2361021 30 100.0 36 NNNNNNNNNN .............................. CCTGGATATGGGGCTTGGTAAAACCTTTGTTGGAAG 2361087 30 100.0 37 NNNNNNNNNN .............................. CCTGAAAGCAGTGATTTATTTGAACAAAGCAAGAAAC 2361154 30 100.0 35 NNNNNNNNNN .............................. GAAAGATGAAGATTTATATTCTTTCAGGAAGCGGT 2361219 30 100.0 36 NNNNNNNNNN ................T............. ATGACTTTAAGTTCTTTTGCTGTAATACCTTTCTTC 2361285 30 100.0 37 NNNNNNNNNN .............................. CCAATTTCCTCACACTTCAACTTATATGGAAAGGAAG 2361352 30 100.0 36 NNNNNNNNNN .............................. AAATTGCAAACTTATCAAATAAAAAGGTTGTTCCTT 2361418 30 100.0 36 NNNNNNNNNN .............................. AAAAAATTTCTTTAATGTCAATATTTAGTATTTCAC 2361484 30 100.0 36 NNNNNNNNNN .............................. CAGCAATTATCGGAGAATATATCGTATACCCATCAA 2361550 30 100.0 37 NNNNNNNNNN .............................. GGCTTGCCGTTATTTTGCCAACAATGTTGGCAGCAGG 2361617 30 100.0 37 NNNNNNNNNN .............................. AAAGTAAATATATTTTGATTCGGGTAAACGGCATGGA 2361684 30 100.0 36 NNNNNNNNNN .............................. CTTCTGCCACTTCTTTTTCCTTTACAAGCTTTTGGA 2361750 30 100.0 34 NNNNNNNNNN .............................. ATGTATCCAGTGACGCAAGATTTTTTAGAGAAGA 2361814 30 100.0 37 NNNNNNNNNN .............................. TCTAAAGACAGTTCTTTTACTTCTTCTAACAGCACTC 2361881 30 100.0 38 NNNNNNNNNN .............................. CACATACGTGTTTTGGGTGTTTCTTTATTTCGTGCTAC 2361949 30 100.0 36 NNNNNNNNNN .............................. TGCAAAAAAAGCTGGTTTAAGTCATTCCTATATAAA 2362015 30 100.0 39 NNNNNNNNNN .............................. GATGAAGGACCTCACAAGTGCGGAAGGGCTGGCTTTCTT 2362084 30 100.0 37 NNNNNNNNNN .............................. CATTAGGTACAGAGGTAGAAAAAATGTTCAATACTTA 2362151 30 100.0 36 NNNNNNNNNN .............................. TTTAAAATCGTATAAAGAGCTTATTGAGCTGTATTT 2362217 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 206 30 36 GTTTCAATTCCTTATAGGTAGGCTAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.70,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [87,182] Score: 0.18/0.18 # # Final direction: R [0.37,5.09 Confidence: HIGH] >NC_014550 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================== ====== 3603165 22 100.0 38 NNNNNNNNNN .C..CT.......T..A..... TGGTTCAGGGGTTGGTTCCGGAGTCGGCTCGACCGTAG 3603225 22 100.0 74 NNNNNNNNNN .C...T..........G..... AGGCTCTTGAGTCGGCTCGACCGTAGGCTCTTGAGTCGGCTCGACCGTAGGCTCTTGAGTCGGCTCGACCGTAG 3603321 22 100.0 62 NNNNNNNNNN .C..............G..... AGGCTCCACCGTAGGTTCAGCGGTTGGTTCCGGAGTCGGCTCGACCGCAGGCTCCACCGTAG 3603405 22 100.0 50 NNNNNNNNNN .C...T..........G..... AGGCTCTTGAGTCGGCTCGACCGTAGGCTCCACCGTAGGTTCAGCGGTTG 3603477 22 100.0 38 NNNNNNNNNN ....C...........G....C AGGCTCCACCGTAGGCTCCACCGTAGGTTCAGCGGTTG 3603537 22 100.0 62 NNNNNNNNNN ....C...........G..... AGGCTCTTGAGTCGGCTCGACCGTAGGCTCTTGAGTCGGCTCGACCGTAGGCTCCACCGTAG 3603621 22 100.0 74 NNNNNNNNNN ...................... AGGTTCTGGAGTCGGCTCCACCGTAGGTTCAGCGGTTGGTTCCGGAGTCGGCTCGACCGTAGGCTCCACCGTAG 3603717 22 100.0 50 NNNNNNNNNN ...................... AGGTTCAGCGGTTGGTTCCGGAGTCGGCTCCACCGTAGGCTCCACCGTAG 3603789 22 100.0 50 NNNNNNNNNN ...................... AGGTTCAGGGGTTGGTTCCGGAGTCGGCTCCACCGTAGGTTCCGAGGTTA 3603861 22 100.0 38 NNNNNNNNNN ...................... TGGTTCCGGAGTCGGCTCGACCGTAGGCTCCACCGTAG 3603921 22 100.0 38 NNNNNNNNNN ...................... AGGTTCTGGAGTCGGCTCCACCGTAGGTTCAGGGGTTG 3603981 22 100.0 1 NNNNNNNNNN ....C................. NNNNNNNNNN ========== ====== ====== ====== ========== ====================== 12 22 52 GTTCTGGAGTCGGCTCCACCGT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-3.80,-3.80] Score: 0/0.37 # Array degeneracy analysis suggestion: R [13-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [437,1710] Score: 0.18/0.18 # # Final direction: R [0,1.23 Confidence: HIGH] >NC_014550 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2978505 29 100.0 67 NNNNNNNNNN ..T...CA.AT.C................ TCGCGTCCGTGTTCGCATCAGCGTTATCCGCAGTGTTCGCGTCCGTGTTCGCATCAGCGTTATCCGC 2978601 29 100.0 55 NNNNNNNNNN ..T...CA.AT.C................ TCGCGTCCGTGTTCGCATCAGCGTTATCCGCAGTGTTCGCGTCCGTGTTCGCGTC 2978685 29 100.0 31 NNNNNNNNNN ............................. TCGCATCGGTGTTCGCATCGGTGTTCGCATC 2978745 29 100.0 19 NNNNNNNNNN ............................. TCGCATCGGTGTTCGCATC 2978793 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 5 29 43 AGCGTTATCCGCAGTGTTCACATCCGTGT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [901,4622] Score: 0.18/0.18 # # Final direction: R [0,0.55 Confidence: HIGH] >NC_014616 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 225803 36 100.0 30 NNNNNNNNNN T................................... ATATCTAACCACGAATATAGTTAGACATGA 225869 36 100.0 30 NNNNNNNNNN .................................... CCAGCAGGCCAAGTTAAGCGGCGTGAGTTT 225935 36 100.0 30 NNNNNNNNNN .................................... ACTCACCCCAGCGGCGGCGATCACCGACTT 226001 36 100.0 31 NNNNNNNNNN .................................... ACATACGTGCTCTTCTTTTTCTGCTGCTGTA 226068 36 100.0 30 NNNNNNNNNN .................................... GTCACATAGCAGCTACCAAACGTCACGTCA 226134 36 100.0 30 NNNNNNNNNN .................................... GCAGTCCGAAATTGTTAGCGGTGCGTCAAA 226200 36 100.0 30 NNNNNNNNNN .................................... ACAATGCTGGCCATGCCGTTGAGATTGTTG 226266 36 100.0 30 NNNNNNNNNN .................................... TGTATTTCGGCTGCAATAACATCACCACAA 226332 36 100.0 30 NNNNNNNNNN .................................... ATTAGAGAACGCCGTTGCGGCGAAACTCTT 226398 36 100.0 30 NNNNNNNNNN .................................... GTTAAGTCGTCATCCATTTGTGTTTGGGTA 226464 36 100.0 26 NNNNNNNNNN .................................... AACAACACACACACAGAGCAGCAGTG 226526 36 100.0 30 NNNNNNNNNN .................................... CTAAATCACAGCAGAAACCAAGCTCCCAAA 226592 36 100.0 30 NNNNNNNNNN .................................... AGGACAGCGCGTCGACATCCAACGATGCGA 226658 36 100.0 30 NNNNNNNNNN .................................... TACGCGGCAATATCTGGGTTTTAAGTCTAT 226724 36 100.0 30 NNNNNNNNNN .................................... TCATGCGTGGAGAATTGTCCAGTGAAAGAA 226790 36 100.0 30 NNNNNNNNNN .................................... ACAAAGGGTGCGTTATTGCAAGCCGGTATG 226856 36 100.0 30 NNNNNNNNNN .................................... ACTTGACTTCGGGCGAACAGAACAGTACAA 226922 36 100.0 30 NNNNNNNNNN .................................... CCTCGATGGGTGCATCCAGATATCGCGCGA 226988 36 100.0 30 NNNNNNNNNN .................................... TAATAATATGCTGGACATGCAAATAATGGT 227054 36 100.0 30 NNNNNNNNNN .................................... AAATGTACCGCAATGAAACGGATGCGACAA 227120 36 100.0 30 NNNNNNNNNN .................................... TGCTGGGCGAGTTGCAGCAGCGCGTCCGCG 227186 36 100.0 30 NNNNNNNNNN .................................... CCGTATGCGTATACGTCGCGTTGACCGAAA 227252 36 100.0 30 NNNNNNNNNN .................................... TCGATTGACGACAGGTGTTACAATATGGAG 227318 36 100.0 30 NNNNNNNNNN .................................... CTATGCCCGAAGTGATATGCGGGTAGTACG 227384 36 100.0 30 NNNNNNNNNN .................................... ATATGGGTCGCACCCATCACGTTAGACGGG 227450 36 100.0 30 NNNNNNNNNN .................................... CGCATGCGACATACTCAACACACGTTTCGA 227516 36 100.0 30 NNNNNNNNNN .................................... TGTTGTTTCTTCATAACTAACAATATAGCG 227582 36 100.0 31 NNNNNNNNNN .................................... CGCCTCATCGACCCACTGCGCCATCAGCGTG 227649 36 100.0 31 NNNNNNNNNN .................................... GCCGAAGATTGCTCGGAACGGTCGGGCCGTA 227716 36 100.0 30 NNNNNNNNNN .................................... ACATATCTCCAGCCAGCGCTCATCCACGGT 227782 36 100.0 30 NNNNNNNNNN .................................... TGAATGTAACCGACATTCCGGCCTACGCCA 227848 36 100.0 30 NNNNNNNNNN .................................... GCGATATACATGCTGGTGTCAAAATGTACG 227914 36 100.0 30 NNNNNNNNNN .................................... GTGATATCATGAGTGGCGCGGGGTGGTGAC 227980 36 100.0 30 NNNNNNNNNN .................................... ATACACACACAACAGCAATGGGAAAAGCAA 228046 36 100.0 30 NNNNNNNNNN .................................... AGATAATATCGTCCTCAACCACGTTACCGC 228112 36 100.0 30 NNNNNNNNNN .................................... TCTTTGTCTGTGTGCGTACTTTTATGGTGT 228178 36 100.0 30 NNNNNNNNNN .................................... ACCGTGTTTTCAGATTTCCCCGCGACGCAG 228244 36 100.0 30 NNNNNNNNNN .................................... TAGATTCGCGGCAGGTGTTACAATCTGGAA 228310 36 100.0 30 NNNNNNNNNN .................................... TTGCTGTTCTTCGTGGTCATGTTCGCTACC 228376 36 100.0 30 NNNNNNNNNN .................................... CAGCCTATTTCGACCGTATCATAAAAGACA 228442 36 100.0 30 NNNNNNNNNN .................................... GTTTTATTGCCGATATTGTCGGAAACTTCT 228508 36 100.0 30 NNNNNNNNNN .................................... TGAAGAAACAGATAGGGGAATTTTATTATG 228574 36 100.0 30 NNNNNNNNNN .................................... AGGTACCGCATATTGTCGGGGAATATTTCA 228640 36 100.0 30 NNNNNNNNNN .................................... ATACGGGCTAAGCTGCCGCAACGCGGATGC 228706 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 45 36 29 GTGGTCAAAGTCATTGATCTGACAGGCATCTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.70,-3.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [45.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [341,29] Score: 0.18/0.18 # # Final direction: R [0.18,1.05 Confidence: HIGH] >NC_014624 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 149771 30 100.0 36 NNNNNNNNNN .............................. GAAATTTTATTTATAATTAAATAACCGTCCTGTAGT 149837 30 100.0 36 NNNNNNNNNN .............................. TGGCGAGTTCGACAGTATCCCAGGACCACAGTTGTT 149903 30 100.0 37 NNNNNNNNNN .............................. ATGGCATATGGATATGACCAGGCTTTCATACCAGGGT 149970 30 100.0 36 NNNNNNNNNN .............................. CCGACTGTTAGGAAAATACTCGTTGCGGCGTTTTCC 150036 30 100.0 36 NNNNNNNNNN .............................. ATTCCCAAAGGTTTATTATTTTTTTCAAAAATTTCT 150102 30 100.0 36 NNNNNNNNNN .............................. ATTCCAGCAGCGCATAATTCTCATAAAACTTTAAAA 150168 30 100.0 36 NNNNNNNNNN .............................. TCGTTATTAAAAACAAAACCGGGATTACTTTCTTTG 150234 30 100.0 38 NNNNNNNNNN .............................. TGGCTGTACGCCCAGCAGCTCTAAAATTTTAGGACCGG 150302 30 100.0 35 NNNNNNNNNN .............................. TTTTTTTACTACCTAAATTGGAGTGAGCGGATTAC 150367 30 100.0 37 NNNNNNNNNN .............................. GACACTTCGTAATCCGACCTCCGCAGGATTCCCCTTG 150434 30 100.0 37 NNNNNNNNNN .............................. TAGGCCATCGCTCGGAGATCGCGCTGCATCTGGCCAA 150501 30 100.0 36 NNNNNNNNNN .............................. CCATATTCCAAAAGGATATCACCGGCTGTCTCGGTT 150567 30 100.0 35 NNNNNNNNNN .............................. TAAAGAAGTTTTTAAAAAAGATGGTTGTTTGTTGA 150632 30 100.0 36 NNNNNNNNNN .............................. GATCAATATCCCAGCAGTTAATATTGCATTTATAAA 150698 30 100.0 35 NNNNNNNNNN .............................. GCGCTGGACCCAGCGCGGCAGCGCCAATGGCCAGC 150763 30 100.0 36 NNNNNNNNNN .............................. AAAACGGCGAAAGACCACGGAGGAGCGCGCCGAATG 150829 30 100.0 35 NNNNNNNNNN .............................. GGCCGAGAGTCCTTGGAGTACAGTATTTCCGACGA 150894 30 100.0 35 NNNNNNNNNN .............................. TTTCCAATTTCAAGGCTCTGGAGAATAAGCTCTCG 150959 30 100.0 37 NNNNNNNNNN .............................. ATACTAAAAATTCGAACTGGCTTAAATAAAGACGCCA 151026 30 100.0 36 NNNNNNNNNN .............................. ATGATTCTAACTCCTGCTTAATGAAACGAGATATGA 151092 30 100.0 36 NNNNNNNNNN .............................. GCGCAAAGAACGATGCCCAGGCAGCAAAAGTAGAAG 151158 30 100.0 36 NNNNNNNNNN .............................. TGGAGGATCCGGAAAACACGCGCAAGCTCAAGCGCT 151224 30 100.0 37 NNNNNNNNNN .............................. GCTAAAGGATTGGATTGATATCTTCCTTGGCATCTGG 151291 30 100.0 37 NNNNNNNNNN .............................. ATATTTTAGAAGAAGATGAATCTGTCGTTTGCGGAAA 151358 30 100.0 37 NNNNNNNNNN .............................. TTTTTGCAATGTGGTGTATAAAGCACCGGCTTTTTGT 151425 30 100.0 36 NNNNNNNNNN .............................. ACTTTAACGGGGAGGTCCTTGATGGCCAACACGACC 151491 30 100.0 36 NNNNNNNNNN .............................. ATGTGGAACACCCGCACGCCGGAGATTGTGCGGTGC 151557 30 100.0 35 NNNNNNNNNN .............................. GCGTTCTTATGCTTGGCACCTCAAAGGAACAGGAG 151622 30 100.0 36 NNNNNNNNNN .............................. TGGGGGTGGCGGCATTGGATTCCAGCAGCACCTGTT 151688 30 100.0 36 NNNNNNNNNN .............................. AAGTAAAGGTATCTGAATCCCAGAAGATCAAATTGG 151754 30 100.0 34 NNNNNNNNNN .............................. GATAGTCCACCGGATTCACGACCAGCAGCACCTC 151818 30 100.0 36 NNNNNNNNNN .............................. TAGGGGCCGTTGTAACCATTGCTGGAGTAGCCCAGG 151884 30 100.0 34 NNNNNNNNNN .............................. GATAGTCCACCGGATTCACGACCAGCAGCACCTC 151948 30 100.0 34 NNNNNNNNNN .............................. TCGGCTTCCTTGCGCAGCTCCTGGGCATTGCCCT 152012 30 100.0 36 NNNNNNNNNN .............................. CCTTTGGCCCCCGTGGCACCTTTAATATTTCCGGCC 152078 30 100.0 36 NNNNNNNNNN .............................. TCCAAACAACAGTGCGAAGGTTTGTTCTCCGACAAT 152144 30 100.0 36 NNNNNNNNNN .............................. GGTAATGGCATGATCTCTCCTTTTTACTATGCAAAA 152210 30 100.0 36 NNNNNNNNNN .............................. TAAGGGTTACACGAAAGAATGCCTGGTAGAAAAAAT 152276 30 100.0 36 NNNNNNNNNN .............................. GCGCCTTTGCTGGCGCCATTTTCCTATTACTCAGTG 152342 30 100.0 35 NNNNNNNNNN .............................. CATGCAATTGAATCTATTACGTCAACGATTGATAA 152407 30 100.0 35 NNNNNNNNNN .............................. TAGTCTAAGTCAATCAAAATTTGTTCGATGTCCGC 152472 30 100.0 36 NNNNNNNNNN .............................. CGGAATCCCTCGTTATTATCGTATAACAGCTTTAAA 152538 30 100.0 35 NNNNNNNNNN .............................. CTGCTGGAGCATCTATCAGGACAAACGGGTCTAAA 152603 30 100.0 36 NNNNNNNNNN .............................. ATAATATTATCTATTGCTAAATAAGTGCATAAAGGT 152669 30 100.0 35 NNNNNNNNNN .............................. GGGTTTTGCTTAAGCCTTTCATCATATCGGGCATC 152734 30 100.0 35 NNNNNNNNNN .............................. ATTTGAGGAATTATAAAAAGGAAATAACTGTGACA 152799 30 100.0 37 NNNNNNNNNN .............................. ATTCCTTTTTTTCGGAGTTTTTTCTCGGTTGATCGCC 152866 30 100.0 37 NNNNNNNNNN .............................. CCTCAAGGCTGCCTTGGCGTTCGGTGATATTGTTCTG 152933 30 100.0 36 NNNNNNNNNN .............................. TACGGTTCCCCCCTTTATCTGTATTTTATTTTTTGT 152999 30 100.0 35 NNNNNNNNNN .............................. TCAATCCCCATTGCCTCGACGATCTGAATGGCTTC 153064 30 100.0 36 NNNNNNNNNN .............................. GACGAAGATGCACGATTCGAAAATCTGGATGCAATC 153130 30 100.0 36 NNNNNNNNNN .............................. GGTGGTAAAAAATGGTGGGAGTCACTGGAGGTTGAA 153196 30 100.0 36 NNNNNNNNNN .............................. AGCATTATTTAAAAGAGAAATCCAGCGGCTGACTGG 153262 30 100.0 35 NNNNNNNNNN .............................. ATGGCAGCAAGGACTTTCTCTCGGTCGCCGCCCTT 153327 30 100.0 34 NNNNNNNNNN .............................. TCAAAGAGAATGAGCTGGCTCTGTCCGGGATTGT 153391 30 100.0 36 NNNNNNNNNN .............................. ATGGCTTTTCCGAGATTATTGAAAGCCTGGGCAAAG 153457 30 100.0 35 NNNNNNNNNN .............................. ATATAGCCTTCTTTAAACTGGTTATCGCTGTTATA 153522 30 100.0 1 NNNNNNNNNN .......................AGGTGT. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 58 30 35 GTTGAAGATTAACATGAGATGTATTTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [182,86] Score: 0.18/0.18 # # Final direction: F [0.59,0.27 Confidence: MEDIUM] >NC_014623 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================= ====== 10193893 17 94.1 45 AGGGGCGGAA -................ AGGGGACGCCCGGCGGGGCGGCGCCGGAGCGAACGGGCAACCGGG 10193955 17 100.0 33 GGCAACCGGG ................. TCAATCTTGAGTTCTCGGCCCAGACCGGACCGG 10194005 17 100.0 31 ACCGGACCGG ................. CTGGTCCGGGTCGAGGTCCGCCGTCGGCCGC 10194053 17 100.0 CGTCGGCCGC ................. TCGCGCGGTCC ========== ====== ====== ====== ========== ================= 4 17 36 GTGTTCCACGTGGAACA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [4,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [20.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [97,95] Score: 0/0.18 # # Final direction: R [0,0.68 Confidence: HIGH] >NC_014624 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 3935714 30 100.0 36 GGCATTCTTT .............................. GTTTCCAACTTCCGCGGAAAATCACGCCGATATTCA 3935780 30 100.0 36 CCGATATTCA .............................. AAAAATATGTTATACTCCCCTTATAAACACTCTGAG 3935846 30 100.0 37 ACACTCTGAG .............................. TCAATCCCGATTATGCAGAAGCCTATATGGGGTTCCC 3935913 30 100.0 35 TGGGGTTCCC .............................. GAGGACGAAGGGTAGGCCTGCGATTGTTAGGTTCA 3935978 30 100.0 36 GTTAGGTTCA .............................. AGGTATTCCCCGCCGTCACCTTCAATACTCTGTGCC 3936044 30 100.0 35 ACTCTGTGCC .............................. CTCTTATTTCTGCTGGCTGATCTTCTGCTAATTTT 3936109 30 100.0 37 TGCTAATTTT .............................. TCAACAATCTGGGTTTAAAATGCGTGCTTGCAGAAAG 3936176 30 100.0 36 TTGCAGAAAG .............................. CCCTCCATTCTACTAACCCCTCTAACGCAATCGTTA 3936242 30 100.0 36 GCAATCGTTA .............................. TTCGTGGGCGTTTTCTAACCAAAAACCATAATCTAC 3936308 30 100.0 36 CATAATCTAC .............................. ATTTTTTTGTAATGTGATCAATACTCAAGCTCATAA 3936374 30 100.0 36 AAGCTCATAA .............................. CTTTGCATGGGCGAACAAAGTACAAGGCGAAATAGA 3936440 30 100.0 35 GCGAAATAGA .............................. GAGGACGAAGGGTAGGCCTGCGATTGTTAGGTTCA 3936505 30 100.0 36 GTTAGGTTCA .............................. GAGCTACTGGGATCTGAACAATGGTGAAATTGTTTT 3936571 30 100.0 36 AAATTGTTTT .............................. TGAAATTGTAAAAAGCGTAATTGAGAGCGGTCGCTA 3936637 30 100.0 36 GCGGTCGCTA .............................. TTTCCGGTACAAAGGCATTATTGGCAGCCTGTTTTA 3936703 30 100.0 36 GCCTGTTTTA .............................. TTCGCCCATGATGTTCATGCGGGATGTCCCTGTCAG 3936769 30 100.0 35 TCCCTGTCAG .............................. GCCCGTTTTGCTTTATCCGGTCAGTTCGGAGGGAA 3936834 30 100.0 35 TCGGAGGGAA .............................. CTGTACGGTCTTTTCTTCCAGGGCTTCAAGGCGCT 3936899 30 100.0 36 TCAAGGCGCT .............................. TTCATTTCTACTAATGCTACAGACTCTACCTTTGGC 3936965 30 100.0 36 TACCTTTGGC .............................. GGACAGCTTTACCCGCAAGGCCTATGCCCTTTACGA 3937031 30 100.0 35 CCCTTTACGA .............................. AGCCTGCCGGATCCGGAAACCTGGCTGGAAGGCTT 3937096 30 100.0 34 TGGAAGGCTT .............................. AAGGCGTCCGGGCTTTTGGAGAGCTACAGGTATA 3937160 30 100.0 36 TACAGGTATA .............................. GCCTTTGTGGAAGGCGCTAAAAAGGTGATCAAAAAA 3937226 30 100.0 36 GATCAAAAAA .............................. AGGGCGTCTAGATGGCGTCCTTTTAATTTTACAAGA 3937292 30 100.0 34 TTTTACAAGA .............................. TATCCACTCACCATTTTTATAAATCCCTTTATAT 3937356 30 100.0 35 CCCTTTATAT .............................. TATTGCTTAACTGCATCTTCCAGAATTTTATTCTG 3937421 30 100.0 37 TTTTATTCTG .............................. GCTGTACTCTCGCCCTGTTCGATGTCTCTTGCGTCGA 3937488 30 100.0 36 CTTGCGTCGA .............................. AGAAAACGCCCAGGGCGGCGCCATTAACCGCGTTCT 3937554 30 100.0 35 ACCGCGTTCT .............................. AGGCGCTGGTGAAGCGGCAGAAAGGAAGGGAATAA 3937619 30 100.0 35 AAGGGAATAA .............................. TCGACTTTACTTTGTTCATAATCCGGCGCTACTGG 3937684 30 100.0 36 GCGCTACTGG .............................. ATTGAGCTTTCAATTTCTTCTCCGACCGATAAGATC 3937750 30 100.0 36 CGATAAGATC .............................. GGATGATTTCCACGGTATCGCTGCTGTTTCCAAAGG 3937816 30 100.0 36 TTTCCAAAGG .............................. CTCTTCATCAAACAAAGGAACTCCATCCCATGCTAA 3937882 30 100.0 CCCATGCTAA .............................. CATAGCGATC ========== ====== ====== ====== ========== ============================== 34 30 35 ATTTAAATACATCTCATGTTAAACTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [238,134] Score: 0/0.18 # # Final direction: NA [0,0 Confidence: NA] >NC_014625 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 1868502 31 100.0 35 ACCCACCGGA ............................... CCCCGATCCAACCGCGAAGTGGGCCAGCCGCGATG 1868568 31 100.0 36 AGCCGCGATG ............................... CACTGTCACTCCGACTTGGAGAGCATCTACAATGAC 1868635 31 96.8 34 CTACAATGAC ..............................C CAGTTGGCGTGCGGGCGTCCACATCTGAATGATG 1868700 31 100.0 35 CTGAATGATG ............................... CTCCCATAAAAAAACCCGCCTCTAAGGGCGGGCTG 1868766 31 100.0 34 GGGCGGGCTG ............................... CTGCTTCCGGTAAAACTCCACCGCAGCGTGGAAC 1868831 31 100.0 42 AGCGTGGAAC ............................... CGATGCCGTCCTCGCGTCCCTCCAATCCAGCGCGCGGTCGCT 1868904 31 77.4 37 CGCGGTCGCT -------........................ CAGCGACCAATGGCGCGTAGCGACACCCTATCAGGAC 1868972 31 100.0 36 CTATCAGGAC ............................... CTACGCTATGACCCAGATCCTCCGGGGGCGCGCAAC 1869039 31 100.0 35 GGCGCGCAAC ............................... CCCCAGCAGGCGCGGCGCAGACGACAGGCGGGACG 1869105 31 96.8 AGGCGGGACG .....................G......... GATCTGCTTA ========== ====== ====== ====== ========== =============================== 10 31 36 GTCGCTCCCCCCACGGGAGCGTGGATAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [7,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [178,122] Score: 0/0.18 # # Final direction: F [1.15,0 Confidence: HIGH] >NC_014633 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 744582 36 100.0 30 NNNNNNNNNN C.C................................. AAGTTATACTTGAGTATAGAAAAAGCGGTG 744648 36 100.0 30 NNNNNNNNNN .................................... ATTCTAAATGTGATACCCTTAGTTTTATTT 744714 36 100.0 30 NNNNNNNNNN .................................... GACTTGGAAGAGATTTTATCTGCAATAGGA 744780 36 100.0 30 NNNNNNNNNN .................................... TTTGATTTATTAGAAACCTAAAGTGATTAG 744846 36 100.0 30 NNNNNNNNNN .................................... AAGAGGGGAAAAACTAACCTCTCTTTTTGT 744912 36 100.0 30 NNNNNNNNNN .................................... ACTAGAAGAAAGTAAAGCTTGGATAGACTT 744978 36 100.0 30 NNNNNNNNNN .................................... AAAATCTAAAAACTTAATACAGTTTGCAAT 745044 36 100.0 28 NNNNNNNNNN .................................... AGAGAGGATTACATAGTCAAAGATATAG 745108 36 100.0 30 NNNNNNNNNN .................................... AGAAGAGAAAAGGCTTCAGACAGATAAAGC 745174 36 100.0 30 NNNNNNNNNN .................................... GGTGGGGTTGTATATGACAGAGAGTTTATA 745240 36 100.0 30 NNNNNNNNNN .................................... CCTGCCTGCATTTGGCTTTTGGCCTGCTTC 745306 36 100.0 30 NNNNNNNNNN .................................... TCACTTTGTCTCAACTACTCCACATTTTCC 745372 36 100.0 29 NNNNNNNNNN .................................... TAAAAATAACGCTACAAAGCTTACAGCCG 745437 36 100.0 30 NNNNNNNNNN .................................... AAAGTGAATGTTATACACGCTGTCAAAGAG 745503 36 100.0 30 NNNNNNNNNN .................................... CTAGAGGAGGTATAAATGTTCGGTGTAGGA 745569 36 100.0 30 NNNNNNNNNN .................................... AAGTACCGCCTTACAGTATTCACAATATAA 745635 36 100.0 30 NNNNNNNNNN .................................... ATTATAATTTTTACTATCTACCTTTGATAA 745701 36 100.0 30 NNNNNNNNNN .................................... GTATCAAGCGATATTACATATCAGCAAGGG 745767 36 100.0 30 NNNNNNNNNN .................................... AAAATCGGATGGTTCATGGCATGTAGAAGG 745833 36 100.0 30 NNNNNNNNNN .................................... TCAAAAGAATTAGATTATACAATGGGTTAT 745899 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 21 36 29 GTTGTACTTCCCTAATTATTTTAGCTATGTTACAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.22%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.90,-0.50] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [114,101] Score: 0/0.18 # # Final direction: R [0,0.41 Confidence: MEDIUM] >NC_014643 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 2360638 35 100.0 38 TCGGGTAGTC ................................... CTGCCGGGCTGATCGCGGTTATAGTAATCCGGCCAATA 2360711 35 100.0 37 CCGGCCAATA ................................... CAACACCCGCATCCGAAAGGGCATCCGCAACTTTGGT 2360783 35 100.0 38 CAACTTTGGT ................................... CATTTTTACCGCGTGCACGGAGTTTTGTTCGCGCTTTG 2360856 35 100.0 TCGCGCTTTG ................................... GTTACGCCA ========== ====== ====== ====== ========== =================================== 4 35 37 CCCTCAATGAAAGTCACCTGTTCTCACAGGTGAGA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:51.43%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.60,-6.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [53.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [132,2] Score: 0.18/0.18 # # Final direction: R [0.18,0.64 Confidence: MEDIUM] >NC_014650 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 263676 30 100.0 36 ATTTTTTGGG .............................. GTGAGGTTGTATAGAAAGGAGATAGCAAGAAATGAA 263742 30 100.0 37 AAGAAATGAA .............................. TAGGGCTTGCGTCTGAATCTCTTGTGAAAAAACTCAA 263809 30 100.0 37 AAAAACTCAA .............................. GGATTAGTTGGCGCTGTTTTAGGACCATTGTTAGCAA 263876 30 100.0 35 TTGTTAGCAA .............................. TTCTCCTCTTGTTGGTCAATATATTGTTTGTAATT 263941 30 100.0 36 GTTTGTAATT .............................. CCAAAAGACTCGGGATGATGATATTTTTGGGATTCT 264007 30 100.0 36 TTGGGATTCT .............................. ACTTTTATCGAGCCGAGTGAAACAGATACGAATAAA 264073 30 100.0 39 TACGAATAAA .............................. GGTATAAGTTCGATCTTTCGCTTTCCAGCTTGGATTTTG 264142 30 100.0 37 TTGGATTTTG .............................. TGACGCTATTTGGAATTTGTTAAGAGAAGAAGGATTA 264209 30 100.0 38 AGAAGGATTA .............................. TCAAATGAGGTGATTACATATGGAAGAAAAATATGTAG 264277 30 100.0 37 AAATATGTAG .............................. AACGTCACCATGTGATAATGGATTGCGCCGCGTTTCT 264344 30 96.7 37 CCGCGTTTCT .............................T GGTCATAACTAGAACGTCTTTCCTTGCGCGCAAAACC 264411 30 100.0 36 GCGCAAAACC .............................. GCGTCTTTTGCAGCAGTGACTCTCACATTGGTTGCG 264477 30 93.3 ATTGGTTGCG ....................A.G....... AAATTTTGTC ========== ====== ====== ====== ========== ============================== 13 30 36 GTTTGTATCTTACCTATGAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.00,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [263,104] Score: 0.18/0.18 # # Final direction: F [5.96,0 Confidence: HIGH] >NC_014643 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2368430 36 100.0 39 NNNNNNNNNN T.AA..............TG......CA........ ACGGGCCCGCCATGACGTGAAGACCCGCATGCTCAACGT 2368505 36 100.0 38 NNNNNNNNNN ..................T.C.T............. GTAAACCCTGCGGCAGTTACGCCGTTAAAGGAACTGTG 2368579 36 100.0 38 NNNNNNNNNN .................................... AATCGTAATCGTGGTATCACGACGTTGTCGAATACGCA 2368653 36 100.0 38 NNNNNNNNNN .................................... CCTTACGACATTAGTAGCATCTGCCCGTCTGAATTCGC 2368727 36 100.0 39 NNNNNNNNNN .................................... GCCGCGAACTTAGTGTTCAGCCCGTAAGGTTCCTGCTCT 2368802 36 100.0 36 NNNNNNNNNN .................................... GCAAGACCTCCTTGATACATCTCTATTGGCTACTGC 2368874 36 100.0 36 NNNNNNNNNN .................................... TAACAAGAAACTGGATTCCATCGCCCAAGGTATCCA 2368946 36 100.0 37 NNNNNNNNNN .................................... TGACGTATCAGGCGCTATACAGTCTATTGCGGATTCT 2369019 36 100.0 37 NNNNNNNNNN .................................... TGACGTATCAGGCGCTATACAGTCTATTGCGGATTCT 2369092 36 100.0 37 NNNNNNNNNN .................................... GAAGGAAAAGATAATGCAGCAGACTGCTCAACCGAGT 2369165 36 100.0 39 NNNNNNNNNN .................................... CTGCTGCGCTAATTTAATGAGCTGTTTTTCGGATGGCTC 2369240 36 100.0 37 NNNNNNNNNN .................................... ATACGTGTCAGCTAACTCTGCTGCCTCCGTCACCGCT 2369313 36 100.0 37 NNNNNNNNNN .................................... CGCGAATTGCGTCCCGTAAGCCTTTCTGACCCTCAAT 2369386 36 100.0 37 NNNNNNNNNN .................................... GCGCGGGCATCATTCGCGCGGGCAAAAAAGTTGTTCC 2369459 36 100.0 37 NNNNNNNNNN .................................... CTGCCCATTTAGCCGCTAAGACCTGTGTTTTGTGCTG 2369532 36 100.0 34 NNNNNNNNNN .................................... CTTTTTCCCACAGCACGGTCATTGCTTCTAGGCT 2369602 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 17 36 37 CCCTCAATGAAAGTCACCCATTCTCATGGGTGAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [10,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [269,261] Score: 0/0.18 # # Final direction: R [0.37,0.78 Confidence: MEDIUM] >NC_014644 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 836407 28 100.0 33 NNNNNNNNNN ............................ CCTTCACGTTCTTTTGCTTTACAAGTATCCTGC 836468 28 100.0 33 NNNNNNNNNN ............................ CGGCACGGTTAAGCCGTTTGATATGCCGCTCCC 836529 28 100.0 33 NNNNNNNNNN ............................ CTCATCATTGGCTACACTCTCTGGATGCTTTAA 836590 28 100.0 33 NNNNNNNNNN ............................ CCGTAAAGTTTGCATAATGCGGCAACCAGATGC 836651 28 100.0 34 NNNNNNNNNN ......................GTGAT. CTGTGTTTTTACGAGGTTTTATACCTTCAAAAAG 836713 28 100.0 33 NNNNNNNNNN ............................ TCGTTAATGCGTGCTAAAAAGTTTTGTAAATAC 836774 28 100.0 33 NNNNNNNNNN ............................ TTATAAGCTGTAATTATAGGTGTAATATCTTTA 836835 28 100.0 33 NNNNNNNNNN ............................ TGGTTTGACGGTTCAGAAACAGATGTTTATGTA 836896 28 100.0 33 NNNNNNNNNN ............................ TATCAATTTAAGAGCGAAAAGAAAAGTTTTTAT 836957 28 100.0 33 NNNNNNNNNN ............................ CCGATGCGCAATGAGTGATTATGATTTTAGAGC 837018 28 100.0 33 NNNNNNNNNN ............................ CCGATGCGCAATGAGTGATTATGATTTTAGAGC 837079 28 100.0 33 NNNNNNNNNN ............................ CACTCTTGTAGATGCTGTGCTTGAGCGGCTTAT 837140 28 100.0 33 NNNNNNNNNN ............................ GCGTCGTGCCGCGGCGTGCGATAGTGTCATCGA 837201 28 100.0 33 NNNNNNNNNN ............................ TTGTACTAGGTGGCGCAATCGATAGTTTTATTG 837262 28 100.0 33 NNNNNNNNNN ............................ TATGGCATTAAACGGCATTGACATATCATGGTA 837323 28 100.0 33 NNNNNNNNNN ............................ TATTTTCCTTATTTTGAGCTAATAATAAATTTA 837384 28 100.0 33 NNNNNNNNNN ............................ TAATCAAATTATTCGGATACTAAAAACCAAACC 837445 28 100.0 33 NNNNNNNNNN ............................ TCGTCATCACTCCATCCTTAAGCACAGGCTCAA 837506 28 100.0 33 NNNNNNNNNN ............................ TGAGCTTGTAAACGCTCTTGTAGATGCTGTGCT 837567 28 100.0 33 NNNNNNNNNN ............................ GTATGATGCATTGACGTGACATCTAAAGAACAA 837628 28 100.0 33 NNNNNNNNNN ............................ CTAACACGTTAGCAGATGTAGCCATTCGTGAAC 837689 28 100.0 33 NNNNNNNNNN ............................ CAAACGTTCTTCATTGCTTGCATTGCAAAATTA 837750 28 100.0 33 NNNNNNNNNN ............................ CCCAATGGCTTCCTCATCTCTAGCACGCTGCGC 837811 28 100.0 33 NNNNNNNNNN ............................ CTTGTATTCTCAATCAGAGAATACTTTGAGTAT 837872 28 100.0 33 NNNNNNNNNN ............................ CGAAGCCTGCGAAGTGTTCCTGCTGGAATGTTT 837933 28 100.0 33 NNNNNNNNNN ..........................T. CACGCCCGAATTGGGTATACTAAGTGTGTCGTT 837994 28 100.0 33 NNNNNNNNNN ............................ TGTCAAGTGTACCATCTTTTAATTCTTGTGCTA 838055 28 100.0 33 NNNNNNNNNN ............................ CGTATCATACTTTCTGAGTTTTGTCCTTATTGT 838116 28 100.0 33 NNNNNNNNNN ............................ CGAGTTGAGCGGCAAAGTCGAACATGAAACACA 838177 28 100.0 33 NNNNNNNNNN ............................ TAAGCACCCTAAAAACGCGGCGGGTATAACCAC 838238 28 100.0 1 NNNNNNNNNN ..C...T..........T..ATAA.A.. NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 31 28 33 GTATTTCCCGCATACGCGGGGGTGATCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-10.00,-9.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [5-9] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [78.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [109,156] Score: 0/0.18 # # Final direction: F [1.05,0.37 Confidence: MEDIUM] >NC_014650 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1450222 29 100.0 35 NNNNNNNNNN ............................. ATAACCAAGTCAGTCAGTCTGTACAGCGAATGAGC 1450286 29 100.0 36 NNNNNNNNNN ............................. GCGAACACAAGAGCACAACGTGTTTTACCGGACATC 1450351 29 100.0 35 NNNNNNNNNN ............................. ATAACCAAGTCAGTCAGTCTGTACAGCGAATGAGC 1450415 29 100.0 37 NNNNNNNNNN ............................. ATTTCCATTTGCGGCTTTCCCCTGTTTGTGCACCACC 1450481 29 100.0 36 NNNNNNNNNN ............................. TTGGCGATTTCTTGGCATCATCCTCCGGTGGTTTTT 1450546 29 100.0 38 NNNNNNNNNN ............................. TCCACGTGTAACAATGTGGAATTGCGATGCGGTATTCC 1450613 29 100.0 36 NNNNNNNNNN ............................. ATGCTTGTAATGCTTGTTCGGCTTTTCGGAGTGCAT 1450678 29 100.0 37 NNNNNNNNNN ............................. AAATCGGATCGTTTTCCGGCCGAACCCAAATGCCACG 1450744 29 100.0 36 NNNNNNNNNN ............................. CCGCATAACCGAGTCGGAACCGCATCGCATAACCGA 1450809 29 100.0 35 NNNNNNNNNN ............................. TGCACTCCTTTCTACGTATTTTGCGTATGAGTAAG 1450873 29 100.0 37 NNNNNNNNNN ............................. ATGACATGGGAATTCATGTAGAGATGACTGGGCAAGG 1450939 29 100.0 39 NNNNNNNNNN ............................. GTCCTTGTGCGCTAAGTGTAGCTATTGACAAGATAATGT 1451007 29 100.0 35 NNNNNNNNNN ............................. AGCGTTAGCGCGGTAGGGTAGGACAGGCTGTCTTT 1451071 29 100.0 35 NNNNNNNNNN ............................. CATTCCCATACTCGTACAGCTCCACAACATGACCT 1451135 29 100.0 35 NNNNNNNNNN ............................. CCGCAACGTGTACATGCACCTTGAACAATGAAGTT 1451199 29 100.0 34 NNNNNNNNNN ............................. ATTCGATCATTGCGTTTTCTTTGTTGAGTTTTTC 1451262 29 100.0 34 NNNNNNNNNN ............................. ACTCAATAAGAATAAACATCATTCTTACAAACTC 1451325 29 100.0 36 NNNNNNNNNN ............................. ATGCCACCCCTATTCCGAAAGGATAGGAAAAACAAT 1451390 29 100.0 39 NNNNNNNNNN ............................. AGAAACTAGCAAGTAGAAAAATCGCAAGTGAAAAACAAG 1451458 29 100.0 37 NNNNNNNNNN ............................. AGGATGAACATGGGAACATCATCATGACGGGGAACGA 1451524 29 100.0 36 NNNNNNNNNN ............................. CAATGAAAAATCTTTCTGTGCTTGAGGAAGTATTCT 1451589 29 100.0 39 NNNNNNNNNN ............................. ATGCTTTTTGCATAAAAACCTGCATAAAAGGGAGGTGAA 1451657 29 100.0 38 NNNNNNNNNN ............................. ATCATCAAGATTGCCCACCGCGCATTTCAAGCGGTAGC 1451724 29 100.0 34 NNNNNNNNNN ............................. ATCCATTCGGTTCGCAGTTCTTCTAGCGCTTCGC 1451787 29 100.0 37 NNNNNNNNNN ............................. TCATATCTTCCAAAACCGGAGTACAGTTGGCGTCATC 1451853 29 100.0 38 NNNNNNNNNN ............................. TGAACCACCGAATCCGCCGTTTCTCATCGTATTGGCGG 1451920 29 100.0 35 NNNNNNNNNN ............................. TACGGGGAAGTGATTGAGATGAAAGAAATCGAAAG 1451984 29 100.0 35 NNNNNNNNNN ............................. GGACTTCTCCCGGCGTTTGCAGCTCTCTACATTAA 1452048 29 100.0 36 NNNNNNNNNN ............................. TCGTAAACGTCTTTCAACCAACCAGTGATGATAACG 1452113 29 100.0 35 NNNNNNNNNN ............................. AAAGGAAGAGAAACATTCCGGTTGTTGTTGCAGAA 1452177 29 100.0 34 NNNNNNNNNN ............................. TTGGTTGCGAACATTCTTGGAACGGAGTGTTTGG 1452240 29 100.0 38 NNNNNNNNNN ............................. TTTCACATGTTGGACAGATTCGCTTTTGATCTTTGAGT 1452307 29 100.0 35 NNNNNNNNNN ............................. AGGTGAGAACGAAGTGGCGAAGATCATTCAACTAT 1452371 29 100.0 36 NNNNNNNNNN ............................. ATGCTTGACCTCATATTCAACGCACGCGCGAATCAC 1452436 29 100.0 40 NNNNNNNNNN ............................. TTGAGCCTATATCATTAAATTTAATACAAAATATTTTTGA 1452505 29 100.0 40 NNNNNNNNNN ............................. CTCGTTCATACGCCGAATTATGCTTATACCCTATCGTCAC 1452574 29 100.0 35 NNNNNNNNNN ............................. GATATTGCAACTTAGACATAGGGGAACGACAGTTC 1452638 29 100.0 37 NNNNNNNNNN ............................. AGCCTTCCTTACGTTTCCCTCTACGACCAGCAGGCTT 1452704 29 100.0 39 NNNNNNNNNN ............................. TTGAGCCTATATCATTAAATTTAACAAAAATATTTTTGA 1452772 29 100.0 36 NNNNNNNNNN ............................. GTTCTTTTTCAATGGTTTTCAGCGCTTCCTCAATGC 1452837 29 100.0 36 NNNNNNNNNN ............................. TCAATATCATTTACAGTTTCAATACGTGCAGCTGGT 1452902 29 100.0 35 NNNNNNNNNN ............................. GCTGATACAACCATTGACCAATGATGAACGCACAC 1452966 29 100.0 35 NNNNNNNNNN ............................. GTGCTAGGCTGGCAAGCCGGAAGGCGCAAAGACAT 1453030 29 100.0 36 NNNNNNNNNN ............................. TAAAAAGACATCAATTAGAATTTGATGGATATGATG 1453095 29 100.0 38 NNNNNNNNNN ............................. AAAGATAAAATGCAAATGAGTAATTTAAAGTTTGTTGA 1453162 29 100.0 37 NNNNNNNNNN ............................. GTATTACTAATTAGGCAAAAAGAAGACAGTACAATAT 1453228 29 100.0 37 NNNNNNNNNN ............................. CCGCGACAAGCATGTTCAAATTCGTTGAGTAGATCGT 1453294 29 100.0 37 NNNNNNNNNN ............................. GCGATCGATACGCTCACGTTCAGATTTGGCCAATTGC 1453360 29 100.0 39 NNNNNNNNNN .............A............... CGACTACTAAAATAGCATTTTTCACCTCTTAATCTTTCA 1453428 29 100.0 1 NNNNNNNNNN .........................C... NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 50 29 36 GTTTTATCTGAACGTAGTGGGATATAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.52%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [210,117] Score: 0/0.18 # # Final direction: F [0.41,0 Confidence: MEDIUM] >NC_014650 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1954646 30 100.0 35 ACGACTTTTT .............................. TCGCTCGCTTCTATCGGTTTATCTGTGATGGTTTA 1954711 30 100.0 36 TGATGGTTTA .............................. GGAAGAATGAATTTTTTCCATGGGAAAATCGCGGTG 1954777 30 100.0 35 AATCGCGGTG .............................. CATAACCACCCCTTTAGATTGTTGTTAAATCATTA 1954842 30 100.0 38 TAAATCATTA .............................. AATTCCTTGTTGGAAAGTGTTTTTATTCGTTCTTTTAG 1954910 30 100.0 35 GTTCTTTTAG .............................. CATAACCACCCCTTTAGATTGTTGTTAAATCATTA 1954975 30 100.0 38 TAAATCATTA .............................. AATTCCTTGTTGGAAAGTGTTTTTATTCGTTCTTTTAG 1955043 30 100.0 36 GTTCTTTTAG .............................. TTTTTCACTAATAAAAAAGTCTGGATAGGATTGTTG 1955109 30 100.0 35 AGGATTGTTG .............................. TGTTTTGTATAGAGTTAATGAAAGAACAAAGTTTT 1955174 30 100.0 35 ACAAAGTTTT .............................. ATAAAGTCTCGCTATCGTTCTCGAAACTTGATCGT 1955239 30 100.0 36 ACTTGATCGT .............................. GAACAACGAGCTTTTTTCAGAAAGAATGACAATCGA 1955305 30 100.0 38 TGACAATCGA .............................. GGAGATGTGACAGGAAATGAAGTTTTTTTCGAAGTACA 1955373 30 100.0 35 TCGAAGTACA .............................. TCCGTATGCCGATCTTAAACGCTGGAGATTGGAAG 1955438 30 100.0 39 AGATTGGAAG .............................. CTTTCCTTTTTTGTATCGCGTGACTCTGTGTTCTGCAGT 1955507 30 100.0 35 GTTCTGCAGT .............................. ACCTTATCGGTTCTACGGGTTCCATCACTAGAAGA 1955572 30 100.0 35 CACTAGAAGA .............................. AAATGGAACACGGAAGGTATACTTGCCAATAAGTA 1955637 30 100.0 38 CCAATAAGTA .............................. CGTTCACGAATGTACGAATTTATATTAGTATTTTTTAG 1955705 30 100.0 36 TATTTTTTAG .............................. GTCGAATGACGAACGAAGTGAGGAATGAGACAAGCA 1955771 30 100.0 38 GAGACAAGCA .............................. TCGCCTTTTCTACATCCCAACCCTGCATTCGTACACGG 1955839 30 100.0 37 TCGTACACGG .............................. CGATTTTGTGGAGTGAGGGGGAGAACAAAATGAACGA 1955906 30 100.0 37 AAATGAACGA .............................. TATATTATTACTAGGATGACGAAAACGGGAAAAACGG 1955973 30 100.0 36 GGAAAAACGG .............................. GGAAATGGCTAGTCGAGGACTGAACGAGGATGAAAT 1956039 30 100.0 38 AGGATGAAAT .............................. GGCTTGCGACCGCCTAACCGAGTCGGCTTGCGACCGCC 1956107 30 100.0 38 TGCGACCGCC .............................. ATGCGTTCCATAGAGTCGACTTCGATGTAGGAGATCAA 1956175 30 100.0 AGGAGATCAA .............................. CCCAATAAA ========== ====== ====== ====== ========== ============================== 24 30 36 GTTTCAATTCCTTATAGGTAAGATAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:73.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [159,1928] Score: 0.18/0.18 # # Final direction: R [0,5.05 Confidence: HIGH] >NC_014650 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 3431527 30 100.0 36 CGCAGACCAC .............................. TGTAGATGATTCAATAATTAGAAATCTGTTTAATGG 3431593 30 96.7 37 TGTTTAATGG A............................. TCACATCAGAAAGGAAACGGACAACATATGAAAGAAA 3431660 30 100.0 35 ATGAAAGAAA .............................. GAATTTGGAAAATCAAGAGCGCAATATTCAGCAGA 3431725 30 100.0 36 ATTCAGCAGA .............................. AAACAACCGCAAAGATTTTCTTTCCGTATTTCCAGA 3431791 30 100.0 38 TATTTCCAGA .............................. TCCAACGTCTTGGGCAGGGAAAGAATTGCATTTTCGAG 3431859 30 100.0 35 CATTTTCGAG .............................. GGCGAAAAAGGTAGAGCTTCAGAAGAAAAAAGAAT 3431924 30 100.0 37 AAAAAAGAAT .............................. GCTCGACCGCAACGGCGCCCAGGCGGACCACTTGCGG 3431991 30 100.0 37 CCACTTGCGG .............................. ATTACGTCGTCAATGACCCGTTGGAGTACGCAGAGTT 3432058 30 100.0 38 ACGCAGAGTT .............................. CGCCACCCCGAAAACAAAGGACTCATCGTCCGGTGGGA 3432126 30 100.0 36 TCCGGTGGGA .............................. AAGCAAGACGTACTATTCAACGCGCGTTGAATTTGT 3432192 30 100.0 37 TTGAATTTGT .............................. CACCTTTAAACTTCATGTAGGCGTGGGCAAATTGTTC 3432259 30 100.0 37 CAAATTGTTC .............................. GTTCATCCAGCTGGCGTTGCATATCAAAGAGAACCGC 3432326 30 100.0 38 AGAGAACCGC .............................. ATCGTATCGAAGCGTGAAAATGTAATCTCCATCTTTCG 3432394 30 100.0 37 CCATCTTTCG .............................. TTTCCGTGTATCGCGTTATTTACATATGCACGAAACT 3432461 30 100.0 35 GCACGAAACT .............................. GAGTAGACGAAAGGAGGAATATGAATGGTGAAATA 3432526 30 100.0 38 TGGTGAAATA .............................. AAAAAATCTTTGCTTTCGAAAGCAAAAAATTTTGGCCG 3432594 30 100.0 36 ATTTTGGCCG .............................. ATGGTGGAGTGCCAGTATTAAAGCAGATACTACAAT 3432660 30 100.0 36 ATACTACAAT .............................. CTTCTTGAGAACCACCAAAAATAGCTACTGTTTTCA 3432726 30 100.0 36 ACTGTTTTCA .............................. GTGTGTCCAACTCGTTCTGTTGTTTGGCTCCAGCAT 3432792 30 100.0 38 GCTCCAGCAT .............................. TCGTATATGCTGGCTTATCGAAAGAGAGTCTTCGATAA 3432860 30 100.0 35 TCTTCGATAA .............................. TTTCCGCGTCACCTTCATCGAAATAACTCGGCTCG 3432925 30 100.0 ACTCGGCTCG .............................. CCCAACAAAC ========== ====== ====== ====== ========== ============================== 22 30 36 GTTTCAATTCCTCATAGGTAAGATACAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [303,184] Score: 0/0.18 # # Final direction: R [0,5.55 Confidence: HIGH] >NC_014652 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2613496 29 100.0 38 NNNNNNNNNN ............................. GTATCAGGATACATTCGAACAAGAATTGTTGATATTGA 2613563 29 100.0 37 NNNNNNNNNN ............................. CGCCTGCACTTCTTGTTATTCCTATCATCGCTATCTG 2613629 29 100.0 38 NNNNNNNNNN ......................T...... TGGGCCTGCTTCACGTTGTTGATAGCATTGTTAACCAC 2613696 29 100.0 37 NNNNNNNNNN ............................. AGAATTAAAAAGTATGTCTTTTAAAAACTCTTCTCTC 2613762 29 100.0 37 NNNNNNNNNN ............................. AAGTCCTGCACTTCTCATATTCTCATGGGGTAGCGGT 2613828 29 100.0 36 NNNNNNNNNN ............................. CTGTGATGAGTCAGCAGGGTCTCTTATAACTTTAGT 2613893 29 100.0 37 NNNNNNNNNN ............................. ACAAAACTAAATTACCATTGACTTCTCCCCGCCCTAA 2613959 29 100.0 35 NNNNNNNNNN ............................. AGTAAGGCAAGACTCGTAGAAGATTTGAGAATGTG 2614023 29 100.0 36 NNNNNNNNNN ............................. GCAATATATCGTCGCCTTCATAGACTTCCTGTATAC 2614088 29 100.0 36 NNNNNNNNNN ............................. TTTCAACAAGATTAAATATTTTGCAAACTTAATTGA 2614153 29 100.0 37 NNNNNNNNNN ............................. ATTGTTAATGTCAGTAGCCACTAATTCCACAACACCA 2614219 29 100.0 38 NNNNNNNNNN ............................. CTTTCTTAAGGAGTGATAATTTTGTTAATTGCTTTTGA 2614286 29 100.0 36 NNNNNNNNNN ............................. TGGGCCAGAAGATATTAAATCTACAGAAAGCTAAAG 2614351 29 100.0 37 NNNNNNNNNN ............................. AAAATTCTCGCCAGAAAACATGCCAAAACTCAAATAC 2614417 29 100.0 35 NNNNNNNNNN ............................. TCTAATCTCAATTTTTTCCATTTCTTGTTTTTCTT 2614481 29 100.0 38 NNNNNNNNNN ............................. ACCAAAAATCCTTTCTTTAAAGTTGCAACAATATTATC 2614548 29 100.0 36 NNNNNNNNNN ............................. TTCAACCTTCCAACCGATTGTTGAGTATTGATTCAA 2614613 29 100.0 34 NNNNNNNNNN ............................. CGGTGAAGTATTGTCGCTTTGGTGCTGGAAGAAG 2614676 29 100.0 36 NNNNNNNNNN ............................. AAAACAGAGTCTTGAAGATTTAGAGAAGCGATACGA 2614741 29 100.0 37 NNNNNNNNNN ............................. TCTTCTCCCAAGACAACGTACGGCATAACTGCACCGT 2614807 29 100.0 37 NNNNNNNNNN ............................. AAAAGTCAAGTTGCTAACACTTAATAAATACACATCT 2614873 29 100.0 36 NNNNNNNNNN ............................. TCAACGTCATCAATCAAAAAGTTGAATGCTTTTGCT 2614938 29 100.0 37 NNNNNNNNNN ............................. TCTTGTCAATACCACCCTAATTGTTAACAAATTATGA 2615004 29 100.0 37 NNNNNNNNNN ............................. GCAGCTGGGAATGATATGTGTTGTAGACGAGATAAAT 2615070 29 100.0 37 NNNNNNNNNN ............................. TAGCTGTTGGACCTGCGTGCCAGGCCCTTTCGTTCCA 2615136 29 100.0 37 NNNNNNNNNN ............................. AAATTATTGATGGTTGGAAAAATAAGTTTTTTGATAG 2615202 29 100.0 36 NNNNNNNNNN ............................. ACTACAACGACTTTTACTGTGACAGTTGATACAGCT 2615267 29 100.0 37 NNNNNNNNNN ............................. TGTTTGGAATGCGATTAAGAACGTCTTTCTGACAATC 2615333 29 100.0 36 NNNNNNNNNN ............................. GAGATAGTGAGGGAAAAGACAAGCGGATTTGCAGCA 2615398 29 100.0 37 NNNNNNNNNN ............................. AGCACTCCAGCGCTGAGCTGGGGTGCTGATTTCGTAT 2615464 29 100.0 37 NNNNNNNNNN ............................. AGCACTCCAGCGCTGAGCTGGGGTGCTGATTTCGTAT 2615530 29 100.0 36 NNNNNNNNNN ............................. TCTCTCATCAAGCTCTGCTATCCATTCCCAATCCCT 2615595 29 100.0 36 NNNNNNNNNN ............................. GATGGAGCAGGAAATACTTAAGTTTGTTACGACGCA 2615660 29 100.0 38 NNNNNNNNNN ............................. GATGAGTGAGAAAAACTTCTTTGAAGAACTTTTAGCTG 2615727 29 100.0 37 NNNNNNNNNN ............................. CTCCAATACTTTTAAGTTTGCTTAGCGTTATGCTTGC 2615793 29 100.0 35 NNNNNNNNNN ............................. ACAAAAGCAAGTATGCTAACTGCACGATATCTTTT 2615857 29 100.0 38 NNNNNNNNNN ............................. AGCGCTGTTGCTAATGCGACCAATGCAGATACACTTGA 2615924 29 100.0 36 NNNNNNNNNN ............................. TCTATGATTTTTTTAGCTATTTCCTCTTTCTTTTGT 2615989 29 100.0 36 NNNNNNNNNN ............................. TTCACCTGTTTCCAAGTAACAAAAGAATGTAATATA 2616054 29 100.0 36 NNNNNNNNNN ............................. CCCGTCTATCATCATCGAGCATCAGCTCCTAATCGC 2616119 29 100.0 36 NNNNNNNNNN ............................. AATGCCTCACCTACTTCGTTGAGGTCCTTTAAACAC 2616184 29 100.0 37 NNNNNNNNNN ............................. TTTTGAGTTTGAACATTACGGGCTTTAAAGACAGGTC 2616250 29 100.0 37 NNNNNNNNNN ............................. CTGGAAGGAAATGGGCTTATCACCAGCAGATATGCAC 2616316 29 100.0 37 NNNNNNNNNN ............................. ACAGGCTGAATATGGAGGACAAGCATAATGGAGAATT 2616382 29 100.0 35 NNNNNNNNNN ............................. TGGCAACTTTTAGTGAAAGGCTAAAGAAATTGAGA 2616446 29 100.0 36 NNNNNNNNNN ............................. AATCAGGCAGGACGCAGAAGAACTTAAGAAACTGCT 2616511 29 100.0 37 NNNNNNNNNN ............................. ATTTCTTCTGGCTTAAAGGTTACTATTACCCCACCAA 2616577 29 100.0 37 NNNNNNNNNN ............................. ACAAGTGGTTTTAAACTTGAACGAGCAGGTGGCTTTG 2616643 29 100.0 40 NNNNNNNNNN ............................. ACTGTTTATTTTTGTTTGCAAGCTGTTTTTTTGCTTTTCA 2616712 29 100.0 38 NNNNNNNNNN ............................. TCTGTTGCATAATCTCCAGTCAGCAACAAGTCAATAAT 2616779 29 100.0 36 NNNNNNNNNN ............................. CGAAGCAATAGCTTAGCAATACAAAGCACAGCATAG 2616844 29 100.0 36 NNNNNNNNNN ............................. TATTACCACCTTTACCGTCCCCGGTCCGTTCCAGAG 2616909 29 100.0 37 NNNNNNNNNN ............................. ACTCATCTTTTGTCAGTCTTGGCACATCTTGAACTTC 2616975 29 100.0 36 NNNNNNNNNN ............................. TTCGAGAAGAGCTCCAAGAACTAGAAGAAGCTGAGA 2617040 29 100.0 36 NNNNNNNNNN ............................. AAACAAGAGCTGATGATTTAGCAACGATGATTGTAG 2617105 29 100.0 36 NNNNNNNNNN ............................. CCAGTTATAGGCATTCCTTTGCTAATCATTAAATAC 2617170 29 100.0 35 NNNNNNNNNN ............................. CAAGCACCAGAACAACAACAGTTTATGCTTGAAGA 2617234 29 100.0 37 NNNNNNNNNN ............................. TGTTCAAAAGAATCAATAGCAAATTCGCTTCTTAAGA 2617300 29 100.0 36 NNNNNNNNNN ............................. GTATGTGCTGTAGTTATCACAATATCACTTTTTGTG 2617365 29 100.0 37 NNNNNNNNNN ............................. ACTCATATCCTAAGAACTCTTCATAAGCAATTCCATT 2617431 29 100.0 35 NNNNNNNNNN ............................. GAATGCATTCTCTGCAACATTCTGAGACATGTCCC 2617495 29 100.0 36 NNNNNNNNNN ............................. ATTAAAGAAAGTGTTTAACACGACAATATAATAATT 2617560 29 100.0 35 NNNNNNNNNN ............................. CTTGATGTAAACAAAGTATTAGTAGTCTTTAAAGA 2617624 29 100.0 37 NNNNNNNNNN ............................. CATATAAAAGCCCATAGACAATCAATTTTATGCTTAA 2617690 29 100.0 36 NNNNNNNNNN ............................. AGAATAAGTCCAATTCAAATCCAAACTCTATGAAGC 2617755 29 100.0 36 NNNNNNNNNN ............................. AGAATAAGTCCAATTCAAATCCAAACTCTATGAAGC 2617820 29 100.0 37 NNNNNNNNNN ............................. AGTATTTTCTTGTTGCAATGTAAGTATCATCATAAGC 2617886 29 100.0 37 NNNNNNNNNN ............................. CATCGTGTATTCTCTCTAACTGATGCAGTTTTAATGC 2617952 29 100.0 35 NNNNNNNNNN ............................. TTAATCATTGATGATTTAGGAGCTGAAAATGAGAC 2618016 29 100.0 36 NNNNNNNNNN ............................. TTCTACCGCTCTTCTTCCTTTGCGATAAACAACCCA 2618081 29 100.0 37 NNNNNNNNNN ............................. AAGCAGAAAGAGCACAAGGTTAAGCGAATAGTGGACA 2618147 29 100.0 37 NNNNNNNNNN ............................. TTAAAAAGCTTTTAGGCTTGCAAGCCAACAACAAAAT 2618213 29 100.0 37 NNNNNNNNNN ............................. TTCTGAAGCTGAATCAAAAATTGGGCAAGCACAATAA 2618279 29 100.0 37 NNNNNNNNNN ............................. AGTATCAGATTGGCAAGAAAATACCCAGACTTTGGAC 2618345 29 100.0 36 NNNNNNNNNN ............................. CAACAGCAGATAGGCAGACTTTTATCGTGCTTTGCA 2618410 29 100.0 36 NNNNNNNNNN ............................. CATTGCCTGACTGTAAGCATTAATCACAGCTGCTAT 2618475 29 100.0 38 NNNNNNNNNN ............................. CTTTCTAAAACTTTACCAAACTTCTTGCTAACATACTC 2618542 29 100.0 37 NNNNNNNNNN ............................. TAGCATTTAAGCAAAGCTATGTTTCGTATGCACAGAT 2618608 29 100.0 37 NNNNNNNNNN ............................. AAGAAATCAATCAACGTTACCATAAACGTTGAGAAAA 2618674 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 80 29 36 GTTTACATCCCTAATAGTTCAGATAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.97%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [71.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2095,206] Score: 0.18/0.18 # # Final direction: R [0.18,1.05 Confidence: HIGH] >NC_014650 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 590718 30 100.0 37 ATTGAGTTTA .............................. GCGCAGCCCTTAAGAAACTCCCCAGGCTTATACGGAA 590785 30 100.0 37 TTATACGGAA .............................. AATAGAAAGATGCAAGAACAAGACCTATTCGACCCTA 590852 30 100.0 35 TTCGACCCTA .............................. TATTTGAGCCGACTTCCGCCAGTTCTTTGAGGTCA 590917 30 96.7 38 TTTGAGGTCA ..........T................... TTTTTCTGGCGTACTTCGTTGCGCTCGTTGTGGACGAG 590985 30 100.0 35 TGTGGACGAG .............................. AATATTAGGCCATTACCTTTTGATTTTGCGATATT 591050 30 100.0 35 TTGCGATATT .............................. GAACACGATTGGCTTTTGTTTTCTGTAGCGTTCGT 591115 30 100.0 35 TAGCGTTCGT .............................. TCATCGAACTTCGCTGTCGGATACAAAGCTTTCAG 591180 30 100.0 37 AAGCTTTCAG .............................. GAATTGCCTATTGGGCTGCGGAAAAGGGACTAAAACA 591247 30 100.0 36 GACTAAAACA .............................. AATTCTAATCCCATATGGTGAATGGGCATTAAATAT 591313 30 100.0 37 CATTAAATAT .............................. TTGCGATTCTTGACGAAATGGTAAAAGAATATTCGGC 591380 30 100.0 39 AATATTCGGC .............................. TGCTTTGAAACATTGTCCTAACGGCATGCCTTTGCTTAT 591449 30 100.0 38 CTTTGCTTAT .............................. CAAGTTAGTGTCCTTTTTGCACTCATTGCAGTAGTCGT 591517 30 100.0 36 CAGTAGTCGT .............................. CTATTATTATGGCACGCTCTATGGCATGGTATACGA 591583 30 100.0 36 TGGTATACGA .............................. CGAAAAATCAAACCCGGCTGGTTTGTTTCGCCGGTG 591649 30 100.0 35 TTCGCCGGTG .............................. GAATTCAATCAATGCTTTTTTAGATAGAATTTCAG 591714 30 100.0 36 AGAATTTCAG .............................. CACTTCTGACGCTTGTGCTTGCGCTACCTGTTGGTC 591780 30 100.0 37 CCTGTTGGTC .............................. GATGAACGGTGAAAAGCAGATGAAATCATTATCCGTT 591847 30 100.0 36 ATTATCCGTT .............................. CTCGGAGGGATTGGTTGGGGCATTCGGATTGAGTTG 591913 30 100.0 GATTGAGTTG .............................. CCCAAAAAGC ========== ====== ====== ====== ========== ============================== 19 30 36 GTTTCAATTCCTTATAGGTAAGATACAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [254,266] Score: 0/0.18 # # Final direction: R [0,5.28 Confidence: HIGH] >NC_014652 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2705174 30 100.0 36 CCATCTACGG .............................. AAAACTAAGATTTGGGCTTGAAGGAGGAAGAGTTCA 2705240 30 100.0 36 GAAGAGTTCA .............................. TAGCGTCAATAAACAGAAATTGGTTGTTAGGGTCTT 2705306 30 100.0 35 TTAGGGTCTT .............................. AACATTAATGAAGGTAATATAGAAATAGCTTTTGA 2705371 30 100.0 36 TAGCTTTTGA .............................. AAAATACTATAGCAGAGCTCAGGCGATTGAAAGCTA 2705437 30 100.0 36 TTGAAAGCTA .............................. ACTTTTCACTTGCTCTTTCATATAATCTAATACAGT 2705503 30 100.0 CTAATACAGT .............................. ATATGCTAAA ========== ====== ====== ====== ========== ============================== 6 30 35 GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [5,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-7.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [63.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [538,40] Score: 0.18/0.18 # # Final direction: F [4.95,0.74 Confidence: HIGH] >NC_014652 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2722390 29 100.0 36 TAATATTTTA ............................. CCTAAGTCTTTTCAAACGATAAGCAACCGTATCTTC 2722455 29 100.0 38 CCGTATCTTC ............................. TGGTAGTTGTGAAGCTATGCATAGACTGCAAGCACTGC 2722522 29 100.0 37 CAAGCACTGC ............................. CGTTGGCAGAGATGAGAACGGTAAACGTCGACAAAAA 2722588 29 100.0 37 TCGACAAAAA ............................. TTACGTCCTCTGCAGGTATTCTCAAGACCTCACCGTT 2722654 29 100.0 37 CCTCACCGTT ............................. TTTGTCTCTGTAAATAAATCCTTTGTCTAATAGCCAC 2722720 29 96.6 35 TAATAGCCAC .......................C..... TCGTCATCAACAACAAACTCAAATGTCAGCAACTG 2722784 29 100.0 37 TCAGCAACTG ............................. ACAACACTACCAGAAGGTGCAGAAATCAAATTTTACA 2722850 29 100.0 37 AAATTTTACA ............................. CCATGCCTTCTATGAGAATTGGAATAGCTTGTGCTGC 2722916 29 100.0 38 CTTGTGCTGC ............................. TGCTAACTGAAAACGGAGAGGTAAAGCTGTATGATGTC 2722983 29 100.0 36 GTATGATGTC ............................. CATAGCAGTCGCACAGGCAATCACTGGACTGATACA 2723048 29 100.0 36 GACTGATACA ............................. TTTGGCGAAAGTTGTTCCAGCAAGCGGTGCGGTTAT 2723113 29 100.0 37 GTGCGGTTAT ............................. TAGCCTTGTATCACTCAGAACTGGTCAAAACAATGCA 2723179 29 100.0 37 AAACAATGCA ............................. TCATCCATCTTAGCCTTCATGGATGGATGGAACATAC 2723245 29 100.0 35 TGGAACATAC ............................. TGCGCATGTATTAGCAAGAGCAATAAATAGATTTG 2723309 29 100.0 37 AATAGATTTG ............................. CAATGCCTGTGCTTGAGCTTATAAATACAACAAATCA 2723375 29 100.0 38 CAACAAATCA ............................. TGGAGTCTACAGAAAAGCAGGAACTAAAGCAATAGGGC 2723442 29 100.0 36 GCAATAGGGC ............................. CAGACTTTGCGATATGCAGCTCAGCTACACAGATTT 2723507 29 100.0 37 ACACAGATTT ............................. TCAATTAAGAACATGGACAGCTAATTATGAAGTATTA 2723573 29 100.0 37 TGAAGTATTA ............................. GAGAAGAGTATGTGATTACTTATAACTTTTTCCCTGT 2723639 29 100.0 35 TTTTCCCTGT ............................. TAAGTCTGCCGTCTTTAATCATGTTATATACTGAT 2723703 29 100.0 37 ATATACTGAT ............................. TGATAAACAAGTTAAAACAAGGAGTGAAATTCAATCA 2723769 29 100.0 37 AATTCAATCA ............................. CTGCTGCATGAATGCCGTTGCGGTTTAACGTCCCGTC 2723835 29 100.0 36 ACGTCCCGTC ............................. ATAGAAATAAGCAGAACAGAATATAAAGCTTTGAAA 2723900 29 100.0 37 AGCTTTGAAA ............................. ATATTACATTAACTATAGACAGTTACAATTTTTCTAA 2723966 29 100.0 36 ATTTTTCTAA ............................. CTGTTCATATCGTTGCAGCCTTTCAAGTTCGCTACT 2724031 29 100.0 36 GTTCGCTACT ............................. GAGGTGAGGCAAAATGACATAAAAAAATAAGCCCGC 2724096 29 100.0 38 ATAAGCCCGC ............................. TAAAACAATTTGTATATTTGTGAGATATAAATTGTAAT 2724163 29 100.0 38 AAATTGTAAT ............................. ACTTCAGCATCTAAAAGGAATTCAGCTTCTGTAAACTT 2724230 29 100.0 38 CTGTAAACTT ............................. CACGGACGATGACTATGAAAACATAGCTTTATATCTTT 2724297 29 100.0 36 TTATATCTTT ............................. TCTACGCTGCAAATGCGATTGGCGATGACACTACTC 2724362 29 100.0 36 GACACTACTC ............................. CCAAATCAAAGAAGAAAGCATTGCTGAACTAAGTAG 2724427 29 100.0 37 AACTAAGTAG ............................. AAGGATTAAACGCTGTTTTAGCGCTCACTTCTGAACA 2724493 29 100.0 36 CTTCTGAACA ............................. AGACGCACCAAGACTTTTAAACAACACTTCAATGTT 2724558 29 100.0 37 CTTCAATGTT ............................. CTCCAAAGAAGTTCGCAAGTTTTATCTTGATGTCATC 2724624 29 100.0 37 TGATGTCATC ............................. AAAGAAATAAAGAAAGCAGTTGAAAAGTTAACAAATA 2724690 29 100.0 38 TTAACAAATA ............................. TTATAAATACTTTATTGACATAAGAATGGGGGCAAAGC 2724757 29 100.0 36 GGGGCAAAGC ............................. ACAGGACAGAAATCGAAACTGTGTTTAAAAAAGCAG 2724822 29 100.0 37 AAAAAAGCAG ............................. TGCCTTTTGATGTTAAACATGACGCAGTAGAACCTTT 2724888 29 100.0 37 TAGAACCTTT ............................. CCATGATTGCTTTGCCAAATTTGCCTGTTTCGAAGCG 2724954 29 100.0 35 TTTCGAAGCG ............................. ACGCAAGTAGCGCAACAATATATGATATACACCGC 2725018 29 100.0 38 TATACACCGC ............................. TAAAAATTGAAGTGAAGGGCATACAAGAAACAGTTGAT 2725085 29 100.0 39 AACAGTTGAT ............................. CTTTGTCTTCTCTGTACTTGTATGTTTGAATTTCTTTGA 2725153 29 100.0 38 ATTTCTTTGA ............................. TTTCCTTTTTCACTGCCGTTTGATGTTGCGTATTTGGT 2725220 29 100.0 38 CGTATTTGGT ............................. CGCTGAAAATTGAATACCTAAAGCATCTGCAGCTTTTT 2725287 29 100.0 36 GCAGCTTTTT ............................. ATACCAGCTCTGTTTAAAGGTGTCCAGTCAATGCTA 2725352 29 100.0 36 GTCAATGCTA ............................. TGCTTGGTACTACTAATCAGGATATTAATTTTATCA 2725417 29 100.0 37 AATTTTATCA ............................. CGGAAATGAATATAATTAATCCAAATCTAAAATTCAA 2725483 29 100.0 37 TAAAATTCAA ............................. GCCGCCGATGGTGCCGTGTCGCTGTAACAATGTGTCA 2725549 29 100.0 36 CAATGTGTCA ............................. TGAAATACACAACAAATTATAATCTTAAAAAGCCTG 2725614 29 100.0 36 AAAAAGCCTG ............................. TGGGAACACTTCAAACAAGCTTACAACACAGCATAT 2725679 29 100.0 CACAGCATAT ............................. CCACCAAATT ========== ====== ====== ====== ========== ============================= 51 29 36 GTTTACATCCCTCATAGTTCAGATAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.52%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [155,676] Score: 0.18/0.18 # # Final direction: R [0,0.59 Confidence: HIGH] >NC_014652 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2733415 30 100.0 36 CCATCTACGG .............................. TTCAATATGGTTTTTAAAAAAATTTTATATTTTCGG 2733481 30 100.0 36 ATATTTTCGG .............................. TGGAGTAGGGCACAAAGCCCTACTCCAAAAATTCTG 2733547 30 100.0 36 AAAAATTCTG .............................. ATAGAAAGACAATGCAAGTTATGAATACAGAAGTCA 2733613 30 100.0 36 ACAGAAGTCA .............................. TCCATTTGTAGCACCTCACTTGTTACAATTTGTAAA 2733679 30 100.0 35 AATTTGTAAA .............................. CAGAATGCCACTTAACATTATCCTTGTCCCAGAAA 2733744 30 100.0 36 GTCCCAGAAA .............................. TCATCATAGATTTTTACTCTGTTTATCATGTTTTCC 2733810 30 100.0 35 CATGTTTTCC .............................. CAAGGATTTAACGTATTTGATAATTCTATTCGTAA 2733875 30 96.7 34 CTATTCGTAA .............................G AAAGACGCACCCTCAGGCAACTCTGTAGCACCTG 2733939 30 100.0 GTAGCACCTG .............................. GGTAAGAGGG ========== ====== ====== ====== ========== ============================== 9 30 35 GTTTGTAGCCTCCCCTTTGGGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-7.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [393,262] Score: 0/0.18 # # Final direction: F [4.91,0.37 Confidence: HIGH] >NC_014654 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1666592 37 100.0 36 TTTTCACGTG ..................................... TTTCAATCTGTAAAGTATAATGTAACTAGGACTTAA 1666665 37 100.0 37 TAGGACTTAA ..................................... CCTGGCCCGGCTCTACTATTTGCTCTAGTTTACGAAA 1666739 37 100.0 36 GTTTACGAAA ..................................... CTAAAGATTTTAGCAGCTATGCAAATACAGATTACA 1666812 37 100.0 35 ACAGATTACA ..................................... CCAAAATATCTTTTTGCGTTCTCGGCGTTTTTTTC 1666884 37 100.0 37 CGTTTTTTTC ..................................... CCTTGAGAGTTTTCGAATTGACTTATCTGGTCTTTAA 1666958 37 100.0 37 TGGTCTTTAA ..................................... TCATCATCTTGATCCTGATCGTCCATCTCATCCAGAT 1667032 37 100.0 36 TCATCCAGAT ..................................... GAATAACGATGAAGAGCAGACTGATCTCGATCCGAT 1667105 37 100.0 35 TCGATCCGAT ..................................... AAGTTCTCCATTTACATCTGGGAAATATCCATTTT 1667177 37 100.0 37 TATCCATTTT ..................................... TTTTTGTAGGATTTTATAATGCAATTGGGAAATTTCG 1667251 37 100.0 36 GGAAATTTCG ..................................... CTATAACTTCTCGCTGGATAGTTCTACCTAATTCCT 1667324 37 100.0 36 CCTAATTCCT ..................................... TGTTTTATAACACTTGTCAAAATATTTAAGTTATTT 1667397 37 100.0 34 TAAGTTATTT ..................................... ATGATGGACAATTAAAAAAAACTTTTGAATCCTT 1667468 37 100.0 37 TTGAATCCTT ..................................... CCATTCGTAGTTGTTTTCTATGATAGGAGTATCACAC 1667542 37 100.0 34 AGTATCACAC ..................................... TTATCCATAGACACATAGCCCTCATATGCACCAA 1667613 37 100.0 37 TATGCACCAA ..................................... AGGGTTTATATCGTGGCGAGAGCTACTCAGATATGTC 1667687 37 100.0 36 CAGATATGTC ..................................... TAATATACAGACACCTTTTGCTATGTTAACAAAATA 1667760 37 100.0 37 TAACAAAATA ..................................... AAGCTAGATGTAGGCAGGGTTTTATACTTTAATGCAT 1667834 37 100.0 37 TTTAATGCAT ..................................... AATTAAGCAGTAAAGCATGGAATTCACTTTATATGTG 1667908 37 100.0 37 TTTATATGTG ..................................... ATTGCCATCTGTTATTCCTCCTATATATTCAATATTT 1667982 37 100.0 34 TTCAATATTT ..................................... TTAGTTGAAAATTCTTATGCAGCTTCACCTATAT 1668053 37 100.0 36 TCACCTATAT ..................................... AAGATGTTTTAATTGAGAAAGGACAAATGCTAGAAA 1668126 37 100.0 35 ATGCTAGAAA ..................................... CTACTTGACCTTTTTTCATAACTTAACCACCTCCT 1668198 37 100.0 36 ACCACCTCCT ..................................... TAACAAACATAAGAGGGATAAGGATAATTATGCTCC 1668271 37 100.0 35 ATTATGCTCC ..................................... AAGATAGCTGAAAGCCGAAAGCGTCTACGAGAACA 1668343 37 100.0 35 TACGAGAACA ..................................... TCGCAACAAAGTCAGCCCAAACCACCAACAACCAA 1668415 37 100.0 35 CAACAACCAA ..................................... TACTAACCACTCATCGCCGCCATTAACCTGATTGA 1668487 37 100.0 35 ACCTGATTGA ..................................... TCATCAAGTGGTTTGGCTTGTTGTGTAGCAGCGAA 1668559 37 100.0 35 TAGCAGCGAA ..................................... TTTCTTTCATCTGGCATCATTTAATCTCCCTTCAT 1668631 37 100.0 35 CTCCCTTCAT ..................................... AAGCCATGTGCTTATCCAGGATGCCCTAAATTAAT 1668703 37 100.0 35 CTAAATTAAT ..................................... CTAAGATTGGATATTGATGACGAAGAAATGCTAAT 1668775 37 100.0 36 AAATGCTAAT ..................................... TACCTCCCAGTCTTCTGGAAGGCTCATTATATAAGC 1668848 37 100.0 35 TTATATAAGC ..................................... CAATGCAACAACTTCTCATCCATCTTATGTTGTGC 1668920 37 100.0 36 TATGTTGTGC ..................................... ATATTCCAAGAAATTAAGAGGATAACAGGAAAGGGG 1668993 37 100.0 36 AGGAAAGGGG ..................................... TACTTTACCTACTTTGTTGTACTTTTTAAGCTCCTG 1669066 37 100.0 36 TAAGCTCCTG ..................................... AGTGAGCCTCTCCGTCTTCCCCGACCTTGATAGCTT 1669139 37 100.0 36 TTGATAGCTT ..................................... AATGGTAGCTGCTTTTATTGATGATAACAAGCCTGA 1669212 37 100.0 36 ACAAGCCTGA ..................................... CCTATCAGGTTCGCCTTGTTGATACCCTGGTTGCCA 1669285 37 100.0 37 CTGGTTGCCA ..................................... TCAGTTTCCCAAACTAACCTCGTTACTCCTCCAGCCA 1669359 37 100.0 36 CCTCCAGCCA ..................................... AATTAATTATGAAAAAGAATGGTGTTATTTATTTAA 1669432 37 100.0 35 ATTTATTTAA ..................................... TGATTCAGCATCGCCACGAAGCAATCCTTCAACAA 1669504 37 100.0 37 CCTTCAACAA ..................................... TAAGGTGGTGAAGGATTGATGAGATTTAAGTCTTTAA 1669578 37 100.0 35 AAGTCTTTAA ..................................... TTTAATAATTCATTTTCAATTTTTCTTTTTAACTT 1669650 37 100.0 36 TTTTTAACTT ..................................... AGAGTGCTAATAACGGAGGAACTGTTGAGCTTACAT 1669723 37 100.0 36 GAGCTTACAT ..................................... CAAGCTCGTCCCTATTATCATCAAAACCACCTCTGA 1669796 37 100.0 36 CCACCTCTGA ..................................... TAATAGGGAGTCTTGTGTAGTCAAATACTTTTGAAA 1669869 37 100.0 35 ACTTTTGAAA ..................................... AGCGAGCCGGCTAACTCATCTATTACTACAGGCAA 1669941 37 100.0 36 CTACAGGCAA ..................................... CAGATATGATGGCCTGGGCTATACTACACAGGATAT 1670014 37 100.0 35 CACAGGATAT ..................................... CACGATTATAACTGCAGAGATCGCAATGGCAATCT 1670086 37 100.0 ATGGCAATCT ..................................... CCGTTACGAC ========== ====== ====== ====== ========== ===================================== 49 37 35 GTTTCAATCCTTATTTTAATGGATTAGTCATTGGAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.40,-2.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [154,260] Score: 0/0.18 # # Final direction: R [0.37,4.5 Confidence: HIGH] >NC_014655 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================================= ====== 1938840 49 100.0 29 CGCAAAACAG ................................................. CTTTCAAATAATACAAACCGTCATCGTAA 1938918 49 100.0 30 GTCATCGTAA ................................................. TTAGAGATTACTTATTGGAAAGGCCAAAAC 1938997 49 100.0 30 AGGCCAAAAC ................................................. CGCGCTATCGTTGGTGGATAAAATCAGATT 1939076 49 100.0 30 AAATCAGATT ................................................. TTTGTGATGAAATTCCCAAATTGCAACATG 1939155 49 100.0 30 TTGCAACATG ................................................. TGCTTTCCAGGTCACCTTCAAGAATGTAAA 1939234 49 100.0 30 AGAATGTAAA ................................................. TATGCTGTTCCGTTGGAATGGCAGCGAATA 1939313 49 100.0 29 GCAGCGAATA ................................................. ATTGCTAAATCTTCTATTTCAGACATAGA 1939391 49 100.0 30 CAGACATAGA ................................................. ACAGTGCAAGGGTATATATACAAAGCGGTT 1939470 49 100.0 30 CAAAGCGGTT ................................................. ATTCTCCTCCGGATTAATTTTTCTTGTGAT 1939549 49 100.0 30 TTCTTGTGAT ................................................. GAATGCTGACGGCTCAATCTACTTTGACAC 1939628 49 100.0 30 ACTTTGACAC ................................................. TTCTCTATCAAATTCCAGCTTTTCGGCGAG 1939707 49 100.0 29 TTTCGGCGAG ................................................. GGAGTTATTAAAGGTGCCGTCTTTAATTG 1939785 49 100.0 30 TCTTTAATTG ................................................. GGGGCAGACGGTAAGGACGTCGAGCATTTT 1939864 49 100.0 30 CGAGCATTTT ................................................. GCAAGAATTACTTGCAGTTGCAAAGTTAGC 1939943 49 100.0 30 CAAAGTTAGC ................................................. CTTTGGACTCAGGATAATTAGAAATAATAC 1940022 49 100.0 30 GAAATAATAC ................................................. TTATCCAGTCGATGTACCCTTCTGGAGTTA 1940101 49 100.0 TCTGGAGTTA ................................................. GCCTTGTATT ========== ====== ====== ====== ========== ================================================= 17 49 29 GTTGTGAATTCCTTTCAATTTTTAGTAACTTTATGATTACTGTCGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:69.39%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.10,-2.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [964,863] Score: 0/0.18 # # Final direction: R [0.27,4.87 Confidence: HIGH] >NC_014655 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================================= ====== 1936734 49 100.0 30 GAAGCAACAC ................................................. GCAACAGGTTCAGGAAAATCCGTTCAGATT 1936813 49 100.0 30 CGTTCAGATT ................................................. TTTGCCGGCCCTCCCTAATTTTGGAAATGT 1936892 49 98.0 30 TTGGAAATGT ...................................G............. TTTTTGCGTAGTTCTTCTACTGCCAGCTGG 1936971 49 100.0 30 TGCCAGCTGG ................................................. ATTTCCGGCGAGTGTAGCAAGCGCGGTAGA 1937050 49 100.0 30 GCGCGGTAGA ................................................. TTACAAACCAAAATATGCCTCTTTCCTACC 1937129 49 100.0 30 CTTTCCTACC ................................................. GAAGTGCTTTTGAGCAGTAATTTGCGCGTC 1937208 49 100.0 30 TTTGCGCGTC ................................................. CTGCTTCCGTGACCGCTTCTGCAATAATCC 1937287 49 98.0 30 GCAATAATCC ...................................G............. AAAAGGAGAATAAAGAAGCTCTTTCCAGGC 1937366 49 100.0 30 CTTTCCAGGC ................................................. AATAGATGCTTATTTTAAGAATGAGTACAA 1937445 49 100.0 ATGAGTACAA ................................................. AAAGAGACTTAAAGGCAAGCATTTTTAAA ========== ====== ====== ====== ========== ================================================= 10 49 30 GTTGTGAATTCCTTTCAATTTTTAGTAACTTTATGATTACTGTCGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:69.39%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.10,-2.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1090,119] Score: 0.18/0.18 # # Final direction: R [0.18,5.14 Confidence: HIGH] >NC_014656 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1827 29 100.0 32 NNNNNNNNNN ............................. CACTGGAGTTCGTGGACATGGACGCGGCCGAC 1888 29 100.0 32 NNNNNNNNNN ............................. AACGAGCCGAACAGGGAGCCGATCTTACCCAA 1949 29 100.0 32 NNNNNNNNNN ............................. GATATCGTGCAGGACACGAAGTGGTTCGCGTA 2010 29 100.0 32 NNNNNNNNNN ............................. CATTCGGCAACGGCGGCAAAATCGGCAAATCA 2071 29 100.0 39 NNNNNNNNNN ............................. GCGAATCTGGACGCGAAGCTGCGAGGCACGATGGAGACC 2139 29 100.0 32 NNNNNNNNNN ............................. GAAAAGCTCTGGAACGTGGAGTTGCTGCCGTA 2200 29 100.0 32 NNNNNNNNNN ............................. ACGTGGCTCCCGAGGCTCGCGTGCATCTCAAC 2261 29 100.0 32 NNNNNNNNNN ............................. ATGAGGTCACCGACCCTGGCAAGCCGCTGGTA 2322 29 100.0 32 NNNNNNNNNN ............................. TCGTCGCGTCCCCTGAAGTCCCCTAGTACTGG 2383 29 100.0 32 NNNNNNNNNN ............................. GGCGACAAGCAACGGATAGTGCCTATATCGGA 2444 29 100.0 32 NNNNNNNNNN ............C................ GCGGTGACAGCGCAAGACACGTTAGCCACGAA 2505 29 100.0 31 NNNNNNNNNN ............................. GAAATCAGCGACTTCCTCTCGCTGGCAACAA 2565 29 100.0 1 NNNNNNNNNN ............C......T..ACTG.GC NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 13 29 32 GTTTGCCCCGCATGCGCGGGGATGATCCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [175,38] Score: 0.18/0.18 # # Final direction: F [0.59,0.37 Confidence: LOW] >NC_014656 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2265338 29 100.0 32 AAATCGGACT ............................. GACAAGGTAGGCAAGGCGTCGGTTGCTGCCGG 2265399 29 100.0 32 TTGCTGCCGG ............................. ATGTTCGTGTCGAACGTGCCGGCCGGCAGGGT 2265460 29 100.0 32 CCGGCAGGGT ............................. GTGATGGGCAGGTTGCCGCCGGTCCAGGTGAG 2265521 29 100.0 32 TCCAGGTGAG ............................. TCCACGTTGTCGATGACACCGGTCATGCAGGC 2265582 29 96.6 32 TCATGCAGGC ............................T GCGGGAAATCGCAGCTGGTACGCGGTGTGCAC 2265643 29 100.0 32 CGGTGTGCAC ............................. GACCGGCCATGAAGCCACGCTGCATCCTGTGC 2265704 29 100.0 32 CATCCTGTGC ............................. TGCTCTCGTAGCCGACGCACGTGCTCTCACGC 2265765 29 100.0 32 GCTCTCACGC ............................. TGGTTTTCGGTTTGCTTTACCCATGTTTTAAA 2265826 29 100.0 ATGTTTTAAA ............................. TCCATTGGAG ========== ====== ====== ====== ========== ============================= 9 29 32 GTTTGCCCCGCATGCGCGGGGATGATCCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [55.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [527,91] Score: 0.18/0.18 # # Final direction: F [0.45,0.37 Confidence: LOW] >NC_014656 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 4173 29 100.0 32 CGGCCGCAGG ............................. TTTTGGGGGTCAAGAATTTCATCTTCGGACAT 4234 29 100.0 32 CTTCGGACAT ............................. GAAAGCGCGGCCGTTTGTGACGCCCTACGCGA 4295 29 100.0 32 CCCTACGCGA ............................. GCGTCGAACAGTTCCGATTGGCTTGGTTCCTC 4356 29 100.0 TTGGTTCCTC ............................. TAACCTCCCC ========== ====== ====== ====== ========== ============================= 4 29 32 GTTTGCCCCGCACGCGCGGGGATGATCCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [35.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [145,419] Score: 0.18/0.18 # # Final direction: R [0,0.82 Confidence: HIGH] >NC_014657 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2367885 29 100.0 37 CTCTCTACGT ............................. TAGGTATAACGGCACAAATTTTATCTTACAGGGTAGC 2367951 29 100.0 37 ACAGGGTAGC ............................. TATTGTCGTCTAAATGGTTTAGATACGCTGTTACATA 2368017 29 100.0 38 CTGTTACATA ............................. TTATCAAAAGAAGCGTTGTGGGCTATCAAAGGATATTT 2368084 29 100.0 35 AAGGATATTT ............................. TTCCGACGTGCGCAAAAGAGTGGACTTTGCAATGG 2368148 29 100.0 38 TTTGCAATGG ............................. TTCCAGAGAGGGCCGTCCCTCTCTGGTTTTCATAACAA 2368215 29 100.0 38 TTCATAACAA ............................. TCTGAAGCTGCTTTTATCAAAGACAGAGTATATCATGA 2368282 29 100.0 38 TATATCATGA ............................. TTTGCAACTGTTTGGAATGCAATCAAGAATGTTATTTG 2368349 29 100.0 36 ATGTTATTTG ............................. TTCGGCTTGCCACTTATCCTAAAACTCTCAATAACC 2368414 29 100.0 37 CTCAATAACC ............................. TTGTATATCACACTTAGGACAATAAACGTTCAACTCG 2368480 29 100.0 39 GTTCAACTCG ............................. CATCTGCAAGTTGTGAATGAAGACCCGCAATCTTCTACG 2368548 29 96.6 38 ATCTTCTACG ...T......................... CAGTTGTTGCGCAGGATGTTGCTGGCTGGAGAATACAG 2368615 29 96.6 37 GAGAATACAG ...T......................... CAAAGCCAGCAGGCAATAACATAGTCCTGCGCTTCAG 2368681 29 96.6 38 TGCGCTTCAG ...T......................... CGTAGGATTAATAATATTATTATTCTTTTCTTTACTTG 2368748 29 96.6 39 TCTTTACTTG ...T......................... CCCACCTCAAACTTGTGTTCTGTTCTGATTATACCACCG 2368816 29 96.6 38 TATACCACCG ...T......................... CGCCCTTATCTTCAGCCCTTGCTCATCTTTGATAAGCG 2368883 29 96.6 36 TTGATAAGCG ...T......................... CCGCAATGTGAGTTTAAACCATCTAAGCTGTTTGAG 2368948 29 96.6 37 GCTGTTTGAG ...T......................... CCACCGAAACCGTAACGGGAAATACACAGGTAAACTG 2369014 29 96.6 36 AGGTAAACTG ...T......................... CAGTCGGCGGCGGATGTATTCTACCGCTAATGCTGC 2369079 29 96.6 CTAATGCTGC ...T......................... CAGGAGGTCGCGCTTGTTTTTTTCGTACCACTCCTTG ========== ====== ====== ====== ========== ============================= 19 29 37 GTTCGTAGCCTCCCCTTTGGGGATTGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [5,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-7.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [535,828] Score: 0/0.18 # # Final direction: F [4.77,0.74 Confidence: HIGH] >NC_014657 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2382387 30 100.0 36 CTCTCTACGG .............................. CAAATCAAATTGTCTCAAATATTTTTGCCTTTCTAA 2382453 30 100.0 37 GCCTTTCTAA .............................. TAAAAAGTCATTCCTCCACCCCTTAGTATCCCCAATC 2382520 30 100.0 37 ATCCCCAATC .............................. GAAAATCCAAATGCGAAGGAAACTCTCATGCAGGTTA 2382587 30 100.0 35 ATGCAGGTTA .............................. ATATTATTCTGTTCCTGTTTCTGTTCCGGCGATGG 2382652 30 100.0 37 CCGGCGATGG .............................. TTCTTTGGATGAGGTTTCAAAAGCGTCGTCTTCACCA 2382719 30 100.0 36 GTCTTCACCA .............................. TGATGATTTCGTAGCTGAAATATCCTGCACCTGCAA 2382785 30 100.0 36 GCACCTGCAA .............................. TCCTTGAAACACCAGAATACAGGAGCGCATTTTTCG 2382851 30 100.0 35 GCATTTTTCG .............................. AAATATTTTGCTTGGTCAATCACAAGTGTTCTTTG 2382916 30 100.0 GTGTTCTTTG .............................. ACAAACCACCGATTTTTTTTGAATTTTTTTCACTGTAA ========== ====== ====== ====== ========== ============================== 9 30 36 GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.30,-4.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [620,351] Score: 0/0.18 # # Final direction: F [4.87,0 Confidence: HIGH] >NC_014657 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 91068 29 100.0 36 NNNNNNNNNN ............................. TACCCAGAAGCGCATAAAAAGCCAAATCGCTCTTGT 91133 29 100.0 35 NNNNNNNNNN ............................. TCGATGAAGCTGGTGGCGTAGGGCTTGGCTTCGAG 91197 29 100.0 39 NNNNNNNNNN ............................. GATACGTCAAAGAAATCACGCTGGAAGTTGATGCCTATT 91265 29 100.0 38 NNNNNNNNNN ............................. GCGCTAAAGATTGACAATACTCTTCTATTAGCCCACGG 91332 29 100.0 36 NNNNNNNNNN ............................. TACTCTTGTATTTTGAATCTAAACCTTACAACACCA 91397 29 100.0 37 NNNNNNNNNN ............................. ATGTAATTACAGTGGCATTGCATATTGCAATGCTTCG 91463 29 100.0 37 NNNNNNNNNN ............................. GTTGTTTAGCTCATCCCTTATCCAATCCATGAGTGGC 91529 29 100.0 37 NNNNNNNNNN ............................. AGTGAATTGATTGAAAAGAGAGAACAAGAAGATAAAA 91595 29 100.0 40 NNNNNNNNNN ............................. GTAACATGTGTTGTTGTCGTTCGCCTCGACAGAATTGTTT 91664 29 100.0 36 NNNNNNNNNN ............................. TTATAAGTCCCTAACCCATCGCACTTGTAAATCGTG 91729 29 100.0 37 NNNNNNNNNN ............................. TGCACAATGCAGGGGGCTGTTTTGGTATATACAAACA 91795 29 100.0 37 NNNNNNNNNN ............................. AAATGGTCTTATAAGCAGAGAGACAGCACTAAAGAGG 91861 29 100.0 38 NNNNNNNNNN ............................. GCTCATTGACTATAAAACAGACTACGGTCTGGTAGCAG 91928 29 100.0 38 NNNNNNNNNN ............................. TCAAAGGTGACTAAAAACGGTGCAACAAATTGATTTAA 91995 29 100.0 37 NNNNNNNNNN ............................. TACAGTCAGTTCAATTTGTCCTTTTCTAATTTGGTCT 92061 29 100.0 39 NNNNNNNNNN ............................. TAGCAGTGAAATTCAAAAAATCATAGCCGAAAAGGGATT 92129 29 100.0 36 NNNNNNNNNN ............................. GAAATAAACAAACGTATAGATTATGTAATGATGACA 92194 29 100.0 37 NNNNNNNNNN ............................. GATGTACATGTTGACCCTGCAACATGGACCCCTGCTG 92260 29 100.0 37 NNNNNNNNNN ............................. TTGCTCTCTGCGTCGGGCCTGTTCTTGCAGATCCTGT 92326 29 100.0 38 NNNNNNNNNN ............................. ATGGGAATGATTACATTTTGCTCTAGCGGCTCTTTGAG 92393 29 100.0 36 NNNNNNNNNN ............................. AGCTATTATTGGTATGAAGTCCGCATCGTAGATTCC 92458 29 100.0 37 NNNNNNNNNN ............................. AACTGCCGTAGCTCTTCGAAATTTCCCGGGGTCACCT 92524 29 100.0 38 NNNNNNNNNN ............................. GCACACCCTACGACGGAGATTCCGAGCTGCTCCAAGCG 92591 29 100.0 37 NNNNNNNNNN ............................. GCGAAATATTGTTCTGCTTCGTCAAGGGTGACATAGG 92657 29 100.0 36 NNNNNNNNNN ............................. TGAGGATATAGGTTTGGAAGATGAACAAATACAAAC 92722 29 100.0 37 NNNNNNNNNN ............................. TTCTGGCAGACCGGCCATTTCTCTCACATAATCTTCC 92788 29 100.0 38 NNNNNNNNNN ............................. GAGAGTGAGCAGTACAAAGTAATACAGGAAAGTGCAGA 92855 29 100.0 36 NNNNNNNNNN ............................. AAAGGCTGGTAATTAGGCGAAACTTCAGCGTTATGT 92920 29 100.0 36 NNNNNNNNNN ............................. TTTTCAAAACTGTATTGTCAAGAGTATAAGGGTCCT 92985 29 100.0 36 NNNNNNNNNN ............................. TTTTCAAAACTGTATTGTCAAGAGTATAAGGGTCCT 93050 29 100.0 36 NNNNNNNNNN ............................. TGATTATGGTATCGTACCTGGCACCAGCAAACCTAC 93115 29 100.0 36 NNNNNNNNNN ............................. AAAAGCTTTTAGTATCGTCGATGCAAAACTTGTAGA 93180 29 100.0 37 NNNNNNNNNN ............................. ACAGCTTGTAGTGTCGGCAAAATCTTATCTGCTGTAA 93246 29 100.0 38 NNNNNNNNNN ............................. GTGAACTTTGTGCTATTGTAGAGGAGATAAAGAAGCAG 93313 29 100.0 37 NNNNNNNNNN ............................. TGTTCACTGTGAATTTGAATAATCAGCCACAAACACA 93379 29 100.0 36 NNNNNNNNNN ............................. AATCACTGGAGGATTTGTAACAACAGACGATGGAAC 93444 29 100.0 37 NNNNNNNNNN ............................. TAGTTGAGATAGAAATTAATCTTACCCAGAATGATAG 93510 29 100.0 36 NNNNNNNNNN ............................. GCCCACTCGCTTTATAAAGTCCTAACAGGTCAAAGC 93575 29 100.0 37 NNNNNNNNNN ............................. TGATTGGCAGCTCATAAATACCGCACTGTGTCGTTTT 93641 29 100.0 36 NNNNNNNNNN ............................. CTGGAGAGATGAAATTATTGTTTACATAGCAAATTT 93706 29 100.0 39 NNNNNNNNNN ............................. GACGCTGTTCGTTCTGCTTTTGTCAAACGAAAAACCCCG 93774 29 100.0 38 NNNNNNNNNN ............................. GCGGTCAAATTGAATGAAATACTGCAGGAATACCTGAA 93841 29 100.0 36 NNNNNNNNNN ............................. GGTTCTTTCACTGAATACCAGTACAAATTCACTGAG 93906 29 100.0 36 NNNNNNNNNN ............................. GGCTTTAAATGCGGCGTGGGTGTTATCATACTACAA 93971 29 100.0 37 NNNNNNNNNN ............................. GTAAATTGCCGGTTGCCCTGCTGTGGGCTGCCAGATA 94037 29 100.0 38 NNNNNNNNNN ............................. CGAATCCACCGAAAACAGACAGATAAGCGGAGAAGCAA 94104 29 100.0 37 NNNNNNNNNN ............................. GTGTATTTTACCCTTTCGACTATGTCAGGATGGTTCT 94170 29 100.0 36 NNNNNNNNNN ............................. TGAAGTTATGGCTTCTGACAATGAGAGTAGAGCGCA 94235 29 100.0 38 NNNNNNNNNN ............................. ACTTTGATCGCATACGGTCTTGGTTTCCAGCTTAACCG 94302 29 100.0 38 NNNNNNNNNN ............................. GTCTTTTAAATTTGTGGCTATCTGGGCTGGGTCATAAG 94369 29 100.0 39 NNNNNNNNNN ............................. GATCGCTCTCGACAATTCATCAACGGTCACATCCTCTAA 94437 29 100.0 38 NNNNNNNNNN ............................. AAGGATCGGAGCGATAGTTCATCTCCAAATACCAACTC 94504 29 100.0 38 NNNNNNNNNN ............................. GCGTATAAGCAATGGCATTTGTTCTTTAACACTTGCGT 94571 29 100.0 38 NNNNNNNNNN ............................. GTGATTATAACAACAAATTTGACGCTTGAAGAAATTGA 94638 29 100.0 37 NNNNNNNNNN ............................. AAGCGAGGCTTCAAGGAGCTTGTTAAACAAGACTTAA 94704 29 100.0 35 NNNNNNNNNN ............................. CTTCTGGCTTTACGGCAAAAATATGTGCAGCTGAA 94768 29 100.0 38 NNNNNNNNNN ............................. CGAGCTTTACAAAGAATTGTCGATGAGGTAATGTCAAA 94835 29 100.0 38 NNNNNNNNNN ............................. GATGCTGTACTCAACTTCATGGGTGTTTTAAAACCCAA 94902 29 100.0 37 NNNNNNNNNN ............................. TCGTTGTAAATGACGAAAGCGAAAAACCTATTGAAGA 94968 29 100.0 38 NNNNNNNNNN ............................. GTGAATCCTGAAAGAATTACAGTAGAAGCAGGGAACAA 95035 29 100.0 36 NNNNNNNNNN ............................. TCTACTTATCCCCCTTCCAAAACTGCGGGAGGAGCA 95100 29 100.0 37 NNNNNNNNNN ............................. GGAAGTTGAACGCCGCGTGAGTGTCAGGTATCACGCA 95166 29 100.0 36 NNNNNNNNNN ............................. AAGGGGAAAATAAGCGATGTTATAGATGGCGGCCCA 95231 29 100.0 38 NNNNNNNNNN ............................. AATTCATCGAATTTGATTATCAGCACAAAAATAAACCT 95298 29 100.0 39 NNNNNNNNNN ............................. TCTATTAAAACAAAATACATTTCAAACACTCCTTATCAA 95366 29 100.0 35 NNNNNNNNNN ............................. TTTCGATTTTTTGCTATGTTAACTTCTGCAATGTT 95430 29 100.0 1 NNNNNNNNNN ...................CAT.CCTGTA NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 67 29 37 GTTTTATCTGAACTATGAGGGATGTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.52%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [238,1252] Score: 0.18/0.18 # # Final direction: F [0.68,0.18 Confidence: MEDIUM] >NC_014659 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================== ====== 4376554 21 100.0 20 NNNNNNNNNN ....T................ GGGATCCGGGGCCCACCCCT 4376595 21 100.0 20 NNNNNNNNNN ....T................ AGGATCCGGGGGCCGCCCCT 4376636 21 100.0 20 NNNNNNNNNN ..................... GCGGGGAGGGACCTCCGCGG 4376677 21 100.0 20 NNNNNNNNNN ..................... AGGATCCGGGACCCCTTTCC 4376718 21 100.0 1 NNNNNNNNNN ..................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================== 5 21 20 CGCGCTTTGCGCACTTATCGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [28.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [70,1269] Score: 0.18/0.18 # # Final direction: R [0.27,0.55 Confidence: MEDIUM] >NC_014664 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1352288 32 100.0 34 NNNNNNNNNN ................................ GCCGTGTTCGGCGTCGGATATAGGCGCAGCGCTC 1352354 32 100.0 33 NNNNNNNNNN ................................ TGGGTGCCGTCGATGTCATGTGGGAGGTGAAAA 1352419 32 100.0 34 NNNNNNNNNN ................................ TGCATCAACCTTTACAAGCTTTCGCAGCGTGCTC 1352485 32 100.0 35 NNNNNNNNNN ................................ GACGCCAAGCTCATGCAAGTGCAGGACACGGCCTG 1352552 32 100.0 35 NNNNNNNNNN ................................ GCCTGAATGCGGAGCACCTTGCGGCTCTGCTTGTG 1352619 32 100.0 34 NNNNNNNNNN ................................ GTCAAACGTCGCCCATGTCGTCGGATCGCTCACA 1352685 32 100.0 34 NNNNNNNNNN ................................ ATTTCAAAGCCGTCATCCTCGCTCGTGTAAAACT 1352751 32 100.0 35 NNNNNNNNNN ................................ AACATTCAGGGTATGATCGAGCTCTAACTTGTCGC 1352818 32 100.0 34 NNNNNNNNNN ................................ AGGCCAGAGCGCTTGGCCTCTGTCATCGATGGCG 1352884 32 100.0 33 NNNNNNNNNN ................................ GATGGGGATTAGTACCAAATCGGTGTCACATCG 1352949 32 100.0 35 NNNNNNNNNN ................................ GCGCGACAGACAGGAAAAGACCTGTCAACAATGTC 1353016 32 100.0 35 NNNNNNNNNN ................................ GCAGCCGGATACCCCGTCGCGGCGCTACTGGCGGT 1353083 32 100.0 33 NNNNNNNNNN ................................ AGTTTAAAAAGAGTGCTTGATACTGTTTGCGAA 1353148 32 100.0 35 NNNNNNNNNN ................................ GCCTCGAATGTCGCGCCATCACGCGTGAATGAGAA 1353215 32 100.0 34 NNNNNNNNNN ................................ TGATACCGCCGCTCATGCCGCCAGCCTCATGACG 1353281 32 100.0 35 NNNNNNNNNN ................................ ATCAAACACAAGGCCCCGAACCGCGCCGCTTTCCA 1353348 32 100.0 33 NNNNNNNNNN ................................ AATGCTCCGCAGTCGTGTAAAGCTGACGATACA 1353413 32 100.0 35 NNNNNNNNNN ................................ CGTGAAACATGGCGCGCGGTTGAGCAAGCGCTATC 1353480 32 100.0 33 NNNNNNNNNN ................................ ACGCATGAACCAGTCGGCCACAAGACGATCGCG 1353545 32 100.0 34 NNNNNNNNNN ................................ AAGCTGCTGGTGGGCGGAAAGACCGGCGCCTTCG 1353611 32 100.0 34 NNNNNNNNNN ................................ GCTAACTCCAGGACCCGTAGCGGCCAAATAAAAC 1353677 32 100.0 36 NNNNNNNNNN ................................ CCGCTCCAAAGCTACCATCTCAGCCGCCCGTTTCAT 1353745 32 100.0 37 NNNNNNNNNN ................................ ATGGCAGGCGTCACGACGCGCATGCGCGAAGGCTCAG 1353814 32 100.0 34 NNNNNNNNNN ................................ CTACCCCTTTCCTCGTAAAACGCGTACCCGTGAT 1353880 32 100.0 35 NNNNNNNNNN ................................ TGGTCGACCGGGATAACGTGCGTTGGGGGCTGGAC 1353947 32 100.0 35 NNNNNNNNNN ................................ GCCGTTGTAGTTGCTGTCCAGCACTTCCCCCAGGT 1354014 32 100.0 35 NNNNNNNNNN ................................ ACGCTTGGCCTCCTGATCCTCTGCCGCGACGGCTC 1354081 32 100.0 34 NNNNNNNNNN ................................ GCTTTGGGCCTGCTCTCCGTCTATGAGCACTATA 1354147 32 100.0 34 NNNNNNNNNN ................................ GGCGACATCGGGCAACTCGACCGTCTGCCCGGCG 1354213 32 100.0 35 NNNNNNNNNN ..........................T..... ATCGCGCGTAACAGTCACACGGTCAGGGTGTCGCG 1354280 32 100.0 35 NNNNNNNNNN ................................ CCCTTGGATCGCGATTTTCTCATGTGGCGGATAAT 1354347 32 100.0 34 NNNNNNNNNN ................................ TCTTTGGAAATGACGCAATCCGCCCTCGCCGCCA 1354413 32 100.0 34 NNNNNNNNNN ................................ TCTTTGGAAATGACGCAATCCGCCCTCGCCGCCA 1354479 32 100.0 35 NNNNNNNNNN ................................ GCTATCGCCGCATAGTAGGCCGCGATTTTGTCCGC 1354546 32 100.0 35 NNNNNNNNNN ................................ ATCAGTTTGCCCTCCGCTTGGCTTCTTCTTCTCGC 1354613 32 100.0 34 NNNNNNNNNN ................................ CACGGCATGCGCGGGAAATCACGCTGCACCTGTG 1354679 32 100.0 34 NNNNNNNNNN ................................ ACGCCAAGCTGATCGAACGGATAGGCCTCGCCAC 1354745 32 100.0 34 NNNNNNNNNN ................................ GACGCGAGCATAACACGCGCCGCCTTGGCGCGGG 1354811 32 100.0 34 NNNNNNNNNN ................................ CTCGCGATGGCCGCGATTAAACAGGCGTTGCAAT 1354877 32 100.0 34 NNNNNNNNNN ................................ GGCGGTTTGCGCGGCATCGCCTGTATAGGCCAGA 1354943 32 100.0 34 NNNNNNNNNN ................................ GCACTGTTTACGAGTGTGCTATAGATCCGACACT 1355009 32 100.0 34 NNNNNNNNNN ................................ ACGTTGAAGGTCTTGTCTGCGTCTTCGCCGTCGT 1355075 32 100.0 33 NNNNNNNNNN ................................ GCAGTCGTGGCGATGTACATGGGCACCACCACA 1355140 32 100.0 35 NNNNNNNNNN ................................ TCCGACAAGGCGCGCGCCGTCATCGTTGTGCGCTC 1355207 32 100.0 34 NNNNNNNNNN ................................ GGCAGATCGTCAAGATTTAAGTCTTCGCTCATTG 1355273 32 100.0 34 NNNNNNNNNN ................................ TTTTCCCCGAGCGGAAACTTGCATTGGCCGTGGA 1355339 32 100.0 36 NNNNNNNNNN ................................ GCGCGTCATGAGGCGCGGCGCGTTATCGCCGCCACC 1355407 32 100.0 36 NNNNNNNNNN ................................ GTCGCCTGTACGCTCGTGAGCAACTTCTGAGCCGCA 1355475 32 100.0 36 NNNNNNNNNN ................................ ACCAGAAGAACCGCGCCGGACGCCGCGCCGTCGCGC 1355543 32 100.0 36 NNNNNNNNNN ................................ TAACCGTTAAATCCGCGAGAAAACCCGGCGGCCGCG 1355611 32 100.0 35 NNNNNNNNNN ................................ TACCGAGGATACGGTTTAGCTCTTGATGAGGCATG 1355678 32 100.0 33 NNNNNNNNNN ................................ TTTTATGGAGGGAGACCGATGGCTTTGAGCCCG 1355743 32 100.0 33 NNNNNNNNNN ................................ CACGCAAGTGTGCGGCTACCGGTGGCGTCCTGT 1355808 32 100.0 34 NNNNNNNNNN ................................ CACTTCAGCGGCTGCAAGAGGATGTGCTCAGGCG 1355874 32 100.0 33 NNNNNNNNNN ................................ AACAGCCTGTCGCCATAGAGGTTGAGCAGCCGC 1355939 32 100.0 34 NNNNNNNNNN ................................ CTCTGCGAGTACAAGGGCAATAGAGCGGCGGCGG 1356005 32 100.0 35 NNNNNNNNNN ................................ ATCAGGGCGATTGCGTCACTCAGCGCGTTGTGCGG 1356072 32 100.0 33 NNNNNNNNNN ................................ TGTCAACATCACGCAGGCCCCGGCAGTTGCCGG 1356137 32 100.0 35 NNNNNNNNNN ................................ TTGACCTGCGGATTGAAGATGGACCGAGCCACGAC 1356204 32 100.0 34 NNNNNNNNNN ................................ TGCATTCAGCGCGGCAAGCTCCTGAGGCGACAAG 1356270 32 100.0 34 NNNNNNNNNN ................................ GCAGGCGTATACGTCACCTGTGCAGGCGCGGCGG 1356336 32 100.0 35 NNNNNNNNNN ................................ GCCCTTGGCCATCTCACTGGCGACCGACGTCACGA 1356403 32 100.0 34 NNNNNNNNNN ................................ CGGTCACACGGTACAAAGGGCTGGCGCAAGGGTT 1356469 32 100.0 35 NNNNNNNNNN ................................ GGCAGTTCAGCCGCGACCGTCCGCTGGAAGGCGGC 1356536 32 100.0 34 NNNNNNNNNN ................................ CGATCATCCTTGACATCATCGCCAAATCTCTTGG 1356602 32 100.0 33 NNNNNNNNNN ................................ TTTCTTGTGTCGGCTCAATTGCCGTTAGATAGC 1356667 32 100.0 33 NNNNNNNNNN ................................ AACTACAGCGTGGCAATGAGCGTGACTGAATAT 1356732 32 100.0 35 NNNNNNNNNN ................................ TGTACTTGAGCACAGGTTTTGTGGCGAAACCGCCA 1356799 32 100.0 34 NNNNNNNNNN ................................ ACCAGACGACGCGACAACATACGCGCGCGTGCTT 1356865 32 100.0 34 NNNNNNNNNN ................................ GCAGCACTCATGCGAGCCAGCTTGAACCGCTGCG 1356931 32 100.0 34 NNNNNNNNNN ..........T..................... ACCAGACGACGCGACAACATACGCGCGCGTGCTT 1356997 32 100.0 34 NNNNNNNNNN ................................ GCAGCACTCATGCGAGCCAGCTTGAACCGCTGCG 1357063 32 100.0 34 NNNNNNNNNN ..........T..................... GTGATGATGAAACCCCTTGGTGCGCGACGTTCGT 1357129 32 100.0 35 NNNNNNNNNN ................................ CCGTTTTAGCGATGTTGATTGACGGCGCTTTAGCT 1357196 32 100.0 1 NNNNNNNNNN ...........C.................... NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 75 32 34 GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [5,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-5.90,-5.70] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [227,304] Score: 0/0.18 # # Final direction: F [0.68,0 Confidence: HIGH] >NC_014664 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2048647 36 100.0 33 CAAGGTGTAC .................................... TTGCCTGCGGCGTCGGTTTGACACTTCTTGCTA 2048716 36 100.0 32 CTTCTTGCTA .................................... GTTTTTCACGGCTTTCGTGCGCCGTGTTTCAT 2048784 36 100.0 34 CGTGTTTCAT .................................... CAGAACAACAGGATGGGATTGAAAAATATCTGAC 2048854 36 100.0 33 AATATCTGAC .................................... ATTAATTGAAGTGCTATCATCACGTACATGAGA 2048923 36 100.0 32 GTACATGAGA .................................... CGGATTTGGTCACCGGTGGAGCCGGTTGCAAA 2048991 36 100.0 33 CGGTTGCAAA .................................... CGATGACATCGTCGGACTTCATCACCCCTCCGC 2049060 36 100.0 32 ACCCCTCCGC .................................... TACGAATACGAACGGGCTTGCCAATGTTGGAA 2049128 36 100.0 32 AATGTTGGAA .................................... GAGAATTCGTCCACCGTCTTGGCTTCACGCAG 2049196 36 100.0 33 CTTCACGCAG .................................... AGGCGGGGCCTCGTCAACACCGCCGCGATGACC 2049265 36 100.0 32 CGCGATGACC .................................... GGACAGAGTCTGCTTTGGTCTTTTCCCGCGAA 2049333 36 100.0 TTCCCGCGAA .................................... CTTTCAGTTCACGCATGGCGTTGCCTCCGGCT ========== ====== ====== ====== ========== ==================================== 11 36 32 CTCTCAGGCCGCTTCGGCGGCTTGCCCGCGTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-11.60,-9.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [53.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [409,135] Score: 0.18/0.18 # # Final direction: F [0.82,0.37 Confidence: MEDIUM] >NC_014664 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1636014 32 96.9 35 CGTCGGCGGG ...A............................ CCTCTCTCATATACTTGATAGCCAGTTGAACGCGG 1636081 32 100.0 35 TTGAACGCGG ................................ GTGTACACCCTCGCCATCTTCGGATCATCCCAGCC 1636148 32 100.0 35 CATCCCAGCC ................................ ACTAGACCAGAATAAAAGAAAGCCTCTGTTGCAAT 1636215 32 100.0 34 CTGTTGCAAT ................................ ATCTATACGTCGACGGACGGGGGCGCGACGTGGG 1636281 32 100.0 33 GCGACGTGGG ................................ CTCGGCAAGCTCATCTCGGCCGATACGGTCGAG 1636346 32 100.0 33 TACGGTCGAG ................................ CCCTTAATAGATCGGATGCAGCAACTTTTTTTA 1636411 32 96.9 35 ACTTTTTTTA .............G.................. CCTTTCGTTGCACCCATTATCTCTAATAATTCGGC 1636478 32 100.0 35 ATAATTCGGC ................................ TGGTAGGATGGAGCCTCCGGCCAGAGGCGCAGCGC 1636545 32 100.0 37 GGCGCAGCGC ................................ GAGAAAGAGATTTGGCGCTTCATGTGACTTGCTCCCC 1636614 32 100.0 CTTGCTCCCC ................................ GCCGCACTCA ========== ====== ====== ====== ========== ================================ 10 32 34 GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [5,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-5.90,-5.70] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [35.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [15,668] Score: 0.18/0.18 # # Final direction: R [0.27,0.59 Confidence: MEDIUM] >NC_014664 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2058649 36 100.0 33 CAAGGTAGCC .................................... TCGCCAAAACCCCGATTTTTTAGGAGCTTTTCT 2058718 36 100.0 32 GAGCTTTTCT .................................... GGATTAGAGCGAGGCCGAATGCACCTTCCACA 2058786 36 100.0 34 ACCTTCCACA .................................... TCGCGACTCCGCATACCAGTAAGATAATCATCGC 2058856 36 100.0 32 TAATCATCGC .................................... TTCAACAGCATCGATATCGCGCCAAATAAAAT 2058924 36 100.0 32 CAAATAAAAT .................................... GGCGAACCTCGTCAGGATTGGTAATCCAATTC 2058992 36 100.0 33 AATCCAATTC .................................... CTTCTCGATGACATACGTCAACATTAGCTTTGG 2059061 36 100.0 32 TTAGCTTTGG .................................... CCATTTTCCGCGACAGCATACGGCCTGATCGC 2059129 36 100.0 33 GCCTGATCGC .................................... CTGCGCAAGAACTCCGATAATTTCATGATGCGT 2059198 36 100.0 CATGATGCGT .................................... CCGTTTTCACTGATTAACGAAACCCAGAATT ========== ====== ====== ====== ========== ==================================== 9 36 32 CTTTCAGGCCGCTTCGGCGGCTTGCCCGCGTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-11.60,-9.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [53.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [399,137] Score: 0.18/0.18 # # Final direction: F [0.82,0.37 Confidence: MEDIUM] >NC_014720 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2663461 29 100.0 37 NNNNNNNNNN A..ATT.A.A................... CTAAAGCAACAGGGCAGGTAAAGTTTACAGGTAACGA 2663527 29 100.0 38 NNNNNNNNNN ............................. CGAAGTTTGCGGTAGGTATGCAAATGAAGTATATCATT 2663594 29 100.0 36 NNNNNNNNNN ............................. TAGTTCAGCAAAGGCGTAGCTATTCAGGGCATAGCA 2663659 29 100.0 36 NNNNNNNNNN ............................. GCAACAGGAAAAACAACAATTTTTGACGCATTCACA 2663724 29 100.0 37 NNNNNNNNNN ............................. AATCCTTATCATCCAGATTTGTATTGTTCGCTTGATG 2663790 29 100.0 36 NNNNNNNNNN ............................. TTATTAGGTTTGAATTATTATGACGAACAATTATTT 2663855 29 100.0 36 NNNNNNNNNN ............................. CAGTTTTGGTACTTAACAAGAAGGACTTAAAAGCAT 2663920 29 100.0 35 NNNNNNNNNN ............................. GTATCTTCAGGTGCTGTCTGTGTTGAAATATCATC 2663984 29 100.0 36 NNNNNNNNNN ............................. AATTTCCTAGCCTCCTCAATTGTGATTCTGCCTTCA 2664049 29 100.0 36 NNNNNNNNNN ............................. CTTCTCTATATGTAGCTCTCTCATAATCTTCCACCA 2664114 29 100.0 38 NNNNNNNNNN ............................. ATCAAAAGAAGCAGATGAAGATACAGCAGCTTTAGCAG 2664181 29 100.0 38 NNNNNNNNNN ............................. GCAAATCGAAACATTGCAAAAACAAGTAGACTTTTTGA 2664248 29 100.0 42 NNNNNNNNNN ............................. TCTTCGTTAGTTATTTGCATGTCAAAGTAAATGTCTTGGCCA 2664319 29 100.0 38 NNNNNNNNNN ............................. TCTGTCAGAGTCAGTTTTTGTTCGACATTGATTTTAAG 2664386 29 100.0 38 NNNNNNNNNN ............................. CGACAGCGATATTTTGAGAGTCTGCAAGAACAAGCTTT 2664453 29 100.0 36 NNNNNNNNNN ............................. AAGATTGAAGAATATTTAAGTGAATTACGTAAGACA 2664518 29 100.0 36 NNNNNNNNNN ............................. GACACTATAATTGAAAAATGAATGTAATCAAAAAAT 2664583 29 100.0 36 NNNNNNNNNN ..A.......................... TCACATACTTGTTTCCCTAAGTATCTTGATCCTGAG 2664648 29 100.0 36 NNNNNNNNNN ............................. CAAAAGTTCATAGAAGACAAAAAAATACTGTATTCA 2664713 29 100.0 37 NNNNNNNNNN ............................. AGGACGAAGTGGTAAGTGGAAGGGTTGTTCTTTTGAC 2664779 29 100.0 37 NNNNNNNNNN ............................. TCTATTGTTTTTATAAATCATAGCCAAAATGGTGCTG 2664845 29 100.0 38 NNNNNNNNNN ............................. CGATATAGAAGACTCTTTGATACAAGGACTTATAACAT 2664912 29 100.0 38 NNNNNNNNNN ............................. ATAAATCCATCGTAATTGAGATTTGAGAATGCCCCAGC 2664979 29 100.0 37 NNNNNNNNNN ............................. AAAGACTTTCAGTGTTACTAAAAAAATTATCTCAGCT 2665045 29 100.0 35 NNNNNNNNNN ............................. ATCGTTGTAAAAGAATATATTGATGAAGCGGTATC 2665109 29 100.0 36 NNNNNNNNNN ............................. AACAAGGCGAGGTGAAAAGATGAAGAGAGAAATAAA 2665174 29 100.0 37 NNNNNNNNNN ............................. CTTCCCAAAATGCATCAACGAAAATGTTCACGTAGTT 2665240 29 100.0 36 NNNNNNNNNN ............................. GGTTGTAAGTGAGACGACTCTCACGTATGCAACCGT 2665305 29 100.0 36 NNNNNNNNNN ............................. AACGCAGCAGTGTAAAAGAGCCATCTAAAACATATG 2665370 29 100.0 41 NNNNNNNNNN ............................. TGTTCAGCATGAGGAAAAAAGTGAATTTAACATTGACATGC 2665440 29 100.0 37 NNNNNNNNNN ............................. TATCTCGCCAAGCCCCTGCTCAAGAAAGAGCTTCAAA 2665506 29 100.0 37 NNNNNNNNNN ............................. TTGATATATCCCTTGATAAACAAGGCAATCTAATAAG 2665572 29 100.0 37 NNNNNNNNNN ............................. ACAGTACCAGCTATATTAAAAGCTCTCGCATTATTTC 2665638 29 100.0 37 NNNNNNNNNN ............................. TTTATAGCTACTGATAACCTTGTCCATATTTCCGATA 2665704 29 100.0 37 NNNNNNNNNN ............................. CATTGCTCTATCCTCGGTCGATTTCGTACAACAATAT 2665770 29 100.0 37 NNNNNNNNNN ............................. CATTGCTGCTTTGTTACATTGGTGCTGGTTGTCCATG 2665836 29 100.0 36 NNNNNNNNNN ............................. CTTCAGGAACGCATAAACGAAGAAGGGCCTATTGAA 2665901 29 100.0 37 NNNNNNNNNN ............................. TGGCAATGGCGAGGTGTTGCGTTGAGGAGCAGTGCAT 2665967 29 100.0 37 NNNNNNNNNN ............................. CGACACTTCAGACGCTGCAGGGAAGTATGTAGACAGA 2666033 29 100.0 37 NNNNNNNNNN ............................. CAAGAGATTGAAAAACCCTTGATTGTAACAAAAAAGG 2666099 29 100.0 36 NNNNNNNNNN ............................. AAATTTTAAATTCTTAAAACACTTGATTTGTCTGGC 2666164 29 100.0 38 NNNNNNNNNN ............................. TATGACAGCGCCTTTTATAAACGACAGCTGAAGAAAAA 2666231 29 100.0 36 NNNNNNNNNN ............................. CAAGGCTGGGCTGGAATAGGGTATCATTTTTATGTC 2666296 29 100.0 38 NNNNNNNNNN ............................. ATTTCCTCGCTTGCAATGTTTAAATTAGTAGATAAACA 2666363 29 100.0 36 NNNNNNNNNN ............................. TTCACCTCATAATTTTGTAAATCTTTTGATTAGATG 2666428 29 100.0 38 NNNNNNNNNN ............................. AAACTATATAACGCAGAAATTTATACCCTCAATGATAG 2666495 29 100.0 37 NNNNNNNNNN ............................. ATTCCAGAGGCGGATGTTGAAAAAGTAAAAAAACATC 2666561 29 100.0 37 NNNNNNNNNN ............................. CAGGTAGTTTTTATACATTAATTAGACAATTTCAACA 2666627 29 100.0 37 NNNNNNNNNN ............................. TCTTGAAATACCTATTGATTATAAAGACGTCAACGAG 2666693 29 100.0 37 NNNNNNNNNN ............................. ACTTAAAATAAAAGAAAAAGGGTGGCGAATAAGAGAC 2666759 29 100.0 37 NNNNNNNNNN ............................. CATCTTTTAGCCCTCTTAAGTTCATATAATCTGCAAG 2666825 29 100.0 38 NNNNNNNNNN ............................. TTGAATATAATTATCTATTTTTTCGTTCCACTCAAAAT 2666892 29 100.0 37 NNNNNNNNNN ............................. TTTTTTAATACTATCAATATATTCAATTTTATTAATT 2666958 29 100.0 37 NNNNNNNNNN ............................. AAACTCAATAACAAATGCAGACGAGTATTGTTTAGAG 2667024 29 100.0 39 NNNNNNNNNN ............................. ATATGATGCGCGTGTAGTTTCGATTAATCGCAATAGGTT 2667092 29 100.0 38 NNNNNNNNNN ............................. TCAACAACATTAAACATATTAATCTCGGCCGAACTAAT 2667159 29 100.0 38 NNNNNNNNNN ............................. AAAGATTTGCCAAACATATTAGCCAATGCCTGAAATTC 2667226 29 100.0 37 NNNNNNNNNN ............................. TGAAAAAGAAATTTTAGCAATGTATATGGTGGTTGAA 2667292 29 100.0 38 NNNNNNNNNN ............................. TTGTTCAATTTTCTGTTCAATATACTCTTTAATGCCTT 2667359 29 100.0 36 NNNNNNNNNN ............................. TATCACAAGCTTCATAACATAATTACCAGTTAATAA 2667424 29 100.0 37 NNNNNNNNNN ............................. GAAACACAAGCTGGGTATCAACCGATGGGGCTAATAA 2667490 29 100.0 35 NNNNNNNNNN ............................. TTTACAGTATTCGATTGCCTAATTCCACCCTTGAT 2667554 29 100.0 37 NNNNNNNNNN ............................. CATCGCCTCACAGGATGAAGTCTTAGAGTTTCTTACA 2667620 29 100.0 38 NNNNNNNNNN ............................. TTTGTGTAGGTTTTAATTAAATATTCAAACAATGCTAC 2667687 29 100.0 39 NNNNNNNNNN ............................. TGTTCACAATTTCTGGGGCATTGACATTACTTTTATGTG 2667755 29 100.0 38 NNNNNNNNNN ............................. TATGCTGTTGATTATGCGCTATTTTCAAGGGTTAAAGA 2667822 29 100.0 39 NNNNNNNNNN ............................. TCCCAACATTGGCTCTACTGAAACAAATCTTACCGCTGC 2667890 29 100.0 35 NNNNNNNNNN ............................. TCATCGATGACTTGGGCAAGGAGAAGGTAACAGAT 2667954 29 100.0 35 NNNNNNNNNN ............................. CATGATGGACTTGACTTTGAACTTTGTCAATATCA 2668018 29 100.0 38 NNNNNNNNNN ............................. ATTTCCTTTTTATCACCGCGCACATACCAATTGATTTC 2668085 29 100.0 36 NNNNNNNNNN ............................. TAAATTATTGCTTTCATAGTAATATCCAGCATTGTA 2668150 29 100.0 35 NNNNNNNNNN ............................. TAATACGTCTGCCCATTGATTTCAGCAATCTCTGT 2668214 29 100.0 37 NNNNNNNNNN ............................. TGGGGTAAGATAGTATCGACAATTTCAACTGCAGGAA 2668280 29 100.0 37 NNNNNNNNNN ............................. TTGTAATACAGCTTGACAAAGCACGAAATTTAAGATA 2668346 29 100.0 35 NNNNNNNNNN ............................. TGGGATGGTCCAGGCAATGAGAAAAAATTAAGAAT 2668410 29 100.0 37 NNNNNNNNNN ............................. ACCTATTCTTTTCTGTAACATACCCAGACATATTATC 2668476 29 100.0 37 NNNNNNNNNN ............................. GAGAGCTTAACTGTGGCGAAACAGTTGCAAAAAATCA 2668542 29 100.0 36 NNNNNNNNNN ............................. CAGTTTTGGTACTTAACAAGAAGGACTTAAAAGCAT 2668607 29 100.0 36 NNNNNNNNNN ............................. AAGAAGAAAACAACTTAGTATTGGTCGAGCAGTTGT 2668672 29 100.0 36 NNNNNNNNNN ............................. TCCCTCAACTCCATAAATTTCAATTATTCTTCCCCT 2668737 29 100.0 38 NNNNNNNNNN ............................. TATGCACTTGATATTAAACCGACTTTTACTGAAGTATC 2668804 29 100.0 37 NNNNNNNNNN ............................. CTGGTGGCAAACCAACAGAACTTGCCACGACTGTTTT 2668870 29 100.0 38 NNNNNNNNNN ............................. TCTCTTCTAAGTTTGCCGTAAAGGCAAGGACCTCTTGC 2668937 29 100.0 39 NNNNNNNNNN ............................. CAGTAAAACTTCTTTTACACATGAATACATACCAAACAC 2669005 29 100.0 38 NNNNNNNNNN ............................. AAGAACTTATGACCGTCTTATAGAAATGTGTTATCCAG 2669072 29 100.0 36 NNNNNNNNNN ............................. AACATGCTACCAGACGCAGACGCAGGTGTAATTAAA 2669137 29 100.0 36 NNNNNNNNNN ............................. TGCTTCCCTGTGCGATTGCGGCTCAAAGTATGCGTA 2669202 29 100.0 36 NNNNNNNNNN ............................. CTTCCATTAAAACATCACCTACTTTCTATACTTTTT 2669267 29 100.0 38 NNNNNNNNNN ............................. AGGCCAGTGAAGCCATTAAGGCAAGAGATGATATTGAA 2669334 29 100.0 37 NNNNNNNNNN ............................. AAGGCCACATGTCCAATATGTGGTGAGGCAACAACTA 2669400 29 100.0 39 NNNNNNNNNN ............................. CATCCATTTATCTGCTTCAGAACCGGGTCCTTCTTTAGT 2669468 29 100.0 37 NNNNNNNNNN ............................. GATGAACTATATAAAACAACTCAACGCCTTTTATGAT 2669534 29 100.0 39 NNNNNNNNNN ............................. CTTGGGATACATGAGGAGAGGCTAAAGAATCTTGAGGAA 2669602 29 100.0 36 NNNNNNNNNN ............................. CATAGAAGAGAAGGTGAATGAGATGTGCGTTAAACT 2669667 29 100.0 39 NNNNNNNNNN ............................. TGGACGACGTATCTACTGGACGCTGAAAAGGGTATACAG 2669735 29 100.0 39 NNNNNNNNNN ............................. CAAGAAAAAGCGTTGATAATGGCTTGTAGAAGGATAGAA 2669803 29 100.0 36 NNNNNNNNNN ............................. TTCAAACCTTCCTTAAGTTTTTTCATCATTTCCTTT 2669868 29 100.0 39 NNNNNNNNNN ............................. TAGATATCAGGAAAACGACATTAAGCTTAAAATCAGATT 2669936 29 100.0 38 NNNNNNNNNN ............................. CTGGATTTAACAGGCGCAACAGTGAAGCTGGTAATAAG 2670003 29 100.0 36 NNNNNNNNNN ............................. CCTTTTTATTTCCTCGACAATTGCGTAAAGCTCACT 2670068 29 100.0 37 NNNNNNNNNN ............................. TCCATGCTGTCAACTGCCGAGATGATAATCCCCTCTT 2670134 29 100.0 35 NNNNNNNNNN ............................. AATAATAACAGTAACAAGAGCACTATATTCTCTTT 2670198 29 100.0 38 NNNNNNNNNN ............................. TATGACAGCGCCTTTTATAAACGACAGCTGAAGAAAAA 2670265 29 100.0 38 NNNNNNNNNN ............................. CATTGCAAATAAAGCAATTAAGGCAGCTTTAGTAAAAA 2670332 29 100.0 36 NNNNNNNNNN ............................. GGAAATGTTGTTTTCGACCCTCGGCTGTTCAAAAAC 2670397 29 100.0 36 NNNNNNNNNN ............................. TATCCCTTTATTTTCACTTTCTTGAAAAGCAAACCA 2670462 29 100.0 37 NNNNNNNNNN ............................. TTCGTCCAGTAGAACTACGTCGTATTTTTTCATGAAA 2670528 29 100.0 36 NNNNNNNNNN ............................. ATGTCGAATTCGTAATGTTCAGTTTTGCCCAGAAAC 2670593 29 100.0 37 NNNNNNNNNN ............................. ACGTACCATTTGTTCCAGCCCGAACCGCCCCAACGAT 2670659 29 100.0 38 NNNNNNNNNN ............................. CAATAAGCCAAATTTACAAAATACAGGACAAACAATAA 2670726 29 100.0 37 NNNNNNNNNN ............................. AGTTGTTGAAGCGAAAGAAGATAGCGCCGCTACAAGT 2670792 29 100.0 38 NNNNNNNNNN ............................. AGTATGAAGTGAAGCACATAAATATGAGAAATTATTTC 2670859 29 100.0 37 NNNNNNNNNN ............................. TTATTGGAGTGTATACAGGAGCAGTTCTTGTTTGGTA 2670925 29 100.0 36 NNNNNNNNNN ............................. TAGTTCTGGTGCATCAGGCGGTGCTATTCGGTCATT 2670990 29 100.0 38 NNNNNNNNNN ............................. ACTTCTTGAACCTTTTGTATCAATTCTGCGTATTCACC 2671057 29 100.0 36 NNNNNNNNNN ............................. TATTACATATTGCTTGTCCACAATGTCATAGCCAAG 2671122 29 100.0 36 NNNNNNNNNN ............................. TAGATTAAAACAAGCAGGATTAATTGACTTTAAACC 2671187 29 100.0 37 NNNNNNNNNN ............................. TGTCACATTGAATTCCTTACCAACCTCATCCAAAGTG 2671253 29 100.0 35 NNNNNNNNNN ............................. AAGACATGAAAAAAATCCTGCCAATTTTCATTGAT 2671317 29 100.0 37 NNNNNNNNNN ............................. AGGTCTCTTTTAAAAACTAATTAAAGAATAACTAAAG 2671383 29 100.0 37 NNNNNNNNNN ............................. CGGGAGCTGAGTTTTGCTTGTCAAAATATATTCTTGC 2671449 29 100.0 36 NNNNNNNNNN ............................. CTTGTGTTGTTCTTCTACATCGATCACCGCTTCAAT 2671514 29 100.0 38 NNNNNNNNNN A............................ TTTATTTCACTAAGCAAGTTTATCATTGTCCCAAAAAT 2671581 29 100.0 37 NNNNNNNNNN ............................. TTAAAATATCCGAAGTCATTACACCGGCTTTCTATGA 2671647 29 100.0 37 NNNNNNNNNN ............................. AGAACTGGGGTAAAATAGCTTCAATCTTTGCAACAAC 2671713 29 100.0 37 NNNNNNNNNN ............................. CTTCAAAGTCTTGTCTTAGAGCTTCAACATCTCTGAC 2671779 29 100.0 38 NNNNNNNNNN ............................. TGGTGGTTTGAGCCGAGACAGACGACACTCTTACTTGA 2671846 29 100.0 38 NNNNNNNNNN ............................. AGACAAAAGCCTGCGAATTGTGGCACTTACAGATAATT 2671913 29 100.0 37 NNNNNNNNNN ............................. AGCTTCTTTTAAAGACAATATGAGGTAAGAAGTTATT 2671979 29 100.0 34 NNNNNNNNNN ............................. TAAGGATAGTCTTTCATCTCTCTCTCTGATTTAT 2672042 29 100.0 37 NNNNNNNNNN ............................. AATCTGTTAGACCACAAAAAAGACTACTTCAAACTAC 2672108 29 100.0 37 NNNNNNNNNN ............................. CTTCTACTTGCAAGTTTGTAAGTGCCCATTTTAAAAC 2672174 29 100.0 37 NNNNNNNNNN ............................. TAAGCAAACATGGTTTGTGTGAACGCTGCGGTAGACC 2672240 29 100.0 35 NNNNNNNNNN ............................. TTGGCAGAAGGGTTTATTGAATATTGCAAACAGAG 2672304 29 100.0 35 NNNNNNNNNN ............................. TTTTGTACACTTCAGGGTCTTTTGGGACAGTTCCA 2672368 29 100.0 37 NNNNNNNNNN ............................. TAACTTTATCTCTTACAGTTTCTGTTGCAGGATTCCA 2672434 29 100.0 37 NNNNNNNNNN ............................. TTACGGACTTTGCACATAAAACAACTCATGCAAAAGG 2672500 29 100.0 36 NNNNNNNNNN ............................. AAGGTCGTTTATAATTATCTGTTTTCTTTCCTTAAG 2672565 29 100.0 38 NNNNNNNNNN ............................. TTTATTTCACTAAGCAAGTTTATCATTGTCCCAAAAAT 2672632 29 100.0 37 NNNNNNNNNN ............................. TGAGTGTTTGCAGAATTTTTCTATAAATTCAATAGGC 2672698 29 100.0 36 NNNNNNNNNN ............................. TTGAAGTCAAGGGCAAATCGCGACGTGCTAATAAAG 2672763 29 100.0 36 NNNNNNNNNN ............................. TTGTTTGGGATGAACTGTTATCAAGCTTCTCAGGTG 2672828 29 100.0 38 NNNNNNNNNN ............................. TTTTTCAATTTAGTAGCCGTGTTTACGAGAACGTTGTT 2672895 29 100.0 36 NNNNNNNNNN ............................. ACTTCTTGTTGCTTGAATGTAAGTATCTTGATAAGC 2672960 29 100.0 35 NNNNNNNNNN ............................. CATAACAGCATACATACAAGTCCACCGACACAAGA 2673024 29 100.0 38 NNNNNNNNNN ............................. GAAAGAGTTCAAGATGACACTTGAAGAATTTATAGAAA 2673091 29 100.0 38 NNNNNNNNNN ............................. CCAATACATTGACTATCGCTTTTATCCCAAGATTGCAT 2673158 29 100.0 37 NNNNNNNNNN ............................. TTCACAAATATGATTTTGAATTAAAAACTATGACAAT 2673224 29 100.0 38 NNNNNNNNNN ............................. AAAGATAGAAACAAAGTTGTTGAATTATTGGGACAGTA 2673291 29 100.0 36 NNNNNNNNNN ............................. AAATCCTGCCAATCAAATTGCATCAAAATAAGAACA 2673356 29 100.0 38 NNNNNNNNNN ............................. CTTGCAATTACTTCTACAAATTTTATTTTCGCATTAGC 2673423 29 100.0 37 NNNNNNNNNN ............................. GACAAAAAACAAAATAAAATACTTAGATTGTGTAGAA 2673489 29 100.0 35 NNNNNNNNNN ............................. CAATACGGTTTATTAAACAATACATGCCAGACGTA 2673553 29 100.0 38 NNNNNNNNNN ............................. AATGTACATACCTTACTGTTACCAACATTTCTTAACTC 2673620 29 100.0 37 NNNNNNNNNN ............................. TTTACCAACTGACAGATGTTCATTTTCACATCTTTGC 2673686 29 100.0 38 NNNNNNNNNN ............................. GAGTGTTTGTAAGTGTTATTGTCTGTACTTCACCTTCT 2673753 29 100.0 38 NNNNNNNNNN ............................. TTTGAACAATGCACTAAAAACGTTCATATAGCAATTTT 2673820 29 100.0 36 NNNNNNNNNN ............................. AAAGAATGCGACATAAGTCCAAGAACCTTTTACCGA 2673885 29 100.0 35 NNNNNNNNNN ............................. TAAAAGCCATTTCTAACAAAAAGTCGCGTATAAAA 2673949 29 100.0 39 NNNNNNNNNN ............................. TTGTATAAAAATTCAAGATTTTAGTATAAAAATTAAAAA 2674017 29 100.0 37 NNNNNNNNNN ............................. TTACCTGATCCCAGTTAGAAACACCTAATGTAAAAAA 2674083 29 100.0 39 NNNNNNNNNN ............................. TGTGCAACAGCAAATAAATGAGCTGTTAACAAAAGATTA 2674151 29 100.0 36 NNNNNNNNNN ............................. TACATTCAAACAGACGCTTATAAAAATCTTCAAAAT 2674216 29 100.0 38 NNNNNNNNNN ............................. TTATCTACAACGCTAACCCTGTCGCCCAACAACAATGC 2674283 29 100.0 39 NNNNNNNNNN ............................. TGTTGAATTTTTAAAAACTGTCGACACTTCTGATGCAGC 2674351 29 100.0 37 NNNNNNNNNN ............................. TAACAATCTTTGAAGCATAAGATGATCATTTATATAT 2674417 29 100.0 37 NNNNNNNNNN ............................. TCAGTTGCTATTCCTTGAACCCATAATTATTTATTGC 2674483 29 100.0 38 NNNNNNNNNN ............................. CAGGGTACCGGTAAAACATTAGTAGCTATTGCTCTTAT 2674550 29 100.0 36 NNNNNNNNNN ............................. TGCATATTATTGCTACAGTTCACGACGCTATTTTAA 2674615 29 100.0 36 NNNNNNNNNN ............................. TATAAAAATTCACTTTCACTATTTATTTCTAAGATG 2674680 29 100.0 37 NNNNNNNNNN ............................. AGGCGTATAATTTCAACTATATCATCGAGGGGTATTT 2674746 29 100.0 36 NNNNNNNNNN ............................. CAACTTTTGAGACGCTAAAAAAACGGTCGGGAGTAT 2674811 29 100.0 37 NNNNNNNNNN ............................. AACGAAGAGGTATTCCTGACATCATAGGGTGTTATAA 2674877 29 100.0 38 NNNNNNNNNN ............................. AAAGAAGTTGTTTATGAAGAAGAGTACAGAGATTCTAG 2674944 29 100.0 37 NNNNNNNNNN ............................. TGATATCTCCGAAAAATCAGCTAAACCTTATCTTTCC 2675010 29 100.0 37 NNNNNNNNNN ............................. TTGGTCAGCAGGGTTAGTCCCGCTGCCAATTGGCTTC 2675076 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 177 29 36 GTTTACATCCCTCATAGTTCAGATAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.52%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [526,529] Score: 0/0.18 # # Final direction: R [0,0.41 Confidence: MEDIUM] >NC_014720 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2735113 30 100.0 38 CTATCCACGG .............................. TTTTTAGTAGTCCAGAAGAAGAAAAATTACTTAATACC 2735181 30 100.0 36 ACTTAATACC .............................. TCCACACATTCACTCTAATATCACCGTACTTACCAA 2735247 30 100.0 36 TACTTACCAA .............................. TAATATTAATTAATGCTATCACAAGCCTTATCACCA 2735313 30 100.0 37 CTTATCACCA .............................. ACCATCCATCACTTATCCCTTAACATTAAACAACCAG 2735380 30 100.0 37 AAACAACCAG .............................. TGTCGAAACGCATTAAATGCCTGCCCCGCTATTGTAA 2735447 30 100.0 37 GCTATTGTAA .............................. AAGTCTGCGGTCTCTCAATCATTCAGCTCTCCTCCTT 2735514 30 100.0 37 TCTCCTCCTT .............................. ACTTGATAGGTGGATATGTAGATAGTGACGGGGACGG 2735581 30 100.0 36 ACGGGGACGG .............................. TCCAGTCAAGTAATTCCCAACCCTCGAATGTAAACT 2735647 30 100.0 36 AATGTAAACT .............................. TAATATTAATTAATGCTATCACAAGCCTTATCACCA 2735713 30 100.0 35 CTTATCACCA .............................. CTTTCAAAATATTCCTTTCAAACCCATTGTATCTA 2735778 30 100.0 36 ATTGTATCTA .............................. ATTTCTTCGGGGTCTTCAACACAAAATCTACAAGGA 2735844 30 100.0 35 TCTACAAGGA .............................. CGTTGATATTAGGAATTGCAATACTATTTGGTTCT 2735909 30 100.0 36 ATTTGGTTCT .............................. ATAATTGCTCTTGTAAGAGACAGACTTGAACGTGAA 2735975 30 100.0 35 TGAACGTGAA .............................. TATATTTTTGTTCTATTGTTCTAAAATAACCTCGA 2736040 30 100.0 37 ATAACCTCGA .............................. CAGCGACGACATTGGGCATCCGCAGGGCGAAATACCG 2736107 30 100.0 36 CGAAATACCG .............................. TTATACCTAAAAGTATAATAAAGCAAAATATAAAAC 2736173 30 100.0 34 AATATAAAAC .............................. TAATGTGAAGCTTCTCTCTTGAGTGAGCCAATCA 2736237 30 100.0 36 GAGCCAATCA .............................. GTCTAATCATCATTCAGCACCTCCTAACAAACGACG 2736303 30 100.0 34 ACAAACGACG .............................. TAATGTGAAGCTTCTCTCTTGAGTGAGCCAATCA 2736367 30 100.0 36 GAGCCAATCA .............................. TTTTTTTGTGGTGTATGAAAAACCATTTGATTATCA 2736433 30 96.7 35 TTGATTATCA ....................A......... TCAACAGGCTGAACCACAGTTTGGTTATGTTGATA 2736498 30 100.0 36 TATGTTGATA .............................. TGATTTCCATTGTTAAATTATGCTATTACCATTTGT 2736564 30 100.0 TACCATTTGT .............................. TAAAAGTAAGC ========== ====== ====== ====== ========== ============================== 23 30 35 GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [5,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-7.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [433,110] Score: 0.18/0.18 # # Final direction: F [5.09,0.74 Confidence: HIGH] >NC_014720 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2745478 30 100.0 34 CTATCCACGG .............................. GATAATGGATGTCGTGTATATGTTGCCCGGCCTC 2745542 30 100.0 36 GCCCGGCCTC .............................. TAATACCTTCCAGTCGTCCATTAATTCTCTTCATCT 2745608 30 100.0 37 CTCTTCATCT .............................. TTATAGCCATCTTAAATCAACCTCCTCAATTTCGTGA 2745675 30 100.0 37 AATTTCGTGA .............................. AACACATCGTAATTACTTAGCAGCCCTTTTTTCCACG 2745742 30 100.0 36 TTTTTCCACG .............................. AAGAGAAAGAGGAAAAGAAGCAAAAAAGAGTAAAGA 2745808 30 100.0 36 AGAGTAAAGA .............................. CTGGACTTGTTACATGCAGTTGAGACAGCAGTGAGG 2745874 30 100.0 36 AGCAGTGAGG .............................. CTGGACTTGTTACATGCAGTTGAGACAGCAGTGAGG 2745940 30 100.0 35 AGCAGTGAGG .............................. ACAGGGAAAGAAGTGTATGTAAGTACGAAAGATAT 2746005 30 100.0 CGAAAGATAT .............................. TATATTCAAT ========== ====== ====== ====== ========== ============================== 9 30 35 GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [5,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-7.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [1610,1104] Score: 0/0.18 # # Final direction: F [4.5,0.74 Confidence: HIGH] >NC_014720 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2769632 30 100.0 35 CTATCCACGG .............................. TCATTTAAAGCGGTCTTGTCTACAATTACATATGG 2769697 30 100.0 36 TTACATATGG .............................. AAGTTAGAAACAATTCTTTTTTTGCTGTTCTATTCT 2769763 30 100.0 34 GTTCTATTCT .............................. ACACAAGCATACCGTCTGAATTGTAGCTAACCTG 2769827 30 100.0 34 AGCTAACCTG .............................. CAGTAGATGAAAAAATATTAATTAGGTATTCAGA 2769891 30 100.0 35 GGTATTCAGA .............................. TCTTTCACCCTCCAATGCAGCTTTCAAGTCTTCAA 2769956 30 100.0 36 AAGTCTTCAA .............................. AGATAATAATTGAGAAGTATAAAGACGTATTTGAAT 2770022 30 100.0 35 GTATTTGAAT .............................. TTGAGGATTCGAATTTTACTGAGTTTTTTCTTGCC 2770087 30 100.0 36 TTTTCTTGCC .............................. TCATTTTCATCTTTTCACCATACCATTTTGTTACCC 2770153 30 100.0 35 TTTGTTACCC .............................. ACATACAATCATCTAATAGATTTGTATTACAAACA 2770218 30 100.0 35 ATTACAAACA .............................. ACATACAATCATCTAATAGATTTGTATTACAAACA 2770283 30 100.0 36 ATTACAAACA .............................. CAAATTTTGCAGGAACATAAAGGTCTTTTGTAATCA 2770349 30 100.0 35 TTTGTAATCA .............................. CCATACAATCCACGCTCAATACTAATTTCAACAAG 2770414 30 100.0 37 TTTCAACAAG .............................. ATATATCTGTATTTAAAACATTCCTTACCGCCTTACC 2770481 30 100.0 36 CCGCCTTACC .............................. ATAGAAACATGTAAAATGGAGCTCCGCTGTATGCGT 2770547 30 100.0 34 CTGTATGCGT .............................. TCATAATCCAGCCCTAAAATCTCACAAACTTTAA 2770611 30 100.0 35 CAAACTTTAA .............................. TGGAATATATGTGTCCACAGTATCTTTAACAGTTG 2770676 30 100.0 37 TTAACAGTTG .............................. CTCTTGTTGGATATACTCGTTTTTATCTATGGCATCA 2770743 30 100.0 TATGGCATCA .............................. TAATTGATTTCGATCCGCCTTCACTCTCAGGCATAG ========== ====== ====== ====== ========== ============================== 18 30 35 GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [5,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-7.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1881,442] Score: 0.18/0.18 # # Final direction: F [4.95,0.74 Confidence: HIGH] >NC_014720 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2788771 30 100.0 35 GCCTTCTACG .............................. GACGCGCACAATTTTCGCAAATGCACTCGTACTCG 2788836 30 100.0 36 CTCGTACTCG .............................. TTTCATGAGAGCAAGAGTAGCAAAGTCGTCTTGCAA 2788902 30 100.0 35 CGTCTTGCAA .............................. CAGGCGTCGGCGATGTAAAAGTATTTCCGTTATGG 2788967 30 100.0 36 TCCGTTATGG .............................. TCTGTCCTATAGACTCTGAGCCAATGCTCAGAGTCC 2789033 30 100.0 37 CTCAGAGTCC .............................. GCAGAAGCTGAATATCAAGCAATAAGTGCTGGTGTAG 2789100 30 96.7 35 GCTGGTGTAG .....C........................ CACGTGTTATTATGAAGGTGCGTTTGGTGATGAGC 2789165 30 100.0 GGTGATGAGC .............................. AAGTCTTTTT ========== ====== ====== ====== ========== ============================== 7 30 35 GTTCGTAGCCTTCCCTTTGGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [5,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.30,-4.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [524,295] Score: 0/0.18 # # Final direction: F [5.28,0.37 Confidence: HIGH] >NC_014720 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2791967 30 100.0 35 CCTTCTACGG .............................. CATACAAGATCAACACTCTCACCCACCTTATAACC 2792032 30 100.0 36 CCTTATAACC .............................. TAATATTAACTGTAATCAACATTTACTGCATGTAAG 2792098 30 100.0 36 TGCATGTAAG .............................. AAAAGTCTCAACAAAGTATCGTCTTTATTAATGTTT 2792164 30 100.0 36 ATTAATGTTT .............................. GGGTTTTCAATATATAGTTGCTTTAAATGGTTGTAG 2792230 30 100.0 36 ATGGTTGTAG .............................. AAAAGTCTCAACAAAGTATCGTCTTTATTAATGTTT 2792296 30 100.0 36 ATTAATGTTT .............................. GGGCTACCATGATTTTCCCTGTCCATATCGACCTTG 2792362 30 100.0 ATCGACCTTG .............................. TCTGTTCCTTTCTCACTCTGCATTATGACAGGTTCGT ========== ====== ====== ====== ========== ============================== 7 30 35 GTTCGTAGCCTTCCCTTTGGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [5,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.30,-4.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [541,371] Score: 0/0.18 # # Final direction: F [5.14,0.37 Confidence: HIGH] >NC_014721 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2496983 28 100.0 38 NNNNNNNNNN ACAGG.ATG................... TGGAAAGATGATGTCATAACACTTGTCGCTTTATTAGG 2497049 28 100.0 39 NNNNNNNNNN ............................ TAGTTATAAGCGTAAACATCACGCTGTATATTTGTTGTG 2497116 28 100.0 37 NNNNNNNNNN ............................ TCCATCTATACGTTGCCTTTGATTTTGCCCCTTGACG 2497181 28 100.0 38 NNNNNNNNNN ............................ TAGTCCATTATCTTTGTTAAACCAAAAACTATTATGCG 2497247 28 100.0 38 NNNNNNNNNN ............................ GAGATTACAGACATTGACGGCAATGTTTTGTATTACGG 2497313 28 100.0 38 NNNNNNNNNN ............................ GAGATTACAGACATTGACGGCAATGTTTTGTATTACGG 2497379 28 100.0 36 NNNNNNNNNN ............................ ACATTGAGTGCCATTCAGCATCCCACCTTTACATAG 2497443 28 100.0 37 NNNNNNNNNN ............................ AGCTTGGCTTTTTTGTGTTGATACATTTCTAAAATAG 2497508 28 100.0 38 NNNNNNNNNN ............................ CAACGATTAAACAACTTTATGAAGCTGTAACAGCAGTG 2497574 28 100.0 37 NNNNNNNNNN ............................ TGGCGAAGAGCCACCAGAAAGCATTTTGAAGCTTGCG 2497639 28 100.0 39 NNNNNNNNNN ............................ CGGTAACTGAGTGGTAACTAAAAAATCCAGCAAAATCAG 2497706 28 100.0 36 NNNNNNNNNN ............................ ATGGCTAATATCGTAGAAGTTGCTTATAAACTCAAG 2497770 28 100.0 38 NNNNNNNNNN ............................ TTTCAATATATGCCCAAAAAATAAGACCAGCCCTACTG 2497836 28 100.0 40 NNNNNNNNNN ............................ TGTGTTCAGCCAATGGAAATTTCTTGACAAAACAATCTTG 2497904 28 100.0 39 NNNNNNNNNN ............................ AGAATTAATCCAGGATTTCGTTTCTCGAAATGCACAATG 2497971 28 100.0 38 NNNNNNNNNN ............................ CTGAACAACAACAGAAAGCAGCAATGATGTATGCAACG 2498037 28 100.0 37 NNNNNNNNNN ............................ CCATAAAACACCGTTCTTTTCAAACAAAACCTGTGCG 2498102 28 100.0 38 NNNNNNNNNN ............................ GTTTAATGTTGAATCCAAAAGTCTTGCCTCCAAAGCCG 2498168 28 100.0 37 NNNNNNNNNN ............................ TCAACAAATTAACACCACAGCAGCAACAACAGATTGG 2498233 28 100.0 37 NNNNNNNNNN ............................ AAATTAAATTGCCACATTTGGACGAGTTATTTGACAG 2498298 28 100.0 39 NNNNNNNNNN ............................ TGTTAAAGTGCTTTTAAGAGAACTCTCAGCTTTTGAAAG 2498365 28 100.0 37 NNNNNNNNNN ............................ TTGGTATAGTGGCATACCTACCGCCGGTAAAGCCCTG 2498430 28 100.0 38 NNNNNNNNNN ............................ CGTTTTGCTCTAATGCTGTGCTTGGTCCTGCCATGTGG 2498496 28 100.0 38 NNNNNNNNNN ............................ TCTCTATCTGTATGTTTGTCAATGCCCATTTCAAAACG 2498562 28 100.0 39 NNNNNNNNNN ............................ TCTCTTTCAACTCAAGACATAACTTTTCTGCCCTTGTCG 2498629 28 100.0 38 NNNNNNNNNN ............................ CAACCATGCCTTGTCCAGCCTTCATAACCATTGTCACG 2498695 28 100.0 37 NNNNNNNNNN ............................ CGATGTATTGCTATATCTCTCTACTTCTTCAGCATTG 2498760 28 100.0 39 NNNNNNNNNN ............................ CTTGGTAGTTTATATTGCACACCCGTATCGTGATAATCG 2498827 28 100.0 39 NNNNNNNNNN ............................ AAATGCTAAACAAGATGAGCAGTTCAGAATTGACTGAAG 2498894 28 100.0 37 NNNNNNNNNN ............................ AGTTCTTCTCTCAGCGTCTCTGCGTCGTATTCATACG 2498959 28 100.0 38 NNNNNNNNNN ............................ TTGCCATCCACCCTGCATAGAACACTAACCCCAGCAAG 2499025 28 100.0 37 NNNNNNNNNN ............................ GCAACAAGGTTACAAGATAAATTAAAGCTTCTTAAAG 2499090 28 100.0 39 NNNNNNNNNN ............................ TATCGATGACTTTCCAAGTTAGAAAGTCACCTTTGCAAG 2499157 28 100.0 39 NNNNNNNNNN ............................ AAAATTTTGTTATTGAATTTCCGAACAACATCGCACAGG 2499224 28 100.0 37 NNNNNNNNNN ............................ TCTGCTGTATTTCATGACACATTTTGACAAAAAAATG 2499289 28 100.0 41 NNNNNNNNNN ............................ CAGCTGCTGAAATAATCTTAGCTGGTATGCAGCGTGATTTG 2499358 28 100.0 36 NNNNNNNNNN ............................ AAATGGTGTGTTCACAAAGGTTATATATTACAGAAG 2499422 28 100.0 37 NNNNNNNNNN ............................ TCTTTGAATTTGTATTCAGTTGACCTTGAAATTTCGG 2499487 28 100.0 38 NNNNNNNNNN ............................ TAATGAGCTTATAATAAAAGTCATAAGCGTTCATCCAG 2499553 28 100.0 37 NNNNNNNNNN ............................ AAGATAGGAAATATTATAAGAAGGTATGAGCTTACTG 2499618 28 100.0 38 NNNNNNNNNN ............................ TGCCTTAATAATCGCATATACAGTTTTTACACAGAAGG 2499684 28 100.0 36 NNNNNNNNNN ............................ CTCTCTACATATTGTATTGAAGTACTCAAGCATCGG 2499748 28 100.0 39 NNNNNNNNNN ............................ TTACAAACTGGTTGCAGAAAGAAAATGAGAAAATTCAGG 2499815 28 100.0 38 NNNNNNNNNN ............................ TACACCTTCAAGCATCCTGAGCAACGTTTCACACGCAG 2499881 28 100.0 39 NNNNNNNNNN ............................ CTTAGCCAATTCTCTTTTGAGTCCGCTGAAATCCGCACG 2499948 28 100.0 40 NNNNNNNNNN ............................ CTCAGTAATTAGAATAACCTTATCGGGTGTTCCGCCTTGG 2500016 28 100.0 37 NNNNNNNNNN ............................ GTTGAAATATTCTTGTTTGCAAAGTGACAGTGCTCTG 2500081 28 100.0 36 NNNNNNNNNN ............................ TTTTTTGTATAAAAACTTTTCAAAGTAGAGATAAGG 2500145 28 100.0 38 NNNNNNNNNN ............................ CCTTCACGAAAATGTCAACATAGCTTGGTGCCACCTCG 2500211 28 100.0 37 NNNNNNNNNN ............................ GTTGAAATATTCTTGTTTGCAAAGTGACAGTGCTCTG 2500276 28 100.0 37 NNNNNNNNNN ............................ CTCCTTTGTCACATTACTATAAATCAAAAAACCCAAG 2500341 28 100.0 37 NNNNNNNNNN ............................ TTGTCAAGCCTCCTCAGAAAAATTTAGCTACCAGTAG 2500406 28 100.0 38 NNNNNNNNNN ............................ CTTTTTTGTCCTTTTTGGGAGCTTCAATGCTTTCAAAG 2500472 28 100.0 37 NNNNNNNNNN ............................ ATGTTGGCAAACGTCTAATATTCCGCCTGTCTCAATG 2500537 28 100.0 39 NNNNNNNNNN ............................ TTCTCCTTTGTCACATTACTATAAATCAAAAAACCCAAG 2500604 28 100.0 37 NNNNNNNNNN ............................ ATGTTGGCAAACGTCTAATATTCCGCCTGTCTCAATG 2500669 28 100.0 37 NNNNNNNNNN ............................ CCTTTAGTTAATTGCTGCGCTGCCTCTTGCCCTGCTC 2500734 28 100.0 40 NNNNNNNNNN ............................ CTGAATGTCCAGCCCATGTAAAACACGCATATCAACAGTC 2500802 28 100.0 39 NNNNNNNNNN ............................ AAATCATGGACCTGCTACATTCATGCGAGACATATTTGC 2500869 28 100.0 38 NNNNNNNNNN ............................ GTTGAATTCTCTCCTCTGGGATAGGCTGTCCGCAGGTC 2500935 28 100.0 39 NNNNNNNNNN ............................ TATTCTTTCAAATTCAATAGTAACAAATTTTGCTATTGC 2501002 28 100.0 37 NNNNNNNNNN ............................ GAGTTATAACTAACTTGTAATCTGCCATAATAATGTC 2501067 28 100.0 39 NNNNNNNNNN ............................ TCAAACTTTTTATGCCAGAACCTTTTTGTCTCTTTTAAC 2501134 28 100.0 37 NNNNNNNNNN ............................ TGTCGTTTGGAATTTTCATGTACTGCGGTTTGATAGC 2501199 28 100.0 38 NNNNNNNNNN ............................ CGTAATATTGTATACCATCAATTTCTGCTATAACAGTC 2501265 28 100.0 37 NNNNNNNNNN ............................ CAAATTCCATACTTGCATTTCTTTTTTGTCCTTTTTC 2501330 28 100.0 39 NNNNNNNNNN ............................ TCTAATTCTTGTCAAATCTAAGATAGCGGGTTTGGGTTC 2501397 28 100.0 38 NNNNNNNNNN ............................ AAAGGAATAGCTAATGGGATTTTGGAATTTATAAAAGC 2501463 28 100.0 37 NNNNNNNNNN ............................ TTTTTTCAGCCTGTTCGACCGCCCCAAATTGCATACC 2501528 28 100.0 38 NNNNNNNNNN ............................ TTATTATAAGCTGTTTTAATTCTTTCAAAAGTTTCCCC 2501594 28 100.0 38 NNNNNNNNNN ............................ GAAAGAATCTTTCTTATTTCGAGTTTATCTGCATCTAC 2501660 28 100.0 38 NNNNNNNNNN ............................ AATGACAATAAAACATGATGAAATAGAAAACATTACAC 2501726 28 100.0 38 NNNNNNNNNN ............................ TCCCACGAATAATATAATCATGCACTCCGTCATTTGCC 2501792 28 100.0 38 NNNNNNNNNN ............................ TCAAATGTCTTACCTGTTGCATCTTGTATAAACTTTTC 2501858 28 100.0 37 NNNNNNNNNN ............................ TGTTACAAGCTTGATAAACAATTATCTCATGACAGAC 2501923 28 100.0 38 NNNNNNNNNN ............................ TTTGGTCATATCTCTGCAATCTCTCTAATTCTGTATCC 2501989 28 100.0 37 NNNNNNNNNN ............................ CTTCTTCGGCTGTTTTAATCCAAAATGCTTCTTCTTC 2502054 28 100.0 37 NNNNNNNNNN ............................ TTTGTCGCCCAGCAACCATGCAGCATATAAATTACCC 2502119 28 100.0 37 NNNNNNNNNN ............................ GCTAAGAAAAATTTTGTGCTTCCTTTTCAATTTGCGC 2502184 28 100.0 37 NNNNNNNNNN ............................ CTTTTTGACACATTTCAGCTGTGAATTTTTCGTGTGC 2502249 28 100.0 37 NNNNNNNNNN ............................ TAACCTTCATGAACGCCATCTCGTCAATCAGTGCCTC 2502314 28 100.0 37 NNNNNNNNNN ............................ TGAATATACTGACGACTGTAGAACAATCCTTAGCACC 2502379 28 100.0 38 NNNNNNNNNN ............................ GGTGATTACTCTTGTGGCAAACTACATTCTTGAGTATC 2502445 28 100.0 39 NNNNNNNNNN ............................ TATTGTCCTGGAAAAAGAATTTTGTTTCCAAGAGCTACC 2502512 28 100.0 36 NNNNNNNNNN ............................ AAGTTGATTTGTATTATCTTAACGAGCTAAGAGCAC 2502576 28 100.0 38 NNNNNNNNNN ............................ AACATGTAACAGTTTTTGCAAAAGCCGAAAACGAAAAC 2502642 28 100.0 38 NNNNNNNNNN ............................ CAAGCCAATCCTCACGGTTCTTTCTCCAGAACACCGTC 2502708 28 100.0 37 NNNNNNNNNN ............................ AGGATTAGTTCCAGAAACAATAAGTCGCATTGAGAAC 2502773 28 100.0 37 NNNNNNNNNN ............................ AAATTGCTATGCAAGACGAATGGCAAGCAGACTGCGC 2502838 28 100.0 37 NNNNNNNNNN ............................ TTTAAAAGTTAAACAATTTTCAACTATTTTTGAGATC 2502903 28 100.0 38 NNNNNNNNNN ............................ TAAAGGAGATGATTTGGAATGCGTATTTGCATTGACCC 2502969 28 100.0 38 NNNNNNNNNN ............................ CAAGCCAATCCTCACGGTTCTTTCTCCAGAATACTGTC 2503035 28 100.0 37 NNNNNNNNNN ............................ GAACTTGATTTTGACACAAATTACATTAAAACAATTC 2503100 28 100.0 40 NNNNNNNNNN ............................ TTTTGATTTCTTGCACATTGATTCCGCACTCCAGCAGCAC 2503168 28 100.0 38 NNNNNNNNNN ............................ GTTGAGCTATACAATACAATCTGCAAATCACTGCCCAC 2503234 28 100.0 38 NNNNNNNNNN ............................ CACTACGTGCAAAAAGTCCATAAAAACTCTCACTATTC 2503300 28 100.0 37 NNNNNNNNNN ............................ TTTGTGCTTATTTCTTCAAGCCTTTGAGCTTTTGCAC 2503365 28 100.0 38 NNNNNNNNNN ............................ AGCCACAAACATATTTTCTGTTTCACATACTTTAAACC 2503431 28 100.0 38 NNNNNNNNNN ............................ GAAAAACAAATTGTAACACATGCTTGCAGTGCAGTTCC 2503497 28 100.0 38 NNNNNNNNNN ............................ GATAACCCCCATATTGCAATGGGAGTGTCCCCAAAAAC 2503563 28 100.0 38 NNNNNNNNNN ............................ TGTTTGAGATGAAAGATGGATGGTTTTTGAAATATGTC 2503629 28 100.0 36 NNNNNNNNNN ............................ CTTGTCCTTAACTCTTTCCAAAAATCAAGCAACTCC 2503693 28 100.0 39 NNNNNNNNNN ............................ TACTGTGATGGTTGCTGCTTTGACTGCAAGCACTATGAC 2503760 28 100.0 38 NNNNNNNNNN ............................ ACCCGTATGCATGTAAGCCCTGAATTCCAAAATATTTC 2503826 28 100.0 38 NNNNNNNNNN ............................ CTTGATAAACCTTTTTGCCTTTAAATTTCGATTTCTCC 2503892 28 100.0 38 NNNNNNNNNN ............................ TGTACCATCTCACATGCCTCCTTTTCATTTTCTTGAGC 2503958 28 100.0 38 NNNNNNNNNN ............................ AGGATTGGAATTCTTTCGTCTGCTCTCTGTTGATTTTC 2504024 28 100.0 37 NNNNNNNNNN ............................ AGATTTGTCAAGTTGGGGGAATTGGACGCCGATTGGC 2504089 28 100.0 39 NNNNNNNNNN ............................ TTGTAAAAAAAACGTCTCAGATGTATAACCTCGTCATAC 2504156 28 100.0 36 NNNNNNNNNN ............................ TGAATTATTTCGTTTAGTTCAGTTAATAGTTCAATC 2504220 28 100.0 38 NNNNNNNNNN ............................ CATTCCAGCACGGTATTTAATAGGACAGTTAATTTCAC 2504286 28 100.0 39 NNNNNNNNNN ............................ TTTGGCTGCTTTTCTATGTGTTACGTGAAAACTCAAAGC 2504353 28 100.0 38 NNNNNNNNNN ............................ CCGCACATGTCTAACAAAAGTTTTCTACGTTCTTGCCC 2504419 28 100.0 38 NNNNNNNNNN ............................ TCAAGTTAAAATTTTCGTAGTCTATTAGGACCTCAAAC 2504485 28 100.0 37 NNNNNNNNNN ............................ AAACTTTTTGATGCTGTAATAGTACACAAGCTTGACC 2504550 28 100.0 38 NNNNNNNNNN ............................ AATTGAACAGTTAAAGGCAGCAGAGAACAGGTTTAACC 2504616 28 100.0 38 NNNNNNNNNN ............................ AAAACACAAACATCTGTTTACCTCTTTTTCCTACAAGC 2504682 28 100.0 38 NNNNNNNNNN ............................ CAGCACGTCAAATTTTACAAGAGATAGCAAAAATGCAC 2504748 28 100.0 38 NNNNNNNNNN ............................ CTGGCTTTTTTATTTTATCAAGCACAAAAAACAAGCGC 2504814 28 100.0 40 NNNNNNNNNN ............................ CAGAAGCTTTTTCGCAAAAAGAAGTAAGCCAGTCCGAATC 2504882 28 100.0 38 NNNNNNNNNN ............................ ATTTTCACCGTCCTTTGTTATGAAAACCAGAGAGGGAC 2504948 28 100.0 37 NNNNNNNNNN ............................ GAATAGGGCAACAAAACAAATGCACATACATTCATTC 2505013 28 100.0 39 NNNNNNNNNN ............................ TTAGGAATTGGAAGAGCTACTTTAAGCAATTACGAACTC 2505080 28 100.0 38 NNNNNNNNNN ............................ ACAGCGTTGATAGAAAAGTTAACACAGTTTTTTAATCC 2505146 28 100.0 38 NNNNNNNNNN ............................ TTTTGTTTTCTAAAAGTTTCAATATAGCTTCAATTTCC 2505212 28 100.0 39 NNNNNNNNNN ............................ GTGATATAATATAATTAGAAAGTTGAAAATAAAAAACGC 2505279 28 100.0 38 NNNNNNNNNN ............................ TCATTGACCTGCACCTTCTTTTGTATCACCAGTGTCCC 2505345 28 100.0 38 NNNNNNNNNN ............................ TATAATGCCTATAATTTGTTTTATTGCTTCAGGGCTAC 2505411 28 100.0 37 NNNNNNNNNN ............................ AGGTGTTATTGTTGACCATTACCCAGCTAAAGTTTAC 2505476 28 100.0 38 NNNNNNNNNN ............................ TCAGCCTTGACACATTGCTACATCGCAGCGGCACCATC 2505542 28 100.0 39 NNNNNNNNNN ............................ TGAAGTTTGTGGTAAGTTTGCAAATGAGATGTATCATCC 2505609 28 100.0 39 NNNNNNNNNN ............................ AACTCAATGAACTTGGCACGCCAGTTTGTCGTTTCGTCC 2505676 28 100.0 38 NNNNNNNNNN ............................ CTTCATAAAGTTGTTTAATTGTTGTTGTCGTGTCTGCC 2505742 28 100.0 38 NNNNNNNNNN ............................ GTACAGACAAAAATAAAAAATGAGCACGCTTTTTTTAC 2505808 28 100.0 38 NNNNNNNNNN ............................ ATGGAATAACATATTCTCAAGCAGTCTTTTCATTTGCC 2505874 28 100.0 40 NNNNNNNNNN ............................ AAACGAGACGAAAAACCTGTAGTGTTTTGGCGTCGCAACC 2505942 28 100.0 37 NNNNNNNNNN ............................ AACACTTGAAATTTATCCTGTATCAGACCTGCACGTC 2506007 28 100.0 36 NNNNNNNNNN ............................ ACCTATTAATCTTCAAACTCAAGAAACACCAACAAC 2506071 28 100.0 38 NNNNNNNNNN ............................ TAGATTTTTGCGTTGATATAGGCTTTGTTTCTATTTTC 2506137 28 100.0 36 NNNNNNNNNN ............................ TTTAATCTGGTAGCTGTATTTACAAGGACATTGTTC 2506201 28 100.0 37 NNNNNNNNNN ............................ AAAGGAGGTGTGCTGAATTGATAGTGGCAAGTAAAAC 2506266 28 100.0 37 NNNNNNNNNN ............................ ATTTTTGCAATCCCTTTTGAAAGCACCAAATCCTCTC 2506331 28 100.0 38 NNNNNNNNNN ............................ GGACTACCTGTATCCTTGATAAGAGTTAAAATTCCAAC 2506397 28 100.0 38 NNNNNNNNNN ............................ TTGCCAATCCTGCTTGAACTATAAACTGTTTTGTTGCC 2506463 28 100.0 37 NNNNNNNNNN ............................ TTTCTATGATGTCCTTAATATCAATTATTCTATCTTC 2506528 28 100.0 39 NNNNNNNNNN ............................ TCGCTTGATTGGTGAACTCAACAAATACATCAAAGACAC 2506595 28 100.0 38 NNNNNNNNNN ............................ AGGTAAAACTCAAGGTCGATATGGACAGGGGAAATCAC 2506661 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 148 28 37 TTTACATCCCTCATAGTTCAGATAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [124,239] Score: 0/0.18 # # Final direction: R [0,0.68 Confidence: HIGH] >NC_014721 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =========================== ====== 2654115 27 100.0 39 ATAATCAGGT ........................... CAACTTTTTCCAGGTATTTCTCTATATCTTCCATTTTGT 2654181 27 100.0 38 TCCATTTTGT ........................... CTAAGATGGAGAATTAAGTGAGGGATGGCGTTGTCCAG 2654246 27 100.0 36 CGTTGTCCAG ........................... CTCTACTGTATCAGTATGATGAACTGGTATTGCTGG 2654309 27 100.0 39 GTATTGCTGG ........................... CTTCAGGACGGCAGTCAGGAAATTTTCCAAAACATAGGT 2654375 27 96.3 39 AAACATAGGT ..A........................ TTCAATTTTTTAACGATACATTTCTGAACAATAATCGGT 2654441 27 100.0 39 AATAATCGGT ........................... TTTGAGCACTTTGTTCATCTCATGCACTGCTGCTTCGGT 2654507 27 100.0 CTGCTTCGGT ........................... CTATTTCCCTG ========== ====== ====== ====== ========== =========================== 7 27 38 TTGTAGCCTCCCCTTTGGGGATTGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:51.85%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-7.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1817,533] Score: 0.18/0.18 # # Final direction: F [5.09,0.37 Confidence: HIGH] >NC_014721 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2652729 30 100.0 36 TTATCTACGG .............................. GCAAAAGTCTGCAAACATAGACGGCTCAAGGCTTAG 2652795 30 100.0 37 CAAGGCTTAG .............................. TCTTACTTCCTTTTGTTGTAATAAAGATTCTTTCACC 2652862 30 100.0 36 TTCTTTCACC .............................. ACAAAAACAATACAATGTGATAATATATAATCGTGA 2652928 30 100.0 36 ATAATCGTGA .............................. TAAAGTAAACAAAAAACCATTTTACCAATCCCATAT 2652994 30 100.0 37 AATCCCATAT .............................. GCATAATAAGAAGGTTTAAAAAAATTGAATATACTAT 2653061 30 100.0 38 AATATACTAT .............................. TCTATTTGGTTGTCTAAAAACGTGTCAAGTAGTTTATC 2653129 30 100.0 35 GTAGTTTATC .............................. CTATACATAGCAGTATCCAACATAGGTAATGAATA 2653194 30 100.0 36 GTAATGAATA .............................. CCCCTACCCCCGCCGCCAACCTTCCATTTCTTTCCC 2653260 30 100.0 37 TTTCTTTCCC .............................. CTGATAAGTGAATTCTTCACCAAGCGCTTGAACAACG 2653327 30 100.0 34 TTGAACAACG .............................. ATGTAAAGCAACCTGAACATTTTTTGCTACGTCG 2653391 30 100.0 36 TGCTACGTCG .............................. CTGGAGGAAGTGCTCCACTGTTGGGAGGAGTAGAAC 2653457 30 100.0 36 GGAGTAGAAC .............................. CTATTATACCCACCTTCATATCCATGTCAACCCTGA 2653523 30 100.0 35 TCAACCCTGA .............................. GCTGCTTGAAGTTTGAAATAGTCTTTTTTGTGCTT 2653588 30 100.0 36 TTTTGTGCTT .............................. GTACAATGAAGCGATAAACAACTAAATTGCACAAAA 2653654 30 100.0 38 TTGCACAAAA .............................. TTTATGTATGTCAATAGTTTTTTAAACTTTCTCTACAA 2653722 30 96.7 34 TTCTCTACAA .........................A.... ACCACAGACCTTAAATACCCAGACAAAGCCTTCA 2653786 30 100.0 35 AAAGCCTTCA .............................. AAATTTGCCATTATAACATTGTTGTTTTTGTGTCC 2653851 30 100.0 36 TTTTGTGTCC .............................. ATAATTTAGATGAATTTAAAAAATATTTAATGACTA 2653917 30 100.0 35 TTAATGACTA .............................. TTAATACTCAACATCCTATCTATATTCAAAGCCGA 2653982 30 100.0 TCAAAGCCGA .............................. CATTATTGCT ========== ====== ====== ====== ========== ============================== 20 30 35 GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [5,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-7.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [431,1055] Score: 0.18/0.18 # # Final direction: F [4.91,0.92 Confidence: HIGH] >NC_014721 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2666352 30 100.0 37 TATCTACGGG .............................. CCTATAGATATGATAAGAATGAAGTATAGAATTAAGG 2666419 30 100.0 35 AGAATTAAGG .............................. AAGTTGACTGGATAGTTGTATTTTCTAATACTTCG 2666484 30 100.0 37 TAATACTTCG .............................. TAACAAGAAATTCGTAGAAACGTTAACAGGACAAAAG 2666551 30 100.0 35 AGGACAAAAG .............................. AGATTTCAATTGATTTGGATGAGATATATTTGTGG 2666616 30 100.0 36 ATATTTGTGG .............................. GCTTGTCTGTTAGTGCTTCTCTTTTTTCCTCTTGCG 2666682 30 100.0 36 TCCTCTTGCG .............................. TGATTTTTTATTGCAATTTTTTTAATTAACCTGAAA 2666748 30 100.0 35 TAACCTGAAA .............................. CAAATCTTTCAGGAATTAGGCATAATGATTTATCT 2666813 30 100.0 36 TGATTTATCT .............................. TTTGTCTTCCAAATCCGGATTGAAGTTTGGTTTGTG 2666879 30 100.0 38 TTGGTTTGTG .............................. CGCCACGCTTCAAAAAATGCACTGTCACTTTACCATCA 2666947 30 100.0 37 TTTACCATCA .............................. AATAAATCTTCATTTAAAAAACTGCTAATCTCATATC 2667014 30 100.0 37 ATCTCATATC .............................. TATATTCGCATGCGCGGCGCCATAGTTCGCCGCCATG 2667081 30 100.0 36 CGCCGCCATG .............................. CTCATTTTTTTTACTCCCCCTTTTGTTTTTTCTTTT 2667147 30 100.0 36 TTTTTCTTTT .............................. TCAAATGAAACAATAAACTTTTCAAAGTCAAAATTA 2667213 30 100.0 35 GTCAAAATTA .............................. TCGGATTTGTAGGCAATGCTGTTACGGCTAAACTG 2667278 30 100.0 36 GGCTAAACTG .............................. TATTCTTTGATGTTAAATTCTAAGTCGTTATATAAA 2667344 30 100.0 36 GTTATATAAA .............................. AAAGTAGTTCTTTAATTTTACGTTGCAGAGCTTTTT 2667410 30 100.0 36 AGAGCTTTTT .............................. AACTGTCCATAAGCTAAAAGCTTTTTCACAACTTCC 2667476 30 100.0 38 CACAACTTCC .............................. CACCACATTGCTTGCTACTTCAGTAAGCAAAAGATATT 2667544 30 100.0 37 AAAAGATATT .............................. TAGTAATCTCTGCACCATTTAATATTACTTCATATGA 2667611 30 100.0 35 CTTCATATGA .............................. TGAGTGGCCAAATAGTTTCACGTCAACCGTACAGT 2667676 30 100.0 35 ACCGTACAGT .............................. ATTGCTGGAAAATTGTAATTCATTTTGTTTTCACA 2667741 30 100.0 34 TGTTTTCACA .............................. GTATGGTTTGTTGGTGTTTTTGTGCTTGCTTTGG 2667805 30 100.0 37 CTTGCTTTGG .............................. GGATTATTGCATTCGGTAAAGTATGAATACAACATTA 2667872 30 100.0 37 TACAACATTA .............................. TCTGTTAGAAGTTGGCAGCCAAGCCTTATACTTGTAG 2667939 30 100.0 ATACTTGTAG .............................. TTAATCACTC ========== ====== ====== ====== ========== ============================== 25 30 36 GTTTGTAGCCTTCCCGTTGGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [5,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.80,-5.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [434,869] Score: 0.18/0.18 # # Final direction: F [4.87,0.55 Confidence: HIGH] >NC_014721 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2669623 30 100.0 37 NNNNNNNNNN ...........C.................. ACAATTAAAAAATTTTCTTCAATACAAACATCATCAG 2669690 30 100.0 37 NNNNNNNNNN ...........C.................. TCAAAGTAATATCGAATATCCCCAATTATCCCCTCTG 2669757 30 100.0 36 NNNNNNNNNN ...........C.................. AAGCGTGATACAGCTTATTATATGGCATTTGTAGAG 2669823 30 100.0 36 NNNNNNNNNN ...........C.................. ACAATTCCTGATATATTTCCATATCCATACTGCAAG 2669889 30 100.0 38 NNNNNNNNNN ...........C.................. CTAATTTATCAAGTATCTCATTGTACTTCTGTTGATTT 2669957 30 100.0 37 NNNNNNNNNN ...........C.................. AATTTTTTGCAGTAGCGACAGCTTCAGCAAAAAGCAC 2670024 30 100.0 35 NNNNNNNNNN ...........C.................. TACTTCTTAATGCGTTGCTTTTATTCCAGCGGAAA 2670089 30 100.0 34 NNNNNNNNNN ...........C.................. TAATTAAAACTAGCAATTTAATAATCCCCCGCAA 2670153 30 100.0 39 NNNNNNNNNN ...........C.................. CCATCAATCTTATTGCCGTCTATCTCTGTTGTCCTGCCC 2670222 30 100.0 37 NNNNNNNNNN ...........C.................. AGAACTTTTTTGAGCTCAGCTTTGTTAACCTCTTCTT 2670289 30 100.0 36 NNNNNNNNNN ...........C.................. ATAGCTGAATAGCTTCATCTTTAATTTTACCTTTGT 2670355 30 100.0 36 NNNNNNNNNN ...........C.................. GTAATTCCTTCGCTGACGCTCCATTTAAATTCGCTA 2670421 30 100.0 35 NNNNNNNNNN ...........C.................. TTTTTTCTTCTCTGCTAAATGCTTGTGGCTTACTC 2670486 30 100.0 37 NNNNNNNNNN ...........C.................. ATTGTAAAAGATATTCGATATTGCCTAAATCATTCAT 2670553 30 100.0 36 NNNNNNNNNN ...........C.................. TCACCCTTCTTCCCATCCCTTATATCTAACAATACA 2670619 30 100.0 36 NNNNNNNNNN ...........C.................. AAGAAATTGAATCAATAAAAGACATACCAGAAGTTG 2670685 30 100.0 35 NNNNNNNNNN ...........C.................. TCTTTTCTTTACTCTCACTATCAATTCTAATCTGC 2670750 30 100.0 37 NNNNNNNNNN ...........C.................. GATAAAATGGTAAGAAATGGTAGCATGAAGATAAAAT 2670817 30 100.0 35 NNNNNNNNNN .............................. TAAAAGACCTCGATTGTTGCACCATGCTCTTTACC 2670882 30 100.0 37 NNNNNNNNNN .............................. TCAGTACCAAATCTGTTCTTGATATATTCAATCACCT 2670949 30 100.0 37 NNNNNNNNNN .............................. GACCCTCTAATTGTTTTTGTTTTGACTGATAAAATTT 2671016 30 100.0 35 NNNNNNNNNN .............................. GCAAATTATGGAATTTCAGCATCCCAATTGGTAAA 2671081 30 100.0 36 NNNNNNNNNN .............................. ATATCTCAGGTAATCTCAAAATCTCAGAAAAAACAA 2671147 30 100.0 37 NNNNNNNNNN .............................. CAACATTGTCAATATCCATTTTTCTGTTTGTAAAAAC 2671214 30 100.0 35 NNNNNNNNNN .............................. ATGATTCTGGTAAAAACACACTGAGTTCTGACCGT 2671279 30 100.0 36 NNNNNNNNNN .............................. ATAGCACAAATAGTGTCAGACATGGCTACAAAATAT 2671345 30 100.0 36 NNNNNNNNNN .............................. TATTTTAGCTTTGTGGTATGGATTTACCAAAGCAGG 2671411 30 100.0 35 NNNNNNNNNN .............................. TGAACGTCTGAGAGGCATTTTAATGGCATGGTGGT 2671476 30 100.0 38 NNNNNNNNNN .............................. TTGAAAACTTTGACCATTCATCTTCTTGATTTTGGATG 2671544 30 100.0 36 NNNNNNNNNN .............................. CTTTCACAATTTTATAATTCCTATGGGTAAAAGTAG 2671610 30 100.0 35 NNNNNNNNNN .............................. GTGCCCGGACAATCTGTTGCCATGAGGTCTCTATG 2671675 30 100.0 35 NNNNNNNNNN .............................. TAAAAAGGAATTTGAATATGCAAGACTACGACAAA 2671740 30 100.0 35 NNNNNNNNNN .............................. CTCTAATATACCTATTCGTCAAGAAGTCATTGAAA 2671805 30 100.0 36 NNNNNNNNNN .............................. AAGTCCTGTAACTCTTTAATTCTTTTTGCCAAGTGC 2671871 30 100.0 35 NNNNNNNNNN .............................. TGGGATGGAGTAGTACTGATGGCTATGAAGTTTTT 2671936 30 100.0 35 NNNNNNNNNN .............................. CCCCACTTGAATTGCGAAAAGTAATTGAAACCTAT 2672001 30 100.0 39 NNNNNNNNNN .............................. TGGTGACGAAAATGAAAGAGTGAAAATATTCACTGTAGG 2672070 30 100.0 35 NNNNNNNNNN .............................. TAAAAAGGTATTGCAATTATTGTCCTATGCACAGA 2672135 30 100.0 36 NNNNNNNNNN .............................. ATAGATTTCATTTCGCAGCCAATAGAGCGGTTTATA 2672201 30 100.0 36 NNNNNNNNNN .............................. CTCAATTTCTGTTTCTCTTTTCTCAATTATTCTTGA 2672267 30 100.0 36 NNNNNNNNNN .............................. TATAATAGCCCATTCATCAAAAACTTTTTCATCGAA 2672333 30 100.0 36 NNNNNNNNNN .............................. TATAATAGCCCATTCATCAAAAACTTTTTCATCGAA 2672399 30 100.0 37 NNNNNNNNNN .............................. CACAAAATTATAGTTTGGCGCAATGTAAACACGAACA 2672466 30 100.0 38 NNNNNNNNNN .............................. TCTATGTCTTCTTCAAGATACATATCGAGCAGCTTATT 2672534 30 100.0 35 NNNNNNNNNN .............................. ATACTTTTTTTCTCACGGTCTGTATGGCCTGTTCA 2672599 30 100.0 37 NNNNNNNNNN .............................. TTTCTAACAGCGTTCAAATCAGCTGCGTCCTCGACGA 2672666 30 100.0 37 NNNNNNNNNN .............................. ATTTTTCTTTGCAAGAATGGTTGATTAACATAATTAG 2672733 30 100.0 35 NNNNNNNNNN .............................. AAATAGTTCTCCCAAGATAAATAGAGAACATTTAG 2672798 30 100.0 36 NNNNNNNNNN .............................. GCTAAAGCAATATCAGAAGTATCATGGTTTGAATTT 2672864 30 100.0 36 NNNNNNNNNN .............................. TTTTCTACATTGTAATAATACACTTTTATAGGAACT 2672930 30 100.0 36 NNNNNNNNNN .............................. AAAATTTTGGGCAGAGCTTGGATGGATTAAAGCTCA 2672996 30 100.0 36 NNNNNNNNNN .............................. TATTAAACGATTATGAAAATAATTTGCCAATTGATA 2673062 30 100.0 36 NNNNNNNNNN .............................T AGTAGCCTTCCCTTTGGGGATTGAGGCTTAAAGCCT 2673128 30 100.0 37 NNNNNNNNNN ...........C.................. TGTGTAATCACTACGTCAAAGGTTATTCCTTCTCCGT 2673195 30 100.0 36 NNNNNNNNNN ...........C.................. CTGAGATAAAATCATTTAATTTAAGTCTTACATTAG 2673261 30 100.0 36 NNNNNNNNNN ...........C...T.............. TCTTTTTTGCTTACTCTTGGTTTAAATTCTTTTCTC 2673327 30 100.0 38 NNNNNNNNNN ...........C...T.............. CATGCAGTTAATGTTGATTACAGTTAATATTATAATCG 2673395 30 100.0 33 NNNNNNNNNN ...........C...T.............. ATTTATAGAATTTTTCTGCCCAGTTCTTCATAG 2673458 30 100.0 35 NNNNNNNNNN C............................. GAGAACCAACCTCAAATGCATTGTCACATGTTGCT 2673523 30 100.0 37 NNNNNNNNNN .............................. TCAGTACCAAATCTGTTCTTGATATATTCAATCACCT 2673590 30 100.0 36 NNNNNNNNNN .............................. CTTTCACAATTTTATAATTCCTATGGGTAAAAGTAG 2673656 30 100.0 1 NNNNNNNNNN ...........................GGT NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 62 30 36 GTTTGTAGCCTTCCCGTTGGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [5,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.80,-5.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [60.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [522,3289] Score: 0.18/0.18 # # Final direction: F [5.55,0.55 Confidence: HIGH] >NC_014721 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2689674 30 96.7 35 CTATCTACGG .............................T TTTTTATCATTGTTATTTTTTTAACAATGCATTGA 2689739 30 100.0 36 AATGCATTGA .............................. ATTACAACATAGGTAATGTTAATGATGAAAGAGCTA 2689805 30 100.0 35 GAAAGAGCTA .............................. ACTTTACTTCACAGGGTAGAAAAATTATTTTAGGG 2689870 30 100.0 36 TATTTTAGGG .............................. CCGCTTTTATAATGTGCTTCATAGGCTTTGACCATA 2689936 30 100.0 40 TTTGACCATA .............................. TCCTCTATTTTATCGAGAGCCCCACGATAGGGTCTCTCGA 2690006 30 100.0 35 GGTCTCTCGA .............................. ATATAATATAAAACCGTATCAAAATAATACCTAAT 2690071 30 100.0 36 AATACCTAAT .............................. TCTAACTTTTTTGTTTTTACTAATCCTTTAACATTG 2690137 30 100.0 34 TTTAACATTG .............................. GATGAAGATTTATCGCAATACTTTGAAGAAGAAA 2690201 30 100.0 34 GAAGAAGAAA .............................. TAAATTTTGGTCGGGTGCAAGTAAATCATTAAAA 2690265 30 100.0 36 ATCATTAAAA .............................. ATTCCTACTAAAATACTCGGTTTTTAATTCCTACCA 2690331 30 100.0 36 ATTCCTACCA .............................. TGACACGATGCGGATATTTAACCTTGACGAAATTAA 2690397 30 100.0 36 ACGAAATTAA .............................. GAGAAGACTGTGTAATACATTTGGAGGGAAGTAAGA 2690463 30 100.0 34 GGAAGTAAGA .............................. TTCCCGAATAACTGAAGATAGAGCTATTTCGTCA 2690527 30 100.0 36 TATTTCGTCA .............................. TTTTTTCAGAAGCTTATCTAAGTTGAAATAGATAGT 2690593 30 100.0 36 AATAGATAGT .............................. GGGTGAGCTAATACGCTCATCCCTTTAGCGTTTATA 2690659 30 100.0 36 AGCGTTTATA .............................. ACTTTTTGATTGACGATGTTGATGCTGCACAGGCTA 2690725 30 100.0 36 GCACAGGCTA .............................. TCGTTCTCGTTGTAGGCCATTGCGAACTGTCCTATA 2690791 30 100.0 34 CTGTCCTATA .............................. CCACAGTGTTCACAGTAAAAGTACTCAGGATGAA 2690855 30 100.0 37 TCAGGATGAA .............................. CACAAAATTATAGTTTGGCGCAATCACGGTCTCCTAA 2690922 30 100.0 36 GGTCTCCTAA .............................. CGAAATACTTTACCATATCGGTAATTATATTTTACC 2690988 30 100.0 37 ATATTTTACC .............................. GAATAAATACTTCTCTACCACACCTTCTACAAATATA 2691055 30 100.0 36 TACAAATATA .............................. TCGATATCAACAACAAAATCTATTATCATTTCGTCA 2691121 30 100.0 36 CATTTCGTCA .............................. AAATAATGGAACAGAAACTCTTGGAATTAAATCAGC 2691187 30 96.7 37 TTAAATCAGC ..................A........... AAAAACTTAATGTGCCAAATCTACAGCTTATTCAAAA 2691254 30 100.0 37 TTATTCAAAA .............................. TCGTTCACATAATTTATCAATCCCCACACCGCCATGG 2691321 30 100.0 35 ACCGCCATGG .............................. AGACAAATAGTAGTCTGCTACCTCTGCCCAGATCA 2691386 30 100.0 GCCCAGATCA .............................. ACTATATTTGCTAAATCTTGATGCCCGATGCAAGA ========== ====== ====== ====== ========== ============================== 27 30 35 GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.30,-4.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [881,266] Score: 0.18/0.18 # # Final direction: F [5.05,0.41 Confidence: HIGH] >NC_014721 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2695882 30 96.7 37 ATCTACGGGG ...............G.............. TAAAGCTTCTCTCTGTTGTCATCTGCCTCCATGAAGG 2695949 30 96.7 35 TCCATGAAGG ...............G.............. CATTTTGAAAAGCCCTACTTATATAGCGCATTACG 2696014 30 100.0 35 GCGCATTACG .............................. TCTTGCATATTGACCAGCAGCAGAAATACCTAAAG 2696079 30 100.0 35 ATACCTAAAG .............................. ACTTTCTCCATCATTGTTATCATCCTCGATGTCGT 2696144 30 100.0 36 TCGATGTCGT .............................. CCCTACTATACTCTCGCCACCGCAAAAACTGCAAAG 2696210 30 100.0 36 AACTGCAAAG .............................. AGTTCAAACACTGCTGCTTCGATAAGTTGTTCAGCT 2696276 30 100.0 34 TTGTTCAGCT .............................. CGACGGTGCTGAGAGGTTCAGTTCCTGGTTTCAT 2696340 30 100.0 35 CTGGTTTCAT .............................. CTTACCTGCATAGCGTCTATTTCCCACCATTGCAC 2696405 30 100.0 36 ACCATTGCAC .............................. TTACCTATTGGCTATCAATTTCAACCGATAGCTTTG 2696471 30 100.0 35 GATAGCTTTG .............................. TTCTTCATCTATCACTTCTACAGCTGGTGGATTGT 2696536 30 100.0 35 GGTGGATTGT .............................. CAGCTAACCCTTACCCTTACATTTCCCACTGTTAG 2696601 30 100.0 35 CCACTGTTAG .............................. AAATTGCTGTAGTAAACACCGGGAAAATACAACCT 2696666 30 100.0 36 AATACAACCT .............................. AGATTTTGAAAAGCATTGAAGAGTCGCTTAGAGCTC 2696732 30 100.0 36 CTTAGAGCTC .............................. AGGTGTGTACTTTACAAATCTGTCATCTTTCAAAAG 2696798 30 100.0 36 CTTTCAAAAG .............................. TCAAAACATACACCGCATTTACTACACTGTTTACTA 2696864 30 100.0 36 CTGTTTACTA .............................. AGAAAACTAAAAAATGGTTTGTCATTTGGTCGAGTA 2696930 30 100.0 36 TGGTCGAGTA .............................. TCTTTTGTGAACTCATGTAAAGAATCATAACTCTTA 2696996 30 100.0 35 ATAACTCTTA .............................. ACATTCGGATTTCTAAGGAGAGATTGGAGAATGTT 2697061 30 100.0 36 GGAGAATGTT .............................. AAAGCTATTATCCGTCAGTCCGCTTTCAAATTGTGG 2697127 30 100.0 37 CAAATTGTGG .............................. TTAAGTTTACAAACATAGACTATCTTAATAGTTACAA 2697194 30 100.0 ATAGTTACAA .............................. ACAGAACAATGATGGCAAACGCTGAAGAAATAGATG ========== ====== ====== ====== ========== ============================== 21 30 35 GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [5,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-7.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [60.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [599,369] Score: 0/0.18 # # Final direction: F [4.77,0.74 Confidence: HIGH] >NC_014721 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2708917 29 100.0 37 CTGAAGAAGA ............................. CTAAAAAGCTTGTGAATTTTATCTATTGCATTAAAAA 2708983 29 100.0 36 GCATTAAAAA ............................. ATTATGCTTTATCATCTATGATTATAGAAATCTTGT 2709048 29 100.0 36 GAAATCTTGT ............................. GTCGGGTTGGGAGCGTGCTCATCATCAAACAGTCTT 2709113 29 100.0 37 AAACAGTCTT ............................. ACTAAATAGTGAATTTGAAGAACTACAACAAGCACAG 2709179 29 96.6 38 ACAAGCACAG .........................T... TTGTTTCGCTTTTTTCACGTTTGGTTAGACAAATGCCT 2709246 29 100.0 38 ACAAATGCCT ............................. TTTGCTATGCTGCTGAGGTTGTATAGAACTTTGAAAAG 2709313 29 100.0 38 CTTTGAAAAG ............................. TCATCACAGAGTATACGTTTTAAAAATCAATAAAAATT 2709380 29 100.0 37 AATAAAAATT ............................. ATGTCATGACGTTGTGAACTGGCACAACAAGAAAATC 2709446 29 100.0 37 CAAGAAAATC ............................. TTTAACAGGGAGGAATAATACATGGGAAAAATATTTC 2709512 29 100.0 38 AAAATATTTC ............................. AATGCTGTTCCTGAGATATACGTAAGACAGCATGTTGT 2709579 29 100.0 38 AGCATGTTGT ............................. TATGCAGATAAAAATTCCGTTTCAGGAAATGCTTATTA 2709646 29 100.0 37 ATGCTTATTA ............................. ACATTCTCAGTATCACCCAGACTGAAGTAAAAACTTT 2709712 29 100.0 36 TAAAAACTTT ............................. TTTTGAAAGATATTCATTTGAAAGATATTCATTTAC 2709777 29 100.0 36 ATTCATTTAC ............................. AGACGCGGCACTGATGTAATGTTTGATTAAAAAGAA 2709842 29 100.0 38 TTAAAAAGAA ............................. ACAGGACAAATAGACCCTGCAACAACGGATGTAGCTGT 2709909 29 100.0 37 ATGTAGCTGT ............................. TATCTATAATTTCTTCCATTAGCTTTTTCTCCAATTC 2709975 29 100.0 37 TCTCCAATTC ............................. CCTTAAACATGTCGTTAATGATTTCTCCTATCTGCTG 2710041 29 100.0 36 CTATCTGCTG ............................. TAAAAACTCTATTTCAGTTTTATTTAATTTCTCTTT 2710106 29 100.0 36 ATTTCTCTTT ............................. TTCTATAAAGTAAGGTCCTGCTGTTCCGTGAAGCTC 2710171 29 100.0 37 CGTGAAGCTC ............................. TCCAAATTTGGATTTGGTATTAATCTTGTTCTAACAA 2710237 29 100.0 37 GTTCTAACAA ............................. CAACCTCGTTCAGTTAACATCTTTTATTCCTCCTTTT 2710303 29 100.0 38 TCCTCCTTTT ............................. CAATATAGTGGAAAAAATAAATTGTCTGTTTGTTATTC 2710370 29 100.0 38 TTTGTTATTC ............................. TTATAGTTATATTTTCTCAACTGAAAGCCTTCTGTCTT 2710437 29 100.0 36 CTTCTGTCTT ............................. TAAAACTACCGATGAGCTTATATCCATTACAAACTG 2710502 29 100.0 36 TTACAAACTG ............................. CTCAACTTGTAAGTTAGTAAGTGCCCATTTCAATAT 2710567 29 100.0 38 ATTTCAATAT ............................. CTGGAGATGGAAATAATTGAAAGATGTCCAATTGAGAA 2710634 29 100.0 36 CAATTGAGAA ............................. TGGTATGGTGGGATGAAAATCGTCAGCGCTTTGGAA 2710699 29 100.0 37 CGCTTTGGAA ............................. CAAGATATCCTGCACCTGTTCATTGTCTAAATTTGTA 2710765 29 100.0 37 TAAATTTGTA ............................. TAAGCTTCTGGTTCTCCTCTTCAAGCTTCTTGATATA 2710831 29 100.0 35 TCTTGATATA ............................. GATGCATTTGTTCTTGCAGTTGTTCTACATGATAT 2710895 29 100.0 36 TACATGATAT ............................. CGAAAATTTGTTTGAAGGCATTGCCACCGTGAATAA 2710960 29 100.0 35 CCGTGAATAA ............................. GTGGCTAAAAGCTGCGGTGCTTTTGCTTTTTGCAA 2711024 29 100.0 38 CTTTTTGCAA ............................. TTTAAGAGACTGGACGTAGCACTTGGTGGCCTGCAAGA 2711091 29 100.0 37 GCCTGCAAGA ............................. CCGGGCCACCTGTCGCCAACACACTTGATGCAAATAA 2711157 29 100.0 36 ATGCAAATAA ............................. CTGGAACTTGGAAGAGCTGAAAAAGGAGTTTTTGAT 2711222 29 100.0 36 AGTTTTTGAT ............................. ATTAATATGAGTATTCAAATCTTCTAATGTTTTACT 2711287 29 100.0 37 ATGTTTTACT ............................. AAAACCAAGGTGGCACAATGGCAACTCTGCCTGTTCT 2711353 29 100.0 36 TGCCTGTTCT ............................. AACTTTTGCAAACGTCATTTCTAAACTCAAAAAACT 2711418 29 100.0 35 TCAAAAAACT ............................. GTGGAACATCATAGTGACGTGAAACAACCTGTGTA 2711482 29 100.0 36 AACCTGTGTA ............................. AATAAAAAACACCACCGCTATGTATTTGTATAGCAG 2711547 29 100.0 37 TGTATAGCAG ............................. CAATTTCTATCATGCTGCCAAACACTGTTTTCCAAAC 2711613 29 100.0 36 TTTTCCAAAC ............................. GCCTATAGGTGAAGGTTTTGCATGTTGTATATACAA 2711678 29 100.0 35 GTATATACAA ............................. CATATGTGCTTGTAAACTCAAGCATGTTAAAATTA 2711742 29 100.0 36 GTTAAAATTA ............................. AGACACTTTGCCCTACCGCCATGAATTTAGCATCCA 2711807 29 100.0 36 TTAGCATCCA ............................. GGTTGATACATGAAGATAAAACACTTACTGTTGAGC 2711872 29 100.0 37 ACTGTTGAGC ............................. TTTTCAAAATCCCTTCCACAAAAAGTTCAATCATATC 2711938 29 100.0 38 CAATCATATC ............................. CATTGTCAAGCCTCCTCAGAAAAATTTAGCTGCCAGCA 2712005 29 100.0 37 GCTGCCAGCA ............................. CCGCTGGGTCTATTCTTTGTCTTTTCGCACCCTTGAT 2712071 29 100.0 37 CACCCTTGAT ............................. CAATAATAAGGTTGATTGCATCTATGATTAGATTGAG 2712137 29 100.0 36 TTAGATTGAG ............................. CTCTTGTATCACTGCTAAAAGAAGAAAAGTTAAAAG 2712202 29 100.0 38 AAGTTAAAAG ............................. CAGGCTGCTTTGAGCGCATTCTCTGGACTGTAGTTTGC 2712269 29 100.0 36 TGTAGTTTGC ............................. ACGTGTGTCGAATTATAAAAATAAAAATTTTTAGCA 2712334 29 100.0 37 ATTTTTAGCA ............................. TCGAATGTATCTTAGCCAATAGTCGAAACTTTTCGGA 2712400 29 100.0 38 ACTTTTCGGA ............................. CATTTACGCTTATTCCTGTCTGATTAGACAGTTCCAAA 2712467 29 100.0 37 CAGTTCCAAA ............................. CAATAAGCCCTGTTATCGCAGCTATTGCAATTCCAAT 2712533 29 100.0 37 CAATTCCAAT ............................. TTGCATCATTCATAATAAATGCAGCTTTTGCTCTGTA 2712599 29 100.0 36 TTGCTCTGTA ............................. TGAGATATGCTTCTGCTGTCTCCTCAAGAATTTTAA 2712664 29 100.0 37 AGAATTTTAA ............................. ATCAATGTCCTCTGCTAAACTTGCAGAAAACTTGAGC 2712730 29 100.0 37 AAACTTGAGC ............................. CCTGAATGATGTTAGCATTGATTTTTGCTAACCATAA 2712796 29 100.0 CTAACCATAA ............................. CATTAAATCT ========== ====== ====== ====== ========== ============================= 60 29 36 GTTTACATCCCTCATAGTTCAGATAAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.07%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [61.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [220,615] Score: 0.18/0.18 # # Final direction: R [0,0.86 Confidence: HIGH] >NC_014729 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 838751 30 100.0 36 NNNNNNNNNN TT..ACC.T..................... GACCGTGTAGTTCTCCGTGGAGAGATCTTTCGCGCT 838817 30 100.0 36 NNNNNNNNNN .............................. TTCGTTGAGGACGGCACCGACCGCGGGCGACGGGTC 838883 30 100.0 36 NNNNNNNNNN .............................. ACGCTACGGCGAAGAGGTGTCCCGATGACGTCCGAC 838949 30 100.0 35 NNNNNNNNNN .............................. TAAAGTTTGTGCCACAAAAGAAAAGAGAGGGAGAG 839014 30 100.0 37 NNNNNNNNNN .............................. CGTTTCCATCTGAGTCAACGACCACATCGCCGATTTG 839081 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 6 30 36 GCTTCAACCCCACAAGGGTTCGTCTGTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [7,7] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTTTCAGACGAACCCTTGTGGGTTTGAAGC with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-5.20,-6.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [20,154] Score: 0.18/0.18 # # Final direction: R [0,1.46 Confidence: HIGH] >NC_014721 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2731763 29 100.0 38 TTTTCAACCT ............................. TTTTCAACAGCTGTATCTGATGTGGTATCAGTCTCAGG 2731830 29 100.0 40 CAGTCTCAGG ............................. TTCGCGAGGATATAACCCTGAAATATCCAATTCACACCAG 2731899 29 100.0 37 TTCACACCAG ............................. TATTGTAAGACACTGATTTTTATTTAATATTTGCATA 2731965 29 100.0 36 TATTTGCATA ............................. TTAACATCAAGAGAGGTGTAAGCAAACACATCTGCA 2732030 29 96.6 37 CACATCTGCA ...........C................. CCAGCATTTCTTCTGCTGGCAGGGCAAATTCATACCC 2732096 29 96.6 39 ATTCATACCC ...........T................. CATGGGTAATCTACCACTAAGAATTACTCCCATTGGTTC 2732164 29 96.6 CCATTGGTTC ...........C................. TCTTCACCTCC ========== ====== ====== ====== ========== ============================= 7 29 37 GTTTGTAGCCTGCCCTTTGGGGATTGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:51.72%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.30,-3.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [386,432] Score: 0/0.18 # # Final direction: F [5.55,0 Confidence: HIGH] >NC_014721 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2720632 30 100.0 36 ATCAATTATT .............................. TGTACCACTTTGTAAAAGTCGTCTACAGTCTTGCAA 2720698 30 100.0 36 AGTCTTGCAA .............................. ACTCAGAATAATCCCGTCGAAATTATGCGGGATTAC 2720764 30 100.0 38 GCGGGATTAC .............................. GCTTATGTTATTCCCAATACCGAAATAATTTACACTTA 2720832 30 100.0 39 TTTACACTTA .............................. TTTACCTTTTGCTTCAAGATTTCTTTGTCTATGTCTTCT 2720901 30 100.0 37 TATGTCTTCT .............................. TTTTTTATAACCTCCTTTTTGTTTTACAATTATAATT 2720968 30 100.0 36 AATTATAATT .............................. AGTGTTTCATCACTCATCTGTTGAACATCTTTTAGC 2721034 30 100.0 38 ATCTTTTAGC .............................. ATCCCCTTTCACCGTTGAATCCTTAGCCCGCCACTCCC 2721102 30 100.0 39 CGCCACTCCC .............................. TCTGCACTCCTTTCTTGATATCTTCAAACGGGTAAAATT 2721171 30 100.0 39 GGGTAAAATT .............................. TTTCATCGAGGAGTATGACGCTGTATGCAAAAACTGCTA 2721240 30 100.0 38 AAAACTGCTA .............................. GTCCTCAGCGGTGGAACAAGTCCGCAGTACACAACGAG 2721308 30 100.0 35 ACACAACGAG .............................. ATCTGTAGAGGCTGTAGACACATTGGAGTACTTGA 2721373 30 100.0 39 GAGTACTTGA .............................. ATCATTCTATCTTGCTGAGCTACAAGGATTATATCATAA 2721442 30 100.0 38 TATATCATAA .............................. ATCAATTCGTTAAATGTACTATTCAATCTTTCATACTG 2721510 30 96.7 37 TTTCATACTG ...........C.................. GGTAGTACAATAAACCTATACGACTCTGTCAATGCAA 2721577 30 96.7 38 GTCAATGCAA ...........C.................. TGTATCTTTTTTAGCAGTTACCTGTTGCCCAGTCTTTA 2721645 30 96.7 38 CCAGTCTTTA ...........C.................. TTTGCATCATCGTTTTATACTGTTGTGGAGACAGAAAA 2721713 30 96.7 38 AGACAGAAAA ...........C.................. TGCTTTATATCAACTGGCTGGCACACCTGTTGGTCTTG 2721781 30 93.3 37 GTTGGTCTTG ...........C.................T ATCTCTACAAGGTAGTATTCGATTACTGCCCCCTCAG 2721848 30 96.7 40 GCCCCCTCAG ...........C.................. TTTTCCCATTTCTTCTTTGCAGCTTCAAGCCTTAAGGCTA 2721918 30 96.7 37 CTTAAGGCTA ...........C.................. TCTTGTAGTTTAGCTAATTCTTCTTCATTTGTGCTGG 2721985 30 96.7 37 TTTGTGCTGG ...........C.................. CTTTGTAAAAGATATTATCATGATGCTTTTTATAAAA 2722052 30 96.7 36 TTTTATAAAA ...........C.................. TGTTTCATAGCACCTACAATTAATATGTTCCCTGTT 2722118 30 96.7 37 GTTCCCTGTT ...........C.................. TTTTCTGCTCCTAAGTCGTCTAAAACAAGCAATGATG 2722185 30 96.7 38 AGCAATGATG ...........C.................. ATTTCTACACCTCTCTTTTTGCAATATTCAATAAAACC 2722253 30 96.7 37 CAATAAAACC ...........C.................. TGGTCTTTGTCGAACAGAAGCCATGTAAACGCGTCAA 2722320 30 96.7 37 AACGCGTCAA ...........C.................. ATTGTTGATTCTGGACCAAAGCTTATCTCTCTTACAA 2722387 30 96.7 36 TCTCTTACAA ...........C.................. TTTTAAAAGCTTCTCAAGTTCTTTTTGCAGTTCGCT 2722453 30 96.7 37 GCAGTTCGCT ...........C.................. CCCTTATTTTAATTCTGTATATCATTTTTATTTTTCC 2722520 30 96.7 TTATTTTTCC ...........C.................. CAATTTGTTGA ========== ====== ====== ====== ========== ============================== 29 30 37 GTTTGTAGCCTGCCCTTTGGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [5,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.30,-3.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [117,287] Score: 0.18/0.18 # # Final direction: F [5.55,0.55 Confidence: HIGH] >NC_014752 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1894821 36 100.0 30 AGATGAATAT .................................... ACATCAATGCGCGTCTTTGTTCGCTTTCGC 1894887 36 100.0 30 TCGCTTTCGC .................................... AGTGCGTCTAGAATTGCGTCAGATTGAATT 1894953 36 100.0 30 AGATTGAATT .................................... AATTGTCGCGTATGCAGAAACTGTCCAATG 1895019 36 100.0 30 CTGTCCAATG .................................... GCGAAATGGGGTCTTGATTCTGAGATGACT 1895085 36 100.0 30 TGAGATGACT .................................... TTGAATTGCGTTGAAAAGAATCCAGCTGCA 1895151 36 100.0 30 TCCAGCTGCA .................................... AGTTGTACCATGCAATTCACTATCTCTTGG 1895217 36 100.0 30 TATCTCTTGG .................................... TTGACTTTGTGGGCAATACCGGCGCGTTTG 1895283 36 100.0 GGCGCGTTTG .................................... TAATATATAAG ========== ====== ====== ====== ========== ==================================== 8 36 30 ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.00,-0.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [197,752] Score: 0.18/0.18 # # Final direction: R [0.37,0.68 Confidence: LOW] >NC_014721 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 2740675 32 96.9 34 CTTTTCAACC ...............................A TAGTATACCACTTTGCTGTTTTGGGACCAGGTCC 2740741 32 100.0 35 GACCAGGTCC ................................ GGGATTGAATGATGAACAACTCAAAACAGTGCTTG 2740808 32 96.9 36 ACAGTGCTTG A............................... TTTCTTCTACCACTGGTGTTTTTGTTTTTTTAGTTG 2740876 32 100.0 TTTTTAGTTG ................................ GAAGAAGGGT ========== ====== ====== ====== ========== ================================ 4 32 35 TGTTTGTAGCCTTCCCTTTGGGGATTGAGGTG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,13] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.30,-4.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [621,116] Score: 0.18/0.18 # # Final direction: R [0.55,0.78 Confidence: LOW] >NC_014727 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 819369 28 100.0 33 NNNNNNNNNN ............................ CCACGCTTGAGAACTCAATGGTTACTGAGTTTT 819430 28 100.0 33 NNNNNNNNNN ............................ CTATGGCCTTGATGAAAAAGAAGCCGATGAATG 819491 28 100.0 33 NNNNNNNNNN ............................ TGATGGAACAAGATATCTGTTTGCGTCACGACG 819552 28 100.0 33 NNNNNNNNNN ............................ TAAGCCAGCGCGTGGTGGGCTTCATCGATCAAA 819613 28 100.0 33 NNNNNNNNNN ............................ TTCCTCTGCGCTCCCCGGTTGGGTTTTAAAGCT 819674 28 100.0 33 NNNNNNNNNN ............................ CATATCGGGTAAGGCCAACTAGTCAAGTTAAGA 819735 28 100.0 33 NNNNNNNNNN ............................ TAAGTATCAAGATAAAATTTACTGTAATTCCGG 819796 28 100.0 33 NNNNNNNNNN ............................ TCAATACTACTCGATGTACGGGATCCGTTGGCA 819857 28 100.0 33 NNNNNNNNNN ............................ TAATCTAGCACTAACTCTTTGTTTAATTATTTT 819918 28 100.0 33 NNNNNNNNNN ............................ TATCGGATTCTCTCATGATTTTAAATGCCCCAT 819979 28 100.0 34 NNNNNNNNNN ............................ TAACAACTTGACCACGATCAAGGCTCTTGACCAA 820041 28 100.0 33 NNNNNNNNNN ............................ TACAGGCGAATCAAGACAGCAATCAGAAAGGCA 820102 28 100.0 33 NNNNNNNNNN ............................ CGGAGAATGGTGTAACGGCGTGGATTTACGGTG 820163 28 100.0 33 NNNNNNNNNN ............................ TTTACCTTTGAATTTTTCCGTTGATAAGACTTC 820224 28 100.0 33 NNNNNNNNNN ............................ TAAGAGTCCAAGTGTATTGGGTTGGATCGGTGC 820285 28 100.0 33 NNNNNNNNNN ............................ TTACAGCGAAAGCAGAGTTAGAAATATTGCCAA 820346 28 100.0 33 NNNNNNNNNN ............................ TTGTTCTGACGCCGTGACGTAAGCAGATGTCCT 820407 28 100.0 33 NNNNNNNNNN ............................ TCAGAGACACCACTGCGTTGACGGTTTCGCCGG 820468 28 100.0 33 NNNNNNNNNN ............................ TTCTTGATCTCTGCCTTAGCTTGGTCGACCGTG 820529 28 100.0 33 NNNNNNNNNN ............................ CATCGCCAGCTACCTGGCAGCTGAAGAGTCAGA 820590 28 100.0 33 NNNNNNNNNN ............................ CTTAACGGCCATGACATTGAGAAGGCCAAGGGG 820651 28 100.0 33 NNNNNNNNNN ............................ CTCTGCTGTCAAGGAAGCTCTGGCCAACGCTCA 820712 28 100.0 33 NNNNNNNNNN ............................ CTTTTGGAATGCCGGTCTTGCCCGCCCACTGAT 820773 28 100.0 33 NNNNNNNNNN ............................ CAGCAAGGCTACTGTCAAGACTATCTTAGGTAC 820834 28 100.0 33 NNNNNNNNNN ............................ TTTCCTGATTAACAAATTCGTTGGCTTAAACGA 820895 28 100.0 33 NNNNNNNNNN ............................ AGTACTACTGGACAGTAGAAGATGGACAGGTGG 820956 28 100.0 33 NNNNNNNNNN ............................ TGGCTGCCGAAGTAGTCATAGTCGATGCATCCT 821017 28 100.0 33 NNNNNNNNNN ............................ AATTTTGTTGGTTTCAGTTGACCCCGCTTTTGG 821078 28 100.0 33 NNNNNNNNNN ............................ TTTTTCACTCATCGATGCCCTCTCTTCTTCGTA 821139 28 100.0 33 NNNNNNNNNN ............................ CGTCGTTGGCGACGGTGTTGTTTCAGAAGTGTC 821200 28 100.0 33 NNNNNNNNNN ............................ CCTCTAGTAACTCACATACGTCACCAGGGCGAG 821261 28 100.0 33 NNNNNNNNNN ............................ TTTCGAGTTAGCGGTGGTAAAAAGTGAAGTAGT 821322 28 100.0 33 NNNNNNNNNN ............................ TCAAAGCGGGTATTTTGGCTGTTTGCAAAGATC 821383 28 100.0 33 NNNNNNNNNN ............................ TTGAAGAACTGGAGTTGTGAGAAAATGCAAAGT 821444 28 100.0 33 NNNNNNNNNN ............................ CTCAATGGTGGCCCAGGTTGGGCCAATTGTGAC 821505 28 100.0 33 NNNNNNNNNN ............................ TTTACTCTGGCGCATCCCTGCTGCGGACGGCTA 821566 28 100.0 33 NNNNNNNNNN ............................ TCGCAGCCCAGGCCCGGGCTCTCTTGGCTTCTG 821627 28 100.0 33 NNNNNNNNNN ............................ TCGTTGCGCCTTTTTTGTAGATCCCGCCTTTTA 821688 28 100.0 31 NNNNNNNNNN ............................ CTTACTTTTTGTAAGCAAAAAAGCTAACCTG 821747 28 100.0 33 NNNNNNNNNN ............................ TCTAGCAAGCTTTCAAGCTTGCAAACACAATTA 821808 28 100.0 33 NNNNNNNNNN ............................ TTCCCATGAGTTCATGAGAATAGATGGAATTGA 821869 28 100.0 33 NNNNNNNNNN ............................ CGTGTTTAAGGCGTCTATGCATGATTGCCTTTA 821930 28 100.0 33 NNNNNNNNNN ............................ CGCCTTACTAGATAGTAGTAATAACATAATTCA 821991 28 100.0 33 NNNNNNNNNN ............................ CTAATGAAAATGAGTTGATTTCTCTCAAGTCTG 822052 28 100.0 33 NNNNNNNNNN ............................ TTAGTTTGATTCGGGCTGAATTGAAAGCACCAA 822113 28 100.0 33 NNNNNNNNNN ............................ TCACCGATTTTTCCGGAGATACGCATAAAGACC 822174 28 100.0 33 NNNNNNNNNN ............................ TTGTCATTGTGAATCAGTACACCGAGACCATCA 822235 28 100.0 33 NNNNNNNNNN ............................ TGGCCGTGCCGCCATTTACGGTGTCCCACAGTT 822296 28 100.0 33 NNNNNNNNNN ............................ CTTGACACCGTTTTTTAGTAGCAAGCCCGGGGA 822357 28 100.0 33 NNNNNNNNNN ............................ TTAAGAAGTTTTTTTATTTTTTCTTTTCGGCTA 822418 28 100.0 33 NNNNNNNNNN ............................ TTTCAGTTTGCGAAATATCGAACACGCAAACCG 822479 28 100.0 33 NNNNNNNNNN ............................ CTTCACAAGCGTTCTTAGTCAAACCATCGACTA 822540 28 100.0 33 NNNNNNNNNN ............................ GAAGGGTGAGACCAACGCACTGGCAAGATGTGG 822601 28 100.0 33 NNNNNNNNNN ............................ TCAAAGTTAGGGTTACGGCGCCAGGCCTTAAGC 822662 28 100.0 33 NNNNNNNNNN ............................ TCACTGGAAATGGAGGATTAGATGGCGAAAACA 822723 28 100.0 33 NNNNNNNNNN ............................ TCACCAAGAAGAAAAGCTTGTAGAGGGCTTATA 822784 28 100.0 33 NNNNNNNNNN ............................ TTATACGCGTTTCCGTCGGTAATGCAAGCATAA 822845 28 100.0 33 NNNNNNNNNN ............................ CCCTCACAAATTTTTCCAGTTCCTGGTGTTCTT 822906 28 100.0 33 NNNNNNNNNN ............................ CTGCCAACACTGCAGACTTACATGATCTGCTGG 822967 28 100.0 33 NNNNNNNNNN ............................ TGATCAGAACTAGAATCTACCCGGTTACGGGCT 823028 28 100.0 33 NNNNNNNNNN ............................ CCCTCACAAATTTTTCCAGTTCCTGGTGTTCTT 823089 28 100.0 33 NNNNNNNNNN ............................ CTGCTGAATGAACTCATCAACCGTGATGCTGCT 823150 28 100.0 34 NNNNNNNNNN ......................GTGAT. CCTCAGACTATTCTACTTCAGACTTCATCTATAC 823212 28 100.0 33 NNNNNNNNNN ............................ TAGCTCGTCTTGAACAGCATTTAGTAAATCGCG 823273 28 100.0 1 NNNNNNNNNN ............T.T.......CA.... NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 65 28 33 GTATTCCCCACGCAAGTGGGGGTGATCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-11.90,-10.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [31,294] Score: 0.18/0.18 # # Final direction: F [0.78,0.55 Confidence: LOW] >NC_014734 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 223908 36 100.0 30 NNNNNNNNNN ..A..GT.A........................... AGAAAAACATGTGGGTATGTGCATGTCCTT 223974 36 100.0 29 NNNNNNNNNN ...T................................ TATTACTGCTGCAATGCAGATTGGCGTAT 224039 36 100.0 29 NNNNNNNNNN .................................... TATTACTGCTGCAATGCAGATTGGCGTAT 224104 36 100.0 30 NNNNNNNNNN .................................... GAAAACGAAAATTATAACTTCAATAAATTC 224170 36 100.0 30 NNNNNNNNNN ..............T..................... AGTAAAACCGTACAATGGAGAAGATAACGT 224236 36 100.0 30 NNNNNNNNNN .A.........................G........ AGCGGTGCGGATTTGAGCGATGCGAATTTG 224302 36 100.0 30 NNNNNNNNNN ..................A................. GAATTAGGATTATGAGTTTATATAGTTTGA 224368 36 100.0 30 NNNNNNNNNN ..................A..........T...... TAAACATTAAAACAATAAACGGAAGTTCGA 224434 36 100.0 30 NNNNNNNNNN ................................T... AAAGCAAAAATGAACACAAAACAATTTGAA 224500 36 100.0 30 NNNNNNNNNN ...T...........G.................... TACAGCAGTAAGCGGAAACACTCAGGCAAT 224566 36 100.0 30 NNNNNNNNNN .................................... GCCGTAAAAAATCCACACAACGATAAGATG 224632 36 100.0 30 NNNNNNNNNN ...T............................T... CTCTTACTGGCTGGTGCCGGGCTTGCTGCA 224698 36 100.0 30 NNNNNNNNNN ..........................T......... AGAAAGAGTGATGAACGACGAGCAGGATAT 224764 36 100.0 30 NNNNNNNNNN ..........................T......... TTACACCTGATCAATGGAAATTGCTTAGTG 224830 36 100.0 30 NNNNNNNNNN .................................... TGTGATTAATGATATTACCGTAGCTAACGG 224896 36 100.0 30 NNNNNNNNNN ................T.A........G........ AAAACAACCTGCATGGATAAATTATATGAC 224962 36 100.0 30 NNNNNNNNNN ...C...C............................ TAAAAACATATTTGCTGAAGACTATGGAAG 225028 36 100.0 30 NNNNNNNNNN ..................A................. TGCTATTCGGAATAGATTTTTACCCCACCA 225094 36 100.0 30 NNNNNNNNNN .............................T...... TGGGATTATGAAATAACCGATTATAAACTA 225160 36 100.0 30 NNNNNNNNNN .............................T...... AGAAATCAAAAATTGATTCTTCAGTAGCTT 225226 36 100.0 30 NNNNNNNNNN .............................T...... CGAATCCTAATGGTTATATTACTGCTTCAT 225292 36 100.0 30 NNNNNNNNNN .............................T...... TAAATTGAAAATTTCTGGACAAGCTCCAGT 225358 36 100.0 30 NNNNNNNNNN ..................A................. AAACGAATCACAGAACATGTGAACCTGGTA 225424 36 100.0 30 NNNNNNNNNN .................................... AGATGATAACGTAGGCAACATCCCTGATAA 225490 36 100.0 30 NNNNNNNNNN ...T................................ CGTTATTCAGGAGAGAGTTTCAAAGAGTAT 225556 36 100.0 30 NNNNNNNNNN ...T..............A................. TAAAACATTGGCTAATAACAGAACTAGGGC 225622 36 100.0 1 NNNNNNNNNN ...T..............A................. NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 27 36 29 GTTGTAGTTCCCTTCAATTTTGGGATAATCCACAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-4.70,-4.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [12-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [61.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [100,93] Score: 0/0.18 # # Final direction: R [0,0.68 Confidence: HIGH] >NC_014802 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1485331 36 100.0 30 NNNNNNNNNN A................................... AGCAGAAGTTAATGTAAGTGCCACTGGTGC 1485397 36 100.0 30 NNNNNNNNNN .................................... AAAGAGCGGTGAGAATAACGATTTAGGTTT 1485463 36 100.0 30 NNNNNNNNNN .................................... GGAGAATTGTTTCAAAGATGTGTTTATTTT 1485529 36 100.0 30 NNNNNNNNNN .................................... TAAAAAACCGCTAAGACAAAACTACCGGTT 1485595 36 100.0 30 NNNNNNNNNN .................................... AAACTTGACGCTAGAAGTATAGCACTAGAA 1485661 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 6 36 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:77.78%AT] # Reference repeat match suggestion: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [546,263] Score: 0.18/0.18 # # Final direction: NA [0.68,0.68 Confidence: NA] >NC_014738 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1695982 36 100.0 30 TTCATGATCT .................................... ATAGCAGTAGAACCATCAAACGCTGTGGCT 1696048 36 100.0 30 CGCTGTGGCT .................................... CGGCAACAAAAGAAGGAGAAGAACAAAGCA 1696114 36 100.0 30 GAACAAAGCA .................................... AGCAACATATACGAAAATCCAGAAATCTTA 1696180 36 100.0 30 AGAAATCTTA .................................... TGTGCTTCCTACAACGAGTAGCGTTCCTTT 1696246 36 100.0 30 GCGTTCCTTT .................................... TTAACTAAGTTACCTAGAAGTATAAATGAA 1696312 36 97.2 30 TATAAATGAA ...................A................ TCTGCATCTACGAAGGTGATGAGGAAAAGG 1696378 36 97.2 30 GAGGAAAAGG ...................A................ CAATAGGACCTATTATATTTACAACAACAG 1696444 36 97.2 30 ACAACAACAG ...................A................ ATTTTGAAAATATAGAGGCGATAAGCCTTT 1696510 36 97.2 30 ATAAGCCTTT ...................A................ TAAGAACTTTGTAGATGAAAGTGGTAATCT 1696576 36 97.2 30 GTGGTAATCT ...................C................ ATTCTAAAAGGTACAGAGAATGAAGCTAAA 1696642 36 94.4 30 TGAAGCTAAA ...................C........A....... TCAACCAATTTAATCTGCAACTCTGAAATG 1696708 36 97.2 CTCTGAAATG ...................C................ TGATAGGAAT ========== ====== ====== ====== ========== ==================================== 12 36 30 GTTGTGAATACCCTTCAAAGTGAGAGCAGTCCCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-5.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1725,263] Score: 0.18/0.18 # # Final direction: R [0.59,0.64 Confidence: LOW] >NC_014804 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1334169 30 100.0 37 ATCCCGCCCT .............................. AGCTGCAACCGGTTCAGCGTAAATGCTGATGAGGAGC 1334236 30 100.0 37 GATGAGGAGC .............................. CCGAACCCAACAGAAGCATTTGTTTTTTCATTAGAAC 1334303 30 100.0 36 TCATTAGAAC .............................. GCAAACGTCGTTGTTGCAGGACTAATCAGCCTCTAC 1334369 30 100.0 37 CAGCCTCTAC .............................. GCTTTTTCAGCTGTTCATTCTCTTGCTTCAGCTTTGC 1334436 30 100.0 43 TCAGCTTTGC .............................. AACAACATGAAGCCTGGTGAGCCGCCGAGATTCCTTGATGCAA 1334509 30 100.0 38 CTTGATGCAA .............................. TTCACAATGAAGTAGTATGCAACGTCCGTCTCCGCAAG 1334577 30 100.0 36 TCTCCGCAAG .............................. GCGTTTGAAACAAAATTTGCAGAATTGTTGACTGCA 1334643 30 100.0 37 GTTGACTGCA .............................. AGCTGTCTCTATTGCCTCCTCCTCAGTCCTTGCAATC 1334710 30 100.0 36 CCTTGCAATC .............................. TCCAGGTCGAGAAGCTCGAAGACGGCAAGATAGTCG 1334776 30 100.0 38 AAGATAGTCG .............................. CAGTATGATGGGGGGGTTTGGAAGTGCCCGTTTTGTAA 1334844 30 96.7 CGTTTTGTAA ...............C.............. ACAAACATAA ========== ====== ====== ====== ========== ============================== 11 30 37 GTTCCAATAAGACTCTAAGAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 90% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-0.60,-1.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [505,30] Score: 0.18/0.18 # # Final direction: F [5.59,0.37 Confidence: HIGH] >NC_014804 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1530305 30 100.0 38 NNNNNNNNNN A............................. AGAGGTAGTGGCTGATACGGTTAAGGCTACTTTGGAAG 1530373 30 100.0 52 NNNNNNNNNN .............................. TTGCAGTTTGTTAGGACGCACTTTTTAATAGATGTAGCTAAGTCTTTCAGAA 1530455 30 100.0 36 NNNNNNNNNN .............................. TGTCGTAAATGCTAAGATTATTCTCGATAAAGCCGC 1530521 30 100.0 40 NNNNNNNNNN .............................. ATCATTTGGGGAGCAACAATCATGCTCTTTGGCATAATCT 1530591 30 100.0 37 NNNNNNNNNN .............................. TTTGTATTAGTAGCGTCAGCACTTGCAGCGGTTAGGG 1530658 30 100.0 39 NNNNNNNNNN .............................. CATTCTGAAGAAGGCTGGATATGTTAAACAAGTGACTAC 1530727 30 100.0 36 NNNNNNNNNN .............................. TTCAAAGATATGCTTAGCTATTGCCGCATCTTTGAT 1530793 30 100.0 38 NNNNNNNNNN .............................. GCAGATTTGGATCGCTGGAGGGCCGTATTGGGTCGCAA 1530861 30 100.0 39 NNNNNNNNNN .............................. CTTGGTAACTGCTTTGAGTAACTGACTTTTCGCTAAGCC 1530930 30 100.0 39 NNNNNNNNNN .............................. CTCAAGAGCCACGACCATCACGCTCCTTCTTTATTTCTT 1530999 30 100.0 40 NNNNNNNNNN .............................. TTGACCCAGAAAGAGACCAAGAAGAAGAAGCGTTTTTTTA 1531069 30 100.0 38 NNNNNNNNNN .............................. ATAATCCTCTTAGGATGCAGCTTAATATCTGGGATATC 1531137 30 100.0 45 NNNNNNNNNN .............................. ACGCCGAATGCGCTCACAGTTGAGCCTTGGATACCGGCGGATGCA 1531212 30 100.0 44 NNNNNNNNNN .............................. TTTGCTCAGTGTAAAGTTGCCTTGCCAATTCAGCTTGATGATTG 1531286 30 100.0 37 NNNNNNNNNN .............................. CGATGTCCACCATTAAAGTGTGCTCGTAAGTCGTCAA 1531353 30 100.0 38 NNNNNNNNNN .............................. TTCCAAGCCGATCCTTTTCGTGGAAAAAAGAACTCGAA 1531421 30 100.0 39 NNNNNNNNNN .............................. AAGAAGAAATCGAGCGGTTGAAAGCGGAGCAATGGTCGT 1531490 30 100.0 37 NNNNNNNNNN .............................. GAGCAAGCTTGGATTGAGGTAATAGCTGCGTGCATCA 1531557 30 100.0 37 NNNNNNNNNN .............................. ACTCCGTTTGTAGTTACAAAGAAGAATTTGCCCTCAT 1531624 30 100.0 41 NNNNNNNNNN .............................. ATCCACATTGGTGTTCTCATTTTTGGAATAGTATTCACAAT 1531695 30 100.0 39 NNNNNNNNNN .............................. TGCTCGAAGTATTCAATACAACATTTGTCAATATAACAG 1531764 30 100.0 39 NNNNNNNNNN .............................. TTTTATGATGATTTTGAGACAGCATTAGACACGGCAAAA 1531833 30 100.0 38 NNNNNNNNNN .............................. TTACTATTCATCGTCGGCTCACTTGTGGGCAAAAAAGC 1531901 30 100.0 38 NNNNNNNNNN .............................. TCTGAGAATCATTGCAACCTCACCTCAATGCGAATTTT 1531969 30 100.0 41 NNNNNNNNNN .............................. TGGAACCTGATCGGTTCCATCATCATAAAGAGTCTTCTTTT 1532040 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 26 30 39 CTTTCAATTCTCTTAGAGTCTTATTGGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 90% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.10,-0.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [249,201] Score: 0/0.18 # # Final direction: R [0.37,5.41 Confidence: HIGH] >NC_014738 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================================== ====== 859688 47 91.5 30 AACAGTAATA -..A..................C...............A........ TATCTGCACAGGAGAAAATAGAGTCAATCA 859765 47 95.7 30 GAGTCAATCA ......................C...............A........ GTCCGTTGTCGGTTCATCTGATACTATATC 859842 47 95.7 30 ATACTATATC ......................C...............A........ TGGGATTTGACAAAACCTTACCTCAAAGAC 859919 47 95.7 30 CCTCAAAGAC ......................C...............A........ ATTTTACACGAAGATAAAGAGATGTATCTA 859996 47 100.0 30 GATGTATCTA ............................................... TAAATGTTTATTTATAGTTTGTTCGGTGTA 860073 47 100.0 30 GTTCGGTGTA ............................................... TCCCCCATCCGCTTTCAAGAGCTGCCTGTG 860150 47 100.0 30 GCTGCCTGTG ............................................... GCAATGAATAACTATATGGAAGCCTTGAAA 860227 47 100.0 30 AGCCTTGAAA ............................................... AACATTGCAATAAAACTAATAAACGAAGTA 860304 47 100.0 30 AAACGAAGTA ............................................... ATAGACGAGATTGAGATATGACAACACCTC 860381 47 100.0 30 ACAACACCTC ............................................... GATTTTCAGCTAATTAAATTATTTAATAAA 860458 47 100.0 30 ATTTAATAAA ............................................... GACAAAATAAAACAGATGTGCGATGGGATA 860535 47 100.0 30 CGATGGGATA ............................................... AACTACTTTCTAAAGCATTACAATTAAGAA 860612 47 100.0 CAATTAAGAA ............................................... CTCAAAAAAT ========== ====== ====== ====== ========== =============================================== 13 47 30 GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.09%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.10,-6.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [4,108] Score: 0.18/0.18 # # Final direction: R [0.37,5.09 Confidence: HIGH] >NC_014749 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 33042 28 100.0 37 NNNNNNNNNN ............................ GGTTTCTTCCACTTTCTTTACTTCTTCTTGTATTTCA 33107 28 100.0 38 NNNNNNNNNN ............................ GTTAAATATTCAACACGTATGTCTTCAATAATGTTCGC 33173 28 100.0 37 NNNNNNNNNN ............................ TCAGGGTACGTAAGGGCAGTTTTGGACGTGGGGTTGA 33238 28 100.0 38 NNNNNNNNNN ............................ TTATGTCACCGGTGATCATCCAACTATGGGAGAAGCAA 33304 28 100.0 36 NNNNNNNNNN ............................ GTCGAAGAAAATGGATTTTAGAGAGGTTGGCAGAGA 33368 28 100.0 1 NNNNNNNNNN .........................TT. NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 6 28 37 GTTTCATCTGAACCATGTGGGATTTAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.29%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [78.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [261,145] Score: 0/0.18 # # Final direction: F [0.68,0 Confidence: HIGH] >NC_014804 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 398320 30 100.0 40 ATCCCGCCCT .............................. TCATTAAGTATCTTATTGCCTCCTCAATCTCCTTTAAAGT 398390 30 100.0 37 CCTTTAAAGT .............................. AAGCACAATTCTTAGAGCAGCAGAATAATGAGTACAG 398457 30 100.0 41 ATGAGTACAG .............................. GCTCAAGCAGGCATTAGAAGCCATCGGGATGAAGGTTTTGT 398528 30 100.0 39 AAGGTTTTGT .............................. GCAGGCGAGAAATTCAAACTTTCGTGAGAAGCCTTTCGA 398597 30 100.0 38 AGCCTTTCGA .............................. CATAGCCTTTGCATAAGAAATTCTTCCAGTCCTAAAAT 398665 30 100.0 GTCCTAAAAT .............................. ATTCTTTGTTTGCAGCATCCCAAAACAGTTTGCGAT ========== ====== ====== ====== ========== ============================== 6 30 39 GTTCCAATAAGACTCCAAGAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 90% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-0.60,-1.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [526,148] Score: 0.18/0.18 # # Final direction: F [5.18,0.37 Confidence: HIGH] >NC_014752 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1672895 32 100.0 38 NNNNNNNNNN ...........T.......C.A.......... CCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGGCA 1672965 32 100.0 35 NNNNNNNNNN ................................ GTGCGCCGTTTTCGGTGCACTATACTTGATAAATA 1673032 32 100.0 34 NNNNNNNNNN ................................ TCTATTCAAGCCAAGGCTATTGCCACAAGGTATG 1673098 32 100.0 35 NNNNNNNNNN ................................ TTGCGGCCTGTCCGAATGTTGCTGCTCACTTTGCC 1673165 32 100.0 34 NNNNNNNNNN ................................ TAACACTGTTTGTAATGTTTTAAATTTGAAATAT 1673231 32 100.0 35 NNNNNNNNNN ................................ GTTTGATGTTTCAAACGCCGAAGATGTCAGATATT 1673298 32 100.0 35 NNNNNNNNNN ................................ TTCGGGAATGGGCGTTGTTTCTATCGTAAGTTCTG 1673365 32 100.0 34 NNNNNNNNNN ................................ GTAGGGATAACCGAAATACTCGTTATAGGCTATT 1673431 32 100.0 34 NNNNNNNNNN ................................ CGAACTGCCTGCTGGAATCAAGCACGGTTATAGT 1673497 32 100.0 34 NNNNNNNNNN ................................ TTCCCTCTCCTTCACCTAAAACTTTGTATGACTT 1673563 32 100.0 1 NNNNNNNNNN ................................ NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 11 32 34 GTTTCAACACACAGCCGCCTAGAGGCGGCTGA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-5.30,-5.50] Score: 0/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [223,192] Score: 0/0.18 # # Final direction: R [0.37,0.41 Confidence: LOW] >NC_014804 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 579477 30 93.3 40 GTGAAGTATA -.............A............... GAGTAATAGGGACTGTTGGAGGAGCAATTTCATCAATAAT 579547 30 100.0 37 CATCAATAAT .............................. GGCATTTCGGCTCGTTCCTCGCTTCTTCCGTACACGG 579614 30 100.0 38 CCGTACACGG .............................. TGCATGAATAAGAATATTCCAATCAGAATCAGTCCGAT 579682 30 100.0 37 TCAGTCCGAT .............................. TTGCAAGAATATCTCCAAGGTTCGCAACTCCGCTCAG 579749 30 100.0 38 CTCCGCTCAG .............................. GTTAGCTCGTAAATCGTGTTCTCAGGGATTGTGAATGT 579817 30 100.0 37 TTGTGAATGT .............................. CGGAGGATGGCCCAAGATGCACTAAAATAGAAAAATA 579884 30 100.0 37 TAGAAAAATA .............................. TTCCTAACACCAACACCCGTCCTAACCCTAACACCCT 579951 30 100.0 40 CTAACACCCT .............................. TGGAATCGGCTGCTGCTCAAGGAACTCAATCAAAGATTCA 580021 30 100.0 CAAAGATTCA .............................. AGGGCGGGATT ========== ====== ====== ====== ========== ============================== 9 30 38 CTTTCAATTCTCTTGGAGTCTTATTGGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 90% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.10,-0.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [103,199] Score: 0/0.18 # # Final direction: R [0.64,5.41 Confidence: HIGH] >NC_014753 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =========================== ====== 134931 27 100.0 34 NNNNNNNNNN T...G........T..........G.. GAAAAACTACTTCAAACGCTATTGCTTCGAATTT 134992 27 100.0 35 NNNNNNNNNN ..T........................ AGAGATGGGCGCGCTTGGTGCAGCTATGGCAAGCG 135054 27 100.0 35 NNNNNNNNNN ...............G........... GAGCTATTGGATCATCGACAGTGGTTTTACCTCCG 135116 27 100.0 34 NNNNNNNNNN ........................... AACACCAATAAAGCGCATAAGTCGGTCCTGTTCG 135177 27 100.0 35 NNNNNNNNNN ........................... GCTGCTGCAGATCGGCGTGAACGAAGTGCGCGGCG 135239 27 100.0 34 NNNNNNNNNN ........................... CTCGAGGCCGGCGAGTCCCTCAAACTTGAGGCCG 135300 27 100.0 1 NNNNNNNNNN ..........A................ NNNNNNNNNN ========== ====== ====== ====== ========== =========================== 7 27 34 ACCAACCCCCGCACGCGCGGGGAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.40,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [40.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [22,27] Score: 0/0.18 # # Final direction: F [0.64,0.41 Confidence: LOW] >NC_014758 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1652519 36 100.0 34 NNNNNNNNNN TC.TTGC.TG.GC...............A....... TTTATTATCTCATCCAGTGACTGAAGTAGCCTCC 1652589 36 100.0 37 NNNNNNNNNN ............................A....... TTACAGACATCAAGAGTTGAACTTAATAGCTCAGTTG 1652662 36 100.0 34 NNNNNNNNNN ............................A....... GAGGAAGCTATGAGGCTAAAAGAAGTTTTAAAAA 1652732 36 100.0 38 NNNNNNNNNN ............................A....... AGATACGTCGGGGTTAAATTAAACCAGGATGAGATCAA 1652806 36 100.0 38 NNNNNNNNNN .................................... AATAATAGTATAAACCAAAATAGTCTGACCGAGAATAG 1652880 36 100.0 36 NNNNNNNNNN .................................... AAAAGAAAATAGATGTGAGCATATATGCAGATCCAA 1652952 36 100.0 39 NNNNNNNNNN .................................... AGAGTAAGCCCAAAAGATTAGTTATGTTTAAAATAAAAA 1653027 36 100.0 41 NNNNNNNNNN .................................... AAAATGGAGTTAAAAAATATGATTGAAAAATATGTAGGAAA 1653104 36 100.0 41 NNNNNNNNNN .................................... GAAAATCTACACTAGCTAAGTTGACCTCTGAAGAACTTAAA 1653181 36 100.0 38 NNNNNNNNNN .................................... ACGGATATGTTTTTTTTATTAGAAAAAACGATGAGATA 1653255 36 100.0 38 NNNNNNNNNN .................................... ACGGATATGTTTTTTTTATTAGAAAAAACGATGAGATA 1653329 36 100.0 39 NNNNNNNNNN .................................... TGAGATGTATAGCTTGCAATGAAATCATTGACGATTTTT 1653404 36 100.0 36 NNNNNNNNNN ..........T......................... TTCATTACATTTTTGGAAAATAGACAGGGGTTTCAC 1653476 36 100.0 39 NNNNNNNNNN .................................... GAAAATTGTGGAGAAGTAGTAAGAGAGGGGGAGGATTAT 1653551 36 100.0 40 NNNNNNNNNN .................................... TAATCATAAATAAAAATTCTATAGTTGTTAACGCTAACAA 1653627 36 100.0 39 NNNNNNNNNN .................................... GATCCAGTTTACAAACCTTCATTTTATGCAAATAGATAA 1653702 36 100.0 37 NNNNNNNNNN .................................... GGATTATCTGTATTATTGTGAGTATTGTGGTGAGTAT 1653775 36 100.0 39 NNNNNNNNNN .................................... GGGCTATTAAAGCCCCATAAAAAAATAAAAAGGGGCTAT 1653850 36 100.0 37 NNNNNNNNNN .................................... TTAGATGTGTCTATATACGCTAAGCCTGATTTTGATT 1653923 36 100.0 37 NNNNNNNNNN .................................... TAACCCCTATAGCTCGGGAGTTCTTGCGAGAGCGATT 1653996 36 100.0 41 NNNNNNNNNN .................................... CATATTGTGGATGCGGTTTATGAAAATGATACCTTTCTCGT 1654073 36 100.0 40 NNNNNNNNNN .................................... AGAAAATTAGAGAAAGAAAAAATAAAAAAAGATATGATGG 1654149 36 100.0 39 NNNNNNNNNN .................................... GATGAAGTTTTAAAACTGTTAGAGGAAGGAATAATCCTC 1654224 36 100.0 39 NNNNNNNNNN .................................... TAAGAGGGCATCTGGCAGAGGAAATTGTCAAGAGATTAA 1654299 36 100.0 38 NNNNNNNNNN .................................... TACATACGATAAAGAAATTTTAAAAATAAAAGATAAAC 1654373 36 100.0 37 NNNNNNNNNN .................................... AAGAAAAAGACGCTTTGATAAAAAAAAATGAAAATAA 1654446 36 100.0 38 NNNNNNNNNN .................................... AAATAGCCCGTCGCATAGGGGTAGATAGGACAGCAATA 1654520 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 28 36 38 GTCGCAATCCCTTAAAGTCAGGTCAATGTTTCCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-2.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [687,379] Score: 0/0.18 # # Final direction: R [0,0.78 Confidence: HIGH] >NC_014758 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1990498 29 100.0 37 TGATATTTGG ............................. TGCTCTGTCGTACAAATTTAGGAGTGGCAGAGGATCG 1990564 29 100.0 37 CAGAGGATCG ............................. TTAAAGCTTGCGACAGAGATCTTAACAAGCTCTTTTT 1990630 29 100.0 36 AGCTCTTTTT ............................. CTAAAACTGTAGTTTTCCCCGTTCCTGCATACCCCT 1990695 29 100.0 36 GCATACCCCT ............................. ATATTTTTTGTGTAAAAAAAAATTGATGTCAAAAGC 1990760 29 100.0 36 TGTCAAAAGC ............................. CGAGCTACAAAAACTACAACAAAATCGCTACAAGAT 1990825 29 100.0 GCTACAAGAT ............................. GAGGTAAAAT ========== ====== ====== ====== ========== ============================= 6 29 36 GTTTCATCTGAACCATGTGGGATTTAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.07%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [311,436] Score: 0/0.18 # # Final direction: F [0.27,0 Confidence: MEDIUM] >NC_014758 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2109900 36 100.0 39 AAAGGGTGCT .................................... AAAGAACCTATTTTTTTATTCATTACTTTTGCACTTTTG 2109975 36 100.0 39 TGCACTTTTG .................................... ACAGAAAGTGTATTTATCAATACACTCCCCGCAAAAATC 2110050 36 100.0 37 CGCAAAAATC .................................... AGTAAACTAATTCCTCTTTGCTCGCCGTAAATGAAAG 2110123 36 100.0 39 TAAATGAAAG .................................... ATGCTTCAAACAGATTTGCTAAGAAACGAGCTTTTTTAT 2110198 36 100.0 40 GCTTTTTTAT .................................... TCCTTCGTGGAAGGATTAACTCCATTTTTCATTTTCGTAG 2110274 36 100.0 39 ATTTTCGTAG .................................... AAAATTCAATAGCCTCTTCGCTCCATTTATAAAAACCCC 2110349 36 100.0 39 TAAAAACCCC .................................... TCAATTCCTCTTTCTCTTCCTCACGCATTATCGTATTAC 2110424 36 100.0 34 ATCGTATTAC .................................... CAATTTTTTCTGGGGAGGCTTTAACCTTATGATT 2110494 36 100.0 38 CCTTATGATT .................................... AGAATTTATCCGTTCTTAATTCCCAGAGCTTTTGTATT 2110568 36 100.0 36 CTTTTGTATT .................................... GCCCGTGGGAGAGTACGAAGTCTTGGCTTTGGAAGG 2110640 36 100.0 34 CTTTGGAAGG .................................... GTGTGTTTTGTAATTTTCCCACAATTTCTTGTGG 2110710 36 100.0 41 TTTCTTGTGG .................................... CAATGGAGGGGGAGCCAGACTTTATCTCCCTCCACTTCGAA 2110787 36 100.0 39 CCACTTCGAA .................................... CCAGGGCTGCCCTTATATAACCCTCAGGGAGCTCCCGCT 2110862 36 100.0 39 AGCTCCCGCT .................................... TATTTTATTTTATTTTTATCTTCCTTCAAACTCCTCAAT 2110937 36 100.0 38 ACTCCTCAAT .................................... GCTTGCAAGCTTGTATTTTGCATAACATTTGCCATCTC 2111011 36 100.0 37 TTGCCATCTC .................................... CTTACAAAATTGTTGTTACTGAAACCAAGTTTTTTAG 2111084 36 100.0 AGTTTTTTAG .................................... CTATCTATCA ========== ====== ====== ====== ========== ==================================== 17 36 38 GTTGGAATCATTGACCTGACTTTAAGGGATTGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.30,-2.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1038,464] Score: 0.18/0.18 # # Final direction: R [0.18,0.37 Confidence: MEDIUM] >NC_014820 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 1499029 23 100.0 19 NNNNNNNNNN ....................... GAGGTCCCGCAGGTATCTG 1499071 23 100.0 25 NNNNNNNNNN ....................... GAGGCGGAGCCTCCGCAGGTCGCCG 1499119 23 100.0 34 NNNNNNNNNN ....................... GAGGCCCCGCAGGTTGTGGAGCCCGAGGTGGTAG 1499176 23 100.0 1 NNNNNNNNNN .AT.........CG......... NNNNNNNNNN ========== ====== ====== ====== ========== ======================= 4 23 26 AGCCTGAAGTGGTAGAGCCCGTG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [28.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [7760,124] Score: 0.18/0.18 # # Final direction: F [0.96,0.27 Confidence: MEDIUM] >NC_014820 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 171875 35 100.0 34 NNNNNNNNNN ................................... TTTTTTCGGTGGTTCAGGCTGTGCTGCAGGCTTG 171944 35 100.0 34 NNNNNNNNNN ................................... CTTTGTGGGCTCTGGTTTTGGCTCTGCGGGTTTC 172013 35 100.0 34 NNNNNNNNNN .................T................. TTTTTTCGGTGGTTCAGGCTGTGCTGTAGGCTTG 172082 35 100.0 34 NNNNNNNNNN ................................... CTTTGTGGGCTCTGGTTTTGGCTCTGCGGGTTTC 172151 35 100.0 1 NNNNNNNNNN ...........G.....T.....A........G.. NNNNNNNNNN ========== ====== ====== ====== ========== =================================== 5 35 34 GCCTCGCCCATTCCCTTGGGCAGTGTGCCTTTTGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,11] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-9.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [36.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [709,510] Score: 0/0.18 # # Final direction: F [1.05,0.37 Confidence: MEDIUM] >NC_014824 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 304527 32 100.0 37 NNNNNNNNNN ................................ CAGCCATATCCTTTATCAGCCGTCCGCCGCATTCGGG 304596 32 100.0 33 NNNNNNNNNN ................................ GTGTAAAAGCCGTCAACATAAAAACCACTACTA 304661 32 100.0 33 NNNNNNNNNN ................................ AACAGACGTACAGTTTCAAGGGCGATTGAGATA 304726 32 100.0 35 NNNNNNNNNN ................................ AAGTCATTTGCAACAGAGATTTTATTAAAGTGGAG 304793 32 100.0 1 NNNNNNNNNN ...................A.......A.A.A NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 5 32 34 GATGCAATCTGTACAGGCAGGTAAATTGCGAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.12%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.90,-0.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [553,329] Score: 0/0.18 # # Final direction: F [0.78,0 Confidence: HIGH] >NC_014820 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 243256 35 100.0 31 NNNNNNNNNN ......TC..........G................ GCATGCCCTTTTCCATGTGGCCCATTCTATC 243322 35 100.0 31 NNNNNNNNNN ............C...................... GCATGCCCTTTTCCATGTGGCCCATTCTATC 243388 35 100.0 31 NNNNNNNNNN ..................G................ GCATGCCCTTTTCCATGTGGCCCATTCTATC 243454 35 100.0 31 NNNNNNNNNN ................................... GCATGCCCTTTTCCATGTGGCCCATTCTATC 243520 35 100.0 19 NNNNNNNNNN ................................... GCATGCCCTTTTCCATGTA 243574 35 100.0 1 NNNNNNNNNN ................................... NNNNNNNNNN ========== ====== ====== ====== ========== =================================== 6 35 28 GCCCATCTTGTCTGTCATATTGCCGTACTTGTCAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.29%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [43.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [964,1571] Score: 0/0.18 # # Final direction: R [0,0.68 Confidence: HIGH] >NC_014828 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================= ====== 674783 33 100.0 34 NNNNNNNNNN G................................ TTTCCTCCTGGCAAAATTAAAACAGAATATATAT 674850 33 100.0 35 NNNNNNNNNN ................................. CGCCGTCAAGGGTGCTACGCGTCGCTTACAGCGAT 674918 33 100.0 34 NNNNNNNNNN ................................. CCCCGTCTGATGATGACCGGATGGCTACCGGTCG 674985 33 100.0 34 NNNNNNNNNN ................................. GGCCGATTCGATAGATTTAAGGCTATCCAGTTTA 675052 33 100.0 34 NNNNNNNNNN ................................. TTTCCTCCTGGCAAAATTAAAACAGAATATATAT 675119 33 100.0 35 NNNNNNNNNN ................................. TCCCAGCAGTTTGCCAGCATGGTATACGCTCCATA 675187 33 100.0 35 NNNNNNNNNN ................................. CAACAACACCCATGTGGGCGCGCAGATCACGCTGC 675255 33 100.0 34 NNNNNNNNNN ................................. CTTGTCGATGTTTACGTCGGGTTAAGTGTCTATC 675322 33 100.0 36 NNNNNNNNNN ................................. CCTGTACTATGATGGAGTTCGCATTCATTGGACAAC 675391 33 100.0 34 NNNNNNNNNN ................................. TGGCACGGGATATTTATGGTCGCATTCGAGGTAC 675458 33 100.0 34 NNNNNNNNNN ................................. GCGCGCGTGGGTCTGTCAAACTGCGTAAACAGAA 675525 33 100.0 34 NNNNNNNNNN ................................. TACGCATCAACTTACGAGATATCATGACAAGAGC 675592 33 100.0 35 NNNNNNNNNN ................................. CAGAAGCAGAGGCGAAGCCGCAATGGCCGCAACGG 675660 33 100.0 33 NNNNNNNNNN ................................. AAAGGCAATGTGGTGCTGCAGGTGCCGGAGGAC 675726 33 100.0 34 NNNNNNNNNN ................................. ATACAGGCTTGGATTTGGATAATGTCGCTTCCAT 675793 33 100.0 35 NNNNNNNNNN ................................. CCTCGGTAACCGCAGAGGTATCCGCACTGGTGGAT 675861 33 100.0 35 NNNNNNNNNN ................................. CGCAGCAGCGCCGCCGTGGCAACGTCCTGCTGGAC 675929 33 100.0 34 NNNNNNNNNN ................................. CGGATCGTGGCTGACATATGGTGATATCGAGAAC 675996 33 100.0 35 NNNNNNNNNN ................................. CCGTGGTGGTTAGCTACCAGATCGATGTCCCGTAC 676064 33 100.0 33 NNNNNNNNNN ................................. CTAAGCAGGGCGTTACATTCACCGCTGATCAGG 676130 33 100.0 34 NNNNNNNNNN ................................. TTGTCTGTGGGAATACGTTGCCTTTGATGTTGGT 676197 33 100.0 34 NNNNNNNNNN ................................. CTTTCCTTGACATTTCAACCAACCTTTCCTGCAA 676264 33 100.0 35 NNNNNNNNNN ................................. CACAACTACACCATATTGATGTATATTTCTGCAAA 676332 33 100.0 34 NNNNNNNNNN ................................. TCTGCCGAGCAGGTAGTCTGTTGATGTTTTGAAT 676399 33 100.0 34 NNNNNNNNNN ................................. CCACGTGATCGGATGGTTTTATCAGCTGTTTCCT 676466 33 100.0 35 NNNNNNNNNN ................................. GTATAGACCTTTGTGGCTCTGGTTGTCGCACAGTT 676534 33 100.0 34 NNNNNNNNNN ................................. CTGCCCTGGGCGAGATCAAAGAAAACTATGTGAC 676601 33 100.0 34 NNNNNNNNNN ................................. TGATACCCGCCAACATACGATTGGCATTACGTTA 676668 33 100.0 35 NNNNNNNNNN ................................. CATACTTTTACCACACTGGCGCTGGATGGCGGCGC 676736 33 100.0 34 NNNNNNNNNN ................................. GCAACTTCCTCCTGCGCTCCGTGAGACTATCTAT 676803 33 100.0 35 NNNNNNNNNN ................................. TACAACGGGTTCAGGCAGTGCAAACATTGAAAAAG 676871 33 100.0 35 NNNNNNNNNN ................................. CCTGCCACGATTGCCGGATATCGCCGTATCCAGAA 676939 33 100.0 36 NNNNNNNNNN ................................. CGATGGCAGAGAGGATCAACCTTGAGCATCTGGATA 677008 33 100.0 34 NNNNNNNNNN ................................. ACAAGCAGGTGGCGGGATATCTCAACGCCAAGAA 677075 33 100.0 35 NNNNNNNNNN ................................. AGATACTGCTTTATTCCATAGCTGTTGGTGGTAAC 677143 33 100.0 36 NNNNNNNNNN ................................. TTTCGCATGGCGGCAGTTGGGATGGAACAATCCGAT 677212 33 100.0 35 NNNNNNNNNN ................................. TTGACGATCATCTTGGTGACGCCGGTGACGTTCTG 677280 33 100.0 35 NNNNNNNNNN ................................. CTGCACTATGGTTTTCATATCCATACAATAAGATC 677348 33 100.0 34 NNNNNNNNNN ................................. TGCGCTTGGCATGTTGAGTATGCGCGCAGCACAA 677415 33 100.0 34 NNNNNNNNNN ................................. ATATACATTTTGGCGTAGTAACATGAATGATATT 677482 33 100.0 35 NNNNNNNNNN ................................. GGCGGCTGTTACTATTATCCGCAAACGGTACATTG 677550 33 100.0 34 NNNNNNNNNN ................................. CCAACACACAACAACGACGACAAAATAATCATAT 677617 33 100.0 35 NNNNNNNNNN ................................. TTCCCGCGTCGCCGAGGATGACACGCAGCATATCC 677685 33 100.0 35 NNNNNNNNNN ................................. GCGGCGATATCCCGGCGGATAACGTGATCGAGGTT 677753 33 100.0 34 NNNNNNNNNN ................................. ACCGATTGGGGTATTTTTTTGCTACTGTGTCACA 677820 33 100.0 36 NNNNNNNNNN ................................. GACGCGCGGCCGCAGCGGGGGTGGCAACGGTATGAA 677889 33 100.0 33 NNNNNNNNNN ................................. GTTTTTATATTTGAGGTTTTATGGGATGAAAAA 677955 33 100.0 34 NNNNNNNNNN ................................. CCGAGGGCCTGACCAGCAGGCCCACACCACACAC 678022 33 100.0 34 NNNNNNNNNN ................................. TCCGATCGCGCCGGGCATACTCCCGAGGATTAAA 678089 33 100.0 34 NNNNNNNNNN ................................. CTCAAAATTCGCAATCACATTCGTATGCGTTGGC 678156 33 100.0 34 NNNNNNNNNN ................................. AGTTGCATAGTATTGCAACACCATTTTAGTAGAC 678223 33 100.0 34 NNNNNNNNNN ................................. TTGGGCATCTGGTTATTTGGTTGTTCGTGCAGGA 678290 33 100.0 35 NNNNNNNNNN ................................. CTTCCCCCATCTGGCCGCTGTCGACCATGCATAAT 678358 33 100.0 35 NNNNNNNNNN ................................. GATATTTATGATGTGGATTTTGAGGTAAAACGGAT 678426 33 100.0 35 NNNNNNNNNN ................................. CATCACAACCATCATAATCAGGAATACTTTCACTG 678494 33 100.0 35 NNNNNNNNNN ................................. CCTTTTGTTTTGAACCACATATACATTATAACACA 678562 33 100.0 35 NNNNNNNNNN ................................. GCTTGTTGATGGTTTATGGATGGAATACGTTGATA 678630 33 100.0 34 NNNNNNNNNN ................................. TGATTTTGCCCAATCATTGTGATGTTTGACGCTA 678697 33 100.0 35 NNNNNNNNNN ................................. GCTCTTGATTGTCATGCTTATCATATATTTTTGAA 678765 33 100.0 33 NNNNNNNNNN ................................. GTGATAAGCAATCAGTGTAATAGTTACGTGTTG 678831 33 100.0 34 NNNNNNNNNN ................................. ATTCTGAAGTCCTTTAGCATGAAAGTTCCCAAAG 678898 33 100.0 34 NNNNNNNNNN ................................. ATCAAGGTTTCCGCCAATTACCGTTGAATTTGCC 678965 33 100.0 34 NNNNNNNNNN ................................. CATCCCGGCGCAAGGTACACAAGACATCCTGCGT 679032 33 100.0 34 NNNNNNNNNN ................................. TATCGGATCGCCTATTGACCTTGCCAGCGTACCC 679099 33 100.0 35 NNNNNNNNNN ................................. TTGTCTGCGGGGCGACGGACAGCGGGGTCAAAATC 679167 33 100.0 34 NNNNNNNNNN ................................. TTTTAATATCCGGAGTGATTTCTCCGGGCTTTGT 679234 33 100.0 34 NNNNNNNNNN ................................. CGGCATCAGCAGCGCTTTTTCCGACGGCTTAGGC 679301 33 100.0 35 NNNNNNNNNN ................................. CAGCCCTCACCAATGATGATGCAGTCCCCGGTTCC 679369 33 100.0 34 NNNNNNNNNN ................................. TCCACAGGGGCGCAGGGCTTAGGGCACCGGTGAA 679436 33 100.0 34 NNNNNNNNNN ................................. GTATTGGATTCCCCAAATCCTCTATAATTGAACT 679503 33 100.0 34 NNNNNNNNNN ................................. GCTGGACGCGTTGAAAGCCCGCATCGACCGTATA 679570 33 100.0 33 NNNNNNNNNN ................................. CTCACCTGCTCTACAGCACCGCAAAGGGTGACG 679636 33 100.0 35 NNNNNNNNNN ................................. CTTACCAGACAGGTGTTCAGACACGCGTCCTTGCG 679704 33 100.0 34 NNNNNNNNNN ................................. ATTGGACCGGATGGGTCTCTGGTAGCCTACCTCG 679771 33 100.0 35 NNNNNNNNNN ................................. GGGGTTTCTATGGAAGGGTTAATGTCCCAATATAA 679839 33 100.0 35 NNNNNNNNNN ................................. ACCAGCACACGGGACAGGCCGAGGGAGAAGCTCTC 679907 33 100.0 35 NNNNNNNNNN ................................. CGCAGACACAGGCCAATCACTTTTGGCAGACCATC 679975 33 100.0 34 NNNNNNNNNN ................................. GCATGCGTGGTGCCACGGGTATATCACCAACGAT 680042 33 100.0 34 NNNNNNNNNN ................................. ACAAAGTATGTAATAAATATAACCATGCATAACA 680109 33 100.0 33 NNNNNNNNNN ................................. CTTACTTTTTTACCATTTTGCATTATGTCAATA 680175 33 100.0 37 NNNNNNNNNN ................................. GAGTATCCTTCCATGATGTTGTGACTTAACTCGTGTT 680245 33 100.0 35 NNNNNNNNNN ................................. GTCACCTTCCAGCCCATCCTCAACGAGACCCCTAT 680313 33 100.0 34 NNNNNNNNNN ................................. ATTCTGCGATTACGATGTTATGTGCAGAGTTAGA 680380 33 100.0 35 NNNNNNNNNN ................................. AGTGGGTGCACGGCGAAATTGCACCCTGCATGGAA 680448 33 100.0 36 NNNNNNNNNN ................................. TGAGTTATCATTAACAGATATTAAGCACTATATGGA 680517 33 100.0 34 NNNNNNNNNN ................................. GCAATCCAGTCCGTTATTGCCGTATACGCTGATC 680584 33 100.0 35 NNNNNNNNNN ................................. TGATTGCATCTTTGGGCATGGGTGCATGTGCAATC 680652 33 100.0 35 NNNNNNNNNN ................................. CAGTTCCGTCAGTGAAATGACTGGGCATGCCTATG 680720 33 100.0 34 NNNNNNNNNN ................................. TCGCACCCAGCGTCAACAGGCAAAGGCACGGTTG 680787 33 100.0 34 NNNNNNNNNN ................................. GGACAAGTGACATAGATATTATAAGATATCAAGA 680854 33 100.0 34 NNNNNNNNNN ................................. TCCGCTACGGCGGCAATCAGGATAACAGCTATTT 680921 33 100.0 34 NNNNNNNNNN ................................. CAACGACAGACAGTTATCCTATGAACGACGTGAT 680988 33 100.0 34 NNNNNNNNNN ................................. TTATGACTGTTGATAATCTGAAACGTTATGCTAT 681055 33 100.0 34 NNNNNNNNNN ................................. TTAGCCCAGCGTGCCGCAATGCTATAAAGATAAT 681122 33 100.0 34 NNNNNNNNNN ................................. CGTCGGGCACCACGACGAACCGGTGAGCGGATGC 681189 33 100.0 34 NNNNNNNNNN ................................. TGTCAATCCAGAACATGCAATCAGGGCAACTTGT 681256 33 100.0 34 NNNNNNNNNN ................................. TGCTACATTGGCTAATATGTATTCTACTGAAATT 681323 33 100.0 32 NNNNNNNNNN ................................. CTTTCTGAAAATAATCCAGAGGATTGACCACC 681388 33 100.0 34 NNNNNNNNNN ................................. GCACAGGGCAAGGGCAAGTCTACTGTGCTGGCCA 681455 33 100.0 34 NNNNNNNNNN ................................. GATGGATGCTATTAATACACCAATGGATGTAATT 681522 33 100.0 34 NNNNNNNNNN ................................. TCATAATTTTGACTTCCTTTGCAATAATGTCATG 681589 33 100.0 36 NNNNNNNNNN ................................. TTGTTGCGATATACAAGAAAGACGCAGCATTTCAAA 681658 33 100.0 34 NNNNNNNNNN ................................. GCGATATCCCCGGAAAGCATCGCCGGGGGAATAT 681725 33 100.0 34 NNNNNNNNNN ................................. GGTTTCAGAATTTAAAACAGAGGGGATAGAATGT 681792 33 100.0 34 NNNNNNNNNN ................................. AATATCAGGCAATCATAACTTCACTTAAATATAA 681859 33 100.0 34 NNNNNNNNNN ................................. TCGGCGTTCGGATGGGTGCCACGGATGGATCGAA 681926 33 100.0 34 NNNNNNNNNN ................................. GTGAGGAGGTGTGAAAGCATGAGCAATCTTCCTC 681993 33 100.0 34 NNNNNNNNNN ................................. CACTCTGGATACTGTTGTTGATGATGTACACAAT 682060 33 100.0 34 NNNNNNNNNN ................................. CAACGGACACAGTGGGACATGCTACCAATATACC 682127 33 100.0 35 NNNNNNNNNN ................................. TCAGCGAGGTTGTTTTTGACGGGAATCCGGGCTTT 682195 33 100.0 34 NNNNNNNNNN ................................. CAGCCTTATCACTCCCGAGCACCGGTATAAGCCC 682262 33 100.0 34 NNNNNNNNNN ................................. TTCCTTTACCGCTACTCCCTGCCGCTTGGATGGA 682329 33 100.0 34 NNNNNNNNNN ................................. CTACACCAGTTATATCACCGAGTATGGCCTTGCC 682396 33 100.0 34 NNNNNNNNNN ................................. AGGGCCTCGCGGCTATCAGACAAGCTATCCAAAC 682463 33 100.0 34 NNNNNNNNNN ................................. AAGTATATAACTCCATCTCCGCCACTCCGGGTGT 682530 33 100.0 35 NNNNNNNNNN ................................. CGGACGCTGCCGGGGCGCATGGCGTGGACTATTGG 682598 33 100.0 34 NNNNNNNNNN ................................. CGTGCTGGTTCTTGTCGTCAAGCATATCATTTCC 682665 33 100.0 34 NNNNNNNNNN ................................. TCCACCATCTCGCCGCGCTGAGCGCGGTGTATTA 682732 33 100.0 35 NNNNNNNNNN ................................. CCTCAAACTACCGATTCGACAAACAGCGGGACAAA 682800 33 100.0 34 NNNNNNNNNN ................................. TCCAGCGAGGGATTACAGCTCGGCAGGTGTTCAA 682867 33 100.0 34 NNNNNNNNNN ................................. AAGGATACCGCGTTGTCGTTTACGCCGGGTATCA 682934 33 100.0 34 NNNNNNNNNN ................................. GCGACACGCGAAGTAATGACTGGTATACGGAAAT 683001 33 100.0 34 NNNNNNNNNN ................................. TCCAGCGAGGGATTACAGCTCGGCAGGTGTTCAA 683068 33 100.0 34 NNNNNNNNNN ................................. TCCCCCTCACGCAAGCATCGGCAGAATCGCTTTT 683135 33 100.0 35 NNNNNNNNNN ................................. CTCGCATTGTTTCTTGTAGTTCTTCAGCGCTGAGT 683203 33 100.0 34 NNNNNNNNNN ................................. TACAGGGCGACACTGTGTTGCAAATCTCGAATTA 683270 33 100.0 35 NNNNNNNNNN ................................. TGACAGCCTTTGACGCCACGCACGGCCTGACCGTC 683338 33 100.0 34 NNNNNNNNNN ................................. TCCAGCGAGGGATTACAGCTCGGCAGGTGTTCAA 683405 33 100.0 35 NNNNNNNNNN ................................. TATCGACAAGGGCAATCTGTGTCGCTTCCATCTCA 683473 33 100.0 34 NNNNNNNNNN ................................. TCCAGCGAGGGATTACAGCTCGGCAGGTGTTCAA 683540 33 100.0 34 NNNNNNNNNN ................................. CGGATTTTCTTGTTTTGGTAGTTGAAGATTTGAG 683607 33 100.0 35 NNNNNNNNNN ................................. TCGAGCGGCGTATGATCGGTGGGCAGCTGATCACC 683675 33 100.0 35 NNNNNNNNNN ................................. GTAATTTATGCGCGGAACTGCTATCGTGCACCGTA 683743 33 100.0 35 NNNNNNNNNN ................................. CTTAAAATCGCCTTGCTTTGAGTTAAATCCATCCA 683811 33 100.0 34 NNNNNNNNNN ................................. TGTGACCGATGGCCCCAAATGTGATACCGTTTTC 683878 33 100.0 35 NNNNNNNNNN ................................. GCCAGCACCAATGCGAGCAGCGCCGTAACAACTGC 683946 33 100.0 35 NNNNNNNNNN ................................. CCACACCGTTCACATGTATAATACTTCGATTCAAG 684014 33 100.0 34 NNNNNNNNNN ................................. GAACCCGCCATTTTCACAAGCAGAGCAATTTATT 684081 33 100.0 34 NNNNNNNNNN ................................. CGATGGCAACCACAACATCGTTGTGCCTTTTACT 684148 33 100.0 33 NNNNNNNNNN ................................. CCGGGAACACCTACACCGCGTCCTTGCAGAAGC 684214 33 100.0 34 NNNNNNNNNN ................................. ACGCAGGGCTGATTATGACCGTATCCACCGAGAT 684281 33 100.0 35 NNNNNNNNNN ................................. CTATCGGCGCATCGTATCTGGCAGTATTTTTGAAC 684349 33 100.0 34 NNNNNNNNNN ................................. GTCCGGCGGGACGTTCTACCAGTCTACCACAAAT 684416 33 100.0 35 NNNNNNNNNN ................................. TCCTCCTCGTATTCTCTTCGCGTTTCTTCACGGTA 684484 33 100.0 34 NNNNNNNNNN ................................. TTCCACGACAAACCTTTTTTGTCGCAATCAAAAT 684551 33 100.0 34 NNNNNNNNNN ................................. GATGCCGGCAACTCGGACAGCGCCACACGTACAC 684618 33 100.0 34 NNNNNNNNNN ................................. CAGCCCGCGTAAAAAAGGCATCCGAACCAGTGAC 684685 33 100.0 35 NNNNNNNNNN ................................. ACGACATGCGTGTAGCTGTTTTAGCCAAACCCATA 684753 33 100.0 34 NNNNNNNNNN ................................. ACACAAAAGATGCCCTGCAATACATCGTTGGGTT 684820 33 100.0 34 NNNNNNNNNN ................................. TGGCAAGTAACGTTCATTTTGCAGAGCCAAAGTC 684887 33 100.0 33 NNNNNNNNNN ................................. CGAAACTGGTCTGCCGACTTCGACTGGATGATC 684953 33 100.0 35 NNNNNNNNNN ................................. CGAAAATAACGTCATGCAGCATCAGACCACCGCCT 685021 33 100.0 34 NNNNNNNNNN ................................. CTGCATAGTCCTTGTTTCGACGTGCGCGCTTGGT 685088 33 100.0 33 NNNNNNNNNN ................................. CCATTGCAGCACTCATGTCCAGCGTTCGGAAAT 685154 33 100.0 34 NNNNNNNNNN ................................. CTCGGCCGAATCTGCAATCATCCAGCTCAAAAGC 685221 33 100.0 34 NNNNNNNNNN ................................. TAACCCAACGATGTATTCCAGCGCACTTCTTGTT 685288 33 100.0 34 NNNNNNNNNN ................................. GAGGATGTGTTCGATGGTGCGTCCACCGCTTTCT 685355 33 100.0 34 NNNNNNNNNN ................................. CGTTCCGTTTTTGTTTAACGCCAGCTGGAATGTT 685422 33 100.0 34 NNNNNNNNNN ................................. CACGATACAGTGTAAATGATATAATATAGACAGT 685489 33 100.0 34 NNNNNNNNNN ................................. TTTGATGATTGGGAAGACGACGAGTCAGAAGATT 685556 33 100.0 35 NNNNNNNNNN ................................. CATCCGCACCGACATAGATCATGGTCGGAATTGCA 685624 33 100.0 34 NNNNNNNNNN ................................. GACATCTTTTGTAGACTTATACCCAGTGATTGCA 685691 33 100.0 34 NNNNNNNNNN ................................. TTTCAACAACAGACGGTTTTACAATTATGTGAGT 685758 33 100.0 34 NNNNNNNNNN ................................. ATTTCGTGCCGGAAAGCTTCGGTAGTGTCATAAA 685825 33 100.0 34 NNNNNNNNNN ................................. AGATGTCGTGCTGCCCCGCCGCTTTTGGCGGCTC 685892 33 100.0 35 NNNNNNNNNN ................................. CAACGGATGCTTACCTGTGGGAATTGTGCGAAGAA 685960 33 100.0 34 NNNNNNNNNN ................................. ATATTGGGAATCACATGCTTGGTGGTTCGACGAT 686027 33 100.0 34 NNNNNNNNNN ................................. TCAAGCTGACGATCATAGTCCACGCCGATGATGT 686094 33 100.0 34 NNNNNNNNNN ................................. TGTCCCTCTCTGCTATACTATCCACAGGGGTGTC 686161 33 100.0 34 NNNNNNNNNN ................................. GTGCAGACAGTCCGTTGATTACAGACACGATGCC 686228 33 100.0 34 NNNNNNNNNN ................................. GCCATTGCAGCACTCATGTCCAGCGTTCGGAAAT 686295 33 100.0 34 NNNNNNNNNN ................................. CATTGCACTTGCTGCAGATGTTCCGGCTATTCTA 686362 33 100.0 34 NNNNNNNNNN ................................. AGAAGGGCAGATCGTCTTCTCCACTGATTTCTAC 686429 33 100.0 36 NNNNNNNNNN ................................. TAAGAACATAAATATATATATAGGGGGTTTTAAGGA 686498 33 100.0 34 NNNNNNNNNN ................................. TGACATCACCGGGGCAATCAAGCGCATGGCTGAT 686565 33 100.0 35 NNNNNNNNNN ................................. CATGTTCTGGCTGTGCTCAATAGATGCGCAATAAC 686633 33 100.0 34 NNNNNNNNNN ................................. CAATGGCCCACCAGATTGCAATGCCCACTGAAAG 686700 33 100.0 35 NNNNNNNNNN ................................. TCTTACCAGTCAATGCAGCTTCACCAGCAGTACCA 686768 33 100.0 34 NNNNNNNNNN ................................. GTGACCTCATCAACTGCAACGTGACCGTGCTGCA 686835 33 100.0 34 NNNNNNNNNN ................................. GCGTCGGAAATGTGATCGAATAGGGGAAATTCTC 686902 33 100.0 35 NNNNNNNNNN ................................. TGGCACTTTGGTTCAAGGCCAAGTTGGAACGACTC 686970 33 100.0 33 NNNNNNNNNN ................................. ACAAACCTTTTTAATCTTCCCCGCCGTGGCAAC 687036 33 100.0 34 NNNNNNNNNN ................................. CGGCTCTTGGATTTTTGCCATTTATAAAGTAATT 687103 33 100.0 34 NNNNNNNNNN ................................. GCCGCCCCATAGAGGGCGGCATTTTTATGCGAAA 687170 33 100.0 34 NNNNNNNNNN ................................. CCACACGTGCCGCAACACATGCTCCGAAAAATGC 687237 33 100.0 35 NNNNNNNNNN ................................. CTCACGCTGGATGGCATCACCGTAGACGCAAAAAT 687305 33 100.0 33 NNNNNNNNNN ................................. TGTTGCAATTGAAGCACTGGTGCTTGCACTGCC 687371 33 100.0 34 NNNNNNNNNN ................................. CCATAGCTTTCAGCTTTGGCGAACGGTCAAACAC 687438 33 100.0 34 NNNNNNNNNN ................................. GTGTTTACTCTGCGCATCTCAAGCACCCCTTTAT 687505 33 100.0 34 NNNNNNNNNN ................................. CATACCCGGTGCCCTCAGACACCTTGATGAAAGC 687572 33 100.0 34 NNNNNNNNNN ................................. GTGCAGACAGTCCGTTGATTACAGACACGATGCC 687639 33 100.0 35 NNNNNNNNNN ................................. CCAGCAAGACGATACATTCCGATTGCTCATATAAA 687707 33 100.0 34 NNNNNNNNNN ................................. GGCAGCGCCAGCACCAGCGCGTCAATGGCAACCG 687774 33 100.0 35 NNNNNNNNNN ................................. CGCCATCCGCCTGCCAGTCACGGATCATCTCCAAA 687842 33 100.0 34 NNNNNNNNNN ................................. GGAAATTCCAAGAGTGCGGCGGAGTTCGATTGGC 687909 33 100.0 34 NNNNNNNNNN ................................. ACAGACGCTCTTGTATCGCCTGCTCCATCTTATT 687976 33 100.0 35 NNNNNNNNNN ................................. ACCTGCTTGACCGGCTGGACGGTCTGCGCGTGCCC 688044 33 100.0 34 NNNNNNNNNN ................................. CTTGGATGACGAGGAGCTTGCCGAGGCGGTCGAA 688111 33 100.0 35 NNNNNNNNNN ................................. GCATCGTGCGTACCATTGCTTTCAGGCACATAGAA 688179 33 100.0 34 NNNNNNNNNN ................................. TTCAAAATGTGCCGCTACCCGTCATTATTTCATC 688246 33 100.0 35 NNNNNNNNNN ................................. CGGATGGCCGCGTACACCTGCTATACTCCACGGAT 688314 33 100.0 34 NNNNNNNNNN ................................. ACATCATCATTTGCCCTTTGCACCGCAGATGGGC 688381 33 100.0 34 NNNNNNNNNN ................................. GCGGTCAGTGTTTGTTTTGTACGTACCAGATGAA 688448 33 100.0 34 NNNNNNNNNN ................................. ATATGTTGCTGTCGTTGCTTGACGTATAGGTGTT 688515 33 100.0 34 NNNNNNNNNN ................................. TGAACAGCTTTCAAAGGCGACCGCGCCGATAATT 688582 33 100.0 34 NNNNNNNNNN ................................. AGCACCCGCCGTTATACGTTGACGGGTGCTTAAG 688649 33 100.0 34 NNNNNNNNNN ................................. CATTGAGCAGCACATTTACCCCGTCGTCATGCAA 688716 33 100.0 34 NNNNNNNNNN ................................. CTTTCAGTCCCTCGGCGTTCCACATTAAATTTCC 688783 33 100.0 34 NNNNNNNNNN ................................. TACGGGCTTATGCGAGATTGATGCATACGCGATT 688850 33 100.0 33 NNNNNNNNNN ................................. TGTGCTGGATGCCCAGCAAATTGCAGATGGTGT 688916 33 100.0 34 NNNNNNNNNN ................................. CCGGTATCAGCACCACTGTTGATCTTAACACAGC 688983 33 100.0 34 NNNNNNNNNN ................................. ATAATCTGTTCGCCATTTGCCTTACAAGTTTGAT 689050 33 100.0 34 NNNNNNNNNN ................................. CTGTTGAAGCGACCTATAAGGCACAGCTCGCAGT 689117 33 100.0 34 NNNNNNNNNN ................................. TGACCGACTGGAACGTGAAAAACCGATCGAAGGA 689184 33 100.0 34 NNNNNNNNNN ................................. GACAGACCACAATTGCCGCGACAATCACCGCAAC 689251 33 100.0 33 NNNNNNNNNN ................................. GCAACCAACGTAGCAGATATCGTATCCAGCATC 689317 33 100.0 34 NNNNNNNNNN ................................. CAGATTGTAATGCCCACTGAAAGAAATCCTTAAC 689384 33 100.0 35 NNNNNNNNNN ................................. TTTCCGTCCAGTGCAAGCGGATACCATCATAATAC 689452 33 100.0 34 NNNNNNNNNN ................................. TGTATGCGCGTTGTCATCGTCAAGTAATCAATCA 689519 33 100.0 34 NNNNNNNNNN ................................. TATCACCGCCTTATAAGATATTATTATATCATAC 689586 33 100.0 34 NNNNNNNNNN ................................. ATATTATATCATTGACACTGTATAATGTCAATAC 689653 33 100.0 35 NNNNNNNNNN ................................. TCACGGATAAGCATAGAATCAGATATGGAGGATTG 689721 33 100.0 34 NNNNNNNNNN ................................. CCAACATTCTTGACCCGAACACGGACGCGAAGAA 689788 33 100.0 34 NNNNNNNNNN ................................. CCAACATTCTTGACCCGAACACGGACGCGAAGAA 689855 33 100.0 35 NNNNNNNNNN ................................. CCCATCTGAACGCCGAAAGAAATTAATATCCTTGC 689923 33 100.0 35 NNNNNNNNNN ................................. ATCTTTCTGCTACATACATTCCTTCCGTGCAGAAA 689991 33 100.0 34 NNNNNNNNNN ................................. TACATGGGCCTTGGGTCTGTGTCTTTGATTAATA 690058 33 100.0 34 NNNNNNNNNN ................................. AACACATACGCCCGCCGGTGGTGTCGGTTATACA 690125 33 100.0 34 NNNNNNNNNN ................................. CCTTGAAAACCCGCGATGGGCGAATGTTTCTTAC 690192 33 100.0 35 NNNNNNNNNN ................................. TTTGGGTTATTTCCGGTTTATCAATCCATATGGCT 690260 33 100.0 34 NNNNNNNNNN ................................. GTCAGTGCCGCCGGTGCCGGCCCCCTTGTTCCAC 690327 33 100.0 34 NNNNNNNNNN ................................. CAAATCGTTTCCCGTTTGCCATAACGCCGTTCAT 690394 33 100.0 36 NNNNNNNNNN ................................. TCATCAAGTGACGGGGGCTTTCCTCCGCCGCCTCCC 690463 33 100.0 33 NNNNNNNNNN ................................. TATACACGGCAGAAAACCGTCCGCATATGTCGC 690529 33 100.0 34 NNNNNNNNNN ................................. TCAGTTGATTTCCGTTCTCGCGCCGAAGGAACTG 690596 33 100.0 35 NNNNNNNNNN ................................. TTTCTTAGCGGTTGCACTACAACCGCTATAATGCT 690664 33 100.0 35 NNNNNNNNNN ................................. TTAATTGCCATATCCATTCCCCCTCAAATATGCCT 690732 33 100.0 34 NNNNNNNNNN ................................. CATCAGCCAGCCGCTTCCGACGCTGGATCAAAGC 690799 33 100.0 34 NNNNNNNNNN ................................. TCCGCATATGGCGCGCAAAATTGTGGATGAAATC 690866 33 100.0 34 NNNNNNNNNN ................................. ATTAACAGTTTGTTCATAAATGTGGTTTGGAGGG 690933 33 100.0 34 NNNNNNNNNN ................................. TTGATGGAATTGTCGGACGGCGATGTGAGAAAAT 691000 33 100.0 35 NNNNNNNNNN ................................. TGGTACATCCGGCGCGGTTGGGCGAGCCATATATC 691068 33 100.0 34 NNNNNNNNNN ................................. CCTACGGGCGGATTTTTTATGCCTAAAAGGAGCT 691135 33 100.0 34 NNNNNNNNNN ................................. TTGATGGAATTGTCGGACGGCGATGTGAGAAAAT 691202 33 100.0 34 NNNNNNNNNN ................................. TTTTCCCGTATAGGCTGTATTGGATGCCCTATGG 691269 33 100.0 34 NNNNNNNNNN ................................. GGGCATTACATGTAAGCGAAATATGCCGCATTAT 691336 33 100.0 34 NNNNNNNNNN ................................. CGTGGGAAAAAATCATGACCGGCAGCTACAATGA 691403 33 100.0 35 NNNNNNNNNN ................................. TCCGGTTGAGCACGCCATCTCTACGATATCTTTGC 691471 33 100.0 34 NNNNNNNNNN ................................. TTTTTGCGGGCTTGAGACCGCCAGTGGCCGCATT 691538 33 100.0 34 NNNNNNNNNN ................................. GGTCACCCAGCGACGCGTCCACCGGCTCCCGGTC 691605 33 100.0 34 NNNNNNNNNN ................................. GGACATCTTTTGTAGACTTATACCCAGTGATTGC 691672 33 100.0 34 NNNNNNNNNN ................................. GTGATACCATTGATCGTTATAGTTGTCCGGGGAA 691739 33 100.0 34 NNNNNNNNNN ................................. AAATCCCAGCCGTAGAACTGGTATACGCAAAGAT 691806 33 100.0 34 NNNNNNNNNN ................................. ATAAGAGATTTGAAAAGCCCGTGGTTTCGTCCAT 691873 33 100.0 35 NNNNNNNNNN ................................. CAAACCATATTTTCCGCCGGACGCGTTTGCAAGGT 691941 33 100.0 34 NNNNNNNNNN ................................. TACCGCTTGATCGTGCGTTGTGATGTCTTCACGC 692008 33 100.0 34 NNNNNNNNNN ................................. TTGTATATAAACCCTTTTTGACTACCATAAATCG 692075 33 100.0 34 NNNNNNNNNN ................................. TGTGCTGCATCCAGCAATACAGGCCCTTATGCTT 692142 33 100.0 34 NNNNNNNNNN ................................. AATTTTACTTTCATACGTCATACGCCGCCTTGCA 692209 33 100.0 34 NNNNNNNNNN ................................. TCAACCGACGCGATACCTACGCCAACTGGCAGAA 692276 33 100.0 34 NNNNNNNNNN ................................. CATTGCCATATAATTATCCTCCTGTTTTTTCAGT 692343 33 100.0 34 NNNNNNNNNN ................................. CGCGCGGTAGTATAATATAGTTACAGGGTAAGCG 692410 33 100.0 35 NNNNNNNNNN ................................. GCGTCAGATAGGTGGTGGCAGGCATCACCTTGGTA 692478 33 100.0 35 NNNNNNNNNN ................................. GAAAAAGCCGGTACAACACTGCGCGGAGCTTTGAC 692546 33 100.0 34 NNNNNNNNNN ................................. TAAATCCGCACTGGATAACAAGCGGCTGGAAATC 692613 33 100.0 34 NNNNNNNNNN ................................. GCGTTACGCCCGGTTCCGATTTAAATGCCAGCGC 692680 33 100.0 34 NNNNNNNNNN ................................. TCAGCGGTTCCGGCGTTACGCCCGGTTCCGATTT 692747 33 100.0 34 NNNNNNNNNN ................................. CAGCAGGTCATTGTAGCTGCTCAGTACTTCCGCC 692814 33 100.0 34 NNNNNNNNNN ................................. CGTTGGTTGCTGTATCCATCCAGCATGCGCTCGC 692881 33 100.0 33 NNNNNNNNNN ................................. GGAAATCAGTTTGTCGCTTTGCTCTGCCATGTC 692947 33 100.0 35 NNNNNNNNNN ................................. CACCGCCATTACGGACGAGCTTTCCGGCAGCATCG 693015 33 100.0 35 NNNNNNNNNN ................................. TTCATTTGACATAATCGTGATGACGGCGGATGTGA 693083 33 100.0 34 NNNNNNNNNN ................................. CTCATGTAGCTCCATATTTCTTGATACACGCTAT 693150 33 100.0 35 NNNNNNNNNN ................................. CCTTGAAAACCCGCGATGGGCGAATGTTTCTTACA 693218 33 100.0 34 NNNNNNNNNN ................................. CCTTTTGGGCTAACGCATACGCCCTGTACACTAA 693285 33 100.0 35 NNNNNNNNNN ................................. CTGCCGAATTTGCTTGCAATGTTATTTGCAAGGAT 693353 33 100.0 34 NNNNNNNNNN ................................. CCCCAGCCGGTGTGTTTCCAGAGCTTGCGGCCAA 693420 33 100.0 34 NNNNNNNNNN ................................. CATCGACTTCATTCACGCTGTCCAGACGGCAAAT 693487 33 100.0 34 NNNNNNNNNN ................................. TCCACAAGCCGTCCAGAAGCCCGTACAGGAACCC 693554 33 100.0 1 NNNNNNNNNN ................................. NNNNNNNNNN ========== ====== ====== ====== ========== ================================= 280 33 34 ATTTCAATCCACGCTCTCCGTGTGGAGAGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [7,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-10.20,-6.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [557,175] Score: 0.18/0.18 # # Final direction: R [0.55,5.28 Confidence: HIGH] >NC_014831 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1143966 37 97.3 37 GGAAGCGGCA ........C............................ GACGGCCCACGCCGCTGGGCACGGCCCACGTGACGGT 1144040 37 100.0 34 ACGTGACGGT ..................................... GAGATGCAGCACGAGTGGGCCCCCCAGAGCCGGC 1144111 37 100.0 36 CAGAGCCGGC ..................................... CGTGTTGTGGACGACGACGGGCTTATCGCCCGCCAA 1144184 37 100.0 35 CGCCCGCCAA ..................................... ATGGCCGATCCAAAGTGGACGCCGGGGCCGTGGCG 1144256 37 100.0 38 GGCCGTGGCG ..................................... CCTCAGTCCGCCATGCCGTTGCGAGTGCCTGCAGGGTC 1144331 37 100.0 36 CTGCAGGGTC ..................................... CCACTTCGGCCGTGTGCCGGGCGTGGTGGGGTTCTT 1144404 37 100.0 36 TGGGGTTCTT ..................................... CCTCGCCCCGGGCGATGGCGTCCTCGATGATGCGCT 1144477 37 100.0 34 ATGATGCGCT ..................................... GCGCCAAGACGGGCGTGGACCGCAGCACCTATGC 1144548 37 100.0 34 GCACCTATGC ..................................... TCGGGCCCAGTTGGCCTCGGGCGAGGTGCCGCTG 1144619 37 100.0 34 GGTGCCGCTG ..................................... CGCCTTCCTGCGCCAATTGTTCCCGAGCCTGCCG 1144690 37 100.0 35 GAGCCTGCCG ..................................... CGGCTCGTCGCGCTCTGCGTTGTCGACGAGCAGGG 1144762 37 100.0 35 ACGAGCAGGG ..................................... GCGCAGGCTCTCGCTGAGATAGAGGACGCGGGGCA 1144834 37 100.0 36 ACGCGGGGCA ..................................... GACGGACCTCGACTGGCAGACCGGCGAGCTGCAGGT 1144907 37 100.0 38 AGCTGCAGGT ..................................... GACGCTGATTCGACGGCGGACGAAGGTCAAGATCCGAC 1144982 37 100.0 36 AAGATCCGAC ..................................... TCAGCGTGGCTCAACGTGACTCGTGGCGGCGGCCGA 1145055 37 100.0 38 CGGCGGCCGA ..................................... ACCATCGTCGAGCCGTGCCAATGGTGCGGCGGCACAGG 1145130 37 100.0 36 GCGGCACAGG ..................................... CAGCAGGCCCTCCACCTCGAACGGCGTGGCGGTCGC 1145203 37 100.0 TGGCGGTCGC ..................................... GGCCCGTCCA ========== ====== ====== ====== ========== ===================================== 18 37 35 GCTGCAACGTAGCCACGGTATTAACCGTGGATGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [9,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-11.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [25.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [625,196] Score: 0.18/0.18 # # Final direction: R [0.55,1.05 Confidence: LOW] >NC_014831 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2479885 30 100.0 37 CGAAGGTAGG .............................. CGACGCCCTGGTCGACGATTCGGGCATCGACTGGACA 2479952 30 100.0 36 CGACTGGACA .............................. TTCCAGTTCCCACCGCGAAGAGCGGCCCGCGCGAAC 2480018 30 100.0 36 CCGCGCGAAC .............................. ATGTTGTTCGCCGGGTCCTGGCCGGGCAGCGAGTAG 2480084 30 100.0 37 CAGCGAGTAG .............................. GACCCGGCAGGGAGCGGCACCTGAAAACCGGCAATTT 2480151 30 100.0 37 CCGGCAATTT .............................. GGGAGCCACCATGACGGCCGGGGCGGTCTGCCGGTCC 2480218 30 96.7 37 CTGCCGGTCC ........................T..... TATTTACGAATGGTCCAGCGGTATTTTTGGGCGATGG 2480285 30 100.0 36 TGGGCGATGG .............................. CAAGGAACCTGAAAGCCCTTCTAGTTCTCGTGCTAC 2480351 30 100.0 35 CTCGTGCTAC .............................. ACCGAGGCGGGTATCACGGACCAGGACCTGCTGCC 2480416 30 100.0 41 ACCTGCTGCC .............................. CTGATCGTCGGCCACCGGCTCTCCGAGCGTGAGGCGGCCAG 2480487 30 100.0 36 AGGCGGCCAG .............................. GCGCCCATTGCGTAGATCCGGCGGCCGAACAGGTAC 2480553 30 100.0 36 GAACAGGTAC .............................. ACCCCGGCACATGGCGCAACCTGCAGGACGTGGTGC 2480619 30 96.7 35 GACGTGGTGC .....................T........ AGGCGGCGCTTGGTCGCCCCGTCCGAGTCGACGAG 2480684 30 100.0 37 AGTCGACGAG .............................. ATCTTCTACGTGGAGGACGAGACCAGCGCGGCGCCGG 2480751 30 100.0 35 GCGGCGCCGG .............................. GTCACCGTCACGGTGGACGTGGGCCAGGCCACCGA 2480816 30 100.0 36 AGGCCACCGA .............................. TCAGCTGGACCGCCGGCGCTCATCCCCTCCGTCGCA 2480882 30 100.0 36 CTCCGTCGCA .............................. CTCCATCCCGGCCTGCGGCACGGCAATGCCAACTGG 2480948 30 100.0 35 TGCCAACTGG .............................. ATGTGGACGGCGTCCTAGCCGCTTCGGCTAGTAAC 2481013 30 96.7 36 GGCTAGTAAC .............T................ CCGCATTGTCATACGTCCATCGCAAGGCGCTGCGTC 2481079 30 96.7 GCGCTGCGTC .........................C.... GCGGTTCAGC ========== ====== ====== ====== ========== ============================== 19 30 36 GTTTGTAGAGTGCCTATGAGGAATCGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.90,-0.90] Score: 0/0.37 # Array degeneracy analysis suggestion: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [720,207] Score: 0.18/0.18 # # Final direction: F [0.59,0 Confidence: HIGH] >NC_014833 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================= ====== 1325369 33 100.0 34 ACATTCAGAT ................................. ATTTTGGCGAAAGTCAGACAACAAGGCGAGTAAA 1325436 33 100.0 36 GGCGAGTAAA ................................. CCTTGACAGATATCAACTCACGTTCGGTCTTGTTGC 1325505 33 100.0 33 GTCTTGTTGC ................................. TTGTATACCCTCGCAACGTGCGAGGGATACGGC 1325571 33 100.0 34 GGGATACGGC ................................. AGCATGGGGTTACGATATGTTAATTGCATTACTG 1325638 33 100.0 34 TGCATTACTG ................................. AAAAGGTTATAGCCCACAAAGATGAGATAATCGA 1325705 33 100.0 34 AGATAATCGA ................................. GAAGGATGATCCCGATTGCAAGTACTGCATTTGG 1325772 33 100.0 33 CTGCATTTGG ................................. CAATGGGACTGAACAAATGTATTTTTCTTGGGA 1325838 33 100.0 34 TTTCTTGGGA ................................. AGAGTCGCAGTTTGGCAACAAAGACCATAGTGGC 1325905 33 100.0 CCATAGTGGC ................................. AAGAGATCGG ========== ====== ====== ====== ========== ================================= 9 33 34 ATTTCAATCCACTCTCCCCGTGTGGGGAGAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [7,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-8.20,-8.40] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [227,186] Score: 0/0.18 # # Final direction: R [0.27,4.87 Confidence: HIGH] >NC_014833 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================= ====== 1313206 33 100.0 33 NNNNNNNNNN ................................. TCGTCACAAGGTAGCAAGACTGCGTGTTGAGAA 1313272 33 100.0 34 NNNNNNNNNN ................................. TAGCATAGCCTTATCATTACAATTAAGTTTGCTA 1313339 33 100.0 35 NNNNNNNNNN ................................. TGTCCTGCAAGTATCTGTGCGGTCTGTGCTGTCTG 1313407 33 100.0 34 NNNNNNNNNN ................................. TGTGAGTTGTTGAGCCAAGGGTAGAGGTAATCCA 1313474 33 100.0 34 NNNNNNNNNN ................................. TGCAGACCAACGTTCTCGCGCTGTGCCTGTGCCA 1313541 33 100.0 34 NNNNNNNNNN ................................. CGACCTCTCACATAGCTATCTATGGTATCGCATA 1313608 33 100.0 34 NNNNNNNNNN ................................. TCGATACACTGCTTGATAATCTTACCGTGTTATG 1313675 33 100.0 34 NNNNNNNNNN ................................. TGCAGACCAACGTTCTCGCGCTGTGCCTGTGCCA 1313742 33 100.0 33 NNNNNNNNNN ................................. TGCCATTCAAGGTCAAAGTATATCGGATATTCA 1313808 33 100.0 35 NNNNNNNNNN ................................. ATAGCGTGTGCCGTTCTGCTTTACCTTATCAACGG 1313876 33 100.0 34 NNNNNNNNNN ................................. GCAAGGGTGCGGATGATCTTCGTGGGTATCTGAT 1313943 33 100.0 36 NNNNNNNNNN ................................. GACTGCACAGCCCATAAGTATCTCGGGGCAGTGAAC 1314012 33 100.0 35 NNNNNNNNNN ................................. TGCGGCTTTGGTGCGCACCTAGAAAAAGGTGAAGG 1314080 33 100.0 35 NNNNNNNNNN ................................. AACGCTGTGATGATCTGCAGGATAACGCGGAAGTC 1314148 33 100.0 33 NNNNNNNNNN ................................. AGCGGTAGAATATCGCGGTTGATAGCCTCGATC 1314214 33 100.0 35 NNNNNNNNNN ................................. TATCGTCCAGAAAAACATAGCATAAGCCTGTGGCA 1314282 33 100.0 33 NNNNNNNNNN ................................. TCTCTGCCCTTAGGTTTGCAATAAACGTTTCCC 1314348 33 100.0 34 NNNNNNNNNN ................................. AAGATATCCCTGTATCTGATTTCCAAAGCTTACA 1314415 33 100.0 37 NNNNNNNNNN ................................. TATGCCCTCCCGCTTGGTGTGCTCTATCTTCCGCTTC 1314485 33 100.0 33 NNNNNNNNNN ................................. AGTTATATAATGCTTTGTGCCGTTCTTATCTTC 1314551 33 100.0 35 NNNNNNNNNN ................................. CATAGCGTAACAATTGCCGCTATCAAGCCCGCTAT 1314619 33 100.0 35 NNNNNNNNNN ................................. AACCTTAGAGAACACGCCACCTTCGCCGAGGATGA 1314687 33 100.0 33 NNNNNNNNNN ................................. GTTAACAACAAGCACCGTTTTATCGTACTCAGG 1314753 33 100.0 35 NNNNNNNNNN ................................. GTGATACAAATCAACCACTTCGGAGGCGGTTATCG 1314821 33 100.0 36 NNNNNNNNNN ................................. TGTGTCTGACAGGTTGCGAGCCTGTTGTCACAGCAG 1314890 33 100.0 34 NNNNNNNNNN ................................. TTGTACGGTACCACATACGCGAAACCAAGTGTCT 1314957 33 100.0 35 NNNNNNNNNN ................................. TTGAAGTGAACATTTTTGAATAAATCGCGTTTGTA 1315025 33 100.0 34 NNNNNNNNNN ................................. AATTTCGTAGTGCTATCAGCGCAATAACTGTAAC 1315092 33 100.0 36 NNNNNNNNNN ................................. TTGCATGAGTTTAAGAGGGAGCAAAAATAAATGACA 1315161 33 100.0 35 NNNNNNNNNN ................................. TCCGTAGAAAACATTGTAAAAATTTCGGGCGTGGC 1315229 33 100.0 35 NNNNNNNNNN ................................. CGCTTGCGCCTGTGCAAGTGCGTTTTGTGCCTTTT 1315297 33 100.0 34 NNNNNNNNNN ................................. AGCTAATGCTATATCGTAAGTTTGAGCCAACACT 1315364 33 100.0 35 NNNNNNNNNN ................................. ACAACGGTGTGTTTGTTTTTCCCCCGAATTTGATA 1315432 33 100.0 34 NNNNNNNNNN ................................. ACTAGCAATATGACAACGGAAGAAACCGTAAACC 1315499 33 100.0 34 NNNNNNNNNN ................................. TGTTTACATACGCATTATATCACATATTTGCCCG 1315566 33 100.0 34 NNNNNNNNNN ................................. TCTTAACGCGTCCATTTCTTCCGCTGTCGCGCCC 1315633 33 100.0 34 NNNNNNNNNN ................................. TATCGTGTACGATATTTTCCGTATCGGAAATCTT 1315700 33 100.0 33 NNNNNNNNNN .......T......................... ACTTAACGCGGCTTGATACTGTTCGGGTGTCAA 1315766 33 100.0 33 NNNNNNNNNN ................................. GACCGTCCAATTATTTTCTTTCATAGCCTTTTC 1315832 33 100.0 34 NNNNNNNNNN ................................. GATAACCCACAAACTTTTAATATATCTATAATTT 1315899 33 100.0 33 NNNNNNNNNN ................................. ACGTTCACACCCCCACAAATGAATTTTTGTAGT 1315965 33 100.0 35 NNNNNNNNNN ................................. TGTGTTCACGCCCGCTTTTTCCATTTGTGCAATTA 1316033 33 100.0 35 NNNNNNNNNN ................................. GTATGATTGCACATAAAACGTGTGGAAAAATTGTT 1316101 33 100.0 35 NNNNNNNNNN ................................. GTCCACGCGGTTGTGAATGTGGTTTTAAACCACGT 1316169 33 100.0 34 NNNNNNNNNN ................................. TCCGCCAACACTGCATAATGTTCTGGCGAAAGAA 1316236 33 100.0 34 NNNNNNNNNN ................................. TTTGCTTCTGCGCTGTTTTCGCCGTACTGTTCAG 1316303 33 100.0 34 NNNNNNNNNN ................................. ATAAACGGTCCAGACGTATCCTTAAAATGGCAGA 1316370 33 100.0 34 NNNNNNNNNN ................................. CATTGGGAATCATCTCCTTTGCAAAAATGGGTTA 1316437 33 100.0 33 NNNNNNNNNN ................................. TCTTCTGTTTTCATGCCATGTTTGTTGGATATT 1316503 33 100.0 34 NNNNNNNNNN ................................. TTTGCAGTTGAGTTCCAGTGCCTTGCGTACCCGG 1316570 33 100.0 35 NNNNNNNNNN ................................. TTAAAACATTTCGGGCAGAAAAAACTTAGAGTTGT 1316638 33 100.0 34 NNNNNNNNNN ..................G.............. TGCTATGCCCTCAAATGTTTTCGCACGATTTCTA 1316705 33 100.0 33 NNNNNNNNNN ................................. ATTGGATTTACCGTCAAGCATATCTGCTTTCGG 1316771 33 100.0 34 NNNNNNNNNN ................................. TCTGAACCGCCTCCGCCTGTGCCATCGCCATAAG 1316838 33 100.0 36 NNNNNNNNNN ................................. TTTATGAACTTAAACAATCCCCAAAAGTTGTCCGCA 1316907 33 100.0 33 NNNNNNNNNN ................................. GACCAGTCTGTACCGTTTGAACACAGGTCTATC 1316973 33 100.0 36 NNNNNNNNNN ................................. AATATGTATATTGCTCGCGCTTGATGAATCTACGCC 1317042 33 100.0 33 NNNNNNNNNN ................................. AGCAGTTACTACGCCGCCCGAAGTTACGGTTGC 1317108 33 100.0 33 NNNNNNNNNN ................................. ATCAACGGTTAGTGTCATAGTGCTGTTACCGTT 1317174 33 100.0 34 NNNNNNNNNN ................................. AATAATATATATCCTGGACTAACTGAGGTTCAGG 1317241 33 100.0 35 NNNNNNNNNN ................................. TCTCTAACCCAGCTCAGAAGTTCAAAAAGACAAAG 1317309 33 100.0 34 NNNNNNNNNN ................................. AAATCAGCTATGCCCGATGTGGTATTGTAGCCTG 1317376 33 100.0 33 NNNNNNNNNN ................................. ATTCGTCCGCCCCCTCGATGATTAGTGTGCAAC 1317442 33 100.0 1 NNNNNNNNNN ................................G NNNNNNNNNN ========== ====== ====== ====== ========== ================================= 64 33 34 GTCTCTCCCCACACGGGGAGAGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [8,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-8.40,-8.20] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [162,593] Score: 0.18/0.18 # # Final direction: F [5.55,0.18 Confidence: HIGH] >NC_014834 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 3320018 32 100.0 34 NNNNNNNNNN ................................ GTTTAAACTCGTTGAGGACGAACGTGCGGCAGCT 3320084 32 100.0 34 NNNNNNNNNN ................................ GGCACCGTCCCAAGTTGACGCCCCAACAGATGCT 3320150 32 100.0 34 NNNNNNNNNN ................................ CTTCCGCGAGGGGTCAGCCGACGCGTAAGTGAAG 3320216 32 100.0 34 NNNNNNNNNN ................................ CTCGTCGGCCTCACCGTCGTCCGGCCGAAAATCT 3320282 32 100.0 36 NNNNNNNNNN ................................ TTGCTACCTACGGCGTGCGTCGGCCTCGTACTGAGC 3320350 32 100.0 36 NNNNNNNNNN ................................ ATGCGTCAACACAGCCTCACGGAGATGAGTTATGAA 3320418 32 100.0 35 NNNNNNNNNN ................................ TCGTGGCCGGGTGCGCCGCTACTCTGCGCGGTCCG 3320485 32 100.0 33 NNNNNNNNNN ................................ ATGCGTCAACACAATCTCACGGAGATGAGTTAT 3320550 32 100.0 33 NNNNNNNNNN ................................ CGGCACAGGCCGAAACTGACGCCTCAGCAGATG 3320615 32 100.0 33 NNNNNNNNNN ................................ CCCGCGCATCCGGAAACGGCTAGAACCCCCCGC 3320680 32 100.0 33 NNNNNNNNNN ................................ CACGAGTACTCAGTATAGCTACTCGTGGGCTGA 3320745 32 100.0 35 NNNNNNNNNN ................................ ATCGAAAACGTGGTGGCGTAGTCCGGGGGGCGATC 3320812 32 100.0 35 NNNNNNNNNN ................................ ACTTACGCCTCGGCTGACCCGGCGCGTAAGGAAGT 3320879 32 100.0 34 NNNNNNNNNN ................................ ACCGTGAGGTGATCGGCAAGCCGTCCGAACGGTA 3320945 32 100.0 34 NNNNNNNNNN ................................ AGCGTCGCGAAGCCGGCGCCGTGTGCGAGCCGCG 3321011 32 100.0 34 NNNNNNNNNN ................................ AGCAATCGAACGACCCGCTGCCGCCCGATCGTCG 3321077 32 100.0 36 NNNNNNNNNN ................................ TTCGTCGGCGATCTGACCCGCGACCTCTGCCACGTC 3321145 32 100.0 34 NNNNNNNNNN ................................ TTGGCCATCTGCGGTTACTCCGTGGTCTGGACGC 3321211 32 100.0 35 NNNNNNNNNN ................................ GTCGGACATCTGCGCGCGCTCGCGCAGCTCCGCCT 3321278 32 100.0 34 NNNNNNNNNN ................................ AACTGGAAGATCTACGACAGCAACCCGGCGGCCT 3321344 32 100.0 35 NNNNNNNNNN ................................ CAGCACGCCCTGGCTGAGTGCATGGGCGATCTCCT 3321411 32 100.0 35 NNNNNNNNNN ................................ GACATCGAGATCGAGGCCGCGGTCTACGTCGTCAC 3321478 32 100.0 33 NNNNNNNNNN ................................ ATGCCTGCGGTTTGCTGTCCGCATCCTGCTTGA 3321543 32 100.0 34 NNNNNNNNNN ................................ GCGCCGGAGCGTCGACAACTCAAGGCGACGTGTC 3321609 32 100.0 33 NNNNNNNNNN ................................ CTGCGCGGCCTGGAGGCGGCGGCAGAATTTGTC 3321674 32 100.0 34 NNNNNNNNNN ................................ CTGCTGCAATCGTTCGGGCTGAAGGACTGGAGCG 3321740 32 100.0 35 NNNNNNNNNN ................................ ATATAGTCGTCGAGTGCGCCATTGAATTCAATCAT 3321807 32 100.0 33 NNNNNNNNNN ................................ CTCCGCGCGGTCAACGGCGTCGACACCCCGCTG 3321872 32 100.0 34 NNNNNNNNNN ................................ ACGGCGACGCAGACGCTGACGCCGGAGCAGCAGG 3321938 32 100.0 35 NNNNNNNNNN ................................ ATCGGCGACGCCAACGCGGCCAGTTCGGCGGAACG 3322005 32 100.0 35 NNNNNNNNNN ................................ ACGCTGCTGATAGAGCTGCTGCAGCGCCTTGACGG 3322072 32 100.0 34 NNNNNNNNNN ................................ ACTGAGGGGCAGCCCGGCTTCGCTGGCTCGGATG 3322138 32 100.0 34 NNNNNNNNNN ................................ AACGATCCCGGCCAGCCAGCCAAGCAGGTGTCCG 3322204 32 100.0 35 NNNNNNNNNN ................................ CTCGGAATAGACCGCGGCGTCGGCGACATCGCGGA 3322271 32 100.0 33 NNNNNNNNNN ................................ ATCGCCTCCAGCGCCTCGGCGACGCCCATCAGC 3322336 32 100.0 35 NNNNNNNNNN ................................ ATCCCGGTCAGCAACGAACTCTCGCGCGGCATGGC 3322403 32 100.0 34 NNNNNNNNNN ................................ ATCGCCGACGATCCCGAGGTGCATTGCCTGCCCT 3322469 32 100.0 35 NNNNNNNNNN ................................ TTCAATTGCGGCACCAACATCGTCAACGGCTCGGC 3322536 32 100.0 34 NNNNNNNNNN ................................ AGGATCTCGTCCGCCTTGCCGATCCGGTACTCGG 3322602 32 100.0 33 NNNNNNNNNN ................................ CGCTTTGCGCCGTTCGCCGAGCGCGTGGCGATG 3322667 32 100.0 34 NNNNNNNNNN ................................ TATCTCTGCTTTCGCAGAAAGGCGCGCGGCTACG 3322733 32 100.0 33 NNNNNNNNNN ................................ AACGCCAGGGCGCAAGACGCGCTGCAAGAAGCC 3322798 32 100.0 35 NNNNNNNNNN ................................ TTCGGCGCTGGGCCTGCTGGCAGATCGCTCGTGCC 3322865 32 100.0 34 NNNNNNNNNN ................................ ACGTGTCCGGGCGGCGCGTCGTTCCGCTACGCGC 3322931 32 100.0 34 NNNNNNNNNN ................................ AGCGCGCCGACCGTCAGCTCAGTGACGCCGAAAG 3322997 32 100.0 35 NNNNNNNNNN ................................ CTTGGACGGCGACTTGCTGGTCAGCGTGATGCCGA 3323064 32 100.0 36 NNNNNNNNNN ................................ AACACCATGCCGCCGCCCTCGCCGACGTCACGGATG 3323132 32 100.0 34 NNNNNNNNNN ................................ CAATACGAAACTTTGCTTTTCGGGCAGCCGTACC 3323198 32 100.0 33 NNNNNNNNNN ................................ ACGCTCAGCCCGACTGACCATGCCCCGCACCCC 3323263 32 100.0 34 NNNNNNNNNN ................................ ACCGTCAAGGTGCCGCAGCCCGGCGCGGCACCCG 3323329 32 100.0 1 NNNNNNNNNN .....................C.CCCGCCGG. NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 51 32 34 GTCGCTCCCCGCGCGGGAGCGTGGATCGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-10.70,-7.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [41.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [184,363] Score: 0/0.18 # # Final direction: F [1.15,0.27 Confidence: MEDIUM] >NC_014836 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1123444 36 100.0 37 NNNNNNNNNN .................................... ACTTTTCTCCATATTTTGCCGAACTTTGCCTTTAAGC 1123517 36 100.0 33 NNNNNNNNNN .................................... GCGTGAGCCTGTTATGCTGGGCTCTGCTTTGTT 1123586 36 100.0 35 NNNNNNNNNN .................................... ACATACTATGGAGTTTGAGAACTTCTTTTATTTCT 1123657 36 100.0 38 NNNNNNNNNN .................................... GGCTACCCAGTCATAGTCATTAGTTGCCAACATTCTAG 1123731 36 100.0 40 NNNNNNNNNN .................................... TTGGCCATAACCGTCACTTCTGAGAACATTTTCAGCCGTC 1123807 36 100.0 35 NNNNNNNNNN .................................... TAAAATTTTTTGTGTATATCCCTGCACTGTTTTTT 1123878 36 100.0 35 NNNNNNNNNN .................................... GAATTTAAGGAAGTGACATATACGTCATCTTCCGG 1123949 36 100.0 34 NNNNNNNNNN .................................... GACATAAACCACCTCTCAAAAATTATTTACCTGG 1124019 36 100.0 36 NNNNNNNNNN .................................... CGCGACGGTTGTCGCGTTGCTGTGCTGGAGGGGCAC 1124091 36 100.0 33 NNNNNNNNNN .................................... GAGAATGTCACTTTCTAGTGAATTTAAGGAAGT 1124160 36 100.0 36 NNNNNNNNNN .................................... GACTTCGCAATTCCTCCTTTTGGCGAAAGGACTTGT 1124232 36 100.0 37 NNNNNNNNNN .................................... ACGACGGCAGTGCCGTCAGTAAGTATAACTTCTATAC 1124305 36 100.0 38 NNNNNNNNNN .................................... TCACAAACTCCACCGTTGTTAATAGCGTTTACTAACTC 1124379 36 100.0 37 NNNNNNNNNN .................................... ATCCTGCACTATTACCCAGCGACGACCTTGGATACGT 1124452 36 100.0 40 NNNNNNNNNN .................................... TCTGCTCACAAGTTGAGCAGGCGTTCCTGCAGTACTGTGT 1124528 36 100.0 35 NNNNNNNNNN .................................... TCTTACAGTCAAACTCCTTGAACATATGCTTTAAC 1124599 36 100.0 34 NNNNNNNNNN .................................... CCCTTCCCTTTCAAGAAGAATGGGGCCTTCCGAC 1124669 36 100.0 37 NNNNNNNNNN .................................... GCAAATTGGCGTCTTGCAAATAGGCATCTTGTAAATT 1124742 36 100.0 41 NNNNNNNNNN .................................... AGAGATCAAAACCTCCGGATGTTGTTTCGGAAAGTTCTCGC 1124819 36 100.0 36 NNNNNNNNNN .................................... GGCTTCGCAGTTCCTCCTGGCTCCTGAAGAACTTGT 1124891 36 100.0 33 NNNNNNNNNN .................................... CAGTTTAGGGAGCTTTATAACCGGGCTGTGCGC 1124960 36 100.0 34 NNNNNNNNNN .................................... TCATAGTCCTCACCCGGCTGAGGTTCGCCACCGA 1125030 36 100.0 37 NNNNNNNNNN .................................... ATTCCCTGCGGCAGCCCGAAAAACCAGAACCTCCTCA 1125103 36 100.0 34 NNNNNNNNNN .................................... GTTCAACATAAGATTCTTGATAAGACGTTGTTTG 1125173 36 100.0 33 NNNNNNNNNN .................................... GCTTCCTCAGCTCTGCTATGATTGATTCTCGCT 1125242 36 100.0 36 NNNNNNNNNN .................................... GGTTGACGGATTTACCATCAACCATGACACATATAG 1125314 36 100.0 36 NNNNNNNNNN .................................... GCCCTCGTCAGAATCGGAATTCGGCTAGTCGCCTTC 1125386 36 100.0 36 NNNNNNNNNN .................................... AGCGGTGTAACCCAACTCAATGAAATGATTACGGAT 1125458 36 100.0 33 NNNNNNNNNN .................................... GCTGCGCGCCTGTTCCAGTCATGCATCACTCCC 1125527 36 100.0 35 NNNNNNNNNN .................................... TTTGTTAACGACGCCATGGTCGCCAATAACTTCTA 1125598 36 100.0 36 NNNNNNNNNN .................................... ATGAACAGGGTAACTGTATAGGCCACTAACCACGGT 1125670 36 100.0 35 NNNNNNNNNN .................................... GTCAAGTATAAATCGTTTCATGCTACACCCCTTTA 1125741 36 100.0 36 NNNNNNNNNN .................................... CAACTTCAGCGCAACTGCGCTGATATCGGCCTGGTT 1125813 36 100.0 40 NNNNNNNNNN .................................... AAGCCACTAGCCACGGTGCCATATCACACGCTCCCATTGC 1125889 36 100.0 36 NNNNNNNNNN .................................... GTAGGCCAGTAGGCCATTTTTAAAGGGCTGTCCTCA 1125961 36 100.0 38 NNNNNNNNNN .................................... CTGCCAGTTTTTTCGTCGACCTCCTTAGTTTTGGTATC 1126035 36 100.0 36 NNNNNNNNNN .................................... ATACCGGACGACATAAACATCTGATATATAGTCTGG 1126107 36 100.0 33 NNNNNNNNNN .................................... AACATAAATCACCTCTTGAATATATTTAACTGG 1126176 36 100.0 35 NNNNNNNNNN .................................... TGGGGTTGCCATCTCCGAAGGCCAGCTTCAACGCA 1126247 36 100.0 34 NNNNNNNNNN .................................... TCGGAGCCGTGCCCATATGCTCCGAGCCAGCGCA 1126317 36 100.0 39 NNNNNNNNNN .................................... GATATGTAGTCTTGAAACTTGTCTCTAAACATCATGCAC 1126392 36 100.0 36 NNNNNNNNNN .................................... GTACCAGCAGCGTGTGATGGTGATCGTGTCGCTGCC 1126464 36 100.0 38 NNNNNNNNNN .................................... CTGCCGTTGTTAAATCCACAGTAAACAGCGTTGAATGT 1126538 36 100.0 34 NNNNNNNNNN .................................... GCCTCAAAGATTGCGTGTGGGGTCAGGTTGATAA 1126608 36 100.0 34 NNNNNNNNNN .........................A.......... CAAAACGACTTTACCTCTCCACTAATTCCATAAA 1126678 36 100.0 34 NNNNNNNNNN .................................... CCTTCCAGTATATCCTGGGGACGAGTGCTGTAGT 1126748 36 100.0 35 NNNNNNNNNN .................................... ATCTGCTGTCTCCGTACCATCTTTTGGAGAGCCAC 1126819 36 100.0 37 NNNNNNNNNN .................................... ACGCGACGGTTGCCACGTTACTTTTTTGAATGGGTAC 1126892 36 100.0 35 NNNNNNNNNN .................................... TCAGGGTCAATAGTCGGCACGTTCATTTCAGTTAC 1126963 36 100.0 37 NNNNNNNNNN .................................... AGACTTGTTGATGCCCTTAATACCCTTAATCTCTTTC 1127036 36 100.0 38 NNNNNNNNNN .................................... CCCGAAGGCGATCTTCAGGGCAACCGCCTTGAGGCCGG 1127110 36 100.0 35 NNNNNNNNNN .................................... GCCTTTCCAAGTTCTATTGAAACGTGGCGTTTAGT 1127181 36 100.0 37 NNNNNNNNNN .................................... AAAGCCGTTGATGATAGCAGGATAATTCGCCATTGAC 1127254 36 100.0 34 NNNNNNNNNN .................................... ATGCTCAAGATATTCTTCGCACGAAACATATTCC 1127324 36 100.0 1 NNNNNNNNNN .............CT......AG........A.A.G NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 55 36 35 GACCGAAGACCTGTCGGAAACGACGGGGATTGAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [11,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-12.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [48.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [437,83] Score: 0.18/0.18 # # Final direction: F [1.33,0.27 Confidence: HIGH] >NC_014915 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 339380 30 100.0 37 TGGTTTGGGG .............................. CTATGAACAGTATGGAACTAAATATGTGACATGGGGA 339447 30 100.0 36 GACATGGGGA .............................. TACTACACATGTAGTACATTGTCAACATTCTTTTGA 339513 30 100.0 35 ATTCTTTTGA .............................. GCCGCAAGCCATACGCGCCAGTACATCGACTTCGC 339578 30 100.0 36 TCGACTTCGC .............................. CTCCCCTTATTGCCAGTCCGAATCAGTCGGACTGGC 339644 30 100.0 37 TCGGACTGGC .............................. TTCCACCTCTAACAGCTCGGCCGGGATGATCCAAGGC 339711 30 100.0 37 GATCCAAGGC .............................. AAAAATTTGCAAATCGTCCTGTAGAACATGTATTTAC 339778 30 100.0 37 ATGTATTTAC .............................. TGCGCTAATCCTTTCGAAACGGTACCGGAGCAAATTC 339845 30 100.0 36 GAGCAAATTC .............................. GGACAACTGTTCCTTTCTCTACTCTTTCTCTCCATC 339911 30 100.0 36 TCTCTCCATC .............................. CTCTTAAAGAGTGGCGTGATGTTGACGTCCGCGTAC 339977 30 100.0 35 GTCCGCGTAC .............................. ATGGAACGATCACGGTACATAATGATGATCGTCGC 340042 30 100.0 36 TGATCGTCGC .............................. CTTGGTATAACAATGTCATGTCGTCTGTTGGTGTTT 340108 30 100.0 36 GTTGGTGTTT .............................. TTGCACCCACTATTGACCGCCTCCAAGTAGTTTTCT 340174 30 100.0 35 GTAGTTTTCT .............................. GTAGTAACAAGCTGTCTAAACTTGTCAGCATAATC 340239 30 100.0 35 CAGCATAATC .............................. ACTAGCGTTCGGCAAGCTATCGAGATACCGTTTAA 340304 30 100.0 37 TACCGTTTAA .............................. TCTACGCAATATAGCGCGTCCATAGCCTTTTCGATAG 340371 30 100.0 36 TTTTCGATAG .............................. TATGACAAAATGGGTTAATATGGTGACAAAAGGAAA 340437 30 100.0 37 CAAAAGGAAA .............................. CAGGGTTGAAATAATCTGTCATTGAATCGCTTTGGTC 340504 30 100.0 38 CGCTTTGGTC .............................. CCCGACCCGTTTTTTATCATCGCTTCATGGAAACAGAG 340572 30 100.0 37 GGAAACAGAG .............................. ATATATTAAAAGGCTAAAAATGGGCGCTCTGGGGCGC 340639 30 100.0 38 TCTGGGGCGC .............................. TTTTTGAAGGTCGCGAATGTTTCTCGGAGGGGCATAAC 340707 30 100.0 37 GGGGCATAAC .............................. TTTTTCTGCTCGATGTAAATATCCAAAAGCGGCGTTC 340774 30 100.0 35 AGCGGCGTTC .............................. CAAGAGGCGATCGAGGACAAGGCTGAGAATATCGG 340839 30 100.0 35 AGAATATCGG .............................. TCCAATCGCCCGCGTCGTTCCAATAGCCGCCGCTC 340904 30 100.0 GCCGCCGCTC .............................. TCTGACCGCTGCTCCACTGATCGGTTTAATTGAGCCA ========== ====== ====== ====== ========== ============================== 24 30 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.80,-0.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [200,248] Score: 0/0.18 # # Final direction: F [5.37,0 Confidence: HIGH] >NC_014915 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 349707 30 100.0 35 GCATTTTTGG .............................. ATTTTTTGTTTCGGTTTCCCCTCGCGCTCCCCTTC 349772 30 100.0 35 GCTCCCCTTC .............................. CGAACCATCCGCTCGAAGGTTGATCGGCTAATGCC 349837 30 100.0 36 GGCTAATGCC .............................. TCAGGATAGAGAATGGTCACCTGCACAGGCTGGGTC 349903 30 100.0 37 AGGCTGGGTC .............................. CCAATCTATTTCCAACGGTGGAATAGCATCGGTATTC 349970 30 100.0 39 ATCGGTATTC .............................. ATGGGTATTGTCCCAATAAGTCGCCGAAACATAGTTCCC 350039 30 100.0 36 CATAGTTCCC .............................. GCTTCACGATGATCCGGCCGACCACCCTACCGGCTC 350105 30 100.0 38 CTACCGGCTC .............................. TAAAAGTGGCTTCCGGTTTATTCAAAATACTTTCCGGC 350173 30 100.0 38 ACTTTCCGGC .............................. CCCGACATGTTCCGAAACTTTAACTCTGGGGCGTTGAC 350241 30 100.0 39 GGGCGTTGAC .............................. TCGTTCGCACCACACCAAATGTAGTCGGCTTTTCGACGG 350310 30 100.0 38 TTTTCGACGG .............................. AGACCATGACGCGAATTCAAGATTTGCGTTTGGCCTTG 350378 30 100.0 37 TTTGGCCTTG .............................. CCTTCAGGAAGATTGATAGCATTATCCGTATTATTGA 350445 30 100.0 35 GTATTATTGA .............................. AAGGTTTAATCGAAGGTATGAAGGCGATGACCGGA 350510 30 100.0 36 GATGACCGGA .............................. AAAAACCTTTTCTTCCTTTTTGAAAGGCTTACAAAA 350576 30 100.0 38 GCTTACAAAA .............................. TCCCCAAGCGCAATGAGTTTGGTAAAGTCCTCGCTGCG 350644 30 100.0 36 CCTCGCTGCG .............................. TTTATTGACGGTCTTTTTTGCTTCTTTTGCAGCTTG 350710 30 100.0 39 TTGCAGCTTG .............................. TTTTTCATACAGCCTTGCCAGTTCTCTACGCACTTCATT 350779 30 100.0 38 GCACTTCATT .............................. TCCCCAAGCGCAATGAGTTTGGTAAAGTCCTCGCTGCG 350847 30 100.0 36 CCTCGCTGCG .............................. TTTATTGACGGTCTTTTTTGCTTCTTTTGCAGCTTG 350913 30 100.0 39 TTGCAGCTTG .............................. TTTTTCATACAGCCTTGCCAGTTCTCTACGCACTTCATT 350982 30 100.0 38 GCACTTCATT .............................. TCCCCAAGCGCAATGAGTTTGGTAAAGTCCTCGCTGCG 351050 30 100.0 38 CCTCGCTGCG .............................. TTCAAGACTTCCTCCGGAGAGCTATCCGGAGAAGCAGC 351118 30 100.0 36 GAGAAGCAGC .............................. ACAATACGGCTAAATTCATCTTCGCAGCCAACCACG 351184 30 100.0 36 GCCAACCACG .............................. AGGTGACCATTGATAAAAAAGAAACAGAAAAACTTC 351250 30 100.0 36 GAAAAACTTC .............................. GGCGGCACGATTGCGATCAACATCCAAAACATGACC 351316 30 100.0 35 AAACATGACC .............................. ATCTTTTCGGTGATTGTACTCATCGTTCCGTCTGT 351381 30 100.0 37 TTCCGTCTGT .............................. CAATATTCCAGCAATAGGTGACGTTCCAATCGAGACA 351448 30 100.0 37 AATCGAGACA .............................. CCAGTTCGACCCGTTCCACCACTCATATAAATAAATC 351515 30 100.0 36 TAAATAAATC .............................. GGGGATGGGACGACCACCAACCGAACCACGCCTGTC 351581 30 100.0 39 CACGCCTGTC .............................. ACGACGATTGCCAAAGAATCGCCAGAACACTCACAGGCA 351650 30 100.0 35 CTCACAGGCA .............................. TTCAGAATGAGTCCTGTCACGGTATACCCATTTTT 351715 30 100.0 37 ACCCATTTTT .............................. AAAATATGACGTTCGATCAATGGAAAAAGGAGCGGTT 351782 30 100.0 35 AGGAGCGGTT .............................. ATCATCGGGGGCTGGCGGCAGGAACAAGCACAGCA 351847 30 100.0 38 AAGCACAGCA .............................. ACTACACATTGTACGCATGCGGAAACGGCTACACATAC 351915 30 100.0 36 CTACACATAC .............................. AGAGGAAACGCCGCCGTTGTAAACATAGCTTTCAAA 351981 30 100.0 35 AGCTTTCAAA .............................. GAAAATCTCGGTTTCGTGGAAGTGTCAGTAAGATC 352046 30 100.0 34 CAGTAAGATC .............................. CTCCGCAAACGACCACGCCATCGGGTGGCCAGCG 352110 30 100.0 GTGGCCAGCG .............................. TATAGAAAGA ========== ====== ====== ====== ========== ============================== 37 30 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.80,-0.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [183,550] Score: 0.18/0.18 # # Final direction: F [5.37,0.18 Confidence: HIGH] >NC_014915 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 363492 30 100.0 38 ATTTTTTGGG .............................. CCAAGTACCAAAAGTGGCTTTTGGATTTCAACACGATC 363560 30 100.0 36 CAACACGATC .............................. ATCGGAGCAACGTCCCGCCCGATGTCGCCGACGTCG 363626 30 100.0 37 GCCGACGTCG .............................. TATTCGATTTCGATAAGCCCGCTGGCTTCGAGTATTT 363693 30 100.0 34 TCGAGTATTT .............................. TCCATCGAATCATTCGCTCACCTCCGCAGTCCTC 363757 30 100.0 37 CGCAGTCCTC .............................. TCGTCGACTATGCGGAAGCCAATCGCGGGCAGGCGCC 363824 30 100.0 38 GGCAGGCGCC .............................. TGGTACTGCGCGCGAATCCGCTGGCATTAGCCATTACC 363892 30 100.0 38 AGCCATTACC .............................. ATATGCCAGTTTGATTTTGTTAAACACCGTTTCAATGC 363960 30 100.0 38 GTTTCAATGC .............................. ACATGGTGGCGTCCAGCCTCGCCGGCCAGCGATAAAGA 364028 30 100.0 37 GCGATAAAGA .............................. ATTTTTCTAATTACTTTAGTATCATTTACTATTTTTT 364095 30 100.0 38 ACTATTTTTT .............................. TCCTGCCGTTCCACTCACCGCCGTTTCGCTCACCTGCG 364163 30 100.0 35 CTCACCTGCG .............................. TGGTATCGGTAGTAATACTCGCGCGCCGCAAAATC 364228 30 100.0 39 CCGCAAAATC .............................. TCGAAGATGAGCAGATAGCTGATAGCGTCATATTGAACA 364297 30 100.0 35 ATATTGAACA .............................. GCAGACGGGGACAGACGTATCAGAACATTGCTTGG 364362 30 100.0 38 CATTGCTTGG .............................. ATAACCCTGACCCCTTTCTGCCGCAGCAGAGCGATGAA 364430 30 100.0 36 GAGCGATGAA .............................. TTCTCAAGCGCAATCAATTTCCATTTGCGGCTTTCC 364496 30 100.0 36 GCGGCTTTCC .............................. AAAAATCGGCGGAGTTTGGAGGAGTTTGGCGTGAAG 364562 30 100.0 36 TGGCGTGAAG .............................. AAAGACGACCGTTTCGTCAAAACAGGCAGCCTCCCG 364628 30 100.0 36 CAGCCTCCCG .............................. AAACGGAGTATCTTGATAAGCTCGAAGAAAAAAACT 364694 30 100.0 36 GAAAAAAACT .............................. TAATTGAGGTGAAACGAATGGAGAGGCTCGATGTGA 364760 30 100.0 35 CTCGATGTGA .............................. AAGGAGGTGATAGAAGTGACAAAAGAAGAGATTGT 364825 30 100.0 39 AAGAGATTGT .............................. TGTTGCAACTCACGAAGCTGTTTTTGTTCCGGCGTCTCC 364894 30 100.0 37 CGGCGTCTCC .............................. TTCAACCCCCCGATGTCGGTGATCGCCACCGTTTTGT 364961 30 100.0 37 ACCGTTTTGT .............................. TGAAAATGTGTCCTATTTATCCCGTGATGTAGGTAAA 365028 30 100.0 36 TGTAGGTAAA .............................. GCGCAAGAGCCGCTAGCGGCGCAACCGAGCAGCTAC 365094 30 100.0 36 GAGCAGCTAC .............................. AACTCCTTCGCCATTTCTTTCAGCGATCGGGACAAT 365160 30 100.0 39 TCGGGACAAT .............................. ACAAGCATGCGTATCAAAAGGTGGCGGCGGTTCCGTTGG 365229 30 100.0 35 GTTCCGTTGG .............................. CTGTTTGATAATAGAAGCGTCTTGGCTATCATCCA 365294 30 100.0 35 CTATCATCCA .............................. CATTCCAGATGGATGATGTTAGCGATCGGATGCCG 365359 30 100.0 35 TCGGATGCCG .............................. GGACGGTACTACCGTCAGAAGGATGGCGAGATCTA 365424 30 100.0 37 GCGAGATCTA .............................. TCAGCCCGCCGTGCTCGGCAAGCTGTTCTACGTATTC 365491 30 100.0 35 CTACGTATTC .............................. ATAATTGGAAAAGCTCGATTGCCAACGCGGCATTA 365556 30 100.0 37 CGCGGCATTA .............................. TGTCGTCGCGATTGGGGATGTCATTATCGATGCGCGG 365623 30 100.0 36 CGATGCGCGG .............................. ACGCTCCCGGATCGCGAGGATCTCGGGGGCGTCAAG 365689 30 100.0 36 GGGCGTCAAG .............................. AACGCCTTTGCCGCCGTTAGCATATATTTTGCATCA 365755 30 96.7 35 TTTTGCATCA ...........G.................. TTCCAATTTTTTTCATTCTACATTCCTCCTTAGTT 365820 30 100.0 35 CTCCTTAGTT .............................. GCTTGTTTCTCACTCATCTGATCTGTACTCCTTTC 365885 30 100.0 37 TACTCCTTTC .............................. TCGTACACGATCACGTGTACGTCGAGGCGCCAAACCT 365952 30 100.0 35 CGCCAAACCT .............................. TCCCCTCGCCGACGATCAAGTCGGGCGGGAAATCG 366017 30 100.0 37 CGGGAAATCG .............................. CTGCAAGATGATATCACACAGCCGGGGCGGAAGCTGT 366084 30 100.0 CGGAAGCTGT .............................. TTTGAAATAA ========== ====== ====== ====== ========== ============================== 40 30 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.80,-0.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [261,258] Score: 0/0.18 # # Final direction: F [5.78,0 Confidence: HIGH] >NC_014836 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 994781 28 92.9 32 ATTGTCACTC -.............G............. GAAATACTGGCACCCTGGACCGACTTTTCAAT 994841 28 100.0 32 ACTTTTCAAT ............................ GTGTTTTCGCTTGACTCCACCGAATCGGGCGA 994901 28 100.0 32 AATCGGGCGA ............................ ATGATCTGTAATAGCCCGCAGCGTTTCAGTGC 994961 28 100.0 32 GTTTCAGTGC ............................ CTGATCCAGTCCTGCCCCTTGCCGGTCACACG 995021 28 100.0 32 CGGTCACACG ............................ CACTAACGCCAATAGGCCCTGCTGTATCGTGC 995081 28 100.0 32 TGTATCGTGC ............................ CCTCGCCCTGCGCAGCCAGCGCCGGGATATAT 995141 28 100.0 32 CGGGATATAT ............................ GACCAACGATAGTAGGGAGCTGTTCAGCGATT 995201 28 100.0 32 TTCAGCGATT ............................ AACGGAATCTGTAACGCTGATATAGCGCTGCA 995261 28 100.0 32 TAGCGCTGCA ............................ TTTGGATGGGCAGGAGCTGCTGGATGGTTCCT 995321 28 100.0 32 GATGGTTCCT ............................ ATCCCCGAGACATTGGCCGAGGGTGCCCAGGC 995381 28 100.0 32 GTGCCCAGGC ............................ CACATTACCGACCAGGTCGGCGATACCCGCCA 995441 28 100.0 32 ATACCCGCCA ............................ GGCTCGACAATCCACGCCACAAACTACCGGCT 995501 28 100.0 32 ACTACCGGCT ............................ AGAGGGGAGCCTGTTTTGCTGGGACTTGAACT 995561 28 100.0 32 GACTTGAACT ............................ GATATTACCATGGATGCTGATGATATCGAGCA 995621 28 100.0 32 ATATCGAGCA ............................ CAGTACCAAACCTCCATCGTGCAGCGTTCGCT 995681 28 100.0 32 AGCGTTCGCT ............................ GCTATCACCCGGAAGTCGCCCAGGTTCCAATC 995741 28 100.0 32 GGTTCCAATC ............................ TGTCCGCAATGGTATACGAAACCAAGCAGCTC 995801 28 100.0 32 CAAGCAGCTC ............................ GCTAGCGGCCTGCTGTACGACGAGGATATACA 995861 28 100.0 32 AGGATATACA ............................ GGAGCTGCGCCGGGTGTCGAAATACATACCGA 995921 28 100.0 32 TACATACCGA ............................ GACAACGAGTCTTTACGATACCACAATCGGCA 995981 28 100.0 32 ACAATCGGCA ............................ TGTGCTCTCCCGCTGTCGCTGTCTCAATTCAA 996041 28 100.0 32 CTCAATTCAA ............................ AAATGCCGGGAGTGCAAGGGAAAGGGCAAGGT 996101 28 100.0 32 AGGGCAAGGT ............................ GTTACCCAGCAGACACCACCCATGTGCCATAT 996161 28 100.0 32 TGTGCCATAT ............................ TCAGCGCCGCGCCATTCTGGTACAGGACCTAT 996221 28 100.0 32 CAGGACCTAT ............................ CTATAGGGATCATTCTGGTTCTTCTGTTTCAA 996281 28 100.0 32 TCTGTTTCAA ............................ CTACCGAGATACACCGGACACCTGCGCCAATT 996341 28 100.0 32 TGCGCCAATT ............................ ACTGACACTCGGATTCAGCACAAGATTTTTCA 996401 28 100.0 32 AGATTTTTCA ............................ GACGGGAAGGCCATTGACCAGTGCGATATCAA 996461 28 100.0 32 GCGATATCAA ............................ TTCACCAGGCTGCCATACACAAGGTTCAATTC 996521 28 100.0 32 GGTTCAATTC ............................ GGGAGGGTAGGGTGTGGCTGAACCCTCCTTAT 996581 28 100.0 32 CCCTCCTTAT ............................ TCATGGCTATATGATTGCAGATGACGCAAACT 996641 28 100.0 32 GACGCAAACT ............................ GATCATCTGCGGCAACGTAGTCATCGCCTTCA 996701 28 100.0 32 ATCGCCTTCA ............................ GATGACAGCGTACCTGGTGGCGAGTGCGTTCA 996761 28 100.0 32 AGTGCGTTCA ............................ ATGTACGGGGTTTCATCTACCGACCAATACCC 996821 28 100.0 32 ACCAATACCC ............................ TGAATCTTGGTGTGGCCAAGCTGGAGCCAATT 996881 28 100.0 32 GGAGCCAATT ............................ TGGAGCGTCTTCCGACACTGCCAACTTCTTCC 996941 28 100.0 32 AACTTCTTCC ............................ TTGGTATCCATCGTAAGGGTCGTGGGTGATAT 997001 28 100.0 32 TGGGTGATAT ............................ CCAATGTGGGTGATTTTTGAGCTTCAGGGGAT 997061 28 100.0 TTCAGGGGAT ............................ TATAACTGTA ========== ====== ====== ====== ========== ============================ 39 28 32 TTTCTGAGCTGCCTATGCGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [61.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1089,129] Score: 0.18/0.18 # # Final direction: R [0.45,1.15 Confidence: MEDIUM] >NC_014915 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1989249 30 93.3 35 AAGTGAAAAT ..........TC.................. GGACAAGCGAGGAGTTGAAAGCATGCGCGACCCGT 1989314 30 100.0 38 CGCGACCCGT .............................. CCAATTTTGCCTGGTCGTAGCGGCGGGCGTCAATGTTG 1989382 30 100.0 36 GTCAATGTTG .............................. CGTTTCCGGCTGCGCGAGCTGGGGCGAGATGAAGCC 1989448 30 100.0 36 AGATGAAGCC .............................. AAGAAATGCAACGGCATGGTATTGATGTCTCTATTG 1989514 30 100.0 36 GTCTCTATTG .............................. TAATCTTGAACCAGTCCATAAAATAGTTGTCGATCT 1989580 30 100.0 35 TTGTCGATCT .............................. ATTTTGCCTGGTCGTAGCGGCGGGCGTCAATGTTG 1989645 30 100.0 37 GTCAATGTTG .............................. CAGCGTTGGAGCGGTTTTGTCAATGTTCGACACCGCA 1989712 30 100.0 36 CGACACCGCA .............................. GCGGCAAATCTTCCTTAGCCCTTGCTTCGTCCGGTT 1989778 30 100.0 35 TCGTCCGGTT .............................. ATGAGTGGAACGAGAGCCGCCGCAATAGCAGGGGA 1989843 30 100.0 38 TAGCAGGGGA .............................. CCGATCAAAATACATGAACAATTGGAAACATTTTATCA 1989911 30 100.0 38 CATTTTATCA .............................. TAGGGAGGATGATTCACTATGACACTTGTCGAAGCTCT 1989979 30 100.0 38 TCGAAGCTCT .............................. CACTCCCCTTATTGCCCGTCCGATCGTCTCGGGCGGGC 1990047 30 100.0 36 TCGGGCGGGC .............................. GTAGGGAGGTTAGAAAAAACAAGGATTGAAAATGAC 1990113 30 100.0 35 TGAAAATGAC .............................. ATGCCGGATAGCGCCAACAAGACGTCCCGTGTCAA 1990178 30 100.0 36 CCCGTGTCAA .............................. GGTTTCGCAACTTGGGCGCCCTCAAACACTACCGAA 1990244 30 100.0 37 CACTACCGAA .............................. TGTAGAGCGCTATTATGCTGGAAATCCGCCACAACGG 1990311 30 100.0 35 GCCACAACGG .............................. AAGGTACAGGTCAGATTTTCCATCACTACAGCATG 1990376 30 100.0 35 CTACAGCATG .............................. GCAAGAGCCATCGCTGACGCTGTTTCTAAAACGAT 1990441 30 100.0 35 CTAAAACGAT .............................. ACGGCTTCTTTCCAGCAAGCACTTTCAGGTTTTTC 1990506 30 100.0 37 CAGGTTTTTC .............................. AGTGTTTAGTTCTGATAGATGAAGCAGGTATTATGTT 1990573 30 100.0 39 GTATTATGTT .............................. GGAACGTTTTGCGATTTATGACAATGAGGGCTATGGGTA 1990642 30 100.0 34 GCTATGGGTA .............................. CCGATCACGCACCAACTCGTAGTCACTTTTCCCA 1990706 30 100.0 35 ACTTTTCCCA .............................. TTTTTGCTGTGTTTGGTGTATTTGATGAGTTGCTC 1990771 30 100.0 35 TGAGTTGCTC .............................. GTATAGCGGCACAGCCTCCGGAAAATTAACTAAAT 1990836 30 100.0 40 TTAACTAAAT .............................. GCAGCTATACCAGGATATGTTCCCACTGAACTCGGCTGGT 1990906 30 100.0 36 CTCGGCTGGT .............................. TTAACGGCATGCGCTCCCACAGATACGGCTTCTCGT 1990972 30 100.0 35 GGCTTCTCGT .............................. GAGAGCTAGTGATTTTTACATGTTGCTGTTACAGT 1991037 30 100.0 34 CTGTTACAGT .............................. GAATCCGGTGTATAGCATGATGATGCTATTTGGA 1991101 30 100.0 38 GCTATTTGGA .............................. CGTGCACCAATCCTTGTGTGATCTCCTGTTGGATGGTA 1991169 30 100.0 38 TTGGATGGTA .............................. GGTCTTGAGGCCGGCGACCGGTGATGCATGGTAGAAAA 1991237 30 100.0 35 TGGTAGAAAA .............................. GCGAAGCATCGCGCCTGAAATTAACGATGTGCTTA 1991302 30 100.0 37 GATGTGCTTA .............................. CGAAGCCAAAGCGGTTGACAGCGAGGGCAACGAAAGC 1991369 30 100.0 36 CAACGAAAGC .............................. TCGTTGCCTCCGATGAATTGAATGTTGTTGTAGTCG 1991435 30 100.0 35 GTTGTAGTCG .............................. TTCGCTCAATGCTAGCAGGGGCGACCCCCCAGCGT 1991500 30 100.0 35 CCCCCAGCGT .............................. CGGAACAATAGCACTGATCGGAACCCCCAGCAAAT 1991565 30 100.0 CCCAGCAAAT .............................. CCCCAAACCA ========== ====== ====== ====== ========== ============================== 36 30 36 GTTTCAATCCCTCATAGGTACGATAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [220,184] Score: 0/0.18 # # Final direction: R [0.27,5.28 Confidence: HIGH] >NC_014910 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 280252 36 100.0 30 NNNNNNNNNN .................................... CCCGCCATGAGTGGGTGATCGTGGGGCGCA 280318 36 100.0 30 NNNNNNNNNN .................................... TCCGCAGCGCAGCGAGGACGACCCTGGCGG 280384 36 100.0 30 NNNNNNNNNN .................................... ATGCGACATCCGCGCACTGTCTTCCGCAGC 280450 36 100.0 30 NNNNNNNNNN .................................... GTGACCACGCCCACTACCCCGTTCAGCAGG 280516 36 100.0 30 NNNNNNNNNN .................................... CATCGGTGGCGCGGTTCGCCAAGCAGATGA 280582 36 100.0 30 NNNNNNNNNN .................................... ATCGGCGACGAGCTGGTGAACCTGCCCATG 280648 36 100.0 30 NNNNNNNNNN .................................... ATGTGCCGGATGCAGCGCTCCAACGCTTCG 280714 36 100.0 30 NNNNNNNNNN .................................... TGCGGGTATGTGTTCGGTAAGGGGTACCCA 280780 36 100.0 30 NNNNNNNNNN .................................... GAGATTCTCGTCATCAGCTCCGCGCGCCTT 280846 36 100.0 30 NNNNNNNNNN .................................... TGGAAGACCGCATAAGAAATCAGCAGTCAG 280912 36 100.0 30 NNNNNNNNNN .................................... CCCAGCCTATGCCGGGTTCACCGCGCGATG 280978 36 100.0 30 NNNNNNNNNN .................................... GCTGCGTTAGTGCCGGCGCCGCCCGACCAG 281044 36 100.0 30 NNNNNNNNNN .................................... TATCGCCACTAGCACCGCGCGCACCACCGC 281110 36 100.0 30 NNNNNNNNNN .................................... CCGCACCCATCGCCGGAACTACCGCAAGAG 281176 36 100.0 30 NNNNNNNNNN .................................... GGCGACGACGTGATGGCGGTTGCCGATGTG 281242 36 100.0 30 NNNNNNNNNN .................................... CCAAGGGAATGAAGGACGCAGTGATCACCG 281308 36 100.0 30 NNNNNNNNNN .................................... CCATGGGCCTGAGTGCCGCCGCCACGGAGA 281374 36 100.0 30 NNNNNNNNNN .................................... CCCGGCGCCTTGGCGAATGCTTGCAGGCCA 281440 36 100.0 30 NNNNNNNNNN .................................... GATAGGCACCGGCAAGCCATCGCTCATCTT 281506 36 100.0 30 NNNNNNNNNN .................................... GCCACCATCAACCGGCAGCGGCAATACACG 281572 36 100.0 30 NNNNNNNNNN .................................... ATATTGAACGAGGGGTTGGAGTGGTCGGAC 281638 36 100.0 30 NNNNNNNNNN .................................... AGGAGCAGGTAAATGCAACCCTTCGTGGTG 281704 36 100.0 30 NNNNNNNNNN .................................... ACACACTAGCGGGCCATCAATGGCACAAAG 281770 36 100.0 30 NNNNNNNNNN .................................... TGGCATACCCAACAAGCATTCCATTTCCCC 281836 36 100.0 30 NNNNNNNNNN .................................... CGCATGGATGCGCTGCCTCCAGACAGTGCC 281902 36 100.0 30 NNNNNNNNNN .................................... GCGACAATCGTACATATGGCCTGCTGAACG 281968 36 100.0 30 NNNNNNNNNN .................................... AGGTCGGCATCTTGTAGGTTGGCACGCCGC 282034 36 100.0 30 NNNNNNNNNN .................................... GGCTCCAACACCATCATCAACGGCATTGAG 282100 36 100.0 30 NNNNNNNNNN .................................... TGTCCTGCAGCGCATGCGAGAGGAAGTCGA 282166 36 100.0 30 NNNNNNNNNN .................................... CGGCCAGACTGGCTATGACGAATGCAGCGC 282232 36 100.0 30 NNNNNNNNNN .................................... TTGTGCGGCCACGCGGAGCCGCGCGACGCC 282298 36 100.0 30 NNNNNNNNNN .................................... GGCTCCAACACCATCATCAACGGCATTGAG 282364 36 100.0 30 NNNNNNNNNN .................................... TGTCCTGCAGCGCATGCGAGAGGAAGTCGA 282430 36 100.0 30 NNNNNNNNNN .................................... AGCTCGATTCCTGAAGTCATCGTAATTCTT 282496 36 100.0 30 NNNNNNNNNN .................................... TATGACTATGACCCTGCATTGCTGGCGCGA 282562 36 100.0 30 NNNNNNNNNN .................................... ATATTCAGGCGGGCAATCTCGCCGGCTTGC 282628 36 100.0 31 NNNNNNNNNN .................................... AGCAGCCGGCTTGATAAAACCTAGTCATGAG 282695 36 100.0 30 NNNNNNNNNN .................................... GCGCCGCCAGATGGTGCGCAACCTGAGGAA 282761 36 100.0 30 NNNNNNNNNN .................................... CGACAGATAAGCATGCACGTCGGCCAAGGA 282827 36 100.0 30 NNNNNNNNNN .................................... TCGGCCTTCTATGGCAAGCGGGAAGTTCAG 282893 36 100.0 30 NNNNNNNNNN .................................... TATGACTATGACCCTGCATTGCTGGCGCGA 282959 36 100.0 29 NNNNNNNNNN .................................... ACGGTGTCTCCGGTCTGCACGTCGATCTG 283024 36 100.0 30 NNNNNNNNNN .................................... TCTGCTGGATGGCGGAAGAACGGGGGCGAG 283090 36 100.0 30 NNNNNNNNNN .................................... TCAGTGACACGCTTGATAAATACCCTCTTG 283156 36 100.0 30 NNNNNNNNNN .................................... ACGGCCTCGCGCAGGGACTCGCTGCCCACC 283222 36 100.0 30 NNNNNNNNNN .................................... TTGATTGACCCGCTTGCATGGCCTCTGAAC 283288 36 100.0 30 NNNNNNNNNN .................................... TCCTGCACACTAACCAGCGGGCCGCACCGA 283354 36 100.0 29 NNNNNNNNNN .................................... CCCGGGACTTCACCTTGTCCAGCTTGCGG 283419 36 100.0 30 NNNNNNNNNN .................................... CACGAATCGGGCTGCCTCGTCTTCGTTGTG 283485 36 100.0 30 NNNNNNNNNN .................................... TGGATGATCTCGGTCCCGCTCGCGGCGTGG 283551 36 100.0 30 NNNNNNNNNN .................................... CGGGGCGAGCTGCTGGTGCATGCCGGCAAG 283617 36 100.0 30 NNNNNNNNNN .................................... CGGGACCCCCAGCAGGGCGCGCCCTGCACC 283683 36 100.0 1 NNNNNNNNNN ............................ATTT...A NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 53 36 29 ATTCTAGATCACTGGGATATGCGCACTGGCCGGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [9,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.40,-3.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [210,335] Score: 0/0.18 # # Final direction: F [0.78,0.64 Confidence: LOW] >NC_014915 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2960189 30 96.7 36 CCTTTTTCAA -............................. CCCCATTCCGTACATGATTAAACAACTTTCCAAATA 2960255 30 100.0 36 TTTCCAAATA .............................. TTTGTGGTGTCGTTCGTTTTCGCAGTAATGAAGAAA 2960321 30 100.0 37 AATGAAGAAA .............................. TTTCATCCAGACAACAAGATGGGCAGCTTCTTCGTGA 2960388 30 100.0 36 TTCTTCGTGA .............................. AGAAGATGAAGACGAAGCACTCGATTTATTTGGCGG 2960454 30 100.0 37 TATTTGGCGG .............................. ATCATTGACCGACTCGCTCGCTATGAAGCGGACATGT 2960521 30 100.0 39 GCGGACATGT .............................. ATGTGTCATTTCAAATCCCCCCTTGGTTTTGTCTTGGGA 2960590 30 100.0 38 TGTCTTGGGA .............................. GTATTTGAATTTGGCGGAAAAGACTATGCATGGGATAG 2960658 30 100.0 36 CATGGGATAG .............................. ACGCTGTCGTACAGTCGTCCGATTTCAAAGAACAGG 2960724 30 100.0 35 AAAGAACAGG .............................. GGGAAAAGCCCACCAGACGCGCCAAGGATGACCAA 2960789 30 100.0 35 GGATGACCAA .............................. ATTAACATGACCGCTACATACGCAAAAGTATTATA 2960854 30 100.0 39 AAGTATTATA .............................. CCGCAAGAGGGTTTGCGGAAGCACGTTGAACCGGAAAAA 2960923 30 100.0 36 ACCGGAAAAA .............................. GGCACGACCACCAGCCGAACCATGCCTGTTCAAGTG 2960989 30 100.0 38 TGTTCAAGTG .............................. GGCGAGGTTCTTCAGCGTGCTTTCTTCGTCCTGTCCAA 2961057 30 100.0 35 TCCTGTCCAA .............................. GCCAGCCGGAACAGCCACAACAGCAGGATTTGCCT 2961122 30 100.0 35 GGATTTGCCT .............................. AGACATCCAAAGAAACAGACGTACGACGCGGAATA 2961187 30 100.0 37 ACGCGGAATA .............................. CCCATTGACGATAAAAAGAAACCCGGACGCTCGCAGG 2961254 30 100.0 37 CGCTCGCAGG .............................. TCATGCGCGCATCCTCCGCTGGTACGCCTAGCGACCG 2961321 30 100.0 36 CTAGCGACCG .............................. TCGAATTTTTAAAGGAACTCAAGAAGTCTATACACT 2961387 30 100.0 TCTATACACT .............................. TTTACCCGTG ========== ====== ====== ====== ========== ============================== 19 30 36 GTTTCAATCCCTCATAGGTACGATAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1694,109] Score: 0.18/0.18 # # Final direction: R [0.18,5.28 Confidence: HIGH] >NC_014915 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2962467 30 100.0 39 TCATCCATTG .............................. CAACTGTTCGTCTGTCATCAACCCTTTGGACAGTTCCGC 2962536 30 100.0 35 ACAGTTCCGC .............................. TGTTTCTAAGGTGCCTGACTCTTTTACTCCTTTAT 2962601 30 100.0 38 ACTCCTTTAT .............................. TCCCGGGAAAGTACAAGGCTGTTTATGAAGCCAGCTCA 2962669 30 100.0 38 AGCCAGCTCA .............................. TGAATTCGTTTTAACTCGAGATTTAGGTCGGTTATTTT 2962737 30 100.0 37 CGGTTATTTT .............................. TTTTTATGCCCAATGAGATTTTTGAAGATTTGCAAAG 2962804 30 100.0 37 ATTTGCAAAG .............................. CTTGGCATGAGCGAGCGGAAATATTATCGGTTGAAGT 2962871 30 100.0 36 CGGTTGAAGT .............................. CGGCAATTGCGTTGCCGGTACTTGTCCATTTGCGTC 2962937 30 100.0 35 CATTTGCGTC .............................. AACCGCGGCAGTGTATCGCTTCCATTCGTCGTCCG 2963002 30 100.0 35 TCGTCGTCCG .............................. GGCCGTGCCGCTGGCTTTTTGGTGCTGAAGTCGAA 2963067 30 100.0 37 TGAAGTCGAA .............................. TGAGCGGGTCACTCTCGATGTATTCCCCGCTTGAATG 2963134 30 100.0 36 CGCTTGAATG .............................. GGACGAAAGGAGTATTATTTATGAAACTTGAAACAT 2963200 30 100.0 37 CTTGAAACAT .............................. GGCAAGGTGTCACTGGTCGGGTACTGCGTGCAAAAGA 2963267 30 100.0 35 GTGCAAAAGA .............................. TGGTATCGTAAACTTCAGTGGCTGATTTGAATTTG 2963332 30 100.0 37 TTTGAATTTG .............................. AATGCGGTCGTTGCGGCGCTTGGATGAACGGGAAGGC 2963399 30 100.0 36 ACGGGAAGGC .............................. GTGCGCTGGGTATTGCGTTTTGTTAGATATATAGAT 2963465 30 100.0 35 ATATATAGAT .............................. GCAGTCGCGAGCAGATCATTGTATTGTTGTTCCGT 2963530 30 100.0 36 GTTGTTCCGT .............................. ATCCCCACGCGTAGACTTTACCATCCACCGTCAACG 2963596 30 100.0 38 ACCGTCAACG .............................. GGCTCGACGTTCGTGTGGGGCGAGGACGTGACAAAAAT 2963664 30 100.0 37 TGACAAAAAT .............................. TTGACAATCCGCAGACGGCCAACGCGGAGGGGTTTTT 2963731 30 100.0 36 AGGGGTTTTT .............................. TAACTTTTTCAAAAATTGGTCATAATGCCGTACTAG 2963797 30 100.0 35 GCCGTACTAG .............................. TAGTCTGGGCTCTCCATCATCCCCACCATCCCAAC 2963862 30 100.0 35 CCATCCCAAC .............................. TACCGAACCACGCCTGTTCAAGTGCAAGGGCTGTC 2963927 30 100.0 AAGGGCTGTC .............................. CCCAAAAAT ========== ====== ====== ====== ========== ============================== 23 30 36 GTTTCAATCCCTCATAGGTACGATAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [51.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [66,203] Score: 0.18/0.18 # # Final direction: R [0,5.32 Confidence: HIGH] >NC_014926 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1166828 28 92.9 35 TGAATCCAGA -...................G....... GTGCCCTGTTAACGGTTGGCCGAAGGTTAAGAAAG 1166891 28 100.0 39 GTTAAGAAAG ............................ TCCTCCAGGGTTAGCCTCAGGAGCTCAGGGTCAAATTTC 1166958 28 100.0 38 GTCAAATTTC ............................ CGCCACAACACGGACATTTAAACTCTTCTGCTCTAAAA 1167024 28 100.0 39 TGCTCTAAAA ............................ CTCCAAAACTCCCGGCCTGAGCCTCCCCGTATATTGCAA 1167091 28 100.0 37 TATATTGCAA ............................ ACTTTTCTATTGCGCTGTAAGCCTCAGCTATCACGTT 1167156 28 100.0 37 CTATCACGTT ............................ TAGGTGAAAACGCCTCAATAGCAAGCTTTTATCGTTG 1167221 28 100.0 38 TTTATCGTTG ............................ CGAAATAATAGAGTTAGCGACAAAGATTTTCGACAGAA 1167287 28 100.0 38 TTCGACAGAA ............................ GGGCAAGGGCAAAGTTTGGAAAATTCAATTGCCGAGTG 1167353 28 100.0 37 TTGCCGAGTG ............................ TGGAAGCTCAACAAGGAGCAGATGAAGGCGAAAAAAC 1167418 28 100.0 36 GCGAAAAAAC ............................ ACTACTGGGAACAGTCCAGTCAGACTGGAAGGGAAC 1167482 28 100.0 36 GGAAGGGAAC ............................ ACTACTGGGAACAGTCCAGTCAGACTGGAAGGGAAC 1167546 28 100.0 38 GGAAGGGAAC ............................ ACGCCTTTCCAAACTGTTCTAATGCAGGCACGGTAGTT 1167612 28 100.0 37 CACGGTAGTT ............................ TTGCTCCAGCCGCAACCGTGCCGAGGGCGTAGCCAAA 1167677 28 100.0 37 CGTAGCCAAA ............................ GCTACTGCAGACGATTGTGTCAAAATAGTTCAGCCTT 1167742 28 96.4 40 GTTCAGCCTT ..........T................. TGGAGTTTCCACAGAAGTCTGCCCAGGCCTTTACTCTAAG 1167810 28 100.0 36 TTACTCTAAG ............................ TAACGATGAATCTCAGATTACTCAACAATCTGAGAC 1167874 28 100.0 37 AATCTGAGAC ............................ CAACTTCAGAAGAAGGGCCTCGTTGCCCTTAAAAAAG 1167939 28 100.0 36 CTTAAAAAAG ............................ TTTTGCTGAGGTCTTGGAAGATTTTCTTCAGCTTCA 1168003 28 100.0 36 TTCAGCTTCA ............................ TAGCTGGGGATTCCCTACTCTCGATTTCGTTACGCT 1168067 28 100.0 36 TCGTTACGCT ............................ TATTCTCACCTACAACAAGGTAAACGCCATTATTGA 1168131 28 100.0 36 CCATTATTGA ............................ AGAAAACCGTTTCCCTGTAGTTTGACAGTATAATAG 1168195 28 100.0 37 AGTATAATAG ............................ CCGTTTCAATTCTGGGGTCAAAGTACGGAGCAAGCGG 1168260 28 100.0 35 GAGCAAGCGG ............................ TCCTGAAGAGCCATATCTGATTACAAGAAAATGTA 1168323 28 100.0 AGAAAATGTA ............................ CAACCTTCG ========== ====== ====== ====== ========== ============================ 24 28 37 GTTTAAATCCCACTTGTTCAAATAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:71.43%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [125,5621] Score: 0.18/0.18 # # Final direction: R [0.27,0.59 Confidence: MEDIUM] >NC_014926 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 1211026 35 100.0 43 CCCATCAAGG ................................... TGGACCTCTCTACGATATAGAGGTTCCACCCTTGGGAGTCTTT 1211104 35 100.0 38 GGGAGTCTTT ................................... GCAGGGAGGGTCACCTTGAAAGCTTCGGCTACTACCTT 1211177 35 100.0 45 CTACTACCTT ................................... CGTGTCTGAGTACTGGGTGTTCTCCTCCCATCTTCTATCTTCATA 1211257 35 100.0 45 TATCTTCATA ................................... AATCTAAAAGATATGAATCAAAGGTAATAGTATAGCTACTGTTGA 1211337 35 100.0 36 CTACTGTTGA ................................... TTTCTGCTTTCCTCACTACTCTCATTCTGCACCTCC 1211408 35 100.0 37 CTGCACCTCC ................................... AGTCCTTTGTCTTTGAGTTGAGAGGCTACCCTGAGTA 1211480 35 100.0 43 ACCCTGAGTA ................................... TCATGTTCCACCTCCTCTTGATTTTTAGATTTCGGGAGCTAGG 1211558 35 100.0 41 GGGAGCTAGG ................................... CAAAATCCTACAACAGATAAAATTGAAATCAAACACTATCC 1211634 35 100.0 45 AACACTATCC ................................... CTGGGCCTCCAAGGCTGTCCTGCCTTCGGCGGTAAAGAATCCTAG 1211714 35 100.0 35 AGAATCCTAG ................................... GCAATCCGCGTACTGGGTGTTCTCCTCCCACCTCC 1211784 35 100.0 45 TCCCACCTCC ................................... ATCATATTGATGGGGGTAATATTCTTCTATTATTATTTCCTGTAA 1211864 35 100.0 TTTCCTGTAA ................................... TTTTCAACACCACTTCCTTTATTTCGGAAGTGGTGGTATCAAA ========== ====== ====== ====== ========== =================================== 12 35 41 GTTGAAATGCCCGAAAAAGTAGACGGGATTGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:51.43%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.00,-5.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [315,355] Score: 0/0.18 # # Final direction: R [0,0.37 Confidence: MEDIUM] >NC_014926 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1539364 28 100.0 37 TGCTTTTAAC ............................ TAGATATTGGGGGTAAGCAAATTCAAATAAATCAATG 1539429 28 100.0 37 TAAATCAATG ............................ CACGAAGAGGAGATGAGATATTTCCACATCTACTACA 1539494 28 100.0 39 ATCTACTACA ............................ TTCTTGTCCTGAAAGAGGCCATTGAGAACGCCCTCAAAG 1539561 28 100.0 37 GCCCTCAAAG ............................ TTGGCGTAGCTATTCACAAAAGCCAGCTCTATCGTGG 1539626 28 100.0 35 TCTATCGTGG ............................ TTAGGAGCTTCTGCCTGAGTTTCTCTATTTTGTTG 1539689 28 100.0 38 TATTTTGTTG ............................ CGGGGGAGGAGATGAACTTGCGTTCCCTATATGACGAC 1539755 28 100.0 38 ATATGACGAC ............................ GGCGACCTTGAGACCGTAAGGGAGTTCTTAAAGAAGAG 1539821 28 100.0 37 TAAAGAAGAG ............................ GATTACGAATACGAGGTTACCACCGCCACCTTTGAGG 1539886 28 100.0 38 ACCTTTGAGG ............................ GAGCAGGAATAGAACTCAAGAGAGAAAGGCCGTTTTAG 1539952 28 100.0 GCCGTTTTAG ............................ CAACCTTTGG ========== ====== ====== ====== ========== ============================ 10 28 37 GTTTAAATCCCACTTGTTCAGATAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [58.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [66,306] Score: 0.18/0.18 # # Final direction: R [0,0.45 Confidence: MEDIUM] >NC_014926 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 321209 29 100.0 37 GCAAATGTGG ............................. GTCAGGTGGTTGTAGAGGACGTAGTGGCCGTTGACGG 321275 29 100.0 36 CCGTTGACGG ............................. TTCGAGAACCATCTGGTTAACCCTCTGAGGAGTTAC 321340 29 100.0 36 GAGGAGTTAC ............................. ACGCTTTCGAGGGCCGAAATCAGCTTCCCTGCTGCG 321405 29 100.0 37 CCCTGCTGCG ............................. CAAGGGTGAGAGTCTGGGGCGTGTCGTTCATTACCGG 321471 29 100.0 38 TCATTACCGG ............................. TTTTTACGAATAAGTTTTTCAAACCTGTGAGAAGCAAA 321538 29 100.0 38 GAGAAGCAAA ............................. CCTCGTCTGGCCGACGGGCGGCGGTTGATTAGGTTCAG 321605 29 96.6 TTAGGTTCAG .........................C... GAGTAATCGTAGTCGTAGCGGACCACGGCA ========== ====== ====== ====== ========== ============================= 7 29 37 GTTTGAAATGCCCTATAAGGGATTGTGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.62%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-4.20,-4.20] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [309,181] Score: 0/0.18 # # Final direction: F [0.68,0 Confidence: HIGH] >NC_014926 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1609896 28 100.0 35 CCGAAGGTTG ............................ CCAAAAAGGCTCCGGAGCTTCCTAAGGAGCTCAAG 1609959 28 100.0 38 GGAGCTCAAG ............................ TATAAAACTCAAAGAGCTTGAACTAAAACACGAGGAAG 1610025 28 100.0 38 CACGAGGAAG ............................ GAAGATAGAGTAAAGTTTCATTAAGTAGCGACGGGCGG 1610091 28 100.0 40 CGACGGGCGG ............................ ATTTCGGACTGGTATGTTTTGAACCTGCCCGCCAAGGACC 1610159 28 100.0 39 GCCAAGGACC ............................ TAAACCTTCTCAACTGTCTCAATCGTCCTTTCGTAAGAA 1610226 28 100.0 35 TTCGTAAGAA ............................ TCCAATTATACTCCTAAATATTCTTTTTTAAACCA 1610289 28 100.0 TTTTAAACCA ............................ GCGGCATGGG ========== ====== ====== ====== ========== ============================ 7 28 37 GTTTTATTTGAACAAGTGGGATTTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:71.43%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [6043,663] Score: 0.18/0.18 # # Final direction: F [0.45,0 Confidence: MEDIUM] >NC_014926 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 1493996 35 100.0 44 ATAAGTATCG ................................... TATAACAACAACAATAATAATATACTGAGGGAAGATATTGTAAT 1494075 35 100.0 36 ATATTGTAAT ................................... GCAGATCGTAATTGAGATGAAACACAGTGCTGCCTC 1494146 35 100.0 42 GTGCTGCCTC ................................... ATAATGCTTTCTGGGTCATTCCTACAATACGCTGTAGGAATG 1494223 35 100.0 TGTAGGAATG ................................... CCTTGATGGG ========== ====== ====== ====== ========== =================================== 4 35 40 GTCGCAATCCCGTCTACTTTTTCGGGCATTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:51.43%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.50,-5.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [264,161] Score: 0/0.18 # # Final direction: F [0.37,0 Confidence: MEDIUM] >NC_014926 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 571094 35 100.0 44 CCCATCAAGG ................................... GGTCTAAAGAAATCTAAAGGTTCATGAATTGCAAGTAAAGCTTT 571173 35 100.0 40 GTAAAGCTTT ................................... GATCCTCCATCAGCTGGGATCGTCTGTCTCTATAGTAATT 571248 35 100.0 38 TATAGTAATT ................................... GGGGGCCCTAGCCCCCGTAGTTTTCCTCGTACCAACGG 571321 35 100.0 37 GTACCAACGG ................................... AGGCCCGTAAGCTGCATAATCAGTTTTCCGTTAATAG 571393 35 100.0 42 CCGTTAATAG ................................... CTAGCTGCTCGTCAGTTGCAGATTCAGGGTCTGAAAAATCAA 571470 35 100.0 45 GAAAAATCAA ................................... GAGGGGCCCAGAGGGCCGCGCACCACCCAGGTTACTTTATTATTA 571550 35 100.0 45 TTTATTATTA ................................... ACATTGATGGAGCTACTGGGATAACAACTTGCTGGTCAATCACGA 571630 35 100.0 44 TCAATCACGA ................................... GTCACCGGTACTCCTCCGAGTGACCCGACCACCTCTTCCTTCTG 571709 35 100.0 42 CTTCCTTCTG ................................... ACTCCCGCCCTTCTCTTATCTTAATAATCTTCTCAATTTTTA 571786 35 97.1 TCAATTTTTA ..............G.................... CTCGCACCTCCTCTTTTAGAGTTTTCGGGGGAGGAGGCGCGCC ========== ====== ====== ====== ========== =================================== 10 35 41 GTTGAAATGCCCGAAAAAATCGGCGGGATTGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [11,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-5.20,-5.20] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [483,166] Score: 0.18/0.18 # # Final direction: F [1.23,0 Confidence: HIGH] >NC_014933 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 3657027 32 96.9 35 GACCAACCGA ...............T................ TATTTCGGCGTTTTGCGGGTGGCAGTCTCCCCGCT 3657094 32 100.0 34 TCTCCCCGCT ................................ TGATGACAGATTGTGCGTTGCCGTCAAGAGACGA 3657160 32 100.0 33 CAAGAGACGA ................................ TTATAACTATAACGCTCCGATTGCGCTTTCGAT 3657225 32 100.0 34 CGCTTTCGAT ................................ AACGCTTAGCTATCGGCATGACGGACAATATACA 3657291 32 100.0 33 ACAATATACA ................................ GGCAACATACCACTTTTATAAATGAAATAATCT 3657356 32 100.0 35 GAAATAATCT ................................ TTGGTATTCGACCAATTAATATACTACCCAAATAA 3657423 32 100.0 34 ACCCAAATAA ................................ CATTTCTTTGTAGTCCAATTCTGTTCCACAAAAG 3657489 32 100.0 33 TCCACAAAAG ................................ TTCGGTGTTTGTTGCCACCTGAGCACCGAACTT 3657554 32 100.0 34 CACCGAACTT ................................ CAAACCGCATTGTTTTAAACAGTACACCCCGAAC 3657620 32 100.0 34 CACCCCGAAC ................................ GTCAAATTTTTGTTTAACTGCTCCATCACGTAAT 3657686 32 100.0 34 ATCACGTAAT ................................ TCTCTATTCTTTCGGATGCAGTCTGCCTGGAGCA 3657752 32 100.0 35 GCCTGGAGCA ................................ TAGTTATTGTTTCGTGCCCTACATTCCCACCGACG 3657819 32 100.0 33 CCCACCGACG ................................ ATCCAAAAAGTTGCACCTTTGCACCGGACATCA 3657884 32 100.0 CCGGACATCA ................................ TCTATACTAA ========== ====== ====== ====== ========== ================================ 14 32 33 GTTTCAATCCACACACCCGTATAGGGTGTGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [8,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.50,-4.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [534,172] Score: 0.18/0.18 # # Final direction: R [0.55,5.18 Confidence: HIGH] >NC_014935 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 1062730 31 100.0 35 TTTTTTTGCT ............................... TGTCGCCCCGCTTGAGATTGACAAAAGTCTCTGGA 1062796 31 100.0 35 AGTCTCTGGA ............................... CGCCGCCCCACGTCGCTAGGGCGATAACCCAGGCA 1062862 31 100.0 34 AACCCAGGCA ............................... CAGTCTTGGGGTGGTAGAGGTCGCAACTATCCCA 1062927 31 100.0 36 AACTATCCCA ............................... CTTCGTGAGGGAATCCGCTCTGCTCGTGTGCTATGA 1062994 31 100.0 34 TGTGCTATGA ............................... GCTCTCTTTGAAACGGTCTCCACAAATTCCTTCG 1063059 31 100.0 37 AATTCCTTCG ............................... GTCTCATGCTGCCACCTTTTTCTTTTTCTGGATCATC 1063127 31 100.0 34 CTGGATCATC ............................... CACAGAAGAGAAGCTGAAGAGGATCAACCCGCTC 1063192 31 100.0 36 CAACCCGCTC ............................... TTGAAGCGGTCCGCCTCGATGAGTTGGAGAGTAAAC 1063259 31 100.0 37 GAGAGTAAAC ............................... CCGTCAGCGGTTTTGGAGATCTTCCCGTCAGATGTCA 1063327 31 100.0 34 TCAGATGTCA ............................... ACGTCGGCCATTGCGCTCTCGAAATCCATCGCTG 1063392 31 100.0 37 TCCATCGCTG ............................... TCAAGATATGTGGTTTTCAAAACGAAAGCATCCGGAT 1063460 31 100.0 36 GCATCCGGAT ............................... GGTTTTTTCAAATGCTCATGTCCGATAGCTCCAGCC 1063527 31 100.0 35 AGCTCCAGCC ............................... CAGTCTTTTTTGATAGCTCAGAATCTTCTGCTATT 1063593 31 100.0 33 TTCTGCTATT ............................... TCGGGTACCCACAGATCAAGCACGCCCTGGTCA 1063657 31 100.0 35 GCCCTGGTCA ............................... CCTGATGGAAAAGGAGGCGATCGCTTCCAGCCGGG 1063723 31 100.0 36 TCCAGCCGGG ............................... CGGACCCACGAGCAGGAGATCGCGACGATGGGCGCG 1063790 31 100.0 35 GATGGGCGCG ............................... ATTTGGGCCTTCTTCCCCTCGTCGATACCCCCAAT 1063856 31 100.0 35 TACCCCCAAT ............................... TCCGTCACCCTTGGCGACGTTCCCGGCACACTTTG 1063922 31 100.0 35 GCACACTTTG ............................... GATGATGCAGCGCAGGACTTTGCCCACGATCTGAA 1063988 31 100.0 36 ACGATCTGAA ............................... GCCTCGCCAATGTCGCTGGACTCGATATCAACAATG 1064055 31 100.0 35 ATCAACAATG ............................... TTTTGAAGAGCCAAAAGAAGGGGAATATATCGTGA 1064121 31 100.0 34 TATATCGTGA ............................... CCCAGATCGAGCTTGCAAAAAAGATGGGTGTCAG 1064186 31 100.0 34 TGGGTGTCAG ............................... TCAAAGTGAAGGTGTGCCTGTGAGCTTGATCGAA 1064251 31 100.0 36 CTTGATCGAA ............................... CGCTAAAAGCTTTTCGATGAGCTCCTCATGCTGCTT 1064318 31 100.0 35 CATGCTGCTT ............................... CAAAAGAGGCCAGCTCTCCCAGACGTTTGCCCACG 1064384 31 100.0 36 TTTGCCCACG ............................... GGTTGATAGTACGCCCATGCACGGCAAATTCATACC 1064451 31 100.0 36 AATTCATACC ............................... CCGGTCATTTTCCAGAATATTCAAAATCCCAATGAA 1064518 31 96.8 36 TCCCAATGAA ...T........................... TGTGCTGCGTGCACTGTTTGAGGGGAATGCGGTGGA 1064585 31 100.0 36 ATGCGGTGGA ............................... GCCCACACTCTGATCTCTCTGCCATCCTCCTGCCTG 1064652 31 96.8 34 CTCCTGCCTG ....................A.......... ATCCAGATGAAAGGGGCGTTGTATAGCTCCAGGC 1064717 31 96.8 36 AGCTCCAGGC ....C.......................... ATGACAAACAGATAGATCCCATACCTGCGGGCCAGC 1064784 31 100.0 35 GCGGGCCAGC ............................... CCACTCCCTGGTAAAGCTCCTTTACCACCCTGGTT 1064850 31 100.0 35 CACCCTGGTT ............................... GCATTACTTACGTCACTATTCAAGGAAGCAGTATG 1064916 31 100.0 37 AAGCAGTATG ............................... CCGAAGCGATGGCAGAAGCGCGCCTTCTACGAAGGGG 1064984 31 100.0 35 TACGAAGGGG ............................... CTCAAAGGATGAGTCAAAGGTATACGATGAACAGC 1065050 31 100.0 35 GATGAACAGC ............................... CCTCAATTTCTCTTACAATTTCATCGTAAGGGCGA 1065116 31 100.0 36 GTAAGGGCGA ............................... ACGCCGCTTGCCGTTCTTTTTCGATCTGCTCCGGAA 1065183 31 100.0 35 TGCTCCGGAA ............................... TTTTATTGTGCCAAAAGAAAGGCTCTACTGCTGAA 1065249 31 100.0 36 TACTGCTGAA ............................... TGGGAATGTTTTCGTGGACGTCTCCTCCTCGCGGGT 1065316 31 100.0 34 CCTCGCGGGT ............................... TAGCGCATTTCGGCACTACGCGAGTCGATGAGAT 1065381 31 100.0 35 TCGATGAGAT ............................... TCAATTATTTTGTTGACAAGTCCTATTGTAATTTC 1065447 31 100.0 36 TTGTAATTTC ............................... CCGTGTCTATGCCCTTGGGGAGTGGGGCACACTCAA 1065514 31 96.8 35 GCACACTCAA .....A......................... TCTTGACATTCTACAAAAGTAGACGAAGATGTTGT 1065580 31 100.0 36 AAGATGTTGT ............................... TCCGTTGATAGCTTCATCTCACCTTTGGCCGGTGGC 1065647 31 100.0 36 GGCCGGTGGC ............................... TATCGTTGTCGTCTTCATCATATACAGCATATGAGA 1065714 31 100.0 36 GCATATGAGA ............................... ACACTCCTTTTCTCCCAGGTTGACCTACTAGCCAAG 1065781 31 100.0 37 ACTAGCCAAG ............................... AAGTCGTAGGTATGCCACACCGTATCCCCGACTTTGG 1065849 31 100.0 35 CCGACTTTGG ............................... AATTCCCCTACGGCATCTTCTGAATACCAAGATAT 1065915 31 100.0 38 ACCAAGATAT ............................... GCTTTCCAAACTCTTGGAAGTTTCGCATTTCCAAAGCC 1065984 31 100.0 37 TTCCAAAGCC ............................... ATGGTTCCTGCCGCTGGAACATTATTGGACGCTGCAA 1066052 31 100.0 37 GACGCTGCAA ............................... ATTGCATCGAGTGTCTCGATCTCCTTTGGAACATCGA 1066120 31 100.0 35 GGAACATCGA ............................... TTTGGTGCTCTATGGCGGGGCAGGTTCCGGCAAGA 1066186 31 100.0 37 TCCGGCAAGA ............................... ATGTCTATAATAGCCTGGGCGTATTCGCTGATCCCCC 1066254 31 100.0 35 CTGATCCCCC ............................... TTGACGGTGCTTTCATTGTATTATGAAAAAGTCGA 1066320 31 96.8 33 AAAAAGTCGA .....................A......... TATCCAAATCCGAGAGGCGATATCAAGCCTGAT 1066384 31 100.0 37 CAAGCCTGAT ............................... ATTTCTACCTGTTCTATCTGTTTGCATGTGAACAAAT 1066452 31 100.0 35 GTGAACAAAT ............................... GAATAGGCGCGGACCTTGCATTTGCAGTTGTAGCC 1066518 31 100.0 36 AGTTGTAGCC ............................... CTTGCCCCCACACAATCAGGGCAGAGGACAAGACTG 1066585 31 96.8 36 GACAAGACTG ..T............................ ATATCGAGCCAGTAATTTTCAGGTTCGATAATGGGG 1066652 31 93.5 GATAATGGGG ..T...........................C GCCCGTGGC ========== ====== ====== ====== ========== =============================== 60 31 35 ATCATGAAGCAGTCCCTATGGGATTTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.29%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.80,-3.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [141,187] Score: 0/0.18 # # Final direction: F [1.05,0 Confidence: HIGH] >NC_014935 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1482154 36 100.0 30 TTTTTTAATG .................................... TATCTATATGAATATAGCCTTCACCACTAA 1482220 36 100.0 30 TCACCACTAA .................................... TGGTAGCGTCGGACAGATCGACATCAACCG 1482286 36 100.0 30 ACATCAACCG .................................... CCAATTCAGAAAGCACGTTTGGGACGATGT 1482352 36 100.0 31 GGGACGATGT .................................... AAATGGACAGTGGAATATCCCGAAAGACCTG 1482419 36 100.0 30 GAAAGACCTG .................................... ATTTTTCTCTCTTTTTGCCTCCCTCTCCCT 1482485 36 100.0 30 CCCTCTCCCT .................................... TGTATTGTTAAAGATTGACACTCCTGAACT 1482551 36 100.0 30 CTCCTGAACT .................................... CAAGATTAAACGACTTAAAAAAGACATCCT 1482617 36 100.0 30 AAGACATCCT .................................... TGATCTCCTGGATCTTGCGGTCGGTGTCGT 1482683 36 100.0 30 TCGGTGTCGT .................................... CAGGGCTTTCGACATTGCCTGTAAATACTT 1482749 36 100.0 30 GTAAATACTT .................................... GACCCGGTGCGGCTTTTCGCTTGAAGTTTT 1482815 36 100.0 TTGAAGTTTT .................................... CCTCAAAAGT ========== ====== ====== ====== ========== ==================================== 11 36 30 GTTTTAAGACCCCTCAAAACCCCACCCTGTTACAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [224,127] Score: 0/0.18 # # Final direction: F [0.27,0 Confidence: MEDIUM] >NC_014957 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 47067 37 100.0 36 GGACGACTCC ..................................... GCTTTGAGCTTGGCTTCACGCCGCCCTCCCGCGGCG 47140 37 100.0 37 TCCCGCGGCG ..................................... AAGATCGCGTTTTGCGATCCTTGACGTCCTCTCCAGC 47214 37 100.0 36 CCTCTCCAGC ..................................... GAGAGGACGCGGTTGGACGTTGACACGATCAGCCAT 47287 37 100.0 36 GATCAGCCAT ..................................... GACGCGGTTGTTGAGGAAAACGCGCGCTGAGGGGAA 47360 37 100.0 36 CTGAGGGGAA ..................................... AGGGGTGAGGCGTTGCCGCCGCCGCCCAATAAGGAT 47433 37 100.0 36 CAATAAGGAT ..................................... TAGTAAGGAATCGCAAGAAGTTCCTTGAGTTCATCG 47506 37 100.0 35 GAGTTCATCG ..................................... TGACCTCATCGCAAACACGAGAATTGTTCCACGAC 47578 37 100.0 37 GTTCCACGAC ..................................... CAGGGTGACTAGAGAGCGCCCCCTCAGCGAAAGGGAG 47652 37 100.0 35 CGAAAGGGAG ..................................... CGGGAGAGGTACCCCGAACTGGCGGACGCGCCAGT 47724 37 100.0 36 ACGCGCCAGT ..................................... TCCGAAGGCGGAAATAAAAATACACCAGCAGGTTCC 47797 37 100.0 39 AGCAGGTTCC ..................................... CCCCTCCGATGGGAGCCCGTGCTCCTCCAGCACGGACGC 47873 37 100.0 36 GCACGGACGC ..................................... GCGAGCCCGCATCCTCGACCATATCGGCGAAGATGC 47946 37 100.0 37 GCGAAGATGC ..................................... GTTGAGTATCGCAGCGGATGCGATGTCCAGATTTTTA 48020 37 100.0 38 CAGATTTTTA ..................................... TCGAAGTCGGGCCAGCGACTCTTCTTAGGGATCCGCCT 48095 37 100.0 37 GGATCCGCCT ..................................... TGGGTGGTGATTCACTGGGCAATGACCGATCAATTCT 48169 37 100.0 35 GATCAATTCT ..................................... GTCCACATTGATGAAGTCCGCCACCTCTTGGGCGG 48241 37 100.0 35 TCTTGGGCGG ..................................... CCGCGGGGCGCCGCCTCTAAAAACTCGATGGCGTA 48313 37 100.0 34 CGATGGCGTA ..................................... CATCCTTGTAGCTCGCAGGACCAGACGCCGTATC 48384 37 100.0 36 ACGCCGTATC ..................................... AACTCAATCGCATAGTACCTGTTGCACAGGGCGGCC 48457 37 100.0 39 CAGGGCGGCC ..................................... ATCCTCATGCGGATGTCGAAATGGCTTCGGGTTCCACCG 48533 37 100.0 36 GGTTCCACCG ..................................... CGTGTGCGATCCTCGCGTTCCTGCCCACATTTCCAA 48606 37 100.0 37 ACATTTCCAA ..................................... GCCCGATTCCATCGCCGACGGACAACAACAGGAGCGT 48680 37 100.0 36 ACAGGAGCGT ..................................... GGGGTAGCGTCCCCGAAGCCACTCAACGGCGCCGGG 48753 37 100.0 35 CGGCGCCGGG ..................................... GCTCCGGCCGCGTCCATCTCCGCGGCATCGTATTC 48825 37 100.0 37 CATCGTATTC ..................................... TGCCGCAGGTCGAACATGCTACGCAACGGCTCAAGGG 48899 37 100.0 37 GGCTCAAGGG ..................................... TGGTTAGAGCACGTGTCGCCCGTCCACCATCACTGGC 48973 37 100.0 38 CATCACTGGC ..................................... GAAGAACGCGCGCTGCATCGGAGGATCATCTCTTCATG 49048 37 100.0 37 TCTCTTCATG ..................................... GGCGGTCGAGAAGTTTCGGCTGCCGTCGGCCCGATCG 49122 37 97.3 37 GGCCCGATCG .........T........................... GGGGTATGGCGGCCCTCGCTTTCCTCGCGTGAGCCTG 49196 37 94.6 CGTGAGCCTG .........................A.........G. AAGTTCGC ========== ====== ====== ====== ========== ===================================== 30 37 36 GTTCCGCACCCCTCCGGGGGTGCGGCACCATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [6,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-16.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [43.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [417,307] Score: 0/0.18 # # Final direction: F [5.28,0.27 Confidence: HIGH] >NC_014960 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 3137389 30 100.0 60 NNNNNNNNNN ACGGGG........G............... GTGCTGGCTCGGCAGGCTCGCCAACCGCCTTTTGCCAGAGTTTCAGCCGCGCCCCCCGAA 3137479 30 100.0 44 NNNNNNNNNN CGGGGG........................ GTGCAACGCGAAGCAATTTGTTTAAGAGTTGCATGAAATATTCA 3137553 30 100.0 60 NNNNNNNNNN .............................. GTGCTGGCTCGGCAAGCTCGCCAACCGCCTTTTGCCAGAGTTTCAGCCGCGCCCCCCGAA 3137643 30 100.0 44 NNNNNNNNNN CGGGGG........................ GTGCAACCCCGGCGGGGGCGTGGATTGAAAGCGACAAAAAAAAC 3137717 30 100.0 43 NNNNNNNNNN .............................. GTGCAACCGACGGAACAAAGGAAATCCCTGCGGCGGAAATCAA 3137790 30 100.0 43 NNNNNNNNNN .............................. GTGCAACGACTGAACCGATTTGCCATCGGCTCAGTCAGAATGC 3137863 30 100.0 44 NNNNNNNNNN .............................. GTGCAACTCCCCCAGGCGTGCCACCTGGGGGGGGGCGTGACAAA 3137937 30 100.0 43 NNNNNNNNNN .............................. GTGCAACGTTTGGCGGGGATTTCCTTCGCGCCATCGAGGACGA 3138010 30 100.0 44 NNNNNNNNNN .............................. GTGCAACTATGTGTAAAAGAAAATCCACTGAGTAATCAACTCAG 3138084 30 100.0 49 NNNNNNNNNN .............................. GTGCAACGCCGTAGTGGCGTGGGTGACAGCCGCCATTGAATTCGTACTG 3138163 30 100.0 42 NNNNNNNNNN .............................. GTGCAACTGAGTGTGTGTTCCGTGTCTATCTCCCTTGAGCAT 3138235 30 100.0 42 NNNNNNNNNN .............................. GTGCAACAGCCTCCCGGCAATGGTAGCACAGCGCCTTTTCCT 3138307 30 100.0 43 NNNNNNNNNN .............................. GTGCAACGGTTTGTATCCGCGCCAATCACAACTTGGAGTTCAG 3138380 30 100.0 44 NNNNNNNNNN .............................. GTGCAACCCGTGACGACGATGCCGTCGTTTTCACTGAGCTGACC 3138454 30 100.0 45 NNNNNNNNNN .............................. GTGCAACTCAACTCCTGTTTCGCAGTACTCAGCCGTTTTTTTTTG 3138529 30 100.0 42 NNNNNNNNNN .............................. GTGCAACACAGGTAGGATTTCAAGCCCCTCACGCAGCAGAGG 3138601 30 100.0 42 NNNNNNNNNN .............................. GTGCAACACCATGCCCTGATTGCATCAAAAAATCATCTTTCC 3138673 30 100.0 44 NNNNNNNNNN .............................. GTGCAACGGAGACTAAGGCTGTCGACTGGGCATGGCATCTCAGC 3138747 30 100.0 42 NNNNNNNNNN .............................. GTGCAACAAAGAGCTGCTGACCTGTATCGCGTTGAACAAGCG 3138819 30 100.0 42 NNNNNNNNNN .............................. GTGCAACGCTTTGTGTTACCACTGCAGGGAGGCTCATTATGT 3138891 30 100.0 43 NNNNNNNNNN .............................. GTGCAACGGTCAGAACAAAAGATGACCTGAAGAAAGCCGCTGT 3138964 30 100.0 44 NNNNNNNNNN .............................. GTGCAACACATCACTGTTTCAATGCCCTCCCCCGCGTCGAGGGG 3139038 30 100.0 45 NNNNNNNNNN .............................. GTGCAACCCAGCAATAAGAGTGGCACTTGTCGCACCAGCCGTCAT 3139113 30 100.0 43 NNNNNNNNNN .............................. GTGCAACCTGCGAGCGCAGGAGGACCTGTTGTACGCCAAAAAA 3139186 30 100.0 42 NNNNNNNNNN .............................. GTGCAACGCAATTCCAATTGAGTTCAAATAGGAGGTGAATTA 3139258 30 100.0 46 NNNNNNNNNN .............................. GTGCAACAAGTCGAGGGATTCCTGAGTGAAATCCCGCCAGTTCTTG 3139334 30 100.0 43 NNNNNNNNNN .............................. GTGCAACTGATAAACAAGCAGAAGATTTACACTGTGACCGAGT 3139407 30 100.0 43 NNNNNNNNNN .............................. GTGCAACGGAACTGCTGGAGGATGACGATGTCATCCTCTTGGA 3139480 30 100.0 45 NNNNNNNNNN .............................. GTGCAACCTTGCCCTGGGCAAGCATGCCCTATTCGTGATTAGACC 3139555 30 100.0 45 NNNNNNNNNN .............................. GTGCAACATTACGGTCGCACGGATTTCAGCAATCCGCGATGATGA 3139630 30 100.0 42 NNNNNNNNNN .............................. GTGCAACCTGTGCTTTACCCTGACCGTTCATACACCTCGCCT 3139702 30 100.0 43 NNNNNNNNNN .............................. GTGCAACTCTACAGCATCTGCGTAACGCAGCGAGACCTCCGGT 3139775 30 100.0 42 NNNNNNNNNN .............................. GTGCAACTTTCCGTCATACTGGGGAAATCCTCCCCAGTATGA 3139847 30 100.0 44 NNNNNNNNNN .............................. GTGCAACACAACGCCAGTTGTCCCTTCACTGGGACAACTGCAGG 3139921 30 100.0 44 NNNNNNNNNN .............................. GTGCAACTGTGTTCCGTCAAATGGGGTAACTGCCTCCAGATAGA 3139995 30 100.0 43 NNNNNNNNNN .............................. GTGCAACTTTTGTATCGCGCGCGCTTCAAGCTGTTGACCAACC 3140068 30 100.0 42 NNNNNNNNNN .............................. GTGCAACAACGAAGAGAAGGAATATCACGATAAACATCATCA 3140140 30 100.0 44 NNNNNNNNNN .............................. GTGCAACAGAATGCGCAGTACGTAGAGCAGGCGAAAGCTGCAAT 3140214 30 100.0 44 NNNNNNNNNN .............................. GTGCAACCGATGCGATGGCAGCGGGAGAATCAATCAAGCTCAAG 3140288 30 100.0 43 NNNNNNNNNN .............................. GTGCAACCCAAGAGGTGGTCACTGTTTGCGGACGGGCCTAGGA 3140361 30 100.0 43 NNNNNNNNNN .............................. GTGCAACGACGTAAGAGCGAAACGGGCTGGTACGAAGTAGAAG 3140434 30 100.0 43 NNNNNNNNNN .............................. GTGCAACTGGAACGCTTCCAATCCTGGAGAGGGCTTGGCCCTC 3140507 30 100.0 42 NNNNNNNNNN .............................. GTGCAACCCTGCGAGCGCAGGAGGACCTGCTGTCCAAAAAAG 3140579 30 100.0 44 NNNNNNNNNN .............................. GTGCAACCAAGGTTACACAGTTGAAAAGAAAAAAGGAGGAAAAA 3140653 30 100.0 45 NNNNNNNNNN .............................. GTGCAACAGCGGATATATCGGGGAGGGCGCGGCCCTGTCATTTGT 3140728 30 100.0 43 NNNNNNNNNN .............................. GTGCAACATTCGCCGATGTTGATAAACCTGAAGGTACAAACTG 3140801 30 100.0 44 NNNNNNNNNN .............................. GTGCAACTGGTACGAGGTTGCGGAAGACCAGCAGGAAGACCAGC 3140875 30 100.0 43 NNNNNNNNNN .............................. GTGCAACATTGGGATCAGTGCAGATGTCTATAGACCTCTACGT 3140948 30 100.0 44 NNNNNNNNNN .............................. GTGCAACAGGTGGCTCATAAGACACGTATTATCAAATCTTTAGA 3141022 30 100.0 42 NNNNNNNNNN .............................. GTGCAACATGAAAGAGTTAAGTACTGAAGTTGTTCCTGAATT 3141094 30 100.0 43 NNNNNNNNNN .............................. GTGCAACCCCATGATCTACTGCTCGCCGCGAATCATCAAAGAG 3141167 30 100.0 43 NNNNNNNNNN .............................. GTGCAACTTGACGCGCGTTGACAACTCCGCAATCTGACGTTGC 3141240 30 100.0 42 NNNNNNNNNN .............................. GTGCAACACTGGTACATCTGGCAGAAGACCAACACAACGAAC 3141312 30 100.0 42 NNNNNNNNNN .............................. GTGCAACTCAGACATGAGAATTTAGGTGGTACTGTGGTCGCT 3141384 30 100.0 43 NNNNNNNNNN .............................. GTGCAACCATATAACCCAAAGCATGGTAACAAAGTCGAGGTGA 3141457 30 100.0 42 NNNNNNNNNN .............................. GTGCAACGTTTTTTCAGAAACATCCCCCTTACCGTGTCGAGG 3141529 30 100.0 45 NNNNNNNNNN .............................. GTGCAACTGTCGTTGCAGTGAGAGATTAGAGACGCGCTCTTCCGC 3141604 30 100.0 44 NNNNNNNNNN .............................. GTGCAACCACCGGGATTGATCATGAAAGACGATTACAACAATAT 3141678 30 100.0 42 NNNNNNNNNN .............................. GTGCAACAAGCTCCTCTCGCAGGAGAATTTCGGTAGCACTGA 3141750 30 100.0 43 NNNNNNNNNN .............................. GTGCAACCCGGTATTTGCGGTGCGAAAGCACGAGCACCAGTCT 3141823 30 100.0 45 NNNNNNNNNN .............................. GTGCAACGGAGCATTTCGGCGCTACAGAAGGCCGTGAGCTGAAAG 3141898 30 100.0 42 NNNNNNNNNN .............................. GTGCAACAGCCGATAGGCACTTTTTTGAATTTGATATCCTCA 3141970 30 100.0 42 NNNNNNNNNN .............................. GTGCAACAGCCAATCTGGTAAAGACGCTGTCTACCAGAGTGA 3142042 30 100.0 44 NNNNNNNNNN .............................. GTGCAACGCAAAGCGGCTTTGTGGAATTCTCTGCGCTCAGAGAG 3142116 30 100.0 44 NNNNNNNNNN .............................. GTGCAACAAGGAAATCAAAAAATTTGCCCGTGACTACAATGAGG 3142190 30 100.0 43 NNNNNNNNNN .............................. GTGCAACCTGCCCATGCCCGACGACGCAGTCGTCGTCCTTGAC 3142263 30 100.0 43 NNNNNNNNNN .............................. GTGCAACAGGTCTGGGGCGTTTATGACCGTCTTGACCCTGGAG 3142336 30 100.0 43 NNNNNNNNNN .............................. GTGCAACCTTACTGGTATGCGCAGTCGCCGCTGGTTACCTTCG 3142409 30 100.0 42 NNNNNNNNNN .............................. GTGCAACAAAAGGCGGGATGAAAACCCGCCTGGATAGTGGAA 3142481 30 100.0 43 NNNNNNNNNN .............................. GTGCAACTAATCCACATCCCCAGGTTCGAAGCAAACACCTTAT 3142554 30 100.0 43 NNNNNNNNNN .............................. GTGCAACAGCGCGCGTTTTTCCGCAGGTACTTTGCCTACACCC 3142627 30 100.0 43 NNNNNNNNNN .............................. GTGCAACTTTTAGGGTCGGCAGTGTCCGGCTCGTCGAGAAAGA 3142700 30 100.0 42 NNNNNNNNNN .............................. GTGCAACGCCCGGCAAAGCGAGTGACGCTAATTTCCGTAATG 3142772 30 100.0 44 NNNNNNNNNN .............................. GTGCAACGAAAGGGGCGCCCCGTGTTCATCGCTGGAACCCTCAA 3142846 30 100.0 45 NNNNNNNNNN .............................. GTGCAACAATGCCCATTCTTTTTCTTCCTCAACGTAAGCCAGCAA 3142921 30 100.0 46 NNNNNNNNNN .............................. GTGCAACCTTGTGTAATGGTAAGGGATGTAATCGGGGCAATCAAAA 3142997 30 100.0 44 NNNNNNNNNN .............................. GTGCAACTAAGCCGGTCAAGGCGAAAATCACTGAGGGTTTATGG 3143071 30 100.0 42 NNNNNNNNNN .............................. GTGCAACTGTCGAGGTCGGAACTCTGGACGATGTGCGACGAT 3143143 30 100.0 43 NNNNNNNNNN .............................. GTGCAACGGTTCGGGACCGGGTTCATGCTGATGCGTCCTCGAT 3143216 30 100.0 44 NNNNNNNNNN .............................. GTGCAACAGGTCCCGCCGAATCCGGCTTGACGTTTCTTGATGAT 3143290 30 100.0 45 NNNNNNNNNN .............................. GTGCAACCTGCAGCAGTTCCAAATCCAGAACTGCTGCTAGCAAGT 3143365 30 100.0 42 NNNNNNNNNN .............................. GTGCAACGCGGCAAGGAAGTTGCCGTCATACTTTGAGGAATA 3143437 30 100.0 42 NNNNNNNNNN .............................. GTGCAACGTCGTGATTTTGGACGGTATCGAGGTCGGCACGGT 3143509 30 100.0 42 NNNNNNNNNN .............................. GTGCAACCCATGTCAGGTACCGTAGTACACAAAACTGAAATT 3143581 30 100.0 43 NNNNNNNNNN .............................. GTGCAACAGTGTAGGGCGCCCTCACTCATTCTGACATGTCTTG 3143654 30 100.0 43 NNNNNNNNNN .............................. GTGCAACGGCTTACGCTTATGCGTCAACAGTGTCCGTTCCGTT 3143727 30 100.0 43 NNNNNNNNNN .............................. GTGCAACTGAAATCGTTAATTTGATGAGAATCAACAAAACAAT 3143800 30 100.0 43 NNNNNNNNNN .............................. GTGCAACTAGATAATTACGTAGGCTGGCAACTCTGGCGGAATA 3143873 30 100.0 43 NNNNNNNNNN .............................. GTGCAACCTTGAAAGGCTTCAGTCAGTACGGGATCGAACTGAC 3143946 30 100.0 44 NNNNNNNNNN .............................. GTGCAACGACGGCATAGAGGATGATTCTGCCGTAATTAGAAAAA 3144020 30 100.0 43 NNNNNNNNNN .............................. GTGCAACCCAGAGGGGTCGACAACGTTATTACAGACTCTTCAA 3144093 30 100.0 43 NNNNNNNNNN .............................. ATGCAACACTGAGCTCGCTCTCCGGAACACCGAATTTAGCACT 3144166 30 100.0 43 NNNNNNNNNN .............................. ATGCAACGGGTAATAGAGAGGATTGCCCTTAATCTCGAATATC 3144239 30 100.0 44 NNNNNNNNNN .............................. ATGCAACCGTAGGGGGTATCGTGTATTACAAGTTGTTGAGGATG 3144313 30 100.0 43 NNNNNNNNNN .............................. ATGCAACGTGAAACGTATCGGGTTTGATTTACCTGTTTTCGGT 3144386 30 100.0 42 NNNNNNNNNN .............................. ATGCAACTGCCTCAGCAATGGTGCGACTACGATGCCGAGAAG 3144458 30 100.0 44 NNNNNNNNNN .............................. ATGCAACTACAAATCCGTCAAGAATTTGACTTCATCGCACAGGT 3144532 30 100.0 43 NNNNNNNNNN .............................. ATGCAACTCCTGGCGATTTTCAAAGACGAAGCCGAGTGCCGCG 3144605 30 100.0 44 NNNNNNNNNN .............................. ATGCAACGGGAACAAGGAACGCGAAACTGCGTACAAATTTCTGA 3144679 30 100.0 44 NNNNNNNNNN .............................. ATGCAACTCCAAAAAAACAGCAATTGCTACCGTGAAAGTTAAAG 3144753 30 100.0 43 NNNNNNNNNN .............................. ATGCAACCTGATGGGACTTCCTGGCATCGGACTGGAGCGGGCG 3144826 30 100.0 47 NNNNNNNNNN .............................. ATGCAACGTCGCAGCACTAGTAAAACTCGGCGAAGCGTTCGCCGCGG 3144903 30 100.0 42 NNNNNNNNNN .............................. ATGCAACTCGTCCCCAAAACACTTGACAATTAGTACCGTATG 3144975 30 100.0 41 NNNNNNNNNN .............................. ATGCAACACGGTTGCCACAGAGCAACCGCATGCAAGTTGCT 3145046 30 100.0 44 NNNNNNNNNN .............................. ATGCAACAATGGGCATCAATTGTCCTGCCCAGCATCCGCGATCT 3145120 30 100.0 42 NNNNNNNNNN .............................. ATGCAACGCCAACGCCTTTTTCAAGTACGCAGAACCACGATG 3145192 30 100.0 42 NNNNNNNNNN .............................. ATGCAACGTCAGCACCTTAAAAATCTGATAGACTAGAAAGGA 3145264 30 100.0 43 NNNNNNNNNN .............................. ATGCAACCCTGTCCAGAGAGTCGAGCATCCAGCACCTCGCGAA 3145337 30 100.0 44 NNNNNNNNNN .............................. ATGCAACATATTGTTGCTTCCGCCGCCAGCGCCCTCGGACGTCT 3145411 30 100.0 42 NNNNNNNNNN .............................. ATGCAACAGAGATTGCCCCCCTACCAGAAGAGGGGGAAAGAT 3145483 30 100.0 44 NNNNNNNNNN .............................. ATGCAACTTGGCCTTCCTGGTCGGTGACGGCAACACTAAACGTC 3145557 30 100.0 44 NNNNNNNNNN .............................. ATGCAACTGCTTACCTACTTCTTCACGCCTGTCCCACGAGAGTA 3145631 30 100.0 43 NNNNNNNNNN .............................. ATGCAACGTTCCTCCGCTACCCGAACACGTGGAACCCAAAACA 3145704 30 100.0 42 NNNNNNNNNN .............................. ATGCAACCTCGGCGGAGGGCGCGCGGTTTACACTGGACCAAT 3145776 30 100.0 43 NNNNNNNNNN .............................. ATGCAACTGGAGTGGCTCTATGGCGAGTATGACGCTATACAGA 3145849 30 100.0 42 NNNNNNNNNN .............................. ATGCAACGAGATTACTCCCTTCTCGCAAATTTTCGAGATTAA 3145921 30 100.0 44 NNNNNNNNNN .............................. ATGCAACATCGGAGGTCCACCCTGTCAGGCGCACAGCCGTTTAG 3145995 30 100.0 43 NNNNNNNNNN .............................. ATGCAACGAATTTGCGCGGTGTGTAGAGGAAGCCCAACCCGAA 3146068 30 100.0 45 NNNNNNNNNN .............................. ATGCAACTACCCCAATATCGCTTACCCACGAGCGGGCGAACTTTG 3146143 30 100.0 43 NNNNNNNNNN .............................. ATGCAACCAAATCGCACCTTCAAAAAGACCTGTGTTGGAAAAA 3146216 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 121 30 43 GTTTCAGTATCCACTAACGGATCGAGGGGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [7,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-3.20,-3.20] Score: 0/0.37 # Array degeneracy analysis suggestion: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [393,158] Score: 0.18/0.18 # # Final direction: R [0.18,0.41 Confidence: MEDIUM] >NC_014960 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1369172 32 100.0 35 NNNNNNNNNN A.A.TT.......................... CATATAGGCCCACCCACCCCCTTTCAATCTTCGAG 1369239 32 100.0 34 NNNNNNNNNN ................................ TCATTTCAATCTCCTTTCTAGTTCTTCATAAAGA 1369305 32 100.0 31 NNNNNNNNNN ................................ ATGTTTTCCCTCCCTGATTGATCAGATTCCA 1369368 32 100.0 38 NNNNNNNNNN ................................ ACTCAGTATTCCGACTGGTGAGATACCGCCACAGGGCT 1369438 32 100.0 33 NNNNNNNNNN ................................ ATTATTGCACCATTATTTGCTGACATCTGTCGT 1369503 32 100.0 34 NNNNNNNNNN ................................ TTTGCTTTTGCTGCGGCTTTCATCAGCGATTCCC 1369569 32 100.0 36 NNNNNNNNNN ................................ CCCGAAGAGCCGAAATACACGCCGGAGCAAATCTAC 1369637 32 100.0 35 NNNNNNNNNN ................................ AAGCAGATAGCAGGAGGATGAATGGCAACGGTAGA 1369704 32 100.0 35 NNNNNNNNNN ................................ GCAACGAATCAATCCGCGCCACCGGCGGCGCATTA 1369771 32 100.0 35 NNNNNNNNNN ................................ GTGGAGCGTGAAGAGGGTGCGGATTCGGTGACCGT 1369838 32 100.0 33 NNNNNNNNNN ................................ TACATGAGTTGGTACAACCAGTTGCCGTTACCC 1369903 32 100.0 34 NNNNNNNNNN ................................ CGTGTACTCTAACCAGCGCACCGCCGCCACCTTT 1369969 32 100.0 34 NNNNNNNNNN ................................ ACCCGGAAGGTTTCACCGCCGCCAGGAGTGCGTT 1370035 32 100.0 33 NNNNNNNNNN ................................ TGTAGAGTGCTGGAATTGTGCACCTTTCAAAGT 1370100 32 100.0 34 NNNNNNNNNN ................................ ACGATAGAGAAAAACTGATTGTTTTTGAAAAGGA 1370166 32 100.0 33 NNNNNNNNNN ................................ AATCGTTATCGTGCCGTTGTCCGTTCTCATGAA 1370231 32 100.0 33 NNNNNNNNNN ................................ GATGATCATTGGCTCAATTGTCCGCTACATGCG 1370296 32 100.0 33 NNNNNNNNNN ................................ ATTTTTCCTCCATTTCATCAGTTCCTGATAGAG 1370361 32 100.0 34 NNNNNNNNNN ................................ AAGCCGCAACGCGCCTCGCGCCCGCCCGTTCCAA 1370427 32 100.0 34 NNNNNNNNNN ................................ ATTACCACCATGCGCAGCCGGACTGAGTATGTGC 1370493 32 100.0 35 NNNNNNNNNN ................................ GTACACCGCGCGCAATTATTCCACTTCCATCCCAT 1370560 32 100.0 33 NNNNNNNNNN ................................ GCAAGTGTTGATTCGTTCATTTCATTTCTCCTC 1370625 32 100.0 34 NNNNNNNNNN ................................ AAGGCCGTGGCTCATACGATTACGAAGCCATAGC 1370691 32 100.0 37 NNNNNNNNNN ................................ TCCTTTAGAATCTTCAAAATCTCTTGTACATCTTCCT 1370760 32 100.0 36 NNNNNNNNNN ................................ ATAGAATGGAGGATATTAGAGCAATTACCAATCACT 1370828 32 100.0 35 NNNNNNNNNN ................................ TGAGAGATTCATGATGTCATGCTTACTGGTGGTAT 1370895 32 100.0 35 NNNNNNNNNN ................................ GGATTGCTCCCGTCAGGAACAAGATTACAGAATTT 1370962 32 100.0 34 NNNNNNNNNN ................................ GCGAATATTACGCCATGAGCCTTTAGCGTTTGGT 1371028 32 100.0 35 NNNNNNNNNN ................................ GCGCATAATACTCGCCATTAGTCATCTCCTCGACA 1371095 32 100.0 33 NNNNNNNNNN ................................ CGGCTGGCGGCTGAAAAATACGGCAGATTATTT 1371160 32 100.0 34 NNNNNNNNNN ................................ CCTGATTGAGTTTGACCAGTTGGAAACGTTTACG 1371226 32 100.0 36 NNNNNNNNNN ................................ ATCCCTTTTCGCGCCCAGCCTGGTGCCAATCACTTT 1371294 32 100.0 35 NNNNNNNNNN ................................ TGTACTCGTATTGTTGCGCTGGCTTATACGTCACT 1371361 32 100.0 35 NNNNNNNNNN ................................ TTGCGCAATAACCCGCATAATCCCGGCCGAACCGG 1371428 32 100.0 34 NNNNNNNNNN ................................ GGGGGAAAAATTGCAGTCATTGACACTGAGCGCG 1371494 32 100.0 33 NNNNNNNNNN ................................ CAAAAAGCGTTGGCAAAGTTTGAGTTGTCCGTT 1371559 32 100.0 36 NNNNNNNNNN ................................ TGCCCGCATCATGAATCCTGATGCCTTCCGTGCGCT 1371627 32 100.0 39 NNNNNNNNNN ................................ GCCGGTGTAAGCCTTTCCGTTATGATCCGGACTGAGCAT 1371698 32 100.0 35 NNNNNNNNNN ................................ TATGAGTGATGTTCTACCTTTGGATTTGCAGAACG 1371765 32 100.0 34 NNNNNNNNNN ................................ TGCGGTTGCGCTATCAAGTAAACGGCTTATCAGG 1371831 32 100.0 36 NNNNNNNNNN ................................ GAGAATAATCAACCATTTCTATCACACACTCTGGAA 1371899 32 100.0 34 NNNNNNNNNN ................................ TGAAGGTTATGCAGCGGTGTTCAATCAGTGGAGT 1371965 32 100.0 34 NNNNNNNNNN ................................ TGCTTTGCTACGAGTTTCTCTCCGCCCTCCGCAA 1372031 32 100.0 34 NNNNNNNNNN ................................ AGATGACGCTCAACCCCAGCGCGGTCTGCTTCAG 1372097 32 100.0 35 NNNNNNNNNN ................................ CGTAAGCCTCGCGTGACGCAAAAGCATCCACGTAA 1372164 32 100.0 35 NNNNNNNNNN ................................ ACCGTCCGGGAGCGGATTCAGTTCTTCCAGTTCAC 1372231 32 100.0 34 NNNNNNNNNN ................................ AGTATTGGTGATTGACTCCCTCTCTCATGCATGG 1372297 32 100.0 35 NNNNNNNNNN ................................ TGTACTAATACAAACCCTGGCTCTGCATTGTTGCC 1372364 32 100.0 34 NNNNNNNNNN ................................ CTCGTTCATATTATGTTCCTCCCGTTTACTCAAA 1372430 32 100.0 34 NNNNNNNNNN ................................ AAGCGTGTATAAACACCTGGCGCGCCATTACGAA 1372496 32 100.0 33 NNNNNNNNNN ................................ GTCGAGATCAGCAATCATGTGCGGAGGAACGCG 1372561 32 100.0 34 NNNNNNNNNN ................................ AAACCGACCGCTGGTATGAGCAGGACGGGCAGAT 1372627 32 100.0 35 NNNNNNNNNN ................................ CTTCAATGCGCACAAGGCTGGCTTTGATGTCACTC 1372694 32 100.0 35 NNNNNNNNNN ................................ TCAACTTCTCCAGCTCTTTCATCGGCGCGCTCATG 1372761 32 100.0 33 NNNNNNNNNN ................................ TATGACGGATGAGCAATGGCAAAGGCACAAAGT 1372826 32 100.0 33 NNNNNNNNNN ................................ GTGAAGTTTATAAACTCCGTACTTTGCAGTTTG 1372891 32 100.0 34 NNNNNNNNNN ................................ GGAGGTGCAGAGTGACTTATCATCCGGTGAGCCT 1372957 32 100.0 35 NNNNNNNNNN ................................ TATCCATGATTCCAGCGCTCACCAATTGCACAACA 1373024 32 100.0 36 NNNNNNNNNN ................................ TCACCTTATACCCGCACGTGCCAGAGAAAAATAACG 1373092 32 100.0 37 NNNNNNNNNN ................................ TTTCTGGAACCCAACCTCATAGAAGTAGAGTTGACCA 1373161 32 100.0 33 NNNNNNNNNN ................................ ACGGGGCAATCATTGACGAGTTGCATGCTCATA 1373226 32 100.0 34 NNNNNNNNNN ................................ GGCGCGCGGTTCTCGTCGTCAGCCGTTGCAATTT 1373292 32 100.0 34 NNNNNNNNNN ................................ GTACCGCCTCCAACACTTCGCCGAATTTCGTCTA 1373358 32 100.0 34 NNNNNNNNNN ................................ AGGCGGTTATTTCATCCCGCAAAACCTTTATGGT 1373424 32 100.0 34 NNNNNNNNNN ................................ GTTCATGCCTTCACCTTGACATTCTCCCCAAAGA 1373490 32 100.0 34 NNNNNNNNNN ................................ AACAATCTGCCGATGTTGTCGAATATACTGCGCC 1373556 32 100.0 34 NNNNNNNNNN ................................ AGAGCAACGGGTGATGTATTATAAGCAGGTGTGC 1373622 32 100.0 31 NNNNNNNNNN ................................ TCTTACTCCAGCACTGGCGTATCAGTCACTT 1373685 32 100.0 34 NNNNNNNNNN ................................ TCGAGTTCGTTGGGTCGAACAAATGTCAGTTCTT 1373751 32 100.0 34 NNNNNNNNNN ................................ TTCACCAGATCGCGGTGTTCCAGCCAGTCCTGCG 1373817 32 100.0 34 NNNNNNNNNN ................................ GCGCCAGTTTGCGTCATACCCACGGGATGCAGCA 1373883 32 100.0 35 NNNNNNNNNN ................................ CATACTGAGTATTCGGCAGAGTGATTTTGATACGC 1373950 32 100.0 36 NNNNNNNNNN ................................ CCTCGAACCGCCACCTACGGTGACATCATGGTCTGG 1374018 32 100.0 35 NNNNNNNNNN ................................ AACCTGATAGCGGTCGTCTTCTGCTTCCGGAGGGA 1374085 32 100.0 35 NNNNNNNNNN ................................ AGCCCAAGACTTACCAAGAGCCTGAGACATCGGAT 1374152 32 100.0 35 NNNNNNNNNN ................................ GACCTGCCCATACTGTCAGTCAATGGACGGGAAAA 1374219 32 100.0 32 NNNNNNNNNN ................................ CCTGATAGCGGTCGTCTTCTGCTTCCGGAGGG 1374283 32 100.0 35 NNNNNNNNNN ................................ ATCGAATTGCTCGCGTCCGCATATCTTGCAGACGT 1374350 32 100.0 35 NNNNNNNNNN ................................ TCTTGCGGCTGTGACACGACTTGCATAATGGTTGT 1374417 32 100.0 32 NNNNNNNNNN ................................ GTACTTCACTGCAGGCTCAACCCAGGCCGTCA 1374481 32 100.0 31 NNNNNNNNNN ................................ ATTTCATCGCCGGTTTCAAAGTCAACGCAAG 1374544 32 100.0 35 NNNNNNNNNN ................................ GTGATGTTGATCAGATGTCGTTTGGCTTTGCAGTC 1374611 32 100.0 35 NNNNNNNNNN ................................ GTTGTATGCCCGCAAGGATGCAACCGACCAGTTGA 1374678 32 100.0 35 NNNNNNNNNN ................................ CAGCGAGCGCGATGCTGCTTTGCTCATTGTTCTTG 1374745 32 100.0 35 NNNNNNNNNN ................................ GCGCAGAGTACTGCGCATGACGAATCAGTACGGGT 1374812 32 100.0 34 NNNNNNNNNN ................................ CAAGGCGGCACGGGCGCTGCTGCGGTTGTATCGA 1374878 32 100.0 35 NNNNNNNNNN ................................ GGTGTGACGCGAAGGATTTTTATCGTTGGGTTGAT 1374945 32 100.0 35 NNNNNNNNNN ................................ CTCAGGTCGGAAGCGGCCAATTTGCGCAAACGGTT 1375012 32 100.0 35 NNNNNNNNNN ................................ TTGGGGAGGTGTTTCGATTTTCGGTTTTGTTATCA 1375079 32 100.0 34 NNNNNNNNNN ................................ CACTCCTGCTTGCGCTTGTCGTTCCAGCCGAACG 1375145 32 100.0 34 NNNNNNNNNN ................................ GAAACACACCTCCGGTCAGATCAATCCAGCGCGC 1375211 32 100.0 37 NNNNNNNNNN ................................ GCGCTAACCCGTAAATTACCGCTCCAAACCAATCGGA 1375280 32 100.0 35 NNNNNNNNNN ................................ GCCAGATTTGACACCCAAACACCGCATCAAGTACG 1375347 32 100.0 34 NNNNNNNNNN ................................ CAGGACATATTGAGAACATCAAAGGTACTCTTCA 1375413 32 100.0 33 NNNNNNNNNN ................................ CGTGATATTTTGCGAGTTACAGCACGCCGCACT 1375478 32 100.0 34 NNNNNNNNNN ................................ GACATGCGAAATGCAGGCTACGAATTACTGCAAT 1375544 32 100.0 35 NNNNNNNNNN ................................ AAAAACCAGCAACCGATGCACAAAGCGACAGGATG 1375611 32 100.0 33 NNNNNNNNNN ................................ CGGGCTGAAGCAGACCTCTGAGGCTGCCTGGCA 1375676 32 100.0 36 NNNNNNNNNN ................................ GAGTAATTCTGTCGGAATTGAAAACACTATTGACAG 1375744 32 100.0 35 NNNNNNNNNN ................................ TAGACGATCATCTAGCAATCCATAGCAGTTATCAC 1375811 32 100.0 35 NNNNNNNNNN ................................ ATGCAACGGTTGCCTACATGCTACAAAAAATCGTT 1375878 32 100.0 35 NNNNNNNNNN ................................ CTACGACGGGCAGTAATGTTTCGGGCTTTGCTACC 1375945 32 100.0 35 NNNNNNNNNN ................................ GTGTTGTGGCCAGACGATGAGGCAGAAAAATGCGC 1376012 32 100.0 34 NNNNNNNNNN ................................ GACTTAGCGTCTACCGGGAGGGCTTCTTTCTGAG 1376078 32 100.0 36 NNNNNNNNNN ................................ TTCATACAGCACCTATTTACACGCCGTAATAGTTAC 1376146 32 100.0 34 NNNNNNNNNN ................................ AAGGATACAGTAAAAAACTCTCCATTATATAATA 1376212 32 100.0 33 NNNNNNNNNN ................................ TTCGTACCAGCGATCTCTTGCCGTCTCGAACCC 1376277 32 100.0 36 NNNNNNNNNN ................................ CCGGGGAAATGTTACCGACAATAGCCTTAACTGCAA 1376345 32 100.0 34 NNNNNNNNNN ................................ ATCGACAAGATTTGGGCATCCTGGTATCAAACAC 1376411 32 100.0 33 NNNNNNNNNN ................................ CTCTTACCCGTGACAGTATAACTTCCAAGTGTC 1376476 32 100.0 34 NNNNNNNNNN ................................ GCCTTATCACAAACGCCAGCGCACACAATAGCAA 1376542 32 100.0 35 NNNNNNNNNN ................................ AATAGCAAGAACACTACTACAATCAAAAAGGCTAA 1376609 32 100.0 35 NNNNNNNNNN ................................ AAGGTTGTCAATATGCCGATAAATCACATCATCAG 1376676 32 100.0 35 NNNNNNNNNN ................................ CCGGCCTCTGCGCTGATGTTCGTTGGCGACTGGTC 1376743 32 100.0 34 NNNNNNNNNN ................................ GTGGTCTGGTTCTCGCTGATCAACCATGATGGCC 1376809 32 100.0 37 NNNNNNNNNN ................................ TTTGCTATTACTGTTCTTGCTAGTGTTGACAAAAACA 1376878 32 100.0 33 NNNNNNNNNN ................................ TCGGGTCACTGTTGCTGGCGATATTTTTGAATC 1376943 32 100.0 33 NNNNNNNNNN ................................ CTCGATGCGGCCTGGCGAGCTATCGACACCCAC 1377008 32 100.0 34 NNNNNNNNNN ................................ ATCTCCGACGTTGTCGCACATCTCTATCAATGTC 1377074 32 100.0 34 NNNNNNNNNN ................................ GGCAGTACGCAGGATGACGGGAGTGACTGTCAGT 1377140 32 100.0 33 NNNNNNNNNN ................................ CCAGGTAAGGCTTCTTCTGGATCAGGGCTTTGA 1377205 32 100.0 34 NNNNNNNNNN ................................ AAGTATCCCTCTGATTTAGGAACGCCCCATCTGT 1377271 32 100.0 37 NNNNNNNNNN ................................ CATCCCTGACGCCGAGTCCGTCGAGAGTCTTTCAATT 1377340 32 100.0 34 NNNNNNNNNN ................................ CTGAATCTGAAAATCAAATAGATAGCTGATGGGA 1377406 32 100.0 34 NNNNNNNNNN ................................ TAGTCTGTAACTGTTCGGCAAAAACGACATCCTC 1377472 32 100.0 33 NNNNNNNNNN ................................ CCCGCCCGCTTATCCAAACGAGCCGATAGGCTT 1377537 32 100.0 35 NNNNNNNNNN ................................ GTACGACCCCTACGGTGCGGCAGCCGATCTGCTGT 1377604 32 100.0 34 NNNNNNNNNN ................................ CAAAACATATAACCAAAAGGAGACCAACCAAAAT 1377670 32 100.0 35 NNNNNNNNNN ................................ AGGATGACCGGCTGCAAATCTCCGGTACTCAGTAT 1377737 32 100.0 31 NNNNNNNNNN ................................ ACTTGAGCAGGGACCGCCTCTACAAATTTGC 1377800 32 100.0 34 NNNNNNNNNN ................................ TCACTGCACTGTTCGCAGCTTTGTCCTGTGCAGT 1377866 32 100.0 35 NNNNNNNNNN ................................ AAACCATTCTCGAACGGAACAGAATTCGCTGATTG 1377933 32 100.0 35 NNNNNNNNNN ................................ ACCGCTACCTCAACGCCGCGGTTCCTGCCCTGGTG 1378000 32 100.0 33 NNNNNNNNNN ................................ GCCTTCCCATACCCGTTTGATCATTTCAAACAG 1378065 32 100.0 34 NNNNNNNNNN ................................ GAGCCATGTATCTGTACTTCGTGCTACTCAATAA 1378131 32 100.0 35 NNNNNNNNNN ................................ TGCACATCGAGCGACCGCTCGATTTGGTCATCACT 1378198 32 100.0 35 NNNNNNNNNN ................................ AAAGCCTGCATGATGGCATCGCGGTTGGCGGCATA 1378265 32 100.0 34 NNNNNNNNNN ................................ TCACTGCACTGTTCGCAGCTTTGTCCTGTGCAGT 1378331 32 100.0 34 NNNNNNNNNN ................................ GAGCATCGCTGACCGCATCCGCGCAGTCCTGCAC 1378397 32 100.0 34 NNNNNNNNNN ................................ TCGGCAACGCCGTACAGCACATCCAGCGTCACCT 1378463 32 100.0 36 NNNNNNNNNN ................................ CGTTCGTGATTTTTTACATTCTTATCGGCGGGCAAT 1378531 32 100.0 36 NNNNNNNNNN ................................ GCCAGATCTGTCTGGTACATCGTCAAGTATGCCAGC 1378599 32 100.0 36 NNNNNNNNNN ................................ GAAAGCTACAATGCCTCTTATGAGGCGTTACACAAA 1378667 32 100.0 35 NNNNNNNNNN ................................ CTCACCGCCGCGCCCGCTTGGAGATGAGCATGGCA 1378734 32 100.0 36 NNNNNNNNNN ................................ ATGGACTCGTTGACGGCTCTGATTATCGGATTACTC 1378802 32 100.0 35 NNNNNNNNNN ................................ ACGGCAGCCGTGATCCGCTCGGCTCGGAAGATGCT 1378869 32 100.0 35 NNNNNNNNNN ................................ TTGACCAGCCCGGCGCGTTTTGCATCCTCAAGAGT 1378936 32 100.0 34 NNNNNNNNNN ................................ GCAAAAAGCATGCTGTGGCAAAGAGGTGGCAGCT 1379002 32 100.0 38 NNNNNNNNNN ................................ TCTGACACGGTCGTTAGCATTTTCCCTCTTGGCGGGGG 1379072 32 100.0 34 NNNNNNNNNN ................................ GCCCTGGTCAATCCGTCGGCGATATTTGGCACAT 1379138 32 100.0 36 NNNNNNNNNN ................................ GTGTGCCTTTTTCGGTTGTGATATCTTCCCAACTCA 1379206 32 100.0 35 NNNNNNNNNN ................................ TACAAATTGCAGAGGGAGGTATCTATGATTACATG 1379273 32 100.0 36 NNNNNNNNNN ................................ TTTGCCGCCGATGTTGCAGCACCGGATATTACCGCC 1379341 32 100.0 35 NNNNNNNNNN ................................ TCGCCGGTATCAAGCATGGTTACCGCGGCATCGGG 1379408 32 100.0 33 NNNNNNNNNN ................................ AACCCATGAGAAATGCGCTTTTTGCATCCACCG 1379473 32 100.0 33 NNNNNNNNNN ................................ TTGTTGTTTCGGTTAATAAGGTTCTGCATTATT 1379538 32 100.0 34 NNNNNNNNNN ................................ TCCCATGTAATCCGGCCCTTGCTAAAAATAGCAT 1379604 32 100.0 34 NNNNNNNNNN ................................ AGTTCGCTTGTTTCCATTTCAACCCTCCGTTTTT 1379670 32 100.0 35 NNNNNNNNNN ................................ GCACTTTGACCCATTTGCCGTTGATTTCTCTCGGT 1379737 32 100.0 34 NNNNNNNNNN ................................ GCACTTTTGATTTCATCATCTGTAGCAGTGCGCT 1379803 32 100.0 34 NNNNNNNNNN ................................ TTTGTTGCCGTTCCCATTGCCATTGCCATTTGCA 1379869 32 100.0 34 NNNNNNNNNN ................................ AACCCTCTGGGTCACTCATGCGCAACTGACGCTC 1379935 32 100.0 31 NNNNNNNNNN ................................ GTTGTTTCGGTTAATAAGGTTCTGCATTATT 1379998 32 100.0 33 NNNNNNNNNN ................................ ACAGGGCAATCTTGCTTTCAGAGTTGTGGTTCA 1380063 32 100.0 34 NNNNNNNNNN ................................ ATTCCCGAGATGGTACAGATAGACGAGGTTGGCG 1380129 32 100.0 35 NNNNNNNNNN ................................ GGTTAGTTCTTCAACTGAGTGGCCGGTGAGGAAGC 1380196 32 100.0 34 NNNNNNNNNN ................................ TGTTGCCGTTGATTACCTGCCCTACACGGTCGAT 1380262 32 100.0 36 NNNNNNNNNN ................................ CCCCAGGGGGGCGCTAGGCTTTTGCTCCCAGGGACT 1380330 32 100.0 33 NNNNNNNNNN ................................ GCACAGCAAGCACATCTTGCGCCCAGATCTCGG 1380395 32 100.0 35 NNNNNNNNNN ................................ CCTGGTCAACGACCGCATCAATCAGCAGTTAAACG 1380462 32 100.0 36 NNNNNNNNNN ................................ ACACTCACCTCGCCATCCGTATCCCAGCCAAATTCG 1380530 32 100.0 35 NNNNNNNNNN ................................ CCCAGGGGGGCGCTAGGCTTTTGCTCCCAGGGACT 1380597 32 100.0 34 NNNNNNNNNN ................................ GACGCAAGTCCGGTTTTGAGCCAACACTAGAACA 1380663 32 100.0 35 NNNNNNNNNN ................................ AGCGGAAATCATCCCGTTTCGAAATGCCGATGCGG 1380730 32 100.0 35 NNNNNNNNNN ................................ TTGACATCCCGTCTCATACCTTGAGTTATCTCGCT 1380797 32 100.0 35 NNNNNNNNNN ................................ TCAAGGTATGCGTCAAGGTAAGCCACGTCAGGTTC 1380864 32 100.0 33 NNNNNNNNNN ................................ GTATATGTCGGCAAGCCGGGCATGCTTACCAAC 1380929 32 100.0 32 NNNNNNNNNN ................................ CCAGTGTACACCGCCTTTCCCCCGCCAAGAGG 1380993 32 100.0 34 NNNNNNNNNN ................................ GACCAGTGTACACCGCCTTTCCCCCGCCAAGAGG 1381059 32 100.0 33 NNNNNNNNNN ................................ TCACCTTGCCGTTTCTGGGGCGAGATATTTTGC 1381124 32 100.0 35 NNNNNNNNNN ................................ GTGCGCCGCTGGTCGGGGCTGTGTAACTGCGGGTC 1381191 32 100.0 34 NNNNNNNNNN ................................ CAAAGGGCGCATCGCTCCGGGACGCGGGGGAGAA 1381257 32 100.0 35 NNNNNNNNNN ................................ CTGCCGACAATGCGTGTCCCACCACGCCGCCCGCC 1381324 32 100.0 35 NNNNNNNNNN ................................ AGGGTATCTACGTCGTTTTCATAGTAACACACCTC 1381391 32 100.0 33 NNNNNNNNNN ................................ AGACGGTGCAAATCGGAATCGAGACCACGCCTG 1381456 32 100.0 34 NNNNNNNNNN ................................ GTCGAAGATTCAAAAACATACTATCTGGGTTCAC 1381522 32 100.0 34 NNNNNNNNNN ................................ ATGCCGCGTGGCGGAAGTTGGAAGAGCATGATAA 1381588 32 100.0 35 NNNNNNNNNN ................................ AATCATCATGTCCCAGCCGTCGTTCAAGATTTCAA 1381655 32 100.0 34 NNNNNNNNNN ................................ GAAGATGCTCAGTTTTTGGAGACGCGCAAGTTTC 1381721 32 100.0 35 NNNNNNNNNN ................................ TATCCGCAGACCATTGCCCATGCGCGGGACGTGTT 1381788 32 100.0 33 NNNNNNNNNN ................................ GTGATGATGGGCACATCTTAATGATTGAGCGCA 1381853 32 100.0 33 NNNNNNNNNN ................................ GAGACAGCCCTCCCGCCCCTGCGCGGCTGGATG 1381918 32 100.0 34 NNNNNNNNNN ................................ GTCACGTTTCCTAGCAGCGACCACGTGCCGCCAA 1381984 32 100.0 34 NNNNNNNNNN ................................ ACAATGGAACGGACAGAGATATTTTTGCGAAATC 1382050 32 100.0 33 NNNNNNNNNN ................................ TTCATGGCTTGCTCGTATGCCTGGCTGCGCTGG 1382115 32 100.0 36 NNNNNNNNNN ................................ ACGCGATTCAGCGTGGCGGCCGACATTGCATACAAC 1382183 32 100.0 34 NNNNNNNNNN ................................ ATTGCTGCTTGCACATCATTGTTACTCAGTATGC 1382249 32 100.0 33 NNNNNNNNNN ................................ AATGGAGTACACCAGGTTCGACCAATCGCCAAC 1382314 32 100.0 36 NNNNNNNNNN ................................ ATTTTGGCACATGCAATTGCGGGATTGACAGACTTG 1382382 32 100.0 34 NNNNNNNNNN ................................ TCGCCACTCCCGGCAAATTGGCGGGTCAGGATTT 1382448 32 100.0 34 NNNNNNNNNN ................................ AATCCTGACGCCGGAGATCAAAGCGCGCATGGCT 1382514 32 100.0 35 NNNNNNNNNN ................................ GTGGACGGTGTCCTGGATTGCCTGCTAGGCGTTTC 1382581 32 100.0 34 NNNNNNNNNN ................................ GTCCTCCGCGACATCTTGACCGTGTAGCGCGGGA 1382647 32 100.0 34 NNNNNNNNNN T............................... ACCATACCCTGCGACGTATGTAATCTTGACGGAC 1382713 32 100.0 35 NNNNNNNNNN T............................... AATTGTTTGTTGCTCACGTAATCCCAAAAAGCCGC 1382780 32 100.0 34 NNNNNNNNNN T............................... CAATCATCTCAACGACTTCAGGACTGTCAACGGT 1382846 32 100.0 35 NNNNNNNNNN T............................... GCAGCTCGATTCCGTACAGCAACTCGCCGGTATTT 1382913 32 100.0 34 NNNNNNNNNN T............................... TAATGAGCGAAAAAATCATCGAACGCAGATCAAT 1382979 32 100.0 35 NNNNNNNNNN T............................... GTCCTCCGCGACATCTTGACCGTGTAGCGCGGGAT 1383046 32 100.0 35 NNNNNNNNNN T............................... GGTACAGGTAGCAGCAATCAGCCGACCGGTATTGC 1383113 32 100.0 34 NNNNNNNNNN T............................... GCAGGCGATCAGGATGCTGGCGGTGCATTACTAC 1383179 32 100.0 34 NNNNNNNNNN T............................... TCCGGCTGGCCGCGCTCCTGGGCTGGGACAGTGT 1383245 32 100.0 36 NNNNNNNNNN T............................... CATCGGCAATACGTTGGGCATGTCCCTGTACTGCTC 1383313 32 100.0 35 NNNNNNNNNN T............................... GGCGCGCTCATACTCGCAAAACCCTGTCCAAACTC 1383380 32 100.0 36 NNNNNNNNNN T............................... ACCCTCTTCCAGATGCCAACGGTCTGTTTCCAGGAC 1383448 32 100.0 32 NNNNNNNNNN T............................... TTGCGGAAGAACCAGATTCAATTGACTACCGC 1383512 32 100.0 36 NNNNNNNNNN T............................... CTTCATCGTTCGATGAATTTGTCCCTTTTGAACCTT 1383580 32 100.0 35 NNNNNNNNNN T............................... CTCGTTGGAGATTTGTCATGACACCTGAATCTTCT 1383647 32 100.0 34 NNNNNNNNNN T............................... GGCGGAGAAACCGCCGGAGCGGGGAGACAGAGAT 1383713 32 100.0 35 NNNNNNNNNN T............................... AAGGGGAGGGTGGCTATGTGTGTATGTACTGCTTT 1383780 32 100.0 34 NNNNNNNNNN T............................... TGGTTTGGGAAGGTGCTATGGGTAGTATAGCATT 1383846 32 100.0 32 NNNNNNNNNN T............................... TTTTGTATATCAATCATCAAGATGGTCTCAAG 1383910 32 100.0 34 NNNNNNNNNN T............................... GCGTGGGAGGCAGGAATGTAATTTCCCCAAACTT 1383976 32 100.0 34 NNNNNNNNNN T............................... AGGTGGGTAGGGTAAGCATGTCAATCCTTTCGTC 1384042 32 100.0 1 NNNNNNNNNN T............................... NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 225 32 34 GTTTCAATCCACGCCTCCGCGAGGGAGGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [6,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.50,-7.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [293,179] Score: 0/0.18 # # Final direction: R [0.37,5.28 Confidence: HIGH] >NC_014960 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 184361 36 100.0 35 CTGAACATGG .................................... ATAAGAAAATGTTTACTATTATTGCTCTTGTAATC 184432 36 100.0 38 TCTTGTAATC .................................... CTTAGTCGGGGCGAAGGTCGAGTTCTTCGACAAGCGCC 184506 36 100.0 38 GACAAGCGCC .................................... GCGGTCTGTCAACTAGCGAGTCTTCCGCTTCCGGACGA 184580 36 100.0 40 TTCCGGACGA .................................... CCAGGAAATTGTAGGAAACGTAAACGGGATTCCTGTGGTA 184656 36 100.0 40 TCCTGTGGTA .................................... TTCAAAGAAAGGAAGGATAAATTCATATGGTCACAATTAT 184732 36 100.0 36 TCACAATTAT .................................... CTTTCGAGTGATCCGCACGGGTGAGGAAAAAATCCT 184804 36 100.0 38 AAAAAATCCT .................................... CGTGAGCACTACAAGCAGGAAGCCGTCCTCGTCGCCGA 184878 36 100.0 49 TCGTCGCCGA .................................... GTCACAAGTTGCAGAACTTGTAGACCCGCCATATAGCCCGTCTTACATT 184963 36 100.0 41 GTCTTACATT .................................... ATAATATTTATCTGTATGACGAAAATTTCCTGGCTTTAGCA 185040 36 100.0 44 GGCTTTAGCA .................................... CTTTACAAGGTATGGCGATAGTTACAATAATTCAAGCTGGAAAT 185120 36 100.0 AGCTGGAAAT .................................... TGCACTTTTG ========== ====== ====== ====== ========== ==================================== 11 36 39 GTCTTAATCCCCTTCCGGGGCTTCTTAGATTCTGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,13] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.10,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [58.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [345,280] Score: 0/0.18 # # Final direction: R [0.27,0.74 Confidence: MEDIUM] >NC_014960 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 757088 37 97.3 37 CGGATGGCAA ..............G...................... TCGAAGAACCGTCATTTATTCTTGAAATTGCGTTTTG 757162 37 100.0 36 TTGCGTTTTG ..................................... ATCCTGGTAACTTTCCACGAAGAGATTAACCGCGAA 757235 37 100.0 36 TAACCGCGAA ..................................... GACGAACAGCATCCTATCCTGCAGTACATGATAAAT 757308 37 100.0 38 CATGATAAAT ..................................... CCGGTGATGACCAGCATAAAAAACAGCGCGCCAGCGAT 757383 37 100.0 36 CGCCAGCGAT ..................................... ACCGCAGCCGCATCCCCCCGATTCGTTACCGGATAG 757456 37 100.0 36 TACCGGATAG ..................................... AGAATGTATTCAATCGTGAACGAATTGTTTTCTTCT 757529 37 100.0 36 GTTTTCTTCT ..................................... CCTATTAGGGAGGCAGCGGGTGGCCTGCCCCGAAAG 757602 37 100.0 37 GCCCCGAAAG ..................................... TTTGAAGTACCCATTTTCGGGCGCGTGAATCTTTACA 757676 37 100.0 37 AATCTTTACA ..................................... TTTGAAGTACCCATTTTCGGGCGCGTGAATCTTTACA 757750 37 100.0 36 AATCTTTACA ..................................... CATCCACTCGCCCACAGGTGCTTCTCAGAGCACCTG 757823 37 100.0 38 AGAGCACCTG ..................................... GCACCTGTCCTTATTTTAGCCGGTTTTCAGCCATTCTT 757898 37 100.0 36 AGCCATTCTT ..................................... AAAATACGGGCGCAGGACTTCTTCAACGCGCCACAC 757971 37 100.0 35 CGCGCCACAC ..................................... AAATACAGGCGCAGGACTTCTTCAACGCGCCACAC 758043 37 100.0 36 CGCGCCACAC ..................................... GAATGGCGAGAGTCTATGATAGTCACGGGTTTACTA 758116 37 100.0 35 GGGTTTACTA ..................................... GGAGTAATTTCAAACCCCTTGATTGTCCAGTATGA 758188 37 100.0 36 TCCAGTATGA ..................................... CCACAAGTGCTTAAGTACCTTGTTGCCGAGGGCGAA 758261 37 100.0 38 CGAGGGCGAA ..................................... TGGGGGTTTGGTGCCGCATGCCCGTTTGAGTGGCCGTA 758336 37 100.0 37 AGTGGCCGTA ..................................... ATCAGCAGAAACGAAATAGAAGATTTGTTCAAGTCGT 758410 37 100.0 36 TTCAAGTCGT ..................................... TAAACCAGGCATGCCAAAGTGTAAATGATAATGGTT 758483 37 100.0 36 GATAATGGTT ..................................... AAAGTTGACCAGTGCAAAGGTGAGAACCAGCACGAC 758556 37 100.0 36 CCAGCACGAC ..................................... CGTTGAGCCGCCGTCCAGCGAGAGTTGCGCTTCGGT 758629 37 100.0 38 GCGCTTCGGT ..................................... AAATTCTTGCTGGAAGTACTTATGCTTTTGCGGCTGAA 758704 37 100.0 37 TGCGGCTGAA ..................................... TGCGTCTGGCGGCGATCCGCTCTCTCTTGCGCCACCT 758778 37 100.0 36 TGCGCCACCT ..................................... TCATCGGCGGGTGACTTCATCAAGGCGTTTGTCGAG 758851 37 100.0 36 GTTTGTCGAG ..................................... TGAAACGCGCTTCCGAACGCCAGAGCGCTGGTTGTG 758924 37 100.0 35 GCTGGTTGTG ..................................... ACAAACACCATAAGGATTCCATGACCACCACAATT 758996 37 100.0 35 CACCACAATT ..................................... GAGGGAAAAATCAACGAGACTGTAACAAAAGACGA 759068 37 100.0 37 CAAAAGACGA ..................................... GTTTTTCAGAAGGTTGAAAAACTGAATCGTTATTCGT 759142 37 100.0 37 CGTTATTCGT ..................................... TACTACCAAAGCAAGGCTGGTCGCGGTGCAAGCGTGG 759216 37 100.0 36 GCAAGCGTGG ..................................... TCATCGGCGGGTGACTTCATCAAGGCGTTTGTCGAG 759289 37 100.0 35 GTTTGTCGAG ..................................... AAAATAAACACTGTTTCAAAAATAAACGTTTTTGT 759361 37 100.0 36 ACGTTTTTGT ..................................... TTGTAAAGTCCCTCTCAGCGACGCAAGTCGCTGAGT 759434 37 100.0 34 GTCGCTGAGT ..................................... AACGAAAGATAACAGAATTATCAACCCGTTTCGA 759505 37 100.0 35 CCCGTTTCGA ..................................... TTTTAGGAGGTGATAAAAGACATATCTTCATCAAA 759577 37 100.0 35 CTTCATCAAA ..................................... TACAACATGACTTATCCAGAGTATTTGCGGGTTAT 759649 37 100.0 36 TGCGGGTTAT ..................................... TGATTACGCTATAAATTTTCCTGCATTGAAAAAAGC 759722 37 100.0 37 TGAAAAAAGC ..................................... TACCGTACCCAAGAAATCCTGCCTGCGTCGGACTTAC 759796 37 100.0 36 TCGGACTTAC ..................................... TAAGGGCAATCCTCTTTACTATCCTACAAATTTAGG 759869 37 100.0 35 CAAATTTAGG ..................................... GTTTGGCTTTTTTGGTCGGTGATGGTAACACCAAG 759941 37 100.0 36 TAACACCAAG ..................................... CTCCATGAGATCATGGAGAGCATTCGCACCAACGGA 760014 37 100.0 36 CACCAACGGA ..................................... TTTGGGAATTTGGGAATTTGGGAATTTTGGGAATTT 760087 37 100.0 36 TTGGGAATTT ..................................... GCGTACAGGTCCAATCCCGCGATAATCGCACCAGAC 760160 37 100.0 35 CGCACCAGAC ..................................... AACTTCTCAAACAATGACACACCAGGTTCAATTTG 760232 37 100.0 38 GTTCAATTTG ..................................... TTCCGGATTGCGCCACAACTGCCATCCGACAAAGGCAT 760307 37 100.0 35 ACAAAGGCAT ..................................... TGCCCATGCTCCCAAAGTGGGAGCAAGCAAAATCG 760379 37 100.0 35 AGCAAAATCG ..................................... GGCGGAATTAGTCAATATTCACCCCGCGCTCCCGA 760451 37 100.0 38 GCGCTCCCGA ..................................... AGTGAGAAAAATGGCTGAAGAAGTCAAACCGACCCAGG 760526 37 100.0 35 CCGACCCAGG ..................................... CGATTTGTCGAGCGCGTTCAACAGGCTTACGACAA 760598 37 100.0 36 CTTACGACAA ..................................... GGGTAGCGCGCAGCCAAGGATGTTCGCCCGCCCAGC 760671 37 100.0 36 CCCGCCCAGC ..................................... AACCTGCCTCGCTCATGATGTCATGCCACTCCTGGG 760744 37 100.0 36 CACTCCTGGG ..................................... CCGAGCATGTCGGAGCAATGCTCAAAATTACTTACT 760817 37 100.0 38 ATTACTTACT ..................................... GGCTGTGTGGGGCGAAAATCCACCGCCCTGGCTGATCT 760892 37 100.0 35 TGGCTGATCT ..................................... AACTGGCGCGCCGAAGACCCGACCCGCTCCGAAGA 760964 37 100.0 37 GCTCCGAAGA ..................................... GACGTTGAATCCATACTCAAAGCAGACTATACTCACG 761038 37 100.0 38 TATACTCACG ..................................... TGGTTGGGATTGGCTACTTGAAAGCGACTACTAGCAAT 761113 37 100.0 36 TACTAGCAAT ..................................... GTTAGTGCCAGTTTCCAGCGAGACATTCTCACGGAA 761186 37 100.0 35 TCTCACGGAA ..................................... TATCCACTAACATTGCATCCCACTCTATCCACTAG 761258 37 100.0 35 TATCCACTAG ..................................... CACTCCGGTGCAACTGGATGGTGAAATTGTAACAA 761330 37 100.0 35 ATTGTAACAA ..................................... GACGTGGGTGGTGGTGGAAAACGTGGATGGATTGC 761402 37 100.0 35 GATGGATTGC ..................................... AGAAAAAATCAGGCGCGCCATTACCAGAGAACGAA 761474 37 100.0 37 AGAGAACGAA ..................................... CCGAGACCTGGCAACGTTGTGGTTGCCGGTAACTCCG 761548 37 100.0 35 GGTAACTCCG ..................................... CCCGGACTTTGAAGATGCTATTAAAGCCTAACGCT 761620 37 100.0 37 GCCTAACGCT ..................................... ATGCCGAGCGCTCCCTGCTGTACACGCTGGGACCGGT 761694 37 100.0 35 TGGGACCGGT ..................................... ATCACTGTAGGTGTGCGCGGATTGCGCTACACATT 761766 37 100.0 36 GCTACACATT ..................................... CAATTTCTCAATACGTGCGCGGGTTGTTGGACGGTG 761839 37 100.0 36 TTGGACGGTG ..................................... AAGTCCAGCGGGTAACCTTCCGATCCATCACCCGTG 761912 37 100.0 35 ATCACCCGTG ..................................... GTCTCACCCCGTTTGTGGTCCGCCATGAAGAAGCA 761984 37 100.0 TGAAGAAGCA ..................................... CGCATTTTCT ========== ====== ====== ====== ========== ===================================== 68 37 36 GTTTCAGTATCCACTAACGGATCGAGGGGGATGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [10,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-3.20,-3.20] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [33.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [216,211] Score: 0/0.18 # # Final direction: R [0.37,0.68 Confidence: LOW] >NC_014960 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3137717 37 100.0 36 CAAAAAAAAC ..................................... CGACGGAACAAAGGAAATCCCTGCGGCGGAAATCAA 3137790 37 100.0 36 CGGAAATCAA ..................................... GACTGAACCGATTTGCCATCGGCTCAGTCAGAATGC 3137863 37 100.0 37 GTCAGAATGC ..................................... TCCCCCAGGCGTGCCACCTGGGGGGGGGCGTGACAAA 3137937 37 100.0 36 GCGTGACAAA ..................................... GTTTGGCGGGGATTTCCTTCGCGCCATCGAGGACGA 3138010 37 100.0 37 TCGAGGACGA ..................................... TATGTGTAAAAGAAAATCCACTGAGTAATCAACTCAG 3138084 37 100.0 42 ATCAACTCAG ..................................... GCCGTAGTGGCGTGGGTGACAGCCGCCATTGAATTCGTACTG 3138163 37 100.0 35 ATTCGTACTG ..................................... TGAGTGTGTGTTCCGTGTCTATCTCCCTTGAGCAT 3138235 37 100.0 35 CCTTGAGCAT ..................................... AGCCTCCCGGCAATGGTAGCACAGCGCCTTTTCCT 3138307 37 100.0 36 GCCTTTTCCT ..................................... GGTTTGTATCCGCGCCAATCACAACTTGGAGTTCAG 3138380 37 100.0 37 TGGAGTTCAG ..................................... CCGTGACGACGATGCCGTCGTTTTCACTGAGCTGACC 3138454 37 100.0 38 TGAGCTGACC ..................................... TCAACTCCTGTTTCGCAGTACTCAGCCGTTTTTTTTTG 3138529 37 100.0 35 TTTTTTTTTG ..................................... ACAGGTAGGATTTCAAGCCCCTCACGCAGCAGAGG 3138601 37 100.0 35 GCAGCAGAGG ..................................... ACCATGCCCTGATTGCATCAAAAAATCATCTTTCC 3138673 37 100.0 37 TCATCTTTCC ..................................... GGAGACTAAGGCTGTCGACTGGGCATGGCATCTCAGC 3138747 37 100.0 35 GCATCTCAGC ..................................... AAAGAGCTGCTGACCTGTATCGCGTTGAACAAGCG 3138819 37 100.0 35 TGAACAAGCG ..................................... GCTTTGTGTTACCACTGCAGGGAGGCTCATTATGT 3138891 37 100.0 36 CTCATTATGT ..................................... GGTCAGAACAAAAGATGACCTGAAGAAAGCCGCTGT 3138964 37 100.0 37 AAGCCGCTGT ..................................... ACATCACTGTTTCAATGCCCTCCCCCGCGTCGAGGGG 3139038 37 100.0 38 CGTCGAGGGG ..................................... CCAGCAATAAGAGTGGCACTTGTCGCACCAGCCGTCAT 3139113 37 100.0 36 CAGCCGTCAT ..................................... CTGCGAGCGCAGGAGGACCTGTTGTACGCCAAAAAA 3139186 37 100.0 35 CGCCAAAAAA ..................................... GCAATTCCAATTGAGTTCAAATAGGAGGTGAATTA 3139258 37 100.0 39 AGGTGAATTA ..................................... AAGTCGAGGGATTCCTGAGTGAAATCCCGCCAGTTCTTG 3139334 37 100.0 36 CCAGTTCTTG ..................................... TGATAAACAAGCAGAAGATTTACACTGTGACCGAGT 3139407 37 100.0 36 GTGACCGAGT ..................................... GGAACTGCTGGAGGATGACGATGTCATCCTCTTGGA 3139480 37 100.0 38 TCCTCTTGGA ..................................... CTTGCCCTGGGCAAGCATGCCCTATTCGTGATTAGACC 3139555 37 100.0 38 TGATTAGACC ..................................... ATTACGGTCGCACGGATTTCAGCAATCCGCGATGATGA 3139630 37 100.0 35 GCGATGATGA ..................................... CTGTGCTTTACCCTGACCGTTCATACACCTCGCCT 3139702 37 100.0 36 CACCTCGCCT ..................................... TCTACAGCATCTGCGTAACGCAGCGAGACCTCCGGT 3139775 37 100.0 35 GACCTCCGGT ..................................... TTTCCGTCATACTGGGGAAATCCTCCCCAGTATGA 3139847 37 100.0 37 CCCAGTATGA ..................................... ACAACGCCAGTTGTCCCTTCACTGGGACAACTGCAGG 3139921 37 100.0 37 CAACTGCAGG ..................................... TGTGTTCCGTCAAATGGGGTAACTGCCTCCAGATAGA 3139995 37 100.0 36 TCCAGATAGA ..................................... TTTTGTATCGCGCGCGCTTCAAGCTGTTGACCAACC 3140068 37 100.0 35 TTGACCAACC ..................................... AACGAAGAGAAGGAATATCACGATAAACATCATCA 3140140 37 100.0 37 AACATCATCA ..................................... AGAATGCGCAGTACGTAGAGCAGGCGAAAGCTGCAAT 3140214 37 100.0 37 AAGCTGCAAT ..................................... CGATGCGATGGCAGCGGGAGAATCAATCAAGCTCAAG 3140288 37 100.0 36 CAAGCTCAAG ..................................... CCAAGAGGTGGTCACTGTTTGCGGACGGGCCTAGGA 3140361 37 100.0 36 GGGCCTAGGA ..................................... GACGTAAGAGCGAAACGGGCTGGTACGAAGTAGAAG 3140434 37 100.0 36 GAAGTAGAAG ..................................... TGGAACGCTTCCAATCCTGGAGAGGGCTTGGCCCTC 3140507 37 100.0 35 CTTGGCCCTC ..................................... CCTGCGAGCGCAGGAGGACCTGCTGTCCAAAAAAG 3140579 37 100.0 37 TCCAAAAAAG ..................................... CAAGGTTACACAGTTGAAAAGAAAAAAGGAGGAAAAA 3140653 37 100.0 38 GGAGGAAAAA ..................................... AGCGGATATATCGGGGAGGGCGCGGCCCTGTCATTTGT 3140728 37 100.0 36 TGTCATTTGT ..................................... ATTCGCCGATGTTGATAAACCTGAAGGTACAAACTG 3140801 37 100.0 37 GTACAAACTG ..................................... TGGTACGAGGTTGCGGAAGACCAGCAGGAAGACCAGC 3140875 37 100.0 36 GAAGACCAGC ..................................... ATTGGGATCAGTGCAGATGTCTATAGACCTCTACGT 3140948 37 100.0 37 ACCTCTACGT ..................................... AGGTGGCTCATAAGACACGTATTATCAAATCTTTAGA 3141022 37 100.0 35 AATCTTTAGA ..................................... ATGAAAGAGTTAAGTACTGAAGTTGTTCCTGAATT 3141094 37 100.0 36 TTCCTGAATT ..................................... CCCATGATCTACTGCTCGCCGCGAATCATCAAAGAG 3141167 37 100.0 36 CATCAAAGAG ..................................... TTGACGCGCGTTGACAACTCCGCAATCTGACGTTGC 3141240 37 100.0 35 CTGACGTTGC ..................................... ACTGGTACATCTGGCAGAAGACCAACACAACGAAC 3141312 37 100.0 35 CACAACGAAC ..................................... TCAGACATGAGAATTTAGGTGGTACTGTGGTCGCT 3141384 37 100.0 36 TGTGGTCGCT ..................................... CATATAACCCAAAGCATGGTAACAAAGTCGAGGTGA 3141457 37 100.0 35 GTCGAGGTGA ..................................... GTTTTTTCAGAAACATCCCCCTTACCGTGTCGAGG 3141529 37 100.0 38 CGTGTCGAGG ..................................... TGTCGTTGCAGTGAGAGATTAGAGACGCGCTCTTCCGC 3141604 37 100.0 37 GCTCTTCCGC ..................................... CACCGGGATTGATCATGAAAGACGATTACAACAATAT 3141678 37 100.0 35 ACAACAATAT ..................................... AAGCTCCTCTCGCAGGAGAATTTCGGTAGCACTGA 3141750 37 100.0 36 GTAGCACTGA ..................................... CCGGTATTTGCGGTGCGAAAGCACGAGCACCAGTCT 3141823 37 100.0 38 GCACCAGTCT ..................................... GGAGCATTTCGGCGCTACAGAAGGCCGTGAGCTGAAAG 3141898 37 100.0 35 GAGCTGAAAG ..................................... AGCCGATAGGCACTTTTTTGAATTTGATATCCTCA 3141970 37 100.0 35 GATATCCTCA ..................................... AGCCAATCTGGTAAAGACGCTGTCTACCAGAGTGA 3142042 37 100.0 37 ACCAGAGTGA ..................................... GCAAAGCGGCTTTGTGGAATTCTCTGCGCTCAGAGAG 3142116 37 100.0 37 GCTCAGAGAG ..................................... AAGGAAATCAAAAAATTTGCCCGTGACTACAATGAGG 3142190 37 100.0 36 TACAATGAGG ..................................... CTGCCCATGCCCGACGACGCAGTCGTCGTCCTTGAC 3142263 37 100.0 36 CGTCCTTGAC ..................................... AGGTCTGGGGCGTTTATGACCGTCTTGACCCTGGAG 3142336 37 100.0 36 GACCCTGGAG ..................................... CTTACTGGTATGCGCAGTCGCCGCTGGTTACCTTCG 3142409 37 100.0 35 GTTACCTTCG ..................................... AAAAGGCGGGATGAAAACCCGCCTGGATAGTGGAA 3142481 37 100.0 36 GATAGTGGAA ..................................... TAATCCACATCCCCAGGTTCGAAGCAAACACCTTAT 3142554 37 100.0 36 AACACCTTAT ..................................... AGCGCGCGTTTTTCCGCAGGTACTTTGCCTACACCC 3142627 37 100.0 36 GCCTACACCC ..................................... TTTTAGGGTCGGCAGTGTCCGGCTCGTCGAGAAAGA 3142700 37 100.0 35 TCGAGAAAGA ..................................... GCCCGGCAAAGCGAGTGACGCTAATTTCCGTAATG 3142772 37 100.0 37 TTCCGTAATG ..................................... GAAAGGGGCGCCCCGTGTTCATCGCTGGAACCCTCAA 3142846 37 100.0 38 GAACCCTCAA ..................................... AATGCCCATTCTTTTTCTTCCTCAACGTAAGCCAGCAA 3142921 37 100.0 39 AAGCCAGCAA ..................................... CTTGTGTAATGGTAAGGGATGTAATCGGGGCAATCAAAA 3142997 37 100.0 37 GCAATCAAAA ..................................... TAAGCCGGTCAAGGCGAAAATCACTGAGGGTTTATGG 3143071 37 100.0 35 GGGTTTATGG ..................................... TGTCGAGGTCGGAACTCTGGACGATGTGCGACGAT 3143143 37 100.0 36 GTGCGACGAT ..................................... GGTTCGGGACCGGGTTCATGCTGATGCGTCCTCGAT 3143216 37 100.0 37 CGTCCTCGAT ..................................... AGGTCCCGCCGAATCCGGCTTGACGTTTCTTGATGAT 3143290 37 100.0 38 TCTTGATGAT ..................................... CTGCAGCAGTTCCAAATCCAGAACTGCTGCTAGCAAGT 3143365 37 100.0 35 GCTAGCAAGT ..................................... GCGGCAAGGAAGTTGCCGTCATACTTTGAGGAATA 3143437 37 100.0 35 TTGAGGAATA ..................................... GTCGTGATTTTGGACGGTATCGAGGTCGGCACGGT 3143509 37 100.0 35 TCGGCACGGT ..................................... CCATGTCAGGTACCGTAGTACACAAAACTGAAATT 3143581 37 100.0 36 AACTGAAATT ..................................... AGTGTAGGGCGCCCTCACTCATTCTGACATGTCTTG 3143654 37 100.0 36 ACATGTCTTG ..................................... GGCTTACGCTTATGCGTCAACAGTGTCCGTTCCGTT 3143727 37 100.0 36 CCGTTCCGTT ..................................... TGAAATCGTTAATTTGATGAGAATCAACAAAACAAT 3143800 37 100.0 36 ACAAAACAAT ..................................... TAGATAATTACGTAGGCTGGCAACTCTGGCGGAATA 3143873 37 100.0 36 TGGCGGAATA ..................................... CTTGAAAGGCTTCAGTCAGTACGGGATCGAACTGAC 3143946 37 100.0 37 TCGAACTGAC ..................................... GACGGCATAGAGGATGATTCTGCCGTAATTAGAAAAA 3144020 37 100.0 36 ATTAGAAAAA ..................................... CCAGAGGGGTCGACAACGTTATTACAGACTCTTCAA 3144093 37 97.3 36 GACTCTTCAA ..............................A...... ACTGAGCTCGCTCTCCGGAACACCGAATTTAGCACT 3144166 37 97.3 36 ATTTAGCACT ..............................A...... GGGTAATAGAGAGGATTGCCCTTAATCTCGAATATC 3144239 37 97.3 37 CTCGAATATC ..............................A...... CGTAGGGGGTATCGTGTATTACAAGTTGTTGAGGATG 3144313 37 97.3 36 GTTGAGGATG ..............................A...... GTGAAACGTATCGGGTTTGATTTACCTGTTTTCGGT 3144386 37 97.3 35 TGTTTTCGGT ..............................A...... TGCCTCAGCAATGGTGCGACTACGATGCCGAGAAG 3144458 37 97.3 37 TGCCGAGAAG ..............................A...... TACAAATCCGTCAAGAATTTGACTTCATCGCACAGGT 3144532 37 97.3 36 TCGCACAGGT ..............................A...... TCCTGGCGATTTTCAAAGACGAAGCCGAGTGCCGCG 3144605 37 97.3 37 GAGTGCCGCG ..............................A...... GGGAACAAGGAACGCGAAACTGCGTACAAATTTCTGA 3144679 37 97.3 37 AAATTTCTGA ..............................A...... TCCAAAAAAACAGCAATTGCTACCGTGAAAGTTAAAG 3144753 37 97.3 36 AAAGTTAAAG ..............................A...... CTGATGGGACTTCCTGGCATCGGACTGGAGCGGGCG 3144826 37 97.3 40 GGAGCGGGCG ..............................A...... GTCGCAGCACTAGTAAAACTCGGCGAAGCGTTCGCCGCGG 3144903 37 97.3 35 TTCGCCGCGG ..............................A...... TCGTCCCCAAAACACTTGACAATTAGTACCGTATG 3144975 37 97.3 34 GTACCGTATG ..............................A...... ACGGTTGCCACAGAGCAACCGCATGCAAGTTGCT 3145046 37 97.3 37 GCAAGTTGCT ..............................A...... AATGGGCATCAATTGTCCTGCCCAGCATCCGCGATCT 3145120 37 97.3 35 TCCGCGATCT ..............................A...... GCCAACGCCTTTTTCAAGTACGCAGAACCACGATG 3145192 37 97.3 35 AACCACGATG ..............................A...... GTCAGCACCTTAAAAATCTGATAGACTAGAAAGGA 3145264 37 97.3 36 CTAGAAAGGA ..............................A...... CCTGTCCAGAGAGTCGAGCATCCAGCACCTCGCGAA 3145337 37 97.3 37 ACCTCGCGAA ..............................A...... ATATTGTTGCTTCCGCCGCCAGCGCCCTCGGACGTCT 3145411 37 97.3 35 TCGGACGTCT ..............................A...... AGAGATTGCCCCCCTACCAGAAGAGGGGGAAAGAT 3145483 37 97.3 37 GGGGAAAGAT ..............................A...... TTGGCCTTCCTGGTCGGTGACGGCAACACTAAACGTC 3145557 37 97.3 37 ACTAAACGTC ..............................A...... TGCTTACCTACTTCTTCACGCCTGTCCCACGAGAGTA 3145631 37 97.3 36 CACGAGAGTA ..............................A...... GTTCCTCCGCTACCCGAACACGTGGAACCCAAAACA 3145704 37 97.3 35 ACCCAAAACA ..............................A...... CTCGGCGGAGGGCGCGCGGTTTACACTGGACCAAT 3145776 37 97.3 36 CTGGACCAAT ..............................A...... TGGAGTGGCTCTATGGCGAGTATGACGCTATACAGA 3145849 37 97.3 35 GCTATACAGA ..............................A...... GAGATTACTCCCTTCTCGCAAATTTTCGAGATTAA 3145921 37 97.3 37 TCGAGATTAA ..............................A...... ATCGGAGGTCCACCCTGTCAGGCGCACAGCCGTTTAG 3145995 37 97.3 36 AGCCGTTTAG ..............................A...... GAATTTGCGCGGTGTGTAGAGGAAGCCCAACCCGAA 3146068 37 97.3 38 CCAACCCGAA ..............................A...... TACCCCAATATCGCTTACCCACGAGCGGGCGAACTTTG 3146143 37 97.3 36 GCGAACTTTG ..............................A...... CAAATCGCACCTTCAAAAAGACCTGTGTTGGAAAAA 3146216 37 97.3 GTTGGAAAAA ..............................A...... CGCATTTTCT ========== ====== ====== ====== ========== ===================================== 117 37 36 GTTTCAGTATCCACTAACGGATCGAGGGGGGTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [9,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-3.20,-3.20] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [41.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [226,151] Score: 0/0.18 # # Final direction: F [0.37,0.27 Confidence: LOW] >NC_014961 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 1000324 25 100.0 40 TCGACAAATA ......................... AGTCTACCGAGGAACAATATGACACGGTTTATCGCATTAA 1000389 25 100.0 39 ATCGCATTAA ......................... TAAGAATAACTACTACGTGTCCCGTCGGGCATACGAGTA 1000453 25 100.0 38 CATACGAGTA ......................... GAAGGCTATTAGCGATATGAACACGGCTAGATGTATTA 1000516 25 100.0 40 AGATGTATTA ......................... TAGTAACCACCGGGTGTATTGCTAACCAGCGAATTAAAGT 1000581 25 100.0 39 GAATTAAAGT ......................... ATGGTGTACACGGTTTTATAGTCTAGTGCACTGAGGTCG 1000645 25 100.0 37 ACTGAGGTCG ......................... ACTCAGTGTTGCTCGGTGGCTTCTACTATAATGGGAA 1000707 25 100.0 39 ATAATGGGAA ......................... ATTATGCAAAAGAAACCCCCTAGGCTTCTACCCTTCTAC 1000771 25 100.0 39 ACCCTTCTAC ......................... CTAGCACCTGGCGAGACTAAGACTATAACGCTACCATTC 1000835 25 100.0 41 GCTACCATTC ......................... CACGGTGAAGAAGAAGCCGCCGGGCAACGTCATCTGCTTAA 1000901 25 100.0 40 ATCTGCTTAA ......................... ATAGGCTCCTCCTGAGGCTCCTTCATGATGCGTAGGGGAG 1000966 25 100.0 41 CGTAGGGGAG ......................... ACTATTCTCGACAGGTCAAGGGTAAACTCCTTTCCACTCAT 1001032 25 100.0 40 TTCCACTCAT ......................... TCTCCGCCACCGCGCTGAAAGCACCGTCAAAGGCTACAAG 1001097 25 100.0 38 AGGCTACAAG ......................... ATGACGCCAAGTTAGTTAAATCAGCAGTTGTAATCTCG 1001160 25 100.0 39 TGTAATCTCG ......................... TAATACCCGAGGAGGCAAGGGAATACAGGGATATGTGTA 1001224 25 100.0 40 GATATGTGTA ......................... GCCATTAACCTCTACTGCTGTCAATACCACTTCCTCATAA 1001289 25 100.0 41 TTCCTCATAA ......................... ATTGTTGAATGGGTCATATACACTTTGCCGTCTAGTAACAC 1001355 25 100.0 40 CTAGTAACAC ......................... ATGACCCAATCACACTCAACATCATTGAGGCACTCTTCCT 1001420 25 100.0 38 CACTCTTCCT ......................... ATACTCCTCGTGCTCCTTCTCGTATTTCTTGTGCTCCT 1001483 25 100.0 39 TTGTGCTCCT ......................... CTTATTGTCCTTCAGCCACCTATACACTATTTCAACGCC 1001547 25 100.0 39 TTTCAACGCC ......................... TTTGGCTGGCGGTTCTGATACTCAGTCCATGATAAATCC 1001611 25 100.0 38 TGATAAATCC ......................... ACATCACCACTAGTGGGGTATGTTGTGCTTCCCATTTT 1001674 25 100.0 38 TTCCCATTTT ......................... ACTCCCTGAGGGAGTCCCAGTTTATCCCCGGGGTTTCA 1001737 25 100.0 39 CGGGGTTTCA ......................... AGCGAATACCCGGTGATCACGCCGGCGAACATGCTTGCA 1001801 25 100.0 39 CATGCTTGCA ......................... TAGAGGTGGTTGGGTATGAGCTACATGGTTGAAGTATGG 1001865 25 100.0 40 TGAAGTATGG ......................... CTGGGATTGATGTTGAAGTTGAGGCTTGCGAGGAGGCTGG 1001930 25 100.0 39 AGGAGGCTGG ......................... TCAGAGCCCTCGGGGGCAAAGCCCTCGGGGGCTCGACCT 1001994 25 100.0 39 GGCTCGACCT ......................... CTCCATTCCCTTATACACTCCCACTCGATGTCATCATAG 1002058 25 100.0 38 GTCATCATAG ......................... ATTAGATCATATAATATTAGGTAAACCTAGCGTTTTAA 1002121 25 100.0 40 AGCGTTTTAA ......................... TCATCACCTTGGTGAGTAATCTGAGTAACATCCCCGATGT 1002186 25 100.0 38 TCCCCGATGT ......................... CCTCACTCCCCTTCACCTCCCAGCGCGAGATACGCTAG 1002249 25 100.0 39 GATACGCTAG ......................... ACTCATCTTCCGTGGGAGGCGAGCCCCTAATGCCATAGG 1002313 25 100.0 36 ATGCCATAGG ......................... CGCATGCCGTTAATGTAGTCATCCTCAAGGGCCCGG 1002374 25 100.0 41 AAGGGCCCGG ......................... AGCAAGTAAATAACGACGCTGCGGTGATAACCAATGCCAAC 1002440 25 100.0 40 CAATGCCAAC ......................... GGGTCGGCCAGTATAATGTACTCCACGTCCCGCGGCATAG 1002505 25 100.0 39 CGCGGCATAG ......................... GGGAGCTCCGTGCGGAGCGAGTACTTCACAGCGTACTCC 1002569 25 100.0 39 AGCGTACTCC ......................... TTAACGTCAAGTGCATATACATAATTATCGTCATTTTCA 1002633 25 100.0 38 GTCATTTTCA ......................... GTAAACACCACTTTCCTGGATCTGCTGAAGAACGGCAC 1002696 25 100.0 39 AGAACGGCAC ......................... CATTTACGCTTACAATGCTATCCCTGAAGGTTACATTAA 1002760 25 100.0 39 GTTACATTAA ......................... TATTCGCTATGGCTGGAGGCATAGGTCTAGGTCTATTCC 1002824 25 100.0 40 GGTCTATTCC ......................... GATTAGTGTAGTTGCCCATGAGGTCAGCACCGGGGATTGC 1002889 25 100.0 39 CGGGGATTGC ......................... TATAATCCGCCAACCGATATGGAACGGGCTCCAGATACA 1002953 25 100.0 41 TCCAGATACA ......................... ACCTGAGATGTTAACGGGACGAGGCTTATAACCACGGCTAA 1003019 25 100.0 40 CCACGGCTAA ......................... TTGCACCTCTGTAGGGTTTCCCGTGCCTCGGCGAGGATTG 1003084 25 100.0 39 GCGAGGATTG ......................... TAGAGAGGTTTATGGTCTCAATTAGTCAAAAAGTCGAGA 1003148 25 100.0 40 AAAGTCGAGA ......................... GCATATATCTCAGAGAAGAAGCCCAAGTCCGATACACTTG 1003213 25 100.0 38 GATACACTTG ......................... CCCTTCTTCTCCACTAGTATTAGGTAGCCGTGCTTGTA 1003276 25 100.0 CGTGCTTGTA ......................... CTTGTAGGAA ========== ====== ====== ====== ========== ========================= 47 25 39 ACCTCAATGTAAAGAGGATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [61.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [214,114] Score: 0/0.18 # # Final direction: F [4.77,0 Confidence: HIGH] >NC_014961 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 1028458 25 100.0 41 TTCGACAAAT ......................... ATCCGGGCCGAAGTAATCGACATATTGGCCCGTAAAATGGG 1028524 25 100.0 40 GTAAAATGGG ......................... GTTCACATTTGCGAACACTATTCATACCCATAGACAATGT 1028589 25 100.0 40 TAGACAATGT ......................... ACCTCTATCCTTATCCACTTTTCATAAATGGGCCGGTTTC 1028654 25 100.0 40 GGCCGGTTTC ......................... TCGCACTGATTATCGAGGAGGGCTTACTCCTATGGTTCAA 1028719 25 100.0 40 TATGGTTCAA ......................... ATATCCCCGGCGGTCGCCCCACGGTATATGAAGCCCTCGG 1028784 25 100.0 38 AAGCCCTCGG ......................... TCCCAGCTGGAGTAGTCATCCAGATGCGGTTTAACCAT 1028847 25 100.0 40 GTTTAACCAT ......................... TTATAGCTAACGCAATACGCTCGCGTCTTTCTTCCACTAG 1028912 25 100.0 36 CTTCCACTAG ......................... CGAATTAAGACGCCTAACCCTCCCCAGAGCCTGAGG 1028973 25 100.0 39 GAGCCTGAGG ......................... CCAACGAGCTAGGCTGGTACGGCATCCATTACAGGGAGA 1029037 25 100.0 40 TACAGGGAGA ......................... CTCTAAGTATGACCTCCTCGGTAGCCCTCTCAATACATGG 1029102 25 100.0 38 CAATACATGG ......................... GTGTAATGCACCATTAAAGCCTGCGTGGTCTTTATGAT 1029165 25 100.0 37 TCTTTATGAT ......................... ACCCAATTGAGGTTTTCACCGCTCACATATCCCTGAA 1029227 25 100.0 40 TATCCCTGAA ......................... CTCGGGTTAGTGTAATTGATGCTGGTTACCTGCTGCAGCG 1029292 25 100.0 41 TGCTGCAGCG ......................... AGAGGATCCCGAGCTACCTGAAGGCGAGAAGATAATCCTAG 1029358 25 100.0 39 ATAATCCTAG ......................... TTTCTTCAGCTCAAAGCCTATATCGTGGTCTAGCACATA 1029422 25 100.0 40 CTAGCACATA ......................... ATACTATCGCATTACTCCAGAAGCTATTTGACACGACTGG 1029487 25 100.0 39 ACACGACTGG ......................... CTATTGCTACTCCACACGCCTCCCCGCTAGTGAACCACG 1029551 25 100.0 38 GTGAACCACG ......................... TAAATTGTTTAAAATGATTATCACTCAACCTCATGGAC 1029614 25 100.0 38 CCTCATGGAC ......................... GTGGGTACGTATATGGTGCTACCATTAGTAAGGTATAT 1029677 25 100.0 38 TAAGGTATAT ......................... TTGCACAGGCGTTTTCCTGCTGCTGTTCTAGTTATGGC 1029740 25 100.0 40 TAGTTATGGC ......................... ATTTTCTGCCTTATCTAGGCTGGCCCGGCTCATTAAACCA 1029805 25 100.0 41 CATTAAACCA ......................... CTGAGGAGATCCCCGCAGAGTCGTGAGTCAAGGGCTTTTAT 1029871 25 100.0 41 GGGCTTTTAT ......................... TTCAGCTGCTGATCAATTCTGCCCGCCCACTTCAATATTGG 1029937 25 100.0 39 TCAATATTGG ......................... ATATTGGCGCCAGACTTATTATATTGAACCTCGTTTAAA 1030001 25 100.0 40 CTCGTTTAAA ......................... GCTCTAACAAGTTGAGCCGGCTGATAGCCTTGCGGTAGCT 1030066 25 100.0 39 TGCGGTAGCT ......................... ATGGATGACTGCTACTGGCAGTACGGCGACTATAGTAGG 1030130 25 100.0 39 CTATAGTAGG ......................... TATAATTATATCGGGAGTGGTTTCGGGTATATATTTTAA 1030194 25 100.0 39 TATATTTTAA ......................... CTAGATCCCTGATCCTTATAGGATCCTAGACTCGTTAAG 1030258 25 100.0 43 ACTCGTTAAG ......................... TAGCTATGTCTTGCAGGGCTTTCTCCGCCTTGCTTAAGCCTAT 1030326 25 100.0 38 TTAAGCCTAT ......................... AAAATGTCGGGCGGGGTATTTAAGCGTTGTGTTTTGTA 1030389 25 100.0 39 GTGTTTTGTA ......................... TTACGATCACCTTGCTTTTCTACTAGTATGAGGTACCCG 1030453 25 100.0 39 GAGGTACCCG ......................... TGCTACCCTTTATCAGCAACGCTAGCTCACGGGCCCACA 1030517 25 100.0 40 CGGGCCCACA ......................... ACGAGCTGGAAGTATACCGTGGTATACCAGGCTCCCGTGA 1030582 25 100.0 39 GCTCCCGTGA ......................... TGGAGACCGTTACCAAGATCAATAGTAGAACTGAGATAG 1030646 25 100.0 39 ACTGAGATAG ......................... GTAACTTATTTTCATTTTCCAGAAGTGGTATTCTACCAT 1030710 25 100.0 39 ATTCTACCAT ......................... TATGGGGTTACAAAAGCTATATGGGATTAAACTGCTGGA 1030774 25 100.0 40 AACTGCTGGA ......................... TGTAGTCAACCCTTGCAACAGGCACAGCCGTGTACACGGT 1030839 25 100.0 39 TGTACACGGT ......................... CTACCATAGGGGTAGCTTATAAACAGCTGTGTAGTGTAC 1030903 25 100.0 38 TGTAGTGTAC ......................... CCAGCTTTTACATATATTTTAAGGTAATGGTATCCGTC 1030966 25 100.0 36 GGTATCCGTC ......................... AAAACATACATATATAGTCAGCAGGCGATATATATA 1031027 25 100.0 38 GATATATATA ......................... ATACTCTCCCTCACAACCGGGACGGGATCCACCATGCA 1031090 25 100.0 41 CCACCATGCA ......................... ACGTAGGAAGGTATTCCAGGATTCCTTTCCCTTATATCTTT 1031156 25 100.0 40 TTATATCTTT ......................... TTAAATTTAAAGGCCTCCAACACTACCGCGTCGCCCGCCA 1031221 25 100.0 42 TCGCCCGCCA ......................... GTCAGCAACGAGGAGCTTCTGCAGCTACTACGCAACTACGAG 1031288 25 100.0 39 CAACTACGAG ......................... TTACTGCCGCCACCTTCTTGCCGTCATACTGCAGTGTGA 1031352 25 100.0 36 TGCAGTGTGA ......................... ATAAGCCTAGTGAGAGAAGCTTCTTCTCACGCTCAT 1031413 25 100.0 39 TCACGCTCAT ......................... CCGTCCTGCTTACACCCGGCTTTGCAGGCCTCCCATATT 1031477 25 100.0 40 CTCCCATATT ......................... CTCACGAATGCCACCGGGTTCAACCCGGCCACAGTGCTGG 1031542 25 100.0 40 ACAGTGCTGG ......................... CCACAGTTATAAAGTGGGGCCTGGTGGCCCCGTTCGGCTA 1031607 25 100.0 41 CGTTCGGCTA ......................... ATATATCCACTCCACTGATTTCACCAAGGGCTCAGGGCTCC 1031673 25 100.0 38 TCAGGGCTCC ......................... AGAACACGGGAAGCGATGGATGGGTTAGGGTAAGGGTT 1031736 25 100.0 40 GGTAAGGGTT ......................... ACGGGTTCCTCCCCTGGCGGCGCCAGCTTAATCCACTCAG 1031801 25 100.0 41 ATCCACTCAG ......................... TGTAAAAGTGCTAAAAGCTAAGTACAACAACTGTAAGGTAA 1031867 25 100.0 40 TGTAAGGTAA ......................... ATAAAATAAGGCGCGCTAGGGGGCTGGCCGGGGGGCGGAG 1031932 25 100.0 38 GGGGGCGGAG ......................... ATTGGGACAGATTTCAAGCCCTATGGTGCCCTCCAAAT 1031995 25 100.0 37 CCCTCCAAAT ......................... CTTCACCGGTGGTGAGGTCAACTATATATGGGCTCGG 1032057 25 100.0 41 ATGGGCTCGG ......................... ATTAGGTAGGATCCACGGCATCCTACCTAGTAGGGACCCCG 1032123 25 100.0 39 AGGGACCCCG ......................... CTGTAACCGTGGTTGAAACATTACCGGCAAGGAGGGTAG 1032187 25 100.0 42 AGGAGGGTAG ......................... GTTTCATATGTCTCCCCTCAATTCTCTAATATGCATTTAGAG 1032254 25 100.0 40 GCATTTAGAG ......................... AGTCTTTTACCGGGTTCAACTTGTTTCATTAATTCACGCA 1032319 25 100.0 40 AATTCACGCA ......................... ACGGCAGCCTCCCGTAGAAAAAGCTGCAGTCTCCCCGTGG 1032384 25 100.0 41 CTCCCCGTGG ......................... TAAAGTAATCCAATACCTCCCGGGGATCTCCCTCTGTGGTG 1032450 25 100.0 40 CTCTGTGGTG ......................... ATTGTCATAGGTAATAGAACTTGAGTGATTATCGGGATGC 1032515 25 96.0 ATCGGGATGC ..............G.......... GGTTTCGGAA ========== ====== ====== ====== ========== ========================= 64 25 39 GCCTCAATGTAAAGAGGATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [290,110] Score: 0.18/0.18 # # Final direction: F [5.09,0 Confidence: HIGH] >NC_014964 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 121660 30 100.0 38 NNNNNNNNNN .............................. AGCTGAAAGACATTTTAAAGTAGCAGGGCAAGGTACAG 121728 30 100.0 37 NNNNNNNNNN .............................. AGTCTATCTTGGCCGACAGGTCTATCCCGATGTAACG 121795 30 100.0 37 NNNNNNNNNN .............................. ACAAAAGCGACATGACAATTACTTGCATGAATGGCAA 121862 30 100.0 36 NNNNNNNNNN .............................. GCAACATTGGCAAATGAGCTCAAGACGAAATTTAAT 121928 30 100.0 35 NNNNNNNNNN .............................. GGCCGTACCTCGGTCCAGGCGATCCGAGGTTGAGG 121993 30 100.0 36 NNNNNNNNNN .............................. ATTTATAATCTACAGATAAAACATAAGTTGTGCCTG 122059 30 100.0 37 NNNNNNNNNN .............................. TGCATTTCCCCACCTTCGCGGTAAAGCTCCACGAACG 122126 30 100.0 36 NNNNNNNNNN .............................. CCAAGAGCGAAGGCAGCGCCAAATGCGCCGGCATTA 122192 30 100.0 36 NNNNNNNNNN .............................. CGAGACCCAGAGCGGCAAGTTTGACATGATCAAGAA 122258 30 100.0 37 NNNNNNNNNN .............................. CGCCGAATTCAGCTGGAAGCATGGGGAGTGGAAGGAG 122325 30 100.0 38 NNNNNNNNNN .............................. ATACTATCACGGCATAAGGCACAAAAGATTGTTTATAT 122393 30 100.0 37 NNNNNNNNNN .............................. AAGTATAATCAAAGCGGATGTGCTGACCCAACAGTTT 122460 30 100.0 36 NNNNNNNNNN .............................. ACGTATAGCTTCAAACTGGCCGTAATTATAGGCAAA 122526 30 100.0 38 NNNNNNNNNN .............................. ATTTTCGACGATATACAGAAACCCACAACAATCCAGAG 122594 30 100.0 36 NNNNNNNNNN .............................. ATTTATTGACATGCGGCATATTCGGATTTGGATGGC 122660 30 100.0 37 NNNNNNNNNN .............................. TTTGCTGGTGCTCCAGAATGGTGCGTCCGGTTCTTTG 122727 30 100.0 38 NNNNNNNNNN .............................. TTGACAATAAAATCGCTTTTTCTGTTCAATATCCTATG 122795 30 100.0 38 NNNNNNNNNN .............................. TGCAAAATTTCAGAAAATTTCAGGAAAGGAGGTATGCG 122863 30 100.0 37 NNNNNNNNNN .............................. TGGGATGGTCGGATAAAAAAATTGCTGAACAATTAGG 122930 30 100.0 36 NNNNNNNNNN .............................. AGATACTTTTTAACTTCTTTATATATTTAATAAAAA 122996 30 100.0 37 NNNNNNNNNN .............................. ACCGATTCTTGTTCCTGCTGATTGTAGCAACATCAAC 123063 30 100.0 37 NNNNNNNNNN .............................. AAACCCGTAGACCGTCATACCGTGAAATCCTCACCGG 123130 30 100.0 36 NNNNNNNNNN .............................. GCCTTTTTGTCTAACACTTGGAATGCTATTAGCACG 123196 30 100.0 37 NNNNNNNNNN .............................. ACACAACTGAGGTGACTGTAAGCCGATGGAAGCAAAG 123263 30 100.0 37 NNNNNNNNNN .............................. GTTTAGGCACATCGTTTTCGCAGTTGCCGTTGCTAAG 123330 30 100.0 37 NNNNNNNNNN .............................. TGAGATTAAGGATTATCTTGTTGCTGACTGGGAGTTA 123397 30 100.0 38 NNNNNNNNNN .............................. ACTCTTGATACTTGATTGCTTCTCTTTCTGCATTCCAA 123465 30 100.0 37 NNNNNNNNNN .............................. CAGCACTCTTCCACCCCGCCGTTGACTAGTACGTTAA 123532 30 100.0 40 NNNNNNNNNN .............................. TAATGATTGATTCTTCTCTGCCGTCTTTATAAAGCACAGG 123602 30 100.0 37 NNNNNNNNNN .............................. AACAACATATTATCAAAATTATGAAATTTCACAAACG 123669 30 100.0 35 NNNNNNNNNN .............................. ACAAGCTCGCCTATCTTTCCACCAGCTGACTGCAT 123734 30 100.0 38 NNNNNNNNNN .............................. AATCCTGGCCCCGGGCAAAGACCACTTCTTCATGCTCC 123802 30 100.0 36 NNNNNNNNNN .............................. TGTAAACGAGGGAAAGGATGAAAAAAAAATGATAAA 123868 30 100.0 36 NNNNNNNNNN .............................. TGATATTTAAGCGCGCGATGTGGAGGGGTCTCGTGG 123934 30 100.0 36 NNNNNNNNNN .............................. CGTGCCTGCAGACTGCAATGCCTACGACGTCATGGA 124000 30 100.0 36 NNNNNNNNNN .............................. AGTACTAAAGATTGAGGAGGTATAAACATGGAAGAG 124066 30 100.0 37 NNNNNNNNNN .............................. CAGCCTGTTGCTTATAATTAAGGTAACAGCAGGTTAG 124133 30 100.0 37 NNNNNNNNNN .............................. AGCTGTTCCTGCAAGGATGCGATGGTTGCAGTTTTTT 124200 30 100.0 38 NNNNNNNNNN .............................. CCACCTTTTTTACCTCAATTAGTTCTATAGTATTAAAG 124268 30 100.0 37 NNNNNNNNNN .............................. AAACTAGTGATGGATATGTTGATTGGCTAAGTATTGA 124335 30 100.0 36 NNNNNNNNNN .............................. TTGCTTTAGCAAGATTGTTATTTTTTAACATATTAC 124401 30 100.0 36 NNNNNNNNNN .............................. GAAAAGCAGTTGGAGGAGGCAAAAGAACATGAAAAG 124467 30 100.0 37 NNNNNNNNNN .............................. CAGTATTGAAACATTAAAAAATAATGCAGAGCTGAAG 124534 30 100.0 37 NNNNNNNNNN .............................. CCTGTAGCACCTTTGTAGTTATCTAAAACCTCAATGG 124601 30 100.0 37 NNNNNNNNNN .............................. TAATATCCTGAAACAAAGAAAAAACGCTGAATCTCAG 124668 30 100.0 38 NNNNNNNNNN .............................. TAGAGCCTTTTAATATTGCAAAGGAAAAGGTGCTTTCG 124736 30 100.0 36 NNNNNNNNNN .............................. ATCGCTTAAATTGTTCTTCTGTTAATTCATTCTCTG 124802 30 100.0 36 NNNNNNNNNN .............................. AGTATTAAAAATTAAGGAGGTTTAAAAAATGGAAAA 124868 30 100.0 1 NNNNNNNNNN .................CCT...AAT.GTG NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 49 30 36 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-1.30,-1.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [38,1633] Score: 0.18/0.18 # # Final direction: F [5.41,0.55 Confidence: HIGH] >NC_014961 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 969467 25 96.0 39 TTCCGAAACC ..........C.............. AAAACTATTTAAAAAACTAGGCTAGAGCGTATTTAACTA 969531 25 92.0 41 TATTTAACTA .C..............T........ TGAACGAGTTGATAAACGCCTATTCATATTATCGTGAACAT 969597 25 100.0 40 TCGTGAACAT ......................... AGGTGCTCAACGCGGGCCCCATTGACCTCGTGGTCGAATA 969662 25 100.0 36 TGGTCGAATA ......................... TCCAGTGGACGCCTTTGGCATCGGTGTAACAATGGT 969723 25 100.0 39 TAACAATGGT ......................... TGGTTCTCCCATTCACATTTAGGACATCGATGAGATACT 969787 25 100.0 40 ATGAGATACT ......................... TTTAGGACATCGATGAGATACTCGAATTCCCCCGTTATAT 969852 25 100.0 39 CCCGTTATAT ......................... CAGCGGAGTGTAGTAAATGGTCAGGGTAATTCATTACGC 969916 25 100.0 41 TTCATTACGC ......................... TCAATGTATAGCCCCTTTCTACTAGTAGTAGCGTCAATGCT 969982 25 100.0 40 CGTCAATGCT ......................... TTCGGCATAGGTGTAATAATGGTTGACCGCAAGGTGTTTG 970047 25 100.0 39 AAGGTGTTTG ......................... CTACGGATTCCAGAGCATTCATCTCCAAGCGTATTACAA 970111 25 100.0 39 CGTATTACAA ......................... GTAATCCCATAGCGATGAAACCGTGAAAAGGTATTCGCT 970175 25 100.0 40 GGTATTCGCT ......................... CTAAAATGGTGTTCAGCGCCAACGCACTACCCGTAACCAG 970240 25 100.0 40 CCGTAACCAG ......................... GCCGAAGGCCTTCAACGCTACGTAAGCGTCAAGCAGCGTG 970305 25 100.0 37 AAGCAGCGTG ......................... TATCGGCCGCAGTGACTACACTGGCGACGGAGGCAGT 970367 25 100.0 39 CGGAGGCAGT ......................... GCTGGATGACCTGAAGGAGCAATTAAGACAAGGGCTAAT 970431 25 100.0 40 AAGGGCTAAT ......................... TTGCGCGAGCTCCAGTTCACCGACCTCGAGATCGAGTTAA 970496 25 100.0 40 ATCGAGTTAA ......................... CGTAGGCCATGTCAAGCATCTTTGCCTCCCTCCTTCACGC 970561 25 100.0 40 TCCTTCACGC ......................... GCCTCCTTATCGCCCTTCGCAGCCTTTATTATCAGCTTCA 970626 25 100.0 39 ATCAGCTTCA ......................... ACTAGAGGAGGCGGAGCGGAAGCTGGGGATAAAGAAGGA 970690 25 100.0 40 TAAAGAAGGA ......................... CGGGGAAGTGGTATGTAGCCGCGGTCTCGTTCAGGTTCGG 970755 25 100.0 40 TCAGGTTCGG ......................... TTGCGCGAGCTGCAGTTCTCGGAGCTGGAGATCGAGTTAA 970820 25 100.0 38 ATCGAGTTAA ......................... CCTATGATAAAAGCGGTGCCAGTATCGACACACCTGCA 970883 25 100.0 39 CACACCTGCA ......................... CGACCAGTGCTAGGAACGCCCGGTATATCATCAGTATAA 970947 25 100.0 38 ATCAGTATAA ......................... GGAGGATGGTGAGCCGGCTGTCTCGGTTGAAGCCTACA 971010 25 100.0 38 GAAGCCTACA ......................... TGTTAGGCACGGCCCTAAGCTACATATTCTACAGGCTA 971073 25 100.0 38 CTACAGGCTA ......................... TGAAGAGGTATCTCACCGATGATTTAATCCTTGGCCGA 971136 25 100.0 39 CCTTGGCCGA ......................... TGAAGCCGTAAAACCCTATATGGTGGTAGCACGGACGAG 971200 25 100.0 38 CACGGACGAG ......................... GTGGGGTGATATATTCTCTGGGCCCTTCGGCAGGCTAT 971263 25 100.0 38 GGCAGGCTAT ......................... CTAGCTCAAACAGCCACTGATACGACTACTACCACAAT 971326 25 100.0 40 CTACCACAAT ......................... TTAAGCGATACGCCCGTTATACCTAACTATGTGTTCCGCC 971391 25 100.0 39 GTGTTCCGCC ......................... CGCCGGCCCCGCGGGATCTGCCCGCCAGCACCGCTAGAT 971455 25 100.0 38 ACCGCTAGAT ......................... CTAGGAGCGATGGTTACATTAGTCAGCTCGAACCGGGC 971518 25 100.0 38 CGAACCGGGC ......................... TGTACCTTTCACAGTTGAAAAAGGAAGGGATAATTAGG 971581 25 100.0 41 GATAATTAGG ......................... CGAGCTACGAGGCCTTCAAAACATTAATGAATTTCCTCCAG 971647 25 100.0 40 TTTCCTCCAG ......................... AGCTTGATAATGCCCATGAGTAGCCTGCCGAAGGGGCCAG 971712 25 100.0 37 AAGGGGCCAG ......................... AAGGCGTTAAGCTGCAGCCCTACAGCACTGGCTACCT 971774 25 100.0 42 CTGGCTACCT ......................... AAGAATTAATCGAGCAGGAATGGCTCAACGAGGAGGAGCTTT 971841 25 100.0 40 GAGGAGCTTT ......................... TTCTACTTCAATGCCGTCAAATTTGTCGTAGAACTAGGCT 971906 25 100.0 40 GAACTAGGCT ......................... AGCAGCCCTACCCCCGTTAAATATGACGTTGAAGCCGTAT 971971 25 100.0 39 GAAGCCGTAT ......................... GAAGAAGCTGCTGCGTCTCATTAAGGAGAAACTTGACGA 972035 25 100.0 39 AACTTGACGA ......................... CTTATCTAACTGTGACTAATACCTATACCGTATATGATA 972099 25 100.0 39 GTATATGATA ......................... TGAACCAGCCCAAACCCAAAACCAAGCCCATAATTGAAT 972163 25 100.0 41 ATAATTGAAT ......................... AAGACTTAGCGGGCTTGACACAGGTTTACCGGTTTAGGCAT 972229 25 100.0 41 GTTTAGGCAT ......................... AGGAAGGGAAGGACCATTGACGGTGGTGGGATTTTGGGTCT 972295 25 100.0 TTTTGGGTCT ......................... ACTTGTCGAA ========== ====== ====== ====== ========== ========================= 45 25 39 CTTTCAATCCTCTTTACATTGAGGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [111,229] Score: 0.18/0.18 # # Final direction: R [0,5.09 Confidence: HIGH] >NC_014962 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3141389 36 100.0 36 NNNNNNNNNN TTA.TGTCATTT.GT..................... GGTGCGCAAGTCGACGCGGGTTAAGCTCCGTCCCAA 3141461 36 100.0 37 NNNNNNNNNN .................................... ACCAAATCGCAGCGGTCACTCGGATCGGCTGCGTCGT 3141534 36 100.0 35 NNNNNNNNNN .................................... CCACGACGACCCATTCGCGCGCGTCAACTGAAACA 3141605 36 100.0 36 NNNNNNNNNN .................................... ATCCAAACCGTTGCGCGCATCCAGGCGGTCACGCGT 3141677 36 100.0 37 NNNNNNNNNN .................................... TTCACCGAGGAGTGAAAAACCTCCAACTCCTCGAGAG 3141750 36 100.0 36 NNNNNNNNNN .................................... CGCCGGCGAGGAGCATGTGCTCCGCATCCTTGCACA 3141822 36 100.0 38 NNNNNNNNNN .................................... GATGAGGCGCCTTACGGAGCGTCCGTCATGTTTGTCGA 3141896 36 100.0 36 NNNNNNNNNN .................................... GGCCGTCGGGCGGGTCGCCATCCGGCAGAACCCGCC 3141968 36 100.0 35 NNNNNNNNNN .................................... CCATCCAGCACATACGATGCGATCGTCGCTGCCAG 3142039 36 100.0 36 NNNNNNNNNN .................................... GCGCGCTCGGATCATCAGGACGACGCATGAACTCAT 3142111 36 100.0 36 NNNNNNNNNN .............T...................... CCACCACCACCACCCGCACTCACTCGTCCCACACCA 3142183 36 100.0 35 NNNNNNNNNN .................................... GTCGAAGTGTCATACGCCTTGCTCTACACGGAGCG 3142254 36 100.0 37 NNNNNNNNNN .................................... GAAAGAGGTTCTCGACCAATCGTCGGACGCGATTCGC 3142327 36 100.0 37 NNNNNNNNNN .................................... GGTTGAGAGTCGCGCCCTTTTTTCAGTCCCCCCCCTC 3142400 36 100.0 36 NNNNNNNNNN .................................... GACATGCCCGGCGACCTTCTCGACACGGGCGACGTG 3142472 36 100.0 37 NNNNNNNNNN .................................... CGAGCATTTCAGAAGGCTCAGGAGTCGCTTGCAATTG 3142545 36 100.0 35 NNNNNNNNNN .................................... GCCAAAGAGATGATCGAGGAGATCAAGGCCGCGAA 3142616 36 100.0 36 NNNNNNNNNN .................................... AGGAGTGGATGCGTGACGGACGCTTCCTCCTCGGTG 3142688 36 100.0 37 NNNNNNNNNN .................................... CCGACGCCTTGAAGAAGTGACAAACACGCGTTGCCGT 3142761 36 100.0 35 NNNNNNNNNN .................................... CGACGCGCAGTACGCAGCTAAAAGGGTTTTTCACC 3142832 36 100.0 36 NNNNNNNNNN .................................... GAGGGCTGAAAGGAGGGTTTGTATTTGGCCATGATG 3142904 36 100.0 37 NNNNNNNNNN .................................... CCCCCGGTGCGGCGGGGTGGGGTCAGTCTACGTTGAT 3142977 36 100.0 37 NNNNNNNNNN .................................... ACGAAAGCCAATAACGCCGAGTCGAATCATCGGCGTC 3143050 36 100.0 36 NNNNNNNNNN .................................... TCCGCTTCAGCTTGTCGAACTCCGCTTCGTTCGGCT 3143122 36 100.0 37 NNNNNNNNNN .................................... TTCTTGTTCAAGGAGGCGGGAGGTTCTCGTTCGACGT 3143195 36 100.0 37 NNNNNNNNNN .................................... CTCGGACGCTCACGACGTCGCGCGCCCCGGCCAGAGC 3143268 36 100.0 36 NNNNNNNNNN .................................... AAATCAGACAAGGATTCGGCGTCATCGTCAGAGGTC 3143340 36 100.0 36 NNNNNNNNNN .................................... CAAGCAAGCTGACTCTACCCGGCTCCGCACCCACTT 3143412 36 100.0 36 NNNNNNNNNN .................................... AACCTAAGGAGGCGAATCCTTATGAACACCGTATGC 3143484 36 100.0 35 NNNNNNNNNN .................................... CGCCGCCGCCGGTCGCGGGCTGGTCGGCTCACGAG 3143555 36 100.0 37 NNNNNNNNNN .................................... TGAACTCTATCGGCGCGGCCTCACCTTCAAGATCAAG 3143628 36 100.0 35 NNNNNNNNNN .................................... GTTCTTGGCGACTTCTCCAGTGCTGAGGCGGAAGC 3143699 36 100.0 37 NNNNNNNNNN .................................... ATCGTCGATCAGATCATCGAAGCTTGGGAGCATGAGG 3143772 36 100.0 38 NNNNNNNNNN .................................... CTTCCTTCGGGCGGCTTATCGGTCAAGAACTTGTCCAA 3143846 36 100.0 38 NNNNNNNNNN .................................... GACCCCTTCGCCTTCAATCGTCGTTCTTGCCACCCGAG 3143920 36 100.0 40 NNNNNNNNNN .................................... TGAGGCTTCCGGTTGCCAAGGCGCGTGTGAGCTTGAGGGT 3143996 36 100.0 35 NNNNNNNNNN .................................... CCCTTTGGCGCAGTCAGCCTGCGCATCGCGTCGCC 3144067 36 100.0 35 NNNNNNNNNN .................................... TCAGGCCAAGAATGATGAGCTTCTCTGAAACAATG 3144138 36 100.0 35 NNNNNNNNNN .................................... ATCCCATCTCCAAACTGATGAGCATGCTCAGAAAG 3144209 36 100.0 36 NNNNNNNNNN .................................... CGGAGCGGTTGGTTCGGGATGTGCAGCAGCGCGGCG 3144281 36 100.0 36 NNNNNNNNNN .................................... GTTACGGAAATCATCATGCGTGTGGCAGTTTGGATT 3144353 36 100.0 35 NNNNNNNNNN .................................... TTGGAGGCCGCGATGATGGGCGAGCCATGAACGGT 3144424 36 100.0 35 NNNNNNNNNN .................................... CAATGGGATCTGGTTCTCGATGCAAAGCTCACCCT 3144495 36 100.0 36 NNNNNNNNNN .................................... GGCAAGCGTCTCGGTCGACTCCCACCGCGTGCCGGG 3144567 36 100.0 35 NNNNNNNNNN .................................... GGGGTTGGGGATCACGACGGCGGCATGACCAAACG 3144638 36 100.0 37 NNNNNNNNNN .................................... TGTCCGGGATGAACCGAATCTCAACGCGACGTCCGTA 3144711 36 100.0 40 NNNNNNNNNN .................................... GAGTCGCGTTGCGAAAGACCGCGTCGCATTGTTCGGGGCC 3144787 36 100.0 38 NNNNNNNNNN .................................... TGTTTTGGTGTGCCAAGTTTTGGTCTGCCAAAATGACC 3144861 36 100.0 36 NNNNNNNNNN .................................... CCAAGTCCACCCCGCCACGGCAAGGCATGTCAAAAT 3144933 36 100.0 37 NNNNNNNNNN .................................... GTAAGGATTGACGTTATAAAAATTGACTAACGTTTTC 3145006 36 100.0 41 NNNNNNNNNN .................................... CGTGCAGGTCACGGGTGTTCTCAATGAGCAGCCTCTGGAGT 3145083 36 100.0 38 NNNNNNNNNN .................................... GTCGAACGCCCGAAACGGCAAAATCACGGTCGATGGCC 3145157 36 100.0 37 NNNNNNNNNN .................................... CACGTTTTTCCGCAATCTGTCCATCGCGCGAGGAGTT 3145230 36 100.0 37 NNNNNNNNNN .................................... CACGTTTTTCCGCAATCTGTCCATCGCGCGAGGAGTT 3145303 36 100.0 37 NNNNNNNNNN .................................... CTCTTTTCCGCCCGGCATGACGACCTTCACGAAACAC 3145376 36 100.0 36 NNNNNNNNNN .................................... GCTCCAATCCCGAACGAACCCAAGGAGAGGCGTGGG 3145448 36 100.0 36 NNNNNNNNNN .................................... CGACTCCGAGACACCGTGAGTCAGAACGACCGACCC 3145520 36 100.0 37 NNNNNNNNNN .................................... GACATGGATCGGACCATACTCACTCGTCCTTACCATC 3145593 36 100.0 37 NNNNNNNNNN .................................... AGCGCGCAGTCTTTGCCCAGCGACACGACGATGCCGT 3145666 36 100.0 36 NNNNNNNNNN .................................... GAGGTCGTCGTAATTCTCATGGGGAGACGCTGAAGA 3145738 36 100.0 35 NNNNNNNNNN .................................... TTTCCAAAGTCAGGTAACAAGAAATCAGAGAACAA 3145809 36 100.0 37 NNNNNNNNNN .................................... CGGGGGCGGCTTCGTTTTTGAGAAATCACGAGACCGC 3145882 36 100.0 35 NNNNNNNNNN .................................... TCGCGCAAGTTGTGATAGGCGTCGGGCTTGGTGTC 3145953 36 100.0 36 NNNNNNNNNN .................................... GCAGCGCATCCACCCCGGCCACCATGTCCTCACCTG 3146025 36 100.0 36 NNNNNNNNNN .................................... TCAATTTCAAAGCACGGCACCAAAGGAACCGCGTCG 3146097 36 100.0 39 NNNNNNNNNN .................................... GTCCAAGGGCCTCTTCGGGGGGACGCCGGTTCGGCCAAC 3146172 36 100.0 35 NNNNNNNNNN .................................... GAGATGGGGGAGGACGCGATCACAATCAACTACCC 3146243 36 100.0 32 NNNNNNNNNN .................................... GCGGCTCAACAAAAAGGAGTCTTATTGCATGA 3146311 36 100.0 40 NNNNNNNNNN .................................... TACGTCACCGTTCCGTCCGATCTATCCCACTTCCGTCGCA 3146387 36 100.0 35 NNNNNNNNNN .................................... GCGGAGCTCGACGCGATCAAGACGCGGTTCGATCG 3146458 36 100.0 38 NNNNNNNNNN .................................... AGGTAGAGCACCGCCAACGCACGCCGGTGACCCGACTC 3146532 36 100.0 37 NNNNNNNNNN .................................... ATCCTTTCTGTTGAGAGGAACAACGTGTTCTTCTCAA 3146605 36 100.0 38 NNNNNNNNNN .................................... GAACGCAACCGTGACTGCCGACGGCATCGGCACCCCCA 3146679 36 100.0 36 NNNNNNNNNN .................................... CCATCGAAATGACCCACAGTTCATCCAAATCGACGT 3146751 36 100.0 38 NNNNNNNNNN .................................... ATGACGCCAGCGTTGTGGCGGCGATTCCGGCTTTTGTC 3146825 36 100.0 36 NNNNNNNNNN .................................... GGGACGAAACTTGAACATGACGAATAATTTCCGCCA 3146897 36 100.0 36 NNNNNNNNNN .................................... TCGAGCCGCACCACCCGAATCAACCTTGCGAGCGGA 3146969 36 100.0 37 NNNNNNNNNN .................................... CGTCAATCATGAGCGATGTCCCGAACGCCTTCTGGTC 3147042 36 100.0 36 NNNNNNNNNN .................................... AAGATGGTTCAAGTTGAGGTTCTCACTCACGGGACG 3147114 36 100.0 36 NNNNNNNNNN .................................... AAGGCTCAATCGCGTCACGTATCAACACGAAAAACA 3147186 36 100.0 35 NNNNNNNNNN .................................... TGAACATAGCCGGTATCAAGGAAGCTCTCGCCTTT 3147257 36 100.0 37 NNNNNNNNNN .................................... GAACCAGAAATCGATCGGGTCCGCTGCGCATCCGATG 3147330 36 100.0 37 NNNNNNNNNN .................................... TCACCGATCGGCACGAATCTCGACCCCGAAAGGGCAG 3147403 36 100.0 36 NNNNNNNNNN .................................... ACGAGGTCAAATCCTTGTCCCGTCTCGTCACCTGAA 3147475 36 100.0 37 NNNNNNNNNN .................................... CCTTTTCGGGATTCAAAGAGAACTCAATCACGATGCG 3147548 36 100.0 35 NNNNNNNNNN .................................... ATCCGGCTCCATGCCGGGTTCAGGCGGCTTGGGTT 3147619 36 100.0 36 NNNNNNNNNN .................................... GCTCAATGCTCGTTCGGAAGAGAAACAGCTTCGCCG 3147691 36 100.0 35 NNNNNNNNNN .................................... AACCACGATGTCCTTGAGTTCAGGAGCCGTGTTGA 3147762 36 100.0 37 NNNNNNNNNN .................................... GCCCTCGCAGCGAGAGGGAGACACACAGCCCGTCTTG 3147835 36 100.0 35 NNNNNNNNNN .................................... CAAAGACTCCATGTTCTTCGCGTGGTTTTCGGCGG 3147906 36 100.0 37 NNNNNNNNNN .................................... GCTCTCACGTCTCGGTGGAACCTGCTGCGTTATCCGA 3147979 36 100.0 37 NNNNNNNNNN .................................... CTTGCCCGCAACCAGCAAACCGTAACCGATGGCAACC 3148052 36 100.0 38 NNNNNNNNNN .................................... CAGTTACGAGGAATCGGGCGTCGCCGCCACAAAGACGA 3148126 36 100.0 35 NNNNNNNNNN .................................... CGGCTCGGGCTTGAGATTCGAGACCGCGTGGCCAT 3148197 36 100.0 38 NNNNNNNNNN .................................... TTGGTGACAGTACTCACATCGCCACTGAGAATCCGCCG 3148271 36 100.0 36 NNNNNNNNNN .................................... CCCTCGAAGAGTTCGGGGTTTTCCACTCCCCCTCGG 3148343 36 100.0 38 NNNNNNNNNN .................................... CTCTCCCACCGGTGATGAAGGACGGGCGCCACGTCCTC 3148417 36 100.0 36 NNNNNNNNNN .................................... AAGGCCGTCGCCATCGTACCAGACCAACGGAACGCC 3148489 36 100.0 38 NNNNNNNNNN .................................... CTTGTGGAGCGACTCCTCGTCACCCTGTCCCAAGTCGA 3148563 36 100.0 37 NNNNNNNNNN .................................... AGAAGAAATCGATGCGGCCCAAGCCAAGCTCAGCCAG 3148636 36 100.0 37 NNNNNNNNNN .................................... ATTGCCTAACTCCACGCTCATCTCCGCACGGATGAGC 3148709 36 100.0 36 NNNNNNNNNN .................................... AACAAGTTGGGATCTTGGTAGTAACGGTTGGCAATC 3148781 36 100.0 37 NNNNNNNNNN .................................... GCATGGATTGCGGGACGACCCGTGGGGGTCTCACCGC 3148854 36 100.0 37 NNNNNNNNNN .................................... GGGGAGACAAGCCCGTCTCGACCTCAAACCAAATTTG 3148927 36 100.0 36 NNNNNNNNNN .................................... GAGACCGGCGACACGACGGGTTGCCGGACCAGTCAC 3148999 36 100.0 34 NNNNNNNNNN .................................... CTGGTCCGGTCTATGCCCGGTCGTCATCTGTGCC 3149069 36 100.0 35 NNNNNNNNNN .................................... ATCCCTCCGCGACGAACATTTCCTCAGCTCGCCTT 3149140 36 100.0 40 NNNNNNNNNN .................................... GAGGGGAGGGCGCCGGGCACGGTTCTTTTCGTGTCCTGCC 3149216 36 100.0 36 NNNNNNNNNN .................................... TCGATTTGCGCCAAGCTCATCGGCCTGTTCGCCAAC 3149288 36 100.0 36 NNNNNNNNNN .................................... CCCACGGTTCGCCCCAGGAGAGCCGTCCCTTGGAGG 3149360 36 100.0 37 NNNNNNNNNN .................................... CCCTAAGAAGAAGTTACACTGGCCCGACTTCGACGGG 3149433 36 100.0 37 NNNNNNNNNN .................................... CATCACGCGATGCCGCGTCCCATGTCATCCCGACGAC 3149506 36 100.0 36 NNNNNNNNNN .................................... GCTCCTCGGGGGGGCGCTCCCAAGAATTCGATCGCA 3149578 36 100.0 36 NNNNNNNNNN .................................... TGCTGAAGACGCGTTGGCCTCATCTTTATCAAGATC 3149650 36 100.0 36 NNNNNNNNNN .................................... TGCGCGCTAATGGCCACGATCTGGGAATTGTGTCGC 3149722 36 100.0 38 NNNNNNNNNN .................................... CTCGATATTGGCCGTGCTATTGGCGCCGCCCGCCATCT 3149796 36 100.0 36 NNNNNNNNNN .................................... TTTGAATGCGTTGGTGAACCGTGCCGGCATCGATCA 3149868 36 100.0 36 NNNNNNNNNN .................................... GTGGCCTTGTTGACTGATGGTGGTTGTGGTCACACA 3149940 36 100.0 35 NNNNNNNNNN .................................... GGCCAGCCCGCGGCCGGTGACGTGTGGACAGCGAG 3150011 36 100.0 37 NNNNNNNNNN .................................... CGTTCTGGTGGGGTTCCCGTGTAAGCTCGGAACACTT 3150084 36 100.0 35 NNNNNNNNNN .................................... GCGCCCAGACGCCAAGCGACCCAGGTGCGTTCCGC 3150155 36 100.0 36 NNNNNNNNNN .................................... GGCGGGTGCCAATTCGTTTGTGATGCAGGTTCTAAG 3150227 36 100.0 37 NNNNNNNNNN .................................... GTGAGCAGATCATGATGCTGGCGTGCGAACGCCCCAA 3150300 36 100.0 35 NNNNNNNNNN .................................... AGGGTCGCCCCGGCGGCTGGGGTTCCGACTGTCGC 3150371 36 100.0 36 NNNNNNNNNN .................................... GCGTTGGCCGCGATCTTCGACGCGGTAATCGCCCCG 3150443 36 100.0 37 NNNNNNNNNN .................................... GGCCGGGGAGACGTTTCTCCCCACATCCCTCCGCGAC 3150516 36 100.0 40 NNNNNNNNNN .................................... GAGATTTGGGGCGGTTCCGTGCAGTCCATCTGGCCCTCGG 3150592 36 100.0 36 NNNNNNNNNN .................................... CGCGCCTCGCGGCTTCTCCATGCGCATCCGAGTCTC 3150664 36 100.0 35 NNNNNNNNNN .................................... GACAACGATCGGGCGATCATTCCGCCCTTCGTACA 3150735 36 100.0 37 NNNNNNNNNN .................................... CCATATCACGCCGGATGGTCAGTACGGGAGCTTGATC 3150808 36 100.0 36 NNNNNNNNNN .................................... CCATCATAGATCCGTTCAAGTTCGTCAAGAACGAGA 3150880 36 100.0 36 NNNNNNNNNN .................................... GGCCGAGAGCCGTCCCGACATAGCCTCGAATGCAGG 3150952 36 100.0 35 NNNNNNNNNN .................................... CACTTTGGCGACGACGAAACCGCTGTCCCATGCAT 3151023 36 100.0 35 NNNNNNNNNN .................................... CATTGCCTTGATGAGAATGCCGCGGCCATTTTTGG 3151094 36 100.0 35 NNNNNNNNNN .................................... ATTGATGAGATGGCGTCCAGATACCATGCGTCAAA 3151165 36 100.0 36 NNNNNNNNNN .................................... CTTGGCGGCGATCGCTACAATTGCCGCCCAGATTTT 3151237 36 100.0 35 NNNNNNNNNN .................................... ATCCTGTTGAAGCTCATGTCTCTTTTGATGAGAGC 3151308 36 100.0 37 NNNNNNNNNN .................................... GATCATGTTACTACTTAATTTCGGCCACCCGTTCACC 3151381 36 100.0 38 NNNNNNNNNN .................................... GGCGCGCAGTTCTGAGGCAAGAGGCAGCATCATGCCAT 3151455 36 100.0 36 NNNNNNNNNN .................................... CCCGACTTCTCCACGACATGCGCCTTGGTTCATGAA 3151527 36 100.0 37 NNNNNNNNNN .................................... TGGGCCAACCGGAACCATCCAGCTGAAATTCATCCGC 3151600 36 100.0 38 NNNNNNNNNN .................................... GTCCAGAACGCTGAGAAAACGAACTCGTCTGTTTTGAG 3151674 36 100.0 35 NNNNNNNNNN .................................... TCACTTTGATCTTGCCAAAAGCCAAGGGATCGTCG 3151745 36 100.0 38 NNNNNNNNNN .................................... TCTTCGAACAACACGGGTATGCCTTCGACAGGCGCGGC 3151819 36 100.0 39 NNNNNNNNNN .................................... GTCATCTCAATCCCATCTCCAAAAAAAGCCGCTTCGGTT 3151894 36 100.0 37 NNNNNNNNNN .................................... CACCTACGATGACGCCAACGACGAACTGATACCACCT 3151967 36 100.0 38 NNNNNNNNNN .................................... GACCTGGCTCTCCATTGAAAAGTTCGACGAACTTGGTC 3152041 36 100.0 37 NNNNNNNNNN .................................... AGGCGTCGACCGCCTTCATGACCGGGTCGAAGAAAAG 3152114 36 100.0 39 NNNNNNNNNN .................................... AGGCGTGTTGTTTTGCGCCTCACGTCACACTCCGTTCTG 3152189 36 100.0 39 NNNNNNNNNN .................................... GCTCGCGGACGAGTTTTGGACCAATCTCAAGCAGTCGAA 3152264 36 100.0 36 NNNNNNNNNN .................................... AATCGTCTTCCAATTCCGACTCCTCTTCCTCTGGGA 3152336 36 100.0 34 NNNNNNNNNN .................................... AACCTCTCGCATTACATCAGACCAAGCATGAACG 3152406 36 100.0 37 NNNNNNNNNN .................................... GATCAAAAACGCGTTCCTCAAGGGGATTGCCAAGGTT 3152479 36 100.0 35 NNNNNNNNNN .................................... TTGGTGGGCAGCAAGAAAGGGGAGGGGGTTGACCT 3152550 36 100.0 36 NNNNNNNNNN .................................... CTCTATTGTCTGGCCGCCCTTTTCGGGCGGAACGAT 3152622 36 100.0 35 NNNNNNNNNN .................................... TCCCCGCCCCCGCCGCACCGGGGGTTCACCCATCA 3152693 36 100.0 39 NNNNNNNNNN .................................... TCGCCAAGGTCAAGTTGGCCATGTCCTCACACCAAACTT 3152768 36 100.0 35 NNNNNNNNNN .................................... TTTAGGGGTCCGCTTTCGGAGACGGGTTCCTCAGA 3152839 36 100.0 37 NNNNNNNNNN .................................... ACGAGGCGAATCGGTTCGACACTTGATTGAGGTGGTC 3152912 36 100.0 37 NNNNNNNNNN .................................... GCCCGAAAAACGGGTCGATTTCCGATTGCCCGAGCCT 3152985 36 100.0 36 NNNNNNNNNN .................................... GCCAGCACTGCGACCACCAAACCAATCCCATTCAAC 3153057 36 100.0 35 NNNNNNNNNN .................................... AAAGACGCCTACGACAAGATCGTGTCCGATAGGAA 3153128 36 100.0 35 NNNNNNNNNN .................................... GACCCAAATGGCAAACAGTCGGTCGAGGAACATCG 3153199 36 100.0 38 NNNNNNNNNN .................................... CAGTCGAATTCCACAACGTTGCCCAATGGAGCTGAACC 3153273 36 100.0 36 NNNNNNNNNN .................................... TTGGTTTGGTGGTCGCAGTGCTGGCCATCACGTGAT 3153345 36 100.0 36 NNNNNNNNNN .................................... CTCACCGCTTTTTTGAACAAGTCGGGCAACTGAGTC 3153417 36 100.0 35 NNNNNNNNNN .................................... TGCCACCCCAACCACCAACCGACCAATTCGAGATT 3153488 36 100.0 37 NNNNNNNNNN .................................... GAGCCAAAGCTTCGGCGGACAACAAGAAATACAACGA 3153561 36 100.0 37 NNNNNNNNNN .................................... TTCAGTGCACGTGGAGTCAGGCGAGGGTCGGATCCAG 3153634 36 100.0 39 NNNNNNNNNN .................................... GGCCGATGCGCTGTCACGCAACCATGCGACGTCTGCCAA 3153709 36 100.0 37 NNNNNNNNNN .................................... GGTCCAAGCACAAGAGAAGGCGTCCCACGCGACCAGT 3153782 36 100.0 35 NNNNNNNNNN .................................... TCGCCGCCATCCGCTCACCAAACATTACTCCGTCG 3153853 36 100.0 36 NNNNNNNNNN .................................... CCCCCGGTCACTTCCACGCGGGAAGGCCGGGGGCGG 3153925 36 100.0 37 NNNNNNNNNN .................................... TCGTGAAAAATCAGTCGTTGCAGCCTGGGCAAAGCGG 3153998 36 100.0 36 NNNNNNNNNN .................................... CGCCGGAAGGCGGTCTCCAGCATGTGGTCAAAATCG 3154070 36 100.0 36 NNNNNNNNNN .................................... ATCGGATCAGCAATCGTCTTCGTCTCCGTCCCCCAA 3154142 36 100.0 37 NNNNNNNNNN .................................... ATCGCAGACGACTGCTCGACCGGATCGCGGATGGTTA 3154215 36 100.0 35 NNNNNNNNNN .................................... GACCGGGACGAACGGGGCTGGTTGCTGCGTCATGG 3154286 36 100.0 37 NNNNNNNNNN .................................... TCGCGGAATGATATCGCTAGGTTTCGGCATCCAACTC 3154359 36 100.0 35 NNNNNNNNNN .................................... GAGGTGTCCTACGCCCTTCTGTACGAAGGGCGAAA 3154430 36 100.0 35 NNNNNNNNNN .................................... TGCCGCCGCCTCTTCTTCACGTTTGCGAATGCGAG 3154501 36 100.0 36 NNNNNNNNNN .................................... GAGGAGGTCGAGCGCCTCGAGCGGCTTGCTGAGGCT 3154573 36 100.0 38 NNNNNNNNNN .................................... AGCTGCGTTATCCACGATCTTCAGTAGGAGCTCCTCAG 3154647 36 100.0 37 NNNNNNNNNN .................................... GCAGTACGAGATCATGCATCAGCTGGAGGTTGCATTT 3154720 36 100.0 37 NNNNNNNNNN .................................... GCAGAATCGCGTGACGAACTCACGTTCGTAACGCACG 3154793 36 100.0 37 NNNNNNNNNN .................................... GCGTTATTGGAGTACGGAACATCCTCGATTTCGATTC 3154866 36 100.0 37 NNNNNNNNNN .................................... CGTCCTTGTCAGGCTCGGTCGTCGTCCGGGTGCGCAG 3154939 36 100.0 36 NNNNNNNNNN .................................... CTCAGCCACCGATCGATCTTGGTCGATTGAGAACGT 3155011 36 100.0 39 NNNNNNNNNN .................................... GGTGGCTCGTCTTGGGGGACGATTTCCGCCGCAACCGTG 3155086 36 100.0 36 NNNNNNNNNN .................................... CGCTCGCCAAGAAATCGGGACATTTTCCAGATCATC 3155158 36 100.0 37 NNNNNNNNNN .................................... GCGACCACCGCCGGCTCCGCAAGGCACTTGCCGAAGC 3155231 36 100.0 35 NNNNNNNNNN .................................... AACCGAAGGCACCACATGGACCCGGACAACGTTTG 3155302 36 100.0 35 NNNNNNNNNN .................................... CCGCCAATCCTCGGGCAAAAGCGTGCGAAGTCGCT 3155373 36 100.0 35 NNNNNNNNNN .................................... AGCTGTCAGCGCGAGTTCTTTCCGGCCCACGCCGG 3155444 36 100.0 36 NNNNNNNNNN .................................... GTGCTGCCGACCATGATCATCATGGTCAGCAGCAAC 3155516 36 100.0 36 NNNNNNNNNN .................................... CCTGCAGCATCGCACCCAAAGATGCTTTGTTGTTTT 3155588 36 100.0 38 NNNNNNNNNN .................................... CGCGGTGGGAAAACGTCCCGCACCTACCGGGTCGCGTG 3155662 36 100.0 37 NNNNNNNNNN .................................... TGGGATCCTGCTGGCGATTCGCCGCCATCCGCTCACC 3155735 36 100.0 38 NNNNNNNNNN .................................... ATGGTCGCCTGTTTCAGCGGGTGTGAGGTTGCGTGCCA 3155809 36 100.0 36 NNNNNNNNNN .................................... TCGCATCGACGCTGCTTCGGACATCGACACTGCTTC 3155881 36 100.0 36 NNNNNNNNNN .................................... AGCGGCTCCAAGGTTGTGAGCGACCGCCCCCTCAGC 3155953 36 100.0 36 NNNNNNNNNN .................................... CGTCGGCGAAGAGTGCGTGCTCCGTATTCTTGAGCA 3156025 36 100.0 35 NNNNNNNNNN .................................... GTGGATCCGGGGTGGAGTTCGGGCGGGCCAGGCTC 3156096 36 100.0 38 NNNNNNNNNN .................................... ACGGTCGCCGCGGAGACGAACCAAGCCGCGGACACGGT 3156170 36 100.0 36 NNNNNNNNNN .................................... AAAAACGACACTGGGAACAATCCGTTTTTTTTTCGA 3156242 36 100.0 37 NNNNNNNNNN .................................... ACGCTTCGGGATGGTCCGCCTGCGCCGCCACCTTGCA 3156315 36 100.0 35 NNNNNNNNNN .................................... GCTGATGGATCAACACCCGTGAAGACGTCACCCTC 3156386 36 100.0 35 NNNNNNNNNN .................................... GGCTGTGAGGCTGGCAACCTGAAAATGATCCCATT 3156457 36 100.0 36 NNNNNNNNNN .................................... CGACCACTCGGGCGTCTCGACCACGGGCCGCCAAAT 3156529 36 100.0 35 NNNNNNNNNN .................................... GGCGGTTACTGACAATACCATTGACAGTTTCTCAC 3156600 36 100.0 37 NNNNNNNNNN .................................... GAGATACGCCAACGCCAACTCAAACGCAGGCCAAGCG 3156673 36 100.0 36 NNNNNNNNNN .................................... ACCTGTTCGGCCATCTCGGAAACCGTCCGCTCCTTC 3156745 36 100.0 35 NNNNNNNNNN .................................... TAGGTCGCGTGCCATATATGTCGCGTCTTTGACAT 3156816 36 100.0 38 NNNNNNNNNN .................................... CGTTGCGATCTGAGCCGCTCCAATCGCATTGGCCGCAA 3156890 36 100.0 35 NNNNNNNNNN .................................... GAGTCGTTCCGGTTGAGAAGGGGAGCGGACTCCCG 3156961 36 100.0 38 NNNNNNNNNN .................................... AAAAAACCCCTCTCCCAAACCTCGGTCTCGACAGATTC 3157035 36 100.0 35 NNNNNNNNNN ......................A............. ATCCCCTGAATGGCGGGTCGGGACGCACACACGCG 3157106 36 100.0 35 NNNNNNNNNN .................................... GTCGGGTTCATGCGCGACAAGCTGCGCATGAACAG 3157177 36 100.0 36 NNNNNNNNNN .................................... ATCCTCATTGATCGACTGCTCAGCTTTGCTTACCCC 3157249 36 100.0 36 NNNNNNNNNN .................................... TGCTGCAAACCCTAACTTTTGGCGCATTTGTGGTGG 3157321 36 100.0 37 NNNNNNNNNN .................................... AAGTCATTCATGGGAGCGCCCCTGTGAATGTTCCTGA 3157394 36 100.0 36 NNNNNNNNNN .................................... AAATCATCGTCGCCAAAAATCGACATGGGCCAACCG 3157466 36 100.0 37 NNNNNNNNNN .................................... TGCGTTGAGACGCCGAGCGCAGCAGACAGAAGAGCAA 3157539 36 100.0 37 NNNNNNNNNN .................................... ACCGGCATCCTCGACCATATCGGCGAAGATGCGGACA 3157612 36 100.0 36 NNNNNNNNNN .................................... ATGACGCGCAGTGACGGGAAAATCACCATCTCGGCC 3157684 36 100.0 35 NNNNNNNNNN .................................... ATCGCCACGGGATCATTCCCGTGGCGATATGCTTT 3157755 36 100.0 38 NNNNNNNNNN .................................... GGGACGATGGCATACGCGACATTCTCCACTTTCACGGG 3157829 36 100.0 38 NNNNNNNNNN .................................... TCCTAACGGTTTTGGCCCCGTGGGCTTTTCGCCGCGAG 3157903 36 100.0 36 NNNNNNNNNN .................................... ATTGAAAAAATGGTTATGCGGAATCCGTCGATGCGC 3157975 36 100.0 35 NNNNNNNNNN .................................... AAATTTCGACGGCCGCCGACAACGAAGAGGGCATG 3158046 36 100.0 37 NNNNNNNNNN .................................... TGCTTGACTGCGTCCAAAGCTTCCGCCACGCGATCCT 3158119 36 100.0 34 NNNNNNNNNN .................................... TTATCACGCTCAAGTTTCCTTGTCAAATCAGAAA 3158189 36 100.0 37 NNNNNNNNNN .................................... GCGAGCTGCGTTGAGACGGCGAGCGCATGCTCAGACA 3158262 36 100.0 35 NNNNNNNNNN .................................... GGCTCTTGATTGTCCGCCATTAGGAACCTCCCTGA 3158333 36 100.0 36 NNNNNNNNNN .................................... CGTTTGTGATGATCGAGATCATTGTTTTAATGACAA 3158405 36 100.0 36 NNNNNNNNNN .................................... TTCCAAACGAGATCGCCCCAGCCTCCGCCCCGAACC 3158477 36 100.0 42 NNNNNNNNNN .................................... GACGCCGAATCCTTGTCTGATTTGAGTTGAGGTTCCCGACTC 3158555 36 100.0 37 NNNNNNNNNN .................................... TCATTGTGCCGCCCGAGAAGGGCGGCCAAATGGTCGC 3158628 36 100.0 35 NNNNNNNNNN .................................... GATTGGAAGGAAATTGGTCAAGCGCGGATTGGCCA 3158699 36 100.0 37 NNNNNNNNNN .................................... TCGGGGTCATGATCACGAGCTTCGGGTTGCCGACCAA 3158772 36 100.0 37 NNNNNNNNNN .................................... GTTGGGCTGGTCGTCCGGATCCGCCCCCCATCTCGTT 3158845 36 100.0 37 NNNNNNNNNN .................................... GTCATGGACGTTCACGACATCGAGTTGATGTTGAACC 3158918 36 100.0 36 NNNNNNNNNN .................................... AGCCTGTCTTGGACGATGGTCAAATCGACCTCTCCA 3158990 36 100.0 36 NNNNNNNNNN .................................... GGCAAGACGTTGGAGCAACAGGATGTGCGGTGGGGT 3159062 36 100.0 36 NNNNNNNNNN .................................... AATGGCTACGAAGTTCAGCATGGCGAGTATATCTAT 3159134 36 100.0 38 NNNNNNNNNN .................................... CCCGAACTCCACCACCACCACCCGCACTCGTCTTACAC 3159208 36 100.0 36 NNNNNNNNNN .................................... AAGGCGCGTCGAAGGAACTTCGTCGTCGCGTCGTGC 3159280 36 100.0 36 NNNNNNNNNN .................................... AAGGCGGGCGTGGCTTGATCGTCGAACTCCAAAAGA 3159352 36 100.0 36 NNNNNNNNNN .................................... TCGCCACCCCGTAATGACCCACCTTGCCAATGGAAA 3159424 36 100.0 35 NNNNNNNNNN .................................... GAGCGTTCGCCAAGGAGGAAGATCATGTTACTTCT 3159495 36 100.0 36 NNNNNNNNNN .................................... GGAAGTGTTCCACTCCGTCGTGGAGACCCCGCATTT 3159567 36 100.0 39 NNNNNNNNNN .................................... GATCAACTGGACGCGGTCGGGTTCTCCGAGTCCGCTCGC 3159642 36 100.0 38 NNNNNNNNNN .................................... GCGCGACGCCCCTGCCCGCCCAAGATGACCTCCCGTTT 3159716 36 100.0 36 NNNNNNNNNN .................................... TGGTCCGGCAAAACAAGGCGCGGGGTGTCTAGCCCC 3159788 36 100.0 37 NNNNNNNNNN .................................... ACGGTGTTTTGTTTTGCCTTCCCGAGCAGGCGGAACA 3159861 36 100.0 38 NNNNNNNNNN .................................... TCCGCAACGCCACGTCGAATTCTTTCAACTCCAGCGTG 3159935 36 100.0 36 NNNNNNNNNN .................................... GGCCAAATGGTCGAAACATCCTACGCCCTTCTTTAC 3160007 36 100.0 37 NNNNNNNNNN .................................... TCCGTTGGCGCACCGCGAACGTGCGGCCGCACACAGT 3160080 36 100.0 36 NNNNNNNNNN .................................... AGTGACAAACACGCGTTGCCGTCAAATCCTGCCGCA 3160152 36 100.0 36 NNNNNNNNNN .................................... GCGGCGGATATGACCGACTCGTATCACTTGCGAATC 3160224 36 100.0 35 NNNNNNNNNN .................................... AATCAGAGGAACGCATTCACGAACCGCCAAGCGAA 3160295 36 100.0 35 NNNNNNNNNN .................................... TCCCACCCCAGGCACCTTCATTTTGACTTGTCCAA 3160366 36 100.0 36 NNNNNNNNNN .................................... GGAAAAGGTGGTTTCTAGTGCGGTTTCTAGCCACCT 3160438 36 100.0 34 NNNNNNNNNN .................................... GCATCCAATAATCCGACAACGTAAGAGCGTCGGC 3160508 36 100.0 36 NNNNNNNNNN .................................... AACATTACTCCGTCGCAACCGTCTGCCGACATCTCG 3160580 36 100.0 37 NNNNNNNNNN .................................... CGCTTTTCCAAATCGACTTCGAGGGGTTGGACGAGGC 3160653 36 100.0 37 NNNNNNNNNN .................................... TCTTTGAGGGTGGGGACATGCGAGAGGTTTTCAACAC 3160726 36 100.0 36 NNNNNNNNNN .................................... TTCGAAGCCAATTCGAAGGCAATTCGAAGCCAATTC 3160798 36 100.0 36 NNNNNNNNNN .................................... AGCGCAGTACGAGATCATGCAGATCATCCATGAGCT 3160870 36 100.0 36 NNNNNNNNNN .................................... TGCCAAAGGAGCGGTTGGCGATCCCGCCTTGACTTC 3160942 36 100.0 36 NNNNNNNNNN .................................... ATCCGCGGCGCGCTTGACCAAATCAACCAAGGTGCC 3161014 36 100.0 36 NNNNNNNNNN .................................... TTGCTTACATAGGCGGCGACATCATCGCCGCCTATG 3161086 36 100.0 37 NNNNNNNNNN .................................... TTCTCAGCGTCTTTATTGACCAGTTCGCCAACGTGAT 3161159 36 100.0 35 NNNNNNNNNN .................................... TTTGGTGGGATGGAAAATCGAATAGTCTCGCTGAA 3161230 36 100.0 35 NNNNNNNNNN .................................... AGTCCCCTCGCGTGGATGGATGACGAGCGATCCTG 3161301 36 100.0 36 NNNNNNNNNN .................................... CCTTATGGGACTCCTATTGAGCTTGAGCCACAAATG 3161373 36 100.0 37 NNNNNNNNNN .................................... TCTCGACGCTGTCGTTCAAACTCTTGTCCCCAGATTT 3161446 36 100.0 37 NNNNNNNNNN .................................... TGACCATGTCAACACAAGGGAGTGTCGCGTCTTAAAC 3161519 36 100.0 37 NNNNNNNNNN .................................... GAGACGCCACTGACAAAGGCAAGGGAGGTCAAGAAGA 3161592 36 100.0 36 NNNNNNNNNN .................................... GAGGGCGAGCCGCGTGAAGCCAAGATTTAGGGTCCT 3161664 36 100.0 36 NNNNNNNNNN .................................... CGATTGATGGACGCCGTCCACATTTTCAACTCTTCG 3161736 36 100.0 36 NNNNNNNNNN .................................... TGTCTATCTCTGACTCCTATGATAAAGGAAAGCATC 3161808 36 100.0 37 NNNNNNNNNN .................................... CATTTTGGCTGGATCCCAGCCGGAGGCCGAGCCTCCG 3161881 36 100.0 37 NNNNNNNNNN .................................... TGCTTGAGCGCCATTCGTCTCAACCCTCGTGAGTGGC 3161954 36 100.0 35 NNNNNNNNNN .................................... AGCCGCTTCTCCGCGTCACGCTCGAACTCGGCCGA 3162025 36 100.0 35 NNNNNNNNNN .................................... AGATTGTTTTGGGCATCTACTCCCTCTTCAAATAC 3162096 36 100.0 35 NNNNNNNNNN .................................... CCACGGTTCGCCCCAGGAGAGCCGTCCCTTGGAGG 3162167 36 100.0 38 NNNNNNNNNN .................................... TGCATGTTTTTCCAATGACACTCTCGGATCGGGTGTTT 3162241 36 100.0 35 NNNNNNNNNN .................................... GTCCATCAACCGACGGTCCAAACTGATCTTGTCAC 3162312 36 100.0 35 NNNNNNNNNN .................................... CCAAACCCAGGCTGGAATGTCCGAGAGCTAACGTT 3162383 36 100.0 35 NNNNNNNNNN .................................... GGAAGCCGCTTGGCAAGCCGCCTCAAAAGCTCGAA 3162454 36 100.0 38 NNNNNNNNNN .................................... GACCACGGTACCGGAAACTACATGACATTTCCGACCGC 3162528 36 100.0 36 NNNNNNNNNN .................................... CGCAAGCTGACCACTCAGAACCCCAGAGCCAACCCG 3162600 36 100.0 35 NNNNNNNNNN .................................... TGATCGCCATTGACATGGACGTTCGCCTTTCGCCT 3162671 36 100.0 35 NNNNNNNNNN .................................... CTTCGACGCACTCTCTTTTTTGAGCCCCTTTGGTT 3162742 36 100.0 36 NNNNNNNNNN .................................... CCATGAACCAATGAGAATGGTTCATGGCGGTCTCGG 3162814 36 100.0 38 NNNNNNNNNN .................................... GCGAAGGTGAAGCCCAACCCCAAGTTCAGGCCCAAGTT 3162888 36 100.0 37 NNNNNNNNNN .................................... CAGCCGCTTCCCGGCCCTTCAGGCATGATCTTCTATT 3162961 36 100.0 35 NNNNNNNNNN .................................... GAGCCGCTACGCGAGCCACCTCCCCCTCATTTGAC 3163032 36 100.0 36 NNNNNNNNNN .................................... TTCGACAGTGATTCGATAGCTCATGCCGGTTTCAGG 3163104 36 100.0 35 NNNNNNNNNN .................................... TGCGGACGAGCGTGTCTACGCCCTTGGCATTCCCG 3163175 36 100.0 35 NNNNNNNNNN .................................... TGAGAGAAACTCCGCGGCGTCTCAGAACACCCTTT 3163246 36 100.0 37 NNNNNNNNNN .................................... GAAGCGTGTTCTCATTTTTCTTCTGCTCTTGAGGCGA 3163319 36 100.0 38 NNNNNNNNNN .................................... TCGACTGGCGAGCTGCGTTGAGGCGGCGTGCACAGACA 3163393 36 100.0 37 NNNNNNNNNN .................................... CACCACGCGCTTTGGTTCCTGCCATGACCAAGTTCAA 3163466 36 100.0 37 NNNNNNNNNN .................................... TGCGAATGGTCGATGGCGAGTTTCGCCTGTTTCAACG 3163539 36 100.0 39 NNNNNNNNNN .................................... GAACCACCTGAGACTTTTCTCGGGTCGCCGTTGGATTGG 3163614 36 100.0 36 NNNNNNNNNN .................................... CCTCAATCACGTGTCGAACCGATTCGCCTCGTCGGT 3163686 36 100.0 35 NNNNNNNNNN .................................... AAGCGGGGGTCAGAAAAGAAGAGGCCAAGTCGCAC 3163757 36 100.0 35 NNNNNNNNNN .................................... ACCAGATGGCAGCGAATCAAAATCCATCTGAAAAT 3163828 36 100.0 36 NNNNNNNNNN .................................... GTTGGAGTTTCGATCTCGTTGTTCGAGATCATGCAT 3163900 36 100.0 36 NNNNNNNNNN .................................... GCCAGAAGGTCGAGCCAAAAGACGATTCGCTTCCCG 3163972 36 100.0 35 NNNNNNNNNN .................................... AAATGTCGATCGATCGGCTCGACGTCCGGGGTCAC 3164043 36 100.0 37 NNNNNNNNNN .................................... TGGCGGCGTTCGGGGAATCCTGGGGACGGTATCCGAA 3164116 36 100.0 35 NNNNNNNNNN .................................... GATCGGTGGCTGAGAACCCGAGAGTCCTCGCCGCC 3164187 36 100.0 38 NNNNNNNNNN .................................... GAGAATCGACCGAAGCCATTAAGTTGAAGGCCAAACCG 3164261 36 100.0 36 NNNNNNNNNN .................................... GCTCTTTGAGGGCATTGAGAGGGCGTCATGGCGCGG 3164333 36 100.0 37 NNNNNNNNNN .................................... CCCGCCAGACGTTCCCGAACGTCTGGCGAGCTCCACG 3164406 36 100.0 36 NNNNNNNNNN .................................... GATCGTTGGGATCGTAATATTCAGGGCGATGAATAA 3164478 36 100.0 37 NNNNNNNNNN .................................... ATTTTTTCCTCGTGTATTTTTTCCGCCTTAAGAAGAA 3164551 36 100.0 36 NNNNNNNNNN .................................... TTCCGCGTGAACACTAATGGGAACCTTGCTTTGATA 3164623 36 100.0 36 NNNNNNNNNN .................................... GCCTTGAGGCGGAACGTTGCTGAGGCGCCCAGCGCC 3164695 36 100.0 26 NNNNNNNNNN .................................... ATTCGAAGCCAATTCGAAGCCAATTC 3164757 36 100.0 35 NNNNNNNNNN .................................... CCGACTTCTCCACGACATGCGCCTTGGTTCATGAA 3164828 36 100.0 37 NNNNNNNNNN .................................... GCTCATGGATGACCGGGACGACTTGCGCCGCGAGATG 3164901 36 100.0 38 NNNNNNNNNN .................................... ACCCACCTTTTGATGGGCCTGATCAGCTACGCCTATGG 3164975 36 100.0 35 NNNNNNNNNN .................................... AGCATCAACGATTCAGAATGTGATACGGCAGCACG 3165046 36 100.0 36 NNNNNNNNNN .................................... CCGCATCGTAAATCGAAACAGTTGCTCATGATTCAG 3165118 36 100.0 36 NNNNNNNNNN .................................... CGCCAGAGAAGAACGTATCCAAAATTTTTGAGGCGC 3165190 36 100.0 36 NNNNNNNNNN .................................... AGCCTGAACGGATCTTCTCCATCATAACGGGGACAG 3165262 36 100.0 37 NNNNNNNNNN .................................... ATCGCTTTGGCGGCTGTCACAACAACATCTCTCCAGT 3165335 36 100.0 36 NNNNNNNNNN .................................... GAAAGGGCTTTCGGTTGCGTCGGGTCACCTGGACCG 3165407 36 100.0 36 NNNNNNNNNN .................................... GCCAAGGATCTGCATCTGCCCATCTTCGCCCTGTCC 3165479 36 100.0 35 NNNNNNNNNN .................................... ATCTTCGACGCCGTGATCGCCCCGTCCGCAATCTT 3165550 36 100.0 37 NNNNNNNNNN .................................... TCGGCTGGTGCGGGCGAGCCTGACGCCGTGTTTGTCG 3165623 36 100.0 35 NNNNNNNNNN .................................... CAAGCAACGGCCGCTTCGATCTCATCAATACTGAA 3165694 36 100.0 35 NNNNNNNNNN .................................... GGTCCAACTGCCGAACGTCATGCGAGCCATCTCAT 3165765 36 100.0 39 NNNNNNNNNN .................................... TTGGGAGTCCTTATGGGACTCCTATTGAGGAGCCACAAA 3165840 36 100.0 37 NNNNNNNNNN .................................... TCACAACTTGCGCGACTTGATTAATGATGGCGAAGTG 3165913 36 100.0 36 NNNNNNNNNN .................................... GCGGCACAGCAGGGCAACCAATCGATTTCTGGGGGC 3165985 36 100.0 35 NNNNNNNNNN .................................... TTGACGCGGATTGGGTCCAAGCTCGATCGGACAGC 3166056 36 100.0 35 NNNNNNNNNN .................................... TGCCCCCCTCGCAGACCCCAGTACAGGACGACTCG 3166127 36 100.0 37 NNNNNNNNNN .................................... CGCTCATCTTCTGACCCGAGAGACGCAAGTGATGTTC 3166200 36 100.0 37 NNNNNNNNNN .................................... TCACGGGAAAGAGGGGGGTTACCTATGACATCCCCGT 3166273 36 100.0 36 NNNNNNNNNN .................................... TCCCAATATTATGAGTTCAGTCAGAGATGGATTCTT 3166345 36 100.0 36 NNNNNNNNNN .................................... GATTGGAGTCGATCGGAACGTCACCCGCGTTGATTG 3166417 36 100.0 38 NNNNNNNNNN .................................... CCCAAACAGGGAGTTTGTGAATCACGAACCCTGACCCA 3166491 36 100.0 36 NNNNNNNNNN .................................... GTCAAGTCGATGCAGAGTGCCGAGATTTTGACTCCC 3166563 36 100.0 37 NNNNNNNNNN .................................... TTCCGCGTGTCGGGAACGTTTGATCCCGCCAAGTTGG 3166636 36 100.0 35 NNNNNNNNNN .................................... CCGAAAAACGGGTCGATTTCCGATTACCTGAACCT 3166707 36 100.0 37 NNNNNNNNNN .................................... GCCACAAAGACGAGAACGCGATCACAGCCGACTTCGA 3166780 36 100.0 32 NNNNNNNNNN .................................... TTCCCAAAACCCGCGCATCGACTGTGGGGAGC 3166848 36 100.0 35 NNNNNNNNNN .................................... CATCGCTCAACGAGATGGGGGGCGGACCCGGACGA 3166919 36 100.0 35 NNNNNNNNNN .................................... GAGATGGCGGACCCCAGAAGTCCGTCCGGTCTGTG 3166990 36 100.0 37 NNNNNNNNNN .................................... CGCCTTCGCGTCGCCAACTACTTGGAGACGGAGACGG 3167063 36 100.0 35 NNNNNNNNNN .................................... CCGTCTCGCCAACAATGAAACCCAATCGGTCGGTA 3167134 36 100.0 36 NNNNNNNNNN .................................... TACGCCGCCAACAACGCCAACAACGCCAACAACAGT 3167206 36 100.0 38 NNNNNNNNNN .................................... GAGCTTGGCGCAAATCGAAGCCAATTTGCGAGTCCTCT 3167280 36 100.0 38 NNNNNNNNNN .................................... TTCACGATCCCGATCCGGCCGGCATCATCCCGCACGTG 3167354 36 100.0 36 NNNNNNNNNN .................................... CATGAGCAGATGGCGGCGGGTTCGGGTTCGTCTTTG 3167426 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 361 36 36 GCTTCAATGGGGCCGCGTCGTTGAGGACGCGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [7,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-10.60,-9.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [58,257] Score: 0.18/0.18 # # Final direction: F [1.01,0.59 Confidence: LOW] >NC_014964 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 126529 30 100.0 38 ATAGACCTTG .............................. CGCCGAGGTCTTCTCCTGTCGCGATATAATGCGACAGG 126597 30 100.0 36 ATGCGACAGG .............................. GGCAATAGTTTTATTACGTCCAAAACAAACTAAAAG 126663 30 100.0 37 AAACTAAAAG .............................. AAAGGGCGGTTAAACTGCCTGAAAACGGCATAGTGGG 126730 30 100.0 38 GCATAGTGGG .............................. CATGGAAGCAGCAGCCGAGGCCACAGGTGGAGTTTATG 126798 30 100.0 38 GGAGTTTATG .............................. ATGCACCTTGCTTTAGGAGTGCATAAGCCTCTCTCCCG 126866 30 100.0 37 CTCTCTCCCG .............................. TAAAGCAAAAAACCAGTGGCTTTGCTGCAAGGGTTGA 126933 30 100.0 36 CAAGGGTTGA .............................. AGCTGTTGTTTTGACATATTCATCATCCTTTCTGAA 126999 30 100.0 39 CCTTTCTGAA .............................. TGACATTGTCTTCTTTAATTACCTTTCTTATGAAATCCG 127068 30 100.0 35 ATGAAATCCG .............................. GCAGGCAACCCAAAGCGGATGCATTTATGGATTGG 127133 30 100.0 36 TATGGATTGG .............................. ATTAAGTTGTTGGGCCATGATATCAGGGGCAATAAC 127199 30 100.0 36 GGGCAATAAC .............................. TAAGAACCTGTCATAATCTTTTCATTCTTATTTCTA 127265 30 100.0 36 CTTATTTCTA .............................. AAGGAATTTTGGCTAATAAGCTTGAAAACTTCCATC 127331 30 100.0 37 AACTTCCATC .............................. CAAAAATTCTGTACTTTATACCGTTGATTTTTTTATG 127398 30 100.0 37 TTTTTTTATG .............................. TACGCAGTACATACAGCAAAGAAGCAGATATTACAGG 127465 30 100.0 38 ATATTACAGG .............................. TAGCACCGGCATCCAGTAATCATCATGGAAATTATGAG 127533 30 100.0 38 AAATTATGAG .............................. CCATGACGTGGCGGCATCATTACAATAAGACGATTAAG 127601 30 100.0 38 GACGATTAAG .............................. TCTACCGTGACGGGTCGGTGGTCCAGCCGACCGAATAG 127669 30 100.0 38 GACCGAATAG .............................. GTCCATCTTTTTATATTAGCCATCATTATCACCTCAAC 127737 30 100.0 36 TCACCTCAAC .............................. TGGATTACGTGGGCATAGAGAACAAGGTTGACGCCA 127803 30 100.0 GTTGACGCCA .............................. CATAGGCCGT ========== ====== ====== ====== ========== ============================== 20 30 37 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-1.30,-1.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [1699,1943] Score: 0/0.18 # # Final direction: F [5.27,0.37 Confidence: HIGH] >NC_014964 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 131317 30 100.0 36 CGACGGGAAA .............................. TGCCATCACCTATCATACTATCTCCATCCACTCTTA 131383 30 100.0 37 TCCACTCTTA .............................. CCATCTCAGACCGTGCAGAAAGCAACTTGTCTAATTG 131450 30 100.0 36 TGTCTAATTG .............................. AACTATGACATATAAAATTTAATGTGCCTTGTGGAG 131516 30 100.0 37 CCTTGTGGAG .............................. CCAGTACCGTAGCTTCCTACAAATATGATGCCTACTC 131583 30 100.0 38 ATGCCTACTC .............................. TTTCCCTCTATATATTCAACAGGTTCAGGATATTTACG 131651 30 100.0 37 GATATTTACG .............................. TTGAAAGTAAATTAGGAGAAAGATTTCGTGCAAGAAG 131718 30 100.0 37 GTGCAAGAAG .............................. CGTGTTCCCAAAAAAGTGGACATGGTTCTTGTTCTTC 131785 30 100.0 39 CTTGTTCTTC .............................. ATTATTTGCTCAATAGCCGAGCAGAGAACGGATTTGCCT 131854 30 100.0 36 GGATTTGCCT .............................. TTTCCTCTCGGACCGCCCCATCCATTACAGCAGCCG 131920 30 100.0 38 ACAGCAGCCG .............................. CATGCTCTCTCTGTAGTTGTGCGGCTGTTCCCGGTGGG 131988 30 100.0 35 TCCCGGTGGG .............................. TCTACCAATGCATGGACGATATGCAGGACACCTGG 132053 30 100.0 36 GGACACCTGG .............................. GCGAACCCATACTGCAAAGCCTCTTCTGCTGTCATC 132119 30 100.0 37 TGCTGTCATC .............................. ATGCTTCCATCTTTTTTCGCCTCCTCAGTATCTTTCC 132186 30 100.0 37 GTATCTTTCC .............................. ACAATAAGGCGATCCCGGCGCTGATTGATTTAAACGG 132253 30 100.0 36 ATTTAAACGG .............................. GTTAATACGGCCGGCATGTTTGTCTTGCGAAGCACG 132319 30 100.0 37 GCGAAGCACG .............................. CCTCGGACGATGCTAAAGCAACTCTTTCACCTTGCAG 132386 30 100.0 40 CACCTTGCAG .............................. CAGAAAAGTGTATCATTGTGTATCATGTTTCTTGAGTTTG 132456 30 100.0 37 CTTGAGTTTG .............................. CACATTTCAGCAATTCTCGATACTATTGCATCGCCTG 132523 30 100.0 37 GCATCGCCTG .............................. GAAGAAGAGGAATAGAGAGGGTTTACTCCCTCTCTTC 132590 30 100.0 37 CCCTCTCTTC .............................. TTTTGTCCGAGGGACTTGGTCTAAACGTGGACAGCGA 132657 30 100.0 36 TGGACAGCGA .............................. AGATCTTTTTGAGGACAATTACCTTTCCGTCTATAT 132723 30 100.0 38 CCGTCTATAT .............................. TGTGTATTACATTGCCTTGTTTATCAAGTGGTTGTATA 132791 30 100.0 38 TGGTTGTATA .............................. TTACGTGCGCAAAGATGGCAGCATCTTCCGAGGCAGAG 132859 30 100.0 37 CGAGGCAGAG .............................. ATTATCTCTTGAAGCGCCTTTGCAGTGTCGAATTTTT 132926 30 100.0 37 TCGAATTTTT .............................. TTTGGAATTCCTTTAGGCGCTCGAACTCACCCATCTG 132993 30 100.0 38 CACCCATCTG .............................. AAATACTCGCCGGCGCGAACCTTAATCTTCACCGGCCA 133061 30 100.0 37 TCACCGGCCA .............................. CCCATAACCTTGGGAACACAAATTATATGGTGAACAT 133128 30 100.0 37 TGGTGAACAT .............................. AGAAACTCGCAGAACCCGGCCAACCTGCTGGCTATAG 133195 30 100.0 36 CTGGCTATAG .............................. ATAAAAAAGTTCCCCGTTGTTACCTCATGTTGCTGT 133261 30 100.0 37 ATGTTGCTGT .............................. CAAGATAAATGGGATAGCCTTGTTGAGGCAGCAAAAA 133328 30 100.0 36 GCAGCAAAAA .............................. CCAACGCTCCCGGTGGTCTTGCGCTGTTCTGGAGTA 133394 30 100.0 35 TTCTGGAGTA .............................. ATGTCTAACCTATCAAGTACGTCTTTTATTGCTTG 133459 30 100.0 TTATTGCTTG .............................. TGGATAGCAAAGGCAAGTGCAGAACTGGATAAAAAGA ========== ====== ====== ====== ========== ============================== 33 30 36 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-1.30,-1.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [324,154] Score: 0.18/0.18 # # Final direction: F [5.18,0.37 Confidence: HIGH] >NC_014964 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 135184 30 100.0 37 ACGCAATAGC .............................. GATAGCCTTCAGCTATTAACTTTGCCGCTTCCAATTG 135251 30 100.0 36 CTTCCAATTG .............................. GCTGGTGCTTATTATTGGAAAGGATATAAACAAGCA 135317 30 100.0 35 TAAACAAGCA .............................. CGCTGTCGTCTTTGTTAAAGGACCTGTACCCTGCA 135382 30 100.0 38 GTACCCTGCA .............................. AGATATTGTTCAATATTGCATTTATCTCCGCTTCGCTT 135450 30 100.0 37 CGCTTCGCTT .............................. TGTAGAAAATGTCAAAAAACATCAAAAAGGAGGTGTG 135517 30 100.0 35 AGGAGGTGTG .............................. AGTAAATACGGGAACAGAAGCAGCACCCGTGTGGA 135582 30 100.0 36 CCCGTGTGGA .............................. CATTGCCACTACTTGCAGCAGCAGGAGCATCTATAA 135648 30 100.0 37 GCATCTATAA .............................. CGTAGAAATAGACCCACCATTTCATCCAGACACACAC 135715 30 100.0 35 AGACACACAC .............................. CTGATTGAGTACTAGGGAGGGAGAGAGATGTATCC 135780 30 100.0 37 AGATGTATCC .............................. AGCGCTTGAGGATGCATACATGAATAATACAATTTTA 135847 30 100.0 37 TACAATTTTA .............................. CGCCCAAAATGGCGCTTAAAACGGCTGCAAATTTGTC 135914 30 100.0 37 CAAATTTGTC .............................. CCAGCCTGTAATGCAGGGTCGCCTACAAATCCGACGT 135981 30 100.0 38 AATCCGACGT .............................. TTCTTTAGATATACTTAAAAGCAATGTAGAGAAAGGTG 136049 30 100.0 37 GAGAAAGGTG .............................. CGAGTGAAAAGATGATACCATGTCGCTTTGAAATGAG 136116 30 100.0 35 TTGAAATGAG .............................. TCCCTAGTAGTTTAGCCATATCAGCTTGTTTTAAA 136181 30 100.0 36 TTGTTTTAAA .............................. AGCTCTTTCATTAATTTTGCAGCTTTGTCTGTCGGA 136247 30 100.0 36 GTCTGTCGGA .............................. TTGCCAAGCTGTTTTGCTAATTTGCTCATTTTTGCC 136313 30 100.0 37 CATTTTTGCC .............................. TCGATATAATAGCTCTAAACGTTTGGCTTTGCTTTGT 136380 30 100.0 40 TTTGCTTTGT .............................. ATATCCTCGCCAGATACACATTGCTCGCTAACATACAGGC 136450 30 100.0 36 ACATACAGGC .............................. TAACGCAGACGTGGGAGGTTGCCGTGGATTCGGTTG 136516 30 100.0 37 GATTCGGTTG .............................. TCATAATCTATCAAACCGCTTGCTATTGCAAGCATGA 136583 30 100.0 36 GCAAGCATGA .............................. ACATTGTTTGTAGTTTTGGTATGTTCTGTTGTATAC 136649 30 100.0 39 TGTTGTATAC .............................. TATCATTCCAACTACCAACTTTTGTTAAATAATATTCTC 136718 30 100.0 37 TAATATTCTC .............................. TATGCTGCATACGTCGAATACGGCACAAAAAAGATGG 136785 30 100.0 AAAAAGATGG .............................. CCATGTTGGTTTTACGCTCAATCTCGGTTACGTAGAAA ========== ====== ====== ====== ========== ============================== 25 30 36 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-1.30,-1.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [50.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [324,155] Score: 0.18/0.18 # # Final direction: F [5.18,0.64 Confidence: HIGH] >NC_014964 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 955169 30 100.0 36 ATTATAATGG .............................. GATAAAGATTGGCAAATAACTGTGATGTAAGGTTAC 955235 30 100.0 37 GTAAGGTTAC .............................. GCACAAGAAAAACCTGTACAAGCAGGTAACTGGATTG 955302 30 100.0 36 AACTGGATTG .............................. TTTGACGTTGTTTCTTGCTCCACTTCTTCTTTTTGC 955368 30 100.0 39 TTCTTTTTGC .............................. AAGGCTGAACTTGAACAATCTGAAGTGAAGTTGGTACAA 955437 30 100.0 39 GTTGGTACAA .............................. TTATATTGAAATTGACTGGAATTTTAGAGAATTTTACCT 955506 30 100.0 37 AATTTTACCT .............................. AAATATGCTTGTACAACTTTATTGATGAGTTCTTGAC 955573 30 100.0 36 AGTTCTTGAC .............................. AAAAATTGGACAGCACAAGGACTAAAAACGAGAGAA 955639 30 100.0 36 AACGAGAGAA .............................. ATAAACTTTTTTACGTCTTGCAGTTTCATTTTTACC 955705 30 100.0 36 CATTTTTACC .............................. AGCAATTGTACAGAGCACACTCAAAGAAAAAAAAGA 955771 30 100.0 39 AAAAAAAAGA .............................. ATTCCGCTTCTCTTAAAAAACTTTTGTGCGGAAAAATGT 955840 30 100.0 37 GGAAAAATGT .............................. CCGGCATCCGGGCCACCTCCCTGTTACTGTTACTCTC 955907 30 100.0 36 TGTTACTCTC .............................. TGGGACCACTACTATGAGCTGATAGAATACGACAAA 955973 30 100.0 36 ATACGACAAA .............................. ATGGGAAGCATTCGTATATTTCGTAGGTTTTGCAAT 956039 30 100.0 35 GTTTTGCAAT .............................. AGGTGGGAGAAAGACAACAAAAGCAATGCACTTGC 956104 30 100.0 36 ATGCACTTGC .............................. GCATTAAAAATTGCCAAACTGTTGAATGAATATGAG 956170 30 100.0 TGAATATGAG .............................. ACACGCCACC ========== ====== ====== ====== ========== ============================== 16 30 36 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-1.30,-1.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [81.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [199,356] Score: 0/0.18 # # Final direction: F [5.27,0.37 Confidence: HIGH] >NC_014964 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 956237 31 96.8 37 AATTGCAAAC ..............................T GGTACTTAGGCTAACAAAAATGCCGGCCGTATTAACA 956305 31 100.0 35 CGTATTAACA ............................... ATTATTGCAGAGGCAATGGCAAAAGGCTTAAGCAA 956371 31 100.0 GCTTAAGCAA ............................... TGCGGTGATGGCTTATGAGGATACGTATATTGCGTAG ========== ====== ====== ====== ========== =============================== 3 31 36 GTTTTTAGCCTACCTATAAGGAATTGAAACA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.74%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.30,-1.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [236,154] Score: 0/0.18 # # Final direction: F [4.5,0.78 Confidence: HIGH] >NC_014972 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1701541 32 100.0 35 NNNNNNNNNN ................................ ACGTATCGCAGCGCGTCACCGTTGCTCTTCACCGC 1701608 32 100.0 34 NNNNNNNNNN ................................ GCGAGGAACGCGGAGAAGTTGATACCGGATGCAA 1701674 32 100.0 33 NNNNNNNNNN ................................ TCAGCCTCCCCCTCAACGAGGAGTGGGAGACAA 1701739 32 100.0 34 NNNNNNNNNN ................................ CGCTGCTGCTGGCGACAAACTCGTTATATGCCTC 1701805 32 100.0 35 NNNNNNNNNN ................................ TTATGCTGGGTGGTCGGTTGTCTGGTAGATATCGT 1701872 32 100.0 34 NNNNNNNNNN ................................ CAGCTAGAGGTCGCTGTCGCGCCAGAGATCGACC 1701938 32 100.0 34 NNNNNNNNNN ................................ CTCGCAACATTACGCCGCATCCCGTATCGCCCGA 1702004 32 100.0 35 NNNNNNNNNN ................................ TCAAGCGCCCATGCCGTGCAAGTTTTAGCGTCGCC 1702071 32 100.0 35 NNNNNNNNNN ................................ TTTTTGCTGCCTTTTTTTGCTGCCTTGTTGCTGCC 1702138 32 100.0 33 NNNNNNNNNN ................................ TCGGCGCAGATAAAAAGGAAGTTTTCAAACCGA 1702203 32 100.0 35 NNNNNNNNNN ................................ ACCGCTTCCATCGAAGCCTCAAGTCCAACAATTGC 1702270 32 100.0 33 NNNNNNNNNN ................................ GCTGCTCCTTGCTGGTCTCCGGCCCTTGCGCGA 1702335 32 100.0 34 NNNNNNNNNN ................................ TGGTAAATCGTATTATCTGGTCAGGTTGCTGGCC 1702401 32 100.0 36 NNNNNNNNNN ................................ CTGTTAAAGCGGTATACCTGCTCGACTATGACCAAA 1702469 32 100.0 35 NNNNNNNNNN ................................ AAAGACGACATCATGACTTATGACAGGCACTTCAA 1702536 32 100.0 35 NNNNNNNNNN ................................ CTGTTAAAGCGGTATACCTGCTCGACTATGACCAA 1702603 32 100.0 35 NNNNNNNNNN ................................ ACAGATAGTAAACCCGAAAATCGAAAGTGTTTTTA 1702670 32 100.0 34 NNNNNNNNNN ................................ CTGTTAAAGCGGTAATCCTCCAGGGGGATTTCCT 1702736 32 100.0 36 NNNNNNNNNN ................................ AGACTGCCGGTAGCAGCGACGCGGCTGCATCGCTGG 1702804 32 100.0 34 NNNNNNNNNN ................................ CGGCAAATCGTATTATCTGGTCAGGTTGCTGGCC 1702870 32 100.0 33 NNNNNNNNNN ................................ ATGGCAAGGGGGGTTGAATGAAACCTAAGCGAA 1702935 32 100.0 34 NNNNNNNNNN ................................ GGTGCAGTTGTTACTATATAGACAAGGAAGGGGG 1703001 32 100.0 34 NNNNNNNNNN ................................ GCCGCTCCTGGTGTCGCTCAATGGGATGAAGACG 1703067 32 100.0 34 NNNNNNNNNN ................................ GGTTTTGAAGCGATGAACCCGGCAGAATGACCGG 1703133 32 100.0 35 NNNNNNNNNN ................................ TTTTTGAACCGACATCGCTGCGCTCGTCGGCGGGC 1703200 32 100.0 34 NNNNNNNNNN ................................ GAGGAAATCGTCATGATCGGAGCATTGGCAGGCA 1703266 32 100.0 34 NNNNNNNNNN ................................ ATGCAGGTTGCGCTCATTGCGCTTGAGCAAATAG 1703332 32 100.0 33 NNNNNNNNNN ................................ CGAAACATGCCAATAACGAAACTCCCCCATCAA 1703397 32 100.0 36 NNNNNNNNNN ................................ CTTAGCGTCATCTTGGGTTCAGATTATTGGCGGCGG 1703465 32 100.0 35 NNNNNNNNNN ................................ CGGAGACCGTCACGTCCTGGCCAGAAACGAAACCA 1703532 32 100.0 35 NNNNNNNNNN ................................ CTCGGCCGCATCGATCATCGATCCCGCCTCATGTC 1703599 32 100.0 33 NNNNNNNNNN ................................ ACCGGCGACGCGCCGACCAGGAGGGTCTGAAAT 1703664 32 100.0 34 NNNNNNNNNN ................................ CACATCACCATGCCGAGTTTTGGCAACACGCCAA 1703730 32 100.0 34 NNNNNNNNNN ................................ TCAAACCAGGAGAACACCGGTGCCGGCACCTCTG 1703796 32 100.0 34 NNNNNNNNNN ................................ GCGCCGAGCAGTTTCGGCACAACTGGAACCCGAC 1703862 32 100.0 34 NNNNNNNNNN ................................ TCTGAAATCAACTGTTGCCACACCTGCTGCTGCT 1703928 32 100.0 36 NNNNNNNNNN ................................ GCGGCAGCATGGCCGCAGATCGCCGACGCTTATGCG 1703996 32 100.0 33 NNNNNNNNNN ................................ TTGCTGGAGACATTGGCGCGGTTGCAGGGCCAA 1704061 32 100.0 34 NNNNNNNNNN ................................ CAAGTCAATGGCCATATCAGCCTGAAACGAATCG 1704127 32 100.0 35 NNNNNNNNNN ................................ CCGTGCTGACATGGCTGCGCAAGCATGCCCGTGTG 1704194 32 100.0 35 NNNNNNNNNN ................................ GCCGCATCAGGCAATGGATGGCTGGAGAGCGCAAA 1704261 32 100.0 38 NNNNNNNNNN ................................ CCCGTAACAAAGAAGGTGCTCCCTTTTCTTGCCGGGCG 1704331 32 100.0 36 NNNNNNNNNN ................................ GCCGATGAGCGTGCCGTAGCTGTACACCCGCACTGC 1704399 32 100.0 35 NNNNNNNNNN ................................ CTGGTGCATCCAGTCCGGCCTGACCTTAACCAGCT 1704466 32 100.0 33 NNNNNNNNNN ................................ GCCGCACCATGAAATCGTGTGCGAAGCGCTCAT 1704531 32 100.0 36 NNNNNNNNNN ................................ ACGGCCGAACCGCACGCTCCGGACTGCCATTCAAAG 1704599 32 100.0 36 NNNNNNNNNN ................................ GACGATGTGTCTGACGACGTGATTGCCGCAGCTCCG 1704667 32 100.0 35 NNNNNNNNNN ................................ TGGCCGGCTCGCTGCCAATAACTCCTGGCAGGCGC 1704734 32 100.0 35 NNNNNNNNNN ................................ TGGCCGGCTCGCTGCCAATAACTCCTGGCAGGCGC 1704801 32 100.0 34 NNNNNNNNNN ................................ TGCAGACTGATAAAGGAGGTTGACCCGGTGGGTT 1704867 32 100.0 34 NNNNNNNNNN ................................ GCGGGTCCCTGCGCCTGGGGATGGTGCAGGGCGA 1704933 32 100.0 33 NNNNNNNNNN ................................ TCTTTGCTTTTGCCCAGCTGCTCGGCGAGCTGC 1704998 32 100.0 35 NNNNNNNNNN ................................ CCCGGAAGCCGCAAAGGCGCTGAAAGAAAAAATGA 1705065 32 100.0 34 NNNNNNNNNN ................................ ATCATGCCGCCCCCTCCACATTGACCCATGATAT 1705131 32 100.0 34 NNNNNNNNNN ................................ GTGAACTTCCGCGCCATCTTCTTGTTCATGATCA 1705197 32 100.0 34 NNNNNNNNNN ................................ ACGAGGGGTCAGGGGCCACAATCCTGCTGATCGG 1705263 32 100.0 34 NNNNNNNNNN ................................ ATACTTGCCGACCAGTGGCAAGAGCGGGTTACTA 1705329 32 100.0 33 NNNNNNNNNN ................................ CTTTTTCCCATTGCTTATATGCTCAGGTGATAG 1705394 32 100.0 34 NNNNNNNNNN ................................ AACTCCCCCGGTTACGGACTTACAAAATCCCCAA 1705460 32 100.0 33 NNNNNNNNNN ................................ GCAGTAAGTGCCACGCCATAGGACAATGGTATG 1705525 32 100.0 35 NNNNNNNNNN ................................ ATTGAGCGCAAAGAGATCACAGGCAAGAACGGTGG 1705592 32 100.0 35 NNNNNNNNNN ................................ ACGTATTGCAGCGCGTCACCGTCTTCCTTCACCGC 1705659 32 100.0 35 NNNNNNNNNN ................................ CCTGGATTGTGGATGCTGGCAGACAGGGAAGGACG 1705726 32 100.0 34 NNNNNNNNNN ................................ TGGGCCATGCTCACCATGGCCTCGATAGCCTTGT 1705792 32 100.0 34 NNNNNNNNNN ................................ ATCTGGCATCAAGGAGTGTCGCGGTTACGAAACG 1705858 32 100.0 34 NNNNNNNNNN ................................ TGTATCGGAAGTTGAACTTAAAAACAAAGGAGGT 1705924 32 100.0 36 NNNNNNNNNN ................................ ATGTCGAGCTCATGGTTGCCGGGGTGAGGTACCGGC 1705992 32 100.0 34 NNNNNNNNNN ................................ CATGGCCTCCGGGATGGTTGGACCGGTGGGGATG 1706058 32 100.0 34 NNNNNNNNNN ................................ ATCTGGCATCAAGGAGTGTCGCGGTTACGAAACG 1706124 32 100.0 34 NNNNNNNNNN ................................ TGTATCGGAAGTTGAACTTAAAAACAAAGGAGGT 1706190 32 100.0 36 NNNNNNNNNN ................................ ATGTCGAGCTCATGGTTGCCGGGGTGAGGTACCGGC 1706258 32 100.0 34 NNNNNNNNNN ................................ CATGGCCTCCGGGATGGTTGGACCGGTGGGGATG 1706324 32 100.0 34 NNNNNNNNNN ................................ CCCGCCGTCATCGCTGAGTTGGTTGAGAATAAAC 1706390 32 100.0 36 NNNNNNNNNN ................................ CCGTTTTTGGTCTTCCCAGGCTGAATAGTCGGACAT 1706458 32 100.0 34 NNNNNNNNNN ................................ TGGATGCGCTCCTCAACGGTCACCAATTCGGCTA 1706524 32 100.0 34 NNNNNNNNNN ................................ CATCAGTATCAATGCGGAGTATCTGACTATTGCC 1706590 32 100.0 35 NNNNNNNNNN ................................ TTGATTCAATCGCCTGCCTCAACTTGTCCTTGAGT 1706657 32 100.0 36 NNNNNNNNNN ................................ TTGGGTATACGACCGGGAAGATTTACAAAGAGGCCA 1706725 32 100.0 34 NNNNNNNNNN ................................ TTTACTGTACGGTGCATTATTTTCTATCGTTGTA 1706791 32 100.0 33 NNNNNNNNNN ................................ GTTACGGGGGAAACGGTCCCCTATCTAGGGTTT 1706856 32 100.0 36 NNNNNNNNNN ................................ ATAATAACTACCATACTGTAGGATAATGATATACTA 1706924 32 100.0 34 NNNNNNNNNN ................................ GTTAGTTTGTTTGTTTATTCGGTTGTCTCTCGCT 1706990 32 100.0 35 NNNNNNNNNN ................................ TTCAACTCAAGGCCAACGCCGAAATCCTCAAGGCC 1707057 32 100.0 34 NNNNNNNNNN ................................ TGATGAAGATCACGCTATCGAGGAATGTGATGGT 1707123 32 100.0 33 NNNNNNNNNN ................................ TTTATGACGGAATGGTAAGCGCTGATAATTTTG 1707188 32 100.0 34 NNNNNNNNNN ................................ TATATCACCCTTAACGCCTCCCCAAAAATGGGGT 1707254 32 100.0 36 NNNNNNNNNN ................................ ATGGCATTGTTGGCCGCACCCTGCTGCTCCTTGAGG 1707322 32 100.0 34 NNNNNNNNNN ................................ ATCAAGGCCCTCAAAAGCGGTTTTGCCAACCCGA 1707388 32 100.0 36 NNNNNNNNNN ................................ ACGCAGGCACTTATCCACCAGGATCTTGGCGGTTTG 1707456 32 100.0 36 NNNNNNNNNN ................................ GTCGCGGCATCGGCCATGATCCGACCATCACGGGTA 1707524 32 100.0 34 NNNNNNNNNN ......................A......... TTGAAACCGCTAAACGAACGCTACCCGATCAAAG 1707590 32 100.0 1 NNNNNNNNNN ..................CGTG.AT.GA..C. NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 92 32 34 GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.20,-11.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [51.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [175,316] Score: 0/0.18 # # Final direction: F [5.55,0 Confidence: HIGH] >NC_014974 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1182146 29 100.0 32 GGTCCCAACT ............................. ACCACCCCTTCGCTTGCGAGTTGCGTCAGTTG 1182207 29 100.0 32 GCGTCAGTTG ............................. GTGGAGGAGCCCCAGGTCCCTCCCGACCCGAC 1182268 29 100.0 32 CCGACCCGAC ............................. GCTGCCCTCCAGGGCTTGACCAGCTCCCCTAT 1182329 29 100.0 32 GCTCCCCTAT ............................. ATCCGGTTGAACGCCTCCTGCATCTTTGCCTC 1182390 29 100.0 32 TCTTTGCCTC ............................. CGTGTCCCCGTGCCGGGCGGCGTCGGTCATGA 1182451 29 100.0 33 TCGGTCATGA ............................. GGAGATGGCTCCCTGGACTGCCTTGGGGGTTAA 1182513 29 100.0 32 TGGGGGTTAA ............................. CCATTCGGCTACCTGCCCCTACGAGGCCGCAG 1182574 29 100.0 32 GAGGCCGCAG ............................. TAGCTCAAACCGCCACTGCCTTCTTCGGGTGG 1182635 29 100.0 32 CTTCGGGTGG ............................. GCTGCCCCTCAAGTCCTGGATGCCACCGCCGT 1182696 29 96.6 32 CCACCGCCGT A............................ CTGGCGTCGTACCAGGCGAAAGCCTTGCGGTA 1182757 29 100.0 CCTTGCGGTA ............................. TCGTGGGCGT ========== ====== ====== ====== ========== ============================= 11 29 32 CGGGCCATCCCCACGCGTGTGGGGACTAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [4,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [40.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [509,1601] Score: 0.18/0.18 # # Final direction: F [0.68,0.18 Confidence: MEDIUM] >NC_014974 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1182880 28 100.0 34 GATCCCTGCC ............................ GGCAGGTATGCCCGACGGGTGGTAGGATCCCGCT 1182942 28 100.0 34 GGATCCCGCT ............................ ATGCTCCGGGGGGTCGTAGATGACGATGCCAAAC 1183004 28 100.0 33 GATGCCAAAC ............................ GATAGACTAGGAGAGGGTAGATGAACTGGTACC 1183065 28 100.0 33 AACTGGTACC ............................ TGGACCTCCACGGTGTAGCTGGGCACCGTGGCC 1183126 28 100.0 33 CACCGTGGCC ............................ GGACCGGCCTCCCACGCCCCGTGGAGGTAACGC 1183187 28 100.0 33 GAGGTAACGC ............................ GGCTCCGGCATTGGGGCCGCCGGGGAGAACGAA 1183248 28 100.0 34 GGAGAACGAA ............................ GATAAGCCCCGGGCGGCCGAGGGACACATTCTCC 1183310 28 100.0 33 CACATTCTCC ............................ CTACACCAGTTTACCGAGTGCGGGTGTGGGATC 1183371 28 100.0 34 GTGTGGGATC ............................ GGTTGCGGGCCGCTTCCTCGGCGATGCGGGCGGC 1183433 28 100.0 33 TGCGGGCGGC ............................ CAGGACGTGGCCGAGGGTGTCCCCCACCTGGAC 1183494 28 100.0 33 CCACCTGGAC ............................ TCCCCGGTCGCCATTTCCCACAGGACGGCCTCT 1183555 28 100.0 33 GACGGCCTCT ............................ CAGAGGTCTGCAGTCTCGTTCACCCGACGCACC 1183616 28 100.0 34 CCGACGCACC ............................ GGACGCCCGCCCAGAGAAGACGCTCCACCTCGTC 1183678 28 100.0 34 CCACCTCGTC ............................ GCCTCGTCTTCCACGCCCGGTGGCAGGGAGACCC 1183740 28 100.0 33 AGGGAGACCC ............................ TGCGTTCCGCCATCTCAGCGTAAAACGGAACAA 1183801 28 100.0 33 AACGGAACAA ............................ GTAGCCCGGGGATGGTCAGGGGTTATCCCCGTC 1183862 28 100.0 32 TATCCCCGTC ............................ GCCGGAGCATGGTCTACCTCCGAGAGCGCTTC 1183922 28 100.0 32 AGAGCGCTTC ............................ GAGCTTCCGCCGGCGGAGCCTCCCGTGATCCC 1183982 28 100.0 33 CCGTGATCCC ............................ GGGCTCGGGCCGAGCTGGGGCGGCGGTTTCCGC 1184043 28 100.0 33 CGGTTTCCGC ............................ GCGTGCCCCACCAGCCGGGGGATGTGGGTGAGC 1184104 28 100.0 33 GTGGGTGAGC ............................ TGATATCCACCCTCAAACTCTCCACATCGCCAC 1184165 28 100.0 33 ACATCGCCAC ............................ CCGTAATCCCAGAGTGGCTGAGCAAAAACTTGC 1184226 28 100.0 33 AAAAACTTGC ............................ TCAATGTAGTTCCGCTCGATCACCTCCCTTCTC 1184287 28 100.0 CTCCCTTCTC ............................ ACATGATCCA ========== ====== ====== ====== ========== ============================ 24 28 33 GGGCCATCCCCACGCGTGTGGGGACTAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [4,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [36.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1243,72] Score: 0.18/0.18 # # Final direction: R [0.18,0.27 Confidence: LOW] >NC_014974 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1194463 29 100.0 32 NNNNNNNNNN ............................A GGGACTCTGGCAGGTATCCTGGCGGTTCTGGC 1194524 29 100.0 33 NNNNNNNNNN ............................. CGCAAGAAGTGAGCCCACCGGGGCCAGGAGCCC 1194586 29 100.0 33 NNNNNNNNNN ............................. GGCCCCCGCATCACAAACTGCTGGATCACGGGA 1194648 29 100.0 32 NNNNNNNNNN ............................. CGCACCACCTGGTTGTCCATAAGCCCCCCGGC 1194709 29 100.0 32 NNNNNNNNNN ............................. CTCCGAAACCTCCTTGAGCCGCAAAAGCCGCA 1194770 29 100.0 32 NNNNNNNNNN ............................. GCTCCCAGGCGTCCCGGGAAAAAATCCGGGTC 1194831 29 100.0 32 NNNNNNNNNN ............................. GTGAGGTCTAGGGCGGCGGCGGGCATGAGCAC 1194892 29 100.0 32 NNNNNNNNNN ............................. AGCTTGAACCCATGCGGATCACCGCCGTGGAA 1194953 29 100.0 33 NNNNNNNNNN ............................. GTGGTGGCGGCCAGGTTGCGCCACAAGGATGTA 1195015 29 100.0 33 NNNNNNNNNN ............................. CGCACCCCTCCCCCCACCCGGGCCTGGTACTCC 1195077 29 100.0 33 NNNNNNNNNN ............................. GATGACCCTATCGTCCTCGCGGTAGGGCCACAC 1195139 29 100.0 32 NNNNNNNNNN ............................. GCCGCCTTCCTCCAGCGACCGGATCGCCCGCC 1195200 29 100.0 32 NNNNNNNNNN ............................. CCCCACCCTGAGGGCCCCACGTCTAGCCGTCC 1195261 29 100.0 33 NNNNNNNNNN ............................. CGGAGGGCCCTTTCCGCGATTAGCCCCTGGACC 1195323 29 100.0 32 NNNNNNNNNN ............................. CGCGCCTGGCGCTCCACGTGCGGGACGAAGCC 1195384 29 100.0 32 NNNNNNNNNN ............................. TGGTGACGGCGGTGACGCTGGTGTCCGGGGGA 1195445 29 100.0 31 NNNNNNNNNN ............................. CGGTAATCCGGGGCGCTGTGGTGAAGGGCGC 1195505 29 100.0 32 NNNNNNNNNN ............................. GATTGGAACGCCAGGGTACCGGACACCTGGCA 1195566 29 100.0 32 NNNNNNNNNN ............................. GAAAAATCCACGCCGCATATTCCTTTTTGGGC 1195627 29 100.0 32 NNNNNNNNNN ............................. CGGGCGTTTGGGGACGTGGCCGCCAAGTTCGG 1195688 29 100.0 32 NNNNNNNNNN ............................. CTACGCCCCCATCCCCAAGAAGGCTAAAGCGG 1195749 29 100.0 32 NNNNNNNNNN ............................. AGCCAACCGCCAGTGCAAGCCCCATCGCCATC 1195810 29 100.0 32 NNNNNNNNNN ............................. GCCCTGCTGACCTCCTCCAGCAGGGCCCCCTC 1195871 29 100.0 33 NNNNNNNNNN ............................. TGGAACATGACGGGCACTGTTACAGGCCGATTC 1195933 29 100.0 32 NNNNNNNNNN ............................. GTCCGGGTGAACGAGGCTATGCTGGAGACCCT 1195994 29 100.0 32 NNNNNNNNNN ............................. GCTCTGGATGAGGCCAGAGTGCCCCAGAGCGG 1196055 29 100.0 32 NNNNNNNNNN ............................. TACCGCCCCCCACGGCGCTGGCAAGGCGCTCC 1196116 29 100.0 32 NNNNNNNNNN ............................. CTATTCATCAGGACGAGGGGGGAAGAAAAATG 1196177 29 100.0 32 NNNNNNNNNN ............................. GGTTGCGCCCTACAGCGTGTTCCCGGTGCCCC 1196238 29 100.0 32 NNNNNNNNNN ............................T TTCCTCGTTGTCGGTCATCGCCTCCTCAGCCC 1196299 29 100.0 32 NNNNNNNNNN ............................. GGAAGAGGGCGGTTCTAACTCGAGCCAGGCTC 1196360 29 100.0 35 NNNNNNNNNN ............................. GATGAGGACGGGGTTTGGACATGCAGGGGCGGCCC 1196424 29 100.0 32 NNNNNNNNNN ............................. TATTTGACGGGGTCGTGGTTAGTGTTGCGTGA 1196485 29 100.0 32 NNNNNNNNNN ............................. GCAGGTGGTGGCGGTGTCCCAGGTTTTCCCTC 1196546 29 100.0 33 NNNNNNNNNN ............................. AAAGGGGAGGAGGTGGCCTAATGCGCCGGATCC 1196608 29 100.0 32 NNNNNNNNNN ............................. CCCCATCTCCCGTCCGATATCCACAGCAATGG 1196669 29 100.0 32 NNNNNNNNNN ............................. ACGCCCGGCGGGCGGAGCTTCTCGGGAAGAAA 1196730 29 100.0 32 NNNNNNNNNN ............................. CGAGTAGCTTCCCGGCGCAAGGTCGTCCCCGC 1196791 29 100.0 33 NNNNNNNNNN ............................. GCCACCCCGCTCGCTCCCAGGCGCTGGATGCGC 1196853 29 100.0 32 NNNNNNNNNN ............................. GAGGTGAGTGCTGTGGGCTTTGAACCGGGTGA 1196914 29 100.0 33 NNNNNNNNNN ............................A GTCGTATTTAATGATGTATTGGGCGTTCCAGGC 1196976 29 100.0 32 NNNNNNNNNN ............................. CATCGGAGGAGGTGGGATGATGCGCAGGGCAA 1197037 29 100.0 1 NNNNNNNNNN ..............C............T. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 43 29 32 GTAGTCCCCACGCATGTGGGGATGGCCCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [219,122] Score: 0/0.18 # # Final direction: F [0.41,0.37 Confidence: LOW] >NC_014974 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 575015 28 100.0 33 TGGGTCATGT ............................ GTGCTCCATGTACGCACCGGCCCCTTTAGGCCA 575076 28 100.0 33 CTTTAGGCCA ............................ GTCACCGCGGCCAGGACGATGACGGTAGTCATA 575137 28 100.0 33 GGTAGTCATA ............................ GCGGCACCAGCCAGCGCCGTCCCAAGCGCACCC 575198 28 100.0 32 AAGCGCACCC ............................ GGACTCATGCCATCACCCCCCAGGGCTTGCTA 575258 28 100.0 33 GGGCTTGCTA ............................ GGCATTCCCGGCATTCCCGGGCCGGGACCTCCC 575319 28 100.0 33 GGGACCTCCC ............................ TTTTGGCGTTCCTTTCCTCCTTCCGGGCCGCGA 575380 28 100.0 33 CGGGCCGCGA ............................ GCCCTCGTCCCGCAGGGCGTGGATGCCCGCCCA 575441 28 100.0 33 TGCCCGCCCA ............................ GATGCCGCATCCATAGCCAGATACGGTCGGAGA 575502 28 100.0 32 CGGTCGGAGA ............................ GCTCCCGCCATAGTGTCAAGGGGGGTACCGGA 575562 28 100.0 GGGTACCGGA ............................ GCCTATCCAT ========== ====== ====== ====== ========== ============================ 10 28 32 GTAGTCCCCACGCACGTGGGGATGGCCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [4,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [187,130] Score: 0/0.18 # # Final direction: NA [0,0 Confidence: NA] >NC_015138 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================= ====== 1785448 33 100.0 33 CCGGAGCGCA ................................. CTTACCATGTGCTGCCACAGCTAAAACAGGGGC 1785514 33 100.0 34 AAACAGGGGC ................................. ACTCGCCGTGGGTCCGTGCTGAGCTTCGGTACGG 1785581 33 100.0 34 TTCGGTACGG ................................. TCAGGGCCACCGCAAAGGCAACCTGCGCAATGGA 1785648 33 97.0 GCGCAATGGA ................................T CGGCCTCGG ========== ====== ====== ====== ========== ================================= 4 33 33 GTTTCAACCCACGCGCCCGCACAGGGCGCGACG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-10.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [23.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [496,1156] Score: 0.18/0.18 # # Final direction: F [1.15,0.45 Confidence: MEDIUM] >NC_015125 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 868066 23 100.0 28 NNNNNNNNNN .TG.................... CTCCACGCTGCCGTCGCGGTACGACCCG 868117 23 100.0 27 NNNNNNNNNN ....................... CTCGACCGCTCCGGCGCGGTAGTTCCC 868167 23 100.0 28 NNNNNNNNNN CG..................... GCTCTCGTCGCCCCGGGCGCTGGTGCCG 868218 23 100.0 28 NNNNNNNNNN ...............A....C.C CTCACGGGTCGCATCGCGGTACGTGCCC 868269 23 100.0 28 NNNNNNNNNN ....................... CGTCACGTCGCCCGAGGCGTAGGAACCC 868320 23 100.0 28 NNNNNNNNNN ..G.....C.............. CTCGACACCGCCGATCGTCGTCGAGCCC 868371 23 100.0 1 NNNNNNNNNN .................GC.... NNNNNNNNNN ========== ====== ====== ====== ========== ======================= 7 23 27 GACCCGTCGCCGAAGTTCTGGAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [21.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [472,486] Score: 0/0.18 # # Final direction: R [0.41,0.64 Confidence: LOW] >NC_015138 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1785782 32 100.0 34 CGGCCGGGCG ................................ TCCCATGGACCTCGCTGAGCAGTCACCCGGAGTG 1785848 32 100.0 35 ACCCGGAGTG ................................ GCACCAAAGAGGTGGGCAAACAAACCAACATTTAC 1785915 32 100.0 35 CAACATTTAC ................................ CTCCCGCCGATCAACCGCACGCTTGCGCTCACGGT 1785982 32 100.0 36 CGCTCACGGT ................................ CCAACATGGGGCAATGCCCCATACCCCCAAGTCAGG 1786050 32 100.0 36 CCAAGTCAGG ................................ CTGCACGGACTGCGTTGGCATGCGCCGCTCACCGAA 1786118 32 100.0 36 GCTCACCGAA ................................ GGCTTCCTCGGCCACGCTCGGCACGGCGTTGGCGAG 1786186 32 100.0 34 CGTTGGCGAG ................................ CGGCCAGCTGGTCCACGCCGCCGATGACGCGCGT 1786252 32 100.0 34 TGACGCGCGT ................................ CAGGTTCGCGCGGCTGCTAGTGTCACCCAGGGTA 1786318 32 100.0 34 ACCCAGGGTA ................................ AGCAGGCCGGCTACTCGTGGCAGGCAGCCAAAGC 1786384 32 100.0 33 CAGCCAAAGC ................................ GCGACCCAAGAGGCCGCGCAGAAGGGCGCAGCC 1786449 32 100.0 34 GGGCGCAGCC ................................ GCGCACCTCGTCGAACAGGGCCAGGCCGTCGCGG 1786515 32 100.0 36 GCCGTCGCGG ................................ GGATGGTGTTCACACCATCGACTACCAGGAGCTGGT 1786583 32 100.0 AGGAGCTGGT ................................ GGCACCTTTA ========== ====== ====== ====== ========== ================================ 13 32 34 GTTTCAACCCACGCGCCCGCACAGGGCGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.10,-8.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [21.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [830,222] Score: 0.18/0.18 # # Final direction: R [0.55,0.64 Confidence: LOW] >NC_015138 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 300343 36 100.0 30 NNNNNNNNNN .................................... TGAGGCAGCACGCGATTTCCGCCAGCAGGT 300409 36 100.0 30 NNNNNNNNNN .................................... GCTGGCAAAGTGGACCATGCTCCAACATGT 300475 36 100.0 30 NNNNNNNNNN .................................... CCAAGGTCACCGTGGCTGTCATGTCGCTGG 300541 36 100.0 30 NNNNNNNNNN .................................... TGCCGGTGGTCTATCGAGCGTAACGGCGCG 300607 36 100.0 30 NNNNNNNNNN .................................... TCGGATGCTCGCGTGCATCCATCGGCGATT 300673 36 100.0 30 NNNNNNNNNN .................................... GAAATGGCTGCAAAAGCCTTGGCAGTGGGC 300739 36 100.0 31 NNNNNNNNNN .................................... AGGATTGACCACACGATCAACCACAGCGCGC 300806 36 100.0 30 NNNNNNNNNN .................................... TCGTCGGTACCGGCGGATGCGGTTCCTGCG 300872 36 100.0 30 NNNNNNNNNN .................................... GGCCTGGTCCAGCACCCAGGCGCCGATCGC 300938 36 100.0 30 NNNNNNNNNN .................................... ACTCGCGCGGCGGAGGCGTACACCACCGGC 301004 36 100.0 30 NNNNNNNNNN .................................... ACGAACTGGGTTTCAACGCCGCGAGTACCG 301070 36 100.0 30 NNNNNNNNNN .................................... GCCGACCGCCACGCCTTGTCGCGCCGACCA 301136 36 100.0 30 NNNNNNNNNN .................................... AAGACTGGTGACATAGTTCAGTTCTTTTGC 301202 36 100.0 30 NNNNNNNNNN .................................... TGTGGCCGGGTGGTCACGCGGGCGGATCTG 301268 36 100.0 30 NNNNNNNNNN .................................... CTGCTGGTCTGCATGTCCGATGCAAATCCA 301334 36 100.0 30 NNNNNNNNNN .................................... ATGGCGGTGATCGTCTCCAGCGTCTGCTTG 301400 36 100.0 30 NNNNNNNNNN .................................... TTCCCGAAAACTTCCTGAATGGTCTGCGAA 301466 36 100.0 30 NNNNNNNNNN .................................... GCCCGTGGCCGCCACCCGCCGGTACACCTC 301532 36 100.0 30 NNNNNNNNNN .................................... TCCAGCGTCGGCGGTCAAACGATGCATCAC 301598 36 100.0 30 NNNNNNNNNN .................................... CTCATCGTAGAAGGGGATCACAAGCCGGGC 301664 36 100.0 30 NNNNNNNNNN .................................... TGGCTCAGCAACCATTCCTTAACTCTCATG 301730 36 100.0 30 NNNNNNNNNN .................................... TGCAGTGTCGTCAGGTCTATGACCTGAGCC 301796 36 100.0 30 NNNNNNNNNN .................................... AGGATCACTATTTTTCCAAGGCATGGCGCG 301862 36 100.0 30 NNNNNNNNNN .................................... GCCCCGCATAGAGACTTGCGTAATTTGCGC 301928 36 100.0 31 NNNNNNNNNN .................................... GTCGGGATGCACGTTTTGCAGCACGCCCGAC 301995 36 100.0 30 NNNNNNNNNN .................................... TGCAGTGCCAATTGGAGTGCGTGTGCTGCG 302061 36 100.0 30 NNNNNNNNNN .................................... GCAATCGCCAGCTTCGTTGCCACCGCCGAG 302127 36 100.0 30 NNNNNNNNNN .................................... AGGTCGGGCAGGCCATCGGCCAAGACCTGA 302193 36 100.0 30 NNNNNNNNNN .................................... AGCATGGTTCTGGCTGTGGCGGCCTGCGCT 302259 36 100.0 30 NNNNNNNNNN .................................... CCCGCGCCACGGCGATGCAGTACCGCGAAA 302325 36 100.0 30 NNNNNNNNNN .................................... ACCCTGGCAATCGCCGCACTGATCGGCGCT 302391 36 100.0 30 NNNNNNNNNN .................................... ATTGCGCGCATGCTCGTCGCTGATCATCGG 302457 36 100.0 30 NNNNNNNNNN .................................... AAGAGGGATGCGGCTATTGGTTTATTGACA 302523 36 100.0 30 NNNNNNNNNN .................................... CGAAACGGTTGCCACAGACGCAAGTTTCTT 302589 36 100.0 30 NNNNNNNNNN .................................... TGCGACCTGTTCCAAGGGCATCAACATGCT 302655 36 100.0 30 NNNNNNNNNN .................................... TGCATTTCTCATACTCCTGTTGCGCCGCGT 302721 36 100.0 29 NNNNNNNNNN .................................... CTAATTTGCGCCTGTCGATCCGAAGCCGC 302786 36 100.0 30 NNNNNNNNNN .................................... TCACCAGCGTGCAGGCCGCGGACCGCGCCG 302852 36 100.0 30 NNNNNNNNNN .................................... CCGGCAGATCGGATACGCCCACGGCGGGGT 302918 36 100.0 30 NNNNNNNNNN .................................... AAAGGCCGTAGGCCGAGCTGCAGGAAGTTG 302984 36 100.0 30 NNNNNNNNNN ...................G................ CGTCACGCCCTGCCGGTGTAGCGCGCCCGA 303050 36 100.0 29 NNNNNNNNNN .................................... CCGGGCGGCGGCCGACCCCGGGCGCTTCG 303115 36 100.0 30 NNNNNNNNNN .................................... CCTGGTGCTGGCCGCATCGGGCGCATTGCC 303181 36 100.0 30 NNNNNNNNNN .................................... GCACGCATGCGGCAATGCGACAGACAGCAT 303247 36 100.0 30 NNNNNNNNNN .................................... TCGAGTACGTGAAGGAAACCGGCTTCACGA 303313 36 100.0 30 NNNNNNNNNN .................................... CGGGGGTGTCGGGCTGCTTGTCGTGGGTGA 303379 36 100.0 30 NNNNNNNNNN .................................... TGGTGGCACGGACCGCGCCCCGACTGGTCC 303445 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 48 36 30 AGTCTAGATCACTGGGATATGCGCACTGGCCGGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [9,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.40,-3.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [73,45] Score: 0/0.18 # # Final direction: F [0.78,0.37 Confidence: MEDIUM] >NC_015138 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 305395 36 100.0 31 ATGACAGCGC .................................... GACGGCGAGTATCTAGGCAAAGTGGTACGTT 305462 36 100.0 29 GTGGTACGTT .................................... TCATACAAAAAGTTTTTCTGTCATACAAA 305527 36 100.0 30 GTCATACAAA .................................... CGGTTTCAATCGCATCGTTTTCGTAGCCAG 305593 36 100.0 30 TCGTAGCCAG .................................... CGAAGCTCGCGAAGGGGCAGCGCTGGGGTC 305659 36 100.0 30 CGCTGGGGTC .................................... TTATTTCCTCAGTGCAGGCGGGCGAATGGT 305725 36 100.0 30 GGCGAATGGT .................................... AGCGGTTTTACAGCCCAGAGGAGCAGCGAG 305791 36 100.0 30 GAGCAGCGAG .................................... TTCGCGTGCGCGGGGACTCAATGACAGCGC 305857 36 100.0 30 ATGACAGCGC .................................... GCGCCGCTGCCGCCATTGCCCACGCCATCG 305923 36 100.0 30 CACGCCATCG .................................... AGCGGTTTTACAGCCCAGAGGAGCAGCGAG 305989 36 100.0 30 GAGCAGCGAG .................................... GAGGTTACTGGCAAGTGCTCGGAGGGGTGA 306055 36 97.2 30 GGAGGGGTGA ......................A............. TCTATGGTTTCTCAGGCAGTAAAGAAGTCG 306121 36 100.0 AAAGAAGTCG .................................... TGTACCAGCG ========== ====== ====== ====== ========== ==================================== 12 36 30 AGTCTAGATCACTGGGATATGCGCACTGGCCGGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [9,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.40,-3.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [41.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [411,172] Score: 0.18/0.18 # # Final direction: F [1.23,0.37 Confidence: MEDIUM] >NC_015138 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 4426774 32 100.0 35 NNNNNNNNNN ................................ GAGCAGTGTTTGTCGCTTGCCAAATCGGCCCTTGA 4426841 32 100.0 34 NNNNNNNNNN ................................ CTCACCAGTTGCCCGAGCTGGCGGGCCATGCGGC 4426907 32 100.0 35 NNNNNNNNNN ................................ GATACGCTCTTGATCGCCAGCGAAATGCAGTAGCC 4426974 32 100.0 35 NNNNNNNNNN ................................ GCCCAGTGGCGCAGGCGTCCCCATCCTCGGCAAGG 4427041 32 100.0 35 NNNNNNNNNN ................................ GCCCAGTGGCGCAGGCGTCCCCATCCTCGGCAAGG 4427108 32 100.0 34 NNNNNNNNNN ................................ GCGCCGAACCTGCCGCAGTTCGAAAAGACGTGCG 4427174 32 100.0 35 NNNNNNNNNN ................................ CGTGGCGATGTCCATATGCCCGTCGCCGCCTCCCA 4427241 32 100.0 34 NNNNNNNNNN ................................ CTGCGCGCTGTGATGAACGACAGCGGCACCGAGG 4427307 32 100.0 36 NNNNNNNNNN ................................ CGTGGTGGTGCCGTGCGCAGAGCTGGCGCCGGCCGT 4427375 32 100.0 35 NNNNNNNNNN ................................ CACCAGCTTCCGGTACTGCGCCCGCGCGTCGGTAG 4427442 32 100.0 35 NNNNNNNNNN ................................ TTGCTGATTCCGTCCGCATCCAACCCGGCGAAGCT 4427509 32 100.0 34 NNNNNNNNNN ................................ TGGAGATCGTCCACGCGTCCCTTGATCTCGCGCA 4427575 32 100.0 34 NNNNNNNNNN ................................ ATTCCGTCGTTGAGCTTGAGCACGCCGGCCAGCG 4427641 32 100.0 34 NNNNNNNNNN ................................ AATCCACTGAAAGCAACCCATGACCTTTGAAATC 4427707 32 100.0 34 NNNNNNNNNN ................................ CCAGACCCGCGCAGTGACCCATCCGTCTTCGCTG 4427773 32 100.0 36 NNNNNNNNNN ................................ GACGTGGCGCAGCCGCGCCCAGTGGAGGGAGCGCAG 4427841 32 100.0 36 NNNNNNNNNN ................................ GGCAGGAGGTGGCGGCGCTGCGCGCTGCCGGGGAGG 4427909 32 100.0 36 NNNNNNNNNN ................................ GCTTCGATCTTGGCCAGAAGCTGCTGCGCCTGCTGG 4427977 32 100.0 35 NNNNNNNNNN ................................ GCGCCTTCATTGACCTGGACAACCCCGACCTGCCC 4428044 32 100.0 36 NNNNNNNNNN ................................ CGTCACGGTGCCGCACCGCCCAGGCCCGTGCGGCCC 4428112 32 100.0 36 NNNNNNNNNN ................................ GATGCCGTGTACCTCATGGCGCTGAATCCGGAGGCC 4428180 32 100.0 34 NNNNNNNNNN ................................ CATTCCACGATGGGCCGAAACTGCCAGTACCCGG 4428246 32 100.0 35 NNNNNNNNNN ................................ TTGGTCTGCCGGCCGCCGTCCTCGCGCCCCACCAG 4428313 32 100.0 34 NNNNNNNNNN ................................ ACCATTGGCGCGTCATGGGCCGGTGCTGCAAAAG 4428379 32 100.0 33 NNNNNNNNNN ................................ TGGTCATCACCATCACCGCCGCCCTGGGCCTGC 4428444 32 100.0 34 NNNNNNNNNN ................................ TCCTTATACGAGGCGGTTAATCTTCGGAATGCGA 4428510 32 100.0 34 NNNNNNNNNN ................................ ATCCACGACCACCAGCCCAGCGCCCCAGGCGTGT 4428576 32 100.0 35 NNNNNNNNNN ................................ ACCTGATCGCGAGTGGGCGCTGCGAAGAAATACCG 4428643 32 100.0 33 NNNNNNNNNN ................................ CAGATCCGTGCGGTGATCCATCCGTCCTCACTG 4428708 32 100.0 34 NNNNNNNNNN .......T........................ TTCCTGGAGCGCTTCCTGCGCGAGGAAAAGCTGC 4428774 32 100.0 34 NNNNNNNNNN ................................ GTTCTCCTCGGCCCCGCGGGCCATGGTTTGCTCT 4428840 32 100.0 33 NNNNNNNNNN ................................ CTCCACAAGGGGGGAACGTGTAGAGACTCGACG 4428905 32 100.0 35 NNNNNNNNNN ................................ CCGTTGACGACGAGCGAGTACCGGACCTGGCGGTA 4428972 32 100.0 34 NNNNNNNNNN ................................ ATTTTTGCACCTTGAATTGCCGGGGTACGCCGGC 4429038 32 100.0 36 NNNNNNNNNN ................................ CCGATGGGATCCGCCTGCAACCCAAGCGCCATGACC 4429106 32 100.0 43 NNNNNNNNNN .........................CGCGTGG GTTGAAACCGTACCTAAAGGTACGGAGCCTGGCAACCCCCCGC 4429181 32 100.0 36 NNNNNNNNNN ................................ ATCGCCAGGATGGCGGCCACCACTGCCGGCATGCTG 4429249 32 100.0 36 NNNNNNNNNN ................................ ATGGTGTGGGGCTGGTCGCTGATGCAGTCCCAAGGG 4429317 32 100.0 35 NNNNNNNNNN ................................ AATTCCGAGGCCTATGCCTACGGGTCGAGCATGCC 4429384 32 100.0 35 NNNNNNNNNN ................................ GCCCCCGACATCGGCCCCGCGCACAAGGACGACTA 4429451 32 100.0 35 NNNNNNNNNN ................................ CCCAGCCACTGCCAGCAACCTGAAACGGCCGCCGC 4429518 32 100.0 35 NNNNNNNNNN ................................ CGTGACATCGGGCTGCGACGCAGCCGCGAAAGCCG 4429585 32 100.0 34 NNNNNNNNNN ................................ GCTTCGGCCGTCAAGCGCGTCACCTCGATCTGGA 4429651 32 100.0 34 NNNNNNNNNN ................................ CAGCTCGAAGGTTTGGAAGCGCCCGTAGCGAAGG 4429717 32 100.0 35 NNNNNNNNNN ................................ CGCCGTGCGGACGGGAAGCCCTGGGGCTTGGCTGG 4429784 32 100.0 35 NNNNNNNNNN ................................ TCGGCCATGATGGACGCGATCGCTCTCGGCGGTGT 4429851 32 100.0 34 NNNNNNNNNN ................................ AACTACTGGCGCACGGCCTCTACCGAGCTAGTAG 4429917 32 100.0 34 NNNNNNNNNN ................................ CTCGCTTGGCGCCGGTGGCTTGCTCGATGGCCTC 4429983 32 100.0 35 NNNNNNNNNN ................................ GACATCGAGGCCAAGGTCGGCGACAAGGCCAAGGC 4430050 32 100.0 35 NNNNNNNNNN ........................A....... TCTTTCGGCGTCCTGCTCAGAGCTGCCTTCCACCG 4430117 32 100.0 34 NNNNNNNNNN ....................A........... TTTCTTTTGGCTGCCTTGGCCGGCCTCGGGCAGA 4430183 32 100.0 1 NNNNNNNNNN ....................C...A....... NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 52 32 34 GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-12.40,-11.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [223,108] Score: 0.18/0.18 # # Final direction: F [0.96,0.37 Confidence: MEDIUM] >NC_015151 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 1377767 25 100.0 42 NNNNNNNNNN ......................... ATTGTTTCCTTCATATACGGCTGGGAGACACGTGATTCCACC 1377834 25 100.0 40 NNNNNNNNNN ......................... GACATTGTTTTTCAACTTGCCAGTATCACGCCCGTCTCTG 1377899 25 100.0 53 NNNNNNNNNN ......................... CTGCAAGGTAATCAGCAAGTCAGTCAGCAAGTCAATCAAGGTAGGGCTACCGT 1377977 25 100.0 42 NNNNNNNNNN ......................... GGACGAGCCGAAGCGTGCTGATGAAATACTCACGAGTGTTTT 1378044 25 100.0 44 NNNNNNNNNN ......................... ACGCCTTCACCCTATCACCAAGCGTGTAAAAACCACCGTTCTTC 1378113 25 100.0 38 NNNNNNNNNN ......................... ATGTTTTCCTGACCCTCAAACCACGAGTACAGGTTGGG 1378176 25 100.0 49 NNNNNNNNNN ......................... CGACTTCATTAGGGAGAACAAGGATGAAATCGTGAGGGTGCTGGACGAG 1378250 25 100.0 45 NNNNNNNNNN ......................... TCACCACGGTGATTGTCTACACACTCACCCTGCAGTTGAGGGGTG 1378320 25 100.0 47 NNNNNNNNNN ......................... ACAATGTGCTCGTGATTAACATATACCCCTCTAACCTAGGTCCGAGG 1378392 25 100.0 45 NNNNNNNNNN ......................... GGAAGGAAGCCATGCAATTAATCAAGGGTTTAATAAACGTGAAGC 1378462 25 100.0 48 NNNNNNNNNN ......................... AAAAAAATCACTGTGTGAAACTATGACTTTCTTACCATCCTTAGTGTA 1378535 25 100.0 46 NNNNNNNNNN ......................... AAACTGCCCCTGCAATTGACTGCTCATTAACTGTAGTGACTGCACG 1378606 25 100.0 47 NNNNNNNNNN ......................... CTCATTGCTGTACAGGTTAATGAATGCCTCGGCATTCCTGAGGACGT 1378678 25 100.0 51 NNNNNNNNNN ......................... TCATTTCTGGGGTTTTGACCTTCCATTTGTACTGGGGTTGAAGTTCTGCCG 1378754 25 100.0 41 NNNNNNNNNN ......................... CCACTCACGTAATCACCAACACCATTATGGTTATTCGTTGC 1378820 25 100.0 45 NNNNNNNNNN ......................... GCAGCCGCTAGACTACCCGCAATACCTGCAGCCTCACCAATCGTG 1378890 25 100.0 44 NNNNNNNNNN ......................... ATCAGATATATCCATCAACCTAGAGGCCGGAAGGTACGTGAACA 1378959 25 100.0 44 NNNNNNNNNN ......................... CCGTGATTGTGCACGTCGCCCCCGTGGGGCTCGCCATGAGTATG 1379028 25 100.0 48 NNNNNNNNNN ......................... GTAATCATTCCAAAGGAAAAGCCCATCATCATTAATGAAAACAATAAT 1379101 25 100.0 50 NNNNNNNNNN ......................... GGAATCATTGCACATGAACATTACGGTGATGGTGCATGACGGTCATATTC 1379176 25 100.0 45 NNNNNNNNNN ......................... TAACCGTCATGTTAAGCGTGAACACCGGCGCGGAGCTACTTGAAC 1379246 25 100.0 52 NNNNNNNNNN ......................... CTTGATGACACATAGATAAAATAAAGCAATGCGATGTCAATCCCAATGACCT 1379323 25 100.0 42 NNNNNNNNNN ......................... CTCTCCCTCTGCTTGAATACGTAGGGTACCTCGATGATCCTC 1379390 25 100.0 47 NNNNNNNNNN ......................... ACTTCACGTGCCCAAAGTGCGGGAAGCCAACCATAGGCTTTGCGCCC 1379462 25 100.0 44 NNNNNNNNNN ......................... ATTACAGTACTGCTTGTCGAAACAAAGCAGTAAGTCATGTATTT 1379531 25 100.0 44 NNNNNNNNNN ......................... CATATTGGACAACGTAGCCCGAGCTTTCCAATCATTTCAGCACG 1379600 25 100.0 47 NNNNNNNNNN ......................... ATCTTCGATATCCTCGAGCAGAAGAACAGCGAGCCCGGCGCGAACAG 1379672 25 100.0 47 NNNNNNNNNN ........................G AATGACCTCACTCCTACTTGGGAATAAGCCAGCGTATACGAGCCCAT 1379744 25 100.0 45 NNNNNNNNNN ........................G ATACGCATCTACATTGATTTGGCAGTGGTTTAACGTGACGTATAA 1379814 25 100.0 47 NNNNNNNNNN ........................G ATAAGAGCTACATACATAGACTTTGGAGGGATAGTTTGGCATATCAC 1379886 25 100.0 1 NNNNNNNNNN ...G..T...G.....G..G..G.G NNNNNNNNNN ========== ====== ====== ====== ========== ========================= 31 25 45 GATATTCTCTAAAGAGAATAGAAGT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.50,-2.30] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [201,58] Score: 0.18/0.18 # # Final direction: F [0.59,0 Confidence: HIGH] >NC_015144 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================================== ====== 1975390 50 100.0 30 ATTGATTTAT .................................................. CTTTGTGCAATGCCGAGTTCGGTGCTTCAT 1975470 50 100.0 30 GGTGCTTCAT .................................................. TGTATTTCATAAATTTATCTAATCTCTCAA 1975550 50 100.0 30 AATCTCTCAA .................................................. GGAAACGGGCGTCGGTGAAGTCATCGATAC 1975630 50 100.0 30 TCATCGATAC .................................................. TGTTTATAACAAGCTAAGAGGGTGGAAGTC 1975710 50 100.0 30 GGTGGAAGTC .................................................. TACTCCATCATGCGTTATCGATCCCGATAA 1975790 50 100.0 30 ATCCCGATAA .................................................. ATGTAGAATATGAATCAGATAGAGATGCAA 1975870 50 100.0 30 AGAGATGCAA .................................................. TCTGAAATTCAGATGCCTGTTTTACTTTAT 1975950 50 100.0 30 TTTACTTTAT .................................................. ATATTATTTTGAGAAAACTTATAAATCATC 1976030 50 100.0 30 ATAAATCATC .................................................. TCGCCATTGGTTTGGACGCCTTGTGCCCAT 1976110 50 100.0 30 TTGTGCCCAT .................................................. TCGCTTCGGTATTGACCGAAATAGCCCACC 1976190 50 100.0 30 ATAGCCCACC .................................................. ATAAAACATTTCAAACAAAATTCTTTAAGC 1976270 50 100.0 30 TTCTTTAAGC .................................................. TATTAATTCAAGCATAATGTTTTGATGGTT 1976350 50 100.0 30 TTTGATGGTT .................................................. AAGTAGATCTTGATTTTATAGCTGGCTATA 1976430 50 100.0 30 GCTGGCTATA .................................................. GCACTGAATATGGATATCCAGACGATCGTC 1976510 50 100.0 30 GACGATCGTC .................................................. TTTATAGCAGACGTAGAGGTTGTGGTAAGT 1976590 50 100.0 30 TGTGGTAAGT .................................................. GTACTTGCCGTTCGGTCTTGCGTGGTATAC 1976670 50 100.0 30 CGTGGTATAC .................................................. CAGTTTCTAATCCAACGCTGAACGTTGATA 1976750 50 100.0 30 AACGTTGATA .................................................. GTGGAGTATTTGCTTAATGCCTTTGTTGGC 1976830 50 100.0 30 CTTTGTTGGC .................................................. GCTCAATATATCCAAGAGCAACACAATGGT 1976910 50 100.0 ACACAATGGT .................................................. CTTATATAAA ========== ====== ====== ====== ========== ================================================== 20 50 30 GTTGTGAATTCCTTTCAAATTTTTGTAGATTTACTCAGTAGAATTACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.90,-1.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [244,105] Score: 0.18/0.18 # # Final direction: R [0.18,0.37 Confidence: MEDIUM] >NC_015151 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 1452274 25 96.0 46 CATCGCACTT .......C................. AAGCCCTACCAGGCGGAGCAAATGAGGGTAGAGGAAGTAGTGAGGA 1452345 25 100.0 51 GTAGTGAGGA ......................... AAATTGGGATGCGATTATGGTGATGGTGAATGAAACTAAAGTGTGTAGACC 1452421 25 100.0 42 TGTGTAGACC ......................... AAGTGGCAATGGCATCGCCACTTTCAAGACCGTCAGCGTTCA 1452488 25 100.0 44 TCAGCGTTCA ......................... CATTATTTTGATAAAGACCCTGTAAGTGACGGTTACATAGACAT 1452557 25 100.0 43 ACATAGACAT ......................... TAACCACGAGATTATTTTTCAGATTGCTAGTTTATTTCCGTAG 1452625 25 100.0 45 ATTTCCGTAG ......................... TATTGAACCGTCAGCGTTGTTGTAGCCGTGGATAATGATTGCGTT 1452695 25 100.0 47 TGATTGCGTT ......................... TACAAAAACGAAGTCAACGAATTTTGGGAACTGTGTAAAAATAATCC 1452767 25 100.0 42 AAAATAATCC ......................... TGGGTAAGTAGCATCACCAGCCACAACACAAGCAGGTTCACG 1452834 25 100.0 45 CAGGTTCACG ......................... AAGGAGGAGCACGGTGACGACCCAAGGGGCGAGCTCTTCATGATA 1452904 25 100.0 44 CTTCATGATA ......................... ATGGAGAGCTGTTTGATAAGGCGTTGAAGTGGTGGAATTCACGC 1452973 25 100.0 44 GAATTCACGC ......................... CTCAACAATCTCCTTACACGGGAGTCATAAATCCTGGATCATAT 1453042 25 100.0 44 TGGATCATAT ......................... AATGTTTTCAGCCTCGTTGTACGTGGGAATCACCGTACAAAGAT 1453111 25 100.0 GTACAAAGAT ......................... TGATTCGCCA ========== ====== ====== ====== ========== ========================= 13 25 44 CTTTCAATATTCTATTGAAATCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [803,230] Score: 0.18/0.18 # # Final direction: R [0.18,0.41 Confidence: MEDIUM] >NC_015151 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 1469790 25 88.0 47 CAATCAATCC --.....C................. TTGATAATAATCAAGCCCGATGGTTCACTACTTGTTCATACTAATGA 1469862 25 96.0 46 ATACTAATGA ...........T............. CTGTTTGAGCTTGTGCCTGCTATTTTGGCGCGAGACATACATAAGG 1469933 25 100.0 49 ATACATAAGG ......................... TCTACACGGCGTACACTCTCGACCCGACGAGCGTCAAGGACTGCGAGAA 1470007 25 100.0 44 ACTGCGAGAA ......................... GAAGAATTGCGTGAGGTGATGGTGCGTGGCACAAAACAATTGGA 1470076 25 100.0 42 AACAATTGGA ......................... ACGAATTGAACGATATTGTAGCAAATATGCGCGACATTGCAA 1470143 25 100.0 43 GACATTGCAA ......................... ACCCAGAGGAAAGCATTGAGGAATACTGTGATTGTGAGTGTAG 1470211 25 96.0 42 GTGAGTGTAG .......C................. CGTGATAGTTATGTCAGAGGGAAAGGCAAGCGTGAAGGAATG 1470278 25 100.0 47 TGAAGGAATG ......................... TTAAGACTTATTCAAAAGCAGCGCTGCCTGATGGGAGAGTCCTTAAT 1470350 25 100.0 48 AGTCCTTAAT ......................... ACGAAGAACCACGGTTTTCCAATATCCGTTGACGACTTAATACAGTAC 1470423 25 100.0 47 AATACAGTAC ......................... AAGGTACATAATAGTGATGTCAGAGCAGTACCTGGACTTCTTGCTTA 1470495 25 100.0 49 TTCTTGCTTA ......................... GAAACGTGATAATTGAAATATACCAAAATGAATCATGTGTGTGTAACTG 1470569 25 100.0 42 TGTGTAACTG ......................... CGTACTGCTCATTAACCGCCGCAGGCTGTGTACCTATTGGCG 1470636 25 100.0 48 CCTATTGGCG ......................... CCGAGGACAATATGGGTACCGACCTAGGTGGTGGAGCCACAATGTATG 1470709 25 100.0 47 ACAATGTATG ......................... TGAAAACACATGACCACAACCCAAACCGAAAACCTTGGGGAAACCCA 1470781 25 100.0 42 GGGAAACCCA ......................... TCCTGGGAATCCACATTACATTGCAAGTGTGCAGATTATAGA 1470848 25 100.0 AGATTATAGA ......................... CGATTCGCCA ========== ====== ====== ====== ========== ========================= 16 25 45 CTTTCAATATTCTATTGAAATCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [210,221] Score: 0/0.18 # # Final direction: R [0,0.41 Confidence: MEDIUM] >NC_015152 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2892376 28 100.0 33 TAACATCAGT ............................ GAAAAGATCGTGTTTCTGTTCCAAGTATTGGGA 2892437 28 100.0 33 AGTATTGGGA ............................ TTATTGACTAGTACAATGGAGGGAAGTTAAAAC 2892498 28 92.9 AAGTTAAAAC ..........................GT ATGCATGT ========== ====== ====== ====== ========== ============================ 3 28 33 GTTTTCCCCGCTCACGCGGGGGTGTTTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-12.50,-13.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [434,83] Score: 0.18/0.18 # # Final direction: F [0.86,0.74 Confidence: LOW] >NC_015151 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 1482144 24 95.8 44 ACATGATACG ......C................. GAAAATGGGTAAGGCGCTATTCATGACCGCAGACGAATTCAAGG 1482212 24 100.0 40 GAATTCAAGG ........................ CTGGCAGTAATTAAGGAATCCATTAACGCGGTTGTGCATC 1482276 24 100.0 41 GTTGTGCATC ........................ AATATGTTGATGTACCACCGCCCCAAGTCCTTGAGGTTGTC 1482341 24 100.0 TGAGGTTGTC ........................ CGTTTCGTTG ========== ====== ====== ====== ========== ======================== 4 24 41 TTTCAATATTCTTTTGAAATCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.17%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [65.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [208,596] Score: 0.18/0.18 # # Final direction: R [0.27,5.09 Confidence: HIGH] >NC_015152 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2363731 36 100.0 30 NNNNNNNNNN A.AAAAAT.TG.......A............A.... TACCCAGATGTCTGGAGGGTTATATACCCC 2363797 36 100.0 30 NNNNNNNNNN ...............................A.... AGAAATGGCCGTGTGGAGATCAACAACATC 2363863 36 100.0 30 NNNNNNNNNN .................................... TTGCCGCACCGATTGACGCGAAGCACGCCA 2363929 36 100.0 30 NNNNNNNNNN .................................... ATCCATAGTGGATGCCCTTCCTGTTATGCC 2363995 36 100.0 30 NNNNNNNNNN .................................... GAGCTTTCGGAGGCCAGGACAGCCCTCAAG 2364061 36 100.0 30 NNNNNNNNNN .................................... ATTCCGGCCTACCAGCCGCTCTTACTTGCG 2364127 36 100.0 30 NNNNNNNNNN .................................... CCACGTCGAAGGGATTGCCCGTCTCGGTGG 2364193 36 100.0 30 NNNNNNNNNN .................................... CTTCCTTGTCTGCCATCAGTCGTGTGGCTT 2364259 36 100.0 30 NNNNNNNNNN .................................... AATCCTACCTCCGATTATACACGATTGATT 2364325 36 100.0 30 NNNNNNNNNN .................................... CTATAGAACGTTGGATGCTGAGTTTGGTTT 2364391 36 100.0 30 NNNNNNNNNN .................................... TACTTTCGCTATAGTCGGGCTACCGCCTAG 2364457 36 100.0 30 NNNNNNNNNN .................................... ACAAATCCCATATCCAACGCCAGCAGACGT 2364523 36 100.0 30 NNNNNNNNNN .................................... CATGTTCGACGCTGACGAGGAAGGAAACTC 2364589 36 100.0 30 NNNNNNNNNN .................................... GCCGATGTCGTGTATACGGACAAGGAAAAT 2364655 36 100.0 30 NNNNNNNNNN .................................... GACAGCCCCCCTGCATCCCATTGGCTCTTT 2364721 36 100.0 30 NNNNNNNNNN .................................... CTTGCTGACTTCCCTGCTCTCTCCCTTGTC 2364787 36 100.0 30 NNNNNNNNNN .................................... GATTGTATCAAATCTCTCAGATACGGATGA 2364853 36 100.0 30 NNNNNNNNNN .................................... TGAGAGCGTCAAACACTTGTGTAGGATACT 2364919 36 100.0 30 NNNNNNNNNN .................................... ATCTCAAGCCGGTGGCAGACAAGATCGACG 2364985 36 100.0 30 NNNNNNNNNN .................................... GTCAACACCTTTCATTCGCAAGTACAAATC 2365051 36 100.0 30 NNNNNNNNNN .................................... ATCACGGGAGGTATAACAATGATTAGTTAT 2365117 36 100.0 30 NNNNNNNNNN .................................... TGTTAATAGGTACTGAAAACTTCGAAATTC 2365183 36 100.0 30 NNNNNNNNNN .................................... CATATGAGAGAGATTGGCATTGACCGCCCA 2365249 36 100.0 30 NNNNNNNNNN .................................... CAACGAATGGATCATCAATCGGGTGTTCCG 2365315 36 100.0 30 NNNNNNNNNN .................................... TCCTGTACTGGCAATAGACTCATGATCCAC 2365381 36 100.0 30 NNNNNNNNNN .................................... ACCGAGTCTAAAGCTGTTGTTCCTGTACCT 2365447 36 100.0 31 NNNNNNNNNN .................................... GAAGGGAGTGCTGTAGATGAAAGATATGTTT 2365514 36 100.0 30 NNNNNNNNNN .................................... GGAAGCATGTACTTGACCCAGTTCGCCGTT 2365580 36 100.0 30 NNNNNNNNNN .................................... TGCATTTAAACTTTTAATCAAACCATATAC 2365646 36 100.0 30 NNNNNNNNNN .................................... TCCATTGCTTGCGAGGAAGTGTCACCGTAT 2365712 36 100.0 30 NNNNNNNNNN .................................... GCAAGGGAAGAGACATACAAAGCTAATGAG 2365778 36 100.0 30 NNNNNNNNNN .................................... TTTTCTGTTTATTTTACCGTAGATAAAACA 2365844 36 100.0 30 NNNNNNNNNN .................................... AGCCTTTGTGCATATTCATACATGAGTTCA 2365910 36 100.0 30 NNNNNNNNNN .................................... TGCAATGTATTGTTTCATGCAATCCTTCCT 2365976 36 100.0 30 NNNNNNNNNN .................................... TTTTTTAACGGTATTACAGCGCGTGATTTC 2366042 36 100.0 30 NNNNNNNNNN .................................... ATATTGAGGATCTCGTATCGAGGGCATTGC 2366108 36 100.0 30 NNNNNNNNNN .................................... ACAAGATAGAACAGAAGGGCAAGGAAGCCA 2366174 36 100.0 30 NNNNNNNNNN .................................... TCTTGCAATATTCACTCGTCACTTCGCCTA 2366240 36 100.0 30 NNNNNNNNNN .................................... GAGCACCTTGTCTATATGCTCCACCAGCTT 2366306 36 100.0 30 NNNNNNNNNN .................................... GAGGATGAGGTTGTACTGGAGTCTGTCTAT 2366372 36 100.0 30 NNNNNNNNNN .................................... AATGACACGTTCACGGCATGGAGGCAACTG 2366438 36 100.0 30 NNNNNNNNNN .................................... ATGTGATGGTCGCGGCTCCGGCTCTTGAGT 2366504 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 43 36 30 GTTGGGGATGACCGCTGATTTTTGTTAAGATTGACC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [81,214] Score: 0.18/0.18 # # Final direction: R [0,0.59 Confidence: HIGH] >NC_015160 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1524050 30 96.7 37 GTTGAGTCCA ..............C............... TAGGAATAAACCGTACCCAACCACGTAGCCATATACG 1524117 30 100.0 36 GCCATATACG .............................. CGCCGGGCATGGTTTCGGTGGTTTCGGGGAAAGTGT 1524183 30 100.0 37 GGGAAAGTGT .............................. GGGGTGAATCCACCGGTTTTCATTCCATGGGGAAAAA 1524250 30 100.0 36 TGGGGAAAAA .............................. GGTGGTGCCGCATGAAAACTGCGTGGACAGAAAAAT 1524316 30 100.0 37 ACAGAAAAAT .............................. GGATTTCCACAAGCTTATTTTTCTGGGACATTCTCCA 1524383 30 100.0 37 ACATTCTCCA .............................. AAGCCACCATTTCCCCATCCGTTGTTACCCCAACCCA 1524450 30 100.0 36 CCCCAACCCA .............................. GGGATTGAAGGTATCAATGAACTAACCGATCTGGCA 1524516 30 100.0 36 CGATCTGGCA .............................. GAGTATTGCAGAATGGCGTTTAGCTATCGGTATGGA 1524582 30 100.0 36 TCGGTATGGA .............................. ACTCATTCTTTAAAAGAAAAAACATGGAAAAGACAT 1524648 30 100.0 36 GAAAAGACAT .............................. GAAGGAGCAAGCGGATGCCAGAAAAGCGGTTGTGGA 1524714 30 100.0 35 CGGTTGTGGA .............................. CTTAAAGTAAAAGAAATACAGGTATTAAAAGAAGA 1524779 30 100.0 36 TAAAAGAAGA .............................. AGCAGATGTCGGAATATGTAGAACAGTCAAAATCAA 1524845 30 100.0 36 TCAAAATCAA .............................. TAATTTATTTCACCTTCACTAGTGTATTTTCTTCCA 1524911 30 100.0 36 TTTTCTTCCA .............................. ATGGGTCAAAGGTGTGAGAGAAATACTTAACCTAAA 1524977 30 100.0 36 TTAACCTAAA .............................. CTCTTCCGGTTATGACGCTAAGATCGGCTCTTCCGG 1525043 30 100.0 37 GCTCTTCCGG .............................. CTGTAACCGATGTACAAAATCCTCTTCCCCTTCCTTG 1525110 30 100.0 35 CCCTTCCTTG .............................. GGATTAAAATTTTAAAGGTATCTAATTCGATACCT 1525175 30 100.0 36 TTCGATACCT .............................. ATTATTATGTGATATAAAGGAAATTGCAAAATTTTC 1525241 30 100.0 36 CAAAATTTTC .............................. AATATGAAGTATATTTGCTTTATAGAATAAAGGCAA 1525307 30 100.0 36 ATAAAGGCAA .............................. CAATTCGTTGTATTATATTCAATGTGAAATATAAAA 1525373 30 100.0 36 AAATATAAAA .............................. CAGAGAAGATGCTAGAGTTGCATTACAAAGATGGTA 1525439 30 100.0 37 AAAGATGGTA .............................. TATCCTTTTATTTATTTGTTTTCAAAGTAGGTAGAAT 1525506 30 100.0 37 TAGGTAGAAT .............................. TCAACTTCGTAATAAGGGATAAACTCATTTTTATAAG 1525573 30 100.0 36 TTTTTATAAG .............................. CGAGAACAGGCCGCACATGCTTAACACCGTGAAAAG 1525639 30 100.0 36 CCGTGAAAAG .............................. AGATTTACAATAAAGGTCAGAAGGAGATTGCTCAAA 1525705 30 100.0 36 ATTGCTCAAA .............................. GATAATTACCAGTCGGAGCAAAGTTACCTGAATTCA 1525771 30 100.0 36 CCTGAATTCA .............................. GTCTCCGGCTGAAGTCGATGCTTGGATGGTTTCTCT 1525837 30 100.0 36 TGGTTTCTCT .............................. GATAATTACCAGTCGGAGCAAAGTTACCTGAATTCA 1525903 30 100.0 36 CCTGAATTCA .............................. GTCTCCGGCTGAAGTCGATGCTTGGATGGTTTCTCT 1525969 30 100.0 36 TGGTTTCTCT .............................. CTTATCAACCGAGCGTTGGTTCGAATGTTTACACAT 1526035 30 100.0 36 GTTTACACAT .............................. TGACCAGTAATCACATAATCCAAAAGCGGAACAACG 1526101 30 100.0 37 CGGAACAACG .............................. ATTCCCAGAATCAGTGGTCTTTGGATCAGTGGAACCG 1526168 30 100.0 37 AGTGGAACCG .............................. GGTTGTATTCATATGAATACTGATGTAAATCTTCTTA 1526235 30 100.0 36 AATCTTCTTA .............................. TACTTGTTTTCGTATTGGAGGTTCTGCGTCTAATAT 1526301 30 100.0 37 CGTCTAATAT .............................. ATGCAGGAATTATTTTCGAAACGCGAGAGTAATTCTT 1526368 30 100.0 36 AGTAATTCTT .............................. AATCGATTCTTAATTGTAGCCAAAGACAACATGCCT 1526434 30 100.0 36 CAACATGCCT .............................. GAAATATTGTTATTTTGTTAGTCTCACTTATAAAAA 1526500 30 100.0 36 CTTATAAAAA .............................. TAGTGATTTTCGCAAAGCACAGATAGCGAGTCTTAT 1526566 30 100.0 36 CGAGTCTTAT .............................. TCAAAATTATACGTATAAGGCTCGTTTTTCTCCCAT 1526632 30 100.0 37 TTTCTCCCAT .............................. TCACTTTTGCATAGTAAGGACAAGAAGAGTGAATCGA 1526699 30 100.0 36 AGTGAATCGA .............................. TAGCACGAAAGGCAAAATTTTAAAAGGGAAAAGTTA 1526765 30 100.0 36 GGAAAAGTTA .............................. TCAAAATTATATGTATAAGGCTCGTTTTTCTCCCAT 1526831 30 100.0 36 TTTCTCCCAT .............................. TAATATCCACAATTCTGAGCAGGGCGAATTATTCTT 1526897 30 100.0 37 AATTATTCTT .............................. TGTCGGGAGCAAATAAAATAATCCTTTAATAGAAACA 1526964 30 100.0 36 AATAGAAACA .............................. GCCGCCATGATTTTTCAAACTCTTTTGCGGAAGAAG 1527030 30 100.0 36 GCGGAAGAAG .............................. CATATCTATTGTTATATTTTTACAATGCTCTACTAT 1527096 30 100.0 36 GCTCTACTAT .............................. ACAAACAACCCGATTTGCGGAACCCGGTGCAAATGT 1527162 30 100.0 35 GTGCAAATGT .............................. CTTGATTGCGCCGATTGCGCCGTTTTCGTCGAAAA 1527227 30 100.0 36 TCGTCGAAAA .............................. TAGTACAAACCTATCATTTTGCTTTGTGCAATATAT 1527293 30 100.0 36 TGCAATATAT .............................. GTTTTTCAAGACGGAAATAAACAGCGTCTTAATAGT 1527359 30 100.0 36 TCTTAATAGT .............................. TGTTTTGGATTGTCTTAACCTCCTGTTCCGTCATTT 1527425 30 100.0 36 TCCGTCATTT .............................. CCGGAATATTTATGCGATGCAATGCGTATAATCCGA 1527491 30 100.0 36 TATAATCCGA .............................. TTTGTGCAGTCGTTCAATTAAAGCAACTTTGAAATA 1527557 30 100.0 36 CTTTGAAATA .............................. ACTTATCGCCCCGTTCGCTAAAAACGCATTTACAAA 1527623 30 100.0 36 CATTTACAAA .............................. TTTTAAATTTGCCGTCCTCAATAAACCAATAGCATT 1527689 30 100.0 36 CAATAGCATT .............................. GTATTTGTGCATACATAAACAGCATTCCCGATAAGT 1527755 30 100.0 36 CCCGATAAGT .............................. TTTCCACGAATGGGACGTTGTACGTTTGCCGTACAT 1527821 30 100.0 36 TGCCGTACAT .............................. CAATTGCGTTTCCCTGTATCTCGGTTGTGTCAACCG 1527887 30 100.0 36 GTGTCAACCG .............................. CAATTTGCAGAAACCGGCTTGCGGGCGTTTTTAAAA 1527953 30 100.0 37 GTTTTTAAAA .............................. TGAGGTTTACAAGAATTTAACACGTAAAATAAAGAAT 1528020 30 100.0 38 AATAAAGAAT .............................. CCGGTTGTTGGATATACTCAAAAAATACTATTCGCAAA 1528088 30 100.0 37 TATTCGCAAA .............................. CAACTTTGCCCGGTTCGCCTCTAAATCGTCTAATTCT 1528155 30 100.0 36 GTCTAATTCT .............................. TCACCATAAATAATTGTACTATGTTATTCAAAGTAT 1528221 30 100.0 36 TTCAAAGTAT .............................. TCAAAATTATACGTATAAGGCTCATTCTTCTCCCAT 1528287 30 100.0 36 CTTCTCCCAT .............................. ATGGCTTTCTCTGCCATAAAGATTTATCTTTATTTA 1528353 30 100.0 35 TCTTTATTTA .............................. CAGCCGTATTTACAGGCTGGGTACGAGTAAACAAT 1528418 30 100.0 35 AGTAAACAAT .............................. CTAAGCCGAGAACAGGCCGAGTGTGCTTAACACCA 1528483 30 100.0 36 CTTAACACCA .............................. TGTTCTCGGCTTAGCGATGGACCAGCAGTTTGAGTT 1528549 30 100.0 35 AGTTTGAGTT .............................. ACAACGTCACCAATAAGATTAGACGAATCAGAAGA 1528614 30 100.0 37 AATCAGAAGA .............................. TCGTCAATAAGTTTTACACTGAATGTCAACATAAACA 1528681 30 100.0 AACATAAACA .............................. CCGTTAAAAA ========== ====== ====== ====== ========== ============================== 71 30 36 GTTTCAATTCTACCTTAGTTCAATTAAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:73.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.40] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [58,220] Score: 0.18/0.18 # # Final direction: R [0,5.36 Confidence: HIGH] >NC_015161 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 385086 29 100.0 32 GGGCTATGAA ............................. GTGATTCCGAAGTAGTCAGACAGCGAAACGAG 385147 29 100.0 32 GCGAAACGAG ............................. CGCCTCCCACATCGAAGAGTTGCTGGCCCGCA 385208 29 100.0 32 CTGGCCCGCA ............................. GGCGCCGCTGGCCGCTTTGCCGCTCTGCGCAC 385269 29 100.0 32 CTCTGCGCAC ............................. AAATTCTTCCCGAAAAAAGCCGACTGGGACAG 385330 29 100.0 ACTGGGACAG ............................. ACTTCTCCTG ========== ====== ====== ====== ========== ============================= 5 29 32 CGGAACATCCCCGCCTGCACGGGGAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-9.00,-11.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [3,91] Score: 0.18/0.18 # # Final direction: R [0.37,0.55 Confidence: LOW] >NC_015163 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================== ====== 46414 21 100.0 46 NNNNNNNNNN ..................... CGGCCGATTTATCGACGACATAGTTGAGCGATTGTGCTTTCTCTGC 46481 21 100.0 34 NNNNNNNNNN ..................... CGGGGGTAGGGCCACGACATAGTTGAGCGATTCT 46536 21 100.0 34 NNNNNNNNNN ..................... GGCCACGACATAGTTGAGCGATTCGGGGGTAAGG 46591 21 100.0 34 NNNNNNNNNN .T.............A..... TGGCCCCTCCACCGACGACATAGTCGAGCGATTA 46646 21 100.0 1 NNNNNNNNNN ...................AA NNNNNNNNNN ========== ====== ====== ====== ========== ===================== 5 21 37 CGACGACATAGTTGAGCGATT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.38%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [43.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1355,122] Score: 0.18/0.18 # # Final direction: F [0.59,0.27 Confidence: MEDIUM] >NC_015170 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 53434 28 100.0 33 CAATTTTGTT ............................ CCAACGCCGAAAACGCCGCCGAGTTTAGCGCCC 53495 28 100.0 33 TTTAGCGCCC ............................ CGGCACCCAGCGCGGCCCGGTGGCCCTGGAGTA 53556 28 100.0 33 CCCTGGAGTA ............................ TACGCGGCGGCGTTTAAGGGGCGGAAGCAGGTC 53617 28 100.0 33 GAAGCAGGTC ............................ TGCCGAATCAGAATCCTGAGAGGGTGACGAGGC 53678 28 96.4 33 GTGACGAGGC .............A.............. TTCCCCAAGACTGATGCCGTGGCTGAAGGTTAC 53739 28 96.4 TGAAGGTTAC .............A.............. ACCAGTTGTT ========== ====== ====== ====== ========== ============================ 6 28 33 GGAACATCCCCGCCCACACGGGGAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [9,1] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-9.00,-11.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [117,329] Score: 0.18/0.18 # # Final direction: R [0.37,0.55 Confidence: LOW] >NC_015169 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 197312 37 100.0 37 NNNNNNNNNN C.A.GGCGTTGT.T....................... CTGCTGACCAGCGGCGAGGCGCTGACCCCGCAGGAAA 197386 37 100.0 36 NNNNNNNNNN ..................................... GGTTTTGTGCGGGCCTATTCGCCAAGCATCATTCAT 197459 37 100.0 36 NNNNNNNNNN ..................................... ACGCTGATTCCAGGCACAGATAAGGTCTACATCCCT 197532 37 100.0 36 NNNNNNNNNN ..................................... AAGATGGTCTGATATATAAAGGATTTTAGAGAAGGT 197605 37 100.0 36 NNNNNNNNNN ..................................... GACAGCGAGAGTCTTCCGGCCGCCCCCGTACGGCCG 197678 37 100.0 33 NNNNNNNNNN ..................................... GCGGGCGAAGAGCAGGCCGACCAGCTCTACAAC 197748 37 100.0 33 NNNNNNNNNN ..................................... CGCCGCAGGGGCAGAAGAAGGAGCATGTACCCA 197818 37 100.0 36 NNNNNNNNNN ..................................... GCCCGTGTCTGGCTCAGGCGGCGGCGCAGCACTTCG 197891 37 100.0 36 NNNNNNNNNN ..................................... GCGGATTTTTCCGCCGACCTGCTGAAACTGAAAAAC 197964 37 100.0 35 NNNNNNNNNN ..................................... CAGACCCGCGCCAGCAGCGCCGCCAGCGCGGCCGC 198036 37 100.0 33 NNNNNNNNNN ..................................... TTCAAGAGTGAGGCGGCTGGCCCAACGAGGCAT 198106 37 100.0 33 NNNNNNNNNN ..................................... TTTGACGTACGGCTTGCCGGTGGGCACCGCCAG 198176 37 100.0 35 NNNNNNNNNN ..................................... CAAGATTGAGAGCGCACGCATAGAAAACCCGTTTA 198248 37 100.0 35 NNNNNNNNNN ..................................... GCTATTCATTCAGCCCGAAGTGAGGTTTGACTCGT 198320 37 100.0 35 NNNNNNNNNN ..................................... ATCACCGGCAGGGCGGGCGGGGCGGCCGCAGAGCG 198392 37 100.0 34 NNNNNNNNNN ..................................... CGGCCCGGAGTGCTGCCACATGCTGATCGCGGAG 198463 37 100.0 36 NNNNNNNNNN ..................................... GTAGGTGAGGGTGTACTCACGCTCGAACACCTTTTT 198536 37 100.0 1 NNNNNNNNNN ..................................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 18 37 35 GTTTCAATCCTCACCCAGCCCGAAGGCCGGGTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-10.50,-15.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [45.0-43.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [73,205] Score: 0.18/0.18 # # Final direction: R [0.37,5.46 Confidence: HIGH] >NC_015170 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================== ====== 5412 21 100.0 37 NNNNNNNNNN ..................... CGGACCGGAAAAGGTCCAAAGAACGCTGCAAGCAATA 5470 21 100.0 67 NNNNNNNNNN ..................... TTTGTGGAACTTTCCATACCCAGCCTTTTCTTCGTCCTATACACATTTTTTTGCCCAATGTCCGATA 5558 21 100.0 36 NNNNNNNNNN ....................G GCGTTTCGATACCGATACCTTTGGGCCGTTTTGATA 5615 21 100.0 47 NNNNNNNNNN ..................... TGGAGGAATGGGGGTTTATGCCGTGCCGGACAAGGTTTTTCCTACGG 5683 21 100.0 44 NNNNNNNNNN AAC..CT.AGA.......... GGCTTCCATTCCCGACACCTTTGGGCCGTTTGACCATTTCTTTC 5748 21 100.0 1 NNNNNNNNNN ..................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================== 6 21 46 CCGACACCTTTGGGCCGTTTT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-1.10,-1.30] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [55.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [117,145] Score: 0/0.18 # # Final direction: F [0.68,0.37 Confidence: LOW] >NC_015172 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1392092 29 100.0 37 AGGAAGGAAG ............................. GAATAGCAAACTTACAGGTATTATTCTCTCGGCCGAC 1392158 29 100.0 37 CTCGGCCGAC ............................. GTCTTTATGTTCACATTACACTGAAGAGTCCGTCTTG 1392224 29 100.0 36 GTCCGTCTTG ............................. GTCAGCATAAATAACTAAATTATCCACGTTATCCTC 1392289 29 100.0 37 CGTTATCCTC ............................. GGCCTCCACATTGTACGCCTCCCCTACCTCCGAGGCC 1392355 29 100.0 39 CTCCGAGGCC ............................. GGAGCCAGCATTGGGCCGCTTGTAATGCCGCCCGTGGCC 1392423 29 100.0 38 GCCCGTGGCC ............................. GATCAACATCCTTGATAGAATCAATGACCAAGAAACTC 1392490 29 100.0 38 CAAGAAACTC ............................. GTTGATTGTCAATGTCGATACGGTATATATCCATACAG 1392557 29 100.0 38 ATCCATACAG ............................. GTTGATTGTCAATGTCGATACGGTATATATCCATACAG 1392624 29 100.0 38 ATCCATACAG ............................. GTTGATTGTCAATGTCGATACGGTATATATCCATACAG 1392691 29 100.0 38 ATCCATACAG ............................. GTGGTTTCAAAGTACGAGAATAATATTCATACTCCCAA 1392758 29 100.0 37 ATACTCCCAA ............................. GGATTTTGATTTCATTATAGCATCGTTCCGTATAAAA 1392824 29 100.0 39 CCGTATAAAA ............................. GGGCCTGTCCCCGGAGATTGAAATTGATGTCGATGACAC 1392892 29 100.0 38 TCGATGACAC ............................. GACTACTACTGAAGAAGCCTTAGCCATCTTTCCGGATT 1392959 29 100.0 39 TTTCCGGATT ............................. GTAAATTATGGCCGCGCCGTCAACCTTGAAATAGTATGA 1393027 29 100.0 35 AATAGTATGA ............................. GTTCGCTGTTATCTATTCGCTTGCCGCGAAAAAGT 1393091 29 100.0 36 GCGAAAAAGT ............................. GCCTGCTGAAGCTTATAGGCCATGATATATGACCAG 1393156 29 100.0 38 ATATGACCAG ............................. TTTTCTAACTCCAACGCCTGCTCATTGCCCTCGGCATC 1393223 29 100.0 37 CCTCGGCATC ............................. TCGATCACATCAAGCACGGACTGACAGGTCTTATACC 1393289 29 100.0 37 GTCTTATACC ............................. TTAAGTTACTTATTGATAGTCAGTCTGAAATGGCAAG 1393355 29 100.0 37 AAATGGCAAG ............................. TAGGTGATCAGCATCAAGGGTGATCAGGCTGCGGGTA 1393421 29 100.0 37 GCTGCGGGTA ............................. CGCAAATGTGAAATACTGTGTCCTTGATATCGACTGG 1393487 29 100.0 37 TATCGACTGG ............................. CGGACGATACCGCTTAAACGAGATAACCCAGACCCAG 1393553 29 96.6 37 CCAGACCCAG ...........G................. CTCCTATGGCTTCCTGTAATTGCCCTTCCAATTCTTT 1393619 29 96.6 37 CCAATTCTTT ...........G................. CTTGATCACGTTGTCTTCAGAGATATTTACAAACTGC 1393685 29 96.6 TACAAACTGC ...........G................. CGCTGCTGGG ========== ====== ====== ====== ========== ============================= 25 29 37 CTTGTAATTTAACCAGAATGGAATGTAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.41%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.00,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [53.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [203,91] Score: 0.18/0.18 # # Final direction: F [0.82,0 Confidence: HIGH] >NC_015172 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 894822 32 100.0 35 NNNNNNNNNN .............A.................. CTGTACTTATGAGAATCTATTGATTATCATCCCAC 894889 32 100.0 34 NNNNNNNNNN .............A.................. CCTCATAGGAATCTAGTTTAAATTCAATAAAATC 894955 32 100.0 33 NNNNNNNNNN .............A.................. TCTATCATTTTTGGCTCAAAAGCATTTCTGAGC 895020 32 100.0 33 NNNNNNNNNN .............A.................. TGAGAAAAAATGATTGTCGGCCTGTCCATCTTT 895085 32 100.0 32 NNNNNNNNNN .............A.................. TCGAAAACCCTTGATTGGTAATATTCGTTAAA 895149 32 100.0 33 NNNNNNNNNN .............A.................. AGCTAATTCGGCTTGTGATAAGTCATTTCCGAT 895214 32 100.0 33 NNNNNNNNNN .............A.................. ACTAATCCCGCCCTCTAAAATCCATAATTCCAA 895279 32 100.0 33 NNNNNNNNNN .............A.................. ATACATTTCGATCTGGAACGATAAAATCACGGC 895344 32 100.0 34 NNNNNNNNNN .............A.................. CAGAAGGGCGTTCGCTATGGCACAGGCCAGGAAA 895410 32 100.0 33 NNNNNNNNNN ................................ AGACCAGGACCCTTCGCGGCCAGGCTTTCTTCA 895475 32 100.0 35 NNNNNNNNNN ................................ AAGAACAGCGCGTCCCAGGAGTACGGAACCGCCAG 895542 32 100.0 32 NNNNNNNNNN ................................ AGGTCCGCTTTGTCGACAGCGAATGGACGGTC 895606 32 100.0 32 NNNNNNNNNN ................................ TGGGTTCCAGGATCACGCCGGTCTGTTTGTTC 895670 32 100.0 33 NNNNNNNNNN ................................ AGGTTGACCTTCCAGAAGCGGTCGGCGTAGGGG 895735 32 100.0 33 NNNNNNNNNN ................................ CAGGGTGTCGATCGCTCTTTTCGTCCTGGCGGT 895800 32 100.0 34 NNNNNNNNNN ................................ CGGCCCCGTTCGTCAGCATGGCCGAAGGCGACGA 895866 32 100.0 34 NNNNNNNNNN ................................ CGGCCTGACCGGAAGAAAGAAGGTGTTAAACATG 895932 32 100.0 34 NNNNNNNNNN ................................ TTCGGCTGGCGAACGGTCCTGAACGAGTACCGGA 895998 32 100.0 33 NNNNNNNNNN ................................ AGCTTGCGTCTTCGCTTCCGCCATTCTGGGCCG 896063 32 100.0 33 NNNNNNNNNN ................................ TTCCTGGCGCTGGCTTTCGCGCCCTTCACAAAA 896128 32 100.0 33 NNNNNNNNNN ................................ ATCGTGTTTCCCCCTTTTGACAGAAAAAAGGTC 896193 32 100.0 34 NNNNNNNNNN ................................ TCAGATATGTTTATCTAATTAGATTTTAGTACTT 896259 32 100.0 33 NNNNNNNNNN ................................ TTACCATATCCCAAACAGGAAGAATTATTTTAT 896324 32 100.0 33 NNNNNNNNNN ................................ AACATTAAAATCCGAATACCCAATATTTATAGC 896389 32 100.0 35 NNNNNNNNNN ................................ CTCATATCTGTTATTGTCATATTATATCGGGCGCC 896456 32 100.0 35 NNNNNNNNNN ................................ AAAATTACATTGACATCGAAGCCGATAACTGGGCA 896523 32 100.0 33 NNNNNNNNNN ................................ TTGAGATTATTGTTTTGTTATGATTATGATTTG 896588 32 100.0 33 NNNNNNNNNN ................................ CCGCTGCTTGGCCTTTTGGCTGTCTAAATCGTC 896653 32 100.0 35 NNNNNNNNNN ................................ ACGTCGAGAGCCAAATCATTCCCGACATCCCCGAC 896720 32 100.0 33 NNNNNNNNNN ................................ TCTTTTACCTCCGGCCATTTGCTTTTAGCCATC 896785 32 100.0 34 NNNNNNNNNN ................................ TAACTAGGATCGCTGAAAATAATTGGCCTGGCGT 896851 32 100.0 34 NNNNNNNNNN ................................ TTCTTTGCTAAGATTTTTTAATTCTGCTGTGTCC 896917 32 100.0 34 NNNNNNNNNN ................................ AATCTTAAATTCCTTAAAGGCCTGCAAGATCATG 896983 32 100.0 33 NNNNNNNNNN ................................ TTCTAGCCATTTTTCTATGCACGGCAAACAGGT 897048 32 100.0 34 NNNNNNNNNN ................................ CTCGGTTTGAATCATTTCAGGACGCGCGGGACAC 897114 32 100.0 33 NNNNNNNNNN ................................ GGGCATTATACTTTAGGCATACCTATTAGGGTT 897179 32 100.0 33 NNNNNNNNNN ................................ CGCATTATGGTCTGGATAATAGCGCGTTACGAA 897244 32 100.0 33 NNNNNNNNNN ................................ ATTTCAAGCCCCGTGTTAAAAAAGCAGTATTGG 897309 32 100.0 33 NNNNNNNNNN ................................ TAGCGAAGTCCATGCTTGACCTTGGCCCCGCGT 897374 32 100.0 33 NNNNNNNNNN ................................ CAGCCGTTCAAAGTAATTATCGTCTACTATAAC 897439 32 100.0 33 NNNNNNNNNN ................................ AGCGTCGGTCTCTGCGATTTTGCTGATGTATTT 897504 32 100.0 33 NNNNNNNNNN ................................ AAAGAACAAAGTTTAAGGAATTATGCACTTTTT 897569 32 100.0 34 NNNNNNNNNN ................................ GAAAAAGCGGGATTGATTGTATACTGCAAAGATG 897635 32 100.0 34 NNNNNNNNNN ................................ TTCTTTTTTCCTCCCCTCCCCCACTCCGTAACAT 897701 32 100.0 34 NNNNNNNNNN ................................ ATAGCTTTCTGCCATGGCTCTGAACCAGTCTCCC 897767 32 100.0 32 NNNNNNNNNN ................................ GAAGTAATCGGTCATCAGAAAAAGTTTGATAG 897831 32 100.0 1 NNNNNNNNNN .........TT..T.....T............ NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 47 32 33 GTCGCACCCCGCAGGGGTGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [6,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.60,-8.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [153,137] Score: 0/0.18 # # Final direction: F [5.55,0.37 Confidence: HIGH] >NC_015174 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 5079465 31 100.0 33 NNNNNNNNNN AC..T..C.T...G................. CAGGAAACCGGCTTTCAGCTCCGCCCAATCGTT 5079529 31 100.0 34 NNNNNNNNNN .....................A......... GCGAGGCGGTGGAGGTCGAGTGGGCTCGCAAGTG 5079594 31 100.0 35 NNNNNNNNNN .....................A......... CCACCATCGGGCGAAGGAATGTTTCAAACGTTTCT 5079660 31 100.0 34 NNNNNNNNNN ............................... TTATGTGCCTGTTCGTACCGGGTGCCACTCCCCG 5079725 31 100.0 34 NNNNNNNNNN ............................... CCAGCCAGTAGAGCAGCCGCTGTTGCACGTCGAT 5079790 31 100.0 33 NNNNNNNNNN ............................... GGTGTTGAATGCCTCGTTGTCGGTCCGGCAGTG 5079854 31 100.0 34 NNNNNNNNNN ............................... GCTGGGCAAATACCTCGGCCGCGTCAAGTTGGCA 5079919 31 100.0 34 NNNNNNNNNN ............................... GAGAACCGTTCCGCGGCAGATTGCAGACTTACCG 5079984 31 100.0 33 NNNNNNNNNN ............................... TCACCGCTATTTCAGCCCTGTTTCCAGGTAGGG 5080048 31 100.0 35 NNNNNNNNNN ............................... TCGGCCTGGCGTCAATCCTGAATTGTAGAAATCTG 5080114 31 100.0 34 NNNNNNNNNN ............................... ACCATGTCGGACCGCTTACTGCAGTTGACGTTGT 5080179 31 100.0 34 NNNNNNNNNN ............................... CGGCTCAACTGTAGTTGTGACTGGGACGCCGGAA 5080244 31 100.0 34 NNNNNNNNNN ............................... GGCAGGCGGCCCGCCACGTTACTAGGTGGCGGAA 5080309 31 100.0 34 NNNNNNNNNN ............................... TCTTCCGGGGTGAGTTTGGTAAACCACGTGCGTG 5080374 31 100.0 34 NNNNNNNNNN ............................... GTTCGCGGGGCGATTTTTCACGACCCAAACGAAG 5080439 31 100.0 34 NNNNNNNNNN ............................... GCTTCACTGCCATCAACTCGCCTCCACGATGTCG 5080504 31 100.0 34 NNNNNNNNNN ............................... TGCCGTTCCGATCACGACGCGATATCGCGCGCCG 5080569 31 100.0 34 NNNNNNNNNN ............................... TTAAGTCACCGTCGAAGAAAACGGAGTCGCTTCG 5080634 31 100.0 34 NNNNNNNNNN ............................... ACAGGTTGCCGGCGGCTACTTTGCACTCGTTGTC 5080699 31 100.0 34 NNNNNNNNNN ............................... TAACCAACCCCGAGCCGGACCCGACCGGTCGGCA 5080764 31 100.0 33 NNNNNNNNNN ............................... TCGATCTGGTCCACAGCGTCGACGTAGCCTACC 5080828 31 100.0 34 NNNNNNNNNN ............................... CCAACTTCCAGCCGCTGAAAACAGCCTTGCTCTG 5080893 31 100.0 34 NNNNNNNNNN ............................... CGTTGTTGCGAGGACGCCACCGGCCGATGCCGAT 5080958 31 100.0 34 NNNNNNNNNN ............................... AAGGACAAAATTCCCCCTCGGCGTCAGTCATCCA 5081023 31 100.0 35 NNNNNNNNNN ............................... GGATCATTGGCGGCAGTTCTCGAGCTCGCTCATGA 5081089 31 100.0 34 NNNNNNNNNN ............................... GCAACTACGTCGCCAGTTCAACCCGTCGGCAATT 5081154 31 100.0 35 NNNNNNNNNN ............................... GGACGCATCAGAACGCGACCGGCCGGAGAGTCGGC 5081220 31 100.0 34 NNNNNNNNNN ............................... TTGACGACGCGAAGCGGTAAAGCCCCTTCTCGCG 5081285 31 100.0 34 NNNNNNNNNN ............................... GGTGGGTTCCTGCTCGTTCCAGATTGCCGTAACA 5081350 31 100.0 34 NNNNNNNNNN ............................... GCTGCACTTTGCATCCGCTTGCCGCGTTCCGTTC 5081415 31 100.0 33 NNNNNNNNNN ............................... ACAGCAGCTATCACGTGCGGAACGCGATGCGTT 5081479 31 100.0 35 NNNNNNNNNN ............................... TCGAACCAGCACCCGGTTTACCCGGAGCGGATTTT 5081545 31 100.0 34 NNNNNNNNNN ............................... CAGGGCCCCTGAGCAGGGTGATACCCATGGATGA 5081610 31 100.0 34 NNNNNNNNNN ............................... TCGACATTCCCGTCTCCTTGCTCAGATACCGCAG 5081675 31 100.0 35 NNNNNNNNNN ............................... CGCCGCGTGCTGCTTTACGGCGTGGACGGGATCGG 5081741 31 100.0 33 NNNNNNNNNN ............................... CAGGGCCAGAACGTCAACCTCCGCCGCGAGATC 5081805 31 100.0 34 NNNNNNNNNN ............................... CAACGACATTCGTGCTTAACGATGGGCTCGGCAC 5081870 31 100.0 35 NNNNNNNNNN ............................... TTGGCAGTGGTGTGTTGTGCAGTGCCTCAAACGCT 5081936 31 100.0 34 NNNNNNNNNN ............................... GAAGCCACGAATCGGCAGCTGCGGCAGGGACACG 5082001 31 100.0 33 NNNNNNNNNN ............................... GAGTGGGACCGAGTGGCGATCGGAAGTTCAGGA 5082065 31 100.0 35 NNNNNNNNNN ............................... GCATCAATCAGGCTGAATTGGCCAAACGTAAGAAT 5082131 31 100.0 34 NNNNNNNNNN ............................... AAGTGCCATTTTCTAATTCCTTTTGCTAAGTCCT 5082196 31 100.0 34 NNNNNNNNNN ............................... TGACCTACCCGAGTTTGTGGTCCATCGCAAAACC 5082261 31 100.0 34 NNNNNNNNNN ............................... GATTGATTTTTTCCGGAAGTCGGGGAGCGTCAAA 5082326 31 100.0 33 NNNNNNNNNN ............................... TTTATCAACGGTCCGAGTGATCGACTTGTCGAA 5082390 31 100.0 34 NNNNNNNNNN ............................... GGATCGCATTGCTCGGGCTGAAAATCGCGTTCCT 5082455 31 100.0 34 NNNNNNNNNN ............................... ACGTCTTCTCGATTCAGTTCCTGGGCGACCTGTC 5082520 31 100.0 35 NNNNNNNNNN ............................... GGGTTCATGGCAGAGGCGATCGAGAAAGAGCAACA 5082586 31 100.0 34 NNNNNNNNNN ............................... AACGTCCGTCAACGAAAAGCAGCTTGTCTGGTTT 5082651 31 100.0 33 NNNNNNNNNN ............................... CAAGGTCAATGGAGCTATGTCCCGACTCAGGCC 5082715 31 100.0 35 NNNNNNNNNN ............................... GTACTTCCCGTTTTCATTTACGTGACTGTCGCCTT 5082781 31 100.0 32 NNNNNNNNNN ............................... TCGTGCTGAGCCGACACAGGCGCGGCAAGAGA 5082844 31 100.0 34 NNNNNNNNNN ............................... ACCCCTATTCATCTTGTCCCACACCAACCAACAG 5082909 31 100.0 34 NNNNNNNNNN ............................... GAATCCACGCAACACGATCGAAGCGGCCCTCTGT 5082974 31 100.0 34 NNNNNNNNNN ............................... TCAGTGAGGTACGGATAGTTCTGGTCGACGTTTT 5083039 31 100.0 34 NNNNNNNNNN ............................... AAATCGACCATTGCAATTCCTTTGCAAACCTAGA 5083104 31 100.0 33 NNNNNNNNNN ............................... AATCCCAGACAGCACATACAGACCAACTAAAGC 5083168 31 100.0 34 NNNNNNNNNN ............................... TGCTGCCACGGGTGGAGAGGCTGGCGACTTGGTG 5083233 31 100.0 33 NNNNNNNNNN ............................... GAAGAAAAGTCGCTCGCGTCGTCATGCTCCACC 5083297 31 100.0 34 NNNNNNNNNN ............................... GCTTCTCGGCATCGGCAGGGATCTCGCCACGTTT 5083362 31 100.0 33 NNNNNNNNNN ............................... GAAAACGACAAGGCGTTCACGGTTTACCATCAG 5083426 31 100.0 33 NNNNNNNNNN ............................... GAGAATGCGTTTGTGAGACGAAACACATGGGGT 5083490 31 100.0 34 NNNNNNNNNN ............................... CACGTCTTGATTGTCAACGAAGCGCACACGTTGC 5083555 31 100.0 34 NNNNNNNNNN ............................... AAGGCCCCGGCGGGTGGATGGATGACGCTCGCGT 5083620 31 100.0 34 NNNNNNNNNN ............................... GCATGAGGTCTTTATTTTTCGCGGCGTGAGCGTG 5083685 31 100.0 33 NNNNNNNNNN ............................... ATGGCGTAAGCGGGGTGCACGGGCAGATTTCGC 5083749 31 100.0 35 NNNNNNNNNN ............................... TTTTTTGAGCAGTTTCGAGGGGGTACCCCTTATGG 5083815 31 100.0 34 NNNNNNNNNN ............................... TTCTTTCACGCGATCGACTGGGGATTCGACTGGA 5083880 31 100.0 33 NNNNNNNNNN ............................... CTTAATGTCCTGGGGAACAACCGTAGCTGATTA 5083944 31 100.0 34 NNNNNNNNNN ............................... AACGATCCTCGTAGACTCCGGCAGCAAGCGTCTA 5084009 31 100.0 35 NNNNNNNNNN ............................... CCGTCAATCTCGGTCATCACCAACACGCGAGAGGT 5084075 31 100.0 34 NNNNNNNNNN ............................... GGTGTCCACTGCGATTGACGAGCTGCCGGACGAT 5084140 31 100.0 35 NNNNNNNNNN ............................... CAGGATACGTTGAAGAGGCTCCAATCCTCTCGCGT 5084206 31 100.0 34 NNNNNNNNNN ............................... CGTTGCTCGACGCCATTCTCGCGGCATTGTGCGG 5084271 31 100.0 34 NNNNNNNNNN ............................... GACGGCTTGTTGCTTTGTGCCGTCGGTGATAGCC 5084336 31 100.0 35 NNNNNNNNNN ............................... GCGGTTCGGCGGCCACGCTCAGCTCCTCATTGACG 5084402 31 100.0 35 NNNNNNNNNN ............................... CAGCAACCCGACAGGACAGGCGGCCATGCCCTTTG 5084468 31 100.0 35 NNNNNNNNNN ............................... CCGTCAATCTCGGTCATCACCAACACGCGAGAGGT 5084534 31 100.0 34 NNNNNNNNNN ............................... GGTGTCCACTGCGATTGACGAGCTGCCGGACGAT 5084599 31 100.0 35 NNNNNNNNNN ............................... CAGGATACGTTGAAGAGGCTCCAATCCTCTCGCGT 5084665 31 100.0 34 NNNNNNNNNN ............................... CGTTGCTCGACGCCATTCTCGCGGCATTGTGCGG 5084730 31 100.0 34 NNNNNNNNNN ............................... GACGGCTTGTTGCTTTGTGCCGTCGGTGATAGCC 5084795 31 100.0 35 NNNNNNNNNN ............................... CAGCAACCCGACAGGACAGGCGGCCATGCCCTTTG 5084861 31 100.0 34 NNNNNNNNNN ............................... AAATCGGGGCCGCATCCATGCAGCCCCTTGGTTT 5084926 31 100.0 34 NNNNNNNNNN ............................... GCAGCAGAGTTTACCCGCTGCACACCCTCGACGC 5084991 31 100.0 34 NNNNNNNNNN ............................... ACGACCATGAGCGGGAAATTCTAGAGCTGAAAAA 5085056 31 100.0 34 NNNNNNNNNN ............................... GTAACCAGATTGGTTTCCCAGCGTTGTTCCTGCT 5085121 31 100.0 33 NNNNNNNNNN ............................... AGAGTCGACTTCGCCAGCCCTCTTGACCACGTT 5085185 31 100.0 35 NNNNNNNNNN ............................... GCGCACGACCTGCCGGCCATTCCTGGCCGTTTCCT 5085251 31 100.0 34 NNNNNNNNNN ............................... GCAAGTTCGTTCCGGTTGACGATATTCGGGACGC 5085316 31 100.0 33 NNNNNNNNNN ............................... CTACTTCGATCAATTGCTGATGCAGTTGCACCG 5085380 31 100.0 34 NNNNNNNNNN ............................... CCAACGGCGGTGGTGACCCTGGCGGCTGTAGTTT 5085445 31 100.0 35 NNNNNNNNNN ............................... TTGCCCAGCCCATCCGAAGACATCGTCGGATGCGT 5085511 31 100.0 34 NNNNNNNNNN ............................... AGAATTTGCGAACTGTGATCGACTGGGTCAACTC 5085576 31 100.0 34 NNNNNNNNNN ............................... GCCCACGTTCACGGCAGATGCGTTGAGGGTTGCT 5085641 31 100.0 35 NNNNNNNNNN ............................... GCCGCAGGTCATCGTCACCATTGCCCAGACGTAGT 5085707 31 100.0 33 NNNNNNNNNN ............................... AATCGGGGCCGCATCCATGCAGCCCCTTGGTTT 5085771 31 100.0 34 NNNNNNNNNN ............................... TCAGCTTCAAACGCCCTTTGGAAGACGGCGGAGT 5085836 31 100.0 35 NNNNNNNNNN ............................... GAGAAAGGGGGTGCGGAATGACTCGGTCTCTCAAT 5085902 31 100.0 34 NNNNNNNNNN ............................... TCGTCTCAATCGGGATTCTGCCGGAACTGTTTCG 5085967 31 100.0 34 NNNNNNNNNN ............................... CTTCGAGCCCGTGCTGATTAAGAAATCGCTGCAC 5086032 31 100.0 35 NNNNNNNNNN ............................... ATCGTTGGTTTGCCGTTGCGATGGTCGACCAACTT 5086098 31 100.0 33 NNNNNNNNNN ............................... CCGGCATTTTCGCCAGAACGAGACGGAATGCCA 5086162 31 100.0 35 NNNNNNNNNN ............................... CGAGCTTGGAATTCTGTTTGTCTTATAACCGGAGG 5086228 31 100.0 34 NNNNNNNNNN ............................... CCGACGGAGGAACCACAGGAGTAGACCCGCCCGA 5086293 31 100.0 34 NNNNNNNNNN ............................... ACGCATGGAAGGCAGTGCAGGATGACGACGAAGA 5086358 31 100.0 34 NNNNNNNNNN ............................... AAATCGACCGATACGAACAACACATCGCGGCGCA 5086423 31 100.0 35 NNNNNNNNNN ............................... CCGGCGAGTCCCCGCTAATGCAGTCAGTCGGATCG 5086489 31 100.0 34 NNNNNNNNNN ............................... GCAGGGAATCGTCTGCCGTCGCGTAGTATTCGAT 5086554 31 100.0 34 NNNNNNNNNN ............................... GATTAACGACGCGAGCATCGTTCAGGAACGTCTG 5086619 31 100.0 33 NNNNNNNNNN ............................... CGCAAAATTCAACTTCGCCGACTGGTAATCAGC 5086683 31 100.0 34 NNNNNNNNNN ............................... CCTGGCCGGTCAGATGGACCTGTCGGACGTCAGT 5086748 31 100.0 35 NNNNNNNNNN ............................... ACGCCCACCGCGAGCGCCGCCCACAAATCCTTGCT 5086814 31 100.0 36 NNNNNNNNNN ............................... GTTCGCTGCTACCACCCAGCCGTCAGACGGCGTCGT 5086881 31 100.0 34 NNNNNNNNNN ............................... GCGCGGTGCCATCTTCTTGGTTGGTGTGACCTGT 5086946 31 100.0 34 NNNNNNNNNN ............................... GTGAGACAGGATCGCAGCCGAGGCTGCAGCACCT 5087011 31 100.0 34 NNNNNNNNNN ............................... ACACTCATCGGATTGAGCCTCGCTGGCCTTTCGT 5087076 31 100.0 35 NNNNNNNNNN ............................... GAAGCCGTCCGAGGTGAGAGGTTGTTTTGATCCGG 5087142 31 100.0 34 NNNNNNNNNN ............................... TCGTGATGTTGACGGGTTTCACGTGGCGATTGAT 5087207 31 100.0 35 NNNNNNNNNN ............................... GATCAACGCGGCTGCATGGTCAGCTGGCGCGGTGT 5087273 31 100.0 36 NNNNNNNNNN ............................... GGTTCACTCGCTCAATATCGCAACGGCGTCGGACCT 5087340 31 100.0 34 NNNNNNNNNN ............................... CAATCGCGATTGCGGGATTTTAGGAGACAGACAT 5087405 31 100.0 33 NNNNNNNNNN ............................... TCTTCGCCTCGCCGGGATCGCCGATGAACTCGG 5087469 31 100.0 34 NNNNNNNNNN ............................... ATCCCTCACGGCCTGCAGAGACTCAGTCTCGTTG 5087534 31 100.0 35 NNNNNNNNNN ............................... TGGACCGGCGAGTCACGCGAGTGGAAACGAAAATT 5087600 31 100.0 34 NNNNNNNNNN ............................... GCACGGCAACCAGGCGGCCAGGTTTTGTCACCCG 5087665 31 100.0 33 NNNNNNNNNN ............................... GGCGGCCAGGTTTTGTCACCCGGAACAACTCCG 5087729 31 100.0 34 NNNNNNNNNN ............................... CTTCGCCGAACAACAGCCGAATAGCGAGGAACTC 5087794 31 100.0 1 NNNNNNNNNN ............................... NNNNNNNNNN ========== ====== ====== ====== ========== =============================== 129 31 34 GTTTCAATCCGCGCCCCTGTGGAGGGGCGAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [4,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.30,-4.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [231,204] Score: 0/0.18 # # Final direction: R [0.37,5.28 Confidence: HIGH] >NC_015174 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 4766876 31 100.0 35 CCGAATCCGA ............................... CATCCTTGGCAACTCCAACGCCAGACGCCGCCTTA 4766942 31 100.0 33 CGCCGCCTTA ............................... GATTGTGACTGCCCCGCGAAAATGGCCGCGTTG 4767006 31 100.0 36 GGCCGCGTTG ............................... GTGCAGGGCCAGAACGTCAACCTCCGCCGCGAGATC 4767073 31 100.0 34 CCGCGAGATC ............................... GCATTCTCTACAGCGAGCAGGATCGCCTTGAGAT 4767138 31 100.0 34 GCCTTGAGAT ............................... GAGCGGTGATTACAACCCGGTTACGGATTCTCAG 4767203 31 100.0 34 GGATTCTCAG ............................... TCGCCATGTTTCTTCTCTCCTTGATTGTTGGCGT 4767268 31 100.0 34 TTGTTGGCGT ............................... AGTGGGGCAAAAACCAATCCTCTCGACTGGAGTC 4767333 31 100.0 34 GACTGGAGTC ............................... AGAACAGCAGCGAGAACAGCAGGAGCCACTTGTT 4767398 31 100.0 34 GCCACTTGTT ............................... CATCGTTGCTGAGCGTTAAGGAGCGATGCGCCGA 4767463 31 100.0 33 GATGCGCCGA ............................... CACACCGGGACCGTGGCACATTCACCGTTGGGC 4767527 31 100.0 34 ACCGTTGGGC ............................... TTCCACGCGACCAGCACACGCTCTACCGGCACCA 4767592 31 100.0 34 ACCGGCACCA ............................... GCGTTACGAGTACGTCAACCGGGTCTTGCTCGCT 4767657 31 100.0 34 CTTGCTCGCT ............................... ACGATCAGGGCAAAACCGTGGGCAAAAAAATCGG 4767722 31 100.0 34 AAAAAATCGG ............................... GCGGACCGATTCCATGTAATCCGGGGTCATCCGG 4767787 31 100.0 35 GGTCATCCGG ............................... TGACGCATCCGGGCAGGTCTGTTGCACCTGGTCGA 4767853 31 100.0 33 ACCTGGTCGA ............................... TTGTGGACCTGCACGCCGTTAACTTCCTTGCCC 4767917 31 100.0 34 TTCCTTGCCC ............................... TTGGCCAAGAAGTTTCCGTGAGATTCCTGTTTCA 4767982 31 100.0 34 TCCTGTTTCA ............................... TCTCGAACGACGAGTTTGAATACGAGTTTGGGAT 4768047 31 100.0 34 AGTTTGGGAT ............................... GCTGCCGATCGTCAGCTTCAATCGCCCTTTGGAA 4768112 31 100.0 33 CCCTTTGGAA ............................... CCGGAGGAAGGATCACAGCGAGAATACATTCCG 4768176 31 100.0 32 ATACATTCCG ............................... ATAATCCGGACGGCCTGTTCGAGATTGGAGAG 4768239 31 100.0 33 GATTGGAGAG ............................... CAACTTCGACACCAGCGGCACCGGTGGCGTTGA 4768303 31 100.0 34 GTGGCGTTGA ............................... ATTTGACCCGATTCGCTATCGGTTCGTCGGCAAA 4768368 31 100.0 34 CGTCGGCAAA ............................... GTGAGGATGTCGACTTTCTTGCCCGTTCGTGTCC 4768433 31 100.0 35 GTTCGTGTCC ............................... GCTCTGCCGTCCTGCCGTGTGTAGTCGGCACCACG 4768499 31 100.0 35 CGGCACCACG ............................... ATGCACTCGGGCAACTGGCAATCGAGTCGGGTCTC 4768565 31 100.0 34 GTCGGGTCTC ............................... AACCCGAACCAGGGATCGAACGCCAGACAAACCG 4768630 31 100.0 34 AGACAAACCG ............................... CGTTCGCGTTCCCATTTCTGTATCTCTTCGCGAG 4768695 31 100.0 33 TCTTCGCGAG ............................... CCAGGACGGCAGCATCTCGCCGTTCGAGGTCGG 4768759 31 100.0 34 TCGAGGTCGG ............................... GGGACGAGGCTTCCTTCTTCCTTGTCGTTGGCGA 4768824 31 100.0 34 TCGTTGGCGA ............................... GCTGATCGGTCATCTTGTAGTAGTTCTTCGCGAT 4768889 31 100.0 35 TCTTCGCGAT ............................... GATGCGTTTTTGTTTGACCTGGCCACGAACGCGGA 4768955 31 100.0 34 CGAACGCGGA ............................... GTCCGGCGTCTCGGGCGTTCTCCAGCGAGTGCAG 4769020 31 100.0 33 GCGAGTGCAG ............................... GGAGTGATTCGGTCGGAATCCCCAGCGAATCGC 4769084 31 100.0 33 AGCGAATCGC ............................... GTCCGAAAGCTGACGGGACATCCGGGGCGAGAA 4769148 31 100.0 34 GGGGCGAGAA ............................... CTGGCGATGTGGCGGTTGACGAGTACAACGGCCA 4769213 31 100.0 34 ACAACGGCCA ............................... TGGGGACGGCTCGAATTTGTGATCGACAATTTCG 4769278 31 100.0 35 GACAATTTCG ............................... AGAGAGGCGGAGAACGCGGCCTGCCGCGAACGGTG 4769344 31 100.0 33 GCGAACGGTG ............................... AAAGGAACGTGATTTTCTACTTCGCGATCGTGG 4769408 31 100.0 35 GCGATCGTGG ............................... CATCTTTTTGCTGGTCTGTATTGAGCACTCGGGCG 4769474 31 100.0 37 CACTCGGGCG ............................... GAGGCAGGGCCATGTCGGCCGTCGCGTAGTATTCGAT 4769542 31 100.0 34 AGTATTCGAT ............................... TGGGCAGCCACCTAGGGATTTTCCCCCATCGCCA 4769607 31 100.0 34 CCCATCGCCA ............................... GGCAGGCTCACGACCTGCCGGCCATCACTTCCCC 4769672 31 100.0 34 TCACTTCCCC ............................... AAGTACAGCAAGCCACTCGATGAAACGATTTCCA 4769737 31 100.0 34 ACGATTTCCA ............................... ACTTCCGTGCACGTGACACGAACCGCCTTTCAAA 4769802 31 100.0 34 GCCTTTCAAA ............................... TATCGGGCAGCAGATGCACTATGTCACTGTCATT 4769867 31 100.0 35 CACTGTCATT ............................... GGTTATACCGCGTACCGTCCGGTCGAGTTCCGGAT 4769933 31 100.0 34 AGTTCCGGAT ............................... TCGTCCTTGTTGCTTGGCTCAAAGGTAATTGAGT 4769998 31 100.0 33 GTAATTGAGT ............................... GTCGAGCCGGTCAGCGTGACTGATTTGATGGCA 4770062 31 100.0 35 TTTGATGGCA ............................... ATGAACGCGGTATGGAACCGCGAGCAGGAAGGATC 4770128 31 100.0 34 AGGAAGGATC ............................... GAACGACATCGTCGGGCCGTCGAGCCGGTTCGCT 4770193 31 100.0 35 CCGGTTCGCT ............................... AGAAGCTCAATCTACCGCTGACGAACGACGTGCGT 4770259 31 100.0 34 CGACGTGCGT ............................... ATCATGATGAAGCGGTTCACGTCGGGATCTTTCT 4770324 31 100.0 35 GGATCTTTCT ............................... AGACCACGCCCGACATGGAGGATGACAGATTACCG 4770390 31 100.0 33 CAGATTACCG ............................... CACGCTGAACAGGATGTTCGGCCCGCTCAAATG 4770454 31 100.0 33 CGCTCAAATG ............................... CTTTCTGTGCTCGATCGGCGTTCGCAAAGCATT 4770518 31 100.0 34 GCAAAGCATT ............................... CGAGGTCGGGCCAGTTTTCGCTCCCGGTCTGCGT 4770583 31 100.0 34 CGGTCTGCGT ............................... GACCTACACCCACCGAGATGCACAGGTGGAGCGG 4770648 31 100.0 33 GGTGGAGCGG ............................... ATTTTCGACAAAGCCCTGTCAGCCGACGAAGCG 4770712 31 100.0 34 CGACGAAGCG ............................... GGCCGCCCTGGGCACCCTTCCTGCTGCCACTTCT 4770777 31 100.0 33 TGCCACTTCT ............................... ACGTATCCCAAGACGGGAACGCTAGCGTCTCTT 4770841 31 100.0 35 AGCGTCTCTT ............................... GTTCTCACAGATACATTCAGGCATGATCAGTCCGG 4770907 31 100.0 33 ATCAGTCCGG ............................... ATCGAAGCTCGGAACCAACCTTGCCCACGGGAT 4770971 31 100.0 33 CCCACGGGAT ............................... ATGACGTGGCCCCGATGTGCTGTGACAGGCTCG 4771035 31 100.0 33 GACAGGCTCG ............................... GACGGTCTTCTTGCTGAGGTTGTGGTTTGGGAC 4771099 31 100.0 35 GGTTTGGGAC ............................... ATCCCGCCGAACAGGCCGCGAACATCGCCGCTGAA 4771165 31 100.0 34 CGCCGCTGAA ............................... CCAGGGACAACCGGGCATCTGTCGCCGCGTTGAC 4771230 31 100.0 34 CCGCGTTGAC ............................... AAAACTGCTCTCGCAGCAGTTGACCCGCAACCTG 4771295 31 100.0 34 CCGCAACCTG ............................... GTCGGACGTGCCTTGTGATGCCGATCGCTGGATT 4771360 31 100.0 33 TCGCTGGATT ............................... CGGTTCCACAGGTTCCGGTAGATCGTTAGAGCT 4771424 31 100.0 34 CGTTAGAGCT ............................... GGGTGATTCGTGGGGGTGGTGTGCTGCCTGAATT 4771489 31 100.0 33 TGCCTGAATT ............................... CTTCACCCATGCCATCGCCCGAACTCCTTTCGA 4771553 31 100.0 35 CTCCTTTCGA ............................... CTTCGTGTCCGACAGGGCATTCAACACAACACCCA 4771619 31 100.0 33 ACAACACCCA ............................... AAACAAGTCGTGGGAAAGCTCCCTGCGGATCGA 4771683 31 100.0 34 TGCGGATCGA ............................... AGACGTTCCGTCCGGCAAGCGTCCGCCAAACGAA 4771748 31 100.0 34 GCCAAACGAA ............................... GAGCCGCTTCATGGATTCGGTTTTGGGCGACGTT 4771813 31 100.0 34 GGGCGACGTT ............................... GGTAAATCCGCATCTTCTTTCGTGGAGGCTTGAT 4771878 31 100.0 34 GAGGCTTGAT ............................... GCCCAGGCAAGGTTCAATGTTTGGCAGATTGCTG 4771943 31 100.0 34 CAGATTGCTG ............................... GTCCATCGCAAAACCGAACGCACATCCGTCGCCA 4772008 31 100.0 35 TCCGTCGCCA ............................... CTGTCAGCCTGCCAACGTCTCTGCCGTGCGGCATT 4772074 31 100.0 34 GTGCGGCATT ............................... AAGGTTGCCATGCACCACCTGATTTTCATTCCCG 4772139 31 100.0 34 TTCATTCCCG ............................... TCGCTCAGCTCGCTCAGTTCGAACCCCTTGGCCT 4772204 31 100.0 33 CCCTTGGCCT ............................... GCCCGTCGCCTTGACCTTCTTCTCAAGTTCCCG 4772268 31 100.0 35 CAAGTTCCCG ............................... CCTAAGACGCTGAGAGCCATCTCCAGGATCTCGCT 4772334 31 100.0 35 GGATCTCGCT ............................... ATTGGTGGCGGATGCGGGGAGTGCTGAATAAGCAA 4772400 31 100.0 33 GAATAAGCAA ............................... CGAGACACGCAGGCGACAATCTACGCGGGGTTC 4772464 31 100.0 CGCGGGGTTC ............................... GGCGTTGGCG ========== ====== ====== ====== ========== =============================== 87 31 33 GTTTCAATCCGCGCCCCTGTGGAGGGGCGAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [4,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.30,-4.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1296,204] Score: 0.18/0.18 # # Final direction: R [0.55,4.87 Confidence: HIGH] >NC_015185 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 267992 30 100.0 35 GGATTTCTTG .............................. GTATTCCTACTACCTAAGACCACAAAACATTCAGC 268057 30 100.0 36 AACATTCAGC .............................. ATCGTTAATGCTGGTGTTGGCGTTGGAACTAAAGAA 268123 30 96.7 36 AACTAAAGAA .............................C GCATTTTTAAAACAAGCTCAATTGCTCTTGTATTAC 268189 30 100.0 35 CTTGTATTAC .............................. ACTTGAAAAGAGCAGCATTAGTTGTATCTGTTGCT 268254 30 100.0 37 ATCTGTTGCT .............................. CCTCGCAGGTAAAGAGCGTATCTCTTCGGATTCTTGT 268321 30 100.0 GGATTCTTGT .............................. TAAATGTTTG ========== ====== ====== ====== ========== ============================== 6 30 35 GTTTTATCTGAACGTAGTGGGATATAAAGT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [104,69] Score: 0/0.18 # # Final direction: NA [0,0 Confidence: NA] >NC_015215 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1515726 36 100.0 46 NNNNNNNNNN .....................A.............. TGCTTCTTAGCGGTGTTATTTTAATGGCAGGTTTTGGAACCATTCG 1515808 36 100.0 30 NNNNNNNNNN .................................... TTGACAAGGAAAGTGGCGTATCCCAATCTG 1515874 36 100.0 30 NNNNNNNNNN .................................... AGGTGGTGGAACAGTTGGAGTAGTTCCTGC 1515940 36 100.0 30 NNNNNNNNNN .................................... AGATTTAGCAGGCTATTCAGCTATTGAAAG 1516006 36 100.0 30 NNNNNNNNNN .................................... AGAACCAAAAACGTTTTCAACCGTTGGCTC 1516072 36 100.0 30 NNNNNNNNNN .................................... GTTGGCTTTGATTGGTCTGATAACGGTATT 1516138 36 100.0 30 NNNNNNNNNN .................................... GTGAATTGTTCAATCATTGATGTTATATAA 1516204 36 100.0 30 NNNNNNNNNN .................................... ACTGCTTTACGTTGAAGAGCTTCTTCCATA 1516270 36 100.0 30 NNNNNNNNNN .................................... TATTAGATGTTTGTGATGTCTTTGATGAAT 1516336 36 100.0 30 NNNNNNNNNN .................................... TAATCTTTATGGTAGAACAGTTCCAACGTT 1516402 36 100.0 30 NNNNNNNNNN .................................... ACGGGAATTGGCTAATTATTAAAAATATAA 1516468 36 100.0 30 NNNNNNNNNN .................................... CCTATGATATGCCCATTGTTATCCATTTTG 1516534 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 13 36 31 GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-5.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [170,86] Score: 0/0.18 # # Final direction: R [0.27,0.78 Confidence: MEDIUM] >NC_015215 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1517213 36 100.0 30 NNNNNNNNNN .................................... ACAAAGTCGTTGACTACGACGATAAAATTA 1517279 36 100.0 30 NNNNNNNNNN .................................... ACATATTACGATTATTTGTCTAACTTTAAT 1517345 36 100.0 30 NNNNNNNNNN .................................... TTACTTCTCAGCTGTTATTGAAGAAGATAC 1517411 36 100.0 30 NNNNNNNNNN .................................... GAGTCCGTTGTTGCAGGTCTGAATACTTCG 1517477 36 100.0 30 NNNNNNNNNN .................................... TCAAGTTCCGACACAGTCGAAGATGAACCT 1517543 36 100.0 30 NNNNNNNNNN .................................... TATTCGAGAGTGTCAACAATTTTGTCTATA 1517609 36 100.0 30 NNNNNNNNNN .................................... AATATAAAGATTTACCATTTTAAAAGGAGG 1517675 36 100.0 30 NNNNNNNNNN .................................... AGAACCATTGTTCCTTGTGTAGTTTGTCCT 1517741 36 100.0 30 NNNNNNNNNN .................................... TAATATTCGAATACTCCGATATCACCATCT 1517807 36 100.0 30 NNNNNNNNNN .................................... GCATTGAATTACCATAAGGAAAAGCAGCGC 1517873 36 100.0 30 NNNNNNNNNN .................................... TTATAGATGTCTTGTGTAATTTGGTACACA 1517939 36 100.0 30 NNNNNNNNNN .................................... AACAACGGAAGTAACTTTAATCATTGATGT 1518005 36 100.0 30 NNNNNNNNNN .................................... AGTTCACCATACGCAATGACTTTGATGTAG 1518071 36 100.0 30 NNNNNNNNNN .................................... AGTTCGTTGTATAATGTGTATGTTAGTCTG 1518137 36 100.0 29 NNNNNNNNNN .................................... GATAAGCGACATGGTATTGACTTTTCATC 1518202 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 16 36 29 GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-5.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [144,134] Score: 0/0.18 # # Final direction: R [0.27,0.37 Confidence: LOW] >NC_015222 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 2937667 35 100.0 30 TTATTTCCAG ................................... GAACTTTAAAACATTTGTGATAAAATTTTG 2937732 35 100.0 30 TAAAATTTTG ................................... TCCATCTGTTTGCGGTACTCGTAGGCTATA 2937797 35 100.0 31 GTAGGCTATA ................................... TGATTATGTCTACCATGCTGTCTTCGTGCGC 2937863 35 100.0 31 CTTCGTGCGC ................................... TGAATCCATTGAGCTTGGTGAACATACATAC 2937929 35 100.0 31 ACATACATAC ................................... TTCATTGCAAGCAGAGTTTACGCCAATAGGA 2937995 35 100.0 31 GCCAATAGGA ................................... TGCCCTTCACCTCATTAGAAAATACGTCAGG 2938061 35 100.0 30 ATACGTCAGG ................................... CTAATGAATTGATATCCGCATTAGAGCGCA 2938126 35 100.0 30 TTAGAGCGCA ................................... GATAGCGACACTGCGAAGATAGCAGCAGCA 2938191 35 100.0 30 AGCAGCAGCA ................................... TTTCAGGTTATGCGGATGCGCATGACGTAT 2938256 35 100.0 30 CATGACGTAT ................................... TTGTGCTTGAGTTGTTAGATTCTACAAACT 2938321 35 100.0 30 TCTACAAACT ................................... TTTTGAGTTCAAGACAATGCTGGTATGTGC 2938386 35 100.0 30 TGGTATGTGC ................................... CGAAACTTCACCGTTAAATGCTCTGCCAAA 2938451 35 100.0 30 CTCTGCCAAA ................................... TAAGTTTAGACTTGAAGAAACCGTGTTAGT 2938516 35 100.0 30 CCGTGTTAGT ................................... GTCAAGATGTACCGATGAGTCGCTACCTGA 2938581 35 100.0 30 CGCTACCTGA ................................... TTGAATCCATCGGTACTTTACACTCAATAT 2938646 35 100.0 30 CACTCAATAT ................................... GAAATAATCAAAGACGATATCGGTCTTGTA 2938711 35 100.0 30 CGGTCTTGTA ................................... AGCCGACTTGGATTTGATGCGGAAATCTCA 2938776 35 100.0 30 GGAAATCTCA ................................... ATCCGACTGGATGAAAACGTCGCCTTTTTT 2938841 35 100.0 30 CGCCTTTTTT ................................... GTTTCAACAATTTACCAATACATTACAAGT 2938906 35 100.0 CATTACAAGT ................................... CGCTGTACAT ========== ====== ====== ====== ========== =================================== 20 35 30 GTTCCGGTCAGAGCACAAATCCCAATATGCTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.29%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-4.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [419,71] Score: 0.18/0.18 # # Final direction: R [0.18,0.37 Confidence: MEDIUM] >NC_015222 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1386182 32 100.0 33 AATAACGGGT ................................ ACTGCCAAATAAAACATTATACAAGTAAACAAC 1386247 32 100.0 33 AGTAAACAAC ................................ CCGCTGGTTCCGTTATCGCTTGCGCTTCCTGTA 1386312 32 100.0 33 GCTTCCTGTA ................................ CTCGCCTGGTACTGAGATAATACCAGGCGCGTG 1386377 32 100.0 33 CAGGCGCGTG ................................ TGCTAATATTTCTTTATGTTCGGATATCTTATC 1386442 32 100.0 33 ATATCTTATC ................................ TTTAAAATTCCCTTATAACATTTCATTATAAGG 1386507 32 100.0 35 CATTATAAGG ................................ TTATACAAGTGAACAATGAGACGCCATAATAAATT 1386574 32 100.0 34 ATAATAAATT ................................ AATTAATTACGCTTGCTTCATCGATAAGTCTATC 1386640 32 100.0 32 TAAGTCTATC ................................ CCCCCGGATACCGCAGCTGCATTCATTTGGCT 1386704 32 100.0 35 TCATTTGGCT ................................ GACCGGATACTTGTCTTCTGCTGCACAAAGTTCCT 1386771 32 100.0 33 CAAAGTTCCT ................................ TTTCAAACAAAAATTATTTCCAACTCTTTTCTT 1386836 32 100.0 33 CTCTTTTCTT ................................ CGACCTGATAAATACATGTTGCAAACTATGCCG 1386901 32 100.0 32 AACTATGCCG ................................ AAAACATTCTAGGATATCGCGCCGCCAGCAAG 1386965 32 100.0 35 CGCCAGCAAG ................................ TTAAGTCTATCGGATAGTCATGGGGTAACCATGCG 1387032 32 100.0 33 TAACCATGCG ................................ ATGGCAACAATGGCCGGTATGATAGCCAGTTTT 1387097 32 100.0 33 AGCCAGTTTT ................................ GTCAAGGTTATTGTTGAGGATTACAAGCCAAGA 1387162 32 100.0 35 CAAGCCAAGA ................................ CGGGTCGATTCAAATCCACCGGCTTTTTGCTTTGC 1387229 32 100.0 33 TTTGCTTTGC ................................ GGTGGATTTGATTCATAACTATGAGGATTATAT 1387294 32 100.0 33 AGGATTATAT ................................ GCGGGAATAAAATCATGCCCATCGCTTCGGAAC 1387359 32 100.0 34 GCTTCGGAAC ................................ CCCGCACCATGCCACCCACGCAGCGTTAAGCCGA 1387425 32 100.0 32 GTTAAGCCGA ................................ CTTTGGCGGTTCCGGTACAGGAGCGTATAACC 1387489 32 100.0 33 GCGTATAACC ................................ CGCCTTTCATTTTGCTTCCTCGTATTTCAAGAG 1387554 32 100.0 34 ATTTCAAGAG ................................ AGAGCCGAGTATATCTTTACCGGAACGGGTGCGG 1387620 32 100.0 32 ACGGGTGCGG ................................ CTATTGGTTATCTTGTTTTCACGTTCAGGTGG 1387684 32 100.0 32 GTTCAGGTGG ................................ GTCCAGCGTGGATATCGCGGTTTTGTTTTAGT 1387748 32 100.0 34 TTGTTTTAGT ................................ CCGTACCATGTCGAAAGCTTCAAACCCATTTCCC 1387814 32 100.0 34 CCCATTTCCC ................................ AGATTATGGACGGTACGGCGCGCGATTTGGGATT 1387880 32 100.0 33 ATTTGGGATT ................................ GTAAATAATAAATCTGTTTTCAGATTCCGAAAT 1387945 32 100.0 33 ATTCCGAAAT ................................ TCAAGCAGACAATAGCCAAAGCCGGTGTAACTG 1388010 32 100.0 33 GGTGTAACTG ................................ ATCGCCGTCTGTACTCCGGTTTCTAAGTGTGTA 1388075 32 100.0 33 TAAGTGTGTA ................................ TTGCTTGACATCGCCCGTGACCAGATCAAGAAC 1388140 32 100.0 33 GATCAAGAAC ................................ GTGAAATCGAGGTTCGACTTAATTCCGGTGGAG 1388205 32 100.0 33 TCCGGTGGAG ................................ AATAGGATTTTCACTTGCCGTATCATAGTACCA 1388270 32 100.0 34 CATAGTACCA ................................ CAGCATCGCCTTTAAACCCCGGTGAACTTGCTAG 1388336 32 100.0 AACTTGCTAG ................................ AGCGTATGCT ========== ====== ====== ====== ========== ================================ 34 32 33 GTTTCAATCCACGCGCCCACGCGGGGCGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.30,-7.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [410,176] Score: 0.18/0.18 # # Final direction: R [0.92,4.77 Confidence: HIGH] >NC_015259 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3059917 29 100.0 32 NNNNNNNNNN ............................. ACCTTGAAGGTCGAAAGGCCCTGGACGAACGA 3059978 29 100.0 32 NNNNNNNNNN ............................. GCTACCCGCATACATGCCGCAACTCTTCAAGC 3060039 29 100.0 32 NNNNNNNNNN ............................. GATCACTGGTTCCCGCTTTCCAGTTTAACAGA 3060100 29 100.0 32 NNNNNNNNNN ............................. TGGACTCAATCCCGGATCCACGCTCCGCCGTG 3060161 29 100.0 32 NNNNNNNNNN ............................. TTAAGGGACGTCGGCGCGGTCTCATCACAGTC 3060222 29 100.0 32 NNNNNNNNNN ............................. ACGGACGTGTCGCGGAGGCCAGGGCAAAAGCT 3060283 29 100.0 32 NNNNNNNNNN ............................. TTCCGCCCCGCCTGCCTCGACCCTCGCGGCAT 3060344 29 100.0 32 NNNNNNNNNN ............................. GGGATCATGGCCGTTGCCCTTGATGGTAATAC 3060405 29 100.0 32 NNNNNNNNNN ............................. TCGATCACCAAGGGGTCGCTGGTCGCGTGCGC 3060466 29 100.0 32 NNNNNNNNNN ............................. TTTGCGCGTAGCTATTTGGTACTTGCCCTTTT 3060527 29 100.0 32 NNNNNNNNNN ............................. CCGCGCCCGAGGCAACGCCCCAATCGCCCCCG 3060588 29 100.0 32 NNNNNNNNNN ............................. GGCCGGCGACGGGATTGAAGCCAGGTGGGGAG 3060649 29 100.0 32 NNNNNNNNNN ............................. TCGATAGACGCATGGGACAAACTGGACGACAG 3060710 29 100.0 32 NNNNNNNNNN ............................. GGTCGCGGCACGTGATACCTGCCGAACGGACG 3060771 29 100.0 32 NNNNNNNNNN ............................. CTTGCCGGCGCCAGGCTTATCGGCGCCAACCT 3060832 29 100.0 32 NNNNNNNNNN ............................. GATTTGCTGTATGCCAGCTTGTATAGATCCGG 3060893 29 100.0 32 NNNNNNNNNN ............................. GAGGACGACGGGGTATTTGACCCGGTCGAGTA 3060954 29 100.0 32 NNNNNNNNNN ............................. GGGCCAAGCCGGAAGTAAGGGAAATCAGAGCC 3061015 29 100.0 32 NNNNNNNNNN ............................. GAGTTGAATAATGCACCGATCCAAGTGCACGG 3061076 29 100.0 32 NNNNNNNNNN ............................. AAGCCCGGCGGCTCCATCGCCGGGCTTTCGCC 3061137 29 100.0 33 NNNNNNNNNN ............................. CTTTTACCGGCTCGATTTCGACGCGGACGTTTA 3061199 29 100.0 32 NNNNNNNNNN ............................. CATTGCTCTCGACCTCGCTTATCGCTTCAAGG 3061260 29 100.0 41 NNNNNNNNNN ............................. GATTTCCACCGTTCCCGCCTCGATCGCGACGATCGCCCGGA 3061330 29 100.0 32 NNNNNNNNNN ............................. CTTCCGGCCGGGCCTCACCTTGCCCTGCGCGG 3061391 29 100.0 32 NNNNNNNNNN ............................. TTCACGCGTGCCGATATGACCGGTTCCGCTCT 3061452 29 100.0 32 NNNNNNNNNN ............................T TTTTGACAGCGAGGAGACTACTATCATGACAC 3061513 29 100.0 32 NNNNNNNNNN ............................. GCAAGTGACTGATCGACTTGAGCCTTATCAGA 3061574 29 100.0 32 NNNNNNNNNN ............................. GTCATAGATTGCGCGCCCCTCTTTGCGTCATG 3061635 29 100.0 32 NNNNNNNNNN ............................. GCTTTCATTATCATCGTCGACGCAGCTCATGA 3061696 29 100.0 32 NNNNNNNNNN ............................G TGTTTGTAGGAGGGGGCGGCCCGCACGCTTAC 3061757 29 100.0 1 NNNNNNNNNN .............G............TG. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 31 29 32 GTCTCCCCCGCCTACGCGGGGATGAACCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [4,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-12.20,-13.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [51.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [50,121] Score: 0.18/0.18 # # Final direction: F [0.68,0.55 Confidence: LOW] >NC_015276 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================================== ====== 1731633 53 96.2 58 AAACGGAAAA -....A............................................... GTTCGACTCTTGGTGTCGGCACCATTTCTTGGTAAATACAATTTGTTTTAGTTCTTTA 1731744 53 100.0 72 TAGTTCTTTA ..................................................... GTTCGACTCTTGGTGCCGGCACCATCTCTAAGCGAGTTTCTCGCCGAGTTTGTAAAAGAAATAAAGCATGTT 1731869 53 100.0 43 AAAGCATGTT ..................................................... GTTCGACTCTTGGTGCCGGCACCATTACATCGCAAAACATATC 1731965 53 100.0 AAAACATATC ..................................................... ========== ====== ====== ====== ========== ===================================================== 4 53 57 TGCCGGTATAGCTCAGTTGGTAGAGCATCTGACTTGTAATCAGAGGGTCCCGA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [12,14] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [372,2289] Score: 0.18/0.18 # # Final direction: R [0,1.33 Confidence: HIGH] >NC_015276 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3643810 28 100.0 31 NNNNNNNNNN ................G........... GCGAGGCTTAGGCATAAAAAACCGCTGATGC 3643869 28 100.0 33 NNNNNNNNNN ........................A... ATAAAAGCAGAGTACGAAAACGCCAGAAGTCGA 3643930 28 100.0 31 NNNNNNNNNN ................G........... GGGCAGATTACTGCATACATCGAACAGCTTC 3643989 28 100.0 32 NNNNNNNNNN .............C.............. AAGTTTTTTCAGAGTGTTGAATGCTGTTTGCT 3644049 28 100.0 32 NNNNNNNNNN ......................A..... CCGCTCAAGCGGAATCTGAACACCACAATCTA 3644109 28 100.0 32 NNNNNNNNNN ............................ CTCTCGCTTGCGAGGCGGCGGGAGCATGGCGC 3644169 28 100.0 32 NNNNNNNNNN ................G........... AGATAGGGCATAGATAATTTCGGCCATCTGGT 3644229 28 100.0 32 NNNNNNNNNN ............................ CCGTTACAAACACGGATTACGGCGCGATTGAG 3644289 28 100.0 32 NNNNNNNNNN ............................ TGGTTCACCATCCCCTACTTCACCTTCAAAAT 3644349 28 100.0 32 NNNNNNNNNN ............................ TTCCCCTGTCAAAACACAAACAACGTTCACAA 3644409 28 100.0 33 NNNNNNNNNN ............................ CGCCCATATTGCCTTGTCTGCGTTTTTTCTAAG 3644470 28 100.0 33 NNNNNNNNNN ............................ ATAGTTTCCGTTTATGTTCACTCCCTTCGGCAA 3644531 28 100.0 32 NNNNNNNNNN ............................ ATAGGCTGAATCTGTTCTAGTAATTGTGCGGA 3644591 28 100.0 32 NNNNNNNNNN ............................ TTCAACCCATTTACCTCATAGCGAGCGTTACG 3644651 28 100.0 32 NNNNNNNNNN ............................ TTTAAAGGAGCTTTACTAGCCCCTCTTATAAA 3644711 28 100.0 32 NNNNNNNNNN ............................ GTCTTCACCTAGTTGAGTTACCTTATCTTCTA 3644771 28 100.0 32 NNNNNNNNNN ............................ ATGCTAGCTCACTTTCCTTATGTAGACACATA 3644831 28 100.0 32 NNNNNNNNNN ............................ GTGTTGTTACTCTTTAAACCGCTTATCATTAA 3644891 28 100.0 32 NNNNNNNNNN ............................ CTCGCCTTTAAGAGCGTTAACGCCTTCAACTA 3644951 28 100.0 32 NNNNNNNNNN ............................ TCGTGCACACGAGCATACTGGAATATCTCAGA 3645011 28 100.0 32 NNNNNNNNNN ............................ TAAAAGTTTGGACTGTAACTTGCCCACATTGT 3645071 28 100.0 32 NNNNNNNNNN ............................ AGAGTTTTTGAACTTTAACGGCTCTACGTTAT 3645131 28 100.0 32 NNNNNNNNNN ............................ TACATCCCCACCCCCGGGATACATGCTTGTTA 3645191 28 100.0 32 NNNNNNNNNN ............................ TCTACCATAACAAAATCCTCTTATATCGTTAT 3645251 28 100.0 32 NNNNNNNNNN ............................ GAAGATATAAGGGCAAGCTTTGGTAGTGTTGC 3645311 28 100.0 32 NNNNNNNNNN ............................ TGGCGCGTCTTAACGCTACGACTAACGCGTCG 3645371 28 100.0 32 NNNNNNNNNN ............................ AAGAGCTAGAGCAGAGAATCGAGGGAGTGGGT 3645431 28 100.0 32 NNNNNNNNNN ............................ CAAGGGGAACAAATGAATCAAACGATTAACAA 3645491 28 100.0 32 NNNNNNNNNN ............................ ATACGAGGTGGAGGGCGCAACGATCCCGACAA 3645551 28 100.0 32 NNNNNNNNNN ............................ TGGATTTGCTTGCTCAAGTGGCGGGGCTTGGC 3645611 28 100.0 32 NNNNNNNNNN ............................ AATTTATTACCTTTTTTAGCGTTTACCTCTTC 3645671 28 100.0 32 NNNNNNNNNN ........T................... TCAGAAGACAACGTGTACACGCTGTATAAGGA 3645731 28 100.0 32 NNNNNNNNNN ............................ AACAGTGGAAACAGGAACCCCAATGGCTCTAA 3645791 28 100.0 32 NNNNNNNNNN ............................ CTCTTGCTTGCTATTTTTCATAGTCTCGCTAA 3645851 28 100.0 32 NNNNNNNNNN ............................ AGGGACTTGCGTTATTTGGGATTTGGAATGAA 3645911 28 100.0 32 NNNNNNNNNN ............................ TGGGTGGGGGTGTAAAGAACCTTTATGCCAAA 3645971 28 100.0 32 NNNNNNNNNN ............................ TGGGTGGGGGTGTAAAGAACCTTTATGCCAAA 3646031 28 100.0 32 NNNNNNNNNN ............................ AAGAGCGTGCGATATGTTTAAGAATCGGGTCA 3646091 28 100.0 32 NNNNNNNNNN ............................ CCCAGCAAAAACGCTTCATTCGCTTTTTGTTG 3646151 28 100.0 32 NNNNNNNNNN ............................ CAAACATACACTTATGAACCAGATGATGATGA 3646211 28 100.0 32 NNNNNNNNNN ............................ ATTTTGGCCTGTATTGCTGTTTCAATGTCGGG 3646271 28 100.0 32 NNNNNNNNNN ............................ TCACTGCGTTAATGTAAACCCTTGCATCTTCT 3646331 28 100.0 32 NNNNNNNNNN ............................ ATTCATATGATACCTAGAGTTGACAGAGTGGA 3646391 28 100.0 32 NNNNNNNNNN ............................ GGTTACCTCCCAGAGGCACAGTTTACGACATT 3646451 28 100.0 32 NNNNNNNNNN ............................ CCTCTCTTAACTCATTACAAACATCTTGTGAA 3646511 28 100.0 32 NNNNNNNNNN ............................ CTCCTCTATCATATCCGCTAGAGCATCTTATA 3646571 28 100.0 32 NNNNNNNNNN ............................ GACAATTTATCTATAAAAGAGATTGACAAGAA 3646631 28 100.0 32 NNNNNNNNNN ............................ TAAGACACCCCTTCGGATAGTTGCGGCATAGC 3646691 28 100.0 32 NNNNNNNNNN ............................ ACACTAGGGAAAAAGTAGAAGCACATTATTTA 3646751 28 100.0 32 NNNNNNNNNN ............................ ATTAGCAGAATCGAAGCACATCCCGTACATTA 3646811 28 100.0 32 NNNNNNNNNN ............................ CGTACTAAGCGTATGCTAAGAAACAACTTAAA 3646871 28 100.0 32 NNNNNNNNNN ............................ TTATGCTTTGCTGTGAATGGATTCATGGATGC 3646931 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 53 28 32 TTTCTAAGCTGCGTGTACGGCAGCGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.40,-3.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [247,131] Score: 0/0.18 # # Final direction: R [0.37,1.05 Confidence: MEDIUM] >NC_015276 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 694195 35 100.0 36 NNNNNNNNNN ...................T............... TGACAATAAATAGGAGGATGTCTATGAAGACTACTT 694266 35 100.0 38 NNNNNNNNNN ................................... AAAAACCATGCTTAACAGCTCTCAGCAAAAGCGCCTAA 694339 35 100.0 35 NNNNNNNNNN ................................... ATAGGCCGTTTAATGTCACAACATCTAATAAATTC 694409 35 100.0 34 NNNNNNNNNN ................................... AGAAGCTAAGGCTAAGACGGCTGAGACTAAGAAT 694478 35 100.0 35 NNNNNNNNNN ................................... TGAAGACCCAGAAAAAAAACTCAAGCGGTTAATAG 694548 35 100.0 37 NNNNNNNNNN ................................... TTTACAATGAATGGGATACTCCACTAAATGGAACAAT 694620 35 100.0 34 NNNNNNNNNN ................................... TACGAAGATTTCGAGATTCAAACGGGCAACACAA 694689 35 100.0 35 NNNNNNNNNN ................................... ATGACAAGTTCGATAAATTTCTAGAAGATAGCACG 694759 35 100.0 24 NNNNNNNNNN ............AGC.G.T.TGAAACC.AAC.C.. TAGAAGATATCAAGAAGCTAGAGA 694818 35 100.0 34 NNNNNNNNNN ................................... TTATGAAAACTATTACTTCTGCTACTAGCAGAAG 694887 35 100.0 35 NNNNNNNNNN ................................... CGCAGTTGGCCTAGACTTCGGTCTTGCACTCAAAA 694957 35 100.0 37 NNNNNNNNNN ................................... TTCAACAATAAGGAAGGTGATCTACGACAACACGGCG 695029 35 100.0 34 NNNNNNNNNN ................................... CCCAACACCAAACGCGCTACAATTAGCTCTATGT 695098 35 100.0 38 NNNNNNNNNN ................................... CAGCTGCAAAAATTAAAGCCTCATGAGCACAGAGAAAT 695171 35 100.0 38 NNNNNNNNNN ................................... CAGCTGCAAAAATTAAAGCCTCATGAGCACAGAGAAAT 695244 35 100.0 36 NNNNNNNNNN ................................... TTCTCTATTCCAGATCACATCCGTCTGCTCATGGTA 695315 35 100.0 35 NNNNNNNNNN ................................... CAAAAACATTATTAATTAATGACATCTGCGAAAAA 695385 35 100.0 36 NNNNNNNNNN ................................... TTTAAGTGGAAATGTGGCCGAATATCTCGGTATTTT 695456 35 100.0 34 NNNNNNNNNN ................................... AAAGAAATGAGTTTTGAATTCGCTCTAGCAGAGG 695525 35 100.0 36 NNNNNNNNNN ................T.................. CGTAATACTTGCGCGTTGCGTATCAGAGCTTAGCAA 695596 35 100.0 35 NNNNNNNNNN ................................... AACACAGAAAAAGCCAACGAGCAGATACTTGAAGC 695666 35 100.0 38 NNNNNNNNNN ................................... GATAATGAATTCGATTGCTACCTTAATTACAGGGGTAA 695739 35 100.0 35 NNNNNNNNNN ................................... GGGTACACAGTCTTCCAATCTTTCAGGAAAGAAAT 695809 35 100.0 42 NNNNNNNNNN ................................... TCTCGAAACCGGCTTCATAAAGTTCCCCATCGACATAACTCT 695886 35 100.0 34 NNNNNNNNNN ................................... TAATTCCTATGGCCGACGCACGCCTTAGCGAAAC 695955 35 100.0 39 NNNNNNNNNN ................................... ATGGGGCTGAAGACCCACTAGAAAAACTCAAGCTATTAA 696029 35 100.0 39 NNNNNNNNNN ................................... ATGGGGCTGAAGACCCACTAGAAAAACTCAAGCTATTAA 696103 35 100.0 36 NNNNNNNNNN ................................... AATAAACAGCAAAAGCAAAATAAATCAATTAACAAA 696174 35 100.0 36 NNNNNNNNNN ................................... GGTGATTTCGCACCAACCAACGCTACATTACCAGAT 696245 35 100.0 35 NNNNNNNNNN ................................... TTTATTGAACTTCATTGGAAATCTTTCCATGAAAA 696315 35 100.0 35 NNNNNNNNNN ................................... AGAACAAGTCAGTGTTACCGACGTCTCAGCAGAAT 696385 35 100.0 37 NNNNNNNNNN .C................................. TCGGGAATCTGGGCTCCCGATGTGTACAAGCAAGGAG 696457 35 100.0 39 NNNNNNNNNN ................................... GCTGTAAGCAAAGACACCAGAGAGCTGGTTAATGTCTTC 696531 35 100.0 34 NNNNNNNNNN ................................... ACTTATCGCACTAGCGCTTACGACAATTTTTACA 696600 35 100.0 36 NNNNNNNNNN ................................... TCTGTAGAAAAACAATGGAATGACCTACAGTTTTTT 696671 35 100.0 34 NNNNNNNNNN ................................... AACTGATTCGGCGCCTGAAACGGTGGAAGAGGCT 696740 35 100.0 36 NNNNNNNNNN ................................... TAAAATGATTAAAAAACAAGCTCTGAACCTATTTTT 696811 35 100.0 35 NNNNNNNNNN ................................... GTGCTAGAACTTGAAGTTGAAGTTGAAAATGTGTT 696881 35 100.0 34 NNNNNNNNNN ................................... ATATATTTTAAAGCACATGGGCGGAGAATTACCT 696950 35 100.0 34 NNNNNNNNNN ................................... AACGAAGGTGTTGTTTCGTTGGATGAACTTCCAG 697019 35 100.0 37 NNNNNNNNNN ................................... ATAATGGTCTCACAAATCTCTGGAGCTGGTACTCTCA 697091 35 100.0 34 NNNNNNNNNN ................................... AAGAAGAGTTCATAAACTCTATTACTTCTGCTAA 697160 35 100.0 36 NNNNNNNNNN ................................... GAAGGGAAAAAAACAAGCTAAGTATACAAAGTCTGA 697231 35 100.0 32 NNNNNNNNNN ................................... GTGAAGTAGTTATTATCTGGAGCAAACGCTTT 697298 35 100.0 44 NNNNNNNNNN ................................... AAAAAAACAGACATTTGGCTGTACATCGACACCGCTGCAAAGCT 697377 35 100.0 38 NNNNNNNNNN ................................... ATGGCGGAATTTTAATTAAGGTAACTAATACAAGCAAA 697450 35 100.0 35 NNNNNNNNNN ................................... TTCTCTGTTTATTTTTTAATAAAAAGTACTCTTTC 697520 35 100.0 38 NNNNNNNNNN ................................... ATGGCGGAATTTTAATTAAGGTAACTAATACAAGCAAA 697593 35 100.0 36 NNNNNNNNNN ................................... TTCTCTGTTTATTTTTTTAATAAAAAGTACTCTTTC 697664 35 100.0 38 NNNNNNNNNN ................................... TGAGCCTGTAGTGATCATGGAAGGAAATAGATTCTCTT 697737 35 100.0 35 NNNNNNNNNN ................................... AACCAACTAGAAGAAGAAACTAGTTATTACTTAAG 697807 35 100.0 34 NNNNNNNNNN ................................... AGGTTGTGAAGCCTTCTTTAAGCAACTATTTTGA 697876 35 100.0 34 NNNNNNNNNN .......................T........... AGGCAAGGATGCCTCCCAAAAGGGGACAAGGAAG 697945 35 100.0 25 NNNNNNNNNN ............AGC.G.T.TGAAAC.CAGA.G.. ATTAATTGGGATAATGTCTCATATG 698005 35 100.0 25 NNNNNNNNNN ............AGC.G.T.TGAAAC.CAGA.G.. ATTAATTGGGATAATGTCTCATATG 698065 35 100.0 1 NNNNNNNNNN ............AGC.G.T.TGAAACAGTACCCTT NNNNNNNNNN ========== ====== ====== ====== ========== =================================== 56 35 35 GTCTCAACGGCCTAAGCGGCCAGCGGGTCTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.80,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [17-21] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [767,224] Score: 0.18/0.18 # # Final direction: F [0.96,0.37 Confidence: MEDIUM] >NC_015276 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3896481 28 100.0 32 AGCTCTATAT ............................ GGCTTTCGATTGTCGCAATGGCGCGAATAATG 3896541 28 100.0 32 GCGAATAATG ............................ TTGGGACGAGATAAGCACGACGAGATGTGTAT 3896601 28 100.0 32 AGATGTGTAT ............................ GTTCCGATTCTCAAAATCTCGGAGGCATAGAG 3896661 28 100.0 32 AGGCATAGAG ............................ AGTTTTGATGATTACTATGACTTCATATTCAA 3896721 28 100.0 32 TCATATTCAA ............................ AGACGTGTTACGGAGGATGGGACACTGGGGGA 3896781 28 100.0 32 CACTGGGGGA ............................ TATGAAGTTTTTTAAAGGTAAAGCGGTCAAGT 3896841 28 100.0 32 GCGGTCAAGT ............................ GCAGAATACGACCTTCTCAGCGCTCGTAGAAA 3896901 28 100.0 32 CTCGTAGAAA ............................ CCGATTTAACAACTAAAACCGTGTACACAATC 3896961 28 100.0 32 GTACACAATC ............................ CTGGTCAGTATGTCGAATTAACAAAATACATA 3897021 28 100.0 32 AAAATACATA ............................ CCAAAGAATGTTTAAGAGAGTTCATGGTGAAT 3897081 28 100.0 32 CATGGTGAAT ............................ CCTGTTCGTGATTTGTATATGTGTTTTGAACA 3897141 28 100.0 32 GTTTTGAACA ............................ ATGATACAAATTCGGAACTTCTAGACATGACA 3897201 28 100.0 32 AGACATGACA ............................ CCAGGTGAATGTGTTTAACACGGTGACCGAGA 3897261 28 100.0 32 GTGACCGAGA ............................ ATCCGCGCTATCGCGCGGAAATCAAAGGGAAA 3897321 28 100.0 32 CAAAGGGAAA ............................ GTAAAAGACGATGACTTAAACGACGATAAAGA 3897381 28 100.0 32 ACGATAAAGA ............................ TTGCACCCGGTACAGCGCGTGTTGTATTACAA 3897441 28 100.0 32 TGTATTACAA ............................ ACGGGGTGTTGTATCAATCACACGCTTAGCAA 3897501 28 100.0 32 CGCTTAGCAA ............................ GCGATTAATGGTGCCCACGGAACGATAATAGA 3897561 28 100.0 32 CGATAATAGA ............................ TTCAAGGTCTTTGCGCTCTCCAGAGGCTATAA 3897621 28 100.0 32 GAGGCTATAA ............................ CTAACGCCTTTTGACTTGGAGTAGTTACCAAA 3897681 28 100.0 32 AGTTACCAAA ............................ AAAAGCCGCGAACGACTTATTTCTAACGAGGT 3897741 28 100.0 32 CTAACGAGGT ............................ TTTACGTGATGATGCTCGCTCCGGTGTGAAAT 3897801 28 100.0 32 GGTGTGAAAT ............................ GATGCCCAGTGCCGTCATGTAGTCTGGGTCGA 3897861 28 100.0 32 TCTGGGTCGA ............................ AGACGCTAATTACGTGCTGAGCGAGCTAATGC 3897921 28 100.0 32 GAGCTAATGC ............................ ATTACGTGCAAAGCTCGCTAATGCGTCGATTA 3897981 28 100.0 32 GCGTCGATTA ............................ AAGGGGAAGTCGGTTGCGGATTCGGTAAGTCA 3898041 28 100.0 32 CGGTAAGTCA ............................ GAGAATATTCGTCTCGGCGCGATGCTCGGCAA 3898101 28 100.0 32 TGCTCGGCAA ............................ GAAAAGACCTGTAATGTTATTTTTTGATAAAC 3898161 28 100.0 32 TTTGATAAAC ............................ CCTCCAATGTACAGTCTAGTTAACAGATTAAA 3898221 28 100.0 32 ACAGATTAAA ............................ AGCATTTCGCTTTTCAATTAGAGTTATATACT 3898281 28 100.0 32 GTTATATACT ............................ TAAACCGAGACGATATCCGAGACGAATTGTTC 3898341 28 100.0 32 CGAATTGTTC ............................ ACGAGTTTTCATGTCCTCGGTGACGTGTTTTA 3898401 28 100.0 32 ACGTGTTTTA ............................ TTGTTTTTAAGGCCATTCATTTGCCGCTTGAA 3898461 28 100.0 32 GCCGCTTGAA ............................ CATTTTATGTGGCTGTTGGCGGGGCGGTTCTA 3898521 28 100.0 32 GGCGGTTCTA ............................ TGCGTCGGGCATGTTTTTTATCAATTCGTAAA 3898581 28 100.0 32 AATTCGTAAA ............................ GATCCCGCAATGGTGGGGTGATTTCCAAGTCT 3898641 28 100.0 TTCCAAGTCT ............................ AATAGTGTAT ========== ====== ====== ====== ========== ============================ 37 28 32 TTTCTAAGCTGCGTGTGCGGCAGCGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [387,329] Score: 0/0.18 # # Final direction: R [0.37,0.64 Confidence: LOW] >NC_015276 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 710416 35 100.0 38 ATGCGTCAAA ................................... GACTTAATCCATCTGACGTGTTCTCAACTTCTATCTAA 710489 35 100.0 36 TTCTATCTAA ................................... CTATCGTATAGCTGAAGACTTGAGCAAGTATTACTT 710560 35 100.0 34 AGTATTACTT ................................... AGCTTGATGAGGAGATGATGGCAATACCGCCAAA 710629 35 100.0 36 TACCGCCAAA ................................... ATTCTGCTCCCATGCCTCCCAGTCTTCGTTCAGTAA 710700 35 100.0 35 CGTTCAGTAA ................................... ATTGATAATTTCCGCCATAACGAAGATAATATCTT 710770 35 100.0 37 ATAATATCTT ................................... TCTGAATACTAACGAAAAATAGAAACCCCAACCCCCA 710842 35 100.0 33 CCAACCCCCA ................................... GGGGAATTGGTTTGCGTGGCGGAGATCTTTAAA 710910 35 100.0 GATCTTTAAA ................................... AGTACCCTTA ========== ====== ====== ====== ========== =================================== 8 35 35 GTCTCAACGGCCTAAGCGGCCAGCGGGTCTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.80,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [46.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [623,1203] Score: 0/0.18 # # Final direction: R [0.37,0.64 Confidence: LOW] >NC_015291 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 563290 35 97.1 31 TTTTATTGAG .............T..................... AATGGAGCCGTTTGTGTTCTAGCTGTGACAG 563356 35 100.0 30 GCTGTGACAG ................................... TAGCTCCGTCATCATCACGAATAGATGACC 563421 35 100.0 30 ATAGATGACC ................................... CACATCCCTTCACTAGAGGGTTGGACCTTT 563486 35 100.0 30 TTGGACCTTT ................................... CTTGGCGTAGGTGGGCGTAAAAGGCAGCAA 563551 35 100.0 30 AAGGCAGCAA ................................... TAAGGCATTTGTTAGCTGTAATGGTATTAA 563616 35 100.0 ATGGTATTAA ................................... CTCAAATGGTA ========== ====== ====== ====== ========== =================================== 6 35 30 GTTTTATCGGTCACAATTTTGGAGACTACAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.71%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [454,300] Score: 0/0.18 # # Final direction: R [0.37,0.41 Confidence: LOW] >NC_015277 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================================ ====== 4964377 48 95.8 60 TCGGTAATAC .......................T........G............... CGTTTCTTCTTGCCATAAGGACGTAGGAACGTCATCGTAAAGTCGATAATACGTTAAGTA 4964485 48 100.0 60 ACGTTAAGTA ................................................ CGTTTCTTCTTGCCGTAAGGACGTAGGAATGTCATCGTAAAGTCGGTAATACGTTAAGTA 4964593 48 100.0 52 ACGTTAAGTA ................................................ CGTTTCTTCTTGCCGTAAGGACGTAAAAACGTCATCATAAAGTCGGTAATAC 4964693 48 95.8 TCGGTAATAC .......................T........G............... ========== ====== ====== ====== ========== ================================================ 4 48 57 GTTAAGTAGTTAAATAGTCAGGTAGTTGAGAAATTAAAGACTACTCGT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.75%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.10,-2.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [34,170] Score: 0.18/0.18 # # Final direction: F [0.37,0.18 Confidence: MEDIUM] >NC_015311 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================================== ====== 2703237 50 98.0 27 GATAAGGGGC ................................................G. AGGAGCGCAGGGTGCGTCGCCGGTCAT 2703314 50 100.0 26 CGCCGGTCAT .................................................. ACGGATTCGAGTATGAAATGCAGATG 2703390 50 100.0 AATGCAGATG .................................................. TGTCATTAAC ========== ====== ====== ====== ========== ================================================== 3 50 26 ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAACGCA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.20,-5.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [766,2488] Score: 0.18/0.18 # # Final direction: R [0,1.23 Confidence: HIGH] >NC_015311 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================================== ====== 2704466 47 100.0 30 ATGATATTTC ............................................... GACGAGAATACCAAGAAGCAAGCGAGCAGA 2704543 47 100.0 30 AGCGAGCAGA ............................................... TGAGGTGGTAGGTAGGGTATTTTCTCCATT 2704620 47 100.0 30 TTTCTCCATT ............................................... AAATGGTCATCCGTGTACACATTGCGTGTA 2704697 47 100.0 30 ATTGCGTGTA ............................................... GGTAAGGAGAAGATTGTTGTCAGCCCTATT 2704774 47 100.0 31 CAGCCCTATT ............................................... TTCATCAACAAACTCTTTGAAACGCTCAAGT 2704852 47 100.0 30 ACGCTCAAGT ............................................... ATATTGTAGGTTGGTTCAAAAAGACTTTCC 2704929 47 100.0 30 AAGACTTTCC ............................................... GGTATATTCATTCCAATGATTGTTCCCTTA 2705006 47 100.0 TGTTCCCTTA ............................................... CACCAAACGG ========== ====== ====== ====== ========== =============================================== 8 47 30 ATTGTGCTTGCTACTGCAAAGATACACATTTTGAAGCAATTCACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.83%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.10,-5.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1995,875] Score: 0.18/0.18 # # Final direction: F [0.45,0.37 Confidence: LOW] >NC_015311 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2808033 37 100.0 35 AGTCTTTACT ..................................... TAACGACGGTTTCGCCGTCGTTGTTAAGCTCTGCA 2808105 37 100.0 34 AAGCTCTGCA ..................................... GTTTTTGGATCTTCGACCCGAACTTTTTTTTATT 2808176 37 100.0 35 TTTTTTTATT ..................................... ATCCTGATTCTCAACCTTATTAGGTTTTTTGGATC 2808248 37 100.0 31 TTTTTGGATC ..................................... TCGAGGGCTTAAAGGGTTATATTAATTTCGG 2808316 37 100.0 36 TTAATTTCGG ..................................... CCTTGTTTTACTCTCATAATTAACTTTGTAAAAGTA 2808389 37 100.0 34 TGTAAAAGTA ..................................... TCATAATTAACTTTGTAAAAGTAAGCGTACCGCC 2808460 37 100.0 38 GCGTACCGCC ..................................... TGGAAATGCCCACACCAAAATAATGTCGTGACAAATAA 2808535 37 100.0 37 TGACAAATAA ..................................... TGCAGCGAATAACTCGTCCATGCTATCATAGTTCTGG 2808609 37 100.0 37 ATAGTTCTGG ..................................... GCTGTTTTTGCCTAACATATCGGGAAAGGCTTAAATA 2808683 37 100.0 34 GGCTTAAATA ..................................... CGCGCGTGTCTCCTTGTTGTCGCAAAAAGCCAAA 2808754 37 100.0 33 AAAAGCCAAA ..................................... CACCCCGACACTCATCAACGAGTGGATGTCGGA 2808824 37 100.0 33 GGATGTCGGA ..................................... AAATATATATTGTTGCAATAAGTCAAAGATGGA 2808894 37 100.0 37 CAAAGATGGA ..................................... AAGATTTCCCATATAATTGCAATTTTTGGTTACCGAA 2808968 37 100.0 34 GGTTACCGAA ..................................... AAGAGAATTTATTCTGCTCTGTAATTGGTAAAAT 2809039 37 100.0 36 TTGGTAAAAT ..................................... AATGCTTGCTTTTTTTGTCCCTAAAGCAGTTTGTAA 2809112 37 100.0 36 CAGTTTGTAA ..................................... GAGCCTCTAATCAAACTTCCCATATAATTGCAATCT 2809185 37 100.0 37 ATTGCAATCT ..................................... TTGCAAAACTCCCCGCTGTGTCGCTTACATAATAGTG 2809259 37 100.0 36 CATAATAGTG ..................................... AGTTTATTTCCGTTGTTATCAACTCCCTTAACTTTC 2809332 37 100.0 36 CTTAACTTTC ..................................... GACGAGACACCACGCTTCATTTATTCTAAACGAAAG 2809405 37 100.0 35 TAAACGAAAG ..................................... TCTATGTCATGCGTGTACTTTTCGCAAGTAGTGTA 2809477 37 100.0 36 AAGTAGTGTA ..................................... TATGTTTTTTTTAAGTCTTGTAGATTCATGACTTTA 2809550 37 100.0 35 CATGACTTTA ..................................... ATCACTACACTCTTTATATGTTTTTTTTAAGTCTT 2809622 37 100.0 33 TTTAAGTCTT ..................................... ACCTTCCTGGCCTCGCTTGATGAAGACTTCCTT 2809692 37 100.0 38 AGACTTCCTT ..................................... GGCTTGCTTAAAGGTCATGTAGACAGGGGTGTTGTATC 2809767 37 100.0 36 GTGTTGTATC ..................................... CCGCACATTGTTTACTTGCTGTAAGTTCTGTTAAGT 2809840 37 100.0 35 TCTGTTAAGT ..................................... GATTTGTTGAGTTCGTTTGCCGTGCAGATTGTTAC 2809912 37 100.0 35 AGATTGTTAC ..................................... CACGCTTTAAGCAAGCAGCGAAACTTTCGCCTGTA 2809984 37 100.0 36 TTCGCCTGTA ..................................... TTTCTTAAAGATTTTTTTTCTTTGTCAGTGCAGTCC 2810057 37 100.0 35 AGTGCAGTCC ..................................... CTTATTTGCCACAACCAAAGCAGACTCCTTTGGCT 2810129 37 100.0 36 TCCTTTGGCT ..................................... TTCAGAGCCTCCTTGAATTCCTTAGAGTTTTGATCC 2810202 37 100.0 37 GTTTTGATCC ..................................... AAAGGGCATACGCTCTCTTAGACATTCTTATCGCCAC 2810276 37 100.0 37 TTATCGCCAC ..................................... TCTAAGTAAATATTTCATAATTATAGTTATTATAGTT 2810350 37 100.0 36 TATTATAGTT ..................................... ACAATTCCTTTTACTTCTACCCCAGGTAAAAGTACT 2810423 37 100.0 36 TAAAAGTACT ..................................... AATCTCTTCAAATTCTTTCTCATCACCCTTGAAGAA 2810496 37 100.0 35 CCTTGAAGAA ..................................... TTGTTTTTCTCTGCGAAGTCAACTGCCTCTTGGAA 2810568 37 100.0 35 CCTCTTGGAA ..................................... CGAAGGCATCACAGCATTACGCACAAGCTGTCTAA 2810640 37 100.0 35 AGCTGTCTAA ..................................... TCCGTATTTAAGAGCGATAAGAATATCGTTTTTCT 2810712 37 100.0 38 TCGTTTTTCT ..................................... CATCGGAGAAAAACGTTTTCTCATTCACGCGCTCCACT 2810787 37 100.0 34 GCGCTCCACT ..................................... TCAGAGTAATAAGAGTAATAAATGAAACCGCCAA 2810858 37 100.0 34 AAACCGCCAA ..................................... TCAGAGTAATAAGAGTAATAAATGAAACCGCCAA 2810929 37 100.0 34 AAACCGCCAA ..................................... CTCTGATATGTAGTCATTGGGAATTTCATTGTAG 2811000 37 100.0 35 TTCATTGTAG ..................................... TTTTTCATGCTAAGTCTGACCCTTATTCTAAGATT 2811072 37 100.0 TTCTAAGATT ..................................... TTTGCAAGAA ========== ====== ====== ====== ========== ===================================== 43 37 35 CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [235,152] Score: 0/0.18 # # Final direction: R [0,0.37 Confidence: MEDIUM] >NC_015312 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================== ====== 3052241 21 100.0 37 NNNNNNNNNN .......GA............ GGGGCGTCCTCTCGGTCGTGGGTCGTGTGGGGCGTGT 3052299 21 100.0 38 NNNNNNNNNN .......GA........T... CGGAGCTCCTTCGGGTCGCGGGTCGGCGGTCGGGACGG 3052358 21 100.0 35 NNNNNNNNNN .......GA............ GTCGCGCTCCTTTCGGACGGGTCTGCTCGGGTGGG 3052414 21 100.0 43 NNNNNNNNNN .......GA...........T CTGCGGGCTCCTCTCGTGGGTCGGCGGGTCGGGCGGGCGTTGC 3052478 21 100.0 37 NNNNNNNNNN ..................... GTCGCGCTCCTCTCGGATCGGGCCTGTTCGGGGTCGG 3052536 21 100.0 38 NNNNNNNNNN ..................... CTGCGTGCTCCTTCCGTCGGCGGGTGGTCGGGCGGTGG 3052595 21 100.0 43 NNNNNNNNNN .................T... GGGCTCCTCCTCGGGTCCTGGGCCTGCGGGGTGGTCGGGCGGG 3052659 21 100.0 40 NNNNNNNNNN ..................... GGGGCGTCCTCTCGGTCGTGGGTGGCGTTTCGTGGGCGTC 3052720 21 100.0 42 NNNNNNNNNN .......GA...........T CTGCGTGCTCCTTCCGGGTCGTGGGGCGGGTGGCCTCGGTGG 3052783 21 100.0 40 NNNNNNNNNN ..................... GGGGCGTCCTCTCGGTCGTGGGTGGCGTTTCGTGGGCGTC 3052844 21 100.0 42 NNNNNNNNNN .......GA...........T CTGCGTGCTCCTTCCGGGTCGTGGGGCGGGTGGTCTCGGTGG 3052907 21 100.0 40 NNNNNNNNNN ..................... GGGGCGTCCTCTCGGTCGTGGGTGGCGTTTCGTGGGCGTC 3052968 21 100.0 41 NNNNNNNNNN .......GA...........T CTGCGTGCTCCTTCCGGGTCGTCGGGCGGTGGCCTCGGTCG 3053030 21 100.0 43 NNNNNNNNNN .................T... GGGCTCCTCCTCGGGTCCTGGGCCTGCGGGGTGGCGGGGCGGG 3053094 21 100.0 38 NNNNNNNNNN ..................... CTGCGTGCTCCTTCCGTCGGCGGCTGGTCGGGCGGTGG 3053153 21 100.0 39 NNNNNNNNNN ..................... GGGGCGTCCTCTCGGTCGCGGGTGGTGTGTGCGGGTGCC 3053213 21 100.0 40 NNNNNNNNNN .......GA............ CGGGCACTCCTTCCGGGTCGTCGGTCAGCGGTCAGGGCGG 3053274 21 100.0 41 NNNNNNNNNN ..................... GGGCACTCCTGTTCGGTGGGCGGACGGCTGGGCGGCTCGGG 3053336 21 100.0 40 NNNNNNNNNN ..................... GGCGACGTCCTTCCTGGAGGGCGGTCGGATCGGGTGGTTC 3053397 21 100.0 1 NNNNNNNNNN ..................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================== 20 21 39 TCACCAGCTCTTGTTGCGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [11-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [23.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [242,653] Score: 0.18/0.18 # # Final direction: R [0,1.23 Confidence: HIGH] >NC_015320 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 665147 30 100.0 39 NNNNNNNNNN .............................. GAGATTTCCCCTTTCAATCCTCATCCTCATCTATCTCCC 665216 30 100.0 38 NNNNNNNNNN .............................. CTGCGACGTATCAAGAGTCTTTCCGTTAGCCGTTTCAT 665284 30 100.0 38 NNNNNNNNNN .............................. GCACAGAAAATTGAGTGCTGGAGAGGATGCAAAAAAAT 665352 30 100.0 37 NNNNNNNNNN .............................. ATCGGGGAGGGAGATTAGGATGGATATAGAGTGTCTA 665419 30 100.0 40 NNNNNNNNNN .............................. GAGTTCTTTGGCAGAGATAAGTTCAGTAAGGTTATCTCAA 665489 30 100.0 38 NNNNNNNNNN .............................. GCGCTATTCTTTTACTTCTCGCAATGCGGTAATCAATG 665557 30 100.0 38 NNNNNNNNNN .............................. AAGCGCTTGGCTGCTTACTGCGTGGCTCAGTACTGCGC 665625 30 100.0 38 NNNNNNNNNN .............................. GAGGTGGTTAGAGACATCTTGAATAAAATGATGGGCAA 665693 30 100.0 38 NNNNNNNNNN .............................. CTTATTGACTTCTTCAATTCTCCCTTTTAGATATAGAT 665761 30 100.0 37 NNNNNNNNNN .............................. GCATAACAGAGTGCGCCCTCCGTGCCTCCCGTTCCGT 665828 30 100.0 39 NNNNNNNNNN .............................. ATGGGGGAACTGGCTCGAACTCGCTGATTTCTTCGAAGA 665897 30 100.0 37 NNNNNNNNNN .............................. CAAATTAGCAAGGGCTACAACGATACCATCATACGGA 665964 30 100.0 38 NNNNNNNNNN .............................. ATCAACATCGGTCCGGGACAATATCAGTTCAAGGCGAG 666032 30 100.0 38 NNNNNNNNNN .............................. CTATGAGTACTGTAAAAGGAATTTAAATTTAAAATAGG 666100 30 100.0 38 NNNNNNNNNN .............................. TTCTAATGCCGTGAAGTATGCTCTTTTTGCTTCGGGAG 666168 30 100.0 38 NNNNNNNNNN .............................. GATTGTGGCGGTGATTTGGTGGACTTAGGCAACAATGA 666236 30 100.0 37 NNNNNNNNNN .............................. TACTTCAGACAATACAATATCCCAATCGAACAACACA 666303 30 100.0 39 NNNNNNNNNN .............................. ACGGTGAACGTTGATCATCCTTTGATTGTCTTGCTGGTT 666372 30 100.0 38 NNNNNNNNNN .............................. TGTCCATCAAAAGGCCTAACGGAGGATGAGGTTCAAGA 666440 30 100.0 38 NNNNNNNNNN .............................. TTCCCACTTGATGATACCCTGACCTTCATTCTTTTCGA 666508 30 100.0 39 NNNNNNNNNN .............................. TTGTGGTATAATTAATAGTTCTCATCTGCCATTTTTTAT 666577 30 100.0 36 NNNNNNNNNN .............................. GCTCGCAAGGAAATGCTGAACGGAAATAGGCACACC 666643 30 100.0 43 NNNNNNNNNN .............................. ACTCTTTCACCTCCTAACAGCTTTTTTCTATATACTGTCACTG 666716 30 100.0 39 NNNNNNNNNN .............................. TCTATACCACCTCAAAAAATGTTTAAGGAAGCAGAATCT 666785 30 100.0 38 NNNNNNNNNN .............................. TTTGGGGTAACTGGCTTGAGCTTGCAGACTTCTTAGAG 666853 30 100.0 39 NNNNNNNNNN .............................. GCGAGCATGAACGGGAACTGCACGAATCCGCGGGCTCCC 666922 30 100.0 39 NNNNNNNNNN .............................. ATAGCTGCAAAAATCTTTTGCATCCCTGCAAGTCCCCTT 666991 30 100.0 37 NNNNNNNNNN .............................. GCAAATAATCTATAAACTGTCTCGCTAAGTCGAAAGC 667058 30 100.0 39 NNNNNNNNNN .............................. CTCGAGTTCCCTGCTCATCCTGCTATATCTCTCAAAAAT 667127 30 100.0 40 NNNNNNNNNN .............................. AGGATTACAGCCGGAATCCTCAGCCAGCCGACGAAGTAGA 667197 30 100.0 37 NNNNNNNNNN .............................. AGATTGCCCCCCTCAGCATGGCGGGGGACATTCGCGA 667264 30 100.0 39 NNNNNNNNNN .............................. TATTGTCAACCTTTTAATTCGCTCTTTCAATGCCCTAAA 667333 30 100.0 38 NNNNNNNNNN .............................. TAGAGGAATGGGAAATTCTGGGGAAGGATGACGAAAAA 667401 30 100.0 39 NNNNNNNNNN .............................. CTAAGAAGGCTTATAGTTGAGCACAGACACTTGGATTTA 667470 30 100.0 39 NNNNNNNNNN .............................. TAGGGGGGAGGTAGATGAGGATTGAAAGAGGGAATCTCA 667539 30 100.0 38 NNNNNNNNNN .............................. GAGAAGAGCTGACGTTCACTGAAGAGGACGGAAACAAC 667607 30 100.0 39 NNNNNNNNNN .............................. CTGGGGTAACTTTCCGAAGTTCAAATGCAGGCATGAACT 667676 30 100.0 37 NNNNNNNNNN .............................. GATTCTAAGTTAAAATAGATGGGTTGAATAAAAAAAG 667743 30 100.0 41 NNNNNNNNNN .............................. GGACATGGGGCAATAAGCAGCCATTCAGCCCAGAGCCATCT 667814 30 100.0 39 NNNNNNNNNN .............................. ATAGAGTTCTATGTTGTAGTATGTTCCTGCAGAGAGATC 667883 30 100.0 38 NNNNNNNNNN .............................. CATGCTCTTGCTGAGCCATAGCCAAGCCCATGAAGCGG 667951 30 100.0 38 NNNNNNNNNN .............................. ACGTAGATTTGACATTCTCAGCGGGCGCAACGAGGCAG 668019 30 100.0 38 NNNNNNNNNN .............................. TTACATATATCTACAAAAGCTGCACAATCTGCAGCATC 668087 30 100.0 38 NNNNNNNNNN .............................. AATAAGAGCGGGCGAGTATGGCGACATGAGCGAGGCAA 668155 30 100.0 42 NNNNNNNNNN .............................. CTTCGAATGGGATAAGGGCTTAGAGGATTTGGCCGAATGGGA 668227 30 100.0 39 NNNNNNNNNN .............................. CATGCTGAAAACTACATTGTCTTCAAGGGCGTTTCTTAT 668296 30 100.0 38 NNNNNNNNNN .............................. AATCCTGTGACAGTGCAACGTATTACTTTACTATTCAT 668364 30 100.0 38 NNNNNNNNNN .............................. GACTCTGTGTGTGAGGTGGTGGTAGAGATGGAGCAAAA 668432 30 100.0 38 NNNNNNNNNN .............................. TTTTGAGAAAATAAGACGTATAAACCTTTGTAACAATG 668500 30 100.0 38 NNNNNNNNNN .............................. AAATTCCTCGGACGGGATAAGTTCAGCAAAGTTATCGC 668568 30 100.0 38 NNNNNNNNNN .............................. GTTTGATGTGCGAATGTGGATACTCGAAGAGGTATGTT 668636 30 100.0 38 NNNNNNNNNN .............................. TTGAACCATATCTCGTTCTGAGGGAAACTCATCTGAAC 668704 30 100.0 38 NNNNNNNNNN .............................. GTTCCAGCCTGTGATAATAAAAAGCACCACAGCACCGA 668772 30 100.0 38 NNNNNNNNNN .............................. ACATAAATCATTATCCTGTCGAAGTTTCAGATTATTTG 668840 30 100.0 39 NNNNNNNNNN .............................. GATATACCATCAACTGAATTACCTGAATTGCCATTAACA 668909 30 100.0 39 NNNNNNNNNN .............................. GTTGCGTATGCGCCCAGATATGGTACGAACTGTTCAAAA 668978 30 100.0 39 NNNNNNNNNN .............................. CGCTGGGACGATAATCAGACTTGTAAACGCTGATGCTAC 669047 30 100.0 38 NNNNNNNNNN .............................. CGCTGATACAGCTTCAGCGGAGTCATACGCTTAATCCT 669115 30 100.0 38 NNNNNNNNNN .............................. TTCTATTTCTCGTCCGATATCCCTACTGTAGTGTCTTA 669183 30 100.0 38 NNNNNNNNNN .............................. AATTTATTGGGCCGATGGCAACACGCCCAGCTGAGCTT 669251 30 100.0 38 NNNNNNNNNN .............................. TTTTGTCCCGCTGAGCACGTGCACGCTGCGAATGATTG 669319 30 100.0 38 NNNNNNNNNN .............................. TTCATTCTCTCTTTCAATCTCAGCAATCTTACTCATTA 669387 30 100.0 39 NNNNNNNNNN .............................. TACTTGCGGAGCTACTACGACAAATACGCCAAACTGCTC 669456 30 100.0 38 NNNNNNNNNN .............................. GTAGGGATTTCTTTAATCCAGGTTTCGTCAATTGCTGC 669524 30 100.0 46 NNNNNNNNNN .............................. ACATCTGAATCTTCGAATACCTCAATGCTGTATATGCTCGCTGTGC 669600 30 100.0 39 NNNNNNNNNN .............................. AGTACCCTTTCAAGCACAATCACGGCGATATCGTCTGCA 669669 30 100.0 42 NNNNNNNNNN .............................. CTTTGTACCTCAGCATAGCTCCCACAACACCGAGCAGCCCGG 669741 30 100.0 1 NNNNNNNNNN ....................A......G.A NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 68 30 38 GTTGAAATCAGACTAATGTAGGATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [329,101] Score: 0.18/0.18 # # Final direction: F [5.46,0.27 Confidence: HIGH] >NC_015320 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 83683 30 100.0 37 ATTACTGATA .............................. AACTGTGACCGAATCGAGAAACGAAAGAAAAGAAAGA 83750 30 100.0 45 AAAAGAAAGA .............................. CGTTTAGAAACGTCCCCGGCCATGTCGAGGGGGGCTATTTTGTTG 83825 30 100.0 38 TATTTTGTTG .............................. CGAGAAATGGTCGAAGCGATAGGGCTGAAAGAAGGCGA 83893 30 100.0 38 AAGAAGGCGA .............................. TGCTCGGGGCGTTAAGTGTTGGGAAGATAGGAAAGGCA 83961 30 100.0 37 AGGAAAGGCA .............................. TCCCACGGTAGCATTCTGGTAGTAAATCCATCACCTG 84028 30 100.0 37 CCATCACCTG .............................. CCAGATAGCTTCATGAGGAGATAGATAACTGCACCTA 84095 30 100.0 37 ACTGCACCTA .............................. GAGCAGGAGCGGGAGCACTTGGTGGAGCAATAGGCGG 84162 30 100.0 38 CAATAGGCGG .............................. GTTCAGATCGAAGGACAGATCAGGTTGGAGATTAGAAA 84230 30 100.0 36 AGATTAGAAA .............................. CAGATTGGCTGGCAGGCTGGCAAGGGGTTCTACGAC 84296 30 100.0 38 GTTCTACGAC .............................. GAGGGAGACGGGCGGTGTGTAGCATGGCAGGGTATAGG 84364 30 100.0 36 AGGGTATAGG .............................. GTATTTAGTGGTGGAATGTCTGTATCCTGTACTGGA 84430 30 100.0 38 CTGTACTGGA .............................. CTGGTTCGTTCTTTCTCTCTGCGCGTACGACATCAAGT 84498 30 100.0 38 GACATCAAGT .............................. TTCCCGTTGACTGTTTCTTCGTCTGCAAATCTCTTCGG 84566 30 100.0 36 ATCTCTTCGG .............................. CCGTCAGGTGGTGGTGGAGGTATTGTAATCAAGTAA 84632 30 100.0 38 AATCAAGTAA .............................. ATTGCTACACGTCCAGCACTGGCCGGACTCATTGTAGT 84700 30 100.0 39 TCATTGTAGT .............................. AACAGGAAGATGGACAAGCCCAGCACGCCAGCGAAGATC 84769 30 100.0 38 AGCGAAGATC .............................. TAATGGTTGCCGGGAAGGCGATTTTGTTAATGAAAGCG 84837 30 100.0 37 AATGAAAGCG .............................. CATGTCGCATCTATACTGATGCGGTGTTTTAAAATGT 84904 30 100.0 38 TTTAAAATGT .............................. TCTGCCGGGAATAAGGGGGAGGATATGATGGATACAAA 84972 30 100.0 38 TGGATACAAA .............................. GAGTGTCGATGAGGGCGGCGCATTCACGAAAATAAACG 85040 30 96.7 38 AAAATAAACG ...............A.............. AACGGGCACCGGGCCGTTGAGGATTTACTCTCTCAAGA 85108 30 93.3 TCTCTCAAGA ...............A.............T GCAGCCCGG ========== ====== ====== ====== ========== ============================== 22 30 37 GTTGAAATCAGACTATTGTAGGATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [436,101] Score: 0.18/0.18 # # Final direction: F [5.73,0 Confidence: HIGH] >NC_015321 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================================ ====== 3601762 48 100.0 29 ACTTAATCTA ................................................ TAGCCTCTAGGTAGGCATCTGATTGATAC 3601839 48 100.0 29 TGATTGATAC ................................................ ATAAACAATCGGTCAACTGGTCCGTTAGG 3601916 48 100.0 GTCCGTTAGG ................................................ TACCAATAAA ========== ====== ====== ====== ========== ================================================ 3 48 29 TGTTGTGATTCGCTTTCAATTTGTATTTTTAGAACGATAGCACACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.60,-2.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [149,5361] Score: 0.18/0.18 # # Final direction: R [0.37,4.68 Confidence: HIGH] >NC_015321 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================================== ====== 3603532 47 100.0 31 TCAAAAACAC ............................................... ACCTCTTAAACATTGGCGCACAAAATCTTCT 3603610 47 100.0 30 AAAATCTTCT ............................................... CAAGGATCATTGATTTGCTGTATTGTTGGC 3603687 47 100.0 30 TATTGTTGGC ............................................... TTTCACTTTTCGAATCTGAAGATCCTTCAG 3603764 47 100.0 30 GATCCTTCAG ............................................... TCCTGTAGAGTTATTTCATTTGATGTAGCT 3603841 47 100.0 30 TGATGTAGCT ............................................... TTTTTTGACTGTTTGGCTGTAGAGGTTTCC 3603918 47 100.0 30 AGAGGTTTCC ............................................... TTCAGTTATGTGTGGAGTGGGTCCTATAAT 3603995 47 100.0 30 GTCCTATAAT ............................................... GAAACGATAAACAGTTAGGTGAGCATTACG 3604072 47 100.0 30 GAGCATTACG ............................................... AGTACTCTTTTTAAAGCCTACTTCGAAATT 3604149 47 100.0 30 CTTCGAAATT ............................................... TGTTGGATCTGTTCCGTGGTGACTGTACGT 3604226 47 100.0 29 GACTGTACGT ............................................... ATGTGGAACATACGCGATGCAGATTCTTT 3604302 47 100.0 30 CAGATTCTTT ............................................... GATAGGCAGGGACAGCCGAAAAATGTCATA 3604379 47 100.0 30 AAATGTCATA ............................................... AGATCAAATCGGTATGTATAGCTATCTTGT 3604456 47 100.0 30 GCTATCTTGT ............................................... AGATTTGCAGATACATCACAATCAGCCCAC 3604533 47 100.0 30 ATCAGCCCAC ............................................... ACATACATAAAACAACCAACCGACATCTCA 3604610 47 100.0 29 CGACATCTCA ............................................... CTAGCTATGGAGATATTCGAGACCTCGAC 3604686 47 100.0 30 AGACCTCGAC ............................................... GACGAACTTGTTGATAAGTTAGAGCAAATT 3604763 47 100.0 29 AGAGCAAATT ............................................... TTTTAGGAAAGAGATATGAGTAATCAGAC 3604839 47 100.0 30 GTAATCAGAC ............................................... CCACAGTTGGGCGAAAACGTTAAGCGCATT 3604916 47 100.0 30 TAAGCGCATT ............................................... AGCGCGTAAAAAAAGAGACGAACTAAAGGC 3604993 47 100.0 30 AACTAAAGGC ............................................... AAGCAGATTTGAAGACAGCTCAGTCAGCTG 3605070 47 100.0 30 CAGTCAGCTG ............................................... AAGATGAAAATTGAAAGATCTCATGTCCAA 3605147 47 100.0 30 TCATGTCCAA ............................................... AATAATGCAAATGGAAGTTTTAGAATAAGT 3605224 47 100.0 30 TAGAATAAGT ............................................... TTGTAAAGGGCGGTCAAGGCGAAGTCTTTG 3605301 47 100.0 30 GAAGTCTTTG ............................................... TTAGTGAATCTATGTTTAAAAGATTCTTCA 3605378 47 100.0 30 AGATTCTTCA ............................................... TTTTAAATCATTCGGTTGGTATGCGTTACA 3605455 47 100.0 30 ATGCGTTACA ............................................... AAATAGAAAGAATCGACTACACTTTGTAAG 3605532 47 100.0 30 ACTTTGTAAG ............................................... GAATATATGTTTCTGACGATGACAAAAACA 3605609 47 100.0 30 GACAAAAACA ............................................... TACTTCCTGTCGAACCGTAGGTTTGATCAC 3605686 47 100.0 29 GTTTGATCAC ............................................... TCAATCAACACAACTTTCTATCATTTACA 3605762 47 100.0 30 ATCATTTACA ............................................... GAACTAATAACATATCTTGAATCAATCGGA 3605839 47 100.0 30 ATCAATCGGA ............................................... CACACCATCTAATGATATCCCAAAGAATTA 3605916 47 100.0 30 CAAAGAATTA ............................................... AAACAACCAACATCAATCAAACCAACAACA 3605993 47 100.0 30 ACCAACAACA ............................................... AACCAAAGATAGTTATTTTATAATGTTACA 3606070 47 100.0 29 TAATGTTACA ............................................... ATAACATAAAACAATTCAAACAATAAACA 3606146 47 100.0 30 ACAATAAACA ............................................... TAGAGGCACAAACCGCAAAAGCGTAATGGG 3606223 47 100.0 30 GCGTAATGGG ............................................... TTTAACTGGGGTTGTTTATTGTAATGGGAA 3606300 47 100.0 30 GTAATGGGAA ............................................... TTCGGAAGGGAAACGCAAAAGGGGATAGAA 3606377 47 100.0 30 GGGGATAGAA ............................................... AGAATTTAACCGCAGGACAAAGTGCTGGTC 3606454 47 100.0 30 AGTGCTGGTC ............................................... TTCGGAAGGGAAACGCAAAAGGGAATAGAA 3606531 47 100.0 30 GGGAATAGAA ............................................... GCATTTCGGAATTGTTATTTCTGGACAATT 3606608 47 100.0 30 CTGGACAATT ............................................... TAAACTCACACAAACACAGCAGTTGATTCT 3606685 47 100.0 30 AGTTGATTCT ............................................... AGAGCCTACATCAATAATAGATGTAGGCTC 3606762 47 100.0 30 ATGTAGGCTC ............................................... TGAGATGTGCGGACATGATGCTGAAAAAGC 3606839 47 100.0 30 CTGAAAAAGC ............................................... ATTGGAAAGAATGGTATGCCTGAAGAGATT 3606916 47 100.0 30 TGAAGAGATT ............................................... TTCTTTTGGTGGCGGAATGTTCGCTAACTA 3606993 47 100.0 30 TCGCTAACTA ............................................... GTTTTCATCTTTTTCGTTTTTGATTACCTT 3607070 47 100.0 TGATTACCTT ............................................... TAGGTGGGCT ========== ====== ====== ====== ========== =============================================== 47 47 29 GTTGTGATTCGCTTTCAATTTGTATTTTTAGAACGATAGCACACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.96%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.60,-2.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1919,208] Score: 0.18/0.18 # # Final direction: R [0.55,4.5 Confidence: HIGH] >NC_015383 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 402907 20 100.0 42 NNNNNNNNNN .................... CCGCCAATCAGAAGCTAACGCGCCCACGGCAATCTACGCCGG 402969 20 100.0 46 NNNNNNNNNN .C.................. TTCGTGTTGCCCAGGACGGGCCGCCTGACACAAGGTGGCCACCACC 403035 20 100.0 42 NNNNNNNNNN .................... CTGCGAACCAGAAGCCAACGCGTTCCTGGCAATCCATCCCGG 403097 20 100.0 43 NNNNNNNNNN .C.................. TTGCCGCGTCCAGGGTGGTCCGCCTGACTCTGGCTGACCACAC 403160 20 100.0 42 NNNNNNNNNN .................... CCGCCAATCAGAAGCTAACGCGCCCACGGCAATCTACGCCGG 403222 20 100.0 43 NNNNNNNNNN .C.................. TTGCCGCGTCCAGGGCGGTCCGCCTGACTCTGGCTGACCACGC 403285 20 100.0 42 NNNNNNNNNN .................... CCGGCGGGCGGAAGGTAACGCGTCAACGGCAACCCTTTGCAG 403347 20 100.0 43 NNNNNNNNNN T...G............... TTCATAGCAACTCAGGGTGCCCGCCTCACGCCACTGGCCACCA 403410 20 100.0 1 NNNNNNNNNN .................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================== 9 20 42 CTCGATCTCCACGTGGAGAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [31.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [686,159] Score: 0.18/0.18 # # Final direction: R [0.59,0.64 Confidence: LOW] >NC_015376 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================================================== ====== 931696 63 100.0 45 AGGTGCTCAG ............................................................... CGAGCTCGTCGCGCTCGACAGGCCGGTGGACGCCGACGTGCTCAA 931804 63 100.0 45 ACGTGCTCAA ............................................................... CGAGCTCGTCGCGCTCGACAGGCCGGTGGACGCCGACGTGCTCAA 931912 63 98.4 ACGTGCTCAA .......................................G....................... ========== ====== ====== ====== ========== =============================================================== 3 63 45 CGATGCCACCGTGCTGTTGGTCGTGCTCAGGCCCGTCGAAGTCGAGCTCGACAGCGCGGTGAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [9,13] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-23.00,-14.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [33.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [2380,1495] Score: 0/0.18 # # Final direction: F [1.05,0.37 Confidence: MEDIUM] >NC_015387 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1465975 29 100.0 40 AAGGAAGGGA ............................. GAGACACGCGGGGTGTTTGTTCTATACTCGAGGTGTCCCG 1466044 29 100.0 37 AGGTGTCCCG ............................. AGAGTTCGCGAAAGCGGTCCTTGAAGAGCTCGAGGAG 1466110 29 100.0 40 GCTCGAGGAG ............................. CTCCTTAGCGCGGTGAGCGGTGAGCGCCCCCCGCGCGAAG 1466179 29 100.0 40 CCGCGCGAAG ............................. CTCCTTAGCGCGGTGAGCGGTGAGCGCCCCCCGCGCGAAG 1466248 29 100.0 40 CCGCGCGAAG ............................. CCCGGAAATGCTGATCACGAGCAGGCGGCACCCCGTCACG 1466317 29 100.0 39 CCCCGTCACG ............................. CTGCACAAGGGCATGGCAGGGGGGGCGGACGTATTGGCG 1466385 29 100.0 39 CGTATTGGCG ............................. CGCGGCCAGCGCCTCGCCGACGCCGAGCATGTCCAGGAG 1466453 29 100.0 41 TGTCCAGGAG ............................. CTGCCCGCAACGGGTTCCAACCTCCGCGCCGCCGCTTCATG 1466523 29 100.0 38 CCGCTTCATG ............................. CCGGGCGCGGCGTGAGGCGGATATGTGGGCCAGGGAGG 1466590 29 100.0 38 GCCAGGGAGG ............................. CTGCGGATCGTGATCGGTGTGGGCTACGTGGGAGCGGG 1466657 29 100.0 38 TGGGAGCGGG ............................. CCCCGAGAGCCCGAGCCCGTTCCAGCGCTTCATTGACG 1466724 29 100.0 37 TTCATTGACG ............................. CGAAAGAACTCCCGCTCCCGGAACTCCGGGAGCGATA 1466790 29 100.0 37 GGGAGCGATA ............................. CGGTTTTCCGGTTAGGGGTTGTTCCTGTGTTTGGATG 1466856 29 100.0 36 TGTTTGGATG ............................. TAGTAACTCCAGGATCACATACCACGGAATGATTCG 1466921 29 100.0 37 GAATGATTCG ............................. CTCCGTGCTATCTCTGTTTTTGGCCTCCCCTCCCCTG 1466987 29 100.0 38 CCCTCCCCTG ............................. CCCCCCGCCCAATCCGGATCACGAAACTGCACTCGGGA 1467054 29 100.0 38 GCACTCGGGA ............................. CGTGCTCGACAACCTAGCCAAAGCCTACGGGGTAGCGG 1467121 29 100.0 38 GGGGTAGCGG ............................. CTTCATCTTGTCCCCCCTACGGCGTTCTTGAGGTTTAC 1467188 29 100.0 41 TGAGGTTTAC ............................. CGGGCCGCCTGAGGGTAGGCCTCCTCAATGATCTCGTCGAG 1467258 29 100.0 38 TCTCGTCGAG ............................. CTGTTTCAGTTTGTATACCCCCCGGAAAAATGATGAGG 1467325 29 100.0 38 AATGATGAGG ............................. CGACGCGATGCGCCCCAGGAGTTCACCGGCTTTTTCGC 1467392 29 100.0 38 GCTTTTTCGC ............................. CCGGAACGCGCGCGCGACGCCTGAGCCCCGAGGAGCGC 1467459 29 100.0 38 CGAGGAGCGC ............................. CGCTTGGTCTATTTATTCATCCGTGGGGGCCAGGACGA 1467526 29 100.0 37 GCCAGGACGA ............................. CTGCAGAAGACCTGATGGAGCGGCTCGGCCGCCTGAA 1467592 29 100.0 39 GCCGCCTGAA ............................. CAGGAGGTTTGAGGTGGCCCAGGATCTGGAGAAACTCTA 1467660 29 100.0 37 AGAAACTCTA ............................. CCAAACCCAGACGACGGGAGTGGTGCACGTGGAAAAG 1467726 29 100.0 39 CGTGGAAAAG ............................. CGGGGACGTCATCGAGATCCGCAGGGGCGGCAGCTGGAA 1467794 29 100.0 GCAGCTGGAA ............................. CCCATAACATC ========== ====== ====== ====== ========== ============================= 28 29 38 TTTCAAATCCCAGAAGGAACGGTGAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.62%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.50,-4.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [46.7-50.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [74,256] Score: 0.18/0.18 # # Final direction: R [0,0.55 Confidence: HIGH] >NC_015385 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================== ====== 2333605 34 100.0 41 CAGATTTTGT .................................. TGGGCTCTTCCAGAGCTAAAGGTTGTCGTTCTTAACGACGA 2333680 34 100.0 37 TTAACGACGA .................................. TGCATTCCCAACATACAATATCAGTCTCTCAAGAGAC 2333751 34 100.0 44 CTCAAGAGAC .................................. TTGACAAGGCTTTGAAATTTCAAGGTCATGTATCAGACCGGCTG 2333829 34 100.0 39 AGACCGGCTG .................................. TATATTCATAATATAAAGATTTTCGGAGGTAAGAAGATG 2333902 34 100.0 52 TAAGAAGATG .................................. TTTTCAACTTAGAAAGGGGAAAGGTTCCCTTTAGGGTATTATTGGTCTTAAT 2333988 34 73.5 41 TGGTCTTAAT ---------......................... CAAGACCAGTATTGCCTTGGGACTCTTACTCCAGTTCGTGA 2334063 34 100.0 41 CAGTTCGTGA .................................. AAAGAACCGAACCGCAGATTTTTAACTATCTCTGTCTTCAT 2334138 34 100.0 40 CTGTCTTCAT .................................. AGAAAGCAAGAGGCGCAAACTCGACAAGAGATATAAAAAT 2334212 34 100.0 44 ATATAAAAAT .................................. TTGACAAGGCTTTGAAATTTCAAGGTCATGTATCAGACCGGCTG 2334290 34 100.0 39 AGACCGGCTG .................................. TATATTCATAATATAAAGATTTTCGGAGGTAAGAAGATG 2334363 34 100.0 44 TAAGAAGATG .................................. TTTTCAACTTAGAAAGGGGAAAGGTTCCCTTTAGGGTATTATTG 2334441 34 100.0 41 GGTATTATTG .................................. CAAGACCAGTATTGCCTTGGGACTCTTACTCCAGTTCGTGA 2334516 34 100.0 41 CAGTTCGTGA .................................. AAAGAACCGAACCGCAGATTTTTAACTATCTCTGTCTTCAT 2334591 34 100.0 40 CTGTCTTCAT .................................. AGAAAGCAAGAGGCGCAAACTCGACAAGAGATATAAAAAT 2334665 34 100.0 41 ATATAAAAAT .................................. ACAGGAAAATCAACTTTGATTGCTATGCCGCATAAAAGCGG 2334740 34 100.0 40 ATAAAAGCGG .................................. TTTTAGTCGCTCACCGTATAAGTGATTGGGAAAATTTGAT 2334814 34 100.0 41 AAAATTTGAT .................................. TAAAACGACAGGGACATCAAAGGATGAGCTGACAAAAGTAA 2334889 34 100.0 40 ACAAAAGTAA .................................. AAGGTAAAGCGCGCTTTGACCTTGTTGAGCCGGAGTTTGA 2334963 34 100.0 43 CGGAGTTTGA .................................. TCATATCTCTTAATAGAGAGACAAAGCCTGTTGCGGAAAGCAA 2335040 34 100.0 42 CGGAAAGCAA .................................. GCGGGACAAGCCTCATGAATAAGAAGGAGCACGACGCCTACT 2335116 34 100.0 41 GACGCCTACT .................................. TTATGGGAGGCAAGGAGTATAATATGAATGAAAAGTTGAAT 2335191 34 100.0 38 AAAGTTGAAT .................................. TTTGATGAATAAGAAGGAGCATGACGCTTATTTGCAGT 2335263 34 100.0 42 TATTTGCAGT .................................. TGATTATGGCATTCCCAGTATATCAGATTTCTCTTTCAAGAG 2335339 34 100.0 45 CTTTCAAGAG .................................. CTTGTCGTGTTGAATGATAGCAAGAATATACATTTTGTAGATTCG 2335418 34 97.1 45 TGTAGATTCG .................................T CGCCCAGTTCGCGGAGGAAGATGATGGCACTGAATGTGTCTTTCG 2335497 34 100.0 GTGTCTTTCG .................................. CTACCGCTCA ========== ====== ====== ====== ========== ================================== 26 34 41 GTCTTAATCCCTTAAATCAGGTCTATGTTTTTAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.59%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.90,-2.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [70.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [121,15] Score: 0.18/0.18 # # Final direction: F [0.45,0.37 Confidence: LOW] >NC_015387 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2083555 30 100.0 37 GATGTTATGG .............................. ACGCGCTCCGCCAACTCTCCCTGATGCTCCGTGAGGG 2083622 30 100.0 40 TCCGTGAGGG .............................. TACAACACGCAACCCCTGATTTGCAACCCCCACCACAATA 2083692 30 100.0 35 CACCACAATA .............................. CCCCAAACCCCTGGTTTTGCGCTACGAAAAACGCC 2083757 30 100.0 38 GAAAAACGCC .............................. AGGATATCCACAATCGCGTCCTCAGCGCGTTCGGGGTG 2083825 30 100.0 39 GTTCGGGGTG .............................. AAAGAATCAAAAGCGCGAAACCCGGAACCCGCAACAACA 2083894 30 100.0 36 CGCAACAACA .............................. CGCCGTCAACGTAGCGGATGACTGCCCACGCGGGGA 2083960 30 100.0 37 CACGCGGGGA .............................. GCGTGGGAATTAGCGTGGGAAAACCAGGACGGGTTCA 2084027 30 100.0 36 GACGGGTTCA .............................. AAATGAGGTCCCCCCACTGTCGGATCAAAGGGCGGG 2084093 30 100.0 38 AAAGGGCGGG .............................. TCTCGTGGGCTTTGCCAAGGAGAAAAAGGCCGCCTTGG 2084161 30 100.0 34 GCCGCCTTGG .............................. CCTCGAGGCTTACAGTAACCTAGACGGTGTACAA 2084225 30 100.0 36 CGGTGTACAA .............................. TAGTAACAACCTCAAACGCCTTGTTAGCGATGCCTT 2084291 30 100.0 37 GCGATGCCTT .............................. CCCCAACGCAACATTATACACCGTCACTGAAACGCAG 2084358 30 100.0 36 TGAAACGCAG .............................. GCCTCATCCACAATGAATAATAGGTTAGCTCCAGAA 2084424 30 100.0 37 AGCTCCAGAA .............................. CTCGATCCGGCGATCCCCTCGGGGCGGCATGGGCGCC 2084491 30 100.0 35 CATGGGCGCC .............................. GGCGTGGCTGGCCGAGCGCGGCATGGACATAGAGA 2084556 30 100.0 36 GACATAGAGA .............................. TCAAATGGTCCATATTGCGCCGTTCCCGTCCTGGAC 2084622 30 100.0 36 CGTCCTGGAC .............................. CTTTCTAGCCGGACGCAGGCGCGGCGGGTCCTGGAA 2084688 30 100.0 37 GGTCCTGGAA .............................. CTGGAGGGACGCATGGAGCGCATGGAGGAACGAGTGG 2084755 30 100.0 36 GAACGAGTGG .............................. CACTCTAGCCCCCGCTTACCTGAGGAACACCCCCCA 2084821 30 100.0 37 ACACCCCCCA .............................. AAAGAATCAAAAGCGCGAAACCCGGAACCCGCAACAA 2084888 30 100.0 37 CCCGCAACAA .............................. CATGGAGTGGGTAGAACAAAACGACAACCTATCCAAA 2084955 30 100.0 39 CCTATCCAAA .............................. TGGCTTCCGTGGTCATCTTCACTACCTCCCTTACACCTG 2085024 30 100.0 38 CTTACACCTG .............................. TATACCCCCACCCGGTAGGGTGGGGGGTGGGTTAGCGT 2085092 30 100.0 37 GGGTTAGCGT .............................. CCCAGTCCTCTAATTCACGGTAACTAATGACGTGTTC 2085159 30 100.0 38 TGACGTGTTC .............................. AAGCGGCTCCTCAGTTACGAAACCACTCTAGCCCCCGC 2085227 30 100.0 38 TAGCCCCCGC .............................. ACAGGTTCTCCTTCCCTCTGGTACTCACGGATCTTCTC 2085295 30 100.0 35 GGATCTTCTC .............................. CCTCACCGCGAAACTCATCATCCAGGAACTAAAAA 2085360 30 100.0 GAACTAAAAA .............................. GAAGACTCAA ========== ====== ====== ====== ========== ============================== 28 30 36 GTTTTCACCGTTCCTTCTGGGATTTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.20,-1.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [51.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [179,120] Score: 0/0.18 # # Final direction: F [0.64,0 Confidence: HIGH] >NC_015387 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 274044 37 100.0 39 AGCGTATGCC ..................................... CAGGCGCCTACCACGGGCCGGTCCTCGTGGTCTGGGGCA 274120 37 100.0 35 GTCTGGGGCA ..................................... ACGAGGCCGCGAGCCGCCTCCGCATGCAGCTCGAG 274192 37 100.0 35 GCAGCTCGAG ..................................... GGCAAAACCGGGATGGTAGCTACACCCTACCCACC 274264 37 100.0 36 CCTACCCACC ..................................... TCATGAGGGAGGGGGAGAGTAGATGCGGTACGCGCT 274337 37 100.0 35 GGTACGCGCT ..................................... GCGGGGGTCGCGCACCGGGCGGACGCGGGGGACCT 274409 37 100.0 36 CGGGGGACCT ..................................... ATCGAGGGCACCGCGTACACGACCCGACCCATCCGG 274482 37 100.0 36 ACCCATCCGG ..................................... TCGACCCGCAACGGCAACGCCCCGTCGTACGTGATG 274555 37 100.0 34 GTACGTGATG ..................................... ACCAGGACCTGCACCTCCCCCCGTGCGTACGCTT 274626 37 100.0 34 GCGTACGCTT ..................................... GGTAACGCTGTAATGAACTTGGATCTTTACGCGA 274697 37 100.0 34 CTTTACGCGA ..................................... GCGTTAGGTTTGGTTTTGGCGGGGGTCCTCACGG 274768 37 100.0 35 GTCCTCACGG ..................................... CGCTCTAGAATCGATACTGTAAACCTCGTCAATTG 274840 37 100.0 35 TCGTCAATTG ..................................... CTGGATGACCGCGCGGCGCTCACCGCGTTGTGCGG 274912 37 100.0 36 CGTTGTGCGG ..................................... AGGCGTGGGGGGGTGGGGCTTGCGCTGGTGTATCGC 274985 37 100.0 35 GGTGTATCGC ..................................... TTGAGGGCTTCCCACACGCTCATGCCTGGCCTCCC 275057 37 100.0 37 CTGGCCTCCC ..................................... ATCATGCAGCACCCCGACTGGCGTAAGTACCTGGCGT 275131 37 100.0 34 TACCTGGCGT ..................................... GTGCGGGATCGCCTCATGGCCCTCTCCGGGGAGC 275202 37 100.0 35 TCCGGGGAGC ..................................... ATACCCAGTCTAAACTCACGTGACTTGACATACAG 275274 37 100.0 37 TGACATACAG ..................................... GTGTGTTTGTGGGGGAATTCAATCTCCAAGGAGACGG 275348 37 100.0 37 AAGGAGACGG ..................................... CCCGCCGCGTTTGCCACGCGGCCAAACGTCCTGGCGA 275422 37 100.0 36 GTCCTGGCGA ..................................... GCGCTTGGACGGGCGGGGGCCTTGACGGGCAGGGGC 275495 37 100.0 34 GGGCAGGGGC ..................................... ACGGGGTGCCCGCGCACGTGCCCAGCCTGAGCGA 275566 37 100.0 35 GCCTGAGCGA ..................................... CTTGTACCGAGTCCAAGCGTTGATGCTCATGGCAT 275638 37 100.0 36 CTCATGGCAT ..................................... CTGCCGGCTCAGCTGGGGGGCGGCGAAAAGAATTAC 275711 37 100.0 35 AAAGAATTAC ..................................... AAAGCGCACGCCCGCACGCGCGGGTTTCGGAACCG 275783 37 100.0 36 TTCGGAACCG ..................................... TTGTACCGAGTCCAAGCGTTGATGCTCATGGCATAC 275856 37 100.0 36 CATGGCATAC ..................................... GGGAGCCTTGGCACCCGACCTCCTCCCCCACGAAGA 275929 37 100.0 35 CCCACGAAGA ..................................... AGGGCCTGCGCGTCGTACGCCTCCAGCTTGGGTTT 276001 37 100.0 39 GCTTGGGTTT ..................................... GCGCTCAGTCCTTTGCATGCTATACCTCACCTCCACCCT 276077 37 100.0 36 CCTCCACCCT ..................................... CCGGGGCCTTGACGGGCACGGGCGAGCCCCGAGCCC 276150 37 100.0 37 CCCCGAGCCC ..................................... ACGGAGATCGCCCAACAGTACGGTTTGGAGTACGAGT 276224 37 100.0 37 GAGTACGAGT ..................................... GTCCGCCAGGTGCGGCGCGACGCGGTCCAGGACCCAC 276298 37 100.0 35 CAGGACCCAC ..................................... TCGTGTTTGCACCGAGTATAACGTTTTGGGTCCTT 276370 37 100.0 36 TTGGGTCCTT ..................................... CTCAGGCGCGAGCACGGCAGGCCTCCAGCAGCTCGA 276443 37 100.0 36 AGCAGCTCGA ..................................... GGTGAGTCCGCTACCGAGCGGGATGTGCTTGCCTAC 276516 37 100.0 37 GCTTGCCTAC ..................................... ACGGCGCTGCTCGAGGTGCAGGACCGGTTGAACCAGT 276590 37 100.0 36 TTGAACCAGT ..................................... ATCGAGCGGGGGTACCTGTCCCCCATCACGTACTAC 276663 37 100.0 36 CACGTACTAC ..................................... TGCCCCTCGAGCACCATGCGCTGGTAGGCGCGCCAC 276736 37 100.0 34 GGCGCGCCAC ..................................... TCCTTGCGGGGGCGCCGGTACCTCGAGGCGCTCT 276807 37 100.0 34 GAGGCGCTCT ..................................... TGCCATTGCCCGCTGGGGTGGCGTAGGTGCCGGT 276878 37 100.0 36 AGGTGCCGGT ..................................... CGGGGTGTCAACGAGCAGGCGAAGCGGCTTTTTAAG 276951 37 100.0 38 GCTTTTTAAG ..................................... CCTTCCCGTACCTCGTCGGGTACGCCCGCTTGCCCCAC 277026 37 100.0 36 CTTGCCCCAC ..................................... TTCACGCCGTGCGCGTCCTGCACGAGAAGCACGCGG 277099 37 100.0 37 AAGCACGCGG ..................................... GCCCAGCGGCGCAGCGTGGGCTCGCTCACCCCGAGGG 277173 37 100.0 36 ACCCCGAGGG ..................................... TTCACGCCGTGCGCGTCCTGCACGAGAAGCACGCGG 277246 37 100.0 35 AAGCACGCGG ..................................... CCCTAGGTTGCGGTCGGTAAAAAAGACGCTCAAGC 277318 37 100.0 36 ACGCTCAAGC ..................................... AGGGTTGGTGATCGTTTTGAGGTACGCACGTAAGCG 277391 37 100.0 35 CACGTAAGCG ..................................... TCGAGCCGCGCGAGCTCCCCCTCCACCACGTTCAC 277463 37 100.0 CCACGTTCAC ..................................... ACATAGCGCC ========== ====== ====== ====== ========== ===================================== 48 37 35 GTTGCACCGGCCCTTCGGGGCCGGTGAGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [6,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-17.60,-16.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [53.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [182,171] Score: 0/0.18 # # Final direction: F [5.14,0.37 Confidence: HIGH] >NC_015388 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1488840 37 100.0 38 ATAAGGGTGC ..................................... TAATTTATAAAGGCTTCGTAGAATTCTATAGGTCTTTG 1488915 37 100.0 37 TAGGTCTTTG ..................................... GGTTCCGGCTTCACACAGACCAACTACGATCTCTTGC 1488989 37 100.0 37 GATCTCTTGC ..................................... TTGGCAAGATTCCTCACATATCTTTCATCGAAATCGC 1489063 37 100.0 37 TCGAAATCGC ..................................... TCATATAAGATCGAAAGGCTTGTCTTTGTTCCTCAGA 1489137 37 100.0 38 GTTCCTCAGA ..................................... TTCTTTGTGTCGTTCCTTGAACGCTTTAAGATTTTTTA 1489212 37 100.0 38 AGATTTTTTA ..................................... TAAGCGAATTACCCACTCCTGGATTAGCTAAAGATATT 1489287 37 100.0 41 TAAAGATATT ..................................... CTTCCAGCTGGGGCAAGGCCTTCAAAAGATTGTTAATCAAT 1489365 37 100.0 37 GTTAATCAAT ..................................... CCAACTTGCATATGACAGAGGAAAGCTTTTCATCAAT 1489439 37 100.0 38 TTTCATCAAT ..................................... TGTTCCGCTACAGCTCGGCACATGCCCAGGCCATGCTC 1489514 37 100.0 36 GGCCATGCTC ..................................... AGAGGTCCTGCGGGCGCACCACCGTGGCGTTGCCGC 1489587 37 100.0 40 GCGTTGCCGC ..................................... AGCTTCATTACCCATTCAATATCGCCGGCGAGAGCGAAAA 1489664 37 100.0 40 AGAGCGAAAA ..................................... TACAAGACATGTTTGTAACTTCTGATGTATTCAACGTCGC 1489741 37 100.0 37 TCAACGTCGC ..................................... CTAATCGATATCTGAGTCTCCATGTCAAATGCGTTGA 1489815 37 100.0 37 AATGCGTTGA ..................................... CTTGATCAGATTGGAAGAGGCTGTAGAAGGCAACATT 1489889 37 100.0 38 AGGCAACATT ..................................... TCCTGGTCGGCGTTATCCAGTAAGTCAAGGACTTCATC 1489964 37 100.0 39 GGACTTCATC ..................................... TATTACAGCGGTCGCGGTATCTGTGAAGGCTGTGGTTTC 1490040 37 94.6 CTGTGGTTTC ...................C......G.......... CCGTAGGGGCGGGGTTACCCCGCCCCTACGCCGG ========== ====== ====== ====== ========== ===================================== 17 37 38 CTTACAACGATAAGAAGAGTCTTCGGACGATTGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.05%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [53.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [415,446] Score: 0/0.18 # # Final direction: F [1.05,0 Confidence: HIGH] >NC_015387 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 961159 28 100.0 33 CGGGACTTCC ............................ GCTTGCCCGCGCGCGTGAGGTTGAGGCTATCGA 961220 28 100.0 33 AGGCTATCGA ............................ GAACCCAGTTCCGCTCATCAAGCGCACTGAGGT 961281 28 100.0 33 GCACTGAGGT ............................ TTGCTCCACAGGCCGAGCAGCGTGCGGGATTGC 961342 28 100.0 33 GCGGGATTGC ............................ GAGGGTGCCGCTTACCTACAAGAGCGTCAAGGT 961403 28 100.0 33 GCGTCAAGGT ............................ GTTTAGTCTCGAGCTCGCTGCTCCGCGCCTCAG 961464 28 100.0 33 CGCGCCTCAG ............................ GCACAACGTAACGCCCGGAATGTGCCTGAGGGG 961525 28 100.0 33 GCCTGAGGGG ............................ GCTGGAGCGCCATTGCCTCGCCGATGCGGGGGC 961586 28 100.0 33 ATGCGGGGGC ............................ GGGACATAACCCTAACCTCACGCCCGAGAGCCC 961647 28 100.0 33 CCGAGAGCCC ............................ GGGTAGCCCGGTACTCATGCCATGCTTTTTGAA 961708 28 100.0 33 GCTTTTTGAA ............................ GATCTTCCCCAAGTAACGCGGATGAGGTACCCC 961769 28 100.0 33 GAGGTACCCC ............................ GTAACGCGTGAAGTACTTGACGCGCTTTAGTCC 961830 28 100.0 33 GCTTTAGTCC ............................ GCATACAATAAATCCGCATACGCACTTATTCCG 961891 28 100.0 33 ACTTATTCCG ............................ AGAGTATCCGCAAGCACGTCAAAAGCAAAAGAG 961952 28 100.0 33 AGCAAAAGAG ............................ GACCTCACCCCGCTAGAGATTCAGTCCTGGGCC 962013 28 100.0 33 GTCCTGGGCC ............................ AAGTGGGAGGAAGCCAAAGCCACCAGGGCCGTT 962074 28 100.0 33 CAGGGCCGTT ............................ GCCCTCCTGGACTGGTTACGGCAGGACCCGCCC 962135 28 100.0 33 GGACCCGCCC ............................ GTCTGCGGAGTCAGAGCCGATGGCCCGGGCCAT 962196 28 100.0 34 CCCGGGCCAT ............................ GAACGCCTTGAGCACCACGCCGAACGCGTCCGTA 962258 28 100.0 33 CGCGTCCGTA ............................ GACGTGAACGATCTGCTCAGCGCGTGGGCGCTC 962319 28 100.0 33 GTGGGCGCTC ............................ GGGATCGAAATGGACAAGGCCGGATGGGCGATA 962380 28 100.0 33 ATGGGCGATA ............................ GGTCCAGATAGGCGAGGTACCTGTGTTCCCCGT 962441 28 100.0 33 TGTTCCCCGT ............................ GGAATACCATACACGGGCGATGAAATAAACCGC 962502 28 100.0 33 AATAAACCGC ............................ GTCTACGAATTATTATGCGAAGAACTTCCGCCC 962563 28 100.0 33 ACTTCCGCCC ............................ GTTGAGGGGTTGTAGGCCCAGGTTGCGTATTGA 962624 28 100.0 33 TGCGTATTGA ............................ GCTGGGAGCCGTCAGCGGGCTCTCCATCGGTTA 962685 28 100.0 33 CCATCGGTTA ............................ GCCCCTGCGGGAGGTCACGGTACGTGTGCGCTC 962746 28 100.0 33 GTGTGCGCTC ............................ AGCCGTCCGTGCGTTCCTCATCCGCGAACTCCA 962807 28 100.0 33 GCGAACTCCA ............................ GTACCGGAATGGCCGCTTAATGTCCGGGTTTTC 962868 28 100.0 33 CCGGGTTTTC ............................ GAAAAAAGTCGTGAGCACGCCCGTCACGGGCAG 962929 28 100.0 33 TCACGGGCAG ............................ GTTCGCCACGCCGCGCACCATGCGCCGCGGGGC 962990 28 100.0 33 GCCGCGGGGC ............................ GGATAATCTGCTACAATTCTACGCCATGAATAC 963051 28 100.0 33 CCATGAATAC ............................ GATGCTGAATGGGCATATACACGCGGTTTTGAC 963112 28 100.0 CGGTTTTGAC ............................ GTCCGCCAGGC ========== ====== ====== ====== ========== ============================ 33 28 33 GTAGTCCCCACGCACGTGGGGATGGACC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [36.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1525,106] Score: 0.18/0.18 # # Final direction: F [0.82,0 Confidence: HIGH] >NC_015388 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3066547 37 100.0 41 TGGCTTTATC ..................................... TATGGGCCGTGGAAAACGTCAATTTGATTGAGAAAATCCTG 3066625 37 100.0 39 GAAAATCCTG ..................................... CGGTCTCTTGTTCCTCGGGTAGTGCCGGGATTTGGTCTT 3066701 37 100.0 41 ATTTGGTCTT ..................................... TCACATATTCACAGGGATTTCAATGCAGCCTTGATCTCGGC 3066779 37 100.0 44 TGATCTCGGC ..................................... GAAAGCCAAAGCTGCTGCTGAGGGGATCAGCTACGAAGAGCTGA 3066860 37 100.0 40 GAAGAGCTGA ..................................... AGAGAGCAAGTGGAAACTGCGCTTCGGAATAGAGCCAAAG 3066937 37 100.0 36 AGAGCCAAAG ..................................... ACCATTTGGGGGCTAGAGTCCCTGGAGGCCACTGGC 3067010 37 100.0 GGCCACTGGC ..................................... AGCAGGTTTT ========== ====== ====== ====== ========== ===================================== 7 37 40 GTCGCAATCCCTTCGTAATCAGGTCAATGAAGCAGAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:51.35%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-3.00,-2.80] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [2281,520] Score: 0.18/0.18 # # Final direction: F [0.18,0 Confidence: MEDIUM] >NC_015388 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1934754 36 100.0 38 AGGGGGTGCT .................................... CAACGCCTCCATGGCCTCGGCCACGCTGTTGATCAGCC 1934828 36 100.0 38 TTGATCAGCC .................................... TAAACACAAACATCTATGCCTTTTACTCGCCTGGTTGG 1934902 36 100.0 40 GCCTGGTTGG .................................... CTTATGAAGAGTCTCCCTGATGGCCGCCGGGTCGAGCCTT 1934978 36 100.0 32 GTCGAGCCTT .................................... TTAGGCAGGATAGTAAACTCTGGAGCATTGTT 1935046 36 100.0 36 GAGCATTGTT .................................... TTTTCCTCAACGCAAATTACCGCAGGGAGAGCAATT 1935118 36 100.0 37 GAGAGCAATT .................................... TGTTCTCCAAGAATCTTTCTTTTATCAAGATAAAAGA 1935191 36 100.0 41 AGATAAAAGA .................................... GTTTTTTCATTTTCTTTGTTCTTTGCTCCGGCCCGGGATCA 1935268 36 100.0 35 CCCGGGATCA .................................... GCTAAAGCGGTCGCCGGAGACGTGGTAGAGCTACA 1935339 36 100.0 36 TAGAGCTACA .................................... ATCAGGCTCTGCACTTTTACAATTTCTCATTTTATT 1935411 36 100.0 38 TCATTTTATT .................................... ATAGTTGCTATCATCTATTAACGTTACTTTCATTTTCC 1935485 36 100.0 38 TTCATTTTCC .................................... TCATATCCCCAACTAAGAGATTTTTGATGCCCGTAAAT 1935559 36 100.0 38 GCCCGTAAAT .................................... GTAATAGTTGCCAACTTTTCCATTTGTTTCTCCTTTCA 1935633 36 100.0 37 TCTCCTTTCA .................................... ATTATCCATACGTATTTGTAGTCATTATAATCCTTCT 1935706 36 100.0 39 TAATCCTTCT .................................... CTTCTGGCTCTCACTTTGCACTCATTTTCGAGTAGCAAG 1935781 36 100.0 GAGTAGCAAG .................................... GATAAAGCCA ========== ====== ====== ====== ========== ==================================== 15 36 37 CTCAGAAACATTGACCTGATTAGAAGGGATTGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.30,-0.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [50.0-51.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [243,63] Score: 0.18/0.18 # # Final direction: F [0.55,0 Confidence: HIGH] >NC_015388 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 87673 37 97.3 35 GATTTTCATT ...............................T..... CCCCTGCTGGGTCCAGCCTGGTGTTGCTTTGGCCA 87745 37 97.3 36 GCTTTGGCCA ...............................T..... AAGAGCCAAGTTCTTGGGTGATGTGGAGGAATAAGA 87818 37 97.3 36 AGGAATAAGA ...............................T..... TCTAACCGATTCACGTTATCGATCATACAACAAATT 87891 37 97.3 36 ACAACAAATT ...............................T..... AACTCTATCAGGCTCGTGCTATCACAAGTCGATAAA 87964 37 97.3 37 AGTCGATAAA ...............................T..... CCTGCTCGTGCTCGCACGGCATGATCAGGTCCCAGGT 88038 37 97.3 36 GGTCCCAGGT ...............................T..... GCGGGTGGACGCCGGGCACGGCCTCGGCCTGACATA 88111 37 100.0 37 GCCTGACATA ..................................... TCAGCATGCGAATGGCAGTTGTTTGAAGGTAAATTTA 88185 37 100.0 37 GGTAAATTTA ..................................... GCGTGCAGCCGGAAGGGGTGTCGCTGGTCGATTATAT 88259 37 100.0 36 TCGATTATAT ..................................... TCCAGTCCCAGGTTGTAATTATAGAACCAATTATGT 88332 37 100.0 37 CCAATTATGT ..................................... TCTTAATTCATGAGACGGGGGATTTTTCTATTTTGAA 88406 37 100.0 37 CTATTTTGAA ..................................... TCAATTTGTCAAGGAGGAGTTTGAACGGTCAATATGG 88480 37 100.0 36 GTCAATATGG ..................................... AGGGCTAATCTGCTGGGATATCGGGAGTCCAAGGGC 88553 37 100.0 34 GTCCAAGGGC ..................................... AATTTGGAATAGGTCCCTGCGGACCTGAAGGAGG 88624 37 100.0 35 CTGAAGGAGG ..................................... TCGTGAGAGTTATCAATACCTAACTTTATAGTAAT 88696 37 100.0 37 TTATAGTAAT ..................................... TCTCCAGCCTTAAGGGCATGGTCGAAGGCCTAATCGT 88770 37 100.0 35 GCCTAATCGT ..................................... CAAGGATCGGCCCTCGATGGCCTTGACCTCTCTAT 88842 37 100.0 36 ACCTCTCTAT ..................................... CATGTTGGCTGCGGTCGGCGGAGTTTATAGCGCGTA 88915 37 100.0 36 ATAGCGCGTA ..................................... TGGCGGCCATTACAGCCGGATCAAATCCCATATAAA 88988 37 100.0 36 CCCATATAAA ..................................... TGGCGGCCATTACAGCCGGATCAAATCCCATATAAA 89061 37 100.0 35 CCCATATAAA ..................................... CAGGCCATGGTTGAATACCGCCCGGTCGGTGGGAT 89133 37 100.0 35 TCGGTGGGAT ..................................... CCAGAAGCGTCATGGCATGGGTAATGGCTTGCTTG 89205 37 100.0 36 GGCTTGCTTG ..................................... CCCGCTTCCGATCTTTTCCCTTGCCTTGCCCATCAA 89278 37 100.0 36 TGCCCATCAA ..................................... TGGCTTATAACCTCGGGATTACTGGAGTCACAATAA 89351 37 100.0 39 GTCACAATAA ..................................... TCCTTCTACCAACATAGTCAGTGAGGGAACGCAACTCGA 89427 37 100.0 37 CGCAACTCGA ..................................... ACCACGGCCTCTGCGCCAGGGGCACTGGCATAGCTCT 89501 37 100.0 36 GCATAGCTCT ..................................... TCCTGAGTTCCCCTGCCACTGATCCGGTAGATGAAA 89574 37 100.0 37 GTAGATGAAA ..................................... AAGGAAGCTTTCAGACAGGCCGGGGATATGTTACATA 89648 37 100.0 36 ATGTTACATA ..................................... AAAGGTTTGGGGCGAGGGGGTATATGCTTCACTCGA 89721 37 100.0 37 CTTCACTCGA ..................................... TCGATTCCTATTTCAATTAGATTGTCCCTCAGTATTT 89795 37 100.0 36 CTCAGTATTT ..................................... CCCTAGATTCCGGGCCAGGGAACGACCCCGTATTGA 89868 37 100.0 36 CCCGTATTGA ..................................... CATGAATGCCCCACTCCAGGCCACTGGGCGTGATTC 89941 37 100.0 36 GGCGTGATTC ..................................... TTTTCTGGCTCTTGCGATGCTTGGCCATTCTTGCAT 90014 37 100.0 34 ATTCTTGCAT ..................................... GCAATTTCCATTCATATGGACGAGCCTGATAAAT 90085 37 100.0 36 CCTGATAAAT ..................................... CTATGGATTACGGCCATGGAACGTCAAGAATCGCGT 90158 37 100.0 35 AGAATCGCGT ..................................... GCCGCAAGCAGGCAAGGGCCATGGAAATGAAAAAT 90230 37 100.0 36 AATGAAAAAT ..................................... CCACTATCGCATGATGTGCATATTGCGCATCACGGA 90303 37 100.0 37 GCATCACGGA ..................................... GCTGGGATCGTGGTTAGCAAGAAGGGAACCTATCCAA 90377 37 100.0 36 ACCTATCCAA ..................................... GCCAAATAGGACTCATCCTCCTCAACTGCCAAATTA 90450 37 97.3 36 TGCCAAATTA ..................T.................. ATTGCTATTCATGTCAGAAATTTGATGAGGAATTCA 90523 37 100.0 35 GAGGAATTCA ..................................... TTCCATTGGCAGACTAGTCCGCCGGACACGAAGAA 90595 37 100.0 36 ACACGAAGAA ..................................... TCAAGGATCGGCCCTCGATGGCCTTGACCTCTTTAT 90668 37 100.0 35 ACCTCTTTAT ..................................... CTTGGATACAGTTTTTCCGGAGACAGGGACATCTA 90740 37 100.0 36 GGGACATCTA ..................................... AGTCTGGTCCATGCTCCTTCTCACTTCTATCGCGGC 90813 37 100.0 35 CTATCGCGGC ..................................... CCAGAAGCGTCATGGCATGGGTAATGGCTTGCTTG 90885 37 100.0 36 GGCTTGCTTG ..................................... AATTCCCAGTTGAGATCAGCCAACGAGGAGCATATG 90958 37 100.0 36 GGAGCATATG ..................................... TGCGGGTTAATTGCACTGGCTTGCGGCTCTGGAAGA 91031 37 100.0 37 CTCTGGAAGA ..................................... TTCCCCAGGCAGGGGGAACTGTTCTCCTCCAGCATAA 91105 37 100.0 36 TCCAGCATAA ..................................... TGGGGAAATTCTTCGCCCTAAACCGGGTGAAGCGGT 91178 37 100.0 36 GTGAAGCGGT ..................................... CTTGACAGCAGTGTCCCCGGCTCTAGCCCGGCAGAT 91251 37 100.0 35 CCCGGCAGAT ..................................... CTGGGTCCAGTCGTGGATGCCAACCCTGGCTATCA 91323 37 100.0 36 CTGGCTATCA ..................................... GGGAAATCAGGGAGACGGTGCCCCATGCTACCGTCA 91396 37 100.0 36 GCTACCGTCA ..................................... CTTGACAGCAGTGTCCCCGGCTCTAGCCCGGCAGAT 91469 37 100.0 36 CCCGGCAGAT ..................................... GGTATTGGAGTTGGCAGCGCCCTGGCCAATTTACGG 91542 37 100.0 37 CAATTTACGG ..................................... AGGAATCTCCGTCCTTTAGGGCGGAGAGGATGTCAAG 91616 37 100.0 37 GGATGTCAAG ..................................... AGTGTGGCTGAAGCATCAGGATATATTTCAGCAATAA 91690 37 100.0 37 TCAGCAATAA ..................................... CGAGTGAAATTGGATGATGCGGTTGGGGTCATCCAAA 91764 37 100.0 35 GTCATCCAAA ..................................... GCTGGCTCAGGCATTGGGTATAGCCTGGGAAAAAG 91836 37 100.0 36 TGGGAAAAAG ..................................... CTGTATCGGAAGGAGCATTAGAATCAACTCAGGGAA 91909 37 100.0 35 ACTCAGGGAA ..................................... TTGATCTAAGATTCCTAATACGGATTCATGAAGAT 91981 37 100.0 37 TCATGAAGAT ..................................... TTCATAATTTTTCTCCTGTTGATTTTTAGCTCGGGGC 92055 37 100.0 35 AGCTCGGGGC ..................................... GGAAAGGCCGGTTGCCGATATTGGAGTATAAAGAG 92127 37 100.0 35 GTATAAAGAG ..................................... GCGGGCTGGTATGGGCCTTTCTCCCCCCCCTGGGA 92199 37 100.0 37 CCCCCTGGGA ..................................... GGAAGAACGTGAAAAGCTTAGAACTGTATAACTTTGT 92273 37 100.0 37 ATAACTTTGT ..................................... ATGGACCATTTGAATCTCAAGGTTCGTGTAATCCGTA 92347 37 100.0 36 GTAATCCGTA ..................................... GCGTCTGGAAGTTTCGCACCACTTCGTGGAACTCGG 92420 37 100.0 35 TGGAACTCGG ..................................... TTTTTAGGCTTGTGAGCCTCCTTTTATAATTTGTT 92492 37 100.0 36 ATAATTTGTT ..................................... CCAGGGTTTCTGCCCTATCCATGGGAACTTATTAAC 92565 37 100.0 36 ACTTATTAAC ..................................... ATCAACTGCAGATGTTGTGCGGCCCCCATAGTCAAA 92638 37 100.0 35 CATAGTCAAA ..................................... CTTCCGCCAGAGTTATCCCCCAAGTCGGTAAGCAA 92710 37 100.0 35 CGGTAAGCAA ..................................... CTGGGCGGCCCTGGCGGTCTCCGGGCCCGCCTTCA 92782 37 100.0 35 CCCGCCTTCA ..................................... ATAGACGCCGCAGCCCGGTTCGTCATCCCTATAAG 92854 37 100.0 36 TCCCTATAAG ..................................... GGATTTAGGGGAAGTTTTCTTATTAATAGCCGTAGA 92927 37 100.0 35 TAGCCGTAGA ..................................... ACGAAAGTTTTTTCCGGCGACGCTTGGATAATCTT 92999 37 100.0 36 GGATAATCTT ..................................... CCGAAGGTATATGCTCAACCTCCGGCAGCCATTGAT 93072 37 100.0 36 AGCCATTGAT ..................................... CCCTTCCAGGTCTCTTCTATGGGTTCGTCGCCAACA 93145 37 100.0 36 GTCGCCAACA ..................................... TCTTTTCGTATTCCCCAGAGAGATAAGGCTGAAGGA 93218 37 100.0 37 GGCTGAAGGA ..................................... TTGGCAGCCGCAATGGCCCCTGACGGAGATTTGGTAT 93292 37 100.0 34 GATTTGGTAT ..................................... TTTACGCTTGGCGGAGATGGCGTCCTCGACCGAA 93363 37 100.0 36 CTCGACCGAA ..................................... CCTGCGGCTTAAAAACAAGCGGCCTGAAGTTTGATA 93436 37 100.0 36 AAGTTTGATA ..................................... GCGTCATTATCCGCCTCAAAGAAGGTGATAGTCGGA 93509 37 100.0 36 GATAGTCGGA ..................................... CTGTTGGGGTATTCAACGCCGCCGACGACACCTTGA 93582 37 100.0 36 GACACCTTGA ..................................... CCGGTCGGTCCCAGGCGAAGATTTCCTCCAGGCGTT 93655 37 100.0 35 TCCAGGCGTT ..................................... TCATCGCCTGCGAAAGCCGCCGCAGTTTCTTTGAG 93727 37 100.0 36 TTTCTTTGAG ..................................... TGGCGACTACCTCTACCTGGGCAAGCTGACACAATT 93800 37 100.0 36 TGACACAATT ..................................... TGGAATATCTCCGGCGGGAGGATTATCTCCGTAATT 93873 37 100.0 36 CTCCGTAATT ..................................... GCGTCATTATCCGCCTCAAAGAAGGTGATAGTCGGA 93946 37 100.0 36 GATAGTCGGA ..................................... AAAACCAGGAATGGTTTGACAAACGATGGAAATACT 94019 37 100.0 37 TGGAAATACT ..................................... TTTTTTTTATTACATTTGTCATTCCCCTCCCACTTAT 94093 37 100.0 37 TCCCACTTAT ..................................... GCTGTTGGGGTATTCAACGCCGCCGACGACACCTTGA 94167 37 100.0 GACACCTTGA ..................................... CCGCTTTCTG ========== ====== ====== ====== ========== ===================================== 90 37 35 GTTTCAATCCTTGTTTTAGTGGATGTATCGCCAAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.16%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.70,-2.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [29,155] Score: 0.18/0.18 # # Final direction: R [0.64,5.09 Confidence: HIGH] >NC_015389 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2042245 36 100.0 29 TAGCTGGCTG .................................... TACCGAGCATGGGAGAGGAAGGGTATGGA 2042310 36 100.0 30 AGGGTATGGA .................................... CCCAAGGCAGTGCTGGTGCGGGCATCGTCG 2042376 36 100.0 29 GGCATCGTCG .................................... GGAAAACCACCGTGCAAATGGACGCATTT 2042441 36 97.2 30 GGACGCATTT ..............C..................... GATGGAGACCAAGATCGACCAGCAGGCCGG 2042507 36 100.0 30 AGCAGGCCGG .................................... TGCATGGAGCCCTGAGGAGGATGACAGCTA 2042573 36 97.2 29 ATGACAGCTA ................................T... CTTATTCTTACCGGCTCACCCCTCAACGG 2042638 36 100.0 30 CCCTCAACGG .................................... GGAGAAAATGGAGAGGAAGCGTTATTGGCT 2042704 36 100.0 GTTATTGGCT .................................... CACAAATAAGGATGACAGCGCAACGGTGCG ========== ====== ====== ====== ========== ==================================== 8 36 29 GTTTTGGAGCAGTGTCGTTCTGACTGGTAATCCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.80,-1.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [53.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [124,489] Score: 0.18/0.18 # # Final direction: F [1.05,0.18 Confidence: HIGH] >NC_015389 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 496094 28 100.0 34 NNNNNNNNNN ............................ CAGCAATTGGTCAGATGATCATTACGATGATGAT 496156 28 100.0 34 NNNNNNNNNN ............................ CCCCGACGGCTCATCGGCAGAGACCATCTCTCGC 496218 28 100.0 34 NNNNNNNNNN ............................ TGGTACGACACGCATCCCACGACATCCGCCACGG 496280 28 100.0 34 NNNNNNNNNN ............................ CCCGGACTGACACCGACGTGTCCGCAGGTGAGCC 496342 28 100.0 34 NNNNNNNNNN ............................ CACTTCGGAGTCACCACCGAGGCCGCGCAGGAGA 496404 28 100.0 34 NNNNNNNNNN ............................ CATATCGGTGCGCGCCGGCGACGACGCGCTCAAG 496466 28 100.0 34 NNNNNNNNNN ............................ TGTGTTGGCCCGCAGTCGCTTGGCCTTCTCGATC 496528 28 100.0 34 NNNNNNNNNN ............................ CGCCAAGGACCTAAAGGCGCTCGACCAGATTGAC 496590 28 100.0 34 NNNNNNNNNN ......T..................... CCTTTGAGGCAGACGCGCGTTTAGAAGAGCCCTT 496652 28 100.0 33 NNNNNNNNNN ............................ CTCCAACGGAGAGTACCATTCGAGCTGCGTCGA 496713 28 100.0 34 NNNNNNNNNN .........A.................. TATCAATATATACGGCACTGCTGGGAACGGGATA 496775 28 100.0 34 NNNNNNNNNN .....T...................... GGTCGCGTTGCCCTGCGTGGCCGACATGGCCCAG 496837 28 100.0 34 NNNNNNNNNN ............................ CTCGACGAGTGGGCTGCGCCTGTCGAAGTACATC 496899 28 100.0 34 NNNNNNNNNN ...........ATG.............. CGACAGGATCGCGACCACCGCCAGTGTTGTCAGC 496961 28 100.0 1 NNNNNNNNNN ...........A................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 15 28 33 GTGCTCCCCGCGCATGCGGGGATGATCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [82,483] Score: 0.18/0.18 # # Final direction: F [0.68,0.55 Confidence: LOW] >NC_015416 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2747357 37 100.0 40 GCTCATGGGC ..................................... ATGGAAACGTCTTTGAACAAATGGCAAAGGAAGTTGCCAC 2747434 37 100.0 35 AAGTTGCCAC ..................................... GTTCACTTTGTAATGCCACGGGCTGTACGCATTTC 2747506 37 100.0 36 TACGCATTTC ..................................... AGAAGCCCCACAAGCAGAGCCACCGGGAAGAATGCA 2747579 37 100.0 33 GAAGAATGCA ..................................... CCAGTTGGGCAAACCGAACAGCATCTTTGAGCA 2747649 37 100.0 37 TCTTTGAGCA ..................................... TCTGAGGAAATCGCGATGGAGTTTGCTAAACGATGGA 2747723 37 100.0 38 AAACGATGGA ..................................... GCTGGGGTCGATTGCGGGCAAAATCAAAGGCGGTGGCA 2747798 37 100.0 37 GGCGGTGGCA ..................................... ATCAAGGAGGTTGCGTAGATGGGACTCGACGTGTATC 2747872 37 100.0 37 GACGTGTATC ..................................... TCCCGATGAAACCAGCCACTCGAAACCCGAATTTCTA 2747946 37 100.0 CGAATTTCTA ..................................... GACGGGCATC ========== ====== ====== ====== ========== ===================================== 9 37 36 GTTTCAATCCTTGTTTTCGTGGAACTTGCTCTTGATG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:59.46%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.50,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [233,81] Score: 0.18/0.18 # # Final direction: R [0.55,4.5 Confidence: HIGH] >NC_015416 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2749613 37 100.0 36 GCTCATGGGC ..................................... TCCCATCTATGTCTCGGGGGATGATGCTCTGACCGT 2749686 37 100.0 37 CTCTGACCGT ..................................... GATCGGGGAACATCGAAGAAGCAACCACGGCGTGGGA 2749760 37 100.0 36 CGGCGTGGGA ..................................... AGGCAACAAATACGATGCTGTAGAGCTTGGCCCTTA 2749833 37 100.0 40 TTGGCCCTTA ..................................... ATGGAAACGTCTTTGAACAAATGGCAAAGGAAGTTGCCAC 2749910 37 100.0 35 AAGTTGCCAC ..................................... GTTCACTTTGTAATGCCACGGGCTGTACGCATTTC 2749982 37 100.0 36 TACGCATTTC ..................................... AGAAGCCCCACAAGCAGAGCCACCGGGAAGAATGCA 2750055 37 100.0 36 GAAGAATGCA ..................................... TGAATGTCATGGAATCGACTGGGGTGGACGAATTTC 2750128 37 100.0 34 GACGAATTTC ..................................... TCCTAGAGGAGTCTGGGACGTTTTTCTATGCGGT 2750199 37 100.0 38 TCTATGCGGT ..................................... TGTCACCTTCTAATTATGACCACCGCGTCAACTGCAGA 2750274 37 100.0 39 CAACTGCAGA ..................................... TTGAGATCAGGGCAGCGGACAGAGCGATGGTGTCCTTGA 2750350 37 100.0 37 GTGTCCTTGA ..................................... TTTTCAACAAAATGTCAGAAGGAAGTTGCATGATGGC 2750424 37 100.0 GCATGATGGC ..................................... AGCGGCTTTT ========== ====== ====== ====== ========== ===================================== 12 37 36 GTTTCAATCCTTGTTTTCGTGGAACTTGCTCTTGATG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:59.46%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.50,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [45.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [233,161] Score: 0/0.18 # # Final direction: R [0.37,4.77 Confidence: HIGH] >NC_015416 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2851895 37 100.0 39 ATAATGCTTG ..................................... TCGAAAATATCCCAATCGAGATGTGGAACGGCACCGAAT 2851971 37 100.0 38 GGCACCGAAT ..................................... GAAGCGGAAGGTATCACCATTGGAGAAATCCAAGCGGG 2852046 37 100.0 40 TCCAAGCGGG ..................................... ACACAGAATATGCTGGCGGGGGCCTGGGTCACACTCACAC 2852123 37 100.0 38 ACACTCACAC ..................................... AGCTGATCAACGATTCTGCCAGCCAGGGCTTCAAAAAG 2852198 37 100.0 36 CTTCAAAAAG ..................................... CGGCTCATACGGCATGGATGCCCTAACCAAGATGGT 2852271 37 100.0 38 CCAAGATGGT ..................................... CATATCATCAATCCTGAATTAGTATTATGCCCGCCCGG 2852346 37 100.0 41 GCCCGCCCGG ..................................... GCTCTGGCCGCACCCCGGACAATGGCCAAGAAGATGGCGGT 2852424 37 100.0 40 AGATGGCGGT ..................................... GTGGCTGCAGATCGTATATCTGATCATCTCAGAATAATGA 2852501 37 100.0 38 AGAATAATGA ..................................... ATCATGCATCTCTATGCGGGCCGTTCGGAGATCCTCGT 2852576 37 100.0 40 AGATCCTCGT ..................................... ATATTCCCTCGGTACATCTCATACCTTGCGGACGCTCCAA 2852653 37 100.0 40 GACGCTCCAA ..................................... CGGGAACCAATAGTTCTTGGCGTCCTGGCAAATGCCGTCA 2852730 37 100.0 39 AATGCCGTCA ..................................... GAAGACCTACTATCAACATTAGATACAGAAATTACAAGA 2852806 37 100.0 AATTACAAGA ..................................... ATATTTGGAA ========== ====== ====== ====== ========== ===================================== 13 37 38 GTTTCAATTCCCTTTTCATCGGGATAGGCTCTGCAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.90,-6.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [61.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [106,101] Score: 0/0.18 # # Final direction: R [0.27,4.87 Confidence: HIGH] >NC_015416 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2854178 37 100.0 38 TGCAGTCCAC ..................................... GGAATCCGGCCTTTGGTGGTCCGGCAAAGTGCGAACGC 2854253 37 100.0 38 GTGCGAACGC ..................................... ATATAGACGAACTCCAGGATTTTGCTAACCAGGCATCG 2854328 37 100.0 36 CCAGGCATCG ..................................... ATCTGGGTAGGTGGTGGCGGCACTGAGGATGATTAC 2854401 37 100.0 39 GGATGATTAC ..................................... CTCCAAAATCATGAATTACCATTACATGAATTATATTAT 2854477 37 100.0 40 ATTATATTAT ..................................... TTCCGCAGCTGGCCTGGAGGCTTACCAAGCCATTCTTCCT 2854554 37 100.0 39 CATTCTTCCT ..................................... CGGCGGGATAACTAGTCGATCCCAGGCCGGAAGTGTTCC 2854630 37 100.0 38 GAAGTGTTCC ..................................... CCCAACGGCTTGAGCATTCCAGCAAGTCCGCTAGCTGG 2854705 37 100.0 37 CGCTAGCTGG ..................................... TTTCGAAGACATCCCGCGAAACATCTCTGAGAACATT 2854779 37 100.0 39 TGAGAACATT ..................................... GCACGATAGCGACAAGGTGACCGACAGAACGACCGCCCA 2854855 37 100.0 39 CGACCGCCCA ..................................... GTATAAAGTGGCTGAGAAGTATTACGAGCCTGCCAAATA 2854931 37 100.0 38 CTGCCAAATA ..................................... AAAGGAATCCAGTTCGGTGCGTGGATCGCTGTCATCAC 2855006 37 100.0 40 CTGTCATCAC ..................................... GTATCGAGCAGCTCCCTCTAGATACTGATCGGCTGGCATA 2855083 37 100.0 40 GGCTGGCATA ..................................... TTGGTCTGGACGAGGATCGTTCCATTGGTTTGAAGGAATC 2855160 37 100.0 37 TGAAGGAATC ..................................... GGGTACAGGTATGACCTGGGGCATGGACGATCGTGAT 2855234 37 100.0 38 CGATCGTGAT ..................................... CATACCGCCGGGGGCTTCTCTTTATGCCCCGGATGTGT 2855309 37 100.0 38 CCGGATGTGT ..................................... AGCTGATCAACGATTCTGCCAGCCAGGGCTTCAAAAAG 2855384 37 100.0 36 CTTCAAAAAG ..................................... CGGCTCATACGGCATGGATGCCCTAACCAAGATGGT 2855457 37 100.0 CCAAGATGGT ..................................... CATATCATCA ========== ====== ====== ====== ========== ===================================== 18 37 38 GTTTCAATTCCCTTTTCATCGGGATAGGCTCTGCAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.90,-6.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [33,178] Score: 0.18/0.18 # # Final direction: R [0,5.32 Confidence: HIGH] >NC_015416 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2856874 37 100.0 41 NNNNNNNNNN ..................................... GCTCTGGCCGCACCCCGGACAATGGCCAAGAAGATGGCGGT 2856952 37 100.0 40 NNNNNNNNNN ..................................... GTGGCTGCAGATCGTATATCTGATCATCTCAGAATAATGA 2857029 37 100.0 37 NNNNNNNNNN ..................................... CGAACTAAAAAAGGATCTTACAAAACAATATTATTTT 2857103 37 100.0 36 NNNNNNNNNN ..................................... ACCAAAACAAGAATACGTTGTTTTTTCACATATTTC 2857176 37 100.0 36 NNNNNNNNNN ..................................... GTAAAGCGATTTAACAACGTAGTATGATAAACTCTT 2857249 37 100.0 38 NNNNNNNNNN ..................................... TAGAGGTCTTGTTAAAGGCATGGTAGAGCCTGGTAACA 2857324 37 100.0 36 NNNNNNNNNN ..................................... GAAGGATCTCTTTGAGGGGCTATTGCCAAGATTCTC 2857397 37 100.0 40 NNNNNNNNNN ..................................... GCGGCTCAGACAGGATTCACCTCAAGCAACAGCTGGACAT 2857474 37 100.0 35 NNNNNNNNNN ..................................... TAGATGAGTCATTGAGCTTAGGCAGAGAGGACTTC 2857546 37 100.0 40 NNNNNNNNNN ..................................... GATACAATAAAACAGACTCGAGACCTGCCCGGACTTAGAT 2857623 37 100.0 31 NNNNNNNNNN ..................................... AAGCCCCTGCGATCCAGGAAGTCGCATCTTG 2857691 37 100.0 39 NNNNNNNNNN ..................................... ATGAAATACCTGTGTTTCCACTAGTTGGTTCTATGAAAA 2857767 37 100.0 39 NNNNNNNNNN ..................................... CGAAACGGTATGTGTATGTGTATCCGAACCACTTTTTGT 2857843 37 100.0 37 NNNNNNNNNN ..................................... CCTCGTTTGCGCGATCTGACCACCAGCCAGGAACTCA 2857917 37 100.0 39 NNNNNNNNNN ..................................... ATTTTGTCATAGTACATCACCATGTAAGCCCGTCCCCAT 2857993 37 100.0 36 NNNNNNNNNN ..................................... TGATGAAATGGATGAGTACCTGAACAGCTTGATGGA 2858066 37 100.0 40 NNNNNNNNNN ..................................... TTGAACCGCGGCCAGGAACCCATATTTACTTCGGAAATCG 2858143 37 100.0 36 NNNNNNNNNN ..................................... AAAATCAACCGCGTGGTTCGATCGTCACCCGGTATG 2858216 37 100.0 39 NNNNNNNNNN ..................................... ACTCATACGGGGGGCCTCTATATGTGGCTGGAGAATCCA 2858292 37 100.0 37 NNNNNNNNNN ..................................... TATAATTGCAGGATGTTTATCCCTTCAGCTAATTCAG 2858366 37 100.0 41 NNNNNNNNNN ..................................... TTGGAGATGTGCTGAGTCATCGCCAGCTCATGCAGCGTGAC 2858444 37 100.0 38 NNNNNNNNNN ..................................... TGGTCACGTCGTACTGCGCGGCCTGCTCCGGTTCTGGT 2858519 37 100.0 36 NNNNNNNNNN ..................................... GAGACATCCGACCAGAGAGCTTCTTAAGGTGGCGTT 2858592 37 100.0 38 NNNNNNNNNN ..................................... CGGAACATCCGAAGCCTGCCAAGCTGAAATAGATTCCA 2858667 37 100.0 38 NNNNNNNNNN ..................................... TTTGGCCAAGAGCCTATCCCCTCATGGAATTAGAACCA 2858742 37 100.0 40 NNNNNNNNNN ..................................... CCATCTTGTTCCCCGTTATATCCACTACCCACATCTACCC 2858819 37 100.0 35 NNNNNNNNNN ..................................... AATAGTTGTGGCCGTGTATGTTGCCTCGGGAACAT 2858891 37 100.0 40 NNNNNNNNNN ..................................... CCACACTCGGAACATGTACGAGAAGTATATCTTGGATCTA 2858968 37 100.0 38 NNNNNNNNNN ..................................... GATAGGGTGGTTCTATCTACCAAACCCACCAACTACCA 2859043 37 100.0 40 NNNNNNNNNN ..................................... ACACTAACTGGTACAACCACAATGATTTTGTGGTCAATTA 2859120 37 100.0 38 NNNNNNNNNN ..................................... ATGACGTAGCGTCACCAGGTTCTAATACAAATGGATCA 2859195 37 100.0 35 NNNNNNNNNN ..................................... CTTTCTGGTTGTGATGTTCATCAAGCCGGAACACC 2859267 37 100.0 37 NNNNNNNNNN ..................................... TATTTTAAATAGATTGTAGTGCTATGTGACCAGTATT 2859341 37 100.0 36 NNNNNNNNNN ..................................... TGATGTGGAATCCATCGAAGACGTAACACACATTTA 2859414 37 100.0 38 NNNNNNNNNN ..................................... ACTTCTCTTCGTGGTAGAATATTTCTTGCTACCATTTC 2859489 37 100.0 39 NNNNNNNNNN ..................................... GCGACACTGAGTTTGGACACTCCTTGGCCAAACAAATAA 2859565 37 100.0 36 NNNNNNNNNN ..................................... CAAGAGGAGGATAAGGCTGGCGTGGGAAGTCTCCGG 2859638 37 100.0 38 NNNNNNNNNN ..................................... GCAACGTCAAAACGAATTGGGCATTGGGAACCACAGGC 2859713 37 100.0 34 NNNNNNNNNN ..................................... TCAATGCCTTCTCGGATAGCTTCCTCTCTCGTCT 2859784 37 100.0 38 NNNNNNNNNN ..................................... AAATGAGGCCATTGTGTTGTCTAAAACTTTCGTTAAAA 2859859 37 100.0 38 NNNNNNNNNN ..................................... TCTGCGGGGCTCTAGCGGGTTCCTCCGCCAAGTCCATC 2859934 37 100.0 37 NNNNNNNNNN ..................................... TTAGTGCTCTGGCATCATTCTTAGGCCCGGTTATCGC 2860008 37 100.0 36 NNNNNNNNNN ..................................... TGCGATATCTTTCGCAGGAAATGCTTCGTGTGCCGC 2860081 37 100.0 38 NNNNNNNNNN ..................................... CGGAGTCTACGATTCCAGGATAGATCCGGAGACTGATT 2860156 37 100.0 41 NNNNNNNNNN ..................................... CCTACTGCCATTGATATTGACCCGGATACAGCTATGGAGGA 2860234 37 100.0 41 NNNNNNNNNN ..................................... ATTACTGCTCGTGTGCTCGGACAGAGCATCACGGTGACCGT 2860312 37 100.0 1 NNNNNNNNNN ..................................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 47 37 37 GTTTCAATTCCCTTTTCATCGGGATAGGCTCTGCAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.90,-6.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [50.0-51.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [81,682] Score: 0.18/0.18 # # Final direction: R [0,5.05 Confidence: HIGH] >NC_015417 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 25061 30 100.0 35 TAATCCTATG .............................. TGTGTTATTCAAAGCACACCCAAATAGCGAATTAT 25126 30 100.0 38 AGCGAATTAT .............................. TTTAAATTGTTAAAATATTTTTTAAGTTCATTTTATGA 25194 30 100.0 37 CATTTTATGA .............................. TTAAGTATATTCCATTTTGATGAAAAACAAGCAATAC 25261 30 100.0 36 CAAGCAATAC .............................. CAAGAAGAAATAACTTTTGAAGATAAAGAAGATTTA 25327 30 100.0 36 AGAAGATTTA .............................. CAATGAAGAAATGAAAGCATCCACCAATGAGTATAC 25393 30 100.0 36 ATGAGTATAC .............................. TTGAGTGAAAGATGGAATGTGTTTAAAATAAATGAG 25459 30 100.0 36 AATAAATGAG .............................. GCAAGGGATTATTATAAGAAAAATAAATGTGATATT 25525 30 100.0 ATGTGATATT .............................. GATATTGAAAGTGGAAGAGTAATTAAAGTTTGGAC ========== ====== ====== ====== ========== ============================== 8 30 36 ATTAATAGATAACAAGATTTGTTTTTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:86.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.50,-0.50] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [202,236] Score: 0/0.18 # # Final direction: NA [0,0 Confidence: NA] >NC_015417 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 16802 30 100.0 37 NNNNNNNNNN .............................. GCTTTGAAAGCTTGTCCCGAATAGCTTGTACACTTAT 16869 30 100.0 35 NNNNNNNNNN .............................. GAAACACAGTTTAAAACAAATTTGGAAGTTGGAAT 16934 30 100.0 35 NNNNNNNNNN .............................. AGCTAAAAAGAATGGTGAATACCTTCCTGAAATTA 16999 30 100.0 36 NNNNNNNNNN .............................. GAATTAATAAAATTAATACAAGACAATACAATGGAA 17065 30 100.0 37 NNNNNNNNNN .............................. AAATTTGCCATATGCGGTCCCCAAAGTACCCATTTAC 17132 30 100.0 36 NNNNNNNNNN .............................. AAACCTACATGATGATATATGGAAAGTAGAGCTTAT 17198 30 100.0 36 NNNNNNNNNN .............................. AAGTAAGCTTTTCCAGTAACTCCCCTTACTTTTAAT 17264 30 100.0 34 NNNNNNNNNN .............................. TTAGTGCCATAGTTTGTACTCCAAATATCTAAAC 17328 30 100.0 37 NNNNNNNNNN .............................. ATAAAAATTTAAGATAAATTTAAGGGAAGACACTAAT 17395 30 100.0 36 NNNNNNNNNN .............................. TGAAGCAAGAAGAAAGAAGCGAATTTATAAAAGAGT 17461 30 100.0 36 NNNNNNNNNN .............................. TTTGCTTGTCTTTGTTTTTCTCTAACATACTCCTGT 17527 30 100.0 35 NNNNNNNNNN .............................. TCTATTAAAGATTTTAAAGCAAGATTTTCGCTTAT 17592 30 100.0 36 NNNNNNNNNN .............................. AGGTAAAGAACAAGACGATGAGGGATATTTTAGAGA 17658 30 100.0 36 NNNNNNNNNN .............................. TTTGTAACTGTAAAATCATTTAACTTTTTAATATCT 17724 30 100.0 36 NNNNNNNNNN .............................. TGTGATAGAGTAGCATTTAAATATAAGGTTCTAGGT 17790 30 100.0 35 NNNNNNNNNN .............................. ACATCTAATATAGTAATAGTCTTTTCTTTATCGTT 17855 30 100.0 37 NNNNNNNNNN .............................. AGAATTACGAAGACAGTATGAGAATGCTAGAGAACTT 17922 30 100.0 35 NNNNNNNNNN ..................G........... TTTGACAAGCCTGTTTTTTATCCATTTTTGACATT 17987 30 100.0 36 NNNNNNNNNN ............T................. GAAATCGGTTGTCCTTTTGTATAATCTCTTAATCCA 18053 30 100.0 36 NNNNNNNNNN .............................. TTTTGTTTTGTTCAGTATCTTTTTTTGGGAGTTCCT 18119 30 100.0 1 NNNNNNNNNN ...............T.T...........C NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 21 30 35 ATTAATAAATAACATAAGATGTTTTTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:90.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.70,-0.70] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [727,85] Score: 0.18/0.18 # # Final direction: F [0.59,0 Confidence: HIGH] >NC_015417 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 27180 30 100.0 36 TTCTCATTAG .............................. CCGATAGTGTATTCTTTACCTTCAAATTCTACTTTA 27246 30 100.0 34 TTCTACTTTA .............................. ATATAATCTTTTTTATGGAGGTGATACACTTGAT 27310 30 100.0 36 TACACTTGAT .............................. TGTTTAGCTAGGTAGTTTTGATAAACTTTAGTATTC 27376 30 100.0 36 TTTAGTATTC .............................. TGAAATTGAGAATAAGCAAAAATCAATTCTTGTAAC 27442 30 100.0 35 TTCTTGTAAC .............................. TCTGTACTCTCTTCTATAGTCATTTTTAATAGTGT 27507 30 100.0 37 TTAATAGTGT .............................. CATTTATATGGTTCTTGCTTGTCCGATTGACTTTATA 27574 30 100.0 34 TGACTTTATA .............................. TCGTAATTGTTAATTATTATTTCAATTTTCTTAT 27638 30 100.0 ATTTTCTTAT .............................. TATAAGTATA ========== ====== ====== ====== ========== ============================== 8 30 35 ATTAATAGATAACAAGATTTGTTTTTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:86.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.50,-0.50] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [68.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [160,293] Score: 0/0.18 # # Final direction: R [0,0.27 Confidence: MEDIUM] >NC_015421 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 916 35 100.0 19 NNNNNNNNNN ................................... GTTCGCGGGAGACCGCTCA 970 35 100.0 31 NNNNNNNNNN ................................... ATTCGCGAAAGTTCGTTGACGACAACCCGCA 1036 35 100.0 1 NNNNNNNNNN ................................... NNNNNNNNNN ========== ====== ====== ====== ========== =================================== 3 35 25 AACCCTTGCTACGAGCGAAAATCCGAAAATCGGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:51.43%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.50,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [56.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [917,816] Score: 0/0.18 # # Final direction: F [0.37,0.27 Confidence: LOW] >NC_015426 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 74335 30 96.7 34 TCACATTCAA ..........G................... TTTCAAACTTTTTGCCTATAGCATCTAGCTTTTG 74399 30 96.7 36 CTAGCTTTTG ..............A............... TCATAAAGGTGAAATTTTAGACCTAATGGAAATGGC 74465 30 100.0 36 TGGAAATGGC .............................. TCCGCTTCCGTTTTCACCGAAAATATTTGTTATCGG 74531 30 100.0 36 TTGTTATCGG .............................. TAAAGCAAGAGTGGTTGAACTAATTAAACAAGGCTT 74597 30 100.0 35 AACAAGGCTT .............................. GGCAAAAAGATAACCGAGGTGGAAAATAAAGCTGA 74662 30 100.0 ATAAAGCTGA .............................. CAATTGAACGC ========== ====== ====== ====== ========== ============================== 6 30 35 ATTTAAATACATCTCATGTTAATGTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [176,354] Score: 0.18/0.18 # # Final direction: R [0.27,0.96 Confidence: MEDIUM] >NC_015422 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 227573 36 100.0 30 NNNNNNNNNN .................................... ATCCGTGTAGCGATGCTTGATGACGATCTT 227639 36 100.0 30 NNNNNNNNNN .................................... CGCTATGGCCGCTGCCTCTCCCGCCATGCG 227705 36 100.0 30 NNNNNNNNNN .................................... ACACCGGAGACGTTCGAGCAAGGCTGGGCA 227771 36 100.0 30 NNNNNNNNNN .................................... ACACCGGAGACGTTCGAGCAAGGCTGGGCA 227837 36 100.0 30 NNNNNNNNNN .................................... TGGCGAACTTTTTGCAGGGATCGGACGAGT 227903 36 100.0 30 NNNNNNNNNN .................................... GCTACAGGGGGTGTTAGGGCCGCTCCCAGC 227969 36 100.0 30 NNNNNNNNNN .................................... ATATTTCGCGGACGTGAAAATTAGAGGAAC 228035 36 100.0 30 NNNNNNNNNN .................................... AGAGCCAGGCAGAGGCGTACAGCCACCAGC 228101 36 100.0 30 NNNNNNNNNN .................................... TCGAACTCCGGAGTGTCGTGGCCGCAGAAA 228167 36 100.0 30 NNNNNNNNNN .................................... CGAGCTTGTCGGCTTCGGAGCTCGCGCCGC 228233 36 100.0 30 NNNNNNNNNN .................................... CGGTCTGCACGGCGTGCGGCGTGTGCGGGG 228299 36 100.0 30 NNNNNNNNNN .................................... ATCGGCGACCGCCCAGTTTTCATGGTCGGC 228365 36 100.0 29 NNNNNNNNNN .................................... AAAAGCCGGCATAGGTGCCCGAGCCGATG 228430 36 100.0 30 NNNNNNNNNN .................................... TATGCCGCATCTGCGGCGTGCCAGTCGGGA 228496 36 100.0 30 NNNNNNNNNN .................................... TCGTAGTTCTCGTTCACCAGATCGGTGAGC 228562 36 100.0 30 NNNNNNNNNN .................................... TTGCCTTGAGCATCGGTGCTGAAGCCCTGG 228628 36 100.0 30 NNNNNNNNNN .................................... AGCACGAGGAACGCGTTATCGGTTGCGCGG 228694 36 100.0 30 NNNNNNNNNN .................................... CATCTGCCGATGCGCCAGACCCGGCACAAA 228760 36 100.0 30 NNNNNNNNNN .................................... GTTGCCGGCCAGCTCATGCGTAGGCGTCCG 228826 36 100.0 30 NNNNNNNNNN .................................... TCATCGGCGCCGCGTGCGCCGGCGCATCGG 228892 36 100.0 30 NNNNNNNNNN .................................... CAGTGAAGGCAGCGGAGAACGGCACGATCA 228958 36 100.0 30 NNNNNNNNNN .................................... TCCAGGAACTTGCCCCAGAACTTCCAGCCG 229024 36 100.0 30 NNNNNNNNNN .................................... TCCAGGAACTTGCCCCAGAACTTCCAGCCG 229090 36 100.0 30 NNNNNNNNNN .................................... TAACGCCACGGCCCCGTGACGTCGATCAGC 229156 36 100.0 30 NNNNNNNNNN .................................... TACCGTGAGGACATCATCACCGGGCGCGTG 229222 36 100.0 30 NNNNNNNNNN .................................... TACCGCCTATCAAGTTCGCCGAGCTGGCGG 229288 36 100.0 30 NNNNNNNNNN .................................... GCATGCGCGCGGTGCGTGGCGCAACGGTGT 229354 36 100.0 30 NNNNNNNNNN .................................... ACCAGGTGGCGCGCATCATCACACCCGTGC 229420 36 100.0 30 NNNNNNNNNN .................................... GCGCCGGACTATCAAACGCCCGACTGGCTG 229486 36 100.0 30 NNNNNNNNNN .................................... TGCAGAGCCCGGTTGAACGCCGAACTGCTG 229552 36 100.0 30 NNNNNNNNNN .................................... ACAGTCGGGCTGTTTGTTTTTTATGAGGCG 229618 36 100.0 30 NNNNNNNNNN .................................... CTAAAGATCGTTAAAAAGGCCCCGGGATAA 229684 36 100.0 30 NNNNNNNNNN .................................... CGCCAGCGTGGATACAAGCCCGAAGCCGTA 229750 36 100.0 30 NNNNNNNNNN .................................... AGGGAGGTGTGAATGTGGATGAATCCGATC 229816 36 100.0 30 NNNNNNNNNN .................................... CTAGACCACAGGTTGTTCACGATCAGCCTG 229882 36 100.0 29 NNNNNNNNNN .................................... GCTGCAGGAAGAACACCACGCGGCGCACC 229947 36 100.0 29 NNNNNNNNNN .................................... TCCGCGCGGCGCTGGAAAATTGCAGGAGG 230012 36 100.0 30 NNNNNNNNNN .................................... CAAGCGCCCCTTGCAATCCTCGGCCAACTC 230078 36 100.0 30 NNNNNNNNNN .................................... CACGCAAAGCCAGGAATAGTGCATTGACCT 230144 36 100.0 29 NNNNNNNNNN .................................... GCAATTCTCGTCATCAGCTCCGCGCGCCG 230209 36 100.0 30 NNNNNNNNNN .................................... AGGAGCGCTCGGCCGCCAAGCAAGCGCGCG 230275 36 100.0 30 NNNNNNNNNN .................................... TCCAGCAGCGTGTTGGCTCTGGACATTCAA 230341 36 100.0 30 NNNNNNNNNN .................................... CGTTTCCAACGAAACCCTGCAGCGCTGCCA 230407 36 100.0 30 NNNNNNNNNN .................................... ACACCGGGCTGCAGCCCAGTGTCTCGGCCA 230473 36 100.0 30 NNNNNNNNNN .................................... TGTCGGGCGCGGCAATGGATCGGGGCGATG 230539 36 100.0 30 NNNNNNNNNN .................................... CGGGCCAGGAGGTGCACGCTGCCGACGGCT 230605 36 100.0 30 NNNNNNNNNN .................................... CATGATGGTCGCTTGCGCCTCAACCGTTTT 230671 36 100.0 30 NNNNNNNNNN .................................... CGACAGATAAGCATGCACGTCGGCCAAGGA 230737 36 100.0 30 NNNNNNNNNN .................................... CAGGGTAATCAGGGATCGCGGCGGCCTGCT 230803 36 100.0 30 NNNNNNNNNN .................................... CACAGCGTGGCAAGGCGTTTCTGCGTGGAC 230869 36 100.0 30 NNNNNNNNNN .................................... TACAGCACCTCGCCTTCGCCAGGCTCGCTG 230935 36 100.0 30 NNNNNNNNNN .................................... CACAAGCCAGAGCATGGACAGGCCATCCGC 231001 36 100.0 30 NNNNNNNNNN .................................... CGCGTAGACGGCATCGTCGTCGGTGACCTG 231067 36 100.0 31 NNNNNNNNNN .................................... TCGATTACGCCCTCAATGACTGCCGTCTTGA 231134 36 100.0 30 NNNNNNNNNN .................................... TCGCCGTCGCGCAGGAACTGCACACCACTC 231200 36 100.0 30 NNNNNNNNNN .................................... TATGTCGCGCATCCTCTGCGGGCTCAATGG 231266 36 100.0 30 NNNNNNNNNN .................................... ACTCCAAGGGAGGATCGCATGCTGGCGCAA 231332 36 100.0 30 NNNNNNNNNN .................................... CGCACCGGCAGCAATGCCCGCACCGGCAGC 231398 36 100.0 30 NNNNNNNNNN .................................... TGGACATGTTGCCACCCGCGCCGCCGCCGT 231464 36 100.0 30 NNNNNNNNNN .........A.......................... AATTTCAACGCCATGGCATTCGCGTGGGGC 231530 36 100.0 30 NNNNNNNNNN .................................... GTGGGCGTCAGCATCCGCCTGCCCGGTAAG 231596 36 100.0 30 NNNNNNNNNN .................................... TCTGCTGGATGGCGGAAGAACGGGGGCGAG 231662 36 100.0 30 NNNNNNNNNN .................................... AATGGGTACAGTTTCGTTGGTCGGCATGGT 231728 36 100.0 30 NNNNNNNNNN .................................... CTTGGGCGCTGAGGATTTTTTCGGCGCCCT 231794 36 100.0 29 NNNNNNNNNN .................................... ACGGTGTCTCCGGTCTGCACGTCGATCTG 231859 36 100.0 30 NNNNNNNNNN .................................... CGGCCATAAAAACAAGCACCGGCTCCACGG 231925 36 100.0 31 NNNNNNNNNN .................................... CCGGAATCGATGCTGGAGGCGAAAGCCTACA 231992 36 100.0 30 NNNNNNNNNN .................................... GAGTGCATTATGCAAATATGCGTAATTCAG 232058 36 100.0 30 NNNNNNNNNN .................................... TTTTCGCGACGTTCCTTGCTGAACTTGTCC 232124 36 100.0 30 NNNNNNNNNN .................................... CACTGTGCTCATGGCACGCGACCGGGTTTT 232190 36 100.0 30 NNNNNNNNNN .................................... CTGGGCATGAGGTTGGCAACGGCTGACGGA 232256 36 100.0 30 NNNNNNNNNN .................................... ACTGCGGGCCGCTCTGCGTAGGCTGGCCTG 232322 36 100.0 30 NNNNNNNNNN .................................... CGGGGCGAGCTGCTGGTGCATGCCGGCAAG 232388 36 100.0 30 NNNNNNNNNN .................................... CGGGACCCCCAGCAGGGCGCGCCCTGCACC 232454 36 100.0 1 NNNNNNNNNN ............................ATTT...A NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 75 36 29 ATTCTAGATCACTGGGATATGCGCACTGGCCGGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [9,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.40,-3.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [55.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [296,334] Score: 0/0.18 # # Final direction: F [0.78,0.64 Confidence: LOW] >NC_015426 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 75803 29 96.6 36 TTTTTCTATG ............G................ TTCTTTAATTGATAAATGTAACAATTTCATTTCTGG 75868 29 100.0 38 TCATTTCTGG ............................. TCAGCTTGATACAGAGCCTCTAAGTTATTTCAATAGTC 75935 29 100.0 37 TTCAATAGTC ............................. TGAGGGCTTTTTTGATCTTTAAAACAGTTTCTATACC 76001 29 100.0 36 TTTCTATACC ............................. TTTGAAGCTTATCACCTATAAGTTTGTATTTTTTTC 76066 29 100.0 37 TATTTTTTTC ............................. ATGCAGTTTTAAAGTCTTTATTATTAGCTAGTGTTGC 76132 29 100.0 38 CTAGTGTTGC ............................. CCGCATTGAATAATTTTTTAGTTAAACATTTAAATTTA 76199 29 100.0 38 TTTAAATTTA ............................. GGATTATAGTAGTAGATAGAAAATTAGATTTAAAAAGA 76266 29 100.0 38 TTTAAAAAGA ............................. GCAATGGGTATGCGACTAGGTGGAGCTGGACATCAAGT 76333 29 100.0 35 GACATCAAGT ............................. ATAGTTTAAAAATGTTGTTCTTCCTCTGTTAAATA 76397 29 100.0 37 CTGTTAAATA ............................. GTGATTTAGCTGCTACAAATCCAAATGCTATTTCAAC 76463 29 100.0 37 CTATTTCAAC ............................. TTCAAGGAAGTGGTATTGGTCTGAATACTCTATCTTT 76529 29 100.0 37 CTCTATCTTT ............................. CAGATTACTTGGAACAAATAAAGTCAATAGTCTCTGG 76595 29 100.0 37 TAGTCTCTGG ............................. TAATTTCTTTTGCTTCATCTTTTTTACTTTCGTAGGC 76661 29 100.0 37 TTTCGTAGGC ............................. CTATATATTTTTGACTACCTTCCGATTTAGTTCCATA 76727 29 100.0 36 TAGTTCCATA ............................. ACAAAAAAATAACACATCCGTATCAATCGATTAGTT 76792 29 100.0 36 TCGATTAGTT ............................. GCAAGATGATAGCTGGTATGGCTAAAGATTATTTCA 76857 29 100.0 37 GATTATTTCA ............................. GTGCAAGACGTGTCATGTTATAAGTCTTTCCTTGACC 76923 29 100.0 40 TTCCTTGACC ............................. CAATACTGAACTATCCTAAGAGTGATATTCGCTCAATTGG 76992 29 100.0 36 GCTCAATTGG ............................. AGATTATAATAGAGTGACACAAAATTAAAACAATGT 77057 29 100.0 36 AAAACAATGT ............................. GTTAAAAGATTGCTTAATTTTAGAAGATTGCTGAAA 77122 29 100.0 38 ATTGCTGAAA ............................. CAAGCAACCATGAGTTTGATTGAGCATGGTAATTTAAG 77189 29 100.0 36 GTAATTTAAG ............................. CAACATATATTCACCACTTACAAGTTTTCTCATATA 77254 29 100.0 37 TTCTCATATA ............................. GGTTTTATTTTGAAGATGAATTTAATACTCTTTTTAA 77320 29 100.0 35 CTCTTTTTAA ............................. ATTCAGACGTGAGTATAAATTAGCAGCTGCCAACA 77384 29 100.0 36 GCTGCCAACA ............................. AGATGAAAGAGTTTATTTATCTAAGCAATATGGAAA 77449 29 100.0 38 AATATGGAAA ............................. CAAGCACGTTAGTATATGCATAGATGGAAAATCTGAAG 77516 29 100.0 37 AAATCTGAAG ............................. GGAAAAAAATAAAAATATATAAACTTCAAGTACCTAA 77582 29 100.0 38 AAGTACCTAA ............................. ATAGAAGGAATAAGCATTTTAGAAAATGCAGTTAAATT 77649 29 100.0 CAGTTAAATT ............................. CCCATTTTTC ========== ====== ====== ====== ========== ============================= 29 29 36 ATTTATAACTAACATAGTTCTATTAATAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:82.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.90,-0.90] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [467,198] Score: 0.18/0.18 # # Final direction: R [0.18,0.41 Confidence: MEDIUM] >NC_015426 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 80696 29 100.0 36 AATCTAGATA ............................. TTTCATGGGAAATAGCGAATTAGCCATTTCCCAATA 80761 29 100.0 38 TTTCCCAATA ............................. GAAATATATTATATAGATGTAGAATTATTGTGTCCGTG 80828 29 100.0 38 TGTGTCCGTG ............................. ATATATAGAATAATATTATCCAGATAGGAGCAATGTCA 80895 29 100.0 39 AGCAATGTCA ............................. ATGCATTAATGGGAATTATAGAATTAGAAGATAAGTAAG 80963 29 100.0 GATAAGTAAG ............................. GGAAATTAAA ========== ====== ====== ====== ========== ============================= 5 29 37 CTTTATAACTAACATAGTTCTATTAATAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.90,-0.90] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [268,210] Score: 0/0.18 # # Final direction: R [0,0.27 Confidence: MEDIUM] >NC_015426 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 82553 29 100.0 37 TTTTATACAA ............................. GTTTAAATTTAATAAAAATTCTGGTTGTGTAAAGGTA 82619 29 100.0 36 TGTAAAGGTA ............................. TAAAACAGTTGGAATGACAATCGTTACTTCCGCTAT 82684 29 100.0 36 CTTCCGCTAT ............................. GCTCAGGGTCAACTCAGCAAGTTGCTAGAAGGTGCA 82749 29 100.0 36 AGAAGGTGCA ............................. AATTACTTTTAATAATAACGGTGATATAAAAGACAG 82814 29 100.0 40 TAAAAGACAG ............................. CTAACCATTCTGGTCCCAAATCTAACATTGATTTAGATAC 82883 29 100.0 37 ATTTAGATAC ............................. CAAAATTATTATCACCTATTTCTATAACACCTTCTGA 82949 29 100.0 CACCTTCTGA ............................. TTTATTACCA ========== ====== ====== ====== ========== ============================= 7 29 37 CTTTATAACTAACATAGTTCTATTAATAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.90,-0.90] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [122,272] Score: 0.18/0.18 # # Final direction: R [0,0.18 Confidence: MEDIUM] >NC_015428 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1943645 36 100.0 30 NNNNNNNNNN ATC.C............................... AATTACGTGGCATGACATTCGTTTAGAAAC 1943711 36 100.0 30 NNNNNNNNNN .................................... CGTCCACTTGAGAATCATCCAGCCCGCCGA 1943777 36 100.0 30 NNNNNNNNNN .................................... ATGACGGCTGGCAACCTAAGCCACCTTATG 1943843 36 100.0 30 NNNNNNNNNN .................................... GCTGAACCAGCAACATCTGCAACAACGAAT 1943909 36 100.0 30 NNNNNNNNNN .................................... TGTGATCTCACGTGTTTCGATCTTGTAATA 1943975 36 100.0 30 NNNNNNNNNN .................................... TCGTAATCTTGCCGACAGCTGTGCCAATTT 1944041 36 100.0 30 NNNNNNNNNN .................................... CATGTGGATGCAAGATGTGTGGTACATTTT 1944107 36 100.0 30 NNNNNNNNNN .................................... AAAGTAAAGGGTTAATCAAATACTCAAGTG 1944173 36 100.0 30 NNNNNNNNNN .................................... CCAACGTTGATGAGAACCCGGGCGAATACC 1944239 36 100.0 30 NNNNNNNNNN .................................... CTAAGCAACTAGAGAAAATTGATGGCAGGG 1944305 36 100.0 30 NNNNNNNNNN .................................... ACGGCCCCAACTTGCTTAACGCCAGAAAGA 1944371 36 100.0 30 NNNNNNNNNN .................................... ACCTCGCAGAGGATTATGGCAACGGGTAAA 1944437 36 100.0 30 NNNNNNNNNN .................................... TTGGCTTTAGTTTAGGTGTCTTTTGATGAA 1944503 36 100.0 30 NNNNNNNNNN .................................... GGAGTACCCCACGAATTAATGGTATTAATA 1944569 36 100.0 30 NNNNNNNNNN .................................... TACTAAACCGGTTAAAGCTTCGTATATTTT 1944635 36 100.0 30 NNNNNNNNNN .................................... GGCGTGTTATACGATTAGACAAGTATGTTA 1944701 36 100.0 30 NNNNNNNNNN .................................... CCTTGCACAAAGCGGCCGCCACCTTTTTCC 1944767 36 100.0 30 NNNNNNNNNN .................................... ATTACTTTCGTAATAAGTCCCCACGGTATT 1944833 36 100.0 30 NNNNNNNNNN .................................... AGAACACGGTGCTCAAAAGTTTAGCGAACT 1944899 36 100.0 30 NNNNNNNNNN .................................... CACCACCCTCAATTCAACATCAACCTTATC 1944965 36 100.0 30 NNNNNNNNNN .................................... CGTCTTCATCGTCGGTAATATCAATTGGTG 1945031 36 100.0 30 NNNNNNNNNN .................................... GAATATCATGTTTGCTTGCACCGCTGGCAA 1945097 36 100.0 30 NNNNNNNNNN .................................... GTAGCTACTTTTAAGATCACGAAACTCGGT 1945163 36 100.0 30 NNNNNNNNNN .................................... TATCGAAACCGTTATTAACGGCCATCATGT 1945229 36 100.0 30 NNNNNNNNNN .................................... CTCCTTTATTTAGTAGATTCATTTAAGTGA 1945295 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 26 36 30 GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:69.44%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [60.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [98,30] Score: 0.18/0.18 # # Final direction: R [0.18,0.68 Confidence: MEDIUM] >NC_015433 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================================== ====== 1318035 38 100.0 28 NNNNNNNNNN TGA....GA.A.TA......................T. CAAATGTTATGGGGATAACTACCAGAAG 1318101 38 100.0 28 NNNNNNNNNN ....................................TT AACTGAAAATTAGTAGCGTAAGGAAGTG 1318167 38 100.0 28 NNNNNNNNNN ..........................T.........TT AACTGAAATTTAGTAGCGTAAGGAAGTG 1318233 38 100.0 28 NNNNNNNNNN ....................G...............TT AACTGAAAATTAGTAGCGGAAGGAAGTG 1318299 38 100.0 28 NNNNNNNNNN ................G....................T TCCTCTTTTACTTCTTTATTTGTTTCTA 1318365 38 100.0 28 NNNNNNNNNN ................G...................TT TCCTCTCTTACTTCTTTATTTGTTACTA 1318431 38 100.0 27 NNNNNNNNNN ................G....................C TGTAGATGTTAACCCACTCGATAATCC 1318496 38 100.0 28 NNNNNNNNNN ................G...................TT AACTGAAAATTAGTAGCGTAAGGAGCCC 1318562 38 100.0 28 NNNNNNNNNN ....................................G. CAAGGTCGAAAAGAAATACATTGATGTT 1318628 38 100.0 27 NNNNNNNNNN ...................................... ACATGGTTTTGATCCCACGTTTGGCCA 1318693 38 100.0 27 NNNNNNNNNN ...................................... ACATGGTTTTGATCCCACGTTTGGCCA 1318758 38 100.0 27 NNNNNNNNNN ...................................... ACATGGTTTTGATCCCACGTTTGGCCA 1318823 38 100.0 27 NNNNNNNNNN ...................................... ACATGGTTTTGATCCCACGTTTGGCCA 1318888 38 100.0 27 NNNNNNNNNN ...................................... ACATGGTTTTGATCCCACGTTTGGCCA 1318953 38 100.0 27 NNNNNNNNNN ...................................... ACATGGTTTTGATCCCACGTTTGGCCA 1319018 38 100.0 27 NNNNNNNNNN .....................................C TGCAGATGTTAACCCACTCAATAATCC 1319083 38 100.0 27 NNNNNNNNNN ...................................... ACATGGTTTTGATCCCACGTTTGGCCA 1319148 38 100.0 27 NNNNNNNNNN ...................................... ACATGGTTTTGATCCCACGTTTGGCCA 1319213 38 100.0 28 NNNNNNNNNN ...................................... GTATTAATTGGGATATTATTTATCTTAG 1319279 38 100.0 28 NNNNNNNNNN ...................................... GTATTAATTGGGATATTATTTATCTTAG 1319345 38 100.0 28 NNNNNNNNNN ...................................... GTATTAATTGGGATATTATTTATCTTAG 1319411 38 100.0 28 NNNNNNNNNN ...................................... GTATTAATTGGGATATTATTTATCTTAG 1319477 38 100.0 28 NNNNNNNNNN ...................................... GTCTCTTTTACTTCTTTATTTGTTACTA 1319543 38 100.0 28 NNNNNNNNNN ...................................... GTATTAATTGGGATATTATTTATCTTAG 1319609 38 100.0 28 NNNNNNNNNN ...................................... GTATTAATTGGGATATTATTTATCTTAG 1319675 38 100.0 28 NNNNNNNNNN ...................................... GTATTAATTGGGATATTATTTATCTTAG 1319741 38 100.0 28 NNNNNNNNNN ...................................... GTATTAATTGGGATATTATTTATCTTAG 1319807 38 100.0 28 NNNNNNNNNN ...................................... GTATTAATTGGGATATTATTTATCTTAG 1319873 38 100.0 28 NNNNNNNNNN ...................................... GTATTAATTGGGATATTATTTATCTTAG 1319939 38 100.0 28 NNNNNNNNNN ....................................TG GCCACGATGCGGTCCAAAGAGATAATTA 1320005 38 100.0 28 NNNNNNNNNN ...........................A........G. CAAGGTCGAAAAGAAATACATTGACGTT 1320071 38 100.0 28 NNNNNNNNNN .........................G..........G. AAGGACTGGGACATATCCAAATTGTCGA 1320137 38 100.0 28 NNNNNNNNNN ..C......................G..........G. AAGGACTGGGACATATCCAAATTGTTGA 1320203 38 100.0 28 NNNNNNNNNN .........................G..........G. AAGGACTGGGACATATCCAAATTGTTGA 1320269 38 100.0 28 NNNNNNNNNN .........................G..........G. AAGGACTGGGACATATCCAAATTGTTGA 1320335 38 100.0 28 NNNNNNNNNN ...........................A........G. CAAGGTCGAAAAGAAATACATTGACGTT 1320401 38 100.0 28 NNNNNNNNNN ....................................A. ACTTTTTTGAAATTTGCTAAAAAAGTTC 1320467 38 100.0 28 NNNNNNNNNN ...................................... GTATTAATTGGGATATTATTTATCTTAG 1320533 38 100.0 28 NNNNNNNNNN ...................................... GTATTAATTGGGATATTATTTATCTTAG 1320599 38 100.0 28 NNNNNNNNNN ...................................... GTATTAATTGGGATATTATTTATCTTAG 1320665 38 100.0 28 NNNNNNNNNN ...................................... GTATTAATTGGGATATTATTTATCTTAG 1320731 38 100.0 28 NNNNNNNNNN ...................................... GTATTAATTGGGATATTATTTATCTTAG 1320797 38 100.0 1 NNNNNNNNNN ...................................... NNNNNNNNNN ========== ====== ====== ====== ========== ====================================== 43 38 27 GTTTTACTGTTACTTAAATCTTGAGAGTACAAAAACCA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:71.05%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.70,-0.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [28-12] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [103,595] Score: 0.18/0.18 # # Final direction: R [0.37,0.86 Confidence: MEDIUM] >NC_015434 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2510751 28 100.0 33 GCTGATCGTG ............................ GCGGCCATACCGCGCGACCCCCACGAGTCCGGG 2510812 28 100.0 33 CGAGTCCGGG ............................ AGGACGGCGCCCACCTTGGCGTCGCTCTGTCCG 2510873 28 100.0 33 GCTCTGTCCG ............................ GGGGAGGCGTACCCCATGAGACTCGTCCGCTGG 2510934 28 100.0 33 CGTCCGCTGG ............................ TGGCCACCCTTCCCCCCGAACGTCCCTCACAGA 2510995 28 100.0 33 CCCTCACAGA ............................ GAGGTGGCCTGGCTCGGCCGGGTGTCACAGGCG 2511056 28 100.0 33 GTCACAGGCG ............................ TTGGCGTACGACAGCCCGAGCGCCGGAGTCCGG 2511117 28 100.0 33 CGGAGTCCGG ............................ GGGCCATGGCGATCTGGTCAGTGGTGATCACCG 2511178 28 100.0 33 GTGATCACCG ............................ CGGCCGTCCTCTACAACCAGTCCGTCTGACCGA 2511239 28 96.4 33 GTCTGACCGA ...........T................ CCCATCGCCCGGCTTCGGCTCGGCCGTGGTGGG 2511300 28 100.0 33 CCGTGGTGGG ............................ GGACGTGAGCCGGTACGTGCACTCGGAGGCGGG 2511361 28 100.0 33 CGGAGGCGGG ............................ CCCAGCCGATCCAGTGCTTGGCCTGGTTGCCGA 2511422 28 100.0 33 TGGTTGCCGA ............................ AGGCTCGCCATGTACCGCTGGGACGGAATCCCC 2511483 28 100.0 33 CGGAATCCCC ............................ ACCGGGGCCAGCTCCTCGTCGTCGCGGACCTCG 2511544 28 100.0 33 GCGGACCTCG ............................ AGGCTCGCCATGTACCGCTGGGACGGAATCCCC 2511605 28 100.0 33 CGGAATCCCC ............................ CTCCTTGCTTGCGGTAGGTGGGTCCGGGTGGAG 2511666 28 100.0 33 CCGGGTGGAG ............................ GATGTGCCCTCTTGGCGAGCACGATCCGGATCG 2511727 28 100.0 33 ATCCGGATCG ............................ CTAGTCGCCCCGACGGCCCGTGTAGTCCTGTGG 2511788 28 100.0 33 AGTCCTGTGG ............................ GCCATGCGCGTAGGTGACGTGTTCGGCGTTCTG 2511849 28 100.0 33 CGGCGTTCTG ............................ GTGGCGATGTGGCGGGCCCAGGTGGTGATGACG 2511910 28 100.0 33 GGTGATGACG ............................ TTCCCGACGCCAGTCCGACGGTTGCCAGTCCAG 2511971 28 100.0 33 GCCAGTCCAG ............................ GCCGCCGAGCGGGCGACCGCCCTCACCGCCCAG 2512032 28 100.0 34 CACCGCCCAG ............................ GGTGGCACCATAGCCACGGCAGACCCGGTGCGGG 2512094 28 100.0 33 CCGGTGCGGG ............................ GGTGCCCGGCCGGGTCGTGTACTCGGTGCCCTC 2512155 28 100.0 33 CGGTGCCCTC ............................ ATCACCCCCAGCGTCAACGCGGCGCTGTGGCTG 2512216 28 100.0 33 GCTGTGGCTG ............................ AATTCACCGGTCCGCTTGTTGATCGCGAGACCG 2512277 28 100.0 33 CGCGAGACCG ............................ TTCGGCAAGAACCAGCGGATCCACTCCGCCCCG 2512338 28 100.0 33 CTCCGCCCCG ............................ GTCGCTCCTTCTCGTCCTTGCGGGCCCGGGTGA 2512399 28 100.0 33 GCCCGGGTGA ............................ GCAAGCGTGCCATCGGGTGTGCCTTTCGGTGAG 2512460 28 100.0 33 TTTCGGTGAG ............................ AAGGCCGCCGCCGATTCGTTCAAGGCGCTTGGG 2512521 28 100.0 33 GGCGCTTGGG ............................ GGACAGCGAGGGTTACGACCCCGATATGGACGA 2512582 28 100.0 33 ATATGGACGA ............................ GGCGGCAAACGGCGCGGTGAAGGTGCCGGCCAG 2512643 28 100.0 33 TGCCGGCCAG ............................ AGGCCGGCCACCCCGAACACGGCTTCGCGCCGC 2512704 28 100.0 33 TTCGCGCCGC ............................ CTTCCAAACATCGCCCGGCAGACACGGGCTAGG 2512765 28 100.0 33 ACGGGCTAGG ............................ TTGGCGGGATCGGGCCAGGTGCCGCCAGTCCTG 2512826 28 100.0 32 GCCAGTCCTG ............................ TCTGGCAGAACTTTTTCGACATGCTCGGCCAG 2512886 28 100.0 33 GCTCGGCCAG ............................ GCCAGGGAAACGCCGGCCGCCGGGCTGACGTAG 2512947 28 100.0 33 GCTGACGTAG ............................ AGGGCCGTGACGAGTTGAGCGAACTTCTGCCCG 2513008 28 100.0 33 CTTCTGCCCG ............................ GTTCCGGAGTAACCCGGTGCTGGGCTACGGGCA 2513069 28 100.0 33 GCTACGGGCA ............................ GCAGCAGACAGCCGCAGAGAAGAGCTACCTCGG 2513130 28 100.0 33 GCTACCTCGG ............................ ACCAAACAGCATGTCCGGGACGCGGCTGACCAC 2513191 28 100.0 33 GGCTGACCAC ............................ ATGGCTTTAGCGTTGTGCGTCGGATCCTTCAAT 2513252 28 100.0 ATCCTTCAAT ............................ GCTTCTTGAC ========== ====== ====== ====== ========== ============================ 42 28 33 GGATCACCCCCGCGTGCGCGGGGAGCAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [4,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.40,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [25.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [79,241] Score: 0.18/0.18 # # Final direction: R [0.37,0.86 Confidence: MEDIUM] >NC_015474 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1688112 30 96.7 36 TTTGATAATT ................G............. CTTCGTCGTCGGGCCGAGGAGGGTTGGAAAAACCCT 1688178 30 100.0 37 GAAAAACCCT .............................. TAATAGCTCCCATCGCTCAACTTAGTGTACATGACCG 1688245 30 100.0 37 TACATGACCG .............................. GGGTTAACGCCCAAAGGGCGCAAGGTCTGGATGTTTA 1688312 30 96.7 38 TGGATGTTTA ....A......................... AGTATTCAAGAGGGTAAGGTGAGGTGAGATGACTAGCA 1688380 30 100.0 38 ATGACTAGCA .............................. TTTATGTAGTTGATCCTAGCTATATACCTGACGACATA 1688448 30 100.0 37 TGACGACATA .............................. GCGGTAACCTCTGTTTTTATCTATTCTGCTCTTAACG 1688515 30 100.0 37 GCTCTTAACG .............................. TGATGATGAACTCATGAGGGCTATCGAGTTAGCGTAT 1688582 30 100.0 36 GTTAGCGTAT .............................. TTTACCCGAAGTCGAAGTTCAAGGTGTACGTAACGC 1688648 30 100.0 37 TACGTAACGC .............................. TAACTGCCACGCCCAATGCACCGTCAACAGGCGTGTG 1688715 30 100.0 38 CAGGCGTGTG .............................. GTAGGCAATGACCTACGTCAGCAATTCCGTCAACATAA 1688783 30 100.0 40 GTCAACATAA .............................. CTACGACAGCCCCTCGCCGAAGAGCGAGCTGTTCACGTTC 1688853 30 100.0 36 GTTCACGTTC .............................. GGGACTCGGCGAACGGGAAGGCCGTCGTGTGGGTGA 1688919 30 100.0 39 GTGTGGGTGA .............................. GTAGACCACTTCCTCCCTGCTGAGCAGTTTGAAGAAGAC 1688988 30 100.0 36 TGAAGAAGAC .............................. CCATGAGCCCGGCGAAAAGCCGGGTGAGGGGACAGT 1689054 30 100.0 37 AGGGGACAGT .............................. CTACGAGAGCGTCCTGACCTACATCTTCGCCCAGTAC 1689121 30 100.0 37 CGCCCAGTAC .............................. TTCTACAGAGACTAACCAACACATCCGACGCAACAAC 1689188 30 100.0 38 ACGCAACAAC .............................. AGCTTTTCGATGTTCCCGTAATCCCTCAACGCCTCGTT 1689256 30 100.0 36 ACGCCTCGTT .............................. AGATTAAGCCGATAATCCTCAACGAAGACCAAATAG 1689322 30 100.0 36 GACCAAATAG .............................. TCTATCTTCGTCTGTTGGGAGGCTCATGAAGAATTT 1689388 30 100.0 37 TGAAGAATTT .............................. AGGTTATCCTTAGAGAGCATAGCCTCAGCCTTAGCCT 1689455 30 100.0 37 GCCTTAGCCT .............................. CCTCTTACTACCATCCTCACCCTTACGCTCAATCTTT 1689522 30 100.0 38 CTCAATCTTT .............................. GACGCTATGGCCTGAGAAGGGGGGGCTCTTAGTATTGC 1689590 30 100.0 37 TTAGTATTGC .............................. GAAAATCTTCTATAGCTCCAATATTGCGTTTGAGGTT 1689657 30 100.0 37 GTTTGAGGTT .............................. AGGGGAAGCAGGGGATGGCAGTTTATCAGAAATTTTA 1689724 30 100.0 36 AGAAATTTTA .............................. ACGTCAAGAAGAATATAGAACTGATTCTAGAAAAGT 1689790 30 100.0 37 CTAGAAAAGT .............................. CTGAATTCAAAGATGGGTTTTGGGTTTGCCCTGTGTG 1689857 30 100.0 38 GCCCTGTGTG .............................. GTGCGTGTTACTCGTTATGAGGTTGTGCTCAAGCTTGA 1689925 30 100.0 39 TCAAGCTTGA .............................. CGAGATGTTTTTTTCTTTATCTCTTACGTCTGGTGGCAA 1689994 30 100.0 37 CTGGTGGCAA .............................. ATAAAGTACATCGCAAAGAGGCACGGGATGTACGTGA 1690061 30 100.0 37 ATGTACGTGA .............................. CCGGTGTGAGCCCGGCCCGGGGGCCGGCGCCAAGGAT 1690128 30 100.0 37 CGCCAAGGAT .............................. AGAGCAGGTTCTGAACCTGATTTCATTATTTTTTTGC 1690195 30 100.0 39 ATTTTTTTGC .............................. TCACAACGTTCATTCCTCTCCCTCCTCGATCTCAACTTC 1690264 30 100.0 36 TCTCAACTTC .............................. TTTTTTCAGAACCTTGTAGGCTAGATATCTGTAAAA 1690330 30 100.0 37 ATCTGTAAAA .............................. CTTCCAATTTCGAAAATTTTTCTGTTATCTACTTGCT 1690397 30 100.0 37 TCTACTTGCT .............................. CGCCTCTATCCTGATCAGGGCGTAGGAGCCGTATATC 1690464 30 100.0 37 GCCGTATATC .............................. TCACCCCCCTCCTCGAGGCTGTCGAGCCACAAAATCA 1690531 30 100.0 38 CACAAAATCA .............................. GCAGTCAGCTGGAGAAATGGTGAAGGGTACATAATGCT 1690599 30 100.0 38 ACATAATGCT .............................. TTGAAACAAGCTCTTCATCAGAAGTGTAGAGCTGTGGT 1690667 30 100.0 36 GAGCTGTGGT .............................. GGCAATGGCTCTTGGAACAGGGATACAGCGAGAAGA 1690733 30 100.0 37 AGCGAGAAGA .............................. TTTCACCACCTTCCAACTCTTTTAAAATATAAAAAAA 1690800 30 100.0 37 TATAAAAAAA .............................. CTGGAGAGGATGAGGAGTGAAGATTGTAAAGGTTTTG 1690867 30 100.0 37 AAAGGTTTTG .............................. GTAAGTGTGGACACACAAAAGCAACCACCCCCAAAAA 1690934 30 100.0 38 CCCCCAAAAA .............................. TCACTTGGGAGCTACACCCGACAATATACGACAAGATC 1691002 30 100.0 37 CGACAAGATC .............................. CTCTAAGATGCGTTTTTCGATAAGATACGAATGAGAT 1691069 30 100.0 38 CGAATGAGAT .............................. CGTTGAATACGAGGATGTCCCCCCTCTCCTGAAGCCTA 1691137 30 100.0 39 CTGAAGCCTA .............................. CTCAACCTAACCACCCTGCCAATTACTTTCGACGAGATT 1691206 30 100.0 36 CGACGAGATT .............................. ATCTTTTAGACGAGAGAGAAGCTCACGCCGTAATGA 1691272 30 100.0 37 GCCGTAATGA .............................. TGGTCAAGGCGTGGGGCAGATTTGAGGTTCTACGATG 1691339 30 100.0 37 TTCTACGATG .............................. GTGGCGAAAGCCAAGACCGTATCGTGGTTTTCCTCAA 1691406 30 100.0 37 TTTTCCTCAA .............................. GCCAAGAGGGTCGTGAAGGAGGTCGGGTTAGATGCCG 1691473 30 100.0 36 TTAGATGCCG .............................. ACCTGCGTGGCCTTGCCGGTCACGACGCTCGCCGTC 1691539 30 100.0 36 GCTCGCCGTC .............................. CTGAGCCTGACCCTCATACCACCACCTCGAAGATCA 1691605 30 100.0 38 TCGAAGATCA .............................. AGCAGGTCGAGATGGCCAAGGACATGTTCGGCGTAGAC 1691673 30 100.0 37 CGGCGTAGAC .............................. TCTAAGTGGAAGGTTATTGAGGAAGCGATTAAGCTTT 1691740 30 100.0 38 ATTAAGCTTT .............................. CCCCTAAGCGAATTCATTAAGTTTGTAGAGAAAAGAGA 1691808 30 100.0 38 AGAAAAGAGA .............................. CTCCGATCTTGTTAGTTGCTTTCTCTTTTTCTAGAAAT 1691876 30 100.0 36 TTCTAGAAAT .............................. GTATTATGGGAACAGTAGTGCAGTGAGCGAGAGCGA 1691942 30 100.0 36 GCGAGAGCGA .............................. AACATCCTTGTCTGCCTTTATGTCTGTCGGAGCCGT 1692008 30 100.0 38 TCGGAGCCGT .............................. ATGATGCTGTTGAGAAAATAGAGAAAATGCTGGACAAA 1692076 30 100.0 36 GCTGGACAAA .............................. CTGGTATGCCATAAAAGGCTTCATAGTTTGTGGGTT 1692142 30 100.0 38 TTTGTGGGTT .............................. ATAGCTAAACCAGCTTACCCAGCAGCTACGGTAATCTC 1692210 30 100.0 37 CGGTAATCTC .............................. TTGATGCTCCATCTAAGCCTGTTGAAGTTCATAAGAA 1692277 30 100.0 37 TTCATAAGAA .............................. GGAAGTCCTTGACAGGATGTACGTCTCGACCGACCAG 1692344 30 100.0 36 GACCGACCAG .............................. CCATTTCAACCACCAGTCGAGGGTCGACTTGACCGC 1692410 30 100.0 36 ACTTGACCGC .............................. TTGATAAGAGAAATTGAGAAAAGGCTAGAGACCGCA 1692476 30 100.0 38 AGAGACCGCA .............................. CTCCGCTCTTCTTTTGACGTTTTTCCGAAAAATACCAG 1692544 30 100.0 37 AAAATACCAG .............................. TCCATTCTACTGGCAATTGTATCACTGAGAGGTAGTT 1692611 30 100.0 38 AGAGGTAGTT .............................. CTCCAACGGCGGAAGAAAGCCTGGGTGTCGTCTATTGT 1692679 30 100.0 39 CGTCTATTGT .............................. CCCCAATTGTCAACCTCCCCAACAAGTTCCAAAACTGAG 1692748 30 100.0 39 CAAAACTGAG .............................. AGTTAGCATATGAAGCAGAATTCATGGGTTGGGGTTCCC 1692817 30 100.0 37 TGGGGTTCCC .............................. ACCTTCCTTTGTTTCTCCCTGGGACTGGTTTTCTTCC 1692884 30 100.0 37 GTTTTCTTCC .............................. TACTTTAGTTTCTCGACGAAGTCTATTTTCCACTCCA 1692951 30 100.0 38 TTCCACTCCA .............................. TGGAGACGGGTGAGATTGATAGTGATGTTGCGCCATTG 1693019 30 100.0 36 TGCGCCATTG .............................. CAATAATCCAATTGAGTTCGACGTTGCAGAAGGCTT 1693085 30 100.0 37 CAGAAGGCTT .............................. TGAGAAACATTAGCGGAAGCGATAAGGCTCCAACCAG 1693152 30 100.0 37 CTCCAACCAG .............................. ACAACCAAGGTGGGGGTCACGCAAAACCGCGGCATGT 1693219 30 100.0 38 CGCGGCATGT .............................. TGAGCCGAGTTCGACAAAAGAATTCGAGCTGGAGATTG 1693287 30 100.0 37 CTGGAGATTG .............................. ATCCTACGTTCTGAAGTGGGCAGTTGAGGGACTAAGA 1693354 30 100.0 37 GGGACTAAGA .............................. TTTCAGAAGAGCTGATGAAGTTATAAGAAAAGAAAAC 1693421 30 100.0 38 AAAAGAAAAC .............................. CCAAAGGCTATTTTGATTTTGAGAGGGGAATACACAAG 1693489 30 100.0 37 AATACACAAG .............................. GCGCTGGGTCGTCAGGCTCATGAGGGACGAGGAGTTC 1693556 30 100.0 37 CGAGGAGTTC .............................. TTTTACTTATGCGTTACTCATATTTAAGTGTTTCGGT 1693623 30 100.0 37 GTGTTTCGGT .............................. CCCTTCTTGTATAGCTCCAATTTCTGTTGATACTCCC 1693690 30 100.0 43 TGATACTCCC .............................. TTGTCCATCTACCGTAAAATATGGCAACTTTGAGCAATCCTAC 1693763 30 100.0 37 GCAATCCTAC .............................. AGGAGTTTATACATAGGTATATACGAGGACATAAGTG 1693830 30 100.0 GACATAAGTG .............................. AGGCGCGATT ========== ====== ====== ====== ========== ============================== 86 30 37 CTTTCAATTCTATTTTAGTCTTATTGGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:73.33%AT] # Reference repeat match suggestion: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [205,486] Score: 0.18/0.18 # # Final direction: R [0,5.59 Confidence: HIGH] >NC_015474 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1492164 30 100.0 37 AGCGCGCTCA .............................. CAACCCTCCCGCACCCGCCGCCTCCCCCGCCCAAATT 1492231 30 90.0 40 CGCCCAAATT ...........................--- GACAGGGAAAATGTTAGTGGGACGGTTACTTTTTTGCCTG 1492301 30 100.0 37 TTTTTGCCTG .............................. CCACTACAAAACCCCTGTTCTTGTCCATTGCCGTTAT 1492368 30 100.0 37 TTGCCGTTAT .............................. GCTGAACATAGTCCCGTGGACGGCGTTCCAGGGGTAC 1492435 30 100.0 38 CCAGGGGTAC .............................. TCTTGGCTAATTCAATGCCGGCCGGGAGTATATCCCCA 1492503 30 100.0 36 TATATCCCCA .............................. ATGACGAGCAAGACAAAAGAATCAATAGACTGTATA 1492569 30 100.0 38 AGACTGTATA .............................. CGGGCGTTCGGCGGGTTGGGCAGGCTCCAGATCTTGCA 1492637 30 100.0 37 AGATCTTGCA .............................. CTCGGAGGCGTCGGACGTTGTAGTGGCGGTCACCGTG 1492704 30 100.0 38 GGTCACCGTG .............................. GTGGACTGGTGGATGCTCGTCGTGAGGGAGCCGGTCAG 1492772 30 100.0 37 AGCCGGTCAG .............................. CCAATCGGCCCCTTCAAGGAGGGGAAGGTCGTGGTCT 1492839 30 100.0 37 GTCGTGGTCT .............................. GACGTGGCTGGCCTTTGCCAAGACCGCCGTGAAGTAC 1492906 30 100.0 36 CGTGAAGTAC .............................. GGGCATGAGCCCGATCCTCCTGCTCGGGCTACTCCT 1492972 30 100.0 36 GGCTACTCCT .............................. ACTGGGAGGAGAGGATGTTCGTCGATGACCCCGTGC 1493038 30 100.0 37 GACCCCGTGC .............................. GAGGAGTTTGAAAGGTTTGTCGAGTGGGTGATGGGAG 1493105 30 100.0 36 GTGATGGGAG .............................. GTATTCGCTGTTGAAAAACATGTACGGTGATCCAAA 1493171 30 100.0 36 GTGATCCAAA .............................. GAGATTTATCCAGCGGCAAGATCGTTCCTTGACTCT 1493237 30 100.0 37 CCTTGACTCT .............................. CAGGTGGACTACCTCCATCTCCTCCCCGATGACGAGG 1493304 30 100.0 36 GATGACGAGG .............................. AGGTTGGGAAAATCTATGTGAACTTTGTAGTGAAAG 1493370 30 100.0 36 GTAGTGAAAG .............................. GGGAGCCCTCGGCCAAGGTCTCCCAGTTGCTGTTGA 1493436 30 100.0 37 TTGCTGTTGA .............................. GTCCCTGGGTTGCTGGCGTTTTTCTTCACGCCCTCAA 1493503 30 100.0 36 ACGCCCTCAA .............................. TGGACCCCAAAACTAAAATCTTGAAAATCAAAACCT 1493569 30 100.0 37 ATCAAAACCT .............................. CGGCGGTGAAGTTCCTAGAGTGGCTGAGGAGCCCGGA 1493636 30 100.0 38 GGAGCCCGGA .............................. GGTAATTGTCCCCAGGGACGCAATTATACTGACCTCCC 1493704 30 100.0 35 CTGACCTCCC .............................. GGGCCAGCTCGTGATCCCGGACACGGACGTGCAAT 1493769 30 100.0 36 GACGTGCAAT .............................. AGTTGCTAAGCAAGGGCTGGAGAGAAAAAGACGTTG 1493835 30 100.0 37 AAAGACGTTG .............................. ACGTGAAGAGCATGCCGTTACCACCGAACACCACCGA 1493902 30 100.0 36 ACACCACCGA .............................. AAGCTTTTATAAGATCCTCGAGAATACCATCTACCC 1493968 30 100.0 36 CCATCTACCC .............................. CGTTCCCTTGTTGAATGATGCACTTCCCAAGACGAT 1494034 30 100.0 40 CCAAGACGAT .............................. AAGACTTCTGAATCTGAAGCTCAACAAGTCATCGGTATTC 1494104 30 100.0 38 ATCGGTATTC .............................. CTAGGCCGGGGCAAAGGCCCGGCCTAGCCCCAATGACC 1494172 30 100.0 37 CCCAATGACC .............................. GTGGGCGACAAGAGGAACTTTGAGTTTGACGATTTGA 1494239 30 100.0 36 GACGATTTGA .............................. CGAAGCTGATGGCCGGCGTCTACACCCTGCTGGTGC 1494305 30 100.0 38 CTGCTGGTGC .............................. GAGATTTGGGGAGGTCTAGAGCTATTTAAGAACGATTA 1494373 30 100.0 36 AGAACGATTA .............................. TTCGAGCTCTACCTGAAGTTCCCGCCACAGATAAGC 1494439 30 100.0 34 ACAGATAAGC .............................. GAGCTCGGCGTAGTACTTCAGCGTTATCTGGTGC 1494503 30 100.0 40 TATCTGGTGC .............................. TCGGTCGTCGACGCCGTCTACATACCTGTCGTCGTCAGCG 1494573 30 100.0 37 GTCGTCAGCG .............................. AGGGCCTTCAGGGGCTCCCACCAGGCAGGGTCGTCCA 1494640 30 100.0 37 GGGTCGTCCA .............................. AGAAAAGCATACGTCGACTCCTTGAGCTTTTCGTTGC 1494707 30 100.0 37 TTTTCGTTGC .............................. ATCGAATTCATGTGGAACGGGATACAGGCAGGGAGCA 1494774 30 100.0 38 GCAGGGAGCA .............................. TGAGGTTTTATGACGTTAATGGGAATAAGTTACCGTAC 1494842 30 100.0 37 GTTACCGTAC .............................. CGTTGTAGAAGGCGTCGAACTCGGGGAACTCGGTGCT 1494909 30 100.0 37 ACTCGGTGCT .............................. CTTTTTTGTAGATTGTAAACTCTGTTTCGTTGCCTTT 1494976 30 100.0 37 CGTTGCCTTT .............................. TATGAGAGCTTCGAACTTTGTCTCTAAACGGATTAAG 1495043 30 100.0 37 ACGGATTAAG .............................. TCCTTCTTTGCTCCATATGTAGCTTATTTCCTTGTAG 1495110 30 100.0 36 TTCCTTGTAG .............................. TAGACACGATAGTCTTTATCGAGTTTATCTATGAGG 1495176 30 100.0 37 ATCTATGAGG .............................. TGGTTAGGAAATGGAGAGTGAGGAGGTAGAAAAAGTT 1495243 30 100.0 41 AGAAAAAGTT .............................. TATAACTCTGCTTACATCCTCCACAACAACCTCTATTCCTT 1495314 30 100.0 39 TCTATTCCTT .............................. CAACGCGATCACCAAGGATAAGGCACTATGCTCTACCTT 1495383 30 100.0 38 GCTCTACCTT .............................. GGATGGTGGTAGTATGAAGGCGGTGTTCCTGAACCTCA 1495451 30 100.0 38 CTGAACCTCA .............................. GTGCCGTATGCGGGGGACGAGAACATCGCTTTGCTCAT 1495519 30 100.0 35 CTTTGCTCAT .............................. CACGCTGTCCGCATACTTGACGCCAACGCGGAACG 1495584 30 100.0 36 ACGCGGAACG .............................. CTGCCCTCCTGTCGGCGTAGTTCAGAACCTCCCTAA 1495650 30 100.0 43 ACCTCCCTAA .............................. TCGGCGGAAAAGTGCTCCCGTGCCTGTTTTGGCTGAGAAAAGC 1495723 30 100.0 37 TGAGAAAAGC .............................. CTCGGCGATCTCGTATATCCCCCTTGAAACCCTCTTC 1495790 30 100.0 37 AACCCTCTTC .............................. GGAGGGCAACCATATACGTGAACTTTGTTGTATGTGA 1495857 30 100.0 36 TTGTATGTGA .............................. TCCTTCCACATAGCCAAGTACACCTATGAAATTGTA 1495923 30 100.0 37 TGAAATTGTA .............................. ATAGTGCTCGACGCAAACAACTTCGACGGCTGGGACA 1495990 30 100.0 36 GGCTGGGACA .............................. CCACTCGTGGCCGCCTTCTGGTATCTTGAAACCCAG 1496056 30 100.0 39 TGAAACCCAG .............................. GTTGAAGTAGCCACGCGCTATTGGCTCTGACCAGTGCCG 1496125 30 100.0 36 ACCAGTGCCG .............................. AAAAGGGCCACCTCCACGGTGTACTCTGCCAGAAAC 1496191 30 100.0 37 TGCCAGAAAC .............................. TATTAAGTTGCTAAACCTAAAAGAGAAGGTAAAACTG 1496258 30 100.0 36 GGTAAAACTG .............................. ACGTCCGCAGGCGTGAAGTCGTCGAGGGCCTTTCCC 1496324 30 100.0 38 GGCCTTTCCC .............................. GAAACTACAAATGATACAGACAATACTACCCTTATACA 1496392 30 100.0 37 CCCTTATACA .............................. AGATAAATGAGGAAGAACAAGAAACTGGGGCACTACT 1496459 30 100.0 38 GGGCACTACT .............................. CCAGAGAAGGTCGCAATGGGTCTAGGAGGCACATGGCT 1496527 30 100.0 37 GCACATGGCT .............................. ATGACGCTATACATGTTGTCCAACGCCCATTTGACCC 1496594 30 100.0 36 CATTTGACCC .............................. CGTAGACAACATAGACAACGTTTCTCGGTAACTCCT 1496660 30 100.0 37 GGTAACTCCT .............................. TGTAGCCGATGAACTCTTGCAATACCTTAGCATCCTC 1496727 30 100.0 37 TAGCATCCTC .............................. CTACAACAATTCCTCGCAGAAGTTTACAAGATATCAA 1496794 30 100.0 38 AAGATATCAA .............................. ACGATGCGACAGAAGAAGAGTTTGAAAAATTCGTAGAG 1496862 30 100.0 39 ATTCGTAGAG .............................. CTGCTCTTGATAGTAAGCACTCCATTAGCGATGCACATT 1496931 30 100.0 37 GATGCACATT .............................. TAGAGCTCCGTTCAACGTACACAGTGATGTACCAGCC 1496998 30 100.0 37 TGTACCAGCC .............................. TGATGTAAGCCTTCGCTAGAACTGGCAATTCGTCCCA 1497065 30 100.0 37 ATTCGTCCCA .............................. CTCATCCATCTCCGCTATGTATTTCTCCTTGCGTTCC 1497132 30 100.0 CTTGCGTTCC .............................. AGGCGCGATT ========== ====== ====== ====== ========== ============================== 75 30 37 CTTTCAATTCTCTTTTAGTCTTATTGGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [40.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [371,604] Score: 0/0.18 # # Final direction: R [0,5.68 Confidence: HIGH] >NC_015434 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================== ====== 2531437 26 100.0 35 GCGAGTTGGG .......................... GGACCGGCTGTTCGTGGCCATCGTCCGGGCACTGG 2531498 26 100.0 35 CGGGCACTGG .......................... TGGGTCCAGGCCGAAGGCGCCGTCTTCGACATGGG 2531559 26 100.0 35 TCGACATGGG .......................... CCGGCCGCCGCGCCGATGATGAACCACTTCCAGGG 2531620 26 100.0 38 ACTTCCAGGG .......................... CCGCTCGGCCTCAACATCGCCGGCAGCCTCATGGGATC 2531684 26 100.0 35 TCATGGGATC .......................... TTGCACGTGAGCAGCGAATGGGACCACGCGGAGGG 2531745 26 100.0 35 ACGCGGAGGG .......................... TGCGGGCGAACAGCTCGTCCAGGCGGGTCCACGGG 2531806 26 100.0 35 GGTCCACGGG .......................... CGGCGCATTCTGGCGACGCACGCCACCGGAGACGG 2531867 26 100.0 35 CCGGAGACGG .......................... ACCATCGATGGTGAGCGTCCAGCGGTGGGCTGGGG 2531928 26 100.0 35 TGGGCTGGGG .......................... CCGCTGCACATCTACGGCGACACCCACATGGAGGG 2531989 26 100.0 35 ACATGGAGGG .......................... GACCGGCCCATGCCTGCTGCTCACGCTCACGCGGG 2532050 26 100.0 32 CTCACGCGGG .......................... CGGCACGGTGATCCGCGACGACGACACCAGGG 2532108 26 100.0 35 GACACCAGGG .......................... GAGATCGGTAACGTTAACGCCACGCGATTTGAGGG 2532169 26 100.0 35 GATTTGAGGG .......................... GTCCCGCTGGCTCATGCCGCTGATCGTGCGCCAGG 2532230 26 100.0 35 GTGCGCCAGG .......................... CAGCTCGGACTGCTCCATCAGGGGGGTGCTCCGGG 2532291 26 100.0 35 GTGCTCCGGG .......................... GCGGCCTGCCAGTCCAGATTGCCGACCAGGGGGGG 2532352 26 100.0 35 CCAGGGGGGG .......................... ATGACGTGCTCGGTGGCCGGGTCGTCCGGATCCGG 2532413 26 100.0 CCGGATCCGG .......................... ACTTCCTGAC ========== ====== ====== ====== ========== ========================== 17 26 35 ATCACCCCCGCGTGCGCGGGGAGCAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [4,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.40,-12.40] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [30.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1974,933] Score: 0.18/0.18 # # Final direction: F [0.55,0.27 Confidence: MEDIUM] >NC_015435 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 1006630 25 100.0 36 AAATTGAAGT ......................... CAACCACATTAAGGAGTATGTGAGGATCAAGTCTGA 1006691 25 100.0 41 TCAAGTCTGA ......................... TCTTTATCAATAAAAGCCTCAGAGTCATAACTTAATATCCC 1006757 25 100.0 39 TTAATATCCC ......................... TATCCCCGGATAGTCCTTAAAAAACAAGGGCAAGACGTT 1006821 25 100.0 38 GCAAGACGTT ......................... GTGGGAATGCTTCAGGAAATGCTAGTACAAGCAATCAA 1006884 25 100.0 39 AAGCAATCAA ......................... TTATCCCTTTGATCTTGGGTTTCTTCACACTCTCACCAG 1006948 25 100.0 39 CTCTCACCAG ......................... AAAATAAGGGCAAAATAAGTTGCACTGTATACAATATAA 1007012 25 100.0 41 TACAATATAA ......................... TTAGTTCTTCCTCTTTTCTCTTTCTCTCTTGCTCTCTTCTC 1007078 25 100.0 40 CTCTCTTCTC ......................... TCTCCCTTCTTTCCCCTACCCAGCCCCCCCCCCTACCCCC 1007143 25 100.0 41 CCCTACCCCC ......................... TCAAACTGAGGTAGTAACTGTGATTGATTTGCGTTAAGTGT 1007209 25 100.0 40 CGTTAAGTGT ......................... ATAGTAAAAAAAGTCGTTAACATAGTTCAGAGAGCTTTAG 1007274 25 100.0 38 AGAGCTTTAG ......................... AGTTGATTCCTTTGATAGGACAGAGTAAAGGAGAGCGA 1007337 25 100.0 44 AGGAGAGCGA ......................... CTAATAAAATAAAGAACTAGAAATAAATAGATAGAAAACGATAT 1007406 25 100.0 35 AAAACGATAT ......................... TTGACTCCCTAAGGTTGCCACGCCTTGCTTCCACG 1007466 25 100.0 39 TGCTTCCACG ......................... TGTTTAACAGACTGATAGCCATCTCTAGATACATTTGGT 1007530 25 100.0 38 TACATTTGGT ......................... TCCAAATAAATATAATTATTCCATTCTGTATAGTTATT 1007593 25 100.0 41 TATAGTTATT ......................... GACCTAATGCGGTTGTACTCACTACTATCTTAGCGTTACCG 1007659 25 100.0 38 AGCGTTACCG ......................... TCATCACAATTAATATTACAATAGTATAAACTTTTAGC 1007722 25 100.0 38 AACTTTTAGC ......................... AGATTTAGTAGTAATCTTATGGAAAAAGATATACAAAA 1007785 25 100.0 40 ATATACAAAA ......................... TTCCTTATTAGTCCCTCAACAAAGTCATTTTTCTCTTCAC 1007850 25 100.0 40 TTCTCTTCAC ......................... TTTCCCATAAGCTGAGTTGAGTAACAGTTTGTAGTAAAGG 1007915 25 100.0 41 GTAGTAAAGG ......................... TTGTAGAAATGGGGTATGATACAACGTGGTACCATAATTTC 1007981 25 100.0 40 CCATAATTTC ......................... TGGGTAAGTTGGTGTACATAACTTTCAATGAGATTGATGA 1008046 25 100.0 38 AGATTGATGA ......................... TTTTAGTATTTGCTCTATGAATCCTATTAAATATGCGG 1008109 25 100.0 40 AAATATGCGG ......................... TGTATTCCAACATGCTACTCGTAAGGAGTTACGCAGACAG 1008174 25 100.0 39 ACGCAGACAG ......................... AACGCGTCCCACGTGCCTAACGTGTACTGCGTGTTGTAC 1008238 25 100.0 39 CGTGTTGTAC ......................... AAATTAATTATAGTCTTTTGAACATTATTTACCTGTAAT 1008302 25 100.0 40 TACCTGTAAT ......................... GCCGCCCCTGGCGGGTTTTGAGACACTTCCTGAGTCATTT 1008367 25 100.0 39 TGAGTCATTT ......................... GACACCACGCCTGCTAACTCCTCGCCTTCACTTATTTTT 1008431 25 100.0 40 ACTTATTTTT ......................... ATAACGACTTCGCCACTGTTGACAAGCTCGACATTAACGA 1008496 25 100.0 40 ACATTAACGA ......................... TGAGGACTCCTTTCACGTTAAGGACGTCGTTCAGGTTACC 1008561 25 100.0 38 TCAGGTTACC ......................... CAAATCGTGAGTGTGAGTTTTTCATTCGGGACTTACAC 1008624 25 100.0 38 GGACTTACAC ......................... AAATTGAAACTCACACTCACGGTTTCCGGGACGGTTTG 1008687 25 100.0 44 GGACGGTTTG ......................... AGAGAGTCAAAAACATTACAGGATCGCTTATGAACTAGCGCGAG 1008756 25 100.0 39 CTAGCGCGAG ......................... AAACTTTCTGGTATGATTTGCTGCAGACCGTTATTGAGT 1008820 25 100.0 39 GTTATTGAGT ......................... AACTCTTTCGCTGCCATTTCATCCCTCAGTTCGTATGCT 1008884 25 100.0 35 TTCGTATGCT ......................... AATTTTTTGGTGAGACTGTTAGAGTGAGAAGTAGT 1008944 25 100.0 43 GAGAAGTAGT ......................... AAACTAGTCTTTGACAAGCCATCATTAACGACGGAGAAAGTCG 1009012 25 100.0 39 GAGAAAGTCG ......................... TGAGAACTCAGGCGCTTCGTTCGTGTTGATGTAGTATTT 1009076 25 100.0 39 TGTAGTATTT ......................... AATCTGTGGGTGTAAGTTCCAAAATTGAAACTCACACTC 1009140 25 100.0 39 ACTCACACTC ......................... TTTTTTTCGATATTTGGCTCATTTTCTCACTAATAAAAT 1009204 25 100.0 39 CTAATAAAAT ......................... ACTCACAACCGTCCCAGTCTCACTTCTAGTTAAAAGCAC 1009268 25 100.0 38 TTAAAAGCAC ......................... CTAGGAGAAAGGCCGCGGGCGTCGTACGCCCCCGGTCG 1009331 25 100.0 40 CCCCCGGTCG ......................... ACCCCCTCAACAGAGAGATCACTCTTATCCACACTCGCCC 1009396 25 100.0 38 ACACTCGCCC ......................... TATAAACAATTTGGTGATAGTGTAGTAATAACTGTCAG 1009459 25 100.0 41 TAACTGTCAG ......................... TCAATATAAAAGCTTAAATACCTCTTTTTCCTATTCTTAAT 1009525 25 100.0 40 TATTCTTAAT ......................... ATTAGGTATTGTAAGCTGCGTTGTGCTTTGACCAGTAATC 1009590 25 100.0 38 ACCAGTAATC ......................... ATTGATTTTAAATGTTATTATGTCGCTAAGATTGTCAT 1009653 25 100.0 40 AGATTGTCAT ......................... CTGTTGTTCCTCGTATCTTTGCACCCACTCGTAAGCTCTT 1009718 25 100.0 36 GTAAGCTCTT ......................... ATTTTACACGCTTTTAACATAAATGTCCGCGATCCA 1009779 25 100.0 35 CCGCGATCCA ......................... CTATATATTCTCTCATTTTGATTAACTTCTACTTG 1009839 25 100.0 40 CTTCTACTTG ......................... AAAATGAACTACGTTTTACACTACGTTAAAAATACGTCAT 1009904 25 100.0 37 AATACGTCAT ......................... TGTTACGGTAGCGAACACGGTTATCTTCACCATTTAA 1009966 25 100.0 41 CACCATTTAA ......................... TAGAGGAAGGATTTGAACTACCGCTAGTAGAGGCGGCAGCC 1010032 25 100.0 37 GGCGGCAGCC ......................... TCAAAATATGTAGAGTTTCTGAAAGTTCTAGTACTGT 1010094 25 100.0 44 CTAGTACTGT ......................... AGATGAGATAGTAACTGAAGCCATAAACGATATGGTCAGGATTG 1010163 25 100.0 39 GTCAGGATTG ......................... GATAGTAATTCTGCATCACGTCAAGGATTGTTTTGATGA 1010227 25 100.0 37 GTTTTGATGA ......................... AGGAAGGACATAACTATTAACCTATCGCCCTGGGAGC 1010289 25 100.0 38 CCCTGGGAGC ......................... ATTATACCTAGACCGTACACAATGCCCTGACCAACAGG 1010352 25 100.0 36 GACCAACAGG ......................... TAGACATTAGTTCAAACGTGGTAACACATTCGGTTA 1010413 25 100.0 39 CATTCGGTTA ......................... GATTGTATAATCCTGTGAGCGTCAAACGACCTCATTCCG 1010477 25 100.0 39 CCTCATTCCG ......................... TCATATGTCTGATCATTATACTGTTTAGTTATTTGAAAG 1010541 25 100.0 39 TATTTGAAAG ......................... CAAACTGACATAACACAACAATTATCAACCACATATTAT 1010605 25 100.0 44 CACATATTAT ......................... TATGAGATTAAGACTGCGAACAAGTTACCGATCACTCCACGCAT 1010674 25 100.0 37 CTCCACGCAT ......................... AGATCTCCACCAAATGAGGGGTCAAGAGATATTCTCA 1010736 25 100.0 39 GATATTCTCA ......................... GATCTACACACCTCAAGCTCCAAGTGTAGATGGTTATAT 1010800 25 100.0 38 ATGGTTATAT ......................... TCTCATCCTCTCCCAGAAAAGGGAGATTCAAGACACTA 1010863 25 100.0 36 CAAGACACTA ......................... TGAACACCCTGGATTCTTCCCCCATTTAAGTATTAT 1010924 25 100.0 37 TAAGTATTAT ......................... TTTGAATCAGACCAACTTGGTAGTTTGAAAAGAGAGA 1010986 25 100.0 40 AAAAGAGAGA ......................... ATCTGGGCAGGAACTTGCACAAGGCAACGTTGTAGGGGCA 1011051 25 96.0 37 TGTAGGGGCA ..............A.......... TTGTCACTATACCCATATTGCCATTCCACAGTTATGA 1011113 25 96.0 37 ACAGTTATGA ...A..................... TTACTCTTTTCTGATGGCAGAATCTTGTATAGAAGGT 1011175 25 100.0 38 TATAGAAGGT ......................... TTTATACTCCATGGGGTGAAAAACATGGGGTATCTCAA 1011238 25 100.0 39 GGTATCTCAA ......................... ATTATCAAGTAAGTACTTCACTACGTCGTTTATCTTCTG 1011302 25 100.0 40 TTATCTTCTG ......................... AATATAACATATAACGAAAAGGGGAATTTTTTTGAGTACC 1011367 25 100.0 40 TTTGAGTACC ......................... TTGAACCTGATGTATCTAGTAACACTACCACCGTATCCTT 1011432 25 100.0 40 CCGTATCCTT ......................... GAAGCAAGCATGTGAGGAGTTACATGGCTGACACTCTCTT 1011497 25 100.0 37 ACACTCTCTT ......................... TGCGCTAACATGAGTTGGCACGGCATTTAGCTCACAT 1011559 25 100.0 40 TAGCTCACAT ......................... ATCTTATCATGTATATACGAAAAACCCAATATGCTCTTAC 1011624 25 100.0 37 ATGCTCTTAC ......................... ACAGTAGCCACAAGTTGATTAGCCGCTTGTAAATCCT 1011686 25 100.0 35 TGTAAATCCT ......................... GCCTCGTTCACTGAGGTGTCTATTACTAGCTTCAT 1011746 25 100.0 38 CTAGCTTCAT ......................... AACACCACATAATTCCCCTCTTTGTCCCTCTTCAGACT 1011809 25 100.0 36 TCTTCAGACT ......................... CTTCTTTGCGTTCTTGGTTTCTCTTGAGCTTGTCCG 1011870 25 96.0 38 AGCTTGTCCG ...T..................... AAAAAGGAATTTGAAACTCAAAGCTTTCACCCGCTAAA 1011933 25 100.0 39 ACCCGCTAAA ......................... TATAATTTAGATAAGTATTTGTGAACTCTTCCCTTATGT 1011997 25 100.0 41 TCCCTTATGT ......................... AACACAAGGAGAGGTAGGTAAAGTATACTGAGATCTTGATT 1012063 25 100.0 40 GATCTTGATT ......................... TAAGGGACATGTCAACGTATCAAAACGGCGTAGCTACGCC 1012128 25 100.0 39 TAGCTACGCC ......................... TAAAACACTCCTCAACCCTCTTTACCATCTCTAGATCGC 1012192 25 100.0 42 TCTAGATCGC ......................... GTTACACTACTTACGTCAGTTAGCAATGTTACGAGATGGTTT 1012259 25 100.0 36 GAGATGGTTT ......................... AGGAATAGAGATAGCTCTAGCTACCCTCTTAATCAC 1012320 25 100.0 39 TCTTAATCAC ......................... TCAAGCTCTGGACTAGTGATCCATGCTTCACCCTCACTT 1012384 25 100.0 39 ACCCTCACTT ......................... TAATCCTGTCCGCAAGCTCGTCCCTCAGGTAGGATATCA 1012448 25 100.0 41 TAGGATATCA ......................... TGTTGCATAGCCTCAATCGGTGGTAGACCAAACCCTTCAAC 1012514 25 100.0 39 ACCCTTCAAC ......................... GTCACTACGTACAATGCAGTACCTAGGAGGTAGCCTAGA 1012578 25 100.0 GTAGCCTAGA ......................... TATAATAAAA ========== ====== ====== ====== ========== ========================= 94 25 38 GTAGAATCCTTCATGGAGTTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.70,-1.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1414,134] Score: 0.18/0.18 # # Final direction: F [0.96,0 Confidence: HIGH] >NC_015435 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 985208 25 100.0 36 NNNNNNNNNN A......T.TT.............. GATATCTCATGTAAACCCTGCTGCCCACGTAAATAT 985269 25 100.0 42 NNNNNNNNNN .......T................. AGGAGGTATAGTGGTGAGTCGTCTGCCTTGAACGTTTACAAG 985336 25 100.0 42 NNNNNNNNNN ......................... ACACTGAGGACCTGACAGATGAGGACTTGAAGGGATATGGCC 985403 25 100.0 41 NNNNNNNNNN ......................... CACGGGCATAATATGATAAAGAACTTGGCTACTGTTCTCAT 985469 25 100.0 41 NNNNNNNNNN ......................... ACGGTTCTACACCGCGCGGGAAGGGTTCTTCTTCGTTAAAA 985535 25 100.0 41 NNNNNNNNNN ......................... AAGACCCAATCGTAGCTGAGTACGATCTGACGTATATGTTA 985601 25 100.0 40 NNNNNNNNNN ......................... GCGACGAAAACAAGAGGGAAAGCGAAATCATTCTAAGAAA 985666 25 100.0 51 NNNNNNNNNN ......................... ATCCACGTTCACGATTGGCACTCAGTGGTCCCAGGGGTTAGAATAAAAAAA 985742 25 100.0 39 NNNNNNNNNN ......................... ATGAACAAAAGAAAGGTGAGGACATGATCTTCTATGATG 985806 25 100.0 41 NNNNNNNNNN ......................... CATACCACACATTATAATTAAACATTCTTATCAAATTGTAA 985872 25 100.0 39 NNNNNNNNNN ......................... GTAGTAGCGACGTGTTCAAGGCAGTCGTTACATCGTTTA 985936 25 100.0 40 NNNNNNNNNN ......................... TTGGGTTAGCTACCCTCTTGATTACTTTTCTCAGATCATC 986001 25 100.0 36 NNNNNNNNNN ......................... TTATATATTGCCATAATAAGTTTGGGGGAAGCTCTG 986062 25 100.0 42 NNNNNNNNNN ......................... GGCGAAATAGTGTGTAATGACGACCGAAACGAAATTATGATT 986129 25 100.0 40 NNNNNNNNNN ......................... GGGGGCAAGCTCCCCTCTACTCTCACGATAATGATGAGGA 986194 25 100.0 40 NNNNNNNNNN ......................... TCTTGAGGATTTTTATGCCTCCTCGACAAAGTCCCCCGTG 986259 25 100.0 39 NNNNNNNNNN ......................... AGATGATATAGAGCTTTACTTTGCACCGAATGGTAATAT 986323 25 100.0 39 NNNNNNNNNN ......................... ATCAACGCCAAAGACCGTCATCATCAAATCCGTCTACAA 986387 25 100.0 40 NNNNNNNNNN ......................... TTAGGAGTGAAAATCAATCAACCATTTGAAGATGATAAAA 986452 25 100.0 40 NNNNNNNNNN ......................... TGAGTAAATCCAAACTCATCATCTTTGACTTTCTCAATCA 986517 25 100.0 40 NNNNNNNNNN ......................... AAGAAAAAACATACTGAGGGTGATCTACACCCTGAGAAAC 986582 25 100.0 41 NNNNNNNNNN ......................... GACATACATGACATGGAAATTGAGTTATGCATTTCATTCTC 986648 25 100.0 41 NNNNNNNNNN ......................... GAGAAGGGGAGTAGACGAGTGCATAAGGTGACGTTCTTTAA 986714 25 100.0 35 NNNNNNNNNN ......................... TTCAACTTTTACTTGATAAACACTACAATCTTTAA 986774 25 100.0 35 NNNNNNNNNN ......................... TTCAACTTTTACTTGATAAACACTACAATCTTTAA 986834 25 100.0 37 NNNNNNNNNN ......................... TCGACCGTAGCAGATATCGCAAGTGAAAAAGGAACTG 986896 25 100.0 41 NNNNNNNNNN ......................... AAAAAATAAGATAAAATGTGATGACAAAACGAATGAAATAA 986962 25 100.0 35 NNNNNNNNNN ......................... AGTGATACCCTACCTTCAAGGGAAGGGGACGGGAT 987022 25 100.0 38 NNNNNNNNNN ......................... AGAACGCCCTTAAGCTAGCGAAGAAGGCCCTTTCTCAG 987085 25 100.0 39 NNNNNNNNNN ......................... ACTGTTAGAGAGGCACTTAAGCTAGCGAAGGAGGCTCTA 987149 25 100.0 42 NNNNNNNNNN ......................... TTTCAAATCATGATGAGATTTGTAGAAAGATTTATAAGCATT 987216 25 100.0 39 NNNNNNNNNN ......................... AGGTGATCCACGAGTGTGGACTTATGGTATTGGAAATAT 987280 25 100.0 38 NNNNNNNNNN ........................A AAAAGACCTTCCTCTGCCCTGAGTTATCACATTTTGTT 987343 25 100.0 39 NNNNNNNNNN ......................... GGGCGTTTACCCCCGCCCCCGCGGGGTTAACTATCTGCT 987407 25 100.0 40 NNNNNNNNNN ......................... CTTGCTCAGAATCGTAGTAGTACCCAGGTGGACAACTAGT 987472 25 100.0 39 NNNNNNNNNN ......................... ACCGGGCGGAGTTCCTTAGAACCCAACCAGCGTAGTAGT 987536 25 100.0 39 NNNNNNNNNN A........................ AATAAAACCTAATAAAATTGGGTATTTTGACGTTGAAAT 987600 25 100.0 40 NNNNNNNNNN ......................... CCCCATCTGGTATGCCCTTGAGGAATTCTATATATCGAAA 987665 25 100.0 40 NNNNNNNNNN ......................... AGGGAAAAAACTGCCCTCATGGCGTTAAACTGGCGATAAG 987730 25 100.0 39 NNNNNNNNNN ......................... TTGCTCGTCTACCGCGTTTACCCCCGCGGCCCGGGTTTG 987794 25 100.0 40 NNNNNNNNNN ......................... AATTACTAGACCCAGTCTACGAGGGCGTTGGGTGGTCATA 987859 25 100.0 40 NNNNNNNNNN ......................... TTGATAGTGGTGATGATAAAATGATAATGAAGCCTCAGAT 987924 25 100.0 40 NNNNNNNNNN .....................T... CTACCGCATTTTTTCGGGGCGGTATGTCCTTCTGAGTACA 987989 25 100.0 37 NNNNNNNNNN ......................... AAATTTTTGTCCTCTAAAATGCCCTTGAGGGGGGGGA 988051 25 100.0 37 NNNNNNNNNN ......................... TTCAAGATTTTTTGTACTCTATAAAAGGTGAGTTATT 988113 25 100.0 39 NNNNNNNNNN ......................... TTATCAGGGCTTGGATCCTTGACCTCTTGAGACAAGTAC 988177 25 100.0 39 NNNNNNNNNN ......................... AGATAGGTCTGCGGAAAGCTGTGACGCCTTATTGTAACC 988241 25 100.0 40 NNNNNNNNNN ......................... AAGAAGATCTTGACGATTGTTGTAAAGATAAATACATAAT 988306 25 100.0 40 NNNNNNNNNN ......................... AAGAAGATCTTGACGATTGTTGTAAAGATAAATACATAAT 988371 25 100.0 40 NNNNNNNNNN ......................... AATTTTTTACTGAATACGATAGTTATATGATTCCTAAAGT 988436 25 100.0 45 NNNNNNNNNN ......................... CCGGTTGAGCTACGTGAAGCGGTTCAAGATTATCTTTACTGTTTA 988506 25 100.0 42 NNNNNNNNNN ......................... AATAATTGAAGCTAAAAATGAGTGGGAAGCTAGATACTTTTT 988573 25 100.0 39 NNNNNNNNNN ......................... GGGAACTATAATTTATGATGATGATGACGAAACTAATAA 988637 25 100.0 40 NNNNNNNNNN ......................... GTTGGCGGTGAAGACGTTCCGCAAAGCATGAGTGACGCAA 988702 25 100.0 37 NNNNNNNNNN ......................... CCGCGGGGAAAGGAACAGAGAAGGAAGAACGTGTTAA 988764 25 100.0 40 NNNNNNNNNN ......................... AAAAAATGTGATAAGAAAACACTATATAATTGAAAGGGAA 988829 25 100.0 40 NNNNNNNNNN ......................... ACTTAAACAAGTATAACAGAAACATTACAACGATGTATAT 988894 25 100.0 39 NNNNNNNNNN ......................... CATCAACGGGCGTCATCTTAGTAACGCCAAGTCTTAATG 988958 25 100.0 37 NNNNNNNNNN ......................... CAGGAGTGCCAGTTTCTCCACAAATGTCAGATACAGA 989020 25 100.0 39 NNNNNNNNNN ......................... GCGAAGCTAACTCCTTCCTTAACTTCTTCACCTCGTCTG 989084 25 100.0 39 NNNNNNNNNN ......................... GACAGAAAAGAACCGCCCTTATTTTATTGGGCGATTATG 989148 25 100.0 43 NNNNNNNNNN ......................... TCGCCGCCATCAAAGTCGCCAATATAGACGATAGTTCTGTCCT 989216 25 100.0 39 NNNNNNNNNN ......................... CTTAGAAAGGCACAAGTAATCAAGGCCCTAAAATGGGCT 989280 25 100.0 42 NNNNNNNNNN ......................... CTAACTAACGTGAAAGACGTAGATCTCATAACTATGATGTTA 989347 25 100.0 40 NNNNNNNNNN ......................... TAAGAAGAAAGGAGAGAGAGGAATTTGTTAATCAACTCTA 989412 25 100.0 39 NNNNNNNNNN ......................... AGGGGAGGCTCTTCACCTCCACCAACCCCCTGTCCCTGA 989476 25 100.0 41 NNNNNNNNNN ......................... TTGGAAAAGAGAGGTTTAGGTATGGTAATAAAGTAATTAGT 989542 25 100.0 40 NNNNNNNNNN ......................... ATGAAACCCCTCAGGGGGCGGGGGTAAACGCTCCCAAGCT 989607 25 100.0 40 NNNNNNNNNN ......................... ACGCAACTTTGTGAGAGGTAGGTCGCACAAGGGACTGCAG 989672 25 100.0 39 NNNNNNNNNN ......................... AAAAATGCAAGAGATCCATCCCCAAACCCAAAACCCCGC 989736 25 100.0 41 NNNNNNNNNN ......................... CAAAAGTGGGCCCTAGAACTATTGAAGGAGGAGGGGGGGGA 989802 25 100.0 36 NNNNNNNNNN ......................... TCAGACAGAGCGAGTCAATCAGTGCGAGTCAGTCAG 989863 25 100.0 39 NNNNNNNNNN ......................... GCAGAAAAGTATTTGAAAGAGGCGTTTAGGCGGATGGAT 989927 25 100.0 37 NNNNNNNNNN ......................... TTAATAGTCATTATTTTGATGAGATAATGGACTTTAT 989989 25 100.0 39 NNNNNNNNNN ......................... TTGACGTCATTGAAGACTACTTTTATCAAAAAAACGGAA 990053 25 100.0 39 NNNNNNNNNN ......................... TTCTCTGAAAGAGTTGAAAAAGTCATTTTTGACAGATAA 990117 25 100.0 41 NNNNNNNNNN ......................... CAGTGCGTAAGTGAGTCAGTGAGCGTAACAGTGTAACAATC 990183 25 100.0 39 NNNNNNNNNN ......................... AAGATGATATTTTCGAGGCCCGCAAGAGGGCCTTACAAA 990247 25 100.0 36 NNNNNNNNNN ......................... CGGGTATAGGTGTTCCGGCACTCTTGGATAGAGTTC 990308 25 100.0 38 NNNNNNNNNN ......................... TTGTTAACTACCGTTATCACCAATTGGCTGAAGGTGTA 990371 25 100.0 39 NNNNNNNNNN ......................... TTTCAAAAATTCCGAAGATTGTGTTTGACAAGCCTTCGC 990435 25 100.0 39 NNNNNNNNNN ......................... ATTTCGATTTTGTATTTTTGAATTATAAGGGGGAGTATA 990499 25 100.0 41 NNNNNNNNNN ......................... AGTAAAGGGGAGCTTGTCCCCCTACTCTCGATAGATAATCC 990565 25 100.0 35 NNNNNNNNNN ......................... AGAGCATTTCTTTCGCGGTACCCCGACCACGTCGA 990625 25 100.0 40 NNNNNNNNNN ......................... GTACTGAAGGATAGGCACCTGTGGTAACTGTGAACTGTAC 990690 25 100.0 38 NNNNNNNNNN ......................... GTTGAGGAAGATATCCCTAACTGGGAGTGGCGAACAAG 990753 25 100.0 38 NNNNNNNNNN ......................... AGCAGTTGTATCTCGTTGATCGTATCTCCCGCGTTGAT 990816 25 100.0 36 NNNNNNNNNN ......................... GGTATCCAGGCAAGGCGTCAAAAAACGCCTGGATCA 990877 25 100.0 41 NNNNNNNNNN ......................... GCGACACCTCTCCTAGACAATTGTACTAATATATACTTGAA 990943 25 100.0 44 NNNNNNNNNN ......................... GGTAGAGATTTTTTGATATGGGTGTTATCTAGAATTGAGAAAGT 991012 25 100.0 39 NNNNNNNNNN ......................... TGTGATAGTGAATAATACTGTGAAAAAGCTCAGTGTAAG 991076 25 100.0 38 NNNNNNNNNN ......................... TTCTATGCGGTATGGTTTAGGTCAATGAAATTGCCGGA 991139 25 100.0 39 NNNNNNNNNN ......................... GTTGAGGGAGAGCCGGAGACTGTCGACGTTTTCTATGAC 991203 25 100.0 42 NNNNNNNNNN ......................... AAAAATTTGACAGAGGTATGTAACTATCTGCCTCATCTAAAA 991270 25 100.0 41 NNNNNNNNNN ......................... ATAAAGTATCCACTCCACATCTCTGAGATCTTCATAAAGCA 991336 25 100.0 39 NNNNNNNNNN ......................... AAAGATGGAACTCATAAAATGGCTTATGGGGCTTTTTCA 991400 25 100.0 39 NNNNNNNNNN ......................... GATGATGAAGTATTAACACAGAAGTCAGAAGGTGAGGAT 991464 25 100.0 38 NNNNNNNNNN ......................... TGGATTTAATATAACTGTCCCTCCACAGAGTGGAATAA 991527 25 100.0 40 NNNNNNNNNN ......................... GTAATGCCATTGCAGTACGTGTTTCAGCCTCAAGGTACTG 991592 25 100.0 40 NNNNNNNNNN ......................... GAGAGGAAGATGTGGGGCAGAGTGAGATAATTGCTTCAGA 991657 25 100.0 39 NNNNNNNNNN ......................... AACGTACATCTCGAACAGTTTCAGCCTGGGCATGATCCC 991721 25 100.0 39 NNNNNNNNNN ......................... CTATCTCGACCACACCGAAAACCACGACAACACTATAAC 991785 25 100.0 34 NNNNNNNNNN ......................... AGCCACTTATTCGCTTACTTTAGTGCCAGTGCGA 991844 25 100.0 37 NNNNNNNNNN ......................... AGGGATACTCAAAAAGTAGCATAACAGTTGGGTAGAG 991906 25 100.0 40 NNNNNNNNNN ......................... CTGCACCTTCTGCTTCTACTACCTCTTCTTCATCTTCTGG 991971 25 100.0 41 NNNNNNNNNN ......................... CTAACAACTTCATGGGGTAGTAGTGATGATAAAGTGTTAAC 992037 25 100.0 41 NNNNNNNNNN ......................... ACATGTCCCCAATAATGACCCTTTCTATCGTAATCACGTTC 992103 25 100.0 39 NNNNNNNNNN ......................... AAGCATTTGAAGCTCATAGCCCTCTATCTTGCTTTTTCT 992167 25 100.0 41 NNNNNNNNNN ......................... GGGTATCCTGATCTGGGTGTCTACTTGATTGGGGGACTGTG 992233 25 100.0 39 NNNNNNNNNN ......................... CTAACTTGAACTAAATTTAACGCATTTTCGGGTACACCG 992297 25 100.0 41 NNNNNNNNNN ......................... ATGCAAATGCAATAATATATTATTCACAATTAAATCGTCTA 992363 25 100.0 41 NNNNNNNNNN ......................... CTAATTACTGATAACCCAATTTTGAATTTGATCTTAAATAC 992429 25 100.0 35 NNNNNNNNNN ......................... CTGAACAGATAGCATTATAATCTAATAATAAAATA 992489 25 100.0 39 NNNNNNNNNN ......................... TCATGTACCCGGACGGGATACCAGACAAGATCTCTACGA 992553 25 100.0 38 NNNNNNNNNN ......................... ATTGATATTTCTTGTCCTGGCTACTGTCAAGCTCCCAT 992616 25 100.0 38 NNNNNNNNNN ......................... AGAAGTACACTTCGATAGTTATAGATACCCTCCTTCTC 992679 25 100.0 41 NNNNNNNNNN ......................... GAGAAACTTAAAGTTAGGTGGATCTGGAGACATAGCAATGG 992745 25 100.0 38 NNNNNNNNNN ......................... TGATTTAGTTAATGACAAGAAAAGATGTTTAATATCAG 992808 25 100.0 45 NNNNNNNNNN ......................... AAGAAGAGAGTGGAGAGAAGGAAAAGAAGTATAATATATATAATA 992878 25 100.0 36 NNNNNNNNNN ......................... GGGGACTTAAATGAGAAAGATTTTTTTCATCATGAT 992939 25 100.0 40 NNNNNNNNNN ......................... TAGATTGGGATGAGCAAAGTATTTATTTAAGATTAGATAA 993004 25 100.0 37 NNNNNNNNNN ......................... CACTTGTGGTTAATTATGATTGTATAAATGGCTTCAT 993066 25 100.0 38 NNNNNNNNNN ......................... AAATCAAACTCTACCTTCGTGGGTAAAGGCGAACGACG 993129 25 100.0 37 NNNNNNNNNN ......................... AGGCAACGATATTATCGTCATCAATACGGACAGGACA 993191 25 100.0 38 NNNNNNNNNN ......................... TTCTTTATTTTTCTATGTGGTACCAATTAGGGCTGATT 993254 25 100.0 39 NNNNNNNNNN ......................... AAGAGGAAGAGAGTGAGGATTTTGTAGTGTTAGGATTGG 993318 25 100.0 43 NNNNNNNNNN ......................... AGGAATGCTGAAAATAGAGATGGACAAGTCTTTAGTTGGAATC 993386 25 100.0 39 NNNNNNNNNN ......................... TTCACGTTTACTACACAACGTTTAGCAGAATAGGAGAGA 993450 25 100.0 38 NNNNNNNNNN ......................... TCATATATTCTGTTATATATGTAGTATATACCCACAGC 993513 25 100.0 41 NNNNNNNNNN ......................... ATGACGTATGGTAACACTCCACTAGTTGAGGGTGTAAACTG 993579 25 100.0 39 NNNNNNNNNN ......................... TTTCACACTTGTTAACAAGATAACATTCAAAACATTCAT 993643 25 100.0 40 NNNNNNNNNN ......................... GCTATAGGTAGTGTGATAGCCTGAGGGAACGTGTAGGTGT 993708 25 100.0 40 NNNNNNNNNN ......................... TCAGTGTCGCTCACCTCGAACACAACGTTCTTACCGTGTT 993773 25 100.0 34 NNNNNNNNNN ......................... TCTTCTGTTCCGCCCCACACTCACCTGACAGGAA 993832 25 100.0 40 NNNNNNNNNN ......................... TTGCTATCATCAACTCAGTGAAAGTGAATTATATTATGTT 993897 25 100.0 37 NNNNNNNNNN ......................... AATGAAATCATGAAAGTTAGACTTGAAGTTGATGAAA 993959 25 100.0 38 NNNNNNNNNN ......................... TGGGCGAGAGGGTGCGCCTCAACACGCCTTAGAGCGTG 994022 25 100.0 38 NNNNNNNNNN ......................... TACGTTGATTGAAACTATTGGTTTTTGGGACATAAGAG 994085 25 100.0 40 NNNNNNNNNN ......................... CTAAAGGATATCAAATACATATCTACTATAAAGGATGGTA 994150 25 100.0 40 NNNNNNNNNN ......................... GGTTTTAATACTAACGGAAGTGAACTAGCGGGTAATGCGC 994215 25 100.0 39 NNNNNNNNNN ......................... AAAAAAGACTTAAATATCAACTAATTGACAACTACTATC 994279 25 100.0 38 NNNNNNNNNN ......................... CTTCCTCTCTATTTAACTGTGGGTCTCTCTTATTTTTA 994342 25 100.0 40 NNNNNNNNNN ......................... GGAGATGGATGGGGATAGTGTTTTTACCATCTTCTGATGA 994407 25 100.0 39 NNNNNNNNNN ......................... CGAACCCAACGTTAACATGCCCACTTGCACTAACTAAAT 994471 25 100.0 43 NNNNNNNNNN ......................... CAGGTTTGCCAGGTCTGGGGGAAGACTTACATGGCTACAAGAT 994539 25 100.0 40 NNNNNNNNNN ......................... TTGATATGGCTAATGATGTAATGAAACAAATAGAAGAAAA 994604 25 100.0 40 NNNNNNNNNN ......................... ATGATAGTGGTGATTAGGTAATGTTTTTCAAGCCTCAGAT 994669 25 100.0 36 NNNNNNNNNN ......................... AAGTGAGTTGTTGAGTGCGATAACCTCTGTTGGTCA 994730 25 100.0 36 NNNNNNNNNN ......................... TGAGGAGGGAGTGAAGGCGACCTACGAGTGGCTGAA 994791 25 100.0 42 NNNNNNNNNN ......................... ATAGATATGATATATATAACTAGTAGTGTAAATATAATCAAA 994858 25 100.0 39 NNNNNNNNNN ......................... TATCAATGTTACCTATCTTTTCCCTAACGTAAAGTATAG 994922 25 100.0 40 NNNNNNNNNN ......................... AAAAATTAAAATAGAAGAATCCTGAAGGGTTAAAATTGTT 994987 25 100.0 41 NNNNNNNNNN ......................... AAAGGTATAACGTAACCGTCTACAAAATCGCCTTTCTCTAA 995053 25 100.0 35 NNNNNNNNNN ......................... TTCAAGAGAGTATAAAGAAATTCAAGAAGAGATCA 995113 25 100.0 39 NNNNNNNNNN ......................... GTATTTAAACCACTAGAATACAGTTTAAACTACTTGCTA 995177 25 100.0 40 NNNNNNNNNN ......................... TTAAACGCGGGGCAAACCAACAACGGCCAAGGAGGAAACC 995242 25 100.0 38 NNNNNNNNNN ......................... TCAACAAACGTACAGGCTATCCCGTGGACGATAATGAG 995305 25 100.0 40 NNNNNNNNNN ......................... AAGCTTTTCCAATATTTTCCAATTTTGTGAAAACTTACTA 995370 25 100.0 41 NNNNNNNNNN ......................... TATACATATTTTTTGCAGACTTAACGCCAAACATCACATAC 995436 25 100.0 37 NNNNNNNNNN ......................... GAAAAAGATATAATAGTGAATATTGAAGTAAAAGCTA 995498 25 100.0 39 NNNNNNNNNN ......................... TCACTATAAAAACTAGGATAACTCCAAACGTTTTAGATA 995562 25 100.0 41 NNNNNNNNNN ......................... GAACGTGTAGGTGTAGTTAGTACTACTAGACCCAACCGTGA 995628 25 100.0 41 NNNNNNNNNN ......................... ACAGTTAAATGGAATAAAAACCCATTCAATGTTAAATTTGT 995694 25 100.0 39 NNNNNNNNNN ......................... CTTAGTAATCTACGTTGTAGCTGGGCACGCGTACAACGA 995758 25 100.0 39 NNNNNNNNNN ......................... GATGGATTCCAGAGAAAGAGATGATAATGTCAGAAGATG 995822 25 100.0 40 NNNNNNNNNN ......................... GGGCAAATAATATGCAAAGATGAAACAATAACAGATCTTG 995887 25 100.0 38 NNNNNNNNNN ......................... TACTATAATGACGTTGAGTATCTTGAGATACCGAAAAA 995950 25 100.0 39 NNNNNNNNNN ......................... TTAATGTAATAATGAATACAGTAAAAAGATTCAATAAGT 996014 25 100.0 40 NNNNNNNNNN ......................... AGGACTTAGTCAAACGGATTGAACAGTGTAAAAAGGAGCT 996079 25 100.0 38 NNNNNNNNNN ......................... GGGAATTACTTGAGAAACAGATGGAAAAGTATGAGAAA 996142 25 100.0 41 NNNNNNNNNN ......................... GTGCTACCCGTTCCCGTCACTGCCGAGACGTCAGTCAATAG 996208 25 100.0 40 NNNNNNNNNN ......................... GTGCATAGAACTGTTTGAGTTTCCTAACCGCTAAGTACAA 996273 25 100.0 40 NNNNNNNNNN ......................... AAAACCCCACCACAGGGGGTAAAACTGTGGATGAAGTAAT 996338 25 100.0 40 NNNNNNNNNN ......................... CTGGTAAAACCTCTCTACCGCATACCTCAACTTTACTTCA 996403 25 100.0 40 NNNNNNNNNN ......................... ATAAATCTGAGATGAGACTATGACAAGAAGTGATATATTC 996468 25 100.0 38 NNNNNNNNNN ......................... AAGAAGATGAAGGTGAGTGAGAAAAAGTTGCGGGATTA 996531 25 100.0 38 NNNNNNNNNN ......................... TCAATTCTTCTATTGGCAGAGGGGGGTAGGGGGGGGCT 996594 25 100.0 37 NNNNNNNNNN ......................... ACCATTATCTAAAGGGTAGGGTTGACTTGGTTATTGA 996656 25 100.0 36 NNNNNNNNNN ......................... GAGATCATTTTTATGTAGATGGAGAAGAGAAAAATT 996717 25 100.0 41 NNNNNNNNNN ......................... GAGCTATTGCCAGTAACAGTGTACGTATAGGATTCTAGTCC 996783 25 100.0 40 NNNNNNNNNN ......................... ATTTTAAGTGTTTTCGCTACATTAGAGGTAAAAGACTATA 996848 25 100.0 39 NNNNNNNNNN ......................... TCAGCTTCTCCCTCGAACATGGTAAGCATGATATTTAAT 996912 25 100.0 36 NNNNNNNNNN ......................... CAGGATTCAAGAAACAGATTGATTATAAAGTTGGAA 996973 25 100.0 41 NNNNNNNNNN ......................... CTTCGTCAGTAAACGTCGTCGATTCATGTAACAAGTCAATT 997039 25 100.0 37 NNNNNNNNNN ......................... TGTTTAGGTGAGAAGATTGTCTTTCACATATAGGCCT 997101 25 100.0 39 NNNNNNNNNN ......................... ATGAACTGGCCTAGACCTGACCCCTGATGATGGAATCTC 997165 25 100.0 38 NNNNNNNNNN ......................... ATAAAGGGGGTTACCATCAAAGTGCTCTCTGATGTTGT 997228 25 100.0 39 NNNNNNNNNN ......................... TCAAAGGGATAATGGCATATGATAGTGAAGCATATGTTA 997292 25 100.0 43 NNNNNNNNNN ......................... CAGGACTATCAGGACTACCCAAGCAGCGCTTGGCCTTCAGCTG 997360 25 100.0 1 NNNNNNNNNN ......................... NNNNNNNNNN ========== ====== ====== ====== ========== ========================= 190 25 39 CTTTCAACTCCATGAAGGATTCTAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.50,-2.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [13,467] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_015436 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1302007 28 100.0 33 NNNNNNNNNN ............................ TACCGATACCATAATGAGACGAACCAGTACCAG 1302068 28 100.0 33 NNNNNNNNNN ............................ CCCAGTCGTGTTACTGGTTTGATGCAGTCTACT 1302129 28 100.0 33 NNNNNNNNNN ............................ TCTTGTAAACGCCATGCGGCTTGTGCAAGTCCA 1302190 28 100.0 33 NNNNNNNNNN ............................ TATTTTCCATCATCGTGGGCGCACCGTCATAAT 1302251 28 100.0 33 NNNNNNNNNN ............................ TGTGTTTTCTCCCGTTGTTGAAGGTGATTCTTC 1302312 28 100.0 33 NNNNNNNNNN ............................ TCTCGCGTTCATTTTGAAAACGAGAATGAATAA 1302373 28 100.0 33 NNNNNNNNNN ............................ TAGCATCCATAGCACGCGTCTGTGGGACTGTCT 1302434 28 100.0 33 NNNNNNNNNN ............................ CACTTTGAAAAGTGCCTTTATACTGCCTTTTGT 1302495 28 100.0 33 NNNNNNNNNN ............................ TTCCCTGTCACCACTGTGGATACTTTCGCCAAG 1302556 28 100.0 33 NNNNNNNNNN ............................ CTGCCCTTTCGTTATCGCCATCAGTTTGCCACT 1302617 28 100.0 33 NNNNNNNNNN ............................ TGGGATGAGCGAAGGCGCGCAGGTCCTCACTGC 1302678 28 100.0 33 NNNNNNNNNN ............................ CCATATGTAAAGCACCTTGACGGCGATATATGG 1302739 28 100.0 33 NNNNNNNNNN ............................ TATTTTACTAAGTTCTTTTGCTGTCATGATTTA 1302800 28 100.0 33 NNNNNNNNNN ............................ TATCGGCTTCTTTGAGAAGCTCAATACATTCTG 1302861 28 100.0 33 NNNNNNNNNN ............................ CCTGAACCGTTCAGGTTATCATAAAGATGTCAC 1302922 28 100.0 34 NNNNNNNNNN ............................ TTACGCAACGCTATCTATACGGGCGAATGGCTCA 1302984 28 100.0 33 NNNNNNNNNN ............................ CGAGCAACCCTAAAAGAGACTATATGCAATCAT 1303045 28 100.0 33 NNNNNNNNNN ............................ TTATGATTCCCGTTAAAACGCCTAAAACTGATA 1303106 28 100.0 33 NNNNNNNNNN ............................ TATCAGCGGGAGGCTTTGTCGGTCATGATGGAC 1303167 28 100.0 33 NNNNNNNNNN ............................ TTCCTGACACGGCAGGGCATCATCGGAGACGAG 1303228 28 100.0 33 NNNNNNNNNN ............................ CATTTCGTCAATGCCATGATGTAAAGCCCTGAC 1303289 28 100.0 33 NNNNNNNNNN ............................ CTCATCAACGGAGAAGTGTTCCAATACGCATCC 1303350 28 100.0 33 NNNNNNNNNN ............................ TCAAGAGGCTGTTCCGCAGGGGGCACAGGGAAG 1303411 28 100.0 33 NNNNNNNNNN ............................ TGCTGTTCAGCGTAGAATGGCCGATTTGGAAAG 1303472 28 100.0 33 NNNNNNNNNN ............................ CGATAATGGGAACGCTCATACCACCAACATACT 1303533 28 100.0 33 NNNNNNNNNN ............................ CCCGTCTTTTGAAGATATTAAGTTAGTTGGTGA 1303594 28 100.0 33 NNNNNNNNNN ............................ CCACGTCTTCGCATACATACATCTCCTTCTATA 1303655 28 100.0 33 NNNNNNNNNN ............................ TATAATATACGATAAATAACAAATATTATATGA 1303716 28 100.0 33 NNNNNNNNNN ............................ TAATTTAAAGTTGTCTGCATCAAACCGCACACG 1303777 28 100.0 33 NNNNNNNNNN ............................ CACCATACTTCTCAAGAAAAAATTCAAACATTC 1303838 28 100.0 33 NNNNNNNNNN ............................ TGACCTTACCCTGAAAGTGTTCGCGGTAGTGGC 1303899 28 100.0 33 NNNNNNNNNN ............................ CCCGAACCGTTCGGGTTATCATGAAGATGTCAC 1303960 28 100.0 33 NNNNNNNNNN ............................ TATGCGTATCTTTTTATCGTAAAGGAAGGGAGC 1304021 28 100.0 33 NNNNNNNNNN ............................ TGAGGGGTGGGCTATGCGGGGAATCTGATGATT 1304082 28 100.0 33 NNNNNNNNNN ............................ TGACATCGCTCTTGCTTTTGGGCTACGACGAAG 1304143 28 100.0 33 NNNNNNNNNN ............................ TATGACACAGAAAAAGCGGACTGGGTATGTGAC 1304204 28 100.0 33 NNNNNNNNNN ............................ CGAATCCTGCGCCCAGTGGTTGTGCAGTCTTAT 1304265 28 100.0 33 NNNNNNNNNN ............................ TACCCTTCCCCCCATTCATTGGTATAGTCGGCC 1304326 28 100.0 33 NNNNNNNNNN ............................ TATTGCCGGAGAGCCCAAATAATATTCTTTCCG 1304387 28 100.0 33 NNNNNNNNNN ............................ TAAGACCCTATTCCCCGCATGACGCAAGGGAAT 1304448 28 100.0 33 NNNNNNNNNN ............................ TACCCTTCCCCCCATTCATTGGTATAGTCGGCC 1304509 28 100.0 33 NNNNNNNNNN ............................ TATTGCCGGAGAGCCCAAATAATATTCTTTCCG 1304570 28 100.0 33 NNNNNNNNNN ............................ TAAGACCCTATTCCCCGCATGACGCAAGGGAAT 1304631 28 100.0 33 NNNNNNNNNN ............................ TTGCTGACACACTCCTAGAGAAAAGCGGACTCT 1304692 28 100.0 33 NNNNNNNNNN ............................ TCTCCTCCGTCACCTTTGGTCGAGTAAAGACAG 1304753 28 100.0 33 NNNNNNNNNN ..................T......... TCATCCACAGAGACATAATCATCTATAGGTATG 1304814 28 100.0 34 NNNNNNNNNN ............................ CATTCCACTGATTCCATATTTGAAAGCACGTTTA 1304876 28 100.0 33 NNNNNNNNNN ............................ TGCTTGAGGCTGACCGTCAGCTTTTTCGTACTG 1304937 28 100.0 33 NNNNNNNNNN ............................ TGGAATTGGCAAAGTATGCCTCCTTTCGAAAAA 1304998 28 100.0 33 NNNNNNNNNN ............................ CGCATGAATACACGGTCGCCAATCTGACAGCGG 1305059 28 100.0 33 NNNNNNNNNN ............................ TAGCTTGTTGTTTCAAATCTTGTCATGAGAGCA 1305120 28 100.0 33 NNNNNNNNNN ............................ TGGAAAGGGCGGCATAGCACGGGGGGAATACAC 1305181 28 100.0 33 NNNNNNNNNN ............................ TGCGTTGTCCGCCTGCGCTCCGGCATCCGCAAT 1305242 28 100.0 33 NNNNNNNNNN ............................ TGCGTTGTCCGCCTGCGCTCCGGCATCCGCAAT 1305303 28 100.0 33 NNNNNNNNNN ............................ CTCTACCTGAGCAAGCTGTGACAGCAGCTGCAC 1305364 28 100.0 33 NNNNNNNNNN ............................ TGAATGGGGGGAAGGGTATTTCCGGATAAAATC 1305425 28 100.0 33 NNNNNNNNNN ............................ TGGGTTCCCATTCCCCGTCAGGGAAGGACGCGA 1305486 28 100.0 33 NNNNNNNNNN ............................ TCAGGTCGGTGATGCTCTTACTGCTGGTAGCAA 1305547 28 100.0 33 NNNNNNNNNN ............................ TTCTTTGGCATTGCATGTAGATGAATTGATGTC 1305608 28 100.0 34 NNNNNNNNNN ............................ CAAGGCAAATCTTCTACAGACTGTCGCAAAGATA 1305670 28 100.0 33 NNNNNNNNNN ............................ CCAAGTGTCGCTCCAGTAGACATCCCTGTAGAG 1305731 28 100.0 33 NNNNNNNNNN ............................ CATCAAAATATCTTTGTATATAATCGGTCCAAA 1305792 28 100.0 33 NNNNNNNNNN ............................ TTTGCGTGATGCAGTGACAGGTGTCTCCAGGGC 1305853 28 100.0 33 NNNNNNNNNN ............................ CCGTTTGGGTTTGTCAACAGAAAAAGTAAAAAC 1305914 28 100.0 33 NNNNNNNNNN ............................ TTGCCCTTTGAGTATGCCATATGCCTCATTTCT 1305975 28 100.0 33 NNNNNNNNNN ............................ TCATGTACTTCTCTGGTACATCTTTATGATAAC 1306036 28 100.0 33 NNNNNNNNNN ............................ CAAGGAAGACATAGAGGACATGAAGCGGAAGAT 1306097 28 100.0 33 NNNNNNNNNN ............................ CAAAAAGCACATGAGGCTTTACGCGCGGAAGAT 1306158 28 100.0 33 NNNNNNNNNN ............................ GATATCAGTTCTTTCGCTTCATGGGCAACGTGC 1306219 28 100.0 33 NNNNNNNNNN ............................ TAACCCAAACGGTTTGGGTTTGTCAACAACAAA 1306280 28 100.0 34 NNNNNNNNNN ............................ CATGAAAGACTGGAGGCGAAGATGCGCGCTTTGG 1306342 28 100.0 33 NNNNNNNNNN G........................... TTGATGAGATTTTTGAGCCTGTCTTCATACGTA 1306403 28 100.0 33 NNNNNNNNNN G........................... CGGAGAGGACGGAGAACGGATCAGGCAGCTTCT 1306464 28 100.0 1 NNNNNNNNNN G........................... NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 74 28 33 CTATTCCCCGCAAGTGCGGGGGTGTTTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.40] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [78.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [56,481] Score: 0.18/0.18 # # Final direction: F [0.68,0.55 Confidence: LOW] >NC_015436 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1320229 28 100.0 33 TATTCGTCAA ............................ GACTGGGAGGCCAACCGCTCGGACTCCCTTGCA 1320290 28 100.0 33 CTCCCTTGCA ............................ GATTCGCCGACAGGTTCGCACTGGAAGCCGGAG 1320351 28 100.0 33 GAAGCCGGAG ............................ GCAGGCCGTCAAGGATTCCTTGCGTCTGCGGCC 1320412 28 100.0 32 GTCTGCGGCC ............................ ATTCAGGAGATACAGATTGTCCTCTATCTCAA 1320472 28 100.0 32 TCTATCTCAA ............................ TACAGTTCCTCGATGCATATCAACTTTTTGTC 1320532 28 100.0 32 ACTTTTTGTC ............................ CATGGTGAAGACGACATCCTCGGTGATGGTGA 1320592 28 100.0 32 GTGATGGTGA ............................ ATCCATCCTGCTTTCCCTGCTCGCCTTCTCAT 1320652 28 100.0 32 GCCTTCTCAT ............................ CCACGCCGTTGCCCCGGCTGAACCTTCCCAAT 1320712 28 100.0 32 CCTTCCCAAT ............................ GGGGCAATCGGGAGCGGTCTGTCCGTTGAGTC 1320772 28 100.0 32 CCGTTGAGTC ............................ CAACAAGTAAAGCTGGTAGTCCTCAAGCCCGA 1320832 28 100.0 33 TCAAGCCCGA ............................ ACTTCCCGATGCTTTTCCCTGTCGCTTTCTCAA 1320893 28 100.0 32 GCTTTCTCAA ............................ AGTATACAACCTGCCAAGGCAGAAAGCAAGAA 1320953 28 100.0 32 AAAGCAAGAA ............................ GTAGATGAAGGACTCCTGCCTGCGGCGGATTT 1321013 28 100.0 33 CGGCGGATTT ............................ GATGAGGTCGTTTTGTACGGTATCGATGTGGTA 1321074 28 100.0 32 CGATGTGGTA ............................ TTTCACGGTCTGCGCCCAGAGCCTGCGCCTCG 1321134 28 100.0 32 CTGCGCCTCG ............................ GAAGGGGGACAAGGGGGACACCGGGCCTTCCG 1321194 28 100.0 32 GGGCCTTCCG ............................ GCTGTCGTATGACTTGCTGAACGTCTTGGCGT 1321254 28 100.0 33 GTCTTGGCGT ............................ TTCCGACGCCCAGCTTGAAGTTCGAGGAAAAAA 1321315 28 100.0 32 GAGGAAAAAA ............................ GCTAAGTTTTTCCGAGCGGAAAAGATCCCTTA 1321375 28 100.0 32 AGATCCCTTA ............................ GTCCTGTTTGGCACTCTGGGCGTTCTGTGACA 1321435 28 100.0 32 TTCTGTGACA ............................ ATAGCGGGAGGCGCCAGCTATCGGATTGCAGA 1321495 28 100.0 32 GGATTGCAGA ............................ CAACCTGCCAAGGCAGAAAGCAAGAAGACTGT 1321555 28 100.0 32 AGAAGACTGT ............................ ATGATGAAATTCTTCATGGCCTGCGTAGTTCT 1321615 28 100.0 33 GCGTAGTTCT ............................ GGGATCGGTGGTCATCATCGGACCGACGGAAGC 1321676 28 100.0 32 CGACGGAAGC ............................ CTGCCCGTGTTCCTGTTGTGCAGTTTTTTGAC 1321736 28 100.0 32 GTTTTTTGAC ............................ AGCGTCAACCAAATCCTTTCCCTTGTCAGCGC 1321796 28 100.0 31 TTGTCAGCGC ............................ TGTAGTTAGCCTTGAGTGCTTTTATAAGGAT 1321855 28 100.0 32 TTATAAGGAT ............................ ATATAAGTGCGTGTGGACCACTGCGCGGTAGT 1321915 28 100.0 32 GCGCGGTAGT ............................ CCGACAGCATCACCTTTACCGTCACGGATACA 1321975 28 100.0 CACGGATACA ............................ ACAAAAAAAA ========== ====== ====== ====== ========== ============================ 30 28 32 TTTCTAAGCTGCCTATGCGGCAGCATAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [53.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [773,86] Score: 0.18/0.18 # # Final direction: R [0.18,1.01 Confidence: HIGH] >NC_015437 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 2182797 32 100.0 34 NNNNNNNNNN TA.CTGCGTAT.A.....CATGT......... TCTCGCGCAGTGGCGATGGCCGATCGTTTTGCCG 2182863 32 100.0 34 NNNNNNNNNN ................................ GAGCCAATCATCCTGCGTCAAAACATTACTGCGA 2182929 32 100.0 34 NNNNNNNNNN ................................ GCGTGGGCGTCCTTTTGGCGCGGCGTTGTCCCGG 2182995 32 100.0 36 NNNNNNNNNN ................................ TCCCTTTTTCCATCCTGTTTGACATTGCTTTTCGCC 2183063 32 100.0 35 NNNNNNNNNN .......................A........ AGTCAAGGCGGTCGCCAAGCATCTTGTTATAGATA 2183130 32 100.0 35 NNNNNNNNNN T..CA.TC.ACGCGC....T............ ATCTGGCGATCACCGAGTTTATATCCATTTTGGAA 2183197 32 100.0 36 NNNNNNNNNN T..CA.TC.ACGCGC....T............ CCCATGCGCCGTTACGCGCAAACTCGATCGGCTGAA 2183265 32 100.0 35 NNNNNNNNNN T..CA.TC.ACGCGC....T............ CGCATCAGCCACGCCCCACTTTCGCCGTCAACGGA 2183332 32 100.0 35 NNNNNNNNNN T..CA.TC.ACGCGC....T............ ATGCTACGATGCTTTTTGCCGCAGGCTAGTATCCA 2183399 32 100.0 34 NNNNNNNNNN T..CA.TC.ACGCGC....T............ GGCAGGACAGAAGTATGCGGCTATCCAGCAGAAT 2183465 32 100.0 34 NNNNNNNNNN ................................ AGGTCAAAAATTTTTCATTTCTGGCATTTTTTCC 2183531 32 100.0 34 NNNNNNNNNN ................................ AAAGGGCATGAGAACTTAAAACCGCTCACGCAGA 2183597 32 100.0 35 NNNNNNNNNN ................................ ATCGTCTCGGCGAGAATAGCAATTTCTTGCGCTGA 2183664 32 100.0 35 NNNNNNNNNN ................................ CTTGCTTGCTCCTTCTCCGCCATGCCGATGCGCAA 2183731 32 100.0 34 NNNNNNNNNN ................................ TGCGGCAGAGGGCAGAGATCGCCCTTGCCTTGGC 2183797 32 100.0 34 NNNNNNNNNN ................................ CGCTCGACCTTTTCGGCGTGAGCCTGACGGATGC 2183863 32 100.0 34 NNNNNNNNNN ................................ GCCGTTTCACAGCAGTAGCGGATGATCGTATCGA 2183929 32 100.0 33 NNNNNNNNNN ................................ CTGTTTTCACCTGACCTACCCCCTCACATTTCC 2183994 32 100.0 33 NNNNNNNNNN ................................ TGCCGATAAGCGACAGGGGCGCACGTCTCTCGC 2184059 32 100.0 34 NNNNNNNNNN ................................ GCCACCAGCGGCGGCCACCCGTCTGATCGCGGAT 2184125 32 100.0 35 NNNNNNNNNN ................................ GGGTTGAACTGGAGCTTGGAATTGTACCAGCAGGC 2184192 32 100.0 34 NNNNNNNNNN ................................ TATGTTGGCATACCATACCGGTATGCGCATCGGC 2184258 32 100.0 34 NNNNNNNNNN ................................ CTCGCTCCATAACAACGTTATTCCTTATATCGGA 2184324 32 100.0 34 NNNNNNNNNN ................................ TTATGGAGCATGTGCTGCGCCTTGTTTTGGACGA 2184390 32 100.0 33 NNNNNNNNNN ................................ ATGGATGTGCTTGACGGTCTCCTGCATAAATAT 2184455 32 100.0 34 NNNNNNNNNN ................................ GCCGCAATAATACGGACTTTGCGTTTTCTGTATC 2184521 32 100.0 34 NNNNNNNNNN ................................ TTTTCCCGACGTATAGATATGTTTTCCTCCATGC 2184587 32 100.0 33 NNNNNNNNNN ................................ CGTCAAGCCCATGGCGATTTCGTCGAGCCAAGC 2184652 32 100.0 35 NNNNNNNNNN ................................ CACCCTTACCCATGCGGTTCAGCAATTCTCTCGTC 2184719 32 100.0 33 NNNNNNNNNN ................................ GAGGGAGAGAAAAAGAAGCCCGCACGATCCAGC 2184784 32 100.0 34 NNNNNNNNNN ................................ CCCACGTTTTTATATCCCGTACACGGCGGAAGCG 2184850 32 100.0 35 NNNNNNNNNN ................................ CACCCTTACCCATGCGGTTCAGCAATTCTCTCGTC 2184917 32 100.0 34 NNNNNNNNNN ................................ TGTGCGCGGAAACAATTTTTATATTTTATTAAGA 2184983 32 100.0 35 NNNNNNNNNN ................................ GAGACCTCCTCATCGGTGAGGAGGTCGGCGTCCTG 2185050 32 100.0 33 NNNNNNNNNN ................................ TACGTTAATCAGATTGGCTCTCCCGGGCAGGTC 2185115 32 100.0 34 NNNNNNNNNN ................................ CCAACACCTACATCGCTTGTTATGAACTGCGAGC 2185181 32 100.0 34 NNNNNNNNNN ................................ AGCGTGAATCACAAAGGCAGCAGAACGCCGTCGT 2185247 32 100.0 34 NNNNNNNNNN ................................ CGCTCGACCTTTTCGGCGTGAGCCTGACGGATGC 2185313 32 100.0 33 NNNNNNNNNN ................................ GTCAGGTGTATCTCAAGAGACAGTTGATAACTT 2185378 32 100.0 34 NNNNNNNNNN ................................ TGAGGTGACGACGCTCGCATGGTGCTGGCGGCTC 2185444 32 100.0 33 NNNNNNNNNN ................................ GGATGAGATGGCGAGGCGAGGATGGAGCCCGCA 2185509 32 100.0 32 NNNNNNNNNN ................................ GTCGGCGCAAGAAAAACATGCGCGAGATTTTC 2185573 32 100.0 35 NNNNNNNNNN ................................ TTGCGAACGCCGCTGCACGTCCGGGAGCAGCGCGC 2185640 32 100.0 33 NNNNNNNNNN ................................ CCGCTTCGGCGGGCGTGCACAAACTGCAGCGCC 2185705 32 100.0 34 NNNNNNNNNN ................................ GGGGCAGTCGGACGACAGACGAGGAGGAGGCCGA 2185771 32 100.0 34 NNNNNNNNNN ................................ CAACGGCTGCGATACGACGTACATTCCGACACGC 2185837 32 100.0 34 NNNNNNNNNN ................................ GAGCAGGCCGTTCGGCCGGTGGACAGGCGCAGAC 2185903 32 100.0 35 NNNNNNNNNN ................................ GTCTGCGGGGACATCCGCTGCGGCTACTTGGGAGC 2185970 32 100.0 34 NNNNNNNNNN ................................ CAACGGCTGCGATACGACGTACATTCCGACACGC 2186036 32 100.0 34 NNNNNNNNNN ................................ GGAGCCACGATGAAGAAAAAGTACATTGTCAATG 2186102 32 100.0 34 NNNNNNNNNN ................................ GGAACAAGGCACCGGGAAAACACGGACGGCACTG 2186168 32 100.0 33 NNNNNNNNNN ................................ GGAGCACAACGGTGACGCCTGCAAGAACAGGCA 2186233 32 100.0 34 NNNNNNNNNN ................................ CGGGCGAGATGTTCAGCCTCGCGACAAGCGATCC 2186299 32 100.0 34 NNNNNNNNNN ................................ CATGAGCTGTCTGTGGCGCAAGGAAAATCTTGTC 2186365 32 100.0 34 NNNNNNNNNN ................................ GAAACAAGCCTTGCCGTCCGAGCGTTTCTGCTTT 2186431 32 100.0 34 NNNNNNNNNN ................................ CACGGACGGCACTGGAACTCATCTCAGCGAGATT 2186497 32 100.0 34 NNNNNNNNNN ................................ CATCACGAAGGATAATATTCGAGCGACGGCACGA 2186563 32 100.0 34 NNNNNNNNNN ................................ GGAGCTTGCATTTGCAGACGCAGAGGACGAATCG 2186629 32 100.0 34 NNNNNNNNNN ................................ CATCGTCGCCGCTCTCGTCGAGAACGAAGCGGAT 2186695 32 100.0 35 NNNNNNNNNN ................................ GCAACAAAGGCGCTGATTTTAGAGCCGTGCTTGAA 2186762 32 100.0 34 NNNNNNNNNN ................................ GGCGGTGGATCGTGCGCTGTCTTGCCTGTCTGTG 2186828 32 100.0 34 NNNNNNNNNN ................................ ATTGGCGGGAAATGTTGATGCCGGGGGGAGGGTC 2186894 32 100.0 34 NNNNNNNNNN ................................ CTGTCAGCCAGTATGAGGCGGCATTGGCGATGGA 2186960 32 100.0 33 NNNNNNNNNN ................................ GAAGTGCTCGATACGATCCAGCGAGGGCTTGAA 2187025 32 100.0 35 NNNNNNNNNN ................................ GACGCCATCATAGACGCATGGGCGGTGTGGCTCTT 2187092 32 100.0 34 NNNNNNNNNN ................................ GCGCACCGCTGAGATTGCGCGCGAAATGACCGCA 2187158 32 100.0 34 NNNNNNNNNN ................................ CCTCGAAGTACAGATACAAGATATGGAGGGATAA 2187224 32 100.0 34 NNNNNNNNNN ................................ CACCGTGACGGAGCGGCGCAGTGGCACGCGAGAG 2187290 32 100.0 34 NNNNNNNNNN ................................ GCCGGAAATGAAGCTGTTGTATGACAGCATCAAG 2187356 32 100.0 34 NNNNNNNNNN ................................ CAAATGCCTGCGAATATGGCCTTCGTCTTTGACG 2187422 32 100.0 33 NNNNNNNNNN ................................ CGGAAAAAACGACGAGGCGGCAGCGGAGGATGT 2187487 32 100.0 34 NNNNNNNNNN ................................ TAAGGGAGTGTGCGGCGGCTGTGGGAAGTCTTGG 2187553 32 100.0 33 NNNNNNNNNN ................................ ACCTATGATATTGACGGCAAGCGATACGTAGAG 2187618 32 100.0 32 NNNNNNNNNN ................................ AAGGACGACTGGCAGTCTAAGGCGGCTGTATC 2187682 32 100.0 34 NNNNNNNNNN ................................ GATGGCAAATGCCTTTTCCGCTCGGCAGCCAATG 2187748 32 100.0 34 NNNNNNNNNN ................................ TACCGCTCTTTGAGGCGGAAGGATTTAAGCCGCT 2187814 32 100.0 34 NNNNNNNNNN ................................ CACAACTGGTTGGCATCCGGACGGATGAAAGCCT 2187880 32 100.0 33 NNNNNNNNNN ................................ CGTCATCTCGAACGGTACGCTTCCGACGGAGAC 2187945 32 100.0 34 NNNNNNNNNN ................................ TGAACCTTGCCTATGTGCTCGCCAAAGTCCATAA 2188011 32 100.0 34 NNNNNNNNNN ................................ GCTTCGGCGTCGTCGCCGACGATACGGACGCGGT 2188077 32 100.0 34 NNNNNNNNNN ................................ CGCAATTTGAGCGCCATCGGTGGCGGCGGGCAGG 2188143 32 100.0 33 NNNNNNNNNN ................................ TGAGCCGTTAGAGAAGTTGGAGGCGGCGACAAA 2188208 32 100.0 34 NNNNNNNNNN ................................ GCCGAAAATTGAGGTCGAACCCGAGTTTGATCGC 2188274 32 100.0 34 NNNNNNNNNN ................................ CCGCGCCCCTGCGCCCCGAGCTACACGCGCCGGG 2188340 32 100.0 34 NNNNNNNNNN ................................ ACAGCACGAGGGGCTTTGCTGTTTGCAGCACGAC 2188406 32 100.0 34 NNNNNNNNNN ................................ GCCTTGAGCGACTTCATCGGCACGCCCTTCGAGA 2188472 32 100.0 34 NNNNNNNNNN ................................ CTTATGTCTATCGGTGACAACATTCGCGCAGCGC 2188538 32 100.0 35 NNNNNNNNNN ................................ GCAAGCGCCTCGCCCGCCCCGCCGCGCGAGTAGCA 2188605 32 100.0 34 NNNNNNNNNN ................................ GCCCTGCCGCCAGAAGGCGGGCGCGTGCCTGGTG 2188671 32 100.0 34 NNNNNNNNNN ................................ CTGCCGTTTTCAAGCGGAACTGCCGAATATCGTA 2188737 32 100.0 34 NNNNNNNNNN ................................ TTCATTCAACGGTGTCGGAGAATCATAGGCCGTT 2188803 32 100.0 34 NNNNNNNNNN ................................ TTCAAACATCTTGCCGTTCGTACTCTTGGACTGT 2188869 32 100.0 34 NNNNNNNNNN ................................ AAAAGGCAGAGAAGTGCCAAGGGCATACTATCAA 2188935 32 100.0 1 NNNNNNNNNN ................................ NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 94 32 34 ATTTCAATCCACGCGCCCGCGTGGGGCGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [5,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-11.40,-10.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [48.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [60,161] Score: 0.18/0.18 # # Final direction: R [0.37,5.36 Confidence: HIGH] >NC_015460 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2475223 36 100.0 32 NNNNNNNNNN .................................... ATATGCATTACCGCAGTTCTCCAATAAGAATT 2475291 36 100.0 35 NNNNNNNNNN .................................... CTCCTTGTCGTTATGGTCTTCGTATTTGACAATAT 2475362 36 100.0 32 NNNNNNNNNN .................................... ATTTCATCAATAATCGCATTTTCAACATACTC 2475430 36 100.0 36 NNNNNNNNNN .................................... ATTGGTACTCGTACCCATCATTATCATCTGCAGTAC 2475502 36 100.0 32 NNNNNNNNNN .................................... ATAAGTCATTGCGTCCTTTGAACACAATGCAT 2475570 36 100.0 35 NNNNNNNNNN .................................... GTGATTAGGTTTTCAAAATAGGTTTTTTGAGAGTC 2475641 36 100.0 34 NNNNNNNNNN .................................... TTCCATTTTGGTTTCCCCTTATCTAATGAATATC 2475711 36 100.0 35 NNNNNNNNNN .................................... CCCTGTCTGGTGTACTCAATCATAAAATCAGGATC 2475782 36 100.0 35 NNNNNNNNNN .................................... GTTAGATTTCCATTTTTATAAGCTACTGTAGTCAT 2475853 36 100.0 34 NNNNNNNNNN .................................... TCCAAATGATACCCAAACCGCAACCACAATCTAA 2475923 36 100.0 34 NNNNNNNNNN .................................... CACCTATGTCTGTTAAAAGTTCTGAATTACCTCG 2475993 36 100.0 36 NNNNNNNNNN .................................... CCCTAGAAAGGTATCTAGGACTGCGGATCTGTTCAA 2476065 36 100.0 36 NNNNNNNNNN .................................... AAAATTGCAGGCCTGTTCAGCTGCGATTTTAGCAAT 2476137 36 100.0 35 NNNNNNNNNN .................................... CTTCCATATCCTCGATTGTATTTTCTAATGATTTG 2476208 36 100.0 35 NNNNNNNNNN .................................... ATGATAAAGTCATCGAATAAATGTTCGTGTTCTGT 2476279 36 100.0 35 NNNNNNNNNN .................................... TTTAAATCAGAAAGATAAGAATAGACCTCATCCGC 2476350 36 100.0 36 NNNNNNNNNN .................................... TATTTCTAGTTCGTCGTCTTCGTTCGGCTTGTGTAG 2476422 36 100.0 35 NNNNNNNNNN .................................... TAGCATCCATTGGTGGAAACTAGGGGCGTATACGG 2476493 36 100.0 32 NNNNNNNNNN .................................... TTCAACCATCCGAAACTTACGCATATCTGGCA 2476561 36 100.0 34 NNNNNNNNNN .................................... TGTTGCTGTGGCTAGATGTTGCGTTAAATTTAAA 2476631 36 100.0 36 NNNNNNNNNN .................................... GGACGGCGTCCTCCTCACCCTCTTCTAAGACATTGT 2476703 36 100.0 33 NNNNNNNNNN .................................... CGTTATATTTGTGTGACCTTTGTAATCGCCAAC 2476772 36 100.0 35 NNNNNNNNNN .................................... GTTTATTATTTCCTCTGCAATTTCAATAATTGGAT 2476843 36 100.0 33 NNNNNNNNNN .................................... TTTATGTTGTCTGGTATGCTCAAGCATAAACTC 2476912 36 100.0 37 NNNNNNNNNN .................................... TGATGTGTACTTCACCATTTTTATTGGTGCAGTTTCC 2476985 36 100.0 33 NNNNNNNNNN ...................C................ GACTGATCCATCAGGGTTTACGGTTTCAACCGT 2477054 36 100.0 35 NNNNNNNNNN ...................C................ TTGAGTCAAGTTAATAATGTCCATTTTTCAACTCC 2477125 36 100.0 36 NNNNNNNNNN ...................C................ ACCAGTAGCCGTTCCCTTTTTCTGAATTTTTAAAGA 2477197 36 100.0 37 NNNNNNNNNN ...................C................ TTTCTGTTTGCCGACAGTCTTATCCATTTCACGCAGC 2477270 36 100.0 35 NNNNNNNNNN ...................C................ AGTTCTTCAGTTGTATCTACTTTCTTGTACCCTTT 2477341 36 100.0 35 NNNNNNNNNN ...................C................ AGTTCTTCAGTTGTATCTACTTTCTTGTACCCTTT 2477412 36 100.0 1 NNNNNNNNNN ...................C...........ACTTT NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 32 36 34 GTTCTAACCTAGCCCTGTTTTAAAAGGGATTGAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.10,-4.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [70.0-85.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [110,148] Score: 0/0.18 # # Final direction: F [0.78,0.27 Confidence: MEDIUM] >NC_015460 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2519308 28 100.0 32 ATAAAGTACC ............................ ATTAATTTATAATGGCGTTTGCCTTTTATTTA 2519368 28 100.0 31 CTTTTATTTA ............................ CAAATTTTAAAAAATGACTAAGTCATTTTTT 2519427 28 96.4 32 GTCATTTTTT ............T............... CGGAACACGAAGCTGAAATTAAAAGAGGTTTA 2519487 28 96.4 32 AAGAGGTTTA ...................T........ GGATCGTGGATAAAATACCTTGCCGAACTTGT 2519547 28 100.0 32 CCGAACTTGT ............................ CCTAATTTAGCACGTTCGCCAATATTACAGCA 2519607 28 100.0 32 TATTACAGCA ............................ AAAATTCTTTTTGCCTAGCGATTTTATTAAAT 2519667 28 100.0 32 TTTATTAAAT ............................ AAACATCAAATTCATCATTTATATCTACTTTA 2519727 28 100.0 ATCTACTTTA ............................ TAGACACGAA ========== ====== ====== ====== ========== ============================ 8 28 31 TTTCTAAGCTGCCTATGCGGCAGTGAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [114,139] Score: 0/0.18 # # Final direction: R [0,1.42 Confidence: HIGH] >NC_015499 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1769654 36 100.0 38 NNNNNNNNNN ..TTTTC.A............AA.....C......T ATAGCGTTGTGCTAACTAACACAACGCTATTAGGATTG 1769728 36 100.0 40 NNNNNNNNNN .................................... GAGGACAAAAATGACTAATCTTTGGTGTTCTATTCACACT 1769804 36 100.0 43 NNNNNNNNNN .................................... AGGACGAGGCTATATTTTAAAAGAGTTTCAAGGGTTCATTAAA 1769883 36 100.0 43 NNNNNNNNNN .................................... TTTCTAACATTAATATCAAAGATGAAATCAAAGAGTATGAAGA 1769962 36 100.0 35 NNNNNNNNNN .................................... CTTGGCAGGTGTGAACCTGCCTGCGAATTATTTTA 1770033 36 100.0 42 NNNNNNNNNN .................................... ATGGGGGAGGGATGTCGTCCAAGACAAGGACGGGTCAGTCCT 1770111 36 100.0 39 NNNNNNNNNN .................................... TTTAAATGAAAGAAAAAAAATTAAGAAAGCTTGTTGTTA 1770186 36 100.0 41 NNNNNNNNNN .................................... TGAAAAAATGAAAGAAGCTGTTTCACTTCTTTTATCGATGA 1770263 36 100.0 41 NNNNNNNNNN .................................... AAAAAATGAAAAAATTAAAAATTTCTGAAATAGAGTCCTTT 1770340 36 100.0 39 NNNNNNNNNN .................................... ATAAGATAGTAGGCTTTTCAGGTTTTTTGGCAGGCATAA 1770415 36 100.0 41 NNNNNNNNNN .................................... TTTTCTGGACCTGGAGGTGAAGTATGTTGAAGGTAAAGGGA 1770492 36 100.0 41 NNNNNNNNNN .................................... AAGAAGAACTTAGAGAGATATTGAAAGACTTACGCCGGTGT 1770569 36 100.0 41 NNNNNNNNNN .................................... TTCTCGCAACCTGCGATTTTTGTTTTCTCTTCACGAGGAGT 1770646 36 100.0 42 NNNNNNNNNN ..........T......................... TAGAAGATAAAATTTAAAAAAAGGAGGACAAAAATGACTAAG 1770724 36 100.0 40 NNNNNNNNNN .................................... CAAGGCAGGGGTAAACCTGCCAAGAAGCTATTTCAAGAAA 1770800 36 100.0 42 NNNNNNNNNN .................................... CGCGCCCTTCTTGGGGTGTGCACTTCTTAGTTCAGGAAATTT 1770878 36 100.0 40 NNNNNNNNNN .................................... TACGGGCTTTATGTCCCACTTTTCTACGCTTACTCTGAAA 1770954 36 100.0 40 NNNNNNNNNN .................................... TTTGGGAGGTGGTATCCGTATTACGAGGACCCCTCGTATA 1771030 36 100.0 40 NNNNNNNNNN .................................... TACGGGCTTTATGTCCCACTTTTCTACGCTTACTCTGAAA 1771106 36 100.0 36 NNNNNNNNNN .................................... TATAAGAGTTTCTTTGGTTTTCTTCGTCTTCTCCTA 1771178 36 100.0 39 NNNNNNNNNN .................................... GCATGGGGGAGGAACGTCTTTATAGACGAGGACGGGTCC 1771253 36 100.0 42 NNNNNNNNNN .................................... AAACAAAAAAGTGAAATACTGGAAGAGGCTAAACGAAAATTG 1771331 36 100.0 43 NNNNNNNNNN .................................... TGGAGGGGCAGCCATACTGTTATGAGTCGGAGCCTTACGAATA 1771410 36 100.0 41 NNNNNNNNNN .................................... ACAATGAAATTGAAACTAGAGAGAAAAGTAGATTCACAAAA 1771487 36 100.0 42 NNNNNNNNNN .................................... AGGACAAAAAGATGAAATTGACGAAAGTGGCTCCCACAGAAA 1771565 36 100.0 39 NNNNNNNNNN .................................... GCGAGTCTAGTACAGGTAAAAGTACGATTGTATTTACGG 1771640 36 100.0 39 NNNNNNNNNN .................................... TTGATGAAAAGGTTATTTTAGAACTTGATGCACTGTATA 1771715 36 100.0 38 NNNNNNNNNN .................................... TAGAATTAGACTCGCTATATAGCGAGTCTAGTACAGGT 1771789 36 100.0 35 NNNNNNNNNN .................................... TTTGGACTTGGAGGTGAAGTATGTTAAAGGTAAAG 1771860 36 100.0 39 NNNNNNNNNN .................................... AATATGATTTTCAAATACTATAATAAGGAGGACTAACTA 1771935 36 100.0 32 NNNNNNNNNN .................................... ATGCATGGTAAAAATTTAATCTTATTTGATGA 1772003 36 100.0 37 NNNNNNNNNN .................................... AATCAAGGAAATAATTAGGGATTTGCGCAAGTGCAAA 1772076 36 100.0 36 NNNNNNNNNN .................................... CTGCAGTCTTCGTTTTTCTCTTCACGAGGCATTTAT 1772148 36 100.0 42 NNNNNNNNNN .................................... TCATGTCACACTCCGACCAGCGAGCAGCTGGCGGAGTTAAAA 1772226 36 100.0 38 NNNNNNNNNN .................................... AAGGACGGATTTACGTCCTTTGTAACAGGTCAGCTCTT 1772300 36 100.0 39 NNNNNNNNNN .................................... TAAAAAAAGCTATTAAATTTGAAAATAAGCATCAAAATA 1772375 36 100.0 43 NNNNNNNNNN .................................... AATGAAGCCTACTATCTTATAGTAGGCTTCAGTGGCTTTCAGG 1772454 36 100.0 42 NNNNNNNNNN .................................... AAGGTAGGTTTAAAAAAATGAAAAAAGAGAGTAAAAAATTAA 1772532 36 100.0 40 NNNNNNNNNN .................................... TGGAACTGGACTACTCATAGGGTATATGCTCCAAACCCAA 1772608 36 100.0 39 NNNNNNNNNN .................................... TGTACTTTATTGGAGTAAATATGTATCAAAAGAAGTAAA 1772683 36 100.0 42 NNNNNNNNNN ..........T......................... CATATGATGAAAATAACGGTGTAGAGGTTGGGGTTGAGTGTA 1772761 36 100.0 41 NNNNNNNNNN .................................... TTAGACAGGCTACATATCTAATAAACTTAACATACAGTAAG 1772838 36 100.0 41 NNNNNNNNNN .................................... CTCAAATCTTATAGACCCAACAAAGATACGTCCAGAAGCTA 1772915 36 100.0 40 NNNNNNNNNN ..........T......................... AATGGATGGTTTTTCCATCCAGGGAATAAATGGGGTGCTC 1772991 36 100.0 41 NNNNNNNNNN .................................... TCAAGAGATTTACTAGGAATGGAATGGATGGTTTTTCCATC 1773068 36 100.0 41 NNNNNNNNNN .................................... CTATGATTAGTCGAGAAGAGATTTATAGAATTTATCAAAAT 1773145 36 100.0 40 NNNNNNNNNN .................................... CGATTGTATTTACGACTAATGGCAACAGGAACATCGCTAT 1773221 36 100.0 42 NNNNNNNNNN .................................... TAGTCAATTTGCTTGAAGAGTGCAAAAAAAGCACTTTTCAAG 1773299 36 100.0 42 NNNNNNNNNN .................................... ACGAAACCTACTATAAAATAGTAGGTTTTTCAGGCTTCTTGG 1773377 36 100.0 40 NNNNNNNNNN .................................... AAATGATAATGAAAATCATTGTACTATTGCTGACAAAAAA 1773453 36 100.0 41 NNNNNNNNNN .................................... TGAAAAAAGGTTAAAAAAGATGATCATTAGCGTTGATGAAA 1773530 36 100.0 40 NNNNNNNNNN .................................... TATCCTCATTGCTATATGCATGGTAAAAATTTAATCTTAT 1773606 36 100.0 42 NNNNNNNNNN .................................... GGAATATACAATATTGTGAAAGGAATGGTAGTTCCTGAGCAA 1773684 36 100.0 39 NNNNNNNNNN .................................... ATTTTTTAGTTCTTCTTGAACTTCTGAAGAAGTACAAGA 1773759 36 100.0 39 NNNNNNNNNN .................................... TAAGAAAAAAAGAAGATTTGAAACAATACAAATATGAAA 1773834 36 100.0 39 NNNNNNNNNN .................................... ATTTTTTAAGAGCTTTAATTATTTTATGGTTTTTTGCAA 1773909 36 100.0 40 NNNNNNNNNN .................................... TATTTATGCTTAATTCAGAAGATCCTGAATATTTTGAATA 1773985 36 100.0 41 NNNNNNNNNN .................................... CTGTCCTGCAAGGGACAAGATCTACAAGTACCACTGGGAAA 1774062 36 100.0 42 NNNNNNNNNN .................................... GGAAATGGAGTAGCAGTTAAAAAGTCCAAGAGGTCAAAAATT 1774140 36 100.0 41 NNNNNNNNNN .................................... ATTTGAAGCAGGGAATATGATATTAGCAATGAATGGAACTG 1774217 36 100.0 41 NNNNNNNNNN .................................... GTAGATTAATGTTATTTAACAAGATGGGAAAGGAATTGATA 1774294 36 100.0 42 NNNNNNNNNN .................................... ACGTTGCCATCGACGTAGATGGTGACGTTTTTGGGTTTATAT 1774372 36 100.0 40 NNNNNNNNNN .................................... AAGGGCCAGCAAGGACATTCCCTTGCCGGCTCGCCCAAAG 1774448 36 100.0 40 NNNNNNNNNN .................................... AAGTAGAAGAACAATATGGGTTGTACGTACCCAGATTTGG 1774524 36 100.0 38 NNNNNNNNNN .................................... TTGTAAGATATGTGGAAGGGAAGTAGAAGAACAATATG 1774598 36 100.0 41 NNNNNNNNNN .................................... TTAGGGTTGTTGCAACACAATGTAGACGAGGCTTTCAAAAA 1774675 36 100.0 40 NNNNNNNNNN .................................... ACAGCTTATTGGGGCGTCGGTAATTTTCCTAAGTGTTTTA 1774751 36 100.0 40 NNNNNNNNNN .................................... CGACCGTGAGGCCGTCCTTTTTGAGAGTATGGATGGGTCT 1774827 36 100.0 39 NNNNNNNNNN .................................... CATTAGTTTTTGGAACTTTGCCGAGGAGAAAGTATTCCT 1774902 36 100.0 42 NNNNNNNNNN .................................... TTGAATACGTGAAGCACCATGGTGGTAGCTTCACAATAGGAA 1774980 36 100.0 41 NNNNNNNNNN .................................... AGTTCAAGCAGATGACATCGTCCTTCAGGACGATGGCTCAA 1775057 36 100.0 40 NNNNNNNNNN .................................... CAAAACGGTGTATGCGGTTACGAATTAAAAGGATTTGAAA 1775133 36 100.0 41 NNNNNNNNNN .................................... ATGAACTTCCATATCTATACATCTTGGACGAATGTTGTCCA 1775210 36 100.0 42 NNNNNNNNNN .................................... AAGATATTTGGTCACTTGTTGCCATACTTAAGGAGTGTAAAA 1775288 36 100.0 40 NNNNNNNNNN .................................... ATATACACTCAATTTGGACGACCGTGAGGCCGTCCTTTTT 1775364 36 100.0 36 NNNNNNNNNN .................................... GTAAAAAATGAGGGTAATTTTTGAAAAAATTGTAAG 1775436 36 100.0 40 NNNNNNNNNN .................................... TTGGAATTTTAATTCCGAGAAGGTCTTTCTCGGAAAGTGT 1775512 36 100.0 45 NNNNNNNNNN .................................... AAGGGAGCCTGTTATATACGGGCTCGACTACTTCAACAAATATAT 1775593 36 100.0 38 NNNNNNNNNN .................................... TGGTGTTGCGTACAATGTAGGTCTTGGAGAAATTCATA 1775667 36 100.0 36 NNNNNNNNNN .................................... ACGTGCCATGTGTGTACGGTAACAAGTGGGTGTTTA 1775739 36 100.0 37 NNNNNNNNNN .................................... TAATCATATGAATCCAAGAGAAGATGTAATCAAAATT 1775812 36 100.0 39 NNNNNNNNNN .................................... TGTGATTGGCTCATTGGAGCTGGACAGATCCGTTTTATG 1775887 36 100.0 40 NNNNNNNNNN .................................... CAATTTTAGAGTCTTCGAACTTGAAGACTCTGATTTGCAA 1775963 36 100.0 42 NNNNNNNNNN .................................... TTAAGACAGATAAGGAAGATTATTGATGAGAGAAAGAAAAAT 1776041 36 100.0 42 NNNNNNNNNN .................................... TTATTGATGAGAGAAAGAAAAATTGGCACGGGTTAGTAAAGA 1776119 36 100.0 40 NNNNNNNNNN .................................... AAATGTAAAATCAGCAGTTGAAAAAGTAGTCTCTGTACCA 1776195 36 100.0 41 NNNNNNNNNN .................................... CAAATTATTACTACAACAAAACCACAAGAAACAATACAGAA 1776272 36 100.0 40 NNNNNNNNNN .................................... CTGTAGAAGGCTTACAAGAAAAAATATTCTTGATATTCAA 1776348 36 100.0 44 NNNNNNNNNN .................................... TTGGTGGCGCAGCGAGCGTATTATTTGCAAAAGAAAAGTCAAAA 1776428 36 100.0 36 NNNNNNNNNN .................................... AATTTCTTCTTTAAAATAATCTTTCTCACTACTTCC 1776500 36 100.0 40 NNNNNNNNNN .................................... ATGAAAAATTATTCAAAATACATTCAAGACTGAAAAATGT 1776576 36 100.0 40 NNNNNNNNNN .................................... TATTGAAAGACAAAAATTTTATTTAATATCAAGGAAAATA 1776652 36 100.0 40 NNNNNNNNNN .................................... ATATTGATTCTGAAGTTTTTGGATTAAAGGGGGTGTTAAA 1776728 36 100.0 38 NNNNNNNNNN .................................... AGAAGGTAAATCTCTCAAACAGTTATTGAGAGAAATAC 1776802 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 95 36 40 GTCGCAATCCCTTATTCTTCAGGGAATTTTTCTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.20,-7.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [955,311] Score: 0.18/0.18 # # Final direction: R [0.18,0.78 Confidence: MEDIUM] >NC_015499 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 807036 30 100.0 38 AAGTCTAGTG .............................. CAGGACGAATATAAAGAAGATAATCTCAGACATTGAGA 807104 30 100.0 35 GACATTGAGA .............................. CGCTATTCGCTCAAGCTCACTAGTCGACATAAGCC 807169 30 100.0 35 GACATAAGCC .............................. AAAAAAGAAATAAGTTTGTCTTCTTCTGAAATATC 807234 30 100.0 37 CTGAAATATC .............................. CATTTCCATCTATACCAAGCCAGTTGTTCAGGAGTAA 807301 30 100.0 34 TCAGGAGTAA .............................. GCGTAAACTGTAATAAGTTTACACTCGTCGTCGT 807365 30 100.0 35 TCGTCGTCGT .............................. TGGGATGGTCTGGGTCCAGCCCACACCAATCCCAG 807430 30 100.0 37 CCAATCCCAG .............................. GCAGTTGGGACATGCGATGATGCCCACAATAATTTTT 807497 30 100.0 40 AATAATTTTT .............................. AATGACAATATAAATATTTTGTTTGATAGATTTGTCACAA 807567 30 100.0 37 TTTGTCACAA .............................. TGTAATCGTTAATGATATTTTCAATATCGATTTCTAA 807634 30 100.0 37 CGATTTCTAA .............................. AAAGTTCTTTTTATTTCTCTTACAAAGTCGTTATCGT 807701 30 100.0 34 TCGTTATCGT .............................. AAATTTCTTTAAATTTTTTGATGTCTTCTGTTAC 807765 30 100.0 37 CTTCTGTTAC .............................. GAAAGTATACGAAATACTTTCTGAATTGAAATTTCTC 807832 30 100.0 35 GAAATTTCTC .............................. AGCTTTTTCACAAAAATTTTCATCATTTTATCCAC 807897 30 100.0 37 TTTTATCCAC .............................. GTAGAAGAAGCTGCTTGTCTTGGTTTCAAAACAACCA 807964 30 100.0 36 AAAACAACCA .............................. TGAATAAAGTGCTTGACAGAAAAAAAGAAAATGTAA 808030 30 100.0 38 GAAAATGTAA .............................. TAATCTTGGAAGAACTGGTGGAGAAAGCACAGTTTCAG 808098 30 100.0 38 ACAGTTTCAG .............................. AGAAAGATTTACTGGTATTTCTGTTTTTGAAACTTTTT 808166 30 100.0 38 GAAACTTTTT .............................. AGGAAAGTGTAAAAGACATATAAAACATCGTCCCTATA 808234 30 100.0 38 CGTCCCTATA .............................. CTAAGAAAGAACTCCCTCAACCCCCAAGATCACTACTA 808302 30 100.0 36 ATCACTACTA .............................. CAATTTTGTTATTTGGTTGTGTTACAATTGTTTTTT 808368 30 100.0 38 ATTGTTTTTT .............................. GAACTCTATAATATAGGCGACATGACAATATATGTTGA 808436 30 100.0 40 TATATGTTGA .............................. CTAAACAAGATATTAACGATATAGCAAATGCCTTAGTCCA 808506 30 100.0 38 CCTTAGTCCA .............................. AGTTCCTTGTCAGGGCAGGAAGTGTCCTGAAAAGGAAA 808574 30 100.0 37 GAAAAGGAAA .............................. TGGGTAAAACACTTGACAAGAAAAAAAGAAAAGAATA 808641 30 100.0 34 GAAAAGAATA .............................. GTCGATAAGAAAAATTTATAAATATGAACAAAAA 808705 30 100.0 40 TGAACAAAAA .............................. TATACGTCTTCTGACCATGACTGGCATGTGCATATATATG 808775 30 100.0 36 CATATATATG .............................. AAGGTAGCAACGTCTCCATTAACAAACCCTCATTGG 808841 30 100.0 37 CCCTCATTGG .............................. GGAGCGCAGTTGTGGTTTCGAACTCTTCTTCGTCCAG 808908 30 100.0 40 CTTCGTCCAG .............................. ACGAGCGTGCAAGAAAGAAACCAAGATGGTGGTGCGGCTG 808978 30 100.0 36 GGTGCGGCTG .............................. ATGAAACTTTTAAAAAAGGAGTGATATAAATGATGA 809044 30 100.0 37 TAAATGATGA .............................. AAAGCAATGAAAGAATATAGAGAAATTTCACTTCAGA 809111 30 100.0 35 TCACTTCAGA .............................. TCGGATACTTCAAGTTATATAAAAAATTTCTTTAA 809176 30 100.0 38 ATTTCTTTAA .............................. GTTTTTGAAAAAACTGTAAAAGAACTTCTGAAAGGTTA 809244 30 100.0 35 TGAAAGGTTA .............................. TCTATTTTCTAATGCTGAAAAGGTATTTTCCCCTT 809309 30 100.0 37 TTTTCCCCTT .............................. ACAGAAGAAATGAGATTAGCATTTAGAACTATTCAAA 809376 30 100.0 37 ACTATTCAAA .............................. ATCGTTCCCTTCACTATCAGATTTTGCAAATAGTTAT 809443 30 100.0 38 AAATAGTTAT .............................. AGTCAATCTGGGTCAACAGCACCAGTTTTTTCAAATGA 809511 30 100.0 35 TTTCAAATGA .............................. TTTCAAATCCGTCACAATAGAAAGGGTCTGCTCCA 809576 30 100.0 35 GTCTGCTCCA .............................. CAACATTTTTTTCTAACATTGCAATATTTATTTTA 809641 30 100.0 37 ATTTATTTTA .............................. CAGTTTTTTCAAAAATTAATTTCATTTTACTCCTTCC 809708 30 100.0 34 TACTCCTTCC .............................. ACGAAAGAAGAGTATCAGGACCTCCTCGTCCTGA 809772 30 100.0 37 CTCGTCCTGA .............................. ACACAGGCGCAAAATTCTTCAAATAGAGGCACTTCAA 809839 30 100.0 37 GGCACTTCAA .............................. GGACTAAATCCAGCACCCGGCCTTCTAGTAGATTTTG 809906 30 100.0 36 GTAGATTTTG .............................. AAAGTCAATATAGGTACTATAAGCATATAATATATT 809972 30 100.0 37 ATAATATATT .............................. GTTGATATGTCTATATAGACTTGAAGCATATAATATA 810039 30 100.0 37 ATATAATATA .............................. CCGGCGATGTTGATGACCCGCAAAAAGAGGGGTTCGA 810106 30 100.0 37 AGGGGTTCGA .............................. AGAATACACGAGGGGGTTCTACCTTCCCTATTTTTTT 810173 30 100.0 36 CTATTTTTTT .............................. GGGATTTTGAGGGGGTGCTCTCATATGAGAGACTCC 810239 30 100.0 36 GAGAGACTCC .............................. AGTTTAATGCTGATAACCCATATACAAAAACGCTGA 810305 30 100.0 36 AAAACGCTGA .............................. AGACTTCCTTGTCCTGCTTAGGCAGGCAGAAGAAGT 810371 30 100.0 36 CAGAAGAAGT .............................. GACGATAAGAAAAACTTATAAATATAAACAAAAAAA 810437 30 100.0 38 AACAAAAAAA .............................. CGCAAGTGAACTCCCTGAAAAATATCTAAGGGGGTTCC 810505 30 100.0 39 AGGGGGTTCC .............................. TGGGATGGTCTGGGTCCAGCCCACACCAATCCCAGTAAC 810574 30 100.0 37 TCCCAGTAAC .............................. ATACTGTTATAAAGCGCTATTCACAATTACAAAGCGA 810641 30 100.0 44 TACAAAGCGA .............................. TCATTTGCGCTCCGACGAAAGTCTTTTCATCGACGAAAACCCCC 810715 30 100.0 35 GAAAACCCCC .............................. AACAATGTTGTAGGATAAGGAATTGTTCCATCCAA 810780 30 100.0 37 TTCCATCCAA .............................. TGTTTTTTTTAAATACGAGCGTTTTTTAAGCAATTAG 810847 30 100.0 34 AAGCAATTAG .............................. GCACTTTTCAAAGAACTTTTAATTATCAATACCA 810911 30 100.0 37 ATCAATACCA .............................. AAGATTTTCAGGGAGCTTTTTACGCAAGTGAACTCCC 810978 30 100.0 35 GTGAACTCCC .............................. ATAATAGATGGTTCGTGCATTTTCCCGTCCTCTAA 811043 30 100.0 36 CGTCCTCTAA .............................. CAAAGAGGGAGTACAGGCAAATCCTCGCCCTCTTGA 811109 30 100.0 36 GCCCTCTTGA .............................. TGTCTAAGCTAAGAGTAAAATCTAAACTAGCATTAG 811175 30 100.0 38 CTAGCATTAG .............................. CGTTTCCAATAGTATTTGTTCCTGCAGGTAGTGGTTGA 811243 30 100.0 37 TAGTGGTTGA .............................. TTGCAGGCGATGCACAATCAGGCATTTATAAGTCAGG 811310 30 100.0 36 ATAAGTCAGG .............................. CATATATACTACCATAAATATGAGTATATATAAACA 811376 30 100.0 37 TATATAAACA .............................. AGTAGAAAGCCATTTGATATAGGGGGGTCAATGTTTG 811443 30 100.0 35 TCAATGTTTG .............................. GCTTTACAAAAAGAAACAGACCAAACCAATTTAGC 811508 30 100.0 39 CCAATTTAGC .............................. AACTCTTCTTCATCCAGGAATTGGCCCTTTTTGAGCCAA 811577 30 100.0 39 TTTGAGCCAA .............................. CTACAATGTTTTTTGCTGCTAATCAAATGCCTTATGCAT 811646 30 100.0 37 CCTTATGCAT .............................. ATAACAGCCCTAATACATTAGACATCTACAACGATAT 811713 30 100.0 34 ACAACGATAT .............................. TATTGATATCCTAACTGAGCAAAAATATTTTTAA 811777 30 100.0 38 ATATTTTTAA .............................. TATTGCTTTTAGGGTTGTTTTTTTGTTTTTTGTTTTGT 811845 30 100.0 38 TTTGTTTTGT .............................. TCGTTCAAGATATATAGCCTAACAGATTATCTAAATGA 811913 30 100.0 35 ATCTAAATGA .............................. TATATTTTTTATTTTTTTTATTATTATTATATATA 811978 30 100.0 34 ATTATATATA .............................. TTTCAATCATGTCTCTTTGAACGTTGCCACCTAA 812042 30 100.0 36 TGCCACCTAA .............................. AGATTAAAGTTTGTAAAGGAAACGTATACAAACAAA 812108 30 100.0 36 TACAAACAAA .............................. AAGGAAAGATATGGCATTGATGTACATACTATAAGA 812174 30 100.0 37 TACTATAAGA .............................. TTTTCAGATACATCAATACCATATAACATAATTTATA 812241 30 100.0 37 ATAATTTATA .............................. CTAAAATGGGCATGGTTTTTGAGCCTTGTTTACCACC 812308 30 100.0 36 GTTTACCACC .............................. TGGGATTGTTACAGAAGTAGAAGTAAGAGGGGATGA 812374 30 100.0 40 GAGGGGATGA .............................. TGTAATTGTTTAGTGCTTGTTCGTTTTCAATTAATTTTGA 812444 30 100.0 39 TTAATTTTGA .............................. AAGAACCTGTCTTTTTCTGTTGGTTCTTGTTCTTTTTCT 812513 30 100.0 35 TTCTTTTTCT .............................. ACACTTCTTTACCATCCACTAGGATGGCAAGTTGC 812578 30 100.0 40 GGCAAGTTGC .............................. CATTTCCAGCGATACCAAGCCAATTGTTCAGGGGTAATAC 812648 30 100.0 GGGGTAATAC .............................. TTTGGTGTAT ========== ====== ====== ====== ========== ============================== 85 30 36 GTTTTTACGATACCTATGAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.00,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [148,1619] Score: 0.18/0.18 # # Final direction: F [4.87,0.18 Confidence: HIGH] >NC_015500 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 2568752 32 100.0 33 NNNNNNNNNN .C....CCT..T.................... ACGGCATAGCTGTCCGAGATGGTAAGCCATGCC 2568817 32 100.0 32 NNNNNNNNNN ................................ TAAGTAAGGCGCTTTTTTCAAGCGAATCAGAA 2568881 32 100.0 33 NNNNNNNNNN ................................ CTTGCAATGTGAATTCCCTTCAATCCTCGTAAC 2568946 32 100.0 34 NNNNNNNNNN ................................ GTGTTGCCGGAAAGATTAATACTTCCATTGTCAC 2569012 32 100.0 32 NNNNNNNNNN ................................ TAATCCGTTTTCTCTCTCCCTCAATCTGTGGA 2569076 32 100.0 32 NNNNNNNNNN ................................ GCACGGAATCCGTGCCACTGGTTGAATGTTAC 2569140 32 100.0 33 NNNNNNNNNN ................................ CCTGTGGGGTTGTCCTGATTGGGAGACTTGGCA 2569205 32 100.0 33 NNNNNNNNNN ...........T.................... ACACGGGTTTAAATTCCCCTTTACACAACAAGC 2569270 32 100.0 33 NNNNNNNNNN ................................ TTTCTCCGGGCATTCATGCTGTTACAGCGCGGC 2569335 32 100.0 35 NNNNNNNNNN ................................ CGGTACCTGGCGTCTGCAAGCGCCAAAAATCCAGA 2569402 32 100.0 33 NNNNNNNNNN ................................ GGGAGCGCTCTCCACGGTATGTTAGAGAGCGAA 2569467 32 100.0 34 NNNNNNNNNN ................................ CAAAATTATTGCAGAGCGCAACGAGCGAATCGGA 2569533 32 100.0 35 NNNNNNNNNN ................................ CGCGATGTTGGAATTATGAAAAGGAGCAAACGAAT 2569600 32 100.0 33 NNNNNNNNNN ................................ TACCCGTCAAGACCTGTTTCCCCTGTGTAAGTC 2569665 32 100.0 32 NNNNNNNNNN ................................ TGATTTATTTTTAGATCTTCTAAAATTCGTTG 2569729 32 100.0 33 NNNNNNNNNN ................................ AAAACGCCCTTGTTTTTTCCGACACACAAGGCG 2569794 32 100.0 32 NNNNNNNNNN ................................ GCGCTAAGCGTGATCAGTTAATCAAGGACGTT 2569858 32 100.0 33 NNNNNNNNNN ................................ TTTGTAGCAACCGTAACAAGTAAATCAAATTTT 2569923 32 100.0 33 NNNNNNNNNN ................................ GTTTTTAAACAATATATCGGCCGAGAGAAAAAA 2569988 32 100.0 34 NNNNNNNNNN ................................ CGCCGGCTTAACAAAACAATTGCGCGAAATTTTG 2570054 32 100.0 32 NNNNNNNNNN ................................ GACGCGATCAGTGTCGTTTCCAACGTCAAAAA 2570118 32 100.0 34 NNNNNNNNNN ................................ AGACTTTGCCGAATCCCTTGTTATCCCCGACATC 2570184 32 100.0 32 NNNNNNNNNN ................................ CTTCCGGGCTTTCGTGCTCCGTACGGCTCCCC 2570248 32 100.0 33 NNNNNNNNNN ................................ TCGTCCGCTCCGAGTGTTACCGGATAAAATTTT 2570313 32 100.0 33 NNNNNNNNNN ................................ CCCATAGAAACGATCTTGCCGGTTTTTTATGCT 2570378 32 100.0 32 NNNNNNNNNN ................................ ATCAATAAAATATACCTGCTCACCCTTGAATC 2570442 32 100.0 32 NNNNNNNNNN ................................ CCGCCGTGTAAACTCTGTTTTGACCCGATGTT 2570506 32 100.0 33 NNNNNNNNNN ................................ CTGCAAAAAATGCAACAGTCGGAACGCTTACAG 2570571 32 100.0 32 NNNNNNNNNN ................................ GTGTTTGAAGAAACAGAGATTTCGGCCGCACT 2570635 32 100.0 33 NNNNNNNNNN ................................ TTGGTTTTCTTAGACAGGCTGCTAATGTTTTAG 2570700 32 100.0 32 NNNNNNNNNN ................................ AACGGCGACTGAAAGGCATACGGAGCCGACCA 2570764 32 100.0 33 NNNNNNNNNN ................................ TACGCTCGCAACTGCTATGTATGAGGTCGTGCT 2570829 32 100.0 32 NNNNNNNNNN ................................ GTTACAAAAAAAGAAGCGGCCGCGTCCCTTGT 2570893 32 100.0 32 NNNNNNNNNN ................................ TATATCTTGCGGTGTGTAAAGAGTTGGGTGTA 2570957 32 100.0 34 NNNNNNNNNN ................................ ACTATGTCAGCGCACACGCAGACAACTAAAAAGA 2571023 32 100.0 32 NNNNNNNNNN ................................ GAGACCCGTGGACAAAGAGACAAACATGATAC 2571087 32 100.0 33 NNNNNNNNNN ................................ CTATCCGTTAATAATGCTCAATACCTTTTGGCG 2571152 32 100.0 33 NNNNNNNNNN ................................ AGCAATAAATAAACAACTTATTTTTGCTCAAAC 2571217 32 100.0 32 NNNNNNNNNN ................................ TTTGATTGACTACGTTGGCAGGTGGCAAAAGA 2571281 32 100.0 34 NNNNNNNNNN ................................ GAATTGTCTCGGGAAAATAACTGTTACAAAAAAA 2571347 32 100.0 32 NNNNNNNNNN ................................ TTGCGCCGACACTATCGCCGTCGACGGGTACC 2571411 32 100.0 33 NNNNNNNNNN ................................ CAATCCACGCGACACTCGCGACGTTATACAGCT 2571476 32 100.0 32 NNNNNNNNNN ................................ GTGCCAGTGTTGCAATCTCGGCCGCTTTTTTT 2571540 32 100.0 34 NNNNNNNNNN ................................ GGCCTTGCAGTATTTTATACTGTTAGCGTCGCCC 2571606 32 100.0 33 NNNNNNNNNN ................................ ATATTGTTTAAAAACCATTTTAGCCCTTTTTGT 2571671 32 100.0 33 NNNNNNNNNN ................................ ATCCGAGGCGGAGCATTTCAAGCGTTACCGGCA 2571736 32 100.0 32 NNNNNNNNNN ................................ TCATCGCGCGCGGGCATAAGATTCGCGGCGAT 2571800 32 100.0 32 NNNNNNNNNN ................................ TCCTCAGCATCATGCTTTTCGAGATCTGTATC 2571864 32 100.0 32 NNNNNNNNNN ................................ AAGAGAGGTGCGATACTCATCTAAGCGACCCT 2571928 32 100.0 34 NNNNNNNNNN ................................ AGCTATATCACCAATTCCAAACTCACCAATCTCA 2571994 32 100.0 33 NNNNNNNNNN ................................ TATTAATCCTGTAAACTTGAGTATAAATATGTG 2572059 32 100.0 34 NNNNNNNNNN ................................ TAGTAACGCAGGAGTGGTGTCAACCACTCCGCCG 2572125 32 100.0 34 NNNNNNNNNN ................................ CCTTGAGGGCTTACACCATCAGTCGAAGACGTCT 2572191 32 100.0 33 NNNNNNNNNN ................................ GCACGGCCTAAAAGACCTTGATAACCTAACTCC 2572256 32 100.0 33 NNNNNNNNNN ................................ TTATTGCAAGAGAAATAGATACAATAGAACCAA 2572321 32 100.0 32 NNNNNNNNNN ................................ ATTCAATCAATAGAATACGATCATCAAGGTAA 2572385 32 100.0 33 NNNNNNNNNN ................................ TTTGCAAAAAAATTAACGTCAAAACCATTATAA 2572450 32 100.0 33 NNNNNNNNNN ................................ CAAACTCTGTTAAATGATATGATTTCTAATATC 2572515 32 100.0 33 NNNNNNNNNN ................................ CAGGACAATTAGTCAATGCATTTAGATCAAGAA 2572580 32 100.0 33 NNNNNNNNNN ................................ AGCTGATCTTTAATTTTTCGCATATCCATAAAT 2572645 32 100.0 32 NNNNNNNNNN ................................ TTTAATCATATCAAACACTTTTTGAATAGTCT 2572709 32 100.0 33 NNNNNNNNNN ................................ AATTTTATTTTAAAATATTCATATTGTCTAGAA 2572774 32 100.0 32 NNNNNNNNNN ................................ ACAACTCAGAGATTTAATAATATCATTATTGA 2572838 32 100.0 32 NNNNNNNNNN ................................ TTATTGTTTGGAGAGCAGGAACTATAGTAATT 2572902 32 100.0 33 NNNNNNNNNN ................................ TTTATTTGTCGGGCAATAATAATTTTCTCAACG 2572967 32 100.0 33 NNNNNNNNNN ................................ TTAACGTGAGAAATAAAATAACTATATATTTAT 2573032 32 100.0 32 NNNNNNNNNN ................................ ATAAACAACAAGAAAATAAAACTTGGATTGAT 2573096 32 100.0 34 NNNNNNNNNN ................................ ATATGTATTTAGACATATGTATCCGAAATCTCAA 2573162 32 100.0 33 NNNNNNNNNN ................................ TTGTCAAGTATCTACTTGAGTATAAAAAATTTA 2573227 32 100.0 32 NNNNNNNNNN ................................ ATGATTGAGGTGCTAGTATGAGTTTTGAAATT 2573291 32 100.0 32 NNNNNNNNNN ................................ TTGAATAAAGAGATGGTAAGTTATTGTTTATA 2573355 32 100.0 32 NNNNNNNNNN ................................ CAATCTCTTCAAAATCATTTCCTTTAATTATA 2573419 32 100.0 33 NNNNNNNNNN ................................ GTTGCTTAAAAATTGAAAACCTTAGGCTTCTTG 2573484 32 100.0 32 NNNNNNNNNN ................................ TAATTGTTAACCCCGAAAGCACGGCAGACCCT 2573548 32 100.0 32 NNNNNNNNNN ................................ AAATTGGACGACGGCACAGTAAAGCTGGTTGT 2573612 32 100.0 33 NNNNNNNNNN ................................ TAATGCGCATATCTCGCCGATTGTCGCATTTTT 2573677 32 100.0 33 NNNNNNNNNN ................................ CGCACCCGTCTGCGTAATCAATTTAACTGGAGT 2573742 32 100.0 33 NNNNNNNNNN ................................ TATAGATTTGAACGCCCGATTATATACCGGAGC 2573807 32 100.0 33 NNNNNNNNNN ................................ AGCAAGTACAAAGAGCCGCTGCCGCCGCAGGTT 2573872 32 100.0 36 NNNNNNNNNN ................................ AATTATTTTCATTGTTTAATTCCAATTAACTCTTGT 2573940 32 100.0 32 NNNNNNNNNN ................................ TCATTAAACCAATCATTTAATTTTCTGTTTTT 2574004 32 100.0 33 NNNNNNNNNN ................................ ATATTTTTGGTGCAGGTGGAACCCCAATGGGAA 2574069 32 100.0 33 NNNNNNNNNN ................................ ATTCAAAAAGAGGACTTCATATCTGATGTATAT 2574134 32 100.0 34 NNNNNNNNNN ................................ AGCATAGCGGGTTCGTTTATGATATAGAGCTTGA 2574200 32 100.0 35 NNNNNNNNNN ................................ TTTTTTAATTGAGATTTAATGTTATTTTATATAGA 2574267 32 100.0 32 NNNNNNNNNN ................................ CTTTTATGAAAAAGTTCGTTTCTAATGTCTGT 2574331 32 100.0 34 NNNNNNNNNN ................................ CGTACTGCCTGCAACACGGCACAACTATGTAGAC 2574397 32 100.0 32 NNNNNNNNNN ................................ TAATGCATAGAATTGGTGGGTTAACAATGGCG 2574461 32 100.0 32 NNNNNNNNNN ................................ AACAGAATTTGAGTTCAATAGTCATTTATTTA 2574525 32 100.0 33 NNNNNNNNNN ................................ AACAAAGCAAGGATACACGTAATTGAGAACGAA 2574590 32 100.0 33 NNNNNNNNNN ................................ ATAGTTCGTAGTGATGGTGTGAAAATCAAATGC 2574655 32 100.0 32 NNNNNNNNNN ................................ TATGCCATATAGTATTCAAAGGAAACAAAAAT 2574719 32 100.0 33 NNNNNNNNNN ................................ TTTAAGTATGAATATTTAAACCACAAGATTATT 2574784 32 100.0 34 NNNNNNNNNN ................................ TTCAATATCCTTATTAATAGATTCAGTATCGTGA 2574850 32 100.0 32 NNNNNNNNNN ................................ GACTGTATTAACGACGACATGCCGCAGGTCGT 2574914 32 100.0 33 NNNNNNNNNN ................................ ACATCGCTTTTCCTGCACGGCCGACCCATGTCG 2574979 32 100.0 32 NNNNNNNNNN ................................ AAACCTCAGAAATCACAACAGGCTGACGCGTG 2575043 32 100.0 34 NNNNNNNNNN ................................ AGCAGCGGCGGGGTTCGTTTCGCTTTCCTAGTCT 2575109 32 100.0 32 NNNNNNNNNN ................................ ATTTTGAATCGCTCAAAGGTGTAAAAATCGAC 2575173 32 100.0 35 NNNNNNNNNN ................................ TTCCCAGTCTTCGGCTGATCCGGCAAATTCACAGA 2575240 32 100.0 32 NNNNNNNNNN ................................ AAGGGTGATTTTGAAATTTCCGCGGGAAAAGC 2575304 32 100.0 32 NNNNNNNNNN ................................ GAGATATCACGGAATTCGCAAAATGGGAGATA 2575368 32 100.0 32 NNNNNNNNNN ................................ CGTCAGGCGGTCAAACGTCCGACATAATCAAA 2575432 32 100.0 34 NNNNNNNNNN ................................ GAACGTGATAAGGCCGATACCCGGAGCGGCCTTA 2575498 32 100.0 33 NNNNNNNNNN ................................ ATTATTTTGCCTATACGTAACCCCGTCAATTTT 2575563 32 100.0 34 NNNNNNNNNN ................................ AGCGCTGCGGCATGGCTTTTGACCTGTCATCAAT 2575629 32 100.0 33 NNNNNNNNNN ................................ GTATCGTTCGGCGTCGTTTTCCCGTGCTACACC 2575694 32 100.0 32 NNNNNNNNNN ................................ CGCCCATTAACACGTCTTTTTTTAAAATTGCA 2575758 32 100.0 32 NNNNNNNNNN ................................ CCTTGCGGACCGTGGCGAGCGGGTCGTGGATG 2575822 32 100.0 32 NNNNNNNNNN ................................ TCGGCATGGAAATTGTAAAAAAAACAATCACA 2575886 32 100.0 35 NNNNNNNNNN ................................ CCGAATTTTTGGCGGGCAAAATCCCCGATAACATC 2575953 32 100.0 33 NNNNNNNNNN ................................ AAAAATCGATTTCCCTTTTAGCCCGTCGTAACC 2576018 32 100.0 34 NNNNNNNNNN ................................ TAGAGTAATTTTCAACGGCGCGGTAGATACAAAA 2576084 32 100.0 33 NNNNNNNNNN ................................ TCAAAACTTGAACGCGCAATATCAATTATCTTT 2576149 32 100.0 34 NNNNNNNNNN ................................ ATAACATCCAAACCGGTGCAATTGCCGCGCTCGA 2576215 32 100.0 34 NNNNNNNNNN ................................ TGCTCCGATTTGGGACGCTCGCGTACTTCTCCCG 2576281 32 100.0 33 NNNNNNNNNN ................................ GCCGGTTCGGTATCATTATACGCACCCGACGGA 2576346 32 100.0 33 NNNNNNNNNN ................................ CCGGCATCAATACAAAGCGAGAACGGCAGACCC 2576411 32 100.0 32 NNNNNNNNNN ................................ CCGAAATGCTCCCGTATGGAATCGTATTTGAC 2576475 32 100.0 32 NNNNNNNNNN ................................ TTAAAAAAAAGATAAACGAAATGACGGTTGAA 2576539 32 100.0 33 NNNNNNNNNN ................................ GAGAAATTGCGACAATAACAGCGCCATTTATGC 2576604 32 100.0 33 NNNNNNNNNN ................................ AACATTCGGCGGCGTTCTTGTTTTGACAATCCT 2576669 32 100.0 32 NNNNNNNNNN ................................ CTGGACGTGGTGACAGTTCGGGGTCGGGAGGT 2576733 32 100.0 32 NNNNNNNNNN ................................ TTTTAGTGCTAGATTTTCCCAACATACGTTTT 2576797 32 100.0 33 NNNNNNNNNN ................................ GTGTCGCGCGTCGCAGTTCCCACAGTCAGACGT 2576862 32 100.0 33 NNNNNNNNNN ................................ TCGGCGGTGAGTCCTTTGAAATATTCCTCACCT 2576927 32 100.0 33 NNNNNNNNNN ................................ CCGGAAGAAAAGGAGATTGAACAAATGGCAGAA 2576992 32 100.0 1 NNNNNNNNNN ................................ NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 128 32 32 GTTTCAATCCACGCTCCCGTGAAGGGAGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [7,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.60,-6.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [45.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [294,221] Score: 0/0.18 # # Final direction: R [0.37,5.55 Confidence: HIGH] >NC_015500 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 2585593 32 100.0 33 TACTCGTAGA ................................ CAATTAAGCCGGACATTCCAGACCTCACCTATG 2585658 32 100.0 32 CTCACCTATG ................................ TTACTGGTGAAATGGCAATCGGTAACGACGGT 2585722 32 100.0 34 TAACGACGGT ................................ GCTGTAGTCGTCTCCGGCGTCAATTACTACGCGG 2585788 32 100.0 33 TACTACGCGG ................................ TTTTTGTAATTCGCTATTGATAATTGCAATGTC 2585853 32 100.0 33 TTGCAATGTC ................................ ATTTCAGCTGCGGTTGGAATAGTCGGCATTGCC 2585918 32 100.0 33 CGGCATTGCC ................................ GAAGTCGTATCCGTGGTTTTGTCGGAAACGGTT 2585983 32 100.0 32 GGAAACGGTT ................................ TTACTGCCGGCATTGTCCTCATGGTAAAACAT 2586047 32 100.0 34 GGTAAAACAT ................................ TTGTAAAGTTTGCACCGATAATACTTGCAGTAGT 2586113 32 100.0 33 TTGCAGTAGT ................................ CGCCCCCCTTTGTATTTCGGAAAAATATCGCGC 2586178 32 100.0 32 AATATCGCGC ................................ TCCGTTGTTTGCGGGATATTGGGCGATTGTAT 2586242 32 100.0 34 GCGATTGTAT ................................ TTGCGAACGAGAATACAGGAAACGCAGTATTGCC 2586308 32 100.0 33 CAGTATTGCC ................................ GTCGTTAAAAGTATAATCCGATGTATGAATAAC 2586373 32 100.0 33 TATGAATAAC ................................ TACAGCTGGCGAAAGTTCGGGCTTGTTTGCAAT 2586438 32 100.0 32 TGTTTGCAAT ................................ TATCATCCTGGTTGGGCTTGGTGCTTTTGTGC 2586502 32 100.0 34 GCTTTTGTGC ................................ AATTTATACAATGTTAGACGGTGCCGGGATGATG 2586568 32 100.0 33 CGGGATGATG ................................ TGCTGGCAATAGGTATATACCGCGCCCAGTGCT 2586633 32 100.0 32 GCCCAGTGCT ................................ ATTTTTCAGGCTCCTATCCGCAAACAAGCGTT 2586697 32 100.0 33 AACAAGCGTT ................................ GCGCCTTTAAGAAACGGAAGCTGTGTTATTCGC 2586762 32 100.0 33 TGTTATTCGC ................................ AGTTTGGCGACATCCCGGAATATCAAACAAACC 2586827 32 100.0 33 CAAACAAACC ................................ CCAGTTGTCTTGTTTTTTGACACTGCGATTGCT 2586892 32 100.0 32 TGCGATTGCT ................................ ATGTCGCGCCCGAACTCTACGTACGGCACGCC 2586956 32 100.0 33 ACGGCACGCC ................................ CAGTTTTTTGTTTAAATTCGTTTAAATCTTTTG 2587021 32 100.0 33 AAATCTTTTG ................................ ATTTCTATATGAAACCGTTGAACTTTGCGATAT 2587086 32 100.0 33 TTTGCGATAT ................................ TTGCAATGTCAATAGTTAAATTCTCAATCCAGT 2587151 32 100.0 33 TCAATCCAGT ................................ GTTTCTTATTGAGCGATATAATAAGAAAAACGT 2587216 32 100.0 34 AGAAAAACGT ................................ ATATATTCATTAAAACTAATGTCATGCGATAACT 2587282 32 100.0 34 TGCGATAACT ................................ TCATCCATATTTAAATAAAAATTTCCAGTGAAAA 2587348 32 100.0 33 CCAGTGAAAA ................................ ATCAATAAATATAGCTTTATAATCTGCTCTCAA 2587413 32 100.0 33 CTGCTCTCAA ................................ ACACCTAATACAACTTTTGAGTTTACATAGCCA 2587478 32 100.0 33 TACATAGCCA ................................ TGATATGCAGTTACAATATGTTTCGTTGCAGAA 2587543 32 100.0 34 CGTTGCAGAA ................................ TTTTGGAATAGAATTTTTAGAAGATAGCAATATT 2587609 32 100.0 32 TAGCAATATT ................................ TGTTTTTAATTTATCAAATGTCAGGAAGATGA 2587673 32 100.0 32 AGGAAGATGA ................................ GTATGGGTGCTCTTAACGATACTTATCCGTGT 2587737 32 100.0 34 TTATCCGTGT ................................ AATTTTGAAAAGCAGCAAAGAAATCAGCCGATTA 2587803 32 100.0 34 CAGCCGATTA ................................ AGTAAAAAAATGTGCGAAGCGCTGTACCCTGTAT 2587869 32 100.0 33 TACCCTGTAT ................................ GTTGAATACACCTCTATAACAAATGAACCTAAA 2587934 32 100.0 33 TGAACCTAAA ................................ CTTTTGTATCGCCTACTTACGCAGTGGCAGCGT 2587999 32 100.0 33 GTGGCAGCGT ................................ CGGATAAAACGGATAAACCGGAAACGGACGATC 2588064 32 100.0 32 ACGGACGATC ................................ AGTCCAACATGGACGGTATGGGAGAACGTGCC 2588128 32 100.0 32 AGAACGTGCC ................................ GCTCCCCAGTACTGGGTGCCTGCTCCGGTTCC 2588192 32 100.0 32 CTCCGGTTCC ................................ CGCGTGGGTCGGTCGCGCCGGAAAAGCGATGT 2588256 32 100.0 34 AAAGCGATGT ................................ CCTCATATTAGCCCGGTTTTGTGTATTGTATTAG 2588322 32 100.0 35 ATTGTATTAG ................................ AAAATTTTATCCGGTAACACTCGGAGCGGACGAAC 2588389 32 100.0 32 GCGGACGAAC ................................ AAACACATTTTTGCCGTTGTGTTTTTGTTCCA 2588453 32 100.0 33 TTTTGTTCCA ................................ ATAAGCTTCAAGCAGTCACCGCCTTCCAGTTTG 2588518 32 100.0 32 TTCCAGTTTG ................................ CAGAAGAAACGGTTAAAGAAAGATACGAAAGC 2588582 32 100.0 33 ATACGAAAGC ................................ GGCGCAAGGAAGGGGCGTTCTCGACGCTCTCAA 2588647 32 100.0 33 ACGCTCTCAA ................................ TACCGATCTGCGGCATTACCGATATAAAAAAAT 2588712 32 100.0 34 ATAAAAAAAT ................................ TTTTGTATCGCCTACTTACGCAGTGGCAGCGTGT 2588778 32 100.0 33 GGCAGCGTGT ................................ TGTTTTTTTTCATTTTTAAAAGCTGGTCAAAAT 2588843 32 100.0 33 TGGTCAAAAT ................................ AGCTCTTGGTATCTGGAAGCGAACGGAAATAAT 2588908 32 100.0 32 CGGAAATAAT ................................ CTTGTACGTACACGCAGATTCTTGCCGTTAAC 2588972 32 100.0 32 TGCCGTTAAC ................................ AATACCGATACGATAATAACCAACCATACACG 2589036 32 100.0 33 ACCATACACG ................................ AACGTTGCCGTGCCAATTTCTAACTGCTACTTT 2589101 32 100.0 33 CTGCTACTTT ................................ TACGACGACTTCTAAACCTCATTTAAATACCTC 2589166 32 100.0 34 TAAATACCTC ................................ CGCTCTCCCGGCGGGAAAGTTGACCCGTCGGAAA 2589232 32 100.0 34 CCGTCGGAAA ................................ TCGATGTAACGATCCTCAAGTTTTTTCTTTTGTT 2589298 32 100.0 34 TTCTTTTGTT ................................ ATTTTTGAGACAACGTATCGAGGCTCAATTGGAT 2589364 32 100.0 33 TCAATTGGAT ................................ CAGTCTGAACTTTATTTTACAGGTTTTGCGGCT 2589429 32 100.0 33 TTTTGCGGCT ................................ CGCAGTTCAACGCGCTAATAATCCGCAAGAACG 2589494 32 100.0 33 CGCAAGAACG ................................ ATTGAGCAGCCCGTTTTATAAAATCACGGGAAC 2589559 32 100.0 32 TCACGGGAAC ................................ ATAAAAAAGCAGATATTCTCGAAGCCATAAAA 2589623 32 100.0 33 AGCCATAAAA ................................ TACGGCGTAACTGATGAAAATGCCGTTGCAAGT 2589688 32 100.0 32 CGTTGCAAGT ................................ GTTTACCCCGCAGAAACGGAAGAGGAATTGTA 2589752 32 100.0 34 AGGAATTGTA ................................ ACAGGTTATCATCGTCAGCCTCCGTATCGCGGTC 2589818 32 100.0 32 TATCGCGGTC ................................ TTCGATTTCCGACAAGTCGCCGTTAAGATCCC 2589882 32 100.0 32 TTAAGATCCC ................................ GGAAAACTCGGTACTGCTCCTTGTCTCTTACT 2589946 32 100.0 34 GTCTCTTACT ................................ GTCAGGGTCAACTTGGTCAGAGTTGATTAAAGAG 2590012 32 100.0 GATTAAAGAG ................................ GCTGTACAAA ========== ====== ====== ====== ========== ================================ 69 32 32 GTCGCTCCCTTCACGGGAGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [6,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.10,-5.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [525,593] Score: 0/0.18 # # Final direction: F [5.14,0.37 Confidence: HIGH] >NC_015500 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================= ====== 3050616 17 94.1 67 GGGATTTTAT ................C ATATATGCATATACGGGAGAAACGTTTTACATATTTTTTGTAAAAGCCGTTAATATCAGAACTTATC 3050700 17 100.0 47 AGAACTTATC ................. CCGAGCAAGATGCGAGAGTTTTTACCCAAAAAAAAGATTCACAGAAA 3050764 17 100.0 47 TTCACAGAAA ................. GAAAGCAACACAGAGAGGAGCGTTTCAGAAAAAAGATTTCTCACATA 3050828 17 100.0 TTCTCACATA ................. TAAAAAGAAAT ========== ====== ====== ====== ========== ================= 4 17 53 TGTTTCACGTGAAACAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.71%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [215,223] Score: 0/0.18 # # Final direction: R [0,0.41 Confidence: MEDIUM] >NC_015501 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================= ====== 1151851 33 100.0 35 NNNNNNNNNN ................................. TGTTGGTGAGAGTTACGGTAAGTCAGTATCAGTTA 1151919 33 100.0 34 NNNNNNNNNN ................................. ATTACTCAAAGAAAACTGAGAGGATAAAGCATCA 1151986 33 100.0 35 NNNNNNNNNN ................................. ACTAATAGAAGATCTATAAGCTATGCCTAATCTAA 1152054 33 100.0 34 NNNNNNNNNN ................................. ACTGGCTGGACTTTAGCAAGCAAGTTATCCACAT 1152121 33 100.0 35 NNNNNNNNNN ................................. CATCACGAAACTCATTAATGATTAACTTAACTAAT 1152189 33 100.0 36 NNNNNNNNNN ................................. ATTCTGAGGTGCCTTATGATACTGCTAAGCCTATGG 1152258 33 100.0 35 NNNNNNNNNN ................................. GTTGGTCGTTGTATTGGGTTGTATATACTTGGTAT 1152326 33 100.0 33 NNNNNNNNNN ................................. TGCAGGTATACGGACTATCCAACAACAACCACA 1152392 33 100.0 34 NNNNNNNNNN ................................. ACCCATAAATAAAAACTTAGGATCCTTAACCTGA 1152459 33 100.0 34 NNNNNNNNNN ................................. TCAGGCGTTGCGAGTGCCGTCTCTTGCTCCTCTT 1152526 33 100.0 34 NNNNNNNNNN ................................. GTGCCGAGGAAGTTTAGCAAGACAACCAGCGTGG 1152593 33 100.0 35 NNNNNNNNNN ................................. CCTCCTCGTCTATAACTATCGTAATTTGCACGATG 1152661 33 100.0 33 NNNNNNNNNN ................................. TTGTAGGTGCTTGTGTTGCCACCGCTTACGAAG 1152727 33 100.0 34 NNNNNNNNNN ................................. TCTATTTGTCTTGCTCATCACTGCTGGTTGTTTT 1152794 33 100.0 35 NNNNNNNNNN ................................. GCAAAAAAGTACCTCGCAAAGTGGTTGAAACAAGT 1152862 33 100.0 35 NNNNNNNNNN ................................. GAATGAAAGATTCTCAGAAATTCTTTGCGAAAACG 1152930 33 100.0 33 NNNNNNNNNN ................................. TTGAGGCTGTTGAGGTCTATTGTATATACCTCG 1152996 33 100.0 35 NNNNNNNNNN ................................. ATCTTAAGAAGCTTGTGCCTGATATATGGCGTGAA 1153064 33 100.0 33 NNNNNNNNNN ................................. ACAGGACCAAAAACAGCATCCCAATAAACAGAC 1153130 33 100.0 35 NNNNNNNNNN ................................. ATGTAATTAACGTACTTTCCACCAACACGGAGTAA 1153198 33 100.0 35 NNNNNNNNNN ................................. CAAAACTAAGGCCGAAGAGCTTACGAAGATGCACA 1153266 33 100.0 35 NNNNNNNNNN ................................. ATTATCAGGACGAGGCAAACCTGCACTTTCGAAAA 1153334 33 100.0 33 NNNNNNNNNN ................................. GGTTATGTGCCTCGCTACGATGAATATAGATAC 1153400 33 100.0 35 NNNNNNNNNN ................................. GGTCAACATCTGACACATTAAGCACATAAGAGTCA 1153468 33 100.0 35 NNNNNNNNNN ................................. AGACTTACGGTCTTGTATGTAGCGCGCATTCTCGT 1153536 33 100.0 35 NNNNNNNNNN ................................. ATTTAAACAAGTGTGGGGGGGGTACACGGCTGTGA 1153604 33 100.0 33 NNNNNNNNNN ................................. CAGATGGTACAGACGATTGTCGGTGCGATGCTG 1153670 33 100.0 35 NNNNNNNNNN ................................. AGTGGAAAGCTTTATATTTGCACTACAGCAACATA 1153738 33 100.0 34 NNNNNNNNNN ................................. CCGTCTGAGAGGTCGGTGCGTCTTGTGGTCTCGC 1153805 33 100.0 1 NNNNNNNNNN ..............................CGA NNNNNNNNNN ========== ====== ====== ====== ========== ================================= 30 33 34 GTCGCACCCCGCACGGGGTGCGTGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [7,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-8.10,-8.10] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [58.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [200,316] Score: 0/0.18 # # Final direction: F [5.55,0 Confidence: HIGH] >NC_015510 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 611640 30 100.0 36 TTTGTGACGG .............................. TCCTTGGATGTGAGGCGGTGCGGGTGGTCTTCATTC 611706 30 100.0 37 GTCTTCATTC .............................. TATCAGAGGTGATTCCGTCGTAATGCGGGGTTATCAT 611773 30 100.0 36 GGGTTATCAT .............................. ATAGCGAAGAGGCAACAGAGTTGCAGGTATCAATTG 611839 30 100.0 36 GTATCAATTG .............................. AAGTCGAACACTTAAATGAAGCTCATAGATCGTATA 611905 30 100.0 36 AGATCGTATA .............................. GGTCTTTTCGTCAAACGGGTCATCCTCTTCATCGGC 611971 30 100.0 36 CTTCATCGGC .............................. AAGCCCAAAACAAAAGGAATGGGAAGCACTGGTTAT 612037 30 100.0 36 CACTGGTTAT .............................. TGCAACGCAAAACTCATGCCCTGGTTGATAAACGCC 612103 30 100.0 37 GATAAACGCC .............................. GTAGTACCCGCCGCCGTCCTTGTCGAGGTAGGCATAG 612170 30 100.0 36 GTAGGCATAG .............................. TGAATTTTGCGTTTAGACGTGAGCTGATGCCGTATG 612236 30 100.0 36 ATGCCGTATG .............................. TGCAGAGGATGAAGCGAGGAAAGAGCAAGAACGGTT 612302 30 100.0 36 AAGAACGGTT .............................. TATGTCCGCCGTAGTCCTTCCCGATTGCCAGATCGG 612368 30 100.0 38 GCCAGATCGG .............................. CAATAACCATTCCTGTCGTTGACATCGCCCTCAGCAGC 612436 30 100.0 36 CCTCAGCAGC .............................. CGGGTTAATGTGTCGTACAATTCCCGGTTGGGTTGA 612502 30 100.0 36 GTTGGGTTGA .............................. TTTACACATGCGGCAAACATTTTTCCACACTTGCAA 612568 30 100.0 36 ACACTTGCAA .............................. AGGCGAACAACGCCTTTTTTTGTCCAGAAAATCGAA 612634 30 100.0 36 GAAAATCGAA .............................. TTTTTTTGATACTGGATAATCCACTCGAGCAATCCC 612700 30 100.0 36 GAGCAATCCC .............................. TTCGTTGTCTTGGGTGTCAAAAACAAGGTCCGACAC 612766 30 100.0 36 GGTCCGACAC .............................. CAAGTGGCACCACCGCCACCCAAAACCGACCTGATG 612832 30 100.0 36 CGACCTGATG .............................. TCAGTGGCGGGACAGGCACAAGTATCAACGTGTCTG 612898 30 100.0 37 AACGTGTCTG .............................. GAATTAGACATCCGGAGCGACCGACACGAAATCGCAG 612965 30 100.0 36 GAAATCGCAG .............................. ATAGGGTTAGCAATGCAAGCAGCAAGCCAGGGAGTA 613031 30 100.0 36 CCAGGGAGTA .............................. CACAAGTAATGATCAATACATTAGAACACGGACTAT 613097 30 100.0 36 CACGGACTAT .............................. CTGTTACCGGGTTCATCAATAGAACTAGAGTACACA 613163 30 100.0 36 AGAGTACACA .............................. CAGCTAACAGGAACGTACTGTACTCTGCTATCTTTC 613229 30 100.0 36 GCTATCTTTC .............................. AGTACACTAATGGTGATAGCGTCATTAACGCCCAGG 613295 30 100.0 36 AACGCCCAGG .............................. TGCTTCGTGGCGGTAGCTGTCGATCTCCGGGTGAAA 613361 30 100.0 37 CCGGGTGAAA .............................. TTACAACGAACATATTAAAACCTGCCCACCAGCGCTC 613428 30 100.0 37 ACCAGCGCTC .............................. TCAGCCATGTATCCTAAACCTTCAGTCAATTTGCCCG 613495 30 100.0 36 AATTTGCCCG .............................. CCATATCCCAGATGGTGAACAACAACTGGGCGCAAA 613561 30 100.0 36 TGGGCGCAAA .............................. TTGAGTGGAGTGATGACCCTCGGCACTTGTTGCCTG 613627 30 100.0 35 TTGTTGCCTG .............................. TGAATTCGCCTTCAGTTAGTCCATCGTGGTGCATG 613692 30 100.0 36 GTGGTGCATG .............................. ATGTTGAAGGTCTCGCGCTGGTCGCTGCCGGATCCG 613758 30 100.0 36 GCCGGATCCG .............................. AATTAAATTTTAAGGTTTTAAAAATCACTTATCAAA 613824 30 100.0 36 ACTTATCAAA .............................. TCACCAAGAACCGCCAACCCCAATATTTTATCCGCG 613890 30 100.0 34 TTTATCCGCG .............................. ATAATACCCCCTTCTTTTTCTGCGCAGGCAGTAG 613954 30 100.0 36 CAGGCAGTAG .............................. TCGGTGTTGTCCAGGTAAGCGGACAAGGAAACCGAG 614020 30 100.0 36 GGAAACCGAG .............................. ATTAGCGGCGTCTTCTATCATGAAAAAATAGACTAC 614086 30 100.0 36 AATAGACTAC .............................. AAGGTTACTATGCTCAGTAAAAAACACAAAATGAAT 614152 30 100.0 37 CAAAATGAAT .............................. TGTTTAGCCCCTTTCCCATCAATTCTGCTCAAGCATC 614219 30 100.0 36 CTCAAGCATC .............................. TTTGGGGCCGCGCTCCTCCACCATTTGCCCGTGTTG 614285 30 100.0 35 GCCCGTGTTG .............................. ACGTAAAGCACTACGTTAAAACCCCTAAGCAGTAG 614350 30 100.0 36 TAAGCAGTAG .............................. CGTAAAAATAGAAGCGGATAAAAGCCTCTAAGTTTT 614416 30 100.0 36 TCTAAGTTTT .............................. GAAGCTGAGCAAGGAAATTCAATTAGTTATTACACA 614482 30 100.0 37 TTATTACACA .............................. TTTAATACGGGCTATTCGCAGCCCTGCAATAATCTCC 614549 30 100.0 36 AATAATCTCC .............................. TAATTAGATAGCCTACGACTATAACGATAAGGAAAA 614615 30 100.0 36 ATAAGGAAAA .............................. TCTTGTTCGTCAGCTTGAATGGGTTGGGTAAACCAA 614681 30 100.0 36 GGTAAACCAA .............................. TCGAATTAGCAGCATTGGCTACACTGCTGGCCAAAA 614747 30 100.0 36 CTGGCCAAAA .............................. TTTTTTCAAAGCCCGACAGAGCGGTTGTCGGATTTG 614813 30 100.0 36 GTCGGATTTG .............................. TAAATTACACCGATCGAAACGTTACCGTTCGATCCT 614879 30 100.0 36 GTTCGATCCT .............................. AGATAAGGAAGTATTCCCTAAGTCTCTTCTATTAGT 614945 30 100.0 37 TTCTATTAGT .............................. AGTTTAAAGGGGCGTAGCTTAAATATAAGGGGAAACG 615012 30 100.0 36 AGGGGAAACG .............................. TCATGATGGGGGCAGCCTTTTCCAAAGGTCATTTGA 615078 30 100.0 36 GGTCATTTGA .............................. TGAGTAGGTGGTTTCGCCCGATAAAGTCTCGCTCTT 615144 30 100.0 35 TCTCGCTCTT .............................. TCAGCAATGACGTGACATTCTCGTGTATTCATACC 615209 30 100.0 36 TATTCATACC .............................. TGCAAAAAGACAAAATACTGAGCGACTTCGCCGGGC 615275 30 100.0 36 TTCGCCGGGC .............................. AGGCTTCCACCCAGGGCGGTGAGCGCCCCGCCGATG 615341 30 100.0 36 CCCGCCGATG .............................. TCACTCAGAGGAGTTGAATTGTAGTCGGAGATAGTT 615407 30 100.0 36 GGAGATAGTT .............................. ACACGTATAAGCGTCAAGCTGCTCCAGCGAAACCGC 615473 30 100.0 36 GCGAAACCGC .............................. CTAGGAGATGGCTTGGAATTAAGTTGGTCTACCGTT 615539 30 100.0 36 GTCTACCGTT .............................. CCCGCTGAAAAAGCCAGGGTTTCCCCGTTGGTGATG 615605 30 100.0 36 GTTGGTGATG .............................. ACAAGACATCGGGTTTACTGAAACGGGGGATTTTAA 615671 30 100.0 36 GGGATTTTAA .............................. GCAATAGCAACGCCGGCGATACTGTGATTAATGTGG 615737 30 100.0 36 ATTAATGTGG .............................. CCAGACACGGACAGGGTATTGGAGGACAGCGTCAGC 615803 30 100.0 37 CAGCGTCAGC .............................. AAGGTTATACCAAGACGGCAGCAACCAAAACACCGCC 615870 30 100.0 36 AAACACCGCC .............................. GTGGGTGATCTTGTATTCGTCCTCGGGAATTTGATA 615936 30 100.0 36 GAATTTGATA .............................. TGCACTTTTCAGCAGCGTATTTTAGTTGAAGGTCGT 616002 30 100.0 36 TGAAGGTCGT .............................. GTATTCAGGGGAGGCATGATTAAAGATGTGATCTTC 616068 30 100.0 36 TGTGATCTTC .............................. GCGTTCAATCAAATCGGATTCCAAAACGACATTAAC 616134 30 100.0 36 CGACATTAAC .............................. AATCCAGGAGATGGAGAGGCTAAAAGTGATGATAAT 616200 30 100.0 36 TGATGATAAT .............................. TTGTAAATGCCAACAGCATCATAAAAATAAGATTGC 616266 30 100.0 36 ATAAGATTGC .............................. CGAAGGAACCCAAACCTACATTTCCGCGTGGATCGA 616332 30 100.0 36 CGTGGATCGA .............................. CATTTCCCCCTGGTCTAATTTGTGTAGCCATAGCGC 616398 30 100.0 37 GCCATAGCGC .............................. AACAAGAAGAACGGCGGAAACGTGCCTCACATGCACG 616465 30 100.0 36 CACATGCACG .............................. GCTTTCGGATGGTGCGGGCTGCGTTGAAGAATCCGA 616531 30 100.0 36 AAGAATCCGA .............................. GTGATCATTGCCGTCAAAATATTCTGACTGAATTTC 616597 30 100.0 36 ACTGAATTTC .............................. ACATTTCGGAGAAGCTGGCCACGGTATTGCTGCCCG 616663 30 100.0 37 TTGCTGCCCG .............................. GCGCCTACGCAGCCACCGTGGCCGAGCTGTATGCGAA 616730 30 100.0 37 TGTATGCGAA .............................. AAGTCAAAGCTTTTTCGCCTAAAAAGCCTTTCAAAAC 616797 30 100.0 35 CTTTCAAAAC .............................. GTGGAAAGAAATTGCACCCAAAAAATGGGTATCCG 616862 30 100.0 36 TGGGTATCCG .............................. TGAGAACAGCGTTTCAAGATAGAGCAATGGTCTGCC 616928 30 100.0 36 ATGGTCTGCC .............................. TTGTTGATGATGTAAAAAACAACCGCATTGATAACT 616994 30 100.0 36 ATTGATAACT .............................. AAATATGTCGCGTTCCTTTACAGTTATTCTCATTTC 617060 30 100.0 36 TTCTCATTTC .............................. CTAGTTCATGGGCGCGAGCTTCGCGTTCTTTCAAGC 617126 30 100.0 36 TCTTTCAAGC .............................. GGGGCAATTCCCTTGGTTCCATCCAGCGCTGGTGAA 617192 30 100.0 36 CGCTGGTGAA .............................. CAGAATCATGCGCTCCAGTGCGTTGTAGGCCTGGGT 617258 30 100.0 36 AGGCCTGGGT .............................. ATGTTGAATATTGTCCGCTTCTTGAATGAATATAGG 617324 30 100.0 36 TGAATATAGG .............................. AAATACAACCCGTACCGGTGCTACTCGGGCTACCGG 617390 30 100.0 36 GGGCTACCGG .............................. AGGATTAAGCGGAATAGGTATAGCACCGACGGACGA 617456 30 100.0 36 CGACGGACGA .............................. CTTTCATCAATCCTGCCCTCACTTCTTGCGAGTTCT 617522 30 100.0 36 TGCGAGTTCT .............................. ATGCTGCTGTCTCTTGTTCCTGAGACAAGGCTTGTC 617588 30 100.0 36 AAGGCTTGTC .............................. ACTCTTCCGGGTTCCTTCACCTACCGAATCACTTTA 617654 30 100.0 36 AATCACTTTA .............................. GTAATAGCTTCGCTCCTGGATTGAATTAATCTGGCG 617720 30 93.3 TAATCTGGCG ............................TG TCATTAGT ========== ====== ====== ====== ========== ============================== 93 30 36 CTCGCAATTGGATTAAGATGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [173,90] Score: 0/0.18 # # Final direction: F [4.91,0 Confidence: HIGH] >NC_015510 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 620191 30 100.0 35 CCAAGTTTGC .............................. CTAGCTACCCTCGCAGGAACCGGCGGCCTGGGAGG 620256 30 100.0 36 GCCTGGGAGG .............................. AGAGCAGCAACAGCAGGAGCGGGAGCAGAAGCGCTA 620322 30 100.0 36 AGAAGCGCTA .............................. TCGTACCAACCTGGCCCACCAATATCCGTATTGAAA 620388 30 100.0 36 CGTATTGAAA .............................. TGAATGCAGTTACGCCCTTTTGCTTGACCAAGCAAA 620454 30 100.0 36 ACCAAGCAAA .............................. GAGCGAACAACGATTCGCTGTAATGACTCATATGAA 620520 30 100.0 36 CTCATATGAA .............................. TAGTTAGCCGACCCCGATAGGGGGAACGCCCTCCTG 620586 30 100.0 37 CGCCCTCCTG .............................. GTAAAGTCGATTGTGAGTTGTGTGCTTTTTCTAACAA 620653 30 100.0 35 TTTCTAACAA .............................. CTTGTTCTTTTCTATTTGCTCATATCTCCATCTTT 620718 30 100.0 36 CTCCATCTTT .............................. CGCCTTAGTATGCCCATTCCACCTGCAATTAAAAGC 620784 30 100.0 36 AATTAAAAGC .............................. TGGCCTGGAAGCCTCCCTCCCAGCGGAGTACTCTTA 620850 30 100.0 36 AGTACTCTTA .............................. ACATTTCAGAGAAGCTGGCAACGGTATTGCTGCCCG 620916 30 100.0 36 TTGCTGCCCG .............................. ACATGTCTTTGTAAGTCACTGCCGGAACCGCTCCCG 620982 30 100.0 37 ACCGCTCCCG .............................. TACTTTTTCAAGATGGACATCTCCAATACCACCGACC 621049 30 100.0 36 ACCACCGACC .............................. GTAGTACTCGCGATCGTAGTACAGTAAGGCACAGTG 621115 30 100.0 36 AGGCACAGTG .............................. TCCAAAACAAGTCTTTTTGCCCCAACCCGGATACTG 621181 30 100.0 36 CCGGATACTG .............................. GGTGTACCCCTTCCTGCGTGATTACGATCTTGGTTT 621247 30 100.0 36 ATCTTGGTTT .............................. CGAGCAATTGAAAGTATTGAAAGGGGAAGTGCGCAC 621313 30 100.0 37 AAGTGCGCAC .............................. GTGGCTAGGGTTCCGGATGAACCTACAGAGGGGTTGA 621380 30 100.0 35 GAGGGGTTGA .............................. AGATAAATAAAAAGCTGCGGCTTATTATCAATGTT 621445 30 100.0 36 TATCAATGTT .............................. CTTGTAAACATTCTCGTCAACTTCTTTGAACTCGTC 621511 30 100.0 35 TGAACTCGTC .............................. TCTTGAGAAAAGGCATAGTGTTTTTTAAAGTTTTG 621576 30 100.0 36 TAAAGTTTTG .............................. TAGTTACCAACATTCCTTTGGAATTGGCCTAAACTT 621642 30 100.0 35 GCCTAAACTT .............................. TAGTTGCGTGGGTGATCCTGTCAAGTTTGTTCAGT 621707 30 100.0 36 TTTGTTCAGT .............................. AGTGTACAACTACCTCGAATGCAACGGCCTGCAAGA 621773 30 100.0 36 GCCTGCAAGA .............................. TTTGCTGCTGTGTCTTAGCTAGCTGCTTCCTTACGT 621839 30 100.0 36 TTCCTTACGT .............................. TTGGTAGTGCTTTGTCGTGTAGCCGCCTTTTACCTG 621905 30 100.0 37 CTTTTACCTG .............................. TGATTGTTTGCTAAACATGCGGTTTGCTCTCGACTTC 621972 30 100.0 37 TCTCGACTTC .............................. TCATGCACGAGTTTTTACGTGCGCTGACTTCATCAAA 622039 30 100.0 36 CTTCATCAAA .............................. AAAGGGTGGCATGCAAGCGATCCGGTAGCGGTTCAG 622105 30 100.0 36 AGCGGTTCAG .............................. TCATTTCCAGCGCCAGGGCTTTAGCTTCTCCAAAGT 622171 30 100.0 37 TCTCCAAAGT .............................. ATCCGGCTTGAGCACCCTTTAGTTCGCGTTCTACCCC 622238 30 100.0 35 GTTCTACCCC .............................. ATGTGTTAAATACACAGGAGGGGCTAGCAGTGAAA 622303 30 100.0 36 AGCAGTGAAA .............................. TGCGTCCCCCTTTCTGATCTCTTGCCGTTCTACCGA 622369 30 100.0 36 GTTCTACCGA .............................. AATCATGGTAACAATGAGTTCAGGGGAAACAATATC 622435 30 100.0 37 AAACAATATC .............................. CTGTTCGGAAGAATTAAGGGGGAGTACTACTGGTTCA 622502 30 100.0 36 TACTGGTTCA .............................. TTGTATACTTTCTTGTCGCTCACCTGCCGCTGCGGT 622568 30 100.0 36 CCGCTGCGGT .............................. GCCCTATTTGTTGATTGAATTCTGTTTGCCTCCTGT 622634 30 100.0 36 TGCCTCCTGT .............................. ATGTCTTCCTGTTGGTTTGCATAATAATTCTTGATT 622700 30 100.0 36 ATTCTTGATT .............................. GATAAGCGATAAGACGAAGGAAAATCAGATAGACAT 622766 30 100.0 35 AGATAGACAT .............................. TCAGAATCGAAGAAGCAAAATTAAAACTCCGACAG 622831 30 100.0 36 ACTCCGACAG .............................. ACATCTACGGCGAAGGGAAAAACACCGAGTACGGCG 622897 30 100.0 35 GAGTACGGCG .............................. AATTCCTCCAGCTTCTTTTGTAGGTTGGCTTTGTT 622962 30 100.0 36 TGGCTTTGTT .............................. CACTTCGCTGATGTCCTCGGTTTGGATGTAATACGA 623028 30 100.0 36 TGTAATACGA .............................. CTTGTTGCAGCGCTACACTGTACGCGCAAATCAGGT 623094 30 100.0 36 CAAATCAGGT .............................. TGCACTACCGCTACTGCCCTACCCTCAAGCGTGCGC 623160 30 100.0 36 AAGCGTGCGC .............................. TATCTATATTTCCCTGCGTTCCATCTCTCCTCTATG 623226 30 100.0 36 CTCCTCTATG .............................. ATATATGAGTAGATCTACCGCGTTAAAGGTTCGTGT 623292 30 100.0 36 AGGTTCGTGT .............................. TGCAACCCGAGGCCTCAATTGATCTCATGCGCGTGG 623358 30 100.0 36 ATGCGCGTGG .............................. TATCTATATTTCCCTGCGTTCCATCTTTCCTCTATG 623424 30 100.0 36 TTCCTCTATG .............................. TTTTTGCTCCTCCATGTACGTGTCGATCTCTTCGCG 623490 30 100.0 37 TCTCTTCGCG .............................. TCGTTGAACCAGCGCCGACAACCCCGGCACAATGGCC 623557 30 100.0 36 CACAATGGCC .............................. TTATTTGGTTATACTTTTACCGCAAATGTAAGCGAA 623623 30 100.0 36 TGTAAGCGAA .............................. GCCTATGACGACGGCGCAAAAGTGGGAACAATTTAT 623689 30 100.0 36 AACAATTTAT .............................. TTTTGTTTGTTCCGCTTTTTTCCTAAAAAAGCGGTA 623755 30 100.0 35 AAAAGCGGTA .............................. TTTGTAGATGGCGTTTGTGTGTAATACCTTTTTTG 623820 30 100.0 36 ACCTTTTTTG .............................. TTTGTTGCCCTGGGTGTATACTACCCTTGGTGTTAA 623886 30 100.0 36 TTGGTGTTAA .............................. CTGGCTCCCCTGGCAATTTCCTTCCCTCCGTACTGG 623952 30 100.0 36 TCCGTACTGG .............................. TTGAAAGGCAACAAGTACCTGAGTGCTGGAGCCAAA 624018 30 100.0 36 TGGAGCCAAA .............................. GGCATTGAAGGCGATGCCCGCACGTTTGAGGTGTAC 624084 30 100.0 36 TGAGGTGTAC .............................. GGATCAATTGGCTAATTTCTTCCCGCTGCATTGCGA 624150 30 100.0 37 TGCATTGCGA .............................. TTTCAGAGGTTTCGTAAATTGGAGCTATCCACCAAAA 624217 30 100.0 36 TCCACCAAAA .............................. AGGTTGTTTTGGGTTGTTCTGTCAAATATCTGAAAC 624283 30 100.0 37 TATCTGAAAC .............................. AGAATTTCACCGCTAGCGCCTATGAGAGCAGGATTTG 624350 30 100.0 37 GCAGGATTTG .............................. CGTTGATAACGATTAAGAATTTCACGCATAGATAGCA 624417 30 100.0 36 ATAGATAGCA .............................. TGTCTAACATCTACGAAATAACTTGCGCAATCATCG 624483 30 100.0 36 GCAATCATCG .............................. GACATAGGTTCTGGTGTATCAGGTGCTTTATCGAAA 624549 30 100.0 36 TTTATCGAAA .............................. GGAGCAGGGGGTAACCATCGCCGATGTTGCAAAGGC 624615 30 100.0 36 TTGCAAAGGC .............................. CTTGTTTTTAATGTGCATAATTATTCGTTTTTGGAT 624681 30 100.0 36 GTTTTTGGAT .............................. CTGGTTATCGGCTACATAATAATTTGCAATACCGGA 624747 30 100.0 36 CAATACCGGA .............................. TTTTCTTTTCCGTAGAGGAACACAATCAGGGTCAGC 624813 30 100.0 36 CAGGGTCAGC .............................. TAGGCACCTACTACGTTTCCGAGGATATTGACAGGG 624879 30 100.0 37 ATTGACAGGG .............................. ACAACAGGGTCACCCCTACCGAGATGTAAAAGCCTTT 624946 30 100.0 36 AAAAGCCTTT .............................. ATCCGTGCAGGATGAAAACATCTTTCTAAAGGATCA 625012 30 100.0 35 TAAAGGATCA .............................. GAAGTATGAGGAGTTGGCGATGTATGATCCGAAGA 625077 30 100.0 36 GATCCGAAGA .............................. ATAGCGTCAGTCCCGTTTACATGAAAAATGTAATTT 625143 30 100.0 36 AATGTAATTT .............................. AGACCAGGGGGGATTCTTCCGCAAGAACCTCCGCTG 625209 30 100.0 ACCTCCGCTG .............................. TGGAAAGCCGTAGCCGATGTGCTCGACCTGGCCGAC ========== ====== ====== ====== ========== ============================== 77 30 36 CTCGCAATTGGATTAAGATGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [108,276] Score: 0.18/0.18 # # Final direction: F [4.77,0.18 Confidence: HIGH] >NC_015510 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 7792545 36 100.0 32 AAAGCTAAGG .................................... AATTATCTGAATTGATCCAAGATGTACGCCTG 7792613 36 100.0 35 TGTACGCCTG .................................... GACAGACTCCCAGGTTCCAGCCCGTCCCCTCCCTT 7792684 36 100.0 33 CCCCTCCCTT .................................... AAAACAATGTTATGAGGTATTAATCCCAGTTTC 7792753 36 100.0 34 TCCCAGTTTC .................................... AATAGCCAAGAGCGCAGCTGACAATATGGGGTAC 7792823 36 100.0 32 TATGGGGTAC .................................... CATAACAAACATGAGGAGTATCCCGAACGCCC 7792891 36 100.0 33 CCGAACGCCC .................................... AGAAAAGCAAGTAGTAAACTTGTACAACAAAGA 7792960 36 100.0 33 ACAACAAAGA .................................... GAGAAGTAAGGGTCAGACAGTTGCAGTTCTGGC 7793029 36 100.0 35 CAGTTCTGGC .................................... TACAAAGTTCTCTGGGATGCTATCCACCTTTTCCA 7793100 36 100.0 34 ACCTTTTCCA .................................... AGGATCTTGAAAGAAGGATATAAGCGTTTGAAAT 7793170 36 100.0 33 CGTTTGAAAT .................................... GTATTAGTAGGAGGATCGACGTTACTTTGCAGA 7793239 36 100.0 33 ACTTTGCAGA .................................... CTCAACGGCTGCGCATACCTTGTGCATGTACCA 7793308 36 100.0 35 GCATGTACCA .................................... CCGGTCATAACCTGAAGTTGCTTTCAGTACAACTT 7793379 36 100.0 34 AGTACAACTT .................................... ACCGCTTTATCGTAGCCAACATCACAGAGTCATC 7793449 36 100.0 34 CAGAGTCATC .................................... CATTTCACACCCAGCCTTACGGCAAAGATGCCGT 7793519 36 100.0 34 AAGATGCCGT .................................... AGCGAAAACTTACCAGTGGCGGCACTTTGGCCAT 7793589 36 100.0 35 CTTTGGCCAT .................................... GGTACTTTTTGCTCGGTCGTAAACGGCATAGCAAA 7793660 36 100.0 35 GCATAGCAAA .................................... ATTACCAGAGGATTGGTGCTGTTGGTTTTTGCCCA 7793731 36 100.0 33 TTTTTGCCCA .................................... GCTGTAATACGGATTCTCACCGAAACGTGGGGT 7793800 36 100.0 35 AACGTGGGGT .................................... AATCACTAGCCTTGGCCGTTACTTCACGTCCTCAG 7793871 36 100.0 35 ACGTCCTCAG .................................... AGTAAGGTGCGCTTTGGCTCGGACGTAGATTCAAT 7793942 36 100.0 32 TAGATTCAAT .................................... ATAAATGCTCTCCAAGCCGGGAACCTTTACCT 7794010 36 100.0 33 ACCTTTACCT .................................... GTGAAGTTTGTTAAAGCCATTTTAATTTAGTTT 7794079 36 100.0 33 AATTTAGTTT .................................... ACTTTTTCACCTTGGCCAATGAAATTAACCGTT 7794148 36 100.0 33 ATTAACCGTT .................................... GTTGCGTAAACCTGAATTCAGCCTTGGCGGAGT 7794217 36 100.0 33 TTGGCGGAGT .................................... ACATGATACTTTGTTTAGGTGTGAACAATTAAG 7794286 36 100.0 35 AACAATTAAG .................................... TAAAATTTTCAGAAGGTGGTTAATTCACCACCTTC 7794357 36 100.0 33 CACCACCTTC .................................... TATACAGAAGGTTTCATCATTTACAGGTGGATG 7794426 36 100.0 35 CAGGTGGATG .................................... AATATTAATGTGGTCAGTAGCTCGGCTAGCAGCTA 7794497 36 100.0 35 CTAGCAGCTA .................................... GAGTCATCCCATCACGATCAATTGCAGCGATGGCG 7794568 36 100.0 35 AGCGATGGCG .................................... AATCGACTAATCGTAATAGTGCGCAACGCGCCAAT 7794639 36 100.0 33 ACGCGCCAAT .................................... GATAATGTCTGCCCCTTCCGGGGTAACATTGGT 7794708 36 100.0 34 TAACATTGGT .................................... GATACGCTGAGCGATGAATCCCTTCCATATGCGT 7794778 36 100.0 32 CCATATGCGT .................................... GAGAATTCGTACTGCCCGAACGCGATTTCGAG 7794846 36 100.0 34 CGATTTCGAG .................................... CATCTCCATCGATTGCAACTTCGCCAAATTAATA 7794916 36 100.0 34 CAAATTAATA .................................... CATAATTAAGCGCCAGCGGGTTACGGCAAGTAAT 7794986 36 100.0 34 GGCAAGTAAT .................................... TGTATCCAGTAGTTCTTCGCGTCTTATCTCTGTA 7795056 36 100.0 32 TATCTCTGTA .................................... AATAACGCCATGGACCCCATATGTCAATGCGG 7795124 36 100.0 34 GTCAATGCGG .................................... GGTAGTATATGCCGTTTGCCACTTGCCCCACTGG 7795194 36 100.0 34 GCCCCACTGG .................................... GTTTCGGTGAATTTGAAGGCGGCAGGTGTCGCAG 7795264 36 97.2 GGTGTCGCAG .....................A.............. AAGATCAAAG ========== ====== ====== ====== ========== ==================================== 40 36 33 GTAGGAGCGTATTCCATTTCAGACGGGGACTGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [8,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.30,-1.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [310,185] Score: 0/0.18 # # Final direction: F [0.41,0.37 Confidence: LOW] >NC_015510 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 7803909 35 100.0 35 AAAGCTAAGG ................................... CAATAATAGCACCAAAGACAGCTGTACCAGCAGTC 7803979 35 100.0 37 ACCAGCAGTC ................................... CTGCAGTTGTTCTGCCACAAACTGTGGCATTGACGAG 7804051 35 100.0 36 CATTGACGAG ................................... CTCTTTGCTTTTCTGCAGCTGCAGAGCAAACCTACG 7804122 35 100.0 36 CAAACCTACG ................................... CATTTTGCTCCATTTCAAATAAATCAGGTTCCATTC 7804193 35 100.0 37 GGTTCCATTC ................................... CAGTAAGTGCTTACACATTAGATTTGAGTTTTTGATG 7804265 35 100.0 36 GTTTTTGATG ................................... CAGTCCTTATCGTGTAGCTCTCTTGAGTACCATACA 7804336 35 100.0 35 GTACCATACA ................................... CCATAGTTATCTCTTATCCTTGATCTTTGCCCCAA 7804406 35 100.0 35 TTTGCCCCAA ................................... CAGTTACCAATTTACCTTTCTTAGGTGATTAGTTT 7804476 35 100.0 36 TGATTAGTTT ................................... CGCAATAGTGCCATTGATGATATGCTCATATGGGAG 7804547 35 100.0 36 CATATGGGAG ................................... CGGTTGAACGTCCAAAAGAACAGATTGTCCTTTCGG 7804618 35 100.0 33 GTCCTTTCGG ................................... CAGTCCTCATTCTTGGGAACTGGATTACCCTTA 7804686 35 100.0 36 ATTACCCTTA ................................... CACATAAAACATTGAGAGTCAGCACAATACCAGCTC 7804757 35 100.0 36 ATACCAGCTC ................................... CGTAGTCGTGGTGGGCGCGGGGGCGGGTTTTTCAGG 7804828 35 100.0 34 GTTTTTCAGG ................................... CGGTTTTGTCCACGGTTAACCTGATTTCCTGAGA 7804897 35 100.0 35 TTTCCTGAGA ................................... CCTGTTTACAATGTTGATTTCTTGTTGGAAATCGA 7804967 35 100.0 36 TGGAAATCGA ................................... CGGACTCGCAGTTACCTTTGAATCCAAATGCACATC 7805038 35 100.0 36 AATGCACATC ................................... CCGTCATCGACGGCAGAGATGTAAACCAGTCCGCTG 7805109 35 100.0 36 CAGTCCGCTG ................................... CGTTTCATGTAGTGGAGTTACATTTTTTAACAGCGT 7805180 35 100.0 36 TTAACAGCGT ................................... CTGTAGGTTTGGTACGCTTAACGCAACAAAAGCAAA 7805251 35 100.0 34 CAAAAGCAAA ................................... CGCTGCGCGGCTCTGCTGGCGGCGTAACCGGCGG 7805320 35 100.0 35 TAACCGGCGG ................................... CCGGTCAGCGGTACGAACAAGTTCTGTTTTAAGCT 7805390 35 100.0 34 GTTTTAAGCT ................................... CCGTAACGCTCACAGCAATGGATGATCTCATAGC 7805459 35 100.0 36 ATCTCATAGC ................................... CTTTTCCCACGCCGCTTGATCGTCAACGTATGGGAG 7805530 35 100.0 35 CGTATGGGAG ................................... CTAATGATTTGTTCACCGGTTGCAGAAAAATTTTC 7805600 35 100.0 35 AAAAATTTTC ................................... CATTCAAGTGAGCCAACTCATTACGACGAGGATTG 7805670 35 94.3 ACGAGGATTG .................................TT ACGAAGGG ========== ====== ====== ====== ========== =================================== 26 35 35 GTAGGAGCGTATTCCATTTCAGACGGGGACTGCGA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [8,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.30,-1.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [465,91] Score: 0.18/0.18 # # Final direction: F [0.59,0.37 Confidence: LOW] >NC_015512 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 65795 37 100.0 28 NNNNNNNNNN ...A..........C...................... CAAATTGATTACAATCACCACTTAAATA 65860 37 100.0 26 NNNNNNNNNN ..................................... ATTCTCTTAGCTTCTTCAGCTCATAT 65923 37 100.0 28 NNNNNNNNNN .............A....................G.T TGTTTTAATGTGGGTGAATTGTTTATTT 65988 37 100.0 26 NNNNNNNNNN ..................................... TGATTTTTTCATCCTTAGCGATGTGT 66051 37 100.0 27 NNNNNNNNNN ..............C.....................G TCAATTCATTAAAATGAAAAACCTAAT 66115 37 100.0 27 NNNNNNNNNN ..............C...................... CGATTATCTTAAATATGTTATTAATGT 66179 37 100.0 30 NNNNNNNNNN .C................................... ATCGTTTTTGTTTTTTCTTTTCCGTTCGAT 66246 37 100.0 28 NNNNNNNNNN .............A....................... ATCAACTTACTCTTATAGCGGATTGTAT 66311 37 100.0 32 NNNNNNNNNN ..................................... ATTTAATTCATAAACTAATTTATCAACGCCAT 66380 37 100.0 29 NNNNNNNNNN ..................................... ATCATTCAAAACTCACAATAATGAATACT 66446 37 100.0 27 NNNNNNNNNN ..................................... TGTTTTTTTAATCCCTTTGTGGCTTTT 66510 37 100.0 28 NNNNNNNNNN ..................................... ATGAACTAATTTTCATTATAAACCTTTA 66575 37 100.0 28 NNNNNNNNNN ..................................... TTGAATCAAAACTTAAAAATATGAAAAA 66640 37 100.0 31 NNNNNNNNNN ..................................... TATTTCATCATTCAAACTATACTTCTAATTA 66708 37 100.0 28 NNNNNNNNNN ..................................... AGTAAACAAGCATAAAAAAACAACTAAT 66773 37 100.0 29 NNNNNNNNNN ..................................... AGTTTAAACAATTATTATTTCACCCATTT 66839 37 100.0 28 NNNNNNNNNN ..................................... ACAATCAAACAACTAATCAATATGAAAG 66904 37 100.0 30 NNNNNNNNNN ..................................... TTTTTTTTTTAACCAAAATCCACGCAAGAT 66971 37 100.0 1 NNNNNNNNNN ..................................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 19 37 28 GTCGCGATTCGAAGAGGAAACAGGCTCTTGGTGCACC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [9,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.50,-2.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [43,205] Score: 0.18/0.18 # # Final direction: R [0.74,0.86 Confidence: LOW] >NC_015512 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 70335 36 97.2 29 TACTGAAGCT ..T................................. TTGTTTTACTGTGGGTGAATTGTTTATTT 70400 36 100.0 29 TTGTTTATTT .................................... CTTTTTTTACCGTAATCCAATTCACTTTG 70465 36 97.2 28 ATTCACTTTG ............................C....... CCAATTGTTTTCATTCCGAATTTCTCAC 70529 36 100.0 28 AATTTCTCAC .................................... CAAATTTTTTCATTATGGGCACATTCGA 70593 36 100.0 30 GCACATTCGA .................................... CCTATTATTAACCATATTTTTCAAACCAAA 70659 36 100.0 32 TCAAACCAAA .................................... CATTCTTTGATTATATCCTTTTTAGCATATAT 70727 36 97.2 28 TAGCATATAT ............................C....... TATTACTAACCCATATACCCATCAGTTA 70791 36 97.2 32 CCATCAGTTA ............................C....... CTATTCACTCGTGGACAGAAAAGTTCACACAA 70859 36 100.0 GTTCACACAA .................................... CCTATGTTTTT ========== ====== ====== ====== ========== ==================================== 9 36 29 GTCGCGATTCGATAAGGAAACAGGCTCTTGGTGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [9,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [139,235] Score: 0/0.18 # # Final direction: F [0.74,0.68 Confidence: LOW] >NC_015518 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 1588353 24 100.0 41 AAAAACCTCA ........................ AACCAGTTGGGCAGAAAGTTTAAATACCAGTCCGCGAAGAG 1588418 24 100.0 40 CCGCGAAGAG ........................ TATCTGTTACAGTATCCTTGAACTTTTCAAATCTAGTAAT 1588482 24 100.0 41 ATCTAGTAAT ........................ AAAGATAAGAAGATTGTAATTAACGTTGCACATGATGAACC 1588547 24 100.0 ATGATGAACC ........................ TTTTTCTTCG ========== ====== ====== ====== ========== ======================== 4 24 40 GATAATCTACTATAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.00%AT] # Reference repeat match suggestion: F [matched GATAATCTCTTATAGAATTGAAAG with 91% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [293,1115] Score: 0.18/0.18 # # Final direction: F [5,0.18 Confidence: HIGH] >NC_015512 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================== ====== 80412 22 100.0 43 NNNNNNNNNN ......A............... AGTGCACCTTCATTCTTCCATCATAGCGCCTTGTTTGTCGCGA 80477 22 100.0 43 NNNNNNNNNN ......A............... GGTGCACCTATAATATTTTCAACCTTAAAAAACAATGTCGCGA 80542 22 100.0 48 NNNNNNNNNN ......A............... GGTGCACCTTCTAAACTTGTATCACTATGGATCCATTAGAAGTCGCGA 80612 22 100.0 44 NNNNNNNNNN ...................... GGTGCACCTCTTCTTTGCACTCTTCAACTGCTTCAACGTCGCGA 80678 22 100.0 42 NNNNNNNNNN ......A............... GGTGCACCTCATCTTTCGCTTTATTTTTGTCGATTGTCGCGA 80742 22 100.0 41 NNNNNNNNNN .....TA............... GGTGCACCAAGTACATATTTAAAAACCTTTAAAAGTCGCGA 80805 22 100.0 41 NNNNNNNNNN ...................... GGTGCACCTTTTCTTAACCCCGGTTTGCAAGAGTGTCGCGA 80868 22 100.0 43 NNNNNNNNNN ...................... GGTGCACCATATATTTCTTCTCTTTGTGTGTGTTTTGTCGCGA 80933 22 100.0 41 NNNNNNNNNN .....TA............... GGTGCACCATTCTCTTAGCTTCTTCAGCTTATATGTCGCGA 80996 22 100.0 43 NNNNNNNNNN .....TA............... GGTGCACTTGTTTTAATGTGGGTGAATTGTTCATTTGTCGCGA 81061 22 100.0 45 NNNNNNNNNN ...................... GGTGCACCACCATGAAAATAACTAAATATACCATGAAAGTCGCGA 81128 22 100.0 43 NNNNNNNNNN ...................... GGTGCACCTGTTATTTAATTTTTTTACAGTTTTTTTGTCGCGA 81193 22 100.0 44 NNNNNNNNNN ...................... GGTGCACCGACCTAATCGGCATTTCTTGTTTCAAAAAGTCGCGA 81259 22 100.0 44 NNNNNNNNNN ...................... GGTGCACCAAGGAGAGAGAACAAGTCCACAGTCAAAAGTCGCGA 81325 22 100.0 41 NNNNNNNNNN ...................... GGTGCACCAACCTATTTTTATGAAATATTTGTTTGTCGCGA 81388 22 100.0 45 NNNNNNNNNN ...................... GGTGCACCTGATATTCGTATATTATTTCATAACTTAATGTCGCGA 81455 22 100.0 1 NNNNNNNNNN ...................... NNNNNNNNNN ========== ====== ====== ====== ========== ====================== 17 22 43 TTCGAAGAGGAAACAGGCTCTT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.55%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [45.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [233,249] Score: 0/0.18 # # Final direction: R [0,0.68 Confidence: HIGH] >NC_015512 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 80549 23 100.0 47 CGATTCGAAA ....................... TTCTAAACTTGTATCACTATGGATCCATTAGAAGTCGCGATTCGAAG 80619 23 100.0 43 CGATTCGAAG ....................... TCTTCTTTGCACTCTTCAACTGCTTCAACGTCGCGATTCGAAA 80685 23 100.0 41 CGATTCGAAA ....................... TCATCTTTCGCTTTATTTTTGTCGATTGTCGCGATTCGATA 80749 23 100.0 40 CGATTCGATA ....................... AAGTACATATTTAAAAACCTTTAAAAGTCGCGATTCGAAG 80812 23 100.0 40 CGATTCGAAG ....................... TTTTCTTAACCCCGGTTTGCAAGAGTGTCGCGATTCGAAG 80875 23 100.0 42 CGATTCGAAG ....................... ATATATTTCTTCTCTTTGTGTGTGTTTTGTCGCGATTCGATA 80940 23 100.0 40 CGATTCGATA ....................... ATTCTCTTAGCTTCTTCAGCTTATATGTCGCGATTCGATA 81003 23 95.7 42 CGATTCGATA ......................T TGTTTTAATGTGGGTGAATTGTTCATTTGTCGCGATTCGAAG 81068 23 100.0 44 CGATTCGAAG ....................... ACCATGAAAATAACTAAATATACCATGAAAGTCGCGATTCGAAG 81135 23 100.0 42 CGATTCGAAG ....................... TGTTATTTAATTTTTTTACAGTTTTTTTGTCGCGATTCGAAG 81200 23 100.0 43 CGATTCGAAG ....................... GACCTAATCGGCATTTCTTGTTTCAAAAAGTCGCGATTCGAAG 81266 23 100.0 43 CGATTCGAAG ....................... AAGGAGAGAGAACAAGTCCACAGTCAAAAGTCGCGATTCGAAG 81332 23 100.0 40 CGATTCGAAG ....................... AACCTATTTTTATGAAATATTTGTTTGTCGCGATTCGAAG 81395 23 100.0 44 CGATTCGAAG ....................... TGATATTCGTATATTATTTCATAACTTAATGTCGCGATTCGAAG 81462 23 100.0 CGATTCGAAG ....................... CTATATTTTT ========== ====== ====== ====== ========== ======================= 15 23 42 AGGAAACAGGCTCTTGGTGCACC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [63.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [370,241] Score: 0/0.18 # # Final direction: F [0.37,0.27 Confidence: LOW] >NC_015518 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 1562889 24 100.0 42 AGAACGAGCG ........................ TCGACGACTATCTCATCTTTAAGTACTTGCCTTGCAGTCTTC 1562955 24 100.0 34 TGCAGTCTTC ........................ TTCTCTTTTAGCCTTCTATCCCAGGGATTAAGTA 1563013 24 100.0 33 GGATTAAGTA ........................ AATCCAGTCAAACCAGCTAATAGTTTTCCTGAT 1563070 24 100.0 34 TTTTCCTGAT ........................ TTCTTCTTACTGAACATGAAGAGACCGTATACCC 1563128 24 100.0 36 CCGTATACCC ........................ GGATTGTTCTGGATCCATTGACTCTGAAGATTACTA 1563188 24 100.0 36 AAGATTACTA ........................ AAAAACAAATCCCCAAATAAATCCCCAAAATAATAC 1563248 24 100.0 36 AAAATAATAC ........................ GTATCCCTACTGGATTTGTCACCACGGTATAATTTC 1563308 24 100.0 34 GTATAATTTC ........................ TCTTTATCCTCTTTTATCATTTGTATCCCCATAC 1563366 24 100.0 34 ATCCCCATAC ........................ CTTACCTTTATTCCTGCTATTTCCCCTTCTACCT 1563424 24 100.0 35 CCTTCTACCT ........................ CAATAGCTTTCGCCAATTATCAGCCACCGGATCAG 1563483 24 100.0 34 ACCGGATCAG ........................ TTCTCTTAGTATTTTTACATATCTCAACGAAAAA 1563541 24 100.0 34 CAACGAAAAA ........................ AACAAGGACGTATTGAACACCGTCAAGAGGGCAA 1563599 24 100.0 33 AAGAGGGCAA ........................ ATCTTGCAACCTTGTTCTGCAGCTTGGCAATAA 1563656 24 100.0 36 TTGGCAATAA ........................ CAAAAGGAAGGTGGAGCATACCTGGGACTACAGTGT 1563716 24 100.0 34 ACTACAGTGT ........................ TATCAATATGCCGTTTTAGAGAATTTCCCATTAC 1563774 24 100.0 34 TTCCCATTAC ........................ TTTTTAAAGTCGTAATTAACGATTATTATCGCGT 1563832 24 100.0 34 ATTATCGCGT ........................ CTACGTTTCCGCCCTACTATCACTACAATATCAT 1563890 24 100.0 35 ACAATATCAT ........................ TAATGAGTTTATCAGGCTTAGTATGTCATCAACAG 1563949 24 100.0 37 TCATCAACAG ........................ TCAACTGCTCTCCCTATATAGTAAGAAGCCTCTCTTT 1564010 24 100.0 33 GCCTCTCTTT ........................ AGAGAACGTGAGGATAAAGGAAGTCGATGTTGA 1564067 24 100.0 35 TCGATGTTGA ........................ CACTTCTATAGAGCTGTAGCAGACAGCCTTTATAC 1564126 24 100.0 36 GCCTTTATAC ........................ CTAGGCTTTTAGGGCATAAACGGCGTGCTAACTGCT 1564186 24 100.0 35 GCTAACTGCT ........................ AAATCGGGAAAAAGCCCGGGTATTTTTGACGTGTT 1564245 24 100.0 34 TTGACGTGTT ........................ TATATAACGATATAATAACGCTCTAAACTAAGGG 1564303 24 100.0 34 AAACTAAGGG ........................ ATCACACGGAAAGAAAGTCGTAGTTACCACCTTA 1564361 24 100.0 34 TACCACCTTA ........................ GGAACTCCAGAAAAGAATGAGGATCAGACAGTCC 1564419 24 100.0 34 CAGACAGTCC ........................ GCCCTGTGCTAATACAGGCGCTGCAAGAGTTTGC 1564477 24 100.0 34 AAGAGTTTGC ........................ CTATTTGCCAAGTGGATTAAAACGAGTTGGACTA 1564535 24 100.0 34 AGTTGGACTA ........................ AAATATTATTTTAGAGGTGAGAAAAATAGACGAA 1564593 24 100.0 34 AATAGACGAA ........................ TCTTGAAGGGCGAGGTTTGTCGTTCGTTCAGTCA 1564651 24 100.0 34 CGTTCAGTCA ........................ ATTCCAGTCTATCAAGTAGGGGATCCCAAAGACC 1564709 24 100.0 35 CCCAAAGACC ........................ TGAGATATTGGTGTGGGATATGGGTTTAAAGCAAT 1564768 24 100.0 34 TTAAAGCAAT ........................ TTTGCCGTCTTTTTCTTTATAGTTGTACACCAGT 1564826 24 100.0 34 GTACACCAGT ........................ GCTACTGGACTTAAATACGTCGCTTCAATTAAAC 1564884 24 100.0 36 TCAATTAAAC ........................ CTGTTGTAGTTTTCGTGTTAGTATTATCCTTAACTA 1564944 24 100.0 34 TCCTTAACTA ........................ GTAGATTTGGACGTATTACTTAATATCGTGAAGA 1565002 24 100.0 35 ATCGTGAAGA ........................ ATATACTGGACTAACCATGGTGCTTACTTCTTAAT 1565061 24 95.8 35 ACTTCTTAAT ...................A.... TTCTAATCCATCATTTATTCTAACGCTAATAACTA 1565120 24 95.8 CTAATAACTA ...................A.... GTGCTTGAGTCTATCAAATACCCTTCTCTGGAT ========== ====== ====== ====== ========== ======================== 39 24 34 GTTGAAATAAGGAAGAACTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [769,126] Score: 0.18/0.18 # # Final direction: F [0.18,0 Confidence: MEDIUM] >NC_015514 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 569136 28 100.0 33 NNNNNNNNNN ............................ CCGGTTGCGGACGATCTCGAACCCATTCGTCGC 569197 28 100.0 33 NNNNNNNNNN ............................ GCACCGCCGCATCATCTCCGTCGACGACGCCCT 569258 28 100.0 34 NNNNNNNNNN ............................ GTGGTCGATGCGTTCGGTGGCGGGCATGCCGGCG 569320 28 100.0 33 NNNNNNNNNN ............................ GGCCACCGACGGCACCGGCACCGCCGGGCAGGA 569381 28 100.0 33 NNNNNNNNNN ............................ CGGCGGGGCGATCGGGACCTCACGCCAGCCCGC 569442 28 100.0 33 NNNNNNNNNN ............................ GTTGTTGTGCGCGATCCGGCCACCCTGCACCGC 569503 28 100.0 33 NNNNNNNNNN ............................ CCGAAGTCGATCGCGCGACCCCACCCGTGGTTC 569564 28 100.0 33 NNNNNNNNNN ............................ CGGGGACCAGGCCGCCGCTGCGTTCGCACAGAA 569625 28 100.0 33 NNNNNNNNNN ............................ CCGCAACCGGTGGGGTTCACGATCGACCCGCCA 569686 28 100.0 33 NNNNNNNNNN ............................ CCGTTCGGAGGACCCGCAGGGCGTCGATGCCTA 569747 28 100.0 33 NNNNNNNNNN ............................ CGGGCCGAGGGTCAGGACGACATCGCCGGGCGC 569808 28 100.0 33 NNNNNNNNNN ............................ TGTGGCGTCCGGGTCCTCACCGTGCGGGTCGTA 569869 28 100.0 33 NNNNNNNNNN ............................ CGACCCGCCGACCTTGACCTTCCCGAGCCCGTG 569930 28 100.0 33 NNNNNNNNNN ............................ CCACGCCGCGACGTCCTTGAGGATCGGCAGGCC 569991 28 100.0 33 NNNNNNNNNN ............................ CCGGCCGATGACCTCCGTGATGGACCAGCCGTG 570052 28 100.0 33 NNNNNNNNNN ............................ CTGGACACGGTGCGTAGCGTGCTGCGCGGGCGG 570113 28 100.0 33 NNNNNNNNNN ............................ GGGCTTCAAGACGGTCCGGTGCCTCATCGAGGA 570174 28 100.0 33 NNNNNNNNNN ............................ CCGCGACGGCGAGTGAGGTCTGTGCGACCATCG 570235 28 100.0 33 NNNNNNNNNN ............................ CGACGACGGGCCCGGGGATACCCGTGGGTTCGA 570296 28 100.0 33 NNNNNNNNNN ............................ GAACCACACGAGCCCGGCGACGAGCGCGGCCAC 570357 28 100.0 33 NNNNNNNNNN ............................ CCGCGCGACGCGCTCGTCGGTGACGCGGCGCAG 570418 28 100.0 33 NNNNNNNNNN ............................ CTCGGAGAACCACGCGGGCTCCACGCCGAGGAC 570479 28 100.0 33 NNNNNNNNNN ............................ CGTCGTGCGCAGCGTCTTCGGGGAGGGTGCGCA 570540 28 100.0 33 NNNNNNNNNN ............................ CTGCGGCGGGTCTGGTGAGGCGCCCGACCCGGA 570601 28 100.0 33 NNNNNNNNNN ............................ CGACGGCGTCGACGCGGCGGGCGCGTCACGGAA 570662 28 100.0 33 NNNNNNNNNN ............................ CGGTGGTGGTCGCCATGGTGGCGGGTCTCCTGT 570723 28 100.0 33 NNNNNNNNNN ............................ GTACGAGTTCCAGGGGCGCGGCGCGCCGCACTT 570784 28 100.0 33 NNNNNNNNNN ............................ CCGTCCGCGCCTCCATGTCCACATCGATCCACT 570845 28 100.0 33 NNNNNNNNNN ............................ CGACGCCGAGGCGCGTCGGCACCGCACCAAGTC 570906 28 100.0 33 NNNNNNNNNN ............................ GGCGATCGAGAAGGCGCTCGACGCGCCGTCCGG 570967 28 100.0 33 NNNNNNNNNN ............................ GGTCCCGCGCATCCACGACCTGCGGCACTCGCA 571028 28 100.0 33 NNNNNNNNNN ............................ CGGCCACTGTCCGCCGTACTCGCGGGCGAACTG 571089 28 100.0 33 NNNNNNNNNN ............................ GCAGTAGTCGCCGCCGGTGAGCCACCCGCGCGT 571150 28 100.0 33 NNNNNNNNNN ............................ GAACAGGCCGTCGACCGGCTCCCGGACGCCGGC 571211 28 100.0 33 NNNNNNNNNN ............................ TGACGACCTCCGCGCCGGTCGGCCGGTGTACTC 571272 28 100.0 33 NNNNNNNNNN ............................ CCACACACGGGCTGCGGCGCTCACTGGGCACCA 571333 28 100.0 33 NNNNNNNNNN ............................ GGCGTGGCTCACGACCACCGGGCCGCGCACAAT 571394 28 100.0 33 NNNNNNNNNN ............................ CGCGGTCGTGACCGGGAGGGTCAGGGTGTACTC 571455 28 100.0 33 NNNNNNNNNN ............................ CGCGGCCGTGACACGCGAGGTGTTGAACGCGTT 571516 28 100.0 33 NNNNNNNNNN ............................ GTCGAGCCCGAGTGAACTTCGCGGGCGAAGTCC 571577 28 100.0 33 NNNNNNNNNN ............................ CCACTCGGTGTCGGAGTCCCCTGTGGAGTCGCC 571638 28 100.0 33 NNNNNNNNNN ............................ CGGGTAGCGGTCGCGTGACGGTCCGACGGTGCG 571699 28 100.0 33 NNNNNNNNNN ............................ GTTCGACCCGGGGTCGCCGATGCCGACCATGGG 571760 28 100.0 33 NNNNNNNNNN ............................ CCGCGCGGCCATGTCCTCCGCGTTGAGGCCGGC 571821 28 100.0 33 NNNNNNNNNN ............................ TCCTGGTCCGCACGGGAGCCCTGCGGCAGCACG 571882 28 100.0 33 NNNNNNNNNN ............................ CCTGACCGCGGTACACCGCCGCAGCCGCCGGCA 571943 28 100.0 33 NNNNNNNNNN ............................ CGCCGTGGAGGACGCACGCCAGGCCGCACGCCA 572004 28 100.0 33 NNNNNNNNNN ............................ GGCGTCGCACTCGTCCGGGCAGGACTCGACCCA 572065 28 100.0 33 NNNNNNNNNN ............................ GAGAACCCGACGCCCGCAGCCGAGTAGATGCCC 572126 28 100.0 33 NNNNNNNNNN ............................ CAAGGGCGTCGTGCTCGGCGTCGTCGGCGTGAT 572187 28 100.0 33 NNNNNNNNNN ............................ CGACGCCGCGACCCACTCACACCGCCACCGGTG 572248 28 100.0 33 NNNNNNNNNN ............................ CAAGGCCGCCCTGTTCGTGCTGCGCGGGCGGAC 572309 28 100.0 33 NNNNNNNNNN ............................ CGGCACAGTCACCTTGTACGTGCCCTCGCGGCG 572370 28 100.0 33 NNNNNNNNNN ............................ GTGCTTGCTGTAGAGGTCGCGTGCGATGGGTTC 572431 28 100.0 33 NNNNNNNNNN ............................ CGCCTCCAACTGCTCGTCGGACAGCTCCTGCGC 572492 28 100.0 33 NNNNNNNNNN ............................ CGTCGACGTCCACCACACCAACACCTGGCCCAC 572553 28 100.0 33 NNNNNNNNNN ............................ GGCCACCGACGACACGGGCACCGCCGGGCAGGA 572614 28 100.0 33 NNNNNNNNNN ............................ CGGCGGCAAGGACTTCGCCGTGTTCGGCTACAC 572675 28 100.0 33 NNNNNNNNNN ............................ CGTCGCCGCGATCACGGTCCAGTCCCAGGTGTC 572736 28 100.0 33 NNNNNNNNNN ............................ TGGCAGACGGCAGAGCGGTCGGCGCCGGCGTGT 572797 28 100.0 33 NNNNNNNNNN ............................ CTGGCCCATGCTCACCGCCTCCCTTGGTCACTT 572858 28 100.0 33 NNNNNNNNNN ............................ GCCGCGCCCACGCCGCGGCGACCCCGGGTCGCA 572919 28 100.0 33 NNNNNNNNNN ............................ CCGGATCTGCCCGCCGACGACCGGCGTGTCACC 572980 28 100.0 32 NNNNNNNNNN ............................ GTCCTCCTCGATGGGGTCGACCCCCGGGGGGT 573040 28 100.0 33 NNNNNNNNNN ............................ CGGTCCACGCACGGGCCGTTCGAGCCCGAGCCA 573101 28 100.0 33 NNNNNNNNNN ............................ GGTCATCGGGGCCGTCACGATCGGTGCCGGGGC 573162 28 100.0 33 NNNNNNNNNN ............................ CTCCGGCACCATCATCACAGGATCCCGCCCCGG 573223 28 100.0 33 NNNNNNNNNN ............................ GGTCGGGCGGGGGTGATCTGGGTCAGCGGTCGG 573284 28 100.0 33 NNNNNNNNNN ............................ CACGACCCGGCCGCGCTTGGTGCGAGCCGGGAG 573345 28 100.0 33 NNNNNNNNNN ............................ CGACGCGATCAGAGCGTCGGACTCCCACGCGAA 573406 28 100.0 33 NNNNNNNNNN ............................ CACGGTCACCGCGATCCCGTCGGCGCCGAGCTG 573467 28 100.0 34 NNNNNNNNNN ............................ GACGTCGTCCGAGGAAGTCGCCCTGGCCTACGCC 573529 28 100.0 33 NNNNNNNNNN ............................ CTGAGTGGGAGCCTCCCCACCCCTAGGGGGGAG 573590 28 100.0 33 NNNNNNNNNN ............................ CTTGCGCTCGTAGGCGGCCTCGTCCCACACCTG 573651 28 100.0 33 NNNNNNNNNN ............................ CGCGGCCGACGCCACGAACCCGCGCAAGGACAT 573712 28 100.0 33 NNNNNNNNNN ............................ GGTCTGAACTGCGTTGAGTAGTGCTGCGATGGC 573773 28 100.0 33 NNNNNNNNNN ............................ CCCGTGGTGGTACTACAAGGGCACCGTCTGCGC 573834 28 100.0 33 NNNNNNNNNN ............................ CACCGATGACGCCGCGGCGGAGTCGGCCGCGTG 573895 28 100.0 33 NNNNNNNNNN ............................ CACCGTGGCCCCGTGCGCTGTGCCTGCCCTGTG 573956 28 100.0 33 NNNNNNNNNN ............................ CTGGAACCACTGGTGGAAGATCCACGCCCCGTC 574017 28 100.0 33 NNNNNNNNNN ............................ GAAGATCCGCTCCTGCGTCGCCCGGTCCCGGTA 574078 28 100.0 33 NNNNNNNNNN ............................ GTCCCCAGCGAGCCCCGGGAGACCGACGTGGTC 574139 28 100.0 33 NNNNNNNNNN ............................ CACCGCGACGATCCCGAACAGCGCACGGCCCAT 574200 28 100.0 33 NNNNNNNNNN ............................ CTCCTCGTGGTCGATCGACTGGCGTACCCGGTC 574261 28 100.0 33 NNNNNNNNNN ............................ CGCTCCGACCTCAGCCGGGCGCGCCCACTCGTA 574322 28 100.0 33 NNNNNNNNNN ............................ CGAGATCCGGTCGCCTGCTAACGACGCGGAGAA 574383 28 100.0 33 NNNNNNNNNN ................A........... GCGCTGGGAGCGCGCGGTGGGCCCGTGGCGGGT 574444 28 100.0 33 NNNNNNNNNN ....GT...................... CGTGGCCAGGCGCTTGAACACCGTGGTGCCGGC 574505 28 100.0 33 NNNNNNNNNN ............................ CTCCGACGTCCCGGCGGGCGGCACGCCGGGGTG 574566 28 100.0 33 NNNNNNNNNN ............................ CGACTGAGCCGTCAGCGTCGACCCGTCCACCGC 574627 28 100.0 33 NNNNNNNNNN ............................ CGACTGGCACCTGCGGGAGGCGTCGCAGCGGCC 574688 28 100.0 33 NNNNNNNNNN ............................ CTACGAGGTCGGCACCACGCAGCCGACGAACCG 574749 28 100.0 33 NNNNNNNNNN ............................ GGCCGCCGTGCTCGGGGTGACCGGGGTCATGAC 574810 28 100.0 33 NNNNNNNNNN ............................ GTTCGACTCGAAGATCCTGACCGCCCTGCAGAA 574871 28 100.0 33 NNNNNNNNNN ............................ CGTCCCCGCAAGCGGGGCCCCTCGCGAGCTCGA 574932 28 100.0 33 NNNNNNNNNN ............................ GGGGAACCGGGTCACGGTCCGGGGGCGGCTGGT 574993 28 100.0 33 NNNNNNNNNN ............................ CAAGGGCCGGGACGTCGCGTACTTCCCTGGCGA 575054 28 100.0 33 NNNNNNNNNN C........................... GTCGTCCAGGGTCGCGGCGAACGCGGCCGTCTG 575115 28 100.0 33 NNNNNNNNNN ............................ CGAGTACCTCGCGACGACGACCGGCTCGAACAA 575176 28 100.0 33 NNNNNNNNNN ............................ GGCGCCCTGTCGGACCTGTCGCGCGTGGAGTCC 575237 28 100.0 33 NNNNNNNNNN ............................ CACCGTCTTGAGGAAGTCCCACATCGACGCGAA 575298 28 100.0 32 NNNNNNNNNN ............................ CGCCGGAGACGCCTGCATCGACTGCTGCCCGT 575358 28 100.0 33 NNNNNNNNNN .GTCGTCT.................... CGGCGACGCGTCGTCGGCGACGATGTCACCCTC 575419 28 100.0 33 NNNNNNNNNN ............................ GCCGAGCACGTCAAAGGCCAGCGACGTCATGCC 575480 28 100.0 33 NNNNNNNNNN ............................ CAACAAGGCGTGGCGGTCGGCCGAGTCGGTCCG 575541 28 100.0 30 NNNNNNNNNN ............................ GAAGGGCCGCAGGCCGCGCGGTCAAGGGGC 575599 28 100.0 1 NNNNNNNNNN .GT..TCT....T....C...TGAGC.G NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 107 28 32 GTCGTCTCCCCGCGTGCGGGGATGAGCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-10.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-24] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [45.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [207,103] Score: 0.18/0.18 # # Final direction: F [0.86,0.74 Confidence: LOW] >NC_015518 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 1583823 24 100.0 44 GCCTTTCTCT ........................ TTCCCGTCGATCTCAATTGCGTTAGTGCCTGTGAGCGTACCAAC 1583891 24 100.0 40 GCGTACCAAC ........................ TATGATACAGCGGAACCAGAATTATTAGCACAGTTGGCTA 1583955 24 100.0 41 CAGTTGGCTA ........................ TACGTTTCCTACTTCGGCGTCTCTCCAGCACCTTACGGTGG 1584020 24 95.8 41 CTTACGGTGG ..............C......... TTGTCTTCGGCGTAGAGAGTTACTTTAATCGTTTCAAATTG 1584085 24 100.0 42 TTTCAAATTG ........................ CTCTGTAAGTATCACACTGAAAGTGAACGGATAGTTGGGATT 1584151 24 100.0 39 AGTTGGGATT ........................ GCTGAGATACTTGTTCTTCTTTATGGCGCAGTTATTTCT 1584214 24 100.0 41 AGTTATTTCT ........................ CAAGAGAAAGCTTTTTAAACCCCCTTTCCCTTTTTCTCATG 1584279 24 100.0 TTTTCTCATG ........................ TGAGGGTTTT ========== ====== ====== ====== ========== ======================== 8 24 41 CTTTCAATTCTATAGTAGATTATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [230,353] Score: 0/0.18 # # Final direction: R [0,4.5 Confidence: HIGH] >NC_015518 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 371235 25 96.0 39 AAAGAGTAGT -........................ GGAGAGGGTGAAAAAAATGGGGAAAACGTATCTTGTAAA 371299 25 100.0 38 ATCTTGTAAA ......................... TCACTTACTTCAATATTTTTTGAAAGTGAAGAAACGCC 371362 25 100.0 38 AAGAAACGCC ......................... CTTTAAAATCGCATAGCGAATTATTCTCAAGTTTGATC 371425 25 100.0 39 AAGTTTGATC ......................... TGGAACATTTGTAAAAACAGGGCATTTTATGCCTTTACC 371489 25 100.0 39 TGCCTTTACC ......................... TGGAAAGGGAGGCGGCGCATATTTTTGGGCCTTCAATTA 371553 25 100.0 40 CCTTCAATTA ......................... GAAAATACGAAATCATTTATGCTGAATTTCCGCTTAATAA 371618 25 100.0 38 CGCTTAATAA ......................... GGTTCAAAACCAGCCTGGTATAATGAACCAAACCAGGT 371681 25 100.0 39 CAAACCAGGT ......................... AATTGAAGTGAATGGTACAAGATATTGGATAAACACGCC 371745 25 100.0 50 TAAACACGCC ......................... GAATTATCCGAAAGATGTACAAGATGTTTTTAACATTAGATAAACACGCC 371820 25 100.0 39 TAAACACGCC ......................... TACTATTTGTGATGAACATGAGCTTTGTCTTTCAAAATA 371884 25 100.0 39 TTTCAAAATA ......................... TCCCACTTAGGTTCGTCCAGGTTCATGAACCTCGGTGAT 371948 25 100.0 39 CCTCGGTGAT ......................... GCTTCTTTCAAATACTCCAGAAGTTTAGGGGAGTTGTCT 372012 25 100.0 GGAGTTGTCT ......................... TGTTTGTTTT ========== ====== ====== ====== ========== ========================= 13 25 39 CTTTCAATCCCTTTTGGGATGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [674,555] Score: 0/0.18 # # Final direction: R [0.37,4.91 Confidence: HIGH] >NC_015518 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 378457 25 100.0 38 CTCTGTAACC ......................... GAAATAGACACTGAATAAGTATTGTCTGTTGTCGGTTA 378520 25 100.0 38 TTGTCGGTTA ......................... AATATATAGAAGAGTGGTACCAGTCCTAGTAATGTGGC 378583 25 100.0 38 GTAATGTGGC ......................... TGGGATTGGGTTTCACTCACACCCATTCACCCCGATTT 378646 25 100.0 39 ACCCCGATTT ......................... ATTTTTATTGTGACATTAGATAGCGTAATACTGTAATGA 378710 25 100.0 38 ACTGTAATGA ......................... GCAGCTTTTGCAGCAGTAGCTTGGGATAATCGCAGTTT 378773 25 100.0 41 ATCGCAGTTT ......................... AATTCAATTTTACCTAACTCTCCTATTTTGACCTCTCTTTT 378839 25 100.0 CCTCTCTTTT ......................... AATTCTGATGG ========== ====== ====== ====== ========== ========================= 7 25 38 GTTGCATCCCAAAAGGGATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.20,-6.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [60.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [642,105] Score: 0.18/0.18 # # Final direction: F [4.68,0.64 Confidence: HIGH] >NC_015519 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 142412 30 100.0 36 CAAATTACGG .............................. TGGACTTAAAGTTCATCCCATCGCTGTCGCAATGTG 142478 30 100.0 37 TCGCAATGTG .............................. ACGACATGAACCAACCAGCAGAGATAACAGATACACA 142545 30 100.0 38 CAGATACACA .............................. TTTGTTATTATAAGGCTATTATGTTCTTTACATCTATA 142613 30 100.0 38 TACATCTATA .............................. CGGAAGCAAGAGAACCAATTACAATAACATTCAAAGGA 142681 30 100.0 37 ATTCAAAGGA .............................. CTTGCAACAGTGTGGGAACCAAAAAGGAACTTTAGTG 142748 30 100.0 37 AACTTTAGTG .............................. TTTTTTTACGTAGGCCGTTGTAATCCCTAATGATAGC 142815 30 100.0 36 TAATGATAGC .............................. TTCCCAACCGCCCCAGGATCTTTCCCGCCATGCTAA 142881 30 100.0 35 GCCATGCTAA .............................. TTTCTTGTGATGATCTTGATACATTGTAGTTAGGG 142946 30 100.0 35 GTAGTTAGGG .............................. CGTCTCCAAATTCGTTGTATTCTAGACCTATACTG 143011 30 93.3 ACCTATACTG ............................CT TTCTTATA ========== ====== ====== ====== ========== ============================== 10 30 36 GTTTATAGCCTACCTATAAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.80,-1.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [257,65] Score: 0.18/0.18 # # Final direction: F [5.73,0 Confidence: HIGH] >NC_015519 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 131159 30 100.0 36 CAAATTACGG .............................. TATTTTCTTTTTTTATGCATCATAGACACTTCAAGT 131225 30 96.7 37 CACTTCAAGT A............................. GGGAAAATACAGGTAAGGAATTGTTTATAAATGCGAA 131292 30 100.0 36 TAAATGCGAA .............................. TCACCAGGAACAAAATCAATTTCAGCAATCGATGAA 131358 30 100.0 37 AATCGATGAA .............................. AACGATATAAAAGTCAAAGATACTGATGTCATAGTGG 131425 30 100.0 38 GTCATAGTGG .............................. TCTCTTTCAGCAAATCTACGGGCTATCCTCTTGGCGTA 131493 30 100.0 37 TCTTGGCGTA .............................. GTGCTGAGCCGCTAAATGTGATTGTGCTGTTTACTTT 131560 30 100.0 37 TGTTTACTTT .............................. TCTGTTCCGTATCCTTTTTGCCATAAACCAGTTTTGT 131627 30 100.0 35 CCAGTTTTGT .............................. ATTGCTTCTTCAACACCTTTTTCAATTCCAGTGTG 131692 30 100.0 39 TTCCAGTGTG .............................. GTAGATAGAAACCCATACTTAGATAGAAGCCTTCTTAAC 131761 30 100.0 38 CCTTCTTAAC .............................. ACCAATGCAGTTAAATAAACTTTTTAATGATCTACTAA 131829 30 100.0 37 GATCTACTAA .............................. GTAATTATGGGGCCTTTTATTATCCTAACGTCAAGAG 131896 30 100.0 37 ACGTCAAGAG .............................. CATTTTATGCAGAAGAGGATGGATTAGACTTTGAAGA 131963 30 100.0 38 ACTTTGAAGA .............................. TCTTCTCTCCGTTGTCTTTGTTTCGCTGTCTCCCTCTC 132031 30 100.0 36 TCTCCCTCTC .............................. GTCCAATCGGTCTTTACCTCCACCATTTGAAACCTC 132097 30 100.0 36 TTGAAACCTC .............................. TCATCATGGTTATCCAGCTTATTAACGAGCTGGGCC 132163 30 100.0 36 GAGCTGGGCC .............................. TATCATCAGCCGCCGCTCCTTCCGCCGGTATGAATT 132229 30 100.0 36 GGTATGAATT .............................. TTTGGTATGATTTTCAGGGTGTTGGTGGTAGAACAG 132295 30 96.7 GGTAGAACAG .....................G........ AAATATTCTT ========== ====== ====== ====== ========== ============================== 18 30 36 GTTTATAGCCTACCTATAAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.30,-1.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [266,480] Score: 0/0.18 # # Final direction: F [4.91,0.37 Confidence: HIGH] >NC_015519 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 237134 30 100.0 35 NNNNNNNNNN .............................. GATGTTAACTTTATAAACATAAATGCAGACGAACT 237199 30 100.0 39 NNNNNNNNNN .............................. CATTTGAGGATCTGGAAGGGCTGACCTTAGCCTCCGGAG 237268 30 100.0 36 NNNNNNNNNN .............................. AGAAACGACACGACAAATTATGAAAGAAAGCAATTT 237334 30 100.0 38 NNNNNNNNNN .............................. CGGCTAACCGCATTATAATACGTGATGCAAGTGGCCGG 237402 30 100.0 39 NNNNNNNNNN .............................. GTTGATGAACATTCCATAGATAGTTTGCAATTTATGTGT 237471 30 100.0 36 NNNNNNNNNN .............................. ATTGGAGAAACTTTTAATAGAGCATAAAAGGACTGA 237537 30 100.0 40 NNNNNNNNNN .............................. AAAAAAGATATAGTTTTTTAGAAGTCTTGAATGATGAAGG 237607 30 100.0 40 NNNNNNNNNN .............................. TTTGATTGAGGATATATTCCTTGCTAATGATATAGCTTTT 237677 30 100.0 36 NNNNNNNNNN .............................. CCATAATCAGTAACTATTTCTCTGCTAGCATTTCTT 237743 30 100.0 41 NNNNNNNNNN .............................. TATTCCATTTTGTGTTTTGTATAGTTACCAAATCACCAAGC 237814 30 100.0 37 NNNNNNNNNN .............................. TTGCTTTGATGAGGTAGCACTATTTTTAGAAGTTGAG 237881 30 100.0 37 NNNNNNNNNN .............................. GTCACAATTTGGGCAATACCATGTTTCCATAGGCGTG 237948 30 100.0 36 NNNNNNNNNN .............................. AGGCTTGCCCAAAAAGCGGAATATTATTTGTACTTT 238014 30 100.0 36 NNNNNNNNNN .............................. TTTGCGGGTAAACAATAAGGCAGAAAACACAATAAC 238080 30 100.0 37 NNNNNNNNNN .............................. ATGGTGAAGTTATAGAAGATGATACTAGTAGCACTAA 238147 30 100.0 36 NNNNNNNNNN .............................. CATTTATTGCAAACTATGCACTTTCCTTTGCTTCAA 238213 30 100.0 38 NNNNNNNNNN .............................. AACTCTTCTAAAAAATCATTAAAACTAACTTTTTTTAC 238281 30 100.0 36 NNNNNNNNNN .............................. TTGTAATAACAATATAATGATGCAAATAAATAAAGC 238347 30 100.0 36 NNNNNNNNNN .............................. ATGAAGAAGCAGAGATTGACAAGCCAAGCTATGCAA 238413 30 100.0 36 NNNNNNNNNN .............................. TACCTTGGAACTGTTCGCTCATGATTATAATAATTC 238479 30 100.0 37 NNNNNNNNNN .............................. TAAGACTCAATCCAACTTTCCAAAAATTCACGCAAAG 238546 30 100.0 39 NNNNNNNNNN .............................. TGAAACCCTTTCTTCATTTTTGGCCAATGAGCTTCTAGC 238615 30 100.0 37 NNNNNNNNNN .............................. GTCGAAGAGGAGGTGGCGAATTGACGAGGGAAGAGCT 238682 30 100.0 39 NNNNNNNNNN .............................. GCAGCAAGTTTTGCGGCACCACTTTTGGCGATATTGAAT 238751 30 100.0 40 NNNNNNNNNN .............................. TGCCTATCCACTGTGGAAATGGCTGCTCTTCGGGCATTTC 238821 30 100.0 37 NNNNNNNNNN .............................. TGGAATATATGGTCCGGTATATGTTGATCTGTAGGAA 238888 30 100.0 38 NNNNNNNNNN .............................. CAGGACTATATTGGAAATATTCAAAGATGCACTTATTG 238956 30 100.0 38 NNNNNNNNNN .............................. TGATGTAATCATTGATTTCTTTAGGATTAAAACCACAT 239024 30 100.0 35 NNNNNNNNNN .............................. TCGGGTCATCAGACTGATCATCCAGTGTTGCCACC 239089 30 100.0 40 NNNNNNNNNN .............................. CACTAATGTTGGATGAATCATCACAGATACAAAATGAAAC 239159 30 100.0 41 NNNNNNNNNN .............................. ATAACAAGATTGAATTCAGTCAAAAGGAAATGGATAAGGCA 239230 30 100.0 36 NNNNNNNNNN .............................. TGAAGCTTGATGACATGAAGAATATCCTTAAAACCC 239296 30 100.0 36 NNNNNNNNNN .............................. ACTGGTACATGGCCGCAGTCTGTTCCTGTATGCTGG 239362 30 100.0 40 NNNNNNNNNN .............................. TGGACTACCAGACACAAAGAGATCGCGCCGATAAGGCCGA 239432 30 100.0 39 NNNNNNNNNN .............................. TTGTAAACACGCCCATCTCTAGTGACAGTATATGTCTTT 239501 30 100.0 36 NNNNNNNNNN .............................. TGGAGGTGTTGTAAATGGCATACAAAGGCCAACCCG 239567 30 100.0 37 NNNNNNNNNN .............................. CTTTGCACGAGTATGAAAACAGCCTCATCTTGCTCCC 239634 30 100.0 41 NNNNNNNNNN .............................. CAGAATACTACCTCTCCTTGCCAATCTTGTTTTAAACCATC 239705 30 100.0 35 NNNNNNNNNN .............................. CATGGGGAGTGCTGGGCAAGACTTCGTAGACGAAG 239770 30 100.0 38 NNNNNNNNNN .............................. GTTGATAATTGTATTTTTAATTTACTGTTTATCCTTGT 239838 30 100.0 36 NNNNNNNNNN .............................. ACGACAGACAGGATATAGAGGATTTGGTTACACGTG 239904 30 100.0 36 NNNNNNNNNN .............................. CTGAAAGTAGGAAGCCGACCGGCATAAACAAAGCCA 239970 30 100.0 37 NNNNNNNNNN .............................. AGGATAAAAGATAACTGGCAAGTGTTTCCTAGCAGGG 240037 30 100.0 38 NNNNNNNNNN .............................. CTATCTCCTGGTCGCCTTCAGCCAAGGCGAACATCCTT 240105 30 100.0 39 NNNNNNNNNN .............................. AGACATGGCATTGATTTCTTGGGATTCAGGACCTTTATG 240174 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 46 30 37 GTTTATAGCCTACCTATAAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.30,-1.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [73.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [459,128] Score: 0.18/0.18 # # Final direction: F [4.95,0.37 Confidence: HIGH] >NC_015519 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 147435 30 100.0 35 CAAATTATGG .............................. ATGCTTCTAAAGGCGGGACTAACAATCAAATACTA 147500 30 100.0 39 TCAAATACTA .............................. TTTAATACATATATGCCTTGGCGGGTCTGGAAAACGGCT 147569 30 100.0 36 GAAAACGGCT .............................. AATTTTCGGCTCTGATGGATTTAGCCCCGATGCTCT 147635 30 100.0 37 CCGATGCTCT .............................. TATCGTACACCTTAAAAGGTGTCTTGATAACTTTGAA 147702 30 100.0 37 TAACTTTGAA .............................. AATTCTAAAATCGTATTGGCTAAAAAACTAATATTAC 147769 30 100.0 36 CTAATATTAC .............................. AAATATGAATTTATAGATAAAATGGAGCAACAAGGC 147835 30 100.0 36 GCAACAAGGC .............................. TGTTTTTAAGTGCCCATGATTTTCCGGTCAGCGGCA 147901 30 100.0 36 GTCAGCGGCA .............................. ATCTTCTCGTATACATGATGGATAGCGAAAAAAGAA 147967 30 100.0 36 GAAAAAAGAA .............................. GGGAAGAAACCTTACAACTTGTGCTAGAAATGCGAT 148033 30 100.0 38 GAAATGCGAT .............................. GGTAATAGATAAACTGTATGGAGAGCAAAGCGAAATAT 148101 30 100.0 38 AGCGAAATAT .............................. AGCTATTTAATCTGGCAGTTTTATTCGTTACTGGGTCT 148169 30 100.0 35 TACTGGGTCT .............................. GCGAGTATATCATCTCTCATTTCACTTATGGCTTG 148234 30 100.0 37 TTATGGCTTG .............................. ATAGTAGTAACCGGAATAAACTCCTTCCAAAGCTCTC 148301 30 100.0 CAAAGCTCTC .............................. ACATAATTTATCCGTTTATCTATATCAACTGTAGCCATGGTTTATAGC ========== ====== ====== ====== ========== ============================== 14 30 36 GTTTATAGCCTACCTATAAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.30,-1.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [320,441] Score: 0/0.18 # # Final direction: F [4.77,0.37 Confidence: HIGH] >NC_015519 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 240664 30 100.0 39 TTCGTTCACC .............................. ACGACTATCCCGGGAGAACACCCGAGACTGCCCAATTTT 240733 30 100.0 42 GCCCAATTTT .............................. ACCAGAGCAGGCGCGAAACCCGTAGTTGCTGTTGGCATTGCC 240805 30 100.0 37 TGGCATTGCC .............................. TCGGCTGTCCTGGCTCGGGAATGAATTGAGAAGTGAC 240872 30 100.0 37 GAGAAGTGAC .............................. TATGCCTACAAAGTCTTTTTATCAAGTGCTATCCGCA 240939 30 100.0 39 GCTATCCGCA .............................. TCAAAAGAGGAGAGAATATCAAGAACTGGCAAGGGATTC 241008 30 100.0 38 CAAGGGATTC .............................. TCTACTTTGTCCCAGTCAATACATGCCCATATTTCATA 241076 30 100.0 38 ATATTTCATA .............................. ATAAACTTGTCAACCGATTCGCTAATAATACCTTCCAC 241144 30 100.0 36 TACCTTCCAC .............................. GGCTCTAATGCCCTAAATTGGTCTAACCCGTTCTTT 241210 30 96.7 35 CCCGTTCTTT .....................G........ TCACAATCTTTTTTTGCGCAATCACTCTTGTCTGG 241275 30 96.7 39 TCTTGTCTGG .....................G........ GCCCTTGAATTCACTTTTGATAATGAATATATCAAAGAA 241344 30 96.7 TATCAAAGAA .....................G........ GCTTTTCTTC ========== ====== ====== ====== ========== ============================== 11 30 38 GTTTATAGCCTACCTATAAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.30,-1.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [169,699] Score: 0.18/0.18 # # Final direction: F [4.5,0.55 Confidence: HIGH] >NC_015520 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 2671730 31 93.5 37 ATGGGTAAAG ..........T...T................ AACATCGGCCTATAAGTATTCATCTTCATCCATCTCC 2671798 31 96.8 38 ATCCATCTCC ..............................G TGCGAGTGCCCAAGAAGGCGTTGTTGGAGTGGCTACGA 2671867 31 100.0 36 GTGGCTACGA ............................... GGCATAAGGAGGTGTTCTCAATGCAGGTAGCAACAG 2671934 31 100.0 GTAGCAACAG ............................... CGTTAACAAATG ========== ====== ====== ====== ========== =============================== 4 31 37 CTTTTAACCCCTCACAGAAGGTATCTGCACC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:51.61%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.00,-4.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [408,108] Score: 0.18/0.18 # # Final direction: R [0.18,0.78 Confidence: MEDIUM] >NC_015520 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2336692 30 100.0 37 NNNNNNNNNN .............................. TGTTATCCGTCATAGTACCTCCCTGTTTTTTTATATT 2336759 30 100.0 37 NNNNNNNNNN .............................. ATAAACTTTTTGCGCCTTAAATTACCTTCCATAACTT 2336826 30 100.0 37 NNNNNNNNNN .............................. TGAATACTCCTGTGCCACTATCGCGCCCTTTCTCGAC 2336893 30 100.0 37 NNNNNNNNNN .............................. AATGGTAATATTTTGGATATTTTATCACCTTTGCCGC 2336960 30 100.0 35 NNNNNNNNNN .............................. CTTTGCCTGCGCAACATCATCATGAAACGCTATTT 2337025 30 100.0 37 NNNNNNNNNN .............................. TGAATACTCCTGTGCCACTATCGCGCCCTTTCTCGAC 2337092 30 100.0 37 NNNNNNNNNN .............................. AATGGTAATATTTTGGATATTTTATCACCTTTGCCGC 2337159 30 100.0 36 NNNNNNNNNN .............................. CATTAATAGCGTTATCTATAGAATTTTCTATATTAT 2337225 30 100.0 35 NNNNNNNNNN .............................. TTGAATCTAGTTTCACGCAAGAAAGGAAACCACGC 2337290 30 100.0 41 NNNNNNNNNN .............................. TCATCATATGGCATTGAAAATGAAAATGTTTCAGCATCATT 2337361 30 100.0 37 NNNNNNNNNN .............................. AAAAATCCATCAAGAATGGGAGTTGGGTTTATCATTT 2337428 30 100.0 37 NNNNNNNNNN .............................. ATTCTGCCCTGGTCATCCCTCACGCTGTCATCGGGAA 2337495 30 100.0 36 NNNNNNNNNN .............................. TGGATACATATCTTCATTTTCGGGTGAAGTAGCATC 2337561 30 100.0 36 NNNNNNNNNN .............................. TAGCTAACCATGCTGTTACGCTTTTGTCGTATTCCT 2337627 30 100.0 37 NNNNNNNNNN .............................. GTCACCTTGGAACTTTATTTTATTGTCTCCAATTACA 2337694 30 100.0 37 NNNNNNNNNN .............................. CCCAATTGTATATTTATATTATTTGGTATAGTCAAAT 2337761 30 100.0 36 NNNNNNNNNN .............................. CAGTAACTGTTATTGGATTAGTTCCACCATTTTTTA 2337827 30 100.0 36 NNNNNNNNNN .............................. CTGGTGAATTTACAGACCCCACAAAGTTTATTGTGC 2337893 30 100.0 36 NNNNNNNNNN .............................. CAGATTTGTCTGTAAATGAATTACAATGGATACTCA 2337959 30 100.0 56 NNNNNNNNNN .............................. AAATTAGAGTTTACTAATACGTTAGTATTAGTATTCTGTTTCAATTTCCCAATTTC 2338045 30 100.0 39 NNNNNNNNNN .............................. TGAATGGCTGGAAGTATACTGCAAACCAAAATTAGCGCC 2338114 30 100.0 37 NNNNNNNNNN .............................. GGATATATGCAAGGAGAATAGAAAGAGAGGGCAATGA 2338181 30 100.0 37 NNNNNNNNNN .............................. CCATAGCTAATGTGCTACAAGAATGGCGCATGTGGAG 2338248 30 100.0 37 NNNNNNNNNN .............................. AAAATGGTATTCCGGCTATAAGAGCAGTAAAGACGCG 2338315 30 100.0 37 NNNNNNNNNN .............................. AGTATAATGGCGGCTTATCCCATATGGCACTTTCGAT 2338382 30 100.0 36 NNNNNNNNNN .............................. CTTTGGTTTCCCAGCTCCAGTTGTAATGCTTATTTT 2338448 30 100.0 37 NNNNNNNNNN .............................. TTATCGCCTGCTCTAAATCTAATCGCAGAAAGCCTAT 2338515 30 100.0 36 NNNNNNNNNN .............................. CGACGATTACGTATAACATAGATAATGCGAAGTCGA 2338581 30 100.0 38 NNNNNNNNNN .............................. TGAGGTATTGGAATGGAAGTATTAACATACGAATTATC 2338649 30 100.0 36 NNNNNNNNNN .............................. TAAAATCGCTGCTACTATCCAAGTGATTGGATTGGC 2338715 30 100.0 36 NNNNNNNNNN .............................. ATTCAATAAGGTCAAGGATGCTATAATAGCACCATT 2338781 30 100.0 37 NNNNNNNNNN .............................. CCATGTAATATCTTGCGAAGTTAGTTTTGCGCTATTT 2338848 30 100.0 37 NNNNNNNNNN .............................. TTGAATATGTGAAACCAGTTCTAGAAGCCAAAGCCGC 2338915 30 100.0 38 NNNNNNNNNN .............................. TGAGAGCGGCAAACAGGCATATGAAGCGGTAAAAGCCG 2338983 30 100.0 37 NNNNNNNNNN .............................. TTTCGCCAACTTCTTTTATTTTGTTCCATGTATTGAT 2339050 30 100.0 37 NNNNNNNNNN .............................. GCGGGCGTGTGTACTACAGGTGTGGCCGCGGAGAATA 2339117 30 100.0 36 NNNNNNNNNN .............................. TGGTATGACTACATATAGATTTCGTAATGATGGCTT 2339183 30 100.0 38 NNNNNNNNNN .............................. AATCCCATATATGGGTCATATATTCTTTGGCATCTCAA 2339251 30 100.0 36 NNNNNNNNNN .............................. TTGCATAGCAAAAGCCGAAGAAAGAGAGGCGTTATA 2339317 30 100.0 36 NNNNNNNNNN .............................. GCCCGTTAAAAGGTAATAACAAAGATGTGTATTGTG 2339383 30 100.0 36 NNNNNNNNNN .............................. CAAGCGCGCTTGGAAGTGTGCCTGCTATTCTTTATG 2339449 30 100.0 37 NNNNNNNNNN .............................. GTCAGCATCTGGATTGTCGTATCCGAAATTTGCCTTA 2339516 30 100.0 36 NNNNNNNNNN .............................. TTATGGCAAAGCACGGCTTATCTGTTATGCAAGAGC 2339582 30 100.0 36 NNNNNNNNNN .............................. TTATGGCAAAGCACGGCTTATCTGTTATGCAAGAGC 2339648 30 100.0 37 NNNNNNNNNN .............................. TTCTATCCGTAACGCTTAATTTTAACCATCGCTCGAA 2339715 30 100.0 37 NNNNNNNNNN .............................. AATTACTATGTTATGATTGCCACAATAAGGAGCACAA 2339782 30 100.0 37 NNNNNNNNNN .............................. AATAAGCCGAGAACTTAACAATCTAATCCAAACCTCG 2339849 30 100.0 36 NNNNNNNNNN .............................. AGAGCAGCCGAATCGATATTTACTAGACATCGGCGA 2339915 30 100.0 36 NNNNNNNNNN .............................. CAGTAGCAGCTATATTAGAAAACTCTACAGAACTCT 2339981 30 100.0 37 NNNNNNNNNN .............................. AAATTTACAGCAGAAAGATAATGAACGTATTGCCTCG 2340048 30 100.0 38 NNNNNNNNNN .............................. TGAGGAAATGGCTGATGTATTCATTCGGTCGGGCGATT 2340116 30 100.0 36 NNNNNNNNNN .............................. TCAATGTATTTTTTATTTCTCTTTCTATTATTATTA 2340182 30 100.0 37 NNNNNNNNNN .............................. GAGCAGATGTCAAAAAAGCAGATTTTGTAGTATTGCG 2340249 30 100.0 36 NNNNNNNNNN .............................. CCATAGGAGATGAGCATGGAAGGTTTGCTGTTAAAA 2340315 30 100.0 37 NNNNNNNNNN .............................. CCACTCTTTCATCACTAATCATTATGATTTGTAAATT 2340382 30 100.0 37 NNNNNNNNNN .............................. CAAATTGGCCAAACGAATGGGTTTAATGGTGGACTAT 2340449 30 100.0 36 NNNNNNNNNN .............................. CATGGCCAGTGATACTTGTTCAGCTAAATGATACTC 2340515 30 100.0 37 NNNNNNNNNN .............................. ATATTTGTTCCATCATAAGCTATTCCATACATATAAT 2340582 30 100.0 37 NNNNNNNNNN .............................. GGGTATGCTGGGATTTCGGGAGCACTTGATTTTCGAT 2340649 30 100.0 38 NNNNNNNNNN .............................. TTATCCAACATATTTTGCTGTTTGGTAAGTCTGTCTAT 2340717 30 100.0 38 NNNNNNNNNN .............................. TAAAACATCCATTACTATTGAATCATGTATCTGTCCAA 2340785 30 100.0 37 NNNNNNNNNN .............................. GTGGACAAGGTTTCTTTGATACCATTCCAAGCATCTG 2340852 30 100.0 37 NNNNNNNNNN .............................. TCTTGGATTGGGAATATGTGTATCAATCCAATGAATT 2340919 30 100.0 37 NNNNNNNNNN .............................. TGGCTTTGTTGCGTATAGCACGCAGTGCTATGTCCAT 2340986 30 100.0 37 NNNNNNNNNN .............................. TTATATCACCTCATTTCAAATAATTCAATATAGTAAA 2341053 30 100.0 38 NNNNNNNNNN .............................. GAACTTGGAACATTGAGTCATAATCTTAATGATGTATT 2341121 30 100.0 38 NNNNNNNNNN .............................. GGAAATGAAAAAGAAATAGGTCAACTTTTATTGGACAT 2341189 30 100.0 37 NNNNNNNNNN .............................. CTCCAACTTGGCTGGATTCTTTTATACCCTTCACCAG 2341256 30 100.0 37 NNNNNNNNNN .............................. AAATCCATTCTGGTTTTGGGTTCTTCTTTGAACATTT 2341323 30 100.0 37 NNNNNNNNNN .............................. CCACTGATATTTCAGTATGAGATAAATTTTCATCCAA 2341390 30 100.0 37 NNNNNNNNNN .............................. GAACTACTTGGACTTGAACCACGCCATTCGCATCTGT 2341457 30 100.0 38 NNNNNNNNNN .............................. GGAATACTTTGTTTTAACTTATCATTCATCATAGCCAT 2341525 30 100.0 35 NNNNNNNNNN .............................. CCCATATCGTAAAGCCAGCCCAAGCATTATTGTCG 2341590 30 100.0 36 NNNNNNNNNN .............................. TGCATAAGTCTTACCGCTGCCAGTCTGCCCAACAAG 2341656 30 100.0 36 NNNNNNNNNN .............................. TATTAACGGTACTGACGATGTTATACTCCAATTTGA 2341722 30 100.0 35 NNNNNNNNNN .............................. GCAATGGAGTAAAATAAAAATGAACAGTACAGGCG 2341787 30 100.0 37 NNNNNNNNNN .............................. CTAACTCCGTCGTATTCTGCTTTTTCTGTCTTTTTCT 2341854 30 100.0 37 NNNNNNNNNN .............................. CAGAGGCAGAACAAGTAGTTCAGTGGTTAAATGAAAA 2341921 30 100.0 37 NNNNNNNNNN .............................. TTTCCCCGCCGATGTGTCGCTATCATCAAAAGTAGCA 2341988 30 100.0 37 NNNNNNNNNN .............................. CCATCACATCTGTCAATATTGGCTTTATCTTGTTCAA 2342055 30 100.0 37 NNNNNNNNNN .............................. GAAATACTACTGATGCGGAAGCATCTGGAAATGGAAC 2342122 30 100.0 35 NNNNNNNNNN .............................. ATGCCTGCTTGTCTTTACCGAAGATGAATTTTATT 2342187 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 83 30 37 GTTTCAATTCCTCATAGGTAGGCTAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [73.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2358,225] Score: 0.18/0.18 # # Final direction: R [0.45,4.87 Confidence: HIGH] >NC_015555 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2388534 30 100.0 37 TAAAAAATTA .............................. TGAACGATGAAGAAAAAAGACTATATAAAGCTAGAAT 2388601 30 100.0 38 AAGCTAGAAT .............................. GCTTTAAAAAACTTATTATACGAAACAAATATTTCGTA 2388669 30 100.0 36 ATATTTCGTA .............................. GGATGTAGAGGCTTTAGAAAAATATATCCATATTGC 2388735 30 100.0 36 TCCATATTGC .............................. GGAGATTTTGAAAATGAAATATGTTATAATTTCAAT 2388801 30 100.0 37 TAATTTCAAT .............................. AATTTTAAAAAAGGAGATTGATAAAAATGTTAAAAAA 2388868 30 100.0 37 TGTTAAAAAA .............................. CTATCGTAAAACTGATGCTTAACTCATCGCCTGCAAA 2388935 30 100.0 36 CGCCTGCAAA .............................. ATTTTAAGTTGCTCTAAGTTTTTGATTGCGTTGTTG 2389001 30 100.0 35 TGCGTTGTTG .............................. TTTGGATGTTTTTTAATAAAGGCAGCTTTGTAGCT 2389066 30 100.0 39 CTTTGTAGCT .............................. GAATAAAATTCCTCTTTTATTTTTTTGCCTATTTTTAAA 2389135 30 100.0 37 TATTTTTAAA .............................. TGCCTTGCAAAAGTGACGTTAAAACTGTCTTTGTTGG 2389202 30 100.0 37 TCTTTGTTGG .............................. GTTATTTAAGACTTAACTATACTTTTGATGATAGAAA 2389269 30 100.0 37 ATGATAGAAA .............................. GAAACAATTTGATCTGTCATACCACTAAAAGCAGTAG 2389336 30 100.0 35 AAAGCAGTAG .............................. TTTTGCATCTTTTTATCCCCTTTTATTTTTTTTCT 2389401 30 100.0 38 TTTTTTTTCT .............................. TTCTAATTCTTCTTCTTTTTCTAAAAAGTCATTTTTTG 2389469 30 100.0 36 TCATTTTTTG .............................. CTGCTGATGCAGTGTTTGCAGCGGTTACTGAGGGTA 2389535 30 100.0 36 ACTGAGGGTA .............................. TTACACCAGCAAACATAAACGATCCTAATATAACAT 2389601 30 100.0 37 AATATAACAT .............................. AAAGTTGCTACAAAAGTTGAATACTTTAGGGTGCCTC 2389668 30 100.0 37 AGGGTGCCTC .............................. AGGCTCTTGTGTCTCTGTTGTCATTAGTAATGTAATT 2389735 30 100.0 37 TAATGTAATT .............................. CAAGGTTTTTAAGGCATTTTTATATATATCCATACTG 2389802 30 100.0 37 ATCCATACTG .............................. TAGTCGACGATAAATTTATATTCTGGTTTCTTCCACG 2389869 30 100.0 36 TTCTTCCACG .............................. ACTCACTCACGCCGTATTTGTCAAGCCAATTACTGT 2389935 30 100.0 35 CAATTACTGT .............................. TTTACAAGCACAACATTTAATATGTCCGAAAGCGA 2390000 30 100.0 36 CCGAAAGCGA .............................. TTATAACACACGCACAACACAATGTCAACATACAAA 2390066 30 100.0 37 AACATACAAA .............................. GGCTATGATATAATTCTTGTTGCTCAAGACTTGCGTA 2390133 30 100.0 37 GACTTGCGTA .............................. TATATATCCTGCTTTTAGCTATACCAGTATTTGGAAA 2390200 30 100.0 37 TATTTGGAAA .............................. GTGGTTTGACTGTTAGTCTTACTCACTATTCTGATCC 2390267 30 100.0 37 ATTCTGATCC .............................. TGCCTTCTGTTCCAAATATAACGCAAGTTCAGACTTA 2390334 30 100.0 37 TTCAGACTTA .............................. CCAAAAATTATCAACGACAAAAACGATGATTTGTATT 2390401 30 100.0 35 GATTTGTATT .............................. GGAATATTATTCCAGCCTTGCACAAATTCTATGTA 2390466 30 100.0 38 ATTCTATGTA .............................. TTATTCTTGTTACTCGCAAGCTTTTTGGAGGTGCGCAG 2390534 30 100.0 37 AGGTGCGCAG .............................. CTCTTAACCAATTTTAACACTTTATCCACCTCACTAT 2390601 30 100.0 37 ACCTCACTAT .............................. ATCTTGATATATTGCTAAAAACTACTTCTTCGCTTGT 2390668 30 100.0 36 CTTCGCTTGT .............................. TCGCAGACAATTACTTGACAAATAAAGAAATAGACA 2390734 30 100.0 36 GAAATAGACA .............................. TTCTCTAAGAGATTTAATCCTTTTACAACATCGTCA 2390800 30 100.0 36 AACATCGTCA .............................. CATTGTTAATTATGACGTTATTCAATATAAAGAAAC 2390866 30 100.0 38 ATAAAGAAAC .............................. TAATAAAATAAATGAAATTAGCAAAGAAGAATTAAAGT 2390934 30 100.0 37 GAATTAAAGT .............................. CTATCAAGCACAACATCACCACTTGAAGGACTTACAG 2391001 30 100.0 35 GGACTTACAG .............................. TTTGAAGTGGAGTATTACAAACGTGACAAAAATTA 2391066 30 100.0 36 ACAAAAATTA .............................. TTGCAATATAATCATTTCCGTTAGACACTCTATTTA 2391132 30 100.0 36 ACTCTATTTA .............................. TTTATAGCAAACGTTTGTCCTCTACCCAAATCCAAC 2391198 30 100.0 36 CAAATCCAAC .............................. TGATATATATTTTGAAAGACTGCAAAAAATTACTAA 2391264 30 100.0 36 AAATTACTAA .............................. TATTCAGAAATAATTGTTTTAGAAGCGGTATATTGT 2391330 30 96.7 35 GGTATATTGT T............................. CAAAGACTTCCTAAAAAAGAGGTCTTTGCGTATGA 2391395 30 100.0 36 TTGCGTATGA .............................. ACGTCTTGCTAAAAAAGGAGAAACGTCTGTAGCCAT 2391461 30 100.0 38 CTGTAGCCAT .............................. TTGTATTTTCCAATAGTTGCCTTGCCAACCATAGCAAA 2391529 30 100.0 37 CCATAGCAAA .............................. TGTATTCACAAGGAATTAAAGCGACAACAAGGCAAAT 2391596 30 100.0 40 CAAGGCAAAT .............................. AAAATAGTCATTCCAGGCAAGCCAGTGCCAGCAGCAAGAA 2391666 30 100.0 39 GCAGCAAGAA .............................. AGACCCAAGACTTGTAACACGCATAACACAGTATGGGTC 2391735 30 100.0 36 AGTATGGGTC .............................. TTAACATTTACTTCAAGCAAAAACATAATCTTTTTG 2391801 30 100.0 36 AATCTTTTTG .............................. CGACAGAGGGCAGAAAATGGTAGAAATCGAAAAGAT 2391867 30 100.0 38 TCGAAAAGAT .............................. AAAGAGAAGAAGGTTACATTAAGCGTTTCCGGTATATC 2391935 30 100.0 36 CCGGTATATC .............................. CCAGCTAAAGATTAAGAACTTGAGAAGCAAGTTAGA 2392001 30 100.0 37 GCAAGTTAGA .............................. TTACTGCAAGTGTAAATTTTGCTGTCGGTGTTCCGTT 2392068 30 100.0 36 GTGTTCCGTT .............................. TTTCATTACTGCCATTGCATTTGGGTCATTGTACAT 2392134 30 100.0 35 CATTGTACAT .............................. TGGCAGGGCAATGTAATGCAATGGTTATGTTATGC 2392199 30 100.0 36 TATGTTATGC .............................. TTGCTATCATGAATGGTATTAATGCTCTTGTAACTG 2392265 30 100.0 35 CTTGTAACTG .............................. TATAGACGAAGATTTACCATTTTGAAAGGAGAGTA 2392330 30 100.0 37 AAGGAGAGTA .............................. GCAGTAAAAGAGGCAGAGGTAAACTTTTGAAAGAATA 2392397 30 100.0 38 TGAAAGAATA .............................. CGAAATATTGTTTTTGTTAATGAAGATAGGGGTAGTGG 2392465 30 100.0 38 GGGGTAGTGG .............................. TTGTTTGGAGAGTGGTGTATTTTCAAAGCAGGTGAAAG 2392533 30 100.0 36 CAGGTGAAAG .............................. TATCGGCAGAACTGGGACGCATATAATAGATTTTTT 2392599 30 100.0 35 TAGATTTTTT .............................. CGAATCGCTTACTCTCGACAAATTCCTATGATGAA 2392664 30 100.0 35 CTATGATGAA .............................. ATTATTAGCATATTCAATATTTTTATTCTTATGCA 2392729 30 100.0 37 TTCTTATGCA .............................. CTCCATAAAGAACCTTCGACTTATCACCCCAATCTAA 2392796 30 100.0 36 CCCAATCTAA .............................. TACGCATTGGCGATGTATGGATTAGTAATGTAAAGG 2392862 30 100.0 38 AATGTAAAGG .............................. TAGTAACATTACTCAAATTATAAGTGCCAAGACTTTTA 2392930 30 100.0 36 AAGACTTTTA .............................. GCTGATTGTGGTTGGAGTGCATGTTCAATATAAAGT 2392996 30 100.0 39 AATATAAAGT .............................. TTAGAAGTATGGCCGACTTTGAGGTTATGCATAAGGCCT 2393065 30 100.0 37 CATAAGGCCT .............................. AAACTATCAGGAGGGCTATCCTCCAAAGGGTTTTTGG 2393132 30 100.0 36 GGGTTTTTGG .............................. CGCTTTTATTTTATCTTTTAAATGTAAACCTATACA 2393198 30 100.0 35 AACCTATACA .............................. CTACAATTGTTCCTGTGTCATCAATTGTAATTATA 2393263 30 100.0 39 TGTAATTATA .............................. TAGAGGAGGTAATTCTATGTTACAAAAAGGAAGTACAGG 2393332 30 100.0 41 GAAGTACAGG .............................. GTTGTGTTGCTTCTCAAGGTGTTCCAATACTTTATTATCAT 2393403 30 100.0 36 TTATTATCAT .............................. CATATTCTGTTTTTCCTGCTCCCATTGGACCAACTA 2393469 30 100.0 38 GGACCAACTA .............................. TATTCTTTTTCAGGATGTTCTTCTACTTCGGAATCTGT 2393537 30 100.0 35 CGGAATCTGT .............................. GGCTATACTCCTGTCAACAAAGCAGGGGATACGAT 2393602 30 100.0 36 GGGATACGAT .............................. AGTTTTCAGGTCGCAAGGAGGCCTAACGTTTAAATA 2393668 30 100.0 37 CGTTTAAATA .............................. TTACAGCTTAAACGGGACATACAAAACAGCGAAATAA 2393735 30 100.0 36 AGCGAAATAA .............................. AGCTTTAAGTTTAGGTGAATTACCAACCATGTACAT 2393801 30 100.0 37 CCATGTACAT .............................. TCTTTAATGCTTGTTCTTGTTATATTACAAAATAAAT 2393868 30 100.0 35 CAAAATAAAT .............................. TTTTCTTCAGGAGTCGTTGCTTTTATAATTTTCAA 2393933 30 100.0 35 TAATTTTCAA .............................. ATTCGCAACTTCTTCAACATCAAGTAAATAATTTC 2393998 30 100.0 37 AAATAATTTC .............................. ATGTACCAACAGCATCCATTGCATAAAAGGAGGCATA 2394065 30 100.0 37 AGGAGGCATA .............................. GAAATTCCTGAACTGAAATATATTTCAGTTCAGGAAA 2394132 30 100.0 GTTCAGGAAA .............................. ACGTTAGAAC ========== ====== ====== ====== ========== ============================== 85 30 36 GTTTCAATTCCTTATAGGTAGGCTAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.70,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [44,165] Score: 0.18/0.18 # # Final direction: R [0.37,4.68 Confidence: HIGH] >NC_015555 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2458228 30 100.0 39 AAATAGACAG .............................. CAAAAATATGAGAAACCTAATACGACAGCACAGATATTC 2458297 30 100.0 35 ACAGATATTC .............................. TTGCAGCTGTTATTGCTAATCCAATGATAGCAGTA 2458362 30 100.0 35 GATAGCAGTA .............................. GGAGCTGCGGCTGGCGATATTTTATTAGGTGCTCC 2458427 30 100.0 36 TAGGTGCTCC .............................. TACTCGTCGGCACACTTGCAGGAATAGCATTTCCAT 2458493 30 100.0 36 GCATTTCCAT .............................. TCTCCAACCGTGCAAGAACAGATGCAGAAATAGCAC 2458559 30 100.0 37 GAAATAGCAC .............................. CAACATAAATGTTAAAAGACAATGCAGGTATACCTGT 2458626 30 100.0 34 GTATACCTGT .............................. TTGCAGTTGTGGCTGTTGCTGCTGCATAAAATAG 2458690 30 100.0 36 CATAAAATAG .............................. ATTCCTTTCGCCAGCTCTACTAAAATCAATACTTTT 2458756 30 100.0 36 CAATACTTTT .............................. CTAAATCACTTTTAACACAACTAAAATCAATATCCA 2458822 30 100.0 TCAATATCCA .............................. TATGTAATAT ========== ====== ====== ====== ========== ============================== 10 30 36 GTTTCAATTCCACTATGGTTAGATTAAATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [246,100] Score: 0.18/0.18 # # Final direction: R [0.18,4.87 Confidence: HIGH] >NC_015555 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2460483 30 100.0 37 NNNNNNNNNN .............................. GTAAATATTATAAATGGTGTAATTTCTTTTTTTTCAA 2460550 30 100.0 37 NNNNNNNNNN .............................. ATATATTGCATTAGCGAAAGCAGAATTAAACGATGAA 2460617 30 100.0 36 NNNNNNNNNN .............................. TACCTATTTGTTGTTCGACAGCCATTACAACATTTT 2460683 30 100.0 37 NNNNNNNNNN .............................. CTATTACTTTTGCCAAACTAACCACCTGCCTTTTCTA 2460750 30 100.0 35 NNNNNNNNNN .............................. TTCCTGAAAATAAGTAATTACTACCGTTAACATAT 2460815 30 100.0 36 NNNNNNNNNN .............................. TACCGAAAATTTCTGACGTGATCTCATGTACTTTTC 2460881 30 100.0 36 NNNNNNNNNN .............................. CCTTCTTGTATGACCTGACCATTTTGATCTGTAACA 2460947 30 100.0 36 NNNNNNNNNN .............................. AATTTCTATGAGACATTAGAAAATTTGCATGAAAAA 2461013 30 100.0 37 NNNNNNNNNN .............................. TAACCTTAATAGGTTCTATGTGATGTACTGTATCGTA 2461080 30 100.0 36 NNNNNNNNNN .............................. CTGGTTAGTTACAATAGTAGCACCAGTAGCAAGCAT 2461146 30 100.0 36 NNNNNNNNNN .............................. TACCGAAAATTTCTGACGTGATCTCATGTACTTTTC 2461212 30 100.0 36 NNNNNNNNNN .............................. CCTTCTTGTATGACCTGACCATTTTGATCTGTAACA 2461278 30 100.0 36 NNNNNNNNNN .............................. AATTTCTATGAGACATTAGAAAATTTGCATGAAAAA 2461344 30 100.0 37 NNNNNNNNNN .............................. TAACCTTAATAGGTTCTATGTGATGTACTGTATCGTA 2461411 30 100.0 36 NNNNNNNNNN .............................. TGCGCTGGGTGCAGCACAACCTAATTATGCAACTGG 2461477 30 100.0 36 NNNNNNNNNN .............................. GCCATTATGGCTATACATCAGATTATATTTTTTACA 2461543 30 100.0 37 NNNNNNNNNN .............................. TAAAAACGCCTGTGCAAGTACATCTTTAGCTTTAAGT 2461610 30 100.0 37 NNNNNNNNNN .............................. GCGGATATTGTGTGCGGACAGGCGAAAATAAAGTTTT 2461677 30 100.0 36 NNNNNNNNNN .............................. AAATGCAACAGTATTGTTGATTGATGACTTATACAA 2461743 30 100.0 36 NNNNNNNNNN .............................. TAATGGTTTTACTGTATCAACTTTTATGAGATCTGC 2461809 30 100.0 35 NNNNNNNNNN .............................. TTTGGCAGCAACAGCAATAGATTTTACTACAGCAT 2461874 30 100.0 37 NNNNNNNNNN .............................. GTTTGGAAAAGAGAAATATTGATGATGGGTATAAATT 2461941 30 100.0 36 NNNNNNNNNN .............................. AGAATCTGAAGCAGTTACACTTATAAATTCAACAAA 2462007 30 100.0 35 NNNNNNNNNN .............................. AGCAAAATGCTCTGGTATTGGAAGAGATAAATTAT 2462072 30 100.0 36 NNNNNNNNNN .............................. CATATATAAGAGCGGCGAAACCGCCGTCATGGCTAT 2462138 30 100.0 36 NNNNNNNNNN .............................. TTTTAAAAGTTCTTTTCTGAAATGCCTCACTTATGC 2462204 30 100.0 37 NNNNNNNNNN .............................. CGGAACGCTTGAATTAAAAAGCGATGTACATGGGCTT 2462271 30 100.0 37 NNNNNNNNNN .............................. GAATATAAAGATAAAGCTGATTTTACTACATTTGACG 2462338 30 100.0 36 NNNNNNNNNN .............................. TTTTAAAAGTTCTTTTCTGAAATGCCTCACTTATGC 2462404 30 100.0 38 NNNNNNNNNN .............................. GCTGCATCTGTCGGAAGTATATAAGCTATAACCTTCTT 2462472 30 100.0 36 NNNNNNNNNN .............................. TAATAATTTAGGTGCAAAAAATGTTGTAGATTATTT 2462538 30 100.0 36 NNNNNNNNNN .............................. TACGAAATGCAAACTTAGAGAAACATTTGTTGAACT 2462604 30 100.0 37 NNNNNNNNNN .............................. TTACGTCAGAGAATTCAAAGCCTCTTGTAAAGTTTTT 2462671 30 100.0 37 NNNNNNNNNN .............................. TACCTTTAAAAACGAGGGGATGGTGTCTAAATTCGCT 2462738 30 100.0 36 NNNNNNNNNN .............................. TGTTTTGTAGATACAGCGACTTGGGGATTGGATTTG 2462804 30 100.0 36 NNNNNNNNNN .............................. AACTGCTATACTGTTTTTCAGCTTTTGAATTTTTTC 2462870 30 100.0 36 NNNNNNNNNN .............................. TCCTCGTTTAATTCTTCTGTGCTTTTCTCTACCATA 2462936 30 100.0 36 NNNNNNNNNN .............................. CGGAGCAGAACTGGCACAATATGGCCTTGCGACATT 2463002 30 100.0 36 NNNNNNNNNN .............................. TATTCGATGATTTAGGTATGCCGTCAATAATGGTAG 2463068 30 100.0 36 NNNNNNNNNN .............................. TGTTTTGTAGATACAGCGACTTGGGGATTGGATTTG 2463134 30 100.0 36 NNNNNNNNNN .............................. TTTTGGCGTAAACGAACGACTTATAAAATATAAATT 2463200 30 100.0 36 NNNNNNNNNN .............................. AATTTGTATCAATCATACTTAGAAGCAAGGAAATGC 2463266 30 100.0 37 NNNNNNNNNN .............................. GATATAGTAATGCAGTTTCAGTTCATGTTTTACATAC 2463333 30 100.0 36 NNNNNNNNNN .............................. AATTCAATATAAATTGTACCGCCTACCTGCTTTGTT 2463399 30 100.0 37 NNNNNNNNNN .............................. CAAGTATACAAAAAACATCCATTTCTAAAAGAAAAAG 2463466 30 100.0 35 NNNNNNNNNN .............................. TGGTCTAATCTTGCAAGTGCGTTTCTCACATGAGC 2463531 30 100.0 36 NNNNNNNNNN .............................. TGAAGGAGGGGGAGGCAGCGTAAAAGAGACAGAACA 2463597 30 100.0 36 NNNNNNNNNN .............................. AATCAATTCCTGGCATGTTTCACAGACTGCATTCGT 2463663 30 100.0 36 NNNNNNNNNN .............................. TCTTTATACTCTCTCGTAGTACCGCCGAAATACCAA 2463729 30 100.0 35 NNNNNNNNNN .............................. TCATTTATAGCATTTTTAATTTGTTCATTTTTTGT 2463794 30 100.0 36 NNNNNNNNNN .............................. AGCAACTGGATCATCAAAGTTAAGAGGTGCTAAGTC 2463860 30 100.0 37 NNNNNNNNNN .............................. GCCCCAATTTCATCGGCTATAAAAGCCGAAGGTCTTA 2463927 30 100.0 36 NNNNNNNNNN .............................. ATCTGTTTTTGCCTTTATTTCATCTGCTGTTACATC 2463993 30 100.0 36 NNNNNNNNNN .............................. TTTTCTTATACCTCCACTATCCTGGTATATTTTGCA 2464059 30 100.0 36 NNNNNNNNNN .............................. CCTAATAGTTATGTCGTGAAATCAGGCGATACGCTT 2464125 30 100.0 36 NNNNNNNNNN .............................. CCAGAACAAGTAATAAATGGCACTTGGGGTGAGATA 2464191 30 100.0 38 NNNNNNNNNN .............................. CTATTTCATCTTTTACCGCATGCAGGTACTTTTTATCA 2464259 30 100.0 36 NNNNNNNNNN .............................. ATATAAGAATTTTAGGCAAGGTAGTATCTTTTAAAT 2464325 30 100.0 35 NNNNNNNNNN .............................. GCTCTTGGCAATATGCTTAAACTGCTTACAGATTA 2464390 30 100.0 38 NNNNNNNNNN .............................. CTATTTCATCTTTTACCGCATGCAGGTACTTTTTATCA 2464458 30 100.0 36 NNNNNNNNNN .............................. ATATAAGAATTTTAGGCAAGGTAGTATCTTTTAAAT 2464524 30 100.0 35 NNNNNNNNNN .............................. TTTCTCCAGTTCTCTATCATGTTTACACACTCATA 2464589 30 100.0 36 NNNNNNNNNN .............................. AAACATTGGAGGAGTTAAAAAAAGAATATAAAAAAT 2464655 30 100.0 37 NNNNNNNNNN .............................. GATTTCGCAAATAATGAATTCCTGCTTAAAGATGGCA 2464722 30 100.0 36 NNNNNNNNNN .............................. TGCTTAAAAATACAGATCATTGCAAAAGGATCACAA 2464788 30 100.0 37 NNNNNNNNNN .............................. TAAAAAGTACAAGTCAGATTACAGAGCCATATTGAAT 2464855 30 100.0 36 NNNNNNNNNN .............................. TAAAAGCAGCTTTAAATAAAATAATGGCTCAAATTG 2464921 30 100.0 36 NNNNNNNNNN .............................. TTTAATAGACAGAATATTGATAGAGCAGGGTTCCGA 2464987 30 100.0 37 NNNNNNNNNN .............................. CTTATGAAGTGGCATTAGATGTATCGAGGTTTGGTAC 2465054 30 100.0 37 NNNNNNNNNN .............................. CGAAAAAGAGATGATTAAAAACATTCCCGGGAGGCAG 2465121 30 100.0 36 NNNNNNNNNN .............................. TATGCTTTTTGTTGTTGCTCGTAAATTTGCAAATCC 2465187 30 100.0 35 NNNNNNNNNN .............................. TCAAGAAGATAATCAGTTCCAGAAGATATAACATA 2465252 30 100.0 37 NNNNNNNNNN .............................. AAAAATATTATGGTATTGATTTGTCAAGTGAATCTTA 2465319 30 100.0 36 NNNNNNNNNN .............................. TAAATCTTCTTTTGATGCTACAGTTGTTTCTTCTTC 2465385 30 100.0 36 NNNNNNNNNN .............................. GAGAGGCGTAAACAATGAAGTTTGCAAAAAAGTCGT 2465451 30 100.0 35 NNNNNNNNNN .............................. GTGATTGCTTTCCAGTGTGCTGCCGGTGCTCCTTT 2465516 30 100.0 35 NNNNNNNNNN .............................. TAATAACGCTCAAACAAATGGCAATATACAAATTG 2465581 30 100.0 36 NNNNNNNNNN .............................. TTACAACTACCACATAAAAGGATTTTTAAAAAACGC 2465647 30 100.0 36 NNNNNNNNNN .............................. AGGTGTTATGACTGTTTTGTCTATGTTAGTAGGTGC 2465713 30 100.0 36 NNNNNNNNNN .............................. TTAAGCGCCTTCTCTATTGGAGGAAGTTATGCCAAA 2465779 30 100.0 38 NNNNNNNNNN .............................. TTAGTAATGTAAAGGCAAAGTAATGCAAAGCGCAGCAA 2465847 30 100.0 36 NNNNNNNNNN .............................. TTAAAGGAGTTGGGTTTATGAGCAAATATATCGATG 2465913 30 100.0 36 NNNNNNNNNN .............................. TTACAAAACAAGAATAGAAGGGAGACCTTTATACAC 2465979 30 100.0 36 NNNNNNNNNN .............................. TATCATTTTCTGTATTAAGCTGTTGTCATCAAGCGG 2466045 30 100.0 36 NNNNNNNNNN .............................. CCATCAGATATAGCAGCAATTGTGCAGCGATATAGA 2466111 30 100.0 36 NNNNNNNNNN .............................. TGCATCTTCGCATGTGGAATACCAACTGTTTTCTTC 2466177 30 100.0 36 NNNNNNNNNN .............................. TACTAAAGCGAAAAGCGAAAGCTTGAAGCGGTAAAG 2466243 30 100.0 36 NNNNNNNNNN .............................. TACAAGTTATAGCTAAGGCTGATGGGCCTTGGACAA 2466309 30 100.0 36 NNNNNNNNNN .............................. TGCTGGGTTATCAACGAGACTATATTCGCTTAACTT 2466375 30 100.0 35 NNNNNNNNNN .............................. CAGGAAGGTAATTATTTATCACCATTGCCACCTTA 2466440 30 100.0 38 NNNNNNNNNN .............................. TAATGCACCAGCCAATAGCAGTAGGCAAGACCATTCAC 2466508 30 100.0 35 NNNNNNNNNN .............................. GAACTTGGATTTACAGAAAAAGTTAACAAATCATC 2466573 30 100.0 35 NNNNNNNNNN .............................. GCGATACGTATAGTAGTATCGTATGCAGAAAATGA 2466638 30 100.0 37 NNNNNNNNNN .............................. CACTGCAAATTTCTGCGAGTTTTTTCCAAGCTACAAC 2466705 30 100.0 35 NNNNNNNNNN .............................. GAATTAAAAAAGAAAATAGAAGAAGAATGTAAAAA 2466770 30 100.0 36 NNNNNNNNNN .............................. AGATGACTGAATAAATACTCTTTCGCCGATTTCTTC 2466836 30 100.0 36 NNNNNNNNNN .............................. CCTGATTTGTAGGCAACAGAATTACGAGTGAAGGTT 2466902 30 100.0 37 NNNNNNNNNN .............................. AGCAGTAATAGGAACAGTTATATATATGATTGTTAGG 2466969 30 100.0 36 NNNNNNNNNN .............................. ACCCGCATGACTGTAAGGCTGTATTGGTTACATCGA 2467035 30 100.0 38 NNNNNNNNNN .............................. GAATATTCAAAAGCGTATTTGAGAAACAAAGCAGAATC 2467103 30 100.0 36 NNNNNNNNNN .............................. ATAGCTATCTTTTAATACATCTATCCTTTCGTCTTC 2467169 30 100.0 36 NNNNNNNNNN .............................. GCCTTTTTGTATTTGTGATATTTTGCCTTTGCTCCC 2467235 30 100.0 36 NNNNNNNNNN .............................. GAATTTTGAAATCGCCACGTCCTGAAGATCATATAA 2467301 30 100.0 37 NNNNNNNNNN .............................. CATTTCCTTTCCCAGATATTAGAATTTGTCGAGACTC 2467368 30 100.0 36 NNNNNNNNNN .............................. TTGTTTGTCCATTGTCAGGTCATTTTTCTTAGCGAT 2467434 30 100.0 37 NNNNNNNNNN .............................. GTGCTTTCTTTTGCTGCATTATTTACTTTAGCATTTT 2467501 30 100.0 36 NNNNNNNNNN .............................. TTCTTGTTTTTGACGATATTTGTAAGTCGAAAATTT 2467567 30 100.0 36 NNNNNNNNNN .............................. AAAGCCTAAAAATATAACTAAAATTCCGATTGCGTA 2467633 30 100.0 36 NNNNNNNNNN .............................. GGTGAAAGAGAAAAAGGTGGTTATTCAGAAGAAGAA 2467699 30 100.0 36 NNNNNNNNNN .............................. TGCTGTAAAAACATTACAGCAACAATTAAATCAATT 2467765 30 100.0 35 NNNNNNNNNN .............................. CAATGGGGCAAAGATATGATAAATGGCTTTATAAA 2467830 30 100.0 38 NNNNNNNNNN .............................. GATAAATATTTGTTAGGTTATCATGCTATCATTTGCTA 2467898 30 100.0 37 NNNNNNNNNN .............................. CATAATCAACTATGTCACTAAATTTATATATTTTGTC 2467965 30 100.0 36 NNNNNNNNNN .............................. CTACATAGCTTGTCGTCATATTATCCCATATCACAA 2468031 30 100.0 36 NNNNNNNNNN .............................. AGGGCCAGATTCATATTTAGCAACACAAGAAATTAT 2468097 30 100.0 35 NNNNNNNNNN .............................. TTGAAGAGGAGGAAATCGAAGATGAAGAGGATTAA 2468162 30 100.0 36 NNNNNNNNNN .............................. AATAACTGAAACAAAAGAAGCCTATTATGATAATAA 2468228 30 100.0 36 NNNNNNNNNN .............................. AGAGACATAAAGAGATTTAAAGTAACGCCAGATATG 2468294 30 100.0 35 NNNNNNNNNN .............................. TTAAACGACAAAGTTGTTGTTAGAAAATGTTTGTT 2468359 30 100.0 37 NNNNNNNNNN .............................. TAACGCCACTTTCAATGTCAATTTTTTCATCGCCTTT 2468426 30 100.0 37 NNNNNNNNNN .............................. TGCTGTCAAAAGTCCTTTTGCTACCGCCTGTTTTACT 2468493 30 100.0 36 NNNNNNNNNN .............................. AAAAGTTTGTATGTATTGGCTTTTTTGTTTGCTCCA 2468559 30 100.0 36 NNNNNNNNNN .............................. AGACTATAAATGGATACCAGAAGAAGGCGAAGAAGA 2468625 30 100.0 36 NNNNNNNNNN .............................. CTCTCTGGCAAGTTCATCGAACCAATCATCGTCTAT 2468691 30 100.0 38 NNNNNNNNNN .............................. TGTTTGTCCATCGCATTGAAAACTTTGTGTAATACTGT 2468759 30 100.0 35 NNNNNNNNNN .............................. TGTATTCCTACAATCTTTGTAAATATCTTTGTAAA 2468824 30 100.0 35 NNNNNNNNNN .............................. TACCGTTAAATATACTTCTTATTCCAGAAATTACG 2468889 30 100.0 36 NNNNNNNNNN .............................. AAATTTGCTTCTCAGAAATCAGGGTATTGAATACGC 2468955 30 100.0 37 NNNNNNNNNN .............................. GATATGAACTTGACAGAATATTTCAGCGTAAATAAAT 2469022 30 100.0 36 NNNNNNNNNN .............................. GAACTGTAAGGTGAGAGAAAACAAGAGGACAAGCTA 2469088 30 100.0 37 NNNNNNNNNN .............................. CCTTCAATACTTTACAGAGGGCAGCGTACCAGAAGCA 2469155 30 100.0 34 NNNNNNNNNN .............................. ACATTGGCTCACCTGCTCTTATTGTTCCTAATAT 2469219 30 100.0 36 NNNNNNNNNN .............................. CAAAAAGCAGATGTTGTTATTTTTACTGACAAGGAC 2469285 30 100.0 37 NNNNNNNNNN .............................. CTCCTACAAGTATAAAACCTTCTTCTTCGCCTTCTTC 2469352 30 100.0 36 NNNNNNNNNN .............................. TTTCAGAAAGTCTAAAAGAAATAGTCAAAAAGTACA 2469418 30 100.0 36 NNNNNNNNNN .............................. TACTGTTATTAATATTCCTAGAGCATATATTTTAAA 2469484 30 100.0 37 NNNNNNNNNN .............................. TAGGAGAGTGATTTGTTTTGAGTGTTACCTTGTATAC 2469551 30 100.0 38 NNNNNNNNNN .............................. GGATATTACCTTTTACAGTTTTTACTGTCACTGAGTTT 2469619 30 100.0 36 NNNNNNNNNN .............................. AGTTTATGCATCTGTTATTGATTCTACTTATGCTAA 2469685 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 140 30 36 GTTTCAATTCCACTATGGTTAGATTAAATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [75.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [161,240] Score: 0/0.18 # # Final direction: R [0.27,4.87 Confidence: HIGH] >NC_015556 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 346952 24 100.0 36 NNNNNNNNNN G.G........TG........... GTGGCGCCTTTCGTCACGGGCAGGTCTAGGCATTTC 347012 24 100.0 36 NNNNNNNNNN ...........T............ CCCTCCGGCACCGCCACGCCCGCAGGATGTACTTTC 347072 24 100.0 36 NNNNNNNNNN ...........T............ GTGGGCGAGGTGTGGGGCATCGGCCGGCGCCTTTTC 347132 24 100.0 36 NNNNNNNNNN ........................ CGGCCTTGGCTGGAGGCCCATGTGGGCGAGCATTTC 347192 24 100.0 36 NNNNNNNNNN ........................ CGCCTCTTCCTGGGCGGCAAAGCGCTCGGCCATTTC 347252 24 100.0 36 NNNNNNNNNN ........................ TCGGAACCGTAGGCGTAATCCGAGTAATCCAATTTC 347312 24 100.0 36 NNNNNNNNNN ........................ GCGGTACCAACAAGCTGAACCCTGGCCAGGGTTTTC 347372 24 100.0 36 NNNNNNNNNN ........................ CTGCATGCCAGCCAGGCCACCCATGCCGTCATTTTC 347432 24 100.0 36 NNNNNNNNNN ........................ AACACCTGCATCACCGGCATGCCGTTCATCTTTTTC 347492 24 100.0 36 NNNNNNNNNN .........GTATA.....CTC.. AAAAGCACGGTCGGTGCGTCAGCCATGGCAGCAGCG 347552 24 100.0 36 NNNNNNNNNN .TCA.....GTATA.....CTC.. AAAGACACGAAACGTATGCGGCACAACTCGATGTTG 347612 24 100.0 36 NNNNNNNNNN .TCA.....GTATA.....CTC.. AAATTTGCCATGGTTCACCTCGATCCCGGCCGAGGG 347672 24 100.0 36 NNNNNNNNNN .TCA.....GTATA.....CTC.. AAAATGAAGGCGAAGAGCAGTGCGCCGGCGAATGCG 347732 24 100.0 35 NNNNNNNNNN .TCA.....GTATA.....CTC.T AAATCGGAGACACTGCCAGGGTTTCTTTTGCCCGG 347791 24 100.0 1 NNNNNNNNNN .TCA.....GCACA.....CACTT NNNNNNNNNN ========== ====== ====== ====== ========== ======================== 15 24 35 TGAGCTGCCTACACGGCAGTGAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.70,-5.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [4-33] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [60,836] Score: 0.18/0.18 # # Final direction: F [1.05,0.55 Confidence: LOW] >NC_015562 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 1056814 31 100.0 41 ATATTGTCCT ............................... TGTTATCACCTCCTTTTTGTTTTTTGAGTGGTTTGATAACA 1056886 31 100.0 37 TTTGATAACA ............................... TTTACATTTTAAGTTGCACTGTTTAAAATATATCACA 1056954 31 100.0 37 ATATATCACA ............................... AACAACTTGCTGAGGAGTGTGGTGTTTCAACTGTTGC 1057022 31 100.0 43 CAACTGTTGC ............................... TTTTGAAATCATCTATTATAGATGCATTAAGATCTTCAAAATA 1057096 31 100.0 37 CTTCAAAATA ............................... AATAAGGCAAGTCTTGAATTAAACTCTCAATTAGAAA 1057164 31 96.8 37 CAATTAGAAA ...............T............... AGATTCTGATTTTAAAAAAGGGAAAAAAGCATTCAAA 1057232 31 96.8 AGCATTCAAA ...............T............... TATTTCTTCT ========== ====== ====== ====== ========== =============================== 7 31 38 GTTAAAATCAGACCCATAGGGGGATGGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.06%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.60,-3.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [616,395] Score: 0/0.18 # # Final direction: F [0.37,0 Confidence: MEDIUM] >NC_015562 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 1045115 31 100.0 35 ATATTGTCCT ............................... TTAAACTCCATGTTCCATCATCATTTTCGGATAAA 1045181 31 100.0 38 TTCGGATAAA ............................... CCAGATAGAGTTGAAGAAACTGTGGAAAGTATTGACTT 1045250 31 100.0 42 GTATTGACTT ............................... GCATAATTATCACTCGTTAAATACTCTATCATGTGAGTATAT 1045323 31 100.0 37 GTGAGTATAT ............................... ATAATCTTATTTACGCCCTCGCTATCCACCAACCCCC 1045391 31 100.0 38 ACCAACCCCC ............................... CCCAATATACTGCCTGAAGAGGGACTATTTTATAATTT 1045460 31 96.8 TTTATAATTT ..............................C GCTTCTTTT ========== ====== ====== ====== ========== =============================== 6 31 38 GTTAAAATCAGACCCTTAGGGGGATGGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.06%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.30,-3.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [88,228] Score: 0.18/0.18 # # Final direction: F [0.78,0.18 Confidence: MEDIUM] >NC_015562 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1002273 30 100.0 37 ATATCGTCCT .............................. CTTTGTCCAAAACAAAAAATACTACGACGAGGAAACT 1002340 30 100.0 38 CGAGGAAACT .............................. CACATCTTCTACAATTTCTACAATATTCCTCTTTAATA 1002408 30 100.0 40 CTCTTTAATA .............................. CATGTAAGGATTTTCTATAAAAATATCTGCTATTCTAATT 1002478 30 100.0 42 TATTCTAATT .............................. CTGTTGGTTCTTTTTGTTACTGAGTATGTCTTTTGTGGTATC 1002550 30 100.0 42 TTGTGGTATC .............................. CTGTTGGTTCTTTTTGTTACTGAGTATGTCTTTTGTGGTATC 1002622 30 100.0 38 TTGTGGTATC .............................. CATTCCTTTATCTTTTATTTTTTCTCTTGCCATTTTGA 1002690 30 100.0 46 GCCATTTTGA .............................. CAAATTTATTGCGTTTATCCATGCCATCATTGTTATTTCTTTTGGG 1002766 30 100.0 45 TTCTTTTGGG .............................. CACAATTTTTCTACATCCTAAAATTTTGAAATCATTATATCCATA 1002841 30 100.0 44 TATATCCATA .............................. CAGATTTTAAACAGTTTTTAACAAGCATTATCAATAACCATGAG 1002915 30 100.0 37 TAACCATGAG .............................. CATTATAGAGTAATGACTGATGAAAACTATCCTTTTA 1002982 30 100.0 38 TATCCTTTTA .............................. CTTTTCATAATTATCCCCACAAAAACTTTTTTAAAAAT 1003050 30 100.0 38 TTTTAAAAAT .............................. TTCGTCTTTGTATATATTCGCACTACTATGACCCTTCT 1003118 30 100.0 42 TGACCCTTCT .............................. TTAAGAGTAATCAACCCTAAAGAGCTGGAAGGTATCCCATAC 1003190 30 100.0 TATCCCATAC .............................. CTTCAATACCT ========== ====== ====== ====== ========== ============================== 14 30 40 GTTAAAATCAGACCCTTAGGGGGATGGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [68.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [370,1223] Score: 0.18/0.18 # # Final direction: F [0.64,0.18 Confidence: MEDIUM] >NC_015562 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 1182108 23 100.0 54 GAATACTCAG ....................... ACTAAGCAAAATAAAGAGTTTATGAAGTTACTACAAGAAAGTTTGAATACTCAG 1182185 23 100.0 57 GAATACTCAG ....................... ATTACAATAACATCTTCATCATCAACTAAAACATACCTTCTAAGTTTGAATACTCAG 1182265 23 100.0 47 GAATACTCAG ....................... CGGTTGGCATGATGTTGAGTATTTAGTGGCAACGTTTGAATTACTCA 1182335 23 100.0 47 GAATTACTCA ....................... TTTCTATTATTATTGTTTTGTAATCATGTTCAAGTTTGAATTACTCA 1182405 23 100.0 51 GAATTACTCA ....................... CGTGGTCTAAATCTTCTATGTGTTATTCTTCTATAGTGTTTGAATTACTCA 1182479 23 100.0 49 GAATTACTCA ....................... TAATAACCTCAGCCTGTCCCTTTGTAAAACCAACAGTTTGAATTGCTCA 1182551 23 100.0 GAATTGCTCA ....................... ATTTTGACCG ========== ====== ====== ====== ========== ======================= 7 23 50 TCCATTAAAACAAGGATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.22%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [121,166] Score: 0/0.18 # # Final direction: NA [0,0 Confidence: NA] >NC_015562 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1280412 37 94.6 35 ATAAAATCAT ...........................GT........ TTGCTGGGTTTGGGATGTTAATTTATTTGGTAAAA 1280484 37 100.0 36 TTTGGTAAAA ..................................... TTGGCGGAGGACAAGGAACGCTTAAAATCATGGATT 1280557 37 100.0 38 ATCATGGATT ..................................... CCCTTTTTTCCTCGGTATCCAATAACACAGCCATTTTG 1280632 37 100.0 35 AGCCATTTTG ..................................... TGTTGAAAATATTAAATCACAAATATCCGTTTTAT 1280704 37 100.0 37 TCCGTTTTAT ..................................... TAACATAATCAATATATTATATTCACATTATCCCACA 1280778 37 100.0 37 TTATCCCACA ..................................... AAAACATTAGTCAATCTGATATTCAATTTATATATCA 1280852 37 100.0 TTATATATCA ..................................... CCTATAACTT ========== ====== ====== ====== ========== ===================================== 7 37 36 GTTTCCATCCTTGTTTTAATGGATGAGTAATTCAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.50,-4.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [83.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [424,532] Score: 0/0.18 # # Final direction: F [0.64,0.41 Confidence: LOW] >NC_015562 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1262543 37 97.3 34 AAGTTATAGG ............T........................ AAATAATTTGTTTCTGAAACAACAATCACATTAC 1262614 37 100.0 36 ATCACATTAC ..................................... GCCAAAGCTCAGGTGGTTGGGATATTGAGTTGTATT 1262687 37 100.0 GAGTTGTATT ..................................... TAATTATTGCAGAAGTTGTGGGGTTTGCTACGA ========== ====== ====== ====== ========== ===================================== 3 37 35 GTTTGAATTACTCATCCATTAAAACAAGGATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.90,-5.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [394,156] Score: 0.18/0.18 # # Final direction: R [0.45,0.78 Confidence: LOW] >NC_015562 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 1288700 31 100.0 36 AAATGTTTAG ............................... AAATCACACACACAACACAGTAATACTTCTGTGTGT 1288767 31 100.0 41 TTCTGTGTGT ............................... TTCGTTGAAAAAATACTTGAAAAAATTAAAGAACATGCTCC 1288839 31 100.0 37 AACATGCTCC ............................... ACTGCCACACCATTATTAAACAAATTACTTGAACATT 1288907 31 100.0 38 CTTGAACATT ............................... CATATATTAAGAGCCACGCATGCAACTAATTTAATCAA 1288976 31 96.8 41 ATTTAATCAA ...............A............... TAAGTTATTTAATTGGTTTATTTGAACCTGTAAAAGTTAAT 1289048 31 96.8 37 AAAAGTTAAT ...............A............... TCATAAATAATTTTTGGTGAAGTAACTATAAAATCTA 1289116 31 96.8 ATAAAATCTA ...............A............... TCTAAATCCT ========== ====== ====== ====== ========== =============================== 7 31 38 GTTAAAATCAGACCCTTAGGGGGATGGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.06%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.30,-3.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [316,611] Score: 0/0.18 # # Final direction: F [0.37,0.27 Confidence: LOW] >NC_015562 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 1289183 31 100.0 46 TTTAAACATA ............................... TGCTGTGCCTTATTAACTGCCAATGCAGTGGTAATCAATGTCTTTC 1289260 31 100.0 38 AATGTCTTTC ............................... AATTAAAACCCCTCCCATCCCAGAAGACAGACAATTGA 1289329 31 100.0 38 AGACAATTGA ............................... TTTCGTTTAGAAATTCAGTTTTTAGAAAATAAAGTAAA 1289398 31 90.3 40 ATAAAGTAAA A..............T..............G CGGCTCTTTTAATGCTTTCCATAGGTATTTAGTTAAGTAG 1289469 31 96.8 AGTTAAGTAG ...............T............... AGAAAAAAGAA ========== ====== ====== ====== ========== =============================== 5 31 40 GTTAAAATCAGACCCATAGGGGGATGGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.06%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.60,-3.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [799,258] Score: 0.18/0.18 # # Final direction: F [0.96,0 Confidence: HIGH] >NC_015562 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 1346391 31 100.0 35 ATATTGTCCT ............................... ATTGTAAATTGGTTCAAAGATTATGGCATTGATGT 1346457 31 100.0 37 GCATTGATGT ............................... TTTCACACTTGTTTATTATGAAATCCATACAAATCTT 1346525 31 100.0 37 TACAAATCTT ............................... TAGTCGTAACATCTTCTTATAGTTTTATCGTTAAATA 1346593 31 100.0 40 TCGTTAAATA ............................... CAATTTTCCGTCAGATTAAAATTTTGAAATCATTATATCC 1346664 31 100.0 CATTATATCC ............................... ATCCCACAGCGGTCTGATTTTAAAAAGTAAATTAACA ========== ====== ====== ====== ========== =============================== 5 31 37 GTTAAAATCAGACCCTTAGGGGGATGGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.06%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.30,-3.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [598,546] Score: 0/0.18 # # Final direction: F [0.37,0 Confidence: MEDIUM] >NC_015562 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 1491525 31 100.0 37 NNNNNNNNNN A.AAAAT.T..ATCCTAA.GG.......... TTGATTTTGTTTTATTTTTGATATTGATTTTATCGCT 1491593 31 100.0 46 NNNNNNNNNN A..............T............... GTTGTAGCACCACAACAACAAGGTGGACAGCAACAACAAGACCCGA 1491670 31 100.0 38 NNNNNNNNNN ...............T............... TAAACAGAATCGGAGCAAACATAACAGCAATGCTTGAG 1491739 31 100.0 41 NNNNNNNNNN ............................... AGGATGATGTTAAGAAAATCGTAGAGTTTCTTTCTTCATAA 1491811 31 100.0 36 NNNNNNNNNN ............................... TCAAGTTCAGCAATGCACTTAAGAAGTAAAATATCA 1491878 31 100.0 35 NNNNNNNNNN ............................... TGTGAATGCGATGATGGATTAACAGTTAAAGCATT 1491944 31 100.0 43 NNNNNNNNNN ............................... TACATGAATGATGCTAAAAGGGTTGTTATAGTTGTTGAGAAGG 1492018 31 100.0 37 NNNNNNNNNN ............................... GACAATGAAGAGCCAAACCCACTAAACAATAAACTTA 1492086 31 100.0 37 NNNNNNNNNN ............................... ACTTTCCAAACGCATAAGTCCAAATACTGCTAAAAAT 1492154 31 100.0 37 NNNNNNNNNN ............................... GTAACTTTGCAAGTAACTCAAGAATTTCCAGTAACTT 1492222 31 100.0 36 NNNNNNNNNN ............................... CTCATTTATTATGTGCCACACTTAAAAAAAGATTAT 1492289 31 100.0 36 NNNNNNNNNN ............................... AATTTGAAAATAAGCAGTTAAACAAATCTCTCAATA 1492356 31 100.0 41 NNNNNNNNNN ............................... ATAACTCCTCCTAATCCGCTGTCTAACATATTCGTTAAAAG 1492428 31 100.0 34 NNNNNNNNNN ............................... AATTTGTTACAACCAAACAACTTGCAGAAGAGTG 1492493 31 100.0 36 NNNNNNNNNN ............................... TATAGCCAGAAAATACCCATATTTCAAAACTCTACA 1492560 31 100.0 38 NNNNNNNNNN ............................... GTATTATTTGATGATTCCGATGAGTATGCTAAAAAAGC 1492629 31 100.0 37 NNNNNNNNNN ............................... TCGTACAGATTACCGTCTGAAATTTTGAAATTCTCAG 1492697 31 100.0 1 NNNNNNNNNN ............................... NNNNNNNNNN ========== ====== ====== ====== ========== =============================== 18 31 37 GTTTCCATCCCCCTAAGGGTCTGATTTTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.84%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.40,-7.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [130,598] Score: 0.18/0.18 # # Final direction: R [0,1.23 Confidence: HIGH] >NC_015562 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 1352425 31 100.0 35 ATATTGTCCT ............................... ATTGTAAATTGGTTCAAAGATTATGGCATTGATGT 1352491 31 100.0 37 GCATTGATGT ............................... TTTCACACTTGTTTATTATGAAATCCATACAAATCTT 1352559 31 100.0 37 TACAAATCTT ............................... TAGTCGTAACATCTTCTTATAGTTTTATCGTTAAATA 1352627 31 100.0 40 TCGTTAAATA ............................... CAATTTTCCGTCAGATTAAAATTTTGAAATCATTATATCC 1352698 31 100.0 41 CATTATATCC ............................... TAAATCCCCATCATCATCAATCCAATATGGTAAGCGTTGTC 1352770 31 100.0 41 AAGCGTTGTC ............................... TAAATCCCCATCATCATCAATCCAATATGGTAAGCGTTGTC 1352842 31 100.0 AAGCGTTGTC ............................... ACATTATATT ========== ====== ====== ====== ========== =============================== 7 31 38 GTTAAAATCAGACCCTTAGGGGGATGGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.06%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.30,-3.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [367,2194] Score: 0.18/0.18 # # Final direction: F [0.37,0.18 Confidence: MEDIUM] >NC_015562 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1515497 32 96.9 38 AAAAATTCTT ...............T................ TGGTTAATAAAAAATGTTATGGATATTTGGTTTTAAAA 1515567 32 96.9 32 GGTTTTAAAA ...............................T GGATATAATATACCTTTAACATCTACATACCA 1515631 32 100.0 43 CTACATACCA ................................ AAAGGTATCATGTATTCTCTAATTATTTTGATTATTCGCAATC 1515706 32 100.0 35 ATTCGCAATC ................................ CGAATGATAAGAGCCTTAAGGTTCGCATGCAAATT 1515773 32 100.0 CATGCAAATT ................................ GGACAATATT ========== ====== ====== ====== ========== ================================ 5 32 37 ATTTCCATCCCCCTAAGGGTCTGATTTTAACA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:59.38%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.40,-7.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [257,95] Score: 0.18/0.18 # # Final direction: R [0.18,0.78 Confidence: MEDIUM] >NC_015562 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 1491594 31 93.5 46 TTTATCGCTA -..............T............... GTTGTAGCACCACAACAACAAGGTGGACAGCAACAACAAGACCCGA 1491671 31 96.8 38 CAAGACCCGA ...............T............... TAAACAGAATCGGAGCAAACATAACAGCAATGCTTGAG 1491740 31 100.0 41 AATGCTTGAG ............................... AGGATGATGTTAAGAAAATCGTAGAGTTTCTTTCTTCATAA 1491812 31 100.0 36 TTCTTCATAA ............................... TCAAGTTCAGCAATGCACTTAAGAAGTAAAATATCA 1491879 31 100.0 35 TAAAATATCA ............................... TGTGAATGCGATGATGGATTAACAGTTAAAGCATT 1491945 31 100.0 43 TTAAAGCATT ............................... TACATGAATGATGCTAAAAGGGTTGTTATAGTTGTTGAGAAGG 1492019 31 100.0 37 GTTGAGAAGG ............................... GACAATGAAGAGCCAAACCCACTAAACAATAAACTTA 1492087 31 100.0 37 AATAAACTTA ............................... ACTTTCCAAACGCATAAGTCCAAATACTGCTAAAAAT 1492155 31 100.0 37 TGCTAAAAAT ............................... GTAACTTTGCAAGTAACTCAAGAATTTCCAGTAACTT 1492223 31 100.0 36 CCAGTAACTT ............................... CTCATTTATTATGTGCCACACTTAAAAAAAGATTAT 1492290 31 100.0 36 AAAAGATTAT ............................... AATTTGAAAATAAGCAGTTAAACAAATCTCTCAATA 1492357 31 100.0 41 TCTCTCAATA ............................... ATAACTCCTCCTAATCCGCTGTCTAACATATTCGTTAAAAG 1492429 31 100.0 34 TCGTTAAAAG ............................... AATTTGTTACAACCAAACAACTTGCAGAAGAGTG 1492494 31 100.0 36 CAGAAGAGTG ............................... TATAGCCAGAAAATACCCATATTTCAAAACTCTACA 1492561 31 100.0 38 AAACTCTACA ............................... GTATTATTTGATGATTCCGATGAGTATGCTAAAAAAGC 1492630 31 100.0 37 CTAAAAAAGC ............................... TCGTACAGATTACCGTCTGAAATTTTGAAATTCTCAG 1492698 31 100.0 AAATTCTCAG ............................... AGGACAATA ========== ====== ====== ====== ========== =============================== 17 31 38 GTTTCCATCCCCCTAAGGGTCTGATTTTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.84%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.40,-7.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [199,597] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_015562 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 1769306 31 100.0 40 ATATTGCCCT ............................... ATTACAATTTTACCCACATTATGTTCAATACACCAATTAA 1769377 31 100.0 37 CACCAATTAA ............................... TCTAAATCATCGATGTTGTTTATGTGATATGTTTTTA 1769445 31 100.0 38 TATGTTTTTA ............................... TCTCTACTCAAACCTGCTATTATATATACTTTTGAAAA 1769514 31 100.0 38 CTTTTGAAAA ............................... ATCTCTAATGCTCTCATCACATCACCTCACATCTTAGT 1769583 31 100.0 42 ACATCTTAGT ............................... AAGGATCTTATCAAATAATATATATCTTTTTAATTTCACTCC 1769656 31 100.0 44 ATTTCACTCC ............................... TAGATTGTATGAGCTTTACGTAAGTGCTAAAATGAAAAACTCTA 1769731 31 100.0 40 AAAAACTCTA ............................... GCGGGCAAATTGACTCCCCATGCCTCAATTTGTTAATCAA 1769802 31 96.8 TGTTAATCAA ..............................T TCAGTTACA ========== ====== ====== ====== ========== =============================== 8 31 39 GTTAAAATCAGACCCTTAGGGGGATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.84%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.30,-3.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [382,250] Score: 0/0.18 # # Final direction: F [0.78,0 Confidence: HIGH] >NC_015562 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 220886 29 96.6 40 CTTTTTTCTA ...T......................... CTATTTAAAGGACTTGTGGAGTGAATTACCTATACAGTAA 220955 29 100.0 39 TATACAGTAA ............................. CACTAACATAAAAAGAAGATAGAGAAGAGAAGATATAAG 221023 29 100.0 42 AAGATATAAG ............................. CACAGTCATAATCATAGCAAAACCCATTGCCAGCATGTAATG 221094 29 100.0 39 GCATGTAATG ............................. TTTTTTGAAAAAGAAGCCCAAATAAACGACCTAATGGAG 221162 29 100.0 39 CCTAATGGAG ............................. TTAAATTTTATTAATTCATCAATATATTTATATGTAATG 221230 29 100.0 39 ATATGTAATG ............................. TCATATTTGGAGGCAGAGGATAACAATTATCAGAACATG 221298 29 100.0 38 TCAGAACATG ............................. TTATATTAGTGAGATAGCACAAGCAACGGAGAGTATAG 221365 29 100.0 40 GAGAGTATAG ............................. TCGAGGTTGGTGTTTCGTGGCACAAAATTAGAAAACTTAG 221434 29 100.0 40 GAAAACTTAG ............................. TTAGAAGTGGATTTAGTGTTGAGAGAGGTTAAAGCAGTTG 221503 29 100.0 37 AAAGCAGTTG ............................. TTTCGTTGTTGAAAATATTCCTTAGACCATGTATCTG 221569 29 100.0 CATGTATCTG ............................. TAGGACAATAT ========== ====== ====== ====== ========== ============================= 11 29 39 TTTCCATCCCCCTATGGGTCTGATTTTAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.62%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.90,-3.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [301,469] Score: 0/0.18 # # Final direction: R [0,0.78 Confidence: HIGH] >NC_015562 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 295873 37 100.0 35 TTTCCAGAGA ..................................... CTGAGGGGGAAGAATGATTGATTTGGAAAAATTAG 295945 37 100.0 37 GAAAAATTAG ..................................... TAAGGTCAATAGAGAAGACAAACAAAGCACTTGAGTA 296019 37 100.0 42 CACTTGAGTA ..................................... AAAAAATTGAAAAACCAGATATTAAACCAGAAATTAAACCTG 296098 37 100.0 ATTAAACCTG ..................................... CCTATAACTT ========== ====== ====== ====== ========== ===================================== 4 37 38 GTTTCCATCCTTGTTTTAATGGATGAGATATTCAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.50,-4.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [61.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [330,600] Score: 0/0.18 # # Final direction: F [0.37,0.27 Confidence: LOW] >NC_015562 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 592861 31 100.0 35 TTGATTGACA ............................... GTCCCTACCATCCAATAAACAGATGGCTCGGGACT 592927 31 100.0 39 GCTCGGGACT ............................... TGCTACTAAAACGCAAAAAGTTTAAGGTTAAAGCAAAGA 592997 31 100.0 36 AAAGCAAAGA ............................... ATTTTTAAGAACTTTAAAACCGAAACATATATATAT 593064 31 100.0 47 ATATATATAT ............................... AATGGAAAAAGGCACAAAAATGGGCAATATTAAAAATTATTGATTTA 593142 31 100.0 36 TATTGATTTA ............................... ATATAATCAATATACAATATATACACATGTAGTTTT 593209 31 100.0 39 ATGTAGTTTT ............................... TGGTATGATTGTAATTGAATTCTAAATAATCTGATTCGT 593279 31 100.0 41 TCTGATTCGT ............................... CTTTTCTAAACCTCCAAGTGTGCTTCAAATCATTAAGTTAA 593351 31 100.0 39 ATTAAGTTAA ............................... CAACAATTTCTATCTTAATATCACTCTTTTCAACAATTT 593421 31 100.0 39 TCAACAATTT ............................... CAACAATTTCTATCTTAATATCACTCTTTTCAACAATTT 593491 31 100.0 38 TCAACAATTT ............................... GATGAAGCCCCAAAACCATTAAAAGCCATTTGGAAAGG 593560 31 100.0 39 TTTGGAAAGG ............................... GCTGGTGGAGCTGTTAAGTAATTTACATAGATATTAACA 593630 31 100.0 GATATTAACA ............................... TTTATTTTTA ========== ====== ====== ====== ========== =============================== 12 31 38 GTTAAAATCAGACCCTTAGGGGGATGGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.06%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.30,-3.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [869,731] Score: 0/0.18 # # Final direction: F [0.37,0 Confidence: MEDIUM] >NC_015562 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =========================== ====== 7992 27 92.6 47 CAATTCCTCA ....AT..................... TAATTCAAACACGGAGACAGTGCAAAAAGAGTAATTTTAAGGACAGT 8066 27 100.0 48 TAAGGACAGT ........................... TAATTCAAACATCTATTGTTTTATACTTATGTTCATGGTCTTTAACCT 8141 27 100.0 47 TCTTTAACCT ........................... TAATTCAAACAAGAGATATTCAAAGGAACAAGATGGGAAGATTTCAG 8215 27 100.0 48 AAGATTTCAG ........................... TAATTCAAACTATTAGAATATCTTCAAGGTATATAATGATAGAAAATT 8290 27 100.0 46 ATAGAAAATT ........................... CAATTCAAACAAGAACTACTAAAACAAAGACTGTTATTAGAAGTTA 8363 27 100.0 46 TTAGAAGTTA ........................... GTATTCAAACTAAACTTGTTGAAATGACAACAAATACTACAATTGC 8436 27 100.0 47 CTACAATTGC ........................... GTATTCAAACACGATGGGATATTTTCATCAGAGCCGCTTTATTTAGG 8510 27 100.0 45 TTTATTTAGG ........................... GTATTCAAACGTGGTTAGAGGAAAAATTAAATCCATTCTATGCAA 8582 27 100.0 46 TTCTATGCAA ........................... GTATTCAAACAAACAAAGTTGAAGAAAGTTATGGATTATTTAGATT 8655 27 100.0 TATTTAGATT ........................... GTATTCAAACC ========== ====== ====== ====== ========== =========================== 10 27 46 GTTTCCATCCTTGTTTTAATGGATGAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.96%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.40] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [80.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [57,538] Score: 0.18/0.18 # # Final direction: R [0.27,0.59 Confidence: MEDIUM] >NC_015562 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 717057 37 100.0 37 TATAATTAAT ..................................... TTCGCATACTTAAGCTCAGCAGCCACAGGCAATCTTG 717131 37 100.0 40 GGCAATCTTG ..................................... GAAATTACTTGTTTGAAGAAAGAAAGTCAATTAGGGACGT 717208 37 100.0 36 TTAGGGACGT ..................................... ACTTCCAAGGCTTTTCTGAAACATCTAATATGGTTA 717281 37 100.0 37 AATATGGTTA ..................................... AATCCAATATACGACCTTGGAAAAATTGAATTGCCTC 717355 37 100.0 37 GAATTGCCTC ..................................... ACTAACTTCTTCCCAACTTCATTTCCGTTCTTGTCAA 717429 37 100.0 36 TTCTTGTCAA ..................................... ATTACATTCATAGGTCAAACATGGTTGAGTATCTTG 717502 37 100.0 35 GAGTATCTTG ..................................... TTATAGAGCGAAGACGGGGCGGGATGGGAGGGAGA 717574 37 100.0 37 GGGAGGGAGA ..................................... AGAGGCATGGCATTGCCAGACGAATTAATGCAATATA 717648 37 100.0 35 ATGCAATATA ..................................... AGGGAATGGGGGTTAAAGAAAATTATTGAATTAAT 717720 37 97.3 42 TTGAATTAAT ...........................A......... ATATATCGCTGTGTGGTATTCTTATGTATGCGTTCGTTCCGT 717799 37 97.3 42 TTCGTTCCGT ...........................A......... ATATATCGCTGTGTGGTATTCTTATGTATGCGTTCGTTCCGT 717878 37 97.3 36 TTCGTTCCGT ...........................A......... ATACTATCCACCTATTCGTTTTTTCATATGAAATTT 717951 37 97.3 35 TATGAAATTT ...........................A......... TAGCCACCAACTTCCAAGTAAAGTGGAGCAAAAAA 718023 37 100.0 GAGCAAAAAA ..................................... CCTATAACTT ========== ====== ====== ====== ========== ===================================== 14 37 37 GTTTCCATCCTTGTTTTAATGGATGAGGTATTCAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.10,-4.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [7,617] Score: 0.18/0.18 # # Final direction: F [0.37,0.18 Confidence: MEDIUM] >NC_015566 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 501101 25 100.0 35 NNNNNNNNNN ..........T.............. AGGTGCATTTTGTTGCTGCCATCTGAGTTCTGGTG 501161 25 100.0 35 NNNNNNNNNN ..........T.............. GTCCACGATCTTTTTGTCGTCCGTGTTTACTGGTG 501221 25 100.0 35 NNNNNNNNNN ..........T....G......... GATGCGCTGGCTGTGGAGAATGCGGTGCTGAAGTG 501281 25 100.0 35 NNNNNNNNNN ......................... GTACAGTTATTGACAGAACTCCGAGAGGGCGCGTT 501341 25 100.0 36 NNNNNNNNNN ......................... CGGCAGCGTTGCAACCAGTACGCGCCCAGTGAAGTT 501402 25 100.0 35 NNNNNNNNNN ......................... GCTGGGCATGGCTGCAGAAATGGAGTCGATGTGTT 501462 25 100.0 1 NNNNNNNNNN ....A.....A....C.T..CA... NNNNNNNNNN ========== ====== ====== ====== ========== ========================= 7 25 35 CACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,4] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 89% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.00,-0.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [55.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [192,426] Score: 0.18/0.18 # # Final direction: F [1.65,0.45 Confidence: MEDIUM] >NC_015562 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 952222 37 100.0 36 AAGTTATAGG ..................................... GAACAAGAACCATACGACCTTGCGGCAATTTTTGGT 952295 37 100.0 37 AATTTTTGGT ..................................... TCCCAACCTCCTTCTCCAAGTTCTCAAATATCTTTCT 952369 37 100.0 35 ATATCTTTCT ..................................... TATATTCAAATTCTCTGTCTGCTATCTTATCAATA 952441 37 100.0 41 CTTATCAATA ..................................... TCAATTAACTGGTAATAGTCGCAAACTATATTTTTTCCCTC 952519 37 91.9 36 TTTTTCCCTC .....G...G..T........................ ATCCCTGCTTCTGTTATATAACTTCCGTAAATTCTA 952592 37 94.6 36 GTAAATTCTA .........G..T........................ AGATAATATTAACTCTTTGTGTCTTAATGCCAAATC 952665 37 94.6 36 ATGCCAAATC .........G..T........................ CGTATGCTTCAACACCTGCTTTGTATTCATCTACAG 952738 37 94.6 38 TCATCTACAG ........AC........................... AAATCTTTTCCGCTGGCGGGCTCCCAGCCAACCAGCCT 952813 37 94.6 38 CAACCAGCCT ........AC........................... TGAATAATGTTAAAAATTTCATCTAAATTTGTGTCACC 952888 37 100.0 39 TTGTGTCACC ..................................... TATGCATAGAAATTATTATCTTTTATTTTTTGTATTATT 952964 37 100.0 TTGTATTATT ..................................... ATTGTTTTGTT ========== ====== ====== ====== ========== ===================================== 11 37 37 GTTTGAATTACTCATCCATTAAAACAAGGATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.90,-5.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [68.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [439,42] Score: 0.18/0.18 # # Final direction: R [0.18,0.64 Confidence: MEDIUM] >NC_015563 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 4895219 32 100.0 32 NNNNNNNNNN ............AT.......T.......... GGAGGCGGGAGAGTCGCGGGCAGCTTTGGCGA 4895283 32 100.0 35 NNNNNNNNNN ................................ CTGATTACAAACAGGCCCATAGCACCCCCTCTTTG 4895350 32 100.0 34 NNNNNNNNNN ................................ CGCCGCCATCGGTGCGCGTGCGCTCGATGGAGAA 4895416 32 100.0 35 NNNNNNNNNN ................................ ATGCGCAGCTGGTTGCCCGGCACCCAGCCGCTGCC 4895483 32 100.0 35 NNNNNNNNNN ................................ CTGGTTTCGCGGGCCAGCACGCCGCTGCCCTGGTA 4895550 32 100.0 35 NNNNNNNNNN ................................ TCGATCAGCACGGCCTTGCCCAGGTCTTCGATGAC 4895617 32 100.0 34 NNNNNNNNNN ................................ TGACGATGATCGACGTGGCAGACCTGCGTTTCCT 4895683 32 100.0 35 NNNNNNNNNN ................................ TCCTGCTGTGACGCCTAGCATCGGCTATCCAGCCA 4895750 32 100.0 33 NNNNNNNNNN ................................ GTCCGCGGTCACGGTCTTGACGCGCGCAGCACG 4895815 32 100.0 33 NNNNNNNNNN ................................ CGAACTGGTGCATGACGCCAGAACGATGCTGAA 4895880 32 100.0 34 NNNNNNNNNN ................................ CCGAAGCATTGCCGGTGAGGGCAATGGAGCGCAC 4895946 32 100.0 35 NNNNNNNNNN ................................ GATTGCCCCCTGTGCCAACTGGCCGCCCAAGTGCA 4896013 32 100.0 33 NNNNNNNNNN ................................ GAACCAGCCCAGGTCCACCGGCTTACCCATCTC 4896078 32 100.0 36 NNNNNNNNNN ................................ CTTGACGAGCCAGCCCTCGCCGTCAATCTCAGGCTT 4896146 32 100.0 34 NNNNNNNNNN ................................ CCAGCTTGCAAATGTCGCAGGCGATATCGACGTT 4896212 32 100.0 33 NNNNNNNNNN ................................ GTCGCCCTGCGTCGGGATGTGCGGGTCAGGCCG 4896277 32 100.0 35 NNNNNNNNNN ................................ TGCAGCACCTGCCAATCTTCTGCTTCGCTGGAGTG 4896344 32 100.0 34 NNNNNNNNNN ................................ CGCATACGTTCTCCTAGCGTATTTTTGTGGAAAT 4896410 32 100.0 34 NNNNNNNNNN ................................ TCCTCTGCAACGTCATCAGCGGTCCCTTTAGGAA 4896476 32 100.0 34 NNNNNNNNNN ................................ TCGCTCTGGTGCCGATGCGCCTGACGCGGGCCAT 4896542 32 100.0 34 NNNNNNNNNN ................................ ACAGCAGACGCTACAGCGAGTCAGGCAAGCGGTG 4896608 32 100.0 33 NNNNNNNNNN ................................ GGCCGGGGTAGGTCGTTCTATTTCGGCTCCAAA 4896673 32 100.0 34 NNNNNNNNNN ................................ GGCTGTGGAGGCGCTTCTGTTTGAGCGTAGACCT 4896739 32 100.0 34 NNNNNNNNNN ................................ AAGCGGCGACTCCGTAGATCAGTGCCTCATGGGC 4896805 32 100.0 35 NNNNNNNNNN ................................ CTGTGCACGATCCTGCCACAAGGGCCGCGCACCAC 4896872 32 100.0 33 NNNNNNNNNN ................................ GCTGCGCATCACGGTCGTGCTGCTCAGCCAGTT 4896937 32 100.0 34 NNNNNNNNNN ................................ TTGGCATCCGTCACCCAGTCCTCGTACATCGGGC 4897003 32 100.0 33 NNNNNNNNNN ................................ CCGTCACCTGGTCATAAGCGGGTGCCGTATGGG 4897068 32 100.0 34 NNNNNNNNNN ................................ CAGGCTGGCAGGGCATTTCGGGCTGTGTGCAGAT 4897134 32 100.0 34 NNNNNNNNNN ................................ AAGTTCGGCACGTCCGAAGAGTTCAAGAAGTGGG 4897200 32 100.0 35 NNNNNNNNNN ................................ CTGATGAGGCCATGCACGCTCATGGCCGGCTGATC 4897267 32 100.0 34 NNNNNNNNNN ................................ TTGGCATCCGTCACCCAGTCCTCGTACATCGGGC 4897333 32 100.0 35 NNNNNNNNNN ................................ GTGCGCTACGACGCACCAGGGTGTTCGACCTGGTT 4897400 32 100.0 34 NNNNNNNNNN ................................ GACGGGCATGCGTACAGCCCTCACCCTTGAGCGT 4897466 32 100.0 1 NNNNNNNNNN ................................ NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 35 32 34 GTTTCAATCCACGCGCCCGCACGGGGCGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.20,-6.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [41.7-45.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [202,286] Score: 0/0.18 # # Final direction: R [0.74,4.91 Confidence: HIGH] >NC_015563 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 5963456 28 100.0 32 GTGTGGCAGT ............................ ATCCGCCGGCATCACCAGCATGTCGCGGTCCT 5963516 28 100.0 32 TCGCGGTCCT ............................ CATGGCGTAGGGTTCGCGGCACACTGCGTCAT 5963576 28 100.0 32 ACTGCGTCAT ............................ CAGGCCAAGCGATACGGGCCGTAGCTGAACGA 5963636 28 100.0 32 AGCTGAACGA ............................ CACCAGATAGGCCTGCTTCTTGGCCGGATTCA 5963696 28 100.0 32 GCCGGATTCA ............................ GTGCGGAGCTCGGATTCCTTGGCGTCAGCCCA 5963756 28 100.0 32 CGTCAGCCCA ............................ GCCAGAAGCCCAAACCTCGCGCGGCCGTGGCC 5963816 28 96.4 33 GGCCGTGGCC ...................A........ ATCGACGGCGCCGTGCATCACGTTGTCATCCCT 5963877 28 100.0 32 TGTCATCCCT ............................ CCGTAGCGCACCACAGCCTTTGATTCGTCCAT 5963937 28 100.0 ATTCGTCCAT ............................ GCAATGCTCT ========== ====== ====== ====== ========== ============================ 9 28 32 TTTCTGAGCTGCCTATGCGGCAGCGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [50.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [742,79] Score: 0.18/0.18 # # Final direction: F [0.86,0.74 Confidence: LOW] >NC_015563 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 5964042 28 100.0 32 NNNNNNNNNN ...............T............ AAGCCGGCGTTTCAGTTCGCTCCAGGCCTGCT 5964102 28 100.0 32 NNNNNNNNNN ...............T............ ATGGCGCGGCGCAGGTAGATCGCCTGGTCCAG 5964162 28 100.0 32 NNNNNNNNNN ...............T............ GCGGGATCGACGGGAGCCCGGGGCGCTGCGAT 5964222 28 100.0 32 NNNNNNNNNN ...............T............ TCGCTTTGGCTGGGCATCTTGGCGATTTCCAT 5964282 28 100.0 32 NNNNNNNNNN ...............T............ AAGCCGTCTGATCTTGCAACGCCAGGCGCAAA 5964342 28 100.0 31 NNNNNNNNNN ...............T............ TTGGGGATCAAGTTTGCGGATGGTCGTGGGA 5964401 28 100.0 32 NNNNNNNNNN ...............T............ GAGATGGAAAACGATGAGGTCGTGGACCGCAC 5964461 28 100.0 32 NNNNNNNNNN ........T................... CACCTTGCCCTCGCGCCACAGGAATTCCAAGC 5964521 28 100.0 32 NNNNNNNNNN ............................ TCATGCGCGCCGGGTAGCTCGGACGGCCAAAA 5964581 28 100.0 32 NNNNNNNNNN ...........................G GCGAGATCGGTCATTGGATGGCTCCGGTGGTT 5964641 28 100.0 32 NNNNNNNNNN ............................ AGCAGAGTGCGCACGTCATCAGAACTTGGGAT 5964701 28 100.0 32 NNNNNNNNNN ............................ GACAGGATGCCGTTCGCCGCGTCGATCTGGAA 5964761 28 100.0 32 NNNNNNNNNN ............................ GTTGATGACGGCATCCTCGGCCCCAAGACCTT 5964821 28 100.0 32 NNNNNNNNNN ............................ GAGGGTCAGGGGCAAAGCGGGCATTCACTGAG 5964881 28 100.0 32 NNNNNNNNNN ............................ TCTTTGAACAGTCCGTCAAAGATCCCGTCGAA 5964941 28 100.0 32 NNNNNNNNNN ............................ TGCCCATTCGGCTCAGCTTCATCTGCTCGTTT 5965001 28 100.0 32 NNNNNNNNNN ............................ GGCCAAACACGAATTGGCCCAGGGTCATCATT 5965061 28 100.0 32 NNNNNNNNNN ............................ TAGCGTTGCACCGGCACGCGCAGCCACTTCGG 5965121 28 100.0 32 NNNNNNNNNN ............................ CACTTGCCGCCGGCGGCTTCCAACACCTTGTT 5965181 28 100.0 32 NNNNNNNNNN ............................ AGCCAGGAGCGCGCGCAGGTCGCATGCGTAGA 5965241 28 100.0 32 NNNNNNNNNN ............................ GAGTATGAGCAGATGTGGCTCATCCGCCCCCT 5965301 28 100.0 32 NNNNNNNNNN ............................ GCAAGCGAGAGAGAGGGATACACGCTGACCGA 5965361 28 100.0 31 NNNNNNNNNN ............................ GGCTCGACCCATCGCCGCGCGCAAGCCGCAA 5965420 28 100.0 32 NNNNNNNNNN ............................ GAAGACAGCGCTGAGTTCTCACGATGCATCCT 5965480 28 100.0 32 NNNNNNNNNN ............................ CCCAAGGACAAGGCCATGGCCGTTGCCACGCT 5965540 28 100.0 32 NNNNNNNNNN ............................ ATGTGCACGATGGGACGCTGGCCCAGGCAGAT 5965600 28 100.0 32 NNNNNNNNNN ............................ AGAATTTCCGACGCTGCTCACATACCCGAAAT 5965660 28 100.0 32 NNNNNNNNNN ............................ TGAGCGGCCTCCAAAAGTTGCAGTTGATCGAT 5965720 28 100.0 32 NNNNNNNNNN ............................ CCGCTATGGCCGTCGCACACAATCAGCCGCAC 5965780 28 100.0 32 NNNNNNNNNN ............................ ATGGCCTTCCTGCTGATGCCGCTCATGATTCT 5965840 28 100.0 32 NNNNNNNNNN ............................ GATACGGGGACGCTCAGAATCGGCCGCTTGTA 5965900 28 100.0 32 NNNNNNNNNN ............................ ATCGCCGAAGCCACCGGCCTGCCGCGCGGGAA 5965960 28 100.0 32 NNNNNNNNNN ............................ TCCAGGAACTCATTTGTGATGCTCCTGAAAAT 5966020 28 100.0 32 NNNNNNNNNN ............................ TTCTACGACTACTCGACTGAGGCCGGCAGCAA 5966080 28 100.0 32 NNNNNNNNNN ............................ GAGCTCCTCAGGCGGCAACCTGAACCGCTGGG 5966140 28 100.0 32 NNNNNNNNNN ............................ CGCCAGCTCAGGCAGAGGGGCGTCGCCGTACA 5966200 28 100.0 32 NNNNNNNNNN ............................ AAAACATGGCTGGTGAATACGACCCAACAAGC 5966260 28 100.0 32 NNNNNNNNNN ............................ GCAGTCGCATAGTTCTCGGCCCAATATTCAAT 5966320 28 100.0 32 NNNNNNNNNN ............................ GCCGCAATTGCGTACTTTCGCGCGATTCCATC 5966380 28 100.0 32 NNNNNNNNNN ............................ ACGCCATGAAAGAACGACCGATCCTGTTTTCA 5966440 28 100.0 32 NNNNNNNNNN ............................ ACGGCAAAGATGGGAGATGACGGCTTCTATGA 5966500 28 100.0 32 NNNNNNNNNN ............................ CCGCTCCACGCGCACACTGGTGATCTCCAGCA 5966560 28 100.0 32 NNNNNNNNNN ..................A......... CGAATCAGGCCTAGGCGTTCAGCACATGCAGT 5966620 28 100.0 32 NNNNNNNNNN ............................ ATCCCGTAGATGGCCGGAAGCTGGTCCACGTT 5966680 28 100.0 32 NNNNNNNNNN ............................ AAGGACTGGAACGACTACCGGGCGCGCGGCCA 5966740 28 100.0 32 NNNNNNNNNN ............................ TGTGTCGAGAAGACCAGCGACGGCATCTACAA 5966800 28 100.0 32 NNNNNNNNNN ............................ GCCAGCAAGGCATTTGCCGCAGCGCAGTGGCT 5966860 28 100.0 32 NNNNNNNNNN ............................ ATGCCGATTGCTGAGGCGCCGGCCTTCATGCT 5966920 28 100.0 32 NNNNNNNNNN ............................ CTGGATCACATAGTCGCTGGCTTTGCTGGTCT 5966980 28 100.0 32 NNNNNNNNNN ............................ CGCCTGCTGGAAATGGCCCAGGCGCTCTACAA 5967040 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 51 28 31 TTTCTGAGCTGCCTACGCGGCAGCGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [79,131] Score: 0/0.18 # # Final direction: R [0,1.42 Confidence: HIGH] >NC_015565 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 584618 32 100.0 34 TGATATTGCT ................................ CCGTCAAAGAGGTTACTCCTGCTGCGAATCAGCA 584684 32 100.0 34 CGAATCAGCA ................................ AATCAAGGCTTGAAGCAGGGAAGCCATTATGGGA 584750 32 100.0 36 CATTATGGGA ................................ AAAATACTCTTTACCCCGGTAAGTTTAGAATAAATA 584818 32 100.0 34 AGAATAAATA ................................ CCAAGCGAGTTAAACAGCAAAAACCTGAAGCTAC 584884 32 100.0 36 CTGAAGCTAC ................................ AGCTTAAAAGGTAATAATTGGTTATCTCCATTAAGC 584952 32 100.0 34 TCCATTAAGC ................................ TGTTACCAAACATCCAAACCCCACCACTGAACAT 585018 32 100.0 35 CACTGAACAT ................................ TGAAGCTTCTGTATAGCGGTTAGATAGTTACTATC 585085 32 100.0 35 AGTTACTATC ................................ TGTATCTTTTGGTCGTGCTGAAAATACCTTATAAT 585152 32 100.0 34 ACCTTATAAT ................................ AAAACATTAAGGCCAAGTTTACCAAAATCCCTAA 585218 32 100.0 34 AAATCCCTAA ................................ TTAAACGACCTGACGAGTCAACCCACAAATGATA 585284 32 100.0 36 ACAAATGATA ................................ ATAGTCAACGTAAAACATCTGTGGCATAGCTTGGTT 585352 32 100.0 34 TAGCTTGGTT ................................ AGTAGGTTGTGAAGGTCCTCAACTGACTTAATAG 585418 32 100.0 34 GACTTAATAG ................................ TTTAGTAGCTTTTGGTTTTTTAGCAGTTGTAGTT 585484 32 100.0 36 AGTTGTAGTT ................................ CCAGTTTAGACGATATACAGGTAACAGCCAGGCTTA 585552 32 100.0 34 GCCAGGCTTA ................................ TGGAGACTCCCGCTCCAAATCTTCCAAAGTCTTA 585618 32 100.0 34 CAAAGTCTTA ................................ CAGCCTGAACGGTCTGTCCTCATCAACGAAAGCC 585684 32 100.0 34 AACGAAAGCC ................................ CTCTGTCAGAACAAACCCCTCTGGCACCGGGATC 585750 32 100.0 34 CACCGGGATC ................................ CCAAAACCCCGCTGGACCACCTACAAGCAAATTA 585816 32 100.0 34 AAGCAAATTA ................................ CTTTGGGACTGTCCCAACAATCCGCGATTATCTC 585882 32 100.0 34 CGATTATCTC ................................ ACCTTTAACGCTGAATGAGCAGGTGTCGATTTGG 585948 32 100.0 35 GTCGATTTGG ................................ CCGGAGTTTGAACCCAAAACATATGACCGGCTCTT 586015 32 100.0 34 ACCGGCTCTT ................................ AAATACTTTGGCAGGTCGAAGGCCAGTCATGGCG 586081 32 100.0 34 AGTCATGGCG ................................ CGGCTTATCCGCATTTACGCCCGGCCCATGATAG 586147 32 100.0 34 CCCATGATAG ................................ TAAAGACAACAGGTATGAAGAATATCCATTTTAT 586213 32 100.0 40 TCCATTTTAT ................................ TGTTATTTCAGTTATTACTATTTTGGCGCTAGGTCCATAA 586285 32 100.0 34 AGGTCCATAA ................................ TGTACCGAGATGATTATTACAACCCCAATAGCAA 586351 32 100.0 33 CCAATAGCAA ................................ TCTAGGGATTGCCACCTACCAAGTAAGACAACC 586416 32 100.0 37 TAAGACAACC ................................ TACATATTTGAAAGGAGGAATTTTTTAAACAAATATA 586485 32 100.0 34 AACAAATATA ................................ TTTAAGGAAGTCCAAAACAGCATTAGCGGCGTTA 586551 32 100.0 37 AGCGGCGTTA ................................ TGATACGCGCTCATTTTTCTTGCGTTGCAAATAACAT 586620 32 100.0 35 CAAATAACAT ................................ CATTTGCTGTTGTAAGTATCGTTTGATGTTATCCC 586687 32 100.0 35 ATGTTATCCC ................................ TGCTACAATATATTTTGCCTACGCGTGTAACTTCA 586754 32 100.0 33 TGTAACTTCA ................................ ATTCCCAAATTGCTGCTAACAAATTTAACCTTT 586819 32 100.0 34 TTTAACCTTT ................................ CCTTAAACAACGAGCCTAAAATGATAAACGCAAC 586885 32 100.0 37 TAAACGCAAC ................................ TTTAACAAGGCAGATAGGGCTTAGAACAGACGAGGCT 586954 32 100.0 34 AGACGAGGCT ................................ ATGAAAAGTATGGTTGGGGAAAACGGATACTTAA 587020 32 100.0 38 GGATACTTAA ................................ TGATTCTATTTCTCCACCGATATCAAAAGCGCTAGGAG 587090 32 100.0 37 GCGCTAGGAG ................................ TGGACAATTTGAAGAAGCAGCGGACCACATCATAGGC 587159 32 100.0 CATCATAGGC ................................ TGCCACGGTG ========== ====== ====== ====== ========== ================================ 39 32 34 GTCGCGCCCCACACGGGCGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [6,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.50,-9.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [182,127] Score: 0/0.18 # # Final direction: F [5.14,0.37 Confidence: HIGH] >NC_015565 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 589883 32 100.0 34 ACGTCCTGAC ................................ ATGGAAGTTGCTATCGATTATGGTCATCTTTTCC 589949 32 100.0 36 CATCTTTTCC ................................ AAAAAGAAAAAAACTGCCATTGGACGGCATGGATGA 590017 32 100.0 35 GCATGGATGA ................................ CACAATCGTTGCAATAAACACCAGCGCCGTGTATA 590084 32 100.0 35 GCCGTGTATA ................................ TCCTCCTGTTCCGCTTGCTCGTGATATTCATGGTA 590151 32 100.0 34 ATTCATGGTA ................................ CCTAGTAGCGGCTGGATAAGTTTACCTATAGATT 590217 32 100.0 35 CCTATAGATT ................................ AAATTTTATCACGAAAGTGAGGCAATTTCAATGAA 590284 32 100.0 34 TTTCAATGAA ................................ TTTTGAGCAGGCCAGACTTTCCACGGTTGAGATT 590350 32 100.0 35 GGTTGAGATT ................................ TTCCCGGTTATTTAAAGTAAGTCTTTGAAATAGTG 590417 32 100.0 34 TGAAATAGTG ................................ CCAAAAATATCTCCGCTTCTCAATCTCTGTCAGC 590483 32 100.0 35 CTCTGTCAGC ................................ TTCGCAAATGTGAGCGTCATAAAAATGGGAGGATA 590550 32 100.0 34 TGGGAGGATA ................................ CGGGTGTATTTTAATAAATTTACCCTGCACTGGC 590616 32 100.0 36 CTGCACTGGC ................................ ATGTCAAGCGAGCACCGAAAGGTGCTCGCAGCTGCC 590684 32 100.0 35 CGCAGCTGCC ................................ AACGTGAGAAATGCAGAAATAAGCAAAGCAGGGGA 590751 32 100.0 34 AAGCAGGGGA ................................ CAAAATTCCAGGGAGAACACCGCCTTTCTCATTG 590817 32 100.0 33 TTTCTCATTG ................................ TTTATACGATACTATGTTGCAGCTTGAATCTTT 590882 32 100.0 36 TTGAATCTTT ................................ TTCATGTGAAACATTTTTTCTCCCGGCCGGGCCGGG 590950 32 100.0 33 CCGGGCCGGG ................................ ATATCGTAGACTTTGGTTTTGCAGTTTGGGCAC 591015 32 100.0 34 GTTTGGGCAC ................................ GTGATAAACTTCCGCACAATTGCTCAATCCTCCC 591081 32 100.0 34 CAATCCTCCC ................................ TCCTTTATATGCTTGTCCAAGTTTTGCATAGCTT 591147 32 100.0 35 TGCATAGCTT ................................ TTGTATCGGCGACCTGTGTATGGGCCGTGGCCTGG 591214 32 100.0 35 CGTGGCCTGG ................................ TGCTGATACTCCTGCAGATGTACCCTCTGACGTAA 591281 32 100.0 35 TCTGACGTAA ................................ AACGTGACCGACTGGGTGGCCGAGGAAGACCAAGA 591348 32 100.0 33 AAGACCAAGA ................................ TGGCGGCTAATGCGTAAATATCGGGCCACATCC 591413 32 100.0 36 GGCCACATCC ................................ CAAACCATCCCCGGCATAATGAACCAGCCGCCGTCC 591481 32 100.0 34 GCCGCCGTCC ................................ TTGGAGTGTCAGTGCCTCAACAGGGAATAGGCTT 591547 32 100.0 34 GAATAGGCTT ................................ TCAATGCCCACGGTTTTTGCCACGCCGCCAACGG 591613 32 100.0 34 CCGCCAACGG ................................ GCCTTGGGTTTGCTGTTAAAGGCGCAATAGATTT 591679 32 100.0 35 CAATAGATTT ................................ ATTAATAAATAAAAATTAATTAGTTTTAAAAAAAC 591746 32 100.0 35 TTAAAAAAAC ................................ ATCCGGGAGAACCGCCATGATTTTGCGCTCCTTGG 591813 32 100.0 34 CGCTCCTTGG ................................ CCGGCCGCGCAGTGGTTCCACGGATGCCCAGACC 591879 32 100.0 35 TGCCCAGACC ................................ GCCTGACTACTGAGCTAGACAACAATTCTAGGCAG 591946 32 100.0 36 TTCTAGGCAG ................................ TGGACAGACGAAAAACTCGGAACATGCACAAGGGAT 592014 32 100.0 35 CACAAGGGAT ................................ ACGCCCAATTTGATTTAACATATCGTTCTTTTGAT 592081 32 93.8 35 TTCTTTTGAT ............G......T............ ATAAACGGAAAGACAGGAAAAATAACGCTAAATAC 592148 32 93.8 34 CGCTAAATAC ............G......T............ TTAGAAAGCAAAAAGATAGTTGTTAAACCGTGTG 592214 32 90.6 33 AAACCGTGTG ....T.......G......T............ TCCGCCGGGGTTAGTGCCCGTCCTTTCCTCCTG 592279 32 93.8 34 TTTCCTCCTG ............G......T............ TTAGAAAGCAAAAAGATAGTTGTTAAACCGTGTG 592345 32 93.8 33 AAACCGTGTG ............G......T............ ATGAAAAAACAAAACCGCCTTACGGCGGTCTAA 592410 32 93.8 GGCGGTCTAA ............G......T............ TTCACCACCG ========== ====== ====== ====== ========== ================================ 39 32 34 GTCGCGCCCCACACGGGCGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [6,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.50,-9.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [203,325] Score: 0/0.18 # # Final direction: F [5.28,0.37 Confidence: HIGH] >NC_015565 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 621902 37 100.0 39 ACCAAAGTCG ..................................... TACCAGAGGGGTCCATACCTTGGTGTTACCCTCTTTCAT 621978 37 100.0 38 CCTCTTTCAT ..................................... CATCGTGGGGCACTACACCAATCCGTGGTATGCACATG 622053 37 100.0 37 TATGCACATG ..................................... ATACTTGCTCATAATTCATCAATCCCTAAGATTCTAA 622127 37 100.0 38 AAGATTCTAA ..................................... TTTCAATATTTAATGCTAAACAGGTAAAAAACCCTGAT 622202 37 100.0 35 AAACCCTGAT ..................................... TATACAAACTACATTGAAAGGCCAGACAGCAAGAT 622274 37 100.0 35 ACAGCAAGAT ..................................... ATCTGCTTCTGATAAGGGTCCTGGAGGTAAAGACC 622346 37 100.0 38 GGTAAAGACC ..................................... AAACAAGATTGTTGATATATCAAAACTGCGGATACCAA 622421 37 100.0 37 CGGATACCAA ..................................... CAACATAATCTGCCTGCTTTTGTGTTACTTTTTTAAT 622495 37 100.0 38 CTTTTTTAAT ..................................... TGGCCTCATGCAGCTTTCATACGGCAGCCCAGTAAAAA 622570 37 100.0 40 CCAGTAAAAA ..................................... GTTCCCATCTCCATGAATAGCGCGCCAATGCGAGTCGGCA 622647 37 100.0 35 CGAGTCGGCA ..................................... CTACGGTTTTTAGTGTCACGAATAACCAATTCTCC 622719 37 100.0 38 CCAATTCTCC ..................................... CCTGCTTACCGTCAAACAGAAGCACCTCGTTTGCATCT 622794 37 100.0 38 GTTTGCATCT ..................................... ACACCTAAAACCATCCTATAACTGATTCGTAATCAGCA 622869 37 100.0 36 GTAATCAGCA ..................................... GTTAAGCTGGAGCTATTTCAAAAGGCGAAACTTCAA 622942 37 100.0 38 GAAACTTCAA ..................................... TAATGAAAAACTACTTAAGGTTTGGATTTGGTGTCTGC 623017 37 100.0 36 TGGTGTCTGC ..................................... AATAGGTGGCGGGCCGTTTCAAAAAATCCTGGGTAT 623090 37 100.0 37 TCCTGGGTAT ..................................... TATACCTTAAATAATATTTGATTTTATTGCTTTCTTT 623164 37 100.0 37 TGCTTTCTTT ..................................... GGATTAGCTATTGAAAACTATTTATTAAAAGGATTAC 623238 37 100.0 36 AAAGGATTAC ..................................... ATCCCCAAACCATTACTATCAACTATAACAATTTTT 623311 37 100.0 39 AACAATTTTT ..................................... TTATAAATATAATGATTAGCGCCATAGTTCGCAACTCTG 623387 37 100.0 38 CGCAACTCTG ..................................... TATCAATAAAAGAAACAATTATTTCACTATTTGCTGAT 623462 37 100.0 37 ATTTGCTGAT ..................................... TTTCTTAACGACTAAACAGTCCCTTAAGCCACCCCAA 623536 37 100.0 37 GCCACCCCAA ..................................... GAGTTTTCCCCGACCCGGCACCGGCCAGATCGAGAAT 623610 37 100.0 36 GATCGAGAAT ..................................... GTATAACAGGAAATAAACCTTTTCTGATTATTACAT 623683 37 100.0 36 ATTATTACAT ..................................... GGATACTTACCCAGGAATTCGAGAATATGCAAAAGC 623756 37 100.0 39 ATGCAAAAGC ..................................... CTACACCACCGGGAAGGTGGAAGTGATTGAGTATATCGA 623832 37 100.0 39 AGTATATCGA ..................................... CCCCCAAAATAGCGGTCTAAACATAAAACACATCAAACT 623908 37 100.0 38 ACATCAAACT ..................................... TAAATGGCCCTAGAAGCGAAGAAAACTAGCTGGTATGG 623983 37 100.0 38 GCTGGTATGG ..................................... ATATCAAATGGTAACTCATAACCATGTTTACATGTTTT 624058 37 100.0 35 TACATGTTTT ..................................... TTCTCCTAGACAACAAGCATGGAAACTATCTGTAG 624130 37 100.0 CTATCTGTAG ..................................... CAAGTTATCG ========== ====== ====== ====== ========== ===================================== 31 37 37 GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:51.35%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-4.50,-4.60] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [372,133] Score: 0.18/0.18 # # Final direction: R [0.18,0.27 Confidence: LOW] >NC_015567 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 501284 28 100.0 32 NNNNNNNNNN ............................ AGGTGCATTTTGTTGCTGCCATCTGAGTTCTG 501344 28 100.0 32 NNNNNNNNNN ............................ GTCCACGATCTTTTTGTCGTCCGTGTTTACTG 501404 28 100.0 32 NNNNNNNNNN ..................G......... GATGCGCTGGCTGTGGAGAATGCGGTGCTGAA 501464 28 100.0 32 NNNNNNNNNN .............C.............. GTACAGTTATTGACAGAACTCCGAGAGGGCGC 501524 28 100.0 33 NNNNNNNNNN ..T..........C.............. CGGCAGCGTTGCAACCAGTACGCGCCCAGTGAA 501585 28 100.0 32 NNNNNNNNNN ..T..........C.............. GCTGGGCATGGCTGCAGAAATGGAGTCGATGT 501645 28 100.0 1 NNNNNNNNNN ..T....A.....A....C.T..CA... NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 7 28 32 GTGCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 92% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [189,426] Score: 0.18/0.18 # # Final direction: F [1.65,0.45 Confidence: MEDIUM] >NC_015565 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 804318 37 100.0 40 NNNNNNNNNN ..................................... GAAAGGGCAGAAAGGAGAAGAAAAATGTTAATTAAAACAA 804395 37 100.0 35 NNNNNNNNNN ..................................... ACGAAAGGTGGGTAACAAAAATGGCAAACAATAAT 804467 37 100.0 38 NNNNNNNNNN ..................................... CATACTTAGCAGTACGTTGCTTATCACGCCGCCGTTTG 804542 37 100.0 38 NNNNNNNNNN ..................................... CGGCTATTTGTACTTGTCTTTCGTATATCTGCGCCAGT 804617 37 100.0 40 NNNNNNNNNN ..................................... TAGTCTATTGTCATCGTACTCCCGCCACAGCTCCGCATAC 804694 37 100.0 37 NNNNNNNNNN ..................................... GAAACTTAATCTCTCTCATCTTCTTTCCCTCCTATCT 804768 37 100.0 36 NNNNNNNNNN ..................................... AAATGTTACTGGCTGAAACACTGCCCGGAAGCCAAA 804841 37 100.0 38 NNNNNNNNNN ..................................... TATGGCGGGACACCACCATGCCAACGGCCATGTTTTGC 804916 37 100.0 35 NNNNNNNNNN ..................................... GACAAAGACAGGTCAGACTTGGCAGCATCAATTAA 804988 37 100.0 37 NNNNNNNNNN ..................................... TTTCAAACTTATTCTTGCTCCCCGCCCGGTCTGATTC 805062 37 100.0 35 NNNNNNNNNN ..................................... GCCCACCATAACAATGATTCTTTCCTTCAAAGGCA 805134 37 100.0 36 NNNNNNNNNN ..................................... GCTAAAAGAATTATTATTCCTAATGTTATTTAGCTG 805207 37 100.0 37 NNNNNNNNNN ..................................... ATTCCAACTGCATAGCCGTCTTGCCTAGGCCTGTCCC 805281 37 100.0 40 NNNNNNNNNN ..................................... AACCTCAACATAACACGTCTTAGGGCCTATATCTGCAATA 805358 37 100.0 36 NNNNNNNNNN ..................................... ATGATATTCCTACCGTATTAGCCAGCGTTGCAATGT 805431 37 100.0 38 NNNNNNNNNN ..................................... TCTGTAGGAACCTGTATATCCGGTGGATTGCCTGGATG 805506 37 100.0 36 NNNNNNNNNN ..................................... GCTGATATAACATATGGAATGTTGCAGGGGTGGAAT 805579 37 100.0 36 NNNNNNNNNN ..................................... ACCATCGGCCCGAAGGCCTAGGTTTCGTCCCGGAGC 805652 37 100.0 38 NNNNNNNNNN ..................................... AACTCCATATGGTCATTGGGGGCCGGTGTAGCAGTACA 805727 37 100.0 38 NNNNNNNNNN ..................................... TCCTTTTCGTATGTGTCGATGTGGACGGAGCCTTCCAC 805802 37 100.0 36 NNNNNNNNNN ..................................... GAGCAAAATCCCAGGTATCTATGGCAGTAACTGGCG 805875 37 100.0 39 NNNNNNNNNN ..................................... AAGCTAAAATAGCTCCCGCTGCTTTCATGCTAACGCCTT 805951 37 100.0 38 NNNNNNNNNN ..................................... TTCAATATCGGCAATTGCCTGTAATATTGGGTAAACTT 806026 37 100.0 38 NNNNNNNNNN ..................................... AACCAAGACAACGAATTTCGTCGGGTTGGAATAGCCCG 806101 37 100.0 37 NNNNNNNNNN ..................................... CCACTAATGGATACGATGATGTTCTCAAATTCATCGA 806175 37 100.0 38 NNNNNNNNNN ..................................... ATATGATCATCTATAATATTTAATATTTGTTTAATTAT 806250 37 100.0 38 NNNNNNNNNN ..................................... CTAATTCCTCCTTTGCTTCTGCCTTTTGATAGTAATAT 806325 37 100.0 38 NNNNNNNNNN ..................................... GAAATGGAGTGTTGTGGATTTATCAATACTCCGGAATT 806400 37 100.0 39 NNNNNNNNNN ..................................... AAAGATACAGAAATCAGATTAACTGTGATATGGAAAATA 806476 37 100.0 35 NNNNNNNNNN ..................................... AATACTTTAGCAAAATATTCTTCTTGTTCTTTTGT 806548 37 100.0 39 NNNNNNNNNN ..................................... AACTGCTTCAAACCAGTAAAACACCCTACCTATTGTTGA 806624 37 100.0 37 NNNNNNNNNN ..................................... GCGAGTACATTCCGGTTCATATTCGCCGGAAATGGCC 806698 37 100.0 38 NNNNNNNNNN ..................................... TCACAATCCCACCTTCCGGAACCGTCGCCCGGTGTCGG 806773 37 100.0 39 NNNNNNNNNN ..................................... ATTTATTATAAAAATGTATATAATGAAGAATATTACTTT 806849 37 100.0 40 NNNNNNNNNN ..................................... AGGCCGAAGCCGTCGGGTCGGTCACTGCCGTTGCAGCCAA 806926 37 100.0 37 NNNNNNNNNN ..................................... CGGTAAGTGATTTTGCCGCTCTTGAAGCCTGCTTCAA 807000 37 100.0 37 NNNNNNNNNN ..................................... GCCGAACAGTTTCTTTTAGGCTGACCGGGCAGAACCA 807074 37 100.0 38 NNNNNNNNNN ..................................... TCACGATTACATAAGTGGCCGTTAAAAAACCACATTTT 807149 37 100.0 38 NNNNNNNNNN ..................................... TCGAGCGAATTATGTGTGCTATATTGACGGCTTTTTCT 807224 37 100.0 38 NNNNNNNNNN ..................................... TTTTTCCACATGTAGTCATATATCTTTGAGTACTGCAG 807299 37 100.0 38 NNNNNNNNNN ..................................... AATATTTCTTATATGGATTTATTTTCAATGGGGAATGG 807374 37 100.0 38 NNNNNNNNNN ..................................... GAAGTTTTTTTGATACGGTATTCCCTTGGGCTGGCATA 807449 37 100.0 38 NNNNNNNNNN ..................................... TAAATAGGCAAATGAATCACGATAGTTAGGTGACGGAT 807524 37 100.0 38 NNNNNNNNNN ..................................... ATCAACACACCCATAATAGTAATACCTACAGGAAGTAA 807599 37 100.0 37 NNNNNNNNNN ..................................... ACAAACATCCAGACCCCATAAGGATATCTCTTAGCCC 807673 37 100.0 38 NNNNNNNNNN ..................................... GGAAATTCCATTAGCAGATTGTTCGTTCCTTCTTCATA 807748 37 100.0 38 NNNNNNNNNN ..................................... GAAAAAGTAATTCGTATGGGTAATTTTAAATTTTATAC 807823 37 100.0 39 NNNNNNNNNN ..................................... GAAATTTAACGTAACTAGTGAGCAGCTTTTAAATGCTTT 807899 37 100.0 34 NNNNNNNNNN ..................................... GTAGTCAGTTGTCTGTCCGAGCAGGTTTATAAGC 807970 37 100.0 36 NNNNNNNNNN ..................................... TTCAAGGGATTCCAACTAAGGGATGTTTGCGCTGGC 808043 37 100.0 38 NNNNNNNNNN ..................................... ATGGAAGGTAACCTTCGCCGTCGCAGTTGGGGCAGTAT 808118 37 100.0 38 NNNNNNNNNN ..................................... AGCGCCAGCAACTGTTTCACGTATGTTGAAGTCTTTTG 808193 37 100.0 38 NNNNNNNNNN ..................................... TTTCCAAAAGCTTTCCGTGGAACAGTGCGACTGATTCT 808268 37 100.0 40 NNNNNNNNNN ..................................... CGGTTTCAAAGCTCGCGCCGGTAATAGGGTTAAACTGCTG 808345 37 100.0 38 NNNNNNNNNN ..................................... AAGGAAACGTGCTTAAAGACAAAAAGATTAAAATTTAT 808420 37 100.0 36 NNNNNNNNNN ..................................... AAGCATATGGTGTTTACAAAGCCAAGGACAAGGTTA 808493 37 100.0 35 NNNNNNNNNN ..................................... GGTAGAAGTCGCCTGGTTTGAGTATTTCGAGCACT 808565 37 100.0 36 NNNNNNNNNN ..................................... ATGACCGCCTTGTTTGCATTATATATCGCTGAGTAT 808638 37 100.0 37 NNNNNNNNNN ..................................... GTGCTTACAGGTACATCAACGCCGACGTGGTATATGA 808712 37 100.0 39 NNNNNNNNNN ..................................... ACAACAATATGCGACTTTCCGAGCTGTCTTTTAACCTTC 808788 37 100.0 37 NNNNNNNNNN ..................................... ATTATTGCTATAGTTGATTCTGATTGTGATTATGCAC 808862 37 100.0 38 NNNNNNNNNN ..................................... ACAGGCATCAGCGCAATTCTGTGACTGTTTTTCAGCCC 808937 37 100.0 1 NNNNNNNNNN ...........G..............T.TG..TGGCA NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 63 37 37 GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.90,-4.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [55.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [187,60] Score: 0.18/0.18 # # Final direction: F [5.46,0.27 Confidence: HIGH] >NC_015571 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1515143 37 97.3 29 CTTCCGCAAA ....................................G AAGTGGCCAATGTTCGATAGGCTGCTCAG 1515209 37 100.0 29 GGCTGCTCAG ..................................... CTGCCATATTATATAAGTGTGATTATTTT 1515275 37 100.0 TGATTATTTT ..................................... TGATTCTTGAT ========== ====== ====== ====== ========== ===================================== 3 37 29 GTTGGATCTACCCTCTATTCGAAGGGTACACACAACA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.05%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.00,-10.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [32,819] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_015571 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 259611 37 100.0 43 GGTAATCAGT ..................................... CCAAAACTGCTAAGGCTGCAGCTCAGAATGCACTAGACCAGTT 259691 37 100.0 39 TAGACCAGTT ..................................... TATAGTTCAAGCTTCTGATACAGACTTGATTGAAGAAGA 259767 37 100.0 41 TTGAAGAAGA ..................................... CGGGAGTGCGACAAGATACTTGGCTCCGGCCGCACGATTGG 259845 37 100.0 35 GCACGATTGG ..................................... CGTATATCCGGCATTAGTAGGAGAGGTTATGATAA 259917 37 100.0 GTTATGATAA ..................................... TACTTGAGCGA ========== ====== ====== ====== ========== ===================================== 5 37 39 GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:59.46%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.50,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [287,133] Score: 0.18/0.18 # # Final direction: F [0.55,0 Confidence: HIGH] >NC_015571 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 293622 30 96.7 36 AATGGATACA -............................. GGGGATGAGCGGCGATGGCTTAATCGGGCGTCTGTT 293688 30 100.0 37 GGCGTCTGTT .............................. TTGCATACCGACCTCTTCCAACGAGCCTGCATCGCTC 293755 30 100.0 37 TGCATCGCTC .............................. TTCCAGCCTGCAGACGACAAAGCAGGCGCCTCGAAGG 293822 30 100.0 36 GCCTCGAAGG .............................. GGCGTACCCCCTATGACAGCTACCCGGCTACTCATC 293888 30 100.0 37 GCTACTCATC .............................. GATAACTGGTTCGAGGAGTACGAGCGTAATATGGATA 293955 30 100.0 36 AATATGGATA .............................. GGGGGGCGGGCAGCACGGCGGTGATCTGCTTTTCGG 294021 30 100.0 36 TGCTTTTCGG .............................. ACGATCGCCGGCGAGGATCTTACCGGTTACACGGTA 294087 30 100.0 34 TTACACGGTA .............................. CGGAATGCTACTTACTATGCGCGCGCATCCTCGC 294151 30 100.0 36 GCATCCTCGC .............................. GACGTTTATCTTATAGTCGAATTGATTGCTCATTGT 294217 30 100.0 34 TGCTCATTGT .............................. GAACAAGCTGGTCGTTCAGAATCATTATCACTTT 294281 30 100.0 36 TTATCACTTT .............................. CGGTAGCGAAAACTACTTTTTATTTCAGGACAAAGA 294347 30 100.0 37 AGGACAAAGA .............................. TCTTCATAGAACTGTTGTTTATTAGTGATGATATGTT 294414 30 100.0 35 ATGATATGTT .............................. TGAGCTATTTCTTTGTCGTCTTGTCTTGAGACTTG 294479 30 100.0 34 TTGAGACTTG .............................. TAGAACATACTATTAATAATACATCAAGAACATC 294543 30 100.0 37 CAAGAACATC .............................. AATCGGCGCAAAGGACTACGCCGCCGGCAACCACGGC 294610 30 100.0 35 CAACCACGGC .............................. TTCGCTCCCTTTTTAACCCCGAGCGCGGGCATATT 294675 30 100.0 CGGGCATATT .............................. TGTCATGAGA ========== ====== ====== ====== ========== ============================== 17 30 35 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.90,-0.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [63.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [51,154] Score: 0.18/0.18 # # Final direction: F [4.77,0.59 Confidence: HIGH] >NC_015571 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 296084 30 100.0 36 ATTGGTACTA .............................. TGTCATATAGATATGACATCTTAGATATTGGTACTA 296150 30 100.0 36 ATTGGTACTA .............................. TGTCATATAGATATGACATCTTAGATATTGGTACTA 296216 30 100.0 36 ATTGGTACTA .............................. TGTCATATAGATATGACATCTTAGATATTGGTACTA 296282 30 100.0 36 ATTGGTACTA .............................. TGTCATATAGATATGACATCTTAGATATTGGTACTA 296348 30 100.0 35 ATTGGTACTA .............................. TGTCGTAACAGCAGGGATGAACTATGCGCTGCACG 296413 30 100.0 34 GCGCTGCACG .............................. CGTTATACCTTCTATCGTCTTCAAATCTAAGGAT 296477 30 100.0 36 ATCTAAGGAT .............................. GGGTGGCGAGCAATGACGCGCTCCAGAACCCGACCG 296543 30 100.0 37 AACCCGACCG .............................. CCTTTGCCGTACGGGCGCGGCCGTAATGCGATCAAAG 296610 30 100.0 36 GCGATCAAAG .............................. AATACGTAGGAGGCGGACTATGATAGTAGCGATTAT 296676 30 100.0 36 TAGCGATTAT .............................. CGTCAGCGCTTCAAGTACTCCACCCGCTCCTACGAG 296742 30 100.0 37 CTCCTACGAG .............................. TTGTAGAATCTTATGTTTTTAGAGAACTATTTAATCA 296809 30 100.0 38 TATTTAATCA .............................. ATGAAATAACCCCAAAGATAAATCCAACTACAGGCAAA 296877 30 100.0 34 TACAGGCAAA .............................. TAAATAATCATTTAATTGTAACATTTTGTGAATA 296941 30 100.0 35 TTTGTGAATA .............................. ATAGTATCACACAACATCAAATGTTAGATGGATAT 297006 30 100.0 38 AGATGGATAT .............................. TTAGTAGGAGATGAAGACGACTTTTTTAACGTGGTCAA 297074 30 100.0 35 ACGTGGTCAA .............................. CTTTGTAGATTTATCGGATTATTTCGATATTATAA 297139 30 100.0 37 GATATTATAA .............................. TTAATGCAAAAACTATAGTCCTCAACGCTAAAGACGC 297206 30 100.0 36 CTAAAGACGC .............................. AGTATGCCTGACACGCGAGATCGCACCTTGTCGAGG 297272 30 100.0 38 CTTGTCGAGG .............................. ACGGGCGTTGTTCAGTCGGTCGTTATCGGAGTAATCGA 297340 30 100.0 35 GAGTAATCGA .............................. ACTATTCGGGAGGGAAGATATACAACGAGACCGAT 297405 30 100.0 38 CGAGACCGAT .............................. ACGGGGATGGCTCAGCCCTCGATTAGCCGGTTTCTGGC 297473 30 100.0 36 GGTTTCTGGC .............................. CTTGCCTTTAGAGCTCTTTTTTTATCAAGCTCATTG 297539 30 100.0 36 AAGCTCATTG .............................. GCATTCGCGATTTTTCCGACCTCGAACGAATCGTAT 297605 30 100.0 35 CGAATCGTAT .............................. GACGCAGGCGCGGGCGGACGTGTATAAAAAGTACT 297670 30 100.0 35 AAAAAGTACT .............................. TTCGGTGGCATCGTCTTCGTTCGCATACAGAACGT 297735 30 100.0 37 TACAGAACGT .............................. ATTTCTTACGCCCCATTCAAACTCATCCAGAAATTCT 297802 30 100.0 35 CAGAAATTCT .............................. TGTTTCAGGATTTACCGTTGTGTACGTTCTGAGCT 297867 30 100.0 35 GTTCTGAGCT .............................. GTGAACGGAGCGTCGAAACAATGCCACGTTCCGAA 297932 30 100.0 37 ACGTTCCGAA .............................. CCGAGCGATAAGACCACATAAGGAGAAACGATCCGCT 297999 30 100.0 36 ACGATCCGCT .............................. ACCTGCAATAGATATACGACATAATTTCGTATTGCA 298065 30 100.0 36 TCGTATTGCA .............................. CCTCTAAAATCATGTACGATTTTAGGGGGTTGTTTA 298131 30 100.0 35 GGGTTGTTTA .............................. AGTAATTATTCAAATTTCTTGTTTATCGGATCTCT 298196 30 100.0 35 TCGGATCTCT .............................. GAGGCCTCATTCGGCTCTATCTTCGCACCCGACAC 298261 30 100.0 36 CACCCGACAC .............................. TGTTGGCTTCCAACTTGTCGGCTTTGATCTCAACAT 298327 30 100.0 35 ATCTCAACAT .............................. CCGACCTGCTTCCACCCTCTTCCGCCTTTATTCAA 298392 30 100.0 36 CTTTATTCAA .............................. TCTTTTTTTGAAGAAAATTCATAGAAACAATGTAAG 298458 30 100.0 36 ACAATGTAAG .............................. GCTTTTTCACCTTTCGCGCCAATCGCTCAAAGCTCA 298524 30 100.0 36 TCAAAGCTCA .............................. GCTTTTTCACCTTTCGCGCCAATCGCTCAAAGCTCA 298590 30 100.0 35 TCAAAGCTCA .............................. GTGATACGATTAATACGTTAGCGTTATTCTTCATG 298655 30 100.0 35 ATTCTTCATG .............................. TTCTTTATCGTGATATTTTGTCCGCTCTTTTTGAC 298720 30 100.0 36 TCTTTTTGAC .............................. AGGTTGCGCATTTCTTCTCCATGCAAGATGTAAACA 298786 30 100.0 37 GATGTAAACA .............................. TTCATGTCTATTCCTCTTCTTTATAGGTTCCTAATTT 298853 30 100.0 34 TTCCTAATTT .............................. TAAATGCGTTCTCAATCACACCAATCTTGCCGGC 298917 30 100.0 35 TCTTGCCGGC .............................. CGTTCAGTTGTTCGCATTCAGTCGCCGACTGCCCC 298982 30 100.0 35 CGACTGCCCC .............................. ATCCACATTAGACGCATTCGCACTCGTCCAGCCCG 299047 30 100.0 35 GTCCAGCCCG .............................. CTGATGACATACAAAGAGTATATCGCGGCAATGGT 299112 30 100.0 36 CGGCAATGGT .............................. TATCCTCGTACAGGTTTGCCACCTTGTCGGAGACGT 299178 30 100.0 38 TCGGAGACGT .............................. ATGCTTATTCAAAGGTGGATCGCGTGGTGATTTCTCAG 299246 30 100.0 36 GATTTCTCAG .............................. CCTTCTACGATTACTGCCATTTACTTTACTTTTTTT 299312 30 100.0 35 TACTTTTTTT .............................. TAATAGTCCACACCCCAACGCCAAAGGATGAATCG 299377 30 100.0 36 GGATGAATCG .............................. CGGTAATCCTCCAGCGACGCCAGCCCGTCCGTGGCG 299443 30 100.0 36 GTCCGTGGCG .............................. AACGTCGATGTCTCAGGCGACTATGGCACAGCCACA 299509 30 100.0 36 CACAGCCACA .............................. CGACATGCCACCCGCAGGACACGATATGCCGCGAGA 299575 30 100.0 36 TGCCGCGAGA .............................. GCGGCCCTTGTCGGCCGCTCTCTCTTTCGTTATCGA 299641 30 100.0 36 TCGTTATCGA .............................. GCGTACCCGCCTCTGCAGTTGCAAACACAGCTGCGA 299707 30 100.0 35 ACAGCTGCGA .............................. CCAGCCTTGTTTTTCGAACCCGAGGTGGCAAGGAC 299772 30 100.0 37 TGGCAAGGAC .............................. GTACAGGCGATTACGGGCGTGGTGGGTAAAGAGTTCG 299839 30 100.0 36 AAAGAGTTCG .............................. CCGCGTCGGACAAGTCCGCGGGCTGGAGACCCAGTA 299905 30 100.0 36 AGACCCAGTA .............................. TTTCTCTGACATTAAAATAGAAATCATCGCTGAAGA 299971 30 100.0 35 TCGCTGAAGA .............................. CCTCCGCCCCCAGCCCGCTATCGACCCCCACCTGC 300036 30 100.0 36 CCCCACCTGC .............................. AGGGCTGACGTGTATAAAAAATACCTGGGGGATAAT 300102 30 100.0 36 GGGGGATAAT .............................. CTCAACCAGTTCGGGCTGGAGGCGTCGGAGGCGGCT 300168 30 100.0 35 GGAGGCGGCT .............................. ACTTCGCCGTCCGCGGTAATGTGACCAATACCGAC 300233 30 100.0 35 CAATACCGAC .............................. CACCCACCCACGCCAGCACCCTCTGCCACCAGCGC 300298 30 100.0 37 CCACCAGCGC .............................. AACTCAAAAAAACTACAATAAATATGCCAACAGTAGT 300365 30 100.0 CAACAGTAGT .............................. CCGTTACAAA ========== ====== ====== ====== ========== ============================== 66 30 35 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.90,-0.60] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [143,248] Score: 0/0.18 # # Final direction: F [4.5,0 Confidence: HIGH] >NC_015571 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 604390 30 100.0 35 CTCATCCACA .............................. AATATGCCCGCGCTCGGGGTTAAAAAGGGAGCGAA 604455 30 100.0 37 AGGGAGCGAA .............................. GCCGTGGTTGCCGGCGGCGTAGTCCTTTGCGCCGATT 604522 30 100.0 34 TGCGCCGATT .............................. GATGTTCTTGATGTATTATTAATAGTATGTTCTA 604586 30 100.0 35 GTATGTTCTA .............................. CAAGTCTCAAGACAAGACGACAAAGAAATAGCTCA 604651 30 76.7 45 AAATAGCTCA .......................------- ATTAAAACAACATATCATCACTAATAAACAACAGTTCTATGAAGA 604726 30 100.0 36 TCTATGAAGA .............................. TCTTTGTCCTGAAATAAAAAGTAGTTTTCGCTACCG 604792 30 100.0 34 TTCGCTACCG .............................. AAAGTGATAATGATTCTGAACGACCAGCTTGTTC 604856 30 100.0 37 CAGCTTGTTC .............................. ACAATGAGCAATCAANTTCGACTATAAGATAAACGTC 604923 30 100.0 34 GATAAACGTC .............................. GCGAGGATGCGCGCGCATAGTAAGTAGCATTCCG 604987 30 100.0 36 TAGCATTCCG .............................. TACCGTGTAACCGGTAAGATCCTCGCCGGCGATCGT 605053 30 100.0 36 CGGCGATCGT .............................. CCGAAAAGCAGATCACCGCCGTGCTGCCCGCCCCCC 605119 30 100.0 37 CCCGCCCCCC .............................. TATCCATATTACGCTCGTACTCCTCGAACCAGTTATC 605186 30 100.0 36 ACCAGTTATC .............................. GATGAGTAGCCGGGTAGCTGTCATAGGGGGTACGCC 605252 30 100.0 37 GGGGTACGCC .............................. CCTTCGAGGCGCCTGCTTTGTCGTCTGCAGGCTGGAA 605319 30 100.0 CAGGCTGGAA .............................. GAGCGATGCAGGCTCGTTGGAAGAGGTCGGTATGCAA ========== ====== ====== ====== ========== ============================== 15 30 36 ATTTCAATTGCACCATACAGGAATTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.60,-0.90] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [218,32] Score: 0.18/0.18 # # Final direction: R [0.18,4.91 Confidence: HIGH] >NC_015572 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1530167 28 100.0 32 TGCGCGATCA ............................ AAACGCTGGAAGAAGCGCAGCGACCGCCGCAA 1530227 28 96.4 32 ACCGCCGCAA .................T.......... GAATTAACCCACCGAATCGGCGTTATAGGAAC 1530287 28 96.4 32 TTATAGGAAC .................T.......... GGAATACCAAGAGCAAGTAAAAGCTCTTGAAT 1530347 28 100.0 32 GCTCTTGAAT ............................ GCCGAGCATGTTCCAGGCCTCAATCACTAATG 1530407 28 100.0 ATCACTAATG ............................ AATCATGCGC ========== ====== ====== ====== ========== ============================ 5 28 32 GTCCGCCGCCGCACAGGCGGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-10.10,-9.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [4541,296] Score: 0.18/0.18 # # Final direction: F [0.92,0 Confidence: HIGH] >NC_015572 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1526146 28 100.0 32 TATACAATCA ............................ AGACGGCGATACCCAGCCCTCGCTGGTCAGCA 1526206 28 100.0 32 CTGGTCAGCA ............................ ATTCCCGGAGCGAGGCTCTGGTCTGTCCGGGC 1526266 28 100.0 32 CTGTCCGGGC ............................ GTCATTTTCCAGCGCTTCCAGTCCCTTCATAC 1526326 28 100.0 32 CCCTTCATAC ............................ TCGTCGTCGTTTAAATGCCCGTCATTTTCCAG 1526386 28 100.0 32 CATTTTCCAG ............................ TATGTTGCAACAGCGCCAAATCGGTGGCGAAC 1526446 28 100.0 32 GGTGGCGAAC ............................ AATACGCTGCCAGCTGCGCAAAAGATCGTCAA 1526506 28 100.0 32 AGATCGTCAA ............................ CAGCACGCTAGTTGGCGTCGCCTTAGGCTGCG 1526566 28 100.0 32 TTAGGCTGCG ............................ CTTAGCATCCATCAAAGTTTGCAAAGTATTTG 1526626 28 100.0 32 AAAGTATTTG ............................ GTGTCAATGCCGGGGGTTTCGTCCTGGTATCT 1526686 28 100.0 32 CCTGGTATCT ............................ CTGTTATCTTTTACATCCTTTTTGGTGCACTC 1526746 28 100.0 32 TGGTGCACTC ............................ TTAGCCGGTCGGCCAGCGCCGGAGCGCTTGCC 1526806 28 100.0 32 AGCGCTTGCC ............................ GTAATCTTTAATCAGTGACTCGGCGTCGCTGC 1526866 28 100.0 32 GCGTCGCTGC ............................ ACCCTACATCATGCGTTTTCGGTGTTCATTAA 1526926 28 100.0 32 TGTTCATTAA ............................ TGTCACGTACTGCGTTTCCGATAATCACGCTT 1526986 28 100.0 32 AATCACGCTT ............................ GGTGTACTGGTGCATGAAATGCCGCACTACAG 1527046 28 100.0 32 CGCACTACAG ............................ GGTCCCGTTGGCACAATCATAACTCTGACACT 1527106 28 100.0 32 CTCTGACACT ............................ GCAGATGCTCAACGGCAACAACGAGTTGTCTG 1527166 28 100.0 33 GAGTTGTCTG ............................ GTATTGCGCGACAATCTGCTCGACGGTCATCTC 1527227 28 100.0 32 CGGTCATCTC ............................ ACATGCCCGCTACGGCAACATCCATTGCTGCA 1527287 28 100.0 32 CATTGCTGCA ............................ ATCGAGCTACAGGAAAACACGGTCAGGCACGG 1527347 28 100.0 32 TCAGGCACGG ............................ ATCAAGCACGTGCTGCGTACCAAGCACGGGCT 1527407 28 100.0 32 AGCACGGGCT ............................ TCGCTACGTTGTTTTCTATTGGTTTGGTAGCC 1527467 28 100.0 32 TTTGGTAGCC ............................ TTCAGCTGGTCGTTCTCGGCCTTTTTGCGGTT 1527527 28 100.0 32 TTTTGCGGTT ............................ TCAACGATGACCAAATCATCATCCAGCCGGCG 1527587 28 100.0 32 CCAGCCGGCG ............................ AAACGCGCTATTTTTTCGCCGTGCTGCTCGAT 1527647 28 100.0 32 GCTGCTCGAT ............................ GTAACGCCAATTTTTGCACAGCGTTTTTATCC 1527707 28 100.0 32 GTTTTTATCC ............................ ATTGGGCCGAAATGCCAAAAGGGGTGTCGATA 1527767 28 100.0 32 GGTGTCGATA ............................ TCCTTGATTGCGTCGTCGTGTACTGTGCCGCC 1527827 28 100.0 32 CTGTGCCGCC ............................ AATCCGCGGGCGAGAACCAATACAACTTATTC 1527887 28 100.0 32 CAACTTATTC ............................ AATCCACGGCAATTAGCGAGATAGCCCCCGCC 1527947 28 100.0 32 AGCCCCCGCC ............................ GATACGCGACGAATTTAACGCCAAGTTGGTGG 1528007 28 100.0 32 AAGTTGGTGG ............................ GCCAGCGCCTGGCTAAAGTATTTATTGCTGAA 1528067 28 100.0 32 TATTGCTGAA ............................ CTGCGGTCGCCGCCGGCGCGACCGGTTAACCA 1528127 28 100.0 32 CGGTTAACCA ............................ TGCTTTGATAGGCGTATTAAACAGCATGTCGG 1528187 28 100.0 32 AGCATGTCGG ............................ GATTGCATGCGGCGGTGCCAAAAGGTGATGCG 1528247 28 100.0 32 AGGTGATGCG ............................ AACTAATCCCAGCGCCGTAATGCCCACCTAAA 1528307 28 100.0 32 CCCACCTAAA ............................ TGCCCCAGGAGTGCCGGTAATCAAGGTAATCA 1528367 28 100.0 32 AAGGTAATCA ............................ GGACACGATCCGGAACCCCAGGAGACCGGACT 1528427 28 100.0 32 AGACCGGACT ............................ AAAGGAACATCAGCCGGACACGATCCGGAACC 1528487 28 100.0 32 ATCCGGAACC ............................ ATCCTGATCCATCGTCGCAGTGTCCAGCTCGG 1528547 28 100.0 32 TCCAGCTCGG ............................ AGAAACAGTACGGCCAAGACACAGACAATAAA 1528607 28 100.0 31 AGACAATAAA ............................ AAAAAACATGAGGCGGCATAACGGTATTACC 1528666 28 100.0 32 CGGTATTACC ............................ CAACGTCGAACAAGCGGGCAACTGGATTAAAC 1528726 28 100.0 32 TGGATTAAAC ............................ TGTTAGTAACGGGGGCGACGGTCGCGCCCGCG 1528786 28 100.0 32 CGCGCCCGCG ............................ AGGTCAAACGAGTATTTATAGAAATTCATACC 1528846 28 100.0 32 AATTCATACC ............................ CAACGTCGAACAGGCTGGAAATTGGATTAAAC 1528906 28 100.0 32 TGGATTAAAC ............................ ATAGCCGAAGATGTTATAGAGATGCGACGACA 1528966 28 100.0 32 TGCGACGACA ............................ ATAAGTGGAGCAGCCAATAGAGTCGGGATACT 1529026 28 100.0 32 TCGGGATACT ............................ GCTACGTGGGCAGCGGGTCAGGTTAGCAGATT 1529086 28 100.0 32 TTAGCAGATT ............................ AGTACCATTGTTGAACAGATAAAAATCTGTTT 1529146 28 100.0 32 AAATCTGTTT ............................ CGCTGCCCACGTAGCGGTAAGAAAAGTTAGTT 1529206 28 100.0 32 AAAGTTAGTT ............................ GCTACAGAATCGGCGGCCGATAGCGTCAACAT 1529266 28 100.0 32 GCGTCAACAT ............................ GCTACAGAATCGGCGGCCGATAGCGTCAACAT 1529326 28 100.0 33 GCGTCAACAT ............................ AGACCAATTATGACGATTTGATGGGATTGGCAA 1529387 28 100.0 32 GGATTGGCAA ............................ GGGTGAAAGCTGTGCCCAAGCTGGTGCGGGCC 1529447 28 100.0 32 GGTGCGGGCC ............................ TAAATTCTTCGTCGCTTTGGCACGCCACGCAT 1529507 28 100.0 32 CGCCACGCAT ............................ CAGCCACTGTAGCCATGGCCGACGCATGGTTG 1529567 28 100.0 32 CGCATGGTTG ............................ AACGGCTTTGCCGGCTATGTCGATCTGGCCGC 1529627 28 100.0 32 ATCTGGCCGC ............................ GACGAAAAGTCGGTCGATGTGCCCGATTCCAG 1529687 28 100.0 32 CCGATTCCAG ............................ TTACGAATTCAAACCCAGGACCTACATTACCG 1529747 28 100.0 32 TACATTACCG ............................ CGTCAACGGTTGGGCCGCTTTTGCCTATGCGA 1529807 28 96.4 32 GCCTATGCGA .....T...................... AGACAGTGACGGAGCACCTAGTTTTATGGGCA 1529867 28 100.0 32 TTTATGGGCA ............................ TAAATACCTGGCTACCGTGGATGCAATGGTAT 1529927 28 100.0 32 GCAATGGTAT ............................ GGATACTGCGCATTGATGGCCGCGATTTTAGC 1529987 28 100.0 32 CGATTTTAGC ............................ AACTGATCGTGCACTACAAACACGCGGTGTAC 1530047 28 100.0 32 CGCGGTGTAC ............................ GCTGTCCAGATCAAACCAAAACCCATCATTGG 1530107 28 100.0 272 CCATCATTGG ............................ TTAATACAAAGCGCCATAGCCATGCGCGATCAGTCCGCCGCCGCACAGGCGGCTTAGAAAAAACGCTGGAAGAAGCGCAGCGACCGCCGCAAGTCCGCCGCCGCACAGGTGGCTTAGAAAGAATTAACCCACCGAATCGGCGTTATAGGAACGTCCGCCGCCGCACAGGTGGCTTAGAAAGGAATACCAAGAGCAAGTAAAAGCTCTTGAATGTCCGCCGCCGCACAGGCGGCTTAGAAAGCCGAGCATGTTCCAGGCCTCAATCACTAATG 1530407 28 100.0 ATCACTAATG ............................ AATCATGCGC ========== ====== ====== ====== ========== ============================ 68 28 35 GTCCGCCGCCGCACAGGCGGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-10.10,-9.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [56.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [520,296] Score: 0/0.18 # # Final direction: F [1.42,0 Confidence: HIGH] >NC_015572 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 3370177 32 100.0 32 CCTTAACGCT ................................ GGTTCCCTGGCTATTAGCCCACCCCAAAAAAC 3370241 32 100.0 32 CCCAAAAAAC ................................ CATCTGCCCGACCTGTTTTACCAAGCCAACGG 3370305 32 100.0 34 AAGCCAACGG ................................ CGGTTGAGTTATCCACTCTGATTACATAGGGCTG 3370371 32 100.0 32 CATAGGGCTG ................................ ATAATGGCGACGAACACCTGATCAAAGCCTTT 3370435 32 100.0 33 CAAAGCCTTT ................................ GATTTCCGTTGCACGCTCGGTGGCCGTGGCGGT 3370500 32 100.0 32 CCGTGGCGGT ................................ TTGCTCATGCGTGATCGGGCATCAGGGCTAAA 3370564 32 100.0 32 CAGGGCTAAA ................................ ATGCGCTGCAGCTCCGGCTCGCGGGCTTGCGG 3370628 32 100.0 33 GGGCTTGCGG ................................ AACAACTATTGATCGCCATTTGTTGCTTAGGCG 3370693 32 100.0 32 TGCTTAGGCG ................................ CACCATGGCTAAGTTACCGGAGGTATCCGATG 3370757 32 100.0 32 GTATCCGATG ................................ TGTACACATCTACCCAAGACGCAAAGATTTAA 3370821 32 100.0 33 AAAGATTTAA ................................ TATGATGGGCGAATCATCTAGCATTTTTTGCGC 3370886 32 100.0 33 TTTTTTGCGC ................................ AACTAACCTGCAGTCTCAACCGATCATGGCGGC 3370951 32 100.0 33 TCATGGCGGC ................................ TCACGTGTTCTTAGGGAAACTGGTATCGATCTG 3371016 32 100.0 33 TATCGATCTG ................................ GTATATGTGACCAGCATCGAAAGCAATTCCGCG 3371081 32 100.0 32 CAATTCCGCG ................................ AATTTGAGATCGCAGTGATGCCTCGCCAAGTC 3371145 32 100.0 TCGCCAAGTC ................................ TTTTAGGACC ========== ====== ====== ====== ========== ================================ 16 32 32 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-10.30,-11.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [179,36] Score: 0.18/0.18 # # Final direction: F [5.05,0.37 Confidence: HIGH] >NC_015572 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 3372471 32 100.0 33 AGTTTAATAT ................................ CAGCATCGGTAGGAGTCCAATCACCTAGATTGG 3372536 32 100.0 34 CCTAGATTGG ................................ ATTCAGGCTGTCTGTTGAAACGGTTGAATTGCTG 3372602 32 100.0 33 TGAATTGCTG ................................ GACCCGATGCAATGATTATGCAACACGCGTCCT 3372667 32 100.0 32 CACGCGTCCT ................................ AATGATGCCATTGAGAATGCAATCAAATTGAT 3372731 32 100.0 35 TCAAATTGAT ................................ TAGCAGATCAATTCCTTTCTGTACGGCCTTTTCAA 3372798 32 100.0 34 GCCTTTTCAA ................................ AGCTACAACGCGGCCACCAAAACCGCCCGCATGA 3372864 32 100.0 33 GCCCGCATGA ................................ CGGCTAGAATGGGATTAGCCATAAAAGCCGTGC 3372929 32 100.0 33 AAAGCCGTGC ................................ TCCAACGGGTCTAGTCGACCAACGCTGCCTGTA 3372994 32 100.0 33 GCTGCCTGTA ................................ AATCGCAAGCTCGATACACTCTTTTGTCGACTT 3373059 32 100.0 33 TTGTCGACTT ................................ CTATTTTATGCGGCGGACTCGGCCGAGGTACCC 3373124 32 100.0 34 CGAGGTACCC ................................ GGCCTGGAAACGGCCATTAACAAACTAATCGAGG 3373190 32 100.0 CTAATCGAGG ................................ TGGCATGCAA ========== ====== ====== ====== ========== ================================ 12 32 33 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-10.30,-11.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [66.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [341,154] Score: 0.18/0.18 # # Final direction: F [5.32,0.37 Confidence: HIGH] >NC_015572 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 3375068 32 100.0 33 CGCAGTGCAT ................................ GCGCCTTTGGCCCGAATAGAAGCGATTAATTGC 3375133 32 100.0 32 GATTAATTGC ................................ ACGCGAAAGCGTGAAGGGGGCCGCCCATGTTT 3375197 32 100.0 33 GCCCATGTTT ................................ CGATGAAACCGTTATCCGCTGTCCTGGTTGGTT 3375262 32 100.0 33 CTGGTTGGTT ................................ ACCATTCGGCTTTTTAACTGTAACCGTATGCTG 3375327 32 100.0 33 CCGTATGCTG ................................ GTTGGTAAGAACTATAGCAGGATTTTGAAAAAA 3375392 32 100.0 TTTGAAAAAA ................................ TGTTGCGCAG ========== ====== ====== ====== ========== ================================ 6 32 32 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-10.30,-11.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [116,842] Score: 0.18/0.18 # # Final direction: F [4.87,0.55 Confidence: HIGH] >NC_015573 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2990697 37 97.3 37 CGGGGCTTGT .................................T... TTTGCGGGCTAAATATGGATGATGTAGATCTTAACTT 2990771 37 94.6 37 ATCTTAACTT ..........................GT......... TGTTACGCAACTCCTGGGGTTCTGGCTGGGGTATCGA 2990845 37 100.0 37 GGGGTATCGA ..................................... TTCCTGGCCTCCCCCGTCCGGTCAGTCCAAGCGGCGT 2990919 37 100.0 40 CAAGCGGCGT ..................................... TCAACTTCGTCTTGGCTGCGTTTGACGCCCAAATTTTTGC 2990996 37 100.0 37 AAATTTTTGC ..................................... TTGCCGTCATTTTTAAATTCCTCCTTCCCACGCCGGT 2991070 37 100.0 40 CCACGCCGGT ..................................... TCAACTTCGTCTTGGCTGCGTTTGACGCCCAAATTTTTGC 2991147 37 100.0 36 AAATTTTTGC ..................................... TTCTACTCTTTGAAATTTTCTACCAGAGGTTAATAT 2991220 37 100.0 38 AGGTTAATAT ..................................... AATCCAAAGACATGATAGCCAGTCAATGTTGTTTGATA 2991295 37 100.0 36 TTGTTTGATA ..................................... TTCTACTCTTTGAAATTTTCTACCAGAGGTTAATAT 2991368 37 100.0 41 AGGTTAATAT ..................................... CCCTCGTGGCCGCACCCTTCGAAGTACCTGGCCGCCTGTTC 2991446 37 100.0 37 CCGCCTGTTC ..................................... CGATACTGACTACATCGGCTCTCCTGCTGGCCGTACA 2991520 37 100.0 35 TGGCCGTACA ..................................... CTTCTTTTAAAACCAGAAGAAGTGGCCGATATTTT 2991592 37 100.0 38 CCGATATTTT ..................................... TTGGAAGCAAAGCTAACAAACTCATTATCTATCTCAAA 2991667 37 100.0 35 CTATCTCAAA ..................................... TCCCCTGCTCCGCAACTGTCAGGACTGTCCTCTTC 2991739 37 100.0 36 TGTCCTCTTC ..................................... CGGATTCGGCCCGGGCTACGGCCCGCAGCAGTGATG 2991812 37 100.0 36 AGCAGTGATG ..................................... ATGACGTGGAGCGGGTACGACCTGGTGGAGACGAGA 2991885 37 100.0 36 GGAGACGAGA ..................................... CGATGTCCGCCGGAGTGAGTGCATCGCTACCTCCAG 2991958 37 100.0 37 CTACCTCCAG ..................................... TAATGTGTACGAAGGTTGGGCTCAAAATTATGTAACG 2992032 37 100.0 39 TTATGTAACG ..................................... TTGTTCGGCCCGTTCAGCATCCATCAGGTGCAGGATATT 2992108 37 100.0 36 GCAGGATATT ..................................... AGGCGTTCCGTGTTGCTGAACGCCCCGATATGGTCC 2992181 37 100.0 35 GATATGGTCC ..................................... AAGGATCGAGTTCAGGAGCAGGGCGGGACAACAAT 2992253 37 100.0 36 GGACAACAAT ..................................... GCCTTCTCCTTACAGAAAATTTGAAGTCAAATAGGG 2992326 37 100.0 35 TCAAATAGGG ..................................... GCAGAAGGTACTCTTCTAAGTTTGCCGTAAAGGCA 2992398 37 100.0 35 CGTAAAGGCA ..................................... CTTACTTGCGCATCGCCTGACGACGATGCGCGTGC 2992470 37 100.0 37 ATGCGCGTGC ..................................... TCTAATGAGTCGGCAGCAAGGTAAAGGGTGCTCTCCC 2992544 37 100.0 35 GTGCTCTCCC ..................................... GGCCTGGGGCATATGTTCCGGTGCCGGTGCTGGTG 2992616 37 100.0 38 GGTGCTGGTG ..................................... TGTGGAGAAGGATTTTCCGGTTGCTCTTCGCCCCCTGG 2992691 37 100.0 36 CGCCCCCTGG ..................................... GCGGCCCGATTTAGACCCGCACATGCGCGTCAGGTT 2992764 37 100.0 36 GCGTCAGGTT ..................................... TACTGCAGCGGCACCCGTTAAGAAGCACGCCTACGG 2992837 37 100.0 39 ACGCCTACGG ..................................... GTTCCACCATCCCGAAGCCGTAGGCCCTCTTTTTACCCA 2992913 37 100.0 36 TTTTTACCCA ..................................... CCGCCCAGGGCGAGCAGATGAGCGATTGGATCACCC 2992986 37 100.0 38 TGGATCACCC ..................................... CGAGAACCTGATCTTCGTGGAGGACCCCGCCGAATCGA 2993061 37 100.0 39 GCCGAATCGA ..................................... GATGAGTTTCATCTTTAACGGTATAAGCAGCGACAGCTT 2993137 37 100.0 35 GCGACAGCTT ..................................... TCACCTGTACGCCGGCCCCCGGCTCCCAGCCAGGG 2993209 37 100.0 35 CCAGCCAGGG ..................................... GCAGAAGGTACTCTTCTAAGTTTGCCGTAAAGGCA 2993281 37 100.0 35 CGTAAAGGCA ..................................... CTTACTTGCGCATCGCCTGACGACGATGCGCGTGC 2993353 37 100.0 38 ATGCGCGTGC ..................................... TACCCCCGCAATACTGCGAGGGTGTCTCTGGTGTTTAT 2993428 37 100.0 37 TGGTGTTTAT ..................................... GGAGCACAGTACGGGTGAATCGAACTTGACAATTTCC 2993502 37 100.0 36 GACAATTTCC ..................................... TCATCCGCTACCAGGACCAGATCCTTGACCGTCTGG 2993575 37 100.0 37 GACCGTCTGG ..................................... GTGGTTCGTACGAAAAACGGTCAGGAAAATACCGGCA 2993649 37 100.0 35 AATACCGGCA ..................................... CGTGGCCGAGGGGCCGGTTGATGAGTCTTCGGAGG 2993721 37 100.0 36 TCTTCGGAGG ..................................... CGCACGATGCCCGGCATGGCCGTGATGTCGCTTTCA 2993794 37 100.0 40 GTCGCTTTCA ..................................... CTGTAGATGTACACATAATGGCCGTGGAACCCGGCACAAG 2993871 37 100.0 35 CCGGCACAAG ..................................... CGGGAGGAGGTTTTTAAACTCCCTGCCGCGTTGCC 2993943 37 100.0 37 CCGCGTTGCC ..................................... TGGCTTGGATGAGGAAGATGACGATAGTCTGCGTGCC 2994017 37 100.0 36 TCTGCGTGCC ..................................... CTCGCGCGGCTGAAAGCGGGTTTTGTCATAGATAGC 2994090 37 100.0 38 CATAGATAGC ..................................... GAAGCACCAGCTTGCTGGGCTGGTGCACGCATTCGACT 2994165 37 100.0 39 GCATTCGACT ..................................... TCCGGCGTGACCGCCCGGGTGTTTGGTCAGTTCTTAACA 2994241 37 100.0 36 GTTCTTAACA ..................................... TTGAGTGTTCGTGTGACACCGTGACACCTATTTTGA 2994314 37 100.0 40 CCTATTTTGA ..................................... GACGAAGGGATAGAGTTTCTAAGGCGGCACGGGGTGAGGG 2994391 37 100.0 36 GGGGTGAGGG ..................................... CTGGAGTAGGTCACTTCTGGTTTGGCGACATCCGCA 2994464 37 100.0 40 GACATCCGCA ..................................... GGATACAAGCCCCAGTCACTGCAAATCAACACCCGGGGAG 2994541 37 100.0 39 ACCCGGGGAG ..................................... GGCGGCACTCGTCCTTGGCCACCGCGTAGGTGTCCCGGA 2994617 37 100.0 36 GTGTCCCGGA ..................................... CTTGCGGACTGCTTGACCAGGCCCGCCAGCCTTTCA 2994690 37 100.0 39 CAGCCTTTCA ..................................... GCCGGTGAGTGGGTCTGGGCCGCAAGTGTGGCGCAGTAC 2994766 37 100.0 39 GGCGCAGTAC ..................................... TAGGCAGTCTGGATGTTGGTGCGGAAGATGTTGTCCAGA 2994842 37 100.0 35 GTTGTCCAGA ..................................... TGAGAAACAATGGTTGGGGTTGATTAATGAGCGCA 2994914 37 100.0 AATGAGCGCA ..................................... CGACCGCGAG ========== ====== ====== ====== ========== ===================================== 58 37 36 CTTTCAGTCCCCTTTTCGTCGGGTCAACGGGTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,11] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [290,392] Score: 0/0.18 # # Final direction: R [0.27,1.15 Confidence: MEDIUM] >NC_015573 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2972594 37 100.0 36 GCCTTTATGC ..................................... CATCCAGGGGGCCGGAGGGGTTCGGTGGCGTCTCCG 2972667 37 100.0 37 GGCGTCTCCG ..................................... TGGCGCTGATTTCGTACACATGATCACCTCCTTCCAA 2972741 37 100.0 37 CTCCTTCCAA ..................................... GGGTAACGCCGTAGTACCCCAGGTGGCCGAGGTAATT 2972815 37 100.0 38 CGAGGTAATT ..................................... TGAAAGGTAAGGCGTTGCAGGCGAGGTGTGTTCCTTGT 2972890 37 100.0 37 TGTTCCTTGT ..................................... CCTGGGCGCGGGAGGCAGTGGGCAGGGCTTATGCCGC 2972964 37 100.0 36 CTTATGCCGC ..................................... CCCGACAAAATTTAATTCGTTTACAGGGGCCTTTAG 2973037 37 100.0 35 GGGCCTTTAG ..................................... TGAAGAGAGAAAATCTTTGGGGCCGGGCCGGAACC 2973109 37 100.0 36 GGCCGGAACC ..................................... AAAAAAGCAAATTCTTCTTCCGAAAGGTTCTCTTCA 2973182 37 100.0 36 GTTCTCTTCA ..................................... TTCCAGGGTGTTGTTCGGCCTATACCTACCCACACA 2973255 37 100.0 35 TACCCACACA ..................................... TCGCAGTTGCAGGGGATCCACGGTAGGGCATAAAT 2973327 37 100.0 36 GGGCATAAAT ..................................... CTATAATGCATCATTCGCACCATCTTTTACTGCTGG 2973400 37 100.0 36 TTACTGCTGG ..................................... CGGCGGAGCAAAGTTTCGCGCCGGCAGTGTTCAGCA 2973473 37 100.0 36 GTGTTCAGCA ..................................... AGAAGGTGACTTAACATCTTCCTCATCTGCATTTGT 2973546 37 100.0 36 CTGCATTTGT ..................................... GGAGACACCTCTACAGTGTAGGTAGTGTCCGGTGTA 2973619 37 100.0 38 GTCCGGTGTA ..................................... GGTGCAGCTGGTCATTGCGGCCCTGGATCCGCTTTTCG 2973694 37 100.0 39 CCGCTTTTCG ..................................... TCGGCCAATGCCCTGGCGTAAAACAGGTGCTGGCTGGCC 2973770 37 100.0 36 CTGGCTGGCC ..................................... TTTCTGTAGCAGTTCTTTTCTTGCTTCAACTATTGT 2973843 37 100.0 35 CAACTATTGT ..................................... AAAGGCGGGCGCTTCAGGTGGAAGGACGGGAGGAA 2973915 37 100.0 37 ACGGGAGGAA ..................................... TTTCCACCGGTTTCCTGCGGCGGTCTTCAGGTTGGAG 2973989 37 100.0 39 CAGGTTGGAG ..................................... CCAAACGATGCCGGCAGCAGCAGCGATGCGCATAAGAGC 2974065 37 100.0 37 GCATAAGAGC ..................................... GCATTCATGGCCGTAGCCGAGGCAGCCACCGCATTCA 2974139 37 100.0 38 ACCGCATTCA ..................................... TCAGCCAACCCCCGTATATCGCATTGAAAAACTTTATA 2974214 37 100.0 38 AAACTTTATA ..................................... AAGGACAGGCGAAGTAATCACCCGCGCCTGGTCCTTCC 2974289 37 100.0 40 TGGTCCTTCC ..................................... AAATCATCAGCGAGTTAAACTTTGCCGCATTGAAGTCCCG 2974366 37 100.0 37 TGAAGTCCCG ..................................... GTTCAGGTTGAGGAGTGGCCCCGGGGGAGTAGTCCGG 2974440 37 100.0 35 AGTAGTCCGG ..................................... CAAAACTGGATTGGGCCAATCTCAAAAAGAAAATC 2974512 37 100.0 37 AAAGAAAATC ..................................... CTCGGCGGCATCGGCCTGCTGCTCGGGGCTGGACTGC 2974586 37 100.0 38 GCTGGACTGC ..................................... TACCGTTGTAGTTGTCCTTATCGCGCCCCCGGCTGGTC 2974661 37 100.0 37 CCGGCTGGTC ..................................... ATTTCCCGTTCACTAGCCACTATCCCGCAATCCGCGC 2974735 37 100.0 38 CAATCCGCGC ..................................... CAGGGAAGCGGATCCCTTTATCCCCTGGCACTGGAGGT 2974810 37 100.0 40 CACTGGAGGT ..................................... GAAGAAGAGTGCCGGTTAACGGCCATGCCGGAACGGTGAT 2974887 37 100.0 35 GAACGGTGAT ..................................... TTATAACGACCCATCGGCGCTTATAAAAATTGGCT 2974959 37 100.0 35 AAAATTGGCT ..................................... CACCATACCACCCCCTTCGCCAACCACAACCATAC 2975031 37 100.0 36 ACAACCATAC ..................................... TCACCCCGGTGCTCGTACAGGTGCGCTATCAGCATT 2975104 37 100.0 39 TATCAGCATT ..................................... CCGGGCGGTGGACGCAGGGACGCTGCCTCACAAACGGAT 2975180 37 100.0 38 ACAAACGGAT ..................................... GAATGTCCGGGGCGAAAGCGGAGTTGTTGGTGGAAGTG 2975255 37 100.0 35 GGTGGAAGTG ..................................... GCCAGCAAGCGCGTGGCGGACAAGCTGCTGAAACA 2975327 37 100.0 39 TGCTGAAACA ..................................... GGTGACCGCCCGGCAGCCGGAACGTTTTCGCTGGCCAAC 2975403 37 100.0 36 GCTGGCCAAC ..................................... AGCCTGCCCCCAACATCACACCCAAAATGGTGGACC 2975476 37 100.0 36 ATGGTGGACC ..................................... CTTTCCTGGCGAAACCGCCGGTAAGCGGGCTGTTGA 2975549 37 100.0 38 GGGCTGTTGA ..................................... CGACTTCGTGCTCCTTTCGGCGGATAAGGCTGAACTCT 2975624 37 100.0 36 GCTGAACTCT ..................................... AAGCTGCGCCTATGTGCCTGGCCAGGGCCGTCACGA 2975697 37 100.0 37 GCCGTCACGA ..................................... ACCTCACCCTCACTTTCGGGCGCAAAACTCCTTGCAC 2975771 37 100.0 37 CTCCTTGCAC ..................................... ACCGCCTGGAAAGAGAGAAGCCTTATGAGGCCATAAT 2975845 37 100.0 35 AGGCCATAAT ..................................... AAATATCGACCTGGCGCACGTAATACTGAAGTTGG 2975917 37 100.0 36 CTGAAGTTGG ..................................... GGAATAACAAGTACCGGGTGCCGCTAATTCTGCTGG 2975990 37 100.0 36 ATTCTGCTGG ..................................... GAGAAGAGGGGGCAAAGGCCGAGCGCGACAGGATCA 2976063 37 100.0 35 GACAGGATCA ..................................... TGAAGCGCTTGAGCCTGGCACGGGAAGCGCTGGGG 2976135 37 100.0 36 AGCGCTGGGG ..................................... GGAGCCAAGGGTCGGTTTCGCCGACTACTACTTCGC 2976208 37 100.0 ACTACTTCGC ..................................... CGACCGCGAT ========== ====== ====== ====== ========== ===================================== 50 37 36 CTTTCAGTCCCCTTTTCGTCGGGTCAGTGGGTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-4.60,-4.80] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [38.3-38.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [472,200] Score: 0.18/0.18 # # Final direction: R [0.18,0.37 Confidence: MEDIUM] >NC_015573 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 484645 30 100.0 36 GCCCAAACGG .............................. GCCTGCCGGACAACGTTGTACCGTACGAAGTCCAAC 484711 30 100.0 38 GAAGTCCAAC .............................. TGCCGTAGGGGGGGTTGGTAGTGGTGGTGTCTTCCTTG 484779 30 100.0 38 GTCTTCCTTG .............................. ACCAGGCCAGGGGCTACTGCACCGCCAAGGGCAAGGGC 484847 30 100.0 37 GGGCAAGGGC .............................. AAGGTCAAACGGGGGAGTTTTTCTCTGGCCCTCGCTG 484914 30 100.0 36 GCCCTCGCTG .............................. ACTGCACCGGCTGGGAAGCCGGGATTGTGGTGGAGA 484980 30 100.0 36 GTGGTGGAGA .............................. CTGGGTGGTACTACGGTAGTGAAAGGGTTCCGGACA 485046 30 100.0 35 GTTCCGGACA .............................. TGAGGATGGAACCGATCTCCTTGGTGTGGCCGACG 485111 30 100.0 38 GTGGCCGACG .............................. AAGCATCGGCTGTAAGAAGCACGATAACCCTTACAAAG 485179 30 100.0 38 CCTTACAAAG .............................. TCGATAACCATGCGCCCTATGCCGTGTTCCCGGAGTTT 485247 30 100.0 35 CCCGGAGTTT .............................. AGCGTGAAATTATGGAGATAACCGGTAAGTTAGTT 485312 30 100.0 37 TAAGTTAGTT .............................. TAAAACACGCCGCTATCTCCGATACCCGGAAACTCAA 485379 30 100.0 36 GGAAACTCAA .............................. CCAAACCGCCGGCCACGAATAACGGGTCCAGGGCCG 485445 30 100.0 39 TCCAGGGCCG .............................. TTCCAGCTCGGCAACTTGTCCAGTAGGTTCATTCTTCCC 485514 30 100.0 41 CATTCTTCCC .............................. TATGCTGAAGTAGTGGTTCCGTCACCAAGTTCACCATATAG 485585 30 100.0 37 CACCATATAG .............................. AAGTAGGCCGCCCACCGACGTTTCTTCCTCATCTCAG 485652 30 100.0 37 CTCATCTCAG .............................. CCAGCTCCAGCGACCGCCAGATTCCGGTCGTGGCTTC 485719 30 100.0 36 TCGTGGCTTC .............................. CGACGCAAAATGTCTGGAGGAATGTAAACATCCTCC 485785 30 100.0 39 AACATCCTCC .............................. ATGGCTTTCGGCCCCTGCAGTTCGGGCAGCCACTCTTCG 485854 30 100.0 37 CCACTCTTCG .............................. CCCTGAGCCCAGTGGCCTATGATGTCCTTGAACATGG 485921 30 100.0 38 TTGAACATGG .............................. CCGATGCCATCAGGGACAGCTTGAAAGCCCTGGGTGAG 485989 30 100.0 36 CCTGGGTGAG .............................. ACGGTGGCCGGTTTAAGGCCGCGCATCGCCAGCATG 486055 30 100.0 39 CGCCAGCATG .............................. TCACCACGTCCAGGGTAGGACTAACTCCCGCTACCGCCG 486124 30 100.0 38 GCTACCGCCG .............................. TCAGTTTGGCATCGTCCTCCTTGGCCAGGTAAAACACG 486192 30 100.0 36 GTAAAACACG .............................. CACCGTAGCAACACCCCCCGGGCACTGTTACGCAAG 486258 30 100.0 37 GTTACGCAAG .............................. GACGCCCGTGTTTTCAAGTCCGGCAGGGGCACAATTG 486325 30 100.0 36 GGCACAATTG .............................. CCGTCAAAACAGTTACATTTTACACATTGGAAAAAA 486391 30 100.0 36 TTGGAAAAAA .............................. ATGCCAGCTGCGCCCCCTGCTTACCCTGGGCTTTCG 486457 30 100.0 34 TGGGCTTTCG .............................. TAATAAATGATGTAATCCAGCTCCTGCCACGTAA 486521 30 100.0 35 TGCCACGTAA .............................. GCTTGACCCTTTCTTTTTCATCCATGTGATAAAAC 486586 30 100.0 36 GTGATAAAAC .............................. ATTGATTTGCTGCGTTTCTGGGGCATACCGCCGGCA 486652 30 100.0 ACCGCCGGCA .............................. GATATAATGA ========== ====== ====== ====== ========== ============================== 31 30 36 GTTTCCAGCCTACCTATGAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.80,-0.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [198,229] Score: 0/0.18 # # Final direction: F [4.87,0.27 Confidence: HIGH] >NC_015573 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 488791 31 100.0 40 ATAATCACGG ............................... TTTACGGCCTCGGCAAAGATCCGCAACTCGATCTCGTATC 488862 31 100.0 34 ATCTCGTATC ............................... CCGCCAGGAAACCCTCCTGCAATGGCTCTTCCCT 488927 31 96.8 GCTCTTCCCT G.............................. ACTGGCTATG ========== ====== ====== ====== ========== =============================== 3 31 37 CGTTTCCAGCCTACCTATGAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:51.61%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.80,-0.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [38.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [342,394] Score: 0/0.18 # # Final direction: F [5.28,0.27 Confidence: HIGH] >NC_015573 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 811112 30 100.0 36 GTTTGAATGG .............................. CCGTAAATCCTGTCAACGAAAAGCCTAAACCGATCA 811178 30 100.0 36 AAACCGATCA .............................. AAAAACGGCAAAAAGAAAGGAGTGACCGCCCATGGA 811244 30 100.0 36 CGCCCATGGA .............................. GATGACATCCTCATCGTTCTGCTGGATGTTCCGCTT 811310 30 100.0 36 TGTTCCGCTT .............................. GGTATCGGTTAAGCAAGGAAGATTTTTTTGAAATGG 811376 30 100.0 TTTGAAATGG .............................. ATGCCCGGTT ========== ====== ====== ====== ========== ============================== 5 30 36 GTTTGGTTGCTGCCTTTGAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.80,-0.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [50.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [108,2886] Score: 0.18/0.18 # # Final direction: F [5.14,0.18 Confidence: HIGH] >NC_015573 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 804796 30 100.0 36 ATTTAGACGT .............................. GGATAAAGGACGTGTGCCGCCGCGCTAAGGAATGCC 804862 30 100.0 36 AAGGAATGCC .............................. GATAAACTGCTCTTTCGCCCCGGCACGCGCCGATTC 804928 30 100.0 35 GCGCCGATTC .............................. CAACAGGGGCGCTTCCACGGATTTGCCCGGGACGA 804993 30 100.0 36 CCCGGGACGA .............................. CGGACGTTGGCCTGGCAGCCCTGGCGGTAGGGTCGG 805059 30 96.7 37 GTAGGGTCGG ...........T.................. GACGACCTGCCGCTTGCGCCGTGCCCGGAGTGGTTGC 805126 30 96.7 34 GAGTGGTTGC ...........T.................. TATGTACAACGGCGCGGGTGTATAATACAAACAT 805190 30 100.0 36 ATACAAACAT .............................. GCTCGGTAGGCTCCCGCTTTACCCTGCTGCGCCGCT 805256 30 96.7 36 CTGCGCCGCT ..C........................... CTGTCCAGGTAGACTTCTGCCTGCGCTGTCCCGGGC 805322 30 96.7 TGTCCCGGGC ..C........................... ACGCCGTAGA ========== ====== ====== ====== ========== ============================== 9 30 35 GTTTAGTTGCTACCTTTGAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [104,50] Score: 0.18/0.18 # # Final direction: F [5.32,0 Confidence: HIGH] >NC_015573 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 642189 29 100.0 36 TTCACCTGCT ............................. TTTACTCCACCTCCGGTAAGGGGAATACAGTGATCT 642254 29 100.0 38 ACAGTGATCT ............................. TCGAACAGCTGCTCGCGGCCGTCAAGCGTCCTGTCCGG 642321 29 100.0 36 TCCTGTCCGG ............................. CTTCCGTAAAGTCCCTGCCGAGCCAATCAATCAATC 642386 29 100.0 36 TCAATCAATC ............................. CTGTTTCCGATATATGCAGCCCCGCAAAGACCACAT 642451 29 100.0 37 AAGACCACAT ............................. TCGACTCCCCCTTTATCAGTGTTCGGGCATAGTTGCG 642517 29 100.0 35 CATAGTTGCG ............................. CTTGCCACCCTCAAGGTGGACGCACTGACCGAGGG 642581 29 100.0 36 TGACCGAGGG ............................. ATCGGTAGAAGCGGCAACCGCCGGGCTCATGGCGGC 642646 29 100.0 36 TCATGGCGGC ............................. GCCTATCCAACTGGTCCTGGACGGACGGGTGCTGGC 642711 29 100.0 37 GGGTGCTGGC ............................. GTACATTGTGCGGGGCTGGCTGGTGCGAAATGCGGCA 642777 29 100.0 38 AAATGCGGCA ............................. ACTTGATTAGTGCGTCATATCGCTTCTCGGCCGCCGTA 642844 29 100.0 36 GGCCGCCGTA ............................. ATTCCCTCGACTATGCCCCCCGAGCATATTTCCGCT 642909 29 100.0 38 TATTTCCGCT ............................. TCAGGATCATTCCAAAATCCCCGCATGGCCATCACCGC 642976 29 100.0 36 CCATCACCGC ............................. AGCGTAAGGGCGATGAGTTTGAGAGAGAGGTATGCC 643041 29 100.0 37 GAGGTATGCC ............................. TGTTTTTGCTTCGCGAAATTTCCATGGTGGCTACGGC 643107 29 100.0 37 TGGCTACGGC ............................. ATAATTACGAAGTCGTCCATGTACCGGACGTAGAACT 643173 29 100.0 34 ACGTAGAACT ............................. CTTTTACGATGTGCTCAATGTTGCTTAGCAGGTT 643236 29 100.0 38 TTAGCAGGTT ............................. CTAGAGGAAACACTCGCTGGGAGTGCCAAGGCTGCCAG 643303 29 100.0 34 AGGCTGCCAG ............................. AAGCACGGGTAAGCTTATAGAGGTCGCTGTCATC 643366 29 100.0 36 CGCTGTCATC ............................. GATAATTTCGATTTCCCGGGAGTGCCCCACAAAGGG 643431 29 100.0 38 CCACAAAGGG ............................. TACTGTCAAGAGGGAAATTAGATTTTTTATGGCCGATG 643498 29 100.0 36 ATGGCCGATG ............................. TTTTATTTTGTCCGCTTCTTTCATGCGGGCAATCTG 643563 29 100.0 36 GGGCAATCTG ............................. AGACGACACCGTTTTTGACGCCAACAGCTTTTTCTG 643628 29 100.0 36 GCTTTTTCTG ............................. TTCTACACCACCTTACCAACTTGGTAATTTTATTCT 643693 29 100.0 37 ATTTTATTCT ............................. GTTTATCCAGAGGCATAAGCCATCGCGCCGCCCACCT 643759 29 100.0 40 CCGCCCACCT ............................. TTGATTTTCAACAAGAAGCATTTGACGATATACGAACCGG 643828 29 100.0 36 TACGAACCGG ............................. GGGCACCATTGCGGCCCGGCGCGAGCAACCCGGCGA 643893 29 100.0 36 AACCCGGCGA ............................. GGCAACCAGGCCGGCAACCGGGCAGAAAAGGCCGGA 643958 29 96.6 37 AAAGGCCGGA .........A................... CTCCTTATTCCCTAAATAGATGCGCATGGCGTCCACC 644024 29 100.0 37 GGCGTCCACC ............................. CTGGACCAGAGGGAATTTAGGTGTGGTCCAGTAGTGG 644090 29 96.6 35 CCAGTAGTGG ..........T.................. GAAGGAATCTTTTCGCTTCCAGAGAAATTCCTTAA 644154 29 96.6 36 AATTCCTTAA ..........T.................. GGAGCTCAAGGCAGCCCTGCAAGCGGTGGAAGCCGG 644219 29 96.6 37 TGGAAGCCGG ..........T.................. TGCCTGGCGCAAGCTGGACTTGCTGGTATACGTCCCC 644285 29 96.6 35 ATACGTCCCC ..........T.................. TCATATAGAGCCTGGTCGTAAGGTCTTTTATTCTC 644349 29 96.6 36 TTTTATTCTC ..........T.................. CTATTTCCCGCATAGTGCCCGCAAAAGTAAGACCGG 644414 29 96.6 37 GTAAGACCGG ..........T.................. TAGTCTCTCTACTCCATACGGCCTGCCCAGCTGTATG 644480 29 100.0 35 CAGCTGTATG ............................. TCACCTTTGTTTCGGGTAGCAGACCCTTTCTTGAA 644544 29 96.6 CTTTCTTGAA ....................G........ TGCTTCGGCT ========== ====== ====== ====== ========== ============================= 37 29 36 GTTGCCATCGCCCATAGAGGAATCTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [46.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [87,187] Score: 0.18/0.18 # # Final direction: F [1.05,0.55 Confidence: LOW] >NC_015573 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================= ====== 815813 17 94.1 62 CGGTTTGAAA ...........T..... GAGGGATTGAAACAGGGATTGAAACGGAGTTTGGATAGTCTCCTTTATTAGTACTGCACTGG 815892 17 100.0 49 ACTGCACTGG ................. GAGGGATTGAAACACGCACAGAATAAAGCAGAACAGGCAGATGCTATAA 815958 17 94.1 50 GATGCTATAA .........T....... GAGGGATTGAAACTTCCAGTAGTAAACGTGCGGCTCCAACCCCTTTTGTC 816025 17 94.1 49 CCCTTTTGTC ........A........ GAGGGATTGAAACGCGCTTTTGGATGGTTATCCGTGTAAACCGCCCGGC 816091 17 100.0 46 ACCGCCCGGC ................. GAGGGATTGAATGACCTGATTGCCGCAGGCGACAGGGATGTGAAAG 816154 17 100.0 50 GATGTGAAAG ................. AAGGGATTGAAACTTTTTCATCCTTGGTTGATATATACCATCATGGAATT 816221 17 100.0 50 TCATGGAATT ................. AAAGGATTGAAACCATACACGTTTGGCTACTTTACGGGCGTTAGCAAAGC 816288 17 100.0 49 TTAGCAAAGC ................. AGGGGATTAAAACTTGTTACAGTACGTGCGGGCGGCAGGTCTGATCGAC 816354 17 100.0 49 TCTGATCGAC ................. AGGGGATTGAAACGGAAGCTGGAAGACTGGCTTTTAAATTTCCCGGATG 816420 17 100.0 TTCCCGGATG ................. AGGGGATTGAA ========== ====== ====== ====== ========== ================= 10 17 50 GTTTAGTTGCTACCTTT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.71%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [181,122] Score: 0/0.18 # # Final direction: R [0,0.41 Confidence: MEDIUM] >NC_015573 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 816955 30 90.0 35 CTCTGGTCGC .................G..........TA CAGGGTGGCTCTTTGGTACCTCTTGCGAAATTTCC 817020 30 96.7 36 CGAAATTTCC ........A..................... ACGCGGGTACGGCGATGAAACGATCCGGGAAATGGA 817086 30 100.0 35 GGGAAATGGA .............................. AACGGAGGCCCTGGCGCACAGGGCGCAACGCAGGC 817151 30 100.0 36 CAACGCAGGC .............................. AGGCCAACGGGATGCGGGACCCGATCAAGGTGTTGC 817217 30 100.0 36 AAGGTGTTGC .............................. TTCCTCCTGGTTTGGCTGGTTCTGGTCTAGCTGGTC 817283 30 100.0 36 CTAGCTGGTC .............................. TTCCTCCTGGTTTGGCTGGTTCTGGTCTAGCTGGTC 817349 30 100.0 35 CTAGCTGGTC .............................. CCGGAAGTACCGGGCATCCTGGATTTGCCAGGCAG 817414 30 96.7 TGCCAGGCAG .................G............ TCGAATAACC ========== ====== ====== ====== ========== ============================== 8 30 35 GTTTAGTTGCTACCTTTAAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [53.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [107,46] Score: 0.18/0.18 # # Final direction: F [5.32,0.41 Confidence: HIGH] >NC_015573 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 816557 30 93.3 36 GCCGGGCTTC .....A.....G.................. GCAGGCTCTGCACGAACACAACCTCAGCTCCCTGGG 816623 30 96.7 36 GCTCCCTGGG ...........G.................. ACGTCTACCACCGCCGCGTAGCCCCTGCCCTTCAGC 816689 30 100.0 35 GCCCTTCAGC .............................. TATCTTTGAGCGCCAAATCCGTTTAACCGCCTCGG 816754 30 96.7 36 ACCGCCTCGG .........T.................... CACAAAATCCCTCCCTAAAATTTTTCTGCGCTCAAA 816820 30 100.0 TGCGCTCAAA .............................. TGGGTGTAAGT ========== ====== ====== ====== ========== ============================== 5 30 35 GTTTAGTTGCTTCCTTTGAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.40,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [122,107] Score: 0/0.18 # # Final direction: F [4.87,0.68 Confidence: HIGH] >NC_015574 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1531117 30 100.0 37 AATATTTAAA .............................. TTGTGTGATCTGATTCTATGAATAGTTTATCAGTCAC 1531184 30 100.0 36 TATCAGTCAC .............................. TGGTATAAGACATAAATTAGATGCATTTATAAATAT 1531250 30 100.0 37 TTATAAATAT .............................. AACACCTGCATACAGCAATATCAATTTAATTTTATAT 1531317 30 100.0 37 AATTTTATAT .............................. CTTTTAGGAACTGGAGATGGGTTCATAGAAGTAGCCA 1531384 30 100.0 37 GAAGTAGCCA .............................. TTACCACCCTTAACGGATGGCGTGATTGATGGTGCAT 1531451 30 100.0 37 GATGGTGCAT .............................. GCATTTGTGGACATCCAGATATTACGGTGTGGATGCT 1531518 30 100.0 36 TGTGGATGCT .............................. AGGTTTCAAACCTCTTTCTTCATATTCAAGAGCCTT 1531584 30 100.0 37 CAAGAGCCTT .............................. AGTTCATAATTTACATCTGTACCAAATTTACTTTCTT 1531651 30 100.0 36 TTACTTTCTT .............................. TCATGATCATGGTGTGTTACCTGATAGTGTTGCAAT 1531717 30 100.0 36 GTGTTGCAAT .............................. TAACTCTTTATGGTTATCCATGTTTAACTTATACCA 1531783 30 100.0 36 ACTTATACCA .............................. TCCTTTTCTTCCATACACATCTATATCTCCAATCTT 1531849 30 100.0 36 CTCCAATCTT .............................. TCAAAATGAAAATGGATCGAGATGCTTAGTAGGAAT 1531915 30 100.0 37 TAGTAGGAAT .............................. AATTTTGGATTCATACTCCCCTACTCCAAAAGTCAAA 1531982 30 100.0 38 AAAAGTCAAA .............................. TACACTTATACGGGAACGATAAATTCTAGTATAACTAG 1532050 30 100.0 37 GTATAACTAG .............................. TTAAAACGTTGAAAGACTGCTTCCAAACCGATGAGTA 1532117 30 100.0 36 CCGATGAGTA .............................. TGAAAGGGAAATTAGTAAACAGATAGACAAATTAGA 1532183 30 100.0 36 ACAAATTAGA .............................. CCGCCATGGGACATGATTGGACACCCTACCCCCTCA 1532249 30 100.0 36 TACCCCCTCA .............................. TTTTTTACCATTCCCCTTTAATTCTTCTTTTTCTTC 1532315 30 100.0 36 CTTTTTCTTC .............................. CAAAATCTATATAAGCTATGCTACCTAAGATCAACA 1532381 30 100.0 35 AAGATCAACA .............................. AAAGTTACAACGCTCTTAACGGGTGACGTGCTGTG 1532446 30 100.0 36 ACGTGCTGTG .............................. CGCTTTCAAAGTAGGAACGCTCCTTTTAGGTGAAAG 1532512 30 100.0 36 TAGGTGAAAG .............................. ACCTCTTGATGATGAGGAATTAGAGTTTGTAGGCTC 1532578 30 100.0 37 TTGTAGGCTC .............................. TGCGAGCAGTAAGTGTAGTTGAAACGGAACTGAAAAG 1532645 30 100.0 36 AACTGAAAAG .............................. AACCATTGTTCTGAAGAATATATTAAAAAATAAGGA 1532711 30 100.0 36 AAAATAAGGA .............................. TCCAACATACACATCTTGGAATGAACTCATCTGTGT 1532777 30 100.0 36 TCATCTGTGT .............................. TAATCTTGCATGACGCGACCTCCGTGGTTGTTGTCA 1532843 30 100.0 36 GTTGTTGTCA .............................. CCTTGTAATAGTAGCAAACAGCAACACCAAAATTGT 1532909 30 100.0 35 CCAAAATTGT .............................. CCGCCTTCAAGTTCTTTTAAGATGATATTATTGCT 1532974 30 100.0 36 TATTATTGCT .............................. ATTACCTAATTCTAATGTTCAATGCAATGATGCAGA 1533040 30 100.0 36 ATGATGCAGA .............................. GATGGATGTTTTAGGGCAGATCAATTAATTAGATTA 1533106 30 100.0 36 AATTAGATTA .............................. GACTTCTACAACACTTATACGGTTGAAAGCTCCAGC 1533172 30 100.0 36 AAGCTCCAGC .............................. GAATCAAAATATGAAACGGGCTCATTTATGACCAAA 1533238 30 100.0 36 TATGACCAAA .............................. GATGCCAGCATTGCAGATGAAACCCAACATCAGCGA 1533304 30 100.0 37 ACATCAGCGA .............................. CAGGTGTTGTCTCATATATGATCCCTGTTCCGAAGGA 1533371 30 100.0 36 TTCCGAAGGA .............................. ACATTTAAGTTGAGGCCTTGAGGGTCGATTTTATCA 1533437 30 100.0 37 GATTTTATCA .............................. TTTAACATTCCCTATGACCAGTAATGAGGTTCAGGAT 1533504 30 100.0 37 GGTTCAGGAT .............................. CAAGAGCAGTAAATCCAATCTTAATACATTCCTCAAT 1533571 30 100.0 37 ATTCCTCAAT .............................. ACATCTAATAGAAGCAGTTGCTTCTGTATATTCTCTA 1533638 30 100.0 36 ATATTCTCTA .............................. TTGATACTTCAGTTCACTTAGAAACCTTGCTTTTTC 1533704 30 100.0 37 TTGCTTTTTC .............................. ATGACAGGAAATGCCAACAAATAGAGTCGAATCTGGC 1533771 30 100.0 36 CGAATCTGGC .............................. AAATCAAAGTTATCCATTTTAAGCTCAGTTATGTTG 1533837 30 100.0 37 AGTTATGTTG .............................. ATTTTATCAAGTAAGACCTCATGACCTTCCTCACTTC 1533904 30 100.0 36 TCCTCACTTC .............................. AACAGATAACCAAACAACTGATAATAATTCAACTGA 1533970 30 100.0 35 ATTCAACTGA .............................. AAAAAAAAAGTTAGAAGTGTAAAATTCTACACTTC 1534035 30 100.0 36 TCTACACTTC .............................. CTTAATATCGGTTGGTGTTTCCTTGTAATAACAATT 1534101 30 100.0 36 AATAACAATT .............................. TCACGCGGTCTTTTTGCTTATGTTTATAAGTAAAAA 1534167 30 100.0 36 TAAGTAAAAA .............................. TCTTTATATGCGTCTAAATATATTAGGATTGAAAGA 1534233 30 100.0 36 GATTGAAAGA .............................. ATAATCATCATTATCCCAAACAAACACATGAATGAA 1534299 30 100.0 37 CATGAATGAA .............................. ATGGTCATATACTTGTGCAACTGCATCAATCGCATTT 1534366 30 100.0 36 AATCGCATTT .............................. TCAAAAATAGGACGTTTATCATTCCCAAGTATAAGT 1534432 30 100.0 36 AAGTATAAGT .............................. TCTTTATATGCGTCTAAATATATTAGGATTGAAAGA 1534498 30 100.0 36 GATTGAAAGA .............................. ATAATCATCATTATCCCAAACAAACACATGAATGAA 1534564 30 100.0 36 CATGAATGAA .............................. CCATTGTATCACCTCTTTTTCAGGACATACAACCCA 1534630 30 100.0 36 ATACAACCCA .............................. GTTCTAATCCATAAATAAAAGCCTATCATAGAGTGT 1534696 30 100.0 36 CATAGAGTGT .............................. TATGTTAGCCCATGTTCCTCTGAGCAATACTTTTTC 1534762 30 100.0 37 ATACTTTTTC .............................. TTAAATAATAAATGAACAATAAAACAATGTTTAAAAG 1534829 30 100.0 36 TGTTTAAAAG .............................. TATCCTTAATTGCTTTGGAACTAAGGTCGTATACTA 1534895 30 100.0 36 TCGTATACTA .............................. AGTAGACTGTTTCAAAGTCATAGGGCGGTCACTCTT 1534961 30 100.0 37 GGTCACTCTT .............................. ATAAATTTCTCCAACTTCATAATATGTCATATTATAT 1535028 30 100.0 37 CATATTATAT .............................. TAACAATAAATAGTAAATATGTAAGTGCAATAGCTAA 1535095 30 100.0 36 CAATAGCTAA .............................. GGTTAAACAAGCTGAAAAAATAATTAATTTAATGAA 1535161 30 100.0 36 ATTTAATGAA .............................. TCATAAAGACCATTTCTATAAATACTCATATAAACT 1535227 30 100.0 37 CATATAAACT .............................. CCAATTTGCAGCGTTTGAAGCCCTCATGGTTTCGGTG 1535294 30 100.0 36 GGTTTCGGTG .............................. AAGATACAACACATTTAAAATCAATGATAAAAAAAC 1535360 30 100.0 37 ATAAAAAAAC .............................. CTCATTTCTTTTTCAATGTTTCTTCTAATTCATCAAA 1535427 30 100.0 36 ATTCATCAAA .............................. TGTAAATGGTGTTGTATCCGAACTTGTATCAACTGA 1535493 30 100.0 36 TATCAACTGA .............................. ACATGTCATGGTCTAATGTAGCCCACCCGCCACATT 1535559 30 100.0 37 CCGCCACATT .............................. TGCAAGTTCTTGTTCCGTTCTTGCAACCTCATCAAGG 1535626 30 100.0 35 CTCATCAAGG .............................. GGAACATGGACTTTTAGGTGGAATGTGGTTGCAAA 1535691 30 100.0 36 TGGTTGCAAA .............................. ATTGAAAAACTCGATGGAAAAAAGGTTATTCCTTGT 1535757 30 100.0 36 TATTCCTTGT .............................. TTGAAAGTCCACTGGCAGATGAACCCCGAAAATTTG 1535823 30 100.0 35 CGAAAATTTG .............................. TTAAGTTATGGAGATGACTACACGGAAGATTTGGC 1535888 30 100.0 36 AAGATTTGGC .............................. TTGTTTCTCTGTTGCATCTGATAAGCTTGTTACGAT 1535954 30 100.0 37 TTGTTACGAT .............................. TTTAATCCTTCTAAAGATTATTATGAGGGCAAATTAA 1536021 30 100.0 36 GGCAAATTAA .............................. TAACAGATCAGGATCCTACTTTTGCAGAAAATACAT 1536087 30 100.0 36 GAAAATACAT .............................. GTTGAACATGAAATCAAAGAACAGCTAAAAATGCGT 1536153 30 100.0 36 AAAAATGCGT .............................. TGAAAGATTGAAGATACCAGAAACAATTACAGTTGC 1536219 30 100.0 35 TTACAGTTGC .............................. AAATCTTTAGCGTTGATTGTAGCTGTTTGATCAAC 1536284 30 100.0 36 TTTGATCAAC .............................. AAAAAACCAGCTAAAAGAAGAACTCCAAAAGAAATC 1536350 30 100.0 AAAAGAAATC .............................. AGGGCCGAAA ========== ====== ====== ====== ========== ============================== 80 30 36 ATTTCAATCCTAAAATAGTCTGATTCTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:73.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [86.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [397,354] Score: 0/0.18 # # Final direction: R [0.27,4.5 Confidence: HIGH] >NC_015574 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 51972 19 94.7 62 CAATGTTAGT ...........T....... ATGGTGGTACTATTAGTTCTTTAAGTGGTTGTACGTTCGCTAATAACACTGCAAAGGCTTCT 52053 19 89.5 56 AAAGGCTTCT A.................G CCGGTACTATCACATCTTTAATTGCTTGTACTTTCACAGGCAACAATGCGACTCAA 52128 19 100.0 59 TGCGACTCAA ................... ATAAGGGGAATAATATTACGTGGAGTGGCTGCACTTTAACAGGTAACACAGCAACTTAT 52206 19 100.0 56 AGCAACTTAT ................... TGGGTAACATGAATGTGGGTGGCTGTACTTTCACAGGCAACAATGCAACTAACATG 52281 19 94.7 AACTAACATG ...........T....... ATGGAGGGACC ========== ====== ====== ====== ========== =================== 5 19 58 GGTGGTGCTATCTACAATA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:57.89%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [3162,2403] Score: 0/0.18 # # Final direction: R [0,0.41 Confidence: MEDIUM] >NC_015577 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 3383326 35 100.0 38 NNNNNNNNNN ................................... ACGGAGGGTTCCAGTATTTGCAACCTCGGACCGCTCAA 3383399 35 100.0 37 NNNNNNNNNN ................................... CCAACAGAAAGACGGAGGTATGGGTATCTACGTTATG 3383471 35 100.0 37 NNNNNNNNNN ................................... GTTATCCTGCCCAGGTGCCAGCTACCTGCGGATACCA 3383543 35 100.0 38 NNNNNNNNNN ................................... GCTTTTGGATTCGGCCTCTTCGACAACGGGTTCAGCAG 3383616 35 100.0 37 NNNNNNNNNN ................................... ACTACTACGCGGTCTCGGCCTCTTCAGATTCAGCTAC 3383688 35 100.0 37 NNNNNNNNNN ................................... TCGGAACTTGTTAAAAGTTCAACCTTTTTTCCTAATT 3383760 35 100.0 36 NNNNNNNNNN ................................... CAGTTTTTGTTTGATCATCGATCGGATATGGATCGA 3383831 35 100.0 38 NNNNNNNNNN ................................... TCGATATCAGAGTTTACAATGGGTTTTCTTATAAATGA 3383904 35 100.0 39 NNNNNNNNNN ................................... CATGTTATCAATCTGTTCTTTAGCTTCAGGATAGTTCTC 3383978 35 100.0 38 NNNNNNNNNN ................................... TGATGGTCCCACACATGTATCCGCACCTTATTCCTAAC 3384051 35 100.0 36 NNNNNNNNNN ................................... TCGCCACCTTTCGAGAACATCATCATCTGTAACATT 3384122 35 100.0 38 NNNNNNNNNN ................................... ACTTTAACTCCACCTATCAACTTTAATTTCCCTCTAGT 3384195 35 100.0 36 NNNNNNNNNN ................................... AGATTCCTCTGATATTTTGGGTGAACATTGAGTTTT 3384266 35 100.0 36 NNNNNNNNNN ................................... TCAACGGGTGGCAGAGTTTCGGGCGGCTCCGACAGT 3384337 35 100.0 37 NNNNNNNNNN ................................... CTCGATACAACCCAAGCGATCATCTTTTCGTGCAGAA 3384409 35 100.0 36 NNNNNNNNNN ................................... AGCATCTTCCGCCAATCGATACCTGCCCATACACCA 3384480 35 100.0 41 NNNNNNNNNN ................................... TAGCGGCATCTTTTTCGGCCCTCGCAGCCAATCTGCGGATG 3384556 35 100.0 39 NNNNNNNNNN ................................... GACTTCTACATCCAGCTCTTCAGGTTTGAATGTACGAGT 3384630 35 100.0 1 NNNNNNNNNN ...............................T.CT NNNNNNNNNN ========== ====== ====== ====== ========== =================================== 19 35 37 GTCTGAACAAATGACCTGATTAAAGGGATTAAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.90,-0.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [60.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [299,89] Score: 0.18/0.18 # # Final direction: F [0.96,0.27 Confidence: MEDIUM] >NC_015578 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================ ====== 1395991 16 100.0 68 CCAGCAGCGA ................ GTGGACGGCGGGACCTTCACCATGGGCGTGGGAGGGGAAACTATCACCGGCAACACCGCCTACAAGGG 1396075 16 100.0 62 CCTACAAGGG ................ GTGACCGGCGATAAGACCTTCACCATGAACGGGGGAACCATCACCGTCAACAACGGCTCCGA 1396153 16 100.0 56 ACGGCTCCGA ................ GCGAGTACGGACTTCGCCATGAACGGGGGAATTATCACCGCCAACGATGGCGTCAG 1396225 16 93.8 56 ATGGCGTCAG .........A...... ACGAGCAAGAGCTTCACCTTGAATACGGGAGCCATCACCGGCAACAACGGCTTCGA 1396297 16 93.8 62 ACGGCTTCGA .....C.......... GTGAACGCCGGGGACTTCAACATAAAAGGGGGAACCATCAACCGCAATAGAGCAGACAACAA 1396375 16 100.0 62 CAGACAACAA ................ ATGAGCGGAGGGAACTCCGAAATGAGATTGGGAGAAATCCGCGACAATACCTGCAACAACGA 1396453 16 93.8 65 GCAACAACGA ..............T. ATTAGTTACGGTGCACGCTTCAGCATGGTCACTGGAACCTTCAACCGCAATAGAGCAGGCAACGA 1396534 16 100.0 CAGGCAACGA ................ GTGGCCGGCGT ========== ====== ====== ====== ========== ================ 8 16 61 CGGCGGCGGGGTGTAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [36.7-35.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [2788,326] Score: 0.18/0.18 # # Final direction: F [0.59,0.37 Confidence: LOW] >NC_015589 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1100410 30 100.0 36 AAAAAGACGT .............................. TTCTCTCCAGTTCGTCTTTATCTCTGCCTGTGACCA 1100476 30 100.0 38 CCTGTGACCA .............................. CTGCTGATATTCATCGTCTCTGGCGCAGAACATACTGG 1100544 30 100.0 36 AACATACTGG .............................. AGTGAATTTATAACACTTTGGACTATTTACAAACAA 1100610 30 100.0 38 TTACAAACAA .............................. ACGGGCAATACAGGCTTCACAGACTGGGTGTTTATAGA 1100678 30 100.0 36 TGTTTATAGA .............................. GTCTATAGTAAACCAAACTCCTGTTTATTTATCTTT 1100744 30 100.0 34 ATTTATCTTT .............................. TTAGCCATTGGCGGCATTCCTCCTTAATATCCCG 1100808 30 100.0 37 TAATATCCCG .............................. TGGTGCCAAGTAGAGTTAGGACAATTGGTGCACAGTT 1100875 30 100.0 35 GTGCACAGTT .............................. CAACGAATTCGGCCATCTCCTCGCGGCTGTCCTTG 1100940 30 100.0 36 GCTGTCCTTG .............................. GGGTGTTCTCTCCAACCAAAGCCAGAAGATACCCAA 1101006 30 100.0 34 AGATACCCAA .............................. CCAAACCTTTATTTTGCCTTCATCGTCTATTTCA 1101070 30 100.0 39 GTCTATTTCA .............................. TATCTGAGGCCTTGAATAACCTAAGTTTCCCATAGGATA 1101139 30 100.0 36 CCATAGGATA .............................. AACAATTCGCCAGGCAAGAACCATTTTAGAGATTGC 1101205 30 100.0 39 TAGAGATTGC .............................. CAAGGGCTATTTTCCCTCTTTTTCCAAAAACAATTCATG 1101274 30 100.0 35 ACAATTCATG .............................. GGCCGAGGGATTTGGCCCGGAAAACGGATATATCT 1101339 30 100.0 34 GGATATATCT .............................. GTATGTGTTGCCGTTATCCTCATGAATTTGAGCA 1101403 30 100.0 36 AATTTGAGCA .............................. AGTTTGTATACGTAACGGACGACGAATTCGACAAAA 1101469 30 100.0 37 TTCGACAAAA .............................. GATAAAGTTGAATTTTTGAAATCGATATCATTCCAAG 1101536 30 100.0 39 TCATTCCAAG .............................. TATTTTATGGAACAGCGAAACAGAGACGGTTACGCTACG 1101605 30 100.0 36 TTACGCTACG .............................. AACTCTAGCAGATACCGCCAAGACCCAGCAACAAAT 1101671 30 100.0 39 AGCAACAAAT .............................. TTCTCATGAAAGCAAAAAATAAAGAAGAGATTGACCATA 1101740 30 100.0 38 ATTGACCATA .............................. GAACTGGCTTCCCAAAAAGCTGTAACTGAAGCAATTGA 1101808 30 100.0 39 AAGCAATTGA .............................. GAAAGATGGGTCACATCAAGTACCGATCCCCCGGTGTAG 1101877 30 100.0 37 CCCGGTGTAG .............................. CTAAGCGCTCACCTAACTGTTTTCTGCGTATATTGTA 1101944 30 100.0 36 GTATATTGTA .............................. ACACAAGGCTTTGATTTTGGTATACTAATATCAAGA 1102010 30 100.0 37 AATATCAAGA .............................. TAACACATAATTATGCGATACGCAAATATAATAATTA 1102077 30 100.0 39 ATAATAATTA .............................. TCGGATATGACATCTGTAAAGACGAAAAGGATTATGAGG 1102146 30 100.0 40 GATTATGAGG .............................. CAAGGTATCTACAGATTGGATTATCCACGGAAACAAACTT 1102216 30 100.0 38 AAACAAACTT .............................. TTACTCCAACTCCTGTAAATACTACTGCAGAGAGGAGG 1102284 30 100.0 40 AGAGAGGAGG .............................. TAGTTCATGTTCTGTGTTTTTTGCTGCTGCTAGCATAGAG 1102354 30 100.0 38 TAGCATAGAG .............................. CGAACAATATTACAATAGATGCCAAACCATATATTAAA 1102422 30 100.0 ATATATTAAA .............................. ATACGCACATTCCTGAGCGTATTAAAAATAATGTCGAA ========== ====== ====== ====== ========== ============================== 31 30 37 GTTTCAAATCCTTATAGGTAGGCTAGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.70,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [210,202] Score: 0/0.18 # # Final direction: F [0.37,0.27 Confidence: LOW] >NC_015589 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1421835 32 100.0 36 ACTTTTTGCT ................................ CCATAAACTGTACGGCTGACGGATAATCCTAAGCCA 1421903 32 100.0 35 TCCTAAGCCA ................................ AATCAATCAAAGCGAGTTTCTGAGGAGAAAAATAA 1421970 32 100.0 35 AGAAAAATAA ................................ ATCTACTCCCTTGGCAGCTAATTCGGCAATGTTCT 1422037 32 100.0 35 GCAATGTTCT ................................ GGTTCCCATCCCAGGGCCGTGTATACGTCCCTAAA 1422104 32 100.0 34 CGTCCCTAAA ................................ CAAAAATCTACTGGCTGCCTCAACCGCCAAAGCT 1422170 32 100.0 37 CGCCAAAGCT ................................ ATTTTATGAGGCCGTGATTGAGCCTATTGCTATCCAA 1422239 32 100.0 35 TGCTATCCAA ................................ GCAGGATGACCAGTGCAGCGAAAAGGCCATGCTTG 1422306 32 100.0 33 GCCATGCTTG ................................ ACTGAGTGAAAAAGTCGATAAAATTTCCCTTTC 1422371 32 100.0 34 TTTCCCTTTC ................................ ATTTACAACCAAGTACTTAATGCCTATCTGGTTA 1422437 32 100.0 35 TATCTGGTTA ................................ ATAATAGGTATATTTTACCCTAATTAATCTGGAAA 1422504 32 100.0 34 AATCTGGAAA ................................ ATTCTTCAGGTAATCATCCATTTTCCGTTTCAAC 1422570 32 100.0 34 CCGTTTCAAC ................................ CTGAAGCCATTTGGATATACTGCAAAAGGATACC 1422636 32 100.0 34 AAAGGATACC ................................ CTCCTCGTACCAGCGCGTCCAAAGCGAACTTTGG 1422702 32 100.0 33 CGAACTTTGG ................................ CTTAAGGCTGAGGCGGGTCATTGACTGGCCTCC 1422767 32 100.0 ACTGGCCTCC ................................ TCCCTGGCTG ========== ====== ====== ====== ========== ================================ 15 32 34 GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [7,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.70,-2.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [71.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [868,997] Score: 0/0.18 # # Final direction: F [5.14,0.37 Confidence: HIGH] >NC_015578 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3225105 37 100.0 34 CGTGTAAACA ..................................... CACAAAAACTAGACAAGCGTGTCAGATTGCACAA 3225176 37 100.0 36 GATTGCACAA ..................................... TGAAGGCACCGTTGAACATAACAACGTGGGGTTCAA 3225249 37 100.0 35 TGGGGTTCAA ..................................... AAGTATAACCATTCAACGTTGACGGATATCATGAA 3225321 37 100.0 35 ATATCATGAA ..................................... CCATAAAAATGTAAAATATATATTATCACGTAAAC 3225393 37 100.0 36 TCACGTAAAC ..................................... TGGCCGAAAAATTACCAGTAAAAAAGGCTTACTTAA 3225466 37 100.0 GCTTACTTAA ..................................... ACACCCCCAT ========== ====== ====== ====== ========== ===================================== 6 37 35 GTCGCAATCCCTTTTAATTCAGGTCATTGGTTAAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.80,-2.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [65.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [172,511] Score: 0.18/0.18 # # Final direction: R [0.27,0.55 Confidence: MEDIUM] >NC_015589 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1143068 30 100.0 36 CGTTACCAAT .............................. GTAATTGCTCGTTTAGATCAAAGATTAGCAGCATTA 1143134 30 100.0 38 AGCAGCATTA .............................. TCCCCTCCCAGATCACCTTCGCTTCGCCTTGTGCCCAC 1143202 30 100.0 39 TTGTGCCCAC .............................. TGGAACCACTAAAACCATGGATGTTTCTCCTGAAATAAG 1143271 30 100.0 39 CTGAAATAAG .............................. GAGCAATATCCAGGCATGACGGTCACGTTTAAAATTCAA 1143340 30 100.0 TAAAATTCAA .............................. CCGTCCCGAT ========== ====== ====== ====== ========== ============================== 5 30 38 GTTTCAAATCCTTATAGGTAGGCTAGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.70,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [487,249] Score: 0/0.18 # # Final direction: F [0.64,0 Confidence: HIGH] >NC_015589 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1426177 32 100.0 36 GCATGGCATC ................................ AAATTTTCACCCCCTTTGTTTCGTGAGGAAATATCT 1426245 32 100.0 34 GGAAATATCT ................................ TTAGAACGGGGAGGAGATATTGATACCATTTTAG 1426311 32 100.0 34 ACCATTTTAG ................................ CGAAACAAAAATATGCTGCTGCCGGTATGGCTGC 1426377 32 100.0 36 GTATGGCTGC ................................ TTTTACTGGTACTCCTGTTCAGTCTGTTCCTTATGT 1426445 32 100.0 34 TTCCTTATGT ................................ TGTCTTTGCGGCTTCCAGTTGGTTAACTCGCTCA 1426511 32 100.0 34 AACTCGCTCA ................................ CAGCGTAGCATCCAGTATTCAAGAGAAAGTATCT 1426577 32 100.0 33 GAAAGTATCT ................................ ACCTAACATATATCGTTACATCTATCCTCATGT 1426642 32 100.0 36 ATCCTCATGT ................................ CATTTTTGCGTTTACGTATTTCGAGATCGTACCAGG 1426710 32 100.0 36 TCGTACCAGG ................................ TTATTTGCTTATTTTATCAACCTTTATGATTATATT 1426778 32 100.0 36 TGATTATATT ................................ TGCCATGGACGCAGAACGGTATAACCAGAAAGATAC 1426846 32 100.0 37 AGAAAGATAC ................................ CTGCAACAACACCGCTACCGGAATGATACCCTGCCTG 1426915 32 100.0 36 ACCCTGCCTG ................................ GTAAATGCTGGAGATGATCCCACTTATCAACCTCAC 1426983 32 100.0 34 TCAACCTCAC ................................ ATATAAAGAGGTCACGAGTGGGCTTCTAGGTAGT 1427049 32 100.0 35 TCTAGGTAGT ................................ CTAACATTGTTGGAGTAGATATTGGTTGTGGAATG 1427116 32 100.0 TTGTGGAATG ................................ ATAATAGATA ========== ====== ====== ====== ========== ================================ 15 32 35 GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [7,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.70,-2.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [46.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2130,35] Score: 0.18/0.18 # # Final direction: F [5.05,0.64 Confidence: HIGH] >NC_015589 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1422900 32 100.0 34 TCTGGCTATA ................................ TCCGGTTGGAAACAGAAGCCACTAGGCAGACGAC 1422966 32 100.0 34 GGCAGACGAC ................................ ACTGGCCATTGCCGCAAGCTCCGGCTCAGTTAGC 1423032 32 100.0 34 CTCAGTTAGC ................................ ATCCGGACGCGGATTGCTTCAATTGCCACAATAA 1423098 32 100.0 34 GCCACAATAA ................................ AATTACCCTCACCCCCTTGCTCAAGTTTCTTTTG 1423164 32 100.0 34 GTTTCTTTTG ................................ TACAGCCCCATTATGCCACCGCTAATCGGTGCAC 1423230 32 100.0 34 ATCGGTGCAC ................................ GTCAGTTTCATTATTATTTGACTCGTTAGTATCT 1423296 32 100.0 34 GTTAGTATCT ................................ ATAGCTCTCAACTGTTGTTTTGTCAAGTGCAACT 1423362 32 100.0 34 AAGTGCAACT ................................ ATCTAAGGCATAAAGCCTTCGCCGGGTTATATCA 1423428 32 100.0 34 GGTTATATCA ................................ CCATCCATAATGGGTTACACCATAATAAGCGTCA 1423494 32 100.0 ATAAGCGTCA ................................ TCCAGTGCCT ========== ====== ====== ====== ========== ================================ 10 32 34 GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [7,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.70,-2.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1933,270] Score: 0.18/0.18 # # Final direction: F [5.05,0.37 Confidence: HIGH] >NC_015589 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1800074 30 100.0 36 CTTCCGACGG .............................. GGGGGGTTAATGCCGATTATGACGAGAGCCAACCGG 1800140 30 100.0 37 AGCCAACCGG .............................. CTAACAGACAGGCCAAGACAAAAACTATCGTTCGCAG 1800207 30 100.0 38 TCGTTCGCAG .............................. TATCTAGCGCACTGTATAAGGTCAACACTGCTGCTTTA 1800275 30 100.0 37 TGCTGCTTTA .............................. CCTTTACAGATGCAGCTAGCGAGTGGAAAGTAACCCT 1800342 30 100.0 36 AAGTAACCCT .............................. AATTTAATAGCTTCCTTAATATATCAACTTGATTAG 1800408 30 100.0 35 ACTTGATTAG .............................. AATTCTGCGATTTCATGGGCCAGACTGCCCTCTGC 1800473 30 100.0 36 TGCCCTCTGC .............................. TAGATATTTCGGTAAGTGTTTCATCTGTAGCATCGA 1800539 30 100.0 36 GTAGCATCGA .............................. CTGCTGTAGCTGCTCCCCTTGCAGGTATCATAGCGA 1800605 30 100.0 40 ATCATAGCGA .............................. TTGAAATATTCGGACACCGCTTCGATCAAAGGAAGGGCCA 1800675 30 100.0 35 GGAAGGGCCA .............................. TATTTTAATTATTAATATAATTAGTTAAATATTTT 1800740 30 100.0 39 TAAATATTTT .............................. TTCTTTGAGATATGACTGGATAAATCTGTAATCAACAAC 1800809 30 100.0 39 AATCAACAAC .............................. CTCTTCGGTGTAAATTGTTGGCGTATAATCATCTGGACT 1800878 30 100.0 35 CATCTGGACT .............................. TGTCTTCTTCCTCTTCTTTAATGATGGCATTCAGC 1800943 30 100.0 39 GGCATTCAGC .............................. ACTGCTTGCTCCATGATGTATTCCTTAAGCCTTTTAGTT 1801012 30 100.0 36 CCTTTTAGTT .............................. CGGCGATGGCTCCAAGTGGCAGCAAATCTATAATGC 1801078 30 100.0 36 TCTATAATGC .............................. CAAAAAAGCACCGTGAAAAAGCTGATTGAGACCATA 1801144 30 100.0 38 TGAGACCATA .............................. TTGGAAAGAGAAAATAATCGTGGTATAGCAGGAATTTG 1801212 30 100.0 37 CAGGAATTTG .............................. ATATAGTTAGTGTATCCATCAATGGTGGTTTGAGCTA 1801279 30 100.0 35 GTTTGAGCTA .............................. GGTCTATGCTTCTCACAATACCCGCCGCCTCGAAC 1801344 30 100.0 35 CGCCTCGAAC .............................. ATGTTTTAAAGAAGGAGGTTGAACATGGTGACTAA 1801409 30 100.0 35 TGGTGACTAA .............................. GAGACCCGGATCCCCTGCAATCGAAGGGCTTCCAG 1801474 30 100.0 40 GGGCTTCCAG .............................. ATCACATTGCATGTATGGAGGTAAAACAAAATGGCTGAAA 1801544 30 100.0 39 ATGGCTGAAA .............................. TCGTAGGCATTGCCGCCTCGCGGTTCCTGGCGTAGACTG 1801613 30 100.0 37 GCGTAGACTG .............................. CCGGCACACTCCACACATGGTTAGGATTATCGATCAA 1801680 30 100.0 34 TATCGATCAA .............................. TACCCCTCCTGTCGCCGGTTTCGTAACAGCAGCA 1801744 30 100.0 36 AACAGCAGCA .............................. CTGCTATTGTATAACGGTTATTAGTGATTGTCAACA 1801810 30 100.0 40 ATTGTCAACA .............................. ATAGTATGCGTCGCGAAGATTTGGTTGGGGAATGGTATTT 1801880 30 100.0 34 AATGGTATTT .............................. ATATCTTCAAACCGTTCATCCATTTGTTTCGCAG 1801944 30 100.0 36 TGTTTCGCAG .............................. CTCACCGACGCATTGGCCCACTGATCCGTGGCATCA 1802010 30 100.0 35 CGTGGCATCA .............................. CAGGCTTGGTGACCTACTTGTTGGTGCTTGAACGA 1802075 30 100.0 37 GCTTGAACGA .............................. TATATCGCATTGAGTACGGCGGAAAACTCCTTGGTAT 1802142 30 100.0 38 TCCTTGGTAT .............................. TCAGATGGAGTTGTGAAAAGAACAGCTTAAATGTATAG 1802210 30 100.0 35 AAATGTATAG .............................. TCGCGGAGAGAGCCTTTTTGGGGGTTCGTAATCAC 1802275 30 100.0 35 TCGTAATCAC .............................. TTTTATCCGACTGGCGGGTTCCGGGCAGTCAGTCC 1802340 30 100.0 37 CAGTCAGTCC .............................. ATCTTCGCGGTCTCCTCTTTTACCGCCCGTCCGTTGA 1802407 30 100.0 37 CGTCCGTTGA .............................. CAGAGCAACCTTACCAGTATCGATGTTCGACCCCACT 1802474 30 100.0 37 CGACCCCACT .............................. TTTGTACATTCATTTTAAAACCTCCTCTGATCTTTTC 1802541 30 100.0 37 TGATCTTTTC .............................. TTGACATCCGCCGGCCAGGGAACTTGGTCACTGGTCC 1802608 30 100.0 37 TCACTGGTCC .............................. ACTTGGTCTTCATTCCATTTAAAAACAAGTATCCCGT 1802675 30 100.0 36 AGTATCCCGT .............................. TTCATACATTTCTTTGTATCACCTCGCTCACTGCAA 1802741 30 100.0 34 CTCACTGCAA .............................. CAAAAAGCAAAGTTGCTGTTATTGATTGTTTTAA 1802805 30 100.0 36 ATTGTTTTAA .............................. TACTTTGCCCCCGCCGCCTTAAAGTGAGTCAGCAGG 1802871 30 100.0 39 AGTCAGCAGG .............................. TTACTTTCGTTATGAATTTTTTCATGATTCACCATCTTT 1802940 30 100.0 39 CACCATCTTT .............................. CCATTTACTCACCTCCATGGCTGTGTTTCGTCATAACCC 1803009 30 100.0 37 GTCATAACCC .............................. TTGGCGCCACTTTCACATATTGGTGAGTCGATTGGCC 1803076 30 100.0 40 TCGATTGGCC .............................. GATATGACAATCCACAATAGTTACAGTTAACTCCTGGTCC 1803146 30 100.0 35 CTCCTGGTCC .............................. TGGGGTCGGGGTCTAAAGAACCTGTCATAAAAGCC 1803211 30 100.0 35 CATAAAAGCC .............................. ATACTACCAATGAACAAGCCGAATCGTTGGCCTAC 1803276 30 100.0 39 GTTGGCCTAC .............................. TCCTCGTTAAGCCGTTTATCGTCCAAGTCTATTTCATCA 1803345 30 100.0 34 TATTTCATCA .............................. CTCCCATTGCTCAGCGGAAAATATTAGACGCAGC 1803409 30 100.0 38 TAGACGCAGC .............................. AGATGAATCAAAAAGACCTGGGGAAAGCCTTCCAATCC 1803477 30 100.0 35 CTTCCAATCC .............................. TGGGAATGGGACGGTGATATAAGTGGCCAATACCA 1803542 30 100.0 39 GCCAATACCA .............................. TTGGCTTCTGTGCCGGCCTCCGTAGTTTTCGCGTTTAAG 1803611 30 100.0 CGCGTTTAAG .............................. TGATGGTCGCCCATCACGATTTGCATTACCCGCTCC ========== ====== ====== ====== ========== ============================== 54 30 36 GTTACTAGCCTACCTATAAGGATTTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.30,-1.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [676,114] Score: 0.18/0.18 # # Final direction: F [0.45,0.37 Confidence: LOW] >NC_015589 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1435556 32 100.0 36 ACTTTTTGCT ................................ TGCTAGGGCACCATTAGCAAAACTCTCCAGGTTTAC 1435624 32 100.0 34 CCAGGTTTAC ................................ CTTATTAAACCATGCGCAATCTATACGACAGTAA 1435690 32 100.0 35 ACGACAGTAA ................................ TATCAGCCCCCAAAAGGGCCAGATACCGGGGATGG 1435757 32 100.0 36 CCGGGGATGG ................................ TTCAATCCGCGCAGGAAGCCGGTATATCCATCTCCT 1435825 32 100.0 34 TCCATCTCCT ................................ ACTCTTTCCTCACAAACATCATCCCGAACGAATG 1435891 32 100.0 35 CGAACGAATG ................................ AGGCCAATCGTGTTTCAAATCCTTATAGGTAGGCT 1435958 32 100.0 36 TAGGTAGGCT ................................ TAGGAATGACACATAATTTACTGTTGCCTCTAGCCC 1436026 32 100.0 34 CCTCTAGCCC ................................ CCACTTGGCAGGGAGGCGGCACCGTAAAATGCAC 1436092 32 100.0 34 TAAAATGCAC ................................ AATGTCACCTCCGGATCATCAATATTCTGTGGCG 1436158 32 100.0 34 TTCTGTGGCG ................................ TTTATCATTGTCCAAATTTGGGCAAAAGTCATTG 1436224 32 100.0 37 AAAGTCATTG ................................ CCATATTTTTACATTTTATTGACTTCAGAGAAAATTT 1436293 32 100.0 36 GAGAAAATTT ................................ TGCTAGGGCACCATTAGCAAAACTCTCCAGGTTTAC 1436361 32 100.0 34 CCAGGTTTAC ................................ TCCAGGCGTCAAGAACCCTATTAAAGTTTGCACC 1436427 32 100.0 35 AGTTTGCACC ................................ GCCCCTGGATACGCTCCACGTATCGGCGGTACTAT 1436494 32 100.0 35 GCGGTACTAT ................................ CTGAACTACTACGGGCAGCATTGTTATATTGATCA 1436561 32 100.0 34 ATATTGATCA ................................ AATATCCATATGGTCACACTCTACCAACGAATAG 1436627 32 100.0 34 CAACGAATAG ................................ CGTGTCGAAATAAGAGCGATCATGAACAGGGCAA 1436693 32 100.0 34 AACAGGGCAA ................................ AGAGAGAAAGGACCGTTATTGGCGAAACAGGCCG 1436759 32 100.0 34 AAACAGGCCG ................................ ATCCATAAACCGGGTCGACTTCGGGGTCTTGTTG 1436825 32 100.0 34 GGTCTTGTTG ................................ CCTGATACCGACTACACCAAACACGTTCCGAAAA 1436891 32 100.0 36 GTTCCGAAAA ................................ GCTTCGCCACCATGCCCTCCAACCCCTGGACCTTGA 1436959 32 100.0 34 TGGACCTTGA ................................ TGAAGAACAGTCTACTATAGAAAAATTAAAAAGT 1437025 32 100.0 35 ATTAAAAAGT ................................ CAGGCAACTACTTGATGATGGGAAAGCGAAATACC 1437092 32 100.0 33 GCGAAATACC ................................ CATTGTTGTCATTTGCTTGTTTAGCTTTTTTAT 1437157 32 100.0 35 GCTTTTTTAT ................................ CATGTTCTTTTTTTGCACATTACATCACATCATGG 1437224 32 100.0 34 CACATCATGG ................................ CCTATCTGCTCAGGAGTATACGGCTTAACACCAC 1437290 32 100.0 34 TTAACACCAC ................................ CGTTATCTTCAGGCCAAAAAGTTAATGTGATTAA 1437356 32 100.0 34 ATGTGATTAA ................................ CCTATCTGCTCAGGAGTATACGGCTTAACACCAC 1437422 32 100.0 35 TTAACACCAC ................................ CGTGATATCCTGCAGACGCTCCACCCGGACGGCTG 1437489 32 100.0 36 CGGACGGCTG ................................ TTTGATCTCTTTTATCATTTCATGTTTGCCAGTAAC 1437557 32 100.0 36 TGCCAGTAAC ................................ TTGATATATTAATACTTGAGACTAAAATTCAAAGTA 1437625 32 100.0 35 ATTCAAAGTA ................................ CTATATACCATATCCTGAGCGTGATTGGAACGAAA 1437692 32 100.0 35 TGGAACGAAA ................................ CTCCTATTTATTCTGGAATTAGAATGTAGGTAAAA 1437759 32 100.0 35 GTAGGTAAAA ................................ TTGCACATATCAGAAGTAAATTTAGCGTGAGTCGA 1437826 32 100.0 35 CGTGAGTCGA ................................ CATACACCGAAATTACTCCTAAAGGCTCGTCCACC 1437893 32 100.0 33 CTCGTCCACC ................................ ACTGTATAGTTCAAGCGCTAAATTATCATCTTT 1437958 32 100.0 36 TATCATCTTT ................................ TTTCACTGTGGGATACTTTGTGTTCGCCCACACTGC 1438026 32 100.0 33 CCCACACTGC ................................ GTATTGAAAAGCTTTGGAGTTTATGTGCTATGG 1438091 32 100.0 33 TGTGCTATGG ................................ CTGACGAACTCCTGGCCATGATTGAAAACATTC 1438156 32 100.0 33 GAAAACATTC ................................ TTGCATATACGCTTTTATATCAGTCCAAATTGT 1438221 32 100.0 35 TCCAAATTGT ................................ TATTCAAACAGTAGATATAGAAAAATTAATTAAAA 1438288 32 96.9 35 TTAATTAAAA ..................A............. TGGATGAACCGCAAAGCTTTGCTGGTTAGGTATTC 1438355 32 100.0 35 TTAGGTATTC ................................ ATCTGATGGCCACCCCCACCATCTGTGTGATGACA 1438422 32 100.0 35 TGTGATGACA ................................ AGAGCAGATGCCGAACGGACGCCGCAATGGAAGGG 1438489 32 100.0 36 AATGGAAGGG ................................ AGGTCCAAACCACAATCTCTTATCCTTGTATCACGT 1438557 32 100.0 35 TGTATCACGT ................................ AGGAAATGAGAAACCGGAAGCGTAAACTGGTAGAC 1438624 32 100.0 34 ACTGGTAGAC ................................ CTAGAAGGCCGAGGTTTTAAGCACGTGGGAACTT 1438690 32 100.0 35 GTGGGAACTT ................................ TTTCAAAGAAAGATAGAAAAGATCTAACTATATTA 1438757 32 100.0 35 AACTATATTA ................................ CAGAGGAAAGCGCATGGAATTTCGTATTCCATAAA 1438824 32 100.0 34 ATTCCATAAA ................................ TCAAACCCCATGCTCATCCTTGGTGACGCTGTAC 1438890 32 100.0 35 GACGCTGTAC ................................ CCCGGTTAATGCCTTGGAAGAAAAAACGTGGTGCA 1438957 32 100.0 35 ACGTGGTGCA ................................ CCCGGTTAATGCCTTGGAAGAAAAAACGTGGTGCA 1439024 32 100.0 35 ACGTGGTGCA ................................ CCGTTCCAGATGATGCGCCAGTTGAAATACCAAGA 1439091 32 100.0 35 AATACCAAGA ................................ TTTTTGTACCATTAATAGTTCTAGAAGATTATAAA 1439158 32 100.0 34 AGATTATAAA ................................ TGGAATTTCAATCCGTGTCCTACTCATACACAAT 1439224 32 100.0 35 CATACACAAT ................................ TTAGGGAAAAAGGTTTTGCAGCGGCAGAGGTCAAT 1439291 32 100.0 34 AGAGGTCAAT ................................ TGTCCAGTTCGTGCCATACTCCTCGGGTTCCTAG 1439357 32 100.0 34 GGGTTCCTAG ................................ TTGAGGATAACCCATGACAGATGTTGCCATTTAC 1439423 32 100.0 TGCCATTTAC ................................ CGGTCAACAA ========== ====== ====== ====== ========== ================================ 59 32 34 GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [7,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.80,-3.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [81.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [170,341] Score: 0.18/0.18 # # Final direction: F [1.05,0.55 Confidence: LOW] >NC_015589 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2490237 30 100.0 37 ACTCCGACGG .............................. TGCCATTTCTGTATCCCTAGAGGTTGACACTATGGCG 2490304 30 100.0 36 CACTATGGCG .............................. AAGCGTCTATATGTCGTTCTCCAAAGTCTGAACTAT 2490370 30 100.0 37 TCTGAACTAT .............................. AGAGATTTTTCAATCTCTTCCTCTGGTTCAAAAACTT 2490437 30 100.0 36 TCAAAAACTT .............................. TACTTTTTTGCAATTTCCTTGATTTCTATTACCGAC 2490503 30 100.0 37 TATTACCGAC .............................. GGAATGATCCCTCGTTCAGGATTTCAGGTTTTAGTGA 2490570 30 100.0 38 GTTTTAGTGA .............................. CCACCTTCCAGTATAAATGATGTTTTTTATTTAAAAGA 2490638 30 100.0 35 ATTTAAAAGA .............................. CGCATACTGCGAGAAGAAAAGAATCTAACCCTTGA 2490703 30 100.0 38 TAACCCTTGA .............................. CCGCTCAGCAGGCACTGGAACATAAATTAATTGACGAG 2490771 30 100.0 36 AATTGACGAG .............................. TAAGCGCAAGAAAGACGGTAGCTATAGGCCTGTAGG 2490837 30 100.0 35 GGCCTGTAGG .............................. TTCCATTATCCCAATTAATATCATCCCATTTAAGA 2490902 30 100.0 36 CCATTTAAGA .............................. TCTCACCCCCTCCATTTTCTTGAACACCGCCCCACA 2490968 30 100.0 36 CCGCCCCACA .............................. ACCATTGGCTGATTTTGTCAATAACGCTTTGTTTGT 2491034 30 100.0 36 CTTTGTTTGT .............................. CTAAACTTAGAAGGAGGTGTGGGAAATGACTAACTT 2491100 30 100.0 36 TGACTAACTT .............................. ATGTCCTGCTCAACTTTCACCCGCTGGCCATCATGG 2491166 30 100.0 36 GCCATCATGG .............................. TTTGGAGGTGGTAGCTATGGGTTAGGTGAGAAAAAA 2491232 30 100.0 36 TGAGAAAAAA .............................. CCCAAGGGTTAAAAGGAGAAAAAGAGATAAGGATTG 2491298 30 100.0 37 ATAAGGATTG .............................. GTAAAACAGGCCGGTGTGGGAGCGGTGGAAGCTGGAA 2491365 30 100.0 36 GAAGCTGGAA .............................. AAAGGGGATGGCTATTACCGTGATCAGGAAAAGTAA 2491431 30 100.0 GGAAAAGTAA .............................. TGAGGATCTAAAAGAACGACTGCAAATTTAGTCATTA ========== ====== ====== ====== ========== ============================== 19 30 36 GTTTTTAGCTTACCTATAAGGATTTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.00,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [2640,142] Score: 0.18/0.18 # # Final direction: F [0.55,0 Confidence: HIGH] >NC_015589 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 3057908 30 96.7 37 ATGTAGTTTT .....................G........ TTAACGCCACAGCTTTTGATCCTAAAAACTACATTGG 3057975 30 100.0 38 ACTACATTGG .............................. CACCTTGTAGTAGTAGGTCAATCTCGATCTCTCCCTCC 3058043 30 100.0 37 CTCTCCCTCC .............................. CGAGGAAGCAGAGTTTCATGCTGGTGATGTATTAGAG 3058110 30 100.0 38 TGTATTAGAG .............................. CCTAATCCGCCTGATGTGGCTTTGGCCTTTCGGTTTAA 3058178 30 100.0 35 TTCGGTTTAA .............................. TTCAGGTTCTTCCATGCTTCCACAATAGAGTCAAC 3058243 30 100.0 37 TAGAGTCAAC .............................. TTTACGATACCGTCCCAAGCTTGTTGCACTGTTCCAT 3058310 30 100.0 37 ACTGTTCCAT .............................. TCCCATTCCACATAGTTGGTCACTTCCACCCGTCCGT 3058377 30 100.0 37 ACCCGTCCGT .............................. GATATTACTAAAAAATATGGTGATGTTGTTGCATTAT 3058444 30 100.0 37 GTTGCATTAT .............................. AAAACTCTTCTTTCAGCTTCGGCGGCTGCAGTTTGGA 3058511 30 100.0 34 GCAGTTTGGA .............................. CCACACTGGTTTTGCTCAGCAGTTGCTTAATCTC 3058575 30 100.0 37 GCTTAATCTC .............................. GGCTGCAAGGATGCCGTAAACGTCGCCATAGAGGATG 3058642 30 100.0 35 ATAGAGGATG .............................. TCGTATAGGCTCATGACACGAACCACCCTTTGCGT 3058707 30 100.0 35 CCCTTTGCGT .............................. GTTGGAGATAAATAGGATCCGGTTATCCGCCCCTG 3058772 30 100.0 36 TCCGCCCCTG .............................. TTCCTACTAAGGATAATCTTGCCCATTTTGCCCAGG 3058838 30 100.0 36 TTTGCCCAGG .............................. ATGCCAACGCACCGACAAAGAAAACATTGAGATGCT 3058904 30 100.0 36 TTGAGATGCT .............................. GTCTCAGTAGACAAAGAAAATGACACATATGACGGA 3058970 30 100.0 38 ATATGACGGA .............................. ATCGAAAACCGGGCCGTCAAATAGACATTGACCATCCC 3059038 30 100.0 35 TGACCATCCC .............................. TGATTATTACCTATGCGCACAACCACGTTATTGTG 3059103 30 100.0 36 CGTTATTGTG .............................. AATGCCAGGAGAACGTCTTATTGATGCTCTTGTAGA 3059169 30 100.0 37 CTCTTGTAGA .............................. TATTGCGGACTTTCTCCAATCCCTGGTCAGCAGCCAG 3059236 30 100.0 36 CAGCAGCCAG .............................. AATTACCGCAAATATTAGTCATATAGAACTAACTAA 3059302 30 100.0 36 AACTAACTAA .............................. AGAAGATATATTTTTAAAAATGAATCAAATGACTCC 3059368 30 100.0 35 AAATGACTCC .............................. GTATGAACGCTGCTTAGATCAAGTGGATCATTTTG 3059433 30 100.0 35 GATCATTTTG .............................. GATCGACATAGCAGTCACAAGGCTGCGAGAGTGTG 3059498 30 100.0 37 CGAGAGTGTG .............................. AGTCCGTTATCGTTTAACCATTGGCTGATTTTGTCAA 3059565 30 100.0 36 ATTTTGTCAA .............................. ATGGAAAGTAAGCCTTTGGATATAACGATCATCATT 3059631 30 100.0 36 GATCATCATT .............................. AGAATGAAAGAATTTGGACTGAAATTTTCAGTAGAA 3059697 30 100.0 36 TTCAGTAGAA .............................. TAAACTACAAGCACTTAAACAACTCAAAGCAGGGGA 3059763 30 100.0 36 AAGCAGGGGA .............................. GTCCATCCACGGGCAGAAAACGCCAGTTTGTATACG 3059829 30 100.0 36 TTTGTATACG .............................. TTTCATCTTTACCTGGGTTAGGCGAGGAAGACAATA 3059895 30 100.0 35 GAAGACAATA .............................. GCGATAAATCTCTTTCAAGTCTTTTTTTCTTGATG 3059960 30 100.0 36 TTTCTTGATG .............................. GATTTTCCTTGCCTTCACCGCTTGTTTTCTTGACTT 3060026 30 100.0 40 TTCTTGACTT .............................. TCTGCCGCAAGTGCGCGGAGGAGATCGAGATAGGTGGCTC 3060096 30 100.0 36 TAGGTGGCTC .............................. AGTTTGACATCTCCCTGAAACAAGTCCGAATCGCGG 3060162 30 100.0 39 CGAATCGCGG .............................. CATGTAGTCCGGAAACCAATGCCAGCCCACGTATTCACA 3060231 30 100.0 36 CGTATTCACA .............................. GAAATGTTGTTGCGTATGGCTTTTGTTCCATCTGGA 3060297 30 100.0 37 TCCATCTGGA .............................. AAGCCTCTCTTCCCTGCGTTCGTTGTGACGTAGCACA 3060364 30 100.0 37 ACGTAGCACA .............................. ATGCTCTGCAGGACCCAAATGTAATCAAACACGCTTA 3060431 30 100.0 37 AACACGCTTA .............................. CCATTTAGAATAATTCTTGCAGTGCGACCTAAACGGT 3060498 30 100.0 36 CCTAAACGGT .............................. TTCTTTGATGCGTTTTTGTCTGTCATCTTGGCATCG 3060564 30 100.0 35 CTTGGCATCG .............................. GTGCTACGCGTCGAATGTCACTGTCATTCCGTACA 3060629 30 100.0 35 ATTCCGTACA .............................. AAATGTTGTTGCGTATGGCTTTTGTTCCATCTGGA 3060694 30 100.0 37 TCCATCTGGA .............................. AGTCTTTTCTCCCCTGGTTTCAGTTCTTACAATGCGG 3060761 30 100.0 37 TACAATGCGG .............................. TTGTTGCCTTCATGTTTAATCCGAAAGACTATATCCT 3060828 30 100.0 37 ACTATATCCT .............................. GGCCGCCTTCTGCACCGCAGATAAAGCAGACTGGTAA 3060895 30 100.0 35 AGACTGGTAA .............................. GTGCTAAAACATTCGTCGGTTGTCTTTCTACATAT 3060960 30 100.0 38 TTCTACATAT .............................. TTAATCGTCGTCGGCTTATACCGACGACAACATCCGAT 3061028 30 100.0 AACATCCGAT .............................. CCGTCGGAAC ========== ====== ====== ====== ========== ============================== 48 30 36 GTTTCAAATCCTTATAGGTAGACTAGTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [478,185] Score: 0.18/0.18 # # Final direction: R [0.18,1.05 Confidence: HIGH] >NC_015589 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 3091332 30 100.0 35 CCTCCCACGG .............................. GAGGGAGAACACAATGGACTGGAGCGGACAGAAAA 3091397 30 100.0 38 GGACAGAAAA .............................. TCCGTTCCTAAACAACATAGGTCTTCCTTTTTTAATGC 3091465 30 100.0 35 TTTTTAATGC .............................. TCTTCTCCAATCGCTCCATTTCTTTTTCTAACTCC 3091530 30 100.0 39 TTCTAACTCC .............................. AGACGGGAACCATCGAATAGAGTAGCATCTACCGCCGGG 3091599 30 100.0 38 TACCGCCGGG .............................. GCTGTTCATCAGTTAGGGTATTGAGAGCTGCGATTTCC 3091667 30 100.0 35 TGCGATTTCC .............................. TTGCTTAAACTGGATGAAAAAACAGGGTCTATTGA 3091732 30 100.0 37 GGTCTATTGA .............................. CAGATGTCATATCCGACTATGTCAGACCACCCAAAAC 3091799 30 100.0 37 CACCCAAAAC .............................. CAGTCAAATCAAACTCCACCACATCATCAAACTTTCC 3091866 30 100.0 38 CAAACTTTCC .............................. TTGTTTCGCCAACCACGTACTGGAAACGAGCATCGTGG 3091934 30 100.0 35 AGCATCGTGG .............................. TCCGAGGCGGGAAGCTATATGGTACGTCAATCAGA 3091999 30 100.0 35 GTCAATCAGA .............................. CTAGATCGTCCTCATCGTCTGTGGCATCAATTTCA 3092064 30 100.0 39 ATCAATTTCA .............................. ATGGTTATGTTTATATCGAGTCCCCAAGTAATACTCGTC 3092133 30 100.0 36 AATACTCGTC .............................. GTGGTTTCTTTGCTTTACGCCATTGCTCAATAATTT 3092199 30 100.0 36 TCAATAATTT .............................. ATCTTTTCGGCGTCCGTCTCATACTGCCATCGGTCA 3092265 30 100.0 35 CCATCGGTCA .............................. TACATGATTGGGATGATTATGCCGGAAAACTTATG 3092330 30 100.0 38 AAAACTTATG .............................. TCCGTTGGTATAATTAGCTTGGTTGCACCACATGCAAC 3092398 30 100.0 37 CACATGCAAC .............................. TTGAAAGCTCTCTTAATACCTCAACAATACTCTTATT 3092465 30 100.0 36 TACTCTTATT .............................. ATCAGATTGGCTTGATCTTTCATTTCCACCCTCCCT 3092531 30 100.0 39 CACCCTCCCT .............................. TACCGTAATCAACGTTTATAGACTGACCGCCTTGGTCAT 3092600 30 100.0 36 CCTTGGTCAT .............................. AGAAGTCTATCCCCATATTAAAGATGGATGAGGAAA 3092666 30 100.0 34 GATGAGGAAA .............................. TTTCTTCTCGGCATCATCCATCCCTCCCTCGGAA 3092730 30 100.0 37 TCCCTCGGAA .............................. ACTTCTACCTCGACATTCACTACAATGCCGGGGTACT 3092797 30 100.0 35 CCGGGGTACT .............................. TTGGCAAGAATTGCTTGTTTTCCTCTGTTTCCGAA 3092862 30 100.0 38 TGTTTCCGAA .............................. AGATATGGCAACTGCAAAAAGTATGGCTGTCCGTAAAT 3092930 30 100.0 GTCCGTAAAT .............................. TGGTTTCAACCCTTGATGGTCGCTTCTTAAAAAAC ========== ====== ====== ====== ========== ============================== 25 30 36 GTTTTTAGCCTACCTATAAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.80,-1.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [53.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [357,276] Score: 0/0.18 # # Final direction: F [4.87,0.27 Confidence: HIGH] >NC_015600 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1395041 36 100.0 30 NNNNNNNNNN A.ACA.AA............................ AATGTCAATAGTTTTCTACAAATATTTTTG 1395107 36 100.0 30 NNNNNNNNNN .................................... TCAGCACCGAGAAAGTTATACTCACAGTCC 1395173 36 100.0 29 NNNNNNNNNN .................................... ACGCGAACCGTACAAGTATACACTAACGG 1395238 36 100.0 30 NNNNNNNNNN .................................... AATCTAAACGAACATTGTAAAATTGGTAAT 1395304 36 100.0 30 NNNNNNNNNN .................................... GATTGGCATTGATATTGAGCATAAAAATAG 1395370 36 100.0 30 NNNNNNNNNN .................................... TTAGCTGAATTGTCAATGGTCGTTTCAATC 1395436 36 100.0 30 NNNNNNNNNN .................................... GTGATTTAGAATGTGCTGTAGTGTCAGCAT 1395502 36 100.0 30 NNNNNNNNNN .................................... TAGGTTATGCGCACAGAGGTTTTGACGTTG 1395568 36 100.0 29 NNNNNNNNNN .................................... CACGCGCATATGCAACTAGTTTCCAATTA 1395633 36 100.0 30 NNNNNNNNNN .................................... TTACAGAGGGCGACGGTGAATTTGGTAAAG 1395699 36 100.0 29 NNNNNNNNNN .................................... TACGGTCTGGGTATGCTTGTGCTCGCCAT 1395764 36 100.0 30 NNNNNNNNNN .................................... GGCAATCCTTGGTCGCCTTTCCACTTGCTC 1395830 36 100.0 29 NNNNNNNNNN .................................... ATTTCATTTACCTTTCTTTGATTGATAAT 1395895 36 100.0 30 NNNNNNNNNN .................................... AAGAATTTAGCGCATAAAAATAGAAAAGGA 1395961 36 100.0 30 NNNNNNNNNN .................................... AATGCACACAGCGTATGTTTCGTTACTTGA 1396027 36 100.0 30 NNNNNNNNNN .................................... CAGTCAATCAATCTAAAGTGTATACAGCTA 1396093 36 100.0 30 NNNNNNNNNN .................................... GGAAACCGTCAATAACATAGCCTGTTGGTG 1396159 36 100.0 30 NNNNNNNNNN .................................... CTGATTCAAGGTCGTCACTATTACCAGAGA 1396225 36 100.0 30 NNNNNNNNNN .................................... TTGACTGCAATTTCAAACGGTAAGCTTACT 1396291 36 100.0 29 NNNNNNNNNN .................................... AAGCACTTGTAACAGTTTCTGGTGTATTG 1396356 36 100.0 31 NNNNNNNNNN .................................... TAGCTATCAATAATCGCTTGAAATGGGTCAG 1396423 36 100.0 30 NNNNNNNNNN .................................... CTTTGCATCTTCGTTGATTTTGATAAAAAA 1396489 36 100.0 29 NNNNNNNNNN .................................... TGGGTGGATGGGGTGCCGATGCTATTGTA 1396554 36 100.0 30 NNNNNNNNNN .................................... GAAGAACACAATCAAAATGTCTGACAATAC 1396620 36 100.0 31 NNNNNNNNNN .................................... CTGGAATGACGAATATTGTTGACGCTTTTGG 1396687 36 100.0 30 NNNNNNNNNN .................................... TAGAAAGGGGGTGAGAATATGGCAGAACAG 1396753 36 100.0 30 NNNNNNNNNN .................................... ATGGGTTTCATGACTAGAGATAAGAGGTGG 1396819 36 100.0 30 NNNNNNNNNN .................................... TACACTATAAATCACATACACGCACGCTAA 1396885 36 100.0 30 NNNNNNNNNN .................................... AAGGAAATATTTTTAACGACGGGCGACAAG 1396951 36 100.0 30 NNNNNNNNNN .................................... ATAGTTGTAACAACATTTTTAATGGTTTTA 1397017 36 100.0 30 NNNNNNNNNN .................................... CCTTGCACAGTGTCTGCAAGTGTTGTCTTA 1397083 36 100.0 30 NNNNNNNNNN .................................... GCTCTTATTGCTACTTTTTCAAAAGTAGAA 1397149 36 100.0 31 NNNNNNNNNN .................................... GATGAAGAAAATCTATCCGCTGAAGATGCTG 1397216 36 100.0 30 NNNNNNNNNN .................................... GAGACCAAACGGCAAACATAATCTTGCTAC 1397282 36 100.0 30 NNNNNNNNNN .................................... GTGTTGAAGATAATATCAACACCATCAGGA 1397348 36 100.0 29 NNNNNNNNNN .................................... TGGTGCACCTAGCTCCAATTTGCGTTGCC 1397413 36 100.0 31 NNNNNNNNNN .................................... TTAGGAGACAACGTTGTCGTTGGTGCTGGCG 1397480 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 38 36 29 GTTTTACGGTTACTTAAATCTTGAGAGTACAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:69.44%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [475,66] Score: 0.18/0.18 # # Final direction: F [0.55,0.41 Confidence: LOW] >NC_015589 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 3099787 30 100.0 37 GCTGCGACGG .............................. TGTTTCTTCATCTAAAGCAATAATTTCACCTTGAATG 3099854 30 100.0 39 ACCTTGAATG .............................. CGTAATCGTCAGATGTAATTTCCGGGGCGAAAACAGTCA 3099923 30 100.0 40 AAAACAGTCA .............................. TAGGGAGGATGCCATCATTTAAACATCCATAAAGGCCTTG 3099993 30 100.0 35 AAAGGCCTTG .............................. TTTTTTATAAAAGCGAGAGTAAGGGCGGCTATCGC 3100058 30 100.0 38 CGGCTATCGC .............................. TGTTACTCCGGCGCCGCTGGTCCTGACCCCCGGTGCCA 3100126 30 100.0 38 CCCGGTGCCA .............................. ATATAAATATATCATGATATATCATGATATGTCAATAC 3100194 30 100.0 35 ATGTCAATAC .............................. AAAAGATACTGAATTCTTTCATAAGGTTCATTACC 3100259 30 100.0 34 GTTCATTACC .............................. TCTTTTTGGCGTAACTCCTCTTTGAGCGGGATAG 3100323 30 100.0 38 AGCGGGATAG .............................. TCTGTCGATTGACTCTGAAGTGGGTGGGGCGGCGGCTA 3100391 30 100.0 36 GCGGCGGCTA .............................. CCCCAAGGTATAGGGGGTATAAATATAGTAGATACC 3100457 30 100.0 37 AGTAGATACC .............................. AACTGTCTGGCTTGATAATCCAACTTCATCGCCAATA 3100524 30 100.0 35 ATCGCCAATA .............................. TCGGTATTGAGTTATGCGACCCCACAACCTTCCAA 3100589 30 100.0 38 AACCTTCCAA .............................. ATTTCATTGGGGTTCATGAATTACATTTGTATGTTCCA 3100657 30 100.0 39 GTATGTTCCA .............................. TGAAAATAGAATTTTAAAGGAGAAACTTGGAGGTATTCA 3100726 30 100.0 39 GAGGTATTCA .............................. CTCTCCCACATCTATCCCCAAAGGGAACCCCTGGCCTGC 3100795 30 100.0 43 CCTGGCCTGC .............................. TATAGAGCCGCCGTTCAATTGTTCGGTTGCTATGTCAGTCTAT 3100868 30 100.0 36 GTCAGTCTAT .............................. TACATCATTTTATCCCTCTTTCTATTTTTCTTTTTC 3100934 30 100.0 39 TTTCTTTTTC .............................. ACTGAGTTCATGCTACACACTCCTTTGTTGTAGATATGA 3101003 30 100.0 36 GTAGATATGA .............................. TATTTTAAAGCGCTTTTATCATCACCTACTGGTGTA 3101069 30 100.0 37 TACTGGTGTA .............................. CCCCGGCACAATTTGAAAACCTATTCCCCATACAGAA 3101136 30 100.0 38 CCATACAGAA .............................. CTTGCACTCTTGCCCCGATCCCCGGCAGCTTTCTGAAT 3101204 30 100.0 34 CTTTCTGAAT .............................. ATAAATGGCATAGTGACAACACTAATACAGATAG 3101268 30 100.0 37 ATACAGATAG .............................. CCGGGACACTGACGTAGGCCGCTGCATCCGGAATGTG 3101335 30 100.0 37 CCGGAATGTG .............................. ACCCCGATACAGACGATGAATCTTCGGCTTGCGACTG 3101402 30 100.0 38 CTTGCGACTG .............................. GTATAGATCAAGTTGAACTTCTTCAGCGTCAGGGATTC 3101470 30 100.0 36 TCAGGGATTC .............................. TTACTGATGATTGCTTACTTTCTTTATTTACAAGCA 3101536 30 100.0 37 TTTACAAGCA .............................. TTTTTCACGAATTCCTCTGCTGCAACCATAGCAGCCA 3101603 30 100.0 37 ATAGCAGCCA .............................. GAATTGCAATAGCCTTGGCCTCTGTTGGCCGACCTAT 3101670 30 96.7 36 GCCGACCTAT .....C........................ TATTATCCTTACTTCCCCCTTCTCCATTTGTTTATA 3101736 30 100.0 TTTGTTTATA .............................. GCAGTTAAGG ========== ====== ====== ====== ========== ============================== 30 30 37 GTTTCTAGCTTACCTATAAGGATTTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.00,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [58.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [327,339] Score: 0/0.18 # # Final direction: F [1.05,0 Confidence: HIGH] >NC_015602 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1688512 29 96.6 32 ATCTTTTAGT ............................C CGACATACTTGTAATTGGTAGTGTCAATATCA 1688573 29 100.0 32 GTCAATATCA ............................. CTTCAAGGCTTGGGCCTTTTAGATCCCATTCG 1688634 29 100.0 32 ATCCCATTCG ............................. AGCTATTTAATTTTTCCTACCACTGCCCACCC 1688695 29 100.0 CTGCCCACCC ............................. ATCAGTCTTC ========== ====== ====== ====== ========== ============================= 4 29 32 GTGTTCTCCACGTATGTGGAGGTGATCCT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-9.00,-8.80] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [432,926] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_015602 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 666462 29 100.0 32 AACTTCATTG ............................. CTAAATGACTGTACTGTGTCTGATCAACTTCA 666523 29 100.0 32 ATCAACTTCA ............................. CTAACTAATGCTGTGCTTTTTCTAAGCTATTC 666584 29 100.0 32 TAAGCTATTC ............................. TTTCAAGAACTGAGCCGTATTCCCATGAGGTC 666645 29 93.1 CCATGAGGTC ..............C...........T.. AGTAAAAAATC ========== ====== ====== ====== ========== ============================= 4 29 32 AGGATCACCTCCACATACGTGGAGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [10,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-8.80,-9.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [1195,1052] Score: 0/0.18 # # Final direction: F [0.78,0.27 Confidence: MEDIUM] >NC_015634 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2499794 30 100.0 35 NNNNNNNNNN CCC........................... TTACACGGCTACCTAGCGCAAAACGGAATACCATA 2499859 30 100.0 35 NNNNNNNNNN .............................. TGGGAATTCCGGTTCGAATTTACGACCCTCAAGTA 2499924 30 100.0 35 NNNNNNNNNN .............................. AAAACGAATTTGGATATTGACCGCTCCCGTTCAGA 2499989 30 100.0 35 NNNNNNNNNN .............................. CTTTTATTATAACAATAAAAGTAACTTTTTTCAAA 2500054 30 100.0 37 NNNNNNNNNN .............................. AAAGGATAATCCGGCTGTTCCCCGGCGCTGTTTGCCT 2500121 30 100.0 35 NNNNNNNNNN .............................. GACGAGCAGTTCCGTGAGATCCTTCGCCAGGAAAT 2500186 30 100.0 38 NNNNNNNNNN .............................. AGCGTTGAGGTTGATGTCATTAAAACCGTTGTCAACTT 2500254 30 100.0 35 NNNNNNNNNN .............................. GTCAGCGCAAAATTCTTCAATTCTAAGGTCACGTT 2500319 30 100.0 36 NNNNNNNNNN .............................. AGCTAGACGCCCTGATTATGCGTACCATTAATAACA 2500385 30 100.0 36 NNNNNNNNNN ............T................. TTAATCAGTTTTCCGTCATCATCCCTAAAGTATAAC 2500451 30 100.0 35 NNNNNNNNNN .............................. GAAAAGGAACTGCTGAAAGAACATTGCAACCTGGA 2500516 30 100.0 36 NNNNNNNNNN .............................. CACAGAAAAGCGGGCGCCGACGCAGTCGGTTATCGA 2500582 30 100.0 36 NNNNNNNNNN ..................GGT......... GAAAAGGAACTGCTGAAAAAAACATTGCAACCTGGA 2500648 30 100.0 38 NNNNNNNNNN .A............................ GGGTCAACCGCTTTAAAATTAAAAAATGCATTACTACT 2500716 30 100.0 35 NNNNNNNNNN ...............G.............. GTCTTTTAAGTCCTTATATACTTTAGCTTTCATAA 2500781 30 100.0 33 NNNNNNNNNN .............................. TGTCGTGAAAGAATACCCTGCTTCCATCATTTT 2500844 30 100.0 36 NNNNNNNNNN TA............................ TACGGAAACACAACGGCATCCGGTCGTAGAAGTAGT 2500910 30 100.0 37 NNNNNNNNNN .............................. CTAAAGACACTTTTACAGATGACTCGGTTGATACGAT 2500977 30 100.0 36 NNNNNNNNNN .............................. ATCGTCTGGGTTTGCGGGAACAACCGACAAATTTGG 2501043 30 100.0 37 NNNNNNNNNN .............................. GGGGTATAGGTCACTTGGTATCATTGAAAATGCCAAA 2501110 30 100.0 36 NNNNNNNNNN .............................. GGAGTGAGAAAATGCGGGCTGAACGCTGCTACACAT 2501176 30 100.0 34 NNNNNNNNNN .............................. ATTTCTACTTGCTGGATCGCGAACATAATCGCCT 2501240 30 100.0 36 NNNNNNNNNN .............................. TATGCACCCGATTTATAGTAAAATGCCGATAAATAA 2501306 30 100.0 36 NNNNNNNNNN .............................. GGCGCTTTTACTATGTATAGGCGGTGAATGAAACAA 2501372 30 100.0 37 NNNNNNNNNN .............................. TTAAACAGCTAGTCGCTCCCTACGTGGGGGCGTGGAT 2501439 30 100.0 37 NNNNNNNNNN .............................. CTGAACCTGAATATATCGAAATGGATCATCTTGCGAT 2501506 30 100.0 35 NNNNNNNNNN .............................. ACCAATCCAGAAATCCCTGCAGCCGGGCATATTCT 2501571 30 100.0 36 NNNNNNNNNN .............................. GCGCAGTTCTTCGGAAATCCTGTGGGATATTTCGTC 2501637 30 100.0 35 NNNNNNNNNN .............................. TGGAGAGACATTGATGAGGCAGAAGGTGTTGTCCT 2501702 30 100.0 34 NNNNNNNNNN .............................. CAGACGACGCTTACGATTGGGACCAGATGCTTAT 2501766 30 100.0 36 NNNNNNNNNN .............................. GCTGGAGGAAGGGAAGGAACAGAAAAAGCTTATAAA 2501832 30 100.0 36 NNNNNNNNNN .............................. TAACGGCCTGCCTGATAAAAAACCGGATTATCCCTG 2501898 30 100.0 35 NNNNNNNNNN .............................. GCGCAGCCCAACAAACTTGGAAATCTCAAAAGCAT 2501963 30 100.0 36 NNNNNNNNNN .............................. CGCCAGTCCAGCGGACAGCCCAGGTAGATATAGGCC 2502029 30 100.0 35 NNNNNNNNNN .............................. GTATACGGAAACGTGTCTCAGTATCTCACGCACGT 2502094 30 100.0 35 NNNNNNNNNN .............................. TTTGATAACCGCATTGTCGATCGTCGTTTGCCCGG 2502159 30 100.0 36 NNNNNNNNNN .............................. GCTACCATCTGGATTTATTTTCTGCCAGATAAAAGC 2502225 30 100.0 35 NNNNNNNNNN .............................. GTTTCTGGACTTTCTGGATGATTAGCATCAGTCAG 2502290 30 100.0 36 NNNNNNNNNN .............................. GCTGGAGGAAGGGAAGGAACAGAAAAAGCTTATAAA 2502356 30 100.0 33 NNNNNNNNNN .............................. GGGAAATACATGCGGTTTCGAAAGAATTGGAGA 2502419 30 100.0 37 NNNNNNNNNN .............................. GTACACCAGGTCATGGTAAGATAAGTTGTAGATTGAT 2502486 30 100.0 35 NNNNNNNNNN .............................. GCAATTTTCCATGCGTTGTTCATAAGTACTTTCAT 2502551 30 100.0 35 NNNNNNNNNN .............................. AAATCCCCAATATTCATACCATCCGGCAGGTTCCA 2502616 30 100.0 34 NNNNNNNNNN .............................. GATATAAACTTGGTGAAAAAGCAAAGGTATATTG 2502680 30 100.0 36 NNNNNNNNNN .............................. CCGTTAAGCGCGGCGACACCGTTAGCGAGATAGCTG 2502746 30 100.0 36 NNNNNNNNNN .............................. TAAATGAATGGCAGACCGAGTATAATCTCGCGACAA 2502812 30 100.0 34 NNNNNNNNNN .............................. TTCTACTCAATACAGCTGGCTGTCAGTCATCTTT 2502876 30 100.0 37 NNNNNNNNNN .............................. AAAAACGTTGGACGCTATCGTGCAAATAAGCAAGTTT 2502943 30 100.0 36 NNNNNNNNNN .............................. CATTTCTTTTTTTGTTAAAGAGTATGGACAACTCTT 2503009 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 50 30 35 ATTTAAATACATCCAATGTTAAAGTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [25,475] Score: 0.18/0.18 # # Final direction: R [0.27,0.59 Confidence: MEDIUM] >NC_015634 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2499859 30 100.0 35 GAATACCATA .............................. TGGGAATTCCGGTTCGAATTTACGACCCTCAAGTA 2499924 30 100.0 35 CCCTCAAGTA .............................. AAAACGAATTTGGATATTGACCGCTCCCGTTCAGA 2499989 30 100.0 35 CCCGTTCAGA .............................. CTTTTATTATAACAATAAAAGTAACTTTTTTCAAA 2500054 30 100.0 37 TTTTTTCAAA .............................. AAAGGATAATCCGGCTGTTCCCCGGCGCTGTTTGCCT 2500121 30 100.0 35 CTGTTTGCCT .............................. GACGAGCAGTTCCGTGAGATCCTTCGCCAGGAAAT 2500186 30 100.0 38 GCCAGGAAAT .............................. AGCGTTGAGGTTGATGTCATTAAAACCGTTGTCAACTT 2500254 30 100.0 35 TTGTCAACTT .............................. GTCAGCGCAAAATTCTTCAATTCTAAGGTCACGTT 2500319 30 100.0 36 AGGTCACGTT .............................. AGCTAGACGCCCTGATTATGCGTACCATTAATAACA 2500385 30 96.7 36 ATTAATAACA ............T................. TTAATCAGTTTTCCGTCATCATCCCTAAAGTATAAC 2500451 30 100.0 35 AAAGTATAAC .............................. GAAAAGGAACTGCTGAAAGAACATTGCAACCTGGA 2500516 30 100.0 36 GCAACCTGGA .............................. CACAGAAAAGCGGGCGCCGACGCAGTCGGTTATCGA 2500582 30 90.0 38 CGGTTATCGA ..................GGT......... GAAAAGGAACTGCTGAAAAAAACATTGCAACCTGGAAA 2500650 30 93.3 38 AACCTGGAAA --............................ GGGTCAACCGCTTTAAAATTAAAAAATGCATTACTACT 2500718 30 96.7 35 CATTACTACT ...............G.............. GTCTTTTAAGTCCTTATATACTTTAGCTTTCATAA 2500783 30 100.0 33 GCTTTCATAA .............................. TGTCGTGAAAGAATACCCTGCTTCCATCATTTT 2500846 30 93.3 36 CCATCATTTT TA............................ TACGGAAACACAACGGCATCCGGTCGTAGAAGTAGT 2500912 30 100.0 37 TAGAAGTAGT .............................. CTAAAGACACTTTTACAGATGACTCGGTTGATACGAT 2500979 30 100.0 36 TTGATACGAT .............................. ATCGTCTGGGTTTGCGGGAACAACCGACAAATTTGG 2501045 30 100.0 37 ACAAATTTGG .............................. GGGGTATAGGTCACTTGGTATCATTGAAAATGCCAAA 2501112 30 100.0 36 AAATGCCAAA .............................. GGAGTGAGAAAATGCGGGCTGAACGCTGCTACACAT 2501178 30 100.0 34 TGCTACACAT .............................. ATTTCTACTTGCTGGATCGCGAACATAATCGCCT 2501242 30 100.0 36 ATAATCGCCT .............................. TATGCACCCGATTTATAGTAAAATGCCGATAAATAA 2501308 30 100.0 36 CGATAAATAA .............................. GGCGCTTTTACTATGTATAGGCGGTGAATGAAACAA 2501374 30 100.0 37 AATGAAACAA .............................. TTAAACAGCTAGTCGCTCCCTACGTGGGGGCGTGGAT 2501441 30 100.0 37 GGGCGTGGAT .............................. CTGAACCTGAATATATCGAAATGGATCATCTTGCGAT 2501508 30 100.0 35 ATCTTGCGAT .............................. ACCAATCCAGAAATCCCTGCAGCCGGGCATATTCT 2501573 30 100.0 36 GGCATATTCT .............................. GCGCAGTTCTTCGGAAATCCTGTGGGATATTTCGTC 2501639 30 100.0 35 ATATTTCGTC .............................. TGGAGAGACATTGATGAGGCAGAAGGTGTTGTCCT 2501704 30 100.0 34 GTGTTGTCCT .............................. CAGACGACGCTTACGATTGGGACCAGATGCTTAT 2501768 30 100.0 36 AGATGCTTAT .............................. GCTGGAGGAAGGGAAGGAACAGAAAAAGCTTATAAA 2501834 30 100.0 36 AGCTTATAAA .............................. TAACGGCCTGCCTGATAAAAAACCGGATTATCCCTG 2501900 30 100.0 35 ATTATCCCTG .............................. GCGCAGCCCAACAAACTTGGAAATCTCAAAAGCAT 2501965 30 100.0 36 TCAAAAGCAT .............................. CGCCAGTCCAGCGGACAGCCCAGGTAGATATAGGCC 2502031 30 100.0 35 GATATAGGCC .............................. GTATACGGAAACGTGTCTCAGTATCTCACGCACGT 2502096 30 100.0 35 TCACGCACGT .............................. TTTGATAACCGCATTGTCGATCGTCGTTTGCCCGG 2502161 30 100.0 36 GTTTGCCCGG .............................. GCTACCATCTGGATTTATTTTCTGCCAGATAAAAGC 2502227 30 100.0 35 AGATAAAAGC .............................. GTTTCTGGACTTTCTGGATGATTAGCATCAGTCAG 2502292 30 100.0 36 CATCAGTCAG .............................. GCTGGAGGAAGGGAAGGAACAGAAAAAGCTTATAAA 2502358 30 100.0 33 AGCTTATAAA .............................. GGGAAATACATGCGGTTTCGAAAGAATTGGAGA 2502421 30 100.0 37 GAATTGGAGA .............................. GTACACCAGGTCATGGTAAGATAAGTTGTAGATTGAT 2502488 30 100.0 35 GTAGATTGAT .............................. GCAATTTTCCATGCGTTGTTCATAAGTACTTTCAT 2502553 30 100.0 35 GTACTTTCAT .............................. AAATCCCCAATATTCATACCATCCGGCAGGTTCCA 2502618 30 100.0 34 GCAGGTTCCA .............................. GATATAAACTTGGTGAAAAAGCAAAGGTATATTG 2502682 30 100.0 36 AGGTATATTG .............................. CCGTTAAGCGCGGCGACACCGTTAGCGAGATAGCTG 2502748 30 100.0 36 GAGATAGCTG .............................. TAAATGAATGGCAGACCGAGTATAATCTCGCGACAA 2502814 30 100.0 34 CTCGCGACAA .............................. TTCTACTCAATACAGCTGGCTGTCAGTCATCTTT 2502878 30 100.0 37 AGTCATCTTT .............................. AAAAACGTTGGACGCTATCGTGCAAATAAGCAAGTTT 2502945 30 100.0 36 AAGCAAGTTT .............................. CATTTCTTTTTTTGTTAAAGAGTATGGACAACTCTT 2503011 30 100.0 GACAACTCTT .............................. CCCAGTATTT ========== ====== ====== ====== ========== ============================== 49 30 35 ATTTAAATACATCCAATGTTAAAGTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [90,473] Score: 0.18/0.18 # # Final direction: R [0,0.59 Confidence: HIGH] >NC_015635 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1245236 37 100.0 37 NNNNNNNNNN ..................................... CTTAGGGTTTGGTCTGCCCCTACTGCCGTTCCTCCCA 1245310 37 100.0 37 NNNNNNNNNN ..................................... ACGGTCTGCACATTGGCGAACCGCTTCTGCGAGCGGG 1245384 37 100.0 37 NNNNNNNNNN ..................................... GTGAGCGGGTCACGCTTCGCCTGCTCTGCGACGAACT 1245458 37 100.0 39 NNNNNNNNNN ..................................... AAAAAGGTCACCTTGTTGGCCTTTCCGTCTTTTCCGAAC 1245534 37 100.0 35 NNNNNNNNNN ..................................... GACGTGCCGGCGTTACCGGCTCCTTGACGGTGACC 1245606 37 100.0 42 NNNNNNNNNN ..................................... ACAAGGACTACGTCTTTGTAGCCCTCCGTGATAGGGAGGAAC 1245685 37 100.0 36 NNNNNNNNNN ..................................... TTCCGAGTCTTCGACGCGTCCGAGAGTGTACGATCC 1245758 37 100.0 33 NNNNNNNNNN ..................................... TCGCGTCGCGCAGTTGCCTCCAAGGAGACGAAA 1245828 37 100.0 35 NNNNNNNNNN ..................................... ATGACCGTAACGGCGATGGCCATCATGATGAAGTC 1245900 37 100.0 39 NNNNNNNNNN ..................................... TTGCTGAGTCCGCCACCTTCTTGCACGTGTTGCGCGAGA 1245976 37 100.0 35 NNNNNNNNNN ..................................... CTGACGAACATGCCGGTAACACAGCCATCAGAGGC 1246048 37 100.0 35 NNNNNNNNNN ..................................... TCGACGGCTCCTGGCTGGGGCTCGTCGAGCTGGAC 1246120 37 100.0 41 NNNNNNNNNN ..................................... TGCAGCCATCGACCGCGACGGTCACTGTGCCCTCAGGCTTG 1246198 37 100.0 38 NNNNNNNNNN ..................................... GTTTGCGGCGGCGGCAGCAACCCTTCAGATGGGGTTGG 1246273 37 100.0 33 NNNNNNNNNN ..................................... CTTGACGGGGTTGCCCCAGTATGTGGCGTGCAC 1246343 37 100.0 36 NNNNNNNNNN ..................................... GCTCGACGCGTTGGCCTTGGCGGATGCCGTAGCCGA 1246416 37 100.0 30 NNNNNNNNNN ..................................... CAGGTCGGTAGAGCCGATCGCGCCCGAAAG 1246483 37 100.0 37 NNNNNNNNNN ..................................... GAAGCAACGCAGAGCTCCTTCTGTAGAAAGGATGCTC 1246557 37 100.0 42 NNNNNNNNNN ..................................... GTGGTCGGATCAGCCTTAGGGGCCGAGGAGGTCTCAGCCTCT 1246636 37 100.0 31 NNNNNNNNNN ..................................... CCCATTGGCGTACCTGAGTGGTCCTCTGCGC 1246704 37 100.0 34 NNNNNNNNNN ..................................... CGTCGCCAAGAATGGCTACTCTTGTGGCCTTATG 1246775 37 100.0 39 NNNNNNNNNN ..................................... CCGCTGGGCCAGCCTGGCCCGGCCATCCGGCGTGTACCG 1246851 37 100.0 30 NNNNNNNNNN ..................................... GTGCTGGTTGGGTTGCTGTATATGTCGCAT 1246918 37 100.0 39 NNNNNNNNNN ..................................... GGGTCGTCAACGCATGCAACAGCGTAAGCGCTGTACAGT 1246994 37 100.0 33 NNNNNNNNNN ..................................... TCAAGCAAAGCCGTGCCTACCAATCGATAAATA 1247064 37 100.0 35 NNNNNNNNNN ..................................... AATCTACCAGCCTCCGTACACGGTGACGTCGATCC 1247136 37 100.0 34 NNNNNNNNNN ..................................... CGGAAACCACCACACCGTCGATCTCACGAGTACG 1247207 37 100.0 34 NNNNNNNNNN ..................................... GGCAGCTGACAGCGGCGCTCGCCGTCAGTGGCGC 1247278 37 100.0 33 NNNNNNNNNN ..................................... CTGGTCTATTATGGGGCTTGATCTTTTGAGGTG 1247348 37 100.0 31 NNNNNNNNNN ..................................... TCAGTCGTTTGACCTGACCAGTTCGGTACCG 1247416 37 100.0 39 NNNNNNNNNN ..................................... TCAGTCGACGACTGTTCCCTCGACCACTGGGGCGGTCTC 1247492 37 100.0 40 NNNNNNNNNN ..................................... GTCCGAGTATTGGGTCGGCGTGGATGATGTCGATGTTGTG 1247569 37 100.0 31 NNNNNNNNNN ..................................... TGTTCAAGACGCCATCAGGCAATGCTGGACA 1247637 37 100.0 34 NNNNNNNNNN ..................................... GATCCGGTGAGATGACACCAGACCAGCTTGAGAT 1247708 37 100.0 31 NNNNNNNNNN ..................................... TTTGTTGTCAAATGAGTTGGTTTTTCATGTG 1247776 37 100.0 43 NNNNNNNNNN ..................................... AGCTTGCCTCGCAGACGGCCATCCCTCCATCGATGTCCCTGTA 1247856 37 100.0 36 NNNNNNNNNN ..................................... CATTCATGCGCTGAGGAACGAGACTGTGCTTGATCA 1247929 37 100.0 37 NNNNNNNNNN ..................................... GATGCCTGCCGCTTCGGCGATCTTCAGGGCGTTGCAT 1248003 37 100.0 36 NNNNNNNNNN ..................................... AGACCATACCGCTTGTTGGGCGATATGGTCTCTCAA 1248076 37 100.0 32 NNNNNNNNNN ..................................... GATTCTGGATCGCCCACACAGTGACAGGTTGG 1248145 37 100.0 33 NNNNNNNNNN ..................................... ACGAGGACCGAGCCGCCTTGGCGATGGCCTGCC 1248215 37 100.0 34 NNNNNNNNNN ..................................... TCTCGAAGTTGTCGGCCGCAGTCGACAAGTTCTG 1248286 37 100.0 38 NNNNNNNNNN ..................................... GTAGGTCAGAGTGCCGTTGCCGATTCCCGTCCTGAGCT 1248361 37 100.0 35 NNNNNNNNNN ..................................... GTTGCGGGATACTTATAGCCTCCCCAACCTTTGGG 1248433 37 100.0 36 NNNNNNNNNN ..................................... GGCAAACGGTCACACCAGGGGCCAGCCAAACATGTG 1248506 37 100.0 33 NNNNNNNNNN ..................................... GCCCCCAGCCAGGGGTGGGGTCCTTCAGGTGCT 1248576 37 100.0 42 NNNNNNNNNN ..................................... GTGACGCGTTGGTTGAACTCGTCCTTTTCGTGCCGCAGTTGC 1248655 37 100.0 38 NNNNNNNNNN ..................................... GATCGTCTTCGCGCGACCTTTCCAGAGGTTCTGGTGGT 1248730 37 100.0 37 NNNNNNNNNN ..................................... ACGACGTCGCCGACCGGTGTCCAGCCCAGGCTGAGCC 1248804 37 100.0 33 NNNNNNNNNN ..................................... GCGACGCTCGCGGTGGGCCGTCTCCAACTCCTG 1248874 37 100.0 31 NNNNNNNNNN ...............G..................... ACAGCAGAATGATCGCGTCCAGAAGCAACAT 1248942 37 100.0 37 NNNNNNNNNN ..................................... CCCGTACCGCTGGATCAGCGTACGGCTGGAGGAGTTC 1249016 37 100.0 38 NNNNNNNNNN ..................................... GAGACCCCCGGCCTGGACGGTAGGGCTAGAGCGGCGTT 1249091 37 100.0 39 NNNNNNNNNN ..................................... GATGTACGGCAGGCTGGTGCCGTTCTGCAGGCGGATCAG 1249167 37 100.0 40 NNNNNNNNNN ..................................... CGGCTCTCTACGACGCCGACTGCATTGAAGGCTCGCCAGT 1249244 37 100.0 34 NNNNNNNNNN ..................................... TGGACTCCGGAGGAGTCCTGCGTGGTACGGGTGC 1249315 37 100.0 37 NNNNNNNNNN ....C................................ CAGAAACCCCACACATAGGGCTTCTTGGGCATCGGGG 1249389 37 100.0 43 NNNNNNNNNN ....C................................ AGCTGCCGTACCGCACGAGCGTGCCGGACCTCCGGGTCCTTCT 1249469 37 100.0 57 NNNNNNNNNN ....C................................ TGGAGCGGTCTGGGCCGCCGGAGTAGCCTGAGCCGCGCCACCACCGCCAACTTGCCG 1249563 37 100.0 41 NNNNNNNNNN .....T....................T.......G.. GCCACGAGAGTCACGGAGATTAGGGCTGCCGCGGCGACGGT 1249641 37 100.0 40 NNNNNNNNNN TC...T..T.....T...................... ATGACGCCTTGTCCGCGGGACGTCGGGCGTGGCAAGTCAG 1249718 37 100.0 35 NNNNNNNNNN .....T.....G......................... AGCCGCTTGGCAGGCGGGGCCCACATCAGCGGGCA 1249790 37 100.0 1 NNNNNNNNNN .....T.............................G. NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 63 37 36 GTCAGCGACCGCATCTCGCGAATGAGCGAATAGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [12,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-5.30,-5.30] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [35.0-35.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [210,428] Score: 0.18/0.18 # # Final direction: F [0.78,0.18 Confidence: MEDIUM] >NC_015636 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 103466 30 100.0 38 CTTTATTTAG .............................. AGAAAATTAACAGCAAAAATTGAAAATGTAAAAATAGT 103534 30 100.0 36 TAAAAATAGT .............................. ATAAAATGTTTTAAATTTATTATATGATTCATCTCC 103600 30 100.0 35 ATTCATCTCC .............................. GCAGTAGAAGAGATAATTATAATTAAAGAGCTCAA 103665 30 100.0 38 AAGAGCTCAA .............................. TATCAATTTGAATGTATTATATCAGTTGATACTAAAAT 103733 30 100.0 36 ATACTAAAAT .............................. AAGTGCAGATATTCTTTCAATGATAGCAAAATCGTT 103799 30 100.0 37 CAAAATCGTT .............................. TTAAAAGTTCGTGCAGAAAAAACCTAACTTTCCTTGC 103866 30 100.0 39 CTTTCCTTGC .............................. TTAAAGAACCAACATTAAAAGAATACATATTAAAAGTAT 103935 30 100.0 36 TTAAAAGTAT .............................. AAAATAAGCGAAATAATAACCTATGTTAATAAAAAA 104001 30 100.0 34 TAATAAAAAA .............................. GGACAAATACTTCAAATTATTGAGAGTATTTTAT 104065 30 100.0 37 AGTATTTTAT .............................. CTTATGTCTTTTTTTAGTTTGGCTTGCGGATGGTCGT 104132 30 100.0 37 GGATGGTCGT .............................. GATAAATTTAAAACACATGATTTTGTTAAATTTTTTA 104199 30 100.0 37 AAATTTTTTA .............................. AGTCGTTAAAAAATTATCTAAAAAATTATCTAAAAAA 104266 30 100.0 36 ATCTAAAAAA .............................. TATCACATCCGTTAAAGCATATGTAGTTGATGATTC 104332 30 100.0 34 TTGATGATTC .............................. GTTATTGATGTTGATAACTTATACAGTAGGCTAA 104396 30 100.0 36 AGTAGGCTAA .............................. ATAGTAGTTTGTAATTAACATCTGTTTTAGTTTAGG 104462 30 100.0 37 TTAGTTTAGG .............................. CTGGAAATTTCCAGCAAGAAGTTTAAACGGATATGTT 104529 30 100.0 38 CGGATATGTT .............................. TTAGGAACTACAACACCAATTGATTTTTTATTACCAGA 104597 30 100.0 38 TATTACCAGA .............................. AAAAATGAAATAAGTTTAACTGAATTATGTGTTTCATC 104665 30 100.0 38 GTGTTTCATC .............................. TGTGTTCACCTCATACGTATCTAATATATTGGTGAATT 104733 30 100.0 44 TTGGTGAATT .............................. GGAAGAGATATTGGAATGTCCAGGTGGGGCATACCATTACTCCA 104807 30 100.0 37 CATTACTCCA .............................. ATTTTTAGGGGTTGTTGGTTTTACAGTTTTTCTTTTA 104874 30 100.0 36 TTTTCTTTTA .............................. AATCATCCCTATTATATTAGCCGCTATCATCATCTT 104940 30 100.0 36 TCATCATCTT .............................. CGGGGGTTACCACAACCACCACCATTACACATATAG 105006 30 100.0 36 ACACATATAG .............................. TAATAGAAATATAAACCCTGAAGAATGCGAAGAATA 105072 30 100.0 GCGAAGAATA .............................. AGTTCAAAAA ========== ====== ====== ====== ========== ============================== 25 30 36 ATTTCCATCCATCAATGGTCTGATTTTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.10,-1.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [83.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [42,373] Score: 0.18/0.18 # # Final direction: R [0.27,0.55 Confidence: MEDIUM] >NC_015636 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1302586 30 100.0 37 AATTATATAA .............................. ATAAAATTAAAACAAAGAAGGGAAAGGATATAATTAT 1302653 30 100.0 36 ATATAATTAT .............................. ATAGCAGGAATGATTATTATTTTTTAAAAGAGATGT 1302719 30 100.0 36 AAAGAGATGT .............................. TCGCGTATTTTATTATCAATGACATTATATATACTG 1302785 30 100.0 37 ATATATACTG .............................. CAACAGTGCTATCTTTTCCCCCTGAAAACAATATTGC 1302852 30 100.0 37 ACAATATTGC .............................. GGATTATACACGGTGCTACACTGCTTCTTGCCCAATA 1302919 30 100.0 34 TTGCCCAATA .............................. TTAACAAATATTATAAAGCTAATGAAAAAAGTAA 1302983 30 100.0 36 AAAAAAGTAA .............................. TTAATTATTTAGTAATATTCAAAAATCAATATATAA 1303049 30 100.0 36 CAATATATAA .............................. CTGCAATATTAGCAGATTGGGGGATGTATTCATATA 1303115 30 100.0 36 TATTCATATA .............................. TAGCGATAATTTATTAGCGAATCGTTGAATAACTTT 1303181 30 100.0 39 GAATAACTTT .............................. CTAAATTAAAAAACATCATTTCACATCCTTACAAATTAC 1303250 30 100.0 35 TACAAATTAC .............................. GATTTTGCATAAAAATTATAACTTGCAGTATCTTT 1303315 30 100.0 37 CAGTATCTTT .............................. CGAGATTTTGCCCCCATTCATTTACAGCACTGAACCC 1303382 30 100.0 37 CACTGAACCC .............................. CTTCTATCTCTTTAACTTCTTTTTCAATCTGTTTATC 1303449 30 100.0 36 TCTGTTTATC .............................. CAACTAAAAAGGGATTATTGGAGGAAGGAACTAAAA 1303515 30 100.0 37 GGAACTAAAA .............................. TTAATAAAAGCAAAACAAGGACTTATGAATTAATCGA 1303582 30 100.0 36 AATTAATCGA .............................. ACTGTATAAATAAAATAGATATGTTAATAAATTCAA 1303648 30 100.0 36 ATAAATTCAA .............................. GCTTATTTTATGACCCAACAGATGAAGCATATAAGA 1303714 30 100.0 36 GCATATAAGA .............................. GCTTATTTTATGACCCAACAGATGAAGCATATAAGA 1303780 30 100.0 37 GCATATAAGA .............................. TCTCTTGGAACTAAATGTATCGCATCGTAGAATTTGT 1303847 30 100.0 36 TAGAATTTGT .............................. TTTTTATTACGCCACACATTATATTCTTTTTTATAT 1303913 30 100.0 37 TTTTTTATAT .............................. CCATACCATAAAGTTCTGACTCCATTTTTATATTCAA 1303980 30 100.0 36 TTATATTCAA .............................. CCAGTTATTATTATGTTATCGATAAAATTAATATTA 1304046 30 100.0 37 ATTAATATTA .............................. ATAATTTTCCCGTTATTATTATATCAATGGGGTTTGG 1304113 30 100.0 38 TGGGGTTTGG .............................. GTGGTATATAATATGTCTAAATTTAAAACTAAATCATG 1304181 30 100.0 34 CTAAATCATG .............................. ACATTCTGATGATGAGCCTTCCCCCAGCATGATT 1304245 30 100.0 52 CAGCATGATT .............................. GGTCTGATTTTAACGGAAGTAATAATTCTGTAATTCCTACCAATATGATTAC 1304327 30 100.0 36 ATATGATTAC .............................. CTTAGATTGTCCACCTAACGGAGTATGTGCAAAATT 1304393 30 100.0 37 GTGCAAAATT .............................. ATAATGTAAATATGATAAACGCTGGTATTGTAAATTA 1304460 30 100.0 36 TTGTAAATTA .............................. ATATACAATAATTATGTCCCTGTGACACTATACACA 1304526 30 100.0 36 ACTATACACA .............................. TTTGAGCGATGATGAGGGCAATCCTCGGAGCCGTAA 1304592 30 100.0 GGAGCCGTAA .............................. AGTTTAAAAT ========== ====== ====== ====== ========== ============================== 31 30 36 ATTTCCATCCATCAATGGTCTGATTTTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.10,-1.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [78.3-78.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [10,408] Score: 0.18/0.18 # # Final direction: R [0,0.55 Confidence: HIGH] >NC_015636 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1529545 30 100.0 36 TGTAGTATCA .............................. TGCAATCATTGAAAAAATATCTGCACTTATATATTG 1529611 30 100.0 35 TTATATATTG .............................. AAAGCTCGTTCTGGTGTCATCGAAATAATTTTAAC 1529676 30 100.0 37 TAATTTTAAC .............................. TAATACAATTTCTCATATTTCGCATACTATTCATAAT 1529743 30 100.0 35 TATTCATAAT .............................. AAAGCTCGTTCTGGTGTCATCGAAATAATTTTAAC 1529808 30 100.0 37 TAATTTTAAC .............................. TAATACAATTTCTCATATTTCGCATACTATTCATAAT 1529875 30 100.0 35 TATTCATAAT .............................. AAAGCTCGTTCTGGTGTCATCGAAATAATTTTAAC 1529940 30 100.0 37 TAATTTTAAC .............................. TAATACAATTTCTCATATTTCGCATACTATTCATAAT 1530007 30 100.0 36 TATTCATAAT .............................. CATTAAATAGTGATGTTCCAAGAATTAAAGTGTTCC 1530073 30 100.0 42 AAAGTGTTCC .............................. GGAGCTCCGATAGTGTTGAGATTTCATAATATATATTATCAT 1530145 30 100.0 41 ATATTATCAT .............................. TTATTATATTCATCATCTAAATTAATTAATTCTTCCTGCGT 1530216 30 100.0 36 CTTCCTGCGT .............................. TTGAATGACTATATACATCATTCAAAGGCAAATTTA 1530282 30 100.0 42 GGCAAATTTA .............................. TTCAATAGATGAAAAATAAACAGTCTGTAAATAGAGCTTCAT 1530354 30 100.0 39 AGAGCTTCAT .............................. TGAAATATTAAGTGACTTGGAACTTATAAATGACATTGT 1530423 30 100.0 35 ATGACATTGT .............................. TAAGCCTCTTTTTGTGATGCATCATAATAGTAATC 1530488 30 100.0 34 AATAGTAATC .............................. AGATTGGAAAGGCAGGAATGAAAGGTGTTAGATA 1530552 30 100.0 38 GTGTTAGATA .............................. ACGCATAAATCTTTTATCATATCATTCCTCAAAGCTGC 1530620 30 100.0 37 TCAAAGCTGC .............................. CTTCTATTTTATTAATAATATATTGTGCCACTTCATC 1530687 30 100.0 36 CCACTTCATC .............................. CTAAACAGTGCATACCGCACCTACATGTAATTTTAT 1530753 30 100.0 38 GTAATTTTAT .............................. AGATTCTATCTTTTCGGGTCTTTTAGGTTGTGGTTGAA 1530821 30 100.0 35 TGTGGTTGAA .............................. CTTTAATGTCTTCGTCAATAGGTTCTGGCGTTTCC 1530886 30 100.0 36 TGGCGTTTCC .............................. ATAATTTCACCTTCATTATCTAAATTCCAATTAATA 1530952 30 100.0 44 CCAATTAATA .............................. GAGGATGTTCTTACAAATGCATTTTATAAAGGATATTTAAAAGA 1531026 30 100.0 37 ATTTAAAAGA .............................. TAAATCTATTATGTAATAATATTCAATGTCTGAAATA 1531093 30 100.0 37 GTCTGAAATA .............................. AGATATATGAAAAAGAAAAAAGAAAAGCAAATTATAG 1531160 30 96.7 CAAATTATAG .............................C TTTTTAATTT ========== ====== ====== ====== ========== ============================== 25 30 37 GTTAAAATCAGACCATTGATGGATGGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.40,-1.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [76.7-85.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [670,24] Score: 0.18/0.18 # # Final direction: F [0.96,0.27 Confidence: MEDIUM] >NC_015636 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1629469 30 100.0 43 TACCAATATG .............................. AAAAATTACCCCCTTGAAAAAAATATGCAAACATGCAAACCGA 1629542 30 100.0 37 TGCAAACCGA .............................. TGAAATACGCAGATACTCCTATTATTTGTATATCTCC 1629609 30 100.0 36 GTATATCTCC .............................. TTGCCTTTTCTATCAGGGCCTCTATTTCTGTAAATT 1629675 30 100.0 37 TCTGTAAATT .............................. TGGAAGCCACAGCAAAATATGGGTTTGCTGGTAAAGT 1629742 30 100.0 39 CTGGTAAAGT .............................. TAAAAATAGCAGGATATGATAAAAATAATGCACCCAATC 1629811 30 100.0 38 GCACCCAATC .............................. CATTTATGGAGACGCCACAGAGCATAAAAATGAAAGCT 1629879 30 100.0 32 AATGAAAGCT .............................. TCAATTTTGATAATCAAGCAATACATATAAAG 1629941 30 100.0 37 ACATATAAAG .............................. AATTATAATGAGGTTAGGGAAGAGGCTTATTCTCTTT 1630008 30 100.0 37 TATTCTCTTT .............................. CATACATTTTCGATAATAAAACAAGTGGAACAGTAAA 1630075 30 100.0 42 GAACAGTAAA .............................. TTATTATAATTTAATAAGTGTAGGATGTGGTTTTCCAAGATA 1630147 30 100.0 38 TTCCAAGATA .............................. TATATTATAGAATGCCCTAATTCTATGCATTCTTTATC 1630215 30 100.0 38 ATTCTTTATC .............................. TGTTCTTTAAAGCGACTTCGCCCGATTCGTGGTATTGG 1630283 30 100.0 34 GTGGTATTGG .............................. CTTATCTATCGATTTAGATAAGGTTATTGGAAAA 1630347 30 100.0 37 TATTGGAAAA .............................. CTGTAAATGACTTTATAATCCCCGTGTGTTCCATAGC 1630414 30 100.0 41 GTTCCATAGC .............................. TAGTTAATAGTTAAGGGTTCTATCTATTGGAATATATTTCC 1630485 30 100.0 37 ATATATTTCC .............................. AAAGAGGTATCTTTCAACTCAGGAAGTTCATTTGCAG 1630552 30 100.0 37 TCATTTGCAG .............................. AGAGATAAAACAGGATTAAATCCTTTTCTATACAAAA 1630619 30 100.0 36 CTATACAAAA .............................. TTTAGGAATCCTGATGACTTTGCAGACGACTATGAA 1630685 30 100.0 35 CGACTATGAA .............................. TATACTAATATCTTAAAAAAAGAATATAAATATAT 1630750 30 100.0 37 ATAAATATAT .............................. ATACCATTTCGTTATTTTATACCGTCCTGCTGCTACC 1630817 30 100.0 38 TGCTGCTACC .............................. ATGTGAGGAAATACGAAAAGAGGAATACGGCAAAATCA 1630885 30 100.0 37 GGCAAAATCA .............................. TCAAAAAGGGCAAAACATCATGGAAATGGAATTCAAA 1630952 30 100.0 39 GGAATTCAAA .............................. AACAGATAAAACGGTTGCGGTAAGAGAAATTGCAAAAAT 1631021 30 100.0 37 TTGCAAAAAT .............................. ATAACATATCAATAGTAAATAATGAATTTTATAATGC 1631088 30 100.0 39 TTTATAATGC .............................. TCTCTTAAAGCAGATAAAAACTCATCAGCAGGGATTTGT 1631157 30 100.0 37 AGGGATTTGT .............................. AAAGTAAAAACGGGGGCGTATTACATTTTACATCAAA 1631224 30 100.0 38 TTACATCAAA .............................. TCTTTCATTTTTTTAGAGAGGGATGATAATACCATATC 1631292 30 100.0 42 ATACCATATC .............................. AAAAAGAGCTTTAAGGTATTTATACAGAAGTTTAAGAAAAAT 1631364 30 100.0 39 TAAGAAAAAT .............................. TTTTATAGTCAATATCTGAATTTATTAAGTCTTTTAACT 1631433 30 100.0 38 TCTTTTAACT .............................. TTTTTTACAAAGCACCAGTCTAAACAACATACGACCTA 1631501 30 100.0 42 ATACGACCTA .............................. AAAAAGAGCTTTAAGGTATTTATACAGAAGTTTAAGAAAAAT 1631573 30 100.0 39 TAAGAAAAAT .............................. TTTTATAGTCAATATCTGAATTTATTAAGTCTTTTAACT 1631642 30 100.0 38 TCTTTTAACT .............................. TTTTTTACAAAGCACCAGTCTAAACAACATACGACCTA 1631710 30 100.0 37 ATACGACCTA .............................. ATTACACTCTATGACACTCGATGCGACATAGGAAACA 1631777 30 100.0 41 ATAGGAAACA .............................. CATATTTTAACATCTTTTATAGTTATATTCTTTTTGCGTTA 1631848 30 100.0 36 TTTTGCGTTA .............................. ATATACTGGGAAAATGTGGATGGTGTGTATTATATC 1631914 30 100.0 36 GTATTATATC .............................. CAAATATTTTAGTTTCAATACTTTCTGGTGGAATAT 1631980 30 100.0 36 GGTGGAATAT .............................. TTCTTGCATCTTTGCTATACGAAAAAGAGCAAGAAA 1632046 30 100.0 42 GAGCAAGAAA .............................. GAGATGGATATACCTATTCTATATATTTATATATTCTAAATA 1632118 30 100.0 33 ATTCTAAATA .............................. GTTTTTCATTAAGATAGTAAGAAACCTTGAAGG 1632181 30 100.0 42 ACCTTGAAGG .............................. CTCAATAATGAGGTGGGGGTGTTTTGTGGAGATAAGTGTTTT 1632253 30 100.0 42 TAAGTGTTTT .............................. AATGGTTCAAAGGTGTTTGATTTCTTTGATGATTTTAATGAA 1632325 30 100.0 37 TTTTAATGAA .............................. GGACATAAGAAGTTCTTTTCTTTCAATGATAAAATTT 1632392 30 100.0 35 GATAAAATTT .............................. TATTTAGATACTATTTATTGAATACAAAACGAATA 1632457 30 100.0 36 AAAACGAATA .............................. AACTTTTTTAACAATCCACATAACATAATGTCCATT 1632523 30 100.0 39 AATGTCCATT .............................. GAAAATAATTGTGCCTAAAATCATTAAGCGCTTCATTTA 1632592 30 100.0 37 GCTTCATTTA .............................. ACGTGTTCAAATATATTCTAAAATCCTCTTTCTATGA 1632659 30 100.0 CTTTCTATGA .............................. TTGATGGATG ========== ====== ====== ====== ========== ============================== 48 30 37 GTTAAAATCAGACCATTGATGGATGGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.40,-1.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [498,1360] Score: 0.18/0.18 # # Final direction: F [0.37,0.18 Confidence: MEDIUM] >NC_015636 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 206578 29 100.0 39 ATTTTGAACT ............................. AAAATGACAAAACATAGCACATTAGATATGCTGCTAAAT 206646 29 100.0 39 GCTGCTAAAT ............................. AACAGATTGGGAATGATAACATTATCTACAATATAATCA 206714 29 100.0 39 AATATAATCA ............................. ACTCGAAATTAAGCTTTCGGAAGGAGAAACATTTAAATT 206782 29 100.0 39 CATTTAAATT ............................. ATACATAATACACCCTTCGATAGGATTCTTCATTATCTT 206850 29 100.0 39 TCATTATCTT ............................. ATAGTCTCACCTTAACCTAATCCTATATCTACATATTTA 206918 29 100.0 37 TACATATTTA ............................. ATGCGTAGGATACCCCATTTCCAGCAACTTTTCTTTT 206984 29 100.0 38 CTTTTCTTTT ............................. ATGTATTTTTAGTTTCGAAAGGAACTGATTATGATTGG 207051 29 100.0 37 TTATGATTGG ............................. TTCTCTTTTTGAATTTCTTATATTAATCTATAAAAGA 207117 29 100.0 CTATAAAAGA ............................. TCTTTATTTTA ========== ====== ====== ====== ========== ============================= 9 29 38 GTTAAAATCAGACCATTGATGGATGGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.52%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.40,-1.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [75.0-85.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [562,52] Score: 0.18/0.18 # # Final direction: F [0.55,0.27 Confidence: MEDIUM] >NC_015636 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1632792 29 100.0 37 TTTTTTGAAA ............................. TTGTCATTAAAGGAGCTTGTAGATAATAAGTTAATAC 1632858 29 100.0 37 AAGTTAATAC ............................. TTCATGTTTATTATATCTTCTTTTACATAATCGTAGA 1632924 29 100.0 40 TAATCGTAGA ............................. TTATCTTTTACTATATTATAATATATTATACAGCTGTGTA 1632993 29 100.0 38 CAGCTGTGTA ............................. TTGGAGGGCATATTAGATTTTGGTAGTTATTATATTAT 1633060 29 100.0 40 ATTATATTAT ............................. TTTTTTTAATATTTTCATTTTCTTCAACCTCTTTTTTAGT 1633129 29 100.0 40 CTTTTTTAGT ............................. TGTTTGTTCATTAGTCCCATCCGTGACCTTTAAGTATAAA 1633198 29 100.0 38 TAAGTATAAA ............................. TTAATAATATGTTTTTTTTCCTCTCTTTCAGTTATGTG 1633265 29 100.0 36 CAGTTATGTG ............................. TAAACAGACTGAAAAGATTGCAAATATTATTAATGA 1633330 29 100.0 38 TTATTAATGA ............................. TCATTTTATATTAACAACATTGGCATTATTGATGATAG 1633397 29 100.0 38 TTGATGATAG ............................. TCAACATGAGGCGGTTAATAATTTTATAAACACATATA 1633464 29 100.0 45 AACACATATA ............................. TTTAATATATCATCATTTATATTCTTTCTTTTTTGCCCGATATGC 1633538 29 100.0 37 CCCGATATGC ............................. TGGCAACAAGATAGATTTCTCAAACAATTTTACAAAC 1633604 29 100.0 37 TTTTACAAAC ............................. TTCATATTATATAAGATACCCCTCAATGTTGTGGATA 1633670 29 100.0 38 GTTGTGGATA ............................. CTTAAATGTAAGTAAATTTAATGTTAAAATTGATTATA 1633737 29 100.0 37 ATTGATTATA ............................. CTATAATTTTATTTAAAAAATATAATAAAATTAAAAA 1633803 29 100.0 AAATTAAAAA ............................. TATTTATTTG ========== ====== ====== ====== ========== ============================= 16 29 38 GTTAAAATCAGACCATTGATGGATGGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.52%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.40,-1.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [3821,217] Score: 0.18/0.18 # # Final direction: F [0.55,0 Confidence: HIGH] >NC_015636 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 224644 30 100.0 36 TTTTTGAACT .............................. GATGAAGACGATAATGGCGTAACATACGGGGACAGC 224710 30 100.0 36 CGGGGACAGC .............................. CCATATTTTCACCTTATCTTTTTTTACAGCTCAGAG 224776 30 100.0 38 CAGCTCAGAG .............................. TTTTTTGGTATATAGGTAGTATAATGGTATAAAAAATG 224844 30 100.0 36 ATAAAAAATG .............................. CCGTATAAAATTTGAAAAAAGTAAATAATTATTTTT 224910 30 100.0 35 AATTATTTTT .............................. GACCTTGACAGCATTACAGACTCAATAATTGAAGA 224975 30 100.0 TAATTGAAGA .............................. TACATTGATG ========== ====== ====== ====== ========== ============================== 6 30 36 GTTAAAATCAGACCATTGATGGATGGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.40,-1.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [78.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [485,507] Score: 0/0.18 # # Final direction: F [0.64,0 Confidence: HIGH] >NC_015636 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 225510 30 100.0 39 TTTTTGAACT .............................. TTTACTGCTTTTACGCTCGTTATATATCCCTGTTTAGTT 225579 30 100.0 38 CTGTTTAGTT .............................. CAATATCGTGAGCACTCAGGATGTGTCACGATTGACAC 225647 30 100.0 38 CGATTGACAC .............................. CCTCTTTCCTCAACTTGTAATTTACTATCTATACTTAC 225715 30 100.0 41 CTATACTTAC .............................. TGTTTAAGACATCATCTATTGTAAAAGCCTTTCCTTTTCCT 225786 30 100.0 35 TCCTTTTCCT .............................. CCTGAAACTGCAAAAATGGTGGGCGTTTCCCCTCC 225851 30 100.0 38 TTTCCCCTCC .............................. TCTCTAAATCTTTTATGCCTTCTTTTTGCTTATATCGG 225919 30 100.0 37 CTTATATCGG .............................. TTATTTCCAATTTTAATAGTGATATCCTCAATAGATT 225986 30 100.0 35 TCAATAGATT .............................. TCCAATCAAAGAGGTGAGGTTTATGAATATATTAC 226051 30 100.0 36 AATATATTAC .............................. ATACAATGTTAATATATAAGATGTAAATATGGAAAT 226117 30 100.0 36 ATATGGAAAT .............................. CCAATTATCATCTAAATTATTGTTATACTCATATTC 226183 30 100.0 37 ACTCATATTC .............................. AAATTCATAAAATTAGGAGATGGAGATAACATATACT 226250 30 100.0 40 AACATATACT .............................. TAATTATAATGACATGTATCTGGTTATGGGGGCTAATCCT 226320 30 100.0 35 GGCTAATCCT .............................. ACCCCCAATACTTTTTTAACTTGTTTAATTACAAA 226385 30 100.0 37 TAATTACAAA .............................. AAATATAAAGGAGAGGGACATTTCCAAGAGGAAGATA 226452 30 100.0 35 GAGGAAGATA .............................. AATTAAACTGAGAATAAATTATATGGATATACACT 226517 30 100.0 37 GATATACACT .............................. ATTAAAGATATTGAAGAGCCAGAGCCTGCGGAAACTC 226584 30 100.0 37 GCGGAAACTC .............................. ATAAATAAAGGTAATGAGAATATCTATTCGTTTGAAG 226651 30 100.0 35 TCGTTTGAAG .............................. TCTTTTATAATTCTATATGTACCATACCCGGTTGG 226716 30 100.0 38 ACCCGGTTGG .............................. ATAAATGCTGAAAATAGTAAAAAAGATAGGGTATTTTT 226784 30 100.0 37 GGGTATTTTT .............................. TATGATGATGAAGATGGAGGATACGACAGCATTTCAA 226851 30 100.0 37 AGCATTTCAA .............................. AGGTTGTGTATTTAAATTTCTCATGTCGATATACTTC 226918 30 100.0 36 GATATACTTC .............................. TTGTAATGGCCAGTCGATGTCACCCTTGTTGAGGGC 226984 30 100.0 35 TGTTGAGGGC .............................. GATAGTTAAAGAATTTAATGAAGTCTAATTTAGTT 227049 30 100.0 39 TAATTTAGTT .............................. ATCTTTTGTAAATATTCATTATCTTTTTCGTAAATTTTA 227118 30 100.0 37 GTAAATTTTA .............................. AAATGAAAATGAAGAAAATAATCCACAAGAAAATAAT 227185 30 100.0 35 AGAAAATAAT .............................. CTATGTGGTTCATTGAAATAGGTAGCTATACCAAG 227250 30 100.0 37 CTATACCAAG .............................. GTTAAAACAATAGAATTATTTAAAGTCTCATCTAAAT 227317 30 100.0 37 TCATCTAAAT .............................. ATTCTGCCTATAAGTCATAACAGTAGCTAAAGGACTA 227384 30 100.0 35 TAAAGGACTA .............................. AAGTGAGTATTTCATACAAAAATACGGAGGAAGCA 227449 30 100.0 39 GGAGGAAGCA .............................. ATAAAGTCTTCGTTCCAGATAATGGAATTGATATAGCGA 227518 30 100.0 38 GATATAGCGA .............................. AAATTACTATAAAAATGGTGTTATAAACAATATTATGA 227586 30 100.0 38 AATATTATGA .............................. TGCTTATACTACAAAAGATTCTTACCAACTTTCCTTCG 227654 30 100.0 39 CTTTCCTTCG .............................. ATCCATTAATGGGGTGACTTCTTTCTCCCAGTCCCCTAC 227723 30 100.0 36 AGTCCCCTAC .............................. ATTATCTGATGAGGATAAAGAAGAAACACCAAAAGC 227789 30 100.0 38 CACCAAAAGC .............................. CTATCTCACTTTTAGTATCTGAGATATACTGATCAATA 227857 30 100.0 41 CTGATCAATA .............................. TTTTATATCTTGTTCTTCTTCTGTCATTCTTTCACCAAAGA 227928 30 100.0 38 TCACCAAAGA .............................. CCACTTGCATCTGAATCTGATACAATTGTTCCATTAAC 227996 30 100.0 37 TTCCATTAAC .............................. TGCAAAATGTATGTATGAATGCGAACCGCCAGAGCTC 228063 30 100.0 37 GCCAGAGCTC .............................. TTATTAATATCCAACCTCCCAATATAACCTATTGTCT 228130 30 100.0 35 CCTATTGTCT .............................. CTTTTAAATTCTCAATTTCTGTTTTATGCTTAGCT 228195 30 100.0 37 ATGCTTAGCT .............................. TTTGGGGCGCGCCCCTACCGAGCTAAGTATCCATTCC 228262 30 100.0 37 TATCCATTCC .............................. AAAGAGGTATCTTTCAACTCAGGAAGTTCATTTGCAG 228329 30 100.0 39 TCATTTGCAG .............................. TGTCATATATATCTATACTTATTTCATCCCCTATTATAT 228398 30 100.0 42 CCTATTATAT .............................. TAATTTTTAATTTTTAATGTCATTTCTATTTTATTATTAATA 228470 30 100.0 39 ATTATTAATA .............................. TCAATTTTTACTTGGAAATCATTTAGGTCGTAACTGTTT 228539 30 100.0 38 GTAACTGTTT .............................. TCTTGGAATTTCATTTATATGTTCATCTTTAACATATT 228607 30 100.0 38 TTAACATATT .............................. TCTTGGAATTTCATTTATATGTTCATCTTTAACATATT 228675 30 100.0 37 TTAACATATT .............................. TTGGGATTTTATAATAAATGAAATTCGGAGCAATGGC 228742 30 100.0 37 GAGCAATGGC .............................. TCTAATGGTCTGATTATAAATAAAATATAAAAATTAA 228809 30 100.0 36 TAAAAATTAA .............................. CTAAATTTAACATTTACTCCTTCTAAAACAATATAT 228875 30 100.0 36 AACAATATAT .............................. TCATTGATGCAGAAATCTAAAAATTCCTCTAAATCA 228941 30 96.7 35 CTCTAAATCA ...............C.............. TTCTTGAATTTAAAATATTTTATCATTATTTCACC 229006 30 96.7 38 TTATTTCACC .........................A.... TTGTCAAATCTTATCCCTACTTTATTACTGGATATTGG 229074 30 100.0 37 TGGATATTGG .............................. CAAGAACCTATGATGACAATGGAAATGTCGTAATTAA 229141 30 100.0 34 TCGTAATTAA .............................. CACTTTTTTAATTCCGATTGTCAGGCTTCGCCTG 229205 30 100.0 36 GCTTCGCCTG .............................. GATTTCTATATTAGAATTCATCAGTTATATCCCCAC 229271 30 100.0 39 ATATCCCCAC .............................. ATTATTTGTATATCTCCTGAGGAAATGTTTGAGTTAGAT 229340 30 100.0 35 TGAGTTAGAT .............................. CAGTTAAGAAAGTAACTAAACAAGGAAAATACGGG 229405 30 100.0 36 AAAATACGGG .............................. TTCAATGATGCTACAAATAGTTTGTTTGTAGTTAAG 229471 30 100.0 35 TGTAGTTAAG .............................. CAAAAAAACATACAACAAGCGTATCGACAATAACT 229536 30 100.0 37 GACAATAACT .............................. TCCTTTATTTAATCAATAAGGTATTTTACATTGAGTT 229603 30 100.0 37 ACATTGAGTT .............................. TTTTTTATATCATAACCCTCAAAATTCCAGTAATCCT 229670 30 100.0 37 CAGTAATCCT .............................. TTTTGTAAGGGTTATTGATTTTGAATTTGTTACATAA 229737 30 100.0 36 TGTTACATAA .............................. GCATTTTTATCACCCTTTTATTTTATTTTTTTTATT 229803 30 100.0 36 TTTTTTTATT .............................. TATCTATTTATTAACTCCGTTGGGTTTTGAATAACT 229869 30 100.0 35 TTGAATAACT .............................. TCAATAATATTTCTTGTTGGAATATTGACTTCCTT 229934 30 100.0 39 TGACTTCCTT .............................. CAATGATTTAATCCTTTCCGTATGGTTCTTCCCCTCCAC 230003 30 100.0 36 TCCCCTCCAC .............................. TACTTGGAGGAACTATTCCCGCAAGTGCTAATGATG 230069 30 100.0 37 GCTAATGATG .............................. TCGATACGAGATTAAATTTAGCAACACCACCATCATA 230136 30 100.0 37 CACCATCATA .............................. TGATAATTATTATATCTATATATTTGTATGGGATTGC 230203 30 100.0 36 ATGGGATTGC .............................. TAGTATAAATACCTGCGGCTACACCAGCCCCTACTT 230269 30 100.0 36 GCCCCTACTT .............................. CATTTGTTTTAATAAAATAAAAATAAAATATTATGT 230335 30 100.0 38 AATATTATGT .............................. GTGAGATTAAAAACTTCAAGAGCCCTGAGGTATCTAAC 230403 30 100.0 36 GGTATCTAAC .............................. AATTCTGAAAGGTTAGGAATGATAACATTATCAATA 230469 30 100.0 37 ATTATCAATA .............................. TTTTGTGCTGGCGTGATACCATAATGTGATTTAAGAA 230536 30 100.0 36 GATTTAAGAA .............................. TAGTTCAAGTTCAAAAACATACAATCCAAATACAAC 230602 30 100.0 37 CAAATACAAC .............................. ATAAATTTATTGGAATAAAAATTTTCTGAGTCATTTT 230669 30 100.0 38 GAGTCATTTT .............................. TAATTTACAATACCAGAGTTTATCATATTTACATTATC 230737 30 100.0 37 TTACATTATC .............................. CCAATAACACATATAAAAAAAGCAATATATAAAATAA 230804 30 100.0 35 TATAAAATAA .............................. TTATATACTATGAGCGATAAGTATAATTTAGAAGT 230869 30 100.0 ATTTAGAAGT .............................. GCTGTATTTA ========== ====== ====== ====== ========== ============================== 81 30 36 GTTAAAATCAGACCATTGATGGATGGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.40,-1.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [71.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [153,165] Score: 0/0.18 # # Final direction: F [0.78,0.27 Confidence: MEDIUM] >NC_015660 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1972138 30 96.7 37 TGCTTGGATA ............T................. TTAGATGAAAAGGAGAAGGCATATATCAGAGAATTAA 1972205 30 100.0 38 AGAGAATTAA .............................. CGTGGGAAACTCATCGGATTTTATGCATATGCCAAGTT 1972273 30 100.0 36 ATGCCAAGTT .............................. TCAATGTCATAGAGCTTTTCTGCGACCACATCCATG 1972339 30 100.0 37 CACATCCATG .............................. GGACGGCTGCGCGTTTCATGGCACCGGAGAAACCGCC 1972406 30 100.0 36 AGAAACCGCC .............................. GGAATCCGCATTTCTTTTTCATAGCAACGAGTGAGA 1972472 30 100.0 35 ACGAGTGAGA .............................. TTTATATTTCAACCGGACCCCTCCCGTGTTATACT 1972537 30 100.0 35 GTGTTATACT .............................. GGGATTGTTTAAAAGAGGTGATATATATTGTTATC 1972602 30 100.0 38 TATTGTTATC .............................. ACTCACCCCCCGCGTGCTTATTAATCACTATAATCAAG 1972670 30 100.0 35 TATAATCAAG .............................. GAAAAGAAGTGTTATTTTAGCAGTCGGGGGCTTAT 1972735 30 100.0 37 GGGGGCTTAT .............................. TTGAACGGCTAATCAGTTTTCGCTTTTGTTCAACAGG 1972802 30 100.0 37 GTTCAACAGG .............................. TTCTAACAACCTAATAAAATCCTCATCCGAAAAAACA 1972869 30 100.0 CGAAAAAACA .............................. CCCTAAAAAA ========== ====== ====== ====== ========== ============================== 12 30 36 GTTTCAATTCCTCATAGGTAAGATAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [2716,1331] Score: 0.18/0.18 # # Final direction: R [0.18,5.78 Confidence: HIGH] >NC_015660 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 251638 30 100.0 37 NNNNNNNNNN .............................. TACTTTGAGATGCCTTTTAGTGATCCAAAAACAAGGT 251705 30 100.0 37 NNNNNNNNNN .............................. GTTGTTCAATCTCCTGATATTTTTGCTCGAGTTCCGC 251772 30 100.0 39 NNNNNNNNNN .............................. TCGAAAGAACCTAAAAAGCGTAAAACGAACCATTACACC 251841 30 100.0 37 NNNNNNNNNN .............................. TGTTTCTTGTACCATTTCGCAAAAGCAACAGAATCCA 251908 30 100.0 38 NNNNNNNNNN .............................. GCTCTAGCGTTCCGGCTTTGTTGCGGCCGAGGACTAGT 251976 30 100.0 36 NNNNNNNNNN .............................. TTCTACATCGTCGGCTATGACTTGCGAATATTTTCG 252042 30 100.0 38 NNNNNNNNNN .............................. TCAAAAATTTTTGGAATCGAGCGAAGCGGGGAAACCGT 252110 30 100.0 39 NNNNNNNNNN .............................. TGGAAGGTAACGAGGTAAGGGATTGGCTTGGATTGTCAC 252179 30 100.0 37 NNNNNNNNNN .............................. AAATTAATCCCCGCGATAGTGATGCGGTCAATCTGTA 252246 30 100.0 37 NNNNNNNNNN .............................. CTGCAAAGCGAGCCGTCCGACTGTCGCAGGGCAAACC 252313 30 100.0 36 NNNNNNNNNN .............................. TTTTTTTTGAAAAAATCGCAAAAAATTTAAAAATAG 252379 30 100.0 37 NNNNNNNNNN .............................. TAACAAGCCGGAGGACCCGGAAAACGAACGCATAGCG 252446 30 100.0 38 NNNNNNNNNN .............................. CCTTCATTCGTTTTTACATGTAAAACGGCTTGTTTTGC 252514 30 100.0 36 NNNNNNNNNN .............................. ATACTAGACTTTCTTTGTATTGTGCGTATGGCTCGT 252580 30 100.0 35 NNNNNNNNNN .............................. AAAAATGCGGCCGATCAATTCATTGCTTCTCACTA 252645 30 100.0 36 NNNNNNNNNN .............................. TAATAATTGTAAAATCTACTTTAATACTGGTGCGCC 252711 30 100.0 39 NNNNNNNNNN .............................. TGTAACAGTAACGATTACACGGCAAACAAAAGCTGTATC 252780 30 100.0 35 NNNNNNNNNN .............................. TTGTATCGGTGTTTGATGGTGTGAAACCATCACTC 252845 30 100.0 36 NNNNNNNNNN .............................. ACAATAGAATTCGATGTACCGTTTGATGATGATATG 252911 30 100.0 38 NNNNNNNNNN .............................. CACGGGCGGTGACGTTGAAGCCGCGCTCCAAGAAATCG 252979 30 100.0 37 NNNNNNNNNN .............................. TCAACAAACGCTACTACATCAACATGACCATAACGCT 253046 30 100.0 36 NNNNNNNNNN .............................. ATCTTTTAGTTTTTGCATCGCCAACACGTGGCGTAA 253112 30 100.0 36 NNNNNNNNNN .............................. TTTCCGTAAAGACCCTAACAGCAATATTGGAAAACT 253178 30 100.0 39 NNNNNNNNNN .............................. ATCGACAAGCACCATCCCTACCTTTCAGATAACGAACAG 253247 30 100.0 37 NNNNNNNNNN .............................. GCCAAATTTTTTATCTATCCAAGAGTAGCACCTTTCC 253314 30 100.0 37 NNNNNNNNNN .............................. CGCAACAAAAAATAACCATCTTCAAGCGGCTGGCTCT 253381 30 100.0 38 NNNNNNNNNN .............................. ATGTTTTGTGCGTGTAAAAGATCGTCAATTGTAGAGAA 253449 30 100.0 38 NNNNNNNNNN .............................. TGATTCATCAGTAGACCTTGCAGCCATTGAAAATGAAG 253517 30 100.0 37 NNNNNNNNNN .............................. ACCTTATATATTCCATCAAGGCTTGCAGAAGCGTCTA 253584 30 100.0 38 NNNNNNNNNN .............................. ATTATTATCCAAATAGCATCATCATGCTATACACCGGA 253652 30 100.0 38 NNNNNNNNNN .............................. TTTTTGGGATCGCTCCCCTTATCGACAGCCGGAATATT 253720 30 100.0 40 NNNNNNNNNN .............................. CTGTTCCATCGCCGAATTTCACTTTTGTAAATTGCAATGC 253790 30 100.0 38 NNNNNNNNNN .............................. GTTGCTACAAGCTCAATGATCCAGCTTGGGCAATTGAT 253858 30 100.0 36 NNNNNNNNNN .............................. ATCGGATTGAACGATGGCGTGATTCACGTAAACCGT 253924 30 100.0 37 NNNNNNNNNN .............................. TAGCAATACGGACATTACGCCTGTTGTATCGACCGTC 253991 30 100.0 38 NNNNNNNNNN .............................. TCCGACGGATACGCAAAATTGTAAGGGATAAGCTCCGG 254059 30 100.0 36 NNNNNNNNNN .............................. ACCGCTTCATATACCGACGGAGGGTTTTCGAGGTGA 254125 30 100.0 35 NNNNNNNNNN .............................. TGACAATCCGTTAATTTTTGATATTTGTCATGCAT 254190 30 100.0 35 NNNNNNNNNN .............................. AAGCCTTTTTCTGCGAAAACCACGCGATAGGCTTT 254255 30 100.0 36 NNNNNNNNNN .............................. TCCGGTCGCTGTTTTCAATTCGATGGTGTATTTTGT 254321 30 100.0 35 NNNNNNNNNN .............................. TTGGAGGAATATGCTGCATTGACATCATCGGCCAA 254386 30 100.0 37 NNNNNNNNNN .............................. TTCTGACTTTCAAGAAGTTGAAGCGTCTTTTGTGTCG 254453 30 100.0 36 NNNNNNNNNN .............................. CCGCTGCGGCATTGTATGGGCATTACAACGGTGTAG 254519 30 100.0 36 NNNNNNNNNN .............................. AATCGCTTGAGCGTATACCGCCAAACTCGAACCACA 254585 30 100.0 36 NNNNNNNNNN .............................. TTTGCAATCGCTGCACGTTCTTCTAACGATAAGTAA 254651 30 100.0 38 NNNNNNNNNN .............................. TCGACATCAGGAATTTCGTCGATAAATACTTTGAATAT 254719 30 100.0 35 NNNNNNNNNN .............................. GTAATTCATAATCGTTCCCCATCAACTCTGTAAGA 254784 30 100.0 35 NNNNNNNNNN .............................. TGAGAACATAAGCGAATTTTCCATTCGAGAATATT 254849 30 100.0 39 NNNNNNNNNN .............................. AACAAGCGCAAAGGTTGAACATTTTCCTTTTTCAAGCGT 254918 30 100.0 36 NNNNNNNNNN .............................. GCATTTGATCACGGCGACATTGAAAACGCACAAATT 254984 30 100.0 38 NNNNNNNNNN .............................. TCTGAAGGAGAGTATGCCGATTATCGCGTAGAAGAAAT 255052 30 100.0 36 NNNNNNNNNN .............................. ACGCTAAATAGAATCAATCGGCCATAACGACCGCAA 255118 30 100.0 39 NNNNNNNNNN .............................T AACCAATCGGCTGGTGGCTTCTCACCCGGCCCCCATCCA 255187 30 100.0 35 NNNNNNNNNN .............................T TCCGTTGTCAGGTGATAGTTGAATTTGGTATTGTA 255252 30 100.0 40 NNNNNNNNNN .............................. ATGACTAACGAATCATAAATATCGCTAAACATGTAGTCAG 255322 30 100.0 35 NNNNNNNNNN ...................A.......... CCTACCTCGGTCGGACTTTCCGGTTTTACTCGAAT 255387 30 100.0 1 NNNNNNNNNN .........C..........A.G....... NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 57 30 36 GTTTGTATCTTACCTATGAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.00,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [71.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [263,367] Score: 0/0.18 # # Final direction: F [6.05,0 Confidence: HIGH] >NC_015660 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1497828 29 100.0 35 TGTCGCGCAA ............................. GCGCCAACAGGCTCGCTATAAACTTACCTTTATTG 1497892 29 100.0 36 ACCTTTATTG ............................. ACGTTTGCGCATCGCAAAAGAACTCGGCATGACGGA 1497957 29 100.0 36 GCATGACGGA ............................. TTGGGTCATCGGATTCATCTTCGGATTGGGAGTTCG 1498022 29 100.0 35 TGGGAGTTCG ............................. ACGAAGTTGATTGACTTCTTCATTGGTCCAGATGA 1498086 29 100.0 36 GTCCAGATGA ............................. AGTTAACGAAGGCTGACTTGCAGGTTGTTAATCAGT 1498151 29 100.0 37 GTTAATCAGT ............................. GAGGTGAATATACCACTTCCGATATTGATTTGATTTT 1498217 29 100.0 39 ATTTGATTTT ............................. CCTTTATGTTCTGCATGTTCTCCCTAAACGTCAGCGTAA 1498285 29 100.0 37 GTCAGCGTAA ............................. ATGACTGCTGTTGATTGGAAAGCAGGCATTCCAAATG 1498351 29 100.0 35 ATTCCAAATG ............................. TTTACACCTCCTATTGTTCTATTGTTCGGCTCGGA 1498415 29 100.0 35 TCGGCTCGGA ............................. AAAGAAGCTTTGCAAGAATATATTGGAAAAATGGA 1498479 29 100.0 39 GAAAAATGGA ............................. AGGCTTTTTCTCTAGCAGCTGCAACTTGCTCTTCTGGAA 1498547 29 100.0 39 TCTTCTGGAA ............................. TTAAAGATGACTACATGAAAATTTCAAAAGAGCGTTTTG 1498615 29 100.0 36 GAGCGTTTTG ............................. TATGATCCTCCCTTTTCTGTACAATACCTTAAACTT 1498680 29 100.0 35 CCTTAAACTT ............................. AAAGCGGATGCGTTTTATTGTGTTACATTTCCCGC 1498744 29 100.0 35 CATTTCCCGC ............................. ATGATAGCAACAGTTTTTCCGGAAAGAATATCTAG 1498808 29 100.0 36 GAATATCTAG ............................. GTTTCCGGATCCATATCTGGCACCCGTTTAATGATA 1498873 29 100.0 37 TTTAATGATA ............................. ATGATCCCGATTGCTTTTTATCCTCGCTATCGATATC 1498939 29 100.0 38 TATCGATATC ............................. TCGTAAACTTCAATGACGTTAATTGATTTGTATTGACC 1499006 29 100.0 36 TGTATTGACC ............................. CTCCAAGTGAAGGGGGTGGATATTGATGCTTGATCG 1499071 29 100.0 35 TGCTTGATCG ............................. ATTCAAGCATAGCTACTTCGTCTGCACCGTTTTCA 1499135 29 100.0 35 ACCGTTTTCA ............................. ACGATAAACGCACACAACGCCGACATCGTAACGCC 1499199 29 100.0 35 TCGTAACGCC ............................. ACAAATGATGGTTTGATGCCCAAAGACGCTTTAGC 1499263 29 100.0 37 ACGCTTTAGC ............................. CTGGTATGCTTGCCGAGCGAAGCGAGGGGAGCGGCAG 1499329 29 100.0 39 GGAGCGGCAG ............................. AAAGCACAAGCATTCAATCAGAGTTGACGGCTGTCAATC 1499397 29 100.0 35 GCTGTCAATC ............................. TAGTTAAATTACCTTTGTGCCAAATATCGTTTCCA 1499461 29 100.0 36 ATCGTTTCCA ............................. GGGATTAAACATCTACAACAGTAACAGGGATATCAA 1499526 29 100.0 38 GGGATATCAA ............................. TCATGATTTTCATCATAGATAATAGCTAGAATTTCTTC 1499593 29 100.0 37 GAATTTCTTC ............................. TGTCTACTATGGGAAAAGTAGATTTGATGCATTGCGG 1499659 29 100.0 37 TGCATTGCGG ............................. GAATAATCTATCACTTTTTCTTTCACATATACCCGTC 1499725 29 96.6 TATACCCGTC .........................C... TTATCTTTCA ========== ====== ====== ====== ========== ============================= 30 29 36 GTTTTATCTGAACGTAGTGGGATATAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.52%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [339,504] Score: 0/0.18 # # Final direction: F [0.41,0.27 Confidence: LOW] >NC_015656 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================== ====== 3841901 22 100.0 39 NNNNNNNNNN ...................... TGGAGGAGTGGGCGTGGCGTACCAACCGCAAGCGGCAGT 3841962 22 100.0 39 NNNNNNNNNN ...............A...... GCCAGCATCACCTACACCGCCGTCACCGGCCTCGGCAGT 3842023 22 100.0 40 NNNNNNNNNN ...................... AGCGCGCACAGCCACGGATCCCACGGTTCCCGGGGCAGTC 3842085 22 100.0 39 NNNNNNNNNN ..........T...T....... GTCACCGTGGGCCGGCTCGCCGCCGCCAAGGCGCCGTCC 3842146 22 100.0 1 NNNNNNNNNN ..T.......T........A.. NNNNNNNNNN ========== ====== ====== ====== ========== ====================== 5 22 39 CCCGCGCGCACGCGCGGCATGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [2,1] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.30,-2.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [35.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [297,300] Score: 0/0.18 # # Final direction: F [1.42,0 Confidence: HIGH] >NC_015660 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1992534 29 100.0 35 AGATTACTTC ............................. AAGATGGGAAAAGGAATAGGGGTAGAGTATTTAAA 1992598 29 100.0 35 AGTATTTAAA ............................. TGCGTCGTATGGGTCAAAAAACTCTACTTCCCTCG 1992662 29 100.0 37 ACTTCCCTCG ............................. CGAAACGTCTGTTTTTCTTTATTTGGTTTTACTAATG 1992728 29 100.0 36 TTTACTAATG ............................. TACCTTCGTGAACGTGAGCGAGTCGGTGTTTTTCGT 1992793 29 100.0 36 TGTTTTTCGT ............................. AAAAACCGCTATTATTATGAGCTGAACCTGATAGTT 1992858 29 100.0 36 CCTGATAGTT ............................. CGAAACGAACGACAAAATCGAATTTGTGTTTACGAT 1992923 29 100.0 38 TGTTTACGAT ............................. TCTTTGTAAGTGCGTTACATCGCGCTTGGCCATTTCGA 1992990 29 100.0 38 GCCATTTCGA ............................. CGTTCGAAAACCACCCGATTTTGCGCCGCGTCTTCCAT 1993057 29 100.0 36 CGTCTTCCAT ............................. CGCGAAACCAAACGGTGATTTGTCGTCGCTAATGAT 1993122 29 100.0 36 CGCTAATGAT ............................. TGCGGTTTCGACGTAAAACTGATTGAGAACGTCGAG 1993187 29 100.0 36 GAACGTCGAG ............................. CCTTTCGGGGCGAACGTTGTGGATTGGCGGAGCGAA 1993252 29 100.0 37 GCGGAGCGAA ............................. CATATCTTCGGAGAATAAATATCCCGGAGAGGTGAGG 1993318 29 100.0 36 AGAGGTGAGG ............................. ACGAAAACCCCGAGCTATTAGAGGTGAGCGAATGAT 1993383 29 100.0 36 AGCGAATGAT ............................. AATGGCAAGACGAGATTGTGAACGAATGGAGGGCGT 1993448 29 100.0 37 TGGAGGGCGT ............................. TCTTGCCATCGAACGTTTTGTCTTCGTGTACGAAAGT 1993514 29 100.0 36 GTACGAAAGT ............................. GGTATAGGGAAGCTAAAGAACTTGAACCGATTTTAT 1993579 29 100.0 38 CCGATTTTAT ............................. CGTATGACGATCTCGGCGCTTGGTTCGTATGTGATCGG 1993646 29 100.0 37 ATGTGATCGG ............................. CCGCCATCCGGTCGTCAACTGTTCGGGTTACCGGTTG 1993712 29 100.0 36 TTACCGGTTG ............................. CTTTTTGGCAAAATCTACGAACCTCTGAAACTTTCA 1993777 29 100.0 35 GAAACTTTCA ............................. GTTCAGCCGGAATAAGTTTCGGTACCTTCATGTAT 1993841 29 100.0 36 CTTCATGTAT ............................. CTTATATCTTCGCTATTAAAGTAGTCATGCCATCTG 1993906 29 100.0 36 ATGCCATCTG ............................. AGCGTAATGAACTTTGTTTTCTCATCCCATGCACCT 1993971 29 100.0 38 CCATGCACCT ............................. CAGTCGCGACGCCGCGCGCTATATGTCGCGACTGCAAA 1994038 29 100.0 36 CGACTGCAAA ............................. CACGTCTTCCCTGTTCTTCTCCTTCTCCTTATCCCG 1994103 29 100.0 36 CCTTATCCCG ............................. CGAAAGGTTCGATATGAAGGTGGATTTGAATCCGAA 1994168 29 100.0 38 TGAATCCGAA ............................. TTGCGGAGCCCGGATTTGCTCGGTTTGCGTGTAGTGTT 1994235 29 100.0 38 GTGTAGTGTT ............................. ATATCTCATCCAACTATACTCACCCCCCGCGTGCTTAT 1994302 29 100.0 35 GCGTGCTTAT ............................. TTTCTGCAAGATTCGGATAAAGATATTGGTTTGGC 1994366 29 100.0 38 TTGGTTTGGC ............................. TATGAACATCCCGAGACGGGTGTCAAGATTGGGGTCAA 1994433 29 100.0 38 TTGGGGTCAA ............................. GATGCTCCGGAATGGCTGGATATTGATCATATTACGGG 1994500 29 100.0 36 ATATTACGGG ............................. TCCGCAACGCCGCCTAACAAGTTACGCGCGAAAATA 1994565 29 100.0 37 CGCGAAAATA ............................. CAACGAAATGACGGATAGAGCCAAGCAATTGTTTGGA 1994631 29 100.0 35 ATTGTTTGGA ............................. TCGAAAAAGTAGATATTCGCGGTACGCTCATGATT 1994695 29 100.0 36 GCTCATGATT ............................. TCCGCTGTCACCTGTTCAATGTCCGTGTATACTTTG 1994760 29 100.0 38 GTATACTTTG ............................. TGTAACTTTGTTTTGGCTCATAGATTTCTAACCTCCTA 1994827 29 100.0 38 TAACCTCCTA ............................. CGGTCGCGGTGAAAAAACAGGTCGAAATGCAAGAAGAA 1994894 29 100.0 38 GCAAGAAGAA ............................. GTGAGGGGAAGAATCGATGGAAGCACCTATACAAAGAT 1994961 29 100.0 35 ATACAAAGAT ............................. CCATATACTGATTGGCGGCTAGTGAGTGTTGATGG 1995025 29 100.0 37 GTGTTGATGG ............................. CCTTTTCCGCCTACCCCCGGGACCCAGTCGGGAATTT 1995091 29 100.0 35 TCGGGAATTT ............................. TGTATTCACTTCCTTTCCTCTTTTGAATACTATAT 1995155 29 100.0 AATACTATAT ............................. CCCAATAAAT ========== ====== ====== ====== ========== ============================= 41 29 36 GTTTCAATTCCTTATAGGTAAGATAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.41%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [1926,2021] Score: 0/0.18 # # Final direction: R [0,4.87 Confidence: HIGH] >NC_015660 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 3459790 30 100.0 65 NNNNNNNNNN .GGGAC.A..T......C.......A.... AGGCAAAATCGGTCCATAAGATATAAACATGCACGCGACACGAAAGCTGTCAAGTCGCAGACCAC 3459885 30 100.0 38 NNNNNNNNNN .............................. CCATGTGTATCACCTTCGAGTTTCTGGCGTTCTGATTG 3459953 30 100.0 35 NNNNNNNNNN .............................. AAAATGCCTAACCAAAGGGGCGCATTATTAAGTTT 3460018 30 100.0 36 NNNNNNNNNN .............................. TCTTACATGTTCAAAACGTTATTAACTGACGTAATT 3460084 30 100.0 36 NNNNNNNNNN .............................. TCTTACATGTTCAAAACGTTATTAACTGACGTAATT 3460150 30 100.0 37 NNNNNNNNNN .............................. CTTTTAGCTTCATATTGCTTGAGCCACGAAGAGAAGT 3460217 30 100.0 35 NNNNNNNNNN .............................. CTGGTCGGGATTGCATCTGTGATTCCGTATCCCGA 3460282 30 100.0 38 NNNNNNNNNN .............................. TGGACGCTTTGCAAGTTTCAAAATTGAACCAATTTCAT 3460350 30 100.0 38 NNNNNNNNNN .............................. GGTCGGCGCGGCGAACATGGATTCATGCGAATATACGA 3460418 30 100.0 35 NNNNNNNNNN .............................. CCCATCGCTTTAGCAACTGGCGAAGCTTCACCTAA 3460483 30 100.0 37 NNNNNNNNNN .............................. ACAAGCGGAAAAAGTTTAACGTTATCTTTTTTTTCGT 3460550 30 100.0 38 NNNNNNNNNN .............................. GCATTTATTTGTATATGGGATTCCGACACCTGAACAAT 3460618 30 100.0 38 NNNNNNNNNN .............................. GGATATACTGGCACAAGCAGTCCGTTTATTGCTCTTTA 3460686 30 100.0 38 NNNNNNNNNN .............................. GGAACTTTTTGAATGAATCCCAATGTAGCAAAAAGATT 3460754 30 100.0 37 NNNNNNNNNN .............................. TTTGATTTTCGACGAGAAAGCTTTCTCGGTCTTTTAA 3460821 30 100.0 37 NNNNNNNNNN .............................. TGTGAATCCGTAACTCTTTCGACAACTGGTTTTGCAA 3460888 30 100.0 36 NNNNNNNNNN .............................. CTTCTTGTGACCATTCAAACCGTTGTCGAGAGATTT 3460954 30 100.0 36 NNNNNNNNNN .............................. GTCGTCACCGCATAACCGAGTCGGAACCGCATCGCA 3461020 30 100.0 39 NNNNNNNNNN .............................. GCTTAATATCGTCGCCATACGTTCACCGCCCGATTTGAT 3461089 30 100.0 38 NNNNNNNNNN .............................. GGGAAAATGGTGTATCAACTGAAATGGCAGCGTAGAGT 3461157 30 100.0 38 NNNNNNNNNN .............................. GAGAGTGTCGATATCAATGCAGTGCAATCGACACTCGC 3461225 30 100.0 37 NNNNNNNNNN .............................. CTTTACGGTTAGCATATTTACCAAGCATGTTTTTCGG 3461292 30 100.0 36 NNNNNNNNNN .............................. AAAGTATTTTTACACGATTAACACCACTAGGAACAG 3461358 30 100.0 38 NNNNNNNNNN .............................. GGCTCGGCTTTCGGTTCATCGACGCGCTTGACGTCCGC 3461426 30 100.0 39 NNNNNNNNNN .............................. ACTCCACAAGGTCATTTACCGTCAGTTCGTTCATTTCCA 3461495 30 100.0 39 NNNNNNNNNN .............................. ACTCCACAAGGTCATTTACCGTCAGTTCGTTCATTTCCA 3461564 30 100.0 36 NNNNNNNNNN .............................. TCTAGTATGTTTTCGATTCTTTCAGCGAGCCACAAA 3461630 30 100.0 39 NNNNNNNNNN .............................. TGAGTTGGGCAGGAAACTCCTCATTGAGAGCATCCGCCC 3461699 30 100.0 36 NNNNNNNNNN .............................. CCCAAACAAAACTTCCCATTTTACAAATGCAAAAAA 3461765 30 100.0 35 NNNNNNNNNN .............................. TCTGTTGTGTTCACAAGTGTGTCGAACGCTTCAAA 3461830 30 100.0 36 NNNNNNNNNN .............................. GGGTTACTTTTTTGTTTTTTATTCTCCAATTATAAA 3461896 30 100.0 34 NNNNNNNNNN .............................. GGGTTACTTTTTGTTTTTATTCTCCAATTATAAA 3461960 30 100.0 37 NNNNNNNNNN .............................. TTGACAAATTCAATTATTTTGAGCTGGCCGGTTTGGA 3462027 30 100.0 37 NNNNNNNNNN .............................. CAAGTCGCCAATCAAATCTGTTTTAAATTCCTGCTTA 3462094 30 100.0 36 NNNNNNNNNN .............................. CTAATCGAAAGTTTGGAAAATGACTTCCAGACTCTT 3462160 30 100.0 35 NNNNNNNNNN .............................. CAGTATGTTGGTTCTGATACGAAAAGAGGGACACT 3462225 30 100.0 35 NNNNNNNNNN .............................. TGTCTCCGAATTGAACGTATTCGCGATTTTTCCAC 3462290 30 100.0 36 NNNNNNNNNN .............................. ATTCATCGATCAACCTCCCAATGTTACTTTTAAGCA 3462356 30 100.0 37 NNNNNNNNNN .............................. GTCAATTCCCCGATCGCATTGAGTTTATATATTTCCT 3462423 30 100.0 36 NNNNNNNNNN .............................. GTAAGAATCGTTGTTTCCGGGAAGATTTTTTCCCAA 3462489 30 100.0 36 NNNNNNNNNN .............................. AGAGGGAGCGATTGAAACAATAAAAAAACAAGTCAT 3462555 30 100.0 37 NNNNNNNNNN .............................. AAAAATGGCAACCGATCGCAGAACGAAACGGGATCAA 3462622 30 100.0 35 NNNNNNNNNN .............................. GGCATTATGGGCTAAACCCGATATTGAAACTGTGA 3462687 30 100.0 38 NNNNNNNNNN .............................. AAGATTCATCATATCCCCTCCCGTTCAAACTTCTCTTG 3462755 30 100.0 38 NNNNNNNNNN .............................. AGCTTCCAGTCCTTTGTCGCAGCCGCCCACATACCGCC 3462823 30 100.0 39 NNNNNNNNNN .............................. ACTAGCTAATTGTTGGCGTGGCTTCAAATATTGGAGTTA 3462892 30 100.0 38 NNNNNNNNNN .............................. GCTCATATTTGCCTTATTTTGCGTTCTAGATGACTTCC 3462960 30 100.0 38 NNNNNNNNNN .............................. AAGCCTGGAGGGCATTCCCCGTACGGATATAAATTCGA 3463028 30 100.0 35 NNNNNNNNNN .............................. CGAGCAGAACGATTCGGACCGCATTTCTGGAAAGA 3463093 30 100.0 37 NNNNNNNNNN .............................. TGGGTTTTTCATTCGGATTACACAGGATTCAAAGAAG 3463160 30 100.0 37 NNNNNNNNNN .............................. GCACGCGCGGCCGCCCAGCCGAGCCTCGATCTTCCCT 3463227 30 100.0 37 NNNNNNNNNN .............................. TCCAGATGTTCAAAATTACGTGAAAAAAGAAAAAGCA 3463294 30 100.0 36 NNNNNNNNNN .............................. CCCTGTATCGGGAAGAGAAAGACCTTGGAAAACGCA 3463360 30 100.0 38 NNNNNNNNNN .............................. GTTTATCCAAAGAAAGAAATCAAAAGAGAAACGGGAAT 3463428 30 100.0 36 NNNNNNNNNN .............................. TTTTTGTTTTTCCCCACTTGTCGTTGTACGTGTCGT 3463494 30 100.0 38 NNNNNNNNNN .............................. GTTTTCATGCTTGTGTTGTATATAAAGATTAATCTAAA 3463562 30 100.0 36 NNNNNNNNNN .............................. AGCGTCTGGGAGCGTGTGAAGTGTATAGGAAAAGGA 3463628 30 100.0 36 NNNNNNNNNN .............................. ATGGTGAAACGAAAAATATTGTGAGAAGAGTCTTGA 3463694 30 100.0 35 NNNNNNNNNN .............................. TATAGCTTTGCTGGGCTTTTTGATGAATTCAAGCG 3463759 30 100.0 42 NNNNNNNNNN .............................. CTGGAATGGTCAATTCGCCGCCGGATACTGCACGCAGATTTT 3463831 30 100.0 37 NNNNNNNNNN .............................. GGGACAAGTGCATCTGACATTTTTTCAGCTGCTTTTT 3463898 30 100.0 38 NNNNNNNNNN .............................. GAAACGCCCTTTGCCGCGGAACGCCATTTGATCTTCAA 3463966 30 100.0 36 NNNNNNNNNN .............................. CAAGTTTTGAATGAGAACAGCCGCTACTTTTGTTAT 3464032 30 100.0 38 NNNNNNNNNN .............................. GCTATTGCGGATGTTCAAAATAAAATTGGAATTTTAAA 3464100 30 100.0 38 NNNNNNNNNN .............................. TATATTTCACCCCTTTTTCACGAGTATTATAAGTTATA 3464168 30 100.0 37 NNNNNNNNNN .............................. CTATCCCGTTTTCTTGCAGAAAATCTTGGCCAAAAAA 3464235 30 100.0 37 NNNNNNNNNN .............................. CGATCACACCATACCGTTTTCCTTGTGCATCGACTTC 3464302 30 100.0 36 NNNNNNNNNN .............................. AGATATTGAAGGTTACGAAGGGCTTTATCAAGTGAG 3464368 30 100.0 36 NNNNNNNNNN .............................. ATGTTCAGAATCATCGATTTATTTTGGAAAATACAC 3464434 30 100.0 36 NNNNNNNNNN .............................. CGCATCGCTTGGATTGTCAATGAATAGGTTCTCGGT 3464500 30 100.0 36 NNNNNNNNNN .............................. GCGCGACGGGACCCCCGAACCACATCACGCTTTCAA 3464566 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 72 30 37 GTTTCAATTCCTCATAGGTAAGATACAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [56.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [209,184] Score: 0/0.18 # # Final direction: R [0,5.55 Confidence: HIGH] >NC_015672 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1011494 29 100.0 37 NNNNNNNNNN T...CCTC..................... AGGCTAGAACACTGGCACACAAACTTAACATTCCATT 1011560 29 100.0 36 NNNNNNNNNN ............................. CTGCTGTGTTTAAACCTTGTGCCATATCATACAAAT 1011625 29 100.0 36 NNNNNNNNNN ............................. TAACATTATATTTCCATTATTAACTTGAACGCTATA 1011690 29 100.0 38 NNNNNNNNNN ............................. TCAAGATTTGCCCGTAAAGGTCTGCATCTTAACATTAA 1011757 29 100.0 36 NNNNNNNNNN ............................. CACTTGAGATATTTGAATATTATTTTTTATTAGAAG 1011822 29 100.0 36 NNNNNNNNNN ............................. AACTCGTTCGTTGATTGTATAATCAACGTGAATAAT 1011887 29 100.0 38 NNNNNNNNNN ............................. TCAAGATTTGCCCGTAAAGGTCTGCATCTTAACATTAA 1011954 29 100.0 35 NNNNNNNNNN ............................. CACTTGAGATATTTGAATATTATTTTTATTAGAAG 1012018 29 100.0 36 NNNNNNNNNN ............................. ACATCACCGATCATCTACATGTACTTGCTCTTTATG 1012083 29 100.0 36 NNNNNNNNNN ............................. TCGCAAATCCATTGTCCATTCCGGTATTTGGAGACG 1012148 29 100.0 36 NNNNNNNNNN ............................. CCCTCCACTATTCTTTGTGTACCGTCTTCTGTAGTA 1012213 29 100.0 36 NNNNNNNNNN ............................. CCAGTAGCGAACTGTTTTAACAATATTAACTTCACT 1012278 29 100.0 36 NNNNNNNNNN ............................. TTTTTTAGCGACTGCAATATGCCGAGCCCCTCCGTT 1012343 29 100.0 35 NNNNNNNNNN ............................. TTCTATGAGCTCCCGTTACAATTATATTCTTAAAC 1012407 29 100.0 36 NNNNNNNNNN ............................. CTCTGCTGTATCTGGTACATATACTGAAACATCAAG 1012472 29 100.0 36 NNNNNNNNNN ............................. AAACTGTCAATCTCTTGTCCACGTATATTAAATACG 1012537 29 100.0 36 NNNNNNNNNN ............................. GAGTTGGGAGAATATAAAACATTAGGTACTTATGAG 1012602 29 100.0 36 NNNNNNNNNN ............................. TTTTTCTCAAGATTTTGTGCGCTTCTGAGTGTTGCC 1012667 29 100.0 36 NNNNNNNNNN ............................. TGCCTTGTAAATCTTCTTCTGCTTCCGCCCTTTAAT 1012732 29 100.0 36 NNNNNNNNNN ............................. CACTTTGTACGATATCGAATAATGCAGGATTCCGTT 1012797 29 100.0 36 NNNNNNNNNN ............................. TTCTCGTCTCACTTTTCTAGCCTCGCTCCATGTAAT 1012862 29 100.0 36 NNNNNNNNNN ............................. CTGCTTGTGCTATTCTATCCCCTACATTTATTTTAA 1012927 29 100.0 36 NNNNNNNNNN ............................. GCTGTCTTCTATAAAGCAGAACAAATGCCCGAAATG 1012992 29 100.0 36 NNNNNNNNNN ............................. TTTATGTAAACAATTGACTAAAATTGCTGAAAGAGT 1013057 29 100.0 36 NNNNNNNNNN ............................. GGAACACGTTTCATTGCGTGTTCCTGAATCAAGCGA 1013122 29 100.0 36 NNNNNNNNNN ............................. GTTGAAGGAATTTTCGGTAAACTTGACGGCATTTTT 1013187 29 100.0 36 NNNNNNNNNN ............................. AACATATTATGACACAAAAACCGAAGTAAGTTCAGA 1013252 29 100.0 36 NNNNNNNNNN ............................. CGGGAGGAAGCCAAAAGCGATTCCTTTTTCCGCAAA 1013317 29 100.0 36 NNNNNNNNNN ............................. TTTCTCACCTGCATATTTAATATAGTTCGTTTCATT 1013382 29 100.0 36 NNNNNNNNNN ............................. TTGCTACTGCTGACATAGTTCCTTTAATGCTCACTA 1013447 29 100.0 36 NNNNNNNNNN ............................. TACAGAAGCGTCTCTAATACCGTATTGCTTTCTTAT 1013512 29 100.0 36 NNNNNNNNNN ............................. TATCTTGCAATGACCCTAATGTACTTCAACAACAAT 1013577 29 100.0 36 NNNNNNNNNN ............................. ACTGCTAACGCTGAATATGAAGATACTGCTTTTATT 1013642 29 100.0 36 NNNNNNNNNN ............................. ACTCTCTTATTTTCTTCGGGACTTTTTTCAAGTCCT 1013707 29 100.0 36 NNNNNNNNNN ............................. GTCTGAAATAGTAAAACTTATAAGGCCATTATCATA 1013772 29 100.0 36 NNNNNNNNNN ............................. GCTATCTACCGTCCCTACAGATGATAAGTCAAGCTG 1013837 29 100.0 35 NNNNNNNNNN ............................. AGGCGTGCTGCCTTCCAAAGTGCTACTAAGAACGC 1013901 29 100.0 36 NNNNNNNNNN ............................. ATTTTGTTAGGTCTGGAGATAAGGTAGAAGCTTTTA 1013966 29 100.0 36 NNNNNNNNNN ............................. AATACCGTTTATCGTTACATCTATACTATCCAATTG 1014031 29 100.0 36 NNNNNNNNNN ............................. TGTTCATCTTGCCGTTGTTTACAGAATTCTGCAACT 1014096 29 100.0 36 NNNNNNNNNN ............................. AACAGCACCGACAATGCCTACCTCTCTAACATCAGC 1014161 29 100.0 36 NNNNNNNNNN ............................. CAGAGGACAGAAAGATGAAATACGTAGCAAGGGACT 1014226 29 100.0 36 NNNNNNNNNN ............................. TTCTTGAGCATTATTAAAGCGTGTGCCTCTGAAATT 1014291 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 44 29 36 CTTTAAATCCCAGAATTGGGAACTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.52%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.50,-6.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [60.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [333,137] Score: 0.18/0.18 # # Final direction: R [0.55,0.68 Confidence: LOW] >NC_015672 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1428433 36 61.1 40 AGCTTGCTGG --------------...................... TGAAGATTAATGACCCGAAGCAAATCCAGATTTTAGAAGA 1428509 36 100.0 38 TTTTAGAAGA .................................... CATAGGCTCATTAAAGGGCATGTAAGCATGGAGCTTGT 1428583 36 100.0 38 TGGAGCTTGT .................................... GCAAAATACAACTGAAAACACAAGTAAAGTAAAACTAA 1428657 36 100.0 38 GTAAAACTAA .................................... AAAAGGGTCAATGATTTCTTATTTAAAAAGATACAGCT 1428731 36 100.0 37 AGATACAGCT .................................... GCGCCGCCGTAAGTTTTTTAACGGCGGATATAAGGCT 1428804 36 100.0 41 ATATAAGGCT .................................... AGTTAAAAGCTGTTTTCACTCTCCTGAAATGGGAGAGTGAA 1428881 36 100.0 39 GGAGAGTGAA .................................... CAAAAATCTGCGTGAGCCAGAGATAGAAGAAGGCAGTAC 1428956 36 100.0 40 AAGGCAGTAC .................................... AAGATATGTATAACGTAGCCTTCGAACTGTACTGTGAGAA 1429032 36 100.0 38 ACTGTGAGAA .................................... GAAAATTGTCATGGCAATTCTATTTTTTGGCGGTCTAG 1429106 36 100.0 40 GGCGGTCTAG .................................... AAAATTTAGTATTAACAACAAGTGGAAACAAACTCTATGT 1429182 36 100.0 40 AACTCTATGT .................................... ACCATTGTTCAACACACTATTCAATGCTGTGACAAAGAAC 1429258 36 100.0 40 GACAAAGAAC .................................... AAAATATGGCGCGAGGTTTGCAGACTTGCAGCCTCACGCT 1429334 36 100.0 36 GCCTCACGCT .................................... ATTAATTTTCTTATCAGGGGGGGAAGAAAAAATAAA 1429406 36 100.0 AAAAAATAAA .................................... AAAAAGGTAA ========== ====== ====== ====== ========== ==================================== 14 36 38 GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.89%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-2.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [58.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [196,1417] Score: 0.18/0.18 # # Final direction: R [0,1.23 Confidence: HIGH] >NC_015672 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================================= ====== 1429541 39 100.0 36 GGGCACCCGG ....................................... GATGTTGCAAAGCAGCCGGTTAAGCTCCGGCTGCTA 1429616 39 94.9 34 CCGGCTGCTA T....................................C. TAAGTGCATCTGAATTTTGGGAGCGCGCAGTAAA 1429689 39 100.0 35 GCGCAGTAAA ....................................... ATATTACAAAATGTTATATTAATAATAATATTGAT 1429763 39 97.4 TAATATTGAT .....................................A. AATCAAATA ========== ====== ====== ====== ========== ======================================= 4 39 35 AGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATTA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-2.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [2-1] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [1304,1057] Score: 0/0.18 # # Final direction: R [0,0.64 Confidence: HIGH] >NC_015672 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1429911 36 100.0 38 GCCCGGGTGC .................................... CTTAAAAGCTTTATGGAACAAAATGGCCTGGCGGAAAT 1429985 36 100.0 39 TGGCGGAAAT .................................... AGATTAAAAGATTTATATAAAAAGTACGGCGCTGAGTAT 1430060 36 100.0 39 CGCTGAGTAT .................................... TACTTCCGCGTAGAAGTACTTTAAAAAAATAAAAACCGT 1430135 36 100.0 36 TAAAAACCGT .................................... CGGCGGGTATAAAGCAGTCCTCAGATACTTTGAGGA 1430207 36 100.0 38 ACTTTGAGGA .................................... ATAATAAGCGCCTTATCCAATCAAAAAATTTTTCTTTT 1430281 36 100.0 39 TTTTTCTTTT .................................... TCCCGGGGAGAAAAGAGACATAGCAAAGCAGCCGGTTAA 1430356 36 100.0 37 AGCCGGTTAA .................................... AAGCAATAAGCTTACATAAAAATTCTTTCTCTCCTTT 1430429 36 100.0 36 TCTCTCCTTT .................................... AGATTGTTCTACTCTTACCTTTATTCGTCTTTATGA 1430501 36 100.0 39 GTCTTTATGA .................................... AAAATGAGAAATGAAATAATTGTAAATAAGATTTCAGAA 1430576 36 100.0 38 GATTTCAGAA .................................... GGAAGGGGCAACAACCCTTCCGGAGGGTTTTAAAATGA 1430650 36 100.0 TTTAAAATGA .................................... AGCCCCTATT ========== ====== ====== ====== ========== ==================================== 11 36 37 GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.89%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-2.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [45.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1674,173] Score: 0.18/0.18 # # Final direction: R [0.18,0.64 Confidence: MEDIUM] >NC_015672 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================== ====== 1709833 26 42.3 49 AGCTTGCTGG --------------..A......... GGATTCCAATGGTATAGATAATAAAAAAATTGTCCATGTATTTGATATA 1709908 26 92.3 47 ATTTGATATA ..............T.A......... TAATTCCAATAATAAACTATCCAAGAACTTTTGGAATTGAGATAGAA 1709981 26 100.0 49 TGAGATAGAA .......................... GAATTCCAATTGGTTCAGTACAAAAATAGCCATAAAAAAGCCATTAAAA 1710056 26 100.0 49 GCCATTAAAA .......................... GAATTCCAATATCCGACCAAATTCCATGGTCGGAGCTCTCTTCAGCTAT 1710131 26 100.0 CTTCAGCTAT .......................... GAATTCCAAT ========== ====== ====== ====== ========== ========================== 5 26 48 GTCGTAATCCCTTCAAGTCAGGTCAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.85%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [50.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [680,351] Score: 0/0.18 # # Final direction: R [0,0.68 Confidence: HIGH] >NC_015672 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1710487 36 58.3 37 GCTTGCTGGA ---------------..................... GTTGAAGCACTCGGCGCAGTTCTATCTTTTGAGCAGA 1710560 36 100.0 39 TTTGAGCAGA .................................... AGAGAGATTTCTCCATTTCCTAAATTTAATACAGTTGAT 1710635 36 100.0 41 TACAGTTGAT .................................... CTTCCGGAGGGTTTTAGATTTAAGTACCTCAAAGTCGAGGT 1710712 36 100.0 39 AAGTCGAGGT .................................... ATATGTCGCCCAGCTCATGGGCGGCAGGTTGCCGGAAGG 1710787 36 100.0 TGCCGGAAGG .................................... TACACAACT ========== ====== ====== ====== ========== ==================================== 5 36 39 GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.80,-2.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [1334,2140] Score: 0/0.18 # # Final direction: R [0.37,0.68 Confidence: LOW] >NC_015672 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1711205 36 100.0 38 TTTCTCTTCT .................................... AGTGATGCGGGGTGGGTACGTCGGTTTGCATATCGAAA 1711279 36 100.0 38 CATATCGAAA .................................... ACATCAAGAACAGAAAGCGCTGTTTGAAATGGCAGCTC 1711353 36 97.2 39 ATGGCAGCTC ...........................A........ CAGGTTGCCGGAAGGGGCAACAACCCTTCCGGAGGGTTT 1711428 36 91.7 39 CGGAGGGTTT ..............A.G..........A........ ACAGAAGCAATTTCATTATATAAAAATTCTCTCTCTAAA 1711503 36 91.7 38 TCTCTCTAAA ..............A.G..........A........ ACAAACTTATAAAAGGATATGTGAATCTGGAACACGTT 1711577 36 100.0 38 GGAACACGTT .................................... GATGTAAGAGTATATTACGATGAGACAAGACAATTATC 1711651 36 100.0 40 GACAATTATC .................................... AAAACCACAAACGGTATGATCTTAAGGGTCGATGACAGAC 1711727 36 100.0 40 GATGACAGAC .................................... AGGAACTAAGCATGCAATAAACACTGCTGAAAGATTAGGT 1711803 36 100.0 40 AAGATTAGGT .................................... AATTATGGATGAAACTAATGTCCATCCTTCCTGATTATGA 1711879 36 100.0 36 CTGATTATGA .................................... AAAATGTATCTATTGAATGCGTTCAGCTTGCAGATG 1711951 36 100.0 38 CTTGCAGATG .................................... ACAGAAGCGTATCATTTAAGTAAAAATTCTTTCTCTTA 1712025 36 100.0 38 CTTTCTCTTA .................................... TGAGAGGGATAGAAATACTAAGATTTATAGGCGAGAAT 1712099 36 100.0 41 AGGCGAGAAT .................................... ATAAAAAAGGAGGAAAAAATGTACCTTTTAAATGCATTCAG 1712176 36 100.0 36 ATGCATTCAG .................................... CCTTTTAAATGCATTCAGCCTACAGATGATGGATGA 1712248 36 100.0 35 TGATGGATGA .................................... AACAAATGTGGAAAGGATTTCGACAAATATAGAAA 1712319 36 100.0 38 AATATAGAAA .................................... GTCGCCCAGTTGATGGGTGGCAGGTTACCGGAAGGGGC 1712393 36 100.0 37 CGGAAGGGGC .................................... GGTAAAACTGTCCAAGCTCTAGCCTGGCTTCAATTGC 1712466 36 100.0 41 CTTCAATTGC .................................... CCGCCCGGGTGCTCGGAGTAGCGCCAAATAGAATCAACGTC 1712543 36 100.0 38 AATCAACGTC .................................... GCCGGAAGGGAGCACAACCCTTCCGGAGGGTTACAAAA 1712617 36 100.0 GGTTACAAAA .................................... AGTCCCTATT ========== ====== ====== ====== ========== ==================================== 20 36 38 GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.80,-2.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [503,310] Score: 0/0.18 # # Final direction: R [0.37,0.41 Confidence: LOW] >NC_015673 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2456087 28 100.0 34 NNNNNNNNNN .A.......T.................. ACATCAACCCCATCAGGAAGCTCAACCTCAAACT 2456149 28 100.0 33 NNNNNNNNNN ............................ ATCATCATCTACCGCACGCATGGTGAGTGCCAG 2456210 28 100.0 33 NNNNNNNNNN ............................ ACCCCAGACGGCACGCGTGAACACCCCTACGAG 2456271 28 100.0 33 NNNNNNNNNN ............................ GACAACTTGTCTTGGTCTGGGGCTTTCGGCAGG 2456332 28 100.0 33 NNNNNNNNNN ............................ ATAACAAGGCTGGGGGTTATGCTTCCGGTGGCA 2456393 28 100.0 33 NNNNNNNNNN ............................ CTGGCGCGTTCACGTTTGACACATCCGCCCTCC 2456454 28 100.0 33 NNNNNNNNNN ............................ GCGTACTAGTGGCGTGTGGCTGCGATGGTGTCG 2456515 28 100.0 33 NNNNNNNNNN ............................ CGGCTTTGGCCGTTGTTCCATGCCATGGGTGTG 2456576 28 100.0 33 NNNNNNNNNN ............................ TTGCTAACCAGTTTCGACCTTCTCTAGTGATGG 2456637 28 100.0 28 NNNNNNNNNN ............................ TTTCGGCGTTCCTTTTCGTCTTAAACCG 2456693 28 100.0 33 NNNNNNNNNN ............................ GGCCCACTCGCTGGGCGCGGGTTCACCGACTGG 2456754 28 100.0 33 NNNNNNNNNN ............................ ACGAGTGATGAGAACATGCGCAGGTTGGACGCA 2456815 28 100.0 33 NNNNNNNNNN ............................ TGCCATGGTGCGAGGTGCTTGAGCTCGTCTTCG 2456876 28 100.0 33 NNNNNNNNNN ............................ TGCTGTGGTTCATGCTCATGACCTTCGGCGCAC 2456937 28 100.0 33 NNNNNNNNNN ............................ TTCGTTGAGGATGTGTTTGGGCTGGGGTTTGCC 2456998 28 100.0 34 NNNNNNNNNN ............................ GGCGTGGAGGCCGCCGTCGTAGACGATCAACCCG 2457060 28 100.0 33 NNNNNNNNNN ............................ CTTTCGCAAACATCCGAATAGGCCTGAGGGTGC 2457121 28 100.0 33 NNNNNNNNNN ............................ TTATGTCGAGTTTCCAGCGCCCGGTTGGGGTTG 2457182 28 100.0 33 NNNNNNNNNN ............................ CCAGCTCTCATGCTCATCCTCGTGGGGTTTGCC 2457243 28 100.0 33 NNNNNNNNNN ............................ GGGAAAACTGGACGGAGCGACAGGAGCATATGG 2457304 28 100.0 33 NNNNNNNNNN ....................A....... CGAGGGTCAGCCACCCACACCTGCAACTGCACC 2457365 28 100.0 33 NNNNNNNNNN ............................ TTTCGGCTCCAGTTCCTTATTCTTCGCTTCGAG 2457426 28 100.0 33 NNNNNNNNNN ............................ TTATTCACCGCGAGCTTCAGGCTTGGGTCGCCG 2457487 28 100.0 33 NNNNNNNNNN ............................ AGCAGCTGAGCTACAAAGCCTTCGACGTCTTTC 2457548 28 100.0 33 NNNNNNNNNN ............................ AAATAGAGTTCCTTGCCTTCAAAGGTCCCGGTG 2457609 28 100.0 33 NNNNNNNNNN ............................ TTCCGCTTCAGGATTTCCAGGTGGGCGACCTGG 2457670 28 100.0 33 NNNNNNNNNN ............................ AATGTCCCCGCCCTCGTTAAAGCGCAGACCGCG 2457731 28 100.0 33 NNNNNNNNNN ............................ TAGGCACGTGGGTGCCTATGCAGGATTTTCATG 2457792 28 100.0 33 NNNNNNNNNN ............................ GGCACGACGACGACCGCCTGATAGCCCTTAACG 2457853 28 100.0 33 NNNNNNNNNN ............................ CTGGCGCTATTCGGGATACGGTGAACGGTTATG 2457914 28 100.0 33 NNNNNNNNNN ............................ CGACATGAGCTGCAGCATGTCGTCGCCCTGCAG 2457975 28 100.0 33 NNNNNNNNNN ............................ GAAACGTCTGGAAGACAAGGATGCGCCGGGCCC 2458036 28 100.0 33 NNNNNNNNNN ............................ TTGCAATGGTCCAGCTCGCTAACGCTTGGGTTG 2458097 28 100.0 33 NNNNNNNNNN ............................ TCGCTCGTGTCCGCTCCGCTAATGTCCACAGTC 2458158 28 100.0 33 NNNNNNNNNN ............................ CTCATGCCAGAAGTCGGCTACGGCGGTTCCACG 2458219 28 100.0 33 NNNNNNNNNN ............................ GCGAGATTCTGCCCGGTGCTGCTAGCCCTGATG 2458280 28 100.0 33 NNNNNNNNNN ............................ GACGCTGTTCTGACCACATTTTCGGCTGTGGTG 2458341 28 100.0 33 NNNNNNNNNN ............................ GACTCATTCGTGTAAATCCCGACACTAGGGAAC 2458402 28 100.0 33 NNNNNNNNNN ............................ GGTTGATGGTTATGTGTCGTCGGCGCAGCAGGC 2458463 28 100.0 33 NNNNNNNNNN ............................ TGTGGCTGCGATTGGAGCCAATGTAGGCAGGCG 2458524 28 100.0 33 NNNNNNNNNN ............................ AGCTCCATCCCGGTGGACGGCCTTTCGCTTTCA 2458585 28 100.0 22 NNNNNNNNNN ............................ TAGCGCCGGCTTAACTCTATCG 2458635 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 43 28 32 GGCTCATCCCCGCTCACGCGGGGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [4,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [40.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [737,2371] Score: 0.18/0.18 # # Final direction: R [0.64,0.96 Confidence: LOW] >NC_015673 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2458763 28 100.0 33 GTGGGGGTAG ............................ ATTTCGAAGACGCTGCTCATGCACTCTGCCATC 2458824 28 100.0 33 CTCTGCCATC ............................ TGAAGCATGTTTCAACAGTTCTATCGCAGGCTG 2458885 28 100.0 33 TCGCAGGCTG ............................ GATGTTTCTCACTGCTGATTCGCCGGTGGGGTC 2458946 28 100.0 33 CGGTGGGGTC ............................ CAATCGGCGCATCATTGCGTGAGCAATACCGTG 2459007 28 100.0 33 CAATACCGTG ............................ CCGTCGATTTCAACGATGTCAATATCGCCATGG 2459068 28 100.0 33 ATCGCCATGG ............................ AATCTCCTCAAGTATTTGAATCTTTGCGTGATG 2459129 28 100.0 33 TTGCGTGATG ............................ GCCTATCCATGCTCTGTGTTGCTCGCTCATGTC 2459190 28 100.0 33 CGCTCATGTC ............................ GCACCACTCCGATGCCAAACGCCAACATTGAAA 2459251 28 100.0 33 AACATTGAAA ............................ CTACTGACCGATCTGAAGATTCTGTTTCCCCGC 2459312 28 100.0 33 GTTTCCCCGC ............................ CCCGCAAGGATTCAAGATCAGACGTTTCATTAA 2459373 28 100.0 33 GTTTCATTAA ............................ CCATACGGCGATCCATGCTGATCCTGCGACAGC 2459434 28 100.0 33 CTGCGACAGC ............................ TGGCATCGGAGTGGTGCAATATGGACACAGCGG 2459495 28 100.0 33 GACACAGCGG ............................ TACTTCAGTTCAGGGTCGGCTACTACGGTGCCG 2459556 28 100.0 33 TACGGTGCCG ............................ TTTTTGCGGCGTTTGTTGGTTGCGACGCGTAGG 2459617 28 100.0 GACGCGTAGG ............................ TCCACACAGG ========== ====== ====== ====== ========== ============================ 15 28 33 GGCTCATCCCCGCTCACGCGGGGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [4,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [30.0-31.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [3413,1389] Score: 0.18/0.18 # # Final direction: F [0.55,0.37 Confidence: LOW] >NC_015673 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2459795 28 100.0 33 GGACGCACCG ............................ GGGGAAGGGGTGGACGTTCGATTCTGGTTCTGG 2459856 28 100.0 34 CTGGTTCTGG ............................ TAAGGCTATTCGCTCGCCACGGTACGCCCGGCAG 2459918 28 100.0 33 CGCCCGGCAG ............................ TTCATTGAGGGCGCCGTGGGCCTTACCGAGCTT 2459979 28 100.0 34 TACCGAGCTT ............................ TACCCAGCCGACCGCAAGCGCAAATCACCAGGGC 2460041 28 100.0 33 TCACCAGGGC ............................ TTTCCTCGCTGCGGATCGTGATTTTGATTTAGC 2460102 28 100.0 33 TTGATTTAGC ............................ TGTGGAATGAGGCGAACTTCATCGACTCCGGGG 2460163 28 100.0 33 GACTCCGGGG ............................ AGGCTATCTATGGAATTGTCTAGCCAGCACCGG 2460224 28 100.0 33 CCAGCACCGG ............................ TCGCGTTCGGGCATGTCTCGACAATTGCGGGCG 2460285 28 100.0 33 ATTGCGGGCG ............................ TTCGCTCGCTCACTCACTGGATACGGCTGCCAG 2460346 28 100.0 33 CGGCTGCCAG ............................ CTGGTCTGTCTAGTCTGGTTAGTCTGTGCTCAG 2460407 28 100.0 33 CTGTGCTCAG ............................ TAGCTAGGTCATTGGAAACCAGCGAGTAGTGAT 2460468 28 100.0 33 GAGTAGTGAT ............................ GAGTCGTGGCTGGAATATGACCATGCGCACCTG 2460529 28 100.0 TGCGCACCTG ............................ CCCTTGCTGA ========== ====== ====== ====== ========== ============================ 13 28 33 GGCTCATCCCCGCTCACGCGGGGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [4,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [28.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [4445,477] Score: 0.18/0.18 # # Final direction: R [0.55,0.64 Confidence: LOW] >NC_015676 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================= ====== 1562663 17 100.0 64 TCTCTCGAGT ................. ATATAATCTAGGTGTTACTGTAAGTAATTCATATGCAACAGGTGAAGTGAACGGAACTAATAAA 1562744 17 94.1 61 AACTAATAAA ...........G..... AGATAATTCTGAAACCATTGATAATTCATATTCATCAGGAACAGTTGAAGGTAATGATTAT 1562822 17 100.0 64 TAATGATTAT ................. TCGGAACATTGGAGTGACTATCACAGATTCCTATTCCACAGGTGATGTGATCGGTAACAATCAA 1562903 17 100.0 64 TAACAATCAA ................. TTATAATCAGGACGAGAATATTACAGATTCTTACTCCACGGGTGATGTAACCGGTAACAATAAA 1562984 17 100.0 64 TAACAATAAA ................. TCGGAACATTGGATTGACTATCATAAACTCACATTCCACAGGTGAAGTGACCGGTAACAATCAA 1563065 17 100.0 TAACAATCAA ................. TGAAAATTGGG ========== ====== ====== ====== ========== ================= 6 17 63 GTAGGTGGACTTGTTGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [2629,1605] Score: 0/0.18 # # Final direction: R [0,0.78 Confidence: HIGH] >NC_015676 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1678080 29 100.0 32 NNNNNNNNNN G.A.......................... CAGAAGGGATTCAGGCCGTTCGGGGGAATACG 1678141 29 100.0 32 NNNNNNNNNN ............................. TTCAAAGAATTCTATAGGGTTAAAAACAAGTG 1678202 29 100.0 32 NNNNNNNNNN A............................ ATCTGTTGAATATGTTACTGTTCGATTTACTG 1678263 29 100.0 32 NNNNNNNNNN ............................. ATGGTCTGTGGAGATGATGGTGAGAGGAAGGT 1678324 29 100.0 32 NNNNNNNNNN ............................. AGTGCCAGCACTCTCATCCACTTTCCAATACC 1678385 29 100.0 32 NNNNNNNNNN ............................. CCTATTTTAATCTCATCTTTCATTATTAAAAC 1678446 29 100.0 32 NNNNNNNNNN ............................. TCGATCAGACAGGGACGGATGCAAGTTCTAAC 1678507 29 100.0 34 NNNNNNNNNN T............................ ATCACCCCTAAGCGTTTTAGTACTCCCTGGTAAA 1678570 29 100.0 32 NNNNNNNNNN A............................ TGGGACAGACTTTACACAGTTCAACCCGTTAA 1678631 29 100.0 33 NNNNNNNNNN ............................. GTTGAAGGATTAACTCCGAATCTATCCGCTACA 1678693 29 100.0 32 NNNNNNNNNN T............................ TTTTTCCTCAACACAAAATAACCACATGGGGT 1678754 29 100.0 32 NNNNNNNNNN ............................. ATTATCATAATCATTGAACCAAACCGTTTTAA 1678815 29 100.0 32 NNNNNNNNNN ............................. GGTCCTGAATTCGCAGGTATCATATATTGCAT 1678876 29 100.0 32 NNNNNNNNNN ............................. ATCCCGCACATAAACCCGTTGTCGCACCCGCT 1678937 29 100.0 32 NNNNNNNNNN ............................. GATTGATGCTATCGATTTCTTCCCCGTTGTGT 1678998 29 100.0 32 NNNNNNNNNN ............................. TCTTTATCCCCCATGGGTGCATAATGTGACCA 1679059 29 100.0 32 NNNNNNNNNN ............................. TCTTTCAGCAAGCCTTCTTTTTGCTTCTGAAT 1679120 29 100.0 32 NNNNNNNNNN ............................. ATATTGCTTCAGCAATATCTAAACCAATATTT 1679181 29 100.0 32 NNNNNNNNNN ............................. TGGTAAAGCAAGGTTTTGTCCAAACTTTAGTC 1679242 29 100.0 32 NNNNNNNNNN ............................. GAATTACTCATATCGGTATCAAATAAATTATA 1679303 29 100.0 32 NNNNNNNNNN ............................. TGCATCACCATACCACATCATGATATGCCCGA 1679364 29 100.0 32 NNNNNNNNNN ............................. ATCTAAACTCAAACCTACTCGTTACGATTAAA 1679425 29 100.0 33 NNNNNNNNNN ............................. TTCGCATTATATCAGAATTTGATTTACCTGTAG 1679487 29 100.0 32 NNNNNNNNNN ............................. TACCCATCATCAGTGAATCCGTCATCTGGTAC 1679548 29 100.0 32 NNNNNNNNNN T............................ GTAAGTATATTCGAAGATATCGACAGGGTAAA 1679609 29 100.0 32 NNNNNNNNNN ............................. CCGTCACCGCTTTTTTGTGGCAAAAACTTTAC 1679670 29 100.0 32 NNNNNNNNNN A............................ TGGTTCTAAGTTGTCCCATAGTACTAAAAAGC 1679731 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 28 29 32 CGGTTCATCCCCACGTGTGTGGGGAACTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [159,1085] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_015680 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 556584 30 100.0 39 AAACCCACCT .............................. TCCGGGCTAACCTCGTAAGTCTGGACGTTCGTCTCGGGG 556653 30 100.0 38 CGTCTCGGGG .............................. TCCCCTGCTCCGGCTTCTTCATCGTGAAGAAGAACATC 556721 30 100.0 37 GAAGAACATC .............................. CCCCGGCTCGGAGCTCAAATCAGGAAAAGGTTCAAAT 556788 30 100.0 36 AGGTTCAAAT .............................. TTCTAATAATCACGAGTACGACGTCTTCGTCGTCAT 556854 30 100.0 37 TCGTCGTCAT .............................. TCGTTTTCTTCATTATTATCTATGTCATTACACCTAT 556921 30 100.0 37 TTACACCTAT .............................. CGGGGCGCGAGCCGGCGGGAAATCCGCCCCCGCGGGG 556988 30 100.0 38 CCCCGCGGGG .............................. CTGGATCTCTCTGAATTCTTCTGGATCACTAGTAACCT 557056 30 100.0 36 CTAGTAACCT .............................. TACTGAGAAGCATTACTATCGTGAACTCTGGGCTGT 557122 30 100.0 46 TCTGGGCTGT .............................. TCGGGCTTCCGCCCCAGACTGGCCTGTGGACGTAAATCACGACCTC 557198 30 100.0 38 TCACGACCTC .............................. GCAGTAGTTTGTGCTGCTCGTTCATAACTACATATAGT 557266 30 100.0 39 TACATATAGT .............................. GTTGGGGCGGAGATAATAGACTTCGAGGGCGCCGCGAGC 557335 30 100.0 35 CGCCGCGAGC .............................. TCATTCGCAGTGTATAAAAACACGTGGTTGGCGGT 557400 30 100.0 43 GGTTGGCGGT .............................. AAGAAGAAGGGTGTCGAGGATGTCGTTTTCGACGTGTATCTCG 557473 30 100.0 38 GTGTATCTCG .............................. CTTTGAAATTCTCGTAGAGGCCATTGGGGTCCCGGGGT 557541 30 100.0 35 GTCCCGGGGT .............................. ACGTACTCTACAAAGATCTCAAATAACTCCTCCTC 557606 30 100.0 ACTCCTCCTC .............................. CTTCTTTCAA ========== ====== ====== ====== ========== ============================== 16 30 38 GTTCCAATAAGACTCAAAGAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-0.60,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [541,734] Score: 0/0.18 # # Final direction: F [5.27,0.37 Confidence: HIGH] >NC_015680 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 41222 30 100.0 38 CCTTTATAAG .............................. CCTCAACAACAAGCACAAACTATTCGTCGTCTACAATT 41290 30 100.0 40 GTCTACAATT .............................. GCGCAAATAGTTCTCCCCACAGAGCTCGAGCTCTCCACGT 41360 30 100.0 35 CTCTCCACGT .............................. GAGGGCGGGGCTGGCGTGGAGGATGAACGCGGTCG 41425 30 100.0 38 AACGCGGTCG .............................. AAAGGAAATAGTTAGTTTCTTTACGGAAGAACCAGAAG 41493 30 100.0 42 GAACCAGAAG .............................. TTTGGTACGTAAGCGCGATGACGGCAAGTACGAGCTGATAGA 41565 30 100.0 38 AGCTGATAGA .............................. GGTGATACTAGAGGACGAGGAGGAGTTATTCGAGCTTC 41633 30 100.0 37 TTCGAGCTTC .............................. AAATGTAAAAATGAGGGGGCTTCAGATCCACCCCACG 41700 30 100.0 37 CCACCCCACG .............................. TTCAACGTTTCTGGTTGTTATCTCGTCTGGAGCAGCC 41767 30 100.0 36 TGGAGCAGCC .............................. ACTCTCACACGGACACACACAAAATCCTGGTTACAT 41833 30 100.0 37 CTGGTTACAT .............................. TCCAGCCTGTTGGCCTGGGTGAAGGAGGGGAAGAAGG 41900 30 100.0 38 GGGAAGAAGG .............................. CGTTGTCCCAATAGAGCACTACAACGAGAAGAAGAAGC 41968 30 100.0 37 AAGAAGAAGC .............................. AGCATCCATACGGAAGTTGCGTTAAGCTGTACTATGA 42035 30 100.0 45 TGTACTATGA .............................. CCGGCCGGGCCCAAATTTCCTTCAGCTCAGCCGTCCGGCTTTTGC 42110 30 100.0 38 CGGCTTTTGC .............................. TATCCATTGCCCCCCACCTTTTTTATGATAATTCTATC 42178 30 100.0 TAATTCTATC .............................. AGGTGGGTTT ========== ====== ====== ====== ========== ============================== 15 30 38 CTTTCAATTCTCTTTGAGTCTTATTGGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.30,-0.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [117,499] Score: 0.18/0.18 # # Final direction: R [0.37,5.18 Confidence: HIGH] >NC_015680 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 693109 30 100.0 36 AAACCCACCT .............................. AACTTAGTCGGCGATAGGTATGACATAGTTAAGAAA 693175 30 100.0 37 AGTTAAGAAA .............................. CGGGGCCTGATGCGGGCGGGATCCGCCCCGCCGGCCT 693242 30 100.0 42 CCGCCGGCCT .............................. CAAACAACTGCACCCACGACCGCGCCAGGAGGGCCGGCTAAG 693314 30 100.0 36 GCCGGCTAAG .............................. TTCTAATAATCACGAGTACGACGTCTTCGTCGTCAT 693380 30 100.0 37 TCGTCGTCAT .............................. TCGTTTTCTTCATTATTATCTATGTCATTACACCTAT 693447 30 100.0 37 TTACACCTAT .............................. CGGGGCGCGAGCCGGCGGGAAATCCGCCCCCGCGGGG 693514 30 100.0 38 CCCCGCGGGG .............................. CTGGATCTCTCTGAATTCTTCTGGATCACTAGTAACCT 693582 30 100.0 36 CTAGTAACCT .............................. GGATTTTCTGGAGTACTTTTGGAGTTCCTGGATCGT 693648 30 100.0 36 CCTGGATCGT .............................. CTCTGCCTTCACTTCCACCACCCCCAAGCCTTCTTC 693714 30 100.0 36 AGCCTTCTTC .............................. GATGACGGCAACAACCTCGCCCGCCCTGTTCTTCGG 693780 30 100.0 37 TGTTCTTCGG .............................. TGCTGGAATGTGGGGCGTCGGCGGTAGGATCAAGTGG 693847 30 100.0 38 GATCAAGTGG .............................. TTGACGAGATCATCGACGGTCTCGAGAAGGGGGAGGCT 693915 30 100.0 42 GGGGGAGGCT .............................. CGGAACCAGGCGAGGAGGGCCTGCTTCTTTGGGCTCCACGCC 693987 30 100.0 37 GCTCCACGCC .............................. GGGGAGGCGAGAAGGCTAGGTTTCTTCATAGCATCAG 694054 30 100.0 37 ATAGCATCAG .............................. CCGCCCTCCCTCGTCCTCATCTCAACCGCCCCACTGC 694121 30 100.0 37 GCCCCACTGC .............................. TTGATAATCTCTGGATCCTCGAAGCCGGCCTTGAGCA 694188 30 100.0 38 GCCTTGAGCA .............................. ACTCTCTCCCAAAGTAACAACTGCCAGCGCTGGTCTCT 694256 30 100.0 36 GCTGGTCTCT .............................. CATTCAAGGGAATTGGATTTACTGGCTTGTAGCGAA 694322 30 100.0 38 TTGTAGCGAA .............................. CTGTAAAGAAAGTTGACAGTTTCTTGACCTCTTCCCAT 694390 30 100.0 38 CTCTTCCCAT .............................. CCTTTTTAGCAGTTCATCTGCGAGCCGAAACAGAGCCT 694458 30 100.0 38 AACAGAGCCT .............................. GGCAAAAAAGCTTGGAGAAGCTAGGCCTTTACGGACTG 694526 30 100.0 37 TTACGGACTG .............................. TATGGATACTGTAGGTACACTCGATACGTCAGCGCAA 694593 30 100.0 39 GTCAGCGCAA .............................. GGAGCCCCAGAGGAGTGTTCCGGGCCCGGGGGAGTCCCC 694662 30 100.0 35 GGGAGTCCCC .............................. CGTCGTCTTCGTAGATGTCTATTATCTCTACCTCC 694727 30 100.0 38 CTCTACCTCC .............................. TCACTTGTTCTAACTGCTGGTAAAGCTCTTTTAGTTGC 694795 30 100.0 37 TTTTAGTTGC .............................. TTTCGGGGGTTCGGGGCCTGAGCCGGCGGGGAATCCG 694862 30 100.0 40 GGGGAATCCG .............................. TGATGTAGTTAGCGAGATCCTCCTGGAGTCCATTCCTAGG 694932 30 100.0 37 CATTCCTAGG .............................. GACCCCGGAATGCCTACGAATTCAGTTAACAACTCAA 694999 30 100.0 37 AACAACTCAA .............................. GGAAAGGCTTCCACGTTGAGTTGCCCCGCTCGTCCCT 695066 30 96.7 GCTCGTCCCT ...............T.............. TTTACCCTAA ========== ====== ====== ====== ========== ============================== 30 30 37 GTTCCAATAAGACTCAAAGAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-0.60,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [535,620] Score: 0/0.18 # # Final direction: F [5.41,0.37 Confidence: HIGH] >NC_015680 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 856323 30 100.0 37 AAGCCCGCCT .............................. AGAATAGTTAATAAAGACAAAATAAGGGACTATCTGG 856390 30 100.0 37 GACTATCTGG .............................. AAAATCTTCATCTCCCACCACCTCCCTTCTTTTTGTC 856457 30 100.0 37 TCTTTTTGTC .............................. ACCCGCACGACGTCATAAAGCTGCCGAAGAACAGGGC 856524 30 100.0 40 AGAACAGGGC .............................. CATGACAACAAAAATGAGGGGGGTGGTTGGGCGTGAGTTT 856594 30 100.0 36 GCGTGAGTTT .............................. AATACGGGGCCCCGTTCCGAGGGCCCTCGGGGCGTG 856660 30 100.0 36 TCGGGGCGTG .............................. TTGACTCAGAGTCTGCGAATTGCGCTGAGGATGCTC 856726 30 100.0 GAGGATGCTC .............................. CACGGGGATT ========== ====== ====== ====== ========== ============================== 7 30 37 GTTCCAATAAGACTCAAAGAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-0.60,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [56.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [518,130] Score: 0.18/0.18 # # Final direction: F [5.45,0.37 Confidence: HIGH] >NC_015680 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 857086 30 100.0 44 GAGAATCGGG .............................. GTCGCTATCACGAAACAGCTCGGTCTCCTCGTGCTTAGTCCTGG 857160 30 100.0 37 TTAGTCCTGG .............................. GGCGGTCCTAGTAGGAGGACACTGGTCTTCTCTGGGT 857227 30 100.0 39 TTCTCTGGGT .............................. TTCTTTCCTTCAAAACCGTCCGGACCAACAGCCACGGTT 857296 30 100.0 42 AGCCACGGTT .............................. TGTTTTCTTCGAAGAACTGGCGCGGAGGCAGGTCGATTGAGG 857368 30 100.0 TCGATTGAGG .............................. GGGACTTCTTA ========== ====== ====== ====== ========== ============================== 5 30 40 GTTCCAATAAGACTCAAAGAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-0.60,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [63.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [255,44] Score: 0.18/0.18 # # Final direction: F [5.45,0.37 Confidence: HIGH] >NC_015677 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 3699383 32 100.0 37 NNNNNNNNNN ................................ CTCTGAGGTCACACGCCAAAATCGGCGCAATTGAATT 3699452 32 100.0 36 NNNNNNNNNN ................................ CCGCACGAAAGCGGCGCAGCAAGAGCTTGCTACGGA 3699520 32 100.0 35 NNNNNNNNNN ................................ ACGCTGTTCCAGTTGCGCCTGACTTTCGGCAACCC 3699587 32 100.0 36 NNNNNNNNNN ................................ CACATAGACAGGCGCTGAGGCGTTATTCAGGACAGT 3699655 32 100.0 35 NNNNNNNNNN ................................ TGGAGCGCGGCGTCGCCCTGCCCGTGCCCACGGAC 3699722 32 100.0 33 NNNNNNNNNN ................................ TTGTACCCCCCGGGCACCAGCACGCCGATCGGG 3699787 32 100.0 34 NNNNNNNNNN ................................ GTGGATGGGAACGCCCACAGGCTGCAGGCCTGGC 3699853 32 100.0 35 NNNNNNNNNN ................................ TCGTCCTGGTAGTTGCGGTCCAGTTCCGCGTCGTC 3699920 32 100.0 34 NNNNNNNNNN ................................ CTTGATCAGGTACTTGTCGCACCAGCTCTTGGTG 3699986 32 100.0 35 NNNNNNNNNN ................................ CACTCCTGCCGCGCCAGGAACGCGGAACGCGGCTC 3700053 32 100.0 34 NNNNNNNNNN ................................ CTGAATCCACACGAGCAACCGGCTTCCCGGTCAC 3700119 32 100.0 34 NNNNNNNNNN ................................ TCTGCCGTGTAGGGGCGCAGCTCGCACACCCCCG 3700185 32 100.0 35 NNNNNNNNNN ................................ AGTCCTTGCTACGACGTTGGGGTTGATGAGATTGG 3700252 32 100.0 36 NNNNNNNNNN ................................ TCCAGCTCGTCGCGGACGTCGTCAGCCAGGCCCCCG 3700320 32 100.0 35 NNNNNNNNNN ................................ AGTTCACGTGGTGCCGGCCAGTCGGGCAGCGCACT 3700387 32 100.0 35 NNNNNNNNNN ................................ AAGCGGTGGCCCGCTGCCCGGCGTGTCGCGCTCTC 3700454 32 100.0 35 NNNNNNNNNN ................................ GTTGTAAAGCTGGATCATGGCATAGGCCACGCCGC 3700521 32 100.0 33 NNNNNNNNNN ................................ CACAGCTCCGAAAGGCGCGAGCTCGAACCGCTT 3700586 32 100.0 36 NNNNNNNNNN ................................ ATGTCGGCGTTCGGGTCGATCCAGTCCCAGCGGCGC 3700654 32 100.0 33 NNNNNNNNNN ................................ TCTACCTGCACACGGCGGACGATAATTTTCTTA 3700719 32 100.0 35 NNNNNNNNNN ................................ GAAGCCCTGGAGCCGCCACAGTAGGCGAAGCCCGC 3700786 32 100.0 37 NNNNNNNNNN ................................ AACGACCTGGGCTAACCCATGCTGGACGCGGCGCAGG 3700855 32 100.0 35 NNNNNNNNNN ................................ CCGGCGCCGACACACCGTGCCCGTCTGAGGGGCTT 3700922 32 100.0 38 NNNNNNNNNN ................................ CGCAGCAGCCCCACCATGGGCGCCATGGAGAGCCTGCC 3700992 32 100.0 36 NNNNNNNNNN ................................ GAATTCATGCAGAGGGATGATGGCGCGGCCCGTGGG 3701060 32 100.0 35 NNNNNNNNNN ................................ TGCCGTGTCATTTTCAAGGCGTAAATCCACTCTCG 3701127 32 100.0 36 NNNNNNNNNN ................................ GCAAAACAACTCAGGCGTCACAACTCAACACCGGTT 3701195 32 100.0 36 NNNNNNNNNN ................................ GCTGAGAGGCTCGGTTACGGATCAAGAATTGACCTT 3701263 32 100.0 36 NNNNNNNNNN ................................ CTGCGGTGTCAGGTCTTCGATGGGCAGGGGCGTGCT 3701331 32 100.0 36 NNNNNNNNNN ................................ ACGGACAGCGCCGGGATGCCCGCTTGCCACAGCGTC 3701399 32 100.0 34 NNNNNNNNNN ................................ GCTTGCGCCTTGCTAGCAGCCGCTAGCGGCTTGC 3701465 32 100.0 35 NNNNNNNNNN ................................ GACGTAGCCGCTGTCGTCCCAACGGCCGCTGAAGA 3701532 32 100.0 34 NNNNNNNNNN ................................ CCGCCGTAGTACGCGATGGCTTCTGACTTGGTCA 3701598 32 100.0 34 NNNNNNNNNN ................................ TGCGCGGCGAACGAATCGGGCGCCATGCACTCGA 3701664 32 100.0 34 NNNNNNNNNN ................................ CTTCACTCCTACAACCGAGTTATCCACCGCCCAT 3701730 32 100.0 35 NNNNNNNNNN ................................ AGCTCCAGTGCACATGGCTCAGACCCTCCGCACTT 3701797 32 100.0 35 NNNNNNNNNN ................................ GCGCAGGCGCTGCTCGGCCTCGCGGCGAGCCTCGG 3701864 32 100.0 36 NNNNNNNNNN ................................ CTCCTGAGCGACGTGCGCCGCTGGGGGCCGTGGGAC 3701932 32 100.0 34 NNNNNNNNNN ................................ TCGACGAGGACGTGCTCGTTGCCGCTCACAGCGA 3701998 32 100.0 34 NNNNNNNNNN ................................ CTCCTGAGCGACGTGCGCCGCTGGGGGCCGTGGG 3702064 32 100.0 34 NNNNNNNNNN ................................ TTGACGCCCACTCCCCGCAGCACCACCGGCTTGC 3702130 32 100.0 36 NNNNNNNNNN ................................ GCCATGCCATCCCCCGCCCCCAGCTCGGCGCCCGCC 3702198 32 100.0 35 NNNNNNNNNN ................................ AAGCGTGAATTCGCGTTGCAGTTGCTGGCGGACGC 3702265 32 100.0 35 NNNNNNNNNN ................................ CGACGGCGTTCTAGCGGTTCTTATTTTTGTGGCGC 3702332 32 100.0 36 NNNNNNNNNN ................................ ACCGGCAACGTGCGCGTGCCGGACGTCACGCCTGGC 3702400 32 100.0 35 NNNNNNNNNN ................................ GTCAGCGTAGGCAACGACAAGGTTAGGCATGTGGG 3702467 32 100.0 34 NNNNNNNNNN ................................ CGCCGGCTGCGCCCTGGCCAGCTGCGCGGCCTGC 3702533 32 100.0 36 NNNNNNNNNN ................................ TGATCCATGCTGGTCAACAGCGAGCGCAGCGCGCTT 3702601 32 100.0 34 NNNNNNNNNN ................................ GGCGGCGGTGCCTTCGGCGCGAAAGCGCTGTTGC 3702667 32 100.0 34 NNNNNNNNNN ................................ GACACCGGCGAGCTGGCCATGCTGTGGGACGTGC 3702733 32 100.0 34 NNNNNNNNNN ................................ CCTGCGGGGGCGTCAGGAACATGGAACCGGTGAG 3702799 32 100.0 34 NNNNNNNNNN ................................ CACTCGAGGCCGTCGCTTCCGACACTTCTTCAAC 3702865 32 100.0 33 NNNNNNNNNN ................................ CGTTCCGGTCCGGCGCAAGCCCGGCCACCTGGT 3702930 32 100.0 35 NNNNNNNNNN ................................ ACGCTGCGCTATCCGGCCGACCGCGCCGCGATGGC 3702997 32 100.0 35 NNNNNNNNNN ........................A....... CCGTACGTACGGGAGCGGGAGCCGGGACGGGGGTG 3703064 32 100.0 35 NNNNNNNNNN ................................ GCGGGCCAGAACGGCCAGACCTACGCGGCCGGCGC 3703131 32 100.0 36 NNNNNNNNNN ....................A........... TCGATGTCGTAGCCGGCCTTTTCCTTTGCCGCCCAG 3703199 32 100.0 35 NNNNNNNNNN ................................ TTTGCCGATGTATTCCCCTCCAGCCGATCCTTGCG 3703266 32 100.0 35 NNNNNNNNNN ................................ ATAAAGCCCGACAATGATCGGCAAGTGTTTTTCTA 3703333 32 100.0 34 NNNNNNNNNN ................................ AACAGCGCGAAGACGCTGCCCCAGGTGATCGACG 3703399 32 100.0 34 NNNNNNNNNN ................................ ACGTCCGCCTGCAGCGCAAGGATCTTGAACTCGG 3703465 32 100.0 35 NNNNNNNNNN ................................ TCGGCCAGGGTGACTTTGCTGTGGTTGCGCGCCAC 3703532 32 100.0 36 NNNNNNNNNN ................................ GAGCGCACCGGGGGCGAGCTGCTCACGGCCAACGAG 3703600 32 100.0 38 NNNNNNNNNN ................................ GGGGGCATGTGGTCGAGCTGCAGCACCAGCAGGCAGGA 3703670 32 100.0 35 NNNNNNNNNN ................................ ACCGAGCCCGAGCCGGCCAGGGACCAGCTCACGAC 3703737 32 100.0 35 NNNNNNNNNN ................................ ATGGAGCTATGCACGCCCCCCCAGCCCGACCGAGG 3703804 32 100.0 34 NNNNNNNNNN ................................ CACTTCAAGACGTCTAGCAATGATTTTCTTTCCA 3703870 32 100.0 35 NNNNNNNNNN ................................ ATCACCGGCTCGGGCAGCGCGCCCGCAAGCTCGGT 3703937 32 100.0 34 NNNNNNNNNN ..................A............. ATTTGCCCCACCCCAGGGGGTGGAAACGGGTTGC 3704003 32 100.0 35 NNNNNNNNNN ................................ GATAACGCGCCGATGCAGCGCGGCCTGCTGGACGT 3704070 32 100.0 1 NNNNNNNNNN ................CGCGTG..T.GA..CG NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 71 32 34 GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [4,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-13.40,-14.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [182,822] Score: 0.18/0.18 # # Final direction: F [0.68,0.55 Confidence: LOW] >NC_015677 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 3699396 19 100.0 50 NNNNNNNNNN ................... CTCTGAGGTCACACGCCAAAATCGGCGCAATTGAATTGTCGCGCCCCACG 3699465 19 100.0 49 NNNNNNNNNN ................... CCGCACGAAAGCGGCGCAGCAAGAGCTTGCTACGGAGTCGCGCCCCACG 3699533 19 100.0 48 NNNNNNNNNN ................... ACGCTGTTCCAGTTGCGCCTGACTTTCGGCAACCCGTCGCGCCCCACG 3699600 19 100.0 49 NNNNNNNNNN ................... CACATAGACAGGCGCTGAGGCGTTATTCAGGACAGTGTCGCGCCCCACG 3699668 19 100.0 48 NNNNNNNNNN ................... TGGAGCGCGGCGTCGCCCTGCCCGTGCCCACGGACGTCGCGCCCCACG 3699735 19 100.0 46 NNNNNNNNNN ................... TTGTACCCCCCGGGCACCAGCACGCCGATCGGGGTCGCGCCCCACG 3699800 19 100.0 47 NNNNNNNNNN ................... GTGGATGGGAACGCCCACAGGCTGCAGGCCTGGCGTCGCGCCCCACG 3699866 19 100.0 48 NNNNNNNNNN ................... TCGTCCTGGTAGTTGCGGTCCAGTTCCGCGTCGTCGTCGCGCCCCACG 3699933 19 100.0 47 NNNNNNNNNN ................... CTTGATCAGGTACTTGTCGCACCAGCTCTTGGTGGTCGCGCCCCACG 3699999 19 100.0 48 NNNNNNNNNN ................... CACTCCTGCCGCGCCAGGAACGCGGAACGCGGCTCGTCGCGCCCCACG 3700066 19 100.0 47 NNNNNNNNNN ................... CTGAATCCACACGAGCAACCGGCTTCCCGGTCACGTCGCGCCCCACG 3700132 19 100.0 47 NNNNNNNNNN ................... TCTGCCGTGTAGGGGCGCAGCTCGCACACCCCCGGTCGCGCCCCACG 3700198 19 100.0 48 NNNNNNNNNN ................... AGTCCTTGCTACGACGTTGGGGTTGATGAGATTGGGTCGCGCCCCACG 3700265 19 100.0 49 NNNNNNNNNN ................... TCCAGCTCGTCGCGGACGTCGTCAGCCAGGCCCCCGGTCGCGCCCCACG 3700333 19 100.0 48 NNNNNNNNNN ................... AGTTCACGTGGTGCCGGCCAGTCGGGCAGCGCACTGTCGCGCCCCACG 3700400 19 100.0 48 NNNNNNNNNN ................... AAGCGGTGGCCCGCTGCCCGGCGTGTCGCGCTCTCGTCGCGCCCCACG 3700467 19 100.0 48 NNNNNNNNNN ................... GTTGTAAAGCTGGATCATGGCATAGGCCACGCCGCGTCGCGCCCCACG 3700534 19 100.0 46 NNNNNNNNNN ................... CACAGCTCCGAAAGGCGCGAGCTCGAACCGCTTGTCGCGCCCCACG 3700599 19 100.0 49 NNNNNNNNNN ................... ATGTCGGCGTTCGGGTCGATCCAGTCCCAGCGGCGCGTCGCGCCCCACG 3700667 19 100.0 46 NNNNNNNNNN ................... TCTACCTGCACACGGCGGACGATAATTTTCTTAGTCGCGCCCCACG 3700732 19 100.0 48 NNNNNNNNNN ................... GAAGCCCTGGAGCCGCCACAGTAGGCGAAGCCCGCGTCGCGCCCCACG 3700799 19 100.0 50 NNNNNNNNNN ................... AACGACCTGGGCTAACCCATGCTGGACGCGGCGCAGGGTCGCGCCCCACG 3700868 19 100.0 48 NNNNNNNNNN ................... CCGGCGCCGACACACCGTGCCCGTCTGAGGGGCTTGTCGCGCCCCACG 3700935 19 100.0 51 NNNNNNNNNN ................... CGCAGCAGCCCCACCATGGGCGCCATGGAGAGCCTGCCGTCGCGCCCCACG 3701005 19 100.0 49 NNNNNNNNNN ................... GAATTCATGCAGAGGGATGATGGCGCGGCCCGTGGGGTCGCGCCCCACG 3701073 19 100.0 48 NNNNNNNNNN ................... TGCCGTGTCATTTTCAAGGCGTAAATCCACTCTCGGTCGCGCCCCACG 3701140 19 100.0 49 NNNNNNNNNN ................... GCAAAACAACTCAGGCGTCACAACTCAACACCGGTTGTCGCGCCCCACG 3701208 19 100.0 49 NNNNNNNNNN ................... GCTGAGAGGCTCGGTTACGGATCAAGAATTGACCTTGTCGCGCCCCACG 3701276 19 100.0 49 NNNNNNNNNN ................... CTGCGGTGTCAGGTCTTCGATGGGCAGGGGCGTGCTGTCGCGCCCCACG 3701344 19 100.0 49 NNNNNNNNNN ................... ACGGACAGCGCCGGGATGCCCGCTTGCCACAGCGTCGTCGCGCCCCACG 3701412 19 100.0 47 NNNNNNNNNN ................... GCTTGCGCCTTGCTAGCAGCCGCTAGCGGCTTGCGTCGCGCCCCACG 3701478 19 100.0 48 NNNNNNNNNN ................... GACGTAGCCGCTGTCGTCCCAACGGCCGCTGAAGAGTCGCGCCCCACG 3701545 19 100.0 47 NNNNNNNNNN ................... CCGCCGTAGTACGCGATGGCTTCTGACTTGGTCAGTCGCGCCCCACG 3701611 19 100.0 47 NNNNNNNNNN ................... TGCGCGGCGAACGAATCGGGCGCCATGCACTCGAGTCGCGCCCCACG 3701677 19 100.0 47 NNNNNNNNNN ................... CTTCACTCCTACAACCGAGTTATCCACCGCCCATGTCGCGCCCCACG 3701743 19 100.0 48 NNNNNNNNNN ................... AGCTCCAGTGCACATGGCTCAGACCCTCCGCACTTGTCGCGCCCCACG 3701810 19 100.0 48 NNNNNNNNNN ................... GCGCAGGCGCTGCTCGGCCTCGCGGCGAGCCTCGGGTCGCGCCCCACG 3701877 19 100.0 49 NNNNNNNNNN ................... CTCCTGAGCGACGTGCGCCGCTGGGGGCCGTGGGACGTCGCGCCCCACG 3701945 19 100.0 47 NNNNNNNNNN ................... TCGACGAGGACGTGCTCGTTGCCGCTCACAGCGAGTCGCGCCCCACG 3702011 19 100.0 47 NNNNNNNNNN ................... CTCCTGAGCGACGTGCGCCGCTGGGGGCCGTGGGGTCGCGCCCCACG 3702077 19 100.0 47 NNNNNNNNNN ................... TTGACGCCCACTCCCCGCAGCACCACCGGCTTGCGTCGCGCCCCACG 3702143 19 100.0 49 NNNNNNNNNN ................... GCCATGCCATCCCCCGCCCCCAGCTCGGCGCCCGCCGTCGCGCCCCACG 3702211 19 100.0 48 NNNNNNNNNN ................... AAGCGTGAATTCGCGTTGCAGTTGCTGGCGGACGCGTCGCGCCCCACG 3702278 19 100.0 48 NNNNNNNNNN ................... CGACGGCGTTCTAGCGGTTCTTATTTTTGTGGCGCGTCGCGCCCCACG 3702345 19 100.0 49 NNNNNNNNNN ................... ACCGGCAACGTGCGCGTGCCGGACGTCACGCCTGGCGTCGCGCCCCACG 3702413 19 100.0 48 NNNNNNNNNN ................... GTCAGCGTAGGCAACGACAAGGTTAGGCATGTGGGGTCGCGCCCCACG 3702480 19 100.0 47 NNNNNNNNNN ................... CGCCGGCTGCGCCCTGGCCAGCTGCGCGGCCTGCGTCGCGCCCCACG 3702546 19 100.0 49 NNNNNNNNNN ................... TGATCCATGCTGGTCAACAGCGAGCGCAGCGCGCTTGTCGCGCCCCACG 3702614 19 100.0 47 NNNNNNNNNN ................... GGCGGCGGTGCCTTCGGCGCGAAAGCGCTGTTGCGTCGCGCCCCACG 3702680 19 100.0 47 NNNNNNNNNN ................... GACACCGGCGAGCTGGCCATGCTGTGGGACGTGCGTCGCGCCCCACG 3702746 19 100.0 47 NNNNNNNNNN ................... CCTGCGGGGGCGTCAGGAACATGGAACCGGTGAGGTCGCGCCCCACG 3702812 19 100.0 47 NNNNNNNNNN ................... CACTCGAGGCCGTCGCTTCCGACACTTCTTCAACGTCGCGCCCCACG 3702878 19 100.0 46 NNNNNNNNNN ................... CGTTCCGGTCCGGCGCAAGCCCGGCCACCTGGTGTCGCGCCCCACG 3702943 19 100.0 48 NNNNNNNNNN ................... ACGCTGCGCTATCCGGCCGACCGCGCCGCGATGGCGTCGCGCCCCACG 3703010 19 100.0 48 NNNNNNNNNN ...........A....... CCGTACGTACGGGAGCGGGAGCCGGGACGGGGGTGGTCGCGCCCCACG 3703077 19 100.0 48 NNNNNNNNNN ................... GCGGGCCAGAACGGCCAGACCTACGCGGCCGGCGCGTCGCGCCCCACG 3703144 19 100.0 49 NNNNNNNNNN .......A........... TCGATGTCGTAGCCGGCCTTTTCCTTTGCCGCCCAGGTCGCGCCCCACG 3703212 19 100.0 48 NNNNNNNNNN ................... TTTGCCGATGTATTCCCCTCCAGCCGATCCTTGCGGTCGCGCCCCACG 3703279 19 100.0 48 NNNNNNNNNN ................... ATAAAGCCCGACAATGATCGGCAAGTGTTTTTCTAGTCGCGCCCCACG 3703346 19 100.0 47 NNNNNNNNNN ................... AACAGCGCGAAGACGCTGCCCCAGGTGATCGACGGTCGCGCCCCACG 3703412 19 100.0 47 NNNNNNNNNN ................... ACGTCCGCCTGCAGCGCAAGGATCTTGAACTCGGGTCGCGCCCCACG 3703478 19 100.0 48 NNNNNNNNNN ................... TCGGCCAGGGTGACTTTGCTGTGGTTGCGCGCCACGTCGCGCCCCACG 3703545 19 100.0 49 NNNNNNNNNN ................... GAGCGCACCGGGGGCGAGCTGCTCACGGCCAACGAGGTCGCGCCCCACG 3703613 19 100.0 51 NNNNNNNNNN ................... GGGGGCATGTGGTCGAGCTGCAGCACCAGCAGGCAGGAGTCGCGCCCCACG 3703683 19 100.0 48 NNNNNNNNNN ................... ACCGAGCCCGAGCCGGCCAGGGACCAGCTCACGACGTCGCGCCCCACG 3703750 19 100.0 48 NNNNNNNNNN ................... ATGGAGCTATGCACGCCCCCCCAGCCCGACCGAGGGTCGCGCCCCACG 3703817 19 100.0 47 NNNNNNNNNN ................... CACTTCAAGACGTCTAGCAATGATTTTCTTTCCAGTCGCGCCCCACG 3703883 19 100.0 48 NNNNNNNNNN ................... ATCACCGGCTCGGGCAGCGCGCCCGCAAGCTCGGTGTCGCGCCCCACG 3703950 19 100.0 47 NNNNNNNNNN .....A............. ATTTGCCCCACCCCAGGGGGTGGAAACGGGTTGCGTCGCGCCCCACG 3704016 19 100.0 47 NNNNNNNNNN ................... GATAACGCGCCGATGCAGCGCGGCCTGCTGGACGTGTCGCGCCCCAC 3704082 19 100.0 31 NNNNNNNNNN GC................. GTCTACCTGGTGGCCGGCGGCACCGGCCACG 3704132 19 100.0 49 NNNNNNNNNN ................... TTCTTCCTTGGCCCTGGTGGCACGCTCGGCCGCCTTGTCGCTCCCCACA 3704200 19 100.0 48 NNNNNNNNNN ................... ATGCCGTGCAGCACCACGCTGCGCGGGCTCTTGAGGTCGCGCCCCACG 3704267 19 100.0 48 NNNNNNNNNN ................... ACCTTCGGCGGGTGGCAGCCCACATAGGCGTCGCGTCGCGCCTCACGC 3704334 19 100.0 46 NNNNNNNNNN G.................. GTAGTGGGCGCGGAGGCGCAGCGGATCCTGGGGGTCGCGCCTCACA 3704399 19 100.0 46 NNNNNNNNNN ..................T CACGTAGCGGGCATGGTCCGGGAACGGCGGCAGATCGCGCCCCATG 3704464 19 100.0 1 NNNNNNNNNN .......A.A...GA.C.T NNNNNNNNNN ========== ====== ====== ====== ========== =================== 77 19 47 CGGGCGCGTGGGTTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [3,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [45.0-43.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [195,441] Score: 0.18/0.18 # # Final direction: F [0.41,0.18 Confidence: MEDIUM] >NC_015678 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 407415 32 100.0 35 NNNNNNNNNN ................................ TTAGCAAAATTGGGGTGTTTTATCCTCAATATAGC 407482 32 100.0 37 NNNNNNNNNN ................................ CATTCACGTAGATATTCCTTCATTGCCTGAATGTCGT 407551 32 100.0 36 NNNNNNNNNN ................................ TGGTTCGCCTTTTGTATTTATGATCGTTCTCATCAT 407619 32 100.0 34 NNNNNNNNNN ................................ TACACTCTTTTTGACGCTTTGCAAGTCAATAAGA 407685 32 100.0 34 NNNNNNNNNN ................................ AAATTAATTATAAAGGTCAATCAAATTAGAATTT 407751 32 100.0 34 NNNNNNNNNN ................................ TTCCAAGACCTGATCCAAGTTAGTCGCTAGAGCC 407817 32 100.0 33 NNNNNNNNNN ................................ AGAAGAATATTTACAACCTTCTTGCTTCTCAAT 407882 32 100.0 34 NNNNNNNNNN ................................ ACCAAAAGATCCTAAGAACACAGAAAATCCAAAA 407948 32 100.0 33 NNNNNNNNNN .......T........................ CAGATTTTTTTGTAGCTCCTTGCGCTGCTCTGG 408013 32 100.0 34 NNNNNNNNNN ................................ TGATGATTATAAATATCTTGCAGAAGAAACTAAA 408079 32 100.0 34 NNNNNNNNNN ................................ TTCCCCAGTTAATTCCAAAAACTACACTAATAAG 408145 32 100.0 34 NNNNNNNNNN ................................ TTGACTAATAATAGTTGGCTTCACTTTCCCATCA 408211 32 100.0 34 NNNNNNNNNN ................................ TAAAACAAAATAAAAAAAGCCGACCAGTGCCGAC 408277 32 100.0 35 NNNNNNNNNN ................................ TTTGGATTATGGACAAGGATACCAGAAATTATCGG 408344 32 100.0 35 NNNNNNNNNN ................................ ATGGCCCGAAATAACCAAGTGGCACAAAGCCTCGG 408411 32 100.0 34 NNNNNNNNNN ................................ TCGTCCCATTGGTAGCGTTTATGCTCCTCAATAA 408477 32 100.0 37 NNNNNNNNNN ................................ TCGACCCAACTTTTTAGCATTAAAGGTGAACAAGCAC 408546 32 100.0 35 NNNNNNNNNN ................................ TGGTTTTACCCAAGGATCGCAAATAACCCTATAAT 408613 32 100.0 35 NNNNNNNNNN ................................ ATCCGCAGCGCTTTCTGGGCTGACTAAGGTAGCCG 408680 32 100.0 1 NNNNNNNNNN ..............T..AA....TTG....T. NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 20 32 34 GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [5,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.10,-4.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [148,112] Score: 0/0.18 # # Final direction: F [5.28,0.64 Confidence: HIGH] >NC_015680 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1231461 29 100.0 39 TAAACCCAGG ............................. TCAGTCAACCACGCAAATCACCGAAAATATTCAGCCAAC 1231529 29 100.0 39 TTCAGCCAAC ............................. AAGATTTTTGTGAACCCCTTTCGTCTTTTTACTATTGCA 1231597 29 100.0 39 TACTATTGCA ............................. ATAATATGTTTGCGATGTTCACGCCGTTTATTTCCACGT 1231665 29 100.0 37 ATTTCCACGT ............................. CGTACCCCTCCTCTGGGTACGCGTAGAATTCTACTGC 1231731 29 100.0 46 ATTCTACTGC ............................. AGATTTGGCCGGCTGAGCTGAGACTGAGCTGAGATTTGGCCCGAGG 1231806 29 100.0 39 TGGCCCGAGG ............................. GACTGCCACTTAGCAGTACCAGCTGCCTTCACACCCTTG 1231874 29 100.0 34 CACACCCTTG ............................. GTTTTGTTCTTAAAACAAAAACAAGGTTGCTTTT 1231937 29 100.0 36 GGTTGCTTTT ............................. TTCTTTTGCTTCTGCTGAATTTTTGCTCCTCTGGAG 1232002 29 100.0 39 TCCTCTGGAG ............................. TGCCCCAGCGCTCCGCTTCCTCAAAAACGAGCTCCGCGT 1232070 29 100.0 39 AGCTCCGCGT ............................. AATGTCATCAATGAGTGTGTTCGTATCGCTGTCGCTCCC 1232138 29 100.0 41 TGTCGCTCCC ............................. TAGTATAATGAGAATGGTGCGGAGGTGTGGAAGGATGAGAG 1232208 29 100.0 36 AGGATGAGAG ............................. TGGATTTCACTTGTTCTAACTGCTGGTAAAGCTCTT 1232273 29 100.0 36 TAAAGCTCTT ............................. ATTGATAGAGTGTTATCGCCAGTCAAGTCAATTGGG 1232338 29 100.0 39 GTCAATTGGG ............................. AGGCACTTGTTCAGGCTTGCCGTTCTCATCAAAAGTCCA 1232406 29 100.0 39 CAAAAGTCCA ............................. CTTCTCTAACCCTCCTGCTTTTTTGAACAATGTTCGGGC 1232474 29 100.0 38 ATGTTCGGGC ............................. CCTTCTCGCACCAGCCTCTCTAGCGTGCTTCTAAATAC 1232541 29 100.0 39 TTCTAAATAC ............................. CACTATACCCATCTGGATATTCCCCAACGAATTCCTCCT 1232609 29 100.0 38 AATTCCTCCT ............................. AATTCGGAAGAATAGAAATCCACGTTAAAAAGGTAAAA 1232676 29 100.0 44 AAAGGTAAAA ............................. TGGAAAGGGCTCGCCGACGCCACCATAGACACCGCCTGGAAGAG 1232749 29 96.6 38 CCTGGAAGAG ................A............ ACGGAGTATCTCATTGCAATGATTTCTAAAATCTTCAT 1232816 29 96.6 40 AAATCTTCAT ................A............ TTCGAGTTGAAAATCTTCTGCACGAACTTCGTCTTTGATA 1232885 29 96.6 40 GTCTTTGATA ................A............ GATGAGGGCGTCCTGGGCCCGGGTCACCCCCGCCCGTTGA 1232954 29 96.6 39 CGCCCGTTGA ................A............ ACGAAGACAAAGTATCTCTCTGGGTTCTCTAGTATCTCT 1233022 29 96.6 TAGTATCTCT ................A............ CCGAATACCT ========== ====== ====== ====== ========== ============================= 24 29 38 GTTTCCGTAGAACGTAGTCGTGTGGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:51.72%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.90,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [586,131] Score: 0.18/0.18 # # Final direction: F [0.45,0 Confidence: MEDIUM] >NC_015680 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1272599 29 100.0 42 CACGCCAAGG ............................. AAAGTAGGTATTTTGGATGAAGGGAGGTGATTGCTGTGAAGT 1272670 29 100.0 38 GCTGTGAAGT ............................. TATCACTTTTTCAATGACTTTTCTCCCCCTATCATCCT 1272737 29 100.0 41 CTATCATCCT ............................. TCGTCGATCAACGTGAACGTCACAAACACAAGCTTGGACGT 1272807 29 100.0 41 GCTTGGACGT ............................. TTACCACTCCCCCTAACACTACTTCAATCTCAAAGTTCTTT 1272877 29 100.0 39 AAAGTTCTTT ............................. AAATTCTTCCTGAATTCTCTATACGAACTAAATACAACT 1272945 29 100.0 38 AAATACAACT ............................. CAAGGGGCGTGGAGGCGCTGTATCGAAAATTGCGCCCC 1273012 29 100.0 50 ATTGCGCCCC ............................. GTCTACATCGAGGCTCTACCAGAGCGGATTGCAGCCCCCCACACGGTCTT 1273091 29 100.0 36 ACACGGTCTT ............................. ACATGCTCACGATGAAAATCGACAGTGTTATGACCG 1273156 29 100.0 37 GTTATGACCG ............................. GGTTTTCTCATCCCACTGCGCGTGGATTAGAGCAGAA 1273222 29 100.0 41 TAGAGCAGAA ............................. CTAAAGCACTGCGTGAGGCGCGTGAGGCCTCAGATGGGCGT 1273292 29 100.0 37 AGATGGGCGT ............................. CTTTAGCGTCGAAATTGGGTCGATGGAAAGAAAGGTT 1273358 29 100.0 42 AAGAAAGGTT ............................. GTGAAGAAACTGACGATCTTCCTTGCCTCATTCCACCGACCC 1273429 29 100.0 CCACCGACCC ............................. GGGCTCCTGTTCCCGTCAACGTTGCCGATGTTGAACCATCA ========== ====== ====== ====== ========== ============================= 13 29 40 GTTTCCGTAGAACGGAATCGTGTGGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:51.72%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.80,-0.70] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [56.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [106,97] Score: 0/0.18 # # Final direction: F [0.27,0 Confidence: MEDIUM] >NC_015680 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 32424 29 100.0 38 TACGCCAAGG ............................. AATTTGTCAATACTCCATGTCATAGCCCTCACCACCGT 32491 29 100.0 37 TCACCACCGT ............................. TGTAACTATTGAAGAATTCAACGAAGCTATTAATGAA 32557 29 100.0 38 TATTAATGAA ............................. TTCTCTTCGCCTCTTCCCACAACCCCCATCCCATTAAT 32624 29 100.0 35 TCCCATTAAT ............................. GTGGATATGTGGGAGGAGGATGGTGCCCTTATCGT 32688 29 100.0 36 CCCTTATCGT ............................. AGATTGCACCAACAGGTTATCGCATTACTACAGGTG 32753 29 100.0 41 ACTACAGGTG ............................. TTCATGGTCATCACCCTAATAAATAACAGCGTAACCCTCCC 32823 29 100.0 38 TAACCCTCCC ............................. GCTGACTTTCTTGTTGTAGCAGTTGCTGAAGAGGTCGC 32890 29 100.0 43 AAGAGGTCGC ............................. TGTACGGTGTCAGCATGGTCTTCGTCATGGTCTTCTTCGGTGT 32962 29 100.0 40 TCTTCGGTGT ............................. CCACTCCCACCACCCCCACGCATAATAAAAGAACAGGAAT 33031 29 100.0 36 GAACAGGAAT ............................. CTGCTGATGGAAAAACATTCTACATCTGGCCTGAGG 33096 29 96.6 41 TGGCCTGAGG .................C........... CTCTTCAACAAGCGAATACACTTCAAGGACAAGATCGTCAT 33166 29 100.0 38 AGATCGTCAT ............................. CGACATTCCCCAGCCCTTCGAGGATATCGTCGATTGAT 33233 29 100.0 40 GTCGATTGAT ............................. GGGCGCGTGCTCGTGCCCTCGCCTGCCAGCCGGCAACTGG 33302 29 100.0 38 CGGCAACTGG ............................. TCCACGCGGCCGCTAGCTTCTTCCTCTCCTCCATCCTC 33369 29 100.0 39 CTCCATCCTC ............................. TCTCAAGCACATCTGCTTCTAGCAAATAGTCTGGAAAGT 33437 29 100.0 36 TCTGGAAAGT ............................. CTTCATAAAGCAGTACTGGAGCCCAGGGGCATTCTC 33502 29 100.0 38 GGGCATTCTC ............................. GTGTTTTTATCCATAAATCTGTCCCAAGGTCTACGTCA 33569 29 100.0 41 GTCTACGTCA ............................. TGGAGCTCCGGAGGGAGGGGTTCCGTGTGGAGCCCCTCCCG 33639 29 100.0 38 GCCCCTCCCG ............................. TAACCTGGGCAAGCTTTGTGCTGTCGTTCATACACACC 33706 29 100.0 38 CATACACACC ............................. AGTTCCTCCCGACCTTGCAGAGGGAAAAGGGATTCTAT 33773 29 100.0 42 GGGATTCTAT ............................. CCTCCCGGTGAGTTCTACACTGTACCTTAGGGAGATGATTTC 33844 29 100.0 37 AGATGATTTC ............................. ATTTCAACGCCCGCATTTGTACCTGGCGAACCTTGAC 33910 29 100.0 44 GAACCTTGAC ............................. TTGCATAACGAAGAATCCTCTCGACTTCGTCTGGGAGAGCATAT 33983 29 96.6 38 GAGAGCATAT ............................C TGATAGAGCTCTTTTAGTTGCCTCTGGATCTCTCTGAA 34050 29 96.6 TCTCTCTGAA ................G............ GAACTTAATG ========== ====== ====== ====== ========== ============================= 25 29 38 GTTTCCGTAGAACGTAATCGTGTGGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.17%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.90,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [514,128] Score: 0.18/0.18 # # Final direction: F [0.86,0 Confidence: HIGH] >NC_015681 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1412661 37 100.0 45 CTAACTGCTG ..................................... GTAGCATGGTGATTTACTCGAAATATTACTTTGCCCAGCCAGGAC 1412743 37 100.0 41 CAGCCAGGAC ..................................... TATACTCTTCAAACTCGCCATAGAGCTGCTTCAGCTCTATG 1412821 37 100.0 41 CAGCTCTATG ..................................... AGGTCATCTTCTATAGAAAAACTGTAAAAAAGTTTAAAACA 1412899 37 100.0 42 GTTTAAAACA ..................................... CACTTCTTCTTCCCAAGGACATTCGACTCCTGCAGGCTTCTC 1412978 37 100.0 40 CAGGCTTCTC ..................................... TGCGTTGCAGGGTGGTAAAAAACGAGCCATTCTGAGCCCT 1413055 37 100.0 40 TCTGAGCCCT ..................................... AGTTGTCGCAGGTCCATAGGACGGCTGATTCCCAACCGTG 1413132 37 100.0 43 CCCAACCGTG ..................................... TCTCTCTTCTCGCTCCTGCAACGTAATGCCGTTAAGGTGTTCG 1413212 37 100.0 43 AAGGTGTTCG ..................................... TTGGTCCAAGGGAACACGAAATACTTAAGTCTTCCTCAATAAC 1413292 37 100.0 39 CCTCAATAAC ..................................... TCAATGAGCCAATCTATTATTTCTTGGCGGGAGAGCATC 1413368 37 100.0 42 GGAGAGCATC ..................................... TAATTACCCTCAACGACCAGGACTCCGCCGTCCTGGTCAAAC 1413447 37 100.0 40 CTGGTCAAAC ..................................... CCAGTTATGTCCACAACTTCTTTGTCTATCTTGTCTATCA 1413524 37 100.0 40 TTGTCTATCA ..................................... CCAAGGCTAGCCCAAGGGCCTTTCTATTCTTCGTATGCAT 1413601 37 100.0 42 TCGTATGCAT ..................................... CGACTTCGTCTCTCATGGAAAGCTTATGCTTTCCAACAAACC 1413680 37 100.0 41 CCAACAAACC ..................................... AGAGATATTGTCCTGTCCAGCCAGGACGGTGTCGTCCTGGA 1413758 37 100.0 37 TCGTCCTGGA ..................................... AAAACACCATATTGTTTATTTATAAATAAATTAACTC 1413832 37 100.0 40 AAATTAACTC ..................................... ATGCCGACACAACCAAAACAAATTCATCGGTGGCAATCTT 1413909 37 100.0 TGGCAATCTT ..................................... ACCTCCTTTT ========== ====== ====== ====== ========== ===================================== 17 37 41 GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.90,-6.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [2946,509] Score: 0.18/0.18 # # Final direction: F [0.55,0 Confidence: HIGH] >NC_015681 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 238340 30 100.0 36 NNNNNNNNNN .............................. CTAACTCTACTTTCTTTTTCCCCTGCTGTTTTGTAG 238406 30 100.0 36 NNNNNNNNNN .............................. TTATTTTGTAACTTTTCTTGTATCTCATCCCAACCA 238472 30 100.0 37 NNNNNNNNNN .............................. AAAATCCTTGATAAATTCCTGCTGCTATTCTTCTTAG 238539 30 100.0 37 NNNNNNNNNN .............................. AACAATTAAAAAATTCTCCTGCTCTTTCCCCTCCAGC 238606 30 100.0 37 NNNNNNNNNN .............................. GAAGGTTATAGAGCTTTGATTTCTTTAGTTAAACAGG 238673 30 100.0 36 NNNNNNNNNN .............................. TTAGATTTAAAAATTAAGGTAGCAGTTAAAGAAGGA 238739 30 100.0 36 NNNNNNNNNN .............................. TGGGCAACAAATATTTATAAAATCACGCCCCACATT 238805 30 100.0 36 NNNNNNNNNN .............................. ATAGAATACAGCTAAGAAGAATAGCAGCAGGAATTT 238871 30 100.0 36 NNNNNNNNNN .............................. GGGCTTTAAGAGAAGACTTTGGAAAAGTGGTTGGAG 238937 30 100.0 37 NNNNNNNNNN .............................. AAGTCTCAAATATTTAATGCAGTTAGCACAGTATTTG 239004 30 100.0 38 NNNNNNNNNN .............................. TTCCCTTAGAGGGACAGGTTATGTGGTAATAAAATCCT 239072 30 100.0 36 NNNNNNNNNN .............................. CTAACAAAATCTCTCCACTTTCTCATAAAAACCTCC 239138 30 100.0 37 NNNNNNNNNN .............................. ATAGACATAAGTGCGTGGGGGACATACCCATTTGCGT 239205 30 100.0 37 NNNNNNNNNN .............................. GACTGATGGAACATACGGCCTCCATTCAAGCTCTCCC 239272 30 100.0 37 NNNNNNNNNN .............................. GGGGGTGTGGGTGAGGAAAATAGAAAAAAGAGTACTG 239339 30 100.0 37 NNNNNNNNNN .............................. CAAGAACTTATACTTTTTAGGAAAATGTTTCTTAGCA 239406 30 100.0 37 NNNNNNNNNN .............................. TCATTATTGAGGCTGACACAGCACGATGCGAAAGCCC 239473 30 100.0 38 NNNNNNNNNN .............................. TCTTCCTGCTTTTTGGTTTTTGGATATTTTTGGTTACC 239541 30 100.0 36 NNNNNNNNNN .............................. CGATTTCCGCGGCTCTAATACTCCATGGCGGAGCAT 239607 30 100.0 37 NNNNNNNNNN .............................. GGTAGCGTTCAAGGGCTGTTGCGTCAAAGCCTTGCTC 239674 30 100.0 38 NNNNNNNNNN .............................. GTGCGTAACGCCTGAACATTTACCCTGGCATCTGCACA 239742 30 100.0 36 NNNNNNNNNN .............................. TTGATATTATTAGTGAAAATCCTTACTCATTGACTC 239808 30 100.0 37 NNNNNNNNNN .............................. ATATCCAATAGTTATTATTCCTATGACTTCATCTCAC 239875 30 100.0 38 NNNNNNNNNN .............................. ATGGCAAAATAACGGGCCGCCCTTTCTGCAGCCAGAGT 239943 30 100.0 37 NNNNNNNNNN .............................. TTACCTAACCTCTATAAATTTTAGCTTGAACGAAGTA 240010 30 100.0 36 NNNNNNNNNN .............................. ATTAAACTAATTTGGTTAGCAAGAAAACACACCACA 240076 30 100.0 37 NNNNNNNNNN .............................. TAATCATATTCAGATAAGGCCTCTAACAAAGGAACTA 240143 30 100.0 37 NNNNNNNNNN .............................. TTTGGTGGCCGTCATACCCTCCGACTATTTTCACTTT 240210 30 100.0 36 NNNNNNNNNN .............................. TAAAATGTTTTATCCCCTGCCTAATAGTTCCCTTGA 240276 30 100.0 37 NNNNNNNNNN .............................. AAGCTAAACTTCGGGACTTGTGAAATAGTCATATCGA 240343 30 100.0 37 NNNNNNNNNN .............................. TTTCTTCTATGCTCCGCATTATTTATCCTCCAATAAA 240410 30 100.0 37 NNNNNNNNNN .............................. TCGCCACCAGCCCGGATAATACGGGCATTCTTCTAGC 240477 30 100.0 37 NNNNNNNNNN .............................. TCGCCACCAGCCCGGATAATACGGGCATTCTTCTAGC 240544 30 100.0 37 NNNNNNNNNN .............................. TTTTGCCATCGGTCAGGTGCCGGTGGCCGTCCAGGTA 240611 30 100.0 37 NNNNNNNNNN .............................. TAAACTCTGCTTTGGTTAACCCTAGGCCCGCCTTTAC 240678 30 100.0 37 NNNNNNNNNN .............................. TTACCAGACTTTTGGTTAATATTATTAAGCTCGTTCT 240745 30 100.0 37 NNNNNNNNNN .............................. AAAGATTGAGCATCAACAGCGTTAATAATAATGTTGT 240812 30 100.0 36 NNNNNNNNNN .............................. CTTTATTGGTAAAATTATCAATTGTAGAGGAATTGA 240878 30 100.0 37 NNNNNNNNNN .............................. GAAGGACAATGCAAATAATACTAACCGAGAAACCAAG 240945 30 100.0 37 NNNNNNNNNN .............................. CTAAACCTTCTGCACTTCTTTGAATTAAAGCCACTGG 241012 30 100.0 37 NNNNNNNNNN .............................. GATATGGTAATGGAGAAATGAAAACAACAGCGTATTT 241079 30 100.0 37 NNNNNNNNNN .............................. AGCATTTTGGTGAGGAATTTGAGCGTTATATGGGAGT 241146 30 100.0 37 NNNNNNNNNN .............................. TTTTATTATTCATTTCCCCCTTTTTCTATGTATTCTT 241213 30 100.0 37 NNNNNNNNNN .............................. TTTTATTATTCATTTCCCCCTTTTTCTATGTATTCTT 241280 30 100.0 37 NNNNNNNNNN .............................. TAATCCCACCGGAGTGGTTCCGGTTCAGCAATGCATA 241347 30 100.0 38 NNNNNNNNNN .............................. GCGAAACGTCTGGCTTCAAGAGGGGACAACCTGATTCG 241415 30 100.0 37 NNNNNNNNNN .............................. TCGGCACCCACGAGGCAGGAATCTGGCGAAGAGTCGG 241482 30 100.0 37 NNNNNNNNNN .............................. AGCATTTTGGTGAGGAATTTGAGCGTTATATGGGAGT 241549 30 100.0 38 NNNNNNNNNN .............................. AAAAGCTTGAGGTAAAACTGGAAGAAGTCTTCCCTCAG 241617 30 100.0 37 NNNNNNNNNN .............................. AGTACTAACTAACTACTTTCTTAATACTTAACTAATA 241684 30 100.0 38 NNNNNNNNNN .............................. ACCTCATTTCCGAGAGCCTTAGCAATGGCACTTTTACC 241752 30 100.0 38 NNNNNNNNNN .............................. ACCTCATTTCCGAGAGCCTTAGCAATGGCACTTTTACC 241820 30 100.0 36 NNNNNNNNNN .............................. GGTAAAATTTCTTTGTTACGCATATTCACAATCCTC 241886 30 100.0 38 NNNNNNNNNN .............................. CTGGATCGGCCTATCGATGTAATTTTTGGTGCCTTAGT 241954 30 100.0 37 NNNNNNNNNN .............................. TCGTCCATGAGGGCTGGCACGACCGAAACGCTTCGAG 242021 30 100.0 36 NNNNNNNNNN .............................. TTTGAACGAGCTCATGCGGAGGTTCAAAGGGAAGGA 242087 30 100.0 36 NNNNNNNNNN .............................. TTTGAACGAGCTCATGCGGAGGTTCAAAGGGAAGGA 242153 30 100.0 36 NNNNNNNNNN .............................. TGGCCTTACGATAACGGAAGGCGGCTCTGAGAGAGG 242219 30 100.0 1 NNNNNNNNNN ................CT.A.GGGA.C.CT NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 59 30 36 GTTCACAGCCTAACTAAAAGGAATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.30,-1.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [135,401] Score: 0.18/0.18 # # Final direction: F [0.68,0.55 Confidence: LOW] >NC_015681 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1410352 37 100.0 40 AGAGCCTGCT ..................................... ATTATCAGAGTAATATGTATACTGTTTTCTGAAGCCAACT 1410429 37 100.0 40 GAAGCCAACT ..................................... ACATAAGCCCGCTCTCTTCGACCTCCTCGAGATACTCCTC 1410506 37 100.0 41 GATACTCCTC ..................................... TGCCTCTCCTTCCTCAATCCAGAGTTCGAGGCTTCCGCCAT 1410584 37 100.0 39 CTTCCGCCAT ..................................... AATTTAACTTTTGCCAAATACTCTTTTTTCTTTTCCATC 1410660 37 100.0 40 CTTTTCCATC ..................................... CCACTCAATGAGAGCGGATGGCTTGTCGGAGACGACTTTT 1410737 37 100.0 39 GACGACTTTT ..................................... TCAATGAGAGCTGGTAATTTAACAAATAAATTATTTCTT 1410813 37 100.0 43 ATTATTTCTT ..................................... CCCTGGCACAGTCGGGACAAACGTTCATATAGTGACCTATTAT 1410893 37 100.0 43 GACCTATTAT ..................................... AGTCGTGCCCGATGAACAAAACCACACCTCAATAGAGCCACCA 1410973 37 100.0 41 AGAGCCACCA ..................................... CCCGTAGTTACGGGCTGCTATAGCCAGAGTACTCGGGTTTG 1411051 37 100.0 39 CTCGGGTTTG ..................................... ATTACTTCCATTTCTTTACCTCCCTTTTCTTATTTTACT 1411127 37 100.0 42 TTATTTTACT ..................................... GGACTCACAAAGAGAGGTCCTTTGAAAATCCTCGGCCCCGTT 1411206 37 100.0 39 CGGCCCCGTT ..................................... TCTTAAGAAAGGAAGCTGTTGCTTCTTTTATTTTTTCTC 1411282 37 100.0 42 ATTTTTTCTC ..................................... TTCTTTTCCATCTCTCTTTACCTCCCTTTTCTTATTTTACTT 1411361 37 100.0 42 TATTTTACTT ..................................... TTTTTCCATAGCGCTGCTCCCCTTTTTTTGCTTAACTTACTA 1411440 37 100.0 37 TAACTTACTA ..................................... TCTATAAAATAAAATTGAAGCTCTGCCTTTCCATTTC 1411514 37 100.0 43 TTTCCATTTC ..................................... CCCCGCTCTCCCTTCTTTCCTTGTCCTTACGCTACATTGTAAG 1411594 37 100.0 38 ACATTGTAAG ..................................... TTGGAGACACTCGGGGCATGCATAACTAAAAGAAAGGT 1411669 37 100.0 38 AAAGAAAGGT ..................................... GTTGATTACTATTAATACTATTTTTTTCATTTTTTCCT 1411744 37 100.0 39 ATTTTTTCCT ..................................... TATAACCATTGTTTTCTAATACCTTATTAATGACACTAG 1411820 37 100.0 40 ATGACACTAG ..................................... AGTCCTGAGGCCTTCGGTAAGAACAAGAAACAAAAAAAGC 1411897 37 100.0 39 CAAAAAAAGC ..................................... GAGACGACCTTTACGGTCGTCCCGGATACATCAAACCAC 1411973 37 100.0 40 ATCAAACCAC ..................................... GTCTCACAAAGAGAGGCCCTTTGAAAATCCTCGGCCCTGT 1412050 37 100.0 40 TCGGCCCTGT ..................................... CAGACAAGCTGGCTCTCAAAATACGCCGTTTGGCGGAGAT 1412127 37 100.0 41 TGGCGGAGAT ..................................... CCTTAGCAGGCCTCCAGGCCTTGTCAGGAAACCTCAGGACC 1412205 37 100.0 38 CCTCAGGACC ..................................... TCAACATCAGATAAATAACACTTCACTATGTATTCCCT 1412280 37 100.0 39 TGTATTCCCT ..................................... CACACAAGACCATCATTCATTCCAGCCACATAGGTCTGG 1412356 37 100.0 40 ATAGGTCTGG ..................................... TGGCAATAGGTAAGAGTCCAGTTGCTGTGGCCAGTAAGCT 1412433 37 100.0 41 CCAGTAAGCT ..................................... AAACCACAACACAACTGTACTGTTCCTTAGCCTCTCAATAC 1412511 37 100.0 38 CTCTCAATAC ..................................... ACTATCAGCCAATTTAACTTTTGCCAAATACTCTTTTT 1412586 37 100.0 TACTCTTTTT ..................................... AACTGTGTAT ========== ====== ====== ====== ========== ===================================== 30 37 40 GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.90,-6.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [637,1832] Score: 0.18/0.18 # # Final direction: F [0.37,0.18 Confidence: MEDIUM] >NC_015681 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 918034 37 100.0 43 AAGGCCTGCA ..................................... TGGTTAGGTAGTCGTGTTCATACACGACTACCCGGTAGTTAGG 918114 37 100.0 40 GGTAGTTAGG ..................................... AAATAATGTTCATAAAAACAAGATTCACAACATGGTTCAT 918191 37 100.0 39 CATGGTTCAT ..................................... TGTGTTTTTTGGCCCACAAAACGGCTTTAGCATCTAAAT 918267 37 100.0 39 GCATCTAAAT ..................................... TCTGAAGCCAACTGGCTCGACAATATAATATACATTTAT 918343 37 100.0 40 ATACATTTAT ..................................... ATTAACACACTCTTCACAAACTACACCAAAACCTTCAACA 918420 37 100.0 38 ACCTTCAACA ..................................... TTTATTGTTACTTTTTCATTTTTATTTATTGGTAACCA 918495 37 100.0 37 TTGGTAACCA ..................................... ATGAATTTTTTATCAATTACATCTGAAAAATCAACTA 918569 37 100.0 40 AAATCAACTA ..................................... TCAACATCAGCTAAGAAACATCTGACAACAACCTCTTCAC 918646 37 100.0 43 ACCTCTTCAC ..................................... AGGTAATAGAGCTCGTGGTCAACCTTTCGTTCTAAGTAGTCCT 918726 37 100.0 40 AAGTAGTCCT ..................................... TCGAGGCTGTTTATTTTCGAATTGTCAAGCCACCTTTCCT 918803 37 100.0 39 CACCTTTCCT ..................................... CCTGGGTATTGAGGGCAATCCAATTGCATCCCGTAATTT 918879 37 100.0 43 CCCGTAATTT ..................................... AGGTAATAGAGCTCGTGGTCAACCTTTCGTTCTAAGTAGTCCT 918959 37 100.0 40 AAGTAGTCCT ..................................... TCGAGGCTGTTTATTTTCGAATTGTCAAGCCACCTTTCCT 919036 37 100.0 39 CACCTTTCCT ..................................... CCTGGGTATTGAGGGCAATCCAATTGCATCCCGTAATTT 919112 37 100.0 43 CCCGTAATTT ..................................... CTTTGAAAATCCTCGGCCCCGTTGTGATTTTCCCTGAAGACCA 919192 37 100.0 42 CTGAAGACCA ..................................... CCAGCACCTCTTCCTCATCAAGCTCATCCGTACTAGCGAACC 919271 37 100.0 40 CTAGCGAACC ..................................... GCCTTGTCTATCATGTTTTCGGTGCTGCTGAAGACAACAA 919348 37 100.0 39 AAGACAACAA ..................................... ATGTTCCTCTACGATATCATGATCCACAAGAGTTAGTTT 919424 37 100.0 38 GAGTTAGTTT ..................................... ATTGCTTTAAGATATCATATTGTTTATTTATGAATAAA 919499 37 100.0 44 TATGAATAAA ..................................... CTTGGTTTATTTCCCATAAAAATTCAGTATCGTTATTTTTTAAC 919580 37 100.0 39 ATTTTTTAAC ..................................... ATGTTCCTCTACGATATCATGATCCACAAGAGTTAGTTT 919656 37 100.0 GAGTTAGTTT ..................................... GTTGGGGAGTTGTTGTCGTTTAAAATACTTTAAATACCGG ========== ====== ====== ====== ========== ===================================== 22 37 40 GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.90,-6.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [631,266] Score: 0.18/0.18 # # Final direction: F [0.55,0 Confidence: HIGH] >NC_015682 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 1115343 35 100.0 42 TAGTGTTAGG ................................... TTACAAAAATAAAATTTTTCATGTGGACAGGTCCATTCAAGA 1115420 35 100.0 41 CCATTCAAGA ................................... AATTGATCATAAAGTATTCTTTCAATTGTCTCTTTCAAATT 1115496 35 100.0 44 CTTTCAAATT ................................... TTTCGTTGAACTTCTTTATCTTACTCGCACACTCTTTTTCACAA 1115575 35 100.0 39 TTTTTCACAA ................................... ACCTCTTTGTAAATCATTTTAACCCTCCCTTTTTTTATT 1115649 35 100.0 43 TTTTTTTATT ................................... TCTTCCGGTTTTGGTTTGTGCCATACTGGGAATTCAAATACGA 1115727 35 100.0 39 TCAAATACGA ................................... ACAGGACATTTTTCTAACATAACCTTACCTCCTTTTTAA 1115801 35 100.0 37 TCCTTTTTAA ................................... AAATTGCTCTATCCTCTCAAACTCAACTACTCTAAAT 1115873 35 97.1 42 TACTCTAAAT ..................................C ACTTTTATTTACTTTTCCTCCGATTTCGTTCCAAATATTAAT 1115950 35 100.0 41 AAATATTAAT ................................... ATACAAACCTCTTTACCCTCAGCACAAAGCTCTTCATATGT 1116026 35 100.0 40 CTTCATATGT ................................... TGTGGTAATTTTTTTTATCATGGCTTACACCTCTTTTTTA 1116101 35 100.0 37 CTCTTTTTTA ................................... AAATGATTTAATTAAATGTTGATAGTTCAACCAAAAG 1116173 35 100.0 CAACCAAAAG ................................... AAGAGAGGAG ========== ====== ====== ====== ========== =================================== 12 35 40 GTTGAAACCTGCCCTGGATTAAAAGGGATTGCGAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.29%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.10,-4.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [83.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [287,195] Score: 0/0.18 # # Final direction: F [1.05,0 Confidence: HIGH] >NC_015682 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================== ====== 1116401 34 100.0 39 TTTATATTTT .................................. AATAAGATCCCTGTCTTCTCCTATGATAATGAATTTTTT 1116474 34 100.0 41 TGAATTTTTT .................................. ATATACAAAAGCCACTTTCCTTATAATAAGGACAATTTTTA 1116549 34 100.0 38 ACAATTTTTA .................................. AAAATGATTTAATTAAATGTTGATAGTTCAACCAAAAG 1116621 34 100.0 42 CAACCAAAAG .................................. ATTGACACCTCCGTAAACTTTCGTATCGGCTGTATAATAGAA 1116697 34 100.0 42 TATAATAGAA .................................. AGATCTAAATCTACCTCCCCTTCCCTTTTCTCTTTCAAATGG 1116773 34 100.0 43 TTTCAAATGG .................................. CTTTTTCATTTTTGTCCTCCTCCTTTTGATTTTTTATTTTTAT 1116850 34 100.0 43 TTATTTTTAT .................................. CACTTTTATTTACTTTTCCTCCGATTTCGTTCCAAATATTAAT 1116927 34 100.0 34 AAATATTAAT .................................. ATTAACATCTGCAAAATTTATAGGAATGTTAATG 1116995 34 100.0 40 AATGTTAATG .................................. ATTTGCCATTTCCTTTCTCATAAGTCTCACCTCCTTATTT 1117069 34 100.0 43 CTCCTTATTT .................................. AAAGTTGCTACTTTTTCAATCATAGTTTTCCCCCTTTTTAGTG 1117146 34 100.0 38 CTTTTTAGTG .................................. CGCAGACTTTATGACATCAGAAAGTCTAATCTGAGAAG 1117218 34 100.0 39 ATCTGAGAAG .................................. CTTCTGTCCAGCCCAGCCCTAATAATTTGATATTGATTA 1117291 34 100.0 42 ATATTGATTA .................................. CCCTAAAAAATTGGGCAACTCTAAAAACTACTGAAAGAACAC 1117367 34 100.0 43 GAAAGAACAC .................................. CACTTTTATTTACTTTTCCTCCGATTTCGTTCCAAATATTAAT 1117444 34 100.0 34 AAATATTAAT .................................. ATTAACATCTGCAAAATTTATAGGAATGTTAATG 1117512 34 100.0 40 AATGTTAATG .................................. ATTTGCCATTTCCTTTCTCATAAGTCTCACCTCCTTATTT 1117586 34 100.0 43 CTCCTTATTT .................................. AAAGTTGCTACTTTTTCAATCATAGTTTTCCCCCTTTTTAGTG 1117663 34 100.0 38 CTTTTTAGTG .................................. CGCAGACTTTATGACATCAGAAAGTCTAATCTGAGAAG 1117735 34 100.0 ATCTGAGAAG .................................. CTTCTGTCCAG ========== ====== ====== ====== ========== ================================== 19 34 40 GTTGAAACCTGCCCTGGATTAAAAGGGATTGCGA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.94%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.10,-4.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [195,823] Score: 0.18/0.18 # # Final direction: F [0.64,0.18 Confidence: MEDIUM] >NC_015682 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 1117808 35 100.0 41 ATATTGATTA ................................... CCTAAAAAATTGGGCAACTCTAAAAACTACTGAAAGAACAC 1117884 35 100.0 42 GAAAGAACAC ................................... ACTTTTATTTACTTTTCCTCCGATTTCGTTCCAAATATTAAT 1117961 35 100.0 41 AAATATTAAT ................................... CCTAAAAAATTGGGCAACTCTAAAAACTACTGAAAGAACAC 1118037 35 100.0 41 GAAAGAACAC ................................... ACCCAGAGAAAAGAATAATCAAACAATCTTATTAAAAATTA 1118113 35 100.0 40 TTAAAAATTA ................................... ATTAAAGATACAGCCTTCATCACTCCATAACCTTCTATAG 1118188 35 100.0 41 CCTTCTATAG ................................... AATATTTTCTACTTTTTCAATTTTGGTATCCCATACTTTAG 1118264 35 100.0 41 CATACTTTAG ................................... ATATGTTTTTGCGGTGATTATTCCTTGACCTACTGATTTCA 1118340 35 97.1 40 ACTGATTTCA ...................C............... GTATAAATTTCTTTGCTTCTTCAAGTTGATAGTTTAAATC 1118415 35 97.1 AGTTTAAATC ...................C............... TTGGGGATCA ========== ====== ====== ====== ========== =================================== 9 35 40 GTTGAAACCTGCCCTGGATTAAAAGGGATTGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:51.43%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.10,-4.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1602,142] Score: 0.18/0.18 # # Final direction: F [0.55,0 Confidence: HIGH] >NC_015682 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1221572 29 100.0 36 NNNNNNNNNN ............................. ACAAACAGGTCCTGCATAATAACTACTTTCAACCCA 1221637 29 100.0 35 NNNNNNNNNN ............................. TTTGATAGAAAACAAAACAAAAAAGAGGTAAATGG 1221701 29 100.0 36 NNNNNNNNNN ............................. GCAAAAAGGGTGAAGGTGATACCGAAAAGTAAAAGT 1221766 29 100.0 36 NNNNNNNNNN ............................. TTAAAACTTGAACCTTTAAAAGAACTTTCACAGGAA 1221831 29 100.0 36 NNNNNNNNNN ............................. ATGTTTTTGGGGGACTGTGTTGTTATTTATGGATGA 1221896 29 100.0 38 NNNNNNNNNN ............................. CCACCTGCAAAAACAACACTTCCTACATCTCTAAAATC 1221963 29 100.0 35 NNNNNNNNNN ............................. TCTTCATTTTCAAGAACATATATAATAGGCATACT 1222027 29 100.0 36 NNNNNNNNNN ............................. CTGAAGATTTTTATAATAATACACCATTCTAAGCAA 1222092 29 100.0 36 NNNNNNNNNN ............................. GTGCTGGCAGTTCTAATGTATATGTGAATGGGAGGC 1222157 29 100.0 39 NNNNNNNNNN ............................. CGTTGTTTTATCTGCAGGTGAGGAATTGAAGCTTGATAC 1222225 29 100.0 38 NNNNNNNNNN ............................. ATTATTTAATGACCCAGCATTTTTTATTCTATACCTTC 1222292 29 100.0 37 NNNNNNNNNN ............................. CTATTCCTTGCTCAAATTCAACCGTCTTACTTTCAGT 1222358 29 100.0 35 NNNNNNNNNN ............................. GATTTTGATATGGATTATTTTTGGACTTTTGTTGG 1222422 29 100.0 36 NNNNNNNNNN ............................. TTTATATCATCAACTATCCTTCCTACATCTCCTACC 1222487 29 100.0 37 NNNNNNNNNN ............................. TCTCCCTCATCTCCTGAAATACACCAAGCCCCAACCA 1222553 29 100.0 37 NNNNNNNNNN ............................. GCCTTAGATCTTCAACAAAATTCATTAATTGACTGGA 1222619 29 100.0 38 NNNNNNNNNN ............................. TTGTATTTGCTTATAAAATTTTTCAAATGAGGATATTT 1222686 29 100.0 36 NNNNNNNNNN ............................. CTCGTGAAATTTCTCACATTCTCACATCACCCATCC 1222751 29 100.0 36 NNNNNNNNNN ............................. AATAGATACAGAAACTATACGTTAATCATGAGAGAC 1222816 29 100.0 37 NNNNNNNNNN ............................. AGACGTAGCCGCTATCATTCTTGCAGTATCTTCCGAA 1222882 29 100.0 36 NNNNNNNNNN ............................. TTTGCAGATTTTTGTAGTAATATATCATTCGAAGCA 1222947 29 100.0 36 NNNNNNNNNN ............................. ACTTCTTCTCAACTTTCTGTTTCTATTGTTGATGCT 1223012 29 100.0 36 NNNNNNNNNN ............................. ATCTCCTTTCTTTTTTTTCTTTTTTCTGTTCATGTG 1223077 29 100.0 35 NNNNNNNNNN ............................. ATCTCACTCACACCTTCAAATCCTACGCCAAATAG 1223141 29 100.0 36 NNNNNNNNNN ............................. GTGCTGGCAGTTCTAATGTATATGTGAATGGGAGGC 1223206 29 100.0 36 NNNNNNNNNN ............................. ATCAAACGGCACAAATACCTCGTCCAAAATAAGCAA 1223271 29 100.0 36 NNNNNNNNNN ............................. AGGGCGTGGGATGTTATAAATGCTCTTTCGTATCTT 1223336 29 100.0 36 NNNNNNNNNN ............................. GTAGTGCAATTTTTTCTTGTTATATCTTCTTAACTC 1223401 29 100.0 36 NNNNNNNNNN ............................. GAAGGGGTTAAGAGTTATGATGAAGAGAAGAAATTT 1223466 29 100.0 36 NNNNNNNNNN ............................. GAGGAAGTAAAGAAAGAGTATAGGAGGAGGGCAAAG 1223531 29 100.0 37 NNNNNNNNNN ............................. TATAGTGCACAGCATTTTGAGGCGTTTGCGTATTATG 1223597 29 100.0 36 NNNNNNNNNN ............................. CCTGCCACTCAGGAGTTCTCACAATCGCCTCCTCCA 1223662 29 100.0 36 NNNNNNNNNN ............................. GTGGTTCTGTCTGTGTCTGTTCTTTTTTCTGTTCAA 1223727 29 100.0 37 NNNNNNNNNN ............................. CTCCAGTATCGTGGCATTTCAAAAAAACGATTTAAAG 1223793 29 100.0 36 NNNNNNNNNN ............................. AAATACTAGCTCCACTACCGGCTGAAGTTTGACATT 1223858 29 100.0 36 NNNNNNNNNN ............................. CTACTTCTAAATTAAACCAGACAGGAAACTGAACTG 1223923 29 100.0 36 NNNNNNNNNN ............................. TCAGGTAATCTCTTTTTCAAAAAGAAATGTAACCCC 1223988 29 100.0 37 NNNNNNNNNN ............................. CCGAGGAGATAAGTGAAAACGAACTAGCTCTTCTCAC 1224054 29 100.0 37 NNNNNNNNNN ............................. AATGATTGCTTTAACAGAAAACGGGGATTTTGTTTTT 1224120 29 100.0 38 NNNNNNNNNN ............................. CTTCATAGCCTTCTTAAAATCAACCAAATTCTTGCCCC 1224187 29 100.0 38 NNNNNNNNNN ............................. TTCTTTTATATCATTTCTATTCCGTGCACTACTAACGT 1224254 29 100.0 35 NNNNNNNNNN ............................. ATTTCCCCGAGTTATAGCAACTTTTAGAGACAAAA 1224318 29 100.0 36 NNNNNNNNNN ............................. ATATATAGCAAAACATTCTAAAAACTCTTCTAAAAA 1224383 29 100.0 36 NNNNNNNNNN ............................. TACAATTTCCTTCTCTTATAAGGGAGAGAGTTCCAC 1224448 29 100.0 37 NNNNNNNNNN ............................. CAAGACTTTTTGCCTCTTTTTACTCCGCTTTCAGTTC 1224514 29 100.0 36 NNNNNNNNNN ............................. TTAACCAGACCTCAAAAAATCTTGTAAACATAGATT 1224579 29 100.0 37 NNNNNNNNNN ............................. CTTATACAACTTCCATCCTTTATCTCTTACCTCCACT 1224645 29 100.0 36 NNNNNNNNNN ............................. TTCTTAGAAGAGTGGATAAGGAGTGATGGGTGTATT 1224710 29 100.0 36 NNNNNNNNNN ............................. TCTATTTTCATTTGTCAATTTTTTGACTGTGTTTTT 1224775 29 100.0 36 NNNNNNNNNN ............................. ATCTACATCTACTTCTATCACCTTACCCTCAGCTAC 1224840 29 100.0 36 NNNNNNNNNN ............................. TTTTTTTCAGAGTAAGCACACCAGTGAGAATTAAAA 1224905 29 100.0 37 NNNNNNNNNN ............................. ACTTTAGAGTTTGCTTTAGCTAGCTAATAGTTAATTT 1224971 29 100.0 36 NNNNNNNNNN ............................. AGTGATCACAATATTAGAAGAAGAGTCATAATAAGT 1225036 29 100.0 35 NNNNNNNNNN ............................. GTGTTAAAACTTTTTAGGTTCAGCTATTCAAGAAG 1225100 29 100.0 1 NNNNNNNNNN .........T............A..T..A NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 55 29 36 GTTTCAATCCACCAAAGAGGAATTTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.52%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.20,-2.30] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [71.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [135,236] Score: 0/0.18 # # Final direction: R [0.68,4.5 Confidence: HIGH] >NC_015683 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================================== ====== 108234 38 94.7 35 CTACAGCGTC --.................................... CCACGCGCATTAAAAAGCGCACATCTTCACGAATG 108307 38 100.0 33 TTCACGAATG ...................................... GGTGTCACCGGAAAAGCTTGCTCATCCCCACCG 108378 38 100.0 33 ATCCCCACCG ...................................... GGTGTCACCGGAAAAGCTTGCTCATCCCCACCG 108449 38 100.0 33 ATCCCCACCG ...................................... GGTGTCACCGGAAAAGCTTGCTCATCCCCACCG 108520 38 100.0 34 ATCCCCACCG ...................................... CAGCTGCTCAGTCGTCCACGTTTTCATCTCCTGA 108592 38 97.4 CATCTCCTGA .C.................................... TACCGCGATGT ========== ====== ====== ====== ========== ====================================== 6 38 33 AAACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [13,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.10,-8.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [33.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [310,577] Score: 0/0.18 # # Final direction: R [0.37,0.64 Confidence: LOW] >NC_015683 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 108762 36 100.0 35 CTGCTCCTAG .................................... GAAAAGGAGAAAAAGTGAGTGTCACAGGTGAAATA 108833 36 100.0 36 AGGTGAAATA .................................... TACAAGCAAATTCTCGAGTGGTTCCCCCTAGCAGAT 108905 36 100.0 35 CCTAGCAGAT .................................... TTCTGGTCAGCCCAGCAAGCCCGCGTGCTTATACC 108976 36 100.0 TGCTTATACC .................................... AGCCCCCTCA ========== ====== ====== ====== ========== ==================================== 4 36 35 ACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [11,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.10,-8.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [46.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [838,195] Score: 0.18/0.18 # # Final direction: R [0.55,0.64 Confidence: LOW] >NC_015683 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2019591 29 100.0 33 TCCTGATTTA ............................. CCCATGCACAGTGACGGGGTGGATAAAAAAAGA 2019653 29 100.0 32 TAAAAAAAGA ............................. TCGTGTGTTTCTTTGCGGTTGTCCAAGAAAAT 2019714 29 100.0 32 CCAAGAAAAT ............................. AGAATCTATTCCCCTTCTTGGGCGAAGTTTGT 2019775 29 100.0 32 CGAAGTTTGT ............................. ATCTGGGGCAACTGCTTTGATGTGGAAATCAG 2019836 29 100.0 32 TGGAAATCAG ............................. TCCCCGTGAGATCGAGCGAGCTTGTTTAAAAA 2019897 29 100.0 32 TGTTTAAAAA ............................. CGCCCAACCCCACTCCTCACGGACCGTGGGGC 2019958 29 100.0 32 ACCGTGGGGC ............................. ACAAAACATAACCCGCATCACACAGGCGGGAA 2020019 29 100.0 32 CAGGCGGGAA ............................. TCGCTGAGCGGGTGAAATCCGGTGGCACGCTG 2020080 29 100.0 32 TGGCACGCTG ............................. CATCACCCCCGAACTCGCACAATACGCATTCG 2020141 29 100.0 32 TACGCATTCG ............................. CTGCAAAACCCAACCAGCAACCGCCGCCAGTG 2020202 29 100.0 32 GCCGCCAGTG ............................. CCTGCTCGGGCACAAAGAATATTCCGGCGCTG 2020263 29 100.0 32 TCCGGCGCTG ............................. AGCAAATTAGGGGCAATCCGGGACCTCTACCC 2020324 29 100.0 32 ACCTCTACCC ............................. GATTTATTTGGTGAGGGAGTGATGCGCAGTGA 2020385 29 100.0 32 TGCGCAGTGA ............................. ATTGAGGCTTATGGTAGGCATCTGACTGCGGG 2020446 29 100.0 32 TGACTGCGGG ............................. TCTCTACACATGGTGTAACGGGCCAATGCACA 2020507 29 100.0 32 CCAATGCACA ............................. ACCCGGTGCGTGGGCAAAACCCCGCCCCGTCG 2020568 29 100.0 32 CGCCCCGTCG ............................. CTACAAACTTTTCTGCAAACGCCACCTCCTCA 2020629 29 100.0 CACCTCCTCA ............................. ATCATTGCCCAGCTCACGAGCACGCTCGGCGG ========== ====== ====== ====== ========== ============================= 18 29 32 CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-10.50,-10.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [58.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1164,218] Score: 0.18/0.18 # # Final direction: F [0.45,0.37 Confidence: LOW] >NC_015683 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2018736 28 100.0 33 GTAAGTTAGT ............................ GAGTTTGTGGGGGCTGCGTTTCGTGAGGCCCCT 2018797 28 100.0 33 TGAGGCCCCT ............................ CTTCATCCGAGGGGGCTCACCATCGCGCATGAA 2018858 28 100.0 33 CGCGCATGAA ............................ CGGGCCTACGGCTTTGCGTCTGGCCCAGATGAT 2018919 28 100.0 34 CCCAGATGAT ............................ CCTCCCTGCTCTACGACATCGGGCATATCCCCGG 2018981 28 100.0 33 ATATCCCCGG ............................ CTGCTCGCTCGTGGCCACCCTTACCGCGCACTC 2019042 28 100.0 33 CCGCGCACTC ............................ CGAGCAGCCACGGTTTATATCTCGCTCCGATGG 2019103 28 100.0 33 GCTCCGATGG ............................ CAAGGTTTTTCACGGTTTCGGAATCCGCCATTT 2019164 28 100.0 33 TCCGCCATTT ............................ CGACTCCGCATCCTCCGGAGCAGGCAATGCAGC 2019225 28 100.0 33 GCAATGCAGC ............................ CTTCACCATTCTGATGCCGGTTTTCGCGGTTTG 2019286 28 100.0 33 TCGCGGTTTG ............................ CAGTGTTTTCTAGGATGAAAATGACCTACCATA 2019347 28 100.0 33 ACCTACCATA ............................ CCGCTGCGCTCGGCTACAATGCTGGCGCTAGCG 2019408 28 100.0 33 GGCGCTAGCG ............................ CGCCCCTGACTATCTCAGGGCATGGAAGGCATG 2019469 28 100.0 33 GGAAGGCATG ............................ CAAAGCTCCAGCCAAGAAAGGTATGCCAGTAGA 2019530 28 100.0 TGCCAGTAGA ............................ CAGGTTCCCAAATCTTTTATTGTTCCTGATTTACTTTTCTCCGCGTATGCGGAGGTAGTTCCCCCATGCACAGTGACGGGGTGGATAAAAAAAGACTTTTCTCCGCGTATGCGGAGGTAGTTCCTCGTGTGTTTCTTTGCGGTTGTCCAAGAAAATCTTTTCTCCGCGTATGCGGAGGTAGTTCCAGAATCTATTCCCCTTCTTGGGCGAAGTTTGTCTTTTCTCCGCGTATGCGGAGGTAGTTCCATCTGGGGCAACTGCTTTGATGTGGAAATCAGCTTTTCTCCGCGTATGCGGAGGTAGTTCCTCCCCGTGAGATCGAGCGAGCTTGTTTAAAAACTTTTCTCCGCGTATGCGGAGGTAGTTCCCGCCCAACCCCACTCCTCACGGACCGTGGGGCCTTTTCTCCGCGTATGCGGAGGTAGTTCCACAAAACATAACCCGCATCACACAGGCGGGAACTTTTCTCCGCGTATGCGGAGGTAGTTCCTCGCTGAGCGGGTGAAATCCGGTGGCACGCTGCTTTTCTCCGCGTATGCGGAGGTAGTTCCCATCACCCCCGAACTCGCACAATACGCATTCGCTTTTCTCCGCGTATGCGGAGGTAGTTCCCTGCAAAACCCAACCAGCAACCGCCGCCAGTGCTTTTCTCCGCGTATGCGGAGGTAGTTCCCCTGCTCGGGCACAAAGAATATTCCGGCGCTGCTTTTCTCCGCGTATGCGGAGGTAGTTCCAGCAAATTAGGGGCAATCCGGGACCTCTACCCCTTTTCTCCGCGTATGCGGAGGTAGTTCCGATTTATTTGGTGAGGGAGTGATGCGCAGTGACTTTTCTCCGCGTATGCGGAGGTAGTTCCATTGAGGCTTATGGTAGGCATCTGACTGCGGGCTTTTCTCCGCGTATGCGGAGGTAGTTCCTCTCTACACATGGTGTAACGGGCCAATGCACACTTTTCTCCGCGTATGCGGAGGTAGTTCCACCCGGTGCGTGGGCAAAACCCCGCCCCGTCGCTTTTCTCCGCGTATGCGGAGGTAGTTCCCTACAAACTTTTCTGCAAACGCCACCTCCTCACTTTTCTCCGCGTATGCGGAGGTAGTTCCATCATTGCCCAGCTCACGAGCACGCTCGGCGG ========== ====== ====== ====== ========== ============================ 14 28 33 CTTTTCTCCGCGTATGCGGAGGTAGTTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-10.50,-10.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [309,1318] Score: 0.18/0.18 # # Final direction: R [0,0.55 Confidence: HIGH] >NC_015683 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 26730 29 100.0 32 NNNNNNNNNN ..............A.............. TTATCGCGCAGATTGTGGAAGAAGCCGAGAAG 26791 29 100.0 32 NNNNNNNNNN ..............A.............. GGATGCACCTTTGGTTCATTTTCATGCTTTGC 26852 29 100.0 32 NNNNNNNNNN ..............A.............. TCATTTTTGGCTTTGATGAAGCTGGCGCGCTC 26913 29 100.0 32 NNNNNNNNNN ............................. CCACGTCCCGCCTCAACCTCAGCGACAACATT 26974 29 100.0 32 NNNNNNNNNN ............................. GCACACCATTCTCAGCGATCATATCAACCGCA 27035 29 100.0 32 NNNNNNNNNN ............................. CACCCGGCCATCTGAGCCGGGGCGCTAATCTC 27096 29 100.0 32 NNNNNNNNNN ............................. TTCGTTTGTCACGACGTTGCGGACAATGATTG 27157 29 100.0 32 NNNNNNNNNN ............................. GCTTTGTCGTAGGGGGCGCTGATTGCAAGGAG 27218 29 100.0 32 NNNNNNNNNN ............................. AATGACCTACCATAAAACCATACAAAAACCTA 27279 29 100.0 32 NNNNNNNNNN ............................. AACGCCGTGCCCTTTTCAATCTGATCACGCAG 27340 29 100.0 32 NNNNNNNNNN ............................. TGCCAGACGGAACGTATCTTATGAGCACCTTT 27401 29 100.0 32 NNNNNNNNNN ............................. AACGCGCCATCATGGGCGGCACCCCAAAGGGC 27462 29 100.0 32 NNNNNNNNNN ............................. GCTAGGGTCTAAACGTTACTACTTTTAAGGGT 27523 29 100.0 32 NNNNNNNNNN ............................. CGGCTGGTGATGAGGACGAAGACGCTGAGGAA 27584 29 100.0 32 NNNNNNNNNN ............................. GCAAGTAACTGCACCTGGCGTGTGTTTCCCCC 27645 29 100.0 32 NNNNNNNNNN ............................. GACTTCCACCCCTCAAAAACCAAACGCTCATG 27706 29 100.0 32 NNNNNNNNNN ............................. AGCCCGCCACCGAGAAGAAAATTCAGCAGCGG 27767 29 100.0 32 NNNNNNNNNN ............................. CCCGCGAAGCTTCTGCCACAAAGCCTCGTCGT 27828 29 100.0 32 NNNNNNNNNN ............................. ATTACATGAATTGGGTTCAAGATATGGAGCGC 27889 29 100.0 33 NNNNNNNNNN ............................. GTAAGTGAATACCCTGAGCTATTAAGAGCAGTG 27951 29 100.0 32 NNNNNNNNNN ............................. TCGGTGCGGTTTTGCGCAGCGCCGCGGAGTTG 28012 29 100.0 32 NNNNNNNNNN ............................. CAAAGCTGCTGATCTCCGAGGAACTAATGGAT 28073 29 100.0 32 NNNNNNNNNN ............................. ACGGACCTTGTTTTATCTGACGGCTGGCACTG 28134 29 100.0 32 NNNNNNNNNN ............................. CTGCCGCGCATCCCTCACCGGATCGGGGGGTG 28195 29 100.0 32 NNNNNNNNNN ............................. TTTGGGTGGAATTGTCAGAGCACGCGGCGAGC 28256 29 100.0 32 NNNNNNNNNN ............................. TAAAGATTCCAATTTATTCTTTGCGAAATCCT 28317 29 100.0 32 NNNNNNNNNN ............................. CTGCGAGTCGGTGTAGGTCAGGGTTCAAAATC 28378 29 100.0 32 NNNNNNNNNN ............................. CCGTGGCATTAGCGTTATGCTGAATTGCTTCA 28439 29 100.0 32 NNNNNNNNNN ............................. GAGGACTGGTGTGCGGGGAAAATCCCTCTGCT 28500 29 100.0 32 NNNNNNNNNN ............................. TCGGTGGGATGAGGGACGCCATTTGCTCAAAA 28561 29 100.0 32 NNNNNNNNNN ............................. TTGAGGCTAAAGCCCTCTGCGAAAGCGCCTAG 28622 29 100.0 32 NNNNNNNNNN ............................. CACTGACTGGCCCAGCAGGGCCACGGATGATC 28683 29 100.0 32 NNNNNNNNNN ............................. CTAAGGATGGGTCACAGTCGTGGTGGTCGCAG 28744 29 100.0 33 NNNNNNNNNN ............................. CGACCCCGTACTAGCAGAACTACTCCTAGCATG 28806 29 100.0 32 NNNNNNNNNN ............................. TTCACGCGCACGGATGAGGCGAAAAAGCCCTA 28867 29 100.0 32 NNNNNNNNNN ............................. AAGCAACGATTTCAAGATCACCCTTTTGATTG 28928 29 100.0 32 NNNNNNNNNN ............................. GCGGATTGCCCTTCGCGCTTTCCCACTTATCG 28989 29 100.0 32 NNNNNNNNNN ............................. GAAGGAAAATCGCCCCTCGCCCTTTACACCTC 29050 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 39 29 32 GGAACTACCTCCGCGTACGCGGAGAAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [9,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-10.30,-10.50] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [668,20] Score: 0.18/0.18 # # Final direction: F [0.55,0 Confidence: HIGH] >NC_015690 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 2686603 20 100.0 25 NNNNNNNNNN .................... TGTGCCGTTTCAATCCTTCCCTTTA 2686648 20 100.0 26 NNNNNNNNNN .................... GCTTTCGGGGAGGACGCTCGCTGCGA 2686694 20 100.0 27 NNNNNNNNNN .................... TTTATTGGATGTATTCTCTCCGTGCGA 2686741 20 100.0 36 NNNNNNNNNN ......CC..C......... TGGTTGTCCCTGGATGCCGCTGGAAAAAAAGCCCGA 2686797 20 100.0 1 NNNNNNNNNN .................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================== 5 20 28 ATCTGTTGGCTAGTACAACC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [90,582] Score: 0.18/0.18 # # Final direction: R [0.41,0.45 Confidence: LOW] >NC_015690 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================== ====== 1004713 18 94.4 43 GTGGCTCCGG ........T......... AAGATGAGCGGGAGTGCGCCCTGAAGCGCAGCAGCGATGGGTT 1004774 18 100.0 34 GCGATGGGTT .................. TAGGTAGTGAGCAGCCGTTCTTCGGTGGCCCCGG 1004826 18 94.4 44 GTGGCCCCGG ...........A...... AAAACGAGCGGGAGTGCGCCCCGAGGAGCAGCAGCGGCTGGGTT 1004888 18 100.0 CGGCTGGGTT .................. TGGGGAGGAAG ========== ====== ====== ====== ========== ================== 4 18 40 AACACGGAAAATCCGTGT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [40.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [150,381] Score: 0.18/0.18 # # Final direction: R [0,0.86 Confidence: HIGH] >NC_015703 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 4509667 37 100.0 36 AAAGGCCATA ..................................... CACCAAGTTGTGTCCTCATGGCGACTTTTGCATTGT 4509740 37 100.0 38 TTTGCATTGT ..................................... CGCGTTTACACATACGCAGCAAGCAGAGATGCGGCTCA 4509815 37 100.0 35 ATGCGGCTCA ..................................... CGTTGGAAAAAGTTCCTTAAGCGCAACGATGCCGG 4509887 37 100.0 35 ACGATGCCGG ..................................... ATTATGCCGCAAAATTTAGCCGATTGGCTATCGGC 4509959 37 100.0 35 GGCTATCGGC ..................................... CCTGCTGCATACTTTACCCGACGGGTTTCGCAATG 4510031 37 100.0 37 TTTCGCAATG ..................................... CCAATTTCAAAATCATCAAAAAGACATCATTTGATAA 4510105 37 100.0 37 CATTTGATAA ..................................... TATAATGATGTTGGAGCTTTAACAGGTTGGTGTGCTT 4510179 37 100.0 37 TGGTGTGCTT ..................................... AGATTTTGTAAAAACTTTACAGTTTTTACAAGAATCT 4510253 37 100.0 38 ACAAGAATCT ..................................... ACTGTTGAAGTATCTGTTGATGCTATTGCTCAACAATT 4510328 37 100.0 33 CTCAACAATT ..................................... GTGGATAATTGTGTTGGACAAAGAATATCACCA 4510398 37 100.0 36 AATATCACCA ..................................... ACAGAAAATCTTTATACAATTACCTTAAATGCTTTT 4510471 37 100.0 37 AAATGCTTTT ..................................... CCAATCATTGTCTGTGTGTGTATCTACTAAAGAAGAT 4510545 37 100.0 39 TAAAGAAGAT ..................................... CTTATATTGGCAAGGAGAATTGTACTATGGTACATCTTG 4510621 37 100.0 37 GTACATCTTG ..................................... CATTTAAAGGATTAAGACTTGTACATCAAGAACAACT 4510695 37 100.0 AAGAACAACT ..................................... AGCAGGGCTT ========== ====== ====== ====== ========== ===================================== 15 37 36 GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:59.46%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.40,-2.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [89,883] Score: 0.18/0.18 # # Final direction: R [0.37,0.45 Confidence: LOW] >NC_015703 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 5772288 30 100.0 36 TTCCCAACGG .............................. TGGTCGATGCCGCACAGAAGGAGTTTGAGGGCATCG 5772354 30 100.0 36 GAGGGCATCG .............................. TTTTCGGGGTTGGTTTATATTCCGGTTTGATTTTGC 5772420 30 100.0 37 TTGATTTTGC .............................. ACGGGCAAAGAATCAAAACAGGCTTTTTTGTGAAGCG 5772487 30 100.0 36 TTGTGAAGCG .............................. CGTTGAATCCCTACCTGCTTTTAGGGTTTGAAATAT 5772553 30 100.0 36 TTTGAAATAT .............................. AAAGGAAATTCAGCGCATTACGAAGGAGACGGCAGC 5772619 30 100.0 36 AGACGGCAGC .............................. ACGCTTTGAGCGACGAAACGATATTAGCCGCTGTGA 5772685 30 100.0 37 GCCGCTGTGA .............................. AAATCAGGGACGCAAAACTCGATGCACTGGATGCCGA 5772752 30 100.0 37 TGGATGCCGA .............................. ATTAAACCACACTCCCAACACTATAGCCCCTATCAAA 5772819 30 100.0 36 CCCTATCAAA .............................. AAGAACTTGCGGTGCTCACCAAAGAGATTCAGGCCG 5772885 30 100.0 36 ATTCAGGCCG .............................. AAAGAACCCGAAGCGAAGCCGCCGCCGCCATTAAAG 5772951 30 100.0 37 GCCATTAAAG .............................. ATATCGCTTTGGTGAGGTAGGAAAAAACAACGGTCTT 5773018 30 100.0 36 CAACGGTCTT .............................. ACAGTGCAGGCTGCAAGAGGGTTGGAGGACAATGGA 5773084 30 100.0 37 GGACAATGGA .............................. ATTCCACATCCAAGCCAATGTAGAGGTAGGATTTCGC 5773151 30 100.0 36 AGGATTTCGC .............................. AGTTTACCGCCAAAGTGGAGACGTTGACGGGACGCA 5773217 30 100.0 37 ACGGGACGCA .............................. AAAAAGGAGTAAAAACAGTTTCGCCCGGGTTTGTGTA 5773284 30 100.0 36 GGTTTGTGTA .............................. ACTTTCAGCGACTCGCCAACTTTCAGCGACCCGTCA 5773350 30 100.0 35 CGACCCGTCA .............................. TGCGTTAAGGGGGGAAATAAGAAGGTGCAGTTGCC 5773415 30 100.0 36 TGCAGTTGCC .............................. ATTCACTTTCCGCGTGATCGGTGTTTCGGTAGTTGA 5773481 30 100.0 35 CGGTAGTTGA .............................. AGCAGTACAATCAGGCACGCGTAAGGGTTGCGGAG 5773546 30 100.0 36 GGTTGCGGAG .............................. ACTCATGCACAATCAGAAACTTGCCGAAGATGCCGC 5773612 30 100.0 36 AAGATGCCGC .............................. TGACATTTTGAAATTTAAGCCCCTTAGCACTAGGGT 5773678 30 100.0 36 GCACTAGGGT .............................. AAATCAGGGACGCAAAACTCGATGCACTGGATGCCG 5773744 30 100.0 35 CTGGATGCCG .............................. TGACATTTTGAAATTTAAGCCCCTTAGCACTAGGG 5773809 30 100.0 35 AGCACTAGGG .............................. CTCCCTTTTAAAAAGGAGAGCCTCATCCATAAAGG 5773874 30 100.0 37 TCCATAAAGG .............................. CTTCATACTCTATCTTCAGGAGTTTTTTCTTGAGGTT 5773941 30 100.0 37 TCTTGAGGTT .............................. GTATATGCTGAACTACCTTCCCGATAATTGGATATGA 5774008 30 100.0 36 TTGGATATGA .............................. AGGTTTTTTCATGGTCCTCCACCTTCCAGCCGTACT 5774074 30 100.0 37 CAGCCGTACT .............................. ACTACCATCAGGTTTTTTTACTGCACCCGCAGATTTA 5774141 30 100.0 37 CGCAGATTTA .............................. CTTCTTTGATGGTAGAGGTGTCGATGTTCATCTTGAC 5774208 30 100.0 36 TCATCTTGAC .............................. GTATTCTCAAAAGATTTGAGTTACAAAGACAGCCTG 5774274 30 100.0 35 AGACAGCCTG .............................. AAAGCCGACAAAACAAAAGGAGTTGTTAAGCTGTC 5774339 30 100.0 37 TTAAGCTGTC .............................. ACAGTGCCGCCTTGTAGATGCTTGCGTCGTAGGTCAT 5774406 30 100.0 37 CGTAGGTCAT .............................. ACGTCGAGCGGTTGGCGTTCTGACTCTTAATATGCCT 5774473 30 100.0 37 TAATATGCCT .............................. CAACAGGTAAAACGGCCTAATGGCATACGAGGAACTA 5774540 30 100.0 36 CGAGGAACTA .............................. ATTGTCTACGTCTGAATAATGGGCCTTGTAGTTTTT 5774606 30 100.0 37 TGTAGTTTTT .............................. ACTATATTTTATTTGGGGAAAAACCGGAAGAACCCCA 5774673 30 100.0 37 AAGAACCCCA .............................. GCTCATACCACACTCCCAACACTATAGCCCCTATCAA 5774740 30 100.0 37 CCCCTATCAA .............................. ACGGGTTACGGACGGGTCGTACTGACAGGTTTTTACT 5774807 30 100.0 36 GGTTTTTACT .............................. AAAAGCCTTGTTGAAAAAGCGTTGGTCGTATTCGAT 5774873 30 100.0 36 CGTATTCGAT .............................. TTCTTTTCTATGGCTCCATTTGCAAATCTTGCTGAT 5774939 30 100.0 37 TCTTGCTGAT .............................. AGTTAAATGACGAACTCATTAAAATAAATTACAAAAG 5775006 30 100.0 38 ATTACAAAAG .............................. TGAAAGTTGCTGATTATCGTAAATCATAGTTATGATTG 5775074 30 90.0 36 GTTATGATTG CT..A......................... TGTCAGGAAGCTTTTTGGTTGGATGAATTGGATATA 5775140 30 100.0 36 ATTGGATATA .............................. CCTTTTGCCCCATTTTGGGCGTGTAGGTTATTTCGG 5775206 30 100.0 36 GTTATTTCGG .............................. AACGTTGTATTGGGTTAGATTGCAGTCAGTCCGGTA 5775272 30 100.0 36 CAGTCCGGTA .............................. TCCCAACGCCCGCAGCCGGTACATTTGCGAATGTGA 5775338 30 100.0 37 GCGAATGTGA .............................. AAGATGGCCGTCAGCACTCAATTGTTGAGGGTAAAAC 5775405 30 100.0 36 AGGGTAAAAC .............................. TGAAAGTTGCTGATTATCGTAAATCATAGTTATGAT 5775471 30 100.0 36 TAGTTATGAT .............................. TGCCCGGGCAGTCGTGGCATAACTACGGGCTTGCGG 5775537 30 100.0 35 GGGCTTGCGG .............................. TAAAATGAGTATTGCAATGGAATTAACGATTTATG 5775602 30 100.0 38 ACGATTTATG .............................. TAGATATTTTTACCTTCTATTTCGTCCGAAGCAAGCTG 5775670 30 100.0 37 AAGCAAGCTG .............................. CCGCGCAGTATGGGGGGATATACTGCAACATTGCGCT 5775737 30 100.0 37 ACATTGCGCT .............................. AACCTGCCGAAACTGCTACTGCCTCTGTTGTAGAGCG 5775804 30 100.0 37 TTGTAGAGCG .............................. ATGGGCGGCTGTTTTGGCGGTTTCAAACGCCTTCCGA 5775871 30 100.0 38 CGCCTTCCGA .............................. CGTCCCGCGCCCTGACTTTCCTAAACTCTGTTGGTCGG 5775939 30 100.0 37 TGTTGGTCGG .............................. TTTTGTTGGATAGACGAATTGGTGTTGCCCGCTCCTT 5776006 30 100.0 36 CCCGCTCCTT .............................. TGTCCACGACGGCAAACGGCAAAGTATTGACCGTGT 5776072 30 100.0 35 TTGACCGTGT .............................. ACTCCTTCCAATCTTCTTCCGTGAACGCGTCGGCC 5776137 30 100.0 37 CGCGTCGGCC .............................. GCGACAGGCAATAGAGTCGTTTGGCAGCGAAATAAAG 5776204 30 100.0 35 CGAAATAAAG .............................. ATGCCGACTATCTAACGAATATATTCACGGAGTTG 5776269 30 100.0 36 CACGGAGTTG .............................. GTAACCCTTGCGACATATAATCCCGCTGCGGTTGTT 5776335 30 100.0 37 TGCGGTTGTT .............................. TTGTATTAGTTATTGATTGGTTGCTTTGATTTGTCGT 5776402 30 100.0 36 GATTTGTCGT .............................. AAGAAAAAGGCGCGTGCATTTCTCAATATCAACGCG 5776468 30 100.0 35 TATCAACGCG .............................. ACACGTCCGACGTGCTGAACAAAGTAACGGGCGTG 5776533 30 100.0 36 AACGGGCGTG .............................. CCACCAACTGCAAGTCATACCCGTTGGCGGTTCGGC 5776599 30 100.0 36 GCGGTTCGGC .............................. TTGCCGTCGCAGGAGACACTCCGAGCAGCATTGCCG 5776665 30 100.0 36 AGCATTGCCG .............................. AATACCGTACCTTTTGTTATGACCACGCCCGCCCCA 5776731 30 100.0 37 GCCCGCCCCA .............................. TTCCGACGGATTCATCTGAAGTGCAACGTTGCAGTAT 5776798 30 100.0 36 GTTGCAGTAT .............................. AAAGCTAAACGAAAAGGAGTACGCCTACGACATGCA 5776864 30 100.0 36 ACGACATGCA .............................. TCGTTTTTCATGTAGAAAGCGCAGAGACGATTGAAA 5776930 30 100.0 35 ACGATTGAAA .............................. AAATATTATACCTGTTTACGCCACTCATGCCGCTG 5776995 30 100.0 36 CATGCCGCTG .............................. TTTTCCAAAACTTCGGCCGTTGACAGGTTCGCGTCC 5777061 30 100.0 36 GTTCGCGTCC .............................. ACAATAGCGTGCATGAGGCATTGGCAAGCGAGGATA 5777127 30 100.0 34 AGCGAGGATA .............................. TTGGGAATTTTAAGTACATAAGTTTTGCACGGGG 5777191 30 100.0 35 TTGCACGGGG .............................. CTTACCTAGCCGTAGTTCTCTCTTTTGCCGGGGTA 5777256 30 100.0 36 TGCCGGGGTA .............................. TGCTTCGTACTTATCGTCTGCCGGGAGTACCGCTAC 5777322 30 100.0 36 GTACCGCTAC .............................. TACTTTTTGGTGACGCGCGAAACTAAAAACGGTGTG 5777388 30 100.0 37 AAACGGTGTG .............................. AAGAAGCGCCGAGCATTAAGCCGCGCACCATCACCTT 5777455 30 100.0 37 CCATCACCTT .............................. TTCCAGGTTTTCGGCAAGGGCTTTGATTTGGTCAATA 5777522 30 100.0 36 TTGGTCAATA .............................. ATAGCAGCTCTTCCGCTACCAACGTCCCTGCCTCCG 5777588 30 100.0 35 CCTGCCTCCG .............................. ACGCGTTCGTGTCTCCGTCGATGCGTCCCATCGGT 5777653 30 100.0 37 TCCCATCGGT .............................. TCGCACACGCAAGCAGGATGCCGTCCGTGTTGTCGTA 5777720 30 100.0 35 TGTTGTCGTA .............................. ACAATGCCGCCTTGTAGATGCTTGCGTCGTAGGTC 5777785 30 100.0 37 GTCGTAGGTC .............................. TTGTTCAGCCACAAGTTGCGCTAATTTCGGGTGAAGG 5777852 30 100.0 38 CGGGTGAAGG .............................. CTTGCCTCAGGTGCAACGGTTGACTGTGCGGGTTGCGG 5777920 30 100.0 36 CGGGTTGCGG .............................. TGGAATAAGATGGAACACAACATGAACGGCATTCGG 5777986 30 100.0 34 CGGCATTCGG .............................. AAATAAAAAACAAGAGAAAAGACTGGAACCACAA 5778050 30 100.0 37 GGAACCACAA .............................. TTGAGTCCTATGACTTGGAATCTACGCTCGAAGTCAT 5778117 30 100.0 36 TCGAAGTCAT .............................. ACTTCACGTAGGTCAGATGCCGGCACCCGTGTTCAC 5778183 30 100.0 36 CCGTGTTCAC .............................. ACGAAGCGGGGTTTCAGATCAGTACGGTCGAACAAT 5778249 30 100.0 36 GTCGAACAAT .............................. ACGAAGCGGGGTTTCAGATCAGTACGGTCGAACAAT 5778315 30 100.0 37 GTCGAACAAT .............................. TCGCAGATAGACCGGGACACAGTTCCAGGGTGGGCAA 5778382 30 100.0 36 GGGTGGGCAA .............................. ATTGACGGCCCCGGCCACAAAAATCAACCTTTCAGC 5778448 30 100.0 35 ACCTTTCAGC .............................. GTGCAATCTGCTCATAAATCTTGCCGGTACGCCCG 5778513 30 100.0 36 GGTACGCCCG .............................. ATAAAGTTTCCTACCCACGTTTCGAGTACCGGGGTT 5778579 30 100.0 36 TACCGGGGTT .............................. CCCGCTACCGAAGGGTTGTAAATCCAGTTGCCTGTC 5778645 30 100.0 36 GTTGCCTGTC .............................. ATATCACCTTTTCCGTGGGGGTAATGCCCGTATTGA 5778711 30 100.0 36 CCCGTATTGA .............................. AAAAAGCATCAACGGCAAAGTGACGCTGAAATTCCA 5778777 30 100.0 36 TGAAATTCCA .............................. AATGAAGTAGCGCAGCGTGTCAAGTAAGTGGCCAAC 5778843 30 100.0 36 AGTGGCCAAC .............................. CAACAAAAGATGCTGATAGTTTGACCAGGATTTTGA 5778909 30 100.0 37 AGGATTTTGA .............................. TGCGGTCAGCACTCCGTTTGGATTATTGGCATTATCA 5778976 30 100.0 37 GGCATTATCA .............................. AAAACTTATTGGCCTTGTCGACGTTGGCCCGCGCCTT 5779043 30 100.0 36 CCCGCGCCTT .............................. ATCAGCGTTACAGTATTGACACGAATAACAATGCTG 5779109 30 100.0 36 AACAATGCTG .............................. TTTGCGCCGACAACATACTTTTTGCCGGTATCGGAA 5779175 30 100.0 36 GGTATCGGAA .............................. TAAAAAATAAAACAAGCAGAGAGCGCACCCCACGAA 5779241 30 100.0 36 ACCCCACGAA .............................. AAAGCAAGGAAGCATTGGGGGTTAAGTTGCGATACT 5779307 30 100.0 37 TTGCGATACT .............................. AGGCGCAGGCGGAAGCGGCTATCGTGGAGATTGTGCG 5779374 30 100.0 36 AGATTGTGCG .............................. TGATGGTTTTGGCGTAGGCACCTTTCCGGATAATAT 5779440 30 100.0 36 CGGATAATAT .............................. TAATCTGCGCGGGCGTGTAGCCTCGTTCCAAAAGGT 5779506 30 100.0 36 TCCAAAAGGT .............................. TGTCCACGACGGCAAACGGTAAGGTGTTCACCGTGT 5779572 30 100.0 35 TTCACCGTGT .............................. TGTACAAAGCGATGCAGGCCTGCGATGTGTGGTAT 5779637 30 100.0 36 TGTGTGGTAT .............................. CAGTTTTTTGCAGGCATTACGGCTGCCGGTTCCTTT 5779703 30 100.0 35 CGGTTCCTTT .............................. TGGCGAGGCGGTTAAGAATTAGTTGCATCGGTTTG 5779768 30 100.0 37 CATCGGTTTG .............................. TCAAAAGGTTGATATTGTTTTGCAGCACATTAAAGCT 5779835 30 100.0 37 CATTAAAGCT .............................. TCAATCAGTGCGGTATTGTGACGATCAATGATTTTCT 5779902 30 100.0 37 ATGATTTTCT .............................. TTTGGATTGTTGGCATTATCAAGCGCCTGCCGTTCCG 5779969 30 100.0 35 TGCCGTTCCG .............................. TATAGTGCAGGGAGGTAAAGCACATAAATCGGAAC 5780034 30 100.0 34 AAATCGGAAC .............................. TTTATTACAATGCCGTTCTAAAAGACATTGCCGC 5780098 30 100.0 38 ACATTGCCGC .............................. CTTATCCCTGAAGGTTGAGGGACTAATTCTTCCTGCTT 5780166 30 100.0 36 CTTCCTGCTT .............................. CTGTTAAACGTTGTTCTAAGCAGTGCGGCTCGTGCG 5780232 30 100.0 35 GGCTCGTGCG .............................. TTCGTTAAACTGCCGACGTTTGGCAAGTGGTTTTA 5780297 30 100.0 37 AGTGGTTTTA .............................. CCCACTGGTAGCGTGTTCCGGTATAATTCCCCCCTTT 5780364 30 100.0 37 TCCCCCCTTT .............................. CTACGCAAGTATATCAAAAGTATAGCCACTAATCCAA 5780431 30 100.0 36 ACTAATCCAA .............................. TACGACGGAAAGTAGATGTTGGTCCTATTAATTCCC 5780497 30 100.0 35 ATTAATTCCC .............................. TATAGTGCAGGGAGGTAAAGCACATAAATCGGAAC 5780562 30 100.0 36 AAATCGGAAC .............................. AGGATTGATGAAAGGGCATAGCGTCTAATATAGCTT 5780628 30 100.0 37 AATATAGCTT .............................. CACTTTAACCGGGGTAAAAAATGTCTAACCTCTGCTT 5780695 30 100.0 38 ACCTCTGCTT .............................. TTTGGTTTGTATCGCTTCTTTGAGTGTTGCCCCTTCCG 5780763 30 100.0 36 GCCCCTTCCG .............................. AAATGAAGCCTGACGAGGCGGCTTTTCAGATCAAAG 5780829 30 100.0 36 CAGATCAAAG .............................. AAGGTCTTTCCAATGCAAGCGGTTATATTCCCAAGG 5780895 30 100.0 37 ATTCCCAAGG .............................. TTAGGCGGCCGGGCTTTAAGATTCGGTACAGTTCTTT 5780962 30 100.0 35 ACAGTTCTTT .............................. TTAGGGCAAGAGGCTTTGAAACAGGCGTATTTCTC 5781027 30 100.0 35 CGTATTTCTC .............................. CTGTTACACTTTTATGCTACCCGTTTAATAGCCGG 5781092 30 100.0 36 TAATAGCCGG .............................. GCAGTTTTTTAAAAATAAGTTCATTGCTGCTGTCAA 5781158 30 100.0 37 CTGCTGTCAA .............................. CATCCGCGTAACCCTGCCCCAAACTGCCCAAATACGT 5781225 30 100.0 36 CCAAATACGT .............................. AAGAAGTCTATGTAAGACTTCATCTTTTCTTTGATT 5781291 30 100.0 36 TTCTTTGATT .............................. CTAGGGTTTGATTTTGGCAATTCGTTTCAGTAATTC 5781357 30 100.0 36 TCAGTAATTC .............................. GAGACAAGACCTGTAAAACCTTTAATTTTCACTGAG 5781423 30 100.0 36 TTTCACTGAG .............................. TTACGATAACATCCGAACTTTGCCATCCCCATGTAG 5781489 30 100.0 36 CCCCATGTAG .............................. AACCGTAGACACCGAAAAAGCGATTCGCTCCTACTA 5781555 30 100.0 36 GCTCCTACTA .............................. AGTGCTGGGCAAGGTGCAATTATTAAGGCAATAAAT 5781621 30 100.0 37 GGCAATAAAT .............................. TTGGGAGAAAATTACGACTATCTATCCCGTTTGTGCG 5781688 30 100.0 37 CGTTTGTGCG .............................. TCTTAGATAAATCTTTTTTTGTATCCTCAATTATAGC 5781755 30 100.0 36 CAATTATAGC .............................. TGCGCCAAAGAATGCGATCGTGTTTTCAGTCGCACC 5781821 30 100.0 35 CAGTCGCACC .............................. ATGCCTCCAAGGTGAAGGCATAGGGAAGTTCTAAA 5781886 30 100.0 36 AAGTTCTAAA .............................. TGCGCCAAAGAATGCGATCGTGTTTTCAGTCGCACC 5781952 30 100.0 35 CAGTCGCACC .............................. ATGCCTCCAAGGTGAAGGCATAGGGAAGTTCTAAA 5782017 30 100.0 36 AAGTTCTAAA .............................. CAACTAAAATGACAAAAGCAGAAAAATTCTTATTAA 5782083 30 100.0 36 TTCTTATTAA .............................. ACGGTCAGGCCGTCCTGATAACGTGCGCCCAATTGA 5782149 30 100.0 36 GCCCAATTGA .............................. AGACCTAAGTGATGACAAAGACGATGACTTCAAAAT 5782215 30 100.0 35 ACTTCAAAAT .............................. AATGTCATGAAGGGTATTAATTTCTACAACTTCTC 5782280 30 100.0 35 ACAACTTCTC .............................. AATGATGTAACTCGGTGCGACAGCTACCTCATGGG 5782345 30 100.0 37 ACCTCATGGG .............................. ATCAGCGTTACAGTATTGACACGAATAACAATGCCGC 5782412 30 100.0 36 ACAATGCCGC .............................. ATCTTGACTGCCAACACCACTTCTTTCGGTTGACAA 5782478 30 100.0 36 CGGTTGACAA .............................. CTGCTCCACACTTCGCAAACAGTTTCTTCCGGCAGT 5782544 30 100.0 36 TTCCGGCAGT .............................. TTTAAAAATAAGTTTCTGTTTCTCAATCAGGGCAAT 5782610 30 100.0 37 TCAGGGCAAT .............................. AAGAAAGTGGACTACAGCAACATTCAAAAGCTGGAAA 5782677 30 100.0 37 AAGCTGGAAA .............................. CTGTCTATTTTCTTCAGGCGAACGGTGTTTGCCGCGT 5782744 30 100.0 37 TTTGCCGCGT .............................. ATGGATGCCATATTGTCAAAGAAATCGTTTTGAGTAG 5782811 30 100.0 35 TTTTGAGTAG .............................. TAGCTGTTATTAAGTTATTAGTGTTGCTCTATACA 5782876 30 100.0 37 GCTCTATACA .............................. ATGACGCCTTGGCTGACCTTAACGACATTCCTTTTAA 5782943 30 100.0 36 TTCCTTTTAA .............................. TGCCTGCGTGTCGCTTCACGTTCACAAAGAAACGGC 5783009 30 100.0 36 AAGAAACGGC .............................. TGCGAAAGGTCTACGAGACCAACTTCAAATCAAAGC 5783075 30 100.0 36 AAATCAAAGC .............................. AATGCGAAAGCCGCGCATGGAGGCTTCCGAATAGAT 5783141 30 100.0 36 CCGAATAGAT .............................. GTTCTCAAAACTCGAGCCCGTCCCTAAAGGAGTAGA 5783207 30 100.0 37 AAGGAGTAGA .............................. TTCATTTAATCGCCGAAACAAGGCTTTTCAGTATGTT 5783274 30 100.0 35 TCAGTATGTT .............................. ATCGAAGTGACCGTGTACAGGTAGTTGAGTGTCCC 5783339 30 100.0 37 TGAGTGTCCC .............................. AACAATACAAGGCGAAAATTGCCGCCTGATAGTGAAA 5783406 30 100.0 36 GATAGTGAAA .............................. TCGTAAAATTGAAAGGCTTTAAACTGTTGAGCAATG 5783472 30 100.0 37 TTGAGCAATG .............................. GGCTTGGGTTGATGCAGCCACAAAACGGTACAACGAA 5783539 30 100.0 36 GTACAACGAA .............................. TTCAAGCGCCACTGCTCATACTTGGCAAGTAGCGTT 5783605 30 100.0 36 AAGTAGCGTT .............................. AAAATTTGCAGACTATATCCCCGGTCTGCAAGCGGT 5783671 30 100.0 36 TGCAAGCGGT .............................. AGTTCTGTCAAATTGGCAAAAGCGTTAAGTTGCAGG 5783737 30 100.0 35 AAGTTGCAGG .............................. AAAGCGTCCGATTAGGGTTGCCTATCGGCTCCGTC 5783802 30 100.0 37 CGGCTCCGTC .............................. AGGCTTTCCGATGAATGGGTAGAGGTTAAAACTTCGG 5783869 30 100.0 36 AAAACTTCGG .............................. AACATTGTAACCGTTACAATTCCTTAATATGGCACT 5783935 30 100.0 36 ATATGGCACT .............................. GAGGATGAATACGAATAAGGTAAAATTCAAAAAAGA 5784001 30 100.0 36 TCAAAAAAGA .............................. GGCTTAAAGGAGCACCAAGCCAAGTATCTCAAATTT 5784067 30 100.0 36 TCTCAAATTT .............................. TTAGGCAGGAAGGTATAGGCTGATTGGTGCAGCGTT 5784133 30 100.0 37 GTGCAGCGTT .............................. AAAGATAATCCTGCCGGATGGGTAGTTGTAAAATTTC 5784200 30 100.0 36 GTAAAATTTC .............................. ATCAGATTTTTCATCGACATTTAATTTTGTATCTGT 5784266 30 100.0 36 TTGTATCTGT .............................. TCGAAAATTCGTAGCCGACTGCAGTAAAATAGGTTT 5784332 30 100.0 37 AAATAGGTTT .............................. CGTCTTACTTCCTCACGTTTTACCTGTGCCTCGGTTT 5784399 30 100.0 36 GCCTCGGTTT .............................. GACGCCAACATTTGAAGAAGTGCTACAGGCACAAAA 5784465 30 96.7 AGGCACAAAA .............................T CGGAGGTGC ========== ====== ====== ====== ========== ============================== 185 30 36 GCTTTAATCGTACCTTTTTGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.20,-0.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [60.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [236,75] Score: 0.18/0.18 # # Final direction: F [5.32,0.41 Confidence: HIGH] >NC_015707 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1136555 30 100.0 37 GAGAAAACGG .............................. GTATTCAACGTATTCATTTTTGATTGTGGTTGGTCTT 1136622 30 100.0 35 GGTTGGTCTT .............................. TTTGAACTTTGAAGCTCTACACTCACACCATATAC 1136687 30 100.0 37 CACCATATAC .............................. ACGTAGTGGGATATACAGACGAGTGGCATATATTCAT 1136754 30 100.0 38 ATATATTCAT .............................. GTGTCTGGATGCGTTGTTGTTGTGTAAACACATCCATC 1136822 30 100.0 38 CACATCCATC .............................. TTTATATCTTCTCTGTTACTTATGCCTACCCATGGGCC 1136890 30 100.0 37 CCCATGGGCC .............................. ATTCTCGTTCCATACGAAGTTTTAATTGGACCCACCC 1136957 30 100.0 37 GGACCCACCC .............................. TGTATCTGACAAAAGCAGGAATGGCTTGTGGTTTACT 1137024 30 100.0 41 GTGGTTTACT .............................. TCGCCAGATACCGATATGACTTCGTTTGTTTTGACGCGCTT 1137095 30 100.0 37 TGACGCGCTT .............................. AGTTGTTCAAGCAATTCTTGAAGCACTTCTGGATCAT 1137162 30 100.0 36 TCTGGATCAT .............................. ATTTTATATTTCTTCTACTCAACCGGTATGGTCTAT 1137228 30 100.0 37 TATGGTCTAT .............................. GCGGATTTTGTTCATCTGTAACTTTAAATGCTCTTGG 1137295 30 100.0 37 ATGCTCTTGG .............................. ACCGCAAAACTGGCAACCCTGGTTACCTGGTTGCCAA 1137362 30 100.0 36 TGGTTGCCAA .............................. AGGCGTCAGCCCGGGGTTATGTGGACGAGCTATTGT 1137428 30 100.0 36 GAGCTATTGT .............................. TGCTTTTTGAAGCAGAGCCATGGTGATTGGTGTATA 1137494 30 100.0 37 TTGGTGTATA .............................. AGCACTGACATGCTGTCCCTCCTTTCGTTTTTTGCGC 1137561 30 100.0 36 TTTTTTGCGC .............................. TGTTGTGCGATCGCTGCTATGACTTGGATTCTGTTT 1137627 30 100.0 37 GATTCTGTTT .............................. TCTTTAGCTTCTCATGTAGCTCAGTAGGCAACCTTAA 1137694 30 100.0 36 GCAACCTTAA .............................. CGCTTTAGCTTTTCCTGCGTAACGAGTGCACCTATA 1137760 30 100.0 42 TGCACCTATA .............................. GTACTTTTACACGCAAACCAATCTTCCGCCCAGCTTGGCACG 1137832 30 100.0 37 GCTTGGCACG .............................. ATTTCACAAATCAGCGGAACACTTGACGAGATTGCGT 1137899 30 100.0 38 GAGATTGCGT .............................. GCTTTGAAACTGGCAACTTCTGTAACCTTGTTGCCAGT 1137967 30 100.0 40 TGTTGCCAGT .............................. GTGATTGTATCTGTTGCTTTACAATCGATTACTACGTCTG 1138037 30 100.0 38 ACTACGTCTG .............................. GGCCTAAGGGCAATAAGGTTCTCACTTGCTTTGCTCGC 1138105 30 100.0 38 CTTTGCTCGC .............................. ACGTACAGTCTGCGATGATAATTTCCACCATCATTATG 1138173 30 96.7 41 CATCATTATG .................G............ TTGTATGTTTCGTCTGCTATTTCATTGAGTCCTTTCGCCAT 1138244 30 96.7 36 CTTTCGCCAT .................G............ AAAGACTTAATTAGACACATCAACAGTTGGTTAGGC 1138310 30 96.7 37 TTGGTTAGGC .................G............ CGCTTCACAGCTTCATTTTCCATCTTTAACTTCTTCA 1138377 30 96.7 AACTTCTTCA .............................A TGCAATATG ========== ====== ====== ====== ========== ============================== 28 30 37 GTTTGAACCCTACCTATAAGGAATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.00,-3.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [68.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [296,996] Score: 0.18/0.18 # # Final direction: F [0.68,0.55 Confidence: LOW] >NC_015707 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1165766 30 100.0 36 GAAAAAACGG .............................. TTTGTATACACAAGTGATGAAGGGTCTGGATATTGT 1165832 30 100.0 36 TGGATATTGT .............................. CATTCATGCTTTCTAGATATTACAAATCCCACTACA 1165898 30 100.0 36 TCCCACTACA .............................. ACTTGAACGCCTTGCGGGCAGACTAAGAGAATATCC 1165964 30 100.0 37 GAGAATATCC .............................. GCTCGTTTGCTTCTTCAAGCAGTTTTGCGGTGATTGC 1166031 30 100.0 36 CGGTGATTGC .............................. GAGGCTTTTTCGGCTCAACTGGCAACGTCGGTTCAA 1166097 30 100.0 36 GTCGGTTCAA .............................. AATGGGAGGAACTGTATACTACTGCGACACAGATTC 1166163 30 100.0 37 ACACAGATTC .............................. TTGTGAATTCTTATAACATCACCTTCGATCCACTCTA 1166230 30 100.0 37 ATCCACTCTA .............................. TGGGTATGTGGGCGCAAGTTTTGAATCAAAAGACTTA 1166297 30 100.0 37 AAAAGACTTA .............................. ATTTCCGTTTGCGTGTGTTCGCCTGTCACTGTTACGA 1166364 30 100.0 37 ACTGTTACGA .............................. ACTACGTAACATCTACACGTGTGTTCACGTTCACCTC 1166431 30 100.0 36 CGTTCACCTC .............................. GCTTTTTGACTTATTGCACTGACGTTTGTGTTGATT 1166497 30 100.0 36 TGTGTTGATT .............................. CTTTCAACATAATTGGTTGTGATGTATCAGCACCAA 1166563 30 100.0 39 TCAGCACCAA .............................. CAGCGTTTATTCGATGAAAACTAAGAAGTATTCTATACG 1166632 30 100.0 38 ATTCTATACG .............................. ACGCTTGCCTCTCTGTGTCTGAGGCCAACTGCAATCAA 1166700 30 100.0 CTGCAATCAA .............................. TTTCCAAGTT ========== ====== ====== ====== ========== ============================== 15 30 36 GTTTGGACACTACCTATGAGGAATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.00,-3.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [68.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [289,474] Score: 0/0.18 # # Final direction: R [0.27,0.37 Confidence: LOW] >NC_015707 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1151411 30 100.0 36 GAAAAAACGG .............................. TTTTTTCAAAAATATACTTCGCAGTCGAAATTGACA 1151477 30 100.0 36 GAAATTGACA .............................. GCTAAAATATTCGGGACAGCGGGCTTTGCTGTTCCA 1151543 30 100.0 37 TGCTGTTCCA .............................. ACGTCTAAAACCTTGTGCATTGCTAGTCTATCCGTAC 1151610 30 100.0 35 CTATCCGTAC .............................. TTTGTGCATCTTCCGGCAGTTCTGTTGCTCCCTCT 1151675 30 100.0 39 TGCTCCCTCT .............................. ATGATTTTAATAAAGGGGGGGTTTGATGGGTAAAAAACC 1151744 30 100.0 37 GTAAAAAACC .............................. ATGGTGGGCGCAAAAAGAAGGAGGGATTTACATGATA 1151811 30 100.0 34 TTACATGATA .............................. GGTGTACTAGCCAACAGGCACGGCATCTGGCAGA 1151875 30 100.0 37 ATCTGGCAGA .............................. TCTTTTTCTGATTCGCCGTTGATACTAACTCTGATTA 1151942 30 100.0 35 ACTCTGATTA .............................. TGTATTTCACGGATCTATGCAGCTTCAGATGGATC 1152007 30 100.0 38 CAGATGGATC .............................. GCCTGCAAGGCGTTCAAGTTGACGCTAAGACCTATCTC 1152075 30 100.0 42 GACCTATCTC .............................. ATGTCAATCGCCTTCGCTGCGGCACGTAACGGAGACATACCC 1152147 30 100.0 39 AGACATACCC .............................. CCGTTAACATACTTAATCGTAAACGGTGGATTCTCCCCA 1152216 30 100.0 41 ATTCTCCCCA .............................. TCCGCTGCCCCTTCTTTGCCTGCAGGTTCTTCTCTATATCC 1152287 30 100.0 36 CTCTATATCC .............................. CCTTATTCGTGATGTTTAATCTTTCCAACACTGAAG 1152353 30 100.0 37 AACACTGAAG .............................. TCTGGCTTAAAAGCAAAGTGATGAGTTCTCTGCCAGT 1152420 30 100.0 36 CTCTGCCAGT .............................. GCTTCAAGCAGGTGGACTACAACCCGCTTGTTAAAG 1152486 30 100.0 37 CTTGTTAAAG .............................. ATGCCTTGTGTATTCCAACAATTCCGCATAGAAAATC 1152553 30 100.0 39 ATAGAAAATC .............................. TCCGAATGCGGATTATAGTATCTCTGTTTTCTTAGACAT 1152622 30 96.7 37 TCTTAGACAT .........................A.... ATTAATGGGATCTACGTAAATGGCATTGGCCCGCTTA 1152689 30 100.0 36 GGCCCGCTTA .............................. TTGCGGCACGGCGGCAAATTTCGTCATAGTTCATTT 1152755 30 100.0 40 TAGTTCATTT .............................. TCGTCATACCCTGCGCCGTCGTAAGCTGCGATGCTGACCG 1152825 30 100.0 ATGCTGACCG .............................. ACGTCTTACG ========== ====== ====== ====== ========== ============================== 22 30 37 GTTTGGACACTACCTATGAGGAATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.00,-3.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [266,394] Score: 0/0.18 # # Final direction: F [0.68,0.37 Confidence: LOW] >NC_015707 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1176111 29 100.0 37 GAGAAAACGG ............................. CAACTCTAACTTCGAATCTGTCGGGATATATTGCTGA 1176177 29 100.0 38 ATATTGCTGA ............................. CAGGATTGATTCTTCCACCACCTTCAAATGTTAATGCA 1176244 29 100.0 40 TGTTAATGCA ............................. CACAAACTTTCCATCTTTGAACAACAGTGAAGCACTTAAC 1176313 29 100.0 36 AGCACTTAAC ............................. CCTACATTCATTGTAATCATTCAACCACCTCCAATC 1176378 29 100.0 36 ACCTCCAATC ............................. CGTACGTATAGTCTCCGATGATAATTTCCGCCATTG 1176443 29 100.0 38 TCCGCCATTG ............................. CTTGTTTTTTTGCAAAATTGATTCGATACACGAAATGA 1176510 29 100.0 37 CACGAAATGA ............................. CATGTTTTCCACCAATGCGTCCAATCGATCCCGTTCA 1176576 29 100.0 37 ATCCCGTTCA ............................. CACCATATGATGTGTTCGTTCGTACTATGGACCAGGT 1176642 29 100.0 37 TGGACCAGGT ............................. CTACGTATACACAAACGTCTGATAAATTTGAATCACA 1176708 29 100.0 42 TTGAATCACA ............................. CTTGTTCCTGATGTTTAGCGCCTTAAGCACGGAATCCTCAAC 1176779 29 100.0 37 AATCCTCAAC ............................. TTTTTCGAGTATACCAGTAAGTTCGGAACTGTGCAAA 1176845 29 100.0 37 ACTGTGCAAA ............................. CTTTGATTCGGTAACTTTTATTTTTTGCTTTATAAAG 1176911 29 100.0 39 CTTTATAAAG ............................. CGCGTTAGACAAATTTGTTAATTCAACAGGCTTCTCTGG 1176979 29 100.0 39 GCTTCTCTGG ............................. CTGATATATACGCGTGAAATCCGTAATCACTCGGAAAAT 1177047 29 100.0 37 CTCGGAAAAT ............................. CTGTATCTGAGTGTAAGAGATAGTGCCTTGAAAGATT 1177113 29 100.0 38 TTGAAAGATT ............................. CAGTACTAGTACATGCCGGCAATCTATCCAACCGCTGT 1177180 29 100.0 37 CAACCGCTGT ............................. CTTTTCTTCGCCGTTCCTACGCTTAGTCTATATTCTT 1177246 29 100.0 37 CTATATTCTT ............................. CGGATCTGTTACTGCATCTGGTCTTTCGTTAAGCATC 1177312 29 100.0 36 GTTAAGCATC ............................. CAGCTTGTCTGCACTTGGCGCAGATTGTATGCTAAG 1177377 29 100.0 38 GTATGCTAAG ............................. CTATTGTGATAGACTGTGACCACATTTTTATCTCTGAC 1177444 29 100.0 38 TATCTCTGAC ............................. CGTATTCAGAACACGGTGTCACGTACAATTTGAAATCC 1177511 29 100.0 36 TTTGAAATCC ............................. CTTTGGTTTTAGCGGGCGCTGCGAAGGCGGGCGAGC 1177576 29 100.0 37 GCGGGCGAGC ............................. CTACGTATACACAAACGTCTGATAAATTTGAATCACA 1177642 29 100.0 42 TTGAATCACA ............................. CTTGTTCCTGATGTTTAGCGCCTTAAGCACGGAATCCTCAAC 1177713 29 100.0 37 AATCCTCAAC ............................. TTTTTCGAGTATACCAGTAAGTTCGGAACTGTGCAAA 1177779 29 100.0 39 ACTGTGCAAA ............................. CCACGTCCGTTCATAATCACCCCTAATAAGACCTACCGT 1177847 29 100.0 36 GACCTACCGT ............................. CTCGTCGTGCGAGCCGTGCGAGCTTGCTTCTGTCGT 1177912 29 100.0 CTTCTGTCGT ............................. CGGTCTTCCG ========== ====== ====== ====== ========== ============================= 28 29 37 GTTTGAACCCTACCTATAAGGAATGGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.07%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.00,-3.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [588,495] Score: 0/0.18 # # Final direction: R [0.27,0.37 Confidence: LOW] >NC_015707 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1182746 30 100.0 36 GAAAAAACGG .............................. AGTTCTTCTTCCAATGCCAATGCCGGAAGACTGTCC 1182812 30 100.0 36 AAGACTGTCC .............................. CAGCATACAGCATTGCACCAACAACATCGGAATCTG 1182878 30 100.0 37 TCGGAATCTG .............................. GCATACCAATTCACAAAACTTTGGTACTTTTCCAATT 1182945 30 100.0 36 TTTTCCAATT .............................. GGGAATGTGGTACAATTATTTATGAGCGCATAATTA 1183011 30 100.0 37 CGCATAATTA .............................. TGCCGTATTCGTTCATACCAACTATAATCCAGTCAAG 1183078 30 100.0 35 TCCAGTCAAG .............................. AATCCTGCCGGGACATATTCGCTTTTAACACCTAC 1183143 30 100.0 36 TAACACCTAC .............................. TTGTTTTAGCGCCCTGATTTTGGGCGCAGATTTAGT 1183209 30 100.0 35 CAGATTTAGT .............................. TTTTTTAGCATAAACATCACTTTCTAATAAAGAAA 1183274 30 100.0 AATAAAGAAA .............................. CTTTTCTTGA ========== ====== ====== ====== ========== ============================== 9 30 36 GTTTGGACACTACCTATGAGGAATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.00,-3.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [269,38] Score: 0.18/0.18 # # Final direction: F [0.45,0.37 Confidence: LOW] >NC_015707 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1183340 30 100.0 37 GTTTGCAAGA .............................. CCAGAAAAGCAGGAAGGCGTTTACTATATTGTATCGC 1183407 30 100.0 36 ATTGTATCGC .............................. TCGAAATCTGCAGAAAGGTTGTTTCTCGAGTAAGTG 1183473 30 100.0 41 CGAGTAAGTG .............................. TTTAAACATCCAATCGAGAAAAAACTTATCTTCCCAGTCGG 1183544 30 100.0 37 TCCCAGTCGG .............................. TTGAGTTCCTCGTCGTTTACAGAACCACTCACATCTA 1183611 30 100.0 36 CTCACATCTA .............................. TTGAGCGACCACGACGGAATGTGGAAATCTGTATAG 1183677 30 100.0 37 ATCTGTATAG .............................. CTCTATAAACAATTCAAAAACGAAATCCATCAATACC 1183744 30 100.0 36 CATCAATACC .............................. TATTAGAAAGTTGGTCGTGGTGTGATATAAGATATA 1183810 30 100.0 37 ATAAGATATA .............................. TTTTCAACCAACCAGACCGCAACCCGCTCGTTAATGC 1183877 30 96.7 36 TCGTTAATGC .................A............ GTTTCATACCTTTGACCTTTCCCGGAACACCATCGA 1183943 30 96.7 38 ACACCATCGA .................A............ TTCGTTTCCAGTACGAACCTGAACATCCTGAACCCCTG 1184011 30 96.7 36 TGAACCCCTG .................A............ CTTCTGAGATTTTGCGCCCGCCATGGGTATGGGGGG 1184077 30 96.7 35 GTATGGGGGG .................A............ GGGAATTTCTCCCTGGTATCTGTGACAAGTAAAAA 1184142 30 100.0 38 CAAGTAAAAA .............................. TAAGCCTCCTGCGGCTATTTCATCACCAATATTTTCAC 1184210 30 100.0 36 ATATTTTCAC .............................. ATACGCACTAACATTTTCCGCAATCCAATTTGTAAT 1184276 30 100.0 38 AATTTGTAAT .............................. AGTGATGATCGTATTGGTCCATACCACGGACAATTCAA 1184344 30 100.0 38 GACAATTCAA .............................. AGTAACGGATTGACAGATCCCAGCAGGGATCCACCCTG 1184412 30 100.0 37 ATCCACCCTG .............................. CGTGTGTCTGTATGCAGTAGATAGTACTTGGAAAGTT 1184479 30 100.0 39 TTGGAAAGTT .............................. GTTTCTACCAAATGGACCACAACCTGCTCGTTGAAGCAG 1184548 30 100.0 41 GTTGAAGCAG .............................. TACCGAAATAAGGTTCTCGGCGGCTTTGGCCGCGATTACCC 1184619 30 100.0 GCGATTACCC .............................. CCCAATTTAA ========== ====== ====== ====== ========== ============================== 20 30 37 GTTTGAACCCTACCTATGAGGAATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.00,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [61.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [36,603] Score: 0.18/0.18 # # Final direction: R [0.27,0.55 Confidence: MEDIUM] >NC_015709 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1310992 29 100.0 32 NNNNNNNNNN ACCA.A........C.CA..A........ TGCCGAACATGACAGAAACCCGCTTCCCCCAA 1311053 29 100.0 32 NNNNNNNNNN ........T.................... GCCACGTGGCAGGGGTGCAGATCATGGGTTCG 1311114 29 100.0 32 NNNNNNNNNN .................A........... TATTGTTCGCGATGTGATGAAATGAGCCAAGA 1311175 29 100.0 32 NNNNNNNNNN .................A........... TTTCATCATTTTGGATTTAAAGAATGTCCACG 1311236 29 100.0 32 NNNNNNNNNN ............................. ACGTCCGGATCAAAAGCAACAACCGCCATTTT 1311297 29 100.0 32 NNNNNNNNNN T............................ TCCTGCCAGCGCTGAACAATGGCACGACGAAG 1311358 29 100.0 32 NNNNNNNNNN ............................. CTGTTCCGGTATCAATTAGCCCAGACATAACC 1311419 29 100.0 32 NNNNNNNNNN ............................. AGATGGTCTTTGATATGAATTCGATGCTTGAT 1311480 29 100.0 32 NNNNNNNNNN ............................. ATATCGAGCAACGCCGAAATTCATTCAAACGG 1311541 29 100.0 32 NNNNNNNNNN ............................. ATCCTGCCCATCAGAGCGAGATAAGGTAATTC 1311602 29 100.0 32 NNNNNNNNNN ............................. CGGCATCCATAATCCCTTCTTTTTTCGCGTGG 1311663 29 100.0 32 NNNNNNNNNN ............................. GTCATAATTTGGAATTAATCTATCTATTTTTT 1311724 29 100.0 32 NNNNNNNNNN ............................. GTCATAATTTGGAATTAATCTATCTATTTTTT 1311785 29 100.0 32 NNNNNNNNNN ............................. GATTGATAATAACACCGTCAGGATTGCGTAGC 1311846 29 100.0 32 NNNNNNNNNN ............................. CTTTCTGCTGAAATCGGCAAAGTCTCGGAAGC 1311907 29 100.0 32 NNNNNNNNNN ............................. ATTGATAGTCCGAGCGATTAGTGCTGCGGGGG 1311968 29 100.0 32 NNNNNNNNNN ............................. AGCGCCAGTCGGTGCATTGAAATCGAGATTTC 1312029 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 18 29 32 CGGTTCATCCCCGCGTGGGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [4,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-13.50,-12.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [972,145] Score: 0.18/0.18 # # Final direction: F [0.55,0.41 Confidence: LOW] >NC_015707 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1714941 30 100.0 37 TAAACAAAGG .............................. ATGTGCGTGAATTTCCACGCCACTTTACTGCCTCCTG 1715008 30 100.0 37 CTGCCTCCTG .............................. CGCTTGTTGGTATACAACAGACTCAAATGCTGGCATG 1715075 30 100.0 36 TGCTGGCATG .............................. CGGTTATAGTGCGCCGGGCAGGTATACGGTATCGAT 1715141 30 100.0 38 CGGTATCGAT .............................. CAGGTTGCCTACCGAAGTGTATGGACACATTGAATTGT 1715209 30 100.0 36 ATTGAATTGT .............................. TGCTAAGTGCGCTTGAAAAAATTTATATGAATTTAA 1715275 30 100.0 37 ATGAATTTAA .............................. CTCAAGAAGACACAACATTGTTTGTTGCAGCCTGCAC 1715342 30 100.0 36 CAGCCTGCAC .............................. ACGCCTTTTTCAAATGTTTTCTTCTCATTCCTTGGC 1715408 30 100.0 37 ATTCCTTGGC .............................. ATGTGTGTAGTCGATCTTATTGTCCGAAAGCCACCTT 1715475 30 100.0 37 AAGCCACCTT .............................. CGACTATGATACGTACTTGTTCGTTTTGGCTAAAGAA 1715542 30 100.0 36 GGCTAAAGAA .............................. CCGTTCCTTCATGATTACCTCTAAAAACTCCCACTC 1715608 30 100.0 36 ACTCCCACTC .............................. ACTTTAACCTTCCTTTTACATTTCATTAACCCAAAT 1715674 30 100.0 37 TAACCCAAAT .............................. GATTTTTTTTGAGGACATTAATCATACCCCCTTGTAA 1715741 30 100.0 36 CCCCTTGTAA .............................. GGAGCATAAATACTGCTTTTTCGAGGTTGTACATTC 1715807 30 100.0 36 TTGTACATTC .............................. TATACTTCTTCTTCAACGAAGTCGTAAGATCCTACA 1715873 30 100.0 37 AGATCCTACA .............................. GGCGACTTAGTAGCACAACTAGAATACTTAGATAGAG 1715940 30 100.0 36 TTAGATAGAG .............................. TAGTTCAAAACGTGTTATTCCGGATCGTAATTCTTT 1716006 30 100.0 37 GTAATTCTTT .............................. CTTTTTCAAGAGATTAAGCAACTGCAGGAAGAAGTTC 1716073 30 100.0 37 GAAGAAGTTC .............................. ACCAGTCTGCGCTGCACGGAAAATCGATATAATCTTC 1716140 30 100.0 37 TATAATCTTC .............................. AAATGTGATTGAAATAAGGGAGGCGTGAGCCTCCCTT 1716207 30 100.0 37 AGCCTCCCTT .............................. ACGATTCTGTAACTTGACAAGTTATAGATAAGGTATA 1716274 30 100.0 36 ATAAGGTATA .............................. CATAGCCCCTTGTCACTTATCGCCAATATTTTTTTA 1716340 30 100.0 36 TATTTTTTTA .............................. TATTGTCTGCAAGATATTACATGGCACAAGCTTGCC 1716406 30 100.0 37 CAAGCTTGCC .............................. GCGTGCCTATGCTGTTGAAGCTCAGCCACGAATAGTG 1716473 30 100.0 36 ACGAATAGTG .............................. AATGGCATTTGCTCGGTTTCTCCTTCTCCGAATACC 1716539 30 100.0 37 TCCGAATACC .............................. GATTTTCTTTGAGGACATTAATCATACCCCCTTGTAA 1716606 30 100.0 36 CCCCTTGTAA .............................. CCTTGCCGGTGTAGAGAACCGCTTTTCGGTCTAAAT 1716672 30 100.0 36 CGGTCTAAAT .............................. CCGTGTTTGGTAGCTTGCCATATTGAAGCTCAAGGT 1716738 30 100.0 36 AGCTCAAGGT .............................. TTGGCACAATGTAACACCTTACCGTTCCGCTGCGTT 1716804 30 100.0 36 CCGCTGCGTT .............................. ACCATTTCGTTTCCAACATTTTACTTTTTCTTAACA 1716870 30 100.0 37 TTTCTTAACA .............................. AATCGTGGCCGCATATGCACATGTCATTGAGGGAACA 1716937 30 100.0 37 TGAGGGAACA .............................. TGAACCTGATTTACTTTATGGTACTGATCGGCGTTAA 1717004 30 100.0 37 TCGGCGTTAA .............................. TTGCGTGTTCTCTCGAATACATTTGCGCTATTACGAT 1717071 30 100.0 36 CTATTACGAT .............................. CTAGAACCTAATGTTGAAAGAGATGTGTGCTTCTGG 1717137 30 100.0 36 GTGCTTCTGG .............................. CAAACCACCGGTGGCTTAAGTCCCCTTGCAACTAAC 1717203 30 100.0 37 TGCAACTAAC .............................. GTTTCGAGCAGAAATATGTCTACCCGCTCCGCTACCC 1717270 30 100.0 37 TCCGCTACCC .............................. CAGTGATCCCAAGCGAGTAATCGTGACAACATGTTCA 1717337 30 100.0 36 AACATGTTCA .............................. TTCTGCTCAAGCCACTTTTCTGTCGAAAGGTGGCGC 1717403 30 100.0 36 AAGGTGGCGC .............................. ACATTTGCAGAAATGCGATACGAAATAAGAGACGGA 1717469 30 100.0 35 AAGAGACGGA .............................. CAGACGGGGTGAAAAAGAGGAGGGGTTTAGATGTA 1717534 30 96.7 TTTAGATGTA .............................A TATTTTGGA ========== ====== ====== ====== ========== ============================== 40 30 36 GTTTCAATCGAACTTAAGAGGGATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [432,289] Score: 0/0.18 # # Final direction: R [0.41,4.5 Confidence: HIGH] >NC_015709 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1188330 29 96.6 32 GAGCGCTTAA -............................ AATGATCCTGAAGGCACGCCAGATTGGTGCAA 1188391 29 100.0 32 ATTGGTGCAA ............................. TGTACGCGGGCAAAGCATGAAGCAATCTCCTA 1188452 29 100.0 32 CAATCTCCTA ............................. GAAAAACGTTAATCAGTATGTGTTAATTGCGT 1188513 29 100.0 32 TTAATTGCGT ............................. AAGGTACGGGAAAGTCTCATGTTATCGCGGCG 1188574 29 100.0 32 TATCGCGGCG ............................. TGCGACACGGACAACGATAACTGGCGTTGAGA 1188635 29 100.0 32 GGCGTTGAGA ............................. GCTGAAAAATAATCGTAAATATGTCGTTTTTT 1188696 29 100.0 32 GTCGTTTTTT ............................. GGACAGGCAACGGAACCGCATCCGACAGCCTG 1188757 29 100.0 32 CGACAGCCTG ............................. GTAGCAAGCACTGGAATTGGATTATACAAAAC 1188818 29 100.0 32 TATACAAAAC ............................. TCTCACTGACTGGCCACCCTTGCCAGTAGAGA 1188879 29 100.0 32 CCAGTAGAGA ............................. ACGTGCGAATACCGGAACTAGAGTTTTAGGAT 1188940 29 100.0 32 GTTTTAGGAT ............................. ATCAATGAGATGGTTGGAAGAACTATCATCGA 1189001 29 100.0 CTATCATCGA ............................. TCATCCTTGT ========== ====== ====== ====== ========== ============================= 12 29 32 CGGTTCATCCCCGCGTGGGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [4,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-13.50,-12.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [35,87] Score: 0.18/0.18 # # Final direction: R [0.37,0.59 Confidence: LOW] >NC_015711 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2377930 36 100.0 37 CAGACGGGCT .................................... TCAACCAGCATTAGCACCGTCCGCGTGGCGCCCGTGT 2378003 36 100.0 38 GCGCCCGTGT .................................... CTGGAGTTGTCCCCCGAGGCTGAGCCGGTGTCCCGCGT 2378077 36 100.0 37 TGTCCCGCGT .................................... TCTTCCATCTGCGTCTGCGTCTGACCCTTGAACTTCG 2378150 36 100.0 35 TTGAACTTCG .................................... ATGCAGAACAGCGGCAAGGAGGCGATTATCGACCT 2378221 36 100.0 40 TTATCGACCT .................................... GGGCAGTGAAACCCTTGGGTGGGGAAGGAGTTCTGGGGGC 2378297 36 100.0 35 TTCTGGGGGC .................................... AGGAGCGCCCGCCGGCCAGACGCATAGACGACGCA 2378368 36 100.0 33 AGACGACGCA .................................... CGGAAGCTGCGCGGTTGCGTCCACGGCCCGCCC 2378437 36 100.0 35 CGGCCCGCCC .................................... AACACTTCGTTGATCCGTGCATTCTTGTATGCCAG 2378508 36 100.0 39 TGTATGCCAG .................................... GGCGAAGGCGACGCTGGACCGAATGGACGGCGAGCGCGA 2378583 36 100.0 35 GCGAGCGCGA .................................... TCCCCCCACCGTCCGGCCCGGCCCAGGCCCCAGCA 2378654 36 100.0 37 GGCCCCAGCA .................................... TGTCGCGGTACGTCTGGCTTGACTTGGGCAGCACGTT 2378727 36 100.0 35 GCAGCACGTT .................................... CTCAGGCAGCTTGCTCACATCCAGCTGTGCCTTCG 2378798 36 100.0 34 TGTGCCTTCG .................................... CCCAGGCGCACCCGCTCGGCCCGCTCGTCGCTGT 2378868 36 100.0 35 TCGTCGCTGT .................................... TCCCCCCACCGTCCGGCCCGGCCCAGGCCCCAGCA 2378939 36 100.0 37 GGCCCCAGCA .................................... TGTCGCGGTACGTCTGGCTTGACTTGGGCAGCACGTT 2379012 36 100.0 37 GCAGCACGTT .................................... TGTCGCGGTACGTCTGGCTTGACTTGGGCAGCACGTT 2379085 36 100.0 35 GCAGCACGTT .................................... CTCAGGCAGCTTGCTCACATCCAGCTGTGCCTTCG 2379156 36 100.0 70 TGTGCCTTCG .................................... CCCAGGCGCACCCGCTCGGCCCGCTCGTCGCACTGTCGCGGTACGTCTGGCTTGACTTGGGCAGCACGTT 2379262 36 100.0 37 GCAGCACGTT .................................... TGTCGCGGTACGTCTGGCTTGACTTGGGCAGCACGTT 2379335 36 100.0 GCAGCACGTT .................................... CTACTATGCC ========== ====== ====== ====== ========== ==================================== 20 36 37 GTCCCGCTCGCCGTGATGCCGGAAGGCGTTGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [43.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [262,617] Score: 0.18/0.18 # # Final direction: F [0.64,0.55 Confidence: LOW] >NC_015711 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2680594 37 100.0 35 GAAGGGCAGG ..................................... CTCTTGCAGATGATGCAGTGGGCGGTGGCGGGCTT 2680666 37 100.0 33 TGGCGGGCTT ..................................... TCTGGATGCGGAGCCGCTGGCATGACGTAGGCC 2680736 37 100.0 35 GACGTAGGCC ..................................... CTCTTGCAGATGATGCAGTGGGCGGTGGCGGGCTT 2680808 37 100.0 33 TGGCGGGCTT ..................................... TCTGGATGCGGAGCCGCTGGCATGACGTAGGCC 2680878 37 100.0 34 GACGTAGGCC ..................................... CGGTCGGCGTCCCACACGTAGTCGTGCCACCACC 2680949 37 100.0 32 TGCCACCACC ..................................... ACCGTCACCGAGGTTATCCCACCGCTCCCCAC 2681018 37 100.0 34 CGCTCCCCAC ..................................... GCGGGAATCATTACCGACCCGCATGGTGTCCCGG 2681089 37 100.0 32 GGTGTCCCGG ..................................... GCAACATCCAGGTGAAGCCCGGCGCGGAAATC 2681158 37 100.0 34 CGCGGAAATC ..................................... AAGATGACGACACCGCAGCGGGCGCACGTCTGCT 2681229 37 100.0 36 CACGTCTGCT ..................................... CTTCCACCACTGCCAATGCGCCGCTGGGCACCATTC 2681302 37 97.3 34 GGCACCATTC ........T............................ GCGTCGGCCTCCAGCGAGTCGGGCAGCAGGAGAA 2681373 37 100.0 35 AGCAGGAGAA ..................................... TGGTGGATGTGGTGGTTCGACGCGTCCGGCACCCG 2681445 37 100.0 35 CCGGCACCCG ..................................... GTAATCATCCGCTGGCCGCCGCCCTTCCAGCGCAG 2681517 37 100.0 32 TCCAGCGCAG ..................................... CGCAACACGCCGATCCTCACGCTCGCGAAGAA 2681586 37 100.0 36 TCGCGAAGAA ..................................... GCTTCCTGCGAGACAACGACTCGGACCCGATCCCCA 2681659 37 100.0 35 CCGATCCCCA ..................................... CAGCTCCAGCGCACCGTCCGGTTATCGCTCCGGCG 2681731 37 100.0 37 CGCTCCGGCG ..................................... GGTGGCGGCACCCGCCACCTGGGCGACGCTGGAAATG 2681805 37 100.0 34 GCTGGAAATG ..................................... CGTGGTTTCGGGGCGGCGGCAGGTGGCTCCCGAC 2681876 37 100.0 34 GGCTCCCGAC ..................................... GCGCGATAGACGCTCATGGCCGTCTCGTCGTGGT 2681947 37 100.0 TCGTCGTGGT ..................................... GCGGGCGGTC ========== ====== ====== ====== ========== ===================================== 20 37 34 GTCGCTCCCCGTGAACGCGGGGAGCGTGGGTTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [6,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-12.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [40.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [184,1388] Score: 0.18/0.18 # # Final direction: F [0.64,0.18 Confidence: MEDIUM] >NC_015711 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2682550 37 100.0 35 ACCACGGCCT ..................................... CCTCCTCCTGGAGGGCGGGGTGAATAGCCTGCGCG 2682622 37 100.0 32 AGCCTGCGCG ..................................... GCAACATCCAGGTGAAGCCCGGCGCGGAAATC 2682691 37 100.0 33 CGCGGAAATC ..................................... TTCGAACTGCGCGACCGGCGCGTGCAGTTCACC 2682761 37 100.0 32 GCAGTTCACC ..................................... GCAACATCCAGGTGAAGCCCGGCGCGGAAATC 2682830 37 100.0 34 CGCGGAAATC ..................................... GCGTCGGCCTCCAGCGAGTCGGGCAGCAGGAGAA 2682901 37 100.0 AGCAGGAGAA ..................................... TGGTGGATGT ========== ====== ====== ====== ========== ===================================== 6 37 33 GTCGCTCCCCGTGAACGCGGGGAGCGTGGGTTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [6,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-12.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [31.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2140,434] Score: 0.18/0.18 # # Final direction: F [0.82,0 Confidence: HIGH] >NC_015711 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2683776 37 100.0 36 NNNNNNNNNN ..................................... CTTCCACCACTGCCAATGCGCCGCTGGGCACCATTC 2683849 37 100.0 34 NNNNNNNNNN ........T............................ GCGTCGGCCTCCAGCGAGTCGGGCAGCAGGAGAA 2683920 37 100.0 32 NNNNNNNNNN ..................................... GCCATGCAGTGGCTGGAGGAGTTCGTCCTGCC 2683989 37 100.0 34 NNNNNNNNNN ..................................... CCTCGCCACCCTCCGCCAAATTTGCCACCGCGTG 2684060 37 100.0 32 NNNNNNNNNN ..................................... ACCGTGGACGGCCGCAACTGGCTGCCCTGCAC 2684129 37 100.0 35 NNNNNNNNNN ..................................... AAGTCTTCCGTGTTCTCCATGTCGCTTCCCGCCTG 2684201 37 100.0 37 NNNNNNNNNN ..................................... CCATGACGCTGCCCCTCTCGCGGGCCTCGAGCCCGAT 2684275 37 100.0 35 NNNNNNNNNN ..................................... ACCACCTTGTCGCTTTGGTGGTCGGCGTAGTGGAT 2684347 37 100.0 32 NNNNNNNNNN ..................................... GTCACCCACAGCCTGCCCAGCGGCGCCACCTG 2684416 37 100.0 33 NNNNNNNNNN ..................................... ACCCTGGAGGTCGTAGGTCGAACTTCAAGCCGA 2684486 37 100.0 34 NNNNNNNNNN ..................................... AAGGCGACCGTCCGCGCGCTGTCCACCACGGCCT 2684557 37 100.0 35 NNNNNNNNNN ..................................... CCTCCTCCTGGAGGGCGGGGTGAATAGCCTGCGCG 2684629 37 100.0 33 NNNNNNNNNN ..................................... TTCGAACTGCGCGACCGGCGCGTGCAGTTCACC 2684699 37 100.0 35 NNNNNNNNNN ..................................... TGGCACTGCCGCTTGACCTCCGCAGGCTTGAAGGT 2684771 37 100.0 32 NNNNNNNNNN ..................................... ACCGTCACCGAGGTTATCCCACCGCTCCCCAC 2684840 37 100.0 32 NNNNNNNNNN ..................................... ACCGTCACCGAGGTTATCCCACCGCTCCCCAC 2684909 37 100.0 32 NNNNNNNNNN ..................................... ACCGTCACCGAGGTTATCCCACCGCTCCCCAC 2684978 37 100.0 32 NNNNNNNNNN ..................................... ACCGTCACCGAGGTTATCCCACCGCTCCCCAC 2685047 37 100.0 32 NNNNNNNNNN ..................................... ACCGTCACCGAGGTTATCCCACCGCTCCCCAC 2685116 37 100.0 32 NNNNNNNNNN ..................................... ACCGTCACCGAGGTTATCCCACCGCTCCCCAC 2685185 37 100.0 34 NNNNNNNNNN ..................................... AAGGCGACCGTCCGCGCGCTGTCCACCACGGCCT 2685256 37 100.0 35 NNNNNNNNNN ..................................... CCTCCTCCTGGAGGGCGGGGTGAATAGCCTGCGCG 2685328 37 100.0 33 NNNNNNNNNN ..................................... TTCGAACTGCGCGACCGGCGCGTGCAGTTCACC 2685398 37 100.0 35 NNNNNNNNNN ..................................... TGGCACTGCCGCTTGACCTCCGCAGGCTTGAAGGT 2685470 37 100.0 33 NNNNNNNNNN ..................................... CCCTGACGCTGCCCCTCTCGCGGGCCTCGGGCC 2685540 37 100.0 34 NNNNNNNNNN ..................................... AGCGGGCCGAACATCGCCCGGCTGCCGGGCGCTT 2685611 37 100.0 32 NNNNNNNNNN ..................................... ACCGTCACCGAGGTTATCCCACCGCTCCCCAC 2685680 37 100.0 34 NNNNNNNNNN ..................................... GCGGGAATCATTACCGACCCGCATGGTGTCCCGG 2685751 37 100.0 32 NNNNNNNNNN ..................................... GCAACATCCAGGTGAAGCCCGGCGCGGAAATC 2685820 37 100.0 34 NNNNNNNNNN ..................................... AAGATGACGACACCGCAGCGGGCGCACGTCTGCT 2685891 37 100.0 36 NNNNNNNNNN ..................................... CTTCCACCACTGCCAATGCGCCGCTGGGCACCATTC 2685964 37 100.0 34 NNNNNNNNNN ........T............................ GCGTCGGCCTCCAGCGAGTCGGGCAGCAGGAGAA 2686035 37 100.0 35 NNNNNNNNNN ..................................... TGGTGGATGTGGTGGTTCGACGCGTCCGGCACCCG 2686107 37 100.0 35 NNNNNNNNNN ..................................... GTAATCATCCGCTGGCCGCCGCCCTTCCAGCGCAG 2686179 37 100.0 32 NNNNNNNNNN ..................................... CGCAACACGCCGATCCTCACGCTCGCGAAGAA 2686248 37 100.0 36 NNNNNNNNNN ..................................... GCTTCCTGCGAGACAACGACTCGGACCCGATCCCCA 2686321 37 100.0 35 NNNNNNNNNN ..................................... CAGCTCCAGCGCACCGTCCGGTTATCGCTCCGGCG 2686393 37 100.0 34 NNNNNNNNNN ..................................... GCGGGCGGTCGATGAACACCTGATTGCCGAACCC 2686464 37 100.0 34 NNNNNNNNNN ..................................... CGGTCTCCCTTCGCGGTCCGGAGGAGAAGGGGCC 2686535 37 100.0 32 NNNNNNNNNN ..................................... ATAGGGCCTGGGGAGCCATGGGCCCTTGAAGC 2686604 37 100.0 32 NNNNNNNNNN ..................................... ATAGGGCCTGGGGAGCCATGGGCCCTTGAAGC 2686673 37 100.0 32 NNNNNNNNNN ..................................... ATAGGGCCTGGGGAGCCATGGGCCCTTGAAGC 2686742 37 100.0 32 NNNNNNNNNN ..................................... ATAGGGCCTGGGGAGCCATGGGCCCTTGAAGC 2686811 37 100.0 34 NNNNNNNNNN ..................................... CGTGGTTTCGGGGCGGCGGCAGGTGGCTCCCGAC 2686882 37 100.0 34 NNNNNNNNNN ..................................... GCGCGATAGACGCTCATGGCCGTCTCGTCGTGGT 2686953 37 100.0 34 NNNNNNNNNN .....................T............... GCGCGATAGACGCTCATGGCCGTCTCGTCGTGGT 2687024 37 100.0 34 NNNNNNNNNN .....................T............... GCGCGATAGACGCTCATGGCCGTCTCGTCGTGGT 2687095 37 100.0 35 NNNNNNNNNN ..................................... ACATGGCTGACGGGCTTGCGCCGGACGCGGTTGTC 2687167 37 100.0 32 NNNNNNNNNN ..................................... ATAGGGCCTGGGGAGCCATGGGCCCTTGAAGC 2687236 37 100.0 33 NNNNNNNNNN ..................................... CGCCGACCGGGAGCGGGCCATGGAAATCCTGGT 2687306 37 100.0 33 NNNNNNNNNN ..................................... CGCCGACCGGGAGCGGGCCATGGAAATCCTGGT 2687376 37 100.0 33 NNNNNNNNNN ..................................... CGCCGACCGGGAGCGGGCCATGGAAATCCTGGT 2687446 37 100.0 33 NNNNNNNNNN ..................................... CGCCGACCGGGAGCGGGCCATGGAAATCCTGGT 2687516 37 100.0 33 NNNNNNNNNN ..................................... CGCCGACCGGGAGCGGGCCATGGAAATCCTGGT 2687586 37 100.0 33 NNNNNNNNNN .....................T............... GGCATCAGCAACGCCCGGTGCTCCTCGAATGCG 2687656 37 100.0 36 NNNNNNNNNN ..........A.....................A.... GTCCTCTGCGCGTTTGACGTAGCCCAGCACCTTGCC 2687729 37 100.0 36 NNNNNNNNNN .....................T.......A....... ACCCGTGCCAGCGTCGAGGCCCGCCTGGGCGGGTAC 2687802 37 100.0 36 NNNNNNNNNN ................................A.... GTCCTCTGCGCGTTTGACGTAGCCCAGCACCTTGCC 2687875 37 100.0 37 NNNNNNNNNN ..................................... CGAGTGAGCATTGCCACAGGTCTCTGTTTGTCAGTGA 2687949 37 100.0 1 NNNNNNNNNN C..A..T.T......T...A....T............ NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 60 37 33 GTCGCTCCCCGTGAACGCGGGGAGCGTGGGTTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [6,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-12.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [35.0-35.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [27,368] Score: 0.18/0.18 # # Final direction: F [0.78,0.18 Confidence: MEDIUM] >NC_015715 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 11752 32 100.0 33 TATCGGAGTT ................................ CCCTATGCTGATTTCAAGCGAGCTGCATCCAAA 11817 32 100.0 35 TGCATCCAAA ................................ TTGGCCAAAGGCAGAGTTTTAGAAAACACATCACG 11884 32 100.0 34 ACACATCACG ................................ GACGACCTCCATTTTTCACGGGTTATCCATAACA 11950 32 100.0 35 ATCCATAACA ................................ ATCGGTGATATTAAGGCGACCCTTGACCATTGAAG 12017 32 100.0 33 ACCATTGAAG ................................ TAATCGCAGCCCGTTCCTCGCCATGCTTCGATA 12082 32 100.0 34 TGCTTCGATA ................................ TTTAAGGTGACGCTCTCGGTGCGGTCAGTGGGTG 12148 32 100.0 33 TCAGTGGGTG ................................ ATTGATGGATAATGCTTCTTGACGCTTAACCTC 12213 32 100.0 34 GCTTAACCTC ................................ CCTCAAAACTAAGAAAGGTTTTATTAATGTCTTG 12279 32 100.0 34 TAATGTCTTG ................................ ATGCGTTCTGGATTGCGATCACTAGAAACGGTTT 12345 32 100.0 34 GAAACGGTTT ................................ ATATGTCGCTGTATGGATTAATGGGCTGTTTGGG 12411 32 100.0 34 GCTGTTTGGG ................................ AACGGGATTGTTTTTCAGTGTTTATTTAATCCGA 12477 32 100.0 35 TTTAATCCGA ................................ CACGATTTGCCTACGAATTGAGTTTCAATAATATT 12544 32 100.0 34 CAATAATATT ................................ AATAACTACCACTGATAATCAACCCAAACTATAT 12610 32 100.0 34 CAAACTATAT ................................ CGAATCTGGGACACAATGCCCCTCATTGATCTTA 12676 32 100.0 33 ATTGATCTTA ................................ ATTCATGACAACAAAAGCGCAAGCATCATGAGA 12741 32 100.0 35 CATCATGAGA ................................ GCCTCGTCTTTCACGGCCTTGGCGGCTTTATCATC 12808 32 100.0 CTTTATCATC ................................ CGCCCCTATT ========== ====== ====== ====== ========== ================================ 17 32 34 GTTTCAATCCACGCCTCCGCGAAGGAGGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [7,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2091,212] Score: 0.18/0.18 # # Final direction: R [0.55,5.14 Confidence: HIGH] >NC_015732 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================= ====== 2131097 33 100.0 35 NNNNNNNNNN ................................. AAGACAACGTCTGTCCTAACCTTTATGGCTTCGGC 2131165 33 100.0 37 NNNNNNNNNN ................................. GTGCCTTGCTTTTTCCATTAACTGTTCATCAGTTAAT 2131235 33 100.0 34 NNNNNNNNNN ................................. CGACGAGATAGACGTAATAGTCCTTCCCAACCTC 2131302 33 100.0 34 NNNNNNNNNN ................................. TAGCATACTCTTCTCCTCTCCTTACCCGAGTTGG 2131369 33 100.0 34 NNNNNNNNNN ................................. TTATATAAGTTTCCATCCATCGTACGGAGACGAT 2131436 33 100.0 34 NNNNNNNNNN ................................. CGTGGTTTCACTTTATATTGCCTACACAATCTAT 2131503 33 100.0 34 NNNNNNNNNN ................................. ATAAAACTAAATTATCGTCGCTATATACTGGATT 2131570 33 100.0 34 NNNNNNNNNN ................................. TCCCACACACGGGCCCACTGAACATCTTTTGGAA 2131637 33 100.0 34 NNNNNNNNNN ................................. CCTTGCTTTTTCCATTAACTGTTCATCAGTTAAT 2131704 33 100.0 36 NNNNNNNNNN ................................. ACTTTCCTCCTTGCAAATTATCCGTGTAGTGGTCGT 2131773 33 100.0 34 NNNNNNNNNN ................................. AAGCAGTTGTTAGGCTTTTTCATTCAACAAAGGC 2131840 33 100.0 34 NNNNNNNNNN ................................. GGAAATTTTAATGGTGCCCAGCTGCTCGCTGGGT 2131907 33 100.0 36 NNNNNNNNNN ................................. ATGCTGTGGTGGAAAACGCGCTGATAGATAAGGCCA 2131976 33 100.0 35 NNNNNNNNNN ................................. AACCCTTCCGGGGCTCCAGGCGTGTTCATTGGGGC 2132044 33 100.0 35 NNNNNNNNNN ................................. CTGCTGGGCGCCAGGCTCAGCCCAAGATACAGCCA 2132112 33 100.0 35 NNNNNNNNNN ................................. TGATACTTATCTGTCGTCCATATCACGACACCGTC 2132180 33 100.0 33 NNNNNNNNNN ................................. CCAGTTTTTTAGGAGGAGCAATCCCTCCGTTGC 2132246 33 100.0 34 NNNNNNNNNN ................................. ATTCGTTTTTGGGGTCCCAGTCACCACCCCATTC 2132313 33 100.0 35 NNNNNNNNNN ................................. CTGGATTACCGGCGCAGCGGCCGGCAATCCAAAAA 2132381 33 100.0 34 NNNNNNNNNN ................................. GGCGGGATAACGATTTAGCTTTTTAGCATTGGTT 2132448 33 100.0 35 NNNNNNNNNN ................................. CAGGTGTATAAAAAAGTATACACCTACTGTATGAA 2132516 33 100.0 35 NNNNNNNNNN ................................. AAAATCATATATTGCTAAACAATCAATTAACCGGC 2132584 33 100.0 34 NNNNNNNNNN ................................. GGGCGTAGGAGGGCGTATGCCTAACGATAACAAC 2132651 33 100.0 34 NNNNNNNNNN ................................. GGGCGTAGGAGGGCGTATGCCTAACGATAACAAC 2132718 33 100.0 34 NNNNNNNNNN ................................. GCCTTTATAATGCAACGACATAGCGCAGGTGTAT 2132785 33 100.0 34 NNNNNNNNNN ................................. ATAGTATACTATACATATGTTAAGTACGGTTAAT 2132852 33 100.0 34 NNNNNNNNNN ................................. AATATTTGGCAACAGTTAACGTGACATTTTTTGT 2132919 33 100.0 35 NNNNNNNNNN ................................. GTGCTATGTCGTTGCAGTATAAAGGTTTCCAGAGG 2132987 33 100.0 35 NNNNNNNNNN ................................. GCTGGATTACCGGCGCAGCGGCCGGCAATCCAAAA 2133055 33 100.0 35 NNNNNNNNNN ................................. GGGCAATGGAGGGCGTTATGAAAGGTACTATTCAG 2133123 33 100.0 35 NNNNNNNNNN ................................. CTACCTCTATATCCTGCAATGATTTATTTTTTGGA 2133191 33 100.0 34 NNNNNNNNNN ................................. ACCTTGAGGACTACGAGTGCGACTTGCGGCGTAC 2133258 33 100.0 35 NNNNNNNNNN ................................. AATATTTGGCAACAGTTAACGTGACATTTTTTGTT 2133326 33 100.0 34 NNNNNNNNNN ................................. CGATTTAGATTTTTAGCATTAGTTGAAATCCAAA 2133393 33 100.0 36 NNNNNNNNNN ................................. CGGCACCACGGTCGGTTCCATAGCCGCCGGGATGCT 2133462 33 100.0 35 NNNNNNNNNN ................................. GATCTTGTTCACTCGTGAAGGCCGCCTTGCTGATA 2133530 33 100.0 35 NNNNNNNNNN ................................. GTCCAAGGGCTGGGCGAGCGGTAAAAAGGTTACGA 2133598 33 100.0 1 NNNNNNNNNN ................................. NNNNNNNNNN ========== ====== ====== ====== ========== ================================= 38 33 34 GTTTCAATCCACGCCCCCCGAGCGGGGAGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [6,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.00,-9.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [102,206] Score: 0.18/0.18 # # Final direction: R [0.37,5.32 Confidence: HIGH] >NC_015732 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================= ====== 2125870 33 100.0 34 NNNNNNNNNN ................................. TCAATCAATCATTGATAGATTGATTGATTGAGAA 2125937 33 100.0 34 NNNNNNNNNN ................................. TAAAGTTTTATCGGCATGCAAGGACCGGTCCGAT 2126004 33 100.0 33 NNNNNNNNNN ................................. ATACGTTATATGGACGACTTCATTGTCTTAAAT 2126070 33 100.0 34 NNNNNNNNNN ................................. ATTAACGACGAAGGAGTGTTATGGCTTATTGACG 2126137 33 100.0 35 NNNNNNNNNN ................................. GAACAGTTGAGGTAATATCGGCTGATCTTGTTTAT 2126205 33 100.0 34 NNNNNNNNNN ................................. CGGTAGTATCGGCGGAGTATGACGGTACCGTATG 2126272 33 100.0 35 NNNNNNNNNN ................................. TATACACCTTAATAATAAATGTTAAGATGTATGAA 2126340 33 100.0 36 NNNNNNNNNN ................................. ATGTAGACAGTATAAGGTAAAACCTAGGGAATTGTT 2126409 33 100.0 35 NNNNNNNNNN ................................. AACCTTTATACCGCAACGACATAGCATAGGTGTAT 2126477 33 100.0 35 NNNNNNNNNN ................................. GGTTCAGCGCCTACATAGTAGGCGCTGAAAGGAGT 2126545 33 100.0 34 NNNNNNNNNN ................................. CATCGATAGCTCAAGCTTATCAACGGCGCATCCT 2126612 33 100.0 34 NNNNNNNNNN ................................. GTCCCTACACTCCCTTAGCACTTTATCGGCAAGC 2126679 33 100.0 34 NNNNNNNNNN ................................. TTGCTCCGGTTGTCGGTATGCACAAGCCTCGCTT 2126746 33 100.0 34 NNNNNNNNNN ................................. ACTTTATCGGCAAGCATTGCCTTGCTTGCCGATA 2126813 33 100.0 37 NNNNNNNNNN ................................. AAGATATTCCTCATATTCCCGCAAGGCTTGTTTGCGG 2126883 33 100.0 33 NNNNNNNNNN ................................. CGGCTATGCAAGCGGTATCGTATCAAACCTAGG 2126949 33 100.0 35 NNNNNNNNNN ................................. GGTTCAGCGCCTACATAGTAGGCGCTGAAAGGAGT 2127017 33 100.0 35 NNNNNNNNNN ...................CGAGC...GAGCGA CCATCGATAGCTCAAGCTTATCAACGGCGCATCCT 2127085 33 100.0 35 NNNNNNNNNN ................................. CTGTAATTCTTTGGGCTTCACTTTGTACTTTTTGC 2127153 33 100.0 34 NNNNNNNNNN ................................. CTGACGAGCAAGCAGTATCAAAGCAGATCGATGC 2127220 33 100.0 34 NNNNNNNNNN ................................. TGTAATTCTTTGGGCTTCACTTTGTACCTTTTGC 2127287 33 100.0 35 NNNNNNNNNN ................................. CATAGCATGCTATACATACGTTAAGTATAGCTGAT 2127355 33 100.0 34 NNNNNNNNNN ................................. TTTTTATCAGAAACGTGGTTTAGTAGTTTCGGAC 2127422 33 100.0 34 NNNNNNNNNN ................................. TAATATATAGTATCGGTATTACATAGTTGCCGAT 2127489 33 100.0 35 NNNNNNNNNN ................................. AAGAATGGACTTTACAGGACTTGCTTTTCTACTTA 2127557 33 100.0 35 NNNNNNNNNN ................................. CTGTAATTCTTTGGGCTTCACTTTGTACTTTTTGC 2127625 33 100.0 34 NNNNNNNNNN ................................. CTGACGAGCAAGCAGTATCAAAGCAGATCGATGC 2127692 33 100.0 33 NNNNNNNNNN ................................. ATACGTTATATGGACGACTTCATTGTCTTAAAT 2127758 33 100.0 34 NNNNNNNNNN ................................. ATTAACGACGAAGGAGTGTTATGGCTTATTGACG 2127825 33 100.0 34 NNNNNNNNNN ................................. TTGCTCCGGTTGTCGGTATGCACAAGCCTCGCTT 2127892 33 100.0 34 NNNNNNNNNN ................................. ACTTTATCGGCAAGCATTGCCTTGCTTGCCGATA 2127959 33 100.0 37 NNNNNNNNNN ................................. AAGATATTCCTCATATTCCCGCAAGGCTTGTTTGCGG 2128029 33 100.0 33 NNNNNNNNNN ................................. CGGCTATGCAAGCGGTATCGTATCAAACCTAGG 2128095 33 100.0 35 NNNNNNNNNN ................................. GGTTCAGCGCCTACATAGTAGGCGCTGAAAGGAGT 2128163 33 100.0 34 NNNNNNNNNN ................................. CATCGATAGCTCAAGCTTATCAACGGCGCATCCT 2128230 33 100.0 35 NNNNNNNNNN ................................. CTGTAATTCTTTGGGCTTCACTTTGTACTTTTTGC 2128298 33 100.0 34 NNNNNNNNNN ................................. CTGACGAGCAAGCAGTATCAAAGCAGATCGATGC 2128365 33 100.0 34 NNNNNNNNNN ................................. TGTAATTCTTTGGGCTTCACTTTGTACCTTTTGC 2128432 33 100.0 35 NNNNNNNNNN ................................. CATAGCATGCTATACATACGTTAAGTATAGCTGAT 2128500 33 100.0 34 NNNNNNNNNN ................................. TTTTTATCAGAAACGTGGTTTAGTAGTTTCGGAC 2128567 33 100.0 34 NNNNNNNNNN ................................. TAATATATAGTATCGGTATTACATAGTTGCCGAT 2128634 33 100.0 35 NNNNNNNNNN ................................. AAGAATGGACTTTACAGGACTTGCTTTTCTACTTA 2128702 33 100.0 35 NNNNNNNNNN ................................. CTGTAATTCTTTGGGCTTCACTTTGTACTTTTTGC 2128770 33 100.0 34 NNNNNNNNNN ................................. CTGACGAGCAAGCAGTATCAAAGCAGATCGATGC 2128837 33 100.0 34 NNNNNNNNNN ................................. AACCAAGCGGCATTCCACGGGGCAGAAAGAATGT 2128904 33 100.0 34 NNNNNNNNNN ................................. TGTAATTCTTTGGGCTTCACTTTGTACCTTTTGC 2128971 33 100.0 33 NNNNNNNNNN ................................. GTAATTCTTTGGGCTTCACTTTGTACCTTTTGC 2129037 33 100.0 34 NNNNNNNNNN ................................. GGCGCCATCTGGAGTTAACCGCGTCCGTAGTGTT 2129104 33 100.0 36 NNNNNNNNNN ................................. GACAGGATAACGATTTAGCTTTTTGTAATTGCTTGA 2129173 33 100.0 35 NNNNNNNNNN ................................. CATTGGTTGCATTGCAGGATTTATACGGAGTGTAT 2129241 33 100.0 33 NNNNNNNNNN ................................. CAAGGTCCGCCGCCGTTTTTCCAATCGACGCAA 2129307 33 100.0 35 NNNNNNNNNN ................................. ACCATTCTTTGCCTTGAGCGCAGATACTTCACTAG 2129375 33 100.0 1 NNNNNNNNNN ................................. NNNNNNNNNN ========== ====== ====== ====== ========== ================================= 53 33 34 GTTTCAATCCACGCCCCCCGAGCGGGGAGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [6,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.00,-9.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1410,127] Score: 0.18/0.18 # # Final direction: R [0.55,5.55 Confidence: HIGH] >NC_015737 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2166503 28 100.0 33 CTTATCATTG ............................ CATACCGGTTTGTATGGGATCCGTGCCGCCCGG 2166564 28 100.0 33 TGCCGCCCGG ............................ CTTTGTCCTTTGCACTGATCCCGTCAGCGCTAT 2166625 28 100.0 33 TCAGCGCTAT ............................ TGATTCCGGCATCAAGGCCACCTCGTCAAAAAA 2166686 28 100.0 33 CGTCAAAAAA ............................ CACGGGACGGGCTCCCATATTGATAGTGCCAAC 2166747 28 100.0 33 TAGTGCCAAC ............................ TATAAGACGGTGATTTCACTTTAATTCTATGAA 2166808 28 100.0 33 ATTCTATGAA ............................ TCTTAAAATCCGGATCCTGCGCGTACCGGTAAG 2166869 28 100.0 33 TACCGGTAAG ............................ CGCTGGCCGAAGCGTTCATAGATAAACATGAAC 2166930 28 100.0 33 AAACATGAAC ............................ CAGGAGGCTGACCAGATTGCCGACATTCTTAGC 2166991 28 100.0 33 CATTCTTAGC ............................ TGAAAGAAACTCACCCAAAGCAGTACGATTATA 2167052 28 100.0 33 TACGATTATA ............................ CAGGAAAAACTCAACCGGCTAAAATACATATAC 2167113 28 100.0 33 ATACATATAC ............................ CGCCCGGATATCATCCGGGCAAGCTTGAAAAGT 2167174 28 100.0 33 CTTGAAAAGT ............................ CATAAAGGAGATGCTTGACGATGGCAAAGAAGG 2167235 28 100.0 GCAAAGAAGG ............................ TCAGACCCTCT ========== ====== ====== ====== ========== ============================ 13 28 33 GTAATTCCCGCGCGAGCGGGGGTGATCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-10.80,-9.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [108,89] Score: 0/0.18 # # Final direction: F [0.64,0.37 Confidence: LOW] >NC_015737 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2168760 28 100.0 33 ACGGAATAGC ............................ CGGCTACAAGTTCAACCAAAATAGCGGTTTCGG 2168821 28 100.0 33 GCGGTTTCGG ............................ GCTGAAACACTTAAATGCCCTGTTTGTGGCTCA 2168882 28 100.0 33 TTGTGGCTCA ............................ CGTGGTGTAACTTTGCCCTGATATACATTCATA 2168943 28 100.0 33 TACATTCATA ............................ CCAGTGGAACGGTCCCGCCGGGTTACAATTAAA 2169004 28 100.0 33 TACAATTAAA ............................ TGCTGGCGGTGATCCGGACACCGAGAACGGCGC 2169065 28 92.9 33 AGAACGGCGC ..........................TT TGCTGTATGCTTCACTGCCAAACCTGCCAGAGC 2169126 28 100.0 33 CTGCCAGAGC ............................ CGGTCATAGCAGTCCGGACAGATGAACGGATGC 2169187 28 100.0 33 GAACGGATGC ............................ CCGCCACGCTCCGACAGGCTCCGCGCCCATGCC 2169248 28 100.0 33 CGCCCATGCC ............................ TGTGCTGCGCCGCATGATTTCCTTTTTCGGCTT 2169309 28 100.0 33 TTTTCGGCTT ............................ TTATATCAGATACCGGTTGTCGCTACGATAGCA 2169370 28 100.0 33 TACGATAGCA ............................ CCAGTCAGAGCGGAATGCAAGCGAAATAAAAAC 2169431 28 96.4 33 AAATAAAAAC ............T............... CGGGAAAACGTTGATCGTTTCAGGCAGATCGGC 2169492 28 100.0 33 GCAGATCGGC ............................ TCAAAATAAAAAGCCCCTACGTCCTTCAGCGCA 2169553 28 96.4 33 CTTCAGCGCA ............T............... CACTTTTAACGGGTTTTGTTAAATCCAATTTCG 2169614 28 96.4 33 TCCAATTTCG ............T............... CATCGCAGTTCCTCCTAAAACGTTTCTTCGCTT 2169675 28 92.9 TTCTTCGCTT ...........AT............... GCAATATCTG ========== ====== ====== ====== ========== ============================ 16 28 33 GTAATTCCCGCGCGAGCGGGGGTGATCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-10.80,-9.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [48.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [219,113] Score: 0/0.18 # # Final direction: F [0.78,0.64 Confidence: LOW] >NC_015737 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2161501 28 100.0 33 TTTTTTTGCT ............................ TGAGCGTAAAATTGGTTAAAGAGTCGGATTTGA 2161562 28 100.0 33 TCGGATTTGA ............................ CGCCGCAAGGCTGTCAATCTGCTTCTGCATTGC 2161623 28 100.0 33 TCTGCATTGC ............................ TACTGGCGTTTAGCCATGCGGGTAACAAGGTAA 2161684 28 100.0 33 AACAAGGTAA ............................ TCCGTTCCATGCCATCCCAGCTTGCTTGTGGAC 2161745 28 100.0 33 GCTTGTGGAC ............................ TATATATACCGTCCTTAAAAATCGCGTCTGTGG 2161806 28 100.0 33 GCGTCTGTGG ............................ CAGCCTGTGCCATTCTAGCGATGCTATTCAGCC 2161867 28 100.0 33 CTATTCAGCC ............................ TAACCAACCCTTCGTCCAGACGCTCTTTAAACC 2161928 28 100.0 33 TCTTTAAACC ............................ TGGAACGTTATCCAATTGTATCGCCTCCTTTCT 2161989 28 100.0 33 CCTCCTTTCT ............................ CTCTTCCATAATTTCGAAAATATCATATGGTTC 2162050 28 100.0 33 CATATGGTTC ............................ TGAGTTACACCGGTATGACAATTCGGGAACTTG 2162111 28 100.0 33 CGGGAACTTG ............................ TTGAAAGAAAGGCAGGAGAAAAAAGATGACTGA 2162172 28 100.0 33 AGATGACTGA ............................ TCTGCATGAATCCATCGCCCACAGGCTCACCAG 2162233 28 100.0 33 GGCTCACCAG ............................ TGCGCAATCACGTTTTTGTTTTCTTCCGGCAAT 2162294 28 100.0 33 TTCCGGCAAT ............................ CGAGCGGACCGCCGAAGGGAGAGAACTTAGTGA 2162355 28 100.0 33 AACTTAGTGA ............................ TTCCACCGTCAAGCACGCTGATCTTTACACGGA 2162416 28 100.0 33 TTTACACGGA ............................ TGCGCCGCAGCAGCGTGGGACGAAAAGAACGGA 2162477 28 100.0 33 AAAGAACGGA ............................ TCCACCGCCCGCATATGCGTCGCATGGAATTTC 2162538 28 100.0 33 ATGGAATTTC ............................ TCTGATTCGCCCTTCCCCAATAAATTTATGAAG 2162599 28 100.0 33 ATTTATGAAG ............................ CGCATGGAGCCGATCGAAAAAAAGATACAAGAT 2162660 28 100.0 33 GATACAAGAT ............................ TAATTTTATACGGCCGTTCTGGCCGGGCGGAGA 2162721 28 100.0 33 CGGGCGGAGA ............................ CGGTGGTATCACGTGGTTTGCCAGCAAAAAGTT 2162782 28 100.0 33 GCAAAAAGTT ............................ CGGCGTTTTGCACAAATTTAGAGCCAGACACCT 2162843 28 100.0 33 CCAGACACCT ............................ TGCGCAGCGGCAGCCTGGGACGAAAAGAACGGA 2162904 28 100.0 33 AAAGAACGGA ............................ TATGTTTTTTTGTCATCCATTTTTCACCTCCTG 2162965 28 100.0 33 TCACCTCCTG ............................ TACTGGCGTTGAGCCATGCGGGTAACAAGGTAA 2163026 28 100.0 33 AACAAGGTAA ............................ CAGCACCATCATCATCGCGACATCATAGCCGTT 2163087 28 100.0 33 CATAGCCGTT ............................ TCAGCGCAATTTTTGCATGGCTTCCGACAACGG 2163148 28 100.0 33 CCGACAACGG ............................ TCATTTTTACACCGGAGCAGGTGTACCAGGTAA 2163209 28 100.0 33 TACCAGGTAA ............................ TATCGCATCCATGCCAGCGCTTCCGGTTCTGGC 2163270 28 100.0 33 CGGTTCTGGC ............................ CATGTGTACAGCTATGTGTTATGTACAACTGTC 2163331 28 100.0 33 TACAACTGTC ............................ CGATGTGGATGCCTTCGCGGAAGCGTATCTTGC 2163392 28 100.0 33 CGTATCTTGC ............................ TATTCTTTGCTTTTGACTTTTGACCGTCCAAAA 2163453 28 100.0 33 CCGTCCAAAA ............................ CGGCGAACGGCTAAACAGCATCGCTAGAATGGC 2163514 28 100.0 33 CTAGAATGGC ............................ TCAAGTAATCAACGTGATTCTTTCCGTCAATTA 2163575 28 100.0 33 CCGTCAATTA ............................ TCAGGTAATCCACGTGATTCTTTCCATCAATGA 2163636 28 100.0 33 CCATCAATGA ............................ TGCGCCGCAGCAGCGTGGGACGAAAAGAACGGA 2163697 28 100.0 33 AAAGAACGGA ............................ TGCGCCGCAGCAGCGTGGGACGAAAAGAACGGA 2163758 28 100.0 33 AAAGAACGGA ............................ TGACAGCGACAAGGAAGACCTGAAGCGCGCGAA 2163819 28 100.0 33 AGCGCGCGAA ............................ CATGGGATTGGCCATGGAAGGCGGCAGATCAGG 2163880 28 100.0 33 GCAGATCAGG ............................ CGGCGGACGAGGATTGCACGGTGATTGCTTAAT 2163941 28 100.0 33 ATTGCTTAAT ............................ CCAGCCATACACAGCGGCAATTTTTCCCGGCAA 2164002 28 100.0 33 TTCCCGGCAA ............................ CAACAATCTGTGTGTAAGGACTAATCAACTCAA 2164063 28 100.0 33 ATCAACTCAA ............................ CACGGTTGACGTTCTGGCCAGAAGATCAATGTT 2164124 28 100.0 33 GATCAATGTT ............................ CAACGGAAGTTGGACAGGATAAATGCATGTGGG 2164185 28 100.0 33 TGCATGTGGG ............................ CGAGCGATCCGCCGAAGGAAGGGGACTCAGCGA 2164246 28 100.0 33 GACTCAGCGA ............................ TGCTCGGAAGGTCATATCCTCTGCTTTGACGAG 2164307 28 100.0 33 CTTTGACGAG ............................ CAGGCGAACACCGGGAAAGGGCTGCAGTGGTTG 2164368 28 100.0 33 GCAGTGGTTG ............................ TCACGGCATTTTTTAAAGCCCGTGAAAGCACCA 2164429 28 100.0 33 GAAAGCACCA ............................ CGCCGCGCCGCCGCAATTCTCTGCGCACGGAAG 2164490 28 100.0 33 CGCACGGAAG ............................ TGCTGAGAAAGGCAAACAAAAAAATGTCGTTGG 2164551 28 100.0 33 ATGTCGTTGG ............................ CCCTCGCAAGCAGGCCCCACGCAAGTCGGCTCC 2164612 28 100.0 33 AGTCGGCTCC ............................ TACGGCGATCCTGACGGCCTGGGCGATCTGCAG 2164673 28 100.0 33 CGATCTGCAG ............................ TCCGACAAGAGGCCGGCCATCAGCAACCATGTA 2164734 28 100.0 33 CAACCATGTA ............................ TGGATTGACTACGCAAAGCCCTGCGATAATGGG 2164795 28 100.0 33 CGATAATGGG ............................ TACCATTAGTCAAGATTCCGAACTTTGCTTTTG 2164856 28 100.0 33 TTTGCTTTTG ............................ TAATTGCACTATCTTTGATATTTTGTAAATTCA 2164917 28 100.0 33 TGTAAATTCA ............................ CTTTGTCCCCTGTGCCTTTGGCGCATAATTCCC 2164978 28 100.0 33 CATAATTCCC ............................ TGCCATATTATGATCTGATTCTTTGATCCCAAA 2165039 28 100.0 33 TGATCCCAAA ............................ TCACCCCGGATGTAAAGCACGTCACTTTTTATG 2165100 28 100.0 ACTTTTTATG ............................ TCACATCACAG ========== ====== ====== ====== ========== ============================ 60 28 33 GTAATTCCCGCGCGAGCGGGGGTGATCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-10.80,-9.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [78,78] Score: 0/0.18 # # Final direction: NA [0.37,0.37 Confidence: NA] >NC_015761 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2791744 29 100.0 32 NNNNNNNNNN A.TAAA.G..................... GCTGGTATTGGTACTATGGTGGGAGGTCATTG 2791805 29 100.0 32 NNNNNNNNNN ............................. TCTGATAATTCAGGGAAATTCGTCATTCTGAC 2791866 29 100.0 32 NNNNNNNNNN ............T................ CTACCCTAAATCTTTGCCAATCTCTCCATACG 2791927 29 100.0 32 NNNNNNNNNN ............................. TGATATCCATTGACACCCCTCCGTATTGAATT 2791988 29 100.0 32 NNNNNNNNNN ............................. TGGATAATCGTCCAGGCCTCAGACGGGTAGTG 2792049 29 100.0 32 NNNNNNNNNN ............................. GGCGCGAATTGATTTAAACGGCAACTGGATTC 2792110 29 100.0 32 NNNNNNNNNN ............................. TTGGCTGGAATGGGGGCCGATGGCAACCTGTA 2792171 29 100.0 32 NNNNNNNNNN ................C............ CTAGAATGCACCCCGTATTTTACACAGCGTAA 2792232 29 100.0 32 NNNNNNNNNN ............................. AACCCCTTGTGTCGGCAAAACCCGGTTATGTC 2792293 29 100.0 32 NNNNNNNNNN ............................. TCCTTGCTACCAACAATTGTAGCTGCAACTCC 2792354 29 100.0 32 NNNNNNNNNN ............................. CGTATTACCGTGAATCGCTATTTTGTTTGCCG 2792415 29 100.0 32 NNNNNNNNNN ............................. GTTCATTTGCGCCATCCCACCATTGAGAAACG 2792476 29 100.0 32 NNNNNNNNNN ............................. ATTAATTCCGTTAGTATATCGCTGAATATATC 2792537 29 100.0 32 NNNNNNNNNN ............................. TTAACAAGTTGTTAGCGTAAGATGACTATATG 2792598 29 100.0 32 NNNNNNNNNN ............................. TCTATGCCAGCTAATGACGGAAACAGGAATTA 2792659 29 100.0 32 NNNNNNNNNN ............................. TAATTTCTCCCGCACTTAATAAATCTATTATT 2792720 29 100.0 32 NNNNNNNNNN ............................. TTTTTGATTTTTATAACGTTGGAGTCGCCCAA 2792781 29 100.0 32 NNNNNNNNNN ............................. CTAAAACTGTGGGTCTAGCACCTCCATCCCCC 2792842 29 100.0 32 NNNNNNNNNN ............................. TGTACCACATTTGCCCGGTGTAACGTATACCC 2792903 29 100.0 32 NNNNNNNNNN G............................ CCGTGTTCCTGGCTCGCGGTGGTCTGATGTCT 2792964 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 21 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [143,98] Score: 0/0.18 # # Final direction: R [0,1.92 Confidence: HIGH] >NC_015761 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2808974 29 96.6 32 GGTTATGGAA ..A.......................... GAGGGCACCCAACCGCAGTATTTTTCATCTGC 2809035 29 100.0 32 TTTCATCTGC ............................. GTCAGAGCCGTTACCAAAGGATGATCCGGAAG 2809096 29 100.0 32 GATCCGGAAG ............................. CCAGCAGGAAACAGCGGATGCGTAACTGTTTC 2809157 29 100.0 32 TAACTGTTTC ............................. TGATCGATGACTTGCGAAAATTTGGCGTACAT 2809218 29 100.0 32 TGGCGTACAT ............................. AAAAGGCGTTCCTGACATTTCATGTGATATTC 2809279 29 100.0 32 TGTGATATTC ............................. TTTATAGCGTAGCCCTGATAAAACAAAAAAAA 2809340 29 100.0 32 ACAAAAAAAA ............................. CCGAAGCAACAAATGCAACGTTTAATTATTGG 2809401 29 100.0 32 TAATTATTGG ............................. AATCAAGTTTTACACGCTGGCCGAGGGCGAAC 2809462 29 100.0 32 GAGGGCGAAC ............................. AACTACGTAAATTGGCGTGCTGCGCGTGGGTA 2809523 29 100.0 32 CGCGTGGGTA ............................. GCGGCAACCATGATATTTATAATGAACTCGCT 2809584 29 100.0 32 TGAACTCGCT ............................. AAAAGTTATCGTATGCGCCGAATTTTATGACT 2809645 29 100.0 32 TTTTATGACT ............................. TACAAATAGAAGATTAGGATTTTCAGGAATAA 2809706 29 100.0 32 TCAGGAATAA ............................. ACCAGCCCAGAAATCAGCACGTCCTGAATTGT 2809767 29 100.0 32 CCTGAATTGT ............................. TTAATTAAAGTCTCTTCATTATACTGATTAGA 2809828 29 100.0 32 ACTGATTAGA ............................. GGATCAACCTGACGCAACGCACGGTTAATGGC 2809889 29 100.0 32 GGTTAATGGC ............................. GCTGTTTTAGCATTTTATTAGCGGTATCCGCC 2809950 29 100.0 32 GGTATCCGCC ............................. ATTTTCAGTACCTCCAGATGGGTCGGTTGCCG 2810011 29 100.0 TCGGTTGCCG ............................. ACTAAATATA ========== ====== ====== ====== ========== ============================= 18 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [93,292] Score: 0.18/0.18 # # Final direction: R [0,1.83 Confidence: HIGH] >NC_015738 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 2086071 32 100.0 34 GCAGCGATAA ................................ TGCGGCCATTACTTGTCCTCCTTTCTTGGTTGGC 2086137 32 96.9 34 CTTGGTTGGC ......G......................... GATCCCAAGCGGCTTTGTCCTCGGCGCGATCGAC 2086203 32 100.0 35 CGCGATCGAC ................................ CAATCTAGCCCATCCACAACAGCCATTGCGTCGGT 2086270 32 100.0 33 TTGCGTCGGT ................................ AACGATGTGCCGACCGAGCTTTTGCCGCTCGTT 2086335 32 96.9 35 GCCGCTCGTT ..................A............. ACACCACCGACCTGACGGCGGCGTGCCTGCTCATG 2086402 32 100.0 35 CCTGCTCATG ................................ CTAACGATTCCGCTTATCGCGCTTCGTAAAGTACC 2086469 32 100.0 34 GTAAAGTACC ................................ AGCGGATGGCGCGCAGAACATCCGAGCCGGTCGT 2086535 32 100.0 34 AGCCGGTCGT ................................ GGCGCTTGAGAATGTTTTCGAGCCGGACGTGCTT 2086601 32 100.0 36 GGACGTGCTT ................................ CGACTGGGCAAAACGGCCGAGCGCCGTGCCTTTGCT 2086669 32 100.0 34 TGCCTTTGCT ................................ ACATCAAAAACGATAACGGGACACCCAAGCCCAT 2086735 32 96.9 35 CCAAGCCCAT ....T........................... GAGATCGGCCGCGAGAACGCCGCCAAACAGCGCAA 2086802 32 100.0 35 AACAGCGCAA ................................ CGCGGGATACCCGTTAGGTAATCCTCGTTGTCGTC 2086869 32 100.0 34 CGTTGTCGTC ................................ AATGATCCATTTCGTAAGGCCGGGAGAGTATGTG 2086935 32 100.0 34 AGAGTATGTG ................................ CGCGCAAGAAGCGTGGGATTCTGTATCCCCGGTC 2087001 32 96.9 36 ATCCCCGGTC ............................T... CACGGTGGACGTCGGCACCGTCGACGATCCCTCGGC 2087069 32 96.9 34 ATCCCTCGGC .............T.................. TGGCTAACAAGGCTGGCGTTTCTGCGGACGAGAT 2087135 32 100.0 34 CGGACGAGAT ................................ TGTGCGTTTCGTCGTCCTGGTTCACGTCGGGGGA 2087201 32 96.9 CGTCGGGGGA ............................T... GAACCACCTA ========== ====== ====== ====== ========== ================================ 18 32 34 GTTTCAACCCGCGCGTCCGCGAGGGACGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-9.90,-9.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [36.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [36,35] Score: 0/0.18 # # Final direction: F [1.15,0.27 Confidence: MEDIUM] >NC_015738 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2677116 36 100.0 30 ATAGTAGGTT .................................... TAGGCGGTGACCGGTGATGCGCCTGGAAGA 2677182 36 100.0 30 GCCTGGAAGA .................................... GGTGATCGAAATCTGAACCATACAGAGCAT 2677248 36 100.0 29 TACAGAGCAT .................................... CTCTTGTCTGTTATGCCGCCGCCGGCGTG 2677313 36 100.0 30 CGCCGGCGTG .................................... AGCTTCTTTAATACCCAATCTTTCGCCTCT 2677379 36 100.0 30 TTTCGCCTCT .................................... TCACCGTACGGCGGCTGAACACCTGTCAAA 2677445 36 100.0 30 ACCTGTCAAA .................................... CGAACCCCGCGCCGTCCGCCAAGATGTAGC 2677511 36 100.0 29 AAGATGTAGC .................................... CGGGCGATCGGGGACGTGGCCCTCTCGAT 2677576 36 97.2 30 CCCTCTCGAT .....T.............................. GTATTGATGGCCCTGTCCAAAAACTCGTCC 2677642 36 100.0 30 AAACTCGTCC .................................... CACTCCGTCAGATCAAGCGGCTTGCCCTCA 2677708 36 100.0 30 CTTGCCCTCA .................................... CAGGCTGTTCTCGCTCAGGCTGACGCGGCT 2677774 36 100.0 30 TGACGCGGCT .................................... ATCTTGCTCCAAAGGTACGTCAACCTAGTG 2677840 36 100.0 30 CAACCTAGTG .................................... CCATCATCGCATATCAAGAACTAAAGGACG 2677906 36 100.0 CTAAAGGACG .................................... AGAGCAAACA ========== ====== ====== ====== ========== ==================================== 13 36 29 GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [31,141] Score: 0.18/0.18 # # Final direction: F [0.68,0.55 Confidence: LOW] >NC_015738 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2679629 36 100.0 30 NNNNNNNNNN .................................... TGTCAGCACGTCCTACAAGGACTGGGAAGG 2679695 36 100.0 30 NNNNNNNNNN .................................... CAGGCTGTTCTCGCTCAGGCTGACGCGGCT 2679761 36 100.0 30 NNNNNNNNNN .................................... TTCGAAGCGAGCATGGCTCACTTATGTTCA 2679827 36 100.0 30 NNNNNNNNNN .................................... AGTTGCAAGCATGGTATGTGATCTTCCTTA 2679893 36 100.0 30 NNNNNNNNNN .................................... ACCTGCTTGGGGGTAAGGTGCGGCTGCTCT 2679959 36 100.0 30 NNNNNNNNNN .................................... GGTAGTTTCTCGAGGCGGCATGCCTGGGAA 2680025 36 100.0 29 NNNNNNNNNN .................................... CGTGGATTGATACGTGCCATCATGCACTC 2680090 36 100.0 30 NNNNNNNNNN ..........................A......... CGACCCTCGGCGGTCTTGGCCGATTCCTCG 2680156 36 100.0 30 NNNNNNNNNN .................................... ACGATATCGGCATCACGGAGCGCAACGGCA 2680222 36 100.0 30 NNNNNNNNNN .................................... TCTGCTGCCGTCTTCCGGGCTATTCGATTA 2680288 36 100.0 30 NNNNNNNNNN .................................... TCTCCAACGCCTGATGCAAACTTCGATCCG 2680354 36 100.0 30 NNNNNNNNNN .................................... TGAGAGGATCTGCTGCGGAACGACATTCAT 2680420 36 100.0 29 NNNNNNNNNN .................................... AGGAGTAGATTCATGAACTATAAAGAGTT 2680485 36 100.0 30 NNNNNNNNNN .................................... GAAACCACCGCTTTTTGGTGCTTTTCGCTA 2680551 36 100.0 30 NNNNNNNNNN .................................... GCAACACTGCGGTGCGATTTGACTTGGCCG 2680617 36 100.0 29 NNNNNNNNNN .................................... CTGCCGGTGCTTTTATCACGTCATATGCA 2680682 36 100.0 30 NNNNNNNNNN .................................... GAGCTCGACGGTGCTGGCGTGTTCATCGGA 2680748 36 100.0 29 NNNNNNNNNN .................................... CACGCGCGGTAGATGAGCTAGTGGTAGTT 2680813 36 100.0 29 NNNNNNNNNN .................................... CTGACTTGTTCGTTGGATACGCCGAACAA 2680878 36 100.0 30 NNNNNNNNNN .................................... CCACACTATCACGACTAGAAAGTTCGCGAA 2680944 36 100.0 29 NNNNNNNNNN .................................... TAAAGATAATCCGTTTATTGCTGTAGTGA 2681009 36 100.0 29 NNNNNNNNNN .................................... CGGTATCGCATACTCTGGGCGCTTCCTCA 2681074 36 100.0 30 NNNNNNNNNN .................................... GCTGACTGAATTTGTTCGATCAATTGCACG 2681140 36 100.0 29 NNNNNNNNNN .................................... TCCGGTTCGTACACCAAGAATATTGTCAG 2681205 36 100.0 30 NNNNNNNNNN .................................... GATAACTGCTTTTTACATAGACCAAGACCA 2681271 36 100.0 30 NNNNNNNNNN .................................... TCAATGAGCGCGCGGGCTGCTACGACGTTG 2681337 36 100.0 30 NNNNNNNNNN .................................... GGCTCGTCATCGCTCCACCACCTTCGCCCG 2681403 36 100.0 30 NNNNNNNNNN .................................... CGGGGCTCGGCGACACCGTTCGTGGTGTGT 2681469 36 100.0 30 NNNNNNNNNN .................................... AGCTTGTCAGCCCACGCATTCATCGACTCT 2681535 36 100.0 30 NNNNNNNNNN .................................... GATCCAACGCCCCGGAGTAGACGCGCGTGC 2681601 36 100.0 29 NNNNNNNNNN .................................... TTGTCAGTCAACAATACAAGCACGTAGAG 2681666 36 100.0 30 NNNNNNNNNN .................................... CATGGCGTACTTGCAAGGCATGCAATGGCG 2681732 36 100.0 30 NNNNNNNNNN .................................... TGCGTCTAGTATTCCTATCACAGTTACACT 2681798 36 100.0 30 NNNNNNNNNN .................................... CGTTGATTACAGATGCGGTGCGCTGCATCA 2681864 36 100.0 30 NNNNNNNNNN .................................... CGCCGAGTGCTACGGCAAGTTTAAAGCGCT 2681930 36 100.0 29 NNNNNNNNNN .................................... CTTCGCAGGCTTTTATGGCACTCTTTCCG 2681995 36 100.0 29 NNNNNNNNNN .................................... TCGGCGTAACCGATAAGTACGTTTTACTT 2682060 36 100.0 30 NNNNNNNNNN .................................... CTGGCTCATTCGGGTTGCAACGAATGTCTG 2682126 36 100.0 30 NNNNNNNNNN .................................... CGGGCGAGGAGATCAAGAAGACCGTCAAGA 2682192 36 100.0 30 NNNNNNNNNN .................................... TAAAGTCCGCCCTGCCACGTCGTGAACGAC 2682258 36 100.0 29 NNNNNNNNNN .................................... TCGTCCATGTACACGTCCGCATACACCTT 2682323 36 100.0 30 NNNNNNNNNN .................................... CCGGCACCACGACTGACCTTCCGGTCACCA 2682389 36 100.0 30 NNNNNNNNNN .................................... ACTTTTCATGCACATCGAGCAGAATCGAAA 2682455 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 44 36 29 GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [252,56] Score: 0.18/0.18 # # Final direction: R [0.18,1.05 Confidence: HIGH] >NC_015757 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2370254 30 100.0 34 NNNNNNNNNN .GA.T..GC.GGA...C.C........... GTCCCTGTCGTCATATTAGCCTGGCCGCCACTCT 2370318 30 100.0 34 NNNNNNNNNN .............................. CAGCCACATGATACGATGAAGGCGCACCAAAAAA 2370382 30 100.0 35 NNNNNNNNNN .............................. CCGGCAGGCGTTCTTTTTCCCGCTTGGTTAGGCGG 2370447 30 100.0 35 NNNNNNNNNN .............................. CGCCTGTTGGACACATACCTGCGTGAACGGAGAGA 2370512 30 100.0 38 NNNNNNNNNN .............................. CGGCGAAGGCCATGAGCCAGATCTACCATGATTCGGCG 2370580 30 100.0 34 NNNNNNNNNN .............................. CCAGAAAACCCGAAAAAAGAAATGTTGACATCCG 2370644 30 100.0 37 NNNNNNNNNN .............................. GTAATCATACGGCCTCACCGGCATCGCCACGTAGGAG 2370711 30 100.0 36 NNNNNNNNNN .............................. TCGGCACAGAAGCCACGTTAAATGGAGCCCTAACAG 2370777 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 9 30 35 GTTTCAATTCCTCATAGGTAGGCTATAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [45.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [300,619] Score: 0.18/0.18 # # Final direction: R [0,5.73 Confidence: HIGH] >NC_015847 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1030344 37 100.0 35 CACATTATCT ..................................... TTACCTCTATCATATACATATTTATCTTATAGATT 1030416 37 100.0 35 CTTATAGATT ..................................... ATTTTTCGGGTTATCCCATCTGCAAGAATTATATT 1030488 37 100.0 38 GAATTATATT ..................................... CAGTATTAGATATAACTGATCCTGAATGCTACCAAGTT 1030563 37 100.0 35 CTACCAAGTT ..................................... ACGCTTTTCTTACCATCTCAGTTCTGTCGTAAGTT 1030635 37 100.0 37 GTCGTAAGTT ..................................... AAAAAAAATAATTAAATTTCCCATCCAAAGTCATCAG 1030709 37 100.0 36 AAGTCATCAG ..................................... TTAATGGTGGCGTATTTTTCAATATTTCCCGAAGAG 1030782 37 100.0 37 TCCCGAAGAG ..................................... AAAAAAAATAATTAAATTTCCCATCCAAAGTCATCAG 1030856 37 100.0 36 AAGTCATCAG ..................................... TTAATGGTGGCGTATTTTTCAATATTTCCCGAAGAG 1030929 37 100.0 36 TCCCGAAGAG ..................................... AAATGTTTTTGCCGGCAATTCGTAAAAGACAGCAGG 1031002 37 100.0 36 AGACAGCAGG ..................................... ATTTTTTTAAATTCATTTACGAGGATATCTATCCTT 1031075 37 100.0 37 ATCTATCCTT ..................................... GTTCCGACTGGGACTCTCATTTTTCCGAGTGTGTTAA 1031149 37 100.0 37 AGTGTGTTAA ..................................... AAAATAACTCTTTAATGTCTTCTTTTTTGTATTTATT 1031223 37 100.0 34 TGTATTTATT ..................................... CCAATGTCTGTTGGTAGTGAAAATATTTTACCAA 1031294 37 100.0 35 ATTTTACCAA ..................................... ATGGATCAATGGAACAAATGAGGTGACCAACTTGT 1031366 37 100.0 35 ACCAACTTGT ..................................... TAGATGGATTAACTGCGTATAATTTAGATTATAAT 1031438 37 100.0 35 AGATTATAAT ..................................... ACCGTTTCACAAAGTTTAAAACTGCAGTCTTCACT 1031510 37 100.0 36 AGTCTTCACT ..................................... GTTCTTTTCCAAGCGTTATAATAAACTCATTACCTC 1031583 37 100.0 36 TCATTACCTC ..................................... TGCCATCATTCCAAGGTCTTCAAAAGAAATTTCAAA 1031656 37 100.0 36 AAATTTCAAA ..................................... CTGTCGTTTCAGTCCAATAAGGCGTTAGGTTTGAAA 1031729 37 100.0 36 AGGTTTGAAA ..................................... ATGTCATACAATTATAGTCATCCGGCACTGACTCAA 1031802 37 100.0 34 ACTGACTCAA ..................................... ACTGTTTTTCCTTTTGACTCCATAACAAAAACCG 1031873 37 100.0 37 ACAAAAACCG ..................................... CCTACAATGAAAAGAGAATGACTACCGAATGCGTGTT 1031947 37 100.0 39 AATGCGTGTT ..................................... CTACACGCTTAGAATCTTCTTACTTGCAAGTACCATGGA 1032023 37 100.0 34 GTACCATGGA ..................................... TTGCAATTGCGTTAGATTTGTTCACTCGAATATC 1032094 37 100.0 34 CTCGAATATC ..................................... TAACCCCTGTCGATTTTGAAATAATTTTTGAAGT 1032165 37 100.0 41 TTTTTGAAGT ..................................... TCGATGAAGCGGCATTCGTTGATGATTATGCAATAAGAGAT 1032243 37 100.0 35 AATAAGAGAT ..................................... TATACTCGTAAAAGAAATATGAATATAGAAACAGA 1032315 37 100.0 36 TAGAAACAGA ..................................... CACGAAGGGGTAGAAGAATGGAGTTAGCAATATATT 1032388 37 100.0 36 GCAATATATT ..................................... TTCTCTTTGTCAAAATCAATGATAATCCCCCTTACT 1032461 37 100.0 36 CCCCCTTACT ..................................... TAAAAAGAAACCATGTCTTCTTCAGGTACCCTGCCT 1032534 37 100.0 35 TACCCTGCCT ..................................... CTAAAATTAATTTCCGCATTTTTATGATATTCGTT 1032606 37 100.0 37 GATATTCGTT ..................................... TCGGTTTTTGTTACGTTCACTTCTGTGTTTACGTATT 1032680 37 100.0 35 TTTACGTATT ..................................... CATGAAGTTTCAAGACGCAACACTGGTAGAGTTAG 1032752 37 100.0 36 GTAGAGTTAG ..................................... AATCGTATTCTCCTCCTAATAATTGCAGTGTATCCC 1032825 37 100.0 36 AGTGTATCCC ..................................... CACATTTTGATGGTGACTGATCCAGGAATGGGTAAA 1032898 37 100.0 36 AATGGGTAAA ..................................... AGCTTCTTTCGTAATCCATATACTCATTCTTAGGGG 1032971 37 100.0 38 TTCTTAGGGG ..................................... TTAAATTACGGCTTAGATTATGAAGATAACGCGCTATT 1033046 37 100.0 35 ACGCGCTATT ..................................... TAAAGACGGAAAAATAATAAAAATATACTGGAGAG 1033118 37 100.0 37 TACTGGAGAG ..................................... TCCCACCACAAACCAACACGCTCGGCCGTTCCGTCGT 1033192 37 100.0 35 GTTCCGTCGT ..................................... TAAAGACGGAAAAATAATAAAAATATACTGGAGAG 1033264 37 100.0 36 TACTGGAGAG ..................................... AGGATATCGGGCCAATCTGAGCCGTTAACTAACGTA 1033337 37 100.0 35 AACTAACGTA ..................................... TATACATGGCAACTGCAAAAGAAGCGGACGATATT 1033409 37 100.0 36 GGACGATATT ..................................... CAATTACATTGAATGGATGTGTATCGGATTTGGAAT 1033482 37 100.0 35 GATTTGGAAT ..................................... GCATTTCAAAAAACTTATTATAAACTTCCCTAAGA 1033554 37 100.0 37 TTCCCTAAGA ..................................... GTATAAAGATACCTTGAGCAGTTTCAGGCCTCATAAA 1033628 37 100.0 36 GCCTCATAAA ..................................... TTGGATAGCAAGTGTATGATGTATTTTGCATATAGT 1033701 37 100.0 36 TGCATATAGT ..................................... AGTCTTCGATTTCTTCATATTGCTCTTGATTTTCTG 1033774 37 100.0 38 TGATTTTCTG ..................................... CCGTTACCGAATGCGAAAATGTCGGCAGGGGCTCCATT 1033849 37 100.0 36 GGGCTCCATT ..................................... GTTATTTAGATAACCCTTGTGAAAATCCGTACAATG 1033922 37 100.0 35 CCGTACAATG ..................................... TACTGTCGATAGCCTATTTAGAAAACGGAATAGTA 1033994 37 100.0 34 CGGAATAGTA ..................................... ACAGACTTATTTGCAAAAGGAAAATCATTCAAAA 1034065 37 100.0 34 TCATTCAAAA ..................................... TTGTGCTGATGAAATGTTCGCAGCTGTTGAGGTT 1034136 37 100.0 35 TGTTGAGGTT ..................................... CAAGAATCGATATGACATCATCATACGTTCCAGAA 1034208 37 100.0 35 CGTTCCAGAA ..................................... GCACACTTCAAGACCGAAAAAAAGACAGTTAGGCA 1034280 37 100.0 41 CAGTTAGGCA ..................................... TTAGCCCGCCCCGTTTCCCCTAATTTCACGGTAGCCTGATT 1034358 37 100.0 TAGCCTGATT ..................................... CGAAGCAAGA ========== ====== ====== ====== ========== ===================================== 56 37 35 CTAAAAGAATAACTTGCAAAATAACAAGCATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.97%AT] # Reference repeat match suggestion: F [matched CTAAAAGAATAACTTGCAAAATAACAAGCATTGAAAC with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-2.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [355,271] Score: 0/0.18 # # Final direction: F [5,0.37 Confidence: HIGH] >NC_015758 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3095752 36 100.0 38 NNNNNNNNNN .................................... TCGGGCACGGCCGAAACACCGCGCGAAGGGCGGTTCAA 3095826 36 100.0 40 NNNNNNNNNN .................TC................. TGGGAGGATGTCACTCGGACATAGCTGTCATCGGCGGTGT 3095902 36 100.0 40 NNNNNNNNNN ................................G... ATGGAGCAGTAGCGTGGCTGTGGTGTGGCGGGCGATATGC 3095978 36 100.0 37 NNNNNNNNNN .................................... TGCTGCACCTCCCGCACCCGGTGCGATTCTGCGTCCA 3096051 36 100.0 36 NNNNNNNNNN .................................... CCCGATAGTCGCGCTCGTCCATGTCCCACCATGAGG 3096123 36 100.0 35 NNNNNNNNNN .................................... TACCTGATAGAAGCCGGAAAGCTCCGTGCCGTCAG 3096194 36 100.0 38 NNNNNNNNNN .................................... AGGGCACTGGACCTGTATGAGGCACAGATGGCGTACTA 3096268 36 100.0 36 NNNNNNNNNN .................................... GGCTTGTCATCGACTTCGGTGCCTGCGTCGGATGGT 3096340 36 100.0 36 NNNNNNNNNN .................................... AATCGGCCCGCCAGGCGCGCCGTGACGCAATTACCA 3096412 36 100.0 38 NNNNNNNNNN .................................... TCGCGGAAGTCCGCCGTGTCGGCGACGAGTGGATGCAA 3096486 36 100.0 41 NNNNNNNNNN .................................... CTGGCGTATCCGTGGCTCTGTATGCCGCTGCTCGTCGTCGG 3096563 36 100.0 35 NNNNNNNNNN .................................... ACTTGCGCGCACAACGCATCCGCCATCCACGGGGC 3096634 36 100.0 37 NNNNNNNNNN .................................... CTGAAAGGGGGACTGTGGACGAGTTCGCGCTCAAAAT 3096707 36 100.0 38 NNNNNNNNNN .................................... GCGTGAATAAGATTGTCAGGCTGGTGCTGCGTTTCCGT 3096781 36 100.0 38 NNNNNNNNNN .................................... ACTCTCAACCGCGCCACGCTCAAAAAAAGTGTTATTGA 3096855 36 100.0 36 NNNNNNNNNN .................................... CCGCTGGGGGCAGGCCCAGGTGGGACGGTTCCTCGC 3096927 36 100.0 43 NNNNNNNNNN .................................... TTCGGGAGCATGCCGCAGCTGCGGATGTGGTGCTGGATTTCGA 3097006 36 100.0 41 NNNNNNNNNN .................................... ACGTTGGAAGCGTTTCGAGCGTACGGACTTTCCGGATGCAG 3097083 36 100.0 38 NNNNNNNNNN .................................... TTGACTCAGACCCCAGCGCCAACTTGCCCACCATCCGC 3097157 36 100.0 38 NNNNNNNNNN .................................... AGGCGCTTCGACGGTGTGGGCGAGGTGACTTCGCAAAG 3097231 36 100.0 37 NNNNNNNNNN .................................... TGCGTCAAGTGCGGCACCGCCGTCATGTCGGTGTCGA 3097304 36 100.0 38 NNNNNNNNNN .................................... TTGAACACGCCGATACCTATTTGGTCGGGAGTGATAAA 3097378 36 100.0 35 NNNNNNNNNN .................................... TGACAGGGTGCGGTGGTCGCTGATCGGCTCCCCGA 3097449 36 100.0 37 NNNNNNNNNN .................................... CGGACTTGATCGACGCGAACCTGTCTGACGCGAACCT 3097522 36 100.0 37 NNNNNNNNNN .................................... GGCTGGAAAAGGGCGCGGGGCAACCGCATCGTCAAGA 3097595 36 100.0 36 NNNNNNNNNN .................................... GCGTTGTGGTCGTGTCGTGGAGCCTGTATTTCGCTG 3097667 36 100.0 36 NNNNNNNNNN .................................... CATTAGTTGGTGTTGTGATCGCTAAACGCCGGGGCA 3097739 36 100.0 38 NNNNNNNNNN .................................... CTATCCGCGGGAAGAGATCACGAATCCGGCGTCGAAGG 3097813 36 100.0 38 NNNNNNNNNN .................................... ATGCTGAGCTGAGGCGCCGGATGATGGTGGTGCTGAAG 3097887 36 100.0 35 NNNNNNNNNN .................................... TGACAGGGTGCGGTGGTCGCTGATCGGCTCCCCGA 3097958 36 100.0 1 NNNNNNNNNN .....................GAACC.C.CCGGTGA NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 31 36 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [3-13] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [38.3-38.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [150,28] Score: 0.18/0.18 # # Final direction: R [0.59,0.74 Confidence: LOW] >NC_015757 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2380163 30 96.7 34 ACGGTCTATG -............................. AGATATTGTCATCGGGTATCCTCCTATCAGGTGG 2380227 30 100.0 36 TATCAGGTGG .............................. TGGGCATTCGTCGAATTACGATTCGCTAGCGTTACG 2380293 30 100.0 34 TAGCGTTACG .............................. CGCAACCGCCTGTTGGCGCTCTAATCCGCTACGG 2380357 30 100.0 35 TCCGCTACGG .............................. ACGATACGGTCGTGGTCAGTGAGGTTGTGTTCGGG 2380422 30 100.0 36 TGTGTTCGGG .............................. GCATTCTTCCATGGCCCGGACAATCACGTCCATCGT 2380488 30 100.0 35 CGTCCATCGT .............................. TCGTCGGCGGCATGGGGGATCATCCACGTATACAG 2380553 30 100.0 36 ACGTATACAG .............................. CTTGGCGATGCAGGATGACGGATGGATTCTCCGGAG 2380619 30 100.0 TTCTCCGGAG .............................. CCATTTTGCGC ========== ====== ====== ====== ========== ============================== 8 30 35 ATTTCAATTCCTCATAGGTAGGCTATAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [56.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [209,420] Score: 0.18/0.18 # # Final direction: R [0,5.73 Confidence: HIGH] >NC_015758 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3099392 36 100.0 39 GTGAGGTTGG .................................... ACGGACGAGCTGGACCGCATCAGCGATGCTGAGCTGAGG 3099467 36 100.0 37 TGAGCTGAGG .................................... TTGTCTCAATCGTGCCGTCTGCGGTGACACGCTCCAA 3099540 36 100.0 40 CACGCTCCAA .................................... TCGACGATTGGGACATCGACATCGACGCGATCGTCGACGA 3099616 36 97.2 41 TCGTCGACGA ..........T......................... GTGATCTTCTCTCCTGGCGAGGTCAAGGAAATCGATGTGGA 3099693 36 100.0 36 TCGATGTGGA .................................... CACCAGGATCAGCGCCAAGCCAGTTAGCGCAATCCA 3099765 36 100.0 36 GCGCAATCCA .................................... CTCCCGGACCATCTGCAGCTCGCCCGGGTCCATGCG 3099837 36 100.0 37 GGTCCATGCG .................................... CGGAGTCATCCGCGCGGGCCGGCGCGATTGTTGCCGG 3099910 36 100.0 36 TTGTTGCCGG .................................... TGGCGATTTACGACGCTGACGGGAACTCGTGCGAAT 3099982 36 88.9 29 TCGTGCGAAT ................................---- TCCGCGAAATTCACTGCGCGTTATTCAAG 3100047 36 100.0 41 GTTATTCAAG .................................... CCGAGCCGACCATCCGCATCACACCGAAAGGGTTGGCGCAA 3100124 36 100.0 36 GTTGGCGCAA .................................... ACGTGGGGAGAGGGAATGGCAATGATGGTCGACGAA 3100196 36 100.0 40 GGTCGACGAA .................................... CTCGGACAGCATCTCCCCGGGCGGGCAGCAGATATCCCAT 3100272 36 100.0 41 GATATCCCAT .................................... CGACCCGTGGCCGCCAGGTTGCCGCCGCCGTTGCTCACCTG 3100349 36 100.0 37 TGCTCACCTG .................................... CCGGAAGTCAACTAGAGCGGGTGTCGAACGCTGCCCG 3100422 36 100.0 37 ACGCTGCCCG .................................... AGGCTGAAATTGAAGCCGGAAATGACGACGCATTGGT 3100495 36 100.0 35 ACGCATTGGT .................................... CTAAGCCCGCTAATCCCGCACAAGTGGTCAGAAAA 3100566 36 100.0 39 GGTCAGAAAA .................................... CTGATGATTGGTCGGCGTATGACGTGCTACTGAGGTGTT 3100641 36 100.0 38 CTGAGGTGTT .................................... ACCCCTGAGCCACGGCATGTGCACGGCTCCGTGTTCAA 3100715 36 100.0 37 CCGTGTTCAA .................................... GAGGAGGACGCTGACTGATGGCACGACGCGTGGTGTA 3100788 36 100.0 39 GCGTGGTGTA .................................... TCGGCGTGTCCTCTCGCAGCGTCGCCGTCCCCGATATGG 3100863 36 100.0 39 CCCGATATGG .................................... TCGATGAATGATGCGCGCCAGCGGTAACGCGTGGGATGT 3100938 36 100.0 36 CGTGGGATGT .................................... TCTGAAAATTCGTGGTCAACGAATTGTCGTCGAAAT 3101010 36 100.0 35 TCGTCGAAAT .................................... ACGGGCCGTGGGGCACTTACGGCGACGGCGCACAT 3101081 36 100.0 37 CGGCGCACAT .................................... CCCCTAGCCACGCCTGCCGTGCCATGCCGCGCCGCGA 3101154 36 100.0 34 CGCGCCGCGA .................................... TAGAAGGTGATCACTGGAAGCACGGCGCTTGCGA 3101224 36 100.0 36 GCGCTTGCGA .................................... TTGGTCAAAAGCTGTCGCCCAAGCATGAGGCAAAAA 3101296 36 100.0 41 GAGGCAAAAA .................................... ACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTATG 3101373 36 100.0 38 ACCCTCTATG .................................... GTGCAAGAATTCCGGGTTGCAGTGCAACACGGTTTTAA 3101447 36 100.0 ACGGTTTTAA .................................... TCTATGGACA ========== ====== ====== ====== ========== ==================================== 29 36 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [35.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [112,46] Score: 0.18/0.18 # # Final direction: R [0.18,1.42 Confidence: HIGH] >NC_015760 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1168310 28 100.0 33 NNNNNNNNNN ....A...T.................G. CTGAAGAAGTACATGAGATAGGACGTAAAACTA 1168371 28 100.0 33 NNNNNNNNNN .......T...................A CTTACAGATGGAATTTCTGGTTTAACAGGTTCA 1168432 28 100.0 33 NNNNNNNNNN ..........T..A.....A........ ATTTTGAAGATGCTGTCAAAATTTGCATCCGTA 1168493 28 100.0 33 NNNNNNNNNN .......T.................... GTCGCTATGGGGGCTAAAGGCGATGACTACCGG 1168554 28 100.0 33 NNNNNNNNNN ............................ TTGCTAAAAGACGACTTCTACTTTAACCGAGGG 1168615 28 100.0 33 NNNNNNNNNN ............................ AAGGCTGGCTTGTCCTCGGTGGTCGCTTTCGTG 1168676 28 100.0 33 NNNNNNNNNN ............................ CAGCGTGCAGAGCTAGACGCCCACTGTCAAGCG 1168737 28 100.0 33 NNNNNNNNNN ............................ GACCAAGAAAAGTTGGTGCTGCTTGCTAGAACG 1168798 28 100.0 33 NNNNNNNNNN ............................ GCTACTTGATCTTGAGTAAGGTTGTTAACTGTA 1168859 28 100.0 33 NNNNNNNNNN ............................ TGGCCAAAAGATTGATGCTGTGACTGATGTGGA 1168920 28 100.0 33 NNNNNNNNNN ............................ TGAATCTGTCCAGTCTTCATTGTCTAGCAAGGA 1168981 28 100.0 33 NNNNNNNNNN ............................ GGGTGCTAAAGTCCTTGGTAAACGAGCACTTGG 1169042 28 100.0 33 NNNNNNNNNN ............................ TAACCCAATAGATTTCCAAGCATTCCCTAACTA 1169103 28 100.0 33 NNNNNNNNNN ............................ TCCCCGTAAAGTTCGGCTTGGTCAAAAACTGCG 1169164 28 100.0 33 NNNNNNNNNN ............................ TAAGAAACACATGGGTAAGGGTTATGTCGATAG 1169225 28 100.0 33 NNNNNNNNNN ............................ CCTATATTTTGTCTATCTTTCTACACTTAACCG 1169286 28 100.0 33 NNNNNNNNNN ............................ GTTTTTGGTTAAATGAAATCTAACTGGCTTGTA 1169347 28 100.0 33 NNNNNNNNNN ............................ TGATTGTAGATGGTACATGCGTGCGATGCTTGA 1169408 28 100.0 33 NNNNNNNNNN ............................ GCTGTATTTACCGCCTCTTTTGGCTCAGAATCG 1169469 28 100.0 33 NNNNNNNNNN ............................ AAGGGCATTAGTCAACTTGAATTAGCAAAAATG 1169530 28 100.0 33 NNNNNNNNNN ............................ AGCTTTATCCAACTCCTGTTCAGACTTTTCTTG 1169591 28 100.0 33 NNNNNNNNNN ............................ GCCTAAAGTTAGATATTTACCCTCAGACTTTCG 1169652 28 100.0 33 NNNNNNNNNN ............................ TTAGAGTGCGTTTGAAGAACCTGCCAGAACTTG 1169713 28 100.0 33 NNNNNNNNNN ............................ GGTCTTCTGCAAATTGAATGATGTCGTTATCTG 1169774 28 100.0 33 NNNNNNNNNN ............................ AAACCCCAAAAATACCGTCTGGTTTCTGTACCA 1169835 28 100.0 33 NNNNNNNNNN ............................ TCTAGATTTCCAGGGCTGTATCCACCCGATCCG 1169896 28 100.0 33 NNNNNNNNNN ............................ ATTCACAGTTGCTTCTGTTGCTGCCGGTCTATG 1169957 28 100.0 33 NNNNNNNNNN ............................ TACCGCAATCACTCAGACTGATAGCAAAATCAG 1170018 28 100.0 33 NNNNNNNNNN ............................ TCTGCATTGTACAAACGGAACAGCTCTCTAGTG 1170079 28 100.0 33 NNNNNNNNNN ............................ TTGTTGAGGTTGAGAAGCTTCGGTTTGCGTCTG 1170140 28 100.0 33 NNNNNNNNNN ............................ TGTTTGGTATCTTCAAAACCTTGACTTACTTGG 1170201 28 100.0 33 NNNNNNNNNN ............................ CTGCTGGTTGAGCGTCCGCCACCGGCTGTGTTG 1170262 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 33 28 33 GGATCACCCCCGCGTGTGCGGGAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [7,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-9.30,-10.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [63.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [366,22] Score: 0.18/0.18 # # Final direction: R [0.55,1.05 Confidence: LOW] >NC_015846 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1229984 36 100.0 30 TCGGTCCTAC .................................... CGGAAAGGATTACACGTACTATATGCAAAT 1230050 36 100.0 30 ATATGCAAAT .................................... TAATACCTAGGTCTGTAGTTGAGAGTGGAA 1230116 36 100.0 30 GAGAGTGGAA .................................... ACTTGAAAAAATATTAAATTTTAAACTACC 1230182 36 100.0 30 TTAAACTACC .................................... TACTATCATATAAATGAATTTTTTTCTACC 1230248 36 97.2 30 TTTTTCTACC ..................T................. AGATTATCATCTTTGTATCGTTCCTTGCAG 1230314 36 100.0 30 TTCCTTGCAG .................................... AAATTATTACTTTGAATTTAATGTTAAGGT 1230380 36 100.0 30 ATGTTAAGGT .................................... TAAAACCCAATTTGGTAAAGATTTATCAGG 1230446 36 100.0 30 ATTTATCAGG .................................... TTCTTCGGAATCTCTTAATTTGGAATTAGG 1230512 36 100.0 30 TGGAATTAGG .................................... ATTTTTTTCAAAAGAGGTTATAGCTAAAGA 1230578 36 100.0 30 TAGCTAAAGA .................................... TATCGCCAATCACATCTGATGGGGATATTA 1230644 36 100.0 31 GGGGATATTA .................................... CTGTTGGACAGAGTGGTCAATCTCAGCAATG 1230711 36 100.0 CTCAGCAATG .................................... GGCATTAGTG ========== ====== ====== ====== ========== ==================================== 12 36 30 GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.30,-7.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [665,284] Score: 0.18/0.18 # # Final direction: R [0.18,0.37 Confidence: MEDIUM] >NC_015846 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1229653 37 100.0 29 TTGGGATACT ..................................... AAGCGGTAAAAAACAAAATTTTGCAATTA 1229719 37 100.0 29 TTTGCAATTA ..................................... TATGCAGGATTCCGACCGTATTCGGTTTA 1229785 37 100.0 29 ATTCGGTTTA ..................................... TGATAGCCATTTTAGCCGACTTGTGGAGT 1229851 37 97.3 CTTGTGGAGT G.................................... TTTGGTAAAA ========== ====== ====== ====== ========== ===================================== 4 37 29 TGTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.30,-7.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [334,470] Score: 0/0.18 # # Final direction: F [0.41,0.37 Confidence: LOW] >NC_015846 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1230829 36 100.0 30 NNNNNNNNNN A.AAAA.C.CA.GAAT.................... CCAGTTAATCTTAAAACCTGCATATTTCTG 1230895 36 100.0 30 NNNNNNNNNN .................................... GCGCCAAGCATGGCCGAGTACAATGCATCC 1230961 36 100.0 29 NNNNNNNNNN .................................... CTACCCTACTCGGTTCCTCGCCCCGTGTC 1231026 36 100.0 30 NNNNNNNNNN .................................... CTAAGTGGTTTTTACCCCAAAATAGAGAGC 1231092 36 100.0 30 NNNNNNNNNN .................................... TCAATGACATGTCCAAAAACAGTGTGCTTG 1231158 36 100.0 30 NNNNNNNNNN .................................... AAAAATGTTATTGTTACCATATTTGAATAC 1231224 36 100.0 30 NNNNNNNNNN .................................... GGGTTACAGGTGTGTATTACGACAACTGCT 1231290 36 100.0 30 NNNNNNNNNN .................................... TTTCTTCAGTTGGTTTTTTTCAAGAGAACA 1231356 36 100.0 30 NNNNNNNNNN .................................... CAATACCCAGCTGAACCATTTCCGCCCTTA 1231422 36 100.0 30 NNNNNNNNNN .................................... CAATATGATAGGAGAAGCAGAAGAAGACGT 1231488 36 100.0 30 NNNNNNNNNN .................................... TTTGAATGCCGTGATTTGGCGGTTAATGCT 1231554 36 100.0 30 NNNNNNNNNN .................................... TTCAAGCACGCCTTTTTCACGATGGATACT 1231620 36 100.0 30 NNNNNNNNNN .................................... ATTAAGTCAAGTTGCATCAACTCTAATAGA 1231686 36 100.0 30 NNNNNNNNNN .................................... CGTTTTTTACTTCTTGTTTTATATAATCAA 1231752 36 100.0 30 NNNNNNNNNN .................................... TTATGGAAAGAATTTTAAAACAATTAGAAA 1231818 36 100.0 30 NNNNNNNNNN .................................... CAGCTCGTATGTGGCAAGTTTGTATCACAA 1231884 36 100.0 30 NNNNNNNNNN .................................... TTGTTTGCTTCCCGCCATAATAACTAATCG 1231950 36 100.0 30 NNNNNNNNNN .................................... ATCCGCTTCCATTATAACATAATCTCTGTC 1232016 36 100.0 30 NNNNNNNNNN .................................... TACCAAAACGTCGATATTGGTCAAGTTGGA 1232082 36 100.0 29 NNNNNNNNNN .................................... TTTTCTGAAGTATAAATTGCCCTTTCACA 1232147 36 100.0 30 NNNNNNNNNN .................................... TAAAGAAAAAACATTAAAGGCTGACAGAGG 1232213 36 100.0 30 NNNNNNNNNN .................................... GCTCATTATTACCTCCAAAATATTGAACTT 1232279 36 100.0 30 NNNNNNNNNN .................................... CTCAATTTGAGGGGAATTGGAAAGCAATTA 1232345 36 100.0 30 NNNNNNNNNN .................................... CCAATAATGCGTGGATTGGCTTCAAATTCG 1232411 36 100.0 30 NNNNNNNNNN .................................... CCTGCACTGGGGCGGTGGACGGTCTCGGGT 1232477 36 100.0 30 NNNNNNNNNN .................................... ATCAGCCGCTTGTGTTTGCATCGGCTTGCC 1232543 36 100.0 30 NNNNNNNNNN .................................... ATGCACAAATTCATCAAATTGATAACAACA 1232609 36 100.0 30 NNNNNNNNNN .................................... CAAGAAGTATCTGAAATAGATGTACATAAA 1232675 36 100.0 30 NNNNNNNNNN .................................... GAATGAAAGCTGATGCTCAAGTTCTGCAGT 1232741 36 100.0 30 NNNNNNNNNN .................................... ATGAAAATCGCCGCCGAAGGAGGGCGTTTA 1232807 36 100.0 30 NNNNNNNNNN .................................... ATTCAAATGAATCACAAAATTATTATCCAT 1232873 36 100.0 30 NNNNNNNNNN .................................... CCTGAATTTGTTCTTATAGAAAATGTTCCC 1232939 36 100.0 30 NNNNNNNNNN .................................... AATACAAATGAAAATAGATAAACATATTAT 1233005 36 100.0 30 NNNNNNNNNN .................................... CAAATAAAAATGTATAACCATTAAAATCAA 1233071 36 100.0 30 NNNNNNNNNN .................................... AATAGTTTATTTTTTATAAACAAGAATTAT 1233137 36 100.0 30 NNNNNNNNNN .................................... CAATACTTCCTATTCCTATTTTTTTTATAC 1233203 36 100.0 30 NNNNNNNNNN .................................... GTCAAAATAGTCGTAATCCGCTTGTTTTAA 1233269 36 100.0 30 NNNNNNNNNN .................................... ACTTGCAAGAATATTACGAAGAACGTTGCT 1233335 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 39 36 29 GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.30,-7.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [235,60] Score: 0.18/0.18 # # Final direction: R [0.18,1.05 Confidence: HIGH] >NC_015846 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================================== ====== 1569844 38 100.0 39 NNNNNNNNNN AG..CT.TCGCAA........................G AGTTACAACAAGTATTTTTTCGGATAAAGGATAAACGCT 1569921 38 100.0 39 NNNNNNNNNN ..................A...T............... AGTTACAACTAGATTTTGATAATTATTACATAATGGATA 1569998 38 100.0 39 NNNNNNNNNN ..................A...T............... AGTTACAACAACCAAAGAAATAGCGAAAACACAACGCTA 1570075 38 100.0 39 NNNNNNNNNN ..................A...T............... AGTTACAACAAATTGCGATTGAATGACGCTGCCGTCTTC 1570152 38 100.0 39 NNNNNNNNNN ...................................... GGTTACAACCAAATATAAAACATTTTTGTTCACAATGCA 1570229 38 100.0 40 NNNNNNNNNN ...................................... GGTTACAACTTCTCTGTTTTTGAGTTCGCAATATACTGCA 1570307 38 100.0 39 NNNNNNNNNN ...................................... GGTTACAACTTGACATTTTTATTAGAATAAACCGCCTCT 1570384 38 100.0 39 NNNNNNNNNN ...................................... GGTTACAACTCAAAATCTAAAAACCTATCAAAATCACTT 1570461 38 100.0 39 NNNNNNNNNN ...................................... GGTTACAACAAGGAGAAAACATTAGTAAGTATGATTTAA 1570538 38 100.0 39 NNNNNNNNNN ...................................... GGTTACAACTAATAAAATCAGATTTAGAGAAATACAAAT 1570615 38 100.0 39 NNNNNNNNNN ...................................... GGTTACAACGCGGCTTGGTCATGGCTGATAAACTGGCCA 1570692 38 100.0 39 NNNNNNNNNN ...................................... GGTTACAACCAAATATAAAACATTTTTGTTCACAATGCA 1570769 38 100.0 40 NNNNNNNNNN ...................................... GGTTACAACTTCTCTGTTTTTGAGTTCGCAATATACTGCA 1570847 38 100.0 39 NNNNNNNNNN ...................................... GGTTACAACTTGACATTTTTATTAGAATAAACCGCCTCT 1570924 38 100.0 39 NNNNNNNNNN ...................................... GGTTACAACTCAAAATCTAAAAACCTATCAAAATCACTT 1571001 38 100.0 39 NNNNNNNNNN ...................................... GGTTACAACAAGGAGAAAACATTAGTAAGTATGATTTAA 1571078 38 100.0 39 NNNNNNNNNN ...................................... GGTTACAACTAATAAAATCAGATTTAGAGAAATACAAAT 1571155 38 100.0 39 NNNNNNNNNN ...................................... GGTTACAACGCGGCTTGGTCATGGCTGATAAACTGGCCA 1571232 38 100.0 39 NNNNNNNNNN ...................................... GGTTACAACGTTAGGTATAACTTGTTCAACTGAAAGTAT 1571309 38 100.0 39 NNNNNNNNNN ...................................... GGTTACAACTTGGCTCCAAAATTACAGGTGAACGATGTA 1571386 38 100.0 39 NNNNNNNNNN ...................................... GGTTACAACTTTACCTCAGGAAAACAGCTGAAGAACAAA 1571463 38 100.0 39 NNNNNNNNNN ...................................... GGTTACAACTAAACAATATTGAGTTTGGCATAGAAACCT 1571540 38 100.0 39 NNNNNNNNNN ...................................... GGTTACAACTCAGATCGCCGAATATTATGATCCCGCTTC 1571617 38 100.0 39 NNNNNNNNNN ...................................... GGTTACAACTCCACGGCAGGTTGGATTTTACATTGGTTA 1571694 38 100.0 39 NNNNNNNNNN ...................................... GGTTACAACTATTGAGCGGATTTCTTCTATTTCTATATG 1571771 38 100.0 39 NNNNNNNNNN ...................................... GGTTACAACCTCTACCTGTGTGTTTCCTATGGATTTGTG 1571848 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACTTACCGTCTTCGGTAAATTGAAATAGACCA 1571925 38 100.0 39 NNNNNNNNNN ...................................... GGTTACAACGCTGAAAGGTGGGGCAAAAAAAAATATTAA 1572002 38 100.0 39 NNNNNNNNNN ...................................... GGTTACAACACTTTGTATTTTGAAGAGGTTACACGAAGA 1572079 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACTTTTTACCCGTCGTACCATCGGCAGTATCT 1572156 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACCGACCCGCCTTACAATGTAGATTATCAAGG 1572233 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACATTTCTAAAGAACTCGTCAATTTCTTTTTT 1572310 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACTTATGTTTCCACTTTTAGGTTTAAAATCTC 1572387 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACATAGCCAAAGCAGGAACCATTCCTGTTGTA 1572464 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACAGGTGCTTTATATATTTACAAAAGAAATGT 1572541 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACTGGTATCTAAACAGGGCAGAGAATAACAGA 1572618 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACAATGCACCTATTTTAGTGTTTGAAGAGCCT 1572695 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACGGTACAACCATTTAGGTAGGTACCCCACAC 1572772 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACTATCTGTTTTTATTTCCCCCAAAAACCTGT 1572849 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACTTAGAGATAGCAAAGGGATTAAAAGAAATA 1572926 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACCCATCGGATATATTTAATAGGCAAATCAGA 1573003 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACTCCACTAGTAGTTTCTACAATGGTAGCACC 1573080 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACTATGATTTGGAAGCTACTGCGGGTTTAGTA 1573157 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACACTATAAATGGAGATTATCTTTATTCTTAT 1573234 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACGTTTGGTAGTCAGTTTCGAGCCATTTCATT 1573311 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACCATCTACTTCTGTTTGATGCTGATTAAGTA 1573388 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACGATAGCCCTCTAATTCTTCAACGGTAGTGA 1573465 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACTAATGGAGAGGCGGAAACTTCAGCTCAATC 1573542 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACAGTAACCGCTCGGCGGTGATGGTAGTGATA 1573619 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACAAGACCCATTTTGGAACGTGTAGGTTAATA 1573696 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACAACAAAACATCGAAACATTTAAAAAAATAT 1573773 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACAATAAGGGTCTGACTTTGTTAAACACGCTA 1573850 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACCTACTTAATATAGAAAAAGATTTAAAACTA 1573927 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACAAATTACATTGACATTCGCTTTAATTTCAG 1574004 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACTAAAGGCAATAAATATTGTTTAAGGATAGA 1574081 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACTTCAAAACCTGCTCTTTCCAACCCCAAACT 1574158 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACCTTCTCTGTAGATTGCGGTGCGTAGAGTTC 1574235 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACAATGCTGTAGCTCCACCCGAGATGAAATTG 1574312 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACCGAAGAAATCATTCTTACTCCAACTCAACC 1574389 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACCGGCTTTCTTTTGTTTTACTGCTTGCTGCT 1574466 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACTCTACTTATTTTCTTTTTCCTTATCATTTT 1574543 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACCATTTTACTTTTGGCATTGTTATTCGTACT 1574620 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACCGATTATAGTCTATTGTTATCGAAAGAATT 1574697 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACCAGATTAGAAAAGATATACCTCGTTTAATG 1574774 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACTATTGGGGTCGAATAGTGGTAATATCTCCA 1574851 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACAATTTAGATAACGGAATACACGACCCAAAA 1574928 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACTGGTCATCGTTTGCCCCTGGGAGGCTATCA 1575005 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACATTACCTCTTTATCTACAAATTCAAAATCA 1575082 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACACTCTCCACCTTGTTCGTGAGATTTACCCT 1575159 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACAAACAAAACAAACCACGAAAATACATTATA 1575236 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACTTTCTGACGATGCAATCTGTAAATAAGGTA 1575313 38 100.0 39 NNNNNNNNNN .....................................G AGTTACAACTTTTTAACACCATGCCCCAAACCTTGAGCC 1575390 38 100.0 39 NNNNNNNNNN .....................................G AGTTACAACGAGCTGGAATTATTTCCACCAGCGTTGCAA 1575467 38 100.0 39 NNNNNNNNNN .....................................G AGTTACAACCTACATTGCCATTGTGGGAGATACTTATAC 1575544 38 100.0 39 NNNNNNNNNN .....................................G AGTTACAACAGTATGATGAATATGCTTTACGGAGATATT 1575621 38 100.0 39 NNNNNNNNNN .....................................G AGTTACAACAGTAAAAAAAGATGGCACCACGAAAGGGCT 1575698 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACTAACAATGAAAAAGAAGAACTGGCTAATCT 1575775 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACAACACAAGACCACTTCGGAGACGAGGGATT 1575852 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACTTGGGCGCTTGCCAGCCGCATTGCTGACCC 1575929 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACTTGAATGTTATTGCACCTGATGGTAGTATA 1576006 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACGCATCACGAACAAGCATTTCATAATTTGGT 1576083 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACAAGCTAAATATTTATTGATGTTTGACGCTT 1576160 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACACGCATCAATTAACACTGAAACTGTAGCGT 1576237 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACCATAATCTGTAGTTTTTGATTATCAGTTGC 1576314 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACTCATCTTTTAAATTGTATGTTAATATATCA 1576391 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACCATACGAAGAGAGATCTCAGCCTTGCAGGA 1576468 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACAATATTGAATTTGGTTATGTCTTTTTGATA 1576545 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACGGCAGTTGATTATTTAAGAACTCATCTGTA 1576622 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACTTGGGGTATTTTTTGTTTTCGTGTTACACA 1576699 38 100.0 38 NNNNNNNNNN ...................................... AGTTACAACATCTAATTTAACGTCATCATTTATGTAGA 1576775 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACGTACGCAACATAAGGATATGGTAAGCTGTG 1576852 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACTATACCAAAAGAGGGAGATGAGTTGGTAGT 1576929 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACAACTCTGATATAACAATAAATGTCTATGGA 1577006 38 100.0 38 NNNNNNNNNN ...................................... AGTTACAACACATACTTATTGCTTTAGTGGAAGTTATC 1577082 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACTTATAAATATTATAAAATTATTTGTTATGA 1577159 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACCGATAATTTCACCGTTATCAATCATATATC 1577236 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACACCAAAATCATTGATTCTTGATAAACTTTC 1577313 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACTGGCCTTGAGCTGGGTCTGCTCCTGTGTGA 1577390 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACGTATTCCAAAGGGTTTTGAACTCCTGCAAA 1577467 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACACAAATGATTGATTTTTGAACCATTACCTT 1577544 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACTGTGGTATATGAAAGGATACCATCACTACC 1577621 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACGCCGAGAAAAAAGAAGCCGACATTTTAATG 1577698 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACGACTCGCCCGAAAACGATGATTGTGGCGAA 1577775 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACTCACAAATGCAACAAGCCGCCAATGACCGA 1577852 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACATTGTCATCTGTTAATTGTACATTGTTAAT 1577929 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACACGTACCAAATCACAACTCAACACATCAGA 1578006 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACTGGAATGAAAACCCTTTCGTTTGGGTATAT 1578083 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACGGAACTTGCCTGTTGAAAGTTTTGCTGAAA 1578160 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACGTTGGACTTAAAGTCTTTGGAAATGGAAAA 1578237 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACTCCATTTCGTATTTTTTGAATCATTTCGTA 1578314 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACATTTTTATTTTAGCATCAAATTTGGTTTCG 1578391 38 100.0 39 NNNNNNNNNN ...................................... AGTTACAACCTGGGAGTTATTCTGGTTTTAAATGCTAAA 1578468 38 100.0 1 NNNNNNNNNN ...................................... NNNNNNNNNN ========== ====== ====== ====== ========== ====================================== 113 38 39 GTTGTAAATTGCTTTCAATTTTCCGTAACTTTGTGATT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:71.05%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [400,123] Score: 0.18/0.18 # # Final direction: R [0.18,5.28 Confidence: HIGH] >NC_015846 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================================== ====== 1577159 47 100.0 30 TTTGTTATGA ............................................... CGATAATTTCACCGTTATCAATCATATATC 1577236 47 100.0 30 ATCATATATC ............................................... ACCAAAATCATTGATTCTTGATAAACTTTC 1577313 47 100.0 30 ATAAACTTTC ............................................... TGGCCTTGAGCTGGGTCTGCTCCTGTGTGA 1577390 47 100.0 30 TCCTGTGTGA ............................................... GTATTCCAAAGGGTTTTGAACTCCTGCAAA 1577467 47 100.0 30 CTCCTGCAAA ............................................... ACAAATGATTGATTTTTGAACCATTACCTT 1577544 47 100.0 30 CCATTACCTT ............................................... TGTGGTATATGAAAGGATACCATCACTACC 1577621 47 100.0 30 CATCACTACC ............................................... GCCGAGAAAAAAGAAGCCGACATTTTAATG 1577698 47 100.0 30 CATTTTAATG ............................................... GACTCGCCCGAAAACGATGATTGTGGCGAA 1577775 47 100.0 30 TTGTGGCGAA ............................................... TCACAAATGCAACAAGCCGCCAATGACCGA 1577852 47 100.0 30 CAATGACCGA ............................................... ATTGTCATCTGTTAATTGTACATTGTTAAT 1577929 47 100.0 30 CATTGTTAAT ............................................... ACGTACCAAATCACAACTCAACACATCAGA 1578006 47 100.0 30 ACACATCAGA ............................................... TGGAATGAAAACCCTTTCGTTTGGGTATAT 1578083 47 100.0 30 TTGGGTATAT ............................................... GGAACTTGCCTGTTGAAAGTTTTGCTGAAA 1578160 47 100.0 30 TTTGCTGAAA ............................................... GTTGGACTTAAAGTCTTTGGAAATGGAAAA 1578237 47 100.0 30 AAATGGAAAA ............................................... TCCATTTCGTATTTTTTGAATCATTTCGTA 1578314 47 100.0 30 TCATTTCGTA ............................................... ATTTTTATTTTAGCATCAAATTTGGTTTCG 1578391 47 100.0 30 TTTGGTTTCG ............................................... CTGGGAGTTATTCTGGTTTTAAATGCTAAA 1578468 47 100.0 AAATGCTAAA ............................................... CTCAAAAAAT ========== ====== ====== ====== ========== =============================================== 18 47 30 GTTGTAAATTGCTTTCAATTTTCCGTAACTTTGTGATTAGTTACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.21%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.70,-2.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [81.7-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [4661,114] Score: 0.18/0.18 # # Final direction: R [0.18,4.87 Confidence: HIGH] >NC_015848 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3181323 36 100.0 39 NNNNNNNNNN CC.CAAC.G.GAAGAGCC.................. AGACACAAACCCGCGCACCGGCAGAAGCCCACTACCAGA 3181398 36 100.0 36 NNNNNNNNNN .................................... TGATGGTGATTCGGTGGTCCTCACCTATCACGGAGA 3181470 36 100.0 40 NNNNNNNNNN .................................... TTGACAGACGCGTGCTTAGCCGACGCGCGCTTGTTCGATG 3181546 36 100.0 35 NNNNNNNNNN .................................... GTGGGCCAGACAATCCGGCCGACGCTACCCTTCTG 3181617 36 100.0 45 NNNNNNNNNN .................................... TCTGACGACTTGCCGCCACCGACACCGATCAGGCCGTGTCGTGAT 3181698 36 100.0 35 NNNNNNNNNN .................................... CTGCGGGCTCGTCATGACCGGATCGCCGCGCAGAA 3181769 36 100.0 39 NNNNNNNNNN .................................... GTACAGGAGAACACCGAACACCACTTCGACCTCTGGATG 3181844 36 100.0 39 NNNNNNNNNN .................................... GACACGCCAACGCGCCGCCGTCGCCGGGCAACAACCAGT 3181919 36 100.0 37 NNNNNNNNNN .................................... CACTGGGACAAGAAAACTGAAACCCGTTGAAACACAC 3181992 36 100.0 40 NNNNNNNNNN .................................... CTCGGCTGGAAAAAGGCGCGCGACAACCGCATTGTCAAGC 3182068 36 100.0 37 NNNNNNNNNN .................................... TTGAATTGATCACAGTCCAAACATTTGGCGTCAACTA 3182141 36 100.0 39 NNNNNNNNNN .................................... CTGTTAGGCATAAGCACACCAGCACCTCCCTTGGCAAGG 3182216 36 100.0 36 NNNNNNNNNN .................................... ATTAGGCGACTACGAACACACGCCTCAGCCCGGGGA 3182288 36 100.0 31 NNNNNNNNNN .................................... GTGAACGAAACCCGCGGCGGCACAATCGAAG 3182355 36 100.0 38 NNNNNNNNNN .................................... CCGCACTCTACTGCCGCACAGCTCGCTATGTACGCCAA 3182429 36 100.0 39 NNNNNNNNNN .................................... GCTACGCGACCACCACATCCGCAACCGCGCCGCCATCGA 3182504 36 100.0 38 NNNNNNNNNN .................................... TTTTTTACCCGGATACAGGCGAAACCGTCCATGCTGCT 3182578 36 100.0 41 NNNNNNNNNN .................................... TGAAAGACCAGCCCACATGGCCCAATACAGCGTCGTTGAAG 3182655 36 100.0 36 NNNNNNNNNN .................................... GGTTGCTGGATTCGCCCGTCGCTGCAATTTACTGAA 3182727 36 100.0 33 NNNNNNNNNN .................................... TCGCCTTCGCCTGATCAGGCGTAATCGCCACAT 3182796 36 100.0 36 NNNNNNNNNN .................................... TTGACCGGCGCGGACTTGATCCGCGCAAACTTGTCG 3182868 36 100.0 35 NNNNNNNNNN .................................... ATTGAGGCTGGAAACGACGACGCGCTAGTCGGAAT 3182939 36 100.0 39 NNNNNNNNNN .................................... CTTCTGCGACGACCACTGGCGCGAATGTGCTTCCGGTAT 3183014 36 100.0 38 NNNNNNNNNN .................................... CTTCACGGACCTGTTCGTGGTCGTGCCCGATGACGCGG 3183088 36 100.0 36 NNNNNNNNNN .................................... TTCTGAGCCGTGGACCTCGACGCGTAGACCTTGTTG 3183160 36 100.0 39 NNNNNNNNNN .................................... ACAGAGGTCTACGCTTCGCATCCATGGGGTCAGCACCGA 3183235 36 100.0 39 NNNNNNNNNN .................................... CCGAGTTGGCCGCGGCCTAGTGGCCGCATCGAGCACCGC 3183310 36 100.0 38 NNNNNNNNNN .................................... ATCGCGGTCAACGGCGTCAAGTCATGGAAGATCACCAA 3183384 36 100.0 35 NNNNNNNNNN .................................... TTCTCGGCGCCGCCGGGGCCGCTACCAGCGGGCAT 3183455 36 100.0 37 NNNNNNNNNN .................................... AATACCACGCAGTCGACGAATGCAACGACACCTCCAA 3183528 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 31 36 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [30.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [559,50] Score: 0.18/0.18 # # Final direction: R [0.18,1.42 Confidence: HIGH] >NC_015850 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1236314 28 100.0 32 NNNNNNNNNN .CGAA........CT............A CAGCGAAAAACGACAAGGAAATCGAGACCTGG 1236374 28 100.0 33 NNNNNNNNNN ....C....................... CCCGACAGCCAGGTGGTTGCCGGTTTCTCGGAA 1236435 28 100.0 33 NNNNNNNNNN ............................ GACGGATCCTTACGAGACCTGGCCGCCGGTGGA 1236496 28 100.0 33 NNNNNNNNNN .............A..T.....A....T CGTTCCAGTCTGTCGCTCCCTCGGGGATCTCAA 1236557 28 100.0 33 NNNNNNNNNN ............TA.G............ TAGCCCCGCTTGCCTGCCAGTCCTTGCGCCAGC 1236618 28 100.0 26 NNNNNNNNNN ............................ CAGGAGCAGGCATGGCTATCTATCAC 1236672 28 100.0 33 NNNNNNNNNN .............A.G............ GGGTTATGGGCCTCGAGAATGTGCTCCTCGCCG 1236733 28 100.0 33 NNNNNNNNNN ............................ CAAGGAAAATCTCGCGAGGAACCCTCTTTGATG 1236794 28 100.0 28 NNNNNNNNNN .............A.G............ CGGTATCTTTAGCCTTGGCAACCAGATA 1236850 28 100.0 33 NNNNNNNNNN .............CT............. GCCCACGAAGTGGTAAACCACGAAGTGGACAGA 1236911 28 100.0 33 NNNNNNNNNN .............A.............. CGCCAGAAACGCTGCGCGGACACGTATTTTCTG 1236972 28 100.0 1 NNNNNNNNNN .............A.............. NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 12 28 31 GGTTTTCCCCCGCGCACGCGGGGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.40,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [12-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [46,107] Score: 0.18/0.18 # # Final direction: R [0.27,0.96 Confidence: MEDIUM] >NC_015850 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1234131 28 100.0 33 NNNNNNNNNN .............A..T........AG. CGATTATCCACCAGATGGTCTGCTACCAAATCG 1234192 28 100.0 33 NNNNNNNNNN ....C.........T............. CCTATTGGCCCGCGAACCACCGAGCCACTGCAT 1234253 28 100.0 33 NNNNNNNNNN A............A..........T... TTCCCAAAATCTCCAACAGAGACAACCCCGCAA 1234314 28 100.0 32 NNNNNNNNNN ....C........A..TTGC...GACGA AAGCGCAGCAAATGCGAAATGCGGATTGCAAA 1234374 28 100.0 33 NNNNNNNNNN AAG......................... CCATCGCTGGAATGGTGTGCATGAGCCGCGTAC 1234435 28 100.0 35 NNNNNNNNNN ..............T............. TCCTCCACATGGCGGAATCCAGGGAGCTCAAGGCG 1234498 28 100.0 27 NNNNNNNNNN ............................ GATGATTGACCGGCTTACGTCGGAACG 1234553 28 100.0 33 NNNNNNNNNN ....C........AT..........TGA CGGCTCAAGCTGCAAGGCCGCGGGCTGGACCCC 1234614 28 100.0 35 NNNNNNNNNN A.G..............A.......... ACGCCACCGGCTGCGTTCCGCGCCATACTGTAAGA 1234677 28 100.0 33 NNNNNNNNNN ............................ GGTATTATTCAAGGTCGTAGACGCTTTCATGAC 1234738 28 100.0 33 NNNNNNNNNN ............................ GGCTGGTGCTCGGTAAGAATTTCCCACAGTCGC 1234799 28 100.0 33 NNNNNNNNNN ............................ AGTGCGTCGTCTGGACTTATCGCCTCATCTTCG 1234860 28 100.0 33 NNNNNNNNNN ............................ AGAACAGAGACCCCAGAAACACCCTGATATCGC 1234921 28 100.0 33 NNNNNNNNNN ............................ GCGGCAGATATTCCAGCGCCGCGGACTTGGGAC 1234982 28 100.0 33 NNNNNNNNNN ............................ GGCATCCACCATGCTACAGAGGCTTGGTATGAC 1235043 28 100.0 33 NNNNNNNNNN ............................ CCCAGATTCGTGTTGCCGGTGGCCGACTTGTGG 1235104 28 100.0 33 NNNNNNNNNN ............................ GCAACCAGCCGTTAGCGCGGCCAGCCTGTCGGC 1235165 28 100.0 34 NNNNNNNNNN ............................ TGGCCTGCGTGGTAGTCGCTGTCCAACTCGCTTC 1235227 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 19 28 32 GGTTTTCCCCCGCGCACGCGGGGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.40,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [24-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [33.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [21,42] Score: 0/0.18 # # Final direction: R [0,1.05 Confidence: HIGH] >NC_015865 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 131235 29 100.0 37 TTACCCATAG ............................. GTCATACCAAAAGCAGTCGTGGGTGCGGGGGTCTCTG 131301 29 100.0 41 GGGGTCTCTG ............................. TATTCCTCTGACCCACAAGCACGGTTGTATGGCAGGTTATT 131371 29 100.0 38 GCAGGTTATT ............................. TTCGAGGACCGCGAGCCTTTCCTTCTCCTCAAACTCCT 131438 29 100.0 36 TCAAACTCCT ............................. AGAGGGTCCGAGGTTATCCCCATGTCATACGTTCCA 131503 29 100.0 39 ATACGTTCCA ............................. CCCGACCAACGACGAGGCAAAGGCCCTTTTCGCCAACCT 131571 29 100.0 42 TCGCCAACCT ............................. CAAAAAGCGGTTTCTCCTCGCTCATTGGCTCCCGACCTCCTC 131642 29 100.0 38 CGACCTCCTC ............................. AAGACGTTGGAATAACCCATTTCCGAACTCTCGAACCT 131709 29 100.0 40 TCTCGAACCT ............................. CAAAACATGCAGGCTGTGGGCGCAGGGGGAGAAAAGTTTT 131778 29 100.0 40 GAAAAGTTTT ............................. GGGAACCGACGCCGGAACCGGTGTACATAGTGGTGGAGAT 131847 29 100.0 38 TGGTGGAGAT ............................. GATTTGCAAAAGGTCGCCTAACTCTTCAGCCACCTTGA 131914 29 100.0 37 GCCACCTTGA ............................. CCGGTGGCCTCGCTACTGATGGACCACATGAGCCTGG 131980 29 100.0 36 ATGAGCCTGG ............................. GAACATAGTTCTAACGACAAAACTTCGGGGGTGGTA 132045 29 100.0 35 GGGGGTGGTA ............................. CCTTGTCACCCACAAGTCGACATACGCTCCGGGCA 132109 29 100.0 36 GCTCCGGGCA ............................. CTGGGATAACTGAAGGGTCCTCAGAGTGGACGGAGT 132174 29 100.0 38 TGGACGGAGT ............................. AACAGAGAAGAGGCGATTAGGCGCACGCTTGAGGAGCT 132241 29 100.0 43 TTGAGGAGCT ............................. TTCAGGAAAGCGATAACGCCGACCCGGACCACCCAATCACCCT 132313 29 100.0 37 CAATCACCCT ............................. GCTTATGGGCGAGCTTGCGGACGATTAGCAACCACTT 132379 29 100.0 36 GCAACCACTT ............................. CCGCGGCCGTCGTCGTGAGCATGAGGGAACACGGCG 132444 29 100.0 36 GAACACGGCG ............................. CCGCGGCCGTCGTCGTGAGCATGAGGGAACACGGCG 132509 29 100.0 39 GAACACGGCG ............................. TGTTCACTACCGAGGAGGTTACGCCGATTTCGAGGACGG 132577 29 100.0 38 TCGAGGACGG ............................. AGAGAAAGTTGAGCATTTGGAGGCACTAGACGACTTCC 132644 29 100.0 36 GACGACTTCC ............................. TACTCCTCCCACGGTTCGGGCGGTTCTGGGAAGTTA 132709 29 100.0 36 TGGGAAGTTA ............................. AAAAGATGGGAGGTGAGGATAGGTGAATGAGGTTGT 132774 29 100.0 42 ATGAGGTTGT ............................. ATTGGCTGCATCGGACGACGAGGAAAAGAAGAAGGAGGTCCT 132845 29 100.0 38 AGGAGGTCCT ............................. CCGGTGTGTTTTTGCGGAGAGTATAGGGCGGCGGTCCT 132912 29 100.0 37 CGGCGGTCCT ............................. AGAACTTTGAGAAGCACCTGAATGTGAAGAAGGCCAA 132978 29 100.0 38 AGAAGGCCAA ............................. ATGACAACAATGAAGTTTATTTTGGTCTAAGGGATAAT 133045 29 100.0 41 AAGGGATAAT ............................. CTACTTCCCTGAGGTCATCGGCCGCCGCCTGAGGAATTACA 133115 29 100.0 37 AGGAATTACA ............................. TCTCGTAGTCCTCGCTTATGTTCTCGATGTAGTTCGC 133181 29 100.0 TGTAGTTCGC ............................. TTTCTCTTTT ========== ====== ====== ====== ========== ============================= 30 29 38 CTTTCCACACAATTCTGTCCTACGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.17%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [102,463] Score: 0.18/0.18 # # Final direction: R [0,0.45 Confidence: MEDIUM] >NC_015865 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 137547 29 100.0 38 NNNNNNNNNN ....T.G.....T.T.............. CTCACCATGTGCCAGGCCCCCAATTACTAAGTTTTACT 137614 29 100.0 39 NNNNNNNNNN ............................. GCCTCGAAACGCTCATCCTGTTCCTCTCGGACGAGTATC 137682 29 100.0 38 NNNNNNNNNN ............................. GAGAACTTTGGAGTTGTCAACGCGAACGTAGGGGCGAG 137749 29 100.0 37 NNNNNNNNNN ............................. TCCTTCACCGTGTACTCCTTCTTGCGAGGGAAGGCGT 137815 29 100.0 37 NNNNNNNNNN ............................. TCCTTTCCACCCGAGTAAAGCACCGCTGGCCTCCTGC 137881 29 100.0 35 NNNNNNNNNN ............................. TAGAGCATGCAAAGGGCGCGTTCCATCGGGTCATG 137945 29 100.0 43 NNNNNNNNNN ............................. GAGCTGAGCCCAGCGCGTCATTCCTCAATCCTCCTTAGAATCA 138017 29 100.0 35 NNNNNNNNNN ............................. AGGATAGGGCCGGGGAAAATCCTCACCGAGACGCT 138081 29 100.0 37 NNNNNNNNNN ............................. ACTACTGCGACGTTGAGAAGCTCGACGGCGAGCGCGT 138147 29 100.0 36 NNNNNNNNNN ............................. CGCCCTGCGCCATGTGGAAGAGGCTAAGGAAACCTG 138212 29 100.0 40 NNNNNNNNNN ............................. TCGATGCAGCGTACTCCAATTACTCATACGTGAGCTTTGA 138281 29 100.0 37 NNNNNNNNNN ............................. ATGGTAGGGCATCAGACGGGGTTTGCAGGTAGTCCAA 138347 29 100.0 35 NNNNNNNNNN ............................. CATAGTATCAGTTAGGCCGAGGGCCTCAGTTAGGA 138411 29 100.0 38 NNNNNNNNNN ............................. CGCCCTTATCCGGCTGTAATTATTGTATAATGCTACGA 138478 29 100.0 38 NNNNNNNNNN ............................. AGAGATACGGGCCGCTGTGTGGAATGCAATTGCAAAAA 138545 29 100.0 37 NNNNNNNNNN ............................. GGAAAGGAGCCGGCCGGTTATAAGCTCGATGTTTACA 138611 29 100.0 37 NNNNNNNNNN ............................. AACGTCGTAATGCTTCCGTTAGATGCACCCCACCCGC 138677 29 100.0 37 NNNNNNNNNN ............................. TCGATGTGATGGAAGTCCACCCGGCGAGGCGGCCGTC 138743 29 100.0 36 NNNNNNNNNN ............................. TGACGCGCCCGCTAAACCCACACCCAGTCAGATGGA 138808 29 100.0 36 NNNNNNNNNN ............................. TTCTTGACCTGCTGGCGTTCCTGACGACAAGGCGAA 138873 29 100.0 41 NNNNNNNNNN ............................. AAAAGCAGCCCCCTGCTCGAGCCATCAGCGCCGGGAGGAGT 138943 29 100.0 39 NNNNNNNNNN ............................. AGGCCGCCCGGTCAAGAAGCGCTACAAGGTGGGGGACAT 139011 29 100.0 35 NNNNNNNNNN ............................. GTGGGTGTTCGTGATGAATACGGCGGTATTCATTA 139075 29 100.0 37 NNNNNNNNNN ............................. TATGAGGGCGTTCCTCAGCCCTTCCCGATACCGGTCA 139141 29 100.0 39 NNNNNNNNNN ............................. CTTGCGGAAGTTCGCGAGGGTCTAAATGAAAATTATGTT 139209 29 100.0 37 NNNNNNNNNN ............................. ATTATCATGTGCCCTGGGAGAGGGTGGATGATGTGGT 139275 29 100.0 37 NNNNNNNNNN ............................. GGACCGAGGACCCGAGGACCCTCGCGGCCGAGTTCGT 139341 29 100.0 36 NNNNNNNNNN ............................. AAAGACGTGTACGCGGAAGTGAACGCAGAGGATGGG 139406 29 100.0 37 NNNNNNNNNN ............................. TTCTTATTGATGAAAAGATAAAGGAAGGGTACTTTTT 139472 29 100.0 41 NNNNNNNNNN ............................. GGTAGTTGATGAGGCAACTCATTATCAATATGTGTTCCGCT 139542 29 100.0 40 NNNNNNNNNN ............................. CCTCGACAAGACGATAGAGGCCATCTGCAAAGCGTGCGGT 139611 29 100.0 39 NNNNNNNNNN ............................. TAGATTTGGGCGATTTCTGAATCGCTGAGGGCGCGCGTA 139679 29 100.0 36 NNNNNNNNNN ............................. TCGGGCCGGCGGTAGCATCACACGGAAGGACCTTTA 139744 29 100.0 38 NNNNNNNNNN ............................. CCGTTCACTCCGGGTGGTGAAAAGATGGCGTCCCCGTG 139811 29 100.0 39 NNNNNNNNNN ............................. CAAATAACTGCTCAAAGGCTGGGTCGACGAAGTATGCTT 139879 29 100.0 36 NNNNNNNNNN ............................. AGCTTACCGTTACTCAGGCCGACGTCTCCGCTATCA 139944 29 100.0 39 NNNNNNNNNN ............................. ACATACATAAGTCGAGGGGTCCGCTCGGAGTTTGGATTT 140012 29 100.0 36 NNNNNNNNNN ............................. TCGATGAAGGACCCGCGAGCATGGAGAGGGACCCCG 140077 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 39 29 37 CTTTCCACACAACACTGTTCTACGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.17%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [145,498] Score: 0.18/0.18 # # Final direction: R [0,0.86 Confidence: HIGH] >NC_015865 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1907425 29 100.0 38 ACTCCCGCCT ............................. GTCGGGAACGCCCAAGTTTATTACGCGGCCGATTACCT 1907492 29 100.0 39 CCGATTACCT ............................. GCGGTTGGCTCATCGGTAGAAACGGGCTCATCTATAATC 1907560 29 100.0 36 ATCTATAATC ............................. GGAGGACGTGGAAAAAGTCGTCAGGGACTTTTTCGG 1907625 29 100.0 37 ACTTTTTCGG ............................. GAGATGAAACGCCGTCTGGACATTGACGATGAAGAAA 1907691 29 100.0 40 GATGAAGAAA ............................. GCGAAAACGGGTCGGGCTCGAACTCATCAAGCTCAAAGGC 1907760 29 100.0 37 GCTCAAAGGC ............................. GTTTACTAGCTCTGGTGCTATCAACGCCCAGGTGTAT 1907826 29 100.0 39 CCAGGTGTAT ............................. GGGAGGACGACGGAGCCCCTCATAGTCGAGGGGAAAGGA 1907894 29 100.0 38 GGGGAAAGGA ............................. GAGTAGGTCCCAGTTTTGTTAAGTAGCGGCTCAATCTC 1907961 29 100.0 39 GCTCAATCTC ............................. GTTGGCCTCGGTCGCGTTCACCTGGGTAAAGGTCGCGTT 1908029 29 100.0 39 AGGTCGCGTT ............................. CTGGTAGAATGTGTTAGGTCCTGGGTTGAGCGTCTAAAG 1908097 29 100.0 37 GCGTCTAAAG ............................. CTGGAATACTTTGTGGACAGCATTCACGCACAAGACG 1908163 29 100.0 GCACAAGACG ............................. GCAGGCGCTCA ========== ====== ====== ====== ========== ============================= 12 29 38 GTTGCAATAAGACTCTGGGAGAATTGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.07%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.60,-0.80] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [51.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [457,167] Score: 0.18/0.18 # # Final direction: F [4.95,0 Confidence: HIGH] >NC_015865 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 345768 30 100.0 36 AAACCGCCCT .............................. TGGGCTTAGCGATAAGCCAAAGCGGTATTTTCGTAT 345834 30 100.0 38 ATTTTCGTAT .............................. TGAGGATGAGTCCACCGGCTATGATTATCTTAGTCCGG 345902 30 100.0 38 CTTAGTCCGG .............................. AAAACGCAGCTGTGCCCTTGTTGAGGTACTCTGTGAAC 345970 30 100.0 37 CTCTGTGAAC .............................. TCCGCCGGGGGGTGGGCCTCTTTGCGGGTTCTCCCCT 346037 30 100.0 37 GTTCTCCCCT .............................. GGTCGGGCAGGCTGGTGAGGGCCAGGTTCTATTATGC 346104 30 100.0 37 TCTATTATGC .............................. TATGCTCCTCTATACTTTCCTTTCCATGCTCATGCTT 346171 30 100.0 36 GCTCATGCTT .............................. GCCCGATACGGGCTACTGGAGGATTCTGCTTTAATT 346237 30 100.0 35 TGCTTTAATT .............................. TCATCACGAAGAGGGAGAGGGTTATCACCCTCGAA 346302 30 100.0 37 CACCCTCGAA .............................. CGTATTCGTCGTCCCTGTGCGGTGGCGTCTTAAAGTG 346369 30 100.0 36 TCTTAAAGTG .............................. GTGAGCTCGTACTCTGCAAGATCGTTCAGTTCAATC 346435 30 100.0 38 CAGTTCAATC .............................. TCGGCTGGGTTGGCGGGTTTATACGCGCGTGGTCAAAA 346503 30 96.7 GTGGTCAAAA .............................C TTGGCAACCATGTAAGCCACAATCATTCCAAACAGTATG ========== ====== ====== ====== ========== ============================== 12 30 36 GTTGCAATAAGACTCTAGGAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.60,-1.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [478,191] Score: 0.18/0.18 # # Final direction: F [5.09,0.37 Confidence: HIGH] >NC_015865 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 701929 30 100.0 36 AAGCCGCCCT .............................. TTACGACCACCTCCGTGTGGGTTTTCAGTACTCTTT 701995 30 100.0 37 AGTACTCTTT .............................. CGCTTTGTTAGCTTCCGCTGTAACAATCGCGGTTGTT 702062 30 100.0 39 CGCGGTTGTT .............................. GATGACCTTAAACGTGGTCCCATCCTGCCGTATCTCCAT 702131 30 100.0 37 GTATCTCCAT .............................. CAGAGGGACCACTCCCCCCTGTTTCATCTCTGCGTAT 702198 30 100.0 38 CTCTGCGTAT .............................. AGGACGTGGAAAAAGTCGTCAGGGACTTTTTCGGGTGG 702266 30 100.0 38 TTTCGGGTGG .............................. ACTTCGCGAAGTACCACCCCAGGCTGTACAAGCGGCTG 702334 30 100.0 37 CAAGCGGCTG .............................. TAATCTCCAGTGGAAAAATAAAACCCCTTACTCACCC 702401 30 100.0 37 TTACTCACCC .............................. CAGTTTTCTCGTTGAGAGGCCAGAGCACGTCGAGAAG 702468 30 100.0 37 CGTCGAGAAG .............................. TAACCTGAACTTCCTGAAGATATAAGTCATTTCCCCA 702535 30 100.0 38 CATTTCCCCA .............................. TTGAAGTAGTCGTCCCATATCTCGTTAGCCAGGCGAAC 702603 30 100.0 36 CCAGGCGAAC .............................. TGAATTATTTCCACACTTTAAAAAGAACCGCAAAAA 702669 30 100.0 38 ACCGCAAAAA .............................. CACTAAGGTGAAACTGACCCCCAAGGGGTTCCTTTACC 702737 30 100.0 37 TTCCTTTACC .............................. TTAGCAGATACTGGGTATGACATTCGTGATATTGAGA 702804 30 100.0 37 GATATTGAGA .............................. TTTTTATCCTCTCTACGACCTTTAAAGCCTCCTTCTC 702871 30 100.0 37 CCTCCTTCTC .............................. AACGACGGCCTCACAATTGGGGCGTTCATCACCGGCG 702938 30 100.0 37 ATCACCGGCG .............................. GTTGGTTGATGCTGGGGTTATTTATCGTTGGAGGACC 703005 30 100.0 36 TTGGAGGACC .............................. CACTTGAGAACGGCCACGCCACGGACGAGGACATAG 703071 30 100.0 36 GAGGACATAG .............................. TTCTGACCACCTCCACCGTCCGTGAAGCCGACCTTG 703137 30 100.0 37 GCCGACCTTG .............................. CGAGGAGAACGTCTATTTCAACGAGTATGACGTGGCA 703204 30 100.0 37 TGACGTGGCA .............................. AACATCGTCGAGAAAATCGTCGCGAGCATCGCCCCGG 703271 30 100.0 36 ATCGCCCCGG .............................. CGACTCCCTCGCTGAAGAACTACCAGTTTGATCTTC 703337 30 100.0 37 TTTGATCTTC .............................. TGCATCGATAAGGGTGTGCTCGCCCGTGAGGTTCGTG 703404 30 100.0 37 GAGGTTCGTG .............................. TTGTTTATCACGGGCGGGGCCGTCATTTGGTATCCGG 703471 30 100.0 38 TGGTATCCGG .............................. GTAGACTCTAATGTCGCCAGCGTCGTATTCGTCAATAG 703539 30 100.0 40 TCGTCAATAG .............................. TGAAAATCCACCAATTCTGACCTGCGCCCCACACGGTTAA 703609 30 100.0 ACACGGTTAA .............................. TAGCCGCGGC ========== ====== ====== ====== ========== ============================== 26 30 37 GTTGCAATAAGACTCTAGGAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.60,-1.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [65.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [522,84] Score: 0.18/0.18 # # Final direction: F [4.95,0.37 Confidence: HIGH] >NC_015873 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 1493230 35 100.0 39 AAGGGGTGCG ................................... TATAATGAAGGTTTGATCATGACGACAGCTTGTATTGCT 1493304 35 100.0 39 TTGTATTGCT ................................... ATCATCTTTAAAACATATAACTTTTTCATGATAAACTCC 1493378 35 100.0 38 GATAAACTCC ................................... TTAGGCGGAGAGCCATTGTGTAATGACAATGTCTCTAT 1493451 35 100.0 ATGTCTCTAT ................................... CATGGTACGCGGTTAGCACTCAACAAGCGCCACTTGCTG ========== ====== ====== ====== ========== =================================== 4 35 38 GATAAGAACCATAATCCCCGTAAGGGGACGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:51.43%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-9.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [51.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [288,95] Score: 0.18/0.18 # # Final direction: F [0.45,0.37 Confidence: LOW] >NC_015873 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 1503261 35 100.0 38 AAGGGGTGCG ................................... TTGTGACATAATCACGTTGACGTTCTACTAACATGTCT 1503334 35 100.0 40 TAACATGTCT ................................... TCACCGGCGATTCTAACGGCGTCTTCCGGGCTTTGCGCTT 1503409 35 100.0 36 CTTTGCGCTT ................................... AGGCCCCTTCTTTATCTAGTTTGCTTTTTGCATTTT 1503480 35 100.0 36 TTTGCATTTT ................................... ATGAGACAAGCCAACTAAGAAAGAGAGGTAATTTAC 1503551 35 100.0 38 GGTAATTTAC ................................... ATACTTGCATAGGAAACATTAATTCCATAGCGACAATA 1503624 35 100.0 39 AGCGACAATA ................................... GACAAAATCGACGCCTACGAAGCGTTAGCCATACAGCCA 1503698 35 100.0 41 CATACAGCCA ................................... TGAAAATTACTCTTAGTGCTATGATGCGGCGTTCCCTCACT 1503774 35 100.0 37 TTCCCTCACT ................................... TGTCACCGCTGTAGTAAGTTACAAGGTGGTCGATAAT 1503846 35 100.0 40 GGTCGATAAT ................................... CCTCCCTTGATAATGACATAGTGCCTGTTAGGGAAAGCCT 1503921 35 100.0 39 GGGAAAGCCT ................................... TTCTCTGTAGCTACTTCTTTTTGTTGACTACATGTTACC 1503995 35 100.0 39 ACATGTTACC ................................... TAAAACTAAAAGCACATAACTTGCAAACGCGACGCCTAA 1504069 35 100.0 40 CGACGCCTAA ................................... TTCCTCAGCATAAAACGCTGCTAATTCATCGGCGATTTGA 1504144 35 100.0 39 GGCGATTTGA ................................... GTCGCAAGAACATAAGCAACCGCAACAATCATAATAGAA 1504218 35 100.0 38 CATAATAGAA ................................... AGCTTGAGAAGCCCCATAGCTTCACATTCATGAAATTC 1504291 35 100.0 41 CATGAAATTC ................................... ACGTTCTACGCGTTCTTTCAAAACGGGGAAGTTATCAATTT 1504367 35 100.0 36 TTATCAATTT ................................... TTCAATATCGTCACGGTATTCTGGCTTGCTCTGTTT 1504438 35 100.0 39 TGCTCTGTTT ................................... TAGCTTAATAGCTTTGTGTTCGTAAATCTTCATTGTCTT 1504512 35 100.0 37 TCATTGTCTT ................................... AACAACCATACCCGACCGTTTGGAGACGCTTCTAACC 1504584 35 100.0 39 GCTTCTAACC ................................... TACGTTTCTGCTAGGTGGTTCATAATACCTTGACCTACA 1504658 35 100.0 37 TTGACCTACA ................................... ATTTTGGTATCCCTAAGGACTCTTGCATCTTTTTTGC 1504730 35 100.0 37 TCTTTTTTGC ................................... ATCTCACGAAGTCTATCCATAATAGCAGATTTATTAC 1504802 35 100.0 38 GATTTATTAC ................................... TTTCTTCTACTTTGTTTTGGTCAACTTCATTGACCGTC 1504875 35 100.0 38 ATTGACCGTC ................................... ATAATACGCGTTCGTTTGAACCTTTTTTTCTTCTTTTA 1504948 35 100.0 36 TCTTCTTTTA ................................... CTAATCATCCATTTCGTCTATGATGTAGGCTGTTTT 1505019 35 100.0 38 AGGCTGTTTT ................................... TACCTGCCTAAAATCTATATTCAGTTGTCAAAGAACAT 1505092 35 100.0 38 CAAAGAACAT ................................... TTAGAGGTTCAAGGATTCAAACGGGAAGATGATGAATT 1505165 35 100.0 37 ATGATGAATT ................................... TTTCGAGACTTTCTGCTTCATCGGAAAGTTCTTGCCA 1505237 35 100.0 37 GTTCTTGCCA ................................... CAACCTGCCTACTGATGAGACAAGCCGCAACGAAAAG 1505309 35 100.0 CAACGAAAAG ................................... ATCAGACCAG ========== ====== ====== ====== ========== =================================== 29 35 38 GATAAGAACCATAATCCCCGTAAGGGGACGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:51.43%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-9.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [411,1236] Score: 0.18/0.18 # # Final direction: R [0,0.55 Confidence: HIGH] >NC_015873 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 1505379 35 100.0 43 CATTCAAATT ................................... TTCATGCCTGCTTACCCATGTATGAACACCATGGGAGTAAGTT 1505457 35 100.0 41 GGAGTAAGTT ................................... GTGTCAAGATTGACTTTACGTAAAGTCTGCTGTTCTACAAT 1505533 35 100.0 38 GTTCTACAAT ................................... TTCTTGTTCAAGCTTTAACTGTTCTTGCATCGTTCCCT 1505606 35 100.0 39 ATCGTTCCCT ................................... ATCTGCTGGCTTGTCGTGGTCAATCAAGTTGACAGAGGA 1505680 35 100.0 TGACAGAGGA ................................... CTGGCGGTGTAGAGCTTACGGGTCTGTGAAGACCTTGCG ========== ====== ====== ====== ========== =================================== 5 35 40 GATAAGAACCATAATCCCCGTAAGGGGACGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:51.43%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-9.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [55.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2529,865] Score: 0.18/0.18 # # Final direction: F [0.45,0.37 Confidence: LOW] >NC_015873 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1942447 28 100.0 32 ACATGGGACA ............................ TCGGGTTCGTTTGCTTCTCCCTAAGCTGAGAA 1942507 28 100.0 32 AAGCTGAGAA ............................ GGTTACGGTATGAAGTCCATGCTCATCATGCA 1942567 28 100.0 32 TCATCATGCA ............................ AATGGCAAACGAAAGCCAAGCTTTGAAGTTCT 1942627 28 100.0 32 TTGAAGTTCT ............................ CGTCGTGGCCATCTCACGCTTAATTGCGAATT 1942687 28 100.0 32 ATTGCGAATT ............................ AATGTTTGGGTGCAGCCATCCGTTTCCCTTTT 1942747 28 100.0 32 TTTCCCTTTT ............................ ATGTTAGACCCCGGGCTGACTCTCATCTCACA 1942807 28 100.0 32 TCATCTCACA ............................ TGGTCCAGCAATTCTTTTCGCCGTCCTTTCGT 1942867 28 100.0 32 GTCCTTTCGT ............................ ATTTTTGCTGTATTCATTCCTATGACGATAGA 1942927 28 100.0 32 TGACGATAGA ............................ TACGTTCAGCCGGCAGAAAATCAACCGCTTAT 1942987 28 100.0 32 AACCGCTTAT ............................ TTCATGCGCCATCTGGACATTGTGGCGGAACT 1943047 28 100.0 32 TGGCGGAACT ............................ AGCCACTGTATGCCGGCAGTCATGAGTTGTAT 1943107 28 100.0 32 TGAGTTGTAT ............................ CGTTGACGGTCGTTGCCACGGGGTCGGCCTGC 1943167 28 100.0 32 GTCGGCCTGC ............................ TTGGACCCCTGCCGACGGTAACAGCCGCCATA 1943227 28 100.0 32 AGCCGCCATA ............................ GCTGTAGTCATAGTGATAAGCACCGACTTTAA 1943287 28 100.0 32 CCGACTTTAA ............................ AAGTCAGCAACATATACCAGTACCCCTTAGCA 1943347 28 100.0 32 CCCCTTAGCA ............................ GGCCTAGAAGCTCCTAATTGTGGCATTTATCT 1943407 28 100.0 32 GCATTTATCT ............................ CTTTGAAGTGCTTCCACTTTTCTCCTGGTTCT 1943467 28 100.0 32 TCCTGGTTCT ............................ GATCCTTACTGGACTACTTTATCGGTCTTTGT 1943527 28 100.0 32 CGGTCTTTGT ............................ GCCTTTCACGGCTCGAGAAATCAACCGGCTTT 1943587 28 100.0 32 AACCGGCTTT ............................ GCTACTATCGAGAACCCGCGGACCTTTGCACC 1943647 28 100.0 32 CCTTTGCACC ............................ TGAACATGATTTCCAGTCGGAAGTACTTGAAA 1943707 28 100.0 33 GTACTTGAAA ............................ GCTATGCAGTGATGCGACATCAACAACGTATTT 1943768 28 100.0 32 CAACGTATTT ............................ GTTCAGAATATACCGCAACGGAATCTTGGATT 1943828 28 100.0 32 ATCTTGGATT ............................ GTTGCCCATTTGCGGAATAATCGGCAATAACA 1943888 28 100.0 GGCAATAACA ............................ TGTAGGACAA ========== ====== ====== ====== ========== ============================ 25 28 32 TTTCTAAACTGCCTGTGCGGCAGATAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [206,152] Score: 0/0.18 # # Final direction: R [0,0.37 Confidence: MEDIUM] >NC_015873 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1758457 32 100.0 33 TTTGAAGACT ................................ CCGTTCCTTACAGGCTATGCCGCCCTCTGCTAC 1758522 32 100.0 35 CCTCTGCTAC ................................ AAAGATACCCAGTATCCCCTGGCGGACATCAACGC 1758589 32 100.0 36 ACATCAACGC ................................ CGGAAAGCGATATCTTTGAAGACGTCCCGTCGGCCA 1758657 32 100.0 36 CCGTCGGCCA ................................ AAAGTTGATGCCGTAGCTGATGGCGCCCAGGCCCAT 1758725 32 100.0 35 CCAGGCCCAT ................................ ACTGGATATATCCTTGAAAGGCCAGCTGGTCCTGG 1758792 32 100.0 35 CTGGTCCTGG ................................ TCGTCAGCCGCGGCTTGTCTGAGAGCCGGGAAAAG 1758859 32 100.0 36 CCGGGAAAAG ................................ CAGGAAGATGCCCTGCGGTTGTTCCGGGCCTGCCGC 1758927 32 100.0 36 GGCCTGCCGC ................................ CCGATATGGTGAAGCGGGCCAAGGAGTTGAATATGC 1758995 32 100.0 36 TTGAATATGC ................................ GATGAGGTCCATCTGGTCGACGTTCATGCCGGTCTT 1759063 32 100.0 34 TGCCGGTCTT ................................ CTCAATGGGCAGGGCATCGACGTCGGCCCGCAGG 1759129 32 100.0 33 GGCCCGCAGG ................................ AAGCACGTCAGCCCGGCTGGGGCCGCCGTCGCC 1759194 32 100.0 35 CGCCGTCGCC ................................ TACAGCGGATATGAGTACGCGGCAGTTGGCGACCC 1759261 32 100.0 36 TTGGCGACCC ................................ ATGCTCTCTGCTGCTTCGACGATGTAATCAAGGGCT 1759329 32 100.0 36 ATCAAGGGCT ................................ AAGTTTTGCTAACCACTGCTCATAGACACGAATCTT 1759397 32 100.0 34 CACGAATCTT ................................ CGGTTCGGGCTGTTTAGTGGTTGCGGTGGCCGGG 1759463 32 100.0 35 GGTGGCCGGG ................................ GCATTGACATCTGTAAAAGGGAAAAACTGGCTTAC 1759530 32 100.0 35 ACTGGCTTAC ................................ TTCACGGCGCCTGTGACGCCATGCCATGCCTTAGA 1759597 32 100.0 36 ATGCCTTAGA ................................ AATATCAAACAGAACACGGCTGCGGCCTGGCTGGAA 1759665 32 100.0 35 CTGGCTGGAA ................................ ATAATTATCATCTACAAGGCACTGCTTCTGGGTAT 1759732 32 100.0 34 TTCTGGGTAT ................................ TGAAACCATGACGGATTTCCTCACAGATGCATAC 1759798 32 100.0 35 AGATGCATAC ................................ TGGTTGGCTGTGATGCTTGAAGAAAGCGGCACGTC 1759865 32 100.0 34 GCGGCACGTC ................................ AGTTGAAGTACGACTTTATCCGAGTCTTGATGAA 1759931 32 100.0 35 TCTTGATGAA ................................ CCGTGTGCGTCCGCCGGATGAGATTTCCGCGCCGT 1759998 32 100.0 35 TCCGCGCCGT ................................ GTTGCTGATAAAAGCTAGTTCCACTAACACAGCAG 1760065 32 100.0 36 AACACAGCAG ................................ ATCGGGCCAGGGCAAGAAGAGCTGTCTTTTAAACTG 1760133 32 100.0 35 TTTTAAACTG ................................ ATGAGGTAGACCCTTTTCATACGACCGTAAGCATC 1760200 32 100.0 35 CGTAAGCATC ................................ GAGGACCGCGGACGACGTTTCACGCGAAATCCGAT 1760267 32 100.0 36 GAAATCCGAT ................................ GCAAGCCGGGCAGATCTGTGTTTCCAGCCATTTTAC 1760335 32 100.0 34 GCCATTTTAC ................................ GGAACTCATCCAGGAAGACGCCGGTATCGTCCCG 1760401 32 100.0 36 TATCGTCCCG ................................ TGGGCAGTACTGATTGGCGTCCTGGTATCGGCCGCA 1760469 32 100.0 35 ATCGGCCGCA ................................ CTTGCGGGTCACAGTCAATCATGAGTACTTGCGGT 1760536 32 100.0 36 TACTTGCGGT ................................ ACGCTGGAGGATTTAGACGGTCGGACACCCGAACAG 1760604 32 96.9 36 ACCCGAACAG ........T....................... GTCGGCATGGCCGCAGATGCCCTCGACGCCATCTGC 1760672 32 100.0 34 CGCCATCTGC ................................ TACTGGCGTACTTTGAATAAGCGACAAATCACAT 1760738 32 100.0 35 CAAATCACAT ................................ GTTGCTGATAAAAGCTAGTTCCACTAACACAGCAG 1760805 32 100.0 36 AACACAGCAG ................................ TCCGATGCCGTGGCTAAGTACCTCGACCGGATTGGC 1760873 32 100.0 36 CCGGATTGGC ................................ GCTGTCTACCATCTCCCATAAGTCAGCACCATTGAC 1760941 32 100.0 35 CACCATTGAC ................................ TTGCTGGTTGTCGCCGAAGCTTTTATCCGGCTACT 1761008 32 96.9 TCCGGCTACT ..................C............. CACATGGAGG ========== ====== ====== ====== ========== ================================ 39 32 35 GTCGCACCCTTCATGGGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [6,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [61.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [923,199] Score: 0.18/0.18 # # Final direction: F [5.73,0.37 Confidence: HIGH] >NC_015873 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1947859 28 100.0 32 GCATGGTATA ............................ GATTAACAGACAAACCAACCGATACAGTTATG 1947919 28 100.0 32 TACAGTTATG ............................ TCCGTATCGCTGTCGGCGGCGGCTCGAATAAT 1947979 28 100.0 32 CTCGAATAAT ............................ ATGTCGATGTACCGGGCTGGGATTTTGCCTAT 1948039 28 100.0 32 TTTTGCCTAT ............................ AGGCGTACACCGCGAGGCTTCGCACCCAATAA 1948099 28 100.0 32 CACCCAATAA ............................ GGCGCCGCATCCACTATGTGGTGACACCGGCT 1948159 28 100.0 33 GACACCGGCT ............................ ATGTTTTCTCTTAAGTTTTCCTTTGTACTACAT 1948220 28 100.0 32 TGTACTACAT ............................ GTTCGTCTGCACCGCAAGGGGTGCCATCAGAA 1948280 28 100.0 32 GCCATCAGAA ............................ AAGAATGTCCGAAAGAATGTCGCCGAAAAGTC 1948340 28 100.0 32 CCGAAAAGTC ............................ GATACGTGCTTTGCTTAGGCGGTGAGCGTAAT 1948400 28 100.0 32 TGAGCGTAAT ............................ GATGAAAGAGGACTGATCCGCTGCATCAAAGA 1948460 28 100.0 32 GCATCAAAGA ............................ GCTATTTGCCGTTGTGGGCGCGTTTTGCGGCT 1948520 28 100.0 32 TTTTGCGGCT ............................ CCATGTTGTATGGCCATTCGGGACATGATGAT 1948580 28 100.0 ACATGATGAT ............................ AGTATTATAT ========== ====== ====== ====== ========== ============================ 13 28 32 TTTCTAAACTGCCTACTCGGCAGATACC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [53.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [159,468] Score: 0.18/0.18 # # Final direction: R [0,0.82 Confidence: HIGH] >NC_015873 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 2190080 32 100.0 35 GATGCATTTT ................................ AGAAGGCCGGCCAGCAGCTCTTAGACAGCTTCATT 2190147 32 100.0 37 CAGCTTCATT ................................ TTTGACTTATGAGCTGACAATCCAAAATGGGGGCGAT 2190216 32 100.0 36 TGGGGGCGAT ................................ GCATAATTAGTCCACCTTCTTTTCATCTTGATACAA 2190284 32 100.0 36 CTTGATACAA ................................ CTGACGGCGATACAATCAGCCGGATAACCTGCTGCG 2190352 32 100.0 38 ACCTGCTGCG ................................ GCTCCACAATCTCAGACGAACGGTTCCGCATCCTACTT 2190422 32 100.0 37 CATCCTACTT ................................ GCATAAGAGTAAAGAGATAAAAGAGATAATAATAGAA 2190491 32 100.0 37 AATAATAGAA ................................ GCCTCTATTCTAGTTGACTATAATTTTAAGCTACAAA 2190560 32 100.0 37 AAGCTACAAA ................................ GCTTCTTCATCAATGTATTTATCATATCCATGTAAGT 2190629 32 100.0 35 CCATGTAAGT ................................ GCTTAGTGTCGATATTAGTTGCTTTTTGAATCCAC 2190696 32 100.0 37 TTGAATCCAC ................................ GCGCCGGGAAAATCAGCGGATTGACTAGCCACCTCAC 2190765 32 100.0 35 GCCACCTCAC ................................ TGACGAGGAGGGATAGCGACGTATATTGCAAAAAC 2190832 32 100.0 36 TTGCAAAAAC ................................ GTATTTCTTCAAGCAATTAATTTCGAAGTTTGCGTT 2190900 32 100.0 36 AGTTTGCGTT ................................ GACAGCGGAAGATATCCAGTTCTTCGTTGATACAGC 2190968 32 100.0 36 TTGATACAGC ................................ GTTAATGTAATCGGCCAGGGTTTTGCACTTCGTTCT 2191036 32 100.0 36 ACTTCGTTCT ................................ AAGCACGTGCTGGACGATTGGCATTATGCTAAGCTG 2191104 32 100.0 36 TGCTAAGCTG ................................ AGTAAGTTTCGGGTCATTCAGCCTGCGGAGACGTTC 2191172 32 100.0 38 GGAGACGTTC ................................ GCAGTAATCACCAGGACGAATATTGGCTCCGTATGTCC 2191242 32 100.0 36 CCGTATGTCC ................................ GTTTTTCGTCCTCGTCCATGTAGTCAAGCCACGCAA 2191310 32 100.0 36 AGCCACGCAA ................................ CACGACTGCTGGGGGAAACCGTAATAGCTATTCCAC 2191378 32 100.0 34 GCTATTCCAC ................................ TTGCTTACGAGCGTCTTTCAGCGCTTCTTTGTAA 2191444 32 100.0 35 TTCTTTGTAA ................................ TCAAGCGCGTACTTGACCAGCGCTGCGACATTACC 2191511 32 100.0 36 CGACATTACC ................................ TTCCCGTGCCACTGCCGGCGTCTTGTGGTGTCGCAT 2191579 32 100.0 38 GGTGTCGCAT ................................ GCCCAGGCCGGTGCACAGCAGGCTCAGAGCGATGGCCA 2191649 32 100.0 36 GCGATGGCCA ................................ GAGATGTACCTGGCCGGCGTATCCGTGCGCCGTGTC 2191717 32 100.0 36 GCGCCGTGTC ................................ ACAGCTTTTCCAACGTTTTGATCAATTCATCGACAG 2191785 32 100.0 33 TCATCGACAG ................................ TGGACTGACCTCCCTTCGGCGGCTGCCTTCTGG 2191850 32 100.0 36 TGCCTTCTGG ................................ TGATATAGCTTTGGTTATACGTTTTACGCGTATATA 2191918 32 100.0 36 CGCGTATATA ................................ CCCGCCCCTTTTCCGAGACGAAGCAGATGGCATCGG 2191986 32 100.0 35 ATGGCATCGG ................................ CCGTAAACAAAATTTGACCGGATTTCTTTTTTACT 2192053 32 100.0 34 CTTTTTTACT ................................ GCAGGAAACAGCCGAAGCCGTCCACAAGGAAAAT 2192119 32 100.0 36 CAAGGAAAAT ................................ GTATCGATAGCGGCCTTGAAGATGACGCCTGTCTTG 2192187 32 100.0 35 GCCTGTCTTG ................................ CACTGACAGCCGTATACGTTTCCAGCGTATCATGC 2192254 32 100.0 36 CGTATCATGC ................................ TTTCGACGATGCTCATCCCCGTATGATTGAAATCGA 2192322 32 100.0 37 TTGAAATCGA ................................ AAGCCGCCCCGACGACGACGCCACCGGGACACATGCA 2192391 32 100.0 36 GACACATGCA ................................ CGGCGCAGATGGCCCCGTCCTTCAGTCTGCAGGCGA 2192459 32 100.0 36 CTGCAGGCGA ................................ GAGGACGACGAGGACGCCGATTGTCGCCATGATGAT 2192527 32 100.0 34 CCATGATGAT ................................ GGACGGTCTTGCCGGCACAGTAGACGACTTCCGG 2192593 32 100.0 36 CGACTTCCGG ................................ GTCCGGCCGGTCCTGCAAGACGCCCAGCTGCTGCTG 2192661 32 100.0 38 GCTGCTGCTG ................................ GCTGCCCATGCGGCCATCGGCACCGTTAACTAATACAC 2192731 32 100.0 35 ACTAATACAC ................................ GATGACCAAAGTATCTCTTTCAGGATGTTCTATAT 2192798 32 100.0 36 TGTTCTATAT ................................ GTCCACCAGGCCTGCAAATCGCGGCGGCCTTGATCA 2192866 32 100.0 37 GCCTTGATCA ................................ GCTCATGCGGTCAGCACCGCGGGCACAGGCATAAGCC 2192935 32 100.0 36 GGCATAAGCC ................................ CCCATTTGTCCCGACGCATAATCTTTCTGGCTCAAA 2193003 32 100.0 35 CTGGCTCAAA ................................ GACGGTTCAACGAGGGCCTTGTCGCAAGCCATGAG 2193070 32 100.0 34 AAGCCATGAG ................................ GTGGTCACCTTACTCCTCTGCGTTGTAATTATAA 2193136 32 100.0 37 GTAATTATAA ................................ GGAAGTAGACCCCTTCGATGCCCGTGATCCAGCCGAT 2193205 32 100.0 35 TCCAGCCGAT ................................ GCCAGGGCGTCGATTTCTTCCTTGCTGAGGAAGGT 2193272 32 100.0 35 TGAGGAAGGT ................................ TCCATATCGTCGTTGGTCAGGAGATGTTCTGCCGG 2193339 32 100.0 35 GTTCTGCCGG ................................ TTGGTCTTCTTGTTGACCGTTTCATCGGTTTCATT 2193406 32 100.0 37 CGGTTTCATT ................................ GCTTGGCCGGTCCGTCCGCCGTCAGCGTGTCCATGCC 2193475 32 100.0 35 TGTCCATGCC ................................ TTGGTCTTCTTGTTGACCGTTTCATCGGTTTCATT 2193542 32 100.0 34 CGGTTTCATT ................................ GTACACTGGACGCATTTTTCCAGGTCCCATTCAG 2193608 32 100.0 36 TCCCATTCAG ................................ GCTCGTTTCATTTAATTTAGAGCCTCCTGATGTATA 2193676 32 100.0 36 CTGATGTATA ................................ CCTATCCATGATAAACTAAGAATCAAGACAACTTTA 2193744 32 100.0 GACAACTTTA ................................ GAGCCTGCAA ========== ====== ====== ====== ========== ================================ 55 32 35 ATTTCAATCCACGCACCCGTGAAGGGTGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.50,-6.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [40.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [275,186] Score: 0/0.18 # # Final direction: R [0.37,5.14 Confidence: HIGH] >NC_015904 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 16783 19 100.0 35 NNNNNNNNNN ................C.A AAGGATATATCTAATTTAGACATTAAGATAGATAC 16837 19 100.0 35 NNNNNNNNNN ................... TTAAAAATAGATAATTTAGACTCTAAGATTGATAA 16891 19 100.0 47 NNNNNNNNNN ................... GCTAAAATCGAAAATGTTAAAACCGAACTAAATACAAAGATTGAAAC 16957 19 100.0 1 NNNNNNNNNN ................... NNNNNNNNNN ========== ====== ====== ====== ========== =================== 4 19 39 TGTAGAAAAGAATTTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:84.21%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [80.0-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [339,236] Score: 0/0.18 # # Final direction: R [0,0.41 Confidence: MEDIUM] >NC_015913 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 114769 32 100.0 35 AAATTTAACG ................................ GAGGATAAAGGAGTTGGCAATTTACATAGTGCATC 114836 32 100.0 33 ATAGTGCATC ................................ TACGTAGTTCTATAACTTTACCAATTATGTGTA 114901 32 100.0 35 ATTATGTGTA ................................ ATATCTAATATTTTAGCTAACTCTAACTGAGTCAG 114968 32 90.6 ACTGAGTCAG .............T................GG TGCCAGAC ========== ====== ====== ====== ========== ================================ 4 32 34 GTCGCACCTCACGCAGGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [7,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.70,-8.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [183,643] Score: 0.18/0.18 # # Final direction: F [5.18,0.55 Confidence: HIGH] >NC_015913 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================= ====== 116771 33 100.0 33 AAATTTAACG ................................. TATTTGTCCAAATTCTAAGTTGTCAAATATTTT 116837 33 100.0 32 CAAATATTTT ................................. AGTAGGCTTGTCCTCCTTACTTTTAAACTCCC 116902 33 93.9 34 TTAAACTCCC ...........TA.................... AAGATTTTTTATTGATGTGTACATAATCACCCCT 116969 33 97.0 AATCACCCCT ................................C TTTATAATGGATTTGCTTTATGAGTTATTTAGAT ========== ====== ====== ====== ========== ================================= 4 33 33 GTCGCACCTCACGCAGGTGCGTGGATTGAAATT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [7,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.70,-8.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [397,113] Score: 0.18/0.18 # # Final direction: F [5.36,0.74 Confidence: HIGH] >NC_015913 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 745286 32 100.0 34 NNNNNNNNNN ................................ TCAAGTCCAATAAAATTACCATTAGAATCAAAAG 745352 32 100.0 35 NNNNNNNNNN ................................ TGGGGAATTGTATTCAGTTGAATCATCTGCATATT 745419 32 100.0 33 NNNNNNNNNN ................................ TTTCAATCAATAAATTTTCCAGCTTTTCGAAAT 745484 32 100.0 35 NNNNNNNNNN ................................ CATCATATATTTACTAGTTTTTCCAACTCTTAAAC 745551 32 100.0 35 NNNNNNNNNN ................................ AAACTCATATGTATTATCATTAAACGCTCTTATAC 745618 32 100.0 35 NNNNNNNNNN ................................ TAAGTATATTAGACAACCATTTAATTATACAAAAG 745685 32 100.0 35 NNNNNNNNNN ................................ AAAAATATATGTATCGTCATCAAACATCAACAAGT 745752 32 100.0 34 NNNNNNNNNN ................................ TTTAGTTTGGATATATGATTTAATAGCTCCTATT 745818 32 100.0 34 NNNNNNNNNN ................................ TTCATCTATACAAGATAAAATTTTATTTTCTATT 745884 32 100.0 36 NNNNNNNNNN ................................ ATTAAGAGGTGTCGATGCTTGAGTTAAATAAGATAT 745952 32 100.0 35 NNNNNNNNNN ................................ TATGGTGGCTTGATAGGCTCCAACACAAGTAAAAA 746019 32 100.0 34 NNNNNNNNNN ................................ AAAGTGTTTTGTAACTATGATATAGATGTTAAAA 746085 32 100.0 35 NNNNNNNNNN ................................ GTATAAATCTGCCCTAATTAAAAATCTTATAGTTG 746152 32 100.0 1 NNNNNNNNNN .............................G.A NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 14 32 34 GTCGCACCTCACGCAGGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [7,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.70,-8.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [172,702] Score: 0.18/0.18 # # Final direction: F [4.91,0.55 Confidence: HIGH] >NC_015931 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 388807 25 100.0 43 CAAGCGTGCA ......................... CACGCCAGAACTGCTGATCAAGCTGAAGGTGAAGGGAATCCAC 388875 25 100.0 47 GGGAATCCAC ......................... AACGACGTTGACTGGGGCGACGCTAGGGTCATAGTGGTGGACTCGCC 388947 25 100.0 45 TGGACTCGCC ......................... TGCTAGGCTTATGCCCATCGCCCTTTCTGCCTCGTGTATCTTGGT 389017 25 100.0 44 GTATCTTGGT ......................... TTCTTGCCATGGGCGAGCGAGTAGAGGTACCTAGCCGCCAGGAG 389086 25 100.0 44 CCGCCAGGAG ......................... CATTGACGTATCTAGGTTCCCACCCACAGACGTGCCCCTCTGAT 389155 25 100.0 39 CCCCTCTGAT ......................... AACCTAACACGGCTACTCACAAGCCACCACGGGCCATCG 389219 25 100.0 43 CGGGCCATCG ......................... CACGTCCTCGGGCTTCTGGAGCCGCTTCCTGAGCTTGAATACT 389287 25 100.0 45 CTTGAATACT ......................... GACCTGGGTTTGGGCGGCCATCCCACACACACCCCGCCGGGTCCG 389357 25 100.0 42 GCCGGGTCCG ......................... GCACATGTTCCTGCAAACCCTTACCCCGCTAGAGTCCACCAA 389424 25 100.0 43 AGTCCACCAA ......................... CACAAGATAGCCGGTATTGACATTGATGAAGAGGAGCTGACGG 389492 25 100.0 41 GAGCTGACGG ......................... TAACAGCAACCGGTCAGGTCAAGTTCGTGGTGAAGCAGTAC 389558 25 100.0 43 GAAGCAGTAC ......................... CCGGCGGCAGACGCGGTCGTACCTGCACTTGTCTAGCTCTCTG 389626 25 100.0 52 TAGCTCTCTG ......................... CCTGGCTTGGATACGTCTGGTGCAGCCGTATACGCGACGCTTCCAGTGACAC 389703 25 100.0 41 CCAGTGACAC ......................... TTTCTCACCACGCTGGCTTACCCCGCTCTCCATGCTTTCGT 389769 25 100.0 47 ATGCTTTCGT ......................... TTGAACTTCGTCGGGATGAAGTGCACGTTGATGTACGATGACGGCTT 389841 25 100.0 46 ATGACGGCTT ......................... CAGCCTCATGACTAGCTTGTGCACGGCCTTGACGAGCCCGCCTAGC 389912 25 100.0 42 CCCGCCTAGC ......................... GGCCACCACCGTCAGCCCGAAGAGCGTCTCTATAGCGTCCAC 389979 25 100.0 43 TAGCGTCCAC ......................... CACCTTTGCCGGCGGCCACTCCTCGACGATCCAGAACGGCTCT 390047 25 100.0 43 GAACGGCTCT ......................... GCGCTATACATCAGCTTGACGGCCACCGTTGTCTTGCCCGTGC 390115 25 100.0 45 TTGCCCGTGC ......................... GTTGGATTAGCTCGGTTGCTCCAGGCATACCACCCGACCCCCGAT 390185 25 100.0 45 GACCCCCGAT ......................... GACATCCTCTGGCTTCGCTAGGCGTCGCTTCAGCTTGAAGACAAT 390255 25 100.0 45 TGAAGACAAT ......................... CAGTAGTTCAGCTGGGCCCAGAGGACGCGGTGGTTGACCCCCACG 390325 25 100.0 44 GACCCCCACG ......................... ACACTAATAACTCGCTCAACGTCATCTGGGGTCAGGAATTTCGC 390394 25 100.0 45 GGAATTTCGC ......................... CGCCGCGTCTAGCTCCGCCTGCACACGGGCCGCGATGGTGTCGAA 390464 25 100.0 41 TGGTGTCGAA ......................... TCGATATCCCTGAGGGCGTGCTCTACGAGCATCCTTCCGTA 390530 25 100.0 42 TCCTTCCGTA ......................... TGGTGGCAGCAGCTCATACACCTGGTAGCCTGCGCCGCGCAT 390597 25 100.0 44 CGCCGCGCAT ......................... TCGGATGTTGAGGTGGCCGTGATACTCCGTCACCTCCGCAACAA 390666 25 100.0 42 TCCGCAACAA ......................... GGGGGTGTATACGTATCGGGTTAGAGGCCCTCGGGGGCGCTA 390733 25 100.0 57 GGGGGCGCTA ......................... TGACCACCCATCGGTAACACGCACTATTGCTTGTCATACAACGCTCCTCGTTGCTAG 390815 25 100.0 45 TCGTTGCTAG ......................... GGCATCAAGTGCCAGGATTAGTGGCTCTTCGCCCGGAATGTCAAT 390885 25 100.0 45 GAATGTCAAT ......................... CGCCTTGAACGTGACGATCCGCATAGATCCGCACCGGTGTTACCC 390955 25 100.0 43 GGTGTTACCC ......................... CCATCCATGCAGACGGTGGTGGAATGCCGGACATAGACGATGT 391023 25 100.0 42 TAGACGATGT ......................... GTTCTCGCCGCCGTAGTACATGCGTATCGTCACCGTCCCGTT 391090 25 100.0 37 CCGTCCCGTT ......................... CGAGACCCTCAGCGACGCGCTCTCTAACGCTGTTTAC 391152 25 100.0 50 CGCTGTTTAC ......................... TATGCCCCTGTGGACGATGTCCCCGAGGAAGAGCCAGGGCTCCTGCATGC 391227 25 100.0 TCCTGCATGC ......................... TCAATAACAT ========== ====== ====== ====== ========== ========================= 36 25 44 GAAACAACCAAGAATGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [50.0-46.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [86,397] Score: 0.18/0.18 # # Final direction: F [4.5,0.18 Confidence: HIGH] >NC_015931 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 425698 25 100.0 46 NNNNNNNNNN TC......C.G.....G........ TTCAAAGCTCCATATTTTGTCCTCCAAGGCGAGATACTACCGCTTT 425769 25 100.0 46 NNNNNNNNNN ..............C.G.....C.. TCCACCCTTAGACCTACGCCAAATGCCTTACTTTCATACTAACCAA 425840 25 100.0 47 NNNNNNNNNN ......................... GTCCTCGCGGCGCTAGTGCTACTTGTGCCTGCTCTGGCGGCTAGCAT 425912 25 100.0 43 NNNNNNNNNN ......................... CGGCAAATGCAGCACGTTGTAGTGCCATACCTATCTGCATGGC 425980 25 100.0 42 NNNNNNNNNN ......................... CTACAGCCAGTGGCGACGATGGACGATGTGAAGACGCTCCAC 426047 25 100.0 44 NNNNNNNNNN ......................... TCGTATACCTGGCGGAGTGGCTCCGTGCTCATTATCGTGTCTAG 426116 25 100.0 45 NNNNNNNNNN ......................... CCGCTACGCCGCACTCGTTGACCTTCCGCCCCATCCCAAGAGTAT 426186 25 100.0 44 NNNNNNNNNN ......................... CCGTGCGGGCTGGGGAGGGGCGGGCGGAGACACCGAGGCACAGC 426255 25 100.0 38 NNNNNNNNNN ......................... GAGCCGCAGCAGAGACTCCTCCTGGCCCGGCACCGGGT 426318 25 100.0 39 NNNNNNNNNN ......................... CACTACGACGACTACCAGCCAACAAGCTTCGACAACGAC 426382 25 100.0 42 NNNNNNNNNN ......................... CTCACAGCACGTCACCCCACTACCATGACAACCACCCTGCCA 426449 25 100.0 41 NNNNNNNNNN ......................... ACATAGTGCCGCTTGAGCGCATTGACGACCCGGAGCGGTTC 426515 25 100.0 44 NNNNNNNNNN ......................... CCGCCCTGCTGTACGCTATCAAACAAAATCCGAACATACTGCGC 426584 25 100.0 42 NNNNNNNNNN ......................... GTGCGCATGCTCGTGCTAGTCACCCGCGGATTGCACTACTTC 426651 25 100.0 44 NNNNNNNNNN ......................... TTTGGTATCGGTATTCTGCTTGGTGCAATTGCTAACGCCACCAA 426720 25 100.0 45 NNNNNNNNNN ......................... CTTATGCCCTCTTTTGCCCACTTGCGGAATAGCTCTATCCACTGA 426790 25 100.0 45 NNNNNNNNNN ......................... TACGAGGCGCCCGACTGGCACCCGGAGGGAGTCACGGTAACCGTG 426860 25 100.0 40 NNNNNNNNNN ......................... TGGGCAGCCGCCAAAGCCCGTCTATGCCAGCGGCGGCTAC 426925 25 100.0 52 NNNNNNNNNN ......................... TAGGCCTGCTAACACCCTGGCTCATACTAGGAGCAATGGCGACGGGCTACGT 427002 25 100.0 39 NNNNNNNNNN ......................... CTGGCCCTGCAGGTCGATCACTGGGGTTATCGTGGTGTT 427066 25 100.0 41 NNNNNNNNNN ......................... AAAAGATTGCTAAATGGCTCGAAGAGGACTTGTCTGACGAA 427132 25 100.0 45 NNNNNNNNNN ......................... GGGTTCATAGCATGGGCGGTTGGTATAGACGCCGAGATGGCCAGG 427202 25 100.0 37 NNNNNNNNNN ......................... TAAGGGCGAGGAGCGCGAGGTTGACATGTGGGTCGTG 427264 25 100.0 45 NNNNNNNNNN ......................... CTCGTCGCTACCCTCGATGAGGTACGGTGGTAGCATGAGCGCTGT 427334 25 100.0 39 NNNNNNNNNN ......................... GCTCAGGTCCTCCGGTGCGTTCTCCAGCGCGTAGTTAAC 427398 25 100.0 43 NNNNNNNNNN ......................... GGGCGGACAGTTCTTCCACTACACGGTGTTGTCGTGGCTAACG 427466 25 100.0 44 NNNNNNNNNN ......................... TATGCCTCGCGCCTTGGCCCAAGAACCTATATCGCGTACTCGTG 427535 25 100.0 43 NNNNNNNNNN ......................... CCAGGATGGCCGCCGCGGCGGCAAAGATGTCCGCCTCTACCAA 427603 25 100.0 42 NNNNNNNNNN ......................... TCGGCTCGGCTTCCGTTCCTAGAGCGGCGGTATCGCCTAGAA 427670 25 100.0 42 NNNNNNNNNN ......................... TATGTAACGCCGCGTTTCAGTGGCATGACGATGAGATGGGTG 427737 25 100.0 44 NNNNNNNNNN ......................... ACGAGAGCGGCGGCACGATATGCGAGTGTGAAGCCGACGATGTC 427806 25 100.0 41 NNNNNNNNNN ......................... ACAGGGCCTCTCTACTCGACGCCAGGAAGCTGGTAAGGGTA 427872 25 100.0 41 NNNNNNNNNN ......................... CACGTTCTCCAGCCACTTTAGGAGCCACTCTTTCTTCTCCC 427938 25 100.0 40 NNNNNNNNNN ......................... CCATGCGGCGGCTGCCGCTTCTCCACCAGCCGTCTTCATA 428003 25 100.0 42 NNNNNNNNNN ......................... CTCGACCTTATCGCATGGCATGCAGTGAGCATGAGGAATGTC 428070 25 100.0 42 NNNNNNNNNN ......................... CGCATACCCTCTATACGCGGTGCGGGGATCCGGAAATGGTGG 428137 25 100.0 45 NNNNNNNNNN ......................... CAGGCTTGGGTCGTGTCCACGCCCGAAGTCCGGTATCTTGCCAGG 428207 25 100.0 42 NNNNNNNNNN ......................... ACGTAGCTTAGGGTCGAACATGCCAACCGCTGGCTCTGTGTG 428274 25 100.0 43 NNNNNNNNNN ......................... GAGGCTCTGGCAGATGGCCAAGGGCAGTGCTGGCAAGAAGCGG 428342 25 100.0 46 NNNNNNNNNN ......................... CGTCCTTCGCGGGTTTACGCGTGGGGGTGCGTGGGATGGAGGCCGC 428413 25 100.0 45 NNNNNNNNNN ......................... ACACGCGTTTTTTCAACTTGCGCGACCTCGCACATCACGATCTGC 428483 25 100.0 39 NNNNNNNNNN ......................... TTACGCGGTAGGCCCACGCGGAGGTGGTCGCGGGTGAAG 428547 25 100.0 40 NNNNNNNNNN ......................... TATCGCGACAAACGTGCGCAGTGATGGACGAATATACCTC 428612 25 100.0 46 NNNNNNNNNN ......................... ACAGTGGAGGTGAGCAAGCCATCCGACTGGTCTAGGAACAGGGCTA 428683 25 100.0 47 NNNNNNNNNN ......................... ATGGGCTGTGTCGCGAGAACTGCTACCACGCGTGTATCATGGCATTG 428755 25 100.0 43 NNNNNNNNNN ......................... CCGTGTGTGGCAAAAGTCGAAGGCAGAGGCGGCTACAAACCAA 428823 25 100.0 45 NNNNNNNNNN ......................... CTTGATTCTCAGCGCCACGAACGACGCTCTAGTATCGTCAATGAC 428893 25 100.0 43 NNNNNNNNNN ......................... AGGCTGAACAGCTAGCACGGGGGAGGACACGAGCCATGAACGA 428961 25 100.0 45 NNNNNNNNNN ......................... GTGACGGGGTACCTAGCCACGGTTGTCACCTCCTAGATGTTCATA 429031 25 100.0 43 NNNNNNNNNN ......................... TCGCGGTAATAGTCCCCAGCGTCCGGGTCCACTGGTATCTCGA 429099 25 100.0 44 NNNNNNNNNN ......................... ACTGAGGCCAGGGAGGAGCGGGAGCAGAAGCCCAGCGAGGCTTG 429168 25 100.0 39 NNNNNNNNNN ......................... CGCGCGACGTTATGGTCGTTCCCGCCGCGTCCGCCTCAT 429232 25 100.0 41 NNNNNNNNNN ......................... CTCGCTTCGAGAGGATAGTGATAAGGTGCGAGCCTATGACG 429298 25 100.0 41 NNNNNNNNNN ......................... GTTAAACTAGAAATGAAAGCGCAAGGTTGTGAAAACGGGTG 429364 25 100.0 50 NNNNNNNNNN ......................... CCCAGAAATATCTCGAACCGGAAATATCGAGCCCCGATAGGGTCACATTC 429439 25 100.0 45 NNNNNNNNNN ......................... CTCACCCACCCGACCAGCGACCCATCACTAGCATTGTAGAACTCC 429509 25 100.0 44 NNNNNNNNNN ......................... GTATTTGCACCACCAGCCGCAAGGCAGTATATGCCGCTTTTTCA 429578 25 100.0 40 NNNNNNNNNN ......................... CGCCTGGAGGTCTTCTGCGAGTGCAAGGGGTGTAGAGCCA 429643 25 100.0 44 NNNNNNNNNN ......................... ATGATCTCAAATCGCGTCTCTTTACCGCCGCGATCCTCTCCAGG 429712 25 100.0 43 NNNNNNNNNN ......................... CATCAACGCTGTATCGTTCTTCCGCGATACGCCAAACCACTTG 429780 25 100.0 40 NNNNNNNNNN ......................... GGATGTTACAACCCCAATAGTACCCAGTGTTGCATGTTCT 429845 25 100.0 39 NNNNNNNNNN ......................... CGCGAGTGGTGGTTCGTGAAGGCGCGTCGCATAACCGTG 429909 25 100.0 43 NNNNNNNNNN ......................... CGCAGTTCCTGGCCACTGCCCGCCAGGTGCTAGAGAAGCTCGA 429977 25 100.0 44 NNNNNNNNNN ......................... TTTGGCTTCTCTTCATCCTCTAGACAATCACCGAGAATCAAGTC 430046 25 100.0 45 NNNNNNNNNN ......................... ATACATGTATGGGGTGGAGGTAGGTGATGCGACCAGTCATAGGCC 430116 25 100.0 49 NNNNNNNNNN ......................... GCGCAAATGCTCGATACGTCCGCGGGAATATCCGCCTGTAGGCCTCCAG 430190 25 100.0 41 NNNNNNNNNN ......................... AAGTCCGGAATCTCGCTGGAGATGCCGAGGCGCGGTTTCGA 430256 25 100.0 44 NNNNNNNNNN ......................... ACGGCCGCTGGCATATCCTCGCTCAGTAGCGTAGCTCCGATCAA 430325 25 100.0 43 NNNNNNNNNN ......................... CTGAAGGTTATGCTGGTGGTGTATGATGGTGGAATGCCAGTTA 430393 25 100.0 1 NNNNNNNNNN ......................... NNNNNNNNNN ========== ====== ====== ====== ========== ========================= 70 25 43 CTTTCAATTCATTCTTTGTTGTTTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [38.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [74,601] Score: 0.18/0.18 # # Final direction: R [0,5.36 Confidence: HIGH] >NC_015931 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 437565 24 100.0 44 CAAGAATGCA ........................ GCTTCAGCGCGTAGTAGTGGCGCTCGAGACTCCTTGGCGAGTAG 437633 24 100.0 39 TGGCGAGTAG ........................ GTTCATCACGGTCGGTATGAGTGGGAGCGGCGGGTTTGG 437696 24 100.0 47 GCGGGTTTGG ........................ GTCCAGGTGCTCGATGGCCCATAGTGGCGCCTCTACAAGCGCGAATG 437767 24 100.0 48 AGCGCGAATG ........................ GAAGGATGCGTTCGAGAACTGATATCGCGTTGTCAATTTCCCTCCGGG 437839 24 100.0 44 TCCCTCCGGG ........................ GGAGAGGAAGGCTGCCCCGGACCTCGTCCGCTCTATCGTCGATG 437907 24 100.0 43 ATCGTCGATG ........................ GGCTATCATCGCCTCCAGTTTGGCAATGATTTGGTCAGCCTGT 437974 24 100.0 47 GTCAGCCTGT ........................ GAAGCTTCTTGTACGTCTCAACGTCGGCCTCAACGCGTATTACTTTC 438045 24 100.0 47 TATTACTTTC ........................ GGCGACGTACGCGATGTGTGGCGACTCGTTGAACTGTGTGTTCTGCC 438116 24 100.0 42 GTGTTCTGCC ........................ GTACAAACTCGTAGTTCTCTCCGCCACGGTTTATAACGATGA 438182 24 100.0 45 ATAACGATGA ........................ GTGCCTCGAACCTCGCGGCGGCCCTGTTATGGTTCGTGGCGGTGT 438251 24 100.0 45 GTGGCGGTGT ........................ GAACTATGCTCTGTAGTAGCCTGGGAAGCTCCGCGCTCATCCCGC 438320 24 100.0 47 CTCATCCCGC ........................ GTAGTACACGCAATACGGCATTGCACACCCACCACGCGTACACTCTA 438391 24 100.0 47 GTACACTCTA ........................ GTAGTGTGGCACGACAGTGGCTATGACTTAGTGCCGGGCTATAGCCA 438462 24 100.0 42 GCTATAGCCA ........................ GGTGACACTATACAACATCACGGACGTCGTGAAGAGGAGCGT 438528 24 100.0 45 AGAGGAGCGT ........................ GTTAACCCGGCCGCGCGCCGCGACGATCTCGAGATCGCGCCGGCG 438597 24 100.0 43 CGCGCCGGCG ........................ GGTGATAAAGTACGGCGCGCAATACGGCACCGGGTTCTGGATT 438664 24 100.0 45 GTTCTGGATT ........................ GTGATCTCCTGTGGGTTCGGTTTCTCCACCCTGATCTCGACATCA 438733 24 100.0 42 CTCGACATCA ........................ GGTAGCTGAGACCATAGCGTAGCCGGTAGAGTTGTGCCACGG 438799 24 95.8 TGTGCCACGG .......................G ATGTTTAGGG ========== ====== ====== ====== ========== ======================== 19 24 44 GAAACAACCAAGAATGAATTGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.83%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [61.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [343,74] Score: 0.18/0.18 # # Final direction: F [5.36,0 Confidence: HIGH] >NC_015931 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 461092 25 100.0 45 NNNNNNNNNN ......................... GCAATACTACGTGGTGAAGAGGTGCCGCCAGAGTCAGGCATTGAC 461162 25 100.0 46 NNNNNNNNNN ......................... GAGAGCATGACGTGTGTGTCACAACCGGCAAGAAGGGCGTGTGTAT 461233 25 100.0 51 NNNNNNNNNN ......................... CAGCGCCTGCTCCTAGGCCGTGACCGTGACGAGGAGACGGTCTATGTCACC 461309 25 100.0 43 NNNNNNNNNN ......................... GGGTGTGGTAGCCGAACGATAGCCTGGCTAGTGATAGTGTGTA 461377 25 100.0 43 NNNNNNNNNN ......................... CCAAACTTGCCACCAATGCCTCAGCCAACACCAAAACCGTAAG 461445 25 100.0 40 NNNNNNNNNN ......................... TCCCCGCGATTGTCGATACGCCGGGTGTCGTTACCGTTGG 461510 25 100.0 42 NNNNNNNNNN ......................... CTGTGTCCGCGCCCGGGGACACCCCTCCCTCAGCATGTGCTC 461577 25 100.0 44 NNNNNNNNNN ......................... CCCTTGTAGCGAGCCACGGCCAACACACCAACCCGATGCTAGTT 461646 25 100.0 39 NNNNNNNNNN ......................... ACCGCTCTACGCCACCCCCTACCTGAACGTCACGACCGG 461710 25 100.0 51 NNNNNNNNNN ......................... ACAAAACGCGCGATATATAGACGCGCGCGGCTATAATATAATATAACGCGA 461786 25 100.0 42 NNNNNNNNNN ......................... CTCGATAGCTCTACGAATCGCCTCTGAGCGATTTATTCCACG 461853 25 100.0 47 NNNNNNNNNN ......................... ACGGATACGTCTCGCACAGACGTACCTCTATCGTCACTTTATCTTTT 461925 25 100.0 38 NNNNNNNNNN ......................... GAAACCCTCTTGACGGGAATGTGGCAGGGCAAGTGGAA 461988 25 100.0 44 NNNNNNNNNN ......................... CTACCAACGTGCTGGTGGCCGCAGCCAGCCTAGCCCCGGACATC 462057 25 100.0 43 NNNNNNNNNN ......................... GGCGCTGCTGGAAGCCGTGGTGGAGTCTATACCGGTGCTGGAC 462125 25 100.0 53 NNNNNNNNNN ......................... TACCCGACTGCCAGGGGAGTACACGTTTACGCCACTAGCGAGTCACCATGGGT 462203 25 100.0 41 NNNNNNNNNN ......................... GCTGCTGCAGCCTTTATTGCACAGAACGGCTCGTAGCTTAC 462269 25 100.0 48 NNNNNNNNNN ......................... CTCGAGAGCCTCTATGAGAGCGTTAGAGGCACTAGCAAGCTCACAGTG 462342 25 100.0 44 NNNNNNNNNN ......................... TCCAATTGCCAGGATCCTCGAGAAGGAGTTAGGTGAAGTAGCCA 462411 25 100.0 40 NNNNNNNNNN ......................... CTAGGAGTTGAAGGGTTCGAAGGCTGAGGCTGGGATGATA 462476 25 100.0 45 NNNNNNNNNN ......................... CTCGTAGGCGAGGTGTACCGCTGGCGTGCCCATCGCCATTGCCTC 462546 25 100.0 43 NNNNNNNNNN ......................... GTAGGGGGTTGCGGGTACGCTGCATGGTTGACGAGCCGCTGGG 462614 25 100.0 41 NNNNNNNNNN ......................... CCGAGCCCGAAGGAGCTTGGCGCGCGCGTCTTCAAGGGCGA 462680 25 100.0 42 NNNNNNNNNN ......................... CGATGGCAACGAGGTTGACGTGCACTTCGACCACCTGGCGCA 462747 25 100.0 41 NNNNNNNNNN ......................... GCGTTGGAGAGGCTGCTGGAGGAGCGGAGGGTTGACGCGAG 462813 25 100.0 44 NNNNNNNNNN ......................... GCGTAGACCTTCAGCAGCGCCCCCCTGCTGGCCGCCTTGCCCAG 462882 25 100.0 40 NNNNNNNNNN ......................... CAGTAGCATGCCGCTATACTACGAAGTGTTCGTGAAGTGC 462947 25 100.0 45 NNNNNNNNNN ......................... ACGCAGTGTAACCCGGGAGAGTACGCGTTCAACGTGTCAGGTCAG 463017 25 100.0 40 NNNNNNNNNN ......................... ATCATGGACTTCTTCAACCGCGTGAGCGTCGTTGAGCATA 463082 25 100.0 43 NNNNNNNNNN ......................... CGGGGTACGTGGTCACAACCGCATCACCGTGTGTGCAGCGAAC 463150 25 100.0 44 NNNNNNNNNN ......................... AAACCAGCGCCGTGCCTCGGAAACGGTGATTATGTAGAAATAGC 463219 25 100.0 46 NNNNNNNNNN ......................... CTACGAATAGCATAGGCGGGCACCGTATCTACCTACCCGAGTATGG 463290 25 100.0 46 NNNNNNNNNN ......................... GCAACCCGGCCTAGCTGTAGCCATGCTTGTATGCTTCGCCATATAC 463361 25 100.0 41 NNNNNNNNNN ......................... AATAGCTCCACTACTTGGTCAACGGCGTACCCCATCCACTT 463427 25 100.0 42 NNNNNNNNNN ......................... AGGCGAAGCCCGACGAGGTTGCCGCCGAGATATCTGGTATCC 463494 25 100.0 47 NNNNNNNNNN ......................... TAGGATAGAGACGGTGAAGGGCAACGGGGCGTTCTTCGAGACTAGTG 463566 25 100.0 44 NNNNNNNNNN ......................... TGATTCTCCCACCCGGCTGAGCGGTGATGACGGCAGCCTCCACT 463635 25 100.0 46 NNNNNNNNNN ......................... AGGGCAGTAGGATTAGCGCCAGGAGTGGCGCGAGGGTTATCAAAAA 463706 25 100.0 48 NNNNNNNNNN ......................... TACCGACGAGCAGACGGCTACGCCGCGCACCCAGCGAGAGGCTATCGA 463779 25 100.0 44 NNNNNNNNNN ......................... TCCGCGCGCGAGATCCATCTCTCCCGCCCCCGCGCTTCGGGTAG 463848 25 100.0 38 NNNNNNNNNN ......................... TCGCTCGAGGAGGTGAGGAGGCTGGCCCAGGAGGGTAG 463911 25 100.0 42 NNNNNNNNNN ......................... GTCGCGTAGTATACGCGCCGCGGTGAGCACCCCGAGCTGCTC 463978 25 100.0 40 NNNNNNNNNN ......................... CTGGCCGTGGCCCCTCTCGCAATCGGCCTCAGCTTCCTCC 464043 25 100.0 45 NNNNNNNNNN ......................... GGAGAAGATGGCGGTCTCAGGGCCGCCGCCCGCGAGGCGGTCCCA 464113 25 100.0 52 NNNNNNNNNN ......................... ATAGGGGGTCGTCTGGCAACACGACCTTCGAGATAACGTTCAACGTGACGAG 464190 25 100.0 44 NNNNNNNNNN ......................... CATCGAGGCTCTGGACTACCTCGCCGAGATGATAGACTATAGGG 464259 25 100.0 45 NNNNNNNNNN ......................... GCCAGGCCCGAGGCGGTGAGGTTTGACAACGTGGAGAGGAACGGA 464329 25 100.0 48 NNNNNNNNNN ......................... ACCTTGGCGTCCGGCAGTGGCGGGGCCGACGGCCCCACCAGGCCCCGC 464402 25 100.0 41 NNNNNNNNNN ......................... GGATTGTTCTAGCATCTGCTCCGAACCCAAATCATAATTCG 464468 25 100.0 49 NNNNNNNNNN ......................... CGTGGCATAGTGATAGTGGCAACGCATACTGACATATTCCACGTCGGTC 464542 25 100.0 39 NNNNNNNNNN ......................... TACGGCAGGAGCGCCGAGCAGGTTGAGCTCGCGAGCCTA 464606 25 100.0 41 NNNNNNNNNN ......................... TCTAGCTCTACGCTCACGTTGAGGGGCACGGCTCTCACCCC 464672 25 100.0 41 NNNNNNNNNN ......................... CATGGGCGCGGTTGAGACCTTCGAGGACAGGATAGCCTCGA 464738 25 100.0 39 NNNNNNNNNN ......................... TCTATGGTGGATGGCGAGGACGGCGACATCTGGTACGAG 464802 25 100.0 58 NNNNNNNNNN ......................... CCGTGTCCTGGTCACCAACCAGCTCCTAGCCCCGGGCGTGCGCGTGCAGCTCTTCGTA 464885 25 100.0 48 NNNNNNNNNN ......................... ACGAGGTGAGAGACTTCACAGAGATAGCCCGCATAGTAGCAAAAACGC 464958 25 100.0 41 NNNNNNNNNN ......................... TGGAACCGCCGCCACCGTTGGCCTGACGCTATTCGTGATTG 465024 25 100.0 45 NNNNNNNNNN ......................... TCCGGATCCCCGCACCGCGTATAGAGGGTATGCGCGGGGGTATAA 465094 25 100.0 42 NNNNNNNNNN ......................... ACATGGAGGAGCCAAGGCTCATAACCGCGATACGCGAGAATG 465161 25 100.0 38 NNNNNNNNNN ......................... CAGAAGTCTTACGACGGATACTAGTGGTGCAAATAATG 465224 25 100.0 42 NNNNNNNNNN ......................... ACTACACGACCCTGCAAATTCCCATCGTGTCATAGTGTCATA 465291 25 100.0 40 NNNNNNNNNN ......................... GCGGTCTGGAGCCCGGTGCACGGATCTACATCTACGATGT 465356 25 100.0 40 NNNNNNNNNN ......................... CTGGCCGCCGCACTTGGCGTTGAGGGTGTGGAGGCAAGCG 465421 25 100.0 43 NNNNNNNNNN ......................... ACGAGGCAGTGTGTTAGTGACGATAGGCCGGTGTGTAGCGAGA 465489 25 100.0 41 NNNNNNNNNN ......................... TTAACAGCGTACTTCAGCGCTTCGCGGACGCCAACGCGTAC 465555 25 100.0 46 NNNNNNNNNN ......................... CGCGTTGGTCTTGTAGCTCTCTGCGCCGGCGTCCACGCGGGAGTCG 465626 25 100.0 45 NNNNNNNNNN ......................... CCCGCATGGGTCTACCCCTCTCCCGAGATGCGCAAGGTAGCGACC 465696 25 100.0 39 NNNNNNNNNN ......................... GTAGCTCTCGATCCACCCGCGGAACACAGGGTCGGCATG 465760 25 100.0 42 NNNNNNNNNN ......................... CAGCCTCACTAGAATCTCGTATATCTCGCGGGCTTGTTGTAT 465827 25 100.0 48 NNNNNNNNNN ......................... GCTCGGTGTTCAAGTCGGTGGTCTACGACCGTTGCGGGTGCGTCCAGA 465900 25 100.0 44 NNNNNNNNNN ......................... AGTGATATGCTAGTCGGTGATTTATGGTGATAATAAACGTGCTA 465969 25 100.0 42 NNNNNNNNNN ......................... GTACTGAAAAGTGTTGGTCTACTTGATAAGCTAAGAATGTAT 466036 25 100.0 48 NNNNNNNNNN ......................... AATACAAAACAATCAAGATATTGACGGGCCTGCCTTTAGTAAATGTAA 466109 25 100.0 41 NNNNNNNNNN ......................... TTGTAATGCGGGGTGAGGGCATGAAACTGAGAGAATTAGTA 466175 25 100.0 44 NNNNNNNNNN ......................... GACGTCGTAATGCAGATCATGACGCGGTGGTTGCTAACGCCACT 466244 25 100.0 41 NNNNNNNNNN ......................... TGCGGATAGAGGAGGGGAGGATAACGTTTCCGATCGGGGTG 466310 25 100.0 42 NNNNNNNNNN ......................... AAAACGATCCGTGTCGAGTCCGGCCTCGCGATAATCAAGGTA 466377 25 100.0 54 NNNNNNNNNN ......................... AGCGTCACGTCCCAGCTTCTCCTGCCGTAGGCGGTGTACGCTGGTTGGTCTGGA 466456 25 100.0 44 NNNNNNNNNN ......................... TCGCTAGGAAGGGCCGCGAGTGGGTGGCTGCCGTGAGTTATGGG 466525 25 100.0 1 NNNNNNNNNN ......................... NNNNNNNNNN ========== ====== ====== ====== ========== ========================= 80 25 43 CTTTCAATTCATTCTTGGTTGTTTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [60,337] Score: 0.18/0.18 # # Final direction: R [0,4.95 Confidence: HIGH] >NC_015931 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 473827 25 100.0 44 CAAGCGTGCA ......................... GCGGAGGTAGAACCAGGCGCGTAGGAGGCGCCTGTAAAAACTCT 473896 25 100.0 44 TAAAAACTCT ......................... CATTGACGTATCTAGGTTCCCACCCACAGACGTGCCCCTCTGAT 473965 25 100.0 45 CCCCTCTGAT ......................... GCAGCATGGGCACCAACTCTGGGACTCGCTAAGGTGGAAGTTCTT 474035 25 100.0 41 GGAAGTTCTT ......................... GTGGCGGTTCACCGCCGCATAAAGAAGGACAAAGCGAAGGC 474101 25 100.0 44 AAGCGAAGGC ......................... GAGCGTCACGACCTCGCCGGCGTTCCTGGTCTCCGGGAGATGCA 474170 25 100.0 46 GGGAGATGCA ......................... TCAACCAGCTCATCAATCACCTTGAACTTCTCCTCAAGCCTCCTAC 474241 25 100.0 43 AGCCTCCTAC ......................... GACACTAATGACATTAGCGGGTTTGATTGACAGGTTGACACGG 474309 25 100.0 44 GTTGACACGG ......................... AGACGGTGACCCGTGTGAGTGTAGAACTGATTACAGGCTCGTCT 474378 25 100.0 44 AGGCTCGTCT ......................... CGGGATGATACAGGGCAGGAGGAGCAGCGGCCTGGGCTGCAGGG 474447 25 100.0 44 GGCTGCAGGG ......................... CCCCCACTGGGCCCGGTTCGGGCGGTTACCGCCTCATAGACGGA 474516 25 100.0 49 CATAGACGGA ......................... TTTCGTTGTTCTTTTCCACGCTCATCCAACCCACCGAGTGACTCATCAT 474590 25 100.0 50 GACTCATCAT ......................... ATTCCCGTTCCCAGGCCGGGGCTCGGGGCTAGGCTCTGGCTCGGGCTCCT 474665 25 100.0 45 TCGGGCTCCT ......................... ACATTCTCGAACGCGTCTATGGGCACAATGAGATTGCGGAGTTCG 474735 25 100.0 39 GCGGAGTTCG ......................... CGATCGCGAGGATAATCCCGTTACGTAAAGCAACGATGT 474799 25 100.0 41 GCAACGATGT ......................... GCCTACGCATGAGCTCGGGGTGGGCCACGGCCAACACCACG 474865 25 100.0 45 CAACACCACG ......................... GATCAGCTTCAACGTGATGATCCTGGCCTTGTCCACCTGGTCGCT 474935 25 100.0 49 CCTGGTCGCT ......................... CTCTCGGGTATTTCTCGGCGCCGTAGTGCCCCTCGGGCTTGAAGCGCGT 475009 25 100.0 40 TGAAGCGCGT ......................... AACCACCTTGCCGGTTACCACACCCGCGGTTATGATCTTG 475074 25 100.0 41 TATGATCTTG ......................... TTATCGGTGCCACGCCGCGCCACCCACCTGACACTACCACC 475140 25 100.0 43 CACTACCACC ......................... GAACTGGTGGCACGCATACTGGTACGCTCAGCAGTACGCTCGA 475208 25 100.0 42 GTACGCTCGA ......................... CACAAGGGCTGGTACACTAGCGTCGAGCACTCTGGAGGCGGA 475275 25 100.0 44 TGGAGGCGGA ......................... CTCGATAGTATTTTTCATAGCTTTCAGATTACTCTTGAGCTCGT 475344 25 100.0 43 TTGAGCTCGT ......................... TATCGTCACTTTATCTTTTAGGTTTGGCGTTACAGCCCAGTAG 475412 25 100.0 47 AGCCCAGTAG ......................... GTGATACTCGCTGTGGGGATTAGCGTTGGGACGGCGCTCGCGGCGAA 475484 25 100.0 41 TCGCGGCGAA ......................... GCGTTATACCAGCGCCGATTGACGCGCTCGGGCGCTTCTAG 475550 25 100.0 43 GCGCTTCTAG ......................... CATAACTGAGAACCCAGCGCTCAAGGCGTTGTACGAGCGTAAC 475618 25 100.0 42 CGAGCGTAAC ......................... TTGAGGGGCTTGCACTCTATATCCAGGTGAACCCTAGTCGAT 475685 25 100.0 44 CCTAGTCGAT ......................... TAATTCTCCTGGTAACGCCGCTCGCAACCCCCAGTGTAGCTCCT 475754 25 100.0 42 TGTAGCTCCT ......................... TTTTAGCTAGGAGCGGCCACGCTGCAACGTATTGCGATATGA 475821 25 100.0 40 TGCGATATGA ......................... GATGACGATTGATATATGGCGGCGTGCGCGGTATGGAGAG 475886 25 100.0 42 GTATGGAGAG ......................... CAGTCGCCGTCGTACGGCTGGTGGTTGATGTAGCCGCGTGGG 475953 25 100.0 GCCGCGTGGG ......................... TAGCCTTTTT ========== ====== ====== ====== ========== ========================= 32 25 43 GAAACAACCAAGAATGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [56.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [86,271] Score: 0.18/0.18 # # Final direction: F [4.5,0.45 Confidence: HIGH] >NC_015943 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 135894 30 100.0 37 NNNNNNNNNN .T....G..TTT.A.AA.....G....... TCTATCGACCAGCGCGAAGTAAGACTGTGTGTGCCGA 135961 30 100.0 34 NNNNNNNNNN .............................. TCGACCAGTCCGTAACGTTCAGATTCGTGTACTT 136025 30 100.0 34 NNNNNNNNNN .............................. TGTGATGGGTCTGGCGACCAGCCAGTGCGGCGAG 136089 30 100.0 33 NNNNNNNNNN .............................. TTGCGCCATCGCCACCTCACCACAGCCGTCACA 136152 30 100.0 35 NNNNNNNNNN .............................. GGGTAGAGCAACCCGGCGACGAAGCCACCGATGGC 136217 30 100.0 35 NNNNNNNNNN .............................. CGGCATTACTCCTCCGTTGCCAGACCGCCAGTGTA 136282 30 100.0 35 NNNNNNNNNN .............................. ACGAGCGCGGCGGTCTTGTTCATGCTCCCGCCGAG 136347 30 100.0 35 NNNNNNNNNN .............................. AGTAGCGTTGTTGCCATTGGTATTGAGTTACTCGC 136412 30 100.0 36 NNNNNNNNNN .............................. TCCGATCTGGCTCTCGTGGTTCTGTGACGAGATAGG 136478 30 100.0 36 NNNNNNNNNN .............................. TCTCGGCGGAACCACCGCCGATCACGACAACGAGGT 136544 30 100.0 36 NNNNNNNNNN .............................. CCTGCAGGTCCGCGCCGGCCGCCGGCAATGACGTTC 136610 30 100.0 36 NNNNNNNNNN .............................. CAGGCAGATCAGATGGATATAGACGCGATTCTCGAC 136676 30 100.0 37 NNNNNNNNNN .............................. AACGTTATCGGAGGCGATGACTGATGGCAGAAAGCAA 136743 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 14 30 35 GCTTCAACCCCACGAGGGTTCGTCTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [7,6] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTTTCAGACGAACCCTTGTGGGTTTGAAGC with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-5.20,-6.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [45.0-43.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1118,107] Score: 0.18/0.18 # # Final direction: R [0.55,1.28 Confidence: MEDIUM] >NC_015931 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================== ====== 492610 26 100.0 52 GGCCTCGACT .......................... ATATGGGGTGAGGTGTTGATATGGGGCGAAGTTGAGAATTATGCCAGAATAA 492688 26 100.0 44 GCCAGAATAA .......................... TCTGCTCTCCCTCTTCTCCACCATATTCTCGATGTGCTCCTCTA 492758 26 96.2 TGCTCCTCTA G......................... GTCCTACAGT ========== ====== ====== ====== ========== ========================== 3 26 48 TCTTTCAATTCATTCTTGGTTGTTTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:69.23%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [45.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [153,347] Score: 0.18/0.18 # # Final direction: R [0.68,4.68 Confidence: HIGH] >NC_015931 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 501055 25 100.0 39 TCGTGTCGTT ......................... TACTATCCCCCATGCTGCAAGAAGCGCAGGATGTGTAAC 501119 25 100.0 39 GATGTGTAAC ......................... ATGGGAGTAGGAGCCGCTTCACGACCATCACCATCCTCG 501183 25 100.0 48 ACCATCCTCG ......................... GCACGCTACCTCACCCGGGTCACGCGCGCCACTATCACCCAGCAGGTG 501256 25 100.0 42 CCAGCAGGTG ......................... GCGAGGCCTACGATTATGTAGTCTTTGAGTGTGAAGCTCTTG 501323 25 100.0 43 GAAGCTCTTG ......................... GAAGTTTATTGTCATTGGTCGACATAAGTTTACACCGATTCAG 501391 25 100.0 41 ACCGATTCAG ......................... ACAAGTACGGGAAGGGCATCAGCGGAATTGCCAAGTACCTT 501457 25 100.0 41 CAAGTACCTT ......................... ACGATGTCGATGTATATCATAAATGCTTTGGCGAGTGTAAC 501523 25 100.0 43 CGAGTGTAAC ......................... ATCCTTCCCGACCCTGGGCGAGGCCTTCGGCCTCCCGCCGCTA 501591 25 100.0 43 CCCGCCGCTA ......................... TGGAGGAGGACGTGGGGAGGGAGTACGACAGGGAGTACAACCC 501659 25 100.0 40 AGTACAACCC ......................... ATGGGTGTTGGAACACTCGAAGAAGCTTGACGAGCTTAAA 501724 25 100.0 39 CGAGCTTAAA ......................... GTCTAGGGTATGGCGCGGCAATACAACACCAGGAGGTCT 501788 25 100.0 CAGGAGGTCT ......................... TAATCTCGAC ========== ====== ====== ====== ========== ========================= 12 25 41 CTTTCAATTCATTCTTGGTTGTTTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [40.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [80,514] Score: 0.18/0.18 # # Final direction: R [0,4.95 Confidence: HIGH] >NC_015931 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 501853 25 100.0 53 CCGATGGTAT ......................... CGTGTCTGGTATTGTAAGGATTGCGTACGAGAAGGGTATACTACGATTCGCAA 501931 25 100.0 43 CGATTCGCAA ......................... ACAATTACAACCCCAAGAAGCGTACAATAAAGCGGGGGGATAG 501999 25 100.0 46 GGGGGGATAG ......................... AGGAGGAGGTCGCGACGGTAGAGTCGCCACCGTACAACAACGTTAC 502070 25 100.0 53 ACAACGTTAC ......................... CTGGGTCACCGCCTTCGGCGCAGACCCAGCGATTCTAGACGAGATCATCAACG 502148 25 100.0 43 ATCATCAACG ......................... ATGCGCTAGATCTAGCATTGCAATAGTATATGCAATGAGCATC 502216 25 100.0 AATGAGCATC ......................... TGCATTCTTGC ========== ====== ====== ====== ========== ========================= 6 25 47 CTTTCAATTCATTCTTGGTTGTTTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [878,86] Score: 0.18/0.18 # # Final direction: R [0.18,4.5 Confidence: HIGH] >NC_015945 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =========================== ====== 1326248 27 100.0 54 NNNNNNNNNN ...G..A....CA..........T..A ATTTACGACAAAGACGATGCTTGTCCAGAAGTAGCTGGTTTGGAAGCATTCAAC 1326329 27 100.0 54 NNNNNNNNNN ........................... ATCGAAGATGCTAAAGATGCTTGTCCTAACGAAGCAGGTTCTAAAGAAATGAAC 1326410 27 100.0 54 NNNNNNNNNN ........................... GTTGCCGATAAAGACGACGCTTGTCCTAGCACTCCTGGTCTTCCTGCACTAGCT 1326491 27 100.0 60 NNNNNNNNNN ........................... GTTGCCGACAAAGACGACGAATGTCCTAACGAGGCAGGTCCTGCCGAAAATGACGGATGC 1326578 27 100.0 1 NNNNNNNNNN CC...G..A...T..........T... NNNNNNNNNN ========== ====== ====== ====== ========== =========================== 5 27 55 GGTTGTCCTGATGCTGACGGTGACGGT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [6-6] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [61.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [698,493] Score: 0/0.18 # # Final direction: R [0.27,0.37 Confidence: LOW] >NC_015948 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 1800447 19 100.0 67 NNNNNNNNNN ..........A........ CTATCACCACCCTGCAAGTGTTTCCAGTACGACTACAACTGGACCAGAACAGTGGACAGGTGTTCAC 1800533 19 100.0 53 NNNNNNNNNN ..C................ CGCACGGGGGTATGCGTCGTGCGGGGGTGCGCGAGCGTCTGAGATTCCCGAAA 1800605 19 100.0 37 NNNNNNNNNN ................... TTTGAGACGTTGTTCGGAGTTCCGATGCGCCACTCTA 1800661 19 100.0 36 NNNNNNNNNN ........G.......... TCCCGCACTGGGAGAGACAGACGAGAGCCCACGGGA 1800716 19 100.0 44 NNNNNNNNNN ................... CAGGAAAGCCCATTTTGAGCGGTTTTCCCGGCGAATCGGTGTTG 1800779 19 100.0 43 NNNNNNNNNN ................... TTCGAAACGGAATACCGGGAGGCTGTGGTGGAAACGGACGGAC 1800841 19 100.0 1 NNNNNNNNNN .....GGT........... NNNNNNNNNN ========== ====== ====== ====== ========== =================== 7 19 46 ACACCACCCTGCAAGTGTT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [50.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [113,200] Score: 0/0.18 # # Final direction: F [1.05,0 Confidence: HIGH] >NC_015949 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 1695607 35 100.0 35 NNNNNNNNNN .......C..........T.G........TT.... CTCCCTTCCGATTTCTGCCAGTCCCCACACATCCA 1695677 35 100.0 39 NNNNNNNNNN ................................... AGCAGGATTGGCAACCGCAGCGGTAGGCCCTCTTTTAAA 1695751 35 100.0 36 NNNNNNNNNN ................................... GTATTGCAGGCGTAACAGAAGTTAAATCATACATAT 1695822 35 100.0 36 NNNNNNNNNN ................................... ACATCATTATACGCATATACCACATTACTAGCACTT 1695893 35 100.0 36 NNNNNNNNNN ................................... CCTTCTTATCGTCTGCCTTAAGCTTTGGATAAAATC 1695964 35 100.0 40 NNNNNNNNNN ................................... AACCAAACCCGCCACAAGAGATGAATACATTAGAGCTTTC 1696039 35 100.0 39 NNNNNNNNNN ................................... TTTATCTTTTCAGTTTTTATATATAATAAATTGTTTTAA 1696113 35 100.0 36 NNNNNNNNNN ................................... AAGAAAAAATGGGTACTGAACATCCAGCATTAAAAC 1696184 35 100.0 37 NNNNNNNNNN ................................... AACCAGATAACATTGTCGATTTCCCGTTTTTTCTGGC 1696256 35 100.0 37 NNNNNNNNNN ................................... TCAATATCATCTGCATATAACGTATTTTGCTCTAAAT 1696328 35 100.0 37 NNNNNNNNNN ................................... CTGTTCCCTGCGATGTATATATGTCAATACCAAGTTT 1696400 35 100.0 37 NNNNNNNNNN ................................... TCAATATCATCTGCATATAACGTATTTTGCTCTAAAT 1696472 35 100.0 36 NNNNNNNNNN ................................... GCAGAACAGTAACTGTATCAAGCGGCTCTATTTTGT 1696543 35 100.0 37 NNNNNNNNNN ................................... GAATAAAGGAGACAGAAAAGGCAGTACAGATAAGAAT 1696615 35 100.0 37 NNNNNNNNNN ................................... TTAATTTGGCTTGAAGGAAGAAGAGTATTATTTATAC 1696687 35 100.0 37 NNNNNNNNNN ................................... TTATTGTTGTTTGTACAACATTAAATGCCGCTCTTAC 1696759 35 100.0 43 NNNNNNNNNN ................................... AACGTCTTTCATATCAGCACCGTCTAAAGCACCTGGCAAAATC 1696837 35 100.0 34 NNNNNNNNNN ................................... TTTATAGAGGAGTAGACACCTACTCCTCTGTAGC 1696906 35 100.0 38 NNNNNNNNNN CG...T.AT..CT...................... GAGCTGCTGCTATACAGTTCTTCGCTAAACTCTGCCTT 1696979 35 100.0 38 NNNNNNNNNN ................................... TACATAGATTTTAAAAACATAAGTCCCGAAGTTTTTAC 1697052 35 100.0 38 NNNNNNNNNN ................................... TGTACTCGTTAGCTTTTCAATTATACTATCCTCATTCA 1697125 35 100.0 37 NNNNNNNNNN ................................... CTCATCATAAAGCACACAAGCAATATACTGAACATCC 1697197 35 100.0 35 NNNNNNNNNN ................................... CCCTACTTTGCAATACCCTTAAAAAATCTGACAGC 1697267 35 100.0 37 NNNNNNNNNN ................................... CTCATCATAAAGCACACAAGCAATATACTGAACATCC 1697339 35 100.0 38 NNNNNNNNNN ................................... AGAAAGAAGGTGGTTTAATATGGCACTAACTGCACAGC 1697412 35 100.0 37 NNNNNNNNNN ................................... TAAAAGAAAAAAACGACAAATAGTAGAAGTTTGTTAT 1697484 35 100.0 35 NNNNNNNNNN ................................... AATCGTCAAAACTTCACCGTGATAAAGTGATGAAC 1697554 35 100.0 40 NNNNNNNNNN ................................... TAGTTATTGTTGCCTGCACAACACTAAATGCAGCTTTAAC 1697629 35 100.0 37 NNNNNNNNNN ................................... TTCCCCATAGCTGGTCTTGCAGCAATAATGTATAAGC 1697701 35 100.0 47 NNNNNNNNNN ................................... ATCATAACAGGTTTAAGACTATGTTTTGCAATAACTTCCTTGATGTA 1697783 35 100.0 38 NNNNNNNNNN ................................... CTTCTTGGGTTGGTGGACTTGTATGTATACTGTTATGA 1697856 35 100.0 36 NNNNNNNNNN ................................... GGCAGTAGCACAGGCGGTTAAGAGTGCGATTGCAAC 1697927 35 100.0 35 NNNNNNNNNN ................................... GCCAAGGACAGAATTTATTTACCAACCGATTTATG 1697997 35 100.0 38 NNNNNNNNNN ................................... GTATTTTAGAAATGTATCAACACAAAAAAGCCAAGCTT 1698070 35 100.0 38 NNNNNNNNNN ................................... TTCAAAGAAAAACAAGCGAGCAACAAGTTGTATCAATT 1698143 35 100.0 37 NNNNNNNNNN ................................... ACCGCCCAGCAAAACGTTCATCGCTCTTATCTTTTCC 1698215 35 100.0 36 NNNNNNNNNN ................................... GGAAAGAGTGGTTTACAGTGTCCAATCAAACGCTTC 1698286 35 100.0 38 NNNNNNNNNN ................................... CGAACAATGTCCTTGTAAATACAGCTACCAGATTAAAA 1698359 35 100.0 40 NNNNNNNNNN ................................... TTGAGGTAAGAGGAGCTTCGGCTCTAACCGCAACATATGG 1698434 35 100.0 37 NNNNNNNNNN ................................... TGATATGCTTTTAAAAGCTGAAAGGCAATGTTAAGTT 1698506 35 100.0 40 NNNNNNNNNN ................................... AAAAACTAAAACCAATTAACCACAAGATTTTGGCTATTAC 1698581 35 100.0 38 NNNNNNNNNN ................................... CTGAACAATCACTCAAATAACACTTTATTTTTCCTTTC 1698654 35 100.0 38 NNNNNNNNNN ................................... GATTTTAATCACTATTTTAGGCACTTCGGCATAGCGTT 1698727 35 100.0 37 NNNNNNNNNN ...............T................... TCCGCCAGAGCCACTTGTTATTGGCTTCAATGTTCGA 1698799 35 100.0 36 NNNNNNNNNN ................................... AATTACAGAACGGCATATTGGAACAGGAATTAAAGC 1698870 35 100.0 35 NNNNNNNNNN ................................... TTGGTTTAAACTTCTTAGAAAGTCTGGATTATAGT 1698940 35 100.0 38 NNNNNNNNNN ................................... TATGAAATAATACACCCTCGCAAGCCAAAACGAAAGAT 1699013 35 100.0 39 NNNNNNNNNN ................................... CTTCAAAACGAGAAGGAAGAATATTAGAAGGATTTGACC 1699087 35 100.0 40 NNNNNNNNNN ................................... GTTGCAAGAAAAGTTACTGTTAGAACGTTTGTAGCTTATA 1699162 35 100.0 38 NNNNNNNNNN ................................... TACACCTTCAAGAATTGTCTCTTCTTTTGACATTTTAT 1699235 35 100.0 39 NNNNNNNNNN ................................... CTGCCACGGGAGTTTAGGATACTCTAACCCTTCATTAAT 1699309 35 100.0 41 NNNNNNNNNN ................................... CTTATCCCTTCCCATGCACCTTTCCAATCACCTTTAATAAT 1699385 35 100.0 37 NNNNNNNNNN ................................... AACTGCCAAGCGGAATTGGTATTATTGAGCTGGTAGA 1699457 35 100.0 39 NNNNNNNNNN ................................... CTTCAAAACGAGAAGGAAGAATATTAGAAGGATTTGACC 1699531 35 100.0 38 NNNNNNNNNN ................................... AGCTCTTTTATTAAATTTGTCCATGCTTGATAATATTT 1699604 35 100.0 36 NNNNNNNNNN ................................... AAGCTGATTTTCACTACAACGTTACCAACCTTGACG 1699675 35 100.0 36 NNNNNNNNNN ................................... TGCAAAACTTTTATCTTTGCTATATCTGATTGTTCT 1699746 35 100.0 1 NNNNNNNNNN ................................... NNNNNNNNNN ========== ====== ====== ====== ========== =================================== 58 35 37 GTTTTAATCCCTCTTAAGGGAAGAATCTTCCCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1885,220] Score: 0.18/0.18 # # Final direction: F [0.55,0.41 Confidence: LOW] >NC_015949 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2552865 30 100.0 36 ATCTGTTAAG .............................. CGAATTCCATTTGTCATAACCAACCCAATAAGCATA 2552931 30 100.0 36 AATAAGCATA .............................. AAGTACTCAAGCATCGTGGACAATAAGCTATTCCTT 2552997 30 100.0 35 GCTATTCCTT .............................. ATGATAAGAGCGAATGGATAGATGAAAGGTGCTGG 2553062 30 100.0 36 AAGGTGCTGG .............................. TCCTTAAATACTATATTATTATTACCCTTAACCCCT 2553128 30 100.0 37 CTTAACCCCT .............................. TCTATAACTCTTTTGATAACCCCTTCTCCCCTTCCTA 2553195 30 100.0 35 CCCCTTCCTA .............................. TGATATTTGCAAGAGCATCTAACAATACTCTTGAA 2553260 30 100.0 36 TACTCTTGAA .............................. TCACTTCCCTTCAACAATATAGGAGTCTTAAACAAT 2553326 30 100.0 36 CTTAAACAAT .............................. CATCCAACAAAATTCCCTCAATAACTGTCCTGAAAG 2553392 30 100.0 36 GTCCTGAAAG .............................. AACCGTATCCGCATGTCTTCTGTAATGTCGTTTCTG 2553458 30 100.0 37 GTCGTTTCTG .............................. TAATGTCTAACTCCTGCTTTATAACTCCATCTCGCAA 2553525 30 100.0 35 CATCTCGCAA .............................. GAAAATATTGCGCTAAATAGTTTCTTAGCTCTGTA 2553590 30 100.0 35 TAGCTCTGTA .............................. CGGACAAATGGCTTGAGGACTGGGAACGCTATGTG 2553655 30 100.0 39 ACGCTATGTG .............................. TCTTGCAAACACAACGGCAGGGCGTGATTTATATACATT 2553724 30 100.0 35 TATATACATT .............................. AAACCAAGGCAAGGGAAAAGGTTAAGCCCTAATCC 2553789 30 100.0 36 GCCCTAATCC .............................. TTAGATGTCCTTGCAAATATCATAACATGTTCACTG 2553855 30 100.0 38 ATGTTCACTG .............................. GTATAATATAGCTTCTGAACTTCTAACTTCTGTGCAAC 2553923 30 100.0 36 TCTGTGCAAC .............................. TATATACAACATGCAAAACCTTCACCTATAGGCATT 2553989 30 100.0 36 TATAGGCATT .............................. AATATCCTGCTTTTTTCCCATACACATTCCATTATG 2554055 30 100.0 36 TTCCATTATG .............................. GGATAAAATACAAAAAGGCGAGATTATTGCATGTGA 2554121 30 100.0 36 TTGCATGTGA .............................. TCTCATCAGCTAATTCCCTCAAAACAACATCAAGGC 2554187 30 100.0 36 ACATCAAGGC .............................. TTGTGAAGAACCTTTCTAAATATTAACTTTACCATT 2554253 30 96.7 34 CTTTACCATT ...........C.................. TTTCTGATAGGTTAGGCCATTCGCAAATCTCAAG 2554317 30 100.0 35 AAATCTCAAG .............................. AATACAAGTATATTGCGTGGCTTGCCATAAGGCTT 2554382 30 100.0 36 CATAAGGCTT .............................. TGGAAGCATATTTAAAGAAAAAGCGTTCACTACAAA 2554448 30 96.7 37 TCACTACAAA ...........C.................. CATAAATTCGTTTACTTCTTCTATTTCGTAATGCCCA 2554515 30 96.7 GTAATGCCCA ...........C.................. AGAAATTCACTATCAAGACGACGTTTGCTGTTCGGGTTTGTAGCCTCCCCTTTGGGGATTGAAACTTTCTGATAGGTTAGGCCATTCGCAAATCTCAAG ========== ====== ====== ====== ========== ============================== 26 30 36 GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.30,-4.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [892,366] Score: 0.18/0.18 # # Final direction: F [5.46,0 Confidence: HIGH] >NC_015949 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2564413 30 100.0 35 CTATCTACGG .............................. CGAAAATATACCGATTGCCAAGTTTAAGATGAGGA 2564478 30 100.0 35 AAGATGAGGA .............................. GTAATTAGGAGGTAGGTAATCATGAGAATTTGGGT 2564543 30 100.0 36 GAATTTGGGT .............................. AATATTTCACAAACTTTTGAAAAATTTTTAGTGCAG 2564609 30 100.0 36 TTTAGTGCAG .............................. AATATTTCACAAACTTTTGAAAAATTTTTAGTGCAG 2564675 30 100.0 37 TTTAGTGCAG .............................. ACTCATTTCTTTGCTACCTATTGCAACCTTTATTTCA 2564742 30 100.0 36 CTTTATTTCA .............................. GGATTGAGAGGTTAGAAGACAGAAAAGAGACAAAAA 2564808 30 100.0 35 GAGACAAAAA .............................. TTATAATATACTTGATAACCCCATCCTTCTTTTTG 2564873 30 100.0 36 CTTCTTTTTG .............................. GCACCTAATTGGTGATACATTTTCAAGGACTGGAGG 2564939 30 100.0 36 GGACTGGAGG .............................. TTAGTTGCCTTGAAAGCTTTTGACGAATTCTATACA 2565005 30 100.0 37 ATTCTATACA .............................. TAATATACCAATGTCTGTCCTGCAACAATGTTTTGTG 2565072 30 100.0 35 ATGTTTTGTG .............................. TTGTTAAACACTTTTACAACCTCCATTCTTGATTG 2565137 30 100.0 37 TTCTTGATTG .............................. TGGAACGTATCAGGTCGGGTCTACTTGGTAACACCGA 2565204 30 100.0 35 GTAACACCGA .............................. TAATTCGACACACGTTACAAAAATCCTTTTTCTCG 2565269 30 100.0 36 CTTTTTCTCG .............................. TCGGGCAGGTGGTAAGCATTTTGCGAAAATTTGTTT 2565335 30 100.0 36 AAATTTGTTT .............................. AGTTGGGGGAGAGCTCTGTTTATATAGGTATTGAAA 2565401 30 100.0 35 GGTATTGAAA .............................. TTGTAACCTTTTGCAACATTATTTAACGCTGTCGA 2565466 30 100.0 36 ACGCTGTCGA .............................. TTGAACAATACTTTTTAATTAACTCCATTAACATTT 2565532 30 100.0 35 ATTAACATTT .............................. AGATTTCTTTGGCTATGTCTTCTTCAAGATACATA 2565597 30 100.0 35 AAGATACATA .............................. CGGGAAAGAATTTACAACAAACAAATACAGTGATA 2565662 30 100.0 36 TACAGTGATA .............................. ATACCCCGTCGTTTCGCTTACTTTTCTAAATGCTTC 2565728 30 100.0 37 TAAATGCTTC .............................. ATGTCCTTTTCTGTATCTATTTTTTCTATTGCTCTGA 2565795 30 100.0 36 ATTGCTCTGA .............................. TAGGCATGGATGATTTGTTTGAGAAAATTGAAAGTA 2565861 30 100.0 36 ATTGAAAGTA .............................. GCACACCGTGAGTACTTTCTCACAGTGTGCTCCTGC 2565927 30 100.0 36 GTGCTCCTGC .............................. TTTTTATTTTTTTCAAACCCCAAAGGGTAGGCTACG 2565993 30 100.0 35 GTAGGCTACG .............................. ACAGGTATCTCACAATCATATATTAGTGAACTTGA 2566058 30 100.0 GTGAACTTGA .............................. ATTTATATAACCCTCTACATACTCATTTATCTTCC ========== ====== ====== ====== ========== ============================== 26 30 35 GTTTGTAGCCTTCCCGTTGGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [5,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.80,-5.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [431,306] Score: 0/0.18 # # Final direction: F [4.87,0.37 Confidence: HIGH] >NC_015949 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2569259 30 100.0 36 CTATCTACGG .............................. TGATAAAAACCACAACCATTGTTTGTATTTTTCCAT 2569325 30 100.0 36 ATTTTTCCAT .............................. CTTCAAAAAGAAGAAAACAGTTAAGTATCGCTGTAA 2569391 30 100.0 36 ATCGCTGTAA .............................. TTCTATCTTCTTCAAAACTCCACAATTTGGGTAAAC 2569457 30 100.0 36 TTGGGTAAAC .............................. CCCCTCCTTAATTTATTTTTCATCCCCAACTTGAAA 2569523 30 100.0 35 CAACTTGAAA .............................. CACAAAATTATAGTTTTGTGCAGTATGAACCCTGC 2569588 30 100.0 35 TGAACCCTGC .............................. ACTCTCTCTAATTACTAATTAATTTTTTATTTTTT 2569653 30 100.0 35 TTTATTTTTT .............................. TTGCTTCCCAATCTAAAATTTTTCGAGCCTTTAGA 2569718 30 100.0 36 AGCCTTTAGA .............................. GGTTTTTCGGTCTTTTCCCATTTTTTGTTTTTGCCA 2569784 30 100.0 35 GTTTTTGCCA .............................. ATTTTTTCAATGTGTTAAATTGGTTTAATAGATTT 2569849 30 100.0 36 TAATAGATTT .............................. TCTGGTATATTCTCCACCCAGTCTCTCCCCCAGCTT 2569915 30 100.0 37 CCCCCAGCTT .............................. AGACATAGAATAACACTGCAAAAAAACATTCCCATAA 2569982 30 100.0 36 ATTCCCATAA .............................. AATTGTCGCTCTCAAAGATGTAACCCACGTTATACG 2570048 30 100.0 34 ACGTTATACG .............................. AAATCAACTAAAACTCCAATCTCTCTACCTCTTT 2570112 30 100.0 36 CTACCTCTTT .............................. CATCAATAAATCTAATACACCTTTAAAAAATTCCAG 2570178 30 100.0 35 AAAATTCCAG .............................. CCGTCAATGATTCTTTTGATTTTTCCTTCTCCTTT 2570243 30 100.0 35 CTTCTCCTTT .............................. AAATTTTCATTCTAAACCCTCCTTTTCTGTTTTTT 2570308 30 100.0 36 TCTGTTTTTT .............................. AAAAACTCCAAGCGTGCTGCCTTGTAACCGTGGTGG 2570374 30 100.0 36 ACCGTGGTGG .............................. ACGACTGCAAAATTTCTTCTACATCTTTTTTTGATG 2570440 30 100.0 40 TTTTTTGATG .............................. TCAAGAACAATATTGTTTGTTGTGTCTTCCTCATGCTCGA 2570510 30 100.0 36 TCATGCTCGA .............................. AACAACGCTCCACTCATCTAAAGCTTCCTTGTCAAA 2570576 30 100.0 35 CCTTGTCAAA .............................. ATATTTATCTTTATGTTTGTTACTACTACTCTTTC 2570641 30 100.0 36 CTACTCTTTC .............................. AGGAAGGGCTTTCAAAATTTTTAAAAGGAGGAGAAC 2570707 30 100.0 36 GGAGGAGAAC .............................. AGCAATAAAAATTTTGCTTCAAAAAGAAGAAAACAA 2570773 30 100.0 34 AAGAAAACAA .............................. GCCAAACATACAACCATCGCCAATTCATCAATTC 2570837 30 100.0 36 TCATCAATTC .............................. ACTTCTGGTTTAACTACATGAGAAACAAAACAAAGA 2570903 30 100.0 37 AAAACAAAGA .............................. TCCATGTGACCAAACTCAGATGCCACCATGCAGTACA 2570970 30 93.3 37 ATGCAGTACA ...........C...G.............. TGATTAGAACCTTCCTCTTTCCCTCCTTTCTTTCAGA 2571037 30 93.3 TTCTTTCAGA ......G........G.............. ATGAAATTTC ========== ====== ====== ====== ========== ============================== 28 30 35 GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.30,-4.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [368,299] Score: 0/0.18 # # Final direction: F [5.28,0 Confidence: HIGH] >NC_015949 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2587709 30 100.0 36 TTTTGACGGG .............................. AATTTTGTCATATCCTTCCACTCAGGGAAAGCAGAG 2587775 30 100.0 36 GAAAGCAGAG .............................. TCTCCTTTACAAAAAGAATCAGGCTCGGAGAGGCGG 2587841 30 100.0 38 GGAGAGGCGG .............................. CCAACAACGTGCCTAACACCAGCGGTGCTAAATACAAG 2587909 30 100.0 34 TAAATACAAG .............................. ATCCACGTCTTCTTGTGTAAAACTTTTAGATTGG 2587973 30 100.0 39 TTTAGATTGG .............................. TCAGCTAACTCCCTAACAACGACATCAAGTCGACTAACG 2588042 30 100.0 37 TCGACTAACG .............................. AAGTATTTCGATAATTCATCATCTAAAAAACCATCAG 2588109 30 100.0 39 AAACCATCAG .............................. GTATGAATTAACTAAACTGTCCCATGTAACAACTTCATC 2588178 30 100.0 35 CAACTTCATC .............................. TTATCAAACATGGTGCGTCAACTATGAGTAACAAT 2588243 30 100.0 37 GAGTAACAAT .............................. ACAAACTTGACGCCAAAGAGTTTGCCTATCTCACCGT 2588310 30 100.0 36 ATCTCACCGT .............................. TTCACTTTTTCCCAGCATTCGCAACAAACTTGTAAA 2588376 30 100.0 38 AACTTGTAAA .............................. TGCACACCATCAGTTGCCGGTGCAACCGACCCCTCAAC 2588444 30 100.0 35 ACCCCTCAAC .............................. AAAACCTAAAGGGGAATTTTTGTTCCTCATTGAAA 2588509 30 100.0 39 CTCATTGAAA .............................. CCGTCGTTTTAGTCGTTACAGTTATAGATATAGCTTTTG 2588578 30 100.0 36 ATAGCTTTTG .............................. CCTTTTAGAGCATAGTACATTTCAGCTACATAATCA 2588644 30 100.0 36 TACATAATCA .............................. ATGCCATCAAAGCCATAACAAAAACAACAGCAATAG 2588710 30 100.0 38 ACAGCAATAG .............................. CTTCTAAAACTGTTTTCCTTGCAAAGTCCTTGTCGATA 2588778 30 100.0 36 CTTGTCGATA .............................. AATTACCAGCAAACAGGCACTATAATTGGTTGTTGC 2588844 30 100.0 38 TGGTTGTTGC .............................. CTCTTTTGCTTTCGTACTTTTGCTTTGTCTTCAGTATC 2588912 30 100.0 36 CTTCAGTATC .............................. TCCTGTGAGGCAATGCGTTCGTTGTCTTTTTGCTTT 2588978 30 100.0 36 TTTTTGCTTT .............................. GGTGGAATGATGATATACTCAATTCTAACATCCTCA 2589044 30 100.0 37 AACATCCTCA .............................. GAAAACATCACAAAAGACGGCACACGAGGATTACTAA 2589111 30 100.0 35 GGATTACTAA .............................. GTTAAATCAAAACTCTCAATCTCTGCTATCTTTAC 2589176 30 100.0 37 CTATCTTTAC .............................. TATTTTTATTTCCACTGGCAAGAGAGGAATGGAATTA 2589243 30 96.7 AATGGAATTA ...........C.................. CCAAGAATAAACTCATCAAGGTTAGTAGTGCAGTTG ========== ====== ====== ====== ========== ============================== 24 30 36 GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.30,-4.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [576,1686] Score: 0.18/0.18 # # Final direction: F [5.55,0.18 Confidence: HIGH] >NC_015949 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2573557 30 100.0 36 CTATCTACGG .............................. GGGTTTGAGACAGGTTTTTAGATTAATCTTTAAATA 2573623 30 100.0 36 TCTTTAAATA .............................. CTTCTCATCAAATCACCGCCTTCCTCTAACGAAAAC 2573689 30 100.0 38 TAACGAAAAC .............................. ACGGCACAAGGACAGCTGAAAACCTGACCATCCCCATG 2573757 30 100.0 37 CATCCCCATG .............................. TTTCATCAATAAAAACATCCACTATAACATTAATAGC 2573824 30 100.0 34 CATTAATAGC .............................. TCTTTTAAATCTTTTTTTGTTTTTACCATTTTTA 2573888 30 100.0 37 ACCATTTTTA .............................. ACTCTATAATATAATCTCTAATTGCATCTCTTAAACT 2573955 30 100.0 38 CTCTTAAACT .............................. TCGCTTGTGTAGTGTCCTGAATCTTATCTTTTAGCTGT 2574023 30 100.0 34 TTTTAGCTGT .............................. TCTTTTAAATCTTTTTTTTCTCTTCTCGTTTTTA 2574087 30 100.0 37 CTCGTTTTTA .............................. TCTTATCTTGGCTGGATGATACAAAGCAAAGCTAATT 2574154 30 100.0 38 AAAGCTAATT .............................. GTAGCCATGTGGGAGATGGCGCATGTTTCGGTTTTTGG 2574222 30 100.0 37 CGGTTTTTGG .............................. TCGGCACCTAATAAATTCAATTAAGCGATGTCGCACA 2574289 30 100.0 34 ATGTCGCACA .............................. CAAGATTTTGCTTGCAATTGGCTTTAAGTGTTCC 2574353 30 96.7 36 TAAGTGTTCC ...........C.................. TATCATTGAAGATATAATTTAGCACTCTAGCGCTGA 2574419 30 100.0 36 CTAGCGCTGA .............................. GATGAGATAGCTGAAATGATACAAAGAGCTGGATTA 2574485 30 96.7 35 AGCTGGATTA ...........C.................. GCAATAATAAGTCTCAACACCTTTGGCTTTTGTGT 2574550 30 96.7 38 GCTTTTGTGT ...........C.................. CTAAGTAGGGGGTGGTGTTTTGACCACTCCCTAAAAAG 2574618 30 96.7 38 CCCTAAAAAG ...........C.................. TCAATTTTTAAATTCTTGAAATCTTCATTGTCTAACAG 2574686 30 96.7 TGTCTAACAG ...........C.................. GAAACAAGCT ========== ====== ====== ====== ========== ============================== 18 30 36 GTTTGTAGCCTTCCCGTTGGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [5,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.80,-5.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [58.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [522,471] Score: 0/0.18 # # Final direction: F [5.55,0.37 Confidence: HIGH] >NC_015949 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2612217 30 100.0 38 NNNNNNNNNN .............................. TAAGGGAAAACTAACGATTTAACAAGAGCAGGATGTCC 2612285 30 100.0 37 NNNNNNNNNN .............................. AAAAATCCGAGTATGAAGAAAAAATAAAGTCGTTTGT 2612352 30 100.0 38 NNNNNNNNNN .............................. ATTTTATTTGCATCTGCGGTTTTTAACCATGAATGAAT 2612420 30 100.0 36 NNNNNNNNNN .............................. ACCGCCCCGATGATAATTCCCTCATCGGGAAAGTCA 2612486 30 100.0 35 NNNNNNNNNN .............................. CTGTTTAATGCATGCCATGTAGTTTCTATCCACAT 2612551 30 100.0 37 NNNNNNNNNN .............................. ATATTTACTTTTGCCTTTTCTGTCTCAGCTTTCAAAA 2612618 30 100.0 36 NNNNNNNNNN .............................. ATGAAAAACATTAATTACATTCTTGCAAGGGATGAA 2612684 30 100.0 38 NNNNNNNNNN .............................. AAGAGACGAGTATTGGACTTGCAAAGAAATTGTATCGT 2612752 30 100.0 36 NNNNNNNNNN .............................. AATAATTTCTAAATATTCTTAATCTATCTCAAAAGA 2612818 30 100.0 35 NNNNNNNNNN .............................. ATGAACTTCTTCAAAAATTTCTAAATACTTTCAAT 2612883 30 100.0 37 NNNNNNNNNN .............................. ATCTATACCCTTACTCTTCAATATGCTGAACTCATCT 2612950 30 100.0 35 NNNNNNNNNN .............................. TGCTCAGATAGACGAAGCAGATTATATTTGTAAGC 2613015 30 100.0 36 NNNNNNNNNN .............................. GCTTTGAAATTGCCGTCTTTGTCTTTTTCGAGCTCA 2613081 30 100.0 39 NNNNNNNNNN .............................. GTACTTCAAACGTCCAAGCGATAATGTGAGCTTGCACAT 2613150 30 100.0 37 NNNNNNNNNN .............................. TGTGATTGCAATTGCTCTTGTATCTTTGATTCAATCT 2613217 30 100.0 35 NNNNNNNNNN .............................. CCACCACGTACTAATGATTGATTGATAGTACGAAT 2613282 30 100.0 35 NNNNNNNNNN .............................. TTTTTTCACCTCCCCTTGGACACGATGGCTACTAC 2613347 30 100.0 38 NNNNNNNNNN .............................. ATAAGTTCTCCACAGACAGGACAGGTGGCTAATTCCCG 2613415 30 100.0 39 NNNNNNNNNN .............................. TACCACCGCCTTACGGTGTTAATTGTAGTTTACCACTTC 2613484 30 100.0 37 NNNNNNNNNN .............................. GTCATTGATGCGTGGTGGAGAACAGTTCGTTGTCTTT 2613551 30 100.0 37 NNNNNNNNNN .............................. AATGGCTGAAAAGGTAAGCAACAAGCCGTGGGGTGCC 2613618 30 100.0 37 NNNNNNNNNN .............................. TGGCATTGTGGAGATGGACGTGGCAGATATGGTATAA 2613685 30 100.0 38 NNNNNNNNNN .............................. TGTTTTCTTGCTTTATCAACTCTGCAAGCTTTCTATTA 2613753 30 100.0 38 NNNNNNNNNN .............................. TTCTGAGAGTGAAAGGTGATTCAATGGAGCCAGAGATA 2613821 30 100.0 36 NNNNNNNNNN .............................. CCCTATCTGTTCAATTGTTAAAGTCTCATCTTCAAC 2613887 30 100.0 38 NNNNNNNNNN .............................. ATGAATGTTTCAAACACATAGCGTTCCCAGTCCTCAAG 2613955 30 100.0 36 NNNNNNNNNN .............................. AATTATTGTCCAAGATTTTAATAATTCATATTTTAT 2614021 30 100.0 36 NNNNNNNNNN .............................. ACCTGAACTGCCAACGTTGCATACCCAGCTTTTTTA 2614087 30 100.0 37 NNNNNNNNNN .............................. ACTGAATAATACACTGTCGCCCTTGTGCCTTCTATTA 2614154 30 100.0 38 NNNNNNNNNN .............................. TATCTTATTCCATCATACTCTACCTGAACTGCCAACGT 2614222 30 100.0 38 NNNNNNNNNN .............................. AGAGGTAGACGACATATTTAGACTTGTATTGATGTTAG 2614290 30 100.0 36 NNNNNNNNNN .............................. CTACCACCATTATTACTACCTGCACTATAATTTGGT 2614356 30 100.0 38 NNNNNNNNNN .............................. GTCTCAGGTTGTGTTACAAGTATGTTATAAAAATCTTT 2614424 30 100.0 36 NNNNNNNNNN .............................. ACAGTTGACCTTTTTTGATTGAAAAGAGGTGATGAA 2614490 30 100.0 37 NNNNNNNNNN .............................. TTAATGCTTGATGGTGAGAAATCACGGTTTTTCAGTT 2614557 30 100.0 38 NNNNNNNNNN ...........G.................. CACGATATCCTTTCAAACCTTCACCATCTGTTTTCAAC 2614625 30 100.0 36 NNNNNNNNNN ...........G.................. GCAAGTATCTCATACAGGATAGTGCTCGCAGTGCGA 2614691 30 100.0 38 NNNNNNNNNN ...........G.................. ATGATTTTTATGATAGAGTTGCGTTTGAAGATGTAAAA 2614759 30 100.0 38 NNNNNNNNNN ...........G.................. TAATATATATTTTACACCATAATAGCTTTTTCCTGCTC 2614827 30 100.0 36 NNNNNNNNNN ...........G.................. AAGTCTTCGCTATCATTGATACTGGTATCAGTGTTA 2614893 30 100.0 38 NNNNNNNNNN ...........G.................. ACTCTATAATGTCTACTCAATACAAGTGCATCAAAAAG 2614961 30 100.0 38 NNNNNNNNNN ...........G.................. GCAGGATGTGCCAGGTACCGTATGCACGGTACGCAGTA 2615029 30 100.0 39 NNNNNNNNNN ...........G.................. TGTCTAAATCATCAGCAAGTTTTCTAAAATCATTTGCAT 2615098 30 100.0 36 NNNNNNNNNN ...........G.................. TAGTCAGGATAATTCAATTGCGAATAAGCATAGTTT 2615164 30 100.0 38 NNNNNNNNNN .............................. TCCTGTTGGCAAACTTTTGCAAATCCCCATAATCGGCA 2615232 30 100.0 36 NNNNNNNNNN .............................. ATTATCCTTGCCATCCTATCAATTTCGAAATCTATT 2615298 30 100.0 36 NNNNNNNNNN .............................. ATTGAAGCACAAATTAAAGCCTGCAAAGAATACTGC 2615364 30 100.0 37 NNNNNNNNNN .............................. GCTTTTCCTAAATTCTAATGGGGACTCTGTCCCCATA 2615431 30 100.0 39 NNNNNNNNNN .............................. GTCAATTTCTGATCCCTTGGTAAACATACTGGTCTACTA 2615500 30 100.0 37 NNNNNNNNNN .............................. ACTACTTTAGAAATTATGAATTTTCTGTCATTGATAA 2615567 30 100.0 35 NNNNNNNNNN ...........G.................. TTATAAATCTTGCGTGAAGTGTTTGGTGAATGCAT 2615632 30 100.0 38 NNNNNNNNNN ...........G.................. GCTATAATGTCAAAATCAGGAATTTCTTTTTTAAGTTC 2615700 30 100.0 36 NNNNNNNNNN ...........G.................. ACAACACAGAAGTGCCTGCAACAAACGTTTCAGTAG 2615766 30 100.0 37 NNNNNNNNNN ...........G.................. ACAAGCACTTTCTTCATACCAATCTACCTCCAATTTT 2615833 30 100.0 38 NNNNNNNNNN ...........G.................. TAAACTATGATTGCTTTTTCATATTCTCTTATTTCTTT 2615901 30 100.0 36 NNNNNNNNNN ...........G.................. GCTTGTTAGAATATCAGCAAACAAGAGCAAAAATCA 2615967 30 100.0 40 NNNNNNNNNN ...........G.................. ATGAATAAGTATTTGGGTTTATTTTCTTTTTTTGGCTTTT 2616037 30 100.0 40 NNNNNNNNNN ...........G.................T ATTCCTCTTTTTGGTGATTTTTGTACTCTTCTTGAAGTTT 2616107 30 100.0 1 NNNNNNNNNN ...........T...G...........G.A NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 59 30 37 GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [5,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-7.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [489,152] Score: 0.18/0.18 # # Final direction: F [5.09,0.74 Confidence: HIGH] >NC_015949 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2625215 29 100.0 39 TTTTCAACCT ............................. TTTTCCCAGTTTGTGCACAATCTATTCCATATAAAATCT 2625283 29 100.0 36 TATAAAATCT ............................. TCTGACATTTAACTTATCTATCGCCCAAAGCAATTG 2625348 29 100.0 36 AAAGCAATTG ............................. TAAACAATCATATATAACTCTTTTAAATTGTATTTT 2625413 29 96.6 38 ATTGTATTTT ...........T................. CGCTTGTGGATAAAATAAATCTGGAGCCCATTTTGGGA 2625480 29 96.6 37 CATTTTGGGA ...........T................. CAACAATTTTCAAGTTTTTCAAACTGCATTTCATCAA 2625546 29 96.6 ATTTCATCAA ...........T................. CACCTATTTTTCTGAGGAAAGCCATAGCAGCCTCCTC ========== ====== ====== ====== ========== ============================= 6 29 37 GTTTGTAGCCTCCCCTTTGGGGATTGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:51.72%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-7.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [386,184] Score: 0.18/0.18 # # Final direction: F [4.95,0.37 Confidence: HIGH] >NC_015949 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2627611 30 100.0 37 TTTTTAACCT .............................. TTTAAATTTGCATTTAAATTAATCATTTGCTCTGTAG 2627678 30 100.0 36 TGCTCTGTAG .............................. AAGCAAAATTTCTCTTTTTGCCCTCGCACATACCAT 2627744 30 100.0 36 CACATACCAT .............................. ACTTTTGCGTCTCTGACAGCTTGTCGTATAGCTTCA 2627810 30 100.0 37 TATAGCTTCA .............................. ATTTTTAATTTAGACATCATTCTGCTTAATGACCCTA 2627877 30 100.0 38 AATGACCCTA .............................. GCTGAAATTGGAACTAAACCTAATGAAACTTTGATTTT 2627945 30 100.0 37 CTTTGATTTT .............................. GCTTCTTTAAATAAATTGTATAAACTCTCTCTAAACT 2628012 30 100.0 33 TCTCTAAACT .............................. TTATTATACCCCTTTTCTTGCTTTTGTAAATAC 2628075 30 100.0 36 TTGTAAATAC .............................. ATGTTTGTTTGGTCAGCAGATGATGCCAAGAGCACT 2628141 30 100.0 37 CAAGAGCACT .............................. AATCCTCTTTTGCTTTTGTTTGTTAGCTTGGGTATAA 2628208 30 100.0 TTGGGTATAA .............................. AATGATTCTC ========== ====== ====== ====== ========== ============================== 10 30 36 GTTTGTAGCCTGCCCTTTGGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [5,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.30,-3.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [233,307] Score: 0/0.18 # # Final direction: F [5.14,0.37 Confidence: HIGH] >NC_015949 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2638696 30 100.0 37 TTTTTAACCT .............................. TGTCTTGGGATGATAATATCTACGACAGTGTAAATGT 2638763 30 100.0 38 GTGTAAATGT .............................. ACTGCTTCAGCTGCTGTTTCTTTAGCTGCTTTAACAAC 2638831 30 100.0 36 CTTTAACAAC .............................. ATCCATTGCTCTTGTTTTCTTGCTTTATCAACTCTG 2638897 30 100.0 37 ATCAACTCTG .............................. AGAGCTTTCGCGGCATAAACGGTTTCCCCCCCGCAAG 2638964 30 100.0 38 CCCCCGCAAG .............................. TTTGGTTTTCATTATTTTATATCATTTTAAAAATCTTC 2639032 30 100.0 35 AAAAATCTTC .............................. ATTTTATACTCTTGCTGTATTTAGTTAAAAAACAT 2639097 30 100.0 36 TAAAAAACAT .............................. GATTATTTTCACAGAGAATATAAATTCTTCTTATTT 2639163 30 100.0 36 CTTCTTATTT .............................. TAGCTTCTTCTACTTTATTATGTTGATTATACCCAA 2639229 30 100.0 38 TTATACCCAA .............................. GCAAATCTCTTCTCAGGTCTATACGCTTCAACCTTCTC 2639297 30 100.0 37 CAACCTTCTC .............................. TTACTTGAACTAATTTATTATTAAGCTCTCTAACTAT 2639364 30 100.0 36 CTCTAACTAT .............................. TGACAATGCAATGTAAAAAAAAGACTAACCAAAAAA 2639430 30 100.0 36 AACCAAAAAA .............................. ATTTTTTAACGATGCATTCCTGAACAATAATTACAA 2639496 30 100.0 36 ATAATTACAA .............................. AGCCCTTTTTAAAAAAATTTTAAAAATTTTTTTCTT 2639562 30 96.7 35 TTTTTTTCTT .......A...................... AGACGACTTATATTCTGAGCTATGAACATATAATC 2639627 30 100.0 35 ACATATAATC .............................. AACAGTAACAATTACATAGCCTATAATACCTAAAC 2639692 30 100.0 37 ATACCTAAAC .............................. TAATGTTTAAGCGGCTCGCAATTGCGAGCCGCCGCTT 2639759 30 100.0 38 GCCGCCGCTT .............................. GTAAAAGTCCCTTCAGCTTCTTTAAATCCAAAACTTTC 2639827 30 100.0 38 CAAAACTTTC .............................. ACATTTAGTAATAACTCCACCGTCCCCTCTTGCGGGTT 2639895 30 100.0 37 CTTGCGGGTT .............................. GGATACTTTTCATGGAATGCTAATCTTATGTATGCTT 2639962 30 100.0 ATGTATGCTT .............................. CTTCGAAAAG ========== ====== ====== ====== ========== ============================== 20 30 36 GTTTGTAGCCTGCCCTTTGGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [5,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.30,-3.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [132,1100] Score: 0.18/0.18 # # Final direction: F [5.55,0.55 Confidence: HIGH] >NC_015951 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 104606 29 100.0 32 TCGTAGCCGG ............................. TACCGCGCCGTCACCGGGGCCACCCCGAACTG 104667 29 100.0 32 CCCCGAACTG ............................. CACATCGCGCTCGCGCCCCGCACGAGCAGCAC 104728 29 100.0 32 CGAGCAGCAC ............................. TTGTTCGCAGCACGGACGGCTTTGTTGAGTTC 104789 29 100.0 32 TGTTGAGTTC ............................. TCCGCAGGTCGGCCCCGTGGTCAACGGTCAGA 104850 29 96.6 AACGGTCAGA ....................A........ AACCACCTCAG ========== ====== ====== ====== ========== ============================= 5 29 32 CGGCTCACCTCCGCTCGCGCGGAGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [4,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-10.20,-11.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [21.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [303,123] Score: 0.18/0.18 # # Final direction: F [0.96,0.64 Confidence: LOW] >NC_015951 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 106946 29 100.0 33 CGCCGAGAGG ............................. CGACAGAAGATCGCCGACACCGCCCTGCGGCTC 107008 29 93.1 32 CCTGCGGCTC T...................A........ ACGAAAACAGCACCCGCCTGGGCGGTGGTGAC 107069 29 100.0 32 CGGTGGTGAC ............................. CTGTCCCATCCGCACATCGTCACCGTGCACGA 107130 29 100.0 32 CCGTGCACGA ............................. CGGGACCAGGTCCGCTGGGCGAGGTCCCCGGC 107191 29 100.0 32 GGTCCCCGGC ............................. TCGGGGGTCCACCGCTGGACGCCCTTGCCAGC 107252 29 100.0 32 CCTTGCCAGC ............................. CATCAGCAAGATCCTGGAGACGCCCGACGGGG 107313 29 100.0 CCCGACGGGG ............................. CCTTCGCGACC ========== ====== ====== ====== ========== ============================= 7 29 32 CGGCTCACCTCCGCTCGCGCGGAGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [4,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-10.20,-11.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [38.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [334,1286] Score: 0.18/0.18 # # Final direction: R [0.37,1.23 Confidence: MEDIUM] >NC_015954 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1876825 30 100.0 35 AATCGGGCAC .............................. ACGGAGAGGACGGACTCTCCTACGACGGAGTGGGA 1876890 30 100.0 36 CGGAGTGGGA .............................. GTAGACACGTCCGGCGGGGCGGTTACTATCACTCTC 1876956 30 100.0 35 TATCACTCTC .............................. CTGAACTTTGTAATGTCCTCCGGTTCGTGTTCGGA 1877021 30 100.0 34 CGTGTTCGGA .............................. GGGTTCTCCTGAAAGATATGGGGCTACTATGAGA 1877085 30 100.0 37 TACTATGAGA .............................. TGCGAGATGTAGGGCCCCGCAGCGTCGGCGTCGACGG 1877152 30 100.0 36 GCGTCGACGG .............................. TCCTCGACGGGCGACGAGGAGGGCTGGATAGTCCAC 1877218 30 100.0 36 GATAGTCCAC .............................. TCGGTTACGTCGCCGTTCTCCACGTCGGTGTAGGCG 1877284 30 100.0 36 GGTGTAGGCG .............................. GGCGGCAGAACGATTGCAGCCGGTTGATGATTTCTT 1877350 30 100.0 ATGATTTCTT .............................. CCGACGGTTC ========== ====== ====== ====== ========== ============================== 9 30 35 GTTTCAGACGTACCCTTGTGGGGTTGAAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,9] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTTCAGACGAACCCTTGTGGGTTTGAAGC with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-5.30,-4.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [276,310] Score: 0/0.18 # # Final direction: F [1.14,0.37 Confidence: MEDIUM] >NC_015951 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 116959 29 100.0 32 NNNNNNNNNN ............................. TCAGCAGGATCGTCACGAGCCCGGTCCATGCC 117020 29 100.0 32 NNNNNNNNNN ............................. GAGATGGCCAAGGGCGGGCAGCCCCAGGCGAT 117081 29 100.0 32 NNNNNNNNNN ............................. CACCACATCGACGAGGCGACGGTGGCGGCGAG 117142 29 100.0 32 NNNNNNNNNN ............................. GGTGCCGGTCGCGTGGTTGATCTGGCGGATGG 117203 29 100.0 32 NNNNNNNNNN ............................. CCGCACTGGAAGACCAGCGCCTGGACCGCCTC 117264 29 100.0 29 NNNNNNNNNN ............................. CAAGGGGTGCCGACCGGCGGCGGCGACGT 117322 29 100.0 32 NNNNNNNNNN ............................. AATCGGGACCCCCGCGACCGTGCGACCGGCCC 117383 29 100.0 31 NNNNNNNNNN ............................. TTCATCGCGGCGACCAAGAACGCCGCCGCTC 117443 29 100.0 31 NNNNNNNNNN AGTGCTCT.CG..............A... CCGCGCTCGGTGTACTTGGGGCCCTCGCCGG 117503 29 100.0 1 NNNNNNNNNN .GTGCT.T.CGCTC..GC.GA.GTGA... NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 10 29 31 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-11.30,-10.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-30] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [173,256] Score: 0/0.18 # # Final direction: F [1.05,0.37 Confidence: MEDIUM] >NC_015951 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 125601 28 100.0 33 NNNNNNNNNN ............................ GCATCTGACCGGAGGCGCCCAGTGACCGCAGGC 125662 28 100.0 33 NNNNNNNNNN ............................ GTTGCCCCACACGTTGCCGTCGGCGTATCTGAC 125723 28 100.0 33 NNNNNNNNNN ............................ ATGCTGGCCGATCATGTGACGCCAGATCGCGCG 125784 28 100.0 33 NNNNNNNNNN .GG.C...TC.A.......T.....A.. GGTCTGACGTCCCTTGGAGGGGTGGCAGGCCCA 125845 28 100.0 33 NNNNNNNNNN ..G..T...A.A................ GAAGCACGACGCGGTGACGCGTGAGCAGCTGCT 125906 28 100.0 31 NNNNNNNNNN ..G....G........T........... ATTCCGTGGGGTCAAGGACGACCAGGGCCTG 125965 28 100.0 33 NNNNNNNNNN CCGTG....................C.. GGTGCCATCCATCACTGCGTAGGCGTCGCACCG 126026 28 100.0 34 NNNNNNNNNN ..G......................C.. GCTGACCGTCGACACGGGTATCGCCCACAGTCAG 126088 28 100.0 1 NNNNNNNNNN .C.T...T...C..............AG NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 9 28 32 GTCCTCTCCGCGCGAGCGGAGGTGAGCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-11.30,-10.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [173,165] Score: 0/0.18 # # Final direction: F [0.78,0.37 Confidence: MEDIUM] >NC_015954 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 190284 37 97.3 37 TCGACGACGT ............................C........ CTGGCACTCATCCACGATTAATTGGATTGAGTGCCGG 190358 37 97.3 38 TGAGTGCCGG ............................C........ GCCTTGGACGGTCGGGATAGCCGGGACGATGTCTGGAG 190433 37 97.3 35 ATGTCTGGAG ............................C........ AGTTCGGTGCTGAGTGTTTCGTCGGTCATTTCAGT 190505 37 100.0 35 TCATTTCAGT ..................................... AGTTCATCGAGTTCGAGGTCGATGTTATTCGGCAT 190577 37 100.0 36 TATTCGGCAT ..................................... GATTTGACTCCGGCGGGTCGGAACGGTTTACGACAT 190650 37 100.0 33 TTTACGACAT ..................................... ACTATGTCGCGGATATCCTCGCGCCGCTGCCGG 190720 37 100.0 36 CCGCTGCCGG ..................................... ACGTCAGCGACGTGCTCCTCACGGCGGAGTGGTGAG 190793 37 100.0 36 GAGTGGTGAG ..................................... GGACGACGCCCATCTCGTTGCCGATAACCTCCTGAC 190866 37 100.0 37 ACCTCCTGAC ..................................... AAACCGCATGTCGGGATAGCTCCTTCTCACACCACAT 190940 37 100.0 35 CACACCACAT ..................................... CTCATCGAGTCCTTCGCCGTCGTCAGTTTGCCAGA 191012 37 100.0 35 GTTTGCCAGA ..................................... CTAGCCAACCGCCGCGGAAATCTGTGCGTTGAAGC 191084 37 100.0 35 GCGTTGAAGC ..................................... GGCCCACAATCGGGTCACAGTACAGCCGTCTGACT 191156 37 100.0 35 CCGTCTGACT ..................................... GGGGGTTAACACCGTAGTAGTACACTAAGGGTTAA 191228 37 100.0 35 TAAGGGTTAA ..................................... CCCCCGACACTGTGCAGGTCACGATTACGATTCCC 191300 37 100.0 37 TACGATTCCC ..................................... GTCAGTCATATCGGCCCACGCCGCTGCGGAGAGGCCG 191374 37 100.0 35 GGAGAGGCCG ..................................... CTGAAAGAGGAGAACGCGACGCTTCGAGGCTACTA 191446 37 100.0 36 GAGGCTACTA ..................................... CGCACGGCTCCCGACGCTGTGCAGGTCACGGTCTCC 191519 37 100.0 36 CACGGTCTCC ..................................... GGCTGAACAGGCGCGACAGTTACAGGAGGCGGAGTC 191592 37 100.0 33 AGGCGGAGTC ..................................... TTCCGGGGTCTAAGAGGCTCACCATAGTTAAAT 191662 37 100.0 36 ATAGTTAAAT ..................................... AACCGACGAGGAGGACAGTTCCCCGACCAAAGAGAC 191735 37 100.0 35 CCAAAGAGAC ..................................... ATCGTGGCCGACGCCCGGCGAGGTGTCAACGTCGA 191807 37 100.0 36 TCAACGTCGA ..................................... CACGGCCCGCGACCTCTTCGTCTCCCGCTACGAGGA 191880 37 100.0 38 GCTACGAGGA ..................................... CTCACGTTCAAGAGCCGCCGCCAGATAGTCCACGGTCG 191955 37 100.0 33 TCCACGGTCG ..................................... GAGGCCGAGGAGGACCGCGAGGCTCAACTCCGG 192025 37 100.0 34 TCAACTCCGG ..................................... AGAATGATATGTCGCTTCCCGCGGGCGGCGGTCA 192096 37 100.0 37 GCGGCGGTCA ..................................... GCTACTCTATGAATATAGAGAGGTCCCTCGTCCTCCT 192170 37 100.0 37 TCGTCCTCCT ..................................... CGAGCGACACGACCGAGGCCGGCGACGCGGTCGGCAT 192244 37 100.0 35 CGGTCGGCAT ..................................... TGAATTTGCAAGTAGGCACGCCTCACCAGCATCGA 192316 37 100.0 37 CCAGCATCGA ..................................... CGCCCACGAAGAACAGGAAGATTGCCAGCACAATCAT 192390 37 100.0 33 GCACAATCAT ..................................... GCAAGACGCAGAGCTTGCGCTGGTCGCTGACTT 192460 37 100.0 36 TCGCTGACTT ..................................... CTCGCTCAAGCGACTCCCTGTCTGGTGTGGGTCCAG 192533 37 100.0 36 GTGGGTCCAG ..................................... GGCGGTTGGCCTCGGTGAGCAGAACGATACGGCGGG 192606 37 100.0 33 ATACGGCGGG ..................................... CTCGCTCGGGTCACGGTCAAGGCTCACGCCCTC 192676 37 100.0 35 TCACGCCCTC ..................................... CGGATCAAGTAGGGGTTCGCCCGCCCACCGGCGAG 192748 37 100.0 36 CACCGGCGAG ..................................... CGACGTTCGAACCAACCCGAATGGACGCCTTGAATT 192821 37 100.0 35 GCCTTGAATT ..................................... CCTCGGTCCAGCCCTCCGGGAGCGACGACCACGCC 192893 37 100.0 35 CGACCACGCC ..................................... GTCGCCGGCAACCCACTACAGAACGTCGATACGGT 192965 37 100.0 36 TCGATACGGT ..................................... GTACTATGTACCACATAGAGGGAGACACACTATGTC 193038 37 100.0 36 ACACTATGTC ..................................... GCCGAGGAGCGACGTGCTCGTGACGGTCGCGGCGGC 193111 37 100.0 37 TCGCGGCGGC ..................................... CACTAGTGCTCACGGTGGTAGGGTTTGCCTTTAAATT 193185 37 100.0 35 CCTTTAAATT ..................................... GCAGCGGTCAGTAACGAGTAGCCCCGGGCGACCCT 193257 37 100.0 36 GGGCGACCCT ..................................... GCCGTTCGTAAGGGCGTCAGCTGGAATGCTTTCTAG 193330 37 100.0 36 TGCTTTCTAG ..................................... AACCCGGCTCCCATCGGGCGCAACGTCCGTCCCTTT 193403 37 100.0 34 CCGTCCCTTT ..................................... GCGCTCCCCTGAGTCGCGTCGTCGTGGCTGTAGG 193474 37 100.0 36 TGGCTGTAGG ..................................... GTCGACGACGCTCTGCAGCGTCTCGAGGACCCAGTC 193547 37 100.0 36 GGACCCAGTC ..................................... GGCAAGAAAAACAGCGGCAAGTCTGTTCTCATGGAG 193620 37 100.0 36 TCTCATGGAG ..................................... CGCCCGCTCAGGGCCGCCCGTCGCCGTGGAGAACGT 193693 37 100.0 34 TGGAGAACGT ..................................... CGCCAAGCTCGCCGGTGCCAGCATCCCGAACAAG 193764 37 100.0 37 CCCGAACAAG ..................................... CTCACTCGTCTGGGTCGTAACGCTCACGGCGGACAGT 193838 37 100.0 37 GGCGGACAGT ..................................... GGCTCACGCTACGGCCCTCCGGGGCCTCAGGGTGCCG 193912 37 100.0 36 CAGGGTGCCG ..................................... AAAAAACAGCGAACCGATAGGTGGATGTACCTACCT 193985 37 100.0 36 GTACCTACCT ..................................... ATCCTCCGTACTTTGCCGGTTGTTTGACTCTGCGCA 194058 37 100.0 35 ACTCTGCGCA ..................................... TAGTAATTCAGTAGATCGAGCGTTTGTCTGTCGTC 194130 37 100.0 37 GTCTGTCGTC ..................................... TCGATCACGGAGCGGATCGCGTCGGCAATATCTCCAG 194204 37 100.0 36 ATATCTCCAG ..................................... CCTCGCCTCGAGAGATATCATACGTGAAGTAGTACG 194277 37 100.0 37 AAGTAGTACG ..................................... CCGGTTCCCTCGACGACGATCTTCCCGTAGACCGCAG 194351 37 100.0 37 TAGACCGCAG ..................................... AAGAGCAGGAGCTGGACGACGGCGGTAGCTATCTTCC 194425 37 100.0 35 GCTATCTTCC ..................................... GTCAATGCGTTCGGATACGAAGCGGGTCGGAACAA 194497 37 100.0 36 GTCGGAACAA ..................................... AGGCTGGGCGCTCACTGCCGCCCCCCACCGTCGAAC 194570 37 100.0 35 ACCGTCGAAC ..................................... ACCGGGTTGATGACCTTCACGCAACCAGTGTTCAA 194642 37 100.0 CAGTGTTCAA ..................................... AGGGGGTGTA ========== ====== ====== ====== ========== ===================================== 61 37 35 GTTTCAATCCCGTTCTGGGTTTTCTGGGTGTCGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [3,14] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.60,-3.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [33.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [133,117] Score: 0/0.18 # # Final direction: R [0,5.51 Confidence: HIGH] >NC_015958 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1503090 30 100.0 36 AGAACGACAT .............................. AATGGTTAAGTTGTGTTTTGTGAAGTAAAGGCCCTG 1503156 30 100.0 37 AAAGGCCCTG .............................. TTGAGCAAAAAGAATTTTTAGCTTTTGTGGATTACAG 1503223 30 100.0 37 TGGATTACAG .............................. TACCATCCTCAATTGCGTAAACTTCAAGTGGGTACAT 1503290 30 100.0 36 GTGGGTACAT .............................. TTTTAAATCAAACATCTTCCACCACCCCTCCTATAT 1503356 30 100.0 36 CCTCCTATAT .............................. CAAGCATTGGTAATGTTATACCTATCGCAAGTGCAT 1503422 30 100.0 36 GCAAGTGCAT .............................. GCAAAAATATCGTGACAAATTCTACAAAGTTGCATT 1503488 30 100.0 36 AAGTTGCATT .............................. ACATTGAAATTACAGATAAACCAAGCATTATCCCTT 1503554 30 100.0 36 ATTATCCCTT .............................. GAGGGCTAGCAAGCCCTTTTTATTTTATGTTCATGA 1503620 30 100.0 36 ATGTTCATGA .............................. TCTGTTAGCCATATATTATCTTTTGAGGAAATTTGT 1503686 30 100.0 35 GGAAATTTGT .............................. GCACAGGCAGGAAGAAAGTTTGTCATACGTGAGAA 1503751 30 100.0 36 TACGTGAGAA .............................. GTCCCGGCAAAGATGCGGACAAGTGGATGCCAAACT 1503817 30 100.0 36 ATGCCAAACT .............................. TGTGTGACGATGTCTTTTACGATAGCGCCCAAAGTT 1503883 30 100.0 35 GCCCAAAGTT .............................. TACGAAATGCTACTACAACTAAAGGACGATATATC 1503948 30 100.0 36 ACGATATATC .............................. ACGTTATAGCAGAACCAACGCCAGAAATAACACCAT 1504014 30 100.0 36 ATAACACCAT .............................. CGAAAGCTGGCTTCATTATAGCACCAAATGTCATAT 1504080 30 100.0 36 AATGTCATAT .............................. CAAATTCCCTTAAATCTTCATCTTTTACTAGTCGCA 1504146 30 100.0 38 ACTAGTCGCA .............................. GATGGAATAAAAGGGAAGAAAGAAAAGTATATTGGAGT 1504214 30 100.0 36 ATATTGGAGT .............................. TCAAGGGTGGGATAAATATGACAGACTTCATATATA 1504280 30 100.0 36 TTCATATATA .............................. TTGTATGGCCCTTCGGGGCCTCTTTTTTTATGCCTT 1504346 30 100.0 37 TTTATGCCTT .............................. AATAAAAGAGTAAAGAATATAAGAATATATGCATATA 1504413 30 100.0 37 TATGCATATA .............................. TTGGTAGGCGAAGACGGATTCGCCTACATAGACGATG 1504480 30 100.0 36 ATAGACGATG .............................. TCTGTTTAGTTTTTCTCTGCTTATCTCAGATAAAAA 1504546 30 100.0 36 CAGATAAAAA .............................. CAATTTTGTTTTTTAATTCATCTGACAGTGTGTGTA 1504612 30 100.0 38 AGTGTGTGTA .............................. GTATTATCTTTAAAAGCCTCGGCAAACTTCCATATTAC 1504680 30 100.0 37 TCCATATTAC .............................. TCGGCATCAAGTGTTAGTTGTAAAATACCATACCCAT 1504747 30 100.0 35 CCATACCCAT .............................. TATTGTAGACGAAATGTCAATGGTGGGGAATGATG 1504812 30 100.0 35 GGGAATGATG .............................. GTATGCACTATATGGCGGTCACAGGAGCAAAAAAA 1504877 30 100.0 34 AGCAAAAAAA .............................. CAATTTTCCTTTGTTCTTCTTTCCTTCTAGCTAG 1504941 30 100.0 36 TTCTAGCTAG .............................. CAAAAATATATTTAAAGCCATTAAAAAGCTTGCAGA 1505007 30 100.0 36 AGCTTGCAGA .............................. TATTTAGCCTCCCCTCTTATATAGTCTCCTATCCAG 1505073 30 100.0 36 TCCTATCCAG .............................. TTGTTGAGCCAAGGTACTGTACGGAACTGTACTGTG 1505139 30 100.0 37 CTGTACTGTG .............................. TTAGGATAATTAAGGCTATTGAAGAAGAAGAAAACAA 1505206 30 100.0 37 AAGAAAACAA .............................. CAACAACATCAGGAACAGCTACAGTAACAGCTTCATG 1505273 30 100.0 37 CAGCTTCATG .............................. AAGATGATGAAATTGAAATATACATAGATAAATTCGT 1505340 30 100.0 36 ATAAATTCGT .............................. TATAAATGTGTGGAATGCTCAAGAAAGAGCATTTTA 1505406 30 100.0 35 GAGCATTTTA .............................. TTATAAGCTTTTTGAGGTTTATGTCAGACGAGCTA 1505471 30 100.0 35 AGACGAGCTA .............................. CTATACCGCAAATATAAGGCGGTGGCATAGATGTA 1505536 30 100.0 38 CATAGATGTA .............................. TCGGCCATCTTCTATATTGATTAGCCACTGCATCCCAG 1505604 30 100.0 36 TGCATCCCAG .............................. GAGAATTAGAATTATACAAAAGCATTTATAAAAAGT 1505670 30 100.0 36 TATAAAAAGT .............................. CCACAATCTTATACCTTGCCATTTTAACCCTCCCTT 1505736 30 100.0 ACCCTCCCTT .............................. CCATTATAAT ========== ====== ====== ====== ========== ============================== 41 30 36 CTTTCAATTCCTTATAGGTAGGCTAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.70,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [155,199] Score: 0/0.18 # # Final direction: R [0.37,4.77 Confidence: HIGH] >NC_015957 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 9970503 23 100.0 61 NNNNNNNNNN ........GG............. GCAGCTCGGCCGGAACCTGCGGGAGGTCGGCCGGAACGGTGGGCAGCTCCGCCGGGAGCTG 9970587 23 100.0 40 NNNNNNNNNN ....................... GCAGCTCGGCCGGAACCTGCGGGAGGTCGGCCGGAACGGT 9970650 23 100.0 31 NNNNNNNNNN ....................... ACAGGTCGGCCGGAACGGTGGGCAGCTCCGC 9970704 23 100.0 19 NNNNNNNNNN ....................... ACAGGTCGGCCGGAACGGT 9970746 23 100.0 1 NNNNNNNNNN ...C..G........C..GAC.. NNNNNNNNNN ========== ====== ====== ====== ========== ======================= 5 23 37 CGGGAGCTCCGCCGGGAGCTGCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [2,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.00,-4.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [28.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [349,1276] Score: 0.18/0.18 # # Final direction: F [1.05,0.18 Confidence: HIGH] >NC_015958 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2673398 30 100.0 37 NNNNNNNNNN CAC.ATT...AGG................. GCAGTATTGCTCCAGGAATTCCCGTATCATTACCTTG 2673465 30 100.0 36 NNNNNNNNNN .............................. TCTCAGGATTTTACAATAGTAATACAATTTTAAGTT 2673531 30 100.0 36 NNNNNNNNNN .............................. ATAATAGTAATAGAATATAATTAGCAAGATAAAAAA 2673597 30 100.0 36 NNNNNNNNNN .............................. TCTTCATCCGCCCATCACCCCAAGCCTGTCATTTTC 2673663 30 100.0 37 NNNNNNNNNN .............................. GTAGCAACCTTTGCCATACCATTTTCAAAGTCGATAC 2673730 30 100.0 36 NNNNNNNNNN .............................. TATCTGCTCCCCAAGCATAATAGGTCGCAGCTGTTA 2673796 30 100.0 35 NNNNNNNNNN .............................. CCCGCCCATCGCACCATTTAGCACCGCTATCCCCG 2673861 30 100.0 36 NNNNNNNNNN .............................. AGACGGCATAGTGCGTGTAGAAGGGCCTTCATACCT 2673927 30 100.0 36 NNNNNNNNNN .............................. TTTGCTTGTAGAATACCAGCCCAGTATCTAAACATA 2673993 30 100.0 38 NNNNNNNNNN .............................. TGTTTATTCTGTGCAATAGAGAACGAACAGGAATCAAT 2674061 30 100.0 36 NNNNNNNNNN .............................. ACAGCTTGAAGAAATAATCAACAACAATGATTTCTT 2674127 30 100.0 38 NNNNNNNNNN .............................. ACAACACAAACATTTACTTATACATCAACAAAAACTGT 2674195 30 100.0 35 NNNNNNNNNN .............................. TTTTAGCGTCCCATCTTCTGTAATAATTAATTTTT 2674260 30 100.0 36 NNNNNNNNNN .............................. ACACTGTAGCAGAATATAAAGATGCTAAAGACGAAA 2674326 30 100.0 35 NNNNNNNNNN .............................. TCTGCTGTAGAAGGTGCAAGAGCATACGTGCCGTC 2674391 30 100.0 37 NNNNNNNNNN .............................. TTAATTATATAATTAAATCAGTCTCCTCCTTTATATA 2674458 30 100.0 36 NNNNNNNNNN .............................. CTCCTTTCTTTTTTCACAATAGACGTTGCAATAGCA 2674524 30 100.0 36 NNNNNNNNNN .............................. ATCCTCAGATGCTGAATATTATTTCTATACAAAAGA 2674590 30 100.0 37 NNNNNNNNNN .............................. GGAGGCGACTTTTATCCCTCGGAGTATTATTTAGAGG 2674657 30 100.0 36 NNNNNNNNNN .............................. AAAAATCCTCTTTTATTTTTTAAATCTTAAATTGTA 2674723 30 100.0 36 NNNNNNNNNN .............................. GCTGAATCGTACAGGTTTAAATCCACAATTTACATT 2674789 30 100.0 36 NNNNNNNNNN .............................. GGTGCTTCACTCTTGCATGTATATTCTTTTTCACAG 2674855 30 100.0 38 NNNNNNNNNN .............................. AAATACACAAAACCGGACGGAACAACACATATATACAT 2674923 30 100.0 39 NNNNNNNNNN .............................. AAGTACATTTATCTCTTCATCAGAGAGCTTGTTTTTTGT 2674992 30 100.0 37 NNNNNNNNNN .............................. AAAATAAAAAGCAGGATTTATTCCTGCTCTAAGAATA 2675059 30 100.0 35 NNNNNNNNNN .............................. GTTGAAGAAATTACAAAGCATGCTGAAAGGTACAG 2675124 30 100.0 37 NNNNNNNNNN .............................. GGTTCTAACTCTTTTATTTTCTTTTCCTGTTCTGCTA 2675191 30 100.0 38 NNNNNNNNNN .............................. TAAAAGTATCATACAATTGCTAAAATCGCTAAAATGTT 2675259 30 100.0 36 NNNNNNNNNN .............................. ATACACCGTTGATTACGCAGAATGCCTCGGGGTATC 2675325 30 100.0 36 NNNNNNNNNN .............................. AGCCCGGAAGGCAGCAAAATCAAGGTGGACAAGACA 2675391 30 100.0 36 NNNNNNNNNN .............................. AAATTTTCCCATCTCATCTTCAAATTTTTCATGGTA 2675457 30 100.0 36 NNNNNNNNNN .............................. TTCATTTTTTCATCACCACCAAATTAATCGTTAGCA 2675523 30 100.0 38 NNNNNNNNNN .............................. GTAATACAAATTTTAGGGGTATTAGGTGCTGCATACCC 2675591 30 100.0 37 NNNNNNNNNN .............................. TTCCTTTAGGACAGTCAGGGAAAATATACATCAAGAA 2675658 30 100.0 35 NNNNNNNNNN .............................. AAACAGCTTTGTGTATACAATCACAAGAGACGAAA 2675723 30 100.0 36 NNNNNNNNNN .............................. CAGCAAGTCACTTATACAATCTTCAATTGAATTGTA 2675789 30 100.0 37 NNNNNNNNNN .............................. GAATAGCATTAGCTAAAGCTAGTTTGGATTCATCACT 2675856 30 100.0 36 NNNNNNNNNN .............................. AGTATTTTACTATGACCTTCCAAAGGAGGGGTAACT 2675922 30 100.0 36 NNNNNNNNNN .............................. ATGTTACCCTTGCAATTTTTTGAACACCATTATGTT 2675988 30 100.0 38 NNNNNNNNNN .............................. CCCGATTTTCAATGAAACTTTTTGGGGGTGGCATCCAA 2676056 30 100.0 37 NNNNNNNNNN .............................. AATACGCTAAATTAACAACTTATAGACGTTTTGAAAT 2676123 30 100.0 36 NNNNNNNNNN .............................. TGAAATGGACGGAAGCGAAGCTAGTTCTGAAGCACT 2676189 30 100.0 37 NNNNNNNNNN .............................. ACATTTACAGTGGAAGCTGAAAATGAAAAAGATGCAG 2676256 30 100.0 36 NNNNNNNNNN .............................. GCGCTGCCTGTTTCTGCACCTGTGGCGCTGGTAGAT 2676322 30 100.0 36 NNNNNNNNNN .............................. TAAATGCCATATGCTTTTGCATAAACAAAGTAGGAG 2676388 30 100.0 34 NNNNNNNNNN .............................. CTGTGCTAGTACTAAACAAAGCTTTTCATGTCTT 2676452 30 100.0 38 NNNNNNNNNN .............................. TTAAGCGTTGGTACAGTATATTCATACAATGTTATAAA 2676520 30 100.0 36 NNNNNNNNNN .........T.................... TGTATTACCTTCGAATCCTATTTTTACTGGTTTATC 2676586 30 100.0 36 NNNNNNNNNN .............................. AAAAAAACAATCTTGGAGAGAATTTCTCCAGGATTG 2676652 30 100.0 37 NNNNNNNNNN .............................. GCATTAAGTCGCTTATACAATCATCAATTGAACTATA 2676719 30 100.0 36 NNNNNNNNNN .............................. CATGGGGAGAAGTTTCAGCGCTTCTCGATAAAACTT 2676785 30 100.0 37 NNNNNNNNNN .............................. GGCGCTGCCTGTTTCTGCACCTGTGGCGCTGGTAGAT 2676852 30 100.0 35 NNNNNNNNNN .............................. AATAGTGATAAAATATAATCAACAAAGAAAAAAAT 2676917 30 100.0 37 NNNNNNNNNN .............................. TCCCAACTTTCACACTCCGCCAGCTAACACTTAGATG 2676984 30 100.0 38 NNNNNNNNNN .............................. TTTAATTTGAAGTTTAGTCCTTCTTTAATTTGTTGTAT 2677052 30 100.0 37 NNNNNNNNNN .............................. CTTTAAGTGCAATTTTTAATGTAATATCTTTTTCTTT 2677119 30 100.0 37 NNNNNNNNNN .............................. GTACCACGTGTTGCCGTTATAAAAACATCTTTATATC 2677186 30 100.0 38 NNNNNNNNNN .............................. TTATTTTTTTATCTTACATTACCAAAATTTTACAATAG 2677254 30 100.0 35 NNNNNNNNNN .............................. CAGTCGAATCAAAATACCACACATAAGCACAAGGA 2677319 30 100.0 35 NNNNNNNNNN .............................. CAGCATAGAAAATCCACAAGAGAGGGAACCAGAAA 2677384 30 100.0 36 NNNNNNNNNN .............................. AATCTACAGGTTCATCCTTTTCATAGTATTTTTTTA 2677450 30 100.0 36 NNNNNNNNNN .............................. GGCCATACTGGACAGGTGGAGGGCAGAAGGTGGCAT 2677516 30 100.0 37 NNNNNNNNNN .............................. GCAAACATTATGAACGCAAAAAACCCACAAAGTAAAG 2677583 30 100.0 37 NNNNNNNNNN .............................. GGTAAAATACCATTCTACATCGTTAATCTCTTTGCAT 2677650 30 100.0 37 NNNNNNNNNN .............................. CTGTACTAATTATAATTGTATATACAATTCATAAAAT 2677717 30 100.0 35 NNNNNNNNNN .............................. TTATAGCATACGCAAGAGAAAATTATTTTATACTC 2677782 30 100.0 38 NNNNNNNNNN .............................. CCTGCATTTTCGCCAACTACCCATCTATCTATATTTGC 2677850 30 100.0 35 NNNNNNNNNN .............................. TTGTCGTCAGATAAAACTGACGACACACGACTCAC 2677915 30 100.0 36 NNNNNNNNNN .............................. ATGGCAAAAGCTTGACAGACAGACAGATAACACAAT 2677981 30 100.0 36 NNNNNNNNNN .............................. TATGATTACCATAGTTAAACACTACTTTTTTAGGAC 2678047 30 100.0 37 NNNNNNNNNN .............................. TTAAATATATTGTGTTGTCTTTATCGTTAAAATCAAT 2678114 30 100.0 38 NNNNNNNNNN .............................. TAATCACAATTGAAAGAAGAAAATAAAAAAATAAAAAT 2678182 30 100.0 35 NNNNNNNNNN .............................. TGTTTCATCCATAGTACGCGGGCAGCTCCACATGT 2678247 30 100.0 36 NNNNNNNNNN .............................. CACAACGCAGAGAGCTGTCCGATGTTTTCCAAATTT 2678313 30 100.0 36 NNNNNNNNNN .............................. TATATTCGTTTTTGATGTTCCATATCATAGTGTTTA 2678379 30 100.0 37 NNNNNNNNNN .............................. GAGGAAAGCCGGTAACCGCCATATAGTGCTGGCACTG 2678446 30 100.0 36 NNNNNNNNNN .............................. AGTTTTATATACGATGAGAGTAAATTAGTTTTATTG 2678512 30 100.0 35 NNNNNNNNNN .............................. TCTACAGGCAATGTAAAAGGCAGCAGTGAAGTTGG 2678577 30 100.0 35 NNNNNNNNNN .............................. AATAGAAACAGACAAAAAAGAACCCTCTCTAAAAG 2678642 30 100.0 36 NNNNNNNNNN .............................. TCGAAGGTGTTTTACGAAACTGGGTATCACAAGGGA 2678708 30 100.0 37 NNNNNNNNNN .............................. GTACTGTTAAGGCTTTGTGTTGTGTTGTGACGTAAGG 2678775 30 100.0 35 NNNNNNNNNN .............................. TTTTTACAAAAAGGAGAAGGATTTTTTTGAAACAT 2678840 30 100.0 34 NNNNNNNNNN .............................. CTTGAAGGCATCATGCTTGCAATAGCAAGTGGTT 2678904 30 100.0 37 NNNNNNNNNN .............................. GAGGAAGCGTTAAAATGGGGTAAGCAAATTAGAAAGG 2678971 30 100.0 35 NNNNNNNNNN .............................. CAGAGAACACCAAACGGTTTTGAAATAGTTCACAT 2679036 30 100.0 36 NNNNNNNNNN .............................. AACAAAATTGGATGATAATTAGACAGCTTAGTAGGT 2679102 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 87 30 36 GTTTCAATTCCTTATAGGTAGGCTAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.70,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [87,182] Score: 0.18/0.18 # # Final direction: R [0.37,5.09 Confidence: HIGH] >NC_015966 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1339694 30 100.0 35 GAAAGGCCGG .............................. TGAAGCACGCAAAACTCCTTCTGTTGCTGGCCGCC 1339759 30 100.0 37 GCTGGCCGCC .............................. TTGACAATGCCGATGTGGGCGCGCTGGCCTACATCAG 1339826 30 100.0 36 CCTACATCAG .............................. GCAGGAACACCATGCTGCGGAGTGAGCGGATATTGG 1339892 30 100.0 38 CGGATATTGG .............................. ACAGGAAGGCAAGCTGACTGTCGCGATCCTGCAGGCCT 1339960 30 100.0 37 CTGCAGGCCT .............................. GGAGCACAGTTTTGTGCAAGCACCCGGCATATACTTC 1340027 30 100.0 39 CATATACTTC .............................. GGCGTACCGCTGTCGCCGATCCTGTTGCGTGAGCGCATC 1340096 30 100.0 36 TGAGCGCATC .............................. TGTACGACAAACGGAACTTGGCCCTCACGGCGAGCG 1340162 30 100.0 37 ACGGCGAGCG .............................. GACGGCGGCAAAGAAAGAATGACATTGCCGCCCTCAT 1340229 30 100.0 36 CCGCCCTCAT .............................. GGGTAGAGGCGCTCGTCCTCGTCCAGGACATAGACG 1340295 30 100.0 36 GACATAGACG .............................. GTACAGATATTTCAGAGTCCACGATCCACAGATAAT 1340361 30 100.0 36 CACAGATAAT .............................. ATTGAAGAGCATCGGCGAGATGCCGTACGTGTCGGC 1340427 30 100.0 43 ACGTGTCGGC .............................. GCACGTAAGAGGCATGAGAAAAGGAAGTATAACCTTCAGGCCA 1340500 30 100.0 37 CTTCAGGCCA .............................. CGTGTATGCCTACGAGGAGCTGAACTCGTACTGGCAG 1340567 30 100.0 35 GTACTGGCAG .............................. CTCCGAAAGAAGTTACTTCCTCAGTACAAAGAGCA 1340632 30 100.0 37 ACAAAGAGCA .............................. CTGGCCCTCGATCTGTACGCTTGGCTTTCGTATCGGG 1340699 30 100.0 37 TCGTATCGGG .............................. AATAGCTGGTACGGGGAACTGAACTTGGCGAGGATGC 1340766 30 100.0 38 GCGAGGATGC .............................. TACAGCTCCGACTGCAGCACGGCCGACAACCGCGCCCG 1340834 30 100.0 35 ACCGCGCCCG .............................. CTTGGAAAAAGTCTCGGTGGGTGATCGGCGCGTAA 1340899 30 100.0 38 CGGCGCGTAA .............................. CCTGAAAGCGCAAGGCCAGCTTCGCTACTGGCGCAACA 1340967 30 100.0 35 TGGCGCAACA .............................. TTGCATAACCTAAAAAATGAACGCTATCCTTTAGC 1341032 30 100.0 37 ATCCTTTAGC .............................. GGAAATACTGTTTGTTCAACTTTCTGGCAAATTGCTC 1341099 30 100.0 35 CAAATTGCTC .............................. GCGGTAATTACATCTGGATCGATAATGGCTTTTAC 1341164 30 100.0 39 TGGCTTTTAC .............................. TATATTTCAACAACCACCCCTCTTTCTGAAGGGAATCCA 1341233 30 100.0 35 AGGGAATCCA .............................. GATAGGGTGGCAACACCTCGCGGTAATCCTGCGGG 1341298 30 100.0 37 ATCCTGCGGG .............................. GTTGCCCGAGCCGGGCTGTTTCTTTTCACTCGTTGTG 1341365 30 100.0 36 ACTCGTTGTG .............................. GCGCGTAATGCCGGGCTGGGTGTACATGTCTCCCGA 1341431 30 100.0 37 TGTCTCCCGA .............................. TTCGCCTTCCGTATGCCGCACCAGACAACGGCTTGCG 1341498 30 100.0 37 ACGGCTTGCG .............................. TGCAGCGCCTCTACGGCTGGTCGTGGCGCAAAGCGCG 1341565 30 100.0 37 GCAAAGCGCG .............................. ACGTCGCCGCCATCCTGGCCGCCTACCGGACGATCAA 1341632 30 100.0 37 GGACGATCAA .............................. GGCGAAAACTATCGTCATCTGGGGTGGCGCTTCCCGC 1341699 30 100.0 37 CGCTTCCCGC .............................. TTACGTTCAACGTCACGCGAAAATCCACGGTCTTCCA 1341766 30 100.0 36 CGGTCTTCCA .............................. AATCATGGCGTTGGATTACGCGCAGCGCGTCGTCGC 1341832 30 100.0 38 GCGTCGTCGC .............................. CTGGACCGAGACGCCGACCGACCAGCGATTGAAGGCCG 1341900 30 100.0 38 TTGAAGGCCG .............................. GTGACGGGCGCCATCGAATGGCTTGCCCAGGATGGCGT 1341968 30 100.0 35 AGGATGGCGT .............................. ACCGCCCGCGCGTGGCGATCAGGTGCTCGGCCTCC 1342033 30 100.0 37 CTCGGCCTCC .............................. CGAAAAATACGATAGCTTTCATGATGCCCTCCTTCGG 1342100 30 100.0 34 CCTCCTTCGG .............................. ATTGGATTTTGTCGGCCAGCGGTCCTTCGGTAGA 1342164 30 100.0 36 CTTCGGTAGA .............................. GCCAAAGCCCAAGGTCGACTGTCTAAAATCGCAGAG 1342230 30 100.0 38 AATCGCAGAG .............................. GGCAGAGACGATGAAAAAGGCCGTGGACTACGAGTTCA 1342298 30 100.0 35 TACGAGTTCA .............................. GAAGTGACCGAGAGCCGGATCGTCACCACTCTCAA 1342363 30 100.0 38 CCACTCTCAA .............................. ATCTTCGATCTTATCGACGAGACGGCGCCGGTGAACTG 1342431 30 100.0 37 CGGTGAACTG .............................. CTCTGCGGCTGGTAGGGGACAGGCAGCGCCACACGCT 1342498 30 100.0 35 GCCACACGCT .............................. ATCTGAAAAGCACGGGCAATCTGCTGGTCGACGTA 1342563 30 100.0 38 GGTCGACGTA .............................. TCGGAACGCGGGCGTAATCGACCACCTCAGCCCCGACC 1342631 30 100.0 36 AGCCCCGACC .............................. CGAAGCGGTAGCCGCGCCCGCTGGCGATCACCTCGG 1342697 30 100.0 35 ATCACCTCGG .............................. TATGTTGGCCTCCGACTGGCCCACGAGCGACCCTT 1342762 30 100.0 35 AGCGACCCTT .............................. AGGTCGCGAACAAGCTCTTGCGCAATGATGGTCGC 1342827 30 100.0 37 TGATGGTCGC .............................. AGCTGCTTTGCAGCAGCTAGGACGATGGACGACACAA 1342894 30 100.0 36 GACGACACAA .............................. ATCAGGTGGAGGATTCGATCGAGGGGTGGTGCTCGG 1342960 30 100.0 36 TGGTGCTCGG .............................. TGATCGATGCGACGCGCAAGGGCCACCCGCTGCACA 1343026 30 96.7 37 CCGCTGCACA ..................A........... GCAGGGACGCGCGGCGCTCAAGTACCAGCGAAGGCCG 1343093 30 96.7 38 GCGAAGGCCG ..................A........... ACGACTTGGCACGCCTGCGGGGCGCCAGGCTGGTAACG 1343161 30 96.7 36 GCTGGTAACG ..................A........... GGGGTTGATTATGATATTGAAAGAAATGACGATTCC 1343227 30 96.7 36 TGACGATTCC ..................A........... GATCCTGCAGGTGTCCAGCGTAGCAGGTTCCGTACT 1343293 30 96.7 GTTCCGTACT ..................A........... AAAGCCACGG ========== ====== ====== ====== ========== ============================== 55 30 36 GTTTTAATCGCACCTTTTTGGTATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [262,125] Score: 0.18/0.18 # # Final direction: F [4.68,0.37 Confidence: HIGH] >NC_015964 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1917847 36 100.0 30 NNNNNNNNNN .................................... AATGAAAACGATTAATGCAAAGATTGAGAT 1917913 36 100.0 30 NNNNNNNNNN .................................... TGATGTCCGTAAACTGTCGGACTATATGAC 1917979 36 100.0 30 NNNNNNNNNN .................................... ACTGTTATATTGTGTTTACATTTTAATTTT 1918045 36 100.0 30 NNNNNNNNNN .................................... TAATCTGTTTACATTTCCAACCTTTCCACA 1918111 36 100.0 30 NNNNNNNNNN .................................... TTTCAGCCGAGCTGCATCAATATCTAATTG 1918177 36 100.0 30 NNNNNNNNNN .................................... TTTCTTGTTGTTCTAATGTTTTATGTTTTT 1918243 36 100.0 30 NNNNNNNNNN .................................... ATTTAAGTTTAGCATCTTTCGCAATAGAAA 1918309 36 100.0 30 NNNNNNNNNN .................................... TGAAATGCTAACAAATGTTGGTGCCTTATC 1918375 36 100.0 30 NNNNNNNNNN .................................... CGTAATAGACATTTTGAAGAATCCGAATGT 1918441 36 100.0 30 NNNNNNNNNN .................................... CTGTAACCGTAGCGGTTTTATGCCTGAAAA 1918507 36 100.0 30 NNNNNNNNNN .................................... TGCTCGCTTAGTATTGCCTTGGGATTTTGT 1918573 36 100.0 30 NNNNNNNNNN .................................... AGCAGAACCACCCGAACCAATCGTAGATAA 1918639 36 100.0 30 NNNNNNNNNN .................................... ATAAGCTGTGTTCTTTGCTCTCTCGCCTCG 1918705 36 100.0 30 NNNNNNNNNN .................................... ACTTCTCGGCTGTTATACAGTCTATCTAAA 1918771 36 100.0 30 NNNNNNNNNN .................................... AAAAATAGTATCTAATTCGATACGTGTAGT 1918837 36 100.0 30 NNNNNNNNNN .................................... TGAGTTAGATCAGGTTAAATTCCAAAGTGA 1918903 36 100.0 1 NNNNNNNNNN ................................TCC. NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 17 36 30 ATTATAGCACTGCGAAATGAAAAAGGGAGCTACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.00,-0.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [55.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [63,69] Score: 0/0.18 # # Final direction: F [0.78,0.27 Confidence: MEDIUM] >NC_015966 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1442301 30 100.0 37 AATCTATAAA .............................. CATGAGCGAGCCATTCCCATTCGTCACCGAGATCTGA 1442368 30 100.0 37 CGAGATCTGA .............................. AGCGCCCGCATCCGGTTGCGTACAGCCACACTCGTTT 1442435 30 100.0 35 ACACTCGTTT .............................. CCTGGAAGTTCATCCATCACATGGTCAGCGAAGAT 1442500 30 100.0 37 CAGCGAAGAT .............................. TTGGTCGTAATGCTCCAACCGCCAATCGTGCCTGATG 1442567 30 100.0 35 GTGCCTGATG .............................. AGTTAGAAAAGGTAGCCCAGGAAAGGGGCTTTAGG 1442632 30 100.0 39 GGGCTTTAGG .............................. ATGCTGCCTTTGACTGTGATCTGCACGGTGCATATAGAC 1442701 30 100.0 36 GCATATAGAC .............................. GTCCTTCGGTAGAGCGTTTGGTGCCGGTAGAACGTC 1442767 30 100.0 37 GTAGAACGTC .............................. TCGGACCAGACGGCGCCCCAGTCCTCGTATACAAGGA 1442834 30 100.0 38 TATACAAGGA .............................. TTGCTATATATCATATTTCACGCGTTCGCTTTCGAAGT 1442902 30 100.0 35 CTTTCGAAGT .............................. AAGGACGCAGTACTTCGATAGGCCTTCGTCAAAGA 1442967 30 100.0 33 TCGTCAAAGA .............................. GCTTTAATATACGCCAAACGTTGCGTTTTGCAA 1443030 30 100.0 36 CGTTTTGCAA .............................. GAAAGCGGCCGCCGGGCCGCCCTTGCTTTTCCCAGT 1443096 30 100.0 36 TTTTCCCAGT .............................. AAACTGCCCCGACCTGCGGAACGATTGCATTCCCCG 1443162 30 100.0 36 GCATTCCCCG .............................. TGCCATCTGGCGCGTGCTGGAGCGGCGCTGGCGAAG 1443228 30 100.0 36 GCTGGCGAAG .............................. GTCTGATTGTCGTGGACTATCTGCAACTGCTCCTTC 1443294 30 100.0 36 CTGCTCCTTC .............................. CAGGACGTGCCGCTTTTCAATTACGTGCTGAAACAG 1443360 30 100.0 37 GCTGAAACAG .............................. CCGCACGATCGCATCGCTGTCATAGTCGGAAAAACAC 1443427 30 100.0 36 GGAAAAACAC .............................. GCAATTTGGCTCACTCAGTCATCGTCACAACTTCTT 1443493 30 100.0 37 ACAACTTCTT .............................. GAAGAAATGGTGAAGAACGATTACTACCGGTTTGAAC 1443560 30 100.0 37 CGGTTTGAAC .............................. CCAACCGGGTTCTGGACCGCTGGGGCGAGGAGTACAA 1443627 30 100.0 38 AGGAGTACAA .............................. TCCGGCGGCAATCACGCCGTCCACATCGAACCCGCCGC 1443695 30 100.0 36 AACCCGCCGC .............................. CGATATTTACGAGCTAACTTTGCATTATTTAGCTTC 1443761 30 100.0 37 ATTTAGCTTC .............................. AGGTCGATGCTCGAAGTCTGGATCGAGCATGAAGCGT 1443828 30 100.0 36 CATGAAGCGT .............................. TATTCCTCGACGATCGATCCCTCACGCTTGTACACC 1443894 30 100.0 36 CTTGTACACC .............................. AGGCCAGCTCTCCGCACCTTCAGCGGGGCGTGACGA 1443960 30 100.0 35 GGCGTGACGA .............................. CATTCGCCAGATGCTTCGCCAGCCCCATCTCAGCA 1444025 30 100.0 36 CATCTCAGCA .............................. AGGACACGTTCACCTGTACCGACTTCAGGCCCGAGC 1444091 30 100.0 36 AGGCCCGAGC .............................. CAACTGCTGCGCAAGAGCGTCGGGGCACCGGCCCGC 1444157 30 100.0 37 ACCGGCCCGC .............................. CTCCTCGAGTTCGATGTCCTCATCCTCCCTTTGCAGA 1444224 30 100.0 CCTTTGCAGA .............................. CCGGCCTTTC ========== ====== ====== ====== ========== ============================== 30 30 36 ATTTCAATACCAAAAAGGTGCGATTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.60,-2.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [58.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [106,267] Score: 0.18/0.18 # # Final direction: R [0.64,4.68 Confidence: HIGH] >NC_015966 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1987991 29 93.1 30 TGCCGCTCTC --........................... AAAATATGATGGCCTTCATGGCGCCTCAAG 1988050 29 100.0 38 GCGCCTCAAG ............................. GGACGCCTCCCACTCGGGTTCGAGCGCCTTGCGCGTGA 1988117 29 100.0 39 TTGCGCGTGA ............................. GCAACAACAACAAACAATGGAGGTTGTCATGCACGCAAA 1988185 29 100.0 37 TGCACGCAAA ............................. GTTTACGCTACGGGAACGCATTCCGTCGTCCACAAGA 1988251 29 100.0 37 GTCCACAAGA ............................. CGACGTGCTCATGATCAAGCGACTCCATGAAGCAAGA 1988317 29 100.0 39 TGAAGCAAGA ............................. CTGGCACATACACATCCCGGTGTTCGACACGCTTACGTA 1988385 29 100.0 39 CGCTTACGTA ............................. CTTGGACGGCAGGTCCTAGCTGGCTCAGACGTGCCGAGA 1988453 29 100.0 37 CGTGCCGAGA ............................. AGTTTTTGTGAAAATGATGTGAAGTTTTAGTGAACAA 1988519 29 100.0 39 TAGTGAACAA ............................. CGGGTCTGCTACCCAGGCGATCTCGTCCGTGACGACAGA 1988587 29 100.0 37 TGACGACAGA ............................. AACGAAACCGGCTTCGATGCCGTAGCCTTCACCTACA 1988653 29 100.0 38 TTCACCTACA ............................. TGTAAGCGTAACGACTCCCCGTCGCATCGTTGGCCACA 1988720 29 100.0 39 GTTGGCCACA ............................. GCTGCGTGCCGCTTGGACGCCTGAAGCCATGCAGGATCA 1988788 29 100.0 TGCAGGATCA ............................. CCCGGCCTTT ========== ====== ====== ====== ========== ============================= 13 29 37 TTTCAATACCAAAAAGGTGCGATTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.97%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.60,-2.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [41.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [89,520] Score: 0.18/0.18 # # Final direction: R [0.37,5.36 Confidence: HIGH] >NC_015970 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 50242 37 100.0 40 TGAAATACCC ..................................... GGTGATCGGGCGTATCCGGGACAAACTCCAGAGACACGGG 50319 37 100.0 39 GAGACACGGG ..................................... GGAGAAAGTAATCCGGGGCTGGCTGGCCGACGGATATCG 50395 37 100.0 41 ACGGATATCG ..................................... GAATACGGCGGAAGCAAACTGGTTAACGGTGCGGTCGTCTG 50473 37 100.0 35 CGGTCGTCTG ..................................... AAACGGAGATGCCATGCGGTCGCTCCGTGAAATCG 50545 37 100.0 41 CGTGAAATCG ..................................... TGCTATGAACAGCGCGATTTATCAGCCGTTTTTGAATGAGA 50623 37 100.0 37 TTGAATGAGA ..................................... GATGGATCGGCCGATCGCCTTTCACCGGGCATTCGCG 50697 37 100.0 37 GGCATTCGCG ..................................... GTTGTTTAAGGATGGTTTCTTTTACAATGCGCTTGAG 50771 37 100.0 TGCGCTTGAG ..................................... CCCATTGTTA ========== ====== ====== ====== ========== ===================================== 8 37 38 GTCGTAATCCCCTTTTCATCGGGTCAAGTCTTCGGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.30,-4.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [2634,188] Score: 0.18/0.18 # # Final direction: R [0.18,0.74 Confidence: MEDIUM] >NC_015970 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 46177 28 100.0 33 CTTGCGCAGC ............................ CAGGTGCGCCCCTACGCGGAGGTGATCAAGAAG 46238 28 100.0 33 GATCAAGAAG ............................ CCAGAATCAGAAAACGCAGCATCTGAGGCGATG 46299 28 100.0 33 TGAGGCGATG ............................ CACGACCGGTGAGCACGTCGAGGATCCGAAGCG 46360 28 100.0 33 ATCCGAAGCG ............................ TCAAGAAGGTGTTGCCATAATGAAACCGCGATA 46421 28 100.0 33 AACCGCGATA ............................ CTGTCCACCTTCTGCGGCCGAAAAAGACGGCGG 46482 28 100.0 33 AAGACGGCGG ............................ CTTTGCGCTGATCTTTACGGCCCGCGTGCTTTT 46543 28 100.0 GCGTGCTTTT ............................ TTACACGCATG ========== ====== ====== ====== ========== ============================ 7 28 33 GGGTCATCCCTGCGCGCGCGGGAGTCGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.20,-6.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [30.0-28.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [94,39] Score: 0.18/0.18 # # Final direction: F [0.55,0.37 Confidence: LOW] >NC_015970 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 58327 37 100.0 36 TATGCACGGT ..................................... TTGAAAAGCTTGTGCTCAACGAACAGGCGCGTATGC 58400 37 100.0 41 GCGCGTATGC ..................................... AGGATCCTCAGGGGCAGCAGCGCATTCCGGACTGGGAGGCC 58478 37 100.0 39 CTGGGAGGCC ..................................... GATGAGCCAGACGAGGGGTGGGTAAATAAGTACTATGAC 58554 37 100.0 40 GTACTATGAC ..................................... CATCGACGGGCGTGAGATGGACGAGGATGCGCTCTACGAG 58631 37 100.0 36 GCTCTACGAG ..................................... CTGGACTGGTGCCAGCGCTACCTCGGCGAAGAGGCC 58704 37 100.0 34 CGAAGAGGCC ..................................... CGACGATCGCACGCTGCTTATGGCGCTCATTCCC 58775 37 100.0 39 GCTCATTCCC ..................................... TCATCGAAGAGATGATGGACGTGCTCGAAAAGCTTGAGC 58851 37 100.0 41 AAGCTTGAGC ..................................... GCAAGCGCTCAGCAGGCATTGTCGTTGAGCTGTAGCCAGCA 58929 37 100.0 43 GTAGCCAGCA ..................................... CGACTTGAAAGAAAGGTTCGACGTGCTCCCGTACGAGATCCCA 59009 37 100.0 40 CGAGATCCCA ..................................... TCAAGGATGAGGTGCTGGGATGGACCAACAGAGCCAACAG 59086 37 100.0 40 GAGCCAACAG ..................................... GCGACGTGGTGAGTCCCGACACCGGCCCGGAGAGTGCTAT 59163 37 100.0 38 AGAGTGCTAT ..................................... GGATCAATGAGCTTGGTTTCCAGGAGACTCCCAGCGGC 59238 37 100.0 TCCCAGCGGC ..................................... CCCATTGTTA ========== ====== ====== ====== ========== ===================================== 13 37 38 GTCGTAATCCCCTTTTCATCGGGTCAAGTCTTCGGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.30,-4.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [204,290] Score: 0/0.18 # # Final direction: R [0,0.74 Confidence: HIGH] >NC_015970 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 72658 37 100.0 38 TGCTGGCGTA ..................................... GTAAACGCTCCCGAGAAGGTGTGGGATAAAGTGAAAGA 72733 37 100.0 38 AAGTGAAAGA ..................................... TGGAGGGGTTCAGAGGATGGGAATTTGCGGGCGGAGAA 72808 37 100.0 39 GGGCGGAGAA ..................................... TGAAATCGATCTTCGACTGGTCTAGCGACTCAAGCTTGA 72884 37 100.0 41 TCAAGCTTGA ..................................... GGGACCCCCGTGTGTGCTGCAGCTTGTCTGCCACGCTGTGC 72962 37 100.0 47 CACGCTGTGC ..................................... CGTCTCCATTCTTCCACGAATGGAGAACCTGAAGTGGCGCCAGTCCA 73046 37 100.0 43 CGCCAGTCCA ..................................... GTTTTCGTTGGGAATCGTGCATTCATCTGCAATGATATCCAGC 73126 37 100.0 46 GATATCCAGC ..................................... CGAAGCCCGTGACAAGCTCGGGTGGCCGCTCAAGGTGGAATATCGT 73209 37 100.0 GGAATATCGT ..................................... CCCATTGT ========== ====== ====== ====== ========== ===================================== 8 37 41 GTCGTAATCCCCTTTTCATCGGGTCAAGTCTTCGGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.30,-4.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [51.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [189,222] Score: 0/0.18 # # Final direction: R [0.27,0.74 Confidence: MEDIUM] >NC_015970 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================================== ====== 80646 38 100.0 40 GGCGGTGTAA ...................................... GAAAGCACGGATACCAGATGTCGTGAAGAAGAGACATATC 80724 38 100.0 46 GAGACATATC ...................................... TCGGGTCGTGATCGTCAGCGTGTTGGCGTTGCCGAGGCCGAATGGG 80808 38 97.4 GCCGAATGGG C..................................... CCCATTGTTA ========== ====== ====== ====== ========== ====================================== 3 38 43 AGTCGTAATCCCCTTTTCATCGGGTCAAGTTTTCGGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.63%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.30,-4.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [53,197] Score: 0.18/0.18 # # Final direction: F [0.68,0.55 Confidence: LOW] >NC_015970 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 91071 37 100.0 44 TCCGGGTGGC ..................................... AAGAACTGGCTCATCGAGATCGGCGGGCAGGCTTATGGTCTGTA 91152 37 100.0 40 ATGGTCTGTA ..................................... TATTCCTAACCTGAACAGCGACGTCATAACCGACGAGCCC 91229 37 100.0 41 CGACGAGCCC ..................................... TACATCACGATTCGAGATCGCACGCGGCGAGTACTTTCTCG 91307 37 100.0 47 TACTTTCTCG ..................................... GGCAAAGAGACTGTATGCCAGGCGGACGTCACCCCAGCGCTTCGACG 91391 37 100.0 43 CGCTTCGACG ..................................... GGGATGAGCAGTCGGCGGTGTCCATCGTGCTGTTCATGTACGG 91471 37 100.0 46 TCATGTACGG ..................................... GGCGAACGGGATCGTGACGTGCTTTAACGTGTTTGTGTGAAGAAAA 91554 37 100.0 39 GTGAAGAAAA ..................................... GGCATCAAGCGGGTTCTTACCCGTCTGCTTCGAGAGCGC 91630 37 100.0 45 TCGAGAGCGC ..................................... TGGCGCGCTTCAGGGCGGGCAAGTTTGTAATCTTAAGTATTCAGA 91712 37 100.0 45 AGTATTCAGA ..................................... CCAAATCGACAAGGACGGCAACATCGTCGTCGGCGGCCGGGTCAT 91794 37 100.0 36 GCCGGGTCAT ..................................... CAAAACTACGGTGGGAGCCATGAAGAAGATCAAAGA 91867 37 100.0 46 AGATCAAAGA ..................................... TTGCGTCGTCCCTGCGGGCGGCGCAACGAGTCGCGGAGCGGGAGTG 91950 37 100.0 44 AGCGGGAGTG ..................................... ATGAAGAAGGTAACGAGCGGGAATTTGTAGACGTGGCAAAGGAT 92031 37 100.0 37 GGCAAAGGAT ..................................... CTCAGGACGCCCCGTTCGGGTTTGCCTTCTACTGGCA 92105 37 100.0 42 TCTACTGGCA ..................................... ACAATCAGTTCCGAGCCGTCGGGGAATATGCGTCGTACACTA 92184 37 100.0 TCGTACACTA ..................................... CCCATTGTTA ========== ====== ====== ====== ========== ===================================== 15 37 42 GTCGTAATCCCCTTTTCATCGGGTCAAGTCTTCGGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.30,-4.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [50.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [208,477] Score: 0.18/0.18 # # Final direction: R [0.27,0.92 Confidence: MEDIUM] >NC_015975 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1066225 30 100.0 35 NNNNNNNNNN TAAG.AT....................... TTGTCGCGCGACAGTGATTCAACCGCTACAAAGTC 1066290 30 100.0 40 NNNNNNNNNN .............................. TTGAGTGCCAAAAGAATTTCGTTTTGATGGATAAATACGA 1066360 30 100.0 36 NNNNNNNNNN C............................. AACTTGAAAAATCGAACGTGACAAAGCGCCCTTTAC 1066426 30 100.0 36 NNNNNNNNNN .............................. CCTTTGCCGCTTGAGCTATTTCCGAGGCTTTAGTCA 1066492 30 100.0 38 NNNNNNNNNN .............................. GTCAACAAAGGCATCAGCCACGACCTCAAGCTGGCGCA 1066560 30 100.0 36 NNNNNNNNNN .............................. GAACGTCCTGAAGGTCGTTTACCACGTTAAAAACGA 1066626 30 100.0 35 NNNNNNNNNN .............................. CGATGATCCTAAAGCAGAAATCGACCGTATGGACA 1066691 30 100.0 35 NNNNNNNNNN .............................. TTTAGCTTGTAAGAGTTATAATATATAATGTAATA 1066756 30 100.0 37 NNNNNNNNNN .............................. ATGTCATTGTTGATACATTTGCTTTTATGCAATCAAA 1066823 30 100.0 35 NNNNNNNNNN .............................. CCCAGTAACTCGCCTTTTTCTTTGCTTGCGTCTTT 1066888 30 100.0 37 NNNNNNNNNN .............................. TCTGGTATCAGGATACGGTCGATGAGCTGCGCAAAGA 1066955 30 100.0 37 NNNNNNNNNN .............................. ACGCACCGTATTTAACTTTAGCATACCCGATATAATA 1067022 30 100.0 35 NNNNNNNNNN .............................. TCTTCTTCACCAAAACAAAACTCGGCCAAAAGTTA 1067087 30 100.0 35 NNNNNNNNNN .............................. AGCTACTACACGCAAGAGTTGACTCAGCTTGAGTA 1067152 30 100.0 35 NNNNNNNNNN .............................. CTTGAGTACAACAAAGACGGTCTCGTCACAACTAA 1067217 30 100.0 35 NNNNNNNNNN .............................. CGTTAGGATATGGGAATACCAGCGTTGACGGCAAC 1067282 30 100.0 35 NNNNNNNNNN .............................. GATATGCTGCTAACCACAAAGGATATTTTTTAGCA 1067347 30 100.0 36 NNNNNNNNNN .............................. GTTGACCAGTCGCAATAGTTGCCGTTGCCGGCGGCG 1067413 30 100.0 37 NNNNNNNNNN .............................. GGAGTTAAGCGACTGTACAAACATAAGAGCTGTCTTT 1067480 30 100.0 38 NNNNNNNNNN .............................. TATGAAACTCTTAATCAATATGATTATGGATATTATAA 1067548 30 100.0 35 NNNNNNNNNN .............................. ATAAACTCTTTTTGAGCTTCTTTAATCGTGTCATC 1067613 30 100.0 35 NNNNNNNNNN .............................. CATGTTTTCTGAAACTGGTTAAGTTCATCAATGGT 1067678 30 100.0 37 NNNNNNNNNN .............................. AGGTGGATATAATGCGCAAAAACTTTGAGTTAGTTAA 1067745 30 100.0 35 NNNNNNNNNN .............................. GGAAATACGATTTCACGCCCGATTGTCACTATTGA 1067810 30 100.0 35 NNNNNNNNNN .............................. TGGTTTCTCCACCGAATACTTACCTGAATTCTGTA 1067875 30 100.0 36 NNNNNNNNNN .............................. TTTCTCTTTATTTTCAGTTTGCTATTGCAAACCGTG 1067941 30 100.0 35 NNNNNNNNNN .............................. ATCGTTTGCCCGTTGAAAACAAGAGAGTTAGTAAC 1068006 30 100.0 35 NNNNNNNNNN .............................. CTAGGTCAGGAAGATCATTCAGCAGTTCTTTCAGT 1068071 30 100.0 38 NNNNNNNNNN .............................. CAAGTTGTGAAGCCGACTGTCTAAACACGATTAAAAAG 1068139 30 100.0 38 NNNNNNNNNN .............................. CAAGTTGTGAAGCCGACTGTCTAAACACGATTAAAAAG 1068207 30 100.0 35 NNNNNNNNNN .............................. TAATCAATGTTTACTCCGCTCCCACGATAATACCA 1068272 30 100.0 37 NNNNNNNNNN .............................. GCGGGTCTGCTGCTGATGGCTGCACCCGCGGAAGCAC 1068339 30 100.0 35 NNNNNNNNNN .............................. ATTTTTACATTTGTAATTATAGCATAAAAAAGAAG 1068404 30 100.0 36 NNNNNNNNNN .............................. AGCACCCATTTCAGAGCGGTTTACTCAAAAGGTAAA 1068470 30 100.0 36 NNNNNNNNNN .............................. ATATTCATTTTTGCATTGGCTCTCGTATTAGCCAGT 1068536 30 100.0 38 NNNNNNNNNN .............................. GTCAATAGATTTTAAACAAAAAAGTTCCCGTCAGATAC 1068604 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 37 30 36 ATTTACATTCCTCATCAGTTAGATAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:73.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis suggestion: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [604,469] Score: 0/0.18 # # Final direction: R [0,0.41 Confidence: MEDIUM] >NC_015975 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1047226 36 100.0 37 ATACGGCGAA .................................... AGATATGAACTTACCAACACTTAAATATTTCAATAAA 1047299 36 100.0 37 TTTCAATAAA .................................... TTATGAAGATAGGATTTATTCAATGGAAGAGCTTAAC 1047372 36 100.0 34 AGAGCTTAAC .................................... ACAAGGAAAACACGGAAGATTTTAACAACGATAT 1047442 36 100.0 40 ACAACGATAT .................................... AAATTAAAACAACAGAAAATGGCTTGGAAATTCAAGCTAG 1047518 36 100.0 36 TTCAAGCTAG .................................... CGAACGAAACAGGCAAAAGATTGAAAAAGCACTTAA 1047590 36 100.0 39 AAGCACTTAA .................................... ATGAAAGTGAGTTTTATTATGAATCGTATTATTGAGTTT 1047665 36 100.0 36 TATTGAGTTT .................................... CATTTCACCTTTTGAATTTATGTTGGAAGAAGATGT 1047737 36 100.0 34 AAGAAGATGT .................................... CAAGCTATAAATGCAACAACTTTTTAAATTATTT 1047807 36 100.0 36 TAAATTATTT .................................... TTTAATTAAGGCTGCAAATAATAGGGACAAAAAAGG 1047879 36 100.0 38 ACAAAAAAGG .................................... TCATAGCATAATGCAAAGAGTTGTGCAAGTTCCTTGTG 1047953 36 100.0 41 GTTCCTTGTG .................................... ATACCAGATTATAATAAATATGTCACCGGAATAAGTGACAA 1048030 36 100.0 40 TAAGTGACAA .................................... TTTGTAGCAGAAGAAGAGTTGTATTTTGATGATGAACTTG 1048106 36 100.0 37 GATGAACTTG .................................... GTGCAAGTGTTTTGTGAGATAAACTTTCGTAATTATC 1048179 36 100.0 CGTAATTATC .................................... CGACGCATCC ========== ====== ====== ====== ========== ==================================== 14 36 37 GTTTTCGTCTCCTTCACTCGGAGATAGGTAATTATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.10,-6.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [415,572] Score: 0/0.18 # # Final direction: F [0.64,0 Confidence: HIGH] >NC_015976 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1915746 32 100.0 34 NNNNNNNNNN ................................ ATGTTGTGGAACGCGATGCTGTCGTCATCCCATG 1915812 32 100.0 34 NNNNNNNNNN ................................ CGTTTCCGCCTCGCGTGTAGGGAGGGATCAGCTT 1915878 32 100.0 34 NNNNNNNNNN ................................ CCGCCCAACCCGGCGCCACATATCACGGCATGGC 1915944 32 100.0 34 NNNNNNNNNN ................................ CAAACTTCGATGCCTAATTCTCAATCTCGCCCCG 1916010 32 100.0 33 NNNNNNNNNN ................................ CTGAGCCAGTCAGGCAAGCCGCCGAACCAGGAC 1916075 32 100.0 34 NNNNNNNNNN ................................ TTCCAGCGGCTGAACGTCGTGGGATGGACCCCCG 1916141 32 100.0 34 NNNNNNNNNN ................................ GCCGGCGAGATCGACGTCGCCACCATGCGATCCG 1916207 32 100.0 33 NNNNNNNNNN ................................ ACGCGGCAGACCATGTTGGGGATGTCGATGTAG 1916272 32 100.0 34 NNNNNNNNNN ................................ CGCGAGACTAGCCCGGCTTTGGTCGTCATCGAAG 1916338 32 100.0 34 NNNNNNNNNN ................................ TGGTTGAACAGATTGTCGCGCGCCTGCGCCCCAG 1916404 32 100.0 34 NNNNNNNNNN ................................ AACGGCACGACCGGCAATGCGACCACCAGCGGCT 1916470 32 100.0 35 NNNNNNNNNN ................................ AAGCCGTGGAACGCGAAGCGGCAAGGAGACGGGCC 1916537 32 100.0 36 NNNNNNNNNN ................A............... TACGCAGAAGAACATCGGGTGAAAGCAGCCAAGGCT 1916605 32 100.0 34 NNNNNNNNNN ................................ GTGTCGCTTGCTGCGCCAGCTCCGACGCCATTGA 1916671 32 100.0 35 NNNNNNNNNN ................................ GATGATGGCGGCAAGGAAGTGCAGGCACGGTGGAA 1916738 32 100.0 35 NNNNNNNNNN ................................ CAGTCACTGCACGGCTCGCTCGTCCAGTCCTCCAG 1916805 32 100.0 34 NNNNNNNNNN ................................ TTCGACCAGATAGCTGTCGCCACGTCCAGATCGA 1916871 32 100.0 33 NNNNNNNNNN ................................ GCCGTGCCAGCGGGCCATGCTGCCCGGATAAGG 1916936 32 100.0 35 NNNNNNNNNN ................................ GTTGATTTCGGTGACCTTGATGCCATGGACGATGG 1917003 32 100.0 32 NNNNNNNNNN ................................ GCGTTCGGCACGGCGATAGTCGCGGTCCGCCT 1917067 32 100.0 34 NNNNNNNNNN CGTCGCT......................... AAGCAGGAGCATCTGCGCCGCTGGCACGCGAAGG 1917133 32 100.0 36 NNNNNNNNNN ................................ GTCGCGTCATAGGTCGATGCGGTGCCGGTCAGAGAG 1917201 32 100.0 34 NNNNNNNNNN ................................ CGTCTTGATCCCAAGGACGTGCGCCTTGCGCAGA 1917267 32 100.0 35 NNNNNNNNNN ................................ TACAAGGATTTCTCGATCGACATGCAGCTCGGCAC 1917334 32 100.0 33 NNNNNNNNNN ................................ TGAACCCGTGGGGATGGTCCCCCCGTCCGCGAA 1917399 32 100.0 33 NNNNNNNNNN ................................ GGTGCGGCTTATACCAGTGATACGCCGCTGGGC 1917464 32 100.0 34 NNNNNNNNNN ................................ AACGACATCACGGCGACATCGGGCGTCTTCGACA 1917530 32 100.0 36 NNNNNNNNNN ................................ CGGGAATACGAGGCGCACCACGAGGCCCAGGCAGAG 1917598 32 100.0 33 NNNNNNNNNN .................C.............. CCCTCCGAGCCGGTGGGATATCGCTCCGGGAAC 1917663 32 100.0 36 NNNNNNNNNN ..........................T..... AGCCGCACTGCGATATATTCGGCGCCACCCTCGGCG 1917731 32 100.0 1 NNNNNNNNNN ........................T.T..G.. NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 31 32 34 GTCGCTCCCCGTGCGGGGGCGTGGATCGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.00,-6.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [196,462] Score: 0.18/0.18 # # Final direction: F [1.05,0.55 Confidence: LOW] >NC_015977 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================== ====== 2759409 22 100.0 45 NNNNNNNNNN ...................... AAAACCAAACAATACAACGAGAGATCGTTGTAAAATTTCAATCCT 2759476 22 100.0 44 NNNNNNNNNN ...................... CCAGAATATCGGTGATCGTGGTTGCTTCTTCCAATTTCAATCCA 2759542 22 100.0 44 NNNNNNNNNN ...................... TAATAAAAACGCAAATGGGTCATACTGATATTAATTTCAATCCA 2759608 22 100.0 45 NNNNNNNNNN .A.................... TTTTCTTGTTGATACTATCATATCACTTTAAAAAATTTCAATCCT 2759675 22 100.0 47 NNNNNNNNNN ...................... ACCGTGAAATCCATGTTCTGCTCCACATATCCAATGATTTCAATCCT 2759744 22 100.0 44 NNNNNNNNNN ...................... AGTTGCGACCGTGGAGTCCGGGAACACTACAAAATTTCAATCCT 2759810 22 100.0 44 NNNNNNNNNN ...................... AAATAATGACTTGCCCTCTTTCATGTAATTCGTATTTCAATCCT 2759876 22 100.0 45 NNNNNNNNNN ...................... GCCACAGTTATCTCCTGTCCCGGCAGCCACTGCGATTTCAATCCA 2759943 22 100.0 44 NNNNNNNNNN ...................... GTAGCTCCGCTGTTTTTATAATTGTAGCAAGGGATTTCAATCCA 2760009 22 100.0 47 NNNNNNNNNN ...................... ACACTATTCCCTTGGTGCTTTGCCTGTATCTGTGATATTTCAATCCA 2760078 22 100.0 47 NNNNNNNNNN ...................... ACACTATTCCCTTGGTGCTTTGCCTGTATCTGTGATATTTCAATCCA 2760147 22 100.0 46 NNNNNNNNNN ...............A...... ACAAAGATGCTTCTTTTTGGTGTATATCCGATCAAATTTCAATCCA 2760215 22 100.0 46 NNNNNNNNNN ...................... GCGCGTGCGATGGAAACTTTGAAGTACAGGTCGACATTTCAATCCA 2760283 22 100.0 45 NNNNNNNNNN ...................... CGATCTGCAATGCAGTGTATTTTTTCAATTCAAAATTTCAATCCA 2760350 22 100.0 46 NNNNNNNNNN ...................... TGATTTTTGTGGCGGGAATTTTAAAAAATCCTTCAATTTCAATCCA 2760418 22 100.0 44 NNNNNNNNNN ...................... AAATCATAGTGAAGTTAAATTTGTAAAAGATATATTTCAATCCA 2760484 22 100.0 45 NNNNNNNNNN ...................... AAAAGGGGTGGTGCTAATGATAATTAAATACATAATTTCAATCCA 2760551 22 100.0 44 NNNNNNNNNN ...................... TTGGAAATAGTATACGCAAGTCAAATTGCAGATATTTCAATCCA 2760617 22 100.0 46 NNNNNNNNNN ...................... ATAGCTGCGCCACTTGATATTGCTTCGCCATGGCGATTTCAATCCA 2760685 22 100.0 45 NNNNNNNNNN ...................... ATATATCCGCATAACCACTCTATATCTTCAAAATATTTCAATCCA 2760752 22 100.0 47 NNNNNNNNNN ...................... GCACCTTGCGGAACGGAAATTCACTACACAGTAGATATTTCAATCCA 2760821 22 100.0 46 NNNNNNNNNN ...................... GACAACGCCATTGACCTTGTATGCGACAAGAAAATATTTCAATCCA 2760889 22 100.0 45 NNNNNNNNNN ...................... TGTTGCAAACATGAGAAACGGCATGGGAGTATATATTTCAATCCA 2760956 22 100.0 44 NNNNNNNNNN ...................... AACAGCTTCGGAGCTCCCCAAACTTGGAAACGGATTTCAATCCA 2761022 22 100.0 44 NNNNNNNNNN ...................... TTATGACGCGGGAAACTATGGACGGTTAAATGCATTTCAATCCA 2761088 22 100.0 46 NNNNNNNNNN ...C.................. ACGCCGTGCTGTCGGCATCTGACATGGAGTATTTTATTTCAATCCA 2761156 22 100.0 46 NNNNNNNNNN ...................... ATCCTTTACAAACATAAATTCATAACCTAAATTATATTTCAATCCA 2761224 22 100.0 44 NNNNNNNNNN ...................... ATTGGATTACACCTAAAAGCATCAATCAATGAGATTTCAATCCA 2761290 22 100.0 47 NNNNNNNNNN ...................... ATATACGGTCTCGCAGCGGAAAACGCAGAAGAGGGAATTTCAATCCA 2761359 22 100.0 46 NNNNNNNNNN ...................... CACAAGCGACGGTAACAACACATCACAAGCAGATCATTTCAATCCA 2761427 22 100.0 46 NNNNNNNNNN ...................... CAGTAGTCATTGATCTGATTTCTTACGTTTGCCATATTTCAATCCA 2761495 22 100.0 46 NNNNNNNNNN ...................... GTGTGAAGAACAAGGTAACAGATGCCGGATGGTCAATTTCAATCCA 2761563 22 100.0 45 NNNNNNNNNN ...................... CGATTAAACTTATATTTCACAAACACTTTCGACAATTTCAATCCA 2761630 22 100.0 44 NNNNNNNNNN ...................... TGTGACTCGTCTTGATCTTGCTATTGACAATGTATTTCAATCCA 2761696 22 100.0 46 NNNNNNNNNN ...................... ACAGCTCCTGGGTGGTACTTGATGCAAACTGGGGCATTTCAATCCA 2761764 22 100.0 46 NNNNNNNNNN ...................... ATCGTGACTGCGTGTATGTGCAGACCAAGACGGGCATTTCAATCCA 2761832 22 100.0 45 NNNNNNNNNN ...................... TGATAACGCCTAGACTTACACCGTAGGCGCGCAAATTTCAATCCA 2761899 22 100.0 44 NNNNNNNNNN ...................... TTCTTTGGTGAATTGTATCGGATAGGTGCATCAATTTCAATCCA 2761965 22 100.0 46 NNNNNNNNNN ...................... TTGGACTCACGGAAAAACACCGCAAACATCTGAAAATTTCAATCCA 2762033 22 100.0 45 NNNNNNNNNN ...................... GGGCATCGGGCAATGGATGATGCATGGAGCCATAATTTCAATCCA 2762100 22 100.0 45 NNNNNNNNNN ...................... GATGGCGTACTGGCTGTCAGAACTTGCGCTTAGTATTTCAATCCA 2762167 22 100.0 47 NNNNNNNNNN ...................... GGCGTTAGGGTCTGGCGTGCTCCGTGGCGATGAGTTATTTCAATCCA 2762236 22 100.0 44 NNNNNNNNNN ...................... CATATAAGACGCCCTGGAATTCTGCGCCGACAGATTTCAATCCA 2762302 22 100.0 47 NNNNNNNNNN ...................... GACATGGCTATTCTGAAGAACTGCGGCATCTCCAAGATTTCAATCCA 2762371 22 100.0 45 NNNNNNNNNN ...................... CGGACAGATGGGCGGTAAGATGCTCGGAGGCGGAATTTCAATCCA 2762438 22 100.0 45 NNNNNNNNNN ...................... GGAGATCGCACAGGCAATAGCTGACGGAAACCTTATTTCAATCCA 2762505 22 100.0 46 NNNNNNNNNN ...................... CGATCAGACAAACGTGACGATCTCCGTCGATCTCGATTTCAATCCA 2762573 22 100.0 46 NNNNNNNNNN ...................... AAAACAAACTCATGTTACGGTCGATTATGTACATGATTTCAATCCA 2762641 22 100.0 45 NNNNNNNNNN ...................... AAACGGGCGTAGCTTGTCACGTATGACGCTATTTATTTCAATCCA 2762708 22 100.0 47 NNNNNNNNNN ...................... TTTTGCGGCGGCAAACTGGGATGAATACCTCTGCATATTTCAATCCA 2762777 22 100.0 44 NNNNNNNNNN ...................... TGTCAAAGACGGAGTAACCAACTTGGACAACATATTTCAATCCA 2762843 22 100.0 47 NNNNNNNNNN ...................... CAGACACGGTAAATCTTGCCAGCACCTATAACTTCTATTTCAATCCA 2762912 22 100.0 44 NNNNNNNNNN ...................... GGCGTTTGGAGTTATCAAAGAGATAATTCAATCATTTCAATCCA 2762978 22 100.0 45 NNNNNNNNNN ...................... GACAACGCCACAGGATAACGACGAGGAGCAGGTTATTTCAATCCA 2763045 22 100.0 45 NNNNNNNNNN ...................... TCTTGCAAGCCGTCAAAATCGTCTGCAATAGACTATTTCAATCCA 2763112 22 100.0 43 NNNNNNNNNN ...................... CACAAGCCTGTCATCCTCAATGTCGGAATATGATTTCAATCCA 2763177 22 100.0 44 NNNNNNNNNN ...................... ATCTGCAATTCAGCAGCGGATTCAGCAGATTGAATTTCAATCCA 2763243 22 100.0 44 NNNNNNNNNN ...................... TGTCAAAGATGGAGTAACCAATCTAGATAATATATTTCAATCCA 2763309 22 100.0 46 NNNNNNNNNN ...................... TTGTCCAAACGTCCATTATAAAATGCACACGACAGATTTCAATCCA 2763377 22 100.0 44 NNNNNNNNNN ...................... GACGAACCGAACGGCGAATCGACGTTAAGTTTTATTTCAATCCA 2763443 22 100.0 44 NNNNNNNNNN ...................... ATCGAAGCGGCGGCACAAGCTAGGCATATAGCGATTTCAATCCA 2763509 22 100.0 44 NNNNNNNNNN ...................... GAAGAAAGCGTTAAAAGCCACATGAATTCCTATATTTCAATCCA 2763575 22 100.0 44 NNNNNNNNNN ...................... CTCAACCTTTGCTTCCATATCAATCATCTGCATATTTCAATCCA 2763641 22 100.0 47 NNNNNNNNNN ...................... GTGTTTCCTGTTCATTAGCTTTCAATGGAATCAGGGATTTCAATCCA 2763710 22 100.0 45 NNNNNNNNNN ...................... TCCGTCTTGATGTGCTCGTCGACCCTGCTCGCAGATTTCAATCCA 2763777 22 100.0 46 NNNNNNNNNN ...................... TCACAGGAGCTAAACGTTTAGGTCACTTTATAACAATTTCAATCCA 2763845 22 100.0 46 NNNNNNNNNN ...................... CTCTGCTCCATGATCTGCTCAACTAAAGCGTTAGCATTTCAATCCA 2763913 22 100.0 45 NNNNNNNNNN ...................... ATTGCTGCGTTGGAATCCGTCATCATCATTTTTTATTTCAATCCA 2763980 22 100.0 45 NNNNNNNNNN ...................... AGCTGCGCGAGGAGTACAAGGATTATGGTTATGCATTTCAATCCA 2764047 22 100.0 45 NNNNNNNNNN ...................... CATCATGGTAAGAGTCATCAAAAAAAGAGTGAGCATTTCAATCCA 2764114 22 100.0 45 NNNNNNNNNN ...................... GCCAGACAAGAAAAACATGGAAAAATGGCTTGATATTTCAATCCA 2764181 22 100.0 46 NNNNNNNNNN ...................... GAAGCATAGGGGGGGCGGTTTTATGGATATTATGAATTTCAATCCA 2764249 22 100.0 45 NNNNNNNNNN ...................... GAATATTGGCGATAAGATTGTCTCTATTATCAATATTTCAATCCA 2764316 22 100.0 47 NNNNNNNNNN ...................... GCATACTTTGCGTCCGTCTGTGCCAGCTCTACATCTATTTCAATCCA 2764385 22 100.0 45 NNNNNNNNNN ...................... GTATAATATGTATAAAAGAGATTACCATCCAGACATTTCAATCCA 2764452 22 100.0 45 NNNNNNNNNN ...................... CCGTACATGCCATTCTTACGCCGTGCAATGCCGTATTTCAATCCA 2764519 22 100.0 45 NNNNNNNNNN ...................... TCTGCTCCATGATCTGCTCAACTAAAGCGTTAGCATTTCAATCCA 2764586 22 100.0 46 NNNNNNNNNN ...................... TCGCTGTGGAGTGAGCACCTGTGTGCCGGTATAGCATTTCAATCCA 2764654 22 100.0 46 NNNNNNNNNN ...................... TCGATCAAGTATGTATCTTGCCACTTAAGACCAGGATTTCAATCCA 2764722 22 100.0 44 NNNNNNNNNN ...................... ATGAACACAAGTCCAATAGCGGCGCCCGTAGTAATTTCAATCCA 2764788 22 100.0 1 NNNNNNNNNN ...................... NNNNNNNNNN ========== ====== ====== ====== ========== ====================== 81 22 45 CGCTCCCCTCACAGGGAGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [4,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-3.80,-3.80] Score: 0/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [631,187] Score: 0.18/0.18 # # Final direction: R [0.55,0.68 Confidence: LOW] >NC_015977 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================= ====== 2759400 33 90.9 34 ATCTGACTAC --........T...................... AAAACCAAACAATACAACGAGAGATCGTTGTAAA 2759467 33 97.0 33 TCGTTGTAAA ..........T...................... CCAGAATATCGGTGATCGTGGTTGCTTCTTCCA 2759533 33 100.0 33 GCTTCTTCCA ................................. TAATAAAAACGCAAATGGGTCATACTGATATTA 2759599 33 97.0 34 ACTGATATTA ............A.................... TTTTCTTGTTGATACTATCATATCACTTTAAAAA 2759666 33 97.0 36 ACTTTAAAAA ..........T...................... ACCGTGAAATCCATGTTCTGCTCCACATATCCAATG 2759735 33 97.0 33 ATATCCAATG ..........T...................... AGTTGCGACCGTGGAGTCCGGGAACACTACAAA 2759801 33 97.0 33 ACACTACAAA ..........T...................... AAATAATGACTTGCCCTCTTTCATGTAATTCGT 2759867 33 97.0 34 TGTAATTCGT ..........T...................... GCCACAGTTATCTCCTGTCCCGGCAGCCACTGCG 2759934 33 100.0 33 AGCCACTGCG ................................. GTAGCTCCGCTGTTTTTATAATTGTAGCAAGGG 2760000 33 100.0 36 GTAGCAAGGG ................................. ACACTATTCCCTTGGTGCTTTGCCTGTATCTGTGAT 2760069 33 100.0 36 TATCTGTGAT ................................. ACACTATTCCCTTGGTGCTTTGCCTGTATCTGTGAT 2760138 33 97.0 35 TATCTGTGAT ..........................A...... ACAAAGATGCTTCTTTTTGGTGTATATCCGATCAA 2760206 33 100.0 35 ATCCGATCAA ................................. GCGCGTGCGATGGAAACTTTGAAGTACAGGTCGAC 2760274 33 100.0 34 ACAGGTCGAC ................................. CGATCTGCAATGCAGTGTATTTTTTCAATTCAAA 2760341 33 100.0 35 TCAATTCAAA ................................. TGATTTTTGTGGCGGGAATTTTAAAAAATCCTTCA 2760409 33 100.0 33 AAATCCTTCA ................................. AAATCATAGTGAAGTTAAATTTGTAAAAGATAT 2760475 33 100.0 34 TAAAAGATAT ................................. AAAAGGGGTGGTGCTAATGATAATTAAATACATA 2760542 33 100.0 33 TAAATACATA ................................. TTGGAAATAGTATACGCAAGTCAAATTGCAGAT 2760608 33 100.0 35 AATTGCAGAT ................................. ATAGCTGCGCCACTTGATATTGCTTCGCCATGGCG 2760676 33 100.0 34 CGCCATGGCG ................................. ATATATCCGCATAACCACTCTATATCTTCAAAAT 2760743 33 100.0 36 TCTTCAAAAT ................................. GCACCTTGCGGAACGGAAATTCACTACACAGTAGAT 2760812 33 100.0 35 CACAGTAGAT ................................. GACAACGCCATTGACCTTGTATGCGACAAGAAAAT 2760880 33 100.0 34 ACAAGAAAAT ................................. TGTTGCAAACATGAGAAACGGCATGGGAGTATAT 2760947 33 100.0 33 GGGAGTATAT ................................. AACAGCTTCGGAGCTCCCCAAACTTGGAAACGG 2761013 33 100.0 33 TTGGAAACGG ................................. TTATGACGCGGGAAACTATGGACGGTTAAATGC 2761079 33 97.0 35 GGTTAAATGC ..............C.................. ACGCCGTGCTGTCGGCATCTGACATGGAGTATTTT 2761147 33 100.0 35 GGAGTATTTT ................................. ATCCTTTACAAACATAAATTCATAACCTAAATTAT 2761215 33 100.0 33 CCTAAATTAT ................................. ATTGGATTACACCTAAAAGCATCAATCAATGAG 2761281 33 100.0 36 AATCAATGAG ................................. ATATACGGTCTCGCAGCGGAAAACGCAGAAGAGGGA 2761350 33 100.0 35 AGAAGAGGGA ................................. CACAAGCGACGGTAACAACACATCACAAGCAGATC 2761418 33 100.0 35 CAAGCAGATC ................................. CAGTAGTCATTGATCTGATTTCTTACGTTTGCCAT 2761486 33 100.0 35 CGTTTGCCAT ................................. GTGTGAAGAACAAGGTAACAGATGCCGGATGGTCA 2761554 33 100.0 34 CGGATGGTCA ................................. CGATTAAACTTATATTTCACAAACACTTTCGACA 2761621 33 100.0 33 ACTTTCGACA ................................. TGTGACTCGTCTTGATCTTGCTATTGACAATGT 2761687 33 100.0 35 TTGACAATGT ................................. ACAGCTCCTGGGTGGTACTTGATGCAAACTGGGGC 2761755 33 100.0 35 AAACTGGGGC ................................. ATCGTGACTGCGTGTATGTGCAGACCAAGACGGGC 2761823 33 100.0 34 CAAGACGGGC ................................. TGATAACGCCTAGACTTACACCGTAGGCGCGCAA 2761890 33 100.0 33 AGGCGCGCAA ................................. TTCTTTGGTGAATTGTATCGGATAGGTGCATCA 2761956 33 100.0 35 AGGTGCATCA ................................. TTGGACTCACGGAAAAACACCGCAAACATCTGAAA 2762024 33 100.0 34 ACATCTGAAA ................................. GGGCATCGGGCAATGGATGATGCATGGAGCCATA 2762091 33 100.0 34 TGGAGCCATA ................................. GATGGCGTACTGGCTGTCAGAACTTGCGCTTAGT 2762158 33 100.0 36 TGCGCTTAGT ................................. GGCGTTAGGGTCTGGCGTGCTCCGTGGCGATGAGTT 2762227 33 100.0 33 GCGATGAGTT ................................. CATATAAGACGCCCTGGAATTCTGCGCCGACAG 2762293 33 100.0 36 GCGCCGACAG ................................. GACATGGCTATTCTGAAGAACTGCGGCATCTCCAAG 2762362 33 100.0 34 CATCTCCAAG ................................. CGGACAGATGGGCGGTAAGATGCTCGGAGGCGGA 2762429 33 100.0 34 CGGAGGCGGA ................................. GGAGATCGCACAGGCAATAGCTGACGGAAACCTT 2762496 33 100.0 35 CGGAAACCTT ................................. CGATCAGACAAACGTGACGATCTCCGTCGATCTCG 2762564 33 100.0 35 GTCGATCTCG ................................. AAAACAAACTCATGTTACGGTCGATTATGTACATG 2762632 33 100.0 34 TATGTACATG ................................. AAACGGGCGTAGCTTGTCACGTATGACGCTATTT 2762699 33 100.0 36 GACGCTATTT ................................. TTTTGCGGCGGCAAACTGGGATGAATACCTCTGCAT 2762768 33 100.0 33 ACCTCTGCAT ................................. TGTCAAAGACGGAGTAACCAACTTGGACAACAT 2762834 33 100.0 36 TGGACAACAT ................................. CAGACACGGTAAATCTTGCCAGCACCTATAACTTCT 2762903 33 100.0 33 TATAACTTCT ................................. GGCGTTTGGAGTTATCAAAGAGATAATTCAATC 2762969 33 100.0 34 TAATTCAATC ................................. GACAACGCCACAGGATAACGACGAGGAGCAGGTT 2763036 33 100.0 GGAGCAGGTT ................................. TCTTGCAAGC ========== ====== ====== ====== ========== ================================= 55 33 34 ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.60,-6.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [45.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [622,1174] Score: 0/0.18 # # Final direction: R [0.37,5.55 Confidence: HIGH] >NC_015978 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 838201 35 100.0 31 NNNNNNNNNN ................................... TCGTCAAAGTAAATTGTGGGCCAATCCACTG 838267 35 100.0 31 NNNNNNNNNN ................................... AAAGGGCATAGCCGACTCTTGCAGAACCACG 838333 35 100.0 1 NNNNNNNNNN ................................... NNNNNNNNNN ========== ====== ====== ====== ========== =================================== 3 35 31 CTCTTAATCTCATTAGAATGACGTACTTCTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-1.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [86.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [316,14] Score: 0.18/0.18 # # Final direction: F [0.45,0.37 Confidence: LOW] >NC_015979 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 28011 28 100.0 34 NNNNNNNNNN ......T..................... CACGGCACACTCGTATTCTGGATAGGCTTTTTTG 28073 28 100.0 34 NNNNNNNNNN ............................ TGGAATTGACGGCTACCATGCTTCTGCCGACATG 28135 28 100.0 33 NNNNNNNNNN ............................ CGTCCCACGCAAGTCAGTCGCAAATTGTACACG 28196 28 100.0 34 NNNNNNNNNN ............................ TCAAGTCTTGCGAATCATTCAATCCTTCGCCTTG 28258 28 100.0 33 NNNNNNNNNN ............T............... TTTCTTCATGTTTCTGCTCGGCTGTGGCTCTAA 28319 28 100.0 33 NNNNNNNNNN ...........A................ TATCATGGCGATGAATTTGAAACTCAAAAATTA 28380 28 100.0 33 NNNNNNNNNN ............................ TATCTTTTTTTCGTGTTCAAAAAATTCCTTTCC 28441 28 100.0 34 NNNNNNNNNN ............................ TTAACAGTTCTCATGGTATTTTGAGATATACATA 28503 28 100.0 34 NNNNNNNNNN ............................ TACTACTTGAAATGACGTACCTACAAAACCGATG 28565 28 100.0 34 NNNNNNNNNN ............................ TAAAATTGAAAAACTTGAAGAAGCACTTGTTAGA 28627 28 100.0 33 NNNNNNNNNN ............................ TACTCATAAAACAAGCCTACAAGTTGAATTTGA 28688 28 100.0 34 NNNNNNNNNN ............................ TATAAATGTAATGAAAAGTGAGAGGGGGCTTAAA 28750 28 100.0 34 NNNNNNNNNN ............................ TAAATTTTTCAGTTCACGCTTTTGGCTTTCATCA 28812 28 100.0 34 NNNNNNNNNN ............................ TAGCAAGTACAGCATTATCTTATATCGTTGGTTA 28874 28 100.0 1 NNNNNNNNNN ........................GATG NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 15 28 33 GTATTCCCCACGCATGTGGGGGTGATCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-10.90] Score: 0/0.37 # Array degeneracy analysis suggestion: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [138,77] Score: 0/0.18 # # Final direction: R [0.41,0.64 Confidence: LOW] >NC_016002 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 704586 29 100.0 32 NNNNNNNNNN ............................. TCGCTGCCGCGGACTACATCGTCACGGCTGGC 704647 29 100.0 32 NNNNNNNNNN ............................. TCGCGGTCCTGGTGCGCGGTCCACGTGCTGGC 704708 29 100.0 32 NNNNNNNNNN ............................. GTGAAGAGCGACGACATCGCCATCGTGGACTA 704769 29 100.0 32 NNNNNNNNNN ............................. TAGCGCGTCATCGTCTAACCGCTCGCCCTTGT 704830 29 100.0 32 NNNNNNNNNN ............................. CCCCCGCCGCAGCGAATCCCGTCCCTCACCTA 704891 29 100.0 32 NNNNNNNNNN ............................. GACGCGCCGCAGTACGCCGGACCGGCAGGGCA 704952 29 100.0 32 NNNNNNNNNN ............................. TCATTTCCGAACCCACCACGACCGCCCAGTCC 705013 29 100.0 32 NNNNNNNNNN ............................. CCAATGGCAAAAGTTGCATAGGGCGACAGCAC 705074 29 100.0 32 NNNNNNNNNN ............................. ACCGACGCCATGATGCGCAAGTTTGCCGAGCA 705135 29 100.0 32 NNNNNNNNNN ............................. GCACCACCCGCCGCGCCCGGCGTCGCCACCTC 705196 29 100.0 32 NNNNNNNNNN ............................. CCGATCGGCTTGCTATAGAACCGGCTGAACTT 705257 29 100.0 32 NNNNNNNNNN ............................. GTGTGCCGGGTCTGGTACTGATTTCGATAGCG 705318 29 100.0 32 NNNNNNNNNN ............................. CTCTATGATCTGATGGCACGGCTCCGTGAGGC 705379 29 100.0 32 NNNNNNNNNN ............................. GCTGCCCCAGTTGGTGCCATCGGCTGTCCCCT 705440 29 100.0 32 NNNNNNNNNN ............................. CTGATCCAGTACCCGGTATCGTCGGCCGCCTC 705501 29 100.0 32 NNNNNNNNNN ............................. TCGTTGGCCGACGTGGCGGCATCGACGAGCGG 705562 29 100.0 32 NNNNNNNNNN ............................. CGTTCCCTTGATAAAGAGGTTGATTGGGCGGT 705623 29 100.0 32 NNNNNNNNNN ............................. TTCTTCGAGCAGCAACGTTTGGTAGAGCGATG 705684 29 100.0 32 NNNNNNNNNN ............................. ACTTATCCACAGGGTTATCAACAGGATGCCCA 705745 29 100.0 32 NNNNNNNNNN ............................. TTGGACGAGATACAGCGGGCGCTCGCCAATAA 705806 29 100.0 32 NNNNNNNNNN ............................. ACACCACGTGTTGTTTGGCGGACTGGAGCGGC 705867 29 100.0 32 NNNNNNNNNN ............................. CACTGCGTCTACAGCATGGACTCGCCGCATGA 705928 29 100.0 32 NNNNNNNNNN ............................. ACGTGGCGGAACACGCAGGTGGCCTTCTCGCC 705989 29 100.0 32 NNNNNNNNNN ............................. TCGCGTTGTTCGGTCGCCAGCAGAATCCGATC 706050 29 100.0 32 NNNNNNNNNN ............................. TTCACGTTCCACTTCCGAGCCGCGTTGTTGAT 706111 29 100.0 32 NNNNNNNNNN ............................. TGGTTCGGCCTGATCGACAAAGACCAGACCCT 706172 29 100.0 32 NNNNNNNNNN ............................. ATTTGTGTTTCCGTCTATCGAACGTATGTCTC 706233 29 100.0 32 NNNNNNNNNN ............................. CAGTACGACAGCACCGGGGCCAAGATCGCGGC 706294 29 100.0 32 NNNNNNNNNN ............................. GACGCCGCCAAAGCCACCGGCGTGAAGTTCTT 706355 29 100.0 32 NNNNNNNNNN ............................. GCGGCGGCGACGTGATCAACAAGGACGCCGAG 706416 29 100.0 32 NNNNNNNNNN ............................. TAGCGGCCCACCTCGCACAAGGCCCACGTGGT 706477 29 100.0 32 NNNNNNNNNN ............................. TTCAGCCGGCCCTCGCTGTCGAACGTGGGCTT 706538 29 100.0 32 NNNNNNNNNN ............................. GCGCTGGAACCGTCCGCCGGGCATGGCGCCAT 706599 29 100.0 32 NNNNNNNNNN ............................. TTGTCGGCGGTCGGGCGGGATGAGTCGTATCA 706660 29 100.0 32 NNNNNNNNNN ............................. TCACCCAACGACGGGACGGGCATCGCAAGGGG 706721 29 100.0 32 NNNNNNNNNN ............................. CGGGCACAAATGATGCTGTTCCGATGACACCG 706782 29 100.0 32 NNNNNNNNNN ............................. CCAGAGCAGCATTCCAGGCCTGGTCGGAGTCA 706843 29 100.0 32 NNNNNNNNNN ............................. GCGACAGACAGCAGAAAGCCCCCAGTGATCGG 706904 29 100.0 32 NNNNNNNNNN ............................. TTTGTCCGCCATCCTGGCGCTCGCGGGAGGAG 706965 29 100.0 32 NNNNNNNNNN ............................. GCGCCGTGGACAATTGAGCCGTCCACTCCCCA 707026 29 100.0 32 NNNNNNNNNN ............................. TTGGCCATGCAGCGCGGCATGTACGGCGCGGT 707087 29 100.0 32 NNNNNNNNNN ............................. TCGCGCTGCCGAACAGCTCGAAAATCTACTAC 707148 29 100.0 32 NNNNNNNNNN ............................. CCCAACAGGTGCAGGCGCTGGCCGATCAAGCC 707209 29 100.0 32 NNNNNNNNNN ............................C CCCGCACTCGCAACGGTAAAAACCGCGAATCT 707270 29 100.0 32 NNNNNNNNNN ............................. TATACGGGTCAATATTTCTATGGCTGGTCGTG 707331 29 100.0 32 NNNNNNNNNN ............................. ACTTGGCAGCCATGCATGGCCACTATGGCTAT 707392 29 100.0 32 NNNNNNNNNN ............................. ATCGTGCGCGAAGGGCTGCAGGGTGGCTGGAT 707453 29 100.0 32 NNNNNNNNNN ............................. CCGCCGCCCGGCTTCGGCGCGGTGCGCTGACG 707514 29 100.0 32 NNNNNNNNNN ............................. ACGACGTCGGCGAGCTGATCAAGCGCTGGCAG 707575 29 100.0 32 NNNNNNNNNN ............................. CCATCTGAGGCCAGCTTGTGGACCCTATTCGC 707636 29 100.0 32 NNNNNNNNNN ............................. TAACATCGAGGTAACTTAGAGGTAATCAGGTT 707697 29 100.0 32 NNNNNNNNNN ............................. GAGGAGGCCCGCCAGAAGCGCCTGACGCTGGA 707758 29 100.0 32 NNNNNNNNNN ............................. CGGTATGGCGATCGACGCGCACGACCCCCAAT 707819 29 100.0 32 NNNNNNNNNN ............................C GTATGACACGCAAAAACTCTTTGGGGCTGGTG 707880 29 100.0 32 NNNNNNNNNN ............................. TGGTGCAGCAACTCGGCAAGGTCGCTGGTGTT 707941 29 100.0 32 NNNNNNNNNN ............................. CCCTATCGGGTCGCCCTCGGCCTCCTCAAGTG 708002 29 100.0 32 NNNNNNNNNN ............................. CCGTAGGCGTCGATTTCGTATAGCTTTAGAAC 708063 29 100.0 32 NNNNNNNNNN ............................. TTCCAGCCCGATGCGCACTACAAGCAGCGGCT 708124 29 100.0 32 NNNNNNNNNN ............................. ACAACGAAATCCCCGCCCAAGTTGTCGACCAG 708185 29 100.0 32 NNNNNNNNNN ............................. GTAAGTGCGCAGTCCCTAATTAAATTATTGCC 708246 29 100.0 32 NNNNNNNNNN ............................. TGGAAGCGAAACATGCAAGAGGCTCAGCAAAA 708307 29 100.0 32 NNNNNNNNNN ............................. CTTGACAAGACCTCAGGCGTACAGGGCGCGTA 708368 29 100.0 33 NNNNNNNNNN ............................. TAGCCAACGGCGGCCATCAGCATCTTGGTGTAG 708430 29 100.0 32 NNNNNNNNNN ............................. AACAGGACGGGCAACGGTCATGCGACTAGGCC 708491 29 100.0 32 NNNNNNNNNN ............................. CCGTTCGCCATCCTGTCAGGGATCTGCGCCGT 708552 29 100.0 32 NNNNNNNNNN ............................. GGCGAGACGGACCAGCGCTTTGCCGAGCAGGC 708613 29 100.0 32 NNNNNNNNNN ............................. ATGAAGCGCTTCCAGCCACGTGAGGAAGTACG 708674 29 100.0 1 NNNNNNNNNN A.....................GA.G.GT NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 68 29 32 GTGATCCCCGCGCCAGCGGGGATGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,3] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-13.40,-12.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [61.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [108,302] Score: 0.18/0.18 # # Final direction: F [1.92,0.18 Confidence: HIGH] >NC_016001 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1899989 36 100.0 30 NNNNNNNNNN .................................... GATGTTTGTAGAATAGAGTCAAACCCTTAT 1900055 36 100.0 30 NNNNNNNNNN .................................... TTCTTAAAAAGAAAAAATAATGATTAGAAA 1900121 36 100.0 30 NNNNNNNNNN .................................... TAGTTCCGTTTTCATATTCTTTTATAAACT 1900187 36 100.0 30 NNNNNNNNNN .................................... ATTGAAGGGTTTTCATTAACAACTGAAAAA 1900253 36 100.0 30 NNNNNNNNNN .................................... CTGTATTTGCCTGAAATGGCATTTGGAAAT 1900319 36 100.0 30 NNNNNNNNNN .................................... AATGGCTATGAAGAAACTAAGATAGCCAAA 1900385 36 100.0 30 NNNNNNNNNN .................................... TGCCTGTGGTGTGTTATTATTTGTCGGAAA 1900451 36 100.0 30 NNNNNNNNNN .................................... GCTAATACAGTTGATACAGCCAAAAGATTT 1900517 36 100.0 30 NNNNNNNNNN .................................... TATTTGAACTCCATTTTGGAAACTTCAAGC 1900583 36 100.0 30 NNNNNNNNNN .................................... GTAGGCCAAAACAATTGCACCAATAAAACG 1900649 36 100.0 30 NNNNNNNNNN .................................... GCTTGTAATCGCTTGAATTAAAGCGTTAAA 1900715 36 100.0 30 NNNNNNNNNN .................................... ATTCTCACAATTTGTGAGTTTTTCTTTGGT 1900781 36 100.0 30 NNNNNNNNNN .................................... ATTTAACGAACTTAATGTTTTAGCACAATC 1900847 36 100.0 30 NNNNNNNNNN .................................... GGGGCAAATATACAAACACTTGCAAGTATT 1900913 36 100.0 29 NNNNNNNNNN .................................... ACCCCAACGTATCGGCAGCTGCTGGTATG 1900978 36 100.0 30 NNNNNNNNNN .................................... TATACATAATAACATCGAAAATCATGGCGA 1901044 36 100.0 30 NNNNNNNNNN .................................... CCAAGTGCCGCCCACACCATCGGGCGTAAT 1901110 36 100.0 30 NNNNNNNNNN .................................... TCGTCCTTAATTTCATTTTCTTTTTGCTTG 1901176 36 100.0 29 NNNNNNNNNN .................................... TATGGCTCCTGCTGGCACTTTTATTTGAG 1901241 36 100.0 30 NNNNNNNNNN .................................... GGATGCGTTGGATATTAATTTAATACTAGG 1901307 36 100.0 30 NNNNNNNNNN .................................... ACGCCAGCTGCTACGGTACATGTTGCCCCA 1901373 36 100.0 30 NNNNNNNNNN .................................... GTAGGCCAAAACAATTGCACCAATAAAACG 1901439 36 100.0 30 NNNNNNNNNN .................................... GCTTGTAATCGCTTGAATTAAAGCGTTAAA 1901505 36 100.0 30 NNNNNNNNNN .................................... GGGGCAAATATACAAACACTTGCAAGTATT 1901571 36 100.0 29 NNNNNNNNNN .................................... ACCCCAACGTATCGGCAGCTGCTGGCATG 1901636 36 100.0 30 NNNNNNNNNN .................................... CCAACGAGCTACCAGACTACTCTAACCCGC 1901702 36 100.0 30 NNNNNNNNNN ..................T................. ACTAAAAATGTAATTATTAAAAAATATGTT 1901768 36 100.0 1 NNNNNNNNNN .............................TA.ATT. NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 28 36 29 CATATCGTGTTTTCTAATCTTTAATCAAACCACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:69.44%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [108,521] Score: 0.18/0.18 # # Final direction: R [0.41,0.55 Confidence: LOW] >NC_016001 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2549401 36 100.0 30 CCATTTTATT .................................... AGAAGGAACTCAATACAAAAAAATACATAA 2549467 36 100.0 30 AAATACATAA .................................... TAATTTCATACGCAAAATAACCGCCTTCAT 2549533 36 100.0 30 CCGCCTTCAT .................................... AGTTTTGGTAGATAATATCTTTCTGTTTTT 2549599 36 100.0 30 TTCTGTTTTT .................................... GGTGAGGAAGGAACGATTTCATTCATAATT 2549665 36 100.0 30 ATTCATAATT .................................... CAATAGTTGATCCTCGTCATCAGCCTTGTA 2549731 36 100.0 29 CAGCCTTGTA .................................... TCTGCACCTACAACTTTTACTAGTTGCCT 2549796 36 97.2 29 CTAGTTGCCT ..............................A..... TACCTAGTGCATCGGTGTCAGTATTTTCA 2549861 36 100.0 AGTATTTTCA .................................... CTCTAGCTCT ========== ====== ====== ====== ========== ==================================== 8 36 29 GTTGTAACTGCCCTTATTTTGAAGGGTAAACACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [65.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [2,2] Score: 0/0.18 # # Final direction: F [1.05,0 Confidence: HIGH] >NC_016001 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2550500 36 100.0 30 GTGTTTTAAC .................................... ACCAATCATTTTTACTTGCCAAACAACTCC 2550566 36 100.0 29 AAACAACTCC .................................... CCAAGCCAGCAATTTGTAAATAAAATACT 2550631 36 97.2 30 ATAAAATACT ..............................A..... TTACAAACGTCGATCATGTAAGATTTCTGA 2550697 36 94.4 30 AGATTTCTGA ............T..........A............ TGTACGGAAAAGACCAATACCCTGTGCACC 2550763 36 97.2 30 CCTGTGCACC .........................T.......... AGGTTCTGCCAAAGTAAGAGCAGCTATAAT 2550829 36 100.0 29 CAGCTATAAT .................................... GTTGTAAAATACCATTTACTGTAGCAAAT 2550894 36 97.2 30 TGTAGCAAAT ..........T......................... TAGTGCCATCACAATCAACCCCAAAGCTAG 2550960 36 100.0 CCAAAGCTAG .................................... TAGTGCCATC ========== ====== ====== ====== ========== ==================================== 8 36 29 GTTGTAACTGCCCTTATTTTGAAGGGTAAACACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [2,2] Score: 0/0.18 # # Final direction: F [1.05,0 Confidence: HIGH] >NC_016001 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3018429 36 100.0 26 NNNNNNNNNN .................................... ACGATTCCGAAGAGGCAAAACAATAT 3018491 36 100.0 28 NNNNNNNNNN .................................... AATTCGTGGTTGATACTAAACCTGCGAG 3018555 36 100.0 28 NNNNNNNNNN .................................... CCAAAAAGGAGAAACCGCTTATGTCTTT 3018619 36 100.0 26 NNNNNNNNNN .................................... TGGCAAACCGTACGTGTCCACAAATT 3018681 36 100.0 26 NNNNNNNNNN .................................... AGGTCTATAATTTCATTCAGTAGTTT 3018743 36 100.0 27 NNNNNNNNNN .................................... TTATATCAGGTAGATCATTATTTGCAC 3018806 36 100.0 27 NNNNNNNNNN .................................... ATGGTAGCCAAATTGCTATTAATGGTT 3018869 36 100.0 26 NNNNNNNNNN .................................... TAATAGCAATATGTGGGATTATGAAT 3018931 36 100.0 27 NNNNNNNNNN .................................... ACAGGTGTTAAAATCACTGTATAATTT 3018994 36 100.0 27 NNNNNNNNNN .................................... AGCAAATGCCTTTTTATCAATAATCAT 3019057 36 100.0 26 NNNNNNNNNN .................................... AACCCAACCTGTTTCTTTCATTTCAA 3019119 36 100.0 27 NNNNNNNNNN .................................... TACCCAGTAGTCTCCCACTAAATCATA 3019182 36 100.0 27 NNNNNNNNNN .................................... ATTTTTAAGTCCACAAAATCAGAGGCT 3019245 36 100.0 28 NNNNNNNNNN .................................... TTCACAACTTTGCCACATTCTAGTGCAG 3019309 36 100.0 28 NNNNNNNNNN .................................... TTGCCGTCATTAAACCTTATTCCAGGTA 3019373 36 100.0 29 NNNNNNNNNN .................................... TTTATTTTAAATTCATGGTTCAAATGATA 3019438 36 100.0 28 NNNNNNNNNN .................................... TCGCATCGTATAGTTTTATTTCATTCAT 3019502 36 100.0 32 NNNNNNNNNN .................................... GTAATTGCGGTATTTTTGTATGCAATTTTTAA 3019570 36 100.0 29 NNNNNNNNNN .................................... AGTGGATGCAAAAAATAAAAAACAAATAG 3019635 36 100.0 28 NNNNNNNNNN .................................... GGTGGTGCAAACATTTATGAAGTAGGCA 3019699 36 100.0 27 NNNNNNNNNN .................................... GATATACGTAATTGTAATGACATCGAT 3019762 36 100.0 29 NNNNNNNNNN .................................... TAGATATACGGTTACGGTTTGTTTTTTGT 3019827 36 100.0 27 NNNNNNNNNN .................................... ATACTCGCAAATCTTAGTCGTTGGAGT 3019890 36 100.0 31 NNNNNNNNNN .................................... GATTGCGTGAGCGTGGGCGAAGTACTCAATG 3019957 36 100.0 27 NNNNNNNNNN .................................... TGTACAGCATATTGAAGATAGTAGAAC 3020020 36 100.0 27 NNNNNNNNNN .................................... ACCCTCAGCTTTGTTTCGCTGTCGGCT 3020083 36 100.0 26 NNNNNNNNNN .................................... TAAAACAAATCTGTGTATTTTAAAAA 3020145 36 100.0 28 NNNNNNNNNN .................................... TCCTGAATACTTTTCTGTTTTAAAGAAA 3020209 36 100.0 29 NNNNNNNNNN .................................... ACGAGAATAAAGCATTCTCATGGATTCAA 3020274 36 100.0 27 NNNNNNNNNN ...........................T........ ATCTTTAACACCAGCGCAGAAAAACAT 3020337 36 100.0 29 NNNNNNNNNN .................................... AAAGAAGTATTTACGGTCAATACTGTACA 3020402 36 100.0 29 NNNNNNNNNN .................................... AGGGTTGTAATTCAATACCATAACCATTT 3020467 36 100.0 27 NNNNNNNNNN .................................... TGTAAATTATTACCAACCGCTATCCAT 3020530 36 100.0 28 NNNNNNNNNN .................................... TAACGATATCACCTCTACCGAATTGGTG 3020594 36 100.0 28 NNNNNNNNNN .................................... GTAAACGACCGCAATCGTCTAAGGCTTC 3020658 36 100.0 29 NNNNNNNNNN .................................... ATTTAATGGGTTAAAAGCGTCTTTTGCTT 3020723 36 100.0 27 NNNNNNNNNN .................................... TTCTCGTGAAAAAAAGAAAGATGCCAC 3020786 36 100.0 29 NNNNNNNNNN ...................................A GAAAATGCCACAGATGCACAGATGTTTTT 3020851 36 100.0 1 NNNNNNNNNN T........TCGAA.TT.TAC.A.GGGG....G.T. NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 39 36 27 GTTTAAAACCACTTTAAAATTTCTACTATTGTAGAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:77.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [456,220] Score: 0.18/0.18 # # Final direction: F [0.86,0 Confidence: HIGH] >NC_016001 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2551249 36 100.0 30 TTGTGCTACT .................................... TTTTCTTCTCGTATTAATTGAATTTCTTCA 2551315 36 100.0 30 AATTTCTTCA .................................... TTTGGAACGTGAATATTACGTTTAAATGTG 2551381 36 97.2 29 TTTAAATGTG ..............................A..... CCATTATTATTGATATATACAATGATACT 2551446 36 100.0 CAATGATACT .................................... CGTTCCCCAAA ========== ====== ====== ====== ========== ==================================== 4 36 29 GTTGTAACTGCCCTTATTTTGAAGGGTAAACACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [2,2] Score: 0/0.18 # # Final direction: F [1.05,0 Confidence: HIGH] >NC_016012 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 670558 32 100.0 35 AAATTTAACG ................................ CCCCAATTATAACACCTGCCGTAATACCTATTACT 670625 32 100.0 34 ACCTATTACT ................................ TCTAATGTAATTATAAACATCTTTAGTGCTAACT 670691 32 100.0 35 AGTGCTAACT ................................ CATATACGATATCCGGAAGAAAATTGCCTGAATAG 670758 32 100.0 33 GCCTGAATAG ................................ AATAAGTAGTGTTGCATCTAGCATGGGATACTC 670823 32 100.0 35 TGGGATACTC ................................ TGAAAATAATTTTAAGGAATTGAAAGTAGGGGGAG 670890 32 100.0 33 GTAGGGGGAG ................................ CATCTTATAATCTGCTATTTGCTTAGCTACATT 670955 32 100.0 35 TAGCTACATT ................................ ATCATCGTTTATATTTGTTGATATTACCCCACTTG 671022 32 100.0 33 ACCCCACTTG ................................ CCATGCCCTTGTGGTATTAGTTTTAGACTTGAG 671087 32 100.0 33 TAGACTTGAG ................................ AACCTTCACTTTTGTGTTTGTAATAAAACTTAT 671152 32 100.0 33 TAAAACTTAT ................................ CGAAATTTACTGTTAAAACAAATGTTGGCAAAA 671217 32 100.0 33 GTTGGCAAAA ................................ TACGAGCTTGGCTCTCTAGTTTTTTCTGTTCTT 671282 32 100.0 33 TTCTGTTCTT ................................ TATATCAGTTGGTGGAGATGGAGAGTCTGGAGG 671347 32 100.0 33 AGTCTGGAGG ................................ TTTTGATAGTTTATTAACTACTTCAAAGTACTT 671412 32 100.0 35 CAAAGTACTT ................................ ATGTGGAGGGTTGGAAAGAGGTTTTAGAGTTTATT 671479 32 100.0 33 AGAGTTTATT ................................ TTTCATTTTTTTACTTTTACTTTTAAAATATAA 671544 32 100.0 35 TAAAATATAA ................................ GTTAGCTCCATATTGGGACATTCCAACACCATGAC 671611 32 100.0 33 ACACCATGAC ................................ ACTGGATCTACCTTAGATACAACCACAACCAAA 671676 32 100.0 33 CACAACCAAA ................................ CTTCATAAAATACACAATCTTCAATATAAATAT 671741 32 100.0 35 ATATAAATAT ................................ TCTAATATCATTTTTAACCTTCCTTTTTTAATTGA 671808 32 100.0 34 TTTTAATTGA ................................ ACGTGCATGATGAGATAATACTTGAAACGGATAA 671874 32 100.0 33 AAACGGATAA ................................ AAAGAGTATGACGGCGTATTAAGTATACGTTTA 671939 32 100.0 33 TATACGTTTA ................................ CAGAGTGTCCTGGACAAATTTCAATATTTGATC 672004 32 96.9 ATATTTGATC ..............................G. TGGATTTT ========== ====== ====== ====== ========== ================================ 23 32 33 GTCGCACCTCACGCAGGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [7,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.70,-8.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [81.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [172,11] Score: 0.18/0.18 # # Final direction: F [5.36,0.37 Confidence: HIGH] >NC_016011 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 451361 29 100.0 35 AATGAAGCGG ............................. CTGTATAAATTTCATCCGATGAATTTCGACATCGT 451425 29 100.0 36 TCGACATCGT ............................. AAATCGTTGTGAGATAATTATTTCAGATTGAGAATT 451490 29 100.0 36 ATTGAGAATT ............................. GTGATAGAAATGTGAGGACTATCCGTTGCCACGCCA 451555 29 96.6 TGCCACGCCA ................A............ ACATACAAAG ========== ====== ====== ====== ========== ============================= 4 29 35 GTTTTAATTACTTATTGTGAAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:82.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [58.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [256,144] Score: 0/0.18 # # Final direction: F [0.78,0.27 Confidence: MEDIUM] >NC_016011 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 469832 29 100.0 36 AAGTTGACGG ............................. TCAATTCCCTTGTTCGCTATAAACGGATGGAATAAA 469897 29 100.0 37 ATGGAATAAA ............................. AGCTTCCTTTTTTTAAGAAATTAGCAACATTTTCAGC 469963 29 100.0 34 CATTTTCAGC ............................. GGAGGAACAGCGACCGGTTTCGGCTCGGATATTA 470026 29 100.0 36 TCGGATATTA ............................. TAGCTTTGCATTTTTTCAGTGATAGAAGTCGCATAT 470091 29 100.0 35 AGTCGCATAT ............................. AACGATATTGGTACAAAAGTAAATTTATCGTTTTT 470155 29 100.0 36 TATCGTTTTT ............................. AATATCATAGATGCGACTACAACGCCGTCTGACACG 470220 29 100.0 37 GTCTGACACG ............................. GTCAAATTGCTCATTGAAATAAAGCGGGTTTGTGATT 470286 29 96.6 GTTTGTGATT ..................A.......... ATTTTTTGTG ========== ====== ====== ====== ========== ============================= 8 29 35 GTTTTAATTACTTATTATGAAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:86.21%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [200,198] Score: 0/0.18 # # Final direction: F [0.41,0.27 Confidence: LOW] >NC_016023 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2117433 30 100.0 39 NNNNNNNNNN .............................. TAGGTTACCCGCTGTCACAAACCGGATCCGGAGACAAGC 2117502 30 100.0 36 NNNNNNNNNN .............................. ATCGCGTCCGTGAGTTTGCCCCAGTATGCCGGGTTC 2117568 30 100.0 36 NNNNNNNNNN .............................. AAGTGATGATCGCGACACATCCAGATGCCGATCATA 2117634 30 100.0 36 NNNNNNNNNN .............................. AATGAGAAGATGGGAAGTACTTGCAATGCTAAACGG 2117700 30 100.0 37 NNNNNNNNNN .............................. CGGTGTCGCCTTCCACGTCCAGCGCTAAAAATTTTGC 2117767 30 100.0 37 NNNNNNNNNN .............................. TACCTCCCGGATTCAAATCCCTTTTTCTCGATCGCTG 2117834 30 100.0 36 NNNNNNNNNN .............................. CGAGTGTAAACAGTGTAGACAGTACTTCCGTCTGCT 2117900 30 100.0 35 NNNNNNNNNN .............................. TCTGACGGTCCGAGGGCTGCCCAACGGCACAAAGT 2117965 30 100.0 39 NNNNNNNNNN .............................. GGGCAAAAATTTCACGAAACCGCTTTTGCATATTTCCCC 2118034 30 100.0 39 NNNNNNNNNN .............................. GATTGTCTTCCAGAACCGCGTTTTCCCTCAATGTAGCCC 2118103 30 100.0 36 NNNNNNNNNN .............................. CCTGATACTGGCGCTGTATACCAAATAGTTTCGCCT 2118169 30 100.0 35 NNNNNNNNNN .............................. TCATTGAATATGATAAAATAAATGAATTGGATGTC 2118234 30 100.0 37 NNNNNNNNNN .............................. AAGTTGTTGGTATGCGTGACGGCGATGATGTAACGGG 2118301 30 100.0 37 NNNNNNNNNN .............................. ACACTAAACCGGTTAGCACGTCTACCACCAGTACAGT 2118368 30 100.0 38 NNNNNNNNNN .............................. CACCATGCTTTCATGACCAAAAGTTTTGCGGATGAACC 2118436 30 100.0 39 NNNNNNNNNN .............................. ACAGCATGACAGCTATCAATTCGCAAGCGATCAAAGAGC 2118505 30 100.0 35 NNNNNNNNNN .............................. AGCGACAACGAACACAATAAGTCTGTATCATATCC 2118570 30 100.0 36 NNNNNNNNNN .............................. ATTTTTAAACAGATCTGCTATCCCCGTGACCTGCTT 2118636 30 100.0 36 NNNNNNNNNN .............................. TTCTGCTTCAGTATCTACATATGTACCAATGTATAA 2118702 30 100.0 36 NNNNNNNNNN .............................. GCGTCTTGCTTTCGTTTCCATTCCACCATATTCGCG 2118768 30 100.0 35 NNNNNNNNNN .............................. TTTTGGGGTGTGAGGCTGGCTGGGGGTGTGGGGGC 2118833 30 100.0 37 NNNNNNNNNN .............................. GCGGTATGATGGATGGAGCAAGCCGACCCTCGGAGCT 2118900 30 100.0 38 NNNNNNNNNN .............................. TTTGACGGACTCGTCGCAATGGATCCGCCTTTTTTCGT 2118968 30 100.0 37 NNNNNNNNNN .............................. ACCAGGAACAGCTTGCTTTTGATTTGAATGTGTCCCC 2119035 30 100.0 35 NNNNNNNNNN .............................. CAAGTATTTAAAAATCCACAACTGAATACAGAACG 2119100 30 100.0 35 NNNNNNNNNN .G............................ ATTCTTCGATGTCCTCCCTTAGCTGGTCCATCCCA 2119165 30 100.0 35 NNNNNNNNNN .............................. CGGATATTGTAAAGGATGAACACACATATCATAAC 2119230 30 100.0 36 NNNNNNNNNN .............................. TGAGGAGGGGGCTGATATGGTGAACGTTTCCTTTGA 2119296 30 100.0 36 NNNNNNNNNN .............................. AAATACGGATAGGGTAACAAAAAAGGCGACCGCAAT 2119362 30 100.0 36 NNNNNNNNNN .............................. CGTAATCCCCGACTTTCAGCTTCGGCGCCGTGTATT 2119428 30 100.0 38 NNNNNNNNNN .............................. ATAGATTATGGTGTACCGGATGTACCGTTGGTAAAGGT 2119496 30 100.0 37 NNNNNNNNNN .............................. CGGAAAGCCGTTAAAATTCTGCAAACTGTGCCGCCAC 2119563 30 100.0 37 NNNNNNNNNN .............................. CTGTTCTTTTGGACTCTGTATATATTGGCCATGCTTT 2119630 30 100.0 35 NNNNNNNNNN .............................. GCCGGTATTTCGTTTGATCGCACCGGATATGCAAC 2119695 30 100.0 36 NNNNNNNNNN .............................. TCTGGCCCGAAAGCAATCTTCATTTTGACCACTTCT 2119761 30 100.0 36 NNNNNNNNNN .............................. TACAAAATGGAGGTAAATGAATATGGCAAGTATACA 2119827 30 100.0 38 NNNNNNNNNN .............................. ATCCGAGCCGTGATAAAATTGATACTCCCTTGCCAGTG 2119895 30 100.0 35 NNNNNNNNNN .............................. TAACAATTGAGCCGTTTGGTATTGATCTCGAACTA 2119960 30 100.0 37 NNNNNNNNNN .............................. AACGTAAATATCGCGCAGCTGGCGCTCAACAAGGCGC 2120027 30 100.0 36 NNNNNNNNNN .............................. TCGGTAGTGGTAAAAGTTATCACGCTGTCAGAGACG 2120093 30 100.0 37 NNNNNNNNNN .............................. TCGTATTTCACCTCGACATTAAACCGCGCTGGCTTTG 2120160 30 100.0 35 NNNNNNNNNN .............................A AAAATAAGCATCGCAGTACATGGCGAGATGGCCGA 2120225 30 100.0 54 NNNNNNNNNN .............................. TATAGCTGATGTCCGCATATAATTCATAGCTGTCGTCCGTTTGTATTTTACCTA 2120309 30 100.0 36 NNNNNNNNNN T............................. AGCAGTGTAAACAAAAAAAAAGAAGGAGCTGAAAAG 2120375 30 100.0 38 NNNNNNNNNN .............................. TTATTTCTGTAAACCGGCTTTCCATTTCTTCGTACACT 2120443 30 100.0 35 NNNNNNNNNN .............................. TCGAAAAAGCAAGCGCAGGGCGTGCATGATGTCAT 2120508 30 100.0 35 NNNNNNNNNN .............................. AGCGTAAATCAAAATATTATTTAATGATCGTGTAC 2120573 30 100.0 38 NNNNNNNNNN .............................. ACAAGGGGCGCGACGGCGGCGAAGGGGAGCAGTCAGAA 2120641 30 100.0 35 NNNNNNNNNN .............................. ATGCGTATGGCGTACGAAGCAGGAAAAGCTGGCGA 2120706 30 100.0 37 NNNNNNNNNN .............................. CTTACATTCTGCTTTCTAGTAACCCACATGAGATTGC 2120773 30 100.0 37 NNNNNNNNNN .............................. CTGTCTGTGCTGCTTGTGCTGCATCTGCAGCTGTAGC 2120840 30 100.0 36 NNNNNNNNNN .............................. CGGGCATTGTGCCAAGCGTTAATGCCGACCAGTCCA 2120906 30 100.0 36 NNNNNNNNNN .............................. TGCAACGCCCCATGCTTTTGTAGCTCCCGCGGCTAT 2120972 30 100.0 35 NNNNNNNNNN .............................. CGGTAATGTGTACGCCCTCTACGTGTGGCATGCGC 2121037 30 100.0 38 NNNNNNNNNN .............................. CACGTAAATACATTCATGCTATAATGAAATCAAGATAA 2121105 30 100.0 37 NNNNNNNNNN .............................. CATCTATGCTATCTATGGTATAATAGAAGCATAAGGA 2121172 30 100.0 36 NNNNNNNNNN .............................. GTTAGCTATGGCTTCTCTTTCCGCTTCCTCCTCCGT 2121238 30 100.0 37 NNNNNNNNNN .............................. GGCTTTGACAGGGACATAATTCCTTAGATCGCTTGTA 2121305 30 100.0 35 NNNNNNNNNN .............................. CGGGCATTGTGCCAAGCGTTAATGCCGACCAGTCC 2121370 30 100.0 35 NNNNNNNNNN .............................. GAATACGACTTCGCATGTACTGCGTTTTCCATCGC 2121435 30 100.0 35 NNNNNNNNNN .............................. CGCTTAAATATACGTACTCCGCCAAGTGACGCAGG 2121500 30 100.0 36 NNNNNNNNNN .............................. CAATACATGGGCATGCCTAAAGGGAAGTTCCCAGTC 2121566 30 100.0 36 NNNNNNNNNN .............................. CGGGACTGGTCCATTGGAGCATATAACCACAATTAT 2121632 30 100.0 37 NNNNNNNNNN .............................. AAAGGGGTATGGGCCTACAAGAAATCCGGGTGTCAAG 2121699 30 100.0 37 NNNNNNNNNN .............................. GTACGCCCGGTACGCATCCAAACCTATTGGGGTTTCC 2121766 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 66 30 36 GTTTGTATTTTACCTATGAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.00,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [65.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [710,281] Score: 0.18/0.18 # # Final direction: F [6.23,0 Confidence: HIGH] >NC_016023 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2120310 30 96.7 36 TTTTACCTAT -............................. AGCAGTGTAAACAAAAAAAAAGAAGGAGCTGAAAAG 2120376 30 100.0 38 AGCTGAAAAG .............................. TTATTTCTGTAAACCGGCTTTCCATTTCTTCGTACACT 2120444 30 100.0 35 TTCGTACACT .............................. TCGAAAAAGCAAGCGCAGGGCGTGCATGATGTCAT 2120509 30 100.0 35 ATGATGTCAT .............................. AGCGTAAATCAAAATATTATTTAATGATCGTGTAC 2120574 30 100.0 38 GATCGTGTAC .............................. ACAAGGGGCGCGACGGCGGCGAAGGGGAGCAGTCAGAA 2120642 30 100.0 35 GCAGTCAGAA .............................. ATGCGTATGGCGTACGAAGCAGGAAAAGCTGGCGA 2120707 30 100.0 37 AAGCTGGCGA .............................. CTTACATTCTGCTTTCTAGTAACCCACATGAGATTGC 2120774 30 100.0 37 ATGAGATTGC .............................. CTGTCTGTGCTGCTTGTGCTGCATCTGCAGCTGTAGC 2120841 30 100.0 36 CAGCTGTAGC .............................. CGGGCATTGTGCCAAGCGTTAATGCCGACCAGTCCA 2120907 30 100.0 36 GACCAGTCCA .............................. TGCAACGCCCCATGCTTTTGTAGCTCCCGCGGCTAT 2120973 30 100.0 35 CCGCGGCTAT .............................. CGGTAATGTGTACGCCCTCTACGTGTGGCATGCGC 2121038 30 100.0 38 TGGCATGCGC .............................. CACGTAAATACATTCATGCTATAATGAAATCAAGATAA 2121106 30 100.0 37 ATCAAGATAA .............................. CATCTATGCTATCTATGGTATAATAGAAGCATAAGGA 2121173 30 100.0 36 AGCATAAGGA .............................. GTTAGCTATGGCTTCTCTTTCCGCTTCCTCCTCCGT 2121239 30 100.0 37 CCTCCTCCGT .............................. GGCTTTGACAGGGACATAATTCCTTAGATCGCTTGTA 2121306 30 100.0 35 ATCGCTTGTA .............................. CGGGCATTGTGCCAAGCGTTAATGCCGACCAGTCC 2121371 30 100.0 35 CGACCAGTCC .............................. GAATACGACTTCGCATGTACTGCGTTTTCCATCGC 2121436 30 100.0 35 TTTCCATCGC .............................. CGCTTAAATATACGTACTCCGCCAAGTGACGCAGG 2121501 30 100.0 36 GTGACGCAGG .............................. CAATACATGGGCATGCCTAAAGGGAAGTTCCCAGTC 2121567 30 100.0 36 GTTCCCAGTC .............................. CGGGACTGGTCCATTGGAGCATATAACCACAATTAT 2121633 30 100.0 37 CCACAATTAT .............................. AAAGGGGTATGGGCCTACAAGAAATCCGGGTGTCAAG 2121700 30 100.0 37 GGGTGTCAAG .............................. GTACGCCCGGTACGCATCCAAACCTATTGGGGTTTCC 2121767 30 100.0 TGGGGTTTCC .............................. TCGGTGGAAT ========== ====== ====== ====== ========== ============================== 23 30 36 GTTTGTATTTTACCTATGAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.00,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [63.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [3587,280] Score: 0.18/0.18 # # Final direction: F [5.82,0.41 Confidence: HIGH] >NC_016023 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2123939 30 100.0 35 GGGCAGCTGC .............................. ATAAAACAAAAACAGTAAAGAAAATTGAGAAGCGT 2124004 30 100.0 36 TGAGAAGCGT .............................. AATAAGCTGCTGGAACACACGCTGAACATAAAGCGA 2124070 30 100.0 39 CATAAAGCGA .............................. TCATAATAAGTGACGACGGGCATTGTCACGCCGTCAAGC 2124139 30 100.0 36 GCCGTCAAGC .............................. ATAAATGTATAATGTGTGCCATATTGATTAGTATGT 2124205 30 100.0 37 ATTAGTATGT .............................. CAGCCTGTATATTCCTAGGATCACATACATAATCCCA 2124272 30 100.0 38 CATAATCCCA .............................. CGAGTTCGCGAAGTTCGGCCGTCGTTTTGGTGCTGGAT 2124340 30 100.0 38 GGTGCTGGAT .............................. GTCTTGGTTTTTGGGATGTCTGGCATGTCAAATGTACC 2124408 30 100.0 37 CAAATGTACC .............................. AGGAATACTCCAGCCTCGATGTGGTCATTGGTGCTTT 2124475 30 100.0 37 TTGGTGCTTT .............................. CATTATACCACCCCATATAAAATAAAGGGGTAGCGAC 2124542 30 100.0 35 GGGTAGCGAC .............................. AGGCGGGAGCGCCCCTCGGTCAAAAACTCATCTAA 2124607 30 100.0 37 ACTCATCTAA .............................. AAAGGCCATCACCCTGGTATCCCCCTTTGGTACGCCC 2124674 30 100.0 TGGTACGCCC .............................. CTGTTGAGTG ========== ====== ====== ====== ========== ============================== 12 30 36 GTTTGTATTTTACCTATGAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.00,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [50.0-51.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [402,88] Score: 0.18/0.18 # # Final direction: F [5.55,0 Confidence: HIGH] >NC_016023 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1096066 30 96.7 35 ATTGAGTGTT -............................. TTCGGCGGCGGCAATTTGTGCCTCCCTCTTTGTCT 1096131 30 100.0 36 CTCTTTGTCT .............................. GGTATTTTCCAACGTGTTTACTGACTGGAATACTGC 1096197 30 100.0 37 GGAATACTGC .............................. ATCCACAGCTAACCAGGATTTGGTTTAGCAAAGCGAT 1096264 30 100.0 38 GCAAAGCGAT .............................. TTCGGTTTATATCGTATCAACTCTAGTTTTACAGTCGC 1096332 30 100.0 35 TTACAGTCGC .............................. AAAAATATCGCGTCCAGCTAGTAGACTCAAACGAA 1096397 30 100.0 35 CTCAAACGAA .............................. ACGGCAAAAACAACGCCTTACTATGTCACAGCGAG 1096462 30 100.0 35 TCACAGCGAG .............................. ATACTCGAGGAAAGGCCTAGCAATTTATACGCGGT 1096527 30 100.0 35 TATACGCGGT .............................. GTGCAGGCGGATATGCCTTACTCCAGCTTTTTTAA 1096592 30 100.0 35 GCTTTTTTAA .............................. TTGCTTTTTGATTATCTCCAGTTTTTGCATTTTCG 1096657 30 100.0 36 TGCATTTTCG .............................. GGGCGCCTTACAAAATAGCATGAAAGGCGTAGGGGA 1096723 30 100.0 36 GCGTAGGGGA .............................. CGGCGAGATCGGCGTGATTGTCGATAATATATCGGA 1096789 30 100.0 35 ATATATCGGA .............................. GCCCAGCAGCGCACGAAAGCGCTCGGCCTGCTTCA 1096854 30 100.0 35 GCCTGCTTCA .............................. TTAGCTTTGGGTCTCTCAACAACGCAATTAAAAAT 1096919 30 100.0 37 AATTAAAAAT .............................. AACGAGCAATTAGCATTGGATCTTTTTTAGAAGCCTT 1096986 30 100.0 35 TAGAAGCCTT .............................. GCACGCCACGGAAAAACAGGCCATGGCGGAAATGC 1097051 30 100.0 35 GCGGAAATGC .............................. ATACTCGAGGAAAGGCCTAGCAATTTATACGCGGT 1097116 30 100.0 36 TATACGCGGT .............................. GGTACAGCACAAAAAAATTAATAACTGGTCATTTTT 1097182 30 100.0 37 GGTCATTTTT .............................. ACAAATGCAGTTTGACTGGTACGTGGCTACCACTCCT 1097249 30 100.0 37 TACCACTCCT .............................. TTTATACCGTTTTACAACTAAATGTACAGTATCTGGG 1097316 30 100.0 36 AGTATCTGGG .............................. GGCGAGGAGGCAAAGGATCTGATCGCGGCCGGATAT 1097382 30 100.0 36 GGCCGGATAT .............................. GCAAACGGTAATTTGCCCATACTGTGGCAAAAAAAG 1097448 30 100.0 38 GCAAAAAAAG .............................. GGTGCACATTTTTGATTTGGTATAAAAAGCTATAGGTA 1097516 30 100.0 38 GCTATAGGTA .............................. CTAAAACGATATTTCACGGAAGTCGACGAGGACAAGCG 1097584 30 100.0 37 AGGACAAGCG .............................. CGCCAGATTGCGCCACGCCAATACATCGCTGTAGCAG 1097651 30 100.0 37 GCTGTAGCAG .............................. TTAGCACCTACCCGTTTTAAAACCCAGTTTACACCCT 1097718 30 100.0 36 TTTACACCCT .............................. TAATACCGGACAGAGCTTTCTGAACGCCTGTCCATG 1097784 30 100.0 35 CCTGTCCATG .............................. CTAAATGTTCCTTGCAACGGTGCATGGGTAAAAAT 1097849 30 100.0 36 GGGTAAAAAT .............................. TAGGCAAGTGAAGACAGACCAATGGGTTATGCCAAA 1097915 30 100.0 TTATGCCAAA .............................. TCCAAAAACT ========== ====== ====== ====== ========== ============================== 29 30 36 GTTTCAATTCCTCATAGGTAAAATACTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [65.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [472,339] Score: 0/0.18 # # Final direction: R [0.27,5.28 Confidence: HIGH] >NC_016023 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2126172 30 100.0 36 TAGACATCGG .............................. GCATCTGCATCCGTTTTTGTTATCCTGGCTGCAATT 2126238 30 100.0 36 GGCTGCAATT .............................. TATTCCAACCCGGTTAATCTATTCAGGCATGTATCC 2126304 30 100.0 37 GCATGTATCC .............................. TCGATAATGTCAAGGCTGGTATAGAAGAATTGCAAAA 2126371 30 96.7 38 AATTGCAAAA ..............A............... AAGTATGCCGGAGATGTGGCGTGAAAAATCCATTTCGC 2126439 30 100.0 36 TCCATTTCGC .............................. AATAAAGTTGAAATTTTACTGATTCGGTCACTATAT 2126505 30 100.0 39 GTCACTATAT .............................. CGCGTGTCGTCCGTATCGTCGGCGCATAAGCGGTCCAAA 2126574 30 100.0 35 GCGGTCCAAA .............................. GTTTCATATCCCATCCACCGCCCGTTTGCATATTA 2126639 30 100.0 39 TTGCATATTA .............................. TACGTTACATCCGGCAGCTCCAAATAATCCTCTGCCTTC 2126708 30 100.0 37 CTCTGCCTTC .............................. AGATATTTCTCAGCCGCGCTGCTTCCGTCCAGCTCCG 2126775 30 100.0 37 TCCAGCTCCG .............................. CGCCGTATTCTTCAGCTATTACTTTCAGCGTTTTCTT 2126842 30 96.7 38 GCGTTTTCTT .................A............ AGTCGGCATGACTGAAATAATTTAGGCAGATTTTCATT 2126910 30 93.3 GATTTTCATT .......C.........A............ CATTCCGGGC ========== ====== ====== ====== ========== ============================== 12 30 37 GTTTGTATTTTACCTATGAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.00,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [58.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [107,709] Score: 0.18/0.18 # # Final direction: F [6.05,0.18 Confidence: HIGH] >NC_016025 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 420934 36 100.0 35 NNNNNNNNNN .................................... TGAAAAAGACGAACACTCCGGAGGACGGGAAGCCT 421005 36 100.0 39 NNNNNNNNNN .................................... AAAGTAAAAGCTTACGTTCCAACCCTGGAGTACACGCGG 421080 36 100.0 39 NNNNNNNNNN .................................... TGAAAGGTTTTGTGCCGGGGTGTGCCCGTTTTCCGGCGG 421155 36 100.0 37 NNNNNNNNNN .................................... CTTCTGCGCCGGGATTGAGCACGCCGTCCACATCACT 421228 36 100.0 38 NNNNNNNNNN .................................... CTCCCGCCATTCACTTCCACTTGCACCGATTGCCGCCA 421302 36 100.0 34 NNNNNNNNNN .................................... GACTGCACAACCGACAACGCAAACTGCTTGAACG 421372 36 100.0 35 NNNNNNNNNN .................................... CGGCGTCAGGACGACTTCACGCTGGGCGTGCGCGA 421443 36 100.0 34 NNNNNNNNNN .................................... CTCTCAGCGCCCACCATCGTTGATTACACCCGCA 421513 36 100.0 37 NNNNNNNNNN .................................... GCGATAATGACGGCGATCAGCGGGAACGGCATCAGAT 421586 36 100.0 37 NNNNNNNNNN .................................... TCGTAGTGATTGCCGGCCATCTCGTAGACGGCTTTCA 421659 36 100.0 35 NNNNNNNNNN .................................... TGTGGCTATAGTACACGTGCGCATTGAGCTTGACA 421730 36 100.0 38 NNNNNNNNNN .................................... TCCATTACGTTTATCGCGTGCCGCAATCCCGTCAAGCC 421804 36 100.0 38 NNNNNNNNNN .................................... AACCACGCTTCGCCGCGCATATCGGTAAGCGTCGGCGC 421878 36 100.0 34 NNNNNNNNNN .................................... AGCTTGCGGCGTTGCGTTACTCGTACCAGCGGGG 421948 36 100.0 35 NNNNNNNNNN .................................... GCAATCAGCGGGAAAGGCATCAGATTATCCCCCCC 422019 36 100.0 34 NNNNNNNNNN .................................... CAGGGGTTGCCCTTGTGTTGCACAAACCAGTCGT 422089 36 100.0 39 NNNNNNNNNN .................................... GCAGGCTTACCGCCGCCCAACTCTGTCAAGTGCTTGAAC 422164 36 100.0 35 NNNNNNNNNN .................................... CCTTGCCGTCTCCCCTTTATTCCTGCCTTGCCAGG 422235 36 100.0 34 NNNNNNNNNN .................................... TTCGGCGCACGCTGAAGGTCTGTCCCCCAGACGA 422305 36 100.0 35 NNNNNNNNNN .................................... CGGTTTTTGTGAATTCGACGGTTGGCGGCTGAAAG 422376 36 100.0 35 NNNNNNNNNN .................................... GCCAAGCCGGCGCAGGGAAAACGTCGCTCATCCCG 422447 36 100.0 35 NNNNNNNNNN .................................... TTAGGAAACCGCACCAAGACGCGAACAAGCCCGGC 422518 36 100.0 38 NNNNNNNNNN .................................... ACAATGGCGATCAAGGGAAACGGCATTAGATTACCCCT 422592 36 100.0 35 NNNNNNNNNN .................................... ACCACGTCGCCGGGCCACGTGATACCAAATAAGCA 422663 36 100.0 36 NNNNNNNNNN .................................... TACGCGCGGCGTTGCGCGTCATTCAAATGCGACAGA 422735 36 100.0 36 NNNNNNNNNN .................................... ACGGCCTTGATTTCGTCTTCGATATTCCGGCGTCGA 422807 36 100.0 39 NNNNNNNNNN .................................... ATACCGCTCCGCCGGAATTGTGGTTGGAGCTGGACGGCA 422882 36 100.0 36 NNNNNNNNNN .................................... CAGACGAGTGGCAGATACAGCTACCGTCTGCCCTTT 422954 36 100.0 35 NNNNNNNNNN .................................... TCAATCAGGAAAAACCAGCCACGCACCGTCGCGGC 423025 36 100.0 37 NNNNNNNNNN .................................... TACCAGCCGGACTTGTCACGCTTTTCGCCCGTATTGT 423098 36 100.0 34 NNNNNNNNNN .................................... GCGCTTGTTACGCCGTATTGGGCAAGGAATCGAG 423168 36 100.0 36 NNNNNNNNNN .................................... TTTGGGAAGCGGGTGGTGGGATTACCCGTCATTCTG 423240 36 100.0 34 NNNNNNNNNN .................................... GTTCGCTCTTATTACTTCAGCGGCAAGTACTACG 423310 36 100.0 38 NNNNNNNNNN .................................... TCCACGATGGGCCGGTAGTCCAGTCGCGCGCACTCTTG 423384 36 100.0 38 NNNNNNNNNN .................................... ACCATGTACACAAAGTACACACCGGATAACCTAACCCA 423458 36 100.0 34 NNNNNNNNNN .................................... GTGGTATTGCCGCCTGCTGCACGACTGGGCATGG 423528 36 100.0 37 NNNNNNNNNN .................................... CCCTTTTTGTGGCGCCTTGAAGCCGATCTTGTTCTTT 423601 36 100.0 37 NNNNNNNNNN .................................... GCAAATCTGGACGCAACTTTGATTGGCGCTGCGCCGG 423674 36 100.0 35 NNNNNNNNNN .................................... AAGCGGCACGGGAGAAACCAGGAACTCGCCAGTAT 423745 36 100.0 35 NNNNNNNNNN .................................... TGGTGCTCCGCCTGACGCGGTATCTCACGGCTGTC 423816 36 100.0 34 NNNNNNNNNN .................................... AACGTTTTGTCAAGGGGAAAGTTCCGATTTTTTT 423886 36 100.0 35 NNNNNNNNNN .................................... GCCGGCAATCACTACGACATCTGGGTTGGGTACGT 423957 36 100.0 35 NNNNNNNNNN .................................... GCTGGCTGGCGTGGGCTGTGCAAGGGGAACTTTTG 424028 36 100.0 35 NNNNNNNNNN .................................... TCCACGATTGGTCGGTAGTTCACTCGCATGCACTC 424099 36 100.0 36 NNNNNNNNNN .................................... TTGTCGACCGCCGGGAAAGCAGCCGGCGGAGTGTCG 424171 36 100.0 36 NNNNNNNNNN .................................... GTGGCAGGCGCGGTTTCTGAAGGCCCTACCCGCTAT 424243 36 100.0 35 NNNNNNNNNN .................................... GTGTGGGTTTGAGATTCGCAACCGGGCCTTCAAAG 424314 36 100.0 37 NNNNNNNNNN .................................... CGCACCTGAGGAAGTGGATAGAACGACTGTCGAAAGA 424387 36 100.0 34 NNNNNNNNNN .................................... GACTCGTTACTTGACGAGTCCACGCCAGATTAAG 424457 36 100.0 37 NNNNNNNNNN .................................... CGCTGAACTACGTTTTGGCTAAGGTCAATCAACTGGG 424530 36 100.0 36 NNNNNNNNNN .................................... AAAAACTCAAGCTCTTGCGCAAGCGCATGGGCGGCA 424602 36 100.0 35 NNNNNNNNNN .................................... GATTTCGCCTATGCGAAGACGCTTGCGCGGAGATA 424673 36 100.0 39 NNNNNNNNNN .................................... AAGAAGCCCAAGCGCAGGCGCGGATTATTGACCTGACCA 424748 36 100.0 35 NNNNNNNNNN .................................... GCGGTAATCGTGATTATAACGCCTGAAGCGCGGGG 424819 36 100.0 35 NNNNNNNNNN .................................... CGGACAAGTGGCAGATACAGCTACCGTCCGCCTTT 424890 36 100.0 34 NNNNNNNNNN .................................... ACCGCGCCGGTTTTTCCGTTTGAGCCAAACTGGG 424960 36 100.0 36 NNNNNNNNNN .................................... CCCGTCGCTGGTCAAGGAGCGGGTCAAGGGGCGTCC 425032 36 100.0 35 NNNNNNNNNN .................................... ACGGCGTGCACTGGGTACTTTGCTTTCCCGTCGAA 425103 36 100.0 34 NNNNNNNNNN .................................... ACCGGGTCTGACCCATATATTGCATCACGAGTGC 425173 36 100.0 35 NNNNNNNNNN .................................... TGTTCTCAACCGAAATCACCGTATCCGACGGGTTG 425244 36 100.0 36 NNNNNNNNNN .................................... ACGGTTGGCTTCAACATGGCGTTTCAATCCTGGGTG 425316 36 100.0 36 NNNNNNNNNN .................................... GACGCGGTGATTCGTGAGGCAATCAAAGACAGGATT 425388 36 100.0 36 NNNNNNNNNN .................................... CACGCTGCCGTTGCTGCTGGCGGGCTGGACAAGCTG 425460 36 100.0 38 NNNNNNNNNN .................................... GGCCGCTATCTGCACCTGCAGGGGAAGGTGTATTACGC 425534 36 100.0 34 NNNNNNNNNN .................................... CGGTGTGCTATGCAGTGTGGGGCTGGCGTCCACG 425604 36 100.0 34 NNNNNNNNNN .................................... TACGGGAGACGGCGCAGAAGCTCCCCTAAAGCGT 425674 36 100.0 37 NNNNNNNNNN .................................... TCACACGCTTCTACGCGAATTCACAGACCGGGAATGG 425747 36 100.0 36 NNNNNNNNNN .................................... ACCGGCGAGAGACCGTTTCTATCCTGCCTTGGGATA 425819 36 100.0 38 NNNNNNNNNN ...........................A........ ATTTCAGCCGAGCGACCGCCGCTTGGATTTGTTCACGA 425893 36 100.0 38 NNNNNNNNNN .................................... GCCATCGCAGTCAAGAGCACTCGCTCGCTCTCGCAACA 425967 36 100.0 38 NNNNNNNNNN .................................... TTATCACAGCGCGCCTCGACCGCAAAGTTGACGCAAAG 426041 36 100.0 34 NNNNNNNNNN .................................... CTGTCACACGTGCTGGGAGTACACACCAGAGGGG 426111 36 100.0 36 NNNNNNNNNN .................................... TGGTTTCTCCTTTCCCGCATAAAACGGCTTCGAGTG 426183 36 100.0 36 NNNNNNNNNN .................................... CGATTGCGTCAGCGTCACGCACCTTGTCTTTGACAG 426255 36 100.0 38 NNNNNNNNNN .................................... GCGAACTCGTCTTGGTGCGTGTCGTTATCCGGGAGACA 426329 36 100.0 36 NNNNNNNNNN .................................... TTGACCGGAGACTGCTGCGAACCAACCTTGTTGGCG 426401 36 100.0 36 NNNNNNNNNN .................................... ATCTCTGGGTCGGATACGTCCGACCCAACACAGCCG 426473 36 100.0 34 NNNNNNNNNN .................................... GCAGTTGCACCGCCGCCGAGAAAACTTGCGGCTT 426543 36 100.0 37 NNNNNNNNNN .................................... CACACCATAGTACTGCTTCCACGCAAGAGCGCGTCGG 426616 36 100.0 37 NNNNNNNNNN .................................... AGCAGGCTGTAGTGTTTTCCATCCAGTCTTGCGACTG 426689 36 100.0 34 NNNNNNNNNN .................................... ATCGCCCCTAAGTCTGGCGGCTCCCAAGTGTCCA 426759 36 100.0 37 NNNNNNNNNN .................................... TAGACTTTTGCGAGTTTCAGCGACATAAGGCGGGTCA 426832 36 100.0 35 NNNNNNNNNN .................................... AATCGCTGCTCGCACGGGTGCTTTTACTGTTTCGC 426903 36 100.0 36 NNNNNNNNNN .................................... CTTCAGTTAGAGGCCCTTCAAGACTTGCTCAATCAG 426975 36 100.0 34 NNNNNNNNNN .................................... GGCCGCATCCTGTACTCGCCGTCAATGCCGGGCC 427045 36 100.0 36 NNNNNNNNNN .................................... GACGGCGGCCAAGATCAGTCCGAAACACGCCGTCGG 427117 36 100.0 35 NNNNNNNNNN .................................... GCCCATGAGGTTTCGTTTCTTTTTTCGATCTGCGA 427188 36 100.0 34 NNNNNNNNNN .................................... CTCCCTTTTTTTCTGCTTGTAGAGAAGGCGCCTA 427258 36 100.0 35 NNNNNNNNNN .................................... TCAACGAAACCCGTAAAACCCTGAACGCCTACGCA 427329 36 100.0 34 NNNNNNNNNN .................................... AGACGGGACTGACTACGGCTTACCCAGCCTGGTT 427399 36 100.0 36 NNNNNNNNNN .................................... CTTGCCAAACTTCTACCGCTACTTCCAGCGCATAAG 427471 36 100.0 36 NNNNNNNNNN .................................... GCCAGCCGGTAAGAATCAAGCTGGTCTAGTTCTAAC 427543 36 100.0 36 NNNNNNNNNN .................................... TCCGACAAGCCAATTGGCGCGGTCAAACGCAGGTCA 427615 36 100.0 34 NNNNNNNNNN .................................... GCCGGGCGGGGGCTACGCCCGAAATCTCACACCG 427685 36 100.0 35 NNNNNNNNNN .................................... ATACCAAGTATAATAGACTTCTGTGCGAAGTTGTA 427756 36 100.0 35 NNNNNNNNNN .................................... TGCTGACGGTTGTGGACGACAGCGAGGATGATTCG 427827 36 100.0 36 NNNNNNNNNN .................................... CACCCGTCACGCGGGTGCGAGTGCCGGAAGGCACTG 427899 36 100.0 36 NNNNNNNNNN .................................... TTTGATTCGGTCTCAATCGAGCACGAACGCGCGTTT 427971 36 100.0 35 NNNNNNNNNN .................................... CGGCCGAAATACCGGCCATATTTCCGCGCTGGCTT 428042 36 100.0 29 NNNNNNNNNN .................................... TTAAAACCGGCGAATGGCGAATGGTAGAT 428107 36 100.0 1 NNNNNNNNNN ..ATG...C...C......T..G.AAT......... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 101 36 35 GTGCAAAAATCTTTGATGCCGAAAGGCGTTGATCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.60,-3.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [45.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [248,242] Score: 0/0.18 # # Final direction: F [0.78,0.27 Confidence: MEDIUM] >NC_016025 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 464322 31 100.0 45 GGCGGACTTT ............................... GCGTTGGTCAGGGCACGCAGCGTGCCGCGCTTGAACTCGTCCTTT 464398 31 100.0 41 CTCGTCCTTT ............................... CAGAGGGAGCGGAGAAGGCCAACCGTGAACGGAGTTCCTTT 464470 31 100.0 48 GAGTTCCTTT ............................... GGGCACAGCCGCTAAAATCCTGTCTCTGATGGCCTCTCCCTTTAATTC 464549 31 100.0 46 CCTTTAATTC ............................... GTAATTCGTTTCTACACTATTCTATACGCCCTGTCAAGTAACCTTT 464626 31 100.0 42 AGTAACCTTT ............................... GATGCGGATACAGTTTCAGATAACCAACCACCGACTGCCTTT 464699 31 100.0 45 GACTGCCTTT ............................... CGGGCTGTCAAGGTAAATGAAGTCGCTGAATGTCCACTTTAATTC 464775 31 100.0 ACTTTAATTC ............................... TCCGGCCGCG ========== ====== ====== ====== ========== =============================== 7 31 44 AATTCAAGGGGTCTTTTTCAAGACCCATGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.06%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-10.10,-10.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [35.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [14,563] Score: 0.18/0.18 # # Final direction: R [0,0.82 Confidence: HIGH] >NC_016025 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 984883 36 100.0 36 TGAGAGTGCG .................................... ATCGCTGCCACAGCCCTGCTCCATCTGGCGGAAGCC 984955 36 100.0 35 GGCGGAAGCC .................................... TTTCCCATGAGGCGGTGCGCTGGGTGCTCTGCTTC 985026 36 100.0 38 GCTCTGCTTC .................................... ACGGAGCGGTTTGCCGCTTTGTTGCCGCCCGAGGTGCC 985100 36 100.0 37 CCGAGGTGCC .................................... CTCCGGGTCGCCGGACCACGTCCACGCATACAGCAGG 985173 36 100.0 37 ATACAGCAGG .................................... CCAGGCGGCGGAGTAGGCGCTCCAGCGCCGCCCAAAG 985246 36 100.0 36 CCGCCCAAAG .................................... TCAACGATACTGAAGCGGTCGTCCAGCACGAAAAGG 985318 36 100.0 37 CACGAAAAGG .................................... GGCAAACGGGTGAACAGGCTGCTTGAAGTGATGCCGC 985391 36 100.0 37 GTGATGCCGC .................................... TCAGTCGTTGGCGCGCCGTCAAGAGCTTCCAGTACGC 985464 36 100.0 37 TCCAGTACGC .................................... TGGCGCGTAGTTTCCCACCTAGCGTCCATCAGCGCCT 985537 36 100.0 38 ATCAGCGCCT .................................... CTTGACGCGAACGTTTTGCTCGGGCGGCTGATTGGCCA 985611 36 100.0 36 TGATTGGCCA .................................... ATTCTTACCGGCTGGCCTTCTTGGTCTACCCATACC 985683 36 100.0 37 TACCCATACC .................................... CCCTTGACGGTGGAGGCTACGGGCGGGCTGCTCGCAC 985756 36 100.0 37 CTGCTCGCAC .................................... GCAACCGCGTGACGGGACGCTGCGTAGCGATCACCGT 985829 36 100.0 36 CGATCACCGT .................................... ACTGCACAACCGACATCGCGAACTGCTTGAACGCTT 985901 36 100.0 37 TTGAACGCTT .................................... ATTGACTGGAACAGCGACGAAAACGCCTTCTTTGACG 985974 36 100.0 35 TTCTTTGACG .................................... GCGCCTGCGCGCCTATCTGTGCCCGGCGGGTGTCT 986045 36 100.0 38 GCGGGTGTCT .................................... ATTGACTGGAACAGCGACGAAAACGCCTTCTTTGACGC 986119 36 100.0 36 TCTTTGACGC .................................... GCCCGGTTGCGGCAAATGCGCCGTATATCGTTGGCG 986191 36 100.0 37 ATCGTTGGCG .................................... ATCCCGACGTTGCCCGCGCCGATTGTTTTGTCAGCGG 986264 36 100.0 37 TTGTCAGCGG .................................... GGGACTTCTGGTTTCACAGGTGGGTTCTTGCTGATCA 986337 36 100.0 35 TTGCTGATCA .................................... TCCCAGCGCCAGTCTCTGGCGCGAACCAGCGCCAG 986408 36 100.0 38 CCAGCGCCAG .................................... TGCAAGGACGCTTTGACGCAATGGCCGGAGACAAGAAT 986482 36 100.0 37 AGACAAGAAT .................................... GCTAGCGAACTGGCGGGGTAGCCCCTACGGGGCTATA 986555 36 100.0 35 CGGGGCTATA .................................... AACAGCGGGAGCATCTTTTCAGACGCTGGCAATCC 986626 36 97.2 38 CTGGCAATCC ...................G................ AGACAGTCTCCGCTGGTGGCTGAAATGTCCTGGGAGTA 986700 36 100.0 38 CCTGGGAGTA .................................... CCGGCTCCGGGACGCCACAGGGTTCTCCGGCAACCGGC 986774 36 100.0 36 GGCAACCGGC .................................... TACGAAGAGCGTGACGGCAAGTTTGTCCTGCCGGTG 986846 36 100.0 37 CCTGCCGGTG .................................... GTGACCGGCGGCGCGCCGGACGGCTGGATGGTGATGG 986919 36 100.0 35 ATGGTGATGG .................................... ATCCGCAAGGTGGCAGAAGAAGTTGGCGTCTAACC 986990 36 100.0 37 GCGTCTAACC .................................... CGCAAGCCGACACGACAAGTGCCGGGCTGCTGATTCC 987063 36 100.0 35 TGCTGATTCC .................................... GGTTACGTCCCCGCTCCTACCAGCGGTCAGGTTAC 987134 36 100.0 37 GTCAGGTTAC .................................... GGGATTTCGGCGAGGGAAAGATTGACAGTACGCACGG 987207 36 100.0 38 GTACGCACGG .................................... CAGATGGTGCTCCGCGGCAAGCTGACGCGCCAGTTGCG 987281 36 100.0 37 GCCAGTTGCG .................................... TGTGACACGAGGTGTGCCTCGTCAATAACGACGAGAT 987354 36 100.0 35 ACGACGAGAT .................................... GGTGCATAACTTATTGATCTGACTGGGCTTAGCTG 987425 36 100.0 35 GGCTTAGCTG .................................... TTGACACTGTAGTGCGGCGTCCAGTGCCAGCGCGT 987496 36 100.0 35 GCCAGCGCGT .................................... CGGCTTGGTCACGGGCTGATTACCGATCCGCCAGC 987567 36 100.0 36 ATCCGCCAGC .................................... ACCTGCGTTTATGGCCCGCCGGCCACTGTTTGATTC 987639 36 100.0 35 TGTTTGATTC .................................... TAAATCCGGTCGTCGTCCTTGCACACGGCGTAGTA 987710 36 100.0 37 CGGCGTAGTA .................................... TCAAGGCGCCACGCGACCTCTTCGTTGTCGTGCTCCT 987783 36 100.0 39 TCGTGCTCCT .................................... CCGGCGCCGGTCGGGATCGCGTGCAAGGGGTGCCGACAT 987858 36 100.0 40 GTGCCGACAT .................................... CGCGTCGGACAAGTGTGACAGGCGGACACACGGGACGGTA 987934 36 100.0 39 CGGGACGGTA .................................... TAGACCTTGCCCGGCTCCGGCTCAGGCAGGCCAATGACC 988009 36 100.0 38 GCCAATGACC .................................... GCGCGAACAAGGGCGAGCTTAGACTGGGGGAGCGGGGA 988083 36 100.0 38 GGAGCGGGGA .................................... CGGCGTGACGCCCGCCAGAGATCGAGTAACTCGATGGC 988157 36 100.0 37 ACTCGATGGC .................................... AGTTCACAATCTCCATTTCGTTCTCCTTTCTTTTTCG 988230 36 100.0 37 TTCTTTTTCG .................................... GCTGCGGTGAGTTCGGCAATCAGTTTGCCCCGGCAGG 988303 36 100.0 36 CCCCGGCAGG .................................... GCGGTCAGCGTTAGCCTGTGTCAGTTCGCTTCTGAC 988375 36 100.0 38 CGCTTCTGAC .................................... GCAAGCCTATCTCGACGCCATCGCCCGTCGGGCTGAAG 988449 36 100.0 CGGGCTGAAG .................................... TGCTATGCTG ========== ====== ====== ====== ========== ==================================== 50 36 36 GTTTTCCGCTTTGAAAAAAAGCGGCTCCATTGAAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-9.90,-8.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [43.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [214,222] Score: 0/0.18 # # Final direction: F [0.37,0.27 Confidence: LOW] >NC_016027 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 883982 29 100.0 32 TCCAGGAAGG ............................. ATCACCGTTCTTGATTCGCCGCTGACCTCTGG 884043 29 100.0 32 TGACCTCTGG ............................. CGGGGATATGCCTGTATCTGGTGCAGAACAGG 884104 29 100.0 32 GCAGAACAGG ............................. GTGTTATCCTTCAGGATGCGGCAATCACGCCA 884165 29 100.0 32 AATCACGCCA ............................. GCCGACAACGCGGCCATCCAGGCATCGTGAGC 884226 29 100.0 32 CATCGTGAGC ............................. CCTGCTTGCGGGCATGATAGGCGTCAAGGCGC 884287 29 100.0 32 GTCAAGGCGC ............................. TTCAGGCGACCGCAAAGAAGCAGGCAGAAGAA 884348 29 96.6 GGCAGAAGAA ............T................ TAATCCACAA ========== ====== ====== ====== ========== ============================= 7 29 32 GTGTTCCCCGCACGCGCGGGGATGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [4,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [61.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [222,665] Score: 0.18/0.18 # # Final direction: F [0.68,0.18 Confidence: MEDIUM] >NC_016027 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 889939 29 100.0 32 NNNNNNNNNN .......G..T.....A............ GCTAATGTTAGAATAAGGTTAGCTCCCTCGAT 890000 29 100.0 32 NNNNNNNNNN ............................. GATCATGTCATGAACGAAGCGCTGTGCCGGTC 890061 29 100.0 32 NNNNNNNNNN ............................. AGACGTACGGAATGGGAATAAGTTTTTTGTTA 890122 29 100.0 32 NNNNNNNNNN ............................. CCGACCGTAAAATCCAGACGGAAGGCCGCCGT 890183 29 100.0 32 NNNNNNNNNN ............................. TCCTGCGTGAAGGTGGTCAGCTTGCCTTCCAG 890244 29 100.0 32 NNNNNNNNNN ............................. CACAACGGCATGTCGGGCGTTGCCCCAGCCGT 890305 29 100.0 32 NNNNNNNNNN ............................. AGATGCCGACCGATCTGCGTCAGTGCACCCAG 890366 29 100.0 32 NNNNNNNNNN ............................. CACGATTGCACGGCGCTGGGCCGCAGATAGAA 890427 29 100.0 32 NNNNNNNNNN ............................. TTCAAAACGAAGTTCGTAAAATAGCAGATTTC 890488 29 100.0 32 NNNNNNNNNN ............................. CTATCCAGCCAGGTGGTGAAATCGTTGAACGC 890549 29 100.0 32 NNNNNNNNNN ............................. TTAGTATGAGTGGGACAGTTGGGAAAACGACA 890610 29 100.0 32 NNNNNNNNNN ............................. GCCAGACGGCGCACAGTATCATTGTTGGCGAT 890671 29 100.0 32 NNNNNNNNNN ............................. ATGTTTCGAGTCCGCGGGAATGGCTGCGTGAG 890732 29 100.0 32 NNNNNNNNNN ............................. CAGGGACCGGCGCTGTTCGTATGTCACAGCCT 890793 29 100.0 32 NNNNNNNNNN ............................. CCGCGCACGTCACCATGCAATGCAGCATCGCC 890854 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 16 29 32 CGGTTCATCCCCGCGTGTGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [132,75] Score: 0/0.18 # # Final direction: R [0,1.05 Confidence: HIGH] >NC_016027 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 900500 29 100.0 32 GATACCCAGA ............................. CACGACCACGTCGGGCAGCAGTTCCGGCACGA 900561 29 100.0 32 TCCGGCACGA ............................. GAGCCACACAACAATTACAACCGGCACTACTA 900622 29 100.0 32 GGCACTACTA ............................. GTTCTGCGGCCAGTTTGCGGGATGATCGGGGT 900683 29 100.0 32 TGATCGGGGT ............................. CTCCAAATGGAGCCGACAAACCGCAATATTGC 900744 29 100.0 32 GCAATATTGC ............................. AAATCATCGGAAATTTTTTCCTGTCCGGTCTG 900805 29 100.0 32 GTCCGGTCTG ............................. AGGGTATGTGGCGAATGACGGGAACGGTGCAC 900866 29 100.0 32 AACGGTGCAC ............................. TCTGATATAGACGCGAGGACATTCCCCAGCGT 900927 29 100.0 32 TCCCCAGCGT ............................. TCTGCCGCCACCTGTGTGGACACCCACGGGCG 900988 29 100.0 32 CCCACGGGCG ............................. GCCATATGAGCGGGTTGGACAAAGATACGCCG 901049 29 100.0 32 AGATACGCCG ............................. GCATTGCCACGCATGGAAATGCCCGAATTGAT 901110 29 100.0 32 CCGAATTGAT ............................. TTCTTTGGCCCGATACCAGGTGAGCGTTCCGT 901171 29 100.0 32 AGCGTTCCGT ............................. GAGGCACCTGTAGGTGCTGGCAAGTCGGTAAT 901232 29 100.0 AGTCGGTAAT ............................. TCTTCCTGGA ========== ====== ====== ====== ========== ============================= 13 29 32 CGGTTCATCCCCGCGCGTGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [4,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [36.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [135,173] Score: 0/0.18 # # Final direction: R [0,0.27 Confidence: MEDIUM] >NC_016070 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 1095380 24 100.0 41 TCGCCCATCG ........................ CGAGCTCAATTTCCCCGGCCTCATTGACTTTGTACTTGGGT 1095445 24 100.0 41 GTACTTGGGT ........................ TGAAGGCCCAAACTCAGATCCAGAAAAGAATAAAAATAAAT 1095510 24 100.0 45 AAAAATAAAT ........................ CGTGCTACTTCCGGCCGGGACAACTATCACGTACTCGTTCTCCGC 1095579 24 100.0 39 CGTTCTCCGC ........................ CGCCGGGCTCCCCGCGGCCATCATCGCGTCAGGCTGTCG 1095642 24 100.0 44 CAGGCTGTCG ........................ TAGGTTCTACGGATAATATAATGCAGGTATTTGTAGAAAGTTCA 1095710 24 100.0 41 AGAAAGTTCA ........................ TATCGTTACGTTGTCGTACCAAACGACTTGAGCCGGCTGAT 1095775 24 100.0 43 GCCGGCTGAT ........................ GAGATACATATCGTTGAGCGTGGCATTAGATGCTTTGTCGATA 1095842 24 100.0 37 TTTGTCGATA ........................ CGAGCCAGGCGGGCACGTTCAACTGGTGGGATCTCAT 1095903 24 100.0 47 GGGATCTCAT ........................ CCCGAAACCCAAATGGACAGCAGAATTCTGGCGATAAAGGCGGAGAT 1095974 24 100.0 43 AGGCGGAGAT ........................ AAGAGGTAGTTAAGCACTTCAACGCAATAGGCTTTATGCCCTG 1096041 24 100.0 44 TTATGCCCTG ........................ TATATGAGACCAACCACGAGACTGAGTTCTATATTGATCCATTA 1096109 24 100.0 37 TGATCCATTA ........................ CGACGCCCGCGTCATCCCCAACGTCGGAGATGCAGGT 1096170 24 100.0 40 AGATGCAGGT ........................ AGCGTGGCTCCACTCGTCGGAGCATGCGACGAAGGCCGGC 1096234 24 100.0 37 GAAGGCCGGC ........................ CCTGGCTGTGTAAAGGTTGTCGAAGTACCTGGTCAAC 1096295 24 100.0 40 CCTGGTCAAC ........................ AGCACGATGAGGAGGCCGAGGAACCCCTTGAACCTGTCCC 1096359 24 100.0 41 AACCTGTCCC ........................ TTCTTCAGCCACCACCAGAATAGGAAGGCCGCCACGATGAA 1096424 24 100.0 43 CCACGATGAA ........................ AGCCACCGCGAAGTAGTTGAGACAGCGCCGGCGTGACGTTCAA 1096491 24 100.0 42 TGACGTTCAA ........................ AAAGCCGAGGTGAACAATTTTTATTGGTCTTAATGTATTCCC 1096557 24 100.0 49 ATGTATTCCC ........................ AGGGAACATATACAAATTATAAGGCCTTAATAACAATAGAGAACTGCGA 1096630 24 100.0 51 AGAACTGCGA ........................ ACTGTTATGAGACCGTCCCCGTACTGGTAGACCTTGTACCCCTTGCTCTGA 1096705 24 100.0 43 CTTGCTCTGA ........................ GGTTCACTGAGAGGTACGGAGAATCCATGCACTGGCCTTGCGG 1096772 24 100.0 41 GGCCTTGCGG ........................ AAACAAATTAGGAGATGTAGTGATAGCGAAAAGGAACGAGG 1096837 24 100.0 45 AGGAACGAGG ........................ CACGAGCATCCCCAAGCCCGAAGTAATTGTCAAATACCCAGAGCT 1096906 24 100.0 44 ACCCAGAGCT ........................ AAAGCTTAGAATTGGAATTTCTACTATTGCGCTTAGATAGCTAT 1096974 24 100.0 AGATAGCTAT ........................ CGGGCCTTCT ========== ====== ====== ====== ========== ======================== 25 24 42 CTTTCAATCCTCTTTTTGAGATTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: R [matched GAATCTCAAAAAGAGGATTGAAAG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [38.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [145,348] Score: 0.18/0.18 # # Final direction: R [0,5.45 Confidence: HIGH] >NC_016070 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 345411 24 100.0 44 AATTAGAACG ........................ ACGCGCTCTACGCCGTCCACGCGAGGCTATATAGCATCGCGATA 345479 24 100.0 44 CATCGCGATA ........................ TCAATGGCGATACAGCGTGGGGGCCTGTAGTGCCATGGCTCACA 345547 24 100.0 49 ATGGCTCACA ........................ CGAAGAGGTCTCTGGAGCGGCTGGGGAGCTAAAATATCCCCTCCCGTAC 345620 24 100.0 47 CCTCCCGTAC ........................ CCCCGCTTTTTCTTCCGACCACGTAACTGTGGAAGTCAAACGTGATC 345691 24 100.0 44 AAACGTGATC ........................ GCACCTACCTCTCTCTGTGTGTGGCCAGTCCATCGGAGATAACC 345759 24 100.0 46 GGAGATAACC ........................ AGCTAGGCTACATTTCTAAGACTGGCGGTGCTCACTTTGTGGAAGC 345829 24 100.0 TTGTGGAAGC ........................ CGCCCACGTT ========== ====== ====== ====== ========== ======================== 7 24 45 TTTCTACTATCTTTTGATTTCCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.83%AT] # Reference repeat match suggestion: R [matched GTGGAAATCAAAAGATAGTAGAAAC with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [53.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [340,271] Score: 0/0.18 # # Final direction: R [0.27,0.5 Confidence: LOW] >NC_016043 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 218991 28 100.0 32 NNNNNNNNNN ............................ AATCAGCTCCCTATTTCTATCAGTTATTTGTG 219051 28 100.0 32 NNNNNNNNNN ............................ TAATAATTTTGGTGATATCGAAGTGTTAGATG 219111 28 100.0 32 NNNNNNNNNN ............................ AATTCGTCCCAACTATTCGAATTTAACGGTTC 219171 28 100.0 32 NNNNNNNNNN ............................ ATAATTTACGCAGACACTTATTTCCTATCATC 219231 28 100.0 32 NNNNNNNNNN ............................ TAAAAGAATTAAGTATTGGTGATAATAATTTT 219291 28 100.0 32 NNNNNNNNNN ............................ TCGACGAATTGTTGGTAGACGATTGCAATTAC 219351 28 100.0 32 NNNNNNNNNN ............................ TCGTGAAAACCATCTTCTGAAGTGATTCCACG 219411 28 100.0 32 NNNNNNNNNN ............................ TAATAGATAGATATCATCAACAGATACAGCTG 219471 28 100.0 32 NNNNNNNNNN ............................ TCAAGCAATATCGGGTCTAAACCATTACCTGA 219531 28 100.0 32 NNNNNNNNNN ............................ TCAATAAGACTTTAATTATTCTTCTTCGTACG 219591 28 100.0 32 NNNNNNNNNN ............................ AATTGTTTCTTTATCTGTGTAATTCATTTCTT 219651 28 100.0 32 NNNNNNNNNN ............................ TAATAATTTTGGTGATATCGAAGTGTTAGATG 219711 28 100.0 32 NNNNNNNNNN ............................ GTACAAATCTAGCATCAGGCATTAGTCCAATT 219771 28 100.0 32 NNNNNNNNNN ............................ TTATTTAGCGTTTTTACAATCCAGCTAGTTAG 219831 28 100.0 32 NNNNNNNNNN ............................ ATGATTTACTCCTTTAGTTAATTTAACAGCTT 219891 28 100.0 32 NNNNNNNNNN ............................ CAAAAACTCTAATGCTTCTTTTAATTCTTGAT 219951 28 100.0 32 NNNNNNNNNN ............................ TCTGTAAAGTTTATTTAAGTCGATATTGAAAG 220011 28 100.0 32 NNNNNNNNNN ............................ AATTGATATATGAACTTCTTTCAGAAGAAGAG 220071 28 100.0 32 NNNNNNNNNN ............................ GTCTAGTTCAACATCTAAATAAATAAAATAAT 220131 28 100.0 32 NNNNNNNNNN ............................ TGACTGGCTATGAAAGAAATTTTTAATTCTAA 220191 28 100.0 32 NNNNNNNNNN ............................ GATTAATATTATCAATATGATTATCTATATAA 220251 28 100.0 32 NNNNNNNNNN ............................ ATCAACAAACATATAAGAGCCAATCAGTTCCC 220311 28 100.0 32 NNNNNNNNNN ............................ TTTTTTTAACAAGGGAGTAAAAAAAATAATAT 220371 28 100.0 32 NNNNNNNNNN ............................ CCGAATTGGAGCTATCGGTCTAGCTCCCGATG 220431 28 100.0 32 NNNNNNNNNN ............................ TAATAATTCTGCTTTTAATTGATTGAGATTTT 220491 28 100.0 32 NNNNNNNNNN ............................ TCTTCATCTCAATAAACATACCGCAAAACGGT 220551 28 100.0 32 NNNNNNNNNN ............................ TAACAATAGATGAGCTCCCAAAATTTTTTGAA 220611 28 100.0 32 NNNNNNNNNN ............................ ACCACGGAGCGTTTTGTGCAGTGAGTGTTTTG 220671 28 100.0 32 NNNNNNNNNN ............................ TTATTGTAGGTTATGTAAAAAAGAATTAGCTA 220731 28 100.0 32 NNNNNNNNNN ............................ TTTGACATCCTCAACAATCTGCTCGCCTCGAT 220791 28 100.0 32 NNNNNNNNNN ............................ ACTGCGGAAGCGGTGCTATAGAATCTAAACCA 220851 28 100.0 32 NNNNNNNNNN ............................ TGCAAATACAACTTGTCGTGGCTGATCTTCCA 220911 28 100.0 32 NNNNNNNNNN ............................ TGAAGATGGTGGTTCTTACTTGTTCTACGGTT 220971 28 100.0 32 NNNNNNNNNN ............................ ATCACTTAGAACAGTAACAGGGTGTCTTAAAC 221031 28 100.0 32 NNNNNNNNNN ............................ TATACAGCAGCGGCAGTCGGTGCCCAACGTAA 221091 28 100.0 32 NNNNNNNNNN ............................ ACAATTATGTAGGCATACTGGTTGTAATAAGC 221151 28 100.0 32 NNNNNNNNNN ............................ AGACATAGTTGATACCAGTCATCGATTTGATT 221211 28 100.0 32 NNNNNNNNNN ............................ TTTGAAATTAAATTCAAAGTCAGGTTTTATAA 221271 28 100.0 32 NNNNNNNNNN ............................ CAATATTCAAACCATACGTCGATTTCCCCAAA 221331 28 100.0 32 NNNNNNNNNN ............................ TTGAGAACGGCATAAACGGGCGTCGGGCAATA 221391 28 100.0 32 NNNNNNNNNN ............................ TTTCATCAGCTTCACATATTTTTAAGTGATTA 221451 28 100.0 32 NNNNNNNNNN ............................ TGCCTGTGTAATTGCAATCGTCTACCAACAAT 221511 28 100.0 32 NNNNNNNNNN ............................ AGAACTTTTAGTGATTGACGAAATAGGAATTA 221571 28 100.0 32 NNNNNNNNNN ............................ ATAACCAACAGATAGCTTGATTTCCTTATATT 221631 28 100.0 32 NNNNNNNNNN ............................ TTAAAAGGGTATATCTTCGTGAAGATTTTCGG 221691 28 100.0 32 NNNNNNNNNN ............................ AAGAGCAGGTCGAACTTTTTTTATGGGCAAAT 221751 28 100.0 32 NNNNNNNNNN ............................ TTGGACTTCGTGTAGATCCAGTACTACCAATG 221811 28 100.0 32 NNNNNNNNNN ............................ TCTTGGAATTGGTCGTTGTATTCAACGCCTAA 221871 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 49 28 32 GTTAACTACCGCATAGGTAGTTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.29%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.30,-6.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [2238,176] Score: 0.18/0.18 # # Final direction: F [0.55,0 Confidence: HIGH] >NC_016051 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1219336 30 100.0 36 NNNNNNNNNN .............................. GAAGGTGAAGACGGATGGACAGGCGAGCGGGGCCGG 1219402 30 100.0 39 NNNNNNNNNN .............................. CTGACTGGCTCGACAGCGATGAGCTTTTAACGGTTTACA 1219471 30 100.0 39 NNNNNNNNNN .............................. CAGAAAGCCGTCGAAGGAGATGGAGAACTGGAGCGTGCT 1219540 30 100.0 37 NNNNNNNNNN .............................. TCAAATCTGGCAAGTTGTCTTCCGTCAATTTGCCCGC 1219607 30 100.0 39 NNNNNNNNNN .............................. TGAGTAATTCGATGAGGGCAGGTTGTAGCTTTCGCCTTC 1219676 30 100.0 37 NNNNNNNNNN .............................. CAATCGTGAACGTGGGTTCGCTTTCGGCGTATTTTCT 1219743 30 100.0 37 NNNNNNNNNN .............................. CTCTCAAAGAAGAGCTTGCGAAGCTGACTTACACGGA 1219810 30 100.0 39 NNNNNNNNNN .............................. TTCATTAAAATTTTCGGCGTTGTGGCTTATTACATTTGC 1219879 30 100.0 37 NNNNNNNNNN .............................. GTCATCGCAATCGCGGCACTAATCGCGGCGATTGTCG 1219946 30 100.0 42 NNNNNNNNNN .............................. ATCAGTGATTACGAGAACTGCAGAGATGATCGCGCTATAAAC 1220018 30 100.0 39 NNNNNNNNNN .............................. GGTTGAACGCAACAAACTGGCTCAGGCCGTCGTAGAGGA 1220087 30 100.0 37 NNNNNNNNNN .............................. GTGACACGAGGAACACGTCACTGTTTGCATGGAGCTT 1220154 30 100.0 38 NNNNNNNNNN .............................. CAGGGCCTCATCCTGATCTTCCTCGCGAGTATTGGGGT 1220222 30 100.0 36 NNNNNNNNNN .............................. GCGCTCAATGCCGAGCACTAGGTAAACGTAGTGTAT 1220288 30 100.0 35 NNNNNNNNNN .............................. ATGCGGAATTTGTTTACATCAAGGCCGTGCGGAAA 1220353 30 100.0 36 NNNNNNNNNN .............................. ATCACGGTATCAAGGCATCGCAGGCGGGCACTTACT 1220419 30 100.0 40 NNNNNNNNNN .............................. TGTAGAGTTCAGGGCCAGCCTCGGGCTTCGCGTAAACCAT 1220489 30 100.0 38 NNNNNNNNNN .............................. CAACGTGCTTCTTCAAGCCCTTTGCCGCCGCGAGGATT 1220557 30 100.0 37 NNNNNNNNNN .............................. AAAACTTTAATTATTATTGGTGCGTACGTTTGTTGGT 1220624 30 100.0 36 NNNNNNNNNN .............................. CCCAGAAACGGGCGAAACGGCAGACTAAACGGGCTT 1220690 30 100.0 37 NNNNNNNNNN .............................. GAGGGAACTGAGGGAGGGGCGCCTATGAGGCCGGGGG 1220757 30 100.0 38 NNNNNNNNNN .............................. TGTTGTGTGCATTGTGGACGGGCACGGGTCAGGAGCGC 1220825 30 100.0 35 NNNNNNNNNN .............................. ACATGGTGGAGGAGATATACAACCTTGAGGAACTG 1220890 30 100.0 37 NNNNNNNNNN .............................. GAAGAGACCCCTGAAGCTGAAGAGGAGCACGCCCCGT 1220957 30 100.0 38 NNNNNNNNNN .............................. TGGGCATCGGCATACTCTGCATGGCAATATCGGACAGC 1221025 30 100.0 37 NNNNNNNNNN .............................. TACTGAGTCTGCAATCCCCAACAAGCGAAGGCTTTTT 1221092 30 100.0 36 NNNNNNNNNN .............................. GCACGCTACTGATGTTGAAGTGCTCCTCATTCGCAA 1221158 30 100.0 38 NNNNNNNNNN .............................. CCTGCAGACGCTGAGGGACGTTTCCGGGCTTGGCCTCT 1221226 30 100.0 37 NNNNNNNNNN .............................. TGCCGTACAGAATTGAAGGTATCAGCACGAGAACTGG 1221293 30 100.0 38 NNNNNNNNNN .............................. CGCGGAGGTAGAGGAAAAACCCGCCCCTCGGGACGCGC 1221361 30 100.0 39 NNNNNNNNNN .............................. CTGTTGAATGTGCCGATAAAGGTGCTCCCGAGGTACACG 1221430 30 100.0 37 NNNNNNNNNN .............................. CGACGTAGGTCGTGACGGTCGTATCGACGTAGTGCAG 1221497 30 100.0 42 NNNNNNNNNN .............................. GAAATCAAGGTGGCGTCTCAGGTAATAGCTGTATCTCTTTGC 1221569 30 100.0 37 NNNNNNNNNN .............................. TGGAAATATTCGCTCTCTATCCCCGCGTGCGCCACCT 1221636 30 100.0 35 NNNNNNNNNN .............................. ATACCAAAGAACCGCGACAAGCTCTTCGTTGACAG 1221701 30 100.0 35 NNNNNNNNNN .............................. CTGTTTATGATTCCGTAAGAAGCGCCGTCTACGTA 1221766 30 100.0 36 NNNNNNNNNN .............................. TTTGCCCCTGAGCCGCCTGAGCCGGAGCCGGTTCCC 1221832 30 100.0 38 NNNNNNNNNN .............................. TGAGATAGATTCAGTTCTACACGAGCATTTGTTGGTAC 1221900 30 100.0 36 NNNNNNNNNN .............................. ACGGAGACAGCATCACGTACGAGTACAAGTTCGAGG 1221966 30 100.0 37 NNNNNNNNNN .............................. CATGGACTGACATTACTGGCCTAAAGGTAAAGACAGA 1222033 30 100.0 44 NNNNNNNNNN .............................. GCGAAAGGAGTTGATGTCGTCGAGCTTCCGGTCCATGTTGTCGA 1222107 30 100.0 40 NNNNNNNNNN .............................. TCCTCATGGACGGATTCACCGATGCCCCCCGCCTTACGGC 1222177 30 100.0 36 NNNNNNNNNN .............................. GGGCTGATTGCTGTACCTTCCAACGACCCCCGCCTG 1222243 30 100.0 37 NNNNNNNNNN ............G...........C....C GAGAAGATATATGGTTTTCTGCTGTTCCGGTTCAGAT 1222310 30 100.0 1 NNNNNNNNNN ..........AC.CTTGAA.AGCCCA.GCC NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 45 30 37 GTTGCAATAAGACTCGAGGAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.60,-0.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [50.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [456,3] Score: 0.18/0.18 # # Final direction: F [5.36,0 Confidence: HIGH] >NC_016051 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1609161 30 100.0 35 TTCGCGCCCT .............................. TCGATATAGAGGGTCACGGCGCTCATCGGGGTTAG 1609226 30 100.0 37 TCGGGGTTAG .............................. TGATTCCATCAATCGCGGTTAAATTCGCGGGCATCCA 1609293 30 100.0 40 CGGGCATCCA .............................. TGACGTTGTAGCTCTGCAGGGGCAGAGTGAAGCTCACCCC 1609363 30 100.0 38 AGCTCACCCC .............................. AGACTTCATGGCGGGCACTCAGAAACCACTTGTGCTTA 1609431 30 100.0 38 CTTGTGCTTA .............................. GTGTAACCCCGAGGAAGTCCGCTATCCATTCGGTCAAA 1609499 30 100.0 36 TTCGGTCAAA .............................. GACAAAGCATATTCGTTGCAAGCGTTGACCTTAAGG 1609565 30 100.0 37 GACCTTAAGG .............................. AACCGTTTCGCTTCCTTCTTGCATGGTTCCCACATCC 1609632 30 100.0 43 TCCCACATCC .............................. TTTTCAGCAACAACAAAGCAACTAAATCAGATGAAAGTTGCAA 1609705 30 100.0 36 AAAGTTGCAA .............................. TATTCTGTGGGCTCGGTAGGGAGTAGGATTATTTTT 1609771 30 100.0 37 GATTATTTTT .............................. TTCAAAATAGTGGGCAATTTCTGCGGGGATTTTGTCA 1609838 30 100.0 38 GATTTTGTCA .............................. AAGCTCGGCGAGAGCATCTCAATCTCTCTCAGCGCGCC 1609906 30 100.0 36 TCAGCGCGCC .............................. GGAACCACCCTCTGCCAATGATTTTATCGTCTTCGT 1609972 30 100.0 38 TCGTCTTCGT .............................. CAGATACCGATATATTTGTATGTCTACGACGCAGATAA 1610040 30 100.0 38 ACGCAGATAA .............................. TTTGATAGCTCCGGCGCGCTTCAAATATCTCTCGACGC 1610108 30 100.0 40 CTCTCGACGC .............................. CCAGATGTGTCCCTCGACGTGGGCATCTGGTAGGCCAAGC 1610178 30 100.0 40 TAGGCCAAGC .............................. TGAGACTAATCAGGAAAAGCGGGATCAGATAGGCGAAAAG 1610248 30 100.0 37 AGGCGAAAAG .............................. TACGGGACATTAGTTACGACAAAAAGAGTTCAGGGAA 1610315 30 96.7 37 GTTCAGGGAA .................A............ GGGGTTTTTAAACGAAGCGGGAACCTCAGCGGAGATA 1610382 30 100.0 38 AGCGGAGATA .............................. CGAAGACGAAGATGGCGCCCTCTATGCCCTTGAGACCC 1610450 30 96.7 38 CTTGAGACCC ...............T.............. GGGTGATATGACTGTCAGCGTTGAAATGTACCCCTCTT 1610518 30 96.7 37 TACCCCTCTT ...............C.............. ACGACTAATCGAAAGCTTTCGATAGTACTCCATTCAC 1610585 30 96.7 36 CTCCATTCAC ...............T.............. TGTCGGGGTCGCTGATCTCTGCGATAATGTAGTTCT 1610651 30 96.7 37 ATGTAGTTCT ...............T.............. CGGTAGCTTCTTCCTGGCTCTGATCCCAAGTAACTAC 1610718 30 96.7 AAGTAACTAC ...............T.............. TTTTCTCTGTGTATGTAGACCCTCATGTATCCCTCCT ========== ====== ====== ====== ========== ============================== 24 30 37 GTTGCAATAAGACTCGAGGAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.60,-0.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [48.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [482,111] Score: 0.18/0.18 # # Final direction: F [5.09,0.27 Confidence: HIGH] >NC_016051 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 464541 30 96.7 36 TGAGAGGGTT ..............A............... CTCCAATATCGCTTTAAAGCTTATTCTCGGCGTTTC 464607 30 96.7 36 TCGGCGTTTC ..............A............... TCTATATTGGAACTCCAAATCTCTGAAGTCTTCTCT 464673 30 96.7 38 AGTCTTCTCT ..............A............... CGATTGCATAGGTGTCGCTTGCCGTTGTTTGACTGTAA 464741 30 100.0 37 TTGACTGTAA .............................. ATATATCGAGGAGCGGTTGTGGAGGTTATATAACCAA 464808 30 100.0 37 ATATAACCAA .............................. GGGGTTCCGGCTGGAGCGTATTTACTTCCACCGGAAT 464875 30 100.0 36 CCACCGGAAT .............................. CTTCTTATTCTCGGCGTCCCATTCCTCGACCCAATA 464941 30 100.0 37 CGACCCAATA .............................. TCCACGTTCAACGTCAGCTTCCACCTAAAGTCAGCCT 465008 30 100.0 37 AAGTCAGCCT .............................. ACCCTCTTCATCCGGCACATCCACCCACGTGATGTTT 465075 30 100.0 37 CGTGATGTTT .............................. CGCATTGGCGGGGGACAATCCGGACAGTAATGAAACG 465142 30 100.0 39 TAATGAAACG .............................. GTCCTCGAACTTGTACTCATAAGTGACACTGTCCCCGTC 465211 30 100.0 36 TGTCCCCGTC .............................. AGATCTCGCGAACAATGGTGGCCTCATCGGGACGCT 465277 30 100.0 39 TCGGGACGCT .............................. TGGAGGTGAAGGCGAGGGAGAGGGTGCTGGCCGCGCTCA 465346 30 100.0 37 GCCGCGCTCA .............................. TTGATCCCCCGCGTTCCATGCCTTGTCGGCCCTCTTC 465413 30 100.0 36 GGCCCTCTTC .............................. CGGTTCGGCCGTGTTCGAGTTTTTCGATGATTTTGA 465479 30 100.0 41 ATGATTTTGA .............................. TGGGAGCGTCGCAACGTCAGTAATGTTGAGCTCAGTCATGA 465550 30 100.0 41 TCAGTCATGA .............................. CCACCGGGATTTTGTTGCCCTCTTCGTCGGTCTTTTTCGTG 465621 30 100.0 37 CTTTTTCGTG .............................. GCCTGATTTCGTATTTTGGATCGTCGCGGTACTTCTT 465688 30 100.0 37 GGTACTTCTT .............................. AACCTGCGCGAGGACAAATGACAGCGATGTTCCAACT 465755 30 100.0 TGTTCCAACT .............................. AGGGCGCGAA ========== ====== ====== ====== ========== ============================== 19 30 37 CTTTCAATTCTCCTCGAGTCTTATTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.60,-0.60] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [397,514] Score: 0/0.18 # # Final direction: R [0,4.5 Confidence: HIGH] >NC_016070 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 1075974 24 100.0 42 NNNNNNNNNN .............T.......... CCAAAACGGCGCCTGGAAGTAGAGTAGCCAGAACTCCTGGTA 1076040 24 100.0 41 NNNNNNNNNN ........................ ATCGCTTGCATACAAATTAGAGTATACAGAAAAAGAAGTTG 1076105 24 100.0 45 NNNNNNNNNN ........................ AGTTCAGTGTTGAGATAACGATAAAGAAAAGCTATGTAGAGAAAA 1076174 24 100.0 39 NNNNNNNNNN ........................ TTCTATTCCTCATTCTTAAGACTTGTGGCCCAAGTCTTA 1076237 24 100.0 57 NNNNNNNNNN ........................ GAGTGCTTAAGCTCTATGGAGAGCAATAGAGAAGTACTCTGTAAGATTGTCACTTAC 1076318 24 100.0 44 NNNNNNNNNN ........................ CGTATATTCCATGTTTTCTCTTATCAGCATGATCCTGTGACATG 1076386 24 100.0 42 NNNNNNNNNN ........................ GTTGTCCGTCCTCTTTGACGGCTCAGTGCTGTCCGTCAGGCC 1076452 24 100.0 46 NNNNNNNNNN ........................ CAATGGTGTGTTCAAGCTGATATTGTTAGCTTCGTCATCAATAGAT 1076522 24 100.0 45 NNNNNNNNNN ........................ CTTCACGATGGTATCGATGTTAATTGTGCCGATGTTGATCGTCGC 1076591 24 100.0 40 NNNNNNNNNN ........................ CGAAAAAAGAAGGGATTAGGAGGTGGTAGCGGACACGACT 1076655 24 100.0 46 NNNNNNNNNN ........................ CCAGGAAGAAAGCCAGGAGATCCTCGTCGACAGAATGAGGGAAAAG 1076725 24 100.0 43 NNNNNNNNNN ........................ AGATTCGAGCTCTTTGCTGGCAGATTGGGATACCTCGAGAAGA 1076792 24 100.0 43 NNNNNNNNNN ........................ ATAGTACATAGCCGCCGCGCCTAAAGGTTTTTTCCTCAAATCG 1076859 24 100.0 42 NNNNNNNNNN ........................ GCCCATCAGAAAATTCAGCAATTCTTTATAGAATATTCTCAA 1076925 24 100.0 43 NNNNNNNNNN ........................ TGGCGCGAATATGTGCGCTATATTGAGGAGCTGTACAGGGATT 1076992 24 100.0 42 NNNNNNNNNN ........................ AGCCATCGGAGAAAAAGCGCAAGAAGGGCTATCTAGTCAAGA 1077058 24 100.0 44 NNNNNNNNNN ........................ CTGTGAAGAACACGTTTATCAAGTAGGCCCACAAGGCGAACTGC 1077126 24 100.0 43 NNNNNNNNNN ........................ AAGTATATTGACTCTCCAATCGGCATAACGTGTATCCGCCAGT 1077193 24 100.0 49 NNNNNNNNNN ........................ ATCGACTGGAGGGGGCTGACGGAGGGGTTGAGGAGCGTGCCCCGCAAGG 1077266 24 100.0 42 NNNNNNNNNN ........................ TGTCGCACTTGCTCAGCATGCGGCCGTCTGGGTGGTACTCTA 1077332 24 100.0 41 NNNNNNNNNN ........................ CGACGAGACACTGTGAGTGCTTGCGCTGCGTGTACACGAGC 1077397 24 100.0 38 NNNNNNNNNN ........................ ACATCCTCCAGCACGTCCTGGAACATATAGCGCAGTGG 1077459 24 100.0 40 NNNNNNNNNN ........................ ACACATTCGGACAGCGGCTCACCGCCGCAGAGCGACTCGA 1077523 24 100.0 40 NNNNNNNNNN ........................ GAAGAAAAGATCGAGGAAATACCGGGCGAGTGGTTAAGCA 1077587 24 100.0 43 NNNNNNNNNN ........................ GCGACGTACCACGCCAGGATGTCTTGTATCCGCTCCCCCGCGA 1077654 24 100.0 41 NNNNNNNNNN ........................ CCGCCTTCAAAGGGCCCCTCTGTGTATATACGTGTATATAG 1077719 24 100.0 45 NNNNNNNNNN ........................ ACGCGGATCTACGTGGTCAGGCATGCGATCGCATATCCGACTTCG 1077788 24 100.0 37 NNNNNNNNNN ........................ TGAGGCGCTCTGAAACACAGCTGTGATGTTAAATACG 1077849 24 100.0 42 NNNNNNNNNN ........................ TGGGAAGGAGCCAGTCGGCTCCCCAGACGGCCGGGGCGAAGA 1077915 24 100.0 39 NNNNNNNNNN ........................ GCGTCGGGGATGTCGGTGACGTCAACGCCCTTTGTGTCA 1077978 24 100.0 39 NNNNNNNNNN ........................ AAGATGAGAAAAAAGAGGTTAACGATCGCGGATGTACTT 1078041 24 100.0 50 NNNNNNNNNN ........................ TATACGACGCCTACGTGGGCCTCTTCCTCCTCCTCCCCGTGAGCGGCGAG 1078115 24 100.0 46 NNNNNNNNNN ........................ GCGGACATTTGCGCCGCACGAATAATCAACTACATCTCTCAATACA 1078185 24 100.0 1 NNNNNNNNNN ........................ NNNNNNNNNN ========== ====== ====== ====== ========== ======================== 34 24 43 CTTTCAATCCTCTCTTTGAGATTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.50%AT] # Reference repeat match suggestion: R [matched GAATCTCAAAAAGAGGATTGAAAG with 95% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [146,356] Score: 0.18/0.18 # # Final direction: R [0,5.86 Confidence: HIGH] >NC_016070 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 1081877 24 100.0 43 AGGAGGCCCG ........................ TCTGGACTGTGTGTTGCAACAGCGAAGTCGCGAACACCTCGAC 1081944 24 100.0 40 ACACCTCGAC ........................ CGTTGATGTGGCCGGGACTGGCTGACTCAGCTATTACGTT 1082008 24 100.0 42 CTATTACGTT ........................ ACTTCAAGGCGTGCTTGCTGGCGTTTTAGGCGACGATGAGCT 1082074 24 100.0 41 ACGATGAGCT ........................ CTCTTTTTCCTGCCCCGTTCTTCCAACTCTTCGCCGGTCGT 1082139 24 100.0 39 CGCCGGTCGT ........................ CCGAGTAGCCGACGGCGCGTCCGCTCACTTAAGATCTCA 1082202 24 100.0 41 TAAGATCTCA ........................ TGTGATAGATGAGATAGACAAAATCAAGTTCAGCACCACGT 1082267 24 100.0 51 AGCACCACGT ........................ GCGCACTAATTACCGCCCCGGCGCAGGATTACCAATCTTGCCGGGCCGGTT 1082342 24 100.0 47 CGGGCCGGTT ........................ TTGGTCTCAGGCGCGCGGTAGCCTTCCAGCTGTACGACCAACTCGAT 1082413 24 100.0 44 CCAACTCGAT ........................ TCCGGAGGAGGCGGCGAAGAGGATGATAGAGTTGGCCAGGCTGG 1082481 24 100.0 43 GCCAGGCTGG ........................ GGCATGATTGGTTGCGCCGGGAGCTCTGGGATGTGATCCGCCA 1082548 24 100.0 46 TGATCCGCCA ........................ CTACTTGGAGTATGCCGGTCAAATTCGGTGGGGCGGACGTCGTACC 1082618 24 100.0 43 ACGTCGTACC ........................ TTTGTTGAAATAATCACCGTAACCCAGGCTTTCCAACCATCTT 1082685 24 100.0 46 CAACCATCTT ........................ ATCGCTTGTCCAACCGGGCTCCTCTATAATTGTCGTCATTAGCTTA 1082755 24 100.0 43 CATTAGCTTA ........................ ACTGGATCATCGATGGGCAGAATGCGGGCGTGTCGGCTATATG 1082822 24 100.0 46 CGGCTATATG ........................ CAAGTCGTCGAGAAGTATTTTGGTCTGCTGAAGCAGTACGGTTTCG 1082892 24 100.0 45 TACGGTTTCG ........................ GTACCACGACATCAGCCATGTGACTGTTGCGCCTAGCTCAATCTC 1082961 24 100.0 44 GCTCAATCTC ........................ ACTTGAATTTCAACAATGTCACCAGCACATATGTCCAGGCTAGG 1083029 24 100.0 44 CCAGGCTAGG ........................ ATTTTTATTCCTCATAAACATGGTCTCAAGGTCAGAACTAAGCC 1083097 24 100.0 43 GAACTAAGCC ........................ AATGGCTCCAAGGGATCGTTCTCTAGACTCCAATTTTTCTAAT 1083164 24 100.0 43 TTTTTCTAAT ........................ TTTGTCGACGGGATCTTGCGACATGCGGTACGCTGCAGTGTCG 1083231 24 100.0 44 TGCAGTGTCG ........................ GCTCCACCGACCAGTACCCATATAGCGTGAACTCTTTCGCCGGA 1083299 24 100.0 40 TTTCGCCGGA ........................ AGTGCGCAGACCCCTGCACAGGCCGGCGTCCTTCACAAAA 1083363 24 100.0 42 CTTCACAAAA ........................ ATGTAGAGCTTGACCGGCGCCCCAGGATAGGGCACCGGGCCG 1083429 24 100.0 51 CACCGGGCCG ........................ TCTGTATCCCGCCGGCGCGTGGAGAAGGCGTTTCTCCACAACGTCGTCCTC 1083504 24 100.0 43 CGTCGTCCTC ........................ TCGAGGACGATGTAGTCGGGATTGCTCGCGTTTATCAGCTTGA 1083571 24 100.0 43 ATCAGCTTGA ........................ CTCGTGGATACTCCAAGCGAAAGAGTTCACGTTATACGGCTAC 1083638 24 100.0 46 ATACGGCTAC ........................ TCCACAAGCCTCACGGCCGTCTTCACGGCGCGGCCCGGTCTGACGG 1083708 24 100.0 46 GGTCTGACGG ........................ GGGATATACTACACGGCCCTGCGCGTCATCGGGAACAAGCGCATGG 1083778 24 100.0 39 AAGCGCATGG ........................ TATTCCGTAGATTCCGGCGTAAAAGGTCTGGGCGGCGAT 1083841 24 100.0 38 GGGCGGCGAT ........................ CCGTGCACCTATGACTTTCAAGTACTCAAGGACGTTAG 1083903 24 100.0 41 AGGACGTTAG ........................ AACGCTTGGACAAATACCGTACCGCTACCCTCATATTGATA 1083968 24 100.0 CATATTGATA ........................ GGGATATACG ========== ====== ====== ====== ========== ======================== 32 24 43 GAATCTCAAAGAGAGGATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.50%AT] # Reference repeat match suggestion: F [matched GAATCTCAAAAAGAGGATTGAAAG with 95% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [355,213] Score: 0/0.18 # # Final direction: F [5,0 Confidence: HIGH] >NC_016070 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 1103070 24 100.0 42 AGAAGGCCCG ........................ TCAAATTCACAATCAACTTTCTACTGAACTTCCCGTCATGGA 1103136 24 100.0 46 CCGTCATGGA ........................ GCGCGCTGTATACAGCGCGCCTTTCGCGGCAGATATCGCCCTCAGC 1103206 24 100.0 45 CGCCCTCAGC ........................ CTTCGTCGAGAAGTCCTCGACGCTCAGAGACATATTCTACAACAA 1103275 24 100.0 44 TCTACAACAA ........................ CTTCTTACTTCCTCAAGTCTCCTGGCTATCTCCTGAATTTTTTC 1103343 24 100.0 44 GAATTTTTTC ........................ AGGCTACGCGATGTGCTAATTCAGTTGCGCGACGTGGCCGACTC 1103411 24 100.0 45 TGGCCGACTC ........................ TCGACGACGATGAAGTCCGGATTGCTCGCGCTTATCAGCCTGAAC 1103480 24 100.0 49 CAGCCTGAAC ........................ GTAGATCTCGACTGCCACCGCCGGCTTGGCGCCGCGCCACGTGTAAATT 1103553 24 100.0 43 CGTGTAAATT ........................ GGATAGACACGGCGGAAGCAATATGGACATCTGATCTCATCGA 1103620 24 100.0 39 ATCTCATCGA ........................ CTTTTATACATCTTTCTTTTTCGGCTATGTGCGACAACT 1103683 24 100.0 44 TGCGACAACT ........................ TCTAGCTCAACTACCTTTTCGCCCATGTCCAAAGGCCCAGACCT 1103751 24 100.0 40 GCCCAGACCT ........................ AACAATAATGATATCGTGTGCAAAGATAGACAAAAGCGGC 1103815 24 100.0 46 CAAAAGCGGC ........................ CTTGGGCGTTGGAGCGGACAGAGCCCGCGCGCTCTTGAGGGAGAGG 1103885 24 100.0 40 GAGGGAGAGG ........................ CTTCCTCACTGCGCACTCTCTCGTACTTGCACAGTTTGGC 1103949 24 100.0 43 ACAGTTTGGC ........................ ACCGCCAGCTTGAGCATGTGCGTAGTCCCGCCGGTCTCCCACG 1104016 24 100.0 55 GTCTCCCACG ........................ TCTGGTGGAACCATAAACGGCAAAACCAATTCATCGTCCCAGACTTTGATTTTGT 1104095 24 100.0 TTGATTTTGT ........................ TCCATTGGCG ========== ====== ====== ====== ========== ======================== 16 24 44 GAATCTCAAAGAGAGGATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.50%AT] # Reference repeat match suggestion: F [matched GAATCTCAAAAAGAGGATTGAAAG with 95% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [349,96] Score: 0.18/0.18 # # Final direction: F [5.45,0 Confidence: HIGH] >NC_016070 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 225270 24 100.0 42 TCTATATCCC ........................ AATAGCTGGATGGGGATTGGCGCATGCGCTTGGCTGGAACCC 225336 24 100.0 44 GCTGGAACCC ........................ CTTGCTCATAGTCGAAGCAATACATCTTGGGACGGCGACCTCCT 225404 24 100.0 42 GCGACCTCCT ........................ CTCGACTGCGTCGAACTTCATATCGCGCTCAACGCGCACGTA 225470 24 100.0 41 CGCGCACGTA ........................ CGCTCGGTTGGACACGTGGACTCGATAGCTTGGCGCATCTG 225535 24 100.0 43 GGCGCATCTG ........................ AGATCCATGTGCCGATCTTCGTGTTGCCCGTCTCGTCGAATAT 225602 24 100.0 44 CGTCGAATAT ........................ ATAACAAGATCAACCTTGTCGCCAATGAGCTCGCTAAGCAAGGG 225670 24 100.0 39 TAAGCAAGGG ........................ GAGAACATCGCAATAAAGATAACGGAGGAACAGCTACGC 225733 24 100.0 43 ACAGCTACGC ........................ CGCCGTACTTCTTCAGCACCTCCTTCACCCGTTCCTTCAGAAA 225800 24 100.0 45 CCTTCAGAAA ........................ GTGCAGATATGTGAACAAGCCGTACGCGAAGCCGGTCAGGATAAG 225869 24 100.0 42 TCAGGATAAG ........................ GGTCCGTCTCGATTCGGGATTGGCTGTGATAGTGACAAAAGA 225935 24 100.0 44 TGACAAAAGA ........................ CAGAAGAGCTCGAACTTTACGACCTTGCGTCCGATATATTCGTA 226003 24 100.0 41 TATATTCGTA ........................ GGCGATTTCAAATACCGCTATGAGGCGATATCCTACTGGGT 226068 24 100.0 50 CCTACTGGGT ........................ GAGTAGAGGTACCCTCCGTCGACGACCGCCCCCTGCGTGATGCTCAGTTG 226142 24 100.0 43 TGCTCAGTTG ........................ AGGTGTAGTCGGTATAGCTGATGCCGTTGCACTGCACCTGGTA 226209 24 100.0 42 GCACCTGGTA ........................ ACGATCTCGCCATGCTTGAGACGAAGCTTAGGTTGGGCTTTC 226275 24 100.0 44 TTGGGCTTTC ........................ TGGAGCGTATTTCGCAATACGAGGATGCCGCACATATATCCAAT 226343 24 100.0 42 TATATCCAAT ........................ AGCAATCCGCCGCGGGTCGGCGCATGCCAACACAGCGTCCAA 226409 24 100.0 41 CAGCGTCCAA ........................ AATTGGAGGGAAACCACGGCCGTGCTGACAGACGCCGGCAA 226474 24 100.0 42 ACGCCGGCAA ........................ CCTGTATTGCCGGCCGTCCGGCCCCTCCACGACGAAGAAGTT 226540 24 100.0 45 CGAAGAAGTT ........................ ATTGCTGATAGTGTTCCTGCTAGTTGTCATTTGGCCTATACTAAG 226609 24 100.0 46 CTATACTAAG ........................ CCAGAGTGCTCGATGAGGCGGGCATAGACAGGTACTCCATCACCGA 226679 24 100.0 42 CCATCACCGA ........................ GTATAGCCGCTCACAGGGGTGAACGATACAGACTGTGCGCCG 226745 24 100.0 40 CTGTGCGCCG ........................ TGTTTAGGGAGAAGATTAGGGAGAAAAATTGAAAGAGAAA 226809 24 100.0 43 GAAAGAGAAA ........................ ACTATCTCGATGTGAACAACATATGCATCAATGTCGGCGCCGG 226876 24 100.0 TCGGCGCCGG ........................ CGGGTATTGT ========== ====== ====== ====== ========== ======================== 25 24 42 CCTTCAAATCTCTATCTGAGATTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.50%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [76.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [57,1639] Score: 0.18/0.18 # # Final direction: F [0.27,0.18 Confidence: LOW] >NC_016077 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1011010 36 100.0 30 NNNNNNNNNN .................................... TCCAGTTTTTGGGGTACACATCAGACTTCT 1011076 36 100.0 30 NNNNNNNNNN .................................... TGCGCAAGCGTCTGTCGCGGAGCAAGCTTT 1011142 36 100.0 30 NNNNNNNNNN .................................... TGAATACGGCATTGACATTGACACCGATAC 1011208 36 100.0 30 NNNNNNNNNN .................................... AGCTGTGCAATCCTTGTCGGATGGCTGGCG 1011274 36 100.0 29 NNNNNNNNNN .................................... CGGGTCAAAGAATCTATCGCGGAAATGGG 1011339 36 100.0 30 NNNNNNNNNN .................................... GCCGATGGTAATGGCCTTGCCGGCGGCAAT 1011405 36 100.0 30 NNNNNNNNNN .................................... AAATGCAGCTGAAAAGAATATAATAACACT 1011471 36 100.0 30 NNNNNNNNNN .................................... GTTCATTCATACCCATTGCTTTTACCACTT 1011537 36 100.0 29 NNNNNNNNNN .................................... CTGGATTCTTGGCTAGCATCACGACATGT 1011602 36 100.0 30 NNNNNNNNNN .................................... TTACAAACTGTTTGATTGCCTTATACTGTC 1011668 36 100.0 30 NNNNNNNNNN .................................... GCTGGTCGGTCTGATCTCACCCTTGATGGC 1011734 36 100.0 30 NNNNNNNNNN .................................... AGTTGAGCTCCTGTTCATACAGGCTGATGT 1011800 36 100.0 30 NNNNNNNNNN .................................... GGACTATCTGACGAAGGCGCTGATTGGCTA 1011866 36 100.0 29 NNNNNNNNNN .................................... TTCTCTGCTTGTTACTAATGCTCCTTGCA 1011931 36 100.0 30 NNNNNNNNNN .................................... ATAGGAGGGCATTCGATGAGCCTTGAATGC 1011997 36 100.0 30 NNNNNNNNNN .................................... GATGAGAGATGCTGCTGCTTGCTGGTTTCC 1012063 36 100.0 30 NNNNNNNNNN .................................... CGGCTATTTGCTGATTCGTAAGGCCCCGTT 1012129 36 100.0 29 NNNNNNNNNN .................................... CCCGGCCACTTCAAACCCTTTGGCGTCAT 1012194 36 100.0 30 NNNNNNNNNN .................................... TGATCATATACTCTTCAAAAGCCGTTAAGT 1012260 36 100.0 30 NNNNNNNNNN .................................... CAAGCTCCTGAAGCTCCGGTAAGTTGGCCG 1012326 36 100.0 30 NNNNNNNNNN .................................... TCAAAACCCTCGCCAAAGAGGTCAACATTA 1012392 36 100.0 30 NNNNNNNNNN .................................... CGTCGGCGTCATCCACGGTTTTGCCCTCCC 1012458 36 100.0 30 NNNNNNNNNN .................................... CATCCAGCCCGGGACGAAAATCAAGATTAG 1012524 36 100.0 30 NNNNNNNNNN .................................... GGGTATAGCACTGTGTTACTGCCTATCACA 1012590 36 100.0 30 NNNNNNNNNN .................................... CTTTTTCATTAGCGTATCCGAAAGCTCATC 1012656 36 100.0 30 NNNNNNNNNN .................................... GGTCGGACTGGACGGTTTCGCCCCAGAGAC 1012722 36 100.0 29 NNNNNNNNNN .................................... ATTAAGCCCTTCGGAAAGCTTTTCTGGGT 1012787 36 100.0 30 NNNNNNNNNN .................................... GGAATATCATATCGTCATAGCAGACGATGT 1012853 36 100.0 29 NNNNNNNNNN .................................... CTTAATCTCGCCCCCGAGGAGCCGGTCGA 1012918 36 100.0 29 NNNNNNNNNN .................................... CTTCACCTTCTCCCAATTTTACTACATTT 1012983 36 100.0 30 NNNNNNNNNN .................................... ACAGTTTGGCGAATTCTTCCAGAAGCTTCA 1013049 36 100.0 30 NNNNNNNNNN .................................... TCAACGATGTTCAAAGCCTTGAAATATGAA 1013115 36 100.0 30 NNNNNNNNNN .................................... AGTATGACGCTTTTTCCCAATGGCAATTGC 1013181 36 100.0 31 NNNNNNNNNN .................................... ATATCCCCGAATATATCGTTCCTTATGACGA 1013248 36 100.0 30 NNNNNNNNNN .................................... CATTTTCATCTCTGGTATTAATGGACGTAG 1013314 36 100.0 30 NNNNNNNNNN .................................... AGGATTTCCGTCAGCCACGAGCAATGGTTA 1013380 36 100.0 29 NNNNNNNNNN .................................... CTGCTGTCTGAAATGCGAATGACAATAAT 1013445 36 100.0 30 NNNNNNNNNN .................................... CATGCTCCGCATCGACTGCTGAACGTGGAG 1013511 36 100.0 30 NNNNNNNNNN .................................... TCAAAATCTAGGTTGCGTTTAATGGAATCC 1013577 36 100.0 30 NNNNNNNNNN .................................... ATCTTGCCCGTGATCCGTCGGGCCAACAAA 1013643 36 100.0 29 NNNNNNNNNN .................................... CTTAACCACAAAAATGACCTTTAGGAGGT 1013708 36 100.0 30 NNNNNNNNNN .................................... CAATCTGGCCACGAACAAGCCGCCGACGGT 1013774 36 100.0 29 NNNNNNNNNN .................................... TTCCTGCTGTGTAAGTTTTGATAATGCTC 1013839 36 100.0 29 NNNNNNNNNN .................................... TGATAATAATCTCCGGTGTAGTTTTTGCC 1013904 36 100.0 29 NNNNNNNNNN .................................... TGTCATACTCAGGGTGCTGTTGTTGAATA 1013969 36 100.0 30 NNNNNNNNNN .................................... GAACGCTATGCCGTTGACCTTCACGTTCGA 1014035 36 100.0 30 NNNNNNNNNN .................................... AGTCAGTAAGGCCAAAGAGCTGCAGTCTCA 1014101 36 100.0 30 NNNNNNNNNN .................................... CGCTGTCGCTGACTCCGTTCTGGCGTCTGA 1014167 36 100.0 30 NNNNNNNNNN .................................... ACTTGCCACGCAAGTTCCAGACTTCAACAT 1014233 36 100.0 30 NNNNNNNNNN .................................... AAACATCGGACACAGAGCGCTTGGCCGCGT 1014299 36 100.0 30 NNNNNNNNNN .................................... CGACGTTGACGTCAGCGATTTGCCTGACTG 1014365 36 100.0 30 NNNNNNNNNN .................................... AATGAAAGTCAAAGGGCTCCCCAGGGCCCT 1014431 36 100.0 1 NNNNNNNNNN ..............................CT..G. NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 53 36 29 GTTTGAGAGATATGTAAATTCAAAGGATAATCAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.22%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [58,110] Score: 0/0.18 # # Final direction: F [0.68,0 Confidence: HIGH] >NC_016109 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 613140 28 100.0 33 CGAGGGCGCG ............................ ACCACGCCCGCCCGTCGTCGCCCCAGATGTCCG 613201 28 100.0 33 CAGATGTCCG ............................ CCGACAACCCGGGGGAAGACGGCGCGACGCCGA 613262 28 100.0 33 GCGACGCCGA ............................ CGACCTGGACGCGGTGCGCGCCGCGTTCGCCGC 613323 28 100.0 33 CGTTCGCCGC ............................ CAGCACTGCGTCCTGACCTACAGGGTCAACCTG 613384 28 100.0 33 GGTCAACCTG ............................ CTGGTGTCGATCAGGTCGGCAGCCTCGCCGAGG 613445 28 100.0 33 CTCGCCGAGG ............................ TGCTGTGGAACTGCTGCGGCACCCACGGCTGGA 613506 28 100.0 33 CACGGCTGGA ............................ GGCGTCGGTGGCGAGGAGTTCGGTGGGGGTGAG 613567 28 100.0 33 TGGGGGTGAG ............................ TCGGCGAGGGTGTGCTGGGCGTCGGCGTAGGCG 613628 28 100.0 33 GGCGTAGGCG ............................ ATCACGCCGCGGGTCCGCAGCTCCGCGAGCAGG 613689 28 100.0 33 CGCGAGCAGG ............................ CCCACTAGAGCGAGCACGACTTCGCGGTCCCGG 613750 28 100.0 33 GCGGTCCCGG ............................ ATGACGACCGGGTCGGCCAGCGACCCGGATCCG 613811 28 100.0 CCCGGATCCG ............................ GCTGCGGTTT ========== ====== ====== ====== ========== ============================ 12 28 33 GAGCAACCCCCGCGAGCGCGGGGCCGAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.40,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [20.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [135,11] Score: 0.18/0.18 # # Final direction: F [0.55,0.27 Confidence: MEDIUM] >NC_016109 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 623530 28 100.0 33 NNNNNNNNNN ............................ TTGACGTGGATTCCATCAGACGTGTGTCGACGT 623591 28 100.0 33 NNNNNNNNNN ............................ CGGGACGGCCGAGGGGAGGACGTCGTGTCCCTC 623652 28 100.0 33 NNNNNNNNNN ............................ CGGTCGTGGTGCCGGAGACGGTGATGCTGGGGG 623713 28 100.0 33 NNNNNNNNNN ............................ CCAGCAGGCGGCCGGAGCCGAGCGCGACGCCTA 623774 28 100.0 33 NNNNNNNNNN ............................ ACGTGTCCAGCGTAGGCCCAACTGGGTTGTGAT 623835 28 100.0 33 NNNNNNNNNN ............................ CTGCCGTTGCAGGCGTAGCACGGGGGTTCGTCG 623896 28 100.0 33 NNNNNNNNNN ............................ CCGGCTGCCGCCGCTGGTGAAGGTGAAGCCGAT 623957 28 100.0 33 NNNNNNNNNN ............................ GACCGACATGGCCCGTGAGTTCGCAGTCCGGCA 624018 28 100.0 33 NNNNNNNNNN ............................ GCAACCGGGGCGGTTGTCGTGACGGAGAAACGT 624079 28 100.0 33 NNNNNNNNNN ............................ CCGGCCCGGGATCCACGTCGAGGACATCGTGAA 624140 28 100.0 33 NNNNNNNNNN ............................ CCGGGACAGCGGCGGCCGGGGCTGCGGGCTGCT 624201 28 100.0 33 NNNNNNNNNN ............................ GTCGGCCGAACACCGCGCGGCCACCGGCAAGGA 624262 28 100.0 33 NNNNNNNNNN ............................ GTTCGACCACCACCCTCAGGTAGCGGCTGCCGG 624323 28 100.0 33 NNNNNNNNNN ............................ GCCGAAGCCGCGCTCATCGCCGCCCACCGCCTC 624384 28 100.0 33 NNNNNNNNNN ............................ GGGCGTGTACCCGGAGGCCGGGCTGCAGATGTC 624445 28 100.0 33 NNNNNNNNNN ............................ CCGGGAGCCGCGGCAGGAGATGGTCAGCCGGGC 624506 28 100.0 33 NNNNNNNNNN ............................ TCGCTGCTGGCGGCGCGGCGATTCAACCCACCG 624567 28 100.0 33 NNNNNNNNNN ............................ GGGCGTGTACCCGGAGGCCGGGCTGCAGATGTC 624628 28 100.0 33 NNNNNNNNNN ............................ CCGGGAGCCGCGGCAGGAGATGGTCAGCCGGGC 624689 28 100.0 33 NNNNNNNNNN ............................ GGGTCTCGCGATCCTGGCCAGGATCGGACTCGT 624750 28 100.0 33 NNNNNNNNNN ............................ CCGGCCCGGGGCGCCCGCCGCCGGGGCGGAGAG 624811 28 100.0 33 NNNNNNNNNN ............................ TTCTGTCACACAGATGGCATATTCGCGGGGCAT 624872 28 100.0 33 NNNNNNNNNN ...............A............ CTCGGCGAGGCGGGCGGACGTCATGCGGACGAG 624933 28 100.0 33 NNNNNNNNNN ............................ CGCGGTGGACAGGCTGACCACGCTGGTGGGTGA 624994 28 100.0 33 NNNNNNNNNN ............................ GCGGGGCACGACCCCGGCCGAGGACAAGGCGTA 625055 28 100.0 33 NNNNNNNNNN ............................ TCGCCCGGCGCCACGCTCAAGGACCTGCTGCTG 625116 28 100.0 33 NNNNNNNNNN ............................ CCGCTGGACCGGGCTCACCGGCGCGCGCCCCGG 625177 28 100.0 33 NNNNNNNNNN ............................ TTCTGGGCGTGCCGGTCTGCCCGACCCATTCCG 625238 28 100.0 33 NNNNNNNNNN ............................ TCGGGAGAGTTGGGGCCGGGCGACCGGCTCCCG 625299 28 100.0 33 NNNNNNNNNN ............................ CCCATCCCCGACGGCCGCGCGCTGTTCCTGGCC 625360 28 100.0 33 NNNNNNNNNN ..................A......... GATCGGCCTCGGCGGGATCGGCGACACCCTGAA 625421 28 100.0 33 NNNNNNNNNN ............................ AGCGGGCCCGCCCCATCCATCCGGTGGACCGCA 625482 28 100.0 33 NNNNNNNNNN ............................ CGATGAGGGCCTGGCGCTCAGCCGGGCTACGGG 625543 28 100.0 33 NNNNNNNNNN ............................ CGGACGAGGGCCCGTGCGGCAACGCCACCCACC 625604 28 100.0 33 NNNNNNNNNN ............................ TACGAACCGAGTAGCGTGACCGGGATGCACCAG 625665 28 100.0 33 NNNNNNNNNN ............................ CACCGACTTGACGAGGTCGGTCTCGTTGACGTC 625726 28 100.0 33 NNNNNNNNNN ............................ CCGTGGCCGGCTCTTGTCCGGCATCACCCAGGC 625787 28 100.0 33 NNNNNNNNNN ........T................... CATCTCCTCTTGCTCGTGACGAGTGGTCAGGCC 625848 28 100.0 1 NNNNNNNNNN .........................G.. NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 39 28 33 CTCGGCCCCGCGCTCGCGGGGGTTGCTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.40] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [159,129] Score: 0/0.18 # # Final direction: F [0.68,0.37 Confidence: LOW] >NC_016110 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 134232 29 100.0 32 CCCGGGTGGT ............................. TTGACAACGGACTTCCAGCGCTTCGGATACGC 134293 29 100.0 32 TCGGATACGC ............................. ACGCCTGCAGCAGGTACGTCGTCCCCGCCTTT 134354 29 100.0 32 CCCCGCCTTT ............................. ACAAGCGCACGTTCCCGGTCCGCGTACGTGAT 134415 29 100.0 32 CGTACGTGAT ............................. ACCGCCCCGCCGGTCCCCGGACAGCTCGGCAT 134476 29 100.0 32 AGCTCGGCAT ............................. TCCTTGAAGTCCACGCCGTGCCGGTCGGAGGG 134537 29 96.6 32 GGTCGGAGGG C............................ AGCGGGCAGTGGTAGCGCATTGTCGGGCCGTA 134598 29 100.0 TCGGGCCGTA ............................. ACTGCGCGACC ========== ====== ====== ====== ========== ============================= 7 29 32 GGGGCCATCCCCGCGTGCGCGGGGAGCAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [3,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [23.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [401,236] Score: 0/0.18 # # Final direction: F [0.78,0.27 Confidence: MEDIUM] >NC_016109 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 7273038 28 100.0 33 TCAGGTCTGC ............................ GGCACAAGAGAGGGGCCGGCGGCTACCGGCCCC 7273099 28 100.0 33 TACCGGCCCC ............................ GCCTGTCGTCAGAACGTGCATACCGTCCAACGG 7273160 28 100.0 33 CGTCCAACGG ............................ GCGGTCGAACACGCCGTCGGTCTGCGCGCGCCG 7273221 28 100.0 33 GCGCGCGCCG ............................ GCAACTACCAAGCGGGCCACCGCACCCACGCCC 7273282 28 100.0 33 ACCCACGCCC ............................ GTCAGCGGGCGACTTCCGCCCAGCATGTTGTCA 7273343 28 100.0 33 CATGTTGTCA ............................ AGTGCAGCAGGCGGTCCGCGGTGCCGGGCGCGA 7273404 28 100.0 33 CCGGGCGCGA ............................ GGGGATCTGCGGGAGGCCGTCTATCCAGGTCTT 7273465 28 100.0 33 TCCAGGTCTT ............................ GGTAGTGATCACGAGGCCGAGCCAGGTGGTCAT 7273526 28 100.0 43 AGGTGGTCAT ............................ GGCGATCCAGCGCATGCTGCGGTCGCCGCCGAGGCCCTGGGCC 7273597 28 100.0 33 GCCCTGGGCC ............................ GGGCATCGGCGGCGCGATGGAGCAGGAGCCCAT 7273658 28 96.4 33 AGGAGCCCAT ............T............... GGGATTGGGTGCGCCCCCCGGTATGCACCACAG 7273719 28 100.0 33 TGCACCACAG ............................ GGCGACGCCGCGGGTCCGGATCACCGCGACGTA 7273780 28 100.0 33 CCGCGACGTA ............................ GGACGCCTACCGCACCGTCGCCGCCCAGCTCCG 7273841 28 100.0 33 CCCAGCTCCG ............................ GCACGTCCGGACGCTGGCGCACTCGACGTACAG 7273902 28 100.0 33 CGACGTACAG ............................ GTGCTCCAGCCAGTACGGCAGCCACTCGGAGAG 7273963 28 96.4 ACTCGGAGAG ................T........... GACGCCGACCGCGCCCAGGAGGAGCTGGTCCGC ========== ====== ====== ====== ========== ============================ 16 28 33 GTCCTCCCCGCGCGAGCGGGGGTCTACC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-13.40,-12.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [33.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [84,759] Score: 0.18/0.18 # # Final direction: F [1.05,0.55 Confidence: LOW] >NC_016110 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 144274 29 100.0 32 NNNNNNNNNN ............................. CATCGTGAAGATCCTCGGTCGGGAGCCTGCCG 144335 29 100.0 32 NNNNNNNNNN ............................. TGCGGCGCGTCATCCTCCGGGAGCGCGCCGCC 144396 29 100.0 32 NNNNNNNNNN ............................. TGCCGACCGACGCCTGGTCGGCCGGTTCGCTC 144457 29 100.0 32 NNNNNNNNNN ............................. GTCACAGTGACGCCACCAAGGGGCCCAGAAGA 144518 29 100.0 32 NNNNNNNNNN ............................. GCGGCACGTGGTCACAGGCCTCGTCCCAAGCG 144579 29 100.0 32 NNNNNNNNNN ............................. TGCACGACCTGGTCGTGGGACGTGACCCGGCT 144640 29 100.0 32 NNNNNNNNNN ............................. CACCTGCGGGGCTCGCTGGTTTTCCGGACCGG 144701 29 100.0 32 NNNNNNNNNN ............................. CCGAGCCCGTCCCGGCCGATCCGTAGGAATGC 144762 29 100.0 32 NNNNNNNNNN ............................. GCCGGCGGCTCCTGGTACGCAGGGCTGGTGCA 144823 29 100.0 32 NNNNNNNNNN ............................. TCCGACCACGCCGAAACGCAGGTCCCCGGCGG 144884 29 100.0 32 NNNNNNNNNN ............................. GCCGGCGGCTCCTGGTACGCAGGGCTGGTGCA 144945 29 100.0 32 NNNNNNNNNN ............................. TCCGACCACGCCGAAACGCAGGTCCCCGGCGG 145006 29 100.0 33 NNNNNNNNNN ............................. GCCACCAAGTCGTCCGACGGGCAGACCCGCTCG 145068 29 100.0 32 NNNNNNNNNN ............................. AGCTTGGCGTAGGTGCCTTCGCCGGGTCCGAC 145129 29 100.0 32 NNNNNNNNNN ............................. ACCGCCGCGAACATGACCAGCTGCCCGATGAT 145190 29 100.0 32 NNNNNNNNNN ............................. TACAACACCCGAGGACTGATCCAGGTCAAGAA 145251 29 100.0 32 NNNNNNNNNN ............................. GACGGAGCGATCGGCCGGTACCGGTTGAAGGG 145312 29 100.0 1 NNNNNNNNNN ...T............AC......C.... NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 18 29 32 GTGCTCCCCGCGCGTGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [53.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [94,26] Score: 0.18/0.18 # # Final direction: F [0.86,0.37 Confidence: MEDIUM] >NC_016110 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 44725 29 96.6 32 GTGACGACCA ......T...................... GACCCTGGGCGCCCTGTAGGGCCCGCTGACGC 44786 29 100.0 32 CCGCTGACGC ............................. ATGCAGATGAGCGCGTCGGCGCACGCGGCATG 44847 29 100.0 32 ACGCGGCATG ............................. AGCAAGGTTCGCAACCGATCGGAGAAGCTCGG 44908 29 100.0 32 AGAAGCTCGG ............................. GTCATCATCACGCCGCGCACGGCGGCGTTGTC 44969 29 100.0 32 CGGCGTTGTC ............................. GCGTTCGTCGGCGCCCTGGTCCTCACCGCCCC 45030 29 100.0 TCACCGCCCC ............................. TCTTGCTGAAC ========== ====== ====== ====== ========== ============================= 6 29 32 GGGACCATCCCCGCGGGCGCGGGGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [4,1] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [35.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [116,224] Score: 0/0.18 # # Final direction: R [0.37,0.68 Confidence: LOW] >NC_016110 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 52231 29 100.0 32 CGGCGGCCCC ............................. GTGTTCGGGTGGCTTCCCGCCCCTGCGTTGTT 52292 29 96.6 32 CTGCGTTGTT ....................A........ GGTCGGTCGCTCCAGACCATCGAGCGCAACGT 52353 29 96.6 32 AGCGCAACGT .......................T..... GAGTGGCGTTTTGGCATGCTGCGGGCCGTGAC 52414 29 100.0 38 GGGCCGTGAC ............................. GCGGTGGACCCGCCAAGCTTGTCAGCGTTGATGGCCTT 52481 29 100.0 32 TGATGGCCTT ............................. ACCCGGAACGTCTCATCGAACGATGCTGCGAT 52542 29 100.0 32 ATGCTGCGAT ............................. TCACATCCCCGGCAAGCGGCCCAAGATCTACT 52603 29 100.0 32 AAGATCTACT ............................. CGCTCGACGACGATGCCGAGTTCGGTGTTGGA 52664 29 100.0 32 CGGTGTTGGA ............................. ATACCGGCGACGGGGTACCACGCGGCGAGGGC 52725 29 100.0 32 CGGCGAGGGC ............................. ATCCGGTGTCCGGACCCGAGGTGGCGTCCTCG 52786 29 100.0 32 GGCGTCCTCG ............................. GGGAGCTGCGCAACGACTTCGACGATGCGCTT 52847 29 100.0 CGATGCGCTT ............................. TCTTGCTGAA ========== ====== ====== ====== ========== ============================= 11 29 32 GGGACCATCCCCGCGGGCGCGGGGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [4,1] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [13.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [307,115] Score: 0.18/0.18 # # Final direction: R [0.55,0.68 Confidence: LOW] >NC_016111 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 643614 29 100.0 32 NNNNNNNNNN ............................. TGGGGTATGTGTGTCCCACTCCGCCAGGTCGA 643675 29 100.0 32 NNNNNNNNNN ............................. AACCGAGGGCGGCGCATGCCACCCGTGCGATC 643736 29 100.0 32 NNNNNNNNNN ............................C ATCGCCACCCGGCCCCGCACGCACGAGCGCGT 643797 29 100.0 1 NNNNNNNNNN ...........G.........T...GT.. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 4 29 32 GTCGTCCCCGCCAGCGCGGGGGTAGCCCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-12.20,-13.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [159,154] Score: 0/0.18 # # Final direction: R [0.68,0.74 Confidence: LOW] >NC_016112 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1516465 37 100.0 34 NNNNNNNNNN ..................................... GAAAATATAAAGCCTAAACTGCTGGCCCTATCGG 1516536 37 100.0 34 NNNNNNNNNN ..................................... ATGACAACTCAAACAGCAAATCAAGTAAAACCGC 1516607 37 100.0 34 NNNNNNNNNN ..................................... TTTTATCGCCACGCCCAGTTGCGGAGGACACGGA 1516678 37 100.0 34 NNNNNNNNNN ..................................... CCAATTTCCCTGCGCCATGTATGAAATTGAAAAT 1516749 37 100.0 34 NNNNNNNNNN ..................................... TCACCTAACCAATGCGACATCGTTCGAAGAATCG 1516820 37 100.0 34 NNNNNNNNNN ..................................... AAAGTATCAGCATGAGCGCCCCCGGAAGCGAGAA 1516891 37 100.0 35 NNNNNNNNNN ..................................... ATGCCATCGACGATGCCGGGGAGGTTACGCATTTT 1516963 37 100.0 34 NNNNNNNNNN ..................................... GTGCCAATTTTGACAATTTTGTGCATCAAGCGGT 1517034 37 100.0 33 NNNNNNNNNN ..................................... TAGTTAGTGGCGTTGTGAGTTACTGAAATGGAG 1517104 37 100.0 35 NNNNNNNNNN ..................................... ATTCAAAAGCCTGTGCGAGCTGCCGGAATTCGAAC 1517176 37 100.0 34 NNNNNNNNNN ..................................... ATAGTTCGCGGTTTTGGTTTGAAAATGAACGGGC 1517247 37 100.0 34 NNNNNNNNNN ..................................... CTTGGATTGGCATGATTTGTCCTATTGCATTGTT 1517318 37 100.0 34 NNNNNNNNNN ..................................... GTCCATGACCTGGCTTTCTACGAATACGATGTTC 1517389 37 100.0 35 NNNNNNNNNN ..................................... CTTTCCATGGGTTGCCTTGAGGATCGATTCCGTTT 1517461 37 100.0 34 NNNNNNNNNN ..................................... AGGCTGGAAGTCGAAGTATTGAGAGAAAAGACCG 1517532 37 100.0 32 NNNNNNNNNN .......................AGCG.AT.GA..C. TGTTGTCGTGTAGCGTCAGGCATCGCTGCATT 1517601 37 100.0 34 NNNNNNNNNN .......................AGCG.AT.GA..CG CGGGGAATTTTGAATCTTTGTGCGCGTTTTCCAG 1517672 37 100.0 33 NNNNNNNNNN .......................AGCG.AT.GA..C. TGTTGTCGTGTAGCGTCCGTTCATCGCTGCATT 1517742 37 100.0 34 NNNNNNNNNN .......................AGCG.AT.GA..CG CGGGGAATTTTGAATCTTTGTGCGCGTTTTCCAG 1517813 37 100.0 35 NNNNNNNNNN ..................................... ATTCGTGGCTTGCATAGAGTTGGCACGGAATCAAG 1517885 37 100.0 36 NNNNNNNNNN ..................................... CGAAAAGTTGCCGGATTGATAGCTGTAGCGCTTCTG 1517958 37 100.0 35 NNNNNNNNNN ..................................... ATTTACAAGATTTCATCGTAGTTAAAGGCATTTGT 1518030 37 100.0 35 NNNNNNNNNN ..................................... AATAAATCGAGCTGGGCGAACTGCCCGATTGCCTG 1518102 37 100.0 34 NNNNNNNNNN ..................................... CCCAGGGATGCGGACTAGATTTAACTATCTAATT 1518173 37 100.0 35 NNNNNNNNNN ..................................... CACCGATCGTCCCCTCTCCGCGCGCGTGGATGATC 1518245 37 100.0 34 NNNNNNNNNN ..................................... ACACCATGCCGATTGTGTGTTATTACATTGAAGA 1518316 37 100.0 35 NNNNNNNNNN ..................................... TTCTAACAGCGGTTCATAAATATTTTCAGAAACAG 1518388 37 100.0 35 NNNNNNNNNN ..................................... ATCAATATTTCTGCTAGATTTTAATCTGTGTGGCT 1518460 37 100.0 35 NNNNNNNNNN ..................................... GATCCGGCACCGTCACGCATTTGCAACAGCGTATC 1518532 37 100.0 36 NNNNNNNNNN ..................................... GCTGGTGATATCCGGGCGTTTGTCCGGAGCGTTGCT 1518605 37 100.0 36 NNNNNNNNNN ..................................... AACCTTAAAGCCTGCGCGGCGACTGAGCGCATCAAA 1518678 37 100.0 34 NNNNNNNNNN ..................................... AGGTGAAGGAGGCTGAAGATGCCAGGGTTTATGA 1518749 37 100.0 35 NNNNNNNNNN ..................................... GAATATACGGATCCGCTCACTTTCGAGCAGAAATC 1518821 37 100.0 37 NNNNNNNNNN ..................................... GGCAATGTTGGCGTCGGTCAGCACCGAGTCGATGCGT 1518895 37 100.0 34 NNNNNNNNNN ..................................... GTGTCGGACCCGTTCAATGCCGACGTATTGCCGC 1518966 37 100.0 34 NNNNNNNNNN ..................................... TTTCGCGGACCGTCGACAGCGCCGCAATCTACGC 1519037 37 100.0 34 NNNNNNNNNN ..................................... TAAGTATCGTCGGCGTTTTGATTGATAAAATATC 1519108 37 100.0 35 NNNNNNNNNN ..................................... AAATCGGGGCGACGTATTATTTCGCGTTTGAAGCG 1519180 37 100.0 35 NNNNNNNNNN ..................................... ACCTCGCCCAGCAACGCGACGGTCTATTTCGAGGG 1519252 37 100.0 36 NNNNNNNNNN ..................................... ATTTCAACCCTCCAGCTTAAAGCGTAAAAATACCGT 1519325 37 100.0 33 NNNNNNNNNN ..................................... CTTCCGGTTTTTGCACGATATGCGCTAACCAAT 1519395 37 100.0 43 NNNNNNNNNN ..................................... AATAAAGGCGATACGAACGAAAACCGGCCAGCGGCGGGGGGAG 1519475 37 100.0 35 NNNNNNNNNN ..................................... AAGCGCGTTCGGCGAGGCCGCCGGCAGTATCCTGG 1519547 37 100.0 34 NNNNNNNNNN ..................................... CAGGTGGTCAGGCGCGGATTGACGGCAGCGCGGA 1519618 37 100.0 1 NNNNNNNNNN ..................A....A.AAAT..A.TT.A NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 45 37 34 GTATCTCCCGGCCAAACAGCCGGGAGCGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [10,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-13.90,-14.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [182,267] Score: 0/0.18 # # Final direction: F [5.28,0.64 Confidence: HIGH] >NC_016112 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 2435093 32 100.0 33 TCAAATGTGT ................................ GTACTCGATGCCCAGTTTCGTGTTCGCGTCGGG 2435158 32 100.0 32 TCGCGTCGGG ................................ CGCTGGAGCAATCGCAGCAATTGGGATGGCAG 2435222 32 100.0 32 GGGATGGCAG ................................ CAGTCGACTCCTTGCGTCGATGCTCCTGTGTC 2435286 32 100.0 32 CTCCTGTGTC ................................ AGCGTTTCCTCGTTCTCTTGACCCGTATTTGC 2435350 32 100.0 32 CCGTATTTGC ................................ GTATCTCCTATGTATGGATACCCATCAGTCAG 2435414 32 100.0 32 CATCAGTCAG ................................ GATCGCCCTGTGATCTGTGTTAACGTCAAATT 2435478 32 100.0 33 ACGTCAAATT ................................ CAGCGATTCGGCGCGTGTCGCAGATGTCTTGAC 2435543 32 100.0 33 ATGTCTTGAC ................................ GTAATATAACTTCTACTGCTGTCAATTACGCTA 2435608 32 100.0 33 AATTACGCTA ................................ GGCTACGACTGGCACATGATCGTCGACAACTGG 2435673 32 100.0 32 CGACAACTGG ................................ TTCGGCGCTTGGCCGAAAAGCACGGTATTACA 2435737 32 93.8 29 CGGTATTACA ..........................G...C. GTTTGGATTAACGCCGTTTCGGCTTTTTT 2435798 32 100.0 33 CGGCTTTTTT ................................ GCCGTGGTGTTCATATTTACTGCGGAGGATTTA 2435863 32 100.0 33 GGAGGATTTA ................................ GCGAGAGGATCCGATGTATCAGGCGGTATTGGT 2435928 32 100.0 32 CGGTATTGGT ................................ CAATGAACCGTTGCCGAAAAACGCATTGGCCA 2435992 32 100.0 32 GCATTGGCCA ................................ AAAATTGGGAGCAAGCAAAAGTGGTTGGATTC 2436056 32 100.0 32 GGTTGGATTC ................................ TTGACGCGCTTCGTCACGGGGTCAGCGCATTT 2436120 32 100.0 32 CAGCGCATTT ................................ TTGATGTCGAGGTTCTTTTTGTTGCGATCTAG 2436184 32 100.0 34 TGCGATCTAG ................................ CGAGAGCCGCCCGGATGCCAGCGCAAATTGGATT 2436250 32 100.0 32 AAATTGGATT ................................ ACGATTAAAGCTATCTATCGGATGGCGGTTGA 2436314 32 100.0 39 TGGCGGTTGA ................................ GAACTGAGCTCAGAACAAACTTATTGGATAGCAGGTTGA 2436385 32 100.0 39 AGCAGGTTGA ................................ CTGATTGTTTTGTTCTCATACCGATACGAAAAATTCGTT 2436456 32 100.0 32 AAAATTCGTT ................................ ATTTTTGAATCCGACGCCTCGCTATTTTCCAG 2436520 32 100.0 33 TATTTTCCAG ................................ CACATGAACGCTGAAAACGCCCTATTGCAATAC 2436585 32 100.0 32 ATTGCAATAC ................................ GCCCGCTAAGATTTCGACATTGCAGGGCGGTT 2436649 32 100.0 561 CAGGGCGGTT ................................ ATGAGCGATCGGCCTCGGTGATGACCCAAAACTTGGTTGTTTCAATCCACGCGCCCGCACGGGGCGCGACTGCCCGTGCGCCTTCGTCGCTGCGGATTGTGTTGTTTCAATCCACGCGCCCGCACGGGGCGCGACCCGTAGCGCCAAATGCATTCAACCTCAATCTGGTTTCAATCCACGCGCCCGCACGGGGCGCGACTCGAAAGGCCTGGAATTCGTCAAAGACTCGGTCGTTTCAATCCACGCGCCCGCACGGGGCGCGACCCGATAAAGCAGGATTCGTCGGCGGTAGTGAGCTGTTTCAATCCACGCGCCCGCACGGGGCGCGACCGCTATTTAATCGATACAGTGCTAGAGGGCGGGTTTCAATCCACGCGCCCGCACGGGGCGCGACGATCGTTTTTGATTGGTGTGCCCTGGTGTAGCGTTTCAATCCACGCGCCCGCACGGGGCGCGACGTCAGTTCGTTTTGCGTCATTCGGCCCTCCGGGTTTCAATCCACGCGCCCGCACGGGGCGCGACTCGTTCGATAAAAGTGAGCGTCGCCGGTCACGACTCCGG 2437242 32 100.0 ACGACTCCGG ................................ TGCATTTACC ========== ====== ====== ====== ========== ================================ 26 32 53 GTTTCAATCCACGCGCCCGCACGGGGCGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.20,-6.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [210,180] Score: 0/0.18 # # Final direction: R [0.74,4.5 Confidence: HIGH] >NC_016112 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 2436719 32 100.0 33 AAACTTGGTT ................................ TGCCCGTGCGCCTTCGTCGCTGCGGATTGTGTT 2436784 32 100.0 32 GGATTGTGTT ................................ CCGTAGCGCCAAATGCATTCAACCTCAATCTG 2436848 32 100.0 33 CCTCAATCTG ................................ TCGAAAGGCCTGGAATTCGTCAAAGACTCGGTC 2436913 32 100.0 34 AGACTCGGTC ................................ CCGATAAAGCAGGATTCGTCGGCGGTAGTGAGCT 2436979 32 100.0 32 GTAGTGAGCT ................................ CGCTATTTAATCGATACAGTGCTAGAGGGCGG 2437043 32 100.0 32 TAGAGGGCGG ................................ GATCGTTTTTGATTGGTGTGCCCTGGTGTAGC 2437107 32 100.0 32 CTGGTGTAGC ................................ GTCAGTTCGTTTTGCGTCATTCGGCCCTCCGG 2437171 32 100.0 39 GGCCCTCCGG ................................ TCGTTCGATAAAAGTGAGCGTCGCCGGTCACGACTCCGG 2437242 32 100.0 ACGACTCCGG ................................ TGCATTTACC ========== ====== ====== ====== ========== ================================ 9 32 33 GTTTCAATCCACGCGCCCGCACGGGGCGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.20,-6.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [35.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1836,180] Score: 0.18/0.18 # # Final direction: R [0.92,4.77 Confidence: HIGH] >NC_016112 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 4283815 29 100.0 32 GCTGAAATTG ............................. GCCAGGTTGTTTTGGTGCGTGCGCTGCGCTTC 4283876 29 96.6 32 GCTGCGCTTC T............................ CGATTTTGAGGCTTAGGCTTGTCTTAGTATTA 4283937 29 100.0 32 CTTAGTATTA ............................. ATAGCTAGTCCCGGCTGGATTTCGGTCGCCGA 4283998 29 100.0 32 CGGTCGCCGA ............................. TTGTTGGCTTCTTCGGACGCGCGCTGTAGCAC 4284059 29 100.0 32 GCTGTAGCAC ............................. CTGCAGCCGCTTTCGCGCTCTCGTCATCCTGG 4284120 29 100.0 33 GTCATCCTGG ............................. GTCATGTTCGCGAACGAACAAGGCCCCTTTTCC 4284182 29 100.0 32 CCCCTTTTCC ............................. ACGCGAGGTGCTCGAATGAAAGGCGTTGGGTC 4284243 29 100.0 GCGTTGGGTC ............................. CACTAATACT ========== ====== ====== ====== ========== ============================= 8 29 32 CGGTTCATCCCCACGGGCGTGGGGAACGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [4,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [55.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [174,1705] Score: 0.18/0.18 # # Final direction: R [0.27,0.59 Confidence: MEDIUM] >NC_016113 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================== ====== 898045 26 100.0 35 NNNNNNNNNN .......................... CTTTGCGCCAGGTCCGCAGACTGCGGGTTTTGGCA 898106 26 100.0 35 NNNNNNNNNN .......................... CTCTCCGCGGCGGAGCGCAGGTGGTCCTCCGCCTA 898167 26 100.0 35 NNNNNNNNNN .......................... CGGTACACGGGGCTACGGACGACTACCGGCAGGCG 898228 26 100.0 34 NNNNNNNNNN .......T............TGT.C. GTGGACGGCCGGGGCGATCGGCGTCGCCGCGCTG 898288 26 100.0 1 NNNNNNNNNN .......GCGAGCGCG....TGT.C. NNNNNNNNNN ========== ====== ====== ====== ========== ========================== 5 26 34 TCGTCCCCGCGAGCGCGGGGGTGTTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-9.30,-9.10] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [448,205] Score: 0.18/0.18 # # Final direction: F [0.86,0.37 Confidence: MEDIUM] >NC_016112 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 4284427 29 100.0 32 AAATAACCTG ............................. GCCAGCGCGCGGAAAACAAAAACGCACGATCG 4284488 29 100.0 33 CGCACGATCG ............................. TTAATAATAGAAATGGCCCGCGTCCGTGAAATA 4284550 29 100.0 32 CCGTGAAATA ............................. TGCTAAAAACAGAAGCTGAAAACCGAAAAGAA 4284611 29 100.0 32 CCGAAAAGAA ............................. CGTCCAGAACCGATCGCACGACCGCAGCCGGA 4284672 29 100.0 32 CGCAGCCGGA ............................. TTGGCTACGGGCATAACCTAGACTCAAAGCCA 4284733 29 100.0 32 CTCAAAGCCA ............................. CTCAGCGGTCGAATCCCAAGACTGGTATCAAG 4284794 29 100.0 32 TGGTATCAAG ............................. CTTGCTAGTGTCCTCGACCGCGTCCGCCAACG 4284855 29 100.0 32 TCCGCCAACG ............................. TTCCTCTTGTGCGGCCGGATTTGCCGGGATGA 4284916 29 100.0 32 GCCGGGATGA ............................. TTCTGCAAATACTCCAACCGCTCCAACAACCG 4284977 29 100.0 32 CCAACAACCG ............................. AAGAATGGTACTACATCGATCAAGCGGTAAGG 4285038 29 100.0 32 AGCGGTAAGG ............................. GCGACCAATGCCGTCTAAATACCAATCCCCAC 4285099 29 100.0 32 CAATCCCCAC ............................. AAATCAAACGCACATGAATTCGTCATTTACAA 4285160 29 100.0 32 TCATTTACAA ............................. GGAGATGAACCGCAAGAGCAAGGCGCTGGACC 4285221 29 96.6 32 GCGCTGGACC T............................ TTTTTATAATGTTTGTTCATGATTCGGTTTGT 4285282 29 100.0 32 TTCGGTTTGT ............................. GATAGCGATTAACACTGCATTGAGCGCTGCCG 4285343 29 100.0 32 AGCGCTGCCG ............................. GACGACGGGTATCGAGCGGACGAATGCGTATA 4285404 29 100.0 32 AATGCGTATA ............................. TCTGTATGCCGGTATATTTTCGGGGATAACAA 4285465 29 100.0 32 GGGATAACAA ............................. CGTGTACTTTCAGCCGTATCTGATGCAAATGG 4285526 29 100.0 32 ATGCAAATGG ............................. GTGGTGTCGTCCAGATCAACATACCAAAGTAG 4285587 29 100.0 32 ACCAAAGTAG ............................. TAGGAAAGCGGCACCCATGCCCACAATAGCAG 4285648 29 100.0 32 ACAATAGCAG ............................. CGCTGATGTTCAATCCAGTCGAGGCGTTGATC 4285709 29 100.0 32 GGCGTTGATC ............................. CCCCAACAGCATGCCAAGCCCTTCTTGAGAAG 4285770 29 100.0 TCTTGAGAAG ............................. TTGACACCCG ========== ====== ====== ====== ========== ============================= 23 29 32 CGGTTCATCCCCACGGGCGTGGGGAACGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [4,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [786,178] Score: 0.18/0.18 # # Final direction: F [0.18,0 Confidence: MEDIUM] >NC_016148 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 256316 30 100.0 33 TATAATAAGG .............................. CGTCCCGTCGCTCACATTGTGGGCACATTACCA 256379 30 100.0 30 CACATTACCA .............................. TGTTTTGGCGCCCGCCACGTTTCGCTATTT 256439 30 100.0 32 TTCGCTATTT .............................. GTTACGCTCACGATAGGCAAGCTCCAGTATTT 256501 30 100.0 33 TCCAGTATTT .............................. ATATTCTTTCGCCCTCAAACCTCAAAGGGCGGC 256564 30 100.0 31 AAAGGGCGGC .............................. AAATAAACTGAGCTTTGTTTAGAGTTTCTTT 256625 30 100.0 32 GAGTTTCTTT .............................. TAGCGCCGGCATGAAGAAGGGCGCCCCTCCTA 256687 30 100.0 35 GCCCCTCCTA .............................. TGCCTCCAACATCTCATATCACTCCTTTTTGTTAT 256752 30 100.0 37 TTTTTGTTAT .............................. TTTCTGTTAACTGTCTAGCCCTGACGAAGACCTCTTC 256819 30 100.0 34 AGACCTCTTC .............................. GTCGCTATCGGATATATTCTTAATTTATCATACG 256883 30 100.0 34 TTATCATACG .............................. TGTGTCAAGCTCTAATGGTAAAGTCTAAATATTC 256947 30 100.0 37 CTAAATATTC .............................. CAGTAAACGTCCCAGCCGTCCTCACGTAGCCACTTGA 257014 30 100.0 35 AGCCACTTGA .............................. AACATTTGGTGCAAGGCGTCATCGATGTCGTTAAG 257079 30 100.0 31 TGTCGTTAAG .............................. ACCTTTCCAAATATTATATTTTATTGTCAAG 257140 30 100.0 33 TATTGTCAAG .............................. TTCAGCGCTGCAAACGGAAGGATATAGGAGACA 257203 30 100.0 34 ATAGGAGACA .............................. CAATATCCAACCTTTTCATCGCTTATGCGGACAG 257267 30 100.0 38 ATGCGGACAG .............................. GCATCCCATCCTTTCCTTTCTTATTGTCAAGGTACGAT 257335 30 100.0 38 AAGGTACGAT .............................. GTGCACTCCTCCGTACCATTTAGATAGTACGGAGCATA 257403 30 100.0 37 ACGGAGCATA .............................. CTGAAAATATTTTTTCAGCGCTGAATATGGGAGAATG 257470 30 100.0 33 TGGGAGAATG .............................. CCTGATTTGTTCCTGATCCAACTGTGGTAATTG 257533 30 100.0 34 GTGGTAATTG .............................. TACTACACCCCATCCTTTCTTATATTTTCTTGTC 257597 30 100.0 38 TTTTCTTGTC .............................. TCGCGCCGATCGGGAGGCGTTGTGAAAAAGAGGAGCCC 257665 30 96.7 32 AGAGGAGCCC .............................T TGTTCTCTCTGTATTGATATCTCCCTTTGGCG 257727 30 100.0 35 CCCTTTGGCG .............................. CCTTGGACAGCCACCACCTTGCCCACATAGGCAAA 257792 30 100.0 CATAGGCAAA .............................. ACTCCTATGC ========== ====== ====== ====== ========== ============================== 24 30 34 GATTCAATCGAACCGATACGGAATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.80,-1.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [96,430] Score: 0.18/0.18 # # Final direction: F [0.78,0.18 Confidence: MEDIUM] >NC_016147 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 3119302 31 100.0 35 NNNNNNNNNN ............................... ACCAGCTCCAGCGTGCTAGCGATTGAGAAGATCAC 3119368 31 100.0 34 NNNNNNNNNN ............................... ACCGCCGGTGGCCGGCCCGGCGAGATCGGCCGCG 3119433 31 100.0 35 NNNNNNNNNN ............................... ATCGCCTGGTGCCGCGCCACTGGCCGTGACGTCAA 3119499 31 100.0 35 NNNNNNNNNN ............................... TCATACGGCAACAGGCTGGGGATGTAGCGGCCATG 3119565 31 100.0 34 NNNNNNNNNN ............................... ACTCCGTGGGCGCGGCAGGCCACGCTGCCTGACT 3119630 31 100.0 36 NNNNNNNNNN ............................... GGCCTGGCCATGTTCTCTGTGCCGCATGACCAGGCG 3119697 31 100.0 36 NNNNNNNNNN ............................... CTGTTCAAGTCCTTCTAAGGGGCCCCGCGATGAAGC 3119764 31 100.0 34 NNNNNNNNNN ............................... CCGCATGCGGCCCGGCTGACGGCCAAGGGCGCGG 3119829 31 100.0 36 NNNNNNNNNN ............................... TGTGCTATGCCGCTGGGCGGCGGATGGGGATGTGGC 3119896 31 100.0 34 NNNNNNNNNN ............................... TGCCGCGGCGGCACGCGCCGGTTCTTCGCCGCCC 3119961 31 100.0 35 NNNNNNNNNN ............................... ATACTATGCCCGATTCCCCGCGCAGATTGTGCGTG 3120027 31 100.0 35 NNNNNNNNNN ............................... TTCATCATGCGGCCGTCTGCGCCGCCGTCGGTCTG 3120093 31 100.0 35 NNNNNNNNNN ............................... GCAATGCCGCGCTTGAGCTTGCCCACGTGTATCGC 3120159 31 100.0 34 NNNNNNNNNN ............................... ACCTTTCCAGCCGTCGGCCAGTACGACATCCGCG 3120224 31 100.0 34 NNNNNNNNNN ............................... GCCGAAGCTGGTCCAACGCTTGCCGGCATCGTCG 3120289 31 100.0 34 NNNNNNNNNN ............................... GCATTCAGCACGGCGGCTGCGACCCAGCAGGCCA 3120354 31 100.0 36 NNNNNNNNNN ............................... ACGACGCTCTCGGTCACCTTTGACGTGGACGGCGAC 3120421 31 100.0 36 NNNNNNNNNN ............................... CGACAAGCAGCCGAAGCACGACTACACGCAGCGAAA 3120488 31 100.0 35 NNNNNNNNNN ............................... TCGACTGTCATGCCGGCATCGCCGGTGCGCAGAGC 3120554 31 100.0 34 NNNNNNNNNN ............................... TCCTTGGCCAGGCTGCGCAAGGCCTGGCGCACGC 3120619 31 100.0 34 NNNNNNNNNN ............................... TCGCCGATCTGGGTCGATGGCCAGCGGCATCCGC 3120684 31 100.0 33 NNNNNNNNNN ............................... GCGTCCAGGTCGTAGAACCGCACGCCAGCCTGC 3120748 31 100.0 34 NNNNNNNNNN ............................... TTCCACGGGTAGGTGATCGGCCCCAGGATGTCGT 3120813 31 100.0 35 NNNNNNNNNN ............................... ATCGTCGGCTACCGGGGCATGATCGACCTTGCGCG 3120879 31 100.0 36 NNNNNNNNNN ............................... TCCCCGAATCCCTCGCCCAGCTCGCCCACCAGCGCC 3120946 31 100.0 33 NNNNNNNNNN ............................... GTGATCTTCTGACCGGTCTCGAACGGCGGCCAG 3121010 31 100.0 33 NNNNNNNNNN ............................... CTGCAACGGCCAGGACGTAGCTTGCATCCACCG 3121074 31 100.0 35 NNNNNNNNNN ............................... TACGACGATGCAGCGGCATCTGACATCACAGAGGG 3121140 31 100.0 35 NNNNNNNNNN ............................... TTCGTATCCGGCAGCCTGGCCGACTTGCCGACCAG 3121206 31 100.0 37 NNNNNNNNNN ............................... AATTTCCCGCCACCTCAGCACTCGCGGTTGCGCCCAG 3121274 31 100.0 34 NNNNNNNNNN ............................... CGCTTCGTCGGCACGACGATGGCGTTCGAGGACC 3121339 31 100.0 35 NNNNNNNNNN ............................... CACGCTCGTTACACGGCCGTCCAGTGCCTGGACAA 3121405 31 100.0 35 NNNNNNNNNN ............................G.. ATTGTGTGCCCATCTGCCTGGCCCAGGCATCGGCG 3121471 31 100.0 33 NNNNNNNNNN ............................... GGTTCCTGGCCCGCCGGCCAAGCGAGTTGCCGT 3121535 31 100.0 35 NNNNNNNNNN ............................... TTCGGTTGATCGAAGGCGGGCGAGGGTGGGGCGGT 3121601 31 100.0 36 NNNNNNNNNN ............................... GCCAGCAGCTTCGCCGTGGCGATGCGCAAGCGGTTG 3121668 31 100.0 34 NNNNNNNNNN ............................... ATCCCATTGCCCTCATGTCACGCCTCCACCGCAT 3121733 31 100.0 34 NNNNNNNNNN ............................... AGGTGCGGTTTGAGGTCGACGGCGACGGCAACGT 3121798 31 100.0 34 NNNNNNNNNN ............................... TGCCAGCAGGCCGGGATCAGCCCTCGCCCCACAG 3121863 31 100.0 34 NNNNNNNNNN ............................... ACCGCCGGCGGCCACGTGCTGCTGATCGGATCCA 3121928 31 100.0 34 NNNNNNNNNN ............................... GTCCTGCCCAAGGCCTCGGCCACGGTCATCGCCG 3121993 31 100.0 35 NNNNNNNNNN ............................... CGCACGCGCGGCACCTCCGCGCACCAGCAGAACAT 3122059 31 100.0 33 NNNNNNNNNN ............................... AAGCGCAGCGTGTTCGACGACATCTGCGCTTTC 3122123 31 100.0 36 NNNNNNNNNN ...C........................... AGTGGCGTATTGACTGCAACATGCGTGCCGATGCAA 3122190 31 100.0 34 NNNNNNNNNN ............................... ATCGTGTGAACCTCGGCCGACTTGTACGCACCAA 3122255 31 100.0 36 NNNNNNNNNN ............................... TACAACTGGCGCTGTGCGATGCATCGTGACGGTCAG 3122322 31 100.0 34 NNNNNNNNNN ............................... CTGCACAGCGCTTTGGAAGGTGACTTTGTGGACT 3122387 31 100.0 36 NNNNNNNNNN ............................... CAACGCGAGAATAGGTTCTCGGGCCGGCCCGTAAAC 3122454 31 100.0 34 NNNNNNNNNN ............................... TCATCAGATGCTCCGGGAGTTTTGGTGTCTGGGA 3122519 31 100.0 36 NNNNNNNNNN .....................T......... CATGCGCTTTCCCGCGCAGTGATCCGCGCGGCGCGC 3122586 31 100.0 34 NNNNNNNNNN ............................... TCGACTGTCATGCCGGCATCGCCGGTGCGCAGAG 3122651 31 100.0 1 NNNNNNNNNN .....................C.C...CCCT NNNNNNNNNN ========== ====== ====== ====== ========== =============================== 52 31 34 GTCGCGCTCTCACGAGCGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [6,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.80,-5.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [50.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [177,49] Score: 0.18/0.18 # # Final direction: F [5.36,0.37 Confidence: HIGH] >NC_016148 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 279012 30 100.0 37 AAGAAAATGG .............................. ACTATGGCTTTGGCTCTTTTATTATAGCCATTATCTG 279079 30 100.0 36 CCATTATCTG .............................. ACTACATTGGCAATTTCTTTTGCTGACTTATTTTTA 279145 30 100.0 37 CTTATTTTTA .............................. GGTTTTTCAACAACTGCAGCTTGGGGCTCTAAACCAA 279212 30 100.0 37 TCTAAACCAA .............................. GGGGCTTTAGGCGCATCCTCCTGGCCCGTGTCACCGT 279279 30 100.0 36 GTGTCACCGT .............................. TCGAACTGTTCCTCAAGCCCCCTTGTGCTGAGCCAC 279345 30 100.0 36 GCTGAGCCAC .............................. GAGCGGTGACGGTGCCAGCTAGCGGGACCACAGCCA 279411 30 100.0 35 ACCACAGCCA .............................. TATGTCAGCGCCATATGTCGAGGATATGCATTTTG 279476 30 100.0 36 ATGCATTTTG .............................. ACGACATAGATGCACTGCTTCAGGAGCTCTTCGATG 279542 30 100.0 35 CTCTTCGATG .............................. ATGAAAATGACATAACCAGATACAAATGAAGGCGG 279607 30 100.0 36 ATGAAGGCGG .............................. TAGACTTCATGCGCGACGACTTCAGTCGTCTGCCCC 279673 30 100.0 36 CGTCTGCCCC .............................. TAGCAATAAGAGAAAGGAGTGAAAAACATGACTCTA 279739 30 100.0 37 CATGACTCTA .............................. ATGCCGTGCGGGCTGAGAGGTGTCGCCGTTCTTTCTA 279806 30 100.0 36 GTTCTTTCTA .............................. TTTGATGTGCGCTACCTGTTTTCCTCCCCAAAACAA 279872 30 100.0 36 CCCAAAACAA .............................. TGATTTTGACGAGGCCATGCTTAACGTTCTTATCTT 279938 30 100.0 35 TTCTTATCTT .............................. CTCCAGCGTCACGACGTGGTAACCGTTGGCGCATG 280003 30 100.0 36 TTGGCGCATG .............................. ATTACTCCTATGGTCTAGAACAGAAGCTCGTACACA 280069 30 100.0 35 CTCGTACACA .............................. TCGACAACAACGCCTGGTACTGGAAGGGGCAGCTG 280134 30 100.0 37 GGGGCAGCTG .............................. AAGGGGCCAAAAGTACCAGTGCTAACAACGCGAAAGC 280201 30 100.0 37 ACGCGAAAGC .............................. TAAATATGCCCGCCGCACCCTCACCTGCTATGGCCAC 280268 30 100.0 36 CTATGGCCAC .............................. ACGCATATTTTGCGGCAATAATACTGTCTGCGGATA 280334 30 100.0 37 TCTGCGGATA .............................. CGCAATATGACCCACAAACCGACACAGTGTCTTTTAT 280401 30 100.0 36 TGTCTTTTAT .............................. TTGCAACAGAATCAGAGTTTTCGCTGTGGTCACATC 280467 30 100.0 38 TGGTCACATC .............................. TTCGTAGCGGATATCAAACTGGCTGAACCCCATAAGCC 280535 30 100.0 37 CCCATAAGCC .............................. GTGGCGTTCGTATGGTTGGCCAAGAGCGGCAAGCTGA 280602 30 100.0 37 GGCAAGCTGA .............................. AGTTCCCGCCTCATTTCCAGTAGCTCCCGCACCGCCT 280669 30 100.0 35 CGCACCGCCT .............................. CTGGCTAGACCTATAATCCTTGAGCATGACGGAAA 280734 30 100.0 35 ATGACGGAAA .............................. CTGCTCCATCTCCCCATCGAGACGGGTTCTTCCAT 280799 30 100.0 36 GTTCTTCCAT .............................. TACATCCTCCTAAGTTTTTTGGTCGGCACGTACTTA 280865 30 100.0 35 CACGTACTTA .............................. ACAGTATGGTAACACCGCAAATCATAAGCATCATA 280930 30 100.0 36 AAGCATCATA .............................. CGGAAAAACAACCTTAGGTAGAATAGTCGCAAAATA 280996 30 93.3 35 TCGCAAAATA ....................A........T AGTGTTTTTATGACCCGACCGATGCCGCGCAAGCA 281061 30 100.0 39 CGCGCAAGCA .............................. TCCAAACACACCTTCCAATCTAAATGTTCAATCTGAACC 281130 30 100.0 36 AATCTGAACC .............................. CCGCTCTATGGCGTCCGGCGGCCAACCGTGTTCATT 281196 30 100.0 35 CGTGTTCATT .............................. ACCAGTTTCGCGTTTTTCTGCGCAATAGCCACCTC 281261 30 100.0 36 TAGCCACCTC .............................. GTGCCCATGCTGCAGAGTGTGCCGGGGCTACTTCAG 281327 30 100.0 37 GCTACTTCAG .............................. GTGCTTGAAGGAATTACGCCTGTTTACGCTTTTTCAA 281394 30 100.0 35 GCTTTTTCAA .............................. TTGTTATCTTTGTTACCTCTCTGCGCGTCCTCTTG 281459 30 100.0 37 CGTCCTCTTG .............................. TTTGTTTCCTTCGCGCAAAGGCCGTGGGCCTATAACG 281526 30 100.0 37 GCCTATAACG .............................. ACAAAAAGGAAAACCCCCTTTATGATCGGGCTAGACC 281593 30 100.0 37 GGGCTAGACC .............................. TGTCGGCGCTTGGGATATCGGATTGCGGCAGCCTTGC 281660 30 100.0 37 GCAGCCTTGC .............................. ACCACCTCGCCCTCCCATGTGATTTTTTCCGGCATAG 281727 30 100.0 36 TCCGGCATAG .............................. TCCAATTCAATTGCCGTGGCGAGTTCAGCCGACAAT 281793 30 100.0 35 AGCCGACAAT .............................. CTGAAATAGTCTTTGACTGTGCCATTAACCACGGT 281858 30 100.0 36 TAACCACGGT .............................. TGTCGAGGATATGCATTTTCCGGGTAGCCCTCTGAC 281924 30 93.3 36 GCCCTCTGAC .....................AT....... CAAGCTGTCACAGAAGCAGTAGGTCAGTGCCTTATT 281990 30 96.7 GTGCCTTATT ......................T....... TGCGGCAGGT ========== ====== ====== ====== ========== ============================== 46 30 36 GTTTTAGACCTTCCTATAAGGGATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.70,-1.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [171,1650] Score: 0.18/0.18 # # Final direction: F [0.78,0.18 Confidence: MEDIUM] >NC_016510 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1679967 36 100.0 30 CAGCGTTTAG .................................... CGCTCTTTTATGTTTTCGTACTCCAAATTA 1680033 36 100.0 30 CTCCAAATTA .................................... TCTTGGTGCTGCCTCCCAATCATCTGCGAA 1680099 36 100.0 30 CATCTGCGAA .................................... TAGTTTTCTGTAATCTTCAGGCGTAATCTT 1680165 36 100.0 30 GCGTAATCTT .................................... AAAGAAAACATCGTTTTTGTTCGCACGCAT 1680231 36 100.0 30 TCGCACGCAT .................................... CTCATTTGTTTCTTTTTTATCTTTATTCAT 1680297 36 100.0 30 CTTTATTCAT .................................... TCAATTTCATTTAATAAATCTCTACATTCT 1680363 36 100.0 30 TCTACATTCT .................................... ATTATAGATTGGCGGATTAGCCTTATGATA 1680429 36 97.2 CCTTATGATA ........................A........... ACTCAGATAG ========== ====== ====== ====== ========== ==================================== 8 36 30 GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [138,524] Score: 0.18/0.18 # # Final direction: F [1.05,0.18 Confidence: HIGH] >NC_016510 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 391875 36 100.0 30 NNNNNNNNNN .A.TATAA............................ TGTTGATGTTAGTGAAGCTTTGAATAATTA 391941 36 100.0 29 NNNNNNNNNN .................................... GCCAGTTGGCACGTTCTTGATCAGTAAGC 392006 36 100.0 30 NNNNNNNNNN .................................... ATCTAATTCCAAAACATTTATTACATCTTG 392072 36 100.0 30 NNNNNNNNNN .................................... GAAAGACGTGAAGTTGAAAAAAATCGGTAC 392138 36 100.0 30 NNNNNNNNNN .................................... GAATACCAGTCGTTCTTCCCTCACCTTGAA 392204 36 100.0 30 NNNNNNNNNN .................................... TAATACTGATTTATTTCGAGTATCGCCCGT 392270 36 100.0 30 NNNNNNNNNN .................................... TGATTTAGGTATTGATTTATCAAAAGACAC 392336 36 100.0 30 NNNNNNNNNN .................................... CGGTAACGTTTGCCCGCTAGTTTATAATAA 392402 36 100.0 30 NNNNNNNNNN .................................... TTATGATGCGTTACAAAAAATGTTTTTAAA 392468 36 100.0 29 NNNNNNNNNN .................................... CATGCAGATGTTTTTCTACAAATTCACGA 392533 36 100.0 30 NNNNNNNNNN .................................... TTAATTGCAGAGATAGATTTTAGATTTTGA 392599 36 100.0 30 NNNNNNNNNN .................................... AAGGTATTTATTTTTTTGAAAAAAACTTAT 392665 36 100.0 30 NNNNNNNNNN .................................... GAAGAAAGATTCAGTATCTAAAAAAGATAT 392731 36 100.0 29 NNNNNNNNNN .................................... GATCAGGATTAACTTATAAATCGGACGAT 392796 36 100.0 30 NNNNNNNNNN .................................... TATTAAAAAATGTTTAGTAATACAACTATC 392862 36 100.0 30 NNNNNNNNNN .................................... AACAAAAAAAAAGGAGGTACAGGATTTGTA 392928 36 100.0 30 NNNNNNNNNN .................................... TTAACCTAAAAAATGACTCAAATAAACATT 392994 36 100.0 30 NNNNNNNNNN .................................... AATTCCTCAAGGTCAATTTTACATTCGATT 393060 36 100.0 30 NNNNNNNNNN .................................... AATCAAAGGTAAAAATAAAATGACTTTACA 393126 36 100.0 29 NNNNNNNNNN .................................... CTGTTAATGCAATTGCAAACGATATAAAA 393191 36 100.0 30 NNNNNNNNNN .................................... TTTTTATTTTATTTATATAAATGTTTTCCA 393257 36 100.0 30 NNNNNNNNNN .................................... AATGTTTTAGCTTCTAACGCTGCATTATCT 393323 36 100.0 30 NNNNNNNNNN .................................... CATTACAGGTTTATAATCAACTGGATTAGA 393389 36 100.0 29 NNNNNNNNNN .................................... TATTAGAAGAAACACGAGCTTGATCCATA 393454 36 100.0 30 NNNNNNNNNN .................................... ACAGGAGTTTCTGAGCAAACCATAGGTAAA 393520 36 100.0 30 NNNNNNNNNN .................................... ACATTGCGTTTCTAACTGAATTAACAGCGC 393586 36 100.0 30 NNNNNNNNNN .................................... CTTTTTTATCTTGATAAGATAATTCAATGT 393652 36 100.0 30 NNNNNNNNNN .................................... GTAGAAATGAAATAAAAACAATTAAATTGA 393718 36 100.0 30 NNNNNNNNNN .................................... AAAGCTTTTGCTTTTGCATTAAATTGATTA 393784 36 100.0 30 NNNNNNNNNN .................................... TAAAAGACTATGTGAAGTGGTTAATGAAGA 393850 36 100.0 30 NNNNNNNNNN .................................... CCTTAAAAACAAAGTGAACTAATGGAAACC 393916 36 100.0 30 NNNNNNNNNN .................................... AGAAGAAGAATTACGTTATCCTGATTTGAA 393982 36 100.0 29 NNNNNNNNNN .................................... CAGTGAACGCCATTACGGCACAATTGACC 394047 36 100.0 30 NNNNNNNNNN .................................... ATAATTGTTAAACCATTAGGACCAGTAACA 394113 36 100.0 29 NNNNNNNNNN .................................... GCAACTCCAGAAGTCATCCTAGAAACAAC 394178 36 100.0 30 NNNNNNNNNN .................................... TATTCACTTCTACATTTCCGCCAAACAAAG 394244 36 100.0 30 NNNNNNNNNN .................................... TAAGAAGCTAAACCAATAATATGAGCTGTA 394310 36 100.0 29 NNNNNNNNNN .................................... GATGTAGAAATACTTAGCGATAATGTACT 394375 36 100.0 30 NNNNNNNNNN .................................... GCCAATTCCGCAAAGAATGAAAACGGCAAG 394441 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 40 36 29 GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.22%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [492,108] Score: 0.18/0.18 # # Final direction: R [0.55,0.68 Confidence: LOW] >NC_016513 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================= ====== 1379006 33 100.0 34 NNNNNNNNNN ................................. AGCCCTTGAACAATTAATGGCAAATGCGTTTCGG 1379073 33 100.0 35 NNNNNNNNNN ................................G ATTAGACGAATTTTATTTGCCAGTAGAAGTAAAAG 1379141 33 100.0 34 NNNNNNNNNN ................................. ACCACTGCGCGGGAAATTGGACTTTTCAATACTT 1379208 33 100.0 33 NNNNNNNNNN ................................. CTACCGGCACCTGGAATTGGTTAGCCAATACCC 1379274 33 100.0 1 NNNNNNNNNN .......T....G.....A.C...T......T. NNNNNNNNNN ========== ====== ====== ====== ========== ================================= 5 33 34 GCAGCCACCTTCAGGTGGCTGTGTGTTGAAACA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [7,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-4.00,-3.80] Score: 0/0.37 # Array degeneracy analysis suggestion: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [71.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [193,340] Score: 0/0.18 # # Final direction: F [0.68,0.37 Confidence: LOW] >NC_016582 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 6571151 23 100.0 37 NNNNNNNNNN ....................... GCCGGGGCGCTGGTCGCCCAGGGGTCGTCGGCCGGAG 6571211 23 100.0 31 NNNNNNNNNN ....................... CCGGGGCCGCCGCCCCAGCCACCGCCGCCAC 6571265 23 100.0 1 NNNNNNNNNN ....................... NNNNNNNNNN ========== ====== ====== ====== ========== ======================= 3 23 34 CGCCGCCGCCCTGCTGGCCGCCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.30,-3.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [21.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [213,473] Score: 0.18/0.18 # # Final direction: R [0,1.19 Confidence: HIGH] >NC_016582 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 725593 35 100.0 19 NNNNNNNNNN .C.G.....T..G...C....C..G...GG...CG GCCTCTTTCTCCTTCTGTT 725647 35 100.0 19 NNNNNNNNNN .C.G...GG...C...C...GC..G.....G..CA GCCTCCTTCTCCGCCTCCG 725701 35 100.0 46 NNNNNNNNNN .C.G.....G..C...C.......G..G..GT.C. TGCTTGGCCTCCTGCTCCGCCTGCTTCTGCTCAGCCTCCTTCTCCG 725782 35 100.0 19 NNNNNNNNNN .C..GGC..G......C.................. TGCTCCTGCTCGGCCTCAG 725836 35 100.0 19 NNNNNNNNNN .C..GGC..G......................... GCCGCAGCCTTGGCTTCGG 725890 35 100.0 19 NNNNNNNNNN ................................... GCCGCAGCCTTGGCTTCGG 725944 35 100.0 19 NNNNNNNNNN ................................... TGCTCCTGCTCGGCCTCAG 725998 35 100.0 19 NNNNNNNNNN .C..GGC..G......................... GCCGCAGCCTTGGCTTCGG 726052 35 100.0 37 NNNNNNNNNN ................................... TGCTCCTGCTTGGCCTCCTGCTCCTGCATGTACTTCT 726124 35 100.0 19 NNNNNNNNNN ...G...GG...CGGC.....T.......CG..C. TGCTCAGCCTCGGCCTCGG 726178 35 100.0 52 NNNNNNNNNN .C.G........C.CAC....T...........C. TGCTCCTTCCGGTACTTCTCCTCTTTCTCCTCCTGCTCCTGCCGGTACTTCT 726265 35 100.0 1 NNNNNNNNNN .C.G........C.CAC....T........T..C. NNNNNNNNNN ========== ====== ====== ====== ========== =================================== 12 35 26 CTTCCTTCTCCTTCTGTTCCTGCTCCTTCTCCTTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [,17] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [39-33] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [48,1403] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_016582 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 9669666 19 100.0 44 NNNNNNNNNN ...G............... GTCGGTGATGGCTGGGATCCGGCCCTGCGGGCCCCGGCGGATGC 9669729 19 100.0 44 NNNNNNNNNN ................... GTCGGTGATGGCTGTGATCCGGCCGTGCGGGCCCCGGCGGATGC 9669792 19 100.0 44 NNNNNNNNNN ................... ATCGGTGACGGTGACCGGGAGGCCCGCCGCGTCGGTGGTGACGT 9669855 19 100.0 1 NNNNNNNNNN ................... NNNNNNNNNN ========== ====== ====== ====== ========== =================== 4 19 44 GGGTGGTGTGGCCCAGCGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [21.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [2725,2209] Score: 0/0.18 # # Final direction: R [0,1.05 Confidence: HIGH] >NC_016586 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 62637 37 100.0 38 GAGGGGCACT ..................................... ATACGCAGCAGCTTCGGTTCGTTGAGTTGGAGTTCGAC 62712 37 100.0 42 GGAGTTCGAC ..................................... CCTTGGGCGGTGTTGGACGAGCCGTTGACGCCGGTGTCCTGC 62791 37 97.3 37 GGTGTCCTGC .......T............................. GGTCGGGGCGGTCATCGGGTGGGCTCCTTCGGGAAGA 62865 37 97.3 36 TTCGGGAAGA ...........A......................... ACGTGCCGTCCGTGGTGTGTGTGGGCGAGGCTGCTG 62938 37 97.3 GAGGCTGCTG ..........G.......................... GCTCGGTCGTTCAGTTCGTTGTGGTAATCAATTGTTTTACGTCA ========== ====== ====== ====== ========== ===================================== 5 37 38 GTTCCGCCGGTGTCCGCGTTTGGGAGCGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [5,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-9.80,-7.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [46.7-50.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [223,385] Score: 0/0.18 # # Final direction: F [5.28,0.37 Confidence: HIGH] >NC_016586 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 62645 29 100.0 46 NNNNNNNNNN ............................. ATACGCAGCAGCTTCGGTTCGTTGAGTTGGAGTTCGACGTTCCGCC 62720 29 100.0 50 NNNNNNNNNN ............................. CCTTGGGCGGTGTTGGACGAGCCGTTGACGCCGGTGTCCTGCGTTCCGCT 62799 29 100.0 45 NNNNNNNNNN ............................. GGTCGGGGCGGTCATCGGGTGGGCTCCTTCGGGAAGAGTTCCGCC 62873 29 100.0 44 NNNNNNNNNN ...A......................... ACGTGCCGTCCGTGGTGTGTGTGGGCGAGGCTGCTGGTTCCGCC 62946 29 100.0 43 NNNNNNNNNN ..G.......................... GCTCGGTCGTTCAGTTCGTTGTGGTAATCAATTGTTTTACGTC 63018 29 100.0 1 NNNNNNNNNN A..C...................A.C.TG NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 6 29 45 GGTGTCCGCGTTTGGGAGCGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [5,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.90,-6.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [231,313] Score: 0/0.18 # # Final direction: F [5.55,0.37 Confidence: HIGH] >NC_016584 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 1916617 31 100.0 36 AGTTTTTGCT ............................... TAGGCTGAAAGAAAAAGAATTCAAGCTATTGAGGAC 1916684 31 100.0 35 TATTGAGGAC ............................... TTAATTTAGTCATCTCATCAACGTACACGACGATC 1916750 31 100.0 37 CACGACGATC ............................... TTAATCTTATCCATGCCCATTTGCTCCATAGCTGATT 1916818 31 100.0 34 ATAGCTGATT ............................... TCTTAGGACCTCAGACTCATTTTCCTGAATATTC 1916883 31 100.0 34 CTGAATATTC ............................... TTGCCAACAAATATATCTAGCCAGTAAAGCATTA 1916948 31 100.0 36 TAAAGCATTA ............................... TGGATCGCGAAGGGAAATTAATTATCGAGCAGTTAT 1917015 31 100.0 34 GAGCAGTTAT ............................... TCGCAGTGCATTTACTCAGGCGAATTTGATTAGC 1917080 31 100.0 35 TTTGATTAGC ............................... TTGTGATAACATTTGAGCCGCTGGCATGACTCTAG 1917146 31 100.0 37 ATGACTCTAG ............................... TTTCCCTTGGAGTAAATCCAACACATTCAAACGCCGG 1917214 31 100.0 36 CAAACGCCGG ............................... TTCCGTTAGTCCTCGTAATGTTTGAACTAAGCTCAT 1917281 31 100.0 38 CTAAGCTCAT ............................... TTTGGAATGATCGGGGGGCGTAGGTAATTGAGTCGAGC 1917350 31 100.0 36 TGAGTCGAGC ............................... TTGTTTCTTCGTCGATCCCTTGCACACTGAATTGAG 1917417 31 100.0 36 CTGAATTGAG ............................... TTTCCATAGTTCGGTCTTCATATTCCGGCCCGTGTG 1917484 31 100.0 36 GGCCCGTGTG ............................... TTGCACCACTACTGAGGACATTTTCGACCCGCCTCA 1917551 31 100.0 34 ACCCGCCTCA ............................... TGGATTATATCACGCCGGATACCAATTCCCGCAA 1917616 31 100.0 34 ATTCCCGCAA ............................... TCCCATCAACCTGACCATTTGCCTCCATGGTTGC 1917681 31 100.0 37 CCATGGTTGC ............................... TCCCCATGTTTGCCACTTATTTTCCTCCTTCCTTAGA 1917749 31 100.0 38 CTTCCTTAGA ............................... TCCTTTCCCCCTTTACTCATCATGTGTCAAAAGGTCGA 1917818 31 100.0 34 AAAAGGTCGA ............................... TATTTCTTTCAACTCAGCCAGTATTTAACGTAAG 1917883 31 100.0 36 TTAACGTAAG ............................... TTTACCGTATATTTACCATCAAGTAGTACAACTTGT 1917950 31 100.0 TACAACTTGT ............................... ATTTGTGTAA ========== ====== ====== ====== ========== =============================== 21 31 35 GTCGCTTCCCACTGGGAAGCGTGGATTGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [7,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [610,143] Score: 0.18/0.18 # # Final direction: F [4.68,0.37 Confidence: HIGH] >NC_016584 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1926565 32 100.0 35 NNNNNNNNNN ................................ TTTTAACCCCAATACGCGCCATTTCGGCGTTTAAA 1926632 32 100.0 36 NNNNNNNNNN ................................ GCTTTCCCCCGTTACCTATTGCGTGGAGGAGCTTAA 1926700 32 100.0 35 NNNNNNNNNN ................................ TCCATGCAATCGGAAACGGCGGGAAGCGAAATATC 1926767 32 100.0 33 NNNNNNNNNN ................................ ACATTATCAGCAATCAGAGAATTCAGTGGATAT 1926832 32 100.0 35 NNNNNNNNNN ................................ GGAACCTCAACTCTAGAGACCGTGTGTCCAATGAA 1926899 32 100.0 34 NNNNNNNNNN ................................ ACCTTAACGGTACTCAGTATTCAATTGTCTTAAC 1926965 32 100.0 33 NNNNNNNNNN ................................ CCCAAATAAAACTTATCCTTTACACGTTCACAG 1927030 32 100.0 36 NNNNNNNNNN ................................ TTAGCAGCTCCCGTAACGGTATTAGCCGCCCAGTAC 1927098 32 100.0 34 NNNNNNNNNN ................................ AGTTTTATTAATGTATTATCGGTATTCTTAGAAT 1927164 32 100.0 33 NNNNNNNNNN ................................ ACTAACGGCATACGCTTGAGCAACGTCACGCAT 1927229 32 100.0 35 NNNNNNNNNN ................................ ACATACATGATCTTCCCATGGGTACAGTTCCAGCC 1927296 32 100.0 34 NNNNNNNNNN ................................ CGTTTGACAACCGGTAAGCATTACGGCTAATGCT 1927362 32 100.0 36 NNNNNNNNNN ................................ AGTCAATACTCAGACGCGTTTTATGATGAAGTTCGC 1927430 32 100.0 34 NNNNNNNNNN ................................ CTCTTAAGTTAGACCTTACTGGCGTAGGTACACA 1927496 32 100.0 34 NNNNNNNNNN ................................ AGGCTTAGATTTGGGGCATAAAAAGACCGCCTCG 1927562 32 100.0 34 NNNNNNNNNN ................................ CTTTGGTTTAGTAGCCAATCACCCCACCTCTATT 1927628 32 100.0 35 NNNNNNNNNN ................................ TTTGTTTTGAGCTAAATCGGCATAAGCATCTCCCA 1927695 32 100.0 34 NNNNNNNNNN ................................ CAAGTCATCGCATTTTTTAGCTGCAATTCCATTG 1927761 32 100.0 35 NNNNNNNNNN ................................ TTTAGCTTGAGAGCACAAAAAGCAGCACATCCGCA 1927828 32 100.0 35 NNNNNNNNNN ................................ ACTTCTAATAAAGCACCTTACCCTGCCGTTTTCCA 1927895 32 100.0 34 NNNNNNNNNN ................................ GTATATGCCGTGATGGTCATCACTCTGCACTCGA 1927961 32 100.0 34 NNNNNNNNNN ................................ TTTAGCTGATGAGCTAAACATCACTCAACAAGCC 1928027 32 100.0 34 NNNNNNNNNN ................................ AAGCGCAATAGAAAATGCATTAATGCGCACTGAG 1928093 32 100.0 35 NNNNNNNNNN ................................ TTCCAGCTTAAGATGTTCAACTGCTTGCTGAATGT 1928160 32 100.0 35 NNNNNNNNNN ................................ TTGATGACTTCATTAAGGATCGTAGACGGGATAAT 1928227 32 100.0 35 NNNNNNNNNN ................................ ACTTCGTGATCACACCTTTATTTCTTAATCCCAAC 1928294 32 100.0 35 NNNNNNNNNN ................................ TGATAAGGTTGAAAAATACTCAGACCCATTAGCCT 1928361 32 100.0 32 NNNNNNNNNN ................................ CGAATAGACTTATTTTAGAGATATGGGCCGAG 1928425 32 100.0 34 NNNNNNNNNN ..GT.G.......................... ACAGCAAAGATAAATAGTAATGCCAGACCACCCA 1928491 32 100.0 35 NNNNNNNNNN ................................ GATATGTGAGCTAAGTTGTGCTAAGTTTTGGCAAC 1928558 32 100.0 36 NNNNNNNNNN ................................ AATATTTTAGTATGGTTGAAGGAGGAAAATTGAGAT 1928626 32 100.0 35 NNNNNNNNNN ................................ TTCCGGGGAATATTTAGACTACAGAGCCGGGGAAC 1928693 32 100.0 1 NNNNNNNNNN ......................A..ACTTTTC NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 33 32 34 GTCGCTCCCTACATGGGAGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [7,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.60,-4.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [170,672] Score: 0.18/0.18 # # Final direction: F [5.28,0.55 Confidence: HIGH] >NC_016612 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 233692 29 100.0 32 NNNNNNNNNN GATAA..AGGAT.GC.............. GTGTATTGAACTGTTGCCACGTTTCCTCCGGG 233753 29 100.0 32 NNNNNNNNNN ...........T................. CATTCAGACATCAACCAAGCGTTTCGTGAGTC 233814 29 100.0 32 NNNNNNNNNN ...............A............. GATGATTGCGCTCGGATCACTTGTTACCATTG 233875 29 100.0 32 NNNNNNNNNN ................A............ GCAGCCTGAACAGCAAGGGTGCGCTCTGAAGA 233936 29 100.0 32 NNNNNNNNNN ............................. GCAAAATACCAGGTCGCCCCAATCTGTCGCGA 233997 29 100.0 32 NNNNNNNNNN ............................. GTGCCGCGCCGCTGCGTGAAGACCTGCGTAAT 234058 29 100.0 32 NNNNNNNNNN ............................. TTCTTCCGCCTTCGCTATGTCTGCATCAATCT 234119 29 100.0 32 NNNNNNNNNN ............................. ATCCGCTCAGTAAAGCCCAGCCCGTTTACGTT 234180 29 100.0 32 NNNNNNNNNN ............................. ATTCACTGATTCGCCCCTACGACCGCCTGGCC 234241 29 100.0 32 NNNNNNNNNN ............................. CTGTGCCATCTGGAACCAGTTAGCGCGCTGCT 234302 29 100.0 32 NNNNNNNNNN ............................. GGAACCATGCGTAAATCAGAAGTTATCGAACA 234363 29 100.0 32 NNNNNNNNNN ............................. GCCTCAGGTTGATGTAAGTGTTGCTGGATTTT 234424 29 100.0 32 NNNNNNNNNN ............................. AGCTATAGTCAGTGACAAGTATTCCGTTGTGC 234485 29 100.0 32 NNNNNNNNNN ............................. AATGACAATCGCAGACCATACCCTCCCGTCAA 234546 29 100.0 32 NNNNNNNNNN ............................. GAGGAGACGGTATTCATGGAGTAGTCGAAACC 234607 29 100.0 32 NNNNNNNNNN ............................. GAGGTCGTGAAAACGGAAATCCTCTATCCCCG 234668 29 100.0 33 NNNNNNNNNN ............................. ACTATTTTCGGAGTTAATTATGGCAAAAAAAAC 234730 29 100.0 32 NNNNNNNNNN ............................. GGGAGAAGTCTCTGGGCTTACGGCAAGACAAT 234791 29 100.0 32 NNNNNNNNNN T............................ TTTCGTGACCGCTTCGATGAGTGGCCAAACGG 234852 29 100.0 32 NNNNNNNNNN ............................. CTCATAGACTCATATCTATTTGAGTACTCAAC 234913 29 100.0 33 NNNNNNNNNN ............................. GCCGGTTCCGGTGCGATCGGTCTCGTTGAACTC 234975 29 100.0 32 NNNNNNNNNN ............................. TCTTTCGTATCAGGCCCACTGTCTGACGGGTT 235036 29 100.0 32 NNNNNNNNNN ............................. GGCTGATAGTGCTGCCAGAATCCCCCTCGTAG 235097 29 100.0 32 NNNNNNNNNN ............................. TTCCATGCCAGTATCAACCGGGATCGGCATAT 235158 29 100.0 32 NNNNNNNNNN ............................. TCTCTGAAAAACTCGCTTGTGTTAAGCCTTCG 235219 29 100.0 32 NNNNNNNNNN ............................. TTGCCGGTGATAAGTATCTCTTTGAGCGCTTC 235280 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 27 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [15-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [110,762] Score: 0.18/0.18 # # Final direction: R [0.27,1.83 Confidence: HIGH] >NC_016612 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3413123 28 100.0 32 NNNNNNNNNN ............................ TATAACTCGGCCACAGGTCGGCTTATCCTGAA 3413183 28 100.0 32 NNNNNNNNNN ............................ ATCAGGCAAAACATTTCCTGCATGTTCGCGAT 3413243 28 100.0 32 NNNNNNNNNN ............................ TGATCCGCAGATTGTACCGGCGTCGACCACAG 3413303 28 100.0 32 NNNNNNNNNN ............................ AGACCGATTTTATCAGCCAGGGGGATGATCAC 3413363 28 100.0 32 NNNNNNNNNN ............................ ATGTACTGTGCCAGCAGCTGAATGCGGAAGGG 3413423 28 100.0 32 NNNNNNNNNN ............................ GCAGTGTCGCGTTCCAGAAACAGCCTGATTTT 3413483 28 100.0 32 NNNNNNNNNN ............................ AATATAAATTGCCTGAATTTCTTGCGCGTACT 3413543 28 100.0 32 NNNNNNNNNN ......................C..... ATTTGCCGAAAATGCTGCCGCAGTTGTATTTG 3413603 28 100.0 32 NNNNNNNNNN ............................ AGTATCCTAAAGAACCGTTGCGGCGGCGGTTG 3413663 28 100.0 33 NNNNNNNNNN ............................ TCTACGTACAGCAGAGTAAAGCATGAAGTCAGA 3413724 28 100.0 32 NNNNNNNNNN ............................ TTCCTGGTTTCACCATCTACAGCTTTCACCTG 3413784 28 100.0 32 NNNNNNNNNN ............................ TTCAGGGATATTCGCGATGTCCGCCTGAGCAG 3413844 28 100.0 32 NNNNNNNNNN ............................ ACAAGTTGTAGGCGGCCATCAGGTAGAATTTT 3413904 28 100.0 32 NNNNNNNNNN ............................ ACACCAAAATGGCTTCATGGCTCATTGAGTGG 3413964 28 100.0 32 NNNNNNNNNN ............................ ATCAGAGTGCCGGCAGCTTTATCGCCGGCACG 3414024 28 100.0 32 NNNNNNNNNN ............................ TCAGAGCGGTGATTTCTGCGAAGGTTGTAGAT 3414084 28 100.0 32 NNNNNNNNNN ............................ TTACAGGTGACATCGCACACCCCTGATACCTC 3414144 28 100.0 32 NNNNNNNNNN ............................ TGTGGCAGCCGAACAAAAACGGCGACGGGATT 3414204 28 100.0 32 NNNNNNNNNN ............................ AGTGCAGCAAACCAGAGAAGGGCGCGCCGGCT 3414264 28 100.0 32 NNNNNNNNNN ............................ AGAAGAAAAGGCAGACCCGATCAACGAAGAGA 3414324 28 100.0 32 NNNNNNNNNN ............................ GTATTCGGTCCAGTGCCTGATGGCGCGGATGC 3414384 28 100.0 32 NNNNNNNNNN ............................ CGCCGCGAAACTGGGCCACGCCTTCAGCTGCT 3414444 28 100.0 32 NNNNNNNNNN ............................ ACCAACAAACTGCAGGCAGAGCAGAAAGCCGC 3414504 28 100.0 32 NNNNNNNNNN ............G............... ATACGCCGTGATGAACTGAACGGAATCCCGAT 3414564 28 100.0 32 NNNNNNNNNN ............G............... AAACTTCGCGCGGATTTCAGCGATTTTGTTTA 3414624 28 100.0 32 NNNNNNNNNN ............G............... CGCTACTCCGCAAAAATGAAATTCGTGTGCTG 3414684 28 100.0 32 NNNNNNNNNN ............................ ATGTTGCGGAGAATCCACAGCCTGTTCTCAGT 3414744 28 100.0 32 NNNNNNNNNN ............................ TGCACGAAATCAACGTTGCCCGCTCGGTTGCC 3414804 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 29 28 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [63.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [191,154] Score: 0/0.18 # # Final direction: F [1.51,0.41 Confidence: MEDIUM] >NC_016589 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 532740 25 92.0 36 ATGATCTGGG ....G.....T.............. GCCGTGGTGATGGCTACACAGCTCCCTATCGACAGG 532801 25 100.0 36 TATCGACAGG ......................... GCCGGGACTGGAAGAGTACAAATGCCGCTGGGTCGG 532862 25 96.0 36 GCTGGGTCGG ..........T.............. GCCCGCCGATTGTGCAGCGCAAACCGCGCCAACGAA 532923 25 100.0 36 CGCCAACGAA ......................... GCCCTATCCAAGCGATGAACTGCTCGACGTGGCCGA 532984 25 96.0 36 ACGTGGCCGA .G....................... GCCCCGACACGAAATAAGAATCTGCCGCCGGCCATG 533045 25 100.0 36 GCCGGCCATG ......................... GCCCGCCACTTCGTAGTACCGGCGGGGACGTTGTTG 533106 25 92.0 36 GACGTTGTTG .............AC.......... ACCCCGTCATTCGCGCGATACATCGCGAGCATGAGC 533167 25 96.0 36 GAGCATGAGC ..............C.......... ACCGCCGTAGGACTTCGCGCACGTGACTGTCCCGCG 533228 25 96.0 36 CTGTCCCGCG ..............T.......... GCCTACATGCTGTCGAGCATCATTGAGATGTGGGGC 533289 25 96.0 36 GATGTGGGGC ..............T.......... GCCTCGGTCGCGAGCTGGTACACGGCGGCCGGTGGA 533350 25 96.0 36 GGCCGGTGGA ..............T.......... GCCGTCCTCGACGCGGGTACCCCGACCGACTTCTTC 533411 25 96.0 36 CGACTTCTTC ..............C.......... GCCTCCGTGAGAGGCAAGCTCCACGGGCGTTAGCGA 533472 25 92.0 36 GCGTTAGCGA .............AC.......... GCCCCAGTAGACTCGGCGCGCGCCACCGAAGAAACC 533533 25 92.0 CGAAGAAACC ..............C.......C.. GCCGTGAACGGGA ========== ====== ====== ====== ========== ========================= 14 25 36 GTTTCCTCCGCGTGGGCGGAGATAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.30,-7.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [4-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [51.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [78,189] Score: 0.18/0.18 # # Final direction: F [1.05,0.55 Confidence: LOW] >NC_016593 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 394989 30 100.0 39 ATGGTTTGGG .............................. TTGTTGCCCCTCCCCGAACACTTCCTCAACCTGCTCCAA 395058 30 100.0 37 CCTGCTCCAA .............................. CTCCGCGTAATTCGCTGTCTGTTTGCGTTTGCGCCGG 395125 30 100.0 37 TTTGCGCCGG .............................. AATCCTCCGTGATGTTTCCATAGCGAACGGTCTTGCT 395192 30 100.0 37 CGGTCTTGCT .............................. TTTCATTCATCATTCTACGTACTTAGACGACGAAAAG 395259 30 100.0 36 CGACGAAAAG .............................. ACATGGGCAGTCGGCAACGCGGTGACACGAAAAGAC 395325 30 100.0 39 ACGAAAAGAC .............................. CAACAAAGAGTCCGACGACGATACGCTTGAGATCATCGT 395394 30 100.0 36 AGATCATCGT .............................. CTTTTTGCAACGTCCGGGACCGCAAAAACGATAGGT 395460 30 100.0 34 AACGATAGGT .............................. GCAATACCTTTGAATCCAACCTTGCTGGATAAAG 395524 30 100.0 39 CTGGATAAAG .............................. TTTGGTCCATGATCGAAAAGATAATAAACGGCGCCGACT 395593 30 100.0 36 GGCGCCGACT .............................. TTCGTTGGATGACGTCGAGATTGTCACGGTTCCGTC 395659 30 100.0 38 CGGTTCCGTC .............................. GGTTCTTGTGACAGAATGCCAACTTGTACAGCGGCATT 395727 30 100.0 35 CAGCGGCATT .............................. GCAGCGCCGGTTGTCGAGGTGTACCTTGCGATTGA 395792 30 100.0 38 TTGCGATTGA .............................. CGGCGACAACGGGAAACGAATCATTACGGACATAATCC 395860 30 100.0 38 GACATAATCC .............................. CACTTGTAGAGCTAGAAGGTTCCCTTCGGAATACGATG 395928 30 100.0 36 GAATACGATG .............................. GATTGGTGAACTCCGGTCTTACCGCGGTGATGCTCC 395994 30 100.0 35 GTGATGCTCC .............................. GTTGGTATCTGCGAAGTGGTCGCGTATCCAACGTC 396059 30 100.0 37 ATCCAACGTC .............................. CCGTGGCAACCGTGGTACATGGAACTATTCGGAAATA 396126 30 100.0 38 TTCGGAAATA .............................. AACTGGTGGCAGGAGCAAATATTTCTCTTACTCCAGAC 396194 30 100.0 35 TACTCCAGAC .............................. TGCACCAAAATAGACCTGGCGATGACGCTAAGGAA 396259 30 100.0 40 CGCTAAGGAA .............................. TTGAATCCCGTTGATTATGTACAACGCCAAGTGCTGAAAA 396329 30 100.0 36 GTGCTGAAAA .............................. CAAGCATTGGAGGGAAAAGAATGATCTACATCTTGC 396395 30 100.0 35 TACATCTTGC .............................. TCGCTGAAACAGCTGACTCGGTACAGTGAAGCCGA 396460 30 100.0 36 GTGAAGCCGA .............................. ACACAACGGTACGGACATATCAGCTGACGCCGGAGC 396526 30 100.0 35 ACGCCGGAGC .............................. TCCACGCTTGTAGTGAAAACAACAGCCGGAACTAC 396591 30 100.0 40 CCGGAACTAC .............................. GCCGAGGCCGAGGCGAAAGCGTTGGTGAAACTATTGCCCA 396661 30 100.0 39 CTATTGCCCA .............................. GCATCTCGTTCCGGATGCGTGTCAGCACATTCAGCACAT 396730 30 100.0 36 TTCAGCACAT .............................. AGGCTCGCTATGGCTACGACAACATCAGTGGAATAC 396796 30 100.0 36 AGTGGAATAC .............................. TTATATCATCATTTGGTGATTTGTAAACATCTTTTC 396862 30 100.0 35 ACATCTTTTC .............................. CAATCTCAAAAACTCGGTTGCGATCATCGAGCGAT 396927 30 100.0 38 ATCGAGCGAT .............................. CGTTTCCCAGCTCGAAAAAGTGGCGCAGAAGCAACAAA 396995 30 100.0 38 AAGCAACAAA .............................. CTATTTCCCCAAGCGTGTGCTGGCACGCTGCAAGCATA 397063 30 100.0 38 TGCAAGCATA .............................. CATTCGATATATGGACGACGTCATTGTACTGCACGAAA 397131 30 100.0 37 CTGCACGAAA .............................. ACCAAACAACTCAACCAATTTTTTAAAACTAATTCCC 397198 30 100.0 36 ACTAATTCCC .............................. ACCGTCTACCCATTCAACAAGAAAGGCTGTTTTTCT 397264 30 100.0 35 CTGTTTTTCT .............................. TAAGCGTCTGTCAATGTTTCTTGACGTTCGCTTTC 397329 30 100.0 40 GTTCGCTTTC .............................. TCTATGAAACCCTTCGTACCGAAGAGAAACAGCGGTACTA 397399 30 100.0 39 AGCGGTACTA .............................. TGATCGCTCTGGCCGCAGTTAACTTATTAAATTTATCGA 397468 30 100.0 34 AATTTATCGA .............................. TGAAAATCAGCAGATATTGCAAAAGCTCGAGGAA 397532 30 100.0 36 GCTCGAGGAA .............................. CCTCAACCACTTTAAGTGTCTTTTTGAGGTCGCCCC 397598 30 100.0 39 AGGTCGCCCC .............................. CGGGTTTTGTTGGTTCCGGAAAGTCGTACAATGCTACAC 397667 30 100.0 38 AATGCTACAC .............................. AAATTTTTCAATATCCCCCTAATATAGCTCCATCTCCG 397735 30 100.0 38 TCCATCTCCG .............................. AAGATATTGCGATCAACGAGGCGGTCGAACTGGATAAG 397803 30 100.0 40 ACTGGATAAG .............................. ACGGACGAGATGCCCGTAAACAAACCTGTTTTGGCTTTCA 397873 30 100.0 38 TTGGCTTTCA .............................. TCTTGTCCGGCTTCGAAGCCGAAAACCAGCCAAGATTC 397941 30 100.0 35 GCCAAGATTC .............................. TCCTTTCAAATTTTGGTCAAAGACACAGACCAAAT 398006 30 100.0 36 CAGACCAAAT .............................. GTGACAAACGGGCTTGCAAGTAAGAAACTAGCGATT 398072 30 100.0 36 ACTAGCGATT .............................. TCTCTAGAAATAGAGGTGAAGGAAATTGCAAAACGT 398138 30 100.0 34 TGCAAAACGT .............................. GCTCGAGATTTTCGATATGGTCAATCAAGTTCAT 398202 30 100.0 36 TCAAGTTCAT .............................. ACCTTTAGCTCCTTCGCTGTGTCTCGGAAATTTGTC 398268 30 100.0 37 GAAATTTGTC .............................. CCGTTTGACCTTTATAATATTTTGGCTGTTATCAATG 398335 30 96.7 GTTATCAATG ................C............. CGGAGTCGGC ========== ====== ====== ====== ========== ============================== 51 30 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.80,-0.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [56.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [203,89] Score: 0.18/0.18 # # Final direction: F [6.23,0 Confidence: HIGH] >NC_016589 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================== ====== 733742 26 100.0 35 NNNNNNNNNN ....A...........G.T....... ACCAAGGAGTCAGCGAGACGACCCTTCGCCGCGAG 733803 26 100.0 35 NNNNNNNNNN ..C....................... ACGCGCAGTCGCGCATCGTGGCGTTAAGTGCCGAG 733864 26 100.0 35 NNNNNNNNNN ..C....................... ACTTCACGAATCTGCCGGCATCCCGCGACGATGGG 733925 26 100.0 35 NNNNNNNNNN ..C....................... ACATCACTGGCTCTTGGGCGTGCTGACGATGCGCG 733986 26 100.0 35 NNNNNNNNNN ..C....................... ACGGCGCGAGATTCAGCAATTCTTCATCGCTCGCG 734047 26 100.0 35 NNNNNNNNNN ..C..............C........ GCCGACAACCGAGAGGAACACGAAGTCGTGAACAA 734108 26 100.0 34 NNNNNNNNNN ..C....................... TCTTTTTATTTCGCGAACAAGTCTCCCTGTCCAG 734168 26 100.0 35 NNNNNNNNNN ..C....................... TCGCGATCGCACCGGCGTCGATGAAGACCGTCAAC 734229 26 100.0 35 NNNNNNNNNN ..C....................... TCCAAGCGGCTAACTCACAATATTTCCGATAATCG 734290 26 100.0 35 NNNNNNNNNN ..............T........... TCTCGCTCCACGATTGGCCGAGATTCCACACGCTG 734351 26 100.0 35 NNNNNNNNNN .......................... TCTCAAGTGCTGCTTATTCATCGATCACTCCACGC 734412 26 100.0 35 NNNNNNNNNN .......................... TCGAAATCGCCTTCCCGTCCGCGCAGGAAAACGAC 734473 26 100.0 35 NNNNNNNNNN .......................... TCGGTGCAGACGTGGACCGCGTGAGGATGACGCCG 734534 26 100.0 35 NNNNNNNNNN .......................... TCGGTCTGGTCCGCCTGAATGTCCCTCACTCTGCC 734595 26 100.0 35 NNNNNNNNNN ......................A... TCACGTCATCGGGGCTCTGCAAGCCATCGTACAAA 734656 26 100.0 35 NNNNNNNNNN .......................... TCCGCCTCGCCCGCCCGCGTATCGAGCGCGACGCC 734717 26 100.0 35 NNNNNNNNNN .......................... TCCTCTGGACGAGGTGGACAATGCGGTCATGGTGC 734778 26 100.0 35 NNNNNNNNNN .......................... TCCGCGAAGATCGCGGTCCAGGCGGGCGTCAGATA 734839 26 100.0 35 NNNNNNNNNN .......................... TCGCTTCCTTGCCGACGTGTCCCGTGAGCACCGCG 734900 26 100.0 1 NNNNNNNNNN .......................... NNNNNNNNNN ========== ====== ====== ====== ========== ========================== 20 26 34 GGTCTATCTCCGCGCACGCGGAGGAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-6.00,-6.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [30.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [319,66] Score: 0.18/0.18 # # Final direction: R [0.55,0.68 Confidence: LOW] >NC_016589 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 733803 28 92.9 33 TCGCCGCGAG ..C.......................A. GCGCAGTCGCGCATCGTGGCGTTAAGTGCCGAG 733864 28 92.9 33 AAGTGCCGAG ..C.......................A. TTCACGAATCTGCCGGCATCCCGCGACGATGGG 733925 28 92.9 33 CGACGATGGG ..C.......................A. ATCACTGGCTCTTGGGCGTGCTGACGATGCGCG 733986 28 92.9 33 ACGATGCGCG ..C.......................A. GGCGCGAGATTCAGCAATTCTTCATCGCTCGCG 734047 28 89.3 33 ATCGCTCGCG ..C..............C........G. CGACAACCGAGAGGAACACGAAGTCGTGAACAA 734108 28 96.4 32 TCGTGAACAA ..C......................... TTTTTATTTCGCGAACAAGTCTCCCTGTCCAG 734168 28 96.4 33 CCCTGTCCAG ..C......................... GCGATCGCACCGGCGTCGATGAAGACCGTCAAC 734229 28 96.4 33 GACCGTCAAC ..C......................... CAAGCGGCTAACTCACAATATTTCCGATAATCG 734290 28 96.4 33 CCGATAATCG ..............T............. TCGCTCCACGATTGGCCGAGATTCCACACGCTG 734351 28 100.0 33 CCACACGCTG ............................ TCAAGTGCTGCTTATTCATCGATCACTCCACGC 734412 28 100.0 33 CACTCCACGC ............................ GAAATCGCCTTCCCGTCCGCGCAGGAAAACGAC 734473 28 100.0 33 GGAAAACGAC ............................ GGTGCAGACGTGGACCGCGTGAGGATGACGCCG 734534 28 100.0 33 GATGACGCCG ............................ GGTCTGGTCCGCCTGAATGTCCCTCACTCTGCC 734595 28 96.4 33 TCACTCTGCC ......................A..... ACGTCATCGGGGCTCTGCAAGCCATCGTACAAA 734656 28 100.0 33 ATCGTACAAA ............................ CGCCTCGCCCGCCCGCGTATCGAGCGCGACGCC 734717 28 100.0 33 GCGCGACGCC ............................ CTCTGGACGAGGTGGACAATGCGGTCATGGTGC 734778 28 100.0 33 GTCATGGTGC ............................ CGCGAAGATCGCGGTCCAGGCGGGCGTCAGATA 734839 28 100.0 33 GCGTCAGATA ............................ GCTTCCTTGCCGACGTGTCCCGTGAGCACCGCG 734900 28 100.0 GAGCACCGCG ............................ CCTAGATCA ========== ====== ====== ====== ========== ============================ 19 28 32 GGTCTATCTCCGCGCACGCGGAGGAATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [5,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-10.50,-10.50] Score: 0/0.37 # Array degeneracy analysis suggestion: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [36.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [380,64] Score: 0.18/0.18 # # Final direction: R [0.18,0.68 Confidence: MEDIUM] >NC_016593 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2065007 30 100.0 36 TTGAACAGAT .............................. GGCGTCGGCGCGTATTTTTGGCCATTGATCGCTATA 2065073 30 100.0 39 GATCGCTATA .............................. CAAATTGGATCGGCTTGTACGGTCTGTCGGTGACTTGGA 2065142 30 100.0 35 GTGACTTGGA .............................. TGCAATATACCGAGCCGATGAAAGTATGGAGTTGG 2065207 30 100.0 35 ATGGAGTTGG .............................. GAAAATATATTTCAGTCCCAAACCGTCACACTCAA 2065272 30 100.0 37 TCACACTCAA .............................. GATTAATAGGCTCGGCATTTTCAGGCAATTGGCCTTG 2065339 30 100.0 36 ATTGGCCTTG .............................. AGTAAGCGGCCAAGTGGAAAGGGTTTTCGCCCTAGA 2065405 30 100.0 35 TCGCCCTAGA .............................. GTACATCGAAGTCGACTCAATGGAACGCATCTTCT 2065470 30 100.0 CGCATCTTCT .............................. CAACTAAAAG ========== ====== ====== ====== ========== ============================== 8 30 36 GTTTCAATCCCTCATAGGTACGATAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [169,590] Score: 0.18/0.18 # # Final direction: R [0,5.05 Confidence: HIGH] >NC_016610 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2508338 30 100.0 36 NNNNNNNNNN .............................. ACAGAAACTTCTTTTCCTGCAAGATTAAATAATACA 2508404 30 100.0 37 NNNNNNNNNN .............................. GGTATGTATAAATCTACACGTCTTGGGTTTTCTAATA 2508471 30 100.0 40 NNNNNNNNNN .............................. AAAATTATCTTTGATAACTTTAAGAATCTTTTTGTCTTCT 2508541 30 100.0 40 NNNNNNNNNN .............................. CCATTACTGCGCGGGCGGCGATGCAGGAGAACCCGGACCG 2508611 30 100.0 39 NNNNNNNNNN .............................. TAAAAGGTTAAAAGTTAAATGAAGAAAGACATAAAACGA 2508680 30 100.0 36 NNNNNNNNNN .............................. GTCTTTGGAGGCCTTTACTCTTTTAAAAATGCCCGA 2508746 30 100.0 34 NNNNNNNNNN .............................. TCTCTTGTGTAGTTATAACACACAATTGAGTCAT 2508810 30 100.0 35 NNNNNNNNNN .............................. CCTCTTCGTAATACGGCTCTATATCGAGCTCTCTG 2508875 30 100.0 38 NNNNNNNNNN .............................. CCCCGAAGGCGCGGCCGTTCCACTCTAAGGTGTCGACT 2508943 30 100.0 36 NNNNNNNNNN .............................. GTTAGATGATAACTTCCGTCTTCTCCGAGCATCATC 2509009 30 100.0 36 NNNNNNNNNN .............................. TTCACGGGGGTAAAGCCCGCCCCTTACGGGGAACTA 2509075 30 100.0 37 NNNNNNNNNN .............................. AAAAGATTTGCTATATTGTGAAAAATTTAAAAAAAAG 2509142 30 100.0 39 NNNNNNNNNN .............................. TTCACGGGGGTAAAGCCCGCCCCTTACGGGGAACTACTC 2509211 30 100.0 38 NNNNNNNNNN .............................. TGCAGCCGTTGTCTCGCAAAAAGCAGCGCCTTCTAAAA 2509279 30 100.0 36 NNNNNNNNNN .............................. CCTGCCCTGCGTGGGGGCTTTGGTGTGCGCAGCCTG 2509345 30 100.0 37 NNNNNNNNNN .............................. CTTCAAAAGCGGCAGCGCGCTTTTTGAGAAGGCGCTG 2509412 30 100.0 37 NNNNNNNNNN .............................. TTTGTGTTATACGGAGATTATACACGGTGGGTGTGGG 2509479 30 100.0 37 NNNNNNNNNN .............................. TGCGCGCATACGTTCTTCTACGTACGCCTTTTTGGTT 2509546 30 100.0 38 NNNNNNNNNN .............................. AAAAGATTTGCTATTTTGTAATAGCAAAGAACTATGAA 2509614 30 100.0 35 NNNNNNNNNN .............................. TAAGAGGTTATCTCCGTCCGCACGAGTTCGGACGT 2509679 30 100.0 36 NNNNNNNNNN .............................. CATACGTTGCACGAATGTCCGCATCAAAAGCGGCAG 2509745 30 100.0 36 NNNNNNNNNN .............................. GTTATTCTCCCAATCACCGAACCTGTCAACAAAAGA 2509811 30 100.0 38 NNNNNNNNNN .............................. CTATAACTGCAGCCCGCACGGCTGCACGGTTGGCGTAC 2509879 30 100.0 37 NNNNNNNNNN .............................. GTCTGGTCGTTTTTTCTGTATTGGGGGGGGCGGCATT 2509946 30 100.0 36 NNNNNNNNNN .............................. ACGTTAACACGTGCACCGCCAACGCGGGCAGAAAAG 2510012 30 100.0 35 NNNNNNNNNN .............................. CGTATCTGAAACGTCCGAATTGGTGCGGACGGAGG 2510077 30 100.0 36 NNNNNNNNNN .............................. GCCACCACCGACCCTGCACGGGCGGTTTGGCTCGCG 2510143 30 100.0 37 NNNNNNNNNN .............................. ACATAGCAAACCTTGTTGGATAATATTCTTCGTCTAT 2510210 30 100.0 36 NNNNNNNNNN .............................. GAACAATAACAAACAGGATTGGGCGATCATACTTTT 2510276 30 100.0 36 NNNNNNNNNN .............................. CTCGGATTTATCCATTACGTCGGCCGCATCGATTTG 2510342 30 100.0 38 NNNNNNNNNN .............................. CCAACGCGGGGAAGAAGGCGGATGAGGTTTCGGAACAA 2510410 30 100.0 37 NNNNNNNNNN .............................. CGCCGAGAAGGTCTCCGTCCTCGTCAAAAACAGACTC 2510477 30 100.0 37 NNNNNNNNNN .............................. GCTCGGGGATCGATATAATAGAATGGTAGAGGAGTGG 2510544 30 100.0 38 NNNNNNNNNN .............................. TACGGGGTCACCTCCGTTCGCATGAGTTTGGACGTTTC 2510612 30 100.0 36 NNNNNNNNNN .............................. CATATAACAGTGCGACGAGACAGGCTGCGCACACCA 2510678 30 100.0 37 NNNNNNNNNN .............................. GGGGTAAATCATGTAAAACGAACAATTTTAGAATATA 2510745 30 100.0 36 NNNNNNNNNN .............................. CGTAGCGCTATTATGCGCGGTATGGCGCGGCTCTGC 2510811 30 100.0 36 NNNNNNNNNN .............................. CTTGCAGTAGGGGCAGTGAAAATTACACGACCCGAA 2510877 30 100.0 39 NNNNNNNNNN .............................. CTATTACCGCCGCCCGCACGGGCGCACGGCTGGCGTACG 2510946 30 100.0 38 NNNNNNNNNN .............................. GAATAAAAATCAGCGTAAAAACATATATGCTTACACGA 2511014 30 100.0 38 NNNNNNNNNN .............................. TTTTTTGTGGCCGTTTCGGCCTTATCTGTATCTACTGT 2511082 30 100.0 36 NNNNNNNNNN .............................. AGCCGACGCGATATATTCGTGCCCGGCAAACAAATC 2511148 30 100.0 36 NNNNNNNNNN .............................. CGCCGTACACGTGGTGATATTTATGAAACAAATTTT 2511214 30 100.0 36 NNNNNNNNNN .............................T GATATATTTTTCTAAACATTTTCATGACTTTATCGG 2511280 30 100.0 36 NNNNNNNNNN .............................T TGATAACTTTTAAAGTCTTTTTATCCTCTGCATTCA 2511346 30 100.0 37 NNNNNNNNNN .............................T ATTGTACACCTTGTCTACTTGCTCATCAGGGAAATTC 2511413 30 100.0 37 NNNNNNNNNN .............................T GTAATCCTCACACTGCCGATTATGGCTGAGTAATCTA 2511480 30 100.0 36 NNNNNNNNNN .............................T AGTTGATGCAAAAGGTTTATCGAAACACCTTCCTTC 2511546 30 100.0 37 NNNNNNNNNN .............................T CCTTATCTCAATGGTTTAAGGAAGACGTTGCGCGCAT 2511613 30 100.0 36 NNNNNNNNNN .............................T AGCCTATCTAAACGCCAAATAACTAATTTGTCTCCT 2511679 30 100.0 37 NNNNNNNNNN .............................T TCGGTTTGGTGATAGTTGGTAACAAGATTTTAAAACA 2511746 30 100.0 34 NNNNNNNNNN .............................T ATTACATCAGGATAGATGGTGTGGCGTATGAAAA 2511810 30 100.0 37 NNNNNNNNNN .............................T GAAGCTGGTAACCGCGGATGTCGCCTTCGGCCTCGAA 2511877 30 100.0 38 NNNNNNNNNN .............................. CCGCTACCCAAAAAACCCTCGACAAAATGCCCGAAATC 2511945 30 100.0 37 NNNNNNNNNN .............................. CACTGGGGCACATAGTCCTGATCTCCTCGGCGAGTAT 2512012 30 100.0 37 NNNNNNNNNN .............................. GAAAAGTGCTAATGGTAAAGTTAAACTTTCTCCTTTA 2512079 30 100.0 35 NNNNNNNNNN .............................. TTAGATGATCTTGCGGACTACAGTGCCGAATTTGA 2512144 30 100.0 36 NNNNNNNNNN .............................. GCAAACGGGGCCTTTTGTGCCATGTCACCAGTGCGG 2512210 30 100.0 37 NNNNNNNNNN .............................. AGAGACGTTCCTCCTGCGTTGTACAAGATACTCTGTA 2512277 30 100.0 34 NNNNNNNNNN .............................. AATTTAAGTGATGATGTAAAAACTGGTATTAATA 2512341 30 100.0 35 NNNNNNNNNN .............................. TTAGATGATCTTGCGGACTACAGTGCCGAATTTGA 2512406 30 100.0 36 NNNNNNNNNN .............................. TTCGCAATCGCTTCGACGGCAAAAGTGCCGCCCAGG 2512472 30 100.0 35 NNNNNNNNNN .............................. TGTTTATGTACGACTCTTTCAGTTTTAACTGCTTT 2512537 30 100.0 39 NNNNNNNNNN .............................. GATATAATGCTTACAATCGAGGCATTTAATAACATTAAA 2512606 30 100.0 39 NNNNNNNNNN .............................. CAATGTGTACGTTGTCATTGCCGGTATATTAGGATTCTT 2512675 30 100.0 35 NNNNNNNNNN .............................. AAGTGCCTTTGCCGTTAATTTTGTCAATGAGTTTC 2512740 30 100.0 38 NNNNNNNNNN .............................. GCGAAATCCTGCTCGTGCAGGGTGGAAGCAAGAATATC 2512808 30 100.0 38 NNNNNNNNNN .............................. AGCGTCATAGCATTCACACCGGCAGCACCAGTTACGAA 2512876 30 100.0 37 NNNNNNNNNN .............................. GTCGGACACGATGGGCAGAAATTCTTCTTCGACCATG 2512943 30 100.0 35 NNNNNNNNNN .............................. CCGTTAAATTGTCTGGCAAGGACGTGACGCCGGTA 2513008 30 100.0 36 NNNNNNNNNN .............................. CGTTGTAGAAATCGTCTTCGTTGATAACAAGTGTTA 2513074 30 100.0 37 NNNNNNNNNN .............................. GCTTCTTCGATTCTTCTTTTACCTCTCCGGTTTCCGT 2513141 30 100.0 1 NNNNNNNNNN .........T...................T NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 73 30 36 CTTTTAATCGGACTATCATAGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [212,1088] Score: 0.18/0.18 # # Final direction: F [4.91,0.18 Confidence: HIGH] >NC_016609 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 5986432 30 100.0 37 TTCTTCTCCT .............................. AATGTTACCGCTTGCCGTATAGATGCGTCCGATTAGC 5986499 30 100.0 35 TCCGATTAGC .............................. CCGACACCCGCATAAGTAAACACGCCTTTTGGTGA 5986564 30 100.0 37 CTTTTGGTGA .............................. TGTTGGGTCTGGTATTATTGGGTGGCTACTTTTTATA 5986631 30 100.0 37 ACTTTTTATA .............................. TCAGTCGCGCAATGTCTAATAAAAACAGGCTGGACAT 5986698 30 100.0 35 GGCTGGACAT .............................. ACAGATGTCGGCGCTTATGCGCGGGTTCTACTAAT 5986763 30 100.0 36 TTCTACTAAT .............................. TGTGGCACGCTACAAGCTATCCTGAGCAGGTTAAAA 5986829 30 100.0 36 CAGGTTAAAA .............................. AAACTCGATTCTTCAAGAGTTTCATAACACTATTGT 5986895 30 100.0 35 ACACTATTGT .............................. TACATGCGATTCCTAAAAGATACCGGCATACCTTT 5986960 30 100.0 36 GCATACCTTT .............................. TATGGCAACCCCTAAGAAGCAAACTCTTCAAGATTT 5987026 30 100.0 36 TTCAAGATTT .............................. CATATTGTCAGAAGAAGGCGCTTTGGGATCACCACT 5987092 30 100.0 36 GATCACCACT .............................. CAATTCTCCATTGCCGCCGACCTTTTCAATATTGAC 5987158 30 100.0 36 CAATATTGAC .............................. AATTTTACGATAGCGGAGCTTTTGCCTTCAAAATCT 5987224 30 100.0 35 TTCAAAATCT .............................. AGCTTTGTTTATTATTTGGCCATGGCTATAATCAT 5987289 30 100.0 35 CTATAATCAT .............................. GGTTGCGCCAGCAAGCGCCGAGCTTCCGCTGGTAA 5987354 30 100.0 37 CCGCTGGTAA .............................. GCTTTTCGCTGTTTTGGCCCTTGTGAGGCCTTTTTCA 5987421 30 100.0 36 GCCTTTTTCA .............................. AGCTTATCTACGTTCTCTTCTATAAAATCGTTATAT 5987487 30 100.0 36 ATCGTTATAT .............................. CCGGTTTGAGTTTGAAGACAAAAAAACTGCATTAAT 5987553 30 100.0 36 CTGCATTAAT .............................. ATCAGCACTAAAGCGGCAGTCGTACAACCTATTCAG 5987619 30 96.7 36 ACCTATTCAG .............................T ATCAGCGCTAAAGCGGCAGTCGTACAACCTATTCAG 5987685 30 96.7 36 ACCTATTCAG .............................T ATCAGCGCTAAAGCGGCAGTCGTACAACCTATTCAG 5987751 30 100.0 37 ACCTATTCAG .............................. AAGCCTGAACCCGTCGGCAACATACTCAGTCTGTTTG 5987818 30 100.0 35 AGTCTGTTTG .............................. CTTGGTGGCGTGGAAATACCAGTGACATTCAACTT 5987883 30 100.0 35 CATTCAACTT .............................. TGGAAAGACCCATTAAAAACCTGCCTGATGGCAAT 5987948 30 100.0 36 TGATGGCAAT .............................. TAGAATGGCACATGGTCATTATTCCTGGCAGATCGA 5988014 30 100.0 36 GGCAGATCGA .............................. CGTTGTGTGCGAATTAGTTTTTCATATGGCAAGCAA 5988080 30 100.0 34 TGGCAAGCAA .............................. CTGAATAATGGACCTAGTGTAGGGTGTGTTTTGA 5988144 30 100.0 35 TGTGTTTTGA .............................. CACAATATCCGTCGAGTTTAGAGACTTGTCTCATA 5988209 30 100.0 36 TTGTCTCATA .............................. GGGCGGAGGTGTTAATGCAAATTGGTTTGCACCTGG 5988275 30 100.0 34 TTGCACCTGG .............................. CACCAAACCCTTTATTTTGAATATTGAAAACCAA 5988339 30 100.0 35 TGAAAACCAA .............................. TTTACCAGGCCTGCGCAATGTAGTCAACCAGGTAT 5988404 30 100.0 35 AACCAGGTAT .............................. GCGGTCAGCGACCCCGACTACGTTTACCTCATTAA 5988469 30 100.0 35 ACCTCATTAA .............................. ATAGATGAAGACCCGGACCTGTATACCGGTGGTTT 5988534 30 100.0 35 CCGGTGGTTT .............................. TAATCGTTACCCAAACAAAACCCAAAGTGTACGTA 5988599 30 100.0 37 AGTGTACGTA .............................. TTCCCTGGGTGTTTCTCCTCTTGCCTGAACGAACGAC 5988666 30 100.0 36 AACGAACGAC .............................. CGGCTTTATATGGGCTGTCCTAGTCAACAGATGAAA 5988732 30 100.0 33 ACAGATGAAA .............................. TGGGTGGCCGTTTTAAAATATTGCTCTAATTCG 5988795 30 100.0 37 CTCTAATTCG .............................. AAGGCCCGCCGCTGCGATCGTGAATTCCGTGTATTTA 5988862 30 100.0 36 CGTGTATTTA .............................. CCCTGGCCCGCTATATTGCACGATGGTACTCGCCTT 5988928 30 100.0 36 TACTCGCCTT .............................. AAGTCAGCGTACCCCCGATACCTTCAGCACTTTCAT 5988994 30 100.0 36 GCACTTTCAT .............................. CCTACCAACACCCCTGTTGGTTTAAAAAAGAGTTTA 5989060 30 100.0 36 AAAGAGTTTA .............................. CCGGTATAGCGTAACAGGTACCGACAGGCATGCTGT 5989126 30 100.0 36 GGCATGCTGT .............................. TGCACGCTGGCCGGGCTCTTTTAAAAGCAAATATCA 5989192 30 100.0 35 GCAAATATCA .............................. TGTATAGGGATAATGTCATATCAATTATGTTTTAT 5989257 30 100.0 37 TATGTTTTAT .............................. CGGGAGATCATTAAGGGCATGAAGGAAGGGTCCATCT 5989324 30 100.0 36 GGGTCCATCT .............................. CGATGGCAAAAAGGTTCCCGTAAAAGTTACAACCAT 5989390 30 100.0 36 TTACAACCAT .............................. TTATTATACCGCCAACCAAACCGGGCGGAATCAACA 5989456 30 100.0 37 GGAATCAACA .............................. CAGCACCCGTAAATAATACATCGTCTAACAATGGTAG 5989523 30 100.0 36 ACAATGGTAG .............................. TTATTATACCGCCAACCAAACCGGGCGGAATCAACA 5989589 30 100.0 36 GGAATCAACA .............................. GCTATCACCAAACCTATTTTGAATCCTAACTCTCCA 5989655 30 100.0 36 TAACTCTCCA .............................. AATAGGTGATTTGCGAATCACTTTAAAGGATTATTT 5989721 30 100.0 36 AGGATTATTT .............................. AAGTCCCAAAAAACAAAAGCCGTTGAAATCAATATA 5989787 30 100.0 34 AATCAATATA .............................. AAAAAACCCGCTAAAGGAGCGGTCGATTATAACA 5989851 30 96.7 GATTATAACA .......C...................... CCGTTTATTA ========== ====== ====== ====== ========== ============================== 53 30 35 GTTTCAATTCCTCCATGGTGCGATTATAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.90,-0.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [428,209] Score: 0.18/0.18 # # Final direction: R [0.59,4.77 Confidence: HIGH] >NC_016622 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1897485 37 100.0 35 CAGCCCACCT ..................................... TCGCTGTCCAAGCAGATGCAGACCGAGGTCGGAGA 1897557 37 100.0 38 AGGTCGGAGA ..................................... GAGACGGTGGACCTGAACAGCCTCAATATCGTGGGTGA 1897632 37 100.0 39 TCGTGGGTGA ..................................... TTACCCGGCGCGGGGCCGGTGCCCCGGCCCCGCGCCGCC 1897708 37 100.0 41 CCGCGCCGCC ..................................... GCAGTTGGCGTCACGATCGTCCGGATCCGTGGGCAACGCAC 1897786 37 100.0 37 GGCAACGCAC ..................................... GAGCGCAGCGCGATGACGCTCAATCAGGTGAGCCAAC 1897860 37 100.0 38 GTGAGCCAAC ..................................... ACCTGGGCCGGGTCCAGCATGCCGTATTTCGCCGTCAG 1897935 37 100.0 40 TCGCCGTCAG ..................................... TTGTTGAGGGCGCTGAATGCCTCGATGTCGCGGGTGGCGC 1898012 37 100.0 36 CGGGTGGCGC ..................................... GTCACGCGAATGACGCCCGTCCAGTCGGTGGAGCAG 1898085 37 100.0 38 GGTGGAGCAG ..................................... GTCGACGCGCAATGCCTGTTTCTCGCCCGCCAACCGTT 1898160 37 100.0 37 GCCAACCGTT ..................................... TGTTAGTCGCATTAGCGACCCCGGATACCCTCAATGC 1898234 37 100.0 37 CCCTCAATGC ..................................... CCTCAACGACAGACAGTCCATCCCCGGCGGCGGCATT 1898308 37 100.0 35 CGGCGGCATT ..................................... AGGAAACTCGTCAACGAGGGCCGCGTCACGTCAGA 1898380 37 100.0 35 TCACGTCAGA ..................................... GTGACAAGCCAACTTTGGAATATTGGCCGGCCATT 1898452 37 100.0 36 GCCGGCCATT ..................................... TACTTGGTGAGGAGGCGCTCAGTCGCTGCACTCACG 1898525 37 100.0 37 TGCACTCACG ..................................... AGTGATCGGTCTGGCGCAAGATGATGAAGTCATCGGT 1898599 37 100.0 38 AGTCATCGGT ..................................... GCCTCCGGCGGCGGGCCGACCATCTCGCCAACGCGGCG 1898674 37 100.0 37 CAACGCGGCG ..................................... ACGAATCCGGATCCGCGCTCTGTACGCCATGTGAAGG 1898748 37 100.0 37 CATGTGAAGG ..................................... CATGGAAATCGCCGGGTAGACCTCAGTCCACGATCCC 1898822 37 100.0 38 CCACGATCCC ..................................... AATGCACTCCCGCAGATCGGCGATAGCCCCCCGCAGAC 1898897 37 100.0 39 CCCCGCAGAC ..................................... TTCCACCGTCCATGGACGGTTGGCGTCCGCCTCGCCCCG 1898973 37 100.0 40 CCTCGCCCCG ..................................... CAAGCGGAGAGGAGTTTAGCCCTGTCGACGTCGGTTGCCA 1899050 37 100.0 39 TCGGTTGCCA ..................................... AAGGATCGGTATCGCGCAGTTGCTGAGCGCCCAGTCGAG 1899126 37 100.0 41 CCCAGTCGAG ..................................... ATGGTGGCACCGGGGCGCAGAACATTGTCGGCGTAGAGCAC 1899204 37 100.0 36 CGTAGAGCAC ..................................... GTCACCGGCTCGATCAGGGCCGGCTCGTCCCCGTCC 1899277 37 100.0 37 GTCCCCGTCC ..................................... ATGTCTGACAGCCAGCACCGTTCGGCCGACGTCGCCA 1899351 37 100.0 36 GACGTCGCCA ..................................... CGGCACCGGCGCCGGTCAGCGCCGCACCATCGCCGC 1899424 37 100.0 38 CCATCGCCGC ..................................... GGATGCTGCCATGGCCTGCCGCTCCAGTGTGTGGGCGT 1899499 37 100.0 38 GTGTGGGCGT ..................................... AAGGTCTCCACCATGCACAGCGGCATAGACCTCGCTGC 1899574 37 100.0 41 ACCTCGCTGC ..................................... TCGCAACAACTGTCCGTGAGTGTCTGTATGGTGGTGCTGCG 1899652 37 100.0 36 TGGTGCTGCG ..................................... CACACAAGGAAACCAAAGACGCACTGTGGCGGCGGG 1899725 37 100.0 38 TGGCGGCGGG ..................................... TCGCTTTCCGGAGTCTGTGCCATCTGCGGACGGGCAGG 1899800 37 100.0 37 GACGGGCAGG ..................................... AACTTGGCCGATCAATGCGCGCCTGGATGTCTGCGAT 1899874 37 100.0 38 TGTCTGCGAT ..................................... CTCCGTGGAGCCATTCACCGCCCGTCGCCGCGGCGTGC 1899949 37 100.0 38 CGCGGCGTGC ..................................... CCTTGCTGGTGACGTGAGCACCTCCAGCATAGGGCAAG 1900024 37 100.0 37 ATAGGGCAAG ..................................... GCACCTGGGCGAGACGGGCAACAACCTGCAACGCCTG 1900098 37 100.0 39 GCAACGCCTG ..................................... CAGCCGGGACATCGACCACGACACCGATAATATCTCCGC 1900174 37 100.0 36 ATATCTCCGC ..................................... AAGCGTTTGCGGCGCCCGTCTTCGTGCGTGACGATC 1900247 37 100.0 37 CGTGACGATC ..................................... AGCCAGATCGGCGGGGGCGAAGCCCTGAGCCGCGCGG 1900321 37 100.0 37 AGCCGCGCGG ..................................... GCGTCGACGATCAACTCGAACTGGCCGGGGTACGGGT 1900395 37 100.0 36 GGGTACGGGT ..................................... AATACCCTGGTAGCCAGCCCCGGTTAGGCGGCGTTC 1900468 37 100.0 37 GGCGGCGTTC ..................................... CTCGGCTCCCGGTGGAGGTGGAGATGCGGCGACCATG 1900542 37 100.0 37 GGCGACCATG ..................................... AAGGAAGCGGAGACCAGACGGGCCGACCAGATCGACC 1900616 37 100.0 41 CAGATCGACC ..................................... TACACCTCGACCGGTGCGCCGAAGATCACGGGGACCAACGC 1900694 37 97.3 36 GGACCAACGC .........A........................... AAAGATAGCCGCGCAGATGATCTGTTGACGCAGGCG 1900767 37 100.0 37 GACGCAGGCG ..................................... GCCCACATGAACGCCCTGCCCGTTGCGGCCAAGGCCA 1900841 37 100.0 36 GCCAAGGCCA ..................................... TCGCTCATGACGATGGACTGCGTGGCGTGGCAAACG 1900914 37 100.0 36 GTGGCAAACG ..................................... CACCTATGGGTGGAATGGTGGCGGTGAAATAACGCG 1900987 37 100.0 36 AAATAACGCG ..................................... GTGGATCAGGGTGGCGGCTTCGTCGTTGCAGTAGGC 1901060 37 100.0 38 TGCAGTAGGC ..................................... CTGATACCGGCGGTGTAGACCTTGTCGTTCAGGCCCTT 1901135 37 100.0 38 TCAGGCCCTT ..................................... GATCCCATCGGCACGACCGACGATGCGGGGAACTGGTG 1901210 37 100.0 37 GGAACTGGTG ..................................... CAGAACCCGGCCCAGCCACTTCACTTTTTCCAATAGG 1901284 37 100.0 37 TTCCAATAGG ..................................... AAGTTCGAGCACAACGTTGACGGTCTGGTGCGTGGCG 1901358 37 100.0 38 GTGCGTGGCG ..................................... ACGCGCTGGCCCGGCGCCTGCGCGGCGATGAAGCCCTG 1901433 37 100.0 36 TGAAGCCCTG ..................................... GGCCTGTCGATCGACGCCGAGGGCAAGGCCAAGACG 1901506 37 100.0 37 GGCCAAGACG ..................................... TGCCCAACGGTGGCACCCCGCTGTGTCGCCATCGCTG 1901580 37 100.0 37 GCCATCGCTG ..................................... CGCCCTTCCGGTAGACCTCCCGACCCTCATTCCCGTC 1901654 37 100.0 35 CATTCCCGTC ..................................... TGCTCCCAGACGATCGAGGTCAGCGCGTGGCAGAC 1901726 37 100.0 37 CGTGGCAGAC ..................................... TCGATCTCCGCGGCCGACGTGGTGCCCTGCCAGAAGC 1901800 37 100.0 36 TGCCAGAAGC ..................................... GATTTGGCCAAGGTCACCAGCGATCCCGAGGCCGCG 1901873 37 100.0 36 CGAGGCCGCG ..................................... AAGCACCATCCGCGCCGGGGCCGGGTCGACCGCTTT 1901946 37 100.0 35 CGACCGCTTT ..................................... GTGCCGTGCTCTGGCAACTCGACGCGGACCCGTCC 1902018 37 100.0 37 GGACCCGTCC ..................................... GTCAGCACGACGTCTGACATGACGATCACCTTGGAGG 1902092 37 100.0 36 ACCTTGGAGG ..................................... ACAAATCGCAGCGGCAATCTCTGACGTGTAGGACGA 1902165 37 100.0 37 TGTAGGACGA ..................................... CAGGTCGCCGGTCAGCTGCTCGTAGGTCACGCCCATG 1902239 37 100.0 38 CACGCCCATG ..................................... AAGGCGAAGCTGGGCATCCCGTGGGTTGGGCTGTCGAT 1902314 37 100.0 37 GGCTGTCGAT ..................................... ATCTTCCTGGGGCAGGGCGCCACCGGCTCCTTTGCCC 1902388 37 100.0 37 TCCTTTGCCC ..................................... AACACGCTGCTGGGAGTTTCCACCGGCGGCCCGAGGT 1902462 37 100.0 37 GGCCCGAGGT ..................................... ACGACCGCCAGCTGCATGGCCGCCTGGATCACCTCCG 1902536 37 97.3 39 ATCACCTCCG ..A.................................. GCAGCTACCTCAGCGAGGCCCTGCGGATGGCCTGGAATG 1902612 37 100.0 38 GCCTGGAATG ..................................... GCTATGTCGCCAAAGCAAGCGGTGGCAGGCTGTACGTC 1902687 37 100.0 36 GCTGTACGTC ..................................... TCGTGCGGGAAAGACGGGTCGGTGGCAGCAACGAAA 1902760 37 100.0 38 AGCAACGAAA ..................................... AGCTCCGCCAGGAAAATGGCGATGGCGGTCCAGTCCGG 1902835 37 100.0 TCCAGTCCGG ..................................... AAGTGGCAGC ========== ====== ====== ====== ========== ===================================== 73 37 37 GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-19.40,-18.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [43.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [231,1778] Score: 0.18/0.18 # # Final direction: F [1.42,0.18 Confidence: HIGH] >NC_016625 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1473412 28 96.4 33 ATATGCGCCG ...................A........ TAGACGGCTCCGTGTAACGCCCTCTGTCTTGGG 1473473 28 96.4 33 CTGTCTTGGG A........................... TCGCAGTACTGGCCGATGGCGTAAAGCCCCCAC 1473534 28 96.4 33 AAGCCCCCAC .............G.............. CGGCCTTGTGGATCATGATACGTCCCCGTGACG 1473595 28 96.4 33 CCCCGTGACG .................A.......... TCGTCGATCCGATCCAGTTTCACGCAGTAGTAT 1473656 28 96.4 33 GCAGTAGTAT ...........A................ ACAGATTTCGGCCCTTACACGCTGCGCCTCGAC 1473717 28 96.4 33 GCGCCTCGAC ..........T................. CGCCGGGCGTCGTTCAGTACGAGGAGGGTCCGG 1473778 28 100.0 33 GAGGGTCCGG ............................ TGAAACGATTGGTGCAATTGACGATGGATATCG 1473839 28 100.0 33 ATGGATATCG ............................ GAGCGCGCTGTAGCCCATGCCCTGCGCGATGCG 1473900 28 100.0 33 GCGCGATGCG ............................ CCCACCCCTGACGACAGAGGGCGACTCGCTCCC 1473961 28 100.0 ACTCGCTCCC ............................ TCTCCCTCAT ========== ====== ====== ====== ========== ============================ 10 28 33 GGTCTATCTCCGCACACGCGGAGGAACC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-10.50,-10.50] Score: 0/0.37 # Array degeneracy analysis suggestion: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [43.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [421,93] Score: 0.18/0.18 # # Final direction: R [0.55,0.68 Confidence: LOW] >NC_016627 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2476324 37 97.3 38 TGAAGATTTC ....................A................ TGGGAGTATACCCCAGAAAAAACTTATGAAATAACAGA 2476399 37 100.0 37 AAATAACAGA ..................................... TTTGGAGGGGACAATATGACGCGATACGAGAAAAGGG 2476473 37 100.0 37 GAGAAAAGGG ..................................... TAGCTGATTACAGTAGCTGGTTTGAGTCTTATTTATA 2476547 37 100.0 36 CTTATTTATA ..................................... TAGAGAATCTAGGTGTGGAGACCGCCAATAAGCTGT 2476620 37 100.0 36 AATAAGCTGT ..................................... CCCTGTGCCTGACCACGCAACCACCTCCAAACTTTA 2476693 37 100.0 40 CCAAACTTTA ..................................... AAGGTCTTCCTTTGTCGGTAAAATTATCACTGTATGCAAG 2476770 37 100.0 37 TGTATGCAAG ..................................... CATATTAGTGGAGGCATTGAAGAGCCTTGAAATTGAG 2476844 37 100.0 38 TGAAATTGAG ..................................... CAATTTATACCGAAAGTGAACGAAAAACAGCATTGTAA 2476919 37 100.0 36 AGCATTGTAA ..................................... TAATTATATTTTCACGTATATAGGTATATCTGTTCT 2476992 37 100.0 36 TATCTGTTCT ..................................... CATGTTGATTTGAGATACACTTATGTAATCCTTTGG 2477065 37 100.0 36 AATCCTTTGG ..................................... TAGATTCTCCCCGAAAAATTAAGTGTTGGGATAATG 2477138 37 100.0 36 TGGGATAATG ..................................... TCATCATCGAGTTGCGCAAAAATCTTGATGAGTTGT 2477211 37 100.0 36 GATGAGTTGT ..................................... TAATATTTACAGTTAATCATCTACACTCACCGCCTT 2477284 37 100.0 39 TCACCGCCTT ..................................... TATCGCCAGCCACCTCAAACCGAAAGTTGTCAACTTCCG 2477360 37 100.0 35 TCAACTTCCG ..................................... ACCACATACGATCAATTTTATCTTGCCCTATAATA 2477432 37 100.0 36 CCCTATAATA ..................................... CAATTGCGGAAGGTTTAGCGGCTTTATGGCAAGAAG 2477505 37 100.0 35 TGGCAAGAAG ..................................... ATTTACTATTTGCGAAAGATTTATTTCATTTTCTC 2477577 37 100.0 36 TCATTTTCTC ..................................... ACTGTGAACTCCACGAAATCACTCAAGAAGAGTTTT 2477650 37 100.0 36 GAAGAGTTTT ..................................... GGGGCTTTGGAACTACAGGAACAAATGTCGACGACT 2477723 37 100.0 36 GTCGACGACT ..................................... TACCTAACGAATTCCCTAAGAATCCACGTTTGTTTA 2477796 37 100.0 39 CGTTTGTTTA ..................................... CTGCAATTCTCTTAATTTATCTCGGATATCCATCAATGC 2477872 37 100.0 40 CCATCAATGC ..................................... CTAGGATGCCCTCCTAGTTCTAGGCTCTGTCGTATAGCAT 2477949 37 100.0 35 CGTATAGCAT ..................................... GAAGAAGAACAAAGAAAACTTTGGGAAGATAGCAA 2478021 37 100.0 36 AAGATAGCAA ..................................... TGATGATGGAGTCTATCTGAAAATATTTGTTCAGGA 2478094 37 100.0 36 TTGTTCAGGA ..................................... ACCTCTTTTGGCGGATTCTTTATGTGATGCAAGATA 2478167 37 100.0 37 ATGCAAGATA ..................................... TGAAATTGACAAAAAGCAAAAGCCAAACTGTCCAGGC 2478241 37 100.0 36 CTGTCCAGGC ..................................... CTGTAACATAGCAATTGCTGACGAAATTCATGCATT 2478314 37 100.0 36 TTCATGCATT ..................................... ATATATACACCCCCTACAAGTAGCTTGGAGCAAACT 2478387 37 100.0 37 GGAGCAAACT ..................................... CTGTCTTTCCCTCCTGATACAGAAAAGTATATATTAT 2478461 37 100.0 38 TATATATTAT ..................................... CTATATTTATCTATAGCTATATGTCCTGAAGCTATGGA 2478536 37 100.0 36 AAGCTATGGA ..................................... TGCAGCAACAGGCCTCAAATACTTTCAGTTATATCT 2478609 37 100.0 AGTTATATCT ..................................... AGCCCGTAAA ========== ====== ====== ====== ========== ===================================== 32 37 36 GTTTCAATCCTTATTTTTATGGAACATCTACTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.27%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.30,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [158,282] Score: 0/0.18 # # Final direction: R [0.37,4.91 Confidence: HIGH] >NC_016627 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2496169 37 100.0 39 NNNNNNNNNN A..AAGTC...GT...........A.A.......... GATGTGTACTACGACCTAAGCGCCGCGTGTGTCAGGTGT 2496245 37 100.0 36 NNNNNNNNNN .................G.....A............. TGCTGACCTTGAGTTTACAGCATTGGCAACTGTTAT 2496318 37 100.0 38 NNNNNNNNNN ..................T....A............. ACGCTCATCACGTACACACGATTTCCAGTCGCACTTAT 2496393 37 100.0 36 NNNNNNNNNN .......................A............. GTATCTTGAAGGGCAAAGCTTTGTAGGTAATTATGA 2496466 37 100.0 36 NNNNNNNNNN .......................A............. TACAGCAGTTACTTATGCATTATATCAACAAATAAA 2496539 37 100.0 36 NNNNNNNNNN .......................A............. CAGCCAATCCCAATATAACCGCCGTGGCTATTTTGA 2496612 37 100.0 36 NNNNNNNNNN .......................A............. GTTCGCCTGCAAAGTTATTTCCTATTCTAGCAATTG 2496685 37 100.0 39 NNNNNNNNNN .......................A............. ATTAATAGAAAAATGGAATAATACAGACCCATATATTTA 2496761 37 100.0 36 NNNNNNNNNN .......................A............. ATTGACGGTCTGCTGTTATACCGTCTATAAAAAAAA 2496834 37 100.0 41 NNNNNNNNNN .......................A............. TATTAATATAACATATAAAACATTGAGATATTACAAGAAAA 2496912 37 100.0 38 NNNNNNNNNN .......................A............. TTTCCCACCATGAGAACCAAAATCATCAACTTCTTCTA 2496987 37 100.0 36 NNNNNNNNNN .......................A............. CAAGACAGCGACACCTATAGGCAATGGACTATTTTA 2497060 37 100.0 38 NNNNNNNNNN ..................................... AATAGATGCCAAAGAAATGGGAGACATTGCAAGAAAGA 2497135 37 100.0 37 NNNNNNNNNN ..................................... TTAACTTGTTGCCTGCCATTATGGCACCCTCCTTTCT 2497209 37 100.0 37 NNNNNNNNNN ..................................... CAAAACAATACGCTGTATAAGGGTCAGTTATATCTAA 2497283 37 100.0 38 NNNNNNNNNN ..................................... AAGTATGCAGACCGAATCAAGGAAGAACTTAAGGTTAT 2497358 37 100.0 36 NNNNNNNNNN ..................................... TCGGCGAAGAATGGTTTAACAGATTGTCCGAACTCG 2497431 37 100.0 36 NNNNNNNNNN ..................................... CAGAACCTCCAAACCAAGTGATGTTTAATTTGCGAA 2497504 37 100.0 36 NNNNNNNNNN ..................................... TACGGTATACGCAGGAAAAAAAGACATCGAAGGCAT 2497577 37 100.0 36 NNNNNNNNNN ..................................... TATATTATGGAAGTTTGTGAGACTCACACTCACTAG 2497650 37 100.0 36 NNNNNNNNNN ..................................... CTGTTTTAATAATTGATATAATATCTGGATCATAAT 2497723 37 100.0 39 NNNNNNNNNN ..................................... CAGGTATGATGGTGCAAATATTTTCTACGGCTATGTTTT 2497799 37 100.0 39 NNNNNNNNNN ..................................... ATTTGTAGACGGATTAGGAGCATTAAAGCAAGCCATATA 2497875 37 100.0 37 NNNNNNNNNN ..................................... TTAACACCCTTGTGCTGATTGAGGAGCTGACCGTAAC 2497949 37 100.0 37 NNNNNNNNNN ..................................... AGGCTTTTTTAAGGAGAATATATGAAGTAATATGTTT 2498023 37 100.0 39 NNNNNNNNNN ..................................... CAGCATTAATAAGCTGATTTACCTTTACAATAACTTTAT 2498099 37 100.0 37 NNNNNNNNNN ..................................... TTAAAAGTCCCATCTCTAATTTGCATATCCTCACTCT 2498173 37 100.0 39 NNNNNNNNNN ..................................... TTTAGGATATTTTGCCTGTAAATCTAATAGATATTTAGT 2498249 37 100.0 36 NNNNNNNNNN ..................................... ACGAACTTGAGGAAATAATGGCGGAATTACCGCTGC 2498322 37 100.0 39 NNNNNNNNNN ..................................... TTTAGGATATTTTGCCTGTAAATCTAATAGATATTTAGT 2498398 37 100.0 36 NNNNNNNNNN ..................................... ACGAACTTGAGGAAATAATGGCGGAATTACCGCTGC 2498471 37 100.0 38 NNNNNNNNNN ..................................... GAATATAAGTGATAAGTTAGGAAGCTTAACTGATGCAG 2498546 37 100.0 39 NNNNNNNNNN ..................................... GGAGTTATATTATCTGTTGAATACGGTGTATATGCTTTA 2498622 37 100.0 36 NNNNNNNNNN ..................................... ATATACTGAGATTAGACATACAATCACCTCTTTTAA 2498695 37 100.0 39 NNNNNNNNNN ..................................... CGTGTTAATCCGATTGTTAACCTATTTGTCAATTTAGAT 2498771 37 100.0 40 NNNNNNNNNN ..................................... GATACTATCTCAAAACCCTCGTCGAGAGATCCATCTTCTT 2498848 37 100.0 39 NNNNNNNNNN ..................................... TTAATTTTTTATCATTGCAAAACTGTTTAAGCCAAAAAG 2498924 37 100.0 37 NNNNNNNNNN ..................................... TTAATTTGCACAAGGAGGTGCTGGCAGGGTTTATCCC 2498998 37 100.0 37 NNNNNNNNNN ..................................... AATATACCAAGATATTCAATGCTAACAGGGATAAAAT 2499072 37 100.0 36 NNNNNNNNNN ..................................... CTGTTTTTTCAATTTCAAATATTCTTTTTGACATTT 2499145 37 100.0 40 NNNNNNNNNN ..................................... AACATTTGGAAAATCTTTGGCGTACCATCCATAGACCCGA 2499222 37 100.0 38 NNNNNNNNNN ..................................... CAAGAGAGATTTAAACAAGAAAAATACAGGTTATTGAA 2499297 37 100.0 36 NNNNNNNNNN ..................................... AAACACAAAGCGGCGGGGTTGCTTGCAAAAAGCACA 2499370 37 100.0 39 NNNNNNNNNN ..................................... TAGATAATTCACAAGAAAAAGCAAAGGTTGAAAAATATT 2499446 37 100.0 40 NNNNNNNNNN ..................................... TGATTACAGAAATGGGATACAATGCAATAGCAGAAGATAG 2499523 37 100.0 38 NNNNNNNNNN ..................................... GGGTTGCCATTAAGTGTAAAGATGTCCGTTTATGCAGG 2499598 37 100.0 37 NNNNNNNNNN ..................................... TGAGCATTCTGCAACCAAATGAATGGAAGATACTCAA 2499672 37 100.0 35 NNNNNNNNNN ..................................... TATAGATTGGTTTGAGTTATATTTAGATGATATTT 2499744 37 100.0 35 NNNNNNNNNN ..................................... AAAAATTACGGAAAAAAAGAGGTTACAATATCTGG 2499816 37 100.0 38 NNNNNNNNNN ..................................... TAATATAACAGGCATATTTACAGTGAGTACGGGCAGCT 2499891 37 100.0 35 NNNNNNNNNN ..................................... CGGGGGCGTGAATCTATGTAAAGCCATCATGGCAT 2499963 37 100.0 38 NNNNNNNNNN ..................................... ACCTCTCCATATTTTTGTAATATTCCTTGACCATATTG 2500038 37 100.0 37 NNNNNNNNNN ..................................... TAAATTCGACCATGCGATTTGTTACTGGATCTCCAGC 2500112 37 100.0 35 NNNNNNNNNN ..................................... ACGATAAATTTGCTCCTGCTCTTTCAACAAGCAGA 2500184 37 100.0 35 NNNNNNNNNN ..................................... CTTAACCTGCTCGACTGAGAACATCTCGGCTGGAA 2500256 37 100.0 36 NNNNNNNNNN ..................................... GTTTTTTTAGTTTCGTCATAATTGCCATATTTAATA 2500329 37 100.0 38 NNNNNNNNNN ..................................... GCCAACAACGTAAGCAAAGGAAATTATTTCTTTGTACC 2500404 37 100.0 40 NNNNNNNNNN ..................................... TTGAAGAAACTGCTAAAAATTTGATTTCTACATTGTTAAA 2500481 37 100.0 36 NNNNNNNNNN ..................................... TACTAACAGAAAAACACCTGATTTTACAAAAATTTT 2500554 37 100.0 39 NNNNNNNNNN ..................................... AATGCTTCGTGAAACCTCACAATTTCGGTACCTTTATGA 2500630 37 100.0 37 NNNNNNNNNN ..................................... GCTGACATTTACAATTTTATACAGTTGGCAAATTGGA 2500704 37 100.0 41 NNNNNNNNNN ..................................... AAGGAGTGAGTATAGCAATAAATACAGCACTAGCAATTGTT 2500782 37 100.0 37 NNNNNNNNNN ..................................... TGCACAAGAGATAAGAAGGTATCTTATAGACTGTGAC 2500856 37 100.0 37 NNNNNNNNNN ..................................... ACAACTGCGCGCATCATTATCTCAATCAAACACCTCA 2500930 37 100.0 36 NNNNNNNNNN ..................................... TTGGTATACAAAGGAAGTGGAAGATGACGGAGAAGT 2501003 37 100.0 37 NNNNNNNNNN ..................................... AACATGCAACATATAACAAGGTTTTAGCAGAACAATT 2501077 37 100.0 38 NNNNNNNNNN ..................................... CCCCTCAATAATCTGGGTAATCTTTTCGTTTCCTTAGT 2501152 37 100.0 37 NNNNNNNNNN ..................................... AAATAGATGTACTTTATATTGATTTAGAAGCTCAATA 2501226 37 100.0 36 NNNNNNNNNN ..................................... ACAACCTATTATATATAATAGGTTACGCGTCCATAA 2501299 37 100.0 36 NNNNNNNNNN ..................................... ACCCACAACAAAGAAAAGATTTTTTCGCAAAATCAC 2501372 37 100.0 37 NNNNNNNNNN ..................................... TCTATGTTGCCACTCTCATCAGGATCGGCCTCGCAAA 2501446 37 100.0 38 NNNNNNNNNN ..................................... TGGATATAGGGCTGTATTAAAAGATGTTGTTAACGGAA 2501521 37 100.0 36 NNNNNNNNNN ..................................... GCTCATTGCTTTCGCTTCCCTACATGAACTCAAAAA 2501594 37 100.0 37 NNNNNNNNNN ..................................... TTGACCTGATGATTGTACAGTTTTATTCCAATGTAGA 2501668 37 100.0 38 NNNNNNNNNN ..................................... AGCAGCTCGTCAAAAAGAGCTCGAAGAGCTCCGCCAGT 2501743 37 100.0 37 NNNNNNNNNN ..................................... TGTATGTAGAACTTGATGCGAAAGCACGTCAATTGTA 2501817 37 100.0 36 NNNNNNNNNN ..................................... CCTTCGATATTTCCCTGCACTTCCATATTTTCTCAA 2501890 37 100.0 40 NNNNNNNNNN ..................................... ATTAATATGAAAATTCCATCATAATTATTGTAACATAGCA 2501967 37 100.0 38 NNNNNNNNNN ..................................... TTTTCTCAGGCTTATAATATCTACGAACATTATCACGA 2502042 37 100.0 1 NNNNNNNNNN ..................................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 80 37 37 GTTTCAATCCTTATTTTACTGGATGTTCTACTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.70,-2.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [80.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [230,272] Score: 0/0.18 # # Final direction: R [0.64,4.91 Confidence: HIGH] >NC_016627 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3016571 29 100.0 36 CTGTGCTATT ............................. ACCGACTTCGAAGTTATACTGGTCGTTTTGACAATG 3016636 29 100.0 35 TTTGACAATG ............................. TGAAGTATAATTGTGCATTTTTGTTCTTTAAGAAG 3016700 29 100.0 36 CTTTAAGAAG ............................. GTTGACAGCTAGCACTAGTTATAATGTAATAATTGT 3016765 29 100.0 36 TAATAATTGT ............................. GAGCAATGGAAAAACTGCCTCGAACCTCATAGATGA 3016830 29 100.0 38 TCATAGATGA ............................. TCATGTTCTTTACAGCTAAATCTTCGCTGATTATTACT 3016897 29 100.0 36 GATTATTACT ............................. TAACGGATTAATGAAAACCCCGAACTGTTGGTATAA 3016962 29 100.0 36 GTTGGTATAA ............................. CGGATATGTGCCATCCTTGACCTTCTCCCAGACATC 3017027 29 100.0 38 CCCAGACATC ............................. TTAACTTCTTTATTTTTAATTGCATTTCTCCAATAATC 3017094 29 100.0 35 TCCAATAATC ............................. GTACAGGAGTAAAAATGCCATTGGGTATAGCTACT 3017158 29 100.0 35 TATAGCTACT ............................. TTAACTTATACAAAATTAAAAGACTTTCCAAATGG 3017222 29 100.0 36 TTCCAAATGG ............................. TGAAAAAGTATCAGATATGAATATTTTAATACAAAA 3017287 29 100.0 35 TAATACAAAA ............................. GGTTCCTGGTGTAGGAGGTAAAGGCATTAATATTA 3017351 29 100.0 35 ATTAATATTA ............................. TTAATTTCAATCATCTCCTTTTTTGTTATATAATA 3017415 29 100.0 36 TTATATAATA ............................. TGAGAAACTGGAGACAGAGATTGCGGAACTAAAGAA 3017480 29 100.0 39 AACTAAAGAA ............................. GGAATATGAATTCAGACCTAAAAATGCAGAATTTGTCAT 3017548 29 100.0 40 AATTTGTCAT ............................. TTGAAGACCAGACAGTCTTCAAAGGAACAGCAAGATATGA 3017617 29 100.0 35 CAAGATATGA ............................. GAAATTGTTTTTGTAATCAACCAATATGATTATTC 3017681 29 100.0 36 ATGATTATTC ............................. TTTGTGGTTCTGGATTTTTATTAATCCTTCATTTTT 3017746 29 100.0 37 CTTCATTTTT ............................. GTTCTTGAGTTTGTATAGACAAACTTTTAAATTCTCC 3017812 29 100.0 36 TAAATTCTCC ............................. GAATATGTTGGAGATGGTTATACAAGCAGTTGAAAA 3017877 29 100.0 35 CAGTTGAAAA ............................. TGGCTTGTAGCAAAGTCATATATTCCAACAATATC 3017941 29 100.0 37 CAACAATATC ............................. CTTTTGTTAGGGCGTATAAGCCGTATTTTGATGATAC 3018007 29 100.0 36 TTGATGATAC ............................. CAACCATCCACACTGTCGACTTCTCGACCAATCCAC 3018072 29 100.0 37 ACCAATCCAC ............................. TATGATGGTACAAAGTGGTTCTTATCCCAATATGATA 3018138 29 100.0 36 CAATATGATA ............................. GCGATATAGTCAACACCCTTCGGCGTGACGAATGTC 3018203 29 100.0 35 GACGAATGTC ............................. GACCCTATAAAAAGCATAAGTTCATATTCATTTTC 3018267 29 100.0 35 ATTCATTTTC ............................. CAACATAGATTATACAAATCCGAAGGTCCACGAGA 3018331 29 100.0 37 GTCCACGAGA ............................. TAAAAATATCAAATCCAGATGCTAAGCCAGAAGAAAT 3018397 29 100.0 36 CAGAAGAAAT ............................. TATAGAATAGCTTTGTCTACTGCAAGGCCAATAGAC 3018462 29 100.0 36 GCCAATAGAC ............................. GTATTCGTTCTCAAAATCATAATCAATATTCTGCGT 3018527 29 100.0 38 TATTCTGCGT ............................. TCTTTTTTATTTGACAGTTCTTAAAAAAGATGTTAAAC 3018594 29 100.0 36 GATGTTAAAC ............................. CGGTACCAAAGCCGTGACAGTGATACCGGCATGCCA 3018659 29 100.0 36 CGGCATGCCA ............................. TTTAGAAAATAAGATATATTCTTTAATGTCTAAGTT 3018724 29 100.0 36 TGTCTAAGTT ............................. CGGCCCAACTGAATGTAACCAGTCTGAACTCATCTA 3018789 29 100.0 37 AACTCATCTA ............................. CTTTGAGTCCTACAGATACGCTTGAAGTTACATATAT 3018855 29 100.0 36 TTACATATAT ............................. AAGGGATAACGGCTCAGGAGGCAGAGAATATTGACC 3018920 29 100.0 36 AATATTGACC ............................. ACTTCATATTCGTCCGCTGTAGGATGTGCCATGTGG 3018985 29 100.0 38 TGCCATGTGG ............................. GGGGAGTCGAACCCCTCGCCTGTTCTGTTTGGTAACGT 3019052 29 100.0 36 TTGGTAACGT ............................. CTTAAATTGTTGTCATAGATGTACTTCCAAATGTCA 3019117 29 100.0 36 CCAAATGTCA ............................. TCATATTTTATAAACGCAGTAAAAAAAGCCTGCACA 3019182 29 100.0 36 AGCCTGCACA ............................. TCAATTTAAAGTTAAATTTTCCGCAGTTTAATTTTT 3019247 29 100.0 37 TTTAATTTTT ............................. GACAACCCTAAACAAATGGAAAGTGATGCCCAAGAAT 3019313 29 100.0 38 GCCCAAGAAT ............................. TCAAAGTTAGAAGATGAAAACATCGAAAGATTTAAAGT 3019380 29 100.0 36 GATTTAAAGT ............................. CGTTATATGTATGCAAGACAACGATAAAGGTTATCT 3019445 29 100.0 36 AAGGTTATCT ............................. TTGTGCCGACTCTATTGGGAGCAGTGCAAAAGCTAA 3019510 29 100.0 40 CAAAAGCTAA ............................. AGTGACATTATGCCGCTCGGAACTGGAATAGTTCTTTTAC 3019579 29 100.0 36 GTTCTTTTAC ............................. TTGATGTCAGGTTTATACTGCAGAACGGAGAAATTC 3019644 29 100.0 36 GGAGAAATTC ............................. GAAAATGGAAGAAGCAAAAGTAATTCAAGCATTACA 3019709 29 100.0 38 AAGCATTACA ............................. TGGGTAAAAGCTTGGGATGGAATAAAAAATATATTTTT 3019776 29 100.0 38 ATATATTTTT ............................. GGAGTAGCATGGAATAATGGATATAGAATTTCTTCGAC 3019843 29 100.0 39 TTTCTTCGAC ............................. CTGAAACGGTCCAGTTTATGCACAATCACAGCACCAAAC 3019911 29 100.0 36 AGCACCAAAC ............................. TTTAAACTGCTTGCACAAAAGGCATAAGTGTTTATT 3019976 29 100.0 AGTGTTTATT ............................. GAGCCACCAG ========== ====== ====== ====== ========== ============================= 53 29 36 ATTTACATCCCACATAGTTAAAGAACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.97%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [91,1032] Score: 0.18/0.18 # # Final direction: F [0.27,0.18 Confidence: LOW] >NC_016627 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 3020040 32 90.6 40 CACCATCAAG --.............................A GGCAAGTCTAGGAAAACCTCTGAAGCGTTGACGCCCTTTC 3020112 32 100.0 32 ACGCCCTTTC ................................ TAGACGATATTGATATTTATACAGGTCCTGGT 3020176 32 100.0 AGGTCCTGGT ................................ CCATTTTCAAC ========== ====== ====== ====== ========== ================================ 3 32 36 CCATTTACATCCCACATAGTTAAAGAACAACC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.50%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [3560,829] Score: 0.18/0.18 # # Final direction: R [0.18,0.68 Confidence: MEDIUM] >NC_016630 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 41422 32 100.0 35 NNNNNNNNNN ................................ ATAACCTCACCGAATCCATCAATCAAAGAGGATTG 41489 32 100.0 35 NNNNNNNNNN ................................ GTTTGAATCTGCTATGAAAAGCCTAACTGATTGCA 41556 32 100.0 35 NNNNNNNNNN ................................ TTTTTTACATTTTTTACATTTTACATATACTTTTT 41623 32 100.0 38 NNNNNNNNNN ................................ CACCAATGCAACTCCTCGATGTTTAAGTCTATCCCGTA 41693 32 100.0 36 NNNNNNNNNN ................................ AAATAAAATTGATACTCTAAAATCGCTTGAGATTGG 41761 32 100.0 36 NNNNNNNNNN ................................ TTGAGACGATTGAAAACCTAAACGGACAGCCTGCAT 41829 32 100.0 35 NNNNNNNNNN ................................ GTTTTCTGTTCCAGTAATCTTATATCCAAATTTCC 41896 32 100.0 36 NNNNNNNNNN ................................ CAGATCAATCAGCTATTTTGACAAAATAGTATATGG 41964 32 100.0 34 NNNNNNNNNN ................................ TTTTATTGCACCTCTCTTCCAGTGTATCAAGTCT 42030 32 100.0 36 NNNNNNNNNN ................................ CAATTTATGAATTCTATCGGGATTCGGAAAATCAAA 42098 32 100.0 33 NNNNNNNNNN ................................ CGGTAATATTCAAAGAAACACCCTGAAATGTAT 42163 32 100.0 33 NNNNNNNNNN ................................ TTTATATCTATCCTGATCGTCTACTCTCGAGTG 42228 32 100.0 37 NNNNNNNNNN ................................ GTTCATAAATCACCTCTTAATATAAAATATGAGCAAC 42297 32 100.0 35 NNNNNNNNNN ................................ CTGTTAAAACAATTGATTCTTCAATATTTCCATCG 42364 32 100.0 36 NNNNNNNNNN ................................ AATAACATTGTCTTCGATATCCGCCAACGTAATATC 42432 32 100.0 36 NNNNNNNNNN ................................ CAAATTGACCGTATCATTGCGGGATTTGGTGGAATT 42500 32 100.0 33 NNNNNNNNNN ................................ TACCATAGAGTTCGGATACTGTGAGAGTGAGAG 42565 32 100.0 39 NNNNNNNNNN ................................ TTTTAGCGGATAACATATTGACTTCTTCATACATCTGCC 42636 32 100.0 32 NNNNNNNNNN ................................ TTACAATCATACTTGCGTTATCAGGCATATAC 42700 32 100.0 34 NNNNNNNNNN ................................ TTAATCATCGCTAAATTCCATAACTCTACTGTAG 42766 32 100.0 36 NNNNNNNNNN ................................ CATACACCAAAAAGGTTTTGCCGTCTAAAATATATA 42834 32 100.0 34 NNNNNNNNNN ................................ CGGAGTACTGTCCTGCTTTACCTGCTTGGCCTAA 42900 32 100.0 43 NNNNNNNNNN ................................ GCTTATCAACAATCAAGAGGTGGACGAAGAGGTGGCGGTGGAC 42975 32 100.0 35 NNNNNNNNNN ................................ AAATCCTCTCCGTTTCCCAGCAACTGAAAAAGCTT 43042 32 100.0 38 NNNNNNNNNN ................................ TTTGCCTCTGCTAAAGTTACTGGCATAATAAATCATCC 43112 32 100.0 35 NNNNNNNNNN ................................ GTTGCGTCTTGCAAGTTCGTTGATAGCTTCCTCGT 43179 32 100.0 37 NNNNNNNNNN ................................ ACTTATTGCTGTTTTATCCATTGTGTCTGATTTTTGA 43248 32 100.0 36 NNNNNNNNNN ................................ TGTTGATATGTCAGATGTCGGAAGTAATACAACAAA 43316 32 100.0 38 NNNNNNNNNN ................................ AGCAAATTCTTAGCCGGAACGTATATTAATATGGCAAC 43386 32 100.0 38 NNNNNNNNNN ................................ GCAATACACCCATGAAAGTTTTGTTGCCGGAACGGTAT 43456 32 100.0 33 NNNNNNNNNN ...........T............G....... TTTTTTACAAAACGTATTAAATCTATCACTTTC 43521 32 100.0 35 NNNNNNNNNN ...........T............G....... ATTTGTTTTTATGTCATTTGTAGTTTTAACATTAA 43588 32 100.0 34 NNNNNNNNNN ................................ CGTTCGTGCAACGGCTAAAGGGTTTGCGGTCGGT 43654 32 100.0 35 NNNNNNNNNN ................................ TTCTCTTACAATTTCCAGTTCAGATTTTGGAATTT 43721 32 100.0 36 NNNNNNNNNN ................................ TTATGAAAGATAGAAAAAGGGGTTTTGAAAAAATGT 43789 32 100.0 1 NNNNNNNNNN ...AT......T......A........TG..A NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 36 32 35 GTCGCGTCCCACAGGGGCGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [6,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.30,-5.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [168,178] Score: 0/0.18 # # Final direction: F [5.28,0 Confidence: HIGH] >NC_016630 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 472155 36 100.0 30 NNNNNNNNNN CA..ACAA.AAT.T.T.T...C.............. AAAATTTATGACGCATATGATTATTTTTAT 472221 36 100.0 30 NNNNNNNNNN .................................... AACAGCACAGGCGGAAGCGTTGAAGAGTTA 472287 36 100.0 30 NNNNNNNNNN .................................... CATCACTCAAATTCTTAGCTTTATGTTCAA 472353 36 100.0 31 NNNNNNNNNN .................................... GGTTATGTTTTTAGGCATCTACTTTTGATTG 472420 36 100.0 31 NNNNNNNNNN .................................... CCATTTTAGTAGGATTATCTTTTAAACTACA 472487 36 100.0 30 NNNNNNNNNN .................................... GGTGGATGTCGTTGCCTAAATTACCGAAAT 472553 36 100.0 30 NNNNNNNNNN .................................... AACCGCTAAATATTTTACGATTATACATCA 472619 36 100.0 30 NNNNNNNNNN .................................... AACCGCTAAATATTTTACGATTATACATCA 472685 36 100.0 30 NNNNNNNNNN .................................... TTCGTCTGTTCATCACATTTTAGAAAGCTT 472751 36 100.0 30 NNNNNNNNNN .................................... GAAAGATTAGAATATCTGACACAACATTTT 472817 36 100.0 30 NNNNNNNNNN .................................... ATTCCACAAGTCTGGCGGTGCAAAGGTGCA 472883 36 100.0 30 NNNNNNNNNN .................................... TGCGTTCCTGCTGCAATCCCTAATACGAAT 472949 36 100.0 30 NNNNNNNNNN .................................... ATGAAATAGGGGTATCGGTTCAAGAGCAAA 473015 36 100.0 30 NNNNNNNNNN .................................... TTGCCACAGGAGATTAGACCAAACCACAGA 473081 36 100.0 30 NNNNNNNNNN .................................... AACTACACCCGTATGATTAAAAGTAAAAGG 473147 36 100.0 30 NNNNNNNNNN .................................... ATTGGGAAAAGAATTAATAAACCAACCAAA 473213 36 100.0 30 NNNNNNNNNN .................................... ACATAATAAAAGACTTGCTTGAAATCGTGG 473279 36 100.0 30 NNNNNNNNNN .................................... TTACAATTCCATCTTTGTTAGAATCATATT 473345 36 100.0 30 NNNNNNNNNN .................................... AAAAGAAAGCTTGTCCGTCATAGCATTTGT 473411 36 100.0 30 NNNNNNNNNN .................................... AAAAGAAAGCTTGTCCGTCATAGCATTTGT 473477 36 100.0 30 NNNNNNNNNN .................................... TACTTGATGAGCCCACTCCAGCTGCATTGG 473543 36 100.0 30 NNNNNNNNNN .................................... AATATCGATTGACTTCCGCTTCTTACCAAT 473609 36 100.0 30 NNNNNNNNNN .................................... GACAAGGAGTTGCGTTAAATATTACTGGAA 473675 36 100.0 30 NNNNNNNNNN .................................... AAAAGAAAGCTTGTCCGTCATAGCATTTGT 473741 36 100.0 30 NNNNNNNNNN .................................... AAAAGAAAGCTTGTCCGTCATAGCATTTGT 473807 36 100.0 30 NNNNNNNNNN .................................... CATCATCCGCTCCGGCATAACCGCCGATTT 473873 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 27 36 30 GTTTGACTACCATATGAAATTACACTACTCTCAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [283,55] Score: 0.18/0.18 # # Final direction: R [0.18,0.41 Confidence: MEDIUM] >NC_016633 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 3520456 32 100.0 35 NNNNNNNNNN ................................ AATGACCATCACCCAATAGGAACAACACCAATGAC 3520523 32 100.0 36 NNNNNNNNNN ................................ CTTTACGGGCAATGTGCTTTGATCGATATGCACATA 3520591 32 100.0 35 NNNNNNNNNN ................................ CACGTCCAGTGCTTGGAGTGATTACAAAGGTACGT 3520658 32 100.0 34 NNNNNNNNNN ................................ CTCAGCCGTTATGACCGAAGATGTTTCACACGAA 3520724 32 100.0 33 NNNNNNNNNN ................................ AACCACCAAGCGTACCAATCATTAAAATAACTA 3520789 32 100.0 33 NNNNNNNNNN ................................ AACCACCAAGCGTACCAATCATTAAAATAACTA 3520854 32 100.0 35 NNNNNNNNNN ................................ CGCGCATTGCACCCGGTGAACTGGACAACGAAGAA 3520921 32 100.0 33 NNNNNNNNNN ................................ CACATATTCGTAAATGAGGCACTGCTCAGGACC 3520986 32 100.0 35 NNNNNNNNNN ................................ ACAACTACCAGGTGTAGCTATAACGCTCAAATACT 3521053 32 100.0 36 NNNNNNNNNN ................................ ATCGATTACGAGGGGTCTGTCACTCTCAAAAATGAA 3521121 32 100.0 36 NNNNNNNNNN ................................ CACCTTTTACCCTGTCGGTAACCGCACCAACTCCAA 3521189 32 100.0 34 NNNNNNNNNN ................................ CCGTTGATCAGATAGAAGAAATGTTTTCCCGCAA 3521255 32 100.0 34 NNNNNNNNNN ................................ ATCTCCACAGAATCGAAAGGTTGAGGTATCTCGT 3521321 32 100.0 35 NNNNNNNNNN ................................ CGCTCGGTGACATTGTGTTGCAGGGTGATGATATC 3521388 32 100.0 34 NNNNNNNNNN ................................ ACCATGTGGGCGCAGGATATCGCTTTTACGACTA 3521454 32 100.0 33 NNNNNNNNNN ................................ TGTGCTCTATTAAGGACAAGGAGTTAACAAATG 3521519 32 100.0 33 NNNNNNNNNN ................................ ATTAGAAACAATGAATCCGATAGCGGCGGCAGT 3521584 32 100.0 34 NNNNNNNNNN ................................ AACGGATTGAGCATATATCTGCATCCAATGAGTT 3521650 32 100.0 34 NNNNNNNNNN ................................ CAGTAGTCGTCAATGCTATCATAGTCATATGCGT 3521716 32 100.0 35 NNNNNNNNNN ................................ CCCGATTGGAACATATCTAAGTTGGCAGACGTTCC 3521783 32 100.0 36 NNNNNNNNNN ................................ GCATCAAGAGAGATAAAGACAGAGCACGACCGCCTG 3521851 32 100.0 34 NNNNNNNNNN ................................ TCGTACCAACCGGAAGTGTAGTGAGCGTCGTATG 3521917 32 100.0 33 NNNNNNNNNN ................................ CATCCATAATCAACAAGGTTTCCGAGATTCTAA 3521982 32 100.0 34 NNNNNNNNNN ................................ GATTTATCAGATGGATTGGAAATGCAGACTGATT 3522048 32 100.0 33 NNNNNNNNNN ................................ ATGGGCATCCTATGATGTCGGTGGTTTGATAGA 3522113 32 100.0 34 NNNNNNNNNN ................................ TAAAGTACCCACCGCCACCCCCGGCAACCTTGCT 3522179 32 100.0 34 NNNNNNNNNN ................................ CTGCTACTACAGCGGCTATTAGATATCAACATGC 3522245 32 100.0 36 NNNNNNNNNN ................................ ACACAATCCTATGTGATTAAGCTAAGCAATTTTGCA 3522313 32 100.0 33 NNNNNNNNNN ................................ CAAGTGTTGGGAATTTTTTAGCATTCAAGGTAT 3522378 32 100.0 35 NNNNNNNNNN ................................ TCCACACTATCACTCAACTGGAAGGTGAACCATGA 3522445 32 100.0 32 NNNNNNNNNN ................................ GCATTAATGAGCAAAGGGCTAGGCAAGAAATT 3522509 32 100.0 34 NNNNNNNNNN ................................ CAGCCGGATATCACCAGCGAAGCAGAGACTGTTG 3522575 32 100.0 36 NNNNNNNNNN ................................ ATATACACCGCAAAAATTAAATGGGATTATTTTTGT 3522643 32 100.0 33 NNNNNNNNNN ................................ TAGCTATGTAAGATAAGTGGTATAGTGCGAAGC 3522708 32 100.0 37 NNNNNNNNNN ................................ AATGGGTACCATGCCACCAAGCCTTGCGAGACGTGAT 3522777 32 100.0 34 NNNNNNNNNN ................................ AAACTGGTGGATCGGATAGGCGCTGGGCTGAATA 3522843 32 100.0 33 NNNNNNNNNN ................................ CCTGTATCCTTGGTGTTTACAGACCAGATGAAA 3522908 32 100.0 33 NNNNNNNNNN ................................ TTGTTATTAACAGGCATATCATACCCTCCGTTG 3522973 32 100.0 35 NNNNNNNNNN ................................ AAACAAGTTGTGGATGAGATACCAGGAGTAGATAC 3523040 32 100.0 35 NNNNNNNNNN ................................ GGTAGCAACCCCAGAAATGAAGCTACTCTACGATA 3523107 32 100.0 35 NNNNNNNNNN ......................A......... CCCACATTGATATTTCGGGGGTTTGCGAGTGGAAA 3523174 32 100.0 34 NNNNNNNNNN ................................ CAGTCGAACAAGATACCGGCGTTGGAACTTGAAC 3523240 32 100.0 34 NNNNNNNNNN ..T............................. CCATTGTAGCAACGCAATCATCCCCGACACGCAT 3523306 32 100.0 32 NNNNNNNNNN ..............A................. CTGTACAGCCGGAGACAGCTGTTCCTGCTCAC 3523370 32 100.0 33 NNNNNNNNNN ................................ TTGCTCAGACTTGAGAGCATCTTGTAACTTCTG 3523435 32 100.0 32 NNNNNNNNNN ................................ CGATGGCTATGACGGTAGAAGAAGAGTTGTAT 3523499 32 100.0 33 NNNNNNNNNN ................................ CCACTTGACACTCGATTGTGCGCACTATATAGG 3523564 32 100.0 36 NNNNNNNNNN ................................ AAGAACCAGATCGAAGCAGCAAAGGTTTTGGTCAAC 3523632 32 100.0 1 NNNNNNNNNN .....................G.GTGG.TGCG NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 49 32 34 GTCGCACCCTTCACGGGTGCGTGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [7,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.60,-5.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [198,131] Score: 0/0.18 # # Final direction: F [5.55,0 Confidence: HIGH] >NC_016640 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 1748732 20 100.0 124 NNNNNNNNNN .................... AGACGGTGAAACTCCTGTAGACGGTGAAACTCCTGTAGACGGTGAAACTCCTGTAGACGGTGAAACTCCCGTAGACGGTGAAACTCCTGTAGACGGTGAAACTCCCGTAGACGGTGAAACTCCC 1748876 20 100.0 124 NNNNNNNNNN .................... TGATGAGGATGAACCCGTAGACGGTGAAACTCCTGTAGACGGTGAAACTCCTGTTGATGGTGAAACTCCTGTTGATGGTGAAACTCCTGTTGATGGTGAAACTCCTGTTGATGAGGATGAACCC 1749020 20 100.0 106 NNNNNNNNNN .................... AGACGGTGAAACTCCTGTAGACGGTGAAACTCCTGTAGACGGTGAAACTCCTGTTGATGGTGAAACTCCCGTAGACGGTGAAACTCCTGTTGATGAGGATGAACCC 1749146 20 100.0 88 NNNNNNNNNN .................... AGACGGTGAAACTCCTGTAGACGGTGAAACTCCTGTAGACGGTGAAACTCCTGTAGACGGTGAAACTCCTGTTGATGGTGAAACTCCC 1749254 20 100.0 70 NNNNNNNNNN .................... TGATGAGGATGAACCCGTAGACGGTGAAACTCCTGTAGACGGTGAAACTCCTGTAGACGGTGAAACTCCT 1749344 20 100.0 52 NNNNNNNNNN .................... AGACGGTGAAACTCCTGTAGACGGTGAAACTCCTGTTGATGGTGAAACTCCC 1749416 20 100.0 34 NNNNNNNNNN .................... TGATGAGGATGAACCCGTAGACGGTGAAACTCCT 1749470 20 100.0 34 NNNNNNNNNN .................... TGATGGTGAAACTCCTGTTGATGAGGATGAACCC 1749524 20 100.0 34 NNNNNNNNNN .................... AGACGGTGAAACTCCTGTTGATGGTGAAACTCCT 1749578 20 100.0 34 NNNNNNNNNN ..T..T.............. TGATGGTGAAACTCCTGTTGATGAGGATGAACCC 1749632 20 100.0 34 NNNNNNNNNN .................... AGACGGTGAAACTCCTGTAGACGGTGAAACTCCT 1749686 20 100.0 52 NNNNNNNNNN .................... AGACGGTGAAACTCCTGTAGACGGTGAAACTCCTGTAGACGGTGAAACTCCC 1749758 20 100.0 34 NNNNNNNNNN .................... AGACGGTGAAACTCCTGTAGACGGTGAAACTCCT 1749812 20 100.0 52 NNNNNNNNNN .................... TGATGGTGAAACTCCCGTAGACGGTGAAACTCCTGTTGATGAGGATGAACCC 1749884 20 100.0 52 NNNNNNNNNN .................... AGACGGTGAAACTCCTGTTGATGGTGAAACTCCTGTTGATGAGGATGAACCC 1749956 20 100.0 34 NNNNNNNNNN .................... AGACGGTGAAACTCCTGTTGATGGTGAAACTCCT 1750010 20 100.0 34 NNNNNNNNNN ..T..T.............. TGATGGTGAAACTCCTGTTGATGAGGATGAACCC 1750064 20 100.0 34 NNNNNNNNNN .................... AGACGGTGAAACTCCTGTAGACGGTGAAACTCCT 1750118 20 100.0 52 NNNNNNNNNN .................... AGACGGTGAAACTCCTGTAGACGGTGAAACTCCTGTAGACGGTGAAACTCCC 1750190 20 100.0 34 NNNNNNNNNN .................... AGACGGTGAAACTCCTGTAGACGGTGAAACTCCT 1750244 20 100.0 52 NNNNNNNNNN .................... TGATGGTGAAACTCCCGTAGACGGTGAAACTCCTGTTGATGAGGATGAACCC 1750316 20 100.0 52 NNNNNNNNNN .................... AGACGGTGAAACTCCTGTTGATGGTGAAACTCCTGTTGATGAGGATGAACCC 1750388 20 100.0 34 NNNNNNNNNN .................... AGACGGTGAAACTCCTGTTGATGGTGAAACTCCT 1750442 20 100.0 34 NNNNNNNNNN ..T..T.............. TGATGGTGAAACTCCTGTTGATGAGGATGAACCC 1750496 20 100.0 52 NNNNNNNNNN .................... AGACGGTGAAACTCCTGTAGACGGTGAAACTCCTGTTGATGGTGAAACTCCC 1750568 20 100.0 52 NNNNNNNNNN .................... TGATGAGGATGAACCCGTAGACGGTGAAACTCCTGTTGATGAGGATGAACCC 1750640 20 100.0 70 NNNNNNNNNN .................... AGACGGTGAAACTCCCGTAGACGGTGAAACTCCTGTAGACGGTGAAACTCCCGTAGACGGTGAAACTCCC 1750730 20 100.0 34 NNNNNNNNNN .................... TGATGAGGATGAACCCGTAGACGGTGAAACTCCT 1750784 20 100.0 70 NNNNNNNNNN .................... TGATGGTGAAACTCCTGTTGATGGTGAAACTCCTGTTGATGGTGAAACTCCTGTTGATGAGGATGAACCC 1750874 20 100.0 52 NNNNNNNNNN .................... AGACGGTGAAACTCCTGTAGACGGTGAAACTCCTGTTGATGGTGAAACTCCC 1750946 20 100.0 52 NNNNNNNNNN .................... TGATGAGGATGAACCCGTAGACGGTGAAACTCCTGTTGATGAGGATGAACCC 1751018 20 100.0 70 NNNNNNNNNN .................... AGACGGTGAAACTCCTGTTGATGGTGAAACTCCTGTTGATGGTGAAACTCCTGTTGATGAGGATGAACCC 1751108 20 100.0 1 NNNNNNNNNN .................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================== 33 20 54 GTAGACGGTGAAACTCCTGT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [5,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [50.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [3461,1103] Score: 0.18/0.18 # # Final direction: R [0.18,0.27 Confidence: LOW] >NC_016640 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================================== ====== 2549389 51 98.0 16 TGTAGGGGCG .................................................T. TCTCTCTGTTTCGGCG 2549456 51 100.0 16 TGTTTCGGCG ................................................... CCTCTCTGTTTCGGCA 2549523 51 100.0 TGTTTCGGCA ................................................... CCTCTCTGTTTCGGCAGGTTCTGCTAGTTCCTCGCCTGGGGGCGAT ========== ====== ====== ====== ========== =================================================== 3 51 16 GGTTCTGCTGTTAATTAATCGGACCACCAGAAGATTAATAAACCCGCCCGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.94%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.50,-6.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [53.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [60,537] Score: 0.18/0.18 # # Final direction: R [0.27,0.96 Confidence: MEDIUM] >NC_016640 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 2897528 35 97.1 40 CAGTCAACTC ....T.............................. GCTTATGTACAAGCATCGGCTAATTATAGTCCGTGCTTTG 2897603 35 100.0 37 CCGTGCTTTG ................................... CCATTGTCGATTCCGACAAAAAACCTTGTTCTTATGA 2897675 35 100.0 35 GTTCTTATGA ................................... TAGAAAAGGTCGGCGATCCGACCAAAAAATACTGC 2897745 35 97.1 37 AAAATACTGC ..................G................ GCTGGTCAATCGTCTGTCAATACCAGCGGTAATGTTG 2897817 35 100.0 41 GGTAATGTTG ................................... CTTGAACAATTACTGCTTGTTCAGAAGCGCAAATCATACCA 2897893 35 100.0 AATCATACCA ................................... AGTGCCGAGTT ========== ====== ====== ====== ========== =================================== 6 35 38 GTTTCCATACGTTTAACTTTCAAAGAAGTTTAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:71.43%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.10,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [73.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [185,204] Score: 0/0.18 # # Final direction: F [0.64,0.41 Confidence: LOW] >NC_016640 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 2903162 35 91.4 39 TTGGTGGGGG --.......T......................... ATGCGGGGAAGTGGGTCATGCCCCGCAAAAGTTTACGAG 2903236 35 100.0 43 AGTTTACGAG ................................... ACTGATAGCCAACTTGCGGAACTTTGTTTTAACAACATTGATC 2903314 35 100.0 35 AACATTGATC ................................... GATGACATCATCGTCGCATCGCTTGGAAATGACCC 2903384 35 100.0 42 GAAATGACCC ................................... TGGGAAGCTACAATAGTTATCTCTCTGCGAAAGATGCTTTTA 2903461 35 100.0 34 GATGCTTTTA ................................... TAACCGTATGGGCTAAGGCTAATTATAGCCCATG 2903530 35 100.0 38 ATAGCCCATG ................................... AGCGGGGTCTGCCCCGCTAAAATTTACGAAATAAATAG 2903603 35 100.0 41 AAATAAATAG ................................... TTTTCTCTCCTGTGGAGATGGCATCGGCTAACTATAGTCCG 2903679 35 100.0 37 CTATAGTCCG ................................... ATTCTCCACCTTCCGCCTGGACCAGCGATAAAGGTTG 2903751 35 100.0 39 ATAAAGGTTG ................................... AACTTTACAGTATCTAAACAGATGCTAGAAAATACCGTA 2903825 35 100.0 41 AAATACCGTA ................................... TAGTACTGGTAACTACTGCCATAGCGATCCAAACTACTGGC 2903901 35 100.0 38 AACTACTGGC ................................... CAGAGCAAGGGCAGAAACCAGTGCCCAAGGAATGGACA 2903974 35 100.0 38 GGAATGGACA ................................... TCTTGCCTGGCGGAAACCCAGGAGTAACCATCATTGAT 2904047 35 100.0 CATCATTGAT ................................... AGTGCCGGGT ========== ====== ====== ====== ========== =================================== 13 35 38 GTTTCCATACGTTTAACTTTCAGAGAAGTCTAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.71%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.60,-1.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [55.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [189,256] Score: 0/0.18 # # Final direction: F [0.64,0.41 Confidence: LOW] >NC_016640 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3587398 37 100.0 38 NNNNNNNNNN C.....C.......TT................AT... TTTGGAAAATCACAAAATGCGATCGGCATTCCCTAGCC 3587473 37 100.0 45 NNNNNNNNNN ...............T.CTT................. TCCCCTAACGACCTGAGACGTACCCTGGTCATCAAATAATATTAT 3587555 37 100.0 42 NNNNNNNNNN ..................................... CCCGTAGGAGGCGGAACATACTGGGTTCAGGATTTAGAAAAT 3587634 37 100.0 41 NNNNNNNNNN ..................................... TTTTATTGTTGTAATTTGAGGAAAATAAAATGGGCTTCAAA 3587712 37 100.0 36 NNNNNNNNNN ..................................... TGAAAATGGCATAAACCTCCTTTAATCTATATAAAA 3587785 37 100.0 44 NNNNNNNNNN ..................................... ACAGTATAGTAAGCTTTTTAAAAGAAAAATTAGAATTAACAGTA 3587866 37 100.0 40 NNNNNNNNNN ..................................... TAGGTCTGTCGTGGCAAATCTACGCCCCTCGGGGTATGTG 3587943 37 100.0 42 NNNNNNNNNN ..................................... ACCAAACCAAAGCAAAAACGCAAGCCCCAAAAAAAGCGAAAC 3588022 37 100.0 40 NNNNNNNNNN ..................................... ATATTTTCCAACCAAGAGAGAGCGGCCTCTCTATTTTGGA 3588099 37 100.0 35 NNNNNNNNNN ..................................... TGGTTCCCTGTGATGCAGCCACAACACGCTTTTTA 3588171 37 100.0 41 NNNNNNNNNN ..................................... TGGGTGGGGTGGGAGTATGTAGAAGACAAACGGAAGATAGA 3588249 37 100.0 46 NNNNNNNNNN ..................................... CGCCGGGTAAAATCGATGGGCTCTTCGGTGCTAAGACGTTACGCGC 3588332 37 100.0 41 NNNNNNNNNN ..................................... CCTGGCAAACGCCAGAAGCGTTTCAGCATCATTTTCGGGAA 3588410 37 100.0 44 NNNNNNNNNN ..................................... TTGATAGGCAGAGTGTTTGATGGGCATTTAGATACCGATGTCGA 3588491 37 100.0 48 NNNNNNNNNN ..................................... CCTAAGTTTGTGTGCCGCATAAAGGACAGTAACAGTAAAAGATTTAAT 3588576 37 100.0 44 NNNNNNNNNN ..................................... CCTTCCAATTTTAAGAGGAAGGGTAGTCGGATTTTCAAAGGAGG 3588657 37 100.0 39 NNNNNNNNNN ..................................... AGGCCCCCTTCTACAAGTGGCAGGAGAAGCAATTCTCGT 3588733 37 100.0 45 NNNNNNNNNN ..................................... TAGGGGGCCAGCCGCCCCCTTGCGTAAGTCTTCGATGACTTCCGG 3588815 37 100.0 42 NNNNNNNNNN ..................................... TTCTTCTTCATAATTTTTACTATTCTCTATGTTATATTTATT 3588894 37 100.0 44 NNNNNNNNNN ..................................... AAGAAAAACTGCTAGGGAACTAAGGAGCTAAAAATAAAATAAAA 3588975 37 100.0 45 NNNNNNNNNN ..................................... GGGGGCAATCGAAAGAGGAAAAGCATCAGTTGCATTCCTATCCGA 3589057 37 100.0 39 NNNNNNNNNN ..................................... GATCCACGAAGGAGACTCCGACGGAGACGGAGATGAATT 3589133 37 100.0 43 NNNNNNNNNN ..................................... TCCAGATAATGGAGCAGTTCAACCAGGCAGAATGTATATACTT 3589213 37 100.0 44 NNNNNNNNNN ..................................... GCTGGTGACATGGATGAAGTACAAAGACTTCTGGGTAGTGATGA 3589294 37 100.0 43 NNNNNNNNNN ..................................... AACGCGATCAAGGAAATACCCGAAATTGAAATGGTGATTCGTG 3589374 37 100.0 41 NNNNNNNNNN ..................................... AACAGAAAATTTCATTTTAGCAACAGGCAAAAAAGTCACAC 3589452 37 100.0 36 NNNNNNNNNN ..................................... TTTTTGCACCACACACGATTATCGGTTGTTCCAGAC 3589525 37 100.0 40 NNNNNNNNNN ..................................... CAAAATATAGAAATGGCTATCGAGTCAGCACTAAGGGGAA 3589602 37 100.0 39 NNNNNNNNNN ..................................... CCTGAAGCCGAACACGGCACGCGGGAAAAAAAACGTGCA 3589678 37 100.0 47 NNNNNNNNNN ..................................... TTATTTATTTATTTATTTATTTATTTATTTATTTATTTGACAGGATT 3589762 37 100.0 1 NNNNNNNNNN ..................................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 31 37 41 GTTTCCGTCCCCTTGCGGGGAATTGGTAGGGTTGGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,11] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.70,-9.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [99,333] Score: 0.18/0.18 # # Final direction: R [0,1.33 Confidence: HIGH] >NC_016640 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 4222943 37 100.0 39 NNNNNNNNNN C............G...CTT................. ACAGTAACACAACCAACCCAGTGGAATCGCTCGGATTTC 4223019 37 100.0 41 NNNNNNNNNN .............G...CTT................. CTGGGAGAATATGGCGCTTACCAGTGGGGAGTCTTCCCCCT 4223097 37 100.0 39 NNNNNNNNNN .............G...CTT................. TTCAAATCCAAAAAAGCACTCTAAGACGACATTCGATAA 4223173 37 100.0 43 NNNNNNNNNN .............G...CTT................. CTCAGCGGGTATCACAGGAAAAGGGCACTAGAGAATTGCGATC 4223253 37 100.0 39 NNNNNNNNNN .............G...CTT................. CGAGGAAGCGCTAACAGACTGTGATGTAGTCTGGTTAAA 4223329 37 100.0 42 NNNNNNNNNN ..................................... GGCTTTTCTCTGCAGGACAAGAGGGTAATATGCCCCAGGTTC 4223408 37 100.0 45 NNNNNNNNNN ..................................... TCCGTTGGCTGTAAAGAATAACGGTCAAATCGGAAGGTGGATTAT 4223490 37 100.0 41 NNNNNNNNNN ..................................... TAAATAATAAAAAGGTAACCGGGTACTTTAAAATATGGACT 4223568 37 100.0 42 NNNNNNNNNN ..................................... CGCCACTAGACAAGAGATAAAAGAAGCGGAATCAAAAGCATA 4223647 37 100.0 36 NNNNNNNNNN ..................................... AAACTCGGTAAGGGGAGGGCTTCTCCCCGGTCAGAA 4223720 37 100.0 44 NNNNNNNNNN ..................................... ATAAAAGGAAATAATTTACAAATACCTTCTATGAGGTCATTTAA 4223801 37 100.0 39 NNNNNNNNNN ..................................... AAGATTATTTTGATAATCTCAGAACTGCTATTGTTCGAA 4223877 37 100.0 41 NNNNNNNNNN ..................................... CTTGTTCTTGTTTTGGTTCTTGTTCTTTAAAAATATTATAA 4223955 37 100.0 41 NNNNNNNNNN ..................................... TGGGAAGCGGATACACCTATTTGGTGTAACACCCTGAATTA 4224033 37 100.0 43 NNNNNNNNNN ..................................... TCTGCTGAGGATTTCCAGATGAATGAACACCAAAGACAGCTAA 4224113 37 100.0 41 NNNNNNNNNN ..................................... CACCCAGAAGGGGGAGTATTTATCCATACAAATCATGTCTG 4224191 37 100.0 43 NNNNNNNNNN ..................................... AAAAAGTAAAAAGGGAGGATTGTAGTAAAACGACAATGCCCAT 4224271 37 100.0 40 NNNNNNNNNN ..................................... TTCAGGACTACCTTCGAACTGGTAGTATACCTACGGGCCG 4224348 37 100.0 48 NNNNNNNNNN ..................................... ACTTATGTGGACATAAGTGCCAACGGAGAAACAGTAGAAAATTCACAA 4224433 37 100.0 43 NNNNNNNNNN ..................................... AATAGCAAAGTCAGCGGTGAATGCGGTTCCAGTACCTACGACT 4224513 37 100.0 41 NNNNNNNNNN ..................................... TGAACTGAATCAACGAGCAGATGCTATCCTGCAAGACGAAC 4224591 37 100.0 45 NNNNNNNNNN ..................................... CAGATCTGCTTCTCTAGTGACAACCGTAGAAGGAAAACAAGTTAC 4224673 37 100.0 38 NNNNNNNNNN ..................................... AAACTCCTTATCCGTGGAGGTGGAGGTCCCGTTCATAG 4224748 37 100.0 48 NNNNNNNNNN ..................................... GAGGACGCTGATTATTATCTCGGAAACTAAGCAATAAACAAGATTAAG 4224833 37 100.0 47 NNNNNNNNNN ..................................... GTTGCAGGATTTCGATTCCGTAGTCGAAAAATGCGTTAACGCAGGAG 4224917 37 100.0 40 NNNNNNNNNN ..................................... TTATACTACAACTACACGGAACTACATAGAATAAAAGAGT 4224994 37 100.0 44 NNNNNNNNNN ..................................... TAGTTATCGCTTCTGTCGAGTTGCTAGAAAAGGAAGGTTTCAAA 4225075 37 100.0 46 NNNNNNNNNN ..................................... CGGGGTGATGAGTCTGCGGGATATCTACCCTATCCTCAAAGCCTGG 4225158 37 100.0 41 NNNNNNNNNN ..................................... ATTAAAACTAATATTTCTTTATTTTCCTTATTTGATTCTAA 4225236 37 100.0 44 NNNNNNNNNN ..................................... TTCAGAAAAGATATCAAGGTAAGGATTGCCTCGTGGGATGGGCG 4225317 37 100.0 44 NNNNNNNNNN ..................................... ATCTGGCGGTGTGAGCGCAGCATTGCGCTGCCACGAGCCCAACA 4225398 37 100.0 44 NNNNNNNNNN ..................................... TGTGGCAAATCAAATGTCTTGATTACGTGCTTTAATCGCGCGAA 4225479 37 100.0 39 NNNNNNNNNN ..................................... CTTCCGTCCAAATTACAGCTACTATGAAGCCCACCGGAC 4225555 37 100.0 1 NNNNNNNNNN ..................................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 34 37 42 GTTTCCGTCCCCTTGCGGGGAATTGGTAGGGTCTGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,11] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.70,-9.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [99,236] Score: 0.18/0.18 # # Final direction: R [0,1.33 Confidence: HIGH] >NC_016640 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 4296783 37 100.0 44 AAGGCATAGG ..................................... GCTTCGGGAAATTGTCGGGACTCCTTCTGGCCAGAGCGGAGTAG 4296864 37 100.0 42 AGCGGAGTAG ..................................... AAGATGATGCCTCTGTCCCCACTGAAGGGGAAGATAGGGGCC 4296943 37 100.0 44 GATAGGGGCC ..................................... GAACGAGGACTTCGCCATCCTCGTTCTCGCTGGTTGTTTCCGTG 4297024 37 100.0 37 TGTTTCCGTG ..................................... TTCCGTCTGGGGTAATCGCGACTGCTAATACCCCGCC 4297098 37 100.0 41 ATACCCCGCC ..................................... TCGATTTCAACTACCAAGCTACGAGGTGTTGCTAGTAAGTT 4297176 37 100.0 43 CTAGTAAGTT ..................................... CCGCGCTTCTCAGCGAGTTCCCTCATCTTTTCCTCTTTCGAGG 4297256 37 100.0 34 TCTTTCGAGG ..................................... CACAGCACGGGCTCAGTGCCGTTGTATAGGGCAA 4297327 37 100.0 40 TATAGGGCAA ..................................... TTTCGTGTTTAAGCGCCTTTATCACAGGGTGTTCTAAAGG 4297404 37 100.0 45 GTTCTAAAGG ..................................... TGAACTCTTTAAAGTCCCCCCATATACTGGAGAGTGTCCCCTCCG 4297486 37 100.0 45 GTCCCCTCCG ..................................... TTCATGGCACACATAGACAGCTTCGTCTTTAGGGACTACAAAAGG 4297568 37 100.0 43 CTACAAAAGG ..................................... AGGGATGGCATCCAAGCATACCCCTTTTGTATGTGCTGTGCCA 4297648 37 100.0 TGCTGTGCCA ..................................... TTTTCCTCGG ========== ====== ====== ====== ========== ===================================== 12 37 41 GTCAGACCCTACCAATTCCCCGCAAGGGGACGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [11,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-9.10,-8.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [48.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [377,3502] Score: 0.18/0.18 # # Final direction: F [0.74,0.45 Confidence: LOW] >NC_016640 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 4297860 37 100.0 41 AAAAAACAAT ..................................... TTTTCCTCGGATTATTCCGTTCTTCCCAACTGGAGACAAAA 4297938 37 100.0 45 GGAGACAAAA ..................................... AATCAGTGCTAATCTCGTCCGGGGGCTGAACCGACAAAATACCTT 4298020 37 100.0 44 AAAATACCTT ..................................... CTTTGAAGATATTTTTATAAAAAATCAAAAAAGGTTTATTAAGT 4298101 37 100.0 46 TTTATTAAGT ..................................... ACGGTCCCTGTCCCTGTGTTTGTTAATACCGCCCCACAGGGGTGCG 4298184 37 100.0 43 CAGGGGTGCG ..................................... TTTACCAATAGTATTCCTGTTCCTGTTCATGAAGGACCGAGCG 4298264 37 100.0 39 GGACCGAGCG ..................................... GTTTTTTCCCTAGCAATCAAACCCTTTAGCTTTGTTTGT 4298340 37 100.0 41 CTTTGTTTGT ..................................... CCTGGTTGTGTCACCAACCAAAAATTACTTTTGTCCTTATT 4298418 37 100.0 TGTCCTTATT ..................................... AAAAGCCGTG ========== ====== ====== ====== ========== ===================================== 8 37 42 GTCAGACCCTACCAATTCCCCGCAAGGGGACGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [11,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-9.10,-8.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [1454,2732] Score: 0/0.18 # # Final direction: F [1.01,0 Confidence: HIGH] >NC_016640 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 4298655 37 100.0 45 NNNNNNNNNN ..................................... TCGAACGCACCAAATTCGAGGTAGCTTTCCGCTCCGTCCCCTCCG 4298737 37 100.0 42 NNNNNNNNNN ..................................... AAGGATATTTTTTAGAAAAAATTGAACTAATTTATAAAGAAA 4298816 37 100.0 45 NNNNNNNNNN ..................................... CAAACCCAGCACAGTACGGGTTCTTGTGGGTCTTTTGCGTGAATA 4298898 37 100.0 40 NNNNNNNNNN ..................................... CTTACAAATCGGCAAATTCTTGTTTTTTGATTTTTTAGGT 4298975 37 100.0 43 NNNNNNNNNN ..................................... AAAGGAGCGGATATAGGCTCTCCGATATTTTCTTCCCCGTTTT 4299055 37 100.0 47 NNNNNNNNNN ..................................... TTAAATCATCCTTTGATATGATGTCCGATTCATCAAATATATATAGG 4299139 37 100.0 39 NNNNNNNNNN ..................................... TTGCTTACCCCGCGTTAGGACTACTGCTTGTATTAAGCT 4299215 37 100.0 42 NNNNNNNNNN ..................................... TGTCTTATAGAAACCAGGTTTCCATAATTCTGATGCTGGTAT 4299294 37 100.0 45 NNNNNNNNNN ..................................... TTGGATTGCCTTGCTAGTGTTTCTCCAGGCATTTCTGCTGTCAGC 4299376 37 100.0 38 NNNNNNNNNN ..................................... TGGAGGGGTTTTTTCGTTTCCCCGGAGGATTTTACCCA 4299451 37 100.0 42 NNNNNNNNNN ..................................... CCTGCTCCTTGGAGGATGATTTGGTCAGCTTGGAGGATTTCC 4299530 37 100.0 46 NNNNNNNNNN ..................................... TATCTGGAACAATAGCAGTTCTGAGATTATTAAAATAATCTTTATT 4299613 37 100.0 44 NNNNNNNNNN ..................................... TATGCATAAGAAACATACTCTTCCACTTTTATCGCCTCTTCACT 4299694 37 100.0 41 NNNNNNNNNN ..................................... TTGATTAACGGCATCGCGTTAACCTGTTTAACTTGAGAAGC 4299772 37 100.0 41 NNNNNNNNNN ..................................... AAACCTTGGTCCACCAACTTCGGTCGGCATCCTCTTTGTCT 4299850 37 100.0 39 NNNNNNNNNN ..................................... TTACCAATAGTATTCCTCCTGTTCCTGTTCCTGTTCCTG 4299926 37 100.0 49 NNNNNNNNNN ..................................... CCCTAACCACAGGTTTAGCTCGGGGTCTAGTTCGATGCAGGCGCAGCAA 4300012 37 100.0 43 NNNNNNNNNN ..................................... GATACGCAACCATCAGCGCTGCTTCTAATTGCTTATCATCCAA 4300092 37 100.0 39 NNNNNNNNNN ..................................... TGTTGCTCTTCCGGGGTAGGTCCCCGCGAGTTGAACTCA 4300168 37 100.0 45 NNNNNNNNNN ..................................... TTTTGGTTTTATTATCATTGTTGCTCCTTTTGCCATAAAGCTAAT 4300250 37 100.0 45 NNNNNNNNNN ..................................... ACGCTGTCAGCTCTTCCGGCGAGTTATCCCAAATCAACTCGTCCT 4300332 37 100.0 43 NNNNNNNNNN ..................................... ATTAGGTTGACGCAATGCGATTGAGTGTACCTTACAGAAGCCA 4300412 37 100.0 38 NNNNNNNNNN ..................................... CCACTTTCTGTACTACTTTAAGTACTTCTCTCAGGATA 4300487 37 100.0 43 NNNNNNNNNN ..................................... AACCCTTTTTCGGCGTTTTTGAATTGAGTAAAAAAATCAGGCT 4300567 37 100.0 35 NNNNNNNNNN ..................................... ATTAAATACTCCCCCATATCGGGGTCATAGATAAT 4300639 37 100.0 38 NNNNNNNNNN ..................................... GAAAACTCGCCAATTCTCATTGTTCGGGGGATTGAGCG 4300714 37 100.0 47 NNNNNNNNNN ..................................... CTGTCACAATGCTCCAGTGGAGGGCGGGCCTATCGATAGCATAAATA 4300798 37 100.0 38 NNNNNNNNNN ..................................... CAGGGAGCTATCTCTTCTTTCTCAATTTCAAGAATGAG 4300873 37 100.0 42 NNNNNNNNNN ...TA.........G..T..T.TC............. AACCCGGAACCACAAATAATATCTGTTCCGGGTTCTCCTACC 4300952 37 100.0 38 NNNNNNNNNN T..TA............AAG................. CAGGGAGCCATCTCTTCTTTCTCAATTTCAAGAATGAG 4301027 37 100.0 40 NNNNNNNNNN ...TA............AAG................. AGCTTTTGAAACTTAGCCTTAATAAAAAGAGAATCAGATA 4301104 37 100.0 1 NNNNNNNNNN .................AAG..........T...... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 32 37 42 GTCAGACCCTACCAATTCCCCGCAAGGGGACGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [11,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-9.10,-8.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [60.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2249,46] Score: 0.18/0.18 # # Final direction: F [1.6,0 Confidence: HIGH] >NC_016640 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 5189874 35 100.0 34 CAAAAAAGTA ................................... CATCATCTCGATGGCATGGGAGTGTTCTCAACTT 5189943 35 100.0 36 TTCTCAACTT ................................... CTGCCCAAGGCCTGCCGCCCCTTAAGTCCCTAAAAC 5190014 35 100.0 37 TCCCTAAAAC ................................... GTTACATCGTTACAGATGTCTACTTTGGCGGTCGCGA 5190086 35 100.0 32 GCGGTCGCGA ................................... CAGTATAAGGTTGCATATGCACATGTCAACCA 5190153 35 100.0 41 ATGTCAACCA ................................... AGGAAGGGTGGATCGTGGTATTGACATGTAAACGAGGTCAA 5190229 35 100.0 36 ACGAGGTCAA ................................... TGTTTCATGGTCTACAAGGTCTACAAGGGGGGGCGA 5190300 35 100.0 37 GGGGGGGCGA ................................... ATTGGTGTCCTGAGATATCATTGTGGTATCAAGACAA 5190372 35 100.0 35 ATCAAGACAA ................................... TGCTTCGTCCCCTTCGTCCTTGGGACTGGGAACTT 5190442 35 100.0 40 CTGGGAACTT ................................... CTTTGATGTCTTTATTCCCAACGGCTACGGCGGCTTCAAG 5190517 35 100.0 35 CGGCTTCAAG ................................... GAAGGAAGAGGCTTTGTCGTGGAAGGAAGCGACAA 5190587 35 100.0 34 GAAGCGACAA ................................... CAGTGAACGATGTAAGCATCATACGGTCCATATC 5190656 35 100.0 32 GGTCCATATC ................................... CGAAAGACAAAGTTTTTGTCCCCCACCTTCCA 5190723 35 100.0 35 CCACCTTCCA ................................... TACAAGGTCCTCCTCCACGGGGAACGACAAGTATT 5190793 35 100.0 34 GACAAGTATT ................................... CGGAGGAATGTTTGTTGTTCGGGCAGCAACCTTT 5190862 35 100.0 33 AGCAACCTTT ................................... GAATAGGTCTAGACGCATTCAAGTACCCATCTG 5190930 35 100.0 34 TACCCATCTG ................................... CAGTTCGCTCCTTAAAGTGCGAACTATTTGGGTT 5190999 35 100.0 32 TATTTGGGTT ................................... CAGGGGGGAAGCCAAGGTCTATCTCGGAAAAA 5191066 35 100.0 34 CTCGGAAAAA ................................... ACCAACAGCGGCTTCGTGCCGTTCGTAAACTTTC 5191135 35 100.0 37 GTAAACTTTC ................................... AAAGTTTCGGCAAAGGGGCTGACAAGCCCCTCCTTTT 5191207 35 100.0 35 CCCTCCTTTT ................................... AATCGTAGAAATCGTAACTTACAGGTCACTCCATT 5191277 35 100.0 37 TCACTCCATT ................................... TTCTTTGGGACGACGAGTGCAACTACTCCGAAGAAGA 5191349 35 100.0 35 CCGAAGAAGA ................................... GTAATTACTTTACATTAATTTCAAAGATTGATCAA 5191419 35 100.0 GATTGATCAA ................................... AGCATAAGAA ========== ====== ====== ====== ========== =================================== 23 35 35 GTTGCCATACGTTCGACTTTCAAAGAAGTCTCAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:57.14%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [97,441] Score: 0.18/0.18 # # Final direction: F [0.64,0.18 Confidence: MEDIUM] >NC_016640 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 5404943 19 100.0 106 NNNNNNNNNN .C...........C..G.. AACTTTCCAACTCTCCAACTCTCCAACTCTCCAACTTCCAACCTGTCAACTTCCCAACTCTCCAACTTCCTCACCTGTCAACTCCCCCACCTGTCACCTGTCAAGT 5405068 19 100.0 92 NNNNNNNNNN .C..............T.. CAACTCTCCAACTTTCCAACTCCCCCACCTCCCACCTGTCAACTCTCCAACTTCCCCCACCTGTCACCTGTCAACTTCCCAACTTTCCAACT 5405179 19 100.0 82 NNNNNNNNNN ...GG.............. GGACTTCCCACACCTGTCACCTGTCAACTCTCCAACTCTCCAACTTCCTCACCTGTCACCTGTCAACTTCCCAACTCTCCAA 5405280 19 100.0 84 NNNNNNNNNN ................... GGACTTCCCACACCTGTCACCTGTCAACTCTCCAACTCTCCAACTTCCTCACCTGTCACCTGTCAACTTCCCAACTTTCCAACT 5405383 19 100.0 60 NNNNNNNNNN ...GG.............. CAACTTCCCCCACCTGTCACCTGTCAACTTCCCAACTCTCCAACTTTCCAACTCCCCCAC 5405462 19 100.0 66 NNNNNNNNNN ................... GGACTTCCAACCTGTCAACTCTCGGACTTCCCCCACCTGTCACCTGTCAACTTTCCAACTTTCCAA 5405547 19 100.0 84 NNNNNNNNNN ................... GGACTTCCCCCACCTGTCACCTCCCACCTGTCAACTCTCGGACTTCCCCCACCTGTCACCTGTCAACTCTCGGACTTTCCAACT 5405650 19 100.0 58 NNNNNNNNNN .C................. GGACCTGTCAACTTCCCAACTCCCCCACCTGTCACCTGTCAACTCTCCAACTCTCCAA 5405727 19 100.0 60 NNNNNNNNNN ................... GGACCTGTCAACTTCCCAACTTCCTCACCTGTCACCTGTCAACTTTCCAACTTTCCAACT 5405806 19 100.0 43 NNNNNNNNNN .C................. GGACTTCCCCCACCTGTCACCTGTCACCTGTCACCCGTCAACT 5405868 19 100.0 67 NNNNNNNNNN .C...............C. CCACCTGTCACCTGTCAAGTCCCCCACCTGTCAACTTTCCAACTCTCCAACTTTCCAACTCCCCCAC 5405954 19 100.0 45 NNNNNNNNNN ................... CAACTTCCCCCACCTGTCACCTGTCAACTTTCCAACTTTCCAACT 5406018 19 100.0 45 NNNNNNNNNN .C................. GGACTTCCCCCACCTGTCACCTGTCAACTCTCCAACTCTCCAACT 5406082 19 100.0 67 NNNNNNNNNN TC.T.............C. CCACCTGTCACCTGTCAAGTCCCCCACCTGTCAACTTTCCAACTCTCCAACTTTCCAACTCCCCCAC 5406168 19 100.0 77 NNNNNNNNNN ................... CAACTTCCCCCACCTGTCACCTGTCAACTTCCCAACTTTCCAACTCTCGGACCTGTCAACTCTCGGACTTCCCACAC 5406264 19 100.0 50 NNNNNNNNNN ................... CAACTCTCCAACTTCCTCACCTGTCACCTGTCAACTTCCCAACTCTCCAA 5406333 19 100.0 52 NNNNNNNNNN ................... GGACTTCCCCCACCTGTCACCTCCCACCTGTCAACTCTCGGACTTCCCCCAC 5406404 19 100.0 60 NNNNNNNNNN ..GT............... GGACTTTCCAACTCCCCCACCTGTCAACTCTCGGACCTGTCAACTTCCCAACTCCCCCAC 5406483 19 100.0 73 NNNNNNNNNN ..GT............... CAACTCTCCAACTCCCACCTGTCAACTCTCGGACTTCCCCCACCTGTCACCTGTCACCTGTCACCCGTCAACT 5406575 19 100.0 67 NNNNNNNNNN TC.T.............C. CCACCTGTCACCTGTCAAGTCCCCCACCTGTCAACTTTCCAACTCTCCAACTTTCCAACTCCCCCAC 5406661 19 100.0 43 NNNNNNNNNN ................... CAACTTCCCCCACCTGTCACCTGTCAACTTTCCAACTTTCCAA 5406723 19 100.0 84 NNNNNNNNNN ................... GGACTTCCCCCACCTGTCACCTCCCACCTGTCAACTCTCGGACTTCCCCCACCTGTCACCTGTCAACTCTCGGACTTTCCAACT 5406826 19 100.0 58 NNNNNNNNNN .C................. GGACCTGTCAACTTCCCAACTCCCCCACCTGTCACCTGTCAACTCTCCAACTCTCCAA 5406903 19 100.0 60 NNNNNNNNNN ................... GGACCTGTCAACTTCCCAACTTCCTCACCTGTCACCTGTCAACTTTCCAACTTTCCAACT 5406982 19 100.0 43 NNNNNNNNNN .C................. GGACTTCCCCCACCTGTCACCTGTCACCTGTCACCCGTCAACT 5407044 19 100.0 20 NNNNNNNNNN .C...............C. CCACCTGTCACCTGTCAAGT 5407083 19 100.0 53 NNNNNNNNNN .C..............T.. CAACTCTCCAACTTTCCAACTCCCCCACCTCCCACCTGTCAACTCTCCAACTT 5407155 19 100.0 45 NNNNNNNNNN .C...........C..G.. AACTTCCCAACTTTCCAACTCTCGGACCTGTCAACTCTCGGACTT 5407219 19 100.0 28 NNNNNNNNNN .C...........C..G.. AACTTTCCAACTCTCCAACTTTCCAACT 5407266 19 100.0 36 NNNNNNNNNN .C.......CC..C..G.. AACTCTCGGACTTCCAACCTGTCAACTCTCGGACTT 5407321 19 100.0 20 NNNNNNNNNN .C...........C..G.. AACTTTCCAACTTTCCAACT 5407360 19 100.0 21 NNNNNNNNNN .C................. GGACCTGTCAACTTCCCAACT 5407400 19 100.0 45 NNNNNNNNNN TC.T.........C..G.. AACTTTCCAACTTTCCAACTCCCCCACCTGTCAACTCTCGGACTT 5407464 19 100.0 36 NNNNNNNNNN .C...........C..G.. AACTCTCCAACTCTCCAACTTCCTCACCTGTCAACT 5407519 19 100.0 44 NNNNNNNNNN .C...........C..G.. AAGTCCCCCACCTGTCAACTTTCCAACTCTCCAACTTTCCAACT 5407582 19 100.0 1 NNNNNNNNNN .C.......CC..C..G.. NNNNNNNNNN ========== ====== ====== ====== ========== =================== 36 19 56 CTCCCACCTGTCAACTCTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [13-24] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [155,6536] Score: 0.18/0.18 # # Final direction: R [0.41,0.55 Confidence: LOW] >NC_016641 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 1109702 31 100.0 36 GGCAAAAAAT ............................... CCACAGACACGACCACTCTATTGTATTGGGCTACCG 1109769 31 100.0 36 TGGGCTACCG ............................... CACTTACGTCAGCCCGAGCCGCGTAGTACGTCTTTA 1109836 31 100.0 38 TACGTCTTTA ............................... CGCTCTACCCATTCAATTAGCATGTTCGACACTCCTAA 1109905 31 100.0 36 ACACTCCTAA ............................... CCATCATAAATAGCGTTACCTAATGCATCCGATCCT 1109972 31 100.0 34 ATCCGATCCT ............................... CGCGGTAGATTTGGGATGGTTTTTGTACAGCTAC 1110037 31 100.0 35 GTACAGCTAC ............................... CAGCCGTTGATACATTAGGAATGTCCATGTGATAA 1110103 31 100.0 33 CATGTGATAA ............................... CTCTACAGAATTTCTGTTAGCTCAACCGGGAGA 1110167 31 96.8 AACCGGGAGA ..............................T GGATCGGCT ========== ====== ====== ====== ========== =============================== 8 31 35 ATTTCAATCCACGCACTCATATAGAGTGCGA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.06%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-1.70,-1.70] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [50.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [711,85] Score: 0.18/0.18 # # Final direction: R [0.59,4.77 Confidence: HIGH] >NC_016641 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1111468 32 100.0 35 TATCTCTTTA ................................ TGTACGCATTGCAATAAGCAGCATTACCCTGAAAC 1111535 32 100.0 37 ACCCTGAAAC ................................ AAGAGATATCAGAGCGCTGGTTGCCGCTGGGTGGTAT 1111604 32 100.0 33 TGGGTGGTAT ................................ TTTGATAGGGGACTTGATCAATACAAAATAGCT 1111669 32 100.0 35 CAAAATAGCT ................................ GAGTACCGGATTTATTCTACATCGTCGAGGGAAAT 1111736 32 100.0 36 CGAGGGAAAT ................................ TAACATACTCTTTAAAGAGGGCGCGGCCGGTGTTAA 1111804 32 100.0 37 CCGGTGTTAA ................................ AACATCATTCGTTTCTTCCAGCAGCCATTTAGCAAAA 1111873 32 100.0 TTTAGCAAAA ................................ AGCGAAAAAGG ========== ====== ====== ====== ========== ================================ 7 32 35 ATTTCAATCCACGCACTCATATAGAGTGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.25%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.60,-3.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [62,225] Score: 0.18/0.18 # # Final direction: R [0,5.32 Confidence: HIGH] >NC_016641 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1957607 32 100.0 34 TATCTTGGAA ................................ GTTAACCTTTTCAGATAGTTCAGGGTACATATCA 1957673 32 100.0 34 GTACATATCA ................................ AATGTAGCTTCAGCTGTCAGCACCCCACGCGTAA 1957739 32 100.0 31 CCACGCGTAA ................................ GCCGTGCGGATAGTCAGCCGAGAACCCAACG 1957802 32 100.0 36 GAACCCAACG ................................ CTTTAAGACGACTATTTATATTATTCAGTTCATCCT 1957870 32 100.0 37 AGTTCATCCT ................................ TGACGAGATCGTTGCGTACTTATCCGGAGAGTGGCCG 1957939 32 100.0 AGAGTGGCCG ................................ AGCGGAAATG ========== ====== ====== ====== ========== ================================ 6 32 34 ATTTCAATCCACGCACTCATATAGAGTGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.25%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.60,-3.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [369,288] Score: 0/0.18 # # Final direction: R [0,5.14 Confidence: HIGH] >NC_016641 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 2168973 32 100.0 37 NNNNNNNNNN ................................ TTGCTGGTAGGCATGGGCGTGGTTGTTGTTGGGCTGG 2169042 32 100.0 38 NNNNNNNNNN ................................ TGATTATCTGCAGGTGTTTAAATTTATCATGCGCGGGC 2169112 32 100.0 33 NNNNNNNNNN ................................ ATTCATAAAAATGAAGCCAAGGCTTTCTTTAAT 2169177 32 100.0 37 NNNNNNNNNN ................................ CTCCAATCTGTTTTATGTATGAACAATAAAAAAGCCA 2169246 32 100.0 33 NNNNNNNNNN ................................ AGGTCGCCATATACCCGCTGATACTGGATTCTC 2169311 32 100.0 39 NNNNNNNNNN ................................ ATCCGGTTTTTAAGCTGACTCTTGAAAAGTTGATAGACC 2169382 32 100.0 36 NNNNNNNNNN ................................ TCCCCTGTCGTTTCCGGACGCCAGTCCTCCTGGAGC 2169450 32 100.0 35 NNNNNNNNNN ................................ CAGAAAGTGAAATGGACAGAGTTATCAGAGAGGCC 2169517 32 100.0 36 NNNNNNNNNN ................................ ACTGACGGATCGAGCACAACGGAATTTGTAGGTAAG 2169585 32 100.0 34 NNNNNNNNNN ................................ CACATGTCGGGCAAATAGCTCCACCTTGATGGTA 2169651 32 100.0 37 NNNNNNNNNN ................................ ACACTGCTTATCACTCTGTTTTGGGATATTCCAGTTT 2169720 32 100.0 37 NNNNNNNNNN ................................ TTGACGTTTGCTTGCATCCGTCGTTATCTTCGTACCT 2169789 32 100.0 37 NNNNNNNNNN ................................ CACTATAGATGTGCCTATATCAACCCAACCAGAGTTG 2169858 32 100.0 36 NNNNNNNNNN ................................ CCAGTCATGCATTGTGCCACCACATCTTGGACAAGC 2169926 32 100.0 33 NNNNNNNNNN ................................ AAGATCAGCAATAATAGATTCCATAGACTCCAA 2169991 32 100.0 37 NNNNNNNNNN ................................ ACCGTGGGGGTTGTCTCAAACATAACCACCACGGTAG 2170060 32 100.0 35 NNNNNNNNNN ................................ CTTCCCCAGGAACTATATGACAAGCTTCCTTTGGA 2170127 32 100.0 37 NNNNNNNNNN ................................ ATGCTCTATCCCTCCATACCTTTATAGCCACGTACAC 2170196 32 100.0 33 NNNNNNNNNN ................................ TGTGCGCCCGGATCAAAACTTATCGCAGAATAA 2170261 32 100.0 36 NNNNNNNNNN ................................ CTATTTTGGAGTACCGATAAGCAACATTATTGAGCA 2170329 32 100.0 36 NNNNNNNNNN ................................ AGCCGTTGTTGTAAGTCATTAGTCTTTTGACGCTGC 2170397 32 100.0 38 NNNNNNNNNN ................................ TTCGATCAGGTCTATCTACCTCTGCTGGAGGAAGGTAA 2170467 32 100.0 33 NNNNNNNNNN ................................ TTTGAAGTAGAATCTTTGGATGCGACGACAAAA 2170532 32 100.0 36 NNNNNNNNNN ................................ AATACAGAATCAATCCCGTCGAACATTTCACGCAAC 2170600 32 100.0 1 NNNNNNNNNN ............G......T.G.C......T. NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 25 32 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.25%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.20,-2.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [68.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [411,523] Score: 0/0.18 # # Final direction: F [5.55,0 Confidence: HIGH] >NC_016641 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 3984629 32 100.0 34 CATTTTCGCT ................................ CAGCGAGACGACCAGTTTTAAGCAGCTAAATGAT 3984695 32 100.0 38 GCTAAATGAT ................................ ATTGATTTAGAACCCGCAGAGCCGGAGATTCCAGTAAC 3984765 32 100.0 34 TTCCAGTAAC ................................ GCCTTCCTACGCCAAATGACTGGAGGGATACACC 3984831 32 100.0 36 GGGATACACC ................................ AGATGAAGCGACCTCTACGGCCTTTTGAATACTCGT 3984899 32 100.0 33 GAATACTCGT ................................ AAAAATTCCGTCAAGATTGTAGCAGACCTCATA 3984964 32 100.0 AGACCTCATA ................................ ACATACCCATCAATACTCCTTGATGGATTCGAAGCACC ========== ====== ====== ====== ========== ================================ 6 32 35 GTCGCACTCTGTATGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.12%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.20,-2.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [307,215] Score: 0/0.18 # # Final direction: F [5.14,0 Confidence: HIGH] >NC_016645 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 2235098 25 100.0 41 AAAACCAGCC ......................... CTATTTGGAATTTGGGGGTTTATAAATGTTTCGCCCCTTAC 2235164 25 100.0 43 CGCCCCTTAC ......................... GCCCCGCGGAGGACCTCCGCGAGTCTCCTCAAGACGTGTCTGA 2235232 25 100.0 42 ACGTGTCTGA ......................... CTCCCCTTGGCGTTTTGTATCAGCTCCACGAGCCTCTTCACC 2235299 25 100.0 43 CCTCTTCACC ......................... CTAGCAACTTTGAACACGTCCATGAGCTTGGCCCACGCAACTG 2235367 25 100.0 44 CACGCAACTG ......................... TCCCACCCTTTCCCCCTTCTTCTCGTGGACTGCGTTAAGCTTCT 2235436 25 100.0 45 TTAAGCTTCT ......................... TGATGGTGGTGTAGCTCATATGAGCACCCACACCTCCCTCTGCCT 2235506 25 100.0 38 CCCTCTGCCT ......................... ACAAATGTCGGGGTCCGGGGGGGCCTGGGTTTGTCAAG 2235569 25 100.0 42 GTTTGTCAAG ......................... TCTGGGCATGTGCTCCCGTGGCTCCGCGGTTTAAAAATCCGA 2235636 25 100.0 44 AAAAATCCGA ......................... TACGTAGCCAGGGACCCGTCCTCAAGCTGATCTGTGAACGTGAT 2235705 25 100.0 45 TGAACGTGAT ......................... TGGATCGGTCTAGAGAACGGTAAAGCTGGCGGTAATATGCTCACA 2235775 25 100.0 44 TATGCTCACA ......................... GCGAGGCGGTTCGCAGGCGCGGCGCGGGCGGCGCACTGTGGGGA 2235844 25 92.0 ACTGTGGGGA ..A...............A...... TCTACTAATG ========== ====== ====== ====== ========== ========================= 12 25 42 CCGGAAATCAAAAGATAGTTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.00%AT] # Reference repeat match suggestion: F [matched GTGGAAATCAAAAGATAGTAGAAAC with 88% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [133,243] Score: 0/0.18 # # Final direction: F [0.91,0 Confidence: HIGH] >NC_016641 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================= ====== 3997659 33 100.0 33 ACTTAGTTAA ................................. ACATGTGGCATCCAAATCGTCTGCCAACTTTCG 3997725 33 100.0 35 CCAACTTTCG ................................. AGCCGAAGAGAACAGAGCGGTGAACGTTATTTGCC 3997793 33 100.0 36 GTTATTTGCC ................................. AGTCAAACTTGAGCTTAAATAAAAATAAGCCCCGGA 3997862 33 100.0 41 AAGCCCCGGA ................................. AGTCCAGACAATCTTCGAAAACAATATCAAGCTATTTTAAC 3997936 33 100.0 34 CTATTTTAAC ................................. AAATGGTGGTGGATATCCGTGGGCGTACCAAGTG 3998003 33 100.0 34 GTACCAAGTG ................................. TTTAATTACATATTAACCCAAGTACTATCGTTCG 3998070 33 100.0 34 CTATCGTTCG ................................. TGCAGTTCATAGCCCCAGGTAAAACGGATATGTT 3998137 33 100.0 36 CGGATATGTT ................................. GCTTCGGAATCGGTCAAACGCCAGTGTGGGCCAAGC 3998206 33 100.0 33 TGGGCCAAGC ................................. CGCCCATGCCGCTTTTACCTGTGTTATTGATGA 3998272 33 100.0 33 TTATTGATGA ................................. CGGTTCAAAGACCGGAGTACAGGACGTTATGGA 3998338 33 100.0 34 ACGTTATGGA ................................. TTCAAGGATTTTTTGAACTTGGCGGCGAACCTCG 3998405 33 100.0 GCGAACCTCG ................................. GGAAGTGAAT ========== ====== ====== ====== ========== ================================= 12 33 34 GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:51.52%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.60,-2.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [452,369] Score: 0/0.18 # # Final direction: F [5.14,0 Confidence: HIGH] >NC_016641 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 4001734 32 100.0 35 CATTTTCGCT ................................ AGCACGGAAATGTCAGGCAGCGCGTCCGGATGGGC 4001801 32 100.0 37 CCGGATGGGC ................................ AGTGTTTATAGTACCTATTATATGCAAATCTTCATTA 4001870 32 100.0 35 ATCTTCATTA ................................ TCCACCTTATCGTCCATTGGACCACCAGTTTCCTC 4001937 32 100.0 35 CAGTTTCCTC ................................ TCTCCATCCCATACAATGCACTGCCAACCATTCAT 4002004 32 100.0 37 AACCATTCAT ................................ TTATCCAACAGGAACAGCAACAGAAAGCAATCATTGA 4002073 32 100.0 34 CAATCATTGA ................................ AGCTCCCTAAGTGCTTTGGTGAGCCTGTATGCTT 4002139 32 100.0 33 CTGTATGCTT ................................ GTCGAATCTAACCTGCTGACGTTTACGTTTTAG 4002204 32 100.0 38 TACGTTTTAG ................................ AAGAGGAGCGTTTGTCCGAAGAAATGCTAAAAAATGTA 4002274 32 96.9 34 AAAAAATGTA ...................T............ CCGATCCTGGCGGCTGCTCTCACGGGCGAGCGTT 4002340 32 100.0 38 GGCGAGCGTT ................................ TCTTGTTTGTCTTGTCCAGCATCAACGAGAGAGTTGAG 4002410 32 100.0 35 GAGAGTTGAG ................................ ATCGACTTGTTGATATCATCTATTGCTGTGGAGAG 4002477 32 100.0 36 CTGTGGAGAG ................................ CCCGAATTGTCTCGCGGATCAAAAAAACGATTCAAA 4002545 32 100.0 37 ACGATTCAAA ................................ GTTGCCAACATTTGTTGATCCGTTTGCCCGGTGGCCA 4002614 32 96.9 CCGGTGGCCA ........................G....... GCACTCAACA ========== ====== ====== ====== ========== ================================ 14 32 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.25%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.20,-2.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [381,806] Score: 0.18/0.18 # # Final direction: F [5.28,0.18 Confidence: HIGH] >NC_016645 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 795088 24 100.0 44 AGGAACCCCA ........................ CTGCGGCGCGCCGTAAAGCGCTACGTGGGTCGTCTAGTTGCGCG 795156 24 100.0 44 TAGTTGCGCG ........................ CTGGGATTAGGAGCCTGTGCATGTGTATAACGCGCTCGGGGAGA 795224 24 100.0 43 CTCGGGGAGA ........................ CTTCTTCGGCGCGGCGCTGTTGCTGAGGGCTTTGTTCTCGAAG 795291 24 100.0 42 GTTCTCGAAG ........................ CATCACCCAGGACCTGTGGATCGGCCACGAGGTCGACTTGAA 795357 24 100.0 38 TCGACTTGAA ........................ CCTCGACTGGAACGGTCTCCCCCGCGAGCCACCTCTTT 795419 24 100.0 40 CCACCTCTTT ........................ GACGTGTTTATGCCCGTGGATTTATTGCGTATGGGCTTCA 795483 24 100.0 46 ATGGGCTTCA ........................ CTTTGATGTGTTGCGCGCTCATTTCGTCGTCGGCGGGAGCAGGCCG 795553 24 100.0 42 GAGCAGGCCG ........................ CGAGTCGCTCCGCGAGCTGGCGCTCCTGGCTCCTCAGTTGCT 795619 24 100.0 42 CTCAGTTGCT ........................ CACCTCGTCGACATCTTTACCGAGCCACTCCTTCTCGTATTG 795685 24 100.0 39 TCTCGTATTG ........................ ATGATGGAGCTAGAGGACTTCCTCGTGTTGTCTTTGGCG 795748 24 100.0 39 GTCTTTGGCG ........................ ATGATGGAGCTAGAGGACTTCCTCGTGTTGTCTTTGGCG 795811 24 100.0 40 GTCTTTGGCG ........................ CTTCTCCTCCTCGACCTCCTCCTCTTCCGATTCTCTCTCC 795875 24 100.0 41 TTCTCTCTCC ........................ GGAGGCCGTGGCGAGCTTCTTCGGCTTCGAGGCGCCCAGGG 795940 24 100.0 43 GCGCCCAGGG ........................ TCGCTCTGCTGGCATACGGCTTCTACGTCTACTACCAGACGCT 796007 24 100.0 43 ACCAGACGCT ........................ ACTAGACCTCCCGAGGGACCACGTCATCGACGACATTTTACTC 796074 24 100.0 43 CATTTTACTC ........................ ATGTATGATACTGCAGATAGACTACACGGCGATTATCGAGCTA 796141 24 100.0 43 TATCGAGCTA ........................ CGTTGAAACTGATCGTGATCACTGGCTCCCACGTCCTCCGCGA 796208 24 100.0 38 TCCTCCGCGA ........................ TCTACGTCCAGGGGCTTGACGGCCCTCCGGCCCGTGCA 796270 24 100.0 47 GGCCCGTGCA ........................ CCCCATGGGCACGAGCGCCGTGTAGAGCTGCGGCCCAATCCGCCGCG 796341 24 100.0 46 ATCCGCCGCG ........................ ATACCAATACAACACGCTAACCATCGTCCCAGACACCTCAATCTAC 796411 24 100.0 37 CTCAATCTAC ........................ TCACCACGCGGCCGCACTGCCGCGCCCTTAAAAACAC 796472 24 100.0 44 TTAAAAACAC ........................ CGTGCGTATTGTCTTGCTACTTATGTCGAAGTCTCTCGAAACGA 796540 24 95.8 44 CTCGAAACGA ..................G..... CTATACTCCTCTGGAAAAGTGCCGCCTTCTGTTGCGAGAAGTAT 796608 24 100.0 43 CGAGAAGTAT ........................ CGGTTATGGCGACTCTCCACGGGGTCTTGAGGAGCATGATAAT 796675 24 100.0 37 GCATGATAAT ........................ GTACTACAGCCTCTGGTCCACCGGGAGGTTGCAACTG 796736 24 95.8 43 GTTGCAACTG ...................A.... CTCTACTTCTTTCTCCACCCCAGTCTCCATAGCGTATACCTGT 796803 24 100.0 38 GTATACCTGT ........................ AATACCGAGCCAAAACGGATTGGGCCGCAGCTCTACAC 796865 24 100.0 38 AGCTCTACAC ........................ CTTGACACCGAGCTTCTGAAGCCACTCCCGCACCCTCT 796927 24 100.0 46 CGCACCCTCT ........................ ACATCACTATCAAGACCGGCGCCGTGCTGAACTACGACGAGTTTGA 796997 24 100.0 42 ACGAGTTTGA ........................ TTACTCCTCAGCTCCTTGATGAAGGGAACGGCGTGCCCCGCG 797063 24 100.0 45 GTGCCCCGCG ........................ ACCGAGAGGCTGAGGCAGGTGACCCTGCGGGACGTGGAGGATGCG 797132 24 100.0 40 GGAGGATGCG ........................ TAAGTATACTCATTGCTTCTTCATGCCTTGTCTTACCTGT 797196 24 100.0 42 TCTTACCTGT ........................ TACTGCTCGGTCTCTGCGACTATTCTGTCGTCGTACTCAACG 797262 24 100.0 45 GTACTCAACG ........................ TACGTACGCCCACGCGCTCACAGTCAACTTCACCTCGCTCAAGCT 797331 24 100.0 39 CGCTCAAGCT ........................ AGCCTCTCGAGAGCCTTCTGCCTGTCGACTGTCAGCACT 797394 24 100.0 47 TGTCAGCACT ........................ GGTGGTGTATCAAGACGCGTGACGCAGGCCTGTCGCCGTATGATCCG 797465 24 100.0 39 GTATGATCCG ........................ ACCACGGCGGACTCCACGAGACCTCGCGCATGCTCTGGA 797528 24 100.0 38 ATGCTCTGGA ........................ CTGCGTCCGCGACTTCAGCTTGGCCTCCAGCACGGCGT 797590 24 100.0 45 AGCACGGCGT ........................ GCGGATAAGGCTCAGAGCCCCCAAGCGCCTCCCGCGGTCTCCGCA 797659 24 100.0 46 GGTCTCCGCA ........................ CACTGCCCGAGTTGCCAGGCACAGCCGGCTTGTCGGTCCTCACATA 797729 24 100.0 45 TCCTCACATA ........................ GCCACCTCGGCATGCGCCTACACGGGCCGAGGATCGTGCTTGTCT 797798 24 100.0 41 GTGCTTGTCT ........................ GCGGTGCGATCCCACCTCACGGCCACCAGCTCGCTGTCGCC 797863 24 100.0 45 CGCTGTCGCC ........................ CGTGTACGTGTGGCCACACCCGGTCAGGTCAGAGCTGATAGAGGC 797932 24 100.0 40 TGATAGAGGC ........................ GCGCAGTCTGTAGGCCGGCAGAAACGTGTCGGTGTTGTAG 797996 24 100.0 43 GGTGTTGTAG ........................ TCTCCAGCTCTTCCCTCGACACCTGTTCGTACGCGCTCCTGTA 798063 24 100.0 40 CGCTCCTGTA ........................ ATTTCGGCCATAGCCTACCTACCGGGTAGCATACGTGCGT 798127 24 100.0 50 ATACGTGCGT ........................ TGTAGTAGCGTTCGGCGATCATGTGAGTAAGCACAGCTGTGTATATAAGT 798201 24 100.0 40 GTATATAAGT ........................ TTCAACAGTCCGGTGGAGTTCATGCTTGTGAGGATGTATG 798265 24 100.0 42 AGGATGTATG ........................ CCCTCGCCAGCGGCGGCGCCAGCCGCTGGCGCACAGCAGATT 798331 24 100.0 41 ACAGCAGATT ........................ GTGATAAAGATGGCTAGTAGCACCACCGCGAAAAATGGCAA 798396 24 100.0 40 AAAATGGCAA ........................ ACGCTTTTGTTTACACGACGTTGATCGGCGGGGTGTGTGA 798460 24 100.0 42 GGGTGTGTGA ........................ ACCATTGGGTCAAGGACGGTGTCGCCAGGCTTTGTATACATT 798526 24 100.0 42 TGTATACATT ........................ GTCTTCTACGCCTATCAGCCACGCCCCCACGACGTCTTCGCT 798592 24 100.0 45 CGTCTTCGCT ........................ CGATGTGTCTGTCTGCGGTTGTCAGCAGATTCCTAACCGTGTACA 798661 24 100.0 45 ACCGTGTACA ........................ AGGCCAGGTATCGCGAGAGCGATCTTGAGATCATCAGAGACACGT 798730 24 100.0 45 AGAGACACGT ........................ GCGACGGATGTCGGCTACTACTTCAGCACAGACGTGTGGCTGTAC 798799 24 100.0 GTGGCTGTAC ........................ CTCTACCCGT ========== ====== ====== ====== ========== ======================== 57 24 42 GTATCTCAAAAAGAGGATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: F [matched GAATCTCAAAAAGAGGATTGAAAG with 95% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [61.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [100,180] Score: 0/0.18 # # Final direction: F [5.27,0 Confidence: HIGH] >NC_016641 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 4011196 32 100.0 35 CATTTTCGCT ................................ ATCCGGAAAATAGGAAATTGCAAAAGGGATTGAAT 4011263 32 100.0 35 GGGATTGAAT ................................ CTGTTGTTGCACATTGCAACCAGCTAGTAAAGCCG 4011330 32 100.0 34 AGTAAAGCCG ................................ ATTTGAGAGAACGACAAGAGTTTAGCTATCAGAC 4011396 32 100.0 38 GCTATCAGAC ................................ CCTACGCTCCCACCACCTGCCCATTCTGGCAAGTCAAA 4011466 32 100.0 35 GCAAGTCAAA ................................ GGGAGCTGGTACGGCCTCTATCCCTTTTAGGGTTG 4011533 32 100.0 32 TTTAGGGTTG ................................ ATCCAGGTCGGAAGGGAGTTGCAGAACCATTG 4011597 32 100.0 37 AGAACCATTG ................................ CGTGATATGTGGCGGCAAGGGTACAGTGTGGAAGAGA 4011666 32 100.0 31 GTGGAAGAGA ................................ AACAAGGAGCCTGGCTTAACACGAATGTAAA 4011729 32 100.0 35 CGAATGTAAA ................................ AAACGCTATTGCCCGGCCCCGGTATGATCCGTCAT 4011796 32 100.0 38 GATCCGTCAT ................................ ATCGTAGGCCGTGACGGTCATCTGACCCATGCTGTCGA 4011866 32 100.0 ATGCTGTCGA ................................ AATCTGAACCTC ========== ====== ====== ====== ========== ================================ 11 32 35 GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.12%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.50,-2.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [200,192] Score: 0/0.18 # # Final direction: F [4.87,0 Confidence: HIGH] >NC_016641 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 4012488 32 100.0 36 CATTTTCGCT ................................ AGCTTTTTTTGCTATGATTTGGGCCTCTTGATTTTC 4012556 32 100.0 34 CTTGATTTTC ................................ AGCTTTTCGAGCATAGCCTTCAGGTAATCAAGTA 4012622 32 100.0 37 TAATCAAGTA ................................ AACCAACTTTTTACGGTACTTATTGAGCGTATCTCGG 4012691 32 100.0 36 CGTATCTCGG ................................ TGATATTTTGCCTATTAAAGTCAATCAGGTTTTAGG 4012759 32 100.0 34 AGGTTTTAGG ................................ TGTTGGGTAGGGTAAGAGGCTGTTATACCTCAAA 4012825 32 100.0 35 ATACCTCAAA ................................ TCTAATACACCACCCACATTCATACCATTTTTATA 4012892 32 100.0 35 CATTTTTATA ................................ CGGAAAAATCGCAGGATGCTCAAAGGTGATTTTAT 4012959 32 100.0 34 GTGATTTTAT ................................ GCGAAGTAACAAGCACCATCTTTTCGTCTGATGG 4013025 32 100.0 35 CGTCTGATGG ................................ CTTTTGCATATCACGAAAATTGAAAGTGCTCTTAG 4013092 32 100.0 33 GTGCTCTTAG ................................ CTTTGACAGCTTCGCACAGCACTTCGCCTTTCG 4013157 32 100.0 34 TCGCCTTTCG ................................ CGCGGAACAGGTCTTGAGAGCAATGAGTATAGAC 4013223 32 100.0 34 GAGTATAGAC ................................ ATTGGAAATTCGCGAAATACTTTGATCTCTTTGC 4013289 32 100.0 34 ATCTCTTTGC ................................ CAGATACTGCACAAGGCATCGTAGATGATTATAT 4013355 32 100.0 36 ATGATTATAT ................................ TGTTTGAAATTTGACATGATTTATCGTCTCCTTAAA 4013423 32 100.0 35 TCTCCTTAAA ................................ CTGATTTTATTGATAGTAGCTTGATCCACGATCTA 4013490 32 100.0 35 CCACGATCTA ................................ CTGATTTTATTGATAGTAGCTTGATCCACGATCTA 4013557 32 100.0 CCACGATCTA ................................ TAGAAAGTTTAGAGGAGTACGATTTGCCCTCGGA ========== ====== ====== ====== ========== ================================ 17 32 34 GTCGCACTCCATATGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.12%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [279,713] Score: 0.18/0.18 # # Final direction: F [5.14,0.18 Confidence: HIGH] >NC_016645 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 277565 25 100.0 41 AAAACCAGCC ......................... ATATATCTAACGGATCGGCGTGGGGGTGTGGGTTTGCTCGC 277631 25 100.0 43 GTTTGCTCGC ......................... TTATTTTGGGGGAGGGAGTTAGGCGGTGGTGGGGGGCGGCCGA 277699 25 100.0 40 GGGCGGCCGA ......................... GCGAGTATCTCGGCGGTTGCCAATCGGAGGGTTACAGTGG 277764 25 100.0 43 GTTACAGTGG ......................... TGATCTCTTCTTTCGCCAGGAAAGATACTAGCTTGGCTATCCA 277832 25 100.0 39 TGGCTATCCA ......................... GCATACTGACTGTCTTTAATCCACACAAACGCAGACGGA 277896 25 100.0 48 CGCAGACGGA ......................... GCCAGAGCGCACGCCACAGCGCTGTCGCGCCCCCCGGAAAACCAGCAG 277969 25 100.0 46 AAACCAGCAG ......................... TGATGATGGGATCCTCAGTCATAATCCCGGCGCTTCAGTTTTTTAC 278040 25 100.0 45 AGTTTTTTAC ......................... GAAAAGAATATTGGCGCGTATGACTTGCCCGTGCCAGGTGGGCCG 278110 25 100.0 45 AGGTGGGCCG ......................... AATACCTTTGCGCAGGTAGGTACATGTCCAAGGCAACCAACCTAA 278180 25 100.0 42 ACCAACCTAA ......................... GTCCACCATGAAGTTCAATGTGTAGTAAGCCTCTGTAGACGT 278247 25 100.0 42 CTGTAGACGT ......................... GGCCTCTGCACCTGCCACGTGGTTGCTGGCACCTGCGTCGCC 278314 25 100.0 41 CTGCGTCGCC ......................... AGATTTTCAAGCAGAAGCTTGGGTAAATCTGGAATCTTGCT 278380 25 100.0 43 GAATCTTGCT ......................... GTAGAGCAACTTCATAGGCTGGCAGTGATCCCTCAGCCATCTC 278448 25 100.0 45 CAGCCATCTC ......................... GCGTGCTCTATGACGTCTCTCGCCTCCCGCAGGAGGGTGTCGTGG 278518 25 100.0 42 GGTGTCGTGG ......................... GCAATGGGGTTGCCCGGCGGTATGCCCGCGTGCTCCGTCTTT 278585 25 100.0 44 CTCCGTCTTT ......................... TCGTACTTACCACCGGTAGTGTAGACCATCTCTATAGACGCCAC 278654 25 100.0 46 TAGACGCCAC ......................... CCCACCAGCGATGTCCCAGTGTAGTCCAGCAGGAGATCGGGGGCGC 278725 25 96.0 TCGGGGGCGC ..G...................... TAGTTGTTAT ========== ====== ====== ====== ========== ========================= 18 25 43 CCAGAAATCAAAAGATAGTTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [366,83] Score: 0.18/0.18 # # Final direction: F [0.86,0 Confidence: HIGH] >NC_016641 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 5628041 32 100.0 33 CACTTTGTTA ................................ ATTGCTGTACAGTGTACAGCCGCTTTTCTGCCT 5628106 32 100.0 37 TTTTCTGCCT ................................ GAATCCAGTTTTTTGGGTTTAGGAAAGTATAGTAACG 5628175 32 100.0 38 TATAGTAACG ................................ ATGCGGGAGAAGATCGAACGTTTGGGTGGCATGGATAT 5628245 32 100.0 38 GCATGGATAT ................................ GCGGTCGATGGCGAGATATCACGCGTGTTCATGTTCGA 5628315 32 100.0 37 TCATGTTCGA ................................ GCGGCAATTGCGAATGTAGATGGTCCTGATAGACTCA 5628384 32 100.0 34 GATAGACTCA ................................ TTCCGGCTCAATCGGGAGCTACATGGTTACATCG 5628450 32 100.0 38 GGTTACATCG ................................ TACGTACCTCAGGAGCAAGTCACGCTGAGTGCTCCAGT 5628520 32 100.0 37 GTGCTCCAGT ................................ TCGGAATCCTATTTCTGAGAGCGACCAACTCAGTTAA 5628589 32 100.0 ACTCAGTTAA ................................ AGCGAAAATA ========== ====== ====== ====== ========== ================================ 9 32 36 ATTTCAATCCACGCACTCATATAGAGTGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.25%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.60,-3.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [371,364] Score: 0/0.18 # # Final direction: R [0,5.14 Confidence: HIGH] >NC_016645 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================== ====== 761756 22 100.0 46 CGCCTATCAT ...................... TGGCCGTAGGCGGCGCCGCACAGCAGGCGCAGGTCAAGGTGACGTA 761824 22 100.0 49 AGGTGACGTA ...................... TGGTTGGCGAGAGGTTCGGCTGTCTTGCGTATGGCTATATCTTTATCGC 761895 22 100.0 45 TCTTTATCGC ...................... TGGGCCGGGCAACTCCGGTGGGCCGGCATATCTGAGGCAATGATT 761962 22 100.0 46 GGCAATGATT ...................... TGGTTGCCGAGATGGTTGTGCTGAATTACTACACGTTACTTGTCTG 762030 22 100.0 47 TACTTGTCTG ...................... TGGTATGAGTGCCACCGGTACCCAACGTACTGCGCCCACAATATTCT 762099 22 95.5 45 ACAATATTCT ............C......... CGGTAGCTTAGTTGCCACGCACTCCGCGTAGCTCTCATGCCAGTA 762166 22 95.5 46 CATGCCAGTA ...........T.......... CGGCGCTGTACCCGTAAAACTGCCTCCCCTCCAGAATCCAGTCCTC 762234 22 100.0 43 TCCAGTCCTC ...................... CGGCCGCGATCCACTTGCGCGGTAGAGCGTGATCGGGGTAGAA 762299 22 100.0 48 CGGGGTAGAA ...................... CGGCTGTACCTAAGCGACTATGACATGTGCTTGCGTTGTAGGGATGGT 762369 22 100.0 47 TAGGGATGGT ...................... CGGACTGGCGCCAGGCTCAGGAGGGTCAAGGCGGGTAGCCTCAGGCT 762438 22 100.0 51 GCCTCAGGCT ...................... TGGGTCGGGGCACGCCCTGACGCGGATCCCCAGCTTCCTCCCGGTGTTTAT 762511 22 100.0 42 CGGTGTTTAT ...................... TGGGGTCCTGAGGAAGATTAATTCGCGTTTAGCTGGCCCCAG 762575 22 100.0 46 CTGGCCCCAG ...................... TGGATACCTCCAGAAAGAGCGGGGGAGCCGCCTCAGACAGATATAT 762643 22 100.0 46 ACAGATATAT ...................... TGGGACATAAGGAACGCAGTTGACGTGGAGTACCTCCGCGCTGTGA 762711 22 100.0 43 CGCGCTGTGA ...................... TGGCCGGCGTCTAGTAGCAACTTGGCAACTTCTACACTGTTGC 762776 22 100.0 44 ACACTGTTGC ...................... TGGTCCCTAGTCCCATAAACTAAACCCACGCTTTTTTCAAGGGC 762842 22 100.0 TTTCAAGGGC ...................... TGGGGCTGGTTTT ========== ====== ====== ====== ========== ====================== 17 22 45 GTTTCAACTATCTTTTGATTTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.73%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [155,33] Score: 0.18/0.18 # # Final direction: R [0.18,0.68 Confidence: MEDIUM] >NC_016645 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 837615 25 96.0 41 CATAAGCGTA -........................ AGCGAAATTAAGCGGCTATGGAATATCGAGATTTTGCGGGA 837681 25 100.0 42 TTTTGCGGGA ......................... CATGTTTTGGAGGGAGGAGGCGGAGGACGTCACTGTGATTTT 837748 25 100.0 42 CTGTGATTTT ......................... CGAGGCCATCTACCACCTCGACAGGGAGTACAGCGGCTGGGT 837815 25 100.0 41 GCGGCTGGGT ......................... GCTACTAACGATTTGAAAGTCAGTGTGAAAAACGCTATTAG 837881 25 100.0 41 ACGCTATTAG ......................... TGGATCAGGTTGTGGGCTGACGGAGGCTGGGAAGTTGTCGA 837947 25 100.0 37 AAGTTGTCGA ......................... GGGACCTGCCTGCGGCCTTTCACAACGGCCTCTATCA 838009 25 100.0 46 GCCTCTATCA ......................... GACCAGGCGACGTGGCCTTGGTGGTCAGGTTGAGGACAAGGCCCAG 838080 25 100.0 41 CAAGGCCCAG ......................... GCGCTCGCAATCATGGAGGAGGCAGCGTCAGTAGAGGTTAG 838146 25 100.0 39 TAGAGGTTAG ......................... TTCGGAGACCTTCGCCCAGGCCCTCGCCTACTGGATCCA 838210 25 100.0 39 ACTGGATCCA ......................... TTCGGAGACCTTCGCCCAGGCCCTCGCCTACTGGATCCA 838274 25 100.0 46 ACTGGATCCA ......................... GAGGCTCAATATCCGCGGCTCTGATATGAGCTATGTTATGAATGTG 838345 25 100.0 39 TATGAATGTG ......................... TGAACCGTATGGGCATCTATACGCTGTGCGTAAGTCGTA 838409 25 100.0 41 GTAAGTCGTA ......................... AAGAAGATTATCTACTGCGCAGAGCATGAACGTGAAAAAGA 838475 25 100.0 39 GTGAAAAAGA ......................... TGTTATGGACATGGCAATAAGGGTTAAAGAAGTCGGCGA 838539 25 100.0 42 AAGTCGGCGA ......................... ACAGGCTGACAAGCGTACACAGAGGCAGGAGAAAAGAGCCGA 838606 25 100.0 41 AAAGAGCCGA ......................... CAGACAAGTCGACAGCATCAAGACCGTCGTCGAGATAGTAG 838672 25 100.0 42 GAGATAGTAG ......................... GTTGGGTGATATTCCTGGGTGGCACGTGGTGCGTATCACTCA 838739 25 100.0 44 GTATCACTCA ......................... AGGCTATGGGGAGGGCGCTAGCCCTGCTGATAGCCACACTCGCG 838808 25 100.0 39 CACACTCGCG ......................... CTAGCGTTATTCTCTCACCTTTTAGATACGATCCGAAAT 838872 25 100.0 43 GATCCGAAAT ......................... TATGTAAAGTTTCTTCTGGATACTTTTCATAACGTAAAACCAA 838940 25 100.0 36 GTAAAACCAA ......................... GGCGGGCAGTGCCGGCGGCCAGGCCGTTATAATAAG 839001 25 100.0 42 TTATAATAAG ......................... ATATTCGCCGCGGCGTGGTCCTCCGTGTCGAGGATAAACTTT 839068 25 100.0 37 GATAAACTTT ......................... CGTGCCGAGGTTCAACGCACCGTCGGCGCTGGGCAAC 839130 25 100.0 GCTGGGCAAC ......................... TGTGGGTTTT ========== ====== ====== ====== ========== ========================= 24 25 40 GTTTCAATTCTTTTGTAGGTTCTTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [87,338] Score: 0.18/0.18 # # Final direction: R [0,5.36 Confidence: HIGH] >NC_016645 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 852183 25 100.0 38 AAAACCCACA ......................... TGTGCTAGTGAGTTTTGTCGCAGTTGCGAATTCTGTGA 852246 25 100.0 42 AATTCTGTGA ......................... TCAGTTGAAAGCCGAGATAGTTGAAAGGTGGGTGGGGACAGT 852313 25 100.0 42 TGGGGACAGT ......................... TTAGTAGGTTTATAGGATAATGGCCTACCCCTTTTACCACCA 852380 25 100.0 41 TTTACCACCA ......................... ATTTTGCCGAAATACCTACTCCACTGGGGACACACAATTTT 852446 25 100.0 41 ACACAATTTT ......................... GATGGAAAAAAAGGGGGGGCTACTTGAATACGTACGTCACA 852512 25 100.0 40 GTACGTCACA ......................... TTAGATGGCTTACTACTGGAGGGGCGCCCACGCGCACTGT 852577 25 100.0 38 CGCGCACTGT ......................... TCGTGCGGCAGTGAAAGCAACGCGAAAAACGCCGCCTG 852640 25 100.0 42 ACGCCGCCTG ......................... AGCCAAATACCGCTCATAGAAGCGAGTTAGTAAACTGGCCTC 852707 25 100.0 36 AACTGGCCTC ......................... TTAATGTGAAGAGCGTAGCTCCTCTTGCCCCACGGC 852768 25 100.0 40 GCCCCACGGC ......................... ATGATAGCCCGCTCCTCCTCACCCTCAGGCATACAGCAGT 852833 25 100.0 42 ATACAGCAGT ......................... GTTGTACTAGATGGCTGTATAGGACTTAAATATGTGACAACA 852900 25 100.0 42 TGTGACAACA ......................... TTAATAGGTACGTATACTAAGATGCCCCTCCTCCTAGTCTTT 852967 25 100.0 38 CCTAGTCTTT ......................... GCCTATATACCGCGGTGCGCAGGTCGCGCCTGACTTCT 853030 25 100.0 42 CCTGACTTCT ......................... ATTTTTGCGCGCGCTACGACATCCAGCGCCTGTATGCTACGT 853097 25 100.0 40 TATGCTACGT ......................... TACATCTAGCACCCCATATTTCCTAAATGAACCTTTCATT 853162 25 100.0 43 ACCTTTCATT ......................... TATACCTGCTTATTTTCTCGTTTATTTCAAGTATTTCAAAAAT 853230 25 100.0 41 TTTCAAAAAT ......................... TAATCACCCCAAATTCCACCATACATAACGTAAATGCGGTA 853296 25 100.0 42 AAATGCGGTA ......................... ACAGCACTGGGTCGTCTGTAGGCGACAGTCCCGTGTACCTCA 853363 25 100.0 42 GTGTACCTCA ......................... ACTGTAGAGCTTTAGCTGATAGCTCGACCGTGGCGGCTTCTT 853430 25 100.0 40 GCGGCTTCTT ......................... TGATTGGAATTGGGGGGAGAATTGGGGGGCGGTATGCGCG 853495 25 100.0 40 GGTATGCGCG ......................... TTTATTGTAGCGTTGGGCTTAGCATTCCATATCTCAGCCG 853560 25 100.0 ATCTCAGCCG ......................... AGAAAATATG ========== ====== ====== ====== ========== ========================= 22 25 40 GAAGAACCTACAAAAGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [470,1757] Score: 0.18/0.18 # # Final direction: F [4.77,0.18 Confidence: HIGH] >NC_016645 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 845782 25 88.0 42 TATATCGCGC --................A...... CAGGATTATATTAGAGAAGATCAACTTAGATCCCCCGAATGG 845849 25 100.0 40 CCCCGAATGG ......................... AGGCTTAAAGAGCTGTACGAGAGCATACGCAGAATAGCAA 845914 25 100.0 41 AGAATAGCAA ......................... ATCAGAGACGTACCGCTCCTAGTTGCGTACAAGTGCAACGG 845980 25 100.0 43 AGTGCAACGG ......................... TCGACCTGCCAATAGTGCCAGTCCTCCACGGCAGGACCCCGGA 846048 25 100.0 42 GGACCCCGGA ......................... CTTATGATTTCAGCGAGTGGCTGTGTGCTTATGATTATGAGA 846115 25 96.0 42 GATTATGAGA ..................A...... CTCTACGCCTCCGTTGCGTCTGAGCACCTTGACTACCTTCCT 846182 25 100.0 41 CTACCTTCCT ......................... CAGAGGTATTGATGTCGCGTCGTGTTTAAGCCACAACTCAG 846248 25 100.0 43 CACAACTCAG ......................... ATCGAGGACTTGTTCACAATCACCACAGCAACAATGCCTACTG 846316 25 100.0 36 ATGCCTACTG ......................... CTCACGGCGGTCTGAGTGTACACGAAGTTAATTTAT 846377 25 100.0 43 GTTAATTTAT ......................... ACAGACATTATCAGTAATAGGGATGTGGGGTCTGATATTGCAG 846445 25 100.0 40 GATATTGCAG ......................... TAGTGCTGGAGGGTGGAGGTGTTGTTGAGATTAATATCAA 846510 25 100.0 39 TTAATATCAA ......................... ACTCCACCGCGGAGCCCGTATACTCGACGCCGTCGACTC 846574 25 100.0 41 CCGTCGACTC ......................... TAAAACAAAATAATTCTCTCAATAAAAGTCAACTCTTTGTA 846640 25 100.0 35 ACTCTTTGTA ......................... AAGGTATTTGGCGCTACTGGCAGACCATATCTAGC 846700 25 100.0 42 CATATCTAGC ......................... ACGGGGGGTGGTCTAAAGCATATGCCGCTGAGGAAGTGCTAA 846767 25 100.0 44 GAAGTGCTAA ......................... TAGATCAATGCGTGAACGTGGGATATACACTCTGCTTACTCTAA 846836 25 100.0 43 CTTACTCTAA ......................... GTAAGAAAGTGACACAGAGAGACAGATGAGATATGCAGGCGCG 846904 25 100.0 44 TGCAGGCGCG ......................... CCCCCACCAAAATCCTACCCCAAATCGCCGAGGAAATAAATGCA 846973 25 100.0 40 AATAAATGCA ......................... AAGAGAATACGCGCGCCACGCCGAGCCACAACAAGAAAAA 847038 25 100.0 40 ACAAGAAAAA ......................... CAGGAAAGCAGATAGAGGCGCATTCGTTGGCATAGCTAAG 847103 25 100.0 36 CATAGCTAAG ......................... CCCCAAAAACCCCAAAGAAAACTTTTTCATAGACAT 847164 25 100.0 42 TCATAGACAT ......................... CGAGGCCGTCAAAATCAAGTCGAACTGGATATGAGTACATTA 847231 25 100.0 37 GAGTACATTA ......................... TTGCTAATTCTTTGCGTGATGTGGTTAGGATATGCGG 847293 25 100.0 37 GGATATGCGG ......................... TTGCTAATTCTTTGCGTGATGTGGTTAGGATATGCGG 847355 25 100.0 43 GGATATGCGG ......................... CGGGTTTAGGGTCATGGAGTGTGTATCATACGACTCAGTGTGG 847423 25 100.0 40 CTCAGTGTGG ......................... ACCACTTGTAGCTCGTGCCCCACGTTGCAACTAGCGTAAA 847488 25 100.0 37 CTAGCGTAAA ......................... ATGCTGAGTCTCAGAATATGGCCTATGCCAGGTGGAC 847550 25 100.0 38 CCAGGTGGAC ......................... TCATAACCAACAATTTTGTATTTGGCCACGTAGCTTTA 847613 25 100.0 36 CGTAGCTTTA ......................... GAAGACGCCATACATCTACATCCAAAAAGATTACAA 847674 25 100.0 36 AAGATTACAA ......................... GAAGACGCCATACATCTACATCCAAAAAGATTACAA 847735 25 100.0 36 AAGATTACAA ......................... GAAGACGCCATACATCTACATCCAAAAAGATTACAA 847796 25 100.0 36 AAGATTACAA ......................... GAAGACGCCATACATCTACATCCAAAAAGATTACAA 847857 25 100.0 42 AAGATTACAA ......................... ATTAGGCTGGATTTAGTGCCTTATCGCTTAGTTGATATTTTA 847924 25 100.0 40 TGATATTTTA ......................... CCATGGAGTCACAGATCGTGGCAACTATAGAAATGTGGAT 847989 25 100.0 41 AAATGTGGAT ......................... TTTTTACGTCTGTGGATGGGATTCGCTTGGGGGTTGGGGGT 848055 25 100.0 38 GGTTGGGGGT ......................... TACAGGCTGTTGCCTGAAGAACTGGTCAGAGAAATAGA 848118 25 100.0 41 GAGAAATAGA ......................... CTGGATATGAGTACGTTTTGTACCACGCCAGGCTACTTATT 848184 25 100.0 GCTACTTATT ......................... TGTGGGTTTT ========== ====== ====== ====== ========== ========================= 38 25 39 GTTTCAATTCTTTTGTAGGTTCTTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [150,353] Score: 0.18/0.18 # # Final direction: R [0,5.36 Confidence: HIGH] >NC_016749 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1412482 36 97.2 30 GCATATTAGT ......T............................. TTTCTAATACGAATTTTCGTATATTGTTTT 1412548 36 100.0 30 ATATTGTTTT .................................... CTGGATAAATACGGAATACCAGTTAGTAAT 1412614 36 100.0 30 AGTTAGTAAT .................................... TAAAGAAATTACCTTTGAAGTGCCTATTTC 1412680 36 100.0 30 TGCCTATTTC .................................... TGCAAATCGAGCTAGGTTGGATTACTATCG 1412746 36 100.0 30 ATTACTATCG .................................... GAAAAAGTCGTAATGTTTGACGGTAAGCCG 1412812 36 100.0 31 CGGTAAGCCG .................................... CCAGAAGCGTTCGCTGATTTGAAAACAAAAT 1412879 36 100.0 30 AAAACAAAAT .................................... TTCATACATCACCTCAAAATACAATCATTT 1412945 36 100.0 30 ACAATCATTT .................................... TAGTACGTGGCATAGGTATCTACCACAAGC 1413011 36 100.0 30 TACCACAAGC .................................... ATGAGAAAACTCTTACATATCAAACACTTG 1413077 36 100.0 29 CAAACACTTG .................................... TCTGGGCTATAAGTGACATCAACATACGA 1413142 36 100.0 30 CAACATACGA .................................... CAATGTGCCTAACCAATGAAAACAAGCTTT 1413208 36 100.0 30 AACAAGCTTT .................................... AGCTTGTTGTGACAAGGTCTTCATGGCTTG 1413274 36 100.0 30 TCATGGCTTG .................................... AATTGTGCTTCTACTGCTCTATTCAGTTCA 1413340 36 100.0 30 ATTCAGTTCA .................................... AACCTACATACCCTTGTTTACCTGTTTTAC 1413406 36 100.0 30 CCTGTTTTAC .................................... CTGGTACTGGTTACTTTAACAGCGGTTATC 1413472 36 100.0 30 AGCGGTTATC .................................... ATAAAGTTGTTGACTATGATGAAGAAATAA 1413538 36 100.0 30 GAAGAAATAA .................................... ATACGCTTTAAAACTAGCTATGACTAACGA 1413604 36 100.0 31 TGACTAACGA .................................... CGTATATCAAACTCAGGAATAACCGCATTCG 1413671 36 100.0 30 ACCGCATTCG .................................... AGTGAACCGCCAAACCACTTGGGGACGGCG 1413737 36 100.0 30 GGGGACGGCG .................................... TCGTAGAGACGATACTAACTACAGGCCTAT 1413803 36 100.0 30 ACAGGCCTAT .................................... ACACGAACTGGGCTGCTTGTTTTGTTTGAA 1413869 36 100.0 30 TTTGTTTGAA .................................... TTACTGCGATAGAATTATAGCCTGCTTCAT 1413935 36 100.0 30 CCTGCTTCAT .................................... CTACTTAACGTCCTTACGCATTTCGATGGA 1414001 36 100.0 30 TTTCGATGGA .................................... TAGCGATTGCAGGAATTGCCGCTTTAGTAG 1414067 36 100.0 30 GCTTTAGTAG .................................... AAAACTTATTATGTTTGGTTGCGAAAGGCA 1414133 36 100.0 30 GCGAAAGGCA .................................... GCTAGAGCCGTATCAACCTAGCTGGAAGTA 1414199 36 100.0 30 GCTGGAAGTA .................................... GCTGTTTCAGAAACATTGAGTTTAGCGGTT 1414265 36 100.0 30 TTTAGCGGTT .................................... GTTCATCTTGCGTGAGCCCAGCTTCTTTGC 1414331 36 100.0 30 GCTTCTTTGC .................................... CACTCGCTTATGTTGAACGTGAGCTTGTAG 1414397 36 100.0 30 GAGCTTGTAG .................................... CAAGCATTGTTTTGTAAACTGCCATTTGCA 1414463 36 100.0 30 GCCATTTGCA .................................... ACAGTGCAAAACCTTCATAATTGATGAAAA 1414529 36 100.0 30 TTGATGAAAA .................................... GCCAATGGAAACTGATAACAGCTTGTCATA 1414595 36 100.0 30 GCTTGTCATA .................................... CAAGCATTGTTTTGTAAACTGCCATTTGCA 1414661 36 100.0 30 GCCATTTGCA .................................... GTGAAGACACCTGCATTGAACATCTGCGTC 1414727 36 100.0 30 CATCTGCGTC .................................... ATATCGCTTATGCTGATAATGCCACAGGCG 1414793 36 100.0 30 GCCACAGGCG .................................... AAGCAGGGCTTTTTCTTTTTGGGCAGGCGC 1414859 36 100.0 30 GGGCAGGCGC .................................... TTAGAAGTGCAGATGTTAGAAAAGAAATCA 1414925 36 100.0 30 AAAGAAATCA .................................... TGGGAGAAAGATAGCAGTTATCCAATCATT 1414991 36 100.0 30 TCCAATCATT .................................... AGAGATTGTCAACAAGAACCAATCAACCAA 1415057 36 100.0 30 AATCAACCAA .................................... AAGCAGGGCTTTTTCTTTTTGGGCAGGCGC 1415123 36 100.0 30 GGGCAGGCGC .................................... TTAGAAGTGCAGATGTTAGAAAAGAAATCA 1415189 36 100.0 30 AAAGAAATCA .................................... TGGGAGAAAGATAGCAGTTATCCAATCATT 1415255 36 100.0 30 TCCAATCATT .................................... AGAGATTGTCAACAAGAACCAATCAACCAA 1415321 36 100.0 30 AATCAACCAA .................................... GCCTTTGATTCACTGGTATGTGTCGTTGCA 1415387 36 100.0 30 TGTCGTTGCA .................................... TCGTTTAGCTTCCAACGCATTCAACTGTTG 1415453 36 100.0 30 TCAACTGTTG .................................... TGTTCCTTGTGTATAACCACCAAAGACTTC 1415519 36 100.0 30 CAAAGACTTC .................................... TTGCCGACAACGCTACTGGTGGCGGATTTA 1415585 36 100.0 29 GGCGGATTTA .................................... CCGAATTTGGCTTGACCTTGTTTTGCAAT 1415650 36 100.0 30 GTTTTGCAAT .................................... CTGATTAGATAGCCATTTTCTCGCAGCCAT 1415716 36 100.0 30 TCGCAGCCAT .................................... ACCAAAGATATGCTGACAACTACGCAGATT 1415782 36 100.0 TACGCAGATT .................................... CTCAAATCGT ========== ====== ====== ====== ========== ==================================== 51 36 30 GTTTTACGGTTACTTAAATCTTGAGAGTACAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:69.44%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [78.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [162,66] Score: 0.18/0.18 # # Final direction: F [0.82,0.41 Confidence: MEDIUM] >NC_016751 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 289919 30 100.0 37 AAAAATTACT .............................. CTTAATAATTCAACAATTACGTCGTCTTTCTTCTATG 289986 30 100.0 37 TTCTTCTATG .............................. CGATGCTATAATTGAAGTTGTTTGTTCGTTTTCTCCG 290053 30 100.0 35 GTTTTCTCCG .............................. CAGTCTCATGATAGCGTTACTTATGGTGGAATTAA 290118 30 100.0 36 GTGGAATTAA .............................. GATGGATAGGAAAAGATAAAATATATAACTTCTTAC 290184 30 100.0 37 AACTTCTTAC .............................. TCTGTTAATCTAAATTGATATGCTTTTTTAAATTCTT 290251 30 100.0 38 TTAAATTCTT .............................. AATTTTTTAAGAACTTTTTTATTGGTATCTAATGCATG 290319 30 100.0 38 CTAATGCATG .............................. AATATTTCAACAGCTTCAAACATGAGCTTTTTAAATAA 290387 30 100.0 37 TTTTAAATAA .............................. CGGTTATACAGTTGTTAGTGAGGGAGTGGAATTGATG 290454 30 100.0 37 GGAATTGATG .............................. ATACCAATTAAGGAGGTTGTTTAATCATGTTATTTGA 290521 30 100.0 40 TGTTATTTGA .............................. CCTCACTTCAAAATAATTTTATGATTTTCAATTTTTCCCA 290591 30 100.0 35 ATTTTTCCCA .............................. AAAATCCAGCTGTTTTGGATGAAATAGAGGAAACA 290656 30 100.0 36 AGAGGAAACA .............................. CAAGATGATGATTTAATGAATCAAGTTCCAACAATA 290722 30 100.0 TCCAACAATA .............................. AGAAATTGAAAATTTAAACTTAGAAGCAAATTTAA ========== ====== ====== ====== ========== ============================== 13 30 36 CTTTCTACAGTACCTATAAGGAATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.00,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [90.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [162,1817] Score: 0.18/0.18 # # Final direction: F [5.14,0.18 Confidence: HIGH] >NC_016751 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 293860 20 100.0 46 TCTTTCTACA .................... TAAGACTAACCAATAATAAGCTGGTAAATGTAAAGCTCTTTCTACA 293926 20 100.0 48 TCTTTCTACA .................... TCTGTCTGTAATTTTACCAAAACTTTCTGATGTATTATCCTTTCTACA 293994 20 100.0 46 CCTTTCTACA .................... TTAAATTCTTGTTATATTAAATAATCCCTGTTTATATCTTTCTACA 294060 20 100.0 50 TCTTTCTACA .................... TACAACAATAAATCCTTTTAAGCCTGAAGGCACTCTTTTAACTTTCTACA 294130 20 100.0 46 ACTTTCTACA .................... TTAAAAATAAAAATTAAATTCTTTTGCATTTAACATACTTTCTACA 294196 20 100.0 46 ACTTTCTACA .................... TTTAAAAAAATTATCTCGTGAAAACGGAATGTATACACTTTCTACA 294262 20 100.0 46 ACTTTCTACA .................... CTTCACTGTCTGTCTCGTTACTCCAACTTTTTCCGCGGTTTTTATC 294328 20 95.0 49 GGTTTTTATC ...A................ ACTAAAAATATTTTGCAACCAGGAAGTTAAATCAACAACTGTTTTTATC 294397 20 95.0 TGTTTTTATC ...A................ AAATAATTTTA ========== ====== ====== ====== ========== ==================== 9 20 47 GTACCTATAAGGAATTGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [73.3-86.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [141,27] Score: 0.18/0.18 # # Final direction: F [4.68,0.27 Confidence: HIGH] >NC_016751 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 396000 36 100.0 42 GAAACCAGCT .................................... AATCCCATTCAACGTTTAATACTTTTTTAAATAACCAATTAT 396078 36 100.0 40 AACCAATTAT .................................... AATCTTTTCTATATACTTTGCACCAACCTTTATATTGCCA 396154 36 100.0 41 TATATTGCCA .................................... AGCGTAACGCTGTTTTCTGTAACCCGTCTTGCTTTTTACAA 396231 36 100.0 40 CTTTTTACAA .................................... TCGTTGCCCTTTCTGAGAATAACCAGAAAAAACCACTTTA 396307 36 100.0 39 AACCACTTTA .................................... ACATTCTTTATCTTGACTGTCTTTACCTTCATCATAACT 396382 36 100.0 41 CATCATAACT .................................... TCTTTTCAACTTCTGCTAAATTGTGAGCTAAGTTTCGTTCT 396459 36 100.0 41 GTTTCGTTCT .................................... TCTTCTTCCAATTCTTTTAATTCTTTTTTGTATTGCTTTAA 396536 36 100.0 41 ATTGCTTTAA .................................... AATAAATTCTACACCATATGGTTTTTTCATTTTACCTAATA 396613 36 100.0 41 TTACCTAATA .................................... AGTATTTATTACCTGTCTTTTATGCGTTTTATTGTACTTTA 396690 36 100.0 41 TTGTACTTTA .................................... TTTGATTTTTAATTGTAATATGTAGAACAATCTTTATTCTG 396767 36 100.0 41 CTTTATTCTG .................................... ATATCTAACAACATAACCTTTAATTAAACCACTATTCTTTT 396844 36 100.0 42 CTATTCTTTT .................................... TTCCAGCTTTTCAATGTGTGGGAATATTATATACTCCCACTC 396922 36 100.0 40 ACTCCCACTC .................................... AGTATATAATACTCCCAATCGTAACCGACAAAAATTTTAC 396998 36 100.0 40 AAAATTTTAC .................................... AAATATTGAAATAACTATAATAAGACTCTTGTAAACACCA 397074 36 100.0 40 GTAAACACCA .................................... AATATTATTCTACCTAACCTTTCACCTTCTATTCTATCTC 397150 36 100.0 41 ATTCTATCTC .................................... ATGAGGTGGAACATGCCACCTCAAAAAATTATATCATATAA 397227 36 100.0 40 TATCATATAA .................................... AATGCTTGATATGCATCTTCCCAACTATTATATTTAATCT 397303 36 100.0 40 TATTTAATCT .................................... TGTTGAATCACTAACTCAGCGCCAGTTATGCCGTCGAAGT 397379 36 100.0 41 CCGTCGAAGT .................................... GAATTACTTCTCCTCTGGCCTTTTTGCGAACCCCATGATGT 397456 36 100.0 40 CCCATGATGT .................................... GTTTATCTATTTCTTCAACCATTAAATTGATTATTGCATC 397532 36 100.0 41 TTATTGCATC .................................... CGTTTTTAAACAACAAACCTCTACCAGTGCGATTAAAAACT 397609 36 100.0 41 ATTAAAAACT .................................... TTTGATAGTGTAGTATAATCAATATCACGTTGAAGATGTTT 397686 36 94.4 GAAGATGTTT ..T................................G CTCCTGCAT ========== ====== ====== ====== ========== ==================================== 23 36 40 ATCCGAATATCACTACTCTCTGAAAGAGATAGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.89%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.10,-3.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [480,141] Score: 0.18/0.18 # # Final direction: F [0.59,0.37 Confidence: LOW] >NC_016751 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 425317 36 100.0 40 GAAACCAGCT .................................... ATAAATAAACTATCTCGTAATTTTTATTGTCTGAAAGTAT 425393 36 100.0 37 CTGAAAGTAT .................................... TTTAGCTGAATAATAATAATTCTTTTCAATGTTGCAA 425466 36 100.0 42 AATGTTGCAA .................................... ACAAATAGAAAATTTTTCATCGAATGAACCATCGTAGAGGCT 425544 36 100.0 40 CGTAGAGGCT .................................... AAATACCTCTAAAACCTTTTTTATTTACTTTTTTTATTAA 425620 36 100.0 42 TTTTTATTAA .................................... GAGGTCATCGAAATACTCGGACTCTATGTCTCCAATAGAGGA 425698 36 100.0 41 CAATAGAGGA .................................... TCTTCTTCTTTTTCTACCCACCCGAATATTCTAAGGTGGGC 425775 36 100.0 41 TAAGGTGGGC .................................... TTCACCTCCTCTGGAGTTGGCTTTCTATATTCAATGATTCC 425852 36 100.0 42 CAATGATTCC .................................... TTCGATCCACCATCTAAGCTGTCATCTCCTTTCTCTAAGGAA 425930 36 100.0 40 CTCTAAGGAA .................................... GCAACTTTTTTAATCATTGTTCTGGGTTTTGTTTTCCATA 426006 36 100.0 40 GTTTTCCATA .................................... AATTTTTCAATCAATTTTTTTACTCTTTCTCTTTCTAACA 426082 36 100.0 41 CTTTCTAACA .................................... GGGTATCATACATCCCCAATCTGAGAAGAATTGGGGATATA 426159 36 100.0 40 TGGGGATATA .................................... ATTGTTACAACATCAGCAATAGTGAAATGATACTCTTCTT 426235 36 100.0 40 TACTCTTCTT .................................... ACTTTTTTCATTATATTTAAAAATTTTCTAATTTTTTTCA 426311 36 100.0 40 ATTTTTTTCA .................................... TAATAATGGTTGGAAAATCGAGGAATGACAATTCATCATA 426387 36 97.2 41 ATTCATCATA ..............G..................... TGCGGTTTAAACTCTCTCCAATTTCCAATAGGAACTACCTC 426464 36 97.2 41 GAACTACCTC ..............G..................... AAAATAATCAAATGCTCCTTCTGCAATCAAAAAATATTCTT 426541 36 97.2 41 AAATATTCTT ..........C......................... CAAGTTCGTCTGCTTCTGGTGATAAATCGATTCTGTCTATA 426618 36 97.2 40 TCTGTCTATA ..........C......................... TTCATTTCCTCGATTTTTTCTTCCTTCATTGATTCAGGTA 426694 36 94.4 GATTCAGGTA T.............G..................... GAAACTATGA ========== ====== ====== ====== ========== ==================================== 19 36 40 ATCCGAATATAACTACTCTCTGAAAGAGATAGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.10,-3.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [625,144] Score: 0.18/0.18 # # Final direction: F [0.59,0.37 Confidence: LOW] >NC_016751 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 414191 36 100.0 42 GAAACCAGCT .................................... TTTTTCGTCAAAACTCCCATCATATAAACTATTAATTGATTC 414269 36 100.0 41 TAATTGATTC .................................... TGGTAATCTTCTGGGATGACAACGTCATCCCATATAAAAAT 414346 36 100.0 41 ATATAAAAAT .................................... ACCTCACTGATTTGAAACTTTTTATCAAAACTTCCATCGTA 414423 36 100.0 41 TTCCATCGTA .................................... GGACGTGTAATCCCCTCGTTAAAATACTTTTCTACTTCTTT 414500 36 100.0 CTACTTCTTT .................................... TCCGATAAATC ========== ====== ====== ====== ========== ==================================== 5 36 41 ATCCGAATATCACTACTCTCTGAAAGAGATAGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.89%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.10,-3.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [776,142] Score: 0.18/0.18 # # Final direction: R [0.18,0.37 Confidence: MEDIUM] >NC_016768 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1290204 36 100.0 38 TGTCCATAGA .................................... TTAAAACCGTGTTGCACTGCAACCCGGAATTCTTGCAC 1290278 36 100.0 41 ATTCTTGCAC .................................... CATAGAGGGTCGCCGGCTCTGGATCACGCTCCCCTAGTCGT 1290355 36 100.0 36 CCCTAGTCGT .................................... TTTTTGCCTCATGCTTGGGCGACAGCTTTTGACCAA 1290427 36 100.0 34 TTTTGACCAA .................................... TCGCAAGCGCCGTGCTTCCAGTGATCGCCTTCTA 1290497 36 100.0 39 TCGCCTTCTA .................................... AACACCTCAGTAGCACGTCATACGCCGACCAATCATCAG 1290572 36 100.0 35 CAATCATCAG .................................... TTTTCTGACCACTTGTGCGGGATTAGCGGGCTTAG 1290643 36 100.0 37 GCGGGCTTAG .................................... ACCAATGCGTCGTCATTTCCGGCTTCAATTTCAGCCT 1290716 36 100.0 38 ATTTCAGCCT .................................... CTGAGGAGAGCGAGTACTCGGGGCTGCCGTCTGCGCTG 1290790 36 100.0 37 GTCTGCGCTG .................................... GCGTGAAACCGCCCCCAGCCTCGCCGGGGCCGCCTAG 1290863 36 100.0 35 GGCCGCCTAG .................................... ACTCGGAATCCCATGTGCTGACAGCGGATTCGCAT 1290934 36 100.0 37 GGATTCGCAT .................................... CGGGCAGCGTTCGACACCCGCTCTAGTTGACTTCCGG 1291007 36 100.0 41 TGACTTCCGG .................................... CAGGTGAGCAACGGCGGCGGCAACCTGGCGGCCACGGGTCG 1291084 36 100.0 40 CCACGGGTCG .................................... ATGGGATATCTGCTGCCCGCCCGGGGAGATGCTGTCCGAG 1291160 36 100.0 36 GCTGTCCGAG .................................... TTCGTCGACCATCATTGCCATTCCCTCTCCCCACGT 1291232 36 100.0 41 CTCCCCACGT .................................... TTGCGCCAACCCTTTCGGTGTGATGCGGATGGTCGGCTCGG 1291309 36 100.0 29 GTCGGCTCGG .................................... CTTGAATAACGCGCAGTGAATTTCGCGGA 1291374 36 88.9 36 ATTTCGCGGA ----................................ ATTCGCACGAGTTCCCGTCAGCGTCGTAAATCGCCA 1291446 36 100.0 37 TAAATCGCCA .................................... CCGGCAACAATCGCGCCGGCCCGCGCGGATGACTCCG 1291519 36 100.0 36 GATGACTCCG .................................... CGCATGGACCCGGGCGAGCTGCAGATGGTCCGGGAG 1291591 36 100.0 36 GGTCCGGGAG .................................... TGGATTGCGCTAACTGGCTTGGCGCTGATCCTGGTG 1291663 36 100.0 41 GATCCTGGTG .................................... TCCACATCGATTTCCTTGACCTCGCCAGGAGAGAAGATCAC 1291740 36 97.2 AGAAGATCAC .........................A.......... TCGTCGACGA ========== ====== ====== ====== ========== ==================================== 22 36 37 GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [12,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.10,-6.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [55.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [50,74] Score: 0/0.18 # # Final direction: F [1.42,0 Confidence: HIGH] >NC_016768 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1293207 36 100.0 38 CACCCTGTCA .................................... CTTCAGCACCACCATCATCCGGCGCCTCAGCTCAGCAT 1293281 36 100.0 38 AGCTCAGCAT .................................... CCTTCGACGCCGGATTCGTGATCTCTTCCCGCGGATAG 1293355 36 100.0 36 CCGCGGATAG .................................... TGCCCCGGCGTTTAGCGATCACAACACCAACTAATG 1293427 36 100.0 36 CCAACTAATG .................................... CAGCGAAATACAGGCTCCACGACACGACCACAACGC 1293499 36 100.0 37 ACCACAACGC .................................... TCTTGACGATGCGGTTGCCCCGCGCCCTTTTCCAGCC 1293572 36 100.0 37 TTTTCCAGCC .................................... AGGTTCGCGTCAGACAGGTTCGCGTCGATCAAGTCCG 1293645 36 100.0 38 ATCAAGTCCG .................................... TTTATCACTCCCGACCAAATAGGTATCGGCGTGTTCAA 1293719 36 100.0 37 GCGTGTTCAA .................................... ATTTTGAGCGCGAACTCGTCCACAGTCCCCCTTTCAG 1293792 36 100.0 35 CCCCTTTCAG .................................... GCCCCGTGGATGGCGGATGCGTTGTGCGCGCAAGT 1293863 36 100.0 40 GCGCGCAAGT .................................... CCGACGATGGCCAGTAAATCGGCGTGGGTAACCGATCCGG 1293939 36 100.0 35 ACCGATCCGG .................................... CTGACGGCACGGAGCTTTCCGGCTTCTATCAGGTA 1294010 36 100.0 36 CTATCAGGTA .................................... CCTCATGGTGGGACATGGACGAGCGCGACTATCGGG 1294082 36 97.2 37 GACTATCGGG ......G............................. TGGACGCAGAATCGCACCGGGTGCGGGAGGTGCAGCA 1294155 36 100.0 40 AGGTGCAGCA .................................... GCATATCGCCCGCCACACCACAGCCACGCTACTGCTCCAT 1294231 36 97.2 40 ACTGCTCCAT ...C................................ ACACCGCCGATGACAGCTATGTCCGAGTGACATCCTCCCA 1294307 36 97.2 38 CATCCTCCCA ..................A................. TTGAACCGCCCTTCGCGCGGTGTTTCGGCCGTGCCCGA 1294381 36 100.0 CCGTGCCCGA .................................... TACGACGACT ========== ====== ====== ====== ========== ==================================== 17 36 37 GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [12,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.10,-6.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [33.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [99,150] Score: 0/0.18 # # Final direction: F [1.15,0.27 Confidence: MEDIUM] >NC_016771 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================== ====== 1577783 26 100.0 37 NNNNNNNNNN .A..........A.C........... AGTAACTCCAGTAGAGCCAGTGTTGCCGGTAGCTCCG 1577846 26 100.0 28 NNNNNNNNNN .......................... AGTGTCGCCGGTAGCTCCAGTATCGCCA 1577900 26 100.0 28 NNNNNNNNNN .......................... AGTGTCGCCGGTAGCTCCAGTGATACCA 1577954 26 100.0 19 NNNNNNNNNN .......................... AGTGTTGCCGGTAGCTCCG 1577999 26 100.0 28 NNNNNNNNNN .......................... GGTGTTACCAATAGCTCCAGTGTTGCCA 1578053 26 100.0 19 NNNNNNNNNN .......................... AGTGTCGCCGGTAGATCCA 1578098 26 100.0 1 NNNNNNNNNN ....AG..A...C.A..G........ NNNNNNNNNN ========== ====== ====== ====== ========== ========================== 7 26 26 GTAGGTCCGGTGTTGCCAGTAGGTCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.00,-3.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [3-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [36.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [938,821] Score: 0/0.18 # # Final direction: R [0.41,1.01 Confidence: MEDIUM] >NC_016779 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 1382727 20 100.0 34 NNNNNNNNNN ..T.....C..C.....G.. AGTAGCACCAGCAGGTCCTTGAACACCTTGAGGT 1382781 20 100.0 34 NNNNNNNNNN ..TTG...C..C.....G.. AGTAGCACCAGCAGGTCCTTGAACACCTTGAGGT 1382835 20 100.0 34 NNNNNNNNNN ..TTG...C..C.....G.. AGTAGCACCAGCAGGTCCTTGAACACCTTGAGGT 1382889 20 100.0 34 NNNNNNNNNN ..TTG...C..C.....G.. AGTAGCACCAGCAGGTCCTTGAACACCTTGAGGT 1382943 20 100.0 34 NNNNNNNNNN ..TTG...C..C........ AGTAGCACCAGCAGGTCCTTGAACGCCTTGAGGT 1382997 20 100.0 34 NNNNNNNNNN ..TTG...A..T.....G.. AGTAGCACCCGCCGGTCCTTGAACGCCTTGAGCC 1383051 20 100.0 43 NNNNNNNNNN ..TTG...C..C........ AGCAGGTCCTTGAACGCCTTGAGGTCCTTGAGCCCCCGTAGCA 1383114 20 100.0 25 NNNNNNNNNN .................... AGCAGGTCCTTGAGCACCTTGAGCA 1383159 20 100.0 25 NNNNNNNNNN .................... CGCTGGCCCTTGAGCACCTTGCGCA 1383204 20 100.0 34 NNNNNNNNNN .................... TGCCGGTCCTTGAATACCCTGAGGCCCTTGAGGT 1383258 20 100.0 34 NNNNNNNNNN .................... CGCCGGTCCTTGAATACCTTGAGGTCCTTGAGCA 1383312 20 100.0 34 NNNNNNNNNN ..T................. CGCCGGTCCTTGAACGCCTTGAGGTCCTTGAGCC 1383366 20 100.0 34 NNNNNNNNNN ..C.....A........... CGCCGGTCCTTGAACGCCTTGAGGTCCTTGAGCC 1383420 20 100.0 34 NNNNNNNNNN ..C.....A..T.....G.. AGTAGCACCCGCCGGTCCTTGAGCACCCGTAGCA 1383474 20 100.0 43 NNNNNNNNNN ..T.....A..C.CC.GT.. TTGAACGCCTTGAGGTCCTTGAGCCCCCGTAGCACCTGTAGCG 1383537 20 100.0 25 NNNNNNNNNN ........A....C..GT.. TTGAGCACCTTGAGCCCCCGTAGCG 1383582 20 100.0 61 NNNNNNNNNN ........A..T.C..GT.. TTGAATACCTTGAGGTCCTTGAGGTCCAGTAGCACCCGCTGGCCCTTGAGCACCTTGCGCA 1383663 20 100.0 34 NNNNNNNNNN .................... TGCCGGTCCTTGAATACCCTGAGGCCCTTGAGGT 1383717 20 100.0 34 NNNNNNNNNN .................... AGTAGCACCCGCTGGTCCTTGAATACCCTGAGGC 1383771 20 100.0 25 NNNNNNNNNN .................... CGCTGGTCCTTGAATACCTTGAGGT 1383816 20 100.0 34 NNNNNNNNNN ..TTG..GT........... TTGAACACCTGCTGGTCCTTGAGCACCTTGAGGT 1383870 20 100.0 52 NNNNNNNNNN ..TTG..GT........... TTGCGCACCCGCTGGTCCTTGAGGCCCAGTAGCACCAGTAGCACCCGCCGGC 1383942 20 100.0 1 NNNNNNNNNN ..TTG..GC........G.. NNNNNNNNNN ========== ====== ====== ====== ========== ==================== 23 20 35 CCAGTAGCGCCAGTAGCACC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [20-22] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [50.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [609,719] Score: 0/0.18 # # Final direction: F [1.05,0 Confidence: HIGH] >NC_016776 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================================== ====== 4711762 47 100.0 30 AACAAACTGT ............................................... CTATATCTTGATAATCTATACAGCTTATAG 4711839 47 100.0 30 CAGCTTATAG ............................................... TCTTGAAGTTTTCTTGTTGCCTGAACAATG 4711916 47 100.0 30 CTGAACAATG ............................................... TTCCAGGCTGGAAAGGGCTATGTCGATGGT 4711993 47 100.0 30 TGTCGATGGT ............................................... AAGTTTGTAACTACCAACATTAAGAAGTTA 4712070 47 100.0 30 TAAGAAGTTA ............................................... TTCCTCGTAAGACTGCCATACAGCAAACCC 4712147 47 100.0 29 CAGCAAACCC ............................................... TGTTGATTCTCTTTGCCGAACTTTCTCTT 4712223 47 100.0 30 ACTTTCTCTT ............................................... GAAGCGGGCGAGGCTTTGACGTATGGAGGC 4712300 47 100.0 29 GTATGGAGGC ............................................... CGCCAAGCAAGTTTAACTTCAGCGAATGA 4712376 47 100.0 30 CAGCGAATGA ............................................... TATTCCCACAGGAACGTATGCAATTGATAT 4712453 47 100.0 29 CAATTGATAT ............................................... GATGGTGTTTACGAGTGTGATGTATTGGA 4712529 47 100.0 29 ATGTATTGGA ............................................... TGGCGCAAGTATGCAATTTGAAGCCTCGT 4712605 47 100.0 30 GAAGCCTCGT ............................................... AGTATTCGATGTAAATAATGGCATGACTGA 4712682 47 100.0 30 GCATGACTGA ............................................... CTCTTTCAGTTTCTCGAAGTCAGAAGCTAT 4712759 47 100.0 30 CAGAAGCTAT ............................................... AGAAGTACACGCATATCCCAGTTCGATAGT 4712836 47 100.0 30 GTTCGATAGT ............................................... TTTGACACCCGGACAATTCCCGGTGCAGAG 4712913 47 100.0 30 CGGTGCAGAG ............................................... GTTACAGACCTTACATTTGAAAAGGCTGTC 4712990 47 100.0 30 AAAGGCTGTC ............................................... CCAGGTTATCCGGCTTGCCTTTCACGTGGA 4713067 47 100.0 30 TTCACGTGGA ............................................... ACGCTTCGACACGCCTATTTGCGTCAAACC 4713144 47 100.0 30 GCGTCAAACC ............................................... TTCCTCGTATGTTTGCCAAACAGCAAACCC 4713221 47 100.0 30 CAGCAAACCC ............................................... ATTACCTCCGATTTTAGCAAGGTTAACTGA 4713298 47 100.0 30 GGTTAACTGA ............................................... TTATCTGAATAACTTGCTAAAGAAAACAGT 4713375 47 100.0 30 AGAAAACAGT ............................................... TCGTATGAAAGACTTGTTTTATCTCTTAAT 4713452 47 100.0 29 ATCTCTTAAT ............................................... AAGACCATCGATAAGTTTACCAGCATTGT 4713528 47 100.0 30 CCAGCATTGT ............................................... CGTATCTGAATCACCAAATCGCCAACTCTT 4713605 47 100.0 29 GCCAACTCTT ............................................... TTTTGAAGCAGGAGAAGTAACAAGAACAA 4713681 47 100.0 30 ACAAGAACAA ............................................... CTTACCTGTACGATAACCAACATCGTTAGC 4713758 47 100.0 30 CATCGTTAGC ............................................... GTTTGATTTGTCCTATGCGCCATTGGAGGA 4713835 47 100.0 30 CATTGGAGGA ............................................... AACTTCTGCAAAAAACACTTCACCCTCTTT 4713912 47 100.0 CACCCTCTTT ............................................... AGATTTTACA ========== ====== ====== ====== ========== =============================================== 29 47 29 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.96%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [874,446] Score: 0/0.18 # # Final direction: R [0,0.64 Confidence: HIGH] >NC_016782 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2249694 29 100.0 32 TACAGTTAGT ............................. GGACGGTACGCAAATACTTACTGCCTTAATGA 2249755 29 100.0 32 GCCTTAATGA ............................. CGCCCTATCGTATGCGCGCTTCGCGGCCATGT 2249816 29 100.0 32 GCGGCCATGT ............................. GAAACCGAAACCCGACTTGAAAGAGGCGAAGA 2249877 29 100.0 32 GAGGCGAAGA ............................. ATCCGCTCATCTAGGGTTACGCGGGTGGGCAG 2249938 29 100.0 GGGTGGGCAG ............................. GGCAGGCAATC ========== ====== ====== ====== ========== ============================= 5 29 32 GTCTTCTCCGCACACGCGGAGGTATTTCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-10.50,-10.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [51.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [20,27] Score: 0/0.18 # # Final direction: R [0.27,0.37 Confidence: LOW] >NC_016782 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 39599 36 100.0 28 NNNNNNNNNN .................................... GCGTCGATGATGTCTTTTTCGATGGTGG 39663 36 100.0 28 NNNNNNNNNN .................................... AGGCAGGCAGGAAAGACCGACGCGGTAG 39727 36 100.0 27 NNNNNNNNNN .................................... GTCAAGGCCATCGCAAAAAGCAGGGTC 39790 36 100.0 28 NNNNNNNNNN .................................... GCTTCGTGGCGCGACCACCGCGGATCAC 39854 36 100.0 28 NNNNNNNNNN .................................... TTAAACTAGACACCAACACCTCAACCCG 39918 36 100.0 28 NNNNNNNNNN .................................... TTACAGCAGGCATGTACGTGGAAGAGGA 39982 36 100.0 28 NNNNNNNNNN .................................... GACGCAATCTCAGCATCAAGTTGCTCTG 40046 36 100.0 28 NNNNNNNNNN .................................... ATAGGATCAACGCCCGTACCAGCGCGGT 40110 36 100.0 27 NNNNNNNNNN ..................GAGA.CTGA.C...AGCG GCAGTTTCGCCGCTGTTCTTATCAGCC 40173 36 100.0 28 NNNNNNNNNN .................................... AATGTTGTATCGTCAAATTCCAAGATCG 40237 36 100.0 28 NNNNNNNNNN .................................... CGGCATCGAACGTTTTTCTTCGGTGCCG 40301 36 100.0 28 NNNNNNNNNN ..........................C......... GGTGGGGTGGGAGTTGCATGCGGATGGT 40365 36 100.0 28 NNNNNNNNNN ..........................C......... GTCTCGCGAGCAAAGTTACCGGCGGCGT 40429 36 100.0 28 NNNNNNNNNN .................................... TCATGGACTGGCTAGTGCGTCAGGGTGT 40493 36 100.0 28 NNNNNNNNNN ..........................C......... CATGCTGACTCCTGCCATCCTCAATCTG 40557 36 100.0 27 NNNNNNNNNN .................................... CCGCACCAGCGGGGATGAACCGTAGGA 40620 36 100.0 1 NNNNNNNNNN .....T..............G...TGAGGGTG.CTG NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 17 36 27 GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.60,-0.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [52,91] Score: 0/0.18 # # Final direction: F [0.78,0 Confidence: HIGH] >NC_016783 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 39263 28 100.0 33 NNNNNNNNNN ............................ GGTACGGCTGTCCCATGTGCGGTTGCTTTTGGC 39324 28 100.0 33 NNNNNNNNNN ............................ TGGGTTGGGGTGCACAACAACGAGGGAGAATCA 39385 28 100.0 33 NNNNNNNNNN ............................ CAAATTTCCACGCCTCTGGCCCCTCACCTGGGC 39446 28 100.0 32 NNNNNNNNNN ............................ CTAACCCAAAAACCATCCTCTTCGCCCAACAC 39506 28 100.0 33 NNNNNNNNNN ............................ CTGCTGCACTTCGGATTTGCTGGCCATATCAGC 39567 28 100.0 33 NNNNNNNNNN ............................ CTGACCAAGCCCGATGCGCTCACCGATCCAGAC 39628 28 100.0 33 NNNNNNNNNN ............................ CGCAAACAGGCCCGTGAAGCCGCCCGCGCTGTC 39689 28 100.0 33 NNNNNNNNNN ............................ CTAGTTGCTGAAGCACGAGCGGAAAATAAAACA 39750 28 100.0 33 NNNNNNNNNN ............................ CGCTGTCCCGAAGATAGAGGTGGTTTCGCAAAT 39811 28 100.0 33 NNNNNNNNNN ............................ GCAAAAACACAGTGCTTAGCTTTCGTCACGTAC 39872 28 100.0 33 NNNNNNNNNN ............................ GGATGGTGTAATCAATGCCCGCATAGGTCCCGT 39933 28 100.0 33 NNNNNNNNNN ............................ CGCCCACAGGACCAGCAGTGAGGTCGACCCGTA 39994 28 100.0 33 NNNNNNNNNN ............................ CATTGAGTGGGAAGAAGCCCCAGCAAACTTTGA 40055 28 100.0 33 NNNNNNNNNN ............................ CCTTGCCCGCGCCGCGGCGCGGGTTGCTCAAAA 40116 28 100.0 33 NNNNNNNNNN .................G.......... GTTGTTAACGGATCCACGAGACACACCCAGTAT 40177 28 100.0 33 NNNNNNNNNN .................G.......... GTCATAATCAGCACTGTCAATCCTCATGTATTG 40238 28 100.0 1 NNNNNNNNNN ...........GTC...G.......... NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 17 28 32 GTTTTCCCCGCACTAGCAGGGATGAGCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.40,-11.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [238,229] Score: 0/0.18 # # Final direction: R [0.68,0.74 Confidence: LOW] >NC_016786 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2250293 29 100.0 32 TACAGTTAGT ............................. GGACGGTACGCAAATACTTACTGCCTTAATGA 2250354 29 100.0 32 GCCTTAATGA ............................. CGCCCTATCGTATGCGCGCTTCGCGGCCATGT 2250415 29 100.0 32 GCGGCCATGT ............................. GAAACCGAAACCCGACTTGAAAGAGGCGAAGA 2250476 29 100.0 32 GAGGCGAAGA ............................. ATCCGCTCATCTAGGGTTACGCGGGTGGGCAG 2250537 29 100.0 GGGTGGGCAG ............................. GGCAGGCAATC ========== ====== ====== ====== ========== ============================= 5 29 32 GTCTTCTCCGCACACGCGGAGGTATTTCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-10.50,-10.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [51.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [20,27] Score: 0/0.18 # # Final direction: R [0.27,0.37 Confidence: LOW] >NC_016785 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 39026 28 100.0 33 NNNNNNNNNN ............................ GCCACCAATCAGCCCTACGAATCGGCAAACACA 39087 28 100.0 33 NNNNNNNNNN ............................ CTCGGAGGAGCGGGCACCGACGTTACGGAGCTT 39148 28 100.0 33 NNNNNNNNNN ............................ CTTAAAATCGGCTCGCTATTTCTCCGGGTACGA 39209 28 100.0 33 NNNNNNNNNN ............................ GATTGATAAGACAGCGCTAGACCTGCCTGCACC 39270 28 100.0 33 NNNNNNNNNN ............................ CAAGCAGAAGAGCGCGACGGCAATGTGGTTCCC 39331 28 100.0 33 NNNNNNNNNN ............................ GCGTGTTTGATGGAGTGCAGTTCTGGGAATTAG 39392 28 100.0 33 NNNNNNNNNN ............................ CCCGCACCAATCGTTTGTGGATCGGTATCCAAC 39453 28 100.0 33 NNNNNNNNNN ............................ GCACCTGTATAAGTCATTATTTATTTCCCTTTC 39514 28 100.0 33 NNNNNNNNNN ............................ CATCGGCCGGTAGTGGGTCGCCTTCCGCGCCCC 39575 28 100.0 33 NNNNNNNNNN ......................G..... CCAAACCCATTCCCACCAGAATTACGCTCATTC 39636 28 100.0 32 NNNNNNNNNN ............................ GACGACCGTGGGAACCGCGAGGATAAATAGCA 39696 28 100.0 32 NNNNNNNNNN .G...T...................... GACGACCGTGGGAACCGCGAGGATAAATAGCA 39756 28 100.0 1 NNNNNNNNNN .G...T...................... NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 13 28 32 GTTTTCCCCGCACCAGCGGGGATGAGCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [238,229] Score: 0/0.18 # # Final direction: R [0.68,0.74 Confidence: LOW] >NC_016786 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 39596 36 100.0 28 NNNNNNNNNN .................................... GCGTCGATGATGTCTTTTTCGATGGTGG 39660 36 100.0 28 NNNNNNNNNN .................................... AGGCAGGCAGGAAAGACCGACGCGGTAG 39724 36 100.0 28 NNNNNNNNNN .................................... GTCAAGGCCATCGCAAAAAAGCAGGGTC 39788 36 100.0 28 NNNNNNNNNN .................................... GCTTCGTGGCGCGACCACCGCGGATCAC 39852 36 100.0 28 NNNNNNNNNN .................................... TTAAACTAGACACCAACACCTCAACCCG 39916 36 100.0 28 NNNNNNNNNN .................................... TTACAGCAGGCATGTACGTGGAAGAGGA 39980 36 100.0 28 NNNNNNNNNN .................................... GACGCAATCTCAGCATCAAGTTGCTCTG 40044 36 100.0 28 NNNNNNNNNN .................................... ATAGGATCAACGCCCGTACCAGCGCGGT 40108 36 100.0 28 NNNNNNNNNN .................................... GGCAGTTTCGCCGCTGTTCTTATCAGCC 40172 36 100.0 28 NNNNNNNNNN .................................... AATGTTGTATCGTCAAATTCCAAGATCG 40236 36 100.0 28 NNNNNNNNNN .................................... CGGCGTCGAACGTTTTTCTTCGGTGCCG 40300 36 100.0 28 NNNNNNNNNN ..........................C......... GGTGGGGTGGGAGTTGCATGCGGATGGT 40364 36 100.0 28 NNNNNNNNNN ..........................C......... GTCTCGCGAGCAAAGTTACCGGCGGCGT 40428 36 100.0 28 NNNNNNNNNN .................................... TCATGGACTGGCTAGTGCGTCAGGGTGT 40492 36 100.0 28 NNNNNNNNNN ..........................C......... CATGCTGACTCCTGCCATCCTCAATCTG 40556 36 100.0 27 NNNNNNNNNN .................................... CCGCACCAGCGGGGATGAACCGTAGGA 40619 36 100.0 1 NNNNNNNNNN .....T..............G...TGAGGGTG.CTG NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 17 36 27 GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.60,-0.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [52,91] Score: 0/0.18 # # Final direction: F [0.78,0 Confidence: HIGH] >NC_016787 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 42133 28 100.0 33 CTTGATAAGA ............................ GAAGATTGACCGTCTATCCGAGGCTGTACAAAA 42194 28 100.0 33 CTGTACAAAA ............................ GTGCTTGTAGGCGGGTGACATCGCCGCGAAACG 42255 28 100.0 33 CCGCGAAACG ............................ GCACCCGCAAACTTTGACCAGACCGGCACCCTC 42316 28 100.0 33 CGGCACCCTC ............................ CGGGATTAAATCTAGGCGACTTTGTGCAGGTGG 42377 28 100.0 33 GTGCAGGTGG ............................ CATTGGCTTAACTCTCAACCTATGGAGTTCCTG 42438 28 100.0 34 GGAGTTCCTG ............................ CATTGGCTTAACTCTCAACCTATGGAGTTCCTGG 42500 28 92.9 33 GAGTTCCTGG T....T...................... CGCCGCGTTTCCAACGACCAATCACCAGCCGCT 42561 28 100.0 33 ACCAGCCGCT ............................ GAATGCCGGAAAAGAAGCCGATTTTGTTTACAC 42622 28 100.0 33 TTGTTTACAC ............................ CAGGGCATTGGAGCTATGCGCTCCATCGGCGCC 42683 28 100.0 33 CATCGGCGCC ............................ CATGACGGATGAGCAGTACCAAGCCGCTACTGC 42744 28 100.0 32 CCGCTACTGC ............................ CGACACGGGCTATGACACCCTCTGGGACACAG 42804 28 100.0 33 TGGGACACAG ............................ AGCTTCGGAGAGTCCGCAAAATCATGAGTAATA 42865 28 100.0 33 ATGAGTAATA ............................ CCTGAAGTGCACCGCATGCCCCGTCGCTCACCT 42926 28 100.0 33 TCGCTCACCT ............................ ACACCCTCGGTGGTAGTGGGTTCCCCACAGCAC 42987 28 100.0 33 CCCACAGCAC ............................ CACCCTCACGGCGGTGACGGGTGCGACTGAGAA 43048 28 100.0 33 CGACTGAGAA ............................ GCAGCAGATCATGCTATCCATGCTGCGTGACCT 43109 28 100.0 33 TGCGTGACCT ............................ CGATGACCGCGGCCTTGTGCAGGTCAAGATTAG 43170 28 100.0 33 TCAAGATTAG ............................ GCATTCGAGGCTGCCGCCTAAGCCCCCAGCATG 43231 28 100.0 33 CCCCAGCATG ............................ GCACACCGAAACCGCTTATTTATCGGGTAAGAA 43292 28 100.0 33 CGGGTAAGAA ............................ CACGGGATTTGCGCGCCGTTCAGGAGCTTCTAG 43353 28 96.4 33 GAGCTTCTAG .....T...................... CCCGCTGCGATTCGACCCCGCTGCCTTGCTTGC 43414 28 100.0 33 CCTTGCTTGC ............................ CCAGTTTTCACACCCCGAGTGTTCCACCGAGGT 43475 28 100.0 33 CCACCGAGGT ............................ TCATCCCGCAGGGTGAGGGAATCAAGCGAGGAA 43536 28 100.0 33 AAGCGAGGAA ............................ GCTGAGCTGGATGCCGTGGAGGGCATCCAGGAG 43597 28 100.0 33 CATCCAGGAG ............................ CCGCCTTGGGATAGTTTGATGGTGGGGCCACGA 43658 28 100.0 33 GGGGCCACGA ............................ CTTTCCGCAGGCCGTTACGTTCCACGGCGATAA 43719 28 100.0 33 ACGGCGATAA ............................ GAATTTGTGGGCGCGGCGTTTCGTGAGGCTCCG 43780 28 100.0 33 TGAGGCTCCG ............................ CCACCACGCCGCACAGGTCGCTGGCTGTATGCG 43841 28 100.0 33 GCTGTATGCG ............................ GCTTCTGATCTTGCGGCGCTACGCCTACGGGTG 43902 28 100.0 33 CCTACGGGTG ............................ CCCGCGAGTCTATGTCAAAAGCAAAATTGATGC 43963 28 100.0 33 AAATTGATGC ............................ CCGGCAATTACAAATGTGTTAGTTTTTCCAGCT 44024 28 100.0 33 TTTTCCAGCT ............................ GTATGAAACCTTTGCAGACCTGTTCACGACGCA 44085 28 100.0 33 TCACGACGCA ............................ CCAGCAACCCGTCCCCAGATCGACCGCTGTCGT 44146 28 100.0 33 CCGCTGTCGT ............................ GAAAACCAATACTCCTACAGCTGGAACGACCAA 44207 28 100.0 34 GAACGACCAA ............................ GACCACGGGGGATAGTGCCTCAGCTGCGAGTACT 44269 28 75.0 41 TGCGAGTACT .....................------- GATGAGCCGCGTCTAAATCCGATCCAATTCTTGTGCTTTCC 44338 28 75.0 41 TGTGCTTTCC .....................------- GATGAGCCGTGTGACGCCGGTAAAAATGCCGATGGCGATAC 44407 28 100.0 33 ATGGCGATAC ............................ CGACAATACCGAAGGGGTTTAATAACATCGTTG 44468 28 100.0 33 AACATCGTTG ............................ CAAGACGCCCCACATCATCTGTTTTTCCGAGGC 44529 28 100.0 33 TTTCCGAGGC ............................ CATTGTGCACAATTCTTGAACTAATGGAGGAAT 44590 28 100.0 33 ATGGAGGAAT ............................ GAAAACCAATACTCCTACAGCTGGAACGACCAA 44651 28 92.9 33 GAACGACCAA .............T.............T GTTGTTAACGGATCCACGAGACACACCCAGTAT 44712 28 96.4 CACCCAGTAT .............T.............. CAGGGACTTT ========== ====== ====== ====== ========== ============================ 43 28 33 GTTTTCCCCGCACCAGCGGGGATGAGCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [238,215] Score: 0/0.18 # # Final direction: R [0.68,0.74 Confidence: LOW] >NC_016788 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 39252 28 100.0 33 NNNNNNNNNN ............................ CGACGCTGTGACAGCGTTCACCTTATTGGTGAT 39313 28 100.0 33 NNNNNNNNNN ............................ CCGAGGCGCGGGGCTAATCCCCCAAGGCGGCGA 39374 28 100.0 33 NNNNNNNNNN ............................ CCCTATAGTGCTTGACAATATCGCTATCGACTG 39435 28 100.0 33 NNNNNNNNNN ............................ AGCTTCGGAGAGTCCGCAAAATCATGAGTAATA 39496 28 100.0 33 NNNNNNNNNN ............................ CCTGAAGTGCACCGCATGCCCCGTCGCTCACCT 39557 28 100.0 33 NNNNNNNNNN ............................ ACACCCTCGGTGGTAGTGGGTTCCCCACAGCAC 39618 28 100.0 33 NNNNNNNNNN ............................ CACCCTCACGGCGGTGACGGGTGCGACTGAGAA 39679 28 100.0 33 NNNNNNNNNN ............................ TATTGAATACGCCGCTCAGTGAGCGTGATCGTG 39740 28 100.0 34 NNNNNNNNNN ............................ CGCCCATTCGATGTCATCCCAGTGTGAGAGTATG 39802 28 100.0 33 NNNNNNNNNN T........................... CGATGACCGCGGCCTTGTGCAGGTCAAGATTAG 39863 28 100.0 33 NNNNNNNNNN ............................ GCATTCGAGGCTGCCGCCTAAGCCCCCAGCATG 39924 28 100.0 33 NNNNNNNNNN ............................ GCACACCGAAACCGCTTATTTATCGGGTAAGAA 39985 28 100.0 33 NNNNNNNNNN ............................ CACGGGATTTGCGCGCCGTTCAGGAGCTTCTAG 40046 28 100.0 33 NNNNNNNNNN .............T.............T GTTGTTAACGGATCCACGAGACACACCCAGTAT 40107 28 100.0 33 NNNNNNNNNN .............T.............. GTCATAATCAGCACTGTCAATCCTCATGTATTG 40168 28 100.0 1 NNNNNNNNNN ...........GT............... NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 16 28 33 GTTTTCCCCGCACCAGCGGGGATGAGCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [238,229] Score: 0/0.18 # # Final direction: R [0.68,0.74 Confidence: LOW] >NC_016789 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 31841 28 100.0 33 NNNNNNNNNN ............................ CGCCCCGGTCATCCGTAAGCACCTCAAAGACGC 31902 28 100.0 33 NNNNNNNNNN ............................ CTGAAATCTGAGGTTGCGGCGCTGAAATCGCAG 31963 28 100.0 33 NNNNNNNNNN ............................ GCGATTGAAGCTGAGCGGCGGTGCCGCCCGCGT 32024 28 100.0 33 NNNNNNNNNN ............................ TGCCAAATTCCAACAAAAATATACCTGGATCGC 32085 28 100.0 33 NNNNNNNNNN ............................ CCGGAGTCCTTTCCCCATACGACCTCGGCGGCT 32146 28 100.0 32 NNNNNNNNNN ............................ TAAATTGGGTGCGGTCGAGCATTTTTCCGTGC 32206 28 100.0 33 NNNNNNNNNN ............................ TTTCGCTGGGATCGATTCGGCGACCTTCCACGA 32267 28 100.0 33 NNNNNNNNNN ............................ CCCCGGCATCATCGACAAAGATACTGGCCGCGA 32328 28 100.0 33 NNNNNNNNNN ............................ CCGCTAAAGCCGATCTCCGCGACTGGGCTATGA 32389 28 100.0 33 NNNNNNNNNN .................G.......... CGTCGAGCCGACCAATTCGCCGCCCAAATACTC 32450 28 100.0 33 NNNNNNNNNN .................G.......... CTCTGGTATAAAACCAGCCCCAGTTAGTGCAGT 32511 28 100.0 33 NNNNNNNNNN .................G.......... GTTCTGGCATTCGACGATACAACATTGTGCACA 32572 28 100.0 33 NNNNNNNNNN .................G.......... GTTCTGGCATTCGACGATACAACATTGTGCACA 32633 28 100.0 33 NNNNNNNNNN .................G....G..... CTACGAGAGCATTAAGGGGGGCTATTTCTTTAC 32694 28 100.0 33 NNNNNNNNNN .................G.......... CGAACTCGAGGACATGGAGGCCACGCGATGAAA 32755 28 100.0 33 NNNNNNNNNN .................G.......... CGCCGGTAGGGTATGCGACCGCCGCGCAGGTCA 32816 28 100.0 33 NNNNNNNNNN .................G.......... GTGGGGTTGATTTGATTATACCGCATGGTGCGT 32877 28 100.0 33 NNNNNNNNNN .................G.......... GTCATAATCAGCACTGTCAATCCTCATGTATTG 32938 28 100.0 1 NNNNNNNNNN ...........GTC...G.......... NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 19 28 32 GTTTTCCCCGCACTAGCAGGGATGAGCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.40,-11.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [238,229] Score: 0/0.18 # # Final direction: R [0.68,0.74 Confidence: LOW] >NC_016791 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1450296 32 100.0 36 NNNNNNNNNN ................................ CGTAGTTGCTTGAAGGTATGAACAGTTTTACTTTGA 1450364 32 100.0 34 NNNNNNNNNN ................................ TGACATAATGCGAGACATTAGAGACGAACTTGGA 1450430 32 100.0 33 NNNNNNNNNN ................................ CATCTCATCCTCCGATTTAGCAAACATTAGCCC 1450495 32 100.0 35 NNNNNNNNNN ................................ ACCTGTGAAGAATAGTGCCAATATGCCTGTAACAA 1450562 32 100.0 33 NNNNNNNNNN ................................ AGAAATTATGTAAGCGGTATTGGACACCCCAGA 1450627 32 100.0 34 NNNNNNNNNN ................................ CAGAACGTATAACAGTTCCATCATCATATATACT 1450693 32 100.0 35 NNNNNNNNNN ................................ CACTTACTACTTTTGCAATTGTACTCATATGTAAA 1450760 32 100.0 35 NNNNNNNNNN ................................ CAGTTATAACTTACAACTGACAACATAACAACAAT 1450827 32 100.0 35 NNNNNNNNNN ................................ CTCAATTAATTCAGCCATTTACACTCCCTCCCCTG 1450894 32 100.0 35 NNNNNNNNNN ................................ TGTACATTTATACCTATATACCTTTTTAAAAAAAA 1450961 32 100.0 34 NNNNNNNNNN ................................ GTCATTTGTAGCGCCTTTTGCAATTTGGCTTTTA 1451027 32 100.0 34 NNNNNNNNNN ................................ AAATACTTGCGCATTACCCTGGATCACACCCACA 1451093 32 100.0 35 NNNNNNNNNN ................................ TCGCCTTTTGACTGTTTTAGATAGCTTTGCAATAC 1451160 32 100.0 35 NNNNNNNNNN .................G.............. ATCTCTATGGATCCTGAAGACTTTGAGTATTATCT 1451227 32 100.0 33 NNNNNNNNNN ................................ AAACTGAACTCTGAATCTCTAGCTCTGGCCAAA 1451292 32 100.0 34 NNNNNNNNNN ................................ AAGTTGTCGGAGTGTTTGTTATAGCAATGCTTGC 1451358 32 100.0 35 NNNNNNNNNN ................................ TTAACTTCGATAATTAGCAGGTTATCGTTATCATC 1451425 32 100.0 33 NNNNNNNNNN ..A............................. TTTACTATAAATAGCTACATAATGATAATTATT 1451490 32 100.0 34 NNNNNNNNNN ......T......................... CCTCATCAACAAACGCTTGTGCTGCATCAAATAA 1451556 32 100.0 35 NNNNNNNNNN ................................ ACCATAACCCCAATATGTTGATATTTAATCAAATA 1451623 32 100.0 1 NNNNNNNNNN .........T...C.................. NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 21 32 34 GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [6,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.70,-3.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [78.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [173,536] Score: 0.18/0.18 # # Final direction: F [5.55,0.55 Confidence: HIGH] >NC_016790 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 39331 36 100.0 29 NNNNNNNNNN .................................... GTCGTACGCGAGAACCAAATCTGGGTAGG 39396 36 100.0 28 NNNNNNNNNN .................................... CCAGTATGAGTGCCAAGCGCCTTGCCTA 39460 36 100.0 29 NNNNNNNNNN .................................TAG CGGCCTCGCAGATCATGACAAGGCGCTCA 39525 36 100.0 28 NNNNNNNNNN .................................... GACTTTGCCATTACGCGACGTTACAGTT 39589 36 100.0 28 NNNNNNNNNN .................................... CCTCACCCACCTGCACAAAGTCGCCTAG 39653 36 100.0 28 NNNNNNNNNN .................................... GTGCGCTCAAAGTCGATTGCGGCGGCCA 39717 36 100.0 27 NNNNNNNNNN .................................... ACACCGGCGGGTGAGTTACGCCGGCCA 39780 36 100.0 27 NNNNNNNNNN .................................... CCGCACCAGCGGGGATGAACCGTAGGA 39843 36 100.0 1 NNNNNNNNNN .....T..............G...TGAGGGTG.CTG NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 9 36 28 GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.60,-0.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [3-13] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [52,91] Score: 0/0.18 # # Final direction: F [0.78,0 Confidence: HIGH] >NC_016810 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3099641 29 100.0 33 GCGCCTTATT ............................. GCACCTCGAAACGGTTTTAAAACACTACCGTTT 3099703 29 100.0 32 ACTACCGTTT ............................. GGTAATTTCTCATCTAACAGCCTGTACGCCTC 3099764 29 96.6 32 TGTACGCCTC A............................ GAATCTAATGCAACAGATGAATAAACACGTAA 3099825 29 100.0 32 AAACACGTAA ............................. TCTTTATCGTCAATGCGAAATTTTCCGCGACG 3099886 29 100.0 32 TTCCGCGACG ............................. TCCCATTCACCAACAACAATATCGCCCTGCAA 3099947 29 100.0 32 CGCCCTGCAA ............................. ACTTCCTTCAGTCTTAACGATAATCCGCAACG 3100008 29 100.0 33 ATCCGCAACG ............................. GCAAAATAGCGATGAGCTGGCTACGCCCACTGG 3100070 29 100.0 32 CGCCCACTGG ............................. CAGCACGAAAAATTATTTACTGTCGTTGCTCA 3100131 29 100.0 TCGTTGCTCA ............................. ACTAAAACTA ========== ====== ====== ====== ========== ============================= 9 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [36.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [485,98] Score: 0.18/0.18 # # Final direction: R [0.18,1.92 Confidence: HIGH] >NC_016810 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3099233 29 100.0 32 GAACGCCCCT ............................. GCGAAATAGTGGGGAAAAACCCCTGGTTAACC 3099294 29 96.6 32 CTGGTTAACC .......................A..... TAGGCCTTGATACCATCGCTCGCACCTCGTCA 3099355 29 100.0 32 CACCTCGTCA ............................. GTTTATTACTGCTTAGTTAATTAATGGGTTGC 3099416 29 100.0 32 AATGGGTTGC ............................. AGGCGAATAATCTCTAATAGTCTCAATTCGTT 3099477 29 100.0 TCAATTCGTT ............................. TAAATCTGGC ========== ====== ====== ====== ========== ============================= 5 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [77,752] Score: 0.18/0.18 # # Final direction: R [0,1.83 Confidence: HIGH] >NC_016799 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 39133 36 100.0 28 NNNNNNNNNN .................................... CCCTCGGTCGTCTTGGGGCTACTGGGCT 39197 36 100.0 28 NNNNNNNNNN .................................... TTGACAGCGCTTCGGATATCTCCCTGTC 39261 36 100.0 28 NNNNNNNNNN .................................... ATGTCTTTGATGGCGATGTCGTAGGGTG 39325 36 100.0 28 NNNNNNNNNN .................................... TGCAGTAATCGCCGCCCCGCTTGTCGCG 39389 36 100.0 28 NNNNNNNNNN .................................... CCACCGATACCATTAATGGGCTTGCTGG 39453 36 100.0 28 NNNNNNNNNN .................................... GATGAGCATGTACGCCGCGTGGGTGGGC 39517 36 100.0 28 NNNNNNNNNN .................................... CTGCTTGTGGTGCCGAGTTTCCTAGCAA 39581 36 100.0 28 NNNNNNNNNN .................................... AGAGTGCTGCTTCTTCCACGTCACGATC 39645 36 100.0 28 NNNNNNNNNN .................................... ATCAGGTTTACTTTTCCTTGCGCCTCGA 39709 36 100.0 28 NNNNNNNNNN .................................... TCCAAAAAGGTGGACTATGGCATGCCGC 39773 36 100.0 27 NNNNNNNNNN .................................... AAGATCGCCGGCATTGCAGCGCAAGCC 39836 36 100.0 28 NNNNNNNNNN .................................... CCTAGGCTCCGAATTTATCGCCCGTTCC 39900 36 100.0 28 NNNNNNNNNN .................................... TGTCATCTGTGGATTCATGCGAATGATC 39964 36 100.0 28 NNNNNNNNNN .................................... AAGGCCTTGGTGGTGTCCTTGGTGGTAT 40028 36 100.0 28 NNNNNNNNNN .................................... TTGGCGATGACCCATTCACCGGCCTGCT 40092 36 100.0 28 NNNNNNNNNN .................................... GAGGGTGTCATCGCCCGTGTTGTTGTAA 40156 36 100.0 28 NNNNNNNNNN .................................... AGGAAACGGATACCTATGCGCGGCTTTT 40220 36 100.0 28 NNNNNNNNNN .................................... CCGTAGTGGTTGAGGATGTATTCGGTGA 40284 36 100.0 28 NNNNNNNNNN .................................... TGCCACCCGATGCTCTGCGACTCCCAGC 40348 36 100.0 28 NNNNNNNNNN .................................... CTTTCATGCATACCTTGTGCGTACTATC 40412 36 100.0 28 NNNNNNNNNN .................................... TGTCTGCTAGTAGTCCTGCGTCTGCGAT 40476 36 100.0 28 NNNNNNNNNN .................................... CGGACAAAATTGCTGCGAAATTCACGAT 40540 36 100.0 28 NNNNNNNNNN .................................... TCTCCTGCAGCCGGTTCGACGTCCCGAA 40604 36 100.0 28 NNNNNNNNNN .................................... TCCCGCATGGAGGAGTTCGCTGGGGATA 40668 36 100.0 28 NNNNNNNNNN .................................... TCCTGCAGCACCATAGCAGTGTGGCCAT 40732 36 100.0 28 NNNNNNNNNN .................................... ACTGGGCCAGTGAACACATAACCAGTTG 40796 36 100.0 28 NNNNNNNNNN .................................... AATTCATGCTGTTGTGCATGGGAATTTT 40860 36 100.0 28 NNNNNNNNNN .................................... AATTCATGCTGTTGTGCATGGGAATTTT 40924 36 100.0 27 NNNNNNNNNN .................................... CCGCACCAGCGGGGATGAACCGTAGGA 40987 36 100.0 1 NNNNNNNNNN .....T..............G...TGAGGGTG.CTG NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 30 36 27 GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.60,-0.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [52,91] Score: 0/0.18 # # Final direction: F [0.78,0 Confidence: HIGH] >NC_016801 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 40845 36 100.0 28 NNNNNNNNNN .................................... ATGATACGCGGGCTGATGCGCGGCATGC 40909 36 100.0 28 NNNNNNNNNN .................................... CTGCCTGGTATAGGTCAGCGGCGAATCG 40973 36 100.0 28 NNNNNNNNNN .................................... TTATTAGCTCATGGAACGCATCGAACTC 41037 36 100.0 28 NNNNNNNNNN .................................... CCCCGCACCGTGGGGCGCTGGGGAGGTC 41101 36 100.0 28 NNNNNNNNNN .................................... GGTGGCGTTAACTGGGGTGACTGCTCCG 41165 36 100.0 28 NNNNNNNNNN .................................... TGCGCTATATCAGCCCACCACGGCTGAG 41229 36 100.0 27 NNNNNNNNNN .................................... CCGCACCAGCGGGGATGAACCGTAGGA 41292 36 100.0 1 NNNNNNNNNN .....T..............G...TGAGGGTG.CTG NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 8 36 27 GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.60,-0.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [52,261] Score: 0.18/0.18 # # Final direction: F [0.78,0.18 Confidence: MEDIUM] >NC_016810 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3116291 29 100.0 32 NNNNNNNNNN AC.GC.....TT.T............... ATCTTCATATTGCGTGACGCTGCCGATGAACG 3116352 29 100.0 32 NNNNNNNNNN ............................. TCTTTATCAGCTAACCATTTCCAGAACTCGTC 3116413 29 100.0 32 NNNNNNNNNN ...........T................. TATAATATGAATTAATTTTTGCGCATAACCTG 3116474 29 100.0 33 NNNNNNNNNN ............................. GCAGCTTAGCGACGAAATTAAAACCGAACTCAC 3116536 29 100.0 32 NNNNNNNNNN ............................. TGCCAGTGACTACAGAAGCGTCTCTATCGGGG 3116597 29 100.0 32 NNNNNNNNNN ............................. ACCGATAAACAACCGCATAGCCTCTTTCGTTT 3116658 29 100.0 32 NNNNNNNNNN ..A........T................. TGCTCAATAACGTCGTAAATAGCGTAAGCTGG 3116719 29 100.0 32 NNNNNNNNNN ............................. TATTTCGCCTTCGGCACTGACGTCACCGTCAA 3116780 29 100.0 32 NNNNNNNNNN ............................. GTCGCGTTCGTTGCCGGTATAGACCAGCGTCA 3116841 29 100.0 32 NNNNNNNNNN ............................. ATCGAATCGAAACCCCAGCCACAGAAATAATT 3116902 29 100.0 32 NNNNNNNNNN ............................. ATCGAATCGAAACCCCAGCCACAGAAATAATT 3116963 29 100.0 32 NNNNNNNNNN ............................. GCTCATGTCAAACGCCATCAGCGTTCCGGCAT 3117024 29 100.0 32 NNNNNNNNNN ...............A............. AATCGCCAGCCTCGGAAATATTCCATCCTCCG 3117085 29 100.0 32 NNNNNNNNNN ............................. AGGAACTAAACAGCCTGACCGTTGAGGATCTG 3117146 29 100.0 32 NNNNNNNNNN ............................. ACCGGACAAATCTTTTTTTTCCTGTTCCTGTT 3117207 29 100.0 32 NNNNNNNNNN ............................. GGGCACTATGAACGGATCGGCGCTGATGCCGG 3117268 29 100.0 32 NNNNNNNNNN ............................. GGTAAAGCCACACCATTTTTTATTGACCTCGC 3117329 29 100.0 32 NNNNNNNNNN ............................. CTAGGAGGCGTAATGAATACTACGTATCAAAA 3117390 29 100.0 32 NNNNNNNNNN ............................. GTGGTGGCCTCAAATAAATTCGAGCGCTGGAG 3117451 29 100.0 32 NNNNNNNNNN ............................. TCGACGTGGACGAGGAGTTACTCAACCGCTGC 3117512 29 100.0 32 NNNNNNNNNN ............................. AGCGCCACATGGCCCACCGGCACCACCCGATC 3117573 29 100.0 32 NNNNNNNNNN ............................. AAATGACCAAATCAGAAATCTTCACCAAAGCC 3117634 29 100.0 32 NNNNNNNNNN ............................. GATGTAACTGATAGCGAAATATATTGGGATAA 3117695 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 24 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [61.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [99,298] Score: 0.18/0.18 # # Final direction: R [0,2.1 Confidence: HIGH] >NC_016818 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1961543 28 100.0 32 NNNNNNNNNN ............................ TTGGATAATCTCAGGGAACTTCTCCCAACATT 1961603 28 100.0 32 NNNNNNNNNN ............................ GTACTTAGGGTCTTGCACATCCTGATACCAAT 1961663 28 100.0 32 NNNNNNNNNN ............................ TAAGGCCACGTGGGAAGTTGCGGCAAACTCAT 1961723 28 100.0 32 NNNNNNNNNN ............................ AGTTACGACCACATCACACACAACACGCCCCG 1961783 28 100.0 32 NNNNNNNNNN ............................ ACCTTCCGTCCAAGAACTTAGGAAGTGTTCGA 1961843 28 100.0 32 NNNNNNNNNN ............................ AAACGGCGATGGCCTGTGTGGGCGGATAGAAA 1961903 28 100.0 32 NNNNNNNNNN ............................ TGGGAAACAGACACCAACAAGCTAATGAAGAA 1961963 28 100.0 32 NNNNNNNNNN ............................ TTTGACCAAGAATCGGCAGACTTTCTTACATC 1962023 28 100.0 32 NNNNNNNNNN ............................ GCCGAACATCCGCGCCTGATAATCTGCGTGTG 1962083 28 100.0 32 NNNNNNNNNN ............................ AATCTAAAAGAGTTCGGTTATCAGATTTTTAA 1962143 28 100.0 32 NNNNNNNNNN ............................ AAGCTCTCAGGAGATTTTGGGTCATCGATAAC 1962203 28 100.0 32 NNNNNNNNNN ............................ AAGCGGATCAAGGGCGCACCGGACATTAAACG 1962263 28 100.0 32 NNNNNNNNNN ............................ GCGCTTTATCAGATGGGTCAGGCGTTCAGTTC 1962323 28 100.0 32 NNNNNNNNNN ............................ GCGTGATGCCAACAGCTCTGCGCGAACGTCGG 1962383 28 100.0 32 NNNNNNNNNN ............................ TGAGCGTGGAAGAAGCCCGAAAAGTTAAGCAC 1962443 28 100.0 32 NNNNNNNNNN ............................ GAAAGCACCCGAACCAACGGGAAAGAAAACAT 1962503 28 100.0 32 NNNNNNNNNN ............................ AATCAACATTATTGTTAGCCCAATGATTCCTT 1962563 28 100.0 32 NNNNNNNNNN ............................ ATAACGCCATGACTAGGATTTCCAGCGCTTGT 1962623 28 100.0 32 NNNNNNNNNN ............................ GCTATATCTGTTGTCTCAGTCATAAGGCCTCC 1962683 28 100.0 1 NNNNNNNNNN ....................AAA.A... NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 20 28 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [208,192] Score: 0/0.18 # # Final direction: F [1.65,0 Confidence: HIGH] >NC_016818 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1956124 28 100.0 32 CAGGCTTGCC ............................ TGAATGGGTGAAAGAACCAGAATCAGCAGAAG 1956184 28 100.0 32 TCAGCAGAAG ............................ GCACAGGTTGGCATCGCGCAGGTTGGCACCGC 1956244 28 100.0 32 TTGGCACCGC ............................ GCCGCAAACTATCCACTTGTCATTAATCCATT 1956304 28 96.4 32 TTAATCCATT ....................T....... ATCATGCAGGAAGATCAGGGCCAGTTGTTCAC 1956364 28 100.0 32 AGTTGTTCAC ............................ GCAGAAAATTCAGCAGTTTGTCCGCTGCCTTT 1956424 28 100.0 32 CGCTGCCTTT ............................ AGAGCGTGAATTTGCTCGGCGGTGAGTTTTGA 1956484 28 100.0 32 TGAGTTTTGA ............................ AACACATTCAGCGCTCGCAAAGGCTCATTGCG 1956544 28 100.0 32 GCTCATTGCG ............................ TTAGAGCAGAAAGCGTAGAGCCCTCAACGCTG 1956604 28 100.0 32 CTCAACGCTG ............................ GGCAGGATGATGCAACAAAGGCTGCATTTTCC 1956664 28 100.0 32 TGCATTTTCC ............................ TCGGCTGGTAACCTTGGGGGTTTAGTCGGAAT 1956724 28 100.0 32 TAGTCGGAAT ............................ TTTGTGCGGATTGAAGCAGCAGAACGCCGGAA 1956784 28 100.0 32 AACGCCGGAA ............................ CACGGAAGCCGATCTGTATCCCGAAGAAATCA 1956844 28 100.0 32 GAAGAAATCA ............................ GGATGAACGGAGCGGCGCTGTGCGCGTGTTTC 1956904 28 100.0 32 CGCGTGTTTC ............................ TTGCCATGGCTCGATAGCTGTCAGCATAAGCC 1956964 28 100.0 32 AGCATAAGCC ............................ TCTTATTTTACTCGTTTAAATGCATAGGTTCC 1957024 28 100.0 CATAGGTTCC ............................ ACATACCGCA ========== ====== ====== ====== ========== ============================ 16 28 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [38.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [598,307] Score: 0/0.18 # # Final direction: F [1.24,0.68 Confidence: LOW] >NC_016802 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 41661 36 100.0 28 NNNNNNNNNN .................................... GAGCTATGAACGTGCCCGCGGCGTTTAT 41725 36 100.0 28 NNNNNNNNNN .................................... CTCGCTGAATCGTTGACCGTGCTACCGA 41789 36 100.0 28 NNNNNNNNNN .................................... ACAGTGCGTTTCGTCCGATGGTCGCCCT 41853 36 100.0 28 NNNNNNNNNN .................................... GAGCTATGAACGTGCCCGCGGCGTTTAT 41917 36 100.0 28 NNNNNNNNNN .................................... CGTTCACCAGGGGTGTGGCTTTGCGGCG 41981 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 6 36 28 GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.60,-0.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [63.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [52,901] Score: 0.18/0.18 # # Final direction: F [0.64,0.18 Confidence: MEDIUM] >NC_016804 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3051998 36 100.0 35 AGTCGTCGTA .................................... ACTTGCGCGCACAACGCATCCGCCATCCACGGGGC 3052069 36 100.0 37 TCCACGGGGC .................................... CTGAAAGGGGGACTGTGGACGAGTTCGCGCTCAAAAT 3052142 36 100.0 38 CGCTCAAAAT .................................... GCGAGAATAAGATTGTCAGGCTGGTGCTGCGTTTCCGT 3052216 36 100.0 36 GCGTTTCCGT .................................... CCGCTGGGGGCAGGCCCAGGTGGGACGGTTCCTCGC 3052288 36 100.0 36 GGTTCCTCGC .................................... CCGCTGGGGGCAGGCCCAGGTGGGACGGTTCCTCGC 3052360 36 100.0 43 GGTTCCTCGC .................................... TTCGGGAGCATGCCGCAGCTGCGGATGTGGTGCTGGATTTCGA 3052439 36 97.2 41 TGGATTTCGA ....A............................... ACGTTGGAAGCGTTTCGAGCGTACGGACTTTCCGGATGCAG 3052516 36 100.0 38 CCGGATGCAG .................................... AGGCGCTTCGACGGTGTGGGCGAGGTGACTTCGCAAAG 3052590 36 100.0 37 CTTCGCAAAG .................................... TGCGTCAAGTGCGGCACCGCCGTCATGTCGGTGTCGA 3052663 36 100.0 37 TCGGTGTCGA .................................... TGCGTCAAGTGCGGCACCGCCGTCATGTCGGTGTCGA 3052736 36 100.0 38 TCGGTGTCGA .................................... TTGAACACGCCGATACCTATTTGGTCGGGAGTGATAAA 3052810 36 100.0 35 GAGTGATAAA .................................... TGACAGGGTGCGGTGGTCGCTGATCGGCTCCCCGA 3052881 36 100.0 37 GGCTCCCCGA .................................... CGGACTTGATCGACGCGAACCTGTCTGACGCGAACCT 3052954 36 100.0 37 ACGCGAACCT .................................... GGCTGGAAAAGGGCGCGGGGCAACCGCATCGTCAAGA 3053027 36 100.0 36 ATCGTCAAGA .................................... GCGTTGTGGTCGTGTCGTGGAGCCTGTATTTCGCTG 3053099 36 100.0 36 TATTTCGCTG .................................... CATTAGTTGGTGTTGTGATCGCTAAACGCCGGGGCA 3053171 36 100.0 38 CGCCGGGGCA .................................... CTATCCGCGGGAAGAGATCACGAATCCGGCGTCGAAGG 3053245 36 100.0 38 GCGTCGAAGG .................................... ATGCTGAGCTGAGGCGCCGGATGATGGTGGTGCTGAAG 3053319 36 100.0 GGTGCTGAAG .................................... TGACAGGGTGCGGTGGTCGCTGATCGGCTCCCCGA ========== ====== ====== ====== ========== ==================================== 19 36 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [38.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [150,99] Score: 0/0.18 # # Final direction: R [0.27,0.74 Confidence: MEDIUM] >NC_016822 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3175628 29 100.0 32 NNNNNNNNNN G...G.TCTA....A..G........TT. TAAGTGATATCCATCATCGCATCCAGTGCGCC 3175689 29 100.0 32 NNNNNNNNNN ...........................T. TTACTGCTTGGTATGCGGAATCACACCCTGAA 3175750 29 100.0 32 NNNNNNNNNN ............................. CCTGACGCGCCGCAGTATTTATCTGCTCTGGC 3175811 29 100.0 32 NNNNNNNNNN ............................. GGGTGCGTGTGGCTGCCAGTGCCGGAGAACGG 3175872 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 5 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [22,98] Score: 0.18/0.18 # # Final direction: R [0,2.1 Confidence: HIGH] >NC_016831 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =========================== ====== 2954932 27 100.0 34 NNNNNNNNNN .GC.....TT.T............... GGCTACACGCAAAAATTCCAGTCGTTGGCGCACG 2954993 27 100.0 34 NNNNNNNNNN ........................... GTGGCCGGGTTGAGTACCGATCGCATTTTTTTCG 2955054 27 100.0 34 NNNNNNNNNN ........................... TTCCCCTCCGGATGGCGGGGATGCTCTTATGGCG 2955115 27 100.0 34 NNNNNNNNNN ........................... ATCAAACATGGAAACCCCTTTAATGAGAGCAACG 2955176 27 100.0 34 NNNNNNNNNN ........................... AATAATCGGCAATTTGTCCTGGACAGGCACGGCA 2955237 27 100.0 34 NNNNNNNNNN ........................... GAATCTGGAGGCCAACAGCGCGGCGAAATCCTCA 2955298 27 100.0 1 NNNNNNNNNN ........................... NNNNNNNNNN ========== ====== ====== ====== ========== =========================== 7 27 34 GTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [216,121] Score: 0/0.18 # # Final direction: R [0,1.65 Confidence: HIGH] >NC_016832 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2900677 28 96.4 33 GGTGAAACGT -........................... GGACAGCAACCCGTGTCGGATATCAGACAGATC 2900738 28 100.0 33 CAGACAGATC ............................ ACGCGAATCGCCAATCGCCGCCGCGTGAATTGC 2900799 28 100.0 33 CGTGAATTGC ............................ CCACGATGTATGCCGACCGTGATTTTTACCGCC 2900860 28 100.0 33 TTTTACCGCC ............................ AGATACGCCTTTACGTCGCCCTCTTTGGCGCGC 2900921 28 100.0 33 TTTGGCGCGC ............................ ATTAAAAAAGATTAATGTTGGTTATAGTTTTAC 2900982 28 96.4 59 ATAGTTTTAC ................T........... TAAAACACCGGTTGCGCAACCTCCGCGGGGATCGGTTTATCCCCGCTGGCGCGGGGATC 2901069 28 100.0 CGCGGGGATC ............................ TCTAAATCTAC ========== ====== ====== ====== ========== ============================ 7 28 37 GGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [18,85] Score: 0.18/0.18 # # Final direction: R [0,2.1 Confidence: HIGH] >NC_016854 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3069659 29 100.0 32 GAACGCCCCT ............................. GCGAAATAGTGGGGAAAAACCCCTGGTTAACC 3069720 29 96.6 32 CTGGTTAACC .......................A..... TAGGCCTTGATACCATCGCTCGCACCTCGTCA 3069781 29 100.0 32 CACCTCGTCA ............................. GTTTATTACTGCTTAGTTAATTAATGGGTTGC 3069842 29 100.0 32 AATGGGTTGC ............................. AGGCGAATAATCTCTAATAGTCTCAATTCGTT 3069903 29 100.0 32 TCAATTCGTT ............................. TAAATCTGGCGTCGAGACATTCGAAATAGTGC 3069964 29 100.0 32 GAAATAGTGC ............................. TCTTTTGATTTTGCTGCGATGTTATAACCAGA 3070025 29 100.0 32 TATAACCAGA ............................. AATCACTGCGGGGGTATTTAGCGGAAACGGCT 3070086 29 100.0 28 GGAAACGGCT ............................. GATCGAGTAACGTGCGCTGGAACGCGTC 3070143 29 48.3 32 GGAACGCGTC ---------------.............. AATTAAAGCCGAGGGTGGTACCGCGCCTTATT 3070204 29 100.0 33 GCGCCTTATT ............................. GCACCTCGAAACGGTTTTAAAACACTACCGTTT 3070266 29 100.0 32 ACTACCGTTT ............................. TGGACCGATGGGGCCAACATCGCCGAACGTGG 3070327 29 100.0 32 CCGAACGTGG ............................. GTTACGTTCGGTAAATGGAAAGCGGCGAATAT 3070388 29 100.0 32 CGGCGAATAT ............................. CCAGAAAGTGCCGGTAGTGCCTGATGAACGAC 3070449 29 100.0 32 GATGAACGAC ............................. CGCGCCCACTTCCGTAAAATACAGATAATCCA 3070510 29 100.0 32 AGATAATCCA ............................. GGCAGCGGGCGAGGCAAACACATTCGGGGCGT 3070571 29 100.0 32 TTCGGGGCGT ............................. GGTAATTTCTCATCTAACAGCCTGTACGCCTC 3070632 29 96.6 32 TGTACGCCTC A............................ GAATCTAATGCAACAGATGAATAAACACGTAA 3070693 29 100.0 32 AAACACGTAA ............................. TCTTTATCGTCAATGCGAAATTTTCCGCGACG 3070754 29 100.0 32 TTCCGCGACG ............................. TCCCATTCACCAACAACAATATCGCCCTGCAA 3070815 29 100.0 32 CGCCCTGCAA ............................. ACTTCCTTCAGTCTTAACGATAATCCGCAACG 3070876 29 100.0 33 ATCCGCAACG ............................. GCAAAATAGCGATGAGCTGGCTACGCCCACTGG 3070938 29 100.0 32 CGCCCACTGG ............................. CAGCACGAAAAATTATTTACTGTCGTTGCTCA 3070999 29 100.0 TCGTTGCTCA ............................. ACTAAAACTA ========== ====== ====== ====== ========== ============================= 23 29 31 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [40.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [77,83] Score: 0/0.18 # # Final direction: R [0,1.51 Confidence: HIGH] >NC_016854 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3087205 29 100.0 32 CCGATGAACG ............................. TCTTTATCAGCTAACCATTTCCAGAACTCGTC 3087266 29 96.6 32 AGAACTCGTC ...........T................. TATAATATGAATTAATTTTTGCGCATAACCTG 3087327 29 100.0 32 GCATAACCTG ............................. TGCCCGTTCTGCCTCTTCGCACTCTCGATCAA 3087388 29 100.0 32 TCTCGATCAA ............................. TGCGTAATGGGCTACCTGAACTTCACATATCC 3087449 29 93.1 32 TCACATATCC ...............A............T ATTAAGCGCGCAAAGTTTGGGTTAATTGGACA 3087510 29 100.0 32 TAATTGGACA ............................. CGTATTCGTCACACAGCCCCGTCCAGAAATGA 3087571 29 96.6 32 CCAGAAATGA ..................A.......... TAACGAACTGAATAAAATGTCAGAAAGTGACG 3087632 29 96.6 33 GAAAGTGACG ...C......................... GCAGCTTAGCGACGAAATTAAAACCGAACTCAC 3087694 29 100.0 32 CCGAACTCAC ............................. GGTAAAGCCACACCATTTTTTATTGACCTCGC 3087755 29 100.0 32 TTGACCTCGC ............................. CTAGGAGGCGTAATGAATACTACGTATCAAAA 3087816 29 100.0 32 CGTATCAAAA ............................. GTGGTGGCCTCAAATAAATTCGAGCGCTGGAG 3087877 29 100.0 32 AGCGCTGGAG ............................. TCGACGTGGACGAGGAGTTACTCAACCGCTGC 3087938 29 100.0 32 CAACCGCTGC ............................. AGCGCCACATGGCCCACCGGCACCACCCGATC 3087999 29 100.0 32 CCACCCGATC ............................. AAATGACCAAATCAGAAATCTTCACCAAAGCC 3088060 29 100.0 32 CACCAAAGCC ............................. TAATGGCCACAGTAAGTCAAACGGTTCTGGAA 3088121 29 100.0 32 GGTTCTGGAA ............................. GAGTCCGGGGGTTATATAGTTATTTAATGAGC 3088182 29 100.0 32 TTTAATGAGC ............................. GATGTAACTGATAGCGAAATATATTGGGATAA 3088243 29 100.0 ATTGGGATAA ............................. ACTAAACGGA ========== ====== ====== ====== ========== ============================= 18 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [160,298] Score: 0/0.18 # # Final direction: R [0,1.92 Confidence: HIGH] >NC_016804 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3054748 36 100.0 40 NNNNNNNNNN CA.G...GGG.GGT..A................... TCGCGGCGAGCACGTCTCACCCAGCAGGCGGTGAGGTTGG 3054824 36 100.0 39 NNNNNNNNNN .................................... ACGGACGAGCTGGACCGCATCAGCGATGCTGAGCTGAGG 3054899 36 100.0 37 NNNNNNNNNN .................................... TTGTCTCAATCGTGCCGTCTGCGGTGACACGCTCCAA 3054972 36 100.0 40 NNNNNNNNNN .................................... TCGACGATTGGGACATCGACATCGACGCGATCGTCGACGA 3055048 36 100.0 41 NNNNNNNNNN ..........T......................... GTGATCTTCTCTCCTGGCGAGGTCAAGGAAATCGATGTGGA 3055125 36 100.0 36 NNNNNNNNNN .................................... CACCAGGATCAGCGCCAAGCCAGTTAGCGCAATCCA 3055197 36 100.0 36 NNNNNNNNNN .................................... CTCCCGGACCATCTGCAGCTCGCCCGGGTCCATGCG 3055269 36 100.0 37 NNNNNNNNNN .................................... CGGAGTCATCCGCGCGGGCCGGCGCGATTGTTGCCGG 3055342 36 100.0 25 NNNNNNNNNN ................................TCCG CGAAATTCACTGCGCGTTATTCAAG 3055403 36 100.0 41 NNNNNNNNNN .................................... CCGAGCCGACCATCCGCATCACACCGAAAGGGTTGGCGCAA 3055480 36 100.0 36 NNNNNNNNNN .................................... ACGTGGGGAGAGGGAATGGCAATGATGGTCGACGAA 3055552 36 100.0 40 NNNNNNNNNN .................................... CTCGGACAGCATCTCCCCGGGCGGGCAGCAGATATCCCAT 3055628 36 100.0 41 NNNNNNNNNN .................................... CGACCCGTGGCCGCCAGGTTGCCGCCGCCGTTGCTCACCTG 3055705 36 100.0 37 NNNNNNNNNN .................................... CCGGAAGTCAACTAGAGCGGGTGTCGAACGCTGCCCG 3055778 36 100.0 37 NNNNNNNNNN .................................... CTAGGCGGCCCCGGCGAGGCTGGGGGCGGTTTCACGC 3055851 36 100.0 40 NNNNNNNNNN .................................... GCGGAGCTGCGGCGCCGGATGATGGCGTTGCTCAAGAGCA 3055927 36 100.0 39 NNNNNNNNNN .................................... TCAAAAACGGGGACGGCATGCTGCATGCCCTAACGTCGT 3056002 36 100.0 38 NNNNNNNNNN .................................... CAGCGCAGACGGCAGCCCCGAGTACTCGCTCTCCTCAG 3056076 36 100.0 37 NNNNNNNNNN .................................... AGGCTGAAATTGAAGCCGGAAATGACGACGCATTGGT 3056149 36 100.0 35 NNNNNNNNNN .................................... CTAAGCCCGCTAATCCCGCACAAGTGGTCAGAAAA 3056220 36 100.0 39 NNNNNNNNNN .................................... CTGATGATTGGTCGGCGTATGACGTGCTACTGAGGTGTT 3056295 36 100.0 38 NNNNNNNNNN .................................... ACCCCTGAGCCACGGCATGTGCACGGCTCCGTGTTCAA 3056369 36 100.0 39 NNNNNNNNNN .................................... TCGATGAATGATGCGCGCCAGCGGTAACGCGTGGGATGT 3056444 36 100.0 36 NNNNNNNNNN .................................... TCTGAAAATTCGTGGTCAACGAATTGTCGTCGAAAT 3056516 36 100.0 35 NNNNNNNNNN .................................... ACGGGCCGTGGGGCACTTACGGCGACGGCGCACAT 3056587 36 100.0 37 NNNNNNNNNN .................................... CCCCTAGCCACGCCTGCCGTGCCATGCCGCGCCGCGA 3056660 36 100.0 36 NNNNNNNNNN .................................... TTGGTCAAAAGCTGTCGCCCAAGCATGAGGCAAAAA 3056732 36 100.0 41 NNNNNNNNNN .................................... ACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTATG 3056809 36 100.0 38 NNNNNNNNNN .................................... GTGCAAGAATTCCGGGTTGCAGTGCAACACGGTTTTAA 3056883 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 30 36 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [36,50] Score: 0/0.18 # # Final direction: R [0,1.42 Confidence: HIGH] >NC_016856 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3096909 29 100.0 32 GAACGCCCCT ............................. GCGAAATAGTGGGGAAAAACCCCTGGTTAACC 3096970 29 96.6 32 CTGGTTAACC .......................A..... TAGGCCTTGATACCATCGCTCGCACCTCGTCA 3097031 29 100.0 32 CACCTCGTCA ............................. GTTTATTACTGCTTAGTTAATTAATGGGTTGC 3097092 29 100.0 32 AATGGGTTGC ............................. AGGCGAATAATCTCTAATAGTCTCAATTCGTT 3097153 29 100.0 32 TCAATTCGTT ............................. TAAATCTGGCGTCGAGACATTCGAAATAGTGC 3097214 29 100.0 32 GAAATAGTGC ............................. TCTTTTGATTTTGCTGCGATGTTATAACCAGA 3097275 29 100.0 32 TATAACCAGA ............................. TATCCACATATACCCGCAATCATATTCAAGAA 3097336 29 100.0 32 TATTCAAGAA ............................. AATCACTGCGGGGGTATTTAGCGGAAACGGCT 3097397 29 100.0 28 GGAAACGGCT ............................. GATCGAGTAACGTGCGCTGGAACGCGTC 3097454 29 48.3 32 GGAACGCGTC ---------------.............. AATTAAAGCCGAGGGTGGCACCGCGCCTTATT 3097515 29 100.0 33 GCGCCTTATT ............................. GCACCTCGAAACGGTTTTAAAACACTACCGTTT 3097577 29 100.0 32 ACTACCGTTT ............................. TGGACCGATGGGGCCAACATCGCCGAACGTGG 3097638 29 100.0 32 CCGAACGTGG ............................. GTTACGTTCGGTAAATGGAAAGCGGCGAATAT 3097699 29 100.0 32 CGGCGAATAT ............................. CCAGAAAGTGCCGGTAGTGCCTGATGAACGAC 3097760 29 100.0 32 GATGAACGAC ............................. CGCGCCCACTTCCGTAAAATACAGATAATCCA 3097821 29 100.0 32 AGATAATCCA ............................. GGCAGCGGGCGAGGCAAACACATTCGGGGCGT 3097882 29 100.0 32 TTCGGGGCGT ............................. GGTAATTTCTCATCTAACAGCCTGTACGCCTC 3097943 29 96.6 32 TGTACGCCTC A............................ GAATCTAATGCAACAGATGAATAAACACGTAA 3098004 29 100.0 32 AAACACGTAA ............................. TCTTTATCGTCAATGCGAAATTTTCCGCGACG 3098065 29 100.0 32 TTCCGCGACG ............................. TCCCATTCACCAACAACAATATCGCCCTGCAA 3098126 29 100.0 32 CGCCCTGCAA ............................. ACTTCCTTCAGTCTTAACGATAATCCGCAACG 3098187 29 100.0 33 ATCCGCAACG ............................. GCAAAATAGCGATGAGCTGGCTACGCCCACTGG 3098249 29 100.0 32 CGCCCACTGG ............................. CAGCACGAAAAATTATTTACTGTCGTTGCTCA 3098310 29 100.0 TCGTTGCTCA ............................. ACTAAAACTA ========== ====== ====== ====== ========== ============================= 24 29 31 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [40.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [77,83] Score: 0/0.18 # # Final direction: R [0,1.51 Confidence: HIGH] >NC_016856 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3114455 29 100.0 32 NNNNNNNNNN AC.GC.....TT.T............... ATCTTCATATTGCGTGACGCTGCCGATGAACG 3114516 29 100.0 32 NNNNNNNNNN ............................. TCTTTATCAGCTAACCATTTCCAGAACTCGTC 3114577 29 100.0 32 NNNNNNNNNN ...........T................. TATAATATGAATTAATTTTTGCGCATAACCTG 3114638 29 100.0 32 NNNNNNNNNN ............................. TGCCCGTTCTGCCTCTTCGCACTCTCGATCAA 3114699 29 100.0 32 NNNNNNNNNN ............................. TGCGTAATGGGCTACCTGAACTTCACATATCC 3114760 29 100.0 32 NNNNNNNNNN ...............A............T ATTAAGCGCGCAAAGTTTGGGTTAATTGGACA 3114821 29 100.0 32 NNNNNNNNNN ............................. CGTATTCGTCACACAGCCCCGTCCAGAAATGA 3114882 29 100.0 32 NNNNNNNNNN ..................A.......... TAACGAACTGAATAAAATGTCAGAAAGTGACG 3114943 29 100.0 33 NNNNNNNNNN ...C......................... GCAGCTTAGCGACGAAATTAAAACCGAACTCAC 3115005 29 100.0 32 NNNNNNNNNN ............................. TGCCAGTGACTACAGAAGCGTCTCTATCGGGG 3115066 29 100.0 32 NNNNNNNNNN ............................. ACCGATAAACAACCGCATAGCCTCTTTCGTTT 3115127 29 100.0 32 NNNNNNNNNN ..A........T................. TGCTCAATAACGTCGTAAATAGCGTAAGCTGG 3115188 29 100.0 32 NNNNNNNNNN ............................. TATTTCGCCTTCGGCACTGACGTCACCGTCAA 3115249 29 100.0 32 NNNNNNNNNN ............................. GTCGCGTTCGTTGCCGGTATAGACCAGCGTCA 3115310 29 100.0 32 NNNNNNNNNN ............................. ATCGAATCGAAACCCCAGCCACAGAAATAATT 3115371 29 100.0 32 NNNNNNNNNN ............................. ATCGAATCGAAACCCCAGCCACAGAAATAATT 3115432 29 100.0 32 NNNNNNNNNN ............................. GCTCATGTCAAACGCCATCAGCGTTCCGGCAT 3115493 29 100.0 32 NNNNNNNNNN ...............A............. AATCGCCAGCCTCGGAAATATTCCATCCTCCG 3115554 29 100.0 32 NNNNNNNNNN ............................. AGGAACTAAACAGCCTGACCGTTGAGGATCTG 3115615 29 100.0 32 NNNNNNNNNN ............................. ACCGGACAAATCTTTTTTTTCCTGTTCCTGTT 3115676 29 100.0 32 NNNNNNNNNN ............................. GGGCACTATGAACGGATCGGCGCTGATGCCGG 3115737 29 100.0 32 NNNNNNNNNN ............................. GGTAAAGCCACACCATTTTTTATTGACCTCGC 3115798 29 100.0 32 NNNNNNNNNN ............................. CTAGGAGGCGTAATGAATACTACGTATCAAAA 3115859 29 100.0 32 NNNNNNNNNN ............................. GTGGTGGCCTCAAATAAATTCGAGCGCTGGAG 3115920 29 100.0 32 NNNNNNNNNN ............................. GAAACGTAAACAGGGTAAGATACAACTCTGCA 3115981 29 100.0 32 NNNNNNNNNN ............................. TGTAAAGGGTGGTCTGGAAGGGGATCGGCAAA 3116042 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 27 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [61.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [99,298] Score: 0.18/0.18 # # Final direction: R [0,2.1 Confidence: HIGH] >NC_016857 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3099233 29 100.0 32 GAACGCCCCT ............................. GCGAAATAGTGGGGAAAAACCCCTGGTTAACC 3099294 29 96.6 32 CTGGTTAACC .......................A..... TAGGCCTTGATACCATCGCTCGCACCTCGTCA 3099355 29 100.0 32 CACCTCGTCA ............................. GTTTATTACTGCTTAGTTAATTAATGGGTTGC 3099416 29 100.0 32 AATGGGTTGC ............................. AGGCGAATAATCTCTAATAGTCTCAATTCGTT 3099477 29 100.0 TCAATTCGTT ............................. TAAATCTGGC ========== ====== ====== ====== ========== ============================= 5 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [77,544] Score: 0.18/0.18 # # Final direction: R [0,1.83 Confidence: HIGH] >NC_016857 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3099641 29 100.0 33 GCGCCTTATT ............................. GCACCTCGAAACGGTTTTAAAACACTACCGTTT 3099703 29 100.0 32 ACTACCGTTT ............................. GGTAATTTCTCATCTAACAGCCTGTACGCCTC 3099764 29 96.6 32 TGTACGCCTC A............................ GAATCTAATGCAACAGATGAATAAACACGTAA 3099825 29 100.0 32 AAACACGTAA ............................. TCTTTATCGTCAATGCGAAATTTTCCGCGACG 3099886 29 100.0 32 TTCCGCGACG ............................. TCCCATTCACCAACAACAATATCGCCCTGCAA 3099947 29 100.0 32 CGCCCTGCAA ............................. ACTTCCTTCAGTCTTAACGATAATCCGCAACG 3100008 29 100.0 33 ATCCGCAACG ............................. GCAAAATAGCGATGAGCTGGCTACGCCCACTGG 3100070 29 100.0 32 CGCCCACTGG ............................. CAGCACGAAAAATTATTTACTGTCGTTGCTCA 3100131 29 100.0 TCGTTGCTCA ............................. ACTAAAACTAT ========== ====== ====== ====== ========== ============================= 9 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [36.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [485,98] Score: 0.18/0.18 # # Final direction: R [0.18,1.92 Confidence: HIGH] >NC_016857 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3116291 29 100.0 32 NNNNNNNNNN AC.GC.....TT.T............... ATCTTCATATTGCGTGACGCTGCCGATGAACG 3116352 29 100.0 32 NNNNNNNNNN ............................. TCTTTATCAGCTAACCATTTCCAGAACTCGTC 3116413 29 100.0 32 NNNNNNNNNN ...........T................. TATAATATGAATTAATTTTTGCGCATAACCTG 3116474 29 100.0 33 NNNNNNNNNN ............................. GCAGCTTAGCGACGAAATTAAAACCGAACTCAC 3116536 29 100.0 32 NNNNNNNNNN ............................. TGCCAGTGACTACAGAAGCGTCTCTATCGGGG 3116597 29 100.0 32 NNNNNNNNNN ............................. ACCGATAAACAACCGCATAGCCTCTTTCGTTT 3116658 29 100.0 32 NNNNNNNNNN ..A........T................. TGCTCAATAACGTCGTAAATAGCGTAAGCTGG 3116719 29 100.0 32 NNNNNNNNNN ............................. TATTTCGCCTTCGGCACTGACGTCACCGTCAA 3116780 29 100.0 32 NNNNNNNNNN ............................. GTCGCGTTCGTTGCCGGTATAGACCAGCGTCA 3116841 29 100.0 32 NNNNNNNNNN ............................. ATCGAATCGAAACCCCAGCCACAGAAATAATT 3116902 29 100.0 32 NNNNNNNNNN ............................. ATCGAATCGAAACCCCAGCCACAGAAATAATT 3116963 29 100.0 32 NNNNNNNNNN ............................. GCTCATGTCAAACGCCATCAGCGTTCCGGCAT 3117024 29 100.0 32 NNNNNNNNNN ...............A............. AATCGCCAGCCTCGGAAATATTCCATCCTCCG 3117085 29 100.0 32 NNNNNNNNNN ............................. AGGAACTAAACAGCCTGACCGTTGAGGATCTG 3117146 29 100.0 32 NNNNNNNNNN ............................. ACCGGACAAATCTTTTTTTTCCTGTTCCTGTT 3117207 29 100.0 32 NNNNNNNNNN ............................. GGGCACTATGAACGGATCGGCGCTGATGCCGG 3117268 29 100.0 32 NNNNNNNNNN ............................. GGTAAAGCCACACCATTTTTTATTGACCTCGC 3117329 29 100.0 32 NNNNNNNNNN ............................. CTAGGAGGCGTAATGAATACTACGTATCAAAA 3117390 29 100.0 32 NNNNNNNNNN ............................. GTGGTGGCCTCAAATAAATTCGAGCGCTGGAG 3117451 29 100.0 32 NNNNNNNNNN ............................. TCGACGTGGACGAGGAGTTACTCAACCGCTGC 3117512 29 100.0 32 NNNNNNNNNN ............................. AGCGCCACATGGCCCACCGGCACCACCCGATC 3117573 29 100.0 32 NNNNNNNNNN ............................. AAATGACCAAATCAGAAATCTTCACCAAAGCC 3117634 29 100.0 32 NNNNNNNNNN ............................. GATGTAACTGATAGCGAAATATATTGGGATAA 3117695 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 24 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [61.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [99,298] Score: 0.18/0.18 # # Final direction: R [0,2.1 Confidence: HIGH] >NC_016860 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3100408 28 100.0 28 GAAACGGCTC ............................ GATCGAGTAACGTGCGCTGGAACGCGTC 3100464 28 50.0 33 GGAACGCGTC --------------.............. AATTAAAGCCGAGGGTGGCACCGCGCCTTATTC 3100525 28 100.0 34 CGCCTTATTC ............................ GCACCTCGAAACGGTTTTAAAACACTACCGTTTC 3100587 28 100.0 33 CTACCGTTTC ............................ TGGACCGATGGGGCCAACATCGCCGAACGTGGC 3100648 28 100.0 33 CGAACGTGGC ............................ GTTACGTTCGGTAAATGGAAAGCGGCGAATATC 3100709 28 100.0 33 GGCGAATATC ............................ CCAGAAAGTGCCGGTAGTGCCTGATGAACGACC 3100770 28 100.0 33 ATGAACGACC ............................ CGCGCCCACTTCCGTAAAATACAGATAATCCAC 3100831 28 100.0 33 GATAATCCAC ............................ GGTAATTTCTCATCTAACAGCCTGTACGCCTCA 3100892 28 100.0 33 GTACGCCTCA ............................ GAATCTAATGCAACAGATGAATAAACACGTAAC 3100953 28 100.0 33 AACACGTAAC ............................ TCTTTATCGTCAATGCGAAATTTTCCGCGACGC 3101014 28 100.0 33 TCCGCGACGC ............................ TCCCATTCACCAACAACAATATCGCCCTGCAAC 3101075 28 100.0 33 GCCCTGCAAC ............................ CGTTGCGTCAGGTTGATCCAGTGCGTCAGCGGC 3101136 28 100.0 33 CGTCAGCGGC ............................ ACTTCCTTCAGTCTTAACGATAATCCGCAACGC 3101197 28 100.0 33 TCCGCAACGC ............................ GAGGGGATAGGAGTTACGATCCAGCCTGGTTGC 3101258 28 100.0 33 GCCTGGTTGC ............................ GTGGTTGCAGACCAATCAGCCCGCCAGCGGTTC 3101319 28 100.0 33 CCAGCGGTTC ............................ CAGCACGAAAAATTATTTACTGTCGTTGCTCAC 3101380 28 100.0 CGTTGCTCAC ............................ ACTAAAACTA ========== ====== ====== ====== ========== ============================ 17 28 32 GGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [40.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [383,84] Score: 0.18/0.18 # # Final direction: R [0.18,1.92 Confidence: HIGH] >NC_016860 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 3100102 30 96.7 31 GAACGCCCCT .............................G CGAAATAGTGGGGAAAAACCCCTGGTTAACC 3100163 30 96.7 31 CTGGTTAACC .......................A...... AGGCCTTGATACCATCGCTCGCACCTCGTCA 3100224 30 100.0 31 CACCTCGTCA .............................. CTTTTGATTTTGCTGCGATGTTATAACCAGA 3100285 30 100.0 TATAACCAGA .............................. ATCCACATAT ========== ====== ====== ====== ========== ============================== 4 30 31 CGGTTTATCCCCGCTGGCGCGGGGAACACT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,6] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-14.20,-14.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [77,796] Score: 0.18/0.18 # # Final direction: R [0,2.1 Confidence: HIGH] >NC_016860 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3117525 29 100.0 32 NNNNNNNNNN AC.GC.....TT.T............... ATCTTCATATTGCGTGACGCTGCCGATGAACG 3117586 29 100.0 32 NNNNNNNNNN ............................. TCTTTATCAGCTAACCATTTCCAGAACTCGTC 3117647 29 100.0 32 NNNNNNNNNN ...........T................. TATAATATGAATTAATTTTTGCGCATAACCTG 3117708 29 100.0 32 NNNNNNNNNN ............................. TGCCCGTTCTGCCTCTTCGCACTCTCGATCAA 3117769 29 100.0 32 NNNNNNNNNN ............................. TGCGTAATGGGCTACCTGAACTTCACATATCC 3117830 29 100.0 32 NNNNNNNNNN ...............A............T ATTAAGCGCGCAAAGTTTGGGTTAATTGGACA 3117891 29 100.0 32 NNNNNNNNNN ............................. CGTATTCGTCACACAGCCCCGTCCAGAAATGA 3117952 29 100.0 32 NNNNNNNNNN ..................A.......... TAACGAACTGAATAAAATGTCAGAAAGTGACG 3118013 29 100.0 33 NNNNNNNNNN ...C......................... GCAGCTTAGCGACGAAATTAAAACCGAACTCAC 3118075 29 100.0 32 NNNNNNNNNN ............................. TGCCAGTGACTACAGAAGCGTCGCTATCGGGG 3118136 29 100.0 32 NNNNNNNNNN ............................. ACCGATAAACAACCGCATAGCCTCTTTCGTTT 3118197 29 100.0 32 NNNNNNNNNN ..A........T................. TGCTCAATAACGTCGTAAATAGCGTAAGCTGG 3118258 29 100.0 32 NNNNNNNNNN ............................. TATTTCGCCTTCGGCACTGACGTCACCGTCAA 3118319 29 100.0 32 NNNNNNNNNN ............................. GTCGCGTTCGTTGCCGGTATAGACCAGCGTCA 3118380 29 100.0 32 NNNNNNNNNN ............................. ATCGAATCGAAACCCCAGCCACAGAAATAATT 3118441 29 100.0 32 NNNNNNNNNN ............................. GCTCATGTCAAACGCCATCAGCGTTCCGGCAT 3118502 29 100.0 32 NNNNNNNNNN ...............A............. AATCGCCAGCCTCGGAAATATTCCATCCTCCG 3118563 29 100.0 32 NNNNNNNNNN ............................. AGGAACTAAACAGCCTGACCGTTGAGGATCTG 3118624 29 100.0 32 NNNNNNNNNN ............................. ACCGGACAAATCTTTTTTTTCCTGTTCCTGTT 3118685 29 100.0 32 NNNNNNNNNN ............................. GGGCACTATGAACGGATCGGCGCTGATGCCGG 3118746 29 100.0 32 NNNNNNNNNN ............................. GGTAAAGCCACACCATTTTTTATTGACCTCGC 3118807 29 100.0 32 NNNNNNNNNN ............................. GTGGTGGCCTCAAATAAATTCGAGCGCTGGAG 3118868 29 100.0 32 NNNNNNNNNN ............................. TCGACGTGGACGAGGAGTTACTCAACCGCTGC 3118929 29 100.0 32 NNNNNNNNNN ............................. AGCGCCACATGGCCCACCGGCACCACCCGATC 3118990 29 100.0 32 NNNNNNNNNN ............................. AAATGACCAAATCAGAAATCTTCACCAAAGCC 3119051 29 100.0 32 NNNNNNNNNN ............................. TAATGGCCACAGTAAGTCAAACGGTTCTGGAA 3119112 29 100.0 32 NNNNNNNNNN ............................. GAGTCCGGGGGTTATATAGTTATTTAATGAGC 3119173 29 100.0 32 NNNNNNNNNN ............................. TTGGGCGTCGGTTTTTTCAGGTTTAGGTCCGG 3119234 29 100.0 32 NNNNNNNNNN ............................. TCAACTGTCAGTTCGTCGTTAGCCAGTAATTC 3119295 29 100.0 32 NNNNNNNNNN ............................. CTGAAAACGCATGGAATCCGGTATAAACAGTC 3119356 29 100.0 32 NNNNNNNNNN ............................. GATGTAACTGATAGCGAAATATATTGGGATAA 3119417 29 100.0 32 NNNNNNNNNN ............................. GAAACGTAAACAGGGTAAGATACAACTCTGCA 3119478 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 33 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [61.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [99,298] Score: 0.18/0.18 # # Final direction: R [0,2.1 Confidence: HIGH] >NC_016863 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3062207 29 100.0 32 NNNNNNNNNN AC.GC.....TT.T............... ATCTTCATATTGCGTGACGCTGCCGATGAACG 3062268 29 100.0 32 NNNNNNNNNN ............................. TCTTTATCAGCTAACCATTTCCAGAACTCGTC 3062329 29 100.0 32 NNNNNNNNNN ...........T................. TATAATATGAATTAATTTTTGCGCATAACCTG 3062390 29 100.0 32 NNNNNNNNNN ............................. TGCCCGTTCTGCCTCTTCGCACTCTCGATCAA 3062451 29 100.0 32 NNNNNNNNNN ............................. TGCGTAATGGGCTACCTGAACTTCACATATCC 3062512 29 100.0 32 NNNNNNNNNN ...............A............T ATTAAGCGCGCAAAGTTTGGGTTAATTGGACA 3062573 29 100.0 32 NNNNNNNNNN ............................. CGTATTCGTCACACAGCCCCGTCCAGAAATGA 3062634 29 100.0 32 NNNNNNNNNN ..................A.......... TAACGAACTGAATAAAATGTCAGAAAGTGACG 3062695 29 100.0 33 NNNNNNNNNN ...C......................... GCAGCTTAGCGACGAAATTAAAACCGAACTCAC 3062757 29 100.0 32 NNNNNNNNNN ............................. TGCCAGTGACTACAGAAGCGTCTCTATCGGGG 3062818 29 100.0 32 NNNNNNNNNN ............................. ACCGATAAACAACCGCATAGCCTCTTTCGTTT 3062879 29 100.0 32 NNNNNNNNNN ..A........T................. TGCTCAATAACGTCGTAAATAGCGTAAGCTGG 3062940 29 100.0 32 NNNNNNNNNN ............................. TATTTCGCCTTCGGCACTGACGTCACCGTCAA 3063001 29 100.0 32 NNNNNNNNNN ............................. GCTCATGTCAAACGCCATCAGCGTTCCGGCAT 3063062 29 100.0 32 NNNNNNNNNN ...............A............. AATCGCCAGCCTCGGAAATATTCCATCCTCCG 3063123 29 100.0 32 NNNNNNNNNN ............................. AGGAACTAAACAGCCTGACCGTTGAGGATCTG 3063184 29 100.0 32 NNNNNNNNNN ............................. ACCGGACAAATCTTTTTTTTCCTGTTCCTGTT 3063245 29 100.0 32 NNNNNNNNNN ............................. GGGCACTATGAACGGATCGGCGCTGATGCCGG 3063306 29 100.0 32 NNNNNNNNNN ............................. GGTAAAGCCACACCATTTTTTATTGACCTCGC 3063367 29 100.0 32 NNNNNNNNNN ............................. CTAGGAGGCGTAATGAATACTACGTATCAAAA 3063428 29 100.0 32 NNNNNNNNNN ............................. GTGGTGGCCTCAAATAAATTCGAGCGCTGGAG 3063489 29 100.0 32 NNNNNNNNNN ............................. GAAACGTAAACAGGGTAAGATACAACTCTGCA 3063550 29 100.0 32 NNNNNNNNNN ............................. TGTAAAGGGTGGTCTGGAAGGGGATCGGCAAA 3063611 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 24 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [61.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [99,298] Score: 0.18/0.18 # # Final direction: R [0,2.1 Confidence: HIGH] >NC_016863 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3045272 28 100.0 28 GAAACGGCTC ............................ GATCGAGTAACGTGCGCTGGAACGCGTC 3045328 28 50.0 33 GGAACGCGTC --------------.............. AATTAAAGCCGAGGGTGGCACCGCGCCTTATTC 3045389 28 100.0 34 CGCCTTATTC ............................ GCACCTCGAAACGGTTTTAAAACACTACCGTTTC 3045451 28 100.0 33 CTACCGTTTC ............................ TGGACCGATGGGGCCAACATCGCCGAACGTGGC 3045512 28 100.0 33 CGAACGTGGC ............................ GTTACGTTCGGTAAATGGAAAGCGGCGAATATC 3045573 28 100.0 33 GGCGAATATC ............................ CCAGAAAGTGCCGGTAGTGCCTGATGAACGACC 3045634 28 100.0 33 ATGAACGACC ............................ GGTAATTTCTCATCTAACAGCCTGTACGCCTCA 3045695 28 100.0 33 GTACGCCTCA ............................ GAATCTAATGCAACAGATGAATAAACACGTAAC 3045756 28 100.0 33 AACACGTAAC ............................ TCTTTATCGTCAATGCGAAATTTTCCGCGACGC 3045817 28 100.0 33 TCCGCGACGC ............................ TCCCATTCACCAACAACAATATCGCCCTGCAAC 3045878 28 100.0 33 GCCCTGCAAC ............................ ACTTCCTTCAGTCTTAACGATAATCCGCAACGC 3045939 28 100.0 34 TCCGCAACGC ............................ GCAAAATAGCGATGAGCTGGCTACGCCCACTGGC 3046001 28 100.0 33 GCCCACTGGC ............................ CAGCACGAAAAATTATTTACTGTCGTTGCTCAC 3046062 28 100.0 CGTTGCTCAC ............................ ACTAAAACTA ========== ====== ====== ====== ========== ============================ 14 28 32 GGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [40.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [200,84] Score: 0.18/0.18 # # Final direction: R [0.18,1.92 Confidence: HIGH] >NC_016804 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3054824 36 100.0 39 GTGAGGTTGG .................................... ACGGACGAGCTGGACCGCATCAGCGATGCTGAGCTGAGG 3054899 36 100.0 37 TGAGCTGAGG .................................... TTGTCTCAATCGTGCCGTCTGCGGTGACACGCTCCAA 3054972 36 100.0 40 CACGCTCCAA .................................... TCGACGATTGGGACATCGACATCGACGCGATCGTCGACGA 3055048 36 97.2 41 TCGTCGACGA ..........T......................... GTGATCTTCTCTCCTGGCGAGGTCAAGGAAATCGATGTGGA 3055125 36 100.0 36 TCGATGTGGA .................................... CACCAGGATCAGCGCCAAGCCAGTTAGCGCAATCCA 3055197 36 100.0 36 GCGCAATCCA .................................... CTCCCGGACCATCTGCAGCTCGCCCGGGTCCATGCG 3055269 36 100.0 37 GGTCCATGCG .................................... CGGAGTCATCCGCGCGGGCCGGCGCGATTGTTGCCGG 3055342 36 88.9 29 TTGTTGCCGG ................................---- TCCGCGAAATTCACTGCGCGTTATTCAAG 3055407 36 100.0 41 GTTATTCAAG .................................... CCGAGCCGACCATCCGCATCACACCGAAAGGGTTGGCGCAA 3055484 36 100.0 36 GTTGGCGCAA .................................... ACGTGGGGAGAGGGAATGGCAATGATGGTCGACGAA 3055556 36 100.0 40 GGTCGACGAA .................................... CTCGGACAGCATCTCCCCGGGCGGGCAGCAGATATCCCAT 3055632 36 100.0 41 GATATCCCAT .................................... CGACCCGTGGCCGCCAGGTTGCCGCCGCCGTTGCTCACCTG 3055709 36 100.0 37 TGCTCACCTG .................................... CCGGAAGTCAACTAGAGCGGGTGTCGAACGCTGCCCG 3055782 36 100.0 37 ACGCTGCCCG .................................... CTAGGCGGCCCCGGCGAGGCTGGGGGCGGTTTCACGC 3055855 36 100.0 40 GGTTTCACGC .................................... GCGGAGCTGCGGCGCCGGATGATGGCGTTGCTCAAGAGCA 3055931 36 100.0 39 CTCAAGAGCA .................................... TCAAAAACGGGGACGGCATGCTGCATGCCCTAACGTCGT 3056006 36 100.0 38 CTAACGTCGT .................................... CAGCGCAGACGGCAGCCCCGAGTACTCGCTCTCCTCAG 3056080 36 100.0 37 CTCTCCTCAG .................................... AGGCTGAAATTGAAGCCGGAAATGACGACGCATTGGT 3056153 36 100.0 35 ACGCATTGGT .................................... CTAAGCCCGCTAATCCCGCACAAGTGGTCAGAAAA 3056224 36 100.0 39 GGTCAGAAAA .................................... CTGATGATTGGTCGGCGTATGACGTGCTACTGAGGTGTT 3056299 36 100.0 38 CTGAGGTGTT .................................... ACCCCTGAGCCACGGCATGTGCACGGCTCCGTGTTCAA 3056373 36 100.0 39 CCGTGTTCAA .................................... TCGATGAATGATGCGCGCCAGCGGTAACGCGTGGGATGT 3056448 36 100.0 36 CGTGGGATGT .................................... TCTGAAAATTCGTGGTCAACGAATTGTCGTCGAAAT 3056520 36 100.0 35 TCGTCGAAAT .................................... ACGGGCCGTGGGGCACTTACGGCGACGGCGCACAT 3056591 36 100.0 37 CGGCGCACAT .................................... CCCCTAGCCACGCCTGCCGTGCCATGCCGCGCCGCGA 3056664 36 100.0 36 CGCGCCGCGA .................................... TTGGTCAAAAGCTGTCGCCCAAGCATGAGGCAAAAA 3056736 36 100.0 41 GAGGCAAAAA .................................... ACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTATG 3056813 36 100.0 38 ACCCTCTATG .................................... GTGCAAGAATTCCGGGTTGCAGTGCAACACGGTTTTAA 3056887 36 100.0 ACGGTTTTAA .................................... TCTATGGACA ========== ====== ====== ====== ========== ==================================== 29 36 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [35.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [112,46] Score: 0.18/0.18 # # Final direction: R [0.18,1.42 Confidence: HIGH] >NC_016808 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 370285 28 100.0 32 AATTCATTTA ............................ TTTAAAGGTCTTCATTTCACCCGTCTGTAAAT 370345 28 100.0 32 GTCTGTAAAT ............................ TACCTCTTCTTCACTTATACACTGTAAAGCTA 370405 28 100.0 32 TGTAAAGCTA ............................ TTTTCCGAAAACGAAATCGTTAATAACTCATC 370465 28 100.0 32 ATAACTCATC ............................ AATAGATGAGCTGTTTGTAACGGAGTTTCAGA 370525 28 100.0 32 GAGTTTCAGA ............................ TTTTTAACTTGTCAACAATTATTTAAAATTAA 370585 28 100.0 32 TTAAAATTAA ............................ TTCACCAGTAGCTACAAACAGCATAGCTCTGA 370645 28 100.0 32 ATAGCTCTGA ............................ TTGTGTTGTTGTTGTTGTTAATCTTTATGATA 370705 28 100.0 32 CTTTATGATA ............................ GCGAGTGGGACACTACATAGAGCTAACAAAAG 370765 28 100.0 32 CTAACAAAAG ............................ AGTCTTTTTAGTTTGTCAACAATTATTTTAAA 370825 28 100.0 31 TTATTTTAAA ............................ ATTTTAGTTCCTTGTGTTGTTGTTGTTGTCT 370884 28 100.0 32 GTTGTTGTCT ............................ TAAGGAGGTATTAGAAGATGAGCGCGGATAAC 370944 28 100.0 32 CGCGGATAAC ............................ GAGAGTGGGACACTACATAGAGCTAACAAAAG 371004 28 100.0 47 CTAACAAAAG ............................ TTTAGTACATTCTAGTCTAGTAACCGTCTATAACCTAAGCTTGAAAT 371079 28 100.0 32 AGCTTGAAAT ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 371139 28 100.0 32 AGCTTGAAAT ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 371199 28 96.4 32 AGCTTGAAAT .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 371259 28 100.0 31 AGCTTGAAAT ............................ GTTAAAGCTAAGAAACTAACGGATATTGCGA 371318 28 96.4 GATATTGCGA ........................A... ACTCATAATC ========== ====== ====== ====== ========== ============================ 18 28 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:57.14%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.60,-6.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [78.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [142,171] Score: 0/0.18 # # Final direction: F [1.05,0 Confidence: HIGH] >NC_016885 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 986121 24 100.0 42 TACAACGAGC ........................ AGAATATCTACAAATAAAAGACCTGCTAGACCAAATACTAAT 986187 24 100.0 42 AAATACTAAT ........................ CTTGTACAGCGCGTACCTCTCCTCTCCCTGCCTGTCGAAGAA 986253 24 100.0 40 TGTCGAAGAA ........................ GTTAAGCTGGCGTGGTTTCTCATAGGCGCCCTGGGCCTCC 986317 24 100.0 40 CTGGGCCTCC ........................ GAAAATGACGAAAGTCTCGATAAACGACATCACATTTGTG 986381 24 100.0 44 CACATTTGTG ........................ CGCGCCTACGCCTAATCACGTCAACTTGTTCCGGCGTTAAGCAC 986449 24 100.0 43 CGTTAAGCAC ........................ TGAAAAGTTAGGGGGTAAATGGGACGCGAGTGCAGAACGTTTG 986516 24 100.0 44 AGAACGTTTG ........................ ACTACCAAGTGTGTAGATACTATACGCTTTCTGATATGTGCGAC 986584 24 100.0 39 TATGTGCGAC ........................ CTCTTTGTACCTTTCGCGGAGCTTGAGGAGCTCCTCGTA 986647 24 100.0 43 GCTCCTCGTA ........................ GCTTCAACCTGAACCGCACCTATAAGTGCGGCAAGTTCTTCAT 986714 24 100.0 45 AGTTCTTCAT ........................ AGCCCCCCGGCAGAAGTAGGGCCCCCTCCCGCCCTTCCTCCTCCT 986783 24 100.0 42 TCCTCCTCCT ........................ TGTTCTGAGCTATTGCGTTCATCAACGCGGCGTAGAGCCTCG 986849 24 100.0 42 TAGAGCCTCG ........................ TGGAGCGCGGACGCTATGACGCCGCCATTGCCATCGCGGCAC 986915 24 100.0 40 ATCGCGGCAC ........................ GGCGAGCGCCTGGCGCCGGAGGAGCCGGGGTCTGCCTGGA 986979 24 100.0 48 TCTGCCTGGA ........................ TGGACGAGCAATGCGATGAGGGCGGGTGCACAGTGACAGCTAGGATCT 987051 24 100.0 40 GCTAGGATCT ........................ CGCGACGCCGCGCTTCACGAGAACGCGCTCCTCAGAAGTC 987115 24 100.0 42 CTCAGAAGTC ........................ AGAAATATAGTAACGTCATTTTTGTAACTGTCAAAGATTGTC 987181 24 100.0 41 AAAGATTGTC ........................ CGCTTGCCACGGAGGTCGTCATACCGCCGCCCCGGCTCTAC 987246 24 100.0 41 CCGGCTCTAC ........................ GAGGCTAAGAAGATATGGTCGATGCAGTGGGGCTCGCTGAA 987311 24 100.0 39 GCTCGCTGAA ........................ TTTTGCAGACTCGCTGGTAGAAGCCGCGAAGCAAATCTA 987374 24 100.0 AGCAAATCTA ........................ TGGGGTTTCT ========== ====== ====== ====== ========== ======================== 20 24 41 CTTTCAATCCTCTTTTTGAGATTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: R [matched GAATCTCAAAAAGAGGATTGAAAG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [62,730] Score: 0.18/0.18 # # Final direction: R [0,5.18 Confidence: HIGH] >NC_016808 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1595900 28 100.0 32 NNNNNNNNNN AA.TG..A.................... ACCAATCTGATAATCGAGCCAAGATCGCTTTA 1595960 28 100.0 32 NNNNNNNNNN ...............C............ AAGAGCAGAAAACAGAAGAATTGGAAGATGAC 1596020 28 100.0 32 NNNNNNNNNN ..........A....C............ AGTGTAATTCCGCTCCGTTGCTTAAAATAATC 1596080 28 100.0 32 NNNNNNNNNN ...............C............ GTATGAGTTCGGCATTTGCAGAGCTTAAAGCT 1596140 28 100.0 32 NNNNNNNNNN ...............C............ TTGATCCTTTTACGCGTAAACAGAATGCTTTT 1596200 28 100.0 32 NNNNNNNNNN ............................ TATTCAGAATCAAAACGAATACCCAAAATTGC 1596260 28 100.0 32 NNNNNNNNNN ............................ GGTGAGTGGCCTGAGGATGCGGATAGGTGGGA 1596320 28 100.0 32 NNNNNNNNNN ............................ GTTTAGAACTGCCAGATTCAGGTGCCTCATTC 1596380 28 100.0 32 NNNNNNNNNN ............................ GAAGATGACAAGAATTTAACTTTTGATCAGCT 1596440 28 100.0 32 NNNNNNNNNN ............................ CAAATGAACTCACTCGACCGATTGTGTGGCAA 1596500 28 100.0 32 NNNNNNNNNN ............................ GTGCAATCGGCTTAATGTTAGTAACTATCATT 1596560 28 100.0 32 NNNNNNNNNN ............................ CTGTCTTTTGTCATCGACGGTCGATAACGCTC 1596620 28 100.0 32 NNNNNNNNNN ............................ GATCGCCGCTTTCGTCTTCGACTGCTGTCAAA 1596680 28 100.0 32 NNNNNNNNNN ............................ TCCATCTCTTCTTCGTAATAACCGTTTGTTGC 1596740 28 100.0 32 NNNNNNNNNN ............................ TGCGGTCGTTTTTTAACGAAATTCGCGGAAGT 1596800 28 100.0 32 NNNNNNNNNN ............................ AAATTTGAAAGCGCAATGGCAGATGTAAAAAA 1596860 28 100.0 32 NNNNNNNNNN ............................ CGTTTCTTCATTTCGCTTACGCTCCCGTTGAT 1596920 28 100.0 32 NNNNNNNNNN ............................ TTAACTGGGCGAATAAAACAGCAAGTGCGGGT 1596980 28 100.0 32 NNNNNNNNNN ............................ ACCGTTGAGACAAAAGATGTCGTTTGTGACAA 1597040 28 100.0 33 NNNNNNNNNN ............................ AAAAAAGGTGATCGTAGCTTTCACGGCTATCAA 1597101 28 100.0 32 NNNNNNNNNN ............................ TTCCGCAAACTGTATTTAAAAACATATCGATC 1597161 28 100.0 32 NNNNNNNNNN ............................ CTTTCTCTTTCGGCGATTTTCTCGGCAAGATT 1597221 28 100.0 32 NNNNNNNNNN ............................ GATTTCATCTTCCGCTTGACCCGTTACTAAAC 1597281 28 100.0 32 NNNNNNNNNN ............................ ATATGATATTTTTTCAAAGATAAACGGAAAGA 1597341 28 100.0 32 NNNNNNNNNN ............................ TGTGCGCTTTTCGTCATTCGTTGCCCCAAATG 1597401 28 100.0 32 NNNNNNNNNN ............................ GATGCCTGATGACATGTCGCTTTGGGATAAAT 1597461 28 100.0 32 NNNNNNNNNN ............................ GTTGAGAAAAATCAAAATACCGGGTTTTCAAA 1597521 28 100.0 32 NNNNNNNNNN ............................ TTGATTTTAAAGGCGTGGAGGTTTCTTCAACG 1597581 28 100.0 32 NNNNNNNNNN ............................ TGAAATACACAACCGATATTGAAGGGGTAAAT 1597641 28 100.0 33 NNNNNNNNNN ............................ TGAAATCTCTTAAATACTTCGGTTTTTTTCCTG 1597702 28 100.0 32 NNNNNNNNNN ............................ TTTAACAATGTTATGCGTTTTGTAGGGGTAAT 1597762 28 100.0 32 NNNNNNNNNN ............................ CTCACGCAATCGCACAACAATTTTATTAATTT 1597822 28 100.0 32 NNNNNNNNNN ............................ TAAAATTATAACTGTCGTCGCTGGCTTGTAGT 1597882 28 100.0 32 NNNNNNNNNN ............................ ATGGTGCACTGGGTAGCTTCGGTGAGCTAACA 1597942 28 100.0 32 NNNNNNNNNN ............................ CTTCTGTGATACGAGTGTCCCTGATTGGTCGC 1598002 28 100.0 32 NNNNNNNNNN ............................ TAAATAATCAACTAATTAACAGTAGAGGATAT 1598062 28 100.0 32 NNNNNNNNNN ............................ AATCCGCAGGATATTTGGGTATTTCCCGTAGT 1598122 28 100.0 32 NNNNNNNNNN ............................ TTAGATTTACCACATTATAGCGGTGAGGATAT 1598182 28 100.0 32 NNNNNNNNNN ............................ GTTTTTCAGGTGGTTCCCCAAGGTGAGCTGTT 1598242 28 100.0 32 NNNNNNNNNN ............................ TATGCCTATGGTTATCCCTCCTCGCGCTTGGA 1598302 28 100.0 32 NNNNNNNNNN ............................ CCGACCAAGCCCAATGAAAAACAATATATAGA 1598362 28 100.0 32 NNNNNNNNNN ............................ TCAGAGCTATGCTGTTTGTAACTACGGACGAA 1598422 28 100.0 32 NNNNNNNNNN ............................ AACGCCTTTTCAAACAGAATCATTGCGAGCTG 1598482 28 100.0 32 NNNNNNNNNN ............................ GGCAACAGAGGTGGTTGGTGTAACAAGGGCTT 1598542 28 100.0 32 NNNNNNNNNN ............................ CACGATGATACCCACCGACTAAAATCGCAGAA 1598602 28 100.0 32 NNNNNNNNNN ............................ ACGTTCAGTCTAACAGTTGAAGTGTCAGAAAC 1598662 28 100.0 32 NNNNNNNNNN ............................ TTTGTTTTCATCAAACAATTCCACTCCCAAAC 1598722 28 100.0 32 NNNNNNNNNN ............................ ATAATTTAATTAGACGAGGTTGTTTGGAGGGA 1598782 28 100.0 32 NNNNNNNNNN ............................ TCAAAAAATTCTTAGTTTTAGTGGTTTATTTA 1598842 28 100.0 32 NNNNNNNNNN ............................ ATGAACCATTACTATTGTGCCAGTGAACAGCA 1598902 28 100.0 32 NNNNNNNNNN ............................ TCAGGGATTGATCGATAACTTCCCGCCGACGC 1598962 28 100.0 32 NNNNNNNNNN ............................ TAGTGCCAAGATCGGCGATTTTATTTGCGATC 1599022 28 100.0 32 NNNNNNNNNN ............................ AACAGAGCCACACCACGACGGCACGCCGCACT 1599082 28 100.0 32 NNNNNNNNNN ............................ TTCTTTTCTTATATTCGTCTTTTGTCACGAAT 1599142 28 100.0 32 NNNNNNNNNN ............................ GCGGAAAAGTGCGCGTTGATGGCGGGAAATTC 1599202 28 100.0 32 NNNNNNNNNN ............................ CCTGCTTTTAACTGGTCGTTGATTGTCCCCAT 1599262 28 100.0 32 NNNNNNNNNN ............................ AGATGAATCAGCGTAAGAACGCATTCATTGTT 1599322 28 100.0 32 NNNNNNNNNN ............................ CTTCTCATTTAAGGTCGGATGTTTATCAAAAA 1599382 28 100.0 32 NNNNNNNNNN ............................ GTGCTTATCATAAAGATTAACAAACAACACAA 1599442 28 100.0 32 NNNNNNNNNN ............................ GTCTTGTTGAGTAACTTTGAGAGTACTTATGA 1599502 28 100.0 32 NNNNNNNNNN ............................ CTTTAAGATGCCCTGAATGGTCTGTAAGTCGT 1599562 28 100.0 32 NNNNNNNNNN ............................ CCTCTCGCTTTGAATACCAGACGTATGAGATA 1599622 28 100.0 32 NNNNNNNNNN ............................ CGCCCGTAGTTACAAACAGCATAGCTCTGATT 1599682 28 100.0 32 NNNNNNNNNN ............................ ATAACCACGATTGTCTTCTAGTTCCTTGTAGA 1599742 28 100.0 32 NNNNNNNNNN ............................ TGCCTACTAAAGACTCCTCTTTGTTATCGAGT 1599802 28 100.0 32 NNNNNNNNNN ............................ GCAAACAGACGCTTATAACGTTCTTAACAATT 1599862 28 100.0 32 NNNNNNNNNN ............................ CCTTTTGTGTTCTCCCTAACTCTTTCATGTAT 1599922 28 100.0 32 NNNNNNNNNN ............................ TGTATAGTCCGCCATGTCCCCACCGCTATAAT 1599982 28 100.0 32 NNNNNNNNNN ............................ TAATCAAGACCTCTGTAAGCTTTTTACCAACA 1600042 28 100.0 32 NNNNNNNNNN ............................ TTGTTTTCATCAAACAATTCCACTCCTAAGCG 1600102 28 100.0 32 NNNNNNNNNN ............................ AGCGTTGAGACAAAAGATGTCATCTGTGACAA 1600162 28 100.0 32 NNNNNNNNNN ............................ CAATAAGTCAACAATCATAGACGATGACTAAA 1600222 28 100.0 32 NNNNNNNNNN ............................ AGTGGTTGAAAGTACACGGTGCTAACTGTGCA 1600282 28 100.0 32 NNNNNNNNNN ............................ AAACATCGTTCCGATTCTTACGTGTATGAATT 1600342 28 100.0 32 NNNNNNNNNN ............................ GTAGCCTACAAGTGACTAGGACAAGCGGACAA 1600402 28 100.0 32 NNNNNNNNNN ............................ TTCTCTCGGGTGTTGGGGGGATTGAATTAAAC 1600462 28 100.0 32 NNNNNNNNNN ............................ AACTAGACCCCATAAGTCTTCTTTCTTCATGC 1600522 28 100.0 32 NNNNNNNNNN ............................ ATCGACAGATAGTCAACCTTAGTTACTCATCT 1600582 28 100.0 32 NNNNNNNNNN ............................ TGAACACAGCCCGTTTCTCCAATCTTTAAATT 1600642 28 100.0 32 NNNNNNNNNN ............................ ATCGACAGATAGTCAACCTTAGTTACTCATCT 1600702 28 100.0 32 NNNNNNNNNN ............................ TGCTCCTCTATCTTTAGTGATACGGGATAGTT 1600762 28 100.0 32 NNNNNNNNNN ............................ TCTAAAATTTGGTCACGAAAGCCAAACTTTGT 1600822 28 100.0 32 NNNNNNNNNN ............................ CCCCTAAGTCATCATATTCATTTGTACTTAAA 1600882 28 100.0 32 NNNNNNNNNN ............................ CCTAAAATGTTAATGTGGATTTTACGCTCATA 1600942 28 100.0 32 NNNNNNNNNN ............................ ATCGACAGATAGTCAACCTTAGTTACTCATCT 1601002 28 100.0 32 NNNNNNNNNN ............................ TGTGCATTACGACATGGTGAAGGTGACGGATA 1601062 28 100.0 32 NNNNNNNNNN ............................ GGAATGGTGGTAAGAAAATAGTCATCACAGAA 1601122 28 100.0 32 NNNNNNNNNN ............................ CGAGTTCATGTGTGTTCTTATCGAAGTTTTCT 1601182 28 100.0 32 NNNNNNNNNN ............................ TGAAATATTCAGCAGTGCGAGAACAGGAGATT 1601242 28 100.0 32 NNNNNNNNNN ............................ CGTGACTGATTCGAGTTCCAAAGCGACCTGCT 1601302 28 100.0 32 NNNNNNNNNN ............................ GTCATATAAAATCAGGACAACTCAAAGTCGAT 1601362 28 100.0 32 NNNNNNNNNN ............................ CTAGTGGATACAAAGATTCACTTAAACAATGA 1601422 28 100.0 32 NNNNNNNNNN ............................ TAACTGAGGGGTTCGGCGGTCTGAGTCTTTAA 1601482 28 100.0 32 NNNNNNNNNN ............................ ACAAGTCATTAGCGCGCGAATGGTTAGCTTTT 1601542 28 100.0 32 NNNNNNNNNN ............................ AGTAACTAGATGAGTAACTAGATGAGTAACTA 1601602 28 100.0 32 NNNNNNNNNN ............................ TTCTTCAGATGCTGAGACTACAATTGATATGT 1601662 28 100.0 32 NNNNNNNNNN ............................ TTGCACGTAACTGTACGCCAAGTGAGTGGGCT 1601722 28 100.0 32 NNNNNNNNNN ............................ TTTTCGACCAGCGTCATCCATATCAAACATAA 1601782 28 100.0 32 NNNNNNNNNN ............................ CTGACTATTTCCCGGTATGGCAAGAGTATTTC 1601842 28 100.0 32 NNNNNNNNNN ............................ GCCCCGTTCTTGTAAAGATTTAACAACAGACT 1601902 28 100.0 32 NNNNNNNNNN ............................ GAGTCTCCACAAAGTAAAAAAGAAGCGACTAA 1601962 28 100.0 32 NNNNNNNNNN ............................ ACAGTTACGTGCAATCACTTCGATGGCTTCAA 1602022 28 100.0 32 NNNNNNNNNN ............................ AAGACAGTAGATGCAGATAATAAATAAGAAGA 1602082 28 100.0 32 NNNNNNNNNN ............................ ATTAATTTGGTCATGTGGTTAGAGCCGACAGA 1602142 28 100.0 32 NNNNNNNNNN ............................ CAAGACAACCTTTCATGATGTCATCGCCTTGT 1602202 28 100.0 32 NNNNNNNNNN ............................ CTGGAATGGTGACTCTTGTTCAGACCACCAAC 1602262 28 100.0 32 NNNNNNNNNN ............................ TTTATTTAGAAGATTTTTTGAGTGGCGGAGAT 1602322 28 100.0 32 NNNNNNNNNN ............................ CATCTCGATAAAACAAGCTTCGCTTTCTAATC 1602382 28 100.0 32 NNNNNNNNNN ............................ ATGAGGCTGTTTTCGTAATGTCAACTTATAAA 1602442 28 100.0 32 NNNNNNNNNN ............................ TAACTTGTTGTCTATAATATATCAGTCTTTTA 1602502 28 100.0 32 NNNNNNNNNN ............................ ATTCTGCTTCATTGCGTCTCCTTATTTATAAA 1602562 28 100.0 32 NNNNNNNNNN ............................ GAAGCTTTACAGATTCAAACGGAATCTCAAAA 1602622 28 100.0 32 NNNNNNNNNN ............................ ACTTTGTGGCACCGTATGATAAAGTCATAACA 1602682 28 100.0 32 NNNNNNNNNN ............................ GCAAACAGACGCTTATAACGTTCTTAATAATT 1602742 28 100.0 32 NNNNNNNNNN ............................ AAATCTACACAGCTAACAGAGGGTTTGACTTA 1602802 28 100.0 32 NNNNNNNNNN ............................ TGAGAAGTTAGATTTACCTTATTATAGCGGTG 1602862 28 100.0 32 NNNNNNNNNN ............................ GAGCTGAGCTTCGAGAACAAGCTCGTGTTGAA 1602922 28 100.0 32 NNNNNNNNNN ............................ GATAACGGTCTTCCACTTCTTCTTAGTCTCAA 1602982 28 100.0 32 NNNNNNNNNN ............................ TCGAGAAGCAAAACCTTTAGTCTCTTGAGGTT 1603042 28 100.0 32 NNNNNNNNNN ............................ GCAGTAAACGACCACGACTTACAGACCATTCA 1603102 28 100.0 32 NNNNNNNNNN ............................ TGAAGAAGAGGTAGGGGATAGTGTGTCATTAG 1603162 28 100.0 32 NNNNNNNNNN ............................ CAAGCTCATGTGTGTCTTTATCGAAGTGTTCT 1603222 28 100.0 32 NNNNNNNNNN ............................ AACCACTTGTTACTTCTATATATTGTTTTTCA 1603282 28 100.0 33 NNNNNNNNNN ............................ TTAAGACACTTCAATCCCAAGAGCCTTCTAAAG 1603343 28 100.0 32 NNNNNNNNNN ............................ GTTCAAACGTTGTACGGTCTGGATGAAGGGGA 1603403 28 100.0 32 NNNNNNNNNN ............................ TACTCTCCCCCGTCCTAAGCTCCGACGGTATA 1603463 28 100.0 32 NNNNNNNNNN ............................ ATTATGATTTTACAGTGCACGGACACAATCAA 1603523 28 100.0 32 NNNNNNNNNN ............................ AGACGCTAATCATTTGCGTGCGGTCATCCGTT 1603583 28 100.0 32 NNNNNNNNNN ............................ GGCTAATTAACAGTAGAGAATAGGATAATTAA 1603643 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 130 28 32 TTTCTAAGCTGCCTATACGGCAGTTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:57.14%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [53,149] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_016885 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 999562 24 100.0 42 TCGAGGCGGA ........................ CTTTACTGCGCGGTGGTATCGTTACATTGCCAATTGAAGTGA 999628 24 100.0 44 ATTGAAGTGA ........................ TCTCGTGTTACACAACTACGGTGGGATTGGCGTAGACGTAGTGT 999696 24 100.0 42 GACGTAGTGT ........................ GTTTCGTTTGACTACGACGCTAAGAAGTTCGTGGTTAATGAG 999762 24 100.0 43 GGTTAATGAG ........................ GTAAGCACGTCTACACCTGAGTACTGCCCGCGGACGTAGTTAG 999829 24 100.0 44 ACGTAGTTAG ........................ CATTTCACACTACCATGATTTTCTTGATTCTCAAATAGCAATGA 999897 24 100.0 42 ATAGCAATGA ........................ ACTCATATGCCACGCCGGCGGCAGAGTGTTGCTACAGTACGT 999963 24 100.0 46 TACAGTACGT ........................ GCATGCGTCCTCATCAGCGCTTCGTACTCGCGGCGGAGGTACTCTG 1000033 24 100.0 45 AGGTACTCTG ........................ GGAGGCGGAAAAGAGGGGGGAGGGGTATCTTGTGATTAGAGCCGG 1000102 24 100.0 42 TTAGAGCCGG ........................ AGATGATAGAGGCCTTGGCCAGGGCACTCGGCCGGGAGGCCC 1000168 24 100.0 39 CGGGAGGCCC ........................ ATATCCCGGCTAGTTGCGCGTATTGGTGTATCCCCTGCA 1000231 24 100.0 47 ATCCCCTGCA ........................ CAGAGAGAGATGTGCAGTTTATATTCCCTACGCGTAGAGATGTTCGC 1000302 24 100.0 43 AGATGTTCGC ........................ ATTCCGCTTTTTTGTACTCTATCTTTTTACACATGGCTAAGAG 1000369 24 100.0 46 TGGCTAAGAG ........................ CCTAGCCATAGGAGCGAGGGGACAGAGACGACGTTTAGGTAGTCGT 1000439 24 100.0 41 AGGTAGTCGT ........................ TCTGTTCTTTTATGAGACCTAAAACCGTTGCCCTGGGCTCT 1000504 24 100.0 43 CCTGGGCTCT ........................ CATGTGAAAACTCATGGCTATGCCTAAGAAAAGCGCAATAAAT 1000571 24 100.0 41 CGCAATAAAT ........................ TTCAAGAAGACATGGTACCGGAAACAATAATAGTAAATACA 1000636 24 100.0 40 AGTAAATACA ........................ AGCTCATTGTGTCGAAGCTGTGTATCTGCCTGCCTAGGAG 1000700 24 100.0 40 TGCCTAGGAG ........................ CGAAGTCGCGGCTGACAACGGCCATCGCGGCGAAGCAGCG 1000764 24 100.0 41 CGAAGCAGCG ........................ TCACTACAGAGACCAATACCGCTCGGCCTCGCCTATGTCAC 1000829 24 100.0 40 CCTATGTCAC ........................ CGGGCTCCGACAGCTCGATAATGTGGGCGCCCGTGACAAG 1000893 24 100.0 44 CCGTGACAAG ........................ ATTTCCTTTGCCTTCTTATATACATCAGGCGAGAGCCACACATG 1000961 24 100.0 43 GCCACACATG ........................ GAGGAAATAAATGAATTAGGCGACCAGGAATGGGAGGACTTAA 1001028 24 100.0 39 GAGGACTTAA ........................ TTCACGCGTTTTTTTCTCTCATGATTGGGACTGGGTTTA 1001091 24 100.0 41 ACTGGGTTTA ........................ AGCCGATCGTAGAGAAAGTGGCTAACAGCAAGTACTCTAAT 1001156 24 100.0 42 GTACTCTAAT ........................ CTGGTAAGAAGGTTGTCATGCAGCTGCTGCGCGACCTCACAG 1001222 24 100.0 41 GACCTCACAG ........................ TGCAATTGCGGCCGTCGGCGCGGCGGTTTACTTCGCGCACT 1001287 24 100.0 46 TTCGCGCACT ........................ GTTAGTTGCGGAAATCGAAAGATATTGGAACGTTCCAAAGTGGATA 1001357 24 100.0 37 AAAGTGGATA ........................ AGATGGGATATACCACTTCTTTGCCGTCAAGGAAGAC 1001418 24 100.0 43 CAAGGAAGAC ........................ GCCAGGGTAATCTTCGAGAGTGATAGGTACGGAGTGGAGCTTA 1001485 24 100.0 42 GTGGAGCTTA ........................ ACCGACTTCGGCAGGGGGGTTGTGGTGTCGGCTGTGTGGACA 1001551 24 100.0 43 TGTGTGGACA ........................ CCACTTCTCCTCAATGCAGCGTTCCGTGCACTTGTTCACGCAT 1001618 24 100.0 43 GTTCACGCAT ........................ CGGCATAGTCTGCGAGGGGGATGTATGCAGGCACGGGGATCAC 1001685 24 100.0 43 CGGGGATCAC ........................ ATTATAAACACCTGGACAATCCTCATCTCGCAACAGCTCTGAC 1001752 24 100.0 45 CAGCTCTGAC ........................ CGTTTGTGTCGATGGGGTACCTATCTGGGCAGTACTACATATCGC 1001821 24 100.0 42 TACATATCGC ........................ GCCCTTCAATTTGGCAATATCTACAAACCTGCGGATATACGC 1001887 24 100.0 44 GGATATACGC ........................ TGTCTACAAGCTCGCCGAGCAACCTCCACGACGTTTCCGAAATC 1001955 24 100.0 42 TTCCGAAATC ........................ GATTCGATTAAAGTGCAACAAGTTCTGTGCATCAGTCTGCGT 1002021 24 100.0 48 CAGTCTGCGT ........................ CCCGACACGTATCAACAATACACAACCAAGCCGTTACATGTGTAAAGA 1002093 24 100.0 39 TGTGTAAAGA ........................ CATGGCAGATGCACTGGTATTGTTGGCAAAGGAGATATA 1002156 24 100.0 AGGAGATATA ........................ TGGGGTTTCT ========== ====== ====== ====== ========== ======================== 40 24 42 CTTTCAATCCTCTTTTTGAGATTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: R [matched GAATCTCAAAAAGAGGATTGAAAG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [510,360] Score: 0/0.18 # # Final direction: R [0,5.27 Confidence: HIGH] >NC_016885 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 952361 25 100.0 42 CACACGAGCC ......................... GCAAAGAAGGCGCAGTACCCCGGCAAAGACCTGAGGCGCCAG 952428 25 100.0 43 GAGGCGCCAG ......................... CGCACACATGTGCCTCCGCCAGATATGCTGAAATACGCCAGCC 952496 25 100.0 46 TACGCCAGCC ......................... TTCCCCGCGAGGAACTGCCGCAGCTTGCGCACGTGGCGGCAGCGCG 952567 25 100.0 42 CGGCAGCGCG ......................... ATTCTTCTGTGCAAAAGGTCTTCAAGGCCTCTGACACAATCA 952634 25 100.0 44 GACACAATCA ......................... AACAAGTCGACTATTTGCTGATCCCCGAAATCAGCAATATACAG 952703 25 100.0 48 CAATATACAG ......................... TATCAGACATCGTGATCCGCAACCTAGCTATGACGTCTTTCAGCTTCG 952776 25 100.0 43 TTCAGCTTCG ......................... GGCGAGGCGCTGAATTACGCGGAACGATATTTCGTATTTACGC 952844 25 100.0 43 GTATTTACGC ......................... TCTTTAGAAGACGAGCCACGTATTGCGGGTCTACAGGCACCCT 952912 25 100.0 45 CAGGCACCCT ......................... GCCCACTTTTGGTAGTCCCCGTGCGGATCCACGATTATAATCCTC 952982 25 96.0 42 TATAATCCTC .............A........... GTAGAATTCGTCGTGCTCCAGGAAAATAATCATAGCGGCTCT 953049 25 96.0 51 TAGCGGCTCT ..G...................... AGCGTAGGCCCATTCCCATTACCAGCTACCCTCACTTCAACACCTCTGCTG 953125 25 96.0 ACCTCTGCTG ..G...................... CCAACTTAAC ========== ====== ====== ====== ========== ========================= 12 25 44 GTCAAAATCAAAAGATAGTTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.00%AT] # Reference repeat match suggestion: F [matched GTGGAAATCAAAAGATAGTAGAAAC with 88% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [255,247] Score: 0/0.18 # # Final direction: F [0.91,0 Confidence: HIGH] >NC_016826 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1273107 36 100.0 31 NNNNNNNNNN TCA.CA.............................A CACATACTTTGCGCTATCATTACCAGACAAT 1273174 36 100.0 30 NNNNNNNNNN .................................... AAACAATTGCAATTCTTAGCGCGAACGATT 1273240 36 100.0 30 NNNNNNNNNN .................................... AATTCCCACTTGGAATTGCATAAAACACAA 1273306 36 100.0 30 NNNNNNNNNN .................................... AATTCCCACTTGGAATTGCATAAAACACAA 1273372 36 100.0 30 NNNNNNNNNN .................................... ACTGTTTCAGCAACAATGCTAATCAAATCA 1273438 36 100.0 30 NNNNNNNNNN .................................... CATGAGATGCTTATCGTGACTAAAAGTGTA 1273504 36 100.0 30 NNNNNNNNNN .................................... GTATTAAGCGCATTTATCACCGCAAGTCAA 1273570 36 100.0 30 NNNNNNNNNN .................................... AGCCACAGCTAAATTAGCATCAATGGAAAG 1273636 36 100.0 28 NNNNNNNNNN ..................................C. GCAAGTTGAGTCGCTATAATTTCAAAAG 1273700 36 100.0 30 NNNNNNNNNN .................................... ACCATTTGAAGAATGAATATTGGATGTTGC 1273766 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 11 36 29 GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-5.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [121,273] Score: 0.18/0.18 # # Final direction: R [0.27,0.96 Confidence: MEDIUM] >NC_016884 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 3246091 30 100.0 34 NNNNNNNNNN .GA.T..GC.GGA...C.C........... GTCCCTGTCGTCATATTAGCCTGGCCGCCACTCT 3246155 30 100.0 34 NNNNNNNNNN .............................. CAGCCACATGATACGATGAAGGCGCACCAAAAAA 3246219 30 100.0 35 NNNNNNNNNN .............................. CCGGCAGGCGTTCTTTTTCCCGCTTGGTTAGGCGG 3246284 30 100.0 35 NNNNNNNNNN .............................. CGCCTGTTGGACACATACCTGCGTGAACGGAGAGA 3246349 30 100.0 35 NNNNNNNNNN .............................. GATGAGTCATCCTTCAACCACTCCCTCCAATCGCG 3246414 30 100.0 35 NNNNNNNNNN .............................. CCGACTTGGTTACCGAACTGTTAGACGTGATACCG 3246479 30 100.0 34 NNNNNNNNNN .............................. TCACAACAAATCACCCCACTTGCAAAATTGAACA 3246543 30 100.0 36 NNNNNNNNNN .............................. TAACATCCACGGTACGGTACGCTGAAAGGGAATCTA 3246609 30 100.0 35 NNNNNNNNNN .............................. CAAAATCCACCGCCAAGGGTCCGGACAGAAATTTG 3246674 30 100.0 34 NNNNNNNNNN .............................. GGGATTTCTCAGCCATGTTCTGTCCTCCTTACCA 3246738 30 100.0 35 NNNNNNNNNN .............................. TGTTAGCGCAGCAACAGTTCGCCGGCTGGGAAGAC 3246803 30 100.0 37 NNNNNNNNNN .............................. TATGCGTTACCGACAGCGTAGATTACCACGATGCCGG 3246870 30 100.0 35 NNNNNNNNNN .............................. AACAGCCGGGCAACACCGTCAATGGCACCGGGTCG 3246935 30 100.0 35 NNNNNNNNNN .............................. CGCAACTCATCAACAACCCGCCGACCTGTAACGCA 3247000 30 100.0 35 NNNNNNNNNN .............................. TGCATGAGCATCTATTCGCTCCTCCATATGAGGGA 3247065 30 100.0 34 NNNNNNNNNN .............................. CCTACCGCTTGGCGCCAGTCGCTTGGCGCACTGT 3247129 30 100.0 36 NNNNNNNNNN .............................. CATACGCCCGTGGGTTTCGTGGCGATATGCGTCAAA 3247195 30 100.0 38 NNNNNNNNNN .............................. GGAAATCGCCGAAGATGCGTACTGCGCGGAACGGCAAA 3247263 30 100.0 37 NNNNNNNNNN .............................. ATCGGGTTCCGTGCTGTGGACGGCGTCCCGTAATCAT 3247330 30 100.0 35 NNNNNNNNNN .............................. CGGTCTTTCGCTGGCAGGGCCGCCTCTACGATTAT 3247395 30 100.0 36 NNNNNNNNNN .............................. TTATGCTGGGCGAAGAGGCCGGTGCCTTCATTGACG 3247461 30 100.0 37 NNNNNNNNNN .............................. CGCCCCCGCTCCCCGGTGATCGGCACCACGGCGTTCA 3247528 30 100.0 36 NNNNNNNNNN .............................. GCGCTCCTCGCCTTCCAACATGACCGCCTGTTTTGG 3247594 30 100.0 35 NNNNNNNNNN .............................. TGGATGCGCCGCACAATCGCGGCGATTTCCTGAAT 3247659 30 100.0 35 NNNNNNNNNN .............................. GGGCCTATCGGCACATTCTGACCACGTTGTCGGAT 3247724 30 100.0 35 NNNNNNNNNN .............................. ATCAGCGCGTTCACGACGCCTGGATGGCGGAAAAG 3247789 30 100.0 35 NNNNNNNNNN .............................. TCCCCATCGTCTCGGCGATGAAGGCCCAGTAGGAA 3247854 30 100.0 36 NNNNNNNNNN .............................. TGTATCTCGCACGATTAGGCGCTGTGCAACGGGTAG 3247920 30 100.0 35 NNNNNNNNNN .............................. CAGCCACGGTAGGCTACGATGATAGTGAATTGAGA 3247985 30 100.0 34 NNNNNNNNNN .............................. CCACTTCGAGCGAGGATAAGTGGCCCGGTTCCCA 3248049 30 100.0 37 NNNNNNNNNN .............................. TCGGCTTCCGGCGAAACGGTGGGATTGGGATTGGCGG 3248116 30 100.0 37 NNNNNNNNNN .............................. GCTTGGACGACCCGAATTGCCGAGGCGTGACGGATCC 3248183 30 100.0 35 NNNNNNNNNN .............................. GTCGACGGGTTCCACGCTATGCCAGTCGATGGTGG 3248248 30 100.0 38 NNNNNNNNNN .............................. TGGTGGCGGCGGATCCGTATTCTGACGGATTTTTAATT 3248316 30 100.0 36 NNNNNNNNNN .............................. GGGGCCTTGTCCCAGCCGCCCGCGCCCCAGGGAGTG 3248382 30 100.0 36 NNNNNNNNNN .............................. CCACTCGGCCGGCACGTCTGGCACGGTTTGCTCGCG 3248448 30 100.0 38 NNNNNNNNNN .............................. CGGCGAAGGCCATGAGCCAGATCTACCATGATTCGGCG 3248516 30 100.0 37 NNNNNNNNNN .............................. GCGAGCCAACTGCCATGATGCGGACTGACCTCCCGGG 3248583 30 100.0 36 NNNNNNNNNN .............................. CTATCCCTCCTCCCATTCGCTCGGACTGGTGGCCCG 3248649 30 100.0 35 NNNNNNNNNN .............................. CCAGAAAACCCGAAAAAAAGAAATGTTGACATCCG 3248714 30 100.0 37 NNNNNNNNNN .............................. GTAATCATACGGCCTCACCGGCATCGCCACGTAGGAG 3248781 30 100.0 36 NNNNNNNNNN .............................. TCGGCACAGAAGCCACGTTAAATGGAGCCCTAACAG 3248847 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 43 30 35 GTTTCAATTCCTCATAGGTAGGCTATAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [45.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [784,619] Score: 0/0.18 # # Final direction: R [0,5.55 Confidence: HIGH] >NC_016885 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================== ====== 938395 21 100.0 50 GGCATGTGTC ..................... TGACCGGTATATACAATTGAAGCTAATCGGCTAAGATTGGCTAAGCTCTT 938466 21 100.0 48 CTAAGCTCTT ..................... AGACAGGCCGCCGCAATTGCGGGCTATGTCTGAGCCGAGATCTATTCT 938535 21 100.0 46 GATCTATTCT ..................... TGACCCGCGCATTACGTTTTCCCTTTACGTCGCGCACCGTATAGAC 938602 21 100.0 50 CCGTATAGAC ..................... TGACATTGCTGAGGGAATCAGACCAGCATTCGATGCTTTGACGTCTCAAC 938673 21 100.0 47 ACGTCTCAAC ..................... CTGGGGACTCCAAAGCACATTCCCACCAACGCGTTCTATGTTATCTC 938741 21 100.0 49 ATGTTATCTC ..................... CTGGGTATGTGGGAGTGATGGAGAAGGGGGGTGTTGTGGCGGTGACTAT 938811 21 100.0 45 CGGTGACTAT ..................... CTGGATGCGGCCATACGTGTTTAGCATTAATCGCTACCTTGATAG 938877 21 100.0 ACCTTGATAG ..................... CTGGGGCTTA ========== ====== ====== ====== ========== ===================== 8 21 47 GTTTCAACTATCTTTTGATTT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.19%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [48.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [538,241] Score: 0.18/0.18 # # Final direction: R [0.18,0.27 Confidence: LOW] >NC_016885 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================== ====== 937975 26 96.2 42 CGCGTACCGC -......................... GGGTGTTCATAACAAAACTATACCGCGCAGTAAGGCGTATTA 938043 26 100.0 47 AGGCGTATTA .......................... TGTTACCGGGTAATGCTGGGTTTACCCCGTTAAAAACGGGTGGCTCA 938116 26 100.0 GGGTGGCTCA .......................... GGCGCCAGGGACTACGTCCTCCCGCTGGCGGAGGCCGTTAGGC ========== ====== ====== ====== ========== ========================== 3 26 44 TGTTTCAACTATCTTTTGATTTTGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:73.08%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [21.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [118,997] Score: 0.18/0.18 # # Final direction: R [0,0.86 Confidence: HIGH] >NC_016884 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 3258490 30 100.0 34 CGGCACATGC .............................. TCCAGTCGTAGGCGGTTGTCCCTTGGGTTTCCAT 3258554 30 100.0 37 GGGTTTCCAT .............................. TACCATGTTGACCGGTTGTTGCATAGTATCATGCTAC 3258621 30 100.0 36 ATCATGCTAC .............................. CTATTGCCGGAGTCCAGTCGTCGTCCGGCGTATCGG 3258687 30 100.0 36 GGCGTATCGG .............................. AATCTCACCCCATCGGAGTGGGAAGCCTATAACTCG 3258753 30 100.0 38 CTATAACTCG .............................. TACCAGTGCCAGCCAACCGGAGAGCCGGCCATGAACCA 3258821 30 100.0 35 CCATGAACCA .............................. CATCTAGCCGAAAATTGGCTGGATGTAACCTTAGA 3258886 30 100.0 35 TAACCTTAGA .............................. CGGAGGCGGCTGTGGCGATCCTCACGCTCCGCGAT 3258951 30 100.0 38 GCTCCGCGAT .............................. GTCTTTTTATGGAGCGGTAATGCATGATAAGCCTGAAC 3259019 30 100.0 34 AAGCCTGAAC .............................. GTTTGGGTACTTTTCCTTGCCCATGATACGAGAT 3259083 30 100.0 37 GATACGAGAT .............................. CAAGATGCTCAGATCACGATCGGGGCCGGAGGAAATG 3259150 30 100.0 34 GGAGGAAATG .............................. GTTTGGGTACTTTTCCTTGCCCATGATACGAGAT 3259214 30 100.0 38 GATACGAGAT .............................. GCCAGTCGCCGGCGACGATCCGGGTTCGGCCGCATACG 3259282 30 100.0 34 GCCGCATACG .............................. GAGCGACGGCACCGGCAGCACCGGCGGGACAGGA 3259346 30 100.0 36 CGGGACAGGA .............................. GGATTTGGGTATGGACTTCCTGGTGTTCCCACTGCA 3259412 30 100.0 36 TCCCACTGCA .............................. TGGCCGAGTTACTGACGGCAGCCGACGTCAATGCAA 3259478 30 100.0 34 GTCAATGCAA .............................. CTTTCTCCTCGGGTAAGCGTTTGAACGGCTTGAA 3259542 30 100.0 35 ACGGCTTGAA .............................. TAACAGTCGTATCATCGTCGATGAAGGCGGAACAA 3259607 30 100.0 34 GGCGGAACAA .............................. CGCAACCGCCTGTTGGCGCTCTAATCCGCTACGG 3259671 30 100.0 35 TCCGCTACGG .............................. ACGATACGGTCGTGGTCAGTGAGGTTGTGTTCGGG 3259736 30 100.0 36 TGTGTTCGGG .............................. GCATTCTTCCATGGCCCGGACAATCACGTCCATCGT 3259802 30 100.0 35 CGTCCATCGT .............................. TCGTCGGCGGCATGGGGGATCATCCACGTATACAG 3259867 30 100.0 36 ACGTATACAG .............................. CTTGGCGATGCAGGATGACGGATGGATTCTCCGGAG 3259933 30 100.0 TTCTCCGGAG .............................. CCATTTTGCG ========== ====== ====== ====== ========== ============================== 23 30 35 ATTTCAATTCCTCATAGGTAGGCTATAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [53.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [457,421] Score: 0/0.18 # # Final direction: R [0,5.14 Confidence: HIGH] >NC_016885 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 945613 25 100.0 43 CACACGAGCC ......................... TCATACCCCGTCCTAAACGGCTCCATTTTCTTCAAATACCCAA 945681 25 100.0 45 AAATACCCAA ......................... ACATAACGTAATTTTGGATAGTATCCTTCATTTTCAAATACACTT 945751 25 100.0 43 AAATACACTT ......................... GAGCTTTGGGCACATCTCTTTTTGGAGCAACATGTAAAGCTCC 945819 25 100.0 40 GTAAAGCTCC ......................... ACAGTTACAGCTGCTACGGAAGATTGGCGTAGAGGTGCCG 945884 25 100.0 46 AGAGGTGCCG ......................... ATGATGAAATATTCAGGCGCGCGCTGGCCGATACTTTCGGGAAGCT 945955 25 100.0 48 TCGGGAAGCT ......................... CTCCACCCGCCATAGAAGCCGCTCATGTCAAACGATTCACACAGCACC 946028 25 100.0 44 ACACAGCACC ......................... TCTCTTACTAAAAGAAGAAAGGGAAAGGAAAAACCCCGCTTTTT 946097 25 100.0 42 CCCGCTTTTT ......................... CGACGCGGCCGAGGTCAACGCGAAGTTCGCGCCGCACGTTGC 946164 25 100.0 47 CGCACGTTGC ......................... CATAAGAGTAGAAAATGGCATAGTAACGCGGTAGTGACAACTGTGTC 946236 25 100.0 44 CAACTGTGTC ......................... ACTACTATCTTACTAGTTGCATATGGCACTATTTTAAAGACACC 946305 25 96.0 43 TAAAGACACC ...A..................... TGGGTCTGGGCTTCTAACTGGCTTTATGGGGTTTTTGTGGGCG 946373 25 100.0 46 TTTGTGGGCG ......................... GGCTGTCGTCTGACGTAGATCCCCTGTCTGACGACTTTAACTTCTT 946444 25 100.0 45 TTAACTTCTT ......................... GTGAAATACTCGACCCAGGCGCGATAAGTTGCCCAACTCCTCTTG 946514 25 100.0 ACTCCTCTTG ......................... TTGTAAAACTCGTTGATTGTCTGAAGCGCCGAGAACCCCAACGCC ========== ====== ====== ====== ========== ========================= 14 25 44 CCAGAAATCAAAAGATAGTTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [261,321] Score: 0/0.18 # # Final direction: F [0.41,0 Confidence: MEDIUM] >NC_016902 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1048212 29 100.0 33 TATGTTTACA ............................. GGACCGACCAGTGGCGGCGGGGTAAATAAATGA 1048274 29 100.0 32 AAATAAATGA ............................. TCTTTCTGCTCTATCCCTGAAGAGCGTACGTC 1048335 29 100.0 32 AGCGTACGTC ............................. CCGTCAGTAAACCCGCTGGCGGGTACTGGATA 1048396 29 100.0 32 GTACTGGATA ............................. TAAAAATTAGGCTTCCACGCCTCAACGCCAGT 1048457 29 100.0 32 CAACGCCAGT ............................. CCCTCCAGGCTATCGCAGCACTGGTCCCGTTT 1048518 29 100.0 32 GGTCCCGTTT ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 1048579 29 100.0 32 CAGAAAAACA ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 1048640 29 100.0 32 ACGTCGTCTT ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 1048701 29 100.0 32 TTATCGTGAT ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 1048762 29 100.0 32 AACGTGATTA ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 1048823 29 96.6 AATGTCAGGC ............................A CCATATAAC ========== ====== ====== ====== ========== ============================= 11 29 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,3] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-13.40,-12.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [341,640] Score: 0/0.18 # # Final direction: F [1.65,0 Confidence: HIGH] >NC_016902 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1074555 29 100.0 32 TATGCTTAGT ............................. GCAAAACCCTCGACTGGACAAATACCGGCGCG 1074616 29 100.0 32 TACCGGCGCG ............................. GTCTGTTATGCGAATATTTTTATTCTACTTTA 1074677 29 100.0 32 TTCTACTTTA ............................. GTTTTTACTCTCTGCCGCTGAGCGTCACACGG 1074738 29 100.0 32 CGTCACACGG ............................. GACTGCATATGAGCACGAGACACCCGGTAATT 1074799 29 100.0 32 CCCGGTAATT ............................. CTATTCCCCTGACCGGACATACCCTGGACAAT 1074860 29 100.0 32 CCTGGACAAT ............................. GGCGTCAAACTCTTTGTCACTCATACCAAAGA 1074921 29 100.0 32 ATACCAAAGA ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 1074982 29 100.0 32 TTGTAAAACC ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 1075043 29 100.0 32 AAGTTAACTA ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 1075104 29 100.0 32 TTTTCAGCAA ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 1075165 29 100.0 32 TTATGTTGCC ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 1075226 29 100.0 32 CAAAACCAGC ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 1075287 29 100.0 32 CTGGTTTCAG ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 1075348 29 100.0 32 GTACGCGCGT ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 1075409 29 100.0 GTTTGGTTTT ............................. GGCGCACTGGA ========== ====== ====== ====== ========== ============================= 15 29 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-13.40,-12.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [98,83] Score: 0/0.18 # # Final direction: F [1.51,0 Confidence: HIGH] >NC_016887 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 3956387 30 96.7 31 AGCATGCTCA .............G................ CAGCGGCGTCGATCTTGTTGGGTGAGTCGGG 3956448 30 100.0 31 GTGAGTCGGG .............................. ACTCCTGGACTGCCGTGTCGAGGTTCATGCT 3956509 30 96.7 31 GGTTCATGCT .............................C GCCCCGGCCGGGTTGGTCGGGGCGCCTTGCT 3956570 30 100.0 31 GCGCCTTGCT .............................. TTCTGTCCGACACCAACGTCTACAACCGGGC 3956631 30 100.0 ACAACCGGGC .............................. CTTCCTGACC ========== ====== ====== ====== ========== ============================== 5 30 31 GGGCTCATCCCCGCGCGTGCGGGGAGCGCA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [3,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-14.30,-14.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [502,463] Score: 0/0.18 # # Final direction: R [0.37,0.68 Confidence: LOW] >NC_016887 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3958773 29 100.0 33 NNNNNNNNNN ............CGCGCCTGC....AGCA CGCGAGCAATGTCATATACAGGCGGTCTGGCTT 3958835 29 100.0 31 NNNNNNNNNN ..............A....T...AGCACG CTGGTCCATGCCTCACAGCATCGCACACATT 3958895 29 100.0 32 NNNNNNNNNN ............A...............T TCGACGTCGTCGATCATCGTGTCCGGCAGCAG 3958956 29 100.0 32 NNNNNNNNNN ............................. GTCGGCCTCCCGCTCGCTGCGGCTGGCCGCGA 3959017 29 100.0 32 NNNNNNNNNN ............................. ATGGCGGTGATGACAGCGTGGCGGGCGTCGAG 3959078 29 100.0 32 NNNNNNNNNN ............................. TCGGGAGGCCCGCAGCCATACCCCGGTCAGTT 3959139 29 100.0 32 NNNNNNNNNN ............................. TGACACGGCCATCGAGTCGAGGACCGATGCCA 3959200 29 100.0 32 NNNNNNNNNN ............................. CGACACCGCTGTCGGTGACGACCTTGCGGGTC 3959261 29 100.0 32 NNNNNNNNNN ............................. CGGATTCGCGAAACACAAGCCCGGATCGACTC 3959322 29 100.0 32 NNNNNNNNNN ............................. GGTGTGTCGCTGCTGTCGACGATGAGGTCCAC 3959383 29 100.0 30 NNNNNNNNNN ............................. GACGGCACCAAGTTCTACTGCACCGGCTCG 3959442 29 100.0 1 NNNNNNNNNN CT........................... NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 12 29 31 GGGCTCATCCCCGCGCGTGCGGGGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [3,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [23-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [25.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [189,84] Score: 0.18/0.18 # # Final direction: R [0.18,0.68 Confidence: MEDIUM] >NC_016894 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 3377721 30 100.0 34 NNNNNNNNNN .AACCG........................ AATAAATTGAGATGGCAAAATGTTATATTCATTC 3377785 30 100.0 36 NNNNNNNNNN .A..TACA...................... TTTGGCGACCGTAGAAATTGTCGTTTGGGTTCTGAT 3377851 30 100.0 36 NNNNNNNNNN .............................. GATGGCGCTTGCAAGGGTAATCCCGGCGTTGGTGGT 3377917 30 100.0 36 NNNNNNNNNN .............................. CAAGGTTGAATTCCGAGAATTGGTAGCGGCGGATTA 3377983 30 100.0 37 NNNNNNNNNN .............................. TGGGTGGCGTAACCCAAAGCTTAACAGACCGGATCAG 3378050 30 100.0 34 NNNNNNNNNN .............................. GAAAATGAAGTCAATGCCCTAGCCCCGGCATTGC 3378114 30 100.0 36 NNNNNNNNNN .............................. ATCAGTGTCGGTGCGTCTTCGGACAACGCAACTTTT 3378180 30 100.0 36 NNNNNNNNNN .............................. TAATCGATTAAGTTCTTCAACAACATCATCCACGAA 3378246 30 100.0 35 NNNNNNNNNN .............................. CTTCTAATTGCGATACTAGGTCATAGGCCTTTTGC 3378311 30 100.0 36 NNNNNNNNNN .............................. CGGTATATGTAAAGCCGTTCGGGTGTTGGTAGCACG 3378377 30 100.0 36 NNNNNNNNNN .............................. TTGCGCTTTTTGTCAACGAGATTGATGGAGAAATGA 3378443 30 100.0 36 NNNNNNNNNN .............................. TTTATTATAAGAATGAACGGGAAGTTATGGAATCGT 3378509 30 100.0 35 NNNNNNNNNN .............................. ACGATCAGCCCCAACACTATTAGCCTGTTCAACTG 3378574 30 100.0 35 NNNNNNNNNN .............................. AAAGTCTCCCCGAAGCTGATAGCCTGATAGTTATT 3378639 30 100.0 35 NNNNNNNNNN .............................. GACTATAAAAATGTTGTTACTAACGTAAAGCCAAA 3378704 30 100.0 35 NNNNNNNNNN .............................. GCGCTTAAAAGCCCTCTTCAATTCAAATTTCCAAA 3378769 30 100.0 36 NNNNNNNNNN .............................. TACGATTGATATACCGTTTATACTCTTTACTTTGAA 3378835 30 100.0 36 NNNNNNNNNN .............................. TTGTAGTTCGTCCATTGCCATTTTAACCGCATCGGT 3378901 30 100.0 36 NNNNNNNNNN .............................. TCTTAATAACATTCATCTCATCACCTCATAGAATAA 3378967 30 100.0 36 NNNNNNNNNN .............................. TTGTTTATTAATGATCAAGTGTTTAGCATTAAGATG 3379033 30 100.0 34 NNNNNNNNNN .............................. AAAATGGAGAATTAAATACAACTAGTTCACCATC 3379097 30 100.0 37 NNNNNNNNNN .............................. GATTATAAAGTAATGATAAATCAATCACTAAATTAAC 3379164 30 100.0 36 NNNNNNNNNN .............................. CCCCCATTGCCTAATTCTCTTGCGCAAATAGCCCAA 3379230 30 100.0 36 NNNNNNNNNN .............................. AAAATGGTTGAAGTCGTATTAGAAGACGTTGGCAAC 3379296 30 100.0 35 NNNNNNNNNN .............................. TAAACTAAATACCGGCAGAACAGGACGCTTCCAAA 3379361 30 100.0 35 NNNNNNNNNN .............................. ATACGTAATCTCTATCAGTAATAGTGCCATACGTT 3379426 30 100.0 36 NNNNNNNNNN .............................. ACAAAATAACAGATAAGCCGCTGTTCTGCTATTGTA 3379492 30 100.0 36 NNNNNNNNNN .............................. GCTAGCAGAGATCAAAACCGTCGATGGACCTAGCAG 3379558 30 100.0 34 NNNNNNNNNN .............................. CGTATTGCCCTGAGCTGTCCAGGTACGTAAACTT 3379622 30 100.0 35 NNNNNNNNNN .............................. TCTTTTGCAAATCGATTGTCGTAACCGCTTTTAAA 3379687 30 100.0 34 NNNNNNNNNN .............................. CAACCGGACTGGCCGCGAAATATTATTGTAGTTG 3379751 30 100.0 35 NNNNNNNNNN .............................. GCATTACCAATTATTTGGAAAGCACCTGTGAAAAG 3379816 30 100.0 35 NNNNNNNNNN .............................. AAGAATTGTTTCTTTTGCTTTTCTCATGTCTTCAA 3379881 30 100.0 36 NNNNNNNNNN .............................. AAAATGGTTGAAGTCGTATTAGAAGACGTTGGCAAC 3379947 30 100.0 35 NNNNNNNNNN .............................. TCGCCATCGTCATTCCCAGTAACGACAATATCCGA 3380012 30 100.0 35 NNNNNNNNNN .............................. ATTTATCCCGATATTGAAGCGGTTTTCATTGATAC 3380077 30 100.0 38 NNNNNNNNNN .............................. TAATGCATCGATAATCTCAATGCCGGCATTAATTTTTC 3380145 30 100.0 35 NNNNNNNNNN .............................. AGAAATAAATTAGTTGATGAACTCAACACGAAATA 3380210 30 100.0 36 NNNNNNNNNN .............................. AACAATCCGGGTAAACCGATCCGGCGTCATAACAGT 3380276 30 100.0 35 NNNNNNNNNN .............................. GACGATTTAATTAAAGCTATTAATGATTTTGATTC 3380341 30 100.0 36 NNNNNNNNNN .............................. TAATACTGTTTATTTTTCTTTTCAGATCATTATAAG 3380407 30 100.0 37 NNNNNNNNNN .............................. CGCCGGGGCCTCTCCCAAGAGTAGGTCAGCAATCTTA 3380474 30 100.0 36 NNNNNNNNNN .............................. CTTTTTACATCTTTTAAGTTCATTTTTATTCCTCCC 3380540 30 100.0 36 NNNNNNNNNN .............................. CCCGCATTGACGCTATTATTTGTTATTTCTCTACTC 3380606 30 100.0 37 NNNNNNNNNN .............................. GTTGACAAAATACGCATTGCGTACTAGAATAAACGCA 3380673 30 100.0 37 NNNNNNNNNN .............................. TGATAAGAGTATTAACTTAACGACATCTTTAACAAAA 3380740 30 100.0 36 NNNNNNNNNN .............................. CTTAACATTTTGATTCTTGATATTGTTCTTGCATTG 3380806 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 48 30 35 ATTTACATTCCAATATGGATCTACTCAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:73.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.90,-2.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [81,179] Score: 0.18/0.18 # # Final direction: R [0.27,0.96 Confidence: MEDIUM] >NC_016894 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 3377793 30 73.3 36 TCAATTTACA --------...................... TTTGGCGACCGTAGAAATTGTCGTTTGGGTTCTGAT 3377859 30 100.0 36 GGGTTCTGAT .............................. GATGGCGCTTGCAAGGGTAATCCCGGCGTTGGTGGT 3377925 30 100.0 36 CGTTGGTGGT .............................. CAAGGTTGAATTCCGAGAATTGGTAGCGGCGGATTA 3377991 30 100.0 37 CGGCGGATTA .............................. TGGGTGGCGTAACCCAAAGCTTAACAGACCGGATCAG 3378058 30 100.0 34 ACCGGATCAG .............................. GAAAATGAAGTCAATGCCCTAGCCCCGGCATTGC 3378122 30 100.0 36 CCGGCATTGC .............................. ATCAGTGTCGGTGCGTCTTCGGACAACGCAACTTTT 3378188 30 100.0 36 CGCAACTTTT .............................. TAATCGATTAAGTTCTTCAACAACATCATCCACGAA 3378254 30 100.0 35 CATCCACGAA .............................. CTTCTAATTGCGATACTAGGTCATAGGCCTTTTGC 3378319 30 100.0 36 GGCCTTTTGC .............................. CGGTATATGTAAAGCCGTTCGGGTGTTGGTAGCACG 3378385 30 100.0 36 TGGTAGCACG .............................. TTGCGCTTTTTGTCAACGAGATTGATGGAGAAATGA 3378451 30 100.0 36 GGAGAAATGA .............................. TTTATTATAAGAATGAACGGGAAGTTATGGAATCGT 3378517 30 100.0 35 ATGGAATCGT .............................. ACGATCAGCCCCAACACTATTAGCCTGTTCAACTG 3378582 30 100.0 35 TGTTCAACTG .............................. AAAGTCTCCCCGAAGCTGATAGCCTGATAGTTATT 3378647 30 100.0 35 GATAGTTATT .............................. GACTATAAAAATGTTGTTACTAACGTAAAGCCAAA 3378712 30 100.0 35 TAAAGCCAAA .............................. GCGCTTAAAAGCCCTCTTCAATTCAAATTTCCAAA 3378777 30 100.0 36 AATTTCCAAA .............................. TACGATTGATATACCGTTTATACTCTTTACTTTGAA 3378843 30 100.0 36 TTACTTTGAA .............................. TTGTAGTTCGTCCATTGCCATTTTAACCGCATCGGT 3378909 30 100.0 36 CCGCATCGGT .............................. TCTTAATAACATTCATCTCATCACCTCATAGAATAA 3378975 30 100.0 36 CATAGAATAA .............................. TTGTTTATTAATGATCAAGTGTTTAGCATTAAGATG 3379041 30 100.0 34 CATTAAGATG .............................. AAAATGGAGAATTAAATACAACTAGTTCACCATC 3379105 30 100.0 37 GTTCACCATC .............................. GATTATAAAGTAATGATAAATCAATCACTAAATTAAC 3379172 30 100.0 36 CTAAATTAAC .............................. CCCCCATTGCCTAATTCTCTTGCGCAAATAGCCCAA 3379238 30 100.0 36 AATAGCCCAA .............................. AAAATGGTTGAAGTCGTATTAGAAGACGTTGGCAAC 3379304 30 100.0 35 CGTTGGCAAC .............................. TAAACTAAATACCGGCAGAACAGGACGCTTCCAAA 3379369 30 100.0 35 CGCTTCCAAA .............................. ATACGTAATCTCTATCAGTAATAGTGCCATACGTT 3379434 30 100.0 36 GCCATACGTT .............................. ACAAAATAACAGATAAGCCGCTGTTCTGCTATTGTA 3379500 30 100.0 36 TGCTATTGTA .............................. GCTAGCAGAGATCAAAACCGTCGATGGACCTAGCAG 3379566 30 100.0 34 GACCTAGCAG .............................. CGTATTGCCCTGAGCTGTCCAGGTACGTAAACTT 3379630 30 100.0 35 ACGTAAACTT .............................. TCTTTTGCAAATCGATTGTCGTAACCGCTTTTAAA 3379695 30 100.0 34 CGCTTTTAAA .............................. CAACCGGACTGGCCGCGAAATATTATTGTAGTTG 3379759 30 100.0 35 ATTGTAGTTG .............................. GCATTACCAATTATTTGGAAAGCACCTGTGAAAAG 3379824 30 100.0 35 CTGTGAAAAG .............................. AAGAATTGTTTCTTTTGCTTTTCTCATGTCTTCAA 3379889 30 100.0 36 ATGTCTTCAA .............................. AAAATGGTTGAAGTCGTATTAGAAGACGTTGGCAAC 3379955 30 100.0 35 CGTTGGCAAC .............................. TCGCCATCGTCATTCCCAGTAACGACAATATCCGA 3380020 30 100.0 35 CAATATCCGA .............................. ATTTATCCCGATATTGAAGCGGTTTTCATTGATAC 3380085 30 100.0 38 TCATTGATAC .............................. TAATGCATCGATAATCTCAATGCCGGCATTAATTTTTC 3380153 30 100.0 35 TTAATTTTTC .............................. AGAAATAAATTAGTTGATGAACTCAACACGAAATA 3380218 30 100.0 36 ACACGAAATA .............................. AACAATCCGGGTAAACCGATCCGGCGTCATAACAGT 3380284 30 100.0 35 TCATAACAGT .............................. GACGATTTAATTAAAGCTATTAATGATTTTGATTC 3380349 30 100.0 36 ATTTTGATTC .............................. TAATACTGTTTATTTTTCTTTTCAGATCATTATAAG 3380415 30 100.0 37 TCATTATAAG .............................. CGCCGGGGCCTCTCCCAAGAGTAGGTCAGCAATCTTA 3380482 30 100.0 36 AGCAATCTTA .............................. CTTTTTACATCTTTTAAGTTCATTTTTATTCCTCCC 3380548 30 100.0 36 TATTCCTCCC .............................. CCCGCATTGACGCTATTATTTGTTATTTCTCTACTC 3380614 30 100.0 37 TTCTCTACTC .............................. GTTGACAAAATACGCATTGCGTACTAGAATAAACGCA 3380681 30 100.0 37 AATAAACGCA .............................. TGATAAGAGTATTAACTTAACGACATCTTTAACAAAA 3380748 30 100.0 36 TTTAACAAAA .............................. CTTAACATTTTGATTCTTGATATTGTTCTTGCATTG 3380814 30 100.0 TCTTGCATTG .............................. CCGTGCTTGT ========== ====== ====== ====== ========== ============================== 47 30 35 ATTTACATTCCAATATGGATCTACTCAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:73.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.90,-2.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [153,171] Score: 0/0.18 # # Final direction: R [0.27,0.78 Confidence: MEDIUM] >NC_016901 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3930139 28 100.0 32 NNNNNNNNNN .C...G...T.................. GAAGCGTTCGATCCGTTTGAAGATTTTAACGA 3930199 28 100.0 32 NNNNNNNNNN ............................ AAACTAGCATTCCTATAATTAACTTCTTGCGC 3930259 28 100.0 32 NNNNNNNNNN ............................ CATTAAAATCAAATTCAAGGAGGTGGACTAAA 3930319 28 100.0 32 NNNNNNNNNN ............................ AGCTTAAGGCTTCACCTGCAAAAATCTCTCAG 3930379 28 100.0 32 NNNNNNNNNN ............................ GGCAGAGGCTGAGTTATGCGCCATTTGATAAC 3930439 28 100.0 32 NNNNNNNNNN ............................ GCCAACACCATCAACACCATCCTGACCATCTA 3930499 28 100.0 32 NNNNNNNNNN ............................ TTTTGGAATATCTTTCAATGCATGGCCATTAC 3930559 28 100.0 32 NNNNNNNNNN ............................ CTCCCCCCGCGTCTAACACCCGCACCCCGTCT 3930619 28 100.0 32 NNNNNNNNNN ............................ CAAGGCGTCACCCAAAACACTGCGGCTATTCA 3930679 28 100.0 32 NNNNNNNNNN ............................ TTTAGCGTCTATCTACCGTGGCATGACCTATT 3930739 28 100.0 32 NNNNNNNNNN ............................ GATCCAACGCCAAACCATTGGCCGCGCCAATG 3930799 28 100.0 32 NNNNNNNNNN ............................ ATGGTAGGTGCGAGGCACTCGAAAGCGCCGCC 3930859 28 100.0 32 NNNNNNNNNN ............................ TTGCGCCGAACTTCAAACTGTTTTTGCCAGCT 3930919 28 100.0 32 NNNNNNNNNN ............................ AAAGACTGGTTTATTGGCGACGGTTTTAAAGT 3930979 28 100.0 32 NNNNNNNNNN ............................ TTTTCTCGCCATTGTCGTTGTCCTGTTTTTTA 3931039 28 100.0 32 NNNNNNNNNN ............................ CCATTGAGGCGGAAGTAACGACCGCCATGATC 3931099 28 100.0 32 NNNNNNNNNN ............................ GAACCAGCTTATCGCGTTTTTCGTCCGTCAGC 3931159 28 100.0 32 NNNNNNNNNN ............................ ACAGCGACCCCACGTATTTTCTCGCACTAAAT 3931219 28 100.0 32 NNNNNNNNNN ............................ TTCGCCCTTATTTATCTGCTCTGTGACGTACT 3931279 28 100.0 32 NNNNNNNNNN ............................ ACTCCTCCAAATAATCCACATATTACCACACT 3931339 28 100.0 32 NNNNNNNNNN ............................ GCGCAATACAAGGGTGATTGTGCGTTATCAAG 3931399 28 100.0 32 NNNNNNNNNN ............................ TAAACGGTTATACATTTTATACCAGCAGTTTT 3931459 28 100.0 32 NNNNNNNNNN ............................ CAAGCCATACAGTCAGGAAGTGATATTGACGA 3931519 28 100.0 32 NNNNNNNNNN ............................ AATTCACCGGCCATTTCTTATAATTCAGCTCA 3931579 28 100.0 32 NNNNNNNNNN ............................ GAGGGTCGCAAGGCTTGACTCCATGCGGGATA 3931639 28 100.0 32 NNNNNNNNNN ............................ GTAAATCGTTTTTGTCGGTTCGTGGTAATACT 3931699 28 100.0 32 NNNNNNNNNN ............................ AGGTTAGAAATAAATGAAACTCTTTTATCACC 3931759 28 100.0 32 NNNNNNNNNN ............................ TAATGTCGATGAAATATCAGCGGCTATCAAGT 3931819 28 100.0 32 NNNNNNNNNN ............................ CTGTTGACTTGTTGGTCACTTTTTTTATTACT 3931879 28 100.0 32 NNNNNNNNNN ............................ GGAATACAGTTAAGGGGTATATCAACAACAAC 3931939 28 100.0 32 NNNNNNNNNN ............................ CAGTTGGGACTTTCTCAGCGGACTCTGCAAAC 3931999 28 100.0 32 NNNNNNNNNN ............................ CACCTTAGAAAATTCATGGGGCTTCATCTTGT 3932059 28 100.0 32 NNNNNNNNNN ............................ ATGGTGCAGTAGACGTAACAACAATACTTAGA 3932119 28 100.0 32 NNNNNNNNNN ............................ AAGAGTTTCTAGAGTTAAAGGTTAATGAAAAA 3932179 28 100.0 32 NNNNNNNNNN ............................ ATTTATTTCTAACCTATCACTGCTTGGATATT 3932239 28 100.0 32 NNNNNNNNNN ............................ GCAATACTCCCAGACTGGGGCATGGGTTAACT 3932299 28 100.0 32 NNNNNNNNNN ............................ GATTTCATTTGAAACTGCTTATAATGTTGAGT 3932359 28 100.0 32 NNNNNNNNNN ............................ CGTGTTTGGGTGCGTGACTCTCCTGCTTTGAT 3932419 28 100.0 32 NNNNNNNNNN ............................ TTACAGACCAACGCCTGATACCTTGTCCGTTA 3932479 28 100.0 32 NNNNNNNNNN ............................ GTCATGCGCAGTTATTGGACAAGAACGTCGCA 3932539 28 100.0 32 NNNNNNNNNN ............................ AGTGAGACTAGCCGCCAGTTCACTATCAGTAA 3932599 28 100.0 32 NNNNNNNNNN ............................ TTCACCCTTATTTATCTGCTCTGTGACGTACT 3932659 28 100.0 32 NNNNNNNNNN ............................ AGTTCTTCACGGTCTACCCCAGCCATATCGTT 3932719 28 100.0 32 NNNNNNNNNN ............................ GAAACTGTGACTGAAGAGTTTCTAGAGTTAAA 3932779 28 100.0 32 NNNNNNNNNN ............................ AATATTGGTTCGGCCATGACTGTTGACTTGTT 3932839 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 46 28 32 TTTCTAAGCCGCCTGTGCGGCGGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-9.50,-10.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [195,132] Score: 0/0.18 # # Final direction: R [0,1.42 Confidence: HIGH] >NC_016906 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3982226 36 100.0 37 NNNNNNNNNN CTCAA.TG.A.C..G..G.C................ GCGGGTGAGCGGTAACGCGTCCACCCAGTTCTTTGGA 3982299 36 100.0 36 NNNNNNNNNN C..CA.TGAA.C.TG.C.ATGA.G.C.......... CGGCCCATCGACCTGCGCAACATGCGGAACCTGCTC 3982371 36 100.0 38 NNNNNNNNNN .................................... CGGGGTGTCGAGAGCTCCTTGGCCTCGGACGTCAGAAC 3982445 36 100.0 41 NNNNNNNNNN ...................A...............A CCGACCGGCGCCCCGTCCAGCGGTGCCGACGCACCGATCGG 3982522 36 100.0 35 NNNNNNNNNN C................................... GCATGGTCAGCTCGATGCCGGGCACCGAATCCCTT 3982593 36 100.0 38 NNNNNNNNNN ..CT................................ TCGACGTCCGAGAAAGTCGCTCCACGTCGACCGGTCTC 3982667 36 100.0 40 NNNNNNNNNN ..CT................................ CGGTGATCGCCAGCCAGTCCGACTTCGACGACCACTCCGG 3982743 36 100.0 36 NNNNNNNNNN ..CT................................ GTCGCCAAATGTCGACGTGTGCCAGATGTCCGTGAT 3982815 36 100.0 37 NNNNNNNNNN .................................... ACGCGCGACTACTCGCTGCACAGGCTGCGATGCATTC 3982888 36 100.0 39 NNNNNNNNNN .................................... CTGGTTCGGCCGCAAGGGCGGCCACGCAAAAGACTCGGT 3982963 36 100.0 36 NNNNNNNNNN .................................... TCGGCCGGTCACGCTGGCCGGTTACCGGCAGGCACT 3983035 36 100.0 36 NNNNNNNNNN .................................... GCGATGAAGCGGTGCAAGCACCCCCGGACACGGATC 3983107 36 100.0 38 NNNNNNNNNN .................................... TTCACACCCTCGGCGTGCGCCTTCGCCTTCAGGTCGGC 3983181 36 100.0 37 NNNNNNNNNN .................................... GTCGTACGTTCCGCTGCTCGTGGAAGGTCACACCCTT 3983254 36 100.0 38 NNNNNNNNNN .................................... TCACCGCGAATGTCACCGGCACCAGTTCCCGGACCACC 3983328 36 100.0 38 NNNNNNNNNN .................................... CCGCGAACGGCCCCCTGCGGGTCAAGGTGGACCGACAG 3983402 36 100.0 39 NNNNNNNNNN .................................... CCGCATTGCAATCGTTGATCAGACCATGCCGCCACGTGA 3983477 36 100.0 38 NNNNNNNNNN .................................... GATCACTCGCCGTCGACTGTGATCTCTTCGTCTTCCTC 3983551 36 100.0 37 NNNNNNNNNN .................................... CCCGACGCCGCGTGACGCGGACACGAAACACCAACCC 3983624 36 100.0 39 NNNNNNNNNN .................................... CTGGAGGGCGGGCGGCTGCGTCCGGTTGCGCAGTTCGTA 3983699 36 100.0 37 NNNNNNNNNN .................................... TCTGTGCTGCCTCGTCAGCCGACAATCCGGTGTTGCG 3983772 36 100.0 35 NNNNNNNNNN .................................... CATTTGATGCGCGCCGTGGCTTGCAGGATGTCCCC 3983843 36 100.0 38 NNNNNNNNNN .................................... TTCGTCAATCTCTCCCATAATGGCCGCCAAAACCACCG 3983917 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 24 36 37 GCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [9,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.40,-12.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [32-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [41.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [135,177] Score: 0/0.18 # # Final direction: R [0.64,0.78 Confidence: LOW] >NC_016912 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1734115 36 100.0 23 NNNNNNNNNN .................................... AGCTGGCCAATAGTCAGCTTTCA 1734174 36 100.0 19 NNNNNNNNNN .................................... GAATTTCGAAAAGAAATTC 1734229 36 100.0 23 NNNNNNNNNN TAC.GACAATGCAA.TT.GCG............... AGCTGGCCAATAGTCAGCTTTCA 1734288 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 4 36 21 ATAATGTGCAAGTTGGGGTAAGGGCCCCAACACAGA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [12,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-13.70,-11.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [50.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [353,305] Score: 0/0.18 # # Final direction: F [1.15,0.27 Confidence: MEDIUM] >NC_016912 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 2206999 23 100.0 33 NNNNNNNNNN ....................... CATTATTGTATGCTGACTTTTCGTCACCTTCTG 2207055 23 100.0 36 NNNNNNNNNN .............TTCC.CAA.T TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA 2207114 23 100.0 33 NNNNNNNNNN ....................... CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG 2207170 23 100.0 1 NNNNNNNNNN .....................T. NNNNNNNNNN ========== ====== ====== ====== ========== ======================= 4 23 34 TGTTGGGGCCCCGCCAACTTGCA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.90,-2.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [357,143] Score: 0.18/0.18 # # Final direction: R [0.55,0.78 Confidence: LOW] >NC_016928 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================== ====== 1149386 18 100.0 37 TTCAATTATA .................. AGAATTTCAAAAAGAAATTCTACAGACAATGCAAGTT 1149441 18 94.4 38 AATGCAAGTT ...............C.. AAGCTGACGAAAAATCAGCTTACAATAATGTGCAAGTT 1149497 18 100.0 38 TGTGCAAGTT .................. AAGCTGGCAGAAAGTCAGCTTACAATAACGTGCAAGTT 1149553 18 94.4 40 CGTGCAAGTT ...............C.. AAGCTGGCAGAAAGTCAGCTTACAATAACGTGCAAGTTGG 1149611 18 94.4 TGCAAGTTGG ..T............... TGAAATTG ========== ====== ====== ====== ========== ================== 5 18 38 GGCGGGGCCCCAACATAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [4,1] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [157,275] Score: 0/0.18 # # Final direction: F [1.05,0 Confidence: HIGH] >NC_016912 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 859209 30 100.0 26 NNNNNNNNNN .............................. CGGGGCCCCAACACAGAGGCTGGCGG 859265 30 100.0 28 NNNNNNNNNN .............................. GGTGGAGCCCCGACACAGAGAAATTAGC 859323 30 100.0 26 NNNNNNNNNN TCCTCA.TT.CTAC.G.CAA.......... CGGGGCCCCAACACAGAAGCTGGCGA 859379 30 100.0 53 NNNNNNNNNN .............................. GGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAA 859462 30 100.0 1 NNNNNNNNNN ....A....AGTAGGATAAT.T...T.... NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 5 30 33 AAAGTCAGCTTACAATAGTGTGCAAGTTGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.50,-1.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [152,71] Score: 0.18/0.18 # # Final direction: F [0.96,0.27 Confidence: MEDIUM] >NC_016929 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================== ====== 414676 26 100.0 19 NNNNNNNNNN .......................... ACCGCCGCCGCCGCCACCG 414721 26 100.0 31 NNNNNNNNNN .......................... GCCACCGCCGCCGCCACCGCCGCCGCCACCG 414778 26 100.0 1 NNNNNNNNNN .......................... NNNNNNNNNN ========== ====== ====== ====== ========== ========================== 3 26 25 CCACCTTTACCGCAAAATAATATGCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:57.69%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [1172,832] Score: 0/0.18 # # Final direction: F [0.27,0 Confidence: MEDIUM] >NC_016934 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3125410 36 100.0 38 CGCCGGGGCA .................................... CTATCCGCGGGAAGAGATCACGAATCCGGCGTCGAAGG 3125484 36 100.0 38 GCGTCGAAGG .................................... ATGCTGAGCTGAGGCGCCGGATGATGGTGGTGCTGAAG 3125558 36 100.0 GGTGCTGAAG .................................... TGACAGGGTGCGGTGGTCGCTGATCGGCTCCCCGA ========== ====== ====== ====== ========== ==================================== 3 36 38 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [28.3-28.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [1348,3158] Score: 0.18/0.18 # # Final direction: R [0,0.92 Confidence: HIGH] >NC_016934 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3127146 37 100.0 40 NNNNNNNNNN ..........T.........................G TGATCTTCTCTCCTGGCGAGGTCAAGGAAATCGATGTGGA 3127223 37 100.0 35 NNNNNNNNNN ..................................... ACCAGGATCAGCGCCAAGCCAGTTAGCGCAATCCA 3127295 37 100.0 35 NNNNNNNNNN ..................................... TCCCGGACCATCTGCAGCTCGCCCGGGTCCATGCG 3127367 37 100.0 36 NNNNNNNNNN ..................................... GGAGTCATCCGCGCGGGCCGGCGCGATTGTTGCCGG 3127440 37 100.0 36 NNNNNNNNNN ........................T..GTCTGACGA. TGGCGATTTACGACGCTGACGGGAACTCGTGCGAAT 3127513 37 100.0 24 NNNNNNNNNN ................................TCCG. GAAATTCACTGCGCGTTATTCAAG 3127574 37 100.0 42 NNNNNNNNNN ........................T..GTCTGACGA. CCGAGCCGACCATCCGCATCACACCGAAAAGGGTTGGCGCAA 3127653 37 100.0 1 NNNNNNNNNN ....................................A NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 8 37 35 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [2-25] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [18.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [3084,1062] Score: 0.18/0.18 # # Final direction: R [0.59,1.01 Confidence: LOW] >NC_016935 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 3237103 20 100.0 25 NNNNNNNNNN .................... TGTCCCGTTTCAATCCTTCCCTTTA 3237148 20 100.0 26 NNNNNNNNNN .................... GCTTTCGGGGAGGACGCTCGCTGCGA 3237194 20 100.0 27 NNNNNNNNNN .................... TTTATTGGATGTATTCGCTCCGTGCGA 3237241 20 100.0 35 NNNNNNNNNN ......CC..C......... TGGTTGTACCTGGATGCCGCTGGAAAAAAGCCTGA 3237296 20 100.0 1 NNNNNNNNNN .................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================== 5 20 28 ATCTGTTGGCTAGTACAACC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [785,582] Score: 0/0.18 # # Final direction: F [0.41,0.27 Confidence: LOW] >NC_016935 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 3288859 19 100.0 43 NNNNNNNNNN ........GG......... AGCGGCGCCGCATCGAGCTTTCAGCCGCTGCTTTACTCCTTCG 3288921 19 100.0 32 NNNNNNNNNN ................C.. CGGAGCGGCAAATGCAGCGAATCAGCCGGTTT 3288972 19 100.0 43 NNNNNNNNNN ...G............... AGCGGCGCCGCATCGAGCCTTCAGCCGCTGCTTTACTCCTTCG 3289034 19 100.0 32 NNNNNNNNNN ................... GGGAGCGGCAAATGCAGCGAATCAGCCAGTTT 3289085 19 100.0 43 NNNNNNNNNN ...GT.............. AGCGGCGCCGCATTGAGGCTTCAGCCGCTGCTTTGCTCCCTCG 3289147 19 100.0 32 NNNNNNNNNN ....T...........C.. CGGAGCGGCAAATGCAGCGAAGCAGCCGGTTT 3289198 19 100.0 43 NNNNNNNNNN ...G............... AGCGGCGCCGCATTGAGGCTTCAGCCGCTGCTTTGCTCCCTCG 3289260 19 100.0 32 NNNNNNNNNN ................... GGGAGCGGCAAATGCAGCGAATAAACCGGTTT 3289311 19 100.0 43 NNNNNNNNNN .............T..... AGCGGCACCGCATCGAGCCGTCAGCCGCTGCTTTACTCCTTCG 3289373 19 100.0 31 NNNNNNNNNN ................... GGGAGCGGCAAATGCAGCGAATCAGCGGTTT 3289423 19 100.0 1 NNNNNNNNNN ...G..A.....G...C.. NNNNNNNNNN ========== ====== ====== ====== ========== =================== 11 19 37 AACACGGAAAATCCGTGTT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:57.89%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.30,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: F [4-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [31.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [48,457] Score: 0.18/0.18 # # Final direction: R [0.41,0.45 Confidence: LOW] >NC_016938 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================= ====== 420406 33 100.0 33 CATTTTCGCG ................................. ACTAGTCTATAAGGACGTTTGCTGAAACATGGT 420472 33 100.0 35 GAAACATGGT ................................. ATTTTCCTTAACTCCTGTGATTGTATCTTTATTAA 420540 33 100.0 34 TCTTTATTAA ................................. AGTGTTGGTGGTGCTAGAATAAATAAAGATGGAG 420607 33 100.0 34 AAAGATGGAG ................................. CCTCGTCTAAGGCAGTATCTACTTTAGAGCGTAA 420674 33 100.0 36 TAGAGCGTAA ................................. GATAAATCCATACTCTGAGCGGAAAGCATAAGAAAA 420743 33 100.0 33 CATAAGAAAA ................................. ATGTCATGTGTTAATGTAAAATCACCTGTTTTT 420809 33 100.0 36 ACCTGTTTTT ................................. CGAAAATCAAGGGTCGTTGATTCTACTAACATGGAA 420878 33 100.0 35 TAACATGGAA ................................. CCCTGTGTAACCGCATAGGTGTGTTCTACGAAATG 420946 33 100.0 36 CTACGAAATG ................................. TGATCCTGTTTGTAAGTCATATTCGTAGACTTTATG 421015 33 100.0 38 AGACTTTATG ................................. GTAGTGCTACTAAACTGCGTAAAAATTTTGAGCGTTTG 421086 33 100.0 37 TGAGCGTTTG ................................. ACCAAGTATTGAAACAATGTTTGTCACAGAAAGTGGA 421156 33 100.0 35 AGAAAGTGGA ................................. TTGTGTGCGGTTCTGCTGTTTTCGGTTGTCAAAGC 421224 33 100.0 33 TTGTCAAAGC ................................. GCCGCCTCAATAAAGAATGTTAGGCGCATAAAC 421290 33 93.9 GCGCATAAAC ............................T...A ATTCACCGT ========== ====== ====== ====== ========== ================================= 14 33 35 GTCTCACTCTTCATAGAGTGAGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.61%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [83.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [161,539] Score: 0.18/0.18 # # Final direction: F [5.55,0.18 Confidence: HIGH] >NC_016935 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================== ====== 6266467 21 100.0 30 NNNNNNNNNN ........T.AGCA..T.... TTCCAGGCAGATGGACCGTTGCCGGGCCGA 6266518 21 100.0 41 NNNNNNNNNN ........A...A........ TCGAGCTTCCGGTTGGGCACTTGAGCCCCCAACAAGCAGAT 6266580 21 100.0 31 NNNNNNNNNN ................T.... ATCCTGCGCTTTCGGCCAGCCACCGCTTCGA 6266632 21 100.0 41 NNNNNNNNNN ..................... GCGAGCTTCCGGTTTGGCACTTGAGCCCTCAGCAAGCGGAT 6266694 21 100.0 1 NNNNNNNNNN ..................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================== 5 21 35 TAACACGGGTTTTCCGCGTTA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.38%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.30,-2.30] Score: 0/0.37 # Array degeneracy analysis suggestion: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [35.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [180,197] Score: 0/0.18 # # Final direction: R [0,0.68 Confidence: HIGH] >NC_016940 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 141704 36 100.0 34 AACGGATGTC .................................... ACGAGATGGAACGAGGACGACCTAAGCGGTCGAG 141774 36 100.0 35 AGCGGTCGAG .................................... TTCAAGTGGCGTTTTGCCTAAGTTAGACGCAAAAA 141845 36 100.0 34 GACGCAAAAA .................................... ATTTTTAAATATTTAATTGAGGGAGGGGGGGGAG 141915 36 100.0 36 GGGGGGGGAG .................................... GTCCCGAATGATGTGCGTACCAGCGTGGATTGTGAC 141987 36 100.0 34 GGATTGTGAC .................................... AAGGAGAATGGGTTGCTCCTAAATGGATGGTAGA 142057 36 100.0 35 GGATGGTAGA .................................... TTCAAAAAATCGCTCACTATGGGCGATATAAAACA 142128 36 100.0 37 ATATAAAACA .................................... TAGCCATTGGGCCAATACCGAAATAGAGGCTAAAAAA 142201 36 100.0 35 GGCTAAAAAA .................................... GGGATAAGATCCCTGCAGTTGGAGTGTGGAACTGT 142272 36 100.0 35 GTGGAACTGT .................................... TGCATTATATTAAACCCTTAAAGCTGTCTAAGGCA 142343 36 100.0 37 GTCTAAGGCA .................................... TATGCTAAGGCTAGATTATAAATAATCCAATGCCACG 142416 36 100.0 36 CAATGCCACG .................................... GAAGATGAGAAGTCGAACTTCTCTCTCAACGTGGAG 142488 36 100.0 35 CAACGTGGAG .................................... TTAGGAGGGTCTATTGAAGTAACCCCTAAATAGTC 142559 36 100.0 38 CTAAATAGTC .................................... TCAATGGCGAGCAGGCATTCATGCAGCTCCTCCAGCCG 142633 36 100.0 38 CCTCCAGCCG .................................... TCAATGGCGAGCAGGCATTCATGCAGCTCCTCCAGCCG 142707 36 100.0 37 CCTCCAGCCG .................................... CAGTTGTACGTCTATTGGATACAGCCAACATGTAGAA 142780 36 100.0 35 ACATGTAGAA .................................... CTAAAATCACAAATCTTCCGCCTTTTACTGGATAG 142851 36 100.0 35 TACTGGATAG .................................... ATCAATCCAGAGCCTTCTACTGCATTCGCATAGTA 142922 36 100.0 36 TCGCATAGTA .................................... AAGCCCATTGCCTCACTCCTGAAATGGTTCAGGAGT 142994 36 100.0 36 GTTCAGGAGT .................................... TAGATGCGTATTTCTCTTATTGGAGGGAATTTGCTA 143066 36 97.2 34 GAATTTGCTA ........................A........... AATTACCAACCTAAGCTAAAAATAATGACACGAT 143136 36 97.2 33 ATGACACGAT ........................A........... CAAACCAAAGCAGATCAAAGCAGAAATGACACT 143205 36 97.2 34 AAATGACACT ........................A........... AGATATGTAGAAGGGGGGAAAAGCAACCTCTATT 143275 36 97.2 36 AACCTCTATT ........................A........... CTAAAACGGGCCGTTTTATGGCCCAAATTATGGCTA 143347 36 97.2 36 ATTATGGCTA ........................A........... TTTTAAAATGGGGGGCAACCTCGCAGGCTTTCAAAG 143419 36 97.2 34 GCTTTCAAAG ........................A........... AGGCTCAGTGCGTTGCTTATGCAGGTATGGACAA 143489 36 97.2 34 GTATGGACAA ........................A........... CCTCCACTTTGAGGTTTTTGATAAGATCTCTTAT 143559 36 97.2 35 GATCTCTTAT ........................A........... TAATACGTGAGTCTTGTGGAATCCCCCTAGAAGCT 143630 36 97.2 35 CCTAGAAGCT ........................A........... CCCTAATCAAGGGGTTCAGCGTCTTCTTTAAAGAG 143701 36 97.2 36 CTTTAAAGAG ........................A........... TTCTTCAGCTCTATTGTTAAATCCACCTCCAAAGTT 143773 36 97.2 36 CTCCAAAGTT ........................A........... ATTTCAATATTATCATCATGGTCTAAAGCAATAACA 143845 36 97.2 36 AGCAATAACA ........................A........... TGTTTGAATACTTCAATAGACTACTGTTTGAAGGAA 143917 36 97.2 34 TTTGAAGGAA ........................A........... GGTGATGCCACTGATGGTGGTGTTATCGGGGAAA 143987 36 97.2 35 ATCGGGGAAA ........................A........... ATTTTATTATGTCATTTTTTGATGAAAAAGAAAAG 144058 36 97.2 34 AAAAGAAAAG ........................A........... ATAAAACCCATTCTCTTTTAATAATCCACTTATT 144128 36 97.2 33 TCCACTTATT ........................A........... AGTAGAGGTTTTATTAGCATATAAATCATTTCA 144197 36 97.2 33 AATCATTTCA ........................A........... TTTATAGACATATACTCATCGGTCTCAATACGT 144266 36 97.2 35 CTCAATACGT ........................A........... ACTATTTCACCACTTAAAATGTAATCAATACCATT 144337 36 97.2 35 CAATACCATT ........................A........... AGGAGAAGGGGTAGTTTCAGGCTGGAGCTGCTCCA 144408 36 97.2 34 AGCTGCTCCA ........................A........... CTGATTCGTACTCCAGAAGAATCTCCGCAAAGAT 144478 36 97.2 34 CCGCAAAGAT ........................A........... AATGGATGTAATGTACAAGCAAGCAGATGACGAA 144548 36 97.2 36 AGATGACGAA ........................A........... AGCTTCCCTGCCAACTCCCACGCCTCAGCGGAGAGA 144620 36 97.2 34 AGCGGAGAGA ........................A........... ACAACTAAAATTTCTTTTAGAACCTTTAAAAACT 144690 36 97.2 36 TTTAAAAACT ........................A........... TCAGAGCGAGTATAAACAGGCGTTTAGGCTCTGAGC 144762 36 97.2 35 GGCTCTGAGC ........................A........... CAGAACAATGTAGTGTCTACTACGATAGAATTGAT 144833 36 97.2 34 TAGAATTGAT ........................A........... AAAAAATGATTTCATTCAAAAATTTCGAGGAATT 144903 36 97.2 35 TCGAGGAATT ........................A........... AACCTCTCTCCTCATTATTAGGAGAGGGGTAAAAC 144974 36 97.2 35 GGGGTAAAAC ........................A........... ATAAAACAACCCTCAGATTCATTATGACATCTGAG 145045 36 100.0 37 GACATCTGAG .................................... ACTTAATTATGTTGACATCTGTGATTATATTGAAGAA 145118 36 97.2 TATTGAAGAA ........................A........... TAGACAACGT ========== ====== ====== ====== ========== ==================================== 49 36 35 GTTTCAATGCTGCTTCGCCTGCAATGGGTTTAGTAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.70,-2.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [363,8756] Score: 0.18/0.18 # # Final direction: R [0.78,4.68 Confidence: HIGH] >NC_016940 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 146014 36 100.0 34 ATTGGATACA .................................... TAGACAGTTTTAAGTCAAACCCAAAAACTTTAGA 146084 36 100.0 34 AAACTTTAGA .................................... AACCTGTGAAAAGAATCTTGATTACTTTCGGAGA 146154 36 100.0 35 CTTTCGGAGA .................................... GACTGTAAAGACGAACTCAATGCAAATTAGAGAAA 146225 36 100.0 35 ATTAGAGAAA .................................... CTCCTCTTTTGACAGCTTCTGTTAATATGTCAGCT 146296 36 100.0 34 TATGTCAGCT .................................... GCTCTAACGATGGATCCCTTGTATTGCCCATAAT 146366 36 100.0 34 TGCCCATAAT .................................... TTCTAAGAAATCTTCTGGTAGATCACTACATGTT 146436 36 100.0 35 ACTACATGTT .................................... TGGTGCTTACCGAAAAAAAGAGGCCTACCGTGAAT 146507 36 100.0 34 TACCGTGAAT .................................... CTACTACTTTGTTTTTTAATTCTTCTAATTCACG 146577 36 100.0 34 CTAATTCACG .................................... TAGAAACTATATCTGTTGAAATTTTGAATGAATA 146647 36 100.0 34 TGAATGAATA .................................... GTAGCATCTATTTTCGGATTGAGACCTCAAGGAG 146717 36 100.0 35 CCTCAAGGAG .................................... CGAGTAAATACTCGCTTAGGATCCGACTTACGCAA 146788 36 100.0 34 ACTTACGCAA .................................... GTAGCATCTATTTTCGGATTGAGACCTCAAGGAG 146858 36 100.0 35 CCTCAAGGAG .................................... CTTGAGCCCTTTTAGTTCTTAAGGCATTGATAGAG 146929 36 100.0 36 ATTGATAGAG .................................... TTAAAGTAGCTTCAATTCTTTTAATTTCTTTTTGAA 147001 36 100.0 36 TCTTTTTGAA .................................... AACTTTTTTTTGTCAGACACCCCCGGGGGTCAAAAA 147073 36 100.0 35 GGGTCAAAAA .................................... AGACACCAACTCATCGCAGCCCTCTATCTTCATCT 147144 36 100.0 35 ATCTTCATCT .................................... AGCCTAAATGGCTGTTTATACTCGCTCAGTCGAGT 147215 36 100.0 35 TCAGTCGAGT .................................... ATTGTACCGAGGGAGCATTTCTCTCTCGGTCACTG 147286 36 100.0 35 TCGGTCACTG .................................... AGACTGGTTCAGTAAACTCCCTGAAGAAGAACGTG 147357 36 100.0 34 GAAGAACGTG .................................... GCTTTCGTTTGCTGTAGCCCAGTACATGTCTGAG 147427 36 100.0 36 CATGTCTGAG .................................... TCGTAGGGAGGCCAATTTGGAGATGATACGCCTTTT 147499 36 100.0 36 TACGCCTTTT .................................... ACTCCCATCGTTTTCGCATCAAAGTTCTCTAGCGAT 147571 36 100.0 34 CTCTAGCGAT .................................... TTAAAACGCTCTGAAATAAGTAGATTTCTCATGA 147641 36 100.0 35 TTTCTCATGA .................................... TACACTATAGTGGATTTCCACTCTTCTGTCGAGAG 147712 36 100.0 36 CTGTCGAGAG .................................... TCCCCGACGAATTTCGAGGAAAAGAGCTTTCTGACG 147784 36 100.0 36 CTTTCTGACG .................................... TCCCCGACGAATTTCGAGGAAAAGAGCTTTCTGACG 147856 36 100.0 34 CTTTCTGACG .................................... TCTGCAACAAGGAAGGGCGGCTTGCTCTTAAACA 147926 36 100.0 35 CTCTTAAACA .................................... TCAGGTTTTTCCAAACCAAGCTAGCAGCACCTGTA 147997 36 100.0 36 AGCACCTGTA .................................... TCGGCCCGGTACATTTCTAGCAAACATCTTTTAAAA 148069 36 100.0 35 TCTTTTAAAA .................................... TTTCTCGGATCCGTGAGCTATTGCAGGAAAAAAAT 148140 36 100.0 35 GGAAAAAAAT .................................... TCAGGTTTTTCCAAACCAAGCTAGCAGCACCTGTA 148211 36 100.0 36 AGCACCTGTA .................................... TCGGCCCGGTACATTTCTAGCAAACATCTTTTAAAA 148283 36 100.0 35 TCTTTTAAAA .................................... TTTCTCGGATCCGTGAGCTATTGCAGGAAAAAAAT 148354 36 100.0 36 GGAAAAAAAT .................................... AGTTTGACTCCGATATTAATAGACTTACAGATGACT 148426 36 100.0 35 ACAGATGACT .................................... ATACGCAACTCACAGCTTGAGTAATCTCGTACAAC 148497 36 100.0 36 CTCGTACAAC .................................... GCTATTACGATTTCAAAAATGGCGTGTTCTACCACG 148569 36 100.0 35 TTCTACCACG .................................... TTTCCTAGGTTTTTTTATTTTTTTCTTGCAAAATG 148640 36 100.0 35 TTGCAAAATG .................................... AAATTCTTCGTTAAACATAGCTTCGTTTTAAGGTT 148711 36 100.0 33 TTTTAAGGTT .................................... TAACTTGGACTACCCACTAGAATTAGATGAGTT 148780 36 100.0 34 TAGATGAGTT .................................... GCTACCGTTTATGAATGTCACGGTTAAGCTTGTT 148850 36 100.0 35 TAAGCTTGTT .................................... AACTATTGTATTGCTGTGCCAACTTGAAAAGAGCA 148921 36 100.0 33 GAAAAGAGCA .................................... GCCCTAAAGCCAGCAAGGCTAAATTCCTAAGCC 148990 36 100.0 34 TTCCTAAGCC .................................... CGAGAGTTCGACCGCGAGGTCGAGTTCATTGCCA 149060 36 100.0 34 TTCATTGCCA .................................... TCAAAGCCTTCTTCTGGACCACAAGTCTTGAGAA 149130 36 100.0 34 GTCTTGAGAA .................................... TTTAAGACCGAACACGAGGCCTTTATTTTGGGCC 149200 36 100.0 34 ATTTTGGGCC .................................... AGGTGAAGGAATGTCTCTCATTAAGAACTATAAA 149270 36 100.0 33 GAACTATAAA .................................... TCAATGGCAGAATCTGAAACTTTGAATAAGACT 149339 36 100.0 33 GAATAAGACT .................................... TTATCTGATCTCAGTTGAGAACAAAATAGAATA 149408 36 100.0 34 AAATAGAATA .................................... GAAAGATGATCTGGAGGAATACTTCTCCAGCATC 149478 36 100.0 34 CTCCAGCATC .................................... TCTTTAAATAACTCGAAAGGTATTTCTGGAGATA 149548 36 100.0 35 TCTGGAGATA .................................... CTACCTTTCTTATATTGTACTGCATATTTCTCATA 149619 36 100.0 35 ATTTCTCATA .................................... AGCTTCTGGATAAAAAAGGAAAAAGAAAAGAAGCT 149690 36 100.0 34 AAAAGAAGCT .................................... TCTACGATCAGAAGCTTTGTTGCTTCTGATAACA 149760 36 100.0 35 TCTGATAACA .................................... ACAGCAACTGACTTTTTAAATGGAGCATTTGTAGT 149831 36 100.0 36 CATTTGTAGT .................................... TCGGCCCGGTACATTTCTAGCAAACATCTTTTAAAA 149903 36 100.0 36 TCTTTTAAAA .................................... ATTATAATAATGTATAAATTTTAGGTGAACTAGAAT 149975 36 100.0 33 GAACTAGAAT .................................... GGCCGCCAGCTGATCAATAAATTTTTTAAAGCG 150044 36 100.0 35 TTTTAAAGCG .................................... CTTGGACCTATACCAAGATGGCACACTTGCCAGCC 150115 36 100.0 36 CTTGCCAGCC .................................... TATGTATTTTTTTAAGTTAATTATATGAAATTAACA 150187 36 100.0 34 GAAATTAACA .................................... AAGAATTTGGTCAAACCAAATCTCTGTTCTGGAT 150257 36 100.0 34 TGTTCTGGAT .................................... TCGAGCTCTTTGATTGCTTCTACTGTGAGACGTA 150327 36 100.0 35 GTGAGACGTA .................................... AAAGTACATTTAGATACCTTAATTGAGGCTGACAG 150398 36 100.0 36 AGGCTGACAG .................................... AAATAATATCATTACACAAACTAATGTAAATATATT 150470 36 100.0 34 TAAATATATT .................................... ACACAATTTTCAGTGGAAGTTATTTTTCTGAATT 150540 36 100.0 35 TTTCTGAATT .................................... CAGAGTCAGGGACTGGAAACCAATGCTACCAGGTT 150611 36 100.0 34 CTACCAGGTT .................................... TCGATATGGACCGCGGCTATGCCGTTTGGTTCTA 150681 36 100.0 35 TTTGGTTCTA .................................... CTTGCTCGAAGCGGTAATTTGGGTTATCCTGCAAA 150752 36 100.0 35 ATCCTGCAAA .................................... ACGCTCTGTTAAGAGAAAAGGTTGAAAAACAACCT 150823 36 100.0 35 AAAACAACCT .................................... TTCTGGCAAGAACCGCCTTGTTGCCAAGGTAAACA 150894 36 100.0 34 AAGGTAAACA .................................... TCTCAAATTCTTTGAACTTCTTACCCATAATAAC 150964 36 100.0 34 CCATAATAAC .................................... GGAGTTTCAACCCCAAAACCGAGCAAATAAAACA 151034 36 100.0 36 AAATAAAACA .................................... TAGTTTCGGTAACCACGGCGGGTTTTGTTCTTTCGA 151106 36 100.0 36 GTTCTTTCGA .................................... TTGTGTAGGTACGTATGTCTGGAGAGACAATAAACA 151178 36 100.0 34 ACAATAAACA .................................... ACAAAGCTACAAAGTAAATAAGGAAGTATACTTA 151248 36 100.0 35 AGTATACTTA .................................... TTTTTTAGGTAGGTATTTAACAATAAGAGTGCACT 151319 36 100.0 35 AGAGTGCACT .................................... GCACTTGACATAATCTCATTACTAGCCATTCTATA 151390 36 100.0 34 CCATTCTATA .................................... TGTACTTCCTGGAGGACCTGATGTAAGCCTTGCT 151460 36 100.0 35 AAGCCTTGCT .................................... ACGTCATTTTTAGTTAGGGTTTCGGTAAAAGAACC 151531 36 100.0 34 TAAAAGAACC .................................... GAGCCGTCTTCTTCGGGCTCTACTAAACTTACAA 151601 36 100.0 34 AAACTTACAA .................................... ATAGAGTTAAAAAAGTAGTAAATGAATACATATA 151671 36 100.0 37 AATACATATA .................................... AATTTGGTTTCGAAGTCGGCTGGGCTTAAATATTCTA 151744 36 100.0 35 AAATATTCTA .................................... TCCGCTTTCTCGAATTATAGAGTCCCACAAAGGGA 151815 36 100.0 33 CACAAAGGGA .................................... TCAGCTGCTTGAAGTAGCTTAACAATCTGGGCT 151884 36 100.0 35 AATCTGGGCT .................................... GAAACAGAACTAGAAAATCTAGGGGAGATTGAAGA 151955 36 100.0 36 AGATTGAAGA .................................... AGGCGCAAAGCCCGAAAATACAAGGAGCCTGCAGTA 152027 36 100.0 35 GCCTGCAGTA .................................... TATACAGTATGGTCAACAGGCCACCTGCCTATGGG 152098 36 100.0 36 TGCCTATGGG .................................... TAGAAATGACTTCAAAGCTCTCTTAAAACAAGAGCT 152170 36 100.0 34 AACAAGAGCT .................................... TGCACACGAGTACGGATAAGGAGCTGGAAGAACT 152240 36 100.0 35 TGGAAGAACT .................................... GTTTTTAGGGCCATAGCCATCGCTTCGGCAAGGGG 152311 36 100.0 34 CGGCAAGGGG .................................... ACATTTATAAACTTATAATATTCTAAAGCTGTCA 152381 36 100.0 35 AAAGCTGTCA .................................... GAACTATTCCTCCCCACTACATTGATGGAGAGGAT 152452 36 100.0 36 TGGAGAGGAT .................................... AAACTTTCCATGTGTAGCTTCTACACATTCGAAGTA 152524 36 100.0 36 ATTCGAAGTA .................................... TTGATAAGATTGCTGCTGAGATTTCAATGAAGAAAT 152596 36 100.0 35 ATGAAGAAAT .................................... TATATTTAATTAACTCTAAATTTATTACATTATGA 152667 36 100.0 38 TACATTATGA .................................... TTGAGATGCGGATTTCATAGACTTATGAATTTATAATA 152741 36 100.0 35 ATTTATAATA .................................... AGGGCTGGGAACTCATATGAGAGTTTGCCAGGAAT 152812 36 100.0 33 TGCCAGGAAT .................................... AAAAACAAAAGAGGCCCTAGAGGGCTCTTTTAA 152881 36 100.0 34 GCTCTTTTAA .................................... AAAAGGGTCAAAGGTTGCCAGCTTCCACGCTGAA 152951 36 100.0 35 CCACGCTGAA .................................... TTTTTATACAGAGACTTCTGCTTCTTGGCAGTGGC 153022 36 100.0 34 TGGCAGTGGC .................................... GCAAAGCATGGTAATGCCCGAAATTAAAATTGAG 153092 36 100.0 35 TAAAATTGAG .................................... CCATAACAGGTCAGTCAAGTGGGAAGCCTCTGCTA 153163 36 100.0 35 GCCTCTGCTA .................................... ATAGAATGGGCTGAAGGCGAAAAGCTAAAAGTGAC 153234 36 100.0 34 TAAAAGTGAC .................................... TCCTGTGGGGTCGTTGGTTGTCCGCTCAAGTCGG 153304 36 100.0 35 CTCAAGTCGG .................................... TGGCCAATATTTACCAAACCTACTAACTGAGAAAT 153375 36 100.0 ACTGAGAAAT .................................... AGCAAAACTA ========== ====== ====== ====== ========== ==================================== 105 36 34 GTTTCAATGCTGCTTCGCCTGCAAAGGGTTTAGTAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.30,-2.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [4673,499] Score: 0.18/0.18 # # Final direction: R [0.55,4.77 Confidence: HIGH] >NC_016940 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3742956 36 100.0 34 NNNNNNNNNN .................................... GATAGCCAATTCGAGAACGTCAAAAAGAACGAAG 3743026 36 100.0 36 NNNNNNNNNN .................................... GGGACCAAGCTGTAAATAGTCATACCCTCTTCTACT 3743098 36 100.0 35 NNNNNNNNNN .................................... TATTACCCCCTACTCTAAGGAACATAAGCGTTTTG 3743169 36 100.0 35 NNNNNNNNNN .................................... GGCCTTGACTCGATTTGACGCTGAAACGGACGCTA 3743240 36 100.0 33 NNNNNNNNNN .................................... CATTTCAACATCCCTAGCCCCATAGGTTATTTG 3743309 36 100.0 36 NNNNNNNNNN .................................... ATCTAAAGAAAGACAGTACAGGACAATATCCCGATG 3743381 36 100.0 36 NNNNNNNNNN .................................... AAAACTAATTGCTTCAAATATTTTGCTATTCTTTTA 3743453 36 100.0 36 NNNNNNNNNN .................................... ACCTTCTTATTTCCATCCTTTTTATCATCGTAGTTT 3743525 36 100.0 35 NNNNNNNNNN .................................... GACATAATAAAACAGTTAATAAGATTAATAAATAA 3743596 36 100.0 35 NNNNNNNNNN .................................... TCTTTAACAAAAGTTCTCCACTTAGAAAAGTACTT 3743667 36 100.0 35 NNNNNNNNNN .................................... TTTGCTAATTTCATCAAGCTTGCTAGAAATCTCTT 3743738 36 100.0 34 NNNNNNNNNN .................................... CCCACTGAAGCTCGTTACTGGTGTGCCTTATCAT 3743808 36 100.0 35 NNNNNNNNNN .................................... CTTTTAGTAGAACGTCTTTTTGATACTTGTGAAAA 3743879 36 100.0 35 NNNNNNNNNN .................................... TATTTTCCAAAATTTTATATTCGAATTTTATCACG 3743950 36 100.0 35 NNNNNNNNNN .................................... TATATTTTACAAATGTAAAGTATAGACTTTTTTAA 3744021 36 100.0 35 NNNNNNNNNN .................................... GTTCTGGCATTAGTTGCTTTGCCGCAGCAAGCACA 3744092 36 100.0 38 NNNNNNNNNN .................................... TAGTCATAATATATAAGTTTTTTAATAAATTAAAGAGA 3744166 36 100.0 34 NNNNNNNNNN .................................... AGAAATGTATATGCTCAAGATAGTTTAGATGTAA 3744236 36 100.0 33 NNNNNNNNNN .................................... AAGGTAGGGCCGCAACTGTCCGTCCGTTACCAA 3744305 36 100.0 36 NNNNNNNNNN .................................... CTATCCCAGTGGTCCCATGTCTGTATTGTTTCAGGT 3744377 36 100.0 35 NNNNNNNNNN .................................... CTCAGGACACAAAGGGTAGTTGTCAAGTATTATAT 3744448 36 100.0 35 NNNNNNNNNN .................................... TCTACCGTCATGGGTAGAATATTCATAGTGCATAC 3744519 36 100.0 34 NNNNNNNNNN .................................... TAGAATCTCTTCAAGGAGTTTGGAAACATCTGTT 3744589 36 100.0 35 NNNNNNNNNN .................................... CTTCTTCCCTAGTTTTTTTGATTAGGGCTAAGGAA 3744660 36 100.0 34 NNNNNNNNNN .................................... GTAAACACGCTGGACTTAAAATCCAGTGCACTGT 3744730 36 100.0 38 NNNNNNNNNN .................................... TTTTATTCCGTTTGATAAGTCGCTCTAGGCTCTTTTTC 3744804 36 100.0 35 NNNNNNNNNN .................................... ATTAGAATTGGCTCTGAAAAGACTTCAGGATTAAA 3744875 36 100.0 37 NNNNNNNNNN .................................... CTCTGTAGATAGTGGACTAATACTAGTAGACTAATGA 3744948 36 100.0 34 NNNNNNNNNN .................................... TTAAAAGTTTCTTTTTAAATTCTTCAGTTTCTTT 3745018 36 100.0 36 NNNNNNNNNN .................................... GGAAATACGTATTCCCAAGAATACTTGGTTATCATA 3745090 36 100.0 34 NNNNNNNNNN .................................... ATCCATACATAAGATATTACCTCTAGAGTGTATT 3745160 36 100.0 37 NNNNNNNNNN .................................... ATTTCTCTTCTCCTAGCTTAACCAAAGTTTCTAAGTT 3745233 36 100.0 36 NNNNNNNNNN .................................... TATAACACATAGATATATATATTCCGTTAAAAACTC 3745305 36 100.0 40 NNNNNNNNNN .................................... TGTAGACTGCTTTCTACTACAATAGGGCTGTTGAAGTCCA 3745381 36 100.0 39 NNNNNNNNNN .................................... TGTTTCTTTAGAGGAGTTCTCCATCCTCAATAAAAAATT 3745456 36 100.0 34 NNNNNNNNNN .................................... TAAAGGGTCTTTGATTAAATAAACCTCTTCATTT 3745526 36 100.0 36 NNNNNNNNNN .................................... CGTTGCCGTCAAAGCTAAGGGGCAACTAAATCACAA 3745598 36 100.0 36 NNNNNNNNNN .................................... TGTAGCAGACAACAACTTCTGATCCAAATGAGCCTA 3745670 36 100.0 34 NNNNNNNNNN .................................... ATTTTACACCGAAATAAATAAAGCTAAAGATTTA 3745740 36 100.0 36 NNNNNNNNNN .................................... TTCTGCCCGCCGCCTAACGTCTTGGCGGTTACCCTA 3745812 36 100.0 35 NNNNNNNNNN .................................... CTTTTTGCCTCTTCATTTGTTATGAATCCCTTTTC 3745883 36 100.0 34 NNNNNNNNNN .................................... GTCATTTCCGAGGGACTGCCTTTTGGTTTTTTGT 3745953 36 100.0 36 NNNNNNNNNN .................................... TGTCAAACTCCATCACAACTTGCTTGTTTGTCCCGA 3746025 36 100.0 35 NNNNNNNNNN .................................... GAGCCTGATTCCAGTCATATTTCTCAAACATACCA 3746096 36 100.0 35 NNNNNNNNNN .................................... GCAATTTAGGCACGAGAAGCCATTTGTCCAGCAGG 3746167 36 100.0 34 NNNNNNNNNN .................................... TGCTTGGGTGATTCGATAGATTGAGGAACATACT 3746237 36 100.0 34 NNNNNNNNNN .................................... ACTTTCTAATACATTATTGAAATATCTATTATAT 3746307 36 100.0 34 NNNNNNNNNN .................................... TTCCTGCTCAAAGTGCCGAGTTGTCGGCTGAGCA 3746377 36 100.0 33 NNNNNNNNNN .................................... GGTTTGCAGCGGTTGAAAATTGAGCTTGAGGAA 3746446 36 100.0 35 NNNNNNNNNN .................................... AGTGTTAAATTATCCTCAATGCTATCTACTTCAAA 3746517 36 100.0 34 NNNNNNNNNN .................................... TGCACAAAATAGCAGAAGCGGCAAACCTAAACTA 3746587 36 100.0 35 NNNNNNNNNN .................................... GACAGCGAGGGTAATAAACCGCATATCCAAGTTAA 3746658 36 100.0 35 NNNNNNNNNN .................................... TTCTTTTTTGAGTTAGCAGATTGCTTCTACTGTGA 3746729 36 100.0 34 NNNNNNNNNN .................................... CTTCTATATCTTCACCAGATTTCTCCCAAATCTT 3746799 36 100.0 36 NNNNNNNNNN .................................... ATAAGGATCTGAACCTACATAAGGCATCACTAATTT 3746871 36 100.0 35 NNNNNNNNNN .................................... GCGCATCATCTTCAAAAACAATATTCAGCTCAATG 3746942 36 100.0 35 NNNNNNNNNN .................................... CCCTTTGGGTTGGGGCTTCTTTTTTAGCCTTAGCT 3747013 36 100.0 35 NNNNNNNNNN .................................... TGTCATCGGTATTTTTTGGAGACATTATTAATCTT 3747084 36 100.0 34 NNNNNNNNNN .................................... AGCATTGAAACCCTAGTAGCCTCTGGGGTTTCAA 3747154 36 100.0 35 NNNNNNNNNN .................................... TACGATGTAACATTTGAGGACGGCACTATGGCTAC 3747225 36 100.0 34 NNNNNNNNNN .................................... TAATGGAAAAAGTAGATCTTTCTGAATTTGAACT 3747295 36 100.0 37 NNNNNNNNNN .................................... TTAATGTTGGTTGGTTTGAACATAGCTCTTGCACCAA 3747368 36 100.0 35 NNNNNNNNNN .................................... TCACATACTAAGTAAAGAGTACAAAGAACTAGTAA 3747439 36 100.0 34 NNNNNNNNNN .................................... GGGCTTGGCAGCTTCTCTTGCTGCGTCTGCTTCA 3747509 36 100.0 34 NNNNNNNNNN .................................... TGGAAGTTGAAGTTGAATCTGAGGCTGCTAAGCA 3747579 36 100.0 36 NNNNNNNNNN .................................... TGGTTAAAGGGAAGGTATGCTTCCCCTCCCTTTGTA 3747651 36 100.0 35 NNNNNNNNNN .................................... AGCTTCCATAGAAACTCTAAGATTATGTAAATACT 3747722 36 100.0 36 NNNNNNNNNN .................................... CTTTAACAGAAGAAGCTTCTCTTGAATTTGAAATAG 3747794 36 100.0 35 NNNNNNNNNN .................................... AAAGTGTGAAGAAAAAGCGTCTTTGTGTTTAATTG 3747865 36 100.0 35 NNNNNNNNNN .................................... TACAATTGTACCGATTCCAGATCCAAGTGCGTCCG 3747936 36 100.0 34 NNNNNNNNNN .................................... AAAAGCAGTTAGGAGCAATGGGCACGAACAACGG 3748006 36 100.0 36 NNNNNNNNNN .................................... GATGAGGGCAAGGCTCGCTTCGAAGAGCTGTGGGGC 3748078 36 100.0 34 NNNNNNNNNN .................................... AACTATAAATACACCTTCCTAGCAGAACTGGCTT 3748148 36 100.0 37 NNNNNNNNNN .................................... AATGATGCAATTCCGCACACCCTGCGCCTTAGCGCGA 3748221 36 100.0 35 NNNNNNNNNN .................................... CCTCGCCTGCAATTGCTGCAGAATCGCCTGCAGCT 3748292 36 100.0 35 NNNNNNNNNN .................................... AGTTAATTATATAACATTTTATTCAACCTATTTAA 3748363 36 100.0 34 NNNNNNNNNN .................................... TAAGTAGTTACCTTCGCCAATAGGGCCCCGCTGC 3748433 36 100.0 34 NNNNNNNNNN .................................... TAAGTAGTTACCTTCGCCAATAGGGCCCCGCTGC 3748503 36 100.0 36 NNNNNNNNNN .................................... GTTGCCTTTCTAGGATAAATACCTAGCAGGTGTAGA 3748575 36 100.0 34 NNNNNNNNNN .................................... GCTACACACCTCTTCATTTATTTGCAAACCTTTC 3748645 36 100.0 37 NNNNNNNNNN .................................... CACCCACAAGAAAATTCTTGCGGGTGAAAGAAATTGA 3748718 36 100.0 33 NNNNNNNNNN .................................... CCCTTAGTTTGTCGTATTTGCGCAGAATATAAA 3748787 36 100.0 32 NNNNNNNNNN .................................... ACCGCCGCCGATTTGGGCAAAGTAGAAGAAAC 3748855 36 100.0 35 NNNNNNNNNN .................................... CGATGATCTGCCCATGTTCATTGCGAAATGCTTTC 3748926 36 100.0 36 NNNNNNNNNN .................................... CCTGGCTGAACGGCCTGAGGCTCTTCGCCGTACTTT 3748998 36 100.0 35 NNNNNNNNNN .................................... AACCTCGGTGGTCTTATGATCCTTCGTTTATTGTA 3749069 36 100.0 35 NNNNNNNNNN .................................... CGATGATCTGCCCATGTTCATTGCGAAATGCTTTC 3749140 36 100.0 35 NNNNNNNNNN .................................... TGGGTTGTCTAACTCTTTCAAGCTGCTCGCCATCG 3749211 36 100.0 35 NNNNNNNNNN .................................... TATAAATGAGCATTTAACGGAAGCAAACCGTTTGT 3749282 36 100.0 35 NNNNNNNNNN .................................... TATAAATGAGCATTTAACGGAAGCAAACCGTTTGT 3749353 36 100.0 35 NNNNNNNNNN .................................... TCTGGCTTTTTGGGGCGTCTACTTTGCCGTTTTTA 3749424 36 100.0 36 NNNNNNNNNN .................................... TCAGTTGAAACGCCTTTTCAAATTGAGCAGGCATTT 3749496 36 100.0 34 NNNNNNNNNN .................................... AATCAATCTTGACCCAAAAAAAAGGGGCTCAAGT 3749566 36 100.0 33 NNNNNNNNNN .................................... AGTCATCTTTTCAGAAAACATCTTATCTGTTAC 3749635 36 100.0 35 NNNNNNNNNN .................................... CTTCGGATTGGAGACAGAACTTCGTTTCTAATGCT 3749706 36 100.0 35 NNNNNNNNNN .................................... TAGCCGCTCTTTTAGCTTACTCGTCTTATCCATTA 3749777 36 100.0 34 NNNNNNNNNN .................................... CAGCGGTACAGCCAGAAGTAGTGCAGCGGGTTCT 3749847 36 100.0 37 NNNNNNNNNN .................................... TGCTGGCGGGCCCAAGGGCTGAAGCTAAGACTTGCCG 3749920 36 100.0 36 NNNNNNNNNN .................................... CTTTTTAGTCGTTGAGACTTTAACGAAGCAGGCCCC 3749992 36 100.0 33 NNNNNNNNNN .................................... ACAATCCTACATTTTGCAAAGGAGGCCCTTTAA 3750061 36 100.0 35 NNNNNNNNNN .................................... TCCAAGAGTGGAGCGGCCCATTGACTACGAGGCTG 3750132 36 100.0 34 NNNNNNNNNN .................................... AGTCAAAAACAAGCAATTGAAAAAATTGAATCTT 3750202 36 100.0 35 NNNNNNNNNN .................................... AGTTAAGCTTTGTCATTGAAATTCCCAATCATTTT 3750273 36 100.0 34 NNNNNNNNNN .................................... TTGTCAGCCCATTGTCTGACTTCTTCTTTAGCTC 3750343 36 100.0 34 NNNNNNNNNN .................................... TTGCGCTATTGATTTGGAATTGGATAGCACTCAG 3750413 36 100.0 36 NNNNNNNNNN .................................... AAGCTGTGAAAGAGGGTATCATTACACTTTGGAGTA 3750485 36 100.0 36 NNNNNNNNNN .................................... AACTCTGAGACAAGAAGCATTTGAGGCCAAGCACAA 3750557 36 100.0 35 NNNNNNNNNN .................................... CACCTTGGTTCATTTTATCCAAGAAACTACTAACA 3750628 36 100.0 36 NNNNNNNNNN .................................... CCCGTTTCTTTGTCTACAGCAGGTAGGTGATATGGG 3750700 36 100.0 34 NNNNNNNNNN .................................... TGAATATTGGCCAACCATATTGGCGGCCGCTAAA 3750770 36 100.0 33 NNNNNNNNNN .................................... TTTCATCTTTTGCTCCAAAAAGTAAAGAGCAAA 3750839 36 100.0 34 NNNNNNNNNN .................................... CTGGAAATAACATTAGCATTAGCTAATGCTGTTT 3750909 36 100.0 34 NNNNNNNNNN .................................... TAGCATTCTTCCATTCTGGACTTTCGGGTTCAAA 3750979 36 100.0 34 NNNNNNNNNN .................................... TTTACTTTATGCAAGTTAAATTGAGTACATTTCT 3751049 36 100.0 34 NNNNNNNNNN .................................... ACTGATCCTGACCAGTAAAACCACCGTCCTCTTC 3751119 36 100.0 35 NNNNNNNNNN .................................... TACGGGGGTTTTTAGATTAAGCGTCGACTACCCCT 3751190 36 100.0 37 NNNNNNNNNN .................................... AACCATCGTCAGGACAGAGAGTGGAAATTTGAAGCTC 3751263 36 100.0 33 NNNNNNNNNN .................................... CTTTCACTTTAGCGGTAAGAATGCCATTATTGG 3751332 36 100.0 36 NNNNNNNNNN .................................... TATATAATCGGCCTGCCAAACTGGAAAGCTGGTTTT 3751404 36 100.0 33 NNNNNNNNNN ....................G............... CTTTTTGGAAGCTTAAGAAATTACATTAACTAA 3751473 36 100.0 36 NNNNNNNNNN ....................G............... TTCCTCTTTTTCAAGAGGAAGAATGACATCATTTAA 3751545 36 100.0 34 NNNNNNNNNN ....................G............... GACTTATTACGTAGATGTACTACACAACGAGATA 3751615 36 100.0 34 NNNNNNNNNN ....................G............... CTTGCAAATCCTTTTACTGCTAGTTTCAATTGCT 3751685 36 100.0 35 NNNNNNNNNN ....................G............... TATTTATGGCCCGAACTGCCATTGCATTGAAGATT 3751756 36 100.0 35 NNNNNNNNNN ....................G............... GTTACTCACGTCATTTTAGACGCAGCCTTGACCCA 3751827 36 100.0 34 NNNNNNNNNN ....................G............... ATCTTTATCGGATTGTAATATCGGATGTAGATAA 3751897 36 100.0 34 NNNNNNNNNN ....................G............... CAATTTACCACCGAAGACGGTAAGCGTTGGACTA 3751967 36 100.0 35 NNNNNNNNNN ....................G............... TGTGAGAAGCTCGTAAGTCCTGACAATTTCACAAA 3752038 36 100.0 40 NNNNNNNNNN ....................G............... TTGGCAACAAGGCGGTTCTTGCCAGAAATAAGAAACCCTA 3752114 36 100.0 34 NNNNNNNNNN ....................G............... TGCTGGCTTTGAGGCGACTTTGCTCGCCCCATAC 3752184 36 100.0 36 NNNNNNNNNN ....................G............... GATTTCATAAAGCGTACGAAATCTCTGTTTTTGTGA 3752256 36 100.0 36 NNNNNNNNNN ....................G............... TATATAATCGGCCTGCCAAACTGGAAAGCTGGTTTT 3752328 36 100.0 33 NNNNNNNNNN ....................G............... CTTTTTGGAAGCTTAAGAAATTACATTAACTAA 3752397 36 100.0 36 NNNNNNNNNN ....................G............... TTCCTCTTTTTCAAGAGGAAGAATGACATCATTTAA 3752469 36 100.0 34 NNNNNNNNNN ....................G............... CAATTTACCACCGAAGACGGTAAGCGTTGGACTA 3752539 36 100.0 35 NNNNNNNNNN ....................G............... TGTGAGAAGCTCGTAAGTCCTGACAATTTCACAAA 3752610 36 100.0 40 NNNNNNNNNN ....................G............... TTGGCAACAAGGCGGTTCTTGCCAGAAATAAGAAACCCTA 3752686 36 100.0 34 NNNNNNNNNN ....................G............... TGCTGGCTTTGAGGCGACTTTGCTCGCCCCATAC 3752756 36 100.0 36 NNNNNNNNNN ....................G............... GATTTCATAAAGCGTACGAAATCTCTGTTTTTGTGA 3752828 36 100.0 36 NNNNNNNNNN ....................G............... TATATAATCGGCCTGCCAAACTGGAAAGCTGGTTTT 3752900 36 100.0 33 NNNNNNNNNN ....................G............... CTTTTTGGAAGCTTAAGAAATTACATTAACTAA 3752969 36 100.0 36 NNNNNNNNNN ....................G............... TTCCTCTTTTTCAAGAGGAAGAATGACATCATTTAA 3753041 36 100.0 34 NNNNNNNNNN ....................G............... GACTTATTACGTAGATGTACTACACAACGAGATA 3753111 36 100.0 34 NNNNNNNNNN ....................G............... CTTGCAAATCCTTTTACTGCTAGTTTCAATTGCT 3753181 36 100.0 35 NNNNNNNNNN ....................G............... TATTTATGGCCCGAACTGCCATTGCATTGAAGATT 3753252 36 100.0 35 NNNNNNNNNN ....................G............... GTTACTCACGTCATTTTAGACGCAGCCTTGACCCA 3753323 36 100.0 37 NNNNNNNNNN ....................G............... AACAAGTCTGACCATAGAATCCTATTGGCAAAATTGT 3753396 36 100.0 34 NNNNNNNNNN ....................G............... CCCTTCATTATTTCCATTCGAATAGGGTGGTATA 3753466 36 100.0 1 NNNNNNNNNN ...........T........G........GCC..TA NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 149 36 35 ATACTAAACCCATTGCAGGCAAAGCAGCATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.40,-2.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [437,594] Score: 0/0.18 # # Final direction: F [5.18,0 Confidence: HIGH] >NC_016940 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3820538 36 100.0 34 AATTATATCG .................................... AAATAGAATGGGCTGAAGGCGAAAAGCTAAAGGC 3820608 36 100.0 33 AGCTAAAGGC .................................... CTCGCACATGACAACAGCAGTTCCTCCCTCAGA 3820677 36 100.0 35 CTCCCTCAGA .................................... CTGTTTATACTCGCCCAATCGAGTAAACTAATTAT 3820748 36 100.0 35 AACTAATTAT .................................... AGCATGTCAAAAAAGTATATTACACACAAACAGAC 3820819 36 100.0 33 ACAAACAGAC .................................... AGGTTTGAGCGAATTAGCCCAATTGAGACTGGA 3820888 36 100.0 35 TGAGACTGGA .................................... AGCATGTCAAAAAAGTATATTACACACAAACAGAC 3820959 36 100.0 33 ACAAACAGAC .................................... AGGTTTGAGCGAATTAGCCCAATTGAGACTGGA 3821028 36 100.0 35 TGAGACTGGA .................................... GGACGAAGAAGGATATGGAGATATCCTTCTAAAAG 3821099 36 100.0 34 CTTCTAAAAG .................................... ATGTGAGTATTTTGTGTCTCTCCAGACATACGTA 3821169 36 100.0 35 GACATACGTA .................................... GTAATGACAAATCGGCCTTACCCGACCTAAATTCT 3821240 36 100.0 34 CCTAAATTCT .................................... CCAAGTTTATGTGTGCTTTACACAGGAGATACTT 3821310 36 100.0 34 GGAGATACTT .................................... GAAAGGAAAAGTAGTATATGCTAAGTTCTACGAA 3821380 36 100.0 36 GTTCTACGAA .................................... TTCCAGTCCCATGCAGGAAACTCCTGCAGGACTGAA 3821452 36 100.0 34 CAGGACTGAA .................................... CTCTTCAGGAAGAGTGGTTTCATCGGCATCGGGA 3821522 36 100.0 35 GGCATCGGGA .................................... GTTAACCACCCACTCAGTACTAATCTCTTTCTCCA 3821593 36 100.0 36 TCTTTCTCCA .................................... CTGTGGCAATCATCGTGTCCACTTCGCCAAATTGGG 3821665 36 100.0 34 CCAAATTGGG .................................... ATAAAAACGAAATACAGGTATTAGTACAGTTGTT 3821735 36 100.0 35 TACAGTTGTT .................................... TAGAACTTCTGGAAAAGGAGGGGTTAGAGGTAACA 3821806 36 100.0 38 AGAGGTAACA .................................... ATTTCGTATTTGTCCTTAGCCAAATAGAAGGCAATAAA 3821880 36 100.0 34 AGGCAATAAA .................................... TGAAAATATCCTAAACGCCCCCAACGGCTTAGAT 3821950 36 100.0 33 CGGCTTAGAT .................................... TGATATTACAAACACCTATCTATGATAGAGTAT 3822019 36 100.0 35 GATAGAGTAT .................................... GCAGTGTTAGTAAATTTGTAGGAGCCACTAACAAA 3822090 36 100.0 34 CACTAACAAA .................................... TCGTCCTCGCTTTGATGTTCGTAAATTCAAACCC 3822160 36 100.0 37 ATTCAAACCC .................................... CTCTAATAGTTAATAAGTGGAGACAAGGTTAAATAAA 3822233 36 100.0 36 GTTAAATAAA .................................... TTTCTACTCTCCTATCGAGAGCAGAAGAGCTGCGAA 3822305 36 100.0 35 GAGCTGCGAA .................................... AATGTCAGATAAACCTTGTTTTGGGTCTTGGTATT 3822376 36 100.0 35 TCTTGGTATT .................................... GTTCCAATTTATATTGTTCTTCTGCTTCTTTAACC 3822447 36 100.0 36 TTCTTTAACC .................................... AGGGGAGGCTAACCCCACTCTCGCCCTTAAGCGGGC 3822519 36 100.0 34 TTAAGCGGGC .................................... TGCCCTCCCAAGGCTGAGATTCAGCCTCAAAGAA 3822589 36 100.0 34 CCTCAAAGAA .................................... AGGAGACCACTATACCAAGCGCTTTTATTCATGT 3822659 36 100.0 35 TTATTCATGT .................................... TAAATATGGGTAAGCAGTATAAAGAATTTGAGACG 3822730 36 100.0 35 ATTTGAGACG .................................... ATTTACGAGTTCGAGATCAAGGCGTCTTTTTCAGA 3822801 36 100.0 36 CTTTTTCAGA .................................... TATCCATCCGTTTTCTTATAATTGTGTAAATGCACA 3822873 36 100.0 35 TAAATGCACA .................................... CTCAAAGCCTTCAATTTGGGTTGGAAATGGATGTA 3822944 36 100.0 34 AATGGATGTA .................................... CAGGAAGATTTTCGTGTACAAAAGCCTCTACACA 3823014 36 100.0 34 CCTCTACACA .................................... TCTATATTGGAAGAGTTAGAAGAGTATGAGTACT 3823084 36 100.0 36 TATGAGTACT .................................... ATTCTTTGCTTTACTGTAATTCAGGGTTCGGTTGCA 3823156 36 100.0 34 TTCGGTTGCA .................................... CCGTTTTTCGGTTCGCCAAACCCTAACAACGAAA 3823226 36 100.0 36 AACAACGAAA .................................... TAAGAGAAATTGGTTTATCTACAAGAGCTTGGAACT 3823298 36 100.0 37 GCTTGGAACT .................................... AGAACCCAATCAAATCCATTCAGAGGGCACGTATATC 3823371 36 100.0 36 CACGTATATC .................................... CAGCTTCGTTTAGATATTAGAGAGACAGGTGCTGAA 3823443 36 100.0 32 AGGTGCTGAA .................................... CAGGTACTTCGGAGCAAATACGCCGTCTTTTT 3823511 36 100.0 36 CCGTCTTTTT .................................... TCGACTAGGTTGCGTTTGGCTGAAGAATAGAGAGGA 3823583 36 97.2 34 ATAGAGAGGA ..............................G..... AGGTCTTCGAACTTTGTTTCGAAATCGGCTGGGC 3823653 36 100.0 37 TCGGCTGGGC .................................... TCATAAATTTGACCTTCATAACCTTTTACCTTTAAAA 3823726 36 100.0 34 ACCTTTAAAA .................................... TACTCATGACTTTTGGTATTAATGATTAATAAAT 3823796 36 100.0 38 ATTAATAAAT .................................... AGCGATAAACAAGAGCGTTTGCTATTAGAAGTAGAACA 3823870 36 100.0 35 AAGTAGAACA .................................... CATTGGCCCGAATGGAAGAATGTTATCCCATGCGT 3823941 36 100.0 34 TCCCATGCGT .................................... CCTCTAGCCAATGCAGACCAAGCAAAGAACGCCG 3824011 36 100.0 35 AAGAACGCCG .................................... CATTGGCCCGAATGGAAGAATGTTATCCCATGCGT 3824082 36 100.0 34 TCCCATGCGT .................................... CCTCTAGCCAATGCAGACCAAGCAAAGAACGCCG 3824152 36 100.0 34 AAGAACGCCG .................................... ACATGCCATACTCCATTGCTAGAGCTACACGATT 3824222 36 100.0 35 CTACACGATT .................................... ATCTTTGTAGATTATGAAAAAGAACTATATAACAA 3824293 36 100.0 34 TATATAACAA .................................... CCTCTAGCCAATGCAGACCAAGCAAAGAACGCCG 3824363 36 100.0 35 AAGAACGCCG .................................... CATTGGCCCGAATGGAAGAATGTTATCCCATGCGT 3824434 36 100.0 34 TCCCATGCGT .................................... CCTCTAGCCAATGCAGACCAAGCAAAGAACGCCG 3824504 36 100.0 33 AAGAACGCCG .................................... ATATACTATGCAAGATCTATGCATCGTTAAATT 3824573 36 100.0 38 TCGTTAAATT .................................... AAAGTGGAGAAGAACGAGCATATTAGTAGCCATTAGCT 3824647 36 100.0 35 GCCATTAGCT .................................... GACTAAATACACATTTAAAAACGAGGATGGTAAAA 3824718 36 100.0 36 GATGGTAAAA .................................... CATCAAGCGCTCTTTCCTTGAGCGTTACGGGGTAGA 3824790 36 100.0 34 ACGGGGTAGA .................................... ACATGCCATACTCCATTGCTAGAGCTACACGATT 3824860 36 100.0 35 CTACACGATT .................................... ATCTTTGTAGATTATGAAAAAGAACTATATAACAA 3824931 36 100.0 35 TATATAACAA .................................... AAGGCTAAGGCTCGGGCGGCTAAGGCCGATATTGA 3825002 36 100.0 35 CCGATATTGA .................................... ACATTCGTTACTCATTTGGCTGTTGGTTTTGCGGT 3825073 36 100.0 34 GTTTTGCGGT .................................... ACATCCCCCCCGTCCTTAGCCGTTTCACCCCCAA 3825143 36 100.0 35 TCACCCCCAA .................................... CCTTTAGGGTCACATGCATGTCCATAGCGAAGGTT 3825214 36 100.0 35 AGCGAAGGTT .................................... AGGATATGGAGATATCCTTCTGGAAGATTACTTGA 3825285 36 100.0 37 GATTACTTGA .................................... ATATCTAAGGTAGGCTTAGCCATTGGTGGGGAGCATA 3825358 36 100.0 39 GGGGAGCATA .................................... TGGTTCGAATTTGGAGAACATGGTATATCTGGTAAGGTA 3825433 36 100.0 36 TGGTAAGGTA .................................... GCTTTCCGTTTCTTGAAAGCGGACGGCAAAACAGAA 3825505 36 100.0 36 CAAAACAGAA .................................... TTGATCCAGAAACAATTTTTAAGCCCCTACAACACT 3825577 36 100.0 33 CTACAACACT .................................... GGATATATTACGCTTGTAGATGGGGTGGACCTG 3825646 36 100.0 35 GGTGGACCTG .................................... TAGATTTTTCAGCTTCTGATAATAGTTTATTAAAA 3825717 36 100.0 35 TTTATTAAAA .................................... AGAAGAGTTTAAGCAGCTTGTCTGCAAATGTAGAC 3825788 36 100.0 33 AAATGTAGAC .................................... TGGTAAGTATTGTACTTTGGAAATCATTAGATT 3825857 36 100.0 36 TCATTAGATT .................................... ATGACTACCTGGATCGACGAAGATATGAAGAAAGGT 3825929 36 100.0 35 GAAGAAAGGT .................................... CAAACGCAGGTCAAGAAGAACACTAAGAGCGGCGT 3826000 36 100.0 35 AGAGCGGCGT .................................... ATAGTAAAAGAAGGCAGGCCCTGCGTCACTTCCTT 3826071 36 100.0 36 TCACTTCCTT .................................... AAAGAGATCGTGGAGGATCCTATCAAGGCTGTTGCT 3826143 36 100.0 35 GGCTGTTGCT .................................... TTGAGAGCTGATGATTCCAAAGCAAAAACTACAGT 3826214 36 100.0 36 AAACTACAGT .................................... CTACCTATACGGTAACTAAGCACTAGCCTTTGTCTA 3826286 36 100.0 34 CCTTTGTCTA .................................... AATACCTTAAAATTTAAGTATATCTATGAAAGTG 3826356 36 100.0 35 TATGAAAGTG .................................... TTAAAGCTGTCTAAGGCAGCTGAAAAAGGGTTGAA 3826427 36 100.0 34 AAGGGTTGAA .................................... TTGTTACCCGGCCTCCAAACAAGGTCAGCACCAG 3826497 36 100.0 35 TCAGCACCAG .................................... TTAGGCTTAATGTAGTCAAAAAACTCCTTTTCTGT 3826568 36 100.0 36 CCTTTTCTGT .................................... TTAACGTAGTTTTCTAGAATGTTTAAAGATTCTACA 3826640 36 100.0 33 AGATTCTACA .................................... AGCATTGGACCGAACCGTAAAAGTACGAGGAAA 3826709 36 100.0 34 TACGAGGAAA .................................... TTGCTATTGACCTTTTTGAGGGGGGCAAATTGCT 3826779 36 100.0 34 GCAAATTGCT .................................... CTAAGGTCCGCTGTATAGTTGGAGTTTATATAGG 3826849 36 100.0 34 TTTATATAGG .................................... CTGTAACTCTTCCATCATCAGGATTAGTTATTCA 3826919 36 100.0 35 TAGTTATTCA .................................... GTAAGGAACGGGCACTAAAGCTTCGATCGTTGAGC 3826990 36 100.0 35 ATCGTTGAGC .................................... CAAGCACCACCGAGAGAATCGTTTTAGAGGAAGAT 3827061 36 100.0 34 AGAGGAAGAT .................................... TTGAGAGGTTATTCGTACTCTCTCAAGACATCTT 3827131 36 100.0 34 AAGACATCTT .................................... TTAAAACATTCTAAGGCCGATTAAAGCCTTTAAT 3827201 36 100.0 36 AGCCTTTAAT .................................... AAGCAGCATCAGGTTTTCATGTAGGTTGCGATGATT 3827273 36 100.0 35 TGCGATGATT .................................... GGGACCATTCCAGCATGAGTGCGCCCACCGATACA 3827344 36 100.0 34 CACCGATACA .................................... TAAACCTCGAAGAAACATTGAGCATGTTATTTTT 3827414 36 100.0 33 TGTTATTTTT .................................... TCTTAAAAATATAATTTATGATGAAACTTCAGT 3827483 36 100.0 35 AAACTTCAGT .................................... AAAGAAGAAATTATCTATGTTGAAAAAAATAAGAA 3827554 36 100.0 34 AAAATAAGAA .................................... AAATTTAAAGAAAATTCTCCTGATTGTATATATA 3827624 36 100.0 37 TGTATATATA .................................... CCCCCGCAAAACAGAGCGAAGCGACGGCGAAGCCGAA 3827697 36 100.0 34 CGAAGCCGAA .................................... AGATGCTACATCTGACATAATTGATATGGTAATA 3827767 36 100.0 33 TATGGTAATA .................................... AAAAAAGGCTTTCAAAAAAGACTAAAAAAAGGG 3827836 36 100.0 36 AAAAAAAGGG .................................... TTTTTCTGGAAGATTGATAATATCTCCAAATACAAC 3827908 36 100.0 35 CAAATACAAC .................................... GTATTGATAGTGGGTTTAACTTTAAAAACTAAAAA 3827979 36 100.0 34 AAACTAAAAA .................................... TCATTATCGATTTTGTAATCAAAAAGACCTTGAG 3828049 36 100.0 36 AGACCTTGAG .................................... ACCCAGCAGAATGAGGAGACCTTTTATTTTATACTA 3828121 36 100.0 36 TTTTATACTA .................................... TTACACAGCTACAATGTATTCTCTTCAGTTTATGCA 3828193 36 100.0 36 AGTTTATGCA .................................... GATAATTGCGGAATCTTTTATAAGGCCGATACAGAA 3828265 36 100.0 35 CGATACAGAA .................................... AAATCCCTTCTCAGTTCACAAAAGAACAATGGAAT 3828336 36 100.0 35 ACAATGGAAT .................................... ACGATCAAACAATTGCGTTTCAGTTGTGGTCTCGT 3828407 36 100.0 34 GTGGTCTCGT .................................... TTATTAAACTTCTTTTTAGAGAGGTATTTAATTG 3828477 36 100.0 35 TATTTAATTG .................................... AGAAACAGGGGTAAGTAATCAAAAAGTCTATGCTT 3828548 36 100.0 33 GTCTATGCTT .................................... GTTTTCAAGGGGCATGTTTGGTACCCTGAACGA 3828617 36 100.0 35 CCCTGAACGA .................................... ATAACCCTCTTAACGACAGTGGAAAAGGAGAAATC 3828688 36 100.0 AGGAGAAATC .................................... AGTAAAACTA ========== ====== ====== ====== ========== ==================================== 116 36 34 GTTTCAATGCTGCTTCGCCTGCAAAGGGTTTAGTAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.30,-2.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [555,271] Score: 0.18/0.18 # # Final direction: R [0.55,4.5 Confidence: HIGH] >NC_016941 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 61875 36 100.0 36 NNNNNNNNNN .................................... TCTACTAAAAAGTTATATGTTTCAACAATTTCGTCA 61947 36 100.0 37 NNNNNNNNNN .................................... TGGTTTAAGTTTGTCATTATAATCAATCCTTTTTCTT 62020 36 100.0 37 NNNNNNNNNN .................................... TGATTAAAACGGTTTGCTTTATTTGCATTTAAAATAG 62093 36 100.0 34 NNNNNNNNNN .................................... GTTTTTCATAGTTAATCAATCCCTTTTCTTTTTT 62163 36 100.0 36 NNNNNNNNNN .................................... TTAAATCTTTGATTGCTCTTAGCTCTAGTTATGTAT 62235 36 100.0 38 NNNNNNNNNN .................................... CACGCTGTAGTGAAGTATAGAAACGGCATGAGTACAAT 62309 36 100.0 1 NNNNNNNNNN ..............................AGAGTG NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 7 36 36 GATCGATAACTACCCCGAAGAATAGGGGACGAGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [14,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.20,-7.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [231,75] Score: 0.18/0.18 # # Final direction: F [1.33,0 Confidence: HIGH] >NC_016943 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1226405 29 100.0 32 NNNNNNNNNN ............................. GTGTACATCGGCCCGGACGAGCCCCACTGGGC 1226466 29 100.0 32 NNNNNNNNNN ............................. ACGTCGTCGGGCAACAACCACTCTGGACGGGA 1226527 29 100.0 32 NNNNNNNNNN ............................. GCCACCGCCCGGTCCTGGGGCAGCGCGCCGAG 1226588 29 100.0 32 NNNNNNNNNN ............................. GCGCGGCTGAACTCGTCAGCGGTGACCGCGGT 1226649 29 100.0 31 NNNNNNNNNN ............................. ACCCCGAAGCGCGGGCAGGACGGCTACCACG 1226709 29 100.0 32 NNNNNNNNNN AGTGCT..T.................... CGCTCACATACTGGGCCAGCAGGTCACGTGCC 1226770 29 100.0 30 NNNNNNNNNN ...T........................T CTCGGGCGCCGCCGCCCCAGAGGACGACAG 1226829 29 100.0 1 NNNNNNNNNN ......................GTGAT.. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 8 29 31 GTGCTCCCCGCGTCCGCGGGGGTGAGCCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.40] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [35.0-16.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [157,106] Score: 0/0.18 # # Final direction: F [0.68,0.37 Confidence: LOW] >NC_017017 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 5352 35 100.0 31 NNNNNNNNNN ................................... GCGGGGTGTCGTCAACGAACTTTCGCGAACG 5418 35 100.0 19 NNNNNNNNNN ................................... CAACGGTCTCCCGCGAACG 5472 35 100.0 1 NNNNNNNNNN ................................... NNNNNNNNNN ========== ====== ====== ====== ========== =================================== 3 35 25 TCCGATTTTCGGATTTTCGCTCGTAGCAAGGGTTT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.29%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-2.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [739,927] Score: 0/0.18 # # Final direction: R [0.27,0.37 Confidence: LOW] >NC_017026 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 3113022 32 100.0 42 NNNNNNNNNN ................................ CGACTCGGGCACGGCCGAAACACCGCGCGAAGGGCGGTTCAA 3113096 32 100.0 44 NNNNNNNNNN .................T.............. CGACTGGGAGGATGTCACTCGGACATAGCTGTCATCGGCGGTGT 3113172 32 100.0 45 NNNNNNNNNN ................................ GGACATGGATGTAGTAGCGTGGCTGTGGTGTGGCGGGCGATATGC 3113249 32 100.0 41 NNNNNNNNNN ................................ CGACTGCTGCACCTCCCGCACCCGGTGCGATTCTGCGTCCA 3113322 32 100.0 40 NNNNNNNNNN .............................C.. CGACCCCGATAGTCGCGCTCGTCCATGTCCCACCATGAGG 3113394 32 100.0 40 NNNNNNNNNN ................................ CGACTACCGTGATAGAAGCCGGAAAGCTCCGTGCCGTCAG 3113466 32 100.0 43 NNNNNNNNNN ........................T..GTCTG ACGACAGGGCACTGGACCTGTATGAGGCACAGATGGCGTACTA 3113541 32 100.0 42 NNNNNNNNNN ................................ CGACCGGATCGGTTACTCGTCGGGTTTCCGTCGCCATCGCGG 3113615 32 100.0 41 NNNNNNNNNN ........................A..GG.CT GACGACACTTGCGCGCCCATCGCATCCGCCATCCACGGGGT 3113688 32 100.0 40 NNNNNNNNNN ................................ CGACCTGAAAGGGGGACTGTGGACGAGTTCGCGCTCAAAT 3113760 32 100.0 41 NNNNNNNNNN ...................T...G..TCTGAC GACTTGAACACGCCGATACCTATTTGGTCGGGAGTGATAAA 3113833 32 100.0 42 NNNNNNNNNN ................................ CGACCGGACTTGATCGACGCGAACCTGTCTGACGCGGAACCT 3113907 32 100.0 42 NNNNNNNNNN ................................ CGACGGCTGGAAAAGGGCGCGGGGCAACCGCATCGTCAAGAG 3113981 32 100.0 40 NNNNNNNNNN T..C.GTC...G.................... CGACGCGTTGTGGTCGTGTCGTGGAGCCTGTATTTCGCTG 3114053 32 100.0 40 NNNNNNNNNN ................................ CGACCATTAGTTGGTGTTGTGATCGCTAAACGCCGGGGCA 3114125 32 100.0 42 NNNNNNNNNN ................................ CGACCTATCCGCGGGAAGAGATCACGAATCCGGCGTCGAAGG 3114199 32 100.0 29 NNNNNNNNNN ................................ CGACACGGCGGATGATGGTGGTGCTGAAG 3114260 32 100.0 39 NNNNNNNNNN ................................ CGACTGACAGGGTGCGGTGGTCGCTGATCGGCTCCCCGA 3114331 32 100.0 1 NNNNNNNNNN .....................GAACCT..G.T NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 19 32 40 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [2-14] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [38.3-36.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [960,45] Score: 0.18/0.18 # # Final direction: R [0.59,0.74 Confidence: LOW] >NC_017040 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 784336 29 100.0 37 NNNNNNNNNN ............................. CCAAAACTGACGAAATTATTAAACGTTGTTCTGGGGA 784402 29 100.0 37 NNNNNNNNNN ............................. CCAAAACCAGTCATTAAGTATGCGGACTTAGTTAAGC 784468 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 3 29 37 GTTTTAGAGCTATGCTGTTTTGAATGGTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.07%AT] # Reference repeat match suggestion: F [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 80% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.80,-0.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [104,118] Score: 0/0.18 # # Final direction: F [1.14,0 Confidence: HIGH] >NC_017027 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1613482 28 100.0 32 NNNNNNNNNN AA.TG.CA.................... CAGCTCAAAAAGCCAAAACACCGCTCTTTGGT 1613542 28 100.0 32 NNNNNNNNNN ............................ CGCCCGCGACAAGTGGTTGCAGATCCAAGCGT 1613602 28 100.0 32 NNNNNNNNNN ............................ TCATTAACGATGTTGATGCTTATGATGGTGAT 1613662 28 100.0 32 NNNNNNNNNN ............................ ACGTTAAATTTTACGGCAGTCTTAGACAGTTT 1613722 28 100.0 32 NNNNNNNNNN ............................ GAAGATGTGGGCGGGTTTCACATTCGTGAGAT 1613782 28 100.0 32 NNNNNNNNNN ............................ TTTAGTTAAGCCGCTCACTGAAGCTTTCGAGA 1613842 28 100.0 32 NNNNNNNNNN ............................ AAATACGGCTCAATTGCACAAGTGCCACTTGC 1613902 28 100.0 32 NNNNNNNNNN ............................ GATTAACTTTAATGTACGCAGACAAGTGAGAA 1613962 28 100.0 32 NNNNNNNNNN ............................ AAAAAATAATCTACAGACCATTCACTACGCTT 1614022 28 100.0 32 NNNNNNNNNN ............................ AGAATATTTAGTCGTTGGAAGACTTGCTGAGT 1614082 28 100.0 32 NNNNNNNNNN ............................ CCCGACTGTCGCGTTATTAATCTTGTTCGGTT 1614142 28 100.0 32 NNNNNNNNNN ............................ AGCTGATGGGAATTATTCCAACAAATGCGGCA 1614202 28 100.0 32 NNNNNNNNNN ............................ TTAAACGGCATTTAAACACTATCAAAGGAGTA 1614262 28 100.0 32 NNNNNNNNNN ............................ TTGAGGGTGGCAAACTCAAAAGAAAAACAGTG 1614322 28 100.0 33 NNNNNNNNNN ............................ AACAAGTGCCAGTGTGGCGTGCCGTCGTGGTGC 1614383 28 100.0 32 NNNNNNNNNN ............................ CATCGCAATGGAAAAGATGCGTTGTGAAAAAT 1614443 28 100.0 32 NNNNNNNNNN ............................ AAGATTTTCTAATATCAAATTCAGTAAGTTCT 1614503 28 100.0 32 NNNNNNNNNN ............................ GTTATTCCGCTGCCGCAGGTTTAGCAGACCTT 1614563 28 100.0 32 NNNNNNNNNN ............................ ACATTGATTGGCTAGCAATAGAACAGGATTTT 1614623 28 100.0 32 NNNNNNNNNN ............................ AAGGTTTAACTTCAACCGTGGAACGATTAAAA 1614683 28 100.0 32 NNNNNNNNNN ............................ CTCAGTAGTCTTTGACTATCAAAAATCGGAAG 1614743 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 22 28 32 TTTCTAAGCTGCCTATACGGCAGTTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:57.14%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [65.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [53,149] Score: 0.18/0.18 # # Final direction: R [0.27,0.96 Confidence: MEDIUM] >NC_017027 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 341387 28 100.0 32 AATTCATTTA ............................ TCGTTACCTGCGGGCGTTCGAATACAGCGGGA 341447 28 100.0 32 TACAGCGGGA ............................ GTTTAAAGCGCCTGATTTTTATCAATATCCAA 341507 28 100.0 32 CAATATCCAA ............................ TAATGGCGCACCAGTGTCACAAGAGTTCACTT 341567 28 100.0 32 GAGTTCACTT ............................ TTTAATTTTTAAAAAAGCGGTCACGCCGGAAG 341627 28 100.0 32 ACGCCGGAAG ............................ TTCATCGTGGACTGTTCAAAAGAAGTCGAGAA 341687 28 96.4 AAGTCGAGAA ..............G............. ATATCTGCAAA ========== ====== ====== ====== ========== ============================ 6 28 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:57.14%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.60,-6.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [80.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [141,231] Score: 0/0.18 # # Final direction: F [1.05,0 Confidence: HIGH] >NC_017030 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 2120434 31 100.0 38 NNNNNNNNNN A............................T. CGGACCGTGCCCGGGTCCTCTCGCGGACTCCTGGACGA 2120503 31 100.0 38 NNNNNNNNNN .G......................A.....A AGGACCGTGGCAGGCCCCCCAGGCTGCCCGGGCAGCAG 2120572 31 100.0 38 NNNNNNNNNN ............................... CGGCCCTCAGCCGGAAGCTCCTGTTCCATCCCGACGGC 2120641 31 100.0 37 NNNNNNNNNN ............................... GGCCTTGGTCCGGCTCCCAGGGGCCGGATCCAGGAAG 2120709 31 100.0 39 NNNNNNNNNN C................C......T.C.... GGATCCTGGCGGGGCTCCCAGGCGCCGACTCCAGGCCGC 2120779 31 100.0 38 NNNNNNNNNN .GG.....................A...... CGGACCGTGGCAGGTCCCCGCGCTGCCCCGGGCAGTTG 2120848 31 100.0 39 NNNNNNNNNN ...G..T.................A...... CGGACCGTTACCGGGCCCTCGGCGCTGGTTCCTGGCCGC 2120918 31 100.0 35 NNNNNNNNNN .GG....................C....T.. GGGACCAGGCAAGCCCTGGGGCGACCCCGAATGGC 2120984 31 100.0 39 NNNNNNNNNN .G..............A.............. CGGACCGTGACCGGGCCTTCGGTGCTGGCTCCAGCCTGC 2121054 31 100.0 40 NNNNNNNNNN .G....T....C...........CT..CTT. CGGACCGTGGCTGGTGGGGGCTCCTCCCCGTCCGGGCAGT 2121125 31 100.0 41 NNNNNNNNNN .G..........................TT. GAACACCGCCGCCGGGGGAGGTCTCTCCCAGCTCGGGCCGA 2121197 31 100.0 38 NNNNNNNNNN .G............................. GACCTTGGCGGGGCTCGTGGGCTTTGGCTCCGGACCGG 2121266 31 100.0 30 NNNNNNNNNN .G....T..........GTT.GGGACC.T.. TCGGGCTCGTGGGCTTTGGCCGCGGACCTT 2121327 31 100.0 1 NNNNNNNNNN .G....T....C................T.. NNNNNNNNNN ========== ====== ====== ====== ========== =============================== 14 31 37 GAAAACCTGTCGGACAGTCGGACAGGTTGGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-10.80,-8.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [9-30] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [25.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [49,113] Score: 0.18/0.18 # # Final direction: F [1.42,0.18 Confidence: HIGH] >NC_017030 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 8063924 24 100.0 45 TCAGCACGAG ........................ GGATGGCGAGACTCCGGCGGCCGATGCGATTGCGCTCGGCACGAA 8063993 24 100.0 31 TCGGCACGAA ........................ CGCTGCTGAGACTCCGGCGGAGGAGGTCGCG 8064048 24 75.0 42 GGAGGTCGCG ----...........T......A. CGGTGGCGAGGCTGGGGCCGATGCGATTGCGCTCGGCACGAA 8064114 24 100.0 39 TCGGCACGAA ........................ AGATGGCGAGGCTGCGGACGCGGTCGCGCTGAGCACCAA 8064177 24 100.0 45 TGAGCACCAA ........................ AGATGGCGAGGCTCCGGCTGCGGACACGGTCGCGCTGAGCACGAA 8064246 24 100.0 TGAGCACGAA ........................ AGATGGCGAGG ========== ====== ====== ====== ========== ======================== 6 24 40 CGACGTCGCCACGGACTGGCAGGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [4,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.30,-1.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [26.7-28.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [1525,4114] Score: 0.18/0.18 # # Final direction: R [0.37,0.55 Confidence: LOW] >NC_017030 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================== ====== 2473025 21 95.2 46 CGCGAAACCC ........C............ TGGTGGACCGTCTCTGGGGGCTCCGGGCCAGCAGTCGCCGGAAACC 2473092 21 95.2 49 GCCGGAAACC .............A....... TTGGAGAACCGCAGCAGGGGCTGCCGCCCAATTCAGGCTGCGGAAGCCT 2473162 21 57.1 48 GCGGAAGCCT ---------............ CTGGGGAACCGGGGCCCGGAACCTCTTCCTGCCCGAGCCGCAAAAACC 2473231 21 95.2 46 CGCAAAAACC .........A........... CGAGGGACTGGGCTGGGGCAGCCGTTCCATCCGGACCCCAGAATCT 2473298 21 85.7 51 CCCAGAATCT ..............G....GC TTGGAGAACAGTGGTTGGGAACTACCGCTCCAACTGGGTCCCAAGAAGACC 2473370 21 100.0 51 CAAGAAGACC ..................... TTGGGCCCACTGCGGCCGGAAGGTCGTCGTTCCGTCCGGGCAGCGGAAACC 2473442 21 100.0 50 AGCGGAAACC ..................... TGGCCGTCCTGCGGCTGGGGGCTCCTCGTTCCATCCGGGCAGCGGAAACC 2473513 21 100.0 51 AGCGGAAACC ..................... TTGGGCCCACTGCGGCCGGGAGGCCGTCGTTCCATCCGGGCAGCGGAAACC 2473585 21 100.0 50 AGCGGAAACC ..................... TGGCCGTCCTGCGGCTGGAGGCTGCTCACTCCCGACGGGCAGAGGGAACT 2473656 21 100.0 AGAGGGAACT ..................... TTGGAGCGCCGTCGCTGGAGGGGCTGCCCGCTCCCGTCGGGCTGCGGAATCTT ========== ====== ====== ====== ========== ===================== 10 21 49 TGTCGGACAGTCGGACAGGTT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [30.0-30.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [496,403] Score: 0/0.18 # # Final direction: R [0,0.78 Confidence: HIGH] >NC_017046 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3097927 29 100.0 32 NNNNNNNNNN GT..........................T TTTTCAGCCCTTGTCGACTGCGGAACGCCCCT 3097988 29 100.0 32 NNNNNNNNNN ............................. GCGAAATAGTGGGGAAAAACCCCTGGTTAACC 3098049 29 100.0 32 NNNNNNNNNN .......................A..... TAGGCCTTGATACCATCGCTCGCACCTCGTCA 3098110 29 100.0 32 NNNNNNNNNN ............................. GTTTATTACTGCTTAGTTAATTAATGGGTTGC 3098171 29 100.0 32 NNNNNNNNNN ............................. AGGCGAATAATCTCTAATAGTCTCAATTCGTT 3098232 29 100.0 32 NNNNNNNNNN ............................. TAAATCTGGCGTCGAGACATTCGAAATAGTGC 3098293 29 100.0 32 NNNNNNNNNN ............................. TCTTTTGATTTTGCTGCGATGTTATAACCAGA 3098354 29 100.0 32 NNNNNNNNNN ............................. TATCCACATATACCCGCAATCATATTCAAGAA 3098415 29 100.0 32 NNNNNNNNNN ............................. AATCACTGCGGGGGTATTTAGCGGAAACGGCT 3098476 29 100.0 58 NNNNNNNNNN ............................. GATCGAGTAACGTGCGCTGGAACGCGCACCTCGAAACGGTTTTAAAACACTACCGTTT 3098563 29 100.0 32 NNNNNNNNNN ............................. TGGACCGATGGGGCCAACATCGCCGAACGTGG 3098624 29 100.0 32 NNNNNNNNNN ............................. GTTACGTTCGGTAAATGGAAAGCGGCGAATAT 3098685 29 100.0 32 NNNNNNNNNN ............................. CCAGAAAGTGCCGGTAGTGCCTGATGAACGAC 3098746 29 100.0 32 NNNNNNNNNN ............................. CGCGCCCACTTCCGTAAAATACAGATAATCCA 3098807 29 100.0 32 NNNNNNNNNN ............................. GGCAGCGGGCGAGGCAAACACATTCGGGGCGT 3098868 29 100.0 32 NNNNNNNNNN ............................. GGTAATTTCTCATCTAACAGCCTGTACGCCTC 3098929 29 100.0 32 NNNNNNNNNN A............................ GAATCTAATGCAACAGATGAATAAACACGTAA 3098990 29 100.0 32 NNNNNNNNNN ............................. TCTTTATCGTCAATGCGAAATTTTCCGCGACG 3099051 29 100.0 32 NNNNNNNNNN ............................. TCCCATTCACCAACAACAATATCGCCCTGCAA 3099112 29 100.0 32 NNNNNNNNNN ............................. ACTTCCTTCAGTCTTAACGATAATCCGCAACG 3099173 29 100.0 33 NNNNNNNNNN ............................. GCAAAATAGCGATGAGCTGGCTACGCCCACTGG 3099235 29 100.0 32 NNNNNNNNNN ............................. CAGCACGAAAAATTATTTACTGTCGTTGCTCA 3099296 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 23 29 33 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [16,98] Score: 0.18/0.18 # # Final direction: R [0,2.1 Confidence: HIGH] >NC_017046 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3115456 29 100.0 32 NNNNNNNNNN AC.GC.....TT.T............... ATCTTCATATTGCGTGACGCTGCCGATGAACG 3115517 29 100.0 32 NNNNNNNNNN ............................. TCTTTATCAGCTAACCATTTCCAGAACTCGTC 3115578 29 100.0 32 NNNNNNNNNN ...........T................. TATAATATGAATTAATTTTTGCGCATAACCTG 3115639 29 100.0 33 NNNNNNNNNN ............................. GCAGCTTAGCGACGAAATTAAAACCGAACTCAC 3115701 29 100.0 32 NNNNNNNNNN ............................. TGCCAGTGACTACAGAAGCGTCTCTATCGGGG 3115762 29 100.0 32 NNNNNNNNNN ............................. ACCGATAAACAACCGCATAGCCTCTTTCGTTT 3115823 29 100.0 32 NNNNNNNNNN ..A........T................. TGCTCAATAACGTCGTAAATAGCGTAAGCTGG 3115884 29 100.0 32 NNNNNNNNNN ............................. TATTTCGCCTTCGGCACTGACGTCACCGTCAA 3115945 29 100.0 32 NNNNNNNNNN ............................. GTCGCGTTCGTTGCCGGTATAGACCAGCGTCA 3116006 29 100.0 32 NNNNNNNNNN ............................. ATCGAATCGAAACCCCAGCCACAGAAATAATT 3116067 29 100.0 32 NNNNNNNNNN ............................. ATCGAATCGAAACCCCAGCCACAGAAATAATT 3116128 29 100.0 32 NNNNNNNNNN ............................. GCTCATGTCAAACGCCATCAGCGTTCCGGCAT 3116189 29 100.0 32 NNNNNNNNNN ...............A............. AATCGCCAGCCTCGGAAATATTCCATCCTCCG 3116250 29 100.0 32 NNNNNNNNNN ............................. AGGAACTAAACAGCCTGACCGTTGAGGATCTG 3116311 29 100.0 32 NNNNNNNNNN ............................. ACCGGACAAATCTTTTTTTTCCTGTTCCTGTT 3116372 29 100.0 32 NNNNNNNNNN ............................. GGGCACTATGAACGGATCGGCGCTGATGCCGG 3116433 29 100.0 32 NNNNNNNNNN ............................. GGTAAAGCCACACCATTTTTTATTGACCTCGC 3116494 29 100.0 32 NNNNNNNNNN ............................. CTAGGAGGCGTAATGAATACTACGTATCAAAA 3116555 29 100.0 32 NNNNNNNNNN ............................. GTGGTGGCCTCAAATAAATTCGAGCGCTGGAG 3116616 29 100.0 32 NNNNNNNNNN ............................. TCGACGTGGACGAGGAGTTACTCAACCGCTGC 3116677 29 100.0 32 NNNNNNNNNN ............................. AAATGACCAAATCAGAAATCTTCACCAAAGCC 3116738 29 100.0 32 NNNNNNNNNN ............................. GATGTAACTGATAGCGAAATATATTGGGATAA 3116799 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 23 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [61.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [984,298] Score: 0.18/0.18 # # Final direction: R [0.18,1.92 Confidence: HIGH] >NC_017053 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 781761 36 100.0 30 NNNNNNNNNN .................................... AATCCAATGATTTTAAATTTAGTGAAGACT 781827 36 100.0 30 NNNNNNNNNN .................................... TGACGAAATTATTAAACGTTGTTCTGGGGA 781893 36 100.0 30 NNNNNNNNNN .................................... CAGTCATTAAGTATGCGGACTTAGTTAAGC 781959 36 100.0 1 NNNNNNNNNN .............................T.C.TT. NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 4 36 30 GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: F [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-2.20,-0.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [104,114] Score: 0/0.18 # # Final direction: F [1.55,0 Confidence: HIGH] >NC_017030 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 8065555 19 100.0 23 NNNNNNNNNN .......GC......GA.. CGCCGAGGCCGCGCCCATCGAAG 8065597 19 100.0 29 NNNNNNNNNN ................... GACGGAAGCCACCGCGCCCGTCGTCGCCG 8065645 19 100.0 23 NNNNNNNNNN .....T........A.G.. CGAAGAGGCCGCACCGGTCGCCG 8065687 19 100.0 23 NNNNNNNNNN .A................. GGAAGAAGCTGCTCCGATCGAGG 8065729 19 100.0 23 NNNNNNNNNN ................... GGAAGAGACCGCGCCTGTTTCAG 8065771 19 100.0 23 NNNNNNNNNN .....T............. CACGGACGCGACGCCTGCCGCCG 8065813 19 100.0 35 NNNNNNNNNN .......G........G.. GACCGACAGCACCACGGAGGCCGCGCCGATCGAGG 8065867 19 100.0 26 NNNNNNNNNN .C.....T........... GGAAGAAGGCGCCGCGCCCGTCGCCG 8065912 19 100.0 26 NNNNNNNNNN ................... GACGGAAGCCGCCACGCAGACGGCAC 8065957 19 100.0 26 NNNNNNNNNN .....T.G......T..G. GACCGAAGAGGCAGCGCCCATCGAAG 8066002 19 100.0 23 NNNNNNNNNN ................... CGAGGAAGCCGCGCCCGTCGCGA 8066044 19 100.0 26 NNNNNNNNNN .....T.T..T........ GGAAGAAGCCGCCGCGCCTGTCGCTG 8066089 19 100.0 23 NNNNNNNNNN .T.....G.........G. CGGAGAGGCCGCACCTGTCTCGG 8066131 19 100.0 26 NNNNNNNNNN .......T..A........ CGAGGAAGCCGCCGCGCCCGTCGCTG 8066176 19 100.0 20 NNNNNNNNNN .A...T....A......G. CGAAGAGGCCCCCATCGAAG 8066215 19 100.0 23 NNNNNNNNNN ................... CGAGGAAGCCGCGCCCATCGAAG 8066257 19 100.0 26 NNNNNNNNNN ................... GACGGAAGCCACCGCGCCTGTTGCCT 8066302 19 100.0 26 NNNNNNNNNN ................... CACGGAAGCCGCTGAGCCTGTTGCCG 8066347 19 100.0 23 NNNNNNNNNN .A...T.G........... GGAAGAAGCCGCGCCCATCGAAG 8066389 19 100.0 26 NNNNNNNNNN .A................. GACAGAAGCCACCGCGCCTGGTGCCT 8066434 19 100.0 23 NNNNNNNNNN .....T.G........... GGAAGAAGCCGCGCCCATCGAGG 8066476 19 100.0 26 NNNNNNNNNN .A................. CACGGAAGCCACCGCGCCTGTTGCCT 8066521 19 100.0 23 NNNNNNNNNN ................... TGAGGAAGCCGCGCCCGTCACCG 8066563 19 100.0 23 NNNNNNNNNN ..........A........ GGAAGAAGCCGCGCCCATTGAAG 8066605 19 100.0 26 NNNNNNNNNN ................G.. CACGGAAGCCACTGCGCCTGTTGCCG 8066650 19 100.0 23 NNNNNNNNNN .....T.G.........T. GACGGAAGCCGCGCCCGTCGCCG 8066692 19 100.0 23 NNNNNNNNNN ....A..T..A......G. GGCCGAAGAAGCCCCCATTGAGG 8066734 19 100.0 23 NNNNNNNNNN .T................. CGAGGAAGCTGCCCCCGTCGCCG 8066776 19 100.0 23 NNNNNNNNNN .A.....T.........G. GGCGGAGGAGGCCCCGATCGAAG 8066818 19 100.0 26 NNNNNNNNNN .T.....G........... GACGGAAGCCGCCACGCCCGTCGTCG 8066863 19 100.0 23 NNNNNNNNNN .......T..A........ CGAGGAAGCCGCGCCCATCGAAG 8066905 19 100.0 26 NNNNNNNNNN ................G.. CACGGAAGCCGCTGAGACTGTTGCCG 8066950 19 100.0 23 NNNNNNNNNN .......T..A......G. CGCTGAAGAGGCTCCGATCGAAG 8066992 19 100.0 26 NNNNNNNNNN .T.....T........G.. CACGGAAGCCGCCACGCCCGTCGCTG 8067037 19 100.0 23 NNNNNNNNNN .T........A........ GGAAGAAGCCGCGCCCATCGAAG 8067079 19 100.0 26 NNNNNNNNNN .......T..A........ GACGGAAGCCTCCGCGCCCGTCGCCG 8067124 19 100.0 23 NNNNNNNNNN .................G. CGCCGAAGAAGCTCCCATCGAAG 8067166 19 100.0 1 NNNNNNNNNN ..........A.....GG. NNNNNNNNNN ========== ====== ====== ====== ========== =================== 38 19 24 CGCAGCCCGAGTGGGCCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [3,1] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis suggestion: F [23-31] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [28.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [3156,1199] Score: 0.18/0.18 # # Final direction: F [1.23,0 Confidence: HIGH] >NC_017033 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 2525823 20 100.0 46 NNNNNNNNNN .GT.AT.............. CGGTACGGTCTCGGCTTACGACAAGACCAAGGAAGGCAGCAAGAAG 2525889 20 100.0 46 NNNNNNNNNN CTT...............AG CGGAACCGAAAAGGCTTACGACAAGACCAAGGACGGTTCCGAAAAA 2525955 20 100.0 46 NNNNNNNNNN .................... AGGCACCACCAAGGCCTGGGACAAGACCAAGGAAAAGTCGACCAAA 2526021 20 100.0 46 NNNNNNNNNN .................... AAAGAGCCAGGAAATCTCCGACAAGAGCAAGAACGGCGGTGACACC 2526087 20 100.0 46 NNNNNNNNNN .................... AGGTACTACCAAGGCCTGGGACAAGACCAAGGAGGGTACCACCAAG 2526153 20 100.0 1 NNNNNNNNNN ..T........A........ NNNNNNNNNN ========== ====== ====== ====== ========== ==================== 6 20 46 GCCTGGGACAAGACCAAGGA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [7,1] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [30.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [389,244] Score: 0/0.18 # # Final direction: R [0.37,0.68 Confidence: LOW] >NC_017030 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =========================== ====== 859639 27 100.0 45 NNNNNNNNNN ..............C..G.ACTG.AA. GCCGTGCCCGGGCCCCCGCTCAGGCCGCGCGGCGGAAACCTGTCC 859711 27 100.0 42 NNNNNNNNNN .................G....G..A. TGGTCGGAGCCTCCGCTCCATCCAGGCGGCGGGAGCTTGTCG 859780 27 100.0 43 NNNNNNNNNN .T......................... CGGCCGGAGAACCTCCTCCCCATGCGGGCGGAAGAACGTGTCC 859850 27 100.0 47 NNNNNNNNNN .................CAAG.....A CGGTCGAGGGCCTCGACTCCATCCATCCAGGGGGCGGAAACCTGTCC 859924 27 100.0 42 NNNNNNNNNN ............A...GG....G..AA TGACCGGAGACCTCTGCTCCATCGAGCAGCGGAAACCTGTCG 859993 27 100.0 41 NNNNNNNNNN ........................... TGACCGGAGCCCCGCCTCAACTGAGCAGCGGAAACCTGTCG 860061 27 100.0 41 NNNNNNNNNN ................C.......... TTGCCGAGGGCCCGCCTCGGCTGCGCGGCGAAAAGCTGTCG 860129 27 100.0 41 NNNNNNNNNN ........................... TGACCGGAGCCCCGCCTCAACTGAGCAGCGGAAACCTGTCG 860197 27 100.0 34 NNNNNNNNNN ................C.......... TTGCCGAGGGCGCCGCTCCAGCGGGACGGCGGAA 860258 27 100.0 43 NNNNNNNNNN AC.T.............G....G.... TGGCCGGAGCGCCTCCGACCCATCCGGGCGGATGAACTTGTCC 860328 27 100.0 1 NNNNNNNNNN ...................AG...... NNNNNNNNNN ========== ====== ====== ====== ========== =========================== 11 27 41 GACAGTCGGACAGGTTTTGGAGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [7,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [17-9] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [35.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [353,39] Score: 0.18/0.18 # # Final direction: F [0.82,0.41 Confidence: MEDIUM] >NC_017034 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1139127 37 97.3 34 AGTTGAATAT -.................................... CGGCTCTCAGAAACCTAAAACTAATCGGTTACAG 1139198 37 100.0 35 TCGGTTACAG ..................................... TTCCCAGACCAGCAAGCCCAATGTGGTGTCCCCGC 1139270 37 100.0 38 GTGTCCCCGC ..................................... TGGCAGGCCGAGCTGGTAGTGGAGGGCAGGTATACCCT 1139345 37 100.0 36 GGTATACCCT ..................................... TCTCACCCGCTCGTAGACCCCAAGTGGGTTGAGCTG 1139418 37 100.0 38 GGTTGAGCTG ..................................... CGGCTGGAAAACGTGAGCAAGAACATCCTCCCAGAGGT 1139493 37 100.0 35 TCCCAGAGGT ..................................... TACTACCTCCTCGCAGAACACGTAGAACCGGTCAG 1139565 37 100.0 34 AACCGGTCAG ..................................... TCAATTTGGGATTATTATGAGTGATAAGGATATG 1139636 37 100.0 36 TAAGGATATG ..................................... TCATTCTTATACCCGACCACAAATTCCAAGACGTGT 1139709 37 100.0 37 CAAGACGTGT ..................................... GGAAGGATGATACGGGGGGTAGTGGGAAGGGTGAGAA 1139783 37 100.0 36 AGGGTGAGAA ..................................... GTTATAAAAAAACTCCATGGAAAATTCCCTGGCCAG 1139856 37 100.0 36 CCCTGGCCAG ..................................... ATTCAAATAGACTCTTATTTCCTCAAGTTTTTTTTG 1139929 37 100.0 38 GTTTTTTTTG ..................................... GAAGGCAAGAACATGATATGGTCAACAATACATTGGTC 1140004 37 100.0 36 TACATTGGTC ..................................... CGATAGGCCCGGACAGGGCCGCCATGCTACTTATAA 1140077 37 100.0 36 CTACTTATAA ..................................... CGATATGCCCGGACAGGGCCGCCATGCTACTTATAA 1140150 37 100.0 37 CTACTTATAA ..................................... ATAGCCAATAAATTTGGTTCTAACAAACAAAAACCCA 1140224 37 100.0 38 CAAAAACCCA ..................................... AACAGTATCAGGGGCATCATCAGGCGCATGTTGATGCG 1140299 37 100.0 35 TGTTGATGCG ..................................... AAATAATAAAAAAATAGAACAAGAAACCCAAGAAC 1140371 37 100.0 36 ACCCAAGAAC ..................................... TACAATATTCGACCATCCTCCCCAATGGGGCTGCGT 1140444 37 100.0 36 GGGGCTGCGT ..................................... CACCATCCTGTTTATATTTATAGTGAGGGATAAATA 1140517 37 100.0 35 GGGATAAATA ..................................... CCGAACACGCCAGCCAGATTGACGGGTAGCAAAGA 1140589 37 100.0 36 GTAGCAAAGA ..................................... AAGGACTTTCTAACTTCTCTAAAAATCGCCTTACGT 1140662 37 100.0 36 CGCCTTACGT ..................................... TTTGGACAACGCCGCCACAAGTGTTGAAATGTTGAA 1140735 37 100.0 36 AAATGTTGAA ..................................... CATCCTAACTTTTGACGAGTTAGTAAAAACCTATAA 1140808 37 100.0 37 AAACCTATAA ..................................... ACCTAATCAACGGCATCCAAATCCACCACCAAAGGCA 1140882 37 100.0 38 ACCAAAGGCA ..................................... AACAGCCAGATAGAATGGAGTCTAATGATGGTGTTAAA 1140957 37 100.0 33 TGGTGTTAAA ..................................... CGGTTATGCCCTCAAGTATTTTACCGATATCGT 1141027 37 100.0 35 CCGATATCGT ..................................... TTTGCAGATTCATATATCCGGTTTTATTCACGATT 1141099 37 100.0 36 ATTCACGATT ..................................... ACCCAAACAAGGAGGGAATATAAATATGGCAACTTT 1141172 37 100.0 37 TGGCAACTTT ..................................... GTGGCGCCCATCCTCTGTTCCATGTACTGTTTAAATC 1141246 37 100.0 36 TGTTTAAATC ..................................... CCCTATTGTTAGCAATTATTTAACATTTGCTAACAA 1141319 37 100.0 35 TTGCTAACAA ..................................... ATACGCGTCCAAATCGAGATGAGCCGCGCACTAAA 1141391 37 100.0 36 GCGCACTAAA ..................................... TGCCCTGGAGGGTTGACGGGTACCGCGTCTACCGGG 1141464 37 100.0 36 GTCTACCGGG ..................................... CAGTGGGGAGCCTATACGTTATGACGCCTAATGGGT 1141537 37 100.0 37 CCTAATGGGT ..................................... TGGTAATGACGTCTAGCGGCGAAGGCACGATCCGAAT 1141611 37 100.0 36 CGATCCGAAT ..................................... CAGACTGGCGAGCGCGTCGGCTACTGGGACGCCCGT 1141684 37 100.0 35 GGACGCCCGT ..................................... TGTGGTAGTAGTGTTGTAGGCGAGACGTGGGTGGT 1141756 37 100.0 37 CGTGGGTGGT ..................................... TTTGTTATCTTGTTCGGCTTCGGGGTTGTGGTCACGA 1141830 37 100.0 37 GTGGTCACGA ..................................... GGATGGTCCTCGTGCCAGGTGGATACGCAACCCTCAC 1141904 37 100.0 36 CAACCCTCAC ..................................... ACCGTCAGGATAGGCTATACATGCCCGTCAGACCGG 1141977 37 100.0 36 GTCAGACCGG ..................................... GCTGTTCCAAGGCTCTCGCCTTAGGGTGCTCGTGTA 1142050 37 100.0 36 TGCTCGTGTA ..................................... TAAGAAGTATGGTTACACTATTGTTAAGCATGTTGT 1142123 37 100.0 37 AGCATGTTGT ..................................... GTCAAAGTATATTTTAGCCAAGACCCCGCTGACATTA 1142197 37 100.0 36 GCTGACATTA ..................................... ACAATTAAAACCGCCTTTACGTGAGGCGAAAAGGAG 1142270 37 100.0 37 CGAAAAGGAG ..................................... AACACGGTGACCATCCACCATTTATATATTATCAAAA 1142344 37 100.0 37 ATTATCAAAA ..................................... GTATTGGGGATGCTTTCAATGGCGTAGTAATTTATAT 1142418 37 100.0 36 TAATTTATAT ..................................... ATAGAAGAATAGGATATGGTCATAATATGGCGAAAA 1142491 37 100.0 36 ATGGCGAAAA ..................................... ACAAAAGTATGCCCAATACATAAAAAAGGTTAGTAC 1142564 37 100.0 36 AGGTTAGTAC ..................................... TAGTTCGTGGTAGTATCCTAGTATCCCCCACAACGT 1142637 37 100.0 37 CCCACAACGT ..................................... CTCACCTGTATGATGGCGTGGCGGGGCGCGTAACCCT 1142711 37 100.0 37 GCGTAACCCT ..................................... CAAAATACTGCGCGGAAACAATGATAGAAAAAATAAA 1142785 37 100.0 36 AAAAAATAAA ..................................... TGCTTATATAAACGAGGCCTCGGAGCTCACGTGGCA 1142858 37 100.0 37 TCACGTGGCA ..................................... GGGCCTCACACCATTACTAGTAATCCACCGGAACAAT 1142932 37 100.0 37 CCGGAACAAT ..................................... GGGCCTCACACCATTACTGGTAATCCACCGGAACAAT 1143006 37 100.0 35 CCGGAACAAT ..................................... ATTGGGAGGCGCGGAGTACCAGCCCAGCCATACAT 1143078 37 100.0 38 AGCCATACAT ..................................... GCTGTGCATGCCGCCCCACCCGGGCAACGCCGACAACT 1143153 37 100.0 35 GCCGACAACT ..................................... GAGGAAGACGGGGTGCCCTCACCACAAGACGAGGA 1143225 37 100.0 35 AAGACGAGGA ..................................... TGGTTCACGGGGGTGCCCGGGCTTGACGTGCTAAC 1143297 37 100.0 35 ACGTGCTAAC ..................................... TGGTTCACGGGGGTGCCCGGGTTTGACGTGCTAAC 1143369 37 100.0 35 ACGTGCTAAC ..................................... GGGTTCAACGCCCACTTATACTCCCACATATACGC 1143441 37 100.0 35 ACATATACGC ..................................... GGGTTCAACGCCCACTTATACTCCCACATATACGC 1143513 37 100.0 36 ACATATACGC ..................................... CGTGCCGTCGACGCTTCCCTGGAACGCCAGGTTCGC 1143586 37 100.0 36 CCAGGTTCGC ..................................... TTGTCGGCTCGTGGTCTAATGGGTTGTCCGGCCAGT 1143659 37 100.0 35 TCCGGCCAGT ..................................... CACTGGTACGAACTCGACGCCGGGCGGCGAATTCG 1143731 37 100.0 36 GGCGAATTCG ..................................... CCTCTGTGAGCGCATAAAAAAACTGCTTGTTGATAA 1143804 37 100.0 36 TTGTTGATAA ..................................... GGCACGAACTACTATGACGTGTACATGGATGGTAGC 1143877 37 100.0 38 GGATGGTAGC ..................................... GTAGCTGTACACACCGCCACTGGGGTGGCGGCTGCAAG 1143952 37 100.0 36 CGGCTGCAAG ..................................... CCTCGAAACGGGCGTCGAATCAGCCCACACGGAGCT 1144025 37 100.0 38 ACACGGAGCT ..................................... CAACGAGGAGGCGAGGATATGACTGACAATGGTCTCCA 1144100 37 100.0 37 ATGGTCTCCA ..................................... GCCCTTCAACGGCTCATAGGCTGTGTTGCTCATGTTA 1144174 37 100.0 37 GCTCATGTTA ..................................... AGGGAGTTGAACGACCTGGCCCAGAAGCAGGAGAAGA 1144248 37 100.0 37 CAGGAGAAGA ..................................... GGGGGCCACGCCCTCATGATAATCGGCTACGATGACA 1144322 37 100.0 36 TACGATGACA ..................................... ACCCCTACACGGCGGACGACTACAACACGGTTAGGA 1144395 37 100.0 36 ACGGTTAGGA ..................................... GCCCCACAACGGGTACATCACCTTCGACGTGGACGG 1144468 37 100.0 36 ACGTGGACGG ..................................... CCTCGAAGCGGCGAAAGAACGTATTTCATGGGAATT 1144541 37 100.0 36 CATGGGAATT ..................................... CCTCGAAGCGGCGAAAGAACGTATTTCATGGGCATT 1144614 37 100.0 35 CATGGGCATT ..................................... CATCTGGTCGACGAGATACAAGATGGGCATATCGT 1144686 37 100.0 35 GGCATATCGT ..................................... GGGGTCATCTGGGACGCCCAGGGGCGTACCCAGGA 1144758 37 100.0 37 GTACCCAGGA ..................................... CCGCATGACAGGTTCTCCATCCATGGTCTCCCCCGTC 1144832 37 100.0 36 CTCCCCCGTC ..................................... GGTTGGTGAAAATATGCAAATGACAGAGAATATGAC 1144905 37 100.0 38 AGAATATGAC ..................................... CAGGGAGGAATCCCTGTCCAGGTATAGTACGAAGCTCA 1144980 37 100.0 36 ACGAAGCTCA ..................................... GGTGAGGAACGCTGCGAACACGATACTAGGCGTCAT 1145053 37 100.0 TAGGCGTCAT ..................................... CGCCAAAAA ========== ====== ====== ====== ========== ===================================== 82 37 36 CTTTCAATCCTCATTTTGCGAGGACACATTTTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.16%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.00,-7.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [294,119] Score: 0.18/0.18 # # Final direction: R [0.45,5.28 Confidence: HIGH] >NC_017044 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 887821 20 100.0 19 NNNNNNNNNN .................... AGTGTTATTTTCCGGTAAA 887860 20 100.0 31 NNNNNNNNNN ..............A.G... AGGTGGTGATGGAGTGTTATTTTCCGGTAAA 887911 20 100.0 19 NNNNNNNNNN .................... AGTGTTATTTTCCGGTAAA 887950 20 100.0 1 NNNNNNNNNN .................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================== 4 20 23 GGAGGTGGAGGTGGTGATGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [498,1104] Score: 0.18/0.18 # # Final direction: R [0,1.23 Confidence: HIGH] >NC_017045 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1855898 36 100.0 30 TTCATGATCT .................................... ATAGCAGTAGAACCATCAAACGCTGTGGCT 1855964 36 100.0 30 CGCTGTGGCT .................................... CGGCAACAAAAGAAGGAGAAGAACAAAGCA 1856030 36 100.0 30 GAACAAAGCA .................................... AGCAACATATACGAAAATCCAGAAATCTTA 1856096 36 100.0 30 AGAAATCTTA .................................... TGTGCTTCCTACAACGAGTAGCGTTCCTTT 1856162 36 100.0 30 GCGTTCCTTT .................................... TTAACTAAGTTACCTAGAAGTATAAATGAA 1856228 36 97.2 30 TATAAATGAA ...................A................ TCTGCATCTACGAAGGTGATGAGGAAAAGG 1856294 36 97.2 30 GAGGAAAAGG ...................A................ CAATAGGACCTATTATATTTACAACAACAG 1856360 36 97.2 ACAACAACAG ...................A................ ATTTTGAAAATATAGAGGCGATAAGCCTTTGTTGTGAATACCCTTCAAAATGAGAGCAGTCCCAACTAAGAACTTTGTAGATGAAAGTGGTAATCTGTTGTGAATACCCTTCAAACTGAGAGCAGTCCCAACATTCTAAAAGGTACAGAGAATGAAGCTAAAGTTGTGAATACCCTTCAAACTGAGAGCAATCCCAACTCAACCAATTTAATCTGCAACTCTGAAATGGTTGTGAATACCCTTCAAACTGAGAGCAGTCCCAACTGATAGGAATATTTCTTATTCTATTTTTTAGTTGTGAATACCCTTCAAAATGAGAGCAGTCCCAACTCACAAACGGAAAAATATGTTTATTCCGTTGGTTGTGAATACCCTTCAAAATGAGAGCAGTCCCAACTTAGGAGCAAATAAGCTGTATTTATTGGT ========== ====== ====== ====== ========== ==================================== 8 36 30 GTTGTGAATACCCTTCAAAGTGAGAGCAGTCCCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-5.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1260,527] Score: 0.18/0.18 # # Final direction: R [0.18,0.37 Confidence: MEDIUM] >NC_017045 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================================== ====== 1020413 47 91.5 30 AACAGTAATA -..A..................C...............A........ TATCTGCACAGGAGAAAATAGAGTCAATCA 1020490 47 95.7 30 GAGTCAATCA ......................C...............A........ GTCCGTTGTCGGTTCATCTGATACTATATC 1020567 47 95.7 30 ATACTATATC ......................C...............A........ TGGGATTTGACAAAACCTTACCTCAAAGAC 1020644 47 95.7 30 CCTCAAAGAC ......................C...............A........ ATTTTACACGAAGATAAAGAGATGTATCTA 1020721 47 100.0 30 GATGTATCTA ............................................... TAAATGTTTATTTATAGTTTGTTCGGTGTA 1020798 47 100.0 30 GTTCGGTGTA ............................................... TCCCCCATCCGCTTTCAAGAGCTGCCTGTG 1020875 47 100.0 30 GCTGCCTGTG ............................................... GCAATGAATAACTATATGGAAGCCTTGAAA 1020952 47 100.0 30 AGCCTTGAAA ............................................... AACATTGCAATAAAACTAATAAACGAAGTA 1021029 47 100.0 30 AAACGAAGTA ............................................... ATAGACGAGATTGAGATATGACAACACCTC 1021106 47 100.0 30 ACAACACCTC ............................................... GATTTTCAGCTAATTAAATTATTTAATAAA 1021183 47 100.0 30 ATTTAATAAA ............................................... GACAAAATAAAACAGATGTGCGATGGGATA 1021260 47 100.0 30 CGATGGGATA ............................................... AACTACTTTCTAAAGCATTACAATTAAGAA 1021337 47 100.0 CAATTAAGAA ............................................... CTCAAAAAAT ========== ====== ====== ====== ========== =============================================== 13 47 30 GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.09%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.10,-6.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [4,108] Score: 0.18/0.18 # # Final direction: R [0.37,5.09 Confidence: HIGH] >NC_017045 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1856426 36 100.0 30 ATAAGCCTTT .................................... TAAGAACTTTGTAGATGAAAGTGGTAATCT 1856492 36 97.2 30 GTGGTAATCT ...................C................ ATTCTAAAAGGTACAGAGAATGAAGCTAAA 1856558 36 94.4 30 TGAAGCTAAA ...................C........A....... TCAACCAATTTAATCTGCAACTCTGAAATG 1856624 36 97.2 30 CTCTGAAATG ...................C................ TGATAGGAATATTTCTTATTCTATTTTTTA 1856690 36 100.0 31 CTATTTTTTA .................................... TCACAAACGGAAAAATATGTTTATTCCGTTG 1856757 36 100.0 TATTCCGTTG .................................... TTAGGAGCAAATAAGCTGTATTTATTGGT ========== ====== ====== ====== ========== ==================================== 6 36 30 GTTGTGAATACCCTTCAAAATGAGAGCAGTCCCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-5.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [478,130] Score: 0.18/0.18 # # Final direction: R [0.18,0.37 Confidence: MEDIUM] >NC_017059 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1577453 28 100.0 33 TACAGGGAGG ............................ CTGGTCCGCAACCCGCACATCGACGCGCAGCGA 1577514 28 100.0 33 CGCGCAGCGA ............................ CAGGACTCTGATCTGTGGCCGCAGATGCGCTAC 1577575 28 100.0 33 GATGCGCTAC ............................ CAAGGACTATATCGTGCCATTTCCCGCGCTGCT 1577636 28 100.0 33 CCGCGCTGCT ............................ CTATGGGACCTCGCGGCCACAGTCGGGAATGAC 1577697 28 100.0 33 CGGGAATGAC ............................ CTCGTGGGAGAAGCTTGGTGTCCAGGGGGACTT 1577758 28 100.0 33 AGGGGGACTT ............................ TGACGCTCTCAAGGCCGACCAGAAAGACGTCAT 1577819 28 100.0 AAGACGTCAT ............................ ACCTCTTGGC ========== ====== ====== ====== ========== ============================ 7 28 33 GTATCCCCTGCATGCGCAGGGATGAACC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [46.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [336,907] Score: 0.18/0.18 # # Final direction: F [0.64,0.18 Confidence: MEDIUM] >NC_017059 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2386071 29 96.6 32 CCTATGGGGT -............................ CTGGGCGGCGGTGCCCAGTATATGTTGCAAGA 2386132 29 100.0 32 TGTTGCAAGA ............................. ATCTGGAGCCGCTTAAAACTCGGTTCCCGCGC 2386193 29 100.0 32 GTTCCCGCGC ............................. TCTTCCGGCCGAGTAAAGTGCCCGTCCATCGC 2386254 29 100.0 33 CGTCCATCGC ............................. TGGCCCAAAAAGCGAGCGGGCGAGAGTGATATT 2386316 29 100.0 32 GAGTGATATT ............................. GGCAAAAATCCCTGCTAGTGACGCCGGATGCG 2386377 29 100.0 32 GCCGGATGCG ............................. CGTCCGACCTCCAGGCGCTTGCCGACGCCTAC 2386438 29 100.0 32 CGACGCCTAC ............................. CGACAAGATCGGGTCGAAAAATACGCTGATGC 2386499 29 100.0 32 ACGCTGATGC ............................. TGGGTAATCGTAGGATCGTTATAGATATCCTC 2386560 29 100.0 32 AGATATCCTC ............................. CTCTTGGAGAGCATTTTGGGGCACGAGGGGGG 2386621 29 100.0 31 ACGAGGGGGG ............................. TGTACCGCGAGGACTTTTTCGAGCGCCCGGC 2386681 29 100.0 32 AGCGCCCGGC ............................. CCCCCAACAAGGACGCGGTCGAGGCCAACCGC 2386742 29 100.0 32 GGCCAACCGC ............................. GGCCGAAACCGCGTCCCAGGACAAGGGCAGAG 2386803 29 100.0 32 AAGGGCAGAG ............................. TTGCCGGGGGGTTAGCTCGACATCCCAGAAGG 2386864 29 100.0 TCCCAGAAGG ............................. TCTTCCTGGA ========== ====== ====== ====== ========== ============================= 14 29 32 CGGTTCATCCCCGCGCAGGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-13.50,-12.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [36.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [66,68] Score: 0/0.18 # # Final direction: F [0.74,0.68 Confidence: LOW] >NC_017059 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3252482 28 100.0 33 CCCCGTTTCA ............................ GGGGCGAAGGGGACCAAGACGATGTCCGACAGG 3252543 28 100.0 33 GTCCGACAGG ............................ GTGTGATAGCCATATCCAATACCCCCTATTAGG 3252604 28 100.0 33 CCCTATTAGG ............................ GCTGCGGCATACCCTGGGGGGCGCACCCCCGAG 3252665 28 100.0 33 CACCCCCGAG ............................ ATTGCTTGGTTCCCCGAGACCAGGGCCGCAGAG 3252726 28 100.0 33 GGCCGCAGAG ............................ CAGACGCGACCACGCCGTCGCCGCCGTCGCAGC 3252787 28 100.0 CCGTCGCAGC ............................ CCTCATTGTA ========== ====== ====== ====== ========== ============================ 6 28 33 GGTTCATCCCTGCGCATGCAGGGGATAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [40.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [203,356] Score: 0/0.18 # # Final direction: R [0,0.64 Confidence: HIGH] >NC_017059 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 752663 30 100.0 31 ATGGAGATCG .............................. ATCACCGCGTCGAGTGGCTCCCGCCCCGGCA 752724 30 100.0 31 CGCCCCGGCA .............................. GTTACTACCCTTTCCGCTGCTGTTGCCGCCC 752785 30 96.7 GTTGCCGCCC T............................. CCTCTTTGTA ========== ====== ====== ====== ========== ============================== 3 30 31 AGGGTTCATCCCTGCGCATGCAGGGGATAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [6,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1266,390] Score: 0.18/0.18 # # Final direction: F [0.59,0.27 Confidence: MEDIUM] >NC_017068 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1013714 28 100.0 32 AGTTCTGCCA ............................ AAAGAAAAGATTAATCATGTCTCTGCCGTTTC 1013774 28 100.0 32 CTGCCGTTTC ............................ TGTAGCTTATCAGCCACTTTCTGCTGGCCTTT 1013834 28 100.0 32 GCTGGCCTTT ............................ TGAACAACGTTCGCTCGAACTCGAACAGCAAC 1013894 28 100.0 32 GAACAGCAAC ............................ TCTTGCCTTTACGCGGCTACTATCATTGACAC 1013954 28 100.0 32 TCATTGACAC ............................ AACAGCCCCCACCGTGCCTGTGACCTTGCCTG 1014014 28 100.0 32 ACCTTGCCTG ............................ AATCCCTACTCCTGCCATAAATATGCCATACC 1014074 28 100.0 32 ATGCCATACC ............................ GTAATAATCAAGCGGTAAAAAGTCAATCCTGC 1014134 28 100.0 32 TCAATCCTGC ............................ TGTTGAACCATCACCCAACCACACACCGAGAA 1014194 28 100.0 32 ACACCGAGAA ............................ TTGCGAATCTTCGTCCATGAATTGCAATTTAT 1014254 28 100.0 32 TGCAATTTAT ............................ AGCAGAAGAAAAAGCAAAGTTGGAGTTTGAGT 1014314 28 100.0 32 GAGTTTGAGT ............................ TTTCTCGCCTATCGCATGATAAGCCGCCTTAA 1014374 28 100.0 32 GCCGCCTTAA ............................ TATCGCGATGATTGATGCGAGCGTCAATATTG 1014434 28 100.0 33 GTCAATATTG ............................ CATCCAAAAGAAAATCGTCAGGACAACGTGGGG 1014495 28 100.0 33 CAACGTGGGG ............................ CACTATTAATCGCTTGTTGAATAGCCGCCGTAT 1014556 28 100.0 32 GCCGCCGTAT ............................ AACACTGACGGGCAGCTGAAAAGCAAAACTAT 1014616 28 100.0 32 GCAAAACTAT ............................ TGTCCAACCATTAAACAGACATTTTTCGACCA 1014676 28 100.0 32 TTTTCGACCA ............................ AAAGCCTGCAAAGCATTGCTCCACTCACCAAA 1014736 28 100.0 32 ACTCACCAAA ............................ CTTCAGCGCATTTTTGCTGACACCCGCGAGGG 1014796 28 100.0 32 CCCGCGAGGG ............................ TGCAACTTTCGATGCAGCAGCATCAGCCCATC 1014856 28 100.0 32 TCAGCCCATC ............................ TGCTGCAACCATTTCTTATATCTTTTCCGACA 1014916 28 100.0 32 TTTTCCGACA ............................ GTAATCAGACGGCCTACAATGCGGATGATAAT 1014976 28 100.0 32 GGATGATAAT ............................ AAAATCGGAAAAGTTTGCATTAGGTGCAGATA 1015036 28 100.0 32 GGTGCAGATA ............................ GATTACCTCACGCCAGTCTGCGACGTGATAAG 1015096 28 96.4 32 ACGTGATAAG T........................... GCATCCCGTGGTTCGGTCGTCGCTTGGCATCC 1015156 28 100.0 32 CTTGGCATCC ............................ TTGCCGTTCAGGGACAGAGTTGTTCAATGGGC 1015216 28 100.0 32 TTCAATGGGC ............................ TGGATAAGCGAGTCCAAAATAAAGCGGGAATG 1015276 28 100.0 32 AGCGGGAATG ............................ TATGCAACGGCGGTGGAAATTCTGGTTGAGTA 1015336 28 100.0 32 TGGTTGAGTA ............................ ATTGTTTGCTCGACTTGATAAACAGGCATTAT 1015396 28 100.0 32 CAGGCATTAT ............................ AGTATGGCTGAAATCATGGGCTTCCAAAAAGC 1015456 28 100.0 32 TCCAAAAAGC ............................ AAGAGCAGATGGAGAGGGTTCGATCGGAACGC 1015516 28 100.0 33 ATCGGAACGC ............................ TTCGGCTCCGGCCGTACCATTGACCTGCCTGCC 1015577 28 100.0 32 CCTGCCTGCC ............................ TAATGTGCTTTTTTTGTCTGTCATTTTCCCCG 1015637 28 100.0 32 ATTTTCCCCG ............................ ACACATCAACTTGAGCACCACATTCGCACCTG 1015697 28 100.0 32 TTCGCACCTG ............................ TTTACGCTTTGGGCTGTGTCAGAGTCCAACGA 1015757 28 100.0 32 AGTCCAACGA ............................ AATTGCCACCCGATAACGGGATACGTTTAACA 1015817 28 100.0 ACGTTTAACA ............................ AGGGGATTTT ========== ====== ====== ====== ========== ============================ 36 28 32 GTGTTCCGCCGTATAGGCGGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-10.10,-9.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [160,95] Score: 0/0.18 # # Final direction: F [0.78,0.64 Confidence: LOW] >NC_017075 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 704057 29 96.6 32 CCGTCAGCGT ...C......................... CTCCGGGGACACCCATGATCGAACTCCTCAGC 704118 29 100.0 32 ACTCCTCAGC ............................. TCGCTGCGGTCGTTATCCAGCAGCGCCAGGCG 704179 29 96.6 32 GCGCCAGGCG ........T.................... CAGTACTTGACGAAGTAGCGCCAGCCGCCGGT 704240 29 100.0 32 AGCCGCCGGT ............................. GAGCTGGGCAAGGTCGAACACGTGCGCTACGT 704301 29 100.0 32 TGCGCTACGT ............................. TCGCTCATCGCGCAGTGCCGCCCTCCAGTCGT 704362 29 100.0 32 CTCCAGTCGT ............................. CTCGAAGGCCCGCAGGGCATGGGGAAGTCGAC 704423 29 100.0 32 GGAAGTCGAC ............................. CTCAACGAGATGACCTCGATCGTGCGCGAGGC 704484 29 96.6 32 TGCGCGAGGC ...............T............. GTTCGTCGGCAAGCCGGAGCCCTACCGGAAGT 704545 29 96.6 32 TACCGGAAGT .....................A....... CTGGCCAAGGACGGCATCCGCGTCACGCACAT 704606 29 100.0 32 TCACGCACAT ............................. TGGCCGGAAAGCTGCGACATCGTGGTCGACAG 704667 29 100.0 32 TGGTCGACAG ............................. CGCCGGAGGCCGTCCTTCAGCTCCATCCAGCC 704728 29 100.0 32 CCATCCAGCC ............................. ACAGCATCGCGCAGCGCCGCGCGAAGCAGGTC 704789 29 100.0 32 GAAGCAGGTC ............................. GCCTCGGCCAGGGTCTTGGCGGTCTGCGCGCG 704850 29 100.0 32 TCTGCGCGCG ............................. GTCGTGGGTGGCACCTCGGCGCCCGACAGCTA 704911 29 100.0 32 CCGACAGCTA ............................. ATCTACGATCAGGCCGACAGCCTCACGATCGA 704972 29 100.0 32 TCACGATCGA ............................. GGCGCGTCGAGCGGGCTGCTCTTCCCCGTGTC 705033 29 96.6 32 TCCCCGTGTC ..................T.......... ATCCCCAACACCAGCGCCGGCACGCGCCCGAA 705094 29 100.0 33 CGCGCCCGAA ............................. GGCGAGCTTGGCTTCAGACCAGCGGCCGTCCAC 705156 29 100.0 32 GGCCGTCCAC ............................. TACCTGTGCCCGGCCGGCGTGCCGACGATCGG 705217 29 100.0 32 CGACGATCGG ............................. GCCACGAAGCACGGGACCACCATCGAAGGCGG 705278 29 100.0 33 TCGAAGGCGG ............................. CCAGTCGCCGCAGCACCCCCTTGGCCAGCACCG 705340 29 100.0 32 GCCAGCACCG ............................. TGGCCGACCGTGACCGTGACGCCAAGGCGCTG 705401 29 100.0 32 CAAGGCGCTG ............................. AGCGCCGCCCCCTTGTCGCCGGCTTTGAACTT 705462 29 100.0 32 CTTTGAACTT ............................. GTGCGCGCGAAGCGTGCGCTCGGCCTGGCCGA 705523 29 100.0 32 GCCTGGCCGA ............................. AGCATCAGCAGCAGGGCCTGGCTGTCCTCCAG 705584 29 100.0 32 TGTCCTCCAG ............................. TCGGCGTTGTCGGCGGCGACCTCGGTTTCCAT 705645 29 100.0 32 CGGTTTCCAT ............................. GCGATCGCGGCCGTTGATCTGGCGAGCCATGG 705706 29 100.0 32 CGAGCCATGG ............................. TGGGCTACATGAAGGACCGCATTGACGCCGAG 705767 29 100.0 32 TGACGCCGAG ............................. GTCTCCGCAGGCTCGACCGTCGTCGGCACGAT 705828 29 100.0 32 TCGGCACGAT ............................. TGGTGCGCTATGCGGCCGAGCGCGGGATCTCG 705889 29 100.0 32 CGGGATCTCG ............................. CGCCGGCAAACGGCGTCCGCAGCATCTTCGAT 705950 29 100.0 32 CATCTTCGAT ............................. ATCGCGTGATCGCGCTCAGTCATCTCGTGTCC 706011 29 100.0 32 TCTCGTGTCC ............................. CGCCGGCTGGCGCGCCGGCCTGGCGCACGGGG 706072 29 100.0 32 GCGCACGGGG ............................. GCCCGCAACCCGATGCGCAGCGTCGCGCCGGT 706133 29 100.0 32 TCGCGCCGGT ............................. CTGCCGACGCGCCCAATAGGCCCGCATCCGCT 706194 29 100.0 32 CGCATCCGCT ............................. GGCGCCATCGGCCAGCACCCACACATCGCAGC 706255 29 100.0 32 ACATCGCAGC ............................. CTCGCGCACCAGCGGATCACGCATCGGCGACG 706316 29 100.0 32 ATCGGCGACG ............................. CCGCCTTGCAGGGCGTGGGGCAGGTTGCGCCA 706377 29 100.0 32 GGTTGCGCCA ............................. GGCGGACAGCGTCCACATCTGCGACTGCTTCA 706438 29 100.0 32 GACTGCTTCA ............................. CAGCGCGGCAAGCGCCTCTGAGTTGAGGATCA 706499 29 100.0 33 TTGAGGATCA ............................. TTCAACCCGCAGTCGCCGCACATGACGTCAAGG 706561 29 100.0 32 GACGTCAAGG ............................. GTGTCCCGTGAACTCGATCTCTACGTAGGCGA 706622 29 100.0 32 ACGTAGGCGA ............................. CGCTCTAGTCAGCGTTGATGGGGCAACGCCAA 706683 29 100.0 GCAACGCCAA ............................. TGCGAAATGG ========== ====== ====== ====== ========== ============================= 44 29 32 CGGTTCATCCCCACCCGCGTGGGGAACGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [4,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-10.70,-12.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [26.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [237,142] Score: 0/0.18 # # Final direction: R [0,1.05 Confidence: HIGH] >NC_017075 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 708990 29 100.0 32 TATTCGGAGA ............................. CCGCGTGGTCAACTCATGCTCACCTTTGGTGC 709051 29 100.0 32 CCTTTGGTGC ............................. TCGGCATCAGTGAAGATGCCGTGCTCAAACGC 709112 29 100.0 32 GCTCAAACGC ............................. GCTGATCACGGCGCGCGCGCGCGACCCATTCG 709173 29 100.0 32 GACCCATTCG ............................. GATCGCGCCCTCTTCATCGGTTGCATTGCCGC 709234 29 100.0 32 GCATTGCCGC ............................. TGCGACGCTGCTCAACCTGAACGCCCTGCTGC 709295 29 100.0 32 GCCCTGCTGC ............................. GACGAGTGGACCGCGCGCCAGCCCTGGGAGAG 709356 29 100.0 32 CCTGGGAGAG ............................. CGCTGCTGTTCGGCGTCGGTGTAGCGGCTGGG 709417 29 100.0 AGCGGCTGGG ............................. ACTTCCTCCA ========== ====== ====== ====== ========== ============================= 8 29 32 CGGTTCATCCCCACCCGCGTGGGGAACGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [4,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-10.70,-12.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [40.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [89,82] Score: 0/0.18 # # Final direction: R [0,0.64 Confidence: HIGH] >NC_017079 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1517528 37 100.0 40 CGATCTATCG ..................................... TGAGAATCGTCACGAATACGGCCTTGCGGCGCTTACCACG 1517605 37 97.3 40 GCTTACCACG ...............T..................... CACTGATCTGGTACGCAAACTCTGGAGGACGGCCGTCATA 1517682 37 100.0 40 GGCCGTCATA ..................................... TGTGGGAGAAAATACCAACACCTTGGGGCGAGATTTTTTA 1517759 37 100.0 44 AGATTTTTTA ..................................... TAATGTTGTTGTTCCTGTCCGAATTCCGGTTGTAGGAATGGCCG 1517840 37 100.0 38 GGAATGGCCG ..................................... TTTGTAGCCGGGCAATTGGCCCCTATAACAGTTACCGA 1517915 37 100.0 42 CAGTTACCGA ..................................... CCGTGTTCTAGCAGCGCCTCGACCGCCTCCGGCGCACACAAA 1517994 37 100.0 43 CGCACACAAA ..................................... AATTTTGACGTGCCGGACGGTGACGGTGCCGTGAGCTTGACGG 1518074 37 100.0 38 AGCTTGACGG ..................................... GAGGGGAACTTTCCCTTCCGCCTTTTGCCTCATTTTTC 1518149 37 100.0 41 CTCATTTTTC ..................................... CCTGCTTCATATGATAAGCCCGAATCGGTTCGCGTCGTTTT 1518227 37 100.0 40 GCGTCGTTTT ..................................... AAGTGTAGGAGAGCAACAAGAATGGACATCGGGAAAGAAA 1518304 37 100.0 41 GGGAAAGAAA ..................................... GTATGCAAATATCGGTGACGAAGCAGTACTCGTTCAGTGCT 1518382 37 100.0 38 GTTCAGTGCT ..................................... TATGTCCCGCGGTTAGATGTGTACCGGTGGGTCTATAA 1518457 37 100.0 41 GGGTCTATAA ..................................... GAACGTTAACAATTTTATAGTCCAGAAAGGAGAGAACTATG 1518535 37 100.0 40 GAGAACTATG ..................................... TCGCCGAGAGTGAAGCAGGCATGTCGGGCGCCGTTTGGTA 1518612 37 100.0 38 CCGTTTGGTA ..................................... GCGATCGGGTGCTAACCGACGCGGAGAATTACGTTAAC 1518687 37 100.0 40 TTACGTTAAC ..................................... AGAAGGTCTACCGTCACAATGGCGTTGAGGCTGCAATCAA 1518764 37 100.0 39 CTGCAATCAA ..................................... CGGCCGCGTGAGGTGAGTTTGTAAGACGCGGCAAGTCTT 1518840 37 100.0 36 GGCAAGTCTT ..................................... AGAAAAACCTTCTAGCGGTTGCTCGCCGCAAGGGTT 1518913 37 100.0 41 CGCAAGGGTT ..................................... TTGGGACGTTTCCCGTCCCACACTAAAGCCGTCGAGAAAGT 1518991 37 100.0 45 TCGAGAAAGT ..................................... TCATTGGCCACTTTGGCTCTCTGTACGGCATCGGGAATTTGTGCA 1519073 37 100.0 47 AATTTGTGCA ..................................... TTACAAAGGTAAGTCCGCCCATATCCGTCGTGTCGATGGCGCGTGGG 1519157 37 100.0 40 GGCGCGTGGG ..................................... CGAAGCGGAGCCCGCCGCACCCGCCGGGCCGGATTTACGA 1519234 37 100.0 41 GGATTTACGA ..................................... CGGCTTTAGTGTGGGAAGGGAAACGTCCCAACATCTGCCCG 1519312 37 100.0 39 CATCTGCCCG ..................................... TTCGTTCAGTTTCAAAATCGACCGTGCTGAACGTCAACG 1519388 37 100.0 42 AACGTCAACG ..................................... GGGGGGAAGAGTATGATGTCGTATTACGCGTTTAAAGGCTTG 1519467 37 100.0 38 TAAAGGCTTG ..................................... CTGGGCTAGCGTCCATGTTGGCGGTCAATGCCACGGAA 1519542 37 100.0 42 TGCCACGGAA ..................................... CAGCAATTGCAGAAAGGAGACCAAGATGAACACACAAACTCT 1519621 37 100.0 42 CACAAACTCT ..................................... AACGGTAACTGGGAAAGTCCTCACTTGGACGCAAAATTGTAA 1519700 37 100.0 38 AAAATTGTAA ..................................... GATTAATGCGGTGAAGCTCGCGCGTATGCGCGAGCAAG 1519775 37 100.0 39 CGCGAGCAAG ..................................... GTTCAATGGCGGCGATTACGCGTTCTGGCGCGTGGTCGC 1519851 37 100.0 41 GCGTGGTCGC ..................................... TTCTTCGGTCGATTGAACACGCGCAAGAATATGTCAAACTC 1519929 37 100.0 36 TGTCAAACTC ..................................... TTATTGTGCTTTCTGTGGATGCTTCGGGCACACCGA 1520002 37 100.0 44 GGCACACCGA ..................................... GGCAAGGGTAAAGCTTATCAGCCGAAATTGGACCGCTATGAATG 1520083 37 100.0 41 GCTATGAATG ..................................... TGCTTTACTGCCACACGGGAGCTCTTCCGGTTCGCTCGACA 1520161 37 100.0 TCGCTCGACA ..................................... TATCAAACAA ========== ====== ====== ====== ========== ===================================== 35 37 40 GTCTTAATCCCCTGGCGAGGATTCGCTGTCTTCTGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.30,-8.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [150,197] Score: 0/0.18 # # Final direction: R [0,1.42 Confidence: HIGH] >NC_017079 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1524823 37 100.0 41 CAGGCGCCTT ..................................... CGTTTGGGCTCCCCGCTGCCGGCTGGTCCATTGTACGTCGG 1524901 37 100.0 42 TGTACGTCGG ..................................... AAAGTCGGAGAGCGACAGCTACCTCGTCGCCCTCCTGGGTTG 1524980 37 100.0 42 TCCTGGGTTG ..................................... GTTTCATTGAAAGAAAGGAGCAGAGCATGAAAATCTACACGG 1525059 37 100.0 42 ATCTACACGG ..................................... GGCGGCAGCAACAAAGGTAAGGCCTATCGGCCGAAATTGGAT 1525138 37 100.0 44 GAAATTGGAT ..................................... GATGTTGTTGTCGTGAACGTTAACGATCTGGTTCAAACAGAAAG 1525219 37 100.0 36 AAACAGAAAG ..................................... GTAAGTCCGCCCACATTATCCGTGTAAACGGCGAAT 1525292 37 100.0 36 AACGGCGAAT ..................................... CCCTCCAGCGTCGTCGGTGCGTTCACAACAGCGTTC 1525365 37 100.0 37 AACAGCGTTC ..................................... GCGTCTACCATACCCCGACACATCATGGATATCTAAT 1525439 37 100.0 41 GATATCTAAT ..................................... AAAAACAGAAAGGAGAGAACGATGAGTATCAATAAACTGAC 1525517 37 100.0 41 ATAAACTGAC ..................................... GAACCAAAATTGAATGAGTACTGGTGGACTTACAAAGGTAA 1525595 37 100.0 40 ACAAAGGTAA ..................................... TATTGTTCATTTTGCGGTTGCTTCGGGCATCCGGAATCTG 1525672 37 100.0 41 CCGGAATCTG ..................................... TGCGGGTACCCGGCGTAGTAGGCGGCCAGAATTTGTTTTGC 1525750 37 100.0 44 TTTGTTTTGC ..................................... CTACAATCCACCTTGTTGTTCGACCCGCTGGCCGTTATTGAATT 1525831 37 100.0 39 TTATTGAATT ..................................... AGTACCGGCGTGCTGATGTTTTGGAGGGGAGGGCTTAAT 1525907 37 100.0 42 AGGGCTTAAT ..................................... CAGCTTCAAATGGCTCGGCGCCAAATCGCCAGCACTCATTTG 1525986 37 100.0 44 CACTCATTTG ..................................... GAATTAGACCGCGGTTACGGAATCTTCGCTGCCTCTATAGGTGA 1526067 37 100.0 38 CTATAGGTGA ..................................... TTGTTATCTCTGTTGTTTCTGTTGTTGTTGTTTCAGGA 1526142 37 100.0 40 TGTTTCAGGA ..................................... TCCAATCGATTATTTTTCCACAAAATCAGCACGTATAAAG 1526219 37 100.0 41 ACGTATAAAG ..................................... TTTAAACAGAAAGGAGAGAGCGATGAACGTTGATGTTAAGG 1526297 37 100.0 38 GATGTTAAGG ..................................... ACATATATACACGCGCGCATACGCGCGCGTGAGTATAA 1526372 37 100.0 42 GTGAGTATAA ..................................... CTGTAAGGCGACGTTGCATCGGAAGCATACTGCACTTCGTAG 1526451 37 100.0 40 CACTTCGTAG ..................................... CCCTGCTGCTGGTGCCGCCAGACCGGACCCACTCTTTGGG 1526528 37 100.0 37 ACTCTTTGGG ..................................... ATCGCAATCGTTGCAATGTGTCGCATAGCGTCGTAAT 1526602 37 100.0 39 GCGTCGTAAT ..................................... CCGGTACAGAGCTCTGCTCTGGTCTGATGCGGCCGTAGA 1526678 37 100.0 44 CGGCCGTAGA ..................................... AATCTACACGATCCACAGATACGGGGTTAGCCCGTTCGTGCGGG 1526759 37 100.0 43 TTCGTGCGGG ..................................... AAAGCCGTCCGGCTGGCGATCCAGTTCGGGCGGGAAAGCAAAA 1526839 37 100.0 41 GAAAGCAAAA ..................................... CGGGTTATACCACCCTTCTCCGCCATAAAGGCGGAACTCCA 1526917 37 100.0 CGGAACTCCA ..................................... GGAACAATTC ========== ====== ====== ====== ========== ===================================== 28 37 40 GTCTTAATCCCCTGGCGAGGATTCGCTGTCTTCTGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.30,-8.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [56.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [135,3627] Score: 0.18/0.18 # # Final direction: R [0.27,0.92 Confidence: MEDIUM] >NC_017079 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================================= ====== 1527071 39 100.0 41 GCTGCTGGTG ....................................... ACTTGCGTGGTATGCTGTGGGTGCTTTGACAGGTTGATGTT 1527151 39 97.4 43 GGTTGATGTT ......................................A CTGACCGCCACTGCCCGCACGGCCAGCGGCACCTTGCGCAATT 1527233 39 97.4 37 TTGCGCAATT A...................................... TCGGCCGCCACGGCCTGCCGGCCGCAGCGGCTGCACA 1527309 39 100.0 CGGCTGCACA ....................................... TCAATGGTTG ========== ====== ====== ====== ========== ======================================= 4 39 40 CGTCTTAATCCCCTGGCGAGGATTCGCTGTCTTCTGACC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.30,-8.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [41.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [2383,3233] Score: 0/0.18 # # Final direction: R [0,1.01 Confidence: HIGH] >NC_017079 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1527542 37 100.0 42 TTGATTGAGG ..................................... ACGATGAGGAGGTGTGGGATGCAACCCAAGACCTCCCCTTCT 1527621 37 100.0 39 CTCCCCTTCT ..................................... GCAAAGTGAGCGTGCACGCCTCTGCCGCTGCCGCACTGC 1527697 37 100.0 41 GCCGCACTGC ..................................... TGAAAATACGTATTCGTTATTTTCGTCACGGACAGCATGTT 1527775 37 100.0 41 ACAGCATGTT ..................................... AATCTCATCCCAGGCGCCATTGTGTTGTGCTTTTCCAGCAA 1527853 37 100.0 43 TTTCCAGCAA ..................................... CGATAAATGCCGTCAAGCTCGCGCGTATGCGCGAGCAAGACGC 1527933 37 100.0 41 AGCAAGACGC ..................................... AAATTTTTCTGACGCTACCACATCGCTGCGATGCGCTACTA 1528011 37 100.0 38 TGCGCTACTA ..................................... GTAGCAGCGGTCGTGGAAAGGCCTACCAGCCCTTATTG 1528086 37 100.0 41 GCCCTTATTG ..................................... GCCTTCGCGCGCGCGCGGGAAGTATATATAACAAGCAACTG 1528164 37 100.0 38 CAAGCAACTG ..................................... CGCCTGGAGTTGTACCATAACGATGCACTGTGTAAATT 1528239 37 100.0 37 TGTGTAAATT ..................................... ACGAAACTGCCACGCCGAAAAGCCGGAGGGGTGCTTC 1528313 37 100.0 42 GGGGTGCTTC ..................................... GGACCAGTACCGGCGCTTTGCGCTCGGTACGTTTCTTTTTCC 1528392 37 100.0 41 TTCTTTTTCC ..................................... TGGCAGTCTCCTTTCTTTGAACAGAACAATCAACTCATCGA 1528470 37 100.0 39 AACTCATCGA ..................................... TTGGCGTGCCGAAGCGGCTATGGTCGTCGCGCCTGTGAC 1528546 37 100.0 40 CGCCTGTGAC ..................................... GCAGATATATTAAAGAATGTATAGATTTCGCTGAAGTAAG 1528623 37 100.0 40 CTGAAGTAAG ..................................... CAATATGCCGATAACTGCAGTATTCCGAAATGTTCCTAGT 1528700 37 100.0 41 TGTTCCTAGT ..................................... ATTGTTGCTGCTGCTGGCGCTGGCCAAGGCGATCGAAATAA 1528778 37 100.0 42 ATCGAAATAA ..................................... CTCGCTAGATGAAGCGCGAAGATATGGGCTACAAATTTATCT 1528857 37 100.0 37 AAATTTATCT ..................................... ATTGTTGCTTGCGCCGGGTACGAATATTGTGCGTTTG 1528931 37 100.0 38 TGTGCGTTTG ..................................... ACAATGCTGCCTGTTTGGCGATCTCCTCGACATTTGTT 1529006 37 100.0 43 GACATTTGTT ..................................... TACCTGGGTCACGTGATGACCTACCTAGGTCACGTGATGACCT 1529086 37 100.0 39 GTGATGACCT ..................................... TACATGTGGCAGCCTGGGCTGCAGGCCGGGCAGCCGGAC 1529162 37 100.0 39 GCAGCCGGAC ..................................... TTATATTGTCTGTATCGCTAGAGCATCATTGTTTATTCC 1529238 37 100.0 34 TGTTTATTCC ..................................... ACTTTTCAAGTTAACGGCTGCGGCAATCCATGAA 1529309 37 100.0 40 AATCCATGAA ..................................... GGCGTTGCGGTAAGCGTGCAGAGTACGGCGCCGGGACTCG 1529386 37 100.0 37 CCGGGACTCG ..................................... GACGATCACGATCTCCAGCGTGAAGGATCCGTACAAT 1529460 37 100.0 44 TCCGTACAAT ..................................... AGTACGATGACCAACCGCTGGGTGTGTATTCATCGCATACCAAA 1529541 37 100.0 42 GCATACCAAA ..................................... TCGATGACACGCGACGTGCTCGTCGGCACAAACGACAGTATC 1529620 37 100.0 43 CGACAGTATC ..................................... TGTCAATGCCTTAATCTGGTCTTGCAGCTTGCTATTCTGCTTG 1529700 37 100.0 39 ATTCTGCTTG ..................................... GATGATGGTGAAGGGTGCTGCTGCAAGTCTTACTGCGGA 1529776 37 100.0 38 TTACTGCGGA ..................................... CTGCGATGCCGACGGGCGATTCCACTACCACAATATCA 1529851 37 100.0 42 CACAATATCA ..................................... CCTGTAACTATAGCCTCCGGTGTACTTTTCCGTTGCAGAAAT 1529930 37 100.0 39 TTGCAGAAAT ..................................... GGTGGTTGGAGGAACGGCGACAATAAGGTCAAGCTGGTC 1530006 37 100.0 40 CAAGCTGGTC ..................................... ACATTTCGTAATGCGATCACATACCCCAAAAGGGCAGGGA 1530083 37 100.0 42 AGGGCAGGGA ..................................... ACACTATCTGCGCCACAGCAAAGGCCGCTGGGCCGGCAAGCG 1530162 37 100.0 41 CCGGCAAGCG ..................................... ATCGACGGGTATTGCTAAAGCATACGGTGGCGGGTAATTTG 1530240 37 100.0 GGGTAATTTG ..................................... CCCTCATGCT ========== ====== ====== ====== ========== ===================================== 36 37 40 GTCTTAATCCCCTGGCGAGGATTCGCTGTCTTCTGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.30,-8.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [48.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2854,304] Score: 0.18/0.18 # # Final direction: R [0.45,0.74 Confidence: LOW] >NC_017079 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1976690 37 100.0 35 NNNNNNNNNN ..................................... GGCGGTGCTGTGGCGGATGCTGCGGATGGGCTGGG 1976762 37 100.0 36 NNNNNNNNNN ..................................... GCCGACCTGGCGCTCGTGGTCGAATACGGCGGGGAC 1976835 37 100.0 39 NNNNNNNNNN ..................................... GGCATCGAAGTTTCGCAGCGGCGGCGGGTACGAAACGGT 1976911 37 100.0 35 NNNNNNNNNN ..................................... TTCCGTCCACGCCCGATACGCCAGCGGGCCTAGCG 1976983 37 100.0 35 NNNNNNNNNN ..................................... CGATCGCTTTCAAGCCGAGCGCGATCTCGATTTTC 1977055 37 100.0 37 NNNNNNNNNN ..................................... GGCTCGCCGCAGCGATGCGGCGAATGGGCAATTTAAA 1977129 37 100.0 37 NNNNNNNNNN ..................................... GGTCTTTTGCTGCAACGGCGACGAGGCCGGAGACGAT 1977203 37 100.0 36 NNNNNNNNNN ..................................... ACCTGTACGACGCCAACTTGCGCAAAGCCAACCTGC 1977276 37 100.0 38 NNNNNNNNNN ..................................... CTTTGGCGGGGGAGTACGTGACACGCACGATATAACGC 1977351 37 100.0 37 NNNNNNNNNN ..................................... TATCGCCGCTCTGGCCGATACGCTTCAACTTTGTCGA 1977425 37 100.0 36 NNNNNNNNNN ..................................... GCCGATCTGGGGCGGCAAGCCTCCGGGGGGCGCATC 1977498 37 100.0 38 NNNNNNNNNN ..................................... CGTTAACATTAGCTCCGCTATGCGTTTCGCAATCTCTG 1977573 37 100.0 35 NNNNNNNNNN ..................................... ACCTGACCGGCGCCGACCTGTACGACGCCAACTTG 1977645 37 100.0 37 NNNNNNNNNN ..................................... CGATGCGCATCACGCCGCTCTTGTCGCCTTGCGTGAC 1977719 37 100.0 36 NNNNNNNNNN ..................................... TTTTACCGAACTGACAACGCTTATGTTTTGTTCTCA 1977792 37 100.0 36 NNNNNNNNNN ..................................... GGCATACGGCAACGCCTGGGAAGAAAAGCGACGAGA 1977865 37 100.0 37 NNNNNNNNNN ..................................... CATCGAAGACGGCGACGAGGCGACGGCGCGCTGGTGG 1977939 37 100.0 36 NNNNNNNNNN ..................................... ACTTGAGCCATCCGCCGGACAAGCGGATCGGGAAGT 1978012 37 100.0 36 NNNNNNNNNN ..................................... CTCTGCCAGCGGGCGCAACGACGGCTTCGTGATGCT 1978085 37 100.0 38 NNNNNNNNNN ..................................... CTCTTCGTGCTACAATTGATGTGGGTTCGGAGAGGCTG 1978160 37 100.0 38 NNNNNNNNNN ..................................... CGCTGACGCCGTGGCTCCGCTGATCGCCCTGCTCGGCG 1978235 37 100.0 35 NNNNNNNNNN ..................................... CGCTCGTGTTGACCTTCGCAGCGTTGGCGGGCGGT 1978307 37 100.0 37 NNNNNNNNNN ..................................... ACGCTATGCGGTGGATCGTATTGTGGTGAGCGGCGGC 1978381 37 100.0 36 NNNNNNNNNN ..................................... TCTTCGATGCGGCGGATCAGGACGCTCTCGGCCAAG 1978454 37 100.0 37 NNNNNNNNNN ..................................... CTACGTCGCCGTCGGCAAGGGAACGCATTAGCATCTC 1978528 37 100.0 36 NNNNNNNNNN ..................................... TTTCGTTTGCTCGCTGGCTCTCGCCTGGCTTGAGCT 1978601 37 100.0 35 NNNNNNNNNN ..................................... GATAGAACAAGCTAAGCGCGCCGATTTGCTGGTGC 1978673 37 100.0 39 NNNNNNNNNN ..................................... CGGCCGTCGCCAACGAGCGTGTACGGCTGTAGAAAAAGC 1978749 37 100.0 36 NNNNNNNNNN ..................................... TGGTATGCGGGCGGCAAGCTGGTGGCGGTGCGCTAC 1978822 37 100.0 35 NNNNNNNNNN ..................................... GGCTCGACGATGAGGCGCAGCGGGCGGGGCTGAGC 1978894 37 100.0 36 NNNNNNNNNN ..................................... CTTCAGACGACGAGAACGTGGTTGAGTCGTTTAAGC 1978967 37 100.0 36 NNNNNNNNNN ..................................... ATGCCACCCCGGGCCAGGGGATGGCACAGCATTTGT 1979040 37 100.0 35 NNNNNNNNNN ..................................... TCCGTGACGAGGAAGCGCATTTTGATGCGCACCTC 1979112 37 100.0 35 NNNNNNNNNN ..................................... ACAAAGTCGCCGGACTGAAACACTGCCATGTTCGG 1979184 37 100.0 37 NNNNNNNNNN ..................................... TCACTCTCATTGCCAAATCCGTTCGCTGCGCTGAGCG 1979258 37 100.0 35 NNNNNNNNNN ..................................... TCGCTGCTCAGAACGTGCAGCATCCAGGCGCCGGC 1979330 37 100.0 35 NNNNNNNNNN ..................................... GGGGCTGCCGCGGACGCTCTCACGCAAGGACACCT 1979402 37 100.0 38 NNNNNNNNNN ..................................... AATCCAGGTCCTGCCCGCATTCGCAGCAGACGTCCGCT 1979477 37 100.0 36 NNNNNNNNNN ..................................... ACACCCAGCAGGCCGTGAAAGCCGGAGGAACGGCAA 1979550 37 100.0 36 NNNNNNNNNN ..................................... CCTCCACGCCCTCACTGGCGCCGACGGGATATTCAA 1979623 37 100.0 36 NNNNNNNNNN ..................................... GATGTAGAGCCGCTGCGCCAGGCTCGGCCAGACGTA 1979696 37 100.0 37 NNNNNNNNNN ..................................... TGGGCAACAGGTCAGCGACATTGACGGGCGGGTCGTC 1979770 37 100.0 36 NNNNNNNNNN ..................................... ATTATCGTGCCGTGGAGTCGCAGGGGGTACAAACTC 1979843 37 100.0 36 NNNNNNNNNN ..................................... GTCTCGGCGCGCTGCAGACGACCTGGAACACGAACG 1979916 37 100.0 36 NNNNNNNNNN ..................................... GGAACGGCCCGGGCGGGATCCTTGAGCTCGTCGAGG 1979989 37 100.0 36 NNNNNNNNNN ..................................... TTCGATCATTTGTTCAAAGTTCTTGATATTCGCCGT 1980062 37 100.0 38 NNNNNNNNNN ..................................... GATTGAGCGCCCGACTGTGCGCCCGACTGGTCGCCGGA 1980137 37 100.0 37 NNNNNNNNNN ..................................... AGTGGACGGATACGACCTACACGACGGGCGGCGTCAT 1980211 37 100.0 37 NNNNNNNNNN ..................................... CGACGCTCCAGCTTGTATTACGAACGCTCAACTCTGC 1980285 37 100.0 34 NNNNNNNNNN ..................................... GCCGGCTCGGTTTCGACATGGACGGGAAAGTTAC 1980356 37 100.0 35 NNNNNNNNNN ..................................... CCCAAAGCCTCCAGCGTCACGCTGCGCAGGATGGT 1980428 37 100.0 35 NNNNNNNNNN ..................................... TTCCCGTGGTTTGGTGGAAAATCTAAAGTCGCCGA 1980500 37 100.0 36 NNNNNNNNNN ..................................... TTTATACCTCCCGGACTATTATACAGCACAGATTGC 1980573 37 100.0 35 NNNNNNNNNN ..................................... AACGCCGAACCGGTCAGCGTCAGCGAACACTCTGT 1980645 37 100.0 35 NNNNNNNNNN ..................................... CTGTACGCGACGCCGCCGACGCCTGCGAGAGATAG 1980717 37 100.0 37 NNNNNNNNNN ..................................... GATCCTTTGCGCTCTCGTCTGCGCCGACCGCCGTAAC 1980791 37 100.0 36 NNNNNNNNNN ..................................... CCGTAGCCTGCGATCTCGCCCTCGTAGTCCCGATTG 1980864 37 100.0 36 NNNNNNNNNN ..................................... GCAGCTTGCTGCGTTTCAAGTCTTCGAGCGCTTGTT 1980937 37 100.0 36 NNNNNNNNNN ..................................... GCCAAGCTCGGGGAATTCGCCGGCCGGGTCGGACAC 1981010 37 100.0 36 NNNNNNNNNN ..................................... TCCAGCGACAATCCATCGCCAAATATCCGTGCGGCG 1981083 37 100.0 36 NNNNNNNNNN ..................................... CATCTTGATGAAAGAAGCAACATGAAAACGCTTGCA 1981156 37 100.0 37 NNNNNNNNNN ..................................... CTGGATTGATCGACATTGCCGTGCTCCAGTAGATGCA 1981230 37 100.0 36 NNNNNNNNNN ..................................... GCCGGCCCCACCCCCACCGCCGAATGTCGGCAGTAG 1981303 37 100.0 35 NNNNNNNNNN ..................................... ACGTGTTTCGGCTGGTTGCGAATGGCGACGGCGGC 1981375 37 100.0 35 NNNNNNNNNN ..................................... ACCGTTCCGGTGGCAGAATCGAGATAGAGTTTCGT 1981447 37 100.0 35 NNNNNNNNNN ..................................... GGAAAATTCGGGAAAGCCGTGCAGGTGGCCGAAGC 1981519 37 100.0 35 NNNNNNNNNN ..................................... GACCGAGCGCGAACGATGGCGACAATGGGCAAGAG 1981591 37 100.0 36 NNNNNNNNNN ..................................... ACTGCGTAATCGGCGTGCTGCGGCTGTTGCCGTGCG 1981664 37 100.0 36 NNNNNNNNNN ..................................... AAGTTTAACCCTCGCTGGGCAAAGATCGCCTGGTGC 1981737 37 100.0 35 NNNNNNNNNN ..................................... GCGAGATCGTTTTGATAGTGCGACCGTCGAAAATT 1981809 37 100.0 37 NNNNNNNNNN ..................................... GCATTCGTGGAATCCAGCGTGTTTCACTGGCGCAGTC 1981883 37 100.0 35 NNNNNNNNNN ..................................... GGATAACGCTCTGGCGTTCCGGTACCAGGACCAAG 1981955 37 100.0 37 NNNNNNNNNN ..................................... GATTGTGGTGGCTGCCGCCACCGCTCCAGGCGTAGCC 1982029 37 100.0 36 NNNNNNNNNN ..................................... ACCCTGTAGGGTGAGACGTTGAGGGGGGTGCGTGCG 1982102 37 100.0 35 NNNNNNNNNN ..................................... AGCTCATAGTGCAGTTCCAGCCCAATCAGCCTGCT 1982174 37 100.0 37 NNNNNNNNNN ..................................... AACGCAGCGGCAGTTCGTACCGCCGCACCGGTACGCT 1982248 37 100.0 36 NNNNNNNNNN ..................................... CTATCCTCATCTGATCCCGGCGCAACCGCGGCAAGT 1982321 37 100.0 36 NNNNNNNNNN ..................................... GATTATTATCATGCGTGAAATGCACTGGAGTTGGTG 1982394 37 100.0 36 NNNNNNNNNN ..................................... TGTGAGCGCTATGCCCCAAAGCGTCCCTTCGGGATT 1982467 37 100.0 36 NNNNNNNNNN ..................................... CGTACAGTAGGTTTCCGGCTGATTGACTTTTGTATA 1982540 37 100.0 37 NNNNNNNNNN ..................................... GATTGATGAATCTGGCGTCGATTGCCGCCTCGACGTT 1982614 37 100.0 35 NNNNNNNNNN ..................................... CGAACAGGAACGACTCTGCCCGGGGGCGGACTTGC 1982686 37 100.0 35 NNNNNNNNNN ..................................... TGAATTTGCCACGACCCTTCGCCGGTGCACCAGCC 1982758 37 100.0 37 NNNNNNNNNN ..................................... ACGCAACCGGCATCTACGGCGCTGTGCCAGCTGATGT 1982832 37 100.0 36 NNNNNNNNNN ..................................... TTGCCGAACAGCGTGATCTGACCCGACTCGCCGTTC 1982905 37 100.0 37 NNNNNNNNNN ..................................... GTCTGCAACAATCAACGTGATTAAGCGACTGATCGAC 1982979 37 100.0 36 NNNNNNNNNN ..................................... GGCTTTTGTCTTTCACAAACAAGCCGCTGGCCGCTG 1983052 37 100.0 36 NNNNNNNNNN ..................................... CTTCAGACGACGAGAACGTGGTTGAGTCGTTTAAGC 1983125 37 100.0 37 NNNNNNNNNN ..................................... CGATCCGCACGATTGCTGATGTCGTGAGGGAGGTAGT 1983199 37 100.0 36 NNNNNNNNNN ..................................... GTGAAGCAGCGGCAGCAATCGAGATGCTAGCTCGCA 1983272 37 100.0 36 NNNNNNNNNN ..................................... CTGCGCTGCGCACGGCCGTGGCGCATTTGGAAGAGC 1983345 37 100.0 37 NNNNNNNNNN ..................................... TCGCCGTCGCCCCGCTGGTCGTCGCCGCCCTGGCCAG 1983419 37 100.0 36 NNNNNNNNNN ..................................... TCATGCAGGCCGCATTCACTGGCAGGCGGTTCGGCG 1983492 37 100.0 36 NNNNNNNNNN ..................................... CGAAGCGCTGGCAGACGTTGCGGCTGAGCAATCAGC 1983565 37 100.0 35 NNNNNNNNNN ..................................... TCCGCCGGACAAGTGGATCGGAAAGCGAAAGGATG 1983637 37 100.0 35 NNNNNNNNNN ..................................... GCACGCTGACCGGCAGCGTCATCAGCGTGCTTTTG 1983709 37 100.0 35 NNNNNNNNNN ..................................... CCTTTTCCCCGCCGAGGAGCTTTTGACCCTGCAGC 1983781 37 100.0 37 NNNNNNNNNN ..................................... CTTAGCGGGGTAGTACGTGACACGCACGATATAACGC 1983855 37 100.0 35 NNNNNNNNNN ..................................... GACTTCTCGCCGCCAGCGTACGCTGCCGGTGGAGA 1983927 37 100.0 37 NNNNNNNNNN ..................................... GAATTTCCGCTTTCAGCAAGCGCTCTTTCGCTCGACG 1984001 37 100.0 37 NNNNNNNNNN ..................................... AAGGCACTAAACAAAAAGGAGAAAAAACGGCGGCAAG 1984075 37 100.0 35 NNNNNNNNNN ..................................... TTTCCTCGGTCTCGACAAGGCGGCAAGGGGATTAG 1984147 37 100.0 36 NNNNNNNNNN ..................................... TCAGGGCTCATAGCGCGCGTCCGAACGGCGCGGGAG 1984220 37 100.0 35 NNNNNNNNNN ..................................... GGCAACGCATTGATTTAATCGTGAAGCGGCGCAAT 1984292 37 100.0 36 NNNNNNNNNN ..................................... CCGTTTTCCGCTGAGCTGAGCGAGCGGAAAAACGGA 1984365 37 100.0 36 NNNNNNNNNN ..................................... ACCACGCCAGCGCTAGTGCGATGACCATATCGTCGT 1984438 37 100.0 35 NNNNNNNNNN ..................................... TGAGCGGCGGTGGCGACGTTGTTACGATTTTCTCG 1984510 37 100.0 36 NNNNNNNNNN ..................................... GTTTTCATTCAGCTGTTTTAGCCAGTCCTCGCGCAA 1984583 37 100.0 36 NNNNNNNNNN ..................................... CTCCGACGCCGACCTGAGCGGCGCCAACCTCGTCGA 1984656 37 100.0 36 NNNNNNNNNN ..................................... CCAAAATCAGTAGCCAGATGAGAAAAACCACGCCAT 1984729 37 100.0 35 NNNNNNNNNN ..................................... AAACACTGCGCCGACTACAAAAAATCCAACTAGCC 1984801 37 100.0 35 NNNNNNNNNN ..................................... GACAGACGGAAGATGATTGCGTGGACGGAAAGGAC 1984873 37 100.0 36 NNNNNNNNNN ..................................... GCCGCCGGAGTCGACTAACGCCGACGGCGCAAAAGG 1984946 37 100.0 35 NNNNNNNNNN ..................................... ATCGTCGTCTCTACTGCATCAAGCTGCGCATTGCG 1985018 37 100.0 35 NNNNNNNNNN ..................................... AAAGGAGGCACAAAAGTTTTTAACATTCGCCACTG 1985090 37 100.0 36 NNNNNNNNNN ..................................... AGATGGTAGCGCCGACCAAGGAAAACGGCCTGCCGC 1985163 37 100.0 36 NNNNNNNNNN ..................................... ACCTTGGACGGAACGGGCAATGGGTGGACTTCCGCC 1985236 37 100.0 37 NNNNNNNNNN ..................................... TCTCGCCTCGGATGCTCGGCGAGGGCAGGCAGACGGA 1985310 37 100.0 35 NNNNNNNNNN ..................................... GTGGCGTAATGAATCCGATACGCCATCAGCTCCGA 1985382 37 100.0 36 NNNNNNNNNN ..................................... CCGCTGTGACTGGCAGCATGCCTGCGCCGTTCCGGC 1985455 37 100.0 37 NNNNNNNNNN ..................................... AATCGTGCTCAGCTCTTCCCTGCCTGGCGCACATTGC 1985529 37 100.0 37 NNNNNNNNNN ..................................... CGGTTTTGCCTGTGCGATGTTTTGGCGCTTAGCGCAA 1985603 37 100.0 36 NNNNNNNNNN ..................................... CGACAATCTGCGTTTTGCTGGCGGCCGTCGTGTTGA 1985676 37 100.0 35 NNNNNNNNNN ..................................... GTCTCTGAGCCAGGCGGAAGCGGAACCGCCCCCAC 1985748 37 100.0 35 NNNNNNNNNN ..................................... TGCTGCCTACACGCCGTTGCTTGAGGCGATGCTGC 1985820 37 100.0 36 NNNNNNNNNN ..................................... TTGCGCAGCGAGGCCAGCAGCCCCATCCCCTGTGCG 1985893 37 100.0 36 NNNNNNNNNN ..................................... AGCCCGTGGCAAGAGTTAGATTTGTCCACGCCGAAC 1985966 37 100.0 35 NNNNNNNNNN ..................................... CGGTCGTTTACGTTGGCGACTGGGAGGAGGCAGCA 1986038 37 100.0 36 NNNNNNNNNN ..................................... CGCTTCAGCGGGTGGTAGTTCACTGAGTCCTCGCGT 1986111 37 100.0 36 NNNNNNNNNN ..................................... TCCCCGCCCTCCGAACGACGAACGGCGTCGAGTGCG 1986184 37 100.0 37 NNNNNNNNNN ..................................... GCGAAAGTACAAGGGAGGCGGACGACCTCGACTCTCG 1986258 37 100.0 36 NNNNNNNNNN ..................................... TCCGTTCAACGGCAGGATTGACGAGTTTGTTATTCT 1986331 37 100.0 36 NNNNNNNNNN ..................................... TTTGAGCTCGTCGCCGCCCGCTCGGACGCCAGCACG 1986404 37 100.0 35 NNNNNNNNNN ..................................... GCGAATTATTTTGCGGTCTTCAAGAGTTACGGCGA 1986476 37 100.0 35 NNNNNNNNNN ..................................... ATTCATACATGTATCGAGGTTCATGTAGGAGGTGA 1986548 37 100.0 37 NNNNNNNNNN ..................................... GCCACAGCCTAGGCTTGCCCGGCCAGTTCGTGTAAAT 1986622 37 100.0 37 NNNNNNNNNN ..................................... TGTCGTAATTCTTGATCCGAAGGGCGGCGCCGACTGG 1986696 37 100.0 33 NNNNNNNNNN ..................................... CTCATATTTTGCGACGAGGTCGGTGATAGTTTG 1986766 37 100.0 36 NNNNNNNNNN ..................................... TGCAAATTGTTCACATCCACTTATTTGGCCGCTTCC 1986839 37 100.0 36 NNNNNNNNNN ..................................... CCGACGGCGCACTGCCGCCGACGCCGGAAATCTTCT 1986912 37 100.0 36 NNNNNNNNNN ..................................... CACTTAGAACATGTGTTCGGGAGGCCTCGAGTCGTC 1986985 37 100.0 35 NNNNNNNNNN ..................................... GGTTCCTCAGCACGCCGAAAGGGCGCAACTATTTC 1987057 37 100.0 36 NNNNNNNNNN ..................................... TACAGCCACCTCCCCCGCGCCAGCGCAAGCGTTGAG 1987130 37 100.0 35 NNNNNNNNNN ..................................... TGGATTTTCTGGATCATTTCCTCCCCCCGTGCAAG 1987202 37 100.0 35 NNNNNNNNNN ..................................... CCGCTCTGGCCGACTCGCTCGGCCAGTTCCTCGAC 1987274 37 100.0 34 NNNNNNNNNN ..................................... CCGCCTGCTGCATGCGCTGACGGAAACGCCCTTC 1987345 37 100.0 36 NNNNNNNNNN ..................................... GTTCGGCGTTCGTGATCATGCGTCCACCCGCACGGC 1987418 37 100.0 35 NNNNNNNNNN ..................................... CGTCGTAGCCGAGCTCGGCCCAAATCTGCCGCTTC 1987490 37 100.0 37 NNNNNNNNNN ..................................... ACGCCCGTGCGGGGCAAAATGACAGGCCACACGCTGC 1987564 37 100.0 37 NNNNNNNNNN ..................................... CCGTATCATGTAAAAATTTCGGCAGCTCCAGCGCAAA 1987638 37 100.0 37 NNNNNNNNNN ..................................... CGCAGAGTCGATCAAAGACGTACGCAGGCGATCGGTG 1987712 37 100.0 36 NNNNNNNNNN ..................................... AACCATCCCAATAGCCGCTGTACAACGGTGTGAGGT 1987785 37 100.0 37 NNNNNNNNNN ..................................... GCCGGCGGGCAAGCGCCAGGAGGTGCGATGTTCTGGT 1987859 37 100.0 35 NNNNNNNNNN ..................................... GTGATTTCGGAAGAGCAGACCGTTGTCGAGTCGTT 1987931 37 100.0 37 NNNNNNNNNN ..................................... CGCTTCAAGGCCGACGGCGTTGAGGTCGACGGCAGCG 1988005 37 100.0 36 NNNNNNNNNN ..................................... GGGAGAATCTCAGCGTTCACCTTTGTCCCGCCACGC 1988078 37 100.0 37 NNNNNNNNNN ..................................... GTGGAGGCGGCAAGGAGAGAGGGGAATGCGATACGGT 1988152 37 100.0 37 NNNNNNNNNN ..................................... CAATCAAAGATGCGCTTACCCCGCAGCAACGCATCCT 1988226 37 100.0 35 NNNNNNNNNN ..................................... GCTATGTGCGCAACCTGGAGCGGCGCATCGAATTC 1988298 37 100.0 36 NNNNNNNNNN ..................................... CTGCCTGATCGTCACCGGATTGGCAGATTCGTTGGT 1988371 37 100.0 35 NNNNNNNNNN ..................................... GGCTCTTCCATCACGTTCTCCTTTCGATCATTGCT 1988443 37 100.0 34 NNNNNNNNNN ..................................... CGGCAATCCCATATCGCGGCAAGCTGGGAATTTA 1988514 37 100.0 35 NNNNNNNNNN ..................................... TGCTACTATTCGTCGTGCAACGTCGCAACGTGGAG 1988586 37 100.0 36 NNNNNNNNNN ..................................... TGCACCACAAGGCGAAACACGTCGGCGGCATGCGGT 1988659 37 100.0 35 NNNNNNNNNN ..................................... CGCAGTACGATGACAGTTACGCGATTCTGACGGGC 1988731 37 100.0 35 NNNNNNNNNN ..................................... TGCGTTGGCAATGCGTCAAGAGCCAGAGGCATCGT 1988803 37 100.0 35 NNNNNNNNNN ..................................... CCGAACATGCGCACCCAATCGTGACGCATCAGTGT 1988875 37 100.0 35 NNNNNNNNNN ..................................... CCGCATGCACTGGCTACTCCGCCGTTGAGTCGCAT 1988947 37 100.0 36 NNNNNNNNNN ..................................... AACATTTCCTTTCCCACTATGCGGCGTTTTTGTGCC 1989020 37 100.0 35 NNNNNNNNNN ..................................... TTGCACCTTGGTTTGGCCCCAAACGGAAAACAACC 1989092 37 100.0 35 NNNNNNNNNN ..................................... GTCTCTGTGCCAGCCTGTGCAGCCAGGATGCAGGC 1989164 37 100.0 35 NNNNNNNNNN ..................................... TCTCTATGTGGCGCAGACGCAGTACAACCAGGCTG 1989236 37 100.0 35 NNNNNNNNNN ..................................... TTGAAATACTCGATTGCGCCCTTGAACCCGTCCAT 1989308 37 100.0 35 NNNNNNNNNN ..................................... GCCAAGATCAAAGTCTTGGCGATGGGGCGGCGGTG 1989380 37 100.0 37 NNNNNNNNNN ..................................... ATTTTGCAGTGGCGCAGGCGGATCGGCTGAATTTCTA 1989454 37 100.0 36 NNNNNNNNNN ..................................... CCGAGCAGCGCCGCATTTTTCGCCGACGGTGGCAGA 1989527 37 100.0 37 NNNNNNNNNN ..................................... TTGTCAGCAAGACCCGCTGCCCGGCGTTGACCGGCAA 1989601 37 100.0 35 NNNNNNNNNN ..................................... GGCCTCCCGCCGGTGTGCGGAGGGCGCCGGTGACC 1989673 37 100.0 37 NNNNNNNNNN ..................................... CCTGATGTCCCACCATTCGTAGCCCATTGGTTGCAGA 1989747 37 100.0 36 NNNNNNNNNN ..................................... CCAACACCTGCATCACAACATCCGTCATCGGACTGA 1989820 37 100.0 35 NNNNNNNNNN ..................................... AATGACATGGTAGGCAGCATCAATGTCACGGTCAA 1989892 37 100.0 35 NNNNNNNNNN ..................................... TTTTCATATCGGGCAAGTCCCGCTGCGATCCCTGC 1989964 37 100.0 35 NNNNNNNNNN ..................................... ATCCTTCGACCACCATCACATTGTCGAACTCGATC 1990036 37 100.0 35 NNNNNNNNNN ..................................... TAGTAGTCGCTGAACGAAAGCATCTGCGGATAGCC 1990108 37 100.0 37 NNNNNNNNNN ..................................... ATTTTGTTCGCCGCAAGCTCTACTTTGTAGCGAATCA 1990182 37 100.0 35 NNNNNNNNNN ..................................... ACGAAACAACAATAAAACTGACGCCATCCCGTAGC 1990254 37 100.0 35 NNNNNNNNNN ..................................... AGGATATGTATTGGTCTCTGCGCCGGGCACTCAGC 1990326 37 100.0 37 NNNNNNNNNN ..................................... GTCTTTTTGTTCCGGATCCTGACCCCACTGCCAGAGT 1990400 37 100.0 36 NNNNNNNNNN ..................................... TTTGTGCGGCGTTCCAGGGGTCGATGGCGACACTGC 1990473 37 100.0 37 NNNNNNNNNN ..................................... AGACATCACCACCGCCGGCGAACAGCTCCGCGTTGTG 1990547 37 100.0 35 NNNNNNNNNN ..................................... GGATTACCCGCCGGGCACGGGTGACCGAACCTTAT 1990619 37 100.0 35 NNNNNNNNNN ..................................... CTAAATGCATCGAAATACCTCCATCAGCAACAAAG 1990691 37 100.0 35 NNNNNNNNNN ..................................... TTATGGGACGTTCAGCAAAGGTGTGCTTGAATGCA 1990763 37 100.0 35 NNNNNNNNNN ..................................... TCTTTGTCTTTCGTCGCTGTGCCATTGTTCGATTC 1990835 37 100.0 37 NNNNNNNNNN ..................................... GGCATACTGTATGACACCGTATCACCGTTCTACGTGT 1990909 37 100.0 36 NNNNNNNNNN ..................................... CCCAGGTGATCCAGGCAGTGGATTCGTCTACAAACT 1990982 37 100.0 36 NNNNNNNNNN ..................................... CTGCTACACCCCTTAATCGCCTGTCAGGCGGGGTGC 1991055 37 100.0 36 NNNNNNNNNN ..................................... CGACTTCCCACACGAAGTAAGACGCTAGCCGCCGCG 1991128 37 100.0 35 NNNNNNNNNN ..................................... CCGTAGCCTGCGATCTCGCCCTCATAGTCCCGATT 1991200 37 100.0 36 NNNNNNNNNN ..................................... ACGTTGAAGCGCAGATAGCCGACTTTTTGGCCGAAG 1991273 37 100.0 36 NNNNNNNNNN ..................................... CTGCAAGCGCGTCTATGGCGGCAAAGATGGCAAAGC 1991346 37 100.0 35 NNNNNNNNNN ..................................... GCCTCTGGCGGCAAGCTCTACAAGCTCTTTGCGTA 1991418 37 100.0 36 NNNNNNNNNN ..................................... GGCGCTATTCTGATCGAAGTTCCATTGCCGGCAGAG 1991491 37 100.0 36 NNNNNNNNNN ..................................... GGTGAATGCGCGTTTGTGCCAGTGAACAAAAGTGAG 1991564 37 100.0 35 NNNNNNNNNN ..................................... CATTCACGGCTGCGCTCTCGGCGCTTGCGGCCGGC 1991636 37 100.0 36 NNNNNNNNNN ..................................... GAAAATTTTCGTCGGCGGTGGCGTAGGGGAGGTAGC 1991709 37 100.0 35 NNNNNNNNNN ..................................... CGATGGCTTCTGTCTGCGCTATGTGGCATAATCAC 1991781 37 100.0 36 NNNNNNNNNN ..................................... CGACGTTGGTCGGCGATGATGCGAATGTGCGGCGTT 1991854 37 100.0 38 NNNNNNNNNN ..................................... TTGGATATGGCGCGGGCGAACATCATGTTCCTCCCGAA 1991929 37 100.0 35 NNNNNNNNNN ..................................... TCCAAATCTTCGCCGCCGCCTTCGGCGCCGAACTT 1992001 37 100.0 37 NNNNNNNNNN ..................................... GACTGTCGGACAAAACTCCTACATGCAGTCCACCGCT 1992075 37 100.0 38 NNNNNNNNNN ..................................... GCATACAGTCCGTACTCATTCGCCACGCCGAAAATTCC 1992150 37 100.0 35 NNNNNNNNNN ..................................... TGCTCTCCTATCTGATAGCGGGAGGCATGAGATGA 1992222 37 100.0 35 NNNNNNNNNN ..................................... AACAGATATGCCATATCGCCCAGAGGGATATTGAG 1992294 37 100.0 36 NNNNNNNNNN ..................................... CACGATCAAAAGAAAGTGGGGGGGTAGCATGACGCT 1992367 37 100.0 36 NNNNNNNNNN ..................................... TGATGATCGGCACGCCGCGCCCGGAGAACTGATTGA 1992440 37 100.0 36 NNNNNNNNNN ..................................... TGAGGTCCAGGACGCCCCACATGCCGATGATGAGGT 1992513 37 100.0 35 NNNNNNNNNN ..................................... GGCAGATATTGATAGCCATCGCCAGCCATTTCATG 1992585 37 100.0 35 NNNNNNNNNN ..................................... ATGCAAACGCCTGAGAGGAAAGCGATTAGGCACGT 1992657 37 100.0 37 NNNNNNNNNN ..................................... GCTTCTCCATATCGAGTACGCGCCAACGCCTTCCTTC 1992731 37 100.0 35 NNNNNNNNNN ..................................... CGGCCTCCCGCCGGTGTGCGGAGGGCGCCGGTGGC 1992803 37 100.0 36 NNNNNNNNNN ..................................... AGATAGATCAATCATATTGCTATCCTGTGGTCTCCA 1992876 37 100.0 36 NNNNNNNNNN ..................................... CACGTCAGCAAACGGAACGGGCGTCGCCAGCGCTCG 1992949 37 100.0 36 NNNNNNNNNN ..................................... AATTTCTGCCTCCGCTGCTCCTAAATGCACGACCAA 1993022 37 100.0 35 NNNNNNNNNN ..................................... ACTTTATACTTGCCGTCCGGCTGCAACAGCCGGCC 1993094 37 100.0 36 NNNNNNNNNN ..................................... TTTCCGCATCAATATCATCGCTGCCTGGTGTAGAGC 1993167 37 100.0 35 NNNNNNNNNN ..................................... TTGAAATACTCGATTGCGCCCTTGAACCCGTCCAT 1993239 37 100.0 35 NNNNNNNNNN ..................................... TTCTGCTGTACGCGACGGACGAGCGTTCCAGGGCA 1993311 37 100.0 37 NNNNNNNNNN ..................................... CCTCAAATTCTGAGTAATCTACGTCTTCCGTGTCTTG 1993385 37 100.0 36 NNNNNNNNNN ..................................... CTGCATCTGGCGGCCAGCGCCGCCGAGGTGGTGGCC 1993458 37 100.0 37 NNNNNNNNNN ..................................... GCGGCGTTGCGCTCGACGATGAGCGCCGAGGGACGAA 1993532 37 100.0 36 NNNNNNNNNN ..................................... TGCCGTCAGCGCCGACGACGACAAACGACGTGTGTG 1993605 37 100.0 36 NNNNNNNNNN ..................................... TAGGTTCCCGCTCAGATAATATCTGCGGTTTGCGCC 1993678 37 100.0 34 NNNNNNNNNN ..................................... AGGTGGAGCGGGGGCGCAGGGGGAGCTGCCAGGC 1993749 37 100.0 37 NNNNNNNNNN ..................................... ACGCCAACAGCATCGGCGTCGAGCTCGACATACTCCA 1993823 37 100.0 37 NNNNNNNNNN ..................................... AAATCTTTGGGCTGTACGGCGGCGATCCGCGCAATCC 1993897 37 100.0 36 NNNNNNNNNN ..................................... TGTCGTTTGAGAACTTCAACGCCGATGGCAGATCGA 1993970 37 100.0 36 NNNNNNNNNN ..................................... GGAGTGCATACCAGCAGGCGATTTTCGAGGCAGTAG 1994043 37 100.0 36 NNNNNNNNNN ..................................... ACCGAGGCCTGCACGGCAGCGACGCCGGCACGTCGC 1994116 37 100.0 35 NNNNNNNNNN ..................................... CGATCACGGCGTTTCTGACTCCAGCGCCAGCACGC 1994188 37 100.0 36 NNNNNNNNNN ..................................... AGACAATCGAGCAACGGCGGGGGGGCAAGCCTTGGC 1994261 37 100.0 35 NNNNNNNNNN ..................................... CAGCCAGCATGCGCATCGTTTCATCGCTGCGAGAA 1994333 37 100.0 35 NNNNNNNNNN ..................................... TCATCAAGATCGGCGCCAGCACGTATGTCCACTGT 1994405 37 100.0 35 NNNNNNNNNN ..................................... CCCCGCGGCACGAAATGCTGATGCGGTATCTCTAT 1994477 37 100.0 37 NNNNNNNNNN ..................................... TGGCGAATGATGGGATTCATATTAGAGCTGCTCCAGA 1994551 37 100.0 34 NNNNNNNNNN ..................................... CCCCTCGCGGGCGTTGGTCTCGGCAACGGGTTGT 1994622 37 100.0 35 NNNNNNNNNN ..................................... GCTGTAGTAATAAGAGCCGCACGGCTGAAGGAGGC 1994694 37 100.0 40 NNNNNNNNNN ..................................... TTTGGCTGCTCGCAACCATCCTACGCCCTCACGAAGAAGA 1994771 37 100.0 36 NNNNNNNNNN ..................................... TGTGATCGGCCTGTGGGGCGTGATCGACATTACGGC 1994844 37 100.0 35 NNNNNNNNNN ..................................... GACGGTAAGCAGACGCTCGACTTCTATTTTCTTCT 1994916 37 100.0 35 NNNNNNNNNN ..................................... CCACCCGAAGTGCCGGACACGACAAACTGGTCGAC 1994988 37 100.0 35 NNNNNNNNNN ..................................... CCGACTACGCCGGCTTTCGGGTGTTGTGGCTGGCC 1995060 37 100.0 37 NNNNNNNNNN ..................................... TCGTATCAGCCGCTTGTGCCGCTCGCCGACCGCATCG 1995134 37 100.0 36 NNNNNNNNNN ..................................... GATCCTCTCTGCCGCCAACGAAGCCCTGGCGGCAGA 1995207 37 100.0 36 NNNNNNNNNN ..................................... TAGCGCTCGGCTGGTGGGGAGTGAACGAGTATTTGC 1995280 37 100.0 36 NNNNNNNNNN ..................................... TGGTACGCCCGTTGGCGGCCGGAGGACGAGCTAGGG 1995353 37 100.0 38 NNNNNNNNNN ..................................... GCGAGGCATCACGGGCACAAGCAACGAGTTCGGGCTGT 1995428 37 100.0 36 NNNNNNNNNN ..................................... CCTCAATCTGCTGCGCATCTTGTGTAGCAGCAACGA 1995501 37 100.0 35 NNNNNNNNNN ..................................... GGAAACTTTGGGAGATGAGGACATGGACGCAGATA 1995573 37 100.0 34 NNNNNNNNNN ..................................... CAAAATTCATGTCGCCCCCTATTCAGAGAGGCAA 1995644 37 100.0 35 NNNNNNNNNN ..................................... GTCTGGTGGCGGCTGCCACACGCGAGCTGCAAGAT 1995716 37 100.0 35 NNNNNNNNNN ..................................... CGTCGTAGCCGAGCTCGGCCCAAAGCTGCCGCTGT 1995788 37 100.0 35 NNNNNNNNNN ..................................... ACCTTCGCGTCAGGAGCGGAAAAGCGCAGCACCCG 1995860 37 100.0 37 NNNNNNNNNN ..................................... TGTCGTATCAGCTCCGCCGTGCGCAAGGCGAAACGGG 1995934 37 100.0 35 NNNNNNNNNN ..................................... CCTCTGTGGCGGAGACTTTCAGTTTTGGGTCGACA 1996006 37 100.0 37 NNNNNNNNNN ..................................... ACCATAAGTAGCTTTGCAACGAAATACTTGTGTCCGA 1996080 37 100.0 35 NNNNNNNNNN ..................................... AACGACGCGTGGTATTTCGTTGTTTTCGCCGACGC 1996152 37 100.0 36 NNNNNNNNNN ..................................... TTACGATCAACGGGACGCGCGACACCATCGAGGTCG 1996225 37 100.0 36 NNNNNNNNNN ..................................... CGATGCATTTGCGCTCTCCATGTCGACGCTCAAGGA 1996298 37 100.0 37 NNNNNNNNNN ..................................... ATTCGCCGCATCGCTGCGGCGAGCCGGGCAGCGAGTG 1996372 37 100.0 38 NNNNNNNNNN ..................................... GGGTTCGTGCCCCCCGCAGCGTTCAGAAACCTGAATCC 1996447 37 100.0 36 NNNNNNNNNN ..................................... ATGACCACATCCACCATTTCGCCCGCATCGGCCGAA 1996520 37 100.0 36 NNNNNNNNNN ..................................... GTCTGACCGTAAAGCGGTCACTGATGAGGCCAAACA 1996593 37 100.0 36 NNNNNNNNNN ..................................... CTTCTCCCTCCCCGACGAGTACGCCGGCGGGTGGGT 1996666 37 100.0 35 NNNNNNNNNN ..................................... GGGCAAGCGCAAGCTGGAAATCCTCCATGGTCAGC 1996738 37 100.0 36 NNNNNNNNNN ..................................... CTGTTCGCTTCTGGCTCGGACGCCGGCACGTCTTTC 1996811 37 100.0 36 NNNNNNNNNN ..................................... CAAAATCAGCTGGACATACACGGTTCCGCAGCTTGT 1996884 37 100.0 38 NNNNNNNNNN ..................................... CTCATTTCGCTGGCCCGCTTTGCGCTGGAGCTGCCGAA 1996959 37 100.0 36 NNNNNNNNNN ..................................... TTGCTTGAGGCGATGCTGCAGGATAGTGTTGCGGGG 1997032 37 100.0 36 NNNNNNNNNN ..................................... TTGTTGTCAAAATAGCTGCGCCAGTTTGTGCCGTCA 1997105 37 100.0 35 NNNNNNNNNN ..................................... TCTGTGCAGCGGATCGCAGAGAGGCTTGATGTTGC 1997177 37 100.0 36 NNNNNNNNNN ..................................... CGGCTAGCAGACCATGGATTGTTGCCGCCGCATCGG 1997250 37 100.0 36 NNNNNNNNNN ..................................... CGCTGCAGAATGCCTTCAATGCCTTCAAGACGTTTC 1997323 37 100.0 35 NNNNNNNNNN ..................................... CCGACAGCGACGGAACAGTCCACAGCAGCCGCGCC 1997395 37 100.0 37 NNNNNNNNNN ..................................... ACGCTTTAAGGGCAAAGGTTGGTACAAGTCGTTCACT 1997469 37 100.0 37 NNNNNNNNNN ..................................... TTCGGCTTTCAGCCGGGGGTAGTTGACGTTGCTTCCT 1997543 37 100.0 36 NNNNNNNNNN TC................................... TTCCGATTCGTCTAACGTCGGAATGGCTTCGATTTT 1997616 37 100.0 36 NNNNNNNNNN ..................................... TTAAAGACGGCGTGGCGCAGGTTGGCTCCGGTAAGG 1997689 37 100.0 35 NNNNNNNNNN ..................................... TCCTGCCTGCCCCGCCCCTCGCGGGCATTGGTTTC 1997761 37 100.0 37 NNNNNNNNNN ..................................... AGAAACTGCAGCTGCCGCTCGGTCAGCACGGTCTGGT 1997835 37 100.0 35 NNNNNNNNNN ..................................... TTGCCAACGCCGTTTCTTCCTTGCGAAAGAAACGG 1997907 37 100.0 36 NNNNNNNNNN ..................................... AGTAAATAACCGGTGTAAATCGTAAAAGTCGTCGGC 1997980 37 100.0 36 NNNNNNNNNN ..................................... ACAAGGACGCCATGGAGGTTTGGAGAGAACTGAAGT 1998053 37 100.0 37 NNNNNNNNNN ..................................... GGGAAGAGCGCTTCGGTCAATTCCGCCCAGCTCATGC 1998127 37 100.0 35 NNNNNNNNNN ..................................... CTCAGGGCGTATCAGCGGGCGCTGGGCTGGACGAT 1998199 37 100.0 35 NNNNNNNNNN ..................................... TCGCACGAGGCGGATGCCTCGACTGCCATAGATCC 1998271 37 100.0 37 NNNNNNNNNN ..................................... GCCAACGCCTCCTGCAGCACGCCGGCGATTTCGCTCA 1998345 37 100.0 37 NNNNNNNNNN ..................................... ACTACAGCCACACCCAGCCCCGTGACGTTGCGCCCGA 1998419 37 100.0 35 NNNNNNNNNN ..................................... CTAGCTCCTGAAGATGCACATGCCCACTGCGGTTA 1998491 37 100.0 35 NNNNNNNNNN ..................................... CTCAAAAAAAAGCTCCCCCCCCTGGGGTTTCCAGG 1998563 37 100.0 35 NNNNNNNNNN ..................................... GAAGACGTTGACGGCTTTCTCGGCGTGGACACCGG 1998635 37 100.0 37 NNNNNNNNNN ..................................... CGGCAAGGTGGCGAAGGAGGCAGGCTCTGAGCAAGGG 1998709 37 100.0 36 NNNNNNNNNN ..................................... GAAGTTGACATCAACCCGCCGTCGCCCCCGCAAGCG 1998782 37 100.0 40 NNNNNNNNNN ..................................... TTCGGGTGCTGACGCACTTCCGGCTTCGCTGGCAGATCAA 1998859 37 100.0 35 NNNNNNNNNN ..................................... CTCGTTATCCGCTGCGCGTGGTGGAAGGGTTCCGC 1998931 37 100.0 36 NNNNNNNNNN ..................................... CTTGCTGTCATCAAACAGTACATCGAAAACCAAAAA 1999004 37 100.0 38 NNNNNNNNNN ..................................... GCTTTTTCTATTCTGCCGAAGAAGACGGCCCTGCAGTT 1999079 37 100.0 36 NNNNNNNNNN ..................................... GCGCAAACGCTGCGGCGGTCGATGGCTATGCTTTGG 1999152 37 100.0 36 NNNNNNNNNN ..................................... ACTCGCTCGCGTCATGCTTTTCGCACAACGTGTCTG 1999225 37 100.0 37 NNNNNNNNNN ..................................... CTGTCTCACAAGCTGCGTGAAGAGCGGCGCCATGCGT 1999299 37 100.0 38 NNNNNNNNNN ..................................... TCCGCCACCGTAAAGAGCCGCACACGCAGACTATCGGT 1999374 37 100.0 36 NNNNNNNNNN ..................................... ACCGGATATTGCCGCAGCCGCCAAGAGGACGACGCT 1999447 37 100.0 36 NNNNNNNNNN ..................................... CTCATGACGACGCCGAGCCACCGGCGCCGTCATTTT 1999520 37 100.0 36 NNNNNNNNNN ..................................... ACTTCCTGCATCGCTACTAATCGACCTAATGGAGCA 1999593 37 100.0 34 NNNNNNNNNN ..................................... ATTCCTGCGGGGACAGATTGGTAGTGGCGAAGAT 1999664 37 100.0 37 NNNNNNNNNN ..................................... GTTGCTCGATCTGCTGGCGCAGGCCATTCCGCCACCA 1999738 37 100.0 36 NNNNNNNNNN ..................................... GCTTCCACCATCGCCGCCAACGTCCGCAGTATCGCC 1999811 37 100.0 37 NNNNNNNNNN ..................................... TCAATTCGTTTTCCAGTGCATCAAGCGTGTCTTCGGC 1999885 37 100.0 35 NNNNNNNNNN ..................................... GGAATTGCTCAGCTACCAATCGTCTGCCCAGGTCA 1999957 37 100.0 34 NNNNNNNNNN ..................................... TTGTACTCCCATTTATAACGGTCTAGCCTGGGAG 2000028 37 100.0 36 NNNNNNNNNN ..................................... AGGAGAGACTCAGCCGGTCTCTCCATTCTTCTGGAT 2000101 37 100.0 36 NNNNNNNNNN ..................................... CGCTGTGTGGGAGCCCGGCGGGGCCGAAGCCCGGCT 2000174 37 100.0 35 NNNNNNNNNN ..................................... TACGAGCTTCGGGCCCTCCGCCGCTGGCTCGAAAC 2000246 37 100.0 37 NNNNNNNNNN ..................................... ACGGTCCCAACGACCCTCGCAACCCGCTGCGCGTGCG 2000320 37 100.0 35 NNNNNNNNNN ..................................... AACGTGCCAGTCGTGCGTAACTTCAACCGCACGCA 2000392 37 100.0 36 NNNNNNNNNN ..................................... CAGCGCCGCTGCCGCATCGCCTCCCTTAACCAGGAC 2000465 37 100.0 35 NNNNNNNNNN ..................................... GAGCAGACGGCAAGGGAGTTGCGGGATGGGCTGAG 2000537 37 100.0 35 NNNNNNNNNN ..................................... GCGGCAACTACACGCCACCGGCAATCTCGTAAGAT 2000609 37 100.0 35 NNNNNNNNNN ..................................... GCTACATGGAAACAACTCCCCGCTCGCTCGAAACA 2000681 37 100.0 35 NNNNNNNNNN ..................................... CAAACGAAGCGACAAGGCCAGTCAGCGGACCTTGT 2000753 37 100.0 37 NNNNNNNNNN ..................................... TCCCAATAGTTGCGCCGCTCGACAATTATGTCAATTT 2000827 37 100.0 34 NNNNNNNNNN ..................................... TGGCTTCCACGGCTCGCCAGGTGTGGGTTGATTG 2000898 37 100.0 38 NNNNNNNNNN ..................................... CTCCGCTCCCAGCATCGCCAGCGCCGTGGCCGTACGGA 2000973 37 100.0 36 NNNNNNNNNN ..................................... TGTGCCTTTCTTGCTGCTTGAATCAAGCGGGTCGGG 2001046 37 100.0 36 NNNNNNNNNN ..................................... GACAAAGACAGCTCGGCCATGCGCCTGGCTGCCTCG 2001119 37 100.0 36 NNNNNNNNNN ..................................... TTCAAAAAACTCATACCGGTCCTCTTCGCCCCGCGC 2001192 37 100.0 35 NNNNNNNNNN ..................................... TCATCAAGATCGGCGCCAGCACGTATGTCCACTGT 2001264 37 100.0 38 NNNNNNNNNN ..................................... AAACGGAAACCGACGCCACACACCACAAAAAAGCACAC 2001339 37 100.0 37 NNNNNNNNNN ..................................... TCACCCGTGCGCAGCACGTTGGCGATACGCTCTACTT 2001413 37 100.0 37 NNNNNNNNNN ..................................... GCTCATGGTCGTCCTCGTCGTTTCCGACGCCGACCAT 2001487 37 100.0 35 NNNNNNNNNN ..................................... TTTTGGTATTAACACACAAGAACACACCTTAAAAC 2001559 37 100.0 37 NNNNNNNNNN ..................................... GATATAGAACAAAGTGTTCTAAAAGTGGAACATAGTG 2001633 37 100.0 39 NNNNNNNNNN ..................................... ACCTGTAGTGCGCAGGTTGGCTGCAATCGCTGTCAGATT 2001709 37 100.0 41 NNNNNNNNNN ..................................... GGCGTGCCGGAGTGACGCGTGAACGTCCATGTCTGCGTTCC 2001787 37 100.0 35 NNNNNNNNNN ..................................... ACAAAACGTTGTCAATTGGTATCGATCGCCAATCT 2001859 37 100.0 35 NNNNNNNNNN ..................................... GTCGTTTTGGAAGCGGCAGATGCGCAGGCGAGAAC 2001931 37 100.0 35 NNNNNNNNNN ..................................... CGTTCCACTTCTATCAACCCCAACCGGCTCTCTAT 2002003 37 100.0 35 NNNNNNNNNN ..................................... ACAAGAACGCACCTTAAAGCGTTTATAGACGCAAT 2002075 37 100.0 36 NNNNNNNNNN ..................................... ATTCCGTTTCGTAAATCATGTTTTGTAATATTAAAT 2002148 37 100.0 36 NNNNNNNNNN ..................................... AGGCGGCGTGAACAATGGGAGAAAGAAGGACATGGA 2002221 37 100.0 36 NNNNNNNNNN ..................................... TATTGAAAGACAAGGATAGCGATGACGAACGTCGTT 2002294 37 100.0 36 NNNNNNNNNN ..................................... TTGTTTAAGAATATATATATAACAAAAGATAAACAG 2002367 37 100.0 36 NNNNNNNNNN ..................................... CACGTACACCGGCACGCCCTGAGGCGGATTTTCGCC 2002440 37 100.0 36 NNNNNNNNNN ..................................... GGCTCGAAGATTTCTATTTCTCTTCCGATGTCCATT 2002513 37 100.0 36 NNNNNNNNNN ..................................... GTGTCGTGCGCAACCGTATTCTGGCGGGATGGAATC 2002586 37 100.0 37 NNNNNNNNNN ..................................... ATAACGATAACCGGGCAAGTTCTTGTCTGGACGCAAA 2002660 37 100.0 36 NNNNNNNNNN ..................................... CCTTTATCTCTACAGGGGTTCCTGGACTACCAGCGA 2002733 37 100.0 35 NNNNNNNNNN ..................................... TCGACTTAACCGAAAACCGAACAATTCACCGTTTT 2002805 37 100.0 35 NNNNNNNNNN ..................................... GTAGTACAGCGCACGCTGGGCGACACCATCAATAA 2002877 37 100.0 37 NNNNNNNNNN ..................................... TGGCCACCGGCTGGCCAGAAGGCGAGACAGAGAACGT 2002951 37 100.0 35 NNNNNNNNNN ..................................... GACGACTCGACGCACTCCGTGAACGCAGCGACGAC 2003023 37 100.0 37 NNNNNNNNNN ..................................... TTCACAAAACGAGCCAGAGGTAGCTTCGCCGCTACCA 2003097 37 100.0 35 NNNNNNNNNN ..................................... TGCCGCTCTTGGGCACTCGTGCCAGCGGCACAATC 2003169 37 100.0 36 NNNNNNNNNN ..................................... TGCGTTTGTGTTGCGTTTGTGTTACGATTGAACCAT 2003242 37 100.0 37 NNNNNNNNNN ..................................... CCTTCATTGGTGAAGATGGCTTGCCAGTGCTGGAGCA 2003316 37 100.0 35 NNNNNNNNNN ..................................... GCAACGATGGCGCGCAGGATGGCTGCCTGCGCCTC 2003388 37 100.0 37 NNNNNNNNNN ..................................... AGTGCGAATTGGAGAGCGTGCGCTGCGGCCTGGCATT 2003462 37 100.0 35 NNNNNNNNNN ..................................... AGATTTTGTGCCTCCGTGTTACTAGCACGGAGGCA 2003534 37 100.0 35 NNNNNNNNNN ..................................... TTATCACATCTCGGAGAGCACTTCGCCGTACAGCG 2003606 37 100.0 35 NNNNNNNNNN ..................................... CCGGAGCGTCTACATACTCACACGAAAATAAAGAC 2003678 37 100.0 36 NNNNNNNNNN ..................................... CTTGTTCTCCAAAGCAGTGAGGGATGAAATGAGCGA 2003751 37 100.0 36 NNNNNNNNNN ..................................... CTCGCTTAGCACACTGTTGGCGCGCAGCCGGAACGT 2003824 37 100.0 35 NNNNNNNNNN ..................................... GACGGATTTTGTATCAGGCAATGACGACGCCGGTC 2003896 37 100.0 38 NNNNNNNNNN ..................................... AAAATGAAGACGTTGTGGGCGGCGCACGAGGGAGAGGA 2003971 37 100.0 36 NNNNNNNNNN ..................................... GCATTACGCTCGTTCGCCACGACATACAGGACACCG 2004044 37 100.0 36 NNNNNNNNNN ..................................... TCTTCTGTAGTGACAGGTGCAGCAATCAAAGCTGCC 2004117 37 100.0 37 NNNNNNNNNN ..................................... ATACAATATCGGTCGAACGTGTTCAACCGGGCGCTTG 2004191 37 100.0 37 NNNNNNNNNN ..................................... GCTCGCGCATCCGCGCGAGCTTGATGGCGTTGATGGC 2004265 37 100.0 35 NNNNNNNNNN ..................................... GCAGCCCGGATGGGGTCGTAGAGCGGGCGGTTGGT 2004337 37 100.0 35 NNNNNNNNNN ..................................... CCTGTGCGATCATCGGCTCCAGCGCCGCCAACAAC 2004409 37 100.0 35 NNNNNNNNNN ..................................... AACAAACAATGCATCACATTTTACAGTCATCAGAA 2004481 37 100.0 36 NNNNNNNNNN ..................................... AAAATGCTGAGCTGCTGGTTGGCGGTTCGCCCTCTG 2004554 37 100.0 35 NNNNNNNNNN ..................................... TCAGTCAGCGTAACGACGTTCGTCATCGCTATCCT 2004626 37 100.0 37 NNNNNNNNNN ..................................... CAAAATATACGGCGCGCGACATGGGCATTTGCTTGAC 2004700 37 100.0 38 NNNNNNNNNN ..................................... CTTTCATGCTCATCTTTGTGTCCATTGTTTCTCTCCTT 2004775 37 100.0 35 NNNNNNNNNN ..................................... TCTAAATACGATGTCAACGAAGCAATATGCGACCC 2004847 37 100.0 39 NNNNNNNNNN ..................................... GGTCGAGTCTTTTTCGCTCTGGATCGAAAAGGTCACCGA 2004923 37 100.0 35 NNNNNNNNNN ..................................... AAATGATCGCAGAAACAAAATCACTCAATACCGTT 2004995 37 100.0 35 NNNNNNNNNN ..................................... TACTGAAGAGCGGTATGACCGATTTGCAGGCTGGT 2005067 37 100.0 35 NNNNNNNNNN ..................................... ATGTCAAGTTTTGCAACATGTAAATCGCATTTTTC 2005139 37 100.0 36 NNNNNNNNNN ..................................... TAGGGGGAACAATCATGATGATTAGGCCGATTAAAG 2005212 37 100.0 36 NNNNNNNNNN ..................................... ATAAAAACTTGGCCGACACATTTGAAGAAGTAGCGC 2005285 37 100.0 36 NNNNNNNNNN ..................................... TATAATCGAACGCCTCTTTGATGTCCGACCCGTTTT 2005358 37 100.0 36 NNNNNNNNNN ..................................... GTAATTTACAGATAAAGACAAATGGAACAAATAAAC 2005431 37 100.0 38 NNNNNNNNNN ..................................... TCCTGCCACACATAAACACCCAGAACGGCGGCCAGGAA 2005506 37 100.0 35 NNNNNNNNNN ..................................... AACGAACTATTGTAAGTCGCCTCAATCAGCAGCAA 2005578 37 100.0 36 NNNNNNNNNN ..................................... TAGTCGCAGTTGACGCAGTCGAAGCCTTCGACTGAC 2005651 37 100.0 35 NNNNNNNNNN ..................................... GCTTCATATGGTTCGCACGAACGGAGTAAATCATG 2005723 37 100.0 40 NNNNNNNNNN ..................................... TTACGCGAAAAAGACGAATTTGTCGGCTCCCTGTCAACAA 2005800 37 100.0 36 NNNNNNNNNN ..................................... CGATTGTAATGAAACTTACATTTACGCCGCAACGGG 2005873 37 100.0 36 NNNNNNNNNN ..................................... TTGATGTTTCAGGAATGACCATTATCACGGCGTGCA 2005946 37 100.0 37 NNNNNNNNNN ..................................... CCTGCCGATTCGCTAGTGCTGGACTTTGGCACGTCCG 2006020 37 100.0 36 NNNNNNNNNN ..................................... TTGGTTGGTATGGGCGTCGCCGCACTGAAAGCCAGC 2006093 37 100.0 35 NNNNNNNNNN ..................................... CCATGATCTTTTCCAGGTCGATCAGGCGGTTCCAC 2006165 37 100.0 37 NNNNNNNNNN ..................................... TCGATTCTGGATTCGTTGGTTGCGTGGAAATGGCCGG 2006239 37 100.0 36 NNNNNNNNNN ..................................... ACAGCCAGCGACGCCAGCACCTGCCAAAAATCAACC 2006312 37 100.0 36 NNNNNNNNNN ..................................... TTTCTTGCGAACTTCCTGTGAAAAAACTGACATTCT 2006385 37 100.0 37 NNNNNNNNNN ..................................... GCTTTTTACCCTTGACGGGCACCCACCCCCCTCACCG 2006459 37 100.0 35 NNNNNNNNNN ..................................... TTCCAGCGCAGCGACCCGCGCAGCAGGTGAAACGC 2006531 37 100.0 37 NNNNNNNNNN ..................................... CTCGATTACTGCGTCGATGTCTGCGATTGTGCGCTCC 2006605 37 100.0 35 NNNNNNNNNN ..................................... AGAGCACCGTCGCCAGATCTTCTTCAAGCCACGCC 2006677 37 100.0 36 NNNNNNNNNN ..................................... GGAGGAGTGGTCGCAACAGGTTATTGGCAATACGAA 2006750 37 100.0 37 NNNNNNNNNN ..................................... CCGCTGGGGGCGATGGGGACGGCGTGACGTTGATGAC 2006824 37 100.0 37 NNNNNNNNNN ..................................... TGCAGTTTGCATCGGGCGATATTGATGTCGTTATCAA 2006898 37 100.0 35 NNNNNNNNNN ..................................... TCTTGACTAAATACAGCCGGTTGTTGGCGGACTGT 2006970 37 100.0 35 NNNNNNNNNN ..................................... CGGCGAATTGCAGGCGTATACGCTCCAAGAACGAC 2007042 37 100.0 36 NNNNNNNNNN ..................................... CATCGCAAAAGAAGGTGCATTGTTGTTCGCTCCTGC 2007115 37 100.0 35 NNNNNNNNNN ..................................... GCGCCGCCTCCCGCCACTCCGCTTCGATGGCCTTC 2007187 37 100.0 37 NNNNNNNNNN ..................................... TTCACAGCCGGTCGCGGAGGGGTCTACCTCTGGCGAA 2007261 37 100.0 36 NNNNNNNNNN ..................................... CACGATGTGCCGGTGAGCGTGCGCCCGTTTGTTAGG 2007334 37 100.0 36 NNNNNNNNNN ..................................... GCGCTATGCGTCCCTCGGCGAGAATAGTATCACCAC 2007407 37 100.0 36 NNNNNNNNNN ..................................... TTTATCCATCCGTCATCACGTTGCCAACACAGCTCG 2007480 37 100.0 36 NNNNNNNNNN ..................................... CTTCAGTTTTGAGATTCCCGAGATCGGGGAAATTGT 2007553 37 100.0 35 NNNNNNNNNN ..................................... TTATTATCTTAGAACTGCCGCGAGCGATTTAGATC 2007625 37 100.0 36 NNNNNNNNNN ..................................... GTATGTTCGTGCCTCTTTCAGAGAGGCAGCGAAAAT 2007698 37 100.0 36 NNNNNNNNNN ..................................... TTTTATTCCAGCGGACGCGGATGACGGGCGAAAAAA 2007771 37 100.0 37 NNNNNNNNNN ..................................... GCGTTCTGGCATGGGCGGCAAGATACGCGCCGCCCGA 2007845 37 100.0 36 NNNNNNNNNN ..................................... TGCGTAGCTAGCTATAGCTGGAACCGAGCGGTACTC 2007918 37 100.0 35 NNNNNNNNNN ..................................... CAAATTCGCTCATAATGTCAACCGCCTCGGTCGAT 2007990 37 100.0 36 NNNNNNNNNN ..................................... GCCAGTAACCCCGAGACTCGCTGTTTTCAAATGTAG 2008063 37 100.0 37 NNNNNNNNNN ..................................... TTTTTCTCCTCCACAATTTGTCGGTCAAATCAATTCA 2008137 37 100.0 35 NNNNNNNNNN ..................................... GCTTCGGGACCTTGCGGAGCGAACTGGCGGATTAC 2008209 37 100.0 38 NNNNNNNNNN ..................................... TAACAGTGTTGAGTCGCCCGACAGCGCTATCTGGCCAG 2008284 37 100.0 35 NNNNNNNNNN ..................................... TCAGGAGGCGACCACTCCGGCAGCCCAGAGGCGTT 2008356 37 100.0 35 NNNNNNNNNN ..................................... TCGACAGCGTGAACGCCAATTCCGCCGCATACGAC 2008428 37 100.0 38 NNNNNNNNNN ..................................... TTCGACCGGTACCGGAGCCGGGATCTCTCCCGGCTTAA 2008503 37 100.0 37 NNNNNNNNNN ..................................... ACTACACGCCGCAGACGCCGGAGCCGGATGGGGCGGG 2008577 37 100.0 37 NNNNNNNNNN ..................................... GAGATTGAAGCAATCTACGGTGACGCGATACCGATTT 2008651 37 100.0 35 NNNNNNNNNN ..................................... CCAAACGGTACAGCCAGGAGTCAATGTCGATAGCC 2008723 37 100.0 36 NNNNNNNNNN ..................................... GTCGAAGGCCTACAGGAGAGAGCGACAGAAATAGGT 2008796 37 100.0 37 NNNNNNNNNN ..................................... TTTTAAGAGAACGGAAAGAATTTTCACTAAATTTTAC 2008870 37 100.0 35 NNNNNNNNNN ..................................... AAGGTGTCTTCGTCTTCTCCCATATAGCATGAAAC 2008942 37 100.0 36 NNNNNNNNNN ..................................... TCGATGCTGCTGCGACGCTATCGACGCTGTACTGCG 2009015 37 100.0 37 NNNNNNNNNN ..................................... TCAAGAATCGGAATTGCGGCTTCGCCTAACCGCCTTA 2009089 37 100.0 38 NNNNNNNNNN ..................................... ACTCTTCACCTGCCGAAGCACCGATCTGCCACTCGGAA 2009164 37 100.0 35 NNNNNNNNNN ..................................... TTGTCCGATTTTAATTTTAGTTTGCGTTTAATGTT 2009236 37 100.0 38 NNNNNNNNNN ..................................... TACGCTTTTTGCCACGGCCAGACGCACGGAGTAAACGT 2009311 37 100.0 37 NNNNNNNNNN ..................................... TGAAGGCAGGTATTACGTTGGACCCTGGCTATGAAAG 2009385 37 100.0 35 NNNNNNNNNN ..................................... TTGGCCAAGCCCTGGCCACCGGCCGGCCCGACGGC 2009457 37 100.0 36 NNNNNNNNNN ..................................... TCACAGCTTTTGAAAATAAGAGCCGACCGTCGGGAA 2009530 37 100.0 35 NNNNNNNNNN ..................................... GTCTGGAACGTCAGGTAGACGCGTGGCCGATCGCC 2009602 37 100.0 37 NNNNNNNNNN ..................................... CCAATACATCTGCAAAGTAAGCTAGCGCCTGGGACGG 2009676 37 100.0 39 NNNNNNNNNN ..................................... AGGTAATGCCGTCTTCACTGCGAAAGTAAAGCGTCAGAC 2009752 37 100.0 36 NNNNNNNNNN ..................................... GACGGTGTGCCTGGCTGGATTTCGCCTGAGGCGCTG 2009825 37 100.0 35 NNNNNNNNNN ..................................... ACCGTGCCGAAATTAACATCAATATCGCCGCCAAC 2009897 37 100.0 36 NNNNNNNNNN ..................................... AACATATGACGTCGATTAGTTTTGCAGGAAGGAGAT 2009970 37 100.0 35 NNNNNNNNNN ..................................... ATCCAAACGGCGTGCGGCCAACAGAGGGGCAAGAC 2010042 37 100.0 37 NNNNNNNNNN ..................................... CTTGAAACTGATTAATGAGCTGACCACGGCCGGAATC 2010116 37 100.0 37 NNNNNNNNNN ..................................... GTCTTTAATTTTGTACAGCGTCAAATTTACTCTTTCC 2010190 37 100.0 36 NNNNNNNNNN ..................................... CGGCAGCTTTGCGTCTTCGCCGCCGAGCAAGTCGCA 2010263 37 100.0 35 NNNNNNNNNN ..................................... TCGCCAACATCGTGCCGACTATCGCCGGAATGGTT 2010335 37 100.0 37 NNNNNNNNNN ..................................... CGGATTCTTAATGAGCGAGCTACTAATGTTGTAAGCA 2010409 37 100.0 36 NNNNNNNNNN ..................................... ATCTTCCCCCCTTCGTACACCCTGGCGGTAACGAGC 2010482 37 100.0 36 NNNNNNNNNN ..................................... CGATCAGCAGCAACCGCTTGCGGTTGTCCAACTCCC 2010555 37 100.0 38 NNNNNNNNNN ..................................... ATAACGTGACACCGTTCTGCCCGCGACGGCACATTTCA 2010630 37 100.0 35 NNNNNNNNNN ..................................... GGCAACGGCGCAGGTACAACATCACGCTGCGACTG 2010702 37 100.0 34 NNNNNNNNNN ..................................... CTTTAGCTGATTCTATCCCTGGCACAACGGTTAC 2010773 37 100.0 35 NNNNNNNNNN ..................................... CCGCGCGTCGCAGGCGATCACTGCCATGTGCGGCA 2010845 37 100.0 36 NNNNNNNNNN ..................................... ATGACAAAGGACTCGATTACCTCCGGGCTGTTGGCG 2010918 37 100.0 36 NNNNNNNNNN ..................................... AACCAGCCGGCCAGCGCAGGCAGCCTGCGCGCACCC 2010991 37 100.0 36 NNNNNNNNNN ..................................... CCATCGTTTCGACTGCGCTGCAGGTGTCACTTTTTT 2011064 37 100.0 37 NNNNNNNNNN ..................................... ATTTGTAGCCGACTTGCAACGCGTAGGTCGGCTATTT 2011138 37 100.0 36 NNNNNNNNNN ..................................... ACGAAGGGATTGTCCGGTTCAGTAGCGGTGACCGTG 2011211 37 100.0 38 NNNNNNNNNN ..................................... GGTCAGATCGGTGTCGGAGGGTCACCGATCTTGGTTTA 2011286 37 100.0 36 NNNNNNNNNN ..................................... AAATGGTTTGTTCCCGTAAGACATTATTCACCCTCC 2011359 37 100.0 37 NNNNNNNNNN ..................................... CCATCTCTACCGCTTGTCGCACTCGGTCGCCATACCG 2011433 37 100.0 37 NNNNNNNNNN ..................................... CGGCATCCAACGCTTCGACGGATGGGCAGGACACTTC 2011507 37 100.0 37 NNNNNNNNNN ..................................... GCTTGTATTGGTCGGTGACTCTTATCTGTTTCCTGGA 2011581 37 100.0 37 NNNNNNNNNN ..................................... GCTGTCCACTTTCCTGCGCGTGCTGGAGGCGCTTGAC 2011655 37 100.0 36 NNNNNNNNNN ..................................... AGTTTTCAATATGCACGTTGAGGGTGACAGGCTGAG 2011728 37 100.0 39 NNNNNNNNNN ..................................... TTCAAGATTAACGGAGGGTGCGCCCCTCCATGCGAATGA 2011804 37 100.0 1 NNNNNNNNNN ..................................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 482 37 36 GTCTGAAGAAACGATCCAACAGCGAGGATACTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.05%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.10,-3.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [292,437] Score: 0/0.18 # # Final direction: R [0,0.64 Confidence: HIGH] >NC_017079 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2013095 37 100.0 38 TGTACTAAGT ..................................... AGCACGAGAGAGAAACACGTGGTTCTGGGTATTTTATC 2013170 37 100.0 37 GTATTTTATC ..................................... AACTACATCTGGCCTTTCCAGATAAATTTCTAACAAC 2013244 37 100.0 36 TTCTAACAAC ..................................... AGTTACCGTTACCGGGCGAATACCGCAGGCGGGCTG 2013317 37 100.0 35 AGGCGGGCTG ..................................... GCTATAGTTGGCTGCGCAGGACGATATTCGCACAA 2013389 37 100.0 35 ATTCGCACAA ..................................... ACTACACCCTGTCCGGCTTCGAGCGCATCGCCGGC 2013461 37 100.0 35 CATCGCCGGC ..................................... TCTGCAGCGGCAAGCTGTGGGGGGAAAGAGTAAAT 2013533 37 100.0 36 AAGAGTAAAT ..................................... CAATTCCGAACTTCTCCTCACTTGCATACAAACACG 2013606 37 100.0 37 TACAAACACG ..................................... GATTCAAACACCGCCATGTTTGGCGCAGAAGGCAAAT 2013680 37 100.0 36 GAAGGCAAAT ..................................... TGGAGGCCAGTCGGCGTATGGGCGACGGGCTGGACA 2013753 37 100.0 34 GGGCTGGACA ..................................... CGCTTTAGTCTCCGACGGTGGGCTCTGGACGTTC 2013824 37 100.0 37 CTGGACGTTC ..................................... TTTCTGTATTGTGTTGTTTTTCTCTTCTTTGTATCTG 2013898 37 100.0 34 TTTGTATCTG ..................................... CTGCGGTCTCCATGTCGATTGCGACCTGTGCGCT 2013969 37 100.0 38 CCTGTGCGCT ..................................... CTCCTGTGACCAATACGACAAACGCGGCGGCTGCCGCC 2014044 37 100.0 36 GGCTGCCGCC ..................................... CTGTTCCCGCTGTTGCAGCAAGCACAGCCTGCACAA 2014117 37 100.0 38 GCCTGCACAA ..................................... GTGCGATCAGCACCGTGCGCCTGTTCGTGGATGGCGTG 2014192 37 100.0 35 GGATGGCGTG ..................................... AACGACCGGTATGCGCATTACCGATGCGGGCGAAG 2014264 37 100.0 38 GCGGGCGAAG ..................................... AAATCATTGCCGGTGCGTGCAGTATAGATGCGCACCGT 2014339 37 100.0 35 TGCGCACCGT ..................................... GGCCTGTGGCATCGGCGCACCGGTGCTGCGAACAA 2014411 37 100.0 36 CTGCGAACAA ..................................... GTTCAATCTTACTGACCTCTACTGCTCTTATGGCAG 2014484 37 100.0 37 CTTATGGCAG ..................................... TCGTTTTCCGGTTCTCTGACCTTCTCTGTCTCACCGT 2014558 37 100.0 35 GTCTCACCGT ..................................... GGGCCTGGGGCACGGTGACAAACTATGCCGATGGT 2014630 37 100.0 36 TGCCGATGGT ..................................... GATTAACGCCTTGAAAGCGTAATATGAAAACATGTT 2014703 37 100.0 35 AAAACATGTT ..................................... GGTACCGTAGCGACGGTATTCTTGAGGCTCTCAAA 2014775 37 100.0 36 GGCTCTCAAA ..................................... ATTAATATTCAATCTATGACGACACAACAGCTTGCC 2014848 37 100.0 37 ACAGCTTGCC ..................................... CACGCAATTTCATCATTCGCCAAAAGGCGAATAGGAA 2014922 37 100.0 36 CGAATAGGAA ..................................... CGTCCTTGGCACGCTCGGCTGGCGTGCCGAGGCAGC 2014995 37 100.0 36 CCGAGGCAGC ..................................... GTAATCACAGAAGAAGGTGCGGCAAAGCAAATTCTC 2015068 37 100.0 35 GCAAATTCTC ..................................... ATCTAACAGCCGATGACGCTGTTAAAAGTGTAGGC 2015140 37 100.0 35 AAGTGTAGGC ..................................... GTTTACTGTAACACCGTTGTCCAGTAAATACCAGA 2015212 37 100.0 36 AAATACCAGA ..................................... CCCAATCCAGAGACTCATCGATCAATGCCTAGCCTA 2015285 37 100.0 35 GCCTAGCCTA ..................................... CCGCTTGTGTAGTTGTCCGCATCCGCCGTGCAAAT 2015357 37 100.0 38 CCGTGCAAAT ..................................... AAATTACAAGAGAATCCACGATAGACTTGATCGGCGCA 2015432 37 100.0 36 GATCGGCGCA ..................................... AGCAGAAACACGCAGTTTTCTGCTACATTGCGGCGA 2015505 37 100.0 38 ATTGCGGCGA ..................................... CTATAGTAATCTATCATAGCTTGTCTAACTACTGCAAT 2015580 37 100.0 35 CTACTGCAAT ..................................... TGGCTGGACGGCGCCGGAGGCGCTATCGACGGAAC 2015652 37 100.0 36 TCGACGGAAC ..................................... GGCCCGTAGGGGATATAACGAACAAGACCATCGAGC 2015725 37 100.0 36 ACCATCGAGC ..................................... GAATTATCAAGGTGCTGAAAACATTTTCCTGTGTCC 2015798 37 100.0 35 TCCTGTGTCC ..................................... AATATACCGTGGCGGTGCCGATGCGGATTTTCTGC 2015870 37 100.0 35 GATTTTCTGC ..................................... TTGATACTGGTAATCGACAGCGTGGTCGCTGCGCC 2015942 37 100.0 35 TCGCTGCGCC ..................................... CTGTGGCGGCGCTTCCCGTTTCCGGCTGACCCGCA 2016014 37 100.0 35 CTGACCCGCA ..................................... AGCCAGTGGCGAGCGTGATGGTTGTCCACGCCGAG 2016086 37 100.0 37 CCACGCCGAG ..................................... TGTTGTTTGCACCGTCATAGAGCGCCAGCGGCACATT 2016160 37 100.0 35 GCGGCACATT ..................................... CACAGACTCCCTCGCTGTGCCGGATGCTCAATTCC 2016232 37 100.0 37 GCTCAATTCC ..................................... CTGCGTTATGCTGCATCGCTACGACGCAACGACGCCA 2016306 37 100.0 38 AACGACGCCA ..................................... GGTCGCGGTCAGTGCCACTGAACACCGCAACGACTTGA 2016381 37 100.0 37 AACGACTTGA ..................................... GTTTGCAAGCAGACTTGAACGATGCATTGCTACGGTG 2016455 37 100.0 37 TGCTACGGTG ..................................... CATAATCATCCTTCCGTAATCTGTCGCAAATCCCATG 2016529 37 100.0 36 AAATCCCATG ..................................... TGCCGTTTGCCAAATTGACTGCATCGGCGTCAACAG 2016602 37 100.0 37 GCGTCAACAG ..................................... CCCAATTTATATCGGTTAAGGCGTTGATAATAGCGTT 2016676 37 100.0 36 TAATAGCGTT ..................................... ACATCCTGCATTCCGGTCGAGCTCAAATCGTAAAAA 2016749 37 100.0 37 ATCGTAAAAA ..................................... GTTTTCCAGGGCAAAACAAAACGCCGATGCGCGCTCA 2016823 37 100.0 37 TGCGCGCTCA ..................................... AAAGGTCTCAGAACGTGTCGGTTCAAAGTAAGCTGAG 2016897 37 100.0 37 GTAAGCTGAG ..................................... ACCGGAACTAAGCGCAGTGCTGCCTGCGCCTTGACCA 2016971 37 100.0 37 GCCTTGACCA ..................................... ACGCCGTTGCGATAGTCAAGCATCGCTTGCTTGACTA 2017045 37 100.0 36 TGCTTGACTA ..................................... AAAAAACAACCGGTGAGCAATTCAGCCCACCAGTCA 2017118 37 100.0 35 CCACCAGTCA ..................................... CTGCTCCGGCGTGAGCTGCTGGAACAGTTCAAGTT 2017190 37 100.0 36 AGTTCAAGTT ..................................... TGAGGTAAAAGAAATCTCCCCAAGGCGTCTTCGTCT 2017263 37 100.0 36 GTCTTCGTCT ..................................... GTAAATCCGCATACACGTCTGGCAAGTGCGCTTCAA 2017336 37 100.0 TGCGCTTCAA ..................................... ATTGCAAGCACATCATGGCAATGGGCACTTCGCACGGTCTGAAGAAACGATCCAACAGCGAGGATACTGAAAGCTCGGTCGAGCGGCCCTTCCAACACATCCAGAATGCGTCTGAAGAAACGATCCAACAGCGAGGATACTGAAAGATTGCAAGCACATCATGGCAATGGGCACTTCGCACGGTCTGAAGAAACGATCCAACAGCGAGGATACTGAAAGATCTAGCAGGTTGTCGGCAGCGTCGGCACTTCGCTGTCTGAAGAAACGATCCAACAGCGAGGATACTGAAAGCTTCCACATCGCCCCACCATATTTTGCGCCCGTCTGGTCTGAAGAAACGATCCAACAGCGAGGATACTGAAAGACGGTTCCGCTGGCACGAGTGCCCAACAACGGCATAGTCTGAAGAAACGATCCAACAGCGAGGATACTGAAAGGGCCTTTGGACTGCTATCCAGCGCTGGCCTGATAGGTCTGAAGAAACGATCCAACAGCGAGGATACTGAAAGTTGTTAGCTCCGTACTCAAACACGGTGCCGACTAAGTCTGAAGAAACGATCCAACAGCGAGGATACTGAAAGTTGGGAAAGAACAAATCACTATCGAGAATCAACGGAGTCTGAAGAAACGATCCAACAGCGAGGATACTGAAAGGTGCGGAAGTAAGGCAACCGCGTACACAGGCGCACTCGTCTGAAGAAACGATCCAACAGCGAGGATACTGAAAGCGGCGCTATACGACACACTGCGGCGATTGCGACGCTGTCTGAAGAAACGATCCAACAGCGAGGATACTGAAAGTCGCTACAACGACGCCGCTGCGGCGTTACTGCAACGTCTGAAGAAACGATCCAACAGCGAGGATACTGAAAGTACAGTGTCACTTTTACGGGTTTGCCTGTGGGCACTTGTCTGAAGAAACGATCCAACAGCGAGGATACTGAAAGCTTCGACGGAGAGGAAGGAATGGGAGTGCATCTTGTGTCTGAAGAAACGATCCAACAGCGAGGATACTGAAAGATGCGTCGGCAGCAACGCCGGGAAGCTTCCGCCACAGTCTGAAGAAACGATCCAACAGCGAGGATACTGAAAGAGGTGGCTTACAAGCTCTGGCGCTCCGGCGTCGATATGGTCTGAAGAAACGATCCAACAGCGAGGATACTGAAAGCGAAGAAAAAGTTCTGCGTCTCTTCGTTCGTGACCAGTCTGAAGAAACGATCCAACAGCGAGGATACTGAAAGACCAGTCGACACGCTTGCGGCGACTGGGATGATTGCGTCTGAAGAAACGATCCAACAGCGAGGATACTGAAAGCTAAAATCAAATGCATCTTCGCCAAGCTTGTTGCAAGTCTGAAGAAACGATCCAACAGCGAGGATACTGAAAGGCTGGTCAAGGACGTCGCACTGGCGCTGGCGGAATTGTCTGAAGAAACGATCCAACAGCGAGGATACTGAAAGGGAAACTCGCGCGCCTGCCGGTTCCATTTCAGTCAGGGTCTGAAGAAACGATCCAACAGCGAGGATACTGAAAGCAACCGGGAATTGTACGACGTGCTCAACACGGCAATGG ========== ====== ====== ====== ========== ===================================== 59 37 36 GTCTGAAGAAACGATCCAACAGCGAGGATACTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.05%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.10,-3.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [17,1616] Score: 0.18/0.18 # # Final direction: R [0.27,0.55 Confidence: MEDIUM] >NC_017079 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2017409 37 100.0 36 ACTTCGCACG ..................................... CTCGGTCGAGCGGCCCTTCCAACACATCCAGAATGC 2017482 37 100.0 36 TCCAGAATGC ..................................... ATTGCAAGCACATCATGGCAATGGGCACTTCGCACG 2017555 37 100.0 35 ACTTCGCACG ..................................... ATCTAGCAGGTTGTCGGCAGCGTCGGCACTTCGCT 2017627 37 100.0 36 GCACTTCGCT ..................................... CTTCCACATCGCCCCACCATATTTTGCGCCCGTCTG 2017700 37 100.0 36 CGCCCGTCTG ..................................... ACGGTTCCGCTGGCACGAGTGCCCAACAACGGCATA 2017773 37 100.0 35 CAACGGCATA ..................................... GGCCTTTGGACTGCTATCCAGCGCTGGCCTGATAG 2017845 37 100.0 35 GGCCTGATAG ..................................... TTGTTAGCTCCGTACTCAAACACGGTGCCGACTAA 2017917 37 100.0 36 TGCCGACTAA ..................................... TTGGGAAAGAACAAATCACTATCGAGAATCAACGGA 2017990 37 100.0 37 AATCAACGGA ..................................... GTGCGGAAGTAAGGCAACCGCGTACACAGGCGCACTC 2018064 37 100.0 36 AGGCGCACTC ..................................... CGGCGCTATACGACACACTGCGGCGATTGCGACGCT 2018137 37 100.0 35 TTGCGACGCT ..................................... TCGCTACAACGACGCCGCTGCGGCGTTACTGCAAC 2018209 37 100.0 37 TTACTGCAAC ..................................... TACAGTGTCACTTTTACGGGTTTGCCTGTGGGCACTT 2018283 37 100.0 36 GTGGGCACTT ..................................... CTTCGACGGAGAGGAAGGAATGGGAGTGCATCTTGT 2018356 37 100.0 36 TGCATCTTGT ..................................... ATGCGTCGGCAGCAACGCCGGGAAGCTTCCGCCACA 2018429 37 100.0 38 TTCCGCCACA ..................................... AGGTGGCTTACAAGCTCTGGCGCTCCGGCGTCGATATG 2018504 37 100.0 36 CGTCGATATG ..................................... CGAAGAAAAAGTTCTGCGTCTCTTCGTTCGTGACCA 2018577 37 100.0 36 TTCGTGACCA ..................................... ACCAGTCGACACGCTTGCGGCGACTGGGATGATTGC 2018650 37 100.0 36 GGATGATTGC ..................................... CTAAAATCAAATGCATCTTCGCCAAGCTTGTTGCAA 2018723 37 100.0 36 CTTGTTGCAA ..................................... GCTGGTCAAGGACGTCGCACTGGCGCTGGCGGAATT 2018796 37 100.0 37 TGGCGGAATT ..................................... GGAAACTCGCGCGCCTGCCGGTTCCATTTCAGTCAGG 2018870 37 100.0 TTCAGTCAGG ..................................... CAACCGGGAATTGTACGACGTGCTCAACACGGCAATGG ========== ====== ====== ====== ========== ===================================== 21 37 36 GTCTGAAGAAACGATCCAACAGCGAGGATACTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.05%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.10,-3.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [4331,82] Score: 0.18/0.18 # # Final direction: R [0.18,0.37 Confidence: MEDIUM] >NC_017080 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 768723 32 100.0 35 NNNNNNNNNN C...TCCG.TC..................... TGGTCCACCATGAGCGGGTTGCCATGGTGCAGGGT 768790 32 100.0 34 NNNNNNNNNN ................................ ACGAAGCGCTGCGAGAGCTGACGGCTGGCCAGAA 768856 32 100.0 33 NNNNNNNNNN ................................ TCCGTCCGGCCGCACCTCCTCCGGCATCGAAGC 768921 32 100.0 33 NNNNNNNNNN ................................ CCGCCGCCGCCGCAAGCGACCCGCTGCCTGCAG 768986 32 100.0 33 NNNNNNNNNN ................................ GGCCTTGTCGACGCCGATCGTCTTGTGCTCGCT 769051 32 100.0 34 NNNNNNNNNN ................................ GGCAGGGTCCGCCGCGGAAGGACCTCGACCCGGC 769117 32 100.0 36 NNNNNNNNNN ................................ GCTGCTGCCGCCGCCGGTGCTGGCCCCGGTGCTGGC 769185 32 100.0 33 NNNNNNNNNN ................................ CGGGGATCATGTCGATCAGCGGCGCGATAACCG 769250 32 100.0 34 NNNNNNNNNN ................................ ACGTCTACGTGGAGCGTTGCCCGCGAGGCTTTGC 769316 32 100.0 33 NNNNNNNNNN ................................ CGGAATCCCGCTTCTCTTTGTCGCGTTGCTTAT 769381 32 100.0 34 NNNNNNNNNN ................................ TTGAGCAACGGGAAGCGCTCTTGCATCCGTGAGT 769447 32 100.0 34 NNNNNNNNNN ................................ CGGTCGATCTTGATGCTGTGCATCGGGGGCTCCT 769513 32 100.0 34 NNNNNNNNNN ................................ GGAAGCCGGCGTCCGCCTCGACCTCGAAACAGTT 769579 32 100.0 34 NNNNNNNNNN ................................ GTTCGAGGCGGTCGAGGCGTTTCTCTCGGAGATC 769645 32 100.0 35 NNNNNNNNNN .........T...................... GGCAGCCAAGAAACCGGGTCGTAGGTGAGGGTCGC 769712 32 100.0 34 NNNNNNNNNN ................................ CCTCAGTACCAGGCACCATCGGCCGGCTCAGACT 769778 32 100.0 34 NNNNNNNNNN ................................ CTCGGATCGCGTCGAAGTCCTTGCGCGAGTCGAT 769844 32 100.0 34 NNNNNNNNNN ................................ CGCGGTCCACGCCGCTCGCCGCGAGCGCCTTCGT 769910 32 100.0 33 NNNNNNNNNN ................................ CAACTCCGGGAAGCGTCGTTTGACTACGTACCC 769975 32 100.0 33 NNNNNNNNNN ................................ GCGGCGGCGCCGAGTGCCGACCCGGCCGGCGTC 770040 32 100.0 33 NNNNNNNNNN ................................ CGGTCGATGTGAGGAGAAGAAGGGGCTGGAGCG 770105 32 100.0 33 NNNNNNNNNN ................................ CACCAGCGGCGGTCTAGGGACCCGAGACGCCGA 770170 32 100.0 34 NNNNNNNNNN ................................ GGGGGGTGCGACCGACCCGCGGTCGATGTGAGGA 770236 32 100.0 34 NNNNNNNNNN ................................ CCCCGTGGATCGTCCGCGTCTCGGCGTTCACCGA 770302 32 100.0 33 NNNNNNNNNN ...............................A GAACATCGTGATCCCGTCGACCACCCGCGACGG 770367 32 100.0 34 NNNNNNNNNN ................................ CCTCGGGGATCGTCGCCGCCGCGTCCGTCGTGGT 770433 32 100.0 36 NNNNNNNNNN ................................ GCTCATCAGCTTGAGCTGCGCGAACTCCATCTCGTT 770501 32 100.0 34 NNNNNNNNNN ................................ GCCCCAGCGGCCGCCACCAAGTGTCGCCCCAGGC 770567 32 100.0 33 NNNNNNNNNN ................................ CTGCTCACCCCCGCGGCGGAACGCTCCGCGGAT 770632 32 100.0 35 NNNNNNNNNN ................................ GTGGGCAGGTACGTCGGCGTCTCGCCCGGGCGGGC 770699 32 100.0 33 NNNNNNNNNN ................................ CAGGGCGTGGGCGCCGGCCATGTCGTCGGCGAT 770764 32 100.0 35 NNNNNNNNNN ................................ GAGCTGCTGGGGCGGCCTCTGCGGTCGGTGGCCGA 770831 32 100.0 35 NNNNNNNNNN ................................ ATCAGACCGTCGGCGAGGTGCTCGCCCCCCAGCTG 770898 32 100.0 33 NNNNNNNNNN ................................ CCGAGGCGCCGGTCGAGTTCGGCGGTCCAGACG 770963 32 100.0 35 NNNNNNNNNN ................................ CCCCAGGGGCCGCGGCTGGGCGTGTTCACGCGGTG 771030 32 100.0 34 NNNNNNNNNN ................................ GGATGCCGGGCAGGTCGCCGCCGCCGGGCTCGGT 771096 32 100.0 33 NNNNNNNNNN ................................ CTGCTCACCCCCGCGGCGGAACGCCCCGCGGAT 771161 32 100.0 34 NNNNNNNNNN ................................ CGAACTCGAACGCCGCCGACTCGTCCGCGCTCGT 771227 32 100.0 34 NNNNNNNNNN ................................ CCGTGCGGGTGCGGGGGGAGGGCGTGACGTCAGA 771293 32 100.0 34 NNNNNNNNNN ................................ CCCCGCCCGCGGCTCCAACGGTCGCCGGCGGCTT 771359 32 100.0 33 NNNNNNNNNN ................................ GCGTCTGCGGGAGGTGCGGCCCGGCGGGCCGCT 771424 32 100.0 34 NNNNNNNNNN ................................ CACGCGTGGGAGATGCGTGAGCGCGAGGTTGACG 771490 32 100.0 34 NNNNNNNNNN ................................ CCCGCCCCGGACCGGCCATGAGCCCCGGGGTTGG 771556 32 100.0 35 NNNNNNNNNN ................................ CTCCCGGACCAGCTGGAGCACGGAACCAGCATCGT 771623 32 100.0 34 NNNNNNNNNN ................................ GGGCCGAGCGCTGGTGGACCACGATCTACAGGGC 771689 32 100.0 33 NNNNNNNNNN ................................ CCGGCCCAAGGGCCAGTGAGCGGGGGACCGCTT 771754 32 100.0 33 NNNNNNNNNN ................................ GGCCCGGATGGGCGACTTCCTGCCCCGCCTGCG 771819 32 100.0 35 NNNNNNNNNN ................................ GCCACGGTCCGCGGAACCGGCCGATCGGTGGACAT 771886 32 100.0 34 NNNNNNNNNN ................................ CCCCGCCCGCGGCTACACCGGTCGCCGGCGGCTT 771952 32 100.0 33 NNNNNNNNNN ................................ CAGTACCAGGCACCATCGGCCGGCTCAGAGACT 772017 32 100.0 33 NNNNNNNNNN ................................ GGGGGCCACGATGGCGCCGGAGCGCCGGAGAGA 772082 32 100.0 32 NNNNNNNNNN ................................ CCGGGCGCGTAACTGGATCCGTCGCGGAAAAC 772146 32 100.0 34 NNNNNNNNNN ................................ AGACCAACCCGTAGTCGCTCGCGGCCTCGCTGGA 772212 32 100.0 34 NNNNNNNNNN ................................ GCCCATGCGTCCAGGTCGTCGTCGTCCGGGACCG 772278 32 100.0 33 NNNNNNNNNN ................................ GAGGGGCCATCGTCTTCCGCGCCGCCATCGTCA 772343 32 100.0 35 NNNNNNNNNN ................................ CCTCTTGCTCTCGACAAGGCTCTCGACGCCGCCGA 772410 32 100.0 33 NNNNNNNNNN ................................ GTGATCGCGTGCCATTCCTCGCTCAACCTGCGG 772475 32 100.0 34 NNNNNNNNNN ................................ GGCTGTAGGTGCATCCCACCGCCCACGCCGACGC 772541 32 100.0 36 NNNNNNNNNN ................................ GCGCATCTCGTACCAGTCGCCGTTCGTCACCCCGAA 772609 32 100.0 34 NNNNNNNNNN ................................ GGTATGCGACCTTCCGGCCGCCGCGTGCCGGACA 772675 32 100.0 34 NNNNNNNNNN ................................ AGACCAACCCGTAGTCGCTCGCGGCCTCGCTGGA 772741 32 100.0 1 NNNNNNNNNN ................................ NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 62 32 33 GTTTCGATCCACGCCCGCGTGGAGCGGGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.50,-7.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [31.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [209,202] Score: 0/0.18 # # Final direction: R [0.37,1.05 Confidence: MEDIUM] >NC_017093 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 6559915 19 100.0 41 NNNNNNNNNN ..TC......G.....G.. AGGCCGTCGGTGTTCACGTCGGTCGCGGACAGCTCGGCCGA 6559975 19 100.0 50 NNNNNNNNNN ..................C TCGTCCGCGAACTCGGCGGAGTCAGCGGTCCGGGCCGCAACCGGCTCGTC 6560044 19 100.0 29 NNNNNNNNNN ................... AACTCGTCCGCGTCCCGCACGGCAACCGG 6560092 19 100.0 23 NNNNNNNNNN .............C..... AACTCCGCGGTGTCGCCCTCGGA 6560134 19 100.0 41 NNNNNNNNNN G........G..C...GAA CGGGTCTCCGCGCCGCCCTCGCCGAGCGCAGCCTCGGTCTC 6560194 19 100.0 1 NNNNNNNNNN ................... NNNNNNNNNN ========== ====== ====== ====== ========== =================== 6 19 36 CTCGTCGTCCTCGTCGTCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [5-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [30.0-28.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [58,612] Score: 0.18/0.18 # # Final direction: R [0.41,0.55 Confidence: LOW] >NC_017093 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 6560987 19 100.0 32 NNNNNNNNNN ................... AACCACCACGGTTGCCACCCTGGTAGCCCCCG 6561038 19 100.0 38 NNNNNNNNNN ................... AGCCGCCCCGGTCACGGTCGCCACCACGGAACCCGCCC 6561095 19 100.0 26 NNNNNNNNNN ................... AGCCACCGCGGTCGCGGTCGCCACCA 6561140 19 100.0 38 NNNNNNNNNN ...AA............CG GACGGTCACCCTGCGGACGGTCACTACGGAAGCCGCCG 6561197 19 100.0 26 NNNNNNNNNN ................... AGCCACCGCGGTCGCGGTCTCCGCCA 6561242 19 100.0 29 NNNNNNNNNN ...AA......G.....CG GACGGTCACCCTGCGGACGGTCGCCACCA 6561290 19 100.0 41 NNNNNNNNNN ...AAC.....G.GG.C.C CCTGGAAGCCCTCACGCGGACCACTCGGACGGTCCCCGCCA 6561350 19 100.0 38 NNNNNNNNNN ...AA......G.GG.C.C CGCCACCCTGGTAACCGCCACGGTCACGGTCCCCGCCA 6561407 19 100.0 44 NNNNNNNNNN ...AAC.....G.GG.C.C CGCCACCCTGGTAGCCGCCCCGGTCACCCTGCGGCCGGTCACTG 6561470 19 100.0 26 NNNNNNNNNN ...AAA.....G.GG.C.C CGCCACCCTGGTAGCCACCGCGATCG 6561515 19 100.0 65 NNNNNNNNNN .....T.......GGAA.C CGCCACCCTGCGGACGGTCACCCTGCGGACGGTCACTACGGAAACCACCGCGGTCGCCCTGCGGA 6561599 19 100.0 38 NNNNNNNNNN .....C..A....GGAAAC CACCGCGGTCGCCGCCACCCTGGTAACCGCCACGGTCA 6561656 19 100.0 65 NNNNNNNNNN .....T.......GGAA.C CGCCACCCTGCGGACGGTCACCCTGCGGACGGTCACTACGGAAACCACCGCGGTCGCCCTGCGGA 6561740 19 100.0 38 NNNNNNNNNN .....C..A....GGAAAC CACCGCGGTCGCCGCCACCCTGGAAACCACCACGGTCA 6561797 19 100.0 38 NNNNNNNNNN ........A....GGAAAC CACTGCGGTCGCCGCCACCCTGGTAACCGCCACGGTCA 6561854 19 100.0 68 NNNNNNNNNN ........A....GGAA.C CGCCCCCCTGCGGACGGTCACTACGGAAACCACCCCGGTCGCCGCCACCCTGATAGCCGCCCCGGTCA 6561941 19 100.0 38 NNNNNNNNNN ........A....GGAAAC CACCGCGGTCGCCGCCACCCTGGTAACCGCCACGATCA 6561998 19 100.0 38 NNNNNNNNNN ........A....GGAAAC CACCGCGGTCGCCGCCACCCTGGTAGCCGCCACGATCA 6562055 19 100.0 65 NNNNNNNNNN ........A....GGAA.C CGCCACCCTGCGGACGGTCACCCTGCGGACGGTCACTACGGAAACCACCACGGTCGCCCTGCGGA 6562139 19 100.0 38 NNNNNNNNNN .....C..A....GGAAAC CGCCCCGGTCGCCGCCACCCTGGTAACCACCACGGTCA 6562196 19 100.0 38 NNNNNNNNNN .....A.......GGAACC CGCCCCGGTCGCCGCCACCCTGGTAACCACCGCGATCG 6562253 19 100.0 23 NNNNNNNNNN ........A....GGAA.C CGCCGCGGTCGCCGCTCACCGAG 6562295 19 100.0 1 NNNNNNNNNN ..C.G...A..CTGG.A.C NNNNNNNNNN ========== ====== ====== ====== ========== =================== 23 19 40 CGGTCGCCGCCACCCTGGT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [24-49] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [23.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [183,6091] Score: 0.18/0.18 # # Final direction: R [0.41,0.82 Confidence: MEDIUM] >NC_017095 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =========================== ====== 1593498 27 96.3 44 TATATCGAGA .....A..................... CTTCAAATACTTCCGTTTTCCTCTTTTCTTCGTCTTAATAATGT 1593569 27 100.0 46 TTAATAATGT ........................... CAAAGTGCAAGGAAACTTAGGAATTTGGTAGAACAGGGAACAAAGT 1593642 27 96.3 44 GGAACAAAGT ...........C............... CATTGAGATAAACCTACTAGTTAAAGCTGTGAAAGTAACACCGC 1593713 27 100.0 43 GTAACACCGC ........................... CTCAAGAAGATGGCAAACAGGAAATACAAAGGGATTTGGAAGT 1593783 27 96.3 ATTTGGAAGT .......T................... AACCGTAAGA ========== ====== ====== ====== ========== =========================== 5 27 44 TTCCATCCCTCATAGTCACTTCTAAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.96%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [65.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [289,546] Score: 0/0.18 # # Final direction: R [0,0.27 Confidence: MEDIUM] >NC_017095 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1576111 30 100.0 42 GTATTGGATA .............................. GATTTTAGAACATGTTGAATGGAGAACAAGTTCAATGGTCAG 1576183 30 100.0 39 CAATGGTCAG .............................. TAAATAATCCTGTCATCCTTAAACAGACTATACACAAAT 1576252 30 100.0 36 ATACACAAAT .............................. GGTTTGTAAGCGGATTCATCGGAGGATGGTATGCGT 1576318 30 100.0 39 TGGTATGCGT .............................. CTTACAATATTGGTTAACATAGATAAATATCTTCAACAA 1576387 30 100.0 37 TCTTCAACAA .............................. GGATATGATCAGAGGATCACTACTTGATAACGTATTT 1576454 30 100.0 44 TAACGTATTT .............................. AAAGGTTCGGTATTGAATACCGGACCACACCAAGGAAGACTATA 1576528 30 100.0 37 GAAGACTATA .............................. TGAGGAAGGTAAGATTCTCAATGAGGATGAGCTTAGA 1576595 30 100.0 43 TGAGCTTAGA .............................. TTTTACAGTAAGGAATTATTCACAACAGTAAGTAGTTACATTG 1576668 30 100.0 43 AGTTACATTG .............................. CCGTCAAAGAAGCGTTCTACTTTTTCGACTTGCATAAGCACGG 1576741 30 100.0 41 ATAAGCACGG .............................. CTGGAAGAAATCGCGGTTTGGTATGTTGGAGCAGTTGAAGA 1576812 30 100.0 44 CAGTTGAAGA .............................. AGGTGGGTATTTAGAGGGTTTAATAAAGACTTCGGTAATTGGGC 1576886 30 100.0 37 GTAATTGGGC .............................. TTTCTTGCTTCTCTTTCTCAATCTTTCTCATCGCTTT 1576953 30 100.0 40 TCATCGCTTT .............................. AAAAAACTAGATGTAGATTTAGAAAAGTATGATATTTCAA 1577023 30 100.0 42 GATATTTCAA .............................. CTCTATGCCTACGACGGAGAAAACGTCGTAGAAGTTCCACGT 1577095 30 100.0 37 AGTTCCACGT .............................. TCAAGTCAAGGCAAAAAAATCAGCTGTACGATTGGCT 1577162 30 100.0 42 ACGATTGGCT .............................. CGGACGGTATATGAGGGATAAAAGCGATTTCTTCAGGTACTA 1577234 30 100.0 44 TCAGGTACTA .............................. GAAAATACTTGAAGGGTTAAGAAGTTTAAAAAGTCAAAAAGCCA 1577308 30 100.0 37 CAAAAAGCCA .............................. TTTCTTGCTTCTCTTTCTCAATCTTTCTCATCGCTTT 1577375 30 100.0 40 TCATCGCTTT .............................. AGTGGAAAATTCCAGGAAAGGAACAGCCAAAGCTAAGAAT 1577445 30 100.0 41 AGCTAAGAAT .............................. GATAGTATGGTGTTAGGAGGAAGAGTGTCGGTGGAAGTCTT 1577516 30 100.0 41 TGGAAGTCTT .............................. TAAAAATGGCGAGGGTAAACTCGCCCTCGCCATGGCAATTC 1577587 30 100.0 39 ATGGCAATTC .............................. CCTGTACAGTGACAGCGAATTAGCTTTCGTAGACAATGT 1577656 30 100.0 39 TAGACAATGT .............................. TGTATAGGGTGTTCAGTAAAAGATATTTTGATGTTGATA 1577725 30 100.0 38 GATGTTGATA .............................. TGGTGTTGGGAGGTAGGATGGAGATCACAGTGAGATTT 1577793 30 100.0 41 AGTGAGATTT .............................. TGCCAAAGTCGAAAAGGAGGGCGAAAGTATGAAGATTACCG 1577864 30 100.0 43 AAGATTACCG .............................. CTGATATACAAGCTATTGCAAACGAAACTTTTTACAACACAAT 1577937 30 100.0 42 ACAACACAAT .............................. GGTTGAAAACTACGGCTTGTTGTTAAATGAATGTGTAGATTT 1578009 30 100.0 43 GTGTAGATTT .............................. TGAAAACATACGGTTCGCTTGAATTTGGTCGCTACCAAGTGGA 1578082 30 100.0 44 ACCAAGTGGA .............................. TTACAAGTGATAAGACAAATCAGTTAGGTATACTCGAAGCAACG 1578156 30 100.0 40 CGAAGCAACG .............................. GAAGGTAAAATCTGAAAATTATTTTGAAGTGAAAAAGCTT 1578226 30 100.0 33 GAAAAAGCTT .............................. TTTCCCACTCATCATATTTGTCTGGGTCAATCC 1578289 30 100.0 44 GGGTCAATCC .............................. CAGTTGTTGCTTGCTTTCGCCGTCCTCCTCGGGTTAAGCCCTGA 1578363 30 100.0 37 TAAGCCCTGA .............................. TAACCATTCGTTAAAATACCATAGTACGAAACCTACG 1578430 30 100.0 43 GAAACCTACG .............................. GGTGACAAAGCGCTTTTGATTATTGATTCAATGTACTCAAGAG 1578503 30 100.0 43 TACTCAAGAG .............................. TAAAACTATAAGAACGAACTATTATGATTCAGCAAAACTTTAT 1578576 30 100.0 40 AAAACTTTAT .............................. AACTAGTGTGTATCCCCGGGGAAAGATAATGGAATAGTCT 1578646 30 100.0 40 GGAATAGTCT .............................. AAGTTAATAGCTTAGCGATTTGAAACCTGCCGGATTTCTT 1578716 30 100.0 41 CGGATTTCTT .............................. GGTTGGCTCCAGCGAGAATATCGTGGTTTCCGAAAAGATGC 1578787 30 100.0 42 GAAAAGATGC .............................. GTGTGAGTGTGACTTCAAGGGAACTCAGGTTTTTAGAACGGT 1578859 30 100.0 42 TTAGAACGGT .............................. ATGGAAGTTGAAGGTGCAAACTATCAAGGCTCAAGCAACATA 1578931 30 100.0 34 AAGCAACATA .............................. TTTACGTGGTAGAAGGTAAGAACGGGGTGTATAG 1578995 30 100.0 44 GGGTGTATAG .............................. TTTGAAGATTTGGAGAGGGCTGTCGAGGTGAGTAATATGGGCTT 1579069 30 100.0 34 ATATGGGCTT .............................. TATCATTACGATTAGTGACGTTCAACAATTAAGA 1579133 30 100.0 39 ACAATTAAGA .............................. GTTATTGAAAAGACAAATGAAGGCTACGTTGTTCGTTTA 1579202 30 100.0 39 TGTTCGTTTA .............................. TACAAATTGTCCGATAAGGTTTGAATGTGCGGAATTCGA 1579271 30 100.0 37 CGGAATTCGA .............................. TAGTAGGGGAGTTCGGCGTTTACAAACTACACAAAGA 1579338 30 100.0 36 TACACAAAGA .............................. TGTATCTTCAAACAAGGAGGTGATTACATTGCGATT 1579404 30 100.0 40 CATTGCGATT .............................. TGGATCTAAACGAGGAGGAAGAAAAGCAGTTAAACCTTGC 1579474 30 100.0 43 TAAACCTTGC .............................. GATTTTTTCTGGTTTGAAAGTGATACAATCGCTGAATGGTTAG 1579547 30 100.0 44 GAATGGTTAG .............................. AAAGAACTGGTACAACATACGTAAGTGAAGATGGTAGCGTTTTC 1579621 30 100.0 40 TAGCGTTTTC .............................. TCATACGAAACTGGAATAAGCATTCAAAAAATCGAAAAAA 1579691 30 100.0 43 ATCGAAAAAA .............................. TTGTTGAAAGTCTGAATCCTGCAACGCTTTCCGGAAAGCTTAC 1579764 30 100.0 36 GAAAGCTTAC .............................. ACGAAGATACCAGAGTGTATGTAGAAGCGTACGTAA 1579830 30 100.0 42 GCGTACGTAA .............................. TTTGAAGCTTTACAAAGACGATGTTTATATTGACTTTTTCAA 1579902 30 100.0 38 ACTTTTTCAA .............................. TTATTCCTAAGCCAGATGTTTCGGGTTGGAAGGGGGGA 1579970 30 100.0 42 GAAGGGGGGA .............................. GGGCTATGTTTGGTTCTCTTGTGCAAGCGGCATATAGTAATT 1580042 30 100.0 40 TATAGTAATT .............................. AGTTTTATGAAGCTGTTTTAAAGTATTTTGAGAATACCGA 1580112 30 100.0 39 AGAATACCGA .............................. ACCCCACGTCGGCGGCAGGACGTGGGGGGGTATGGGAAA 1580181 30 100.0 41 GTATGGGAAA .............................. CAAGTTGAATGCTGTGCTATCCTGCATTAATTGGTATGATA 1580252 30 100.0 39 TGGTATGATA .............................. ACACTTCTAAGCTTCGCGGCTTTGATAGAGTCAGCGTTA 1580321 30 96.7 40 GTCAGCGTTA .........T.................... TGGAAAAGGTTCGAGTCAACACATTTTATGGCGAACTAAA 1580391 30 100.0 43 GCGAACTAAA .............................. GGGAGGTATGATTATGGAAGAAAAAGTTCAAGTGGAAAACACA 1580464 30 100.0 37 GGAAAACACA .............................. TATACTCATGTCTTGTTACTCCCTAAATGCTTTATGA 1580531 30 100.0 47 TGCTTTATGA .............................. CAATCCCGAACTGAATAAAGTTTTGCCAATCATTGGTGTTTCTCGCA 1580608 30 100.0 37 GTTTCTCGCA .............................. AAACGGGAGGTCGGAAAAATGTTGCAAATACCCATGA 1580675 30 100.0 37 ATACCCATGA .............................. AAACGGGAGGTCGGGAAAATGTTGCAAATACCCATGA 1580742 30 100.0 40 ATACCCATGA .............................. GAAGTTTTTATTTTTTTTACACACGTAATACACGTAATAC 1580812 30 100.0 38 CACGTAATAC .............................. GAAAACTTACTTATGTGCCCTTCCAAGCGGAGTTTGAT 1580880 30 100.0 41 GGAGTTTGAT .............................. GCATTTTATAGTTGGTTTGTGAATAACTATTTAAATGGCGT 1580951 30 100.0 43 TAAATGGCGT .............................. AGGTTGAGATGAAGTTGCATCACGATGGGGGGTTAAATTGTGA 1581024 30 100.0 42 TAAATTGTGA .............................. TATTACGTTGACGTTTAGAGATGATGTTTCAGATAGTGATGC 1581096 30 100.0 36 ATAGTGATGC .............................. TAGTTTCTCAGTTAAAGCCTGCTCCGTACAATCCAA 1581162 30 100.0 41 TACAATCCAA .............................. CATCAACAATCAAATCAGCAATATAAAAGAAGGAAAATTTG 1581233 30 100.0 38 GGAAAATTTG .............................. GGTGATAATAGACGTCAAAACGTACTATCCGAGTAAAA 1581301 30 100.0 37 CCGAGTAAAA .............................. CCTAACCAAAGAAAAAAAATGGAGGTGTTAAACATGG 1581368 30 100.0 TTAAACATGG .............................. TCGTAAAACC ========== ====== ====== ====== ========== ============================== 76 30 40 GTTTCCATCCCTCATAGTCACTTCTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [1884,967] Score: 0/0.18 # # Final direction: F [0.41,0.27 Confidence: LOW] >NC_017095 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1609470 30 100.0 39 GGTCTTACGA .............................. GAGTCCAAGAAATAGCTTTCAATAAGATTTACACTCTGG 1609539 30 100.0 45 TACACTCTGG .............................. AACTGGCTCGTCAAGGACCATACCTCGATAATCAACTTTCCACGA 1609614 30 100.0 36 CTTTCCACGA .............................. TAGAATCCCCTCCTTCATAATCAATAGCCAGTTTTC 1609680 30 100.0 32 GCCAGTTTTC .............................. CACTGTCTTTCATCTCCAAGCCGATGTAGATA 1609742 30 100.0 37 GATGTAGATA .............................. GTGTAAAATCTGGTGGGATACGTTTTTGAACTCTTTC 1609809 30 100.0 36 GAACTCTTTC .............................. AAAAGTTACCGTCTGTGGCTCTACGCCGTACAATCT 1609875 30 100.0 35 CGTACAATCT .............................. AGAATCCGTCTACCACTTTTATCTCCGAAACTCTG 1609940 30 100.0 37 CGAAACTCTG .............................. CTTTCACCACTATTTCGATGTACAGTCTCTTCATAAT 1610007 30 100.0 40 TCTTCATAAT .............................. TTACCATACTGTCTCGCCTCAACCCCTACTCTAATTGAGG 1610077 30 100.0 40 CTAATTGAGG .............................. CATTCAAATTAATTTGTCAATAGTTTTTTACTTGTTTTTG 1610147 30 100.0 36 CTTGTTTTTG .............................. AGCAGAGAGGATAGTGAAAAAAGGTGCCCTGCATAA 1610213 30 100.0 40 CCCTGCATAA .............................. CAACGTCCGACTCTCGCTTTTCTTCAAAGAAGTACGACTG 1610283 30 100.0 39 AGTACGACTG .............................. CCCCTCCTTGAGGATAGTTTTTTCTTTTTTTGAAAAAAG 1610352 30 100.0 38 TTGAAAAAAG .............................. CTCAGAAGACTATTCACTTTTCAAAGGCCCGCCCGTTC 1610420 30 100.0 42 CCGCCCGTTC .............................. TAAAATTCGTGTTACCTTTAATTCTCTTTGCCATGTGGTACC 1610492 30 100.0 39 ATGTGGTACC .............................. CTGATTTGATTGTTGATGTACCGTTGCACTTCTTGCCGG 1610561 30 100.0 39 TTCTTGCCGG .............................. TGTTGACCGTTCACCTTCACTGTAACTTCAAGATACAAC 1610630 30 100.0 34 AAGATACAAC .............................. TCTCATCAAACTCCGCTTGGAAGGGCACATAAGT 1610694 30 100.0 43 GCACATAAGT .............................. ATTTCACGAATGTCAGCAACGGTTGGCTGTTCTTTGAAGGTGG 1610767 30 100.0 42 TTGAAGGTGG .............................. AAAGAACAGGATGTAAACATCCTTTTCTTCCCATAATACAAA 1610839 30 100.0 36 ATAATACAAA .............................. CCGCCGCGTGGGGTGTCACCTCCTTCTTCTTTTTTT 1610905 30 100.0 40 TTCTTTTTTT .............................. TAGCGTCAGTAACACGATAGTTGAATAACGGTCTTTTGTT 1610975 30 100.0 37 GTCTTTTGTT .............................. GGCGTCAACCCGAGGACGATGGTGAAGGCGAGCAATA 1611042 30 100.0 40 GCGAGCAATA .............................. CCCAACCCTTCCAAACTTTTACCTTTGAGCTGTCCTCCAA 1611112 30 100.0 38 TGTCCTCCAA .............................. AATCCACTTGACTTGACAAGTACACTTTTGTACTCATC 1611180 30 100.0 38 TGTACTCATC .............................. AAAAAAGGCTGGCTTTCGCCAGCCTTCAATCTATCAAA 1611248 30 100.0 42 ATCTATCAAA .............................. CATACGGATAAACTGAAAATCTTTTGGGGTGCAGCTCTGTTA 1611320 30 100.0 40 AGCTCTGTTA .............................. CGTGATCCGGAATATGCACTCTCATTCGCCTAAATGCTTG 1611390 30 100.0 45 TAAATGCTTG .............................. ATAAAAAAAAGGCGACGCTTTACACGTCGCCTTCTTCAGCCTCCA 1611465 30 100.0 44 TCAGCCTCCA .............................. AGGCTGTCCTTACTTTTTAATCCTGACATGATGAGCTTAGGAAT 1611539 30 100.0 44 GCTTAGGAAT .............................. TGTTGTTTTACTTCTTGTTTTATCTCTTCCTGTTTTGCTTGTAC 1611613 30 100.0 40 TTGCTTGTAC .............................. ACAGATCGTAAAGTCTTTTCTTGATGTACATAACATACCA 1611683 30 100.0 41 TAACATACCA .............................. CCAACCGTGGATAATTCTCGAAAAAAACGCTGCCGATTGGG 1611754 30 100.0 41 GCCGATTGGG .............................. TTTTATCATCTGTTTTCGTTGTTTTGAATTTTAGGTATTCA 1611825 30 100.0 42 TAGGTATTCA .............................. TCGTCTAAAAACCACTTTTCACTAACAACTCCCATTGGTACA 1611897 30 100.0 39 CATTGGTACA .............................. AAAAACCCCTTCTTTCTTTTTTTTACTCATCATCAATGA 1611966 30 100.0 41 TCATCAATGA .............................. TCTGTAACACTCTTTGGTTTAAATCTTACAGCAATCAACAG 1612037 30 100.0 41 CAATCAACAG .............................. ACTTCAAACAGTTCCGCTACATTTTTCGGTTTGAATTTAAC 1612108 30 100.0 41 TGAATTTAAC .............................. ATAATCCTTTTTATAACTTCACTTTTCAACATACCTACCAG 1612179 30 100.0 41 TACCTACCAG .............................. TTCGCTTCAGCGTTTGCTCTGACTGTTGGATTTATTTTTTG 1612250 30 96.7 TTATTTTTTG .........T.................... ATTATTCCGTCTGGAACTTGCCCTGTTTGATCGAA ========== ====== ====== ====== ========== ============================== 41 30 39 GTTTTAGAAGTGACTATGAGGGATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [715,244] Score: 0.18/0.18 # # Final direction: F [0.86,0 Confidence: HIGH] >NC_017095 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1767917 30 100.0 41 GTTTTACGGG .............................. TTATTGAATATTCCGGCATATACACTGTGCCAATAGCAAAA 1767988 30 100.0 39 AATAGCAAAA .............................. GTCTTAACCTCAACGACGGCATCCTCTTCAGGAATGTAG 1768057 30 100.0 34 AGGAATGTAG .............................. GGCATTCCTCTACGAGTAGTACCTATCTCATAAT 1768121 30 100.0 37 ATCTCATAAT .............................. CAGTCCTTTGAGTTTGATTCCTTCTACCTCTAAAATC 1768188 30 100.0 41 CTCTAAAATC .............................. CAAGCCTCCCTTTTCTTTCTTGCCCGTTGACCCTTACCACG 1768259 30 100.0 37 CCTTACCACG .............................. AGAAAATTTCATTTCGATACACCTCCTTTTTTCTTGA 1768326 30 100.0 46 TTTTTCTTGA .............................. GCATAGGGTATCGATAGAGCATCAACAAATTCGGTAAATTGTTTAT 1768402 30 100.0 43 AATTGTTTAT .............................. TTTGTGGAATTTCGTGAATACTCAACATACTCCCATCTCCCTT 1768475 30 100.0 40 CATCTCCCTT .............................. TCTTTTGCAAGATTTCTGATTTCATATAGGCTCTTTTCCA 1768545 30 100.0 40 CTCTTTTCCA .............................. TCTTTGAAATATTTTTTTGCTTTTGTTGGTATTAACATTT 1768615 30 100.0 42 ATTAACATTT .............................. CTGAAAACCCTATAAACACCGTTTTTACCTTCTACAATATAA 1768687 30 100.0 TACAATATAA .............................. AAAAAAAGAA ========== ====== ====== ====== ========== ============================== 12 30 40 GCTTTAGAAGTGACTATGAGGGATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [71.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [475,136] Score: 0.18/0.18 # # Final direction: F [0.45,0 Confidence: MEDIUM] >NC_017095 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1791158 28 100.0 45 CACTATCCGT ............................ GAAACGAATCTGTCAGGATCGTGCAACAGCTCCTTGGTCAAAAGT 1791231 28 100.0 42 GGTCAAAAGT ............................ TTTTTCTGTCTCCTCATACCCATCGTTTCTCAGCAGAAACGT 1791301 28 100.0 42 GCAGAAACGT ............................ AGTTAACCATTATATATGTACCTGGCAGTAACTTGTACACGT 1791371 28 100.0 38 TTGTACACGT ............................ TGTCTCCAACTCGTTTTTCAGCCACTCACCAACTCTGT 1791437 28 100.0 47 CCAACTCTGT ............................ CCGCGTGGGGTTCCACCTCCTTTTTTAGTTTTTGTTTTTGCCAGGGT 1791512 28 100.0 43 TTGCCAGGGT ............................ TACCTCGGCCCGTTTTTCGGGCCGGATACCTAATCTCAACTGT 1791583 28 100.0 47 TCTCAACTGT ............................ TTTCTCATCCATTCAGACAATTTTATGAACCTAAAGAAACCCTTCGT 1791658 28 100.0 49 AACCCTTCGT ............................ CAAGGCGGCATTCGTCTTTGGACCAATCGAAACCGAAGGAAATACCCGT 1791735 28 100.0 44 AAATACCCGT ............................ TATCCGTTGCATAATTAATAAATAACCTCTTTGCCATAGTTTGT 1791807 28 100.0 42 CATAGTTTGT ............................ CCTCTTGATTTTCTAAATACTCCAACACACGCATATAGAAGT 1791877 28 100.0 44 ATATAGAAGT ............................ TCAGACTACCCCAAAAATCGTACTTCACATGATACAATACAAGT 1791949 28 100.0 44 CAATACAAGT ............................ CAACACTGCCTCTTTTCTGAAGCCGCGGTATTCTCTCTCGACGT 1792021 28 100.0 41 CTCTCGACGT ............................ TCCAACTGATACAACCCCCTTCCGATTTGCTTACATAAAGT 1792090 28 100.0 45 TACATAAAGT ............................ TTCACGTCTACTGATGAGAAATTTTCAAGCCCAAGTTTAATTGGT 1792163 28 100.0 42 TTTAATTGGT ............................ AAAGGAATGCCTTCCACGGTTCTATCAAATTTATGTCTACGT 1792233 28 100.0 41 ATGTCTACGT ............................ CTTAGTAGCGCTTTCATCATACTTTTTTCTTGCTAAACCTC 1792302 28 100.0 45 GCTAAACCTC ............................ TTTTTAACGAAAAATCTCACTTTCAACCAAACCATACTTTTAACC 1792375 28 100.0 45 ACTTTTAACC ............................ CTTCTGGATAAGCTGGCATTCTTGAAGCTTTGATTATTCTGTCGC 1792448 28 100.0 45 ATTCTGTCGC ............................ AAATATATAGCAATACTTACTTCGATTGGTCTAAAGTCATCAGGC 1792521 28 100.0 43 GTCATCAGGC ............................ GCAACGAACCATTTGGCTTTGATTTTACCATCAATGTCACGGC 1792592 28 96.4 ATGTCACGGC .....................G...... AGATCGTTTT ========== ====== ====== ====== ========== ============================ 21 28 43 TTTAGAAGTGACTATGAGGGATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.71%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [12,482] Score: 0.18/0.18 # # Final direction: F [0.41,0.18 Confidence: MEDIUM] >NC_017096 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 269623 29 100.0 39 TTAAAAAGGG ............................. ATATCAGAACCATTAAATTTTATCCCATAGCCTGAAGAA 269691 29 100.0 36 GCCTGAAGAA ............................. GAAAGATGTGTTGCAAGGTCGTCAACAAAATTGAGA 269756 29 100.0 36 AAAATTGAGA ............................. CAACAATTATTTGCGGGCCCAGAGGCGAGAGAAAAA 269821 29 100.0 35 GAGAGAAAAA ............................. CAAAAAGAAAGATAGGAGGTGAGAAAATGGAATTA 269885 29 100.0 35 AATGGAATTA ............................. TACTTAAAAGATTATCCAAAAGCATATACGGTTGA 269949 29 100.0 36 ATACGGTTGA ............................. GCAAGAAATTTAAAAGTAGAAGCAAGAGATTTAATA 270014 29 100.0 36 AGATTTAATA ............................. TCGCAAAAGCTTTGAAAATAAATAGGGGAGCTTTCA 270079 29 100.0 36 GGAGCTTTCA ............................. TTGCAAAAAACTCGCATCACAACTGCAACATTTTGC 270144 29 100.0 36 AACATTTTGC ............................. TCAGTATGGTGCATAATATAAAGTGTATCAAAAAAG 270209 29 100.0 36 ATCAAAAAAG ............................. TTCGTAAATGCTTGTGTCTATTTTTTCTGTGTAATA 270274 29 100.0 34 CTGTGTAATA ............................. CATCACTTTATTCACAGAAGGAGTAAGGCTTTTA 270337 29 100.0 36 AAGGCTTTTA ............................. AAAGAAATAGGGTTGTTCTGGGAGTTTTTAGACAGA 270402 29 100.0 36 TTTAGACAGA ............................. TTCTATCTCATTGACAAGATTAGCATTGCCTACTTT 270467 29 100.0 36 TGCCTACTTT ............................. CTTGTGCAGACTAACTTTATCTGCGTTAAGTCTCCT 270532 29 100.0 36 TAAGTCTCCT ............................. AAATGCAAATCGCCAAGCGGTATAAGATACACCTTA 270597 29 100.0 36 ATACACCTTA ............................. ATAGATTTAACGAATTTTGACAGAATTCACTTCTGG 270662 29 100.0 36 TCACTTCTGG ............................. CTTGTTTGGAGAGGAGATTTCGTAAAGTTCTATTTG 270727 29 100.0 35 GTTCTATTTG ............................. GCTTCAGAAATACGAAGAAGGGAAAAGAATGCACC 270791 29 100.0 38 AGAATGCACC ............................. AGTCTATGTATGGCAAACAATTGATAATCTTTTTCCAC 270858 29 100.0 36 CTTTTTCCAC ............................. TAAGGAATTACTGATCTAAATGGTTTACTATTTACT 270923 29 100.0 36 ACTATTTACT ............................. TTAACAAGAGAAGAGTTAAGCATTATACTTTACAGA 270988 29 100.0 36 ACTTTACAGA ............................. ACACCATAATCTTTTAGAATGCTAATCAGATTGCTT 271053 29 93.1 CAGATTGCTT .......................G....T TAATGAACT ========== ====== ====== ====== ========== ============================= 23 29 36 GTTTTATCTGAACCATGTGGGATATAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.52%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [235,67] Score: 0.18/0.18 # # Final direction: F [0.59,0 Confidence: HIGH] >NC_017101 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 123152 29 100.0 32 NNNNNNNNNN ............................. CGGTCGATATTAAGGCGGAAGAGGGGGAGGCC 123213 29 100.0 32 NNNNNNNNNN ............................. CCGAGGCAGATAGAGCTGTGGAATGTGTCATG 123274 29 100.0 32 NNNNNNNNNN ............................. CACGCTCTCCGTGCCTCAAATCCATTGTGAGA 123335 29 100.0 32 NNNNNNNNNN ............................. ATAGCGGCACCTGCGCCAAACCCCATTTTCAG 123396 29 100.0 32 NNNNNNNNNN ............................. TTCAGCGTTTGGCCATCAGCAAAAACTACCGT 123457 29 100.0 32 NNNNNNNNNN ............................. CGGGGCGGCTGTTGGTAATGCAGACAATCCGT 123518 29 100.0 32 NNNNNNNNNN ............................. TCGCCCACGGCCTGCCAAGACTTGCTCACTTC 123579 29 100.0 32 NNNNNNNNNN ............................. GCGGTGGATAGGCCTTCCATATCTGGCAGGTA 123640 29 100.0 32 NNNNNNNNNN ............................. CCCGCGTAGCATGTTTGCGCGTGCACCGCCTG 123701 29 100.0 32 NNNNNNNNNN ............................. TCGGGCGTCTGGCCGGTCGCTGAGGCTCTCAA 123762 29 100.0 32 NNNNNNNNNN ............................. CCGCCTGACCGTCTGACCTCCTGACCGCCTGA 123823 29 100.0 32 NNNNNNNNNN ............................. GCGTATCGGTCACAAATGCAGAACCGGCTGGC 123884 29 100.0 32 NNNNNNNNNN ............................. ACGCGCGCGGCGGGTAGTGTAAAGAACAGCGC 123945 29 100.0 32 NNNNNNNNNN ............................. CCCCGACCGTTGGCAATATTACCATCACGCCT 124006 29 100.0 32 NNNNNNNNNN ............................. ATATTTGGACAGTTCGCCCCGGCTGGTAATGT 124067 29 100.0 32 NNNNNNNNNN ............................. TCGCAGCGGAAATCATTGTTGGCAATAATGCC 124128 29 100.0 32 NNNNNNNNNN ............................A CGTGGCCCATGCATTCTTCTCTGGTGACGAAC 124189 29 100.0 32 NNNNNNNNNN ............................. TAACAACAACCTAGCCGCCGTGGTAAATACCA 124250 29 100.0 32 NNNNNNNNNN ............................. CAGCACAAAGCCAGAGACCAGAAGGTTTATGC 124311 29 100.0 32 NNNNNNNNNN ............................. ATCTTGGGTTTGTTGACTTCCGGCATCGTGAT 124372 29 100.0 32 NNNNNNNNNN ............................. AACAGCCCCGCATACCGGCGCATATTGACGCA 124433 29 100.0 32 NNNNNNNNNN ............................. AATTGCCGGGTCTGGCCGCTACCTGCAAACTG 124494 29 100.0 32 NNNNNNNNNN ............................. GCTAAAAATGGGTGATTCCAAAACCAAAACTA 124555 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 24 29 32 GTGTTCCCCGCACACGCGGGGATGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [76,15] Score: 0.18/0.18 # # Final direction: F [1.23,0 Confidence: HIGH] >NC_017098 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 490483 28 100.0 32 NNNNNNNNNN ............................ CGAGACAGGATCGGTCACCCGCTTTTCTGCGA 490543 28 100.0 32 NNNNNNNNNN ............................ TGAGCCATGGTGGTAGTATGCGTCCCGGGATG 490603 28 100.0 32 NNNNNNNNNN ............................ AACCTTTGGTTGCTCCGATATTGCACGAAATT 490663 28 100.0 32 NNNNNNNNNN ............................ CTGTGGTGTCATCTGGCATTATTAACAACAAG 490723 28 100.0 32 NNNNNNNNNN ............................ TTTACTCCTGTATTGTCACGCAAGCGATATAC 490783 28 100.0 32 NNNNNNNNNN ............................ ACTATCCTCAAGTACGAAAGACAAGAATATTG 490843 28 100.0 32 NNNNNNNNNN ............................ GTTGTCGTCGAGGATGCCCCATTTTACTGTAT 490903 28 100.0 32 NNNNNNNNNN ............................ TCCTTAGAGTCTATTCCATAACCAGTCCCTAA 490963 28 100.0 32 NNNNNNNNNN ............................ TGTCTACGACCGCACCGAGCATAAGCAGCTGG 491023 28 100.0 32 NNNNNNNNNN ............................ GTCCGTCAGTCGCTGGCATTCCACGGCATCAA 491083 28 100.0 32 NNNNNNNNNN ............................ TACCGATTCGCTCATGCGCTGCAGCACGAGTT 491143 28 100.0 32 NNNNNNNNNN ............................ TACTTGCAAACTTGGCCGGACAAGCTGTTAAT 491203 28 100.0 32 NNNNNNNNNN ............................ TTGCAGTTCTACCCGCATGTCCTGTAGCTTGG 491263 28 100.0 32 NNNNNNNNNN ............................ GGTATGATTGGTCTATGCCTATGGTGTAGCTA 491323 28 100.0 32 NNNNNNNNNN ............................ TCCTTCAAAAGTTGCCGGGGAGTTACCCCCGG 491383 28 100.0 32 NNNNNNNNNN ............................ ATTCTCGCGCTCGGGCAATGCGGCAAGCAAGG 491443 28 100.0 32 NNNNNNNNNN ............................ AGCAGCTCCGACAGGTCAGCATTCTTTCTGAC 491503 28 100.0 32 NNNNNNNNNN ............................ ATCTAATACAGCTGCATATTGTGACAACGTGT 491563 28 100.0 32 NNNNNNNNNN ............................ TTGCAGAGCTGCTGGTAGAGCGCATGACCGGC 491623 28 100.0 32 NNNNNNNNNN ............................ AGTATTGTGGAGCATCCGCGCCTGATGTAGTC 491683 28 100.0 32 NNNNNNNNNN ............................ TATCACAACCTTATTCCTCCACGACTAGACCC 491743 28 100.0 32 NNNNNNNNNN ............................ TGATACTGGCGCAGAAACATATGAAGTCAATT 491803 28 100.0 32 NNNNNNNNNN ............................ TTAGATGGCTGCTCTGTTTCGTGTACTTTTCC 491863 28 100.0 32 NNNNNNNNNN ............................ TACGTAATCAGGCGGACATCGGCAGCATACTG 491923 28 100.0 32 NNNNNNNNNN ............................ TGTCCTATTTCGGTGAACAACCTCAATCCATT 491983 28 100.0 32 NNNNNNNNNN ............................ TTAATGGTCAATCAGTCCTGGTGTTGACTGAA 492043 28 100.0 32 NNNNNNNNNN ............................ ATCAGGGCGCGCTTCAAATTCGCGATGTCGGA 492103 28 100.0 32 NNNNNNNNNN ............................ ATAATGGCCCTCCCTGTCTTTCCCGCTACTGC 492163 28 100.0 32 NNNNNNNNNN ............................ TCCTGCAACAGCTACCCGCAATTCACCCGTCA 492223 28 100.0 32 NNNNNNNNNN ............................ TCGTCATTCCATAAGAGCTCCCAAGTTGTGCC 492283 28 100.0 32 NNNNNNNNNN ............................ CCGAGGGCATGAGCGTGACCGTGCAGGTAACA 492343 28 100.0 32 NNNNNNNNNN ............................ GATATGCCCGAGGACTATCCGTACACCGTGAC 492403 28 100.0 32 NNNNNNNNNN ............................ GTAAAGCCATATTTTAAACATGATTCAAAGGT 492463 28 100.0 32 NNNNNNNNNN ............................ ATCATGATCATGAATGCATCTTCCGAGTCCTC 492523 28 100.0 32 NNNNNNNNNN ............................ CCTGTCAGTTCGTTCTGCCTGATCCATTCATC 492583 28 100.0 32 NNNNNNNNNN ............................ AGTTTCGGGTCAACCTCATCTGGTATGTGCAT 492643 28 100.0 32 NNNNNNNNNN ............................ TTCCACCAATATACACCCGGCCGACACTTTTG 492703 28 100.0 32 NNNNNNNNNN ............................ TTCCACCAATATACACCCGGCCGACACTTTTG 492763 28 100.0 32 NNNNNNNNNN ............................ AAAACCGGGTGGAACGGTTACAGCCAGTATTG 492823 28 100.0 32 NNNNNNNNNN ............................ ATCATCGCCTTTAATCAAAGCGAATTTAGAAT 492883 28 100.0 32 NNNNNNNNNN ............................ TCGGGAAACTCGTTCTGGATTTGCCGCCTGAG 492943 28 100.0 32 NNNNNNNNNN ............................ TAAGAATTACTTCATCCGCAAAGTTAGGATTC 493003 28 100.0 32 NNNNNNNNNN ............................ GCAAGCGGATTTCATGCAAGCTATAAATCCGG 493063 28 100.0 32 NNNNNNNNNN ............................ TGATGGTCGCCGTAGTGGAACAGACCCTGTTC 493123 28 100.0 32 NNNNNNNNNN ............................ TGTATCTCTGTGATCATCATTGCTCTGCCCCT 493183 28 100.0 32 NNNNNNNNNN ............................ TGTCCTATTTCGGTGAACAACCTCAATCCATT 493243 28 100.0 32 NNNNNNNNNN ............................ TGGGTGTTGGGGGCGTCGACCTCGCTGGTTTC 493303 28 100.0 32 NNNNNNNNNN ............................ TTGGATTGTTCGCCATAGCCTCGCGCATCCGA 493363 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 49 28 32 GTTACCTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [68.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [107,369] Score: 0.18/0.18 # # Final direction: F [1.01,0.18 Confidence: HIGH] >NC_017104 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 123524 29 100.0 32 TTCACGAAGA ............................. CGGTCGATATTAAGGCGGAAGAGGGGGAGGCC 123585 29 100.0 32 GGGGGAGGCC ............................. CCGAGGCAGATAGAGCTGTGGAATGTGTCATG 123646 29 100.0 32 ATGTGTCATG ............................. CACGCTCTCCGTGCCTCAAATCCATTGTGAGA 123707 29 100.0 32 CATTGTGAGA ............................. ATAGCGGCACCTGCGCCAAACCCCATTTTCAG 123768 29 100.0 32 CCATTTTCAG ............................. TTCAGCGTTTGGCCATCAGCAAAAACTACCGT 123829 29 100.0 32 AAACTACCGT ............................. CGGGGCGGCTGTTGGTAATGCAGACAATCCGT 123890 29 100.0 32 GACAATCCGT ............................. TCGCCCACGGCCTGCCAAGACTTGCTCACTTC 123951 29 100.0 32 TGCTCACTTC ............................. GCGGTGGATAGGCCTTCCATATCTGGCAGGTA 124012 29 100.0 32 CTGGCAGGTA ............................. CCCGCGTAGCATGTTTGCGCGTGCACCGCCTG 124073 29 100.0 32 GCACCGCCTG ............................. TCGGGCGTCTGGCCGGTCGCTGAGGCTCTCAA 124134 29 100.0 32 AGGCTCTCAA ............................. CCGCCTGACCGTCTGACCTCCTGACCGCCTGA 124195 29 100.0 32 GACCGCCTGA ............................. GCGTATCGGTCACAAATGCAGAACCGGCTGGC 124256 29 100.0 32 ACCGGCTGGC ............................. ACGCGCGCGGCGGGTAGTGTAAAGAACAGCGC 124317 29 100.0 32 AGAACAGCGC ............................. CCCCGACCGTTGGCAATATTACCATCACGCCT 124378 29 100.0 32 CATCACGCCT ............................. ATATTTGGACAGTTCGCCCCGGCTGGTAATGT 124439 29 100.0 32 CTGGTAATGT ............................. TCGCAGCGGAAATCATTGTTGGCAATAATGCC 124500 29 96.6 32 CAATAATGCC ............................A CGTGGCCCATGCATTCTTCTCTGGTGACGAAC 124561 29 100.0 32 GGTGACGAAC ............................. TAACAACAACCTAGCCGCCGTGGTAAATACCA 124622 29 100.0 32 GTAAATACCA ............................. CAGCACAAAGCCAGAGACCAGAAGGTTTATGC 124683 29 100.0 32 AGGTTTATGC ............................. ATCTTGGGTTTGTTGACTTCCGGCATCGTGAT 124744 29 100.0 32 GCATCGTGAT ............................. AACAGCCCCGCATACCGGCGCATATTGACGCA 124805 29 100.0 32 TATTGACGCA ............................. AATTGCCGGGTCTGGCCGCTACCTGCAAACTG 124866 29 100.0 32 CTGCAAACTG ............................. GCTAAAAATGGGTGATTCCAAAACCAAAACTA 124927 29 100.0 ACCAAAACTA ............................. ACGCCTAACA ========== ====== ====== ====== ========== ============================= 24 29 32 GTGTTCCCCGCACACGCGGGGATGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [76,15] Score: 0.18/0.18 # # Final direction: F [1.23,0 Confidence: HIGH] >NC_017154 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1788306 28 100.0 32 ATTATCTTAC ............................ ATGTTCGACGATTTATTTTATTTGTATTTCAG 1788366 28 100.0 32 TGTATTTCAG ............................ ATTTATTAAAGATGCTGACAAAAAGAACTTAA 1788426 28 100.0 AAGAACTTAA ............................ GTCAACGCTTCACTCCCTGCGCGGGGTATAAC ========== ====== ====== ====== ========== ============================ 3 28 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [496,96] Score: 0.18/0.18 # # Final direction: F [1.69,0 Confidence: HIGH] >NC_017130 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 123144 29 100.0 32 NNNNNNNNNN ............................. CGGTCGATATTAAGGCGGAAGAGGGGGAGGCC 123205 29 100.0 32 NNNNNNNNNN ............................. CCGAGGCAGATAGAGCTGTGGAATGTGTCATG 123266 29 100.0 32 NNNNNNNNNN ............................. CACGCTCTCCGTGCCTCAAATCCATTGTGAGA 123327 29 100.0 32 NNNNNNNNNN ............................. ATAGCGGCACCTGCGCCAAACCCCATTTTCAG 123388 29 100.0 32 NNNNNNNNNN ............................. TTCAGCGTTTGGCCATCAGCAAAAACTACCGT 123449 29 100.0 32 NNNNNNNNNN ............................. CGGGGCGGCTGTTGGTAATGCAGACAATCCGT 123510 29 100.0 32 NNNNNNNNNN ............................. TCGCCCACGGCCTGCCAAGACTTGCTCACTTC 123571 29 100.0 32 NNNNNNNNNN ............................. GCGGTGGATAGGCCTTCCATATCTGGCAGGTA 123632 29 100.0 32 NNNNNNNNNN ............................. CCCGCGTAGCATGTTTGCGCGTGCACCGCCTG 123693 29 100.0 32 NNNNNNNNNN ............................. TCGGGCGTCTGGCCGGTCGCTGAGGCTCTCAA 123754 29 100.0 32 NNNNNNNNNN ............................. CCGCCTGACCGTCTGACCTCCTGACCGCCTGA 123815 29 100.0 32 NNNNNNNNNN ............................. GCGTATCGGTCACAAATGCAGAACCGGCTGGC 123876 29 100.0 32 NNNNNNNNNN ............................. ACGCGCGCGGCGGGTAGTGTAAAGAACAGCGC 123937 29 100.0 32 NNNNNNNNNN ............................. CCCCGACCGTTGGCAATATTACCATCACGCCT 123998 29 100.0 32 NNNNNNNNNN ............................. ATATTTGGACAGTTCGCCCCGGCTGGTAATGT 124059 29 100.0 32 NNNNNNNNNN ............................. TCGCAGCGGAAATCATTGTTGGCAATAATGCC 124120 29 100.0 32 NNNNNNNNNN ............................A CGTGGCCCATGCATTCTTCTCTGGTGACGAAC 124181 29 100.0 32 NNNNNNNNNN ............................. TAACAACAACCTAGCCGCCGTGGTAAATACCA 124242 29 100.0 32 NNNNNNNNNN ............................. CAGCACAAAGCCAGAGACCAGAAGGTTTATGC 124303 29 100.0 32 NNNNNNNNNN ............................. ATCTTGGGTTTGTTGACTTCCGGCATCGTGAT 124364 29 100.0 32 NNNNNNNNNN ............................. AACAGCCCCGCATACCGGCGCATATTGACGCA 124425 29 100.0 32 NNNNNNNNNN ............................. AATTGCCGGGTCTGGCCGCTACCTGCAAACTG 124486 29 100.0 32 NNNNNNNNNN ............................. GCTAAAAATGGGTGATTCCAAAACCAAAACTA 124547 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 24 29 32 GTGTTCCCCGCACACGCGGGGATGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [76,15] Score: 0.18/0.18 # # Final direction: F [1.23,0 Confidence: HIGH] >NC_017117 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 123152 29 100.0 32 NNNNNNNNNN ............................. CGGTCGATATTAAGGCGGAAGAGGGGGAGGCC 123213 29 100.0 32 NNNNNNNNNN ............................. CCGAGGCAGATAGAGCTGTGGAATGTGTCATG 123274 29 100.0 32 NNNNNNNNNN ............................. CACGCTCTCCGTGCCTCAAATCCATTGTGAGA 123335 29 100.0 32 NNNNNNNNNN ............................. ATAGCGGCACCTGCGCCAAACCCCATTTTCAG 123396 29 100.0 32 NNNNNNNNNN ............................. TTCAGCGTTTGGCCATCAGCAAAAACTACCGT 123457 29 100.0 32 NNNNNNNNNN ............................. CGGGGCGGCTGTTGGTAATGCAGACAATCCGT 123518 29 100.0 32 NNNNNNNNNN ............................. TCGCCCACGGCCTGCCAAGACTTGCTCACTTC 123579 29 100.0 32 NNNNNNNNNN ............................. GCGGTGGATAGGCCTTCCATATCTGGCAGGTA 123640 29 100.0 32 NNNNNNNNNN ............................. CCCGCGTAGCATGTTTGCGCGTGCACCGCCTG 123701 29 100.0 32 NNNNNNNNNN ............................. TCGGGCGTCTGGCCGGTCGCTGAGGCTCTCAA 123762 29 100.0 32 NNNNNNNNNN ............................. CCGCCTGACCGTCTGACCTCCTGACCGCCTGA 123823 29 100.0 32 NNNNNNNNNN ............................. GCGTATCGGTCACAAATGCAGAACCGGCTGGC 123884 29 100.0 32 NNNNNNNNNN ............................. ACGCGCGCGGCGGGTAGTGTAAAGAACAGCGC 123945 29 100.0 32 NNNNNNNNNN ............................. CCCCGACCGTTGGCAATATTACCATCACGCCT 124006 29 100.0 32 NNNNNNNNNN ............................. ATATTTGGACAGTTCGCCCCGGCTGGTAATGT 124067 29 100.0 32 NNNNNNNNNN ............................. TCGCAGCGGAAATCATTGTTGGCAATAATGCC 124128 29 100.0 32 NNNNNNNNNN ............................A CGTGGCCCATGCATTCTTCTCTGGTGACGAAC 124189 29 100.0 32 NNNNNNNNNN ............................. TAACAACAACCTAGCCGCCGTGGTAAATACCA 124250 29 100.0 32 NNNNNNNNNN ............................. CAGCACAAAGCCAGAGACCAGAAGGTTTATGC 124311 29 100.0 32 NNNNNNNNNN ............................. ATCTTGGGTTTGTTGACTTCCGGCATCGTGAT 124372 29 100.0 32 NNNNNNNNNN ............................. AACAGCCCCGCATACCGGCGCATATTGACGCA 124433 29 100.0 32 NNNNNNNNNN ............................. AATTGCCGGGTCTGGCCGCTACCTGCAAACTG 124494 29 100.0 32 NNNNNNNNNN ............................. GCTAAAAATGGGTGATTCCAAAACCAAAACTA 124555 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 24 29 32 GTGTTCCCCGCACACGCGGGGATGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [76,15] Score: 0.18/0.18 # # Final direction: F [1.23,0 Confidence: HIGH] >NC_017134 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 123168 29 100.0 32 NNNNNNNNNN ............................. CGGTCGATATTAAGGCGGAAGAGGGGGAGGCC 123229 29 100.0 32 NNNNNNNNNN ............................. CCGAGGCAGATAGAGCTGTGGAATGTGTCATG 123290 29 100.0 32 NNNNNNNNNN ............................. CACGCTCTCCGTGCCTCAAATCCATTGTGAGA 123351 29 100.0 32 NNNNNNNNNN ............................. ATAGCGGCACCTGCGCCAAACCCCATTTTCAG 123412 29 100.0 32 NNNNNNNNNN ............................. TTCAGCGTTTGGCCATCAGCAAAAACTACCGT 123473 29 100.0 32 NNNNNNNNNN ............................. CGGGGCGGCTGTTGGTAATGCAGACAATCCGT 123534 29 100.0 32 NNNNNNNNNN ............................. TCGCCCACGGCCTGCCAAGACTTGCTCACTTC 123595 29 100.0 32 NNNNNNNNNN ............................. GCGGTGGATAGGCCTTCCATATCTGGCAGGTA 123656 29 100.0 32 NNNNNNNNNN ............................. CCCGCGTAGCATGTTTGCGCGTGCACCGCCTG 123717 29 100.0 32 NNNNNNNNNN ............................. TCGGGCGTCTGGCCGGTCGCTGAGGCTCTCAA 123778 29 100.0 32 NNNNNNNNNN ............................. CCGCCTGACCGTCTGACCTCCTGACCGCCTGA 123839 29 100.0 32 NNNNNNNNNN ............................. GCGTATCGGTCACAAATGCAGAACCGGCTGGC 123900 29 100.0 32 NNNNNNNNNN ............................. ACGCGCGCGGCGGGTAGTGTAAAGAACAGCGC 123961 29 100.0 32 NNNNNNNNNN ............................. CCCCGACCGTTGGCAATATTACCATCACGCCT 124022 29 100.0 32 NNNNNNNNNN ............................. ATATTTGGACAGTTCGCCCCGGCTGGTAATGT 124083 29 100.0 32 NNNNNNNNNN ............................. TCGCAGCGGAAATCATTGTTGGCAATAATGCC 124144 29 100.0 32 NNNNNNNNNN ............................A CGTGGCCCATGCATTCTTCTCTGGTGACGAAC 124205 29 100.0 32 NNNNNNNNNN ............................. TAACAACAACCTAGCCGCCGTGGTAAATACCA 124266 29 100.0 32 NNNNNNNNNN ............................. CAGCACAAAGCCAGAGACCAGAAGGTTTATGC 124327 29 100.0 32 NNNNNNNNNN ............................. ATCTTGGGTTTGTTGACTTCCGGCATCGTGAT 124388 29 100.0 32 NNNNNNNNNN ............................. AACAGCCCCGCATACCGGCGCATATTGACGCA 124449 29 100.0 32 NNNNNNNNNN ............................. AATTGCCGGGTCTGGCCGCTACCTGCAAACTG 124510 29 100.0 32 NNNNNNNNNN ............................. GCTAAAAATGGGTGATTCCAAAACCAAAACTA 124571 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 24 29 32 GTGTTCCCCGCACACGCGGGGATGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [76,15] Score: 0.18/0.18 # # Final direction: F [1.23,0 Confidence: HIGH] >NC_017136 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 123136 29 100.0 32 NNNNNNNNNN ............................. CGGTCGATATTAAGGCGGAAGAGGGGGAGGCC 123197 29 100.0 32 NNNNNNNNNN ............................. CCGAGGCAGATAGAGCTGTGGAATGTGTCATG 123258 29 100.0 32 NNNNNNNNNN ............................. CACGCTCTCCGTGCCTCAAATCCATTGTGAGA 123319 29 100.0 32 NNNNNNNNNN ............................. ATAGCGGCACCTGCGCCAAACCCCATTTTCAG 123380 29 100.0 32 NNNNNNNNNN ............................. TTCAGCGTTTGGCCATCAGCAAAAACTACCGT 123441 29 100.0 32 NNNNNNNNNN ............................. CGGGGCGGCTGTTGGTAATGCAGACAATCCGT 123502 29 100.0 32 NNNNNNNNNN ............................. TCGCCCACGGCCTGCCAAGACTTGCTCACTTC 123563 29 100.0 32 NNNNNNNNNN ............................. GCGGTGGATAGGCCTTCCATATCTGGCAGGTA 123624 29 100.0 32 NNNNNNNNNN ............................. CCCGCGTAGCATGTTTGCGCGTGCACCGCCTG 123685 29 100.0 32 NNNNNNNNNN ............................. TCGGGCGTCTGGCCGGTCGCTGAGGCTCTCAA 123746 29 100.0 32 NNNNNNNNNN ............................. CCGCCTGACCGTCTGACCTCCTGACCGCCTGA 123807 29 100.0 32 NNNNNNNNNN ............................. GCGTATCGGTCACAAATGCAGAACCGGCTGGC 123868 29 100.0 32 NNNNNNNNNN ............................. ACGCGCGCGGCGGGTAGTGTAAAGAACAGCGC 123929 29 100.0 32 NNNNNNNNNN ............................. CCCCGACCGTTGGCAATATTACCATCACGCCT 123990 29 100.0 32 NNNNNNNNNN ............................. ATATTTGGACAGTTCGCCCCGGCTGGTAATGT 124051 29 100.0 32 NNNNNNNNNN ............................. TCGCAGCGGAAATCATTGTTGGCAATAATGCC 124112 29 100.0 32 NNNNNNNNNN ............................A CGTGGCCCATGCATTCTTCTCTGGTGACGAAC 124173 29 100.0 32 NNNNNNNNNN ............................. TAACAACAACCTAGCCGCCGTGGTAAATACCA 124234 29 100.0 32 NNNNNNNNNN ............................. CAGCACAAAGCCAGAGACCAGAAGGTTTATGC 124295 29 100.0 32 NNNNNNNNNN ............................. ATCTTGGGTTTGTTGACTTCCGGCATCGTGAT 124356 29 100.0 32 NNNNNNNNNN ............................. AACAGCCCCGCATACCGGCGCATATTGACGCA 124417 29 100.0 32 NNNNNNNNNN ............................. AATTGCCGGGTCTGGCCGCTACCTGCAAACTG 124478 29 100.0 32 NNNNNNNNNN ............................. GCTAAAAATGGGTGATTCCAAAACCAAAACTA 124539 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 24 29 32 GTGTTCCCCGCACACGCGGGGATGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [76,15] Score: 0.18/0.18 # # Final direction: F [1.23,0 Confidence: HIGH] >NC_017160 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2839776 28 100.0 32 NNNNNNNNNN ............................ GTCAGGAATTTATTCAACGTGTTGCAGACTCA 2839836 28 100.0 32 NNNNNNNNNN ............................ CTGATGGGTAACTTTAATCCCAAATTCTTTTT 2839896 28 100.0 32 NNNNNNNNNN ............................ TGTTAAATCGTCGCCTAAATTTGTTTGACCGA 2839956 28 100.0 32 NNNNNNNNNN ............................ GTGGAATGGCTATTGCTATCGCTCGAGAATAT 2840016 28 100.0 32 NNNNNNNNNN ............................ ATCTGCGCCAAAGAAAATGCCATTCAGATAAT 2840076 28 100.0 32 NNNNNNNNNN .........T.................. AACTACTAGAAGCTTGCCCATCTTACCTTTTC 2840136 28 100.0 32 NNNNNNNNNN ............................ ATCATGAAAGACATTGTTCGCCAGTCCCCTGA 2840196 28 100.0 1 NNNNNNNNNN ...................ATAATC... NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 8 28 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [339,361] Score: 0/0.18 # # Final direction: F [1.92,0 Confidence: HIGH] >NC_017160 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2876594 28 100.0 33 TTATCTTACT ............................ CTGATACAATCATCCTATTTGTCCTATCCAGAA 2876655 28 100.0 32 CTATCCAGAA ............................ GACAAGAACCGAATCTTTCGCCGTGCCGTAAA 2876715 28 100.0 33 GTGCCGTAAA ............................ CCGAAATCATCAGATGTAATTAAGATTTTTGCT 2876776 28 100.0 GATTTTTGCT ............................ AGACTGATGCAAGATGGCGGTATGCGTACAGA ========== ====== ====== ====== ========== ============================ 4 28 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [362,65] Score: 0.18/0.18 # # Final direction: F [1.69,0 Confidence: HIGH] >NC_017143 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 123152 29 100.0 32 NNNNNNNNNN ............................. CGGTCGATATTAAGGCGGAAGAGGGGGAGGCC 123213 29 100.0 32 NNNNNNNNNN ............................. CCGAGGCAGATAGAGCTGTGGAATGTGTCATG 123274 29 100.0 32 NNNNNNNNNN ............................. CACGCTCTCCGTGCCTCAAATCCATTGTGAGA 123335 29 100.0 32 NNNNNNNNNN ............................. ATAGCGGCACCTGCGCCAAACCCCATTTTCAG 123396 29 100.0 32 NNNNNNNNNN ............................. TTCAGCGTTTGGCCATCAGCAAAAACTACCGT 123457 29 100.0 32 NNNNNNNNNN ............................. CGGGGCGGCTGTTGGTAATGCAGACAATCCGT 123518 29 100.0 32 NNNNNNNNNN ............................. TCGCCCACGGCCTGCCAAGACTTGCTCACTTC 123579 29 100.0 32 NNNNNNNNNN ............................. GCGGTGGATAGGCCTTCCATATCTGGCAGGTA 123640 29 100.0 32 NNNNNNNNNN ............................. CCCGCGTAGCATGTTTGCGCGTGCACCGCCTG 123701 29 100.0 32 NNNNNNNNNN ............................. TCGGGCGTCTGGCCGGTCGCTGAGGCTCTCAA 123762 29 100.0 32 NNNNNNNNNN ............................. CCGCCTGACCGTCTGACCTCCTGACCGCCTGA 123823 29 100.0 32 NNNNNNNNNN ............................. GCGTATCGGTCACAAATGCAGAACCGGCTGGC 123884 29 100.0 32 NNNNNNNNNN ............................. ACGCGCGCGGCGGGTAGTGTAAAGAACAGCGC 123945 29 100.0 32 NNNNNNNNNN ............................. CCCCGACCGTTGGCAATATTACCATCACGCCT 124006 29 100.0 32 NNNNNNNNNN ............................. ATATTTGGACAGTTCGCCCCGGCTGGTAATGT 124067 29 100.0 32 NNNNNNNNNN ............................. TCGCAGCGGAAATCATTGTTGGCAATAATGCC 124128 29 100.0 32 NNNNNNNNNN ............................A CGTGGCCCATGCATTCTTCTCTGGTGACGAAC 124189 29 100.0 32 NNNNNNNNNN ............................. TAACAACAACCTAGCCGCCGTGGTAAATACCA 124250 29 100.0 32 NNNNNNNNNN ............................. CAGCACAAAGCCAGAGACCAGAAGGTTTATGC 124311 29 100.0 32 NNNNNNNNNN ............................. ATCTTGGGTTTGTTGACTTCCGGCATCGTGAT 124372 29 100.0 32 NNNNNNNNNN ............................. AACAGCCCCGCATACCGGCGCATATTGACGCA 124433 29 100.0 32 NNNNNNNNNN ............................. AATTGCCGGGTCTGGCCGCTACCTGCAAACTG 124494 29 100.0 32 NNNNNNNNNN ............................. GCTAAAAATGGGTGATTCCAAAACCAAAACTA 124555 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 24 29 32 GTGTTCCCCGCACACGCGGGGATGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [76,15] Score: 0.18/0.18 # # Final direction: F [1.23,0 Confidence: HIGH] >NC_017154 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2768809 28 100.0 32 NNNNNNNNNN ...GATTAT................... TCAGGGGACTGGCGAACAATGTCTTTCATGAT 2768869 28 100.0 32 NNNNNNNNNN ............................ GAAAAGGTAAGATGGGCAAGCTTCTAGTAGTT 2768929 28 100.0 32 NNNNNNNNNN ..................A......... ATTATCTGAATGGCATTTTCTTTGGCGCAGAT 2768989 28 100.0 32 NNNNNNNNNN ............................ TCGCCATTCCGTGAACCTGAGCGCGTTCGCGA 2769049 28 100.0 32 NNNNNNNNNN ............................ ATATTCTCGAGCGATAGCAATAGCCATTCCAC 2769109 28 100.0 32 NNNNNNNNNN ............................ TCGGTCAAACAAATTTAGGCGACGATTTAACA 2769169 28 100.0 32 NNNNNNNNNN ............................ AAAAAGAATTTGGGATTAAAGTTACCCATCAG 2769229 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 8 28 32 TTTCTAAGCTGCCTGTGCGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [361,339] Score: 0/0.18 # # Final direction: R [0,1.42 Confidence: HIGH] >NC_017154 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3114449 28 100.0 33 GCATCAGTCT ............................ AGCAAAAATCTTAATTACATCTGATGATTTCGG 3114510 28 100.0 32 ATGATTTCGG ............................ TTTACGGCACGGCGAAAGATTCGGTTCTTGTC 3114570 28 100.0 33 GGTTCTTGTC ............................ TTCTGGATAGGACAAATAGGATGATTGTATCAG 3114631 28 100.0 ATTGTATCAG ............................ AGTAAGATAA ========== ====== ====== ====== ========== ============================ 4 28 32 TTTCTAAGCTGCCTGTGCGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [48.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [65,362] Score: 0.18/0.18 # # Final direction: R [0,1.19 Confidence: HIGH] >NC_017168 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2992631 28 100.0 33 NNNNNNNNNN ............................ CCGCAGCTATCACGCCAGAGATTCAGGCATTGA 2992692 28 100.0 32 NNNNNNNNNN ............................ CTGATGGGTAACTTTAATCCCAAATTCTTTTT 2992752 28 100.0 32 NNNNNNNNNN ............................ TGTTAAATCGTCGCCTAAATTTGTTTGACCGA 2992812 28 100.0 32 NNNNNNNNNN ............................ GTGGAATGGCTATTGCTATCGCTCGAGAATAT 2992872 28 100.0 32 NNNNNNNNNN ............................ TCGCGAACGCGCTCAGGTTCACGGAATGGCGA 2992932 28 100.0 32 NNNNNNNNNN ............................ ATCTGCGCCAAAGAAAATGCCATTCAGATAAT 2992992 28 100.0 32 NNNNNNNNNN .........T.................. AACTACTAGAAGCTTGCCCATCTTACCTTTTC 2993052 28 100.0 32 NNNNNNNNNN ............................ ATCATGAAAGACATTGTTCGCCAGTCCCCTGA 2993112 28 100.0 1 NNNNNNNNNN ...................ATAATC... NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 9 28 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [339,361] Score: 0/0.18 # # Final direction: F [1.92,0 Confidence: HIGH] >NC_017161 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1122535 30 100.0 36 NNNNNNNNNN .A.AAGGA...................... GTCCCCGGTGGACCAAACGCCTTTTTTACACGCATC 1122601 30 100.0 37 NNNNNNNNNN .............................. TTTATGTCTGCTATTTTCTCCCTTGTTGTGGGTGCCC 1122668 30 100.0 37 NNNNNNNNNN .............................. CGCCTCCAATAAAACAGGGTATAAATATGGGTCTCCG 1122735 30 100.0 37 NNNNNNNNNN .............................. ATTTAACATAGGCATAAGCGAGTAAGTGTTGATATAA 1122802 30 100.0 37 NNNNNNNNNN .............................. TTTATGTCTGCTATTTTCTCCCTTGTTGTGGGTGCCC 1122869 30 100.0 37 NNNNNNNNNN .............................. CGCCTCCAATAAAACAGGGTATAAATATGGGTCTCCG 1122936 30 100.0 37 NNNNNNNNNN .............................. ATTTAACATAGGCATAAGCGAGTAAGTGTTGATATAA 1123003 30 100.0 36 NNNNNNNNNN .............................. TGAGATATGTAGAGCAGCTACAGGAGGCAAAGTTCA 1123069 30 100.0 36 NNNNNNNNNN .............................. ACACCTTCCAAGAAAGGCAGTCAGCGCCTTTGAGGT 1123135 30 100.0 37 NNNNNNNNNN .............................. GTGAAGCGCCGCCAAATGAATAGCGAGCCACATTTAA 1123202 30 100.0 37 NNNNNNNNNN .............................. GTTCTTGGTGGAGAGCGGGATGATAACGGGAACTGGA 1123269 30 100.0 38 NNNNNNNNNN .............................. GCATGAGCTGCAAGGATTTTCCAGCGAGCCACATTTAG 1123337 30 100.0 36 NNNNNNNNNN .............................. AGAGTATGTTTAGCTTTTCTTGGGTAGCCTTGACGA 1123403 30 100.0 37 NNNNNNNNNN .............................. TTCTTTCTCGTGTTCTTTCTTATTTTCCTGATATCGC 1123470 30 100.0 36 NNNNNNNNNN .............................. GTGCTCGGAAGACAAAGGCTCGTACAACCAAACAGC 1123536 30 100.0 36 NNNNNNNNNN .............................. TGTTCAAAGCTTTGAGTATCAAGTTCTAATACTTTC 1123602 30 100.0 36 NNNNNNNNNN .............................. AATACACTTTTCTTTGAGGCAGGGGGGGGATATACA 1123668 30 100.0 38 NNNNNNNNNN .............................. TCCTGCAACACTGTCATTTGCATCCAGCGCAATCCCAG 1123736 30 100.0 38 NNNNNNNNNN .............................. TCTTCACATTTTCAAAGAGTTTGGAATACCTACAGGGA 1123804 30 100.0 40 NNNNNNNNNN .............................. ATACACACAGAAGAGGTAATTTTAAAGACTTTGCAAGCCT 1123874 30 100.0 38 NNNNNNNNNN .............................. TCTTCACATTTTCAAAGAGTTTGGAATACCTACAGGGA 1123942 30 100.0 40 NNNNNNNNNN .............................. ATACACACAGAAGAGGTAATTTTAAAGACTTTGCAAGCCT 1124012 30 100.0 37 NNNNNNNNNN .............................. CAAATCCTTGAGAGGCAACCAAAAGAGATGTGGAACA 1124079 30 100.0 37 NNNNNNNNNN .............................. ACTCCTTATTGATCATAGCGTTTTTGATGATATATGC 1124146 30 100.0 37 NNNNNNNNNN .............................. CATAGGCATTGACGAAGGGGATATCTACTTTACCGCC 1124213 30 100.0 37 NNNNNNNNNN .............................. ATGAATATCTTTTTTTGTTTTTCGTAGGCGTGGTAGA 1124280 30 100.0 37 NNNNNNNNNN .............................. ACAGAAGAAAACAGCTCGCCTTCTATCCAAACTTTCC 1124347 30 100.0 37 NNNNNNNNNN .............................. GGGTATACTTGAGAGAGAAATTTCAGGACCAAAAATC 1124414 30 100.0 37 NNNNNNNNNN .............................. CCCGGGGGTTTAAAGGGGACCTTCACTTATATATACA 1124481 30 100.0 37 NNNNNNNNNN .............................. TATTCCACCCTTTTCCCTTTTGCCCTGCTGTTCTTCA 1124548 30 100.0 37 NNNNNNNNNN .............................. AAGAATTATGCATTTTTCCAGTTTTTGGAATTTTGCA 1124615 30 100.0 37 NNNNNNNNNN .............................. GTTCTTGGTGGAGAGCGGGATGATAACGGGAACTGGA 1124682 30 100.0 36 NNNNNNNNNN .............................. TTCCGGAAGCAAGCGAGGAACTTATTGACGGATTAA 1124748 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 34 30 37 GTTTCAATCCCTTATAGGCACCTAATAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.60,-2.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [76,163] Score: 0.18/0.18 # # Final direction: R [0,5.46 Confidence: HIGH] >NC_017167 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3039512 36 100.0 40 GAGAATGAGA .................................... GCCGAGAATGGCGCGCGTGTGATGAAGGCCGTCTTCACGG 3039588 36 100.0 37 GTCTTCACGG .................................... GCTCCTTCGCATCCAAAGACAAGATTGATGGCTGGCA 3039661 36 100.0 37 ATGGCTGGCA .................................... GACCCGACAATGCGAAATGTGTGCGATGGTATGGCAC 3039734 36 100.0 37 GGTATGGCAC .................................... GGCCAAGATCGTGCACAAGAGCGGCAAACCGTATCAT 3039807 36 100.0 38 ACCGTATCAT .................................... GAATGTGCACGTCGCGCTCGTCGTCACCAGCGAGTTCG 3039881 36 100.0 36 AGCGAGTTCG .................................... GGGCGCCGCGGCCATGGGGCTTGCCATGGGCTCGAA 3039953 36 100.0 35 TGGGCTCGAA .................................... GACATCGGATGCAAGCAGGCCCTCAAGGCCGCCGT 3040024 36 100.0 37 AGGCCGCCGT .................................... GAGATAGAAGGCCTTCGAGTTCCCCCCCCTGGATGTC 3040097 36 100.0 37 CCTGGATGTC .................................... GACATAGAGTGCTGGACGATCTGGATGATGCACTTGA 3040170 36 100.0 36 ATGCACTTGA .................................... CTCCTCCCCGGTGGCCGCGAAAACCGCACGACAGCC 3040242 36 100.0 38 CACGACAGCC .................................... CAGGCATTCGTGCCATAACAGTACCCGTTCCTCACGCA 3040316 36 97.2 37 TCCTCACGCA .............C...................... CTACGGATCGTCCTGCTCCGGCATCACACCGTACTTG 3040389 36 100.0 40 ACCGTACTTG .................................... CGGGAATTGCTCCAGGAGAGCCCGGATCTCCTGTGCGCAG 3040465 36 100.0 38 CTGTGCGCAG .................................... CCGAGTGATGGGGGCGAAGTCGAACTCTCCGTTTTCCA 3040539 36 100.0 CCGTTTTCCA .................................... CAGTACCTCCT ========== ====== ====== ====== ========== ==================================== 15 36 37 GTTGATCCGCCGAGATCGTCGGCGGCCCCATTGAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-14.00,-13.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [522,294] Score: 0/0.18 # # Final direction: F [0.78,0.37 Confidence: MEDIUM] >NC_017167 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2812009 37 100.0 35 GAAGCGTAGC ..................................... GATAGCCCGGATGAGGCCCTGATGTGGCCCGCCAA 2812081 37 100.0 36 GGCCCGCCAA ..................................... CACTTCCGCAAACCGCGTCTGCTCATAGCTCGTGTC 2812154 37 100.0 37 AGCTCGTGTC ..................................... CCCACAAGCAAATAAATCTTGCAATTTCATTTCGAGA 2812228 37 100.0 35 CATTTCGAGA ..................................... TGGATCATGCCCCAGGAAGTCCCGCAGACAATTCC 2812300 37 100.0 37 AGACAATTCC ..................................... ACCCACTTTGATGTGATGTCGTCACAACTGACTGTGC 2812374 37 100.0 38 CTGACTGTGC ..................................... CACATGTTTGTGTAGACAGAATACTGGTCGGTATTGAT 2812449 37 97.3 34 CGGTATTGAT ........................C............ GCAATCTGGGCGGTGTGAAAGTACCGCGTCCTGG 2812520 37 100.0 CGCGTCCTGG ..................................... GAATTCGAGCGGTGGAACAACGGCCCAGCGAATTAC ========== ====== ====== ====== ========== ===================================== 8 37 36 GTTGTTCCGCCGAGATCGTCGGCGGCCCCATTGAAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-14.00,-13.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [33.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [505,83] Score: 0.18/0.18 # # Final direction: F [0.96,0.64 Confidence: LOW] >NC_017167 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 38229 37 100.0 36 NNNNNNNNNN ..................................... GCGAGGACTCAAGGCGAAGGAGGTGGCGGAGGCCAT 38302 37 100.0 38 NNNNNNNNNN ..................................... CTCTGCGTTCTTGATAGGGTCATCGATAAGGAGAAGAC 38377 37 100.0 35 NNNNNNNNNN ..................................... ACAAATCCCATCAACAAAACCAGCAACGATTATAT 38449 37 100.0 36 NNNNNNNNNN ..................................... CCCAATGGTTCCTACTCAGTTAGCTGAACACTGGAA 38522 37 100.0 35 NNNNNNNNNN ..................................... ACCCTCACCGACTGATTTCGAGATGTTCAATAATG 38594 37 100.0 39 NNNNNNNNNN ..................................... GGCGTAAAACCGGCCTCTTCCCATTCACGGGCGGCGCGG 38670 37 100.0 35 NNNNNNNNNN ..................................... TTATCACCCACGCTCACCCTGTCCGTGTCGCTCTC 38742 37 100.0 36 NNNNNNNNNN ..................................... TACACGCTATACGCTACGCCGGATCGCTTGCGGCTC 38815 37 100.0 35 NNNNNNNNNN ..................................... AAGACGCGGCGGCTCCACGGCATCCGCGACATTGC 38887 37 100.0 37 NNNNNNNNNN ..................................... TCGTATGAGGTGAGACAGCATGGCGAGCGTGCAACAA 38961 37 100.0 37 NNNNNNNNNN ..................................... ACTAACCTAAACTGATTCGCTTGACGATTCCCGTTTG 39035 37 100.0 36 NNNNNNNNNN ..................................... CATATCCACGCGCATACGACCGATCCGAATATGGTC 39108 37 100.0 35 NNNNNNNNNN ..................................... GGTAACAGGGACGGATGCGTGATGACAGAGCATGA 39180 37 100.0 37 NNNNNNNNNN ..................................... ATTTTCGTCTCCGACCAGATACCACGTGAGCTGCGAA 39254 37 100.0 37 NNNNNNNNNN ..................................... CATACCCGCTCTCGCCGTGTCATTCGGTGTTGGCGGT 39328 37 100.0 38 NNNNNNNNNN ..................................... TTCGCCATCGTCGTCGGTTACGGTCGGTGCGGGAGAGT 39403 37 100.0 36 NNNNNNNNNN ..................................... CTCAATGGGCCGAGAGACGTGGACAAAGGTTAGGTG 39476 37 100.0 35 NNNNNNNNNN ..................................... CAGCGCAAGGCCAGGACTTCGCCGACGCGCATGCC 39548 37 100.0 38 NNNNNNNNNN ..................................... GTCGATCAAGCCAAGTTACAAGGGATCGGTCGCTCAGT 39623 37 100.0 36 NNNNNNNNNN ..................................... CTGAACTATTTGGTGTCGTGGCTGAACCGCTTTGAA 39696 37 100.0 1 NNNNNNNNNN ..............................A.C.C.A NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 21 37 36 GTTGCTCCGCCGAGATCGTCGGCGGCCCCATTGAAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-14.00,-13.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [439,149] Score: 0.18/0.18 # # Final direction: F [0.96,0.64 Confidence: LOW] >NC_017174 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1343256 29 100.0 38 TTGTTTTGGG ............................. CTCAAAATTAAATAGTTGGCTATGGTTAAGGGATTGCC 1343323 29 100.0 38 AGGGATTGCC ............................. ATAATAGCAGATATGATGTTTAATAACGGAAGTATAAG 1343390 29 100.0 38 GAAGTATAAG ............................. CTGAATGAACCTAAGGTAGTTGAACAGATTGAAAAGAC 1343457 29 100.0 38 TTGAAAAGAC ............................. TATGTCAGGACTTCTTAAACCATATTCAGCATACACTC 1343524 29 100.0 37 GCATACACTC ............................. AAATTTAATATTGCTGGAAAAGGAGAAATGGATATTG 1343590 29 100.0 37 ATGGATATTG ............................. AATGCTGAACTTAAAGTAATGATGCTATTTTGGGACA 1343656 29 96.6 37 TTTTGGGACA ............T................ AAATTTGCAAGGCTAAATTGCCCCTTAATTAATGGTG 1343722 29 100.0 37 ATTAATGGTG ............................. AGTTTTTCTATATATTCAGATATTTCACTTTTATCTT 1343788 29 100.0 37 CTTTTATCTT ............................. GAAATATGTATAGAAGCATTGAAACAAGATAAATATT 1343854 29 100.0 GATAAATATT ............................. TTTATATTCC ========== ====== ====== ====== ========== ============================= 10 29 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.86%AT] # Reference repeat match suggestion: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA # # Final direction: F [0.91,0 Confidence: HIGH] >NC_017168 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2866883 28 100.0 33 GCATCAGTCT ............................ AGCAAAAATCTTAATTACATCTGATGATTTCGG 2866944 28 100.0 32 ATGATTTCGG ............................ TTTACGGCACGGCGAAAGATTCGGTTCTTGTC 2867004 28 100.0 33 GGTTCTTGTC ............................ TTCTGGATAGGACAAATAGGATGATTGTATCAG 2867065 28 100.0 33 ATTGTATCAG ............................ AACGAACCCACGTAGAATTGCCATCACCGCCGG 2867126 28 100.0 TCACCGCCGG ............................ AGTAAGATAA ========== ====== ====== ====== ========== ============================ 5 28 32 TTTCTAAGCTGCCTGTGCGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [48.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [65,356] Score: 0.18/0.18 # # Final direction: R [0,1.19 Confidence: HIGH] >NC_017174 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3266722 28 100.0 37 TGCGAAACGT ............................ CACTAACTCCAGTCCACTGTAATTACTATTCCTTAAT 3266787 28 100.0 38 ATTCCTTAAT ............................ CCATTGCATATAAGATAAGCTGCATTGATTTTTTAGGT 3266853 28 100.0 37 TTTTTTAGGT ............................ CTTGCATTGTAAACTAAAATGCTTTATTCTATATTTA 3266918 28 100.0 37 TCTATATTTA ............................ CTCTATTAATAAAATTATCTAATAAAGATGCAAACCC 3266983 28 100.0 38 ATGCAAACCC ............................ CACACATATTGCCTTCCCTTAAATCTCCAAAATCTATG 3267049 28 100.0 38 AAAATCTATG ............................ CTTGCTTATACTTCTTGCAACCTGCTCCTATAACATAA 3267115 28 100.0 37 TATAACATAA ............................ TCTTGCTCTGCTTCGCTTTTACTCATTGTGTCAACTG 3267180 28 100.0 37 GTGTCAACTG ............................ CACTACAATAATAGTGCCTTTTAGCAAAATTTACTAG 3267245 28 100.0 37 AATTTACTAG ............................ CACTTTTCACATAACCATGATACATTGCTCTACTTAA 3267310 28 100.0 37 CTCTACTTAA ............................ CAATCGGAGCTAATTTAGAAATTAAAGAGCTTACAAT 3267375 28 100.0 36 AGCTTACAAT ............................ CTAAATTATCTGCGTATCTTCCAGTCGCAAAAGCTA 3267439 28 100.0 38 GCAAAAGCTA ............................ CCCGTATATATACCCATCGAAAACAAAACATTATTTCG 3267505 28 100.0 36 CATTATTTCG ............................ CTGTCAGTAGAAGCTATTTTTGAAGGTATTTTATGC 3267569 28 100.0 37 TATTTTATGC ............................ CTTTCTCTATCATATTGTATATTATCTCTATCACATG 3267634 28 100.0 38 CTATCACATG ............................ CTTATCAATCTTAAGCCAAGTACCAGGTTGTCTACCAA 3267700 28 100.0 38 TGTCTACCAA ............................ CGAGAACATGCCCAACCAGATTTTAAGGGTGCTTTAAA 3267766 28 100.0 40 GTGCTTTAAA ............................ CTATAAGACTTTTCTTCTGATTTAGTTTTAAACTGTCTCT 3267834 28 100.0 37 AACTGTCTCT ............................ CCTATATTGAAATTTATTATGCCTTCATTTTACCATT 3267899 28 100.0 37 TTTTACCATT ............................ CCTGCTTTACCTGCCTTTCCCTGGTCTCTTGATACTC 3267964 28 100.0 37 CTTGATACTC ............................ CTTGGAGAAATGGCAAGACTTACGGAGTTTGGAGTTA 3268029 28 100.0 38 TTTGGAGTTA ............................ CTTGCCACATCCCTCTTATATTCTTCTTTTTCATCAAA 3268095 28 100.0 38 TTTCATCAAA ............................ CTTTTCTCTTAAAAATCCGTTATTTTCTTAGTAAACCA 3268161 28 100.0 39 TAGTAAACCA ............................ CAGAAAATACAATTACAGGAGTTGTGAGGATATTTTAGA 3268228 28 100.0 38 ATATTTTAGA ............................ CTAGAAGATAGAAGAAGCAATATAAAAGCAAAAATGCG 3268294 28 100.0 37 CAAAAATGCG ............................ CGGAATTACTTGGGACTAAAAAAGTAGAAACAGTTTT 3268359 28 100.0 35 AAACAGTTTT ............................ CATGCTACAGCAGAAAAAGTTGTAAGTATAAGCAA 3268422 28 100.0 38 GTATAAGCAA ............................ CCTGTTAATCCAAAGAAAGTATCTCCCATTTTACCATC 3268488 28 100.0 37 TTTTACCATC ............................ CACTTGATGGTATTAAACTCTCTAATATTATGCAATT 3268553 28 100.0 37 TTATGCAATT ............................ CTATATCAAAGCTGGAAAATCAAGAGTACAAAGATAT 3268618 28 100.0 36 ACAAAGATAT ............................ CCTGTAAATAGTATCGTGTTTCTCTGTATAAAGAAT 3268682 28 100.0 40 TATAAAGAAT ............................ CTTGTAAAGCTCCTAAATCTGCTCCTGCTAGAATATATTG 3268750 28 100.0 GAATATATTG ............................ CCCCAAAATA ========== ====== ====== ====== ========== ============================ 32 28 37 CTTTACATACCACTTAGTTAATATAAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:78.57%AT] # Reference repeat match suggestion: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA # # Final direction: R [0,0.5 Confidence: MEDIUM] >NC_017173 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1649491 29 100.0 37 TTATTTTGGG ............................. TTGTCATAGTAGCGACTTATTACAAAGTATTTTTCTA 1649557 29 100.0 37 TATTTTTCTA ............................. TACATCCTCATTAATTTCTTTGCTATCCCAAACAGCA 1649623 29 100.0 38 CCAAACAGCA ............................. CTCTTACGCTTTTCAATCACTTTTTCCTTGCTAAAATT 1649690 29 100.0 36 TGCTAAAATT ............................. TTGGAAATAAGTATAAAGACAGTGATATGGAAATGG 1649755 29 100.0 37 ATGGAAATGG ............................. TATCCATTTCATATTTAGATAAAATCTCTTTAAATGC 1649821 29 100.0 37 CTTTAAATGC ............................. ATGTTATTACATAAAAATTCTTCATCTATAACTTTAA 1649887 29 100.0 36 ATAACTTTAA ............................. AAAATAAGGGTTTAATTTCCCTGGTGTCGAGGAATA 1649952 29 100.0 36 TCGAGGAATA ............................. TTTAAATGAAACTCTTGAAATAGTTGACGTAGTAGC 1650017 29 100.0 ACGTAGTAGC ............................. TATATATTAG ========== ====== ====== ====== ========== ============================= 9 29 36 GTTTTATATTAACTATATGGAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:82.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [71.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA # # Final direction: R [0,0.27 Confidence: MEDIUM] >NC_017173 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1741818 29 100.0 37 CTAGAAAGTG ............................. ACATTTAAACCTGTTGCAAAAGCATTATCTGAATATG 1741884 29 100.0 38 TCTGAATATG ............................. TAATTTAATATTCTCTGGATTTGGTTCTCCATTTATGC 1741951 29 100.0 36 CCATTTATGC ............................. AGAACTTTTTTATATCAGAAGTACTTGACATGATTG 1742016 29 100.0 36 GACATGATTG ............................. ATAGATAGTTTTTGTTCTATCTTAACTCTTAGAGGA 1742081 29 100.0 TCTTAGAGGA ............................. GCTTTTGGGGAAAAACTAGGTGTCAGTAAAGATGTTA ========== ====== ====== ====== ========== ============================= 5 29 36 GTTTTAGATTAACTATATGGAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA # # Final direction: NA [0,0 Confidence: NA] >NC_017173 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1887965 29 100.0 37 NNNNNNNNNN ............................. TTTCTATGTCTTCTACTGTTATATATCTTTCAATTTT 1888031 29 100.0 38 NNNNNNNNNN ............................. CTCTGCGCAAAAGAGTGGTTGGGAATTTGATTTGAAAA 1888098 29 100.0 38 NNNNNNNNNN ............................. ATACTTGGTCAATACATTTCAAAAGTTGCAACAGAACA 1888165 29 100.0 37 NNNNNNNNNN ............................. CGGCAAACTTGAACTGTTTTTTCTTTTGCTTTTAAAA 1888231 29 100.0 37 NNNNNNNNNN ............................. ACTTTTGAACTAAAAAAAATTATTTATTTTTTATATG 1888297 29 100.0 35 NNNNNNNNNN ............................. TTTTTAGCACCCGCATACGAGTCAAAAAAAGATGA 1888361 29 100.0 37 NNNNNNNNNN ............................. TGGAAATCTATTTAAAAACTGCATCAAAGTATTGATA 1888427 29 100.0 36 NNNNNNNNNN ............................. CAAATTTTGTTTACACTGGATAGAAAAAACTGTTCT 1888492 29 100.0 36 NNNNNNNNNN ............................. ACGGGCAAAGAAGGATTCTCAACTTTAGGAACTGTA 1888557 29 100.0 36 NNNNNNNNNN ............................. CAAAATTCTGTTATTTCTTGAATTTTATCGCTTAAA 1888622 29 100.0 36 NNNNNNNNNN ............................. TCATTTTCTCCAAATTTATCACTCCCGCATTTGGGG 1888687 29 100.0 36 NNNNNNNNNN ............................. TGACTTTTTTCTTACTATACTTACTATCATTGCAAC 1888752 29 100.0 37 NNNNNNNNNN ............................. AGAAATATCAGAATTTTGTGGGCTTGGTTGGGAGATA 1888818 29 100.0 37 NNNNNNNNNN ............................. AAATATGGTAAGTAAAGTTGATGATATTGAACTAGGA 1888884 29 100.0 37 NNNNNNNNNN ............................. TAAGCACTAAGACATTCTTGTAAGCATTCTTCTGCTT 1888950 29 100.0 37 NNNNNNNNNN ............................. AAAACATGATTCTTATTTGTTCGAGCGTATTCATATA 1889016 29 100.0 37 NNNNNNNNNN ............................. AAAACATGATTCTTATTTGTTCGAGCGTATTCATATA 1889082 29 100.0 38 NNNNNNNNNN ............................. CAACATTAGGATTATTATAATAAAATCTTTCAAGAATA 1889149 29 100.0 37 NNNNNNNNNN ............................. ACATCTGCGTCATATCTAAATAAATTATCTCCAACTT 1889215 29 100.0 36 NNNNNNNNNN ............................. GCATATTTAGTTCCTTTTGTAGCATCTAATAAAGAC 1889280 29 100.0 38 NNNNNNNNNN .................A........... AGGGTTTCTGATAAAATCTTCAAACATGTAAAATATGT 1889347 29 100.0 36 NNNNNNNNNN .....G....................... TCTATTTTAGTGTATATTTCGTTTAAATAAGCTTTT 1889412 29 100.0 37 NNNNNNNNNN .................A........... CTTATACTTAGTTAGAACTATATATCGACACAAATAT 1889478 29 100.0 37 NNNNNNNNNN .C..............A......A..... TGCAATTTTTATTCGTTGTCCAATCGCTTTGAAATTT 1889544 29 100.0 1 NNNNNNNNNN ...............A............. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 25 29 36 GTTTTATATTAACTATGTGGTATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA # # Final direction: F [0.91,0 Confidence: HIGH] >NC_017173 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1742778 28 100.0 39 TTATTTTGGG ............................ TTTTTTTAGTTAGTATTATTTTTGCTTCAAGGGGCAATG 1742845 28 100.0 39 AGGGGCAATG ............................ TATAAAAAATGCAAATATAATCAAAATTATCATTCCTAA 1742912 28 100.0 39 TCATTCCTAA ............................ TATAGGTTACAGCAGTAAACAGACTAACTGGAACAAATC 1742979 28 100.0 37 GGAACAAATC ............................ TTCTGATGACATGAAAGAAATACTTGATATTTTTAGT 1743044 28 100.0 38 TATTTTTAGT ............................ TATTAAAAAAGAGTTAGAAGGTGGATTTGCAAAAATTA 1743110 28 100.0 37 GCAAAAATTA ............................ TAGTTGTCACAATATTATTTTTAATTTCTCCTAACTT 1743175 28 100.0 38 CTCCTAACTT ............................ TTTAGGTTTACAATTTAAACATCTAAAGTCAAGTAAAA 1743241 28 100.0 37 TCAAGTAAAA ............................ GCCAGAAGAAGCCGCATCTGCAATAAAGAAGTATGGA 1743306 28 100.0 GAAGTATGGA ............................ GATTGAAAAAA ========== ====== ====== ====== ========== ============================ 9 28 38 GTTTTAGATTAACTATATGGAATGTAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:78.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [70.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA # # Final direction: R [0,0.27 Confidence: MEDIUM] >NC_017173 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2805156 29 100.0 37 AAAAAGAAAA ............................. GTTTGTGTATCCAAAATAATAGTATTATTGCAAATAG 2805222 29 100.0 36 TTGCAAATAG ............................. TGTCTTATATACAGACATAGCTAAACTTGCAGTCGT 2805287 29 100.0 37 TTGCAGTCGT ............................. CATTCATAATCAAAAATGACAATACAGTATGGTCATG 2805353 29 100.0 36 TATGGTCATG ............................. TACATTATATAAGATAGCTAAAAATCTTTTAGGCAA 2805418 29 100.0 TTTTAGGCAA ............................. CCCAAAATAA ========== ====== ====== ====== ========== ============================= 5 29 36 ATTTACATTCCATATAGTTAATATAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:82.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [81.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA # # Final direction: F [0.27,0 Confidence: MEDIUM] >NC_017174 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1826292 29 100.0 36 TTATTTTGGG ............................. CTTGTAGATAATGCAGAAGAAGAAGAAAAACAGATT 1826357 29 100.0 37 AAAACAGATT ............................. GATGCTACCTTATTTTTATCTAATCCCCAAATAAACT 1826423 29 100.0 37 CAAATAAACT ............................. TTATTTCTTAACCAGTCAAATAATCTATTTTGTCCTG 1826489 29 100.0 36 TTTTGTCCTG ............................. ATCATAGTTTATTAACACAGGAAACGAGGTTAGTTC 1826554 29 100.0 37 AGGTTAGTTC ............................. AACTCTTTTAAAAAAGAATATACGATTTTCAGAGAAG 1826620 29 100.0 37 TTCAGAGAAG ............................. TATTAATTGCTTATCTATTAATTCTTTTAATTTTTCA 1826686 29 100.0 36 TAATTTTTCA ............................. TGAAGGGTTATAAAAAAAATAATAGCGAAAAGGGCG 1826751 29 100.0 37 GAAAAGGGCG ............................. CACGAAAAAATCAGAAGGGGAGGGGGGTTATTTAAAA 1826817 29 100.0 37 TTATTTAAAA ............................. TTAAAACTTGAATTATTTCAAAAAGCTAAACATCAAG 1826883 29 100.0 37 AAACATCAAG ............................. TTTAATTGCCCTTCATAGAATATTATTTCACCTTCTT 1826949 29 100.0 37 TCACCTTCTT ............................. TATGAGAAAGTTGAATTTAAAGGCGAAATGAACATGG 1827015 29 100.0 37 ATGAACATGG ............................. TCTTTATATTGATATCCAAGAATAAGCGCACGTTCTT 1827081 29 100.0 38 GCACGTTCTT ............................. TTGCTTAGCGCAATAACTTTTGAAAATACTACAGGAGT 1827148 29 100.0 37 CTACAGGAGT ............................. TAAGATGTCCAAATGCTAAGAGAGAATTCTTAGGATA 1827214 29 100.0 37 TCTTAGGATA ............................. AAAAGAAGTTTTGAAAGTAAATGTGTAAATAATAATA 1827280 29 100.0 38 AATAATAATA ............................. GAAGTCAACAATTTGGCTATTGGTTAAGTACAACTAGC 1827347 29 100.0 36 TACAACTAGC ............................. AAAGAAAATTGGGTTTTTGATTAAGAACTTGCGAAT 1827412 29 100.0 ACTTGCGAAT ............................. TTGCAACAAG ========== ====== ====== ====== ========== ============================= 18 29 36 GTTTTATATTAACTATGTGGTATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA # # Final direction: F [0.5,0 Confidence: MEDIUM] >NC_017174 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2152896 29 100.0 37 NNNNNNNNNN T.AA.TTC.....T.............G. GTAATTTTGGAAAAAATAATTACAGAGGTAATACAAC 2152962 29 100.0 37 NNNNNNNNNN ............................T GAGGCGTTTTTTTCTGTTCCGACTCCTGTTCCTGTAT 2153028 29 100.0 37 NNNNNNNNNN ............................. AAGGCTATACAGGATGATAATTTAAAAGAAAACTTCA 2153094 29 100.0 37 NNNNNNNNNN ............................. AGTTCAGTTGGAAATATAATTGTAGAACAATACTCTA 2153160 29 100.0 37 NNNNNNNNNN ............................. TCATTGATGCTAACTTAAGTATTCCTTGTTTTTGTGA 2153226 29 100.0 37 NNNNNNNNNN ............................. AAATAACTTAGTATGTCTAAATACAAATTTTAGACCT 2153292 29 100.0 38 NNNNNNNNNN ............................. TTAATGATGAAGGAAAAGAATATGTAGTATATGAATAT 2153359 29 100.0 36 NNNNNNNNNN ............................. AAGTTCTATATACAACTGTGCAAGTTCTGAATTAAT 2153424 29 100.0 38 NNNNNNNNNN ............................. TTAACCCTCTTGATAAAACAAGGAGGTATTAGATGAAA 2153491 29 100.0 36 NNNNNNNNNN ............................. GATACCGAAGGTAATTTACTTGCAATATCTAAATAC 2153556 29 100.0 37 NNNNNNNNNN ............................. GCGGTAAAATGTTAGATAAAACTGTTACATTTACAAA 2153622 29 100.0 37 NNNNNNNNNN ............................. TAAGTTTGAACACACTTATTTTCGACCCCTCAATACA 2153688 29 100.0 37 NNNNNNNNNN ............................. TTTTTGAGTATGGAGATAAAGTAAAAATTATACTTCC 2153754 29 100.0 36 NNNNNNNNNN ............................. TTAGCGTTGATAAAGATTCTATAGTAGTGAGAGGTG 2153819 29 100.0 38 NNNNNNNNNN ............................. TAAAAATTGGGATATAATTCATCAACAAATTTAACATA 2153886 29 100.0 36 NNNNNNNNNN ............................. ATTATCCTTCATGTGCTTAGCTCTTTTATATTTTTT 2153951 29 100.0 38 NNNNNNNNNN ............................. TCTAGCTATCCAGAAACTTATAAACCTGCTCCAGATTC 2154018 29 100.0 37 NNNNNNNNNN ............................. GGATATGTTGAAGGAACACATATGTTGCAACAAACCA 2154084 29 100.0 37 NNNNNNNNNN ............................. TAGCAGGAGATGATAGAGGGGTATATCACCAGGTGAT 2154150 29 100.0 37 NNNNNNNNNN ............................. GTTTTTCTTTATTAGATAAAAGTTCTCCGTCGAATCT 2154216 29 100.0 36 NNNNNNNNNN ............................. AATCATTCCTTTTGTTTCATCTTTAAGTTTTACGAC 2154281 29 100.0 38 NNNNNNNNNN ............................. TTAGTAAGCATAATAATTGCTTGTGTGATGATTTGTTT 2154348 29 100.0 37 NNNNNNNNNN ............................. AAAAAGAAACTACTTTGTATCTTTATGTTGGAATAGA 2154414 29 100.0 37 NNNNNNNNNN ............................. TACTTCGTCTTTTTTGATTTGAACGTCTTATTTTCTT 2154480 29 100.0 36 NNNNNNNNNN ............................. GAGATTTTCATATAGCCATAGACTGTTTTAGTTTTT 2154545 29 100.0 35 NNNNNNNNNN ............................. TGCTTGTGCTGTAGGTGTTCCTTGTGCTGTCATAT 2154609 29 100.0 38 NNNNNNNNNN ............................. TTTAAATAATACCTTAGTAGAATTATCAGAGAAAATAA 2154676 29 100.0 37 NNNNNNNNNN ............................. TCCTAAACCTTCTATCTTCTAAACTCTCATTACTTTT 2154742 29 100.0 37 NNNNNNNNNN ............................. ATGATAATAATGTAGTGAAACGAATAGCAAAAGAGTT 2154808 29 100.0 39 NNNNNNNNNN ............................. GAGGCAGAAATAATTAAATCCACAATAGATTTAGCTATA 2154876 29 100.0 37 NNNNNNNNNN ............................. AAATCCCTGCAACTGTAGTTGGTTGGGGTTATAATGA 2154942 29 100.0 37 NNNNNNNNNN ............................. TAATGAAGGTAGCGTTAGTACCAGGACATACACTAAC 2155008 29 100.0 37 NNNNNNNNNN ............................. CAGTAGCTAATTTACTTAATCTATAAGCATCAACCTC 2155074 29 100.0 37 NNNNNNNNNN ............................. TATTTAAATCTGATGAATATACTGCTCTTATTTGCCG 2155140 29 100.0 36 NNNNNNNNNN ............................. TGTTTGAACATGACTTTGAACATGTTTGTCTTTCTT 2155205 29 100.0 37 NNNNNNNNNN ............................. ACTAATTTAAAAAACCACCCACTTGTAGATAATGCAG 2155271 29 100.0 37 NNNNNNNNNN ............................. CAAAGTATAGGTCAGCATATAAACCTAAAGTGGAAGA 2155337 29 100.0 37 NNNNNNNNNN ............................. GAGAGTAAAGATTGTGATATAGCATACAAAAATTGGT 2155403 29 100.0 37 NNNNNNNNNN ............................. TTAATTGATTGTTGAGTAAATCCTAATTCTTTTATTT 2155469 29 100.0 38 NNNNNNNNNN ............................. TAGTTTATTGTGTGTAAATTCTGCTTCAAAACTTATTT 2155536 29 100.0 36 NNNNNNNNNN ............................. TCCACTCCAAGAATTAGGAATAGCCTTGCTTTCACT 2155601 29 100.0 37 NNNNNNNNNN ............................. TCTATGACCTATTGGTGCTAATCCAAGACCTTCTCCA 2155667 29 100.0 35 NNNNNNNNNN ............................. GCTCCTCACCTCTTAATACGCCAGAACTCAACCCT 2155731 29 100.0 38 NNNNNNNNNN ............................. TTCTTTAGGAATCATCAGTATGGATGAATATCAGTCTA 2155798 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 45 29 36 CTTTACATACCACATAGTTAATATAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [78.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA # # Final direction: R [0.27,0.41 Confidence: LOW] >NC_017174 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2220687 29 93.1 35 TAGACTATGC -....T....................... GCAACTGCAAGAGTAGAAATAACATTAATAATTTC 2220751 29 96.6 36 TAATAATTTC .C........................... AATACAAATAAGATTTTGTTTTCATATGATTCAGAA 2220816 29 100.0 38 TGATTCAGAA ............................. TGTGGATTACCAGTTCCTAAAAAACTAAAAGAAAAAAT 2220883 29 100.0 37 AAGAAAAAAT ............................. CTATCATTAGATTGTGAACCTATCTCTATTTTCCTAT 2220949 29 100.0 37 ATTTTCCTAT ............................. TAAATTTTGTATTCTTGACATTGACATCCAATATATA 2221015 29 100.0 36 CCAATATATA ............................. TGATAGAGAAACTTGAAAGCGAAGATGTGCTATTAA 2221080 29 100.0 36 GTGCTATTAA ............................. GGAAACTTGTATAATCACAATAACTAGCTTCGTTTC 2221145 29 100.0 36 GCTTCGTTTC ............................. TTCACTTTGATTTAACTCATCTCTTTTCACACCTTT 2221210 29 100.0 35 TCACACCTTT ............................. AATGCTGATAATAGTAAAATTAGCTCAATTTCTCG 2221274 29 100.0 38 CAATTTCTCG ............................. CTGTATATTTACAAGTTTTATATAAATATTAGTTTCCA 2221341 29 100.0 36 TTAGTTTCCA ............................. CCAGTTGAAAGGTATCCTATTATCTGCATTTCTTAA 2221406 29 100.0 37 CATTTCTTAA ............................. TTAACTAAAACTTGAAAACCATAATCTTTAAGCTTAA 2221472 29 100.0 TTAAGCTTAA ............................. CCTAAAATAA ========== ====== ====== ====== ========== ============================= 13 29 36 ATTTACATACCACTTAGTTAATATAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA # # Final direction: R [0,0.41 Confidence: MEDIUM] >NC_017174 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2331666 30 100.0 36 GTACTAATGA .............................. AATGGAAAGTGTATTTAAAAACTATATTGAATATTT 2331732 30 100.0 36 TTGAATATTT .............................. GGTATTAGCAAATGTGGAACAAGTAATTAAGTTAGC 2331798 30 100.0 36 TTAAGTTAGC .............................. TTTTTTCCCCCTTTAAATTTTAAAACTAATAATTTA 2331864 30 100.0 36 TAATAATTTA .............................. ATCTACTAGAGAAATTGATATACAAAGAGACTCTTA 2331930 30 100.0 35 GAGACTCTTA .............................. CTACTCAAACAAGGTAATCATGTACATAACATAGA 2331995 30 100.0 35 ATAACATAGA .............................. ATGCTTTTTGTGTGATGGAAATGGAAGGACTACAA 2332060 30 100.0 36 AGGACTACAA .............................. CCGTTTCCGAAAAAGTCAATATCACGACTCAACACA 2332126 30 100.0 36 ACTCAACACA .............................. TAGATACCCAAAAACCAGCTAGAGGGGCATCTTTGA 2332192 30 100.0 36 GCATCTTTGA .............................. TATGCCACAAGCAGAAGAAATTGGAATAGCTACTGT 2332258 30 100.0 35 TAGCTACTGT .............................. GAAGAGCAATCTCTTAACACTTCACAAAAAGAAAT 2332323 30 100.0 36 AAAAAGAAAT .............................. GACCAAGAACCTATCACTAAACTCATGTATAAACAT 2332389 30 100.0 36 GTATAAACAT .............................. TGGTAAAATGGCTAAGAAAAAAGAGCTAGAAGAAAA 2332455 30 100.0 36 TAGAAGAAAA .............................. GGAGCTTAAAAATGGGGGTTCAATTAACTCAAGAAA 2332521 30 100.0 37 ACTCAAGAAA .............................. TAAGTTATTTTTGTACATTACGATTTATTATATTTAA 2332588 30 100.0 36 TTATATTTAA .............................. TATTACAGATATAGCACATTCGCTCATCTTCAGACT 2332654 30 100.0 36 TCTTCAGACT .............................. ACTAAAGAAAAAGCTAAAAGTAAAAAAGTAGATGGA 2332720 30 100.0 36 AGTAGATGGA .............................. ATAAAAAATTAAAATAAATAAAATCAAAATAAGTGT 2332786 30 100.0 36 AAATAAGTGT .............................. AGGGGATATTCAGTTGTCAATGTACACTTTTTTCTA 2332852 30 100.0 37 CTTTTTTCTA .............................. GAAGACATTTTTTATTCTGCAAGTAATTTTTATTCTA 2332919 30 100.0 36 TTTTATTCTA .............................. CTACTAAAAATACTAAATTAGATGCTAAGTTCAATA 2332985 30 100.0 36 AAGTTCAATA .............................. CAACTATTGTTGAATTAGATAGTGCTTTAAGAGATA 2333051 30 100.0 36 TTAAGAGATA .............................. AATGGTATGGTAATAAGATTAAAGATTGGATAATCC 2333117 30 100.0 36 TGGATAATCC .............................. AGTAGAGATAATTGCTGAAATAGAAAAAGCTAAAGA 2333183 30 100.0 34 AAGCTAAAGA .............................. CTTTTGATAATAAAAGAACATCAGTTAGATTTGA 2333247 30 100.0 36 TTAGATTTGA .............................. TGATGGAGATGTTCTAGGAAGTGCTGCAAAAGAAAA 2333313 30 100.0 36 CAAAAGAAAA .............................. TCCAGAATTAACTTCATTTACTAAATTGAATTTTAA 2333379 30 100.0 35 TGAATTTTAA .............................. TTCAGAGGAAGCAAGAAGAGAAGGTTTAGATGCTG 2333444 30 100.0 36 TTAGATGCTG .............................. ACAGACTGGTGACCCAGATATAACTAAACTTCAAAA 2333510 30 100.0 35 AACTTCAAAA .............................. CAGCTATGTAAAACTCTTTTTTACCATTATAAAAT 2333575 30 100.0 36 ATTATAAAAT .............................. AGATGGAGTTAGATATAATAATCCATTTAGATATAT 2333641 30 100.0 36 TTAGATATAT .............................. AAATGCAGATGAACTTGAAAGAGCTACAAAACTATA 2333707 30 100.0 36 CAAAACTATA .............................. TCTTGAAGACGATATTTTCCAATAGAAGGATTAATA 2333773 30 100.0 36 AGGATTAATA .............................. GTTACAAAATGAATTAATACTTTATAAAGCATTTAA 2333839 30 100.0 36 AAGCATTTAA .............................. AGAAATTGAACTTGGTCTACTAAATTTAGAGCAATA 2333905 30 100.0 36 TAGAGCAATA .............................. TTAATATTTAATTCTCTATTTTCCTCTAATAAATCA 2333971 30 100.0 36 TAATAAATCA .............................. TAATACAAATAAAGAAGTTATAACAGCTACAATAAA 2334037 30 100.0 36 CTACAATAAA .............................. AAACATTTGATTTGGTGAGCCATCTGACTTAAACAT 2334103 30 100.0 ACTTAAACAT .............................. CACTTTAAAA ========== ====== ====== ====== ========== ============================== 38 30 35 ATTTAAATACATCTCATGTTACTGTTTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA # # Final direction: NA [0,0 Confidence: NA] >NC_017175 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1628626 29 100.0 37 NNNNNNNNNN ............................. TTGTCATAGTAGCGACTTATTACAAAGTATTTTTCTA 1628692 29 100.0 37 NNNNNNNNNN ............................. TACATCCTCATTAATTTCTTTGCTATCCCAAACAGCA 1628758 29 100.0 38 NNNNNNNNNN ............................. CTCTTACGCTTTTCAATCACTTTTTCCTTGCTAAAATT 1628825 29 100.0 36 NNNNNNNNNN ............................. TTGGAAATAAGTATAAAGACAGTGATATGGAAATGG 1628890 29 100.0 37 NNNNNNNNNN ............................. TATCCATTTCATATTTAGATAAAATCTCTTTAAATGC 1628956 29 100.0 37 NNNNNNNNNN ............................. ATGTTATTACATAAAAATTCTTCATCTATAACTTTAA 1629022 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 7 29 37 GTTTTATATTAACTATATGGAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:82.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA # # Final direction: NA [0,0 Confidence: NA] >NC_017175 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1864377 29 100.0 36 TTATTTTGGG ............................. ATTGTTTTACCTTCTAAAAGGTCACATATATTTATT 1864442 29 100.0 36 TATATTTATT ............................. TCTATATCTGTTTCAAAATCTGTTATGAAATACTCC 1864507 29 100.0 35 GAAATACTCC ............................. AATAACTTATCTATGAAATTAAATACTGTAACTTG 1864571 29 100.0 36 CTGTAACTTG ............................. TTGACCGACTTCATCAACTGCACCAGATTCTAATTC 1864636 29 100.0 36 ATTCTAATTC ............................. TTTCAACAGTGGTGGTGGTCGAGGAGTAGAAGTTCT 1864701 29 100.0 38 TAGAAGTTCT ............................. TTTATAACCTTTAATTACACCTCCCATATCACCACCAC 1864768 29 96.6 TCACCACCAC ...............C............. TTGCAACAAGT ========== ====== ====== ====== ========== ============================= 7 29 36 GTTTTATATTAACTATGTGGTATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA # # Final direction: F [0.91,0 Confidence: HIGH] >NC_017175 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1720082 29 100.0 37 TTATTTTGGG ............................. TTATCTGCGTCTTCTGAAATAGCATACTCTTCAAGAG 1720148 29 100.0 36 TCTTCAAGAG ............................. GTTGTAAGAAGTATCATTCTATTTTTTAATCTTTCT 1720213 29 100.0 38 TAATCTTTCT ............................. CTTATTTATAGTTGGGAAAATGGTTATAAATGTGGTAC 1720280 29 96.6 AATGTGGTAC ............................G CAACAAGAA ========== ====== ====== ====== ========== ============================= 4 29 37 GTTTTAGATTAACTATATGGAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA # # Final direction: F [0.41,0 Confidence: MEDIUM] >NC_017175 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 2782320 31 90.3 35 CAGTATTTTT .....TA.G...................... TTAAAGCTACATAATAAAAAATTAAGAAAAAGAAA 2782386 31 100.0 35 GAAAAAGAAA ............................... ATTCATAATCAAAAATGACAATACAGTATGGTCAT 2782452 31 93.5 34 GTATGGTCAT G.............................T ACATTATATAAGATAGCTAAAAATCTTTTAGGCA 2782517 31 100.0 CTTTTAGGCA ............................... CCAAAATAAA ========== ====== ====== ====== ========== =============================== 4 31 34 AATTTACATTCCATATAGTTAATATAAAACC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:80.65%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA # # Final direction: R [0,0.41 Confidence: MEDIUM] >NC_017175 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 3673918 24 100.0 57 NNNNNNNNNN C...........A........... ATTTGCTCCCGTTGCTCCGGTCGCCCCTGTTGCTCCGGTTGCTCCATTTGCTCCCGT 3673999 24 100.0 30 NNNNNNNNNN ................A.C..... TGCTACTCCATTTGCTCCCGTTGCTCCTAC 3674053 24 100.0 48 NNNNNNNNNN ........................ ATTTGCCCCTGTTGCTCCTGTTGCTCCTGTAGCTCCTGCTACTCCATT 3674125 24 100.0 39 NNNNNNNNNN ............A..C....GA.. TATTGGACCTGCCGCTCCATTTGCTCCCGTTGCTCCTAC 3674188 24 100.0 48 NNNNNNNNNN C....................... ATTTGCCCCTGTTGCTCCTGTCGCTCCAGTTGGACCTACTGCTCCATC 3674260 24 100.0 39 NNNNNNNNNN ........................ TACTGCTCCGGTTGGACCTATTGCCCCATCTGGACCTGT 3674323 24 100.0 21 NNNNNNNNNN ......A.....A.......GG.. TACCAAACCATTTGCTCCCGT 3674368 24 100.0 21 NNNNNNNNNN ...........CT..G....GG.. TACCAAACCATTTGCTCCCGT 3674413 24 100.0 39 NNNNNNNNNN ...........CT.....ATT... GGTTGGACCTATTGCTCCATCTGGACCTGTTGCTCCTAC 3674476 24 100.0 1 NNNNNNNNNN ............A...ACCT.... NNNNNNNNNN ========== ====== ====== ====== ========== ======================== 10 24 38 TGCTCCGGTTGGGCCTGTTGCTCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [4-19] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA # # Final direction: F [0.68,0.37 Confidence: LOW] >NC_017178 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1288149 29 100.0 37 TTATTTTGGG ............................. TCTCCATCTCCAATTAACATAAATAATTCATCCGCTG 1288215 29 100.0 38 TCATCCGCTG ............................. CCGCTTGGCAAATCATAAGAAGGATTATTTTCTCCAAC 1288282 29 100.0 35 TTTCTCCAAC ............................. AAAATAAAAGAGTTTGAATTACCCATTTTTTCATG 1288346 29 100.0 39 TTTTTTCATG ............................. TACGACATTGAATAAAATGGGTACAGAGACAATTTATAA 1288414 29 100.0 37 CAATTTATAA ............................. TTTATAAATCTTTTAATGACTGTCTCTGATGGTACAG 1288480 29 100.0 39 GATGGTACAG ............................. AAAGGAATAGATGATATGATTGCTAATGCTGAACAACAA 1288548 29 100.0 34 TGAACAACAA ............................. GGGTCTGACTTTAATATATATATATATATAAATT 1288611 29 100.0 37 TATATAAATT ............................. TTATAAACTCCCACGACAAAATTAACTATAACCTCGT 1288677 29 100.0 37 ATAACCTCGT ............................. AGTTTTAAAGAGGGCAGACCTAAAAAATATACTAAAA 1288743 29 100.0 37 TATACTAAAA ............................. GCAGAAGATTTAGCGACTGTTGTTGCTGAATGGGATG 1288809 29 100.0 37 GAATGGGATG ............................. ATTAAATTGCTCAGTCTAGTACTTAAAGAATTATAAG 1288875 29 100.0 38 GAATTATAAG ............................. TTGCTATGATTTAATTATACGACGTTTTGTCTTTAAAG 1288942 29 100.0 37 GTCTTTAAAG ............................. TGCTGTGCCACAATTTGATGCTTCTATAGCTAAATTC 1289008 29 100.0 37 AGCTAAATTC ............................. CTTTTAAGTGCATCAAAGGAGTTACAAGCTATATTTA 1289074 29 100.0 GCTATATTTA ............................. ACAGATCTAA ========== ====== ====== ====== ========== ============================= 15 29 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.86%AT] # Reference repeat match suggestion: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA # # Final direction: F [0.5,0 Confidence: MEDIUM] >NC_017177 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 115589 31 96.8 35 ATTTACAGCT ..............................C AAGCTATTATTTTCAAGCTGCATCCTGCTACTTAT 115655 31 100.0 36 TGCTACTTAT ............................... GGTAGCCGAGAATACGATTTTTACAGATATACAAAG 115722 31 100.0 ATATACAAAG ............................... CAGTTTCTAT ========== ====== ====== ====== ========== =============================== 3 31 35 ATTAAACCTTAACACTACGTGTATTTAAACT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:74.19%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-1.40,-1.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [276,1435] Score: 0.18/0.18 # # Final direction: R [0,0.59 Confidence: HIGH] >NC_017175 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================== ====== 3674438 26 100.0 73 NNNNNNNNNN .........A..GC.....C..GA.. TGTTGCTCCTACTGCTCCGGTTGGACCTACCTCTCCATCTGCTCCGGTTGGACCTGTTGCTCCTATTGGACCT 3674537 26 100.0 55 NNNNNNNNNN ..A.C........C............ TGTTGCTCCTATACTTCCGGTTGACCCTGTTGCTCCTGTATTTCCTATTGGTCCT 3674618 26 100.0 55 NNNNNNNNNN ..A.C........C............ AGTCGCTCCTGTATTTCCTGTTGGACCTGTTATTCCATTTGCTCCTGTTGCTCCG 3674699 26 100.0 28 NNNNNNNNNN ....CT.......G...GG....C.. AGTTGCTCCGGTTGCTCCTGTATTTCCT 3674753 26 100.0 28 NNNNNNNNNN .......................... AGTCGCTCCTGTATTTCCTGTTGGACCT 3674807 26 100.0 19 NNNNNNNNNN ..A.A..................... TGTTGCTCCCTTGTTTCCT 3674852 26 100.0 19 NNNNNNNNNN .......................... CGTTGCTCCGGTTGCTCCT 3674897 26 100.0 19 NNNNNNNNNN ..C....................... AGTCGCTCCTGTATTTCCT 3674942 26 100.0 28 NNNNNNNNNN ...........AGAA..TG...T... ATTTGCTCCAGTCGCTCCCATATTTCCT 3674996 26 100.0 19 NNNNNNNNNN ....................C..... GGTTGCTCCCGTATTTCCT 3675041 26 100.0 1 NNNNNNNNNN .......................... NNNNNNNNNN ========== ====== ====== ====== ========== ========================== 11 26 34 GTTGGACCTGTTATTCCATTTGCTCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.85%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [12-9] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [41.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA # # Final direction: R [0.27,0.41 Confidence: LOW] >NC_017177 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================ ====== 116780 16 100.0 50 ATTTACAGCT ................ ACGTGTATTTAAACTTTGTGTCGTCCCACATGGAGCCCCTAACCTCGAAC 116846 16 100.0 50 AACCTCGAAC ................ ACGTGTATTTAAAGTTATGTCTTTGTTACTTCCTTTCTTAACATGGTCTA 116912 16 100.0 49 ACATGGTCTA ................ TTGTGTATTTAAACACTGGCGCATTTACAGCAATTGTAGCTTCTGCACG 116977 16 93.8 51 CTTCTGCACG ...T............ ATGTGTATTTAAACTTACTTTCATTAACCAGAATTATTGGTTTATCTTTAG 117044 16 100.0 51 TTATCTTTAG ................ TTGTGTATTTAAATAAGGGCGGGAAAGCCGTTTTCAAATTCACCAAACCAT 117111 16 93.8 ACCAAACCAT ..C............. ATGTGTAATAA ========== ====== ====== ====== ========== ================ 6 16 50 ATTAAACCTTAACACT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1467,61] Score: 0.18/0.18 # # Final direction: F [0.59,0 Confidence: HIGH] >NC_017177 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 127199 32 100.0 32 GTTTACAGCT ................................ GAACATCCAAAGCCTGTTGCTGTGCCACTTGG 127263 32 100.0 35 TGCCACTTGG ................................ CGTCCATCCAAGTTCTGGTAGCTTATTTCTAAATT 127330 32 96.9 34 TTTCTAAATT ..............................C. AAACAAACAAATTAGATAGTCCGATTAAACTTTT 127396 32 100.0 TTAAACTTTT ................................ TTGCCAGCTTTCTCCTTTATCTACTCCATAAAGA ========== ====== ====== ====== ========== ================================ 4 32 33 ATTAAACCTTAACACTATGTGTATTTAAACAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:78.12%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-1.40,-1.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [451,103] Score: 0.18/0.18 # # Final direction: F [0.59,0 Confidence: HIGH] >NC_017177 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 128635 30 100.0 44 GTTTACAGCT .............................. AATATGTATATATGCATAACCTAATAACCTAATATTTAAACTAT 128709 30 100.0 36 TTTAAACTAT .............................. GAAGTTTAGTTTTTAGTTCTTCATATTTTAAAAAGT 128775 30 100.0 36 TTTAAAAAGT .............................. CTTTAATATAGAAGCTGTAATAGGAAAAACAGCCCC 128841 30 100.0 AAACAGCCCC .............................. TATTCTTTCATACTCAAATTTAAAGGAAGGTTTATTG ========== ====== ====== ====== ========== ============================== 4 30 38 ATTAAACCTTAACACTATGTGTATTTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-1.40,-1.40] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [271,108] Score: 0.18/0.18 # # Final direction: F [0.18,0 Confidence: MEDIUM] >NC_017177 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 133975 31 100.0 34 NNNNNNNNNN ............................... TGGGAGATTCTCCAGAGTTTTCCGCATCAGTGAA 134040 31 100.0 35 NNNNNNNNNN ............................... AAGTGTCTATTAACATTTGCAACAGTGTCTTCTAC 134106 31 100.0 35 NNNNNNNNNN ............................... GTTATATTTTTGTTGCTTCCCTTCTTAACATGGTC 134172 31 100.0 36 NNNNNNNNNN ............................... CCATATCTATCTTTCAAAAACTCATATGCATATTTA 134239 31 100.0 35 NNNNNNNNNN ............................... TAATTAAAATATTTACAAATAGAATTATAAGAAAG 134305 31 100.0 34 NNNNNNNNNN ............................... TGATAAAACACTACATACAAACTCAACCTCGCTC 134370 31 100.0 34 NNNNNNNNNN ............................... TGTTATATAAATACATATTACACAAGATATGTAT 134435 31 100.0 1 NNNNNNNNNN ................T............CA NNNNNNNNNN ========== ====== ====== ====== ========== =============================== 8 31 34 ATTAAACCTTAACACTATGTGTATTTAAATT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:80.65%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-1.40,-1.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [78.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [409,68] Score: 0.18/0.18 # # Final direction: F [0.86,0 Confidence: HIGH] >NC_017177 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 144452 30 100.0 37 GTTTACAGCT .............................. TTGTTGGCAAAATTAACTTTAAACATTCTTTCACTGA 144519 30 100.0 37 CTTTCACTGA .............................. ATCGCCCCTTGCACATTCGTAGCAGTAAGCTTGCTTG 144586 30 100.0 37 AGCTTGCTTG .............................. TCGGGTAAATCTTTTTCTTTAGCTCAAAGAACAGTAT 144653 30 100.0 35 AGAACAGTAT .............................. TGCTATCTATTAGTTTTTTAAAACTGTTCTCTCTG 144718 30 96.7 35 GTTCTCTCTG .................C............ CATGCTCCACCGCCTACAACATAAAGATTTTGCGT 144783 30 96.7 GATTTTGCGT .................C............ TTTCTTTGTT ========== ====== ====== ====== ========== ============================== 6 30 36 ATTAAACCTTAACACTAAGTGTATTTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:73.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-1.40,-1.40] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [78.3-80.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [1009,863] Score: 0/0.18 # # Final direction: NA [0,0 Confidence: NA] >NC_017179 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1304505 29 100.0 37 TTATTTTGGG ............................. TCTCCATCTCCAATTAACATAAATAATTCATCCGCTG 1304571 29 100.0 38 TCATCCGCTG ............................. CCGCTTGGCAAATCATAAGAAGGATTATTTTCTCCAAC 1304638 29 100.0 35 TTTCTCCAAC ............................. AAAATAAAAGAGTTTGAATTACCCATTTTTTCATG 1304702 29 100.0 39 TTTTTTCATG ............................. TACGACATTGAATAAAATGGGTACAGAGACAATTTATAA 1304770 29 100.0 37 CAATTTATAA ............................. TTTATAAATCTTTTAATGACTGTCTCTGATGGTACAG 1304836 29 100.0 39 GATGGTACAG ............................. AAAGGAATAGATGATATGATTGCTAATGCTGAACAACAA 1304904 29 100.0 34 TGAACAACAA ............................. GGGTCTGACTTTAATATATATATATATATAAATT 1304967 29 100.0 37 TATATAAATT ............................. TTATAAACTCCCACGACAAAATTAACTATAACCTCGT 1305033 29 100.0 37 ATAACCTCGT ............................. AGTTTTAAAGAGGGCAGACCTAAAAAATATACTAAAA 1305099 29 100.0 37 TATACTAAAA ............................. GCAGAAGATTTAGCGACTGTTGTTGCTGAATGGGATG 1305165 29 100.0 37 GAATGGGATG ............................. ATTAAATTGCTCAGTCTAGTACTTAAAGAATTATAAG 1305231 29 100.0 38 GAATTATAAG ............................. TTGCTATGATTTAATTATACGACGTTTTGTCTTTAAAG 1305298 29 100.0 37 GTCTTTAAAG ............................. TGCTGTGCCACAATTTGATGCTTCTATAGCTAAATTC 1305364 29 100.0 37 AGCTAAATTC ............................. CTTTTAAGTGCATCAAAGGAGTTACAAGCTATATTTA 1305430 29 100.0 GCTATATTTA ............................. ACAGATCTAA ========== ====== ====== ====== ========== ============================= 15 29 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.86%AT] # Reference repeat match suggestion: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [909,1218] Score: 0/0.18 # # Final direction: F [0.5,0 Confidence: MEDIUM] >NC_017177 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================================================== ====== 292440 56 87.5 10 AGAGCAAACA ......C.T...T..TT...............T.....G................. AGAACAGACG 292506 56 92.9 10 AGAACAGACG ........A...C.T.................T....................... GAAGCAGACA 292572 56 100.0 10 GAAGCAGACA ........................................................ GGAGCAGACA 292638 56 100.0 GGAGCAGACA ........................................................ GGA ========== ====== ====== ====== ========== ======================================================== 4 56 10 GAAGAAATCTGTATAGAAGCAGTAAAACAAAACGGTTTAGCTCTTGAGTATGTAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.60,-2.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [686,884] Score: 0/0.18 # # Final direction: F [0.64,0.41 Confidence: LOW] >NC_017178 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1497487 29 93.1 37 TTGGGGTAAA ........................G...G AGGTTTTTCAGAAGTATATGTACGTCTATATTGTAAA 1497553 29 100.0 36 ATATTGTAAA ............................. AAGGAAGGTGGAAGTCAATATGCATGGGTCAAATGG 1497618 29 100.0 36 GGTCAAATGG ............................. ACGAAATTAGAGTTTGAAATATATGACTACATAATA 1497683 29 100.0 38 CTACATAATA ............................. TTGTGTCACATCATTGTCACTTCTTTAGAATATCAAAA 1497750 29 100.0 38 AATATCAAAA ............................. TTTTAAGCAGGTGATTAAATGATTAAAAAAGTAGAAAA 1497817 29 100.0 38 AAGTAGAAAA ............................. AATAACTTGTCAATGTAGTTATATGCAACAACTTCTAT 1497884 29 100.0 37 CAACTTCTAT ............................. GAATTATATATTATGAAAAAATATGGAGTCACAGAGG 1497950 29 100.0 36 GTCACAGAGG ............................. TTGCAGGTTTTCCTTATAGTTTGCCATATGTTCCTG 1498015 29 100.0 35 TATGTTCCTG ............................. TACTTTAGCACTAGTAAAGGTAGAATTATTAAAGT 1498079 29 100.0 37 TTATTAAAGT ............................. TCGAATGTGAATGGCACTTCTATTTCTCCAACTTTTG 1498145 29 100.0 CCAACTTTTG ............................. AGTATAATGT ========== ====== ====== ====== ========== ============================= 11 29 36 GTTTTATATTAACTAAGTGGTATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA # # Final direction: R [0.5,0.68 Confidence: LOW] >NC_017178 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1608857 29 100.0 36 TTATTTTGGG ............................. CTCGGAGAATTTCCTAATGTGGATTTAATAGGAAGT 1608922 29 100.0 37 AATAGGAAGT ............................. TTTAGCAAATTTTTCGTAAAAGTCACTATTTTCAATG 1608988 29 100.0 38 ATTTTCAATG ............................. ACATATAAAACTTTCATCTTCTGTTAATTCATTAAAAC 1609055 29 100.0 TCATTAAAAC ............................. CCATCTTTTGT ========== ====== ====== ====== ========== ============================= 4 29 37 GTTTTATATTAACTATATGGAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:82.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [68.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA # # Final direction: R [0,0.27 Confidence: MEDIUM] >NC_017178 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1841322 29 100.0 37 TTATTTTGGG ............................. TTAATTTATCTATAATTTAAAACGGTGAATTACATAT 1841388 29 100.0 37 AATTACATAT ............................. TAAAGAGGGGTACTTCGTACTTTTACCACTCAAACTA 1841454 29 100.0 38 ACTCAAACTA ............................. AGGTCAAGCATAGATTTTGCAACTGGAAGATAAGAAGA 1841521 29 100.0 37 GATAAGAAGA ............................. GTTTTAGAACAGAAAAAATTGTATAAATTGTGGAATG 1841587 29 100.0 37 TTGTGGAATG ............................. TTGTAAAATGTAAATAGCATATTAATTTTTCTTTCAC 1841653 29 100.0 37 TTTCTTTCAC ............................. TGGAGCATTATGTTTTTAGGTTACGGAGCAACATTTA 1841719 29 100.0 37 GCAACATTTA ............................. GGTGATAGTGGAAGTTTTACTTATACTTGGCGTGCTG 1841785 29 100.0 38 TGGCGTGCTG ............................. TTCAGAATACTTAGCTCCTGCGCCTATATCGTCTGAAT 1841852 29 100.0 36 TCGTCTGAAT ............................. AAAGTTTTGCGCATTGTATGTGTGCCTAGATTATCT 1841917 29 100.0 37 TAGATTATCT ............................. ATGTCCCCACATCAATTTTCCTCCGCATGAAAAAATC 1841983 29 100.0 37 TGAAAAAATC ............................. TTTAGAAACAACAGAATAAACATAATATATAAGCATA 1842049 29 100.0 36 TATAAGCATA ............................. CTATATCGCATATTCTTTTATCTAGGTCTTCTTTTC 1842114 29 100.0 37 TCTTCTTTTC ............................. ATAATCTTGTTATAGACTTTACTATTGTTGTAATAGA 1842180 29 100.0 35 TTGTAATAGA ............................. CTTACCAGACCCTGCAACACTAAATGACTTACATA 1842244 29 100.0 37 GACTTACATA ............................. TCATCAGTATTTGTAAAATGCTTTAACTTATCATAAT 1842310 29 100.0 39 TTATCATAAT ............................. TTTTACTTTTCCTTTCTATGTGTCCAATTCGGACACATT 1842378 29 96.6 CGGACACATT .................A........... CTTATACTTA ========== ====== ====== ====== ========== ============================= 17 29 37 GTTTTATATTAACTATGTGGTATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [68.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA # # Final direction: F [0.91,0.27 Confidence: MEDIUM] >NC_017178 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1701535 29 100.0 36 TTATTTTGGG ............................. GTTGTAAGAAGTATCATTCTATTTTTTAATCTTTCT 1701600 29 100.0 37 TAATCTTTCT ............................. TTCAGTGAGAATAAGCTTTATTGTCGATGTAACACTC 1701666 29 100.0 37 TGTAACACTC ............................. AGTACATATAATGAGTCTTTAACATCAGTTATGAAAG 1701732 29 100.0 36 GTTATGAAAG ............................. GATTGTACTTTAGCGTCTGCACTAGCTTTGTCTATC 1701797 29 100.0 TTTGTCTATC ............................. TATTTTACAGA ========== ====== ====== ====== ========== ============================= 5 29 36 GTTTTAGATTAACTATATGGAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA # # Final direction: NA [0,0 Confidence: NA] >NC_017178 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2191965 29 96.6 36 ACAATTTTAA -............................ AGTTGTTTTTATTTTTTCTAAAGAGAAAAAACTAGA 2192030 29 100.0 37 AAAAACTAGA ............................. TTTCTGTATATTTTAGTTGTGTTTTAATATTATAACA 2192096 29 100.0 38 TATTATAACA ............................. ATGGCAGTAACTAAGAAGAAAACTATACCTTTTTTATT 2192163 29 100.0 37 CTTTTTTATT ............................. GAGGAAATTTTATACTAATGACTGATGCTAGATTTAA 2192229 29 100.0 38 CTAGATTTAA ............................. TATTATAAGGAGCATTATACGACCAAAAGCCAAAGCAG 2192296 29 100.0 37 GCCAAAGCAG ............................. AAGCAACAGCAAGAGTCGCGACAACATTAAAAACTTC 2192362 29 100.0 39 TAAAAACTTC ............................. CTTTATTTTTTTCTCTATATCGAGTTCGCCAAATTCACT 2192430 29 100.0 36 CAAATTCACT ............................. AGTCCAGCGTTGTGTGGTCGTAACACACCAATCCTA 2192495 29 100.0 ACCAATCCTA ............................. CCCAAAATAA ========== ====== ====== ====== ========== ============================= 9 29 37 CTTTACATTCCATATAGTTAATATAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA # # Final direction: R [0,0.41 Confidence: MEDIUM] >NC_017178 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3264111 29 100.0 37 NNNNNNNNNN .C...TC............G......... CTGACACTGTGTCTTGTGTGAGTCTTTTCTTTATCCT 3264177 29 100.0 37 NNNNNNNNNN ............................. GATTAAGCCCAGTAAAAAGACTCGAATCTCTTATCGC 3264243 29 100.0 38 NNNNNNNNNN ............................. GCAAAAAATGTTGATATTCCCAAAATTAATATTGATGA 3264310 29 100.0 37 NNNNNNNNNN ............................. ATTATAGAAGTACATATATTGCTGAAAAACCTCTTGT 3264376 29 100.0 37 NNNNNNNNNN ............................. AGTTAGTGATATCAATATGCTAAGCAATATTTTTACA 3264442 29 100.0 37 NNNNNNNNNN ............................. TTTATATTTCGTCGCACGGATTCGTGCGAAGGGTTGG 3264508 29 100.0 36 NNNNNNNNNN ............................. TAATTTAGTTATATCCATTTGTTTAACCCAATTAGT 3264573 29 100.0 37 NNNNNNNNNN ............................. GTTTCATTTTGCACTATATCAAGCTTAGTATACAATG 3264639 29 100.0 37 NNNNNNNNNN ............................. TTTTATATTTAATTTTAAAGATTAAAGGTATAAACAA 3264705 29 100.0 37 NNNNNNNNNN ............................. TACTAGAATTATTAAATGAAATGAACAATAATATTGT 3264771 29 100.0 36 NNNNNNNNNN ............................. GATTTAAATGCAACACAAATTATAACATCTAAGAAT 3264836 29 100.0 36 NNNNNNNNNN ............................. AAGATTGAAATTTCAACACTTTCACCTTGTATATCT 3264901 29 100.0 38 NNNNNNNNNN ............................. AGGTTAAAAAGCAATATAAAAGATTGCATGGAATTACT 3264968 29 100.0 37 NNNNNNNNNN ............................. AAGTCTCAATAACAACAGTCGAAGCAGAAAAATCCGG 3265034 29 100.0 37 NNNNNNNNNN ............................. GTAAAATGAGAAATAAAAGTAAACAAAAAGGTTTAGT 3265100 29 100.0 41 NNNNNNNNNN ............................. CTGAAACCCTCGGATTTAGTAACCGATTCTATGTCGAGTCT 3265170 29 100.0 38 NNNNNNNNNN ............................. AATCTAAAATATGTTCGTTAAAAGGGAGTGTGTAATTA 3265237 29 100.0 38 NNNNNNNNNN ............................. GTTTCTTATACAACTCTTAACTCCAAGCCCATTTTGGA 3265304 29 100.0 36 NNNNNNNNNN ............................. GTATAAAAAAAGAGTTAGAAGCATTAGACAAATGGA 3265369 29 100.0 38 NNNNNNNNNN ............................. TATAATTGGGATGGTCAGGTTTCTGATAAGGTTAATAA 3265436 29 100.0 37 NNNNNNNNNN ............................. TGTTTTTTAGTTTTCGTGATTCAAATGGTTCTTTGTT 3265502 29 100.0 36 NNNNNNNNNN ............................. AACTCATGTAACAAGTATTAAGACTTGCACCTTTAA 3265567 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 23 29 37 ATTTACATACCACTTAGTTAATATAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA # # Final direction: R [0,0.41 Confidence: MEDIUM] >NC_017178 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3510996 29 100.0 36 CCCTTCAATA ............................. CTCTCTACTAAAATTACTTCCACATATAGCTACAGA 3511061 29 100.0 39 TAGCTACAGA ............................. TGTACCTGGGTCTTTTATCTTACTTGTAAGTGTACTTCT 3511129 29 100.0 37 GTGTACTTCT ............................. ATTGCAGATAGGTCTGTGCCATCATTCGTGCTGTTAC 3511195 29 100.0 36 GTGCTGTTAC ............................. TGGGATGGATTTTGAAGCTTCTATGTCAAATGTACA 3511260 29 100.0 37 CAAATGTACA ............................. GAAACCTCTCTTTAAAATTATTCATAGAATTTATAAA 3511326 29 96.6 36 AATTTATAAA ............T................ ATTGTTGCTAGAAAACATTAAAATACATTACACATA 3511391 29 100.0 37 ATTACACATA ............................. GGCTGGACTTGTAATAGTTGTAACTAAAATTAGTGAA 3511457 29 100.0 39 AATTAGTGAA ............................. GGGTAGAATGAATCAAATAGCAAAAGTACTTTCCGGAAT 3511525 29 100.0 TTTCCGGAAT ............................. CCCAAATAAA ========== ====== ====== ====== ========== ============================= 9 29 37 ATTTATAACTAACTTAGTGTAATTTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:82.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA # # Final direction: F [0.41,0.27 Confidence: LOW] >NC_017179 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1513844 29 93.1 37 TTGGGGTAAA ........................G...G AGGTTTTTCAGAAGTATATGTACGTCTATATTGTAAA 1513910 29 100.0 36 ATATTGTAAA ............................. AAGGAAGGTGGAAGTCAATATGCATGGGTCAAATGG 1513975 29 100.0 36 GGTCAAATGG ............................. ACGAAATTAGAGTTTGAAATATATGACTACATAATA 1514040 29 100.0 38 CTACATAATA ............................. TTGTGTCACATCATTGTCACTTCTTTAGAATATCAAAA 1514107 29 100.0 38 AATATCAAAA ............................. TTTTAAGCAGGTGATTAAATGATTAAAAAAGTAGAAAA 1514174 29 100.0 38 AAGTAGAAAA ............................. AATAACTTGTCAATGTAGTTATATGCAACAACTTCTAT 1514241 29 100.0 37 CAACTTCTAT ............................. GAATTATATATTATGAAAAAATATGGAGTCACAGAGG 1514307 29 100.0 36 GTCACAGAGG ............................. TTGCAGGTTTTCCTTATAGTTTGCCATATGTTCCTG 1514372 29 100.0 35 TATGTTCCTG ............................. TACTTTAGCACTAGTAAAGGTAGAATTATTAAAGT 1514436 29 100.0 37 TTATTAAAGT ............................. TCGAATGTGAATGGCACTTCTATTTCTCCAACTTTTG 1514502 29 100.0 CCAACTTTTG ............................. AGTATAATGT ========== ====== ====== ====== ========== ============================= 11 29 36 GTTTTATATTAACTAAGTGGTATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [532,1064] Score: 0/0.18 # # Final direction: R [0.5,0.68 Confidence: LOW] >NC_017179 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1857676 29 100.0 37 TTATTTTGGG ............................. TTAATTTATCTATAATTTAAAACGGTGAATTACATAT 1857742 29 100.0 37 AATTACATAT ............................. TAAAGAGGGGTACTTCGTACTTTTACCACTCAAACTA 1857808 29 100.0 38 ACTCAAACTA ............................. AGGTCAAGCATAGATTTTGCAACTGGAAGATAAGAAGA 1857875 29 100.0 37 GATAAGAAGA ............................. GTTTTAGAACAGAAAAAATTGTATAAATTGTGGAATG 1857941 29 100.0 37 TTGTGGAATG ............................. TTGTAAAATGTAAATAGCATATTAATTTTTCTTTCAC 1858007 29 100.0 37 TTTCTTTCAC ............................. TGGAGCATTATGTTTTTAGGTTACGGAGCAACATTTA 1858073 29 100.0 37 GCAACATTTA ............................. GGTGATAGTGGAAGTTTTACTTATACTTGGCGTGCTG 1858139 29 100.0 38 TGGCGTGCTG ............................. TTCAGAATACTTAGCTCCTGCGCCTATATCGTCTGAAT 1858206 29 100.0 36 TCGTCTGAAT ............................. AAAGTTTTGCGCATTGTATGTGTGCCTAGATTATCT 1858271 29 100.0 37 TAGATTATCT ............................. ATGTCCCCACATCAATTTTCCTCCGCATGAAAAAATC 1858337 29 100.0 37 TGAAAAAATC ............................. TTTAGAAACAACAGAATAAACATAATATATAAGCATA 1858403 29 100.0 36 TATAAGCATA ............................. CTATATCGCATATTCTTTTATCTAGGTCTTCTTTTC 1858468 29 100.0 37 TCTTCTTTTC ............................. ATAATCTTGTTATAGACTTTACTATTGTTGTAATAGA 1858534 29 100.0 35 TTGTAATAGA ............................. CTTACCAGACCCTGCAACACTAAATGACTTACATA 1858598 29 100.0 37 GACTTACATA ............................. TCATCAGTATTTGTAAAATGCTTTAACTTATCATAAT 1858664 29 100.0 39 TTATCATAAT ............................. TTTTACTTTTCCTTTCTATGTGTCCAATTCGGACACATT 1858732 29 96.6 CGGACACATT .................A........... CTTATACTTA ========== ====== ====== ====== ========== ============================= 17 29 37 GTTTTATATTAACTATGTGGTATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [68.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [648,541] Score: 0/0.18 # # Final direction: F [0.91,0.27 Confidence: MEDIUM] >NC_017179 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1625214 29 100.0 36 TTATTTTGGG ............................. CTCGGAGAATTTCCTAATGTGGATTTAATAGGAAGT 1625279 29 100.0 37 AATAGGAAGT ............................. TTTAGCAAATTTTTCGTAAAAGTCACTATTTTCAATG 1625345 29 100.0 38 ATTTTCAATG ............................. ACATATAAAACTTTCATCTTCTGTTAATTCATTAAAAC 1625412 29 100.0 TCATTAAAAC ............................. CCATCTTTTGT ========== ====== ====== ====== ========== ============================= 4 29 37 GTTTTATATTAACTATATGGAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:82.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [68.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [662,236] Score: 0.18/0.18 # # Final direction: R [0.18,0.27 Confidence: LOW] >NC_017179 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1717891 29 100.0 36 TTATTTTGGG ............................. GTTGTAAGAAGTATCATTCTATTTTTTAATCTTTCT 1717956 29 100.0 37 TAATCTTTCT ............................. TTCAGTGAGAATAAGCTTTATTGTCGATGTAACACTC 1718022 29 100.0 37 TGTAACACTC ............................. AGTACATATAATGAGTCTTTAACATCAGTTATGAAAG 1718088 29 100.0 36 GTTATGAAAG ............................. GATTGTACTTTAGCGTCTGCACTAGCTTTGTCTATC 1718153 29 100.0 TTTGTCTATC ............................. TATTTTACAG ========== ====== ====== ====== ========== ============================= 5 29 36 GTTTTAGATTAACTATATGGAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [743,252] Score: 0.18/0.18 # # Final direction: F [0.18,0 Confidence: MEDIUM] >NC_017179 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2208323 29 96.6 36 ACAATTTTAA -............................ AGTTGTTTTTATTTTTTCTAAAGAGAAAAAACTAGA 2208388 29 100.0 37 AAAAACTAGA ............................. TTTCTGTATATTTTAGTTGTGTTTTAATATTATAACA 2208454 29 100.0 38 TATTATAACA ............................. ATGGCAGTAACTAAGAAGAAAACTATACCTTTTTTATT 2208521 29 100.0 37 CTTTTTTATT ............................. GAGGAAATTTTATACTAATGACTGATGCTAGATTTAA 2208587 29 100.0 38 CTAGATTTAA ............................. TATTATAAGGAGCATTATACGACCAAAAGCCAAAGCAG 2208654 29 100.0 37 GCCAAAGCAG ............................. AAGCAACAGCAAGAGTCGCGACAACATTAAAAACTTC 2208720 29 100.0 39 TAAAAACTTC ............................. CTTTATTTTTTTCTCTATATCGAGTTCGCCAAATTCACT 2208788 29 100.0 36 CAAATTCACT ............................. AGTCCAGCGTTGTGTGGTCGTAACACACCAATCCTA 2208853 29 100.0 ACCAATCCTA ............................. CCCAAAATAA ========== ====== ====== ====== ========== ============================= 9 29 37 CTTTACATTCCATATAGTTAATATAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [238,831] Score: 0.18/0.18 # # Final direction: R [0,0.59 Confidence: HIGH] >NC_017179 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3252577 29 100.0 37 NNNNNNNNNN .C...TC............G......... CTGACACTGTGTCTTGTGTGAGTCTTTTCTTTATCCT 3252643 29 100.0 37 NNNNNNNNNN ............................. GATTAAGCCCAGTAAAAAGACTCGAATCTCTTATCGC 3252709 29 100.0 38 NNNNNNNNNN ............................. GCAAAAAATGTTGATATTCCCAAAATTAATATTGATGA 3252776 29 100.0 37 NNNNNNNNNN ............................. ATTATAGAAGTACATATATTGCTGAAAAACCTCTTGT 3252842 29 100.0 37 NNNNNNNNNN ............................. AGTTAGTGATATCAATATGCTAAGCAATATTTTTACA 3252908 29 100.0 37 NNNNNNNNNN ............................. TTTATATTTCGTCGCACGGATTCGTGCGAAGGGTTGG 3252974 29 100.0 36 NNNNNNNNNN ............................. TAATTTAGTTATATCCATTTGTTTAACCCAATTAGT 3253039 29 100.0 37 NNNNNNNNNN ............................. GTTTCATTTTGCACTATATCAAGCTTAGTATACAATG 3253105 29 100.0 37 NNNNNNNNNN ............................. TTTTATATTTAATTTTAAAGATTAAAGGTATAAACAA 3253171 29 100.0 37 NNNNNNNNNN ............................. TACTAGAATTATTAAATGAAATGAACAATAATATTGT 3253237 29 100.0 36 NNNNNNNNNN ............................. GATTTAAATGCAACACAAATTATAACATCTAAGAAT 3253302 29 100.0 36 NNNNNNNNNN ............................. AAGATTGAAATTTCAACACTTTCACCTTGTATATCT 3253367 29 100.0 38 NNNNNNNNNN ............................. AGGTTAAAAAGCAATATAAAAGATTGCATGGAATTACT 3253434 29 100.0 37 NNNNNNNNNN ............................. AAGTCTCAATAACAACAGTCGAAGCAGAAAAATCCGG 3253500 29 100.0 37 NNNNNNNNNN ............................. GTAAAATGAGAAATAAAAGTAAACAAAAAGGTTTAGT 3253566 29 100.0 41 NNNNNNNNNN ............................. CTGAAACCCTCGGATTTAGTAACCGATTCTATGTCGAGTCT 3253636 29 100.0 38 NNNNNNNNNN ............................. AATCTAAAATATGTTCGTTAAAAGGGAGTGTGTAATTA 3253703 29 100.0 38 NNNNNNNNNN ............................. GTTTCTTATACAACTCTTAACTCCAAGCCCATTTTGGA 3253770 29 100.0 36 NNNNNNNNNN ............................. GTATAAAAAAAGAGTTAGAAGCATTAGACAAATGGA 3253835 29 100.0 38 NNNNNNNNNN ............................. TATAATTGGGATGGTCAGGTTTCTGATAAGGTTAATAA 3253902 29 100.0 37 NNNNNNNNNN ............................. TGTTTTTTAGTTTTCGTGATTCAAATGGTTCTTTGTT 3253968 29 100.0 36 NNNNNNNNNN ............................. AACTCATGTAACAAGTATTAAGACTTGCACCTTTAA 3254033 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 23 29 37 ATTTACATACCACTTAGTTAATATAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [191,185] Score: 0/0.18 # # Final direction: R [0,0.41 Confidence: MEDIUM] >NC_017179 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3499513 29 100.0 36 CCCTTCAATA ............................. CTCTCTACTAAAATTACTTCCACATATAGCTACAGA 3499578 29 100.0 39 TAGCTACAGA ............................. TGTACCTGGGTCTTTTATCTTACTTGTAAGTGTACTTCT 3499646 29 100.0 37 GTGTACTTCT ............................. ATTGCAGATAGGTCTGTGCCATCATTCGTGCTGTTAC 3499712 29 100.0 36 GTGCTGTTAC ............................. TGGGATGGATTTTGAAGCTTCTATGTCAAATGTACA 3499777 29 100.0 37 CAAATGTACA ............................. GAAACCTCTCTTTAAAATTATTCATAGAATTTATAAA 3499843 29 96.6 36 AATTTATAAA ............T................ ATTGTTGCTAGAAAACATTAAAATACATTACACATA 3499908 29 100.0 37 ATTACACATA ............................. GGCTGGACTTGTAATAGTTGTAACTAAAATTAGTGAA 3499974 29 100.0 39 AATTAGTGAA ............................. GGGTAGAATGAATCAAATAGCAAAAGTACTTTCCGGAAT 3500042 29 100.0 TTTCCGGAAT ............................. CCCAAATAAA ========== ====== ====== ====== ========== ============================= 9 29 37 ATTTATAACTAACTTAGTGTAATTTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:82.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [886,254] Score: 0.18/0.18 # # Final direction: F [0.59,0.27 Confidence: MEDIUM] >NC_017186 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 6438603 28 100.0 33 NNNNNNNNNN ........T................... GGGAGCACTCGCATGACGACCACGGAGCCGGCG 6438664 28 100.0 33 NNNNNNNNNN ............................ CTGGTTGATCCGGATGTCCCAGTCGTCCACCGC 6438725 28 100.0 33 NNNNNNNNNN ............................ CACGGTGGCGGTGGCCTGCTGATACTGGGCGTC 6438786 28 100.0 33 NNNNNNNNNN ............................ AGACGGTTGGGGCAACCTGAAGGCGGCCGGCCT 6438847 28 100.0 1 NNNNNNNNNN ..C..................GCTAGTA NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 5 28 33 GTTGTCCCCGCACGCGCGGGGCTGGTCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-12.70,-13.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [355,10] Score: 0.18/0.18 # # Final direction: R [0.59,0.74 Confidence: LOW] >NC_017186 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 6436784 20 100.0 39 NNNNNNNNNN ........A..C........ GTCCTGTCGTGTAGCGGGTGTCGTCGTCGTTGGGGACGT 6436843 20 100.0 40 NNNNNNNNNN .TT..C.............. GTCCCTGCCCGTGGCGGAACCTGATCGTCACCAAGCCGCT 6436903 20 100.0 41 NNNNNNNNNN ....AT.............. GTGCCGCGCCTTCGTCCCAGCTGGCCGGCTCGACGATATTT 6436964 20 100.0 38 NNNNNNNNNN ..................G. GTCCCAGGGAGATCGACACGTCGGACAGCGTTTCGCGG 6437022 20 100.0 40 NNNNNNNNNN .T.................. GTCCCGGAAGCCGGTTGAGCTTCGCGCCGCACCGTCCGTT 6437082 20 100.0 39 NNNNNNNNNN .G................C. GTCCGCAGGCCGACTACGAGAAGCAGAGCCCGCAGGAGC 6437141 20 100.0 41 NNNNNNNNNN ......T..........T.. GTCCGATCCCGCAGTAGCGACAGGTGTCGCCGTCGCGGTTT 6437202 20 100.0 41 NNNNNNNNNN .......A.G.A........ GTCCGCACACGATCGGCGGTTTCACCCGACCTTCGCGGTCG 6437263 20 100.0 41 NNNNNNNNNN .................... ATCCCGCATTGGCTAGATTGTTCTGGAAAGTCTGATCGTTG 6437324 20 100.0 41 NNNNNNNNNN .............T...... ATCCCGTCTCGAACGTCGTGGGCGAGACGACGTGCTCGTTG 6437385 20 100.0 41 NNNNNNNNNN .................T.. GTCCCGACTTCAAGCTGCGCCTGGTCACCCTCGGCGTGTCG 6437446 20 100.0 41 NNNNNNNNNN ........A........... GTCCGCCGTTCGGGTCGCACTCGTACGTGGGCAGATCGTCG 6437507 20 100.0 43 NNNNNNNNNN ...................T GGGTCCCGTCACCTGCCCGCCGGGCTACACCAGCCTGTTGTCG 6437570 20 100.0 42 NNNNNNNNNN ...........A..A..... GTCCGGACGGCGTCAAGAACTGGTACGACGAAGTGGCAGTCG 6437632 20 100.0 41 NNNNNNNNNN ....T..A............ GTCCCTACGTGTACGTTGGCGCCTACGGAACAGGAACGTCG 6437693 20 100.0 40 NNNNNNNNNN .................... GTCCCGCTCGGGCAGCTCAACCTCGCCACTGTCTACCTTG 6437753 20 100.0 1 NNNNNNNNNN .T...A.............. NNNNNNNNNN ========== ====== ====== ====== ========== ==================== 17 20 40 TCCCCGCGCACGCGGGGCTG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [11-9] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [55.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [635,95] Score: 0.18/0.18 # # Final direction: R [0.45,0.78 Confidence: LOW] >NC_017186 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 6441416 28 100.0 33 NNNNNNNNNN ..TA.......ACG.............. CACGATGCCGCGCTCGACGAACACCTCGTTCCC 6441477 28 100.0 33 NNNNNNNNNN ............................ CTCGGCCAGCACCCGGCGGAGGTTCCGGATACT 6441538 28 100.0 33 NNNNNNNNNN .........A.................. GATCGATTCGCTGAGGACCTCCGGCAGCACGAT 6441599 28 100.0 33 NNNNNNNNNN ............C..CT........... GGTGAAGGGCCTCTCCCCGGCCGGGCAGCGGTA 6441660 28 100.0 33 NNNNNNNNNN ............................ CCACACCGGCAAGCCCGAGGCGATCCTCACGCA 6441721 28 100.0 33 NNNNNNNNNN ........T....T.............. CGACACGACGGCGAGCCGGTCGTCGCGTTCCTT 6441782 28 100.0 1 NNNNNNNNNN .......................CC... NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 7 28 33 GTCGTCCCCGCGTACGCGGGGCTGGTCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-12.70,-13.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [5-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [35.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [58,502] Score: 0.18/0.18 # # Final direction: R [0.68,0.92 Confidence: LOW] >NC_017192 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1923285 30 100.0 35 TTACACCAAG .............................. CCATTTTTCGATAGTAACAGTTTTCTTTTCTTCCT 1923350 30 100.0 35 TTTTCTTCCT .............................. AACAGAGAGTTTATAGAAAAGCATTACGGAATAAA 1923415 30 100.0 34 ACGGAATAAA .............................. AGTTCTCATACTCATCTGGATCTGGATTAATCTG 1923479 30 100.0 34 GATTAATCTG .............................. TTATTTTATTTTGTTTTTCTGTTTTTTCTTTGCC 1923543 30 100.0 35 TTTCTTTGCC .............................. TTAGAAAAAGAAATCAATACGATTTATATATTAAC 1923608 30 100.0 36 ATATATTAAC .............................. TAACATTTTATGTTTACTGATTTCTAATTTTAAAAA 1923674 30 100.0 35 ATTTTAAAAA .............................. AAATCTTGTGCAGTTGCGATGGCTAATCGATCGAA 1923739 30 100.0 36 ATCGATCGAA .............................. TTCTCATAATAGTGTGTTAAAACTCGATAATGTATA 1923805 30 100.0 34 ATAATGTATA .............................. GTAGGACTAAAGATTACTGTTCTGACAATTGTCG 1923869 30 100.0 36 ACAATTGTCG .............................. AATATCTTTAATATTTGTGTATTGTAATAAATTTTA 1923935 30 100.0 36 ATAAATTTTA .............................. AGTTTTATTTTTATTACTTGGCTTTGTAATAAGTAA 1924001 30 100.0 34 TAATAAGTAA .............................. TTATGACTACTGCATCACAAGCAGCTGTTGAATA 1924065 30 100.0 34 CTGTTGAATA .............................. ATAGTGCTTTACTAAAATTTTCACTTACTCCCTT 1924129 30 100.0 36 TTACTCCCTT .............................. AAATAAAAGAGCCAGAATCTTTTATATTAAACTCAT 1924195 30 100.0 36 TTAAACTCAT .............................. CATTATTTTTGTATATGCATATAGAGTTAAACCCAT 1924261 30 100.0 36 TTAAACCCAT .............................. GATAGTAAATATACTTAACATTATAATAACTGTATG 1924327 30 100.0 34 TAACTGTATG .............................. AGAACACAATTCAAGAAATGGATACTTATGTCTT 1924391 30 100.0 36 CTTATGTCTT .............................. TAATGCTATTGTTAAAAATGAACCATACAAAGAGGA 1924457 30 100.0 37 ACAAAGAGGA .............................. CTTTTTTTTGCTTCCAATGGCTTCTATGACCTTTATT 1924524 30 100.0 35 GACCTTTATT .............................. AATTTAACTACGTTATTTGATGGAGCAATCAATTC 1924589 30 100.0 35 CAATCAATTC .............................. TTTTAGTTTTTGGTGTACTAATAAAATTATTTGTA 1924654 30 100.0 36 ATTATTTGTA .............................. ACCTGAAGCAATCTGAAAAGTATAAGAGTTAAATAA 1924720 30 100.0 37 AGTTAAATAA .............................. ATAAATGGATTCTTCCTAAGTTTGGCTCTATTGAAAT 1924787 30 100.0 36 CTATTGAAAT .............................. CCAGTTCCTGAACCACCATTTAAAGCACCATCTAAA 1924853 30 100.0 35 ACCATCTAAA .............................. AATAAAGCAAAAGGATTGAACGGAACAGTTATATT 1924918 30 100.0 35 CAGTTATATT .............................. GGTTTAGAAGAAAGTGGTTATTGGTGTCTTGTTCA 1924983 30 100.0 34 GTCTTGTTCA .............................. AGTATCAAATCTGATACTTATTTTTTATTTATAC 1925047 30 100.0 36 TTATTTATAC .............................. CTTCGTATTTATTCATATCAACCATACCATCTTTAT 1925113 30 100.0 34 CCATCTTTAT .............................. CTATTTCATAAGCATTATCGTAAAATTCTCTATT 1925177 30 100.0 35 ATTCTCTATT .............................. TCTCAAAGTAATTTTAATGTTGTATTGCAAAATGG 1925242 30 100.0 34 TGCAAAATGG .............................. TAAATGGATATAAAGAAATAAACAAAGAAGAGTG 1925306 30 100.0 AAGAAGAGTG .............................. TAAGAAAAAA ========== ====== ====== ====== ========== ============================== 32 30 35 GTTTCAATACATTATATGTTTAAGTTCAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [66.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [113,167] Score: 0/0.18 # # Final direction: R [0,4.77 Confidence: HIGH] >NC_017200 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================== ====== 1568487 26 100.0 28 NNNNNNNNNN ..AGT..CA................. ACCAGTAGCCCCTGCTGGCCCTTGAATA 1568541 26 100.0 28 NNNNNNNNNN ................GT........ GCCGGTAGCCCCCGCTGGTCCTTGAATA 1568595 26 100.0 28 NNNNNNNNNN .......................... GCCAGTAGCCCCCGCTGGCCCTTGAATG 1568649 26 100.0 28 NNNNNNNNNN ...........AGT............ GCCAGTAGCCCCTGCTGGTCCTTGAACA 1568703 26 100.0 19 NNNNNNNNNN .......................... GCCAGTAGCCCCCGCCGGT 1568748 26 100.0 28 NNNNNNNNNN ........C..AGT...G........ GCCGGTAGCCCCCGCTGGTCCTTGAATA 1568802 26 100.0 19 NNNNNNNNNN .......................... CCCCGCTGGCCCTTGAACG 1568847 26 100.0 28 NNNNNNNNNN .......................... GCCAGTAGCCCCTGCTGGTCCTTGAACA 1568901 26 100.0 28 NNNNNNNNNN .......................... GCCAGTAGCCCCTGCTGGCCCTTGAACA 1568955 26 100.0 28 NNNNNNNNNN ................GT........ GCCGGTAGCCCCCGCTGGCCCTTGAACA 1569009 26 100.0 28 NNNNNNNNNN .......................... GCCAGTAGCCCCCACTGGCCCTTGAACG 1569063 26 100.0 28 NNNNNNNNNN .......................... GCCGGTAGCCCCTGCTGGCCCTTGAACG 1569117 26 100.0 28 NNNNNNNNNN .......................... GCCAGTAGCCCCCGCTGGCCCTTGAACA 1569171 26 100.0 28 NNNNNNNNNN ...........AGT............ GCCAGTAGCCCCTGCTGGTCCTTGAACA 1569225 26 100.0 28 NNNNNNNNNN .......................... GCCAGTAGCCCCCGCTGGCCCTTGAACG 1569279 26 100.0 28 NNNNNNNNNN .......................... GCCGGTAGCCCCTGCTGGCCCTTGAATA 1569333 26 100.0 19 NNNNNNNNNN ........C.......GT.....G.. ACCTTGAGCCCCCGCTGGT 1569378 26 100.0 19 NNNNNNNNNN ........C..AGT...G........ CCCCGCCGGTCCTTGAGGC 1569423 26 100.0 1 NNNNNNNNNN ..AGT..CG..AGT...G..G..... NNNNNNNNNN ========== ====== ====== ====== ========== ========================== 19 26 26 CCTTGAGGTCCTTGAGCACCAGTAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.20,-2.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [15-22] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [618,731] Score: 0/0.18 # # Final direction: R [0.41,0.74 Confidence: LOW] >NC_017203 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 175403 32 100.0 34 NNNNNNNNNN ................................ ACAAGATACGAGAATTTAATGACGTCACCCACAT 175469 32 100.0 34 NNNNNNNNNN ................................ TATTGTTACACCTTTAGAGTATCCGAGTAAAAAA 175535 32 100.0 35 NNNNNNNNNN ................................ ACAATGGGAAAGTGTTAGGTTATGCACGTTTTAAA 175602 32 100.0 32 NNNNNNNNNN .......................A........ GAAGATAGTAGAAGAAATCAAAAAAAGTGTAT 175666 32 100.0 33 NNNNNNNNNN .........T.........T...A........ TTTGTTGCTCCAGTCGTTATGATCGTCTTTGCA 175731 32 100.0 33 NNNNNNNNNN .......T.T...................... TAGGAGTTATTAATGGCTTTAGATGTTAGACCA 175796 32 100.0 34 NNNNNNNNNN .........T.........T.A.......... TACCTCGGGTTTATATTTATCTGGAATGCCCATA 175862 32 100.0 33 NNNNNNNNNN ........CT...................... TTTGCAACTAGCTCAATTGTTTTTCCGTTTTCA 175927 32 100.0 34 NNNNNNNNNN ....................A........... TACCTCGGGTTTATATTTATCTGGAACGCTCATA 175993 32 100.0 33 NNNNNNNNNN .........T.A.......T............ ATAATATCACAATTTTGACAAAATTCAGTCATG 176058 32 100.0 1 NNNNNNNNNN A.T.................T........... NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 11 32 33 GTCGCACCTCATATAGGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.12%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [325,85] Score: 0.18/0.18 # # Final direction: F [5.09,0.37 Confidence: HIGH] >NC_017214 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 209075 36 100.0 35 NNNNNNNNNN T.....................A.A........... GCCTCCTGATGGATCTCCACGACGTTGCTGGCCCT 209146 36 100.0 35 NNNNNNNNNN T................................... GCCATCCCGACTGTGGCGGCGGCGTTCGGTGTCGC 209217 36 100.0 36 NNNNNNNNNN .................................... GACAGTGCGAACACAGTGCAGTCGGTGACGATCGCG 209289 36 100.0 36 NNNNNNNNNN .................................... TCGGTCTTCTTGAGCTGGTCGGTGAGTGTCTTGAGC 209361 36 100.0 36 NNNNNNNNNN .................................... GCAACGCCTTCGTTCGCCTCGTGGACTATCGCGGCC 209433 36 100.0 39 NNNNNNNNNN .................................... CAGGTTCTCGAGGATGCTCACTATTTCCGTGAGGATGAT 209508 36 100.0 38 NNNNNNNNNN .................................... CTATACCCGTATGCAATGCTGTGCGCGTTGGATGCAAG 209582 36 100.0 36 NNNNNNNNNN .................................... TGGCGCGAGCAGTATCACCACGTGGCTGCTCAACCG 209654 36 100.0 36 NNNNNNNNNN .................................... AACGGTTCGATGGTTCGCACAGTGAGTTGTTCACTC 209726 36 100.0 35 NNNNNNNNNN .................................... TTCGTCTCCTCCCTGCGCCGCTGATTGACCTGTTT 209797 36 100.0 34 NNNNNNNNNN .................................... ATTTCAGGCGGCATCAGACCTTGCGGCTGGGATT 209867 36 100.0 38 NNNNNNNNNN .................................... GCGTGTGGTGGAAAAACCAGCCCGTCACCGAAGCGGCC 209941 36 100.0 34 NNNNNNNNNN .................................... TCGCAGGTGAATATCGGTGGCGGCGGCTTGTCGT 210011 36 100.0 34 NNNNNNNNNN .................................... CGGATAGTATCCTGCGTCGCGTCTCCAATGGCGA 210081 36 100.0 38 NNNNNNNNNN .................................... CTGACAGCATCCTCTCATTCCTCTCGAACGGCGAATAC 210155 36 100.0 34 NNNNNNNNNN .................................... TGTTCGCTTTGATGCGTGTGATTGAGTTCGGCTT 210225 36 100.0 39 NNNNNNNNNN .................................... TTCGGCGCGTGTTCCTCCGCCGTTGCCGTTGTGGTGGGC 210300 36 100.0 35 NNNNNNNNNN .................................... GAGGTCATGGTGAAGTCGCGTTCGGTGCCGGTCTT 210371 36 100.0 37 NNNNNNNNNN .................................... CCGCCTCCCACTCCGCCACGCTGAGCGCCATATCGTC 210444 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 20 36 36 CCCTCAATGAAGCTCCGAAGCCGAGACTTCGGAGAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [10,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.30,-7.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [65.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [30,181] Score: 0.18/0.18 # # Final direction: R [0.64,0.96 Confidence: LOW] >NC_017215 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1516463 36 100.0 35 NNNNNNNNNN T.....................A.A........... GCCTCCTGATGGATCTCCACGACGTTGCTGGCCCT 1516534 36 100.0 35 NNNNNNNNNN T................................... GCCATCCCGACTGTGGCGGCGGCGTTCGGTGTCGC 1516605 36 100.0 36 NNNNNNNNNN .................................... GACAGTGCGAACACAGTGCAGTCGGTGACGATCGCG 1516677 36 100.0 36 NNNNNNNNNN .................................... TCGGTCTTCTTGAGCTGGTCGGTGAGTGTCTTGAGC 1516749 36 100.0 36 NNNNNNNNNN .................................... GCAACGCCTTCGTTCGCCTCGTGGACTATCGCGGCC 1516821 36 100.0 39 NNNNNNNNNN .................................... CAGGTTCTCGAGGATGCTCACTATTTCCGTGAGGATGAT 1516896 36 100.0 38 NNNNNNNNNN .................................... CTATACCCGTATGCAATGCTGTGCGCGTTGGATGCAAG 1516970 36 100.0 36 NNNNNNNNNN .................................... TGGCGCGAGCAGTATCACCACGTGGCTGCTCAACCG 1517042 36 100.0 36 NNNNNNNNNN .................................... AACGGTTCGATGGTTCGCACAGTGAGTTGTTCACTC 1517114 36 100.0 35 NNNNNNNNNN .................................... TTCGTCTCCTCCCTGCGCCGCTGATTGACCTGTTT 1517185 36 100.0 34 NNNNNNNNNN .................................... ATTTCAGGCGGCATCAGACCTTGCGGCTGGGATT 1517255 36 100.0 38 NNNNNNNNNN .................................... GCGTGTGGTGGAAAAACCAGCCCGTCACCGAAGCGGCC 1517329 36 100.0 34 NNNNNNNNNN .................................... TCGCAGGTGAATATCGGTGGCGGCGGCTTGTCGT 1517399 36 100.0 34 NNNNNNNNNN .................................... CGGATAGTATCCTGCGTCGCGTCTCCAATGGCGA 1517469 36 100.0 38 NNNNNNNNNN .................................... CTGACAGCATCCTCTCATTCCTCTCGAACGGCGAATAC 1517543 36 100.0 34 NNNNNNNNNN .................................... TGTTCGCTTTGATGCGTGTGATTGAGTTCGGCTT 1517613 36 100.0 39 NNNNNNNNNN .................................... TTCGGCGCGTGTTCCTCCGCCGTTGCCGTTGTGGTGGGC 1517688 36 100.0 35 NNNNNNNNNN .................................... GAGGTCATGGTGAAGTCGCGTTCGGTGCCGGTCTT 1517759 36 100.0 37 NNNNNNNNNN .................................... CCGCCTCCCACTCCGCCACGCTGAGCGCCATATCGTC 1517832 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 20 36 36 CCCTCAATGAAGCTCCGAAGCCGAGACTTCGGAGAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [10,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.30,-7.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [65.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [30,181] Score: 0.18/0.18 # # Final direction: R [0.64,0.96 Confidence: LOW] >NC_017216 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1511474 36 100.0 35 NNNNNNNNNN T.....................A.A........... GCCTCCTGATGGATCTCCACGACGTTGCTGGCCCT 1511545 36 100.0 35 NNNNNNNNNN T................................... GCCATCCCGACTGTGGCGGCGGCGTTCGGTGTCGC 1511616 36 100.0 36 NNNNNNNNNN .................................... GACAGTGCGAACACAGTGCAGTCGGTGACGATCGCG 1511688 36 100.0 36 NNNNNNNNNN .................................... TCGGTCTTCTTGAGCTGGTCGGTGAGTGTCTTGAGC 1511760 36 100.0 36 NNNNNNNNNN .................................... GCAACGCCTTCGTTCGCCTCGTGGACTATCGCGGCC 1511832 36 100.0 39 NNNNNNNNNN .................................... CAGGTTCTCGAGGATGCTCACTATTTCCGTGAGGATGAT 1511907 36 100.0 38 NNNNNNNNNN .................................... CTATACCCGTATGCAATGCTGTGCGCGTTGGATGCAAG 1511981 36 100.0 36 NNNNNNNNNN .................................... TGGCGCGAGCAGTATCACCACGTGGCTGCTCAACCG 1512053 36 100.0 36 NNNNNNNNNN .................................... AACGGTTCGATGGTTCGCACAGTGAGTTGTTCACTC 1512125 36 100.0 35 NNNNNNNNNN .................................... TTCGTCTCCTCCCTGCGCCGCTGATTGACCTGTTT 1512196 36 100.0 34 NNNNNNNNNN .................................... ATTTCAGGCGGCATCAGACCTTGCGGCTGGGATT 1512266 36 100.0 38 NNNNNNNNNN .................................... GCGTGTGGTGGAAAAACCAGCCCGTCACCGAAGCGGCC 1512340 36 100.0 34 NNNNNNNNNN .................................... TCGCAGGTGAATATCGGTGGCGGCGGCTTGTCGT 1512410 36 100.0 34 NNNNNNNNNN .................................... CGGATAGTATCCTGCGTCGCGTCTCCAATGGCGA 1512480 36 100.0 38 NNNNNNNNNN .................................... CTGACAGCATCCTCTCATTCCTCTCGAACGGCGAATAC 1512554 36 100.0 34 NNNNNNNNNN .................................... TGTTCGCTTTGATGCGTGTGATTGAGTTCGGCTT 1512624 36 100.0 39 NNNNNNNNNN .................................... TTCGGCGCGTGTTCCTCCGCCGTTGCCGTTGTGGTGGGC 1512699 36 100.0 35 NNNNNNNNNN .................................... GAGGTCATGGTGAAGTCGCGTTCGGTGCCGGTCTT 1512770 36 100.0 37 NNNNNNNNNN .................................... CCGCCTCCCACTCCGCCACGCTGAGCGCCATATCGTC 1512843 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 20 36 36 CCCTCAATGAAGCTCCGAAGCCGAGACTTCGGAGAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [10,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.30,-7.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [65.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [72,181] Score: 0.18/0.18 # # Final direction: R [0.64,0.96 Confidence: LOW] >NC_017217 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1517116 36 100.0 35 NNNNNNNNNN T.....................A.A........... GCCTCCTGATGGATCTCCACGACGTTGCTGGCCCT 1517187 36 100.0 35 NNNNNNNNNN T................................... GCCATCCCGACTGTGGCGGCGGCGTTCGGTGTCGC 1517258 36 100.0 36 NNNNNNNNNN .................................... GACAGTGCGAACACAGTGCAGTCGGTGACGATCGCG 1517330 36 100.0 36 NNNNNNNNNN .................................... TCGGTCTTCTTGAGCTGGTCGGTGAGTGTCTTGAGC 1517402 36 100.0 36 NNNNNNNNNN .................................... GCAACGCCTTCGTTCGCCTCGTGGACTATCGCGGCC 1517474 36 100.0 39 NNNNNNNNNN .................................... CAGGTTCTCGAGGATGCTCACTATTTCCGTGAGGATGAT 1517549 36 100.0 38 NNNNNNNNNN .................................... CTATACCCGTATGCAATGCTGTGCGCGTTGGATGCAAG 1517623 36 100.0 36 NNNNNNNNNN .................................... TGGCGCGAGCAGTATCACCACGTGGCTGCTCAACCG 1517695 36 100.0 36 NNNNNNNNNN .................................... AACGGTTCGATGGTTCGCACAGTGAGTTGTTCACTC 1517767 36 100.0 35 NNNNNNNNNN .................................... TTCGTCTCCTCCCTGCGCCGCTGATTGACCTGTTT 1517838 36 100.0 34 NNNNNNNNNN .................................... ATTTCAGGCGGCATCAGACCTTGCGGCTGGGATT 1517908 36 100.0 38 NNNNNNNNNN .................................... GCGTGTGGTGGAAAAACCAGCCCGTCACCGAAGCGGCC 1517982 36 100.0 34 NNNNNNNNNN .................................... TCGCAGGTGAATATCGGTGGCGGCGGCTTGTCGT 1518052 36 100.0 34 NNNNNNNNNN .................................... CGGATAGTATCCTGCGTCGCGTCTCCAATGGCGA 1518122 36 100.0 38 NNNNNNNNNN .................................... CTGACAGCATCCTCTCATTCCTCTCGAACGGCGAATAC 1518196 36 100.0 34 NNNNNNNNNN .................................... TGTTCGCTTTGATGCGTGTGATTGAGTTCGGCTT 1518266 36 100.0 39 NNNNNNNNNN .................................... TTCGGCGCGTGTTCCTCCGCCGTTGCCGTTGTGGTGGGC 1518341 36 100.0 35 NNNNNNNNNN .................................... GAGGTCATGGTGAAGTCGCGTTCGGTGCCGGTCTT 1518412 36 100.0 37 NNNNNNNNNN .................................... CCGCCTCCCACTCCGCCACGCTGAGCGCCATATCGTC 1518485 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 20 36 36 CCCTCAATGAAGCTCCGAAGCCGAGACTTCGGAGAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [10,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.30,-7.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [65.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [171,181] Score: 0/0.18 # # Final direction: R [0.64,0.78 Confidence: LOW] >NC_017218 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================= ====== 1654072 33 100.0 36 GCACTCCAAA ................................. GACCTCGCGGACCTCATCCTCGACACCATCAGCAGG 1654141 33 100.0 33 CATCAGCAGG ................................. GGTGGCGGGAAACATCATCGGTCGTGGACAAAT 1654207 33 100.0 35 GTGGACAAAT ................................. TGCGCCATATCCCCTTTGATCTGCCCGTCAAGGCG 1654275 33 100.0 35 CGTCAAGGCG ................................. CGTTCGACTGCGCGGCGATGTGCGCCGTGTACAAG 1654343 33 100.0 35 CGTGTACAAG ................................. CTTGGGTTCCGCTCATGCGTTTACTTTCCTTCTTG 1654411 33 100.0 36 TTCCTTCTTG ................................. CCAGACACCACGACCCCGGCTGCGGTACACGATACG 1654480 33 100.0 33 ACACGATACG ................................. TGATCGCCGTGATCACGGAGGTCACCACGGTTA 1654546 33 100.0 36 ACCACGGTTA ................................. TGCCGGTCAGCAGGTTCGCCATGCCCTCGCCGTCCA 1654615 33 100.0 35 TCGCCGTCCA ................................. TGACGAATGGCGGAATCCACTGCCTACGCCTCAAA 1654683 33 100.0 35 ACGCCTCAAA ................................. GTGGTCGGCGGGCAGAAGCCCTTCTGGTCGCTGAG 1654751 33 100.0 GGTCGCTGAG ................................. TTTTCGGGCTTTTTTATTTGGTTTGTGGGGATAA ========== ====== ====== ====== ========== ================================= 11 33 34 ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [7,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-8.20,-8.40] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [46.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [124,1711] Score: 0.18/0.18 # # Final direction: R [0.37,4.95 Confidence: HIGH] >NC_017218 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================= ====== 1657368 33 100.0 34 NNNNNNNNNN ....G.CAAA..A.A.................. AGGTTGGTGATGCGGCGGCGCTGTTCGAGGATGC 1657435 33 100.0 36 NNNNNNNNNN ................................. GTAGCTTTCCTCGACGTGCCCGCCGAACCGGCCGGG 1657504 33 100.0 36 NNNNNNNNNN ................................. GCGGGGCGCGATCGCATCCATGCAGTTCGGCGTGGC 1657573 33 100.0 35 NNNNNNNNNN ................................. GCGCTTGTTCGTGTTCGCTGTTCCCGCCACCGCGA 1657641 33 100.0 35 NNNNNNNNNN ................................. CGGCTCATCTCCGACGAGGTGGCGCAGGCCAATGA 1657709 33 100.0 34 NNNNNNNNNN ................................. CATACACCGTCCTTGGCTGGGTTCGACTGCAAGG 1657776 33 100.0 37 NNNNNNNNNN ................................. TCCATGCTCGGTGTCCAGATGCTCTCCGGATATGATG 1657846 33 100.0 35 NNNNNNNNNN ................................. CGGGCATATCAATATCCGTCGTGCCCGAAGCGCTG 1657914 33 100.0 34 NNNNNNNNNN ................................. GTTTACGTTCCCCGGTTGCGATTTGTTTCACGTG 1657981 33 100.0 33 NNNNNNNNNN ................................. CAATCGGCAGACCGTATCCTCGGTCGTTAATCT 1658047 33 100.0 34 NNNNNNNNNN ................................. AAGTCAACCTCAGCCGCATTGTAACAGGAGGTGA 1658114 33 100.0 33 NNNNNNNNNN ................................. GGAAGCAAGACCGCGCCATGGGCCACCCGACTT 1658180 33 100.0 33 NNNNNNNNNN ................................. CTCCGGTTTGTTCCATACGGTCACGCCACGTTC 1658246 33 100.0 36 NNNNNNNNNN ................................. TTGCGCCGTGGGTACCGACGTGACGCCGAGCGCGTT 1658315 33 100.0 35 NNNNNNNNNN ................................. GTTTTAATGTGATTTAATGGGACTGTTGCTGAATT 1658383 33 100.0 33 NNNNNNNNNN ................................. GGGAGGTTGCCACGCCCTGCTGTTCCATCTCGT 1658449 33 100.0 34 NNNNNNNNNN ................................. GATATGATGCAATGTATCATCCAGCCCAATGGAG 1658516 33 100.0 35 NNNNNNNNNN ................................. AAGTCGCCACGTCGAAATTCGGACAGTTTCTACGC 1658584 33 100.0 34 NNNNNNNNNN ................................. CTATTTCAACATGCGCTACCGGACGCTGGACATG 1658651 33 100.0 33 NNNNNNNNNN ................................. TTACCGGCCAAACCCGCCTCACGATCCATGTCT 1658717 33 100.0 35 NNNNNNNNNN ................................. TTGCCGTCGATGGTCGGGGAGCCGTGCCCGGTGAG 1658785 33 100.0 35 NNNNNNNNNN ................................. CCGGTCGATGCCGGTCGTGCTTGTCGGTTTGTCGA 1658853 33 100.0 33 NNNNNNNNNN ................................. CACCAAGCTCCGCGCGTTGATTCTCGCGGTGTT 1658919 33 100.0 34 NNNNNNNNNN ................................. CGAAGGCACGCGCCCAACCCGCCGCGTCCTGGCT 1658986 33 100.0 34 NNNNNNNNNN ................................. GCAACGACTGTTGGCTGGACATGCCGGGATGCAC 1659053 33 100.0 34 NNNNNNNNNN ................................. CCAATGCGGAGAGGATACGGCCTGGGATGCTGGA 1659120 33 100.0 34 NNNNNNNNNN ................................. TGAGCTGGCCCGCATACCAGAACGCCAAGGTGGA 1659187 33 100.0 33 NNNNNNNNNN ................................. TGCCAGTGGTGCTCATGCCCGGCGCGGCCGCAG 1659253 33 100.0 35 NNNNNNNNNN ................................. CGGGTCGGTGTCACGGCTGATGCAATCCAAGTGGA 1659321 33 100.0 35 NNNNNNNNNN ................................. CCGGCCACGCCGCTGCCGGTGGGAGCACCCTGGGT 1659389 33 100.0 35 NNNNNNNNNN ................................. TTCTTCGGCGTCCCGTTGATGGCTTTGCTGGATGA 1659457 33 100.0 34 NNNNNNNNNN ................................. TCGCGCAACGCTTCGGCCTCGGAACGATCCAGAG 1659524 33 100.0 36 NNNNNNNNNN ................................. CTGATTGCCGGCCCAGGCGTTGCTATCGTTCCTGCG 1659593 33 100.0 35 NNNNNNNNNN ................................. GTGGCAGGCCAAGGACGCGAGAAACGGCATCGTGG 1659661 33 100.0 33 NNNNNNNNNN ................................. TAGCGTCAACGAGCATGTCCGCCATGCTCAACG 1659727 33 100.0 35 NNNNNNNNNN ................................. CTGCCGAAGGCGGCGGCTTTGCCGGTGACCTTGCT 1659795 33 100.0 1 NNNNNNNNNN ................................. NNNNNNNNNN ========== ====== ====== ====== ========== ================================= 37 33 34 ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [7,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-8.20,-8.40] Score: 0/0.37 # Array degeneracy analysis suggestion: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [91,442] Score: 0.18/0.18 # # Final direction: R [0.37,5.09 Confidence: HIGH] >NC_017218 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================= ====== 561106 33 100.0 35 TTCAACGCGT ................................. AACGCGTACGACAGGGAGACGAACCCGAAACCCGA 561174 33 100.0 34 CGAAACCCGA ................................. TGCACGACCGGGACATGAACGCCGCCCTGAACAT 561241 33 100.0 33 CCCTGAACAT ................................. GCCAACGTGGGACGCATCCCCAACTTCGACAAG 561307 33 100.0 35 CTTCGACAAG ................................. AAACCGGGACGCAACCTCACCGCATGGCAGGCCGT 561375 33 100.0 33 GGCAGGCCGT ................................. TACGCGTCAATGTACGGCAAAGGCGACGTGTAT 561441 33 97.0 34 CGACGTGTAT ...................A............. TCGTCAAGCAGGGTCTTCAAAATCACACCCGGAT 561508 33 100.0 33 ACACCCGGAT ................................. CTTTCATCTGATTGGAACGACGCTTCCGATTCT 561574 33 100.0 TTCCGATTCT ................................. AGGTACAGCC ========== ====== ====== ====== ========== ================================= 8 33 33 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [6,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-8.40,-8.20] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [60.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [313,544] Score: 0/0.18 # # Final direction: F [5.18,0.37 Confidence: HIGH] >NC_017218 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================= ====== 561712 33 100.0 34 AAATCTACTA ................................. AGTGCTTTCCTGTCCTTGTCAGCAGGCATCGGAC 561779 33 100.0 34 GGCATCGGAC ................................. GTCCACCCACTGGTCGATGGCGCCGTCCGAACCG 561846 33 97.0 36 GTCCGAACCG ....A............................ GTAAATCTCAGGTTGCGCGAAAACACATGTTTCGAC 561915 33 97.0 35 ATGTTTCGAC ....A............................ TGGCTCGCCCACAACTGGTACTAAGGAGCGGGACA 561983 33 97.0 35 GAGCGGGACA ............T.................... CTGTACGGCAAGGCTCAGACCGGCAGCGAGGGCTG 562051 33 100.0 GCGAGGGCTG ................................. CAAGCCCCCATACCCCGCGCAGCCCTCAAATCCAGC ========== ====== ====== ====== ========== ================================= 6 33 34 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [6,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-8.40,-8.20] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [41.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [919,67] Score: 0.18/0.18 # # Final direction: F [5.36,0.37 Confidence: HIGH] >NC_017271 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 4595922 28 100.0 32 NNNNNNNNNN ............................ CCCACCGGCTGGCGGGCGGCGAGGGCGGCTTG 4595982 28 100.0 32 NNNNNNNNNN ............................ AGACTGATCACGTGGTTGAGCAGTGCGGCTTT 4596042 28 100.0 32 NNNNNNNNNN ............................ TGCGTCGGGATGTTGCTGACGGTGCCGTTAGA 4596102 28 100.0 32 NNNNNNNNNN ............................ AGCAGATCGGCGCGCATCTTCTCGATGAATTC 4596162 28 100.0 32 NNNNNNNNNN ............................ GTCTGGCAATCGAGAGGATCAGCGGTGAGCCA 4596222 28 100.0 32 NNNNNNNNNN ............................ AAGCGCGCGACTGCTTCAGTCAAACCACTCAT 4596282 28 100.0 32 NNNNNNNNNN ............................ ACGGTAGCTCGGATGGTCGGCAGCGACGAGGT 4596342 28 100.0 32 NNNNNNNNNN ............................ TGAGCGACGTGCAGGGCCTTGAGCGCCGGATC 4596402 28 100.0 32 NNNNNNNNNN ............................ GGGGGCTTTGAGCCGGTTTCCCCTGACGTCTG 4596462 28 100.0 32 NNNNNNNNNN ............................ AAGCTGTCCAACGGCACCGTCAGCAACATCCC 4596522 28 100.0 32 NNNNNNNNNN ............................ TTGCTCGCCCCGATCGCCACGATCTTGGTGTT 4596582 28 100.0 32 NNNNNNNNNN ............................ ACATCGGCGGCAGGTGCGGCGGCTACAGCAGC 4596642 28 100.0 32 NNNNNNNNNN ............................ ACCACAAAGCCGCTCGTTTCTTATTGCTGTAC 4596702 28 100.0 32 NNNNNNNNNN ............................ GGCACCAGATAGGGATCGGTGAAGGCGCCTCC 4596762 28 100.0 32 NNNNNNNNNN ............................ TACATCGGCCGGCCAGGCATGATTACCCAGGC 4596822 28 100.0 32 NNNNNNNNNN ............................ TTGTTGAAAAAGTAGCCCTCGGTCAGGCGCAC 4596882 28 100.0 32 NNNNNNNNNN ............................ TGGCAGAAAAATGATAACTACCTATCGAACAG 4596942 28 100.0 32 NNNNNNNNNN ............................ TTCGCCAGAATCGGTATTCAGGTGATGGATTG 4597002 28 100.0 32 NNNNNNNNNN ............................ AGAAGACGATTCAGGACGAAGAAGCGTGATTC 4597062 28 100.0 32 NNNNNNNNNN ............................ CTCTCATTGGTGCGCGGCATTAGGCGGCCTCG 4597122 28 100.0 32 NNNNNNNNNN ............................ GCGACAGGGACGCCGCGTTGTCGTAGAGCCAG 4597182 28 100.0 32 NNNNNNNNNN ............................ AACTGCATCGAGCTGCGCGGATAGGGCGTCCA 4597242 28 100.0 32 NNNNNNNNNN ............................ GCCTCAGGTGACATGATGCCGGACGGCATGCG 4597302 28 100.0 32 NNNNNNNNNN ............................ ATCTCGCGCATCCTGTCGGGCCATTGCGATCC 4597362 28 100.0 32 NNNNNNNNNN ............................ ACAACCAGCGGAATCACGCGGCGTTGGTATAT 4597422 28 100.0 32 NNNNNNNNNN ............................ TACTGTGACGGTGAGAGCTGCAGAAGGGTCCT 4597482 28 100.0 32 NNNNNNNNNN ............................ TCGCTTGCGCGCACGTGGCTGGCTGCGTTCGC 4597542 28 100.0 32 NNNNNNNNNN ............................ AAAAAGGAACGGCGCAGGAGTGCATCGAGCTT 4597602 28 100.0 32 NNNNNNNNNN ............................ CACTGGATGCCGCTGCCGGAGCCACCGAAATG 4597662 28 100.0 32 NNNNNNNNNN ............................ AGGCGGCGAGGCGATCATCTACAGCGACGGCA 4597722 28 100.0 32 NNNNNNNNNN ............................ AGCACGGCAACAACCACGCCAGCTACAAAAGA 4597782 28 100.0 32 NNNNNNNNNN ............................ AGACAAGGATGCGTGTTCCATCCTTCGGCGCA 4597842 28 100.0 32 NNNNNNNNNN ............................ AGTGGGCGTGAGCGTGACGCCACGGCGGCCGG 4597902 28 100.0 32 NNNNNNNNNN ............................ TGCCGAGCGGCCGGCGCATCATGAGTGCTGGC 4597962 28 100.0 32 NNNNNNNNNN ............................ ACCAGAATGCGCTGGTGCTTGTTGATGATCCA 4598022 28 100.0 32 NNNNNNNNNN ............................ AGCTGGTGCCGGCGCAGCTGCTGCCGTTCCTG 4598082 28 100.0 32 NNNNNNNNNN ............................ ACAGCAGCCCAACCGGATGGCCTTCCTTCGTG 4598142 28 100.0 32 NNNNNNNNNN ............................ TTGTGGGCACGGACGAGGCGAAGCTGATCACC 4598202 28 100.0 32 NNNNNNNNNN ............................ AGCAAAAGCACCATTGGATTGAACATAGCGAA 4598262 28 100.0 32 NNNNNNNNNN ............................ CGAACGGTCTGGTTTTCCAGTCGAAGGCGCGC 4598322 28 100.0 32 NNNNNNNNNN ............................ GAGCGCAAAGCGCGGTGACTTCTTCGAACGAT 4598382 28 100.0 32 NNNNNNNNNN ............................ GCGGAAATCGATCGCAGCACAACGCACGCATC 4598442 28 100.0 32 NNNNNNNNNN ............................ ACTGATCCCACTTATACTCCTTCGCGCGATCG 4598502 28 100.0 31 NNNNNNNNNN ............................ GGAGTCGGGGGAGCGGTGGGGCATGGGTGGG 4598561 28 100.0 32 NNNNNNNNNN ............................ AGCGAGACGCGCGAGGTCGAGCGGGAGCTAGC 4598621 28 100.0 32 NNNNNNNNNN ............................ ACCGCCGTGCTGGCGGCCAGCTGCACCGTCTC 4598681 28 100.0 32 NNNNNNNNNN ............................ GTCATGGACGGTGCGCACATCCACGTGTGGTA 4598741 28 100.0 32 NNNNNNNNNN ............................ TGGTCGCGGACTCACCACGACAGCGGTTCCCA 4598801 28 100.0 32 NNNNNNNNNN ............................ ACAAGGGCTACCACATGAAGGTGGCCGAGGGT 4598861 28 100.0 32 NNNNNNNNNN ............................ TTTCGGCCGATCTTTACCCCCTCTTCCAAGCC 4598921 28 100.0 32 NNNNNNNNNN ............................ CAGGGCTGCCGATAACTATCGACCAGAAGAGC 4598981 28 100.0 32 NNNNNNNNNN ..............G............. TTGATACGAAATACCTGCTCAAGGAGGAAGAA 4599041 28 100.0 32 NNNNNNNNNN ............................ TGACGTGGGAAGAAGACCAACGAAGCCCGGCG 4599101 28 100.0 32 NNNNNNNNNN ............................ AGGCCATGAAGGCGCAGATGCTGCTGGCCATC 4599161 28 100.0 32 NNNNNNNNNN ...A........................ GCCGACAGCGCCGCGCCCAACCTCACGCAGTG 4599221 28 100.0 32 NNNNNNNNNN ............................ GCCAGCAATGCGCGGTCGTCCGAGCTGGCGCA 4599281 28 100.0 32 NNNNNNNNNN ............................ AGACGTTGTGCGGCTTCCCTTTCCACTTCAAC 4599341 28 100.0 32 NNNNNNNNNN ............................ ACTAGCAGACACGGCGCAGTGATGCCGGTCAC 4599401 28 100.0 32 NNNNNNNNNN ................A........... TTGCTTGATGTCATTGAGGTCCGCACTGATGC 4599461 28 100.0 33 NNNNNNNNNN ............................ GGGTAGTGATGAGGCCAAACATGATTGCGAGGT 4599522 28 100.0 32 NNNNNNNNNN ............................ GCCTCGACGATGCGCGTCTCAGTTGCCGGCAG 4599582 28 100.0 32 NNNNNNNNNN ............................ ATGATTTGGTGGGACCAGGGCGTGTGGTACAG 4599642 28 100.0 32 NNNNNNNNNN ............................ ATCCGCAAGGCCGGCGAATCCGCCGTCAATCC 4599702 28 100.0 32 NNNNNNNNNN ............................ TGGTGCCAAAACGTGCCCAGCAACTATTGGAC 4599762 28 100.0 32 NNNNNNNNNN ............................ ACCAGGGGCTGGCGCAGTTTCGGGGGTTCGAT 4599822 28 100.0 32 NNNNNNNNNN ............................ AACCCTGGCGGCCCTGGCCAACCGTGGATCGT 4599882 28 100.0 32 NNNNNNNNNN ............................ TCGGGCATGACAAGCAAGCCCTCAATTCGTTC 4599942 28 100.0 32 NNNNNNNNNN ............................ AGAGATGCACGCCCCGGCATCAAGCACATCGA 4600002 28 100.0 32 NNNNNNNNNN ............................ TTCAAGAACCCGAATGGTGTACTGCGCACCTA 4600062 28 100.0 32 NNNNNNNNNN ............................ TAGAACGGTTAGGCCAAAGCGGATTAGGGTTC 4600122 28 100.0 32 NNNNNNNNNN ............................ AGCGGCACCATCGTCCACGTCACGCGTCCACA 4600182 28 100.0 32 NNNNNNNNNN ............................ ACGCCGCATGGCTTGAGTACCGCACGACAGGG 4600242 28 100.0 32 NNNNNNNNNN ............................ CTGGGTGTTGTTCGCTTCTTCCACGACAGCAA 4600302 28 100.0 32 NNNNNNNNNN ............................ TGGTGAAATTGTGATTGGCGACATACCCCCGG 4600362 28 100.0 32 NNNNNNNNNN ............................ CAATCCAGGGTGCGGGTGCCAGTCACCGCCGT 4600422 28 100.0 32 NNNNNNNNNN ............................ GCTTAGCGATGCGCGTGCCGGGATGGCAGCAT 4600482 28 100.0 32 NNNNNNNNNN ............................ TTGCGGGTTTGTTGGCCTAGGTGAGTTTTTTG 4600542 28 100.0 32 NNNNNNNNNN ............................ AGTTCCTGCGCCACGGTATCGGCGTAAGTGCC 4600602 28 100.0 32 NNNNNNNNNN ............................ ACAGGTGTTCGTAAAAACCTGTCGCCATGGGG 4600662 28 100.0 32 NNNNNNNNNN ............................ GGGCGCATCCCTGGCGGCCCAGGCCACGAAAG 4600722 28 100.0 32 NNNNNNNNNN ............................ ACCACCAAACGCGCCTACCGCTGCGCCGGCAC 4600782 28 100.0 32 NNNNNNNNNN ............................ GTCTCGGAGACGTCGTAGGCCTTGCCCGAGGT 4600842 28 100.0 32 NNNNNNNNNN ............................ AGCACGCCGAGGGCGGCGCCGCGGTCCTCGAC 4600902 28 100.0 32 NNNNNNNNNN ............................ GGCGGCCGGTTGCGGTGTCGTACTCAGGGACC 4600962 28 100.0 32 NNNNNNNNNN ............................ ACGTCGAAAAAGTCTTGCGGCAGCGTGACTTG 4601022 28 100.0 32 NNNNNNNNNN ............................ CAGCCGGGCCACCATTCCAATACGTGCTGGAC 4601082 28 100.0 32 NNNNNNNNNN ............................ AGAGGGCGTCGCGTCCAGCGCGGTGCGGATCT 4601142 28 100.0 32 NNNNNNNNNN ..........A................. ACGCCGAACTTCGCGATCACCTACGACAACGC 4601202 28 100.0 32 NNNNNNNNNN ............................ AGCCCGAACGTGGCCACGCCTGTGCCTGCATC 4601262 28 100.0 32 NNNNNNNNNN ............................ ACACGGGCGATATTGTGGGCGCGCACCTGCCG 4601322 28 100.0 32 NNNNNNNNNN ............................ ATGTGCGCATCACGGCCGGTGAGCTGGATGTC 4601382 28 100.0 32 NNNNNNNNNN ............................ AAAGTCAGACCACGACCAAAAACCGCCCCAGT 4601442 28 100.0 32 NNNNNNNNNN .................T.......... TACACCGAGGAGATGGGCGACGAGATCTGCCG 4601502 28 100.0 32 NNNNNNNNNN ............................ TTGCAATAGGCAATGCGAAAATAATTGCAAAA 4601562 28 100.0 32 NNNNNNNNNN ............................ AATGCCCCGATTCCTGCTAGAGCACCTTGAAT 4601622 28 100.0 32 NNNNNNNNNN ............................ TGGAGGCAATCCGGTGAGCAGCACCAACAGCA 4601682 28 100.0 32 NNNNNNNNNN ............................ TTTCAGCGCGGCAGGCAAAGGAGCTGGGGTTG 4601742 28 100.0 32 NNNNNNNNNN ............................ AAGGGTGACGAAGACAACTACGATCAGAAGCT 4601802 28 100.0 31 NNNNNNNNNN ......................G...G. ATCGTTCCGCACGGGTACCGCATGCATCGCA 4601861 28 100.0 1 NNNNNNNNNN ....G.......AC......T..T.... NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 100 28 31 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [7,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 92% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [130,92] Score: 0/0.18 # # Final direction: F [1.92,0 Confidence: HIGH] >NC_017221 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 454101 36 100.0 28 NNNNNNNNNN .................................... CTCACGCCAATACGTACCCGCCGGGATC 454165 36 100.0 28 NNNNNNNNNN .................................... GAATTGGCGCAATCGTATACGATTGAGG 454229 36 100.0 28 NNNNNNNNNN .................................... TCGTAGTCCCCCCAGAATAGTCCGTGAT 454293 36 100.0 28 NNNNNNNNNN .................................... CAAGTGGAACTTGTGTACTCACTGCATA 454357 36 100.0 28 NNNNNNNNNN .................................... ATTGTAGCCGGGTCACGTATGCATTTAG 454421 36 100.0 28 NNNNNNNNNN .................................... TATTCGTTGCCGATGATGTTGCGGAGCT 454485 36 100.0 28 NNNNNNNNNN .................................... CGTGCCTATGCGTTGTTTGCCGCCTTCC 454549 36 100.0 28 NNNNNNNNNN .................................... CTGAGATGCGCGCTGGAACACGCTCAGT 454613 36 100.0 28 NNNNNNNNNN .................................... AATGCGCTGAAATACGGGTTGGCCAACG 454677 36 100.0 28 NNNNNNNNNN .................................... CCGAGGCCGGTAGGGTTGCGTGTCTGGT 454741 36 100.0 28 NNNNNNNNNN .................................... GTTGTAATCGGTCATAATAGTTTTCAAT 454805 36 100.0 28 NNNNNNNNNN .................................... TCTCCCAGTTGCTGCCCCTTGGCGTCGA 454869 36 100.0 28 NNNNNNNNNN .................................... CGTATTCATCGTGGCCTCTTCGCGGTTT 454933 36 100.0 28 NNNNNNNNNN .................................... CGTACATGATGGGGTCCTTGACCTTGTA 454997 36 100.0 28 NNNNNNNNNN .................................... TTGGTGGTGTTGGGCGTCCGGCGCAGAA 455061 36 100.0 28 NNNNNNNNNN .................................... AGGTCGAGCGCCTCCTGCCATCCGGCCT 455125 36 100.0 28 NNNNNNNNNN .................................... ACAGTATTATTGTCCTGATATTCATGTC 455189 36 100.0 29 NNNNNNNNNN .................................... TCGTCGTCCATCTCTGTACCTCGGTTTCT 455254 36 100.0 28 NNNNNNNNNN .................................... TCCATGACCGCGTCCATCACCTCATGCC 455318 36 100.0 28 NNNNNNNNNN .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 455382 36 100.0 29 NNNNNNNNNN .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 455447 36 100.0 28 NNNNNNNNNN .................................... TCCTGCAACTCCTCCTTGCGGGCCTTCA 455511 36 100.0 28 NNNNNNNNNN .................................... GTTGTTCCGGGAACAACTGGGAACAACT 455575 36 100.0 28 NNNNNNNNNN .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 455639 36 100.0 29 NNNNNNNNNN .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 455704 36 100.0 29 NNNNNNNNNN .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 455769 36 100.0 28 NNNNNNNNNN .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 455833 36 100.0 29 NNNNNNNNNN .................................... TCATGGGACTGTGAGCGGCGGCGGCGTGA 455898 36 100.0 28 NNNNNNNNNN .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 455962 36 100.0 28 NNNNNNNNNN .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 456026 36 100.0 28 NNNNNNNNNN .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 456090 36 100.0 28 NNNNNNNNNN .................................... TATTGTTCGGGTGCGATGGTGATGATCA 456154 36 100.0 1 NNNNNNNNNN ..............................TTG.AT NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 33 36 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [61.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [126,424] Score: 0.18/0.18 # # Final direction: F [1.05,0.18 Confidence: HIGH] >NC_017262 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1811916 28 100.0 32 NNNNNNNNNN AG.AC..T..A...A............. GGGAATGATGGAGCCGGATCAGGCTGGGATAT 1811976 28 100.0 33 NNNNNNNNNN ............................ AGCTATTTTGCTTAAGCGCAATCTCATCATGGG 1812037 28 100.0 33 NNNNNNNNNN ............................ AAGCGATGGGGTCGTATCTGCATTTTCTGTTAT 1812098 28 100.0 33 NNNNNNNNNN ............................ TCGTCGCGCCACTGTCGCCGACCATCCCTTCAG 1812159 28 100.0 32 NNNNNNNNNN ............................ GATTTGGCTGACCGGTTACATGATCTCGATGC 1812219 28 100.0 32 NNNNNNNNNN ............................ ACGGTTGACCATGTTGGTGACCAGACTTTTAC 1812279 28 100.0 32 NNNNNNNNNN ............................ TTTTAAGGAGCGGGGTAAAACTACCCCGTTTT 1812339 28 100.0 32 NNNNNNNNNN ............................ TTCAGACGATTATCCAAGGGAGTTTAAGCGGT 1812399 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 9 28 32 TTTCTAAGCTGCCTGTGCGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [60.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [322,44] Score: 0.18/0.18 # # Final direction: R [0.45,1.15 Confidence: MEDIUM] >NC_017262 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 125075 28 100.0 32 TCCGTGGTCA ............................ AGCCTGTCGCTGGTGGCCGGTAGCCTGTCGCT 125135 28 100.0 33 GCCTGTCGCT ............................ TCTTGGTGTAGGACCGGTCGGCATAGGATTAAA 125196 28 100.0 33 TAGGATTAAA ............................ TTGCAAGTTTAACTTCACATCAATCTGTAAAAT 125257 28 100.0 32 TCTGTAAAAT ............................ TTACCTATCCGCTTATTTGAAGCGAACAATAT 125317 28 100.0 32 CGAACAATAT ............................ CGACTGCCGGACGTTCTGCGACACCTGAAATA 125377 28 100.0 ACCTGAAATA ............................ TAGAGGCAAA ========== ====== ====== ====== ========== ============================ 6 28 32 TTTCTAAGCTGCCTGTGCGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [45.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [154,558] Score: 0.18/0.18 # # Final direction: R [0,1.19 Confidence: HIGH] >NC_017274 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 2054517 25 100.0 37 AAACACAACA ......................... TCACATCCCTCACAATCCATAATGAAAATGTCGGCAT 2054579 25 100.0 38 ATGTCGGCAT ......................... ATTTTAGCAATGCAATAGATCAACAATTGAAAGAAACT 2054642 25 100.0 39 GAAAGAAACT ......................... ATTTTCATCTCTTGGATTGAAAATAAATGAATTTTCTTC 2054706 25 100.0 41 AATTTTCTTC ......................... TGTTTCACAAATTTCAAACTTGCAAACGCAACAATTAAATA 2054772 25 100.0 40 CAATTAAATA ......................... GTTTTTGGTCAAATATTTGGACAACACTTACAAGAATTGG 2054837 25 100.0 38 CAAGAATTGG ......................... TAGTCAACGACAAAGTGCTTAAAACCCGTGTTATACTC 2054900 25 100.0 39 TGTTATACTC ......................... GCTGTAATAGTCGCAATAGCAAAAGCCGAAACAATGAGT 2054964 25 100.0 41 AACAATGAGT ......................... CAATAGAATTTTTCTTAGTTGGCATTGACAAGTATAATTCT 2055030 25 100.0 40 GTATAATTCT ......................... CAAAATTCCAAACTTTGGGAATTTCTAGTTTCCAAATTTC 2055095 25 100.0 39 TCCAAATTTC ......................... TTTAAACGCCTTGCAATGGTAGAAACATCAGTAGAAGAC 2055159 25 100.0 41 AGTAGAAGAC ......................... CGCTTTCGACTGCGACAACTGTCGTTTGGCTCATTTGTTGC 2055225 25 100.0 38 CATTTGTTGC ......................... TTATTTCAAATACTATTATCTCCGCCATATGTTTACAT 2055288 25 100.0 38 ATGTTTACAT ......................... ATTATCTGCAATTTTAGCAACTGAGAGGGCAATAATTT 2055351 25 100.0 40 GCAATAATTT ......................... TTTTTTCTTTAAAAGCTCTAGGCAGTTCATTTCTATTTCA 2055416 25 100.0 39 TTCTATTTCA ......................... CATGCCAAATTTGTAATCCCTAGCTTGCTGAACAAAATA 2055480 25 100.0 44 GAACAAAATA ......................... AGTACTGATAATCTGAAGGTATTGGACTAGAACCCATGAAGTTC 2055549 25 100.0 37 CATGAAGTTC ......................... GCTTTAACTTGGTACGCACTTTACGCCATGATAAACG 2055611 25 100.0 39 ATGATAAACG ......................... GAATTTTGTGTTACTGCAACGCCAAGATTTTCAAATGTT 2055675 25 100.0 36 TTCAAATGTT ......................... GTTGAATTTTTGCAACTGGTATGTTGTATTTTTGCA 2055736 25 100.0 42 TATTTTTGCA ......................... AATTTGTTACACGGCTAGGATTTTTTTTCCTAGATGTACAAT 2055803 25 100.0 38 GATGTACAAT ......................... TTCTAATCTTTTGCCCATTACTGCATCATATCTACTAG 2055866 25 100.0 38 TATCTACTAG ......................... ATCTTTACCTTTATATAAATCTTGTTCGTAACAAATAA 2055929 25 100.0 37 TAACAAATAA ......................... ACAAAACGAGGAGTTTATAGTAAAATCAACTATGAAA 2055991 25 100.0 35 AACTATGAAA ......................... ATTATTTGAAGAGAGGGTGAGAGAAGCATGAAAAG 2056051 25 100.0 36 GCATGAAAAG ......................... AACTACAACGAGGTGAGAAACGATGACTAAACGTTT 2056112 25 100.0 38 CTAAACGTTT ......................... TTTAACCAGCATAACAGCATCTAAAAGAATGGGAATTG 2056175 25 100.0 36 ATGGGAATTG ......................... TAGATATATGGCGATGAATTGCATTAGTCAGTGGTG 2056236 25 100.0 39 GTCAGTGGTG ......................... ATTTTTAACGCTATGACGCTAGCCCTCATGTTAGCTTTT 2056300 25 100.0 37 GTTAGCTTTT ......................... AAAGTTTGTTCTTCTGTTTCGTTTTGTTGTTCTGACT 2056362 25 100.0 38 TGTTCTGACT ......................... CCCCTTTTGCCGTCTTTTTAGTTACCACAATGCACCAA 2056425 25 100.0 39 AATGCACCAA ......................... CCGTATCCAGAAATAATTAACCAATCGCTTGTTTGTGAC 2056489 25 100.0 37 TGTTTGTGAC ......................... AAATTAACGTAAAGAGGGAATTTCTCGCACCTATCAA 2056551 25 100.0 42 CACCTATCAA ......................... GAATAAACATTGGTACTGTACTTTGTAGTACTGCATACGGTG 2056618 25 100.0 39 GCATACGGTG ......................... GCATCTGTCGGCAACCTCACTTATTCACGTGGGGGTGCG 2056682 25 100.0 37 TGGGGGTGCG ......................... TCTCTCAGAAACTCCCAACAAATTTGCTATTTGTTGA 2056744 25 100.0 39 TATTTGTTGA ......................... TGCAATTTGTTGAATTGAATAACCTTTTCTAATTAGTTG 2056808 25 100.0 42 TAATTAGTTG ......................... TTGAACTTGTAGAAATTGTTCATATGAAACAGCATAATTTTC 2056875 25 100.0 40 CATAATTTTC ......................... TTTACAGTTAATGGAATTCCTTTTTGTGCATACAATAACG 2056940 25 100.0 36 TACAATAACG ......................... CTCATTATTTCATCATAAAGATTATCCACTGCAATT 2057001 25 100.0 39 CACTGCAATT ......................... ATGCATTCCACCTCTGTTTCTTCCTCTTTACGCATTTCT 2057065 25 100.0 36 ACGCATTTCT ......................... CTCTATATTCTACTATCCTCCCTCTCTGCTCTGGCG 2057126 25 100.0 39 TGCTCTGGCG ......................... ATCTCTGATTTCTCAGTTCTCTAATTCCGAATACTACAT 2057190 25 100.0 41 AATACTACAT ......................... TAAAACTGCTCAAAAATGCTAGAATTATAATTATGGCTATG 2057256 25 100.0 41 TATGGCTATG ......................... ATTTTGAATGTTACGACTCTCGTCATTTTTCCACCTCTTCT 2057322 25 100.0 36 CACCTCTTCT ......................... GGAGTAATCTTTCCAGTCAAAAGACTTTCAGCCCTC 2057383 25 100.0 36 TTCAGCCCTC ......................... TTTATAAGCTTCAATAGAGCTTTATCTTGAGCAATC 2057444 25 100.0 39 TTGAGCAATC ......................... ATAAATGGTACGTCTTCAGGCGGAAAGCCTTCCATTTGT 2057508 25 100.0 34 TTCCATTTGT ......................... ATATTACCTTGCTGGATAAAGTTAATGATTTCAT 2057567 25 100.0 38 ATGATTTCAT ......................... ATCTTTAATAAATCCTCCTTTATTCTCATGTAATGCAT 2057630 25 100.0 40 TGTAATGCAT ......................... TTATATTACGATAAAAGTGCCAGATATGGTTGTTGGCATT 2057695 25 100.0 40 TGTTGGCATT ......................... CCCACCAGAAAAAAAGAAGGGTGGGGGGCAAGGGCCCCGG 2057760 25 100.0 40 AGGGCCCCGG ......................... GCATATATTATTGGCTGAGGTAAGGTCGGCATATCTGTCG 2057825 25 100.0 39 ATATCTGTCG ......................... CCATCCAAGCCTTGATTTGATATTCCTTTTAATGTCTGC 2057889 25 100.0 40 TAATGTCTGC ......................... TTCATTATCCTCAATTTTTTCTATACCCTTGTTGTTCATT 2057954 25 100.0 39 GTTGTTCATT ......................... CCCCACTGGAATGCACCATTTCTTGCAAGTAATACATTT 2058018 25 100.0 40 TAATACATTT ......................... ATGCAGTTTGGCCTAAAGGAATATATACGTTAATGTCTGC 2058083 25 100.0 38 TAATGTCTGC ......................... CCATTATTCGGCACTGCATTTAATTGAAGCACTATACT 2058146 25 100.0 39 GCACTATACT ......................... AATATTTTGAATATTTGTACACCCATATGAAAAACGCAG 2058210 25 100.0 37 AAAAACGCAG ......................... TATCTCTTATTCGTAAGGGTTAAAACAAAATTATCTT 2058272 25 100.0 35 AAATTATCTT ......................... TTTTTATTTAAGAACACTGATGGAAAGATCTATAG 2058332 25 100.0 37 AGATCTATAG ......................... ACCCATATTGAAGAGTTTGAGCATAAAAATGATTCTA 2058394 25 100.0 38 AATGATTCTA ......................... TGATTGCGTTACGTCACCATGGGGCTATTCGTTCTGAT 2058457 25 100.0 39 TCGTTCTGAT ......................... TTAATGTGAAGAAAATTGTTAAACGCGTTTTGCGACATT 2058521 25 100.0 40 TTGCGACATT ......................... CACTACATCTATTGTTTTTCCTTTTGTAAGACATTCCTCA 2058586 25 100.0 40 ACATTCCTCA ......................... CTGTTATTACGTCTCTAATTGCCACGGGCTTAAAAAGCGG 2058651 25 100.0 39 TAAAAAGCGG ......................... ATCAATTTACGCCTTTTAGAAATCCAATTTCAATTATTC 2058715 25 100.0 42 TCAATTATTC ......................... GAAGCAATAGCCAACCCACAAAGCTGACACTATTCATTCGTC 2058782 25 100.0 38 TTCATTCGTC ......................... GTATTCAAAAGAGAACTGGGGGATTCAAGGTAATACCT 2058845 25 100.0 36 GGTAATACCT ......................... CTCCGTAAGGCCCCCATACAGTAAAGTAGCAGTTTT 2058906 25 100.0 37 TAGCAGTTTT ......................... ATAGAAATATAAATCTCAGCAATTCTTGATATATTGT 2058968 25 100.0 36 GATATATTGT ......................... TCCGTTATCATGTTGACTGGAAATGCGTTTAATAGT 2059029 25 100.0 39 GTTTAATAGT ......................... ACCCACAGCACATTGCCATATCCACTAAAATTATACTGA 2059093 25 100.0 38 ATTATACTGA ......................... ATAAATATGTTAACGAATGTTGTAAATTGGTATTCGTT 2059156 25 100.0 38 GGTATTCGTT ......................... AAAGGAATAATAAGCATGAACCGGGGAGTTCACGCTTT 2059219 25 100.0 38 TTCACGCTTT ......................... TCAAACTCATGAAGCTACTGTAATCCATTTCACATAAA 2059282 25 100.0 38 TTCACATAAA ......................... ATCATTTCGTGAAATTTTCGCAACAAACGAAAAAAATT 2059345 25 100.0 40 GAAAAAAATT ......................... ATTATATTGATAAATTGATAAGAATGCCCGAAAATGATTT 2059410 25 100.0 42 AAAATGATTT ......................... AAAAACTTTTCACATTCGACATTAAAAAATAAAATAATTTTG 2059477 25 96.0 39 AATAATTTTG ...............A......... AATTCGTATACCTTAGTAGTATTATCATCAATATTGTAT 2059541 25 100.0 39 AATATTGTAT ......................... TTCTCAATTGCCTTTCCCACGATAACCTCAATCCAGTAG 2059605 25 100.0 37 AATCCAGTAG ......................... TCTACGTTGTTAAATTCATATACAGCTTGGCTCATAT 2059667 25 100.0 38 TGGCTCATAT ......................... ACGTATTTAAATTTTTTGGTAGTACTTTCCTTGTGTAT 2059730 25 100.0 41 CCTTGTGTAT ......................... AGTATACAACAATGCAATAAGTGTTGATAGCTTTGCATCTT 2059796 25 100.0 40 TTTGCATCTT ......................... CGCTTCTCCGTCTTTTCAGTTATAATGCGTAAAAGCTTAC 2059861 25 100.0 37 AAAAGCTTAC ......................... CAGCAAGAAGTTCACTCTCTACATCTTATGATTTCGG 2059923 25 100.0 36 ATGATTTCGG ......................... CGTTTTCGTCTGGATTATTTATTATCTCTAAGCCCT 2059984 25 100.0 36 TCTAAGCCCT ......................... ACCTTTATTTTAAGTCCTAGCCTCTTCCCTATCCAT 2060045 25 100.0 38 CCCTATCCAT ......................... TTGTTTCACCTCCTTATTAAAAGCGACAGACGGTCGAC 2060108 25 100.0 37 GACGGTCGAC ......................... TCATTTCACTGTGTAGAGGTTGAACACCTAATTTTTT 2060170 25 100.0 40 CTAATTTTTT ......................... CTTTGATTGTCCGCTCTCGTTCTTTTCCACACTGAAGATG 2060235 25 100.0 38 ACTGAAGATG ......................... AGCTTTATGACACTCATTATCATATACTCAAAATTATA 2060298 25 100.0 40 CAAAATTATA ......................... TCGATTTTTTTCGAGGATGGATTTGTTTCATGAAAGAGCC 2060363 25 100.0 39 TGAAAGAGCC ......................... CAGCTCGACGATGACGAATACAAGATGCTGTATAATGCG 2060427 25 100.0 40 GTATAATGCG ......................... TTTCTCAACTGATCCACGGCTTCAGAGAAGATGTTTGGAT 2060492 25 100.0 39 ATGTTTGGAT ......................... GAACGAACATGGTAAGCCCTGAGGACCTTGAAAACGATG 2060556 25 100.0 40 GAAAACGATG ......................... CTCAGCAGATTTAAACTAACGATATTAATTGTACACACTG 2060621 25 100.0 39 GTACACACTG ......................... TTAAGTTGTTTTGCTCTATTTAAAACAAAAATAATCCAA 2060685 25 100.0 39 AATAATCCAA ......................... CAAGTGCAATAGCAAACTACTACTAAATATAACATATAT 2060749 25 100.0 38 TAACATATAT ......................... CTATATGGGGTCAGGGTGGAACTAAAATCGTGGCTTTA 2060812 25 100.0 39 CGTGGCTTTA ......................... CTTACTTAAGCCTAATATCTCCGCAACTTCATCAATAGT 2060876 25 100.0 41 CATCAATAGT ......................... GAACTCTCTATTGCTGACGAACTAAGAGAAAATTGTTTCAA 2060942 25 100.0 38 ATTGTTTCAA ......................... TCTAACAATGAATCTGTCATAAAGTGCCCGCAACTCTT 2061005 25 100.0 36 CGCAACTCTT ......................... AGATTATCAATCAAGTGATAGAGATATTGCAATTTT 2061066 25 100.0 39 TTGCAATTTT ......................... TGTTAGATACGGCAAGGCAAAGATTACAAACAAGGATGT 2061130 25 100.0 39 ACAAGGATGT ......................... AAAATGGTGCTTATCGCTATTAGGTAGTCGGCGTTGTTT 2061194 25 100.0 36 GGCGTTGTTT ......................... ACTACTCTTACTTTTTGCATTCCTTTTGGAGTAGGC 2061255 25 100.0 39 TGGAGTAGGC ......................... TATTTACGTGCATAAAGAACATACCTCCAGCGCCTCCTC 2061319 25 100.0 37 GCGCCTCCTC ......................... TCGTAAACTTGAAACTGACCCGTATATCCGAATTTAC 2061381 25 100.0 39 CCGAATTTAC ......................... GTATTATTCTCATAATAGGAACCGCCCTAGTGTATGCTA 2061445 25 100.0 37 GTGTATGCTA ......................... CGTGATTACATGGAACATTACTTTTCCACCGAATATT 2061507 25 100.0 39 ACCGAATATT ......................... TTTATGTTTTCGAGTTCTTCTGGTCTTAACATCACTCTA 2061571 25 100.0 36 CATCACTCTA ......................... GTCAGTTATACGCTACATATGAAAAGATAAATGAAG 2061632 25 100.0 38 ATAAATGAAG ......................... ATCTCTCTTAGTTTTGTCAAAGCTTCTGACCCGCTCCT 2061695 25 100.0 40 ACCCGCTCCT ......................... TCTATCTTTATTGTTACAACTTTTGCATACGACATAATTT 2061760 25 100.0 39 GACATAATTT ......................... TCCTCTATCATCTCCTTTAAGCACTGTGTAATCTCACTT 2061824 25 100.0 37 AATCTCACTT ......................... TAATACTGCAGTAACGGTACAAGTCATTGACAGCGCT 2061886 25 100.0 TGACAGCGCT ......................... ATATGGTATT ========== ====== ====== ====== ========== ========================= 117 25 38 GATTAATCCCAAAAGGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.00%AT] # Reference repeat match suggestion: F [matched GATTAATCCCAAAAGGAATTGAAAG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-1.50,-4.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [572,187] Score: 0.18/0.18 # # Final direction: F [5.59,0.37 Confidence: HIGH] >NC_017274 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 2092271 24 100.0 38 TAAACCCTCA ........................ TTTGTAAAACGTATAAGTCCCGTTAATGAGAAGACGGC 2092333 24 100.0 40 AGAAGACGGC ........................ CAACGCCAACTCCGCCAATTTCCGCATTGATGTTCGCTGG 2092397 24 100.0 42 TGTTCGCTGG ........................ TCTTCAAACTTCCCACGGCACAACGGAGGCATGCAAATTATT 2092463 24 100.0 40 GCAAATTATT ........................ GTAGTAAGCTTTCCTTCTTTATCCTCTAGACCGCTGTAGT 2092527 24 100.0 38 CCGCTGTAGT ........................ AGCAATGTACGAACCACCACCTGCTCCAGTACTGTTCA 2092589 24 100.0 39 GTACTGTTCA ........................ GAACTGTCGTGGTGTTCATGAAATATGGGTATGCATATT 2092652 24 100.0 39 TATGCATATT ........................ GCAAAGAGTCCATTCAATAACACATATTTTGCACATAAG 2092715 24 100.0 39 TGCACATAAG ........................ AACATCCTGATCTATACTACCCCTAATCTTTCTGTAGCT 2092778 24 100.0 39 TTCTGTAGCT ........................ ATCTGGATGAGCTGTTGATCGGAGACATTAGTTAGGTCT 2092841 24 100.0 40 AGTTAGGTCT ........................ CAGTCTGACTCTGAGTTGGCGAATTATTATGAGAAGCTAA 2092905 24 100.0 39 GAGAAGCTAA ........................ CTATCCCCAAATCATTCTGCCTAATGCGTCAGGAGGGAG 2092968 24 100.0 39 CAGGAGGGAG ........................ ACCACGAGCACGACCTCAAATATAACACCGCCAAAAATC 2093031 24 100.0 40 GCCAAAAATC ........................ TATCTTCCAGATGTCTCAGAAACGCCTTAAAATTATTGAT 2093095 24 100.0 38 AATTATTGAT ........................ TACATTAGACCCTAGTTGGTTTATCGCTGGTAACGTCG 2093157 24 100.0 40 GGTAACGTCG ........................ ACACTTAGCGACATAAAAACCGCACTGACTTACAATTACC 2093221 24 100.0 40 TACAATTACC ........................ CGACATACATATATATGCATTTCCGTGGGAGTGTTACAAA 2093285 24 100.0 37 GTGTTACAAA ........................ ACATATGGTTGGTCTCCAACATTTGGTGAGTATATCT 2093346 24 100.0 38 GAGTATATCT ........................ GCTTCTACCACGATCGTATAGTATTTCTTCCCTATCTT 2093408 24 100.0 39 TCCCTATCTT ........................ ACTTAAGACATTAAACGTTGCCCTAGGTGAACTAGGCAA 2093471 24 100.0 38 AACTAGGCAA ........................ AAACAAACGAGGTTAATTATTCTTAACTGTATCGTGAA 2093533 24 100.0 38 GTATCGTGAA ........................ CCTGGGACAAGTTCTGTTGTAGCTGAGGAGAAACGTAT 2093595 24 100.0 41 AGAAACGTAT ........................ TCTGATAGCACCAGACAAGTAAAAGCGTATATCCTAGTCAA 2093660 24 100.0 39 TCCTAGTCAA ........................ AACATATTCTGGTACGGGTTCGCCATCTGGTACACCATT 2093723 24 100.0 39 GTACACCATT ........................ TTTCTGTATTTTCTCGCCCTTCTAGCTAAATTTTCTAAA 2093786 24 100.0 37 ATTTTCTAAA ........................ AGACGCTGATGATAAGCTGTCTAAGAAGGTTTCAAGG 2093847 24 100.0 38 GGTTTCAAGG ........................ CATCCATTTCCGGTACACGATCCCACGTTTGTGTAGTC 2093909 24 100.0 40 TTGTGTAGTC ........................ ACATCGCAAGCGATCTATTGTTCAGTCTATTCCTGGCGGC 2093973 24 100.0 38 TCCTGGCGGC ........................ AACTCCTTTGCAATCCTATATCTAGTGTAGCCGTCTAA 2094035 24 100.0 37 AGCCGTCTAA ........................ CTGCTCCATCAAACGGCCCCGTGAGGGATACTATGAA 2094096 24 100.0 40 ATACTATGAA ........................ AATTTGAACATAATTCGGCCTCGTCAGTTTTCCACAGATA 2094160 24 100.0 39 TCCACAGATA ........................ TCCCTAACTTAGGTTGGGGTAAAGAAATAGAACATAGAT 2094223 24 100.0 38 GAACATAGAT ........................ TTTACTGACAACGCCATCATACTTACTAGCCCAACTAA 2094285 24 100.0 40 GCCCAACTAA ........................ GTCCATTCTCCATTTATCTCAACCTTATCACAAATTTGGA 2094349 24 100.0 41 CAAATTTGGA ........................ TCAGTTCTAGAAAGAATTATTAGCATTAGATCTTCTAGACT 2094414 24 100.0 37 CTTCTAGACT ........................ CTCTCTATCCCAGATGGAATTCCAAAGGATCAAGCAG 2094475 24 100.0 39 GATCAAGCAG ........................ ATCTGAATTTCCTCAGCTTCCATTGCATAATTTATTCTA 2094538 24 100.0 40 ATTTATTCTA ........................ TATTTACCTTAATATTATGTATAATAGATAAGAGCTCCCT 2094602 24 100.0 38 AGAGCTCCCT ........................ ACTATGGACCTACTACAGGGCCTATCTGACTTTCTGTC 2094664 24 100.0 38 ACTTTCTGTC ........................ TTATTGTCAGAAAAAGAAATTATACTCCGATTAATAGC 2094726 24 100.0 40 GATTAATAGC ........................ GTCAAAATTGCCCAACCGAACGTTAGCAAAAATGCAGCAC 2094790 24 100.0 41 AATGCAGCAC ........................ TCCCTTTCAGATTTGCAATATGTTAGAGCGAGCTTCGCAAA 2094855 24 100.0 39 GCTTCGCAAA ........................ GCTGAATTGTAAAATTACGTTTATTACTTTCAGTCAACC 2094918 24 100.0 39 TCAGTCAACC ........................ GTTTTATTTATAAACGGCGGGTCTAGATAAAATACAGTT 2094981 24 100.0 40 AAATACAGTT ........................ TCACTCTTTCAGTCATCATTCTCTTTGCTGAGATTGCTCT 2095045 24 100.0 35 AGATTGCTCT ........................ GCGAAAACAATAGCAGGCGAAATAGAAGATAAAAT 2095104 24 100.0 39 AAGATAAAAT ........................ GCAATAGACAATATAAGGAAGAGCTTACCACCTAGAGGC 2095167 24 100.0 36 ACCTAGAGGC ........................ CCTAGAGGCGTAGCGGGCTCACAAGAAAACATTAAT 2095227 24 100.0 38 AAACATTAAT ........................ AATGCCTGAAGCAATAACGCCCAAGTTACATGCTCTTG 2095289 24 100.0 38 CATGCTCTTG ........................ ATCCCGCTACGGCAATCCCTACGAATAGATCGGCATTA 2095351 24 100.0 38 ATCGGCATTA ........................ GTGTATAAGCACATTAGTAGGATTAGGCACGGTACAAG 2095413 24 100.0 41 ACGGTACAAG ........................ AATCACGAAAGCGATACTAAGGGCAATACAATACAAACATG 2095478 24 100.0 39 TACAAACATG ........................ CTTATTTTGGTGTCAATAATCTGTATGTTGCCGTATTGC 2095541 24 100.0 40 GCCGTATTGC ........................ AGATTGTTTTATTAATACCAAGTAGACAATTATATATTTT 2095605 24 100.0 39 TATATATTTT ........................ CCAAAACATGTCACATGTGCCGATATTGATATTTACAAA 2095668 24 100.0 38 TATTTACAAA ........................ AAATCTACCGATCAACGGACGAGGGGGAACGCTAAGAA 2095730 24 100.0 44 ACGCTAAGAA ........................ GGGAGTTCCCATTCGATTTTGGGAACCCTCAAGCACAGTCTGTG 2095798 24 100.0 41 ACAGTCTGTG ........................ TTGTGCGCCTAGAGTTGCTACGCCTTGTTTCCACACCTCAT 2095863 24 100.0 38 CACACCTCAT ........................ CTAACTTGTTAAAGTTCTGTTGTAGCTCGTTAAGTTGT 2095925 24 100.0 36 GTTAAGTTGT ........................ GTTCCAGCTAAGATGTTCTTTCCTGCAGTCTTTGTT 2095985 24 100.0 39 AGTCTTTGTT ........................ AACTAAGCCTTCACTAGGTGAGATAAAGAGCATAGCTAT 2096048 24 100.0 38 GCATAGCTAT ........................ ATCCGTTCTCCGTCCCGATCCGTACCGTTCTCTGTACT 2096110 24 100.0 37 TCTCTGTACT ........................ AGCATAACTTCATCTTCTTCTACAACTTCGACAGCTT 2096171 24 100.0 42 TCGACAGCTT ........................ TTAATTTATTGTCATCAAATCTATTTAGATACGCTAGTATTA 2096237 24 100.0 39 GCTAGTATTA ........................ ATATTTCTTCGAATGGGTTTTCTGTATCACCTTCTTCAT 2096300 24 100.0 40 CCTTCTTCAT ........................ CATTTGTTATCAACTGTCCGGGTCCAGCGCTAGATGCGGT 2096364 24 100.0 37 TAGATGCGGT ........................ CAAAGTCAGAGCTGGACTATCGTAGACATCTATAATA 2096425 24 100.0 38 ATCTATAATA ........................ ACGTAGCCTAGACTTGCTATAACTCCGTTGTATTGCCC 2096487 24 100.0 39 TGTATTGCCC ........................ ATACCAACAGCAACAACAAACTTATTCTTCGCTCATACA 2096550 24 100.0 40 CGCTCATACA ........................ ACGAACACACCCCTTAAAACTCTTTTTCCAACATTCACCT 2096614 24 100.0 40 ACATTCACCT ........................ CAAAGTCAGAGCTGGACTATCGTAGACATCTATAATAGAG 2096678 24 100.0 39 TATAATAGAG ........................ TCTTAGCGAACTTGCAAAATATTCCGACCAAAGCTAATA 2096741 24 100.0 40 AAAGCTAATA ........................ TCAGGTGAGGAAGATGGTCTCCAAAACTACTGTTATTGGT 2096805 24 100.0 43 TGTTATTGGT ........................ GAGAGCTACAAACACGCTACCTAATAAAATTTCCAGATTGTAG 2096872 24 100.0 37 CAGATTGTAG ........................ ATACAGATTTCGTTATCCATATCCTACATGACTTTCC 2096933 24 100.0 39 ATGACTTTCC ........................ ATACATCGATCTTGTAATTAGATATCCATTGACTGTTAT 2096996 24 100.0 40 TGACTGTTAT ........................ ATGGAATAGGCTCTCAACAGCAGTATAATTGGCAAGTATT 2097060 24 100.0 40 GGCAAGTATT ........................ TCTACTCTTATAATTCCGTTACTTATCTTAACAGAGAACG 2097124 24 100.0 38 ACAGAGAACG ........................ CGTTTCTATTGCAAGGTCTGAGATTTTTGGCCTGAGTA 2097186 24 100.0 40 GGCCTGAGTA ........................ GTATTGAAACGCTTAAGGTCAGCTCTAATTCTGTACGGAT 2097250 24 100.0 44 CTGTACGGAT ........................ ATGTTACTAAGTAAGTTTAATAATATATTATAAAATGCCATATA 2097318 24 100.0 38 ATGCCATATA ........................ CTAAGCAGTGACTCACAGTTTAGACATTCACAAGTATC 2097380 24 100.0 41 CACAAGTATC ........................ TTCTAAGCGTGTAAAGATCTATCTGACAACACGAAACTATG 2097445 24 100.0 40 CGAAACTATG ........................ TTGAATATTGTACAAAGGAACGTTTAACCCTATAATAGAC 2097509 24 100.0 37 TATAATAGAC ........................ CAATCCCATTCGTTTTACTCACTTCTAAGAACCTCGC 2097570 24 100.0 40 AGAACCTCGC ........................ AGTCTCTGCATCATGATCCCTGCCCCAGCTAAGACGTTCT 2097634 24 100.0 40 AAGACGTTCT ........................ ACGATTTTCGGTGTGAATAATGTAAATTTGCAAGTATCTG 2097698 24 100.0 39 CAAGTATCTG ........................ GTCTTTATGGCCCTCTGGGTCTTTCCACCATTGAGAGGA 2097761 24 100.0 40 ATTGAGAGGA ........................ TTATCCTCATTCTATCGGTGAGTGGAACAAATTGGGTAGC 2097825 24 100.0 40 ATTGGGTAGC ........................ ATCGTTATGCTGTAAACTTCCCCGGTTCTCAATCCCGTTT 2097889 24 100.0 40 AATCCCGTTT ........................ AGTTAACAATACTTTATTGTCAAAGAAGCAAGGATATGCG 2097953 24 100.0 41 AGGATATGCG ........................ TTCAAACTAGATCTAGAAGATTTCTATCGGCATCTTTACAT 2098018 24 100.0 40 ATCTTTACAT ........................ ACGATATGAAAGTTGCCAGAGCCTTAAACAGAATTGGTTC 2098082 24 100.0 39 GAATTGGTTC ........................ GCTTCTTGTCCCTGAACTCCTTCTTGAAATGGATTTATT 2098145 24 100.0 37 TGGATTTATT ........................ TTTCGTATAAGGACCAGAACGGCAATACCCAAACTGT 2098206 24 100.0 37 CCCAAACTGT ........................ CTACTACATCATCCTCTACCACGCCAAGCCAACAACC 2098267 24 100.0 38 GCCAACAACC ........................ ATCTAGCGTTGTCTCTGCCGTTATATATTTGAAAGTGT 2098329 24 100.0 41 TTGAAAGTGT ........................ ATCGCTGATCCAGAACCACGTGGCGAATACAGGAAGAACTA 2098394 24 100.0 39 GGAAGAACTA ........................ ATCAAAAGTCCGCTATGGTCTAACGGTGTAAATAATTCT 2098457 24 100.0 37 AAATAATTCT ........................ AATTGGATCCCTACGGTTGACGGATCACCGAAAGTGT 2098518 24 100.0 39 CCGAAAGTGT ........................ ATCATATTTTGAATTCTCTTATACAGAAATCTTTGATAT 2098581 24 100.0 41 TCTTTGATAT ........................ ATAGCTATATATGGAAATGTTCCAGACGCGGAATATGTTGC 2098646 24 100.0 39 AATATGTTGC ........................ AAGCCTACACAGGATAGGATACTCAAATTATATGAAAAT 2098709 24 100.0 42 ATATGAAAAT ........................ TTTGCGCATTTACTTTTGTATGAGCTAGGCTATTTACATCAT 2098775 24 100.0 37 TTTACATCAT ........................ CTGAAATATCCTTCAAATTGATTTGCCAATAAATTAA 2098836 24 100.0 37 AATAAATTAA ........................ TGTTCTGTCGTTACTGTCGTAAAGCACGTCCTATTAT 2098897 24 100.0 38 GTCCTATTAT ........................ ACAGTGCAGAAGTCTAATCCAAATTATTCTACTTTAGC 2098959 24 100.0 39 CTACTTTAGC ........................ TCCTTGGAGATGTTGATGTTTTATACGGTATTATGTGAA 2099022 24 100.0 38 ATTATGTGAA ........................ GCACAATTCGCCAACGATTTCGGTTCGCTTTATACCTT 2099084 24 100.0 41 TTTATACCTT ........................ CAAATTTCGGCGAAAATTGTACCGAATTTCGGCATTGCTGG 2099149 24 100.0 40 GCATTGCTGG ........................ AAGATCATGGTATTGATATTCAAAAACATTATTCAGAGTG 2099213 24 100.0 42 ATTCAGAGTG ........................ ATTAGAAAAGTTTAAGATTACGCATGCAAATATGTTTTTGAT 2099279 24 100.0 39 TGTTTTTGAT ........................ TTCTGTTTCGAAGAAAACCCGCCTCAGATTCATTATGGG 2099342 24 100.0 39 TCATTATGGG ........................ AAATCAAACGGAAACTCCCCGGATATTATCATGTCTAAA 2099405 24 100.0 37 CATGTCTAAA ........................ CCTCATCGTAAACATGCAATCTTGCATATTCAGTGTA 2099466 24 100.0 39 ATTCAGTGTA ........................ GCGATATATGTTATAAGAGGAGAAGGGACTTTACCCCCT 2099529 24 100.0 41 TTTACCCCCT ........................ ATATACATCGCCGGTTTTATAGCAACTGCACAGCAACAAAT 2099594 24 100.0 38 AGCAACAAAT ........................ GAAGTTGCAAAAATTGCCAATGTTTTTTTCAAACGCGT 2099656 24 100.0 39 TCAAACGCGT ........................ ATTTATGATGAAAATAGGAAATTTTTCAGAAGAATTATA 2099719 24 100.0 37 AAGAATTATA ........................ AAAAGTTTAAATACCCGAAGCCACAAAGGTAAAAATA 2099780 24 100.0 40 GGTAAAAATA ........................ CGTTCTAGAGCTAAACGATGCATACGCGGTGGTACAACTA 2099844 24 100.0 41 GGTACAACTA ........................ ATTCGGGGAAAACTTATGCATTATAAGAAGAAGAGATATTT 2099909 24 100.0 40 AGAGATATTT ........................ TCAAATAAGGAACAACTCTGGGTAAGCCCACAATACGCAA 2099973 24 100.0 38 CAATACGCAA ........................ CTTAGCGTCTCAACCTGAACCAAACTTCCTAGATCAAC 2100035 24 100.0 38 CTAGATCAAC ........................ TAAACTAGATCCTTATATTTCACGTAAATGTAAAGGGG 2100097 24 100.0 38 TGTAAAGGGG ........................ TAAGGAGTAAGCTAGCACTAGCAATAGCGGTTGCAATA 2100159 24 100.0 39 GGTTGCAATA ........................ GTTCATCAGTTCTACCTTTTGGTCCAAAGGCTGATCCAA 2100222 24 95.8 GCTGATCCAA ..G..................... ATCTTGATGA ========== ====== ====== ====== ========== ======================== 127 24 39 GATAATCTCTTATAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.00%AT] # Reference repeat match suggestion: F [matched GATAATCTCTTATAGAATTGAAAG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [393,1647] Score: 0.18/0.18 # # Final direction: F [5.68,0.18 Confidence: HIGH] >NC_017265 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 1623381 31 100.0 29 TTATCTTACT ............................... TGCGCCAAAGAAAATGCCATTCAGATAAT 1623441 31 93.5 29 TTCAGATAAT .........T...................A. TACTAGAAGCTTGCCCATCTTACCTTTTC 1623501 31 100.0 TTACCTTTTC ............................... ATGAAAGACATTGTTCGCCAGTCCCCTGA ========== ====== ====== ====== ========== =============================== 3 31 29 GTTCACTGCCGCACAGGCAGCTTAGAAAATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [9,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [339,412] Score: 0/0.18 # # Final direction: F [1.42,0 Confidence: HIGH] >NC_017265 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3177607 28 100.0 32 NNNNNNNNNN .C.A........................ TCTGTACGCATACCGCCATCTTGCATCAGTCT 3177667 28 100.0 33 NNNNNNNNNN ............................ AGCAAAAATCTTAATTACATCTGATGATTTCGG 3177728 28 100.0 32 NNNNNNNNNN ............................ TTTACGGCACGGCGAAAGATTCGGTTCTTGTC 3177788 28 100.0 33 NNNNNNNNNN ............................ TTCTGGATAGGACAAATAGGATGATTGTATCAG 3177849 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 5 28 32 TTTCTAAGCTGCCTGTGCGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [25.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [5,356] Score: 0.18/0.18 # # Final direction: R [0,1.6 Confidence: HIGH] >NC_017274 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 2499490 24 100.0 39 AAAATCCTAA ........................ ATACTGCAAGCGAATTGGCGGAAAATTGGCAGCGACGTG 2499553 24 100.0 42 CAGCGACGTG ........................ TTATCTAATTTTAATAATCAAGGAAATTCATTAACTCAAATA 2499619 24 100.0 39 AACTCAAATA ........................ CCCATTCATCTCTTTCTTTGCAGCTTTGTTCTAGCATTA 2499682 24 100.0 41 TCTAGCATTA ........................ TGGTAAATAGCTCTGTTAGGCCCAGTTATTCCATATTCTGA 2499747 24 100.0 44 CATATTCTGA ........................ ATTTTCTAATATATCTAATTCACTCTGCGTATCATTATGGATAA 2499815 24 100.0 40 TTATGGATAA ........................ CCCGCCCAGCCAGACTGTTTTCAGCCCAAACCGGCTAATT 2499879 24 100.0 CCGGCTAATT ........................ AAATTTATCA ========== ====== ====== ====== ========== ======================== 7 24 40 GATAATCTACTATAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.00%AT] # Reference repeat match suggestion: F [matched GATAATCTCTTATAGAATTGAAAG with 91% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [75.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [2,59] Score: 0/0.18 # # Final direction: F [5.27,0 Confidence: HIGH] >NC_017273 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 102879 37 100.0 38 CAGGGGGGGA ..................................... TGGCCCGGGAGCAACGTGGACCTCATCCGGGAGAAGTA 102954 37 100.0 36 GGGAGAAGTA ..................................... CTCACCAACGGGGACGTACAGGAGGGGGACCTCCTC 103027 37 100.0 38 GGACCTCCTC ..................................... AGCGCCTTCGGCGGCGAGGAAATGTGCCCGGCGTGCAA 103102 37 100.0 35 CGGCGTGCAA ..................................... CGCTCTCGACTTCGACCGCCTCACCGGCATCGGGG 103174 37 100.0 38 GGCATCGGGG ..................................... AAGGTTCTGGAGGCCCACAGCCTGGAGTGCATTCCCTA 103249 37 100.0 38 GCATTCCCTA ..................................... TGGCCGATGCGGTGAACGTTTACAGGGGCGCGCAGGCC 103324 37 100.0 37 CGCGCAGGCC ..................................... GTCTTCCTCGACCCCCCGTACCGGGGCTACGAGGACG 103398 37 100.0 36 TACGAGGACG ..................................... AGGTTCGGGCAAGAGGTGGCCGACTACGTGGAGGCC 103471 37 100.0 38 CGTGGAGGCC ..................................... GTTTGCGGGGGGGTATGGGGTTTGGGGGGTGAGCCCCG 103546 37 97.3 36 GTGAGCCCCG .........................T........... CCCGAGGAGGCCCTGCACGACCTCATGGTCTGGGCC 103619 37 100.0 38 GGTCTGGGCC ..................................... TGCCCCAGTATGGCGATGGTCATGGCCCGGTCCGCCCA 103694 37 100.0 35 GGTCCGCCCA ..................................... CAGGTCATGGGAATGTCGTAGTGGACCAGCCACTC 103766 37 100.0 37 CCAGCCACTC ..................................... CCCACGGCGGCTAGGGCCTCCCTAGCCCGCCCCAGTT 103840 37 97.3 CGCCCCAGTT ...A................................. AAGGCAGGCG ========== ====== ====== ====== ========== ===================================== 14 37 36 GTTGCATCCAAGCTTCACAGCTTGGCTACGTTGCAGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [7,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-9.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [33.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [130,38] Score: 0.18/0.18 # # Final direction: R [0.59,1.01 Confidence: LOW] >NC_017273 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 116844 36 97.2 36 AGGCAAGACA ..A................................. CCTCTCTGCCGCGAGCATCCTTCACCTCCAAAGGAA 116916 36 100.0 36 TCCAAAGGAA .................................... ACCTCCAAAAACCTGCAGAGGAAAGAGCCTCACCAG 116988 36 100.0 36 GCCTCACCAG .................................... CTACACGAAGCTCTGGAACAGGGGGGGCGGTAAGCT 117060 36 100.0 35 GCGGTAAGCT .................................... GGGTCTCGTCCTTCCCGTCCTTCCTAGGCATACTC 117131 36 100.0 36 AGGCATACTC .................................... GGACCTCGCCATTTCCACCAGGGAGGACGCGGACTA 117203 36 100.0 36 ACGCGGACTA .................................... TATCACCGACGCCGCCATCGTACAAACCGGGAGTAG 117275 36 100.0 CCGGGAGTAG .................................... GGCCCCCTCC ========== ====== ====== ====== ========== ==================================== 7 36 35 GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.80,-4.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [43.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [370,241] Score: 0/0.18 # # Final direction: R [0.27,5.28 Confidence: HIGH] >NC_017273 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 128169 36 100.0 36 GGAGGGGGCC .................................... ATTAGTCACGGCCCAAATGGCCGACGGCGACTACGA 128241 36 100.0 38 GCGACTACGA .................................... CCGTTTAGAAAGCCAGCTTCTGAGCGCCCCTGAGGGAG 128315 36 100.0 37 CCTGAGGGAG .................................... TCCCGTGGCCTCCAGGGCCTCGGCTCCTCCCTCGGGG 128388 36 100.0 37 TCCCTCGGGG .................................... AACTCCCCGGCGAGATGGGCCACAGAGCGAACCCCTT 128461 36 100.0 37 CGAACCCCTT .................................... CACTACCTAGTGCACCAGATGCACTAGTCTCGGGGCT 128534 36 100.0 36 TCTCGGGGCT .................................... GCCGTGCGGCGTGCCGGGTGGTCTACGGCCCCCCGC 128606 36 100.0 36 GGCCCCCCGC .................................... ACTACCAAGGGGCGAGAGGAGAGATTTGGTTCGGGA 128678 36 100.0 35 TGGTTCGGGA .................................... CCCGTAGCCGCCATTTGCTTTCCAAGCCACCACCT 128749 36 100.0 38 GCCACCACCT .................................... TTCTCGCACCCCTCCTCCTCGGCGCGTGGGTCCACCAC 128823 36 100.0 36 GGTCCACCAC .................................... CAGATCTACCTCGGCCCGGGCGCCCTCGTGGACCCC 128895 36 100.0 CGTGGACCCC .................................... CCGAGATAAA ========== ====== ====== ====== ========== ==================================== 11 36 36 GTTGCAAACCTCGTTAGCCTCGTAGAGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.90,-3.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [26.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [241,1401] Score: 0.18/0.18 # # Final direction: F [4.87,0.45 Confidence: HIGH] >NC_017273 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 172123 37 100.0 38 CAGCTTGGTC ..................................... AGGGCCCGGGCGGGGGTGGGGGGACGCCCCCCGTGGAG 172198 37 100.0 35 CCCCGTGGAG ..................................... GCGTTGGGGATGCCGCTTTCCCTTGCCCAAGCCGT 172270 37 100.0 37 CCCAAGCCGT ..................................... AAGTGTGGGGGCTGGCGGGGTGGGGGTTGGGGGCGGT 172344 37 100.0 39 TGGGGGCGGT ..................................... ATGATCTCAGGCAGCTACAGCGTCATCGCTAATGTCAAC 172420 37 100.0 35 TAATGTCAAC ..................................... TCGCACGGCGCGGTAGAGCGCAGGATTTTCACCAG 172492 37 100.0 TTTTCACCAG ..................................... TCCCCCCTATA ========== ====== ====== ====== ========== ===================================== 6 37 36 GTTTCAATCCTCACCGGCCCTTTCGGGCCGGTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [5,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-17.10,-18.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [35.0-35.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [134,204] Score: 0/0.18 # # Final direction: R [0,5.24 Confidence: HIGH] >NC_017273 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 180589 37 100.0 36 NNNNNNNNNN ..................................... AGGACGGCCATTGGAGACGCCGTCCTACCCTATCTG 180662 37 100.0 39 NNNNNNNNNN ..................................... CCCCGCCACGTGGCGCGCAGGATGGCCCACGCCTCCCGA 180738 37 100.0 35 NNNNNNNNNN ..................................... CTTGGCGCGTGGGAGGAGGTCCGGAGGGGGCTCAA 180810 37 100.0 36 NNNNNNNNNN ..................................... TCGGGGATGGTCTTACCCTCCAGAGCGGCGTGCCAA 180883 37 100.0 36 NNNNNNNNNN ..................................... CTCCCCCCCCTATAGTCCCCCCCCAAAACTCGGACC 180956 37 100.0 40 NNNNNNNNNN ..................................... GATTACTCACCCTGGGTGAGTAAACTGATTGGGGGTAGGT 181033 37 100.0 36 NNNNNNNNNN ..................................... ATTCACATCGTGGGGGCGGCCACCCCCACCGTGGCC 181106 37 100.0 35 NNNNNNNNNN ..................................... CGGTTGATCTCCTCCGGGGTCATGGAAGCTAAATC 181178 37 100.0 36 NNNNNNNNNN ..................................... TCCGACCTACCCGACTTCTCCCAGGAGGCCAACCGC 181251 37 100.0 39 NNNNNNNNNN ..................................... CAGAGCAGTGTGCCAGTCTCTGGGGTGTTTGACGGGGTA 181327 37 100.0 37 NNNNNNNNNN ..................................... GTCTACGGGAAGGCCTTCGCCCTCCGGAGGGCGGAGA 181401 37 100.0 38 NNNNNNNNNN ..................................... TAGAAGACTCTAACGTCAGGGACCAGCTCTCCCAAACC 181476 37 100.0 35 NNNNNNNNNN ..................................... CCCTCAACCTTCGCCACGCCCTCCTGGGGCGCCGG 181548 37 100.0 36 NNNNNNNNNN ..................................... ACCAGGAGGCGTTATGACCCCACAGGAGGCCATCCA 181621 37 100.0 38 NNNNNNNNNN ..................................... CAGCATGGCCTGCTCTAGGCGCGCTTCGTACTCTTCGG 181696 37 100.0 37 NNNNNNNNNN ..................................... CTTGGCGGGAATGCCGAGCCTGGCGGCCATGAGCCGC 181770 37 100.0 38 NNNNNNNNNN ..................................... ACGTTTCAGCTCCTCCAGGAGGTACTTCGCCGTGGCCA 181845 37 100.0 35 NNNNNNNNNN ..................................... GTAGGGGTGGGCCGCCAGCACCAGGCCCGGGGTCG 181917 37 100.0 1 NNNNNNNNNN ...........T.....................GCC. NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 19 37 36 GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [9,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-18.00,-17.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [33.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [193,40] Score: 0.18/0.18 # # Final direction: F [5.83,0.27 Confidence: HIGH] >NC_017274 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 2076434 25 96.0 38 TATTGCGTAA -........................ TTGAAGATAGAGTTAAATGAACTTTTGATGACACAAAA 2076497 25 100.0 41 TGACACAAAA ......................... GTCTACACCTCTTGCGTCTATTATGATATCATATTTGTCAA 2076563 25 100.0 39 TATTTGTCAA ......................... AAATACGTTTTCTCCATTGTCATATTGCGCATAAGTTGA 2076627 25 100.0 37 CATAAGTTGA ......................... ACCAAGTGAAACTTGGAATATATAACCAAAAAGATAT 2076689 25 100.0 38 AAAAAGATAT ......................... GATTCTTCAATAAAGCTGGTAATATACTTTGACAGAAT 2076752 25 100.0 40 TTGACAGAAT ......................... AGTAATAGAAACTCATTCAGAGTCTCTTCCAACCCGTACA 2076817 25 100.0 35 AACCCGTACA ......................... CGTGGTAGTGGTGGTAGTTGTTGTTGTTGTAGGCG 2076877 25 100.0 39 GTTGTAGGCG ......................... TAGTATAGTGTTACAGTTAAACGCTGTACCGAATAATGG 2076941 25 100.0 39 CGAATAATGG ......................... TAGTATAGTGTTACAGTTAAACGCTGTACCGAATAATGG 2077005 25 100.0 41 CGAATAATGG ......................... AAAATGTTTAATATTGGTGGAGTAGTTGATTTCGATAATAT 2077071 25 100.0 39 TCGATAATAT ......................... AAGGGTAATAGAAAGCATGCCCATATCAGCAAGTTCTAA 2077135 25 100.0 39 CAAGTTCTAA ......................... GTAAAATCCCCAACGCCACATACGTTATAAGGGAAGATA 2077199 25 100.0 37 AGGGAAGATA ......................... CTAGTGTTAAAATATATTTCAAGCCTTACGATGAGAA 2077261 25 100.0 37 ACGATGAGAA ......................... CATGCATCAGTTCATCGTAGTTGAACTCAGCATGGAT 2077323 25 100.0 40 CAGCATGGAT ......................... CAAATCCATTCGAGGAAGTGTTAGAAGAGGTGTATGGTGA 2077388 25 100.0 38 TGTATGGTGA ......................... CAGAGGGAAAAAGTTTGCAGGAGATTTCAAGTATTACA 2077451 25 100.0 40 AAGTATTACA ......................... CAATATTAAATATTAGTGATTTGGTAATAACGAAAATAAA 2077516 25 100.0 39 CGAAAATAAA ......................... GAGTGAGACCATGATCATTAACACTGATATTACGGTAAG 2077580 25 100.0 37 TTACGGTAAG ......................... AACAAAACTTCACCAGTGATGGAACATTTGAATGTAA 2077642 25 100.0 40 TTGAATGTAA ......................... AAACCGCAAGCAATAATGTACTTACGATAAGGGTGATACT 2077707 25 100.0 42 GGGTGATACT ......................... ATATGATTATGAGCGATAAGAATGATGCAATATTAGATATAT 2077774 25 100.0 38 TTAGATATAT ......................... GAATATACAGAGAATAGAGAATAGAGAACAGAGAACGG 2077837 25 100.0 36 CAGAGAACGG ......................... CCGTGATCAGATACAGTAACAGTCATGTTTTTATCT 2077898 25 100.0 37 GTTTTTATCT ......................... CATGGAAACGGGAGGAGGGTGAGACAATGAAGGTTAC 2077960 25 100.0 38 TGAAGGTTAC ......................... CACATCTTTAGAGGCGAACTACAGGGGGTACAGCAACT 2078023 25 100.0 40 TACAGCAACT ......................... GTAGTGTGAGTAGTGTAGTAGTAGTGGCCTGAATAAGTAG 2078088 25 100.0 35 GAATAAGTAG ......................... AAATTCTGCAAAGGTAACACAATTGACGAGGTAAA 2078148 25 100.0 40 ACGAGGTAAA ......................... CGGTTACGGGGACGTTTGGACATTTAGCAGCGCATCCCAA 2078213 25 100.0 40 CGCATCCCAA ......................... TCCCTTCCTCTCTTTCCGCTTTTGCTCGCTTCGTTTAACT 2078278 25 100.0 41 TCGTTTAACT ......................... GGCATAACCGCTGCTTTCGGCTGCTGCTGCTAATTGGTCTC 2078344 25 100.0 39 AATTGGTCTC ......................... CCTTCAGCAAGTTGAAGATCTTAAGCGTTTCTTCATCTT 2078408 25 100.0 38 TCTTCATCTT ......................... ACGCTGAACGACGTAAACAAGCTCGCACAGAAGAAAAT 2078471 25 100.0 40 AGAAGAAAAT ......................... AAGTCACTGAATTGTTGGACGAACTAACTGAAAAAATTAG 2078536 25 100.0 38 AAAAAATTAG ......................... GGCATTAGAATATGGGTAAAAACTTATAGCGACGAAGA 2078599 25 100.0 36 GCGACGAAGA ......................... TGAAGTACTTGTTAATGTTTCACCTCTAAAGAAGAT 2078660 25 100.0 37 TAAAGAAGAT ......................... TTTACCACCGCTCAGACTTCTTGAGATGTTTAAAACC 2078722 25 100.0 44 GTTTAAAACC ......................... GAATTCTATCAAGTATTGCGGAAGTAAATACTTCATATTTATCA 2078791 25 100.0 38 ATATTTATCA ......................... TCCACTTGGCATATCTTTGGCTGAAGTTCCTTGGTGTG 2078854 25 100.0 36 CCTTGGTGTG ......................... CTTCAAGTTGATGAAGTTATAAAAATGTTTGAAGCT 2078915 25 100.0 36 GTTTGAAGCT ......................... CACATTAGCAAGAATCGTGCTAGCTACAGTTGGATT 2078976 25 100.0 39 CAGTTGGATT ......................... AACTTGGAAGAGTTTAGTGATAAAATCATGGAAATGTTC 2079040 25 100.0 41 GGAAATGTTC ......................... TGTTAATATTGCCGGTTCGGCTAGTGATATAGTGTGGTTCT 2079106 25 100.0 34 GTGTGGTTCT ......................... GGTAATGGTCTGTATATTGTCTTTAAGTATTTAT 2079165 25 100.0 39 AAGTATTTAT ......................... AGCACTAATTGCGAGATTTGAGGATGCCATCAGAAGTAA 2079229 25 100.0 40 TCAGAAGTAA ......................... CAAGCTAAGATTGCGAGTACAAGCGATCACTTACACAAAG 2079294 25 100.0 40 TTACACAAAG ......................... ACGCCGTTTCTCTATAGTTATTGAACCATGCAATATCATT 2079359 25 100.0 38 CAATATCATT ......................... ATTAGCTAAACCATTTCAAAGGCTAACATCTTCTATGT 2079422 25 96.0 40 TCTTCTATGT ...............G......... ATAAATCCACAAAGTGGCCGTTCAAAGCAAAGAGTTTATT 2079487 25 96.0 39 AGAGTTTATT ...............G......... TGATATTTATTTTCTCGTGAAAAGTGGAGGGCCTAGAAC 2079551 25 96.0 36 GGCCTAGAAC ...............G......... ATTATATCATGGAGACCCAGGTGCTGTGACTATCAA 2079612 25 96.0 43 TGACTATCAA ...............G......... AATTAGCCAGCGTGCCATCTGGGTAAACGTGTATTTTGGTTAA 2079680 25 96.0 39 TTTTGGTTAA ...............G......... ATAATATATTTCGTTCCAACTACACCTAATGGATTCGGG 2079744 25 96.0 36 TGGATTCGGG ...............G......... TAATTGTCTGCCCTTGAGTTCCACTGAGAGAAACGC 2079805 25 96.0 39 AGAGAAACGC ...............G......... AAAAGACGTACAAATATACATCGCACCGAACGGACACAT 2079869 25 96.0 37 ACGGACACAT ...............G......... GGGTGCGTGCCCCACAGGTCGCGGGTCTACCCCTTGC 2079931 25 96.0 37 TACCCCTTGC ...............G......... TTATGTCGTTATCTTCTTCGTTTTTGCTGCGTTGTTT 2079993 25 96.0 34 TGCGTTGTTT ...............G......... GATAAAATATTAAATTCTCAAATTCCATTTAGAG 2080052 25 96.0 35 CCATTTAGAG ...............G......... AAAATTTGAAACAATATCGCATCTTGAATAATTAT 2080112 25 96.0 38 GAATAATTAT ...............G......... GCTTCTTCCCAACGCTGTACGTACTCTTAGGTGTCACA 2080175 25 96.0 38 AGGTGTCACA ...............G......... AATTACAGGAAAAAGACGAACTAAATGAGGAAGAAATG 2080238 25 96.0 38 GGAAGAAATG ...............G......... TACTCAATTTGTGCGCAGTTTTTCATTGAGGGAGACTT 2080301 25 96.0 41 AGGGAGACTT ...............G......... AAAAATTCTGAGTGCAATGTATAATGAAAATATGGATAATA 2080367 25 96.0 40 ATGGATAATA ...............G......... TGTTGTCCAAATAAATGCTGTACCGACTAACAATAATGTA 2080432 25 96.0 36 CAATAATGTA ...............G......... CAGGAGTTGGAGGTATTATCGGAGCATTGTTAGCAT 2080493 25 96.0 40 TTGTTAGCAT ...............G......... ATGATTTGAAAATAGATGAAGAGCTATCTAAACTCATTCC 2080558 25 96.0 36 AACTCATTCC ...............G......... ACCACATTATGAAGGTACTCCAGAATTCTCTAAGAT 2080619 25 96.0 38 TCTCTAAGAT ...............G......... TAGATCTATTCGCAGAGTTTGCATCAACACATAAGTAC 2080682 25 96.0 37 ACATAAGTAC ...............G......... ATAATATGGTGAAAATTGAAGGTGAATCATTAGCAAA 2080744 25 96.0 38 CATTAGCAAA ...............G......... AATTTTTTGTTTAAAGATGATTCAGTGGAAGAATATTA 2080807 25 96.0 40 AAGAATATTA ...............G......... CAATCCCAAAAAGTAAATCCCCAATCTTCAAATAATATGG 2080872 25 96.0 AATAATATGG ...............G......... TGTTGTGTTT ========== ====== ====== ====== ========== ========================= 71 25 38 CTTTCAATTCCTTTTAGGATTAATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.00%AT] # Reference repeat match suggestion: R [matched GATTAATCCCAAAAGGAATTGAAAG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-1.90,-2.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [59,560] Score: 0.18/0.18 # # Final direction: R [0,5.96 Confidence: HIGH] >NC_017275 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 355291 24 100.0 41 GGCCATAATA ........................ TGAGGGCAAAAATTCTTAGAGATGTTATCGACGACTTGGCG 355356 24 100.0 40 CGACTTGGCG ........................ CACTTTCTTTCGCCTCGTCAAGTATAGGTGAAACATCAGA 355420 24 100.0 39 AAACATCAGA ........................ TACGCAGAATCCTGAGCAAATAGGTATCGCCGCCCTCGT 355483 24 100.0 40 CCGCCCTCGT ........................ CTTACGAATTGCGTTTGTGTTAGTGTGCCTGATACAACAG 355547 24 100.0 44 GATACAACAG ........................ CCGCGTTTACCGCGAATACCGCGATCTCCCCCGGATTCTGTTAA 355615 24 100.0 40 ATTCTGTTAA ........................ AGACTGAGTGAAATTCTGAAAGTGTTGAAGGAACCGGAAA 355679 24 100.0 42 GAACCGGAAA ........................ TGAGGCTGATGAGTCTAGATTTAGAACTGGATATATTCAATG 355745 24 100.0 40 ATATTCAATG ........................ CATTACCACAGCCTGGTGGAACTTTACCAGGTTCACTTTA 355809 24 100.0 42 GTTCACTTTA ........................ TCGTCAGCCTCTGCCGAATTATGTTTCATATACCATGTTTTT 355875 24 95.8 42 CCATGTTTTT ...............C........ GTATTTTTATATTAGAAAATATGTAAAAAGACTACATGTTCT 355941 24 100.0 42 TACATGTTCT ........................ CTAAAGAAGTGGCAATCACAACAAAGGATGGTAAAAGCATTA 356007 24 100.0 39 AAAAGCATTA ........................ TTTCACTACTGTAATGTTGTGAGTTTCATGTCTTATCAT 356070 24 100.0 39 GTCTTATCAT ........................ CTTATACCCAAATGTCACATAGATTTGCTAAACCGATAG 356133 24 100.0 45 AAACCGATAG ........................ CTTTCGTTGATCATTATCTCATCAACAACATAATCATCCCTCACA 356202 24 100.0 39 ATCCCTCACA ........................ GTTACGTTATAGAAACAAGCAGAACTAACAGAAGTATAT 356265 24 100.0 44 AGAAGTATAT ........................ GTCAACTCTCCTAACTCCAATTGAGGAGTGGAATGAGATCTCAT 356333 24 100.0 40 GAGATCTCAT ........................ CTATGACAAACACGAAACCTATCATGAACAGCGGTGCAAA 356397 24 100.0 38 GCGGTGCAAA ........................ CCGATTTCTTGGCGTCTGATTCTGATTCGGGCAATATG 356459 24 100.0 41 GGGCAATATG ........................ AAAAAAACATATTCCGTTATCCCCACGCCTCTACCACCACC 356524 24 100.0 39 TACCACCACC ........................ GTTGTTGATTATAATTATAGCTGTCGCAGTGACAGCAGA 356587 24 100.0 40 TGACAGCAGA ........................ CTATCCATAGATCGCCCCTATTAGTCAACACGTTGTTGTG 356651 24 100.0 40 CGTTGTTGTG ........................ TACTTGTATAACAATAGAGGCAATTATCGCTATGGCATGG 356715 24 91.7 39 TATGGCATGG GC...................... CGTTAGGAGCGCTAGGTGGTGGACTTTTCGGGATAGCGC 356778 24 100.0 43 GGGATAGCGC ........................ CTAAAATATCATGGATATCGATAGATAATGAAAAGTATATAAC 356845 24 100.0 40 AGTATATAAC ........................ TCGGAATCGTGCCAAGTTAATCAACAACCAGATGGTCACA 356909 24 100.0 39 GATGGTCACA ........................ CCGTGCCATTTGGAGCTCCCACCTAAAAATGTGTAAAAT 356972 24 100.0 39 TGTGTAAAAT ........................ TAAAAATTAAGCAAGCATTACGTGACGCCGTAAGAGAGA 357035 24 100.0 40 GTAAGAGAGA ........................ ACCAAGATGAAGATAAAAAGAACTATTATCGTTTTGACGT 357099 24 100.0 41 GTTTTGACGT ........................ ATTAATTTATTGACAGTCTATCTTATAAATAATCATGAAAA 357164 24 100.0 40 ATCATGAAAA ........................ CTTCAACAACAGCAAATGCAGGTCTAACAACTTCAGATGT 357228 24 100.0 37 CTTCAGATGT ........................ CTAATTCTGGTTCAAGCAACATCACTATAATAATAAA 357289 24 100.0 40 TAATAATAAA ........................ CGGTGCTGCATGCAGCATTATCCGCTCACCCTAGTATTAT 357353 24 100.0 41 CTAGTATTAT ........................ GTTACTCTTTTGATATTTCTCATTTTTTCAATTTTTATTAC 357418 24 100.0 43 TTTTTATTAC ........................ TGAATGACCTTATAAGACTGATGAGACGAGCTTATGAAGAGAA 357485 24 100.0 44 ATGAAGAGAA ........................ CTGTCGACTTCTACCAAATTGAAGGTAAAACAATATATTATATA 357553 24 100.0 45 ATATTATATA ........................ CCATTCTGTTAAGTGGCACTATGCCTTCCGCCGATTATCTTAGGA 357622 24 100.0 42 TATCTTAGGA ........................ CCAGCAAATGGCTCAAGTATTACCAGCGTTAGGTGTAACAGA 357688 24 100.0 37 GTGTAACAGA ........................ CCCGTCGCTATCTTCTACAGTCTCTTGTGTTAAGTAT 357749 24 100.0 41 TGTTAAGTAT ........................ TTAGGTAGGTACTCATTTACCCATAAATTATATTGTAGTAT 357814 24 100.0 38 ATTGTAGTAT ........................ TTGTCGACTACTGAAGATAAGGATATCTCTATATGAAT 357876 24 100.0 45 CTATATGAAT ........................ TCAAAGTTTACGCGAATAGACCCGGACACCGTGGTATCATAACAA 357945 24 100.0 43 ATCATAACAA ........................ GAAGCTGAGGCATTAGAAGCAGAAAGAAGGGGAAGAGTATGAC 358012 24 95.8 45 AGAGTATGAC T....................... ACAGGGAATTCGCAATACTCTAGTACGTACACACAAATAGCTAAC 358081 24 100.0 43 AATAGCTAAC ........................ GGAGCTGCTTCTAAATTATTTATAGCGAAATCTATATGTACGG 358148 24 100.0 41 ATATGTACGG ........................ TCAAATGGTCTAATTTTTGATGAAATTCAAACTTGGAAAGA 358213 24 100.0 40 CTTGGAAAGA ........................ CTTTGGGGATCCGTTACATTAATCCCACCGTTTAGTATCT 358277 24 100.0 41 TTTAGTATCT ........................ ACTACTATCCCTTCTACTCTACAAGAAGGGGTTGAGAGATG 358342 24 100.0 43 TTGAGAGATG ........................ GTTAGGGCATGTTCATCAATGTTTGGGCATGAAAATGTAATAA 358409 24 100.0 40 AATGTAATAA ........................ GAGAAGGAGCGGAAATATTTACGCGAATTGTGGAATGAGG 358473 24 100.0 44 TGGAATGAGG ........................ AGGATCATCCCGTTCCTTCTGGTGACGGTGGTCTATAAGTTTAA 358541 24 100.0 43 ATAAGTTTAA ........................ GAATTCCATGTCTTGCTAATTGTACATGATAATTTACAATTTT 358608 24 100.0 42 TTACAATTTT ........................ CGAGTGAATCTATAACGGGTAGTGGAAACACATTAGTAAACG 358674 24 100.0 40 TTAGTAAACG ........................ TACCAAACACCTCCCTAACCTGACTCTTTGTCAACGTCAG 358738 24 100.0 40 TCAACGTCAG ........................ TCTGCATTTTTCACGATTTCACGTAAATCTTTTCCATCTA 358802 24 100.0 39 TTTCCATCTA ........................ TTCAATTATTGCTTCACCATAACTGCCATCATCACTAGT 358865 24 100.0 42 CATCACTAGT ........................ TTTATCGAAAGATTTAAATATCTAATTTGCGTACAAGATAAT 358931 24 100.0 43 ACAAGATAAT ........................ AAAAATATAACGACAGATTGACGGAAATCGAGAAAGACCCGTT 358998 24 100.0 41 AAGACCCGTT ........................ TTGAGAAAAAAGGGATAATCAAGAGTGAGGGGGATGGAACA 359063 24 100.0 40 GGATGGAACA ........................ ACCGGTTCTTCTTCATGTAAGTATCTATAGCGTTAGTCTG 359127 24 100.0 41 CGTTAGTCTG ........................ ATCAAGAGACCAAGAAAATACTAGACAGTCTTTACGATAAG 359192 24 100.0 40 TTACGATAAG ........................ AATGCAGTGGCGGAATCTAAGGATTATTCAATAGATGATA 359256 24 100.0 41 ATAGATGATA ........................ ATAGAAGATATTGGAACAATAACTTCAGATAATTTTATAGA 359321 24 100.0 41 ATTTTATAGA ........................ ATTATTCTAGTTCCTAACAATGTTCCTTCCAATTTCACGAC 359386 24 95.8 40 ATTTCACGAC T....................... AGAACCTCCTACTTGTGACTCTTTCTAACATGTCAAAAGA 359450 24 100.0 40 TGTCAAAAGA ........................ TTGTCTTGTGGGCATCTTAACTCTACTACGCCGTTTTGAT 359514 24 100.0 43 CCGTTTTGAT ........................ ACGGGTACTAAGGATAGGATAATGATTAACGAAAAGAAGTTGA 359581 24 100.0 40 AAGAAGTTGA ........................ ACAGACGCTATAAGAAGAAGAATAGAAGAATTGCTGAAGT 359645 24 100.0 37 TTGCTGAAGT ........................ AATTCCGCGGATCAATCTTTACAGAAATGGTACAACT 359706 24 100.0 42 TGGTACAACT ........................ ATAAATATCAAATGTTTGCGTATTTCAGGATAATGAGGCTTA 359772 24 100.0 40 ATGAGGCTTA ........................ GGATAATTCTTCAGAATTTAAGTAACTATGTAGTTTATAT 359836 24 100.0 43 TAGTTTATAT ........................ TCAATTCCTCCGCGAATTCTTTTGGAAAAACAAAAGAGATTAG 359903 24 100.0 43 AAGAGATTAG ........................ AGTGACACATATCGAAATGTCACACTATGGTTGAAAATGTTCC 359970 24 100.0 39 AAAATGTTCC ........................ ATGGGGACCAGTCACGCTGATACCACCATTTTCAATTCT 360033 24 100.0 42 TTTCAATTCT ........................ CGGTGTATATGAACAATCCTGGACCAGCGTAACCGTTATACG 360099 24 100.0 40 CCGTTATACG ........................ TATTAGTTAACACAAAACCTAATTTTTCTATTTCTCTCAC 360163 24 100.0 46 TTTCTCTCAC ........................ AGTATGTAGTGGAATACATCAAAGATAGCATAGGTGATTTAGCAGA 360233 24 100.0 44 ATTTAGCAGA ........................ AGAAAATAAAAGAATTAAATCAGTACCCGTGTTTAGTAATTGTA 360301 24 100.0 41 AGTAATTGTA ........................ CTGAGTATTGTATTTCATCATAGAATGGCGGGTCAGTGAAA 360366 24 100.0 44 GTCAGTGAAA ........................ GAAAAACTAAAGAAGAAAGATCTCGTTACTTTCAATATTATTGA 360434 24 100.0 41 ATATTATTGA ........................ TCACCCGTTTATGGGGTAGGTAATACCGGGTTTTCCTCAAT 360499 24 100.0 45 TTTCCTCAAT ........................ TTGCCCCTCATATTTTGTTTAAACGAAAAAAATATAAAAGCTTTT 360568 24 100.0 41 AAAAGCTTTT ........................ CTTTGGAGGTGGAGGTGGCGAAGTCCAAGAGATATCTGGAA 360633 24 100.0 41 ATATCTGGAA ........................ CAAGAGGCCGTGATCGAGAGGGCGTTAGAATCTCTAAAGCG 360698 24 100.0 40 CTCTAAAGCG ........................ TACCATATTATAATGAAATAAAATTTATTTCTAAAATTAC 360762 24 100.0 42 CTAAAATTAC ........................ TATGGCCCCTCAATTAACTAGTACTTATGCACAATATGATAA 360828 24 100.0 41 AATATGATAA ........................ AATTGAAGGTTCCAATTTTCCTCACTTCAAATATTTTAAAA 360893 24 100.0 41 TATTTTAAAA ........................ ACGATATCGCTGAGATTGTCAGGATCCACGTTGAAAGAGTA 360958 24 100.0 38 TGAAAGAGTA ........................ CCAATACCCCCATCAAAAAATGTATGTTGACTTGAACT 361020 24 100.0 39 GACTTGAACT ........................ TTCAAAATTAAATGTTAAAGATAAAACTGTGACAATAAT 361083 24 100.0 48 TGACAATAAT ........................ GAGGACCAGCTATGGTCCTCTATAGGTGGACCATCTCAGGACCAGCTA 361155 24 100.0 41 GGACCAGCTA ........................ ATAGCGACACTGGCTATCGGATGGTGGCTAGGGTCTACATT 361220 24 100.0 40 GGTCTACATT ........................ TCGGAGAACTGGGTAGGTTTTTGGAGAACATAACCGATGA 361284 24 100.0 41 TAACCGATGA ........................ ATGGAGAGGGCAAAAAGTCAACTGTCTAACCCCGGGTGGGT 361349 24 100.0 42 CCGGGTGGGT ........................ GCCAGCGCCACCCGTATAAGCAAATGTCATATTAGCATAAAT 361415 24 100.0 45 TAGCATAAAT ........................ TCGCTATACCGGTATTGATAAATAATGCCTTAGTCTTCTCAGGAT 361484 24 100.0 39 TTCTCAGGAT ........................ CGTAACTTTACAATAAAAATAAAAAGGAGGTATTGTAAG 361547 24 100.0 42 GTATTGTAAG ........................ CCCTGCAAAGCCACCGGGCATTCCAGCCGGTAGTATGGGTGG 361613 24 100.0 40 GTATGGGTGG ........................ TTACTTTAATGGGAAAAACGAGTAGAAAAATTTAAATACT 361677 24 100.0 38 TTTAAATACT ........................ ACGGTCGCTCAAAAGGCGACCGTGATAAAAGTCAAGTT 361739 24 100.0 40 AAGTCAAGTT ........................ AGTCCTCCGAGATATTGAAAGCCTTAAGATATTGATAGTA 361803 24 100.0 ATTGATAGTA ........................ TGAGGGTTTT ========== ====== ====== ====== ========== ======================== 101 24 41 CTTTCAATTCTATAGTAGATTAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.83%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [176,353] Score: 0.18/0.18 # # Final direction: R [0,5.09 Confidence: HIGH] >NC_017275 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 365878 24 100.0 43 AAAACCCTCA ........................ ACAACGTTGATCCAATTAATCTTGTTCGCTGCAGGAGTCGGTG 365945 24 100.0 41 GGAGTCGGTG ........................ TTAAATTTAATTTTAAATTCATAACCGTTAGCGTCACCATT 366010 24 100.0 40 CGTCACCATT ........................ TTTGCACTCACCGTTACGCTAGTAGTGTCATTAATAGAAT 366074 24 100.0 41 TTAATAGAAT ........................ TTTTCGATTTTTTCTCGCTCTCGCGAGAACTTTTTCAATCA 366139 24 100.0 39 TTTTCAATCA ........................ ATTAGCCCGTGAAGGATTCACAGTTCAACAGATAGCATT 366202 24 100.0 41 AGATAGCATT ........................ ACTCAGTGCCTGCTCCTCCAAACGCTTCCGTGCCGTAATAT 366267 24 100.0 46 GCCGTAATAT ........................ AGAACTTAAAAAAATGAAGAGATAAAAAGATAAATATGTCATAACT 366337 24 100.0 38 TGTCATAACT ........................ ATCACGCCTTCCTCTACTTCAAGAGTAAGGAAGTCAGG 366399 24 100.0 36 GGAAGTCAGG ........................ GTTGTTAGGGAAAGCGCTTAGATACGATACGTTAGA 366459 24 100.0 42 ATACGTTAGA ........................ AACATTTACAAACATAGTCATTACTCCAGAGTTTAACTGTGC 366525 24 100.0 40 TTAACTGTGC ........................ TTAGGCGTTAACCACACCCAACCGATAATTTCGTAATCAT 366589 24 100.0 41 TCGTAATCAT ........................ TTTAATTCAAAACTTCCGCCTCTACTAGTTAGTAAATATAA 366654 24 100.0 40 GTAAATATAA ........................ GTAAAACCATTTTGAAATTTTGCAATTACCAAATCATCTT 366718 24 100.0 42 AAATCATCTT ........................ TGTCTTCAAGAAGGTGCCTAAGCACCTTCTTTTTGGGGTCTT 366784 24 100.0 38 TTGGGGTCTT ........................ GATTAGGTATGAATTTATTGGTTACTATTAGATCTCCT 366846 24 100.0 40 TAGATCTCCT ........................ AGTGCTGTCATCAAATGAAAAAAGAAGACTGACTTTATAA 366910 24 100.0 41 GACTTTATAA ........................ CATTTTGATATCTTTCCACACGAATTAGATCAGCTAGCTAA 366975 24 100.0 40 AGCTAGCTAA ........................ AACGAGATTGAGAAAATCGTTACTGACACAAAGCTAAGAG 367039 24 100.0 42 AAGCTAAGAG ........................ TTTCCGCTAAAATTTTTTAATATATAAATGTTTTTACGCCGT 367105 24 100.0 39 TTTACGCCGT ........................ TCAGTCCCGCTAGAAACAATTACATAGTCCATAGCTCCA 367168 24 100.0 45 CATAGCTCCA ........................ TTTAAAGCCAAATTCATGATATTACCAAATTGACTGAAATATTAT 367237 24 100.0 42 GAAATATTAT ........................ TTTTCTATCACTATTATATATTATATATTATGACAAATTTAT 367303 24 100.0 43 ACAAATTTAT ........................ ATCAGTCGAGGGACGGTAAATATCACAAGGCCTATGAAATCCT 367370 24 100.0 44 ATGAAATCCT ........................ CATTCAGTGTATATAGTTCCTAGTTTTCGATTCCCTATGCATAT 367438 24 100.0 42 CTATGCATAT ........................ CCTCTCTGTAAACGTAAATACTTATCAATCGATAGTTGTCTT 367504 24 100.0 41 TAGTTGTCTT ........................ ATCATGAGAAAAATAGTCGATACTCTCCCCCACTTAAGGAG 367569 24 100.0 42 ACTTAAGGAG ........................ GAAACATTTAGTAAAATAAATCCAAATGCACTTCTATTAATT 367635 24 100.0 44 TCTATTAATT ........................ TGAGACTTTACTACTGGAAACTCATAAATTCTGCCCTTGAAGTA 367703 24 100.0 41 CCTTGAAGTA ........................ GCTTTTCGAATATCATAGTCTGGCAAGTTTGTCGGTTCACC 367768 24 100.0 40 TCGGTTCACC ........................ CAAACTCAAACAAAAAGTGAAAGCGAATATGATTTTTTAG 367832 24 100.0 42 GATTTTTTAG ........................ TCCAGTACGTTATGTAAGATGAACCGGCACCGTCACCTACGA 367898 24 100.0 39 TCACCTACGA ........................ TTTTTATATCAAAGTTATAGATATAATCGCGGGCCATAT 367961 24 100.0 42 CGGGCCATAT ........................ TAAGAATTTCATCTGCTTCGTGCTGAACATTAACTCATATTT 368027 24 100.0 42 ACTCATATTT ........................ TTTATTCATGTCAAATTAGGCTAGAGACCCCACTCCTTGAGG 368093 24 100.0 40 CTCCTTGAGG ........................ CTTAATGTCGGTGGTACAATACCGCCAAAGGCTATAGTGT 368157 24 100.0 39 GCTATAGTGT ........................ GCTAAAAAACAGCTGTTCAAAGTGTGTGAGACCATCACT 368220 24 100.0 39 GACCATCACT ........................ AATTCTATAAATTCTACACTTTCTACTGGAATTGAAAAT 368283 24 100.0 38 AATTGAAAAT ........................ TCAGCTGGACGTAAAAAAGATGCTGCTATGTCTATACC 368345 24 100.0 41 TGTCTATACC ........................ AATTAGAATAATCAGTTACATCGTAATTGTCAAAATCGACG 368410 24 100.0 40 AAAATCGACG ........................ TCTAAGCTCGTTTACTGAATAATGTGTGACTATGCTTAGA 368474 24 100.0 39 TATGCTTAGA ........................ TATGCCGTCCCGACGTTAGTCCCTTGCTGTCCTAAATTA 368537 24 100.0 41 TCCTAAATTA ........................ GAATAGGCTATTGTTGCTTATGCTTCTTCCCTGAAGTAATA 368602 24 100.0 41 TGAAGTAATA ........................ GTAAAACTAATGGGAAGGCCAGGGGTTGCGTAAATTTCCAC 368667 24 100.0 40 AAATTTCCAC ........................ TATTATTTTTTCTACTCGTGCTGTTGGTACATTCTCGTTT 368731 24 100.0 41 ATTCTCGTTT ........................ TTCAAGTGTGTAAATTAGAGTGTTGTTGGACAGAGAAACTG 368796 24 100.0 40 AGAGAAACTG ........................ TTTCAAAGGGGCTGAATTTTACGTTGACGATAATATCTAC 368860 24 100.0 43 TAATATCTAC ........................ TAACGTAATCAACTAAGCCTGGCGTCGCTATACCAGTATTAAT 368927 24 100.0 42 CAGTATTAAT ........................ CATAAATTCTGCCCTTGAAGTAAATGTCATAAACTTCAATAC 368993 24 100.0 43 ACTTCAATAC ........................ TTCGTCTTATTCTCTAATACATTATTATTATATATGAATACTC 369060 24 100.0 42 ATGAATACTC ........................ TCTCTCTGGCCCACCGGTGGGCCAGCGGAGGACCCGGGGGTC 369126 24 100.0 41 CCCGGGGGTC ........................ GTAAAATACAGTAAAATTTTGAATAACTTCGAAGAACTGCA 369191 24 100.0 40 AAGAACTGCA ........................ TTTATTCCCTTTATCTTCAGAATTCTAGAAGCTATTTTAT 369255 24 100.0 39 GCTATTTTAT ........................ CGTGGAGCTCCGAACCCTTCTCAAACGTCACTACGGTCA 369318 24 100.0 38 ACTACGGTCA ........................ GAAGAGAGTGAAGAACTAAAGAAAAAAGGAAAAGCTGT 369380 24 100.0 42 GAAAAGCTGT ........................ TTTTGAGTTTTGTTAATTGTGATGACATCACGCTCAGTAATA 369446 24 100.0 43 CTCAGTAATA ........................ GAGAGAAAATACCGCTAATCTCATTCACAGTACCAAAAATCAT 369513 24 100.0 37 CAAAAATCAT ........................ CGCCTCACTCCGCCGTTTGCTGCACGGTAGGTGAGGT 369574 24 100.0 43 TAGGTGAGGT ........................ TCAGTTAATAACAGTTTTTGGATTGATGATAATGCCAAATTTC 369641 24 100.0 40 GCCAAATTTC ........................ GGGCTTCCTATTAGTTATAGTGTAGGAGCAATTTCTTCAT 369705 24 100.0 38 ATTTCTTCAT ........................ CAAGATGCAGAAGATTTAAAATTAATTGCTGAATTCTT 369767 24 100.0 39 CTGAATTCTT ........................ TAGAGCGGGATTACCGTTAAAATGAGAAAGATTAATGAA 369830 24 100.0 38 GATTAATGAA ........................ ACTTGACCCCGAGATACTCTTTTTTCTCATTAGTTGTT 369892 24 100.0 40 ATTAGTTGTT ........................ TGGTGTTGACGTGTGCTACCGTGATGCCGTGTTCCCTCTT 369956 24 100.0 40 GTTCCCTCTT ........................ CTCGGTTCACTGAGTACACAAGCTTTACTATTATTTTCGC 370020 24 100.0 39 TTATTTTCGC ........................ TAATTTAACGTTATTATATCATTGTATAGGCTGATAGTG 370083 24 100.0 39 GCTGATAGTG ........................ TTTGAATGATTGTGGATCTTTGTTGACTCTTTTTGATAC 370146 24 100.0 42 TTTTTGATAC ........................ CTTTAGACATAGATTAAAATCGGGGGCAAAAAAATGCCCACA 370212 24 100.0 44 AATGCCCACA ........................ TAACGCTAGTAGTATCGTTTATAGAATTCCCTACCCATGCATCT 370280 24 100.0 41 CCATGCATCT ........................ ACTTCGTACCCCGCACCCTCCGCAGTCTTTATCAAATCTGT 370345 24 100.0 40 TCAAATCTGT ........................ ATTTCATCTTCTGTGACCCATTCTTCCACTTCTTCTTCCT 370409 24 100.0 44 TCTTCTTCCT ........................ ATTTCATCTATTTCATCTTCTTTCTCTTGTTGAACATTTTCTTT 370477 24 100.0 38 CATTTTCTTT ........................ AGGAATACTTTCCCGTTGACCGCGCTTATATTAACTGC 370539 24 100.0 43 TATTAACTGC ........................ TCATTGACAAAGTTTCGGGTGATAAATTAACATTAGGAATTGA 370606 24 100.0 40 TAGGAATTGA ........................ CTCGTTATAATTATCGCGATCGCAATGCTGGGAATTGGTT 370670 24 100.0 41 GGAATTGGTT ........................ TTCTTTGAAGTCCAGGTCCGCAAAGAATACATCAGCCTGGA 370735 24 100.0 43 TCAGCCTGGA ........................ TCTGTGGGTTCACTTCTATTACATTATTCGCCGTAAAGCAACA 370802 24 100.0 41 TAAAGCAACA ........................ TCTAAGGTCAAAATTATAATTATGGCTAGTGCCAGTGGGGT 370867 24 100.0 41 CCAGTGGGGT ........................ ATTCCGAGTAAGGGGGTGAGCTGAGTGGCTAACAAGAGGAA 370932 24 100.0 42 ACAAGAGGAA ........................ ATTATATGTAATAGGAATAACACCAACTTTTGCTTTCGCTAA 370998 24 100.0 41 CTTTCGCTAA ........................ TATAAAGTCACTTTACAACAAACCTACGCATATGCATTTAG 371063 24 100.0 42 ATGCATTTAG ........................ CGGGTGGCAATCGTGATTACCATTCCATTTACACCTCTATCT 371129 24 100.0 43 ACCTCTATCT ........................ AACGACAGATCTTATTTTATTAGAAGAATTACGAAAACTGCTC 371196 24 95.8 45 AAAACTGCTC T....................... ATTAACTGTTAAAACTGATAGCATGTACGCGGAGGTCTGCTACAG 371265 24 100.0 42 TCTGCTACAG ........................ CTAAGTTGTTTAGTTTGACGTTTTCTATCGCTTGGGAATAAA 371331 24 100.0 40 TGGGAATAAA ........................ ACACAAACAATAACACCGTCGAAGAGGTATCGACAAAAAC 371395 24 100.0 38 CGACAAAAAC ........................ ACTTGACCCCGAGATACTCTTTTTTCTCATTAGTTGTT 371457 24 100.0 43 ATTAGTTGTT ........................ TTGTTTCAGTTACTAGATAATGAAGGAAAAGCATTGGAATTAG 371524 24 100.0 39 TTGGAATTAG ........................ CGATAACAAAATCTTCAGGATTCATAAAATCAAAATGGT 371587 24 100.0 40 TCAAAATGGT ........................ CTGGGTTAGGACTGTTTACCTGTTTTATAGCAAACCCTGA 371651 24 100.0 39 CAAACCCTGA ........................ CAATGAATTCCTTTTCTGTATCAAAGACTCCCTCAGCAA 371714 24 100.0 40 CCCTCAGCAA ........................ CTCGATTTAAATTTGGAGTGGTGAAAGAGATGAAAATAGA 371778 24 100.0 39 TGAAAATAGA ........................ ATACATCCGCGGTTGGGGTCTGTGTTATGACCCCATTCA 371841 24 100.0 37 ACCCCATTCA ........................ TATTCACCCTGGCAGATATAAGAATTACCTTCAGTTA 371902 24 100.0 40 CCTTCAGTTA ........................ TTCAGAGCGTTGATAAATGAATAGAACACTGTATATTTCG 371966 24 100.0 41 GTATATTTCG ........................ TATCAACTTTTATTCTAGTCATGTCTCTCACCAACTTCTTC 372031 24 100.0 40 CAACTTCTTC ........................ GTTTTTTAGTTCTATTACTATTTTCTTCTATATCTTCTTC 372095 24 100.0 40 TATCTTCTTC ........................ ACTTCATAATTCTACGATATCCATACTGTTGATATGATTT 372159 24 100.0 39 GATATGATTT ........................ ATTGTTTGCAATGACGCTCTTCCGTCAGCATCGTATGAA 372222 24 100.0 41 ATCGTATGAA ........................ CGTGCAGTTGATGATGACTTATCAGAGGCGACGTTTGACAA 372287 24 100.0 40 CGTTTGACAA ........................ TCGAAAGGTTACGAAGTAGATGAAATTGCTGAAATGTTGA 372351 24 100.0 36 GAAATGTTGA ........................ TTAGGAATGCCTTTGATAACATACCCTTTGTAGTAT 372411 24 100.0 42 TTTGTAGTAT ........................ AGACTATAGTTATAGTTTGTGTTTGACGTAGATATCATTATC 372477 24 100.0 38 TATCATTATC ........................ ATCTTGAGATAATCTCACTCATCGGGACACCCCTAAAT 372539 24 100.0 43 ACCCCTAAAT ........................ TCAGCGTCAGTACTGTACATCTTATAACGTATGACTTTTCCCA 372606 24 100.0 39 ACTTTTCCCA ........................ TATTTCACTAAATACTCCATGTATATCTCAACACACTCA 372669 24 100.0 38 AACACACTCA ........................ GTAATTAGGGGGCTAAGACACGTCCATCTAACCCATTT 372731 24 100.0 39 TAACCCATTT ........................ GTGAGTGTAGATTATCTCTTCAGCAATTGCCTCAATCAG 372794 24 100.0 41 CCTCAATCAG ........................ TTCGTCAAATCCCCTTGTCCTATCAATTCTTTATATTCATC 372859 24 100.0 38 TATATTCATC ........................ CACGTAACCTGACCATACTTCTTCACTGAACTCCTGAA 372921 24 100.0 38 AACTCCTGAA ........................ CAACAAAAACTCTAAATAACCCCAATTACACAATTTAA 372983 24 100.0 45 CACAATTTAA ........................ ATTCTAAAATAAGCATACATTTGGTATCGTTTTGCATCTTTCTGG 373052 24 100.0 38 ATCTTTCTGG ........................ TCTATCATATAGACAATGTATCTCTTTATTTTCTCTAT 373114 24 100.0 38 TTTTCTCTAT ........................ TCACAGATTACCGCTTTGACCTCACGTGGCGGGTTCTT 373176 24 100.0 40 GCGGGTTCTT ........................ TTCTAACGTTAGTTGTACAATAAATAACAGATGCAATAAA 373240 24 100.0 37 ATGCAATAAA ........................ GAGCGAAGACTTACAAAAGTACATAGGGAAACTAGGA 373301 24 100.0 GAAACTAGGA ........................ GTTTACAAAC ========== ====== ====== ====== ========== ======================== 116 24 40 GCTAATCTACTATAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.83%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [291,1511] Score: 0.18/0.18 # # Final direction: F [5.18,0.18 Confidence: HIGH] >NC_017275 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 740059 24 100.0 37 AAAGAACATA ........................ TGACTTTTGAAGGATGTGCGAAAATGATGCAACTGGG 740120 24 100.0 36 TGCAACTGGG ........................ ATGTGTCCCTCTCTATGATAACGAAACTGGCAAGTT 740180 24 100.0 36 CTGGCAAGTT ........................ AACTATTGGTGAGAAAATGGAGGTAGACATAAAATT 740240 24 100.0 35 ACATAAAATT ........................ ATTTATTCTCCAAATATTGGCAACCAAACAAGTGA 740299 24 100.0 38 AAACAAGTGA ........................ CAATATCTGATAAGACCCAATGAGAAGTGCGACCTATT 740361 24 100.0 39 GCGACCTATT ........................ AAGAGGAAAAAAGCACAAAGTGAAAGTAAATGAGGTGAA 740424 24 100.0 35 ATGAGGTGAA ........................ ATAAAAAGAATTAATATAACACCATCTGACAAACC 740483 24 100.0 36 CTGACAAACC ........................ CTTTGGCACTTCCACTAGCCCCACGCCGGGTATCTT 740543 24 100.0 34 CGGGTATCTT ........................ AATACATAAGGACAGACGAGCAAGAAAGAGAAGT 740601 24 100.0 34 AAAGAGAAGT ........................ TTTTAGTGTGGAGATCATTTGCATCACCTAATTA 740659 24 100.0 34 CACCTAATTA ........................ ATAATATGCTAATTTCTATATTATATAATTAGCT 740717 24 100.0 35 ATAATTAGCT ........................ AGTTAAGTTTTGTTTTTTTCTTCTTAATTTCTAAT 740776 24 100.0 35 AATTTCTAAT ........................ ATTAGATGAAGAAATCTTTCTTCTGTTTTTAATTT 740835 24 100.0 36 TTTTTAATTT ........................ CAGAAAACTGGTTTATTGATGAAATTTTTTCTATTG 740895 24 100.0 34 TTTTCTATTG ........................ ATAGGCCCGTTATCTCCATTGTCACTAAGCATTT 740953 24 100.0 34 CTAAGCATTT ........................ ATTAGGAACAAAAAGAAATTGAAAAAAATATTAG 741011 24 100.0 37 AAAATATTAG ........................ AATTATTCATATATTCTATAGTTAATGGCAATCCAGA 741072 24 100.0 35 GCAATCCAGA ........................ ATTTATTCTCCAAATATTGGCAACCAAACAAGTGA 741131 24 100.0 33 AAACAAGTGA ........................ TACGTAAAATATCTTAATAAGTGATCGAAAATG 741188 24 100.0 37 ATCGAAAATG ........................ CTTAGTTTGGGTTCAGGATACCTGAAGATTTCTTTAT 741249 24 100.0 36 ATTTCTTTAT ........................ ACAGCTTCTTCTTCAGTACCAGTTTCCGTTAAAGTT 741309 24 100.0 36 CGTTAAAGTT ........................ ATAGAAGACCTCCTAACAGAACTGCAGACTGAATAA 741369 24 100.0 36 GACTGAATAA ........................ AGCAAATAAAGTTAAGTTTAAGATCAAAGCAAAAAG 741429 24 100.0 36 AAGCAAAAAG ........................ AAGAATTGCAAAACAATTATTAACAATTGTAAATTT 741489 24 100.0 37 TTGTAAATTT ........................ TTTATAAGTGAGGTGTCTGGCAATCCAGCGTAGAAAA 741550 24 95.8 35 GCGTAGAAAA ................A....... AAGTCGTCAAAAACAACAGCATAAAACGGAAAGTT 741609 24 100.0 36 ACGGAAAGTT ........................ CTTCAGGAATTCCCTAAGCAGCTGCAAAGTCCTAAT 741669 24 100.0 35 AAGTCCTAAT ........................ GTGATACGAACTATGGTGATTAAAGAAATCTACGA 741728 24 100.0 34 AAATCTACGA ........................ ACTCTTCTATTTTTTCATCAAAAAAGTGATATTA 741786 24 100.0 35 AGTGATATTA ........................ ATGATTTTGCAAGAAGTTTTCAATTTTAGATATTA 741845 24 100.0 36 TTAGATATTA ........................ ACTCAACAGTAAAGGAAACTCATAAATCCCTCCTTT 741905 24 100.0 35 TCCCTCCTTT ........................ ATGATTTTGCAAGAAGTTTTCAATTTTAGATATTA 741964 24 100.0 34 TTAGATATTA ........................ GAAAGCGAGGACGATTTAATAAGCGTGATTCATA 742022 24 100.0 GTGATTCATA ........................ TGATCCTTCC ========== ====== ====== ====== ========== ======================== 34 24 35 GTTTTAGTTTCTTTGTGTTGTTAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.83%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [978,772] Score: 0/0.18 # # Final direction: F [0.41,0 Confidence: MEDIUM] >NC_017276 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 725209 24 100.0 42 AAACGTATGA ........................ CAGCTGTTTCAGATCATAAGTAATTTGTGCTATTATATAGTC 725275 24 100.0 42 TTATATAGTC ........................ TTAGAATGAAAATTGTCTCATTGCCTCTTCTTTAACTTTGTC 725341 24 100.0 40 TAACTTTGTC ........................ AGGGTTCGATTTGACTTATGCCCCTAGTGACTCGATGGCA 725405 24 100.0 41 CTCGATGGCA ........................ ACGCGGTGAACTTTCTGTCTTTCAGGAATTCGGAAATCTCT 725470 24 100.0 39 GGAAATCTCT ........................ GAGAGATGTACAAAATCAGAAGGACAGACCCTGGAAGAA 725533 24 100.0 44 CCTGGAAGAA ........................ GCGTAGTTGAGGAGTTTTTTCCTAATTTTTGCCATAAGAACTTT 725601 24 100.0 38 TAAGAACTTT ........................ CGGCAATGAGTTTTGGGTAAATGTGGTGGAAATTGATA 725663 24 100.0 38 GAAATTGATA ........................ CTGGGACACTGAAAGAGAGTTAGTGAGTCTGCACTTTA 725725 24 100.0 41 CTGCACTTTA ........................ AAGGAGTCACTGATTGGATTATTCGTATTTAGTAAAAAGAA 725790 24 100.0 39 GTAAAAAGAA ........................ TAGGGGCTTCAAACGAACTACCGACTGAAGAAGAATTAC 725853 24 100.0 41 GAAGAATTAC ........................ ATAAACTTTATATACCACCAAACAAACAATATATTGTAGAT 725918 24 100.0 44 TATTGTAGAT ........................ CGGATATACAAAGCAGAACTAGGAAAGATCTAATTCATTATAGT 725986 24 100.0 43 TCATTATAGT ........................ CACGCCCGATATGTCTATACCTGTAACTTCTTTGGAAAAACTG 726053 24 100.0 39 GGAAAAACTG ........................ TTACTTAACTAAAGTTCTGAGCCAAGTCTTAAACCTAGA 726116 24 100.0 41 TAAACCTAGA ........................ TGAATTTCTTACAAACATATAAATTGTAATTGATGAATTTG 726181 24 100.0 43 GATGAATTTG ........................ TAGTAAAAACGTACTATTTTTTTGATTCGCAAGATGATACTCT 726248 24 100.0 41 ATGATACTCT ........................ ATGGCATACTACGACGTCAGTAGGGAACTAGAGATTTACAT 726313 24 100.0 40 AGATTTACAT ........................ CTAACATGGTAGCTTTCATGGCAGGCGACGTCACTAGTGT 726377 24 100.0 43 TCACTAGTGT ........................ TAGTAAAAACGTACTATTTTTTTGATTCGCAAGATGATACTCT 726444 24 100.0 41 ATGATACTCT ........................ ATGGCATACTACGACGTCAGTAGGGAACTAGAGATTTACAT 726509 24 100.0 40 AGATTTACAT ........................ CTAACATGGTAGCTTTCATGGCAGGCGACGTCACTAGTGT 726573 24 100.0 38 TCACTAGTGT ........................ AAAAATTCGCTACTACAAATCTTAGTTAAGTCCTGTTG 726635 24 100.0 39 AGTCCTGTTG ........................ CATCACTCGTAGCTATATACCTTGGGACAAGGACTCTGG 726698 24 100.0 39 AGGACTCTGG ........................ AATTGCCTAAACTTTTCGCCGCTTATCTCTTCTTAAATA 726761 24 100.0 39 TTCTTAAATA ........................ CAAATTTCTGGCCGGGGGGCCAGAATATCGGTAATCGAT 726824 24 100.0 41 GGTAATCGAT ........................ GATATTGTTAATAGAGTTGTAATTGAAGTAATTGGAAAGGA 726889 24 100.0 39 TTGGAAAGGA ........................ TAGGCGTCGCAAAGTTCTTCCGTGACATTGCAGACTGGA 726952 24 100.0 40 GCAGACTGGA ........................ TGAATGGTGCGATAAATATCCTACATATCCCCGAGTCTCT 727016 24 100.0 41 CCGAGTCTCT ........................ ATGATAATAGAGAGAATAAAGAGAGAAACTGGGGAGTTAAA 727081 24 100.0 40 GGGAGTTAAA ........................ CGTGTCAATATCGATTGGGAAGACTTCAAGAAGGATCAAG 727145 24 100.0 40 AAGGATCAAG ........................ AATAATCGCTCGCCTTCTTAGCCTCTGCAATTATCTGCGA 727209 24 100.0 42 TTATCTGCGA ........................ TTTATTAGCCCGCGAGGGCTTTACAATTAAAGAAATAGCGTT 727275 24 100.0 40 AAATAGCGTT ........................ CCATAGAACTAAACGGAAAAATTGTCACTGTTGAGGGTGA 727339 24 100.0 39 TTGAGGGTGA ........................ AGAAAGGGTAGGGAGACTAATAAAAATGCTTCCCAGTAT 727402 24 100.0 42 TTCCCAGTAT ........................ CGAGGTCTCTCCTCATCTATACTTTTGATAATTGATATTAGT 727468 24 100.0 40 TGATATTAGT ........................ GGTATTAACGGTTGACGATAAACAATTAGAAGACAGAATA 727532 24 100.0 41 AGACAGAATA ........................ ACTATTGATTAGATTTTTTGAGTCTGCCCAGAAAGATGAAA 727597 24 100.0 41 AAAGATGAAA ........................ AGAAAGATCTGAAAGGACCTGAACGAAATTGGGCAGAATTG 727662 24 100.0 40 GGCAGAATTG ........................ CATTTTTGCTATTTAGCCATCCCAGACCGCGAAGGACTTC 727726 24 100.0 40 GAAGGACTTC ........................ TAGATGAGATTGTTGACCGTTGGCGGTGGGGAATATACTA 727790 24 100.0 41 GAATATACTA ........................ TAAGTTTAGGGAAAGGTTTAAAAACGCCTAAAAAAGAGAGT 727855 24 100.0 42 AAAAGAGAGT ........................ GATATGAATGGAGAATTACTCCATAATTTGATCCTAAAATCA 727921 24 100.0 40 CCTAAAATCA ........................ CATTCATGGGGAATTCCTCCATCTTCATCTTCACCACCAC 727985 24 100.0 40 TCACCACCAC ........................ GGGTAATAATGGGCATAGGCATAGGGGTTGCTATCGGCTT 728049 24 100.0 42 CTATCGGCTT ........................ GATAAGCGATAAGCCCCGCGACTGCGAAGATGACAAAGAAGA 728115 24 100.0 39 ACAAAGAAGA ........................ TGGTAGTACAACTGTTACAAATCCTATTGGCAGCTTTAA 728178 24 100.0 37 GCAGCTTTAA ........................ CAGTTGATAAGTATCCATACATTCAAGCACGAGGATG 728239 24 100.0 42 CACGAGGATG ........................ CGGTGCTGCGGCCTTCTTCATACTTTTGTTGTTAGCGGTCAC 728305 24 100.0 41 TAGCGGTCAC ........................ AACTTTTATAACTGATGATAATAGAGAATTCGTATTTTGTA 728370 24 100.0 42 GTATTTTGTA ........................ AGGGAGAGCTGTTAAAGGATCTTCAGCATCTCCGTGAAATAG 728436 24 100.0 40 CGTGAAATAG ........................ CACCCCAAAACAAATCCAAACCCATGGAAAAGGTAATGAA 728500 24 100.0 39 AGGTAATGAA ........................ TTGGGAGTATATAGTAGAAATACGGTGCATTGGGTAAAA 728563 24 100.0 38 TTGGGTAAAA ........................ TGAGTTCTTTAACGGATTCATGTGGTGATTAAAAAATA 728625 24 100.0 39 TTAAAAAATA ........................ ATATAGGTTGCCAAATGATTCTATAACAATTAGTATTCT 728688 24 100.0 40 TTAGTATTCT ........................ CATTTCTGCTTCTATGCAATAAGACCACTGCTCTGCTTTT 728752 24 100.0 40 CTCTGCTTTT ........................ TTAAAGCACCGTTCAGGTCACTATGAAGCTTGTGTCCTCT 728816 24 100.0 39 TGTGTCCTCT ........................ TGCTACCGTACGGAGTGGCGACCCGTACGGTAAAGAGCG 728879 24 100.0 39 GTAAAGAGCG ........................ ACTTCAATTACGCTTTTGTCGCCATATGTTATCAGTCTT 728942 24 100.0 40 TATCAGTCTT ........................ CCAGGAATGTAAGAAGATTAGCAATTCGAAAAAAGAATTC 729006 24 100.0 40 AAAAGAATTC ........................ TTCACTATCAGCTTTATGTGATAATTTCAGTCCGATTTAA 729070 24 100.0 39 TCCGATTTAA ........................ TTGTCTCACCATCTAATTCTATTGCTTTCTCATAATCAT 729133 24 100.0 42 TCATAATCAT ........................ AAAATAAAAATCATTTTACAATCCTTTCTATTTTATCAAGAA 729199 24 100.0 41 TTATCAAGAA ........................ AAATTAGAGCCATTAGTACGATTAATATTAGACGTAACTGA 729264 24 100.0 40 ACGTAACTGA ........................ TAATGTGTTAAATCCTCCCTGGATTTACTTTGTACATCTG 729328 24 100.0 45 TGTACATCTG ........................ TTGGGTTATGTAAGTCGGGTCGAAGAAGAACAGCATAGAAGTAAT 729397 24 100.0 42 TAGAAGTAAT ........................ AAAGACCTCTTCAGAGTGGCAAATGTACCTATCATTTTGGTA 729463 24 100.0 40 CATTTTGGTA ........................ ATGAGAACTCTATATTTGACCATCTCCACATAGAATAAAA 729527 24 100.0 39 TAGAATAAAA ........................ GGTCACGAAAAAATAAGAAAGAAATAGTAGAATTTGAAG 729590 24 100.0 41 GAATTTGAAG ........................ GGTTTGCAGACCCCGCCACTTACTCTCTGTCTTCTCCTCTA 729655 24 100.0 40 TTCTCCTCTA ........................ CTGGTCTAAATAGTGGATTTTTAGGAGCGAAATCATTAAC 729719 24 100.0 40 AATCATTAAC ........................ TTAGTAATTATCACAACAGTAAAGTCAGTGCCGAAGCTTC 729783 24 100.0 38 CCGAAGCTTC ........................ TAAGTCAGAGAATCACAGCGGAACTTTATCAATTATTG 729845 24 100.0 45 TCAATTATTG ........................ GGTAATGGAGTCGTAGGCGGATCAGTGCCCACTACAACAATATTT 729914 24 100.0 42 AACAATATTT ........................ ACGCGACGATATGGCAAACTTCTCCGCAACAGACTGCACAAT 729980 24 100.0 47 ACTGCACAAT ........................ CTGTCAGAAGAGGGATTTATGTTTATGAGCTTACAGAGAAGGGTCGG 730051 24 100.0 40 GAAGGGTCGG ........................ TCAAGGAATTCTACAATGTCATAATTTCTATATTTTTTAT 730115 24 100.0 39 TATTTTTTAT ........................ CCGGTATTTGGATTTATCGCATACACTAATTGTTCAACC 730178 24 100.0 46 TTGTTCAACC ........................ AGAGCGATCTATCCAGTAGAGATTAACGAAAAATAATTTTTTTCAT 730248 24 100.0 42 TTTTTTTCAT ........................ CTATACTGTAGGACGTTTTCTGAGTTACACGAGAGCTTTAGA 730314 24 100.0 39 GAGCTTTAGA ........................ GTTGTCATGGATGACGAGCCAAGAAAATGCGATAATAGT 730377 24 100.0 40 CGATAATAGT ........................ CACACTCACTTCGTTACGCATTAATTAGCTATTTAGCGAG 730441 24 100.0 43 ATTTAGCGAG ........................ ATAATTTGGTTGCTAACGTTAATCATCAACAAAAGATTGTCAA 730508 24 100.0 41 AGATTGTCAA ........................ ATCGCAATGCTGGGAATTGGGTGGTGGCTAGGTTCTTCATT 730573 24 100.0 39 GTTCTTCATT ........................ CTCCATAGGAATTAAATCTAGATTGTCCATGACATTGAT 730636 24 100.0 41 TGACATTGAT ........................ ACAATTTCAGCATGCACTGCGGACGCTTATGTTTGTTATTC 730701 24 100.0 42 TTTGTTATTC ........................ TTTATATACCAATAGAAGAACGTGAACAGATACCGCCAGATG 730767 24 100.0 37 CCGCCAGATG ........................ TTATAAAGAGAAATTTTTAGGTTAAGGGAGAAAATTA 730828 24 100.0 42 GAGAAAATTA ........................ CTGATCTTTCTTGAAATCTTCCCAATCAATGTTTACTCTAAT 730894 24 100.0 41 TTACTCTAAT ........................ CATAAATATGAGTAAGACATTAGAATACATCAAAAAAATGT 730959 24 100.0 40 AAAAAAATGT ........................ CTGAAACTACTGTCGTTTCTGTCGTTAGCGTCAACTAGAA 731023 24 100.0 43 TCAACTAGAA ........................ ATACGCCGAATTAGAGCTAATCACTGAGAAATACGGTATATCC 731090 24 100.0 40 CGGTATATCC ........................ TTACTCTATAGCTAGTGTCATACTTTAAGGCAAGAAAATC 731154 24 100.0 42 CAAGAAAATC ........................ TTTTGCATACTCTCCCCCTCTGTCTATTTAATTATTCGTTTG 731220 24 100.0 39 TATTCGTTTG ........................ ACGTCTATTTCTTCCTACCGGAGCAGATCGATAACTTTA 731283 24 100.0 40 GATAACTTTA ........................ CTATTAAAAGCACAAATTCAGGAATATGTTTAAAAATTTG 731347 24 100.0 44 TAAAAATTTG ........................ AGATGTAGTTAGCCCACCTATTGGTGGAGGATAATTATTTTGTT 731415 24 100.0 40 TTATTTTGTT ........................ CGGCTGCAAAGTATCATATATTCAGTTTTTCGCACTATTG 731479 24 100.0 40 CGCACTATTG ........................ TCAACTTTGTATCGTACCTTAACGGTGTGATTTATATCGC 731543 24 100.0 39 TTTATATCGC ........................ TACGTTACAAAAACTGAATAAACACCCCAGTTTACAGAG 731606 24 100.0 44 GTTTACAGAG ........................ ACGACTTCAACCCCACCACCTAACGATAAACCATATTTCTTAGG 731674 24 100.0 41 ATTTCTTAGG ........................ AAGTTTTTATTTTTTCTGATAATTTATTGAACGAAATGGAC 731739 24 100.0 40 CGAAATGGAC ........................ CACTGATAGGGATTGCCATTACTGTGATTATTGCACTACT 731803 24 100.0 39 TTGCACTACT ........................ TTTAAAGTCTAGCTTACCGTTGTCGAACTTCATAAAGAA 731866 24 100.0 40 TCATAAAGAA ........................ GCCTTTGCAGGAATTTCTAAAGGATAAGAATAAACAGGAA 731930 24 100.0 40 TAAACAGGAA ........................ AAGAAACTACAACACCACCGTCAATTTCGAAGTTCAAACC 731994 24 100.0 39 AGTTCAAACC ........................ AAGAACAGAAAGGAAAACGATCTGAAAAGGAGAATAATA 732057 24 100.0 39 GAGAATAATA ........................ ATAAATTATCTTCAAGAAAGAGGAAAAAGTGATATACAA 732120 24 100.0 39 TGATATACAA ........................ TAGTCAATAAATGTCTGATTGTTGTTTTCCAACTCTAAA 732183 24 100.0 40 CAACTCTAAA ........................ CATACCCGACACAAGAAAGTATGTTGAGGATTATGCCAAC 732247 24 100.0 42 TTATGCCAAC ........................ TTATTCTCAGCGACAAGGTCTTTGAAATAGTAAAATGGAAAG 732313 24 100.0 40 AAATGGAAAG ........................ CTAGATATAATATATTATATTTGGTCCATAGGAGGACCAG 732377 24 100.0 39 GGAGGACCAG ........................ TCTTTAAATCTCATTTCTTTCACCATTTATCTTTTCTCA 732440 24 100.0 40 TCTTTTCTCA ........................ AAGAAAATAAAAAGATTGAAATTCTTAAAGCTTACAAGAG 732504 24 100.0 39 CTTACAAGAG ........................ TTGGAATATTTTTACAAGGTGTAGAATTAATTGGAATTT 732567 24 100.0 ATTGGAATTT ........................ TGAGGGTTTT ========== ====== ====== ====== ========== ======================== 115 24 40 CTTTCAATTCTATAGTAGATTAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.83%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [18,353] Score: 0.18/0.18 # # Final direction: R [0,4.95 Confidence: HIGH] >NC_017278 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1108124 36 100.0 39 GAGGGGTACC .................................... CCCAAAGCATGGCCCAGATGAGGCTCGCAAGGGCGCTGG 1108199 36 100.0 38 AGGGCGCTGG .................................... GTAAATGTCGCCACCCTGAACATGAATCTCCAGCCTAG 1108273 36 100.0 34 TCCAGCCTAG .................................... GTAGCCGGGCGCACCTACGAGAGCCGCATCCTAG 1108343 36 100.0 43 CGCATCCTAG .................................... GCTAGGGGGCGCTAGCCCGCCAGTGTAGCCACATGGGCACTGG 1108422 36 100.0 37 TGGGCACTGG .................................... TGCCCCGGCATGTGGGTGCCCGGTACCTGGCGGCCCA 1108495 36 100.0 43 TGGCGGCCCA .................................... CCGGTAGGCAGTCCGTTGAGCGCGTGGCCCCAACCCTCGGGAT 1108574 36 100.0 40 CCCTCGGGAT .................................... TGCAGATAGCCCCCTCACGAATAGTGACCCGCCCCCCACC 1108650 36 100.0 40 GCCCCCCACC .................................... TGCAGATAGCCCCCTCACGAATAGTCGACCGCCCCCCACC 1108726 36 100.0 40 GCCCCCCACC .................................... CTTGCAACATACCCGCCATCAGGGCTTGGGACGGCGTCAT 1108802 36 100.0 37 ACGGCGTCAT .................................... CTGTGGAGGCGGCCATTAGGGCCGAACTGGATCACCA 1108875 36 100.0 41 TGGATCACCA .................................... TTCCAACTCCTTCTCCCCAAACATGGCTCACCCCCTACGCC 1108952 36 100.0 36 CCCCTACGCC .................................... TGTGTGCGGCAGTCCTTGCACCTGTCGGGGTAGCGC 1109024 36 100.0 39 GGGGTAGCGC .................................... TTCTCCCAGGCCAGGTTCCACCTGGCCTCCAAGACCTCC 1109099 36 100.0 40 CAAGACCTCC .................................... GAATCCTACAGGGACTATTCCAAGAACATCATCAACTAAA 1109175 36 100.0 34 ATCAACTAAA .................................... TCTTTCGTAAAATCTTTTGGTGTGGATTTGCGGG 1109245 36 100.0 38 GATTTGCGGG .................................... AGCCAAGAACCCTAGCGGCGGTAGCGGCGTTGTTCCCC 1109319 36 100.0 40 GTTGTTCCCC .................................... GGGTCACCCGTCTGCCCACCCGCCCAGGCCGCAAGGGCCA 1109395 36 97.2 GCAAGGGCCA .....................T.............. TCCTCGGGCAGGGACCAGTACCGCCGCATCCGCCGGGAGG ========== ====== ====== ====== ========== ==================================== 18 36 38 GTTGCAAAAGTGGCTTCCCCGCAAGGGGATTGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-9.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [43.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [392,147] Score: 0.18/0.18 # # Final direction: F [1.6,0 Confidence: HIGH] >NC_017276 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 736642 24 100.0 39 AAAACCCTCA ........................ ACACTGGGCGATAACGGGAACGACAGGGGCGGGAAAGAC 736705 24 100.0 40 CGGGAAAGAC ........................ TTTATTTTTTCAAACTAATTCGCAAAAATTGAAAGTCGAA 736769 24 100.0 41 GAAAGTCGAA ........................ TATAATTATCTTTAGTCTTCCATCCATGGTATTTCAGAAAA 736834 24 100.0 44 TTTCAGAAAA ........................ TATAAATATGGTGTCAGTGACGAATTAAAAATAACATAACCAGT 736902 24 100.0 40 CATAACCAGT ........................ TTACTTCTTAGTGTTTTTACGAAAGTGAAAGCATTATCGC 736966 24 100.0 42 GCATTATCGC ........................ TCAATATATCTTCCAATGCTGTTTTTGATATAGTCGACAACC 737032 24 100.0 42 GTCGACAACC ........................ GAAATAGAAAAAAGCTTTAAGAATTAAATATCTCTTCTGCCG 737098 24 100.0 40 TCTTCTGCCG ........................ AAAGAAGATCAAGATTTAAGATATGTAATGACCTTTGGAC 737162 24 100.0 39 ACCTTTGGAC ........................ CAACTTTAACACCAATTTTTTGGTTAATGGCACATAAAA 737225 24 100.0 40 GCACATAAAA ........................ TCATCTAAAACGTAGATATTGTATAATGGGGGCATTCTAT 737289 24 100.0 37 GGCATTCTAT ........................ ATATTGCTTTAATCCTCGACCTACTGTCCTTAGTTAT 737350 24 100.0 39 CCTTAGTTAT ........................ CACTAATTATTGAACTAAGATGGGTTTTGTAAACTGTCC 737413 24 100.0 41 TAAACTGTCC ........................ AAAAAATAGATATTACTTTATGCTTTGTCTCCTAGAGCGAA 737478 24 100.0 39 CTAGAGCGAA ........................ TATAATAAATATTATGTATATGGTTTGATTTACTTGTTA 737541 24 100.0 43 TTACTTGTTA ........................ ATGTTGATTATAGTTAACTGTCCATTTTGATAAATTTCTATTC 737608 24 100.0 40 ATTTCTATTC ........................ TTAATTTTATCATCACCCTATTTTCTCTTGCTAATAACTT 737672 24 100.0 42 CTAATAACTT ........................ AATGTATACACTTGATAAATTGGAATTATAACTTTCAATCCA 737738 24 100.0 38 TTTCAATCCA ........................ GTCTCAAATATGTAGCTATTGCTGAACGTTATGAAAAA 737800 24 100.0 40 TTATGAAAAA ........................ TGACTGTTGATATAAGCCGTATCATTAATGCGTATAAGGT 737864 24 100.0 40 CGTATAAGGT ........................ TTATTATATACGATAATATCATAGCCAACGTCTTTCAACA 737928 24 100.0 37 TCTTTCAACA ........................ CCACCTGGCGTGATATAGATATTCTTATATTCAAGCA 737989 24 100.0 37 TATTCAAGCA ........................ TTACTAAGAAATACTGAACCATACATATTATTTCTAG 738050 24 100.0 45 TTATTTCTAG ........................ ATTATAGAGATATGGACTCTCACAAACAAAAGAACTGTAAACTGG 738119 24 100.0 42 TGTAAACTGG ........................ ATATTGATTGATTAAAATAGCGTTGTTTAGATAGTTGTTAAT 738185 24 100.0 44 AGTTGTTAAT ........................ GTTATCGTACTTAATTAATATGTTGAATGGTAACGTTATGTCTA 738253 24 100.0 39 GTTATGTCTA ........................ TCATACACCTTGTGATTAATTTTGTTTGACTTTAACGCT 738316 24 100.0 40 CTTTAACGCT ........................ AAGTTTATTACCATTTTTGCTGAAAACGAGGATGAGGCAA 738380 24 100.0 45 GATGAGGCAA ........................ TTAACACTAGAATTTTAACGTCTTCGTCACCGATATGATATTCCT 738449 24 100.0 44 TGATATTCCT ........................ CTTGTTCTTGTACTAGTTGGTCTGGCACCTCGACTATAACTTTG 738517 24 100.0 43 TATAACTTTG ........................ TCATCAGAGACCCCATCCTTAACTTTCTCATCGCCTTGGAAGG 738584 24 100.0 41 CCTTGGAAGG ........................ TCTATTCTTCCAATACCTCTCTAATTCTCTAAATTCCTCCT 738649 24 100.0 38 AATTCCTCCT ........................ AGTTCATAGAGCCCTATGGGAATCCCTACTAATCCCGC 738711 24 100.0 47 CTAATCCCGC ........................ TTTGTGCTATATATAATGTAAGCTTCTGATGAATTGAAAAATATCTG 738782 24 100.0 42 AAAATATCTG ........................ TTTTTCAGCGTCAGGCCAGACAGAAGCGATAGTTCTATTCCT 738848 24 100.0 41 TTCTATTCCT ........................ TTCTCTATTCCAGCCATCTCAACAACTCCTCCTCTTTAACC 738913 24 100.0 42 CTCTTTAACC ........................ GTTTCACTAGACCGTGACTGTCGTTTAGCTCCAGCGGACTCG 738979 24 100.0 45 AGCGGACTCG ........................ AAAAATATTTATAGAGAGAGATGAGTGAAAGTATATGGCAATAGG 739048 24 100.0 39 TGGCAATAGG ........................ TTTTTCAATATAAAACTACATTCCTGCCATGAACCATCT 739111 24 100.0 42 TGAACCATCT ........................ GAGAAAGATACGTGTTATCTATTCGTAGAGCTTCTTATTCCT 739177 24 100.0 41 TCTTATTCCT ........................ TCGTTTTTTAGGGAAGAGTTTGGCGAGTGTGCAGCTTATTA 739242 24 100.0 41 CAGCTTATTA ........................ TCGCTATTATTGTCAAAGAAATAATATACTTTTATCTCCTG 739307 24 100.0 39 TTATCTCCTG ........................ TTTTTATCAACAATAACCTGAAATTCCTCGAATCTAAAT 739370 24 100.0 43 GAATCTAAAT ........................ CTCAATATTTTCAACCGACTGGAATAATATAATAAATCTGAAA 739437 24 100.0 39 AAATCTGAAA ........................ TCATTTCCTAAGATCCCTTACATTTTCCAAGTAAGAGAA 739500 24 100.0 38 AGTAAGAGAA ........................ TTAGGAGTCGTAGCACAGGGAGCTGTACAGTCACAGAA 739562 24 100.0 39 AGTCACAGAA ........................ ACTATATACTCATAATCTCCTATTATTTGCCTCTCGGCA 739625 24 100.0 39 CCTCTCGGCA ........................ TAAGTGTTACGATCTTTTTTACCGACCCTTTTTCTGATT 739688 24 100.0 38 TTTTCTGATT ........................ ATTCTGTTCTTTGAGAACGGGTATGAGACTATCTTTAG 739750 24 100.0 40 CTATCTTTAG ........................ AATATAATTCTTGTAAGCCTAACACAATTTTTCTAACTTG 739814 24 100.0 41 TTCTAACTTG ........................ ATTCTGTTGTAATAGTTCTTGTAATTCTTGTAATGTTAACA 739879 24 100.0 40 AATGTTAACA ........................ TCACTCTATTAGGCTATTGTTGTTTGTGCTTCTTCCCTGT 739943 24 100.0 40 TCTTCCCTGT ........................ AAAATGTTAAACATTCTAAGATCTTGAAAATCTGTTCTTG 740007 24 100.0 39 TCTGTTCTTG ........................ TCTTCTTAGTTACTTTGTTTACGAAATCAATTGCATCCT 740070 24 100.0 37 ATTGCATCCT ........................ ATTTTGGGTTGAAAAATAATTATATAATTAATAACTA 740131 24 100.0 43 TTAATAACTA ........................ GGCTGGATAAACTGCACGTGCACCGGTGTTTGGCTAGCGGGCA 740198 24 100.0 44 CTAGCGGGCA ........................ GCGGGAATTGGTGTGGAAACTCTATCACAATCCACCTTCTCCAG 740266 24 100.0 43 CCTTCTCCAG ........................ ATGGAATTCTTTCTATATACGCGACCTTTAGGATAACTATAAT 740333 24 100.0 40 TAACTATAAT ........................ GCTAGCTGCGAAATTTGTATCGTTAGCTCGTAAGGCAGAC 740397 24 100.0 42 TAAGGCAGAC ........................ CATTGACCTTAAACGTTACAACTCTCACGGGATCACCTCATA 740463 24 100.0 39 TCACCTCATA ........................ TTATTTTATCAGTAGGTACACCTCTGACTATTTTTAATT 740526 24 100.0 41 ATTTTTAATT ........................ ACACTGTATGTTATGATATGAAAACCTGGAAGGAACTCGAT 740591 24 100.0 44 GGAACTCGAT ........................ TTTTGATTTATTTATACTGTTTATTAACCTTAAGATTTTTTTCA 740659 24 100.0 40 ATTTTTTTCA ........................ AGGAATGTAAAATGTACCGCCCTAGGAAACACGAAACTCC 740723 24 100.0 44 ACGAAACTCC ........................ TCGGAAGAGATAGTTAATTCAATAGTTGTTTTTTCAGTCTTGGT 740791 24 100.0 37 CAGTCTTGGT ........................ AACGGTAAAAACGCGTAAAACAACCTATTTTGGGTTG 740852 24 100.0 41 TTTTGGGTTG ........................ TTCTGCACTACTCCTAACCTTAGTTAATACGACACCTATTA 740917 24 100.0 43 ACACCTATTA ........................ AATTTAATTTCCAAAATTACAATTCCTAATGGAATAGCGGGAA 740984 24 100.0 40 ATAGCGGGAA ........................ TTAATTTCAACAAAGAAAGAGCCGAATTACTTAACGATCT 741048 24 100.0 42 TTAACGATCT ........................ TATACTGGAATGAACCCAATACTAACTTCTACATATGCACAA 741114 24 100.0 38 ATATGCACAA ........................ GCAGGGTTCGTAGATACTTAAAAGAGCTGTACGGGGAA 741176 24 100.0 41 GTACGGGGAA ........................ TCCTCTGATGTTGGTGCTAGTTTTACTATCAGCGATGGCAA 741241 24 100.0 39 GCGATGGCAA ........................ AATTTGCATCTTTATATAGAGAGTACAAGTTCTTTATCT 741304 24 100.0 40 TTCTTTATCT ........................ TTTCCAGAACACGAATCTCGTCTTTTAGTTTATTTAATTT 741368 24 100.0 43 TATTTAATTT ........................ TAAATTGTATACATTTCACCTGCTAATTTATATATAACAACAT 741435 24 100.0 43 ATAACAACAT ........................ ATTACTGGATCTTTGAGTCCTATTATTCCTATTACTTTGTTAT 741502 24 100.0 42 ACTTTGTTAT ........................ ATGATCATACATCATGTCATAACTTTTCATGAGTTTCTACGC 741568 24 100.0 41 GTTTCTACGC ........................ TTAGCAATAATTACGCCCGAGATCATAGGACTGGCTTATGG 741633 24 100.0 39 TGGCTTATGG ........................ TCTGTTACGCCGAGTGCCGGTAACACTTGAGCCATTTGC 741696 24 100.0 39 AGCCATTTGC ........................ CAGTTAATGTCGTTAAGTTCTAGGTTTAGCAAAAGTCGA 741759 24 100.0 39 CAAAAGTCGA ........................ TATATTAAGGAGATTCCTAATTCTGAATGCTAACTCTTT 741822 24 100.0 37 CTAACTCTTT ........................ GGTCTAGCCGTAATTAATGGGAAAAATTGATATGACT 741883 24 100.0 40 TGATATGACT ........................ TTTGTAAATTGTATTATATATCCATTCATATCTACAGATC 741947 24 100.0 40 TCTACAGATC ........................ GCTCCACCGCCTTTTACCATTCCCTGAATATGATAATAGT 742011 24 100.0 41 TGATAATAGT ........................ CTTTCTTTCTGCTTTTCGTACTAGGTTTTTCTTCTTTTTCT 742076 24 100.0 39 TTCTTTTTCT ........................ AAAGTTTCACCGAGTGGTCTATGGTTATTAATAAAATAT 742139 24 100.0 49 AATAAAATAT ........................ GAGTAAAATCCTAACTTTGAAAGGTAGGCGTCTAAAAAATTGTTGTCCA 742212 24 100.0 45 TTGTTGTCCA ........................ AAAAAAGACTTAATAGTTACAGCAAAAATGGTCAAAAAAATACAG 742281 24 100.0 41 AAAAATACAG ........................ ATACTTTTTAACGTTTTCATTTATCATGTTTCTATCACTAA 742346 24 100.0 42 CTATCACTAA ........................ CTCCTTTTTCTCCTATAGTAGGAATAGATAAACAACTTCGCT 742412 24 100.0 39 CAACTTCGCT ........................ TTCGTACTGTCCTCTCAGCAAAGCCCTATATTTTTTCGT 742475 24 100.0 42 ATTTTTTCGT ........................ AAAGGAACACCAATTCCTATTCCTACAGCTGCAGCTGTGCCG 742541 24 100.0 41 AGCTGTGCCG ........................ TTATTGAATAAAACAGAGTACAAAATATTTAGTGGTGATAA 742606 24 100.0 GTGGTGATAA ........................ TATTATGGCC ========== ====== ====== ====== ========== ======================== 93 24 40 GCTAATCTACTATAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.83%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [291,176] Score: 0/0.18 # # Final direction: F [4.5,0 Confidence: HIGH] >NC_017278 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1331477 36 100.0 36 TTCCGCCTGA .................................... CGTTGTAACTCTGCAGCTTAGAAGTTTACGGGACGA 1331549 36 100.0 39 TACGGGACGA .................................... GTAGGCGCTAGCCCGCTACGCGCCCCCGGGGATATCCCC 1331624 36 100.0 40 GGATATCCCC .................................... TCATAGCCTTAGCTAGGTACGAGTTCATCAGGTTGCGCCT 1331700 36 100.0 42 GGTTGCGCCT .................................... AAATTGTATATGTCATGATTTCCATGCCGGGGTATGATATAT 1331778 36 97.2 41 TATGATATAT .................A.................. TACGAGACCCGCCAGGTCCCCAAGGTGGCCGGGTTCAGGTG 1331855 36 97.2 40 GGTTCAGGTG ..T................................. CCATGCGTGAAAAAATCCAGTTTGGGGTCAACGCCCAGCC 1331931 36 100.0 40 ACGCCCAGCC .................................... ACGCCCTCTTCAGTGAGGAGGGGGAGCCCCTCGAGGAGTT 1332007 36 100.0 38 TCGAGGAGTT .................................... TTTACGAAAGGGTCCTCCGGGCTGTTTCGGAGGAGCTT 1332081 36 100.0 GGAGGAGCTT .................................... GGTACCCCTC ========== ====== ====== ====== ========== ==================================== 9 36 39 GTCGCAATCCCCTTACGGGGAAGCCACTTTTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [8,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.60,-9.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [200,360] Score: 0/0.18 # # Final direction: F [0.41,0.37 Confidence: LOW] >NC_017279 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1452584 36 100.0 30 ACTAGGGTTT .................................... TTTCCAAAGTTTCATTAGTTGAATTTAACT 1452650 36 100.0 30 GAATTTAACT .................................... AGGATATTTTGCTCAATCTGATGATGGCAC 1452716 36 100.0 30 ATGATGGCAC .................................... TTGATTTTAGGATTTGGGATAATAAATATA 1452782 36 100.0 AATAAATATA .................................... AGATATTTAC ========== ====== ====== ====== ========== ==================================== 4 36 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:77.78%AT] # Reference repeat match suggestion: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [56.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [121,146] Score: 0/0.18 # # Final direction: F [0.5,0.27 Confidence: LOW] >NC_017278 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1414652 36 94.4 41 TTTGGGGTAC --.................................. ATCCGGTTCATCAGGCCGAGGGCCGCCACCATCCCGGAGCC 1414729 36 100.0 33 TCCCGGAGCC .................................... CCATGAAGAAACTCAACTTGGCGGCCATCGTGT 1414798 36 100.0 38 GCCATCGTGT .................................... CCGGATGGTGGCTTCGCTACACCATCCAAAATGGAGGG 1414872 36 100.0 36 AAATGGAGGG .................................... GGCACGATACGCCCTCCTGCGGGGGGAGCGGGAGTG 1414944 36 100.0 39 AGCGGGAGTG .................................... CCCGGTCCGACGGGGCATGTGGGCGAATACCACATCATG 1415019 36 100.0 40 CCACATCATG .................................... TAGTAGTGATGGTAGAGATAGGCAGGCGGATAAGGGAGCT 1415095 36 100.0 42 TAAGGGAGCT .................................... CGGCGAGGTAAGGGTGGGGTCGTTTTCCGGCCCCACCGGCTA 1415173 36 100.0 41 CCACCGGCTA .................................... CGGCGCCTCCTCAAGGTCCCCCTTCCCCCCACGCGCTACGA 1415250 36 100.0 41 CGCGCTACGA .................................... AGGTAGGGGAGAAGGCCGGAAACCTGGAGGCTACGCCTGCC 1415327 36 100.0 40 TACGCCTGCC .................................... CTGTTCCACAGAAGAAGGGGGCCCCCGCTAAGGGGAAGGA 1415403 36 100.0 38 AGGGGAAGGA .................................... TTGTCCACGCTCCTGAGCCTGGGATGGGGCCGGGGTGG 1415477 36 100.0 39 GCCGGGGTGG .................................... CAAGGGCAAGCTGGGGTGGATCGTGAGAGGGAGGGCCTC 1415552 36 100.0 GGAGGGCCTC .................................... GGTACCCCTC ========== ====== ====== ====== ========== ==================================== 13 36 39 GTCGCAATCCCCTTACGGGGAAGCCACTTTTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [8,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.60,-9.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [65,420] Score: 0.18/0.18 # # Final direction: R [0,1.23 Confidence: HIGH] >NC_017280 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1431608 36 97.2 30 CCACTAGGGT -................................... TGATTTATTAGTAACCCATCAAGTTGGCTT 1431674 36 100.0 30 AAGTTGGCTT .................................... GCTTTAGGAAATGCTTTAAAACGCTTTGGA 1431740 36 100.0 30 ACGCTTTGGA .................................... ATTTGCAAGGTATATAAAAAATTTGATTTT 1431806 36 100.0 ATTTGATTTT .................................... AGATATTTAC ========== ====== ====== ====== ========== ==================================== 4 36 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:77.78%AT] # Reference repeat match suggestion: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [118,146] Score: 0/0.18 # # Final direction: R [0.5,0.68 Confidence: LOW] >NC_017281 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1497557 37 100.0 29 NNNNNNNNNN .A................................... TCCATTCTCATGAAATATTTAGCCATTAT 1497623 37 100.0 29 NNNNNNNNNN ..................................... GGTAGTAGAATTATCTTTGCTGGTATTAA 1497689 37 100.0 29 NNNNNNNNNN ..................................... GGTAGTAGAATTATCTTTGCTGGTATTAA 1497755 37 100.0 29 NNNNNNNNNN ..................................... TCTAAAATTGTTTCATTTTCATTAGTAGC 1497821 37 100.0 1 NNNNNNNNNN ..................................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 5 37 29 TGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:78.38%AT] # Reference repeat match suggestion: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 97% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [120,146] Score: 0/0.18 # # Final direction: R [0.5,0.68 Confidence: LOW] >NC_017278 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =========================== ====== 1697604 27 96.3 34 TGGGTCATGT -.......................... GGGTTGCCTCACTCTTGGCTGGAAGAGGAGGTCG 1697665 27 100.0 34 GAGGAGGTCG ........................... CCTTTGAGGACCCCACGGGGCGCGGCATACCCAC 1697726 27 100.0 GCATACCCAC ........................... CCGGCACCCT ========== ====== ====== ====== ========== =========================== 3 27 34 CGTAGTCCCCACACGCGTGGGGATGGA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [141,15] Score: 0.18/0.18 # # Final direction: F [0.82,0.41 Confidence: MEDIUM] >NC_017278 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 256084 30 100.0 39 CAGAAGCCCT .............................. TCGGGTTCCTGGACGGGCATACTTCACCCCCATCCTGTC 256153 30 100.0 36 CCATCCTGTC .............................. CAACGGACACTACCTTGCCGACGCCCTGGAAGCAGG 256219 30 100.0 38 TGGAAGCAGG .............................. GAAAGGGGGCGGTACATGGTGTCGCCGTACCTAGCCGC 256287 30 100.0 39 ACCTAGCCGC .............................. CCTCCGGAGGCTCGCCAGCCTCCGCCCCACTATTTCGGG 256356 30 100.0 41 CTATTTCGGG .............................. CTGCGGGACTTCCACACCACCCCCCGGTCCAAGAGCCGCCC 256427 30 100.0 39 AGAGCCGCCC .............................. GGCTAGGGCGGCCATAGTTTTGGGGGCGGGCTCAGTGCC 256496 30 100.0 35 GCTCAGTGCC .............................. AAGGCCCCCAAGGCCAAGGCGGCCCCGGGGGAGGT 256561 30 100.0 36 CGGGGGAGGT .............................. CTTTCAATGAAAATAAAGCTAGATTTGCATTAAGGT 256627 30 100.0 37 GCATTAAGGT .............................. AAGCGTGCGTTTACCCATATGATATCAGCTTTTGCCT 256694 30 100.0 35 GCTTTTGCCT .............................. ATGTTGAAGCATGCTATCCAAAGCATGCTTCAGTA 256759 30 100.0 39 TGCTTCAGTA .............................. GGGGGGCTTGCGCTAGGTGGCCCTCATGGGCGATAAAGG 256828 30 100.0 36 GCGATAAAGG .............................. CAGAGCAGTCCCGTAGCCTATGGCCGCATACCGAAG 256894 30 100.0 39 CATACCGAAG .............................. GGGGGCGGCCAAGGCCGAGGCCGAGGCCCCCAAGGCGGT 256963 30 100.0 36 CCAAGGCGGT .............................. CGCCACGAACTCTATTGGAAACGAACTTTTTGAGGG 257029 30 100.0 37 TTTTTGAGGG .............................. GAGGGTCATGATGATTGAGAAGATTTGGGGCATGCTC 257096 30 100.0 38 GGGCATGCTC .............................. AGGGTGGCGGTAGCAGCTTGGGGGTCCATGGCCTCCAC 257164 30 100.0 38 TGGCCTCCAC .............................. GAATAGCCTGCTGGAGTACCAAGAAGATGCGGTTACCG 257232 30 100.0 GCGGTTACCG .............................. AGCAGAAGCT ========== ====== ====== ====== ========== ============================== 18 30 37 GTTTCAAACCCTCATAGGTACGGTCAGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.40,-2.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [18,188] Score: 0.18/0.18 # # Final direction: R [0,0.82 Confidence: HIGH] >NC_017278 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 265902 30 100.0 38 TATACCTGCT .............................. AGGGTGCGGACCACCAAAGCGCCCCCCGCGTACTCAAC 265970 30 100.0 37 CGTACTCAAC .............................. AGGGCAACCTGTGCGCCCCAGGGCACACCACTAACTC 266037 30 100.0 41 CCACTAACTC .............................. GGGTTGACCTCGGCCTTGGGGACCCCCTTATCGGCCTTGGG 266108 30 100.0 37 CGGCCTTGGG .............................. GGCCGTGCACGGGTAGGGGGGTGGACCGGGACAGCCC 266175 30 100.0 38 GGGACAGCCC .............................. TGAGGCCCTCCATAGGGCTTGGCGTAGGGGGTGGGAAG 266243 30 100.0 39 GGGTGGGAAG .............................. TCGCTGTTCTCCATCTTTTTCCTGCGTGGGCTCCCAATG 266312 30 100.0 40 GCTCCCAATG .............................. AGGGTATGGACCCGGGGGCGGTTGTAGCCGCCCTTAAACG 266382 30 100.0 38 CCCTTAAACG .............................. GCACCCACTTGGTGAACAAAGTTTTTGCCACACGCCTT 266450 30 100.0 35 CACACGCCTT .............................. GACGGCCTGGACCCCCAGGCCGTTGCCGCCCACTT 266515 30 100.0 37 CCGCCCACTT .............................. CCTTCCACAGCAACTTTTACTTTGACCATAACTCCTC 266582 30 100.0 37 ATAACTCCTC .............................. GGCTTCGCCTTCGCGGCACCATCCTCTTCATCCCCTG 266649 30 100.0 37 TCATCCCCTG .............................. TATTCTGGGGGCGGGACCGCGTGTCCTGCCCCACACC 266716 30 100.0 38 GCCCCACACC .............................. CCATGCGCCGCGCCATGAAGACGGGAAGCCAGCCCCCT 266784 30 100.0 38 CCAGCCCCCT .............................. GTTCCTCAATAGGCCACTACGGGGTCAACCCCGAGGGC 266852 30 93.3 CCCCGAGGGC ............................CT ATGTACAC ========== ====== ====== ====== ========== ============================== 15 30 37 CTTTGAACCGTACCTATAAGGGTTTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.80,-1.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [186,2789] Score: 0.18/0.18 # # Final direction: F [1.05,0.18 Confidence: HIGH] >NC_017278 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 87978 29 100.0 32 TAGATCATCT ............................. TTCCGTGCCGCCTCCCATATCTCTCCCGCCTT 88039 29 100.0 31 CTCCCGCCTT ............................. GCATCTTTCGCGAACATGGGCGGCGCCCCCC 88099 29 96.6 32 GGCGCCCCCC ............................C GGGAGGGCCTCGTTCAAAACTTCCCTCCCCTC 88160 29 100.0 CCCTCCCCTC ............................. CTATTCGGAAA ========== ====== ====== ====== ========== ============================= 4 29 31 GTAGTCCCCACGCACGTGGGGATGGACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [149,363] Score: 0.18/0.18 # # Final direction: F [0.78,0.18 Confidence: MEDIUM] >NC_017278 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 268040 30 100.0 39 NNNNNNNNNN .G..TTGA...GTACTG.G........... TTGCCGTTCTCCATCTTTTTCCTGCGTGGGCTCCCAATG 268109 30 100.0 37 NNNNNNNNNN .............................. CGTTTCCACTATTATGGCTTGGACCCGTGGGCTCGGG 268176 30 100.0 36 NNNNNNNNNN .............................. GTGGAGAGCTTGGACCCGGGGGCGGCCGCCAGCCAC 268242 30 100.0 38 NNNNNNNNNN .............................. TGGGGGCTATGGTATCATCGGCCCACGGGGAGAACAGG 268310 30 100.0 36 NNNNNNNNNN .............................. CTACCACAGGCTGGATGGTACCGCTCCCGCACGGAG 268376 30 100.0 38 NNNNNNNNNN .............................. CCTCTTCATCTTCATCCTTATCCCCCCTTTACACCCTC 268444 30 100.0 37 NNNNNNNNNN .............................. TCGGGGAGGAGGCTTCAGAGTTCGGCATAGTGCTAAT 268511 30 100.0 40 NNNNNNNNNN .............................. TCCTCCGAGAGGATGGCGTAGATGTGCTCCTCCCGGACCA 268581 30 100.0 35 NNNNNNNNNN .............................. GAAGCCCAGCGTAAAAAAGAAAAATTTAAAAGCTA 268646 30 100.0 38 NNNNNNNNNN .............................. TGCCCCCCAGGAGTTTGAGGGGGCGTGAGGTTGAGGAG 268714 30 100.0 38 NNNNNNNNNN .............................. TAGATTAGAACTAGACCAAACTCGGTCTCCTCCTCAGA 268782 30 100.0 39 NNNNNNNNNN .............................. TCGGGCCGAGATAAACATCAGCCCGCTCCCATTCTTCCT 268851 30 100.0 36 NNNNNNNNNN .............................. GGAAAGGATCAAGACGGCCAAGGGGCGCAAGACCAA 268917 30 100.0 38 NNNNNNNNNN .............................. TGGGGTCTAACTGACCCTGTACCCCCATGGTGCCACGG 268985 30 100.0 36 NNNNNNNNNN .............................. AATGAGTTCTATGGCTTTCTCTTCCATCCTTTCACT 269051 30 100.0 40 NNNNNNNNNN .............................. TCGTGAGGTCGGCGTACCTCGGGAGGACTAGACTAGGCTA 269121 30 100.0 37 NNNNNNNNNN .............................. CCTAACCTGCCTAGCCTGCTTGCCTAACCCGCCTAGC 269188 30 100.0 36 NNNNNNNNNN .............................. AAAAGATTTGGGACATGCTCCAGCAGGCTATTCAGG 269254 30 100.0 37 NNNNNNNNNN .............................. AGCCCGCCCCCCTTTAGGGTGGACCTAGTCTGCTAGG 269321 30 100.0 37 NNNNNNNNNN .............................. CGCTTCCCCCCTCCCGCATAAATCTTTCCCATTGCCT 269388 30 100.0 36 NNNNNNNNNN .............................. CTGGGGGTGCGGGGAAGACCTCCCTGGCCCGGGACC 269454 30 100.0 40 NNNNNNNNNN .............................. GGTGCGCCGCACTCCTTTCGTCTAAGAGGTCCCGCATCCG 269524 30 100.0 36 NNNNNNNNNN .........A.................... TCAGAAGCCAAACAACAGAAAGAACTATCATCAGGC 269590 30 100.0 36 NNNNNNNNNN .............................. GCTGCCCGGTACACTTCTGGGCCTCGGGTGGCCCAG 269656 30 100.0 38 NNNNNNNNNN .............................T CTTGGAAGCGCTGGACCGCCCAGGGTGAGGGAGGCTGT 269724 30 100.0 1 NNNNNNNNNN .........C.......G..TTGACTGC.T NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 26 30 37 CTTTGAACCGTACCTATAAGGGTTTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.80,-1.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [12-13] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [36.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [70,504] Score: 0.18/0.18 # # Final direction: F [1.05,0.18 Confidence: HIGH] >NC_017294 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 114769 32 100.0 34 AAATTTAACG ................................ ATCAATATATAAATTTATATTTTTATAGCCATAG 114835 32 100.0 34 ATAGCCATAG ................................ ATAAAAGAACTATCTAATTTATTAAAAAAATAAG 114901 32 100.0 34 AAAAAATAAG ................................ ATTAAGTCCAAATTTTAAACTTATAAGATTTCCT 114967 32 100.0 34 AAGATTTCCT ................................ CAGCCTGTTCGGCAAAGGCTAAATGACGTTATGA 115033 32 100.0 34 GACGTTATGA ................................ CTCAAGTTTAACAACACTATAATTGCGGTCATAT 115099 32 100.0 35 GCGGTCATAT ................................ GTAACGTTGATATGATCGTGCTCTTACATCGATAT 115166 32 90.6 ACATCGATAT .............T................GG TGCCAGAC ========== ====== ====== ====== ========== ================================ 7 32 34 GTCGCACCTCACGCAGGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [7,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.70,-8.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [183,643] Score: 0.18/0.18 # # Final direction: F [5.18,0.55 Confidence: HIGH] >NC_017294 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 116969 32 100.0 33 AAATTTAACG ................................ ATCATCTATTTTTAAAACAACAACAGATCCCAT 117034 32 100.0 33 CAGATCCCAT ................................ CACCGTGGTGTTTAATGCTTTTGCCATTGCTAT 117099 32 100.0 35 CCATTGCTAT ................................ TTTTCAATATTATTATCCATATCTAAATTATAGTA 117166 32 100.0 AATTATAGTA ................................ AGTCCTTTCTTATTTGTGAATTATTTGATATAA ========== ====== ====== ====== ========== ================================ 4 32 33 GTCGCACCTCACGCAGGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [7,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.70,-8.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [397,120] Score: 0.18/0.18 # # Final direction: F [4.95,0.37 Confidence: HIGH] >NC_017294 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 737971 32 100.0 34 NNNNNNNNNN ................................ CTTTTGTTGAGGGACTCTCTAAACGCTCTTATAC 738037 32 100.0 35 NNNNNNNNNN ................................ TAAGTATATTAGACAACCATTTAATTATACAAAAG 738104 32 100.0 33 NNNNNNNNNN ................................ AATCTCTGGTTCGTTGAATAATAGTTTTAATAT 738169 32 100.0 33 NNNNNNNNNN ................................ ATTAAATAACAGTATTAAGGATGGTTTTTACTC 738234 32 100.0 34 NNNNNNNNNN ................................ TTCATCTATACAAGATAAAATTTTATTTTCTATT 738300 32 100.0 36 NNNNNNNNNN ................................ ATTAAGAGGTGTCGATGCTTGAGTTAAATAAGATAT 738368 32 100.0 34 NNNNNNNNNN ................................ GACACAATTGGAACAGAAACAACACAAGTAAAAA 738434 32 100.0 33 NNNNNNNNNN ................................ TTGTGCCAAGTTATAAAACTTTTTAAAAATAAG 738499 32 100.0 35 NNNNNNNNNN ...........T.................... GTATAAATCTGCCCTAATTAAAAATCTTATAGTTG 738566 32 100.0 1 NNNNNNNNNN .............................G.A NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 10 32 34 GTCGCACCTCACGCAGGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [7,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.70,-8.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [172,73] Score: 0.18/0.18 # # Final direction: F [5.09,0.37 Confidence: HIGH] >NC_017297 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2359490 30 100.0 35 NNNNNNNNNN GC.C.......................... ATAGATGAAATAGAAATAGTTATAGATTTAATTGA 2359555 30 100.0 36 NNNNNNNNNN .............................. GTTAAAGAAGATGAAAAAAGTAAATAGGTGATATTA 2359621 30 100.0 35 NNNNNNNNNN .............................. GGACATGAAGATATACTAGCCACACCGTTAGACTA 2359686 30 100.0 34 NNNNNNNNNN .............................. ATAATAAATATGCATGTGAATATGTACTTAGCTT 2359750 30 100.0 1 NNNNNNNNNN ..............C............... NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 5 30 35 ATTTAAATACATCTTATGTTATTGTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:80.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [223,1699] Score: 0.18/0.18 # # Final direction: R [0,0.86 Confidence: HIGH] >NC_017297 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2352683 30 90.0 36 AGTTCTCTGC --...................A........ ACATAATCAGATGTTAGAAGTACTTCACGAATTAAG 2352749 30 100.0 37 ACGAATTAAG .............................. TAGATAAAGATAGGACAATAGAATATTTTACATTAGA 2352816 30 100.0 35 TTACATTAGA .............................. GCGGCTATGGGAAACATAGAAGCTGAATCCGAATT 2352881 30 100.0 AATCCGAATT .............................. CATAGTAAAA ========== ====== ====== ====== ========== ============================== 4 30 36 ATTTAAATACATCTTATGTTACTGTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1025,262] Score: 0.18/0.18 # # Final direction: R [0.18,0.68 Confidence: MEDIUM] >NC_017304 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 3480177 30 96.7 36 TGAAAATTTA ...............T.............. GTATTTGAACGGCACATCCTTCAAATCCGCACCATC 3480243 30 100.0 39 CCGCACCATC .............................. TTGCTATAAAAAACAATAGAAATGCGATAGGTATAGAAT 3480312 30 100.0 35 GGTATAGAAT .............................. GAGATAAGCCTTGTTATACTGTTCTGGTTAGACCT 3480377 30 96.7 36 GGTTAGACCT ........C..................... AATTTGTGCATGCAGGATGGGAAAAAATTATTAAAA 3480443 30 100.0 38 ATTATTAAAA .............................. GGAGGGATTTGTATGAAAGCAATGAAAGTTTTCACTAT 3480511 30 100.0 35 TTTTCACTAT .............................. TAGAAGCCTCCAACCAAAGGAAGAATCTATAGGAG 3480576 30 100.0 38 TCTATAGGAG .............................. GTGAGCCTGATGTTTTGTTCCCTTTCCACGCAGGAACA 3480644 30 100.0 40 CGCAGGAACA .............................. GGGTTTAAATCTGTACCAATGCTTGAAGTAGATGGAAATA 3480714 30 100.0 36 GATGGAAATA .............................. TGACTGAAAAGGATGTTATCAAATTGTTTGCCATAT 3480780 30 100.0 39 TTTGCCATAT .............................. AAGAACAAATTGAGAAATTAGGAGTTGAGATATAATGTG 3480849 30 100.0 38 ATATAATGTG .............................. TAATATTGATGGGTCTGACAGTTTCGTCCCTCCAAATT 3480917 30 100.0 39 CCTCCAAATT .............................. GTGCTTGTGATTCAAGTTCATTTTCTGATATAGTCAGCA 3480986 30 100.0 36 ATAGTCAGCA .............................. TCTGTTCAATTGCTGTTATAGTATCGACTTGCATTT 3481052 30 100.0 38 ACTTGCATTT .............................. ACTGTAAGCGAAAATATAACCGGCATAACTCTTTATAA 3481120 30 100.0 35 CTCTTTATAA .............................. CAGGGTAGCTATAACCCCCGCCTCCGGATTCACAT 3481185 30 100.0 31 GGATTCACAT .............................. AGGATTGGATTCGGATTGGATTGGATTGGAT 3481246 30 100.0 36 TGGATTGGAT .............................. TAATGCATTGGGTAAGCTGTGTATGCACTGAATTAA 3481312 30 100.0 35 ACTGAATTAA .............................. GGATATTAAAACCAGGGATGAACAACTTGAAGCAC 3481377 30 100.0 36 CTTGAAGCAC .............................. AACAAAGATTGACATTGGATGCTTCACATTTAATTT 3481443 30 100.0 38 CATTTAATTT .............................. GACGCACTTCCTGAACAAAATTTCATGGCACAATATCA 3481511 30 100.0 40 CACAATATCA .............................. GAGGTGTCAAGAAAGGATGATGGTATGAAGGTTTTAGAGC 3481581 30 100.0 38 GTTTTAGAGC .............................. GCGTTTGTACCCTCTGAGGGGTACTTTCAGGAGTTCCT 3481649 30 100.0 40 AGGAGTTCCT .............................. GAGTATGCAATTTGCAATGATTTCGATTTTTTTGTTACGT 3481719 30 100.0 35 TTTGTTACGT .............................. GTCCTTGCCCTTGACTGCATGAGCGGCGAGCCGGA 3481784 30 100.0 37 GCGAGCCGGA .............................. TGGCAGTAGGCTCTTACTTCCTCAAGGGTGGGTGGTA 3481851 30 100.0 37 GTGGGTGGTA .............................. CCCGGGAGCACCCCAGCCTGGACCAGACCGTCCAGGA 3481918 30 100.0 CCGTCCAGGA .............................. CCATAAAGCC ========== ====== ====== ====== ========== ============================== 27 30 36 GTTTCAATTCCTCATAGGTACGATAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [290,168] Score: 0/0.18 # # Final direction: R [0,5.78 Confidence: HIGH] >NC_017297 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2360473 30 100.0 36 NNNNNNNNNN GC............................ TTTAGAAAAAAATAACGCTTTTGATGATTTATATAA 2360539 30 100.0 36 NNNNNNNNNN ......................G....... GAACACCAGTTACAATAGATGGAAAAGAATATACAA 2360605 30 100.0 35 NNNNNNNNNN .............................. CTTATCGCTATCATAAACTATATCACCATCATAAT 2360670 30 100.0 36 NNNNNNNNNN .......................A...... AGGTGAAGAAATTGGAGATACTTTAGAAGCAGTTTG 2360736 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 5 30 35 ATTTAAATACATCTTATGTTAATGTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:80.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [1206,713] Score: 0/0.18 # # Final direction: R [0,1.05 Confidence: HIGH] >NC_017304 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 976887 30 100.0 37 NNNNNNNNNN ....T.............C........... AAAACTTACCCGAAAGGGAAACAGCATCGGAATTCAC 976954 30 100.0 37 NNNNNNNNNN .............................. ACACCTGAGAAACTCGTGATTGTTCACAAGTACTCAC 977021 30 100.0 41 NNNNNNNNNN .............................. TAGTTAAGTTACGCTCATCAGCTATTGCTTTTACTTTGTCA 977092 30 100.0 37 NNNNNNNNNN .............................. TCTGTTATCTTTGCCACATAATCTCTCCTTTATAAAT 977159 30 100.0 36 NNNNNNNNNN .............................. CCGCAGCAGGGATAGAACTGACAGCAGACTACTGCG 977225 30 100.0 43 NNNNNNNNNN .............................. TAAAAACTCAGGAATGATTTGTATTTCACCGTCTACAGTACGA 977298 30 100.0 36 NNNNNNNNNN .............................. CCAGCTCATAAAGGATAGGTAAAAAGCTGTCGTCTG 977364 30 100.0 39 NNNNNNNNNN .............................. TTTGAAACAGTGAAAAAGATGGGATATACCTTTGTATGT 977433 30 100.0 37 NNNNNNNNNN .............................. ACGGAGGATGGGGAACTATTAGCACTACTATTGGATT 977500 30 100.0 38 NNNNNNNNNN .............................. GAGTTTGTAGTATCTGATAGGTTCAAGGATGAAAACGG 977568 30 100.0 36 NNNNNNNNNN .............................. TAGTATTAGAGAAAACGGGACAGAAGTAACTACAGC 977634 30 100.0 37 NNNNNNNNNN .............................. TAAACTGCACGAATAACTTGGATGAATATGTTTTGGG 977701 30 100.0 35 NNNNNNNNNN .............................. AATGGCTCGGAGCAGTTCGCATGCTTAGTTGACAA 977766 30 100.0 36 NNNNNNNNNN .............................. TACCTGAAGACGTGCTTATTAAGGTTGATGGAAATG 977832 30 100.0 35 NNNNNNNNNN .............................. GAAGAGCCCAAGGAAGAAAAGCCTGCGGACAAGCT 977897 30 100.0 36 NNNNNNNNNN .............................. TTGCTCCAAGCTACTTGTAGGGGGTGTATATATGGC 977963 30 100.0 38 NNNNNNNNNN .............................. CGTCCACTTCTAGCCGCCTTTCGGAGTGTTGACGTCCC 978031 30 100.0 36 NNNNNNNNNN .............................. AAAATAAGCGACCTCAAGGCAGCTGGACTGTTAGAT 978097 30 100.0 38 NNNNNNNNNN .............................. ACCAAATGTTTCATAAGGTATTGCAAAAATGAAATCTT 978165 30 100.0 36 NNNNNNNNNN .............................. GTGTTGAAATTGGCTCAGGCAGCGACAAATTTATTT 978231 30 100.0 35 NNNNNNNNNN .............................. GAAGCCTGATAGTCTTAACAGTGTACTTGATCGCA 978296 30 100.0 36 NNNNNNNNNN .............................. TGTGATTCCCTATTTTTTTATAATTGCAATTTGTTT 978362 30 100.0 38 NNNNNNNNNN .............................. TCATTGGAACTACGGCATGAAGAACTCGCATCGATAGA 978430 30 100.0 37 NNNNNNNNNN .............................. GGAGAATTTGTTATGCAACAAGTTGTAAGGTTTGAAA 978497 30 100.0 36 NNNNNNNNNN .............................. CGGTTCGGACCAGCAATGAAACGTATCAGAAACTGC 978563 30 100.0 37 NNNNNNNNNN .............................. CTGGCCCGCACATTGTTGATGACATCGTTCTCGTTGA 978630 30 100.0 37 NNNNNNNNNN .............................. AAATCACTGAACTCAAGCAAATTGATGTGTCAGAATA 978697 30 100.0 37 NNNNNNNNNN .............................. CCTTTCTGCGTATAAATGGTTCTAACTCTGCAGGTGG 978764 30 100.0 37 NNNNNNNNNN .............................. GCTTCGCAGAAGCAGGAACAACTTTGGCAGGAAAGCC 978831 30 100.0 38 NNNNNNNNNN .............................. CAACCTGGCGCTCATATCGATGGCCGAATCGCTGGAAT 978899 30 100.0 36 NNNNNNNNNN .............................. TTACTTATGACACACCCAAGCCCATTCCGGGGGCGG 978965 30 100.0 36 NNNNNNNNNN .............................. CCGCCAGCTCCGGACGGAAGCGAGGCAACGGCGGAA 979031 30 100.0 37 NNNNNNNNNN .............................. GGAATTATGGCTACGTATTAGAAAGTAAGCTAAAAGC 979098 30 100.0 37 NNNNNNNNNN .............................. AAGAGGAGGAAGGTTTCAGATGGGAGCAGTGGCAGGC 979165 30 100.0 37 NNNNNNNNNN .............................. TCGCACCGGTTGATCAGGCCGGTGCTATCCCACAATT 979232 30 100.0 38 NNNNNNNNNN .............................. AAAGGAGTTGATAGCGATATGCAGAATCAGTCCAATGC 979300 30 100.0 38 NNNNNNNNNN .............................. TTCATATAAATCAAAAGTGAATGTTTTCACTGTCGGAT 979368 30 100.0 36 NNNNNNNNNN .............................. TTTATTATTACATTGCTTAGAAAGGAGGCTGAACAA 979434 30 100.0 38 NNNNNNNNNN .............................. TTCATATAAATCAAAAGTGAATGTTTTCACTGTCGGAT 979502 30 100.0 36 NNNNNNNNNN .............................. TTCCGCGTAACAGCCAACTGCGACAGAAGATTGCCG 979568 30 100.0 36 NNNNNNNNNN .............................. TCTGTTCTACTTTTTTTTACTCTGGACAGTGGTGGA 979634 30 100.0 37 NNNNNNNNNN .............................. TCCTGCGAAATTATGGTTACAGGCGCCCAAGGCGCCA 979701 30 100.0 38 NNNNNNNNNN .............................. GAATCTTCAAACCGAATTCCCGGGATGTTCTGACACCA 979769 30 100.0 36 NNNNNNNNNN .............................. TCGGCCCGTCGCCGGATAAGTTTTTGTCCGGGAGGT 979835 30 100.0 41 NNNNNNNNNN .............................. GCGATATATCCAATTACTTGGCGCATAGTAAAATTATTTGT 979906 30 100.0 36 NNNNNNNNNN .............................. GTATAGAAATTGCCAGGATATGGCAAGAAAAAGAAA 979972 30 100.0 37 NNNNNNNNNN .............................. GTATCTCCAAGTTCAGTAGAACTATTTGATTCATCTA 980039 30 100.0 38 NNNNNNNNNN .............................. GAACCCACGGATATACCGATGTATCCCATGTGAACATA 980107 30 100.0 36 NNNNNNNNNN .............................. TGATAATTGCGCTATGCGGCAACGAGCTAATTAGCA 980173 30 100.0 38 NNNNNNNNNN .............................. TGTGACTCAACTTAGTGATAGGATTTGGCAAACTGCTT 980241 30 100.0 36 NNNNNNNNNN .............................. TCGGGAAGGTACCGACCTTATCCATCATGATGCTTA 980307 30 100.0 36 NNNNNNNNNN .............................. TATAGTAGATGCAGAAGAAGCCTTGCAGGAAATACT 980373 30 100.0 36 NNNNNNNNNN .............................. ACCTCCCTGAAGAAGTTTGGAAGAACATTGACACTA 980439 30 100.0 36 NNNNNNNNNN .............................. CGAAATAGTGACTACCGCATACTGCAAAATCAGGTA 980505 30 100.0 37 NNNNNNNNNN .............................. GGAGTGATAATATGGGTGGAACCTGGACCAGTCAAAA 980572 30 100.0 38 NNNNNNNNNN .............................. CTGCATATACATATGAGCCGTCGCAGCACATATCAGCG 980640 30 100.0 36 NNNNNNNNNN .............................. AGGCAAGAAAACCAATCAAGGATTGGAAAGCGTGTG 980706 30 100.0 38 NNNNNNNNNN .............................. GGGGAATACAGTTTGAACATCAAAATCAGACTGACAAA 980774 30 100.0 38 NNNNNNNNNN .............................. CGAATTGACTGTATTACCTATTCGGATGGAAGAAGAGT 980842 30 100.0 40 NNNNNNNNNN .............................. GGGCTGGATTTGAACTTATCGGCAGAATTGAAATCAGGGA 980912 30 100.0 36 NNNNNNNNNN .............................. TTCTGCCTCGGGGAAGGTCATGATATGTTCAAATGC 980978 30 100.0 36 NNNNNNNNNN .............................. CTCCTCATTTCTAAGCAATTTTGCCTTTGTAATAGT 981044 30 100.0 36 NNNNNNNNNN .............................. TTGTATCATATATTTTTATACTGTCAATAGTAATTT 981110 30 100.0 38 NNNNNNNNNN .............................. CTTGGAAGTGCGGAATTCTCCCTTCCAGGGGATGACCC 981178 30 100.0 37 NNNNNNNNNN .............................. CCAATAAGGTGTATGATGGGGAATTTACTGTTGATAC 981245 30 100.0 38 NNNNNNNNNN .............................. GATAGCACCTATATATTTACGTCCAGTATTAGACTGAT 981313 30 100.0 36 NNNNNNNNNN .............................. CTTTCAATACCTCCTCATTTATACTTTCAAAAAGTG 981379 30 100.0 38 NNNNNNNNNN .............................. AAGCAACGGGATCAAACCATCCAAAATAGTCATCAAGA 981447 30 100.0 36 NNNNNNNNNN .............................. AATGGATTGGATTTTGGAAAATGCTGATATATATTG 981513 30 100.0 36 NNNNNNNNNN .............................. TAAAAGAGGATTTAAAGACCTTATTCATCCCATCTG 981579 30 100.0 37 NNNNNNNNNN .............................. TCTTTAAATGGTGATATTTCTGATAGACTAGTTCTTA 981646 30 100.0 37 NNNNNNNNNN .............................. GTTGTTTTGTGAGGAGGTTTTCAGAAAGTAGATATAT 981713 30 100.0 37 NNNNNNNNNN .............................. TCAATAGCGTGATACAATCAAACTTCATGCGAAGCTA 981780 30 100.0 38 NNNNNNNNNN .............................. GGAAGAGATGAAGACATCGAATACATCCTTGAAAAAAT 981848 30 100.0 37 NNNNNNNNNN .............................. GGTTTAATCGAAGTAATCTTGTCGCCGCTTTTCTTGG 981915 30 100.0 36 NNNNNNNNNN .............................. TCAGAGATGATATGACGAATCAAGTTCTAAATGAAA 981981 30 100.0 36 NNNNNNNNNN .............................. TCTCTTGCAGCCCGTTCTCCAAAATTATCTTCAAAA 982047 30 100.0 36 NNNNNNNNNN .............................. TGAATGTAGCAATTGGGTTTTTCGTTTGGGCTGTCA 982113 30 100.0 37 NNNNNNNNNN .............................. CTAATTCAATATTGATTAAATGACTCTCTATAACAAA 982180 30 100.0 37 NNNNNNNNNN .............................. GTCCAAAAATGGAAAGAAAGATATCCGATGATGAAGA 982247 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 81 30 37 GTTTCAATTCCTCATAGGTACGATAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [229,391] Score: 0/0.18 # # Final direction: R [0,5.78 Confidence: HIGH] >NC_017297 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2374002 30 100.0 58 NNNNNNNNNN T.C.T.T..T..A....A.....T..T..T ATATTATGTTATTGCATTCAACAACAGTTTGATATCAGTCCCCTTATGGGACGTGCAA 2374090 30 100.0 37 NNNNNNNNNN .........T....T..A............ GACTTAGTGAATTTGAAGGATCTGGCAGAGAATTTGG 2374157 30 100.0 36 NNNNNNNNNN .............................. CCCGGGGGTGTATAAGATATTCTTTTTCCTTATTTG 2374223 30 100.0 35 NNNNNNNNNN .............................. GGTATTTCTTGATTAGTTGCAAGTATATTTTCCCA 2374288 30 100.0 1 NNNNNNNNNN ............A.............T... NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 5 30 41 ATTTAAATACATCTCATGTTAATGTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [13-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [189,1951] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_017304 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1914962 30 96.7 36 TACTTGGGAG -............................. TTCTCCTGCGACTCTCCCAATTTTCAAAAAATCCTC 1915028 30 100.0 38 AAAAATCCTC .............................. CATATTCCAAGTGGATTACCTGCCAGAAAAGAGAGAAA 1915096 30 100.0 36 AAGAGAGAAA .............................. TTGTATCCTCCCACTTCTGCAGTTTGGAATACTCTA 1915162 30 100.0 37 GAATACTCTA .............................. TTTACCGCTTTCATCTTTATATGTTGATGGAATGAAA 1915229 30 100.0 37 TGGAATGAAA .............................. GAGAACACGAAAATAAATGTTTCTTTAATCCTGCTGT 1915296 30 100.0 ATCCTGCTGT .............................. GCATAGGTTT ========== ====== ====== ====== ========== ============================== 6 30 36 ATTTCAATTCCTCATAGGTACGATACAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [4786,1384] Score: 0.18/0.18 # # Final direction: R [0.18,5.78 Confidence: HIGH] >NC_017299 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2310663 29 93.1 36 ATCAAAATAA ............TC............... GTAGGTGGAAAAGGTGCAAAAGGTGGAGTAAACTTA 2310728 29 96.6 37 AGTAAACTTA ............T................ TTATATAAGTGAATATAATTTAACAATTCAATGGTTA 2310794 29 100.0 36 TCAATGGTTA ............................. CAACACGAGGTATGGGATGGAACTTATACATTAGAC 2310859 29 100.0 TACATTAGAC ............................. CATAGTAAAAT ========== ====== ====== ====== ========== ============================= 4 29 36 TTTAAATACATCCTATGTTACTGTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.41%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [719,273] Score: 0.18/0.18 # # Final direction: R [0.18,0.68 Confidence: MEDIUM] >NC_017299 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2333111 30 100.0 36 NNNNNNNNNN T...T....T..TA.G.TA.TG........ AACAGTTTGATATCATTCCCCTTATGGCACGTGCAA 2333177 30 100.0 35 NNNNNNNNNN .............................. TAATGTACTGATTTTCAGTAGGTGGGTCCATGTAC 2333242 30 100.0 36 NNNNNNNNNN ..............C............... ATTTATAGAAGATGGTACATATACAATTATTTATTG 2333308 30 100.0 37 NNNNNNNNNN ..............C............... TTTCACTTGATTTAGATAATGGAAAGCTATTACCTTT 2333375 30 100.0 36 NNNNNNNNNN ................C............T TGAAATGATAAGTAAAACACTTTCTTATTACTATAA 2333441 30 100.0 36 NNNNNNNNNN .............................. GATATAGTAATTTATATCCTGGTACAATAAATGAAT 2333507 30 100.0 36 NNNNNNNNNN .............................. TGATGGCTATATAATAAATATAGTTTCGGAAGTCAA 2333573 30 100.0 36 NNNNNNNNNN .............................. TATATTAATATTACAAAAGAAGTTAGAAAATCATAC 2333639 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 9 30 36 ATTTAAATACATCTTATGTTAATGTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:80.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [80.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [211,213] Score: 0/0.18 # # Final direction: R [0.27,0.78 Confidence: MEDIUM] >NC_017304 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1915428 29 100.0 38 AAACACAAAA ............................. GAAGAATGGCTGTGGAATCAATCCAATGAAAAAATAGA 1915495 29 100.0 40 AAAAAATAGA ............................. CTGGAACGGTGATTTGAGAAGAGTAGAGATTAACAAAGAA 1915564 29 100.0 38 TAACAAAGAA ............................. CACGGAACGGTTTTTTGTGTGGAAAACGGTTTGCGCAA 1915631 29 100.0 38 GTTTGCGCAA ............................. ATTTCCAACATGTCTGCTATTTCTCTGCTGTCAATCGA 1915698 29 100.0 39 TGTCAATCGA ............................. CCTTTTGCTTTTTCAAGAGCTGCAATCGCTTTTGCTTTA 1915766 29 100.0 37 TTTTGCTTTA ............................. TCATTATGAAGTTGACGGAAAGCCATATCTTGCAGTA 1915832 29 100.0 37 TCTTGCAGTA ............................. CCCTTCGAACATTTCGATTATGCATGTATTAGAACCA 1915898 29 96.6 41 ATTAGAACCA ........T.................... TGGCTTGGTAAGTATAACACAGAGCAAGAAGCTGAAAATAA 1915968 29 100.0 37 CTGAAAATAA ............................. TTATTTCACTGATTCCAATGCCAATGTTTTCAAGTTA 1916034 29 100.0 41 TTTCAAGTTA ............................. GGATTGGAAGCAGCAACCGCTTCAATGGCAGCTTGTTTAAA 1916104 29 100.0 38 CTTGTTTAAA ............................. CTGTTGCTGGCGCAATTGCAGACCTCGGAAACACCAAT 1916171 29 100.0 38 AAACACCAAT ............................. ACAAACATGCTGGGTTTCCCAGTACCTATGAATAGGAT 1916238 29 100.0 38 TGAATAGGAT ............................. AAGAGGAGGAAGGTTTCAGATGGGAGCAGTGGCAGGCT 1916305 29 100.0 37 GTGGCAGGCT ............................. GAAGCTATTGAAGTGCTGAGCAGGAAGGGGGAAGAAT 1916371 29 100.0 37 GGGGAAGAAT ............................. TCCGGCAGAATGGGATCTTACCGACAGTGCCGGCAAA 1916437 29 100.0 40 TGCCGGCAAA ............................. CTAGACAGTCACGCGCGATTGCCTGTACAATGTTTTCAAA 1916506 29 100.0 37 TGTTTTCAAA ............................. GAGCTTCAGGTATATCAGAGATATTGCAGTAATTTAA 1916572 29 100.0 39 AGTAATTTAA ............................. CACTTGGTGGCCATCAAAGACCACCAACATTTTTTATCA 1916640 29 100.0 TTTTTTATCA ............................. AGGGTGATAA ========== ====== ====== ====== ========== ============================= 19 29 38 TTTCAATTCCTCATAGGTACGATACAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.52%AT] # Reference repeat match suggestion: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [5252,41] Score: 0.18/0.18 # # Final direction: R [0.18,5.37 Confidence: HIGH] >NC_017304 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1930003 30 96.7 38 TAGCCAGAAA -............................. GACTGAATCAAGACAACATTATTGTCGATGCTATTACA 1930071 30 96.7 36 TGCTATTACA A............................. ATGTGAGATATTTACCGCCGCTTGGCTATGGTAATA 1930137 30 100.0 38 TATGGTAATA .............................. TTTTTTGAAGCATAATCCGCTTGAAAATCAAAATCAAG 1930205 30 100.0 38 CAAAATCAAG .............................. TCCAACAGCACCAGAACTTCTATTAGAAGCCCAACTTA 1930273 30 100.0 37 GCCCAACTTA .............................. TTTGGATGAACGGACTTGGGATGAGATGCCGGAAACT 1930340 30 100.0 37 GCCGGAAACT .............................. CATACAGTTGTAAAGTGTTCACCCATTCCCGCCTTGT 1930407 30 100.0 38 CCCGCCTTGT .............................. GTTATTATAGGGAGATTCAATATCTCCCTATAAACTAA 1930475 30 100.0 36 TATAAACTAA .............................. CACCAGAAGATATACCAGCCGATGTAGTATCTGCAA 1930541 30 100.0 36 GTATCTGCAA .............................. TATTTCTCCTTGTTCACTTCCGATTGTGCCTATTCT 1930607 30 100.0 36 TGCCTATTCT .............................. TCCTTTTCTAGCCACCGTGGTATGTAGTATGGGCCA 1930673 30 100.0 37 GTATGGGCCA .............................. CCGCAAGTATTTTCGCAATTTCACTCTTGGTCATTGA 1930740 30 100.0 37 TGGTCATTGA .............................. TATCACATGAAACTATCATTGGTCAACATCCTTGGAT 1930807 30 100.0 36 ATCCTTGGAT .............................. GTATTAGTGGATGTTTACAGAAAAACAGATTGAGGA 1930873 30 100.0 42 AGATTGAGGA .............................. GAGCAGAAAAAATAAGAGTATGTGAATTTTTAGAACGTTGGC 1930945 30 100.0 39 GAACGTTGGC .............................. GATAGGTTGGTCATAGGGCAGAAAGCTGGTGTTGAATGT 1931014 30 100.0 36 TGTTGAATGT .............................. GTGGTACGTTCTGCCATACCATTTAGCCTTATACTC 1931080 30 100.0 37 CCTTATACTC .............................. CTTCATTATCAGTTGGTAGTGTTCAAGTCAATACAAT 1931147 30 100.0 36 TCAATACAAT .............................. CTACGGGCATTTCTCCTAACTCGTAGCTCTGTTGCT 1931213 30 100.0 36 CTCTGTTGCT .............................. CTGATATAATCATTCAATTTCATAGCTTTATTTACA 1931279 30 100.0 38 TTTATTTACA .............................. GTTTCCATCAATACTAATAGAAAGAGTCTCAGTGTCTT 1931347 30 100.0 38 TCAGTGTCTT .............................. CATGGTACCGGTATCAAAAGGCATTACCTGACTTGCAA 1931415 30 100.0 36 TGACTTGCAA .............................. TCTTTCCTCCTGTCGACGTCTACGTCGAACAGTCGG 1931481 30 100.0 36 GAACAGTCGG .............................. ATTACATCCGGTATGTAGCATAGGGAGGCTGAACGA 1931547 30 100.0 39 GGCTGAACGA .............................. ATGTCAAGCCCGATGGCACTGACTACCATCCCGGAAGTG 1931616 30 100.0 37 CCCGGAAGTG .............................. TATCACGGTGCAAGATCTGTATTGATATGGTATAGCT 1931683 30 100.0 36 TGGTATAGCT .............................. TGTTCCGGCTTCTAGTGTTACCGGAGGATCATTTAA 1931749 30 100.0 37 GATCATTTAA .............................. TTGGTCAAGGTGTTGACGAGGACAAAGACAAAATTGG 1931816 30 100.0 39 ACAAAATTGG .............................. TCGTTGTTCGAATGACTTGAACCTTCATTTTGGGGTATT 1931885 30 100.0 36 TTGGGGTATT .............................. CAGGCGCAAACATACAACGTCCAGGGTTTAAACTTT 1931951 30 100.0 36 TTTAAACTTT .............................. TCTAGCCCTATACATATCATACCGCCACCTCCACAT 1932017 30 100.0 35 ACCTCCACAT .............................. ATGGCAATTCTAAAAGCTGCTTATCCCAATTTCTA 1932082 30 100.0 36 CCAATTTCTA .............................. GAACAATCCGACCAGTGGCAGTAGAAGTTTGTTTTA 1932148 30 100.0 36 GTTTGTTTTA .............................. TTACAGAGTTCAAACAGATTCTGGGAGCTACGTATA 1932214 30 100.0 36 GCTACGTATA .............................. CCATACACTATGTACAAAAACCCAACTATTATCCTT 1932280 30 100.0 36 TATTATCCTT .............................. GGATTTTTATAGTCGGTTATACGGTACACGTTAGTA 1932346 30 100.0 37 CACGTTAGTA .............................. GGTGCTAGGAATGATTTGGCTGATTTATACTCTATGA 1932413 30 100.0 38 TACTCTATGA .............................. TTTCTGACTATCGTCAAGCAACCAAAGAGAGTCATCGG 1932481 30 100.0 39 GAGTCATCGG .............................. TTCTGAATGGAACAATTTTGCAAGAACATTGAATACCAG 1932550 30 100.0 37 TGAATACCAG .............................. TAATGGAACTGAATGCCGGTGAGTATAGCCTAAATAT 1932617 30 100.0 37 GCCTAAATAT .............................. GTCTTTGCAGTTTACGCCCGAAATACCAAAGAGGCGA 1932684 30 100.0 36 AAAGAGGCGA .............................. TAATACATAATCATAAATTCAAAAAAGTGGGTTTAA 1932750 30 100.0 36 GTGGGTTTAA .............................. TGAGTATTTTGAAAGAGTAGTTCTGAATGTTTATCC 1932816 30 100.0 37 ATGTTTATCC .............................. CAAGGAAGGAATACTGGGACGACGAAAAACAGAGGTT 1932883 30 100.0 38 AACAGAGGTT .............................. TTCTCTGAATTCTTCATTCGTCTTCCAAAGATGCACTA 1932951 30 100.0 37 AGATGCACTA .............................. TCGTCTATTACCACAACAGTACCATAAATGTCATTAT 1933018 30 100.0 36 ATGTCATTAT .............................. CAAAATCCAATGCGCCTCTCCGTATGGCATCCAACA 1933084 30 100.0 37 GCATCCAACA .............................. CCATCAAACGTGTAAATGCCTAGCCATATTCTGAGCA 1933151 30 100.0 36 ATTCTGAGCA .............................. TATCCCCCTTATTACCCTTACTCACTTCCTGAAGAA 1933217 30 100.0 TCCTGAAGAA .............................. CCCATAGAAC ========== ====== ====== ====== ========== ============================== 49 30 36 GTTTCAATTCCTCATAGGTACGATACAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [242,741] Score: 0.18/0.18 # # Final direction: R [0,5.73 Confidence: HIGH] >NC_017315 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 7619 20 100.0 34 NNNNNNNNNN .................... AACAAAGTACTGGTATTATTGGATTCTTCTGGAC 7673 20 100.0 34 NNNNNNNNNN .................... AAAGAAATGCCGATTTTATCATGTTTATCCGAAG 7727 20 100.0 1 NNNNNNNNNN .................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================== 3 20 34 GTTGGTTTTTCCCACTTTCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [590,689] Score: 0/0.18 # # Final direction: F [0.27,0 Confidence: MEDIUM] >NC_017311 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 170455 32 100.0 33 ATGGCCGACA ................................ CAGTCTCGTTACCCTGTCGCGGAGGGCGTCGAT 170520 32 100.0 35 GGGCGTCGAT ................................ GCCATGCTCAGGCTGGCGAGTGCGCCACTCATCAA 170587 32 100.0 36 CACTCATCAA ................................ CTTGTTTGGAGGCACCAAGAATCAATCAGGCATCGC 170655 32 100.0 33 CAGGCATCGC ................................ TTGAGCGCGGCGAGTGCGTGGACATCGTGGCGA 170720 32 100.0 34 ATCGTGGCGA ................................ ATCACACACCTCGCTTGCTCTACGTTCCTGCATC 170786 32 100.0 32 TTCCTGCATC ................................ CAGTTGGAGGAAGACCATCAACAGTTCCATAG 170850 32 100.0 34 AGTTCCATAG ................................ ACGCCGCCGGTCGCGCCGTGCTCAAGTGCATTTG 170916 32 100.0 35 AGTGCATTTG ................................ TGCGATGCACTGCACCGCCATGCCAGCCTGCGCCG 170983 32 100.0 35 GCCTGCGCCG ................................ CGCGCCGCAGGGTTTCAAGCCGCCACGCTGGACGG 171050 32 100.0 35 CGCTGGACGG ................................ TCAACGCCCACGCCCTCCGCGATGCACAAGTGGCG 171117 32 100.0 35 ACAAGTGGCG ................................ GCCCCGACCGACATGGTGCAGCGTGCCATCACGGG 171184 32 100.0 33 CCATCACGGG ................................ GGCAGAAGGCGCGTGAGGTCGCAGCCGAACTTG 171249 32 100.0 33 GCCGAACTTG ................................ CGAAGAATTACGCGCAGTACGAAATTGACGAGC 171314 32 100.0 36 ATTGACGAGC ................................ ATGGCGGTTGCTGACGTTGCGATGATGCAGCGGCAC 171382 32 100.0 33 GCAGCGGCAC ................................ AAGTCGCAGGCTTGCGAAGCCTACACGCGCAAG 171447 32 100.0 34 CACGCGCAAG ................................ ACGGTGATGCCAAGAAGTGTCACAAGCTCGTAGT 171513 32 100.0 33 AGCTCGTAGT ................................ AGCCTCAACGCGCACGGGGCAGTGTACTCCGCG 171578 32 100.0 33 GTACTCCGCG ................................ TCCCTGGCGGCGCAGAGCGTACTGTTCAGGGAT 171643 32 100.0 33 GTTCAGGGAT ................................ GATCTCATAGGCGTTATGGAGCGTGGCTCGTGA 171708 32 100.0 34 TGGCTCGTGA ................................ ATCCAGATACCGCAGGATGATGACAACTACCTGT 171774 32 100.0 33 AACTACCTGT ................................ AACATCGGAACGGATGTTGACCGTGTTGGTGGA 171839 32 96.9 34 TGTTGGTGGA ..........G..................... GACCTGCCGGTGGTGACAACGGCAATCCTGTTGC 171905 32 100.0 34 ATCCTGTTGC ................................ TACTATCCCCAAGCCGCCCGTCTCGAATCGGCAG 171971 32 100.0 35 GAATCGGCAG ................................ CTGTGCATCGGTTGTGGCAGGCGTTGCAGCCTGAA 172038 32 100.0 35 GCAGCCTGAA ................................ ACCTGATCGATACGGTTATGCCCGTAACGCTGCGC 172105 32 96.9 33 AACGCTGCGC ..........G..................... GCGGGCGGGGGCGGTGCATCGCTCGGCATCGAG 172170 32 100.0 35 CGGCATCGAG ................................ AGCGAAAGTGCCCACGCATCAGTCACCTTGGCTAT 172237 32 93.8 CCTTGGCTAT ........T.G..................... AGCTCTCCCTCTTTGACGACAGCGCGGCACGCC ========== ====== ====== ====== ========== ================================ 28 32 34 GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.20,-11.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [40.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [180,118] Score: 0/0.18 # # Final direction: F [5.55,0 Confidence: HIGH] >NC_017316 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1738188 36 100.0 30 NNNNNNNNNN ..GA.A..TTGT..T.T.........G......... AAATTTTTTGAACTTAATGCAATTTCTTGA 1738254 36 100.0 30 NNNNNNNNNN .................................... AAAACTTTTGACGGCTCTTTAGTCAACCCA 1738320 36 100.0 30 NNNNNNNNNN .................................... GGAGAAATGTAGCTGCTGTTTTGACATTAG 1738386 36 100.0 30 NNNNNNNNNN ................G................... TTCTATTCTTGCCTTTGCCTTTAAATTAGC 1738452 36 100.0 30 NNNNNNNNNN .................................... TGGTTGGATATTTTTCTAATAACTTACGGC 1738518 36 100.0 30 NNNNNNNNNN .................................... ATGCAGACATTAAGAATTTACCAGAGGAAG 1738584 36 100.0 30 NNNNNNNNNN .................................... CTAGCATTTGTTAGATGGCACTACGATAAG 1738650 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 8 36 30 GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [381,159] Score: 0.18/0.18 # # Final direction: R [0.18,0.41 Confidence: MEDIUM] >NC_017316 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 422486 37 100.0 29 NNNNNNNNNN ..................................... TTGCCACTTGCGAGCTTCACCAGAGCTAT 422552 37 100.0 29 NNNNNNNNNN ..................................... AGGTTTCAAGTGTGAATAGGTACGGTCTT 422618 37 100.0 29 NNNNNNNNNN ..................................... ATAAATTCTACCCCCATGTTATAAAACGG 422684 37 100.0 29 NNNNNNNNNN ..................................... TTAGGTAGTTTTTTAACGCACTTACTTCT 422750 37 100.0 29 NNNNNNNNNN ..................................... GCCGTCGGAACCGTCCCGACTTCCTAACA 422816 37 100.0 29 NNNNNNNNNN ....................................A TTTTGAGACATGGTCGTTTCGTTTTGAAT 422882 37 100.0 29 NNNNNNNNNN ..................................T.. CTAATGAGCATTCATTACATATGTAGAAC 422948 37 100.0 1 NNNNNNNNNN ......................TT.TCGCAA.T.CGA NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 8 37 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [63.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [94,298] Score: 0.18/0.18 # # Final direction: R [0.41,0.45 Confidence: LOW] >NC_017317 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 111684 36 100.0 35 CTACAGCGTC .................................... GCCTCCATGCTCATCAGTGAGAACCCCAACGCCGG 111755 36 100.0 37 CCAACGCCGG .................................... TGCCCTCATAAGCCGAACCGCTAGCGATCTCTTCCAT 111828 36 100.0 38 TCTCTTCCAT .................................... CTAGCGAAGATTCGTGCTGCTGCACGCCGCGCAAATAT 111902 36 100.0 33 GCGCAAATAT .................................... TTGATTAAGCGCGCGATTGGTGCGGACTTCGAC 111971 36 100.0 35 GGACTTCGAC .................................... CCGTATTGTGGATGCTGCGATTGCGAAGCTCAAGG 112042 36 100.0 39 AAGCTCAAGG .................................... TTCCGGGTCCATCCGGTGGGGCCCATGGCACGGTTGAAG 112117 36 100.0 39 ACGGTTGAAG .................................... GCTGGTGTTCCGTCATTGGCGTATATTCTTATGGTAGCC 112192 36 100.0 38 TATGGTAGCC .................................... TGATGGGATTGATGCGCGGTTCCTTGGCCCTATTCGGG 112266 36 100.0 38 CCTATTCGGG .................................... GGGTATCGGTGGATTGGCTTCTGCCATAAATCCTCAAA 112340 36 100.0 39 AATCCTCAAA .................................... TTTTACATGGACGCCATCGCTAAAGGAATAGCCATGGGG 112415 36 100.0 37 AGCCATGGGG .................................... TCCATCAACAATGACGGGGATGATGATTTTGGTGGTC 112488 36 100.0 39 TTTGGTGGTC .................................... TCAGGGTCGTAGGCGAGTTCTGTGTCTTCTGCGGGGAAA 112563 36 100.0 TGCGGGGAAA .................................... AGCCCCCTCA ========== ====== ====== ====== ========== ==================================== 13 36 37 ACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [11,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.10,-8.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [33.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [309,195] Score: 0/0.18 # # Final direction: R [0.37,0.64 Confidence: LOW] >NC_017317 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1954889 29 100.0 32 NNNNNNNNNN ............................. GAAAGGCGAAACCGCCTTCTCCAAGGGTGAGA 1954950 29 100.0 32 NNNNNNNNNN ............................. CGCGTTGAGAAGGTCGGAGACTTTGCTGCGGA 1955011 29 100.0 32 NNNNNNNNNN ............................. TTCCATACAGGTGTTGCAACGGCGTTGGCCTT 1955072 29 100.0 32 NNNNNNNNNN ............................. AATGGCTTAAAGAATGTGAACGGGGTATTACG 1955133 29 100.0 32 NNNNNNNNNN ............................. GGTTTCAGGCGCGTTTGAACTTTGGGCACGGC 1955194 29 100.0 32 NNNNNNNNNN ............................T GGAGTTATTGAGGTGCATCATGAATGGAACTC 1955255 29 100.0 32 NNNNNNNNNN ............................. ACCCTCGCCGACCGAAAAGGATTCGACCGCTG 1955316 29 100.0 32 NNNNNNNNNN ............................. CCCACACTCGCTAAGGACCCCTGTGACCGCAT 1955377 29 100.0 32 NNNNNNNNNN ............................. GCCAAGAGTGCAAGTGGATGCAATGTCAAACA 1955438 29 100.0 32 NNNNNNNNNN ............................. ATGCTTATCACCTTCAAGGTCTGTGAGGCGAT 1955499 29 100.0 33 NNNNNNNNNN ............................. TGTGCACGACACCGTTGCCCGATGTGACTTCCA 1955561 29 100.0 32 NNNNNNNNNN ............................. TCTTAGGGATACGGACGAGCACATCATCTCGG 1955622 29 100.0 32 NNNNNNNNNN ............................. TAAGAGATTTGGTTGCTTACTGTGAATCAAAA 1955683 29 100.0 32 NNNNNNNNNN ............................. GCGAGCTTTTACCTGCTCGAGTATAGCTTCTG 1955744 29 100.0 32 NNNNNNNNNN ............................. CTGGCTGTGATTCCCGAGGGCGGCGCGGTCTT 1955805 29 100.0 32 NNNNNNNNNN ............................. TCGGCCCGCACGGCGGCTATCGCAGCCGCATT 1955866 29 100.0 32 NNNNNNNNNN ............................. GTGTTCTTTCTTTGATGGCTCAGACACAGTTC 1955927 29 100.0 32 NNNNNNNNNN ............................. ATCCACGGCCTTGATCGAAACATCCGCACGAA 1955988 29 100.0 32 NNNNNNNNNN ............................. CCACCAGAACCCCGCGCACTACCCGGCAAAAC 1956049 29 100.0 32 NNNNNNNNNN ............................. CGCATTCGTCACAGCGTCGATGCCACGGAAGT 1956110 29 100.0 32 NNNNNNNNNN ............................. GTGAGGCAAATCACATATTTTTAGATTGTGAA 1956171 29 100.0 32 NNNNNNNNNN ............................. AGGTGCTTGTCGATGTGTCCAAGGAGGTCGGC 1956232 29 100.0 31 NNNNNNNNNN ............................. GATTTTCGTTAATAGCGGCGCTCAGCTAATG 1956292 29 100.0 32 NNNNNNNNNN GC........................... ATCGGCTACGGTGAGGACCCCGAGGGGCGGGA 1956353 29 100.0 33 NNNNNNNNNN ............................A CGTGTTTACATCCCGGCCAATATGGCTTATATT 1956415 29 100.0 32 NNNNNNNNNN ............................. GATGTAAAGCCGCAGATAAGCCAGCGGAAAAG 1956476 29 100.0 33 NNNNNNNNNN ............................. GTGAATGCTTCAAAATTCGGGAGGTGGTTGGGG 1956538 29 100.0 32 NNNNNNNNNN ............................. CGATCTTCCAGGGCTGAATGACATCATTTCCA 1956599 29 100.0 33 NNNNNNNNNN ............................. TTTTGTATCGCCTCCACATGATCAATCAGCGTG 1956661 29 100.0 32 NNNNNNNNNN ............................. GATTACGCATAGCATCAAGATCAAATACTGGC 1956722 29 100.0 32 NNNNNNNNNN ............................. CGAAACATCCGATGCGCTGGCCTTCTCAAAAA 1956783 29 100.0 32 NNNNNNNNNN ............................. CGCTTCACCTGGCTGGCCGGAATGACCCCATC 1956844 29 100.0 32 NNNNNNNNNN ............................. GGCTTGAGCAATTTCGCGTCGGTGGCCATGCC 1956905 29 100.0 32 NNNNNNNNNN ............................. TACGCAGAGGACTCCGGAATGGTGATTGTGGG 1956966 29 100.0 32 NNNNNNNNNN ............................. AACACCGCCACCTGCATGGATTGGGAGTAGAC 1957027 29 100.0 32 NNNNNNNNNN ............................. TTCCCGAATGTTCCACGAACCTACAAGGCTGT 1957088 29 100.0 32 NNNNNNNNNN ............................. CTAAAGATTCATATCTTTCAAAGCTTCCCACG 1957149 29 100.0 32 NNNNNNNNNN ............................. GGCGCGTACGCGCTCTTGCCTAGGTTGGGGTT 1957210 29 100.0 32 NNNNNNNNNN ............................. AAGCAGCATCGATAAGTGGCGGGAATATGCCG 1957271 29 100.0 32 NNNNNNNNNN ............................T ATCCTTTTTCTTAATTTTCACTTTCACGGCTT 1957332 29 100.0 32 NNNNNNNNNN ............................. CTAGGCGGGTATCTTGGCTCGATCGAGCGATC 1957393 29 100.0 32 NNNNNNNNNN ............................. GCCTTTTTCGCCGCGTCATCGGCGAGATAGAG 1957454 29 100.0 32 NNNNNNNNNN ............................. AAATCACCATCAGCGCAAAAACCACCCGCTAT 1957515 29 100.0 32 NNNNNNNNNN ............................. GCTATGGCACCTGGCCTCAATAGCTTTGTGAG 1957576 29 100.0 32 NNNNNNNNNN ............................. CGATCTGTTGGGCGGATCAGAATATTCTGTGA 1957637 29 100.0 31 NNNNNNNNNN ............................. GAATAGGTTCAGGCTTGGTTAGGTTTTCGAT 1957697 29 100.0 32 NNNNNNNNNN ............................. GCGAAAAACGTCTGCATTGCTGCAACGCCTAC 1957758 29 100.0 32 NNNNNNNNNN ............................. TTTAACCACGCTTTTTGCCAAAAACCCTGCCT 1957819 29 100.0 32 NNNNNNNNNN ............................. GAGTTGATCTATTACAGCACTATTTTTAAATT 1957880 29 100.0 32 NNNNNNNNNN ............................. GGATTGCCATTGCCTACATTGTGGAATATACT 1957941 29 100.0 32 NNNNNNNNNN ............................. GGTTTTCATCGTCTTTACCTTCCCCCTGCGGT 1958002 29 100.0 32 NNNNNNNNNN ............................. CAAACTCATGCCCGTGATCGTGCCCCGTAAGA 1958063 29 100.0 32 NNNNNNNNNN ............................. TGAGATCGATTATTTGGATTGGCACGCTAAAC 1958124 29 100.0 33 NNNNNNNNNN ............................A CAGCATCGACCATCATGGTCATAACCTGTGATG 1958186 29 100.0 32 NNNNNNNNNN ............................. ATGGAAACCAGCACCGTGGACGCGTCTGATAT 1958247 29 100.0 32 NNNNNNNNNN ............................. GGCTTAGGCGGGAAGTTTCCAGCCTGAATGTT 1958308 29 100.0 32 NNNNNNNNNN ............................. TTTGTGCGTGCTCCACGTAGCGAATCCGTTTA 1958369 29 100.0 32 NNNNNNNNNN ............................. GCGCCAACAAAAATCGGGGCAAGTCTCGCAAC 1958430 29 100.0 32 NNNNNNNNNN ............................. GATTTTCGTTAATAGCGGCGCTCAATTGATGG 1958491 29 100.0 32 NNNNNNNNNN ............................. GCCATCGCTAAAGGAATCCCCATGGGCGTAGT 1958552 29 100.0 32 NNNNNNNNNN ............................. GTGGAGATCGATGCAAGGGCTGAAGCGATGGG 1958613 29 100.0 32 NNNNNNNNNN ............................. CATGTTCCGGTGATTTTTGCGGTGAGTTCCAT 1958674 29 100.0 32 NNNNNNNNNN ............................. TCCCAGTTCGCGTGTTGCGCTGGGGTGAGGAT 1958735 29 100.0 32 NNNNNNNNNN ............................. AATCTTGAGCGCGCTGAGCAGGTCATCGCCTC 1958796 29 100.0 32 NNNNNNNNNN ............................. AACTGGGACGTTATTCCACTTGGAGCACGCCG 1958857 29 100.0 32 NNNNNNNNNN ............................. CCCCTGGGAGGGCGCTAATCCATGTGGGTGGG 1958918 29 100.0 32 NNNNNNNNNN ..........T.................. CGGGGGTTCATCTATCGAGTCCCAGAGGGCCT 1958979 29 100.0 1 NNNNNNNNNN ............................A NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 68 29 32 CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-10.50,-10.30] Score: 0/0.37 # Array degeneracy analysis suggestion: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [309,55] Score: 0.18/0.18 # # Final direction: F [0.59,0.37 Confidence: LOW] >NC_017317 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 27292 29 100.0 32 GACTACGCTT ............................. TTGAGAACCCCCCGCAGTTTAAAGCTTTTCGA 27353 29 100.0 32 AGCTTTTCGA ............................. AATGACTAAGCGGGCGTTAAGTGAACTTGAGG 27414 29 96.6 32 GAACTTGAGG ..............G.............. TGACCGAGCTTGCCTATTTCTCGATCTCACAC 27475 29 96.6 32 GATCTCACAC ..............G.............. CTTCCGGCGCTAACAACAACAAATTCATGACC 27536 29 96.6 32 ATTCATGACC ..............G.............. GGCTAATGCGACGAACTCTCACCCGGCTCATG 27597 29 96.6 32 CCGGCTCATG ..............G.............. CAATGCAGCGAGCGGAGTCCACCGATAACGAT 27658 29 96.6 32 CGATAACGAT ..............G.............. GTGAAGTGCTCGATGGATCTGGACATGGCGTA 27719 29 96.6 32 ACATGGCGTA ..............G.............. AATTGGGTTAGCCATTCGGAAAAGTTCATGCC 27780 29 96.6 32 AGTTCATGCC ..............G.............. CACGAATCTCAAGCTCAGGCCACACCGGTTCC 27841 29 96.6 32 CACCGGTTCC ..............G.............. GCTCTAGAGAGCTCTCTTCGTCGCCTTTATGG 27902 29 96.6 32 GCCTTTATGG ..............G.............. CGCACAAGGAATCAACGGTGCAAACGCTCGTG 27963 29 96.6 32 AACGCTCGTG ..............G.............. GGCTTTTCCTGTTGTGGGATTTCTTCCACGAG 28024 29 96.6 32 CTTCCACGAG ..............G.............. ACCCTATGACACGACACGCACAACACCCACAG 28085 29 96.6 32 ACACCCACAG ..............G.............. TTCGGATGAATGAGCGCACCAAAAACTCTTCG 28146 29 96.6 32 AAACTCTTCG ..............G.............. AGAGTGCGAAATGATCCAGGAGCCTGCGATAA 28207 29 96.6 32 CCTGCGATAA ..............G.............. GCTCCGGGTCAGCTACCAGATTTCCCGCCATC 28268 29 96.6 32 TCCCGCCATC ..............G.............. CCGGCGTTGATAGCCGGGCTTTAACACCCCAC 28329 29 96.6 32 AACACCCCAC ..............G.............. CCTTTTGGTGTTACGTCTGTTCGATAAGACAC 28390 29 96.6 32 GATAAGACAC ..............G.............. CCCCTGTGGTCTCCCACTTTTTCACGACTTCA 28451 29 96.6 32 CACGACTTCA ..............G.............. GTCGGGCTATCGGATCACTAGTAGCGGTATAG 28512 29 96.6 32 AGCGGTATAG ..............G.............. AAGCCGCAGCGCACTACCACACCGGTGGTGTG 28573 29 96.6 32 CGGTGGTGTG ..............G.............. TCGCAAGATTCAACGCTTGTGTCGGCAACCTC 28634 29 96.6 33 CGGCAACCTC ..............G.............. GAACTTTTCGCTTTCATCTCGCACATGATCCGG 28696 29 96.6 32 CATGATCCGG ..............G.............. CTGTCGCCAGCGTGATTCTGAGATCCCTGCGC 28757 29 96.6 32 ATCCCTGCGC ..............G.............. TCGCTTGACCACCGCGTGGGTGTGACCAGCTG 28818 29 96.6 32 TGACCAGCTG ..............G.............. TTGACGCTATAGTCGGGGTGCCACGTGTTTTT 28879 29 96.6 32 ACGTGTTTTT ..............G.............. CCTGCGTTTACCTTGAGTGTGTAGAACTTTCC 28940 29 96.6 32 AGAACTTTCC ..............G.............. ACTAGCAATCTAGGGTATACCCTTTTTAGACA 29001 29 96.6 TTTTTAGACA ..............G.............. GCTAAATAAC ========== ====== ====== ====== ========== ============================= 29 29 32 GGAACTACCTCCGCATACGCGGAGAAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [10,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-10.30,-10.50] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [30,20] Score: 0/0.18 # # Final direction: F [0.37,0 Confidence: MEDIUM] >NC_017331 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 2541496 23 100.0 33 NNNNNNNNNN ....................... CATTATTGTATGCTGACTTTTCGTCACCTTCTG 2541552 23 100.0 36 NNNNNNNNNN .............TTCC.CAA.T TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA 2541611 23 100.0 33 NNNNNNNNNN ....................... CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG 2541667 23 100.0 1 NNNNNNNNNN .....................T. NNNNNNNNNN ========== ====== ====== ====== ========== ======================= 4 23 34 TGTTGGGGCCCCGCCAACTTGCA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.90,-2.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [357,143] Score: 0.18/0.18 # # Final direction: R [0.55,0.78 Confidence: LOW] >NC_017331 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================== ====== 1225387 21 100.0 35 NNNNNNNNNN ..................... CAGAGAGAAATAGGATCACCAATTTCAACAGACAA 1225443 21 100.0 36 NNNNNNNNNN ..........G.T..GG..C. ACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATG 1225500 21 100.0 35 NNNNNNNNNN ..................... CAGAGAGAAATAGGATCACCAATTCCAACAAACAA 1225556 21 100.0 35 NNNNNNNNNN ..................... TATAGAAGCTGGCGAAAAGTCAGCTTACAAAAATG 1225612 21 100.0 35 NNNNNNNNNN ..................... CATAGAGAAATTGGAACCCCAATTTCTACAGACAA 1225668 21 100.0 1 NNNNNNNNNN ..........G.TA.GA.ATC NNNNNNNNNN ========== ====== ====== ====== ========== ===================== 6 21 35 TGCAAGTTGGCGGGGCCCCAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [4,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [5-8] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [365,157] Score: 0.18/0.18 # # Final direction: F [0.96,0.27 Confidence: MEDIUM] >NC_017341 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 2421118 23 100.0 33 NNNNNNNNNN ....................... CATTATTGTATGCTGACTTTTCGTCACCTTCTG 2421174 23 100.0 36 NNNNNNNNNN .............TTCC.CAA.T TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA 2421233 23 100.0 33 NNNNNNNNNN ....................... CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG 2421289 23 100.0 1 NNNNNNNNNN .....................T. NNNNNNNNNN ========== ====== ====== ====== ========== ======================= 4 23 34 TGTTGGGGCCCCGCCAACTTGCA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.90,-2.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [357,143] Score: 0.18/0.18 # # Final direction: R [0.55,0.78 Confidence: LOW] >NC_017347 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 2387184 23 100.0 33 NNNNNNNNNN ....................... CATTATTGTATGCTGACTTTTCGTCACCTTCTG 2387240 23 100.0 36 NNNNNNNNNN .............TTCC.CAA.T TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA 2387299 23 100.0 33 NNNNNNNNNN ....................... CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG 2387355 23 100.0 1 NNNNNNNNNN .....................T. NNNNNNNNNN ========== ====== ====== ====== ========== ======================= 4 23 34 TGTTGGGGCCCCGCCAACTTGCA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.90,-2.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [357,143] Score: 0.18/0.18 # # Final direction: R [0.55,0.78 Confidence: LOW] >NC_017347 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 966456 30 100.0 26 NNNNNNNNNN .............................. CGGGGCCCCAACACAGAGGCTGGCGG 966512 30 100.0 28 NNNNNNNNNN .............................. GGTGGAGCCCCGACACAGAGAAATTAGC 966570 30 100.0 26 NNNNNNNNNN TCCTCA.TT.CTAC.G.CAA.......... CGGGGCCCCAACACAGAAGCTGGCGA 966626 30 100.0 53 NNNNNNNNNN .............................. GGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAA 966709 30 100.0 1 NNNNNNNNNN ....A....AGTAGGATAAT.T...T.... NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 5 30 33 AAAGTCAGCTTACAATAGTGTGCAAGTTGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.50,-1.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [152,71] Score: 0.18/0.18 # # Final direction: F [0.96,0.27 Confidence: MEDIUM] >NC_017353 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 63455 36 100.0 35 NNNNNNNNNN .................................... TAACACCTTTGATTTTATATCTTTTTCCATCAAAT 63526 36 100.0 37 NNNNNNNNNN .................................... CCAAATAATACTATTAATTTATCTGTTAATGCTGTGG 63599 36 100.0 35 NNNNNNNNNN .................................... TGGTAAATCTTCTACACTGTCGACTGGGTCTTCTA 63670 36 100.0 36 NNNNNNNNNN .................................... TGTTCCAATTAGCTAAAGATGTTATGGACGGCAAGA 63742 36 100.0 1 NNNNNNNNNN ..............................A.A..G NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 5 36 35 AATCAGAGAATACCCCGTATAAAAGGGGACGAGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.20,-7.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [188,195] Score: 0/0.18 # # Final direction: F [0.78,0 Confidence: HIGH] >NC_017367 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================== ====== 119035 22 100.0 20 NNNNNNNNNN ...........AA.....G... AATAAGAGTGGGATAGAGTT 119077 22 100.0 41 NNNNNNNNNN ...................... GAACAAGAAAAACAAAAAGCAAATAAGAGTGAGATAGAGTT 119140 22 100.0 41 NNNNNNNNNN ...................... AACAAGAGTGGGATAGAACTCGCTAATAGTCAAATAAAAGC 119203 22 100.0 41 NNNNNNNNNN ...................... GAACAAGAAAAACAAAAAGCAAATAAGAGTGAGATAGAGTT 119266 22 100.0 1 NNNNNNNNNN ......GC...AA.....G... NNNNNNNNNN ========== ====== ====== ====== ========== ====================== 5 22 35 AGAACAAGAAAGGCAAAAAACA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.18%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [497,697] Score: 0/0.18 # # Final direction: F [0.41,0.27 Confidence: LOW] >NC_017367 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================== ====== 987146 21 100.0 39 NNNNNNNNNN C...........C........ ATTCACTAACAGCGCTAACTTAAACTTCAACAACAGCGC 987206 21 100.0 36 NNNNNNNNNN ..................... CTTTAATAGCGCTCAATCTGTTTTTGAAAACAGCAA 987263 21 100.0 36 NNNNNNNNNN ..................... CTTTAATAGCGCTCAATCTGTTTTTGAAAACAGCAA 987320 21 100.0 33 NNNNNNNNNN ..................... TTTTACTGACAACGCCAGCTTCAATAACGATAC 987374 21 100.0 1 NNNNNNNNNN ..................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================== 5 21 36 TTTCAATCAAGGGACTTATAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:71.43%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [55.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [856,6273] Score: 0.18/0.18 # # Final direction: R [0,5.36 Confidence: HIGH] >NC_017367 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================== ====== 987206 26 100.0 31 ACAACAGCGC .......................... ATAGCGCTCAATCTGTTTTTGAAAACAGCAA 987263 26 100.0 31 AAAACAGCAA .......................... ATAGCGCTCAATCTGTTTTTGAAAACAGCAA 987320 26 96.2 28 AAAACAGCAA .....................T.... CTGACAACGCCAGCTTCAATAACGATAC 987374 26 100.0 ATAACGATAC .......................... ATGCAAGCAA ========== ====== ====== ====== ========== ========================== 4 26 30 TTTCAATCAAGGGACTTATAACTTTA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:73.08%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [916,6268] Score: 0.18/0.18 # # Final direction: R [0.41,4.68 Confidence: HIGH] >NC_017390 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 961957 28 100.0 32 TTTACTAACG ............................ TCGGCGCTGCCGCTGCTCAAACTCGCCGTGCT 962017 28 100.0 32 TCGCCGTGCT ............................ ACCATCACTGACAGCGAAGCCCGGAATAAACC 962077 28 96.4 32 GGAATAAACC C........................... AGTCCCGGCACCACCTCAGCGCCCAGCCCTGT 962137 28 100.0 32 CCAGCCCTGT ............................ AGCTAGAGGGGGTAAATAGCGTGGACTACAGC 962197 28 100.0 GGACTACAGC ............................ AAGTCGCGAACAGATTTCGGGGGGTTTTTGCA ========== ====== ====== ====== ========== ============================ 5 28 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [131,122] Score: 0/0.18 # # Final direction: F [1.51,0 Confidence: HIGH] >NC_017375 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================== ====== 970769 26 100.0 34 NNNNNNNNNN C....................A..C. CTAACAGCGCTAACTTAAACTTCAACAACAGCGC 970829 26 100.0 31 NNNNNNNNNN .......................... ATAGCGCTCAATCTGTTTTTGAAAACAGCAA 970886 26 100.0 34 NNNNNNNNNN ............C.......G..... CTGACAATATAGGTTTAAACTTTAATAACGATAC 970946 26 100.0 1 NNNNNNNNNN .......................... NNNNNNNNNN ========== ====== ====== ====== ========== ========================== 4 26 33 TTTCAATCAAGGGACTTATAACTTTA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:73.08%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [859,6262] Score: 0.18/0.18 # # Final direction: R [0,5.09 Confidence: HIGH] >NC_017390 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 930409 29 100.0 32 TAGTTTTAGA ............................. CCTCGCGTCCGTGCGGGGCTTTGCTATCATTA 930470 29 100.0 32 GCTATCATTA ............................. TTTATGACGCTGATTATTATCAGGCTAACCAT 930531 29 100.0 32 GGCTAACCAT ............................. CCGGAAATTTATTTGTGAGTCGGGGAATTTGG 930592 29 100.0 32 GGGAATTTGG ............................. CGGGTTAAATGACGTCATGGCGACAGCATGAA 930653 29 75.9 40 ACAGCATGAA ......................------- ATAAACCGAGTATCGAATAACGTTACCGTGGCCACCATCC 930722 29 100.0 32 GCCACCATCC ............................. GGGAGAACTTGCTTATTATCTCAAACAAAGCG 930783 29 93.1 32 AAACAAAGCG .............A......T........ CCGTGTTGAAGCCATTGGTGTTACCTCTATTT 930844 29 96.6 32 ACCTCTATTT .............A............... GACGTAACAGTAAATGCGCCGGTTCGCGACAA 930905 29 100.0 32 TTCGCGACAA ............................. AGGTTAGAAACGAACAAGTCGGCATCAACGCC 930966 29 100.0 32 CATCAACGCC ............................. CTTTGATGATAATTTTCTTGCTTCTATTACTA 931027 29 100.0 TCTATTACTA ............................. TCCCGCTTTC ========== ====== ====== ====== ========== ============================= 11 29 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [5,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-13.40,-12.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [276,135] Score: 0.18/0.18 # # Final direction: F [1.73,0 Confidence: HIGH] >NC_017382 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================== ====== 934030 21 100.0 39 NNNNNNNNNN C...........C........ ATTCACTAACAGCGCTAACTTAAACTTCAATAACAGTGC 934090 21 100.0 36 NNNNNNNNNN ..................... CTTTAATAGCGCTCAATCCACTTTTAATAACAGCAA 934147 21 100.0 33 NNNNNNNNNN ..................TC. TTTTACTGACAACGCCAGCTTCAATAACGATAC 934201 21 100.0 1 NNNNNNNNNN ..................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================== 4 21 36 TTTCAATCAAGGGACTTACAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [53.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [856,6273] Score: 0.18/0.18 # # Final direction: R [0,5.36 Confidence: HIGH] >NC_017384 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1461978 32 100.0 34 ACCCACCGGA ................................ CCCGATCCAACCGCGAAGTGGGCCAGCCGCGATG 1462044 32 100.0 35 AGCCGCGATG ................................ ACTGTCACTCCGACTTGGAGAGCATCTACAATGAC 1462111 32 96.9 33 CTACAATGAC ..............................C. AGTTGGCGTGCGGGCGTCCACATCTGAATGATG 1462176 32 100.0 34 CTGAATGATG ................................ TCATTGTAGATGGTGGTATCGAAACGCGACACCT 1462242 32 100.0 34 CGCGACACCT ................................ TCCCATAAAAAAACCCGCCTCTAAGGGCGGGCTG 1462308 32 100.0 33 GGGCGGGCTG ................................ TGCTTCCGGTAAAACTCCACCGCAGCGTGGAAC 1462373 32 100.0 41 AGCGTGGAAC ................................ GATGCCGTCCTCGCGTCCCTCCAATCCAGCGCGCGGTCGCT 1462446 32 78.1 36 CGCGGTCGCT -------......................... AGCGACCAATGGCGCGTAGCGACACCCTATCAGGAC 1462514 32 100.0 35 CTATCAGGAC ................................ TACGCTATGACCCAGATCCTCCGGGGGCGCGCAAC 1462581 32 100.0 34 GGCGCGCAAC ................................ CCCAGCAGGCGCGGCGCAGACGACAGGCGGGACG 1462647 32 93.8 AGGCGGGACG .....................G.........G ATCTGCTTA ========== ====== ====== ====== ========== ================================ 11 32 34 GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [7,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [178,121] Score: 0/0.18 # # Final direction: F [1.15,0 Confidence: HIGH] >NC_017390 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 951515 28 100.0 32 TAGAGTAACG ............................ ATCACCGCTTCCCCCCTACCTTTGCAGTCTCG 951575 28 100.0 32 TGCAGTCTCG ............................ TGCCGGACAGCGTGATGATTTTCAATAAACCA 951635 28 100.0 32 CAATAAACCA ............................ GTTCCAGGCTTGCCGCACATCACCAGCCCACC 951695 28 100.0 32 CCAGCCCACC ............................ ATTGACGAAATTTTGACAACGCTGAAACTGCC 951755 28 100.0 32 TGAAACTGCC ............................ CCCGTTGTGGCTCAAAGCCGGAGATCAGCACC 951815 28 100.0 32 GATCAGCACC ............................ TCTACGGCGAGTAGAAAATAACTATCAAGCAG 951875 28 100.0 32 TATCAAGCAG ............................ GGAAACGAACAGCGTTTTCCACTGCATTAATG 951935 28 100.0 32 TGCATTAATG ............................ CATTCGTCTTGCCATCTCTTCGACCGGCAGCA 951995 28 96.4 32 ACCGGCAGCA ...........T................ CGGGATAGCGCCGGGAAAATCAGTTGCAACGC 952055 28 92.9 GTTGCAACGC ...........T.........C...... CTGAAACCGTC ========== ====== ====== ====== ========== ============================ 10 28 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [58.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [187,55] Score: 0.18/0.18 # # Final direction: F [2.1,0 Confidence: HIGH] >NC_017390 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 941242 29 100.0 32 NNNNNNNNNN ............................. CCTTCCAGCCCTCTGAGTGAGGGCTTTCCGTA 941303 29 100.0 32 NNNNNNNNNN ............................. GCTTAATGCCTTTGCCGATGCATTTTCCTTTT 941364 29 100.0 32 NNNNNNNNNN ............................. ACAGTCAACCAGTACCACTCCATTTTTTTCGT 941425 29 100.0 32 NNNNNNNNNN ............................. AAAGTTTGGCAGATGCGCTACAAGATTGAAGG 941486 29 100.0 32 NNNNNNNNNN ............................. GAAAAAATATCCGACCTCCGCGAAAAGCAGGA 941547 29 100.0 33 NNNNNNNNNN ............................. CCTGGTTGTAGGAGTGGGGCCGACCCGTACCGG 941609 29 100.0 32 NNNNNNNNNN ............................. GCCACTAGAATCAGCAGCCCGCATCAATTGCC 941670 29 100.0 32 NNNNNNNNNN ............................. ACGGATGTTGATATTGGGGACGTAATAGGTTG 941731 29 100.0 32 NNNNNNNNNN ............................. GTCAGGTAAAAGGACACTCGGTGGAAATAATT 941792 29 100.0 32 NNNNNNNNNN ............................. CATGGCCACCCGGCCAACCACGATCCAGTTAT 941853 29 100.0 32 NNNNNNNNNN ............................. CTGCAATAGCAGTACTCGTGCCTTTTTCTTAT 941914 29 100.0 32 NNNNNNNNNN ............................A TATGAATGAATATCTACGCAGTAAATGGGAAT 941975 29 100.0 32 NNNNNNNNNN ............................. GTGATCTGCGCTGCTTCTGCCACTGTGCATTC 942036 29 100.0 32 NNNNNNNNNN ............................. TTGTCGCAATCGCTGCTGGTGAGTGGTTCGTG 942097 29 100.0 32 NNNNNNNNNN ............................. TGCGGGTTGGCCAGATTGGGCGCACGGCTCAT 942158 29 100.0 1 NNNNNNNNNN .........CGCATATGC...GAT..A.C NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 16 29 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [92,30] Score: 0.18/0.18 # # Final direction: F [0.86,0.37 Confidence: MEDIUM] >NC_017393 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 22568 20 100.0 34 NNNNNNNNNN ...T.GAT.........G.. GAGCTTGCAAAAAGACATATCTAATTTAGATACC 22622 20 100.0 34 NNNNNNNNNN ........C........G.. GAATTTACAAAAAGATATATCTAATTTAGATACC 22676 20 100.0 46 NNNNNNNNNN .................... GAATTTAAATATTAAAATAGATAATGTAGAAAAGAATTTAAATATT 22742 20 100.0 34 NNNNNNNNNN .................... GAATTTGCGAAAAGATATATCTAATTTAGATACC 22796 20 100.0 1 NNNNNNNNNN .................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================== 5 20 37 AAAATAGATAATGTAGAAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:85.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [80.0-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [149,1998] Score: 0.18/0.18 # # Final direction: R [0,0.59 Confidence: HIGH] >NC_017445 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 308954 29 100.0 32 NNNNNNNNNN .CAC.ACA..................... GGGCAGCGGCAGGCACTGCGCCGGAACGTATA 309015 29 100.0 32 NNNNNNNNNN ............................. GCGATGTATTCCTGCAGTGTCATTCGTTGTCT 309076 29 100.0 32 NNNNNNNNNN ............................. TAAATTCGGCAAAATCAGGGCGCACGCAGTCT 309137 29 100.0 32 NNNNNNNNNN ............................. CCCAGCAATAGCGAACTGTTGCATAGGCATTC 309198 29 100.0 32 NNNNNNNNNN ............................. GGCACTGACTGCTACGACCCTTTTTCCAGTGA 309259 29 100.0 32 NNNNNNNNNN ............................. GGGGGAAATCAACAGCCTCTCCAACAGGGTAG 309320 29 100.0 33 NNNNNNNNNN .........................TA.A CCGTAGTACGCTAAGGGGTTGATTAAATGGCGA 309382 29 100.0 32 NNNNNNNNNN ............................. GCGTGTCGTTCCCTCCCAATACATCCGCGCTT 309443 29 100.0 32 NNNNNNNNNN A............................ CTTGATGTCGCGTTTGCGTTTAGCATTGAGCG 309504 29 100.0 32 NNNNNNNNNN ............................. CTTGATGTCGCGTTTGCGTTTAGCATTGAGCG 309565 29 100.0 32 NNNNNNNNNN ............................. ATGTGGGTCAACCGTGGCGGCAAACTGACCAT 309626 29 100.0 33 NNNNNNNNNN ............................. ATTTTAGATGATGACGAAAGCCCTGCTGCCGCA 309688 29 100.0 32 NNNNNNNNNN ............................. CCAGATTCCCCGACTCACAAATAAATTTCCGG 309749 29 100.0 32 NNNNNNNNNN ............................. GTGTAAGCCAGAACAATGAAGCGCTGGTCACC 309810 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 15 29 32 CGGTTTATCCCCGCATACGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [55.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [2,92] Score: 0.18/0.18 # # Final direction: R [0.37,0.86 Confidence: MEDIUM] >NC_017445 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 319944 29 100.0 32 AATGTATCAG ............................. TATGACGGTACATGAAGTTTATGAAAAAGGGG 320005 29 100.0 32 GAAAAAGGGG ............................. ATCTTGATGTTCGTGTTCAATCTCGTGTGGCG 320066 29 96.6 32 TCGTGTGGCG ................G............ GAACCTGTTTCACCGACAATCAGGCCGATGCC 320127 29 100.0 32 GGCCGATGCC ............................. ACTACAACACACCCCAGTTCTTTCGCGAGATT 320188 29 100.0 32 TCGCGAGATT ............................. TTGAGCCGGAAGTGTTCGACGTGGTGAAAGGG 320249 29 100.0 33 GGTGAAAGGG ............................. CTAGGCATAGAGCCGAAAATCATATTTATCAAT 320311 29 96.6 32 ATTTATCAAT ...............T............. TCATACAGCTTGCTCATTGTTAGACTCCATAG 320372 29 100.0 32 GACTCCATAG ............................. GAAAAAATGCAACATGTCTGAATTTCTGAAAA 320433 29 100.0 32 TTTCTGAAAA ............................. TCCTAAAGATTATTGCAATGACCCGGCAGCAG 320494 29 100.0 32 CCGGCAGCAG ............................. TCTGACACGTTCGATATCAGCAACTGCGATAA 320555 29 100.0 32 ACTGCGATAA ............................. TCACGCTCTGCCTGCTGCGCGTCTGCAATTAA 320616 29 100.0 CTGCAATTAA ............................. TCTAAAACTA ========== ====== ====== ====== ========== ============================= 12 29 32 CGGTTTATCCCCGCTCACGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [5,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [81,276] Score: 0.18/0.18 # # Final direction: R [0,1.23 Confidence: HIGH] >NC_017448 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2342053 37 100.0 37 ATTAAAATAG ..................................... TTTCATATTGTTACCTCCTAGAATTTTTCTATTCCCT 2342127 37 100.0 37 TCTATTCCCT ..................................... TTTGCAATCTTTGCCATGATCTTGGTCTTAGTGTTTT 2342201 37 100.0 36 TTAGTGTTTT ..................................... AGAACACGCATTTCAGTATCGAGCCTTTCCTTGTCA 2342274 37 100.0 TTCCTTGTCA ..................................... CATCACTCATC ========== ====== ====== ====== ========== ===================================== 4 37 36 CCCTGAAAAGCATTACTCTCGCAAGAGAGATTAAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.20,-6.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [2,2] Score: 0/0.18 # # Final direction: F [0.64,0 Confidence: HIGH] >NC_017448 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2348830 37 100.0 37 GAGGGGTACT ..................................... TCATTACGAGCCAGAGCTGTCATCGGGCCGAGGTTCC 2348904 37 100.0 36 CCGAGGTTCC ..................................... TTGAGTCTGATTCCATTTTCATAGAAGAGACTTTCG 2348977 37 100.0 37 GAGACTTTCG ..................................... GCACTTGATTTAAAGTTAACATTCTTTACAAATGCAA 2349051 37 100.0 36 ACAAATGCAA ..................................... TAACTCCTTCAGATCCTTTAAGAAGGAATTCTTTCC 2349124 37 100.0 37 AATTCTTTCC ..................................... TCCCCACATGCGGATCTTCTCATTGAGAAAATCGTCA 2349198 37 100.0 AAAATCGTCA ..................................... CCAGATGTAA ========== ====== ====== ====== ========== ===================================== 6 37 36 CCCTGAAAAGCATTCCTCTCGCAAGAGAGATTAAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.05%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-6.70,-6.80] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [48.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [778,2] Score: 0.18/0.18 # # Final direction: R [0.18,0.27 Confidence: LOW] >NC_017448 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2350542 37 100.0 36 GAGGGGTACT ..................................... TGAGATCAATTTGATGGTTAATCTTATCCATCTCGT 2350615 37 100.0 39 TCCATCTCGT ..................................... CGTATACTCTTCTTGGTGCAAAGAAGAAGGAAAATACGG 2350691 37 100.0 38 GAAAATACGG ..................................... TCAAAGAATTTAGCTATAAGAGGTAACTGATCCCAATA 2350766 37 100.0 38 GATCCCAATA ..................................... CCTCAGCTTGCGAGTCATACTCTACAAGAGAATTCGTA 2350841 37 100.0 AGAATTCGTA ..................................... CTTCAGCTTG ========== ====== ====== ====== ========== ===================================== 5 37 37 CCCTGAAAAGCATTCCTCTCGCAAGAGAGATTAAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.05%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-6.70,-6.80] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [48.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [773,2] Score: 0.18/0.18 # # Final direction: R [0.18,0.27 Confidence: LOW] >NC_017448 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================================ ====== 612214 48 100.0 29 CAACGAATCA ................................................ GCATATCTGAATAAACTAAACAACAAAAA 612291 48 100.0 30 ACAACAAAAA ................................................ TATTTTCAGTGTAGGTCATGATTTACCCCA 612369 48 100.0 30 ATTTACCCCA ................................................ TGTAGTTAATACCATTATCGCTAAAATCAA 612447 48 100.0 29 CTAAAATCAA ................................................ AATAATACTTTGCAATTGTCAATAGAAAA 612524 48 100.0 30 CAATAGAAAA ................................................ AGCATTTGGAATTTCTTTGAGTTGTGTTTC 612602 48 100.0 30 GTTGTGTTTC ................................................ TAATTTGATTCGCAATTGCACCGCTAGACG 612680 48 100.0 30 CCGCTAGACG ................................................ TAGATATTTTTGACAATTTGGATTGTATCT 612758 48 100.0 30 GATTGTATCT ................................................ TTTCTTTTGTGTAGTTCATGGTTTTATCCT 612836 48 100.0 30 GTTTTATCCT ................................................ AGGTCTGCTGGTCTTCCGGGAAGAGCATCT 612914 48 100.0 AAGAGCATCT ................................................ GGAACGCGCACCGTTTGACGCAAAGAAAGGTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAACGATGCTCGGCATCTTGCCGAAAGGCCGAAGGTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAACAAAGTTTCTCCCAATAAACGCTACAAAGAGTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAACGCTGGCCCTCTTGGTGCTATGGCCGCAGGCGTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAACGCAAGTATGGTAATATGTATGACCACGGCGGTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAACAGTATTCGGACTATATCGGGCGGGCTCGTTGTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAACTACAAAGATAGGATGTTGCATATTTATTAAGTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAACTTAATTTCGTCCACACCGTCAAACCTAAACGTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAACAGAAGAGCGAGTTCACGCCGTTGTGGGTTGTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAACGCTACTGTGCAGTCATTACAAGACCGCGTTGTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAACTGGTGTGAGTCTTGGTTCTCGCTTCGCTCGTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAACGCTACTGTGCAGTCATTACAAGACCGCGTTGTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAACTGGTGTGAGTCTTGGTTCTCGCTTCGCTCGTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAACGATTAACGTTACAATCCTCCACCTTTCCTTGTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAACGGGTTGAGTGGTCCAGCTTGTTATCTACTGTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAACGGGTGGAGGCTTTAATGTCCTTAGATGTTCGTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAACGGAAGGCGATACGGATAAGTTGAACGAAAGTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAACAGTATCATGGCAATATTCTTTCGGGGCATTGTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAACGCTCAGCAGCACGAAATTACTAATAGTCCTGTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAACTATCGACTTGCGACAACGAAGCTCTTGATGTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAACAATCTGTAAGCACTATTGGAAATATGGTCTGTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAACTGCTTGACGAAGTTGGCAATGAATGGTACAGTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAACTAAAATCCCGACGTATGTATTCATCGACG ========== ====== ====== ====== ========== ================================================ 10 48 29 GTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.75%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-3.90,-3.90] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [104,2] Score: 0.18/0.18 # # Final direction: F [0.45,0 Confidence: MEDIUM] >NC_017448 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================================ ====== 612991 48 100.0 30 GCAAAGAAAG ................................................ GATGCTCGGCATCTTGCCGAAAGGCCGAAG 613069 48 100.0 29 AAGGCCGAAG ................................................ AAAGTTTCTCCCAATAAACGCTACAAAGA 613146 48 100.0 30 GCTACAAAGA ................................................ GCTGGCCCTCTTGGTGCTATGGCCGCAGGC 613224 48 100.0 30 GGCCGCAGGC ................................................ GCAAGTATGGTAATATGTATGACCACGGCG 613302 48 100.0 30 GACCACGGCG ................................................ AGTATTCGGACTATATCGGGCGGGCTCGTT 613380 48 100.0 30 CGGGCTCGTT ................................................ TACAAAGATAGGATGTTGCATATTTATTAA 613458 48 100.0 30 TATTTATTAA ................................................ TTAATTTCGTCCACACCGTCAAACCTAAAC 613536 48 100.0 29 AAACCTAAAC ................................................ AGAAGAGCGAGTTCACGCCGTTGTGGGTT 613613 48 100.0 30 GTTGTGGGTT ................................................ GCTACTGTGCAGTCATTACAAGACCGCGTT 613691 48 100.0 29 AGACCGCGTT ................................................ TGGTGTGAGTCTTGGTTCTCGCTTCGCTC 613768 48 100.0 30 CGCTTCGCTC ................................................ GCTACTGTGCAGTCATTACAAGACCGCGTT 613846 48 100.0 29 AGACCGCGTT ................................................ TGGTGTGAGTCTTGGTTCTCGCTTCGCTC 613923 48 100.0 30 CGCTTCGCTC ................................................ GATTAACGTTACAATCCTCCACCTTTCCTT 614001 48 100.0 29 ACCTTTCCTT ................................................ GGGTTGAGTGGTCCAGCTTGTTATCTACT 614078 48 100.0 30 GTTATCTACT ................................................ GGGTGGAGGCTTTAATGTCCTTAGATGTTC 614156 48 100.0 29 TTAGATGTTC ................................................ GGAAGGCGATACGGATAAGTTGAACGAAA 614233 48 100.0 30 TTGAACGAAA ................................................ AGTATCATGGCAATATTCTTTCGGGGCATT 614311 48 100.0 30 TCGGGGCATT ................................................ GCTCAGCAGCACGAAATTACTAATAGTCCT 614389 48 100.0 29 TAATAGTCCT ................................................ TATCGACTTGCGACAACGAAGCTCTTGAT 614466 48 100.0 30 AGCTCTTGAT ................................................ AATCTGTAAGCACTATTGGAAATATGGTCT 614544 48 100.0 30 AATATGGTCT ................................................ TGCTTGACGAAGTTGGCAATGAATGGTACA 614622 48 100.0 GAATGGTACA ................................................ TAAAATCCCGACGTATGTATTCATCGACG ========== ====== ====== ====== ========== ================================================ 22 48 29 GTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.75%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-3.90,-3.90] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [58.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [2,2] Score: 0/0.18 # # Final direction: R [0,0.27 Confidence: MEDIUM] >NC_017449 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1125862 37 100.0 31 NNNNNNNNNN .....G........G.........G...AATAAAA.C TTACCTGTTTGATGCTAGGTATTAGTGTTAT 1125930 37 100.0 35 NNNNNNNNNN T.A.A................................ GGTATGACAATGACTATAACCAACACTCGTCCAGA 1126002 37 100.0 37 NNNNNNNNNN ..................................... TTTTCTTAATCTTAGGGTATCTAAATACAAATTCTCT 1126076 37 100.0 35 NNNNNNNNNN ..................................... AATAAGCATTTCAAGATATTTTATTTAATTTTTAT 1126148 37 100.0 35 NNNNNNNNNN ..................................... TCTAATGTAGAAGCTATATTATCTATTTCACAATT 1126220 37 100.0 34 NNNNNNNNNN ..................................... CTGGTGGAGGCGGTCAAACTGGCGGCGAGGGTGA 1126291 37 100.0 34 NNNNNNNNNN ..................................... AGTGCTTGAAACTTCAAGCCTGTTGTTGAAACGG 1126362 37 100.0 35 NNNNNNNNNN ..................................... ATAATATGCTTAACAATATGTTTTCTAGCGATATT 1126434 37 100.0 34 NNNNNNNNNN ..................................... TTAAGCCAGATAATGAATATCAAGAGTATGTCGA 1126505 37 100.0 36 NNNNNNNNNN ..................................... CAATTATGGAACGATTATGGGGATTGGTTAGATGAA 1126578 37 100.0 36 NNNNNNNNNN ..................................... CTATATTGGGTTATAAAGTTCAACTTCGAGGCGTTA 1126651 37 100.0 36 NNNNNNNNNN ..................................... TGCTATGAGCATTGCAGGCAAAACAAATAAAAAAAA 1126724 37 100.0 34 NNNNNNNNNN ..................................... CTGCTGCCGATACGGGTACAATTCAGGTTATATG 1126795 37 100.0 34 NNNNNNNNNN ..................................... TGCCATACGATACAGCATATATTTCTTTTTTAAT 1126866 37 100.0 34 NNNNNNNNNN ..................................... ACCAAAGCAACATTGCAATTGCAGATAGTGCTGG 1126937 37 100.0 34 NNNNNNNNNN ..................................... TTGTAGGCTGTAAAGGCTCAAAGGCTGTTATTAC 1127008 37 100.0 34 NNNNNNNNNN ..................................... CCTCAACTTTAGCCTTAGGCTCAGTCTTTTTGGC 1127079 37 100.0 36 NNNNNNNNNN ..................................... TGTTACTGGTTTTGCTGAAGGTGGTTATACTGGCAA 1127152 37 100.0 1 NNNNNNNNNN ..................................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 19 37 34 GTTTCAGTAGCTAGATTATTTGATATACTGCTGTTAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.70,-0.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [80.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [732,455] Score: 0/0.18 # # Final direction: F [0.64,0.41 Confidence: LOW] >NC_017449 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================== ====== 1125935 34 94.1 38 GTTATTTATA --................................ GGTATGACAATGACTATAACCAACACTCGTCCAGAGTT 1126007 34 100.0 40 GTCCAGAGTT .................................. TTTTCTTAATCTTAGGGTATCTAAATACAAATTCTCTGTT 1126081 34 100.0 38 ATTCTCTGTT .................................. AATAAGCATTTCAAGATATTTTATTTAATTTTTATGTT 1126153 34 100.0 38 TTTTTATGTT .................................. TCTAATGTAGAAGCTATATTATCTATTTCACAATTGTT 1126225 34 100.0 37 CACAATTGTT .................................. CTGGTGGAGGCGGTCAAACTGGCGGCGAGGGTGAGTT 1126296 34 100.0 37 AGGGTGAGTT .................................. AGTGCTTGAAACTTCAAGCCTGTTGTTGAAACGGGTT 1126367 34 100.0 38 GAAACGGGTT .................................. ATAATATGCTTAACAATATGTTTTCTAGCGATATTGTT 1126439 34 100.0 37 CGATATTGTT .................................. TTAAGCCAGATAATGAATATCAAGAGTATGTCGAGTT 1126510 34 100.0 39 ATGTCGAGTT .................................. CAATTATGGAACGATTATGGGGATTGGTTAGATGAAGTT 1126583 34 100.0 39 AGATGAAGTT .................................. CTATATTGGGTTATAAAGTTCAACTTCGAGGCGTTAGTT 1126656 34 100.0 39 GGCGTTAGTT .................................. TGCTATGAGCATTGCAGGCAAAACAAATAAAAAAAAGTT 1126729 34 100.0 37 AAAAAAAGTT .................................. CTGCTGCCGATACGGGTACAATTCAGGTTATATGGTT 1126800 34 100.0 37 TTATATGGTT .................................. TGCCATACGATACAGCATATATTTCTTTTTTAATGTT 1126871 34 100.0 37 TTTTAATGTT .................................. ACCAAAGCAACATTGCAATTGCAGATAGTGCTGGGTT 1126942 34 100.0 37 GTGCTGGGTT .................................. TTGTAGGCTGTAAAGGCTCAAAGGCTGTTATTACGTT 1127013 34 100.0 37 TTATTACGTT .................................. CCTCAACTTTAGCCTTAGGCTCAGTCTTTTTGGCGTT 1127084 34 100.0 39 TTTTGGCGTT .................................. TGTTACTGGTTTTGCTGAAGGTGGTTATACTGGCAAGTT 1127157 34 100.0 CTGGCAAGTT .................................. AGCCAAGACA ========== ====== ====== ====== ========== ================================== 18 34 37 TCAGTAGCTAGATTATTTGATATACTGCTGTTAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.65%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [805,453] Score: 0/0.18 # # Final direction: F [0.64,0.41 Confidence: LOW] >NC_017450 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1468174 36 100.0 29 NNNNNNNNNN .ATA.T.TA.AG.C...................... GTAAACACTCCAGTTAAGTAATAATCCAT 1468239 36 100.0 29 NNNNNNNNNN .................................... AAATGTTTGAAAAAACGACAGAAGTGTTT 1468304 36 100.0 29 NNNNNNNNNN .................................... AGTAGCTATTTGACCGAACGTACCCTTAT 1468369 36 100.0 28 NNNNNNNNNN .................................... CTACTTACTGGTTATTACGCTACGTTAG 1468433 36 100.0 28 NNNNNNNNNN .................................... TTGGAAGAATATGCCAGTCCATATGTTA 1468497 36 100.0 28 NNNNNNNNNN .................................... TTTGGAGTGGTTATTATGAAGAGATGGC 1468561 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 7 36 28 ATCTACAACAGTAGAAATTATTTAAAGTTCTTAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [78.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [61,141] Score: 0.18/0.18 # # Final direction: R [0.27,0.59 Confidence: MEDIUM] >NC_017450 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 787360 37 100.0 35 TGTTTTGGCT ..................................... TCTGGATGTAGTAACCAAGTCTTACGCTCGATAAC 787432 37 64.9 36 GCTCGATAAC ------------..A...................... GTTGGATCTGTCTCTCTCATTAATACAAGATTGTAT 787505 37 100.0 34 AAGATTGTAT ..................................... AATAAAGAAAATGTAGACTTATTCCAAAACGTTA 787576 37 100.0 34 CAAAACGTTA ..................................... AGCTTCTCATATATGTATTTACTGTCGATTTGAT 787647 37 100.0 37 TCGATTTGAT ..................................... TTTTAATAGGTGATTTGTGAATTTTGATGAGTTAAAG 787721 37 100.0 TGAGTTAAAG ..................................... TTAATTAATT ========== ====== ====== ====== ========== ===================================== 6 37 35 CTAACAGTAGTTTACCAAATAATTCAGCAACTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-3.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [66.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [361,696] Score: 0/0.18 # # Final direction: R [0,1.05 Confidence: HIGH] >NC_017454 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1485511 29 100.0 32 NNNNNNNNNN ............................. ATGGCACGGGTGAGGAGTTCCTGCAGCATCTC 1485572 29 100.0 32 NNNNNNNNNN ............................. CTCCAGAAACAGCTCCTGGACGTCCAGAAGGA 1485633 29 100.0 32 NNNNNNNNNN ............................. CCGTCGCCCTCCTTGGCGCGAACGGCGTTCAT 1485694 29 100.0 32 NNNNNNNNNN ............................. TTCAAGGCAGTCATGCGGTGGTCATCGGCCAC 1485755 29 100.0 32 NNNNNNNNNN ............................. GCTTTCTCGGGATGAGATGCTGGTGGCTTTGA 1485816 29 100.0 32 NNNNNNNNNN ............................. CGACTTATCAAAACTGACAGGATTCCCGGTAC 1485877 29 100.0 32 NNNNNNNNNN ............................. CCACTTGGCGGGATTGCCACTTATGACCACCT 1485938 29 100.0 32 NNNNNNNNNN ............................. ACATTGAAGGCCGGGACATCGAACATTATTGA 1485999 29 100.0 32 NNNNNNNNNN ............................. GTGCGTGATTTTGATCGGCTGTCTTTGACAGC 1486060 29 100.0 32 NNNNNNNNNN ............................. AGTTTCATGACTTTTTCCTGCGCTGGGGTTAA 1486121 29 100.0 32 NNNNNNNNNN ............................. TTGATGCACGCGAGGGCGCCAGAGCCTTTGCG 1486182 29 100.0 32 NNNNNNNNNN ............................. TGATAGGCAACGACACGGCCGGTTTTTGGGTC 1486243 29 100.0 32 NNNNNNNNNN ............................. GCTGATGGACGTACTCCAACGTCTTGGGCCCG 1486304 29 100.0 31 NNNNNNNNNN ............................. GAGCGGCCTTGCCTTTGCCGGTGGCGGTGGC 1486364 29 100.0 32 NNNNNNNNNN ............................. GTGGAGTTGACGGTGTAGAGCTTGGCCGAACC 1486425 29 100.0 32 NNNNNNNNNN ............................. TGACGGGAAAATGTCATAATGTGGTTGGCGAT 1486486 29 100.0 32 NNNNNNNNNN ............................. GCCAAATTCGCAAAAAACGCCACCACGTAAGG 1486547 29 100.0 32 NNNNNNNNNN ............................. TGGGCGGACACCCGGGAGGCCGACGGGAACTA 1486608 29 100.0 32 NNNNNNNNNN ............................. GCACGGAGGTTACGGAAATGATCAGACTGTTT 1486669 29 100.0 32 NNNNNNNNNN ............................. GCAATGTCGGCCACGGGGATGGCCTTGCAGCA 1486730 29 100.0 32 NNNNNNNNNN ............................. GCCGAAGAAGAGATCAAGAGGTTTCAACGCAC 1486791 29 100.0 32 NNNNNNNNNN ............................. GCAAATTATCAGGTAACATCTGATCAGGTCAA 1486852 29 100.0 32 NNNNNNNNNN ............................. TCGTGGTTGCGATTTTGAATAGCGGCGTTGCT 1486913 29 100.0 32 NNNNNNNNNN ............................. TTGAGCAGTAGGAGAACCACCAGGAAACCATA 1486974 29 100.0 33 NNNNNNNNNN ............................. CTCCCCGGCGCTCCCCTGGTCAGCGACAAGAGC 1487036 29 100.0 32 NNNNNNNNNN ............................. GTCTGGTCCGAGGCGGCCTCGGCCGCCGGGGT 1487097 29 100.0 32 NNNNNNNNNN ............................. GTGACCTTGCCGTAGGTGCTGCCTGCGGGGTT 1487158 29 100.0 32 NNNNNNNNNN ............................. AAAACCCTCTCCCCTGCCGCCCTAGCGGCCCG 1487219 29 100.0 32 NNNNNNNNNN ............................. CGTTCCGGCGCGCTGCTGGTCCAGGTTGGCCA 1487280 29 100.0 32 NNNNNNNNNN ............................. ACCCTGGCGGACACCGGCGTCAGGTTCAAAAA 1487341 29 100.0 32 NNNNNNNNNN ............................. CTCAAATGCTGGCCCCTCCGGGAGCATGGGGC 1487402 29 100.0 32 NNNNNNNNNN ............................. CTTCAATATCGGTACTCGACCGCTCATTTTTG 1487463 29 100.0 32 NNNNNNNNNN ............................. TCACTCGGCGCCTGGGCCGCTCCCCCTCATCC 1487524 29 100.0 32 NNNNNNNNNN ............................. CCCTCGTGGGCGATGGCGCCGGAGGCGGCCAG 1487585 29 100.0 32 NNNNNNNNNN ............................. CCCGGAGTGATTTTGCGGGGGCCATGATCATA 1487646 29 100.0 32 NNNNNNNNNN ............................. GTAGTCTGCGTTGAGGCAGACATCAAATGGCT 1487707 29 100.0 32 NNNNNNNNNN ............................. CCCAACCAGAAACCCCGCGACGAGCACCTTCG 1487768 29 100.0 32 NNNNNNNNNN ............................. ATGCCGATTTGGCGGGGTAGCGGTCGTTATGA 1487829 29 100.0 32 NNNNNNNNNN ............................. GTGTCGGTGGCAGAACCCTTGACGATGACGTA 1487890 29 100.0 32 NNNNNNNNNN ............................. TGGCCAACCTCGCCACCATTCCCAAGCGCGGC 1487951 29 100.0 32 NNNNNNNNNN ............................. GAGACCGTTGACGCAGCCCTGGCCATGGAGCG 1488012 29 100.0 32 NNNNNNNNNN ............................. GCGGCCCGGGAACGAACCGCAGCTGACAAGGC 1488073 29 100.0 32 NNNNNNNNNN ............................. AAAACGCTCCAGCTCACCGGGGCGCTGAGGGG 1488134 29 100.0 32 NNNNNNNNNN ............................. ACCGAAGTGGTCGAGACGGCTGCGGCGATCGG 1488195 29 100.0 32 NNNNNNNNNN ............................. GACCGAGAAACGCGAGGAATGCAGGCATTTAC 1488256 29 100.0 32 NNNNNNNNNN ............................. CCGCCGCAAAGTTATCATGCGGCGGCAGTCTC 1488317 29 100.0 32 NNNNNNNNNN ............................. TTGTCTTTTTCCTTTGAAGTTTTGGGCATATT 1488378 29 100.0 32 NNNNNNNNNN ............................. TTCGGCGGCATGGCGGGGCGGGGGCGCAAAGT 1488439 29 100.0 32 NNNNNNNNNN ............................. ACGATTCCTCCGGTGCGGTAGATGTGTTGGTA 1488500 29 100.0 32 NNNNNNNNNN ............................. CTCGGCGCTCTGCAACTCAAAGCCGCTGCCTC 1488561 29 100.0 32 NNNNNNNNNN ............................. TAGTAGAACCGAGCCGCTCTCTGGATATCGGT 1488622 29 100.0 38 NNNNNNNNNN ............................. GTCATGGTCTGCTCGTGCCGGCAATGGGGACAGTGACA 1488689 29 100.0 32 NNNNNNNNNN ............................. CGGCGGCTGCCGTGATGAGGCTGATTTCCGGC 1488750 29 100.0 32 NNNNNNNNNN ............................. CTGAGTGCGCCGGGCTTGGTTGGGGTCCTCCA 1488811 29 100.0 32 NNNNNNNNNN ............................. GCACGGCGGCAACGGTTGGAGGCTGCGCGCCA 1488872 29 100.0 32 NNNNNNNNNN ............................. GCGTAGCCATGGGCAAGCGCAGCGACCTGGAA 1488933 29 100.0 32 NNNNNNNNNN ............................. CTCCAGCCGCAGGCGATGCTCGGCCTTGCCCA 1488994 29 100.0 32 NNNNNNNNNN ............................. GTGTTGACCGGGACGCCAGCACGCCAGCCCCC 1489055 29 100.0 32 NNNNNNNNNN ............................. GTCATGGTCTGCTCGTGCCGGCAATGGGGACA 1489116 29 100.0 32 NNNNNNNNNN ............................. GTGCAGTTGAGGGTCCAATGATCAACGCATTC 1489177 29 100.0 32 NNNNNNNNNN ............................. TCAGAAACGGCGGGGTAGCCGCATTCCACCAC 1489238 29 100.0 32 NNNNNNNNNN ............................. GAGACCCACGCCATGGCAAACACCCTTACCGG 1489299 29 100.0 32 NNNNNNNNNN ............................. TTCCGGTAGAAAGTCACGTATTGCCGGTCCTA 1489360 29 100.0 32 NNNNNNNNNN ............................. GCCCGCCATGAAAACCCTGACCCTGACCCTGA 1489421 29 100.0 32 NNNNNNNNNN ............................. TCGGTGGGGCCTTTGGCATCGGTGGGACGCTC 1489482 29 100.0 32 NNNNNNNNNN ............................. ACGATTCCTCCGGTGCGGTAGATGTGTTGGTA 1489543 29 100.0 32 NNNNNNNNNN ............................. CGGCTCACCAAGGGGCATCAGATTCCACGATT 1489604 29 100.0 32 NNNNNNNNNN ............................. CGCATAGCCGTTATGTCACTCTGCAACATTGC 1489665 29 100.0 32 NNNNNNNNNN ............................. CTGCCGCGGGAACTCCACTGCCATCCGCTCCT 1489726 29 100.0 32 NNNNNNNNNN ............................. GCACCCGCGCCGCAATGCCCGTCATGGCCGGA 1489787 29 100.0 32 NNNNNNNNNN ............................. CAAAAAACATAAACACATGGCACAAATGCTTG 1489848 29 100.0 32 NNNNNNNNNN ............................. ATCGCCATGAAGGTTACGTCCACCGGTAGCCA 1489909 29 100.0 32 NNNNNNNNNN ............................. GCTGCGAGGATGTCGTTCTGGATCTCGGTCAG 1489970 29 100.0 32 NNNNNNNNNN ............................. TTAAACTCGCCACGCTTGAAGACGTCGTCAGC 1490031 29 100.0 32 NNNNNNNNNN ............................. ATTACGCCCTGGCTCTCAACCAGGCCCAGAAC 1490092 29 100.0 32 NNNNNNNNNN ............................. GTGGTGTCGGATGATGAAGGGGGGCAGTGATG 1490153 29 100.0 32 NNNNNNNNNN ............................. AGGCGAAGGTCGCCGCCATGTTCGGCAATAGC 1490214 29 100.0 32 NNNNNNNNNN ............................. GGACAAAATCGCCATAGCCTGTCAGGAAATGA 1490275 29 100.0 32 NNNNNNNNNN ............................. GCCTTTGCCAAGCAAATTCAGTACGATCCATC 1490336 29 100.0 56 NNNNNNNNNN ............................. ACGCGCCCCGCTGATGACTCTGTGGAAGCGAGCAGGCGGCGTTCTTCCCCGTTGAG 1490421 29 100.0 32 NNNNNNNNNN ............................. GAGGCTGCCGTGGCACTTACTGAGCGAACCAT 1490482 29 100.0 32 NNNNNNNNNN ............................. CGGCGGAATCCATTGCCGAGGAAACGTTCGGG 1490543 29 100.0 32 NNNNNNNNNN ............................. TTGTAATTGTATTTTATAGCCCGGATATGGAA 1490604 29 100.0 32 NNNNNNNNNN ............................. GTCAGGCGGTCCCGCCAGTCGCGGACGGTCCC 1490665 29 100.0 32 NNNNNNNNNN ............................. GCGATTGTGTCGGGCGACCCGATAGCGGCGAG 1490726 29 100.0 32 NNNNNNNNNN ............................. GCCCACCCCACCCATGATCCCGGTCTGTGTTG 1490787 29 100.0 32 NNNNNNNNNN ............................. GTCAGGTTGCTTTGAGTAGTTATGACGATTCC 1490848 29 100.0 32 NNNNNNNNNN ............................. GAGCAGCAATTTCGGCAGCAGTCAATGCCAAA 1490909 29 100.0 32 NNNNNNNNNN ............................. GGAAAATCGGCGCCAAATCAAAATTGTTTTGA 1490970 29 100.0 32 NNNNNNNNNN ............................. ATGCTCACTCAATTTTTGTTCGGTCGTCTGCC 1491031 29 100.0 32 NNNNNNNNNN ............................. AACATTGGAGGGAAAATCACATGGTAGAGAAT 1491092 29 100.0 32 NNNNNNNNNN ............................. CGTCAATTGAATCAGTCGCGTTTGAAAAGGAC 1491153 29 100.0 32 NNNNNNNNNN ............................. GTAATCAGCGACTACGTGACCAAGGGCGATGC 1491214 29 100.0 32 NNNNNNNNNN ............................. GTATTCCCGCTGCAGTCGGCCAAATAGTGGTC 1491275 29 100.0 32 NNNNNNNNNN ............................. CTCGGCTGGAATGTGCTTTTAATCGCTCACAG 1491336 29 100.0 32 NNNNNNNNNN ............................. TTGCAGTCGGACGCGGGCACGCCGATCAGGCA 1491397 29 100.0 32 NNNNNNNNNN ............................. GAACACGCGAGCGACCTGAATCATTTTTTCAC 1491458 29 100.0 32 NNNNNNNNNN ............................. GCGGATCGGCAGCCACCCCGTGGCCGCCCACT 1491519 29 100.0 32 NNNNNNNNNN ............................. GTTACGTGGCGCTGAATCCGGCCACCTACAGC 1491580 29 100.0 32 NNNNNNNNNN ............................. CGGTATCGCCATTTCCTGCGAAATTGTCGGAG 1491641 29 100.0 32 NNNNNNNNNN ............................. TATCCGCCAGAAGGTTTCGAGGCTGTGGTGCA 1491702 29 100.0 32 NNNNNNNNNN ............................. TTTCTTCTCTTCAGCGTATTTTAACACGTCCC 1491763 29 100.0 32 NNNNNNNNNN ............................. CATGTGCCAGACGCACTGTACAGCGAGTACAT 1491824 29 100.0 33 NNNNNNNNNN ............................A GTGGCTGACATGGCACGTGAGGCGCTTTACGAA 1491886 29 100.0 32 NNNNNNNNNN ............................. GCTGTCGAGAAGGCGATACTTGACCTCTATGC 1491947 29 100.0 32 NNNNNNNNNN ............................. GTGTAAGTGTTACAAACCCATTGTACAGACTA 1492008 29 100.0 32 NNNNNNNNNN ............................. TAGCTATAAAACTGCGTAAACAGGCGCACGAA 1492069 29 100.0 32 NNNNNNNNNN ............................. AGGTGGGAGCGCGTCTCTGGGATGTGGCATGG 1492130 29 100.0 33 NNNNNNNNNN ............................A GAAGGGGCTGACCCTGGACCGGGCACGGGAGGT 1492192 29 100.0 32 NNNNNNNNNN ............................. CTGGTCTATCTCGGTTGGGAGGTGGAACGTAG 1492253 29 100.0 32 NNNNNNNNNN ............................. TGAATGAAGCGCAATACCTTGTCGATATGGAC 1492314 29 100.0 32 NNNNNNNNNN ............................. ATTTACGTAGGCTGGCAGCGCCTTCTCGACAA 1492375 29 100.0 32 NNNNNNNNNN ............................. ATGAACAGCTCGCTGTTTCGCAGGACAGCACT 1492436 29 100.0 32 NNNNNNNNNN ............................. CACAAAAAAAGGGGGCCAATTAGCCCCCATAA 1492497 29 100.0 32 NNNNNNNNNN ............................. TACCTAGACGGCAGCAGCCGGCGGCAGGGAGA 1492558 29 100.0 32 NNNNNNNNNN ............................. GCATAACAGCTTGAGGCTTTGCGGGCATCACC 1492619 29 100.0 32 NNNNNNNNNN ............................. TTACCGTCCCGCATCATGGAGCGCAGCGGCTC 1492680 29 100.0 59 NNNNNNNNNN ............................. GCGGCAAAGGACGGGCTGACGGGTATTGCATAGGATCTGTCTGATAGCTCGGCGGCTGC 1492768 29 100.0 32 NNNNNNNNNN ............................. AACGATTGACTTTCGAAACATGACAGAGCAAT 1492829 29 100.0 32 NNNNNNNNNN ............................. GGTATAGCTCTTCAAATCTTCCGGACGATGAG 1492890 29 100.0 32 NNNNNNNNNN ............................. AAGAAGCGCAATGTGATCCTCTCGGCGATCAT 1492951 29 100.0 32 NNNNNNNNNN ............................. TGGAACCGGCAGCAACTAACCGAGTTTATCAC 1493012 29 100.0 32 NNNNNNNNNN ............................. ATCGTGGCGAACGCTTTGGCGAACGATTGAAT 1493073 29 100.0 32 NNNNNNNNNN ............................. GTGCAGTTGAGGGTCCAATGATCAACGCATTC 1493134 29 100.0 32 NNNNNNNNNN ............................. CTCACTGGCTCGGCACCGCAGCGGCCATTGGC 1493195 29 100.0 32 NNNNNNNNNN ............................. GTGGGCTCCATACTGCGACCGCGCACTAGAAC 1493256 29 100.0 32 NNNNNNNNNN ............................. GCCACCGACGGCATCGACCTGGATGATTTCGA 1493317 29 100.0 32 NNNNNNNNNN ............................. AACCCTGGAGATGGAAACGGCTGCCGCCGGTG 1493378 29 100.0 32 NNNNNNNNNN ............................. CGCCTCTCCGACCACTTCACCCTGCGAGAGAT 1493439 29 100.0 32 NNNNNNNNNN ............................. GTACCGGAGGAGTATGCCGATTTCACCGCTCC 1493500 29 100.0 32 NNNNNNNNNN ............................. GCAATGGTGGACGAGCTCGGTATAGGTAACCA 1493561 29 100.0 32 NNNNNNNNNN ............................. ATCGCCGCCATGTTCGGCAACTCGGCCGAGGA 1493622 29 100.0 32 NNNNNNNNNN ............................. TAGCTTACCCTTACGTGTTGCCTTGATGATTT 1493683 29 100.0 32 NNNNNNNNNN ............................. GTTGATTAGATTGTGCATTGGATTGTTGTGCT 1493744 29 100.0 32 NNNNNNNNNN ............................. GGGGGCGACGATGACGCGTGAAGACCTGCTCG 1493805 29 100.0 32 NNNNNNNNNN ............................. ATATGGCGCCAGATGGGGTCGTCATGCCGGAA 1493866 29 100.0 32 NNNNNNNNNN ............................. CCGATTTCGTTCCGGTAAATGTGTTTTGCTTA 1493927 29 100.0 33 NNNNNNNNNN ............................. CATAAATGGTTTCTGCATTTTCGATTGCTTTCA 1493989 29 100.0 32 NNNNNNNNNN ............................. CGACGGTGCCGCTCTTGGAGACTACGCCGATC 1494050 29 100.0 32 NNNNNNNNNN ............................C TTCGGTCCCTTCCGAAGAGGGGCCTCAACAAC 1494111 29 100.0 32 NNNNNNNNNN ............................. TCAATGAACTGGCCCGCTCCTGAGAGGGTTAT 1494172 29 100.0 32 NNNNNNNNNN ............................. GGTGTGGTCGCCAGGACCGCCGGATTGATCGG 1494233 29 100.0 32 NNNNNNNNNN ............................. GCGTTCGGGGGGAAATAGGATCAATGGAAGGC 1494294 29 100.0 32 NNNNNNNNNN ............................. AAAGGGGAGGGGGAGAGCAGCATGAAATGTGA 1494355 29 100.0 32 NNNNNNNNNN ............................. CTCCGGCTTATCATCAGGAGCACTACCACAGC 1494416 29 100.0 32 NNNNNNNNNN ............................. GCATTCTCAGTCTTGAGGACGGCGCCCACTTC 1494477 29 100.0 32 NNNNNNNNNN ............................. TGGCTATCTGCCCTGTGGGGTGCTGGCCCTAT 1494538 29 100.0 32 NNNNNNNNNN ............................. GCCATCGCGCAATTCTGAAGTTATATCAGAAA 1494599 29 100.0 32 NNNNNNNNNN ............................. ATGCTGTCAACGGCCTGCCGTTGGTAGGGACG 1494660 29 100.0 32 NNNNNNNNNN ............................. TGGTCACTGACCTGTGGTACCTTGATGGTTGG 1494721 29 100.0 32 NNNNNNNNNN ............................. AACAGCGGAAGCGTTTCCCGTGGATGAATGAT 1494782 29 100.0 32 NNNNNNNNNN ............................. CTGGCCGAAGAGCTGCACAAGACGTACGGCGA 1494843 29 100.0 32 NNNNNNNNNN ............................. CGCGCCGGTACCGGAGGTGCCATTGATGTAGA 1494904 29 100.0 23 NNNNNNNNNN ............................. ATCATACCTGGTCCCCTTCGACC 1494956 29 100.0 32 NNNNNNNNNN ............................. GTGCGCTCGCCCTCGGGTTCGGCTTTGGCACG 1495017 29 100.0 32 NNNNNNNNNN ............................. GCACTGGTTATGCTCCAGGATGAGGGGAACAG 1495078 29 100.0 32 NNNNNNNNNN ............................. CTCGGACGCAAGCCTTACTCGGTGGATTCCTT 1495139 29 100.0 32 NNNNNNNNNN ............................. GCCGAACCGATGCTCGTGGTCGAGGAGATCGC 1495200 29 100.0 32 NNNNNNNNNN ............................. CGCCTTCTTCAGGGGGAAGCTCAATATCCCCA 1495261 29 100.0 32 NNNNNNNNNN ............................. ATGGTTACTGGGTCTCATGTGCGTACCTCTCT 1495322 29 100.0 32 NNNNNNNNNN ............................. TTCTATGTAATAGGGGGTGTGGGGTCAGACTC 1495383 29 100.0 32 NNNNNNNNNN ............................. ACTATCACGTCGCCCAGTGCCGGCAGGAGGGT 1495444 29 100.0 32 NNNNNNNNNN ............................. GCGGCTTCATCGGCCGCGTCGCGGGGGAGCCC 1495505 29 100.0 32 NNNNNNNNNN ............................. CAGGATGGCGGCGCCACTTCCTTCATAAATGT 1495566 29 100.0 32 NNNNNNNNNN ............................. ATGCCGACCGATTCGGCCTGGATCCGGACCAG 1495627 29 100.0 32 NNNNNNNNNN ............................. TATCAACATCTTATAACCACGAATACACGTAT 1495688 29 100.0 32 NNNNNNNNNN ............................. TACTGTTTTTAACTCTTACAGTGCTCGTCTCG 1495749 29 100.0 32 NNNNNNNNNN ............................. TTCGGGAACAACATTAGGCTCTAAAGAACCGT 1495810 29 100.0 32 NNNNNNNNNN ............................. GGGGCTATAGCGGGCCTGAAGGCCGCCGGGTT 1495871 29 100.0 32 NNNNNNNNNN ............................. GAGGTAACTGATGGAACAAGCATCGGGCGGTA 1495932 29 100.0 33 NNNNNNNNNN ............................. CACGTACTCTTGGATCGACCGAACTCCACCGTC 1495994 29 100.0 31 NNNNNNNNNN ............................. TGATGATCATCCTGGATTGCTCCAGGGATAC 1496054 29 100.0 32 NNNNNNNNNN ............................. GTCGTACTCGATATCCAGAAAGAGGCCAACGA 1496115 29 100.0 32 NNNNNNNNNN ............................. GTCGCTCCACCCATCACCCCATGACAAGGATG 1496176 29 100.0 32 NNNNNNNNNN ............................. GCGAATGGCTACAGCGGCGGCGTGCGTTGAAC 1496237 29 100.0 32 NNNNNNNNNN ............................. ATGCACTTTGCCAACGATAAGCGTCCCCGCCG 1496298 29 100.0 32 NNNNNNNNNN ............................. GACATCCACCGCCTCCTCCGCGACGGGTTCAG 1496359 29 100.0 32 NNNNNNNNNN ............................. ACAATGTTTTCCCCTCCTTTCTGTGTGTTGCC 1496420 29 100.0 32 NNNNNNNNNN ............................. GCCGCCCAGCTCGGGCAGGCCGAGGAGGCCGT 1496481 29 100.0 32 NNNNNNNNNN ............................. GTCTTCGCGCTATCGATCACGGGTATGGTCGA 1496542 29 100.0 32 NNNNNNNNNN ............................. AAGTTGGCGCTTCCCCGGTGGGTGGTGAGCAC 1496603 29 100.0 32 NNNNNNNNNN ............................. TTGGATCTGTGGGGGTGATGGCGTGACGATAT 1496664 29 100.0 32 NNNNNNNNNN .....T....................... CCGAGATTCCGCCATTTGACCGAACCTCATGA 1496725 29 100.0 32 NNNNNNNNNN ............................. CGCCAGGCATACGTGAATATGGCCCGGACAAA 1496786 29 100.0 32 NNNNNNNNNN ............................. AGACGAGCAATGGCGGGAAGGATTATGTCTCG 1496847 29 100.0 32 NNNNNNNNNN ............................. CCCCATGACCACTGACAGCGCCATCATCGACG 1496908 29 100.0 32 NNNNNNNNNN ............................. GTCGGGTCAGCCACCAAGATCGGCGTAGCCTC 1496969 29 100.0 32 NNNNNNNNNN ............................. CTGGATTTTCCGGGCGTTGACTGCGACGCCTG 1497030 29 100.0 32 NNNNNNNNNN ............................. TCGAGAAGAAGAAGGAAGCGCTCAACCACTTC 1497091 29 100.0 32 NNNNNNNNNN ............................. CCTGGACAACAACAGGGGGCACATTATGAACA 1497152 29 100.0 32 NNNNNNNNNN ............................. GCCGTCCGTGGCTGCACGAATTCGAGACATTC 1497213 29 100.0 52 NNNNNNNNNN ............................. ATATTTCTGTTTTCGCTGATATTACGCACCACGTGTTCATATTACGCACCAC 1497294 29 100.0 32 NNNNNNNNNN ............................. AGCTAGGCGACATCTCGTCTTTTGTCCGTGCC 1497355 29 100.0 32 NNNNNNNNNN ............................. CTGGAGTTGGAGAGCAACGAACGCCTCGCCCA 1497416 29 100.0 32 NNNNNNNNNN ............................. CACTGGGGGTGGATATTTCACGGCCCACCATC 1497477 29 100.0 32 NNNNNNNNNN ............................. GAATCTTCGACTGGTTCAGGGAGTGGTAATGA 1497538 29 100.0 32 NNNNNNNNNN ............................. ATCTGAAGAGGCGAACAGCTTGGACGCTCTCC 1497599 29 100.0 32 NNNNNNNNNN ............................. AACCCATCCGAGTTGTCCAACATCTTCGGCAG 1497660 29 100.0 32 NNNNNNNNNN ............................. ACGCTGGGCTTACCACCGCCACGTCCATCGTT 1497721 29 100.0 32 NNNNNNNNNN ............................. TTGAACGCACTATTTTGCGTTGACTACCGTAA 1497782 29 100.0 32 NNNNNNNNNN ............................. CCCCGTTGGCTCGTTGGACAGGCCCCGAGTAG 1497843 29 100.0 32 NNNNNNNNNN ............................A TACCGGGCATCATCCTCGGATATCTCCTGCCC 1497904 29 100.0 32 NNNNNNNNNN ............................. TGGGCATCAGACAAGTCATGCCGCCCACGCGG 1497965 29 100.0 32 NNNNNNNNNN ............................. TTCCGCGGGGGAGGTGCGGGGAGCCAGGGGTA 1498026 29 100.0 32 NNNNNNNNNN ............................. CCATCTAGCTGATTTAAATAGCAAATCGCACA 1498087 29 100.0 32 NNNNNNNNNN ............................. TATTGCCCAGTTCCCCCACACAATGATGCTGT 1498148 29 100.0 32 NNNNNNNNNN ............................. GTGGTTGCCGGCAATGCAGAGGCAGATGATGC 1498209 29 100.0 32 NNNNNNNNNN ............................. CAAGCACGGCAGTGCCCGCGTCCTTGACATTC 1498270 29 100.0 32 NNNNNNNNNN ............................. AAACCGACCATCATCGGCTTGCAGGGCGGCGG 1498331 29 100.0 32 NNNNNNNNNN ............................. GCGACGTTCCCCCGGCTCTGGGGGAACAGAAC 1498392 29 100.0 32 NNNNNNNNNN ............................. GGCATTTTGCTGGTTTTGGCGGTCGAGAAAGA 1498453 29 100.0 32 NNNNNNNNNN ............................. GTGATACGGAACGCGAGGATCTTCTGTTCGTC 1498514 29 100.0 32 NNNNNNNNNN ............................. ATGCTCTCATTCCCATTCCTGTGCACCTGGGG 1498575 29 100.0 31 NNNNNNNNNN .........................GGA. AGACCGCCCTCCTGGGATAGCTTCTTCTGGG 1498635 29 100.0 32 NNNNNNNNNN ............................. CACTGGCGGGGAGGGTGGGGCTCATCCCTGAG 1498696 29 100.0 32 NNNNNNNNNN ............................. TGCGCCTCACCGATGGCACCCGCGTTGACTGC 1498757 29 100.0 32 NNNNNNNNNN ............................. GACTCCGGACTCACCACCGCCACCTCCATCGT 1498818 29 100.0 32 NNNNNNNNNN ............................. CCTCACCCAGGGCCTCACCGCCATCACCCTCT 1498879 29 100.0 32 NNNNNNNNNN ............................. AGGTTTTCAAACATGGGTCGTTCCTCCTTTCG 1498940 29 100.0 32 NNNNNNNNNN ............................. GTGGCCTGGCGCTCGCGGGCGTTCTTCTCGGC 1499001 29 100.0 32 NNNNNNNNNN ............................. GTGGATGCTCTCCCTCTGCCTTGCCCGCGACC 1499062 29 100.0 32 NNNNNNNNNN ............................. AGTATTTCAGCGATGCGTAGATTTCTCATCGG 1499123 29 100.0 32 NNNNNNNNNN ............................. GGCGACACGCTGCCGGTTGGTGTTGGCAAAGG 1499184 29 100.0 32 NNNNNNNNNN ............................. CTGCGAGTCGATCATCTCGATACTGTGAGCAA 1499245 29 100.0 32 NNNNNNNNNN ............................. ACCTTGATGGTTTTGCCCTTGGCGCCGGCAAA 1499306 29 100.0 32 NNNNNNNNNN ............................C ACGTCGTCATTGATGGGGATTTTCTCGTCATC 1499367 29 100.0 32 NNNNNNNNNN ............................. GTGTGCAAGGTCTCCGCCAACGGCGAGATCGA 1499428 29 100.0 32 NNNNNNNNNN ............................. CTCATCGTCCCCGTGGCTGCCCTGCACAACGT 1499489 29 100.0 32 NNNNNNNNNN ............................. GCGCCAGTCTGCCGGTTTTTCGATGATGAGGG 1499550 29 100.0 32 NNNNNNNNNN ............................. CAGAAACAGTCATGAGATACTGAATAGGAAAG 1499611 29 100.0 32 NNNNNNNNNN ............................. ACGAGGAAGATGTGCTCGGTGGAGAGGCCAGT 1499672 29 100.0 32 NNNNNNNNNN ............................. AACAATTCAACAATCTGGTAGCACTCGCCACG 1499733 29 100.0 32 NNNNNNNNNN ............................. CAATCCAGGTTTATCGTTGCGAACCGACAGAG 1499794 29 100.0 32 NNNNNNNNNN ............................. TTAACGCACGGATCGCCGCAACCATTCGCCGG 1499855 29 100.0 32 NNNNNNNNNN ............................. GATAGAGGGGGCCTAAGCCCCCTCATGGTGAA 1499916 29 100.0 32 NNNNNNNNNN ............................. AGACGGTTATGAACGCTCGTAATCTGCTTCCC 1499977 29 100.0 32 NNNNNNNNNN ............................. ATGTTGACCGATGCCAGCGCATAGGCGAAACA 1500038 29 100.0 32 NNNNNNNNNN ............................. ATGTTGACCGATGCCAGCGCATAGGCGAAACA 1500099 29 100.0 32 NNNNNNNNNN ...............A............. GTCTATGGGAAGAGGGCAGCGAAGACAAGCAC 1500160 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 240 29 32 GTGTTCCCCGCATGCGCGGGGATGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [63.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [76,209] Score: 0.18/0.18 # # Final direction: F [0.68,0.55 Confidence: LOW] >NC_017455 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2221921 37 100.0 36 GGTATATCCT ..................................... CTTGCGTAGCTTTCTGCGGTTTATCATTCTCGCTTT 2221994 37 100.0 34 TTCTCGCTTT ..................................... ACATTAAGATTTTTAGGCAAAATATTATGGTTAA 2222065 37 97.3 36 TTATGGTTAA ..........................G.......... AAGTATAGTTGAGCAAACTTTTAACACTTATATTAG 2222138 37 97.3 34 CTTATATTAG ....................................T ACAACGAACCCTTGCAGGAAGGAGTTATTACTTA 2222209 37 100.0 TTATTACTTA ..................................... CCGTCAAGCT ========== ====== ====== ====== ========== ===================================== 5 37 35 GTTTCAATCCTTGTTCTAATGGACTTAGTATTTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.27%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.30,-3.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [65.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [611,690] Score: 0/0.18 # # Final direction: R [0.41,5.14 Confidence: HIGH] >NC_017459 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1391076 28 100.0 37 ATTGGGCATG ............................ GTACGCGATAGTTTCGTGATGAGGCAGTATTGAGAAT 1391141 28 100.0 38 TATTGAGAAT ............................ GTAAGGGGTAACAATCGACCCAACAGGAGAGCATTTGA 1391207 28 100.0 39 GAGCATTTGA ............................ GTATGCAGGAAAATCAGCCTCCGCGAGAGAGTTATGCTC 1391274 28 100.0 38 AGTTATGCTC ............................ GTGTCCGTGCCGGTGGCAGGATTGTCGTCGCCAGGTGA 1391340 28 100.0 38 CGCCAGGTGA ............................ GTCCCTTCATAGATAACTGTAAGATTTGAGTTGGTTTG 1391406 28 100.0 40 AGTTGGTTTG ............................ GTTGCCCGATAACGCCAGCGACGATTGCGAGCATAAACGC 1391474 28 100.0 36 GCATAAACGC ............................ GTCGTTGAGATGTCGGTCGCCTGTTTTTGTGCGCTG 1391538 28 100.0 38 TTGTGCGCTG ............................ GTAGTCATCGGAAGATGCCTCCCTGCTCGCCAGTCGGC 1391604 28 100.0 37 GCCAGTCGGC ............................ GTCGCGCTCGAGACGATGTTGACGCAATCAGCAACGA 1391669 28 100.0 38 TCAGCAACGA ............................ GTTGAAAGTCGTTGTGTGACCACAATATAACTAATCTG 1391735 28 100.0 37 AACTAATCTG ............................ GTCGTGTTCAGTACGTCTGAATTAATCGGACTATCAA 1391800 28 100.0 38 GGACTATCAA ............................ GTAAGCCATACGACCGGCGTCGAAAACGGTCCCGACGT 1391866 28 100.0 37 GTCCCGACGT ............................ GTCGATATTAACGTTTGAATCAAACGAATAATCAATA 1391931 28 100.0 37 ATAATCAATA ............................ GTATAACCACTTAGTTCATCACGAACATACTCGCCGA 1391996 28 100.0 38 TACTCGCCGA ............................ GTCGGGGTTGTCATTATCAAAAGCGTCTATCATATCGC 1392062 28 100.0 37 ATCATATCGC ............................ GTTAACAGCTTCAGCAGCGGTCCCAGCCACGGACAGG 1392127 28 100.0 39 CACGGACAGG ............................ GTTTTAGGTGGTTGATTGTCGGATAGATCATCAAAGATG 1392194 28 100.0 37 ATCAAAGATG ............................ GTACTGAGGCATTTACTGCAAAGGGTTTCTCGATCGA 1392259 28 100.0 36 TCTCGATCGA ............................ GTTGTTGATGTTGGCCCAACAACTAACGGCAAGAGA 1392323 28 100.0 37 CGGCAAGAGA ............................ GTATCACACGTATGCTGACGCAACCGAAAACGCAAAA 1392388 28 92.9 AAACGCAAAA C..................C........ CTGTCGGTCG ========== ====== ====== ====== ========== ============================ 21 28 37 GTTTCAGATGAACCCTTGTTGGGTTGAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:57.14%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.40,-3.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [480,1603] Score: 0.18/0.18 # # Final direction: F [1.05,0.18 Confidence: HIGH] >NC_017459 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1403321 30 100.0 36 ATTGGGCATG .............................. AAGCTCGAAGGTGCGCGTTGGTGATGCACCGAACTC 1403387 30 100.0 36 CACCGAACTC .............................. GACAAACGTGGTCGCGGTGGGGAGTGCGCCCGCCTC 1403453 30 100.0 34 CGCCCGCCTC .............................. CACCAACACAATCGCCGGAGCTATCCACGGGAGT 1403517 30 100.0 36 CCACGGGAGT .............................. AATAATTAGATACAGCCAATGAATCTTAAAACTAGA 1403583 30 100.0 34 TAAAACTAGA .............................. AGGCAGTCACACCGCCGATGACGGGAGTGCAGAC 1403647 30 100.0 36 GAGTGCAGAC .............................. GACCTGAGATATGATGATGACCCATAAGACAAACAT 1403713 30 100.0 36 AGACAAACAT .............................. AATCTGCAGAACCCGTTTGTCGCATCGAATGCGCTG 1403779 30 100.0 36 GAATGCGCTG .............................. CTCGCGTTCCTTGTCGTAACGCTCTCGACGGTAATC 1403845 30 100.0 36 GACGGTAATC .............................. CTCCAGTAGTCTGTCGTCGTCGCTGACGCTGCGTAG 1403911 30 100.0 36 CGCTGCGTAG .............................. CCGCCCGGTGAAACGCGGTTTTTGATTGAGAAACCA 1403977 30 100.0 37 TGAGAAACCA .............................. CTTACAGACGGGGAGGGCGATCGTCGTGTCGCCAGCG 1404044 30 100.0 38 GTCGCCAGCG .............................. TGCCCGATAACGCCAGCGACGATTGCGAGCATAAACGC 1404112 30 96.7 35 GCATAAACGC ..................T........... ACGCAGTGAGTCCGTCGATGTCGAGATTACGACCG 1404177 30 100.0 37 ATTACGACCG .............................. ACACTCGGCACAAAATGCGGTCAGAAACAGACCGCCG 1404244 30 100.0 36 CAGACCGCCG .............................. GGCTTGTGCTGCGTTCTCGGCTGTTTTGCGTGGTGT 1404310 30 100.0 37 TGCGTGGTGT .............................. CGGCAATTGGAGGATACTAATAGACATGGCATTAACC 1404377 30 100.0 37 GGCATTAACC .............................. TTTCCATCGTCGCAGTTAACCCAGATCTCATTATCCT 1404444 30 100.0 37 TCATTATCCT .............................. ATCCTGCAGTTGCGCTCGCTCTCGCTCGTAATCGCTG 1404511 30 100.0 37 GTAATCGCTG .............................. AAGTTCAGGACTTGTCTCTACAAGCACGTCGTGAAGA 1404578 30 100.0 35 GTCGTGAAGA .............................. ATTTTCGTTTAGGGAGGGATCCTGGTGTCGTAGGA 1404643 30 100.0 TGTCGTAGGA .............................. CGGGATATCC ========== ====== ====== ====== ========== ============================== 21 30 36 GTTTCAGATGAACCCTTGATGGGTTGAAGT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [106,655] Score: 0.18/0.18 # # Final direction: F [0.37,0.18 Confidence: MEDIUM] >NC_017459 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 403466 37 100.0 36 NNNNNNNNNN ..................................... CCTTCTAATTTGGTGCACCGTTGAGACAGTGACATC 403539 37 100.0 35 NNNNNNNNNN ..................................... AAACCGAGTGACTGCCAGGCGTCTCCTGCCTGCCG 403611 37 100.0 37 NNNNNNNNNN ..................................... GGGATTGAAGTAGCTCCCGGAATTCTCCCGCTTTAAT 403685 37 100.0 38 NNNNNNNNNN ..................................... AAGCCGAATCGCTGGGTCAATTGAACATACTACGGTGG 403760 37 100.0 37 NNNNNNNNNN ..................................... GCTATCATCATCGTCACCGCCACCACCGAATGATGGC 403834 37 100.0 36 NNNNNNNNNN ..................................... GCGGCTCCGTCTTCACGACTAAAACAGCAGAAGATC 403907 37 100.0 36 NNNNNNNNNN ..................................... GTTTATCTTCCTCAGGTTCGAGTTCAAACCCAATTT 403980 37 100.0 36 NNNNNNNNNN ..................................... ATTCCTCAGTTTTCGAGATTGGTTGGTGCTAGCCAT 404053 37 100.0 35 NNNNNNNNNN ..................................... AATTCTCTCAGACTGTACTGTCGTTGTGAAGCGTC 404125 37 100.0 34 NNNNNNNNNN ..................................... CACGTTTGGTTGTCGGGCTGGCACGGTCAACCGC 404196 37 100.0 36 NNNNNNNNNN ..................................... CAGTCCCAAGTAGCGCAGCATCGTCCACCCAAGTAG 404269 37 100.0 39 NNNNNNNNNN ..................................... TATTTGTCACGGCATTGCCATCTGTATCAGTATCGGTAT 404345 37 100.0 37 NNNNNNNNNN ..................................... TGATTATCATTCACACACCATGACACATTCTGCTGCT 404419 37 100.0 35 NNNNNNNNNN ..................................... TAACTCTCCAAAGTGTACAAATTGCGGTTCTCATG 404491 37 100.0 37 NNNNNNNNNN ..................................... GCAGCCCCCGTCTTCACGACAATAAATCTGGTATAAA 404565 37 100.0 39 NNNNNNNNNN ..................................... GAAAATGCAAGTACAGGAGTTGGTAAAACAACTTGTGCT 404641 37 100.0 37 NNNNNNNNNN ..................................... AATAGACAACAGTTTAAAGGAATAGACAGTCTTTTAG 404715 37 100.0 36 NNNNNNNNNN ..................................... AATTGGATGTATGAGCAGTCTGTGAAAAATGGGTTC 404788 37 100.0 36 NNNNNNNNNN ..................................... TGCACGGAACTCTCGAATATCGATAAGATTACCTGT 404861 37 100.0 33 NNNNNNNNNN ..................................... ATGACTCCGACAGAGGACCCAGTGAATACTGTT 404931 37 100.0 37 NNNNNNNNNN ..................................... ACATGGGCAACTGGCGTAGGGTTGACTGCCGTAGAGG 405005 37 100.0 33 NNNNNNNNNN ..................................... AACACGGGATGATGTTCGAAAGCTACGCCGAAT 405075 37 100.0 37 NNNNNNNNNN ..................................... CTGATGTTTTGGTCACTGCTCAGAAAAACACGGCAGC 405149 37 100.0 37 NNNNNNNNNN ..................................... CTGATGTTTTGGTCACTGCTCAGAAAAACACGGCAGC 405223 37 100.0 36 NNNNNNNNNN ..................................... TTTCAAAGCCGACGGCGAACAGCACTGCCGGCAAGT 405296 37 100.0 36 NNNNNNNNNN ..................................... CTCTCAGCCTCAACGGCATTCTTTGCAGCCTTAATC 405369 37 100.0 35 NNNNNNNNNN ..................................... TATTTGCATGAGCTAACCCACGTTATCGCTGTTTA 405441 37 100.0 36 NNNNNNNNNN ..................................... TCCCCGTGGTCAAATCCGCTGTCTTAACTGTATTAT 405514 37 100.0 35 NNNNNNNNNN ..................................... AGCACGGCTAACGACGTGGTGGATCTAAGTAAGCC 405586 37 100.0 38 NNNNNNNNNN ..................................... TGGTTGACCGGTGAACTGGGAACACCGGGAACACAGAC 405661 37 100.0 36 NNNNNNNNNN ..................................... ATTGCTATCATTGGCTATGTGCTGCTGCAACGTGTT 405734 37 100.0 36 NNNNNNNNNN ..................................... CGCCGAGGAGGCAGTCGCTGCCGTGCTGTCTGTTCG 405807 37 100.0 35 NNNNNNNNNN ..................................... ACTCCGCGAGGATAGTAATTCAAAATTGGTGAAAA 405879 37 100.0 35 NNNNNNNNNN ..................................... GATGATCAGCCAGTTCAACATGATGATCCAGGTCG 405951 37 100.0 36 NNNNNNNNNN ..................................... GATGAGTCGTGAGCGTAGATCGTCTGTGGTTGATTG 406024 37 100.0 36 NNNNNNNNNN ..................................... GATGAGTCGTGAGCGTAGATCGTCTGTGGTTGATTG 406097 37 100.0 35 NNNNNNNNNN ..................................... ACCACTTTCCTCGTGGATTCTAACACGTTGAGTTC 406169 37 100.0 37 NNNNNNNNNN ..................................... CCGGCGGCTTCGTCCAAGACAATCACGGAGGGTTGGT 406243 37 100.0 35 NNNNNNNNNN ..................................... ACCAATAGGTTAGTTCTCGCCAGTGTTCATCATGT 406315 37 100.0 37 NNNNNNNNNN ..................................... ACCATCTAGATCAAGACAGAAACCGGTCTGCCTCAGT 406389 37 100.0 33 NNNNNNNNNN .......T............................. CCGATCCACCGAAATTCGTGAAGTGACTACCTG 406459 37 100.0 33 NNNNNNNNNN ..................................... GATACGAGTTTTCTAACTTGGTTCGGACGGTCT 406529 37 100.0 35 NNNNNNNNNN ..................................... AGAGTCCCCGAGTCCGTCGAGATCCGGGAGTCCAA 406601 37 100.0 1 NNNNNNNNNN .....................A....CCA..AA.CC. NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 44 37 35 GTTGCAACGAAGAGAAAACCCGCTAAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.05%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.70,-3.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [117,282] Score: 0.18/0.18 # # Final direction: F [5.55,0.18 Confidence: HIGH] >NC_017461 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 37 24 100.0 37 CTTTTTCCCT ........................ TTGGCATATTTACTCCCCTTGCTCAGAATCAAGCATT 98 24 100.0 37 ATCAAGCATT ........................ TTCACAAATTTAGTCACAAATGCGCTAGGAAACAGAA 159 24 100.0 36 GGAAACAGAA ........................ TCAAACCCATGCTTTCTTAGTATTTCTGCTGCTTCT 219 24 100.0 36 TGCTGCTTCT ........................ CTCTTGCTAATGCTCTAGCAGTCGATCATAGTAGGC 279 24 100.0 38 CATAGTAGGC ........................ AATAGCAAAATCCACTTATCGCCTACCCAATCTTTAAA 341 24 100.0 37 AATCTTTAAA ........................ ATTTTAAGCGGGATCGTGGCTCCTGTGCTGTCAACCG 402 24 100.0 37 CTGTCAACCG ........................ TTGCCTTTATCGGTAATGTATATTTTCCGGCTTACAT 463 24 100.0 38 CGGCTTACAT ........................ AACCATCCCCAAACATATTGAATACCGCTAAGTATAGC 525 24 100.0 38 TAAGTATAGC ........................ CTTGAGACCCCTTGCCCAACTCCTGCTGAAACACTTAT 587 24 100.0 37 AAACACTTAT ........................ TATACAGACCATCTCTCACAGCATCAGCTACAGCCAT 648 24 100.0 38 CTACAGCCAT ........................ AGAATTGTAAGTGAAGCAATCGCAACAACAATAACTAA 710 24 100.0 37 CAATAACTAA ........................ AACTCTTCCATGTATTCAACCAAACTTTCCAAATCCT 771 24 100.0 TCCAAATCCT ........................ TTAAAATTAA ========== ====== ====== ====== ========== ======================== 13 24 37 GAATCTCTCAGATAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [26.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [38,33] Score: 0/0.18 # # Final direction: F [4.5,0.27 Confidence: HIGH] >NC_017461 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 13013 24 100.0 38 CCCCAGCCAC ........................ CTAGTAGAATTAAAGTATGTTGATAGGCTGAACAAGAT 13075 24 100.0 37 TGAACAAGAT ........................ AAAGCGGGTTAAGAGTTTTCAAAGAAGACGAGTTCCA 13136 24 100.0 48 ACGAGTTCCA ........................ ACATAACTTTAATTCAGAAACGCTAAAGCTCTTGATTGGAAACAGAGA 13208 24 100.0 36 GAAACAGAGA ........................ AGTGGGCTTACAAGACATTTTTAGTCTAAGAGAGAG 13268 24 100.0 37 TAAGAGAGAG ........................ AAATCAAGCAATTATGTGAAAGCGGCAAGCTGGTCAG 13329 24 100.0 38 AGCTGGTCAG ........................ AAATAGCTGATGCATTAGGGTTCTTCATAACTATCACA 13391 24 100.0 37 AACTATCACA ........................ ATGTCGATATACTTATTTTTTCGCCTTTTGCCTTTTT 13452 24 100.0 37 TTGCCTTTTT ........................ ACGTTAAGCGTGGCAGCACTTGAAGCAATATTCACAT 13513 24 100.0 36 ATATTCACAT ........................ TGTGGGCTGGTAAATACTTCGAAGCCGTGCTGCCGA 13573 24 100.0 36 GTGCTGCCGA ........................ AAGTCAAGCCCTGTCCCAGCTATTTTTGTTGAGGCG 13633 24 100.0 34 TGTTGAGGCG ........................ AACGCTGGCTTTAATGAATTGAATTTCTTCACCT 13691 24 100.0 37 TTCTTCACCT ........................ ATGGTGAAGTTGTTGAAGAACAGCCCGGTTTTATAAT 13752 24 100.0 37 GTTTTATAAT ........................ CGGAAGAAATAGCACAGCAAGTTAAGCTCATACTTGA 13813 24 100.0 36 TCATACTTGA ........................ AACCCAAACCCCAAACCAAGTAAAAGATCCTAGAGC 13873 24 100.0 38 ATCCTAGAGC ........................ GTAGTTCAAATTAGCGTTGATCAAATTATGGTGCCGGA 13935 24 100.0 37 TGGTGCCGGA ........................ CAATGCGTTTGAATTTACTGAAATGCATTTGGTAATA 13996 24 100.0 39 TTTGGTAATA ........................ ACAGCATGGGATCCTTCAGCCTATCCAAGTTGCTCTCAC 14059 24 100.0 38 TTGCTCTCAC ........................ TACAAAATAATGCTAAAGTATTTGAAGCAGTTACAAAG 14121 24 100.0 AGTTACAAAG ........................ TGCACGATTT ========== ====== ====== ====== ========== ======================== 19 24 37 CTTTCAATTCTATCTGAGAGATTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [94,32] Score: 0.18/0.18 # # Final direction: R [0.18,4.77 Confidence: HIGH] >NC_017461 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 55254 24 100.0 36 ATAATATGTA ........................ TTGAACAGTATGGGGGGGATCCTCGCGAGACCAATA 55314 24 100.0 37 GAGACCAATA ........................ CCCGCAGGCAGGCGATAGAAAACATTGTTAATGCGCT 55375 24 100.0 36 TTAATGCGCT ........................ TAACCGGGCTGGTTTGTGCAGTATTCGACGGGATCG 55435 24 100.0 37 GACGGGATCG ........................ GCAATTTGCTAATTGCCACAAGAATAAAACAACTACT 55496 24 100.0 39 AACAACTACT ........................ AGCAGTCGGGCCACGTTAATCCGGGGCTAATTTCCCTTT 55559 24 100.0 37 ATTTCCCTTT ........................ ACTCTCAATGTCAGCGTTACTAACTCGCAGCTAAATG 55620 24 100.0 38 CAGCTAAATG ........................ TTGGTAGGCGCAATTACGTTTATTAGCCAACTGAACGC 55682 24 100.0 39 AACTGAACGC ........................ AGCTAAGCAACCGCAACAACAACAACAAAGCACACTTGC 55745 24 100.0 36 GCACACTTGC ........................ ACTACCTTTGGCAGGAGTTATACGAGAAGAAACTAA 55805 24 100.0 37 AAGAAACTAA ........................ AAAAACAATCGAAGAGGACATAGAAAACTTAAGAGAA 55866 24 100.0 37 CTTAAGAGAA ........................ GGATCCCCAGCGTTGACATATACGAAACGAACTCGTC 55927 24 100.0 36 CGAACTCGTC ........................ CGAAGACAAAAGTAAGCAAGATGAAATAGCGGATTT 55987 24 100.0 38 TAGCGGATTT ........................ AATTTATCGCTGGCCAATACTCTTAAAGATCATGGCTT 56049 24 100.0 38 ATCATGGCTT ........................ AAGCGTTATATTTGAGCTTACTATAGTAGCGTTCACAT 56111 24 100.0 36 GCGTTCACAT ........................ CAGAGGGTAAGATAAACGAGGGGCTGATCGCCCTAT 56171 24 100.0 ATCGCCCTAT ........................ TGCACTATTT ========== ====== ====== ====== ========== ======================== 16 24 37 CTTTCAATTCTATCTAACAGATTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.83%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [65.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [253,390] Score: 0/0.18 # # Final direction: R [0,4.77 Confidence: HIGH] >NC_017461 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 61768 24 100.0 38 AAATAGTGCA ........................ TGAGGATGACTACATTGTAGTGCCTCCACAGAGACAGC 61830 24 100.0 37 CAGAGACAGC ........................ TGTCAACTTCAAGCTGAATTACTTGCTGCTGATCGCT 61891 24 100.0 39 GCTGATCGCT ........................ TTTGTGCCACTTTTTGCGATCGGCGCGATTGTGCTAAAT 61954 24 100.0 36 TGTGCTAAAT ........................ AAATCCGCTATTTCATCTTGCTTACTTTTGTCTTCG 62014 24 100.0 37 TTTGTCTTCG ........................ GACGAGTTCGTTTCGTATATGTCAACGCTGGGGATCC 62075 24 100.0 37 CTGGGGATCC ........................ TTCTCTTAAGTTTTCTATGTCCTCTTCGATTGTTTTT 62136 24 100.0 36 GATTGTTTTT ........................ TTAGTTTCTTCTCGTATAACTCCTGCCAAAGGTAGT 62196 24 100.0 39 CAAAGGTAGT ........................ GCAAGTGTGCTTTGTTGTTGTTGTTGCGGTTGCTTAGCT 62259 24 100.0 38 TTGCTTAGCT ........................ GCGTTCAGTTGGCTAATAAACGTAATTGCGCCTACCAA 62321 24 100.0 36 CGCCTACCAA ........................ CTCCAATGCCTGGGGCACTAGAGTTATTATTATTAT 62381 24 100.0 36 TTATTATTAT ........................ TAATAACGAGGCCTTCGTTCTCGAGCTGTTTCAAAT 62441 24 100.0 38 TGTTTCAAAT ........................ ACTCCTAGCCCAATATCAATTAATGCAAGTTCTGTAGA 62503 24 100.0 39 GTTCTGTAGA ........................ TATAACATGCATCTTATCACCTAAGCTATCATCTTCCTG 62566 24 100.0 37 CATCTTCCTG ........................ GCTTTAGATATCTCGTGTTCCTTCAGATAGTATTTAA 62627 24 100.0 37 TAGTATTTAA ........................ CTTGTTATTTTTCCTTGGCTAACGAGACTGTCTAAGT 62688 24 100.0 38 CTGTCTAAGT ........................ TTAGACACGGCGAGACGCAGATAATACCCTGGACCGGA 62750 24 100.0 39 CTGGACCGGA ........................ TATCGTGCATAACGAGTTTAAAGAGTGAGTACCAATCGA 62813 24 95.8 TACCAATCGA .......................A GCGATTCCG ========== ====== ====== ====== ========== ======================== 18 24 37 GAATCTGTTAGATAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.83%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [376,58] Score: 0.18/0.18 # # Final direction: F [5.09,0 Confidence: HIGH] >NC_017464 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1381767 30 100.0 37 GAAATGGTGG .............................. AATGTTGAAATCACCTTTAGTAAGAGAAACCTTCTCT 1381834 30 100.0 39 AACCTTCTCT .............................. AGAAAATCGAGCTTCGTTATTAGCATCAATTATTAGGTA 1381903 30 100.0 38 TTATTAGGTA .............................. TTTGGAGGGATATAAAATACAGGTACTTTCCTAATGGA 1381971 30 100.0 39 TCCTAATGGA .............................. CAGTATAGATTTAAAGAAATAATTATCGTTCTTGAAGAA 1382040 30 100.0 37 TCTTGAAGAA .............................. TGCTGAAGCTAAAGCAAAAGCAGAAATAAGTAATAAA 1382107 30 100.0 36 AAGTAATAAA .............................. CAAGGGAAAGGGATAAGGTTTTTTCAACAAGTTCCA 1382173 30 100.0 36 ACAAGTTCCA .............................. TGAAGATTTATTTTGATTTTATGTCGCTCTGATTTT 1382239 30 100.0 39 CTCTGATTTT .............................. GCAAAATTGACAGTCCTACTATGCCAATAAATGCCATAG 1382308 30 100.0 38 AATGCCATAG .............................. CTGATAATTTGTAATAAATATTTTTGTTTTTTTCATTA 1382376 30 100.0 37 TTTTTCATTA .............................. ATCGACCTAATCGTTTTCTTTGATATTAAGCTTGACT 1382443 30 100.0 37 AAGCTTGACT .............................. AGCACTTTGCTTTTTCTCATATCGATTAATTTAGTCA 1382510 30 100.0 37 AATTTAGTCA .............................. ACAGTAGTTTTCTCAACTGTTCCATCCTCTTTCATGT 1382577 30 100.0 37 TCTTTCATGT .............................. AAAAAATCAGATTTTTTGAGAAAAAGCACTTTGCTTT 1382644 30 100.0 37 ACTTTGCTTT .............................. TTCCTGAAAATTATTTCCAAAATTTCTGATTAGGTCG 1382711 30 100.0 37 GATTAGGTCG .............................. CCTGGCAAATGCATCATAATTGCACCGACGCCCTCAG 1382778 30 100.0 35 ACGCCCTCAG .............................. CCTGGTCAGTTGTAGTCTGATGCGGAATTTTTCCA 1382843 30 100.0 36 AATTTTTCCA .............................. CTTGGAGAAGCATTTTGAGTTGCTTCGTTTAGCATT 1382909 30 100.0 37 GTTTAGCATT .............................. AAGCTTCGGATCGAACACTGCAATTGCGCCAACAGTA 1382976 30 100.0 37 GCCAACAGTA .............................. TGCTTCAGGATTAGCCGATGTCATATCACCGGAGAAC 1383043 30 100.0 36 ACCGGAGAAC .............................. TTTGGATAAAATCAATATCCAAATTTTTTTGACTAT 1383109 30 100.0 35 TTTTGACTAT .............................. CCATATCAAAAGGATATTTATATTAAAAATGCTTA 1383174 30 100.0 39 AAAATGCTTA .............................. GAGAAACTCTTCAAGGGATAAATCGGTTTTTTCAACAAG 1383243 30 100.0 39 TTTCAACAAG .............................. CAGGTCTCCGACTCTTTCACAAATTGCCCCAAGTTGGGG 1383312 30 100.0 34 CAAGTTGGGG .............................. ATCAAAATAATTCGTCTAGTTTGTGTTCTGTTTG 1383376 30 100.0 37 GTTCTGTTTG .............................. TTTCTTTCGGTAGTAGGAACATAAAAGTTCCATTTAT 1383443 30 100.0 37 TTCCATTTAT .............................. TACTACTTTATAAATTTATAATTTATTATTGTCTAAA 1383510 30 100.0 37 ATTGTCTAAA .............................. AAATATCCTAATTATCAAACAATAATTATTCGGATAA 1383577 30 100.0 38 ATTCGGATAA .............................. ACTCTCTCAACTTGCTCACGAAGGATGTTAATTTCCTT 1383645 30 100.0 37 TAATTTCCTT .............................. TACTACTTTATAAATTTATAATTTATTATTGTCTAAA 1383712 30 100.0 37 ATTGTCTAAA .............................. AAATATCCTAATTATCAAACAATAATTATTCGGATAA 1383779 30 100.0 38 ATTCGGATAA .............................. CCTTTCAAGGACTGGTCTTTCTCCACCGCCCGCCTTCC 1383847 30 100.0 37 CCCGCCTTCC .............................. GCAAATCCAATTAATACAGCTTTCAATTGGATCAACC 1383914 30 100.0 38 TGGATCAACC .............................. TATTTTTTCGATCTGTTCACGAAGGAGGTTTATCTCCG 1383982 30 100.0 39 TTTATCTCCG .............................. CTTGCAACCAATCCGATTATATCAGATGGAGCTTCTGAG 1384051 30 100.0 34 AGCTTCTGAG .............................. TCAGCTTGATGCACAGGAAGTTTATGTTCAGCCA 1384115 30 100.0 37 TGTTCAGCCA .............................. GGACTTGGAACTTTTATATCCCTTGCGAGAGTGTTTT 1384182 30 100.0 39 AGAGTGTTTT .............................. CCAAAAACCTCAGCTTGAGATTATTATAATAATAAAATA 1384251 30 100.0 36 TAATAAAATA .............................. GTATTGATTCGGAGGTCTAATTCCTCCCAATCTTCT 1384317 30 100.0 35 CCAATCTTCT .............................. CCAAATATATCTTTATGTTATTAGGATATTTATTG 1384382 30 100.0 38 ATATTTATTG .............................. AAACTTTTATTTTTGGAATAAAACCATCAAGATTTTTA 1384450 30 100.0 37 AAGATTTTTA .............................. CCGATGATTAAAGCCAAGCCATTTGGCTGCTTTTTTA 1384517 30 100.0 35 TGCTTTTTTA .............................. CATATCTTCTCCTTATTAAATTATTAATTAGTTAA 1384582 30 100.0 36 AATTAGTTAA .............................. GCAGCTTCAGGCTCATACTTAATCGCAATTGAATTG 1384648 30 100.0 37 AATTGAATTG .............................. AGAAACGAATCAGCTTTTCCGGGATTTGCGGTAATGT 1384715 30 100.0 39 GCGGTAATGT .............................. AAAGCTTTACCAGTTCCTCGGCATGGCCGATATTTATCG 1384784 30 100.0 36 ATATTTATCG .............................. TAAATTGCCCATCTTTAAGGTAAGACTCATACAACA 1384850 30 100.0 36 TCATACAACA .............................. TTACTTGGCCAGCGTAGAATTCGTCAAGGCGTTTTT 1384916 30 100.0 39 AGGCGTTTTT .............................. TTTGTTTATCACCCCAATTAGTTGAGGGGTGATTTGATA 1384985 30 100.0 36 TGATTTGATA .............................. GCATTCTTTAACTTCCACTCGTTACGAATGATTTTG 1385051 30 100.0 36 AATGATTTTG .............................. CCTCCTTTCAAGGACTGGTTTTTCTCCACCGCCCGC 1385117 30 100.0 37 CACCGCCCGC .............................. GGCGATATTATCAAGGTAACATATATCGGTTCAAACA 1385184 30 100.0 38 GGTTCAAACA .............................. CGGGATCTGCCGGTATTTGCCCAAGTTTTGAAGTTTCC 1385252 30 100.0 39 TGAAGTTTCC .............................. CATTTGAGCTATCTTAATAATGGTCGGGCGATTAGATAC 1385321 30 100.0 37 GATTAGATAC .............................. TGTTTTTTCTCCAAGTATCTTTTCTCAAAGGCCTTAG 1385388 30 100.0 36 AAGGCCTTAG .............................. TTTTTAGTTGTTTTCATGTTTTTCTCCTTTTTATGT 1385454 30 100.0 38 CTTTTTATGT .............................. TTTCGTAATTCTAAGACCCAACAAGGGATTCACCCTTG 1385522 30 100.0 38 TTCACCCTTG .............................. TTGTTCATATAGGTTTTCCTTTGTCTTTTGCGCTTAAA 1385590 30 100.0 39 TGCGCTTAAA .............................. TGTCATTTTCTTTGATGACGTATTGTATTGGTTCATCAA 1385659 30 100.0 37 GGTTCATCAA .............................. AACTGTGGCATAATGAATGCCTGTTTTATATGATTCT 1385726 30 100.0 37 ATATGATTCT .............................. AACCGGCCCAACCACTGGTACCTAATGTCCTTATGGA 1385793 30 100.0 37 TCCTTATGGA .............................. AAGACTTGCTCAGGTCTTATATTTATTCCTCTAGTTC 1385860 30 100.0 38 CCTCTAGTTC .............................. CTGACCAGCCCTTTTGAAATAAATTCATTGATGAATAG 1385928 30 100.0 39 TGATGAATAG .............................. TATCTCATGTTCTTGCAGGTCTCTCACTTCGTTGTCCTG 1385997 30 100.0 37 CGTTGTCCTG .............................. CGCTTTTCTCTCCATTTCCTCAGTAAAAGCAAGCATC 1386064 30 100.0 41 AGCAAGCATC .............................. TTGCCAAATACACCGTCATCTTTCAGTAATCTGACTTTAAG 1386135 30 100.0 40 TGACTTTAAG .............................. TGTCATTACAAATGCTTTAATAATATAGATACCAAGTGTA 1386205 30 100.0 38 ACCAAGTGTA .............................. AAATGTTTAATAATGATACACTATCCATAGGTTCATTA 1386273 30 100.0 38 AGGTTCATTA .............................. GATTAAGTGGACCGCACGGATTAGGTGCGTGTTAATCC 1386341 30 100.0 37 GTGTTAATCC .............................. TACCTTTACTGCTGTTCTTTCCGGAGAATCAATAATA 1386408 30 100.0 36 ATCAATAATA .............................. CAAAGCTTGTTCTTGTTCTGAATATCTCCCTGATTA 1386474 30 100.0 40 TCCCTGATTA .............................. GAAAGCTTGCCACAATATAGATGTTATATGTATCAAGCGG 1386544 30 100.0 38 TATCAAGCGG .............................. TGGTGAAACACATTATTATAATCACCCTCACGGACGTA 1386612 30 100.0 37 CACGGACGTA .............................. TTTGCTGAGGCTATCCTTCAGAATAGCCTCAAACAAA 1386679 30 100.0 37 CTCAAACAAA .............................. CCGTTGGAGCTGGCAGCATTTCTATGAAGGTGCAAAG 1386746 30 100.0 37 AGGTGCAAAG .............................. TTTGCTGAGGCTATCCTTCAGAATAGCCTCAAACAAA 1386813 30 100.0 37 CTCAAACAAA .............................. TGCGCAATAAAACATATCTAACATCCTTTTATCTTCA 1386880 30 100.0 38 TTTATCTTCA .............................. AATTACTATTTTGTATTTGTTCGGCTTCCCGTATAGCC 1386948 30 100.0 38 CCGTATAGCC .............................. ATATTTCGGGAATTGCTTGTTGTAATTGAAATAATTTT 1387016 30 100.0 36 AAATAATTTT .............................. GCAATATGGCCCGCTTCCATTGATTTATGGAGACAT 1387082 30 100.0 35 ATGGAGACAT .............................. TCATTGCACCTCTATTTTATTTTTATGTTAGACCC 1387147 30 100.0 37 TGTTAGACCC .............................. CGTTTGAACATTGGCACCAGGTCTTACAGATACTGGA 1387214 30 100.0 36 AGATACTGGA .............................. CCGGTAATGGTATTCTTATTTTCTGCCGGGATCTGC 1387280 30 100.0 36 CGGGATCTGC .............................. TAAAATTCCATTTGCACTTGAGTCCCACTCTATTAA 1387346 30 100.0 38 ACTCTATTAA .............................. TATAAATCAAAATTCAGAACACAGGATGAAGATATTGT 1387414 30 100.0 38 AAGATATTGT .............................. TTCCATAGAATTGTCTCTATGTTTATTGAGTGTATTTC 1387482 30 100.0 36 AGTGTATTTC .............................. CTCAGCATTTGGAGACTATGGTGGGACTGGCAGTGG 1387548 30 100.0 39 CTGGCAGTGG .............................. ACAATTCCCTTTGCAAAAACTTTTATTTTTGGAATAAAA 1387617 30 100.0 TGGAATAAAA .............................. TAAAATCAAA ========== ====== ====== ====== ========== ============================== 88 30 37 GTTTTAATCGAACCATAGTGGAATTGAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.00,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [76.7-83.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [47,31] Score: 0/0.18 # # Final direction: F [0.37,0 Confidence: MEDIUM] >NC_017464 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================================= ====== 3459966 45 100.0 30 ATCATTGCTA ............................................. TTACAAAATCAGCATAATAATAACAAATCA 3460041 45 100.0 30 TAACAAATCA ............................................. CCCATAGCCTCTCGGGTGTTCTGCCAAAGT 3460116 45 100.0 30 CTGCCAAAGT ............................................. TATATGCAATTATGCTTCTTATTGTGCTTG 3460191 45 100.0 30 ATTGTGCTTG ............................................. CAGGGGTTATTGTAGGATTATTAACACTTG 3460266 45 100.0 TTAACACTTG ............................................. TAATGGTTCA ========== ====== ====== ====== ========== ============================================= 5 45 30 GTTGGTTTAATATCCTCAAAGAACAAGTTGAAAGCAAATCACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.40,-1.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [347,583] Score: 0/0.18 # # Final direction: R [0,0.37 Confidence: MEDIUM] >NC_017465 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 1394610 35 100.0 34 CGACTGAAGC ................................... TACCCTCAATTTGGGCGTTTTGACCTGTCGCATC 1394679 35 100.0 33 CTGTCGCATC ................................... CAAGCCAAGGCTTGACGAACTTCCAAGCAAATA 1394747 35 100.0 CAAGCAAATA ................................... CGCAACATAT ========== ====== ====== ====== ========== =================================== 3 35 33 ATTTCAATCCACGCACCCCCGCGAAGGAGTGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [9,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.70,-6.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [38.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [106,461] Score: 0.18/0.18 # # Final direction: R [0.37,5.32 Confidence: HIGH] >NC_017465 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 817592 28 100.0 33 TCTGTTTACG ............................ TTAAAGGAGAATACTATGATCAACAAAAAAATT 817653 28 100.0 33 CAAAAAAATT ............................ TTTTTGCAGGGTTCGCTAGTGATGGCAAAGGTG 817714 28 100.0 33 GGCAAAGGTG ............................ TATCAGCTTGTGCTGCACTTGCCGATGATTTAG 817775 28 100.0 33 GATGATTTAG ............................ TGATATGATCTACGATCAGGGAACCTATGCTTC 817836 28 100.0 33 CCTATGCTTC ............................ CATCTTGCCTACGATTGACACCTCAACCGGTGA 817897 28 100.0 33 CAACCGGTGA ............................ TAGGGACACAAGATAACCTTGCCGAGATAATGA 817958 28 100.0 33 GAGATAATGA ............................ TCGTGTTTCAAGATCCGTCCCGAGCTTGTTTTG 818019 28 100.0 33 GCTTGTTTTG ............................ TTTAATAGCAATAGTCTACCGTATTAGGAGAAG 818080 28 100.0 33 TTAGGAGAAG ............................ TACACAATAAGCGTTAATACTAAAAATAACGGT 818141 28 100.0 33 AAATAACGGT ............................ TCCCGGTTTCTGTATCTACTCCAACTTCATCGA 818202 28 100.0 33 ACTTCATCGA ............................ TTTGTTATATGAGTAACCGCACTTAGCATTAGC 818263 28 100.0 33 TAGCATTAGC ............................ TTAAATACTTAAACTACAAGGTCGATGAAAAAG 818324 28 100.0 33 GATGAAAAAG ............................ CCAGATAAGATGACGATCATCACGACCAACAAC 818385 28 100.0 33 GACCAACAAC ............................ TAGGTGGCAATAGGCCATCCCCAGGGGTCTCCC 818446 28 100.0 33 GGGGTCTCCC ............................ TTATAGTCGGCCACTGAATGGACTTCCGCATCA 818507 28 100.0 34 TTCCGCATCA ............................ TATTGGGAGAAGCTGTTTGGCCCACTTGATCCAA 818569 28 100.0 33 CTTGATCCAA ............................ TTTCCAGTCGTGGAATCGATGCTGACCGTCGGT 818630 28 100.0 33 GACCGTCGGT ............................ CCAACAAAGCGGCAATCAACAGCAAGGACCAGC 818691 28 100.0 33 AAGGACCAGC ............................ TATGCAAGAGTGGCTTTATCAAGTCGCCAATGC 818752 28 100.0 TCGCCAATGC ............................ TTATTTGYAA ========== ====== ====== ====== ========== ============================ 20 28 33 GTATTCCCCATGTATGTGGGGGTGATCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-9.10,-7.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [288,6090] Score: 0.18/0.18 # # Final direction: F [0.64,0.55 Confidence: LOW] >NC_017465 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 820218 29 100.0 32 NNNNNNNNNN ............................. ACAACCAACTGCAAACGGCAACCCAACAGATC 820279 29 100.0 32 NNNNNNNNNN ............................. ACAAAGATGAACTTGTGAAAATGTCTTTCTTG 820340 29 100.0 32 NNNNNNNNNN ............................. CAAGGAAATACATCCCAAGTTTATCTAACTGG 820401 29 100.0 32 NNNNNNNNNN ............................C CCGGTGAAAAGCAAGGCGAACGCTTCTTCCTC 820462 29 100.0 32 NNNNNNNNNN ............................. ACTGGTGATAACTCTGGTCGCCTGATGGTTTT 820523 29 100.0 32 NNNNNNNNNN ............................. AGCTAATGATTTCTTTGGTAGCGTCAGCCAGG 820584 29 100.0 33 NNNNNNNNNN ............................C GGATGTGCATCACGATCATGAAAAACGACCACA 820646 29 100.0 32 NNNNNNNNNN ............................. AGTAAATGGTATCAGGGGGCCGGCGAGTTACA 820707 29 100.0 32 NNNNNNNNNN ............................. TGCTGACAAGGTATTTAAGGACGCCGAGAAAC 820768 29 100.0 32 NNNNNNNNNN ............................. TGTCGGTTGTTCTGCTGATTGCGTTGCTGTGG 820829 29 100.0 32 NNNNNNNNNN ............................. TAAGCCGTTTAGCCATTGCAGCGTTGCTCATA 820890 29 100.0 32 NNNNNNNNNN ............................. CAGTGCCCACCCGGTGGACGTTAGCTCTATCC 820951 29 100.0 32 NNNNNNNNNN ............................. ACCGGCGGGCGAAGTTGGTCAACCTCGTCATT 821012 29 100.0 32 NNNNNNNNNN ............................. GGTATCACCTGAATATGGCGCATCCCATCGTT 821073 29 100.0 32 NNNNNNNNNN ............................. ATGATCCAGGCGAGGCGATTGCTAACGGTAAG 821134 29 100.0 32 NNNNNNNNNN ..........................GTC GACGTTCATACCGAGGCCATTGTCAGTCCAAG 821195 29 100.0 32 NNNNNNNNNN ............................. ACATGGCATACGCTTGAAATTGACTACGATAA 821256 29 100.0 32 NNNNNNNNNN ............................C ATGATATCCATGGTTAGCAGTAGTAATTATGA 821317 29 100.0 32 NNNNNNNNNN ............................. CTTGCTAGACGCTTTCTTCCACTTTGAAAGGG 821378 29 100.0 32 NNNNNNNNNN ............................. ATATCAACGTTTTAAGTTGGTTAGTGTCCCAA 821439 29 100.0 32 NNNNNNNNNN ............................. TGGAAGAGCTGGACGTTGTCAAATGACGGGAA 821500 29 100.0 32 NNNNNNNNNN ............................. TAAGTATTCTTAAAGGAGGTCACACATTACTG 821561 29 100.0 32 NNNNNNNNNN ............................. ACTTATCCATACCAACTTGACTAATTAAATCA 821622 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 24 29 32 GTATTCCCCATGTATGTGGGGGTGATCCT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-9.10,-7.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [2914,3219] Score: 0/0.18 # # Final direction: F [0.78,0.37 Confidence: MEDIUM] >NC_017468 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================== ====== 15808 22 100.0 44 NNNNNNNNNN ...................... TGTAGCAAGGGTTTGCGGGGTGTCGTCAACGAACTTTCGCGAAG 15874 22 100.0 32 NNNNNNNNNN ...................... CGTAGTAAGGGTTTCAACGGTCTCCCGCGAAG 15928 22 100.0 1 NNNNNNNNNN ...................... NNNNNNNNNN ========== ====== ====== ====== ========== ====================== 3 22 38 GTCTATTTTTTAGACTTTCGCT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.18%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [73.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [840,992] Score: 0/0.18 # # Final direction: F [0.27,0 Confidence: MEDIUM] >NC_017467 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 578826 32 100.0 34 NNNNNNNNNN ................................ GGTCAACGATGTTAAAGCAGCCAATCCTTATGAT 578892 32 100.0 36 NNNNNNNNNN ................................ TTTAGTATCCATAGCCTGTAAGTCCTCCATCCACAA 578960 32 100.0 34 NNNNNNNNNN ................................ TTCTAAGCAAAATAAAAGCCACCCGAAGGTGGCA 579026 32 100.0 35 NNNNNNNNNN ................................ TTTGAAGTCCTGTGCCTGCGAACTGGTCAGTATAC 579093 32 100.0 34 NNNNNNNNNN ................................ GTATGGGAACTTTTATCATAATCACTCTTGTTAA 579159 32 100.0 34 NNNNNNNNNN ................................ AAGAAGATACTGCCTGACCGGTTCCACATTAGCA 579225 32 100.0 35 NNNNNNNNNN ................................ ATGTAGTGAGTGGCTTTACCATCAGCTCTCATAAC 579292 32 100.0 34 NNNNNNNNNN ................................ AAAACGAGCTTAAAGCGCCAAAAAACCAATGGAA 579358 32 100.0 35 NNNNNNNNNN ................................ ATCAAGATTGTAGTTGCGCATTAGGAATTGTTTTT 579425 32 100.0 34 NNNNNNNNNN ................................ ATTTGAATATGCACGCAGATGATGATGGCTTTTT 579491 32 100.0 35 NNNNNNNNNN ................................ ATATCTCAATATCAGCTCCCTCCAAATATATTAAG 579558 32 100.0 34 NNNNNNNNNN ................................ ACTTCGCCAACAGCCTTTTCAACCGCGCTATTAA 579624 32 100.0 35 NNNNNNNNNN ................................ AAATATGATGATCCAAACGGTGGCGACAACGGACA 579691 32 100.0 34 NNNNNNNNNN ................................ TTTAAAGACATCGTAGCACCGGCTGAAACTGATC 579757 32 100.0 34 NNNNNNNNNN ................................ ATGATGGGCTACCAGTATCCAACACATTGTCTAA 579823 32 100.0 33 NNNNNNNNNN ................................ AATCGAAAGCTCAATATATCCCTGTGAAATAAC 579888 32 100.0 34 NNNNNNNNNN ................................ CGTTCTGCTGAAGAAATTGCTTTACTAATTCTCT 579954 32 100.0 35 NNNNNNNNNN ................................ TCCGTATGGAATATCGGATAGCGCTTGAACACCAG 580021 32 100.0 34 NNNNNNNNNN ................................ CGCTCTTGCCATATTTCGTAATTGCATATCGAGA 580087 32 100.0 34 NNNNNNNNNN ................................ CTATTGCGTTGTTCATCGCAATAAGATGTAGGGT 580153 32 100.0 35 NNNNNNNNNN ................................ TATCACAGAAAGCAACACTGCTACTTGGCATTCAA 580220 32 100.0 34 NNNNNNNNNN ................................ AAAAGGTGAACCACATCAAGAATCCAAACAAGAT 580286 32 100.0 34 NNNNNNNNNN ................................ AAACCAAGCCATGCCTGATGCTGTATAAGCATCC 580352 32 100.0 34 NNNNNNNNNN ................................ ATAAAGGTCTTTAAGACCAGTACCATTAGCAAAG 580418 32 100.0 34 NNNNNNNNNN ................................ TTGGTTACGACTCTGACAAAAGCAAGAAATCAGA 580484 32 100.0 34 NNNNNNNNNN ................................ GTTTGTATTGCTTAACAATATGACCAAAAATTTT 580550 32 100.0 34 NNNNNNNNNN ................................ AGTTGTTTGTTGATTAGTTACAGTTTTAGTAGTT 580616 32 100.0 35 NNNNNNNNNN ................................ AAAGAACATAGTTTGCAGAACTGTTTCCAAGTAAA 580683 32 100.0 36 NNNNNNNNNN ................................ TCTAAGAACTCTGAAACAGTGTGCTTGATCCAGTGC 580751 32 100.0 36 NNNNNNNNNN ................................ GGCTTTAGATGCGTCAAATGCCGCCTGTGGGCTATC 580819 32 100.0 35 NNNNNNNNNN ................................ ATATACTTGAGAGCCCCACCTTGAGTTTTGCCAAA 580886 32 100.0 35 NNNNNNNNNN ................................ AAAAATTGTTAAATGCAGGATGGAGCTAGACTATG 580953 32 100.0 34 NNNNNNNNNN ................................ ATTGATGGAAAATAGCCAAAGTCAGGGCTATCAA 581019 32 100.0 36 NNNNNNNNNN ................................ CCTCCTAGATTTCTGCCAGTGAGCATTGTGTCTGTG 581087 32 100.0 34 NNNNNNNNNN ................................ ATATAGCACATTAAGGCATGACCGAGTTAATATC 581153 32 100.0 36 NNNNNNNNNN ................................ GCCTTCCTTGACCACATGTGCTTGACAGCCGGTATA 581221 32 100.0 35 NNNNNNNNNN ................................ CAAAAGAACCAGTTCACGTGCCAACAGGTAAGTAA 581288 32 100.0 35 NNNNNNNNNN ................................ ACTGCTAAGGGCAAACCATTGGACTTGCTTAAACA 581355 32 100.0 35 NNNNNNNNNN ................................ ATCAAGCTTGCCAACGGGTCGATTTTATTCTGTGA 581422 32 100.0 34 NNNNNNNNNN ................................ TTTTGAATAGATGGCATGTAAGTCTGATATAGTT 581488 32 100.0 34 NNNNNNNNNN ................................ TTTAGGTCCATTGCACTCTTGCCAGTGAAGTCGT 581554 32 100.0 1 NNNNNNNNNN ................TGCAC.T.TGG.TGTA NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 42 32 34 GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [6,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [163,174] Score: 0/0.18 # # Final direction: F [5.55,0.37 Confidence: HIGH] >NC_017469 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 755503 36 100.0 30 NNNNNNNNNN .................................... ATCATGAATGTAATGTCTAAATTGTCGTTA 755569 36 100.0 30 NNNNNNNNNN .................................... AGAGCTTGCAGTTTACGCCGCTGAGTGATA 755635 36 100.0 30 NNNNNNNNNN .................................... TGCCTCTGTCTTGCTTAATCAATCGTGCCA 755701 36 100.0 30 NNNNNNNNNN .................................... CTGCACTTCCTTTCCAAAATAAGTTTTTGA 755767 36 100.0 30 NNNNNNNNNN .................................... ATAAGGATCCTGATTAACGTTGGATACCTT 755833 36 100.0 30 NNNNNNNNNN .................................... AGTGTTTTTGAATGGGGAAGCAGTTCACAA 755899 36 100.0 30 NNNNNNNNNN .................................... GCCGGGGCAATAGCCCCCGCCAGAGCGTCG 755965 36 100.0 30 NNNNNNNNNN .................................... ATCTGATTTTCAGTCTTGCAAGTAACTAAA 756031 36 100.0 30 NNNNNNNNNN .................................... AACTCTTTGTTTAATTATTTTTTCCTCCAA 756097 36 100.0 30 NNNNNNNNNN .................................... ATCTCCGCGGATATCCTCGAAACTCTCATC 756163 36 100.0 30 NNNNNNNNNN .................................... CGAATACGAAAAGACATTGTACGGCTATTC 756229 36 100.0 30 NNNNNNNNNN .................................... CTTCCCTGGTGCTGGTGTCGATTGCTCCCA 756295 36 100.0 30 NNNNNNNNNN .................................... TGCACTTCAGCAGCAGAGCCTGGACAACTG 756361 36 100.0 30 NNNNNNNNNN .................................... ACTAAGCCCGCCGCCGTGGTATCACCTACA 756427 36 100.0 30 NNNNNNNNNN .................................... TTTTAACGACTTGCCCAGGTCGATTCCCGG 756493 36 100.0 30 NNNNNNNNNN .................................... TATTTTGACGGTAGAAGCACGCAAACATTA 756559 36 100.0 30 NNNNNNNNNN .................................... TACGCAATCTACACAAGACACGCCAAGGGA 756625 36 100.0 30 NNNNNNNNNN .................................... AGGCTGGTAGTGTCAAGGATCAAGCCTAAG 756691 36 100.0 30 NNNNNNNNNN .................................T.. GATCTTGTCAGAGTGGTTGAGCATGTCGTC 756757 36 100.0 1 NNNNNNNNNN ...................................G NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 20 36 30 GTTTTAGAAGGTTGTCTATTCAATAAGGTTTAACCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [981,357] Score: 0.18/0.18 # # Final direction: F [0.59,0 Confidence: HIGH] >NC_017470 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1001645 28 100.0 33 ATCTTTTAGT ............................ CAAAAACAGCTTTAGCACCAGCACTATGGTAAG 1001706 28 100.0 33 CTATGGTAAG ............................ TACTCCCCGAGCTTTTAACCGACGTCGCTTTAA 1001767 28 100.0 33 GTCGCTTTAA ............................ TCATCTATTCGTTGCTTAAAAATTTTTCGTTGT 1001828 28 100.0 33 TTTTCGTTGT ............................ TATTCGGATCGTATGGTCAATTTGCGATTTATA 1001889 28 100.0 33 GCGATTTATA ............................ TTATTCCGTCTGCGTAGTCATAGCCACCAACAA 1001950 28 100.0 33 CCACCAACAA ............................ TAATCAGATTCTAGGAAGGAGGAAAACATGGCA 1002011 28 100.0 33 AAACATGGCA ............................ TAATCAGATTCTAGGAAGGAGGAAAACATGGCA 1002072 28 100.0 33 AAACATGGCA ............................ TATCAGTAACATAGTTGTCCGTGATAGCAGATT 1002133 28 100.0 33 ATAGCAGATT ............................ CGTGGAACGCTTACGGTAACACCGTCAATCGAG 1002194 28 100.0 33 GTCAATCGAG ............................ TCGGCATTGTGGGATGCCAGCGCTGGGCTTTAT 1002255 28 100.0 33 TGGGCTTTAT ............................ CATGGACCACTTGGTTGAAGCCAGCACTAAGCT 1002316 28 100.0 33 GCACTAAGCT ............................ CCAGTCCGACTACCACCAGCTCAAAACAGTGGG 1002377 28 100.0 33 AAACAGTGGG ............................ TGTTTGACCAAGTTTTACAGACTTTAATAATGG 1002438 28 100.0 33 TTAATAATGG ............................ CGTGCGGCGCCACTCGTTTGGCGTGCGGTAAAA 1002499 28 100.0 33 TGCGGTAAAA ............................ TATCCTGAATATTTGCCTATTAATGGGGAATGG 1002560 28 100.0 33 TGGGGAATGG ............................ CGCATTGCAACGCTTGTGGAGTGATACGGCAAC 1002621 28 96.4 ATACGGCAAC ..........................T. CTATTCAA ========== ====== ====== ====== ========== ============================ 17 28 33 GTGTTCTCCACGTAAGTGGAGGTGATCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-9.80,-8.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [73,98] Score: 0/0.18 # # Final direction: F [0.78,0.37 Confidence: MEDIUM] >NC_017470 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1012143 28 100.0 33 NNNNNNNNNN ............................ CACCGTACACCATATTAAACCGTTAAGACTTGA 1012204 28 100.0 33 NNNNNNNNNN ............................ CGAAGACGGCACTTATACGATTGATCTTTGGAA 1012265 28 100.0 33 NNNNNNNNNN ............................ CATTTTTCCGTCGCATTTACGAAAACCATGTAA 1012326 28 100.0 33 NNNNNNNNNN ............................ TACATCGACAATAAAGACCCCAAGGCCCGTATT 1012387 28 100.0 33 NNNNNNNNNN ............................ TAACTATGTAAATCAAACGTTATTAACTCGTAA 1012448 28 100.0 33 NNNNNNNNNN ............................ CGATTGACCGCCAGTAACACGATTTGCCATTCT 1012509 28 100.0 33 NNNNNNNNNN ............................ TTAAACAATACATGCGAACAAATCATTTATTTT 1012570 28 100.0 33 NNNNNNNNNN ............................ TCAATCTATTTAATCTATACTCATAAGCTTTAC 1012631 28 100.0 33 NNNNNNNNNN ............................ TATAAAAAGAATGATCCAGACTACTATAGATGG 1012692 28 100.0 33 NNNNNNNNNN ............................ TGCTGAAGTATTTGACCAGTCTGTACCAACTTT 1012753 28 100.0 33 NNNNNNNNNN ............................ CATTCCAGACGGTGTCGAAGCCTTTAAACTGTC 1012814 28 100.0 33 NNNNNNNNNN ............................ CGCTGACCAGTACGAAACGGCGTTAAGAAGTCG 1012875 28 100.0 33 NNNNNNNNNN ............................ TTAGCACTAATTCGAGCCAGTAATCGAAGTTCT 1012936 28 100.0 33 NNNNNNNNNN ............................ ACAGCGCTACGAATTAGAGCAGAAACAAGAATT 1012997 28 100.0 33 NNNNNNNNNN ............................ TAAGAACTGAAAAAAAGAAAAAAAGCTTTAAAA 1013058 28 100.0 33 NNNNNNNNNN ............................ TTGCCAAACATACATAAAAGCAAATTTTTCGCG 1013119 28 100.0 33 NNNNNNNNNN ............................ TGAAACATCATCAGATAACTTTGCTAATTCGTC 1013180 28 100.0 33 NNNNNNNNNN ............................ TAACTCCCGCATAAATCTAACCGTAATAGAGCG 1013241 28 100.0 1 NNNNNNNNNN ....................A.CA.GTT NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 19 28 33 GTGTTCTCCACGTATGTGGAGGTGATCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-9.00,-8.80] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [31,383] Score: 0.18/0.18 # # Final direction: R [0.41,0.55 Confidence: LOW] >NC_017472 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 40785 36 100.0 30 NNNNNNNNNN .................................... CTTTAATTTTATCATCATTTGGAATATACT 40851 36 100.0 30 NNNNNNNNNN .................................... AAAATACTGATAAATCAATGCTTAGTTTAG 40917 36 100.0 31 NNNNNNNNNN .................................... TAAGCTCATTTCTGCATCTAATACCCGATTG 40984 36 100.0 1 NNNNNNNNNN ..............................G..... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 4 36 30 GTTTTCGGTGGTTGTCATTTCAAGCAGGTAAATACC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [75.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [135,532] Score: 0.18/0.18 # # Final direction: F [1.05,0.18 Confidence: HIGH] >NC_017473 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2287126 36 100.0 30 NNNNNNNNNN .................................... TAACTTCTCGATGGATGTGTTAGGATAATA 2287192 36 100.0 30 NNNNNNNNNN .................................... AACAACTTGGGATTTGATTGTTAAAGTCAT 2287258 36 100.0 30 NNNNNNNNNN .................................... TCCATGGTAAAAACCTCCTATTATTTTGTT 2287324 36 100.0 30 NNNNNNNNNN .................................... TGTTGCAATCGGTGAAAGTATCGCGATTGC 2287390 36 100.0 30 NNNNNNNNNN .................................... ACTTGATCATGCAGAAGGATATTGACGAGT 2287456 36 100.0 30 NNNNNNNNNN .................................... GCGACAATCTCCCGACTGATGATATTGGCC 2287522 36 100.0 30 NNNNNNNNNN .................................... CGATGTGTTCTTGTCAAAACATTTTTTGCG 2287588 36 100.0 30 NNNNNNNNNN .................................... AACATATTGATCAGCCTTTCTTCAACGATC 2287654 36 100.0 30 NNNNNNNNNN .................................... CCATAAAGTTGCTAATTCTAGAAATATTTT 2287720 36 100.0 30 NNNNNNNNNN .................................... TGTCAGCCATAAGCGTGTTAGCCGCTACGA 2287786 36 100.0 30 NNNNNNNNNN .................................... CGAGACCAACACCAGCGCAAGCGAACGCTT 2287852 36 100.0 30 NNNNNNNNNN .................................... GCGCGAGTTGATCGCAACGGAAGGCAGTTT 2287918 36 100.0 30 NNNNNNNNNN .................................... GCCAGTTGTTTAATGGATAAGCCTCTGATA 2287984 36 100.0 30 NNNNNNNNNN .................................... TTCGTCTTTAAGCGGTGCTAACCAATTTGG 2288050 36 100.0 30 NNNNNNNNNN .................................... GGTTTCTTCGTTTACAATCGTGCCGCGATC 2288116 36 100.0 30 NNNNNNNNNN .................................... CGGTCAACTGTTGTGCGGTTTCATCAGTGC 2288182 36 100.0 30 NNNNNNNNNN .................................... AGTGAGCCGGTGCATATTGCACCGGCTTTT 2288248 36 100.0 30 NNNNNNNNNN .................................... TGGTAATGGGTCGTCCGCATTATGATATTC 2288314 36 100.0 30 NNNNNNNNNN .................................... CAGTAGATAAGATTGTTTTTGTCAAGTTTC 2288380 36 100.0 30 NNNNNNNNNN .................................... GGGGTGATTTGTTGCATACCCACAATGTCA 2288446 36 100.0 30 NNNNNNNNNN .................................... GCCGTCTAAGCTGTTGTTCTGGAGAAAACA 2288512 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 22 36 30 GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-2.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [142,26] Score: 0.18/0.18 # # Final direction: F [0.45,0.37 Confidence: LOW] >NC_017501 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1921685 36 100.0 30 NNNNNNNNNN .................................... GTAAAGGTAATGCGCCGCGCATGAGGAATA 1921751 36 100.0 30 NNNNNNNNNN .................................... AGTAGCGGGGTTTTGTTGCGCGACGACCAT 1921817 36 100.0 30 NNNNNNNNNN .................................... CAGCAAGAACGCGCCATGAAACGCGCCGGA 1921883 36 100.0 30 NNNNNNNNNN .................................... GATGCGCGCGCTGACTTTGAAGGAAGTCGG 1921949 36 100.0 30 NNNNNNNNNN .................................... AAGCATCGCTATATGCGGCATAGCAGGCTA 1922015 36 100.0 30 NNNNNNNNNN .................................... TGCTTTCTCTGACTTTGATACAGCGAAGGG 1922081 36 100.0 30 NNNNNNNNNN .................................... TTCGCCGTTGCTTTCGTGCTGTTGGCTGTC 1922147 36 100.0 30 NNNNNNNNNN .................................... AGCAATTTTCCGCCTGTTTTGATGCTCAGG 1922213 36 100.0 30 NNNNNNNNNN .................................... TAAGGACGAACAGCAAAGGACGGAACAGGT 1922279 36 100.0 30 NNNNNNNNNN .................................... TGCTCGAGTGGACAAGTGCGAGGCGCGTAT 1922345 36 100.0 30 NNNNNNNNNN .................................... GTGATTTCCATGCTTGTGTAGATTTTTTGG 1922411 36 100.0 30 NNNNNNNNNN .................................... CCCTCCCCTGTGGGGGAGGGCCGGGGAGAG 1922477 36 100.0 30 NNNNNNNNNN .................................... TTAAATTCACGCGCCACACAGGAAACCCGC 1922543 36 100.0 30 NNNNNNNNNN .................................... TTAAATTCACGCGCCACACAGGAAACCCGC 1922609 36 100.0 30 NNNNNNNNNN .................................... TGTACGAAAAAAATCAAAATCAAAAATAAT 1922675 36 100.0 30 NNNNNNNNNN .................................... TGTACGAAAAAAATCAAAATCAAAAATAAT 1922741 36 100.0 30 NNNNNNNNNN .................................... TCTGAATACTAAATCTGAGGATGTCATGAT 1922807 36 100.0 30 NNNNNNNNNN .................................... GTTACCGATTTTCGTGTTGATGGTAAGCGT 1922873 36 100.0 30 NNNNNNNNNN .................................... GTCCCGATTTAACCCCTGGAAGTGCGGAAG 1922939 36 100.0 30 NNNNNNNNNN .................................... CGTACAGAAAAAATCAAAATCAAAAATTTA 1923005 36 100.0 30 NNNNNNNNNN .................................... ACGCCATCGAATTCATAGACGAACTCCCAC 1923071 36 100.0 30 NNNNNNNNNN .................................... CTTAACGCCATACAAATAGTGTCAATGCTC 1923137 36 100.0 30 NNNNNNNNNN .................................... ACCGAAAAGGCACGCCGTATGCCATCCGCC 1923203 36 100.0 30 NNNNNNNNNN .................................... CAATAAACCGGTCAGCCCCGATAGCCCTGA 1923269 36 100.0 30 NNNNNNNNNN .................................... CGAGTAAGTCAGGCAGCTTTTATAATAGAA 1923335 36 100.0 1 NNNNNNNNNN .......................T...C........ NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 26 36 30 ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.00,-0.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [65,1634] Score: 0.18/0.18 # # Final direction: F [1.05,0.68 Confidence: LOW] >NC_017474 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2318012 36 100.0 30 AGAATATTCA .................................... TAACTTCTCGATGGATGTGTTAGGATAATA 2318078 36 100.0 30 TAGGATAATA .................................... AACAACTTGGGATTTGATTGTTAAAGTCAT 2318144 36 100.0 30 TTAAAGTCAT .................................... TCCATGGTAAAAACCTCCTATTATTTTGTT 2318210 36 100.0 30 TTATTTTGTT .................................... TGTTGCAATCGGTGAAAGTATCGCGATTGC 2318276 36 100.0 30 TCGCGATTGC .................................... ACTTGATCATGCAGAAGGATATTGACGAGT 2318342 36 100.0 30 ATTGACGAGT .................................... GCGACAATCTCCCGACTGATGATATTGGCC 2318408 36 100.0 30 GATATTGGCC .................................... CGATGTGTTCTTGTCAAAACATTTTTTGCG 2318474 36 100.0 30 ATTTTTTGCG .................................... AACATATTGATCAGCCTTTCTTCAACGATC 2318540 36 100.0 30 TTCAACGATC .................................... CCATAAAGTTGCTAATTCTAGAAATATTTT 2318606 36 100.0 30 GAAATATTTT .................................... TGTCAGCCATAAGCGTGTTAGCCGCTACGA 2318672 36 100.0 30 GCCGCTACGA .................................... CGAGACCAACACCAGCGCAAGCGAACGCTT 2318738 36 100.0 30 GCGAACGCTT .................................... GCGCGAGTTGATCGCAACGGAAGGCAGTTT 2318804 36 100.0 30 AAGGCAGTTT .................................... GCCAGTTGTTTAATGGATAAGCCTCTGATA 2318870 36 100.0 30 GCCTCTGATA .................................... TTCGTCTTTAAGCGGTGCTAACCAATTTGG 2318936 36 100.0 426 ACCAATTTGG .................................... GGTTTCTTCGTTTACAATCGTGCCGCGATCGCTCTTGAACTGATTGATTCGACATCTACCTGAGACCGGTCAACTGTTGTGCGGTTTCATCAGTGCGCTCTTGAACTGATTGATTCGACATCTACCTGAGACAGTGAGCCGGTGCATATTGCACCGGCTTTTGCTCTTGAACTGATTGATTCGACATCTACCTGAGACTGGTAATGGGTCGTCCGCATTATGATATTCGCTCTTGAACTGATTGATTCGACATCTACCTGAGACCAGTAGATAAGATTGTTTTTGTCAAGTTTCGCTCTTGAACTGATTGATTCGACATCTACCTGAGACGGGGTGATTTGTTGCATACCCACAATGTCAGCTCTTGAACTGATTGATTCGACATCTACCTGAGACGCCGTCTAAGCTGTTGTTCTGGAGAAAACA 2319398 36 100.0 GGAGAAAACA .................................... CTGTGTTTTC ========== ====== ====== ====== ========== ==================================== 16 36 56 GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-2.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [142,26] Score: 0.18/0.18 # # Final direction: F [0.45,0.37 Confidence: LOW] >NC_017512 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 374160 36 100.0 30 NNNNNNNNNN ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 374226 36 100.0 30 NNNNNNNNNN .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 374292 36 100.0 30 NNNNNNNNNN .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 374358 36 100.0 30 NNNNNNNNNN .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 374424 36 100.0 30 NNNNNNNNNN .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 374490 36 100.0 30 NNNNNNNNNN .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 374556 36 100.0 30 NNNNNNNNNN .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 374622 36 100.0 30 NNNNNNNNNN .................................... CCAAATAGAAATACATACGCCGAGTAATTA 374688 36 100.0 30 NNNNNNNNNN .................................... CAATAACGGCGAGTTTACGCATCAATGCGG 374754 36 100.0 30 NNNNNNNNNN .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 374820 36 100.0 30 NNNNNNNNNN .................................... TTAAAATAATAACCCAATACACGATGTTAA 374886 36 100.0 30 NNNNNNNNNN .................................... TCCTGCCAATTATCATACATAAGATTTTGC 374952 36 100.0 30 NNNNNNNNNN .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 375018 36 100.0 30 NNNNNNNNNN .................................... AAAACCAACCGGGTATTCATACACAGCCAA 375084 36 100.0 30 NNNNNNNNNN .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 375150 36 100.0 29 NNNNNNNNNN .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 375215 36 100.0 30 NNNNNNNNNN .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 375281 36 100.0 30 NNNNNNNNNN .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 375347 36 100.0 30 NNNNNNNNNN .................................... AAAAAAGTTGCGGGATAAGTTACAGTTTGA 375413 36 100.0 30 NNNNNNNNNN .................................... TTCTTCAAATTCCTTAGACGCAATTAATGC 375479 36 100.0 30 NNNNNNNNNN .................................... GAATCTTTAAAGGCAGATTCGGGATTTCCC 375545 36 100.0 30 NNNNNNNNNN .................................... TGATGCGGCGATACAGCGAGCCAGTTGCAT 375611 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 23 36 29 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-0.50,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2326,65] Score: 0.18/0.18 # # Final direction: R [0.68,1.05 Confidence: LOW] >NC_017474 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2319002 36 100.0 30 TGCCGCGATC .................................... CGGTCAACTGTTGTGCGGTTTCATCAGTGC 2319068 36 100.0 30 TCATCAGTGC .................................... AGTGAGCCGGTGCATATTGCACCGGCTTTT 2319134 36 100.0 30 ACCGGCTTTT .................................... TGGTAATGGGTCGTCCGCATTATGATATTC 2319200 36 100.0 30 TATGATATTC .................................... CAGTAGATAAGATTGTTTTTGTCAAGTTTC 2319266 36 100.0 30 GTCAAGTTTC .................................... GGGGTGATTTGTTGCATACCCACAATGTCA 2319332 36 100.0 30 CACAATGTCA .................................... GCCGTCTAAGCTGTTGTTCTGGAGAAAACA 2319398 36 100.0 GGAGAAAACA .................................... CTGTGTTTTC ========== ====== ====== ====== ========== ==================================== 7 36 30 GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-2.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [489,26] Score: 0.18/0.18 # # Final direction: R [0.18,0.37 Confidence: MEDIUM] >NC_017477 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1199794 36 100.0 30 NNNNNNNNNN A.GAGT.C.A.AT....................... GTTATAATCCTCTTGTATAATTATATTTTT 1199860 36 100.0 30 NNNNNNNNNN .........T.....C......T............. CTTTTGCTTTATCTTCAACATCATCCATAG 1199926 36 100.0 30 NNNNNNNNNN .................................... ATCAATACCGTACAGGTTTTTAATTGTATC 1199992 36 100.0 30 NNNNNNNNNN .................................... TAAACGTATCAATCTCTGTATGTTTGCTTA 1200058 36 100.0 30 NNNNNNNNNN .................................... TAAATTACGTCTCGAATTAAACAACATTAA 1200124 36 100.0 30 NNNNNNNNNN .................................... TATTTAAAGGCTAGTAACTCACTAGCCTTT 1200190 36 100.0 30 NNNNNNNNNN .................................... TTTCTTTCTGTATCTTTAGCTCCTATATCA 1200256 36 100.0 30 NNNNNNNNNN ...T................................ TTTCTTTCTGTATCTTTAGCTCCTATATCA 1200322 36 100.0 30 NNNNNNNNNN .................................... ATCTTCTTGAAGAACGAGGATATATTGTCA 1200388 36 100.0 30 NNNNNNNNNN .................................... TGCTTGCTTAGCATTCATCCAAGTTGTATT 1200454 36 100.0 30 NNNNNNNNNN .................................... TCCTATCTTTTAATAATTCACGTATTTCTT 1200520 36 100.0 30 NNNNNNNNNN .................................... CAAAACCATCTGAATCAAAATCACAGCAGG 1200586 36 100.0 30 NNNNNNNNNN .................................... TAATCAGCTGGGCTGTGATTGCCTCCTTAG 1200652 36 100.0 30 NNNNNNNNNN .................................... GGAACAACAAGTTCTGAAAGAACAACGAGA 1200718 36 100.0 30 NNNNNNNNNN .................................... GGAGCGTTAAATACACTTTTGACTAATTTG 1200784 36 100.0 30 NNNNNNNNNN .................................... TGAGGCTGGTGTGATTGTACCTAAAGAGGT 1200850 36 100.0 30 NNNNNNNNNN .................................... TTTCTCAATTTAATAAACAATATCGTGAAG 1200916 36 100.0 30 NNNNNNNNNN .................................... AATGATAAGAGCTTATATTGTAGAGCCACG 1200982 36 100.0 30 NNNNNNNNNN .................................... GCACTATTGGGAATATGTTTACGGTACATG 1201048 36 100.0 30 NNNNNNNNNN .................................... TTGATGATACCAGAGATACTGATAGCAACG 1201114 36 100.0 30 NNNNNNNNNN .................................... GCTTCCCATGCAGTCACTAGAATATTGATA 1201180 36 100.0 30 NNNNNNNNNN .................................... GAGAATGAAGAACGGCAATCAGTCTTTGAA 1201246 36 100.0 30 NNNNNNNNNN .................................... AGAATTGCTGCTTAATCTTCTGAAATGCTG 1201312 36 100.0 30 NNNNNNNNNN .................................... GAACATTAGTTGTTAATAACGTCTGATTAA 1201378 36 100.0 30 NNNNNNNNNN .................................... GTACTATCGGAAACATGTTTTCAGTACATG 1201444 36 100.0 30 NNNNNNNNNN .................................... CAGCAGGTATGCCATTTTTAAAAGGATAAC 1201510 36 100.0 30 NNNNNNNNNN .................................... TTTCTATGATGACAAAGGTACTGTTTTAGG 1201576 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 28 36 30 GATCTAAACCTTATTGATCTAACAACCATCTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:69.44%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-2.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [81.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2100,35] Score: 0.18/0.18 # # Final direction: R [0.45,0.78 Confidence: LOW] >NC_017479 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 9893 35 100.0 19 NNNNNNNNNN ................................... CACTTCCGCAGGAGACTGC 9947 35 100.0 31 NNNNNNNNNN ................................... CACTTCCGCATAAGTCCGTTGATGAGACCGC 10013 35 100.0 1 NNNNNNNNNN ................................... NNNNNNNNNN ========== ====== ====== ====== ========== =================================== 3 35 25 TCAAACCCTTGATACAAGCGGAAATGTGAAAATCA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-3.50,-3.50] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [53.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [1520,936] Score: 0/0.18 # # Final direction: R [0,0.27 Confidence: MEDIUM] >NC_017517 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1924165 36 100.0 30 NNNNNNNNNN .................................... TACTTAATACATACTCACTTTCAATCGTTA 1924231 36 100.0 30 NNNNNNNNNN .................................... CATTGATGCGTAAACTCGCCGTTATTGCGT 1924297 36 100.0 30 NNNNNNNNNN .................................... ACGCACCCCCAGCACAGTTATCATCTTCTG 1924363 36 100.0 30 NNNNNNNNNN .......T............................ ACTAAAATAATATAAATTAAAACTTTGGAA 1924429 36 100.0 30 NNNNNNNNNN .................................... GATGGGAACTTAGTTCTTAAATCTTTCTCA 1924495 36 100.0 30 NNNNNNNNNN .................................... ATCTGCGGACGCGCATTGTCGGGCAGCAAA 1924561 36 100.0 30 NNNNNNNNNN .................................... ACGCCATCGAATTCATAGACGAACTCCCAC 1924627 36 100.0 30 NNNNNNNNNN .................................... TGTATAGAAAAAATCAAAATCAAAAATTTA 1924693 36 100.0 30 NNNNNNNNNN .................................... TATATGCCGAAGCCATTACTGAAGTGAAAG 1924759 36 100.0 30 NNNNNNNNNN .................................... GATGGGAACTTAGTTCTTAAATCTTTCTCA 1924825 36 100.0 30 NNNNNNNNNN .................................... ACGCCGTCGAACTCATAGACAAACTCACGT 1924891 36 100.0 30 NNNNNNNNNN .............A...................... GAAGCTGCTGACTATGAAAATGATTTGCTT 1924957 36 100.0 30 NNNNNNNNNN .................................... TCGTGCAGGATTCGGTTTTCCACCTCCCAA 1925023 36 100.0 30 NNNNNNNNNN .................................... CAAGAAGTCCGCCAGTTCGTGTAGTGACGG 1925089 36 100.0 30 NNNNNNNNNN .................................... CTTAACGCCATACAAATAGTGTCAATGCTC 1925155 36 100.0 30 NNNNNNNNNN .................................... ACCGAAAAGGCACGCCGTATGCCATCCGCC 1925221 36 100.0 30 NNNNNNNNNN .................................... CGAGTAAGTCAGGCAGCTTTTATAATAGAA 1925287 36 100.0 1 NNNNNNNNNN .......................T...C........ NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 18 36 30 ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.00,-0.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [65,288] Score: 0.18/0.18 # # Final direction: F [1.05,0.68 Confidence: LOW] >NC_017517 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1925023 37 100.0 29 CACCTCCCAA ..................................... AAGAAGTCCGCCAGTTCGTGTAGTGACGG 1925089 37 100.0 29 GTAGTGACGG ..................................... TTAACGCCATACAAATAGTGTCAATGCTC 1925155 37 97.3 29 GTCAATGCTC ....................................A CCGAAAAGGCACGCCGTATGCCATCCGCC 1925221 37 100.0 29 GCCATCCGCC ..................................... GAGTAAGTCAGGCAGCTTTTATAATAGAA 1925287 37 94.6 TATAATAGAA .......................T...C......... AGCCGTTGCG ========== ====== ====== ====== ========== ===================================== 5 37 29 ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.05%AT] # Reference repeat match suggestion: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 97% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.00,-0.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [48.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [923,287] Score: 0.18/0.18 # # Final direction: F [0.96,0.77 Confidence: LOW] >NC_017481 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 121320 36 100.0 30 NNNNNNNNNN ..........G.............T........... AGAGGCTAAGGGTGGTAATACTTTTACGCC 121386 36 100.0 30 NNNNNNNNNN ..........G.............T........... TATCTATCGTATTTATCCGCCTTAGGTTTA 121452 36 100.0 30 NNNNNNNNNN .................................... CTGCGATACTGTATATACCTTGAGCAACTT 121518 36 100.0 30 NNNNNNNNNN .................................... AGAAAGCCAAATGAATAGTGGTTGGAATAA 121584 36 100.0 30 NNNNNNNNNN .................................... TCTGATAGCCAGAGAAATGAATATTGTAAA 121650 36 100.0 30 NNNNNNNNNN .................................... ACGTTTGACTAACGTAAGCAAAGTTAAAGC 121716 36 100.0 30 NNNNNNNNNN .................................... AGTAATGAATAGTTAAGTATAAGCGTTTAT 121782 36 100.0 30 NNNNNNNNNN .................................... TAAGCCCGTTAATAGTGGTGATACACAGCA 121848 36 100.0 30 NNNNNNNNNN .................................... TTATCTCTATGAAGAAATTCAAGCTATTTA 121914 36 100.0 30 NNNNNNNNNN .................................... TGGGTCAATTAACTACAATGTTATGACTAA 121980 36 100.0 30 NNNNNNNNNN .................................... TTCACAAAAAGCTATCAAAGAGACTACTGA 122046 36 100.0 30 NNNNNNNNNN .................................... TAACCGCTAATGTTAGATATGACGAAAGAT 122112 36 100.0 30 NNNNNNNNNN .................................... TTAAAGCAGTTGGCAAGGTTGGAGATGCAA 122178 36 100.0 30 NNNNNNNNNN .................................... GAAGTTTTACATTATGAAGCCCAAGCAAGG 122244 36 100.0 30 NNNNNNNNNN .................................... AGCGTATGTTGACGCTTATGATGGTTGGTT 122310 36 100.0 30 NNNNNNNNNN .................................... AAAATTATATTATAAGGAGTGCGGTTTTGT 122376 36 100.0 30 NNNNNNNNNN .................................... AAGGCGGTGAGATTAGTTGCAATGGCTAAA 122442 36 100.0 30 NNNNNNNNNN .................................... ACGGTATTAGTGGATCTAGTTCCGCTGGTA 122508 36 100.0 30 NNNNNNNNNN .................................... AAAGGGCTTGAGAAACAAGTTTGGTCAGAT 122574 36 100.0 30 NNNNNNNNNN .................................... ACAGCAATTTATAAGTTATCTCGCGATTGG 122640 36 100.0 30 NNNNNNNNNN .................................... CAATTCACACCGCAGTTCAATCAGCTTACG 122706 36 100.0 30 NNNNNNNNNN .................................... TGCTTTACCTTTTAATGTGTCTTTAAGCGA 122772 36 100.0 30 NNNNNNNNNN .................................... AGAAATCACATACAAGCTGCTATATGTTGG 122838 36 100.0 30 NNNNNNNNNN .................................... TAACGTTGTAGCGTTTCTATACCGGCCAGA 122904 36 100.0 30 NNNNNNNNNN .................................... CAGATTCCATAATCTTTATCTACGTTCTCT 122970 36 100.0 30 NNNNNNNNNN .................................... AAATTGATATTTTAACACGCTACCACCATC 123036 36 100.0 30 NNNNNNNNNN ..................................AT GGTTCTGAGCCTAGTTAGAATGACATAGGT 123102 36 100.0 1 NNNNNNNNNN ..........A..A......T...T..A....T.T. NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 28 36 30 GTTTCAGAAGTATGTTAAATCAATAAGGTTAAGACC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:69.44%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [33,611] Score: 0.18/0.18 # # Final direction: F [0.41,0.18 Confidence: MEDIUM] >NC_017482 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2260261 36 100.0 30 NNNNNNNNNN CACTGAAGTT.TT....................... TATTCAAACTGCATAGCAACTTTTCCAAGT 2260327 36 100.0 30 NNNNNNNNNN AT.................................. GAGGCATGTTAGACGTCATATTTGCTGAAA 2260393 36 100.0 30 NNNNNNNNNN C................................... TCTCGACAACAACCCGTTTTGGCACCACAA 2260459 36 100.0 30 NNNNNNNNNN .................................... TGAAATAATTGTTGACACGTGAGAACACAG 2260525 36 100.0 30 NNNNNNNNNN .................................... ACTGGCATCAATCATCATGAAGTATGCGAT 2260591 36 100.0 30 NNNNNNNNNN .................................... TTAGTGGCAGAGAGGTAATGATGATCACAC 2260657 36 100.0 30 NNNNNNNNNN .................................... GCATATAGCTTGATATTGGCCGCAAGCTCG 2260723 36 100.0 30 NNNNNNNNNN .................................... TTTCTGTCGGGTTTGTGGAATGGCACTGTG 2260789 36 100.0 30 NNNNNNNNNN .................................... GTCTAGCCCGAGAAGTTCCGCGGCTTTTTT 2260855 36 100.0 30 NNNNNNNNNN .................................... CATAAGGTGGCAGCGGCCATTTGTGTTTTT 2260921 36 100.0 30 NNNNNNNNNN .................................... TTTAAATGCGTATTTTCTTTTCTCAACTGT 2260987 36 100.0 30 NNNNNNNNNN .................................... CGCAGTCTTGCAAGCCGTAATGCTCGATCT 2261053 36 100.0 30 NNNNNNNNNN .................................... CCCATAGGCCTAGCTGTCGCCCGTAAGGCG 2261119 36 100.0 30 NNNNNNNNNN .................................... ACAGCCGTCTTGATCTTGTCAGCATCACCC 2261185 36 100.0 30 NNNNNNNNNN .................................... GGGGCTTCTGCAATCTGGAATGCCCTTGGA 2261251 36 100.0 30 NNNNNNNNNN .................................... TAGAATACTACCTTTTGGCACAATATTATT 2261317 36 100.0 30 NNNNNNNNNN .................................... TCAATCGTCATGCCAAGCGGCATAGCACCT 2261383 36 100.0 30 NNNNNNNNNN .................................... TAGTGATCATATTCATGCAACACAAACGGT 2261449 36 100.0 30 NNNNNNNNNN ...............A.................... TTGACAAGTCAAAGTGCTCATACAAGTATG 2261515 36 100.0 30 NNNNNNNNNN .................................... TGAACTCATCGCTTACCGGCAACCAGTCAT 2261581 36 100.0 30 NNNNNNNNNN .................................... GGTGGCATCACAGAAGCAACCGAAACAATC 2261647 36 100.0 30 NNNNNNNNNN .................................... AAGTGGTAAGGTCCCCAAAGATTCGATGAT 2261713 36 100.0 30 NNNNNNNNNN .................................... AGCATCCTATATTTCCATGAATACTGATGA 2261779 36 100.0 30 NNNNNNNNNN .................................... AAGCAATCCAGAAACTCGGGATCGTTTCTT 2261845 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 25 36 30 GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-2.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [15-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [370,22] Score: 0.18/0.18 # # Final direction: R [0.18,0.78 Confidence: MEDIUM] >NC_017482 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2260329 36 94.4 30 TTCCAAGTAT --.................................. GAGGCATGTTAGACGTCATATTTGCTGAAA 2260395 36 97.2 30 TTTGCTGAAA C................................... TCTCGACAACAACCCGTTTTGGCACCACAA 2260461 36 100.0 30 GGCACCACAA .................................... TGAAATAATTGTTGACACGTGAGAACACAG 2260527 36 100.0 30 GAGAACACAG .................................... ACTGGCATCAATCATCATGAAGTATGCGAT 2260593 36 100.0 30 AGTATGCGAT .................................... TTAGTGGCAGAGAGGTAATGATGATCACAC 2260659 36 100.0 30 ATGATCACAC .................................... GCATATAGCTTGATATTGGCCGCAAGCTCG 2260725 36 100.0 30 CGCAAGCTCG .................................... TTTCTGTCGGGTTTGTGGAATGGCACTGTG 2260791 36 100.0 30 TGGCACTGTG .................................... GTCTAGCCCGAGAAGTTCCGCGGCTTTTTT 2260857 36 100.0 30 CGGCTTTTTT .................................... CATAAGGTGGCAGCGGCCATTTGTGTTTTT 2260923 36 100.0 30 TTGTGTTTTT .................................... TTTAAATGCGTATTTTCTTTTCTCAACTGT 2260989 36 100.0 30 TCTCAACTGT .................................... CGCAGTCTTGCAAGCCGTAATGCTCGATCT 2261055 36 100.0 30 TGCTCGATCT .................................... CCCATAGGCCTAGCTGTCGCCCGTAAGGCG 2261121 36 100.0 30 CCGTAAGGCG .................................... ACAGCCGTCTTGATCTTGTCAGCATCACCC 2261187 36 100.0 30 AGCATCACCC .................................... GGGGCTTCTGCAATCTGGAATGCCCTTGGA 2261253 36 100.0 30 TGCCCTTGGA .................................... TAGAATACTACCTTTTGGCACAATATTATT 2261319 36 100.0 30 CAATATTATT .................................... TCAATCGTCATGCCAAGCGGCATAGCACCT 2261385 36 100.0 30 CATAGCACCT .................................... TAGTGATCATATTCATGCAACACAAACGGT 2261451 36 97.2 30 CACAAACGGT ...............A.................... TTGACAAGTCAAAGTGCTCATACAAGTATG 2261517 36 100.0 30 TACAAGTATG .................................... TGAACTCATCGCTTACCGGCAACCAGTCAT 2261583 36 100.0 30 AACCAGTCAT .................................... GGTGGCATCACAGAAGCAACCGAAACAATC 2261649 36 100.0 30 CGAAACAATC .................................... AAGTGGTAAGGTCCCCAAAGATTCGATGAT 2261715 36 100.0 30 ATTCGATGAT .................................... AGCATCCTATATTTCCATGAATACTGATGA 2261781 36 100.0 30 ATACTGATGA .................................... AAGCAATCCAGAAACTCGGGATCGTTTCTT 2261847 36 100.0 ATCGTTTCTT .................................... CGGTGTTTTC ========== ====== ====== ====== ========== ==================================== 24 36 30 GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-2.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [438,20] Score: 0.18/0.18 # # Final direction: R [0.18,0.78 Confidence: MEDIUM] >NC_017502 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 924384 36 100.0 30 NNNNNNNNNN .................................... ATTTTCTCTTGGAAAATTACCAATTATACC 924450 36 100.0 30 NNNNNNNNNN .................................... CAAGATTTTAAATTCTGTTATAATCACCAC 924516 36 100.0 30 NNNNNNNNNN .................................... TTTTGCAACAGCTGGAATCGTTAGTGTGAT 924582 36 100.0 30 NNNNNNNNNN .................................... TTTAAGTGCGCTAAAACAAACTTTTTGTTA 924648 36 100.0 30 NNNNNNNNNN .................................... TTTAAGTGCGCCAAAACAAACTGTTTGTTA 924714 36 100.0 30 NNNNNNNNNN .................................... ACGAATCAAATTATTATTTGAATACAATCG 924780 36 100.0 30 NNNNNNNNNN .................................... TCGCGCGAAGAATAGTATAACACTTGTTTA 924846 36 100.0 30 NNNNNNNNNN .................................... AATTTAAATATTTGTTTATAATTATTATGT 924912 36 100.0 30 NNNNNNNNNN .................................... TATAGAACCTGTTGCTCTATTTGCTTTTGA 924978 36 100.0 30 NNNNNNNNNN .................................... TATTTTTTAAATGTGTAACCTTCTTTTTCA 925044 36 100.0 30 NNNNNNNNNN .................................... TAAATAATTTACTCGCATTAACTTTAGCTA 925110 36 100.0 30 NNNNNNNNNN .................................... AGAATAAAGGGTTAGATAGTTCTTGTTTTT 925176 36 100.0 30 NNNNNNNNNN .................................... TCCCATACAAAACCCGTCTTTGGACGGGTT 925242 36 100.0 30 NNNNNNNNNN .................................... AAAGCAAATAGAGTAACAGGTTCTATAACC 925308 36 100.0 30 NNNNNNNNNN .................................... AAATTTAAAATTGCCTATTGAATTCGTGAA 925374 36 100.0 30 NNNNNNNNNN .................................... TTTTTGGTTTAAAAAAGAACCACAGGGTAA 925440 36 100.0 30 NNNNNNNNNN .................................... AGTTAACATCAATGTAATAAATTTGACCTA 925506 36 100.0 30 NNNNNNNNNN .................................... ATGTTAACTCGATGTATCCTTACGTAATGA 925572 36 100.0 30 NNNNNNNNNN .................................... CTTTTTGTGCCAATTTACCGTACAAAGAGT 925638 36 100.0 30 NNNNNNNNNN .................................... AAAAACGTCGTCAATTGCGCTAGATCAGCC 925704 36 100.0 31 NNNNNNNNNN .................................... CAAGTCGATATAATTAAGCTATTTGATCCTA 925771 36 100.0 30 NNNNNNNNNN .................................... CGCCTAATAACCCACTACTAAACGCCACCC 925837 36 100.0 30 NNNNNNNNNN .................................... ATTAAAATTTAAATTATAAAATTCGCCAGC 925903 36 100.0 30 NNNNNNNNNN .................................... CTACTTCATTAAATCTACCCTCTGGAATAA 925969 36 100.0 30 NNNNNNNNNN .................................... TTAAAAAACGCAATTGTATCGTTTTGACGA 926035 36 100.0 30 NNNNNNNNNN .................................... CACACGATTGTCTTAAAGTCAAATCCTTCA 926101 36 100.0 30 NNNNNNNNNN .................................... GTTGAGCTAATTGGACTTAAAGCAAATATT 926167 36 100.0 30 NNNNNNNNNN .................................... TTGTTGTCGTAAAAATAGTTGATTGTATCG 926233 36 100.0 30 NNNNNNNNNN .................................... AGACTGTTTGGTGTAACTATTTATGTCGTA 926299 36 100.0 30 NNNNNNNNNN .................................... CACACGATAGTGTTAAAAACAAACCCATCG 926365 36 100.0 30 NNNNNNNNNN .................................... TTGTTTGATTTATTGGGTCGGTATAAGTTG 926431 36 100.0 30 NNNNNNNNNN .................................... AAATCTGAATGTTTGGTAATCTTCATGGTG 926497 36 100.0 30 NNNNNNNNNN .................................... TCGAAGTAGGCAAAACTTAATATTACGACT 926563 36 100.0 30 NNNNNNNNNN .................................... AATGAAGTAGATATCGTTAACTTCTTTTGT 926629 36 100.0 30 NNNNNNNNNN .................................... GTTTTGTCAAAATTAAATGTTACGGACTTA 926695 36 100.0 30 NNNNNNNNNN .................................... TTTGTTGCTGGTTTTATAAACTAAACCACT 926761 36 100.0 30 NNNNNNNNNN .................................... AGTTGGTAAGTTAAACGTAGTTGTATTAGT 926827 36 100.0 30 NNNNNNNNNN .................................... AAAAAATAATTGAGTCAGTGTCGCAATATA 926893 36 100.0 30 NNNNNNNNNN .................................... ATAAAAATTTATAAGATCGCTTATGTAGTT 926959 36 100.0 30 NNNNNNNNNN .................................... CTCTAATCACTCACGTTTAAGTGTTTTGCG 927025 36 100.0 30 NNNNNNNNNN .................................... TACGTCGTTTAACTTTTTGGTTCTAAAGAG 927091 36 100.0 30 NNNNNNNNNN .................................... AATTTTTTCAAAAACTATTGACAAATTCAA 927157 36 100.0 30 NNNNNNNNNN .................................... AAGTGGTGTAGTTAGTTATAAAGGGTGGGT 927223 36 100.0 30 NNNNNNNNNN .................................... TAGAACAAATTAATCGAGATTTGCAACTTC 927289 36 100.0 30 NNNNNNNNNN .................................... TTGACAATCTTATGATCTCAACTCACCCGC 927355 36 100.0 30 NNNNNNNNNN .................................... CGTTCGGTTGAGCCGTAGTTTTCTGTCGTA 927421 36 100.0 30 NNNNNNNNNN .................................... ATATTTAAAGTTGTTAAATAGCTTAACGGT 927487 36 100.0 30 NNNNNNNNNN .................................... AAAAAGTTGATATTTTGGTTGCCCAAATAG 927553 36 100.0 30 NNNNNNNNNN .................................... AATCCAACAAACGATACGGATGGTGTTAAT 927619 36 100.0 30 NNNNNNNNNN .................................... TTTGTATAGCTATTTATGTCATAGATATAA 927685 36 100.0 30 NNNNNNNNNN .................................... TTAATCTTAAAATAATAACTGTCTACTTGT 927751 36 100.0 30 NNNNNNNNNN .................................... TAAATGTTGACAAAACACTTGGAATGTTGT 927817 36 100.0 30 NNNNNNNNNN .................................... TGTCCCAGTTTTTGGTGTTCTATTTAATGA 927883 36 100.0 30 NNNNNNNNNN .................................... TAAAGTCCATTAAGCTAACAATTTTACTCA 927949 36 100.0 30 NNNNNNNNNN .................................... TTGGGTCGGTATATGTTGCTAATTTATAAA 928015 36 100.0 30 NNNNNNNNNN .................................... GAATCAAGATAAAAACAAAGTCGTGATCTC 928081 36 100.0 30 NNNNNNNNNN .................................... ATCCATCACTAGAATTTGGTTAGCACGATC 928147 36 100.0 30 NNNNNNNNNN .................................... TTAATTTTCACAATTGCGGTTGATAGTGCT 928213 36 100.0 30 NNNNNNNNNN .................................... TTAAAAAACGCAATTGTATCGTTTTGACGA 928279 36 100.0 30 NNNNNNNNNN .................................... AAAAGCATATTGTAGAAGTTGTAAGTAACG 928345 36 100.0 30 NNNNNNNNNN .................................... GTTTTGTCAAAATTAAATGTTACGGACTTA 928411 36 100.0 30 NNNNNNNNNN .................................... TTTGTTGCTGGTTTTATAAACTAAACCACT 928477 36 100.0 30 NNNNNNNNNN .................................... AGTTGGTAAGTTAAACGTAGTTGTATTAGT 928543 36 100.0 30 NNNNNNNNNN .................................... AAAAAATAATTGAGTCAGTGTCGCAATATA 928609 36 100.0 30 NNNNNNNNNN .................................... ATAAAAATTTATAAGATCGCTTATGTAGTT 928675 36 100.0 30 NNNNNNNNNN .................................... CTCTAATCACTCACGTTTAAGTGTTTTGCG 928741 36 100.0 30 NNNNNNNNNN .................................... TACGTCGTTTAACTTTTTGGTTCTAAAGAG 928807 36 100.0 30 NNNNNNNNNN .................................... AATTTTTTCAAAAACTATTGACAAATTCAA 928873 36 100.0 30 NNNNNNNNNN .................................... AAGTGGTGTAGTTAGTTATAAAGGGTGGGT 928939 36 100.0 30 NNNNNNNNNN .................................... TAGAACAAATTAATCGAGATTTGCAACTTC 929005 36 100.0 30 NNNNNNNNNN .................................... CGTTCGGTTGAGCCGTAGTTTTCTGTCGTA 929071 36 100.0 30 NNNNNNNNNN .................................... ATATTTAAAGTTGTTAAATAGCTTAACGGT 929137 36 100.0 30 NNNNNNNNNN .................................... AAAAAGTTGATATTTTGGTTGCCCAAATAG 929203 36 100.0 30 NNNNNNNNNN .................................... AATCCAACAAACGATACGGATGGTGTTAAT 929269 36 100.0 30 NNNNNNNNNN .................................... TTTGTATAGCTATTTATGTCATAGATATAA 929335 36 100.0 30 NNNNNNNNNN .................................... TAAATGTTGACAAAACACTTGGAATGTTGT 929401 36 100.0 30 NNNNNNNNNN .................................... TGTCCCAGTTTTTGGTGTTCTATTTAATGA 929467 36 100.0 30 NNNNNNNNNN .................................... TAAAGTCCATTAAGCTAACAATTTTACTCA 929533 36 100.0 30 NNNNNNNNNN .................................... TTGGGTCGGTATATGTTGCTAATTTATAAA 929599 36 100.0 30 NNNNNNNNNN .................................... GAATCAAGATAAAAACAAAGTCGTGATCTC 929665 36 100.0 30 NNNNNNNNNN .................................... ATCCATCACTAGAATTTGGTTAGCACGATC 929731 36 100.0 30 NNNNNNNNNN .................................... TTAATTTTCACAATTGCGGTTGATAGTGCT 929797 36 100.0 30 NNNNNNNNNN .................................... TTAAAAAACGCAATTGTATCGTTTTGACGA 929863 36 100.0 30 NNNNNNNNNN .................................... AAAAGCATATTGTAGAAGTTGTAAGTAACG 929929 36 100.0 30 NNNNNNNNNN .................................... ACTAACAACTCTAACGTCTCATTTTTCATA 929995 36 100.0 30 NNNNNNNNNN .................................... TGACTTTAAATGATATCCGCAACATTGATA 930061 36 100.0 30 NNNNNNNNNN .................................... TTATTATCAAAAATGCCAAGACAACAGTCT 930127 36 100.0 30 NNNNNNNNNN .................................... TATTTGTCAATAAGCCGTCTTGAGTTCGTT 930193 36 100.0 30 NNNNNNNNNN .................................... CAAGACATTTTAATGTTACTAAACGGTCTT 930259 36 100.0 30 NNNNNNNNNN .................................... GTTATGCAGATAAGTTTCACACCGACTACT 930325 36 100.0 30 NNNNNNNNNN .................................... TTAAAGTGCCGATAGTTTGTCAGATGTGTT 930391 36 100.0 30 NNNNNNNNNN .................................... TGTCAAATATATAAACGTGTTTTAAGTTAG 930457 36 100.0 30 NNNNNNNNNN .................................... AAAACCAGCTGATTTAGACGACACAAATAA 930523 36 100.0 30 NNNNNNNNNN .................................... TCTTAATCAATGAACCCGCACCATATTTTA 930589 36 100.0 30 NNNNNNNNNN .................................... TTCATTAAACCAGATTTAATTTATGGTGCA 930655 36 100.0 30 NNNNNNNNNN .................................... CTTTTATCATAATACTTATTGTAAAATTCG 930721 36 100.0 30 NNNNNNNNNN .................................... TTTCTTGATATAAGGATATAATATAATCAT 930787 36 100.0 30 NNNNNNNNNN .................................... AAAAACTTGACAAAATTAAAAATAAAAGTT 930853 36 100.0 30 NNNNNNNNNN .................................... AAAATTCTAATTAACATTCATCCAGGTTCT 930919 36 100.0 30 NNNNNNNNNN .................................... TGTCGCTATACCCAAACCCAAGTTTTTCCA 930985 36 100.0 30 NNNNNNNNNN .................................... TTAACTTTAGTTTTTCTGAATTTAGTCTAT 931051 36 100.0 30 NNNNNNNNNN .................................... TATTACAGATATAAAAGAAATTAAAAAGAT 931117 36 100.0 30 NNNNNNNNNN .................................... TTTAATGTGTATTTAGCGTTATGGTTTTTA 931183 36 100.0 30 NNNNNNNNNN .................................... AAAAATAGGTACAAAAAATTGTTTTAAGTT 931249 36 100.0 29 NNNNNNNNNN .................................... ATAAACTGCAATTTTTTCTCGATGAACCA 931314 36 100.0 1 NNNNNNNNNN .............G...................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 106 36 30 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.70,-2.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [78.3-83.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [23,85] Score: 0.18/0.18 # # Final direction: F [0.41,0.18 Confidence: MEDIUM] >NC_017503 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 894507 36 100.0 30 NNNNNNNNNN .................................... ATTTACGAGCTAATTGGACTTAAGTAAATA 894573 36 100.0 30 NNNNNNNNNN .................................... ATTTTAGCGAACCTAACTGATATTGTTACT 894639 36 100.0 30 NNNNNNNNNN .................................... ATCAACAACTGTATCAACGCTTTCTAACCG 894705 36 100.0 30 NNNNNNNNNN .................................... AAAGTGAAACTTGAGTAAGTCAAGTTACCG 894771 36 100.0 30 NNNNNNNNNN .................................... TTATTGAACAACTTAAAACACTTGACAAAC 894837 36 100.0 30 NNNNNNNNNN .................................... TATCCCCGAAAACATAAAAAACATTCAATG 894903 36 100.0 30 NNNNNNNNNN .................................... AACATCTAGACTTGACAAATAACGTTCGAC 894969 36 100.0 30 NNNNNNNNNN .................................... AACCGAACGAACTTTTTCAAACTTAAGAAT 895035 36 100.0 30 NNNNNNNNNN .................................... TTGCCCATATTTGGTTTATGGTAGTGTACT 895101 36 100.0 30 NNNNNNNNNN .................................... AAATTTTAGTGATGGATCGTCAGTTGTTCA 895167 36 100.0 30 NNNNNNNNNN .................................... ATTTTAAAGATAAAACTGCGCTTGAAGTGG 895233 36 100.0 30 NNNNNNNNNN .................................... CAAATTTAAAACACGTTTATATTTTTGACA 895299 36 100.0 30 NNNNNNNNNN .................................... GCAGGTATATATATAACAAGTCAAGCGCGT 895365 36 100.0 30 NNNNNNNNNN .................................... GAAAACGTCATCTTAACGACTTCGTTGTTG 895431 36 100.0 30 NNNNNNNNNN .................................... ACTCGATCATTTTTTCAGCTCAAAATTTAG 895497 36 100.0 30 NNNNNNNNNN .................................... TGAATCCATAGGAATTATTTCATCAAAAAT 895563 36 100.0 30 NNNNNNNNNN .................................... TTTTATTCCAGAAACTCTTAAAAAAGTTGA 895629 36 100.0 30 NNNNNNNNNN .................................... CCTTGAGCACTTGAACGATGATTAAAATAC 895695 36 100.0 30 NNNNNNNNNN .................................... AAATGCAACTTGTTTTCAGCTGCAAATTTA 895761 36 100.0 30 NNNNNNNNNN .................................... GTAATGTTTGGAATTGTTAACTTGTCACTT 895827 36 100.0 30 NNNNNNNNNN .................................... GTTTAATGGTTATGACCAGATTTTGATACC 895893 36 100.0 30 NNNNNNNNNN .................................... CACTTTAACAACACAACAAACTGAGTTAGT 895959 36 100.0 30 NNNNNNNNNN .................................... AAAGTGAAACTTGAGTGAGCCAAGTTACTG 896025 36 100.0 30 NNNNNNNNNN .................................... GACCGAAAAAATATTACCCACGTTTGGTTT 896091 36 100.0 30 NNNNNNNNNN .................................... ATTAACGACACTAACGCAGTTGTAAAAATT 896157 36 100.0 30 NNNNNNNNNN .................................... AAATTACGATTTTTTATTCCCGAAACTTTT 896223 36 100.0 30 NNNNNNNNNN .................................... TGATTTGTGTAAGTAATACTTGTCGCGCTT 896289 36 100.0 30 NNNNNNNNNN .................................... CAGCGCTTGAAGTCGTTGAAAAGATCAATA 896355 36 100.0 30 NNNNNNNNNN .................................... TTAATGAACAAGACTATTTAGGTCTTTTAA 896421 36 100.0 30 NNNNNNNNNN .................................... AAATACTCGCAACTTTTTTAATGTTATAAG 896487 36 100.0 30 NNNNNNNNNN .................................... AAGATCACTAACCATCAAGTTCGTGTTAAT 896553 36 100.0 30 NNNNNNNNNN .................................... AAAAACGAAGAAAACTTAAATAAATTTATT 896619 36 100.0 30 NNNNNNNNNN .................................... CACACACCAAAGATAAGTCGTGACTAGCTC 896685 36 100.0 30 NNNNNNNNNN .................................... TAGTTGATAGTTATTTAGACTATTTTGCTG 896751 36 100.0 28 NNNNNNNNNN .................................... TGATCAGAGTTATGCAGAATCATTATCT 896815 36 100.0 29 NNNNNNNNNN .................................... ATCGGAATGTTTTTATTGTTGATCCTGAA 896880 36 100.0 30 NNNNNNNNNN .................................... TTTTTAAAGTTAATTTTAAAAAAATCTTAA 896946 36 100.0 30 NNNNNNNNNN .................................... AGACCTATAACCACAACTTACTATTTAGTT 897012 36 100.0 30 NNNNNNNNNN .................................... TTATTAATAAACCTCTCTAAATTTTGTGGT 897078 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 40 36 29 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.70,-2.60] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [81.7-85.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [23,84] Score: 0.18/0.18 # # Final direction: R [0,0.18 Confidence: MEDIUM] >NC_017516 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 1915793 25 100.0 43 NNNNNNNNNN ......................... CAGACCTTAGAACAACAGTAATATTCAAAGATTATAAAAGACC 1915861 25 100.0 47 NNNNNNNNNN ......................... TAGAACGTAAAATCTAAAGAAACCGTGTTGTAACGGCAGACCGATGC 1915933 25 100.0 1 NNNNNNNNNN ......................... NNNNNNNNNN ========== ====== ====== ====== ========== ========================= 3 25 45 CGTCATTCCCGCGCAGGCGGGAATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [4,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.70,-5.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [352,443] Score: 0/0.18 # # Final direction: F [0.37,0 Confidence: MEDIUM] >NC_017516 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 46768 24 100.0 54 NNNNNNNNNN ........................ CGGCTTGTTCGGTTTCGGTTTTTTTTTTTTGAGGTTTCGGGCAACTTCTAAACC 46846 24 100.0 44 NNNNNNNNNN ........................ TAGACCTTAGAACAACAGCAATATTCAAAGATTATAAAAGACCT 46914 24 100.0 1 NNNNNNNNNN ........................ NNNNNNNNNN ========== ====== ====== ====== ========== ======================== 3 24 49 GTCATTCCCGCGCAGGCGGGAATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [4,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.70,-5.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [1454,1264] Score: 0/0.18 # # Final direction: F [0.37,0 Confidence: MEDIUM] >NC_017522 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================== ====== 331850 21 100.0 24 NNNNNNNNNN ...G..TT.......TT.... CCGTTGCCGATCAGCACGGCGTTG 331895 21 100.0 29 NNNNNNNNNN ......A.A..A...CT.... CCGGTACCGGCGCCAAACCCGCCGGCAAC 331945 21 100.0 24 NNNNNNNNNN ..C.GT..A......TT.... AACACCCCGGCGTGGCCACCGTCA 331990 21 100.0 24 NNNNNNNNNN .......T........TA... GCGCCTAGAGCGTTGGCACCGCTG 332035 21 100.0 27 NNNNNNNNNN ..................... GCGGAGCCGAAGAGCAAGCCGCCGTTC 332083 21 100.0 36 NNNNNNNNNN ..................... CCTTGCTGGATGCTGGTAAGTGCTGCCCCGCCGTGC 332140 21 100.0 27 NNNNNNNNNN ..................... CCGAAGCCGAAGAGTAAGGCGCCGTTC 332188 21 100.0 27 NNNNNNNNNN .......T.........C... CCGGCCCCGCCGGCAAGGGAGCTGGCG 332236 21 100.0 33 NNNNNNNNNN ..A...CT............A CCGGAGGCGCCGAGGGAGAGTAGGCCGGCGTTG 332290 21 100.0 33 NNNNNNNNNN ......TGC......C..... GTGGTGATCCCGGACCCTCCCGAGCCGGCGGCG 332344 21 100.0 51 NNNNNNNNNN .......T.........T... AACAGTCCGCCGTTCCCGCCGTTCCCACCGGCCCCGAAGTTCGTGCCGGCC 332416 21 100.0 42 NNNNNNNNNN .......T......A.TT... AACAGTCCGCCGTTCCCGCCGTTCCCGCCGGCTGCGTTGAAC 332479 21 100.0 24 NNNNNNNNNN ........C..T.....T... CCGTTGGCGAACAGTCCGCCGTTG 332524 21 100.0 27 NNNNNNNNNN ...............A..... GCCGGGACACCGCCAGCGGCGCCGTGG 332572 21 100.0 21 NNNNNNNNNN .......T....G.C...... AAGAGCAAACCGGCGTCGCCG 332614 21 100.0 27 NNNNNNNNNN ....GCC.....G.CC..... ATGCCAGCGACGCCTATGGAGTTCCCA 332662 21 100.0 24 NNNNNNNNNN ...TT.C.....GT.C..... GAGCCGATCAGCAAGGAGACCCCA 332707 21 100.0 1 NNNNNNNNNN ...G..C.....G.CC..... NNNNNNNNNN ========== ====== ====== ====== ========== ===================== 18 21 29 CCGCCGGCGCCGCCGGCGCCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [,] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.40,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [19-28] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [20.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [446,813] Score: 0/0.18 # # Final direction: F [0.78,0.27 Confidence: MEDIUM] >NC_017522 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3106282 36 100.0 38 NNNNNNNNNN .................................... TCGGGCACGGCCGAAACACCGCGCGAAGGGCGGTTCAA 3106356 36 100.0 40 NNNNNNNNNN .................T.................. TGGGAGGATGTCACTCGGACATAGCTGTCATCGGCGGTGT 3106432 36 100.0 40 NNNNNNNNNN ................................G... ATGGAGCAGTAGCGTGGCTGTGGTGTGGCGGGCGATATGC 3106508 36 100.0 37 NNNNNNNNNN .................................... TGCTGCACCTCCCGCACCCGGTGCGATTCTGCGTCCA 3106581 36 100.0 36 NNNNNNNNNN .............................C...... CCCGATAGTCGCGCTCGTCCATGTCCCACCATGAGG 3106653 36 100.0 35 NNNNNNNNNN .................................... TACCTGATAGAAGCCGGAAAGCTCCGTGCCGTCAG 3106724 36 100.0 38 NNNNNNNNNN .................................... AGGGCACTGGACCTGTATGAGGCACAGATGGCGTACTA 3106798 36 100.0 40 NNNNNNNNNN .................................... CCGGATCGGTTACCCACGCCGATTTACTGGCCATCGTCGG 3106874 36 100.0 35 NNNNNNNNNN .................................... ACTTGCGCGCACAACGCATCCGCCATCCACGGGGC 3106945 36 100.0 37 NNNNNNNNNN .................................... CTGAAAGGGGGACTGTGGACGAGTTCGCGCTCAAAAT 3107018 36 100.0 38 NNNNNNNNNN .................................... GCGAGAATAAGATTGTCAGGCTGGTGCTGCGTTTCCGT 3107092 36 100.0 38 NNNNNNNNNN .................................... ACTCTCAACCGCGCCACGCTCAAAAAAAGTGTTATTGA 3107166 36 100.0 36 NNNNNNNNNN .................................... CCGCTGGGGGCAGGCCCAGGTGGGACGGTTCCTCGC 3107238 36 100.0 43 NNNNNNNNNN .................................... TTCGGGAGCATGCCGCAGCTGCGGATGTGGTGCTGGATTTCGA 3107317 36 100.0 41 NNNNNNNNNN .................................... ACGTTGGAAGCGTTTCGAGCGTACGGACTTTCCGGATGCAG 3107394 36 100.0 1 NNNNNNNNNN ................T.AACCGCCCCGGCATGTC. NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 16 36 38 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [3-18] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [38.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [150,33] Score: 0.18/0.18 # # Final direction: R [0.59,1.01 Confidence: LOW] >NC_017522 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 3941696 31 100.0 104 NNNNNNNNNN .............AG.G.C...AG....... GGCCGGCGGAGCGGCCGGCACCGGAGGCACCGGCGGCATGATCGGCACCACAGGCAACGCCGGTGTCGGCGGGGCCGGCGGTAGCAGCGGTGCCGGCGGCACCA 3941831 31 100.0 83 NNNNNNNNNN A....T........G................ ACAAGGCGGCGCCGGGGGTGCTGGCGGGGCCGGCGCCGATAACCCCACCGGCATCGGCGGCACCGGCGGTGACGGCGGCACCG 3941945 31 100.0 77 NNNNNNNNNN ....AG.G.C...AG.......GG....... AGCGGCCGGCACCGGAGGCACCGGCGGCATGATCGGCACCACAGGCAACGCCGGTGTCGGCGGGGCCGGCGGCCAAG 3942053 31 100.0 80 NNNNNNNNNN ....TGA......AG.......GG......C CGACGCCGACCAGCCCGGCGCCACCGGCGGCACCGGGTTCGCCGGTGGAGCCGGCGGGGCCGGCGGGTCCGGCGGTAGCA 3942164 31 100.0 59 NNNNNNNNNN ....TG...........AA....T....... CGCCGGCGGCACCGGCGGACAAGGCGGCGCCGGGGGTGCTGGCATCAGCTTCAGCAACG 3942254 31 100.0 62 NNNNNNNNNN ..A...A.....................G.. CGTGGGCGGCACCGGGGGCGACGGCGGCAACGCAGGCACCGGCGCCGGCGGCCCCGGCAAAG 3942347 31 100.0 41 NNNNNNNNNN ............................... CAGCGGCGGGGCCGGCGGTAGCGGCGGGGCCAACTTCAACG 3942419 31 100.0 41 NNNNNNNNNN ............................... CAAAGGCGGCCTAAACACCGACGGACTCAGCAGCGCCACCA 3942491 31 100.0 38 NNNNNNNNNN ............................... CAAAGGCGGCACCGGCGGGGCCGGCGACGACTCCGCCG 3942560 31 100.0 59 NNNNNNNNNN ....G...........A.....GG....... CAACGCCGGCGCCGGCGGCCTAGCCAACACCGGCGGCACCGCAGGCAACGCGGGCATCG 3942650 31 100.0 47 NNNNNNNNNN ....TGA.......CAA.....T.A...... CCAAGGAGACAGCGGTTCCGGATTGGGCGGCCAGCCCGGCTTTGCCG 3942728 31 100.0 41 NNNNNNNNNN ....GG.........AA.....GG....... TAGCAGCGGTGCCGGCGGCACCAACGGCTCCGGCGGCGCCG 3942800 31 100.0 41 NNNNNNNNNN ....GG.......ACAA......G....G.. TGCTGGCATCAGCTTCAGCAACGGCAGCAACGGCGGCACCG 3942872 31 100.0 44 NNNNNNNNNN ..........G...GTG...........G.. CGACGGCGGCAACGCAGGCACCGGCGCCGGCGACCCCGGCAAAG 3942947 31 100.0 41 NNNNNNNNNN ............................... CAGCGGCGGGGCCGGCGGTAGCGGCGGGGCCAACTTCAACG 3943019 31 100.0 23 NNNNNNNNNN ............................... CACCGGCGGCAAAGGCGGCATGG 3943073 31 100.0 41 NNNNNNNNNN ......T..CT...GA......GC....... TGACGGCGGCAACGCCGGGGTCGGAGGAAAAGGCGGCACCA 3943145 31 100.0 59 NNNNNNNNNN A.....A........G......G........ CACAGGCGGGGCCGGCGGCAACGCCGGCGCCGGCGGCCTAGCCAACACCGGCGGCACCG 3943235 31 100.0 1 NNNNNNNNNN CA....A..CG....T......TGA...... NNNNNNNNNN ========== ====== ====== ====== ========== =============================== 19 31 54 GCGGCACCGGCGGCACCGGCGGCACCGGCGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [3,] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [33-39] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [20.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [2277,1364] Score: 0/0.18 # # Final direction: F [0.78,0.64 Confidence: LOW] >NC_017523 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3099883 36 100.0 38 NNNNNNNNNN .................................... TCGGGCACGGCCGAAACACCGCGCGAAGGGCGGTTCAA 3099957 36 100.0 40 NNNNNNNNNN .................T.................. TGGGAGGATGTCACTCGGACATAGCTGTCATCGGCGGTGT 3100033 36 100.0 40 NNNNNNNNNN ................................G... ATGGAGCAGTAGCGTGGCTGTGGTGTGGCGGGCGATATGC 3100109 36 100.0 37 NNNNNNNNNN .................................... TGCTGCACCTCCCGCACCCGGTGCGATTCTGCGTCCA 3100182 36 100.0 36 NNNNNNNNNN .............................C...... CCCGATAGTCGCGCTCGTCCATGTCCCACCATGAGG 3100254 36 100.0 35 NNNNNNNNNN .................................... TACCTGATAGAAGCCGGAAAGCTCCGTGCCGTCAG 3100325 36 100.0 38 NNNNNNNNNN .................................... AGGGCACTGGACCTGTATGAGGCACAGATGGCGTACTA 3100399 36 100.0 40 NNNNNNNNNN .................................... CCGGATCGGTTACCCACGCCGATTTACTGGCCATCGTCGG 3100475 36 100.0 35 NNNNNNNNNN .................................... ACTTGCGCGCACAACGCATCCGCCATCCACGGGGC 3100546 36 100.0 37 NNNNNNNNNN .................................... CTGAAAGGGGGACTGTGGACGAGTTCGCGCTCAAAAT 3100619 36 100.0 38 NNNNNNNNNN .................................... GCGAGAATAAGATTGTCAGGCTGGTGCTGCGTTTCCGT 3100693 36 100.0 38 NNNNNNNNNN .................................... ACTCTCAACCGCGCCACGCTCAAAAAAAGTGTTATTGA 3100767 36 100.0 36 NNNNNNNNNN .................................... CCGCTGGGGGCAGGCCCAGGTGGGACGGTTCCTCGC 3100839 36 100.0 43 NNNNNNNNNN .................................... TTCGGGAGCATGCCGCAGCTGCGGATGTGGTGCTGGATTTCGA 3100918 36 100.0 41 NNNNNNNNNN .................................... ACGTTGGAAGCGTTTCGAGCGTACGGACTTTCCGGATGCAG 3100995 36 100.0 1 NNNNNNNNNN ................T.AACCGCCCCGGCATGTC. NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 16 36 38 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [3-18] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [38.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [150,33] Score: 0.18/0.18 # # Final direction: R [0.59,1.01 Confidence: LOW] >NC_017523 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 3934842 32 100.0 76 NNNNNNNNNN ....AG.G.C...AG.......GG.......A GCGGCCGGCACCGGAGGCACCGGCGGCATGATCGGCACCACAGGCAACGCCGGTGTCGGCGGGGCCGGCGGCCAAG 3934950 32 100.0 79 NNNNNNNNNN ....TGA......AG.......GG......C. GACGCCGACCAGCCCGGCGCCACCGGCGGCACCGGGTTCGCCGGTGGAGCCGGCGGGGCCGGCGGGGCCGGCGGTAGCA 3935061 32 100.0 58 NNNNNNNNNN ....TG...........AA....T........ GCCGGCGGCACCGGCGGACAAGGCGGCGCCGGGGGTGCTGGCATCAGCTTCAGCAACG 3935151 32 100.0 61 NNNNNNNNNN ..A...A.....................G... GTGGGCGGCACCGGGGGCGACGGCGGCAACGCAGGCACCGGCGCCGGCGACCCCGGCAAAG 3935244 32 100.0 40 NNNNNNNNNN ................................ AGCGGCGGGGCCGGCGGTAGCGGCGGGGCCAACTTCAACG 3935316 32 100.0 40 NNNNNNNNNN ................................ AAAGGCGGCCTAAACACCGACGGACTCAGCAGCGCCACCA 3935388 32 100.0 37 NNNNNNNNNN ................................ AAAGGCGGCACCGGCGGGGCCGGCGACGACTCCGCCG 3935457 32 100.0 58 NNNNNNNNNN ....G...........A.....GG........ AACGCCGGCGCCGGCGGCCTAGCCAACACCGGCGGCACCGCAGGCAACGCGGGCATCG 3935547 32 100.0 46 NNNNNNNNNN ....TGA.......CAA.....T.A....... CAAGGAGACAGCGGTTCCGGATTGGGCGGCCAGCCCGGCTTTGCCG 3935625 32 100.0 40 NNNNNNNNNN ....GG.........AA.....GG.......T AGCAGCGGTGCCGGCGGCACCAACGGCTCCGGCGGCGCCG 3935697 32 100.0 40 NNNNNNNNNN ....GG.......ACAA......G....G..T GCTGGCATCAGCTTCAGCAACGGCAGCAACGGCGGCACCG 3935769 32 100.0 43 NNNNNNNNNN ..........G...GTG...........G... GACGGCGGCAACGCAGGCACCGGCGCCGGCGACCCCGGCAAAG 3935844 32 100.0 40 NNNNNNNNNN ................................ AGCGGCGGGGCCGGCGGTAGCGGCGGGGCCAACTTCAACG 3935916 32 100.0 22 NNNNNNNNNN ................................ ACCGGCGGCAAAGGCGGCATGG 3935970 32 100.0 40 NNNNNNNNNN ......T..CT...GA......GC.......T GACGGCGGCAACGCCGGGGTCGGAGGAAAAGGCGGCACCA 3936042 32 100.0 58 NNNNNNNNNN A.....A........G......G......... ACAGGCGGGGCCGGCGGCAACGCCGGCGCCGGCGGCCTAGCCAACACCGGCGGCACCG 3936132 32 100.0 1 NNNNNNNNNN CA....A..CG....T......TGA....... NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 17 32 48 GCGGCACCGGCGGCACCGGCGGCACCGGCGGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [3,] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.80,-9.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [25-35] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [18.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [2526,1363] Score: 0/0.18 # # Final direction: F [0.78,0.64 Confidence: LOW] >NC_017524 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3114245 36 100.0 38 NNNNNNNNNN .................................... TCGGGCACGGCCGAAACACCGCGCGAAGGGCGGTTCAA 3114319 36 100.0 40 NNNNNNNNNN .................T.................. TGGGAGGATGTCACTCGGACATAGCTGTCATCGGCGGTGT 3114395 36 100.0 40 NNNNNNNNNN ................................G... ATGGAGCAGTAGCGTGGCTGTGGTGTGGCGGGCGATATGC 3114471 36 100.0 37 NNNNNNNNNN .................................... TGCTGCACCTCCCGCACCCGGTGCGATTCTGCGTCCA 3114544 36 100.0 36 NNNNNNNNNN .............................C...... CCCGATAGTCGCGCTCGTCCATGTCCCACCATGAGG 3114616 36 100.0 35 NNNNNNNNNN .................................... TACCTGATAGAAGCCGGAAAGCTCCGTGCCGTCAG 3114687 36 100.0 38 NNNNNNNNNN .................................... AGGGCACTGGACCTGTATGAGGCACAGATGGCGTACTA 3114761 36 100.0 40 NNNNNNNNNN .................................... CCGGATCGGTTACCCACGCCGATTTACTGGCCATCGTCGG 3114837 36 100.0 35 NNNNNNNNNN .................................... ACTTGCGCGCACAACGCATCCGCCATCCACGGGGC 3114908 36 100.0 37 NNNNNNNNNN .................................... CTGAAAGGGGGACTGTGGACGAGTTCGCGCTCAAAAT 3114981 36 100.0 38 NNNNNNNNNN .................................... TTGAACACGCCGATACCTATTTGGTCGGGAGTGATAAA 3115055 36 100.0 37 NNNNNNNNNN .................................... CGGACTTGATCGACGCGAACCTGTCTGACGCGAACCT 3115128 36 100.0 37 NNNNNNNNNN .................................... GGCTGGAAAAGGGCGCGGGGCAACCGCATCGTCAAGA 3115201 36 100.0 36 NNNNNNNNNN .................................... GCGTTGTGGTCGTGTCGTGGAGCCTGTATTTCGCTG 3115273 36 100.0 36 NNNNNNNNNN .................................... CATTAGTTGGTGTTGTGATCGCTAAACGCCGGGGCA 3115345 36 100.0 38 NNNNNNNNNN .................................... CTATCCGCGGGAAGAGATCACGAATCCGGCGTCGAAGG 3115419 36 100.0 38 NNNNNNNNNN .................................... ATGCTGAGCTGAGGCGCCGGATGATGGTGGTGCTGAAG 3115493 36 100.0 35 NNNNNNNNNN .................................... TGACAGGGTGCGGTGGTCGCTGATCGGCTCCCCGA 3115564 36 100.0 1 NNNNNNNNNN .....................GAACC.C.CCGGTGA NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 19 36 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [3-13] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [38.3-38.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [150,28] Score: 0.18/0.18 # # Final direction: R [0.59,0.74 Confidence: LOW] >NC_017524 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 3117113 35 100.0 37 GCGCAATCCA ................................... CCTCCCGGACCATCTGCAGCTCGCCCGGGTCCATGCG 3117185 35 100.0 38 GGTCCATGCG ................................... CCGGAGTCATCCGCGCGGGCCGGCGCGATTGTTGCCGG 3117258 35 100.0 37 TTGTTGCCGG ................................... CTGGCGATTTACGACGCTGACGGGAACTCGTGCGAAT 3117330 35 91.4 TCGTGCGAAT ................................--- TCCGCGAAATTCACTGCGCGTTATTCAAG ========== ====== ====== ====== ========== =================================== 4 35 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [227,95] Score: 0.18/0.18 # # Final direction: R [0.59,0.74 Confidence: LOW] >NC_017527 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1830362 36 100.0 37 NNNNNNNNNN .................................... AACCGTAACCAGGCTCCCCTAGAGTAGTGCTTTTCTT 1830435 36 100.0 37 NNNNNNNNNN .................................... TTTTAAGCGGGTTTGGAATTCGGCGATTGGTTTTCTT 1830508 36 100.0 36 NNNNNNNNNN .................................... AGCTCCAATTCAGCGAAACGGCATCGGTGCCAACGG 1830580 36 100.0 40 NNNNNNNNNN .................................... TTTGCGCTGACAAGATCTTTGTCGAAGGGTATATCGTTAA 1830656 36 100.0 37 NNNNNNNNNN .................................... ATTATTTGAAGAAATCGAAAAAATTTCAGAGAAAGAA 1830729 36 100.0 37 NNNNNNNNNN .................................... TATAGACGATTCCGCCTACTATGATCAACATTGTTGC 1830802 36 100.0 37 NNNNNNNNNN .................................... TCATTTTCCCTAACTTCTCTACCACGATTAGGGGGTA 1830875 36 100.0 40 NNNNNNNNNN .................................... AGCCATAGCCTCCTGATGACCTTCCGGCCCCAGACCTTAT 1830951 36 100.0 43 NNNNNNNNNN .................................... ACCTCCGTTCCGGTTGCAAGATGTCCATCGATGTCTTCCCCAG 1831030 36 100.0 39 NNNNNNNNNN .................................... GATAGAAGAGGTAGATCGAAGCCCCCTTCATTGCTGACT 1831105 36 100.0 37 NNNNNNNNNN ...................GCGT.G...CA.TG..A CTTGTCAACGGTGAACAACTGGGGGGTACCGCTGAGC 1831178 36 100.0 35 NNNNNNNNNN .................................... ATCTACTGAAAATTCAAAAGATGCGTTATAGTTCA 1831249 36 100.0 37 NNNNNNNNNN .................................... CGAGAGGGCGGCTCGGCCCAAACCCGCTGAATCGGTC 1831322 36 100.0 42 NNNNNNNNNN .................................... ATGGGGGCGTCCAGGTTGGCGAGGTCGCCGGGTTTCGCGGCC 1831400 36 100.0 43 NNNNNNNNNN .................................... TGCGATCTCGGCACGGTATTCATCTACCTTATCTGGGAAGTTG 1831479 36 100.0 36 NNNNNNNNNN .................................... GCCGCAACAAATTCCTCTGCCGCGACCAAGACGGGC 1831551 36 100.0 40 NNNNNNNNNN .................................... CATAGCGTCATCCTCCTATGGATTGCCGGAATCGTTCCGG 1831627 36 100.0 39 NNNNNNNNNN .................................... TTACAAAACCGTGCCCGCGTTGGTTATACAACGCTTCTC 1831702 36 100.0 37 NNNNNNNNNN .................................... CATTATTTCGCTCCTCAATCTCTCTCGTACGATCAAC 1831775 36 100.0 40 NNNNNNNNNN .................................... TCCCTAACACATGGAGATCTATCTTGCTGAACATTTCGGC 1831851 36 100.0 39 NNNNNNNNNN .................................... TCAAAACAGCAAGACTATAGATGATCATAGCTGTCCTCG 1831926 36 100.0 37 NNNNNNNNNN .................................... CGGTCGACGCCGGCCGGAGGATGATCATCTCGACGGA 1831999 36 100.0 44 NNNNNNNNNN .................................... ACGATCACCCAGACCTGCGAGGGAGGGCCCCGGGGAGGGACGGC 1832079 36 100.0 35 NNNNNNNNNN .................................... GAAAATAATGGCTTTAGCTTCTTCTAGAACATCCT 1832150 36 100.0 37 NNNNNNNNNN .................................... AGAGTGGATATTTTGATTGCTTAGAACCAAACCGGAA 1832223 36 100.0 36 NNNNNNNNNN .................................... TTATCATCCTGAACATCGTCCAGCATGACCACTATC 1832295 36 100.0 36 NNNNNNNNNN .................................... GTCATCAGACGTCAGCCCCTCCTGTTTTAAGTTCTT 1832367 36 100.0 40 NNNNNNNNNN .................................... ATCTCTAATCTTGAGCAAGCCCGCGCTGACGAGACCTTCA 1832443 36 100.0 37 NNNNNNNNNN .................................... TGTTTCGGGCTTCCCTAAGGAGGCCGTCAGCATATTC 1832516 36 100.0 43 NNNNNNNNNN .................................... GCCAACCCGACTATCTTATCCAGCATCGCTTTTTCAAGATCGC 1832595 36 100.0 43 NNNNNNNNNN .................................... ATAGTAGCGTGCCCCGTGAGCGCGCAGGATAAAGTTGGTGGCG 1832674 36 100.0 39 NNNNNNNNNN .................................... GTTTACCTTTGGAACCCATATCTTTTGCCAATATTCTTC 1832749 36 100.0 41 NNNNNNNNNN .................................... AGGAAGTCCAACACAAACTGAATAACCTGTGCGTCTGTGAG 1832826 36 100.0 39 NNNNNNNNNN .................................... GGGCGGCCATCAGGCGCAACCCTCAACGCAGATACTTAA 1832901 36 100.0 36 NNNNNNNNNN .................................... CGCACGTATTGAAAAGAAGGTAAACAAGGAGAGAAG 1832973 36 100.0 36 NNNNNNNNNN .................................... ACAAGGGCGATGTCTTCAACCTTGCCGGGCAGATGC 1833045 36 100.0 37 NNNNNNNNNN .................................... GATAAAGGCGCCACAACAATGATATCATCATAATGAC 1833118 36 100.0 38 NNNNNNNNNN .................................... TTGATATAGGATGCCGAAATATGACGCAGTGAGCACTA 1833192 36 100.0 39 NNNNNNNNNN G................................... GAATTGGAGCCTATCCATCCCAAATGGATACCAGGTTTG 1833267 36 100.0 1 NNNNNNNNNN G.............................C..G.. NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 40 36 38 CTATCCATGGCTGAAAAGTCGTGGCCCCATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [10,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [10-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [51.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [336,67] Score: 0.18/0.18 # # Final direction: F [5.69,0.41 Confidence: HIGH] >NC_017524 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3118826 36 100.0 36 GTTGGCGCAA .................................... ACGTGGGGAGAGGGAATGGCAATGATGGTCGACGAA 3118898 36 100.0 40 GGTCGACGAA .................................... CTCGGACAGCATCTCCCCGGGCGGGCAGCAGATATCCCAT 3118974 36 100.0 41 GATATCCCAT .................................... CGACCCGTGGCCGCCAGGTTGCCGCCGCCGTTGCTCACCTG 3119051 36 100.0 37 TGCTCACCTG .................................... CCGGAAGTCAACTAGAGCGGGTGTCGAACGCTGCCCG 3119124 36 100.0 35 ACGCTGCCCG .................................... ATGCGAATCCGCTGTCAGCACATGGGATTCCGAGT 3119195 36 100.0 37 GATTCCGAGT .................................... CTAGGCGGCCCCGGCGAGGCTGGGGGCGGTTTCACGC 3119268 36 100.0 38 GGTTTCACGC .................................... CAGCGCAGACGGCAGCCCCGAGTACTCGCTCTCCTCAG 3119342 36 100.0 37 CTCTCCTCAG .................................... AGGCTGAAATTGAAGCCGGAAATGACGACGCATTGGT 3119415 36 100.0 35 ACGCATTGGT .................................... CTAAGCCCGCTAATCCCGCACAAGTGGTCAGAAAA 3119486 36 100.0 39 GGTCAGAAAA .................................... CTGATGATTGGTCGGCGTATGACGTGCTACTGAGGTGTT 3119561 36 100.0 34 CTGAGGTGTT .................................... TAGAAGGCGATCACTGGAAGCACGGCGCTTGCGA 3119631 36 100.0 36 GCGCTTGCGA .................................... TTGGTCAAAAGCTGTCGCCCAAGCATGAGGCAAAAA 3119703 36 100.0 41 GAGGCAAAAA .................................... ACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTATG 3119780 36 100.0 38 ACCCTCTATG .................................... GTGCAAGAATTCCGGGTTGCAGTGCAACACGGTTTTAA 3119854 36 100.0 ACGGTTTTAA .................................... TCTATGGACA ========== ====== ====== ====== ========== ==================================== 15 36 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [38.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [108,50] Score: 0.18/0.18 # # Final direction: R [0.18,1.01 Confidence: HIGH] >NC_017528 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3113271 36 100.0 38 NNNNNNNNNN .................................... TCGGGCACGGCCGAAACACCGCGCGAAGGGCGGTTCAA 3113345 36 100.0 40 NNNNNNNNNN .................T.................. TGGGAGGATGTCACTCGGACATAGCTGTCATCGGCGGTGT 3113421 36 100.0 40 NNNNNNNNNN ................................G... ATGGAGCAGTAGCGTGGCTGTGGTGTGGCGGGCGATATGC 3113497 36 100.0 37 NNNNNNNNNN .................................... TGCTGCACCTCCCGCACCCGGTGCGATTCTGCGTCCA 3113570 36 100.0 36 NNNNNNNNNN .................................... CCCGATAGTCGCGCTCGTCCATGTCCCACCATGAGG 3113642 36 100.0 35 NNNNNNNNNN .................................... TACTGATAGAAGCCGGAAAGCGCCGTGCCGTCAGG 3113713 36 100.0 39 NNNNNNNNNN T..C.GTC...TCTCG...T................ GTATGAGGCACAGATGGCGTACTAGTTTCCGCGTGCGAG 3113788 36 100.0 40 NNNNNNNNNN .................................... CCGGATCGGTTACCCACGCCGATTTACTGGCCATCGTCGG 3113864 36 100.0 35 NNNNNNNNNN .................................... ACTTGCGCGCACAACGCATCCGCCATCCACGGGGC 3113935 36 100.0 37 NNNNNNNNNN .................................... CTGAAAGGGGGACTGTGGACGAGTTCGCGCTCAAAAT 3114008 36 100.0 38 NNNNNNNNNN ........................A........... GTGGTCGGGAGTGATAAAGTTTCCGTCCCCTCTCGGGG 3114082 36 100.0 37 NNNNNNNNNN T...GG.............................. CGGACTTGATCGACGCGAACCTGTCTGACGCGAACCT 3114155 36 100.0 37 NNNNNNNNNN .................................... GGCTGGAAAAGGGCGCGGGGCAACCGCATCGTCAAGA 3114228 36 100.0 36 NNNNNNNNNN .................................... GCGTTGTGGTCGTGTCGTGGAGCCTGTATTTCGCGA 3114300 36 100.0 36 NNNNNNNNNN .................................... CATTAGTTGGTGTTGTGATCGCTAAACGCCGGGGCA 3114372 36 100.0 38 NNNNNNNNNN .................................... CTATCCGCGGGAAGAGATCACGAATCCGGCGTCGAAGG 3114446 36 100.0 38 NNNNNNNNNN .................................... ATGCTGAGCTGAGGCGCCGGATGATGGTGGTGCTGAAG 3114520 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 18 36 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [38.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [150,109] Score: 0/0.18 # # Final direction: R [0.68,0.74 Confidence: LOW] >NC_017529 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 543351 29 100.0 34 AAGTTAGCGG ............................. TTTCCCCAACTGCGCCCTGTTTTAATTGCTTAAC 543414 29 100.0 37 ATTGCTTAAC ............................. ATATACTGGCAAGTTTATCTTGATGTTTCTGACTATC 543480 29 100.0 35 TCTGACTATC ............................. CGTATATTTAATTTTCGGCATATAATCCCATCAAT 543544 29 100.0 37 TCCCATCAAT ............................. CTGTTCATTTATTTTTCAGTCCTATGTTCATTGCCTC 543610 29 100.0 36 TCATTGCCTC ............................. CCGGAAGATTTAGCAGTGGATCCATTTCCGTTTGAA 543675 29 100.0 TCCGTTTGAA ............................. AATCGTCACG ========== ====== ====== ====== ========== ============================= 6 29 35 GTTTTAGTTACTTAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [238,144] Score: 0/0.18 # # Final direction: F [0.37,0 Confidence: MEDIUM] >NC_017528 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================== ====== 333820 21 100.0 24 NNNNNNNNNN ...G..TT.......TT.... CCGTTGCCGATCAGCACGGCGTTG 333865 21 100.0 28 NNNNNNNNNN ......A.A..A...CT.... CCGGTACCGGCGCCAAACCCGCCGGCAA 333914 21 100.0 24 NNNNNNNNNN ..C...T.A......TT.... AACACCCCGGCGTGGCCACCGTCA 333959 21 100.0 24 NNNNNNNNNN .......T........TA... GCGCCTAGAGCGTTGGCACCGCTG 334004 21 100.0 27 NNNNNNNNNN ..................... GCGGAGCCGAAGAGCAAGCCGCCGTTC 334052 21 100.0 36 NNNNNNNNNN ..................... CCTTGCTGGATGCTGGTAAGTGCTGCCCCGCCGTGC 334109 21 100.0 27 NNNNNNNNNN ..................... CCGAAGCCGAAGAGTAAGGCGCCGTTC 334157 21 100.0 27 NNNNNNNNNN .......TT........C... CCGGCAAGGGAGCTGGCGCCACCGCTG 334205 21 100.0 24 NNNNNNNNNN ...........A....A.G.. CCGAGGGAGAGTAGGCCGGCGTTG 334250 21 100.0 33 NNNNNNNNNN ......TGC......C..... GTGGTGATCCCGGACCCTCCCGAGCCGGCGGCG 334304 21 100.0 51 NNNNNNNNNN .......T.........T... AACAGTCCGCCGTTCCCGCCGTTCCCACCGGCCCCGAAGTTCGTGCCGGCC 334376 21 100.0 50 NNNNNNNNNN .......T......A.TT... AACAGTCCGCCGTTCCCGCCGTTCCCGCCGGCTGCGTTGAACCCGCCGGC 334447 21 100.0 45 NNNNNNNNNN ..T.....T......TT.G.. AACAGTCCGCCGTTGCCGCCGGCGCCGCCGACGCCGGCCGGGACA 334513 21 100.0 27 NNNNNNNNNN .....A...G.....TG.... CCGGTGCCGGCCGCGCCGAAGAGCAAA 334561 21 100.0 36 NNNNNNNNNN ...G..T........CGC... CCGGCCCCGCCGATGCCAGCGACGCCTATGGAGTTC 334618 21 100.0 24 NNNNNNNNNN ..A...TT........T.... CCGGAGCCGATCAGCAAGGAGACC 334663 21 100.0 1 NNNNNNNNNN ..A..............C... NNNNNNNNNN ========== ====== ====== ====== ========== ===================== 17 21 31 CCGCCGGCGCCGCCGGCGCCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [,] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.40,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [18-26] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [20.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [249,2113] Score: 0.18/0.18 # # Final direction: F [0.78,0.45 Confidence: LOW] >NC_017528 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3115959 36 100.0 40 NNNNNNNNNN CA.G...GGG.GGT..A................... TCGCGGCGAGCACGTCTCACCCAGCAGGCGGTGAGGTTGG 3116035 36 100.0 39 NNNNNNNNNN .................................... ACGGACGAGCTGGACCGCATCAGCGATGCTGAGCTGAGG 3116110 36 100.0 38 NNNNNNNNNN .................................... TTGTCTCAAGTCGTGCCGTCTGCGGTGACACGCTCCAA 3116184 36 100.0 32 NNNNNNNNNN .................................... CTCGACGGCGCCAAGCCAGTTAGCGCAATCCA 3116252 36 100.0 38 NNNNNNNNNN .................................... CTCCGTCCCGGACCATCTGCAGCTCGCCGGTCCATGCG 3116326 36 100.0 37 NNNNNNNNNN .................................... CGGAGTCATCCGCGCGGGCCGGCGCGATTGTTGCCGG 3116399 36 100.0 37 NNNNNNNNNN .................................... TGGCGATTTACGACGCTGACGGGAACTCGTCGCGAAT 3116472 36 100.0 24 NNNNNNNNNN ...................T...G..TCTGAT.CG. GAAATTCACTGCGCGTTATTCAAG 3116532 36 100.0 41 NNNNNNNNNN .................................... CCGAGCCGACCATCCGCATCACACCGAAAGGGTTGGCGCAA 3116609 36 100.0 23 NNNNNNNNNN ...........................CTGA.GAGG GAATGGCAATGATGGTCGACGAA 3116668 36 100.0 40 NNNNNNNNNN .................................... CTCGGACAGCATCTCCCCGGGCGGGCAGCAGATATCCCAT 3116744 36 100.0 41 NNNNNNNNNN .................................... CGACCCGTGGCCGCCAGGTTGCCGCCGCCGTTGCTCACCTG 3116821 36 100.0 49 NNNNNNNNNN .................................... CCGGAAGTCAACTAGAGCGGGTGTCGAACGCTGCCCGGTTTCCGTCCAA 3116906 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 14 36 36 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [10-8] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [46.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [36,781] Score: 0.18/0.18 # # Final direction: R [0.27,1.33 Confidence: HIGH] >NC_017531 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 3224041 23 100.0 19 NNNNNNNNNN ....................... AGCTTTGGGTTTGGGTTTG 3224083 23 100.0 31 NNNNNNNNNN ....................... AGCTTTGGGTTTGGGTTTGGATTGAGGTTTG 3224137 23 100.0 1 NNNNNNNNNN ....................... NNNNNNNNNN ========== ====== ====== ====== ========== ======================= 3 23 25 GGTTGAGGGTTGAATTCGGATTG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.17%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [55.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [523,558] Score: 0/0.18 # # Final direction: F [0.27,0 Confidence: MEDIUM] >NC_017529 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 559382 29 100.0 34 NNNNNNNNNN ............................. TTTTTTTGGCTTTTTCTTTAGACACTTTTAACTT 559445 29 100.0 35 NNNNNNNNNN ............................. TTGTTTGGAAAACGTGCGCGCCAGCCTTCTTTTTT 559509 29 100.0 36 NNNNNNNNNN ............................. TGTATTCTTATAATGAGCTTTGCAAAATGGTTCCCC 559574 29 100.0 37 NNNNNNNNNN ............................. TCACCAATTCATGTCCTACTAGCTTCGGACGTTTCAT 559640 29 100.0 35 NNNNNNNNNN ............................. ACGGTTGAATAAAACGAATAATAAACTGCATGTAT 559704 29 100.0 34 NNNNNNNNNN ............................. AAGCTAGTCGCGAACAATTAAGCGCGTTAGCCCC 559767 29 100.0 36 NNNNNNNNNN ............................. CAACGCTTTTTATTGATATGATACTATATGACATTA 559832 29 100.0 37 NNNNNNNNNN ............................. TGCTTCTTGCTGTTCTTTCTCTTTTTTAAGATTTCAT 559898 29 100.0 36 NNNNNNNNNN ............................. GTCTTTTAGCCTGCTTTTGGTTAAAGTGGGGTTGTC 559963 29 100.0 36 NNNNNNNNNN ............................. TACTTAGCACCTACAAGACTAGCATCACCCTGCGCA 560028 29 100.0 37 NNNNNNNNNN ............................. ATCTACAGAACTCTCCGACTCTTGCACTTCCGTGATA 560094 29 100.0 37 NNNNNNNNNN ............................. ATTGGACCGGAAACTGCAGGCGACTTACTTAATTATC 560160 29 100.0 37 NNNNNNNNNN ............................. ACAGTCAAATGATGATGACCAACTTCCTCTGCCAAAG 560226 29 100.0 38 NNNNNNNNNN ............................. TACATTAGTGTATCGAAATCCGTATCGAAAATTTCTAC 560293 29 100.0 36 NNNNNNNNNN ............................. AAAATTGATCATCAGGTAAACTAGCAACATCAAGTT 560358 29 100.0 36 NNNNNNNNNN ............................. GGAAACGCCGTCTTCCGTCGTTCTAAATTTAAAACT 560423 29 100.0 34 NNNNNNNNNN ............................. TATAAATTAAGGATAAGGAGTGTTTTTGGATGGC 560486 29 100.0 35 NNNNNNNNNN ............................. CTTTCTGGAGCAACTTTTAAAGTGAAAGACAGTGA 560550 29 100.0 36 NNNNNNNNNN ............................. TATCTTTATCTGTAGCTAGTTTGAAATCATCTTCAT 560615 29 100.0 37 NNNNNNNNNN ............................. GAAAGTAAAGAAATCAAGCCTAAATTTGTTTTCCGGT 560681 29 100.0 36 NNNNNNNNNN ............................. GGTTTTAACTTCTAGGTTATTTTGTGCATTTTTTGG 560746 29 100.0 34 NNNNNNNNNN ............................. TATTCTTTTAAAGTTGGCGGTAGTATGGTAACTA 560809 29 100.0 36 NNNNNNNNNN ............................. ATGTCTGCGTGCCCCAGTCTCTCTTGGATTACTTTG 560874 29 100.0 36 NNNNNNNNNN ............................. TTTTCAATGTGCGAGTATGCTCCTCTGGAAATTCCT 560939 29 100.0 37 NNNNNNNNNN ............................. ATCTTGAACCGCTCCCCATGCTTTTTTAGCGCCATCA 561005 29 100.0 35 NNNNNNNNNN ............................. TAACAATGAAAAACGGATTTACAAAATTAGCGTCC 561069 29 100.0 36 NNNNNNNNNN ............................. ACTAACAAAGCACCTGTAAAAGCTAATGCAATCGGA 561134 29 100.0 1 NNNNNNNNNN .......................CAT..A NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 28 29 35 GTTTTAACTACTTATTATGAAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:82.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [56.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [199,74] Score: 0.18/0.18 # # Final direction: F [0.59,0.27 Confidence: MEDIUM] >NC_017537 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 541639 29 100.0 34 AAGTTAGCGG ............................. TTTCCCCAACTGCGCCCTGTTTTAATTGCTTAAC 541702 29 100.0 37 ATTGCTTAAC ............................. ATATACTGGCAAGTTTATCTTGATGTTTCTGACTATC 541768 29 100.0 35 TCTGACTATC ............................. CGTATATTTAATTTTCGGCATATAATCCCATCAAT 541832 29 100.0 37 TCCCATCAAT ............................. CTGTTCATTTATTTTTCAGTCCTATGTTCATTGCCTC 541898 29 100.0 36 TCATTGCCTC ............................. CCGGAAGATTTAGCAGTGGATCCATTTCCGTTTGAA 541963 29 100.0 TCCGTTTGAA ............................. AATCGTCACG ========== ====== ====== ====== ========== ============================= 6 29 35 GTTTTAGTTACTTAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [238,144] Score: 0/0.18 # # Final direction: F [0.37,0 Confidence: MEDIUM] >NC_017537 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 557670 29 100.0 34 NNNNNNNNNN ............................. TTTTTTTGGCTTTTTCTTTAGACACTTTTAACTT 557733 29 100.0 35 NNNNNNNNNN ............................. TTGTTTGGAAAACGTGCGCGCCAGCCTTCTTTTTT 557797 29 100.0 36 NNNNNNNNNN ............................. TGTATTCTTATAATGAGCTTTGCAAAATGGTTCCCC 557862 29 100.0 37 NNNNNNNNNN ............................. TCACCAATTCATGTCCTACTAGCTTCGGACGTTTCAT 557928 29 100.0 35 NNNNNNNNNN ............................. ACGGTTGAATAAAACGAATAATAAACTGCATGTAT 557992 29 100.0 34 NNNNNNNNNN ............................. AAGCTAGTCGCGAACAATTAAGCGCGTTAGCCCC 558055 29 100.0 36 NNNNNNNNNN ............................. CAACGCTTTTTATTGATATGATACTATATGACATTA 558120 29 100.0 37 NNNNNNNNNN ............................. TGCTTCTTGCTGTTCTTTCTCTTTTTTAAGATTTCAT 558186 29 100.0 36 NNNNNNNNNN ............................. GTCTTTTAGCCTGCTTTTGGTTAAAGTGGGGTTGTC 558251 29 100.0 36 NNNNNNNNNN ............................. TACTTAGCACCTACAAGACTAGCATCACCCTGCGCA 558316 29 100.0 37 NNNNNNNNNN ............................. ATCTACAGAACTCTCCGACTCTTGCACTTCCGTGATA 558382 29 100.0 37 NNNNNNNNNN ............................. ATTGGACCGGAAACTGCAGGCGACTTACTTAATTATC 558448 29 100.0 37 NNNNNNNNNN ............................. ACAGTCAAATGATGATGACCAACTTCCTCTGCCAAAG 558514 29 100.0 38 NNNNNNNNNN ............................. TACATTAGTGTATCGAAATCCGTATCGAAAATTTCTAC 558581 29 100.0 36 NNNNNNNNNN ............................. AAAATTGATCATCAGGTAAACTAGCAACATCAAGTT 558646 29 100.0 36 NNNNNNNNNN ............................. GGAAACGCCGTCTTCCGTCGTTCTAAATTTAAAACT 558711 29 100.0 34 NNNNNNNNNN ............................. TATAAATTAAGGATAAGGAGTGTTTTTGGATGGC 558774 29 100.0 35 NNNNNNNNNN ............................. CTTTCTGGAGCAACTTTTAAAGTGAAAGACAGTGA 558838 29 100.0 36 NNNNNNNNNN ............................. TATCTTTATCTGTAGCTAGTTTGAAATCATCTTCAT 558903 29 100.0 37 NNNNNNNNNN ............................. GAAAGTAAAGAAATCAAGCCTAAATTTGTTTTCCGGT 558969 29 100.0 36 NNNNNNNNNN ............................. GGTTTTAACTTCTAGGTTATTTTGTGCATTTTTTGG 559034 29 100.0 34 NNNNNNNNNN ............................. TATTCTTTTAAAGTTGGCGGTAGTATGGTAACTA 559097 29 100.0 36 NNNNNNNNNN ............................. ATGTCTGCGTGCCCCAGTCTCTCTTGGATTACTTTG 559162 29 100.0 36 NNNNNNNNNN ............................. TTTTCAATGTGCGAGTATGCTCCTCTGGAAATTCCT 559227 29 100.0 37 NNNNNNNNNN ............................. ATCTTGAACCGCTCCCCATGCTTTTTTAGCGCCATCA 559293 29 100.0 35 NNNNNNNNNN ............................. TAACAATGAAAAACGGATTTACAAAATTAGCGTCC 559357 29 100.0 36 NNNNNNNNNN ............................. ACTAACAAAGCACCTGTAAAAGCTAATGCAATCGGA 559422 29 100.0 1 NNNNNNNNNN .......................CAT..A NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 28 29 35 GTTTTAACTACTTATTATGAAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:82.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [56.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [199,74] Score: 0.18/0.18 # # Final direction: F [0.59,0.27 Confidence: MEDIUM] >NC_017540 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================================================== ====== 4378512 56 92.9 59 ATAACGGTAG ................C.......................T.............CG TCACGGGTTCAGATAGCAAAAACCCCGCCGAAGCGGGGTTTTGACATAAAAAGGTGAAA 4378627 56 100.0 60 AAAGGTGAAA ........................................................ CTCCGCTATTCGAATAGCAAAAACCCCGCCGTAGCGGGGCTTTGACATAAAAAGGTGAAA 4378743 56 100.0 AAAGGTGAAA ........................................................ CTCCGCTATTCGAATAGCAAAAACCCCGCCGGAGCGGGGCTTTTGCGTAAAAGGTGAAACTGACCGATAAGCCGGGTTCT ========== ====== ====== ====== ========== ======================================================== 3 56 59 CTGACCGATAAGCCGCGTTCTTTTGGTATAGCGTCGTGGACAGTCATTCATCCTTT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:51.79%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.80,-2.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [8,468] Score: 0.18/0.18 # # Final direction: R [0.37,0.59 Confidence: LOW] >NC_017544 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2637978 36 100.0 30 NNNNNNNNNN TA.G..T.G.T.....G.....TG..T......... CAAGTTAAAGATATCAACTACATTCAGACA 2638044 36 100.0 30 NNNNNNNNNN .................................... AGCTTGCGTTTAGAGGACGAAGAAAAACTA 2638110 36 100.0 30 NNNNNNNNNN .................................... CCTTTGTTTAGTTTGTTTATCTATCTAACT 2638176 36 100.0 30 NNNNNNNNNN .................................... AACAAGAAAAAAGATCCAGACAATATTGCA 2638242 36 100.0 30 NNNNNNNNNN .................................... GCTGTTGCAACATGATCAAAAAAATTATTT 2638308 36 100.0 30 NNNNNNNNNN .................................... TAAGCGTAATATTAATGTCAAAGCTTCTAG 2638374 36 100.0 30 NNNNNNNNNN .................................... TGATGGATGACATTTCTAAGCAAATAACTA 2638440 36 100.0 30 NNNNNNNNNN .................................... AGTAATCTCCTTTTCCAAGGACCATCACGT 2638506 36 100.0 30 NNNNNNNNNN .................................... TTGATAGATAGTGTTAGAAGGGAAATTTAA 2638572 36 100.0 31 NNNNNNNNNN .................................... TTCAGACTATGTTTTCAACAAAGGGATGCTA 2638639 36 100.0 30 NNNNNNNNNN .................................... TCGCCTGTTTGGGCTGTGAACCGAGCTGTT 2638705 36 100.0 30 NNNNNNNNNN .................................... TCATAGTCTGTTGGAACATCTGCATGAACT 2638771 36 100.0 30 NNNNNNNNNN .................................... TTCCCAGCCGTAATAGATACTAAATTACCA 2638837 36 100.0 30 NNNNNNNNNN .................................... GTGTTTCTTTCCCACCTTCTGGTTCAACGC 2638903 36 100.0 30 NNNNNNNNNN .................................... GCTGCCTCGCTTTACTCTTCGTTATCTCCA 2638969 36 100.0 30 NNNNNNNNNN .................................... AACACACCGAGCAATAGAAATACACTGTTA 2639035 36 100.0 30 NNNNNNNNNN .................................... GAATAATCCGTACAGCCTTATCATTATCAA 2639101 36 100.0 30 NNNNNNNNNN .................................... GAAAAAGTTGTCGATCTTACAAAAAAATTC 2639167 36 100.0 30 NNNNNNNNNN .................................... ACCAACGGCGCGCAAAAGAAAATCATTAAA 2639233 36 100.0 30 NNNNNNNNNN .................................... GCTATAGAGATCCATTTAACCGTTTCATAC 2639299 36 100.0 30 NNNNNNNNNN .................................... AGCGTCAGAGCCCTCTTCTTCCACACGTGT 2639365 36 100.0 30 NNNNNNNNNN .................................... GCGCTTCCCATCGATTTAAACGCATTTACA 2639431 36 100.0 30 NNNNNNNNNN .................................... CCTTTGGAGGAACTGAATTTACTGGCACTA 2639497 36 100.0 30 NNNNNNNNNN .................................... GCCTTGCTTGACCCAACTAGTGACTTCTTC 2639563 36 100.0 30 NNNNNNNNNN .................................... TTGTTGTCGTCGGGTAGTTCGCCCATATCT 2639629 36 100.0 31 NNNNNNNNNN .................................... ATTCGTGAATGCCGACAATCGTTCATTTCCA 2639696 36 100.0 30 NNNNNNNNNN .................................... GGTGAGGTAAATCAATATAAAGATGCATTA 2639762 36 100.0 30 NNNNNNNNNN .................................... TCGTCCACTCTAGTAGCATCTAGGTCTAGG 2639828 36 100.0 30 NNNNNNNNNN .................................... GTCATTTTTAATAGTTTCAATTGCTGATAA 2639894 36 100.0 30 NNNNNNNNNN .................................... TCAAAAGCGCGCATGAGGAAGAAATCACGA 2639960 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 31 36 30 GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:69.44%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [179,130] Score: 0/0.18 # # Final direction: R [0.27,0.78 Confidence: MEDIUM] >NC_017548 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2887565 28 100.0 32 TGGGTTCGAG ............................ GACGGCGATGCGGCAACCCTAGCGGCGTCGAA 2887625 28 100.0 32 CGGCGTCGAA ............................ GGCTTCCGAATCGGAAATCTCGACCAGTACGA 2887685 28 100.0 32 ACCAGTACGA ............................ GCCCGCCCCAAGAAGTACTGGTGACGACCTTG 2887745 28 100.0 32 GACGACCTTG ............................ TGACCCCGGAAGATATCGACGCGGCGATTGCC 2887805 28 100.0 32 GGCGATTGCC ............................ GGTTCCCGCGAAACGTCCCATGTCCGGCATCA 2887865 28 100.0 32 TCCGGCATCA ............................ CAGGTGTCGGGCAACCCGTGGCCGGGGATGGT 2887925 28 100.0 32 CGGGGATGGT ............................ ACGAATTGCCGCCAGCCGTCGCTCCAGCTTCT 2887985 28 100.0 32 TCCAGCTTCT ............................ GAGCAGGTCAACACCGCGCTGGCCGCGCAACA 2888045 28 100.0 32 CCGCGCAACA ............................ GGCAGCAGCACGACATCACAATTGAACGCCAC 2888105 28 100.0 32 TGAACGCCAC ............................ AGCTGGCCAGCTCGGTGAACGCCGGGCTGTCA 2888165 28 100.0 32 CGGGCTGTCA ............................ TATCGCCGTCCTGTCGGTCATCTGCGGTTGGT 2888225 28 100.0 TGCGGTTGGT ............................ TAGCTCCGAAA ========== ====== ====== ====== ========== ============================ 12 28 32 TTTCTTAGCTGCCTACACGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,8] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [31.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [266,271] Score: 0/0.18 # # Final direction: R [0,1.51 Confidence: HIGH] >NC_017544 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 524151 29 100.0 36 AAGTTAGTGG ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 524216 29 100.0 35 AGCATGTAGC ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 524280 29 100.0 37 TGGGTTACAA ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC 524346 29 100.0 35 CCACCAAAGC ............................. CGCTCTGACCTGTTCCTTGTGCAACACTCGTTACA 524410 29 100.0 34 ACTCGTTACA ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 524473 29 100.0 35 TCGTTTATAA ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 524537 29 96.6 36 TCCTTTCTAT A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 524602 29 100.0 35 ATCAAATTAA ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 524666 29 96.6 TTACAATTTC ................A............ TTGGTTCCTT ========== ====== ====== ====== ========== ============================= 9 29 35 GTTTTAGTTACTTATTGTGAAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [240,408] Score: 0/0.18 # # Final direction: F [0.78,0.27 Confidence: MEDIUM] >NC_017545 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 568865 29 100.0 36 NNNNNNNNNN ............................. AAAGACCTTCGATTTCATTCTCACTTTCCAGTTAAT 568930 29 100.0 36 NNNNNNNNNN ............................. TTTTTTGTAGCGGAGGTGTACAATGCCGAAAGTGAC 568995 29 100.0 36 NNNNNNNNNN ............................. CGCTTCACGTTGGTTTTTCGTAGCCCAATTGCTAAA 569060 29 100.0 37 NNNNNNNNNN ............................. ACGTTGGACAACGAGGTGAGTATGATATGACTCAAAT 569126 29 100.0 36 NNNNNNNNNN ............................. GCGGAATGCGAAGTTGTTATATATAACTTATCTCGC 569191 29 100.0 36 NNNNNNNNNN ............................. TCTTAAATGGTGTTTGCACATGTTAAGGGAGTCATG 569256 29 100.0 35 NNNNNNNNNN ............................. GTGCATATCTCCTATATTCATGGCTGTATATGTGT 569320 29 100.0 36 NNNNNNNNNN ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 569385 29 100.0 36 NNNNNNNNNN ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 569450 29 100.0 34 NNNNNNNNNN ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 569513 29 100.0 37 NNNNNNNNNN ............................. AAGTCTACTTGGATTTAGCTCTACACCTGCAACATGA 569579 29 100.0 34 NNNNNNNNNN ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 569642 29 100.0 34 NNNNNNNNNN ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 569705 29 100.0 36 NNNNNNNNNN ............................. TTGTTCGACGGCTTAGACAACCATCACGCTTCTTTA 569770 29 100.0 36 NNNNNNNNNN ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 569835 29 100.0 36 NNNNNNNNNN ............................. CTCATAAGGATTTCGAGGCGGGTTAAACGACATGTA 569900 29 100.0 35 NNNNNNNNNN ............................. GCTTTTTTCAACAATTTTATCACCAGATGTCATTA 569964 29 100.0 36 NNNNNNNNNN ............................. TGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTC 570029 29 100.0 37 NNNNNNNNNN ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 570095 29 100.0 36 NNNNNNNNNN ............................. GTCAATAACTAGACGAGCTAACGTTTGTCGCTGTTT 570160 29 100.0 35 NNNNNNNNNN ............................. TGTTATCTCCTGTGATGTAAAATAACCCTTCTATC 570224 29 100.0 37 NNNNNNNNNN ............................. TAATACAAAATATTCATAACTCCTACATCATTATATA 570290 29 100.0 36 NNNNNNNNNN ............................. TTGCAAACCTAACTTATCTTTGTTTTTTTGCTTTTC 570355 29 100.0 36 NNNNNNNNNN ............................. GGAACAGGCGCGCGCTGGGATTTAAAAGCAGAAGGC 570420 29 100.0 36 NNNNNNNNNN ............................. CACGTACTTTAATCGGCATCAAACCACCTCGATTTC 570485 29 100.0 34 NNNNNNNNNN .......................C..... CAAGATATGCTAGAAATGGCGCAAATAGCGCGCG 570548 29 100.0 36 NNNNNNNNNN ............................. ACGTTTGCGGTAGTTTTACCGGGCACGGTCAAATAT 570613 29 100.0 37 NNNNNNNNNN ............................. CAAAACAGAGAACGCGTGTTCATTATCGGACATCTTA 570679 29 100.0 35 NNNNNNNNNN ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 570743 29 100.0 37 NNNNNNNNNN ............................. AAAAACTATGCAATTAGCAAAGTGATTTTATGTAATT 570809 29 100.0 34 NNNNNNNNNN .......................A..... TAACGAGCCAATTAAACCATCTTCTTCTAGTAAT 570872 29 100.0 1 NNNNNNNNNN .......................CAT..A NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 32 29 35 GTTTTAACTACTTATTATGAAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:82.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [55.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [199,74] Score: 0.18/0.18 # # Final direction: F [0.59,0.27 Confidence: MEDIUM] >NC_017545 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2732165 36 97.2 30 AAGAATATTC ...............G.................... CGAACGGCAGAGGAACAGTATTATGCGACG 2732231 36 100.0 30 TTATGCGACG .................................... GGCATTCTTGCTCTTGATCTTGACCTTGAA 2732297 36 100.0 30 TGACCTTGAA .................................... TAACTATCCATCTTGCTATCTGTATATGCT 2732363 36 100.0 30 TGTATATGCT .................................... TTCTAACAATAAATGAATACATCAAAAAGA 2732429 36 97.2 30 ATCAAAAAGA .A.................................. CAAGTGCACGCAAAGGAAGGCACAACAGTT 2732495 36 100.0 30 CACAACAGTT .................................... TGGCGTGTTCAAAAAATGAAAAGTGCCTTG 2732561 36 100.0 30 AAGTGCCTTG .................................... TTAGTATCTAATTCGTGTTAATATTTTTTT 2732627 36 100.0 30 ATATTTTTTT .................................... ACGACGCCATCAACATGTGTTTGCGGATAG 2732693 36 100.0 30 TTGCGGATAG .................................... TAATAAATCCATTCTGGTTCATCATCAAAA 2732759 36 100.0 30 ATCATCAAAA .................................... GACATGGTTTTCTTATCTGCAACTTGCTTA 2732825 36 100.0 30 AACTTGCTTA .................................... ACTCGGTCATTTAAAATATCAAGGCATAGA 2732891 36 100.0 30 AAGGCATAGA .................................... GAACAACAGTTAACAGTGTTTATAACAACA 2732957 36 100.0 30 TATAACAACA .................................... CTGTACTCATTAATTAATTCTTGCATTCTC 2733023 36 100.0 30 TTGCATTCTC .................................... GCAACATAATGCCTAGGGTTCCAAACGTTA 2733089 36 100.0 30 CCAAACGTTA .................................... CTGGGAAAGACTCTTCGTTCACTTCGTCTT 2733155 36 100.0 30 ACTTCGTCTT .................................... GTGTACATCCAATTTGTAGCTTGATAGATG 2733221 36 100.0 30 TTGATAGATG .................................... ACAACAGTGTATCGTTCATCAGAAACGGGT 2733287 36 100.0 30 AGAAACGGGT .................................... CAAAAGTATCTTGTGAAAGCGAAAGAACCA 2733353 36 100.0 GAAAGAACCA .................................... CTCGCAGAAT ========== ====== ====== ====== ========== ==================================== 19 36 30 GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:69.44%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [592,130] Score: 0.18/0.18 # # Final direction: R [0.18,0.78 Confidence: MEDIUM] >NC_017545 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 553387 29 100.0 35 AAGTTAGTGG ............................. AAACAGAAATGAAAGATGGTGAAGAAGTCCTTACC 553451 29 100.0 34 AGTCCTTACC ............................. TTTTTTAAGGCAAGTGTCATCGTTTCTAATCCGC 553514 29 100.0 34 TCTAATCCGC ............................. CTAGAACAAAAGAAAAATCATGAGGGATATTTAC 553577 29 100.0 35 GGATATTTAC ............................. GGTTTTGAATGCTGGTGGTGATAGTCCTAATGAAG 553641 29 96.6 CCTAATGAAG ................A............ TTGGTTCCTT ========== ====== ====== ====== ========== ============================= 5 29 34 GTTTTAGTTACTTATTTTGAAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:82.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [240,408] Score: 0/0.18 # # Final direction: F [0.41,0.27 Confidence: LOW] >NC_017547 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 526833 29 100.0 42 AAGTTAGTGG ............................. ACACAAATATGAAAAAACTTCTATTAAAAGCAATTCCATCCT 526904 29 100.0 36 ATTCCATCCT ............................. AAACCTATCACATTTAAGTATTTAGAGATTCCTAAA 526969 29 100.0 35 GATTCCTAAA ............................. ACAGATCAAACTCCGGAAGGGTGATTGTAAATGGC 527033 29 100.0 36 TGTAAATGGC ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 527098 29 100.0 35 AGCATGTAGC ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 527162 29 100.0 34 TGGGTTACAA ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 527225 29 100.0 35 TCGTTTATAA ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 527289 29 96.6 36 TCCTTTCTAT A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 527354 29 100.0 35 ATCAAATTAA ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 527418 29 100.0 TTACAATTTC ............................. TTGGTTCCTT ========== ====== ====== ====== ========== ============================= 10 29 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [239,408] Score: 0/0.18 # # Final direction: F [0.78,0.27 Confidence: MEDIUM] >NC_017546 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 543052 29 100.0 36 AAGTTAGTGG ............................. CGATAAAAAAGATATTAGTAATTTATTTGCAATTTA 543117 29 100.0 36 TTGCAATTTA ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 543182 29 100.0 35 AGCATGTAGC ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 543246 29 100.0 37 TGGGTTACAA ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC 543312 29 96.6 CCACCAAAGC .......................A..... GAAAACCTGTT ========== ====== ====== ====== ========== ============================= 5 29 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [239,276] Score: 0/0.18 # # Final direction: F [0.78,0.27 Confidence: MEDIUM] >NC_017548 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1542032 28 100.0 32 TTCGGGGCTA ............................ TGCCGATCGCGCCGGAAGCGGTGAGCCAGTTC 1542092 28 100.0 32 GAGCCAGTTC ............................ TCGGTGACGCTGGACTGGTCGAGGGGCGTAGA 1542152 28 100.0 32 GGGGCGTAGA ............................ ATATCCAACACCGGGACGGGAGTCCGATCCTA 1542212 28 100.0 32 TCCGATCCTA ............................ AAAACGAGCCACGGGTGTCGGCCTTCGACTCA 1542272 28 100.0 32 CTTCGACTCA ............................ TCAAAGCGCGAACCATCCAACGGCAGTTCGCA 1542332 28 100.0 32 GCAGTTCGCA ............................ ATAAGGCTGTCGTCACAGCGCTGCATGGCTGA 1542392 28 100.0 32 GCATGGCTGA ............................ TGGGCCGGCGCCTACGCGGCGCATCAGCCGGT 1542452 28 100.0 32 ATCAGCCGGT ............................ TCGGACAAAGACAGCCTCCGGTCATAGGGTAG 1542512 28 100.0 32 CATAGGGTAG ............................ TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 1542572 28 96.4 32 CGAGGCTCAT .............T.............. ATACTGACTCAGCCAGGGAAAAGTCACTTGGA 1542632 28 96.4 32 GTCACTTGGA .............T.............. AGCGTGCCATGGCGGCGGTAAGTCAAACCGTT 1542692 28 96.4 32 TCAAACCGTT .............T.............. TGGTCGAACAGATGGCGGTCCTCGGCCAACTG 1542752 28 96.4 32 CGGCCAACTG .............T.............. ACGTCGGAACGCAACTACCTGACCGCGTTGGT 1542812 28 96.4 32 CCGCGTTGGT .............T.............. CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 1542872 28 96.4 32 TCGCCGCCCA .............T.............. TCGGCGAGGCGATCGATCATGCGAATCAGCAA 1542932 28 96.4 32 GAATCAGCAA .............T.............. ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 1542992 28 96.4 GTCGATGCTT .............T.............. CTCAAGAAAG ========== ====== ====== ====== ========== ============================ 17 28 32 GTTCACTGCCGTACAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [9,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 92% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [58.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [965,798] Score: 0/0.18 # # Final direction: F [1.51,0 Confidence: HIGH] >NC_017548 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2878171 28 100.0 32 TTTGGGTCTA ............................ TCGGGAAAGAGACCATGACCATCGGTGAAAAC 2878231 28 100.0 32 CGGTGAAAAC ............................ ATCCGGGCCTGCGCAGATCACCCGGCCAGCTT 2878291 28 100.0 32 CGGCCAGCTT ............................ AGGCACTGCAGGCCTACCGGCGTACCCTGCGC 2878351 28 100.0 32 TACCCTGCGC ............................ ACGTCAATGCAGAACTCGAACGTCGTGTGCAT 2878411 28 100.0 32 TCGTGTGCAT ............................ ACCCAGTGAAATCAGTCCCCGCGCTCGTATCG 2878471 28 100.0 32 GCTCGTATCG ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 2878531 28 100.0 32 GGCCCAGGCC ............................ GAGATCATCCGGCGCAAGCGGGAACAGCTGCT 2878591 28 100.0 32 AACAGCTGCT ............................ TCACGACCTTCTCGAACGTTCCCAGGTACGTA 2878651 28 100.0 32 CAGGTACGTA ............................ AAGGTCAATTCCCAGGTGAAGCAACTGGTGGC 2878711 28 100.0 32 AACTGGTGGC ............................ GTAGCAGAGAAACTCAACAGCCCGACTGGACG 2878771 28 100.0 33 CGACTGGACG ............................ GTAGGGATTGTGAGCGTCGAGGAGCGCCAGGGC 2878832 28 100.0 32 GCGCCAGGGC ............................ TCGCATAATGGGCATTACGTGTAAATGCTCGC 2878892 28 100.0 AAATGCTCGC ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT ========== ====== ====== ====== ========== ============================ 13 28 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.57%AT] # Reference repeat match suggestion: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [396,243] Score: 0/0.18 # # Final direction: F [0.87,0 Confidence: HIGH] >NC_017547 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 543872 29 100.0 34 NNNNNNNNNN ............................. AGTTTTAGAAGTATGTTAGACGTTGACGAAAATC 543935 29 100.0 35 NNNNNNNNNN ............................. TCAAGCTGGTATGCACTTTTTGAGGTAAGCTATTG 543999 29 100.0 37 NNNNNNNNNN ............................. GAAAAAGAACCAGTTAAAGAACCCGTGAAAGAAGAAC 544065 29 100.0 36 NNNNNNNNNN ............................. AAAGAAAACTTGCAGCAGAATGACGCAAATCATGAA 544130 29 100.0 38 NNNNNNNNNN ............................. AGAAATTCTCATGGCGCTAATAACCCCATGCCAGACGA 544197 29 100.0 34 NNNNNNNNNN ............................. CATTTCAATCACTTCTTTTGATGTAACATTAAGC 544260 29 100.0 36 NNNNNNNNNN ............................. TGTAACTGCAAACGTCTTTCCGCAAATTCGTGTAGT 544325 29 100.0 36 NNNNNNNNNN ............................. TTATCCATTCCGTCATATCCCCACGCATCTGTTCCA 544390 29 100.0 37 NNNNNNNNNN ............................. AGAGTTTCCAGCTGTAAGGCCAGATATTGATAATTTC 544456 29 100.0 36 NNNNNNNNNN ............................. TATGAAATTATCTGCGAAGAGGGAAAACTAGACGAT 544521 29 100.0 36 NNNNNNNNNN ............................. AGCGGTTTTTCTTCTATAGAAGTAACTTGCTTTTGT 544586 29 100.0 37 NNNNNNNNNN ............................. GTTTATAGTATGTAAAACAAACACAGGAAAATATATC 544652 29 100.0 35 NNNNNNNNNN ............................. TAAATTGTTAAGCTTGTCAACAACCTGCAAGAACT 544716 29 100.0 37 NNNNNNNNNN ............................. GTTTCCAGTTTCTTCTATATAAACAACAAAAATAAAA 544782 29 100.0 39 NNNNNNNNNN ............................. ACGAAAATAGCTAAATTGGATTTACTTGAGTCTTTTTTC 544850 29 100.0 38 NNNNNNNNNN ............................. CAAAGCAAGTACAGAAGCGTATTATGCTCTATTAGAGT 544917 29 100.0 37 NNNNNNNNNN ............................. ATTTAAGTATTAATGTTTTTAAAAAGTTTGATTTATT 544983 29 100.0 38 NNNNNNNNNN ............................. TATCAAAAAGCTTGTGCTATTATGGAAAGTCGTTGGGA 545050 29 100.0 36 NNNNNNNNNN ............................. TTTAATAACTATGACAGTGAATTTAAAACGAAAGCG 545115 29 100.0 38 NNNNNNNNNN ............................. TCTGGAGAATCTGATGTTAAAATCTCTGATCATGTTGT 545182 29 100.0 38 NNNNNNNNNN ............................. AGAAATTAAAGAAGGTAGGGCATTCGTTGCACCGGAAA 545249 29 100.0 35 NNNNNNNNNN ............................. AAAATTAGCGTTCCAAAAATAAGACCTGTCGCAAC 545313 29 100.0 34 NNNNNNNNNN ............................. ATACTAAAACTTCGCTCATTTTCCGCAACTCCTT 545376 29 100.0 35 NNNNNNNNNN ............................. TTAAGAAATATGATTGATTCTCTGGATATCACTTT 545440 29 100.0 37 NNNNNNNNNN ............................. CCTCCACAATCACTCGGCTTTCTTCGTCTTTATCGAC 545506 29 100.0 36 NNNNNNNNNN ............................. ATTTAACAAATCAGCTAAATCAGCGCGACTCTGATA 545571 29 100.0 37 NNNNNNNNNN ............................. GTCGCTAGAGCTAAAAAATGGATAGAGGAACAACAAG 545637 29 100.0 36 NNNNNNNNNN ............................. TCAACTAATATTAATATCTCTTGTGGATTGGCCATT 545702 29 100.0 35 NNNNNNNNNN ............................. ACTTGAAGGACGTGCTTCAAAATATTTAGTTGCAT 545766 29 100.0 37 NNNNNNNNNN ............................. TCTGTTGTAACTGTTGTGCCTTCCACAGCGTGCACTT 545832 29 100.0 35 NNNNNNNNNN ............................. ACATTTTGCACGCACCAAGCTTGACGGTCTGAAAC 545896 29 100.0 35 NNNNNNNNNN ............................. TTTATCTTTATCTATTTCTCCAGTAATAGAGCACG 545960 29 100.0 34 NNNNNNNNNN ............................. ACATTTTTATCTGAGAAAGGGTTTAGGGAAAATT 546023 29 100.0 35 NNNNNNNNNN ............................. AAAAAAACAACTGCGCAAGAAGGGTATGAGCAATT 546087 29 100.0 36 NNNNNNNNNN ............................. GTTGGACACCGTCAGCAGAGCTTATAAATCCACTGT 546152 29 100.0 36 NNNNNNNNNN ............................. TTTTTCCATTCTTCTCGCCGATGTATTCCTTTTCTC 546217 29 100.0 36 NNNNNNNNNN ............................. AACAAAAATACGTTATTTGTTCGATGTAATGTAAAA 546282 29 100.0 38 NNNNNNNNNN ............................. TCAACTAACGAGGCAACAGGTGTTTTATAGCTGTAAAG 546349 29 100.0 36 NNNNNNNNNN ............................. TGGTAAATTTTATAGGAATGTCAACACCTTGAATTT 546414 29 100.0 36 NNNNNNNNNN ............................. CCAGAAATGGAGTGCGCGGTTGATTTTGGATTTAGC 546479 29 100.0 37 NNNNNNNNNN ............................. AAGAACATTAGATGAACTTAAAGCGTCTGTTGAACAA 546545 29 100.0 35 NNNNNNNNNN ............................. AAACCAGAGCCAGAAAAAGAAGTTGTGAAAGAAGA 546609 29 100.0 37 NNNNNNNNNN ............................. ACGTCACTTGTTTTTGCCTTTGTTTTCGCCCTTTCCT 546675 29 100.0 36 NNNNNNNNNN ............................. GTTGAAAAGCGCACCATTGTTTTAATTTTTTTAATT 546740 29 100.0 37 NNNNNNNNNN ............................. TTTTGTCGCATAAATTCTTTGATGTGGCGGACTGACG 546806 29 100.0 35 NNNNNNNNNN ............................. AACAGTATCATCACGTTGTTATTGCTGTCACCTGT 546870 29 100.0 36 NNNNNNNNNN ............................. TAACCAAGCATTGCCAAAAACTCGTCTGTTGATAAT 546935 29 100.0 36 NNNNNNNNNN ............................. TTCTATTGCAGAACAGAATGAATTGTATGCACAAGG 547000 29 100.0 37 NNNNNNNNNN ............................. TCGTTAATCATAATTGATGAAAGTCATCATGTGTTAG 547066 29 100.0 36 NNNNNNNNNN ............................. ACGGGTACCAGCTTTGATTTGCCGTTTTCAATTATT 547131 29 100.0 35 NNNNNNNNNN ............................. TTTATCACTCCTATGCTTTTCTTATTTCTGTAAAT 547195 29 100.0 35 NNNNNNNNNN ............................. GCTTTTTTCAACAATTTTATCACCAGATGTCATTA 547259 29 100.0 36 NNNNNNNNNN ............................. TGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTC 547324 29 100.0 36 NNNNNNNNNN ............................. TTAATAAATCCGATGGTGATGCCTATGTTATACGTC 547389 29 100.0 35 NNNNNNNNNN ............................. TAAAACATCGCTTCGTTATACAATGTCTTTTTATA 547453 29 100.0 35 NNNNNNNNNN ............................. TGTTATCTCCTGTGATGTAAAATAACCCTTCTATC 547517 29 100.0 37 NNNNNNNNNN ............................. CAAAACAGAGAACGCGTGTTCATTATCGGACATCTTA 547583 29 100.0 35 NNNNNNNNNN ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 547647 29 100.0 1 NNNNNNNNNN .......................CAT..A NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 59 29 36 GTTTTAACTACTTATTATGAAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:82.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [56.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [199,74] Score: 0.18/0.18 # # Final direction: F [0.59,0.27 Confidence: MEDIUM] >NC_017551 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3161011 36 100.0 35 NNNNNNNNNN ACTT.C.A..A.CG.G.....G.............. TTGATTGGTGCAGTTGTGCTTGTTTTGATTGGTGT 3161082 36 100.0 35 NNNNNNNNNN .................................... CCGTTCTGATTTTTTCTTTTCCTTCCTTTTGTTAT 3161153 36 100.0 36 NNNNNNNNNN .................................... CAGTAGATTTTGGATACACAAACCCGTTTGTGTTTC 3161225 36 100.0 35 NNNNNNNNNN .................................... GAATACAACCTCTTCAAAAAAGAGGAACCGGCGTA 3161296 36 100.0 1 NNNNNNNNNN ............................A.TTAG.T NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 5 36 35 CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.60,-3.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [11-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [773,518] Score: 0/0.18 # # Final direction: R [0.37,0.41 Confidence: LOW] >NC_017551 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3160604 37 100.0 34 NNNNNNNNNN ..................................... CCGTTCTGATTTTTTCTTTTCCTTCCTTTTGTTA 3160675 37 100.0 34 NNNNNNNNNN ..................................... ACCCCACGATACTACCTGTCAGACCGTGCCCGGA 3160746 37 100.0 34 NNNNNNNNNN ..................................... GCACTCCTCGAACTGGTAAAACTACCGATGCTCG 3160817 37 100.0 1 NNNNNNNNNN C............................G.TTAG.A NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 4 37 34 TCTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.60,-3.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [366,996] Score: 0.18/0.18 # # Final direction: F [1.05,0.18 Confidence: HIGH] >NC_017551 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3162190 36 100.0 34 NNNNNNNNNN ..T.CA.A..TCGG.......G.............. GAATAACTCGTTCGGAAAGCGTTCTGCGGATCTT 3162260 36 100.0 37 NNNNNNNNNN .................................... TCGTAAAGATCGTCTGCGTGTTCGTCGTGATACGTGT 3162333 36 100.0 36 NNNNNNNNNN .....................G.............. AGCATAGCGGACGTGTTCTTTGTTCGTTTTATCGAA 3162405 36 100.0 36 NNNNNNNNNN .................................... AGCGTGCAACAAAACACGGAATACAATTCTCTTTGC 3162477 36 100.0 1 NNNNNNNNNN ............................A.TTAG.. NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 5 36 35 CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.60,-3.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [9-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1952,329] Score: 0.18/0.18 # # Final direction: F [0.55,0.41 Confidence: LOW] >NC_017563 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 639512 36 100.0 30 ATCATTTGAG .................................... TCTTTCTATAGCATAATTGTTAGTTGTCCT 639578 36 100.0 30 TAGTTGTCCT .................................... GAAAGAATCGGTCTTCTAGATGGATTCCAA 639644 36 100.0 30 TGGATTCCAA .................................... TAGGAAATTCATACCCTGCAGATATATCAT 639710 36 100.0 30 GATATATCAT .................................... AACGATAAAAAAGAAGAAGCTTTCACGCCT 639776 36 100.0 30 TTTCACGCCT .................................... TCGATTTTAAGCCGTGTATTTTGCTAGGTA 639842 36 100.0 30 TTGCTAGGTA .................................... GCTTGGAGGCGTCAATGTTCGCAGCTTATC 639908 36 100.0 30 GCAGCTTATC .................................... ACCTGTCATCTCTGGGAGTTAAATTTCCTT 639974 36 100.0 30 AAATTTCCTT .................................... ATTAGCACGAGCCTCTGTATACTGTTCTTT 640040 36 100.0 30 ACTGTTCTTT .................................... TTTGGTCTGGTGCGCCTTTTATATTGAATT 640106 36 100.0 29 ATATTGAATT .................................... GGTTCCCTATGAGCAAAGGACAACGCTTT 640171 36 100.0 30 ACAACGCTTT .................................... TCGATTTTAAGCCGTGTATTTTGCTAGGTA 640237 36 100.0 30 TTGCTAGGTA .................................... GCTTGGAGGCGTCAATGTTCGCAGCTTATC 640303 36 100.0 30 GCAGCTTATC .................................... ACATTGAGTAAGTCAATAGTTTGCGATGGC 640369 36 100.0 30 TTGCGATGGC .................................... TAGAATAAGTGAATGGGAAACTGACGGAAC 640435 36 100.0 30 CTGACGGAAC .................................... ACATAGAAGGCTAAGCAATCAAGCAAAAGA 640501 36 100.0 30 AAGCAAAAGA .................................... ACGACATCAAGCTGATTATCTTCTACATAC 640567 36 100.0 30 TTCTACATAC .................................... CTGTCTAACATAGTCCCAAACTTTATCATA 640633 36 100.0 30 CTTTATCATA .................................... CTAAAAACGGTGTTCTATATCGAGGTCAAC 640699 36 100.0 30 CGAGGTCAAC .................................... TGTTTCCATCCGTGGTGAAATGGTAGAAGT 640765 36 100.0 30 TGGTAGAAGT .................................... TTGAGCATTTACTTACTAATTTCAAACGGT 640831 36 100.0 30 TTCAAACGGT .................................... AGATGACCTATAATATAATCAAAATCACCT 640897 36 100.0 30 AAAATCACCT .................................... TCTATCTTAGGCGGTGGACTGATGACGTTA 640963 36 100.0 30 GATGACGTTA .................................... GATAGATATATATATTATATCACAATCCTA 641029 36 100.0 30 CACAATCCTA .................................... TTATAGTATATCTAATGTGTTCCCGTTTGT 641095 36 100.0 30 TCCCGTTTGT .................................... TTGAAATTTATAATATGGATGTCGATGATG 641161 36 100.0 30 GTCGATGATG .................................... TCTAGAGACCTCTTCGTGTTGTCACAACCT 641227 36 100.0 623 GTCACAACCT .................................... GCTCTTTCCTACTCCTGTGTCTCCTATTAGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACGTTTATCACTTATTTGATATACACTTATAAGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACATATCGGTGGTGGTGCGTTTGAAACTGACAGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACGACCCACGGATACCGCCAAAACAGCACGTGGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACGAAGTGATAGACGTTGTTAACTCATCAGCAGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACTTTCTGTGTACTCCATCGGCTTTTGAGTGTGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACGCTTTGCGAGTAACGCCGGTTGCTTTTCCTGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACTTGGCATCAGTGAATTTGATGCCTGGAAGTGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACAATTTTGCCCCTTCTTTGCCCCTTGACTAGGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACACCATTAGCAATCATTTGTGCCCATTGAGT 641886 36 94.4 CCCATTGAGT ..................................GT TTGATTCA ========== ====== ====== ====== ========== ==================================== 28 36 51 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:69.44%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [64,43] Score: 0/0.18 # # Final direction: F [0.41,0.37 Confidence: LOW] >NC_017563 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1363057 36 100.0 30 GATAACAAAA .................................... ATAAGATTGAAACATACTTGTGCAAGTGTG 1363123 36 100.0 30 TGCAAGTGTG .................................... AATTATCTTGGTAGAAAACTTTATTATTTA 1363189 36 100.0 31 TTATTATTTA .................................... TCTCTGTATAGAGTGTATTTATCGCTGTCCG 1363256 36 100.0 31 TCGCTGTCCG .................................... TAAGTTCACTACGTGCCATTTCAAGGCTAAG 1363323 36 100.0 30 CAAGGCTAAG .................................... ATAACGGTCAAAATATAGCTTACTTAGCTT 1363389 36 100.0 30 TACTTAGCTT .................................... ATGCAATAAAATCGTGCTACGGGCGTTTTA 1363455 36 100.0 30 GGGCGTTTTA .................................... TTTTTATTTTATAGTTTGCGTGGTCTAGTG 1363521 36 100.0 30 TGGTCTAGTG .................................... ATAACGGTCAAAATATAGCTTACTTAGCTT 1363587 36 100.0 30 TACTTAGCTT .................................... ATGCAATAAAATCGTGCTACGGGCGTTTTA 1363653 36 100.0 30 GGGCGTTTTA .................................... GTATCGACGTTCGGACATATCCTAGCAAAA 1363719 36 100.0 30 CCTAGCAAAA .................................... AGCGTAGCGTAGTGTATGTGTAGCGCCACC 1363785 36 100.0 30 TAGCGCCACC .................................... CCACTAGCATCATATTCTTTTGACTTAGAA 1363851 36 100.0 30 TGACTTAGAA .................................... ATGTACTTCGAATTATTCAATTTTAAGAAG 1363917 36 100.0 31 TTTTAAGAAG .................................... TTAGGTCCAGGTACACCTTGGTCACCTCTAG 1363984 36 100.0 30 TCACCTCTAG .................................... GGTCTTTCCGAATCCATTTATTAGATTGAG 1364050 36 100.0 30 TTAGATTGAG .................................... AGGTGTGGCTACGGATTGAAACTGCTAACG 1364116 36 100.0 30 ACTGCTAACG .................................... CACAAAAGCCCAAAAATAGACAAGCCATTC 1364182 36 100.0 30 CAAGCCATTC .................................... TTTAAGTTGTTTTATTAAGCATAGGCCGTT 1364248 36 100.0 30 ATAGGCCGTT .................................... TTTCTATGGTACACACCTAAACGAACACAA 1364314 36 100.0 30 ACGAACACAA .................................... GATAATCAAGGGGGCTTTTTTGATATTACT 1364380 36 100.0 TGATATTACT .................................... CTCGTAGGAT ========== ====== ====== ====== ========== ==================================== 21 36 30 GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-5.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [68.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [211,323] Score: 0/0.18 # # Final direction: R [0.27,0.37 Confidence: LOW] >NC_017563 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 641292 36 100.0 30 TCTCCTATTA .................................... GTTTATCACTTATTTGATATACACTTATAA 641358 36 100.0 30 ACACTTATAA .................................... ATATCGGTGGTGGTGCGTTTGAAACTGACA 641424 36 100.0 30 GAAACTGACA .................................... GACCCACGGATACCGCCAAAACAGCACGTG 641490 36 100.0 30 ACAGCACGTG .................................... GAAGTGATAGACGTTGTTAACTCATCAGCA 641556 36 100.0 30 CTCATCAGCA .................................... TTTCTGTGTACTCCATCGGCTTTTGAGTGT 641622 36 100.0 30 TTTTGAGTGT .................................... GCTTTGCGAGTAACGCCGGTTGCTTTTCCT 641688 36 100.0 30 TGCTTTTCCT .................................... TTGGCATCAGTGAATTTGATGCCTGGAAGT 641754 36 100.0 30 GCCTGGAAGT .................................... AATTTTGCCCCTTCTTTGCCCCTTGACTAG 641820 36 100.0 CCTTGACTAG .................................... ACCATTAGCAATCATTTGTGCCCATTGAGT ========== ====== ====== ====== ========== ==================================== 9 36 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:69.44%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [98,109] Score: 0/0.18 # # Final direction: R [0,0.37 Confidence: MEDIUM] >NC_017566 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1971280 28 100.0 32 TTTTTCCATT ............................ TTGACCAAACCAATGATCGTTAAGTTCCATAC 1971340 28 100.0 32 AGTTCCATAC ............................ TATCAGGTCGGACGACTTAATCGTGTCGTTCA 1971400 28 100.0 32 GTGTCGTTCA ............................ TAAACATTATCTGTTCGCTAACTGGCACGATA 1971460 28 100.0 32 TGGCACGATA ............................ AGCTACGTGAATTAAACCAGATAGCACATTCA 1971520 28 100.0 32 AGCACATTCA ............................ TTTGATTTGCTTAATGCTGGTTGCACTTTTGT 1971580 28 100.0 32 GCACTTTTGT ............................ GTTGTACCACCAACGGTCAACCACAGGAGAAA 1971640 28 100.0 32 ACAGGAGAAA ............................ ATATTTTAAAAGCAATGCCAGATGGTCGCTTG 1971700 28 100.0 32 TGGTCGCTTG ............................ AACCCGCGCCAGAAATGGAAGGTTGTACCTAG 1971760 28 100.0 32 TTGTACCTAG ............................ TCGCTTCATTCTGCGCTCGATGCCAGTGTAAA 1971820 28 100.0 32 CCAGTGTAAA ............................ TGATACATAACCCGCGCCAGCGGTCACTTTAA 1971880 28 100.0 32 GTCACTTTAA ............................ GATTAGGTTGGGTCAACTGAGGCTGCGACTTC 1971940 28 100.0 32 CTGCGACTTC ............................ GTTACCAGAATTATTAATAGCAGTTGTTATTT 1972000 28 100.0 32 GTTGTTATTT ............................ GCCAGTAATTGGCATCAACAATTGAGCATTTT 1972060 28 100.0 32 TGAGCATTTT ............................ AACACATCAGTGGGTTGGCCGAACTACGTCAG 1972120 28 100.0 32 ACTACGTCAG ............................ TTCTTCGGTGCCTTATTTTCTTTAGGAGCCGG 1972180 28 100.0 32 TAGGAGCCGG ............................ AATGCATCAATCTCTTTATCTGCAATGGCCTT 1972240 28 100.0 32 CAATGGCCTT ............................ ATTCACGAAAGAAGGAATAGAGCATGTCACAA 1972300 28 100.0 32 CATGTCACAA ............................ TTGTTGTCGAAATGGTGAATTCGGTACAAGTC 1972360 28 100.0 32 GGTACAAGTC ............................ AGTCAGAATTAAAATAAACGATTTAAATTGGT 1972420 28 100.0 32 TTAAATTGGT ............................ GCTAGCAACTAAGAGCGCGCTAACTTTGGTGG 1972480 28 96.4 ACTTTGGTGG ................A........... CACCTCCAGTGAATGTTTTAACAGGTGTCATA ========== ====== ====== ====== ========== ============================ 21 28 32 GTTCACCGCCGAATACGCGGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.50,-6.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [257,557] Score: 0.18/0.18 # # Final direction: F [1.05,0.55 Confidence: LOW] >NC_017567 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1235953 36 100.0 30 TCAATTAGCT .................................... TGCCTAATGTTTCAGATGCTAAACCTAAGG 1236019 36 100.0 30 AAACCTAAGG .................................... TTAAATATTTCACTTTCAAAAGAAAAAAAT 1236085 36 100.0 29 AGAAAAAAAT .................................... GTCAGCGAGGAGAAAAAGGCAAGACTGGT 1236150 36 100.0 30 CAAGACTGGT .................................... ACTTCGTAGACTACTTTTGTTACTTTATCT 1236216 36 100.0 31 TACTTTATCT .................................... CGCAAAAGCGAGGGCATTTGTCTTATCTTAA 1236283 36 100.0 30 CTTATCTTAA .................................... TTAGAAAAGAACCAACATTCGCTACACTTA 1236349 36 100.0 30 GCTACACTTA .................................... AACAGACGGCTATAGTCTGCCAAATTCAGA 1236415 36 100.0 30 CAAATTCAGA .................................... TACTAACTCAGCTTGCAGAGGGTCTTGTTT 1236481 36 100.0 30 GGTCTTGTTT .................................... TACTAACTCAGCTTGCAGAGGGTCTTGTTT 1236547 36 100.0 30 GGTCTTGTTT .................................... AAATTTTAGGGAATAACGGTAAGACCCGCT 1236613 36 100.0 30 AAGACCCGCT .................................... AACTATACTGATGATTAAGCCAATGTAAAG 1236679 36 100.0 30 CAATGTAAAG .................................... AACCTGCCTAAGTCGCTACAAGAAAAGATT 1236745 36 100.0 30 AGAAAAGATT .................................... CAAGAATTTAGACCTTGGGCTATTAGAAAG 1236811 36 100.0 30 TATTAGAAAG .................................... CAAAACGTGGTTATTTAGTGTCAGATAGTC 1236877 36 100.0 30 TCAGATAGTC .................................... TCTTTGTTAGGATAAACGACTAATTTTTCT 1236943 36 100.0 30 TAATTTTTCT .................................... TCTGAACAGCAATCACAACCTCAAGCGCCA 1237009 36 100.0 30 TCAAGCGCCA .................................... CCCAAGCAACACAAAAGGGACAGGTAAGAA 1237075 36 100.0 30 CAGGTAAGAA .................................... AACATTACTTATTGGTGGCTTATTTATTGG 1237141 36 100.0 30 TATTTATTGG .................................... ACAGTTAGATAACTTTGGAATCTTGCCGAA 1237207 36 100.0 30 TCTTGCCGAA .................................... TAAGATTCACAATACCCCAAGTTCCTAAGC 1237273 36 100.0 30 GTTCCTAAGC .................................... TTAACTTTATACATCTCTTCACGAAAATGT 1237339 36 100.0 ACGAAAATGT .................................... CTCGTAGAC ========== ====== ====== ====== ========== ==================================== 22 36 30 GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.89%AT] # Reference repeat match suggestion: R [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 97% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [0.00,-2.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [381,104] Score: 0.18/0.18 # # Final direction: R [0.18,0.87 Confidence: MEDIUM] >NC_017566 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2466805 28 100.0 32 NNNNNNNNNN .C.AC........A.............. TTAAAGCCGCGTGTGCGGCTATTCAGATTTAC 2466865 28 100.0 32 NNNNNNNNNN ............................ TGATCGAGTACAGCGGCATTGCCGAGTTAACG 2466925 28 100.0 32 NNNNNNNNNN ............................ TTACGATTGCTTTTTTAGCGCCCTTTGAATCT 2466985 28 100.0 32 NNNNNNNNNN ............................ ACTGGGTTTACTGCTGGCGTCGGGGTGGCTGT 2467045 28 100.0 32 NNNNNNNNNN ............................ GAATACATCTTCCGCACCCAACGAGCCGCGGC 2467105 28 100.0 32 NNNNNNNNNN ............................ AGTAGCGGTTTACGCTCACCCGTTGGCACTAT 2467165 28 100.0 32 NNNNNNNNNN ............................ CCGTTTGTGGCTACAGGGAAATGCTCACGGCG 2467225 28 100.0 32 NNNNNNNNNN ............................ AATCTTAGTCGTGTTTTAGATTTTAATTGCGA 2467285 28 100.0 32 NNNNNNNNNN ............................ GGTAAACTAGCTGAACCGCTAGCGGATAACGT 2467345 28 100.0 32 NNNNNNNNNN ............................ TCTTGCGCCCAAGCGGTTTATCGTTAACAACT 2467405 28 100.0 32 NNNNNNNNNN ............................ ATCAATCGTAGCTTCATCGCCATTCTTGATTA 2467465 28 100.0 32 NNNNNNNNNN ............................ CCAGAATCTACGTTCGACGAAATAGCTAATGT 2467525 28 100.0 32 NNNNNNNNNN ............................ CCACAGGTATCGATTACAGAGTAAGCCTCCAA 2467585 28 100.0 32 NNNNNNNNNN ............................ CTTTATCGTCCGTTGTTGACTGTCATAATTGC 2467645 28 100.0 32 NNNNNNNNNN ............................ TAGAGCGTGGTCGCAATCTTATATGCCAGTAC 2467705 28 100.0 32 NNNNNNNNNN ............................ TTAAAATTTTAGGGTCATTCGGTAATGCTGAA 2467765 28 100.0 32 NNNNNNNNNN ............................ GTGCAGGTTAACGAAGTGGTGCTTGAGCCAAA 2467825 28 100.0 32 NNNNNNNNNN ............................ ATGACAATGGCGCGGCCAGAGTTAGGGCGAAT 2467885 28 100.0 32 NNNNNNNNNN ............................ AACAAGTTGAGCGCTCTGTCGCTCAATTAATC 2467945 28 100.0 32 NNNNNNNNNN ............................ TATAATGCCCTCGATATTACGCAAAACAAAAT 2468005 28 100.0 32 NNNNNNNNNN ............................ ACTGCGCACAATGTATATTAATTAGTCTGCTA 2468065 28 100.0 32 NNNNNNNNNN ............................ TGGGCGAATATCGCTCACAATGTGAGTGTGGT 2468125 28 100.0 32 NNNNNNNNNN ............................ TTGCATGTGGTGAAAAGTGGAAAGACCAACAA 2468185 28 100.0 32 NNNNNNNNNN ............................ CAATCAGCGCAACAGCGACCAGCACAAAATCA 2468245 28 100.0 32 NNNNNNNNNN ............................ GGCACTATGGGAAAACGTGCCGCTAACTTTGA 2468305 28 100.0 32 NNNNNNNNNN ............................ AGGTCAGTGCCTTCACTCTCGGTGTAGTGTTA 2468365 28 100.0 32 NNNNNNNNNN ............................ TGCAAAGATGACCACAAACGTTACATTCTATC 2468425 28 100.0 32 NNNNNNNNNN ............................ ACCCACCAAAGAAAGTCTTTTAGAAAAGAAAC 2468485 28 100.0 32 NNNNNNNNNN ............................ CATCAACTTTTTTATCTTCAAGAGAAGGTAAA 2468545 28 100.0 32 NNNNNNNNNN ............................ AATGTTGAGTATGTGGATAAGAGGTTTTTAGT 2468605 28 100.0 32 NNNNNNNNNN ............................ TTCTTGCAAAATGCGCTTTATCTAAAATCAAT 2468665 28 100.0 32 NNNNNNNNNN ............................ AGGCACAAATAATAGTCCGCAACTCAGCTATT 2468725 28 100.0 32 NNNNNNNNNN ............................ GATTAACCCTTTTGAAGTTGTCTTAGCTCCTT 2468785 28 100.0 32 NNNNNNNNNN ............................ AAAATATATGAAATTAAGTAGCCGACAAAAAA 2468845 28 100.0 32 NNNNNNNNNN ............................ CTGTGTACTCGACCATCTGCCCAGCGTTGCGA 2468905 28 100.0 32 NNNNNNNNNN ............................ CGTTATACGCGCTATCCCCCCATAAATTTTTA 2468965 28 100.0 32 NNNNNNNNNN ............................ ACCAAACGATCACTGATAAAAAGTTTATTCAA 2469025 28 100.0 32 NNNNNNNNNN ............................ AATTAATGGAAAAAGGTAACAACTCCATTGAA 2469085 28 100.0 32 NNNNNNNNNN ............................ CATAGGCGATTCTAAGTCCTGAGAATCTAAAT 2469145 28 100.0 33 NNNNNNNNNN ............................ ACAGAGGGGATAGGCGGGGTATCTAACCGCACA 2469206 28 100.0 32 NNNNNNNNNN ............................ ATGGATCTGAACCGCAAGAAGATAATGCAGAA 2469266 28 100.0 32 NNNNNNNNNN ............................ GTGGCTCAGTGCCAACAAACAGGCGATCTAAC 2469326 28 100.0 32 NNNNNNNNNN ............................ GGAACTGATTATAACTATCGACTGATTTACGA 2469386 28 100.0 32 NNNNNNNNNN ............................ ATGAAAACGCAAAGGGCATGCCGTCAATCAAT 2469446 28 100.0 32 NNNNNNNNNN ............................ GCGATAGTGTGGGCAATTCATTATTAAGAATA 2469506 28 100.0 32 NNNNNNNNNN ............................ AAAAAATCTATCATGGAAAGCGACAACTTTAA 2469566 28 100.0 32 NNNNNNNNNN ............................ AAAAAGAAATGAAATGCAAACTAAAACTTAAA 2469626 28 100.0 32 NNNNNNNNNN ............................ CACTAAACTTCCAACTCTAGAGCACGCGCTAA 2469686 28 100.0 32 NNNNNNNNNN ............................ CCATGTCAGACATGATGGCTCGCCAGATGTTA 2469746 28 100.0 32 NNNNNNNNNN ............................ GGCCGAGTGCATAGCGATAGCATCTTGATCAT 2469806 28 100.0 32 NNNNNNNNNN ............................ AAGTCACTAAAACATTACAAACTTCATCTGGT 2469866 28 100.0 32 NNNNNNNNNN ............................ CAGTTGATACGAGCATAATGATTCGCAAAAAA 2469926 28 100.0 32 NNNNNNNNNN ............................ GCATCGGCCATTTTTTTACCGTCGGTTTTAAA 2469986 28 100.0 32 NNNNNNNNNN ............................ AGTCATACAGCTTTAGTTGCCTATATCAATAC 2470046 28 100.0 32 NNNNNNNNNN ............................ ACCCCGTCAATAACTCGATAACTTGTGGTTCT 2470106 28 100.0 32 NNNNNNNNNN ............................ CGCTATAAAAATCAAGCATTTCAGACAATCGA 2470166 28 100.0 32 NNNNNNNNNN ............................ GAGTGAATGCACTATTACTTTCTATCTTAGTT 2470226 28 100.0 32 NNNNNNNNNN ............................ AATATTTCTAAGGTTCACCAAAAAGCATTCAA 2470286 28 100.0 32 NNNNNNNNNN ............................ AATGAGCTTGTATCTGCATTAGACGATGACCA 2470346 28 100.0 32 NNNNNNNNNN ............................ CTTACAAATGCAAAGAGTAGCCGTAAGTCAAA 2470406 28 100.0 32 NNNNNNNNNN ............................ ATGGCCGATAAGTTTGGCTTAAGTACCGTTGA 2470466 28 100.0 33 NNNNNNNNNN ............................ ATGCAGTTTGCCTTTGCAATCCAGTTTGATACA 2470527 28 100.0 32 NNNNNNNNNN ............................ CGTAAAAGATATCGATAATGTCAGTGCAATAG 2470587 28 100.0 32 NNNNNNNNNN ............................ GAGTATTTAACATGGCTTTACCTGCGATTTTA 2470647 28 100.0 32 NNNNNNNNNN ............................ CTGTTACAGCAATGCCCGAGATACCAAAAAAA 2470707 28 100.0 32 NNNNNNNNNN ............................ ATAAACCTTGGCTATGTGAGTGCTACCCGAAC 2470767 28 100.0 32 NNNNNNNNNN ............................ GTAAATTCCAAAGACGGACAGTTTCTATTTTA 2470827 28 100.0 32 NNNNNNNNNN ............................ TTGGTCTATTTGGCTTTATAAACTTGTAAAAA 2470887 28 100.0 32 NNNNNNNNNN ............................ CTGCGCAATGACCCGCGCTTAGTTGTGTTAGT 2470947 28 100.0 32 NNNNNNNNNN ............................ AAAAAAGCCGGTAGCATGGCGAGCAGGTTATA 2471007 28 100.0 32 NNNNNNNNNN ............................ ACAACAAAAACTGTACGTTTAATGCAGTTACT 2471067 28 100.0 32 NNNNNNNNNN ............................ ATGATGATTATTCGTCTAGCTATGAGCTAGTT 2471127 28 100.0 32 NNNNNNNNNN ............................ TCAGTTACTAAAACTATAAGAGACTTACTTAC 2471187 28 100.0 32 NNNNNNNNNN ............................ ATCAATTGAGTAAAGCCCTAGCTCTTACACTA 2471247 28 100.0 32 NNNNNNNNNN ............................ TCGTTTATTCATGTTAATCACTCCTTCATTAA 2471307 28 100.0 32 NNNNNNNNNN ............................ TATCGGTCATTATTTTCACACCCATTCTTTAA 2471367 28 100.0 33 NNNNNNNNNN ............................ ATGACAAGTCTTCATTTAAATCTATCGGCTTGA 2471428 28 100.0 32 NNNNNNNNNN ............................ GAGATTCACGCTTTGATGTGAAATTTCCAAGC 2471488 28 100.0 32 NNNNNNNNNN ............................ TAGCAACAGAAACCTGTTGAGTATTAGTAGAA 2471548 28 100.0 32 NNNNNNNNNN ............................ GGTGATCACTTGCACGGGCGCCCAACTCGATA 2471608 28 100.0 32 NNNNNNNNNN ............................ ATTGTTGATGGTCATGTCTTGCAGGGCGTAAA 2471668 28 100.0 32 NNNNNNNNNN ............................ TAATGACTTCTCGACTTACTTCTTTACTCGTT 2471728 28 100.0 32 NNNNNNNNNN ............................ CCGAAGCGCCACCGAATATTTGTTGTGCTGTT 2471788 28 100.0 32 NNNNNNNNNN ............................ GAGTCGATAAGTTAGCTTCACATATTCACAAC 2471848 28 100.0 32 NNNNNNNNNN ............................ ACTGGTCGAGAGCATCATAGAGATTGGTGTCA 2471908 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 86 28 32 TTTCTAAGCCGCCTGTGCGGCGGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-9.50,-10.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [240,132] Score: 0/0.18 # # Final direction: R [0,1.42 Confidence: HIGH] >NC_017566 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================================================ ====== 3065886 64 100.0 16 CGATGCCTTC ................................................................ TTCATTCGATGCCTTT 3065966 64 100.0 16 CGATGCCTTT ................................................................ TTCATTCGATGCCTTT 3066046 64 100.0 CGATGCCTTT ................................................................ ========== ====== ====== ====== ========== ================================================================ 3 64 16 CAGGCACGCTACCGATCCGCGTGGCGGCCCGAGGCCTTCGGCGTCCGCTTAACGAATGAAACTT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [12,11] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-16.70,-16.50] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [56.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [431,608] Score: 0/0.18 # # Final direction: F [0.64,0 Confidence: HIGH] >NC_017566 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 731079 28 92.9 32 GTTGGTGACA --.......................... ATGGTGCTCTCCCGTTTCTTTGCTGCTTGCTA 731139 28 100.0 32 CTGCTTGCTA ............................ ATATTTTCAATGCCAGCGTATATAGAATTAGT 731199 28 100.0 32 TAGAATTAGT ............................ TCTGATTTATATGAAGCCTATGACACAAGACA 731259 28 100.0 32 ACACAAGACA ............................ TTCTCCTATGATAGAGCGCTGGGTTTACTCTG 731319 28 100.0 32 GTTTACTCTG ............................ AGTTACACGATAAAGACCCGCGAGAATGGCTT 731379 28 100.0 32 AGAATGGCTT ............................ CCATAAATCCGAATATATTGCCATCGGTGCGA 731439 28 100.0 32 ATCGGTGCGA ............................ ATTTAGAAGCTTTTGAAAATCCCAATCACGAA 731499 28 100.0 32 CAATCACGAA ............................ ATTTTGCATCAGCTTTCAGATTTAGAAGCAAA 731559 28 100.0 32 TAGAAGCAAA ............................ TTGAAGCGCCCATGCGGCATATCCCTAATGAC 731619 28 100.0 32 CCCTAATGAC ............................ AAGAATCTGGATAAAAGACTTCATCAGTTGAA 731679 28 100.0 32 ATCAGTTGAA ............................ AATCCAGCAAAACCACTTAGTCAGTCACACTT 731739 28 100.0 32 AGTCACACTT ............................ ATGCAATCGATCCGGCAGATGATTCCATTTTA 731799 28 100.0 32 TTCCATTTTA ............................ GAAACACTCCTAAACCAGTTTCCCCCCATCTT 731859 28 100.0 32 CCCCCATCTT ............................ TGTCGGCAGCCAAGCGTATTGATGCCATTAGC 731919 28 100.0 32 TGCCATTAGC ............................ CGGATCCAAGTGCATCATAAAACGTGATAGCA 731979 28 100.0 32 CGTGATAGCA ............................ GCCACCGCTGGAGCCTCTGAAGCTGTAATTGC 732039 28 100.0 32 CTGTAATTGC ............................ CGTTAATGGCATAGGTCTGTTGACCATATACT 732099 28 100.0 32 ACCATATACT ............................ TAAGTAAGAACTCAGCGCGGGTGACGATATCA 732159 28 100.0 32 GACGATATCA ............................ TTTCAAAAATAGGGCTAGAATGAACTCAAATA 732219 28 100.0 32 AACTCAAATA ............................ CACTGCTTGTTTCTGAAGATTGCGGCGTTCTT 732279 28 100.0 32 CGGCGTTCTT ............................ CCATTGTCGTTATTAGCATAAAACCTCGAAGA 732339 28 100.0 32 ACCTCGAAGA ............................ AGATAAATTAATTGATTCGGAAAATGGACAAA 732399 28 100.0 32 AATGGACAAA ............................ GTAAATTCCAAAGACGGACAGTTTCTATTTTA 732459 28 100.0 32 TTCTATTTTA ............................ TGACGTCGTGCATAGACACCTCAGATATTCGA 732519 28 100.0 32 AGATATTCGA ............................ CTTGTTTTACGTGCAAAACAATTAATAGAAGA 732579 28 100.0 32 TAATAGAAGA ............................ CTTGTTTTACGTGCAAAACAATTAATAGAAGA 732639 28 100.0 32 TAATAGAAGA ............................ ACTGGTCGAGAGCATCATAGAGATTGGTGTCA 732699 28 100.0 ATTGGTGTCA ............................ TGTAGAATAA ========== ====== ====== ====== ========== ============================ 28 28 32 TTTCTAAGCTGCCTGTGCGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [61.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [695,233] Score: 0.18/0.18 # # Final direction: R [0.18,1.42 Confidence: HIGH] >NC_017574 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1137444 29 100.0 32 NNNNNNNNNN ............................. CCGGCTCCCTTGCCGTAGGCGCCCCAGTTGGC 1137505 29 100.0 32 NNNNNNNNNN ............................. GCTTCCGTGTGCAGCACACTGATCAGGCCAGC 1137566 29 100.0 32 NNNNNNNNNN ............................. CATCGGTGAAAGAGCATTCTTGACGGGCTGAG 1137627 29 100.0 32 NNNNNNNNNN ............................. ACTCATCGCCTCCCCAGGCTTCGCGTTGTGCA 1137688 29 100.0 32 NNNNNNNNNN ............................. TACGGCGTGGGCGTCTGGCAGCAGCAGAACGC 1137749 29 100.0 33 NNNNNNNNNN ............................. TTCTACCTACTGTTCGTCTTGCCGGTTGTCGTC 1137811 29 100.0 32 NNNNNNNNNN ............................. CTGGACGGGTTCATCCAATTTTTCCGGCAGCA 1137872 29 100.0 32 NNNNNNNNNN ............................. GTCGGCGTCTAAGCCCCTGCCGCGCAAGGCGT 1137933 29 100.0 32 NNNNNNNNNN ............................. ACACTGCGCCAGCACCGCCCCCCGATTCCACC 1137994 29 100.0 32 NNNNNNNNNN ............................. GACTTGAACACCGAGGCCTGGGCCCAGGTCAA 1138055 29 100.0 32 NNNNNNNNNN ............................. CCCTGCCTCAACATCTTCAGCGCTGTAGTACT 1138116 29 100.0 32 NNNNNNNNNN ............................. GCTGTGCTGCTCGCGGCCTAGCAACTCCGGTC 1138177 29 100.0 32 NNNNNNNNNN .................A........... CGAGCGAGGTGGGCCTTGTTGACCTGGCCGAG 1138238 29 100.0 32 NNNNNNNNNN ............TT....A.......T.. GTTCAGGAGTCGAGCGACTTCCTGTCCCGCAT 1138299 29 100.0 32 NNNNNNNNNN ............T................ ATGAGCGGGTTACCCGTCGCGGCGGCTTTTAT 1138360 29 100.0 32 NNNNNNNNNN ........T...TAC.........C..T. CCCGGCGCCGGCGGGCTGAGCGGTGTGAGCCT 1138421 29 100.0 1 NNNNNNNNNN ........................CT... NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 17 29 32 GTGTTCCCCGCGCCTGCGGGGATGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [63.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [70,126] Score: 0/0.18 # # Final direction: F [1.18,0.37 Confidence: MEDIUM] >NC_017573 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 501095 28 100.0 32 NNNNNNNNNN ............................ AGGTGCATTTTGTTGCTGCCATCTGAGTTCTG 501155 28 100.0 32 NNNNNNNNNN ............................ GTCCACGATCTTTTTGTCGTCCGTGTTTACTG 501215 28 100.0 32 NNNNNNNNNN ..................G......... GATGCGCTGGCTGTGGAGAATGCGGTGCTGAA 501275 28 100.0 32 NNNNNNNNNN .............C.............. GTACAGTTATTGACAGAACTCCGAGAGGGCGC 501335 28 100.0 33 NNNNNNNNNN ..T..........C.............. CGGCAGCGTTGCAACCAGTACGCGCCCAGTGAA 501396 28 100.0 32 NNNNNNNNNN ..T..........C.............. GCTGGGCATGGCTGCAGAAATGGAGTCGATGT 501456 28 100.0 1 NNNNNNNNNN ..T....A.....A....C.T..CA... NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 7 28 32 GTGCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 92% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [189,426] Score: 0.18/0.18 # # Final direction: F [1.65,0.45 Confidence: MEDIUM] >NC_017567 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1581055 32 100.0 34 NNNNNNNNNN GA.G............................ ATGACATCCTTGACGGACATGCCAAAATCAGAAC 1581121 32 100.0 36 NNNNNNNNNN ................................ CAAGTAATCAGTTGAGAGCAGGCAGTGGATTACAAT 1581189 32 100.0 36 NNNNNNNNNN ................................ AGAGATAAAGAATTAACAGAAAGGCAGGTTTATAAA 1581257 32 100.0 34 NNNNNNNNNN ................................ ACTTCGTGCTCTTCGTCGATTTTACAGATAAAAG 1581323 32 100.0 33 NNNNNNNNNN ................................ TAATTGTGTGATAGGTAGAGGTAGTGGTAAAAC 1581388 32 100.0 34 NNNNNNNNNN ................................ TTTTAACAATTAAAAATTAAGGAGATATTAAAAT 1581454 32 100.0 34 NNNNNNNNNN ................................ ATGAATAACGAAAAATATGTAAGCTTTACTTTCA 1581520 32 100.0 34 NNNNNNNNNN ................................ GCGTACTAGTCTATAATAGTCTCATAAGCTAAAC 1581586 32 100.0 35 NNNNNNNNNN ................................ CAAGTTTTACATACACAGGCTTTTTATAATACCAT 1581653 32 100.0 33 NNNNNNNNNN ................................ GCTAACGGATGTATAGCTACTTGTCGTATTTTT 1581718 32 100.0 34 NNNNNNNNNN ................................ CAGATGAATTATTGCAAAATTTACGTGATGACTT 1581784 32 100.0 36 NNNNNNNNNN ................................ AATACGTGGACACATGTAAAAGTAAAAAGAATATTA 1581852 32 100.0 34 NNNNNNNNNN ................................ GTCGCAAATGTGAAGAGAGTTGTTGAGACGTAAG 1581918 32 100.0 34 NNNNNNNNNN ................................ GGAAACTCCACCCAGTAACCTTCTTCTTCTTTGT 1581984 32 100.0 34 NNNNNNNNNN ................................ GAAGAAAAAAAATGAGTTTTATAACAAGGTAACT 1582050 32 100.0 33 NNNNNNNNNN ................................ TAAAAATCCAGTTACTGCAGATAGTGTTAGGTG 1582115 32 100.0 34 NNNNNNNNNN ................................ TCTGTTTCACCCCTCTTGAATTGTTTGTAAAAAA 1582181 32 100.0 36 NNNNNNNNNN ................................ CCTGATGTAATTGGTGATTTTCGTGATATGCCTTTT 1582249 32 100.0 34 NNNNNNNNNN ................................ GCATTAGATTTTGTTTTTTGGATGTCAATCTCTG 1582315 32 100.0 34 NNNNNNNNNN ................................ ACTAAATCTTCCTTAATTTTTCCGCCGCAGTTAT 1582381 32 100.0 35 NNNNNNNNNN ................................ AAAAAGTTTTATAATATGCTTTTTTAGCATAATTT 1582448 32 100.0 33 NNNNNNNNNN ................................ TATCTTTTTGCATGTTGTAAGCTTCTTCTGGTA 1582513 32 100.0 34 NNNNNNNNNN ................................ AAGCGCAAATAGCTTTAGCACATAGGACAGATAC 1582579 32 100.0 34 NNNNNNNNNN ................................ CGTTTTAGATAATTTAGATGATTTAATCGAAGAT 1582645 32 100.0 35 NNNNNNNNNN ................................ CTTGGCTTAAGCCATATCATGTTTTATCAAATGGC 1582712 32 100.0 34 NNNNNNNNNN ................................ AATACCTGCTAAAACAGTCAAAACAGATAGCGTT 1582778 32 100.0 35 NNNNNNNNNN ................................ GCTGGTCATCAAATTCAATCTTTTTTTCTTGCTCT 1582845 32 100.0 38 NNNNNNNNNN ................................ TTTCGTATTTTAGTTACCGTGACGCGCAACAATATTAC 1582915 32 100.0 34 NNNNNNNNNN ................................ CACACTATTCTTTCAGGAACATGAACCGTGATTG 1582981 32 100.0 1 NNNNNNNNNN ................................ NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 30 32 34 ATTTCAATCCACTCACCCGCGAAGGGTGAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [9,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.50,-4.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [127,150] Score: 0/0.18 # # Final direction: R [1.01,4.91 Confidence: MEDIUM] >NC_017569 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 623819 19 100.0 46 NNNNNNNNNN ................... ACCAATAAATACAGCTTATTTGCTCCTAAGTTGGGACTGCTCTCAT 623884 19 100.0 48 NNNNNNNNNN ................... CAACGGAATAAACATATTTTTCCGTTTGTGAGTTGGGACTGCTCTCAT 623951 19 100.0 47 NNNNNNNNNN ................... TAAAAAATAGAATAAGAAATATTCCTATCAGTTGGGACTGCTCTCAG 624017 19 100.0 47 NNNNNNNNNN ................... CATTTCAGAGTTGCAGATTAAATTGGTTGAGTTGGGATTGCTCTCAG 624083 19 100.0 47 NNNNNNNNNN ................... TTTAGCTTCATTCTCTGTACCTTTTAGAATGTTGGGACTGCTCTCAG 624149 19 100.0 47 NNNNNNNNNN ................... AGATTACCACTTTCATCTACAAAGTTCTTAGTTGGGACTGCTCTCAT 624215 19 100.0 47 NNNNNNNNNN ................... AAAGGCTTATCGCCTCTATATTTTCAAAATGTTGGGACTGCTCTCAT 624281 19 100.0 47 NNNNNNNNNN ................... CTGTTGTTGTAAATATAATAGGTCCTATTGGTTGGGACTGCTCTCAT 624347 19 100.0 47 NNNNNNNNNN ................... CCTTTTCCTCATCACCTTCGTAGATGCAGAGTTGGGACTGCTCTCAT 624413 19 100.0 47 NNNNNNNNNN ................... TTCATTTATACTTCTAGGTAACTTAGTTAAGTTGGGACTGCTCTCAC 624479 19 100.0 47 NNNNNNNNNN ................... AAAGGAACGCTACTCGTTGTAGGAAGCACAGTTGGGACTGCTCTCAC 624545 19 100.0 47 NNNNNNNNNN ................... TAAGATTTCTGGATTTTCGTATATGTTGCTGTTGGGACTGCTCTCAC 624611 19 100.0 47 NNNNNNNNNN ................... TGCTTTGTTCTTCTCCTTCTTTTGTTGCCGGTTGGGACTGCTCTCAC 624677 19 100.0 47 NNNNNNNNNN ................... AGCCACAGCGTTTGATGGTTCTACTGCTATGTTGGGACTGCTCTCAC 624743 19 100.0 1 NNNNNNNNNN ................... NNNNNNNNNN ========== ====== ====== ====== ========== =================== 15 19 47 TTTGAAGGGTATTCACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.16%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [65.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [82,1261] Score: 0.18/0.18 # # Final direction: F [0.27,0.18 Confidence: LOW] >NC_017568 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 684166 36 100.0 29 NNNNNNNNNN .................................... TTTTAATCACTATACGATTATGAAAGCCT 684231 36 100.0 30 NNNNNNNNNN .................................... GAACAGTTTGATTTACCTTATCGCTATATT 684297 36 100.0 29 NNNNNNNNNN .................................... TGTTTCTGTTTGTTACTTTTATTCTGTAC 684362 36 100.0 29 NNNNNNNNNN .................................... TGAACATTACCGAACCCTCTTGTGATTAA 684427 36 100.0 30 NNNNNNNNNN .................................... GCGAACAACGGTATGCTTACGATGTTAGGT 684493 36 100.0 29 NNNNNNNNNN .................................... TCGCATTAATCAAGAATCAAAAGGGTTGC 684558 36 100.0 30 NNNNNNNNNN .................................... AAAAAGCCAGTACAAGGTTCTATGGTTTCA 684624 36 100.0 30 NNNNNNNNNN .................................... ATTAAGAACAATATAAATGTATCGATTTCA 684690 36 100.0 30 NNNNNNNNNN .................................... GCAATGGATCAATTGAAGGCTCGTCAACAA 684756 36 100.0 31 NNNNNNNNNN .................................... GTGTGTCATCAGACTTTACACCTTCAAATAC 684823 36 100.0 29 NNNNNNNNNN .................................... GAACTCTTAAAGTATCTTTTAGGACACTT 684888 36 100.0 30 NNNNNNNNNN .................................... AAAGATTATGCCATCTTCAGTTACTTTAAC 684954 36 100.0 30 NNNNNNNNNN .................................... GATGAGAGGTGTAAAAGCACAATTGCATGA 685020 36 100.0 29 NNNNNNNNNN .................................... TATACGTGCAAACGGTTCTCTTTTAATTT 685085 36 100.0 30 NNNNNNNNNN .................................... CGGCACAGATTGTGTGATTTGTTGACCTGC 685151 36 100.0 30 NNNNNNNNNN .................................... TCAAAAGTATTTCGTCGAGATGGAGCGACT 685217 36 100.0 30 NNNNNNNNNN .................................... TGAAGATTTTCCACGCCAATGTATTTTTAT 685283 36 100.0 29 NNNNNNNNNN .................................... TAAAATCAGAAACAAAAGGGCAAGCGGTT 685348 36 100.0 29 NNNNNNNNNN .................................... CATTACCTTTGTTTGCGTTGTTTGATTCT 685413 36 100.0 29 NNNNNNNNNN ............................A....... GTTAACTGAACTCGAGTGTTGGCGCTTGA 685478 36 100.0 30 NNNNNNNNNN ............................A....... ACAGGCTTAAAGAATCATTACAGTTTGCTA 685544 36 100.0 30 NNNNNNNNNN ............................A....... TTGACCGTGCAAAAATTAATCACAAGGCGC 685610 36 100.0 30 NNNNNNNNNN ............................A....... GTTATGATGTTTGGCGATATGGGTCGTCGT 685676 36 100.0 1 NNNNNNNNNN T........T................ACATC.TC.A NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 24 36 29 GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.22%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [182,169] Score: 0/0.18 # # Final direction: F [0.41,0 Confidence: MEDIUM] >NC_017569 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================================== ====== 1449555 38 100.0 39 NNNNNNNNNN ...............A...................... TTCTTAATTGTAATGCTTTAGAAAGTAGTTGTTGCGAAC 1449632 38 100.0 39 NNNNNNNNNN ...............A...................... TATCCCATCGCACATCTGTTTTATTTTGTCGTTGCGAAC 1449709 38 100.0 39 NNNNNNNNNN ...............A...................... TTTATTAAATAATTTAATTAGCTGAAAATCGTTGCGAAC 1449786 38 100.0 39 NNNNNNNNNN ...............A...................... GAGGTGTTGTCATATCTCAATCTCGTCTATGTTGCGAAC 1449863 38 100.0 39 NNNNNNNNNN ...............A...................... TACTTCGTTTATTAGTTTTATTGCAATGTTGTTGCGAAC 1449940 38 100.0 39 NNNNNNNNNN ...............A...................... TAGATACATCTCTTTATCTTCGTGTAAAATGTTGCGAAT 1450017 38 100.0 39 NNNNNNNNNN ...................................... GTCTTTGAGGTAAGGTTTTGTCAAATCCCAGTTGCGAAT 1450094 38 100.0 39 NNNNNNNNNN ...................................... TAATGGAGATTATAATATCCAGATACAAACGTTGCGAAT 1450171 38 100.0 39 NNNNNNNNNN ...................................... TCTATCGAAGTGTTTAAAAACACTTGATTTGTTGCGAAT 1450248 38 100.0 39 NNNNNNNNNN ...................................... GATATAGTATCAGATGAACCGACAACGGACGTTGCGAAT 1450325 38 100.0 39 NNNNNNNNNN ...................................... TGATTGACTCTATTTTCTCCTGTGCAGATAGTTGCGAAT 1450402 38 100.0 39 NNNNNNNNNN ...................................... TTATTAAAAGTTTTCCGATACTTCCTATGTGTTGCGAAC 1450479 38 100.0 1 NNNNNNNNNN ..................................T..T NNNNNNNNNN ========== ====== ====== ====== ========== ====================================== 13 38 39 TATCACAAAGATAGTGAAAATTGAAAGCAATTCACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:71.05%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-1.20,-1.30] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [118,3] Score: 0.18/0.18 # # Final direction: F [5.09,0.27 Confidence: HIGH] >NC_017574 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1127636 29 100.0 32 NNNNNNNNNN ............................. CATATCTACCTGAACGAAACTAAGCGGCTCAT 1127697 29 100.0 32 NNNNNNNNNN ............................. CGCGCCGAGCGTCCGTTCCGCCCGTGGCAACA 1127758 29 100.0 32 NNNNNNNNNN ............................. CTCGGCGCGCTTGATGGTGCGGCGTCGCGGGA 1127819 29 100.0 32 NNNNNNNNNN ............................. GCCAGACCCCACATCGCGAGAATCCCAGCCCC 1127880 29 100.0 32 NNNNNNNNNN ............................. AAATATCTGAAGCAACTGGGCCTGGGTGCTGC 1127941 29 100.0 32 NNNNNNNNNN ............................. ACGATGCGGCCGGGCATGGTTCATCGAATGAC 1128002 29 100.0 33 NNNNNNNNNN ............................. CCAACAACGAACTGGCTACTGCCATTCGTCGGC 1128064 29 100.0 32 NNNNNNNNNN ............................. CTCGCTTTGAACATGTGGGAGAGCGAACGCAG 1128125 29 100.0 32 NNNNNNNNNN ............................. GCTTCATATTCATCGGCGGGGTGCATGTCTTC 1128186 29 100.0 32 NNNNNNNNNN ........T.................... GCGCTGGCGAAGGGTCAGTCGCAGCCGGTCAC 1128247 29 100.0 32 NNNNNNNNNN ............C................ CGCCTGAAGCACGGCGGCAATGCGGTGCTGCG 1128308 29 100.0 32 NNNNNNNNNN ......T...................... ACGGGTTGGGCACCGCTGTATGAACACTGGCT 1128369 29 100.0 32 NNNNNNNNNN .............A..T............ GGTGCGGGCGAGTTCGCGCTGCCGGGCCTGTC 1128430 29 100.0 1 NNNNNNNNNN ..A........TCA..........TG... NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 14 29 32 GTGTTCCCCGCGTGGGCGGGGATGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-13.50,-12.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [58.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [90,269] Score: 0.18/0.18 # # Final direction: F [1.05,0.55 Confidence: LOW] >NC_017576 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1477291 36 100.0 30 ACCTTGACCA .................................... GTAACGTCCGAATCATTGGGGTCTGGAAAG 1477357 36 100.0 30 GTCTGGAAAG .................................... TCTAAACTTTTTAGATGAAACAGCTAGACT 1477423 36 100.0 30 CAGCTAGACT .................................... ACAAACTATAGTTTAACAGCTAAGGAAGTT 1477489 36 100.0 TAAGGAAGTT .................................... TTAAGTCGCC ========== ====== ====== ====== ========== ==================================== 4 36 30 GTTTTACGGTTACTTAAATCTTGAGAGTACAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:69.44%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [223,461] Score: 0.18/0.18 # # Final direction: F [0.37,0.18 Confidence: MEDIUM] >NC_017576 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1477620 37 100.0 29 CGAGCAAATA ..................................... TTGAATAAATGGTTTCAAAAGCATTATCA 1477686 37 100.0 29 AGCATTATCA ..................................... AAAATGGGTGGGGCTATTCCTAGCCAAAT 1477752 37 100.0 29 CTAGCCAAAT ..................................... TTATAAAAACGTACATCTTCATTACGTCG 1477818 37 100.0 28 CATTACGTCG ..................................... CAGACCGCATTTCATTCCAAAGCGGTGG 1477883 37 100.0 AAAGCGGTGG ..................................... CTCAAATCGT ========== ====== ====== ====== ========== ===================================== 5 37 28 TGTTTTACGGTTACTTAAATCTTGAGAGTACAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.27%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [552,66] Score: 0.18/0.18 # # Final direction: F [0.55,0 Confidence: HIGH] >NC_017576 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1484496 36 100.0 30 NNNNNNNNNN .................................... TTAACAGTTAGTTTATTATTAACAATATTA 1484562 36 100.0 30 NNNNNNNNNN .................................... CGTGTGCCATAAGATTGGTGTTGAGGTGTT 1484628 36 100.0 30 NNNNNNNNNN .................................... TGACCAGCAGTTAGTTTATCCTGTTTTGTG 1484694 36 100.0 30 NNNNNNNNNN .................................... ACCCCATGACGAATTATATCCCTCATTACT 1484760 36 100.0 30 NNNNNNNNNN .................................... GTAAGTTTATCCCATACTCTAAATTTTGGT 1484826 36 100.0 30 NNNNNNNNNN .................................... AATGTTTGCAAGAGGTTAACACCTGCTTGT 1484892 36 100.0 30 NNNNNNNNNN .................................... TTATTTTTTATGTCGCTGTCAATGTTAGCT 1484958 36 100.0 30 NNNNNNNNNN .................................... AGATGAAGATTTCCCTTTACCACCACTTAA 1485024 36 100.0 30 NNNNNNNNNN .................................... ACTCAATTTGAAGTTGAATGTTGCCAAGTG 1485090 36 100.0 30 NNNNNNNNNN .................................... TTGAACTCAAACAGACATTTGAAGAATGGT 1485156 36 100.0 30 NNNNNNNNNN .................................... TTGAACTCAAACAGACATTTGAAGAATGGT 1485222 36 100.0 30 NNNNNNNNNN .................................... TTGAACTCAAACAGACATTTGAAGAATGGT 1485288 36 100.0 29 NNNNNNNNNN .................................... TGTATAAAAGCTTTAACACTAACGTTGTT 1485353 36 100.0 30 NNNNNNNNNN TG.................................. AAGTCGCCACCAGAGTTAAAAGTTTTAGCT 1485419 36 100.0 30 NNNNNNNNNN .................................... AGAGCTGAAATGTAGTTAAATGATTTTCCG 1485485 36 100.0 30 NNNNNNNNNN .................................... GCGTTTTAAGCTCTTGCATATAATCTTCTG 1485551 36 100.0 30 NNNNNNNNNN .................................... GATAGATGCATCGCCAACCGCCCAAGTTAA 1485617 36 100.0 30 NNNNNNNNNN .................................... GTGCATCGTTGATAAATTGCGTTTGTTGAT 1485683 36 100.0 30 NNNNNNNNNN .................................... TATGGTTACCACACCTCTGATGATTGTGCT 1485749 36 100.0 30 NNNNNNNNNN .................................... TAGTCAGTAGCTCCTTTTTTGTTATTATTT 1485815 36 100.0 30 NNNNNNNNNN .................................... AAATTAATTTTCACAGTAAAAACCTACAGC 1485881 36 100.0 30 NNNNNNNNNN .................................... GCCGCTTTCTGAACTTCGACACGTACAGCT 1485947 36 100.0 30 NNNNNNNNNN .................................... ACCTCCGCCAATCAATGTGCCTAGTGGTTT 1486013 36 100.0 30 NNNNNNNNNN .................................... ACTCTAATAGCCAAAGTACGGTCATTTGAT 1486079 36 100.0 30 NNNNNNNNNN .................................... ACAATTCATGTTTTTAACCTGAAAATCAGC 1486145 36 100.0 30 NNNNNNNNNN .................................... AGGTGAGGTTGATAATATTGAAACAATCAA 1486211 36 100.0 30 NNNNNNNNNN .................................... TAACGACCTTTGATTTCTGTCAATTGACCT 1486277 36 100.0 30 NNNNNNNNNN .................................... AGTGTATTTAGTCGGATCCGTGCTAGCAGT 1486343 36 100.0 30 NNNNNNNNNN .................................... GTAAAAGATACCTTTTGAGTAACTGTTTCA 1486409 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 30 36 29 GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-5.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [144,133] Score: 0/0.18 # # Final direction: R [0.27,0.37 Confidence: LOW] >NC_017581 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 712332 36 100.0 30 NNNNNNNNNN .................................... ATGAGGTCGAGAAGGAAAAACGATATGCAG 712398 36 100.0 30 NNNNNNNNNN .................................... ATCCTCAATAGCATTGACAAAGTCTTTTCT 712464 36 100.0 30 NNNNNNNNNN .................................... TCAATCTTCCTGTCTTTGAAATATTTCTTT 712530 36 100.0 30 NNNNNNNNNN .................................... TTGGAATTTAACGTTTGAAGAACGGAAGAA 712596 36 100.0 30 NNNNNNNNNN .................................... GTGGTCTTTCGTGGGTGCTGCGCTCTGGTT 712662 36 100.0 30 NNNNNNNNNN .................................... ACTAAAATCATTTTCAACGAGTTGAGAGAC 712728 36 100.0 30 NNNNNNNNNN .................................... TATATTCGCGAGGGTGATATAGTCGTGGTG 712794 36 100.0 30 NNNNNNNNNN .................................... CATATATGATAGTTTGTCAACACCTTTTAT 712860 36 100.0 30 NNNNNNNNNN .................................... TAAATGGGTTATGCTGTTCAATATGCGTCC 712926 36 100.0 30 NNNNNNNNNN .................................... AAACTTGCCAGCAATCGGAATGTAAAGGCC 712992 36 100.0 30 NNNNNNNNNN .................................... TTAGACCCTAAAGAGGTAGAGCGCCATATA 713058 36 100.0 30 NNNNNNNNNN .................................... AAAAGGTTGGCTAGTGTAATAAGTTCGTCA 713124 36 100.0 30 NNNNNNNNNN .................................... TACCATTGTTTCTCTCCACCGTGGAAGGTT 713190 36 100.0 30 NNNNNNNNNN .................................... GGCATTAGACAGATACATTGATAGCCAACT 713256 36 100.0 30 NNNNNNNNNN .................................... AAGAAGCAGCAAGATGCATCAAACACCGCA 713322 36 100.0 30 NNNNNNNNNN .................................... TGAAAATCTCACTAGTCCATTAGTGCGGTT 713388 36 100.0 30 NNNNNNNNNN .................................... ATCACCCAACTTTCTTGTGCTTTCTAAGTG 713454 36 100.0 30 NNNNNNNNNN .................................... GCTTAGCTGTCCAATCCACAAACGTGGATG 713520 36 100.0 30 NNNNNNNNNN .................................... GCTAACTTAAGCAAGCAGTACGAAAAGCAG 713586 36 100.0 30 NNNNNNNNNN .................................... AAAAAAGATGGTATCAATTATCTAGAATTG 713652 36 100.0 29 NNNNNNNNNN .................................... CTCTTAAGGTCATTTCAGTGTCTTGGTTA 713717 36 100.0 30 NNNNNNNNNN .................................... ATTGTCTATTACGACAACATGGAAGATAGT 713783 36 100.0 30 NNNNNNNNNN .................................... TACACTAGTAGTTGTGTCCCAAATTTTAGA 713849 36 100.0 30 NNNNNNNNNN .................................... ACTAAAATCATTTTCAACGAGTTGAGAGAC 713915 36 100.0 30 NNNNNNNNNN .................................... TATATTCGCGAGGGTGATATAGTCGTGGTG 713981 36 100.0 30 NNNNNNNNNN .................................... TAGGGATATGAAGCCCAAATTGTTGCAATG 714047 36 100.0 31 NNNNNNNNNN .................................... TTTCCCGGTGTATAGATTGGCTCTATAGTCT 714114 36 100.0 30 NNNNNNNNNN .................................... TATATATAAGTTTCCGAAAGTAGACGAACC 714180 36 100.0 30 NNNNNNNNNN .................................... CATTATTAAACCCATGCTTTTTACCACACT 714246 36 100.0 30 NNNNNNNNNN .................................... CATTATTAAACCCATGCTTTTTACCACACT 714312 36 100.0 30 NNNNNNNNNN .................................... AGCCGATAGTTAAATCAACTGATTGTGGAT 714378 36 100.0 30 NNNNNNNNNN .................................... CGTGCTACAAATCTCTTTACGACAATTTAG 714444 36 100.0 30 NNNNNNNNNN .................................... TTTTTTTGATACATTTAAGGGCGCTTTCAT 714510 36 100.0 30 NNNNNNNNNN .................................... ACGAGAGTCTTTCAGTCTATCCATTGCCTG 714576 36 100.0 30 NNNNNNNNNN .................................... CATTTTCCGTTTTTTTTGTCTCTACCCCAT 714642 36 100.0 29 NNNNNNNNNN .................................... AGCTGTGATAACACGAAGAGAACTCTAGA 714707 36 100.0 31 NNNNNNNNNN .................................... AAACATTGATGAGTATTATTGAAAAACTTCA 714774 36 100.0 30 NNNNNNNNNN .................................... GGGTCAAGGTATAAGATAGAGTTTTCTATA 714840 36 100.0 29 NNNNNNNNNN .................................... TAGGTACTTTAACCTGACCAGATACAATC 714905 36 100.0 30 NNNNNNNNNN .................................... CCTCAAAGCTTAAAATTGGGCTGAAGTAGA 714971 36 100.0 29 NNNNNNNNNN .................................... AGGTTGTAACAAAAAAGATGCTAACAAGA 715036 36 100.0 30 NNNNNNNNNN .................................... TAATGCTACATCTCAAAGGATGATCCCAGA 715102 36 100.0 1 NNNNNNNNNN ..................................GT NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 43 36 29 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:69.44%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [63,43] Score: 0/0.18 # # Final direction: F [0.41,0.37 Confidence: LOW] >NC_017581 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1452282 36 100.0 30 GATAACAAAA .................................... TCTCTCTCATAGATATCCTTGTGTTCTTTC 1452348 36 100.0 29 GTGTTCTTTC .................................... ATCGTCAATACAGCGACCAGCGACCACGA 1452413 36 100.0 GCGACCACGA .................................... TTCTCTTGCTACCAGCTTCAAGGCTTTTTT ========== ====== ====== ====== ========== ==================================== 3 36 29 GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-5.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [85,172] Score: 0.18/0.18 # # Final direction: R [0.27,0.55 Confidence: MEDIUM] >NC_017581 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 969817 36 100.0 39 AAGATATGGG .................................... CTTGATTCTAACGCTACTTCTAAATAAGCGTTAGCAATG 969892 36 100.0 36 GTTAGCAATG .................................... AGTTCTAAAGCATTCATCATATGTTTATGTTCTTTA 969964 36 100.0 35 ATGTTCTTTA .................................... TTCCAAAATTAATTCTTTGATGTCGTTATTTATTA 970035 36 100.0 36 TTATTTATTA .................................... ATCCAGTTCTGCAAAGAACAGCATAGAGGTTTTACC 970107 36 100.0 37 AGGTTTTACC .................................... TTTTAATTCTTCTAAGTTATCGCTGAATGGATAGAAC 970180 36 100.0 37 TGGATAGAAC .................................... ACTGTTTCTGTTTGCTTGTTTGACCAAATCCAGTTAA 970253 36 100.0 38 ATCCAGTTAA .................................... AATTGGATAGCGCAGGCTACCAAACTTCTAAGATGATT 970327 36 100.0 37 TAAGATGATT .................................... TCTTGTTGGCGTTTTTCAATAACTTTCTTATCAATCA 970400 36 100.0 35 TTATCAATCA .................................... TTCCAAAATTAATTCTTTGATGTCGTTATTTATTA 970471 36 100.0 36 TTATTTATTA .................................... ATCCAGTTCTGCAAAGAACAGCATAGAGGTTTTACC 970543 36 100.0 37 AGGTTTTACC .................................... TTTTAATTCTTCTAAGTTATCGCTGAATGGATAGAAC 970616 36 100.0 37 TGGATAGAAC .................................... ACTGTTTCTGTTTGCTTGTTTGACCAAATCCAGTTAA 970689 36 100.0 38 ATCCAGTTAA .................................... AATTGGATAGCGCAGGCTACCAAACTTCTAAGATGATT 970763 36 100.0 37 TAAGATGATT .................................... TCTTGTTGGCGTTTTTCAATAACTTTCTTATCAATCA 970836 36 100.0 36 TTATCAATCA .................................... TGAGAAACATAGAAAACATGGTATGAATTATCATAG 970908 36 97.2 36 ATTATCATAG ......G............................. CCATATACTCTAGCATTTCCATACACTTTAGCATTT 970980 36 100.0 TTTAGCATTT .................................... TTAACGAAGTTGTCATCAATCATTACTCCTTGCCTG ========== ====== ====== ====== ========== ==================================== 17 36 36 GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [53.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [102,204] Score: 0/0.18 # # Final direction: F [0.78,0.27 Confidence: MEDIUM] >NC_017582 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 561748 32 100.0 33 NNNNNNNNNN ................................ GTACAAAATAGTGTGTTAATATAGTATCATAGC 561813 32 100.0 32 NNNNNNNNNN ................................ CAGAGATTGATATCCAAAAAACAAATCCAATG 561877 32 100.0 35 NNNNNNNNNN ................................ CTACCAAGATATTTGTAACAATCTTGGAATGGATT 561944 32 100.0 34 NNNNNNNNNN ................................ CTGAAGCAATAGCTAACAATCCCGCTTTACAATT 562010 32 100.0 33 NNNNNNNNNN ................................ AAGCTTTTATATGGCTGATAAACTGCTTGGAAA 562075 32 100.0 33 NNNNNNNNNN ................................ AAGGTATTGAGGAAAAATTGCCACTGGCAAAAA 562140 32 100.0 34 NNNNNNNNNN ................................ ATTGCTAACACTAGTAAAATTACCTCGTAGTGTC 562206 32 100.0 33 NNNNNNNNNN ................................ ATGGTTAATGTCCAAAATTAAAAGGTGTGATTG 562271 32 100.0 34 NNNNNNNNNN ................................ AAATCAAGGGTTGAAAACTTTGTAATTTTGGCAT 562337 32 100.0 34 NNNNNNNNNN ................................ CATTGAATCGCCAGCTACTTTTGCAATAGTATCA 562403 32 100.0 35 NNNNNNNNNN ................................ AGCTTTTAATAAGTTGTCAAGACTAACAGTACCAT 562470 32 100.0 35 NNNNNNNNNN ................................ ACTAAAATATGCAAAATAATGAATAAAAAGGAGAG 562537 32 100.0 33 NNNNNNNNNN ................................ AAAGGAAGATGAGTACTTGGCTAGACGACTTAA 562602 32 100.0 33 NNNNNNNNNN ................................ CTAAAGAGGTGACGGAATGAATAAAAGCGAAAT 562667 32 100.0 34 NNNNNNNNNN ................................ TCAGAAACAAATAGCTGAACAAATGAAGATTTCC 562733 32 100.0 33 NNNNNNNNNN ................................ GTGTATCGCAGACATGCATTGCCTTGCGTTTCG 562798 32 100.0 33 NNNNNNNNNN ................................ TGCGAGATTAACTTACTGCACATGGATTTTATC 562863 32 100.0 36 NNNNNNNNNN ........C..TGC.................. CTAAAAGACTTTCTGATTTTAACCAACCCTGACAAC 562931 32 100.0 1 NNNNNNNNNN ........CCAT.C.................. NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 19 32 33 GTCTCGCCTTTCATGGGCGAGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [6,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.10,-2.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [149,393] Score: 0.18/0.18 # # Final direction: F [5.55,0.55 Confidence: HIGH] >NC_017583 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 795764 37 100.0 35 CCACTAGAAA ..................................... ATATAACCCCCCAAAGGGGTTCTTGGCGCTCATAG 795836 37 100.0 37 GCGCTCATAG ..................................... CGATGAAGTGGTGGATAGGCTGTTGGAATTGTATGAT 795910 37 100.0 38 ATTGTATGAT ..................................... ATGCTTCCTCTGCATGAGATACCGCATCTTTTTTCCAG 795985 37 100.0 36 TTTTTTCCAG ..................................... TCTGTATAATCATATCAATACAACCCTCGAGAAATA 796058 37 100.0 38 TCGAGAAATA ..................................... TCTAATAGCGATTACGACTCGCGCGGGGTCTTAATAAG 796133 37 100.0 38 TCTTAATAAG ..................................... TCACATTGTGTTTCCTCGGAGATGACAGTCTGCTCATC 796208 37 100.0 36 TCTGCTCATC ..................................... AGTGCACGTACAAGGTGAGGATTTTGGCGATTTAAA 796281 37 100.0 36 GCGATTTAAA ..................................... CACAGTACGCGTTGATAATGCAGATCTTATATTTGT 796354 37 100.0 39 TTATATTTGT ..................................... TCCCCCTGGCCCTGGCGGTTTGTCTTGCCGACATGCCCA 796430 37 100.0 38 GACATGCCCA ..................................... CATGCCTTGGTGATGTGGTGCGTGTGTCGCGGATGGTC 796505 37 100.0 38 GCGGATGGTC ..................................... CCCAACGAGTCCCACCCAGGTGGCATGCTACCCATGTC 796580 37 100.0 37 TACCCATGTC ..................................... GCAATATACCGAGCGCTCGAACACAAACCAACTCCAG 796654 37 100.0 35 CCAACTCCAG ..................................... TAAAAGCTGTGATGCCAACAGATACATCATTCGTA 796726 37 100.0 37 ATCATTCGTA ..................................... CTGGCTGATAAGCAGCTCGATAAATGCAATAGTAACG 796800 37 100.0 37 AATAGTAACG ..................................... CTCTACGACGATAGCTGATGTCAGCGCTGCCATCGCC 796874 37 100.0 37 TGCCATCGCC ..................................... TTGGAGGATTAATTACAGGTGCAGCCGGCACTATTGC 796948 37 100.0 37 GCACTATTGC ..................................... TCAGATCCCACAGAAACATAATACTCTCCTCCTGTAC 797022 37 100.0 39 CCTCCTGTAC ..................................... GGCCACGCCCCCGTGAGACGTAGCCCTCTGAGTGATGTA 797098 37 100.0 37 GAGTGATGTA ..................................... TTATAGTAAGGTTGTATATGGTATGGTGCCTCATCGG 797172 37 100.0 37 GCCTCATCGG ..................................... ATATCGCATTGTGCCTTTTCAGACACCACCATCTGCT 797246 37 100.0 37 ACCATCTGCT ..................................... ACCCCCAGTCGTCTGCGGCTGCGCCAAACGCTCCAGG 797320 37 100.0 41 ACGCTCCAGG ..................................... TCCGATATGATCCGCCGCGTATCGATGCGCCTATCAAGAAT 797398 37 100.0 TATCAAGAAT ..................................... AGCCCCCTCT ========== ====== ====== ====== ========== ===================================== 23 37 37 CTTTCAGTATCCTCTAGCGGATCGTGGGGACTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [7,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [51.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [624,245] Score: 0.18/0.18 # # Final direction: F [0.82,0.37 Confidence: MEDIUM] >NC_017583 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 807201 37 100.0 34 NNNNNNNNNN ACAGTTCCT.TGAA.GA.A..G...A........CGT GGGGCACCGAGCGGACTCCCCCGCTTCCTCACCA 807272 37 100.0 39 NNNNNNNNNN ..................................... GATACCAGACGTGCAGGGTGTATGCGTATAACCATCTAC 807348 37 100.0 39 NNNNNNNNNN ..................................... TAATGCGGCGTTAAAGTCGGTATTGATGCCGTTCTATCT 807424 37 100.0 36 NNNNNNNNNN ..................................... GTCGTGTCGATGGGGCGGTTATCGTGCCCACGGGAA 807497 37 100.0 37 NNNNNNNNNN ..................................... TATTCTCATATATCAAACAGTCAATAAAGAAATTCTT 807571 37 100.0 37 NNNNNNNNNN ..................................... GACATACCGCGACGATATCAGACTGTACAGGCCGTAT 807645 37 100.0 37 NNNNNNNNNN ..................................... TATTCATCACTTCGACCCATCCTTCGCCCGGATGTGT 807719 37 100.0 37 NNNNNNNNNN ..................................... CTGACGATGACATCGCAGTGGTCTATTACGACGACGA 807793 37 100.0 40 NNNNNNNNNN ..................................... AGCTCGATATAAGCCTCGCTATTGCTCAGGCCGCAAAGGC 807870 37 100.0 38 NNNNNNNNNN ..................................... AGGCGCTTGGCGTGTACAGCTGCACAGTGTCCATGTCA 807945 37 100.0 37 NNNNNNNNNN ..................................... CAAAAGCAGGCAAAAGCAGCAAAAGATCTTTCAAATG 808019 37 100.0 37 NNNNNNNNNN ..................................... GTAAGGTAGTGCTCCTCAGCTAGTGCAAGTGCAGGTG 808093 37 100.0 37 NNNNNNNNNN ..................................... GAGGGCCACGCTCGCGTGAGGCGTAGCCCTCTGGGTA 808167 37 100.0 36 NNNNNNNNNN ..................................... ATGTAGGTGTGTAGCACCTGCTATATCACTGTATCA 808240 37 100.0 37 NNNNNNNNNN ..................................... ATAGATGCGATACTAGACATCGCGGGAGTTACCAGCC 808314 37 100.0 38 NNNNNNNNNN ..................................... GATGATGGAGGCTGCATGGTAATCAAACTTATTTGTGG 808389 37 100.0 36 NNNNNNNNNN ..................................... TACAGCACACCGGCGCGACTGGCCGCTCTGATGCGC 808462 37 100.0 37 NNNNNNNNNN ..................................... CGGCGGTGAAAAAAATATGCAGAAAATATGCGGATCA 808536 37 100.0 38 NNNNNNNNNN ..................................... CTTGCTGCTGGTGAGCTTATCTCATTTGGGCTCCCAAC 808611 37 100.0 36 NNNNNNNNNN ..................................... TAGCCCTCTGGGTACGGCGTCCGTTAGCGATTAATG 808684 37 100.0 35 NNNNNNNNNN ..................................... CTTTCTGAACTCAAAGAAAGATACATCGCAAGGAG 808756 37 100.0 35 NNNNNNNNNN ..................................... TTATATGCTCTCCAGAGAGCAGCTGCTCGTTCTAC 808828 37 100.0 37 NNNNNNNNNN ..................................... AAGTCATCGATAAACTCGGAAATATGGCGCAAATCCC 808902 37 100.0 42 NNNNNNNNNN ..................................... TATACATAGTCGATGATGACGATGAGGTAATCTCTGATCAGA 808981 37 100.0 38 NNNNNNNNNN ..................................... AAGCATTGTATCTATTATCTTGCGGCGATAATTGATGT 809056 37 100.0 38 NNNNNNNNNN ..................................... GCATAGTCGATGATGACGATGAGGTAATCTCTGATCAA 809131 37 100.0 37 NNNNNNNNNN ..................................... TTGCGGCCGTGTATACATCTCCAGCGCCCCGGCAGCT 809205 37 100.0 39 NNNNNNNNNN ..................................... GTATATCACATTGCGCCTTTTCAGACACTACCATTTGGT 809281 37 100.0 36 NNNNNNNNNN ..................................... TGGAGGATTAATTACAGGTGCAGCCGGCACTATTGC 809354 37 100.0 37 NNNNNNNNNN ..................................... GTGGGCCATCAAGTACGATCACTTGTTTGGACTGCGC 809428 37 100.0 42 NNNNNNNNNN ..................................... TGCGGATATTAATTTCTCCTTATCTACTGTCTTATATGTATC 809507 37 100.0 37 NNNNNNNNNN ..................................... ACCGTGAGATTCGCCATTCGAGCTCGTGCGGTTCGAA 809581 37 100.0 1 NNNNNNNNNN ..................................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 33 37 37 CTTTCAGTATCCTCTAGCGGATCGTGGGGGCTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.00,-4.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [61.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [823,179] Score: 0.18/0.18 # # Final direction: F [0.82,0.78 Confidence: LOW] >NC_017584 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1363865 37 97.3 40 GAGTAATCCA ..................A.................. GATTGGGATAGCTCCCTCCACCCTCCGGCCTCTGGAACAC 1363942 37 100.0 44 TCTGGAACAC ..................................... GATATGCCCTTGCACGCCACCATCCTTCGGCCGGACGGGACCGC 1364023 37 100.0 38 ACGGGACCGC ..................................... CCGCAAACTGAAACCCCCACCGAGTTTTCCTTGCTGAT 1364098 37 97.3 39 CCTTGCTGAT ..............A...................... GTTGACATGGCGAAGGGTGCGCAGGATTACCGCCCCGAT 1364174 37 100.0 39 CCGCCCCGAT ..................................... CTACAACGCCAAGAGCGGCCTCGTTAAGCTGGGGTTCCC 1364250 37 100.0 41 TGGGGTTCCC ..................................... GACCAGCTTGTTCTTCGCCCCGATGATCCCGACTTTCGCGG 1364328 37 100.0 38 ACTTTCGCGG ..................................... ACGTCCGGGGCGCTCGCGCCCAGGCTTTCCTGGAAGGG 1364403 37 100.0 CCTGGAAGGG ..................................... AGCCGGTTCT ========== ====== ====== ====== ========== ===================================== 8 37 39 GTTTCAGTCCCCTCGATGGCGGGGCATAGGGTGCGAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.70,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [48.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [179,210] Score: 0/0.18 # # Final direction: R [0,1.42 Confidence: HIGH] >NC_017584 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1580591 29 96.6 32 GCGAATTTCG ........T.................... ATCGCCGACGCCGCCCTGGTCGAGGCTAACCG 1580652 29 100.0 32 AGGCTAACCG ............................. GCTCGACACAACGAACGCGCGACTGGCCGAAA 1580713 29 100.0 32 CTGGCCGAAA ............................. ATGTAAAGGCCGATCGCCGCAGCCAGGGCGGA 1580774 29 100.0 32 CCAGGGCGGA ............................. ATCGCCAGCGGCAAACACCACATCACGCAAGC 1580835 29 100.0 32 TCACGCAAGC ............................. GGATCCCTAAAGCGGATATCGGCGAGCACGAT 1580896 29 100.0 32 CGAGCACGAT ............................. GCTGCCGTTTTGGAAAGTGCGGGTCTCTGGGT 1580957 29 100.0 32 GTCTCTGGGT ............................. CTGGCGACAAGAGCCACAATTGACGCCCCAAG 1581018 29 100.0 32 ACGCCCCAAG ............................. TGGAGTGCCAACCCCTGGGTCGCCGCCGTGAC 1581079 29 100.0 32 CCGCCGTGAC ............................. ATTTCGATTTCAGCCGTCTTCGTTGCGTGAAC 1581140 29 100.0 32 TTGCGTGAAC ............................. TCCCGTTGTCTCTGAGAGGACGTTAAGTCGCA 1581201 29 100.0 32 TTAAGTCGCA ............................. CCGCTCGGCACGGGGGCGGGGGCGGGTTGTAG 1581262 29 100.0 32 CGGGTTGTAG ............................. GAGCCGCTGCGCTCGCAAATGCTCAACGGGGA 1581323 29 100.0 32 TCAACGGGGA ............................. ACGAATACCTGCGCCCGGTCAATCGGGATGAC 1581384 29 100.0 32 TCGGGATGAC ............................. GAGTGGCGGGCCGGAGCGATTGATATCGATGG 1581445 29 100.0 32 ATATCGATGG ............................. TCCCCATTGGCGATGCAGAGGGCGCACAATGG 1581506 29 100.0 32 CGCACAATGG ............................. TGCGCGCCAGTTTGCGAGGATGAGGGCGATCA 1581567 29 100.0 32 AGGGCGATCA ............................. GACGCCGGCGAGATGTCCATGAAGGACTACGT 1581628 29 100.0 32 AGGACTACGT ............................. TACACCTTTGTCCCAAACGGCACGAAGGTGAT 1581689 29 100.0 32 CGAAGGTGAT ............................. GGTCGCGCAGCGTGATGAGGTCAGTCATGATC 1581750 29 100.0 32 AGTCATGATC ............................. GCGCGTCGGCGGACCAAGCCAGCAGAGACGAG 1581811 29 100.0 32 CAGAGACGAG ............................. GTTCGCTGGGCAGGCCATGATGGGGGATTGGA 1581872 29 100.0 32 GGGGATTGGA ............................. TTTGGTTTGGTTGCCCGACTGCGAATCAGCGG 1581933 29 100.0 GAATCAGCGG ............................. TCATCGACGG ========== ====== ====== ====== ========== ============================= 23 29 32 CGGTTCATCCCCGCGTGTGCGGGGAACAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [38.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1041,286] Score: 0.18/0.18 # # Final direction: R [0.18,1.05 Confidence: HIGH] >NC_017584 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 1694117 31 100.0 36 GCACATAAAG ............................... GCCCTCCGGCCAGACCGGAGACAGGTCCGGGGAGTG 1694184 31 100.0 33 CCGGGGAGTG ............................... TTTAGCGATGATCGCGAGGCCCCGGTCCTCCGG 1694248 31 100.0 33 GGTCCTCCGG ............................... TCTTTTCGCGCAGGCGCGGCGGATGAAGCGAGA 1694312 31 100.0 35 TGAAGCGAGA ............................... GCGCGGCGGTCGACGATCTGTTGCGCGCGCACCGT 1694378 31 100.0 33 CGCGCACCGT ............................... AACGGGTACTCGATTTAGCCCGCCGACGCGGGC 1694442 31 100.0 34 CGACGCGGGC ............................... TCGCGGGGGATGGTCAGTGCGCCAGGGACGTTGA 1694507 31 100.0 35 GGGACGTTGA ............................... CCAACCCGGACGTCGCCGCCGCCGTCAAACGCGGG 1694573 31 100.0 34 CAAACGCGGG ............................... CATACGCCGCGAGCTGCTTGGCTTCTCGCAGGCA 1694638 31 100.0 33 CTCGCAGGCA ............................... GATGGAACGGAAAAGTCCGATAAGGCTTGGCGC 1694702 31 100.0 36 GGCTTGGCGC ............................... TTTCTTTTCTCTGAGGATTTGCAAAAGCAATTCTTA 1694769 31 96.8 32 GCAATTCTTA ...............T............... AATCGCATGTGGTTTGATGATTGTGCCCCGAG 1694832 31 100.0 36 GTGCCCCGAG ............................... GCGCAGGCCGTTGTGGTCATGGAGACGCCAGCGGCC 1694899 31 100.0 33 GCCAGCGGCC ............................... AACAGCCTCTTCAAGCATCCGAGCTTGACCGCT 1694963 31 100.0 35 CTTGACCGCT ............................... CGTTAAGCCGGGAGCAGCGCCCGCAGCCGGCCAAG 1695029 31 100.0 33 GCCGGCCAAG ............................... GCCACACGACGAGCATTTTCGTCGGGGATGGGG 1695093 31 100.0 34 GGGGATGGGG ............................... CTCGGCTCTGACCTATGTTGAGGTCGGGGAGATC 1695158 31 100.0 34 CGGGGAGATC ............................... TGGGAGCGCGCCTTTGGTCGAGGCGGACTTTGAC 1695223 31 100.0 34 GGACTTTGAC ............................... GCGCGTCGCCCATTTTTTGGCCCAGGCCGCGCAT 1695288 31 100.0 36 GGCCGCGCAT ............................... CCGAGGTACGCGCTTCCAGCGCCGTGACCTTCGCCA 1695355 31 100.0 33 ACCTTCGCCA ............................... ACCAAGGCTTGCGCCAAGCCCCCGGCCCGGTCG 1695419 31 100.0 35 GGCCCGGTCG ............................... CTTTGGAGCCAGACGGAACCTACGCGGCGACCAGC 1695485 31 100.0 33 GGCGACCAGC ............................... ACAGGGCATTGTGCTCACTGACGAGCAGCGCGG 1695549 31 100.0 36 AGCAGCGCGG ............................... TCGGAGAAGAGCGCCGCTAAAACCGCGTTTTATTCA 1695616 31 100.0 33 GTTTTATTCA ............................... GCAGGACGTGGCCCGGGTGCGCCGGTACCGCCA 1695680 31 100.0 33 GGTACCGCCA ............................... ACGGCGGACTTGCCCGCCGACCGTTTTCCGATG 1695744 31 100.0 34 TTTTCCGATG ............................... GCCGTTCGTGGCTGCGCAGATCGCCTACATTCGG 1695809 31 100.0 34 CTACATTCGG ............................... GTTGGGTGCCCGTAGAAGAGGCCGCAATCGCCGC 1695874 31 100.0 32 CAATCGCCGC ............................... CCCCGGCTCGGCGTCCTCCCCCCACCCGTTGG 1695937 31 100.0 CACCCGTTGG ............................... TCCCCGGAGT ========== ====== ====== ====== ========== =============================== 29 31 34 GTTTCAATCCACGCCCCCGTGAGGGAGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [6,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.30,-5.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [36.7-38.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [228,195] Score: 0/0.18 # # Final direction: R [0.37,4.87 Confidence: HIGH] >NC_017584 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 198739 29 100.0 32 CGAGGAGGCC ............................. GAATCCCAAGGTTTCGCCTGAATCGACCCGCG 198800 29 100.0 32 TCGACCCGCG ............................. GCTGCCGGGGCGGACGAGGGCCGGGTGGATTA 198861 29 100.0 32 GGGTGGATTA ............................. AGATCGGTCCAGGCCCGACTGCCCAGATTGAC 198922 29 100.0 32 CCAGATTGAC ............................. CGATCACCCTGGAATATTTGCGCATGGGGGCG 198983 29 100.0 32 CATGGGGGCG ............................. ACTCACGATAGCAGTACCCGGTCGAGCCATCG 199044 29 100.0 32 CGAGCCATCG ............................. CCGACAATATTGGGAGCAAGCCGGTCATCGAG 199105 29 100.0 33 GGTCATCGAG ............................. ACCCCAGGCCGTTTGATTTTGCTCGCTGATCTG 199167 29 100.0 32 CGCTGATCTG ............................. TCCCGCCATCGCCCCCATGACCAAGTCAAGGG 199228 29 100.0 32 AAGTCAAGGG ............................. AGCCCCACGGCCTCGGCCTCAAGGGTCGCCAT 199289 29 100.0 32 GGGTCGCCAT ............................. AGCGAAAATCACCTATTGCGATCGTGATGAAG 199350 29 100.0 32 CGTGATGAAG ............................. TTCTGGTGATGGGGACCGCCGATCATTTCGGG 199411 29 100.0 32 TCATTTCGGG ............................. TCGTTAAGACGTTGCAATCGCGCGAACAGGCG 199472 29 100.0 32 CGAACAGGCG ............................. GGCGCCGGTGAAGTCGGCCTTCCAGCCTAAGG 199533 29 100.0 32 CAGCCTAAGG ............................. CGCAACAGGGTGTAACGCACCTCGCCTGACGC 199594 29 100.0 32 CGCCTGACGC ............................. CGGGCCCAGGATGACGGCGGAGCGCTGGAGGC 199655 29 100.0 32 CGCTGGAGGC ............................. GGGGCAGATGGGCGACTTCAGGGCGCTGCTGG 199716 29 100.0 32 GCGCTGCTGG ............................. AGGTCGGGCTGTCCGTTGAGGCGCTGCAGGAA 199777 29 96.6 32 GCTGCAGGAA T............................ CTCACGGTCAAGCACCAGACCCATCTCATGGG 199838 29 100.0 ATCTCATGGG ............................. TCATCAACGG ========== ====== ====== ====== ========== ============================= 19 29 32 CGGTTCATCCCCGCGCATGCGGGGAACAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [26.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [285,147] Score: 0/0.18 # # Final direction: F [0.78,0.27 Confidence: MEDIUM] >NC_017584 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================================== ====== 213822 38 100.0 52 AGAAGTCCGG ...................................... AGGTGGCCGAGGCCGGCTATCCAGTTGAGGCGGACTTTTATCGGAAGTGCGT 213912 38 97.4 39 GGAAGTGCGT .....................................T CCCGCCCCGCCGGCCAATCAGCCGACCGTGGAGCAGCGC 213989 38 100.0 36 GGAGCAGCGC ...................................... GGACTGCGTCGAAGATGATCTCCAGGGGCGTATGTT 214063 38 100.0 36 GGCGTATGTT ...................................... CCTTTAGCCGTTCTGCAGAAAAGCGCCTCTTTAGGC 214137 38 100.0 CTCTTTAGGC ...................................... GCCCCCTAAAA ========== ====== ====== ====== ========== ====================================== 5 38 40 GTTTCAATGAGGCCGAGGCATTACTGCCTCGGGAGACG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [8,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-15.30,-15.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [45.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [488,130] Score: 0.18/0.18 # # Final direction: R [0.45,5.28 Confidence: HIGH] >NC_017584 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2668113 37 100.0 38 AGAACCGGCT ..................................... GCGCCGGTGAAGTTGGCGCCGGTGCAATCGGCGCTCCT 2668188 37 100.0 38 CGGCGCTCCT ..................................... ACGCTGGCACTATACGGTGCGTGGTCCGAGAGCTCCGA 2668263 37 100.0 38 AGAGCTCCGA ..................................... GTCCTCATCGAAGTCCTCATCCTCGACCGGGGCACCCC 2668338 37 100.0 38 GGGGCACCCC ..................................... TCGAGGGATCCCATATCCAAAGCGCCGAACGAGTTGAA 2668413 37 100.0 36 ACGAGTTGAA ..................................... AAGCGTTGTCTGTCGGCAGGGCGCCGAGGACGGCAC 2668486 37 100.0 39 AGGACGGCAC ..................................... AAGCACTTTCGTAAGGTTCACTGGGGTTACGGCGGCAAT 2668562 37 100.0 39 CGGCGGCAAT ..................................... GCTTCGATCGCACGGATCCGATCCTTCAATCCAGTCCGG 2668638 37 100.0 38 TCCAGTCCGG ..................................... CACATGGCGTGAACCTTGCGCGCCAGCGGATTGGCCGC 2668713 37 100.0 40 GATTGGCCGC ..................................... CCGTCCTGGAAGAAGACAACCCATTGCGAGGGGGTCTCAT 2668790 37 100.0 43 GGGGTCTCAT ..................................... TCGAGCGGCGGGAATTGGCCCTCTTGGATGGGGGATTTTTCCA 2668870 37 100.0 35 GATTTTTCCA ..................................... TTGTTCTTGTCTTCATCCGAGGGTTTGTTTGTCTT 2668942 37 94.6 38 TGTTTGTCTT .........C...........T............... AGGGTGGTGAGGAATTCATAGCGGCTGTGCGTGGCCTT 2669017 37 94.6 37 GCGTGGCCTT .........C...........T............... CAACAGAAACGGTATCAGCCATGGTAACTACTCCCAC 2669091 37 94.6 38 CTACTCCCAC .........C...........T............... ATGGCTAATGAATGTATTGAACGTTTATTATCCAACAA 2669166 37 94.6 37 TATCCAACAA .........C...........T............... TCGGAGGTAACGCCATTGTCGGCGCCGTCGTCTTCGG 2669240 37 94.6 38 TCGTCTTCGG .........C...........T............... CTCCCAAGCCGCCACCAGGGCGGCTTTGGCGCGGGCGG 2669315 37 94.6 40 GCGCGGGCGG .........C...........T............... CCCGGGGGGTGTCGCGGTCTTAGTATTCCAGGATCCGCGC 2669392 37 94.6 39 GGATCCGCGC .........C...........T............... GGTGTCGGCGACCATGCGCTGATCATTGCCGGTCGGAAT 2669468 37 94.6 40 CGGTCGGAAT .........C...........T............... GAGGGAGAGCCCACCGTACTGAAAAGCGAGGTGGCGCATC 2669545 37 94.6 39 GTGGCGCATC .........C...........T............... TCGGCGGGCAACTCGAAGCAAAGGGCGCGGGTGGTGGTT 2669621 37 94.6 GGTGGTGGTT .........C...........T............... TACTCTTCGC ========== ====== ====== ====== ========== ===================================== 21 37 38 CTCGCAGCCTATGCCCCGCCACCGAGGGGACTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-8.10,-8.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [56.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [356,206] Score: 0/0.18 # # Final direction: F [0.64,0 Confidence: HIGH] >NC_017584 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2715965 37 100.0 36 TTAGGGGGCC ..................................... AGGTGTTACAGGAGTCTCAACGACTGGGGTTGTGGG 2716038 37 100.0 36 GGGTTGTGGG ..................................... TTCGTATTCCCATAGATCTTACCCGTGGTCGTAAGG 2716111 37 100.0 41 GGTCGTAAGG ..................................... CGGACGGGCAGCTTCAGATACTTCAGGGCACTCTCGTACCC 2716189 37 100.0 38 TCTCGTACCC ..................................... ACCGCGATTTCTTTCGCCTCTTCGAGCGAGGCGACGGG 2716264 37 94.6 AGGCGACGGG .......T...............A............. TCCTCTGACCC ========== ====== ====== ====== ========== ===================================== 5 37 37 GTCTCCCGAGGCAGTAATGCCTCGGCCTCATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [8,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-15.70,-15.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [131,318] Score: 0.18/0.18 # # Final direction: F [5.28,0.18 Confidence: HIGH] >NC_017584 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3524497 37 100.0 43 AGAACCGGCT ..................................... TCGAAATCACCTTCGTCATCCTCGACCGGGATATCCCGGACAC 3524577 37 100.0 39 TCCCGGACAC ..................................... GACCACGATCAAGCGCCCCAAGATGTGCTCGCAGACCAC 3524653 37 100.0 38 CGCAGACCAC ..................................... AACGCGGGGCCGTGCAGGCCGTTCGTCTCGGCGTCCAA 3524728 37 100.0 38 CGGCGTCCAA ..................................... TTCTATCCTTGGATTGAGTGGGGCGAGAAACCCGCCCG 3524803 37 100.0 40 AACCCGCCCG ..................................... CTGTAGGAGGCATAAAACTCTTCTCGAGTCAGGGTGTCGA 3524880 37 100.0 38 AGGGTGTCGA ..................................... CAAGTCAACGGCGAAAGCTCGCGCAAGTGTTTGACCAA 3524955 37 100.0 39 GTTTGACCAA ..................................... CTTCCTCGGGCTCCTCGGGGTCTTCGTCGAAGCCATCAA 3525031 37 100.0 39 AAGCCATCAA ..................................... ATTCTTCGGGTGAGGGATCCCAGGTGCCAAGAAGCTCGA 3525107 37 100.0 39 AGAAGCTCGA ..................................... CCCGAACCCCAGCTTAACGCGGCCGCTCTCGGCATTGTA 3525183 37 100.0 CGGCATTGTA ..................................... TTGTCATACCC ========== ====== ====== ====== ========== ===================================== 10 37 39 CTCGCAGCCCTTGCCCCGCTATCGAGGGGACTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [7,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.10,-11.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [51.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [373,234] Score: 0/0.18 # # Final direction: F [0.64,0.37 Confidence: LOW] >NC_017584 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 420333 29 100.0 32 NNNNNNNNNN ............................T TACTACACCGAGCCCCGCATTATCCGGGTGCG 420394 29 100.0 32 NNNNNNNNNN ............................. GCGCGGGCATCATCTGCCCCGCACACCATAGC 420455 29 100.0 32 NNNNNNNNNN ............................G TTTGGCGAATACCCCATGGTCCAAGGCGCTAT 420516 29 100.0 32 NNNNNNNNNN ............................. GACGCCGCGAACGTCCTGACCGAAGCCCTGGC 420577 29 100.0 32 NNNNNNNNNN ............................. TGGCGGCGGCGTTTCGCGCTGAAGGCGCCCTG 420638 29 100.0 32 NNNNNNNNNN ............................. GCCGCCGGGACCGGGGCGCAGGCGATCTACAA 420699 29 100.0 32 NNNNNNNNNN ............................. CTCGGCAATGCGAGGGATCACGTCGCCGGAGC 420760 29 100.0 32 NNNNNNNNNN ............................. CTACTACGCCCGACAGGCGATATTGGATAAGC 420821 29 100.0 32 NNNNNNNNNN ............................. TTAATCCCCGATCTCAGGGGGAGGCTGGAATG 420882 29 100.0 32 NNNNNNNNNN ............................. AACAGACGACAGCGGGATCATCCTGGCATCGA 420943 29 100.0 32 NNNNNNNNNN ............................. TGCGTAAGCTGCGTTCCTTGCTGGATTAGGGC 421004 29 100.0 32 NNNNNNNNNN ............................. AAGCCCGGGGTTTATGGAGAGCATACCATGAC 421065 29 100.0 32 NNNNNNNNNN ............................. CCCGGACGCCTTTTGGTGGACGACGCCGCAAA 421126 29 100.0 32 NNNNNNNNNN ............................. ATGACTGCATGACCGAGGCGCTTTATGCCGAG 421187 29 100.0 32 NNNNNNNNNN ............................. TCTAGGCCCCGGTACGCAGTGCTCACGCGTAC 421248 29 100.0 32 NNNNNNNNNN ............................. GACATCGACACGCCTCCGCCGACGACGGCCAC 421309 29 100.0 32 NNNNNNNNNN ............................. CGGGTAATCTCGCTGTGAAGGCTGACTTCACC 421370 29 100.0 32 NNNNNNNNNN ............................. CGGCCGAATGTTGCCCGCCCCTCCCCCTGTCC 421431 29 100.0 32 NNNNNNNNNN ............................. ACCACGGGGAATTCCCGATGCTCCGCCTCCTG 421492 29 100.0 32 NNNNNNNNNN ............................. GTGCGCGACAACATGGGGTGGGTGCGCGATCA 421553 29 100.0 32 NNNNNNNNNN ............................. ACGATCGGGTCTTTGCGCCAGTTCGGCGACCA 421614 29 100.0 32 NNNNNNNNNN ............................A TGTTCCGTCTGGCTCCAAGGTGTCGTAATCGC 421675 29 100.0 32 NNNNNNNNNN ............................. TTGCCGCGAATGCGGCGCCCCCCTGGCGGTCG 421736 29 100.0 32 NNNNNNNNNN ............................. GTGCTCTCCGCCATACCTTGGGTGGAGCAGAA 421797 29 100.0 32 NNNNNNNNNN ............................. GCCGTGCTCGATCGATGCGATCTCGGCAGTGA 421858 29 100.0 32 NNNNNNNNNN .........A...C............... TGCCGACCGCCTGAGGCGCGAGGCCGAGGTGA 421919 29 100.0 32 NNNNNNNNNN .........A...C............... ACCGCGCGGTCCTCCCTTCATTATCGATTTCA 421980 29 100.0 32 NNNNNNNNNN .........A...C............... CATGTCGCCCGCACAGCGGGAACTGGCCGCCC 422041 29 100.0 34 NNNNNNNNNN .........A...C............... GAGCACACCGAGGCGCTTGCCCGGGCGGCTGCGG 422104 29 100.0 32 NNNNNNNNNN .........A...C............... AGCCTTCTCATCTGGGCGGCAAAGCATGTTGC 422165 29 100.0 32 NNNNNNNNNN .........A...C..............G TGATGAATCTCCAGGATCGCCTTATTGCTCAG 422226 29 100.0 32 NNNNNNNNNN .........A...C............... GTGTGTGAACGGACAAAACACCGCCCTCTGCT 422287 29 100.0 32 NNNNNNNNNN .........A...C............... CTTCAAAAACCCGCGATTTCCGCCGCGATTGC 422348 29 100.0 32 NNNNNNNNNN .........A...C............... CGGCCAGGACAGCACATAAGCGGCCCCGCCGC 422409 29 100.0 32 NNNNNNNNNN .........A...C............... GTTGCTGTTCGTCAGGATCGCGCCGAGAAGCG 422470 29 100.0 32 NNNNNNNNNN .........A...C............... CCGCCCTTGTTCTGATAGGCGGACCAGATCGT 422531 29 100.0 32 NNNNNNNNNN .........A...C............... AGCCCCCGGAATTCCCGCTCACTTGCGGTGCC 422592 29 100.0 32 NNNNNNNNNN .........A...C............... GCCGTAATGCCGCAAGACCCCGGCTTGGCGCG 422653 29 100.0 32 NNNNNNNNNN ............................. ATCCAATCATCTGGCTCGCGGTTCGAGCCGCT 422714 29 100.0 32 NNNNNNNNNN ............................. TCGGCGGGAAGTTCATTTCGTGCATTGCGATT 422775 29 100.0 1 NNNNNNNNNN ............................A NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 41 29 32 GGTTCCCCCGCACTCGTGGGGATAGACCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-10.70,-6.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [59,230] Score: 0.18/0.18 # # Final direction: F [1.05,0.55 Confidence: LOW] >NC_017584 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 530188 36 100.0 30 TACGTCATGG .................................... CGGGTAGATAGGCGCAATCGGTTCTCGGAT 530254 36 100.0 30 GTTCTCGGAT .................................... GGCGAGCCGTGCGCACCGGTCCTCCCCCCA 530320 36 100.0 30 CCTCCCCCCA .................................... CATGAAAGGAATGCCCAGATGAGCAAATCC 530386 36 100.0 30 GAGCAAATCC .................................... TGATCCAGTCATCGCCCATCCCGGCCTGGG 530452 36 100.0 CCGGCCTGGG .................................... GTCACCAG ========== ====== ====== ====== ========== ==================================== 5 36 30 ACTCTACCATGGCGGTGTGGGACGGGGCCATGGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [7,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.70,-4.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [31.7-31.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [201,248] Score: 0/0.18 # # Final direction: F [0.74,0 Confidence: HIGH] >NC_017584 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 989382 32 100.0 34 NNNNNNNNNN ................................ AGCTAAATACAATAACGATAAAAGAAATACGGAT 989448 32 100.0 32 NNNNNNNNNN ................................ GCGTCGATCGCGGGCGCGGGCGCCTTGGCCGG 989512 32 100.0 34 NNNNNNNNNN ................................ ATCCAGGGGCCAGTCGCGCGAGACCTCCCGGCGT 989578 32 100.0 34 NNNNNNNNNN ................................ GGGCACGACGCCGTTGATCGCCTTGGCCACCGCC 989644 32 100.0 35 NNNNNNNNNN ................................ CTCGATCTCCCGACGCAGGGCTGTTTGCTCCTCGG 989711 32 100.0 35 NNNNNNNNNN ................................ CATACCGAGTTGGCGGAGGGCTTCGGGCACCACGA 989778 32 100.0 34 NNNNNNNNNN ................................ TGCAAATATCCGTGGCGCTGGCCAGCGCCAAAAA 989844 32 100.0 33 NNNNNNNNNN ................................ GGGAGATTGAGGGGCTGCAAAAGGTCCCCCGTC 989909 32 100.0 35 NNNNNNNNNN ................................ TTACTGCATCAAAATGCAGACGCCCTTGGCCTGTC 989976 32 100.0 32 NNNNNNNNNN ................................ CTTGCCCGCCCCGCCCGCCACCACCCATGGGC 990040 32 100.0 33 NNNNNNNNNN ................................ GCCCGCCAGAGAGGCCTGGAGCTAACGTGGACA 990105 32 100.0 35 NNNNNNNNNN ................................ TCTTGGGCCTCGGTGCTATCGACGCGGTCGACGTT 990172 32 100.0 35 NNNNNNNNNN ................................ GTACCCTCGCCCTTAAGAAGGTGGGCAAGGTTCCC 990239 32 100.0 34 NNNNNNNNNN ................................ AAGGCGTGCTCGATGCCGACGCCGGCGGACAGGA 990305 32 100.0 34 NNNNNNNNNN ................................ CGTTCTCGGTCTACATCGACCCCGAGGCGGATAC 990371 32 100.0 34 NNNNNNNNNN ................................ CCACCCATCTTGGCCAAACCACGATAGCCGGCTC 990437 32 100.0 35 NNNNNNNNNN ................................ ATCCGGAGCCGGGTCAGCGACAATCCGTATCTGGT 990504 32 100.0 34 NNNNNNNNNN ................................ GAGGATGACGGCGAGGACGAATCGCCGGAAGACG 990570 32 100.0 35 NNNNNNNNNN ................................ CGGCCCCGCCCTCCTCCCCTCCCCGGCGCGGTGCT 990637 32 100.0 33 NNNNNNNNNN ................................ CATCCGCTGGATGATCGTGGCCTTCATCGGCAT 990702 32 100.0 33 NNNNNNNNNN ................................ ACAACGGCCACGGTGACCTATGACGCCCTCGCC 990767 32 100.0 33 NNNNNNNNNN ................................ TCTTTTTCCGGGGCCAAGCTACGCCAAGTCACG 990832 32 100.0 34 NNNNNNNNNN ................................ TGGCGCAGTTGCTCTGCCTCGACCGTCCCGGCTT 990898 32 100.0 33 NNNNNNNNNN ................................ GACCGCTTTTAGCGCGCCGGTATGCGACTTGGC 990963 32 100.0 33 NNNNNNNNNN ................................ TCGCATATCAAAGATCCCCAGGTACTCGACAGC 991028 32 100.0 33 NNNNNNNNNN ................................ GATCAACAAAGGCGATCGTCAAGTATGTCTCAA 991093 32 100.0 34 NNNNNNNNNN ................................ TCCGTCGGCCAAGACGAAATGTCGTTTCGGCGCC 991159 32 100.0 33 NNNNNNNNNN ................................ CACATTAGCCGGCGGTATCCAATGGATTACCTT 991224 32 100.0 34 NNNNNNNNNN ................................ AAGATCGATGTTTTCGACGAGATCCACGCCGCGT 991290 32 100.0 32 NNNNNNNNNN ................................ CTGGCCCGCGCCATGGCCGGTGGTGGCGCGAT 991354 32 100.0 34 NNNNNNNNNN ................................ TCGTCACGGGTCATCCGCCGGCTGAAGATCACGC 991420 32 100.0 34 NNNNNNNNNN ................................ AGATTTAGGCCAACCCGCCGGATCTGGTCCGCGA 991486 32 100.0 34 NNNNNNNNNN ................................ TCGTCACGGGTCATCCGCCGGCTGAAGATCACGC 991552 32 100.0 34 NNNNNNNNNN ................................ AGATTTAGGCCAACCCGCCGGATCTGGTCCGCGA 991618 32 100.0 34 NNNNNNNNNN ................................ CGAGGGCTTGTCCTCATTGCACGCCGAAAGGCCC 991684 32 100.0 34 NNNNNNNNNN ................................ GGGTGCTCGCCGTCAAGGACGCTACGCGCCGGCT 991750 32 100.0 34 NNNNNNNNNN ................................ TCGACCCGCAGTATGAAATAAATAAGCGGCGCAG 991816 32 100.0 1 NNNNNNNNNN ................................ NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 38 32 33 GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [5,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [51.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [206,535] Score: 0.18/0.18 # # Final direction: F [0.64,0.18 Confidence: MEDIUM] >NC_017585 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================== ====== 914841 22 100.0 38 NNNNNNNNNN ...................... ACGACAGCGCGGCGACGCCGATCGCCCCGGCCGTCCAC 914901 22 100.0 38 NNNNNNNNNN ..........GCGCTCGCA... ACGACGCCTGCCGGTAGTCGTCCGTAGCCCCGTGTACC 914961 22 100.0 39 NNNNNNNNNN ...................... GACGATAGGCGGAGGACCACCTGCGCTCCGCCGCGGAGA 915022 22 100.0 39 NNNNNNNNNN ...................... GACGATGCCAAAACCCGCAGTCTGCGGACCTGGCGCAAA 915083 22 100.0 1 NNNNNNNNNN ...................... NNNNNNNNNN ========== ====== ====== ====== ========== ====================== 5 22 38 GGAACACCCCCGCGCTCGCGGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [3,1] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [30.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [23,292] Score: 0.18/0.18 # # Final direction: R [0.37,0.86 Confidence: MEDIUM] >NC_017586 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 643707 29 100.0 32 NNNNNNNNNN ............................. TGGGGTATGTGTGTCCCACTCCGCCAGGTCGA 643768 29 100.0 32 NNNNNNNNNN ............................. AACCGAGGGCGGCGCATGCCACCCGTGCGATC 643829 29 100.0 32 NNNNNNNNNN ............................C ATCGCCACCCGGCCCCGCACGCACGAGCGCGT 643890 29 100.0 1 NNNNNNNNNN ...........G.........T...GT.. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 4 29 32 GTCGTCCCCGCCAGCGCGGGGGTAGCCCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-12.20,-13.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [257,1492] Score: 0.18/0.18 # # Final direction: R [0.68,0.92 Confidence: LOW] >NC_017588 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 41793 29 100.0 32 AGGGTTGCGC ............................. CGGCGGAGGGTGGGAACGTCAAGGTAGGGCAC 41854 29 100.0 32 GGTAGGGCAC ............................. TCGGCCCTCCCCTCATCGGTAATGAAGCCATT 41915 29 100.0 32 TGAAGCCATT ............................. CCCCACCCGCATCGGCCAGCCCGCCGCCAGGG 41976 29 100.0 32 GCCGCCAGGG ............................. TCAATGAACGCGTCCGCTTGCTCGGGGTTGAG 42037 29 100.0 32 CGGGGTTGAG ............................. AGGGACTCCATCATGGCCTTGTCAATACGATA 42098 29 100.0 32 CAATACGATA ............................. GCTTTCCACATCCGAGAGGGGATGCAACAGGT 42159 29 100.0 33 TGCAACAGGT ............................. GTTCAGCAGCTCATTCCATCTAGGCGCCAGCTC 42221 29 100.0 32 GCGCCAGCTC ............................. GGCGCCCTCGCCCTTGCCGCCGCCCTGGTGGG 42282 29 96.6 33 CCCTGGTGGG G............................ GATGGCCAGGAGGACCAGCCCACCCTCCGAGGC 42344 29 100.0 CCTCCGAGGC ............................. ACATGACCAG ========== ====== ====== ====== ========== ============================= 10 29 32 CGGTCCATCCCCACGCATGTGGGGACTAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [5,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [36.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [984,192] Score: 0.18/0.18 # # Final direction: F [0.59,0.27 Confidence: MEDIUM] >NC_017588 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 41061 29 96.6 32 CTACCACCCA -............................ AGGGACCGCCCCAAGACCCTGGAGGAGCTCTA 41122 29 100.0 33 AGGAGCTCTA ............................. CCGCCCGGAGCCGTAGCGGAACCACAGGGCGGC 41184 29 100.0 32 ACAGGGCGGC ............................. ACCCACACCATCGTCCTCCCCGCCGCCATGAC 41245 29 100.0 33 CCGCCATGAC ............................. GCTTACCTCCGAGATGCTCTGGGTTGGGGTTGT 41307 29 100.0 32 TTGGGGTTGT ............................. TCAACGACTGGACACCTACACTGAGGTCTCGC 41368 29 100.0 32 GAGGTCTCGC ............................. GTTTCCCTAATGAGGCCGAGTTTGTACGCTCC 41429 29 100.0 TGTACGCTCC ............................. GGGAGGACGC ========== ====== ====== ====== ========== ============================= 7 29 32 CGGTCCATCCCCACGCATGTGGGGACTAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [5,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [33.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [252,1107] Score: 0.18/0.18 # # Final direction: R [0.27,0.59 Confidence: MEDIUM] >NC_017588 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 52134 28 100.0 33 CTGGTCATGT ............................ GACGACAGGCGACTACGTGGTGGAGGACGTGGT 52195 28 100.0 33 AGGACGTGGT ............................ GGCTAGGGGTGTCCTGGCGCTCTGTGAAGCAAC 52256 28 100.0 33 GTGAAGCAAC ............................ GGGGTGTGCGGTGTGCGGCGCTAAGGCTACGAA 52317 28 100.0 34 AGGCTACGAA ............................ GTACCGGGTAGCCCTGGACCTGCACCTCCGCTCC 52379 28 100.0 33 CCTCCGCTCC ............................ GTACCGGCCTCGCCACCGAGGATGGCGCGTATA 52440 28 100.0 33 GGCGCGTATA ............................ AGGGCGGGGGCCCCGGGGGAGGGTAGGGGCAGT 52501 28 100.0 33 TAGGGGCAGT ............................ GCAGCGTAGGCCCGAGCGGACGTGAAGCGCCTC 52562 28 100.0 33 GAAGCGCCTC ............................ GAGGTATTCCGGTACCACCACCTTTTCCACCGG 52623 28 100.0 33 TTTCCACCGG ............................ GCGGACAGGCTCACGGCCGCTTCCCGGGCAATC 52684 28 100.0 33 CCGGGCAATC ............................ GTATCGTATTGACAAGGCCATGATGGAGTCCCT 52745 28 100.0 35 TGGAGTCCCT ............................ GCTCCGCAGGGCCACCGAGGGCACCGCCCCCGCCC 52808 28 100.0 33 GCCCCCGCCC ............................ GGACCCCCAACGGCTCCGGGCTCTGGCCGAGCG 52869 28 100.0 34 TGGCCGAGCG ............................ GGCAACCCCAGGGTTCAGGGGTTCAGTCGCCCAC 52931 28 100.0 33 AGTCGCCCAC ............................ CAGGGTGGCGAGGACGCGGGGGCCGTAGGAGCC 52992 28 100.0 34 CGTAGGAGCC ............................ GCTTCTCCCGCTTGGACTGAACCTGCTTCTCCAC 53054 28 100.0 33 GCTTCTCCAC ............................ ACCTTGCCCCGCTTCTTGCGCATCTCGCACCTC 53115 28 100.0 35 CTCGCACCTC ............................ GGTCGTCCACTACCGCGCTTCCGTGAGCGGCGTGA 53178 28 100.0 34 AGCGGCGTGA ............................ GACTGACCGGGTTGATGCTCGCCTTATTGCCCGC 53240 28 100.0 33 TATTGCCCGC ............................ GCTGGGCAAAACTCTACCCTGCCCCCGGTGCGG 53301 28 100.0 34 CCCGGTGCGG ............................ AGTTCTGCCTTCACGCTCACCGCTTGCCTCCTTC 53363 28 100.0 33 TGCCTCCTTC ............................ GCGTCCCAAGTCAGTCCTCATCATCGTTACCTC 53424 28 100.0 33 TCGTTACCTC ............................ GAACCTTTCCGCCCCGGCAGACGCGAACCTGGT 53485 28 100.0 CGAACCTGGT ............................ GTCGGCCACG ========== ====== ====== ====== ========== ============================ 23 28 33 GTAGTCCCCACGCGTGTGGGGATGGACC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [62,79] Score: 0/0.18 # # Final direction: R [0.27,0.37 Confidence: LOW] >NC_017623 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3740862 29 100.0 32 GAACGCCCCT ............................. GCGAAATAGTGGGGAAAAACCCCTGGTTAACC 3740923 29 96.6 32 CTGGTTAACC .......................A..... TAGGCCTTGATACCATCGCTCGCACCTCGTCA 3740984 29 100.0 32 CACCTCGTCA ............................. GTTTATTACTGCTTAGTTAATTAATGGGTTGC 3741045 29 100.0 32 AATGGGTTGC ............................. TCTTTTGATTTTGCTGCGATGTTATAACCAGA 3741106 29 100.0 32 TATAACCAGA ............................. TATCCACATATACCCGCAATCATATTCAAGAA 3741167 29 100.0 32 TATTCAAGAA ............................. AATCACTGCGGGGGTATTTAGCGGAAACGGCT 3741228 29 100.0 28 GGAAACGGCT ............................. GATCGAGTAACGTGCGCTGGAACGCGTC 3741285 29 48.3 32 GGAACGCGTC ---------------.............. AATTAAAGCCGAGGGTGGCACCGCGCCTTATT 3741346 29 100.0 32 GCGCCTTATT ............................. GTTACGTTCGGTAAATGGAAAGCGGCGAATAT 3741407 29 100.0 32 CGGCGAATAT ............................. CCAGAAAGTGCCGGTAGTGCCTGATGAACGAC 3741468 29 100.0 32 GATGAACGAC ............................. CGCGCCCACTTCCGTAAAATACAGATAATCCA 3741529 29 100.0 32 AGATAATCCA ............................. ACCGTTCCGGTATGATCGAAGATACGGCAAAC 3741590 29 96.6 32 TACGGCAAAC ......................A...... GGCAGCGGGCGAGGCAAACACATTCGGGGCGT 3741651 29 100.0 32 TTCGGGGCGT ............................. GGTAATTTCTCATCTAACAGCCTGTACGCCTC 3741712 29 96.6 32 TGTACGCCTC A............................ GAATCTAATGCAACAGATGAATAAACACGTAA 3741773 29 100.0 32 AAACACGTAA ............................. TCTTTATCGTCAATGCGAAATTTTCCGCGACG 3741834 29 100.0 32 TTCCGCGACG ............................. TCCCATTCACCAACAACAATATCGCCCTGCAA 3741895 29 100.0 32 CGCCCTGCAA ............................. CGTTGCGTCAGGTTGATCCAGTGCGTCAGCGG 3741956 29 100.0 32 GCGTCAGCGG ............................. TGATGAAATCGTCAATAAAATTATTGGCGCGC 3742017 29 100.0 32 ATTGGCGCGC ............................. ACCACCGGAGCCATCGCCCAACACAGAGCCGC 3742078 29 100.0 32 ACAGAGCCGC ............................. GGCAAACCCGCAAGGCCCGTATATGGATTTAA 3742139 29 100.0 32 ATGGATTTAA ............................. AACCAATCCAGGCGATAAGAGGCGATTAAAGG 3742200 29 100.0 38 CGATTAAAGG ............................. TCTCGGTCTCGGTCTCGGTCTCGGTCTCGGTAGTGACG 3742267 29 100.0 32 GGTAGTGACG ............................. ATTTTATTTGACAAATTGGCGGCATCTCACTG 3742328 29 100.0 32 CATCTCACTG ............................. CACCACACATAATGATTACTCCACTACCCAGC 3742389 29 100.0 32 ACTACCCAGC ............................. ACTGCTTATCATTGATTTTATTGATTTTTCCC 3742450 29 100.0 GATTTTTCCC ............................. ACTAAAACT ========== ====== ====== ====== ========== ============================= 27 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [40.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [77,83] Score: 0/0.18 # # Final direction: R [0,1.92 Confidence: HIGH] >NC_017588 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 77759 36 100.0 39 TGTCTACCCT .................................... GTGGTGGCGGGCGTGCGCCACCCGGCCTAGGGTGATGGC 77834 36 100.0 35 GGGTGATGGC .................................... GCTATGTCGGGGCGGGGTACACCGCCCTAGTCCAG 77905 36 100.0 40 CCTAGTCCAG .................................... CGTGGGGAGATTAGTTCGTATGGCCCCCTTTACCTTCTTA 77981 36 100.0 34 TACCTTCTTA .................................... TCAAAGGGGCCCTGGGGAGCCTCCTGGACCAGCT 78051 36 100.0 36 TGGACCAGCT .................................... CGCAAAGAGGCCGCCGAGCGCCGGGTGGAAAAAAGG 78123 36 100.0 35 GGAAAAAAGG .................................... AGGCGCTCCCGCTCCCGCTCCAACTCCCGCAAACG 78194 36 100.0 CCCGCAAACG .................................... GGCCCCCTCC ========== ====== ====== ====== ========== ==================================== 7 36 36 GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.80,-4.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [45.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [97,241] Score: 0.18/0.18 # # Final direction: R [0.27,5.05 Confidence: HIGH] >NC_017588 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 89345 36 100.0 35 GGAGGGGGCC .................................... TTGCCCTCCCGGGCGTCCTCCCCCAGGTCCCGCCA 89416 36 100.0 36 GGTCCCGCCA .................................... AGCCATAGCTCGTGGCTCACCGCGGCGATAGCCTCA 89488 36 100.0 37 GATAGCCTCA .................................... GGGGGAAGTCGGACACGCAATGCCCCGCCGAGATGAA 89561 36 100.0 35 CCGAGATGAA .................................... TTGGGGGCCTCCTCAGCCTCCAGGAGGCTCAATAG 89632 36 100.0 35 GGCTCAATAG .................................... AGGGTATAGCCTACGCTTATCATGTCAACCTACAC 89703 36 100.0 36 CAACCTACAC .................................... TTTGTATAGACCCCAGGAACGACCTGGGCGGATATC 89775 36 100.0 38 GGCGGATATC .................................... CCCCATGCCTAAAATCCTCTCCCTAGTTCTGGGCCAAG 89849 36 100.0 37 CTGGGCCAAG .................................... CCGGGGCGGGCGGGCATGGGCGGCCACCCTCAAGGGC 89922 36 100.0 39 CCTCAAGGGC .................................... TGTGGGGTGGGGGATGGGACCCCGGCCCGTGGGCCTTTC 89997 36 100.0 38 TGGGCCTTTC .................................... TTAGATGTTGTCTACGCCCCCGTCATGGATGAGCCTGG 90071 36 100.0 36 ATGAGCCTGG .................................... GCGAGGGGCCTGGGCCAAGGACGGCGAAGTTCGTGC 90143 36 100.0 36 AAGTTCGTGC .................................... AAATGCTTGCGGGCCCTGACAGGTTTGCGCTCGGGG 90215 36 100.0 37 GCGCTCGGGG .................................... TGGGGTTCTCCTTCCGTGCCCCTCCCTTCCGATTCTT 90288 36 100.0 37 TCCGATTCTT .................................... GATAGCGAGGTGTTCAGGATGGCTTTCTACCGCCAGC 90361 36 100.0 36 TACCGCCAGC .................................... CCGTCCGCGTCTACCGCCACGGAGATCTCCGGGACG 90433 36 100.0 36 CTCCGGGACG .................................... CTCCTGGACGGCCCGCATGGGGTGCAGGCCCTCCGC 90505 36 100.0 36 GGCCCTCCGC .................................... GTCCCGGCGAGCGCCCAGGGGGAGAGGCGGGCCACG 90577 36 100.0 35 GCGGGCCACG .................................... CATCACCCGAAGCTCCCCGATGGCCCGTTCCAGGA 90648 36 100.0 36 CGTTCCAGGA .................................... CTCTCCCGTGGAGCTGGAGGCCATAGCCTACGCTCT 90720 36 100.0 36 CCTACGCTCT .................................... GTGGAGCGCGGCGCCCACGGCCTCGGGCGGGGGAGG 90792 36 100.0 35 GCGGGGGAGG .................................... ATAATCCCGCCCCCCCTGCACTTAGCGCATGCCTC 90863 36 100.0 37 CGCATGCCTC .................................... GACTCGAGCCCCCTCGCCGCCCCCTACTACGCGGAGG 90936 36 100.0 37 TACGCGGAGG .................................... CCTGGTCCAGCAGGGGCACGAGGCCGAGCTCCTGGGG 91009 36 100.0 36 GCTCCTGGGG .................................... TTCAGGGGGAGGGCGGCGAGGCGCAGGTCGAGGAGC 91081 36 100.0 37 GTCGAGGAGC .................................... TCCCGCGCCTCCAAGGCGGCCTTCGCGAGGGGAAGCA 91154 36 100.0 AGGGGAAGCA .................................... CCGAGATAAA ========== ====== ====== ====== ========== ==================================== 26 36 36 GTTGCAAACCTCGTTAGCCTCGTAGAGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.90,-3.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [26.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [241,1378] Score: 0.18/0.18 # # Final direction: F [4.87,0.45 Confidence: HIGH] >NC_017623 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3758782 29 100.0 32 CCGATGAACG ............................. TCTTTATCAGCTAACCATTTCCAGAACTCGTC 3758843 29 96.6 32 AGAACTCGTC ...........T................. TATAATATGAATTAATTTTTGCGCATAACCTG 3758904 29 100.0 32 GCATAACCTG ............................. TGCCCGTTCTGCCTCTTCGCACTCTCGATCAA 3758965 29 100.0 32 TCTCGATCAA ............................. GTCGCGTTCGTTGCCGGTATAGACCAGCGTCA 3759026 29 100.0 32 ACCAGCGTCA ............................. ATCGAATCGAAACCCCAGCCACAGAAATAATT 3759087 29 100.0 32 AGAAATAATT ............................. GCTCATGTCAAACGCCATCAGCGTTCCGGCAT 3759148 29 96.6 32 GTTCCGGCAT ...............A............. AATCGCCAGCCTCGGAAATATTCCATCCTCCG 3759209 29 100.0 32 CCATCCTCCG ............................. AGGAACTAAACAGCCTGACCGTTGAGGATCTG 3759270 29 100.0 32 TGAGGATCTG ............................. ACCGGACAAATCTTTTTTTTCCTGTTCCTGTT 3759331 29 100.0 32 TGTTCCTGTT ............................. GGGCGGTCCCCGGCCTCAATACCGCGCTGACG 3759392 29 100.0 32 CGCGCTGACG ............................. TTGAGGTGCCGCTTGCCGTTCTTCTGTTTTTT 3759453 29 100.0 32 TCTGTTTTTT ............................. GGGCACTATGAACGGATCGGCGCTGATGCCGG 3759514 29 100.0 32 CTGATGCCGG ............................. GGTAAAGCCACACCATTTTTTATTGACCTCGC 3759575 29 100.0 32 TTGACCTCGC ............................. CTAGGAGGCGTAATGAATACTACGTATCAAAA 3759636 29 100.0 32 CGTATCAAAA ............................. GTGGTGGCCTCAAATAAATTCGAGCGCTGGAG 3759697 29 100.0 32 AGCGCTGGAG ............................. TCGACGTGGACGAGGAGTTACTCAACCGCTGC 3759758 29 100.0 32 CAACCGCTGC ............................. TAATGGCCACAGTAAGTCAAACGGTTCTGGAA 3759819 29 100.0 GGTTCTGGAA ............................. ACTAAACGGA ========== ====== ====== ====== ========== ============================= 18 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [160,298] Score: 0/0.18 # # Final direction: R [0,1.92 Confidence: HIGH] >NC_017625 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1005300 29 100.0 32 NNNNNNNNNN ............................. CTTTCGCAGACGCGCGGCGATACGCTCACGCA 1005361 29 100.0 32 NNNNNNNNNN ............................. CAGCCGAAGCCAAAGGTGATGCCGAACACGCT 1005422 29 100.0 32 NNNNNNNNNN ............................. GGCTCCCTGTCGGTTGTAATTGATAATGTTGA 1005483 29 100.0 33 NNNNNNNNNN ............................. TTTGGATCGGGTCTGGAATTTCTGAGCGGTCGC 1005545 29 100.0 33 NNNNNNNNNN ............................. CGAATCGCGCATACCCTGCGCGTCGCCGCCTGC 1005607 29 100.0 32 NNNNNNNNNN ............................. TCAGCTTTATAAATCCGGAGATACGGAAACTA 1005668 29 100.0 32 NNNNNNNNNN ............................. GACTCACCCCGAAAGAGATTGCCAGCCAGCTT 1005729 29 100.0 32 NNNNNNNNNN ............................. CTGCTGGAGCTGGCTGCAAGGCAAGCCGCCCA 1005790 29 100.0 32 NNNNNNNNNN ............................. GGGGGCGCATGACCGTAAACATTATCCCCCGG 1005851 29 100.0 32 NNNNNNNNNN ............................. GGAGTTCAGACATAGGTGGAATGATGGACTAC 1005912 29 100.0 32 NNNNNNNNNN ............TT............... CCCGGTAGCCAGGTTTGCAACGCCTGAACCGA 1005973 29 100.0 32 NNNNNNNNNN .................A........... GCAACGACGGTGAGATTTCACGCCTGACGCTG 1006034 29 100.0 1 NNNNNNNNNN .T.........AT................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 13 29 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,3] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-13.40,-12.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [107,84] Score: 0/0.18 # # Final direction: F [1.92,0 Confidence: HIGH] >NC_017625 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 979356 28 100.0 33 TATGTTTAGA ............................ GGCAAAAACCGGGCAATCGCAAAAAGGCGTAAT 979417 28 100.0 33 AAGGCGTAAT ............................ TGTGTTTGCGGCATTAACGCTCACCAGCATTTC 979478 28 100.0 33 CCAGCATTTC ............................ GACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 979539 28 100.0 33 TGCAGAGCCA ............................ GAGCAGATACACGGCTTTGTATTCCGTGCGCCC 979600 28 100.0 33 CCGTGCGCCC ............................ GAATAGCAATAGTCCATAGATTTGCGAAAACAG 979661 28 100.0 33 GCGAAAACAG ............................ GGAGCCTGACGAGACTACTGAGGCCGTTCTGTC 979722 28 96.4 CCGTTCTGTC .A.......................... ACCATATAAC ========== ====== ====== ====== ========== ============================ 7 28 33 GTGTTCCCCGCGCCAGCGGGGATAAACC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-13.40,-12.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [341,641] Score: 0/0.18 # # Final direction: F [1.65,0 Confidence: HIGH] >NC_017588 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 95113 36 100.0 35 CGGGGGATGC .................................... CCGGACCCGGTCCAGTATCTGGCCCAACCTCTCCA 95184 36 100.0 36 AACCTCTCCA .................................... CGGGTCCTGGACTGGGGGCGGCGGGGCGGGGACTGG 95256 36 100.0 37 CGGGGACTGG .................................... TGGCAGAGCATGGAAGTACGTGGCACTGGGGGGCCAA 95329 36 100.0 35 GGGGGGCCAA .................................... CAGTAGGCGAGGACCTTCTGCCTGGCCTCCTCCTC 95400 36 100.0 38 CCTCCTCCTC .................................... ACCTATGAGCGCCCAGAGCCAGAGTGAGCACCGCATCT 95474 36 100.0 34 CACCGCATCT .................................... TCGAATCATGGCCGCCTCGTCCACGATGGCCAAG 95544 36 100.0 37 GATGGCCAAG .................................... CAGCATGAGCGCCACCCCCAACGCCAGGAGGAGGGCT 95617 36 100.0 37 GAGGAGGGCT .................................... CCCGGGCGGGGCGGCCGGCCGCCCCGCCCTTTTATTG 95690 36 100.0 36 CCTTTTATTG .................................... CTTGCCCCGCCTGTGCCCCATCCCGCCTCCACCACG 95762 36 100.0 36 CTCCACCACG .................................... CTCGGGCGGGGCCTCGCCCCGGCGCTGGCGGAACTC 95834 36 100.0 37 GGCGGAACTC .................................... CTTCCCCGTGGCCGATGGGCTGCTGGACGCAGGGTTT 95907 36 100.0 35 CGCAGGGTTT .................................... ACCTCGTCATAAGCGGCGTGGTAGACTTTGACCAA 95978 36 100.0 37 CTTTGACCAA .................................... TCCCTCATCGCCCAGGATGTGCGGGCCGCCGAGTGGA 96051 36 100.0 36 GCCGAGTGGA .................................... GCCGGGGGCTAGGCCGCAGAACCACTACCCCCACGC 96123 36 100.0 37 ACCCCCACGC .................................... TCCAGGACGGCGCTCCACCGCCGGACCACCCTAGCCC 96196 36 100.0 37 ACCCTAGCCC .................................... AGCTCTATGAGGAGGGCCCCGTGCCGCTCCGTGGTCC 96269 36 100.0 35 TCCGTGGTCC .................................... GCGCGTGGGCGGGTGGCCGCGCGGCGTGCCGGGTG 96340 36 100.0 35 GTGCCGGGTG .................................... TTTCTGGCCGGGGCGCTGGTGCGGCCGCCGGAGCT 96411 36 100.0 CGCCGGAGCT .................................... CTGGGAGCCCCACCTGGAGGGCACTACCCTCCACCTC ========== ====== ====== ====== ========== ==================================== 19 36 36 GTTGCAAACCTCGTTAGCCTCGTAGAGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.90,-3.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [109,443] Score: 0.18/0.18 # # Final direction: F [5.14,0.18 Confidence: HIGH] >NC_017590 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 88689 37 97.3 36 CGCCTGCCTT ...........T......................... CTTGGCAGGAATTTCTCCCCTAGACAGGAGCGCCCG 88762 37 100.0 35 GGAGCGCCCG ..................................... GGGGCCCCATGTGCGCCTAGAAACCACGCTCGCCG 88834 37 100.0 33 ACGCTCGCCG ..................................... GGGAGCGGGGGTCAAGGTCCACAGGAACCCGGG 88904 37 100.0 34 GGAACCCGGG ..................................... AGGCCATTCCTTACTTTGAGGCTCATCCAACACA 88975 37 100.0 36 ATCCAACACA ..................................... CAGTGGGGAGGGCGGCGTCGTTGTCGGGAATGATCT 89048 37 100.0 GGAATGATCT ..................................... TCCCCCCCTGA ========== ====== ====== ====== ========== ===================================== 6 37 34 CCTGCAACGTAGCCAAGCTGTGAAGCTTGGATGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [10,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-11.20,-9.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [41.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [38,130] Score: 0.18/0.18 # # Final direction: F [1.01,0.59 Confidence: LOW] >NC_017628 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 943332 28 100.0 33 TATTATTCCA ............................ TGGATTCCAAACCGCCCACCAACAAAAACAGGT 943393 28 100.0 32 AAAAACAGGT ............................ GATACGATCGAATTTAGTCACTGAATACCCCC 943453 28 100.0 32 GAATACCCCC ............................ GGGTTGCGCAATGGGCTGGCCGACGAACGCGG 943513 28 100.0 32 ACGAACGCGG ............................ TGTGGCGCTGATGCGTCTGGGCGTCTTTGTAC 943573 28 100.0 32 GTCTTTGTAC ............................ GCGCGCAGTGCCTGATAATCAATTTTGCTCAT 943633 28 100.0 TTTTGCTCAT ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG ========== ====== ====== ====== ========== ============================ 6 28 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [542,174] Score: 0.18/0.18 # # Final direction: F [1.69,0 Confidence: HIGH] >NC_017628 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 933764 28 100.0 32 NNNNNNNNNN ............................ TGACGCCATATGCAGATCATTGAGGCGAAACC 933824 28 100.0 32 NNNNNNNNNN ............................ ACGTTCGCACCGGTCAGGGTACTGCGCAGCGT 933884 28 100.0 32 NNNNNNNNNN ............................ GAAACCAGAGCGCCCGCATAAAACAGGCACAA 933944 28 100.0 32 NNNNNNNNNN ............................ GCCAGCATAAAACCGCCTTTGATATTTTATTG 934004 28 100.0 32 NNNNNNNNNN ............................ TCAGCCGGAGGCTCTCAATTTCAGCCGCGCGG 934064 28 100.0 32 NNNNNNNNNN ............................ AGCACGGCTGCGGGGAATGGCTCAATCTCTGC 934124 28 100.0 32 NNNNNNNNNN ............................ TGATGGCGCAGCAGTCCTCCCTCCTGCCGCCA 934184 28 100.0 32 NNNNNNNNNN ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 934244 28 100.0 1 NNNNNNNNNN ....................TA.TC.C. NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 9 28 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [2528,174] Score: 0.18/0.18 # # Final direction: F [1.83,0 Confidence: HIGH] >NC_017632 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2717995 28 100.0 32 NNNNNNNNNN .G.GA.TA.................... AAGGAGAGACGGTCGCACTCTTCAACGTTCAG 2718055 28 100.0 32 NNNNNNNNNN ............................ TGGCGGCAGGAGGGAGGACTGCTGCGCCATCA 2718115 28 100.0 32 NNNNNNNNNN ............................ GCAGAGATTGAGCCATTCCCCGCAGCCGTGCT 2718175 28 100.0 32 NNNNNNNNNN ............................ CCGCGCGGCTGAAATTGAGAGCCTCCGGCTGA 2718235 28 100.0 32 NNNNNNNNNN ............................ CAATAAAATATCAAAGGCGGTTTTATGCTGGC 2718295 28 100.0 32 NNNNNNNNNN ............................ TTGTGCCTGTTTTATGCGGGCGCTCTGGTTTC 2718355 28 100.0 32 NNNNNNNNNN ............................ ACGCTGCGCAGTACCCTGACCGGTGCGAACGT 2718415 28 100.0 32 NNNNNNNNNN ............................ GGTTTCGCCTCAATGATCTGCATATGGCGTCA 2718475 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 9 28 32 TTTCTAAGCTGCCTGTACGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,8] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [174,214] Score: 0/0.18 # # Final direction: R [0,1.65 Confidence: HIGH] >NC_017632 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2708607 28 100.0 32 CAAAATATTC ............................ ATGAGCAAAATTGATTATCAGGCACTGCGCGC 2708667 28 100.0 32 CACTGCGCGC ............................ GTACAAAGACGCCCAGACGCATCAGCGCCACA 2708727 28 100.0 32 CAGCGCCACA ............................ CCGCGTTCGTCGGCCAGCCCATTGCGCAACCC 2708787 28 100.0 32 TGCGCAACCC ............................ GGGGGTATTCAGTGACTAAATTCGATCGTATC 2708847 28 100.0 33 CGATCGTATC ............................ ACCTGTTTTTGTTGGTGGGCGGTTTGGAATCCA 2708908 28 100.0 TTGGAATCCA ............................ TGGAATAATAG ========== ====== ====== ====== ========== ============================ 6 28 32 TTTCTAAGCTGCCTGTACGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,8] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [58.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [174,541] Score: 0.18/0.18 # # Final direction: R [0,1.69 Confidence: HIGH] >NC_017591 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 1653331 19 100.0 23 NNNNNNNNNN GA.T.A..C.......TG. TTGCTGATGCTGAGGCACTGGTT 1653373 19 100.0 29 NNNNNNNNNN GAC..............G. TAGTACTTGCTGAAGCCGAGGCACTGGTT 1653421 19 100.0 29 NNNNNNNNNN GA......G........G. TAGTACTTGCTGAAGCTGAGGCACTTGTC 1653469 19 100.0 29 NNNNNNNNNN GA......G..C..A.... TGGTACTTGCTGAAGCCGAAGCACTCGTT 1653517 19 100.0 53 NNNNNNNNNN GA......G.....A.... TGGTTGACGCTGAAGCTGAGGCACTCGTTGAGGCTGAAGCCGAAGCACTCGTT 1653589 19 100.0 59 NNNNNNNNNN GA...G........C.... TGGTACTTGCTGAAGCTGAGGCGCTTGTGCTTGCTGAGGCCGAGGCACTTGTTGAGGCC 1653667 19 100.0 53 NNNNNNNNNN GA.T.A..........T.. TCGTTGATGCGGATTCAGATGCTGAGGTGCTTGCTGAGGCCGAGGCGCTGGTT 1653739 19 100.0 59 NNNNNNNNNN GA...A............. TGGTTGACGCTGAAGCTGAGGCACTGGTTGAGGCCGATTCAGAAGCTGAGGTACTGGTG 1653817 19 100.0 53 NNNNNNNNNN ................... TCGTTGATGCCGATTCAGACGCTGAGGTGCTTGCTGAAGCTGATGCACTTGTT 1653889 19 100.0 29 NNNNNNNNNN GA......G........G. TGGTTGATGCCGATTCAGACGCTGAGATA 1653937 19 100.0 59 NNNNNNNNNN ........G........G. TTGTACTTGCTGAAGTCGACGCACTGGTTGAGGCCGATTCAGATGCTGACGTACTTGCA 1654015 19 100.0 59 NNNNNNNNNN ....T...C..C..T.TG. TTGCACTTGTCGATGCTGACGTGCTTGCCGATGTACTTGTGCTTGTTGATGCTGACGTG 1654093 19 100.0 65 NNNNNNNNNN ...........C..A.... TGGTGCTTGCTGAAGCCGATGCACTTGTACTTGCTGAGGTTGATGCCGATTCAGACGCACTCGTT 1654177 19 100.0 77 NNNNNNNNNN GA...G........C.... TGGTTGACGCTGAGGCTGACGCACTCGTTGATGCGGAAGCCGAGGCACTGGTGCTTGCTGATTCAGATGCACTTGTC 1654273 19 100.0 101 NNNNNNNNNN GA.........C....... TTGTCGACGCTGAGGCTGAGGCACTGGTTGATGCTGAAGCTGAAGCGCTTGTCGATGCTGAGGCTGAAGCACTGGTTGAGGCCGATTCAGACGCTGAGGTA 1654393 19 100.0 77 NNNNNNNNNN ..............T.... TGGTACTTGCTGAGGCTGAGGCACTGGTGCTTGCTGAAGCTGATGCACTGGTTGATGCTGAGGCTGAAGCACTTGTA 1654489 19 100.0 101 NNNNNNNNNN ........G........G. TTGTTGATGCGGATGCTGACGCACTGGTGCTTGCTGAAGCTGATGCACTCGTTGATGCGGATGCTGACGCACTGGTTGATGCAGATTCAGACGCTGAGATA 1654609 19 100.0 77 NNNNNNNNNN ........G.......... TCGTTGACGCTGACGTACTTGCGCTGGTTGATGCGGAAGCTGAGGCGCTTGTGCTTGCTGAAGCCGACGCACTCGTT 1654705 19 100.0 77 NNNNNNNNNN GA............A..G. TTGTCGATGCTGAGGCTGACGCACTTGTCGACGCTGAAGCTGAAGCACTGGTTGACGCTGAAGCTGATGCACTCGTT 1654801 19 100.0 101 NNNNNNNNNN GAC...........A..G. TGGTTGAGGCTGAGGCTGAGGCGCTAGTACTTGCTGACTCTGATGCACTGGTACTTGCTGAGGCTGACGCACTTGTGCTTGCTGAAGCGGACGCACTCGTT 1654921 19 100.0 77 NNNNNNNNNN GA...G........T.... TGGTACTTGCTGACTCTGATGCACTGGTACTTGCTGAGGCTGACGCACTTGTGCTTGCTGAAGCCGATGCACTCGTT 1655017 19 100.0 101 NNNNNNNNNN GA...G........T.... TTGTTGATGCGGAAGCTGATGCACTCGTTGATGCTGAAGCTGAGGCGCTAGTACTTGCTGAGGCTGAGGCACTGGTTGAGGCCGATTCAGACGCTGAGGTA 1655137 19 100.0 101 NNNNNNNNNN ...........C....... TTGTCGACGCTGAGGCTGAAGCACTGGTACTTGCTGAGGCTGACGCACTGGTACTTGCTGAAGCTGAGGCGCTAGTACTTGCTGAAGCCGAGGCGCTGGTG 1655257 19 100.0 77 NNNNNNNNNN ...........C..A.... TGGTTGACGCTGAAGCTGAGGCGCTCGTTGATGCCGATTCAGACGCTGAGGTGCTTGCTGAAGCTGAGGCGCTAGTA 1655353 19 100.0 77 NNNNNNNNNN ..............T.... TGGTTGATGCTGAAGCTGAAGCACTTGTTGACGCTGAGGCTGAAGCACTTGTTGATGCGGATTCAGAAGCTGATGTG 1655449 19 100.0 77 NNNNNNNNNN ........G.....C.... TCGTTGATGCTGACTCAGACGCACTCGTTGACGCTGAAGCCGAAGCACTTGTTGACGCTGATGCTGAGGCGCTAGTA 1655545 19 100.0 53 NNNNNNNNNN ........G.....C.... TGGTACTTGCTGAAGCTGAGGCACTTGTCGACGCTGAAGCCGAAGCACTGGTG 1655617 19 100.0 77 NNNNNNNNNN ..............C.... TTGTTGAGGCCGAAGCTGATGCACTGGTTGATGCTGAAGCTGAAGCACTGGTGCTTGCTGAAGCTGATGCACTCGTT 1655713 19 100.0 83 NNNNNNNNNN GA...G..T.....C.... TGGTTGATGCAGATTCAGACGCTGAGATACTTGCTGAGGCTGAAGCTGAGGCACTTGTTGATGCTGAGGCTGACGCACTTGTA 1655815 19 100.0 53 NNNNNNNNNN ...........C..C.... TGGTGCTTGCTGAGGCTGATGCACTGGTTGATGCTGATTCAGAAGCTGATGTG 1655887 19 100.0 77 NNNNNNNNNN ...........C..C.... TCGTTGATGCTGAAGCTGAAGCACTCGTTGATGCTGAAGCCGACGCACTCGTTGATGCTGAGGCTGACGCACTGGTA 1655983 19 100.0 77 NNNNNNNNNN ................... TTGTCGACGCTGAAGCCGAGGCACTGGTGCTTGCTGAAGCCGAAGCACTTGTCGACGCTGAAGCTGAAGCGCTTGTC 1656079 19 100.0 77 NNNNNNNNNN GA......G.....C.... TTGTCGACGCTGAAGCTGAAGCGCTTGTCGATGCTGAGGCTGAGGCAGACGTTGATGCGGATTCAGACGCACTTGTG 1656175 19 100.0 47 NNNNNNNNNN ........G..C..A.... TGGTACTTGCTGAAGCCGACGCACTCGTTGAGGCTGACTCAGACGCA 1656241 19 100.0 53 NNNNNNNNNN ..C.T...G.....A..TG ACGCACTCGTTGATGCTGAAGCCGAGGCACTGGTTGACGCTGAAGCTGAGGCG 1656313 19 100.0 35 NNNNNNNNNN ....T...T........TG AGGCACTAGTACTTGCTGAAGCCGAAGCACTTGTT 1656367 19 100.0 47 NNNNNNNNNN GAC.....T........G. TAGTACTTGCTGAGGCTGATGCGCTTGTGCTTGATGAAGCTGAGGCA 1656433 19 100.0 29 NNNNNNNNNN ....T...T........TG ACGCACTCGTTGATGCAGATTCAGACGCA 1656481 19 100.0 29 NNNNNNNNNN ....TGCTT........TG ACGCACTGGTTGATGCGGAAGCTGAGGCG 1656529 19 100.0 29 NNNNNNNNNN ....TGCTT.....A..CG ACGCACTCGTTGATGCTGAAGCTGAAGCG 1656577 19 100.0 29 NNNNNNNNNN ....TC..T........TG ACGCACTTGTCGACGCTGAAGCTGAAGCA 1656625 19 100.0 29 NNNNNNNNNN ..G.T...C.....A..TG ATGCACTCGTTGACGCTGAAGCTGAAGCG 1656673 19 100.0 29 NNNNNNNNNN ..G.T...G........TG AGGCGCTAGTACTTGCTGACTCTGATGCA 1656721 19 100.0 53 NNNNNNNNNN ..G.TACTT........TG ACGCACTTGTGCTTGCTGAAGCGGACGCACTCGTTGATGCGGAAGCTGATGCA 1656793 19 100.0 29 NNNNNNNNNN ..G.TACTT.....CT.TG ATGCACTGGTACTTGCTGAGGCTGACGCA 1656841 19 100.0 29 NNNNNNNNNN ....TGCTT.....A..CG ATGCACTCGTTGATGCGGAAGCTGATGCA 1656889 19 100.0 29 NNNNNNNNNN ....T...T..G..A..TG ATGCACTCGTTGATGCTGAAGCTGAGGCG 1656937 19 100.0 53 NNNNNNNNNN ..A.TACTT........TG AGGCACTGGTTGAGGCCGATTCAGATGCACTGGTTGAGGCCGATTCAGACGCT 1657009 19 100.0 53 NNNNNNNNNN GAG.TACTT.....A..TG ACGCACTGGTTGACGCTGAAGCTGATGCACTGGTTGACGCTGAGGCCGAAGCA 1657081 19 100.0 29 NNNNNNNNNN ..G.TACTT..G..A..CG ACGCACTGGTGCTTGCTGAAGCCGAGGCG 1657129 19 100.0 1 NNNNNNNNNN ..A.TGCTT.....A..CG NNNNNNNNNN ========== ====== ====== ====== ========== =================== 51 19 56 CTTGCTGAAGCTGAGGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [4,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [60-123] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [2394,10101] Score: 0.18/0.18 # # Final direction: F [0.41,0.18 Confidence: MEDIUM] >NC_017633 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3199882 29 100.0 32 NNNNNNNNNN T..........................T. GACAGAACGGCCTCAGTAGTCTCGTCAGGCTC 3199943 29 100.0 32 NNNNNNNNNN ............................. CCGCCGTTGGCACCGTCAAACTCCGGTACTGT 3200004 29 100.0 32 NNNNNNNNNN ............................. AAAATTTGTTGCAAAACTCGCTGTAAAAATAG 3200065 29 100.0 32 NNNNNNNNNN ............................. CACCACCGGTACGCCTGACGCCAGCGCAGCGG 3200126 29 100.0 32 NNNNNNNNNN ............................. TCGCGCCAGCACGTCGTCCGGAATCATGATTC 3200187 29 100.0 32 NNNNNNNNNN ............................. TACATGATCTCCAATAGTTGGGTATACAGTGA 3200248 29 100.0 32 NNNNNNNNNN ............................. ATCACCAATGAGGGTGCATTCCGTTGGCACGC 3200309 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 8 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [640,341] Score: 0/0.18 # # Final direction: R [0,1.65 Confidence: HIGH] >NC_017634 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 873114 28 100.0 32 TAGTATTTGA ............................ AGCAGCTTTCCAGCGAGCGCGGTTAACTCACT 873174 28 100.0 32 TTAACTCACT ............................ AAAACGGCGGGTTTTTTACGCGTGTGGCTGCA 873234 28 100.0 32 TGTGGCTGCA ............................ GTTAACCGTTTCACACTTAACACTATGAACCG 873294 28 100.0 32 CTATGAACCG ............................ CTACAGCAACTGATGCAACGGTAAGCGCGATC 873354 28 100.0 32 AAGCGCGATC ............................ AGCAGCGGTGGCGAACCGCGCGTTGTTGATTT 873414 28 100.0 32 TTGTTGATTT ............................ AGAACTCGAAATTTATCGCGGGACTTTTCAGC 873474 28 100.0 32 ACTTTTCAGC ............................ AGGCTGCTGGCGCTCTCGTTGTTAACGGCAGC 873534 28 100.0 32 TAACGGCAGC ............................ GTTCCACGCGGATATCTGTAATTTCCAGCAAA 873594 28 100.0 TTCCAGCAAA ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT ========== ====== ====== ====== ========== ============================ 9 28 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [214,234] Score: 0/0.18 # # Final direction: F [1.51,0 Confidence: HIGH] >NC_017634 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 882741 28 100.0 32 NNNNNNNNNN ............................ TGAAAGTTGACGCCAGCGGCGACCCGCGTCAC 882801 28 100.0 32 NNNNNNNNNN ............................ AAGGCAAGTGATGGCGAAATTACCCGCGCAAT 882861 28 100.0 32 NNNNNNNNNN ............................ AAATTGGGGACACTTTCTTCTACCTCTTTTGT 882921 28 100.0 32 NNNNNNNNNN ............................ TCAATGCTGCTAAACGCGCACATGAAGAGTCA 882981 28 100.0 32 NNNNNNNNNN ............................ GCGCACGGCGTGGCGACAGAGAGCACGCCCGC 883041 28 100.0 32 NNNNNNNNNN ............................ ACAGAACAGGCGAAAGAAAGGGTACGCAGTAA 883101 28 100.0 33 NNNNNNNNNN ............................ TGGATTCCAAACCGCCCACCAACAAAAACAGGT 883162 28 100.0 32 NNNNNNNNNN ............................ GATACGATCGAATTTAGTCACTGAATACCCCC 883222 28 100.0 32 NNNNNNNNNN ............................ AATTCGTGCTGGCGCGGGTCGTGGCATCACGT 883282 28 100.0 32 NNNNNNNNNN ............................ TGACGTCGCGTGAATATGACGCCGTTGTTTTT 883342 28 100.0 32 NNNNNNNNNN ............................ TCATTCTGTACAGAAAGATCAACCATAATATT 883402 28 100.0 32 NNNNNNNNNN ............................ CGGGGAATGACACGCCGTTAATAGTGGAACTT 883462 28 100.0 32 NNNNNNNNNN ............................ GCTTGGGGAGTATTGGGAATCGCTCGGCGGGA 883522 28 100.0 32 NNNNNNNNNN ............................ ATGAAAAGCGCCGCCTTTATGCGCCCGATTTT 883582 28 100.0 32 NNNNNNNNNN ............................ AGTTCGCGGCAGACATACACGCCGGGAGTTTT 883642 28 100.0 33 NNNNNNNNNN ............................ GTTCGACGATTGAGTCCGCCGCTGTTGTTTGAT 883703 28 100.0 32 NNNNNNNNNN ............................ CGGCGGACCACTCATCATCGTATAAATCTTTC 883763 28 100.0 32 NNNNNNNNNN ............................ GCAAACGGAATTAGCAGCAGCATGATCAAAGA 883823 28 100.0 32 NNNNNNNNNN ............................ GACGAATGCCGCACACCAGGGCGTCTCGTCGT 883883 28 100.0 32 NNNNNNNNNN ............................ CTGGAGGCGCTCACACTCACGCGGAGTGAGAC 883943 28 100.0 32 NNNNNNNNNN ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 884003 28 100.0 1 NNNNNNNNNN ....................TC.TC... NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 22 28 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [541,114] Score: 0.18/0.18 # # Final direction: F [2.1,0 Confidence: HIGH] >NC_017635 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3030421 29 100.0 32 CCAGTGCGCC ............................. AAAACCAAACTTCTCCATAAATTCCATAGCCG 3030482 29 100.0 32 TCCATAGCCG ............................. ACGCGCGTACCGGATCGCGGACAACAAATTGC 3030543 29 100.0 32 AACAAATTGC ............................. CTGAAACCAGTTGGCTCGTTGTTCTTCTTTGG 3030604 29 100.0 32 TCTTCTTTGG ............................. GCTGGTTTTGAATCGTCCCGCGCTCGAGACGC 3030665 29 100.0 32 CTCGAGACGC ............................. GGCAACATAACGAACAAAATCAACGTCAACCT 3030726 29 100.0 32 ACGTCAACCT ............................. TTGCTGAAAAAGAAGGCTCCGGCGTTATCAGT 3030787 29 100.0 32 CGTTATCAGT ............................. TAGTTAACTTTTAGACAGAATATCCGTGTACC 3030848 29 100.0 32 TCCGTGTACC ............................. GGTTTTACAAGCTTAAATGATTTTAAATTTTG 3030909 29 100.0 32 TTAAATTTTG ............................. TCTTTGGTATGAGTGACAAAGAGTTTGACGCC 3030970 29 100.0 32 GTTTGACGCC ............................. ATTGTCCAGGGTATGTCCGGTCAGGGGAATAG 3031031 29 100.0 32 AGGGGAATAG ............................. AATTACCGGGTGTCTCGTGCTCATATGCAGTC 3031092 29 100.0 32 ATATGCAGTC ............................. CCGTGTGACGCTCAGCGGCAGAGAGTAAAAAC 3031153 29 100.0 32 GAGTAAAAAC ............................. TAAAGTAGAATAAAAATATTCGCATAACAGAC 3031214 29 100.0 32 CATAACAGAC ............................. CGCGCCGGTATTTGTCCAGTCGAGGGTTTTGC 3031275 29 100.0 AGGGTTTTGC ............................. ACTAAGCATA ========== ====== ====== ====== ========== ============================= 15 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [83,98] Score: 0/0.18 # # Final direction: R [0,1.51 Confidence: HIGH] >NC_017594 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================== ====== 1132187 26 100.0 34 AAGTATGAGG .......................... CGAAGTTGTATCTTTTAACAACAACAAGGCGATG 1132247 26 100.0 35 CAAGGCGATG .......................... ACTTCGAAATATTTATATTTTCCGTTTGGTAATTG 1132308 26 100.0 35 TTGGTAATTG .......................... ACAATTTTGCATAGTTCAAGACCTGACGAGCAGTG 1132369 26 100.0 35 ACGAGCAGTG .......................... ACAATTAATTGAAGGTTTCATTCCAGAGTATGTCA 1132430 26 100.0 34 GAGTATGTCA .......................... ACTCTAGTCTATGAACACAGATCTGTATTTTTTA 1132490 26 65.4 42 GTATTTTTTA .................--------- TTCGGGAAAACAGAGATATGTACGATTGAATTTTGGGCCGGG 1132558 26 100.0 35 TTGGGCCGGG .......................... ACAACTTGTTTTAAATTTCGTTCGCTCATAACTTG 1132619 26 100.0 35 TCATAACTTG .......................... ACATAGCGTTCAATTACGTAAGCTTCAGTTTCTTG 1132680 26 100.0 35 CAGTTTCTTG .......................... ACAAAGCCTCGGCGGTGCGACGGTGTTCGGTTCTG 1132741 26 100.0 35 TTCGGTTCTG .......................... ACTCCAATTCATAAATGATTTTTGTCGTATTCTCA 1132802 26 100.0 CGTATTCTCA .......................... ACACTAAAAGGT ========== ====== ====== ====== ========== ========================== 11 26 35 GGATCACCCCCGCGTGTGCGGGAAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-5.80,-6.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [46.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1438,15] Score: 0.18/0.18 # # Final direction: F [0.55,0.27 Confidence: MEDIUM] >NC_017635 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3057007 29 96.6 32 GTTATATGGT -............................ GCCTGACATTGCAGACGTTACAAATTGAGAGG 3057068 29 100.0 32 AATTGAGAGG ............................. TAATCACGTTTTAGCGCGCCCTCGTCCGGTTT 3057129 29 100.0 32 CGTCCGGTTT ............................. ATCACGATAACGCTGCTGTGATTCGTCCCCGT 3057190 29 100.0 32 TCGTCCCCGT ............................. AAGACGACGTGATCCGCAAAGTCGAAGGCACG 3057251 29 100.0 32 CGAAGGCACG ............................. TGTTTTTCTGCCGGTTTAACACGGTGCGATAA 3057312 29 100.0 32 GGTGCGATAA ............................. AAACGGGACCAGTGCTGCGATAGCCTGGAGGG 3057373 29 100.0 32 GCCTGGAGGG ............................. ACTGGCGTTGAGGCGTGGAAGCCTAATTTTTA 3057434 29 100.0 32 CTAATTTTTA ............................. TATCCAGTACCCGCCAGCGGGTTTACTGACGG 3057495 29 100.0 32 TTACTGACGG ............................. GACGTACGCTCTTCAGGGATAGAGCAGAAAGA 3057556 29 100.0 33 AGCAGAAAGA ............................. TCATTTATTTACCCCGCCGCCACTGGTCGGTCC 3057618 29 100.0 TGGTCGGTCC ............................. TGTAAACATAA ========== ====== ====== ====== ========== ============================= 11 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,6] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [641,340] Score: 0/0.18 # # Final direction: R [0,1.65 Confidence: HIGH] >NC_017638 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2881922 28 96.4 33 GTTATATGGT ..........................T. GACAGAACGGCCTCAGTAGTCTCGTCAGGCTCC 2881983 28 100.0 33 GTCAGGCTCC ............................ CTGTTTTCGCAAATCTATGGACTATTGCTATTC 2882044 28 100.0 33 ATTGCTATTC ............................ GGGCGCACGGAATACAAAGCCGTGTATCTGCTC 2882105 28 100.0 33 GTATCTGCTC ............................ TGGCTCTGCAACAGCAGCACCCATGACCACGTC 2882166 28 100.0 33 TGACCACGTC ............................ GAAATGCTGGTGAGCGTTAATGCCGCAAACACA 2882227 28 100.0 33 CGCAAACACA ............................ ATTACGCCTTTTTGCGATTGCCCGGTTTTTGCC 2882288 28 100.0 GGTTTTTGCC ............................ TCTAAACATA ========== ====== ====== ====== ========== ============================ 7 28 33 GGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [641,341] Score: 0/0.18 # # Final direction: R [0,1.65 Confidence: HIGH] >NC_017638 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2855609 29 100.0 32 NNNNNNNNNN ................AT.........A. CAGCGTCAGGCGTGAAATCTCACCGTCGTTGC 2855670 29 100.0 32 NNNNNNNNNN ...........T................. TCGGTTCAGGCGTTGCAAACCTGGCTACCGGG 2855731 29 100.0 32 NNNNNNNNNN ...............AA............ GTAGTCCATCATTCCACCTATGTCTGAACTCC 2855792 29 100.0 32 NNNNNNNNNN ............................. CCGGGGGATAATGTTTACGGTCATGCGCCCCC 2855853 29 100.0 32 NNNNNNNNNN ............................. TGGGCGGCTTGCCTTGCAGCCAGCTCCAGCAG 2855914 29 100.0 32 NNNNNNNNNN ............................. AAGCTGGCTGGCAATCTCTTTCGGGGTGAGTC 2855975 29 100.0 32 NNNNNNNNNN ............................. TAGTTTCCGTATCTCCGGATTTATAAAGCTGA 2856036 29 100.0 33 NNNNNNNNNN ............................. GCAGGCGGCGACGCGCAGGGTATGCGCGATTCG 2856098 29 100.0 33 NNNNNNNNNN ............................. GCGACCGCTCAGAAATTCCAGACCCGATCCAAA 2856160 29 100.0 32 NNNNNNNNNN ............................. TCAACATTATCAATTACAACCGACAGGGAGCC 2856221 29 100.0 32 NNNNNNNNNN ............................. AGCGTGTTCGGCATCACCTTTGGCTTCGGCTG 2856282 29 100.0 32 NNNNNNNNNN ............................. TGCGTGAGCGTATCGCCGCGCGTCTGCGAAAG 2856343 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 13 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,6] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [41.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [84,107] Score: 0/0.18 # # Final direction: R [0,1.92 Confidence: HIGH] >NC_017641 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3304265 29 100.0 32 NNNNNNNNNN G..AG.TCTA....A..G........... CAAGTGATATCCATCATCGCATCCAGTGCGTC 3304326 29 100.0 32 NNNNNNNNNN ..........T.....A............ TTGGTTGTTCGGCGTTTTGAAGAGAACAAAAA 3304387 29 100.0 32 NNNNNNNNNN ............................. GACTCAATGGCAACCGTCACGGCCTGTCCTGG 3304448 29 100.0 32 NNNNNNNNNN ............................. CCCCGCTTCGCTCGAGTACCCGCTCTATATCC 3304509 29 100.0 32 NNNNNNNNNN ............................. GCGGTCGATTTTGCTGGCGTTGTTTCGGCTGG 3304570 29 100.0 32 NNNNNNNNNN ............................. TGCATAAAAACCAGCGTGAAGAACTTTGCAGT 3304631 29 100.0 32 NNNNNNNNNN ............................. CTTTATTCCATCCCTTAATGCTTTGATGAAAT 3304692 29 100.0 32 NNNNNNNNNN ............................. AATTGATTGCTGGGTGATATTAGAAAACGTCG 3304753 29 100.0 32 NNNNNNNNNN ............................. ATGTAATGAATATTAAGCTTTTCACATTGTCC 3304814 29 100.0 32 NNNNNNNNNN ............................. TGTTGCAGCGGCGCACCGCTGACGGACTCGCC 3304875 29 100.0 32 NNNNNNNNNN ............................. CGGAACTGGTCCAGCGTTAACCGGCGGCGGAT 3304936 29 100.0 32 NNNNNNNNNN ............................. TTGCTGTATAGAGATTATCGGCGTGGGATTGT 3304997 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 13 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,6] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [22,107] Score: 0.18/0.18 # # Final direction: R [0,2.1 Confidence: HIGH] >NC_017641 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3330574 28 96.4 33 GTTATATGGT ..........................T. GACAGAACGGCCTCAGTAGTCTCGTCAGGCTCC 3330635 28 100.0 33 GTCAGGCTCC ............................ CTGTTTTCGCAAATCTATGGACTATTGCTATTC 3330696 28 100.0 33 ATTGCTATTC ............................ GGGCGCACGGAATACAAAGCCGTGTATCTGCTC 3330757 28 100.0 33 GTATCTGCTC ............................ TGGCTCTGCAACAGCAGCACCCATGACCACGTC 3330818 28 100.0 33 TGACCACGTC ............................ GAAATGCTGGTGAGCGTTAATGCCGCAAACACA 3330879 28 100.0 33 CGCAAACACA ............................ ATTACGCCTTTTTGCGATTGCCCGGTTTTTGCC 3330940 28 100.0 33 GGTTTTTGCC ............................ TTTGCCACCCGAGTCCATAAATTCTTGATATGC 3331001 28 100.0 33 CTTGATATGC ............................ CCTCATGTGGATTATATTAATATTATGGGCCGC 3331062 28 100.0 TATGGGCCGC ............................ TCTAAACATA ========== ====== ====== ====== ========== ============================ 9 28 33 GGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [641,341] Score: 0/0.18 # # Final direction: R [0,1.65 Confidence: HIGH] >NC_017656 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 3376203 31 100.0 30 GCCCGCTTTT ............................... TGATAGTTCGCACGATATTCAATCGGAACA 3376264 31 96.8 30 AATCGGAACA ..............................G TATTACTGACCAATTTCAGGAAGTCTGTGA 3376325 31 100.0 AAGTCTGTGA ............................... CTAAACATAA ========== ====== ====== ====== ========== =============================== 3 31 30 GCGGTTTATCCCCGCTGGCGCGGGGAACTCT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,7] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-14.20,-14.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [48.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [698,340] Score: 0.18/0.18 # # Final direction: R [0.59,1.51 Confidence: MEDIUM] >NC_017656 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 3350235 31 100.0 30 NNNNNNNNNN C.................AT........... AGCGGCACGCTGGATTGAACAAATCCCTGG 3350296 31 100.0 30 NNNNNNNNNN ............................... TTTATACACGGATCCTGTGTGCCGTGGACC 3350357 31 100.0 30 NNNNNNNNNN ............................... CACAAACCGCCCATCTTCCCGATTACTGCA 3350418 31 100.0 1 NNNNNNNNNN ............................... NNNNNNNNNN ========== ====== ====== ====== ========== =============================== 4 31 30 GCCGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [45.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [81,98] Score: 0/0.18 # # Final direction: R [0,1.92 Confidence: HIGH] >NC_017656 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 3376142 30 100.0 31 NNNNNNNNNN .T...........A................ CTCGACTTTAATTTTTTCGCTGCCCGCTTTT 3376203 30 100.0 31 NNNNNNNNNN .............................. TTGATAGTTCGCACGATATTCAATCGGAACA 3376264 30 100.0 31 NNNNNNNNNN .............................. GTATTACTGACCAATTTCAGGAAGTCTGTGA 3376325 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 4 30 31 GCGGTTTATCCCCGCTGGCGCGGGGAACTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,6] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [637,341] Score: 0/0.18 # # Final direction: R [0,1.65 Confidence: HIGH] >NC_017595 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 713943 36 100.0 30 NNNNNNNNNN .................................... AGACACATAGAATACATGGTAGTTATTGTC 714009 36 100.0 30 NNNNNNNNNN .................................... CTGCCGCAAATTTATTTTGTTCTAAAACCT 714075 36 100.0 30 NNNNNNNNNN .................................... TTCACAGAGCAATTTCAATCAGGCAGTCGG 714141 36 100.0 30 NNNNNNNNNN .................................... AAATCCGTCATCATCTGCCTCTAGGTTTAA 714207 36 100.0 30 NNNNNNNNNN .................................... TTAGTACCATTTTAAATGCGTATATAATAG 714273 36 100.0 30 NNNNNNNNNN .................................... TCATCTTCAATCAATGGTCGAGGGGATTTC 714339 36 100.0 31 NNNNNNNNNN .................................... CTAGCGAAAATTTCTTGGTTTGTCTCTGTTC 714406 36 100.0 30 NNNNNNNNNN .................................... AAAGAATTTTTGGTCACGTATCAGCACTTA 714472 36 100.0 30 NNNNNNNNNN .................................... TTGCCAGAATTGCACATCCCAGAGGAACCA 714538 36 100.0 30 NNNNNNNNNN .................................... ACTAAATCAAAATCAATACTATTTAACTCT 714604 36 100.0 30 NNNNNNNNNN .................................... ATTCGTGTCATTCTCAATGAGTTGCGATAC 714670 36 100.0 30 NNNNNNNNNN .................................... TGCCATATCAAGTTTTATTCCGTAAAACTC 714736 36 100.0 30 NNNNNNNNNN .................................... GCAACAAGGTTTAAATACGACGAATTACAA 714802 36 100.0 30 NNNNNNNNNN .................................... AAGCTGTGTGATTTGGACTTGATGAAGTTT 714868 36 100.0 30 NNNNNNNNNN .................................... CCGACGCTACGTTTTGAAGCTAAACGTACG 714934 36 100.0 29 NNNNNNNNNN .................................... TAGGCGACTGTGTTCCGAATATTGCGAAG 714999 36 100.0 30 NNNNNNNNNN .................................... GTTATCTGTATTGAGGTGAATATTCCCCCA 715065 36 100.0 30 NNNNNNNNNN .................................... GACGCTGTAGACAGTTCTAATACCAACACC 715131 36 100.0 30 NNNNNNNNNN .................................... AATGCGTGCAGGGAAACAAACAATTGATAT 715197 36 100.0 30 NNNNNNNNNN .................................... ATATACATGACTTCAGTACCCGAACTGAAC 715263 36 100.0 30 NNNNNNNNNN .................................... AAGTATTTCTGAAAGCGTGAGAACGTCTCT 715329 36 100.0 30 NNNNNNNNNN .................................... TGATTTAAGTTTTTGGAAGTCGTCTTGACC 715395 36 100.0 30 NNNNNNNNNN .................................... TCAGACGCTTCACCGTCTCCCACTTCAATT 715461 36 100.0 29 NNNNNNNNNN .................................... CAAGGCTTTATGCCTGCAAGCAGATATAG 715526 36 100.0 30 NNNNNNNNNN .................................... TCAGACGCTTCACCGTCTCCCACTTCAATT 715592 36 100.0 29 NNNNNNNNNN .................................... TTTGTTGGCGCAATTGACTTTTTCCAAGG 715657 36 100.0 1 NNNNNNNNNN T............T....................GT NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 27 36 29 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:69.44%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [65,43] Score: 0/0.18 # # Final direction: F [0.41,0.37 Confidence: LOW] >NC_017660 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1962050 29 100.0 32 TATGCTTAGT ............................. GCAAAACCCTCGACTGGACAAATACCGGCGCG 1962111 29 100.0 32 TACCGGCGCG ............................. GTCTGTTATGCGAATATTTTTATTCTACTTTA 1962172 29 100.0 32 TTCTACTTTA ............................. GTTTTTACTCTCTGCCGCTGAGCGTCACACGG 1962233 29 100.0 32 CGTCACACGG ............................. GACTGCATATGAGCACGAGACACCCGGTAATT 1962294 29 100.0 32 CCCGGTAATT ............................. CTATTCCCCTGACCGGACATACCCTGGACAAT 1962355 29 100.0 32 CCTGGACAAT ............................. GGCGTCAAACTCTTTGTCACTCATACCAAAGA 1962416 29 100.0 32 ATACCAAAGA ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 1962477 29 100.0 32 TTGTAAAACC ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 1962538 29 100.0 32 AAGTTAACTA ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 1962599 29 100.0 32 TTTTCAGCAA ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 1962660 29 100.0 32 TTATGTTGCC ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 1962721 29 100.0 32 CAAAACCAGC ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 1962782 29 100.0 32 CTGGTTTCAG ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 1962843 29 100.0 32 GTACGCGCGT ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 1962904 29 100.0 GTTTGGTTTT ............................. GGCGCACTGG ========== ====== ====== ====== ========== ============================= 15 29 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-13.40,-12.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [98,83] Score: 0/0.18 # # Final direction: F [1.51,0 Confidence: HIGH] >NC_017660 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1935707 29 100.0 33 TATGTTTACA ............................. GGACCGACCAGTGGCGGCGGGGTAAATAAATGA 1935769 29 100.0 32 AAATAAATGA ............................. TCTTTCTGCTCTATCCCTGAAGAGCGTACGTC 1935830 29 100.0 32 AGCGTACGTC ............................. CCGTCAGTAAACCCGCTGGCGGGTACTGGATA 1935891 29 100.0 32 GTACTGGATA ............................. TAAAAATTAGGCTTCCACGCCTCAACGCCAGT 1935952 29 100.0 32 CAACGCCAGT ............................. CCCTCCAGGCTATCGCAGCACTGGTCCCGTTT 1936013 29 100.0 32 GGTCCCGTTT ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 1936074 29 100.0 32 CAGAAAAACA ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 1936135 29 100.0 32 ACGTCGTCTT ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 1936196 29 100.0 32 TTATCGTGAT ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 1936257 29 100.0 32 AACGTGATTA ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 1936318 29 96.6 AATGTCAGGC ............................A CCATATAAC ========== ====== ====== ====== ========== ============================= 11 29 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,3] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-13.40,-12.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [341,640] Score: 0/0.18 # # Final direction: F [1.65,0 Confidence: HIGH] >NC_017664 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3026998 29 100.0 32 CCAGTGCGCC ............................. AAAACCAAACTTCTCCATAAATTCCATAGCCG 3027059 29 100.0 32 TCCATAGCCG ............................. ACGCGCGTACCGGATCGCGGACAACAAATTGC 3027120 29 100.0 32 AACAAATTGC ............................. CTGAAACCAGTTGGCTCGTTGTTCTTCTTTGG 3027181 29 100.0 32 TCTTCTTTGG ............................. GCTGGTTTTGAATCGTCCCGCGCTCGAGACGC 3027242 29 100.0 32 CTCGAGACGC ............................. GGCAACATAACGAACAAAATCAACGTCAACCT 3027303 29 100.0 32 ACGTCAACCT ............................. TTGCTGAAAAAGAAGGCTCCGGCGTTATCAGT 3027364 29 100.0 32 CGTTATCAGT ............................. TAGTTAACTTTTAGACAGAATATCCGTGTACC 3027425 29 100.0 32 TCCGTGTACC ............................. GGTTTTACAAGCTTAAATGATTTTAAATTTTG 3027486 29 100.0 32 TTAAATTTTG ............................. TCTTTGGTATGAGTGACAAAGAGTTTGACGCC 3027547 29 100.0 32 GTTTGACGCC ............................. ATTGTCCAGGGTATGTCCGGTCAGGGGAATAG 3027608 29 100.0 32 AGGGGAATAG ............................. AATTACCGGGTGTCTCGTGCTCATATGCAGTC 3027669 29 100.0 32 ATATGCAGTC ............................. CCGTGTGACGCTCAGCGGCAGAGAGTAAAAAC 3027730 29 100.0 32 GAGTAAAAAC ............................. TAAAGTAGAATAAAAATATTCGCATAACAGAC 3027791 29 100.0 32 CATAACAGAC ............................. CGCGCCGGTATTTGTCCAGTCGAGGGTTTTGC 3027852 29 100.0 AGGGTTTTGC ............................. ACTAAGCATA ========== ====== ====== ====== ========== ============================= 15 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [83,98] Score: 0/0.18 # # Final direction: R [0,1.51 Confidence: HIGH] >NC_017663 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3129183 28 96.4 33 GTTATATGGT ..........................T. GACAGAACGGCCTCAGTAGTCTCGTCAGGCTCC 3129244 28 100.0 33 GTCAGGCTCC ............................ CTGTTTTCGCAAATCTATGGACTATTGCTATTC 3129305 28 100.0 33 ATTGCTATTC ............................ GGGCGCACGGAATACAAAGCCGTGTATCTGCTC 3129366 28 100.0 33 GTATCTGCTC ............................ TGGCTCTGCAACAGCAGCACCCATGACCACGTC 3129427 28 100.0 33 TGACCACGTC ............................ GAAATGCTGGTGAGCGTTAATGCCGCAAACACA 3129488 28 100.0 33 CGCAAACACA ............................ ATTACGCCTTTTTGCGATTGCCCGGTTTTTGCC 3129549 28 100.0 GGTTTTTGCC ............................ TCTAAACATA ========== ====== ====== ====== ========== ============================ 7 28 33 GGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [641,341] Score: 0/0.18 # # Final direction: R [0,1.65 Confidence: HIGH] >NC_017664 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3053585 29 96.6 32 GTTATATGGT -............................ GCCTGACATTGCAGACGTTACAAATTGAGAGG 3053646 29 100.0 32 AATTGAGAGG ............................. TAATCACGTTTTAGCGCGCCCTCGTCCGGTTT 3053707 29 100.0 32 CGTCCGGTTT ............................. ATCACGATAACGCTGCTGTGATTCGTCCCCGT 3053768 29 100.0 32 TCGTCCCCGT ............................. AAGACGACGTGATCCGCAAAGTCGAAGGCACG 3053829 29 100.0 32 CGAAGGCACG ............................. TGTTTTTCTGCCGGTTTAACACGGTGCGATAA 3053890 29 100.0 32 GGTGCGATAA ............................. AAACGGGACCAGTGCTGCGATAGCCTGGAGGG 3053951 29 100.0 32 GCCTGGAGGG ............................. ACTGGCGTTGAGGCGTGGAAGCCTAATTTTTA 3054012 29 100.0 32 CTAATTTTTA ............................. TATCCAGTACCCGCCAGCGGGTTTACTGACGG 3054073 29 100.0 32 TTACTGACGG ............................. GACGTACGCTCTTCAGGGATAGAGCAGAAAGA 3054134 29 100.0 33 AGCAGAAAGA ............................. TCATTTATTTACCCCGCCGCCACTGGTCGGTCC 3054196 29 100.0 TGGTCGGTCC ............................. TGTAAACATA ========== ====== ====== ====== ========== ============================= 11 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,6] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [641,340] Score: 0/0.18 # # Final direction: R [0,1.65 Confidence: HIGH] >NC_017663 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3110615 29 96.6 32 CCAGTGCGCC ................A............ ACATGAATGTCGGTTCAGACCGTGTTTTTACC 3110676 29 100.0 32 TGTTTTTACC ............................. AGTGCTGGACCATTTCAAATTCACAATAGATT 3110737 29 100.0 32 ACAATAGATT ............................. GGAATGATATTTCAATAAATAATTATAACAAT 3110798 29 100.0 32 TTATAACAAT ............................. CCCTCACACCGATTCGCCAAACGGTGGAGAAG 3110859 29 100.0 32 GGTGGAGAAG ............................. AGCCGGGCGAAATTTTGATTCATCGTGATGAC 3110920 29 100.0 TCGTGATGAC ............................. CCTGAACGGT ========== ====== ====== ====== ========== ============================= 6 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [40.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [84,79] Score: 0/0.18 # # Final direction: R [0,1.92 Confidence: HIGH] >NC_017620 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1451442 36 100.0 30 CTACCAGAAG .................................... TGGTGCTGTTGGCACTGGCTCAATTCGTGA 1451508 36 100.0 30 CAATTCGTGA .................................... AGCAGGCAGATGTTGCTCAGATCGTCATTG 1451574 36 100.0 ATCGTCATTG .................................... GGTCTCAATG ========== ====== ====== ====== ========== ==================================== 3 36 30 GTTTTACTGTTACTTAAATCTTGAGAGTACAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.22%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [68.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [169,149] Score: 0/0.18 # # Final direction: F [0.64,0 Confidence: HIGH] >NC_017620 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================================= ====== 1450212 39 100.0 27 CTACCAGAAG ....................................... GAATATTCTCAGCAAGTAAACACTGAT 1450278 39 100.0 27 AAACACTGAT ....................................... GAATATTCTCAGCAAGTAAACACTGAT 1450344 39 100.0 27 AAACACTGAT ....................................... GAATATTCTCAGCAAGTAAACACTGAT 1450410 39 100.0 27 AAACACTGAT ....................................... GAATATTCTCAGCAAGTAAACACTGAT 1450476 39 100.0 27 AAACACTGAT ....................................... GAATATTCTCAGCAAGTAAACACTGAT 1450542 39 94.9 AAACACTGAT ....................................CG. ACCTATGAAATATAC ========== ====== ====== ====== ========== ======================================= 6 39 27 GTTTTACTGTTACTTAAATCTTGAGAGTACAAAAACTTA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:74.36%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [169,459] Score: 0.18/0.18 # # Final direction: F [0.78,0.18 Confidence: MEDIUM] >NC_017626 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3138159 29 100.0 32 CCAGTGCGTC ............................. ACATGAATGTCGGTTCAGACCGTGTTTTTACC 3138220 29 96.6 32 TGTTTTTACC ................G............ TCGTCGGCGTCTTCACCCGTCGCATAACGCTG 3138281 29 96.6 32 CATAACGCTG ................G............ TGCCAGCGTGTCGGCGTGCGTTTCGCGCTGCC 3138342 29 100.0 32 TCGCGCTGCC ............................. TCGATCGATAGCTGCGCGATACCTGCGGGGAT 3138403 29 100.0 32 CTGCGGGGAT ............................. GGCAGCTATCGAGGCAGTTATCGAGCGTCGCG 3138464 29 100.0 32 GAGCGTCGCG ............................. CAAAGGACACCGGGAGGCACCCGGCACCGCAG 3138525 29 100.0 GGCACCGCAG ............................. ACTAAGCATA ========== ====== ====== ====== ========== ============================= 7 29 32 CGGTTTATCCCCGCTGACGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [5,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [40.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [83,98] Score: 0/0.18 # # Final direction: R [0,0.64 Confidence: HIGH] >NC_017731 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3963734 28 100.0 32 ATAATTTATA ............................ AGAATTGCTAATGACCTTCTTGAGGCTGCTAT 3963794 28 100.0 32 AGGCTGCTAT ............................ GATTGGCAGAATACGAAAGTAGGTAATACCGT 3963854 28 100.0 32 GTAATACCGT ............................ AAGAACAACGCTCGTCCACTCTGACTGATTCC 3963914 28 100.0 32 GACTGATTCC ............................ CTAGCTGGAAAGAAGATATGATAGGGGATGGT 3963974 28 100.0 AGGGGATGGT ............................ ATTGCTATAA ========== ====== ====== ====== ========== ============================ 5 28 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.57%AT] # Reference repeat match suggestion: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 92% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [80.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [465,290] Score: 0/0.18 # # Final direction: F [1.14,0 Confidence: HIGH] >NC_017731 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3839179 28 100.0 32 TAAGCTAATT ............................ ATTAGATTCAATGGCTATAAGTTTATATTCTT 3839239 28 100.0 32 TTATATTCTT ............................ AATTAGAGAAAGGCGATTTAAAGAAAGCCAAG 3839299 28 100.0 32 GAAAGCCAAG ............................ TTAGCTAAGTCACGAACGCCTACACCTAGTTC 3839359 28 100.0 32 CACCTAGTTC ............................ TTTTATTCGTCCAGCCCTCGATTACAACCAAC 3839419 28 100.0 32 TACAACCAAC ............................ AATTAGAAGCCCACTTTATAATTGACCAGGGT 3839479 28 100.0 32 TGACCAGGGT ............................ AAAAGTGTCAGCGCTAAAGCCGATTTGTGTAA 3839539 28 96.4 32 ATTTGTGTAA ....................T....... AAACATGACGAAAATTATGCGTTGGCTAAGAG 3839599 28 100.0 32 TGGCTAAGAG ............................ CAAAAATGACAAAGCGCAGTTGGAACAATAAC 3839659 28 100.0 GAACAATAAC ............................ TGAACGTTTC ========== ====== ====== ====== ========== ============================ 9 28 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.57%AT] # Reference repeat match suggestion: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 92% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [259,274] Score: 0/0.18 # # Final direction: F [1.28,0 Confidence: HIGH] >NC_017731 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3852851 28 100.0 32 ATACGCTATA ............................ TTTAACATTGCATCTGCCGTGGTGGAGTTATT 3852911 28 100.0 32 TGGAGTTATT ............................ TTTTGAGAAGCAAGAATGTAGTCCTTTTTAGC 3852971 28 100.0 32 CCTTTTTAGC ............................ AAAAGCCTGAACACATCTAGCCTCAAAGTCTT 3853031 28 100.0 TCAAAGTCTT ............................ AATGAAACAT ========== ====== ====== ====== ========== ============================ 4 28 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 92% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [142,419] Score: 0.18/0.18 # # Final direction: F [1.24,0.18 Confidence: HIGH] >NC_017646 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 965737 20 100.0 40 NNNNNNNNNN .................... CTTAGAAAGGAACAATCTTGCAAAGGCTGTGAAAGTTGGC 965797 20 100.0 40 NNNNNNNNNN .................... CTTAGAAATTCACTGGTAACATACTCCACCCGCCCACCAT 965857 20 100.0 1 NNNNNNNNNN .................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================== 3 20 40 GTTCACTGCCGTACAGGCAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [4,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [216,574] Score: 0.18/0.18 # # Final direction: R [0,0.18 Confidence: MEDIUM] >NC_017671 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 3586865 19 100.0 20 NNNNNNNNNN ........G.......... CGGGGCAGCCTTCTTGGTGG 3586904 19 100.0 44 NNNNNNNNNN ........G.G.T...... CACTGCCTTCTTGGCGGTCTTCTTGACGGCCTTCTTGGCAGTGG 3586967 19 100.0 44 NNNNNNNNNN ........G.GA....... GGCCGGCTTGCGCGCCGCGGCCTTCTTGGCAGTCTTCTTGGTGG 3587030 19 100.0 44 NNNNNNNNNN .......GG..A....... GGTGGCCTTCTTGGCAGCGGACTTCTTGGCTACCTTCTTCGCCG 3587093 19 100.0 32 NNNNNNNNNN ................... CGCAGTGGTCTTCTTGGCGACCTTCTTCGCAG 3587144 19 100.0 20 NNNNNNNNNN ................... GGCGGTTGCCTTCTTCGCGA 3587183 19 100.0 20 NNNNNNNNNN ................... GGCAGCGGCCTTCTTCGCGA 3587222 19 100.0 1 NNNNNNNNNN ..........C..T..... NNNNNNNNNN ========== ====== ====== ====== ========== =================== 8 19 32 CCTTCTTCACTGCCTTCTT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.63%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [30.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [206,816] Score: 0.18/0.18 # # Final direction: R [0,0.86 Confidence: HIGH] >NC_017672 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 3244940 20 100.0 25 NNNNNNNNNN .................... TGTCCCGTTTCAATCCTTCCCTTTA 3244985 20 100.0 26 NNNNNNNNNN .................... GCTTTCGGGGAGGACGCTCGCTGCGA 3245031 20 100.0 27 NNNNNNNNNN .................... TTTATTGGATGTATTCGCTCCGTGCGA 3245078 20 100.0 35 NNNNNNNNNN ......CC..C......... TGGTTGTACCTGGATGCCGCTGGAAAAAAGCCTGA 3245133 20 100.0 1 NNNNNNNNNN .................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================== 5 20 28 ATCTGTTGGCTAGTACAACC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [784,582] Score: 0/0.18 # # Final direction: F [0.41,0.27 Confidence: LOW] >NC_017672 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================== ====== 6388282 21 100.0 30 NNNNNNNNNN ........T.AGCA..T.... TTCCAGGCAGATGGACCGTTGCCGGGCCGA 6388333 21 100.0 41 NNNNNNNNNN ........A...A........ TCGAGCTTCCGGTTGGGCACTTGAGCCCCCAACAAGCAGAT 6388395 21 100.0 31 NNNNNNNNNN ................T.... ATCCTGCGCTTTCGGCCAGCCACCGCTTCGA 6388447 21 100.0 41 NNNNNNNNNN ..................... GCGAGCTTCCGGTTTGGCACTTGAGCCCTCAGCAAGCGGAT 6388509 21 100.0 1 NNNNNNNNNN ..................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================== 5 21 35 TAACACGGGTTTTCCGCGTTA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.38%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.30,-2.30] Score: 0/0.37 # Array degeneracy analysis suggestion: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [35.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [180,197] Score: 0/0.18 # # Final direction: R [0,0.68 Confidence: HIGH] >NC_017737 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1563836 37 97.3 39 AATATTTCAT ....A................................ TCATCTTAGGGGTTCGCTAGTAAGAAGTCTAAATAATTA 1563912 37 97.3 39 TAAATAATTA A.................................... TCAGTATGAATATCCTTATGATGATAAATAATCTACTCT 1563988 37 100.0 44 AATCTACTCT ..................................... TTCAAATAGAATAGGCTCTTCTGGCTCATACTTAATGCCTTGAT 1564069 37 100.0 45 ATGCCTTGAT ..................................... TTAAAATATCAAATGCAATCTTCTCCAGAAAGCGATTATATTAAG 1564151 37 100.0 42 TTATATTAAG ..................................... AAATATTCTAAACAGCCTCAAAGAACAACCCATCAAGTTAAT 1564230 37 100.0 40 TCAAGTTAAT ..................................... ATTACTATAATTCTCAAGAGAAAGAGAATGAGGAAATCGC 1564307 37 100.0 38 AGGAAATCGC ..................................... CTAAAAAAGTCGCCACACAATGCGAATAATCCCTGCAT 1564382 37 100.0 40 ATCCCTGCAT ..................................... TTCTATAGAGGAAATTGCTAATAATATTTTGAGTTATTCT 1564459 37 100.0 41 GAGTTATTCT ..................................... GGTAGCTGGATTAGAATTGATTAAGATAACTCTATAACCCA 1564537 37 100.0 40 CTATAACCCA ..................................... GAGTTCAATGAGAAGTTATCAGAATTTGATTTCTCATTAG 1564614 37 100.0 37 TTCTCATTAG ..................................... TTTAAAAGCATCAAGCACTTAAATCCACCAAAAAATA 1564688 37 100.0 40 CCAAAAAATA ..................................... TAAAGAAAGAAGAGCTGCTTTAGCTAATATCCAAAATTGC 1564765 37 100.0 39 CCAAAATTGC ..................................... CCTTCTTTATCTTTACCAATAATAACGTGAGCTTGGCAA 1564841 37 100.0 39 AGCTTGGCAA ..................................... CCTTCTTTATCTTTACCAATAATAACGTGAGCTTGGCAA 1564917 37 100.0 41 AGCTTGGCAA ..................................... GATAGTTCAATGAAGATTTACGTTAGTAGAGCTGAAATTAA 1564995 37 100.0 40 CTGAAATTAA ..................................... TCCTCATATTTACATTCACATTGACCTTCATAAAAGCACA 1565072 37 100.0 40 TAAAAGCACA ..................................... TTGCTTTAATGGCTGATCATAATTATCCTATGGAGAAGGG 1565149 37 100.0 43 TGGAGAAGGG ..................................... TACTATAAGAGATAGGTTCTTATAGAGATTTGACTTAAATTGC 1565229 37 100.0 39 CTTAAATTGC ..................................... AGAGCTTATAAGTTCTTCACTAAAGATAAAGGTAAAGAG 1565305 37 100.0 43 AGGTAAAGAG ..................................... AAATTACTTAAGAGAGGTTTTGCCTATTAGAAAAATAAATTAT 1565385 37 100.0 40 AATAAATTAT ..................................... ATCTCATACTTATCATGCAGAGAGCTAATAGGGAAATAGT 1565462 37 100.0 40 GGGAAATAGT ..................................... GCAATATAATAACATGCTGAAAAGATTAAGTGTCTTAAAA 1565539 37 100.0 40 TGTCTTAAAA ..................................... TCTTACCCACTAAAATCATGCCCGCACTCACATAAGTGCC 1565616 37 100.0 40 CATAAGTGCC ..................................... AATGGGTTACCTTGATGGTTAAAATTATAAGTAGGTGTTC 1565693 37 100.0 44 GTAGGTGTTC ..................................... GACCAACCACTAAACTTTGCAAAATGCAGTAATCAACAAAAAGC 1565774 37 100.0 44 AACAAAAAGC ..................................... GACCAACCACTAAACTTTGCAAAATGCAGTAATCAACAAAAAGC 1565855 37 100.0 42 AACAAAAAGC ..................................... TTATATTAAATTCAATGTTGGAAAATACAAAGATGAAGAGTA 1565934 37 100.0 41 ATGAAGAGTA ..................................... TGGAGTTTATATTAAAAACGTAGAGAAAAGTAATTATCTTC 1566012 37 100.0 39 AATTATCTTC ..................................... TTGCTAAAAAGCCTTCACTATGCGCCAATGCACTCCAAG 1566088 37 100.0 40 GCACTCCAAG ..................................... TTATTATGAGTAATGTTTTTGTTAGAACGGATTATAAAAC 1566165 37 100.0 44 ATTATAAAAC ..................................... TCACAAATTTTATTTTGTAGCTCTTGGCATTGAGACATTGTTGT 1566246 37 100.0 45 ACATTGTTGT ..................................... TCTAAAGGCGTGAATTGATTAAAAATTTGTGAAATTTTAGGATAA 1566328 37 100.0 41 TTTAGGATAA ..................................... TTCGCTTAAAAGCATTTGATAAATGCGTATTGCATAATAGC 1566406 37 100.0 GCATAATAGC ..................................... AGCCTTTATC ========== ====== ====== ====== ========== ===================================== 34 37 40 GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.16%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.40,-4.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [80.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [310,445] Score: 0/0.18 # # Final direction: R [0.27,5.28 Confidence: HIGH] >NC_017761 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1346374 36 100.0 30 NNNNNNNNNN A................................... ATGACAAGTCTATACCCGTTTTTATACTCG 1346440 36 100.0 30 NNNNNNNNNN .................................... ATAGAGATGAAAAAGCAAAAAACTGCCACA 1346506 36 100.0 31 NNNNNNNNNN .................................... TGGTATAATATAAAGGGTGTAGCGAAATACT 1346573 36 100.0 30 NNNNNNNNNN .................................... TTTACGCAGTTACGATGATAATGGGTATCT 1346639 36 100.0 30 NNNNNNNNNN .................................... TGGAATACTCGCTATAGAGATGAGGATCTT 1346705 36 100.0 30 NNNNNNNNNN .................................... ATGACAAGTCTATACCCGTTTTTATACTCG 1346771 36 100.0 30 NNNNNNNNNN .................................... ATAGAGATGAAAAAGCAAAAAACTGCCACA 1346837 36 100.0 30 NNNNNNNNNN .................................... TCTAGCACAATTTAACAAGTTTAACCGCAA 1346903 36 100.0 30 NNNNNNNNNN .................................... TAAAGGCTTTGCCAATGAAATGCTAAAGAA 1346969 36 100.0 30 NNNNNNNNNN .................................... ACACTTGATTTAGAAACTTTAAAAGATGAC 1347035 36 100.0 30 NNNNNNNNNN .................................... AGCGTCCATTCCGTCTTCCAATCTTTGCTT 1347101 36 100.0 30 NNNNNNNNNN .................................... AAGAGCATTTTACAAGCAATATTATGTAGA 1347167 36 100.0 30 NNNNNNNNNN .................................... CTAAATCACTTCTTGCCTACGAGATTCTTC 1347233 36 100.0 30 NNNNNNNNNN .................................... CTAAATCACTTCTTGCCTACGAGATTCTTC 1347299 36 100.0 30 NNNNNNNNNN .................................... CAAACACGCTAGGTATCTAAATAGTGCTAA 1347365 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 16 36 30 GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:69.44%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [33,159] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_017761 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================== ====== 155005 18 94.4 32 ATTACCATAG .................A GCCATTGATTGATTCTTTGGCTCAAATTCCCC 155055 18 100.0 38 CAAATTCCCC .................. CTACTATTAATTATTTTTGATAGATACAAACTCCCATA 155111 18 100.0 AACTCCCATA .................. ATCCTGGCTC ========== ====== ====== ====== ========== ================== 3 18 35 ATTCTTATGGAGAGTTTG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [75.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [627,6976] Score: 0.18/0.18 # # Final direction: R [0.27,0.59 Confidence: MEDIUM] >NC_017761 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1749174 37 100.0 29 ATTAATCAAA ..................................... GATTTTGGCAAGTAATGATTATTTGGTAG 1749240 37 100.0 29 TATTTGGTAG ..................................... AACCTTTGCTTCTGTCCTTGCTATACTTG 1749306 37 100.0 29 GCTATACTTG ..................................... AACCTTTGCTTCTGTCCTTGCTATACTTG 1749372 37 100.0 GCTATACTTG ..................................... ACACGCTCACAGCCCATAAGCTAGATTCA ========== ====== ====== ====== ========== ===================================== 4 37 29 GTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAACT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:51.35%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.00,-2.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [769,244] Score: 0.18/0.18 # # Final direction: F [0.55,0 Confidence: HIGH] >NC_017761 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================== ====== 538864 18 94.4 32 ATTACCATAG .................A GCCATTGATTGATTCTTTGGCTCAAATTCCCC 538914 18 100.0 38 CAAATTCCCC .................. CTACTATTAATTATTTTTGATAGATACAAACTCCCATA 538970 18 100.0 AACTCCCATA .................. ATCCTGGCTCAGAGTG ========== ====== ====== ====== ========== ================== 3 18 35 ATTCTTATGGAGAGTTTG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [75.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [867,6560] Score: 0.18/0.18 # # Final direction: R [0.27,0.59 Confidence: MEDIUM] >NC_017764 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1070806 28 96.4 32 TTGCAGATAT .............C.............. TTCTCGACTTCTTTTGAACAGTCCACGATGAA 1070866 28 100.0 32 CCACGATGAA ............................ CTTCCGGCGTGACCGCTTTTTTAAAAATTAAA 1070926 28 100.0 32 AAAAATTAAA ............................ AAGTGAACTCTTGTGACACTGGTGCGCCATTA 1070986 28 100.0 32 TGCGCCATTA ............................ TTGGATATTGATAAAAATCAGGCGCTTTAAAC 1071046 28 100.0 32 CGCTTTAAAC ............................ TCCCGCTGTATTCGAACGCCCGCAGGTAACGA 1071106 28 100.0 CAGGTAACGA ............................ TAAATGAATT ========== ====== ====== ====== ========== ============================ 6 28 32 TTTCTAAGCCATCTACACGATGGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:57.14%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.00,-6.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [63.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [231,141] Score: 0/0.18 # # Final direction: R [0,1.05 Confidence: HIGH] >NC_017764 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1618012 28 100.0 32 NNNNNNNNNN AA.TG..A.................... CGAGTTTTGCCAACAGTTTTCGCAAAATTTCA 1618072 28 100.0 32 NNNNNNNNNN ............................ CAGAGTTCAAGTCAGCACATCGACTACAAGAT 1618132 28 100.0 32 NNNNNNNNNN ............................ TCATTAAGCGTCTTAGTAACGGAAAATATAAA 1618192 28 100.0 32 NNNNNNNNNN ............................ GGTGCTTTAATCTAATTAAAGGCAGTTATGAT 1618252 28 100.0 32 NNNNNNNNNN ............................ GAAGTGGAAATTGACGAAGGATTAAAAAATCG 1618312 28 100.0 32 NNNNNNNNNN ............................ ACAGTTAAAAGTGGTGATGTCGTCGTGCTAGG 1618372 28 100.0 32 NNNNNNNNNN ............................ AGCTGATGGGAATTATTCCAACAAATGCGGCA 1618432 28 100.0 32 NNNNNNNNNN ............................ TTAAACGGCATTTAAACACTATCAAAGGAGTA 1618492 28 100.0 32 NNNNNNNNNN ............................ TTGAGGGTGGCAAACTCAAAAGAAAAACAGTG 1618552 28 100.0 33 NNNNNNNNNN ............................ AACAAGTGCCAGTGTGGCGTGCCGTCGTGGTGC 1618613 28 100.0 32 NNNNNNNNNN ............................ CATCGCAATGGAAAAGATGCGTTGTGAAAAAT 1618673 28 100.0 32 NNNNNNNNNN ............................ AAGATTTTCTAATATCAAATTCAGTAAGTTCT 1618733 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 13 28 32 TTTCTAAGCTGCCTATACGGCAGTTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:57.14%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [53,149] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_017766 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 40627 29 100.0 32 CGATGACCTC ............................. AGTGCCTCGAAGACGAGGGTGGAGGCTGCGGC 40688 29 100.0 32 AGGCTGCGGC ............................. CGGGTTGCGGGGGCGTGGATGGTCGTGGTCAT 40749 29 100.0 32 TCGTGGTCAT ............................. CTTCTTGGCGGCCTTGTTGATGCGCTTCTTGT 40810 29 100.0 CGCTTCTTGT ............................. ACTCGATGGCC ========== ====== ====== ====== ========== ============================= 4 29 32 GGGACCATCCCCGCACGCGCGGGGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,1] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [25.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [87,423] Score: 0.18/0.18 # # Final direction: R [0.37,0.45 Confidence: LOW] >NC_017766 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 51788 24 100.0 37 NNNNNNNNNN ........................ ATCCGCCGCCCTGCCCCGCCTGAGCGCGAACGTGCCG 51849 24 100.0 37 NNNNNNNNNN ........................ ATCCCTGCGGGAGGCCATCCGCCGCGCTGTCTGTGAG 51910 24 100.0 37 NNNNNNNNNN ........................ ATCCCAGTTGCAGACGCTCCCGCTCGCCGCTCACCAG 51971 24 100.0 37 NNNNNNNNNN ........................ ATCCCCCCGCCGCGCTCGCCCTGGCCACTCTGGGCAT 52032 24 100.0 37 NNNNNNNNNN ........................ ATCCCACCGTCCAGTCCAAGTACACAGCTCCCTACCG 52093 24 100.0 37 NNNNNNNNNN ........................ ATCCCCTGAACTTCGGCAAGGCGGTCGGTGCACGCTG 52154 24 100.0 37 NNNNNNNNNN ........................ ATCCCCAGGCGGCGCGCACCGTCGCCGACACCCACGA 52215 24 100.0 37 NNNNNNNNNN .................A...... ATCCCGAGCTGTGCACCGCCACGATCAACGACCGACG 52276 24 100.0 37 NNNNNNNNNN ..............T......... GTCCCGGTACTCGCGTCAAGGCGCGCGGGTCAGGCGT 52337 24 100.0 36 NNNNNNNNNN ...........AGG......ATG. TCCCACCGCCAACGTGGTGGCCGAACGGCTGCGCCC 52397 24 100.0 37 NNNNNNNNNN ...........AGG.......... GTCCCTGGCGGTGCATGCCCGTGCTCACCGGCGCCAG 52458 24 100.0 37 NNNNNNNNNN .......................T GCCCCGATACCAGCAATCTCTGTGAGTCGGCGTCCCG 52519 24 100.0 1 NNNNNNNNNN ............T..........A NNNNNNNNNN ========== ====== ====== ====== ========== ======================== 13 24 36 GTGCTCCCCGCGCCCGCGGGGATG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-5.80,-6.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [50.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [125,750] Score: 0.18/0.18 # # Final direction: F [0.68,0.55 Confidence: LOW] >NC_017766 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 50725 29 100.0 32 NNNNNNNNNN ............................. CGCCTGGTTAGCGTCGACGTTACTTTCGAGGT 50786 29 100.0 32 NNNNNNNNNN ............................. CGGTGCTAGAGCCGCCCCCACTACCCACTACC 50847 29 100.0 32 NNNNNNNNNN ............................. TGTTGCAGGCGACGGCGCAGGAGATCGTGGCT 50908 29 100.0 32 NNNNNNNNNN ............................. GTCACACAGGTGATCAGGACCGTCTTCCTCGC 50969 29 100.0 32 NNNNNNNNNN ............................. AGCATCGATCGCAAGCCGTGCTCGAAGCGCCG 51030 29 100.0 32 NNNNNNNNNN ............................. CCCACGAAGCCCCCGTCCGAGTCTGGGCGGGG 51091 29 100.0 32 NNNNNNNNNN ............................. CAGCTCGGCGCGCAGGAACGGTCCGGGCTGCG 51152 29 100.0 32 NNNNNNNNNN ............................. CAGTCCAGGCCGTCCTTGATGTGACCGACCGT 51213 29 100.0 32 NNNNNNNNNN ............................. GAGGTGAGGCTCGTCGGCCAGGGCGCCGGCAA 51274 29 100.0 32 NNNNNNNNNN ...........AGG..G............ CAGCGTCCCGGACCGTGCAAGATGCCCCAGTC 51335 29 100.0 32 NNNNNNNNNN .......T..AAGG............... ACACCCCACCCCATCCACAGCAGTCAGGAAGA 51396 29 100.0 32 NNNNNNNNNN ..........AAGG............... GAGTCCGGGCTGTGGGCGTTGAAGGGCTACAA 51457 29 100.0 32 NNNNNNNNNN .............GT.............. GTCGACGTCGCGTTCGTGCCGCGCTCCGCGTT 51518 29 100.0 32 NNNNNNNNNN ..A.....T....GT.........CC..A CCTTGACCTTGTCGACCTTCATCTCGAACAGG 51579 29 100.0 1 NNNNNNNNNN TGCTC...GC..TT...........C..T NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 15 29 32 GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-33] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [428,1685] Score: 0.18/0.18 # # Final direction: F [0.68,0.55 Confidence: LOW] >NC_017766 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 55198 29 100.0 32 GTCAGTGAGT ............................. CCGCTCAGCTCGCACCGCCGGGCGGCGCGGAC 55259 29 100.0 32 CGGCGCGGAC ............................. CCATCAGTACTCCCGACAGAGCCCACCGGTTC 55320 29 100.0 32 CCACCGGTTC ............................. GCGGGTGCCAATGTCCTTGCTCATCAGGGGTT 55381 29 100.0 32 ATCAGGGGTT ............................. GACATGCGCTCGCCCCTGGAACGGCAAGGGCG 55442 29 100.0 32 GGCAAGGGCG ............................. CAGGTGCGTGCACGGCGCGTGCAGTGGGCCGG 55503 29 100.0 AGTGGGCCGG ............................. AAGGTGACGA ========== ====== ====== ====== ========== ============================= 6 29 32 GTGCTCCCCGTAGGCGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-10.50,-9.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [46.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [86,288] Score: 0.18/0.18 # # Final direction: F [0.64,0.55 Confidence: LOW] >NC_017766 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 55971 29 100.0 32 NNNNNNNNNN ............................. CTCGACGGGTTCGCCGAGAAGGTGCTACACCC 56032 29 100.0 32 NNNNNNNNNN ............................. CCCATGGCTTGGTTCAAGGACGTGGACCTGGA 56093 29 100.0 32 NNNNNNNNNN ............................. CCCACTCTGGCACTGTTTCAGGCCATTGCGTA 56154 29 100.0 32 NNNNNNNNNN ............................. GACTTCCCGCGAAAGTGTTGCGAACCTAGGGT 56215 29 100.0 32 NNNNNNNNNN ............................. TCCGGTCGTGCACGACTGCGCCGACTGCGGAC 56276 29 100.0 31 NNNNNNNNNN ....................ATG.TC..G GCCACAATCGCGACCTGTTCGAGAACAAGGC 56336 29 100.0 32 NNNNNNNNNN ............................. GCTCCTAGGTGGGGTGCCCGCCGGGGACGTGG 56397 29 100.0 32 NNNNNNNNNN ............................. CACGCTGGGACCTCACCCTCGGCGCGGCCTCC 56458 29 100.0 32 NNNNNNNNNN ............................. GCCACGGCCTCCCGGCCGGAGAGCTTGTGCCG 56519 29 100.0 32 NNNNNNNNNN ............................. GCGTCGTAGAGGCGGCGATCGTTGCTGCCCTG 56580 29 100.0 32 NNNNNNNNNN ............................. CTGCCTGAGGGGGTCCCCTATCCGAAAGAAAC 56641 29 100.0 32 NNNNNNNNNN ............................. GGCAGACCAGGGCGATGCGGGAACTGTCCCGG 56702 29 100.0 32 NNNNNNNNNN ............................. GAGGTCGCCAGTCGAACGGCACCGACTTCACC 56763 29 100.0 1 NNNNNNNNNN ..............T...........T.. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 14 29 31 GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [46.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [20,105] Score: 0.18/0.18 # # Final direction: F [0.68,0.55 Confidence: LOW] >NC_017766 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 57048 29 100.0 32 GTCAGTGAGT ............................. GACGTGCTCACTTGGCGATCTCCTTACGGGCG 57109 29 100.0 32 CTTACGGGCG ............................. GACGAGGTAGTCACCCTGGTCCGGATCCGTCG 57170 29 100.0 32 GGATCCGTCG ............................. ATCGAGAATCATTTCGTCGTCGACCCCGCGAA 57231 29 100.0 33 ACCCCGCGAA ............................. CCCACGAAGCCCCCGTCCGAGTCTGGGCGGGGG 57293 29 100.0 32 TGGGCGGGGG ............................. AGGTTCCCGTACTGGCGGAGCGGCAGGCCGAA 57354 29 100.0 32 GCAGGCCGAA ............................. GTCTGGCCCAACTGGTGCCAGGATCATCCCCA 57415 29 100.0 32 ATCATCCCCA ............................. CAAGGTGTCAGCACGAGACACAGGGGAGGCCA 57476 29 96.6 32 GGGGAGGCCA ...............A............. GGCGGCCAGTGCGTTGAGGTCGCCACCAACCT 57537 29 100.0 CCACCAACCT ............................. CGGGCCCGGT ========== ====== ====== ====== ========== ============================= 9 29 32 GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [48.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [20,1458] Score: 0.18/0.18 # # Final direction: F [0.68,0.55 Confidence: LOW] >NC_017766 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 57883 29 100.0 32 NNNNNNNNNN ............................. ACCGCGACCTTCCGGTGGAGGGCGTGCAGTTC 57944 29 100.0 32 NNNNNNNNNN ............................. GGCCGCATCACCGGCCCCGGCTTCGAACTGCG 58005 29 100.0 32 NNNNNNNNNN ............................. TGACCGCAGGCCGCCGCCACGTCGCGCGCCTT 58066 29 100.0 31 NNNNNNNNNN ............................. GACGCGCTCGTGAAGGTGGCCAAGCAGTACC 58126 29 100.0 32 NNNNNNNNNN ............................. TACGAGAACGGCCGCTCCGAGCCGAAGTCGCC 58187 29 100.0 32 NNNNNNNNNN ..................G.......... GACCCTGGTACCGGATCACCGACCGGTACCAG 58248 29 100.0 32 NNNNNNNNNN ..................G.......... GCGACTCGGGCCGCCATCGAACGTGCCGAGGC 58309 29 100.0 32 NNNNNNNNNN A.................G.......... GAAGGCGCGATGGCCGGACGCCGGGCGATCGA 58370 29 100.0 32 NNNNNNNNNN ..............G...G.A........ CCGCCGACGATCAGGCCGAACGTGCCGGTCAG 58431 29 100.0 32 NNNNNNNNNN ..................G.........T GCGGGTGGGTCGCCGCCGACCGGCGCACCGCC 58492 29 100.0 32 NNNNNNNNNN ......T...........G..GA...... GACTCTGGGACCACGATGGTGGTCAACGTCCT 58553 29 100.0 32 NNNNNNNNNN .......T...GCC............... CATTTCGATCCAGAGCACGCCGGCCGCCGCCA 58614 29 100.0 32 NNNNNNNNNN ...........GCC..T.G.........T GCCCTGCACCACCACCATTTCGTCGGCCGGCG 58675 29 100.0 32 NNNNNNNNNN ...........GC.T...G.......... ATCACCCCCGTGCCGAACACGCCGACGTCGGT 58736 29 100.0 1 NNNNNNNNNN ...........GC.T...G.......GG. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 15 29 31 GTGCTCCCCGCAGGCGCGAGGATGGTCCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.70,-9.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-26] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [46.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [855,259] Score: 0.18/0.18 # # Final direction: F [0.86,0.74 Confidence: LOW] >NC_017768 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 758494 36 100.0 30 GGATAAGCTT .................................... TGAAGTGCAAGCTTACGTGACTGACTCGCG 758560 36 100.0 30 CTGACTCGCG .................................... TAATGTAAAAGGCTTATATGAATAATAAAT 758626 36 100.0 30 AATAATAAAT .................................... AGACGAGATGTACAATCGTGTTTCTCTAAG 758692 36 100.0 30 TTTCTCTAAG .................................... TAATTCCAAGTCAGCTTTCAACGCTTTTAG 758758 36 100.0 30 ACGCTTTTAG .................................... TTGTCCCATCAACAAAAGTTCCTTTTTCAG 758824 36 100.0 30 CCTTTTTCAG .................................... GAGAAGTTAAAAAAATATGACTGGCAAGCT 758890 36 100.0 30 CTGGCAAGCT .................................... TACCGCTTATGCAGATGATGCCGAAGGAAA 758956 36 100.0 CCGAAGGAAA .................................... AATAGAATCAA ========== ====== ====== ====== ========== ==================================== 8 36 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [221,150] Score: 0/0.18 # # Final direction: F [0.37,0.27 Confidence: LOW] >NC_017768 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 430283 32 100.0 34 ACTACGCGCC ................................ TCAAACAACATGCTTATCCGGTGATAACACTGAC 430349 32 100.0 34 TAACACTGAC ................................ TGTTACGTGCTCCAAAAAATCAATTGGTACAGTC 430415 32 100.0 34 TGGTACAGTC ................................ TTTTAATGTCTCATAAACTTGGTTGCCATCTATA 430481 32 100.0 35 GCCATCTATA ................................ AAATTTGGGGCAGTGATTATGACGGGACTTACTTT 430548 32 100.0 33 GACTTACTTT ................................ AATTTGGAAGTGTCAAAAAAGGCCTCCCGGAAC 430613 32 100.0 34 CTCCCGGAAC ................................ CAATGGTGTAGCTGAAATCTCACAACAAAAAGCT 430679 32 100.0 34 ACAAAAAGCT ................................ TCTAGCAGTGTAGTTGTTGTTGTTTTGTTACGAT 430745 32 100.0 34 TTGTTACGAT ................................ ATCTACTTTGATAAAGACACAAAAACACTTGACT 430811 32 100.0 35 ACACTTGACT ................................ CAAAAAGTCGATTGGTACAGTCCAACTTTGATTAC 430878 32 96.9 35 CTTTGATTAC .....C.......................... AATAGATGCGTCCACTATAATTACACCTACCATCT 430945 32 96.9 34 CCTACCATCT .....C.......................... TAAAGCTGATGTAAAAGCCGATAGTCCTTTGCGC 431011 32 96.9 34 TCCTTTGCGC .....C.......................... CTAAGCGCTCGGAGGCCGTGTTATTAGATAACTT 431077 32 96.9 36 TAGATAACTT .....C.......................... TTAATTTGTTGGGTGGAGCTACTTCTATCACTAAAG 431145 32 96.9 33 ATCACTAAAG .....C.......................... ACAACGAAAAAACACTCAGTGATTTTGGATTTA 431210 32 96.9 TTTGGATTTA .....C.......................... TGAAATCAAT ========== ====== ====== ====== ========== ================================ 15 32 34 GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [6,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.10,-5.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [149,34] Score: 0.18/0.18 # # Final direction: F [5.05,0.37 Confidence: HIGH] >NC_017778 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 109909 24 100.0 21 NNNNNNNNNN ........................ CCCTCTACTTACAGGACGACC 109954 24 100.0 21 NNNNNNNNNN ........................ ACTTCTATTTGCAGAGTAATT 109999 24 100.0 21 NNNNNNNNNN ........................ CCCCCTACTTACAGGACGACT 110044 24 100.0 1 NNNNNNNNNN .C...........C....AAC.AC NNNNNNNNNN ========== ====== ====== ====== ========== ======================== 4 24 21 TTCACGATCATAATTTGGTCTTTG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [400,697] Score: 0/0.18 # # Final direction: F [0.41,0 Confidence: MEDIUM] >NC_017790 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 3087902 19 100.0 38 NNNNNNNNNN ................... AAACGGCCCTCGCCCATCCGGTTTCCGTCGCGGCGCGG 3087959 19 100.0 26 NNNNNNNNNN ................... TCGCGGCGGCCCTCATCCCGGCGGCC 3088004 19 100.0 1 NNNNNNNNNN ................... NNNNNNNNNN ========== ====== ====== ====== ========== =================== 3 19 32 CTCGAAGCGGCGGCGCTCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [2,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [18.3-15.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [794,1099] Score: 0/0.18 # # Final direction: F [0.64,0 Confidence: HIGH] >NC_017791 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 144257 37 97.3 36 GGCCAGCGCA .......................A............. TGTTCAGGGTGTCCGCAAGGCTGCGGGCGGCGTCCT 144330 37 100.0 35 GCGGCGTCCT ..................................... GCCCCGGAAGCAGTTCGGGAGACCCGCTTCGAAGT 144402 37 100.0 37 GCTTCGAAGT ..................................... CGGCCTGCTGCGGCCCGCTCACGCGCCCGCCTCGGCA 144476 37 100.0 36 CGCCTCGGCA ..................................... GGCACTGTGGATTGAGGACCAGAGTGAGCGTGCCGA 144549 37 100.0 37 AGCGTGCCGA ..................................... AGCTCGTCACCCGTGGCGGCGACCACGAACACGCTGG 144623 37 97.3 35 AACACGCTGG ..........................C.......... GTCGAGTCCTTCCGGTAGCCGCGCACGATGCTCAG 144695 37 100.0 37 CGATGCTCAG ..................................... CGAACAGGTCCACGTCTACGCCTTCGCGGAACGCCTG 144769 37 100.0 34 GGAACGCCTG ..................................... TGGACGACTTCATTGACCGGTACTGTGACATTCA 144840 37 100.0 36 GTGACATTCA ..................................... GCTCCGGCGGTGGCCGAGTGAGCGCCGATGCGGCCG 144913 37 100.0 35 GATGCGGCCG ..................................... AACCCGTCCCCGCACGGCCGGTGCGCCAGGTACTC 144985 37 100.0 36 CCAGGTACTC ..................................... TGGGACAGAACTACTTCCAGCCGAGCAACACCTACT 145058 37 100.0 35 AACACCTACT ..................................... ATGCGCTGACGTGTGATCCGGAGAATCATCATCCG 145130 37 100.0 35 TCATCATCCG ..................................... CAGAACGTCGAACACCTGTACCCGACTATCGACAA 145202 37 100.0 CTATCGACAA ..................................... CGCGTATTCC ========== ====== ====== ====== ========== ===================================== 14 37 35 GTTTCAGTCCCCTATCGCCCGGGGAGTACGTTGCGGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.90,-9.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [28.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [45,269] Score: 0.18/0.18 # # Final direction: R [0,1.6 Confidence: HIGH] >NC_017791 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 159105 37 97.3 32 TCGGGTTTCA ..................-.................. GGCGGCGGCATAATGATGTTTACTCAGCCCAT 159174 37 94.6 35 CTCAGCCCAT .....G....................T.......... CGGCCCGACTTCGCCTGTAATCAGGCACTCGGCTT 159246 37 100.0 35 CACTCGGCTT ..................................... CTGCGCGTCGCCCAGCACGGCTGTGCCTGCGATGA 159318 37 100.0 34 CCTGCGATGA ..................................... GGCACCCTTGTGCTCGAGAGTCAGGTAGATATGG 159389 37 100.0 35 GTAGATATGG ..................................... CACAGGACAACGCTACACCCCGCATACCTGACTAG 159461 37 100.0 ACCTGACTAG ..................................... AGTTATGATAC ========== ====== ====== ====== ========== ===================================== 6 37 34 GTTTCAATCCTCGGCCCACCCGAAGGCAGGCCGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [7,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.20,-15.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [31.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [416,388] Score: 0/0.18 # # Final direction: R [0.37,5.55 Confidence: HIGH] >NC_017803 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3809022 36 100.0 42 NNNNNNNNNN .TAACC.......C...................... GCCGTTGGTGGCCGGGTGCTTGTGGTGGTGCTTGCTGCCGGT 3809100 36 100.0 30 NNNNNNNNNN .................................... ACTGCCCGTCGTGTGGTGCTTGCTGCCGGT 3809166 36 100.0 42 NNNNNNNNNN .................................... GCCGTTGGTGGTCGGGTGCTTGTGGTGGTGCTTGCTGCCCGC 3809244 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 4 36 38 GCCGTAGCCGGTGTTGTTGTTCGCGGCGGCTGCGCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-11.20,-5.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [21.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [312,400] Score: 0/0.18 # # Final direction: R [0.37,1.05 Confidence: MEDIUM] >NC_017845 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 451274 29 96.6 32 TACTTTTAGA ..C.......................... TCCAATTTAAATATGCTTTTTTTACCAATTCC 451335 29 96.6 33 TACCAATTCC ..C.......................... GACGAGGAATCTGATAACGCATTCCGTGTTCGC 451397 29 100.0 32 CCGTGTTCGC ............................. GTCGTTCATCAGGTCATGCTCTGACAGCTTCG 451458 29 100.0 32 GACAGCTTCG ............................. CAGACCCTCTTTGGTATACTTCAATTTTATAA 451519 29 100.0 32 AATTTTATAA ............................. CAACGACATCGAAATCAGCGCTAAATATTTCT 451580 29 100.0 32 AAATATTTCT ............................. GATGCGATGAAACACACGTATCTGGGCTATGC 451641 29 100.0 33 TGGGCTATGC ............................. TGGAAGGCTGGGCGCGTGAAATCGGGTGCAATC 451703 29 96.6 32 GGGTGCAATC ............................A TCTGTCATTGGCTGTCGGGGAGGTTCACTGCC 451764 29 100.0 32 GTTCACTGCC ............................. CCCCAGCGCATAAACGACGCTATACCACAACC 451825 29 100.0 32 TACCACAACC ............................. TCAGCCCCCCAAACAAACACAGCCGCTATCCA 451886 29 100.0 32 CCGCTATCCA ............................. TCTGCGTTAACAGGCCGCTTGTTTGGGCGTTT 451947 29 100.0 32 TTGGGCGTTT ............................. ATAAATCATATTCAGAGTTGGAATTCTTGAAT 452008 29 100.0 32 ATTCTTGAAT ............................. CTGTGGCTGAGCTATTTCGTGCGCGTCGTTGA 452069 29 100.0 32 GCGTCGTTGA ............................. AGAAAAATACTCAATCGTGGTCGTGCCGAAAC 452130 29 100.0 32 GTGCCGAAAC ............................. CTGTTTGGGTTGATGAGAAGGAGAGGACTTTG 452191 29 100.0 32 GAGGACTTTG ............................. GATATGCAAAACGTCATTATCGGCGGCATTCT 452252 29 100.0 GCGGCATTCT ............................. GTTGCCGAAA ========== ====== ====== ====== ========== ============================= 17 29 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-13.40,-12.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [86,324] Score: 0.18/0.18 # # Final direction: F [1.51,0.59 Confidence: MEDIUM] >NC_017803 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 6050642 28 100.0 20 NNNNNNNNNN ............................ CCACCACCCCGACCGCCGAA 6050690 28 100.0 20 NNNNNNNNNN ............................ AGGACGACCTCGCGACCGAA 6050738 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 3 28 20 GACGACCTCACGCCCAACCCGACAGCCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [7,1] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [28.3-28.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [649,506] Score: 0/0.18 # # Final direction: NA [0.37,0.37 Confidence: NA] >NC_017845 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 454700 29 100.0 32 GCGGAACAGC ............................. GCTGCACGCCAGCCTTCCTACTGGATTCAGTT 454761 29 100.0 32 GGATTCAGTT ............................. ATTAGGGCGGATGCGGCAGTAACGCCAACCCA 454822 29 100.0 32 CGCCAACCCA ............................. GGCTGCGATGTGGTCGATGAGGCGCTTAACAT 454883 29 100.0 32 CGCTTAACAT ............................. GCGTCTTGTGCAGCATTACGATAAAAGTTACC 454944 29 100.0 32 AAAAGTTACC ............................. CCAGCTCTTTCTTTCTTGACAGCTTCATAAAA 455005 29 100.0 32 CTTCATAAAA ............................. GCCGGGCTGGAGATTATCGGTAATGCGGAACA 455066 29 100.0 32 ATGCGGAACA ............................. GTCTCGACTACTAATAGGATCAATCATGCGGA 455127 29 100.0 32 ATCATGCGGA ............................. GGCTGCGATGTGGTCGATGAGGCGCTTAACAT 455188 29 100.0 32 CGCTTAACAT ............................. GTGAAAACCTCCGCTACTACCTTTGTTCTCTA 455249 29 96.6 TTGTTCTCTA ...........................G. TTATACCC ========== ====== ====== ====== ========== ============================= 10 29 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-13.40,-12.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [33.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [330,183] Score: 0/0.18 # # Final direction: F [1.65,0.27 Confidence: HIGH] >NC_017806 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================== ====== 4432 22 100.0 39 NNNNNNNNNN ...................... CGCAAGGGCACTGGGAAGACGATCATCGACAGCAACGGT 4493 22 100.0 39 NNNNNNNNNN ...................... TGCGCCTCCTCGACCATCTGGTAGAAGCGGCAGTCCGGT 4554 22 100.0 39 NNNNNNNNNN ...................... CGCCAGCCAGACGAGAACCATTCCCACTAATCCCCCGGT 4615 22 100.0 39 NNNNNNNNNN ...G.................. CGCTCACGTAGTTTGCGGATGTTGTCAGTCTCCACCGGT 4676 22 100.0 39 NNNNNNNNNN ...G.................. CGCTGCATGTTCAGGTTGAGGTTCATGGGATGCTCCGGT 4737 22 100.0 39 NNNNNNNNNN ...................... CGCGACCTGGGAATCAGCCCTTTCATGGAGGAGAACGGT 4798 22 100.0 39 NNNNNNNNNN ...................... CGCTTCGTATCAACGGGTCACAACTCTACGCCATTCGGT 4859 22 100.0 39 NNNNNNNNNN ...................... CGCCACCACGGCTGCGCCAGATCCTCGCCAGCTCTCGGT 4920 22 100.0 39 NNNNNNNNNN ...................... CGCGGCCGGCCGCCGGGCCGCCGCGCCGCCGGAACCGGT 4981 22 100.0 39 NNNNNNNNNN ...................... CGCGGGCCAGTAATGAGGGCATCACCGTTCAGGCCCGGT 5042 22 100.0 39 NNNNNNNNNN ...................... CGCCAGCCGACCAAAGTCGCCCCGTCCGAGTTTGCCGGT 5103 22 100.0 39 NNNNNNNNNN ...................... CACAGGTGAACGCCGTGTCAGAGGAACAGGGCGGGCGGT 5164 22 100.0 39 NNNNNNNNNN ...................... CGCCAGATAGGGCTGATCCCCCTGGAGCAGGGCGTCGGT 5225 22 100.0 39 NNNNNNNNNN ...................... CGCGGCGAGCGCGTCCGGCGTGAGGTAGACCGTCACGGT 5286 22 100.0 39 NNNNNNNNNN ...................... CGCAGCAGGGGGTCGGTGAACGTCTCGATGATGTACGGT 5347 22 100.0 39 NNNNNNNNNN ...................... CGCAGGGCCTGGAAGACGCCGAACTGAAGACCGCGCGGT 5408 22 100.0 39 NNNNNNNNNN ...................... CGCTCATGCCCAAAGTGGCCCAGGCGAAAGCCAAACGGT 5469 22 100.0 39 NNNNNNNNNN ...................... CGCAAATACTGCTCGATGTCCTGGCGCTTGGGCATCGGT 5530 22 100.0 39 NNNNNNNNNN ...................... CGCGGCTCGGACACGGACGCCGTGCTGGAGAAGACCGGT 5591 22 100.0 39 NNNNNNNNNN ...................... CGCGAATGGGGCGGGCTCAGGGGGAGTCGGTCAGACGGT 5652 22 100.0 39 NNNNNNNNNN ...................... CGCGTGCAACATAACAACGGAAACCCGCGCCCACCCGGT 5713 22 100.0 39 NNNNNNNNNN ...................... CGCAAAGAAGGCGAGTTCAAGAGCATCGCGCCGTCCGGT 5774 22 100.0 39 NNNNNNNNNN ...................... CGCGACTACGCGCAGGGCCTGGAGGCGCTGGCCAACGGT 5835 22 100.0 39 NNNNNNNNNN ...................... CGCAGCCCCTCAAGCCTAGTCGTGCACGGACAGGGCGGT 5896 22 100.0 38 NNNNNNNNNN ...................... CGCCGCAGAACGCCAGCCACGCCCACCGCCTCACGGGT 5956 22 100.0 39 NNNNNNNNNN ...................... CGCCCGATCCAGCCGCGCGCGGCTGGGCTGAGTCCCGGT 6017 22 100.0 39 NNNNNNNNNN ...................... CGCGTTAGCCTCGCCGGACAGAATGAACGCGGCGACGGT 6078 22 100.0 39 NNNNNNNNNN ...................... CGCCACATCCCAGAGGTACTCGCCCTCTAGGCAGACGGT 6139 22 100.0 39 NNNNNNNNNN ...................... CGCGGTGTAGCTCGAGATGCCGAGGATCCCGGCCACGGT 6200 22 100.0 39 NNNNNNNNNN ...................... CGCGGTGTAGCTCGAGATGCCGAGGATCCCGGCCACGGT 6261 22 100.0 39 NNNNNNNNNN ...................... CGCGCCATCGGACTGCCCCCCACCTGCGGGGCCGCCGGT 6322 22 100.0 39 NNNNNNNNNN ...................... CGCTAGGGCGTCTTGATCCGCAGGCGCCCAATACCCGGT 6383 22 100.0 39 NNNNNNNNNN ...................... CGCCTCCCCCATGAGGACGTTGCACAGGTCAAGCACGGT 6444 22 100.0 39 NNNNNNNNNN ...................... CGCGAGTAGGTCGCGTTCCCCGCTCGTGAGCTTGGCGGT 6505 22 100.0 39 NNNNNNNNNN ...................... CGCATGGGGTGCGCGGCTGCTGAGTGGGGCTACTGCGGT 6566 22 100.0 39 NNNNNNNNNN ...................... CGCGGGTGCATCCAATGGAGCCCAGTACGCTGCCACGGT 6627 22 100.0 39 NNNNNNNNNN ...................... CGCCTGGCCGAAGTTCGCGGCAAGCTGCGAGAGTGCGGT 6688 22 100.0 39 NNNNNNNNNN ...................... CGCTGACGGCTACTAAAGGAGGAACCATTATGTCGCGGT 6749 22 100.0 39 NNNNNNNNNN ...................... CGCCATGTCGCCGGGGCGTTCCAGAGTGGGGTTGTAGGT 6810 22 100.0 39 NNNNNNNNNN ...................... CGCGCCCAGAAATCGCGCGGGGTGGTCCAGTCGTGCGGT 6871 22 100.0 39 NNNNNNNNNN ...................... CGCGCCAGCTTCAAGGCAGAGCTGAGGAAGCGCGGCGGT 6932 22 100.0 39 NNNNNNNNNN ...................... CGCTGCGGGATGACCGCACCCCATGGGGTGAATTACGGT 6993 22 100.0 39 NNNNNNNNNN ...................... CGCGTTCGGTAGCTCTGGAACTCGGGAGTAATGCACGGT 7054 22 100.0 39 NNNNNNNNNN ...................... CGCGTGGCCTGTTCGTCCTGGCGCTTGATCAGGACCGGT 7115 22 100.0 39 NNNNNNNNNN ...................... CGCGCAACGCTCGAAGAGGCCCAGGCCGCCGCAGACGGT 7176 22 100.0 39 NNNNNNNNNN ...................... CGCGAGCTGGTGCTGCTGCGCGCGCTCGTGCAGGACGGT 7237 22 100.0 39 NNNNNNNNNN ...................... CGCCTCAGCCGAGCGGGCGGGACCCATATCGGCGGCGGT 7298 22 100.0 39 NNNNNNNNNN ...................... CGCGGATGGAGGCGGAAGCGTGAGCTGGATTGATGCGGT 7359 22 100.0 39 NNNNNNNNNN ...................... CGCCACCTGCACGGCCTGGACCTGGAAGAGCTGCACGGT 7420 22 100.0 39 NNNNNNNNNN ...................... CGCCGTCGCTTCGTCCTCGTCGCCTCTCCCCCTCCCGGT 7481 22 100.0 39 NNNNNNNNNN ...................... CGCAATCTGAACGGAGGCCAGCGAGTCCTAAAAGCCGGT 7542 22 100.0 39 NNNNNNNNNN ...................... CGCTGGCGGAGCGGGCGGAGCGTCGTCGTCCAGCTCGGT 7603 22 100.0 1 NNNNNNNNNN ...................... NNNNNNNNNN ========== ====== ====== ====== ========== ====================== 53 22 38 CCATCCCCACGCCTGTGGGGAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [4,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-1.00,-1.20] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [30.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [79,73] Score: 0/0.18 # # Final direction: F [0.37,0.27 Confidence: LOW] >NC_017806 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 20338 29 100.0 32 NNNNNNNNNN ............................. GGATGACCACGGACAACTACCAGGTGATGAAC 20399 29 100.0 32 NNNNNNNNNN ............................. TTGAAAGAGGCCGAGGGACTTACTAGGGACTA 20460 29 100.0 32 NNNNNNNNNN ............................. TTTCCACGCGCGCCAGGTCGGCCCGCTGTTCT 20521 29 100.0 32 NNNNNNNNNN ............................. GCTCTTGGTGGTACATGGGATGAGGCATCTAA 20582 29 100.0 32 NNNNNNNNNN ............................. TCTATGAAGAATAAAAGAAATTAGTCCCTAGT 20643 29 100.0 32 NNNNNNNNNN ............................. CATGCCCCTAGCTTCCGGGGGCGCGTGACACC 20704 29 100.0 32 NNNNNNNNNN ............................. ATTGCTGCCGCCGAGGGCTTCCTGCCCACCAT 20765 29 100.0 32 NNNNNNNNNN ............................. GCGTCCTTGCAGGTGTTCAACCCGGTTGAGAC 20826 29 100.0 32 NNNNNNNNNN ............................. AGGGCGTCTAGCACGCCGGGTAGAGGCACCTC 20887 29 100.0 32 NNNNNNNNNN ............................. CGACGGAATGGGCGCAGGGTTTCCCCCCTCCC 20948 29 100.0 32 NNNNNNNNNN ............................. TTTTGGAATGGGTGACAGCGTTCCCGATCTCG 21009 29 100.0 32 NNNNNNNNNN ............................. GGCGGCGAGCAGCAAACCTATTTCACGAGAGG 21070 29 100.0 33 NNNNNNNNNN ............................A GGATTCCTAGTCATCCTACCGTTCCGATGTTCG 21132 29 100.0 32 NNNNNNNNNN ............................. CTAGACCATCCGCTCTGTTGGGGCCGTAAAAA 21193 29 100.0 32 NNNNNNNNNN ............................. TACAACCGGATGGTGGATTGCGGCCTGGAGGA 21254 29 100.0 32 NNNNNNNNNN ............................. TGCTTGCAGCCATTGCGACCATGACGGCAGGC 21315 29 100.0 32 NNNNNNNNNN ............................. CCGACGGTCTGGACCTTCACGGGTGCATGTGC 21376 29 100.0 32 NNNNNNNNNN ............................. AGAGATCACCCCACCCTGCGAGGTGCCCCATG 21437 29 100.0 32 NNNNNNNNNN ............................. CGCTCTTCGTTCTCGATCCGCTGGCCCTTCTC 21498 29 100.0 32 NNNNNNNNNN ............................. GTGGTGGCCTTCGTGGTGTCGTTGATGAACCA 21559 29 100.0 32 NNNNNNNNNN ............................. TACAGCTATCGCCGTGTTGACATCCTGTCGCA 21620 29 100.0 32 NNNNNNNNNN ............................. CCCCCTAGCTCCGTTTCTTAGCTCGGTTCACA 21681 29 100.0 32 NNNNNNNNNN ............................. ACCCGCGAGTACGCCACTGCCCCAGTCACCCC 21742 29 100.0 32 NNNNNNNNNN ............................. GCCTCGCGCGGCTTGCCCTTCTCGACGTCCAC 21803 29 100.0 32 NNNNNNNNNN ............................. TTGCACCGCTGGCAGGCCACCGTCAGGTTGCT 21864 29 100.0 32 NNNNNNNNNN ............................. ATGCACCCGCAGGAGCGTGCCCGCCTACAGAC 21925 29 100.0 32 NNNNNNNNNN ............................. GCGGCGCGGGCCTTGTCCTTCGCAATCCGGTT 21986 29 100.0 32 NNNNNNNNNN ............................. GCAGGGATGGCCCTGGCGGGTGGGAGCAAGGC 22047 29 100.0 32 NNNNNNNNNN ............................. ACCGACGCCGGGGGCAACTACCAGGGCGAGAC 22108 29 100.0 32 NNNNNNNNNN ............................. CGGGTCACGCTGCTGCGCCCGAGTGTGGCCAC 22169 29 100.0 32 NNNNNNNNNN ............................. TCCTTCTGGCCGATAGCGCCCTGCCTGTAGCC 22230 29 100.0 32 NNNNNNNNNN ............................. GTGAACGACTTCAGCGCGGGCAGCAGGTCATC 22291 29 100.0 32 NNNNNNNNNN ............................. CAGAGCCGCGCGACGTTCGGCGTGGCGATCCC 22352 29 100.0 32 NNNNNNNNNN ............................. GTGCCTGAGCAGGCGGTCCCCTCTGTGGCCCT 22413 29 100.0 32 NNNNNNNNNN ............................. TCCGCGAGCTGGTCGAGCAGCCCCGACCGGCC 22474 29 100.0 32 NNNNNNNNNN ............................. TCGTACTGCACGCCCCCTGTGTCCACCGCGTA 22535 29 100.0 32 NNNNNNNNNN ...........G................. GACCCGGCGGCCTTCTCGGTGTTCAGCGAGGG 22596 29 100.0 31 NNNNNNNNNN ............................. AGCGCCCCAGTGACCAGCACCTACGCCCCGG 22656 29 100.0 32 NNNNNNNNNN ............................. AAACGCCGCGTCGCGCGCATCCCGCACAGCCC 22717 29 100.0 32 NNNNNNNNNN ............................. TGGCTCGCCAGCCTGACCCCGACGGAGATCGG 22778 29 100.0 32 NNNNNNNNNN ............................. GCCAACAGCGCCGCGCTCGCGCTGGCCCGCAA 22839 29 100.0 32 NNNNNNNNNN ............................. CGGGCTGGTTCGTATGAATTGTTGTGCGCCTG 22900 29 100.0 32 NNNNNNNNNN ............................. ATGGATTGCGGGGAAGGGGTGGGCACAGAGGT 22961 29 100.0 32 NNNNNNNNNN ............................. CCGTTATCTACCGACTCGCCCAGAAACACGCG 23022 29 100.0 32 NNNNNNNNNN ............................. CAGGGGTCGTCTACGAAACGGCCCGTCGCGCC 23083 29 100.0 32 NNNNNNNNNN ............................. TACGGCATAGACGCGATGGTCATTCTCCAGCA 23144 29 100.0 32 NNNNNNNNNN ............................. GCGCTCATGGCCGCGCCCGATGAGGTCACGCT 23205 29 100.0 32 NNNNNNNNNN ............................. CAATTTGGAGCCGCCCGCCTAGAGTCGGCCCG 23266 29 100.0 32 NNNNNNNNNN ............................. GCCAGGGACCCGATCATGTGATCGGCCAGGGT 23327 29 100.0 32 NNNNNNNNNN ............................. GCCACTGAGGCTGACCTGAGCGCCGCTCAGGT 23388 29 100.0 32 NNNNNNNNNN ............................. CTGTGTGGGGTCATTCCACATCTCGATCATCT 23449 29 100.0 32 NNNNNNNNNN ............................. TTGCGGACGGCTTGCACCAACAGCTCCTGAGC 23510 29 100.0 32 NNNNNNNNNN ............................. TCCGGCCGGGAGGGTCAGCGCAGGTCGGCCGC 23571 29 100.0 32 NNNNNNNNNN ............................. CGGCAGCCCTGCGGCAACTCTGGCGGCACGTC 23632 29 100.0 32 NNNNNNNNNN ............................. GTCATGCCGCCCGCGCTCAGGGTGGCGATCCC 23693 29 100.0 32 NNNNNNNNNN ............................. GAGCCGCCACCATGACCGACACCACCACGACC 23754 29 100.0 32 NNNNNNNNNN ............................. CCTGCCGCCTGGGAGCTGCACCGCACCCTGGG 23815 29 100.0 32 NNNNNNNNNN ............................. TCCACCTCAAGAGTCAGGCGGTGGGCGTGGCT 23876 29 100.0 32 NNNNNNNNNN ............................. TCCGACCCTGGCGTGGTACGCCGCCGGATTGA 23937 29 100.0 32 NNNNNNNNNN ............................. TGCCCCCAGGCCGCACACAGCGTGCCGTGGTA 23998 29 100.0 32 NNNNNNNNNN ............................. TACGCCAGGGCGGCGTAGGCCTTGCTCTGCCA 24059 29 100.0 32 NNNNNNNNNN ............................. CCGGGCGAGATCGTCTACATTCCCGGCGTCGG 24120 29 100.0 32 NNNNNNNNNN ............................. ATGTCCGACCAGCGGCCATGCTCCACCTCGGG 24181 29 100.0 32 NNNNNNNNNN ............................. GCCGCCAGTTGCCGGGATTGATTCGTGACCTT 24242 29 100.0 32 NNNNNNNNNN ............................. GAGACTCCCGACCATGTTCAAGATTCAGTACG 24303 29 100.0 32 NNNNNNNNNN ............................. TTGTCCCGCCAGTTCACTGTCGCCACCCCGGC 24364 29 100.0 32 NNNNNNNNNN ............................. GACTGGAGCGGCACGGGGGCAACCGTGACGTA 24425 29 100.0 32 NNNNNNNNNN ............................. ATGATGTTGCGAAGGTTCTTAGTCATATGACG 24486 29 100.0 32 NNNNNNNNNN ............................. ACGGCACAATCATAGGTCAACGCTTCAAAAAA 24547 29 100.0 32 NNNNNNNNNN ............................. CTCCACGGGTGCGGGATTGTTGCGGGTAATGC 24608 29 100.0 32 NNNNNNNNNN ............................. CCTTCGCTGACCGGCGACATCGTGAGCCACTA 24669 29 100.0 32 NNNNNNNNNN ............................. TACCGGCGCGGCGCAGGCATGGGGTGTAGCAG 24730 29 100.0 32 NNNNNNNNNN ............................. GCGATGGCGAGCAGCACCATGCGCTGGTAGAT 24791 29 100.0 32 NNNNNNNNNN ............................. CGAGCTGGCCTACCGCGCCCCCAGCAGCCCGC 24852 29 100.0 32 NNNNNNNNNN ............................. GCCAGGGTGCGGTGGGCGGCCTGCGTGGCCGG 24913 29 100.0 32 NNNNNNNNNN ............................. ATTTTGACTGGGCTGCCCCAGACGCCTCAGAG 24974 29 100.0 32 NNNNNNNNNN ............................. GTATTCGTGAACGGTCAGGACTGGAGTCATTG 25035 29 100.0 32 NNNNNNNNNN ............................. GGGGGCGGGAGGGCGTGATTATTGGGTATGGC 25096 29 100.0 32 NNNNNNNNNN ............................. TTACCGCCTATTGCACCGACCCGGCCGAGTGG 25157 29 100.0 32 NNNNNNNNNN ............................. GTTAATAGAACATTTAGCGTTGCCCGGCGTTT 25218 29 100.0 32 NNNNNNNNNN ............................. TCGATGCTGTCCGCGACTTCGCGCTCCCAGAT 25279 29 100.0 32 NNNNNNNNNN ............................. ATCAAGATGCTGCCGACCTTCGTCGGGGCACT 25340 29 100.0 32 NNNNNNNNNN ............................. GCCCAACCTACAGGACTGTCAGAAATGACAGG 25401 29 100.0 32 NNNNNNNNNN ............................. TGGGCGCAAGCAAACGCGCCCCAGCAGTGAGC 25462 29 100.0 32 NNNNNNNNNN ............................. CTCATTGGGCGCGCTCTCGGTAGGGTGGCACC 25523 29 100.0 32 NNNNNNNNNN ............................. CAACGCAGCTTCCGAACGTTTAGGCCCCCGCT 25584 29 100.0 32 NNNNNNNNNN ............................. AGTACCGCACCACCACGATGTGCCACGGTTCT 25645 29 100.0 28 NNNNNNNNNN ............................. CCCGGCTAAAACCCCAGCACCCCCGCTT 25702 29 100.0 32 NNNNNNNNNN ........T.................... GGCACCGGCTGGGTCTGGGACATGACCCGTAC 25763 29 100.0 32 NNNNNNNNNN ......................C...... CCGAACTCGTCGTTGCTGCCGTGCTGTCCACC 25824 29 100.0 32 NNNNNNNNNN ............................. CCCGGCACGGTGGACCTGCTGCGCCCCTGGGG 25885 29 100.0 32 NNNNNNNNNN ........T.................... CTCAGGCCAAAGCCGCCCATCACTCGGCCTTG 25946 29 100.0 32 NNNNNNNNNN ............................. GCCTGCCCCTTGCCTGACCGCCGCGCGTACCA 26007 29 100.0 32 NNNNNNNNNN .................A.........T. GGCAACACGGCAGACGCGGCCAATGGCGGCGA 26068 29 100.0 32 NNNNNNNNNN ........T.................T.. AGCCGGCAGGTGGCCCTGAGCCTGGGCCTGGC 26129 29 100.0 1 NNNNNNNNNN ..............G.......C.A.... NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 96 29 31 GTGTTCCCCACAGGCGTGGGGATGGACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [58.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [106,314] Score: 0.18/0.18 # # Final direction: F [0.68,0.55 Confidence: LOW] >NC_017806 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 4611 29 96.6 32 ACTAATCCCC .......G..................... TCACGTAGTTTGCGGATGTTGTCAGTCTCCAC 4672 29 96.6 32 CAGTCTCCAC .......G..................... TGCATGTTCAGGTTGAGGTTCATGGGATGCTC 4733 29 100.0 32 TGGGATGCTC ............................. GACCTGGGAATCAGCCCTTTCATGGAGGAGAA 4794 29 100.0 32 TGGAGGAGAA ............................. TTCGTATCAACGGGTCACAACTCTACGCCATT 4855 29 100.0 32 CTACGCCATT ............................. CACCACGGCTGCGCCAGATCCTCGCCAGCTCT 4916 29 100.0 32 CGCCAGCTCT ............................. GGCCGGCCGCCGGGCCGCCGCGCCGCCGGAAC 4977 29 100.0 32 CCGCCGGAAC ............................. GGGCCAGTAATGAGGGCATCACCGTTCAGGCC 5038 29 100.0 32 CGTTCAGGCC ............................. CAGCCGACCAAAGTCGCCCCGTCCGAGTTTGC 5099 29 96.6 32 CCGAGTTTGC ...........................A. AGGTGAACGCCGTGTCAGAGGAACAGGGCGGG 5160 29 100.0 32 ACAGGGCGGG ............................. CAGATAGGGCTGATCCCCCTGGAGCAGGGCGT 5221 29 100.0 32 AGCAGGGCGT ............................. GGCGAGCGCGTCCGGCGTGAGGTAGACCGTCA 5282 29 100.0 32 TAGACCGTCA ............................. AGCAGGGGGTCGGTGAACGTCTCGATGATGTA 5343 29 100.0 32 CGATGATGTA ............................. AGGGCCTGGAAGACGCCGAACTGAAGACCGCG 5404 29 100.0 32 GAAGACCGCG ............................. TCATGCCCAAAGTGGCCCAGGCGAAAGCCAAA 5465 29 100.0 32 GAAAGCCAAA ............................. AAATACTGCTCGATGTCCTGGCGCTTGGGCAT 5526 29 100.0 32 GCTTGGGCAT ............................. GGCTCGGACACGGACGCCGTGCTGGAGAAGAC 5587 29 100.0 32 TGGAGAAGAC ............................. GAATGGGGCGGGCTCAGGGGGAGTCGGTCAGA 5648 29 100.0 32 GTCGGTCAGA ............................. GTGCAACATAACAACGGAAACCCGCGCCCACC 5709 29 100.0 32 CGCGCCCACC ............................. AAAGAAGGCGAGTTCAAGAGCATCGCGCCGTC 5770 29 100.0 32 TCGCGCCGTC ............................. GACTACGCGCAGGGCCTGGAGGCGCTGGCCAA 5831 29 100.0 32 CGCTGGCCAA ............................. AGCCCCTCAAGCCTAGTCGTGCACGGACAGGG 5892 29 100.0 31 ACGGACAGGG ............................. CGCAGAACGCCAGCCACGCCCACCGCCTCAC 5952 29 96.6 32 ACCGCCTCAC G............................ CCGATCCAGCCGCGCGCGGCTGGGCTGAGTCC 6013 29 100.0 32 GGCTGAGTCC ............................. GTTAGCCTCGCCGGACAGAATGAACGCGGCGA 6074 29 100.0 32 AACGCGGCGA ............................. CACATCCCAGAGGTACTCGCCCTCTAGGCAGA 6135 29 100.0 32 TCTAGGCAGA ............................. GGTGTAGCTCGAGATGCCGAGGATCCCGGCCA 6196 29 100.0 32 ATCCCGGCCA ............................. GGTGTAGCTCGAGATGCCGAGGATCCCGGCCA 6257 29 100.0 32 ATCCCGGCCA ............................. GCCATCGGACTGCCCCCCACCTGCGGGGCCGC 6318 29 100.0 32 GCGGGGCCGC ............................. TAGGGCGTCTTGATCCGCAGGCGCCCAATACC 6379 29 100.0 32 GCCCAATACC ............................. CTCCCCCATGAGGACGTTGCACAGGTCAAGCA 6440 29 100.0 32 AGGTCAAGCA ............................. GAGTAGGTCGCGTTCCCCGCTCGTGAGCTTGG 6501 29 100.0 32 GTGAGCTTGG ............................. ATGGGGTGCGCGGCTGCTGAGTGGGGCTACTG 6562 29 100.0 32 GGGGCTACTG ............................. GGGTGCATCCAATGGAGCCCAGTACGCTGCCA 6623 29 100.0 32 TACGCTGCCA ............................. CTGGCCGAAGTTCGCGGCAAGCTGCGAGAGTG 6684 29 100.0 32 TGCGAGAGTG ............................. TGACGGCTACTAAAGGAGGAACCATTATGTCG 6745 29 100.0 32 CATTATGTCG ............................. CATGTCGCCGGGGCGTTCCAGAGTGGGGTTGT 6806 29 96.6 32 GTGGGGTTGT A............................ GCCCAGAAATCGCGCGGGGTGGTCCAGTCGTG 6867 29 100.0 32 TCCAGTCGTG ............................. GCCAGCTTCAAGGCAGAGCTGAGGAAGCGCGG 6928 29 100.0 32 GGAAGCGCGG ............................. TGCGGGATGACCGCACCCCATGGGGTGAATTA 6989 29 100.0 32 GGGTGAATTA ............................. GTTCGGTAGCTCTGGAACTCGGGAGTAATGCA 7050 29 100.0 32 GAGTAATGCA ............................. GTGGCCTGTTCGTCCTGGCGCTTGATCAGGAC 7111 29 100.0 32 TGATCAGGAC ............................. GCAACGCTCGAAGAGGCCCAGGCCGCCGCAGA 7172 29 100.0 32 CCGCCGCAGA ............................. GAGCTGGTGCTGCTGCGCGCGCTCGTGCAGGA 7233 29 100.0 32 TCGTGCAGGA ............................. CTCAGCCGAGCGGGCGGGACCCATATCGGCGG 7294 29 100.0 32 ATATCGGCGG ............................. GGATGGAGGCGGAAGCGTGAGCTGGATTGATG 7355 29 100.0 32 TGGATTGATG ............................. CACCTGCACGGCCTGGACCTGGAAGAGCTGCA 7416 29 100.0 32 AAGAGCTGCA ............................. CGTCGCTTCGTCCTCGTCGCCTCTCCCCCTCC 7477 29 100.0 32 CTCCCCCTCC ............................. AATCTGAACGGAGGCCAGCGAGTCCTAAAAGC 7538 29 100.0 32 TCCTAAAAGC ............................. TGGCGGAGCGGGCGGAGCGTCGTCGTCCAGCT 7599 29 100.0 TCGTCCAGCT ............................. ACTTCAGAAC ========== ====== ====== ====== ========== ============================= 50 29 31 CGGTCCATCCCCACGCCTGTGGGGAACGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [4,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [36.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [258,70] Score: 0.18/0.18 # # Final direction: R [0.18,0.68 Confidence: MEDIUM] >NC_017845 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 4068747 28 100.0 32 AACTCTTACG ............................ AGCCTTATTCAGTTTCTCTGTCAGTTCTGCAA 4068807 28 100.0 32 AGTTCTGCAA ............................ GTCGGCGTAGATGTTGATGACGGGTGATGCGG 4068867 28 100.0 32 GGTGATGCGG ............................ AGCAATCCGAGCAATTGGAGGCAAACCATCAG 4068927 28 100.0 32 AAACCATCAG ............................ TGCCAGTTCAGATGTTGGCATCGCACCAATTG 4068987 28 100.0 32 GCACCAATTG ............................ GTTCTCCGCTGGCTGCGAGCGCTCAACGTACC 4069047 28 100.0 32 TCAACGTACC ............................ GCTCGGATCGTAGCCTATCCATACAGGGCGAT 4069107 28 100.0 32 ACAGGGCGAT ............................ AACTACCGAGGCTCTAGGCGACTAAGCTAATT 4069167 28 100.0 32 TAAGCTAATT ............................ GTTGCGCTCGGCCGCTTGCTTCATCATCTGCC 4069227 28 100.0 32 ATCATCTGCC ............................ TGAATATTCTCATTGCGCTCAGGCTTTGGCGT 4069287 28 100.0 32 GCTTTGGCGT ............................ TGCGAGGCACTGGCATCACCAGTCTGCCGGAT 4069347 28 96.4 32 TCTGCCGGAT .................T.......... TGCTCACGGCTTAGTTCCTGAGTGGAGCCTGC 4069407 28 96.4 32 TGGAGCCTGC .................T.......... AATGGAATATTGCCATTTTTTTGATCAGGAAC 4069467 28 100.0 32 GATCAGGAAC ............................ GCAATGCGTGGGGCGGCATGGTATTGAAAGAA 4069527 28 100.0 ATTGAAAGAA ............................ GGGCGCGCTG ========== ====== ====== ====== ========== ============================ 14 28 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.57%AT] # Reference repeat match suggestion: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 92% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [66.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [188,164] Score: 0/0.18 # # Final direction: F [1.14,0 Confidence: HIGH] >NC_017845 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 4087266 28 100.0 32 NNNNNNNNNN ............................ TGAGAGGCCCTCATCAAATGAGAGCGAAAAAC 4087326 28 100.0 32 NNNNNNNNNN ............................ CGATACACGAAAACCCAACGGTGATGATGGCC 4087386 28 100.0 32 NNNNNNNNNN ............................ CACTTAACGCAGTCGCTATCGCAGCAACCGGC 4087446 28 100.0 32 NNNNNNNNNN ............................ GTTATGCATACTGACTGAGCAGGCGAGGATTG 4087506 28 100.0 32 NNNNNNNNNN ............................ TAATGCCTGTTGATAATATTGATCGTATATTT 4087566 28 100.0 33 NNNNNNNNNN ............................ GCCCACGTCACCATTGTCCTGCTGCTGTTGCAA 4087627 28 100.0 32 NNNNNNNNNN ............................ AGATTCAGCGTGTACTGATTCTCAAACGACAG 4087687 28 100.0 32 NNNNNNNNNN ............................ AGCTCCGGTTAAATTGGACTGTCTCCTTTTCT 4087747 28 100.0 32 NNNNNNNNNN ............................ CTGATGGAGTCTGATAGTGATTTTCGCCTGCG 4087807 28 100.0 32 NNNNNNNNNN ............................ GCCACCGCGCCACTCGTCACCGTGAGGGCGTC 4087867 28 100.0 32 NNNNNNNNNN ............................ GGTCAGGAACCGCGTGTCATGAATGAACGTAG 4087927 28 100.0 32 NNNNNNNNNN ............................ TCTTTTTCGTCGCTGAACGGCCGGTGCAGTCT 4087987 28 100.0 32 NNNNNNNNNN ............................ AACCCGGCTGAAACATGCCTTGCGCATTCTTG 4088047 28 100.0 32 NNNNNNNNNN ............................ TGCTCGTTCCATTTCACCCATGTGAACAGGAA 4088107 28 100.0 32 NNNNNNNNNN ............................ ATTTCCCAATGCCCGCCGAAGTCCGATTGCCG 4088167 28 100.0 32 NNNNNNNNNN ............................ TTCACGCATTCATCCTGATGCTGCTTACTGGC 4088227 28 100.0 32 NNNNNNNNNN ............................ ATCGCCTGACTGTAGTGCGTTTTCTCACTCGC 4088287 28 100.0 32 NNNNNNNNNN ............................ GCTATGGCATCAGCGGCATTTCAGCAGGCCAA 4088347 28 100.0 32 NNNNNNNNNN ............................ ATCCTGCGGCGGCTTCACTTCGCCTGGGAACG 4088407 28 100.0 32 NNNNNNNNNN .............C.............. TGCCTGCCGACAGCTACGCTGACGAGCCGCAA 4088467 28 100.0 32 NNNNNNNNNN .............C.............. TCCTGCTGGTGGACGAACGCGCCCGGAACCAG 4088527 28 100.0 32 NNNNNNNNNN .............C.............. AGTTACTCGATACAGTTTCTCCGACCCAATGG 4088587 28 100.0 32 NNNNNNNNNN ............................ TGATTATCAATTTGCCGAGCGGAACGGCGCAG 4088647 28 100.0 32 NNNNNNNNNN ............................ GCAATGACAGCAGTTGTCGCGCAGCCGGTGCG 4088707 28 100.0 32 NNNNNNNNNN ............................ AATCTCAAACGGCGTCAGCCCGTTGTACAACG 4088767 28 100.0 32 NNNNNNNNNN ............................ AGCAGATACGGACTTACGCAACTGGTCGATAA 4088827 28 100.0 32 NNNNNNNNNN ............................ GCCAGGCGAGGGAGCTGCACCGGACAGCGGGT 4088887 28 100.0 32 NNNNNNNNNN .............C.............. ACCTGATAGAAGTTCATGCTTGTGGAAAGAAT 4088947 28 100.0 32 NNNNNNNNNN .............C.............. TCTAGCCAGTTATGAATTTCAACCGACTTTGA 4089007 28 100.0 32 NNNNNNNNNN .............C.............. ACTGTTATTTCATACGGCACATCAGGTGGCAG 4089067 28 100.0 32 NNNNNNNNNN .............C.............. AGATCACAGTGAACAGGAAAACGATATTCAGC 4089127 28 100.0 1 NNNNNNNNNN ............GC......T.C..TGT NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 32 28 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.57%AT] # Reference repeat match suggestion: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 92% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [60.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [297,42] Score: 0.18/0.18 # # Final direction: F [1.73,0 Confidence: HIGH] >NC_017831 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 4052411 19 100.0 45 NNNNNNNNNN AGA..T..T....G..... GACGACGTCTACTTTGATGGTTGCCATATCGACTCCTGTCGATCG 4052475 19 100.0 28 NNNNNNNNNN ................... TACTCCGATCCCATGCCGTGGTTGGCCA 4052522 19 100.0 27 NNNNNNNNNN ................... TTACTCTGGCCCCGCGGCGGTCGATCG 4052568 19 100.0 28 NNNNNNNNNN ................... CACTCCGATCCCATGCCGTGATCGGCCG 4052615 19 100.0 1 NNNNNNNNNN .....C......G...A.G NNNNNNNNNN ========== ====== ====== ====== ========== =================== 5 19 32 GAGTCAGCGCTTCAGCGCT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [6-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [30.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [614,160] Score: 0.18/0.18 # # Final direction: R [0.18,1.05 Confidence: HIGH] >NC_017834 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1656537 29 100.0 33 NNNNNNNNNN .....T......T.T...A.......... CGTGTTTGAGTGTGCGATTGCACCCTCCGATTA 1656599 29 100.0 31 NNNNNNNNNN ............................. GTATGAAGGCGGTGGCCACGTCGAAGACGCC 1656659 29 100.0 32 NNNNNNNNNN ............................. AGCGACGACCCACAGCCGACGGCCGTCCCCAA 1656720 29 100.0 32 NNNNNNNNNN ............................. CGGCTCGCACATCACATGCGGCCGCGAAAACC 1656781 29 100.0 32 NNNNNNNNNN T............................ CTTTCGATGAGCGTGCCTTGGGCTGCTGTTGG 1656842 29 100.0 32 NNNNNNNNNN ............................. TACGGCGATGTCGCGCTCAAGGACCTGCCCGC 1656903 29 100.0 32 NNNNNNNNNN ............................. TACGGCGATGTCGCGCTCAAGGACCTGCCCGC 1656964 29 100.0 32 NNNNNNNNNN ............................. CGATCGGTTTGAGTGCTGTTGGACGCTCGGTT 1657025 29 100.0 32 NNNNNNNNNN ............................. TTGGACGGCACCGTTCGCGCTGGTCGCCCACC 1657086 29 100.0 32 NNNNNNNNNN ............................. GGTTTGCCGTCCGCGGTGAGCATGCCGGACGC 1657147 29 100.0 32 NNNNNNNNNN ............................. TTGACTCAGGTGCAGGCGTTGCGTGATGCCGA 1657208 29 100.0 32 NNNNNNNNNN ............................. CAACTCAACTACACGCCGGCAACCGAGCGTGC 1657269 29 100.0 32 NNNNNNNNNN ............................. GACTTCCCGCCCCTCGCTGCCTTACGCTTGTC 1657330 29 100.0 32 NNNNNNNNNN ............................. TTGGAGAACGATAAAAACGGCGTCATGGATTA 1657391 29 100.0 32 NNNNNNNNNN ............................. GAGAGCATGGCGGACGCGATGGACGGCATGAG 1657452 29 100.0 32 NNNNNNNNNN ............................. ATTCCAGCGGCCACGCAAGGTAATATGCGTGA 1657513 29 100.0 32 NNNNNNNNNN ............................. GTGACAGTGCGCGCATTCGTGTCTGACGCTGC 1657574 29 100.0 33 NNNNNNNNNN ............................. CATGTATCGCATACCTGAGTACCCCACGCTCAA 1657636 29 100.0 32 NNNNNNNNNN ............................. TATCCGTTGGCTGAGTTGATGAAACACTCGGT 1657697 29 100.0 32 NNNNNNNNNN ............................. GCACGCGCTTGCACGTCCAGCCAATTCTCGCT 1657758 29 100.0 32 NNNNNNNNNN ............................. CTCTTCGCGCCCTCTAGCTCGTAGCGAATACC 1657819 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 22 29 32 CGGATCATCCCCGCCTGTGCGGGGCAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-11.90,-12.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [736,753] Score: 0/0.18 # # Final direction: R [0.64,0.78 Confidence: LOW] >NC_017834 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1657925 29 100.0 32 TCGCCCCGGC ............................. CTCTTCTATTCGAGTTCCCATTACGGGTATTA 1657986 29 100.0 32 ACGGGTATTA ............................. CAACGTTTTCTTGACCCGACTTGCGCTCTCAC 1658047 29 100.0 33 GCGCTCTCAC ............................. CTGTAGCGGCTAATACCGCGCTAGCGCCGGAAC 1658109 29 100.0 32 GCGCCGGAAC ............................. CTGCGCAGACCTCGTGCGCTCGACCCATATCT 1658170 29 100.0 32 ACCCATATCT ............................. CGCCACCACAAGGGCGACGCATGGATACTGAA 1658231 29 100.0 32 GGATACTGAA ............................. CGACGCAGACCATCGAAGGCGCTATGGGCAAC 1658292 29 100.0 32 TATGGGCAAC ............................. CAATCGACGACCCTGACTGTCCTCCCGCAGCG 1658353 29 100.0 32 TCCCGCAGCG ............................. GCAGCGGCGTAGGCAAGGGACTCGGCCTTGCA 1658414 29 100.0 32 CGGCCTTGCA ............................. AATTCGTGTATGACGGGTCGCCGTGGATACAG 1658475 29 100.0 GTGGATACAG ............................. AGTCCGACTT ========== ====== ====== ====== ========== ============================= 10 29 32 CGGATCATCCCCGCCTGTGCGGGGCAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-11.90,-12.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [33.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2124,97] Score: 0.18/0.18 # # Final direction: R [0.55,0.64 Confidence: LOW] >NC_017846 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 191821 32 100.0 34 TGACTTCTAT ................................ ACGCTCAAAACGACGAGATTCCACTGCGTCTTCG 191887 32 100.0 34 TGCGTCTTCG ................................ ATAGTTAAAAAAATCATCCGCATGGATTAGTGTG 191953 32 100.0 33 GATTAGTGTG ................................ AGTTTTTACAGGTCTTGGTGATTGAGCATAGAT 192018 32 100.0 35 GAGCATAGAT ................................ CATTAAAACTGATTGTGGATAATAGCCCACAGTAT 192085 32 100.0 CCCACAGTAT ................................ TCCCTATATA ========== ====== ====== ====== ========== ================================ 5 32 34 ATTTCAACACACAGCCACCCGAAGGTGGCTGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [9,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.80,-4.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [343,193] Score: 0/0.18 # # Final direction: R [0.37,0.64 Confidence: LOW] >NC_017846 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 2006059 32 100.0 35 CAGATAGGGA ................................ AAATACATGATTTTGATTTAATTGTAAACCTTGTG 2006126 32 100.0 33 AAACCTTGTG ................................ AACTTTTTTAGATAATACATATACAAAAAATTT 2006191 32 100.0 33 CAAAAAATTT ................................ AGATACATTAATTATTATTAATCGATATAATTT 2006256 32 100.0 35 GATATAATTT ................................ ATCGTGAAAATTACGCGCTTGTTTATATATTCGAC 2006323 32 100.0 36 TATATTCGAC ................................ TATCAAGGCAATGGGGTTGTTGACAGCAGCTACTAA 2006391 32 100.0 34 CAGCTACTAA ................................ CTTATGTAGGTTATATATTAGCACCTGTTGCTGC 2006457 32 100.0 CTGTTGCTGC ................................ ACTACCGGCA ========== ====== ====== ====== ========== ================================ 7 32 34 GCAGCCACCTTCGGGTGGCTGTGTGTTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.90,-3.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [66.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [672,403] Score: 0/0.18 # # Final direction: F [0.64,0.37 Confidence: LOW] >NC_017856 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1061662 28 100.0 32 NNNNNNNNNN CCCT..........A............. TAACGGGCAACGTATCGACCTGATATGCTGAT 1061722 28 100.0 32 NNNNNNNNNN ............................ AGCATTTCTTTTTCTTGCTGTAGCTGCTTAAT 1061782 28 100.0 32 NNNNNNNNNN ............................ GTTTCAAGAATGACAAACTTTGGTCGCCGGAA 1061842 28 100.0 32 NNNNNNNNNN ............................ CAATATTGATCGGCCAATGATCGCCCTTCGTA 1061902 28 100.0 32 NNNNNNNNNN ............................ TGATACAGACTGGCTTTTTTCCGAGGGTCGCT 1061962 28 100.0 32 NNNNNNNNNN ............................ AACACAGTGTTCAGGGATGTGGTTGATCGCTA 1062022 28 100.0 32 NNNNNNNNNN ............................ ACCCCATCAGGTGGAACCTGACAGGGCTAAAT 1062082 28 100.0 32 NNNNNNNNNN ............................ CATACTGCGAGACATTAAAAACACGGTGTTCA 1062142 28 100.0 32 NNNNNNNNNN ............................ CGAGAGGGGCTTTCGCTCCTCTCTTTTTTTCA 1062202 28 100.0 32 NNNNNNNNNN ............................ CGAAGCCAAGCTGTTCAAGATGGTGACGTGTT 1062262 28 100.0 32 NNNNNNNNNN ............................ AATCTGGCGTTTTTCACAGCGATGGCCAGTGT 1062322 28 100.0 32 NNNNNNNNNN ............................ TGCAAAGATTAACATCATTCATGTTTAACATT 1062382 28 100.0 32 NNNNNNNNNN ............................ GTTGCCCTGATGGGCCTTTACCGCATTCGGCT 1062442 28 100.0 32 NNNNNNNNNN ............................ TAGTTCACCTTTCTCTGATGCCGCTGGATGCA 1062502 28 100.0 32 NNNNNNNNNN ............................ TTTCCTCTGAAAAATACCATTTACCTTTTTCT 1062562 28 100.0 32 NNNNNNNNNN ............................ TTCGTGCATTGCCAGGGTTTGAGGAAGACTTA 1062622 28 100.0 32 NNNNNNNNNN ............................ CCGCGTTCCTCGGTGTTCATTAACCCATCACC 1062682 28 100.0 32 NNNNNNNNNN ............................ CAGAGATTGGGTCAGTGCAAATCGATTCAGGG 1062742 28 100.0 32 NNNNNNNNNN ............................ CGGTCAGTCAGCCGAGAAATCAGCGTCCTTAT 1062802 28 100.0 32 NNNNNNNNNN ............................ AGGGGATTGATTTTCGCGTTCGTGTGCTTGGT 1062862 28 100.0 32 NNNNNNNNNN ............................ AGGGGATTGATTTTCGCGTTCGTGTGCTTGGT 1062922 28 100.0 32 NNNNNNNNNN ............................ GGGTTTGTTATTCATCATCAAAGCGTGATGGC 1062982 28 100.0 32 NNNNNNNNNN ............................ ATGAGCAAGGGTAGCGGCAGAAGGCCGCAGCA 1063042 28 100.0 32 NNNNNNNNNN ............................ ACAGCCAATTATCGACATAACAGGCAGATGAT 1063102 28 100.0 32 NNNNNNNNNN ............................ AACGGCCTTGGTGCCAGTGGACTGAGATGTAA 1063162 28 100.0 32 NNNNNNNNNN ............................ ACAGCCAATTATCGACATAACAGGCAGATGAT 1063222 28 100.0 32 NNNNNNNNNN ............................ AACGGCCTTGGTGCCAGTGGACTGAGATGTAA 1063282 28 100.0 32 NNNNNNNNNN ............................ GGGCTGCGGTCTTTGGCGTTGTCATCTTGACT 1063342 28 100.0 32 NNNNNNNNNN ............................ TTCCTTGCCGTTCAGATCCATGTCGCTGCAGC 1063402 28 100.0 32 NNNNNNNNNN ............................ GGAGTAACAGCAAAGAAACTCACGGGGGGGTA 1063462 28 100.0 32 NNNNNNNNNN ............................ TGCAAATCCTGAAAACCATCGCCGACGATTGT 1063522 28 100.0 32 NNNNNNNNNN ............................ CATTGATTATCACAGCATAAGGACAATTTCAT 1063582 28 100.0 32 NNNNNNNNNN ............................ CGTTTAGTGTTCGGATGGATAACTGACTGACT 1063642 28 100.0 32 NNNNNNNNNN ............................ TGCTGATGCTCGCGCTGGGCAGTGGGCTGATA 1063702 28 100.0 32 NNNNNNNNNN ............................ ACCGGCGGGGTGATTGCTGCCGGGTCTTATGA 1063762 28 100.0 32 NNNNNNNNNN ............................ CGTTACGGTTCAGTCCGGTTCACCCGTATCAC 1063822 28 100.0 32 NNNNNNNNNN ............................ GTACCGGACGCCAAGGAAGTCGAGGTCGATAA 1063882 28 100.0 32 NNNNNNNNNN ............................ CTTAAAGGCTCTTACAACGAAGGATTTCACAA 1063942 28 100.0 32 NNNNNNNNNN ............................ GGCAGAATCCCGACAACATGCAGACGCGACCA 1064002 28 100.0 32 NNNNNNNNNN ............................ TGGCGTGCCAGCTCAGCTGAGGTGCTGCGACA 1064062 28 100.0 32 NNNNNNNNNN ............................ CCAGTAACAGCGCAGTATGGTTGCAAATAGAC 1064122 28 100.0 32 NNNNNNNNNN ............................ GTCCTTCAGACAAAATTCGCGCTCGGCTTTGC 1064182 28 100.0 32 NNNNNNNNNN ............................ ACAAGGTATTCCTGAGTTAATTAACGGTGTAT 1064242 28 100.0 32 NNNNNNNNNN ............................ ACTAAACAGCAGCTTGACCAATTATTTATACT 1064302 28 100.0 32 NNNNNNNNNN ............................ GACGCGATTGAGGATGACACGGAACGGTTACT 1064362 28 100.0 32 NNNNNNNNNN ............................ GTTGTCATGGATAGTTTTTATGTTGGCAGTTT 1064422 28 100.0 32 NNNNNNNNNN ............................ GAGTGTTTTCATTGCTGCCCCTCTGGTTTGTT 1064482 28 100.0 32 NNNNNNNNNN ............................ TCTCTCTGAGGATGATATTGAGATACTGATTA 1064542 28 100.0 32 NNNNNNNNNN ............................ GCTAATGGAACCCATCAATAAGTTTCTTCAAT 1064602 28 100.0 32 NNNNNNNNNN ............................ TTATCAATAGTCGTTCCGGAGCTAGCGGATTA 1064662 28 100.0 32 NNNNNNNNNN ............................ GTCACCCGCGCGCAAGAAGGCACCACTGCGCT 1064722 28 100.0 32 NNNNNNNNNN ............................ GCTAAAGCACGGCCAGCAGAAAACGCTGCGCT 1064782 28 100.0 32 NNNNNNNNNN ............................ ATCATATGAAGTTGAAACCCGGACACGAAGCA 1064842 28 100.0 32 NNNNNNNNNN ............................ GACTGGCTTGATTCGTTTCTTTTCGACGCTGA 1064902 28 100.0 32 NNNNNNNNNN ............................ CTCCACGTTTAATTGCCCCGTCAGCGGCTTAA 1064962 28 100.0 32 NNNNNNNNNN ............................ GCGATGGCCTCAGCCGCCGGGCGAATTTGGTT 1065022 28 100.0 32 NNNNNNNNNN ............................ TGATGTTAAACCCGAAACAGTAAAAAAATGGT 1065082 28 100.0 33 NNNNNNNNNN ............................ AAAGTTAAGCTTCACGTTTCTGGTCACATTGAA 1065143 28 100.0 32 NNNNNNNNNN ............................ CTGTTGTCAGATGGCAGTGGTATACAAGATCA 1065203 28 100.0 32 NNNNNNNNNN ............................ CAGCCTGTCTCTGGGGGCGCGGCGATGGACTG 1065263 28 100.0 32 NNNNNNNNNN ............................ TGTTTTTCGAACTCAATGATTTGTTGTGACAT 1065323 28 100.0 32 NNNNNNNNNN ............................ TATATTATGTTAAATAATAATTGTGAACATGA 1065383 28 100.0 32 NNNNNNNNNN ............................ TTGTTGTGCGTAATTGCCGACGCCACCAGAGT 1065443 28 100.0 32 NNNNNNNNNN ............................ TTTCAGCAACGCGGAGCGGTTCACTTTCACAT 1065503 28 100.0 32 NNNNNNNNNN ............................ ATATTGGCAGAGGGTTTGTTGATAGGCTGATT 1065563 28 100.0 32 NNNNNNNNNN ............................ TACGCCCGGCTCGTTGAACTGGCCGTTGTCGA 1065623 28 100.0 32 NNNNNNNNNN ............................ GTCTGGATAGTCTGAGCATAAATCTTGTTGTG 1065683 28 100.0 32 NNNNNNNNNN ............................ CTGACCTGTGAGAGAAAGAAGTTCAGCGTATT 1065743 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 69 28 32 TTTCTAAGCTGCCTGTGCGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [402,377] Score: 0/0.18 # # Final direction: R [0,1.42 Confidence: HIGH] >NC_017846 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 274761 28 100.0 32 NNNNNNNNNN ............................ AAATAACAGCAAGTTCATTTTTAATTCCTCTA 274821 28 100.0 32 NNNNNNNNNN ............................ AACTTTTGCCGTAATTTGCTCTAATATAGTTA 274881 28 100.0 32 NNNNNNNNNN ............................ TTCTATGTGTATTTTATGCAGTTTAATTAGCT 274941 28 100.0 32 NNNNNNNNNN ............................ TTGAATTGTTAAATTTCTGTTAAAAATGCAAA 275001 28 100.0 32 NNNNNNNNNN ............................ ACAACAGCAGCGGGTACCTGAAAAATTTTTGA 275061 28 100.0 33 NNNNNNNNNN ............................ AGAATCACTTTTAGCTTGTAACAAACTACCAGT 275122 28 100.0 32 NNNNNNNNNN ............................ ATCAGGTAAATCTTCAAATTCAACTGTTTGTG 275182 28 100.0 32 NNNNNNNNNN ............................ TGATTTATTAACGGTTATCAATGAGTTTTCTT 275242 28 100.0 32 NNNNNNNNNN ............................ GGCGCTCGCTTAGATGTTGATCTTGTGACAAC 275302 28 100.0 32 NNNNNNNNNN ............................ TTTTTTTGTTAAAAAATATCATTAAAGTTACT 275362 28 100.0 32 NNNNNNNNNN ............................ TCCGGGATAAGCGCCCCGCGGGCGTCTTCGCG 275422 28 100.0 32 NNNNNNNNNN ............................ ATAATTGTCGATACCCTTCATCTAATGAACTA 275482 28 100.0 32 NNNNNNNNNN ............................ ATTACCTGTTTCAACAATTAATTTAGCCATTT 275542 28 100.0 32 NNNNNNNNNN ............................ ATGAAATAAGTCGACAAATTTTTCACCATTTG 275602 28 100.0 32 NNNNNNNNNN ............................ TAAAGCAGATGTACGAAAGATTCGTTTTATTT 275662 28 100.0 32 NNNNNNNNNN ............................ AGTATACAACCCGTTTTGATCTAATTCCCTTG 275722 28 100.0 32 NNNNNNNNNN ............................ ACAAGCTTTATATTTGCATTTGCAAACTATTG 275782 28 100.0 32 NNNNNNNNNN ............................ TGTATACAGCCCTTTTTGATCTAATTCCTTTG 275842 28 100.0 32 NNNNNNNNNN ............................ ATCTTTGTCTAAAAGGATTTATGATACACTGT 275902 28 100.0 32 NNNNNNNNNN ............................ TGATTATGATGGATTGATTTCGCGAACAATTC 275962 28 100.0 32 NNNNNNNNNN ............................ AAAAAAATTAGAGTGGGATTCCTCACGAGGTA 276022 28 100.0 32 NNNNNNNNNN ............................ TGTGCTATATTTTCAGCCTGTGAAGTGCGGTC 276082 28 100.0 32 NNNNNNNNNN ............................ ATTATGGGTAAAACCGCAAAATTCCTCGATGC 276142 28 100.0 33 NNNNNNNNNN ............................ AAGGACATAATGCGATCTCTTTGCCAGTTGGAT 276203 28 100.0 32 NNNNNNNNNN ............................ AATCAAAAATCGCCGCCTTGCCTGATGTTAAA 276263 28 100.0 32 NNNNNNNNNN ............................ ATTTTGTAAAGCGCTCAATAATGCGAGAAATC 276323 28 100.0 32 NNNNNNNNNN ............................ TTCATCGCCAGCCTGTAGTGGGAACGTCACTG 276383 28 100.0 32 NNNNNNNNNN ............................ TATTGAACATGAAATTAAAATATGTATTGTCC 276443 28 100.0 32 NNNNNNNNNN ............................ CTTTTGAGCACCTTTACTCATTGGCCTTTATT 276503 28 100.0 32 NNNNNNNNNN ............................ TACTCAAGCACCGGTTCAACAAGCAGTAGGTA 276563 28 100.0 32 NNNNNNNNNN ............................ AATTGCAAATCAAAACATTCTCTTGTAGCTTT 276623 28 100.0 33 NNNNNNNNNN ............................ CTGAAACAAGTTCTCCCAAGCCAACAAAACTAT 276684 28 100.0 32 NNNNNNNNNN ............................ TTAGTGACACTTGCTTGTTTTCTTGGATTTAA 276744 28 100.0 32 NNNNNNNNNN ............................ TCAAAAATTTTTCAGGTACCCGCTGCGATTGT 276804 28 100.0 32 NNNNNNNNNN ............................ TGTGGATAACTTTTCAACGTCTTCGATCGAGA 276864 28 100.0 32 NNNNNNNNNN ............................ AATGGCACAATTATATCCTGACAGAGTTAGTG 276924 28 100.0 32 NNNNNNNNNN ............................ TGCCGCAATTGTGGGCATACATTATCGCAAAC 276984 28 100.0 32 NNNNNNNNNN ............................ GTCATCAGGCCAAGTCAAAGTAGGGCGTTAAG 277044 28 100.0 32 NNNNNNNNNN ............................ TGATATGGGTTTCATTATTAACACAATTTTAT 277104 28 100.0 33 NNNNNNNNNN .......A.................... CTAATAGCTTCATAGTTGTCGTTTTTTTAATGT 277165 28 100.0 32 NNNNNNNNNN ............................ TCTGATAAGTTTCTGTCGATTCTCGCCAATGT 277225 28 100.0 32 NNNNNNNNNN ............................ AATATCAAAAAATCGGCAATTTTGAAATCCGC 277285 28 100.0 32 NNNNNNNNNN ............................ GCAGTACGCAGCCTTATTTTTTCTTCCTTGAA 277345 28 100.0 32 NNNNNNNNNN ............................ ATCTTGCGCCTGCGAAACCGCCACAGATTGGA 277405 28 100.0 32 NNNNNNNNNN ............................ TAGAGTTCTTGTATTGGAATCAATAAGCTGCT 277465 28 100.0 32 NNNNNNNNNN ............................ TGCTGCAATTGTGGGCATACATTATCGCAAAC 277525 28 100.0 32 NNNNNNNNNN ............................ TGTTGAAATACCTTTTGATGGTGCGATTAAAC 277585 28 100.0 32 NNNNNNNNNN ............................ AACAAAACCCGCTATAGAATATGATGTAGCGA 277645 28 100.0 32 NNNNNNNNNN ............................ TACTCAAGCACCGGTTCAACAGAATTTTGTTC 277705 28 100.0 32 NNNNNNNNNN ............................ TACTAATTCCAGACGTTCAATCAGCATTAATA 277765 28 100.0 32 NNNNNNNNNN ............................ ATGTAAATCAATATGAAATGTTCAAAGCTATT 277825 28 100.0 31 NNNNNNNNNN ............................ TATACAACAAATCAGGTAAAGGTAACATTTA 277884 28 100.0 32 NNNNNNNNNN ............................ ATGTAAATCAATATGAAATGTTCAAAGCTATT 277944 28 100.0 32 NNNNNNNNNN ............................ TATACAACAAATCAGGTAAAGGTAACATTCTA 278004 28 100.0 32 NNNNNNNNNN ............................ TTATGAAGAAGCAATGACAGCTGTAATTATTT 278064 28 100.0 32 NNNNNNNNNN ............................ TGTGGATAACTTTTCAACATCTTCGATCGAGA 278124 28 100.0 32 NNNNNNNNNN ............................ AACCATTGATGACGGCGATCAGATGTTGGTTG 278184 28 100.0 32 NNNNNNNNNN ............................ ATCGGTCATATTGATTTAGTAAAAGATATGCC 278244 28 100.0 32 NNNNNNNNNN ............................ CGCTGCAATTGTGGGCATACATTATCGCAAAC 278304 28 100.0 32 NNNNNNNNNN ............................ AAATTACAGCTAATTCATTTTTATGTACTTTT 278364 28 100.0 32 NNNNNNNNNN ............................ ATGTAGGCATTTGTTTTGATTTCTGTAATTTT 278424 28 100.0 32 NNNNNNNNNN ............................ ACGACTTGTTATAGCTTTAGTAGGCATAGGAA 278484 28 100.0 32 NNNNNNNNNN ............................ AATGGCACATAGTTTTGTTGGCTTGGGAGAAC 278544 28 100.0 32 NNNNNNNNNN ............................ GTCCATTTTATTTTCCTATTTTTTTAAAAGAA 278604 28 100.0 32 NNNNNNNNNN ............................ TATTTGTAATTCACCGATATTTTCAATTAACT 278664 28 100.0 32 NNNNNNNNNN ............................ TTAAAAAATATGCTGACAGATAGTTTTGAGGT 278724 28 100.0 32 NNNNNNNNNN ............................ CACGATTCCATAATTGGCGGTAGCCTTCATCT 278784 28 100.0 32 NNNNNNNNNN ............................ TTCGTCATAGTCTTTCTTAGTAATAGCATGCT 278844 28 100.0 32 NNNNNNNNNN ............................ TTGACGTTGCACTAATTGAGATGGCATGGAAA 278904 28 100.0 32 NNNNNNNNNN ............................ ATTAAGAATGGTTATATTTTGGTACAAAAAGA 278964 28 100.0 32 NNNNNNNNNN ............................ AAGAAGAAAGTATCAATGCTTTACTTTCATAT 279024 28 100.0 32 NNNNNNNNNN ............................ AAAAAATATACTACTTGTTAGTATAATAAATA 279084 28 100.0 32 NNNNNNNNNN ............................ ATTAAGACGGGAAAAATATTTACAAAAATTAT 279144 28 100.0 32 NNNNNNNNNN ............................ CCAAACTTATTTTTTAATTTGTTAATTCGATT 279204 28 100.0 32 NNNNNNNNNN ............................ TCTTTGTTTAAATCTTTGATTGATAAAATAAT 279264 28 100.0 32 NNNNNNNNNN ............................ ATATGCACAAACAGTTGAATTTGAAGACTTGC 279324 28 100.0 32 NNNNNNNNNN ............................ AAATAATTAAATGGGTTAGGGAATTAATAAAT 279384 28 100.0 32 NNNNNNNNNN ............................ TAGAAGACCGCCATTTAACGAAAATCACATGA 279444 28 100.0 32 NNNNNNNNNN ............................ AGAGCACAGAGAAGTTATTTTAAAACAAGCTA 279504 28 100.0 32 NNNNNNNNNN ............................ TTGAGCCCATGCCGGTGGTGCAACATTTTGAC 279564 28 100.0 32 NNNNNNNNNN ............................ TTGAGCCCATGCCGGTGGTGCAACATTTTGAC 279624 28 100.0 32 NNNNNNNNNN ............................ AACAAACTGCACTGATAAGCAATTATTGGTTG 279684 28 100.0 32 NNNNNNNNNN ............................ TAAAGCAGATGTACGAAAGATTCGTTTTATTT 279744 28 100.0 32 NNNNNNNNNN ............................ ACCAATAAAAATTATCTTTTCCCGTAATATAA 279804 28 100.0 32 NNNNNNNNNN ............................ ATGAATTTTGACAATTTAGAAATGATAAGAAA 279864 28 100.0 32 NNNNNNNNNN ............................ ACAATTTTGACTCGAATTTTTCTATTTTTGTG 279924 28 100.0 32 NNNNNNNNNN ............................ ATTAATGGCGGGATTTTTTTTGTCTGAACAAA 279984 28 100.0 32 NNNNNNNNNN ............................ TCTCAAATAGCCAATATTTACACTACTAAAAG 280044 28 100.0 32 NNNNNNNNNN ............................ ACGAATGAAGCGACTATTTAATCGTGGGCATT 280104 28 100.0 32 NNNNNNNNNN ............................ ATTTTGATCGTACTGTTTTACAAAATTACAGT 280164 28 100.0 32 NNNNNNNNNN ............................ ATTGAATTAAATAACGTGCTGTTTCTACACCA 280224 28 100.0 32 NNNNNNNNNN ............................ TATTCGGCAGTGAAGCAGAAGACAGTCAATGT 280284 28 100.0 32 NNNNNNNNNN ............................ TATTCGGCAGTGAAGTTTACTATCTTGCAAAA 280344 28 100.0 33 NNNNNNNNNN ............................ ATTTTTCCCAATTGCCATGAAATAAGTCTACAA 280405 28 100.0 32 NNNNNNNNNN ............................ AAATGAAAATAGAAGTCATTTAGGAGCAAGCC 280465 28 100.0 32 NNNNNNNNNN ............................ ACGAGCCATAGCTTCTTTACCAATTCCTGTTA 280525 28 100.0 32 NNNNNNNNNN ............................ AATTCCTGTTAGACCCAACAAAACAAAGTAAT 280585 28 100.0 32 NNNNNNNNNN ............................ ATTATTAATGAACTATTAAAAGTAAATCCAAA 280645 28 100.0 32 NNNNNNNNNN ............................ TTCTTCAACAAGACTATCGCTTAAAGAATCGT 280705 28 100.0 32 NNNNNNNNNN ............................ AACAAAATTATGTGCCATTGGTTGTTGCGTTG 280765 28 100.0 32 NNNNNNNNNN ............................ TTTTAGATTGAAATAGTGTTGCAATATTACTT 280825 28 100.0 32 NNNNNNNNNN ............................ TTTCCCGAGGTGCTTTTTCTTTTTCAGTTTCC 280885 28 100.0 32 NNNNNNNNNN ............................ AGATTCTGTCACACATTGGCAGCCTGTTCCAG 280945 28 100.0 32 NNNNNNNNNN ............................ GCACGTAATCGTTACGGTTGCTCAACAAAATT 281005 28 100.0 32 NNNNNNNNNN ............................ ACGATATTTAAACGTGAGATAAGCCCTTCTTC 281065 28 100.0 32 NNNNNNNNNN ............................ TAGCTTGTTTTAAAATAACTTCTCTGCGCTCT 281125 28 100.0 32 NNNNNNNNNN ............................ ATCGGAAGTAGTGTTAAATTTAATGGCTTACT 281185 28 100.0 33 NNNNNNNNNN ............................ AATGCCTAATTTAGATAGGGGCTAGGGTTTAAT 281246 28 100.0 32 NNNNNNNNNN ............................ AAGACCGGTAAAAACTATTGCAAAACTTGCTG 281306 28 100.0 32 NNNNNNNNNN ............................ CAAAGCAGATGAACGAAAAATTCGTTTTATTT 281366 28 100.0 33 NNNNNNNNNN ............................ CATAGGCAAAAATTAAGACCTAGGGGTGGGGGT 281427 28 100.0 32 NNNNNNNNNN ............................ TTCATCTAATGAGCTATTCATTTTATCGTCAC 281487 28 100.0 32 NNNNNNNNNN ............................ ATTATCAGTTTTTACAAATTTCCAACCTATCC 281547 28 100.0 32 NNNNNNNNNN ............................ TTTAAGTCGTCAATTGATGGCAGAAATTTTAA 281607 28 100.0 56 NNNNNNNNNN ............................ GAGTTAGTGAAATTAATGAACCGGTCCCTGATCTTCACTGCCGAATTGTCCTTTAA 281691 28 100.0 32 NNNNNNNNNN ............................ TTTTTAAAAATCTCTGTAACAAAATCATATAT 281751 28 100.0 32 NNNNNNNNNN ............................ TTTACCTGATTTGTTGTATAAATCTAGTAAAA 281811 28 100.0 32 NNNNNNNNNN ............................ AACTTTTATTTATTTCGATGTCATTTTTCATC 281871 28 100.0 32 NNNNNNNNNN ............................ AAGCTTCCAAAATTTTTGAAGTAGCGGCTGCT 281931 28 100.0 32 NNNNNNNNNN ............................ TGTAATATAAACATTTGTAAAAAATCCATTTT 281991 28 100.0 32 NNNNNNNNNN ............................ ACTAAAAGCTTAAAATAAATTAAGCTACCACC 282051 28 100.0 32 NNNNNNNNNN ............................ AAGAACATTAAAGAAGTGTCTGCTCCTGCTTT 282111 28 100.0 32 NNNNNNNNNN ............................ TACAATTAAAACTCCAATTTTGTGCCCTTTTA 282171 28 100.0 32 NNNNNNNNNN ............................ TGAATATTTAATAAAACAATTATTAATCTTAT 282231 28 100.0 32 NNNNNNNNNN ............................ TAACAAATCCTTTCGGCGTTTGATGAGTAAGT 282291 28 100.0 32 NNNNNNNNNN ............................ ATCGTCTAAAGAACTGTTAATATTGTTATCAC 282351 28 100.0 32 NNNNNNNNNN ............................ TACGGCTAATCCATTCCCGACAGCACAACCGG 282411 28 100.0 32 NNNNNNNNNN ............................ AAGATGATAACATTTTGAACTTTTCTGTTCAT 282471 28 100.0 32 NNNNNNNNNN ............................ ATGGAAAGGCGCGATGATTTGGTGCAATCCTC 282531 28 100.0 32 NNNNNNNNNN ............................ TGTTCAATGGCGTATTAGTTCTTGTAAGGGTC 282591 28 100.0 32 NNNNNNNNNN ............................ AGTATATAACCCATTTTCGTCTAATTCTCTCG 282651 28 100.0 32 NNNNNNNNNN ............................ ATTCAAAATTCGCTTTGCTTGTGATATATCTT 282711 28 100.0 32 NNNNNNNNNN ............................ TTTTCCAGATGGTGAAAATTCAGCATAAGTAT 282771 28 100.0 32 NNNNNNNNNN ............................ TAGCATACCATAATACAAAAACTAATCATGGA 282831 28 100.0 32 NNNNNNNNNN ............................ TTTAATAAAAGATTCAATAACTGATCTAGGTA 282891 28 100.0 32 NNNNNNNNNN ............................ TAACATTTCATACAGATTCAAGAAACGTTGTT 282951 28 100.0 32 NNNNNNNNNN ............................ TTTAAATTTAAAAAATCTATAATTGCTCAAAT 283011 28 100.0 32 NNNNNNNNNN ............................ TTTATATTAAAGCTGATTATCTTCTAAGAATT 283071 28 100.0 32 NNNNNNNNNN ............................ TCTGAAATAGCTAATATTTCCACCAATAAAAG 283131 28 100.0 32 NNNNNNNNNN ............................ AAAAGCGATCGCATGCTCCGCAACTGCAAAAA 283191 28 100.0 32 NNNNNNNNNN ............................ AAGATGATAACATTCTGAACTTTTCTGTTCAT 283251 28 100.0 33 NNNNNNNNNN ............................ ATTCTTCTACCAGTATTTGAACAATACCTTTTA 283312 28 100.0 32 NNNNNNNNNN ............................ ATTGATCAACAATATTTTTCAATGTTTGATAT 283372 28 100.0 32 NNNNNNNNNN ............................ ACCAATAAAAATTATCTTGCTTTGTAATATAA 283432 28 100.0 33 NNNNNNNNNN ............................ CTCTATGCCGATAAATTGGAGTTCTTACACCCT 283493 28 100.0 32 NNNNNNNNNN ............................ TATCATTAATACAGAGTTGAGCATTAATTCTT 283553 28 100.0 32 NNNNNNNNNN ............................ AAATCAGAAAGATAAAAAATGTAAGTCCAAAG 283613 28 100.0 32 NNNNNNNNNN ............................ CGGGTATTACAGAGCTGCAAAAAGCATATAGC 283673 28 100.0 32 NNNNNNNNNN ............................ ACCTGGTGTTGTAAAGGGGTGACGTTTGAAAC 283733 28 100.0 32 NNNNNNNNNN ............................ TCTGCAATCAGCTTTTCGGTGCCGTAGGCTTG 283793 28 100.0 32 NNNNNNNNNN ............................ CTTACCATCACCTTTGCCATTGTTTGTTCCGG 283853 28 100.0 32 NNNNNNNNNN .................T.......... GGCAGCGGTAAAAGTTATGAGGTGGTCCATTC 283913 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 153 28 32 CTTCACTGCCGAATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [182,1835] Score: 0.18/0.18 # # Final direction: F [0.64,0.18 Confidence: MEDIUM] >NC_017860 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 194523 31 100.0 35 NNNNNNNNNN .......G.G..................... GCAACAAAAATCAGTCCTTCCGCTATTGGAATGCT 194589 31 100.0 35 NNNNNNNNNN ...A........................... GCAACAGCTGAGTTTGAAGCTAAAATTCTCGCTGA 194655 31 100.0 34 NNNNNNNNNN ............................... GCAACTGTGTTCTAAAAGAGTACATTACCATAGG 194720 31 100.0 34 NNNNNNNNNN ............................... GCAACTTTTATCTACTTTCACGTATTGTTAAGGA 194785 31 100.0 35 NNNNNNNNNN ............................... GCAACTTATTATCACACTGTTAAAGATTGGAGTGA 194851 31 100.0 35 NNNNNNNNNN ............................... GCAACAGAAACAAATATTGAGGAAAAATTAAAATC 194917 31 100.0 34 NNNNNNNNNN ............................... GCAACGGTAAAGTGAACGAGCTCATTGCCAACAA 194982 31 100.0 33 NNNNNNNNNN ............................... GCAACTAGGTCAATTGTGCCACAAAACAAATAA 195046 31 100.0 35 NNNNNNNNNN ............................... ACAACTTGTTCTTAGATGAGTTAACCACATGTAAT 195112 31 100.0 35 NNNNNNNNNN ............................... ACAACCTTACTACTTTCATTGCTAACGTACTCTTG 195178 31 100.0 35 NNNNNNNNNN ............................... ACAACGTATGGTTACGAACTTGTTCTTGCCAGAGT 195244 31 100.0 35 NNNNNNNNNN ............................... ACAACTGGTGCTAAGAGCGTAAAGGACCTTAAGGT 195310 31 100.0 35 NNNNNNNNNN ............................... ACAACAGATACTATAATAGAACTATATCAAGAATT 195376 31 100.0 35 NNNNNNNNNN ............................... ACAACATACAGGAGCAAGAATAGAACTATTAAGAA 195442 31 100.0 34 NNNNNNNNNN ............................... GCAACTTATTAGATTATCGCTTTGTAGTTGATGT 195507 31 100.0 34 NNNNNNNNNN ............................... GCAACGGCTATGGAAAACGTAGACGCAAACGCTA 195572 31 100.0 1 NNNNNNNNNN ............................... NNNNNNNNNN ========== ====== ====== ====== ========== =============================== 17 31 34 GTTGTTTTTACCTTGCAAACAGCAGGCAGAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.06%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.80,-4.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [20,31] Score: 0/0.18 # # Final direction: R [0.37,0.68 Confidence: LOW] >NC_017857 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2646109 28 100.0 32 NNNNNNNNNN AC.TC.T.......A.........A... CAGTTACCTGAACTCGGAGCTACGAGAAAGCA 2646169 28 100.0 32 NNNNNNNNNN ............................ CTGGTCGCGTGGTATTTTGACGGGCATGTGAT 2646229 28 100.0 32 NNNNNNNNNN ............................ TGTTTAAGTGAGGTGCGTTCGGTGCCGGAACT 2646289 28 100.0 32 NNNNNNNNNN ............................ GTAGCCGGTGCAGCCAATAGTGTATTCCCGGC 2646349 28 100.0 32 NNNNNNNNNN ............................ AATCGCGCCCATTTTCGGCAAGTCGCTGATTT 2646409 28 100.0 32 NNNNNNNNNN ............................ AGCCGCGCATCCGGCGAATATTCCAGGCGGTT 2646469 28 100.0 32 NNNNNNNNNN ............................ ACATGGTGCTTAATTAAATGAGGTGTTATTAT 2646529 28 100.0 32 NNNNNNNNNN ............................ TGCCCCATGTATATACATAAAGAATTGCTTCT 2646589 28 100.0 32 NNNNNNNNNN ............................ AATGACCTTCTTAGATGCTTTACAGCATGCCT 2646649 28 100.0 32 NNNNNNNNNN ............................ GTCCAGCAGCAGGGCAGCCAGAATTTGCTACA 2646709 28 100.0 32 NNNNNNNNNN ............................ AATGACAATGGCAGCGATAAAAGGCCAGATTT 2646769 28 100.0 32 NNNNNNNNNN ............................ AAAACAACCAGCTACGTGCTGATGTTGATGCT 2646829 28 100.0 32 NNNNNNNNNN ............................ AAGCTGAGACAGACGTTTTATTGCTTGATGCT 2646889 28 100.0 32 NNNNNNNNNN ............................ CTATAGCTCACCCTCACGGCTATTCCGATCAG 2646949 28 100.0 32 NNNNNNNNNN ............................ CCAGAAACAGTTGAGGCCTCGGCATCGGTGTA 2647009 28 100.0 32 NNNNNNNNNN ............................ CGGGGGCGGCTCCATTATCCACGCTGGAACTA 2647069 28 100.0 32 NNNNNNNNNN ............................ GACGATAACTAACAGCAGCAAAATACAAGTCA 2647129 28 100.0 32 NNNNNNNNNN ............................ CGGCAGGAACTTCTTACGATAATACATCTTCT 2647189 28 100.0 32 NNNNNNNNNN ............................ TTTGTTTATTGCATTTAACAGCATACATTGAC 2647249 28 100.0 32 NNNNNNNNNN ............................ GCCGAAATCAGTCAGGCGTTTTTAACCGCACA 2647309 28 100.0 32 NNNNNNNNNN ............................ GGATGAGTGAATTAATAAAACCATATGTAAAA 2647369 28 100.0 32 NNNNNNNNNN ............................ GAGCCAGCATCTACCGTAGCTTACATGCCGTG 2647429 28 100.0 32 NNNNNNNNNN ............................ ATCAGAAAGGTTATCGACGGTACACGTGGTGA 2647489 28 100.0 32 NNNNNNNNNN ............................ CCGTTTTTGTGCCAATCAATGACGTTCTGTAT 2647549 28 100.0 32 NNNNNNNNNN ............................ CAGGTTTTTGCGTTTGAGTCAGATGGCAGTCA 2647609 28 100.0 32 NNNNNNNNNN ............................ AATGGCAATCCCTAACCGCAAACGGCACAAGT 2647669 28 100.0 32 NNNNNNNNNN ............................ TTTAAAAGCGACCATTTAGGCGTTGCTGATTT 2647729 28 100.0 32 NNNNNNNNNN ............................ CAAAAAGCGATAGACCGCAGAAGCGACTATCA 2647789 28 100.0 32 NNNNNNNNNN ............................ TACCTGAGACCCTGCCACCCCTGAAAATGTCA 2647849 28 100.0 32 NNNNNNNNNN ............................ CGAGTAAAACTGTGATTAAAAAAACGGTGATT 2647909 28 100.0 32 NNNNNNNNNN ............................ TATCAGGAATTTTTCTGTTAATTAAATGAATA 2647969 28 100.0 32 NNNNNNNNNN ............................ TCAGTGGAAAAGCGGGATTCTGATATAGCTTA 2648029 28 100.0 32 NNNNNNNNNN ............................ AACGACATAAGCGCGCCACAAGCATCGAGCAT 2648089 28 100.0 32 NNNNNNNNNN ............................ ATCATCTTTGCAGACGGCAAAGTACAATGCTC 2648149 28 100.0 32 NNNNNNNNNN ............................ AGATAAAGCAATTTTTTGAGGGGATGATAAAT 2648209 28 100.0 32 NNNNNNNNNN ............................ TGGTAAAGGCGAGCTAAAGCCAAAACGCAACT 2648269 28 100.0 32 NNNNNNNNNN ............................ GCGCTATCAAGGGTGCAACATGGCATATCCAA 2648329 28 100.0 33 NNNNNNNNNN ............................ AACCACCCTCAGCAGATAGCACAACTGGACTTG 2648390 28 100.0 32 NNNNNNNNNN ............................ GTGGATAGTCGTGAGATGGGTGATGAGCTAAC 2648450 28 100.0 32 NNNNNNNNNN ............................ GAAGGATCACCTCTAGGTTGTCAGGATGCATA 2648510 28 100.0 32 NNNNNNNNNN ............................ TGAAAAGCATTTCTTTGAATACCAACAGTTAT 2648570 28 100.0 32 NNNNNNNNNN ............................ CGTTTAAGTGAGGTGCGTTCGGTGCCGGAACT 2648630 28 100.0 32 NNNNNNNNNN ............................ GTAGCCGGTGCAGCCAATAGTGTATTCCCGGC 2648690 28 100.0 32 NNNNNNNNNN ............................ AATCGCGCCCATTTTCGGCAAGTCGCTGATTT 2648750 28 100.0 32 NNNNNNNNNN ............................ AGCCGCGCATCCGGCGAATATTCCAGGCGGTT 2648810 28 100.0 32 NNNNNNNNNN ............................ ACATGGTGCTTAATTAAATGAGGTGTTATTAT 2648870 28 100.0 32 NNNNNNNNNN ............................ TGCCCCATGTATATACATAAAGAATTGCTTCT 2648930 28 100.0 32 NNNNNNNNNN ............................ AATGACCTTCTTAGATGCTTTACAGCATGCCT 2648990 28 100.0 32 NNNNNNNNNN ............................ GTCCAGCAGCAGGGCAGCCAGAATTTGCTACA 2649050 28 100.0 32 NNNNNNNNNN ............................ AATGACAATGGCAGCGATAAAAGGCCAGATTT 2649110 28 100.0 32 NNNNNNNNNN ............................ AAAACAACCAGCTACGTGCTGATGTTGATGCT 2649170 28 100.0 32 NNNNNNNNNN ............................ AAGCTGAGACAGACGTTTTATTGCTTGATGCT 2649230 28 100.0 32 NNNNNNNNNN ............................ CTATAGCTCACCCTCACGGCTATTCCGATCAG 2649290 28 100.0 32 NNNNNNNNNN ............................ CCAGAAACAGTTGAGGCCTCGGCATCGGTGTA 2649350 28 100.0 32 NNNNNNNNNN ............................ CGGGGGCGGCTCCATTATCCACGCTGGAACTA 2649410 28 100.0 32 NNNNNNNNNN ............................ GACGATAACTAACAGCAGCAAAATACAAGTCA 2649470 28 100.0 32 NNNNNNNNNN ............................ GCTTACGCGGATTAAAACGCTTAGCTGATGAA 2649530 28 100.0 32 NNNNNNNNNN ............................ TAGAACTTATTTCTGACTTGGGTTCTGGTGAT 2649590 28 100.0 32 NNNNNNNNNN ............................ AGAAACTTCACATTCAACAGTAACAGGCCATT 2649650 28 100.0 32 NNNNNNNNNN ............................ GGCGTGCTTCTGTTTCGACGTCAAGAGTGGCT 2649710 28 100.0 32 NNNNNNNNNN ............................ GAATTGCTTTAACATCGCTGGCCACCTTTTCA 2649770 28 100.0 32 NNNNNNNNNN ............................ GTACCCTTCTGTCTGCTGACTGATATAGTTCA 2649830 28 100.0 32 NNNNNNNNNN ............................ CATTAGTTCACCTTTGATAAATTGCGGGGAAA 2649890 28 100.0 32 NNNNNNNNNN ............................ GTGCCTCTTTGGGCGTGCTTTCGTTATAGTTT 2649950 28 100.0 32 NNNNNNNNNN ............................ TTATCAATAATACTTGAAGATGCAGCAAGTAA 2650010 28 100.0 32 NNNNNNNNNN ............................ AAGGCAACCCCCCATACTGCAATAACTGAAGC 2650070 28 100.0 32 NNNNNNNNNN ............................ ACAGGGGGGTCTTCGGACCCCCCCTTTTTTTT 2650130 28 100.0 32 NNNNNNNNNN ............................ TTTCAGAAGAACCCCATGGGGAAGAGGTGAAT 2650190 28 100.0 32 NNNNNNNNNN ............................ GCAGAGCCGGAAGCGGTCGAAGTGGTCAACAT 2650250 28 100.0 32 NNNNNNNNNN ............................ CTTCAAACCCATCAACCAGCAATCCTTTAATA 2650310 28 100.0 32 NNNNNNNNNN ............................ ATCATTTCAACTTGAAGTCCCTAATTATGTCT 2650370 28 100.0 31 NNNNNNNNNN ............................ TCAAGCCGATCTGGATGCGTTGGCCTTTTAT 2650429 28 100.0 32 NNNNNNNNNN ............................ TGTTGATGCCCATCGTTCAACTGGCAACGGTT 2650489 28 100.0 32 NNNNNNNNNN ............................ CAAGTGATGCCCATCCTGTAAGTGAAATCGGT 2650549 28 100.0 32 NNNNNNNNNN ............................ GGGTAATAAGCACTTACATTCGATTAGGCGCA 2650609 28 100.0 32 NNNNNNNNNN ............................ TTTATGACGGACTGTTTTCTTTGCCCTGTTTT 2650669 28 100.0 32 NNNNNNNNNN ............................ TTCCAGCGTTCTTTGAAACGCCATTTCATTAA 2650729 28 100.0 32 NNNNNNNNNN ............................ ATATTTTTCGCTGTGTTCTTCTACGCCATAAA 2650789 28 100.0 32 NNNNNNNNNN ............................ AGCACATGAATACATAACCCAATACAAGTTAA 2650849 28 100.0 32 NNNNNNNNNN ............................ GCCAACTTGCAGCGGGCGGTTTAACGCGCTCA 2650909 28 100.0 32 NNNNNNNNNN ............................ TTTGCAGCACCTTCATCGGCTTGCTGACTGAT 2650969 28 100.0 32 NNNNNNNNNN ............................ GTCGGATGAATTGGCGCGATGTATTAAGCAGT 2651029 28 100.0 32 NNNNNNNNNN ............................ GAAACCGCTTGCCGGAAAATCATCACCAGCAA 2651089 28 100.0 32 NNNNNNNNNN ............................ AACCGGTCATACAGCCAAAGTCGTTCACTCAT 2651149 28 100.0 32 NNNNNNNNNN ............................ CTATCTGTGCGCTGCGGATTGGCAATCGGCGT 2651209 28 100.0 32 NNNNNNNNNN ............................ GTCTTTCAATCACATCATCAGTCAGCGGTTTA 2651269 28 100.0 32 NNNNNNNNNN ............................ GTTTTCTTTGCTCTGTTTTGGGATTTGGTCAG 2651329 28 100.0 32 NNNNNNNNNN ............................ CCTGTGCTTTCTGTTTCTCGTGCTGCTGGTAT 2651389 28 100.0 32 NNNNNNNNNN ............................ GCTTGCGGGGATTAAAACGCTTAGCTGAAGAA 2651449 28 100.0 32 NNNNNNNNNN ............................ TCATGATGAACCTCTGAAAAAGTTTTAGGAAA 2651509 28 100.0 32 NNNNNNNNNN ............................ ACATGGCGCTTAATTAAATGAGGTGTTCTTAT 2651569 28 100.0 32 NNNNNNNNNN ............................ ATGGTCAATGCGTGAACGAATGGTTTCATGGT 2651629 28 100.0 32 NNNNNNNNNN ............................ ACCTGTTATTCCTGATTCTACTATCACTGATG 2651689 28 100.0 32 NNNNNNNNNN ............................ ACTCTAATCAAAACCGTTTAACTGTTGCTGGT 2651749 28 100.0 32 NNNNNNNNNN ............................ GCGGCTATGACGCAGCCCCATTCATTGAGTCT 2651809 28 100.0 32 NNNNNNNNNN ............................ ACTTGGTACACCGATAACCATAAAGGCTGGCA 2651869 28 100.0 32 NNNNNNNNNN ............................ CAGCAATTGAGACTGGCGCCTCTTGACCGTCT 2651929 28 100.0 32 NNNNNNNNNN ............................ CCGTAAGTGTCGCGACCTCATCAAGTCAGACT 2651989 28 100.0 32 NNNNNNNNNN ............................ TCAACCACCGCGACCGCTATTGATCTAGCTAA 2652049 28 100.0 32 NNNNNNNNNN ............................ ACGACTATGACCCAAATGCCTATGCCGGATAT 2652109 28 100.0 32 NNNNNNNNNN ............................ ATCGCACAGCCTCACCACTAGAAAGGTGGAAA 2652169 28 100.0 32 NNNNNNNNNN ............................ GATAGCTATGGACGCGCTCAAAACAAGATATG 2652229 28 100.0 32 NNNNNNNNNN ............................ AAGTTATGGCCGAACACGGGCAGAGTGATAAA 2652289 28 100.0 32 NNNNNNNNNN ............................ GCTGTGGTTATGGCGGCTACCAAGATTTGTGA 2652349 28 100.0 32 NNNNNNNNNN ............................ TGGGTTAGGATTGAAATGCCTACGGGCTTAAT 2652409 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 106 28 32 TTTCTAAGCTGCCTGTTCGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [394,283] Score: 0/0.18 # # Final direction: R [0,1.15 Confidence: HIGH] >NC_017906 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 3525893 30 100.0 31 NNNNNNNNNN ................AT............ GCGGCACGCTGGATTGAACAAATCCCTGGGC 3525954 30 100.0 31 NNNNNNNNNN .............................. AACCGAAACACACGATCAATCCGAATATGAG 3526015 30 100.0 31 NNNNNNNNNN .............................T TTGGTGACAGTTTTTGTCACTGTTTTGGTGA 3526076 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 4 30 31 CGGTTTATCCCCGCTGGCGCGGGGAACACA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [5,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-14.20,-14.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [83,97] Score: 0/0.18 # # Final direction: R [0,1.55 Confidence: HIGH] >NC_017910 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3137494 29 100.0 32 NNNNNNNNNN G..G........A.G..G.T........T ATATAAACCTGATCATCCGTGTCCATATGCCA 3137555 29 100.0 32 NNNNNNNNNN ............................. AATGCTCGCGGGGAATGAACCTGTAAGCGCTG 3137616 29 100.0 32 NNNNNNNNNN ............................. AAACAGTTTACTGGCGCGACTGTGCCATTCAG 3137677 29 100.0 32 NNNNNNNNNN ............................. GCCACGGCCACAACGATAGGCGGGACCATCTG 3137738 29 100.0 32 NNNNNNNNNN ............................. ATCCAGTCAACATCAAACGAATAGCGGTAAAC 3137799 29 100.0 32 NNNNNNNNNN ............................. ATATGCAGAGAATCTCTTCATGTTTTTTATTT 3137860 29 100.0 32 NNNNNNNNNN ............................. ATCCTGTAGCGGTTATTAGTGCTGTTGTTGCA 3137921 29 100.0 32 NNNNNNNNNN ............................. CTGGTGAATGACGAGGGGACATATTCGTTTAA 3137982 29 100.0 32 NNNNNNNNNN ............................. GCTGGCAGGCTAACCCATGGGTTTGGGTGATC 3138043 29 100.0 32 NNNNNNNNNN G............................ GAAGAACCGATCACGGCAAAAGAAGCCGCCAC 3138104 29 100.0 32 NNNNNNNNNN ............................. CATTTCACCGTAAATTCTTCGCACTGCTGAAC 3138165 29 100.0 32 NNNNNNNNNN ............................. ACACCATTATGTTTTCTACTGCTGATGGTGAC 3138226 29 100.0 32 NNNNNNNNNN ............................. AACAGCGTGCCCGCGTTAACGATATCAATAAT 3138287 29 100.0 32 NNNNNNNNNN ............................. TTTTTTACCTGTTTGATAAGCCATTTTGTTTC 3138348 29 100.0 32 NNNNNNNNNN ............................. AACAAACACAGCCGGTGAATTTAATAACCACG 3138409 29 100.0 32 NNNNNNNNNN ............................. GCACATTCCAGGGCCAATTTCTTAATATCATA 3138470 29 100.0 32 NNNNNNNNNN G...............A............ CCTGGATAAATTAGGTTCTATTAACGTTGCCA 3138531 29 100.0 32 NNNNNNNNNN ............................. GGTTGCTCGCTCAATAAACAGAGATTCATTCT 3138592 29 100.0 32 NNNNNNNNNN ............................. TGGAAACGACACCGCAAGAGAAGTTAAACGAT 3138653 29 100.0 32 NNNNNNNNNN ............................. AAGAATTGCTGAATTAGGATATATCCCAATCA 3138714 29 100.0 32 NNNNNNNNNN ............................. CTGGCGATCATATTTATCATCGCCTTGTCTAT 3138775 29 100.0 32 NNNNNNNNNN ............................. GCACCGGATTTATGCGTGGTTCTCCGCCGTTG 3138836 29 100.0 33 NNNNNNNNNN ............................. GTGATATCAGTTGTCATGCTTGGACTCCACGCG 3138898 29 100.0 32 NNNNNNNNNN ............................. AATTCCCTGATATGAAAAACAATCTGGAAGCG 3138959 29 100.0 32 NNNNNNNNNN ............................. GCCTGCCCAGCCGCGTTAAATCGGTTAAGGAC 3139020 29 100.0 32 NNNNNNNNNN ............................. ATTAGCAGCACTGGTCACTGCAATTGTGTTTT 3139081 29 100.0 32 NNNNNNNNNN ............................. TTGCTAACCAGTTTTACAGTCTTAGCAAATTT 3139142 29 100.0 32 NNNNNNNNNN ............................. AAATGATGGTGATAAAACCATACTGAAACAGG 3139203 29 100.0 32 NNNNNNNNNN ............................. GACGGCACCGCATCGCCGACCATGGTGATCAC 3139264 29 100.0 32 NNNNNNNNNN ............................. TAGAAGAAGAATAACAATTGGGGCGAAAGCCC 3139325 29 100.0 32 NNNNNNNNNN ............................. AAGCTAGGAATGAAAACATAATATCACAGTTG 3139386 29 100.0 32 NNNNNNNNNN ............................. GTTCTGAGGCTGAAATTAAATTGGTGCGTGAA 3139447 29 100.0 32 NNNNNNNNNN ............................. AAAATCAATGAGATGAAAGCAACCATAGAAAA 3139508 29 100.0 32 NNNNNNNNNN ............................. AAATGGAGAATCCTGTATCAGGAAACCAATTC 3139569 29 100.0 32 NNNNNNNNNN ............................. GGAAAGAGAAAAATTTAGTCGTGATGTGGAAA 3139630 29 100.0 32 NNNNNNNNNN T............................ TTGCGATCCAGATGCCGGAAATCAAAGAGCAT 3139691 29 100.0 32 NNNNNNNNNN ............................. GTATCTCTGTATGTAAAGAAATCCGTAATTTA 3139752 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 38 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [208,86] Score: 0.18/0.18 # # Final direction: R [0.18,1.92 Confidence: HIGH] >NC_017860 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 194785 36 100.0 30 TTGTTAAGGA .................................... TTATTATCACACTGTTAAAGATTGGAGTGA 194851 36 100.0 30 ATTGGAGTGA .................................... AGAAACAAATATTGAGGAAAAATTAAAATC 194917 36 100.0 29 AATTAAAATC .................................... GGTAAAGTGAACGAGCTCATTGCCAACAA 194982 36 100.0 28 TTGCCAACAA .................................... TAGGTCAATTGTGCCACAAAACAAATAA 195046 36 97.2 30 AAACAAATAA ...............................A.... TTGTTCTTAGATGAGTTAACCACATGTAAT 195112 36 97.2 30 CACATGTAAT ...............................A.... CTTACTACTTTCATTGCTAACGTACTCTTG 195178 36 97.2 30 CGTACTCTTG ...............................A.... GTATGGTTACGAACTTGTTCTTGCCAGAGT 195244 36 97.2 30 TTGCCAGAGT ...............................A.... TGGTGCTAAGAGCGTAAAGGACCTTAAGGT 195310 36 97.2 30 ACCTTAAGGT ...............................A.... AGATACTATAATAGAACTATATCAAGAATT 195376 36 97.2 30 ATCAAGAATT ...............................A.... ATACAGGAGCAAGAATAGAACTATTAAGAA 195442 36 100.0 29 CTATTAAGAA .................................... TTATTAGATTATCGCTTTGTAGTTGATGT 195507 36 100.0 29 TAGTTGATGT .................................... GGCTATGGAAAACGTAGACGCAAACGCTA 195572 36 100.0 GCAAACGCTA .................................... GCACCTAACC ========== ====== ====== ====== ========== ==================================== 13 36 29 GTTGTTTTTACCTTGCAAACAGCAGGCAGATGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.10,-7.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [282,26] Score: 0.18/0.18 # # Final direction: R [0.18,0.37 Confidence: MEDIUM] >NC_017861 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================================== ====== 246278 47 100.0 29 ATCTACTTGA ............................................... ATAAAATTTAAAATTATGCAAACTTTTTT 246354 47 100.0 29 AAACTTTTTT ............................................... GGACAACTTCAAAAAGTTATCTTTCAGCG 246430 47 100.0 30 TCTTTCAGCG ............................................... CGCCCTATCGTCATTTCAATGCCACCGAGT 246507 47 100.0 29 GCCACCGAGT ............................................... CAAAAGCGGTCGTAAGGGCTTTTATCCCG 246583 47 100.0 29 TTTTATCCCG ............................................... TGGTGCAACCAAGTGGAGCGTATATTGTA 246659 47 100.0 30 GTATATTGTA ............................................... TATCAAATACAGGCGCATACTCCTTGTACA 246736 47 100.0 30 TCCTTGTACA ............................................... TTTCTTCAAATAATTTCCTGTGCCTACGTT 246813 47 100.0 29 TGCCTACGTT ............................................... TTTTTCGTTTCGTTCACACGTTGATATTC 246889 47 100.0 30 GTTGATATTC ............................................... CCTGCTCTACTTGTTGTATAGTTTCGTTCT 246966 47 100.0 30 GTTTCGTTCT ............................................... AGGAAAGAATAAACAGTGCTTGGAAATAAT 247043 47 100.0 30 TGGAAATAAT ............................................... CGCCTCAACATTGCCAATATCCTCTCTCTA 247120 47 100.0 30 CCTCTCTCTA ............................................... CTTAGGTATGTTAGTTAGTGGTGCTGTTGG 247197 47 100.0 29 GTGCTGTTGG ............................................... GGCTATGCGCTCGATGCATATAATACTAA 247273 47 100.0 30 ATAATACTAA ............................................... CACAGACACATCAATAATAGTAACTTTCTC 247350 47 100.0 30 TAACTTTCTC ............................................... GCGGGTGCAGCACTTGCCTACTTATACACA 247427 47 100.0 30 CTTATACACA ............................................... TTGAAAATTATTGACATTAAAGGAAAGGGC 247504 47 100.0 30 AGGAAAGGGC ............................................... ATTTAATCTAAAAACTTTCATATTTATTTA 247581 47 100.0 30 TATTTATTTA ............................................... CACGTGTAACGATAGCACAGTTTCCGTCCT 247658 47 100.0 30 TTTCCGTCCT ............................................... CTGCCACCGTAACAACGTTTGAGCCATTAA 247735 47 100.0 30 GAGCCATTAA ............................................... AATAAACTGTAATACTTCTTTTAGGTCTAC 247812 47 100.0 30 TTAGGTCTAC ............................................... TATACGACCAAATATTGAAGCAGAACCTTA 247889 47 100.0 30 CAGAACCTTA ............................................... TGACGCTATGGGTTACGAACTTACCCCAAT 247966 47 100.0 30 TTACCCCAAT ............................................... GGAAAGATGTTGTTGTATTGCTTGCTGCAG 248043 47 100.0 30 CTTGCTGCAG ............................................... CAACAACGTTAAAAAGTGGCAACCCATTTA 248120 47 100.0 30 AACCCATTTA ............................................... GCCCGTCAAATACTCGGCTTAGCTTATCAA 248197 47 100.0 30 AGCTTATCAA ............................................... CCACTCGAAAAAGGTAGTATCGGACGAAGA 248274 47 100.0 30 CGGACGAAGA ............................................... AAGCTCAAAGCCTTTACAATGCTGCTATTA 248351 47 100.0 30 GCTGCTATTA ............................................... AGGGGATTTAATAATGACATACCACTAGGT 248428 47 100.0 29 ACCACTAGGT ............................................... CGATTGTTTTCTCGTCGCCTTTCACGAGT 248504 47 100.0 30 TTTCACGAGT ............................................... GGAAACATAAAACCTAAATTCATATCCTTT 248581 47 100.0 30 CATATCCTTT ............................................... TGTCAGCCTTTCCGTATTTGTCCTTTGGCA 248658 47 100.0 30 TCCTTTGGCA ............................................... TTCTATTTGGTCTGATAATTTAAATTATGG 248735 47 100.0 30 TAAATTATGG ............................................... GGTTATTCTCTCGACCCTAATTGTCAGAAT 248812 47 100.0 30 TTGTCAGAAT ............................................... ATGCCGAAGATGTAAGTAATGGTAGTGCCA 248889 47 100.0 30 GGTAGTGCCA ............................................... TAAAAATTTATATTGAAAAGATATGATAAA 248966 47 100.0 30 ATATGATAAA ............................................... AAACAGTCTTTGAAAATCTTGTGAAAATGC 249043 47 100.0 29 GTGAAAATGC ............................................... GACTATGGTATCTTCGTTATCGTCTACTT 249119 47 97.9 TCGTCTACTT .........A..................................... AACCTCCGAG ========== ====== ====== ====== ========== =============================================== 38 47 29 GTTGTATTTGCCAATGCAAAGATACTAATTTTAAAGCTAATCACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.21%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-3.10,-3.30] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [122,210] Score: 0/0.18 # # Final direction: F [0.68,0 Confidence: HIGH] >NC_017861 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 246288 37 100.0 39 NNNNNNNNNN ..................................... ATAAAATTTAAAATTATGCAAACTTTTTTGTTGTATTTG 246364 37 100.0 39 NNNNNNNNNN ..................................... GGACAACTTCAAAAAGTTATCTTTCAGCGGTTGTATTTG 246440 37 100.0 40 NNNNNNNNNN ..................................... CGCCCTATCGTCATTTCAATGCCACCGAGTGTTGTATTTG 246517 37 100.0 39 NNNNNNNNNN ..................................... CAAAAGCGGTCGTAAGGGCTTTTATCCCGGTTGTATTTG 246593 37 100.0 39 NNNNNNNNNN ..................................... TGGTGCAACCAAGTGGAGCGTATATTGTAGTTGTATTTG 246669 37 100.0 40 NNNNNNNNNN ..................................... TATCAAATACAGGCGCATACTCCTTGTACAGTTGTATTTG 246746 37 100.0 40 NNNNNNNNNN ..................................... TTTCTTCAAATAATTTCCTGTGCCTACGTTGTTGTATTTG 246823 37 100.0 39 NNNNNNNNNN ..................................... TTTTTCGTTTCGTTCACACGTTGATATTCGTTGTATTTG 246899 37 100.0 40 NNNNNNNNNN ..................................... CCTGCTCTACTTGTTGTATAGTTTCGTTCTGTTGTATTTG 246976 37 100.0 40 NNNNNNNNNN ..................................... AGGAAAGAATAAACAGTGCTTGGAAATAATGTTGTATTTG 247053 37 100.0 40 NNNNNNNNNN ..................................... CGCCTCAACATTGCCAATATCCTCTCTCTAGTTGTATTTG 247130 37 100.0 40 NNNNNNNNNN ..................................... CTTAGGTATGTTAGTTAGTGGTGCTGTTGGGTTGTATTTG 247207 37 100.0 39 NNNNNNNNNN ..................................... GGCTATGCGCTCGATGCATATAATACTAAGTTGTATTTG 247283 37 100.0 40 NNNNNNNNNN ..................................... CACAGACACATCAATAATAGTAACTTTCTCGTTGTATTTG 247360 37 100.0 40 NNNNNNNNNN ..................................... GCGGGTGCAGCACTTGCCTACTTATACACAGTTGTATTTG 247437 37 100.0 40 NNNNNNNNNN ..................................... TTGAAAATTATTGACATTAAAGGAAAGGGCGTTGTATTTG 247514 37 100.0 40 NNNNNNNNNN ..................................... ATTTAATCTAAAAACTTTCATATTTATTTAGTTGTATTTG 247591 37 100.0 40 NNNNNNNNNN ..................................... CACGTGTAACGATAGCACAGTTTCCGTCCTGTTGTATTTG 247668 37 100.0 40 NNNNNNNNNN ..................................... CTGCCACCGTAACAACGTTTGAGCCATTAAGTTGTATTTG 247745 37 100.0 40 NNNNNNNNNN ..................................... AATAAACTGTAATACTTCTTTTAGGTCTACGTTGTATTTG 247822 37 100.0 40 NNNNNNNNNN ..................................... TATACGACCAAATATTGAAGCAGAACCTTAGTTGTATTTG 247899 37 100.0 40 NNNNNNNNNN ..................................... TGACGCTATGGGTTACGAACTTACCCCAATGTTGTATTTG 247976 37 100.0 40 NNNNNNNNNN ..................................... GGAAAGATGTTGTTGTATTGCTTGCTGCAGGTTGTATTTG 248053 37 100.0 40 NNNNNNNNNN ..................................... CAACAACGTTAAAAAGTGGCAACCCATTTAGTTGTATTTG 248130 37 100.0 40 NNNNNNNNNN ..................................... GCCCGTCAAATACTCGGCTTAGCTTATCAAGTTGTATTTG 248207 37 100.0 40 NNNNNNNNNN ..................................... CCACTCGAAAAAGGTAGTATCGGACGAAGAGTTGTATTTG 248284 37 100.0 40 NNNNNNNNNN ..................................... AAGCTCAAAGCCTTTACAATGCTGCTATTAGTTGTATTTG 248361 37 100.0 40 NNNNNNNNNN ..................................... AGGGGATTTAATAATGACATACCACTAGGTGTTGTATTTG 248438 37 100.0 39 NNNNNNNNNN ..................................... CGATTGTTTTCTCGTCGCCTTTCACGAGTGTTGTATTTG 248514 37 100.0 40 NNNNNNNNNN ..................................... GGAAACATAAAACCTAAATTCATATCCTTTGTTGTATTTG 248591 37 100.0 40 NNNNNNNNNN ..................................... TGTCAGCCTTTCCGTATTTGTCCTTTGGCAGTTGTATTTG 248668 37 100.0 40 NNNNNNNNNN ..................................... TTCTATTTGGTCTGATAATTTAAATTATGGGTTGTATTTG 248745 37 100.0 40 NNNNNNNNNN ..................................... GGTTATTCTCTCGACCCTAATTGTCAGAATGTTGTATTTG 248822 37 100.0 40 NNNNNNNNNN ..................................... ATGCCGAAGATGTAAGTAATGGTAGTGCCAGTTGTATTTG 248899 37 100.0 40 NNNNNNNNNN ..................................... TAAAAATTTATATTGAAAAGATATGATAAAGTTGTATTTG 248976 37 100.0 40 NNNNNNNNNN ..................................... AAACAGTCTTTGAAAATCTTGTGAAAATGCGTTGTATTTG 249053 37 100.0 39 NNNNNNNNNN ..................................... GACTATGGTATCTTCGTTATCGTCTACTTGTTGTATTTA 249129 37 100.0 40 NNNNNNNNNN ..................................... AACCTCCGAGCACATTACGAAATGCCTACTGTTGTATTTA 249206 37 100.0 1 NNNNNNNNNN ...............C....C......A.TCACA.CT NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 39 37 39 CCAATGCAAAGATACTAATTTTAAAGCTAATCACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.27%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [132,133] Score: 0/0.18 # # Final direction: F [0.41,0 Confidence: MEDIUM] >NC_017866 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1511664 36 100.0 35 NNNNNNNNNN T.....................A.A........... GCCTCCTGATGGATCTCCACGACGTTGCTGGCCCT 1511735 36 100.0 35 NNNNNNNNNN T................................... GCCATCCCGACTGTGGCGGCGGCGTTCGGTGTCGC 1511806 36 100.0 36 NNNNNNNNNN .................................... GACAGTGCGAACACAGTGCAGTCGGTGACGATCGCG 1511878 36 100.0 36 NNNNNNNNNN .................................... TCGGTCTTCTTGAGCTGGTCGGTGAGTGTCTTGAGC 1511950 36 100.0 36 NNNNNNNNNN .................................... GCAACGCCTTCGTTCGCCTCGTGGACTATCGCGGCC 1512022 36 100.0 39 NNNNNNNNNN .................................... CAGGTTCTCGAGGATGCTCACTATTTCCGTGAGGATGAT 1512097 36 100.0 38 NNNNNNNNNN .................................... CTATACCCGTATGCAATGCTGTGCGCGTTGGATGCAAG 1512171 36 100.0 36 NNNNNNNNNN .................................... TGGCGCGAGCAGTATCACCACGTGGCTGCTCAACCG 1512243 36 100.0 36 NNNNNNNNNN .................................... AACGGTTCGATGGTTCGCACAGTGAGTTGTTCACTC 1512315 36 100.0 35 NNNNNNNNNN .................................... TTCGTCTCCTCCCTGCGCCGCTGATTGACCTGTTT 1512386 36 100.0 34 NNNNNNNNNN .................................... ATTTCAGGCGGCATCAGACCTTGCGGCTGGGATT 1512456 36 100.0 38 NNNNNNNNNN .................................... GCGTGTGGTGGAAAAACCAGCCCGTCACCGAAGCGGCC 1512530 36 100.0 34 NNNNNNNNNN .................................... TCGCAGGTGAATATCGGTGGCGGCGGCTTGTCGT 1512600 36 100.0 34 NNNNNNNNNN .................................... CGGATAGTATCCTGCGTCGCGTCTCCAATGGCGA 1512670 36 100.0 38 NNNNNNNNNN .................................... CTGACAGCATCCTCTCATTCCTCTCGAACGGCGAATAC 1512744 36 100.0 34 NNNNNNNNNN .................................... TGTTCGCTTTGATGCGTGTGATTGAGTTCGGCTT 1512814 36 100.0 39 NNNNNNNNNN .................................... TTCGGCGCGTGTTCCTCCGCCGTTGCCGTTGTGGTGGGC 1512889 36 100.0 35 NNNNNNNNNN .................................... GAGGTCATGGTGAAGTCGCGTTCGGTGCCGGTCTT 1512960 36 100.0 37 NNNNNNNNNN .................................... CCGCCTCCCACTCCGCCACGCTGAGCGCCATATCGTC 1513033 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 20 36 36 CCCTCAATGAAGCTCCGAAGCCGAGACTTCGGAGAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [10,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.30,-7.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [65.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [171,181] Score: 0/0.18 # # Final direction: R [0.64,0.78 Confidence: LOW] >NC_017867 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1511671 36 91.7 35 GGAGTACATT -.....................A.A........... GCCTCCTGATGGATCTCCACGACGTTGCTGGCCCT 1511742 36 97.2 35 TGCTGGCCCT T................................... GCCATCCCGACTGTGGCGGCGGCGTTCGGTGTCGC 1511813 36 100.0 36 TCGGTGTCGC .................................... GACAGTGCGAACACAGTGCAGTCGGTGACGATCGCG 1511885 36 100.0 36 GACGATCGCG .................................... TCGGTCTTCTTGAGCTGGTCGGTGAGTGTCTTGAGC 1511957 36 100.0 36 TGTCTTGAGC .................................... GCAACGCCTTCGTTCGCCTCGTGGACTATCGCGGCC 1512029 36 100.0 39 TATCGCGGCC .................................... CAGGTTCTCGAGGATGCTCACTATTTCCGTGAGGATGAT 1512104 36 100.0 38 TGAGGATGAT .................................... CTATACCCGTATGCAATGCTGTGCGCGTTGGATGCAAG 1512178 36 100.0 36 TGGATGCAAG .................................... TGGCGCGAGCAGTATCACCACGTGGCTGCTCAACCG 1512250 36 100.0 36 TGCTCAACCG .................................... AACGGTTCGATGGTTCGCACAGTGAGTTGTTCACTC 1512322 36 100.0 35 TTGTTCACTC .................................... TTCGTCTCCTCCCTGCGCCGCTGATTGACCTGTTT 1512393 36 100.0 35 TGACCTGTTT .................................... GTGATCCCACGTGACGAATCATGGGCCGAGGGATT 1512464 36 100.0 35 CCGAGGGATT .................................... GTCTCATCAGCGGCGCCACGGGTATCAATCTCAAT 1512535 36 100.0 36 CAATCTCAAT .................................... CCATTCCACCGTTTCGGCGTATTCGCACCACCAGTG 1512607 36 100.0 34 ACCACCAGTG .................................... ATTTCAGGCGGCATCAGACCTTGCGGCTGGGATT 1512677 36 100.0 38 GGCTGGGATT .................................... GCGTGTGGTGGAAAAACCAGCCCGTCACCGAAGCGGCC 1512751 36 100.0 34 CGAAGCGGCC .................................... TCGCAGGTGAATATCGGTGGCGGCGGCTTGTCGT 1512821 36 100.0 34 GGCTTGTCGT .................................... CGGATAGTATCCTGCGTCGCGTCTCCAATGGCGA 1512891 36 100.0 38 CCAATGGCGA .................................... CTGACAGCATCCTCTCATTCCTCTCGAACGGCGAATAC 1512965 36 100.0 35 CGGCGAATAC .................................... TGTTCGCTTTGATGCGTGTGATTGAGTTCGGACTT 1513036 36 100.0 39 GTTCGGACTT .................................... TTCGGCGCGTGTTCCTCCGCCGTTGCCGTTGTGGTGGGC 1513111 36 100.0 35 TGTGGTGGGC .................................... GAGGTCATGGTGAAGTCGCGTTCGGTGCCGGTCTT 1513182 36 100.0 37 TGCCGGTCTT .................................... CCGCCTCCCACTCCGCCACGCTGAGCGCCATATCGTC 1513255 36 100.0 CCATATCGTC .................................... AGTAGCCATA ========== ====== ====== ====== ========== ==================================== 23 36 36 CCCTCAATGAAGCTCCGAAGCCGAGACTTCGGAGAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [10,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.30,-7.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [31,180] Score: 0.18/0.18 # # Final direction: R [0.64,0.96 Confidence: LOW] >NC_017926 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 995729 23 95.7 37 TAATAAAACG ..C.................... ATTCACTAACAGCACTAACTTAAACTTCAATAACAGC 995789 23 100.0 34 CAATAACAGC ....................... CTTTAATAGCGCTCAATCCACTTTTAATAACAGC 995846 23 100.0 31 TAATAACAGC ....................... TTTTACTGACAACGCCAGCTTCAATAACGAT 995900 23 95.7 CAATAACGAT .C..................... CTTTAATGCAAGC ========== ====== ====== ====== ========== ======================= 4 23 34 AATTTCAATCAAGGGACTTATAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:73.91%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [854,6274] Score: 0.18/0.18 # # Final direction: R [0,4.68 Confidence: HIGH] >NC_017927 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1372852 36 100.0 30 CAGCTTGTTA .................................... ATGTACTTCGTTAATATTCAATTTTTAAGA 1372918 36 100.0 30 ATTTTTAAGA .................................... TTACGTGACCCATACATTGAATAGGTCAAT 1372984 36 100.0 30 ATAGGTCAAT .................................... GTTCTTATGCGTGTTATAAGCTGAAAGTTC 1373050 36 100.0 30 CTGAAAGTTC .................................... CTATTCTGCGTTAGATTTCAAAGTTACCAG 1373116 36 100.0 30 AAGTTACCAG .................................... AGCCAAGTTGTCTTTTTCGATACAGACCGT 1373182 36 100.0 30 TACAGACCGT .................................... ACATATCTAATGACATTCATGTCTGGGTTG 1373248 36 100.0 30 GTCTGGGTTG .................................... TCGGTTTTCGACTTCATAAGTTTCTTGTTC 1373314 36 100.0 30 TTTCTTGTTC .................................... CTTCAATTATTTATTTGTCGTCCAGTGCTT 1373380 36 100.0 30 TCCAGTGCTT .................................... CTTGTTACACACATGTATTTAGATGATTTT 1373446 36 100.0 30 AGATGATTTT .................................... CTGACCGTTAGGATTTCCATATGCGTCAGG 1373512 36 100.0 30 ATGCGTCAGG .................................... GAGACCTCAGCGTCACCAGAGACCCTAGCG 1373578 36 100.0 30 GACCCTAGCG .................................... TCCTTACCTGGCAAGCCATCATTTCCATCG 1373644 36 100.0 30 ATTTCCATCG .................................... CTGACTGTGAACGGTGTTCAGAAAAACACT 1373710 36 100.0 30 GAAAAACACT .................................... TTAGCGCAACCGTTAATTTGACAATTCATA 1373776 36 100.0 30 ACAATTCATA .................................... ATACGACAACCATTCAAGAGCATAAACTCG 1373842 36 100.0 30 CATAAACTCG .................................... GAGAAACTGAAGAACATTCCTGCTTTAAAT 1373908 36 100.0 30 TGCTTTAAAT .................................... TTCAATGTGGTATTATTAGGGTTTTCACCC 1373974 36 100.0 30 GTTTTCACCC .................................... TTTACAAGTGTCCATGAGTAATCGCTAGGA 1374040 36 100.0 30 ATCGCTAGGA .................................... TTATTTCCTTCAGCTTTACCTTCAGAGATA 1374106 36 100.0 30 TTCAGAGATA .................................... TCAGTTGAAAGGCCTTCTGGACCTTTAATA 1374172 36 100.0 30 ACCTTTAATA .................................... TTCCGCACTCTTGTAATTGTCGAACGGTTT 1374238 36 100.0 30 CGAACGGTTT .................................... TCACGACTAGTATATTCAGGTACACCGAAT 1374304 36 100.0 30 TACACCGAAT .................................... GTAGCAAGACTAAACACAACTGACGTATCT 1374370 36 100.0 31 TGACGTATCT .................................... CTCTGAGGACTGAGTAATGGACCAAGTGTTT 1374437 36 100.0 CCAAGTGTTT .................................... CTCGTAGGAT ========== ====== ====== ====== ========== ==================================== 25 36 30 GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-5.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [217,323] Score: 0/0.18 # # Final direction: R [0,0.37 Confidence: MEDIUM] >NC_017911 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================== ====== 738993 26 100.0 46 NNNNNNNNNN GAA............C..GT...... ACCAGTACCACCGCCAGTGCCGCCGCCAGTGCCGCCACCAGTACCA 739065 26 100.0 46 NNNNNNNNNN ...............C..GT...... ACCAGTACCACCGCCAGTGCCGCCGCCAGTGCCGCCACCAGTACCA 739137 26 100.0 34 NNNNNNNNNN ...............C..GT...... ACCAGTACCACCGCCAGTGCCGCCACCAGTACCA 739197 26 100.0 19 NNNNNNNNNN .....G..............A..... CGTGCCACCACCGGTTCCA 739242 26 100.0 19 NNNNNNNNNN .......................... CGTGCCACCACCGGTTCCA 739287 26 100.0 31 NNNNNNNNNN .......................... CGTGCCACCACCGGTTCCACCGCCAGTGCCA 739344 26 100.0 19 NNNNNNNNNN .......................... TGTGCCACCACCGGTCCCA 739389 26 100.0 1 NNNNNNNNNN .....T..A..............A.. NNNNNNNNNN ========== ====== ====== ====== ========== ========================== 8 26 30 CCGCCAGTGCCGCCGTCACCGCCGCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [2,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [33.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1500,470] Score: 0.18/0.18 # # Final direction: R [0.45,0.78 Confidence: LOW] >NC_017927 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 630165 36 100.0 30 NNNNNNNNNN .................................... GATAGCAATAGCTTTCTTGACCTAAAAGAC 630231 36 100.0 30 NNNNNNNNNN .................................... GAGGTCTGTAATTTCATTCCCTCGTAATCT 630297 36 100.0 29 NNNNNNNNNN .................................... AAAGGTTTCTCTAAACACATGCGGAATAT 630362 36 100.0 30 NNNNNNNNNN .................................... GTCATAGTACCAAGCACAAATAACGTTAGT 630428 36 100.0 30 NNNNNNNNNN .................................... GTGTATTTAGTAATGGTGATTTTTTAAATT 630494 36 100.0 30 NNNNNNNNNN .................................... CATTCATTTTTTATATATCAATAAAACTTT 630560 36 100.0 30 NNNNNNNNNN .................................... GGGGATTCTTATTTCACTGTAGTTACGATG 630626 36 100.0 30 NNNNNNNNNN .................................... CAAAAATTGATGTCACAATTAATAAAGGTG 630692 36 100.0 30 NNNNNNNNNN .................................... CTATTTCTGACAATGGTTGAAATTGTGTTC 630758 36 100.0 29 NNNNNNNNNN .................................... CTTTTTTTAAATTAATTTATCGTAAGCAA 630823 36 100.0 30 NNNNNNNNNN .................................... AACAAACTTATGAGAACGGTTGAACGGCTT 630889 36 100.0 30 NNNNNNNNNN .................................... AGCCCGCTTATTGCTTCAGTTGGTTTATAT 630955 36 100.0 30 NNNNNNNNNN .................................... TGGAGCAACAAGAATGATTAACTCTAATGC 631021 36 100.0 30 NNNNNNNNNN .................................... TTTGATGGATATCATTGATAAACTATACGA 631087 36 100.0 30 NNNNNNNNNN .................................... TAACGAAAGCAATACCAATCGTGCTAAAGC 631153 36 100.0 30 NNNNNNNNNN .................................... TATTCCTATGGTCGATATTCGAACAGTCAA 631219 36 100.0 30 NNNNNNNNNN .................................... CAGGGGACAAGGACTTTGACCCAACAGAAG 631285 36 100.0 30 NNNNNNNNNN .................................... AGAAACACCTAATGGTCTCTTAGAACCCGA 631351 36 100.0 30 NNNNNNNNNN .................................... AAGAAGTTAAAGACAACTTTGTTAAAGACT 631417 36 100.0 30 NNNNNNNNNN .................................... GAAAAAGCATCCATGATAGTGCTTAGACCT 631483 36 100.0 30 NNNNNNNNNN .................................... CGGAATGGTATAAAGAATACAAAGAAAACG 631549 36 100.0 29 NNNNNNNNNN .................................... CCAAGTATCACGCAAAGAAATCAACGAGA 631614 36 100.0 31 NNNNNNNNNN .................................... TTGACCTGTTTATCCTTGTTAACTAGAATAG 631681 36 100.0 30 NNNNNNNNNN .................................... AGAGCACTAGCATACTGTTTAGTCCGAACG 631747 36 100.0 30 NNNNNNNNNN .................................... AGGCAAGGTATTTGATCCAACAGAAGCCAA 631813 36 100.0 29 NNNNNNNNNN .................................... CATGATTTACAACCACGCGCTAGACCAAG 631878 36 100.0 30 NNNNNNNNNN .................................... ACCTAGAAGCATTTGAGCGTATATTGATTG 631944 36 100.0 30 NNNNNNNNNN .................................... AATTTTGCCCCTTCTTTGCCCCTTGACTAG 632010 36 100.0 30 NNNNNNNNNN .................................... TAATAGTTTACCAAATCGTCCTTGTTCCAA 632076 36 100.0 30 NNNNNNNNNN .................................... ACCATTAGCAATCATTTGTGCCCATTGAGT 632142 36 100.0 1 NNNNNNNNNN ..................................GT NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 31 36 29 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:69.44%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [65,43] Score: 0/0.18 # # Final direction: F [0.41,0.37 Confidence: LOW] >NC_017933 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3166686 29 100.0 32 NNNNNNNNNN G.AG....T..T...G...........G. ACCAGCACAGATTGCGCGGTTTTCTCAAGGTA 3166747 29 100.0 33 NNNNNNNNNN ....................A......G. GCTGGTTGCTGCAGCGTACCTGCTGCGAGCGTT 3166809 29 100.0 32 NNNNNNNNNN ............................. ACATCCGAACTGACACAGCTCATGCGCGGCGA 3166870 29 100.0 32 NNNNNNNNNN ................A..........G. TTCCAGATAACAACTTTCCAGTTTGTCTGCTT 3166931 29 100.0 32 NNNNNNNNNN ...........................G. GGTAAGCCCGTTAATCGCATCCACATCATGCC 3166992 29 100.0 32 NNNNNNNNNN .........T................... TTAACCTGCGCTGCTGTGATTGGCGTGATAGC 3167053 29 100.0 32 NNNNNNNNNN ............................. TGGGGGCCGCACCGGCACCACTCCATAGCACC 3167114 29 100.0 33 NNNNNNNNNN ........................G.ACA GAAATTTAAAGTTTGGCTGGATTCCGGTGCCAA 3167176 29 100.0 32 NNNNNNNNNN ............................. GTCCACCTCCCAATTTGAGTCGTTATAATTCG 3167237 29 100.0 32 NNNNNNNNNN A............................ GCGTTCTGCGGTCATTAACGTGCGCGCCACAT 3167298 29 100.0 32 NNNNNNNNNN ............................. CAAATCCCCTGGTCTCAGGGAGGGACCTGGCG 3167359 29 100.0 32 NNNNNNNNNN ............................. AAAGCCCGTCGTAAGACGGGTTTTGCTAACAA 3167420 29 100.0 32 NNNNNNNNNN ............................. GGTAAGTGGCAATTGCTCAGGTGAAAACGAGG 3167481 29 100.0 32 NNNNNNNNNN ............................. CTTATCTAAATCCACGAAACCGGCAATCGGTA 3167542 29 100.0 32 NNNNNNNNNN ............................. TAGCTTGCGGGTTGAACAAAGCTGCAAATATT 3167603 29 100.0 1 NNNNNNNNNN ...........................G. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 16 29 32 CGGTTTATCCCCGCTCGCGCGGGGAACAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [12-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [38.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [156,215] Score: 0/0.18 # # Final direction: R [0,1.42 Confidence: HIGH] >NC_017933 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3139749 29 100.0 32 CCGGTTACGT ............................. TCAGAAAGCTCGCGAACTGGTCATCCCGCAAT 3139810 29 100.0 32 ATCCCGCAAT ............................. CAGCCTCATAGCCGAGGCGGCGGATCGTGTCG 3139871 29 100.0 32 GATCGTGTCG ............................. TTGGCGCGTTTATTCCAGGACGCGTAGTCGCG 3139932 29 96.6 32 CGTAGTCGCG ................A............ TCATCCGCATCGAGTGAGCCGCCTGATGGCGG 3139993 29 96.6 32 CTGATGGCGG ................A............ GCCATTTCTTCGCTGGTATCGGCGTCTGGTCT 3140054 29 96.6 32 CGTCTGGTCT ................A............ TTTGACCCGTGCCTCCAGTTGATTTACACGTT 3140115 29 100.0 32 TTTACACGTT ............................. GACAATCTTCTGCACACGCTCATCGACAAAAG 3140176 29 100.0 32 TCGACAAAAG ............................. ATTGACCACATCCAGATCCGCAACGCGACCGT 3140237 29 100.0 ACGCGACCGT ............................. TCTAAAACTA ========== ====== ====== ====== ========== ============================= 9 29 32 CGGTTTATCCCCGCTCGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [107,98] Score: 0/0.18 # # Final direction: R [0,1.01 Confidence: HIGH] >NC_017933 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3166748 28 92.9 34 CTCAAGGTAC ...................A......G. GCTGGTTGCTGCAGCGTACCTGCTGCGAGCGTTC 3166810 28 100.0 33 GCGAGCGTTC ............................ ACATCCGAACTGACACAGCTCATGCGCGGCGAC 3166871 28 92.9 33 GCGCGGCGAC ...............A..........G. TTCCAGATAACAACTTTCCAGTTTGTCTGCTTC 3166932 28 96.4 33 TGTCTGCTTC ..........................G. GGTAAGCCCGTTAATCGCATCCACATCATGCCC 3166993 28 96.4 33 CATCATGCCC ........T................... TTAACCTGCGCTGCTGTGATTGGCGTGATAGCC 3167054 28 100.0 33 CGTGATAGCC ............................ TGGGGGCCGCACCGGCACCACTCCATAGCACCC 3167115 28 85.7 38 CATAGCACCC .......................----. AACAGAAATTTAAAGTTTGGCTGGATTCCGGTGCCAAC 3167181 28 100.0 33 CGGTGCCAAC ............................ GTCCACCTCCCAATTTGAGTCGTTATAATTCGA 3167242 28 100.0 33 TATAATTCGA ............................ GCGTTCTGCGGTCATTAACGTGCGCGCCACATC 3167303 28 100.0 33 GCGCCACATC ............................ CAAATCCCCTGGTCTCAGGGAGGGACCTGGCGC 3167364 28 100.0 33 GACCTGGCGC ............................ AAAGCCCGTCGTAAGACGGGTTTTGCTAACAAC 3167425 28 100.0 33 TGCTAACAAC ............................ GGTAAGTGGCAATTGCTCAGGTGAAAACGAGGC 3167486 28 100.0 33 AAAACGAGGC ............................ CTTATCTAAATCCACGAAACCGGCAATCGGTAC 3167547 28 100.0 33 CAATCGGTAC ............................ TAGCTTGCGGGTTGAACAAAGCTGCAAATATTC 3167608 28 96.4 GCAAATATTC ..........................G. ACTAACGGT ========== ====== ====== ====== ========== ============================ 15 28 33 GGTTTATCCCCGCTCGCGCGGGGAACAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [35,211] Score: 0.18/0.18 # # Final direction: R [0,1.6 Confidence: HIGH] >NC_017934 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 1713233 31 100.0 36 TCTTTGAAAT ............................... ACCCCCCCTCATACCTTGACATCATGCTAATTACAT 1713300 31 100.0 34 CTAATTACAT ............................... AGATGAAATGATAGACGGATTGCTGCCACTTAGC 1713365 31 96.8 36 GCCACTTAGC ..............................G ATACCCATGTGTGCGGTACCACATTGATAGGCCCGT 1713432 31 100.0 ATAGGCCCGT ............................... CGCATGCAAG ========== ====== ====== ====== ========== =============================== 4 31 35 GTTTCCATACCACTATGGTTCTTACGCAACA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.06%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.00,-2.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [63.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [1119,621] Score: 0/0.18 # # Final direction: F [0.68,0 Confidence: HIGH] >NC_017934 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1714716 30 96.7 38 ATGGCCTTGT ......................C....... AGGATTTACTGATCGAGACGGCAAATCTTAAATTGTGG 1714784 30 100.0 37 TAAATTGTGG .............................. TGGCGTTGCTCCATCTGAATTATTTGGGCCTGAAGAA 1714851 30 100.0 38 GCCTGAAGAA .............................. CAGATGGAAGAGACAACTATGACTATTAAAAAATTGCA 1714919 30 100.0 38 AAAAATTGCA .............................. AAAACTTGTTTAGTGCCATTATAGCAAGAGCATTGCAA 1714987 30 100.0 39 AGCATTGCAA .............................. GAGTTTTCGTTTCGATAAGTGGAAAAACAGAGCCAGTTT 1715056 30 100.0 35 GAGCCAGTTT .............................. TGGAACGTAATTGTAAAGTCACAACAGATCAAGCA 1715121 30 100.0 38 AGATCAAGCA .............................. CTGCAGGGCGCTTTCTTATTCATATATATGCATATACA 1715189 30 100.0 41 TGCATATACA .............................. GTATCCTAAGTATCGACTTCTGATGGAAAGGTTACAGAAAT 1715260 30 100.0 35 TTACAGAAAT .............................. GTAATGAATTTTTCGATGCCGTGAAGTCTTAAAGT 1715325 30 100.0 35 GTCTTAAAGT .............................. GCCCTGCTTCCCTGAAATTCAATTGGGAAAAAGAA 1715390 30 100.0 40 GGAAAAAGAA .............................. AAGGAAGGTTGGCTCTAGCGTATATGTACAGTATGCACGC 1715460 30 100.0 37 GTATGCACGC .............................. CATGCATCACAAAAATTTGTGCGCCAACACGTAAAAC 1715527 30 100.0 39 CACGTAAAAC .............................. CATTCATGTTGGCGTTTGCGGTATCATACGCCGCGGGAT 1715596 30 100.0 36 GCCGCGGGAT .............................. ATAAATCATAAGTATAAAAAACGATGAATGGAAAAT 1715662 30 100.0 37 AATGGAAAAT .............................. CATGCATCACAAAAATTTGTGCGCCAACACGTAAAAC 1715729 30 100.0 39 CACGTAAAAC .............................. CATTCATGTTGGCGTTTGCGGTATCATACGCCGCGGGAT 1715798 30 100.0 38 GCCGCGGGAT .............................. TACATACCTGTTGGCCATCGCAGAAGCCATTGATACAC 1715866 30 100.0 36 ATTGATACAC .............................. ATAAATCATAAGTATAAAAAACGATGAATGGAAAAT 1715932 30 100.0 37 AATGGAAAAT .............................. CATGCATCACAAAAATTTGTGCGCCAACACGTAAAAC 1715999 30 96.7 37 CACGTAAAAC ......................C....... AAAAAGGAAGTCTCACGGCTGGAATTGGCGAAACGAA 1716066 30 100.0 38 GCGAAACGAA .............................. GAGAAGGACTTCGAGATAATCGTGGCTAAGAATAGAAA 1716134 30 100.0 39 AGAATAGAAA .............................. AAAGTACACTCAAAGGCACTACTTTGCCCTGCTTTTACA 1716203 30 100.0 36 TGCTTTTACA .............................. CAATTGCTCTGCTAAGGTAGTAAGGGCCAAGTTAAT 1716269 30 100.0 39 CCAAGTTAAT .............................. TAACTGCGGGGAGAGTATAAACGCTCGCTATGAACCCGC 1716338 30 100.0 38 ATGAACCCGC .............................. ACAGCGATACTTTTCGAAAGCTATCAGCTGTATTCTGT 1716406 30 100.0 38 TGTATTCTGT .............................. GGTCGTCCAATGATGGGAGAAAGGAATTCCTTAAGTTT 1716474 30 100.0 36 CCTTAAGTTT .............................. ACTTTATTTGTCGGATATATCTTAGTGGATTGAATT 1716540 30 100.0 36 GGATTGAATT .............................. GCGGTTTAGAATTTCGTAACAATAGGGGGTGCGTGA 1716606 30 100.0 38 GGGTGCGTGA .............................. GTCTATGAATGGCTAATGGATAATGTAAGATCAAACGG 1716674 30 100.0 37 GATCAAACGG .............................. CAGACTATCGCGAAAGAGATCGGGAAGGGAATGAGTC 1716741 30 100.0 38 GGAATGAGTC .............................. ATGATCGAGAAGCAATACGATTCGTGGCGAGGTCTCGG 1716809 30 100.0 36 GAGGTCTCGG .............................. CTAATCAATGGTTCAGACGAAGAAATGACACTCCCC 1716875 30 100.0 38 GACACTCCCC .............................. GGCAAGAAAAGAACACACTTGCCAAGAATGTGGAGCAA 1716943 30 100.0 35 TGTGGAGCAA .............................. TGAGAGACGAGAATGGTCACATCGTCGGCGTGAAA 1717008 30 100.0 37 CGGCGTGAAA .............................. TCGCCCGGGAGTACGGCCTCAAACTCGAAGGACTGTT 1717075 30 100.0 37 AAGGACTGTT .............................. CCAATGTTCACAGAGAACAAGGGTTCATATGCTCAAA 1717142 30 100.0 37 TATGCTCAAA .............................. TCACTTCGAGAGCTCATCCGTACCCAACTTCAAGAAC 1717209 30 100.0 37 CTTCAAGAAC .............................. GAAGAGTACGCGTCCCCGGTAGTGGCCTTCTCGATTC 1717276 30 100.0 36 TTCTCGATTC .............................. AAGGTCAAAGACGGGATTCTCGACGCTCTCTCGATC 1717342 30 100.0 37 TCTCTCGATC .............................. ATGCAGACACGGCCAACACGGTGATAGGTATTCTCAA 1717409 30 100.0 38 GTATTCTCAA .............................. GGAATATAGCGGAAAGTGGAAAACAGAAAGTATTGGTT 1717477 30 100.0 38 AGTATTGGTT .............................. AAAAACAAATGATTGACAAACCTAAAAGGAGGTTGGTA 1717545 30 100.0 38 GAGGTTGGTA .............................. TATGAAGTGTATAGGAGTAGTAGAATCAGGTCACAGCT 1717613 30 100.0 35 GGTCACAGCT .............................. TCACCTACCACCCGGACAACTCCATTTTCCCAACT 1717678 30 100.0 TTTCCCAACT .............................. CGCTTTTATT ========== ====== ====== ====== ========== ============================== 45 30 37 GTTTCCATACCACTATGGTTCTTACGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.00,-2.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [51.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [408,749] Score: 0/0.18 # # Final direction: R [0,0.68 Confidence: HIGH] >NC_017941 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1229454 30 100.0 36 ATTGGGCATG .............................. TCCCGAGGAGTCGTCCGCGTCGACGCGGATGAGTTG 1229520 30 100.0 35 GGATGAGTTG .............................. GTGCATCGCCGAGCGGTCGTTCGGGTCCATCTTGT 1229585 30 100.0 34 TCCATCTTGT .............................. TGATGATGGGTCCATCACCACCCACCCCCTGCGT 1229649 30 100.0 35 CCCCCTGCGT .............................. AAGAACCATTGACTGGAACGCAACGACGCATCCTC 1229714 30 100.0 37 ACGCATCCTC .............................. TGGGGATGTCTCGGACAATCTCTGACCGTGTGATAAA 1229781 30 100.0 37 GTGTGATAAA .............................. TGACTGGAGAGCGTGCAACGGCCTATAAGATAGACCT 1229848 30 100.0 35 AGATAGACCT .............................. TCAACTGTCCCCTTGTCCGCTTCGTCGCCTGAGCG 1229913 30 100.0 36 CGCCTGAGCG .............................. GTACTTCTCTCCATCTTCGAGATTAGTGACGTTCAG 1229979 30 100.0 36 TGACGTTCAG .............................. GTACTAAAGTGTGGCACGGAAAACACGAACAGCCCT 1230045 30 100.0 34 GAACAGCCCT .............................. CCATCGTGGGTTGATTCGATACTCGACCGCAACG 1230109 30 100.0 35 GACCGCAACG .............................. TCGACTTGCGAGATAATGTCGTCTTGCTCGGTGGT 1230174 30 100.0 35 GCTCGGTGGT .............................. AAATATGATACCACCGAACCCGTTTGTAGCGCCCA 1230239 30 100.0 37 GTAGCGCCCA .............................. GTTGGTGCCCGCGCGGTTGGCGTAGGCAAGGTTCGTG 1230306 30 100.0 36 AAGGTTCGTG .............................. TGAGGTCTTCCCTAACTTCTGCATTGGTGTGTCCCG 1230372 30 100.0 37 GTGTGTCCCG .............................. AAACTCCTCGGCGTCGACACCGAGCGCACGATCGACG 1230439 30 100.0 38 ACGATCGACG .............................. CGTTTCCTCATCGAGGACTATTAAATCTCCTGACGAAT 1230507 30 100.0 CCTGACGAAT .............................. TTGCATCTCTTCCAGACTCTCCTCTATGCTCCG ========== ====== ====== ====== ========== ============================== 17 30 35 GTTACAGACGAACCCTAGTTGGGTTGAAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,7] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 90% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [189,476] Score: 0.18/0.18 # # Final direction: F [1.24,0.18 Confidence: HIGH] >NC_017941 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1259098 30 100.0 34 ATCGGGCATG .............................. GAACAGGATGGCGAACGCGGTGTCTGCGCCAGTT 1259162 30 100.0 35 TGCGCCAGTT .............................. CACGACAATCAAGTCTGGTTGCATGGCGACACGGA 1259227 30 100.0 37 GCGACACGGA .............................. CTGTGGCCTCCAGCGGCCGTCAGACAGTCGCATCCGA 1259294 30 100.0 36 TCGCATCCGA .............................. AAGAAGCCGCTCGCCGTCCTCGATGACGGGCGGGCG 1259360 30 100.0 36 CGGGCGGGCG .............................. GACAAGACTCGCGACGAAGCCGAGTCGAAACGCCGC 1259426 30 100.0 36 GAAACGCCGC .............................. CTCTTTATCCCTCCTGCCCGAATGTCTACGAATATC 1259492 30 100.0 36 TACGAATATC .............................. GAACCCACTGGTGAAGAAAAAGTTGTAGAGACCCTA 1259558 30 100.0 37 AGAGACCCTA .............................. ACGACAATCAAGTCTGGTTACATGGCGACACGGATGG 1259625 30 100.0 36 ACACGGATGG .............................. TTCCACAACGTCGGGGAGGGCGAAATTAGCCAAGCA 1259691 30 100.0 35 TAGCCAAGCA .............................. TCCCGCTGGGGATGTCGGGAGTGCCGGGCGAGCCA 1259756 30 100.0 34 GGGCGAGCCA .............................. CCCGGCCCGTTGCCCCCCACGGCAATCGTCTGCT 1259820 30 100.0 34 ATCGTCTGCT .............................. CGTCTGTGTTATTCTGTGCGTCTGCCGCGACAAC 1259884 30 100.0 35 CCGCGACAAC .............................. ATTGCCTGTCCCCGTCGTGTAATCAACTCGGAATC 1259949 30 100.0 35 ACTCGGAATC .............................. GAGATGTGCGACCGCGGCGAAATGAGCAGTTCGTG 1260014 30 100.0 37 GCAGTTCGTG .............................. GCGACATGGGGACCGTCGAGAACGCGCTCTATGGGGA 1260081 30 100.0 37 TCTATGGGGA .............................. CGAGGGTCCCGGTGTCGAGAGGACCGGGACGGACGGA 1260148 30 100.0 38 GACGGACGGA .............................. TCGGTAATCTGGGAGGCGTCAGTCTCGGCCGAGTAATC 1260216 30 100.0 36 CCGAGTAATC .............................. CTCGCCATCGCCGCGAACTCGGTCCTCCTCGGGGTG 1260282 30 100.0 35 CCTCGGGGTG .............................. AAGCCTTGAGAGTGTCTGTTGGTATGATGAATGTT 1260347 30 100.0 34 GATGAATGTT .............................. AAGTAGACCGCGCTCAGTTACGACAGCTGCTCGA 1260411 30 100.0 AGCTGCTCGA .............................. ACGATGATCT ========== ====== ====== ====== ========== ============================== 21 30 35 GTTACAGACGAACCCTAGTTGGGTTGAAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,7] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 90% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [46.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1015,57] Score: 0.18/0.18 # # Final direction: F [1.42,0.27 Confidence: HIGH] >NC_017934 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1738079 30 100.0 38 ACTTCTGCTG .............................. GTTTGGAGAGCAAACATTCATAAGGTTGAGAATCTCCT 1738147 30 100.0 38 AGAATCTCCT .............................. TCACTACAAGAAATGGTTAAAGTATTGTGATCTACCAA 1738215 30 100.0 38 GATCTACCAA .............................. TCCAGAGCTGCAAACGAAAATGTAAGCAGAATAATCTC 1738283 30 96.7 GAATAATCTC ......................C....... CCGCACGGCG ========== ====== ====== ====== ========== ============================== 4 30 38 GTTTCCATACCACTATGGTTCTTACGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.00,-2.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2776,325] Score: 0.18/0.18 # # Final direction: F [0.86,0 Confidence: HIGH] >NC_017941 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2483675 30 100.0 47 TCGACCCAGA .............................. CTGTTGCTCTTGAATGTAACATGACGACGAAATTCACTGGCGCGCCC 2483752 30 100.0 36 TGGCGCGCCC .............................. GGTGCTGTCGATGGTGATAGACTCGTCCCCGTCCAC 2483818 30 100.0 35 CCCCGTCCAC .............................. TCGTCGTCGGGCGTGGGTTCGACTACGATTTCCGC 2483883 30 100.0 34 CGATTTCCGC .............................. AGATTTTCAAGCGCGAGTTCGGTATTTGACTGCT 2483947 30 100.0 35 TTTGACTGCT .............................. CCGGGGTTTACGACGTGAAGAAGGTGCGTCCAGAA 2484012 30 100.0 34 GCGTCCAGAA .............................. GCCCTGGTCGTCGACCGGCCCGAAGACTGTCACG 2484076 30 100.0 36 GACTGTCACG .............................. CTGCGACCCTCCGGAATTGGGGTCTGCCCCAACGTA 2484142 30 100.0 34 CCCCAACGTA .............................. AAGCGTTGTAGAACAACATGGCCAGCTTCCAGAC 2484206 30 100.0 38 GCTTCCAGAC .............................. TCTCACAACCCCCCCAAATCCTTCCCCCCATGCCGTGT 2484274 30 100.0 37 CATGCCGTGT .............................. ACCTCTGGATAAATCTCCCCAATCTGCCGGAGGACCG 2484341 30 100.0 36 CGGAGGACCG .............................. GATATGCGTTCCGGTCGGGCAACATTTCGAGACCGT 2484407 30 100.0 37 TCGAGACCGT .............................. AATTTCACATGGATTTCATGGATTGTCCCCTCGTCAA 2484474 30 100.0 35 CCCTCGTCAA .............................. ACGTCATGCATGCAACGCCGATTGTTGCATTCGCG 2484539 30 100.0 38 TGCATTCGCG .............................. ACGCGAAGGCCGGGTCTGCGGAGTACATGGGTCTGGTC 2484607 30 100.0 38 GGGTCTGGTC .............................. GACGCTCGAAGCCGGCGCGCTCGTCCTCGCCGACAAAG 2484675 30 100.0 35 GCCGACAAAG .............................. TAGATGGTTCATACGTTACTCCCTCAATAATCTTC 2484740 30 100.0 36 AATAATCTTC .............................. GTCCAAATCGGGCAGGTGTACGACCTTCGCGTCGAA 2484806 30 100.0 37 TCGCGTCGAA .............................. CGGCGGGCCGTCGGGTCTGCGACACCTCCCACTCCCC 2484873 30 100.0 35 CCCACTCCCC .............................. CCGACGTTAGATTTTGTGACTCGTTTTGTACCTCC 2484938 30 100.0 36 TTGTACCTCC .............................. ATTTAGCAGAGTCAGTCATTCCGAACCACCGTCCGC 2485004 30 100.0 36 CACCGTCCGC .............................. TGTCGAAGGCGACTACGTCTTAGCCGTCCATCCGTG 2485070 30 100.0 36 TCCATCCGTG .............................. ACCATCGACGGCACGGTCGTGGGCGACCTCGTACAC 2485136 30 100.0 CCTCGTACAC .............................. CGACTGTCGC ========== ====== ====== ====== ========== ============================== 23 30 36 GCTTCAACCCAACTAGGGTTCGTCTGTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [7,8] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 90% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [958,117] Score: 0.18/0.18 # # Final direction: R [0.18,1.24 Confidence: HIGH] >NC_017934 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1738703 30 96.7 38 GCGGCTCAAT ......................T....... CTACAGCGGGAAGTCGCTTCTATTGCAGCACAAGACAC 1738771 30 96.7 35 CACAAGACAC ......................T....... TATCCCATCTTTCAGGCGAAGCATACCTATTTTCA 1738836 30 100.0 36 CCTATTTTCA .............................. TTCTTTTTGCTTATTATGTGTATGGATTCGTTACTT 1738902 30 100.0 38 TTCGTTACTT .............................. CTAAGCGTTCCGCACCGTTTTTTCTTCCATGCTTAACA 1738970 30 100.0 34 ATGCTTAACA .............................. GGTGTAGATTGGTCGCTTCCTGCGGTATCGTCAA 1739034 30 100.0 GTATCGTCAA .............................. TGAGATTGAT ========== ====== ====== ====== ========== ============================== 6 30 36 GTTTCCATACCACTATGGTTCTCACGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.00,-2.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [326,656] Score: 0.18/0.18 # # Final direction: R [0,0.18 Confidence: MEDIUM] >NC_017934 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2471531 30 100.0 38 TTAGACGGTA .............................. CTTACCGTGCCCGAAGCAAAGAGGATTGCAAAAGCTCA 2471599 30 100.0 34 CAAAAGCTCA .............................. TTGCTGCCATGACAATCGGAGGTATCAGTGCTGA 2471663 30 100.0 38 TCAGTGCTGA .............................. CTTACCGTGCCCGAAGCAAAGAGGATTGCAAAAGCTCA 2471731 30 100.0 36 CAAAAGCTCA .............................. CGGCCCTCACGCAAGACGCCCTTATGGCGATATCCG 2471797 30 100.0 38 GCGATATCCG .............................. CCGCAAACACAAGATATTTCATTAGCACAATAGAAAGA 2471865 30 100.0 36 AATAGAAAGA .............................. TACACGTAACGCAAACACCCCCGATGTAACGCCGTG 2471931 30 100.0 35 TAACGCCGTG .............................. ATAAACTTTATTGGCCTCTCCGTTTGCGCCCTTGA 2471996 30 100.0 36 GCGCCCTTGA .............................. GTAAGTAGAACCTTAGCACCGTCAACGTCTATAACA 2472062 30 100.0 37 GTCTATAACA .............................. TTTAGACGGCGTCACTTCTAGCTTCGTCTCTTTCTGA 2472129 30 100.0 36 CTCTTTCTGA .............................. TCTAGCCGCCCATAAGGGCGGTTAGCTTTGGAGGCA 2472195 30 100.0 35 TTTGGAGGCA .............................. ATGTGTGTTTACTCTAAAGGCCTAAGGCGAGAGGT 2472260 30 100.0 35 GGCGAGAGGT .............................. AAAAAACGAAATTCAACCCACGAATTTTCGGACGC 2472325 30 100.0 36 TTTCGGACGC .............................. AAACCTCCGAAGTTTCTGAAGAACCAGAGGTGAAGC 2472391 30 100.0 38 GAGGTGAAGC .............................. GATTATTCGGAGAACTGGTTCGAGATAGATGCTTACGC 2472459 30 100.0 34 ATGCTTACGC .............................. GTGTTTAAGGTTTTTGACTGGCAGACGAAGCAAA 2472523 30 100.0 35 ACGAAGCAAA .............................. GAGAAATCCGGATTCTCACCGCATGGAGATTCACA 2472588 30 100.0 36 GAGATTCACA .............................. TCGGTCCTATGTGCATATCCCCTAACGCCATATCAG 2472654 30 100.0 34 GCCATATCAG .............................. CCTCCCCACTTGCTTGAAGAAACATGCCTCCATC 2472718 30 100.0 34 TGCCTCCATC .............................. CGAAGGTGTCACATCGAGCTTCGTCTCTTTCTGA 2472782 30 100.0 39 CTCTTTCTGA .............................. CTGAAGGGCAGTTCGAGAGAAAACTCGCCTGTGAAGGGA 2472851 30 100.0 34 TGTGAAGGGA .............................. CTGGTAATGCCTATGAACATTAGAAGCGCTCCAA 2472915 30 100.0 36 AGCGCTCCAA .............................. ACCATCATCTGGCCCATATGAGGTATTCTCGCTTAC 2472981 30 100.0 36 TCTCGCTTAC .............................. ACTGAAACCCCCCAATCTTTTCGTTGAGGTGAGAGA 2473047 30 100.0 35 AGGTGAGAGA .............................. CGGCCTCAAACTCTACATCTGCAAAAGCATCTACA 2473112 30 100.0 38 AGCATCTACA .............................. AGTCGATTCTGTAATAGATTCTCTTCGAAGCACCGTCA 2473180 30 100.0 35 AGCACCGTCA .............................. TGCGGTTTGCATATAATGCTGATACTCGTGTCGGA 2473245 30 100.0 35 TCGTGTCGGA .............................. AGCATTGTATTGATATGATTCCACAGAACCAATAG 2473310 30 100.0 37 GAACCAATAG .............................. GCCGAGGGCGAGGCTCAATATGAACCCTCAATTCTGA 2473377 30 100.0 38 TCAATTCTGA .............................. TGGTGATTTTAGAAGCGGGTTAGAGGTTGTTGGCGGAG 2473445 30 100.0 36 GTTGGCGGAG .............................. GAAAAGGCTGGTGGAGTGGGCCTATGAGAAAGAAAA 2473511 30 100.0 35 AGAAAGAAAA .............................. CTTTACCACAGACTCAACAAACATAGAGATTCCTT 2473576 30 100.0 35 GAGATTCCTT .............................. GGTACTACCCTCGTCAACCTGTTAGGTTCATACGG 2473641 30 100.0 34 GTTCATACGG .............................. GATTATCTTCGATTCAAAGATGTTGACTACATCA 2473705 30 100.0 35 GACTACATCA .............................. AAGGCTCTCTTCGGAGAGCCTTTCTTTATTTGGAG 2473770 30 100.0 34 TTATTTGGAG .............................. TAAATGGTTAAGTACGTGATAGTGGTAAAAGACA 2473834 30 100.0 36 GTAAAAGACA .............................. GCGAAAAGATGTTGAAACCCTTTTCATCGCACAAGA 2473900 30 100.0 35 TCGCACAAGA .............................. GGCTTCGGGCTTCCATCTCTGAATAGTCCTCTCGG 2473965 30 100.0 34 GTCCTCTCGG .............................. TTCAATAGACTGTTGACGAGATCCCCGATGAGAC 2474029 30 100.0 43 CCGATGAGAC .............................. CGCTGAGCCTCCTAAGGAAGAGGTGGTGAAGGATGAGAAGATA 2474102 30 100.0 38 TGAGAAGATA .............................. TGAAAAGCACTGGCCTAAAGTGAAGAGATACAGAGACA 2474170 30 100.0 34 TACAGAGACA .............................. GGGATCTCTCAGCTCCGCTTCCTTGAAGACAGGC 2474234 30 100.0 37 GAAGACAGGC .............................. CAAAAAGGTGTTGGCAATCACCCGTGCCCAAAACCAT 2474301 30 100.0 35 CCAAAACCAT .............................. ACGAAAGATATTGATGTTGTCAGGCCGTGGAAGGT 2474366 30 100.0 36 CGTGGAAGGT .............................. CGAGCCACCGTTCATATTCTGTGTGACTTTCTCTTT 2474432 30 100.0 34 CTTTCTCTTT .............................. TACATGATGGAACTTGACGAAAAGTATTGCGATG 2474496 30 100.0 39 TATTGCGATG .............................. CGGAATCGTGGAGGAAGGAAAGAAACAGTACAAGCTCAA 2474565 30 100.0 35 ACAAGCTCAA .............................. GGTCCCTGAGCTGACTCTGTAATTGCGAGAAAGTG 2474630 30 100.0 37 CGAGAAAGTG .............................. CGAATGTGGGTCGATGGCATATTTGCCGATCTTGAAG 2474697 30 100.0 35 GATCTTGAAG .............................. GCGAGAACGAGAAGCAATATCCACAACGTGAAAAG 2474762 30 100.0 34 ACGTGAAAAG .............................. CAGTTCAAGTTTGTGGTTCACTCGACTTCTTCTA 2474826 30 100.0 38 ACTTCTTCTA .............................. CAAAATGACCCAAAACCCGAATTGGTTGCAAGTGCAGA 2474894 30 100.0 35 CAAGTGCAGA .............................. CATTGCGAAGCAGAGAAACGGCTCGACAGGCTCGA 2474959 30 100.0 35 ACAGGCTCGA .............................. CAGATGATCGAGCAGGCAGATCTCTTGATTCTTGA 2475024 30 100.0 37 TGATTCTTGA .............................. GGTCAGAAAGGCGCTGCCTCTGGCATTGAAACTTTGG 2475091 30 100.0 36 GAAACTTTGG .............................. GTTCATCCGTGCCCAACTTCAAGAACTGGGGACGTA 2475157 30 100.0 35 TGGGGACGTA .............................. TCCTCTTGACGAAAACAGGCACACTCTTTATCAGA 2475222 30 100.0 36 CTTTATCAGA .............................. GTAGTGCCACCATCTAATGTAAGGAAAGTCAACACA 2475288 30 100.0 36 AGTCAACACA .............................. GGACGACTCAGTTTCATCCCCTGCCTAGGTTAGGTA 2475354 30 100.0 35 AGGTTAGGTA .............................. GGTTCTTCTGGAAATATGAAGCAGAGGATCTGGCA 2475419 30 100.0 35 GGATCTGGCA .............................. AAGGTATTCAAACCACAGCCTCATAGAACGAAAGA 2475484 30 100.0 35 GAACGAAAGA .............................. GATAGAGGTCGAATTTGACGAGACCTGGTCGAACA 2475549 30 100.0 36 TGGTCGAACA .............................. ACGGCTTCGGTGGTGGCAGAAAAAGCGGTAGTGCCG 2475615 30 100.0 34 GGTAGTGCCG .............................. GCCGTATCTGGTGGATATTACCATTCTTTAGGAA 2475679 30 100.0 35 TCTTTAGGAA .............................. CAAAGAGTTAGAAATAGGCTTCAATCCTGATTATC 2475744 30 100.0 35 CCTGATTATC .............................. TCCATTCCCACGTTTTGAGTCTATTCAACGTTCAC 2475809 30 100.0 37 CAACGTTCAC .............................. CAAGTACAAGTGCTCTATATAGTATATTCCCATATTG 2475876 30 100.0 35 TCCCATATTG .............................. ACCGTTAGCAATTCAAGCAACGGCTCTATTTTCTC 2475941 30 100.0 36 CTATTTTCTC .............................. GATTAGCAGCTTTGCGCTTTGAAGGCATTGACGGTG 2476007 30 100.0 35 ATTGACGGTG .............................. ATGCACTTCATAGCCTTTTCTGAGACGATATACCG 2476072 30 100.0 39 CGATATACCG .............................. TTGATATAGTGTTTATCCTATTCCTGCTCGGTTATCCGC 2476141 30 100.0 37 GGTTATCCGC .............................. TAGCGTAATTTTCTGTGCGCCCTCACTCGCCAAAGTG 2476208 30 100.0 35 CGCCAAAGTG .............................. AGCTGTATCTTCTGGATATTACCATTCTCTAGCAA 2476273 30 100.0 35 TCTCTAGCAA .............................. GGGAATGAACCTCACAGTCTTTGACGAGTGGTCTA 2476338 30 100.0 35 GAGTGGTCTA .............................. ATACCGACTGCAGGTGGTTCGACGAACATGAGCGG 2476403 30 100.0 36 ACATGAGCGG .............................. CGGTCTCAAGCTCGTCTTCGCCAATCTCGAAGTCGA 2476469 30 100.0 TCGAAGTCGA .............................. CCATTACTAT ========== ====== ====== ====== ========== ============================== 76 30 35 GTTTCAATTCCTCATAGGTAGTCTGGAAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [60.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [243,176] Score: 0/0.18 # # Final direction: R [0,5.14 Confidence: HIGH] >NC_017946 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 154588 30 100.0 43 NNNNNNNNNN .............................. CAAGAGGATCCAGAAGCCAGCTGATGAGCGTCTCTGGGTTCCA 154661 30 100.0 36 NNNNNNNNNN .............................. GGGGCTGTTAAAAGGGCTGAAAAAGAGGCTATGGGG 154727 30 100.0 37 NNNNNNNNNN .............................. ATTCGCCAGAAAAGCCGAAGAAGAACTCAAAACCTTC 154794 30 100.0 37 NNNNNNNNNN .............................. CTCTTAAACTGACTTATTATCTCAGATTTGGCTCCAG 154861 30 100.0 39 NNNNNNNNNN .............................. TATTTTCAACAAATAAGACATAGAAAGCAAGAGCTTTAT 154930 30 100.0 37 NNNNNNNNNN .............................. GAACTGTGCTGGCTCGGAGAGCTTCTTGCGGCCGGCG 154997 30 100.0 37 NNNNNNNNNN .............................. TGGGCTCGATTTCATCCCATGGGGGCTACTGATAATC 155064 30 100.0 37 NNNNNNNNNN .............................. AGGGCTGTTCGTAGACTACTGGACGGGCCGCCTTTGC 155131 30 100.0 38 NNNNNNNNNN .............................. AACTTCTTACACATTTCATCAAATTCAGCAAATTTTGA 155199 30 100.0 36 NNNNNNNNNN ...............A..A........... GTGGAATCCTATCAATTTTCGTTCGCGGAGGCTCTA 155265 30 100.0 38 NNNNNNNNNN ...............A..A........... TCATAGATAAGGGATTCTCCCTCATGGTATCTTGTCAT 155333 30 100.0 38 NNNNNNNNNN ...............A..A........... CTCTTCCTTACCAGTCTGTCTGTCCTTGTAGACCGCCC 155401 30 100.0 38 NNNNNNNNNN ...............A..A.AG.A.TG..A GCCAGGTGTTGGAGGAGATGGGGAGGGCTTCTTTAGGG 155469 30 100.0 37 NNNNNNNNNN ...............A..A........... TCAAGTTGCTACCCAAGTCTTGTATCACTCCAAGACC 155536 30 100.0 37 NNNNNNNNNN ...............A..A........... GAGTTACTCTCAGTGTCCTGGACATCCACTGCAATCA 155603 30 100.0 37 NNNNNNNNNN .............................. TCCCACTTGGGTGGACACTTGGAGGCAAAACGGTAAA 155670 30 100.0 49 NNNNNNNNNN .............................. TTGGAACGAACACAGCAACGCTAATCTCAGTGCCCTTACTGACATCACT 155749 30 100.0 37 NNNNNNNNNN .............................. AGGCCCTGAGCCTTACGAACTGCTTGCCATTAACCTC 155816 30 100.0 36 NNNNNNNNNN ...........G...A..A........... ATACAGACTAATAGCCGACGTGGGCGACGGGCTGTT 155882 30 100.0 39 NNNNNNNNNN ...............A..A........... AACATCGTTCACTCTCACCTTCTTGTTAAACTCCTCGTC 155951 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 21 30 38 GTTCCAATAAGACTATAAGAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [792,20] Score: 0.18/0.18 # # Final direction: F [5.86,0 Confidence: HIGH] >NC_017934 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1739853 30 100.0 36 CGGCAAATAT .............................. CTATCAGCTGTATTCTATAGAAGACGTCAGTATTGC 1739919 30 100.0 35 TCAGTATTGC .............................. ATGACAAAGGAAAGCTTGAGAAGTTTGTGTATAAC 1739984 30 100.0 37 TGTGTATAAC .............................. CAGGTGACGAAAGCACAGCTGTTTGAGTTCCTCGCTT 1740051 30 96.7 37 TTCCTCGCTT ...........G.................. CGGAATCCGTAAGGTAACCCCCTATACGTCCTGGACA 1740118 30 100.0 35 GTCCTGGACA .............................. GCACACGAACTTGGGAAGGAAAGGCATAGGAGGTG 1740183 30 100.0 38 ATAGGAGGTG .............................. CTTCGGTATTCTTACGATGGAAGCTACCACAGTAACAT 1740251 30 100.0 37 ACAGTAACAT .............................. GCAGAATCGAGAGTTTGACACTCAGTGCGTTTTCCAA 1740318 30 100.0 36 CGTTTTCCAA .............................. CTGCACCGGGCATGAATGAAGCCTCGGTAAGCATAT 1740384 30 100.0 35 GTAAGCATAT .............................. CCGACCGTGACGGTGCAGTTCGCGGTACTGTCCAC 1740449 30 100.0 38 TACTGTCCAC .............................. TCAGGAAGAGGATCGAAACGAACACAAAAGTATTCACA 1740517 30 100.0 36 AGTATTCACA .............................. AGGATAACAAGGCAAGGAAACGCCACGGATATAAAG 1740583 30 100.0 38 GGATATAAAG .............................. TCAATCGCCAACTACAGTGAACGCTATTGCCCCCACAC 1740651 30 100.0 38 GCCCCCACAC .............................. CTGGTGGCAGCGATGCTAGGCATGGGTACTCAACTTGC 1740719 30 100.0 38 CTCAACTTGC .............................. CATACTGAAAATGGTTCACTATGCCAATCGGCTAAGTG 1740787 30 100.0 37 CGGCTAAGTG .............................. ACATGGAAGAAGCAAGGAGGTTTTATGACTTCTGCCT 1740854 30 100.0 37 ACTTCTGCCT .............................. ATGTCATAATAGTCGGTTATAAAACCGCTCTGTGGAT 1740921 30 100.0 38 CTCTGTGGAT .............................. ATGTATGGGTGATTTTAGCTCCAAGATGCGCGCTCAGT 1740989 30 100.0 38 CGCGCTCAGT .............................. CTGCAGTTTAGGAGGGCGTACAGGCTGAAGATGCAGTA 1741057 30 100.0 38 AGATGCAGTA .............................. CAGGAGGGCTTCGTAGTCAACGGATAACTCCCGGGCAT 1741125 30 100.0 36 TCCCGGGCAT .............................. TGAGGAAGCAAATTTCTCAAATTCAGAGCGAAACTC 1741191 30 100.0 38 AGCGAAACTC .............................. GGTATAATCATACCAACCCTATAATAAAAATGCAATAC 1741259 30 100.0 38 AATGCAATAC .............................. TATCTGTGCCTTTTATTATGTGTTTAATTATATTAAAA 1741327 30 100.0 38 TATATTAAAA .............................. AAGCCTATATCGACGTTGTTTATATGGGCTTATTTCAT 1741395 30 100.0 39 CTTATTTCAT .............................. TCTTGCTGATACTAGCATATGGAAAAAACTGTTTTGGTT 1741464 30 100.0 36 TGTTTTGGTT .............................. TCAGTTTTACAAAAAGGCTTATAAGAAGCATATGTA 1741530 30 100.0 35 AGCATATGTA .............................. CGGGAATTTATCGATGAGATAGAGGGGCGATTGTA 1741595 30 100.0 37 GGCGATTGTA .............................. TCCTGGTGCAGTTGGTTCTCTTGCTGATACTAGCATA 1741662 30 100.0 35 TACTAGCATA .............................. AAAAGGTCATCCATCGATCTCAGTCCTCACTTTCG 1741727 30 100.0 36 CTCACTTTCG .............................. GGCACGGATACAAACTCATCAGTAAAGACCCAATAC 1741793 30 100.0 37 GACCCAATAC .............................. GAACCTGCCGGAAGAGATGATAGAAGACATGTATAAG 1741860 30 100.0 36 CATGTATAAG .............................. GCACAAGTACGCTGCGGATTACACTGGTCCTTTCAC 1741926 30 100.0 37 GTCCTTTCAC .............................. AGGCTTGCGACAATGCCTCTCTATTGAATCTTTATAC 1741993 30 100.0 37 ATCTTTATAC .............................. AATTGGCGTTTATACCTCGTTGAAGATCATCAGAAGA 1742060 30 100.0 37 CATCAGAAGA .............................. CCTGGAACTACCTTCAGAAGACGCTAGGAATATCATC 1742127 30 100.0 38 GAATATCATC .............................. ACTTCTCCGCAAGCTCATTAAACTTACTCATCTCAGCA 1742195 30 100.0 37 CATCTCAGCA .............................. TCTATCACCTCCGCCACGAGAGCAGCCACTCTCAAGG 1742262 30 100.0 34 ACTCTCAAGG .............................. TAAGGTCATTCAAGGAGACTTTGTCTGTTACAAT 1742326 30 100.0 40 CTGTTACAAT .............................. GCGATTGGTTACATGATGCGATATATGGGAAAGGATTATC 1742396 30 100.0 38 AAGGATTATC .............................. GGCTGTTCTGTACCAGTCCGAGGGAAGGGATCCAGGAA 1742464 30 100.0 38 GATCCAGGAA .............................. CCTGCGAATGTTCGGGGCGATCTTGACCGAACATGAGT 1742532 30 100.0 35 GAACATGAGT .............................. AGGAGGGTTGCGATGGTAAAGGATGGGGGTTATAG 1742597 30 100.0 35 GGGGTTATAG .............................. AGCGATCTCGTATAGCTTCTCATACACTTCTTTAT 1742662 30 100.0 36 ACTTCTTTAT .............................. CTTTCATGCTTAACAAGACTGATTCCGTATTTTCCT 1742728 30 100.0 36 GTATTTTCCT .............................. CCCAGATACACGCACCCAGAGAAGCCCCCATATTTT 1742794 30 100.0 37 CCCATATTTT .............................. GCACCATTACTTCTCATAAATATATCCAATTCCCTAA 1742861 30 100.0 38 AATTCCCTAA .............................. ACTCTTTCAATCGTTGGCATTGCTACCCCTCCGATTCC 1742929 30 100.0 37 CTCCGATTCC .............................. TTAACCAGGTATCCGATTCCGCCCCCCGTACTTTCAG 1742996 30 100.0 36 GTACTTTCAG .............................. TTCTTTTCCGCAATACTTAGCAAAGTATCCAATCAC 1743062 30 100.0 35 ATCCAATCAC .............................. AAAACAGAAAGTATTGGTTTGATGAGTCAGGATAT 1743127 30 100.0 39 GTCAGGATAT .............................. AGGTTATGTTCGGGGTATTGTTCCTGGTATGCGTAAGGA 1743196 30 100.0 37 TGCGTAAGGA .............................. TAATGATACTGCTAGCTTCGTGTATACGAAGAAATGA 1743263 30 100.0 36 GAAGAAATGA .............................. TTAAGACAAGCCCGCGGATCTTTATCTAAAAAGTAT 1743329 30 100.0 39 TAAAAAGTAT .............................. CGAGAGATGACAGGATTGTCCCTGTCCCCGAAGAAATTT 1743398 30 100.0 37 GAAGAAATTT .............................. GAAGTTTGCAGAAAGATATTGTAATGCTCACTATACT 1743465 30 100.0 37 TCACTATACT .............................. ACCATGCCAAGGAGACCATCACGCAACACCCGTTAAC 1743532 30 100.0 35 ACCCGTTAAC .............................. GAGAGAATAGTCTCTGCTAAGAACGGTCTGCCAAA 1743597 30 100.0 37 GTCTGCCAAA .............................. CTGCAGATCATGAAGGTACTGATCTTGAGGCTGTATT 1743664 30 100.0 37 AGGCTGTATT .............................. CGGAAATCCCCGAAGGTTGTTTGTGCTAATTGAGGAT 1743731 30 100.0 38 AATTGAGGAT .............................. GAATCTGTAAGGTGGCTTGTTTACTATGTTCTACACGA 1743799 30 100.0 37 TTCTACACGA .............................. AATGTTGAGGCAGGAATTTCCTTTCCTCAACAAAATC 1743866 30 100.0 38 CAACAAAATC .............................. CAGTTAATACCTCGAACTACTTTATTAGCCACGTGAGT 1743934 30 100.0 38 CCACGTGAGT .............................. GGATACAACGAAAACGGTTTCTGGATTCGCTGCTTGAA 1744002 30 100.0 38 GCTGCTTGAA .............................. CAAGCAAGGAAGTTATAGAGGGTTTGGAAACTTGCCTC 1744070 30 100.0 36 AACTTGCCTC .............................. ATCACCTACCACCCGGACAACTCCATTTTCCCAACT 1744136 30 100.0 36 TTTCCCAACT .............................. TGAGTTATAGATATGATACGGTGCGAATTGATTTAG 1744202 30 100.0 34 ATTGATTTAG .............................. AGGAACGGGGTTTTTATCTATAACATTGATTCTT 1744266 30 100.0 35 ATTGATTCTT .............................. TCACCTACCACCCGGACAACTCCATTTTCCCAACT 1744331 30 100.0 TTTCCCAACT .............................. CGCTTTTATT ========== ====== ====== ====== ========== ============================== 68 30 36 GTTTCCATACCACTATGGTTCTTACGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.00,-2.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [730,690] Score: 0/0.18 # # Final direction: R [0,0.68 Confidence: HIGH] >NC_017934 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2484839 30 100.0 35 ATGTTCTGGA .............................. TTCATTTTATATTTGACTGATGGTAGTGTAAGCAC 2484904 30 100.0 34 GTGTAAGCAC .............................. TTAGCTGGGCAACACTTAGAACTATAGATGATTT 2484968 30 100.0 36 TAGATGATTT .............................. CTATCTTGAGTCTTAAAAGCGATGAACAAAGAAGCA 2485034 30 100.0 38 CAAAGAAGCA .............................. TTGGATCAGAATGTACATTGTTCTCAGTGTCACTCGTG 2485102 30 96.7 35 GTCACTCGTG .G............................ TATGGCGCAGAAATCTTTCTCATGTACTTCGTTGA 2485167 30 100.0 34 ACTTCGTTGA .............................. CTTAAAGTCACGATCGAAGGAGCAGATGAGCTCA 2485231 30 100.0 35 GATGAGCTCA .............................. GCACGTTCATTGCAAAGCTCTGCTGCTGCATGGCA 2485296 30 100.0 33 CTGCATGGCA .............................. TGAAACAGAAGAACATCAAGGGCGTGAAGTATG 2485359 30 100.0 38 GTGAAGTATG .............................. TTATCACGTGCGATTATATGATTGTTGCATATAACGAA 2485427 30 100.0 35 ATATAACGAA .............................. GCTATCAACGTTGAAAATTACAATTATAGTATGTA 2485492 30 100.0 38 ATAGTATGTA .............................. TGTAGTACCATCCGAAACATTATCAACGGTAGTGCCGA 2485560 30 100.0 40 GTAGTGCCGA .............................. TGGGAGAAACTAAATTCAGAATCTATTGTCCAGAAGCGAT 2485630 30 100.0 38 CAGAAGCGAT .............................. AAGTAGTCGGTGGAGTAAGAGATCTTGTCACGTTCCCA 2485698 30 100.0 36 CACGTTCCCA .............................. GGGAAGTAATCCGGGGAATAATCTGGGGAACATTAA 2485764 30 100.0 35 GGAACATTAA .............................. GCGGCGTATTACGAAGGCCGTCAACAGCTACTAAA 2485829 30 100.0 32 AGCTACTAAA .............................. TGGAAGCAGCTTGAAATCTCTAAGATTCCTGC 2485891 30 100.0 38 AGATTCCTGC .............................. AGGAATTTTGGAGATCTGGAATTGGTTCCAAAGGAGAA 2485959 30 100.0 34 CAAAGGAGAA .............................. GAAATCTTAGTAACATCAGGACCAGAGGAAATTG 2486023 30 100.0 36 GAGGAAATTG .............................. GATAGAAGGAGACGACGGACCAGTAGTATCAAGCGT 2486089 30 100.0 39 TATCAAGCGT .............................. CCGAAGACATACGAGACACATTGCTCGACTGGATGAGAC 2486158 30 100.0 36 TGGATGAGAC .............................. TGGCTAAATGTGAGAACTGCCAACGATATTTCTTCA 2486224 30 100.0 36 TATTTCTTCA .............................. AGATCTCGCTTCGCAAATTGATCGAGTTCGTTTAGA 2486290 30 100.0 36 TTCGTTTAGA .............................. CTCCGCCATTACCTTCGATGCACCGTCAGCCCCCTC 2486356 30 100.0 35 CAGCCCCCTC .............................. ACTTTCTTGACTTTCACTTACTGAAAGTTGTACAA 2486421 30 100.0 35 AGTTGTACAA .............................. TGTCCAGAGCCAAAAGGTTGTGGAGAGATTGAACT 2486486 30 100.0 39 AGATTGAACT .............................. CTTTGACATAGACTGTTGTGCCAGACTTTGTTTCAATAG 2486555 30 100.0 37 GTTTCAATAG .............................. ACGCAATGTGTGACACATTCAATCTTGGTTTTGACGA 2486622 30 100.0 36 GTTTTGACGA .............................. CCTTCTTCGATTCATCCTTCATCATTTCTTTCAGAT 2486688 30 100.0 37 TCTTTCAGAT .............................. TGAAACAGGCCGGAATGGTTAATCTTCTCTATCTCAT 2486755 30 100.0 37 TCTATCTCAT .............................. TCGAATACGACACAGAATGGACAAGGCATGATTACGA 2486822 30 100.0 38 ATGATTACGA .............................. AAGAGTTTCGGCAGTTCTAACAGCACCAGCAAATACAG 2486890 30 100.0 35 GCAAATACAG .............................. GTTGAGAATCGTGGGAAGAATCTATGGAAACAAGA 2486955 30 100.0 35 GGAAACAAGA .............................. AGTAGAAGAGAACCTTTCCCCTGTCTCCTGCAAGA 2487020 30 100.0 37 TCCTGCAAGA .............................. GTGGGGGCCTCCCTCTCCAGGGAGTTGTTCAGTTTCA 2487087 30 100.0 39 TTCAGTTTCA .............................. GAGATTCTTTCGGCACTGAAACCCCACCTGGGCTCAGAA 2487156 30 100.0 37 GGGCTCAGAA .............................. GAGGGTGGAGGAAACATGGCAGGCTGGCATCAGCCTA 2487223 30 100.0 36 CATCAGCCTA .............................. TACGCTAAAGAGCACGGAATAGAGGTGGTAGTATGA 2487289 30 100.0 35 GGTAGTATGA .............................. ATCTCCCTTTGAGCACCTGGTGTTTACCTTTCACA 2487354 30 100.0 34 ACCTTTCACA .............................. TCTTCGGTTATCTCTCCGAACTCCACACCCCAGT 2487418 30 100.0 37 ACACCCCAGT .............................. CTGATGTTACTACTACCCATATCACCAATGTTACACA 2487485 30 100.0 34 ATGTTACACA .............................. CTAACTTCAAAAAGTGCCTCGCATCGCACGAGGC 2487549 30 100.0 36 CGCACGAGGC .............................. GAAGTCAATCCGGAGTTAAACCAGTCAACCTCATCA 2487615 30 100.0 35 AACCTCATCA .............................. GAGAGATATATGACTTGTTGAAAGGAGAGATAGAC 2487680 30 100.0 40 AGAGATAGAC .............................. AATATCTTCAAGGATTACCTGAGTTATCTCTGGTCCTTGG 2487750 30 100.0 37 TGGTCCTTGG .............................. ATAAAAGGTCATTGACATACGAATAGCGGCAACAGAA 2487817 30 100.0 35 GGCAACAGAA .............................. TGTGTTGCTTCAAAAAAACACAGCAAAACAAATAG 2487882 30 100.0 36 AAACAAATAG .............................. TACTATACCAGGATAGACTAACCCATACTATCACAC 2487948 30 100.0 41 ACTATCACAC .............................. TTGGGTAGCTGTAGCTTGTGGGGGTTACCATTCTCTAGCAA 2488019 30 100.0 37 TCTCTAGCAA .............................. AGAGACGGGCCTCCTCCAGGGCCGCTTCTACTGTAAG 2488086 30 100.0 36 CTACTGTAAG .............................. GCCCTCTCCAAAACCCCAAGGTTGGTTCGTATATAA 2488152 30 100.0 41 TCGTATATAA .............................. TAAAGATGATGCCGAGAAAGAAAACATTGGTAAAGGAGGCT 2488223 30 100.0 37 AAAGGAGGCT .............................. TCGCAGTTATGGAAGCGCCCTTTGAAATGCTGCACGA 2488290 30 100.0 36 TGCTGCACGA .............................. GAGCAAGAACTGTTCAAGCGAAAGTAGTGTCTGGAA 2488356 30 100.0 37 GTGTCTGGAA .............................. TTGCAGAACTGCATATTGAGGAGTTCAATACAGAGAA 2488423 30 100.0 36 ATACAGAGAA .............................. CTCGATCATTTCGAAGTCTTGCATGGTTTTGAGTGC 2488489 30 100.0 37 TTTTGAGTGC .............................. CACTAACTTCTTCTGCTTTCCTTTCTTCTTCACGGAT 2488556 30 100.0 35 CTTCACGGAT .............................. TGAAATCTCTCTTTCCTTGCCTGTATCGTTCCTGA 2488621 30 100.0 36 TCGTTCCTGA .............................. CGGCAAGAGATACCCTTATGTTCGGAGGTTGGATAC 2488687 30 100.0 35 GGTTGGATAC .............................. GAGATGAGCGAAATAGACCGGCTCTTGCCACAAGC 2488752 30 100.0 35 TGCCACAAGC .............................. GCGTAGCTTGCTCCCATTGAAATATGAAATCGAAA 2488817 30 100.0 36 GAAATCGAAA .............................. TCCAGATCGCTGCATCTTCCATAGGCCTCTATCGTA 2488883 30 100.0 37 CTCTATCGTA .............................. AGTTCTAGTTGAGAAGGGTCTTTATCTCGAAGAATTG 2488950 30 100.0 36 CGAAGAATTG .............................. TCGTTGTAACTGCCTGTCATGATTCGATTCCGGGGA 2489016 30 100.0 36 ATTCCGGGGA .............................. ATCAAGAGCGAACCGAAGAAGCAATCTCAAAAGCCA 2489082 30 100.0 36 TCAAAAGCCA .............................. CAAGGCCACGAGTGAGAAGGAAGCGGAAACGATCGT 2489148 30 100.0 34 AAACGATCGT .............................. GAGAGAGTAGTTTGAAGAGTACCGAGCTTTGCGA 2489212 30 100.0 36 AGCTTTGCGA .............................. GAGGATTACAGGAAGAAGAGATTGCGGGAGGCAAAA 2489278 30 100.0 35 GGAGGCAAAA .............................. AATGACCCAAGCGGGGTGGATACCTTGTATGATTC 2489343 30 100.0 37 TGTATGATTC .............................. TCACCTGCCAGTTCCAGTTCCCTGGCAATCCTACGGA 2489410 30 100.0 39 ATCCTACGGA .............................. GACCCGGCCGCGTTAGCGGTCTCTTCCAGTCTGTTCCTG 2489479 30 100.0 37 TCTGTTCCTG .............................. GAGCGATAGCGAGGGAATAGCATGGAACCGCTGAAGA 2489546 30 100.0 35 CCGCTGAAGA .............................. GATTGATGAAAGGCTGGATAGAGTCGAAGAGAACA 2489611 30 100.0 36 GAAGAGAACA .............................. AGAGACTCTTTGGCATTTCTATTCCTTCTGGCATAT 2489677 30 100.0 36 TCTGGCATAT .............................. AAGTTCCAATGGTAAGTCTTTTGAAAACGATACCCA 2489743 30 100.0 34 ACGATACCCA .............................. CTGGCCAATCGTACTCCGTTACATACAAGGAAAG 2489807 30 100.0 40 ACAAGGAAAG .............................. GATTCTGAAAAGGAGTTGGGCCATTTTCAGGCCCTCCCCA 2489877 30 100.0 37 GCCCTCCCCA .............................. TTGGCAGGATTGATCGACTCTGACGGCACCGTCAATA 2489944 30 100.0 38 ACCGTCAATA .............................. GCGATAAGTGATCTCAAGTCTCGAAACATGATCACCTA 2490012 30 100.0 35 TGATCACCTA .............................. GAAGATAGACGAACTCTTCGGCATTACGCAGCGCA 2490077 30 100.0 35 ACGCAGCGCA .............................. CTCACATCGCACCTCCTCTCAGTCTTTTCTTCCTG 2490142 30 100.0 35 TTTCTTCCTG .............................. GTGATAGGAAATTCAGGACTTCAAATCTATATGCT 2490207 30 100.0 36 TCTATATGCT .............................. GGCCAACGGCTCAAATCATGGCTCGCCTGTGAGTCA 2490273 30 100.0 35 CTGTGAGTCA .............................. AAGTGCTACTGGATTCCCAGATGTACCATTTCGTA 2490338 30 100.0 40 CCATTTCGTA .............................. GAGAAGCTGGAGAAAGAGTCCGCGACTCTTTTCGACAGCA 2490408 30 100.0 35 TTCGACAGCA .............................. CTCATTTTCATGCACTCGAAGATCTGGTATTCGGA 2490473 30 100.0 35 GGTATTCGGA .............................. ATGAACTTGGGGTGCATGCTATGCCCCTGAACAGT 2490538 30 100.0 37 CCTGAACAGT .............................. CTCAGCTTCTTGAATTGGCGGGTTTGTCTCACACCAA 2490605 30 100.0 39 CTCACACCAA .............................. GGTACAGCGTCATCGAGAGAGACAGAAAGCACTAGCCAG 2490674 30 100.0 34 CACTAGCCAG .............................. CTCAGAATCGGGCCTTGATATACGTGTCAGTGGA 2490738 30 100.0 34 TGTCAGTGGA .............................. GAGATATCATTCATCAGCAGCGACCCCTCCGATG 2490802 30 100.0 36 CCCTCCGATG .............................. TCTCTGTTGGCTGTATCACCTAGACCTAGTTGTCCG 2490868 30 100.0 35 TAGTTGTCCG .............................. TATCGTATGTATGTTGCCATCTTCGAGATTGCAGG 2490933 30 100.0 35 AGATTGCAGG .............................. TCTTTTGTGGCAACAATATAATTCCAAGGCTTACG 2490998 30 100.0 35 AAGGCTTACG .............................. ATTGCCATCAGTACAAATGCCATATCGAGCCTCCT 2491063 30 100.0 36 CGAGCCTCCT .............................. GGTAGTAGAAACGTGACATATATCACGCCATGAACA 2491129 30 100.0 35 GCCATGAACA .............................. TCAACTGTTTGAATACGAGTGACTGATAGATTAGA 2491194 30 100.0 35 ATAGATTAGA .............................. AGCCGTATCTGGTGGATATTACCATTCTTTAGGAA 2491259 30 100.0 36 TCTTTAGGAA .............................. TGGATCTTCCCATTCTTTAGCAATGAAGGAGTGATT 2491325 30 100.0 37 AGGAGTGATT .............................. ATGTTGATTACCTTTGCGTTCATGTCGTCTGACAAGA 2491392 30 100.0 35 TCTGACAAGA .............................. TGGCTTTACATGCGCATTGAAACCACCAAACGCTG 2491457 30 100.0 36 CCAAACGCTG .............................. CCAGAAGCCACTGCATCTTAGAACTGCAATCGATGT 2491523 30 100.0 36 CAATCGATGT .............................. ATAGGCTGTTGGAAAGAATCACATTCCCATATTCTG 2491589 30 100.0 36 CCATATTCTG .............................. AATTCACCGCCGGTCTTCCGAGTTGGAGATGAACAA 2491655 30 100.0 35 AGATGAACAA .............................. CAACGCCCATATTCTCGGCAAATCTGAGCAGCAGG 2491720 30 100.0 36 GAGCAGCAGG .............................. CTTTGGTGATCTCTACAAAATTGCATCTGTTAATAA 2491786 30 100.0 36 CTGTTAATAA .............................. TGGCCAAGGCTTCACCGGTAAGGCCGAGATTTTCTC 2491852 30 100.0 38 AGATTTTCTC .............................. GTAGAAATCTCACACGAGTCGGCACCGGTAGAGCTGGA 2491920 30 100.0 TAGAGCTGGA .............................. CCATTACTAT ========== ====== ====== ====== ========== ============================== 108 30 36 GTTTCAATTCCTCATAGGTAGTCTGGAAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [884,169] Score: 0.18/0.18 # # Final direction: R [0.18,5.55 Confidence: HIGH] >NC_017944 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 344522 30 100.0 35 NNNNNNNNNN .............................. ATCCGGTCCCAGTAGAGCGCGTAGACGCCGAGGGC 344587 30 100.0 37 NNNNNNNNNN .............................. CTTTGTCGGCGAGGACGAGCGCGCCGGCTTCGAGCGT 344654 30 100.0 35 NNNNNNNNNN .............................. GAGCTTGTCGAAGACGATTGGGTCGCTCACACTCC 344719 30 100.0 34 NNNNNNNNNN .............................. CGACAATATTCGACCAATTGGACATATGCATCCT 344783 30 100.0 37 NNNNNNNNNN .............................. GCCCGTTTAACTAATAATGTCATGGTTCGGAAAGCGG 344850 30 100.0 36 NNNNNNNNNN .............................. TCGACACGACAACACGACTCGATTCGCCGTACGACG 344916 30 100.0 36 NNNNNNNNNN .............................. TACACCGGACCCGAACTCGACGTGCACGTGAAGCCC 344982 30 100.0 36 NNNNNNNNNN .............................. TCTACCAACTGGTTGGGTGCTGCTCGGATATCTCTC 345048 30 100.0 34 NNNNNNNNNN .............................. GACCGGGACCCGTGATGCTCGACAAGGTTGTAGT 345112 30 100.0 36 NNNNNNNNNN .............................. ACGCTCGGTCCCGGCGAGACGGCGACGTTCGCGCCG 345178 30 100.0 36 NNNNNNNNNN .............................. TAAACGCATCTAATGAGTTATCAGACTCGTGGACTG 345244 30 100.0 39 NNNNNNNNNN .............................. ACCTCATAGCGCGGGTCCGCCCGTCTGGGTTGGCGTCTG 345313 30 100.0 38 NNNNNNNNNN .............................. CTTGACAACGGCTTTGACGGTCGGACAATGACCTATCC 345381 30 100.0 37 NNNNNNNNNN .............................. TGTCGTGACTGCGCCCACGTCATCACTATCGGTGATT 345448 30 100.0 34 NNNNNNNNNN .............................. CTCAAGAGGTGGCTCTAATGGGAATCAAGCAGTT 345512 30 100.0 38 NNNNNNNNNN .............................. AGCGTCGACGACGTGCTCGACCGACTGGAGTCTGACCC 345580 30 100.0 36 NNNNNNNNNN .............................. CGCGCACGGCATCCACGTCGACGAGCGGGACGCCCG 345646 30 100.0 38 NNNNNNNNNN .............................. ACGTCCTCGGTAGGATGTTTCGCCGCGAGACTCTGCAA 345714 30 100.0 34 NNNNNNNNNN .............................. GGGAACCGTTGAGGTCCTCGTCGATGATGCGAGC 345778 30 100.0 34 NNNNNNNNNN .............................. ATCGACCGGAACACGCGAACCACGCTCGGCGAGC 345842 30 100.0 35 NNNNNNNNNN .............................. ACTCCAACGAGTTCATTAATCCCGATGGGGAGGAG 345907 30 100.0 35 NNNNNNNNNN .............................. TTACAGACGATTCGGTCGACAGAACCCTATCGCCC 345972 30 100.0 1 NNNNNNNNNN ..........C.....T.CG..A.....T. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 23 30 35 GTTACAGACGAACCCTAGTTGGGTTGAAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,7] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 90% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [45.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [100,134] Score: 0/0.18 # # Final direction: F [1.65,0.27 Confidence: HIGH] >NC_017944 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 333687 30 96.7 38 CCTTGGTCTC ............C................. CCGGCCGTGATTGGCACGACGTGCCACGTGTTCGCGAC 333755 30 96.7 36 TGTTCGCGAC ............C................. CTGAGCGGCGGTCTCAAGAGGCGACTCGACGATGTC 333821 30 100.0 36 CGACGATGTC .............................. TGCATGGACGATCTCGTTCACGTCCTCCGGCAGTCG 333887 30 100.0 38 CCGGCAGTCG .............................. CAGGCGTTCTTGCGCGCCTGCCACCTTCTCGGCGGGAT 333955 30 100.0 36 TCGGCGGGAT .............................. GATATTCGTGGACGTTCGGAGCGGCGGAATAAAGAA 334021 30 100.0 35 GAATAAAGAA .............................. ACTCCAACGAGTTCATTAATCCCGATGGGGAGCAG 334086 30 100.0 35 TGGGGAGCAG .............................. GGGGGTGTTCCAAAATGAGCTGGCACCCGGTTCGG 334151 30 100.0 35 CCCGGTTCGG .............................. ACCGACGTAACACTCTCGGTTGATGGGGGAGACCT 334216 30 100.0 37 GGGGAGACCT .............................. ATTCTCAGGGGGCGTGCCGAGGCGTCCCTCGGTTCCG 334283 30 100.0 35 CTCGGTTCCG .............................. AGTTGAGACCGTCGCGCCCGGATTCCCATGTGACT 334348 30 100.0 CCATGTGACT .............................. CATGCCCAAT ========== ====== ====== ====== ========== ============================== 11 30 36 GCTTCAACCCAATTAGGGTTCGTCTGTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [50.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [236,854] Score: 0.18/0.18 # # Final direction: R [0.27,0.55 Confidence: MEDIUM] >NC_017946 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1466645 29 93.1 45 CGCTAAATTT ............C.A.............. AGTGGCCTTGCAGAGAATACTCAGAATAGAGATAGTTACCGAGGA 1466719 29 100.0 44 TTACCGAGGA ............................. AAGAAGTATTATAGAGCGTTGAGGAATGGTAAGCAGGTTTTGTG 1466792 29 100.0 45 AGGTTTTGTG ............................. ACGAAAACACCCCATTGGGAGGCGTTACGTTTCTTTGACGGTGAT 1466866 29 100.0 42 TGACGGTGAT ............................. TTGTGTCGTCATGGAGATACTCTTTTACATATAAGTTTTCGG 1466937 29 100.0 36 AAGTTTTCGG ............................. CGGCTCCTGACGTCTTTATTTTTTTGCACCCTCTTA 1467002 29 100.0 CACCCTCTTA ............................. TTTGGGTTT ========== ====== ====== ====== ========== ============================= 6 29 42 CTTTCCATACTATTTAGTTCTTCGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.52%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [327,642] Score: 0/0.18 # # Final direction: R [0,0.41 Confidence: MEDIUM] >NC_017946 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 110559 29 100.0 39 AAAACCCAAA ............................. TTTCCCTTATCTCATACATTGCCGATCACCAATTGTATG 110627 29 100.0 43 CAATTGTATG ............................. CTGGTAAATGGTGGGTCGGTCGGTAATACTAGCGAGCAGCAAA 110699 29 100.0 41 GAGCAGCAAA ............................. AGATTACCGTCAATTCTATATGTAACTACTGCGAACCACCA 110769 29 100.0 39 CGAACCACCA ............................. ACGTTGCCTGCTCGACTGATATAATGCCATCTCTAACCG 110837 29 100.0 37 TCTCTAACCG ............................. TGTCCAATTCTCTTTTATGTCTTTTGAAAACAAATCA 110903 29 100.0 36 AAACAAATCA ............................. CCCTCTTCAAAAACGCTAACAACCTCAGATATCCAA 110968 29 100.0 37 AGATATCCAA ............................. TTGTCCATCGGGTGCAGCACCCATGTACATTTTTGTG 111034 29 100.0 43 CATTTTTGTG ............................. GACTTCAAGGATAACAAAATCGCCGAGGTTGGTTTTCTGGGCA 111106 29 96.6 TTTCTGGGCA .......................A..... AGTTCCCTTT ========== ====== ====== ====== ========== ============================= 9 29 39 GTTTCCGAAGAACTAAATAGTATGGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.52%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [65.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [635,206] Score: 0.18/0.18 # # Final direction: F [0.86,0 Confidence: HIGH] >NC_017946 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 800299 20 100.0 47 NNNNNNNNNN .A....G........A...T GTGCAAATGAATGAGAATATATTGAACATAAACATACCTTTCAATTC 800366 20 100.0 48 NNNNNNNNNN ..C............T.G.A CATGAGGGCCGTCGAGAAGGCCGAGAGGGCCCTGAGCGCTTTCAATTC 800434 20 100.0 48 NNNNNNNNNN .T..T............... AAAAACTCGGAGTGGACATAAACACGGACAAGCTCGCCTTTCAATTCT 800502 20 100.0 49 NNNNNNNNNN .T..T............... TTTACGTCTCGGACATTGACTCAGTTATGATGCAGTATTCTTTCAATTC 800571 20 100.0 45 NNNNNNNNNN .T..T............... TAGCCGCTGAGGAGAAGTGGGCAAAGAGGATCATGCCTTTCAATT 800636 20 100.0 48 NNNNNNNNNN CT..T............... TACAAGCCGATAGAAGGAGACAGAACCCCAGCAACCCTCTTTCAATTC 800704 20 100.0 47 NNNNNNNNNN .T..T............... TAAGCTTAAATCCCTCTGGAGTTATGTCGTAAATGTACTTTCAATTC 800771 20 100.0 47 NNNNNNNNNN .T..T............... GTTGGTGCGTTGGGCTTGGTTGTTCTCGATTAGTGTGCTTTCAATTC 800838 20 100.0 47 NNNNNNNNNN .................... TTGATGCTCCTTCTAAGCCTGTTGAGATACATAAGAACTTTCAATTC 800905 20 100.0 49 NNNNNNNNNN .................... TCGAATGGGTCTCTAAAAATCAGGGGGATGTTGAAATAACTTTCAATTC 800974 20 100.0 47 NNNNNNNNNN .................... GCCGAGGCCCCACCCGGGGGCCGGGGGAACCCCCAAGCTTTCAATTC 801041 20 100.0 47 NNNNNNNNNN .................... AAGATCTACCTCCACAATGTCCCCATCCTTAATTCCCATTTCAATTC 801108 20 100.0 47 NNNNNNNNNN .................... CAAAAACATCCTTATACGGGTCGAACACTCCACCGACATTTCAATTC 801175 20 100.0 49 NNNNNNNNNN .................... GCGAGATCCTAAGGGACAAGTACGGCTTTGACTTTTCGGATTTCAATTC 801244 20 100.0 49 NNNNNNNNNN .................... CTTATGTCAGGTACTATTCTCCTGATTATCATACTGAATATTTCAATTC 801313 20 100.0 1 NNNNNNNNNN .................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================== 16 20 47 TCTTATAGTCTTATTGGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [211,494] Score: 0.18/0.18 # # Final direction: R [0,0.86 Confidence: HIGH] >NC_017946 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 987180 29 100.0 43 NNNNNNNNNN T.C..A......C.A.............. GCACAACTGAGGCCGTGCATTTCTTCACCTACAACAACACCAG 987252 29 100.0 47 NNNNNNNNNN ............................. GGAGGGCTAACAATACTAAAATATGAGACGGATGAGGAAGTTGAGCT 987328 29 100.0 37 NNNNNNNNNN ............C.A.............. TTGGTTGGAGGGAGCTTAGTAGGGCGTTTGTTGAGGG 987394 29 100.0 36 NNNNNNNNNN ............C.A.............. CAAAACTACCCCTTACAAGCAAAGGTGGTGGTTGTG 987459 29 100.0 45 NNNNNNNNNN ............................. TTCAGAATACTGTAAGAGGGACACCGAGATTGTCCTAAGGTTCGT 987533 29 100.0 38 NNNNNNNNNN ............................. CCTTTCTTTGGGGGTGTTGTTGTGCAGGTGATTTTTCC 987600 29 100.0 37 NNNNNNNNNN ............................. AAGTGATGACACCGGACGTTGAGCCACCCAACAACTT 987666 29 100.0 36 NNNNNNNNNN ............................. TTGATGAGCTGGGGCCGGTAGGGGCCCCAGACAGCA 987731 29 100.0 44 NNNNNNNNNN ............................. AAGTTCTAGGTATGAAAGAGATTGCCTTGTCTGTTTGTCTGTTT 987804 29 100.0 36 NNNNNNNNNN ............................. AAGGCCAGGGAGGTCGGGAAGCGCTTGATCGGCGGT 987869 29 100.0 43 NNNNNNNNNN ............................. ATGAGTTATATGAAGAGTTTAATGATTACATTCAAAAGCAAAT 987941 29 100.0 36 NNNNNNNNNN ............................. TCTTCACTTCAACCCCAGAATACCTAACAAGGTCAG 988006 29 100.0 54 NNNNNNNNNN ............................. CTAAATAGTATGGAAAGCACCAGGAGGCGGTAAACTCATAATCACTCGGCAACC 988089 29 100.0 38 NNNNNNNNNN ............................. TGTAACCACATAGAATAGTAAAGTGAGCCTGGGCGTAA 988156 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 15 29 40 CTTTCCATACTATTTAGTTCTTCGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.52%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [64,643] Score: 0.18/0.18 # # Final direction: R [0,0.59 Confidence: HIGH] >NC_017957 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 369748 31 93.5 34 GACTGCCCGC --............................. TCGCCTACGCCGAGTTGCCGGATCCCATCGCCGG 369813 31 100.0 35 CCATCGCCGG ............................... CTGATCTTCCACCGACACCCCCATCCAGACGTTCG 369879 31 100.0 34 CAGACGTTCG ............................... CCTATATCGGCAGCGATGCCGACAAGGAGGCCAA 369944 31 100.0 34 AGGAGGCCAA ............................... GCGGGGAGGGGGCTACCTCCACCTGGGGTCACGC 370009 31 100.0 33 GGGGTCACGC ............................... GGCGTAAATCTCTATTCGGCATCTGAAGTCTCT 370073 31 100.0 35 TGAAGTCTCT ............................... TGGAGATAGCCCGGGGACAGCGCCTCTTGCAGGTT 370139 31 100.0 35 CTTGCAGGTT ............................... CACTCCTCAGCCGAATAGTATCCCCCGCCCGGAGG 370205 31 96.8 33 CGCCCGGAGG ..............C................ CGTCATGGACGGCTACCGCGATGAGACATTGCG 370269 31 100.0 33 AGACATTGCG ............................... GCCGATAATCTGGCCGCCCGAACTGCGCGCCTG 370333 31 100.0 33 TGCGCGCCTG ............................... CTCGCTCATTTCGGCTCCCTTTCGACGGCGTCG 370397 31 100.0 35 GACGGCGTCG ............................... AATTCGATCTGACCGCGGAGGTGCGCGATCAGATC 370463 31 100.0 35 CGATCAGATC ............................... GGCAGGTCGCCTTGGCCACCAGACTTGATATCGCT 370529 31 100.0 34 TGATATCGCT ............................... TCTTGTCGACGACGGCCTCGATCTGGGAAGTGCT 370594 31 100.0 33 GGGAAGTGCT ............................... TATCACGCCGCCCTGGGGGCGGTACTGGAAACC 370658 31 100.0 ACTGGAAACC ............................... TCACCCCCT ========== ====== ====== ====== ========== =============================== 15 31 34 GTTTCAATCCACGCACCCGCAAGGGTGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [7,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.60,-4.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [33.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [112,441] Score: 0.18/0.18 # # Final direction: R [0.74,5.36 Confidence: HIGH] >NC_017957 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 231261 31 100.0 34 NNNNNNNNNN ............................... GCGGGGCACCGGTACAGCGTGGAAGCCCGCGCGA 231326 31 100.0 34 NNNNNNNNNN ............................... CGGATCAGTGCCCCGGGGGCGGCGGCGCTGACCC 231391 31 100.0 33 NNNNNNNNNN ............................... GAAATCGACTTTGTCGAGGTGGCGCGATCTGGC 231455 31 100.0 33 NNNNNNNNNN ............................... CGCCAAAACGCGCGTCTGACGATTCACCGTGGC 231519 31 100.0 33 NNNNNNNNNN ............................... CCTGAGTGTGTAACCGCACTCACGAATCAAATC 231583 31 100.0 35 NNNNNNNNNN ............................... CACTGGAGCCCGGCGACGCTCAAAAAAACCTTCGG 231649 31 100.0 34 NNNNNNNNNN ............................... ACGCCCGAGGCCGATCCTGGCGATGGTGCCGCCG 231714 31 100.0 33 NNNNNNNNNN ............................... TGGCCATCGCCGCGGCCCTGGAAGCGGAGGGCC 231778 31 100.0 34 NNNNNNNNNN ............................... CGTACTTCCGGAACGGCGAGGCCGTGAACGTAAA 231843 31 100.0 34 NNNNNNNNNN ............................... AGCTGCCGCGGCGCCCGCGCCCGGACCATCCCGT 231908 31 100.0 34 NNNNNNNNNN ............................... TGGTTGGTTGATGTCAGGCTGCATCAGGGGTCTC 231973 31 100.0 36 NNNNNNNNNN ............................... GCGGCGCGCTCGACCAGGTATTCCATAGCCGCGGAC 232040 31 100.0 33 NNNNNNNNNN ............................... GACGCCTGCGTGGCCTTCGCAGGTCACGATCTG 232104 31 100.0 34 NNNNNNNNNN ............................... CATGCCCACGATATTCGCGCGAGCAGGCGGGCGC 232169 31 100.0 35 NNNNNNNNNN ............................... CGGGTCGGATCTTGGCTGGAGGAGGCTTCCTGATG 232235 31 100.0 34 NNNNNNNNNN ............................... GACTCGGACGCACTGGCCGCCGCGGAGGACAACC 232300 31 100.0 34 NNNNNNNNNN ............................... CGTCGGCGTCGGCGAAGGCGGACATCAAGCCCGA 232365 31 100.0 35 NNNNNNNNNN ............................... ACGGCCGAGCGCCCAAGCTATGCCGAGCGACGCAC 232431 31 100.0 33 NNNNNNNNNN ............................... ACGGCATCGGATTTGATGCCGTCGAAAGGAGCG 232495 31 100.0 32 NNNNNNNNNN ............................... TTCGGCTGCCCGACGGCACGCCGTGCACCACG 232558 31 100.0 1 NNNNNNNNNN ............................... NNNNNNNNNN ========== ====== ====== ====== ========== =============================== 21 31 33 GTCGCACCCTTGCGGGTGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [5,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.70,-5.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [40.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [265,50] Score: 0.18/0.18 # # Final direction: F [4.95,0.74 Confidence: HIGH] >NC_017954 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 967783 24 95.8 43 CTCCACGGTG ..............C......... ACAGTAGCACTAGCGACGGCGTTCACCGCGTATGAGTTGAAAG 967850 24 91.7 41 GAGTTGAAAG ..............CC........ ACGTTAGGATCGAGATTGTACACGTTTATGTGCGACGGATC 967915 24 95.8 47 GCGACGGATC ..............C......... AGGAAAGAGATCACAGCAATCATCGCCTCACTAATACTCGTAATAAT 967986 24 95.8 45 TCGTAATAAT .............C.......... TCGTGTGGGCGTACTGTGACTACCACAAGAAGTACGACATATGTA 968055 24 100.0 40 GACATATGTA ........................ CTTCTGCAGGCACGCATCCAGTGTAGCGTACTCGCTCAAG 968119 24 100.0 46 CTCGCTCAAG ........................ ACCGAGGAGCAGAAGAAGGTGCTGGACGCCCTCAACGAGCTGATCC 968189 24 100.0 46 GAGCTGATCC ........................ TTGTTCACGAGTTGGTTGTAGTACTCCGTCAGGAGATATCTGATTA 968259 24 100.0 37 TATCTGATTA ........................ GGCTGTGACGCGGAGGAGGGACATCCTAGATGCGTAC 968320 24 100.0 41 AGATGCGTAC ........................ TTTCCTGGAGGCGCGTGGAGGACCTTCTAAAAGACATTTAC 968385 24 100.0 41 AGACATTTAC ........................ ATGAGTTGATCAACAAATACAATAAGGGCGAGTTGATCCCT 968450 24 100.0 41 GTTGATCCCT ........................ TAGTAGTCCCTCGCAGTTCTCAACGTGTACGTAAACATGCC 968515 24 100.0 43 TAAACATGCC ........................ TGGCAGAGAGGTAGGGCGTGAACCTCGAGACGAGAATACTCGT 968582 24 100.0 41 GAATACTCGT ........................ AGAAAATGTATGTCCGCACATACCCAAGGAATACATAGAAA 968647 24 100.0 42 TACATAGAAA ........................ TCACTGGCGTCAAGAAGAGGTACGTGGCTCACGTGGTCTGGG 968713 24 100.0 43 GTGGTCTGGG ........................ ACCTCCTGGCAGAGGCTGACGCCCTGCTCAAGAAGCAGGAGAT 968780 24 100.0 43 AGCAGGAGAT ........................ CTCACCTAGGGGTCGTCCTCGTAGTCGTCGTCCTCGTAGTCCT 968847 24 100.0 46 TCGTAGTCCT ........................ ATTGAAGACTATCTTGTCCTCGTCCACACCCTTGATGCACTCCGAT 968917 24 100.0 40 GCACTCCGAT ........................ ACGGGTGTCGAAGAAGGGCGAATGGGGCGCGGGAAAAAAA 968981 24 100.0 46 GGGAAAAAAA ........................ AATATCGGCGAGAACGCGTTTCGTATCGCGTCGAAGATACCGCCGA 969051 24 100.0 44 ATACCGCCGA ........................ TTGAGATGCGTTAGGTTAATTAGCCCGCATTAACTGTATATAAT 969119 24 100.0 55 TGTATATAAT ........................ TAATTCCACCTGTTGTACCCGCTCCAGTCCTCCTCCACCCTGAAGTACTTCCGCG 969198 24 100.0 41 TACTTCCGCG ........................ ACTAGAAGTGTATCGTGATGTTCTGTGGTGGTACCACGATC 969263 24 100.0 39 TACCACGATC ........................ ACCCTATCACCGTGAGAAGTTATGTGTTAGAGGGAAAAA 969326 24 100.0 41 GAGGGAAAAA ........................ TTCTTTCAGTTTTTCATAGGTGGGAGTCCTAACATAGATTG 969391 24 100.0 42 ACATAGATTG ........................ GATAGAGAAGCCGAGCTGGCTCGACCCGATTCTGCGAGACTA 969457 24 100.0 39 TGCGAGACTA ........................ GCCTGGGTGCTGACGCGCCAAGGCATCGAGATAAACGTC 969520 24 100.0 42 GATAAACGTC ........................ ATGCTGTGTGGAAGGCGGCGCACAAGAGGCTCGGCCCGATAC 969586 24 100.0 42 GGCCCGATAC ........................ TCGACTCCTCGAGCTCTGCTAATATCTCCTCGTCGAGAACCG 969652 24 100.0 44 TCGAGAACCG ........................ ATGGTGAGGCTGTAATCAATGGACGCAGAATTGTATTCCCATAC 969720 24 100.0 42 ATTCCCATAC ........................ CTGTACTCGTGAAGCTGGTTCACGACAGTTTTAATTTTCGCG 969786 24 100.0 46 AATTTTCGCG ........................ AGCCAAAAAGCTGGAGCTATACATGGGCTTTATGCTAAGCGGTAAA 969856 24 100.0 47 AAGCGGTAAA ........................ CCGGGATAGACGTGGACAAATACGCCGACTCGATACTGGAGCTGACA 969927 24 100.0 42 GGAGCTGACA ........................ TTAATGTACGCCACTTTTCGGGCGGTACACGTATCTTTGTTT 969993 24 100.0 46 ATCTTTGTTT ........................ GGCGACGGAAATAGTTAAATCGGAGTGCGAGGTGTTAAAGACTTGC 970063 24 100.0 41 AAAGACTTGC ........................ AGCTCACCATGCGGATAACTAACTCCGACTCGGCGGCTAGG 970128 24 100.0 46 GGCGGCTAGG ........................ TGGTGCCTCGAAGCGTACGAGGCGGGGCTGAAATATGCTGGCGGCG 970198 24 100.0 46 GCTGGCGGCG ........................ AGAACCTGGCCACGCGAGAGGAGGCGGCAGAGATACTGCGTCACCA 970268 24 100.0 42 TGCGTCACCA ........................ AAGTATTTTAACATCACTGATCCAAGCCTCATTCCATCTAAC 970334 24 100.0 39 TCCATCTAAC ........................ TCGCGCGCGTGGGCGCCACCACAGCTGTGTACGCCAAGA 970397 24 100.0 39 TACGCCAAGA ........................ GTTGCGGATGTCGAGTTCGAAAGCGGCAGGCACGCGGTC 970460 24 100.0 43 GCACGCGGTC ........................ GTCAACGAGGTAGGAGTCTTGGAGCTTTGGATATTCAAAATTG 970527 24 100.0 41 TTCAAAATTG ........................ TTCCAAGCCGTAGAGCGTGATAAGACCAATGAACACTATAA 970592 24 100.0 41 AACACTATAA ........................ CCCCGAAGAAACACTTTTTTCATCGCGGGTAATATTCCCTG 970657 24 100.0 40 ATATTCCCTG ........................ CCCGTCTTCTTCGACGCCGTGTACACCACGTAAAGCTTAT 970721 24 100.0 43 TAAAGCTTAT ........................ CCCACGACCTTCAAGGCAACACACCCCCACAAGCTTATTAGCC 970788 24 100.0 43 CTTATTAGCC ........................ ATCGGGCCGAGGCGCTTGTGCGCCGCCTTCCACACAGCATTAG 970855 24 100.0 43 ACAGCATTAG ........................ ACGTCGAGCAGGCTGTAAACCCGGGCTATTTAGCCGTGAACTT 970922 24 100.0 41 CCGTGAACTT ........................ TGAGGAGGTACCAGCCGCCAGACTGGTGGAACATACCTGCC 970987 24 100.0 CATACCTGCC ........................ TGAGCTTCGC ========== ====== ====== ====== ========== ======================== 49 24 42 CTTTCAATTCTTCTTGATTGCTTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [76,364] Score: 0.18/0.18 # # Final direction: R [0,5.36 Confidence: HIGH] >NC_017954 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 975000 24 100.0 44 GCGAAGCTCA ........................ CGGACACCACAGCTGTGGCACCACAGGCTACGGCACAGGCTCCG 975068 24 100.0 43 ACAGGCTCCG ........................ ACGATCGAGGAGGTCACGATACGAGACCCGGTAACTAAGCAGC 975135 24 100.0 43 ACTAAGCAGC ........................ GAACTCGATCATTGCGACCTGGCCTCAGTGCTTGCGCTTCTTC 975202 24 100.0 45 GCGCTTCTTC ........................ GCATAGCCGAGCTCGCCGAGACCAGGCTGAAGGGGGGTGCGGGCA 975271 24 100.0 45 GGTGCGGGCA ........................ CGAGCATCTGCTTGAAAGCCGTGAACAATCCGAGCTCGGGGTATG 975340 24 100.0 40 TCGGGGTATG ........................ AGCACTTGACTCGCTCTAGAGAAGTCGTAGCCATACTCAT 975404 24 100.0 40 CCATACTCAT ........................ TACAAGGTGATGGAAGAGGCCGCGTACACCACTCCGAGCC 975468 24 100.0 43 ACTCCGAGCC ........................ TTAGTACTGGTTTACCATCGGTTGTTGTAAAGTACTCTACTTT 975535 24 100.0 41 ACTCTACTTT ........................ CATTTTTACCCTTCGCCCCTACGGTAAAGAATAGCCGTGGA 975600 24 100.0 43 TAGCCGTGGA ........................ TTACTAACTGCTTGAACAGCTTTCCGCGTTCATTGAGTAGTAG 975667 24 100.0 39 TGAGTAGTAG ........................ CCTTAGAGCTCTTGAAGGGGATGACAATCCTGTCGTCCT 975730 24 100.0 41 CTGTCGTCCT ........................ GTTTAGCGTCGTGTCGAAGATTTCGTATTCGTCGAAGATTC 975795 24 100.0 40 TCGAAGATTC ........................ ACTTGAGAGTAGCCTCGTGAGTTTAGCATAAACATACTCA 975859 24 100.0 41 AACATACTCA ........................ CGGGGACGGAGAGCAGCTCGTCTTCGACGAAGTGTACGAGC 975924 24 100.0 43 GTGTACGAGC ........................ ACTCCATGATACAAAAACGCCCTTTCAAATTTCCCTCCTTTAG 975991 24 100.0 42 CCTCCTTTAG ........................ GGCGACTACTACGACTACGAGTGGAAAATCTTCAACGAATAT 976057 24 100.0 50 CAACGAATAT ........................ TCAGCTAACCCATCACTCACTATTGGAAACACAACATACACCATCCCAGT 976131 24 100.0 44 CCATCCCAGT ........................ ACTACCGCATATTGACCAGCCTGACCCAACCAGAGGTTAAACAG 976199 24 100.0 40 GGTTAAACAG ........................ TTTTACCCCAGTCAAACAGGACATCTATAATGTGATACTT 976263 24 100.0 41 TGTGATACTT ........................ TTTATGGTGTGGACCGCGTACACGTACCCGCGTTTCACAGT 976328 24 100.0 38 GTTTCACAGT ........................ GTACTTTTTCCCAGTCTTCAAGACCCACGGATCCTTAA 976390 24 100.0 43 GGATCCTTAA ........................ TTTTTTAAATATAAGTTGCATACCCTTCTCCTAGGTGATGAGG 976457 24 100.0 41 GGTGATGAGG ........................ AGACAGATAATCATTCCACCCCAGAACATCACGGTGCACTT 976522 24 100.0 41 CGGTGCACTT ........................ TTCCACGGGAGTCGCCTTTTATTCTTATTTATAAATATTTA 976587 24 100.0 TAAATATTTA ........................ TGAATGGAAA ========== ====== ====== ====== ========== ======================== 25 24 42 GAAGCAATCAAGAAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [58.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [365,557] Score: 0/0.18 # # Final direction: F [4.77,0 Confidence: HIGH] >NC_017957 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 412313 37 100.0 29 CCTGCCAAAG ..................................... CGAGATCCACCTCGACGTCGAGTCCACCT 412379 37 100.0 31 GAGTCCACCT ..................................... ACCATCATCCAAACTCCGTGGGGGAGATATG 412447 37 100.0 31 GGGAGATATG ..................................... TGCGCCATTACGCGACGGAGCTTCTGGTCGA 412515 37 100.0 TTCTGGTCGA ..................................... TCCCCTCCTT ========== ====== ====== ====== ========== ===================================== 4 37 30 GTTTCCATGACCGGAGCCATTGGTCATGGCTTCAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [8,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-10.20,-9.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [132,114] Score: 0/0.18 # # Final direction: NA [0.37,0.37 Confidence: NA] >NC_017957 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 416206 37 97.3 32 GCGGGAAATA ......T.............................. CTGTTCATCGATGCCTTCAAGCTGGGCATCAT 416275 37 100.0 34 TGGGCATCAT ..................................... GCGTCGACTCCTACAACAAGGAGCACGGCCTGGA 416346 37 100.0 29 ACGGCCTGGA ..................................... CACTCAATCGCCAAAACCTATCCTCTCGA 416412 37 100.0 31 ATCCTCTCGA ..................................... ACGGGCCGTTCCCGTTCCTCGACGTCGCCAG 416480 37 100.0 31 ACGTCGCCAG ..................................... CATGACCATGACCGTTTCCGATCTCGTTCTG 416548 37 100.0 31 TCTCGTTCTG ..................................... GAGACTTCGCATGCGGTCCTCGTTTTTCGCC 416616 37 100.0 32 GTTTTTCGCC ..................................... TATACACTGTATAAGGAGGCGAAGCAGCGGAG 416685 37 100.0 AGCAGCGGAG ..................................... TCCCCCTCTT ========== ====== ====== ====== ========== ===================================== 8 37 31 GTTTCCATGACCGGAGCGATTGGTCATGGCTTCAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [8,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-10.20,-9.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [43.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [196,155] Score: 0/0.18 # # Final direction: R [0.37,1.05 Confidence: MEDIUM] >NC_017992 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 914626 30 100.0 36 AAGTGAATTA .............................. ATTGATATAACTTGCATTCATTGGTGTTAATTTTGT 914692 30 100.0 36 TTAATTTTGT .............................. ATAAGCAGATTTTTATAAGGGGGTGTGTTTTTATTG 914758 30 96.7 36 GTTTTTATTG ............T................. TTAATACCTATAATCAAGTAAAGTATATAAACGCTC 914824 30 100.0 ATAAACGCTC .............................. GCTATTGCGCT ========== ====== ====== ====== ========== ============================== 4 30 36 GTTTTTAGCCTACCTATGAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [1032,956] Score: 0/0.18 # # Final direction: F [5.78,0 Confidence: HIGH] >NC_017992 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 888587 30 96.7 36 AGTGAATGAG .................G............ TTTGTTTTTTGCTCATCATTCCATCCACTTTTTGAA 888653 30 100.0 39 ACTTTTTGAA .............................. ACTAATTAAATATATTGACGCAAAAGATTATGAAAAACA 888722 30 100.0 37 ATGAAAAACA .............................. TTATTACTGCCCCATTGTTAGCCATTGCTCCAGTTTG 888789 30 100.0 36 CTCCAGTTTG .............................. GAAGTTGTAACATTGAAATCCATGATAACTTCTGTC 888855 30 100.0 36 AACTTCTGTC .............................. GGAGAAAGAATAAAAAAACTAAGAATCCAAAAAGGA 888921 30 100.0 37 CCAAAAAGGA .............................. GTTGTAATTGTAAATATATCACCAACTGTCAAATGAA 888988 30 100.0 37 GTCAAATGAA .............................. TTTCTTATCAAATCAAATATTTTCTCATACATTTTTA 889055 30 100.0 37 TACATTTTTA .............................. GAAGCAAAGGGCTTTGTTGTAGCCTTCACAATGGAAG 889122 30 100.0 38 ACAATGGAAG .............................. TAACTTATCATTTGATTATAAAGTGATAGCATTGGTCC 889190 30 100.0 37 GCATTGGTCC .............................. TGAAATTGATATAGTAAAAAGGAGTGAAATAAATAAT 889257 30 96.7 38 AATAAATAAT A............................. AGTCGATAGTAATGGGAAAATCATATCAGGACAGGCAG 889325 30 96.7 36 GGACAGGCAG .................G............ AGATGTAATTCGTTACAAAGGATTTGCCCCTGCGGA 889391 30 93.3 36 CCCCTGCGGA .................G...G........ AAAGCTTGTCCTGCAATTGTTGCAGAAAAGTTCCCT 889457 30 93.3 AAAGTTCCCT .................G...G........ AGATTTCTAC ========== ====== ====== ====== ========== ============================== 14 30 36 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-1.30,-1.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [279,1633] Score: 0.18/0.18 # # Final direction: F [5.41,0.55 Confidence: HIGH] >NC_017958 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 504628 32 100.0 34 AAGGGGGTGA ................................ ACCTTCGACGCGGTGTATGACGCGCCATCGACAG 504694 32 100.0 35 CCATCGACAG ................................ TCGATGACGACCGAGTGGAGTGCCCCGGGTGCCTC 504761 32 100.0 33 CGGGTGCCTC ................................ CGCGGCGATCCCCGCCAGCCCGCCGGGGTGTGC 504826 32 100.0 33 CGGGGTGTGC ................................ CGAAAAAATCGAAACAAACCGCTTTACAGGGAG 504891 32 100.0 34 TTACAGGGAG ................................ CGCGGTGCTCGGTGCCGACACGCTCGGCATCGAG 504957 32 100.0 CGGCATCGAG ................................ CGCAGATGCCCGCACCGTTTTGATTTGTAATACG ========== ====== ====== ====== ========== ================================ 6 32 33 GTCGCACCCCTTGCGGGTGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [5,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [50.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [347,126] Score: 0.18/0.18 # # Final direction: F [4.95,0.74 Confidence: HIGH] >NC_017958 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 566600 36 100.0 30 CCCGCAATGG .................................... GGAGCCGGGGCGGATGTGACCAGTAAGGAC 566666 36 100.0 30 CAGTAAGGAC .................................... GAGCGAGCCATCGCAGAGTTCCTTGACGTG 566732 36 100.0 30 CCTTGACGTG .................................... GATTTGAGCGTCAAGGCCCCCAAGCTTCCG 566798 36 100.0 30 CAAGCTTCCG .................................... CCCCGCTGCGTGGACCAGCTGAGTGATCGT 566864 36 100.0 30 GAGTGATCGT .................................... TCGCTGTCCGACGCCGACCGCTACCCCCTG 566930 36 100.0 30 CTACCCCCTG .................................... ACAGCCAAGTACATCGGCGACCCGACGCTC 566996 36 100.0 CCCGACGCTC .................................... ACCTCGCTCGC ========== ====== ====== ====== ========== ==================================== 7 36 30 GCCGTGGTTTCCCTACCGATTTGCCAGTGGTAGGTT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.60,-4.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [30.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [62,60] Score: 0/0.18 # # Final direction: R [0,1.01 Confidence: HIGH] >NC_017992 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 421904 30 100.0 36 GAATCCCTCC .............................. AGCAGATTTACCTTCTTTATTAAGATTTCTAATCCA 421970 30 100.0 36 TTCTAATCCA .............................. TTAGAAAAACTCAAGAATATGGAGGTGAAATAAAAA 422036 30 100.0 37 GAAATAAAAA .............................. GCAGAAAATTCACTACCAATATTAACATTATTATGAA 422103 30 100.0 35 TTATTATGAA .............................. TTGCCATACACTTTATAACCGAATTTGTTTATAAG 422168 30 100.0 37 TGTTTATAAG .............................. TGGAGGTGCTTAAGATGGAATATTGGCTAAGTTTCAA 422235 30 100.0 36 TAAGTTTCAA .............................. CCGTATTGTTTTGTGCTACGAATAATGTCATATTTG 422301 30 100.0 37 GTCATATTTG .............................. ATGATGTCAATAAACCTTTCATAGCAATTTATCCAAA 422368 30 100.0 35 TTTATCCAAA .............................. TTTAAGAGAATGGATAAACATATTAGGCAAACCAT 422433 30 100.0 38 GGCAAACCAT .............................. AAAATTAGTAAAGGCAAAAGGCAGCATAGATAAAACAA 422501 30 100.0 37 GATAAAACAA .............................. CCAAGGTGCAGAGGATATATGGAATAGCTTGATTAAC 422568 30 100.0 36 CTTGATTAAC .............................. TGGTCCAAGTATTGCAAATTCAATAAATTTTGTAAT 422634 30 100.0 37 ATTTTGTAAT .............................. AATATGATATGTACTTTGTGAAATTACAAAATACAAG 422701 30 100.0 38 AAAATACAAG .............................. GAGTAATATTTGAACCATTTATTGCTGTAACTTTACCA 422769 30 100.0 37 AACTTTACCA .............................. TGTTCAAGAATTATATTTGCTTTCTCATCCATAGTCA 422836 30 100.0 37 TCCATAGTCA .............................. ACCCAATGAATAGTTGGGATAAAGCAGATAGTACATT 422903 30 100.0 38 ATAGTACATT .............................. ACATCCCAAGGCAAACTAAAAGGAAACTTCTCAGTCAA 422971 30 100.0 38 TCTCAGTCAA .............................. TATGTTATTATATATATAGAGTTAAGGAAAGGAGTTAT 423039 30 100.0 34 AAGGAGTTAT .............................. CAGGTTAAGCCTGCTTTATTTTTTTGTTTATTTT 423103 30 100.0 36 TGTTTATTTT .............................. TAACCTTATAAATTTTTGACTTTCCCAAATATCTAA 423169 30 100.0 37 AAATATCTAA .............................. TTTTTCTTTTTTTATACTTTTGCTTATTTATTTCTTT 423236 30 100.0 36 TTATTTCTTT .............................. TAATTTTAATTTAACTTAATTGTTTTAATTGCATTA 423302 30 100.0 36 AATTGCATTA .............................. CAAGGAAACTGCTTAAGCGAGGCAAAGCAAAAATAG 423368 30 100.0 37 GCAAAAATAG .............................. TCTCAATTTCCGATATTGGTTAGCGATAGCATCCCAA 423435 30 100.0 35 AGCATCCCAA .............................. CGTCGTCACTTGTGTTATATCAGGATAATTAAGCG 423500 30 100.0 35 TAATTAAGCG .............................. TTCTCTGGAACTAAATTTCCGCACTGTCTACAAAT 423565 30 100.0 36 GTCTACAAAT .............................. AGTTGTTGTTGTGTCACTCCTTGTTTTGTTTTAAGC 423631 30 100.0 38 TGTTTTAAGC .............................. AAACTTCAAAAACGTGATAAATTAGCAAAGAAATTAAA 423699 30 100.0 36 AGAAATTAAA .............................. ATATCTGTTGCAAGGCCTTGAACTGCTTTTTGCACT 423765 30 100.0 38 TTTTTGCACT .............................. AGACAAGAAGTTTAATGTAGACAATACGCAAAGTCCTT 423833 30 100.0 37 CAAAGTCCTT .............................. TCAGGCAGCAGACGCAGTTGTTACAGTTCCTCATAAA 423900 30 100.0 36 TCCTCATAAA .............................. CCTTTATTATAAAAAATAGCACAGGTCAAATAATGT 423966 30 100.0 36 CAAATAATGT .............................. TACAAATGATGAATTTAATACAAGAATAGAACTTGT 424032 30 100.0 36 TAGAACTTGT .............................. TCTAAATTGTCATACAATTCATTAAATTTATATTTT 424098 30 100.0 35 TTTATATTTT .............................. AAGACTAGTTGAAACTACAAACGAAGTAGGAGAAA 424163 30 100.0 37 GTAGGAGAAA .............................. ATGCTTTTAAAGAAATTGCCATTGACCTTGATAATGT 424230 30 100.0 37 TTGATAATGT .............................. TGGTAAATTATACCTTCTACATCTGGGACATTTTCAT 424297 30 100.0 35 ACATTTTCAT .............................. CGTCTGTATCCCTGCAAACTGAGAATTCCAGTCTA 424362 30 100.0 37 TTCCAGTCTA .............................. ATTCCAACAATTCATATTCTCCTCCACTTTAATATAT 424429 30 100.0 35 TTTAATATAT .............................. GAATACTTCGCTTACTCCGGGTACTTGATATTTCG 424494 30 100.0 37 TGATATTTCG .............................. ACAATGAGGAATTTGGAGAATATATAGCATTTGTAGT 424561 30 100.0 40 CATTTGTAGT .............................. CCAAATTATGCTCAAAAAATTGTAAGTGTCTATGATTCCA 424631 30 100.0 36 TATGATTCCA .............................. TAGATATGTTATTGCTAATTTTCCTATAAAGTATTC 424697 30 100.0 37 TAAAGTATTC .............................. GCTAACTGAACAACAGCAGGAAATTCACTACCAATAT 424764 30 100.0 38 CTACCAATAT .............................. GAAGAAATATTAAAAGAATCACTTTCAAAAACATTTAT 424832 30 100.0 37 AAACATTTAT .............................. GCAAAATTAGGATTTATTAGCGAAAGATTGTAAGCTT 424899 30 100.0 36 TTGTAAGCTT .............................. ATAGTAGGCTCGGCGCAAAGCCGAGCTTTATTAGGT 424965 30 100.0 36 TTTATTAGGT .............................. AAAAACATGGAAGCTTGCTCAAGAATACCTTTCTAA 425031 30 100.0 36 ACCTTTCTAA .............................. GTTCCATCCAATTTATTATATTTTACAAGATATGTA 425097 30 100.0 36 AAGATATGTA .............................. ATATTGGCAGATAATGTACAAACATCGATAAAAAGC 425163 30 100.0 37 GATAAAAAGC .............................. GGTATTTTAGCTCCTTTGGCATTATACAGAGGTCCAC 425230 30 100.0 36 AGAGGTCCAC .............................. ATTGCAGATGCAGATAAAGAAATTGTAAAAGAGGAT 425296 30 100.0 36 AAAAGAGGAT .............................. GATGCAAATAATAAAAAAGTTTCAAAATATATAAAA 425362 30 100.0 35 ATATATAAAA .............................. TCTGTATTATGCATGGCTTTGTATCTTGAAAATAA 425427 30 100.0 37 TTGAAAATAA .............................. TCGAATATTTTAAATTCGTAAAAGTCATTTAATTGTT 425494 30 100.0 37 TTTAATTGTT .............................. TTGAGGTGAAATAAATGCCAAAGCCAAAGGGTTGGAG 425561 30 100.0 AGGGTTGGAG .............................. GCGTTAGAGC ========== ====== ====== ====== ========== ============================== 56 30 36 GTTTCAATTCCTTATAGGTAGGCTAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.70,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [14,165] Score: 0.18/0.18 # # Final direction: R [0.64,4.68 Confidence: HIGH] >NC_017992 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================== ====== 609675 26 100.0 40 TATTATTATA .......................... TTAAAGGCGGTGAAAATCTATGAGTGTTTATTTCAAGTTT 609741 26 100.0 38 TTTCAAGTTT .......................... CGGGGACGAGTTCAAATCCTCCAGCGAATACTTCGTTT 609805 26 96.2 40 TACTTCGTTT ....T..................... ATACTTGTAGAAGGCGAGAGTGACGCTCAAACATTAGTTT 609871 26 100.0 41 ACATTAGTTT .......................... TTGAGCCTAAATCTATATTGTTTTCACGCCTTACTAAGTTT 609938 26 100.0 40 TACTAAGTTT .......................... CTTTTTCGGTTTCTCCGGTTTCGGCTCTACTGGTGAGTTT 610004 26 100.0 TGGTGAGTTT .......................... CCCATCCTGAA ========== ====== ====== ====== ========== ========================== 6 26 39 ATAACCCACAATGGTTCTACCTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.54%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.30,-0.90] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [300,137] Score: 0.18/0.18 # # Final direction: F [0.45,0 Confidence: MEDIUM] >NC_017992 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 875551 30 100.0 37 AAGTGAACGA .............................. AATTGTCAGAATTTTTTAGCTGTCAATTGTGCGAATT 875618 30 100.0 36 TGTGCGAATT .............................. TAGTTATTCCTCCAGAAATACCCAACAACGAATTAG 875684 30 100.0 39 AACGAATTAG .............................. TCTAAAAATAACATATCTGATAACAAATTCTCCGAATTT 875753 30 100.0 38 CTCCGAATTT .............................. TGGGTATAGTTAGAGGTCTTAATTATACCCATGATAGG 875821 30 100.0 36 CCATGATAGG .............................. ATATCTTTTTCTTTTGCTCTCAACATCAACTATAAA 875887 30 100.0 36 CAACTATAAA .............................. TTCTAAGCCCAGCGTTTCGCCTCTACGTGTGCCTAA 875953 30 100.0 36 GTGTGCCTAA .............................. AACGTTGGGAGTGAAATAAAATGACTTATCAAGAAT 876019 30 100.0 39 TATCAAGAAT .............................. TCATATAAAACCTCTGCAACTTGTTTAGGGGAATTTAAA 876088 30 100.0 38 GGAATTTAAA .............................. TTGGGCTTTGTATGGAGTAGAGAAAAACAAAAATGGTA 876156 30 100.0 36 AAAAATGGTA .............................. TACTCTTCCCCTTCATTCCATAGCATCTCCCAATGT 876222 30 100.0 36 CTCCCAATGT .............................. ACTGCATTTTCATAATCAATGTTTTTTGCGTTTTGA 876288 30 100.0 36 TGCGTTTTGA .............................. ACTGCATTTTCATAATCAATGTTTTTTGCGTTTTGA 876354 30 96.7 37 TGCGTTTTGA .....................A........ AAATTATTTTCTTCATAATTAAATCCTCCATTCTCCA 876421 30 100.0 38 CCATTCTCCA .............................. AGTTTTATAAATTTTGTTAAAAAACAAGATTTAGGGAA 876489 30 100.0 36 ATTTAGGGAA .............................. AAAATAAAGGAGGTAACTCAAAATGGCACAAATTGG 876555 30 100.0 37 CACAAATTGG .............................. TCAGATACAGAATTACGTCTTAATCTCCAGGCTGGGT 876622 30 100.0 36 CAGGCTGGGT .............................. TTAGGCATAATTATCAATCCTCCAAAATTTTTATTT 876688 30 96.7 ATTTTTATTT .......................A...... GCTATATCAT ========== ====== ====== ====== ========== ============================== 18 30 36 GTTTTTAGTCTACCTATGAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.80,-0.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [363,270] Score: 0/0.18 # # Final direction: F [5.55,0 Confidence: HIGH] >NC_017998 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 35940 29 100.0 35 NNNNNNNNNN ..........C...C.A..C...CA..C. AAACATGTAAAAAAAGTAGAGATAAGTTATTTCGA 36004 29 100.0 37 NNNNNNNNNN ..........C.................. TCGGTTGTTTATAGAAGTAATCGCCAGAATATACCCA 36070 29 100.0 36 NNNNNNNNNN ............................. AGTAGCAATGTGACAAGCAGTAGTGCAACTTTGACA 36135 29 100.0 37 NNNNNNNNNN ............................. TAGCTTACTGTTTAAGAGCAGTTGTGAGATACTTAGA 36201 29 100.0 36 NNNNNNNNNN ............................. TCTTGGTATGTCGCTTAACACATTTGCAGCCAATTT 36266 29 100.0 37 NNNNNNNNNN ............................. TACCATCTTTTATATAAGGCATAGCTCCTAACTGCTC 36332 29 100.0 38 NNNNNNNNNN ............................. AATGAGCCAGAGGCTGAAATGTTGGTCGAAAAAATTTC 36399 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 8 29 36 CTTCTAAACCTACATAGGATATTTCAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.97%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.60,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [66.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [316,115] Score: 0.18/0.18 # # Final direction: R [0.55,0.68 Confidence: LOW] >NC_018001 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 973322 24 100.0 42 NNNNNNNNNN .CC..................... TAAAGAAAAGCTTGACGAGGCAATGCTCGAGCAGATGATTCT 973388 24 100.0 40 NNNNNNNNNN ........................ CTATAAACATACTCCACAGAGCTGCAACGCAAGAGATGTT 973452 24 100.0 40 NNNNNNNNNN ........................ GAGGGCGGTCTCAGTCAAGAAAGAGACGTACGAGAAGCTC 973516 24 100.0 45 NNNNNNNNNN ........................ TCAATTAACTTATATTTTTTCTGTGCTTGGTTTTGGGTTTGGGTT 973585 24 100.0 43 NNNNNNNNNN ........................ TATAGTAATTCAAGCAGTCAGAGATGTAAAACCGCCGAGCAAA 973652 24 100.0 41 NNNNNNNNNN ........................ GCTGCGAGAAACGAGGCCAGTGAGCTGCTCGGCAAAGTGAC 973717 24 100.0 47 NNNNNNNNNN ........................ ATTTAGAGCTTAAGAAGCAGAGGCTGAATCTGTTGATCGAGCAGATG 973788 24 100.0 43 NNNNNNNNNN ........................ GCGAGGGCGTCTCAGCTAGTGTTGACGTGTATCAAGCTAAATT 973855 24 100.0 44 NNNNNNNNNN ........................ AAAATGATATTCGTAAACCGCCGGATTTCTACGATTTCCCAGGC 973923 24 100.0 43 NNNNNNNNNN ........................ CATTTAATTTAATAGTCATATAGAATGATACATTAGCGAGTGG 973990 24 100.0 44 NNNNNNNNNN ........................ TTCTTTTCAACGTATTCTCCGCCATTATAGCCGTACGTGTTCTC 974058 24 100.0 44 NNNNNNNNNN ........................ CTCGCTATGAGCTGAGCGGTGATCGCAACTGGCAGCGTGAAATC 974126 24 100.0 41 NNNNNNNNNN ........................ GTGATACTAGTTAATATTCTAACATTTGCCGCGCGCAGAAA 974191 24 100.0 39 NNNNNNNNNN ........................ TTCAGGGGTTTATAAACTTTTACGTGGAGGGATGGGGGG 974254 24 100.0 42 NNNNNNNNNN ........................ AATTACTTCTAATTATAAGATGCCCGTGTCTTCTATATAACA 974320 24 100.0 48 NNNNNNNNNN ........................ TCCCTCAACACAAGCATCTGCCGAAGCACTCTACTGCAGTTCACTTCG 974392 24 100.0 45 NNNNNNNNNN ........................ GACGAGCTTATACAGATTCTAGAGCCTAGCGAAAACAATGAAAAC 974461 24 100.0 44 NNNNNNNNNN ........................ GCTCACAGCATGAGAAGAGCGGGGCAAGCATAGACACTATCCCG 974529 24 100.0 40 NNNNNNNNNN ........................ TACAGGGCACCCCGTCTTCGTGAAGAAACTCGCGTAAGAG 974593 24 100.0 40 NNNNNNNNNN ........................ TCTTTCCATTGCTATTATTGATCAGCGCAATGCGAGACCT 974657 24 100.0 44 NNNNNNNNNN ........................ TTCACTGTGAATTGAAGTAGTTCTATTCACTGTGAATGGAGACA 974725 24 100.0 42 NNNNNNNNNN ........................ TGCGGGCCAGGGCGAGGTGAATAGAATGAGCGCTCTCCCCGC 974791 24 100.0 37 NNNNNNNNNN ........................ TGTACGAGTTAAAGACAGATGATGTTATTTTTCTCGA 974852 24 100.0 44 NNNNNNNNNN ........................ TATACTCTTCCAAGTCCGTTCATAGTTGTTTCTGCTGTGGAGAC 974920 24 100.0 1 NNNNNNNNNN ........................ NNNNNNNNNN ========== ====== ====== ====== ========== ======================== 25 24 42 CTTTCAATTCTTTCTATTGTATTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [151,318] Score: 0.18/0.18 # # Final direction: R [0,5.36 Confidence: HIGH] >NC_018002 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 934455 30 100.0 37 NNNNNNNNNN .............................. CTAATCCACAAAGGGAATGTTTGCTGTTGCCATTCCT 934522 30 100.0 35 NNNNNNNNNN .............................. AAGCGTGTATGATAATTGGAAAACTGGCAAGGTAA 934587 30 100.0 35 NNNNNNNNNN .............................. AATAGGCGAGGACGATTTGAAAAATGGTCGTATGG 934652 30 100.0 36 NNNNNNNNNN .............................. CTAGGGCTTGATTTGGTTTTTGAGGCAACGGATAAG 934718 30 100.0 36 NNNNNNNNNN .............................. TGTTTTACACCGTTTCTTAAATGTTTTAACGCACTT 934784 30 100.0 35 NNNNNNNNNN .............................. TTCTTACATCTCCTCAAACATTATACAACCGCTAA 934849 30 100.0 36 NNNNNNNNNN .............................. CCCTCCATGCTTTTGCTAGACCAACATCGGCAAGAG 934915 30 100.0 37 NNNNNNNNNN .............................. AGATAATGATTGGGCTGTTGAAGAAGAAAAAAGACCT 934982 30 100.0 36 NNNNNNNNNN .............................. AGGTTGCTAACATCGGACGTAAACATGTATAAAAAT 935048 30 100.0 34 NNNNNNNNNN .............................. ATTTAATAATCAATCTTTTCTGTTCTAAGCTTAA 935112 30 100.0 35 NNNNNNNNNN .............................. TGAATACAGTCCTTTTAAAAATGTAGTGCGCTTTG 935177 30 100.0 37 NNNNNNNNNN .............................. TGGTATTCGCCATCCGCACCATTGAGGATTACATCAA 935244 30 100.0 36 NNNNNNNNNN .............................. AATTAGACTAGAGGCAGAGGCGCAATTTGCAACCGC 935310 30 100.0 37 NNNNNNNNNN .............................. ATACGTTCGACAGCACAAAGATGGAGCACTTAGCAGT 935377 30 100.0 34 NNNNNNNNNN .............................. TTTGGAATTTCGTTGGATAGCTTAGTTCCACTTG 935441 30 100.0 36 NNNNNNNNNN .............................. ATATATCCAAAATCTCCAACTTCCACTGGTAAATTT 935507 30 100.0 34 NNNNNNNNNN .............................. AATAACGCAACCCTAATCCCAAACACTTTAGTAA 935571 30 100.0 36 NNNNNNNNNN .............................. GGGCTTCCACCAATGTAAAAGCCACCGACCGCCAAC 935637 30 100.0 34 NNNNNNNNNN .............................. AATACAAAGACGGAAGCACAAAAATAGCAATTAG 935701 30 100.0 35 NNNNNNNNNN .............................. ACGGTCTCGCCGTTGTAGAACTTAGATAAGGAGAA 935766 30 100.0 36 NNNNNNNNNN .............................. TTGATGAGGCGCACCTTGTAAATAATAAAGCAGAAA 935832 30 100.0 36 NNNNNNNNNN .............................. TTACTGGTTGTGTTCTGATCCCTGCAAAAAACTTTC 935898 30 100.0 35 NNNNNNNNNN .............................. AGATTTTGATAAACAAGATATAAAGTGTGTAACAA 935963 30 100.0 36 NNNNNNNNNN .............................. AAAAATCGCTGAGGAACTTTTCATTTTTGGAACCAA 936029 30 100.0 36 NNNNNNNNNN .............................. TTCATATCGTCTTCCACGTCTGGGTCATAAAGACAA 936095 30 100.0 37 NNNNNNNNNN .............................. CCTAACATACCCAACTTTACAGCTAAATTGATTGCTA 936162 30 100.0 35 NNNNNNNNNN .............................. GAACGAACTCCATCAAGTTTTGAATTTGTAGCATT 936227 30 100.0 36 NNNNNNNNNN .............................. CCTTACGCTGCTATTTTCCCTTTTGCTTTCAACTCT 936293 30 100.0 36 NNNNNNNNNN .............................. AAGACATTACGGGGAGTACAGAAGCTAATAAGATTT 936359 30 100.0 34 NNNNNNNNNN .............................. CACTTAACTACAACGTCAATGCGTTGACTATAAG 936423 30 100.0 36 NNNNNNNNNN .............................. ATAGAAAACCCCTATATTTTTGAGAAAATTCAATAG 936489 30 100.0 35 NNNNNNNNNN .............................. CCTAATCCATTCTTGAGTAAAAAGATTAAAGACCT 936554 30 100.0 35 NNNNNNNNNN .............................. ATTATTAGCAGTGTTGCAACGTTGCTTGACACTGT 936619 30 100.0 37 NNNNNNNNNN .............................. TCGAGTACGGCTCGCTCACCATCACTGAGGCGTGGTT 936686 30 100.0 36 NNNNNNNNNN .............................. TGGCAAGGAGAAGCTCTCTCTTATACCGTGCAATAC 936752 30 100.0 36 NNNNNNNNNN .............................. CGTGCAATGTCTCAGTATGTCTTAGCCTATGATGTT 936818 30 100.0 36 NNNNNNNNNN .............................. GTTGGTAAATACGCTTGGTTATGTAAATAAGTGATG 936884 30 100.0 34 NNNNNNNNNN .............................. AATCCTCTAAACTTTATTCTTGCTGGGTATGCTT 936948 30 100.0 35 NNNNNNNNNN .............................. TCAAGAAGACCTAGGTTAAGAAGCTGGAGTCTTGC 937013 30 100.0 36 NNNNNNNNNN .............................. CACTAACGGTTGCCTCTTCTTCAACTGCTTCAGAAA 937079 30 100.0 36 NNNNNNNNNN .............................. AGAGAAGCACCTTTTAAATATAAGTTTTCCCACTCG 937145 30 100.0 34 NNNNNNNNNN .............................. GTACCTATATCTTTTGAGAGTGAGTTAGACGTAG 937209 30 100.0 1 NNNNNNNNNN ...............A.A.ACGTGACG.TA NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 43 30 35 CTCGAACCGACACAAGATTTGTATTTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-2.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [167,312] Score: 0/0.18 # # Final direction: F [0.41,0.37 Confidence: LOW] >NC_018010 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================================== ====== 3442634 46 100.0 30 ATATCTTGTT .............................................. CATTTCTTTGAATACGATTGCGAAGAAGTG 3442710 46 100.0 30 CGAAGAAGTG .............................................. ATATTTGGGGTATGGCTGGAGGAAGACCTA 3442786 46 100.0 30 GGAAGACCTA .............................................. GATTTCAGGAGTTATCAAGGCTTGGTAAAG 3442862 46 100.0 29 CTTGGTAAAG .............................................. TTTCGGAGTATCTTCAAAGATTTTAGCAA 3442937 46 100.0 30 ATTTTAGCAA .............................................. TTAATTGATGCTGACAAGCGAGTCTACAGG 3443013 46 100.0 30 AGTCTACAGG .............................................. TTCTTATTTGAGCTAATTTTATCAGCTTCT 3443089 46 100.0 ATCAGCTTCT .............................................. ATACCCCACG ========== ====== ====== ====== ========== ============================================== 7 46 29 GTTGTGAATTGCTTTCAAATTGATATCTTCCCAAGGGAATCACAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.87%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.30,-2.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1858,149] Score: 0.18/0.18 # # Final direction: F [0.55,0 Confidence: HIGH] >NC_018011 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================== ====== 2095109 18 100.0 45 GTTCTTAATG .................. CTTGAAATATTGATTCGGGGGCAAATTCCCCTCTTTTTTATGGTC 2095172 18 100.0 60 TTTTATGGTC .................. TTTTTTGTATTGCAACATGCTGATATTTTTGAAATAACATAAGATATTTGGGGGTGTTTG 2095250 18 94.4 64 GGGGTGTTTG .................A TATTCTATTTGTAATTTACTGATATACATATTTTTATGTATATTTTTTGAGTTTTGCTCTCATC 2095332 18 94.4 TGCTCTCATC A................. CTTCTATTAC ========== ====== ====== ====== ========== ================== 4 18 56 TGTGTTACCATTTTTGCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [424,446] Score: 0/0.18 # # Final direction: F [0.41,0 Confidence: MEDIUM] >NC_018012 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1161625 29 100.0 32 NNNNNNNNNN C...TC..................A.CA. CACACCAACGGTATTAGATACCCAGTGGCACG 1161686 29 100.0 31 NNNNNNNNNN C.ATTC....................... CGCCGATTCGCGCGTCCTTTTTGAACCAATT 1161746 29 100.0 32 NNNNNNNNNN ........G.................... GTCCAGGTCGGCACTCATCGTGACGGTGCCGA 1161807 29 100.0 32 NNNNNNNNNN ............................. AGCCGAGATTCTCGCCAATGACCTGGAAGTCG 1161868 29 100.0 32 NNNNNNNNNN ............................. GGGGCGATGATCGACGCTCTGTATCAGACCGA 1161929 29 100.0 32 NNNNNNNNNN ............................. ACATCAAGGGCGTGCTGGCAGCGACAGACTTG 1161990 29 100.0 32 NNNNNNNNNN ............................. GTTTTGTCTGCGTTGTCTACGTTTTTAAGACG 1162051 29 100.0 32 NNNNNNNNNN ............................. CGAGTTCAAAGAATTGATCTTTCTCCGCTTCG 1162112 29 100.0 32 NNNNNNNNNN ............................. TATACGGCCGCTCCCGAGCCGGTCAAGGTGGC 1162173 29 100.0 32 NNNNNNNNNN ............................. CGCGGTGATGACAGCACGAGAAATTTACGAGC 1162234 29 100.0 32 NNNNNNNNNN ............................. GATAAATTGCACGTCAAGCACGCAGGGACAAT 1162295 29 100.0 32 NNNNNNNNNN ............................. TCAATACACCTTTTAGCGTGCCGTCCTCGTAC 1162356 29 100.0 32 NNNNNNNNNN ............................. CGACAGGCGCGGAACAGGCTGATGCGGGTGTG 1162417 29 100.0 32 NNNNNNNNNN ............................. CACACGGATTTCTGAGCCCTTGCCGGTCTCGC 1162478 29 100.0 32 NNNNNNNNNN ............................. CAGGGCGGCGAATTCCTTCTTGACCATCATCG 1162539 29 100.0 32 NNNNNNNNNN ............................. AGAAATCCGATGCCACGTAAACACCGACTTAT 1162600 29 100.0 32 NNNNNNNNNN ............................. GATAAATTGCACGTCAAGCACGCAGGGACAAT 1162661 29 100.0 32 NNNNNNNNNN ............................. TTCGGTTTCGCGCGCGGCAATTGCGCGATTTC 1162722 29 100.0 32 NNNNNNNNNN ............................. GCCGTCCCGGTCGCTCCGGGACGGTTTTTTTA 1162783 29 100.0 1 NNNNNNNNNN A............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 20 29 31 GGGCCTATCCCCGCGAGCGCGGGGGAACC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [4,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [864,68] Score: 0.18/0.18 # # Final direction: R [0.55,0.68 Confidence: LOW] >NC_018012 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1161692 28 82.1 32 CACGCGATTC -----....................... CGCCGATTCGCGCGTCCTTTTTGAACCAATTG 1161752 28 96.4 33 GAACCAATTG .......G.................... GTCCAGGTCGGCACTCATCGTGACGGTGCCGAG 1161813 28 100.0 33 CGGTGCCGAG ............................ AGCCGAGATTCTCGCCAATGACCTGGAAGTCGG 1161874 28 100.0 33 TGGAAGTCGG ............................ GGGGCGATGATCGACGCTCTGTATCAGACCGAG 1161935 28 100.0 33 TCAGACCGAG ............................ ACATCAAGGGCGTGCTGGCAGCGACAGACTTGG 1161996 28 100.0 33 ACAGACTTGG ............................ GTTTTGTCTGCGTTGTCTACGTTTTTAAGACGG 1162057 28 100.0 33 TTTAAGACGG ............................ CGAGTTCAAAGAATTGATCTTTCTCCGCTTCGG 1162118 28 100.0 33 TCCGCTTCGG ............................ TATACGGCCGCTCCCGAGCCGGTCAAGGTGGCG 1162179 28 100.0 33 CAAGGTGGCG ............................ CGCGGTGATGACAGCACGAGAAATTTACGAGCG 1162240 28 100.0 33 TTTACGAGCG ............................ GATAAATTGCACGTCAAGCACGCAGGGACAATG 1162301 28 100.0 33 AGGGACAATG ............................ TCAATACACCTTTTAGCGTGCCGTCCTCGTACG 1162362 28 100.0 33 TCCTCGTACG ............................ CGACAGGCGCGGAACAGGCTGATGCGGGTGTGG 1162423 28 100.0 33 GCGGGTGTGG ............................ CACACGGATTTCTGAGCCCTTGCCGGTCTCGCG 1162484 28 100.0 33 CGGTCTCGCG ............................ CAGGGCGGCGAATTCCTTCTTGACCATCATCGG 1162545 28 100.0 33 CCATCATCGG ............................ AGAAATCCGATGCCACGTAAACACCGACTTATG 1162606 28 100.0 33 CCGACTTATG ............................ GATAAATTGCACGTCAAGCACGCAGGGACAATG 1162667 28 100.0 33 AGGGACAATG ............................ TTCGGTTTCGCGCGCGGCAATTGCGCGATTTCG 1162728 28 100.0 33 CGCGATTTCG ............................ GCCGTCCCGGTCGCTCCGGGACGGTTTTTTTAA 1162789 28 100.0 GTTTTTTTAA ............................ TCTTGCAGTT ========== ====== ====== ====== ========== ============================ 19 28 32 GGCCTATCCCCGCGAGCGCGGGGGAACC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [4,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [38.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [931,63] Score: 0.18/0.18 # # Final direction: R [0.55,0.68 Confidence: LOW] >NC_018012 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 480145 29 100.0 32 NNNNNNNNNN ............................. TAGGAGGACAGGACTCGCCCTTACGCGGCGAT 480206 29 100.0 32 NNNNNNNNNN ............................. TGACGGCGACGGGCGGGGCGATTGGGCCTGCT 480267 29 100.0 32 NNNNNNNNNN ............................. CTATGACGATGCCGTCGACGCGATCAACGCGG 480328 29 100.0 32 NNNNNNNNNN ............................. ATCCAATCTTGGTCGTCAACGCGTTCATGTCT 480389 29 100.0 32 NNNNNNNNNN ............................. GTAAGAGCCTCCGTTATTCGCCGTGATATTTA 480450 29 100.0 32 NNNNNNNNNN ............................. GCTATCAGTGGATGGGCGCCGGCGGCAATGTT 480511 29 100.0 32 NNNNNNNNNN ............................. GCAAGGGCACCGGCGAGGTCGCCGACCAGATG 480572 29 100.0 32 NNNNNNNNNN ............................. ATTCTCGACTCGAATCGTTGCTGCTCGCGGAC 480633 29 100.0 32 NNNNNNNNNN ............................. TTCCGGCCCCATCTCGCCGACAATTCGCAAGC 480694 29 100.0 32 NNNNNNNNNN ............................. TGACCTGCATGATTTTCCCGTCAAAGCGCATC 480755 29 100.0 32 NNNNNNNNNN ............................. GTCGGCGCCGGATTCGGGCGCGTGCGTCGATG 480816 29 100.0 32 NNNNNNNNNN ............................. TCTTCAGCCATCTTGCGCGCCTCTCGCATGGC 480877 29 100.0 32 NNNNNNNNNN ............................. CTTTCGACGGCATGGCGGACGTCTCCAACGCC 480938 29 100.0 32 NNNNNNNNNN ............................A TGACCGCCGAAAAGGAAGACGCGCGCATGACC 480999 29 100.0 32 NNNNNNNNNN ............................. CTCGAACCCGGCATGCTTCCAGTCACCGGAGA 481060 29 100.0 32 NNNNNNNNNN ............................. TCCAGTTCGTAGCGCCGCATCGTCACCACGTC 481121 29 100.0 32 NNNNNNNNNN ............................. GTGCCAGCCTTGACCGCCTCGAGCACGTCAGG 481182 29 100.0 32 NNNNNNNNNN ............................. CCCCGTTGCCGGGGCGGTGTGAGTTATGCGGA 481243 29 100.0 32 NNNNNNNNNN ............................. GTCTCACCGGACATGTGGGCGCAGATCGAGCG 481304 29 100.0 32 NNNNNNNNNN ............................. TCTTCAGCCATCTTGCGCGCCTCTCGCATGGC 481365 29 100.0 32 NNNNNNNNNN ............................. CTCTTCCGCCTGAACCTTTCCCTTTGACATAA 481426 29 100.0 32 NNNNNNNNNN ............................. ATATGGCTCATGTCGCTGATACGACCGGCCAT 481487 29 100.0 32 NNNNNNNNNN ............................. GAACCGGCGGCCGTGTTCGCACGATCAACGCG 481548 29 100.0 32 NNNNNNNNNN ............................. CCTTTCAATCGATGGCGGCCGCCTCAAAGGGG 481609 29 100.0 32 NNNNNNNNNN ............................. CGGATGCCAGGCTTCTTCATCAAGCGGACGCT 481670 29 100.0 32 NNNNNNNNNN ............................. CTGGCGCTGTATCAGAACACGGCAGCCTGAGC 481731 29 100.0 32 NNNNNNNNNN ............................. CTTTTCTTAGAGATATGGGCGAGCGACCTGAA 481792 29 100.0 32 NNNNNNNNNN ............................. CTGCCCGACGGCAAGCTGTCGTTTCCGTATGA 481853 29 100.0 32 NNNNNNNNNN ............................. GCGCGCGGGTGCATGCTGCTGCTGGTCGAGAT 481914 29 100.0 32 NNNNNNNNNN ............................. CTCGGCGGGAATATCGGCAATCGCATAATCGT 481975 29 100.0 36 NNNNNNNNNN ............................. CGAAGTGATGAAGGATGGCGAGTAGATCGGCGGTAA 482040 29 100.0 32 NNNNNNNNNN ............................. CCGGATTGATGGACGTGGCCACCGTCGCGGCG 482101 29 100.0 32 NNNNNNNNNN ............................. GTGGCGAATTCGAGAGGGTTAGGCGGCTGAGG 482162 29 100.0 32 NNNNNNNNNN ............................. AACGAGGGTGCTTACCCGGATCGCATTCTGAT 482223 29 100.0 32 NNNNNNNNNN ............................. GCGCTTGGCGGAAACGTTTTCAAGGAATCCGG 482284 29 100.0 32 NNNNNNNNNN ............................. ACTGGCGAGACCCATGTATTTACCGGATCAAA 482345 29 100.0 32 NNNNNNNNNN ............................. GCCGGGGATCGCCGCGCAGGCGTCGCGAATCG 482406 29 100.0 32 NNNNNNNNNN ............................. ACCGAAGCCAGCACCGAGGAGATGGCCCGCTT 482467 29 100.0 32 NNNNNNNNNN ............................. GCCCCTAGGGGAATCCGATGAAAACCACCGCC 482528 29 100.0 32 NNNNNNNNNN ............................. GACATGGTGCGGGAAAGCGTTTCTGGGTGCTG 482589 29 100.0 32 NNNNNNNNNN .........................G... CCGCGCAGCTCCACCTGAACGAAGTCGGCGAC 482650 29 100.0 32 NNNNNNNNNN ............................. ACCCCGCGACCGGCGAAACCCACATGGCCCTC 482711 29 100.0 32 NNNNNNNNNN ............................. TTGTCTGCCGCCGTGAGCGCGGCGGCAATCTC 482772 29 100.0 32 NNNNNNNNNN ....................ATGAGCGTT GAACGACGCCGAAGAGGTGCACCGCGAACATC 482833 29 100.0 1 NNNNNNNNNN ....................ATGA.C..T NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 45 29 32 GTGTTCCCCGCGCTCGCGGGGATGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [1-16] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [56.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [95,21] Score: 0.18/0.18 # # Final direction: F [0.86,0.37 Confidence: MEDIUM] >NC_018012 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================================== ====== 4879481 38 100.0 35 GGCGCGAGCA ...................................... TGCGGTGACCTTGGCGATGTTGCCGGTCAGTGCGC 4879554 38 100.0 36 GTCAGTGCGC ...................................... CGTCCTTCGTTCGGAGAGCACGGAAATCTTCGTGTT 4879628 38 100.0 35 TCTTCGTGTT ...................................... GAAGCGCCTTATGGATACTCCTGCCTTGGCTTCGA 4879701 38 100.0 TTGGCTTCGA ...................................... AGGGCAATCGC ========== ====== ====== ====== ========== ====================================== 4 38 35 GTTTCAATCCTTGTTGTATTGGATTGGGTGCTGCAGCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.63%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.40,-2.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [38.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [493,14] Score: 0.18/0.18 # # Final direction: R [0.55,4.77 Confidence: HIGH] >NC_018012 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================================= ====== 4881664 39 100.0 36 GCCATCCTTC ....................................... GTCCTCCCCGAGGAACAGATGCGCTTTGATTTCAAC 4881739 39 97.4 34 TGATTTCAAC A...................................... CCCCCAAGTGGTCGAGGATCTGTATGAAATCCTC 4881812 39 100.0 33 TGAAATCCTC ....................................... ATGCGCTTGACGCCTTGGACGCATCAGACAGGA 4881884 39 100.0 TCAGACAGGA ....................................... CGCATTTTGCC ========== ====== ====== ====== ========== ======================================= 4 39 34 GCGTTTCAATCCTTGTTGTATTGGATTGGGTGCTGCAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:51.28%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.10,-5.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [730,313] Score: 0.18/0.18 # # Final direction: R [0.55,5.18 Confidence: HIGH] >NC_018012 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 4881079 37 100.0 36 ACATGGCACG ..................................... CTCGCCCGGGCATTTTCAAGAAGGACACTCCCCATG 4881152 37 100.0 36 ACTCCCCATG ..................................... TGGTCTGAGCGTTCGGCGTAGCGGTTGACGCGCGAC 4881225 37 100.0 37 GACGCGCGAC ..................................... CCTCCGCTGGGACCATGAAGATTCCGCTTCTGATCGC 4881299 37 100.0 38 TTCTGATCGC ..................................... TTTCCCACGCGGTCGGAACCCAGGCGCCATCACCGAAG 4881374 37 100.0 37 ATCACCGAAG ..................................... GCCGAACCGAGACCAGACAGGAGAACGAGATGCACGT 4881448 37 100.0 36 AGATGCACGT ..................................... CCCATGACAGACCCGTATTGAGCAGAGATATCAGCA 4881521 37 100.0 GATATCAGCA ..................................... ACCTCGCCGAC ========== ====== ====== ====== ========== ===================================== 7 37 36 GTTTCAATCCTTGTTGTATTGGATTGGGTGCTGCAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.05%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.40,-2.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [145,678] Score: 0.18/0.18 # # Final direction: R [0.37,4.95 Confidence: HIGH] >NC_018014 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================== ====== 1418865 22 100.0 19 NNNNNNNNNN ..............G......C ACGCAGAAGAGTCGTAAGT 1418906 22 100.0 20 NNNNNNNNNN ............T......... GCAGCGGGAAAATTCCGCCC 1418948 22 100.0 20 NNNNNNNNNN .....C................ GCAGCGAGAAAATTCCGCAC 1418990 22 100.0 20 NNNNNNNNNN ............A.G....... CATGCAGAAGAATCATAAGT 1419032 22 100.0 20 NNNNNNNNNN ...................... GCAGCAAGAAAATTCCGAAC 1419074 22 100.0 20 NNNNNNNNNN ..............G....... CATGCAGAAGAATCATAAGT 1419116 22 100.0 20 NNNNNNNNNN ...................... GCAGCGAGAAAATTCCGAAC 1419158 22 100.0 1 NNNNNNNNNN ..........G.......TCGC NNNNNNNNNN ========== ====== ====== ====== ========== ====================== 8 22 19 GGCTTTAGCCACCGAGATAGAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [7,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [4-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1430,22] Score: 0.18/0.18 # # Final direction: F [0.96,0 Confidence: HIGH] >NC_018015 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 100516 29 100.0 38 AAACCCTCCC ............................. GTGATGACGCCCCACCACATCTTTTTAGTTTATGTTAC 100583 29 100.0 37 TTTATGTTAC ............................. GGGCTTCATGAACGGCTCATTCTCCTTTCAATTCTTC 100649 29 100.0 39 TCAATTCTTC ............................. CAGCTTTGAAATGCTCGCGAGGAAGTTCGACATCCCCAC 100717 29 100.0 37 ACATCCCCAC ............................. CTGGGTTGGCGTCAAGATAATACAATGCCCCCTCCCC 100783 29 100.0 39 CCCCCTCCCC ............................. TGTGCTGTGGGCCTTTGCAAAGACTCTCTCCTATGTCAC 100851 29 100.0 38 CCTATGTCAC ............................. CTGCCTACCGTAACGGCCTTGGTAAACTGCGTTTCCCC 100918 29 100.0 36 GCGTTTCCCC ............................. GAAGCGGTTGATTTGGCTCAACCGCTCATCAACGTA 100983 29 100.0 38 CATCAACGTA ............................. GCGAAAATTTTTGATTTTTTGGCACAGAAAGTTAGCAA 101050 29 100.0 35 AAGTTAGCAA ............................. ACACCACGGTCGCCCACCTTCCGCTCAATCCTGAA 101114 29 100.0 38 CAATCCTGAA ............................. TCAAAAACAAAACCACCGTTCCCGCCGTTCCCCTTATA 101181 29 100.0 36 TCCCCTTATA ............................. CCATCATAACCGCCATACTACTCCCCAACATAACCA 101246 29 100.0 38 AACATAACCA ............................. TAGCGGCTGACCCACAAGTTAAAGCCGCTAATCTGGTA 101313 29 100.0 39 TAATCTGGTA ............................. CTCTCTTCTTATAAAAGGTTTACTTCCAGTGGAACCACA 101381 29 100.0 38 TGGAACCACA ............................. TCCATGGCCCCGGCCAATGCGATGAACGCGTCGGCCAA 101448 29 100.0 37 CGTCGGCCAA ............................. AGAGATAAAGGGGAAAGCCGCTACAAACCTGGAAAAA 101514 29 100.0 36 CCTGGAAAAA ............................. ACCGCCGACTACAAGTTCTACATCGTGCCGAATCCA 101579 29 100.0 39 GCCGAATCCA ............................. AAAATCCTTGAGCGCGTGTTCAAGGAGGCAGTGAAGACA 101647 29 100.0 38 AGTGAAGACA ............................. CCGCTATGGCGAGTATCCCTACACTTGCCTGCAACTCA 101714 29 100.0 39 CTGCAACTCA ............................. GGGCGCTCAAGACTGCTTTATGATAAAACCCCGATACTA 101782 29 100.0 39 CCCGATACTA ............................. GCGCAGTAAAAACAGTGCCCGACTGCCTGGAATAATGCA 101850 29 100.0 37 GAATAATGCA ............................. CTCTGGCCTTGGCCTTATCTTTAACCTTCAGCTTCAA 101916 29 100.0 36 TCAGCTTCAA ............................. TTCCGTTCTGCTTGAAGTATTCAACGATAACTTCAA 101981 29 100.0 38 ATAACTTCAA ............................. AGGACGTTGAGCGGGTGAGGGAACTGAGGGAGACTTTA 102048 29 100.0 38 GGAGACTTTA ............................. AGCCTCTTATGCACTGAACCAGAATTCTCCAGAATTCA 102115 29 100.0 39 CCAGAATTCA ............................. AAAATCCTTGAGCGCGTGTTCAAGGAGGCAGTGAAGACA 102183 29 100.0 37 AGTGAAGACA ............................. GCTTAAGTAGGCGTTGCCTTCTTTTGTTACATAATAA 102249 29 100.0 37 TACATAATAA ............................. ACCTTATCTCTCTCACTCATTCTCGCTCACCTCTCGA 102315 29 100.0 38 CACCTCTCGA ............................. CATCTTGCCGTCTTTCTGCTAAGTTGGTGGCAAATTCA 102382 29 100.0 34 GGCAAATTCA ............................. CGAGACAGACGTTCCAAATAAAATGGAACAGAAA 102445 29 100.0 39 GGAACAGAAA ............................. TTCTGGAGGTTTGGACTAAGGAGGCTGACGGCCACCCCA 102513 29 100.0 37 GGCCACCCCA ............................. GACCATCGCCGCAAGCCTGCCCTTGTGTGCTTCGTCA 102579 29 100.0 41 TGCTTCGTCA ............................. ACTAAAACCGCCTCGCTCGATTGGGTTTGTGGTGAAAGTGA 102649 29 100.0 38 GTGAAAGTGA ............................. GGCCTGGAGGAGTTTGCAGGCGCCGTAAGTTCCGTAGA 102716 29 100.0 38 GTTCCGTAGA ............................. CTATGACGTCGAGCTTTTTGATTTTTGTCGGGTCGAGA 102783 29 100.0 38 CGGGTCGAGA ............................. TCGGAGAGTGGGAGGGCTTTCTCGCGGTAACGGATAGA 102850 29 100.0 39 AACGGATAGA ............................. GCTGAGCATGTGGGTAAGCTGGTTGAGGTGAAGGGTCGA 102918 29 100.0 38 GAAGGGTCGA ............................. ATTCAGCCTCATTCTCTGCTATTTCTGCTATTTCCTCA 102985 29 100.0 37 TATTTCCTCA ............................. TTCTTCTCATTGTCGAGGTAGATGATGACTCCGTAGA 103051 29 100.0 ACTCCGTAGA ............................. AGGGCGGGAA ========== ====== ====== ====== ========== ============================= 39 29 37 TTTCAATTCTCCCAGAGTCTTATTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.07%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.80,-0.60] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [53.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [181,602] Score: 0.18/0.18 # # Final direction: R [0.27,4.68 Confidence: HIGH] >NC_018015 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1709598 28 100.0 49 AGTGACGTAG ............................ TCGAAGAAATCAGGAATACAATAGACGATTTCGACGAGCTCCCCGACAT 1709675 28 100.0 39 TCCCCGACAT ............................ ACCATAACTTAAAATGAAGCGTTCGGTAACGCTCAAACT 1709742 28 100.0 38 CGCTCAAACT ............................ CGGGGAGTGCGATAAGCTTCCTCAGTTTTGCTAAGGAG 1709808 28 100.0 59 TGCTAAGGAG ............................ GCGGATGAAGTTTGGAAGGCTATTAAAGAGGGTAAAATTAAGGGGTTCAGTATTGGTGG 1709895 28 100.0 49 GTATTGGTGG ............................ TCGTGAAAGTTGATGGTAATGTAGGATTCTTCAACGGAGAGCGCCTCGG 1709972 28 100.0 49 AGCGCCTCGG ............................ ATCATTCCAAGCGAAATGTCACCAACCAAGTTAGAGTTGATAACTGCTC 1710049 28 100.0 ATAACTGCTC ............................ GGTTAACTTTT ========== ====== ====== ====== ========== ============================ 7 28 47 GTTTCCAAACATTATGTGGTTCTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.29%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [169,759] Score: 0.18/0.18 # # Final direction: R [0,0.18 Confidence: MEDIUM] >NC_018015 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1722315 29 96.6 40 CGACGACTCC ......................T...... TCTACGATGCAGACAACGATCTTGACGTGACAATGCTTTC 1722384 29 96.6 38 CAATGCTTTC ......................T...... TTCGTCAAGGCATGGGATCTCATTCTTACACAATTCGA 1722451 29 100.0 40 CACAATTCGA ............................. TCCTGGACGTCAAGGAAGAGTACGTACTCCCCGGGTTCGT 1722520 29 100.0 40 CCGGGTTCGT ............................. GGGCAGAATCAGAACGTTTCAGCGCTCGCGAACATGACGA 1722589 29 100.0 38 AACATGACGA ............................. GCACAGAAGCCCTTGAGGCAATCAGCTCGCTGAGAGTG 1722656 29 100.0 36 GCTGAGAGTG ............................. AGAAGTGATTAGAGCGGAGGAAGGCCCAAGGTAACC 1722721 29 100.0 38 CAAGGTAACC ............................. ACATCACAAACCGCTCCTGGCCGACCTGGACGAAGTAA 1722788 29 100.0 37 GACGAAGTAA ............................. CAGAGAAATTCGGGGCTTTCAAGATTCCGGACGACAA 1722854 29 100.0 41 CGGACGACAA ............................. TGCAGTTGCACGTGCCGTTGCTAATCCCCGTCCAGTTCACG 1722924 29 100.0 40 CCAGTTCACG ............................. AAAACGCTGTTTTCGTCCTCCTCTTCGACTTCGAAATCGA 1722993 29 100.0 39 TCGAAATCGA ............................. ATGTTCGAGGAGGTTGAGAAGAATGGAGGCTGAAAAGGT 1723061 29 100.0 37 CTGAAAAGGT ............................. AAGGAGGTGAAGACATGAGCACCCGCCTCTTTGACGT 1723127 29 100.0 38 TCTTTGACGT ............................. AGTATGACCCTCTCGACCTCCATCATGCCCACCACCTT 1723194 29 100.0 38 CCACCACCTT ............................. TTATTGTTGCAGCAAGATCAGTATATATGTCAGGAGCA 1723261 29 100.0 41 GTCAGGAGCA ............................. ATGAGCGTGAACGTGGAACTTTACCCCTCCAGCGCGGCCGT 1723331 29 100.0 38 GCGCGGCCGT ............................. TCATGAGCGACCCTCCTTCTCTACAGGGGGCAGTTCTT 1723398 29 100.0 37 GGCAGTTCTT ............................. ACGACCTCAGGGACGGCCCCACCGAGGTAAACGAGCT 1723464 29 100.0 36 TAAACGAGCT ............................. TCCGCGAGGTCCGGGTCCATGCTGAGAAGGTGATTA 1723529 29 100.0 37 AAGGTGATTA ............................. TTGACTTCTACTCGAACGTTTACAGGCAGAAGGTCAT 1723595 29 100.0 36 AGAAGGTCAT ............................. CCTTCACTTCCGGCGGAACTACGTCCCGAATTCTAT 1723660 29 100.0 36 CGAATTCTAT ............................. TCCGGGACCGGGAACGTCGGCCCGTCCCTGGTCACA 1723725 29 100.0 CCTGGTCACA ............................. GCTCCGGGAA ========== ====== ====== ====== ========== ============================= 22 29 38 CTTTCCACACAATTCTGTCCTACGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.17%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [35.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [151,600] Score: 0.18/0.18 # # Final direction: R [0,0.45 Confidence: MEDIUM] >NC_018015 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1745614 29 100.0 37 TTCCCGACGA ............................. TGCTTTGGATTGCCCATATCTCGCTTTTCTGGATTGG 1745680 29 100.0 40 TCTGGATTGG ............................. CTCCGAGGTTCGAGAGCGAGGAGATACCGCTGACTTCCAT 1745749 29 100.0 35 TGACTTCCAT ............................. TCTGTCCTCAGGGTGGCCGTTGAGGTTCTGAAGGG 1745813 29 100.0 39 TTCTGAAGGG ............................. GGTGAATTACAATGAAGTGTCCTGTCTGCGGTGGGGAGT 1745881 29 100.0 38 GGTGGGGAGT ............................. CTCCTTCTTAGCCGCGTTCAACTGGTTCTGGATTTCCT 1745948 29 100.0 36 TGGATTTCCT ............................. TGAAAACGTCGTCGATTGAAGACTGGTCGCAGAGAT 1746013 29 100.0 36 TCGCAGAGAT ............................. TTGATGTCGCAGGGCTTCTTGGTGGTGACAATGCAA 1746078 29 100.0 39 GACAATGCAA ............................. TGGTAAGTGTTCGACTTGCTTTAAGAGATGGGTTGCTTA 1746146 29 100.0 37 GGGTTGCTTA ............................. CATAGACCGCTCCCGCTACCGAACTCCCTAATAATAT 1746212 29 100.0 37 CTAATAATAT ............................. GTTCCAAAGTTCATGATCTGGGATGGAGACTATATTA 1746278 29 100.0 34 GACTATATTA ............................. GGGAGTTTTTGGCTACGTATTGGGTTCCTCTTTC 1746341 29 100.0 TTCCTCTTTC ............................. GCTCCGGGAA ========== ====== ====== ====== ========== ============================= 12 29 37 CTTTCCACACAACACTGTTCTACGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.17%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [46.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [40,503] Score: 0.18/0.18 # # Final direction: R [0,0.45 Confidence: MEDIUM] >NC_018015 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1739901 29 100.0 38 GGGGTGTAGC ............................. AGCTTGGTGGTGGGCGCGGGAGCACTCAAGGAGGTGGG 1739968 29 100.0 36 AGGAGGTGGG ............................. CGAGTTCCAAGGCCTTGAAATTGGCTTCAACGAGTT 1740033 29 100.0 38 TCAACGAGTT ............................. TTGCAGAGAACGAAGATGTGTTTCCGGGGGTGATAAAG 1740100 29 100.0 37 GGTGATAAAG ............................. TCAGCCTCAGGATCAGCAGATTGACAAAGAAACACAG 1740166 29 100.0 41 AGAAACACAG ............................. AAGAGATGAAGCGCCTCATTCCATCATCACCTCACGCCCTG 1740236 29 100.0 39 TCACGCCCTG ............................. GAATGAGTCTGGAGGACTTTCTTATGCCTACTGAAGAAG 1740304 29 100.0 38 ACTGAAGAAG ............................. TGTTGGGGTTGAGACTGGAGTAGAAGCTCTCGCAGAAT 1740371 29 100.0 36 CTCGCAGAAT ............................. GTATTTAAATCAATTACGGAAACTAAGCCCTAATTC 1740436 29 100.0 36 GCCCTAATTC ............................. CTCATAGCGAAGGAGCTGGGAGTTCTGAAGAGGGAT 1740501 29 100.0 38 GAAGAGGGAT ............................. AAGGAGTATGAGGAACTTCAACGGCAGGTAAAAAGTCT 1740568 29 100.0 38 TAAAAAGTCT ............................. AGGATACCAGTCCAGTGGCAGGTAGTTGAAGCGAAGTT 1740635 29 100.0 36 AAGCGAAGTT ............................. CGGTTTCACAGGTGGCCAAGAATACCCCTCCTTTTT 1740700 29 100.0 38 CCTCCTTTTT ............................. GGGCATCATCACCACGATAGCGGCCTTCGGCCTTGCGA 1740767 29 100.0 36 GGCCTTGCGA ............................. GTAACAGTCTTAACAGGCGTGCTTTTTCCGTCTATG 1740832 29 100.0 39 TCCGTCTATG ............................. CGGACAACGACGGGAGAACGCCGACGAATGAGGAACTTA 1740900 29 100.0 GAGGAACTTA ............................. CCTCGGGCAA ========== ====== ====== ====== ========== ============================= 16 29 37 CTTTCCACACAATTCTGTCCTACGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.17%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [39,503] Score: 0.18/0.18 # # Final direction: R [0,0.45 Confidence: MEDIUM] >NC_018015 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1868115 28 100.0 57 AAAGTTAACC ............................ GAGCTAATGAAGCTTCTGAAGGAGTTTAACATCACGAACCCCCGCACCCAGCTCCCA 1868200 28 100.0 53 CCAGCTCCCA ............................ TAACCCAGCTTGACGAACTCCTCTGGAGGGAGTGTTTTGTTGTCAATCCACGA 1868281 28 100.0 47 CAATCCACGA ............................ GTCCCCCCTTCCAGCGATGCCGTCACAATCTCGGGGTTAAGGTTCAC 1868356 28 100.0 36 TAAGGTTCAC ............................ AGCGCCTTGAGGAGCTTAAGCTCCTCGTCGACTATG 1868420 28 100.0 53 GTCGACTATG ............................ TCGTCCATGGAGCCACTGACGTCGACGAATACTATGAGGAGTGGCGCCTTCTT 1868501 28 100.0 GCGCCTTCTT ............................ TGGGCCAGGTACTGTAACCACAGGTTTTTGTCGAACCTGATGTTGA ========== ====== ====== ====== ========== ============================ 6 28 49 GTTTCAGAACCACATGATGTTTGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.71%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [796,48] Score: 0.18/0.18 # # Final direction: F [0.45,0 Confidence: MEDIUM] >NC_018015 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1877271 28 100.0 47 AAAGTTAACC ............................ CGACATTTTTCTGCCTCCCAGATCTTATCCACAATACTACACGCAAC 1877346 28 100.0 47 TACACGCAAC ............................ AAAAGGGGGCCCACTACAAAATTCCTCATGGTTCACCCCTCCACAAA 1877421 28 100.0 43 CCTCCACAAA ............................ GAACGGCTCATTCTCGAAATACACACCCGTGACGGAATTATAA 1877492 28 100.0 54 GGAATTATAA ............................ TGGGGAGCACCCCGTCAACGTTACCGTCGTTGAAGTCTATCGTGACCCTACCGT 1877574 28 100.0 52 ACCCTACCGT ............................ GACACCCTCAATCTCAAACTCAACGAGGGTGTAGTCCTTTCCTTCTTCTTCT 1877654 28 100.0 49 TTCTTCTTCT ............................ CCACGCTGACGATATAGGACACAACCTTACCGAGTGGGCTATCCGACTT 1877731 28 100.0 51 TATCCGACTT ............................ CATCCTTGAATAGTGCAGCGAAAGTTATTTCGACACGGTCCCAGAGCACAA 1877810 28 100.0 CAGAGCACAA ............................ CGCATTCTGA ========== ====== ====== ====== ========== ============================ 8 28 49 GTTTCAGAACCACATAATGTTTGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.29%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [739,54] Score: 0.18/0.18 # # Final direction: F [0.45,0 Confidence: MEDIUM] >NC_018015 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1877974 30 100.0 34 TGTTTCTCAG .............................. TCATGATTGGAGCCAGATTACCAACCCGCCCTCC 1878038 30 100.0 38 CCCGCCCTCC .............................. ACCCTACCGCGGCGGTAATAGATTACCTCCCCCTGAAT 1878106 30 96.7 44 CCCCCTGAAT .G............................ GCTATGGCCAATATGAACGGTACAACGTACGCCAGGAACATGTT 1878180 30 100.0 GGAACATGTT .............................. CTTTGATGTGC ========== ====== ====== ====== ========== ============================== 4 30 38 GAGTTTCAGAACCACATAATGTTTGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [45.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [58,49] Score: 0/0.18 # # Final direction: F [0.41,0.27 Confidence: LOW] >NC_018015 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1949366 30 100.0 38 TTCCCGCCCT .............................. GCGGGCACTTCATCACCCGACCGCACCCAATCACCCAT 1949434 30 100.0 37 AATCACCCAT .............................. CACAGGGTATAAAGTCCGTGCTGATGGCGTGAACGTG 1949501 30 100.0 38 CGTGAACGTG .............................. GGGGCGGGTGCTTGTATTCTCTATCATCATACGTAGGT 1949569 30 100.0 37 ATACGTAGGT .............................. GAAATACTGAAAAGCTTTAACTGCCCTGCTTTTCTGC 1949636 30 100.0 41 GCTTTTCTGC .............................. GGGTAAGAGGGCTGAGGACAGATATAAGCGGCTGGTCTGAG 1949707 30 100.0 36 CTGGTCTGAG .............................. CAATAAGGAGAAAGCTAGAGCGTAAGATAGAGGAGA 1949773 30 100.0 38 ATAGAGGAGA .............................. AAGTGGGCGTGGGGTGGAACGTAGGGCGTCCGTGGGCG 1949841 30 100.0 35 TCCGTGGGCG .............................. TAGAGTTAGAGAACGGGTCGGCGGAAATCTACGTT 1949906 30 100.0 38 AATCTACGTT .............................. TTCAAGGCGTGTGTTGGCGTGGAGCCGGTCTTCGGCGA 1949974 30 100.0 37 TCTTCGGCGA .............................. CATGCATCAGCAGCCACACCTATCAGATATTTCAGCT 1950041 30 100.0 36 TATTTCAGCT .............................. TGCCCAAAGTGGCTAGATTAGCCGAGGCGGCTAATT 1950107 30 100.0 36 GCGGCTAATT .............................. ACAAAGGCAACAGGGATATATGGAACATGCACCCCC 1950173 30 100.0 ATGCACCCCC .............................. TAGGGTGGG ========== ====== ====== ====== ========== ============================== 13 30 37 GTTGCAATAAGACTCTGGGAGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.60,-1.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [476,113] Score: 0.18/0.18 # # Final direction: F [4.68,0.37 Confidence: HIGH] >NC_018015 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 347447 30 100.0 34 NNNNNNNNNN .............................. GTTACCAACGCCGCCGGCGAGGTCGTCGCCGTGG 347511 30 100.0 39 NNNNNNNNNN .............................. AGGAGGAGGCCTGGCGGAGGGTCGAGAGAATCCACATGG 347580 30 100.0 39 NNNNNNNNNN .............................. ACACACGAAGTTATTGCAATTTTGGCGTTATTGGTGGGG 347649 30 100.0 38 NNNNNNNNNN .............................. TTGGCTGAGCGTCGGTAACTTGTTGCGCTTGCAATAGT 347717 30 100.0 37 NNNNNNNNNN .............................. ATACTTGCCACCGCTGTAATACAGAACCTCGCCCGTG 347784 30 100.0 36 NNNNNNNNNN .............................. CACGAGGCGACAACTACTCGAATATAAAAGACAACT 347850 30 100.0 36 NNNNNNNNNN .............................. GGGGTCGAGTGATGAGCACGACGGCCAGAATGCTTG 347916 30 100.0 38 NNNNNNNNNN .............................. GTATAAGTAGCCGTCTCAATCCCTCGACTGCCCACCTG 347984 30 100.0 37 NNNNNNNNNN .............................. GTAGTAGCGTTATAGTCTATGCTGAGGCTGCTAACAG 348051 30 100.0 37 NNNNNNNNNN .............................. CTCTTCTTTATCGTGCCTATAATCGCTGGTAGCGTGT 348118 30 100.0 38 NNNNNNNNNN .............................. CTGTGCTTCTTGTAGATGGCCTCAAGGACTTCGTTGAA 348186 30 100.0 37 NNNNNNNNNN .............................. TCATTTCTGAGGGCGACATAAAGGCCTATAACTACAC 348253 30 100.0 37 NNNNNNNNNN .............................. GGCCGTCCCGGTGAGCGTTGCCGCTGAGACGGATAAA 348320 30 100.0 38 NNNNNNNNNN .............................. GCACTTCCGCGTCAATCCACCTCGGGTCGCCTGTCGTG 348388 30 100.0 37 NNNNNNNNNN .............................. AAGCTTAAACGGGGGTATCTCGTAAAAATCGCCGCCT 348455 30 100.0 39 NNNNNNNNNN .............................. ATCGACGAAAATTTAATAATCGGGCTGGTGGGTGGTTGA 348524 30 100.0 36 NNNNNNNNNN .............................. AGTAACCTTATCAGGTCCTTAGCCCTTCCCTCCGCT 348590 30 100.0 38 NNNNNNNNNN .............................. CAAGCTTTACATATGCCTCATTCCCCCGCCAGTATAAA 348658 30 100.0 37 NNNNNNNNNN .............................. TGTTGTACGTGAACATACCCTCTTCCATGGCATCAAG 348725 30 100.0 37 NNNNNNNNNN .............................. GTGAGCATTTTCATATTTTTGCCCTTTGTTATACAAA 348792 30 100.0 36 NNNNNNNNNN .............................. GCACGCTCAGCGGCGGCTACATTGCAATCGACAGCA 348858 30 100.0 36 NNNNNNNNNN .............................. ATGCCAACGTCAGCATGGAGGACGTTCTCAAGGCGA 348924 30 100.0 36 NNNNNNNNNN .............................. AGGAAGAGTTACATCATACTGGTGGACCCGGAGGTC 348990 30 100.0 38 NNNNNNNNNN .............................. GCGATCGGGTTTTCAGTCTTAATCCACACCACTAGGGC 349058 30 100.0 38 NNNNNNNNNN .............................. CTGAGTAATTTTAGGCTCGTTGAGGACCTCGGCGTCGT 349126 30 100.0 37 NNNNNNNNNN .............................. TCGTCGAGCGTTACGGGGTCCCGCTTCATGCTCGCGG 349193 30 100.0 37 NNNNNNNNNN .............................. AGACTGCATCAAGGAAGGCTGCGACAGTGACGTTTTT 349260 30 100.0 37 NNNNNNNNNN .............................. GTCATTGCGAGCATTGCGATGCTACCGATGACGAGGA 349327 30 100.0 37 NNNNNNNNNN .............................. GGTAGATAATCCAGAAAGCCCTGGCCGTCTCTGCAAG 349394 30 100.0 38 NNNNNNNNNN .............................. TTGCCTCGGTCGTCTGCTGTACGGTGATGTTATGTTGC 349462 30 100.0 37 NNNNNNNNNN .............................. AACAGAACCATCTCAGAGTTTGTCATGCCTATCACCT 349529 30 100.0 38 NNNNNNNNNN .............................. AGGGCAACGCTTATAATCAGTTTCAGCGCGTAGTTCGT 349597 30 100.0 36 NNNNNNNNNN .............................. CTTGCTTATAAGGGGCAGAATTCTACCCCTTTTCGG 349663 30 100.0 38 NNNNNNNNNN .............................. AGAGCGGTGCTTATCTTCTCTGGAAGCCTTGACTCTTC 349731 30 100.0 40 NNNNNNNNNN .............................. GTACCTGAGGCCGAACCGCCTCCAGCCCCCAAACCTTGAC 349801 30 100.0 37 NNNNNNNNNN .............................. GAAGTATCTCATCGAGAACAAAGACGCGTTGCGTGTT 349868 30 100.0 37 NNNNNNNNNN .............................. CAGTCGGGTCGCTCTTGCTCTCGTAGGCGCTGCCAAT 349935 30 100.0 35 NNNNNNNNNN ..................A........... GGTATAAGGCGCTGGACCAAATATCCTCTGACAAA 350000 30 100.0 37 NNNNNNNNNN ..................A........... GCGGTGGGGCAGCGAGGCTATGACTTCCCTGTTCTGG 350067 30 100.0 1 NNNNNNNNNN ...............CTA.GAG.ACTTGGA NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 40 30 37 GTTGCAATAAGACTCTAGGAGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.60,-1.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [55.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [516,135] Score: 0.18/0.18 # # Final direction: F [5.36,0.37 Confidence: HIGH] >NC_018015 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 48 29 100.0 38 GTTGCCCCAT ............................. CATTAGTATCACGGGCAGGCTTATCGCCCCTGCTACTA 115 29 100.0 40 CCTGCTACTA ............................. CTAGAGTATCACTTGCTCCACGCCATTGGCTTTAGCCTCA 184 29 100.0 38 TTTAGCCTCA ............................. CTAAGCATTTTTTGCGTTCGTGTCGTATGTAGTCTTAA 251 29 100.0 38 GTAGTCTTAA ............................. CCTGGCAACAGCATAAAGTACTGCCCACCTGTTACCAA 318 29 100.0 39 CTGTTACCAA ............................. CGGCTGCCCCCTGGGTACTCTATTACCGCTGCCGTCCTA 386 29 100.0 37 TGCCGTCCTA ............................. CAGTTTAAGAAGGCCGTTTACGACGGAGAGGGCTTTT 452 29 100.0 37 GAGGGCTTTT ............................. CGTTGGCGGCATGAGCGTGGGCGAGGGCATCGTGAAC 518 29 100.0 39 CATCGTGAAC ............................. CATAATCCTTTTGTTTGTATAGTTCACTACTCTTAATGT 586 29 100.0 38 CTCTTAATGT ............................. GCTTTCTCTTGCAAAGTCGAGCAAGTCTTTGAGATACT 653 29 93.1 TTGAGATACT .......................GA.... GCCTTCCCCTG ========== ====== ====== ====== ========== ============================= 10 29 38 GTTGCAATAAGACTCTGGGAGAATTGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.07%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.60,-0.80] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [11.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [49,140] Score: 0.18/0.18 # # Final direction: F [4.91,0.45 Confidence: HIGH] >NC_018016 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================================== ====== 2221618 47 87.2 30 GGGGTAGGGT .....A...A.G.C....A..A......................... ATGAACCGCTTAACGGCTAAACAATATCTA 2221695 47 100.0 30 ACAATATCTA ............................................... CGAAGGGATCACAGGATTAAACTTAGGTTA 2221772 47 100.0 30 ACTTAGGTTA ............................................... TTTATGTAAATTAAAATAGATTAAAAATGG 2221849 47 100.0 30 TTAAAAATGG ............................................... TTATAGAATTTGAAGCTGACGAGGAATTTC 2221926 47 100.0 29 GAGGAATTTC ............................................... AAATTTCAGAAGCTAAGTTAACGCACATA 2222002 47 100.0 29 AACGCACATA ............................................... CAATTTCTTAATTGGTGATAACCAACACC 2222078 47 100.0 30 AACCAACACC ............................................... AAATGGTCAGAATGTGACGGATGTTTATGT 2222155 47 100.0 29 ATGTTTATGT ............................................... TGGCATTCCCTGCGAGTGGACTTACAACA 2222231 47 100.0 30 ACTTACAACA ............................................... AACACGCAAAAGATTTAGCCACAGCGCAGG 2222308 47 100.0 30 ACAGCGCAGG ............................................... AAACAGATGAAGTGTTTAAATCTGGTCCTA 2222385 47 100.0 30 TCTGGTCCTA ............................................... AAACTTGAAAAGATTCGTTTAGACTATTTA 2222462 47 100.0 30 AGACTATTTA ............................................... AATCTAAAAGAGCAAAGTGATGGAAGACTG 2222539 47 100.0 30 TGGAAGACTG ............................................... TATAGGGGGATATTACTGCAAGAGAGAGTT 2222616 47 100.0 29 AGAGAGAGTT ............................................... ATCTTCTCGATTAATTAATAACCTCATAC 2222692 47 100.0 30 AACCTCATAC ............................................... GAGAAAGCACAAGCTAAATTAAAAGAACAA 2222769 47 100.0 30 AAAAGAACAA ............................................... ACGATATTTAATTATATCGTGGTAGCAAGG 2222846 47 100.0 GGTAGCAAGG ............................................... ATACTTCTTG ========== ====== ====== ====== ========== =============================================== 17 47 29 GTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.09%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [134,110] Score: 0/0.18 # # Final direction: R [0.37,0.68 Confidence: LOW] >NC_018017 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 3369519 25 100.0 40 NNNNNNNNNN ......................... GTTCTTCTCCTGTTATCTTCATATTCTTCACACCAGTTTC 3369584 25 100.0 40 NNNNNNNNNN ......................... CATTGATACTAAGTCCATAAAACATGTTGATTTACGTTTC 3369649 25 100.0 1 NNNNNNNNNN ......................... NNNNNNNNNN ========== ====== ====== ====== ========== ========================= 3 25 40 AATTCCTTATAGGTAAGCTAAGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.20,-0.20] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [723,545] Score: 0/0.18 # # Final direction: NA [0,0 Confidence: NA] >NC_018018 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1678085 37 100.0 38 NNNNNNNNNN A.AAT..G............................. AATAAGAAGTACGACACAGTTGCTACGTTTGACTTTGA 1678160 37 100.0 41 NNNNNNNNNN ..................................... TCAAGATTAATGGATTACAACAAACTATCCCAGTAGCCTTT 1678238 37 100.0 37 NNNNNNNNNN ..................................... GAGCTTAAAGTCATGGGAGCAGTTATGCTCTCGTACT 1678312 37 100.0 36 NNNNNNNNNN ..................................... GGCTGTGCGCCCTTATTCAAACTATATTCTGTTCGA 1678385 37 100.0 36 NNNNNNNNNN ..................................... AACGCCTAATGCGCCACGCTATTTGATTGGCAGTCA 1678458 37 100.0 40 NNNNNNNNNN ..................................... TCAAAGCCACCAACAACAATTCACGGTTTTGGAAATGATA 1678535 37 100.0 37 NNNNNNNNNN ..................................... ATGAGTTACAGGCTGCAGCAGGACGACGCTGTCACGA 1678609 37 100.0 36 NNNNNNNNNN ..................................... AACCTTTGATTCGTTATTTCAATAGCCTTCGGATTA 1678682 37 100.0 37 NNNNNNNNNN ..................................... ATATTGAAATTGTTTGACCACATAGGTGCGAATTGGC 1678756 37 100.0 38 NNNNNNNNNN ..................................... AGTATTTCATAATGGAGGGTCGCAGAAAATAGTTGCGA 1678831 37 100.0 33 NNNNNNNNNN ..................................... GCTAATTTAAGCAACTACCAAGGTAAAAGTGTA 1678901 37 100.0 37 NNNNNNNNNN ............................A........ TCAACTTTGCTAAGTTGATGATTGTTTCGATGTTTAG 1678975 37 100.0 37 NNNNNNNNNN ..................................... AAAAATTGAAGCAGGAGATACAAAAGGAGCACTTCCT 1679049 37 100.0 33 NNNNNNNNNN ..................................... TTTTTCAGGTGCAGCGCACCGAATCCATTTGTA 1679119 37 100.0 35 NNNNNNNNNN ..................................... AGTTCATTCAAAAGCTACCATTATTGCGTTACCTA 1679191 37 100.0 34 NNNNNNNNNN ..................................... ATTCCGTAAATCTTGTTTCAAAAGCCTCAGTTAT 1679262 37 100.0 37 NNNNNNNNNN ..................................... AAGGAAAATAAAACATTTTTAGTTTTATTTTACACTT 1679336 37 100.0 1 NNNNNNNNNN ..................................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 18 37 36 GTCGCAATCCTTGTTTTAATGGAATATGGTTTTTAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.90,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [156,574] Score: 0.18/0.18 # # Final direction: R [0.37,0.59 Confidence: LOW] >NC_018018 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 11266 37 100.0 36 NNNNNNNNNN A.................................... TAAACTTGTTTTATGCAGAGTTGATGAAGGGTTTGA 11339 37 100.0 33 NNNNNNNNNN ..................................... AAAATTAAAATGTATCAAGACGAAATTAGAAGT 11409 37 100.0 37 NNNNNNNNNN ..................................... TCATTTTCAACATATCTGTCAGATACAAAGCCATCAA 11483 37 100.0 35 NNNNNNNNNN ..................................... GAAACGTGCTAATTTAAAAGGTTATACATTAGTAG 11555 37 100.0 36 NNNNNNNNNN ..................................... GTAAATTAAATTCGCTTTACACGCAATTAGGGACAT 11628 37 100.0 39 NNNNNNNNNN ..................................... AAAAAAGATGAATAGATTTAAACAGTGCTTTTTAGCAAA 11704 37 100.0 34 NNNNNNNNNN ..................................... AATGGAATAGTTACAAAGGATACTGTTCAACTCA 11775 37 100.0 33 NNNNNNNNNN ..................................... CATTGTCTCCAAAAATACCAACTGCTGCTGCTG 11845 37 100.0 35 NNNNNNNNNN ..................................... AATTATATCATAAACGTATTTTAGCAGAAAACGCA 11917 37 100.0 36 NNNNNNNNNN ..................................... GCAACCTATAATAAAAACTCAAAAATAAACTAAATC 11990 37 100.0 37 NNNNNNNNNN ..................................... AGGTTTTGAAATACTTGAATGCTTTGGAGGAAATGGA 12064 37 100.0 36 NNNNNNNNNN ..................................... AAAAGGGCAATTTGCGCAAACAAGTGGAGGCAGTGC 12137 37 100.0 37 NNNNNNNNNN ..................................... AAACATATCCAATAGGATGATACATACCTTACGGTAT 12211 37 100.0 35 NNNNNNNNNN ..................................... TCCCGATTTTTATCTTAACATATTAACCTTTTATA 12283 37 100.0 37 NNNNNNNNNN ..................................... AATAAAAATCTTGTATAAAAAAATTTAAGGTAGTAGT 12357 37 100.0 37 NNNNNNNNNN ..................................... ATAAATTATGCTCAGAAATCGACCTCTAAAGTTGCAC 12431 37 100.0 35 NNNNNNNNNN ..................................... ACTCAAAAAGTGTCGGTTAAAATTCAGCATTTTTG 12503 37 100.0 36 NNNNNNNNNN ..................................... ACAAATAAAATATCTTAACTTGTACTCTTTAGATAA 12576 37 100.0 38 NNNNNNNNNN ..................................... TAGAAGCAACCATTTCATTTGCGAAAACAGAGCGTGGA 12651 37 100.0 34 NNNNNNNNNN ..................................... AAGGATAAGTTTGAGAAAAGAATGTCGTATCATA 12722 37 100.0 1 NNNNNNNNNN ..................................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 21 37 35 GTCGCAATCCTTGTTTTAATGGAATATGGTTTTTAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.90,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [123,191] Score: 0/0.18 # # Final direction: R [0.37,0.41 Confidence: LOW] >NC_018018 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 205432 37 100.0 34 CAAGTTCGCT ..................................... TTTAATATTTTTTATAAAAAAACACCTAATAAAT 205503 37 100.0 36 CCTAATAAAT ..................................... TTCTTTCCATAGTTCTAGTATCTCAGAATCTATTTC 205576 37 100.0 33 AATCTATTTC ..................................... TTGACATAAATTATTGTTATTTAAATTAAATAT 205646 37 100.0 33 AATTAAATAT ..................................... GTCTTTGATACCTTTTACTTTTAGCATATACTT 205716 37 100.0 38 GCATATACTT ..................................... TTCATAATATTTGTTTTTTAAAAGGTTATTATTAAAAG 205791 37 100.0 38 TTATTAAAAG ..................................... TTTACAGGAGAAAGTATTGTTCCTGAATACACAATAAC 205866 37 100.0 34 ACACAATAAC ..................................... CTCGTTCTGCGCAATTGCGCATGCGCAGTTGTTA 205937 37 100.0 35 GCAGTTGTTA ..................................... GTACTTTAAAACATATAAATAGTATCCTCAAATCT 206009 37 97.3 38 CCTCAAATCT ............................A........ CTTTACATCAAAGGCATTGTCATCCAATAAATATTTTT 206084 37 100.0 38 AAATATTTTT ..................................... TGGTCTACTAGAATTAGAAGATGATATTTATAATGCAA 206159 37 100.0 34 TATAATGCAA ..................................... CTTCTTTTAATTTTTTCAATATGAGTTGCTTTTT 206230 37 100.0 38 GTTGCTTTTT ..................................... TTATGGATACGGTCTTTGTAGTACGAACCTGTCACTTC 206305 37 100.0 36 CTGTCACTTC ..................................... TGAATTCGGAACTGGTCTAGGGAAAACTATCTATCT 206378 37 100.0 CTATCTATCT ..................................... TCAAAATAGT ========== ====== ====== ====== ========== ===================================== 14 37 35 ATTGAAAAGCATATTCCATTATAACAAGGATTGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1465,251] Score: 0.18/0.18 # # Final direction: F [5.09,0.37 Confidence: HIGH] >NC_018024 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1096374 30 100.0 38 AGGAGTTCAA .............................. CATGACGATAGGTTTACTGATTTTATTGCGGGCATAAT 1096442 30 100.0 36 CGGGCATAAT .............................. GCTGTTCAAACTGCGCAAGTAACGCCACAGAAGATT 1096508 30 100.0 36 ACAGAAGATT .............................. GGTCTTGGGCAGCGGTCAGGGATAAGAGATATGCGT 1096574 30 100.0 40 AGATATGCGT .............................. CCTTACGCAGGTTTTCTTCCAATTGTTCAACGTTTGTCAC 1096644 30 100.0 36 CGTTTGTCAC .............................. TAATCTTAAATATTCCAGAATTTATGATTATATGTT 1096710 30 100.0 36 ATTATATGTT .............................. TCCCAAAAAAAGGCCTTTTTTGAAGGTCAAATCCCA 1096776 30 100.0 36 TCAAATCCCA .............................. TCCCCGTTCGAGATCCCCCACATATCCCGCATACTT 1096842 30 100.0 39 CCGCATACTT .............................. CTGTTCCGTATATTGATTGATAGCTTCACGCTCACGATT 1096911 30 100.0 36 GCTCACGATT .............................. TGGTTCAGGCCAATACATACAACCCCAACTCAGTCC 1096977 30 100.0 38 AACTCAGTCC .............................. GCGCTTTAGTGATATAATATATTCATGAGTGCTGAAGC 1097045 30 100.0 36 GTGCTGAAGC .............................. CCTTGTGCCTGTCCATTTGGCATGGGTTTGGCATGC 1097111 30 100.0 38 TTTGGCATGC .............................. GATTTATTCCAGCTAAGAGACGTGCAGAGATGTTAGCT 1097179 30 100.0 39 GATGTTAGCT .............................. AGAAGAATTTGACGGAAAAGAAAGAAATATTTGAGAAGT 1097248 30 100.0 36 TTTGAGAAGT .............................. ACCGCTTGACCTGAGGGTATACAACTTGGCTGCACT 1097314 30 100.0 35 TGGCTGCACT .............................. GATAAAGTAATTGTAATTGGAATACCTAATAAATT 1097379 30 100.0 37 CTAATAAATT .............................. TTTTCCCCAAGGCCTCTGTTCATGATGTCATCGACAG 1097446 30 100.0 37 TCATCGACAG .............................. CGAATATATCACCACCTATTGAATTGATTCTTACTGT 1097513 30 100.0 37 TTCTTACTGT .............................. CATTTCCCGTGTTCTTCTTATGCAATTTGTTCATGGA 1097580 30 100.0 38 TGTTCATGGA .............................. AAGTATCCCGTGCTCGGGATGCTCCACCCTGGCAGGGC 1097648 30 100.0 36 CTGGCAGGGC .............................. TGCCATGGATAAACTTCGACGGGTTGATAGCTCACT 1097714 30 100.0 36 ATAGCTCACT .............................. CGGCCCCCATGAGATCTCGGCTATTTCCTCTGGCGT 1097780 30 100.0 37 CCTCTGGCGT .............................. ATTCTACTTTATTATTTTGGAAAAGCACACTATTTAT 1097847 30 100.0 35 CACTATTTAT .............................. AAGGTTGATTTTACTGTGGATGTATTGTTTACCCA 1097912 30 100.0 35 TGTTTACCCA .............................. CTTCGCCTAATGGGTTTCATGGACTACCTGACCAT 1097977 30 100.0 37 ACCTGACCAT .............................. GAGCAAGGCCGAGGATGTATACGAGAGGGACATAATC 1098044 30 100.0 36 GGACATAATC .............................. TGGGATTATACGTATTGGCCTGCACCCAATTGATGT 1098110 30 100.0 CAATTGATGT .............................. TCGTTTGATA ========== ====== ====== ====== ========== ============================== 27 30 36 GTTTCCATCCCTTATAGGAAGACTAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.80,-2.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [393,380] Score: 0/0.18 # # Final direction: R [0,0.37 Confidence: MEDIUM] >NC_018024 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1107553 30 90.0 38 CACCTTTGGC --..T......................... CATGTCCCTGCATATTTCTGCGGTTTCCACGAAAGAAA 1107621 30 100.0 37 ACGAAAGAAA .............................. TCATCGATCATGCTGCTAAGCCAGGGCAGAAGATTAT 1107688 30 100.0 36 AGAAGATTAT .............................. CCAAAACCGATTAAACCGCTCCAGCTGGATTTCGGT 1107754 30 100.0 36 GGATTTCGGT .............................. TGTCAGCGTGGCAGAAAACTGCCAAAAGGTGGGACT 1107820 30 100.0 36 AGGTGGGACT .............................. CATATTGAAGGGGCTTAACGAGCTTCTGGAAGACGT 1107886 30 100.0 36 TGGAAGACGT .............................. GGATTCCATACTCTGCTTGAGGCTCAATTCATGACC 1107952 30 100.0 37 ATTCATGACC .............................. CAAACCCAGCTAGGGAGCCAGTGTCACGCTATCCCAA 1108019 30 100.0 37 GCTATCCCAA .............................. TCAATACCAATGCCAGCACTTGGCCAACTTGTTTCAG 1108086 30 100.0 36 CTTGTTTCAG .............................. TAAGCGCCCCAAGCAGGGAATACCCATCACATGAAG 1108152 30 100.0 36 TCACATGAAG .............................. TCTCTGTTTCTTTAGCCATTTGCTCTATGAATTCGT 1108218 30 100.0 37 ATGAATTCGT .............................. AAAGCTGGCTTAGTATCACATAACAATATCAAAGAAT 1108285 30 100.0 36 ATCAAAGAAT .............................. ATTTGGGTATGTATTTGTTCTCCCGCCTGTCGTGCT 1108351 30 100.0 37 CTGTCGTGCT .............................. TTTTTCCATGCCTACAAGCCCGAGCTTCTTGTATCCC 1108418 30 100.0 35 CTTGTATCCC .............................. TTAAACAGGTGATGTAGCGAAGCCAGTGTTGCCAC 1108483 30 100.0 36 GTGTTGCCAC .............................. TGATTATTGGGTTAGGTGATGCGTATGTCGTTTCCA 1108549 30 100.0 36 GTCGTTTCCA .............................. TGATTATTGGGTTAGGTGATGCGTATGTCGTTTCCA 1108615 30 100.0 36 GTCGTTTCCA .............................. GCGATATTGGTGATCCAGTGATTTCTAATGAGATCA 1108681 30 100.0 36 AATGAGATCA .............................. CAGATGCAGAGGTAACCACGGCGGACGGCATTCCAC 1108747 30 100.0 38 GGCATTCCAC .............................. AAGAGCTCGAAGGAACAGGTCCAGCTGCCTTGCCCCAC 1108815 30 100.0 36 CTTGCCCCAC .............................. AGCTTTGCTGTTTTCTGATAAAATTTCCGGGATATG 1108881 30 100.0 36 CCGGGATATG .............................. ATCATAGAATTCACCCAGCCTTTCTATCCATTCTTT 1108947 30 100.0 36 TCCATTCTTT .............................. CTCTTGCCGAAAGCTGCACAGCATTTGCCTTGCCGT 1109013 30 100.0 36 GCCTTGCCGT .............................. GCTGTGCGATAGGCAATCAAATGATACAGGGCATCT 1109079 30 100.0 37 CAGGGCATCT .............................. CCTTTAAGCTTAGACCAGCCTGGTCGCACAGACGCTG 1109146 30 100.0 36 ACAGACGCTG .............................. CTTCCAAAGGATATGTGGATGGACGAATTTATAGTC 1109212 30 100.0 35 ATTTATAGTC .............................. TTTTAGTGGCCACGCTGTTTTTTACCATCCATACA 1109277 30 100.0 36 CATCCATACA .............................. TGACAGACAGCCTGCCCAAAAACAGGAGGCTGCTGC 1109343 30 100.0 37 AGGCTGCTGC .............................. TTGTTTGTGGGGCAGAGACCGAAAGCGGAATACCACT 1109410 30 100.0 35 GAATACCACT .............................. CAACGACATAGCCATCCTCGTCGAAGCCCAAAGTG 1109475 30 100.0 35 GCCCAAAGTG .............................. CCGACGACCTTGGCGACGGATTGCGCCAATTCGGA 1109540 30 100.0 38 CCAATTCGGA .............................. CTTCAGCGTAGATTTCAGGGTATCTCGTATCTATCAAG 1109608 30 100.0 37 ATCTATCAAG .............................. GCATACATCCAAGCACGGCAAAGATCCTCATATTCTC 1109675 30 100.0 36 TCATATTCTC .............................. TTTAAGGGACATTTAGGAGAGATGGCATGAATGCTA 1109741 30 100.0 36 ATGAATGCTA .............................. ATTTTCGTTTTTATGGCGTCTGCTACTAACTCATAC 1109807 30 100.0 36 TAACTCATAC .............................. TGAAGTGTGGTTATGCCAAATAAAGACAGCGCTTAA 1109873 30 100.0 36 CAGCGCTTAA .............................. TGCAGCCATGAGCGGCCCGCACCCTCTGACGTCCTT 1109939 30 100.0 38 TGACGTCCTT .............................. GGGTCTTGTGCCACCACCAGGTTGTCCATCGCCCACGT 1110007 30 100.0 36 TCGCCCACGT .............................. CATGTTAGAGGAATCCTTTTATGACATCGGTGTTTT 1110073 30 100.0 35 TCGGTGTTTT .............................. TCGCCGTTATGTGCCCCTGCTGTGCCCATAAGTCG 1110138 30 100.0 38 CCATAAGTCG .............................. CTTTTCGACCCACTTCCCAGTTATCATCCAGTTGCCGA 1110206 30 100.0 35 CAGTTGCCGA .............................. CTTCCCTCGTGGTCGTCCTGGTACGGTGAATTTTA 1110271 30 100.0 39 GTGAATTTTA .............................. TGGAATTCAAAGAAATGAGTCTCGAAGAACTGGAAGCAT 1110340 30 100.0 36 CTGGAAGCAT .............................. AATCTTGCCAAAGCTAAAATGTATAAAGTTGCGTAA 1110406 30 100.0 36 AGTTGCGTAA .............................. CTAACATGCTCCTCTCCTCATTAATTAAGGAGGCGA 1110472 30 100.0 37 AAGGAGGCGA .............................. CAGAACCCAGATTACCCAACAAAAGCCGGGCGGAACC 1110539 30 100.0 36 GGGCGGAACC .............................. TGGGGAACGCTTCCCGCATCGTGGCGGATATTGGCA 1110605 30 100.0 37 GATATTGGCA .............................. GCATATTTTGTGATCTCATTGGAGATCACCGGATCGC 1110672 30 100.0 36 ACCGGATCGC .............................. TAGTAGCAATGGCAGGCGATACAGTGAAAATGCCTG 1110738 30 100.0 36 AAAATGCCTG .............................. GCAAGCTGGGCGGCGTTGGTGTCGTGACTGGTCACG 1110804 30 100.0 36 ACTGGTCACG .............................. TAGCTATACCCAAGGGGACCAGGGTCAGGGCAGAAT 1110870 30 100.0 36 AGGGCAGAAT .............................. TAAGTAATTGGTATACCATTTATCCCCGCACATCTC 1110936 30 100.0 36 CGCACATCTC .............................. TGGGTAACGGTATATCCACGTCGGCGGAGTTCTGCA 1111002 30 100.0 36 GAGTTCTGCA .............................. CTGCTTACCAACCCGCCGGGAGATTTCCTCCCAGGT 1111068 30 100.0 36 CCTCCCAGGT .............................. CAGCCATATTTCCCCACCTCCTTTCTATAAATACGT 1111134 30 100.0 37 ATAAATACGT .............................. GTACAGCGATCTTAAAGAAATCAGACTTGAAATCATC 1111201 30 100.0 37 TGAAATCATC .............................. TGATATGGGAGTTTTCTTGGCAACGGTTGCATGCGCT 1111268 30 100.0 36 TGCATGCGCT .............................. TTGGTTCGCTAAACCAACCATCAACCCCCGGTCATA 1111334 30 100.0 38 CCCGGTCATA .............................. TAGTCCATGAACGTGACGGCAATGGAGGTGGGACGGTT 1111402 30 100.0 36 TGGGACGGTT .............................. TTCTTCCGTTCCGATGACGGTCTTGATGAATGTTTT 1111468 30 100.0 37 TGAATGTTTT .............................. TTATAAACACGAAGGTCAAGCGGTTCATTTCTCTTGT 1111535 30 100.0 36 TTTCTCTTGT .............................. CTTCGATTGACGATATCGAGCCAGAACTTCCAGGCT 1111601 30 100.0 36 CTTCCAGGCT .............................. ATCTTTCGTATTACTCTGGAGGCTGCGGAATCATGA 1111667 30 100.0 36 GGAATCATGA .............................. GGAACGGGAGCGTATGAAGGCCATAGACGAGATTGC 1111733 30 100.0 38 ACGAGATTGC .............................. AGGCCAACTATATAGCGACGAAACTCGTTGTTTACCCA 1111801 30 100.0 37 TGTTTACCCA .............................. TCCTTTGTTTCTTCGTCCTTCCACCTGATCCGCATTC 1111868 30 100.0 36 ATCCGCATTC .............................. GCCAAAATATCGTTTACGTCTTTGCCTGTGCTTCAT 1111934 30 100.0 36 TGTGCTTCAT .............................. AGGTAAAAACGACAAAGAGATTGGCGAGATATTGGG 1112000 30 100.0 36 AGATATTGGG .............................. GGAGCGAAGTTGCCGACTGCATCCTTGCCGATGACG 1112066 30 100.0 37 GCCGATGACG .............................. GATTGACAGATCTCGTTGTAAAGCGACGCGACGGCGT 1112133 30 100.0 37 GCGACGGCGT .............................. TGGCGCTGGCTTATTTTGACGGGTTTACATTCAACTA 1112200 30 100.0 36 CATTCAACTA .............................. GTGGGCTGTTATCTTCAATTCCCAGATCGTCGAGGA 1112266 30 100.0 37 TCGTCGAGGA .............................. TTGTACTTATAGGCAATTTTTTTAGACTTTTTACATA 1112333 30 100.0 38 TTTTTACATA .............................. GTAGACACCACGGCCGGTGATGTTACGGCTGTTGCGTA 1112401 30 100.0 36 CTGTTGCGTA .............................. TGGTCCGTTTGGGATGTGAGGAGGCTCGGGGATTGT 1112467 30 100.0 36 CGGGGATTGT .............................. CGCGAGTGTCTCGCGAGTGTTCCTCGAGTATGTTTT 1112533 30 100.0 38 AGTATGTTTT .............................. TTGTTTGCTCGTGGGGCTTCTTAGGATATACGGGAATA 1112601 30 100.0 38 TACGGGAATA .............................. CAGGATGACCGTCTTGAGTATGAAGTTGCCGGATGGGG 1112669 30 100.0 36 CCGGATGGGG .............................. CGGCCAATTCCACACCTATGAAGGCACCAGAATTCC 1112735 30 100.0 34 CCAGAATTCC .............................. CTGGAGCGCGAGAGACAGGCAACCGATGCCTACA 1112799 30 100.0 35 GATGCCTACA .............................. CTAATCGTCTGCCTTCGATGCTAATTGGTATTGAG 1112864 30 100.0 35 TGGTATTGAG .............................. CGTTGCCATCTTTTATTCCTCCCTTTCAATTCTTT 1112929 30 100.0 37 TCAATTCTTT .............................. CTATCGACGAATGGCGAAAAGAAAGATGCCGTGCCGA 1112996 30 100.0 37 GCCGTGCCGA .............................. TAAGACCGACACCTATACCACGCCCTATATTGCCCCT 1113063 30 100.0 39 TATTGCCCCT .............................. CAAAAGTCCATTTAAATACATCATAAAGTCCCCGAACCG 1113132 30 100.0 39 CCCCGAACCG .............................. TGGAAAATTGATAAAGTGAATGAAATACTCAAAATAGAA 1113201 30 100.0 37 CAAAATAGAA .............................. TACAAAGTACAACAGTTTGAAATGATCATGAAACAAA 1113268 30 100.0 ATGAAACAAA .............................. CCTTTGATAT ========== ====== ====== ====== ========== ============================== 87 30 36 GTTTCCATCCCTCATAGGAAGACTAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.80,-2.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [118,159] Score: 0/0.18 # # Final direction: R [0,1.05 Confidence: HIGH] >NC_018024 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1604244 30 100.0 36 TTTCATTTAT .............................. CCAGAGCTAATGCAGACACTGCACTGTCAAACCAGA 1604310 30 100.0 35 TCAAACCAGA .............................. TAGGGCGGCCAAGCCTTAATCGCTCATCGATGACG 1604375 30 100.0 38 ATCGATGACG .............................. GTACGGCCTTGGGGCTGGATCCAAGCCCTCAGCTTGGT 1604443 30 100.0 36 TCAGCTTGGT .............................. GGGTGCTAAGGACGAGGACTTTTATCTAGAAGATCG 1604509 30 100.0 37 TAGAAGATCG .............................. GCACTTGCAGCGCCTCGTATCTCTTTATTATTTTGAT 1604576 30 100.0 37 TTATTTTGAT .............................. GTGCTTTTTATAGACCCGCCATGGAATCTTGGCAACT 1604643 30 100.0 36 CTTGGCAACT .............................. TGCTCGGCAAGGCAGCGAAGCTTGGGACCTATACTT 1604709 30 100.0 36 ACCTATACTT .............................. GCGCGTGGCTTCAAAAACATGATATGCAGACACACC 1604775 30 100.0 37 CAGACACACC .............................. CAAAGATATGCTGCCGCAAAGGATTTGCCTACTCCAG 1604842 30 100.0 36 CCTACTCCAG .............................. ACCACGCCCCCTACTGGTGCCTGCGCATAGGTCGTG 1604908 30 100.0 38 ATAGGTCGTG .............................. GGGGTGGCATAGATGAGCAAAAGAAAAAGCCAGGGTCT 1604976 30 100.0 36 GCCAGGGTCT .............................. CTTGACGCGAACTTAAGGCAGGCAGCCAACGAGAGA 1605042 30 100.0 35 CAACGAGAGA .............................. ACGGAAAACCAGCGCAAGGCCATATTTGCCATATG 1605107 30 100.0 38 TTGCCATATG .............................. GGGGTGGCATAGATGAGCAAAAGAAAAAGTCAGGGTCT 1605175 30 100.0 37 GTCAGGGTCT .............................. AAAACCCCTTCCTTGATGCGCCACACCTCGGGCTGGA 1605242 30 100.0 36 TCGGGCTGGA .............................. ACTGGTCTAACGAAATACTGGCCAGCCCCGGCATCA 1605308 30 100.0 37 CCCGGCATCA .............................. AAGACCCAACACAGAAGAATTTTATTCATGGTTGGCT 1605375 30 100.0 38 ATGGTTGGCT .............................. GGTTCGTAGCGGTCGCTTCCCAAAGGGCATACGGCTGT 1605443 30 100.0 35 ATACGGCTGT .............................. CCGTGCGCCACTGTGCCATCATCTGTCCTGCCTGC 1605508 30 100.0 39 TCCTGCCTGC .............................. GATGGACTAACACCATTACATTTTATCGAAGCGAGCGGT 1605577 30 100.0 36 AGCGAGCGGT .............................. CAAATTACACTATATCTGATAATGGTAAGGAGATTG 1605643 30 100.0 38 AAGGAGATTG .............................. TTGTCAATCACTGAAGGCGATGACGGGCGAGTGTTGCT 1605711 30 100.0 38 GAGTGTTGCT .............................. GAGCTAAGCCACCGAACCACTAGGGCCACCGGAGCTAT 1605779 30 100.0 36 CCGGAGCTAT .............................. TATTTCTTTCTGAAGGTCGTAAATGTCTCTTAGCCT 1605845 30 100.0 35 CTCTTAGCCT .............................. CAGAGAACGCCTTAATACGCTCTATGCGAATATCG 1605910 30 100.0 35 GCGAATATCG .............................. CAAAACGTGCAAAAAGACGAGACCCTGCCAAATAC 1605975 30 100.0 37 TGCCAAATAC .............................. TCGCCCTGTTTTTCAGGGAGTTTCTCTTTGATCGCCC 1606042 30 100.0 35 TTGATCGCCC .............................. CTGACCGCCCGCATAAAGTCCCTGAACGAAGAAAT 1606107 30 100.0 38 ACGAAGAAAT .............................. TTTCTCCCGTCAGATATGCCCCGAGAAGAGACATGACG 1606175 30 100.0 36 AGACATGACG .............................. GTGGCAACTTGGCCTGTGTACGGTCCTGTGTACGGT 1606241 30 100.0 36 TGTGTACGGT .............................. CAGCAGAGATTGAGTTAGCTGTGATTTTATTACCAG 1606307 30 100.0 36 TTATTACCAG .............................. AGGATCCGCCCATCTTCACCTACGCCAGGCAGACCC 1606373 30 100.0 35 AGGCAGACCC .............................. GGTGGTGTAAGTCTCAGTGCTGAATCCGCCTCTGT 1606438 30 100.0 35 CCGCCTCTGT .............................. CACAAGGGAGATTCGGGGAATGCTTACGGATAGTG 1606503 30 100.0 38 ACGGATAGTG .............................. ATACAAGCATTCCATTGGCCAATACCCTGCTGTAGGCC 1606571 30 100.0 36 GCTGTAGGCC .............................. CGTAACATGCCTTTGGGCTAATGGCAGATATACATT 1606637 30 100.0 36 GATATACATT .............................. AGATGATGAATATCCCTTCCTTATTGCCAACATCGA 1606703 30 100.0 36 CCAACATCGA .............................. CTGCTTCGTCGATGGACATGCCAAGCACCTCGTAGT 1606769 30 100.0 38 ACCTCGTAGT .............................. GGGAATCGATTGAGCTCATTGGCAGCGACTTTGACAGG 1606837 30 100.0 36 CTTTGACAGG .............................. CGTCTTCTATCTCCCCACGCTCTTCCCACGTCTCGC 1606903 30 100.0 36 CACGTCTCGC .............................. TTTTATGCGTTCTTCTATTGCATGGAAGTCTGGGTT 1606969 30 100.0 37 AGTCTGGGTT .............................. ATTATTTGGTTGGCGCCGATGTGGTTATCATTCCCGA 1607036 30 100.0 37 TCATTCCCGA .............................. TGGCAAAAACTGGAGGTCCTTTGCGAGTCTTATATAG 1607103 30 100.0 36 TCTTATATAG .............................. CACAGGAGAGAGCACAAGAGCTGCTTGCCAAAGACA 1607169 30 100.0 36 GCCAAAGACA .............................. GGGAATGGACTCGCATTGAGGCTTTTGGGAAAAGGA 1607235 30 100.0 37 GGGAAAAGGA .............................. GCGGTGTCAGCCCCGCCAAATATAAGAGCCTTCCTGT 1607302 30 100.0 36 GCCTTCCTGT .............................. ATGGAACCCCCTGCCGGGGTAATCCATGCCAACATG 1607368 30 100.0 37 TGCCAACATG .............................. GGGGGTATAACGGCCCCCAACAATGTTGACATCACCT 1607435 30 100.0 38 GACATCACCT .............................. AAGCACATCAGCTGCTTTCATAAAATCAGGGAGAGGAT 1607503 30 100.0 39 GGGAGAGGAT .............................. TCGATATTCGTTGAAGGCAATATTTATAAACTTCTTCCG 1607572 30 100.0 34 ACTTCTTCCG .............................. GATCAAAAAAGGTCACAAGCCTAGCCCTATTCCA 1607636 30 100.0 35 CCCTATTCCA .............................. TAGGACGATTTCCGCTTCGTCATCGCTTATATTCT 1607701 30 100.0 39 CTTATATTCT .............................. TAATTTAATCACCGAAGCCGACGCAGTTGGTGCCGTTGT 1607770 30 100.0 36 GTGCCGTTGT .............................. GAACGCCCAACATGGCAAACACTACTGCAGGCAATG 1607836 30 100.0 36 GCAGGCAATG .............................. TGCTCGGCAAGGCAGCGAAGCTTGGGACCTATACTT 1607902 30 100.0 35 ACCTATACTT .............................. TGGTGGCAGGGTCGAATTTCTGCGGGATGAGAACC 1607967 30 100.0 36 GATGAGAACC .............................. CAGTATCAAGCCAGTTGCGTAACTGATCGCTATCGT 1608033 30 100.0 36 TCGCTATCGT .............................. TTGTGCCGATCCTGTATGATTGACCCGACAAAACCG 1608099 30 100.0 38 GACAAAACCG .............................. TGGAGACACCCCATTGATGATTTTGGGCAGCGGGACGC 1608167 30 100.0 37 AGCGGGACGC .............................. ACGTATCGGGAATACAGCGCTCGATATTCGTTGAAGG 1608234 30 100.0 38 TCGTTGAAGG .............................. AGTCATCTTATATGCGGTGATGTCGTCGCCACATACCT 1608302 30 100.0 35 CCACATACCT .............................. TAAGGACCAAAACGCCATTCGGCACTTCTGCGTTG 1608367 30 100.0 36 TTCTGCGTTG .............................. TTTTTTGAAAGATTTTTATTAAGATTGATATAAAAA 1608433 30 100.0 39 GATATAAAAA .............................. ATTTGAATACAATGTAATTTGATCAGCTGTGCCTATCTC 1608502 30 100.0 36 TGCCTATCTC .............................. CAGTATCAAGCCAGTTGCGTAACTGATCGCTATCGT 1608568 30 100.0 35 TCGCTATCGT .............................. CAGGAAGGCTTATTTACCGCATCCAATCTTTCAGT 1608633 30 100.0 36 ATCTTTCAGT .............................. TCGGTTACAATTGCAACACCTGATGACGATTTTTTT 1608699 30 100.0 38 CGATTTTTTT .............................. GCGCGACACGATCAGATGCCCGAACCCCCCATCGCCGG 1608767 30 100.0 36 CCATCGCCGG .............................. CGATGCCGAACTTGGTGCCGCGCAGCTCGCCAACGC 1608833 30 100.0 36 TCGCCAACGC .............................. CTTTATCGAGGAGTGCTGTGAAGTTGGGGAATATTT 1608899 30 100.0 37 GGGAATATTT .............................. CGGGTAAACAAACGGGTGGCTTTCATGTCGATGAAGT 1608966 30 100.0 37 TCGATGAAGT .............................. GTGATGTTCTGTCTTGATAACTGCATTGGAATATAGG 1609033 30 100.0 35 GGAATATAGG .............................. CTGAATGGGGCGAAGTGGCGGCACGCTTGAGGGAA 1609098 30 100.0 36 CTTGAGGGAA .............................. TACTTATAACAACTCTTCAGCTTACAACTACAATAA 1609164 30 100.0 35 ACTACAATAA .............................. GGGTTATGGCTGCCAAGGAAAGAGATCCCGAATAT 1609229 30 100.0 37 TCCCGAATAT .............................. CATTGGGAGGATAAGTGGAGACTTGTGCAAATCCCTT 1609296 30 100.0 CAAATCCCTT .............................. CCGTCGCATA ========== ====== ====== ====== ========== ============================== 77 30 36 GTTTCCATCCCTCATAGGAAGTTCAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.80,-2.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [210,463] Score: 0.18/0.18 # # Final direction: R [0.27,0.55 Confidence: MEDIUM] >NC_018080 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2803781 28 100.0 32 TGGGTTCGAG ............................ GACGGCGATGCGGCAACCCTAGCGGCGTCGAA 2803841 28 100.0 32 CGGCGTCGAA ............................ GGCTTCCGAATCGGAAATCTCGACCAGTACGA 2803901 28 100.0 32 ACCAGTACGA ............................ TCCTTGCCGCTCAGCTCGCCGATCTGCTTGTA 2803961 28 100.0 32 TCTGCTTGTA ............................ ACAAGATATCCCTGCTATGCCTCGCGGGGAAA 2804021 28 100.0 32 CGCGGGGAAA ............................ TGCCAGGAGCCCTCCAGATTAGGGGCGTCCGG 2804081 28 100.0 32 GGGCGTCCGG ............................ GAGTACGAAGACGGCCGGCGAGATGATTCCGG 2804141 28 100.0 32 ATGATTCCGG ............................ CCAGTTGATCCGCCTGCTGGAGATCGTCCCGA 2804201 28 100.0 32 ATCGTCCCGA ............................ GCCCAAGGTCTTGCGGTTCTCCGGCTCGTCGC 2804261 28 100.0 32 GGCTCGTCGC ............................ CGGCTGTTGGGGTTGAACGTCATGCCCGCTTT 2804321 28 100.0 32 TGCCCGCTTT ............................ AATAACCAGCATCGCCCTGCTCCGTAGGAAAA 2804381 28 100.0 32 CGTAGGAAAA ............................ GATGACTTCTGCGGTTGTGAAGTTCTTCGAGT 2804441 28 100.0 32 TTCTTCGAGT ............................ GTGGTGACGGCTCAGGGGAGGGCGGTGGTACT 2804501 28 100.0 32 CGGTGGTACT ............................ CCGGCGTCGTAGAGTGCTTTGGCTTGCTTGAC 2804561 28 100.0 32 CTTGCTTGAC ............................ CGTGCCGGTCAGGCCGGTGTACGACTTCTTCA 2804621 28 100.0 32 GACTTCTTCA ............................ GGCTATGGACCAGGACGCCACCACGTCGGACT 2804681 28 100.0 32 ACGTCGGACT ............................ GTGCATTGATTGTGACGCTGATGTTTTCGATT 2804741 28 100.0 GTTTTCGATT ............................ TAGCTCCGA ========== ====== ====== ====== ========== ============================ 17 28 32 TTTCTTAGCTGCCTACACGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,8] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [31.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [99,271] Score: 0.18/0.18 # # Final direction: R [0,1.69 Confidence: HIGH] >NC_018025 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 5267897 29 100.0 32 TATCAATAGT ............................. GAAGGAAAAGCGCTCATCCTTGAGCTGCGCGA 5267958 29 96.6 32 AGCTGCGCGA ............................C GTTTTGCAAGTCAATAAAACCGCCCCGTTTCT 5268019 29 96.6 32 CCCCGTTTCT ............................A GTTCACTAGCTATCACAGAATTGCGGGATACC 5268080 29 96.6 32 GCGGGATACC ............................T GTTGATGTGGTGCGGGATTCCGGAGGTACGCG 5268141 29 100.0 32 GAGGTACGCG ............................. AGATTTTTTCCGTTCACGATATTTCCTCCACA 5268202 29 100.0 32 TTCCTCCACA ............................. GAATAGCGGTGTGCGATCACCGTGGCGGAATT 5268263 29 100.0 32 TGGCGGAATT ............................. GTCTATTTTGAACTATTTTTTGGACTTCAGAC 5268324 29 100.0 32 GACTTCAGAC ............................. CCCGCATCCAACACGCTGAGGAACCGCTTGAG 5268385 29 100.0 32 ACCGCTTGAG ............................. GTAATGGAGATTCTCTTCCAGATCCGAGGCAA 5268446 29 100.0 32 TCCGAGGCAA ............................. ATGTTTCGAGCCTGGTCATACCCCGGGGGAGG 5268507 29 100.0 32 CCGGGGGAGG ............................. GTCCCGGTCGATGAATCCATCGTCCGAGGATC 5268568 29 100.0 32 TCCGAGGATC ............................. TTAGGTCTGGAAAAATCACATCGCAACTGGCG 5268629 29 100.0 32 GCAACTGGCG ............................. GAGGACAACATGATCGCACAGGAAAACAGCAG 5268690 29 100.0 32 AAAACAGCAG ............................. TTCCAGCGTTCGCCGGAATCCGCATTTCCGTG 5268751 29 100.0 32 CATTTCCGTG ............................. TTTGGGTGGTCCCGAATCGTGGGTCATTGGCC 5268812 29 100.0 32 GTCATTGGCC ............................. AATGCCTGGATCTGCCAGACAAGCTCTACACA 5268873 29 100.0 32 GCTCTACACA ............................. GTCTTTGAATCCGGACGGCACCCCGGTGATAT 5268934 29 100.0 32 CCGGTGATAT ............................. AAAAACGTGAGCGCAGCGGTGCACAGAAACCC 5268995 29 100.0 32 ACAGAAACCC ............................. ATCGTTATATGACAGGTCCCGAGCTGACCGGA 5269056 29 100.0 32 GCTGACCGGA ............................. CGAGGCGGAGCTTCGCAGACCGGCTCATGAAA 5269117 29 100.0 32 GCTCATGAAA ............................. ATCACTCGACCGATGATCTTCAATTCTTTGAC 5269178 29 100.0 32 ATTCTTTGAC ............................. AAGGCCAGGAAAGCCGATCCGGATGCGACGAT 5269239 29 100.0 32 ATGCGACGAT ............................. GAGGGTTAAGAGGTCCGGATTCTATAATGGAG 5269300 29 100.0 32 TATAATGGAG ............................. AGTATTTAAAAAATGATTACTTAAAAAGAGAA 5269361 29 100.0 32 AAAAAGAGAA ............................. AAACTGGTATTTCACTAGTAACTGCCCACACC 5269422 29 100.0 32 TGCCCACACC ............................. AATTTCTAATGCAAAGAGATGCTTTTACAGTA 5269483 29 100.0 32 TTTTACAGTA ............................. AAAGGGCACTGTCCAAACATTAGACGACTTCC 5269544 29 100.0 32 GACGACTTCC ............................. TTGTAGCATCCGCGCAGCAGCGCCCGGAATTT 5269605 29 100.0 32 CCCGGAATTT ............................. GCAAGATCCGGCAGGAATACGAGGCCGCTATT 5269666 29 100.0 32 GGCCGCTATT ............................. CTCATATTCGCCTGCAGGAAATTCAAGCCATT 5269727 29 100.0 32 TCAAGCCATT ............................. GTTTCTGACAGGCCCGTGACCGGGCCCGGCAA 5269788 29 100.0 32 GGCCCGGCAA ............................. ATCCTCGACACGAAAAACAACGCCGAGGTCGA 5269849 29 100.0 32 CCGAGGTCGA ............................. TTATGAGAATGAGAAGGAAAGTGTTGTTCGAT 5269910 29 100.0 GTTGTTCGAT ............................. CAGCATGCTG ========== ====== ====== ====== ========== ============================= 34 29 32 CTGTTCCCCACATGCGTGGGGATGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [55.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [92,618] Score: 0.18/0.18 # # Final direction: R [0.27,0.96 Confidence: MEDIUM] >NC_018025 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 911735 32 100.0 34 GAGCTCCGCA ................................ ATTTGATTTGAGCGCATATTCTGAGGAGTTCAGA 911801 32 100.0 34 GGAGTTCAGA ................................ TCATTATCAACCGATACAAGTTCCTTAAGTTCAC 911867 32 100.0 33 TTAAGTTCAC ................................ CATAATCCAGACCGATTGCTTGGCATGCGCGCC 911932 32 100.0 33 CATGCGCGCC ................................ TTGTAAAGATGTTGATTATTTTTGGGAGGTCGA 911997 32 100.0 35 GGGAGGTCGA ................................ AGTCAGTATACGAGAGCATGTGACGGTGGGTGACG 912064 32 100.0 35 GTGGGTGACG ................................ CCAATGTCAAGCGTAACAAATGATAAGGGTAAGAC 912131 32 100.0 34 AGGGTAAGAC ................................ TCATTATCAACCGATACAAGTTCCTTAAGTTCAC 912197 32 100.0 35 TTAAGTTCAC ................................ ATTCATCGGCAGCAAAGCGGCTCGTGCTGGCAAAG 912264 32 100.0 34 GCTGGCAAAG ................................ ATGTAGTCAAACTCCTCGTATTATTTGTCTCCTA 912330 32 100.0 34 TTGTCTCCTA ................................ AAGCTGACGAAGCGTTGATACTCGCAACAGAGCC 912396 32 100.0 35 CAACAGAGCC ................................ CAAGATCAACGTGGGTCGTACTTACCTGATGGTAA 912463 32 100.0 33 CTGATGGTAA ................................ TTTGCACTGTATTATGAGGGTAAAAGTCCTGGA 912528 32 100.0 33 AAGTCCTGGA ................................ TGATCGTGTTGAAGCGCGTCTCCGCTACGACAT 912593 32 100.0 34 GCTACGACAT ................................ CCCTCCAGAAAGTTCGGTATTATCAACCGTATTG 912659 32 100.0 34 AACCGTATTG ................................ CAGACAAGCAAGACGGCAAATACTTAGACTTGAC 912725 32 100.0 35 TAGACTTGAC ................................ ATATTCGGCACTTTACCATCCGGCATACTTCCCCA 912792 32 100.0 33 TACTTCCCCA ................................ GGGTGTTGGGAGTAATGGTCTCCTACCGACCGG 912857 32 100.0 34 TACCGACCGG ................................ AACCCATTGAATGTTAGAATGTAGTGCGGAAAGT 912923 32 100.0 33 TGCGGAAAGT ................................ TCGATTAGCGTCCGCGTTCAGCTTATTGCAGAC 912988 32 100.0 35 TATTGCAGAC ................................ CATTCCGATGATAACCGTGACTGCCGATTACCAGA 913055 32 100.0 34 GATTACCAGA ................................ TTTCATTCCGATTTCAGGACGTAATGCTCGCCTC 913121 32 100.0 34 TGCTCGCCTC ................................ ATCAGTGAATTTGGAAAACGCTTTATAACCGCCT 913187 32 100.0 35 ATAACCGCCT ................................ TGTCTGCGTCTTTTCTTCGCTAACACAACGGAACA 913254 32 100.0 34 CAACGGAACA ................................ ATATAACCGGCTGTTCGAATAGGAATGTTATCTT 913320 32 100.0 32 ATGTTATCTT ................................ AAGTTATCCACAGGTTATTAACAGCTTTATCA 913384 32 100.0 35 AGCTTTATCA ................................ ATCCCCAAGACTTAAGAGTGTTCAAAACTCCGGAA 913451 32 100.0 34 AACTCCGGAA ................................ AAGCCATGAAAATCAAATACGCCAATGAATTACT 913517 32 100.0 34 ATGAATTACT ................................ AAGGGACTGACGGCCAAGCGTTAATAGTCGATTC 913583 32 100.0 35 TAGTCGATTC ................................ TCCAATGAACACCGTCAAGGATTGGAAACTCAAAC 913650 32 100.0 34 AAACTCAAAC ................................ ACGAGTGCAAGTTCCGATCCTGCTGTATTGTCTA 913716 32 100.0 34 GTATTGTCTA ................................ TCAATCCTGAGCGTAGTATCCCTTGCGATTGGTG 913782 32 100.0 33 GCGATTGGTG ................................ ACTACCGAGCATTGTAAAAAAATCTGATTGCAA 913847 32 100.0 32 CTGATTGCAA ................................ TATGCTCCGGAGGGGGTTAGATGAAGTGTAAA 913911 32 100.0 35 GAAGTGTAAA ................................ TGCACGGGATGGTTTATCGAGTTGAGGATGTAAAG 913978 32 100.0 34 GGATGTAAAG ................................ AACACAATCTTGACGAAAGGGCAGACGAGTTATG 914044 32 100.0 34 ACGAGTTATG ................................ TGGCCGACTATCTCTTCCATGTCCAGGTTTTCGC 914110 32 100.0 33 AGGTTTTCGC ................................ AATATTCGATACAAAATCACAAGTGATGGCAAA 914175 32 100.0 33 TGATGGCAAA ................................ ATAAACGTCAATGGCGAACAGGCTAAAATTGGC 914240 32 100.0 34 TAAAATTGGC ................................ TTCTAAAGGATGGGCAAAGATTCTTAATGGTCCC 914306 32 100.0 33 TAATGGTCCC ................................ ATTCTACTTGAGAAAGGTGGATCTCCCACTACA 914371 32 100.0 34 TCCCACTACA ................................ TGATAGAAGATTTGACAAATGGCAGGGTTACAGT 914437 32 100.0 34 GGGTTACAGT ................................ AGGAAGGATGTTTCGTGAAACTGTTATGATGCAT 914503 32 100.0 38 TATGATGCAT ................................ GGTTTTTTGGCATCGGGGCATGGGATCATCCGCTGGGT 914573 32 100.0 34 TCCGCTGGGT ................................ ATGATTATGTTTTACCAAGAAGACAGGATATATG 914639 32 100.0 34 AGGATATATG ................................ TCCCAACATGGGGCCGATCTCAGGAAGGATCTCG 914705 32 100.0 34 AAGGATCTCG ................................ TTGGTAATCTCTTGTCCAAGGTGAAGGCTTCAGC 914771 32 100.0 35 AGGCTTCAGC ................................ GCTTCTTACAGCGCTTAACCGGAAGGAAAGGAGGA 914838 32 100.0 35 GAAAGGAGGA ................................ GAGGATTGGGATGTTTACGTTCCGACCGTGGCATG 914905 32 100.0 33 CCGTGGCATG ................................ CAGTGAAGTGATTGAACAGAATGCCGTTGCACG 914970 32 100.0 33 CCGTTGCACG ................................ AGGGACACCTATTCGTGGAACGTGCTGGAGATG 915035 32 100.0 33 GCTGGAGATG ................................ CCTGTTCACGGGGGAATCACGTATGCCGACAAT 915100 32 100.0 33 TGCCGACAAT ................................ AGTATAGATCAAGCAGAAAAGATTCGCAAGATT 915165 32 100.0 33 TCGCAAGATT ................................ AAGACCGCAGCCTGTCCATAGTTGTTGATCTGC 915230 32 100.0 34 GTTGATCTGC ................................ AAAAGTGTACGCAGCGCTTGACGATCTGACCAAA 915296 32 100.0 33 TCTGACCAAA ................................ AACGAAGATAATCCGTTTGAATGCTTCGAGACG 915361 32 100.0 34 CTTCGAGACG ................................ TTGTTTGTCCTAATGGGTTAATATAACATCCCAT 915427 32 100.0 39 AACATCCCAT ................................ TCGTTAATCGATGCCTTACGCTCGAAACCCACGGCTTCC 915498 32 100.0 39 CACGGCTTCC ................................ TCGTTAATCGATGCCTTACGCTCGAAACCCACGGCTTCC 915569 32 100.0 34 CACGGCTTCC ................................ CTCCTCGGGAACTATACCACTGATGGAGACAACG 915635 32 100.0 33 GGAGACAACG ................................ AGTTTCCCTCCGACTTTTTTCCTGATCTTCCTT 915700 32 100.0 32 GATCTTCCTT ................................ ACTTGTTCGGGCATGACCGCTCCGACTACGGC 915764 32 100.0 35 CGACTACGGC ................................ GATTTTATCATTGAAAACTATGTCCAACCCAAGGC 915831 32 100.0 34 AACCCAAGGC ................................ GATCATGTTGTGGATTCCCGCCAAGGGCACGATA 915897 32 100.0 33 GGGCACGATA ................................ ATCCCTCGTAGTCAAGTAACAGCCCGTGTCAGG 915962 32 100.0 34 CCGTGTCAGG ................................ TCTCTCCATGTTGTGCACATAACTAATCAGACAC 916028 32 100.0 33 AATCAGACAC ................................ AGGATGCCCTGGCGTTCGTCACCGAGCCAGGGC 916093 32 100.0 33 GAGCCAGGGC ................................ CAGGAAGTATTTACCAGAGGACATGACTAGATA 916158 32 100.0 35 TGACTAGATA ................................ CAATATATACCCTATAATAGAGTACTGACCGGCTT 916225 32 100.0 35 TGACCGGCTT ................................ AAGACGAATTTCTCCTATTCCAAGAAAACTTGATA 916292 32 100.0 33 AAACTTGATA ................................ CCCTACAGCAGCAACGATGTCGGCGGCAAACTC 916357 32 100.0 35 CGGCAAACTC ................................ CAGAGTGAACCGCACGTGGTCTGCATTACTACCGC 916424 32 100.0 34 TTACTACCGC ................................ CCTACCTGAGTAAGCGCAAGGAGCAACGTAGGCC 916490 32 100.0 34 AACGTAGGCC ................................ TATTCAAGGGTAGCCCGCAGCGTCCCCATGAAGT 916556 32 100.0 34 CCCATGAAGT ................................ GAGCCGGAGGACCGGCCATGAAAGACGGTAGTTT 916622 32 100.0 31 ACGGTAGTTT ................................ TTGACTTGTCTTTTGTGGAGAGGTTTATCAC 916685 32 100.0 35 GGTTTATCAC ................................ AAAATCTCACGGCGCGCCGCTTCGCAGCCACGGGG 916752 32 100.0 33 AGCCACGGGG ................................ CAGAAACACGCTATACAATCCCTGTCGGCCAGT 916817 32 100.0 36 GTCGGCCAGT ................................ CATTCGTGCTCCTGGTTTTCGGCTGCCGGGCTGCAT 916885 32 100.0 35 CGGGCTGCAT ................................ CTCACGGTTATCACCGACACCGTTATCTCTAACGC 916952 32 100.0 33 TCTCTAACGC ................................ CCTCTGGCCTACGGCGGAAACCCGCCTAAAACG 917017 32 100.0 34 GCCTAAAACG ................................ GTAAAGGTGGATTTCATGATCTCAAAGATACAGA 917083 32 100.0 35 AAGATACAGA ................................ AATGATCGGTGGGAGCAGGAAGGCGTGTTTCTCGA 917150 32 100.0 33 TGTTTCTCGA ................................ CTTTCAGGTCTTACACCTACCGGTCCGAATCAG 917215 32 100.0 34 TCCGAATCAG ................................ ACCGCACCATAACAGGAACGGAGGCATGTAGAAC 917281 32 100.0 36 CATGTAGAAC ................................ TCGTTTAGGAATGCAAACGATGGCACGGGGGTTGAC 917349 32 100.0 34 GGGGGTTGAC ................................ AGGTGCGTCCGTAATGGGCGCCGAGTTGAGCGGT 917415 32 100.0 36 GTTGAGCGGT ................................ TCTACGACCACTTACCGCAAGATCAAAAGAAGCCGC 917483 32 100.0 34 AAGAAGCCGC ................................ ATCTTTTCCAAAAGCAACTTGATCTGATGCTCGG 917549 32 100.0 35 TGATGCTCGG ................................ ACCGGAGTATTTCCTGAATCCTCGAAATGCCCTGT 917616 32 100.0 34 AATGCCCTGT ................................ AGGACAGGCTCAACCGCAAGGGATCACCGGAAAA 917682 32 100.0 34 CACCGGAAAA ................................ GAGCAATGCTGTAAATGCTGGGAGAACTATCAAA 917748 32 100.0 33 AACTATCAAA ................................ TCAATTGCTTTTTGAAGCGGGTAAAATTTAACT 917813 32 100.0 33 AAATTTAACT ................................ GCTTCTAATTTCAGCTTCCAAAGGGAATCCACA 917878 32 100.0 35 GGAATCCACA ................................ TATAGGTCGGAGAAGCATTCCGGCAGTCCATTCGC 917945 32 100.0 35 GTCCATTCGC ................................ TCTGTGGTCAAAGATCACCTTCAGGAAGGGTCCAC 918012 32 100.0 34 AAGGGTCCAC ................................ CGAGACCTACGGCTTCCCTGCCGATTGGGAACAA 918078 32 100.0 33 TTGGGAACAA ................................ CTCGAACTCGACGTGCTCAACTCCAAAGAGCTT 918143 32 100.0 33 CAAAGAGCTT ................................ AGGTTTTCCATGCTACCAGGATTGACTACCAGC 918208 32 100.0 34 GACTACCAGC ................................ TTTACTATCTCGGAAACACGCATGCCGGTTCCGA 918274 32 100.0 34 CCGGTTCCGA ................................ AGCTTTTGAGGCTTCCACGACAAAGAGAACCATC 918340 32 100.0 34 GAGAACCATC ................................ ACCCCAAAGCTGGTCAGAGAAGTTCTTGAACCGT 918406 32 100.0 33 CTTGAACCGT ................................ ATTGGTGGGAACCTTTATTACATCCAGGATGTG 918471 32 100.0 33 CCAGGATGTG ................................ AAGTCAAAAGATGCACTGTCGTTTGCGGAGAAA 918536 32 100.0 32 TGCGGAGAAA ................................ CGCATTCATGAGCGCAATATCCATAGTGTTCT 918600 32 100.0 34 ATAGTGTTCT ................................ TCGTTGAGCTCGAGCGGTCCTAGACATTCCGGAC 918666 32 100.0 34 CATTCCGGAC ................................ TCCCAGTAAGTGTAGAGTCCCGCCAACGTAGATC 918732 32 100.0 35 AACGTAGATC ................................ TATGCTAGAATTCCTCTTTGCAGCGTTGCGCTGAG 918799 32 100.0 35 TTGCGCTGAG ................................ ACGGTTCGAGCCCCCTGGCCGTTCACGCCATCAGC 918866 32 100.0 34 CGCCATCAGC ................................ TCCGTCCCCAACCTGAATCTTGACCGCTTTCCCA 918932 32 100.0 35 CGCTTTCCCA ................................ AATCGATCTGGCAGTGCGGAGTAAACGGCTCATCA 918999 32 96.9 CGGCTCATCA ..............................G. AACTGGAATGTGAGGGTTTCAGAAACCGGGCAGGTA ========== ====== ====== ====== ========== ================================ 111 32 34 GTCGCCCCTCACGCAGGGGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [6,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.60,-6.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [51.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [190,357] Score: 0/0.18 # # Final direction: F [5.92,0 Confidence: HIGH] >NC_018080 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1398760 28 100.0 32 TTCAGGGCTA ............................ GCAGCGATCAACGGCCATATCTACGAGCTGGA 1398820 28 100.0 32 ACGAGCTGGA ............................ CTGACCCGCCGCATGGTGCTGGGCCTGCAGGA 1398880 28 100.0 32 GCCTGCAGGA ............................ TGCCAGCGGGCGGTATGCGCCTGCGGAGCTTC 1398940 28 100.0 32 GCGGAGCTTC ............................ TCGATCAGCTTCGCGGCGCGGGCGGTGTATTC 1399000 28 100.0 32 CGGTGTATTC ............................ ATGTACGAAGTGCAACGCAATACCTACGTCCC 1399060 28 100.0 32 CCTACGTCCC ............................ TTAGCGGTCCGTCCTCGGTGACGGGGCCTAAG 1399120 28 100.0 32 GGGGCCTAAG ............................ AGGAACGGCGTGCCCTTTTCGTTGGAGATCGT 1399180 28 100.0 32 TGGAGATCGT ............................ TAGCGATCGTCAGGCAGTACCTGGTGCAGTTC 1399240 28 100.0 32 GGTGCAGTTC ............................ TGGTAGCGCTTCGGCTTGTCCGGCCCATCGGG 1399300 28 100.0 32 GCCCATCGGG ............................ ACGAGGCATGGTTGAATCGCCCACAGGGCGGC 1399360 28 100.0 32 ACAGGGCGGC ............................ TTCAGCTTCTGCTTCAGCCGCGGATCGCTGAT 1399420 28 100.0 GATCGCTGAT ............................ CTCAAGAAAGA ========== ====== ====== ====== ========== ============================ 12 28 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.57%AT] # Reference repeat match suggestion: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [60.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [272,1108] Score: 0.18/0.18 # # Final direction: F [1.14,0.18 Confidence: HIGH] >NC_018080 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2794688 28 100.0 32 TTTTGGTCTA ............................ ATGATCGACCCAGCAGACAAGCAAACCCAAGC 2794748 28 100.0 32 AAACCCAAGC ............................ TTTCAGGGCACGCCTTATCTCGGCCTGATCTT 2794808 28 100.0 33 GCCTGATCTT ............................ ATCCCGCAAAGCCCCGCAGGACAATGCCTTGAT 2794869 28 100.0 32 ATGCCTTGAT ............................ GAGGTCCAGGAGCTACGCCGCCAGGCCTATCG 2794929 28 100.0 32 AGGCCTATCG ............................ TGTCTCCGGCTAAATGTCCGCCGCCCTGGAAT 2794989 28 100.0 32 GCCCTGGAAT ............................ TCGCCGCCCTCCATGGTCTGGCTCAGTTGGCC 2795049 28 100.0 32 TCAGTTGGCC ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 2795109 28 100.0 32 AGGACAGGCT ............................ AGCAGTTCGAATTCGTCATCCAGTTCTAAGGT 2795169 28 96.4 GTTCTAAGGT ........................A... TGTCCCGAAGT ========== ====== ====== ====== ========== ============================ 9 28 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.57%AT] # Reference repeat match suggestion: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [396,186] Score: 0.18/0.18 # # Final direction: F [1.46,0 Confidence: HIGH] >NC_018092 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 112273 30 100.0 37 AAAGCCCCCT .............................. GAATGTTGCTCAATGCAAAGGGCTCACCGCTGCTGGT 112340 30 100.0 35 CGCTGCTGGT .............................. TTGAGTTGAAGCGCCACTCTTTGAAGCCTATCAGA 112405 30 100.0 37 GCCTATCAGA .............................. GCTTCAGGTCTTCAATATTCAATCCCGGTCCCTTTCA 112472 30 100.0 37 GTCCCTTTCA .............................. TCGGGTCCCTTGGAGTTCCGAACGGGCTCCCGAGGCT 112539 30 100.0 38 TCCCGAGGCT .............................. TTGATTCCCTTATAGATGTTCGTTTTCCACACAACTAA 112607 30 100.0 39 ACACAACTAA .............................. CTGTATATCCTTTCGTTTGTCTTCCACACTTTCAACTCT 112676 30 100.0 38 TTTCAACTCT .............................. TATGTTCGTTCTCGTTCACTGTTATTCTCTTTTGTTCA 112744 30 100.0 37 CTTTTGTTCA .............................. AAAAACTAAAAAAAGAAGAGGTGGTGGTGAAGAATGT 112811 30 100.0 38 TGAAGAATGT .............................. CTTTTCCTGCTCCTGCTTAACAAAAGAATTGTTGGCTT 112879 30 100.0 36 TTGTTGGCTT .............................. GGAACCACAGACCCAATCGCAGTAATTTGGGTTGAC 112945 30 100.0 37 TTGGGTTGAC .............................. TCATGTATTTTTCTTCTCCCAAATCCAGGGGCTCCCA 113012 30 100.0 37 GGGGCTCCCA .............................. TCTCAATTGGGGAGTTGCTTTAATGGCTTTTGGAGTG 113079 30 100.0 39 TTTTGGAGTG .............................. AAGATAATCGCTCAACAGTTTCAATGCTATACTTGTCAA 113148 30 100.0 38 TACTTGTCAA .............................. TAATCTCAATAACTTTGGCTTCTTTTCTGTGTTTGTTT 113216 30 100.0 47 GTGTTTGTTT .............................. GATTTCAGAGAACAACGGTGAATTTAAGAATTTCCTGACTTTCAATT 113293 30 100.0 37 ACTTTCAATT .............................. ACACGAACTCCCAACATTCTTCACCACCCCTCCTTCT 113360 30 100.0 39 CCCTCCTTCT .............................. TTGCTGATTACGAAGGCATATCCTTCAATTGTTGCTCGT 113429 30 100.0 39 TGTTGCTCGT .............................. ATAGACTTCCCTTGTGTACTTTAGTAGTTCTGCAAGTAA 113498 30 100.0 43 CTGCAAGTAA .............................. GAAGGATAGCAGGATCTAATGTAATTCTCGCGACATCTTTAAA 113571 30 100.0 39 CATCTTTAAA .............................. GATGAGGAGTGAAAGTTCTTGCAAAGCCCTTTCCAAAAG 113640 30 100.0 36 TTTCCAAAAG .............................. AGTATCGCTACTGTTTTCATGCACCACTGCACCCAT 113706 30 96.7 36 CTGCACCCAT ..............G............... AATCAATCCGAGAATCGAATTTTCCTATACGCTTTT 113772 30 100.0 35 ATACGCTTTT .............................. TTTGTTTTTGCTCCTGTGTCTTGTGGTGATAAAAT 113837 30 96.7 GTGATAAAAT ...A.......................... CAAAAGAATT ========== ====== ====== ====== ========== ============================== 24 30 38 GTTCCAATAAGACTACAAAAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [509,265] Score: 0/0.18 # # Final direction: F [5.41,0.27 Confidence: HIGH] >NC_018092 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1465386 30 100.0 38 NNNNNNNNNN T..CA.T..TAT....G............. CGTAGATTTCTTTTGGCCAGTGTATCAAGGCCAACCGT 1465454 30 100.0 47 NNNNNNNNNN .............................. AATTGTGGAAGTTCCATCTCAGATTAAATCAGATGTGGGGGCCTCTC 1465531 30 100.0 43 NNNNNNNNNN T..CA.T.CTAT...AGT............ CATGCCCCGAGCCCCCGGCTCGGGGCACTCATCTTGGAAACTC 1465604 30 100.0 39 NNNNNNNNNN .............................. ATTGCATGATCAGTTTACTGTCTCCTTACCAGATTCTCT 1465673 30 100.0 49 NNNNNNNNNN .............................. GTGTAGGATGTAGTCTAGCCTTCTATGTCCCGTGATTTTGCTGATTATT 1465752 30 100.0 37 NNNNNNNNNN .............................. ATGGTATTCTCACCTGGAAGAACGACGTAACTGCTGA 1465819 30 100.0 37 NNNNNNNNNN .............................. GAGCAACGCTGAGAACCAAAATAATCGCCGCACTCTA 1465886 30 100.0 37 NNNNNNNNNN .............................. AGACATGAAAAACTGTTTGGAGGAGGGGACAATGTTC 1465953 30 100.0 40 NNNNNNNNNN .............................. TGACCAGCAAGCTCTTCGTTGCAAAGAACACTATCACAAA 1466023 30 100.0 42 NNNNNNNNNN .............................. ATGAAAACAACACATGTGGGGTGGTTGGAATGGCTTGGAAAC 1466095 30 100.0 42 NNNNNNNNNN .............................. TGGACACCTTGCCTTATACCTATATAATAACCTAGCATTATC 1466167 30 100.0 49 NNNNNNNNNN .............................. TCAATGACGAGCTTGACGACATAATTCGACAAGTTGCTCTCAATCCAGT 1466246 30 100.0 38 NNNNNNNNNN .............................. TTGTCGGATGAGGAGGTGAGGGAGTTGGAGAGGAAGTT 1466314 30 100.0 37 NNNNNNNNNN .............................. CCAGTTGAGGCAACCCTTGCAAGGTTTGGGGTTGATT 1466381 30 100.0 40 NNNNNNNNNN .............................. TGAAGTAGACGTTGAGAACGGTACCTTCATCGTGGTGGTG 1466451 30 100.0 38 NNNNNNNNNN .............................. CATCTTGTCCCTAAGGGGAATTTGGGCATTTCTACTCC 1466519 30 100.0 37 NNNNNNNNNN .............................. ATAGAGTACAGAGGATTGTATGCTCTTAGGGAGACAG 1466586 30 100.0 37 NNNNNNNNNN .............................. ACAGAGAGCTGGACTAGTAGAATGGAAGAACTTTGTG 1466653 30 100.0 38 NNNNNNNNNN .............................. GCACTACTTGAGCAACCTCCTTCATCAATTCTAGCTCC 1466721 30 100.0 37 NNNNNNNNNN .............................. GTGGGTTGAGGGAAGAAAGGCTGCAGGAGATGAGACC 1466788 30 100.0 37 NNNNNNNNNN .............................. TTCCCAAGACACCCCAGGAATTTCATCTACTCCATCA 1466855 30 100.0 38 NNNNNNNNNN .............................. GAGGGGTGATGTTTGGCTGAGCGGATTGCGTTTAATAG 1466923 30 100.0 37 NNNNNNNNNN .............................. TAAGAAACGCTCCATACACCATTGAGAACCCAACCCT 1466990 30 100.0 38 NNNNNNNNNN .............................. CTCCACAATCATCCCCATGCTTGTGCCCAACGCTCCAG 1467058 30 100.0 37 NNNNNNNNNN .............................. TCAAAAACATAGACGACCCAGAGTTAAGGAAAGTGTT 1467125 30 100.0 36 NNNNNNNNNN .............................. AGTCAAGTTTTGACTGGATCCGTATCCGCAAGTATG 1467191 30 100.0 37 NNNNNNNNNN .............................. AGGAACTATTTGGGGGGTATTACCGCAAGAAATACAG 1467258 30 100.0 38 NNNNNNNNNN .............................. CTGGAATTCAACAGTGGCAAAGGTTCTATCAGGAATAA 1467326 30 100.0 36 NNNNNNNNNN .............................. TCGCTTGAGGGAGCGACGGCTCAGGCTCAGACCGCT 1467392 30 100.0 37 NNNNNNNNNN .............................. AGGTTCAGGCTGGGAGGCTTGACCCGAGAATAGCGCA 1467459 30 100.0 35 NNNNNNNNNN .............................. TCCTTCCAGAGCCCGTTCACCGTGTCCACGCTGTC 1467524 30 100.0 38 NNNNNNNNNN .............................. CAAAAATTTTTCATTGCGGGGGGTTCTGACTAATTTGT 1467592 30 100.0 38 NNNNNNNNNN .............................. TTATTTCTGATGGTGTAAGAGTTAGACTAAACAACTCA 1467660 30 100.0 39 NNNNNNNNNN .............................. CTGCCGGCCCCCGGCGGGGGTCTAATGACCGCATAGGAG 1467729 30 100.0 37 NNNNNNNNNN .............................. AGAGATGATTGAAATTTTTACGATCAAAGAGGTTCGT 1467796 30 100.0 38 NNNNNNNNNN .............................. ATAGTATACCCTTGACCTTTCAATCCCTTATAGATTCT 1467864 30 100.0 37 NNNNNNNNNN .............................. AAAAGCGGTGAGGGAAAAGAAAAAACGGGCAAAAAAA 1467931 30 100.0 36 NNNNNNNNNN .............................. TATTTTTTTTATGTGCAGTAATCGGCAATTTGCTAA 1467997 30 100.0 37 NNNNNNNNNN .............................. CTGGGCAAGTTCTGGCCTATACTGTCTCCTAATGTCT 1468064 30 100.0 37 NNNNNNNNNN .............................. ATATACCTCAAGACCAACCACACTGGATATGCAGCAA 1468131 30 100.0 37 NNNNNNNNNN .............................. AGACACATTAGAGCAGTTATAAAAACACACGGCACGC 1468198 30 100.0 38 NNNNNNNNNN .............................. ACCCGTTCAATTTTTTCTTTACTTTTGTAAAGTTTTGA 1468266 30 100.0 39 NNNNNNNNNN .............................. TCGACTGTAATAACGTCAATTGTCGAGAGGACAGTAGTG 1468335 30 100.0 36 NNNNNNNNNN .............................. AGGGCTGGTGGTGGGTCAAGTTCAACGCCTCACTAC 1468401 30 100.0 38 NNNNNNNNNN .............................. AGCGAAAGCCTGGGAAGAAAACCTTTACGCACATTTCC 1468469 30 100.0 37 NNNNNNNNNN .............................. TGTTTATGTTCGTGTCAGGCTTATTGTTCATTAACGC 1468536 30 100.0 40 NNNNNNNNNN .............................. TTGCCAGTATCCGAAGATTCAGAAAAATTCAGCATAAGAG 1468606 30 100.0 36 NNNNNNNNNN .............................. TCGACCCAGAGCGGGTTGTAGCAGTAAAGTATGACC 1468672 30 100.0 38 NNNNNNNNNN .............................. GGAGTATTTTGGTATGAAAGTTTCGGGTGCAGAACCGG 1468740 30 100.0 36 NNNNNNNNNN .............................. TGCACTTTTCTATACACGAAAAGTTTATAAACTTTA 1468806 30 100.0 48 NNNNNNNNNN .............................. CAGCTCTGGTCAGATCAGATTGCTTAAGACAAGAAATGAATCATATAA 1468884 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 52 30 38 CTTTCAATTCTATTTTAGTCTTATTGGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:73.33%AT] # Reference repeat match suggestion: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [61.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [195,523] Score: 0.18/0.18 # # Final direction: R [0.27,5.59 Confidence: HIGH] >NC_018027 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================================== ====== 2336706 38 100.0 19 NNNNNNNNNN .........C..........TT...............C AGGGGTCGTCGAGTGTGGT 2336763 38 100.0 19 NNNNNNNNNN ...T..T..G..........T...T..GACA......A ATTCGTCGGTGGAGGTAGC 2336820 38 100.0 19 NNNNNNNNNN .........G..T......................... TGACTGAGGCGGGTGCGGC 2336877 38 100.0 19 NNNNNNNNNN ..................C..C................ TGACTGAGGCGGGTGCGGC 2336934 38 100.0 19 NNNNNNNNNN ...................................... TGACTGAGGCGGGTGCGGC 2336991 38 100.0 19 NNNNNNNNNN ...................................... TGACTGAGGCGGGTGCGGC 2337048 38 100.0 19 NNNNNNNNNN ...................................... TGACTGAGGCGGGTGCGGC 2337105 38 100.0 19 NNNNNNNNNN ..................C..C................ TGACTGAAGGGGCTGCGGC 2337162 38 100.0 19 NNNNNNNNNN .....................C.......CT....... CGGTGCCCGCGGGTGCGGC 2337219 38 100.0 19 NNNNNNNNNN .....................C.......CT....... TGACTGAAGGGGCTGTGGC 2337276 38 100.0 19 NNNNNNNNNN .............................CT....... CGGTGCCCGCGGGTGCGGC 2337333 38 100.0 1 NNNNNNNNNN .........C..T.....C..C..C.CG.C....A.CT NNNNNNNNNN ========== ====== ====== ====== ========== ====================================== 12 38 19 GACGCCGCCTGCGCCGGGTGCGCCGGGTGTGCCGGTGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-12.00,-8.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [18-15] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [26.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2142,43] Score: 0.18/0.18 # # Final direction: F [0.82,0.78 Confidence: LOW] >NC_018092 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 426543 30 100.0 35 GTGGTTCGTT .............................. AGCTGAGAAGGTGTCGAGGGATGTGAAGGCTAGGT 426608 30 100.0 37 AAGGCTAGGT .............................. GCGGGAGCAAGGTGTTGCAAACCTTGATAGAGTTCCA 426675 30 100.0 38 TAGAGTTCCA .............................. TGGGCATTGATTTCGACATTGCAAAAATTTTTCATTGC 426743 30 100.0 42 TTTTCATTGC .............................. TCGGAGTTACCGATTGCTGAAGTAAATGAGAGATTCAAGATA 426815 30 100.0 37 ATTCAAGATA .............................. GTTGTTAATGTATTCGTTGAGGCAGGGAAGTATAAGG 426882 30 100.0 38 AAGTATAAGG .............................. GACTTTTGTATTACAAAATCAGCGTAGTTTACTATCAG 426950 30 100.0 36 TTACTATCAG .............................. ACAAACACAGAAAAGAAGCCAAAGTTATTGAGATTA 427016 30 100.0 38 ATTGAGATTA .............................. TAGCTAATGTCCATGAGAGTGTGTGAAAAGCTAGTGAA 427084 30 100.0 38 AGCTAGTGAA .............................. GCCAAGCTAGTTATTGATGTGTTGCATACCGTATACAC 427152 30 100.0 38 CCGTATACAC .............................. TATTCATGGCATGTGGCAATGTTTCTTGATAGGGCACT 427220 30 100.0 40 ATAGGGCACT .............................. CTTTCTTTGCATCTTTTGTATATCCCTTAGACCCAAATCT 427290 30 100.0 36 ACCCAAATCT .............................. TTAATTCTTGGGAAAAACAGGGATTATATTATCCAC 427356 30 100.0 38 TATTATCCAC .............................. AGGAACGGTCTCCAAGAGGACTTGGCGAATTACGTGAC 427424 30 100.0 37 ATTACGTGAC .............................. TATTTTGTCCTACTTTGTATGACAATGTCTTATGTGG 427491 30 100.0 38 TCTTATGTGG .............................. ATATAATAGGTATGTAGATAAATCACCCTCTGAGAAGG 427559 30 100.0 38 TCTGAGAAGG .............................. CGAATTCGATAGATTCGAGAAGCTTGTAAGGGTAGAGA 427627 30 100.0 37 AGGGTAGAGA .............................. CTATTATATATACAGATGTCTTGCATTATGATGCTTA 427694 30 100.0 37 ATGATGCTTA .............................. CGCTATGATATGCTGACGGATGAGGAGTATGCTGAGA 427761 30 100.0 38 TATGCTGAGA .............................. TGAAAATAGTGGACGTCATCCCTCCAAGCCAAGTGCCT 427829 30 100.0 37 CCAAGTGCCT .............................. TATGACTCTGACACAGGTACTAAAATCGAGGAGTTCC 427896 30 100.0 37 GAGGAGTTCC .............................. CACAAGCACTAGTCCTGCTAGCGTTTTCAGGAGTGGT 427963 30 100.0 36 CAGGAGTGGT .............................. ACGAGCATTAGGACTGTGTTATTGTTTTGATCTTTT 428029 30 100.0 37 TTGATCTTTT .............................. GTGAGCGCCCTCAAGTACTACGTGAACCATTCCCCTT 428096 30 100.0 39 CATTCCCCTT .............................. CTCAATGCAAAGGGCTCACCGCTGCTGGTGAGTATGGTC 428165 30 100.0 37 GAGTATGGTC .............................. CCTTGATCTCAGCATGTCCAGAAACGAAGTCCTGGCT 428232 30 100.0 AGTCCTGGCT .............................. AGGGGGCTTT ========== ====== ====== ====== ========== ============================== 26 30 37 CTTTCAATTCTATTTTGGTCTTATTGTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:73.33%AT] # Reference repeat match suggestion: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [460,519] Score: 0/0.18 # # Final direction: R [0,5 Confidence: HIGH] >NC_018092 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 499027 30 100.0 37 NNNNNNNNNN .............................. AGTGAAGAATTTGACGTACAAATGTCCTTAGTGGAAC 499094 30 100.0 37 NNNNNNNNNN .............................. TGATGTAGATCTCTGTACCTTTCGGGACCTGTAGGTC 499161 30 100.0 39 NNNNNNNNNN .............................. CAGTTCTACTTTGATAAGACTGTGGTGGTTAATGGTAAA 499230 30 100.0 37 NNNNNNNNNN .............................. CTCTTATGGTGAAGCTTTCGACATTTTCTTTGGATGT 499297 30 100.0 37 NNNNNNNNNN .............................. CGTCTTCTCTGAGATTCTTGGCTCGTTCTAGAGCCAT 499364 30 100.0 37 NNNNNNNNNN .............................. GAGAGTATCAGGAGCTTTCTGACCTCCTTATACAGCT 499431 30 100.0 38 NNNNNNNNNN .............................. GACAAAGAACTCCCTAGCGTCCCTCCCCGTGTACTTGA 499499 30 100.0 37 NNNNNNNNNN .............................. CCACACTTCTATCTCAGCACCCCCAAACGTGAAACTG 499566 30 100.0 36 NNNNNNNNNN .............................. TTCTGCCGTCCCTTTTCTCGACGAACCTCATACCGA 499632 30 100.0 39 NNNNNNNNNN .............................. TTGAGGAGATGCTTACTGCGGTTAAAAAGGACATTGCAG 499701 30 100.0 37 NNNNNNNNNN .............................. GGTGCTTGAGCTCGCTAGTGCCCTCCTCCTGGGCTAT 499768 30 100.0 38 NNNNNNNNNN .............................. TAATGCTGTACAGGATTGACAAGGAGGCTTACGCTTCT 499836 30 100.0 37 NNNNNNNNNN .............................. TACTATAGGCGGAACTCCCTGCAATGAAAAATTTTTG 499903 30 100.0 37 NNNNNNNNNN .............................. GCACCTTCTTCACCATCGCCGTCTGGATTGCTGGTAG 499970 30 100.0 37 NNNNNNNNNN .............................. TGTTTTCGAATATTGTTACTTCTTGTGTATCTCTGAA 500037 30 100.0 37 NNNNNNNNNN .............................. ATTCACTGGGTTCTTCAGAAAGTTCATAAATTCACCG 500104 30 100.0 34 NNNNNNNNNN .............................. CCTTCTTCTTTTTAAATTTTTTAATTTTCATTAA 500168 30 100.0 41 NNNNNNNNNN .............................. TGATCTAGGCGTCGGGTAATTCTGTAAGGTCTCTGGCTCAT 500239 30 100.0 43 NNNNNNNNNN .............................. ATGACTATCAGGATGATAATCGTTTTTTTATGCTCGCTTACAA 500312 30 100.0 37 NNNNNNNNNN .............................. ACAGGCAATTAGAAACTCTTTCAAAAACGCAGTTCAG 500379 30 100.0 37 NNNNNNNNNN .............................. TAGTGTAACAACATCATATGGAAAGTCTCCCACGTTG 500446 30 100.0 38 NNNNNNNNNN .............................. GGGTTTACTCCGAACGGTGTTCTGCTAACTGATATAGT 500514 30 100.0 36 NNNNNNNNNN .............................. ACTTAGCCACCTCCGAGATGTTTTCGTAATAGTTAT 500580 30 100.0 37 NNNNNNNNNN .............................. TTGTAGGCTCGTGGACTTGGCTTCCACACAACTAATT 500647 30 100.0 37 NNNNNNNNNN .............................. CTTCTTCTCTTACAAAGTCTTCAATGATAGTAAATAT 500714 30 100.0 38 NNNNNNNNNN .............................. TGGGGTCTCGTCGCAATCGGTGCAGTATTCCTAAGCCT 500782 30 100.0 36 NNNNNNNNNN .............................. GCAATTGGGCTTTTTGTAGCTGGAATCTTGGGTGAT 500848 30 100.0 36 NNNNNNNNNN .............................. AAAGATTCTGATTCCCGAAAGGCTTTTTCCGACACC 500914 30 100.0 37 NNNNNNNNNN .............................. TCACCATTACCTCCTAATCCAATCATCTAACATTGAA 500981 30 100.0 38 NNNNNNNNNN .............................. TAACTCTAATGTTTCATCGACTAACATGTCAATTTCAT 501049 30 100.0 38 NNNNNNNNNN .............................. TTGGATTTGCTACTCTCACGTATAGGGTCCCTACCTCT 501117 30 100.0 35 NNNNNNNNNN .............................. TGATATAGTCGTCTGCTCCTGATACCCAATATATG 501182 30 100.0 37 NNNNNNNNNN .............................. AGGAGGCTCTAGATGAGCTAATCAGCGCAGAAGGTGG 501249 30 100.0 35 NNNNNNNNNN .............................. ACCACCCCTGGGAAAGGCCTTATGGTACTACCTAA 501314 30 100.0 35 NNNNNNNNNN .............................. CTTAAAAATACTACCCTCAACAATCAATATTGCAA 501379 30 100.0 37 NNNNNNNNNN .............................. CTCTCTTACTTCTATAAGACTGAAACTTCACACCTAA 501446 30 100.0 38 NNNNNNNNNN .............................. TAACGCTTATTTCACCCTGCTTAACACTCTTAACCCCA 501514 30 100.0 37 NNNNNNNNNN .............................. ACATCCCTACATAATAATACGCCACTTGTCCAAAAAC 501581 30 100.0 36 NNNNNNNNNN .............................. ATCTCCATCATACCAATGCTGTGCAAAATCAATCTT 501647 30 100.0 40 NNNNNNNNNN .............................. TTGAAAAGGTTGGGTGATAGGGTTAAGGAGGAGTTAGTGA 501717 30 100.0 39 NNNNNNNNNN .............................. TAAACTTAAGCTGGGATGGGCTATATACAAAGACAGACA 501786 30 100.0 38 NNNNNNNNNN .............................. GAGATAGAGCTGGTTTTACGTTATGGCAAAATCTTAGA 501854 30 100.0 36 NNNNNNNNNN .............................. TGGTTCATACAATTCTGGAAGGTTGTAGAAACCAAC 501920 30 100.0 37 NNNNNNNNNN ...C.......................... GATGCCCAAACCTGAATATACCCCGCACTAACTAAGT 501987 30 100.0 1 NNNNNNNNNN ...C...........C..A........... NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 45 30 37 GTTACAATAAGACTAAAATAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.67%AT] # Reference repeat match suggestion: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [60.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [642,659] Score: 0/0.18 # # Final direction: F [5.68,0 Confidence: HIGH] >NC_018068 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1538047 32 100.0 35 NNNNNNNNNN ................................ TTTCCAAGCCAGATCCATGTGCCATGCTTTAAGGC 1538114 32 100.0 34 NNNNNNNNNN ................................ TAATAATGTACAGAAGTTTTCGGCTGAGATTTTA 1538180 32 100.0 35 NNNNNNNNNN ................................ TATTCCAAGAATCAAAAATGAATTTACCACCACAC 1538247 32 100.0 37 NNNNNNNNNN ................................ AAATGATCAATACACTATAACAGCAGACACCGACACA 1538316 32 100.0 34 NNNNNNNNNN ................................ TATAGCACAGGCCAGAGGATTCTCAAGAGGTTTT 1538382 32 100.0 36 NNNNNNNNNN ................................ AATAACGCCTTGTTCATTCCGATACTCATCAAACCA 1538450 32 100.0 35 NNNNNNNNNN ................................ AGATTTTAGATCGAACTCAATGTCATTGATGGACT 1538517 32 100.0 34 NNNNNNNNNN ................................ ATCTTACACCATTTATCTCTTCTTCGGCAAGAGG 1538583 32 100.0 36 NNNNNNNNNN ................................ GTGTTTCCAGATTACTTTTATTGCATCTTCGAATGC 1538651 32 100.0 35 NNNNNNNNNN ................................ ATAAGCATGAGAACACCAACATTCGAGTTGATTAA 1538718 32 100.0 35 NNNNNNNNNN ................................ ATAAGCATGAGAACACCAACATTCGAGTTGATTAA 1538785 32 100.0 34 NNNNNNNNNN ................................ TTTTTGATTCTAGACCAAATGAGCTCAAGGCTAT 1538851 32 100.0 33 NNNNNNNNNN ................................ TGGCTGCTGAAGGCCGTAGTTAGAAGTCGTTTT 1538916 32 100.0 36 NNNNNNNNNN ................................ CTAATTGGTGCGTCTGTACGAGTAATCACAGCGGCA 1538984 32 100.0 36 NNNNNNNNNN ................................ TCTCAGAACACTCTCCATGCGCTCTGATTGCTTGTT 1539052 32 100.0 34 NNNNNNNNNN ................................ ATCTTTTGCCGCCAATACGACCTATTTCCTAACT 1539118 32 100.0 33 NNNNNNNNNN ................................ TCAAGGAAAACGAACGACGGCAACAACTCCTGG 1539183 32 100.0 35 NNNNNNNNNN ................................ ATCACGCACAATCTACACGGAACCGTCCCAGGACA 1539250 32 100.0 33 NNNNNNNNNN ................................ TCAAGGAAAACGAACGACGGCAACAACTCCTGG 1539315 32 100.0 33 NNNNNNNNNN ................................ CTCACGCAGGGCAAGGTCTAAGTCGTGGGCAAA 1539380 32 100.0 35 NNNNNNNNNN ................................ CCATTACCCCGCCTGGAGGTATCGGCACACCGGTA 1539447 32 100.0 33 NNNNNNNNNN ................................ ATACTGCAAGCAACTTGCTCGATGCTCTATCTT 1539512 32 100.0 33 NNNNNNNNNN ................................ ATACTGCAAGCAACTTGCTCGATGCTCTATCTT 1539577 32 100.0 35 NNNNNNNNNN ................................ AAAGTAAAAATGAATCAAACGCCTCTCCTCCCTAC 1539644 32 100.0 35 NNNNNNNNNN ................................ AGTTGATTGCCCAAATTATGAACCATTTGATAAAC 1539711 32 100.0 33 NNNNNNNNNN ................................ ATAATGTTGATCAAATTAGTGAATATCAATATC 1539776 32 100.0 35 NNNNNNNNNN ................................ GACATGGAATCCTTCATCAAATCGCTCCTGGCAAC 1539843 32 100.0 34 NNNNNNNNNN ................................ TTATCCAAAACTTGCGGTGTTACAATCGCGCTGA 1539909 32 100.0 35 NNNNNNNNNN ................................ CTTTTCTTCCTCGATAAACCGTTTCATTTGCTGTG 1539976 32 100.0 36 NNNNNNNNNN ................................ AGAAACAATCTGGTCAAACGTTTTATACACCGACAC 1540044 32 100.0 35 NNNNNNNNNN ................................ AAATTTGGAGAGGAGGCAGGACTTGAACCTGCCAA 1540111 32 100.0 35 NNNNNNNNNN ................................ TTTAATGTCAACAGCCCCTTCGGATTTGTCGTTCT 1540178 32 100.0 36 NNNNNNNNNN ................................ CAGTTACCAAACAGCAACCGGCCTTTTTCCACTGAA 1540246 32 100.0 31 NNNNNNNNNN ..........................GA..TA CACCGAAAGGCATAGTTGCATTTGGTTTCAT 1540309 32 100.0 1 NNNNNNNNNN CGTCACT....T.................... NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 35 32 34 GTCGCTCCCTACGTGGGAGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [6,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [171,598] Score: 0.18/0.18 # # Final direction: F [5.55,0.55 Confidence: HIGH] >NC_018078 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1290372 36 100.0 38 TGTCCATAGA .................................... TTAAAACCGTGTTGCACTGCAACCCGGAATTCTTGCAC 1290446 36 100.0 41 ATTCTTGCAC .................................... CATAGAGGGTCGCCGGCTCTGGATCACGCTCCCCTAGTCGT 1290523 36 100.0 36 CCCTAGTCGT .................................... TTTTTGCCTCATGCTTGGGCGACAGCTTTTGACCAA 1290595 36 100.0 34 TTTTGACCAA .................................... TCGCAAGCGCCGTGCTTCCAGTGATCGCCTTCTA 1290665 36 100.0 39 TCGCCTTCTA .................................... AACACCTCAGTAGCACGTCATACGCCGACCAATCATCAG 1290740 36 100.0 35 CAATCATCAG .................................... TTTTCTGACCACTTGTGCGGGATTAGCGGGCTTAG 1290811 36 100.0 37 GCGGGCTTAG .................................... ACCAATGCGTCGTCATTTCCGGCTTCAATTTCAGCCT 1290884 36 100.0 38 ATTTCAGCCT .................................... CTGAGGAGAGCGAGTACTCGGGGCTGCCGTCTGCGCTG 1290958 36 100.0 37 GTCTGCGCTG .................................... GCGTGAAACCGCCCCCAGCCTCGCCGGGGCCGCCTAG 1291031 36 100.0 35 GGCCGCCTAG .................................... ACTCGGAATCCCATGTGCTGACAGCGGATTCGCAT 1291102 36 100.0 37 GGATTCGCAT .................................... CGGGCAGCGTTCGACACCCGCTCTAGTTGACTTCCGG 1291175 36 100.0 41 TGACTTCCGG .................................... CAGGTGAGCAACGGCGGCGGCAACCTGGCGGCCACGGGTCG 1291252 36 100.0 40 CCACGGGTCG .................................... ATGGGATATCTGCTGCCCGCCCGGGGAGATGCTGTCCGAG 1291328 36 100.0 36 GCTGTCCGAG .................................... TTCGTCGACCATCATTGCCATTCCCTCTCCCCACGT 1291400 36 100.0 41 CTCCCCACGT .................................... TTGCGCCAACCCTTTCGGTGTGATGCGGATGGTCGGCTCGG 1291477 36 100.0 29 GTCGGCTCGG .................................... CTTGAATAACGCGCAGTGAATTTCGCGGA 1291542 36 88.9 36 ATTTCGCGGA ----................................ ATTCGCACGAGTTCCCGTCAGCGTCGTAAATCGCCA 1291614 36 100.0 37 TAAATCGCCA .................................... CCGGCAACAATCGCGCCGGCCCGCGCGGATGACTCCG 1291687 36 100.0 36 GATGACTCCG .................................... CGCATGGACCCGGGCGAGCTGCAGATGGTCCGGGAG 1291759 36 100.0 36 GGTCCGGGAG .................................... TGGATTGCGCTAACTGGCTTGGCGCTGATCCTGGTG 1291831 36 100.0 41 GATCCTGGTG .................................... TCCACATCGATTTCCTTGACCTCGCCAGGAGAGAAGATCAC 1291908 36 97.2 AGAAGATCAC .........................A.......... TCGTCGACGA ========== ====== ====== ====== ========== ==================================== 22 36 37 GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [12,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.10,-6.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [55.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [50,74] Score: 0/0.18 # # Final direction: F [1.42,0 Confidence: HIGH] >NC_018078 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1293375 36 100.0 38 CACCCTGTCA .................................... CTTCAGCACCACCATCATCCGGCGCCTCAGCTCAGCAT 1293449 36 100.0 38 AGCTCAGCAT .................................... CCTTCGACGCCGGATTCGTGATCTCTTCCCGCGGATAG 1293523 36 100.0 36 CCGCGGATAG .................................... TGCCCCGGCGTTTAGCGATCACAACACCAACTAATG 1293595 36 100.0 36 CCAACTAATG .................................... CAGCGAAATACAGGCTCCACGACACGACCACAACGC 1293667 36 100.0 37 ACCACAACGC .................................... TCTTGACGATGCGGTTGCCCCGCGCCCTTTTCCAGCC 1293740 36 100.0 37 TTTTCCAGCC .................................... AGGTTCGCGTCAGACAGGTTCGCGTCGATCAAGTCCG 1293813 36 100.0 38 ATCAAGTCCG .................................... TTTATCACTCCCGACCAAATAGGTATCGGCGTGTTCAA 1293887 36 100.0 37 GCGTGTTCAA .................................... ATTTTGAGCGCGAACTCGTCCACAGTCCCCCTTTCAG 1293960 36 100.0 35 CCCCTTTCAG .................................... GCCCCGTGGATGGCGGATGCGTTGTGCGCGCAAGT 1294031 36 100.0 40 GCGCGCAAGT .................................... CCGACGATGGCCAGTAAATCGGCGTGGGTAACCGATCCGG 1294107 36 100.0 35 ACCGATCCGG .................................... CTGACGGCACGGAGCTTTCCGGCTTCTATCAGGTA 1294178 36 100.0 36 CTATCAGGTA .................................... CCTCATGGTGGGACATGGACGAGCGCGACTATCGGG 1294250 36 97.2 37 GACTATCGGG ......G............................. TGGACGCAGAATCGCACCGGGTGCGGGAGGTGCAGCA 1294323 36 100.0 40 AGGTGCAGCA .................................... GCATATCGCCCGCCACACCACAGCCACGCTACTGCTCCAT 1294399 36 97.2 40 ACTGCTCCAT ...C................................ ACACCGCCGATGACAGCTATGTCCGAGTGACATCCTCCCA 1294475 36 97.2 38 CATCCTCCCA ..................A................. TTGAACCGCCCTTCGCGCGGTGTTTCGGCCGTGCCCGA 1294549 36 100.0 CCGTGCCCGA .................................... TACGACGACT ========== ====== ====== ====== ========== ==================================== 17 36 37 GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [12,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.10,-6.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [33.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [99,150] Score: 0/0.18 # # Final direction: F [1.15,0.27 Confidence: MEDIUM] >NC_018092 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 865558 30 100.0 36 GAAGTCCAAA .............................. CGGAGGCTCTACCTAATCATCCTCTTGACACAACTC 865624 30 100.0 37 GACACAACTC .............................. AGTTGACTTCACTACTACTTCTTCATCTATAATTCTA 865691 30 100.0 37 TATAATTCTA .............................. GAAGAGAGGTTAGAATAACAGCTATTAGCGTTTCACA 865758 30 100.0 35 GCGTTTCACA .............................. TTTGGAGATAGAGTTGCAGTAGAAATGATAAGGAA 865823 30 100.0 37 TGATAAGGAA .............................. CACGGCCTACCTCGCTGAGATCCGGGTAGATGACAGC 865890 30 100.0 AGATGACAGC .............................. AGGAGAATAA ========== ====== ====== ====== ========== ============================== 6 30 36 CTTTCAATTCTTTTGTAGTCTTATTGGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [65.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [10,2623] Score: 0.18/0.18 # # Final direction: R [0.27,5.18 Confidence: HIGH] >NC_018092 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 59725 30 100.0 39 AAAGCCCCCT .............................. TGTTCATCGCACTTCTTCTTCTGACTCTGCTCCACTTAG 59794 30 100.0 37 CTCCACTTAG .............................. GCGTTAATGAACAATAAGCCTGACACGAACATAAACA 59861 30 100.0 37 AACATAAACA .............................. TTTCAATAAGGAGTTTCAAATGGCTCGATGGAATTAT 59928 30 100.0 42 ATGGAATTAT .............................. AGAACCTCCGCAATCTCCTTTGGAGAAAGGCCCTTCTTGAGA 60000 30 100.0 38 CTTCTTGAGA .............................. CTTCTTCGAAGTCGTAGTTTAGTGTGTCAAGATATTCT 60068 30 100.0 37 AAGATATTCT .............................. TTCTAGAAGTTCTCTTGCGAGAGCCAAGAGCGCGGCT 60135 30 100.0 37 GAGCGCGGCT .............................. GTGTACTTAAGAATTTCTTTCATAACTTTTCTGAAGA 60202 30 100.0 38 TTTCTGAAGA .............................. ACATAAGAGACGGAGAGCTTGTTATCTGGAAAGCAAAT 60270 30 100.0 43 GAAAGCAAAT .............................. AGTTATAACAAACCAGCATGACCCGCTCTCGGCTGAGTGGCAG 60343 30 100.0 37 TGAGTGGCAG .............................. CTACCATGGCCATCACCAATAATTAATTGTAAGTTAG 60410 30 100.0 36 TGTAAGTTAG .............................. ATTTGCTGACAAGCCATCGCAAAATTCTTCTGTTTT 60476 30 100.0 37 CTTCTGTTTT .............................. AACTCCACGACAGCATAAGGGACATTTACCATCGTAT 60543 30 100.0 38 ACCATCGTAT .............................. TTTTTGTGCTGAGCCAACCCACCACTTTGGTAAAACTA 60611 30 100.0 49 GGTAAAACTA .............................. GGGGCTGCGGGCCGGCTCACACCCCGAGCTCCCGGCTCGGGGTGCTCAT 60690 30 100.0 37 GGGTGCTCAT .............................. TGGGATAATAAAGCCTCTATACTTCTTTGAATAATAG 60757 30 100.0 37 TGAATAATAG .............................. TCCAACATGGTTAACTTCCATCCTCTTAAAAGGAACT 60824 30 100.0 37 AAAAGGAACT .............................. GTAAGGTATTCTTCATAGACACCGCTCTGCATAACGT 60891 30 100.0 37 TGCATAACGT .............................. TTGAGGCTGGAGAGGGCTTCTTTGTTACTACTTGCGT 60958 30 100.0 37 CTACTTGCGT .............................. TTAACTCGTTTAGTTTTATGTTCATGTTCCACACTAA 61025 30 100.0 39 TCCACACTAA .............................. CTAATTTACGCTTTAGCTCGTGATCAACCCTAATCCCTA 61094 30 100.0 CTAATCCCTA .............................. ACACTCATGTT ========== ====== ====== ====== ========== ============================== 21 30 38 GTTCCAATAAGACTACAAAAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [476,285] Score: 0/0.18 # # Final direction: F [5,0 Confidence: HIGH] >NC_018092 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 866047 30 100.0 37 CCGCAAAAAG .............................. CTTATAAGATTTTCCCATTTAAGCAGAGCTTAGATAA 866114 30 100.0 45 GCTTAGATAA .............................. CTGACTTTAGAGACTTATACAATAACAACAACATATCTAAAGTCC 866189 30 100.0 37 TCTAAAGTCC .............................. GCTACAACCCTCCCCTCGTAGTAGTACTTCCCATCGT 866256 30 100.0 38 TTCCCATCGT .............................. CCTTATATGGGTGTTGTGAAGCAGGATAGAACTCTTGA 866324 30 100.0 37 GAACTCTTGA .............................. GTCCCCGTAGTCCCTTAGAACTTTGTAGCCCTTCTTC 866391 30 100.0 40 GCCCTTCTTC .............................. CTTCCAGCATTCTCTGCCTTCACGTAAACTTCTGTACCCT 866461 30 100.0 37 TCTGTACCCT .............................. GCCAATTAAGTTCCTCCAGACAGATGAAGCCAGCAAA 866528 30 100.0 37 AGCCAGCAAA .............................. CGAGGAAGGCTCCCTCTAAACCAGCCAAGGAGGTTAA 866595 30 100.0 39 AGGAGGTTAA .............................. TGGCCACCCACTCCAATGCGCCTTTCACTTTTTGGCCAA 866664 30 100.0 34 TTTTGGCCAA .............................. TATCAAAAGGTTAAGGCTTCTGTAAAAGAACTTA 866728 30 100.0 38 AAAGAACTTA .............................. CCCGAGCGAGAGCTCGGGGTGATCATCATTGGAAACTC 866796 30 100.0 37 TTGGAAACTC .............................. TAAGTGATTGGCTAAATCCTCATAGAATCCCAACTCC 866863 30 100.0 37 TCCCAACTCC .............................. TGTAAATGTTTGTAATATGTGTATGCAATCATTGTTG 866930 30 100.0 34 ATCATTGTTG .............................. TATCAAAAGGTTAAGGCTTCTGTAAAAGAACTTA 866994 30 100.0 36 AAAGAACTTA .............................. TTCTATAGCTCCCCTGTCAACCCAAATTACTGCGAT 867060 30 100.0 37 TTACTGCGAT .............................. TTGGGTAAGATGGAGGGTAGAAGATACAGAAGATTAG 867127 30 100.0 39 AGAAGATTAG .............................. TTCCCCCAACCTCCGATTTGTTTTTGAGGTTTTTGAGTC 867196 30 100.0 37 TTTTTGAGTC .............................. AGAAGTAACAAGGAGGTGGGAGATGGAAGAAATGAAA 867263 30 100.0 39 AGAAATGAAA .............................. CTTGAACTTAAGCCACTCTATTGCGTATGGGTAGAGCTC 867332 30 100.0 49 GGTAGAGCTC .............................. TCTCCACTTGCTCCAGTGGAAACACACCTTTACGTTTGCCAAGTTCCAG 867411 30 100.0 49 CAAGTTCCAG .............................. TGTAGGAATATCTATAAGATTAAATGTCAGAGCTTCAGCGATCGAAGTT 867490 30 100.0 37 GATCGAAGTT .............................. AGTGGCAGAGAACAGAAATTTTGTCAAAAACGGAAAA 867557 30 100.0 40 AAACGGAAAA .............................. TTGCCAGTGGATATCATTAAGGTTCTGAGGGAGGCAGTCA 867627 30 100.0 37 GAGGCAGTCA .............................. GAGTTCGTAGGATAATAACAAGGAACGAAAAGTTTAA 867694 30 100.0 38 AAAAGTTTAA .............................. AAGGCGTGGGAAGAACAATATCGGGAATTAAGATAGTT 867762 30 100.0 37 TAAGATAGTT .............................. TTGCACTCACGTGTAACAAGTACCTGTACAATAGATA 867829 30 100.0 37 ACAATAGATA .............................. CAATATTTTTTCAATGTCTGTCATTGTCCCACCTCCT 867896 30 100.0 37 CCCACCTCCT .............................. TGTTTTCACTAATCGAAGACTTCGTAAGAGATAACGA 867963 30 100.0 37 GAGATAACGA .............................. CTGAAGTGCTCTCAGCCGCAAGGACCGCATACTACAA 868030 30 100.0 CATACTACAA .............................. AGGGGGCTTTT ========== ====== ====== ====== ========== ============================== 30 30 38 CTTTCAATTCTTTTGTAGTCTTATTGGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [41.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [499,483] Score: 0/0.18 # # Final direction: R [0,5.27 Confidence: HIGH] >NC_018089 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1419393 28 100.0 33 GTTGTCACTG ............................ ATTGAGAGACGCTATAGAATTTCTAGAAACTCA 1419454 28 100.0 33 TAGAAACTCA ............................ CAGTAGCAACGGCTATGGAAGTAAAATCAACAT 1419515 28 100.0 33 AAATCAACAT ............................ CCACAAATCAGCTTTAACTTTAACGACCTTTCA 1419576 28 100.0 33 CGACCTTTCA ............................ CAGAAATAAATAATTTAAAATATAAATTATCCA 1419637 28 100.0 33 AAATTATCCA ............................ GATAAGGTCTATAATTCTATCCACTAACGACCA 1419698 28 96.4 33 CTAACGACCA .A.......................... TAAAAGAGGCGAGATTATTCAACAAAAAAACCA 1419759 28 100.0 33 AAAAAAACCA ............................ AAAATCAGATGATGAACTTGAGGACGCGCGTCG 1419820 28 100.0 33 ACGCGCGTCG ............................ GGCTATTTAGGCCTTGCAACTGACAAATCAGTA 1419881 28 100.0 33 CAAATCAGTA ............................ TTAGAGATGTTGAAGTTGATGGCATTAAGTCTA 1419942 28 100.0 33 ATTAAGTCTA ............................ TTAGAAAGTTTGGAAATGACACAGTCAATATCA 1420003 28 100.0 GTCAATATCA ............................ TTGTATATCG ========== ====== ====== ====== ========== ============================ 11 28 33 GGATCACCCCCGCTCGTGCGGGTAAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-9.70,-9.70] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [299,635] Score: 0.18/0.18 # # Final direction: F [0.64,0.18 Confidence: MEDIUM] >NC_018089 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1316457 36 100.0 30 NNNNNNNNNN A....A.T.AATCAGT..CT....TG.......... TCAAATGTAGTAGTTACTTTCTTTTCACAT 1316523 36 100.0 30 NNNNNNNNNN .................................... CCAAACTATTTAGACAGAGTAGCTCGTGAC 1316589 36 100.0 30 NNNNNNNNNN .................................... TAGCGCCCATAGCTACACTAGAACCTGCTT 1316655 36 100.0 30 NNNNNNNNNN .................................... ATATCAATTAATTCTTGTGTAGTCTTTTTA 1316721 36 100.0 30 NNNNNNNNNN .................................... TGCGCTGTCAGTATACACATATTAGCTATA 1316787 36 100.0 30 NNNNNNNNNN .................................... GTAAAACAAGTGATAAGCGTTAGCAGAAAT 1316853 36 100.0 30 NNNNNNNNNN .................................... AATATCGAAAATCTCAATCAGAAAATGCCT 1316919 36 100.0 30 NNNNNNNNNN .................................... AGATGGACTAACTATCGCAAAAGGCGACGG 1316985 36 100.0 30 NNNNNNNNNN .................................... GTATCCTCTAGATAAGCATTAGAGCCAGAG 1317051 36 100.0 30 NNNNNNNNNN .................................... ACCTTAAAAGTAAGTTCCATCATAATCACT 1317117 36 100.0 30 NNNNNNNNNN .................................... ATAGGTTCTGGCAAATCAATAATATATTTT 1317183 36 100.0 30 NNNNNNNNNN .................................... TCATTCTCATGACCTGCTTACCATCAAAAG 1317249 36 100.0 30 NNNNNNNNNN .................................... TCTCAGCTCTTCTTGCCGTACACGCGCCTC 1317315 36 100.0 30 NNNNNNNNNN .................................... TTAGGTCTGTATTTTGTTCCTGCCTTGATA 1317381 36 100.0 30 NNNNNNNNNN .................................... TCATTATGTAGCCATTCAAGCGCCGTCCAT 1317447 36 100.0 31 NNNNNNNNNN .................................... AGTCTCTATTGGCGAGCGTGCAGCTTGATTG 1317514 36 100.0 30 NNNNNNNNNN .................................... ATCGTCCTGACCTGTCGTATTTAGGGCGTA 1317580 36 100.0 30 NNNNNNNNNN .................................... AAAAGCTATTAGCTAGCTGTTGCACTCAAC 1317646 36 100.0 30 NNNNNNNNNN .................................... AACAGCACAAAAACGAAATCTTTGATAAAA 1317712 36 100.0 30 NNNNNNNNNN .................................... AAATCAATACGTCCGTCACGATTGCTATTA 1317778 36 100.0 30 NNNNNNNNNN .................................... ACCGCGAGGGGCGTTGAATTGGTTTTCGTT 1317844 36 100.0 29 NNNNNNNNNN .................................... GGTACTGTTGCAGTTTATACAGGCGGACC 1317909 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 23 36 30 GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-5.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [84,156] Score: 0/0.18 # # Final direction: R [0.27,0.78 Confidence: MEDIUM] >NC_018106 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 4903745 29 100.0 32 NNNNNNNNNN GATAA..AGGAT.GC.............. GTGTATTGAACTGTTGCCACGTTTCCTCCGGG 4903806 29 100.0 32 NNNNNNNNNN ............................. CATTCAGACATCAACCAAGCGTTTCGTGAGTC 4903867 29 100.0 32 NNNNNNNNNN ...............A............. GATGATTGCGCTCGGATCACTTGTTACCATTG 4903928 29 100.0 32 NNNNNNNNNN ................A............ GCAGCCTGAACAGCAAGGGTGCGCTCTGAAGA 4903989 29 100.0 32 NNNNNNNNNN ...C......................... GTTTTTGGGGGTGAAAAAAGAAATAGAGTGTG 4904050 29 100.0 32 NNNNNNNNNN ............................. GGCTGGATGCCGACATCGTGACATATAGCGGG 4904111 29 100.0 32 NNNNNNNNNN ............................. GCGCCTTCTCCAGCGCCTCTACCAGCTCAGCA 4904172 29 100.0 32 NNNNNNNNNN ............................. CTCTCGTATGCTGACTCGTTGGCCTGGGTGGC 4904233 29 100.0 32 NNNNNNNNNN ............................. GTATCGGCTAACTTAAGCACTGTGTCTATTCC 4904294 29 100.0 32 NNNNNNNNNN ............................. AAGTAGTCCGAAGAGGAGAACTGGCCATCCAC 4904355 29 100.0 32 NNNNNNNNNN ............................. CGTTTTGATCAGGCCGCCGAATTCGACGGACG 4904416 29 100.0 32 NNNNNNNNNN ............................. GACCTTGTCGCCCATCGCTTCGCCGAGGTCGG 4904477 29 100.0 32 NNNNNNNNNN ............................. CAGGCCGGTCGCCAGCCGACACTGTGGGTGCG 4904538 29 100.0 32 NNNNNNNNNN ............................. AGTTTGCGTAAGGCTGCCACCTTGTCGCAATG 4904599 29 100.0 32 NNNNNNNNNN ............................. GAATCCTCGGTCTTGCACACCGGGGATTTTTT 4904660 29 100.0 32 NNNNNNNNNN ............................. CTGAGAGGTTGACTTATAGATGACCTCGGTTC 4904721 29 100.0 32 NNNNNNNNNN ............................. CATATAAGCAGCAAGCCAGTCTCTAACTTTAC 4904782 29 100.0 32 NNNNNNNNNN ............................. ATATCGGCCATTTGGTCGCCTGATACACCAGC 4904843 29 100.0 32 NNNNNNNNNN ............................. AGAGCGCCTGAGCATGAGCCAAACGTATAATC 4904904 29 100.0 32 NNNNNNNNNN ............................. GAGATAGTTATTTACATCAACGTTAATATAAC 4904965 29 100.0 32 NNNNNNNNNN ............................. AACTGTGTGCCTGGCTCTTCCGTTCCGCGTTG 4905026 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 22 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [61.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [110,96] Score: 0/0.18 # # Final direction: R [0,1.92 Confidence: HIGH] >NC_018089 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =========================== ====== 1420126 27 100.0 34 AAAACCAAGG ........................... CATTAAAGCCTGAAGCAGTAGATGAGATTGACAG 1420187 27 100.0 34 AGATTGACAG ........................... TAAAAGAGGCGAGATTATTCAACAAAAAAACCAG 1420248 27 100.0 34 AAAAAACCAG ........................... CTACAATCAAAACAATGTCAGTTGCTGTAGTTAG 1420309 27 100.0 34 CTGTAGTTAG ........................... TAATATGTCCGCAAGCTTTGACGAAGCTAAGAAG 1420370 27 100.0 34 AGCTAAGAAG ........................... TGTTCTGCGTGACAGCGAGGACATACAGTGTAGG 1420431 27 100.0 34 ACAGTGTAGG ........................... CAATCTGATGTAGTGACTAAGACTATACATGTAG 1420492 27 100.0 34 ATACATGTAG ........................... TTTCCAAGCATTGACGGGGCTAGGTGGTGGCAGA 1420553 27 100.0 34 TGGTGGCAGA ........................... TTCTAATCGTTTATCACTGATTTGCTTAATCAGA 1420614 27 100.0 CTTAATCAGA ........................... ACTAAAAGAT ========== ====== ====== ====== ========== =========================== 9 27 34 GATCACCCCCGCTCGTGCGGGTAAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-9.70,-9.70] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [46.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1032,25] Score: 0.18/0.18 # # Final direction: F [0.55,0.27 Confidence: MEDIUM] >NC_018092 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 426204 31 100.0 37 TTGAAAGCTT ............................... AGGTGGTTAGACGGGTGGTTTGCTGGAGACTTAGGAC 426272 31 100.0 37 GACTTAGGAC ............................... GCAGTCCAGTACAAAGGCACAATTCTCGGTGGAATAC 426340 31 100.0 37 GGTGGAATAC ............................... CTCCTTACAATAAGCTCACCGTTGCTGATGTTGTCGG 426408 31 96.8 ATGTTGTCGG C.............................. TTGTAAGGAG ========== ====== ====== ====== ========== =============================== 4 31 37 TCTTTCAATTCTATTTTGGTCTTATTGTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:74.19%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [121,2342] Score: 0.18/0.18 # # Final direction: R [0.68,4.68 Confidence: HIGH] >NC_018092 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 893671 29 93.1 41 CCTATGTTCT -........................A... CTACGGTTAAAAACCCTGCAGATTCTCCCAGCATAGTCCCC 893741 29 96.6 37 CATAGTCCCC .........................T... CCAGTAGAGTTCACGACGAGTGGGTGCAGTATTCTCG 893807 29 96.6 38 AGTATTCTCG .........................T... TTAAGGTTGAGACGGAGAAGGCGTTTCTTGTATCTTTA 893874 29 96.6 38 TGTATCTTTA .........................T... CCCGAAGACGTTCTCAAAGATTTAAAAAGAGATTTGCG 893941 29 100.0 37 GAGATTTGCG ............................. GTAACAAAGGTGGGCGTTTCTAGAGAGGTTGGGCAAG 894007 29 100.0 39 GTTGGGCAAG ............................. GGGCTACGAGGACGCCCTGAGGATTATGAAAGAGGTCCT 894075 29 100.0 38 AAGAGGTCCT ............................. CGGAAGCTCATAGAGTTCAATGGAAGGTTGAAGCTCAT 894142 29 100.0 39 TGAAGCTCAT ............................. GTTTGGGCGTATGGTGCCTTAGTGCACGAGTTCCACCGT 894210 29 100.0 38 GTTCCACCGT ............................. TTTTCACGTAGTTTATCACGTCGTCTGCATTTCTTCCT 894277 29 100.0 38 ATTTCTTCCT ............................. TCAAAGACTGTGTGTGGAGCAGCTATTTGCTTCGGCAT 894344 29 100.0 GCTTCGGCAT ............................. AGTGGGCTTT ========== ====== ====== ====== ========== ============================= 11 29 38 CTTCAATTCTTTTGTAGTCTTATTGGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.97%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [203,479] Score: 0.18/0.18 # # Final direction: R [0.27,0.59 Confidence: MEDIUM] >NC_018101 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 106697 36 100.0 38 CGAGGGTTTT .................................... GTCAGGGACGGGGGCGCGGAAAGGAGCGAGGCCACATA 106771 36 100.0 37 AGGCCACATA .................................... TTTCGATATTGATGATTTTGACAACATCGAGTTTCGA 106844 36 100.0 39 CGAGTTTCGA .................................... CTAATGATCCTTGTGACCGCATCGCGCTAAGGGCTTTCT 106919 36 100.0 39 AGGGCTTTCT .................................... TCCACCCTATGCTCGTAGTCGCCTAAGGTTCGTTCCCAT 106994 36 100.0 36 TCGTTCCCAT .................................... GAAGCGTTAAAACAGCTGGCAAAAGTTGCCGAGAAA 107066 36 100.0 37 TGCCGAGAAA .................................... TCGCTGATGACCGCATCGACTGGTCACTTACGGCCGT 107139 36 100.0 35 TTACGGCCGT .................................... TCGGTAAGGGGTCGTGGGTCGGTGGGGATACCCCC 107210 36 100.0 37 GGATACCCCC .................................... CCTCGCTAATATTGCGTAGTCGCGCAAGCTCAACACC 107283 36 100.0 GCTCAACACC .................................... AGCCCCCTCA ========== ====== ====== ====== ========== ==================================== 9 36 37 ACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [11,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.10,-8.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [46.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [305,195] Score: 0/0.18 # # Final direction: R [0.37,0.64 Confidence: LOW] >NC_018101 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 26461 29 100.0 32 GCCCCAGCAC ............................. GGTTGCCGTCTGGAGTTCAGTATTTTGAGCTC 26522 29 100.0 32 TTTTGAGCTC ............................. TGAAAGAAAACGCAGCTGAGGGATTTTCCAAG 26583 29 100.0 32 ATTTTCCAAG ............................. ATGCCACCAGTTCCAATTCGTGAGCGCAGGAT 26644 29 100.0 32 AGCGCAGGAT ............................. TCACTGCGCATCACTCCCTCACCAAATAAATC 26705 29 100.0 CAAATAAATC ............................. CTAGCGCGGC ========== ====== ====== ====== ========== ============================= 5 29 32 GGAACTACCTCCGCGTACGCGGAGAAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [9,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-10.30,-10.50] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [51.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [16,141] Score: 0.18/0.18 # # Final direction: F [0.64,0.18 Confidence: MEDIUM] >NC_018101 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 27380 28 100.0 33 CCTCGCATGG ............................ CGTGTGGTGGATTCCAGCCATCGCTCGCAAATG 27441 28 100.0 33 CTCGCAAATG ............................ GGTTCCGAAGTGCTCGATAGCTAGGGCGCGCAG 27502 28 100.0 34 GGGCGCGCAG ............................ TATTTTTAGAGAAGGGGCAGTAAAATAAAGAATG 27564 28 100.0 33 ATAAAGAATG ............................ TGCCTCTAACGAGGTGGGGGTCAATTGTATGCG 27625 28 100.0 33 ATTGTATGCG ............................ CTGGTGAGGGTTTCTTTTTTCCTCTTGCTTATG 27686 28 100.0 33 CTTGCTTATG ............................ GAACCGGGGCCAAGTCCACTACCCGGTGGTGGG 27747 28 100.0 33 CGGTGGTGGG ............................ CGCCCCGAAGGTTGAGTATCACGATCGGTTTAT 27808 28 100.0 33 ATCGGTTTAT ............................ GAAACTGCGTCTTTTAAGGAGCATTGGCATCAG 27869 28 100.0 33 TTGGCATCAG ............................ CGTGTCTCCGGATCGAGGGAAGAACTTCTGCGG 27930 28 100.0 33 ACTTCTGCGG ............................ TGTGGGCCTGGTGCGCCCCAAGTCAGAATCTGG 27991 28 100.0 33 CAGAATCTGG ............................ ATTTCGCTTCAAAAGACTCAGGATTTAACCGCG 28052 28 100.0 33 TTTAACCGCG ............................ AATTGGGTTAGCCATTCGGTGAAGTTCATGCCG 28113 28 100.0 34 GTTCATGCCG ............................ CTTGGGGACGCTCAGGCAACGGCGGCCAAGCTGG 28175 28 100.0 33 GCCAAGCTGG ............................ AGCCCGCCACCAAGAAGAAAATTCAGCAGCGGG 28236 28 100.0 33 CAGCAGCGGG ............................ GCGTTCAGGTTTCCGCCGGCCTCAGCCAGCTTG 28297 28 100.0 AGCCAGCTTG ............................ ACTAAATAAC ========== ====== ====== ====== ========== ============================ 16 28 33 GAACTACCTCCGCGTACGCGGAGAAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [9,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-10.30,-10.50] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [43.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [338,20] Score: 0.18/0.18 # # Final direction: F [0.55,0.27 Confidence: MEDIUM] >NC_018101 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2038334 29 100.0 32 NNNNNNNNNN ............................. AAGCTCCGGGCGCTGCTCAAAATCAATATTTG 2038395 29 100.0 32 NNNNNNNNNN ............................. GTAATTAACGAAACCGCATCGGGCGGGCGCGG 2038456 29 100.0 32 NNNNNNNNNN ............................. CACCGCCGGGCAGCACTCCCTCAAAGCACAAG 2038517 29 100.0 32 NNNNNNNNNN ............................. GGATCGGGCGCGGGCTGCGATTTCGAGCGCGG 2038578 29 100.0 32 NNNNNNNNNN ............................. TGCTTGCGGATCCTTCGAGGTCACGCTCTCGT 2038639 29 100.0 32 NNNNNNNNNN ............................. CCGCTAGCTTTGGTCGCCGCGCGGCGGCGGTC 2038700 29 100.0 32 NNNNNNNNNN ............................. CCCTGGAAAAGGAGAAAAAGTTGAATAAGGGC 2038761 29 100.0 32 NNNNNNNNNN ............................. CATCATTGGGGAATCCCCCCGAGCATGGGTGA 2038822 29 100.0 32 NNNNNNNNNN ............................. CATCCGGCGTTAGTGACCGCTGCGGTCGCAGC 2038883 29 100.0 32 NNNNNNNNNN ............................. CAAGCCCGATCGGGATCCTTCAAAAGCACATC 2038944 29 100.0 32 NNNNNNNNNN ............................. CATCGTGGTAACAGACTTTTTCACCTCAAGCG 2039005 29 100.0 32 NNNNNNNNNN ............................. TTCTTTCCCTGCCAGCAAGCAGCTGTATTCGA 2039066 29 100.0 32 NNNNNNNNNN ............................. TTTTGTCCTCCACTACCCGGATGGTGACGTGG 2039127 29 100.0 33 NNNNNNNNNN ............................. ACCAACGTCCGTTTCGATGAATTCTTCCAACGA 2039189 29 100.0 32 NNNNNNNNNN ............................. GCCTTAGCGAAGCTGCCCGCCTCCAAGGGTAT 2039250 29 100.0 32 NNNNNNNNNN ............................. AAGTTTTCCCTGCTCTGAATCAAGCCGCTTGG 2039311 29 100.0 32 NNNNNNNNNN ............................. GCAAATCTTCAAGAACATCTTTGTCCAAGGTC 2039372 29 100.0 32 NNNNNNNNNN ............................T GAGCTGGGTTTTGTGGCGTCTCTTTCTCGTCG 2039433 29 100.0 32 NNNNNNNNNN ............................. TCCGCATCGTCGTAGTCACCCCTGAGGTAGTC 2039494 29 100.0 32 NNNNNNNNNN ............................. GGGCTCGGCTTCGGTTTTTCGCATTCCTGCGA 2039555 29 100.0 32 NNNNNNNNNN ............................. GTATCCTCCGTGGTCTTTGGTTTTGTCTTTTT 2039616 29 100.0 32 NNNNNNNNNN ............................. CGGAACGGCATGGGTCTACCGGTTTATAGGGG 2039677 29 100.0 32 NNNNNNNNNN ............................. GGGTGCTGGTTTAACTGGCCTTGATATTGCGA 2039738 29 100.0 32 NNNNNNNNNN ............................. GGGGGAAACACACGCCAGGTGCAGTTACTTGC 2039799 29 100.0 32 NNNNNNNNNN ............................. GCTTTTCTTCGAAATCATGCGGCAATTCTGAA 2039860 29 100.0 32 NNNNNNNNNN ............................. CGGTCAAAGAACGGTTTAGCTTCCCAGGCTGG 2039921 29 100.0 32 NNNNNNNNNN ............................. TGGCAAGGAATCCTCAACCAATTCGACGAAAT 2039982 29 100.0 32 NNNNNNNNNN ............................. TAAGGCCACGTCTGAATGGGTGAGCAATGAAT 2040043 29 100.0 32 NNNNNNNNNN ............................A CGTGCTTTATCGCCGCCACGCTCGCCGTGTGG 2040104 29 100.0 32 NNNNNNNNNN ............................. GCAGAAGAATTTGGAAGAAGCCCGTGAGGTTA 2040165 29 100.0 32 NNNNNNNNNN ............................. GGCGAAAAGGTAGCGGAGGAGTCCATGTCAAC 2040226 29 100.0 32 NNNNNNNNNN ............................. GGGGGATCAAAAAAATCCCCCACACCCGCCGC 2040287 29 100.0 32 NNNNNNNNNN ............................. GGCTAACCCTGCGGCGTTTGTTGTTGCTCGTT 2040348 29 100.0 32 NNNNNNNNNN ............................. GCACCATCAGGGAGATGGAAGACACCAGACTC 2040409 29 100.0 32 NNNNNNNNNN ............................. AAGGAAGAACAGGCGGAACTTGCAAATACCCT 2040470 29 100.0 33 NNNNNNNNNN ............................. AGCCACCCAAGAAAGAAGCAGCGCCCGTCCAGG 2040532 29 100.0 32 NNNNNNNNNN ............................. CCCCGGGGCTATCACCCCGTCGATGGGGAAGC 2040593 29 100.0 32 NNNNNNNNNN ............................. ACCCGGTGCGTGGGCAAAACCCCGCCCCGTCG 2040654 29 100.0 32 NNNNNNNNNN ............................. CTACAAACTTTTCTGCAAACGCCACCTCCTCA 2040715 29 100.0 32 NNNNNNNNNN ............................. ATCATTGCCCAGCTCACGAGCACGCTCGGCGG 2040776 29 100.0 1 NNNNNNNNNN ....................AAGTAAG.. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 41 29 32 CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-10.50,-10.30] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [309,157] Score: 0/0.18 # # Final direction: F [0.41,0.37 Confidence: LOW] >NC_018108 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 225724 32 100.0 36 NNNNNNNNNN ..............T..A...A.....A.... ACTTTTGAAGTTTACTTCCGAATAAGTAGTTTAGAA 225792 32 100.0 34 NNNNNNNNNN ................................ TCAGTAAGTGCCATTCAACCCGTCCTTCCAGTTA 225858 32 100.0 33 NNNNNNNNNN ................................ CTGGTTCGGTGGTGACCGTATAGTTTCGGCAGA 225923 32 100.0 34 NNNNNNNNNN ................................ CCAATTAGTGCTTTTTCTATTCGATGTTTTTTAC 225989 32 100.0 34 NNNNNNNNNN ................................ GAATTTGGGGTTACACAAGCGATGATTGAGAAAA 226055 32 100.0 34 NNNNNNNNNN ................................ TCAGTAAGTGCCATTCAACCCGTCCTTCCAGTTA 226121 32 100.0 33 NNNNNNNNNN ................................ CTGGTTCGGTGGTGACCGTATAGTTTCGGCAGA 226186 32 100.0 34 NNNNNNNNNN ................................ CCAATTAGTGCTTTTTCTATTCGATGTTTTTTAC 226252 32 100.0 34 NNNNNNNNNN ................................ GAATTTGGGGTTACACAAGCGATGATTGAGAAAA 226318 32 100.0 34 NNNNNNNNNN ................................ AATGAAGTATATTGTTGGACGAGATTACACAATC 226384 32 100.0 35 NNNNNNNNNN ................................ TTGCATAAAAAATGAAGTGGCATTAATTGCCATAG 226451 32 100.0 34 NNNNNNNNNN ................................ CGACCTTTAAGCAATCGTAAAGTTGGTGACGTTC 226517 32 100.0 35 NNNNNNNNNN ................................ TCTGTTAATTTGCAAGCGTATCCAGTCGAAACTTC 226584 32 100.0 35 NNNNNNNNNN ................................ TCTGTTAATTTGCAAGCGTATCCAGTCGAAACTTC 226651 32 100.0 35 NNNNNNNNNN ................................ CTTGATTCATTTTTTTTGTCCTTTTACTTAATTAA 226718 32 100.0 35 NNNNNNNNNN ................................ CCAAGTTTTACGGTGTACCCATTCGATTATTTGCG 226785 32 100.0 34 NNNNNNNNNN ................................ TTATGGACCGTCGCACTAAGGTCTACTTGGACAT 226851 32 100.0 34 NNNNNNNNNN ................................ TCGAGCCATACTTGATAAGCTGTTTTCCAGCGGG 226917 32 100.0 34 NNNNNNNNNN ................................ TTGTAAGCTGAAATAGCTCTGTTAATGAATCTTG 226983 32 100.0 34 NNNNNNNNNN ................................ ACCTTGCGATTGGTGTCTTAGTTAGACTCTCGTC 227049 32 100.0 36 NNNNNNNNNN ................................ CTTGATTCATCTGCAAATCCTCTAATGGACTCTGTT 227117 32 100.0 35 NNNNNNNNNN ................................ CGAACCAATCAGCAACCGTGCTCATATTGTCACGT 227184 32 100.0 35 NNNNNNNNNN ................................ ATCAAGCAGGTGCTAGCATTTCCGCGACATTAGCC 227251 32 100.0 34 NNNNNNNNNN ................................ ATATTATTTTCAACTAACAAGTTTTTAATCTCAG 227317 32 100.0 34 NNNNNNNNNN ................................ AGGGTTCCCTTGATGCTGTAGTTTCGAACGTTCC 227383 32 100.0 35 NNNNNNNNNN ................................ ATCAAGCAGGTGCTAGCATTTCCGCGACATTAGCC 227450 32 100.0 34 NNNNNNNNNN ................................ ATATTATTTTCAACTAACAAGTTTTTAATCTCAG 227516 32 100.0 35 NNNNNNNNNN ................................ ATGTCATAAAAGTTAAGGCGTGTGAATTACTTGCA 227583 32 100.0 34 NNNNNNNNNN ................................ ATAGATGACCGTGAAATCGATTGATGAGCTCATC 227649 32 100.0 34 NNNNNNNNNN ................................ GAGAATTAATCAGACAGCCCGAATCTATTCAAGC 227715 32 100.0 35 NNNNNNNNNN ................................ GAGTTAACAATTAAAATAGTCTCGCAAAATGTATA 227782 32 100.0 34 NNNNNNNNNN ................................ ACCGAAATGGTTGAAGTTAAGGTGGATAGATAAT 227848 32 100.0 1 NNNNNNNNNN ................................ NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 33 32 34 GTTTAAACACACAGCCACGCGTACGTGGCTGA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [9,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [527,175] Score: 0.18/0.18 # # Final direction: R [0.55,0.78 Confidence: LOW] >NC_018142 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2959075 36 80.6 40 ACCTGATGGC --.......G......A..CA....G.......... GAGGAAAAATGTTTCTTGGAAAGAAACAAAACGGCGTCCC 2959151 36 97.2 37 ACGGCGTCCC ....................A............... TTGATCCCAATCTGCTGCCGCGTTTGAGACACGAATT 2959224 36 88.9 38 GACACGAATT .........G..........A..T.G.......... GCCTTGTTGCGTACCCAGAACCATTTTGAGCGAGATTT 2959298 36 88.9 37 AGCGAGATTT .........G..........A..T.G.......... CCACGACGGTCACGTCACGGTGGCCGTGCGGCGCTCC 2959371 36 91.7 35 GCGGCGCTCC .........G..........A....G.......... CTCACTGATGCCCAGGTTGAGATGCTCTGGTTGTT 2959442 36 94.4 39 TCTGGTTGTT ....................A....G.......... GAACTCGATCGTCGGGCACGACGTGATGTCGCTCAATGA 2959517 36 91.7 36 CGCTCAATGA ................A...A....G.......... TTCCGGCAGCATTGAGGTCAAATATCTGCACGAGAT 2959589 36 94.4 36 TGCACGAGAT ....................A....G.......... ATGATGCGATTCAGCCGGGGCCGGTACGCCTCCGAG 2959661 36 94.4 38 CGCCTCCGAG ....................A....G.......... CTTTGCGCTGGTTCAACGATGCTATCGCGGGGGCGTGG 2959735 36 94.4 37 GGGGGCGTGG ....................A....G.......... ACGCCAATGGAGGGGTTAGACGCTGGACCTTGAACTG 2959808 36 94.4 36 CCTTGAACTG ....................A....G.......... TGTCAGTTTTACCCCCCCTAAAACTCCTGGTAAAAA 2959880 36 91.7 41 CTGGTAAAAA .....G..............A....G.......... CTGTGGAAAAATCTGAGAGAGAATCGCGCCTACCGCCTGAG 2959957 36 94.4 38 ACCGCCTGAG ....................A....G.......... GAGACTTCCGCACCGACGACGCTTGATGAGACCCTCCC 2960031 36 100.0 39 AGACCCTCCC .................................... CCCGCGTGTCGCCCAATGGCTCGGGCTCCGAGACGACAA 2960106 36 100.0 37 GAGACGACAA .................................... TGAGTCTGACCAGGATATGACTTGTCTCACCGGGCTT 2960179 36 100.0 39 CACCGGGCTT .................................... CCCGCGTGTCGCCCAATGGCTCGGGCTCCGAGACGACAA 2960254 36 100.0 37 GAGACGACAA .................................... TGAGTCTGACCAGGATATGACTTGTCTCACCGGGCTT 2960327 36 100.0 37 CACCGGGCTT .................................... GATCAAGATCGTGCCGAAGATCGAAGGCAAGATCCCC 2960400 36 97.2 38 CAAGATCCCC .........................G.......... CGGCCAGTACCTGACGGTACGGCTCCCCGACAACGTGA 2960474 36 97.2 37 GACAACGTGA .........................G.......... ATACGCGGCCTCCTGGCTGATCGACTCGGGGATGCGA 2960547 36 100.0 40 GGGGATGCGA .................................... GGGGAGGTTTCGACTCGGGGGATCGTGCCGGGCTGCTCGG 2960623 36 97.2 39 GGCTGCTCGG ..............T..................... GCCAGCTGTTGCGGGTGCCCACCACAGTGCACCACAAGC 2960698 36 100.0 36 CACCACAAGC .................................... GCGGCGACTTCTCGAGAACGCAACAGTTTCTGGCGA 2960770 36 100.0 36 TTTCTGGCGA .................................... TCGGGGCTGCTGCGGATCTAGTCATGCTAGACAAAG 2960842 36 100.0 37 CTAGACAAAG .................................... ACCCAGCAGTACGCAGATCTTTGACTCGCGTTATCAA 2960915 36 97.2 37 GCGTTATCAA ....................A............... GCCTCCATCCGGTAGAGACCGTCCCGACGGGTCGCTG 2960988 36 100.0 37 CGGGTCGCTG .................................... TCGGCGAGGGAATCGCGAAATGGCCCATCCAAGCCAT 2961061 36 100.0 38 TCCAAGCCAT .................................... CGGTATGGCTTTGGGCTACAAACCCCGGGGATCCCATT 2961135 36 100.0 35 GGATCCCATT .................................... GGAGACATGAAACCTCCCATGAGTTATGCCGGCGG 2961206 36 100.0 37 ATGCCGGCGG .................................... TTATCTGAGGCGTTACAAAAATGAGTTGCGCACGATA 2961279 36 100.0 38 GCGCACGATA .................................... GGCCGCTGTCGGAAAGGTGAATCGTGGCAAACAACGAT 2961353 36 100.0 36 AAACAACGAT .................................... CAAGATCGAGGACATCTACGTCGGCCTCATCGAGGC 2961425 36 100.0 35 TCATCGAGGC .................................... GCCTCAAAATCGCCCTGAAGCTTTTCAGCAACATT 2961496 36 97.2 39 CAGCAACATT .......C............................ CCGGTCCAGGCCGAGCCCGAGGGCACGGGCGACAGCGAT 2961571 36 100.0 36 CGACAGCGAT .................................... GCCGAAGTGAGCATCCCGCCCGAGCTGCTTGGGTTC 2961643 36 100.0 35 GCTTGGGTTC .................................... TACCTTCCACCACGATGTTTTTCGCTCCGAGGAAC 2961714 36 100.0 37 TCCGAGGAAC .................................... TGGGCGAACCGTCGGAGTGGCCCGGCCCGATTTGGGT 2961787 36 97.2 38 CGATTTGGGT ...........C........................ AATACAAGGAACAGCAGAAAGAGATTCGTAAGGCTCTT 2961861 36 100.0 39 TAAGGCTCTT .................................... ACCCCCGACGTTGCCAACCTGCTCGGCATCCACCGCACC 2961936 36 100.0 37 CCACCGCACC .................................... ATGGAGGCCCCCTGCTCGAAAGAGGGGCGGATGTGCA 2962009 36 100.0 35 CGGATGTGCA .................................... GCCCTCGATGTACTGCTGGTCCGTCGCGGAATAGT 2962080 36 100.0 37 GCGGAATAGT .................................... GGCCTGTTACTCTGTCCTGCTACCCGGACAAGCAGGG 2962153 36 100.0 37 ACAAGCAGGG .................................... ATCTGATCAGGAGATATTAAATGCAGAAAGCAACCAA 2962226 36 100.0 36 AAGCAACCAA .................................... GTTGAATTTGTCATGGGAAGTGAAGGACCACCACAC 2962298 36 100.0 37 ACCACCACAC .................................... CCTGTTGATTGGGGCCAAGGCCATAGCTTTGATGCTT 2962371 36 100.0 38 TTTGATGCTT .................................... ATCTTGCTGTTGCCTGCCGCGTCAATGCCGGGCGGGTC 2962445 36 100.0 39 CGGGCGGGTC .................................... CACGCCGAACTCATCCCAGGGCCGCGACCAGCCGACCGG 2962520 36 100.0 35 AGCCGACCGG .................................... GCTGGTGCCGCGACCTCGAGGCAACCGCCCTCGAT 2962591 36 100.0 37 CGCCCTCGAT .................................... AAGCGTTGGTTCTACGGCTCATCAAAACAGCCGCGGG 2962664 36 100.0 36 CAGCCGCGGG .................................... ACGTTGTCCGGGTAGCCCTGTACACACCTGCACCCG 2962736 36 100.0 36 CCTGCACCCG .................................... TATCGCGCCCATGCCCCTGTAGCGCCCCAGCCCGCA 2962808 36 100.0 37 CCAGCCCGCA .................................... GGATTGGTGAGGAATTCTGTTGGATTCCCGTACATGT 2962881 36 100.0 36 CCGTACATGT .................................... GGAGAGGGCCTGCCATATCTGGCCGGGTAGGTTCCG 2962953 36 100.0 40 GTAGGTTCCG .................................... CGGCCACAACCCGCAACTCCGTGCCGTACCCGGCTTGCGT 2963029 36 100.0 39 CGGCTTGCGT .................................... CTGTCGGTTCCTCGGCCGGCCTACCGCAGGCCCCGAGAA 2963104 36 100.0 37 GCCCCGAGAA .................................... GGCCACCGAGCTTGGCGTAAGGAAAGTGTTCATGAAA 2963177 36 100.0 37 GTTCATGAAA .................................... CAATGGATAGGGAGAAACCCTGTGTGGTCTCATATTC 2963250 36 100.0 37 TCTCATATTC .................................... GGACCCGGAATTGGTCACCGAGGCCTACAAGAAGATC 2963323 36 100.0 37 CAAGAAGATC .................................... ACTAGAAGGACAGGTAACAATGGCAGACAACTATGCT 2963396 36 100.0 37 CAACTATGCT .................................... CTCTTGCTGATATGCCACAGCCTAACTCGAGAAACAG 2963469 36 100.0 39 CGAGAAACAG .................................... GGGGCGGACCGATCAGGCATACGCTGCCGGTGTGACCGC 2963544 36 100.0 36 GTGTGACCGC .................................... CTATGACAATGTGATCGGCACTCTGGACATGCAGAT 2963616 36 100.0 36 ACATGCAGAT .................................... GTGACAGTATGAAGTCCCCGTCAAAGGCCAGGTTGT 2963688 36 100.0 37 GCCAGGTTGT .................................... AAGAATACACTGATCCCAGCTTGTGGGCGTTTTCCGC 2963761 36 100.0 42 CGTTTTCCGC .................................... GGTACTGGGATGAGCACCCCTATGGGGACGGATCCGTCCCTC 2963839 36 100.0 40 TCCGTCCCTC .................................... TTGGGGCGGGCTCACTTCATTGGCCCTAGAAGGCCGTCTT 2963915 36 100.0 37 AGGCCGTCTT .................................... CCAGCTGAAGCGGAAGGACGGTGCCGGCGCCACCAGC 2963988 36 100.0 38 CGCCACCAGC .................................... CCGCCGAGTGTGTCGCGGGCCCCGGCGGGGGCTTCACG 2964062 36 100.0 38 GGGCTTCACG .................................... ACTGGTACTGGTGGGTATGTGAAAGGGCGAGACTACAT 2964136 36 100.0 37 GAGACTACAT .................................... GGATCACTTCGTCACCGTCATGGATGCTCTGAAGAAT 2964209 36 100.0 39 TCTGAAGAAT .................................... GATCGGCTCCGACTCCCTGGCAGCGTTCAAACGCTTCAC 2964284 36 100.0 40 AACGCTTCAC .................................... CCCAGACTTCCTGACAAACGAAGGAACAGTCACACTACTG 2964360 36 100.0 40 CACACTACTG .................................... TAGGTCGGGTCCGGGTGCCCCAGGCCCGCGACCAGGCTGT 2964436 36 100.0 36 ACCAGGCTGT .................................... GAGGGGGTGACCAGGGATTGTTTCAGGGAGTACGTG 2964508 36 100.0 38 GGAGTACGTG .................................... TTCCAACAGGCCATGATGGGCATTGACGCGTCCCAGCA 2964582 36 100.0 36 CGTCCCAGCA .................................... GGTAGGGGCGGTGACGTCGGGCACCTGGATCTTCGT 2964654 36 100.0 37 GGATCTTCGT .................................... AGCGCGAGACTTACCCGACCTGGATCTACAAGAAGCA 2964727 36 100.0 36 ACAAGAAGCA .................................... CTGGCTGAATGATGGCTACAACCACTTCCTGCTGGA 2964799 36 100.0 36 TCCTGCTGGA .................................... TCGGTGCCCGTTGGCGGGAACTCGAAACCGCAGCTG 2964871 36 100.0 36 ACCGCAGCTG .................................... AGTTAAAGAAAAGTCAAACAAGAAGCGCGAGTTCCT 2964943 36 100.0 37 GCGAGTTCCT .................................... AGAAAAAGACATTGCCCCGCTGATCGAAAGTCTTGTT 2965016 36 100.0 37 AAGTCTTGTT .................................... CTGTGCCGGCCATTGTGGCAATGGTCAACGCCATGAA 2965089 36 100.0 36 ACGCCATGAA .................................... CTCAACATCCCGAACGCTCAGGCCATTCTTGTGGAT 2965161 36 100.0 38 TCTTGTGGAT .................................... ATAACTATGGTGGTGTCTCGCTCTCCTGATGTCTTCAA 2965235 36 100.0 38 ATGTCTTCAA .................................... TCCGGGGTGGCACATACGGCAGAAGTGGCGCTGGTTTG 2965309 36 100.0 34 CGCTGGTTTG .................................... ACACCCAACCGTCACGCAACAGGCGCGACAGTAT 2965379 36 100.0 39 GCGACAGTAT .................................... TCGCGAATGCGGTGCTGTTCACGAGCGACAATGTTACGG 2965454 36 100.0 38 AATGTTACGG .................................... ATGAATCTGAAGTGTTTTGCAGACGTGCGCGAAAAGAT 2965528 36 100.0 36 GCGAAAAGAT .................................... CTGCATTTTCTCCCGGGTTTCCGTGAGAATCTCCAA 2965600 36 100.0 35 GAATCTCCAA .................................... CGAGTCATCAATGGTATAGAGAATCATATCCTCCA 2965671 36 100.0 37 ATATCCTCCA .................................... GTGATAAACAGATGCATCTTGTCACGCTTTGAATGCT 2965744 36 100.0 39 TTTGAATGCT .................................... GTCCATCAGGCCATTCAGTGCCTGGATGTGGGGTATGTC 2965819 36 100.0 37 GGGGTATGTC .................................... GGATAGTTACCATGACTTGGACATGCAGAGACTGCAA 2965892 36 100.0 37 GAGACTGCAA .................................... CTGGCAGCGGGCACCTCCGCAGCGGCCTCAAAGATGT 2965965 36 100.0 37 TCAAAGATGT .................................... CTGTCGTTGATGCGGATGCCGGCAAGGTGAAGTGGCC 2966038 36 100.0 36 TGAAGTGGCC .................................... ACGACAGAGGGGGCGACTCCCGAACCAGAGAATCAG 2966110 36 100.0 38 AGAGAATCAG .................................... CTGCCGGGTCTGCACCCGTATCGGGTGCGGAAGCTGCT 2966184 36 100.0 GGAAGCTGCT .................................... GGCTCGCCTCA ========== ====== ====== ====== ========== ==================================== 98 36 37 GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [11,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.40,-11.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [22-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [397,172] Score: 0.18/0.18 # # Final direction: R [0.55,0.78 Confidence: LOW] >NC_018142 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 651452 36 97.2 37 CCGCTTATTT ...................................C CCTTCCAACCCGGCGCCGTCCTCGAGGCCGCCCACCT 651525 36 97.2 37 CCGCCCACCT ...............................G.... ATTGACGCGATTCGGTACGGTCAATCGGGGTAGCGTG 651598 36 100.0 36 GGGTAGCGTG .................................... TGATTTCGCATCGCGTTGAGTGAGGGCCTCCAGCAG 651670 36 100.0 37 CCTCCAGCAG .................................... GTCCGACCATTCAATCCGTATCCACCGCCTAGAAACC 651743 36 100.0 36 CCTAGAAACC .................................... CATCATCGGGGAACTCGACCTGGTCAAAGTCGACGG 651815 36 100.0 33 AAGTCGACGG .................................... TACTCGGCTACCCCCGAGCGCCGAAAGGCCCGC 651884 36 100.0 37 AAAGGCCCGC .................................... TTGAGCTGTTGCGGGAATGGACTCGTGGCTGTTACGC 651957 36 100.0 35 GCTGTTACGC .................................... GCCTACTCCCGCCCCCTGCGGTACCTGCTCAACTA 652028 36 100.0 35 TGCTCAACTA .................................... AAGGCGGGGGCCGCGAGGGAGCGGTGGTCGAGCCC 652099 36 100.0 39 GGTCGAGCCC .................................... AGGTAATGACAATGTGGAAACAGGCCTGAACTGGATTCT 652174 36 97.2 37 ACTGGATTCT ..........G......................... CACATCGCCTGTCCAAACTTCCGCCGGAAGGGGCTCC 652247 36 100.0 39 AAGGGGCTCC .................................... GGCGGGCCATCACCGCACTCCAAGAAAGGAACACCGCAT 652322 36 100.0 36 AACACCGCAT .................................... CCGACGGGTCGCTGGAAGGTAGGGCGGGTCGAGGTA 652394 36 97.2 37 GGTCGAGGTA ................G................... GGAAGGAAATGGGCACCACCCTGCCCGGGCAGCTCGA 652467 36 100.0 36 GGCAGCTCGA .................................... GGTGTTGTCGGTCGGCAACTGGTACTTGCCGACGAT 652539 36 100.0 39 TGCCGACGAT .................................... GCAGCACCATGGTTCACCGCCGGGCGGAGGGGCCCACTG 652614 36 100.0 38 GGGCCCACTG .................................... GTTCCTCGGTGCTGCCATGACTCTCATCATCCTTCCCA 652688 36 100.0 35 ATCCTTCCCA .................................... GTGGAGGCTGAAACGATGAAGGAGGTGGGTCTGAA 652759 36 100.0 37 TGGGTCTGAA .................................... CCACGCCCCATTGTATCTCACCCCAAGGAGTCCCCAT 652832 36 100.0 36 GAGTCCCCAT .................................... GGCGCACGTCAGGATCTCGCCGGGAACCAGTAGCAG 652904 36 100.0 36 CCAGTAGCAG .................................... CTCCGGCCTGTGGTCCCGCTGGGCCAGCGTGGACTT 652976 36 100.0 GCGTGGACTT .................................... GCTCGCGATT ========== ====== ====== ====== ========== ==================================== 22 36 36 GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [10,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-13.00,-12.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [611,29] Score: 0.18/0.18 # # Final direction: F [0.92,0.41 Confidence: MEDIUM] >NC_018143 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3119195 36 100.0 38 AGTCGTCGTA .................................... TCGGGCACGGCCGAAACACCGCGCGAAGGGCGGTTCAA 3119269 36 97.2 40 GGCGGTTCAA .................T.................. TGGGAGGATGTCACTCGGACATAGCTGTCATCGGCGGTGT 3119345 36 97.2 40 TCGGCGGTGT ................................G... ATGGAGCAGTAGCGTGGCTGTGGTGTGGCGGGCGATATGC 3119421 36 100.0 37 GGCGATATGC .................................... TGCTGCACCTCCCGCACCCGGTGCGATTCTGCGTCCA 3119494 36 97.2 36 TCTGCGTCCA .............................C...... CCCGATAGTCGCGCTCGTCCATGTCCCACCATGAGG 3119566 36 100.0 35 CACCATGAGG .................................... TACCTGATAGAAGCCGGAAAGCTCCGTGCCGTCAG 3119637 36 100.0 38 GTGCCGTCAG .................................... AGGGCACTGGACCTGTATGAGGCACAGATGGCGTACTA 3119711 36 100.0 40 TGGCGTACTA .................................... CCGGATCGGTTACCCACGCCGATTTACTGGCCATCGTCGG 3119787 36 100.0 35 CCATCGTCGG .................................... ACTTGCGCGCACAACGCATCCGCCATCCACGGGGC 3119858 36 100.0 37 TCCACGGGGC .................................... CTGAAAGGGGGACTGTGGACGAGTTCGCGCTCAAAAT 3119931 36 100.0 38 CGCTCAAAAT .................................... TTGAACACGCCGATACCTATTTGGTCGGGAGTGATAAA 3120005 36 100.0 37 GAGTGATAAA .................................... CGGACTTGATCGACGCGAACCTGTCTGACGCGAACCT 3120078 36 100.0 37 ACGCGAACCT .................................... GGCTGGAAAAGGGCGCGGGGCAACCGCATCGTCAAGA 3120151 36 100.0 36 ATCGTCAAGA .................................... GCGTTGTGGTCGTGTCGTGGAGCCTGTATTTCGCTG 3120223 36 100.0 36 TATTTCGCTG .................................... CATTAGTTGGTGTTGTGATCGCTAAACGCCGGGGCA 3120295 36 100.0 38 CGCCGGGGCA .................................... CTATCCGCGGGAAGAGATCACGAATCCGGCGTCGAAGG 3120369 36 100.0 38 GCGTCGAAGG .................................... ATGCTGAGCTGAGGCGCCGGATGATGGTGGTGCTGAAG 3120443 36 100.0 GGTGCTGAAG .................................... TGACAGGGTGCGGTGGTCGCTGATCGGCTCCCCGA ========== ====== ====== ====== ========== ==================================== 18 36 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [38.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [150,99] Score: 0/0.18 # # Final direction: R [0.27,1.15 Confidence: MEDIUM] >NC_018145 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1235874 29 100.0 32 AATCTCTTCT ............................. CTGATCGGCAATATTCGACGGATCAACAGGCT 1235935 29 96.6 31 TCAACAGGCT G............................ CGCCATAGAATTGCAGAATTTGTCGGACACA 1235995 29 100.0 GTCGGACACA ............................. TGAATACTGTCAAAGCTAACGGATTGAAATC ========== ====== ====== ====== ========== ============================= 3 29 31 AGTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [9,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-9.00,-8.90] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [437,659] Score: 0/0.18 # # Final direction: F [1.55,0 Confidence: HIGH] >NC_018143 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3121872 36 100.0 40 NNNNNNNNNN CA.G...GGG.GGT..A................... TCGCGGCGAGCACGTCTCACCCAGCAGGCGGTGAGGTTGG 3121948 36 100.0 39 NNNNNNNNNN .................................... ACGGACGAGCTGGACCGCATCAGCGATGCTGAGCTGAGG 3122023 36 100.0 37 NNNNNNNNNN .................................... TTGTCTCAATCGTGCCGTCTGCGGTGACACGCTCCAA 3122096 36 100.0 36 NNNNNNNNNN .................................... CACCAGGATCAGCGCCAAGCCAGTTAGCGCAATCCA 3122168 36 100.0 36 NNNNNNNNNN .................................... CTCCCGGACCATCTGCAGCTCGCCCGGGTCCATGCG 3122240 36 100.0 37 NNNNNNNNNN .................................... CGGAGTCATCCGCGCGGGCCGGCGCGATTGTTGCCGG 3122313 36 100.0 36 NNNNNNNNNN .................................... TGGCGATTTACGACGCTGACGGGAACTCGTGCGAAT 3122385 36 100.0 25 NNNNNNNNNN ................................TCCG CGAAATTCACTGCGCGTTATTCAAG 3122446 36 100.0 41 NNNNNNNNNN .................................... CCGAGCCGACCATCCGCATCACACCGAAAGGGTTGGCGCAA 3122523 36 100.0 36 NNNNNNNNNN .................................... ACGTGGGGAGAGGGAATGGCAATGATGGTCGACGAA 3122595 36 100.0 40 NNNNNNNNNN .................................... CTCGGACAGCATCTCCCCGGGCGGGCAGCAGATATCCCAT 3122671 36 100.0 41 NNNNNNNNNN .................................... CGACCCGTGGCCGCCAGGTTGCCGCCGCCGTTGCTCACCTG 3122748 36 100.0 37 NNNNNNNNNN .................................... CCGGAAGTCAACTAGAGCGGGTGTCGAACGCTGCCCG 3122821 36 100.0 35 NNNNNNNNNN .................................... ATGCGAATCCGCTGTCAGCACATGGGATTCCGAGT 3122892 36 100.0 37 NNNNNNNNNN .................................... CTAGGCGGCCCCGGCGAGGCTGGGGGCGGTTTCACGC 3122965 36 100.0 38 NNNNNNNNNN .................................... CAGCGCAGACGGCAGCCCCGAGTACTCGCTCTCCTCAG 3123039 36 100.0 37 NNNNNNNNNN .................................... AGGCTGAAATTGAAGCCGGAAATGACGACGCATTGGT 3123112 36 100.0 35 NNNNNNNNNN .................................... CTAAGCCCGCTAATCCCGCACAAGTGGTCAGAAAA 3123183 36 100.0 39 NNNNNNNNNN .................................... CTGATGATTGGTCGGCGTATGACGTGCTACTGAGGTGTT 3123258 36 100.0 34 NNNNNNNNNN .................................... TAGAAGGCGATCACTGGAAGCACGGCGCTTGCGA 3123328 36 100.0 36 NNNNNNNNNN .................................... TTGGTCAAAAGCTGTCGCCCAAGCATGAGGCAAAAA 3123400 36 100.0 41 NNNNNNNNNN .................................... ACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTATG 3123477 36 100.0 38 NNNNNNNNNN .................................... GTGCAAGAATTCCGGGTTGCAGTGCAACACGGTTTTAA 3123551 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 24 36 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [36,50] Score: 0/0.18 # # Final direction: R [0,1.42 Confidence: HIGH] >NC_018143 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3121948 36 100.0 39 GTGAGGTTGG .................................... ACGGACGAGCTGGACCGCATCAGCGATGCTGAGCTGAGG 3122023 36 100.0 37 TGAGCTGAGG .................................... TTGTCTCAATCGTGCCGTCTGCGGTGACACGCTCCAA 3122096 36 100.0 36 CACGCTCCAA .................................... CACCAGGATCAGCGCCAAGCCAGTTAGCGCAATCCA 3122168 36 100.0 36 GCGCAATCCA .................................... CTCCCGGACCATCTGCAGCTCGCCCGGGTCCATGCG 3122240 36 100.0 37 GGTCCATGCG .................................... CGGAGTCATCCGCGCGGGCCGGCGCGATTGTTGCCGG 3122313 36 100.0 36 TTGTTGCCGG .................................... TGGCGATTTACGACGCTGACGGGAACTCGTGCGAAT 3122385 36 88.9 29 TCGTGCGAAT ................................---- TCCGCGAAATTCACTGCGCGTTATTCAAG 3122450 36 100.0 41 GTTATTCAAG .................................... CCGAGCCGACCATCCGCATCACACCGAAAGGGTTGGCGCAA 3122527 36 100.0 36 GTTGGCGCAA .................................... ACGTGGGGAGAGGGAATGGCAATGATGGTCGACGAA 3122599 36 100.0 40 GGTCGACGAA .................................... CTCGGACAGCATCTCCCCGGGCGGGCAGCAGATATCCCAT 3122675 36 100.0 41 GATATCCCAT .................................... CGACCCGTGGCCGCCAGGTTGCCGCCGCCGTTGCTCACCTG 3122752 36 100.0 37 TGCTCACCTG .................................... CCGGAAGTCAACTAGAGCGGGTGTCGAACGCTGCCCG 3122825 36 100.0 35 ACGCTGCCCG .................................... ATGCGAATCCGCTGTCAGCACATGGGATTCCGAGT 3122896 36 100.0 37 GATTCCGAGT .................................... CTAGGCGGCCCCGGCGAGGCTGGGGGCGGTTTCACGC 3122969 36 100.0 38 GGTTTCACGC .................................... CAGCGCAGACGGCAGCCCCGAGTACTCGCTCTCCTCAG 3123043 36 100.0 37 CTCTCCTCAG .................................... AGGCTGAAATTGAAGCCGGAAATGACGACGCATTGGT 3123116 36 100.0 35 ACGCATTGGT .................................... CTAAGCCCGCTAATCCCGCACAAGTGGTCAGAAAA 3123187 36 100.0 39 GGTCAGAAAA .................................... CTGATGATTGGTCGGCGTATGACGTGCTACTGAGGTGTT 3123262 36 100.0 34 CTGAGGTGTT .................................... TAGAAGGCGATCACTGGAAGCACGGCGCTTGCGA 3123332 36 100.0 36 GCGCTTGCGA .................................... TTGGTCAAAAGCTGTCGCCCAAGCATGAGGCAAAAA 3123404 36 100.0 41 GAGGCAAAAA .................................... ACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTATG 3123481 36 100.0 38 ACCCTCTATG .................................... GTGCAAGAATTCCGGGTTGCAGTGCAACACGGTTTTAA 3123555 36 100.0 ACGGTTTTAA .................................... TCTATGGACA ========== ====== ====== ====== ========== ==================================== 23 36 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [35.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [112,46] Score: 0.18/0.18 # # Final direction: R [0.18,1.42 Confidence: HIGH] >NC_018145 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 125672 29 100.0 31 AGTTTGTCAG ............................. ACACGCTTGATCTTCTTCTGTGGCGCGATGC 125732 29 100.0 31 GGCGCGATGC ............................. AATCTGTTCAACACTATCAGCTTGCAATTTA 125792 29 100.0 TTGCAATTTA ............................. TAGAGGCAAT ========== ====== ====== ====== ========== ============================= 3 29 31 TTTTCTAAGCTGCCTGTGCGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [157,565] Score: 0.18/0.18 # # Final direction: R [0,1.19 Confidence: HIGH] >NC_018143 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3948543 36 100.0 54 NNNNNNNNNN TGC..........AA....T........G....... CACCGGCGGACAAGGCGGCGCCGGGGGTGCTGGCATCAGCTTCAGCAACGGCAG 3948633 36 100.0 48 NNNNNNNNNN ........................G...GTG..... CACCGGGGGCGACGGCGGCAACGCAGGCACCGGCGCCGGCGACCCCGG 3948717 36 100.0 36 NNNNNNNNNN ...A................................ CAGCGGCGGGGCCGGCGGTAGCGGCGGGGCCAACTT 3948789 36 100.0 36 NNNNNNNNNN .................................... CAAAGGCGGCCTAAACACCGACGGACTCAGCAGCGC 3948861 36 100.0 33 NNNNNNNNNN ..C.A............................... CAAAGGCGGCACCGGCGGGGCCGGCGACGACTC 3948930 36 100.0 54 NNNNNNNNNN .GC......G...........A.....GG....... CAACGCCGGCGCCGGCGGCCTAGCCAACACCGGCGGCACCGCAGGCAACGCGGG 3949020 36 100.0 42 NNNNNNNNNN ..T......TGA.......CAA.....T.A...... CCAAGGAGACAGCGGTTCCGGATTGGGCGGCCAGCCCGGCTT 3949098 36 100.0 36 NNNNNNNNNN TGC......GG.........AA.....GG....... TAGCAGCGGTGCCGGCGGCACCAACGGCTCCGGCGG 3949170 36 100.0 36 NNNNNNNNNN .GC......GG.......ACAA......G....G.. TGCTGGCATCAGCTTCAGCAACGGCAGCAACGGCGG 3949242 36 100.0 48 NNNNNNNNNN ..C............G...GTG...........G.. CGACGGCGGCAACGCAGGCACCGGCGCCGGCGACCCCGGCAAAGGCGG 3949326 36 100.0 36 NNNNNNNNNN ..C..........................G...... GGCCGGCGGTAGCGGCGGGGCCAACTTCAACGGCGG 3949398 36 100.0 72 NNNNNNNNNN ..C................................. CAAAGGCGGCATGGGCGGCATCGCTGGCGACGGCGGGCCCGGCGGTGACGGCGGCAACGCCGGGGTCGGAGG 3949506 36 100.0 54 NNNNNNNNNN A..A.........AA.....A........G...... GACCGGCGGCACAGGCGGGGCCGGCGGCAACGCCGGCGCCGGCGGCCTAGCCAA 3949596 36 100.0 87 NNNNNNNNNN ..C...........CA....A..CG....T...... TGACGGCGGCCAAGGCGGTAACGGCGGCCAAGGAGACAGCGGTTCCGGATTGGGCGGCCAGCCCGGCTTTGCCGGCGGCCCCGGCGG 3949719 36 100.0 69 NNNNNNNNNN ...A.....GG.........A..C............ CACCAACGGCTCCGGCGCCGGCGGGGCCGGCGGACAAGGCGGCGCCGGGGGTGCTGGCATCAGCTTCAG 3949824 36 100.0 57 NNNNNNNNNN .......A...A.....................G.. CGTGGGCGGCACCGGGGGCGACGGCGGCAACGCAGGCACCGGCGCCGGCGACCCCGG 3949917 36 100.0 36 NNNNNNNNNN ...A................................ CAGCGGCGGGGCCGGCGGTAGCGGCGGGGCCAACTT 3949989 36 100.0 27 NNNNNNNNNN .................................... CACCGGCGGCAAAGGCGGCATGGGCGG 3950052 36 100.0 27 NNNNNNNNNN ..T..CT...GA......GC.......TGA...... CAACGCCGGGGTCGGAGGAAAAGGCGG 3950115 36 100.0 45 NNNNNNNNNN ..C.AA.....A........G......G........ CACAGGCGGGCCCGGCGGCAGCGGCGGCGCGCCCACCGGCAGCGG 3950196 36 100.0 27 NNNNNNNNNN ..C........AA......G.......TGA...... CGATGGCGCCGACGGAGGGGCAGCCAC 3950259 36 100.0 1 NNNNNNNNNN .GG..T....GA.......GA...T..T.A...T.. NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 22 36 45 CAACGGCGGCACCGGCGGCACCGGCGGCACCGGCGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-9.10,-14.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [29-50] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [13.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2617,710] Score: 0.18/0.18 # # Final direction: F [0.96,0.64 Confidence: LOW] >NC_018145 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1756727 28 100.0 32 NNNNNNNNNN AG.AC..C..A...A............. GTAAAAGTCGGACAATACCTTCAGATCAATCA 1756787 28 100.0 32 NNNNNNNNNN ............................ CAAGCTATAGCAAAATTGGAAAAGACAAATGC 1756847 28 100.0 32 NNNNNNNNNN ............................ ATAAATATATCGGCATTCGCTGTCGGGCAGCT 1756907 28 100.0 33 NNNNNNNNNN ............................ TGCATCTTGATGTCGGAGCTGGTCTGATCGACT 1756968 28 100.0 33 NNNNNNNNNN ...................A........ GACCCGTTCTGCGGCACCATGCCGAGAAGCTGT 1757029 28 100.0 32 NNNNNNNNNN ............................ GTGAGTCACTCGGTAAGAACCATTTTTTATCA 1757089 28 100.0 32 NNNNNNNNNN ............................ GTAAATCAGCTGGAATTGTCGCTGACTGGATA 1757149 28 100.0 34 NNNNNNNNNN ............................ ATTACGCCGGTCTCCTGTCCAAAATTCGTAAGCC 1757211 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 9 28 32 TTTCTAAGCTGCCTGTGCGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [321,476] Score: 0/0.18 # # Final direction: R [0,1.15 Confidence: HIGH] >NC_018178 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2661872 30 100.0 36 NNNNNNNNNN .............................. CTGTTTCCGACGTTTGTTGTTCCGTCGTTTGTTGTT 2661938 30 100.0 37 NNNNNNNNNN .............................. TTCGCAAAAGCGGAATTAGTCTCTGTGATTGCAACTC 2662005 30 100.0 36 NNNNNNNNNN .............................. TATCTTTCTATGTATGCTTTCTCTCGTGCTCTATCC 2662071 30 100.0 37 NNNNNNNNNN .............................. ATGCTCAACACATGGTATATGTGTATATGCGAAAACA 2662138 30 100.0 35 NNNNNNNNNN .............................. TAATTTACAAGCCCGTAGTCAAGCCCGCAAAATTC 2662203 30 100.0 35 NNNNNNNNNN .............................. ACGAAATGAAAATTTACAACATAGAACTCGATTAC 2662268 30 100.0 36 NNNNNNNNNN .............................. AACAATTCCACCCAGCCCGACGGCTCTCGCCTTCTC 2662334 30 100.0 35 NNNNNNNNNN .............................. ATGGCAGCGAGTCGTTCGTCGTCGATTTCCTTAGC 2662399 30 100.0 36 NNNNNNNNNN .............................. AATCGACGATAAGCGAAATTGCGGAGGACTACGGCT 2662465 30 100.0 36 NNNNNNNNNN .............................. TATCTTTCTATGTATGCTTTCTCTCGTGCTCTATCC 2662531 30 100.0 37 NNNNNNNNNN .............................. ATGCTCAACACATGGTATATGTGTATATGCGAAAACA 2662598 30 100.0 38 NNNNNNNNNN .............................. ATATATGAGACATTGCGTCGGCGGATATTCTTCTCCGG 2662666 30 100.0 36 NNNNNNNNNN .............................. CTTAGTAAAACGTGGGAATATATCAGTGCGCTGGGA 2662732 30 100.0 34 NNNNNNNNNN .............................. AACACATGCTAATCATATTAGAAGAAACGCCCGG 2662796 30 100.0 36 NNNNNNNNNN .............................. GTACGGACAACCGCCAGAACATTATTATCTATTCGA 2662862 30 100.0 38 NNNNNNNNNN .............................. GCGCTACTTCTGCATGCGATTATCAGAATCGAGTCTGA 2662930 30 100.0 37 NNNNNNNNNN .............................. GAATACGATAATCCGTATGGAGACAAAGCGCTTTCGC 2662997 30 100.0 36 NNNNNNNNNN .............................. GCATTACGCCGTATTTGTCGAAGTCCAGTTTTTCGC 2663063 30 100.0 36 NNNNNNNNNN .............................. AGTTTTACGTAAACAAGAAGGTTGTACAGAGGATAT 2663129 30 100.0 36 NNNNNNNNNN .............................. GTCTTGTCTTTCGCTATTACTGCGCCTTCAAGTCGC 2663195 30 100.0 37 NNNNNNNNNN .............................. TTGTTATCTTGCGGACGCTATGTAAATCCTCTCTAAT 2663262 30 100.0 36 NNNNNNNNNN .............................. TCAATCCTGAATCGAATGGGCTGTAGTAATACTTTG 2663328 30 100.0 1 NNNNNNNNNN .............CCGAC.CTG.CG.GT.G NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 23 30 36 GTTTTAATCGCACTATTGTAGAATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:73.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [71.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [124,1289] Score: 0.18/0.18 # # Final direction: F [5.18,0.18 Confidence: HIGH] >NC_018178 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================================== ====== 1355593 46 100.0 30 CGTCGATTCT .............................................. CAGGATGTCGAGCTTCATCGCCTTTGCAAC 1355669 46 100.0 30 CCTTTGCAAC .............................................. TCCATTGCCGCACAACAACGGTGATGGCAT 1355745 46 100.0 30 GTGATGGCAT .............................................. AGAATTGGGCAGACGAGGTCTATAAATGGT 1355821 46 100.0 30 TATAAATGGT .............................................. ATAGAGACAGCGGAAACGACGGAAACGCCG 1355897 46 100.0 30 GGAAACGCCG .............................................. GACTCCCGCAGAGGCAAAGCGGAGCGCATC 1355973 46 100.0 29 GGAGCGCATC .............................................. GAGAGAAGGGGTGGGCGACTGTCAAGGCA 1356048 46 100.0 30 TGTCAAGGCA .............................................. CCCGCCCCAAACAGACCCCAACGGGACTTC 1356124 46 100.0 30 ACGGGACTTC .............................................. TAATTTCTTTTTCTACTGAATCTCCTATTA 1356200 46 100.0 30 TCTCCTATTA .............................................. TTAGCGAAATAAATGGCAGATTATCCTGAT 1356276 46 100.0 30 TTATCCTGAT .............................................. TATTCGACGCTGTTAATGATGGCTTGGTAG 1356352 46 100.0 29 GGCTTGGTAG .............................................. AGCTCTTCAATAGGATTTGCAAACGGTTT 1356427 46 100.0 30 CAAACGGTTT .............................................. TTTACCCCCATAAATGGAATGCAAACGTTA 1356503 46 100.0 GCAAACGTTA .............................................. GTACCCCGAA ========== ====== ====== ====== ========== ============================================== 13 46 29 GTTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:73.91%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.30,-2.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [2192,119] Score: 0.18/0.18 # # Final direction: R [0.18,0.37 Confidence: MEDIUM] >NC_018224 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2861125 30 100.0 35 ATCAGGCATG .............................. AACAGATGCACAGAACCGGGAAAGTGAGTGACACC 2861190 30 100.0 36 GAGTGACACC .............................. TGCTACTGTCACGCCGACTGACAAAGTTTTAAGTCC 2861256 30 100.0 36 TTTTAAGTCC .............................. GTGGTCCCAACAGTCGGCCACAGCTCCGAGGAACCC 2861322 30 100.0 35 CGAGGAACCC .............................. CAGACCGAGCGGGCCGGTCTCGAGACCGCACTCGA 2861387 30 100.0 34 CCGCACTCGA .............................. TCGAGTGAGTCACCGCAGCGATCGCATGATCCGT 2861451 30 100.0 35 CATGATCCGT .............................. GAAGTCGGATGGAGGGGAGAGTCGGCGTCGGTCTC 2861516 30 100.0 36 CGTCGGTCTC .............................. TCCGGCATGAACGCGAACCTCGGACCGCTACTCCGG 2861582 30 100.0 38 GCTACTCCGG .............................. GTCGTCATCCTCGTCGCTGTCGTCGGCCTTGGAGATGA 2861650 30 100.0 36 TTGGAGATGA .............................. GAGGGAAATCGAATCGGGATCGATCCCATCCGGGAG 2861716 30 100.0 38 CATCCGGGAG .............................. TTTTCCATCCGGCTGCGTGGCGTCGCGAGCGATTCGGC 2861784 30 100.0 37 GCGATTCGGC .............................. GACTGCCGCTTTGCGATTTGGCTGACGCGCTCGTCCG 2861851 30 100.0 36 CGCTCGTCCG .............................. TGAACCGTCCGCGTCACCCTCGCGCTCGAGCATGGC 2861917 30 100.0 CGAGCATGGC .............................. TCGGACGTGT ========== ====== ====== ====== ========== ============================== 13 30 36 GTTTCAGACGAACCCTTGTGGGGTCGAAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,7] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTTCAGACGAACCCTTGTGGGTTTGAAGC with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [-5.60,-5.60] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [50.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [210,55] Score: 0.18/0.18 # # Final direction: F [0.95,0.37 Confidence: MEDIUM] >NC_018178 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 929751 30 100.0 36 TTAGAAAAGC .............................. ATTGAAGATGATTCTTGCAGTCATACGGCACACATA 929817 30 100.0 35 GGCACACATA .............................. CCTACCCTGAAGACGTTCTTATTGAATACATAGAG 929882 30 100.0 37 ATACATAGAG .............................. TCGCTTTTTATCCGCTCCCTCCACATCCCTTGCAAAT 929949 30 100.0 36 CCTTGCAAAT .............................. TGCTCGACCCTAACGCCGCCGATTATCAAATATATC 930015 30 100.0 38 CAAATATATC .............................. ACGAATTAACAACGGTATTTTGGGTGCCATTAGAGGCA 930083 30 100.0 36 ATTAGAGGCA .............................. GACCACTTACGGATATTGCACTATACTCGAAGATTA 930149 30 100.0 37 TCGAAGATTA .............................. GGCAATCGCCGGTTGTGGTATGGAGATATAGAAGTTA 930216 30 100.0 38 ATAGAAGTTA .............................. TTCTTCTTTAACGGCCAGGAATCTGCAACTGAATTCGC 930284 30 100.0 37 CTGAATTCGC .............................. TCGTAACTTCTCTCTGCTTCTTCTACTTCGTCTCTCA 930351 30 100.0 37 TCGTCTCTCA .............................. ATTATTAACGAAACTACAAAAGAAAAACTATTAAAAT 930418 30 100.0 36 CTATTAAAAT .............................. ACGCCGCCGCCTTTTTTCTGAATCGAGTCGAGTATG 930484 30 100.0 37 GTCGAGTATG .............................. TTTTTAATGAAGATTGTTAATTCATTTATTAATTCCT 930551 30 100.0 36 ATTAATTCCT .............................. TCAAAAATTTTGCTCCGCTGGTTCCCGGAAATTATT 930617 30 100.0 38 GGAAATTATT .............................. GCTCGCATGGGACAATATGTACATGAGCCAGGCTACTC 930685 30 100.0 37 CAGGCTACTC .............................. TTTCTTCAACTAAAAATAAATCATTTTCAATACTATA 930752 30 100.0 CAATACTATA .............................. CCGCTAAATTT ========== ====== ====== ====== ========== ============================== 16 30 36 ATTTCAATTCTACAATAGTACGATTAAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:73.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.90,-1.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1159,151] Score: 0.18/0.18 # # Final direction: R [0.18,4.87 Confidence: HIGH] >NC_018221 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1772093 36 100.0 30 NNNNNNNNNN ..GA.A..TTGT..T.T.........G......... AAATTTTTTGAACTTAATGCAATTTCTTGA 1772159 36 100.0 30 NNNNNNNNNN .................................... AAAACTTTTGACGGCTCTTTAGTCAACCCA 1772225 36 100.0 30 NNNNNNNNNN .................................... GGAGAAATGTAGCTGCTGTTTTGACATTAG 1772291 36 100.0 30 NNNNNNNNNN ................G................... TGTTTCATCGTCCTTTCTATTTGGGAAGTG 1772357 36 100.0 30 NNNNNNNNNN .................................... TTTGATAATCCAGAATCAACATCTTCACCA 1772423 36 100.0 30 NNNNNNNNNN .................................... TTCTATTCTTGCCTTTGCCTTTAAATTAGC 1772489 36 100.0 30 NNNNNNNNNN .................................... TTAGGATTGCATCACGCTCTACTTCAACAT 1772555 36 100.0 30 NNNNNNNNNN .................................... GCAACTTTTGTTTTCTTTTCTTCTTTTGCT 1772621 36 100.0 30 NNNNNNNNNN .........A.......................... TACGAGCTCCCAACATACGTTGACGGTGCA 1772687 36 100.0 30 NNNNNNNNNN .................................... AGCTTCAGTAAATTGGTTACACAAACCTCA 1772753 36 100.0 30 NNNNNNNNNN .................................... AAGTACTCAGATCCAACAAGAAATCGATAA 1772819 36 100.0 30 NNNNNNNNNN .................................... TCTTTGACAATATCATAATCCATGTGCTGA 1772885 36 100.0 30 NNNNNNNNNN .................................... TCCGTTGTCTAATTCGATTAATTTCATCAT 1772951 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 14 36 30 GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [408,159] Score: 0.18/0.18 # # Final direction: R [0.18,0.41 Confidence: MEDIUM] >NC_018221 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 498298 36 100.0 30 NNNNNNNNNN .................................... GCACACACACGCTACTCACAGGCATTATAG 498364 36 100.0 30 NNNNNNNNNN .................................... GTTTTCATTTAAGTAGTGCGCTTGATATGC 498430 36 100.0 30 NNNNNNNNNN .................................... GTGCAACAAAAGAATATTGTTGTCAATGGT 498496 36 100.0 30 NNNNNNNNNN .................................... ATCAGTTGTCGGGAAATTGCCGGAGCGTGG 498562 36 100.0 30 NNNNNNNNNN .................................... TTCAAGAAAGCTATGGAAGTTCTGAAGCAA 498628 36 100.0 30 NNNNNNNNNN .................................... TGGGGCTAAAGGTGTAGCACATCAAGTTTC 498694 36 100.0 29 NNNNNNNNNN .................................... TAAAACAAGACGAAATGAGGAAATTAACA 498759 36 100.0 30 NNNNNNNNNN .................................... TCATAGCAGACCAACCTGCTCCATCGCTTG 498825 36 100.0 30 NNNNNNNNNN .................................... CAATGTAAATGCTCATTATGATTTACATAT 498891 36 100.0 1 NNNNNNNNNN ......................TT.TCGCAG.T.CG NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 10 36 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [63.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [94,521] Score: 0.18/0.18 # # Final direction: R [0.41,0.45 Confidence: LOW] >NC_018224 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2862117 29 100.0 37 GGCGATGAAA ............................. CCATCCAGCGGTCGACTTTGTCGTGCATCCGGGCGAT 2862183 29 100.0 36 TCCGGGCGAT ............................. CCTCCGACTCCGCCGCCTCGATAGAAGCACGCACTT 2862248 29 100.0 37 GCACGCACTT ............................. GATGAATATGGGGACTCGAGAGACTCACCCTGATCGC 2862314 29 96.6 36 CCCTGATCGC ..........G.................. GGCCGACGAGTTCGAGGCGTTCGTCGACGCCGGCGA 2862379 29 96.6 ACGCCGGCGA ..........G.................. CGGGCCCGAA ========== ====== ====== ====== ========== ============================= 5 29 36 GTTTCAGACGAACCCTTGTGGGGTCGAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,7] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTTCAGACGAACCCTTGTGGGTTTGAAGC with 90% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-5.30,-4.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [81,882] Score: 0.18/0.18 # # Final direction: F [0.87,0.55 Confidence: LOW] >NC_018224 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 842751 30 100.0 34 ACTGGCCATG .............................. CAGGCGTGGCGCGTTCGCAAGCGAGCTGGGCTCG 842815 30 100.0 34 GCTGGGCTCG .............................. GTGAGCCATCCGAGCACCAAGACCCCCATCGAGA 842879 30 100.0 35 CCCATCGAGA .............................. TCGCTCCAGATTTCGGGAGCGACATAGAGTTTCCG 842944 30 100.0 37 AGAGTTTCCG .............................. GACATACGCCTGCTCGTGTCCTTCCGGTTTGTCGTCG 843011 30 100.0 37 TTTGTCGTCG .............................. CCGAACCGCTCGCGCTGGCGCTGGCTGTGGCTCATGG 843078 30 100.0 34 TGGCTCATGG .............................. TCCTCGCGGTACGCGGCCAGGTGAGCCGCCGCGA 843142 30 100.0 36 GCCGCCGCGA .............................. TGTACCAGCAGTACCCGGCTGTCTCGACCCACGGCG 843208 30 100.0 36 ACCCACGGCG .............................. TCGAGGGCCTCGCGGGCGGTGTGGCCGCCCTCTCCG 843274 30 100.0 35 GCCCTCTCCG .............................. TGGCCGTCTGCGCCAGTCCCCGAGGCGTTCGTCGA 843339 30 100.0 35 CGTTCGTCGA .............................. ATTGATCGGACCTCCGGGTTACTTGTAGGCAATCA 843404 30 100.0 35 TAGGCAATCA .............................. GAATCCTCGAGGATCGGCGGCCAGCTGGCTGAACA 843469 30 100.0 35 TGGCTGAACA .............................. GCAGACTACATCCTCGCCTGGCGGTTCCTCGACGC 843534 30 100.0 37 TCCTCGACGC .............................. GGTTCGAGCTCCGGGTTGGTAGGGTCCTCGAGGTCAT 843601 30 100.0 36 TCGAGGTCAT .............................. GCCCTTCGAGAGTAGACCAGTCACGCTTGATTTGAC 843667 30 100.0 34 TTGATTTGAC .............................. ATCGATGTCACCCTCGCGATCAAGAGTCGAATTG 843731 30 100.0 33 AGTCGAATTG .............................. ACGTCGTCACCGCCGACGGGACGAACACGGTCG 843794 30 100.0 35 AACACGGTCG .............................. GTGCGTCATGATCTAGCTGCGTACGGGGCCACCCC 843859 30 100.0 35 GGGCCACCCC .............................. CGCTGCGCCGCCGCCACCGCCACCACCTTCTCCGA 843924 30 100.0 35 CCTTCTCCGA .............................. GCGTTAGACTCCTCGACGCTGGTAAAAGTCTACGG 843989 30 100.0 35 AAGTCTACGG .............................. AGAATGTATGACTCCTACCCGATATCGGAGGCTAT 844054 30 100.0 36 CGGAGGCTAT .............................. AGGAGACGGAGAACGCCTCTACTTTCGCGGAGACTC 844120 30 100.0 37 GCGGAGACTC .............................. CCGGGAAACAGACGCATGTCACCGGATGAAAGAGGAA 844187 30 100.0 35 GAAAGAGGAA .............................. CTCGACAGGAACCCCTCGTAAACAACGATATACAG 844252 30 100.0 35 CGATATACAG .............................. ACGGTAAGCTACAGGAGGGAAAAGAGAACGTCCCA 844317 30 100.0 35 GAACGTCCCA .............................. GGAGTCTCCCGGACGAGTATCAGGAAGGGCTACAA 844382 30 100.0 36 AGGGCTACAA .............................. AGACACAGACATGGGAGACGAAACCCCCGAAGGCGA 844448 30 100.0 36 CCGAAGGCGA .............................. ACAGGTCGAGTCAATTTTATCGCCATTCGGAAATCC 844514 30 100.0 33 TCGGAAATCC .............................. CGGCTATCATCACTTCGCTGTCCGACTGACCGG 844577 30 100.0 37 GACTGACCGG .............................. GCGAACGATACGTCGCCCAACTCGAGGTGTCAGGCAC 844644 30 100.0 36 TGTCAGGCAC .............................. GATCACACCAAACGTGAATTGGACGCGGTCACGCTG 844710 30 100.0 36 GGTCACGCTG .............................. TGTCTGTGGGTACTGCGGTGCGCAGGCCGAGCTTGC 844776 30 100.0 37 CCGAGCTTGC .............................. CGCTGTGGCGTCGCCGCGGATGTGCAACGACGCGATC 844843 30 100.0 37 CGACGCGATC .............................. TACGAGCAGGATGATGAGCAGGATGACGAATAGACGA 844910 30 100.0 37 GAATAGACGA .............................. TGCCCCGACTGCGAAACGTGGGTCGGATGGAAGCGCG 844977 30 100.0 37 TGGAAGCGCG .............................. GAGCAGATCAATCAGCAGGCCCAGACCGTCCAAGACA 845044 30 100.0 36 GTCCAAGACA .............................. CTGGCGCGGTGCGTCGGGAGAACGGTATCGACCTGA 845110 30 96.7 ATCGACCTGA .............................A CTCTATAAG ========== ====== ====== ====== ========== ============================== 37 30 35 GTTACAGACGGACCCTTGTGGGGTCGAAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [6,6] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 90% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [114,529] Score: 0.18/0.18 # # Final direction: F [1.28,0.45 Confidence: MEDIUM] >NC_018227 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2627395 36 100.0 41 NNNNNNNNNN .................................... CTGGAGTTCCTCGCGACCGCTCCCCCGGGCGACATCCTGAT 2627472 36 100.0 37 NNNNNNNNNN .................................... ATTCTCTGTAAGATGCTGTGTAATCTCGTAAAGAATC 2627545 36 100.0 37 NNNNNNNNNN .................................... AAACCGTTCCCTATCTTTGACTCTGATAACTATGTAA 2627618 36 100.0 37 NNNNNNNNNN .................................... CAAAGCGAGCGATGCTAACACCGGGGGTCGGGAATAT 2627691 36 100.0 41 NNNNNNNNNN .................................... TATTGTAACAAGCCTTATGTGGAGTAGTGCATGTGATACTC 2627768 36 100.0 36 NNNNNNNNNN .................................... CAGGGATGGTTGCTACACGCGCTACATCTCCCATAA 2627840 36 100.0 38 NNNNNNNNNN .................................... TTTCATTCTTTGCATCAAGAACTGTTACATAACAACCG 2627914 36 100.0 38 NNNNNNNNNN .................................... TATTGCAGTGAGTATGCTTTGCTGCCCATTCGTCACCA 2627988 36 100.0 37 NNNNNNNNNN .................................... TCGTTGAGGGCGTCCCGCTCCCGGGGCATCCGAGTAT 2628061 36 100.0 35 NNNNNNNNNN .................................... CTTTTGACATCTGGATCATGGCAGCGTATGACTGT 2628132 36 100.0 39 NNNNNNNNNN .................................... TCTTACAACACGCATCTCGGATGGTTCTGCCGCAAAAAT 2628207 36 100.0 36 NNNNNNNNNN .................................... GTGAACGGACGAGGGGTGCACCGGGTCGGGGACGCA 2628279 36 100.0 38 NNNNNNNNNN .................................... CGCTCGGCAATCACTTCGTCGAGGCGGCGTTTCGGGAC 2628353 36 100.0 37 NNNNNNNNNN .................................... GCATTATAAAACGGTGAAACGCTGATATGCCTTGAAT 2628426 36 100.0 38 NNNNNNNNNN .................................... CAGTTTCCAGCACCATCAGACTGTAACCCTACACCGAT 2628500 36 100.0 35 NNNNNNNNNN .................................... GCAAGTGGATTGGAAACATCCATAGAGGTATACAA 2628571 36 100.0 36 NNNNNNNNNN .................................... CTCGCATGATGATATGATTGCCTACACTGAATTTGG 2628643 36 100.0 36 NNNNNNNNNN .................................... GGCACCTGTTGCCCCAGGACCGGCACCTGCCCCTCA 2628715 36 100.0 38 NNNNNNNNNN .................................... GCTAATGAAAGGTTTTATTTCGGTTCTCATCCAGATTG 2628789 36 100.0 37 NNNNNNNNNN .................................... CGGTGATATTTCAATGGTAGAGGCACAGGAAATCATG 2628862 36 100.0 38 NNNNNNNNNN .................................... TTATCCATTAAATTTGATTACATATGCAGCACTTATTC 2628936 36 100.0 35 NNNNNNNNNN .................................... AGATATCAGTCTGTGCTCCGCCCAGAACGATTTGA 2629007 36 100.0 39 NNNNNNNNNN .................................... CCTCAATGATTTTTAATTCCAACACAATCATTTGTTGAG 2629082 36 100.0 38 NNNNNNNNNN .................................... ACATCGCCGCCAAGAACATCCTTACACTGTTGGAAAAT 2629156 36 100.0 37 NNNNNNNNNN .................................... GCGATAGGTCCCGGTCTTGTACGGGGTTCTGCCGCCT 2629229 36 100.0 37 NNNNNNNNNN .................................... TTTTCGGATTCTTCTTTAACTCTTCAATCTCATCTTC 2629302 36 100.0 37 NNNNNNNNNN .................................... CAAACGTCATACACATAACCGCAAATGACCAGGAAGA 2629375 36 100.0 39 NNNNNNNNNN .................................... TTCTGTAACCCTTCGAGCACCACTAACCTATCTGCCTCA 2629450 36 100.0 37 NNNNNNNNNN .................................... GTTTTAACCTTGAAAATTGTTAATGGATTAGCATTAA 2629523 36 100.0 39 NNNNNNNNNN .................................... ATCGAGTATAACATCAAAGATGTCTACCTTATGGTGAAG 2629598 36 100.0 37 NNNNNNNNNN .................................... CGTGGAAATATACTTCTGATAAATATATAGTTGAGGT 2629671 36 100.0 39 NNNNNNNNNN .................................... CAAACGTGCGACGTCGCCGGGTCCCTCTCCACCTCCGCC 2629746 36 100.0 36 NNNNNNNNNN .................................... AATGATAACGGGAAAGTGTTGCACCTGTCTGATTCT 2629818 36 100.0 37 NNNNNNNNNN .................................... CGGCAGGTCTCATCCCGCTCCCACCGCGAGCCGGACC 2629891 36 100.0 36 NNNNNNNNNN .................................... AATTATCCACTCATAATTATGCGTGAGATAATCCTC 2629963 36 100.0 38 NNNNNNNNNN .................................... TTGCCTATGTCGTACCTATCTGTATTCTGTAGGTAGGT 2630037 36 100.0 37 NNNNNNNNNN .................................... AATCCGTCTGATGAGTGGAAACAATGTGTTAAGGAAG 2630110 36 100.0 38 NNNNNNNNNN .................................... AGGATATCCTCATTCGTCCCGGTCCATTCCGTTGCCCC 2630184 36 100.0 38 NNNNNNNNNN .................................... AAGTCTCCCACACCATGAACAACTCTATCCCACACGAT 2630258 36 100.0 36 NNNNNNNNNN .................................... CGGGCGCACCGGGCCGTCTTCATGCGCGAGTTCGAG 2630330 36 100.0 36 NNNNNNNNNN .................................... CCGGTATCCTCGATAGATGCGAATGTCGAGATATGG 2630402 36 100.0 37 NNNNNNNNNN .................................... ACCGGCCCTGAAGGCGATACTGTGTCGTATGTTTAAT 2630475 36 100.0 38 NNNNNNNNNN .................................... CCGTCATACGGGCGAGGATGTCGGCCGGGAGATGGATC 2630549 36 100.0 39 NNNNNNNNNN .................................... GCCGCGGAGATCGAGGCGGAGATCAAGAGCCGGGCTCCG 2630624 36 100.0 38 NNNNNNNNNN .................................... GGGTTCCGGCCGGCGCTGATCAGGGCATATTTGGTGCT 2630698 36 100.0 37 NNNNNNNNNN .................................... AACACCGCGTTCGGCGTGGACTGGGTGGCCATCGCCC 2630771 36 100.0 38 NNNNNNNNNN .................................... GTATTTTTAATGTCTTCATCCTCGCATCCTCCCTGCCA 2630845 36 100.0 37 NNNNNNNNNN .................................... CGTCGATGTAGAAAGTGATTGTTGACCCGGATCTGAC 2630918 36 100.0 37 NNNNNNNNNN .................................... ATGCGGACTCCCCCCGGCGGTCTCTCGATCACGAGAC 2630991 36 100.0 36 NNNNNNNNNN .................................... CTTCTATAATTATCCAAATAGGATAAGTTTTAGTCC 2631063 36 100.0 38 NNNNNNNNNN .................................... GTTCTAAGGGTAACATGATTACTTCTACTGATAACCGT 2631137 36 100.0 38 NNNNNNNNNN .................................... CCCGGCCCGGCGGAAACGTGCCGCCAGTGCTTCGGGAG 2631211 36 100.0 36 NNNNNNNNNN .................................... GGCCCGCCGCAGTACTGCTGGAGCACGACCGACGGG 2631283 36 100.0 37 NNNNNNNNNN .................................... ACACGGGGCAGGTGGCATGTCGTCGTGATGGCAGATG 2631356 36 100.0 36 NNNNNNNNNN .................................... CCGAAACTCTCTTCTGCTGCCATTCGCATCTCCCGC 2631428 36 100.0 36 NNNNNNNNNN .................................... GAGTGAGTCGGTATCACAATAGACGGCGGTTTCAGC 2631500 36 100.0 38 NNNNNNNNNN .................................... ACCCAGCCTATCAGGTCGGGGTGCTGGAAATCCTCCCG 2631574 36 100.0 36 NNNNNNNNNN .................................... ATGTGGGTGTTCTTCCGGCTTGATGGTCGAATCCAG 2631646 36 100.0 38 NNNNNNNNNN .................................... CCGGCGTGTCGGTGCGCCATCTTGTACCGGCGCAAACC 2631720 36 100.0 36 NNNNNNNNNN .................................... AAGGGTTGTCGTCTCCCCGACTTCGGCCAACTTCTC 2631792 36 100.0 36 NNNNNNNNNN .................................... GACTCGCCCCACACGTAGTGGGAAAGCCCGATGTAC 2631864 36 100.0 36 NNNNNNNNNN .................................... TCTTTCCGCATCGCCCGGACCAGGCTGACCAGATCC 2631936 36 100.0 37 NNNNNNNNNN .................................... GGGGGCGATGCGGCATACGTGCAGGGGTTCCAGATGC 2632009 36 100.0 36 NNNNNNNNNN .................................... TGGTTCGGGCGCTTGATCTCCCGGCCCTTGAGCGGC 2632081 36 100.0 37 NNNNNNNNNN .................................... ACCCACGAAAACCCTTCGATACACCAAACTACCTCAA 2632154 36 100.0 37 NNNNNNNNNN .................................... AGGGGTATCCCGTAGATCTTGCCGTCCGGCCCAAGAA 2632227 36 100.0 36 NNNNNNNNNN .................................... AACAAAAACGCTTACTCACCTTCTCCGGTCCTGGAA 2632299 36 100.0 36 NNNNNNNNNN .................................... TGGAGCATGACGTAGGGCATCCGCTGCCATGCGTCC 2632371 36 100.0 36 NNNNNNNNNN .................................... CCCGAGGACGTCGAGGAGCATCCGGGTCAGGTGCTT 2632443 36 100.0 35 NNNNNNNNNN .................................... GTCGGACATGATGCAACTCACCCCCACACCCCCGC 2632514 36 100.0 37 NNNNNNNNNN .................................... CATTGCGGGTCATGTCGAGGCCGAACGGGATTTCGAC 2632587 36 100.0 38 NNNNNNNNNN .................................... TACCCCACCGGGATTCAGCCTTAGCCAAATCTGCAGCC 2632661 36 100.0 39 NNNNNNNNNN .................................... CGCTCCCCCGGGCGCATGGCCGTTATCGACGACTGGCAC 2632736 36 100.0 36 NNNNNNNNNN .................................... CGGGCCGTGGACTGCATCGTCCCGCCCGACTCGGCA 2632808 36 100.0 40 NNNNNNNNNN .................................... TACTTGGGGGGAGGCGACGATGAGTGATGATCTCATCCTC 2632884 36 100.0 38 NNNNNNNNNN .................................... TCGGCCGCGCATCGCACTTTCGCCCACGCAAACCGCCC 2632958 36 100.0 37 NNNNNNNNNN .................................... GGTCTGTAAGGGTTGCCCGGCGCGTATTGAGGGGCGT 2633031 36 100.0 36 NNNNNNNNNN .................................... CGAGGTCATCCTCGGGGCGACGCTACCGTTGGAAAA 2633103 36 100.0 37 NNNNNNNNNN .................................... TCGTCTGCGCTGCCTCTCGAGATTCGAGACTTGCAGG 2633176 36 100.0 37 NNNNNNNNNN .................................... AGTTATTCGACGGTCTGTACAGTTGGTAGACTGTAGT 2633249 36 100.0 38 NNNNNNNNNN .................................... TTGCATTTCCTTAAATTCATTAGTAGGAATATAACCGT 2633323 36 100.0 38 NNNNNNNNNN .................................... GACGGCATCGAGCTGAAAAACCCGGCCCCGTTCAACCT 2633397 36 100.0 36 NNNNNNNNNN .................................... AACCTGGAGGTGTCCGACCTCGCCCACGTCTCTGAC 2633469 36 100.0 39 NNNNNNNNNN .................................... TGCCATCGGTGATCGTCACCGCTGCGGAGGTGGTCGCGG 2633544 36 100.0 37 NNNNNNNNNN .................................... CGGTTCCGGCTCCGCGACACCTCTCCCTGGGCGCCGA 2633617 36 100.0 39 NNNNNNNNNN .................................... CGCGAGGTGCGACGGGTGCTCAGGGATGACGGCGTGCTC 2633692 36 100.0 40 NNNNNNNNNN .................................... AATAATCTGGATTTTTATCATAATCATCGAGACACCCCAT 2633768 36 100.0 37 NNNNNNNNNN .................................... CAGAAGGAGGTTATCAGGCTCAATGCAGAAGCATTCG 2633841 36 100.0 38 NNNNNNNNNN .................................... ACAAATCACAACGCGCGCTCGCTCGTAACGCTGAGTAT 2633915 36 100.0 37 NNNNNNNNNN .................................... CTTCTGTGCCGCACCGACCGCTTCTGGGTAGCGGACG 2633988 36 100.0 36 NNNNNNNNNN .................................... CAACGTAAAGCGCTGCCTCTCGCATCTTTTTCATCG 2634060 36 100.0 37 NNNNNNNNNN .................................... TGGTTCCCGTCGAGGAGGATAAATAGATAGTAGCCTC 2634133 36 100.0 37 NNNNNNNNNN .................................... GGTGATACCGGAGTCGTCGCACCTATCGATACCACCG 2634206 36 100.0 36 NNNNNNNNNN .................................... CCGTTTCCGCGCAAGGCGTGGTTGCCCCTATTGTGC 2634278 36 100.0 40 NNNNNNNNNN .................................... CGGAGAGTAAATCTGCAACTGTTTGGGCTTCTAGAAGCAC 2634354 36 100.0 38 NNNNNNNNNN .................................... TTAGCGGTAATACCTTTGGGCGCTTTTCCTGCCAGGTA 2634428 36 100.0 39 NNNNNNNNNN .................................... CAAGGAAAGTTTACGACGTGGCATACCCCAGAATACTTG 2634503 36 100.0 34 NNNNNNNNNN .................................... AAAGGGAGTGTTAAACTTATTGATAAGTTGGTCC 2634573 36 100.0 37 NNNNNNNNNN .................................... CGACCCCCATCTGCTTGTAGTTGGTCGGTACGATGAC 2634646 36 100.0 36 NNNNNNNNNN .................................... ATCACCGGTGGGAAAACCTCGCAAACGGACTCACAG 2634718 36 100.0 37 NNNNNNNNNN .................................... CTGGTGGACTTCGGCGAGACCCCCTCATCCCCGATGC 2634791 36 100.0 38 NNNNNNNNNN .................................... TACAGAATGCGATCAGGTCTCTCACGAACGGTAACTCT 2634865 36 100.0 36 NNNNNNNNNN .................................... CGGAGCGATTCATCGACACCGAACTCTTCCAGCAAC 2634937 36 100.0 36 NNNNNNNNNN .................................... GGGTTCGACGTATCGTAAGGTAGGATAAGCGTGGCA 2635009 36 100.0 38 NNNNNNNNNN .................................... CTCTCGAGCCGACAGAGCAACCGACTGGGTGGCCGAGC 2635083 36 100.0 39 NNNNNNNNNN .................................... GGATCTGGTGTCTTCATTGAAATTTCCTCCGTGCATCGT 2635158 36 100.0 38 NNNNNNNNNN .................................... AAACTATCTTCTATCGACGCTGAACGGTTTTTCCCCCA 2635232 36 100.0 37 NNNNNNNNNN .................................... TAGGGGGTTCGGTCGGCCACCCGGTCGGTTGCTCTGT 2635305 36 100.0 39 NNNNNNNNNN .................................... ATTGGCTATCTGGACGCAAAACGCGGGCGTCGGGTTATC 2635380 36 100.0 42 NNNNNNNNNN .................................... ACAGATACCGTATCGCACCTGCATTTTGAGCCGGTTTATCCA 2635458 36 100.0 38 NNNNNNNNNN .................................... AGCCGTCGAAAATCCTACTCCGAATGCCAGGCCAATGC 2635532 36 100.0 37 NNNNNNNNNN .................................... GTCGGTGGGCGCGGAGCGAAATGATATTTTGCGTGAG 2635605 36 100.0 41 NNNNNNNNNN .................................... CCCGCCGAGGATTGTGTCGATATCGATGCCTCGCAGGGCCG 2635682 36 100.0 37 NNNNNNNNNN .................................... GAGGTCGCCGCCCCCGGACCCGGCTCCCACCTGCTCC 2635755 36 100.0 36 NNNNNNNNNN .................................... ATGAGTAAGGCGATCGCCTGCAGGTCTCGAAACTCT 2635827 36 100.0 37 NNNNNNNNNN .................................... TTCCGAAGTTTTCGAGATTCATCTTCATTTCCTCCAG 2635900 36 100.0 37 NNNNNNNNNN .................................... TACTCCTCCTCGTAGTAGGGTTGTATATCGGTAATCG 2635973 36 100.0 36 NNNNNNNNNN .................................... ACGAGACGGACGACGAGAGCGACGATTTCGCGATCG 2636045 36 100.0 36 NNNNNNNNNN .................................... CTCGATGAGGACGAGCGGGAGAATGCGGACCTGCTC 2636117 36 100.0 37 NNNNNNNNNN .................................... CACCAGACCGAGCGGATCAAGGTCATCTACTCCGGCC 2636190 36 100.0 37 NNNNNNNNNN .................................... ATCCCAGGTCATGATGCGATCCTCTGGCGGCTGCTCG 2636263 36 100.0 35 NNNNNNNNNN .................................... GCGAGATACTCGGCCTCGCTCTTGACAGTGGCCTC 2636334 36 100.0 37 NNNNNNNNNN .................................... AGGAGTTTATCGACCGAGGCTATCTCGTGCCGCTCCT 2636407 36 100.0 36 NNNNNNNNNN .................................... CCGGGCTCGGCGCTCCTGGTCGGTCGGATAGGGGAT 2636479 36 100.0 38 NNNNNNNNNN .................................... CAGTAGTTGCGGATTTAGCGCTAATTGTCCCAGTTTGC 2636553 36 100.0 40 NNNNNNNNNN .................................... TCCTCGCGTATTACATACATAAGGGGGAGGGGGGGGACAT 2636629 36 100.0 37 NNNNNNNNNN .................................... TAGCCGAGGAGGAGGCCGACCGTCCAATCAGGATCTT 2636702 36 100.0 36 NNNNNNNNNN .................................... GCGAACCCGTCCGCTTCCCGTGCGGCTGCGCCCTGC 2636774 36 100.0 36 NNNNNNNNNN .................................... GGTGACCGGCAGATCGGCTGCGTCGCGGTACTCCCT 2636846 36 100.0 36 NNNNNNNNNN .................................... GACTGGAACAACAACCCCCCCCGGAGCGTCGCACAG 2636918 36 100.0 36 NNNNNNNNNN .................................... ACGACCTCGTAGCGGCCCCCGGAGGGATGGATGGAA 2636990 36 100.0 35 NNNNNNNNNN .................................... GACGCCTGATCATAGGCGGTCTTCGCTCCATCGGC 2637061 36 100.0 37 NNNNNNNNNN .................................... AGATGCAGAAACTGATGCAGCGATACGTCCCGGCCGG 2637134 36 100.0 38 NNNNNNNNNN .................................... CTGTATTGCCCGACTGGAGGCGATGGAGCGACGCGGAC 2637208 36 100.0 37 NNNNNNNNNN .................................... TTGGTCGCATTCGCTCTTCTCCCGACGGGGAGAACCT 2637281 36 100.0 38 NNNNNNNNNN .................................... ATCAGGCTGCCGAGTTCTCGCTCTATCGTCGGGGCGTC 2637355 36 100.0 36 NNNNNNNNNN .................................... GGTGACGACGGTCTGGGCCTGGAGCGCTTCGATGTT 2637427 36 100.0 36 NNNNNNNNNN .................................... ATATGTATGTGGCTCGGTATCCTTTGGGTCGACCGA 2637499 36 100.0 35 NNNNNNNNNN .................................... CTACTGCTCCTGATTGCGCCTAATCCGGATTACGC 2637570 36 100.0 39 NNNNNNNNNN .................................... ACCGGTGAGGTAGCCGCTTTCAGCGGTTACCAGGATATC 2637645 36 100.0 35 NNNNNNNNNN .................................... GCGACCGTGCCGGTCACGTGCCACCCGCTCCGGCG 2637716 36 100.0 36 NNNNNNNNNN .................................... AGGGAGAGTGCGATGATGCCTCGATCGGCCCACTCT 2637788 36 100.0 36 NNNNNNNNNN .................................... GCCCTGGTCCGATGCCCTATTATCCCGGCCCCGAAC 2637860 36 100.0 36 NNNNNNNNNN .................................... GTCATGATGGCAGGGGCCTCAAAGTATCCCTGCTCG 2637932 36 100.0 35 NNNNNNNNNN ............TTTC.................... ATCGTCACCGCGATCGTGATGGCGATGGTGGCCAT 2638003 36 100.0 1 NNNNNNNNNN ...............G.A.TCCTCAA..TGACG.TT NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 146 36 37 CTTACCATGTCTGAAAAGACATGGCTCCATTGAAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.90,-7.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [60.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [578,24] Score: 0.18/0.18 # # Final direction: F [1.23,0 Confidence: HIGH] >NC_018266 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 6446711 20 100.0 39 NNNNNNNNNN ........A..C........ GTCCTGTCGTGTAGCGGGTGTCGTCGTCGTTGGGGACGT 6446770 20 100.0 40 NNNNNNNNNN .TT..C.............. GTCCCTGCCCGTGGCGGAACCTGATCGTCACCAAGCCGCT 6446830 20 100.0 41 NNNNNNNNNN ....AT.............. GTGCCGCGCCTTCGTCCCAGCTGGCCGGCTCGACGATATTT 6446891 20 100.0 38 NNNNNNNNNN ..................G. GTCCCAGGGAGATCGACACGTCGGACAGCGTTTCGCGG 6446949 20 100.0 40 NNNNNNNNNN .T.................. GTCCCGGAAGCCGGTTGAGCTTCGCGCCGCACCGTCCGTT 6447009 20 100.0 39 NNNNNNNNNN .G................C. GTCCGCAGGCCGACTACGAGAAGCAGAGCCCGCAGGAGC 6447068 20 100.0 41 NNNNNNNNNN ......T..........T.. GTCCGATCCCGCAGTAGCGACAGGTGTCGCCGTCGCGGTTT 6447129 20 100.0 41 NNNNNNNNNN .......A.G.A........ GTCCGCACACGATCGGCGGTTTCACCCGACCTTCGCGGTCG 6447190 20 100.0 41 NNNNNNNNNN .................... ATCCCGCATTGGCTAGATTGTTCTGGAAAGTCTGATCGTTG 6447251 20 100.0 41 NNNNNNNNNN .............T...... ATCCCGTCTCGAACGTCGTGGGCGAGACGACGTGCTCGTTG 6447312 20 100.0 41 NNNNNNNNNN .................T.. GTCCCGACTTCAAGCTGCGCCTGGTCACCCTCGGCGTGTCG 6447373 20 100.0 41 NNNNNNNNNN ........A........... GTCCGCCGTTCGGGTCGCACTCGTACGTGGGCAGATCGTCG 6447434 20 100.0 43 NNNNNNNNNN ...................T GGGTCCCGTCACCTGCCCGCCGGGCTACACCAGCCTGTTGTCG 6447497 20 100.0 42 NNNNNNNNNN ...........A..A..... GTCCGGACGGCGTCAAGAACTGGTACGACGAAGTGGCAGTCG 6447559 20 100.0 41 NNNNNNNNNN ....T..A............ GTCCCTACGTGTACGTTGGCGCCTACGGAACAGGAACGTCG 6447620 20 100.0 40 NNNNNNNNNN .................... GTCCCGCTCGGGCAGCTCAACCTCGCCACTGTCTACCTTG 6447680 20 100.0 1 NNNNNNNNNN .T...A.............. NNNNNNNNNN ========== ====== ====== ====== ========== ==================== 17 20 40 TCCCCGCGCACGCGGGGCTG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [11-9] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [55.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1073,95] Score: 0.18/0.18 # # Final direction: R [0.45,0.78 Confidence: LOW] >NC_018406 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 888405 36 100.0 30 NNNNNNNNNN .................................... AATCGAATAATTATGTTCAGATGTACTTTG 888471 36 100.0 30 NNNNNNNNNN .................................... GAAACGGCCGCAAGTTACTTACATACAATT 888537 36 100.0 30 NNNNNNNNNN .................................... TTTGCATATTTAGATCGTTACTTTGACAAA 888603 36 100.0 30 NNNNNNNNNN .................................... AATAAATTTAAAATTGCCGATTGTGTTCAA 888669 36 100.0 30 NNNNNNNNNN .................................... AAAGCCCCGAACAACTAGCTTTCGAAAAGA 888735 36 100.0 30 NNNNNNNNNN .................................... ATTCATTAACAAAAAAGATGTTAAATAAAC 888801 36 100.0 30 NNNNNNNNNN .................................... TTTTTTCAAAATTATACAATAACGATTTAA 888867 36 100.0 30 NNNNNNNNNN .................................... CAGATTTTAAGAAAGAACGTTTAATTACAA 888933 36 100.0 30 NNNNNNNNNN .................................... GTAATACTCAAGAACTGCATCGCGCAAGTC 888999 36 100.0 30 NNNNNNNNNN .................................... AAGTAACTTGCAGCCGTTTCATGATCAAGT 889065 36 100.0 30 NNNNNNNNNN .................................... ATCTTGTTATTATTAGCGTTTATTTGGCCA 889131 36 100.0 30 NNNNNNNNNN .................................... TCTTGTGTCTTGAAACTTGCTATAAAAGTA 889197 36 100.0 30 NNNNNNNNNN .................................... AAATAAGGGATATCAAACGACATATTATGC 889263 36 100.0 30 NNNNNNNNNN .................................... AAAGTTGTATTGTGTTTGAACCATTTCACT 889329 36 100.0 29 NNNNNNNNNN .................................... ATTTAACAAAGAATGAGATCGAATTGAGT 889394 36 100.0 30 NNNNNNNNNN .................................... AGGTTGTTCATGATTGACATTAAAATTAAA 889460 36 100.0 30 NNNNNNNNNN .................................... ATTCAATTGCGTTTTTTAAACGTACAAATA 889526 36 100.0 30 NNNNNNNNNN .................................... TTTGTTTTTATCTTGATTCGAAAGACATTA 889592 36 100.0 30 NNNNNNNNNN .................................... ATTCTGCCGCCACGATATCGATTTCAGTTC 889658 36 100.0 31 NNNNNNNNNN .................................... TTTTTTGTTAATGAATTAAAAATCTTATCAG 889725 36 100.0 30 NNNNNNNNNN .................................... TTTTTTAAGCTCATCTTCAAGGTGTTGATT 889791 36 100.0 30 NNNNNNNNNN .................................... TTTAAGCGTTCCGATCGTTTGTCAAATGTG 889857 36 100.0 30 NNNNNNNNNN .................................... AACTTATCTGCATAACCCTTTTGAATCTCT 889923 36 100.0 30 NNNNNNNNNN .................................... AAGTTGATCATTTAAATGAGCTTTTAAAAA 889989 36 100.0 30 NNNNNNNNNN .................................... ACGTTTGAGGTTCAGCTAATTCTGGGGTTA 890055 36 100.0 30 NNNNNNNNNN .................................... TAATTAATCGCGATAATACAATGTATTTTG 890121 36 100.0 30 NNNNNNNNNN .................................... TTTGATCATCGACTGTTCAAAGAAGGCGTA 890187 36 100.0 30 NNNNNNNNNN .................................... TAGTTAAATTAATTTTTAAAGGATGGTTTA 890253 36 100.0 30 NNNNNNNNNN .................................... TAATAATCTTAATTTTAGTGTGTTTGTCGT 890319 36 100.0 30 NNNNNNNNNN .................................... GAATTAAATTATCTTTATAAGTAAAATAAA 890385 36 100.0 30 NNNNNNNNNN .................................... TAATAATCTTAATTTTAGTGTGTTTGTCGT 890451 36 100.0 30 NNNNNNNNNN .................................... GAATTAAATTATCTTTATAAGTAAAATAAA 890517 36 100.0 30 NNNNNNNNNN .................................... GTTTTGCTTATAAATTGTTACAAGACTTCT 890583 36 100.0 30 NNNNNNNNNN .................................... ATTCTGCCGCCACGATATCGATTTCTGTTC 890649 36 100.0 30 NNNNNNNNNN .................................... ATGGTGACGAATATAAACCCCAACTTGATC 890715 36 100.0 30 NNNNNNNNNN .................................... CAACAGCCGTTGTTAAAATTAAAAAAACTA 890781 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 37 36 30 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.70,-2.60] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [78.3-81.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [23,84] Score: 0.18/0.18 # # Final direction: R [0,0.18 Confidence: MEDIUM] >NC_018266 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 6451342 28 100.0 33 NNNNNNNNNN ..TA.......ACG.............. CACGATGCCGCGCTCGACGAACACCTCGTTCCC 6451403 28 100.0 33 NNNNNNNNNN ............................ CTCGGCCAGCACCCGGCGGAGGTTCCGGATACT 6451464 28 100.0 33 NNNNNNNNNN .........A.................. GATCGATTCGCTGAGGACCTCCGGCAGCACGAT 6451525 28 100.0 33 NNNNNNNNNN ............C..CT........... GGTGAAGGGCCTCTCCCCGGCCGGGCAGCGGTA 6451586 28 100.0 33 NNNNNNNNNN ............................ CCACACCGGCAAGCCCGAGGCGATCCTCACGCA 6451647 28 100.0 33 NNNNNNNNNN ........T....T.............. CGACACGACGGCGAGCCGGTCGTCGCGTTCCTT 6451708 28 100.0 1 NNNNNNNNNN .......................CC... NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 7 28 33 GTCGTCCCCGCGTACGCGGGGCTGGTCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-12.70,-13.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [5-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [35.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [558,502] Score: 0/0.18 # # Final direction: R [0.68,0.74 Confidence: LOW] >NC_018407 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 877688 36 100.0 30 NNNNNNNNNN .................................... AATCGAATAATTATGTTCAGATGTACTTTG 877754 36 100.0 30 NNNNNNNNNN .................................... GAAACGGCCGCAAGTTACTTACATACAATT 877820 36 100.0 30 NNNNNNNNNN .................................... TTTGCATATTTAGATCGTTACTTTGACAAA 877886 36 100.0 30 NNNNNNNNNN .................................... AATAAATTTAAAATTGCCGATTGTGTTCAA 877952 36 100.0 30 NNNNNNNNNN .................................... TTATAACAGATAATAACACTTGACGCGCTT 878018 36 100.0 30 NNNNNNNNNN .................................... TCAGATAATTCTTCAACTGCAACAACGTTA 878084 36 100.0 30 NNNNNNNNNN .................................... TTTATAACAACAGATTACGCTTTTTTATTC 878150 36 100.0 30 NNNNNNNNNN .................................... TTATTTATTAAACGACGAACAAAGACGTTT 878216 36 100.0 30 NNNNNNNNNN .................................... TTGGGCTAATTTACCGTATAAACTATTAAG 878282 36 100.0 30 NNNNNNNNNN .................................... AAAGCCCCGAACAACTAGCTTTCGAAAAGA 878348 36 100.0 30 NNNNNNNNNN .................................... ATTCATTAACAAAAAAGATGTTAAATAAAC 878414 36 100.0 30 NNNNNNNNNN .................................... TTTTTTCAAAATTATACAATAACGATTTAA 878480 36 100.0 30 NNNNNNNNNN .................................... CAGATTTTAAGAAAGAACGTTTAATTACAA 878546 36 100.0 30 NNNNNNNNNN .................................... GTAATACTCAAGAACTGCATCGCGCAAGTC 878612 36 100.0 30 NNNNNNNNNN .................................... ATCTTGTTATTATTAGCGTTTATTTGGCCA 878678 36 100.0 30 NNNNNNNNNN .................................... TCTTGTGTCTTGAAACTTGCTATAAAAGTA 878744 36 100.0 30 NNNNNNNNNN .................................... AAAGTTGTATTGTGTTTGAACCATTTCACT 878810 36 100.0 30 NNNNNNNNNN .................................... AGGTTGTTCATGATTGACATTAAAATTAAA 878876 36 100.0 30 NNNNNNNNNN .................................... ATTCAATTGCGTTTTTTAAACGTACAAATA 878942 36 100.0 30 NNNNNNNNNN .................................... TTTGTTTTTATCTTGATTCGAAAGACATTA 879008 36 100.0 30 NNNNNNNNNN .................................... ATTCTGCCGCCACGATATCGATTTCAGTTC 879074 36 100.0 30 NNNNNNNNNN .................................... ATAAGAACAAGAACTATCTAACGCTTTTTT 879140 36 100.0 30 NNNNNNNNNN .................................... GTAAGTTGTCGATCTCTTCACTAACGACAG 879206 36 100.0 30 NNNNNNNNNN ......A............................. TTGTTGAGCTAATTGGACTTAAAGCAAATA 879272 36 100.0 30 NNNNNNNNNN .................................... TTGAAATTTGAATGTTTGGAAATCTTCACG 879338 36 100.0 31 NNNNNNNNNN .................................... GCAATAGTTTGTAAGCAAAACGTGGGAGGGG 879405 36 100.0 30 NNNNNNNNNN .................................... AATTAAAAGTTAAGAACGTTGTTGCTGACG 879471 36 100.0 30 NNNNNNNNNN .................................... TAGTGTATTTTAACCACCGTTCAAGCGCTC 879537 36 100.0 31 NNNNNNNNNN .................................... TTTTTTGTTAATGAATTAAAAATCTTATCAG 879604 36 100.0 30 NNNNNNNNNN .................................... TTTTTTAAGCTCATCTTCAAGGTGTTGATT 879670 36 100.0 30 NNNNNNNNNN .................................... TTTAAGCGTTCCGATCGTTTGTCAAATGTG 879736 36 100.0 30 NNNNNNNNNN .................................... AACTTATCTGCATAACCCTTTTGAATCTCT 879802 36 100.0 30 NNNNNNNNNN .................................... AAGTTGATCATTTAAATGAGCTTTTAAAAA 879868 36 100.0 30 NNNNNNNNNN .................................... ACGTTTGAGGTTCAGCTAATTCTGGGGTTA 879934 36 100.0 30 NNNNNNNNNN .................................... TAATTAATCGCGATAATACAATGTATTTTG 880000 36 100.0 30 NNNNNNNNNN .................................... TTTGATCATCGACTGTTCAAAGAAGGCGTA 880066 36 100.0 30 NNNNNNNNNN .................................... TAGTTAAATTAATTTTTAAAGGATGGTTTA 880132 36 100.0 30 NNNNNNNNNN .................................... TAATAATCTTAATTTTAGTGTGTTTGTCGT 880198 36 100.0 30 NNNNNNNNNN .................................... GAATTAAATTATCTTTATAAGTAAAATAAA 880264 36 100.0 30 NNNNNNNNNN .................................... TAATAATCTTAATTTTAGTGTGTTTGTCGT 880330 36 100.0 30 NNNNNNNNNN .................................... GAATTAAATTATCTTTATAAGTAAAATAAA 880396 36 100.0 30 NNNNNNNNNN .................................... GTTTTGCTTATAAATTGTTACAAGACTTCT 880462 36 100.0 30 NNNNNNNNNN .................................... ATTCTGCCGCCACGATATCGATTTCTGTTC 880528 36 100.0 30 NNNNNNNNNN .................................... ATGGTGACGAATATAAACCCCAACTTGATC 880594 36 100.0 30 NNNNNNNNNN .................................... CAACAGCCGTTGTTAAAATTAAAAAAACTA 880660 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 46 36 30 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.70,-2.60] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [78.3-81.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [23,84] Score: 0.18/0.18 # # Final direction: R [0,0.18 Confidence: MEDIUM] >NC_018266 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 6448530 28 100.0 33 NNNNNNNNNN ........T................... GGGAGCACTCGCATGACGACCACGGAGCCGGCG 6448591 28 100.0 33 NNNNNNNNNN ............................ CTGGTTGATCCGGATGTCCCAGTCGTCCACCGC 6448652 28 100.0 33 NNNNNNNNNN ............................ CACGGTGGCGGTGGCCTGCTGATACTGGGCGTC 6448713 28 100.0 33 NNNNNNNNNN ............................ AGACGGTTGGGGCAACCTGAAGGCGGCCGGCCT 6448774 28 100.0 1 NNNNNNNNNN ..C..................GCTAGTA NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 5 28 33 GTTGTCCCCGCACGCGCGGGGCTGGTCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-12.70,-13.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [355,198] Score: 0/0.18 # # Final direction: R [0.41,0.74 Confidence: LOW] >NC_018408 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 910569 36 100.0 30 NNNNNNNNNN .................................... AATCGAATAATTATGTTCAGATGTACTTTG 910635 36 100.0 30 NNNNNNNNNN .................................... GAAACGGCCGCAAGTTACTTACATACAATT 910701 36 100.0 30 NNNNNNNNNN .................................... TTTGCATATTTAGATCGTTACTTTGACAAA 910767 36 100.0 30 NNNNNNNNNN .................................... AATAAATTTAAAATTGCCGATTGTGTTCAA 910833 36 100.0 30 NNNNNNNNNN .................................... AAAGCCCCGAACAACTAGCTTTCGAAAAGA 910899 36 100.0 30 NNNNNNNNNN .................................... ATTCATTAACAAAAAAGATGTTAAATAAAC 910965 36 100.0 30 NNNNNNNNNN .................................... TTTTTTCAAAATTATACAATAACGATTTAA 911031 36 100.0 30 NNNNNNNNNN .................................... CAGATTTTAAGAAAGAACGTTTAATTACAA 911097 36 100.0 30 NNNNNNNNNN .................................... GTAATACTCAAGAACTGCATCGCGCAAGTC 911163 36 100.0 30 NNNNNNNNNN .................................... AAGTAACTTGCAGCCGTTTCATGATCAAGT 911229 36 100.0 30 NNNNNNNNNN .................................... ATCTTGTTATTATTAGCGTTTATTTGGCCA 911295 36 100.0 30 NNNNNNNNNN .................................... TCTTGTGTCTTGAAACTTGCTATAAAAGTA 911361 36 100.0 30 NNNNNNNNNN .................................... TGATTAATAATAAAGTCAATCTTTCACATT 911427 36 100.0 30 NNNNNNNNNN .................................... AAATAAGGGATATCAAACGACATATTATGC 911493 36 100.0 30 NNNNNNNNNN .................................... AAAGTTGTATTGTGTTTGAACCATTTCACT 911559 36 100.0 29 NNNNNNNNNN .................................... ATTTAACAAAGAATGAGATCGAATTGAGT 911624 36 100.0 30 NNNNNNNNNN .................................... AGGTTGTTCATGATTGACATTAAAATTAAA 911690 36 100.0 30 NNNNNNNNNN .................................... ATTCAATTGCGTTTTTTAAACGTACAAATA 911756 36 100.0 30 NNNNNNNNNN .................................... TTTGTTTTTATCTTGATTCGAAAGACATTA 911822 36 100.0 30 NNNNNNNNNN .................................... ATTCTGCCGCCACGATATCGATTTCAGTTC 911888 36 100.0 31 NNNNNNNNNN .................................... TTTTTTGTTAATGAATTAAAAATCTTATCAG 911955 36 100.0 30 NNNNNNNNNN .................................... TTTTTTAAGCTCATCTTCAAGGTGTTGATT 912021 36 100.0 30 NNNNNNNNNN .................................... AACTTATCTGCATAACCCTTTTGAATCTCT 912087 36 100.0 30 NNNNNNNNNN .................................... AAGTTGATCATTTAAATGAGCTTTTAAAAA 912153 36 100.0 30 NNNNNNNNNN .................................... ACGTTTGAGGTTCAGCTAATTCTGGGGTTA 912219 36 100.0 30 NNNNNNNNNN .................................... TAATTAATCGCGATAATACAATGTATTTTG 912285 36 100.0 30 NNNNNNNNNN .................................... TTTGATCATCGACTGTTCAAAGAAGGCGTA 912351 36 100.0 30 NNNNNNNNNN .................................... TAGTTAAATTAATTTTTAAAGGATGGTTTA 912417 36 100.0 30 NNNNNNNNNN .................................... TAATAATCTTAATTTTAGTGTGTTTGTCGT 912483 36 100.0 30 NNNNNNNNNN .................................... GAATTAAATTATCTTTATAAGTAAAATAAA 912549 36 100.0 30 NNNNNNNNNN .................................... TAATAATCTTAATTTTAGTGTGTTTGTCGT 912615 36 100.0 30 NNNNNNNNNN .................................... GAATTAAATTATCTTTATAAGTAAAATAAA 912681 36 100.0 30 NNNNNNNNNN .................................... GTTTTGCTTATAAATTGTTACAAGACTTCT 912747 36 100.0 30 NNNNNNNNNN .................................... ATTCTGCCGCCACGATATCGATTTCTGTTC 912813 36 100.0 30 NNNNNNNNNN .................................... ATGGTGACGAATATAAACCCCAACTTGATC 912879 36 100.0 30 NNNNNNNNNN .................................... CAACAGCCGTTGTTAAAATTAAAAAAACTA 912945 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 37 36 30 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.70,-2.60] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [78.3-81.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [23,84] Score: 0.18/0.18 # # Final direction: R [0,0.18 Confidence: MEDIUM] >NC_018409 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 889415 36 100.0 30 NNNNNNNNNN .................................... TTTATAACAACAGATTACGCTTTTTTATTC 889481 36 100.0 30 NNNNNNNNNN .................................... TTATTTATTAAACGACGAACAAAGACGTTT 889547 36 100.0 30 NNNNNNNNNN .................................... AATAAATTTAAAATTGCCGATTGTGTTCAA 889613 36 100.0 30 NNNNNNNNNN .................................... TTATAACAGATAATAACACTTGACGCGCTT 889679 36 100.0 30 NNNNNNNNNN .................................... TCAGATAATTCTTCAACTGCAACAACGTTA 889745 36 100.0 30 NNNNNNNNNN .................................... TTTATAACAACAGATTACGCTTTTTTATTC 889811 36 100.0 30 NNNNNNNNNN .................................... TTATTTATTAAACGACGAACAAAGACGTTT 889877 36 100.0 30 NNNNNNNNNN .................................... TTGGGCTAATTTACCGTATAAACTATTAAG 889943 36 100.0 30 NNNNNNNNNN .................................... AAAGCCCCGAACAACTAGCTTTCGAAAAGA 890009 36 100.0 30 NNNNNNNNNN .................................... ATTCATTAACAAAAAAGATGTTAAATAAAC 890075 36 100.0 30 NNNNNNNNNN .................................... TTTTTTCAAAATTATACAATAACGATTTAA 890141 36 100.0 30 NNNNNNNNNN .................................... CAGATTTTAAGAAAGAACGTTTAATTACAA 890207 36 100.0 30 NNNNNNNNNN .................................... GTAATACTCAAGAACTGCATCGCGCAAGTC 890273 36 100.0 30 NNNNNNNNNN .................................... AAGTAACTTGCAGCCGTTTCATGATCAAGT 890339 36 100.0 30 NNNNNNNNNN .................................... ATCTTGTTATTATTAGCGTTTATTTGGCCA 890405 36 100.0 30 NNNNNNNNNN .................................... TCTTGTGTCTTGAAACTTGCTATAAAAGTA 890471 36 100.0 30 NNNNNNNNNN .................................... AAATAAGGGATATCAAACGACATATTATGC 890537 36 100.0 30 NNNNNNNNNN .................................... AAAGTTGTATTGTGTTTGAACCATTTCACT 890603 36 100.0 29 NNNNNNNNNN .................................... ATTTAACAAAGAATGAGATCGAATTGAGT 890668 36 100.0 30 NNNNNNNNNN .................................... AGGTTGTTCATGATTGACATTAAAATTAAA 890734 36 100.0 30 NNNNNNNNNN .................................... ATTCAATTGCGTTTTTTAAACGTACAAATA 890800 36 100.0 30 NNNNNNNNNN .................................... TTTGTTTTTATCTTGATTCGAAAGACATTA 890866 36 100.0 30 NNNNNNNNNN .................................... ATTCTGCCGCCACGATATCGATTTCAGTTC 890932 36 100.0 30 NNNNNNNNNN .................................... ATAAGAACAAGAACTATCTAACGCTTTTTT 890998 36 100.0 30 NNNNNNNNNN .................................... GTAAGTTGTCGATCTCTTCACTAACGACAG 891064 36 100.0 30 NNNNNNNNNN ......A............................. TTGTTGAGCTAATTGGACTTAAAGCAAATA 891130 36 100.0 30 NNNNNNNNNN .................................... TTGAAATTTGAATGTTTGGAAATCTTCACG 891196 36 100.0 31 NNNNNNNNNN .................................... GCAATAGTTTGTAAGCAAAACGTGGGAGGGG 891263 36 100.0 30 NNNNNNNNNN .................................... AATTAAAAGTTAAGAACGTTGTTGCTGACG 891329 36 100.0 30 NNNNNNNNNN .................................... TAGTGTATTTTAACCACCGTTCAAGCGCTC 891395 36 100.0 31 NNNNNNNNNN .................................... TTTTTTGTTAATGAATTAAAAATCTTATCAG 891462 36 100.0 30 NNNNNNNNNN .................................... TTTTTTAAGCTCATCTTCAAGGTGTTGATT 891528 36 100.0 30 NNNNNNNNNN .................................... TTTAAGCGTTCCGATCGTTTGTCAAATGTG 891594 36 100.0 30 NNNNNNNNNN .................................... AACTTATCTGCATAACCCTTTTGAATCTCT 891660 36 100.0 30 NNNNNNNNNN .................................... AAGTTGATCATTTAAATGAGCTTTTAAAAA 891726 36 100.0 30 NNNNNNNNNN .................................... ACGTTTGAGGTTCAGCTAATTCTGGGGTTA 891792 36 100.0 30 NNNNNNNNNN .................................... TAATAATCTTAATTTTAGTGTGTTTGTCGT 891858 36 100.0 30 NNNNNNNNNN .................................... GAATTAAATTATCTTTATAAGTAAAATAAA 891924 36 100.0 30 NNNNNNNNNN .................................... GTTTTGCTTATAAATTGTTACAAGACTTCT 891990 36 100.0 30 NNNNNNNNNN .................................... ATTCTGCCGCCACGATATCGATTTCTGTTC 892056 36 100.0 30 NNNNNNNNNN .................................... ATGGTGACGAATATAAACCCCAACTTGATC 892122 36 100.0 30 NNNNNNNNNN .................................... CAACAGCCGTTGTTAAAATTAAAAAAACTA 892188 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 43 36 30 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.70,-2.60] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [78.3-81.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [23,84] Score: 0.18/0.18 # # Final direction: R [0,0.18 Confidence: MEDIUM] >NC_018410 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 863553 36 100.0 30 NNNNNNNNNN .................................... AATCGAATAATTATGTTCAGATGTACTTTG 863619 36 100.0 30 NNNNNNNNNN .................................... GAAACGGCCGCAAGTTACTTACATACAATT 863685 36 100.0 30 NNNNNNNNNN .................................... TTTGCATATTTAGATCGTTACTTTGACAAA 863751 36 100.0 30 NNNNNNNNNN .................................... AATAAATTTAAAATTGCCGATTGTGTTCAA 863817 36 100.0 30 NNNNNNNNNN .................................... TTATAACAGATAATAACACTTGACGCGCTT 863883 36 100.0 30 NNNNNNNNNN .................................... TCAGATAATTCTTCAACTGCAACAACGTTA 863949 36 100.0 30 NNNNNNNNNN .................................... TTTATAACAACAGATTACGCTTTTTTATTC 864015 36 100.0 30 NNNNNNNNNN .................................... TTGGGCTAATTTACCGTATAAACTATTAAG 864081 36 100.0 30 NNNNNNNNNN .................................... AAAGCCCCGAACAACTAGCTTTCGAAAAGA 864147 36 100.0 30 NNNNNNNNNN .................................... ATTCATTAACAAAAAAGATGTTAAATAAAC 864213 36 100.0 30 NNNNNNNNNN .................................... TTTTTTCAAAATTATACAATAACGATTTAA 864279 36 100.0 30 NNNNNNNNNN .................................... CAGATTTTAAGAAAGAACGTTTAATTACAA 864345 36 100.0 30 NNNNNNNNNN .................................... GTAATACTCAAGAACTGCATCGCGCAAGTC 864411 36 100.0 30 NNNNNNNNNN .................................... AAGTAACTTGCAGCCGTTTCATGATCAAGT 864477 36 100.0 30 NNNNNNNNNN .................................... ATCTTGTTATTATTAGCGTTTATTTGGCCA 864543 36 100.0 30 NNNNNNNNNN .................................... TCTTGTGTCTTGAAACTTGCTATAAAAGTA 864609 36 100.0 30 NNNNNNNNNN .................................... TGATTAATAATAAAGTCAATCTTTCACATT 864675 36 100.0 30 NNNNNNNNNN .................................... AAATAAGGGATATCAAACGACATATTATGC 864741 36 100.0 30 NNNNNNNNNN .................................... AAAGTTGTATTGTGTTTGAACCATTTCACT 864807 36 100.0 30 NNNNNNNNNN .................................... AGGTTGTTCATGATTGACATTAAAATTAAA 864873 36 100.0 30 NNNNNNNNNN .................................... ATTCAATTGCGTTTTTTAAACGTACAAATA 864939 36 100.0 30 NNNNNNNNNN .................................... TTTGTTTTTATCTTGATTCGAAAGACATTA 865005 36 100.0 30 NNNNNNNNNN .................................... ATTCTGCCGCCACGATATCGATTTCAGTTC 865071 36 100.0 30 NNNNNNNNNN .................................... ATAAGAACAAGAACTATCTAACGCTTTTTT 865137 36 100.0 30 NNNNNNNNNN .................................... GTAAGTTGTCGATCTCTTCACTAACGACAG 865203 36 100.0 30 NNNNNNNNNN ......A............................. TTGTTGAGCTAATTGGACTTAAAGCAAATA 865269 36 100.0 30 NNNNNNNNNN .................................... TTGAAATTTGAATGTTTGGAAATCTTCACG 865335 36 100.0 31 NNNNNNNNNN .................................... GCAATAGTTTGTAAGCAAAACGTGGGAGGGG 865402 36 100.0 30 NNNNNNNNNN .................................... AATTAAAAGTTAAGAACGTTGTTGCTGACG 865468 36 100.0 30 NNNNNNNNNN .................................... TAGTGTATTTTAACCACCGTTCAAGCGCTC 865534 36 100.0 31 NNNNNNNNNN .................................... TTTTTTGTTAATGAATTAAAAATCTTATCAG 865601 36 100.0 30 NNNNNNNNNN .................................... TTTTTTAAGCTCATCTTCAAGGTGTTGATT 865667 36 100.0 30 NNNNNNNNNN .................................... AACTTATCTGCATAACCCTTTTGAATCTCT 865733 36 100.0 30 NNNNNNNNNN .................................... AAGTTGATCATTTAAATGAGCTTTTAAAAA 865799 36 100.0 30 NNNNNNNNNN .................................... ACGTTTGAGGTTCAGCTAATTCTGGGGTTA 865865 36 100.0 30 NNNNNNNNNN .................................... TTTGATCATCGACTGTTCAAAGAAGGCGTA 865931 36 100.0 30 NNNNNNNNNN .................................... TAGTTAAATTAATTTTTAAAGGATGGTTTA 865997 36 100.0 30 NNNNNNNNNN .................................... TAATAATCTTAATTTTAGTGTGTTTGTCGT 866063 36 100.0 30 NNNNNNNNNN .................................... GAATTAAATTATCTTTATAAGTAAAATAAA 866129 36 100.0 30 NNNNNNNNNN .................................... TAATAATCTTAATTTTAGTGTGTTTGTCGT 866195 36 100.0 30 NNNNNNNNNN .................................... GAATTAAATTATCTTTATAAGTAAAATAAA 866261 36 100.0 30 NNNNNNNNNN .................................... GTTTTGCTTATAAATTGTTACAAGACTTCT 866327 36 100.0 30 NNNNNNNNNN .................................... ATTCTGCCGCCACGATATCGATTTCTGTTC 866393 36 100.0 30 NNNNNNNNNN .................................... ATGGTGACGAATATAAACCCCAACTTGATC 866459 36 100.0 30 NNNNNNNNNN .................................... CAACAGCCGTTGTTAAAATTAAAAAAACTA 866525 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 46 36 30 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.70,-2.60] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [78.3-81.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [23,84] Score: 0.18/0.18 # # Final direction: R [0,0.18 Confidence: MEDIUM] >NC_018411 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 864033 36 100.0 30 NNNNNNNNNN .................................... ATTCTGCCGCCACGATATCGATTTCAGTTC 864099 36 100.0 30 NNNNNNNNNN .................................... ATAAGAACAAGAACTATCTAACGCTTTTTT 864165 36 100.0 30 NNNNNNNNNN .................................... GTAAGTTGTCGATCTCTTCACTAACGACAG 864231 36 100.0 30 NNNNNNNNNN ......A............................. TTGTTGAGCTAATTGGACTTAAAGCAAATA 864297 36 100.0 30 NNNNNNNNNN .................................... TTGAAATTTGAATGTTTGGAAATCTTCACG 864363 36 100.0 31 NNNNNNNNNN .................................... GCAATAGTTTGTAAGCAAAACGTGGGAGGGG 864430 36 100.0 30 NNNNNNNNNN .................................... AATTAAAAGTTAAGAACGTTGTTGCTGACG 864496 36 100.0 30 NNNNNNNNNN .................................... TAGTGTATTTTAACCACCGTTCAAGCGCTC 864562 36 100.0 31 NNNNNNNNNN .................................... TTTTTTGTTAATGAATTAAAAATCTTATCAG 864629 36 100.0 30 NNNNNNNNNN .................................... TTTTTTAAGCTCATCTTCAAGGTGTTGATT 864695 36 100.0 30 NNNNNNNNNN .................................... TTTAAGCGTTCCGATCGTTTGTCAAATGTG 864761 36 100.0 30 NNNNNNNNNN .................................... AACTTATCTGCATAACCCTTTTGAATCTCT 864827 36 100.0 30 NNNNNNNNNN .................................... AAGTTGATCATTTAAATGAGCTTTTAAAAA 864893 36 100.0 30 NNNNNNNNNN .................................... ACGTTTGAGGTTCAGCTAATTCTGGGGTTA 864959 36 100.0 30 NNNNNNNNNN .................................... TAATTAATCGCGATAATACAATGTATTTTG 865025 36 100.0 30 NNNNNNNNNN .................................... TTTGATCATCGACTGTTCAAAGAAGGCGTA 865091 36 100.0 30 NNNNNNNNNN .................................... TAGTTAAATTAATTTTTAAAGGATGGTTTA 865157 36 100.0 30 NNNNNNNNNN .................................... TAATAATCTTAATTTTAGTGTGTTTGTCGT 865223 36 100.0 30 NNNNNNNNNN .................................... GAATTAAATTATCTTTATAAGTAAAATAAA 865289 36 100.0 30 NNNNNNNNNN .................................... GTTTTGCTTATAAATTGTTACAAGACTTCT 865355 36 100.0 30 NNNNNNNNNN .................................... ATTCTGCCGCCACGATATCGATTTCTGTTC 865421 36 100.0 30 NNNNNNNNNN .................................... ATGGTGACGAATATAAACCCCAACTTGATC 865487 36 100.0 30 NNNNNNNNNN .................................... CAACAGCCGTTGTTAAAATTAAAAAAACTA 865553 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 24 36 30 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.70,-2.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [70.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1911,84] Score: 0.18/0.18 # # Final direction: R [0.18,0.68 Confidence: MEDIUM] >NC_018521 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1455124 37 100.0 29 NNNNNNNNNN .A................................... TATGGCAGTTTTTAAAAGAGCTTGGCGGT 1455190 37 100.0 29 NNNNNNNNNN ..................................... TTTCCAAAGTTTCATTAGTTGAATTTAAC 1455256 37 100.0 29 NNNNNNNNNN ..................................... CTACAAGAATGAGGATGATGATATTTTAC 1455322 37 100.0 29 NNNNNNNNNN A.................................... ATGAGTGTGCTAAAAAAAATGGACTTAAA 1455388 37 100.0 1 NNNNNNNNNN ..................................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 5 37 29 TGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:78.38%AT] # Reference repeat match suggestion: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 97% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [56.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [120,146] Score: 0/0.18 # # Final direction: R [0.5,0.68 Confidence: LOW] >NC_018412 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 901243 36 100.0 30 TGACAATGAG .................................... AATCGAATAATTATGTTCAGATGTACTTTG 901309 36 100.0 30 ATGTACTTTG .................................... GAAACGGCCGCAAGTTACTTACATACAATT 901375 36 100.0 30 ACATACAATT .................................... AATAAATTTAAAATTGCCGATTGTGTTCAA 901441 36 100.0 30 TTGTGTTCAA .................................... TTATAACAGATAATAACACTTGACGCGCTT 901507 36 100.0 30 TGACGCGCTT .................................... TTATTTATTAAACGACGAACAAAGACGTTT 901573 36 100.0 30 AAAGACGTTT .................................... TTGGGCTAATTTACCGTATAAACTATTAAG 901639 36 100.0 30 AACTATTAAG .................................... AAAGCCCCGAACAACTAGCTTTCGAAAAGA 901705 36 100.0 30 TTCGAAAAGA .................................... AAAGTTGTATTGTGTTTGAACCATTTCACT 901771 36 100.0 29 CCATTTCACT .................................... ATTTAACAAAGAATGAGATCGAATTGAGT 901836 36 100.0 30 CGAATTGAGT .................................... AGGTTGTTCATGATTGACATTAAAATTAAA 901902 36 100.0 30 TAAAATTAAA .................................... ATTCAATTGCGTTTTTTAAACGTACAAATA 901968 36 100.0 31 CGTACAAATA .................................... GCAATAGTTTGTAAGCAAAACGTGGGAGGGG 902035 36 100.0 30 GTGGGAGGGG .................................... AATTAAAAGTTAAGAACGTTGTTGCTGACG 902101 36 100.0 30 GTTGCTGACG .................................... TAGTGTATTTTAACCACCGTTCAAGCGCTC 902167 36 100.0 31 TCAAGCGCTC .................................... TTTTTTGTTAATGAATTAAAAATCTTATCAG 902234 36 100.0 30 ATCTTATCAG .................................... TTTTTTAAGCTCATCTTCAAGGTGTTGATT 902300 36 100.0 30 GGTGTTGATT .................................... TTTAAGCGTTCCGATCGTTTGTCAAATGTG 902366 36 100.0 30 GTCAAATGTG .................................... AACTTATCTGCATAACCCTTTTGAATCTCT 902432 36 100.0 30 TTGAATCTCT .................................... AAGTTGATCATTTAAATGAGCTTTTAAAAA 902498 36 100.0 30 CTTTTAAAAA .................................... TAGTTAAATTAATTTTTAAAGGATGGTTTA 902564 36 100.0 30 GGATGGTTTA .................................... TAATAATCTTAATTTTAGTGTGTTTGTCGT 902630 36 100.0 30 TGTTTGTCGT .................................... GAATTAAATTATCTTTATAAGTAAAATAAA 902696 36 100.0 30 GTAAAATAAA .................................... TAATAATCTTAATTTTAGTGTGTTTGTCGT 902762 36 100.0 30 TGTTTGTCGT .................................... GAATTAAATTATCTTTATAAGTAAAATAAA 902828 36 100.0 30 GTAAAATAAA .................................... GTTTTGCTTATAAATTGTTACAAGACTTCT 902894 36 100.0 30 CAAGACTTCT .................................... ATTCTGCCGCCACGATATCGATTTCTGTTC 902960 36 100.0 30 ATTTCTGTTC .................................... ATGGTGACGAATATAAACCCCAACTTGATC 903026 36 100.0 30 CAACTTGATC .................................... CAACAGCCGTTGTTAAAATTAAAAAAACTA 903092 36 100.0 AAAAAAACTA .................................... AAAAACAAGT ========== ====== ====== ====== ========== ==================================== 29 36 30 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.70,-2.60] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [78.3-81.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [23,84] Score: 0.18/0.18 # # Final direction: R [0,0.18 Confidence: MEDIUM] >NC_018413 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 851578 36 100.0 30 CAATCCTAAT .................................... AAAGTTGTATTGTGTTTGAACCATTTCACT 851644 36 100.0 29 CCATTTCACT .................................... ATTTAACAAAGAATGAGATCGAATTGAGT 851709 36 100.0 30 CGAATTGAGT .................................... AGGTTGTTCATGATTGACATTAAAATTAAA 851775 36 100.0 30 TAAAATTAAA .................................... ATTCAATTGCGTTTTTTAAACGTACAAATA 851841 36 100.0 30 CGTACAAATA .................................... TTTGTTTTTATCTTGATTCGAAAGACATTA 851907 36 100.0 30 AAAGACATTA .................................... ATTCTGCCGCCACGATATCGATTTCAGTTC 851973 36 100.0 30 ATTTCAGTTC .................................... ATAAGAACAAGAACTATCTAACGCTTTTTT 852039 36 100.0 30 ACGCTTTTTT .................................... GTAAGTTGTCGATCTCTTCACTAACGACAG 852105 36 97.2 30 CTAACGACAG ......A............................. TTGTTGAGCTAATTGGACTTAAAGCAAATA 852171 36 100.0 30 AAAGCAAATA .................................... TTGAAATTTGAATGTTTGGAAATCTTCACG 852237 36 100.0 31 AATCTTCACG .................................... GCAATAGTTTGTAAGCAAAACGTGGGAGGGG 852304 36 100.0 30 GTGGGAGGGG .................................... AATTAAAAGTTAAGAACGTTGTTGCTGACG 852370 36 100.0 30 GTTGCTGACG .................................... TAGTGTATTTTAACCACCGTTCAAGCGCTC 852436 36 100.0 31 TCAAGCGCTC .................................... TTTTTTGTTAATGAATTAAAAATCTTATCAG 852503 36 100.0 30 ATCTTATCAG .................................... TTTTTTAAGCTCATCTTCAAGGTGTTGATT 852569 36 100.0 30 GGTGTTGATT .................................... TTTAAGCGTTCCGATCGTTTGTCAAATGTG 852635 36 100.0 30 GTCAAATGTG .................................... AACTTATCTGCATAACCCTTTTGAATCTCT 852701 36 100.0 30 TTGAATCTCT .................................... AAGTTGATCATTTAAATGAGCTTTTAAAAA 852767 36 100.0 30 CTTTTAAAAA .................................... ACGTTTGAGGTTCAGCTAATTCTGGGGTTA 852833 36 100.0 30 TCTGGGGTTA .................................... TAATTAATCGCGATAATACAATGTATTTTG 852899 36 100.0 30 ATGTATTTTG .................................... TTTGATCATCGACTGTTCAAAGAAGGCGTA 852965 36 100.0 30 AGAAGGCGTA .................................... TAGTTAAATTAATTTTTAAAGGATGGTTTA 853031 36 100.0 30 GGATGGTTTA .................................... TAATAATCTTAATTTTAGTGTGTTTGTCGT 853097 36 100.0 30 TGTTTGTCGT .................................... GAATTAAATTATCTTTATAAGTAAAATAAA 853163 36 100.0 30 GTAAAATAAA .................................... GTTTTGCTTATAAATTGTTACAAGACTTCT 853229 36 100.0 30 CAAGACTTCT .................................... ATGGTGACGAATATAAACCCCAACTTGATC 853295 36 100.0 30 CAACTTGATC .................................... CAACAGCCGTTGTTAAAATTAAAAAAACTA 853361 36 100.0 AAAAAAACTA .................................... AAAAACAAG ========== ====== ====== ====== ========== ==================================== 28 36 30 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.70,-2.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [70.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1911,84] Score: 0.18/0.18 # # Final direction: R [0.18,0.68 Confidence: MEDIUM] >NC_018503 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 5466 29 100.0 31 NNNNNNNNNN ............................. GACTAAACCAGAGACTAAACCAGAGACTAAA 5526 29 100.0 19 NNNNNNNNNN ............................. GACTAAGCCAGAAACTAAG 5574 29 100.0 19 NNNNNNNNNN ............................. AACTAAGCCAGAAACTAAG 5622 29 100.0 1 NNNNNNNNNN .................A.....G..... NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 4 29 23 CCAGAAACTAAACCAGAGACTAAACCAGA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.62%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [696,610] Score: 0/0.18 # # Final direction: F [0.68,0 Confidence: HIGH] >NC_018501 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================== ====== 45304 21 100.0 44 NNNNNNNNNN ..................... TTATAGTATCAACGGCATCCTTAATTCCTTTTGTGTTTAAACCA 45369 21 100.0 45 NNNNNNNNNN ..................... TATATCGCTCGTCATGTTGCTCAGTTTCCGTTATAGTTTAAACAT 45435 21 100.0 1 NNNNNNNNNN ..................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================== 3 21 44 AACAATAGATGTATTGAAATT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:80.95%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [278,688] Score: 0.18/0.18 # # Final direction: F [4.5,0.18 Confidence: HIGH] >NC_018501 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 45778 19 100.0 48 NNNNNNNNNN ................... AGGCGTCATAGCGCCAGTGGTAACAGCTCATTTTGTTGTTTAAACCAC 45845 19 100.0 45 NNNNNNNNNN ................... AATCACTTGTTATAACTGTCTCTTCATACAAATAGTTTAAACATA 45909 19 100.0 46 NNNNNNNNNN ................... TCTTACGCCAAGTCGATAGACCGAAAAGCAGGGTTGTTTAAACCAA 45974 19 100.0 1 NNNNNNNNNN ........A..T.A.G... NNNNNNNNNN ========== ====== ====== ====== ========== =================== 4 19 46 ACAATAGATGTATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:78.95%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [752,151] Score: 0.18/0.18 # # Final direction: F [5.09,0 Confidence: HIGH] >NC_018500 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================== ====== 2170798 18 100.0 63 CTCCTTCAGG .................. GCCTGTAATTCCTTGAGGACCTTGTTCTCCTTCAGGTCCAGTTGGGCCAATGAGTCCTGTAAT 2170879 18 94.4 48 GTCCTGTAAT A................. TCCAAACTCTCCAGTTGGGCCAGTCGGCCCCAATGGACCTCCATTATC 2170945 18 100.0 CTCCATTATC .................. CCCGACTGTAGTAG ========== ====== ====== ====== ========== ================== 3 18 55 TCCAGTTGGGCCTGTGGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [2473,928] Score: 0.18/0.18 # # Final direction: F [0.59,0.37 Confidence: LOW] >NC_018508 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3223190 29 100.0 97 NNNNNNNNNN ......T....G..G.C............ AGGCGCTACCGGCAATACAGGCGCTCAAGGACCTGCGGGTGCTACCGGTGCTACCGGACCTCAGGGGCCTCAAGGTAACACAGGCGCTACCGGTGCT 3223316 29 100.0 106 NNNNNNNNNN ...............G............. AGGTGCTACGGGTGCCACTGGACCTCAAGGTGTTCAAGGTAACACAGGTGCTACTGGACCTCAAGGCGTTCAAGGTAACACGGGTGCTACCGGCGCTACTGGTGCT 3223451 29 100.0 97 NNNNNNNNNN ...............G............. GGGTGCTACTGGCGCTACTGGACCTCAAGGTGTTCAAGGTAACACGGGTGCCACTGGACCTCAAGGCGTTCAAGGTAACACGGGTGCTACCGGCGCC 3223577 29 100.0 88 NNNNNNNNNN ...............G............. AGGTGCTACGGGTGCTACTGGACCTCAAGGTGTTCAAGGTAACACAGGTGCTACTGGACCTCAAGGTCTTCAAGGTAACACGGGTGCC 3223694 29 100.0 61 NNNNNNNNNN ..............CG............. GGGTGCTACTGGCGCTACTGGACCTCAAGGTGTTCAAGGTAACACAGGTGCTACTGGCGCT 3223784 29 100.0 61 NNNNNNNNNN ...............G............. AGGTGCTACTGGCGCTACTGGACCTCAAGGTCTTCAAGGTAACACAGGTGCTACTGGCGCT 3223874 29 100.0 52 NNNNNNNNNN ............................. GGGTGCCACTGGACCTCAAGGTCTTCAAGGTAACACAGGTGCTACTGGTGCT 3223955 29 100.0 52 NNNNNNNNNN ..............CG............. GGGTGCTACCGGCGCCACTGGACCTCAAGGTCTTCAAGGTAACACAGGTGCT 3224036 29 100.0 52 NNNNNNNNNN ............................. AGGTGCTACTGGCGCTACTGGACCTCAAGGTCTTCAAGGTAACACGGGTGCC 3224117 29 100.0 52 NNNNNNNNNN ............................. GGGTGCTACTGGACCTCAAGGCGTTCAAGGTAACACGGGTGCTACTGGCGCT 3224198 29 100.0 52 NNNNNNNNNN ............................. AGGTGCTACTGGCGCTACTGGACCTCAAGGTCTTCAAGGTAACACGGGTGCC 3224279 29 100.0 25 NNNNNNNNNN ............................. AGGTGCTACTGGTGCTACTGGTGCT 3224333 29 100.0 34 NNNNNNNNNN ..............CG............. GGGTGCTACCGGCGCTACTGGTGCTACGGGTGCT 3224396 29 100.0 43 NNNNNNNNNN ............................. GGGTGCCACTGGACCTCAAGGCGTTCAAGGTAACACGGGTGCT 3224468 29 100.0 1 NNNNNNNNNN ..............CG............. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 15 29 62 ACTGGACCTCAAGGTCTTCAAGGTAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:51.72%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.30,-4.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [6-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [35.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [907,823] Score: 0/0.18 # # Final direction: R [0,1.05 Confidence: HIGH] >NC_018522 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2319792 28 96.4 32 ATATGCTGGT .............A.............. CGGCTCTTTTTATCTCCTTCATCCTTCGCTAT 2319852 28 78.6 38 CCTTCGCTAT ......................------ GTTTCTGATCGGCGTGCCGTTTGTTGGACCCGAAATAG 2319918 28 100.0 33 CCCGAAATAG ............................ CGTCATCAGCGCCTTGTTCCAGCGGCGACCACC 2319979 28 100.0 33 GGCGACCACC ............................ TATCGTGCAGAGTCACAACCTGACGGGATTATC 2320040 28 100.0 33 CGGGATTATC ............................ TCGTGCATGGTGAGGATTCTACAGTCGCACCAT 2320101 28 100.0 GTCGCACCAT ............................ TACCTCCCGGCGTCCGCGCCAGGGCGATCACGTGTCTTC ========== ====== ====== ====== ========== ============================ 6 28 33 GTCTTCCCCACACGCGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-10.90] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [56.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [254,812] Score: 0.18/0.18 # # Final direction: R [0.27,0.96 Confidence: MEDIUM] >NC_018522 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2329062 28 100.0 33 ATATGTTGGT ............................ CGCGACGACCTCGTCATCCTCCCCGCTGCGGCT 2329123 28 100.0 33 CGCTGCGGCT ............................ TACACCCAGCTCTTTGACGCAAAGGCTCAGGAG 2329184 28 100.0 33 GGCTCAGGAG ............................ TCCTTGGTTCGTTTCTTCTGATGTTTGCAAGGC 2329245 28 100.0 33 TTTGCAAGGC ............................ CTGGTTGACGTATGCCGTGATGCTGCTGGTAGG 2329306 28 100.0 33 TGCTGGTAGG ............................ CGCTGTATGCCCCCCATCCTTCGCAAGCACTAC 2329367 28 100.0 33 CAAGCACTAC ............................ CGATGACAACTTTGCCTACTTCGCTGCGCTGGC 2329428 28 100.0 33 CTGCGCTGGC ............................ TTCCTCTTCTTCCTGACAATCAGCGCAGCGCTG 2329489 28 100.0 33 CGCAGCGCTG ............................ TGCGGGTGGATGACAATAACGCCTGGCGCGCCG 2329550 28 100.0 33 TGGCGCGCCG ............................ CCTGTTAAGGATGACGCGGGGAAATGGGTTATC 2329611 28 100.0 33 ATGGGTTATC ............................ TCGATGGCGAGCTGCTGGTGAAAAAGTCGATAC 2329672 28 100.0 33 AAGTCGATAC ............................ TCCAGGCCAGATCTGTTTGGGTTGGTGTCGAAG 2329733 28 100.0 33 GGTGTCGAAG ............................ TGAAGGTGAGCGCCAAAAGGAGTGGAAGCATGC 2329794 28 100.0 33 GGAAGCATGC ............................ CGGCTGCGTTATCCGGCAGCACGAACTGGACCT 2329855 28 100.0 33 AACTGGACCT ............................ TGACCTTAGAGGCTTCACTCAGTGCCACTTTTT 2329916 28 100.0 GCCACTTTTT ............................ TTGTGAGGGG ========== ====== ====== ====== ========== ============================ 15 28 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-10.90] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [49,306] Score: 0.18/0.18 # # Final direction: R [0.27,0.55 Confidence: MEDIUM] >NC_018524 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1460037 29 96.6 32 ACAGGAGCGA -............................ ACCGGGTGGCATCGCACGGCCGCTCAGGTCGT 1460098 29 100.0 32 CTCAGGTCGT ............................. GGTCGATTCGTCTGACCTGTGACGAGGCCCGG 1460159 29 100.0 32 CGAGGCCCGG ............................. ACGATCAGGCCCTTTCAGGGTTCGGGTCGGTG 1460220 29 100.0 32 CGGGTCGGTG ............................. AGGTCCCGCAGGTGACCGGTTGTGACTGCCGT 1460281 29 100.0 32 TGACTGCCGT ............................. TGCGGAGCGGTCTCACGGATGTAGTCCATGAA 1460342 29 100.0 32 AGTCCATGAA ............................. CTCACCACTCGCGGTAAGCCGGTCCGGGTGCC 1460403 29 100.0 33 TCCGGGTGCC ............................. GCACAGGCCGATTCCGGCGTTCGCCGAGTTCTG 1460465 29 100.0 32 CCGAGTTCTG ............................. CGGTGGTAGTCGACCACCTGCGCCGTAGACGC 1460526 29 100.0 32 CCGTAGACGC ............................. CTACCGCGGGTGATCAAGGACAAGATCGTGGA 1460587 29 100.0 32 AGATCGTGGA ............................. GGAACGGGTGGAACCCCCACCGGAACCCCGGG 1460648 29 100.0 GAACCCCGGG ............................. TCTTTCTGAC ========== ====== ====== ====== ========== ============================= 11 29 32 GGGTCCATCCCCGCGTGCGCGGGGAGCAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [3,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [43.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [84,124] Score: 0/0.18 # # Final direction: R [0,0.68 Confidence: HIGH] >NC_018524 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2268230 29 100.0 33 GTCATTAAGT ............................. GATGGGAGTACCTCCTCCAGGGACGCGCCTGGC 2268292 29 96.6 32 CGCGCCTGGC ............................C CCGATTCGCCGCCGTGGCCGCCACACTCACCG 2268353 29 100.0 32 ACACTCACCG ............................. GCGCACCCGGACCTCACCAAGGAGTTCACCCG 2268414 29 100.0 32 AGTTCACCCG ............................. GACTATGGTCCCATTCAGGCCGCTCGGGCCAC 2268475 29 100.0 32 CTCGGGCCAC ............................. AGGTCTCTTCATTCAACGTTCGCGTAGTGCCC 2268536 29 100.0 32 CGTAGTGCCC ............................. AACACCGGTCTCGCGACCGGAGACGAGGTCAT 2268597 29 93.1 ACGAGGTCAT C..C......................... GTCGAGACGGT ========== ====== ====== ====== ========== ============================= 7 29 32 GTGAACCCCACGCACGTGGGGATGGACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [135,134] Score: 0/0.18 # # Final direction: F [1.05,0 Confidence: HIGH] >NC_018524 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 311597 29 100.0 32 TCCGGCGAGC ............................. AGCACCAACAGCAGCGCGGTCCACCCGTCCCG 311658 29 100.0 32 ACCCGTCCCG ............................. CCGGTTGATCTCGTCGAATACGGCTGCGAGGT 311719 29 100.0 32 GCTGCGAGGT ............................. GTGCCGCTGGCCATCTCCATCGTCGGCTCCTA 311780 29 100.0 32 TCGGCTCCTA ............................. CGTTCATCCGGGCGGGTCTGTTCTGGGTGAGC 311841 29 100.0 32 CTGGGTGAGC ............................. AAGCCACAAAGCCAGCTCCGTACATGCGTCAG 311902 29 100.0 32 CATGCGTCAG ............................. ACCATCATGTCGCCGAACGCGGAGCCGGCCCA 311963 29 100.0 32 AGCCGGCCCA ............................. TTCTTCATCCAGGGGGCGCGGGAGACGATCTC 312024 29 100.0 32 AGACGATCTC ............................. TCTGGTCGGGAGAGCCGAAGTAGTCGGGTTCG 312085 29 100.0 37 GTCGGGTTCG ............................. TATGACGAGGCGTGCCGTCGCGCGGGCCGGACCTTGG 312151 29 100.0 32 CGGACCTTGG ............................. TAGGCGGCCTCGGCGGTAAAGGCGGGGGCGTC 312212 29 100.0 32 CGGGGGCGTC ............................. ACGGCTGTAGGTGCCTCCGGGGCCGGTGTCGT 312273 29 100.0 32 CCGGTGTCGT ............................. TAAATGATCTTGTCACTTTTGGTGTCACGCGC 312334 29 100.0 32 TGTCACGCGC ............................. TCCTCCGGCGCCTCGTCGGCGACGTCGGCGAC 312395 29 100.0 32 CGTCGGCGAC ............................. TCGACGAGGTACGCATTCAGGAGCCGGAGCGA 312456 29 100.0 GCCGGAGCGA ............................. GCTTAATGA ========== ====== ====== ====== ========== ============================= 15 29 32 CGGTCCATCCCCACGTGCGTGGGGCTCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [30.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [303,365] Score: 0/0.18 # # Final direction: R [0,0.64 Confidence: HIGH] >NC_018524 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 313309 31 93.5 30 CTGACTAGGA -.............................G AGGAGTACTGCCCGTTCCTGGTGAGGGTGA 313370 31 100.0 30 GTGAGGGTGA ............................... ACACCACCCCGGCCTGGCCACGGCCGGCGT 313431 31 100.0 CGGCCGGCGT ............................... TTCCTGACCT ========== ====== ====== ====== ========== =============================== 3 31 30 CGGGTCCATCCCCGCGTGCGCGGGGAGCAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [3,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-14.30,-14.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [17,108] Score: 0.18/0.18 # # Final direction: R [0.37,0.86 Confidence: MEDIUM] >NC_018524 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 321342 28 96.4 33 CGTGTGTCAG ..A......................... ACCGTGTAGACCGGGGAGGCCAACCGGATCCGG 321403 28 100.0 33 CCGGATCCGG ............................ GGAGTCCTGGGCGAGGGTGTACATCATTTCGTG 321464 28 100.0 33 TCATTTCGTG ............................ CGCGGACCGACCTACTCCGACATCGATGACCTG 321525 28 100.0 33 CGATGACCTG ............................ TGGGCCCGGTCCTGAGCGTAGGCCGCTCGGGTG 321586 28 100.0 33 CGCTCGGGTG ............................ TTCGGGACTTCCGAACTTCCGGAGTTGGGAGTG 321647 28 96.4 33 GTTGGGAGTG .................A.......... CGCAGGTGGGACAGGGCGCACAAGGCCGGATGG 321708 28 96.4 33 GGCCGGATGG .................A.......... TTGTTCGCCGCCGAGGCCACGGCATCCGCCAAA 321769 28 96.4 33 ATCCGCCAAA .................A.......... GAACTTGGTGGTGTTGATGACCACGGTGTTTCC 321830 28 96.4 CGGTGTTTCC .................A.......... GGGGTGCGGCC ========== ====== ====== ====== ========== ============================ 9 28 33 GGTCCATCCCCGCGTGCGCGGGGAGCAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [3,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [36.7-18.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [63,517] Score: 0.18/0.18 # # Final direction: R [0.27,0.59 Confidence: MEDIUM] >NC_018524 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 318671 29 100.0 32 CGGCCGGGCA ............................. CGGATCAAGTTCTGGGGCGGGATGGTCCCGTT 318732 29 100.0 32 TGGTCCCGTT ............................. ATGACCGCCCATTTCGCCGACCGGCTCGCCGC 318793 29 100.0 32 GGCTCGCCGC ............................. TATTTCTCGTGCTTTCCAGCCACCGGCCTGGA 318854 29 100.0 32 CCGGCCTGGA ............................. GACCCTGCCCCTCCGCGCCGCCCTTCATCAGG 318915 29 100.0 32 CTTCATCAGG ............................. GGCTGTGGAGCGCGCGGCGGCTGCGCGGGGTG 318976 29 100.0 32 GCGCGGGGTG ............................. CAGAGAGAGCTGGTCCGCGCACAGGGCGCAGC 319037 29 100.0 31 AGGGCGCAGC ............................. ATCGGTTGACATCCGGGGGGTCTCCCTCATA 319097 29 100.0 32 CTCCCTCATA ............................. CGCACATTCCTCTAGCCCCATTTCAACCGCGA 319158 29 100.0 32 TCAACCGCGA ............................. TGGGGTGGCCACCGGGACCCCCTCCTGGCCGT 319219 29 100.0 32 TCCTGGCCGT ............................. GCTAGGCAGGGAGATCTCGATGCCGCTGTCGG 319280 29 100.0 CCGCTGTCGG ............................. TCTGACCTGC ========== ====== ====== ====== ========== ============================= 11 29 31 GGGGTCATCCCCGCGTGCGCGGGGAGCAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [3,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [30.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [196,141] Score: 0/0.18 # # Final direction: R [0,0.27 Confidence: MEDIUM] >NC_018524 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================= ====== 321971 33 100.0 28 CCTACACCAC ................................. TCGGCGATTTTCCGTGGCTGGATCAAGC 322032 33 90.9 28 TGGATCAAGC .TC.............................C AGATGTTGGACCCAGGATGCGATTTTCA 322093 33 100.0 GCGATTTTCA ................................. CCTGACCTGC ========== ====== ====== ====== ========== ================================= 3 33 28 GATGGGTCCATCCCCGCGTGCACGGGGAGCAGT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [5,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-10.70,-11.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [692,249] Score: 0.18/0.18 # # Final direction: F [0.59,0.37 Confidence: LOW] >NC_018524 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 326565 29 96.6 32 AGGCGGCGAG -............................ CCACAAGGCCCCGCCCCCGAAAGGGGCGGGGC 326626 29 100.0 32 GGGGCGGGGC ............................. ATGAGGACACCGACCGAGAGGCCGTCGCACTG 326687 29 100.0 32 CGTCGCACTG ............................. CAAAGGAGTTCACCGGCGGGCACCGGATGGAC 326748 29 100.0 32 CCGGATGGAC ............................. GACAAGCTGTTCAACGCGCGCGAACTCGCCGC 326809 29 100.0 32 AACTCGCCGC ............................. CCGAGGGCGACGCAGGCACGACGCCAGGTCCA 326870 29 100.0 GCCAGGTCCA ............................. GGAAAACGACC ========== ====== ====== ====== ========== ============================= 6 29 32 CGGCCCATCCCCACGTGCATGGGGCTCAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [4,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.70,-9.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [28.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [89,266] Score: 0.18/0.18 # # Final direction: R [0,1.23 Confidence: HIGH] >NC_018524 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 4582146 29 100.0 32 NNNNNNNNNN ............................. ACTAAGAGCATTTGGAATGTCCCTGGATTCGG 4582207 29 100.0 32 NNNNNNNNNN ............................. ACACGGTGACTGGGCAGGGCTCTGCCCTGGTC 4582268 29 100.0 32 NNNNNNNNNN ............................. GTGACGGTGTGTAACGTCCACTCCGTCCAGTC 4582329 29 100.0 32 NNNNNNNNNN ............................T CCACGTGCGGTGGCCAGCTCCTCCCAGTTCGA 4582390 29 100.0 32 NNNNNNNNNN ............................T CTGTGGGCTTGACCAGCAGGCCCTTGAAGATC 4582451 29 100.0 32 NNNNNNNNNN ............................. AACTTCTCCAGCTCCTTGTGAGCGCTCTCCCG 4582512 29 100.0 32 NNNNNNNNNN ............................T GTCGAGTGCCGTGGCCTCACGGTCGTCGGCGA 4582573 29 100.0 32 NNNNNNNNNN ............................. GTGCTTGGACACCTTCATGGCCTTCCGGGCGA 4582634 29 100.0 32 NNNNNNNNNN ............................. GGCTCGTCGACACACGTCAGCAGGGCAGCACG 4582695 29 100.0 32 NNNNNNNNNN ............................. GTGGCGTTCTTGGTTTCTCTGAGCAACACCAC 4582756 29 100.0 32 NNNNNNNNNN ............................. GTGCTTGCCTGGACGCACCCTCGCCTCCGAGC 4582817 29 100.0 32 NNNNNNNNNN ............................. GAACGACGGCCGGGTCGTCGTGGTCCTGGCCG 4582878 29 100.0 32 NNNNNNNNNN ............................. CAGGGGCAGTACGAGGAACTGACCCGCATCAT 4582939 29 100.0 32 NNNNNNNNNN ............................. CCTTGTGCCAGGTCGCGGCGGTGGTGAGTGAC 4583000 29 100.0 31 NNNNNNNNNN ...........A................. ACCGATTTACCGGCCCCGAACCCATCGACAA 4583060 29 100.0 32 NNNNNNNNNN ..........G..G............... GACTGACCGTGATCCAGTTCGGGATCCGGGTC 4583121 29 100.0 1 NNNNNNNNNN .......................T.G..C NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 17 29 31 CTGAGCCCCACGCACGTGGGGATGGACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [435,82] Score: 0.18/0.18 # # Final direction: F [1.23,0 Confidence: HIGH] >NC_018524 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 4591563 29 100.0 40 GTCAGGAAGA ............................. ATCTTGATGGGCGTCGCGTGCCGGTCGGCGTCAGCGATCC 4591632 29 100.0 33 TCAGCGATCC ............................. ATCGCCGACCAGAACCTCAAGTACACCGGAGTC 4591694 29 100.0 33 CACCGGAGTC ............................. CGTTTCCCTAGGGGTCTAGGGAAATAACTTGGG 4591756 29 100.0 33 ATAACTTGGG ............................. CCCCGAAAAGGGGGTGCTGGAATTTCCCTCTCG 4591818 29 100.0 32 TTCCCTCTCG ............................. ACCGACTTGCCGGTGAACGCCCCGTCGGGGCC 4591879 29 100.0 32 CGTCGGGGCC ............................. CGGGAAATAACGGTGATCTTCGACGAGTACTC 4591940 29 100.0 32 ACGAGTACTC ............................. GCGTAGGTGGTCAGCTCTGCGTCGGGGTCGGC 4592001 29 100.0 32 CGGGGTCGGC ............................. ACAAAGGCCTCCCCCAGCTTCTTGATCTGTCG 4592062 29 100.0 32 TGATCTGTCG ............................. GCTCGTCGAAGGCGGGGTTCGCGCCAACGACC 4592123 29 100.0 GCCAACGACC ............................. GTCGACGAGG ========== ====== ====== ====== ========== ============================= 10 29 33 CTGCTCCCCGCGCACGCGGGGATGACCCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [3,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [43.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [406,75] Score: 0.18/0.18 # # Final direction: F [0.45,0 Confidence: MEDIUM] >NC_018524 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 4595354 24 100.0 37 GTCAGGAAGA ........................ GACCCCGCCGTGTGTGGGCCGCGCTCGGCCCGATCCG 4595415 24 100.0 36 GCCCGATCCG ........................ ACCCCCCCACGACGAGCGAAGTCCCCGTGCAGGTGC 4595475 24 100.0 37 GTGCAGGTGC ........................ ACCCCGCTACGCGGAACCTCGCGCACATCTGATGTGT 4595536 24 100.0 37 TCTGATGTGT ........................ GACCCGTCGCCAAGCTGGATGCCAGCCGCCACGCGGT 4595597 24 95.8 GCCACGCGGT ............T........... GGCCGTAATTC ========== ====== ====== ====== ========== ======================== 5 24 36 CTGCTCCCCGCGCACGCGGGGATG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-5.80,-6.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [307,156] Score: 0/0.18 # # Final direction: F [0.68,0.37 Confidence: LOW] >NC_018525 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 419148 29 100.0 32 TGCGTTTCAG ............................. GAACGGGGAAAAATTTCCGCGATGCTGACTAT 419209 29 100.0 32 TGCTGACTAT ............................. AAACGCAGCTGCGTGCCGCGTTGCTGGAATCA 419270 29 100.0 32 GCTGGAATCA ............................. AACGAGCAACGGCGTGAGATTATCAACCGTTA 419331 29 100.0 32 TCAACCGTTA ............................. TTTACGAAAGAGCAGCAGGCGTTAATCCTTAA 419392 29 100.0 32 TAATCCTTAA ............................. AAACCGACTGGGAATCAATAGAGCGTGATTAC 419453 29 96.6 32 GCGTGATTAC ....A........................ GGGCTAACGGATTCTTTTGGGGCTGCTCCTGT 419514 29 100.0 32 CTGCTCCTGT ............................. CAATCGGATTCAATGCAGAGCAGGCGGCGGTC 419575 29 100.0 39 GGCGGCGGTC ............................. AGGCTTACGAGGCGGCAGGCGGGGCAATCCGCAACGACC 419643 29 100.0 32 CGCAACGACC ............................. CGACAGCCAGCGCATCAACTTCTTACCTGAAC 419704 29 100.0 32 TTACCTGAAC ............................. TGGCGTCAATGGTGTTTGGTGTTGCGATTGCA 419765 29 100.0 TGCGATTGCA ............................. TGAGTGCTGCTGATAAAGGTGCAGCTGCTGCCGTGTTC ========== ====== ====== ====== ========== ============================= 11 29 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-13.40,-12.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [148,1327] Score: 0.18/0.18 # # Final direction: F [1.24,0.18 Confidence: HIGH] >NC_018525 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =========================== ====== 420056 27 96.3 34 ATTTGGCTGA .........A................. CATATTGGAAGCCATTGGCGCTTATAACGCTGGT 420117 27 100.0 34 TAACGCTGGT ........................... TTATTGGCGAAATCGTTCCGGGCCTTTGCTTCGT 420178 27 100.0 34 TTTGCTTCGT ........................... TTATTGGCGAAATCGTTCCGGGCCTTTGCTTCGT 420239 27 100.0 34 TTTGCTTCGT ........................... AGCGTTCCCGATACGCCACCGAATACGTCATTGA 420300 27 96.3 34 ACGTCATTGA .........A................. CCCGACAGCAGGAGCAACACAAAGAAACCTATGT 420361 27 100.0 35 AAACCTATGT ........................... GACTGCCAGTCTGACGATCCTCCGAGCCCAGCAGT 420423 27 100.0 GCCCAGCAGT ........................... TGCGGCGTGA ========== ====== ====== ====== ========== =========================== 7 27 34 GTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,3] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-6.80,-5.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [112,671] Score: 0.18/0.18 # # Final direction: F [1.51,0.59 Confidence: MEDIUM] >NC_018524 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 4598543 29 100.0 32 NNNNNNNNNN ............................. CGTAGGTGAGGCGTCCGGCCGTCGGGCGCCTC 4598604 29 100.0 32 NNNNNNNNNN ............................. TTGTTCGCCTGCTCGGCGGTGAGCTTCACGAC 4598665 29 100.0 32 NNNNNNNNNN ............................. CGACAGAAACGACAGGAACCAGATGAACCCTC 4598726 29 100.0 32 NNNNNNNNNN ............................. GACCCCGCGTTCACCGATGCCGTGACCGATTG 4598787 29 100.0 32 NNNNNNNNNN ............................T CGGTAGTGTCCGCCGTCTCCCGGGGGGTGGCT 4598848 29 100.0 32 NNNNNNNNNN ............................. CACCAGACGCCGTGCTCGTCCGGCTGGCCGAA 4598909 29 100.0 32 NNNNNNNNNN ........................GA... GGCGGCAGGCCGGTACGGTGCCGCCATGGATC 4598970 29 100.0 32 NNNNNNNNNN ........................GA... CGCGTTCGCGGCTGGACACGCTCACGATCATC 4599031 29 100.0 32 NNNNNNNNNN ........................GA... CAGGCCCTGGAGGACAGCCGGTCCGCCCGCGC 4599092 29 100.0 32 NNNNNNNNNN ........................GA... AAGCCCTACAAGCTCTCGGTGTCATGGCTGCC 4599153 29 100.0 32 NNNNNNNNNN ........................GA... ACGGAGCTCGTCGAGCTCGACATCGCGGGCTC 4599214 29 100.0 32 NNNNNNNNNN ............................G ACCTCGAACTCGCGGCGCTCGCGGCCGTCACG 4599275 29 100.0 33 NNNNNNNNNN ............................. GACCTCACCAGGAAGGACCACCACTGATGAGCC 4599337 29 100.0 32 NNNNNNNNNN ............................. TGGGGTGAGATCCTCCCGTCCTAGTCAGGATG 4599398 29 100.0 32 NNNNNNNNNN ............................. CTCAGAGCAGCGGTACCAAACCTGAGCACCGA 4599459 29 100.0 55 NNNNNNNNNN ............................. GCCCGTCCGGTCAGGGCGCTCCTTCCGCACGGGGCACCGGCCCGTGACCATCAAA 4599543 29 100.0 32 NNNNNNNNNN ............................G TGGAGCGTCCGGTGCGGGGGTCTACGCGACGC 4599604 29 100.0 1 NNNNNNNNNN ........................GA.TG NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 18 29 33 CTGCTCCCCGCGCACGCGGGGATGACCCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [3,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [45.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [322,178] Score: 0/0.18 # # Final direction: F [0.68,0 Confidence: HIGH] >NC_018524 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 4608629 29 100.0 32 GTCATCAAGC ............................. CCACCGCCCGGGAGGCCGCCCACCGGGCCGCA 4608690 29 100.0 33 CCGGGCCGCA ............................. GGTCGTAGCCTACCGACGCTGCCGAGCCCCGGA 4608752 29 100.0 32 GAGCCCCGGA ............................. TCGGGCTGAGCGAGCTCTTCCGTTGGAGTGAA 4608813 29 100.0 TTGGAGTGAA ............................. CCGGAACCGGCACGAGCACCTGCTCCGGTTCC ========== ====== ====== ====== ========== ============================= 4 29 32 GTGAGCCCCACGCACGTGGGGATGGACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [38.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [210,167] Score: 0/0.18 # # Final direction: F [0.64,0 Confidence: HIGH] >NC_018524 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 4637701 29 96.6 32 GGTCATTAAG ....................T........ CTCCTCTTCCGAGTAGGCGGGCCAATTCGCGC 4637762 29 100.0 32 CAATTCGCGC ............................. GAGGGCAGTCGATGATGATCTCGTCGAACTCT 4637823 29 100.0 32 GTCGAACTCT ............................. CCTCGGGGCCGGCGGTGATCGCCCCGGCCCGC 4637884 29 100.0 32 CCCGGCCCGC ............................. CCCGGGACGTGGCGCACGTGGTAGCTAATCTG 4637945 29 96.6 32 AGCTAATCTG .....................G....... TCGTGGTACATCAGCTCCCCGCTCACCTCCAG 4638006 29 96.6 32 TCACCTCCAG ........................A.... CAACGTGCTGTTGTAGTTCAGCTCGGCGTTGA 4638067 29 100.0 TCGGCGTTGA ............................. GTCACACCGATGTTCTCTCGGCCGGCCTGGTAG ========== ====== ====== ====== ========== ============================= 7 29 32 CTGAGCCCCACGCACGTGGGGATGGACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [324,89] Score: 0.18/0.18 # # Final direction: F [0.82,0 Confidence: HIGH] >NC_018524 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 4641884 29 100.0 32 GTCATCAAGC ............................. GGCTCGTCCGGATCGAGAGGGGGACCGGCACC 4641945 29 100.0 32 GACCGGCACC ............................. GAGAAACACTATGGTTTCCAACCCGTTCGGAG 4642006 29 100.0 32 CCGTTCGGAG ............................. CCGTCCCCGCGTGGCAGAACGGCGAACTGATC 4642067 29 100.0 32 CGAACTGATC ............................. CGGATCGCGTAGGTGTTGCGAGCCTTCATCCC 4642128 29 96.6 32 CCTTCATCCC ..........T.................. AAGACCACCGAGAAGGGGTAGTGGCACGAGTA 4642189 29 93.1 GGCACGAGTA ..............T.............A AACCCGCAC ========== ====== ====== ====== ========== ============================= 6 29 32 GTGAGCCCCACGCACGTGGGGATGGACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [45.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [224,32] Score: 0.18/0.18 # # Final direction: F [1.23,0 Confidence: HIGH] >NC_018524 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 4652533 28 100.0 33 NNNNNNNNNN ............................ CTCTGGACGATCGACCAGGTCACCGAGTTCCTG 4652594 28 100.0 33 NNNNNNNNNN ............................ GTTCGAGTTCCAGACCAAGGAGCTCATCGCCGC 4652655 28 100.0 33 NNNNNNNNNN ............................ GCGCTGGAGGACTGGTGCCGCTACCGCCTAGAC 4652716 28 100.0 33 NNNNNNNNNN ............................ GCTCATCGCTGCCATCTTCGGGTCGGTGAGTGG 4652777 28 100.0 33 NNNNNNNNNN ............................ TCACGAACTACGCCCACGGAACGATGCAGGACT 4652838 28 100.0 32 NNNNNNNNNN ............................ TCCGCGGTAGGTGTTTTCGAACCCGTGGGGGG 4652898 28 100.0 33 NNNNNNNNNN ............................ GGAGGAGCCTCGGTTTCGGGCCGGTCAGGCCCT 4652959 28 100.0 33 NNNNNNNNNN ............................ GCAGATCATCCACGCCCTGGACGAGGCCCCCTC 4653020 28 100.0 33 NNNNNNNNNN ............................ GAACACGAAGAACCCGCCGCTGGTCGTTGACCA 4653081 28 100.0 33 NNNNNNNNNN ............................ GGGCTTCCAGCTCTCCCGCGAACAACTCGGTGC 4653142 28 100.0 33 NNNNNNNNNN ............................ GTCCAGGCCGCTGGCCGGCCGGTGGCTCTGCCG 4653203 28 100.0 33 NNNNNNNNNN ....A....................... GCCGCTCCGCTGCACGCAGGGTACGGTCCGGCC 4653264 28 100.0 33 NNNNNNNNNN ...........A................ GTTTCGGTGGGTGACGTGCACGGCCTCGACGTT 4653325 28 100.0 33 NNNNNNNNNN ...........A................ GAACGCGGCACGCCGGTACACCAAGGCTCGCGC 4653386 28 100.0 33 NNNNNNNNNN ............T............... GCGGCGGTACCAGAGGCCCGTGAATTCGGCGGC 4653447 28 100.0 1 NNNNNNNNNN ............T.T..........GG. NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 16 28 32 GTGAGCCCCACGCACGTGGGGATGGACC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [43.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [180,120] Score: 0/0.18 # # Final direction: F [1.05,0 Confidence: HIGH] >NC_018524 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 5116506 29 100.0 32 TGTAGGCCTC ............................. ACGATCGACACCCGTACCGGCTGGCTGCTGAT 5116567 29 100.0 32 GGCTGCTGAT ............................. AACAGGAAGGAGTCCTGATCGACCGACCCCGA 5116628 29 100.0 32 CCGACCCCGA ............................. CCGGGCGACGCCGAGGCGGTGTGGAACATCCG 5116689 29 100.0 32 GGAACATCCG ............................. CTTGCCTTCGAGGGCTTCCTCGATCTCCCGGT 5116750 29 100.0 32 ATCTCCCGGT ............................. GGAGGCGCTGCTGGAGGCCCCGGCAGTCTGGG 5116811 29 96.6 32 GCAGTCTGGG A............................ AACCGTGGCCAGCGCCAGACGGTACACCCAAA 5116872 29 100.0 32 TACACCCAAA ............................. GAGCTCGTGCAGATAGATAGCCCCGCCGGCCT 5116933 29 100.0 33 CCGCCGGCCT ............................. CTTCGAGGGCTCGGGGGAAGGGTCCTGGGGCGG 5116995 29 100.0 32 CCTGGGGCGG ............................. GGTGGCGCAGGCGGCCACTCCGGGCCAGTGGC 5117056 29 100.0 32 GGCCAGTGGC ............................. TTTTTCGCCGGCTTGATCTCATCCTCGAAGTA 5117117 29 100.0 CCTCGAAGTA ............................. CCGGGCGACGC ========== ====== ====== ====== ========== ============================= 11 29 32 GGGGTCATCCCCGCGTGCGCGGGGAGCAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [3,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [28.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [168,217] Score: 0/0.18 # # Final direction: R [0,0.27 Confidence: MEDIUM] >NC_018524 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 5118263 29 100.0 32 GCACAGTCTG ............................. AGAGCCCCGCCGAGGAATCGGTTCTTCGTGAA 5118324 29 100.0 33 TCTTCGTGAA ............................. ACCCCCTGGCAGGCCCTGGGGCTGCTCCCGATG 5118386 29 100.0 32 GCTCCCGATG ............................. TCCCAGGCGTGTCCGTGCTTGGTGTCCCGGTG 5118447 29 100.0 32 TGTCCCGGTG ............................. GCCCCCAGAAGGGGTTGTTATCACCTCGTGAT 5118508 29 100.0 32 ACCTCGTGAT ............................. ACCCAGAGCACGAGCTTGCCGGGGTGGTCCTC 5118569 29 100.0 32 GGTGGTCCTC ............................. CCGCCAAGCTCTACGCGCATCTGCCCGGAGGG 5118630 29 100.0 32 GCCCGGAGGG ............................. GGTGACGGTCTCGCGGATGACCTCCCGCACGG 5118691 29 100.0 TCCCGCACGG ............................. TCTTCCTGAC ========== ====== ====== ====== ========== ============================= 8 29 32 GGGGCCATCCCCGCGTGCGCGGGGAGCAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [3,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [13,116] Score: 0.18/0.18 # # Final direction: F [0.37,0.18 Confidence: MEDIUM] >NC_018525 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3972661 28 100.0 32 NNNNNNNNNN .GGA...A......G............. ACTTCAACGACTACACCGTTTTTACGCTGGTG 3972721 28 100.0 32 NNNNNNNNNN ................G........... TCTTTAAGGCGCATGAACTGGTTGATGAAGAC 3972781 28 100.0 32 NNNNNNNNNN ................G........... GGTGTATCAGCCACGGATACAGAGCGTTTACT 3972841 28 100.0 32 NNNNNNNNNN ................G........... TTTATCGAATTAGCTGCAATGCTGGGCTATGA 3972901 28 100.0 32 NNNNNNNNNN ............................ TTCTTTATGCCGTCGATCCGGCGGCTGTGATC 3972961 28 100.0 32 NNNNNNNNNN ............................ TACCGCGTTCAATCCGGGAGCGTGCCGCACGG 3973021 28 100.0 32 NNNNNNNNNN ............................ TTCCCATAGCAGCAATTGCCGCCTGAGCGCCG 3973081 28 100.0 32 NNNNNNNNNN ............................ CAGCGCGGTAATAGCGCGATAATCATGGACCC 3973141 28 100.0 32 NNNNNNNNNN ............................ AAATAGTCACTGATTATTTTTCGTGTTGTCAT 3973201 28 100.0 32 NNNNNNNNNN ............................ CATTGCTTCCAGTTCAGCCTCTCGCTCAGCAC 3973261 28 100.0 32 NNNNNNNNNN ............................ TCCTGAATATCGGAATACCTACAGGAGCTACT 3973321 28 100.0 32 NNNNNNNNNN ............................ GAGCGCCGACTTGCGCCATCCAAAGAGCCGTA 3973381 28 100.0 32 NNNNNNNNNN ............................ CGGCCTCAATGCGGATTTTTGTGATGCCGAGT 3973441 28 100.0 32 NNNNNNNNNN ............................ GTGAAGCGCGGCTGGTGGGGCGTGCGTGAAAT 3973501 28 100.0 32 NNNNNNNNNN ............................ CAACAACGAGCGTAGTTGGGGTGATCCCCAGA 3973561 28 100.0 32 NNNNNNNNNN ............................ GATGGCATAGGCGCTGTCACCATGCCGTTTAT 3973621 28 100.0 32 NNNNNNNNNN ............................ CTGGTCTGGTGCTGGTGGCTGGGGTTATTGCT 3973681 28 100.0 32 NNNNNNNNNN ............................ CAGGTTCCCGCAAGGCGGTAATGAGCGAGTAC 3973741 28 100.0 32 NNNNNNNNNN ............................ CGATCGGCGTCCTGCTACCGAATGATGAGATT 3973801 28 100.0 32 NNNNNNNNNN ............................ CGGGTTGAGAGCGCGCAGGCCGTCGCCAGCGT 3973861 28 100.0 32 NNNNNNNNNN ............................ AATGACGTGAAGGAGCTGCTAACCCAGGCATT 3973921 28 100.0 32 NNNNNNNNNN ............................ GGTGCCCTCAATAAGATTTACCGGCATGGTAA 3973981 28 100.0 32 NNNNNNNNNN ............................ TTTCAATGCATCGCGGTAATCACGCACAATCG 3974041 28 100.0 32 NNNNNNNNNN ............................ ACAGCTTGAGCGGTTCCCCTTTATCCATCCAG 3974101 28 100.0 32 NNNNNNNNNN ............................ CTGCAAGCGGCGATCTAACTCTTCATCGGTCA 3974161 28 100.0 32 NNNNNNNNNN ............................ CCCTCTGCCGTGGTTAATCGCGCACCTTGACT 3974221 28 100.0 32 NNNNNNNNNN ............................ AAATCCTCTAGCCTCTGGCAGATACATTGCGT 3974281 28 100.0 32 NNNNNNNNNN ............................ GATGCGTTTCTGTCCGCGTTCCAAGCGTCTCT 3974341 28 100.0 32 NNNNNNNNNN ............................ TCGCCGTTGAACGTCCGAGAATGGCAACGTTA 3974401 28 100.0 32 NNNNNNNNNN ............................ AGCTTTAGCTATCGTATCCCTCTGGCTTTTCA 3974461 28 100.0 32 NNNNNNNNNN ............................ CACACGCCCGGACGCACCCGCGAGTTTAGCCA 3974521 28 100.0 32 NNNNNNNNNN ............................ CCGTGGCCATCACGCCAACATAGCCCCCTTCA 3974581 28 100.0 32 NNNNNNNNNN ............................ AACAGGCTTTAGCACCGTATCAATGGCGCTCT 3974641 28 100.0 32 NNNNNNNNNN ............................ GTCATACGATGGCTGCTGCTACGTATTCTTTG 3974701 28 100.0 32 NNNNNNNNNN ............................ CCGGGCATCAAGCCGAAATTCACAACGGCAGA 3974761 28 100.0 32 NNNNNNNNNN ............................ CAAAAACAGGAGGGTATGCGCCTGGTTTTTCT 3974821 28 100.0 32 NNNNNNNNNN ............................ TTGATTTTTAGGAAGTTGTCGCCAGAGTAGCT 3974881 28 100.0 32 NNNNNNNNNN ............................ CAAAGGAGCCAACGATGGGATTAGCTATCGCG 3974941 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 39 28 32 TTTCTAAGCTGCCTATACGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [253,297] Score: 0/0.18 # # Final direction: R [0,0.78 Confidence: HIGH] >NC_018526 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 382055 20 100.0 37 TTTTTTATAT .................... TCGTCGGTAGACGATTCTCATTGTACGTGGGACGTCC 382112 20 95.0 60 TGGGACGTCC ..G................. CTGCCGTGCCGGCAGGCAGTTTTCTTTATACTCAAAAGTCCGGGGGACAGTCATTTTTAT 382192 20 100.0 37 TCATTTTTAT .................... TCGTCGGTAGACGATTCTCATTGTACGTGGGATGTCC 382249 20 95.0 TGGGATGTCC ..G................. CTGCCGTTAGG ========== ====== ====== ====== ========== ==================== 4 20 44 TAAAAGGTTGGAGATTGGAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [39,254] Score: 0.18/0.18 # # Final direction: F [0.68,0.18 Confidence: MEDIUM] >NC_018527 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 3961495 19 100.0 45 NNNNNNNNNN AGA..T..T....G..... GACGACGTCTACTTTGATGGTTGCCATATCGACTCCTGTCGATCG 3961559 19 100.0 28 NNNNNNNNNN ................... TACTCCGATCCCATGCCGTGGTTGGCCA 3961606 19 100.0 27 NNNNNNNNNN ................... TTACTCTGGCCCCGCGGCGGTCGATCG 3961652 19 100.0 28 NNNNNNNNNN ................... CACTCCGATCCCATGCCGTGATCGGCCG 3961699 19 100.0 1 NNNNNNNNNN .....C......G...A.G NNNNNNNNNN ========== ====== ====== ====== ========== =================== 5 19 32 GAGTCAGCGCTTCAGCGCT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [6-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [30.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [632,160] Score: 0.18/0.18 # # Final direction: R [0.18,1.05 Confidence: HIGH] >NC_018528 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 580774 32 100.0 34 NNNNNNNNNN ................................ AATGACTGATGAACAAAAGACAGCATTGAAGAAT 580840 32 100.0 36 NNNNNNNNNN ................................ TGTTCAGCTCTATCTTGATGTCAAAGATCCTAACGG 580908 32 100.0 36 NNNNNNNNNN ................................ ATTCTGTAAGGACTGAAACACAAACTCTAAAATATA 580976 32 100.0 34 NNNNNNNNNN ................................ ATCGTTATGCAGGTATTACTACTGCTACTAATAC 581042 32 100.0 35 NNNNNNNNNN ................................ TCAGGAGATACTGCCGTTGGCTTTGAAGATAAATA 581109 32 100.0 35 NNNNNNNNNN ................................ AATTCATTACTGGCATTACTCCAGTCACTGCGCCA 581176 32 100.0 35 NNNNNNNNNN ................................ GAAAGGAAATATATATGTCAGTCAAAGTTAATGGT 581243 32 100.0 35 NNNNNNNNNN ................................ GATTTTGTTAGAAAATTAACCGATGATTTTTTACA 581310 32 100.0 34 NNNNNNNNNN ................................ TACCCACCTAGCTTAGCACCTACATGGAATGACA 581376 32 100.0 36 NNNNNNNNNN ................................ CATTGTAGTAAAAGTTGCAGGGTCTTGAGTAAGAAC 581444 32 100.0 34 NNNNNNNNNN ................................ AATTAAGTCTAATCATAGGGGCAATAATTGCTTA 581510 32 100.0 35 NNNNNNNNNN ................................ TTTTTCGTCTTCTGCTCCTAGTGACTTAGTGAGCC 581577 32 100.0 34 NNNNNNNNNN ................................ AAGTGAATCGACAGGTATTGCAGATGATGATTTA 581643 32 100.0 35 NNNNNNNNNN ................................ AAGATGTGGAAGAGTGCAAGCACACACAGTCCCAA 581710 32 100.0 34 NNNNNNNNNN ................................ TTAGAATACTTATGATCCTTAGATAGATGAACCG 581776 32 100.0 35 NNNNNNNNNN ................................ CTCTGATCTGCTCAGCACGTTGCTCTTGCTTTGAA 581843 32 100.0 35 NNNNNNNNNN ................................ GATTATTCGGAACAACAGATGATCCTAAATGCTCA 581910 32 100.0 35 NNNNNNNNNN ................................ CTAAAGCATACTTAGTAGCATATGAACTGGCTGAC 581977 32 100.0 34 NNNNNNNNNN ................................ TACAAACACTTGCCAACTTATAATCCACAAATGC 582043 32 100.0 34 NNNNNNNNNN ................................ AAAGGTGTGTGGATACCTGCTGAATATTGGTTAG 582109 32 100.0 35 NNNNNNNNNN ................................ AGCATCAACGGCTCTAATTATGTCATTGCCGGTTT 582176 32 100.0 34 NNNNNNNNNN ................................ ACCTGATCAAACGTTAGGCAATAGATTAACCGAA 582242 32 100.0 34 NNNNNNNNNN ................................ TTTACGAATGTCTTGCCAATTAGTATATTTACTT 582308 32 100.0 34 NNNNNNNNNN ................................ AGAATCAAGACCACCTGTTAGCGTTTTACCACCG 582374 32 100.0 35 NNNNNNNNNN ................................ AAAGAACATAGTTTGCAGAACTGTTTCCAAGTAAA 582441 32 100.0 36 NNNNNNNNNN ................................ GGCTTTAGATGCGTCAAATGCCGCCTGTGGGCTATC 582509 32 100.0 34 NNNNNNNNNN ................................ AGAAGATGGATACAATTTTTAGAAATTCCAGTCT 582575 32 100.0 35 NNNNNNNNNN ................................ ACACCATATGTGGTCAACGCTTTAATTGGATTACG 582642 32 100.0 34 NNNNNNNNNN ................................ ACTAACTGGAACATCCAAGTACTGTGCGGAAACC 582708 32 100.0 35 NNNNNNNNNN ................................ ATCGGCTAATTGCTTTTCAAGTGAATCAGCCTTTG 582775 32 100.0 34 NNNNNNNNNN ................................ ACTGAGACGCTAGACGCTATTAGATCACAGTCAC 582841 32 100.0 35 NNNNNNNNNN ................................ ATCAAGCTTGCCAACGGGTCGATTTTATTCTGTGA 582908 32 100.0 34 NNNNNNNNNN ................................ TTTTGAATAGATGGCATGTAAGTCTGATATAGTT 582974 32 100.0 34 NNNNNNNNNN ...........C.................... TTTAGGTCCATTGCACTCTTGCCAGTGAAGTCGT 583040 32 100.0 1 NNNNNNNNNN ................TGCAC.T.TGG.TGTA NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 35 32 34 GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [6,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [163,600] Score: 0.18/0.18 # # Final direction: F [5.55,0.55 Confidence: HIGH] >NC_018586 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2697137 36 100.0 30 NNNNNNNNNN TG.G..T.GAT.....G.....T............. AAACATAAGTTCAATCTCTTCCCCATCACT 2697203 36 100.0 30 NNNNNNNNNN .................................... GCTAAACCAATGACAGCTGGCAACGCTCCA 2697269 36 100.0 30 NNNNNNNNNN .................................... AAGACTAACTTCTGGTCGAGCTCATTACCG 2697335 36 100.0 30 NNNNNNNNNN .................................... GAGTTTTTAGGTGCTTTCCCCTCTTTAATA 2697401 36 100.0 30 NNNNNNNNNN .................................... AAACCGACTCTAAACAGTTCCGTGCCAAGT 2697467 36 100.0 30 NNNNNNNNNN .................................... AAACCGACTCTAAACAGTTCCGTGCCAAGT 2697533 36 100.0 30 NNNNNNNNNN .................................... AAACCGACTCTAAACAGTTCCGTGCCAAGT 2697599 36 100.0 30 NNNNNNNNNN .................................... ATAACCTCTTGGACTAGCTTGTGCAAACTC 2697665 36 100.0 30 NNNNNNNNNN .................................... AGCGAGATAGTAGATGCTAGACAAGACTTA 2697731 36 100.0 30 NNNNNNNNNN .................................... GATGGATGTGTCTGGATCGATGGATCAGGC 2697797 36 100.0 30 NNNNNNNNNN .................................... AAGTCAAGACTTGTACAAACGTGTCACAAT 2697863 36 100.0 30 NNNNNNNNNN .................................... TGGAGTGGTGCGAACTATAGCAAGCGCATC 2697929 36 100.0 30 NNNNNNNNNN .................................... TCTGTCGTGATTAACGTTCCTTCTTTAGCA 2697995 36 100.0 30 NNNNNNNNNN .................................... AACACACCCGGAAATATTCAGAACTCCGAA 2698061 36 100.0 30 NNNNNNNNNN .................................... AATACCTATTATCCAATGGGGTAGAGGTCA 2698127 36 100.0 30 NNNNNNNNNN .................................... TCTAAAAGCACCGGGAAAGGAGGTGGAGTA 2698193 36 100.0 31 NNNNNNNNNN .................................... TATTATCGAAACTAGTGAAATTTATCGCGTG 2698260 36 100.0 30 NNNNNNNNNN .................................... GCAACAATCCAGTTTGATAACTTTGTCGAA 2698326 36 100.0 30 NNNNNNNNNN .................................... GTTGACCATCAATATAGTAAACGTCATTAT 2698392 36 100.0 30 NNNNNNNNNN .................................... TAAACGCCTTGTGTTCTTTGCTCTCGAATA 2698458 36 100.0 31 NNNNNNNNNN .................................... CCACCTTGCATCGTGTCAAGACAAGGTGCTA 2698525 36 100.0 30 NNNNNNNNNN .................................... TAGCTTTATAAACAGCCATTTGAAGCACAT 2698591 36 100.0 30 NNNNNNNNNN .................................... TAGCTTTATAAACAGCCATTTGAAGCACAT 2698657 36 100.0 30 NNNNNNNNNN .................................... CACAATACCTGCTATAAGAGTGACTAAAGC 2698723 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 25 36 30 GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:69.44%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [526,130] Score: 0.18/0.18 # # Final direction: R [0.45,0.78 Confidence: LOW] >NC_018587 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 556330 29 100.0 37 AATAGAGCGG ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 556396 29 100.0 36 GTTCCCATGC ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 556461 29 100.0 35 GTTAAATATT ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 556525 29 100.0 46 CTTTCAAGGG ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAGGTTTTAACT 556600 29 79.3 36 GGTTTTAACT ------....................... TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC 556665 29 100.0 36 ACACCTCGAC ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 556730 29 100.0 36 AGCCGAGTTG ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 556795 29 100.0 37 TGAATAAATT ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 556861 29 100.0 35 GTCAAATTAC ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 556925 29 100.0 36 CAATACCAGT ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 556990 29 100.0 36 GATTGTAGAG ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 557055 29 100.0 36 TGTATCACTT ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 557120 29 100.0 34 ACACCTCAAT ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 557183 29 100.0 34 TAGGTTCACG ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 557246 29 100.0 37 GTTGTTTTGC ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 557312 29 100.0 34 TGAACATTAC ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 557375 29 100.0 36 AAGTAATTTA ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 557440 29 100.0 37 GGAGTTTGGA ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 557506 29 100.0 36 GAGCGAACGG ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 557571 29 100.0 CGCTAGTTTT ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT ========== ====== ====== ====== ========== ============================= 20 29 36 GTTTTAACTACTTATTATGAAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:82.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [56.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [199,132] Score: 0/0.18 # # Final direction: R [0,0.68 Confidence: HIGH] >NC_018587 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2690187 36 100.0 30 NNNNNNNNNN TG.G..T.GAT.....G.....T............. AAACATAAGTTCAATCTCTTCCCCATCACT 2690253 36 100.0 30 NNNNNNNNNN .................................... GTAGGGGCGGGGCTTCTATATAAGTGCTAA 2690319 36 100.0 30 NNNNNNNNNN .................................... GAATGGATTTATTACGGTCATTTTGCCCAA 2690385 36 100.0 31 NNNNNNNNNN .................................... GCGCTGCTCACTTACGAAAAAACAGACTATA 2690452 36 100.0 30 NNNNNNNNNN .................................... TACTGATCTACTCCACCGCTTAACATCGTA 2690518 36 100.0 30 NNNNNNNNNN .................................... ACTCCCTGTTATCTACAAATATCGTTGCCC 2690584 36 100.0 30 NNNNNNNNNN .................................... GCACATTAGCGTCGTCTAATTTTTCCGTCG 2690650 36 100.0 30 NNNNNNNNNN .................................... AGGCTCCTTTATGATCTGATTTATTGCTTT 2690716 36 100.0 30 NNNNNNNNNN .................................... AAGTCAAACACTTTAATCGCGGCACCAATA 2690782 36 100.0 30 NNNNNNNNNN .................................... AAGTCAAACACTTTAATCGCGGCACCAATA 2690848 36 100.0 30 NNNNNNNNNN .................................... AACTCGTAGTTTTTGTTTTCAGATTTAGGA 2690914 36 100.0 30 NNNNNNNNNN .................................... TGTTACTGCTTCGCCGATGCTTGTTTTACC 2690980 36 100.0 30 NNNNNNNNNN .................................... CCAAAGGAGCTAATTTACTCCCTAAACCTA 2691046 36 100.0 30 NNNNNNNNNN .................................... TTGAGGCTAGCGGATATACTTTTGAATACG 2691112 36 100.0 30 NNNNNNNNNN .................................... TATACAAAAGTAATAGAGATAATAAATACT 2691178 36 100.0 30 NNNNNNNNNN .................................... TAGCAAGAGCGATATTATCAATATTATTTC 2691244 36 100.0 30 NNNNNNNNNN .................................... ACCGAAAGATTAAGCTTAGACATTGTATAT 2691310 36 100.0 30 NNNNNNNNNN .................................... ATACACCCACGCTACAAATAGATAACACAC 2691376 36 100.0 30 NNNNNNNNNN .................................... CAGACTGGCCGGAAGAAAAAGCGACTCTGG 2691442 36 100.0 30 NNNNNNNNNN .................................... TAATGGACAAAGCTACCGAAGACACAAAAG 2691508 36 100.0 30 NNNNNNNNNN .................................... GGAGTACCTCTTCCGGAATATCGAAAAGAG 2691574 36 100.0 30 NNNNNNNNNN .................................... TTATCCATGCCATCATAGCCCCAAGCATTG 2691640 36 100.0 30 NNNNNNNNNN .................................... TGAGGAGAGCCCGTCCAGCGTCGAAGTGGA 2691706 36 100.0 30 NNNNNNNNNN .................................... GAGTCTTGCGTACTAAACCTTATCTGAGGA 2691772 36 100.0 30 NNNNNNNNNN .................................... AATTGCGCTTGCCAACATTAAATGCCCCGT 2691838 36 100.0 30 NNNNNNNNNN .................................... GTATATTAGCCATACAATAAGCCCCCATAT 2691904 36 100.0 30 NNNNNNNNNN .................................... AGGGCATTGGCTGAATGACTACATTGCTCT 2691970 36 100.0 31 NNNNNNNNNN .................................... TACGAGATTATTCAGAACCAAATGCAAGAGA 2692037 36 100.0 30 NNNNNNNNNN .................................... CTAAGAAGACCAATGCTGAAACTGAAGCGC 2692103 36 100.0 30 NNNNNNNNNN .................................... TAAACGGCGTATTCACAGGTGAAACTGAAG 2692169 36 100.0 30 NNNNNNNNNN .................................... CAAGTTGAAGATATTAACTACATTCAGACA 2692235 36 100.0 30 NNNNNNNNNN .................................... TTGCTAATTCTTTAGCAGTATCTAAAGTTA 2692301 36 100.0 30 NNNNNNNNNN .................................... TACGAGGAGAGACAGTACAAACGTGAAAAA 2692367 36 100.0 30 NNNNNNNNNN .................................... TAATGATGAGTTACTTGGAATTTGTACAAT 2692433 36 100.0 30 NNNNNNNNNN .................................... TAGTAGTATTCTTAGCAGACAATAAAAGTA 2692499 36 100.0 30 NNNNNNNNNN .................................... CTTTTACAGTTACAGCATTGAATAATATTT 2692565 36 100.0 30 NNNNNNNNNN .................................... ATATACGAGTAGAAAGGAAACATCTATATG 2692631 36 100.0 30 NNNNNNNNNN .................................... CGCCCCTGCATGTGTATACTATGGTACGAA 2692697 36 100.0 30 NNNNNNNNNN .................................... CGCACCTGTGACACCTAACTGGTCTATTGC 2692763 36 100.0 30 NNNNNNNNNN .................................... TAACGCCTTGCTTCTTGACAAAGGTATTCG 2692829 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 41 36 30 GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:69.44%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [527,130] Score: 0.18/0.18 # # Final direction: R [0.45,0.78 Confidence: LOW] >NC_018589 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 543107 29 100.0 36 AAGTTAGTGG ............................. CGATAAAAAAGATATTAGTAATTTATTTGCAATTTA 543172 29 100.0 36 TTGCAATTTA ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 543237 29 100.0 35 AGCATGTAGC ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 543301 29 100.0 37 TGGGTTACAA ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC 543367 29 96.6 CCACCAAAGC .......................A..... GAAAACCTG ========== ====== ====== ====== ========== ============================= 5 29 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [239,261] Score: 0/0.18 # # Final direction: F [0.78,0.27 Confidence: MEDIUM] >NC_018588 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 543092 29 100.0 36 AAGTTAGTGG ............................. CGATAAAAAAGATATTAGTAATTTATTTGCAATTTA 543157 29 100.0 36 TTGCAATTTA ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 543222 29 100.0 35 AGCATGTAGC ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 543286 29 100.0 37 TGGGTTACAA ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC 543352 29 96.6 CCACCAAAGC .......................A..... GAAAACCTG ========== ====== ====== ====== ========== ============================= 5 29 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [239,261] Score: 0/0.18 # # Final direction: F [0.78,0.27 Confidence: MEDIUM] >NC_018590 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 530076 29 100.0 35 NNNNNNNNNN ............................. ACGATTGAAAAACTGCAAAAGGTCGCAGACTTCTT 530140 29 100.0 37 NNNNNNNNNN ............................. TTTCCCACTACTGCCTTAAAATGCGTGCCTGGCGTGA 530206 29 100.0 34 NNNNNNNNNN ............................. ACATGCGACACAGTTCGCGGTGAAATTCCGCAGC 530269 29 100.0 36 NNNNNNNNNN ............................. ATCTCTATCAATTGGCAAAAGTGAATTTGTGGTAGT 530334 29 100.0 35 NNNNNNNNNN ............................. TTGTCATCATATTTAAAAACTTTTATTAACTCACT 530398 29 100.0 34 NNNNNNNNNN ..............T.............. ATTTTTAACATAAAAAATAAGCCTACTCGGCTTT 530461 29 100.0 36 NNNNNNNNNN ..............T...A.......... ATGTGTAATTTTATTGGCTTCATTGATTAGTGTTTC 530526 29 100.0 35 NNNNNNNNNN ..............T.............. TTATGACTTCATCACCTTCCATGTAACACTATTTT 530590 29 100.0 35 NNNNNNNNNN ..............T...........G.. ATCACTCCCGGCTTATCTAGCGGATTCCCTTGTTT 530654 29 100.0 35 NNNNNNNNNN ......T...................... GGAATCACGGATAGTCAGGCGAAGATAACTAAACC 530718 29 100.0 1 NNNNNNNNNN ......A.......TCA.A....A..... NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 11 29 35 GTTTTAGTTACTTAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [238,79] Score: 0.18/0.18 # # Final direction: F [0.96,0 Confidence: HIGH] >NC_018591 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2660730 36 100.0 30 NNNNNNNNNN TG.G..T.GAT.....G.....T............. AAACATAAGTTCAATCTCTTCCCCATCACT 2660796 36 100.0 30 NNNNNNNNNN .................................... GTAGGGGCGGGGCTTCTATATAAGTGCTAA 2660862 36 100.0 30 NNNNNNNNNN .................................... GAATGGATTTATTACGGTCATTTTGCCCAA 2660928 36 100.0 31 NNNNNNNNNN .................................... GCGCTGCTCACTTACGAAAAAACAGACTATA 2660995 36 100.0 30 NNNNNNNNNN .................................... TACTGATCTACTCCACCGCTTAACATCGTA 2661061 36 100.0 30 NNNNNNNNNN .................................... ACTCCCTGTTATCTACAAATATCGTTGCCC 2661127 36 100.0 30 NNNNNNNNNN .................................... GCACATTAGCGTCGTCTAATTTTTCCGTCG 2661193 36 100.0 30 NNNNNNNNNN .................................... AGGCTCCTTTATGATCTGATTTATTGCTTT 2661259 36 100.0 30 NNNNNNNNNN .................................... AAGTCAAACACTTTAATCGCGGCACCAATA 2661325 36 100.0 30 NNNNNNNNNN .................................... AAGTCAAACACTTTAATCGCGGCACCAATA 2661391 36 100.0 30 NNNNNNNNNN .................................... AACTCGTAGTTTTTGTTTTCAGATTTAGGA 2661457 36 100.0 30 NNNNNNNNNN .................................... TGTTACTGCTTCGCCGATGCTTGTTTTACC 2661523 36 100.0 30 NNNNNNNNNN .................................... CCAAAGGAGCTAATTTACTCCCTAAACCTA 2661589 36 100.0 30 NNNNNNNNNN .................................... TTGAGGCTAGCGGATATACTTTTGAATACG 2661655 36 100.0 30 NNNNNNNNNN .................................... TATACAAAAGTAATAGAGATAATAAATACT 2661721 36 100.0 30 NNNNNNNNNN .................................... TAGCAAGAGCGATATTATCAATATTATTTC 2661787 36 100.0 30 NNNNNNNNNN .................................... ACCGAAAGATTAAGCTTAGACATTGTATAT 2661853 36 100.0 30 NNNNNNNNNN .................................... ATACACCCACGCTACAAATAGATAACACAC 2661919 36 100.0 30 NNNNNNNNNN .................................... CAGACTGGCCGGAAGAAAAAGCGACTCTGG 2661985 36 100.0 30 NNNNNNNNNN .................................... TAATGGACAAAGCTACCGAAGACACAAAAG 2662051 36 100.0 30 NNNNNNNNNN .................................... GGAGTACCTCTTCCGGAATATCGAAAAGAG 2662117 36 100.0 30 NNNNNNNNNN .................................... TTATCCATGCCATCATAGCCCCAAGCATTG 2662183 36 100.0 30 NNNNNNNNNN .................................... TGAGGAGAGCCCGTCCAGCGTCGAAGTGGA 2662249 36 100.0 30 NNNNNNNNNN .................................... GAGTCTTGCGTACTAAACCTTATCTGAGGA 2662315 36 100.0 30 NNNNNNNNNN .................................... AATTGCGCTTGCCAACATTAAATGCCCCGT 2662381 36 100.0 30 NNNNNNNNNN .................................... GTATATTAGCCATACAATAAGCCCCCATAT 2662447 36 100.0 30 NNNNNNNNNN .................................... AGGGCATTGGCTGAATGACTACATTGCTCT 2662513 36 100.0 31 NNNNNNNNNN .................................... TACGAGATTATTCAGAACCAAATGCAAGAGA 2662580 36 100.0 30 NNNNNNNNNN .................................... CTAAGAAGACCAATGCTGAAACTGAAGCGC 2662646 36 100.0 30 NNNNNNNNNN .................................... TAAACGGCGTATTCACAGGTGAAACTGAAG 2662712 36 100.0 30 NNNNNNNNNN .................................... CAAGTTGAAGATATTAACTACATTCAGACA 2662778 36 100.0 30 NNNNNNNNNN .................................... TTGCTAATTCTTTAGCAGTATCTAAAGTTA 2662844 36 100.0 30 NNNNNNNNNN .................................... TACGAGGAGAGACAGTACAAACGTGAAAAA 2662910 36 100.0 30 NNNNNNNNNN .................................... TAATGATGAGTTACTTGGAATTTGTACAAT 2662976 36 100.0 30 NNNNNNNNNN .................................... TAGTAGTATTCTTAGCAGACAATAAAAGTA 2663042 36 100.0 30 NNNNNNNNNN .................................... CTTTTACAGTTACAGCATTGAATAATATTT 2663108 36 100.0 30 NNNNNNNNNN .................................... ATATACGAGTAGAAAGGAAACATCTATATG 2663174 36 100.0 30 NNNNNNNNNN .................................... CGCCCCTGCATGTGTATACTATGGTACGAA 2663240 36 100.0 30 NNNNNNNNNN .................................... CCATATTAGCACAGTTATTATACTACTATC 2663306 36 100.0 30 NNNNNNNNNN .................................... CGCACCTGTGACACCTAACTGGTCTATTGC 2663372 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 41 36 30 GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:69.44%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [527,130] Score: 0.18/0.18 # # Final direction: R [0.45,0.78 Confidence: LOW] >NC_018591 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 556259 29 100.0 36 ACACCTCGAC ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 556324 29 100.0 36 AGCCGAGTTG ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 556389 29 100.0 37 TGAATAAATT ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 556455 29 100.0 35 GTCAAATTAC ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 556519 29 100.0 36 CAATACCAGT ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 556584 29 100.0 36 GATTGTAGAG ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 556649 29 100.0 36 TGTATCACTT ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 556714 29 100.0 34 ACACCTCAAT ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 556777 29 100.0 34 TAGGTTCACG ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 556840 29 100.0 37 GTTGTTTTGC ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 556906 29 100.0 34 TGAACATTAC ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 556969 29 100.0 AAGTAATTTA ............................. TATAAAATAT ========== ====== ====== ====== ========== ============================= 12 29 35 GTTTTAACTACTTATTATGAAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:82.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [528,334] Score: 0/0.18 # # Final direction: NA [0,0 Confidence: NA] >NC_018591 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 557034 29 100.0 37 GGAGTTTGGA ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 557100 29 100.0 36 GAGCGAACGG ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 557165 29 100.0 CGCTAGTTTT ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT ========== ====== ====== ====== ========== ============================= 3 29 36 GTTTTAACTACTTATTATGAAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:82.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [70.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1303,138] Score: 0.18/0.18 # # Final direction: R [0.18,0.27 Confidence: LOW] >NC_018593 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 506166 29 100.0 37 AAAGTTAGAG ............................. TTTATTTCTCCTACGCTTTTCTTATTTCTGTAAATAA 506232 29 100.0 35 CTGTAAATAA ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 506296 29 96.6 36 TCCTTTCTAT A............................ ACAATAATAGGATATTTTGGATTTGTCTGCGTTCCT 506361 29 100.0 CTGCGTTCCT ............................. TTGGTTCCTTT ========== ====== ====== ====== ========== ============================= 4 29 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [237,395] Score: 0/0.18 # # Final direction: F [0.78,0.27 Confidence: MEDIUM] >NC_018592 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 523674 29 100.0 36 AAGTTAGTGG ............................. TCTTTAGTTGTTACTTGTTGGTTAATGAGATCTACC 523739 29 100.0 36 GAGATCTACC ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 523804 29 100.0 35 AGCATGTAGC ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 523868 29 100.0 37 TGGGTTACAA ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC 523934 29 100.0 34 CCACCAAAGC ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 523997 29 100.0 35 TCGTTTATAA ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 524061 29 96.6 36 TCCTTTCTAT A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 524126 29 100.0 35 ATCAAATTAA ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 524190 29 96.6 TTACAATTTC ................A............ TTGGTTCCTTT ========== ====== ====== ====== ========== ============================= 9 29 35 GTTTTAGTTACTTATTGTGAAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [240,393] Score: 0/0.18 # # Final direction: F [0.78,0.27 Confidence: MEDIUM] >NC_018592 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2641953 36 100.0 30 NNNNNNNNNN TA.G..T.G.T.....G.....TG..T......... CAAGTTAAAGATATCAACTACATTCAGACA 2642019 36 100.0 30 NNNNNNNNNN .................................... AGCTTGCGTTTAGAGGACGAAGAAAAACTA 2642085 36 100.0 30 NNNNNNNNNN .................................... AGTAATCTCCTTTTCCAAGGACCATCACGT 2642151 36 100.0 30 NNNNNNNNNN .................................... TTGATAGATAGTGTTAGAAGGGAAATTTAA 2642217 36 100.0 31 NNNNNNNNNN .................................... TTCAGACTATGTTTTCAACAAAGGGATGCTA 2642284 36 100.0 30 NNNNNNNNNN .................................... TCGCCTGTTTGGGCTGTGAACCGAGCTGTT 2642350 36 100.0 30 NNNNNNNNNN .................................... AGCTTGCGTTTAGAGGACGAAGAAAAACTA 2642416 36 100.0 30 NNNNNNNNNN .................................... AGTAATCTCCTTTTCCAAGGACCATCACGT 2642482 36 100.0 30 NNNNNNNNNN .................................... TTGATAGATAGTGTTAGAAGGGAAATTTAA 2642548 36 100.0 31 NNNNNNNNNN .................................... TTCAGACTATGTTTTCAACAAAGGGATGCTA 2642615 36 100.0 30 NNNNNNNNNN .................................... TCGCCTGTTTGGGCTGTGAACCGAGCTGTT 2642681 36 100.0 30 NNNNNNNNNN .................................... TCATAGTCTGTTGGAACATCTGCATGAACT 2642747 36 100.0 30 NNNNNNNNNN .................................... TTCCCAGCCGTAATAGATACTAAATTACCA 2642813 36 100.0 30 NNNNNNNNNN .................................... GTGTTTCTTTCCCACCTTCTGGTTCAACGC 2642879 36 100.0 30 NNNNNNNNNN .................................... GCTGCCTCGCTTTACTCTTCGTTATCTCCA 2642945 36 100.0 30 NNNNNNNNNN .................................... AACACACCGAGCAATAGAAATACACTGTTA 2643011 36 100.0 30 NNNNNNNNNN .................................... GAATAATCCGTACAGCCTTATCATTATCAA 2643077 36 100.0 30 NNNNNNNNNN .................................... GAAAAAGTTGTCGATCTTACAAAAAAATTC 2643143 36 100.0 30 NNNNNNNNNN .................................... ACCAACGGCGCGCAAAAGAAAATCATTAAA 2643209 36 100.0 30 NNNNNNNNNN .................................... TGCGCACGCCAGTCTACACTTAGACTTGGT 2643275 36 100.0 30 NNNNNNNNNN .................................... GCTATAGAGATCCATTTAACCGTTTCATAC 2643341 36 100.0 30 NNNNNNNNNN .................................... AGCGTCAGAGCCCTCTTCTTCCACACGTGT 2643407 36 100.0 30 NNNNNNNNNN .................................... GCGCTTCCCATCGATTTAAACGCATTTACA 2643473 36 100.0 30 NNNNNNNNNN .................................... CCTTTGGAGGAACTGAATTTACTGGCACTA 2643539 36 100.0 30 NNNNNNNNNN .................................... GCCTTGCTTGACCCAACTAGTGACTTCTTC 2643605 36 100.0 30 NNNNNNNNNN .................................... TTGTTGTCGTCGGGTAGTTCGCCCATATCT 2643671 36 100.0 31 NNNNNNNNNN .................................... ATTCGTGAATGCCGACAATCGTTCATTTCCA 2643738 36 100.0 30 NNNNNNNNNN .................................... GGTGAGGTAAATCAATATAAAGATGCATTA 2643804 36 100.0 30 NNNNNNNNNN .................................... TCGTCCACTCTAGTAGCATCTAGGTCTAGG 2643870 36 100.0 30 NNNNNNNNNN .................................... GTCATTTTTAATAGTTTCAATTGCTGATAA 2643936 36 100.0 30 NNNNNNNNNN .................................... TCAAAAGCGCGCATGAGGAAGAAATCACGA 2644002 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 32 36 30 GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:69.44%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [179,130] Score: 0/0.18 # # Final direction: R [0.27,0.78 Confidence: MEDIUM] >NC_018608 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 55513 36 100.0 36 NNNNNNNNNN .................................... TCTATAAGTTCATTAATTCCGATACCTAGATTATCT 55585 36 100.0 34 NNNNNNNNNN .................................... TTTTTTCCACCCTTTCAGATCATCTATGATCTTG 55655 36 100.0 34 NNNNNNNNNN .................................... AATTTTCTAATTCTATAAGTTCATTAATTCCGAT 55725 36 100.0 36 NNNNNNNNNN .................................... TATACTATTTACATAATTTTTTATGTGTCTGTCTAC 55797 36 100.0 37 NNNNNNNNNN .................................... TAATAGTGTTGTTCTCTATTAAAAGATACAATCCTGT 55870 36 100.0 34 NNNNNNNNNN .................................... TAGAATGTTATTATCTAAGTGGTCGATGTATTCC 55940 36 100.0 37 NNNNNNNNNN .................................... TCATACTAGCACCCCACTCTCTACTGAACAAGTATCA 56013 36 100.0 35 NNNNNNNNNN .................................... CTTAAAATCTAATTGCATTGTTATCAATTCCTTTA 56084 36 100.0 38 NNNNNNNNNN .................................... TCTGTAATGTATTCATTTAATGTAATCATAATTTTTTC 56158 36 100.0 37 NNNNNNNNNN .................................... TAGACCATTTACCTCATTATATTTATAGTCTTTATTA 56231 36 100.0 35 NNNNNNNNNN .................................... TTTTCTTTAACTGTTTTTACTGCCCATTTAATAGT 56302 36 100.0 36 NNNNNNNNNN .................................... ATATTTCTTCCATGAATAACACCCTCCTTTTTTCTA 56374 36 100.0 35 NNNNNNNNNN .................................... AAGTTAACGGCATTACCTAATAAAAATATTTTAGG 56445 36 100.0 33 NNNNNNNNNN ...................................C TCATCTTTCATGTCACTGATTAATTCATTTGTA 56514 36 100.0 35 NNNNNNNNNN ...................................C GGTAATAGTTGCTCAATAGGTAATAAAACGTCGGT 56585 36 100.0 1 NNNNNNNNNN ............T.................AGAGTG NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 16 36 35 GATCGATAACTACCCCGAATAACAGGGGACGAGAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.20,-7.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [70.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [451,75] Score: 0.18/0.18 # # Final direction: F [0.96,0.27 Confidence: MEDIUM] >NC_018610 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 115858 28 100.0 33 TTTGTTTAGT ............................ TACATGGTAGGAAAAGTCTTAGCGGCACACGTT 115919 28 100.0 33 GGCACACGTT ............................ CAGTCTGGAGGACTAAACAATGAAAATAACCAT 115980 28 100.0 33 AAATAACCAT ............................ TAGCGATAACTCTGCTCCAAACCCTTTGGCGTT 116041 28 100.0 33 CTTTGGCGTT ............................ TCAAGTTCTGGTTTAGAACTTTAGGAGGTGAGC 116102 28 100.0 35 GGAGGTGAGC ............................ ACCAGATACCGGTGGCACGATGATTCCTCACGATG 116165 28 100.0 33 CCTCACGATG ............................ CGAACGTTTTACCCGCTCGGACAGCTCCGTAAT 116226 28 100.0 33 GCTCCGTAAT ............................ TAATCTGATTTCGCTGCCCGCCTCAGTAACCCT 116287 28 100.0 33 CAGTAACCCT ............................ TAATTTCCGTGTTGGACGGTATGGGATAGGATG 116348 28 100.0 33 GGATAGGATG ............................ TCCTTCTTGGTAATCTCTTTGTATTGCTCAGGA 116409 28 100.0 34 TTGCTCAGGA ............................ TTCTTGAATCTGTTCATCCCGCTTGGAATCTTTG 116471 28 100.0 GGAATCTTTG ............................ TCACGGTGA ========== ====== ====== ====== ========== ============================ 11 28 33 GTATTCCCCACGTACGTAGGGGTGATCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [352,433] Score: 0/0.18 # # Final direction: R [0.27,0.74 Confidence: MEDIUM] >NC_018609 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================================== ====== 1164086 47 100.0 30 ATTTTTTGAG ............................................... CCTCAGTTTCTTCATCCACCCTACTGGTGG 1164163 47 100.0 30 CTACTGGTGG ............................................... TTTCCTGCCCTTAATAATTTTAGCGATAAA 1164240 47 100.0 30 TAGCGATAAA ............................................... TAACCCGCCAAATCGCCTGTTTGGAAAATA 1164317 47 100.0 30 TTGGAAAATA ............................................... TATTGTTGCTAAATGCTCTTAGTATAAAGA 1164394 47 100.0 30 AGTATAAAGA ............................................... ACACGCACGAGGCGTAATTTATGTACGAAA 1164471 47 100.0 30 ATGTACGAAA ............................................... TCTGGCGGCGCCACCCAAAAAAAGTTGTCG 1164548 47 100.0 30 AAAGTTGTCG ............................................... GCCTGTGCCTGTGCGTATGAGTTAGAGGCT 1164625 47 100.0 30 GTTAGAGGCT ............................................... GTGTCGCTAAACTTTAAATTTTCGTGATAT 1164702 47 100.0 30 TTCGTGATAT ............................................... GCTATGGGTGCGTGGCTAGACTTTGTAGAA 1164779 47 100.0 29 CTTTGTAGAA ............................................... GCACAATTCACACTTAAAAAACAAAATAG 1164855 47 100.0 AACAAAATAG ............................................... TATGCGGTTTG ========== ====== ====== ====== ========== =============================================== 11 47 29 GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.09%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [109,183] Score: 0/0.18 # # Final direction: F [4.77,0.37 Confidence: HIGH] >NC_018610 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 126412 28 100.0 33 TTTGTTTAGT ............................ GACTATACCGAATCGTTCATGAAAAATCAACAA 126473 28 100.0 33 AAATCAACAA ............................ TATCCACGCCTTACACCTCTACTTCTTTGGTTT 126534 28 100.0 33 TCTTTGGTTT ............................ TTACGAACCCAAATCGTCAAAGCATCTGGCATG 126595 28 100.0 33 ATCTGGCATG ............................ CCAAACGCGGAAGTCTTCAACGCTAGTGAATCG 126656 28 100.0 33 TAGTGAATCG ............................ CATGTATCAGCACATTGATGGGTTAAGTGGTTA 126717 28 100.0 33 TAAGTGGTTA ............................ TAGTGAGCGCGATTGTAGACTTCATCCAATCTT 126778 28 92.9 33 ATCCAATCTT ...G...........A............ TTAGTCATCGTTTGCGTGTAAGTTGATGTCGCC 126839 28 92.9 33 TGATGTCGCC ...G...........A............ CATACCTGCCCGCCGTTTCCTGGAACGGACCAA 126900 28 96.4 33 AACGGACCAA ...G........................ TCGGATTGAGCTTGTCAAAGAACAACAGGTCAA 126961 28 96.4 33 AACAGGTCAA ...G........................ TGTGGTCTTCACTGATGCCAATGATATTTACCT 127022 28 96.4 ATATTTACCT .............A.............. TCCTTACGAGACCCCGCTCGCTGCTCAGTATGT ========== ====== ====== ====== ========== ============================ 11 28 33 GTATTCCCCACGTGTGTAGGGGTAATCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [60.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [31,135] Score: 0.18/0.18 # # Final direction: R [0.68,0.92 Confidence: LOW] >NC_018650 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1164472 29 100.0 32 NNNNNNNNNN ............................A GGAACTGGCGCTGCTGGAGCAAAACCCGGTAT 1164533 29 100.0 32 NNNNNNNNNN ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 1164594 29 100.0 32 NNNNNNNNNN ............................. TTAGCTGTTAGCCAAACATGTCGACCTGTTTG 1164655 29 100.0 32 NNNNNNNNNN ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 1164716 29 100.0 32 NNNNNNNNNN ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 1164777 29 100.0 32 NNNNNNNNNN ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 1164838 29 100.0 32 NNNNNNNNNN ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 1164899 29 100.0 32 NNNNNNNNNN ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 1164960 29 100.0 32 NNNNNNNNNN ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 1165021 29 100.0 32 NNNNNNNNNN ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 1165082 29 100.0 32 NNNNNNNNNN ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 1165143 29 100.0 32 NNNNNNNNNN ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 1165204 29 100.0 32 NNNNNNNNNN ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 1165265 29 100.0 1 NNNNNNNNNN ..........T.................A NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 14 29 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,3] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-13.40,-12.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [341,640] Score: 0/0.18 # # Final direction: F [1.65,0 Confidence: HIGH] >NC_018658 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1161011 29 100.0 32 NNNNNNNNNN ............................A GGAACTGGCGCTGCTGGAGCAAAACCCGGTAT 1161072 29 100.0 32 NNNNNNNNNN ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 1161133 29 100.0 32 NNNNNNNNNN ............................. TTAGCTGTTAGCCAAACATGTCGACCTGTTTG 1161194 29 100.0 32 NNNNNNNNNN ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 1161255 29 100.0 32 NNNNNNNNNN ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 1161316 29 100.0 32 NNNNNNNNNN ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 1161377 29 100.0 32 NNNNNNNNNN ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 1161438 29 100.0 32 NNNNNNNNNN ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 1161499 29 100.0 32 NNNNNNNNNN ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 1161560 29 100.0 32 NNNNNNNNNN ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 1161621 29 100.0 32 NNNNNNNNNN ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 1161682 29 100.0 32 NNNNNNNNNN ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 1161743 29 100.0 32 NNNNNNNNNN ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 1161804 29 100.0 1 NNNNNNNNNN ..........T.................A NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 14 29 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,3] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-13.40,-12.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [341,640] Score: 0/0.18 # # Final direction: F [1.65,0 Confidence: HIGH] >NC_018610 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 128332 28 100.0 33 NNNNNNNNNN ............................ CTTGCCGATCCACAACCGATGTAAATTCATCAA 128393 28 100.0 33 NNNNNNNNNN ............................ TAGACAGGTGCAACTAGAGCCGCCGCAAAAATA 128454 28 100.0 33 NNNNNNNNNN ............................ TGTTCACCCCGAAGTGTTTCAAGGCACTGGCAA 128515 28 100.0 33 NNNNNNNNNN ............................ CAAGCGACTGAAAAAGCTAAGAGTACCAGTAAA 128576 28 100.0 33 NNNNNNNNNN ............................ TTGCATTCTCAGGGAATAGTGTTCAAGCCGCTA 128637 28 100.0 33 NNNNNNNNNN ..................A......... CAAGCGACTGAAAAAGCTAAGAGTACCAGTAAA 128698 28 100.0 33 NNNNNNNNNN ............................ CGACTCCAAAGTCGGACCTCACCAAGAAGCAAT 128759 28 100.0 33 NNNNNNNNNN ............................ CTCCAGGCAGGGATTTGCACCCTACAAGCCTCT 128820 28 100.0 34 NNNNNNNNNN ............................ CCATCAGCTGATTATTTCAGGGTTTGAGACTCTG 128882 28 100.0 33 NNNNNNNNNN ............................ CTTGATCCCGACGTTTCCACCTTTATCAAAAGC 128943 28 100.0 33 NNNNNNNNNN ............................ CCCAGGTGTCACCATGAAGTGAATCGATGTACT 129004 28 100.0 33 NNNNNNNNNN ............................ CAATTGAGAACTGGAACACAACCACGATCAGTA 129065 28 100.0 33 NNNNNNNNNN ............................ TAGGAATGGCATATCGCGTCGCATCAATTGAAT 129126 28 100.0 33 NNNNNNNNNN ............................ TAAGGCTGAAACTTACCTGAAGCGATTGATTGA 129187 28 100.0 33 NNNNNNNNNN ............................ CTGGCGCTCGTGTTGGCGAGGTTGCCAATCTCA 129248 28 100.0 33 NNNNNNNNNN ............................ TATGCTGCCGGGCACCGGGTCGATGTAATGGGC 129309 28 100.0 33 NNNNNNNNNN ............................ CATGAAACTAGCAGGCCAAACAGACCCAGCCAG 129370 28 100.0 33 NNNNNNNNNN ............................ CAAGCCCGGTCGGCATTGTACGAGTCAGATCCT 129431 28 100.0 33 NNNNNNNNNN ............................ TGATGATAGCCACGATGAGGGCGACAACAATGC 129492 28 100.0 33 NNNNNNNNNN ............................ TCGCGTTCACAGCGTCCTGCCAATGGTCAATCA 129553 28 100.0 33 NNNNNNNNNN ............................ TATAAGAGTTGGGGGACAGCAGCCTTGCTCTCA 129614 28 100.0 33 NNNNNNNNNN ............................ TCTTCCAAGTGAGGCGGTAAGGAGCATTTTATG 129675 28 100.0 33 NNNNNNNNNN .......T.................... TTACGGTGGCGATCACATTGACCCATACGGCTA 129736 28 100.0 33 NNNNNNNNNN ...........A.G...........A.. TTCACGGTGTCCAGATTTTTGCCGGAACTCCCA 129797 28 100.0 1 NNNNNNNNNN ...........A.G........G.G.GA NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 25 28 33 GTATTCCCCACGTACGTAGGGGTGATCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [65.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [302,395] Score: 0/0.18 # # Final direction: R [0.68,0.74 Confidence: LOW] >NC_018661 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1154213 29 100.0 32 NNNNNNNNNN ............................A GGAACTGGCGCTGCTGGAGCAAAACCCGGTAT 1154274 29 100.0 32 NNNNNNNNNN ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 1154335 29 100.0 32 NNNNNNNNNN ............................. TTAGCTGTTAGCCAAACATGTCGACCTGTTTG 1154396 29 100.0 32 NNNNNNNNNN ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 1154457 29 100.0 32 NNNNNNNNNN ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 1154518 29 100.0 32 NNNNNNNNNN ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 1154579 29 100.0 32 NNNNNNNNNN ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 1154640 29 100.0 32 NNNNNNNNNN ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 1154701 29 100.0 32 NNNNNNNNNN ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 1154762 29 100.0 32 NNNNNNNNNN ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 1154823 29 100.0 32 NNNNNNNNNN ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 1154884 29 100.0 32 NNNNNNNNNN ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 1154945 29 100.0 32 NNNNNNNNNN ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 1155006 29 100.0 1 NNNNNNNNNN ..........T.................A NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 14 29 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,3] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-13.40,-12.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [341,640] Score: 0/0.18 # # Final direction: F [1.65,0 Confidence: HIGH] >NC_018610 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1941839 36 100.0 31 GGATCGTCGG .................................... CCATTAACTGAATCATCATCAGAACTGTCAT 1941906 36 100.0 30 GAACTGTCAT .................................... CCACAATCTCGGGATCCACTTATACATTAA 1941972 36 100.0 30 TATACATTAA .................................... GTCTAAAATGGACACTATTTATTCATCCAT 1942038 36 100.0 30 ATTCATCCAT .................................... AATGATTTGGAAGTATGTAGATTTGATTTG 1942104 36 100.0 30 ATTTGATTTG .................................... ATTCATTGTAATACCCTCCAATTGATTTCC 1942170 36 100.0 30 ATTGATTTCC .................................... CATAATTACACCGCCTTTTATTGTTCGATA 1942236 36 100.0 30 TTGTTCGATA .................................... CGGTGTCAATGCTTTGATTTGTGCTGCCAA 1942302 36 100.0 30 GTGCTGCCAA .................................... AAGACAGATGGTTGACCACCATCCATCAAT 1942368 36 100.0 30 ATCCATCAAT .................................... CATATTATATCATTAGCAAATAATCTTCAG 1942434 36 100.0 30 TAATCTTCAG .................................... GGGTTGCGGCATACAAAAAGCCACCCCCGT 1942500 36 100.0 30 CCACCCCCGT .................................... TTTTACAGCAGCGAAAAAGGTGCACGGGAA 1942566 36 100.0 30 TGCACGGGAA .................................... CAACCGCTGAACTGATTCCTTTTCCTGAAG 1942632 36 100.0 30 TTTCCTGAAG .................................... AGCGATGACTGAAACCTGTTGATTCTTGCA 1942698 36 100.0 30 GATTCTTGCA .................................... CAATTCAATATTAAACCAACCCAATTGTTT 1942764 36 100.0 30 CCAATTGTTT .................................... CGGCGAATGACGAAAGCGCAAAAGATTGGG 1942830 36 97.2 AAAGATTGGG ...G................................ CGATTTTTTA ========== ====== ====== ====== ========== ==================================== 16 36 30 GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:69.44%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [58.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [165,30] Score: 0.18/0.18 # # Final direction: F [0.59,0.27 Confidence: MEDIUM] >NC_018631 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1340928 36 91.7 30 GTATATAAGT --...G.............................. CGAATGGTGTTCTTGCTGATGCGACCAATG 1340994 36 97.2 30 GCGACCAATG A................................... ATGCTCAATGAAAACGTTGAAGATGTTAGA 1341060 36 100.0 30 AGATGTTAGA .................................... GCAATTTGCCTTGAAGTCCAATCCGTTTGC 1341126 36 100.0 30 ATCCGTTTGC .................................... GTAGACTTATACACTTGACCTAATGTATTA 1341192 36 100.0 30 TAATGTATTA .................................... TATTCAATCGAAGAAGCACAATACGTGATC 1341258 36 100.0 30 ATACGTGATC .................................... ACGTGATTGATGGCTCAAAGCCAGTTGAGT 1341324 36 100.0 30 CCAGTTGAGT .................................... TCAAGTTGGTAATAGAACTGTTGGCTACTA 1341390 36 100.0 30 TTGGCTACTA .................................... ATACTAGCGTCACTGTTGGCTTTAGCCGTG 1341456 36 100.0 30 TTTAGCCGTG .................................... CAGTGCTTTGCTAGAAGTTCGCGGTTTAAA 1341522 36 100.0 30 GCGGTTTAAA .................................... TGTATGAAACTTAGTAAGTTTAATATAATT 1341588 36 100.0 30 TAATATAATT .................................... ATGAGATTATCACGGAGCTACCGTTATACT 1341654 36 100.0 30 CCGTTATACT .................................... AAGAAGTCAACGCTCCACTGATTGATGTTG 1341720 36 100.0 30 ATTGATGTTG .................................... TTAGAATTATAGGCTCTAATATATATTGCA 1341786 36 100.0 30 ATATATTGCA .................................... TTCAAGTGTCTGGTAGTGGATTAACAGCTT 1341852 36 100.0 30 TTAACAGCTT .................................... TACTAATAAACAGCTTCAACCACGCGTGAA 1341918 36 100.0 30 CACGCGTGAA .................................... AACAACTAGGCAGATTTTTAAAATATTGGC 1341984 36 100.0 30 AAATATTGGC .................................... CCCGTTTCTGGGGCTTGTATACAGAAACGG 1342050 36 100.0 30 ACAGAAACGG .................................... TAATGCTCACTGATTTTTTCCTAAAGTTAA 1342116 36 100.0 30 CTAAAGTTAA .................................... CTAGGCAGTCGTATCAAGCTATGCATGATA 1342182 36 100.0 30 ATGCATGATA .................................... ATGCAAAGGTAGGACAGATTGCTTATTTCT 1342248 36 100.0 30 GCTTATTTCT .................................... AGAATTATAAACTCTAGTCTCGCGCGTTGA 1342314 36 100.0 30 CGCGCGTTGA .................................... CTAGGCAGTTGTATCAAGCTATGCATGATA 1342380 36 100.0 30 ATGCATGATA .................................... ATGCAAAGGTAGGACAGATTGCTTATTTCT 1342446 36 100.0 30 GCTTATTTCT .................................... ACAATGTACTGCTCAAGATAATATGTTTTA 1342512 36 100.0 30 ATATGTTTTA .................................... TCAACTGCTGTCATTGTAACACTACCGATT 1342578 36 100.0 30 ACTACCGATT .................................... AATAAGATAATCTCGTCAAGATTAGTTATT 1342644 36 100.0 30 ATTAGTTATT .................................... ATGTCTCAAACTTCCCTCGGTTATTATGAA 1342710 36 100.0 30 TTATTATGAA .................................... AAGATTATGGGTATGGTAAAGTGGTCTATA 1342776 36 100.0 30 GTGGTCTATA .................................... GATGATACGTTTGACCCTGAAGCCACACTA 1342842 36 100.0 30 AGCCACACTA .................................... TGTATCCTTGCCAAAGTTTGACAATTGACT 1342908 36 100.0 30 ACAATTGACT .................................... AATAACGGCGTTGATTCTAATGTATTAGCA 1342974 36 100.0 30 TGTATTAGCA .................................... GATGATACATTCGACCCACAAATCACACTA 1343040 36 100.0 30 AATCACACTA .................................... ACAACATAGCCACAGAAGTTAAATCATCAA 1343106 36 100.0 30 AAATCATCAA .................................... CGTCTTCTGTTCAATCTGGAATTAGCAAAG 1343172 36 100.0 30 ATTAGCAAAG .................................... CGTGCTGTTTGGAATCGACTAATCAACGGA 1343238 36 100.0 30 AATCAACGGA .................................... TTACCGCCGACCGACAAACATATACAATGG 1343304 36 100.0 30 TATACAATGG .................................... TAATGCTTCAATAGACATATTTATTTACCT 1343370 36 100.0 30 TTATTTACCT .................................... TCGAGTGGTAGTATCTCAGTTGGACAGTTT 1343436 36 100.0 30 TGGACAGTTT .................................... TAGTACCATGGGAGCGCTACCTGTGTCCCC 1343502 36 100.0 30 CTGTGTCCCC .................................... AACGATAGGCGTAAGCACTAGACAAAACTA 1343568 36 100.0 GACAAAACTA .................................... AGACCGCCTG ========== ====== ====== ====== ========== ==================================== 41 36 30 GGTTTAAACCTCATTGATCTGACACACATCTGAAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [76.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [12,20] Score: 0/0.18 # # Final direction: R [0.27,0.78 Confidence: MEDIUM] >NC_018645 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1127872 30 100.0 35 GGCTCTAAGG .............................. ATTTTCTGGGGGCACAACGGTAGAAATGGGAAAAG 1127937 30 100.0 36 ATGGGAAAAG .............................. TACATTAATAGTTCTGAATTGCAGCAAAAATTTGAA 1128003 30 100.0 36 AAAATTTGAA .............................. TGACCACGGATTATGGATCATCATAAATGCATTTTC 1128069 30 100.0 36 ATGCATTTTC .............................. ATGTAAAAGCAAAATTAAACGAACGAGGTAAAGCCT 1128135 30 100.0 GGTAAAGCCT .............................. ACAAGCTGCT ========== ====== ====== ====== ========== ============================== 5 30 35 CTTTTAATCAGACCAGTGTGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.00,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [131,228] Score: 0/0.18 # # Final direction: F [4.87,0 Confidence: HIGH] >NC_018642 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 2104090 25 100.0 53 NNNNNNNNNN ..............GG......A.. CCAGCTCTTCAAGGCTAGTACATTTTTCAAACATGGACTGCATAGTAGTTACT 2104168 25 100.0 53 NNNNNNNNNN ......................... CTAACTCTTCAAGTGAGCTGCACTCAAAAAACATGGACTGCATAGTAGTTACT 2104246 25 100.0 53 NNNNNNNNNN .....A................... CTAACTCTTCAAGGCTATTACAAGCAACAAACATGGCCAACATAGTAGTAACG 2104324 25 100.0 53 NNNNNNNNNN .................G....... CCAATTTCTCAAGTGCTCTACAGGAACTAAACAAGGCTGACATATTAGTAACG 2104402 25 100.0 53 NNNNNNNNNN ......................... CTAATTCTTTAAGACTGGTACTATTAACAAACATGCCTCCCATATTAGTAACG 2104480 25 100.0 53 NNNNNNNNNN ......................... CCAATTTTTCAAGTGCTTTACAATCCCTAAACATATGATACATATCATTCACA 2104558 25 100.0 53 NNNNNNNNNN ......................... TCAATTTCTCAAGTGATTCACAGTATCCAAACATGCTATTCATACTATTAACG 2104636 25 100.0 1 NNNNNNNNNN ...........C..G..G....A.. NNNNNNNNNN ========== ====== ====== ====== ========== ========================= 8 25 53 GAACTCGTATCAAAATTACTTACAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [978,1006] Score: 0/0.18 # # Final direction: NA [0,0 Confidence: NA] >NC_018645 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1120959 30 100.0 35 TTTTTGATGG .............................. CTGGTTATCAGAAGTGTTATGGACGGGGGGACCGT 1121024 30 100.0 35 GGGGGACCGT .............................. TAGTGTATGACGAGTACTTATATGCTATTGTACCG 1121089 30 100.0 36 TATTGTACCG .............................. TTTTTCAATAACTCCTTAATTTTACGTTCATTATTT 1121155 30 100.0 37 TTCATTATTT .............................. ATGTGTCAGCTGACACAGAACGAGAAGGATGGACAGA 1121222 30 100.0 37 GATGGACAGA .............................. GATTGAATCTAATAAACTGGCCTTAGATATTGTAAGC 1121289 30 100.0 36 TATTGTAAGC .............................. AACTGCCACGCCTCATTATCAAACTCATACTCTGAT 1121355 30 100.0 37 ATACTCTGAT .............................. TTCTGTGCTGTTGATTGGTGTGTTTATGATATCCATT 1121422 30 100.0 36 GATATCCATT .............................. AACTCCTGCTTAAGCGCCTTTGACTTTGCAAATTCT 1121488 30 100.0 36 TGCAAATTCT .............................. TAAGCACATTCACCCCAAACAACATCACCAGTTGTC 1121554 30 100.0 36 ACCAGTTGTC .............................. GTGGAAAACCCAGGCGGCGACCGGATACAAATAACT 1121620 30 100.0 35 ACAAATAACT .............................. ATAACTCATTGAGTTTATTCCTGAAGCAGCCACGG 1121685 30 100.0 37 GCAGCCACGG .............................. CCCCTTGTAAAGGATGGACAGAAACTCGAAGCAAAAG 1121752 30 100.0 36 GAAGCAAAAG .............................. CTGTAACCTGACTCATATCAATTGCCGTCTGGGGCG 1121818 30 100.0 36 GTCTGGGGCG .............................. AGATTCTCAGAGATGGTACGCTTGTCAATCTTGGTT 1121884 30 100.0 37 AATCTTGGTT .............................. AGCGTTGGGAGGATGAGGCCGCGCTCGTTATTCAGGG 1121951 30 100.0 35 TTATTCAGGG .............................. AATAGTTCTGGGTATTTTTCCCGCGTCCGGCGTAG 1122016 30 100.0 35 TCCGGCGTAG .............................. TTCCGACATGGCGGTATCAGCTAACCTGCAACCAT 1122081 30 100.0 36 CTGCAACCAT .............................. AGTGTTTGTTCTTCGTCACCTCCAGAATCTTGAGAC 1122147 30 100.0 36 ATCTTGAGAC .............................. ATCAAAAAACCACTGGTCACTTTATAATCTCTCGGA 1122213 30 100.0 37 ATCTCTCGGA .............................. TGATATGCAAAATAATCAAGTACTTCTTTAGATCCCT 1122280 30 100.0 36 TTAGATCCCT .............................. TTATGATTTCAAAATCCTTGTAATTGCTCGAAATAA 1122346 30 100.0 38 CTCGAAATAA .............................. TTTTGCATCTCTTTTTCTTGCTCATGACTTTTTATCTC 1122414 30 100.0 36 TTTTTATCTC .............................. GCATTTCTCTGTTGAAAACTAAAAACTTTCCTTCAT 1122480 30 100.0 36 TTTCCTTCAT .............................. AATTTTATCGCCATAGTGACGATGGGTATCAAAATA 1122546 30 100.0 36 TATCAAAATA .............................. CATAATTATTCCTTTGGTACAAGCATTGTCATATCA 1122612 30 100.0 37 TGTCATATCA .............................. TTTTATGTGAAAATTACTTTTAACGGAAAAGAGCCTA 1122679 30 100.0 36 AAAGAGCCTA .............................. ATCCATAGTGGAGAAACGCATCATAGGGCAACTATA 1122745 30 100.0 35 GGCAACTATA .............................. CTTGAAGGGCAAGCCAATCCAGCAATTGACATGCC 1122810 30 100.0 34 TTGACATGCC .............................. TTAAAAGGGCCAGTAGCAAAATCAGGAACGGGCA 1122874 30 100.0 35 GGAACGGGCA .............................. TGCTGATACCCACCCTGCTGGTTCTGCTGGCCCTG 1122939 30 100.0 35 GCTGGCCCTG .............................. TAATTAACTTTTGAATTGGAAAAAAAATATGACAT 1123004 30 100.0 34 AATATGACAT .............................. CAATAACCCATTTTCTTAGTGACCCACCAAGAAG 1123068 30 100.0 35 CACCAAGAAG .............................. ATACTCTGCGCTTTGACATTTATCTTCGCTAAATT 1123133 30 100.0 36 TCGCTAAATT .............................. TAAAATCAGTATAATCAGTAATGGCAGGTTCGATAA 1123199 30 100.0 36 GGTTCGATAA .............................. CGAAGAAACTCAAACCATATTGAATTTGTCAACAAA 1123265 30 100.0 36 TGTCAACAAA .............................. ACGGTTGATAGATTCCCTGTTCCTGGCTTTGCTACT 1123331 30 100.0 38 CTTTGCTACT .............................. TTGGTACATTAAGATATTTAATCATTTCTACCTCTCTT 1123399 30 100.0 37 TACCTCTCTT .............................. AGGCTTGTATTGACTGTATCAATTGCAAGAGATCCTT 1123466 30 100.0 37 AGAGATCCTT .............................. TCCATTATATTCAATTCAGCAGCGGTTGCCGTAACCT 1123533 30 100.0 35 GCCGTAACCT .............................. TGACGTAGTGACTAATTTCCCGACCTTGTTGACTT 1123598 30 100.0 37 TTGTTGACTT .............................. TGTTATAGTATTACAACATGGGTTTATTATTTTATTA 1123665 30 100.0 36 TATTTTATTA .............................. TGAGACAATGAAACTTTAATGTCTTGGATCTGCATA 1123731 30 100.0 36 GATCTGCATA .............................. TTATTAATCTTTAGTTTTTGAATGGCTCCGAGAAAA 1123797 30 100.0 35 TCCGAGAAAA .............................. TTCGGGAAAAAGAAATTCATGGCAGGTGGCGAAGT 1123862 30 100.0 35 GTGGCGAAGT .............................. ACATCGCAAAGCGGCCTTACTTCAGCCATATCAAA 1123927 30 100.0 37 CCATATCAAA .............................. AAGGGAACATTGCTTTTTTACCACCAACAATAAAATA 1123994 30 100.0 35 CAATAAAATA .............................. ATGTCCTGTAAGCCAGTCCCGATATTTTGAACATT 1124059 30 100.0 36 TTTGAACATT .............................. AACGGTGAAGTGGTAGAAAAAAAGATAAAAAAGCAC 1124125 30 100.0 35 AAAAAAGCAC .............................. ACTTGTACCAATATTTTTCGTGTCAATCAGCTCGT 1124190 30 100.0 35 ATCAGCTCGT .............................. TGTGGTGAGATGCTCTTGTTTACAAGATATTGATG 1124255 30 100.0 37 GATATTGATG .............................. CCAATACCCCGGTTGATCGCATCGAGATAATCACCAA 1124322 30 100.0 38 TAATCACCAA .............................. TTCGCTGTTTTCAGTCCACCACTGTTGGAATAACACGT 1124390 30 100.0 36 AATAACACGT .............................. AGGTTTGCGCGACGTGGAAAATTTACCGTGACATAT 1124456 30 100.0 37 CGTGACATAT .............................. TTTGGAGGGCAAACAGGAGACTCAAGGAAAAGCTGTT 1124523 30 100.0 36 AAAAGCTGTT .............................. CGAAACAGACGTGTGGGCGCTAATCGAAAAAATCAA 1124589 30 100.0 36 AAAAAATCAA .............................. TTGTAAGATTGAAAAACCTGTTTCAGAGTTTTACAA 1124655 30 100.0 36 AGTTTTACAA .............................. TAATATCCTATTTTTTTGGTGATCCACCAAGAAGTT 1124721 30 100.0 38 CCAAGAAGTT .............................. ATACTAAAATACAAACGAATAAATATCCACATTGCCAT 1124789 30 100.0 36 ACATTGCCAT .............................. TAATATCCTATTTTTTTGGTGATCCACCAAGAAGTT 1124855 30 100.0 25 CCAAGAAGTT .............................. ATACTAAAATACAAATGCTTTTCTG 1124910 30 100.0 35 TGCTTTTCTG .............................. ACGGAATAACCAGAGATATTTCTCAAAACGCAATA 1124975 30 100.0 37 AAACGCAATA .............................. AGGATAAGCGGATTGCATTCAAGCAGTATGGACCAAA 1125042 30 100.0 36 ATGGACCAAA .............................. GTATCCACGGCGTATGGGTCAGATAATGCTTTTCTG 1125108 30 100.0 35 TGCTTTTCTG .............................. ACGGAATAACCAGAGATATTTCTCAAAACGCAATA 1125173 30 100.0 35 AAACGCAATA .............................. ATGGTTCCAATAAGCTTTAGAACGGCCTCTTTCAA 1125238 30 100.0 34 CCTCTTTCAA .............................. TAGGGATGTTCCGACCATTGAACAATTAGAATGG 1125302 30 100.0 36 ATTAGAATGG .............................. GCAGAAACCAAATAGCCGATGAATCAGACACGTTTG 1125368 30 100.0 36 GACACGTTTG .............................. GGTTATAGAGTATATGATCCATGTTTTTTATACCAG 1125434 30 100.0 TTTATACCAG .............................. GTAAGCGATG ========== ====== ====== ====== ========== ============================== 69 30 35 CTTTTAATCAGACCAGTGTGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.00,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [130,39] Score: 0.18/0.18 # # Final direction: F [5.32,0 Confidence: HIGH] >NC_018645 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3489798 37 100.0 37 AAGAAATGAA ..................................... CAGCAAGCTTAAGGGGCGAGGCATTAAAATAGTTGTT 3489872 37 100.0 37 AATAGTTGTT ..................................... CAGCCAACTATCTGGGTATGAATATTGCCGAAATGTT 3489946 37 100.0 36 CCGAAATGTT ..................................... CCAAGTCGCCTTTATCAACGGTGATCGTCGGCTCTG 3490019 37 100.0 35 GTCGGCTCTG ..................................... ATGTCGGTGAGGGCCTGATTTTCGAGACTCGTGTG 3490091 37 100.0 36 GACTCGTGTG ..................................... CCGGAAGGCCGCCACCCTCAGCGGTTGTTGAGTTCG 3490164 37 100.0 37 GTTGAGTTCG ..................................... AACCTGGGGCGGCTTGTATAGCGCCCAAACCCATAAG 3490238 37 100.0 36 AACCCATAAG ..................................... TGAGTTGATAAAAAACCGCACTGTAATTTTCAGCAA 3490311 37 100.0 36 TTTTCAGCAA ..................................... CATGCTGTAATCTGTTCCGGTGTTGTCCAATTCACA 3490384 37 100.0 CCAATTCACA ..................................... TGTGTCAATC ========== ====== ====== ====== ========== ===================================== 9 37 36 GTCTGAACGGCATATCCAGAAGAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.10,-2.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [83.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [160,300] Score: 0/0.18 # # Final direction: F [4.77,0.37 Confidence: HIGH] >NC_018651 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================ ====== 62058 16 100.0 66 CTGATAGAAC ................ GTTTTATTGAGGAATTTTTGTTTGGATATGCTATCAGCGGTAATTAATGGCATATGTCAGACATTC 62140 16 93.8 54 TCAGACATTC ........C....... AATTTTGTTCTGGTTATACCCATACCGGTACACATTATTCATGCAATGTCTTAA 62210 16 100.0 71 AATGTCTTAA ................ AAAAAATCGAGTAAAGTATGCTGTGAGCGGTGAGATAGACTCTCGATATGCTATCAGCGGTAGTTGATTGT 62297 16 100.0 AGTTGATTGT ................ GACGACTATG ========== ====== ====== ====== ========== ================ 4 16 63 GTATGCTGTCAGCGGT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [279,49] Score: 0.18/0.18 # # Final direction: R [0.18,0.78 Confidence: MEDIUM] >NC_018646 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 941238 36 100.0 31 NNNNNNNNNN .................................... ACGAGTAAATGGTTTCATCGCACGACTTACG 941305 36 100.0 30 NNNNNNNNNN .................................... AATGCGTTCATTTTGTAAGAAATCTATCAA 941371 36 100.0 30 NNNNNNNNNN .................................... ATGTTGTAGAATCATATCGACCATATAACC 941437 36 100.0 30 NNNNNNNNNN .................................... GCTTGGTCTCGAAGAATTACAGAAGAACAT 941503 36 100.0 30 NNNNNNNNNN .................................... CAATTGATTGCCGTTAAAACCGATAGAGGA 941569 36 100.0 30 NNNNNNNNNN .................................... AAGTGCCACAGTTTGTGGCTGATTGGATTG 941635 36 100.0 30 NNNNNNNNNN .................................... CATTCAAGGACTACCCTCAACAGTAACTCT 941701 36 100.0 30 NNNNNNNNNN .................................... TCTTCTTTTTAATTCTTCTAACACTCCATC 941767 36 100.0 30 NNNNNNNNNN .................................... ATCTTCTTTTGACCTAACAAAAGGATATGT 941833 36 100.0 1 NNNNNNNNNN ...................ATT.TGCTAGGAC.TCA NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 10 36 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.20,-0.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [102,256] Score: 0.18/0.18 # # Final direction: F [0.78,0.45 Confidence: LOW] >NC_018709 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1448528 36 100.0 30 NNNNNNNNNN A................................... ATAATTTCTAATTTCATTTATAACCTTTCA 1448594 36 100.0 30 NNNNNNNNNN .................................... TAGTAGCTAAGAATAAAATAAGAAACACTG 1448660 36 100.0 30 NNNNNNNNNN .................................... GTTGGAATGCTTAAGCAGGGGTGGAGTGAA 1448726 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 4 36 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:77.78%AT] # Reference repeat match suggestion: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [121,146] Score: 0/0.18 # # Final direction: R [0.5,0.68 Confidence: LOW] >NC_018664 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2343012 30 100.0 31 ACGCTACAAA .............................. AAGAGTACACTTCTTAGATCATTATTGACAC 2343073 30 100.0 35 TTATTGACAC .............................. TCTTGCGACTGGAAATCCACTTATCAAGGAGAAAA 2343138 30 100.0 35 AAGGAGAAAA .............................. TATTGATACTACTTTTTCTTTTACCTTAAATGCTA 2343203 30 100.0 37 TTAAATGCTA .............................. AATATCGAATCTAAATCCATTTCTCACGTCTACATTG 2343270 30 100.0 38 GTCTACATTG .............................. AATTACAGTTTGTACAAGTTTTGATATTTTTAATTATA 2343338 30 100.0 37 TTTAATTATA .............................. ACGTCTAGACGTCTATGTTATATAATTATAAATAAGG 2343405 30 100.0 38 ATAAATAAGG .............................. AAGAAAAGAAATTTTACGAACACTTGATTCTTGTAAGG 2343473 30 100.0 36 TCTTGTAAGG .............................. AGAGACTGGGGTTCTAATGCTAAGAAAAGAATGGAT 2343539 30 100.0 36 AAGAATGGAT .............................. AGTTGTTCAGCTTAGAGCTGAAGGTCTGTGGCTTTA 2343605 30 100.0 TGTGGCTTTA .............................. CCGTTATTCTG ========== ====== ====== ====== ========== ============================== 10 30 35 ATTTACATTCTACTCTAGTTCTATTAATAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1361,302] Score: 0.18/0.18 # # Final direction: F [0.18,0 Confidence: MEDIUM] >NC_018712 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1167166 36 100.0 30 CTTATGAGTA .................................... GTATCATGGAAGTCTACCAATATCATGTTT 1167232 36 100.0 30 TATCATGTTT .................................... TCTCCTCGATCACAATCTCCCATGGCCTGA 1167298 36 100.0 30 CATGGCCTGA .................................... AAATATCTTTTCGAGTATCTAATTCATCTA 1167364 36 100.0 30 AATTCATCTA .................................... CATTATAAGCAAGCACTGCATCTCTATTTT 1167430 36 100.0 30 TCTCTATTTT .................................... GCTGGAACATTGTGTCAACCAAGCAGTCAA 1167496 36 100.0 30 AAGCAGTCAA .................................... TCTTGGGAGTTTTTATTTTGTAATAAACCA 1167562 36 100.0 TAATAAACCA .................................... CTCGTAGACT ========== ====== ====== ====== ========== ==================================== 7 36 30 GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.89%AT] # Reference repeat match suggestion: R [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 97% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [0.00,-2.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [183,104] Score: 0/0.18 # # Final direction: R [0,0.87 Confidence: HIGH] >NC_018664 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 704762 30 100.0 36 NNNNNNNNNN .............................. ATTCTTTAATTCTCTATATTTTTTTTGCTTATACTC 704828 30 100.0 36 NNNNNNNNNN .............................. ACTCCTAATAATTCTATAGCTTCTTTTAGTTGTTCG 704894 30 100.0 37 NNNNNNNNNN .............................. ATTTTTTCAAAATCATATTTTGCAGTAAGGCCATTTG 704961 30 100.0 36 NNNNNNNNNN .............................. GGATAAACACTAGCCAAATGACTAGGAGAAAAAACA 705027 30 100.0 36 NNNNNNNNNN .............................. TTCATTGCCATCTCTGATGAAGCTAATGTACTTATC 705093 30 100.0 37 NNNNNNNNNN .............................. ATCCATCATACAATTCATCAAATGTAAATTGATCCTT 705160 30 100.0 37 NNNNNNNNNN .............................. GTTAGAATTGATGAATTATCAAGACAGGATCTTGACG 705227 30 100.0 36 NNNNNNNNNN .............................. CCACATTAGAGGTTTAATTGATAAGGTGCATACTTT 705293 30 100.0 37 NNNNNNNNNN .............................. CTTGAAAGAGATTTTAATTGTCTCTTTGCTTCTTGAA 705360 30 100.0 36 NNNNNNNNNN .............................. AAAATTTAAACACCCACTAAGTCTTTCATACTTACT 705426 30 100.0 37 NNNNNNNNNN .............................. ATGATAGAGATGAAATGTTGAATATCAAATCTTACTT 705493 30 100.0 36 NNNNNNNNNN .............................. ACATTAACTAAAGAATCTAAAAAACTTCTTGCAAAG 705559 30 100.0 36 NNNNNNNNNN .............................. TCTATTGAATTTCTGAAAAGATTTATTCATTTTATC 705625 30 100.0 36 NNNNNNNNNN .............................. TAAAAATAATAAGTAATTTATTTTATTTTCATATTA 705691 30 100.0 36 NNNNNNNNNN .............................. CTTTCTAAGTTGGTGAATTTATCAGTACCAAACATC 705757 30 100.0 37 NNNNNNNNNN .............................. AGTTTTACGATATATACTGAAGAAGAGCCACGAGAAG 705824 30 100.0 37 NNNNNNNNNN ..........C................... AATCGAATAGGCATAATAAATAGCAATAGCAACAAGC 705891 30 100.0 37 NNNNNNNNNN .............................. ACGGAGATGGGGGAGACCCCCAAACCCCTGTTTTTTA 705958 30 100.0 36 NNNNNNNNNN .............................. TTCTTTTAAATAGATTTAGTCCAAGTGCTATTATTA 706024 30 100.0 36 NNNNNNNNNN .............................. ATGCAACGAATGCTATAATCTTTCATTTCTGATATC 706090 30 100.0 36 NNNNNNNNNN .............................. ATATAGTAAAACATCATTCTTCCTTGACAACTGATT 706156 30 100.0 37 NNNNNNNNNN .............................. AAAGTAGAGTGGTATACTCCTAAATCAGGATTTTCAT 706223 30 100.0 37 NNNNNNNNNN .............................. TTGGTAAAGCAATGATAGGTATACTCTCTGTTTTTGC 706290 30 100.0 37 NNNNNNNNNN .T............................ ATTGATTTTTGATAAGTGTTCTCTATATAAATTCTTC 706357 30 100.0 39 NNNNNNNNNN .T............................ AAATTTAGAAAAGTAGATAGAGCTAACTTAACCGTATTT 706426 30 100.0 36 NNNNNNNNNN .T............................ ATGGGTGACACCACAGGACTTTTCTAGAGGTTTCTA 706492 30 100.0 37 NNNNNNNNNN .T............................ TTCCACATAGTAGAAAATAGTGTACTTCTCAGACCAC 706559 30 100.0 38 NNNNNNNNNN .T............................ GCTAAATATCCTAGTAAATATGGGACTGCTCTATCTCC 706627 30 100.0 37 NNNNNNNNNN .T............................ ATATATGAGCAATGTGAAGTAATGCAATCCATATTCG 706694 30 100.0 37 NNNNNNNNNN .T............................ GAAGATTTGAAGAAACAAACTAAACAATTTATAGAGG 706761 30 100.0 36 NNNNNNNNNN .T............................ TTACTATAGCAAGGTCTAAAGCTTTGGCAATTGCTC 706827 30 100.0 38 NNNNNNNNNN .T............................ TCGATTTTTTCTAGTATTGGATCTTTAGGTTGAGATTG 706895 30 100.0 36 NNNNNNNNNN .T............................ TTTGGACAAGGTTATAAGTCTATGTCACCAGTAATC 706961 30 100.0 1 NNNNNNNNNN .T.............C.A............ NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 34 30 36 GCATTAATAGAACTAAAGTAGAATGTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [187,152] Score: 0/0.18 # # Final direction: F [0.41,0.27 Confidence: LOW] >NC_018686 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================================================== ====== 16801 56 89.3 19 TGATGCAAAA .....T.T...G.................G.....G.....T.............. TGAAGCGGTAGAACAAACG 16876 56 100.0 25 AGAACAAACG ........................................................ TGAAGCGGTAGAACAAACTGCAAGG 16957 56 98.2 25 AACTGCAAGG .........................................T.............. TGAAGCGGTAGAACAAACTGCAAGG 17038 56 100.0 25 AACTGCAAGG ........................................................ TGAAGCGGTAGAACAAACTGCAAGG 17119 56 100.0 AACTGCAAGG ........................................................ ========== ====== ====== ====== ========== ======================================================== 5 56 23 GCAGGAGCAGCAACAGTACAACGTGATGTAAATGTACAAAACAATGTAAGAGGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.71%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.60,-6.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2639,632] Score: 0.18/0.18 # # Final direction: R [0.45,0.78 Confidence: LOW] >NC_018691 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3933777 28 89.3 32 CGATCCAGTA ...T..G.......A............. CTGTACACGGTGCGCGGGATCATCAACCGCTG 3933837 28 100.0 32 TCAACCGCTG ............................ GCGCCGAACGTCAAGTCGCGCCGCGCGGACAT 3933897 28 100.0 32 GCGCGGACAT ............................ CGAAAACGGCCTGCAACATCGTCTCGGCCCCT 3933957 28 100.0 32 CTCGGCCCCT ............................ TACTTGGTGGTGGCGTCTTGGCCGAAGCGAGT 3934017 28 100.0 32 CGAAGCGAGT ............................ ATATCCACCAGGGTGACACCGTCATCCTGCGT 3934077 28 100.0 32 CATCCTGCGT ............................ CTTGTTGGCGGCCTTTGGTGTCAGCGCTGTGA 3934137 28 100.0 32 AGCGCTGTGA ............................ ATACGGGACTTTTGCGCCGACTTGGCGCCGAT 3934197 28 100.0 32 TGGCGCCGAT ............................ AGGTAAAAATTCGCGCCGTGCGTCCGGCTTCT 3934257 28 100.0 32 TCCGGCTTCT ............................ ATTGAAGCGATGGCGCTGGAGCGTCACATGCT 3934317 28 100.0 32 GTCACATGCT ............................ GTGGACCGCCGCAGCAACACAATCGGCTGATA 3934377 28 100.0 32 TCGGCTGATA ............................ CTTATAGGGGTGGGAACGCCGACTCTCCCCGA 3934437 28 100.0 32 CTCTCCCCGA ............................ GCATGAGGCCGGCATAGATGCCGCCTTGCTCT 3934497 28 100.0 32 GCCTTGCTCT ............................ TTATCGTTGCCGCCGAAACTCTTTATCAAGAA 3934557 28 100.0 32 TTATCAAGAA ............................ CCCCTGCCCGTCCCATACACCGGACACGTAGT 3934617 28 100.0 32 GACACGTAGT ............................ AAAAAAGCCCGGACGGTGCCGGGCCAGTAGGC 3934677 28 100.0 32 GCCAGTAGGC ............................ GACCCCGATCAGCTTACCCCATTCCACCAGTG 3934737 28 100.0 32 TCCACCAGTG ............................ AGAGGGCTTTTCCTGCTTTCGGTCTACCTTAA 3934797 28 100.0 32 TCTACCTTAA ............................ CCAAGTCCCTTCGCCAGAGGGCCTGTACCCGT 3934857 28 96.4 33 CTGTACCCGT ...........T................ AGCCGGCGACCAGCACGAAAGCCACCGTCGCGG 3934918 28 100.0 32 ACCGTCGCGG ............................ CCTTTCGGAATCCCGGTTCCGCCGGGGCGGGT 3934978 28 100.0 32 CGGGGCGGGT ............................ GGGAACAGGCGATGACTTTACTCTCCTGTATC 3935038 28 100.0 32 CTCCTGTATC ............................ CCGTTGGCTCAGCCCCATGCGTGCCCGCCATT 3935098 28 100.0 32 GCCCGCCATT ............................ TATGGGGTGCGAGCGTCGGTTCATGGCTCGAC 3935158 28 100.0 32 ATGGCTCGAC ............................ TTGAAGGAGATCCCTTCTTTGTCGCGGGAACA 3935218 28 100.0 32 CGCGGGAACA ............................ TCCTGGTCAGAATTTGGAGCTGGCATCGTTCA 3935278 28 100.0 32 GCATCGTTCA ............................ GACCTGCACGGCGCAGAACAAGAGCCCAATGA 3935338 28 100.0 32 AGCCCAATGA ............................ TATGTGCCGCGCAACCCGCGCACGGATATCCT 3935398 28 100.0 32 CGGATATCCT ............................ CAGGTCGGCCCCTTCCAGGTAGGCCCCTTCCA 3935458 28 100.0 32 GCCCCTTCCA ............................ GGCATAGGTCGGAGACGGTGAAGTGCGTTGTG 3935518 28 100.0 32 GTGCGTTGTG ............................ GCCGACTGGTCCGCGCTGGCGGGCCGCAAGGT 3935578 28 100.0 32 GCCGCAAGGT ............................ ACGATCATGGTGCACATCGTCCGTCAGCTCCT 3935638 28 100.0 32 GTCAGCTCCT ............................ GGGCCTTGGTCGGTCCTACTGGATCGGTGGTG 3935698 28 100.0 32 ATCGGTGGTG ............................ AGAAGTCGCTCCCGAAACCGCGCCTGCTGTAC 3935758 28 100.0 32 CCTGCTGTAC ............................ CTGGACGAGAACCAGTTCGACCAGGTGTTCCA 3935818 28 100.0 32 AGGTGTTCCA ............................ CCCTCGATGACGCTCCAGAATCCGTCGTCAGT 3935878 28 100.0 32 CGTCGTCAGT ............................ TCGGATGGCACCTCAGGCGAGCGTTCGGCCAT 3935938 28 100.0 32 GTTCGGCCAT ............................ TGGGCATCTACGTGCCGCCCACGGGGCAGGAT 3935998 28 100.0 32 GGGGCAGGAT ............................ GCGTGATGCTGCAGGCGGTCGCGCATTTCCTT 3936058 28 100.0 32 GCATTTCCTT ............................ AGGGCTACGCCAGTACCTGGCGATAGAATTCT 3936118 28 100.0 32 ATAGAATTCT ............................ ACAAGGATAGATTCAAGGAACGATCCCCTAGA 3936178 28 100.0 32 ATCCCCTAGA ............................ TGCTGCTGCGCAGACTGAGTCCGATGTGATTT 3936238 28 100.0 32 GATGTGATTT ............................ TAGTCGCCCGATGGCGGCGGCTCATTGTCGTT 3936298 28 100.0 32 CATTGTCGTT ............................ CTCCACAAAGCCGGACTGCTGGACGACGTTAT 3936358 28 100.0 32 ACGACGTTAT ............................ TTGCCGTTGCTGATTTTCTCACCGTCGAATCT 3936418 28 100.0 32 CGTCGAATCT ............................ ATCATCTGCACGGGGCAGCGGGTCCAGATGCT 3936478 28 100.0 32 TCCAGATGCT ............................ GGGGCCCGCGAGTTCCGTGGCATGCGTCTGGT 3936538 28 100.0 32 TGCGTCTGGT ............................ TTCAGCACGACCGGGTCGCCAGCATCCTCAGT 3936598 28 100.0 32 CATCCTCAGT ............................ CACGATACGCCCGAAGGCCACGACGCATGTTT 3936658 28 100.0 32 ACGCATGTTT ............................ ACTGCCGGTGCGCAGGTGTGGCCGGCGGATTG 3936718 28 100.0 32 CGGCGGATTG ............................ TGGCGGGTGCTTCACATGATTGATAACCAACT 3936778 28 100.0 32 ATAACCAACT ............................ CAGGCCTGAGCGCGTGGAACTGTAATTGCTCT 3936838 28 100.0 32 TAATTGCTCT ............................ TTCACCGTGCAACGGGTCGGCGAATCCAACCA 3936898 28 100.0 32 AATCCAACCA ............................ TTCCATCCCGTCGCCTGTCGGCCGACCTTGTC 3936958 28 100.0 32 CGACCTTGTC ............................ ATGCCCTGCCCTGTACTGGGCGCCGGGGGCAA 3937018 28 100.0 32 CCGGGGGCAA ............................ TTGATCGGCGTACATTCCCAAAGGTAGCCAAC 3937078 28 100.0 32 GGTAGCCAAC ............................ AGGAATGCACGCTGAATCTGGACGCACTGAAT 3937138 28 100.0 32 CGCACTGAAT ............................ TGGCGGGCTTTGGATGGCACTGGGCGACGACC 3937198 28 100.0 32 GGCGACGACC ............................ ATCCAGGCGACCGGATTGAGATCACCGGGCAG 3937258 28 100.0 32 CACCGGGCAG ............................ GACTCTTCCAGATCCGTTTCCCGGATCGCCTT 3937318 28 100.0 32 GGATCGCCTT ............................ CTCCATTCCAGGTGCAGGGTGGAAACCTCGTA 3937378 28 100.0 32 AAACCTCGTA ............................ CTCAGCGTAGGCGCGAGTCACGCTGCCGGTGT 3937438 28 100.0 32 CTGCCGGTGT ............................ AACAAAGAGCCGGGCATGCAGTCCATCTACCT 3937498 28 100.0 32 CCATCTACCT ............................ TCTGGATCATTCATCCATCCAATGGCTTCGGT 3937558 28 100.0 TGGCTTCGGT ............................ TAGAACCAAA ========== ====== ====== ====== ========== ============================ 64 28 32 TTTCTTAGCTGCCTGCGCGGCAGCGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [33.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [77,131] Score: 0/0.18 # # Final direction: R [0,1.42 Confidence: HIGH] >NC_018704 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 2106882 19 100.0 22 NNNNNNNNNN ................... GGTGTGGTGCGAATTTTCTTGA 2106923 19 100.0 22 NNNNNNNNNN ................AC. GTTTATGTGCGATATTTTGAAT 2106964 19 100.0 22 NNNNNNNNNN ................... CAAGTGGTGCGATTTTTCTTGA 2107005 19 100.0 22 NNNNNNNNNN ................... CAAGGAGTGCGAAATCCGGGAA 2107046 19 100.0 1 NNNNNNNNNN ...A............CCG NNNNNNNNNN ========== ====== ====== ====== ========== =================== 5 19 22 TTGGGTGCGTTCGCACTAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.40] Score: 0/0.37 # Array degeneracy analysis suggestion: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [376,71] Score: 0.18/0.18 # # Final direction: F [0.59,0.37 Confidence: LOW] >NC_018693 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 2820385 24 100.0 21 NNNNNNNNNN ..GC.................... CGAGGTAACACGGGCGCTACC 2820430 24 100.0 21 NNNNNNNNNN ...........G............ CGAGGTAACACGGGCGCTACC 2820475 24 100.0 21 NNNNNNNNNN ........................ CGAGGTAACACGGGCGCTACC 2820520 24 100.0 21 NNNNNNNNNN ..T........G............ CGAGGTAACACGGGCGCTACC 2820565 24 100.0 21 NNNNNNNNNN ........................ CGAGGTAACACGGGCGCTACC 2820610 24 100.0 21 NNNNNNNNNN ..T........G............ CGGGGAACCAGGGGCGCTACC 2820655 24 100.0 21 NNNNNNNNNN ........................ CGAGGTAACACGGGCGCTACC 2820700 24 100.0 21 NNNNNNNNNN ........................ CGAGGTAACACGGGCGCTACC 2820745 24 100.0 21 NNNNNNNNNN ........................ ACTGGACCTCGAGGTAACACG 2820790 24 100.0 21 NNNNNNNNNN ........................ CGAGGTAACACGGGCGCTACC 2820835 24 100.0 21 NNNNNNNNNN ........................ CGAGGTAACACGGGCGCTACC 2820880 24 100.0 21 NNNNNNNNNN .................G..G... CGGGGTAACACGGGCGCTACC 2820925 24 100.0 48 NNNNNNNNNN ........................ CGAGGTAACACGGGCGCTACTGGACCTACTGGACCTCGAGGTACCGCG 2820997 24 100.0 21 NNNNNNNNNN ......G.C..CG.......G... ACTGGATCTCGAGGTAACACG 2821042 24 100.0 21 NNNNNNNNNN ....G...C..CG........... CCTGGACCTGGAGGTGCACCG 2821087 24 100.0 21 NNNNNNNNNN .T......A..CG........... ACGGGGCCTCGGGGTAACACG 2821132 24 100.0 21 NNNNNNNNNN ........C..TG.......G... ACTGGACCTCGAGGTAACACG 2821177 24 100.0 21 NNNNNNNNNN ........C..CG........... CCTGGACCTCGAGGTAACACG 2821222 24 100.0 21 NNNNNNNNNN ........C..TG.......G... ACTGGACCTCGAGGTAACACG 2821267 24 100.0 21 NNNNNNNNNN ........C..CG........... ACTGGACCTCGAGGTAACACG 2821312 24 100.0 21 NNNNNNNNNN ........C..CG....G..C... ACTGGCCCTCGAGGTAACACG 2821357 24 100.0 21 NNNNNNNNNN ........C..TG.......G... TCTGGACCTCGAGGTAACTCG 2821402 24 100.0 21 NNNNNNNNNN ........C..CG.......C... ACTGGATCTCGAGGTGCCACG 2821447 24 100.0 21 NNNNNNNNNN ........C..CG.C......... ACTGGACCTGGAGGTAACACG 2821492 24 100.0 21 NNNNNNNNNN ........C..TG...A...G... ACTGGACCTCGTGGTGCCACG 2821537 24 100.0 21 NNNNNNNNNN ........C..CG........... ACTGGACTTCAAGGTAACACG 2821582 24 100.0 21 NNNNNNNNNN ..G.....C..TG.C.....G... ACTGGATCTCGAGGTGCCACG 2821627 24 100.0 30 NNNNNNNNNN ........C..CG.......G... ACTGGACCTACTGGACCTGGAGGTAACACG 2821681 24 100.0 21 NNNNNNNNNN ...............C....C... CGAGGTGACTCGGGCGCTACC 2821726 24 100.0 21 NNNNNNNNNN .....................T.. CGAGGTAACACGGGCGCTACC 2821771 24 100.0 21 NNNNNNNNNN ..T........G............ CGAGGTGCCACGGGCGCTACC 2821816 24 100.0 21 NNNNNNNNNN ..T........G............ CGAGGTAACACGGGCGCTACC 2821861 24 100.0 48 NNNNNNNNNN ..T........G............ CGGGGGGGCACGGGCGCTACTGGACCTCCTGGCCCTCGGGGTAACCCG 2821933 24 100.0 21 NNNNNNNNNN .....A..C..CG........... GCTGGATCTCGAGGTAACACG 2821978 24 100.0 57 NNNNNNNNNN ....G...C..CG........... GCTGGACCTCGGGGTGACACGGGCGCTACTGGACCTACGGGGCCTCGGGGTAACACG 2822059 24 100.0 66 NNNNNNNNNN ........C..TG.......G... ACTGGATCTCGAGGTGCCACGGGCGCTACCGGCGCCACTGGACCTACTGGACCTCGAGGTAACACG 2822149 24 100.0 57 NNNNNNNNNN ........C..TG.......G... ACTGGACCTCGAGGTAACACGGGCGCTACTGGACCTACTGGTCCTCCGGGTAACACC 2822230 24 100.0 66 NNNNNNNNNN ...............C....C... CGGGGTAACCCGGGCGCAACCGGCGCTACTGGACCTGCCGGACCTCGGGGTAACACGGCCGCTACC 2822320 24 100.0 66 NNNNNNNNNN ..T........G...T........ CGAGGTAACGCGGGCGCTCCCGGCGCTACTGGCCCTACTGGGCCTCGTGGTAACACGGGCGCTACA 2822410 24 100.0 66 NNNNNNNNNN .................A...... CGAGGAACCACGGGCGCTACCGGCGCCACTGGCCCTACTGGACCTGGAGGTAACACGGGCGCTGCC 2822500 24 100.0 66 NNNNNNNNNN ..T........G...T........ CGGGGAACCAGGGGCGCTACCGGCGCTACTGGAACTACTGGACCTCGAGGTGACACGGGCGCGACC 2822590 24 100.0 57 NNNNNNNNNN ...............G.C...... CGGGGTAACACGGGCGCTGCCGGCGCTACTGGACCTACTGCACCTCGGGGTAACACC 2822671 24 100.0 48 NNNNNNNNNN ......G........G........ CGGGGTGACACGGGCGCTACTGGACCTACGGGGCCTCGGGGTAACACG 2822743 24 100.0 57 NNNNNNNNNN ...........T............ CGAGGCAACACGGGCGCTACTGGTCCTACTGGACCTCGAGGGAACACGGGCGCTGCC 2822824 24 100.0 66 NNNNNNNNNN ..T........G...T........ CGGGGTAACACGGGCGCTACAGGCGCTACTGGACCTACAGGACCTCGAGGAACCACGGGCGCTACC 2822914 24 100.0 66 NNNNNNNNNN ..T........C...C....C... CGGGGAAACACGGGCGCTACCGGCCCTACTGGACCTACGGGACCTCGAGGTAACACGCGCGCTACC 2823004 24 100.0 57 NNNNNNNNNN ..T........C...C....C... CGGGGTAACCCGGGGGCCACTGGCGCTACTGGACCTCAAGGTGCTCAAGGTAACACT 2823085 24 100.0 75 NNNNNNNNNN ..T........TG.C......... CAAGGGGTTCAAGGTAACACGGGGGCTACCGGCGCTACTGGGCCTTCTGGACCTCGGGGTAACGCGGGCGCTGCC 2823184 24 100.0 75 NNNNNNNNNN ..T........G...T........ CGAGGTAACTCGGGCGCTACCGGCGCTACTGGGCCTACTGGACCTACTGGGTCTCGGGGTAACACGGGCGCTGCC 2823283 24 100.0 57 NNNNNNNNNN ...........G............ CGGGGTACCTCGGGCGCTACCGGCGCTACTGGACCTACTGGACCTCAAGGTAACACG 2823364 24 100.0 66 NNNNNNNNNN ..G........CG........... CAAGGTGCTCAAGGTAACACTGGTGCTACCGGTGCCACTGGACCTACTGGACCTCGGGGTAACACG 2823454 24 100.0 75 NNNNNNNNNN ..T........TG.C......... CAAGGCGCTCAAGGTAACACGGGGGCTACTGGTGCCACTGGGGCTACCGGACCTCAAGGGGTTCAAGGTAACACG 2823553 24 100.0 66 NNNNNNNNNN ..G........TG.C......... CAAGGCGCTCAAGGTAACACAGGCGCTACAGGCGCTACTGGACCTGCTGGACCTCGGGGTAACACT 2823643 24 100.0 65 NNNNNNNNNN ..T.....A..CG........... CAAGGGGTTCAAGGTAACACGGGGGCTACTGGTGCTACCGGGCCACTGGACGTCAAGGTAACACG 2823732 24 100.0 1 NNNNNNNNNN ..G........TG.C......... NNNNNNNNNN ========== ====== ====== ====== ========== ======================== 55 24 37 GGCGCTACTGGACCTACTGGACCT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [29-44] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [65.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [586,192] Score: 0.18/0.18 # # Final direction: F [0.86,0.37 Confidence: MEDIUM] >NC_018692 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 3959260 23 100.0 19 NNNNNNNNNN ....................... GCGCTTCAGCTTCTGCTTT 3959302 23 100.0 31 NNNNNNNNNN ......A..C............. GGGCTTTCGCCTGTGCTTCAGCCTCTGCCTT 3959356 23 100.0 31 NNNNNNNNNN ......A..C............. GGGCTTTCGCCTGCGCTTCAGCCTCTGCCTT 3959410 23 100.0 31 NNNNNNNNNN ....................... CCGCCTTCGCCTGCGCTTCAGCTTCTGCCTT 3959464 23 100.0 31 NNNNNNNNNN A.....A................ TAGCCTTCGCCTGAGCTTCAGCCTCTGCCTT 3959518 23 100.0 31 NNNNNNNNNN A.....G..C............. GGGCTTTCGCCTGTGCTTCAGCCTCTGCCTT 3959572 23 100.0 37 NNNNNNNNNN ....................... GCGCCTTCGCCTTCGCCTGCGCTTCAGCTTCTGCCTT 3959632 23 100.0 31 NNNNNNNNNN .AA...A................ GGGCCTTCGCCTCTGCTTCAGCTTCTGCCTT 3959686 23 100.0 31 NNNNNNNNNN .AA...A................ GAGCTTTCGCCTGTGCTTCAGCCTCTGCCTT 3959740 23 100.0 31 NNNNNNNNNN A.....A................ TAGCCTTCGCCTGAGCTTCAGCCTCTGCCTT 3959794 23 100.0 19 NNNNNNNNNN ....................... GGGCTTCAGCTTCTGCATT 3959836 23 100.0 31 NNNNNNNNNN ......A..C............. TAGCCTTCGCCTGTGCTTCAGCCTCTGCCTT 3959890 23 100.0 1 NNNNNNNNNN .AA...A................ NNNNNNNNNN ========== ====== ====== ====== ========== ======================= 13 23 29 TGCGCGCGCTTCTTCTTCCGCTT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1033,126] Score: 0.18/0.18 # # Final direction: R [0.59,0.64 Confidence: LOW] >NC_018712 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1531267 32 100.0 34 NNNNNNNNNN GA.G............................ CCGTCACCTCAATAACTTCGTAATTATCGTCATC 1531333 32 100.0 34 NNNNNNNNNN ................................ TCAACTTCTTCATCTACTTCACCTCCTCTCCCCA 1531399 32 100.0 34 NNNNNNNNNN ..........................GAGAC. TTAAATTAGGTTTTGGCGGGACAAAGGAGGAAAT 1531465 32 100.0 34 NNNNNNNNNN ................................ TGGTTCGTTTGGTCGCAATACGGGTACACCTTCA 1531531 32 100.0 33 NNNNNNNNNN ................................ CAAAACAAGCCACTGCCAAATTTGTAAATTGCT 1531596 32 100.0 36 NNNNNNNNNN ................................ GTTAAAAAAGAGGTTAAAAAACCGGATTACAGCAAG 1531664 32 100.0 36 NNNNNNNNNN ................................ CCGCTGAAATTTGTTTATCAGGCACGTATGACTGAC 1531732 32 100.0 35 NNNNNNNNNN ................................ TGTAACATGATAGAGTTGATTAGGTAAGTTGTCGG 1531799 32 100.0 33 NNNNNNNNNN ................................ CATGTACGAGATGCAGATGGTATCGTAGATGTT 1531864 32 100.0 34 NNNNNNNNNN ................................ GGTCGAGAAAGTAGAATTTGCTAGGTTGCAATTT 1531930 32 100.0 38 NNNNNNNNNN ................................ TTTCGTATTTTAGTTACCGTGACGCGCAACAATATTAC 1532000 32 100.0 36 NNNNNNNNNN ................................ GAGGAATTGCTCCTTGACTTTAGCAAGCCACAAGAT 1532068 32 100.0 34 NNNNNNNNNN ................................ TCTTGACTGTGATGGAGACTATGAGAGAGCCAGA 1532134 32 100.0 1 NNNNNNNNNN ................................ NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 14 32 34 ATTTCAATCCACTCACCCGCGAAGGGTGAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [9,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.50,-4.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [106,150] Score: 0/0.18 # # Final direction: R [1.01,4.91 Confidence: MEDIUM] >NC_018712 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1531333 32 100.0 34 TATCGTCATC ................................ TCAACTTCTTCATCTACTTCACCTCCTCTCCCCA 1531399 32 81.2 40 CCTCTCCCCA ..........................------ GAGACCTTAAATTAGGTTTTGGCGGGACAAAGGAGGAAAT 1531471 32 100.0 34 AGGAGGAAAT ................................ TGGTTCGTTTGGTCGCAATACGGGTACACCTTCA 1531537 32 100.0 33 TACACCTTCA ................................ CAAAACAAGCCACTGCCAAATTTGTAAATTGCT 1531602 32 100.0 36 GTAAATTGCT ................................ GTTAAAAAAGAGGTTAAAAAACCGGATTACAGCAAG 1531670 32 100.0 36 TTACAGCAAG ................................ CCGCTGAAATTTGTTTATCAGGCACGTATGACTGAC 1531738 32 100.0 35 TATGACTGAC ................................ TGTAACATGATAGAGTTGATTAGGTAAGTTGTCGG 1531805 32 100.0 33 AAGTTGTCGG ................................ CATGTACGAGATGCAGATGGTATCGTAGATGTT 1531870 32 100.0 34 CGTAGATGTT ................................ GGTCGAGAAAGTAGAATTTGCTAGGTTGCAATTT 1531936 32 100.0 38 GTTGCAATTT ................................ TTTCGTATTTTAGTTACCGTGACGCGCAACAATATTAC 1532006 32 100.0 36 ACAATATTAC ................................ GAGGAATTGCTCCTTGACTTTAGCAAGCCACAAGAT 1532074 32 100.0 34 GCCACAAGAT ................................ TCTTGACTGTGATGGAGACTATGAGAGAGCCAGA 1532140 32 100.0 GAGAGCCAGA ................................ AGCGCCAAAT ========== ====== ====== ====== ========== ================================ 13 32 35 ATTTCAATCCACTCACCCGCGAAGGGTGAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [9,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.50,-4.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [172,144] Score: 0/0.18 # # Final direction: R [0.74,5.18 Confidence: HIGH] >NC_018719 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 281180 37 97.3 37 AGCAACCATA -.................................... ATTTTGAAGGCACGAGAAACAAACTATTCTGAATATC 281254 37 100.0 38 TCTGAATATC ..................................... TACAGATTTCTTGCAATTCTAACGCTCAAAGATGAATG 281329 37 100.0 36 AAGATGAATG ..................................... TGACTGGCATTGTAATACCGCCAGATTGGCTAGGTA 281402 37 100.0 39 TGGCTAGGTA ..................................... CAGATGAAAATATGAGTTTACATTTACTGCATGTATACT 281478 37 100.0 37 CATGTATACT ..................................... TCTCTGTCTGGTTCATGCCGTTGTTCCGCGTAGGTGC 281552 37 100.0 40 GCGTAGGTGC ..................................... CAAAGCGTCAGCAACCAGGTAAATGAGCGCATGCAACAAA 281629 37 100.0 41 ATGCAACAAA ..................................... TACAACCTCTGGCTATCGGGCTACAATCCCCGGGAGATAAG 281707 37 100.0 39 GGGAGATAAG ..................................... TAGACGTTCATGCACTTTGTTAAGATGTTTGAAGTTCCT 281783 37 100.0 36 TGAAGTTCCT ..................................... TTATGTGTTAGAGGTCATTACCCGCGACTGGTACTT 281856 37 100.0 40 ACTGGTACTT ..................................... TCAATATGGAATTTTCGCCAGAGAAAAACGGCGTGGTGCA 281933 37 100.0 41 GCGTGGTGCA ..................................... AATACTACAAAAAGATGCGCAAGATGTATGGCAACATTTAC 282011 37 100.0 40 CAACATTTAC ..................................... GGGCATTTATGCAGTTAGCTTTTACGAGATAGGCAAACCT 282088 37 100.0 40 AGGCAAACCT ..................................... GTATTGGAGAAAGGCGCAACTACATGAGTGAGATATTCTG 282165 37 100.0 36 AGATATTCTG ..................................... TTACAAAACAGTGTTTACCACTATGTGGGCATAGCA 282238 37 100.0 42 GGGCATAGCA ..................................... GAGCGATGCCAAGAACCCTAGGCCCATGAATCCAGTATGGGC 282317 37 100.0 39 CAGTATGGGC ..................................... TTGTTTCCATGTCCATAAGCTTGATGACTTGCATGTAAG 282393 37 100.0 41 TGCATGTAAG ..................................... AGATACGACAGTGAAAAAAGAGCAGCAGCGTCGTATTATTT 282471 37 100.0 37 CGTATTATTT ..................................... GTACCATACGTGACTCCATCGAAAACGACGCCAACAT 282545 37 100.0 38 ACGCCAACAT ..................................... GTTGACAGACAGGAGCGCCTTTAGGAACGTGTCAGGCG 282620 37 100.0 40 GTGTCAGGCG ..................................... TGCTTGTGTGGGTATCAGTCGGCGACAAATTCAAGCCCTT 282697 37 100.0 38 TCAAGCCCTT ..................................... CTGAATGTCTTGTTTGCTTCCTGCTCTACGATTTTCCC 282772 37 100.0 35 CGATTTTCCC ..................................... CTTGTTCAATACTGCTAGATGGGCCTCCCAGTCAA 282844 37 100.0 41 TCCCAGTCAA ..................................... TCGTTAACGTCGGAGTAAACGACTTTCATGTTATTGTAATC 282922 37 100.0 41 TATTGTAATC ..................................... AAGAAGGCAAGAGAAACAGTTGATGTCACCGACTATACGGT 283000 37 100.0 39 ACTATACGGT ..................................... AAGACTCCTGAAACGGTGGGATTCGCTCAACCACATAGG 283076 37 100.0 41 ACCACATAGG ..................................... CTGGTAGCCAGGCTATCCCTGCCAGGCCACGCTTGGCACCA 283154 37 100.0 40 CTTGGCACCA ..................................... AACAAGTACAAACGGAATAGACATAGATAATAGATATAGG 283231 37 100.0 33 TAGATATAGG ..................................... GCAGAACGGCAGAGTGCTGAGTGCTGACCTATC 283301 37 100.0 37 CTGACCTATC ..................................... TGTATTAAACTCCGCTTTCTGACCAAAAGAAACAAAG 283375 37 100.0 40 AGAAACAAAG ..................................... AACGACCATGAGGTCATGGCGTTCCTGTTTGCGTATCAGC 283452 37 100.0 39 GCGTATCAGC ..................................... AGGAGCCAGTATTTGAATGTCAACAAGTACAAACGGAAT 283528 37 100.0 40 CAAACGGAAT ..................................... CAGGGCCCGCTCTCACCAAGGAACAAGTCGTCTACAATCT 283605 37 100.0 38 TCTACAATCT ..................................... GAATCCATGTTCCTGCGTATGTCGCAAGCGTCCCCTGA 283680 37 100.0 37 CGTCCCCTGA ..................................... GCCATGGCCGAAGCCACTTGGGCTGGCATGTATGTCC 283754 37 100.0 40 ATGTATGTCC ..................................... GCTTTGGTGTCTGGTACAGATCGCAAGGCGGGCAACTGGA 283831 37 100.0 39 GGCAACTGGA ..................................... AGATGAAGCGACTGATCAAGCTCCTAAAAGAAGAATAAA 283907 37 100.0 GAAGAATAAA ..................................... AGGGCACTTT ========== ====== ====== ====== ========== ===================================== 37 37 38 CTTTCAATCTCCACTATTTGGAGATTCGCGTTTTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.16%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [64,276] Score: 0.18/0.18 # # Final direction: R [0,5.09 Confidence: HIGH] >NC_018719 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================== ====== 668020 18 100.0 36 CGTTGATAAC .................. GCTTATTAGGTCGTTGCCCGATCCGCCTTCAATCAT 668074 18 94.4 36 CTTCAATCAT G................. CCATAACTTGTCATTACCGTCGCCTCCAATGATGCA 668128 18 100.0 CAATGATGCA .................. TACAATAATAT ========== ====== ====== ====== ========== ================== 3 18 36 ATCGTCTCCGTTGCCGCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [409,2150] Score: 0.18/0.18 # # Final direction: R [0.41,0.55 Confidence: LOW] >NC_018720 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1805098 28 100.0 33 NNNNNNNNNN ..G...........A......A...... TTGGCTCCTTCTTGAACCCTATCCCTGATCCAG 1805159 28 100.0 33 NNNNNNNNNN .A......A........A.......... AACCTAAAGGCAAAGACGACAAACCGGAAACCA 1805220 28 100.0 33 NNNNNNNNNN .............A.............. CTCACTGACATGGCTGTAGCTAGCTCTGCACGG 1805281 28 100.0 33 NNNNNNNNNN .............A........A..... AGATGCCATGTATCGGTATGCATCCAACGAGCA 1805342 28 100.0 34 NNNNNNNNNN ............................ GTCACCGTCCACCGTCAGGGCCTCCTTGGGGTCG 1805404 28 100.0 33 NNNNNNNNNN .............A.............. TCTTCCACAGCTGCACCCGCTTCTTCTCGACCG 1805465 28 100.0 33 NNNNNNNNNN ............................ ATCAGTGCCGGGACCCGGGTCACCCTGGCCTCC 1805526 28 100.0 33 NNNNNNNNNN ..............C............. GCCTTGTCCCAGATGCCTTTGAGCTCGCTGGAC 1805587 28 100.0 33 NNNNNNNNNN ............................ AGGTCTTCGAGCCGTACGCTGCCGATGACCGAA 1805648 28 100.0 33 NNNNNNNNNN ............................ TGCCGCCGGCCGAGCCTGCCGCTGACTGCCGGA 1805709 28 100.0 33 NNNNNNNNNN ........G................... TTTTCAGACGTTGTGCCTCATGCAACGTGAGGA 1805770 28 100.0 33 NNNNNNNNNN ............................ CCGGACATGACCCCCAGGCTGCGGATCGTCAAG 1805831 28 100.0 33 NNNNNNNNNN ............................ TCCGGCATCGTCCAGAATGTCGCCTCCAAAGCA 1805892 28 100.0 33 NNNNNNNNNN ............................ TGTCCATTGCCTGTATACCATTCGACGTGTGAA 1805953 28 100.0 33 NNNNNNNNNN ............................ GTCGGGCATGGCGCATCTGAGCGCCAGGATCGA 1806014 28 100.0 33 NNNNNNNNNN ............................ GCAGTTTGCCAAGTCCGCCCTGTACGGGCAGGA 1806075 28 100.0 33 NNNNNNNNNN ...................A........ GTCTACGACATCAAGCCCATGATCTACATGCAG 1806136 28 100.0 33 NNNNNNNNNN ............................ CAGGTGAGCATCGTCATCGGCTGCTTTTTGTAG 1806197 28 100.0 33 NNNNNNNNNN ............................ CAGCCGTAGAGTCAAAAAACATGCTGAATACCA 1806258 28 100.0 33 NNNNNNNNNN ............................ GGCGCGCAGGGAACAGCAGCGGGTGATGAATTA 1806319 28 100.0 33 NNNNNNNNNN ............................ ACGACTTGCAGAGTCAGGATGGTCTCATTGTGA 1806380 28 100.0 33 NNNNNNNNNN .............A.............. CGCCTATGGAAGGACCTGACATCGTATATCGAG 1806441 28 100.0 33 NNNNNNNNNN ............................ ATCAGTGGATTACGTCAATGCGAACGTGACACG 1806502 28 100.0 33 NNNNNNNNNN ............................ TGCATCATGCCAAGCGTGATCGGGTCGGAGAAG 1806563 28 100.0 33 NNNNNNNNNN ............................ TTGAGGCATGGCAGAAAGGTCTACAACCGTGGA 1806624 28 100.0 33 NNNNNNNNNN ............................ TTGGACATATCGTTGAGATAATCCACCAGTTTG 1806685 28 100.0 33 NNNNNNNNNN ............................ GTTATCTGCGCGTTGTCCGCTCCGTTGTATGCA 1806746 28 100.0 33 NNNNNNNNNN ............................ CCATCTGGAGAAACTGTTGAAGCTAGGGGAGAA 1806807 28 100.0 33 NNNNNNNNNN ............................ CATCCTTTTTTATGACCAAAAGACCAAGCAGTA 1806868 28 100.0 33 NNNNNNNNNN ............................ TTTCCTATAACGTACATGCCATACAGACTCGCG 1806929 28 100.0 33 NNNNNNNNNN ............................ TATATCACAGGAAACAATGCGATCATGGACGTG 1806990 28 100.0 33 NNNNNNNNNN ............................ TTGCTGGGCTTATGGGTGGCTGATATGATAGAA 1807051 28 100.0 33 NNNNNNNNNN ............................ ATGTGACCTTCGCCCATGGTGGCAGGCCTGGCA 1807112 28 100.0 33 NNNNNNNNNN ............................ ACAGTGGAACACGGAAAGCAATGTCGGTGCGAA 1807173 28 100.0 33 NNNNNNNNNN ............................ GAAAGGCTTTAAAGGCTGTTAGTGGTCTTGATA 1807234 28 100.0 33 NNNNNNNNNN ............................ TTACCTTGTTGTAGGCTTGACGATGTGATCGCG 1807295 28 100.0 33 NNNNNNNNNN ............................ TAAGTGCTATCTGGTCAAAAGTATAGCCAGCCT 1807356 28 100.0 33 NNNNNNNNNN ............................ TTCCGAAACCGTTCAGACTGTCTATAAAATAAA 1807417 28 100.0 33 NNNNNNNNNN ............................ GGTCACTTGCGCAGGCCACACCGAACAAGTGGT 1807478 28 100.0 33 NNNNNNNNNN ............................ ATTATCGGCAGCGTAGTACGTTTTGTCGGGTCA 1807539 28 100.0 33 NNNNNNNNNN ............................ TTACTCGGTGGCACCATGGCCTTTCGCCGCCGC 1807600 28 100.0 33 NNNNNNNNNN ............................ AGGTCTGGCAAGGACTTTGTCACGCTGCTCCCG 1807661 28 100.0 33 NNNNNNNNNN ............................ GGCACCCACGGCCGCCTCCTTGGACACCATTCG 1807722 28 100.0 33 NNNNNNNNNN ............................ GCGCTGGTGCTCTGCGCAGTCTGCCCGAAGACC 1807783 28 100.0 33 NNNNNNNNNN ............................ AAAGATACCAACTCAATTGAGTTGAAAGGAGCA 1807844 28 100.0 33 NNNNNNNNNN ............................ CTTTCTCAATGGCATGGCCATCAAGGGATCCAA 1807905 28 100.0 33 NNNNNNNNNN ............................ CTGATGGCGGCCATCTCCCGCTGGTAGTCTTTG 1807966 28 100.0 33 NNNNNNNNNN ............................ GTGGTTTTGAACACCGATACCTTCTGGCCGGCC 1808027 28 100.0 33 NNNNNNNNNN ............................ ATAATCCTTTTAATGTTGCTTGCGGTCTTACCG 1808088 28 100.0 33 NNNNNNNNNN ............................ CGCCCCGACCCTGGCCGCACAGGTTGAAAATAA 1808149 28 100.0 33 NNNNNNNNNN ............................ GGGGCACCGGCGATGATGGCGAGATAGTCCATG 1808210 28 100.0 33 NNNNNNNNNN .A.......................... TCGTACACATACGCCATATCCCAGGCGAAGTAA 1808271 28 100.0 33 NNNNNNNNNN ............................ ATCTTGGTGATCGAAAAGCTGGCTCCGGACGCC 1808332 28 100.0 33 NNNNNNNNNN ............................ CTGATATCCATACCATCAGCCACAGCCTTGACA 1808393 28 100.0 33 NNNNNNNNNN ............................ CAGCAGACTACCAGCAAGACACGAACTGCATAG 1808454 28 100.0 33 NNNNNNNNNN ............................ CCCAGCTGACGCTGACGATGCAGTCGGGGTGCG 1808515 28 100.0 33 NNNNNNNNNN ............................ GAGGGTATGAGTGACGACGACCGGATAAACGAC 1808576 28 100.0 33 NNNNNNNNNN ............................ GTACTGTCAAAAGCTGATCGTCCAGGGCAAAGG 1808637 28 100.0 33 NNNNNNNNNN ...........A................ ACGAGGGGTCCAACGATGCGTTCGGATACTGCG 1808698 28 100.0 33 NNNNNNNNNN A..........A................ ACACTGACGACGGGCAGGCGTTGCGCAACGAGA 1808759 28 100.0 33 NNNNNNNNNN ............................ AACCTCGGCAGGCGCATCCTCTTCGTCTTTGGC 1808820 28 100.0 33 NNNNNNNNNN ............................ GATGTTGGCGACGGTCCTCAGAGCGGAATACGA 1808881 28 100.0 33 NNNNNNNNNN ............................ AGCTTGAGCGAGTCCCTGAATTCCACTACCTTG 1808942 28 100.0 33 NNNNNNNNNN ............................ ACTGAATTGATGCGTTGCTTGGATGCGCATGGA 1809003 28 100.0 33 NNNNNNNNNN ............................ AAACCAGTGCACCAGCTCTTCTGCGGTGACATT 1809064 28 100.0 33 NNNNNNNNNN ............................ ACAACGGTATCAAGGAATTCGTGGCGATACCGA 1809125 28 100.0 33 NNNNNNNNNN ............................ CTGCGGAAAAGGCAGTCGGCTGGCCGTGAGGGT 1809186 28 100.0 33 NNNNNNNNNN ............................ CACGGTCACGCACCTGACATGAACGCCCTCCAA 1809247 28 100.0 33 NNNNNNNNNN ............................ GTTGTTTGCTGTCCAGGGAAAGGACATGACCGG 1809308 28 100.0 33 NNNNNNNNNN ............................ GGGGTGACCACGAGCGCCCCGATGGTGGCGAAG 1809369 28 100.0 33 NNNNNNNNNN ............................ TCCACCTTGGACGTGTGCAACTGCTGGCCGTAA 1809430 28 100.0 33 NNNNNNNNNN ............................ CAACAAATCTGTCAAATCAACAAAATTTGCAGT 1809491 28 100.0 33 NNNNNNNNNN ............................ CAAGGAAGCGGCCGAAAAGTCCATCCGTCGTCA 1809552 28 100.0 33 NNNNNNNNNN ............................ TGCGGATCGGGCTGATCGCTGGTATCATCCTGG 1809613 28 100.0 33 NNNNNNNNNN ............................ CAGGAGCTGAGCAACGTCATCGGCGGCCCGGAA 1809674 28 100.0 33 NNNNNNNNNN ............................ ACCCCGAGCTAGTAGTCGATGAGGCAGCGCAGA 1809735 28 100.0 33 NNNNNNNNNN ............................ CTCTCGGCGCATTCGGCAATCGTTTGACATTAG 1809796 28 100.0 33 NNNNNNNNNN ............................ TTTGATGGTATAGATCAGCTGCGGATACCGTTG 1809857 28 100.0 33 NNNNNNNNNN ............................ ATCTCACCGGCAGCCATGCGGAACATAGGCGAA 1809918 28 100.0 33 NNNNNNNNNN ............................ TCGGCAAGCGACTGCGGCCCTTTTTGCTGGTTG 1809979 28 100.0 33 NNNNNNNNNN ............................ AAGGGGAACGTGCGGCAGTCTCTTGAAAATATG 1810040 28 100.0 33 NNNNNNNNNN ............................ AGAACCGGCGCGTTTTCCCGTATCCAAACGTCG 1810101 28 100.0 33 NNNNNNNNNN ............................ CTTTGCCTCCGATGCGTTCGGACAGTTCCAGGC 1810162 28 100.0 33 NNNNNNNNNN ............................ GATACGGATGGCCGATAGGATGGGCATACACGG 1810223 28 100.0 33 NNNNNNNNNN ............................ TCCTCGGCCATCGCACACCTACCTCTCCGTGCA 1810284 28 100.0 33 NNNNNNNNNN ............................ TACTTGTTGTTGGTGTTTCCGGTGATGGGGCTG 1810345 28 100.0 33 NNNNNNNNNN ............................ ATATCCTGACCGCTGATATCGATGATCCTTTGG 1810406 28 100.0 33 NNNNNNNNNN ............................ TTCGTTCCATATGGTCGCCTTGTCATGAAGCAG 1810467 28 100.0 33 NNNNNNNNNN ............................ GTTCTGGTTGAGCGCCACGATGCACCTCCGCGG 1810528 28 100.0 33 NNNNNNNNNN ............................ GTGGCGGTCTGCCGGTCCAGCACGGCCTTGTTG 1810589 28 100.0 33 NNNNNNNNNN ............................ TCTCCGTGATTATGATATAGATGCATGTCAGTG 1810650 28 100.0 33 NNNNNNNNNN ............................ GGGGTGACCACGAGCGCCCCGATGGTGCCGAAG 1810711 28 100.0 33 NNNNNNNNNN ............................ TTCAACAAAACATCTTCCAAGTTTCACATCGAA 1810772 28 100.0 33 NNNNNNNNNN ............................ TCATTCGACGACGGCTTGTAGCATAGCGATGAC 1810833 28 100.0 33 NNNNNNNNNN ............................ GCGAATTCATGATCCTCCTGGATTCTTGGCGTA 1810894 28 100.0 33 NNNNNNNNNN ............................ TCAAAAATTCAGCCCCTACCCTTGCTTCACAGG 1810955 28 100.0 33 NNNNNNNNNN ............................ AAGGGGAACGTGCGGCAGTCCCTTGAAAATATG 1811016 28 100.0 33 NNNNNNNNNN ............................ GGATTATCAGAGAGCTTCCGTTCTGCAAGGTCA 1811077 28 100.0 33 NNNNNNNNNN ............................ ACCCCGAGCTTGTAGTCGATGAGGCAGCGCAGA 1811138 28 100.0 33 NNNNNNNNNN ............................ AATATGCTGAACTTTCCGGCCTTGCGCAATGAG 1811199 28 100.0 33 NNNNNNNNNN ............................ AATTCAGCAAGAGGATTATGCCAGGAAAGCTGA 1811260 28 100.0 33 NNNNNNNNNN ............................ GCTCCCCGCCTTCCTATGGGAATGGCGGGGTTA 1811321 28 100.0 33 NNNNNNNNNN ............................ AAACCCAAGCTCAAGGACGGCACCAAGCTCACG 1811382 28 100.0 33 NNNNNNNNNN ............................ AGTGGGTTTCATGACATATGGAGAGAGAGCTTG 1811443 28 100.0 33 NNNNNNNNNN ............................ CAGTGTCTACTCAGGATGAGCCTGATGAAAATG 1811504 28 100.0 33 NNNNNNNNNN ............................ AATCTGAGATTCCTGAGCAACGAGGTCACATTG 1811565 28 100.0 33 NNNNNNNNNN ............................ GGTTCCGTAGATTTCGTCACCCAAATATTCCTG 1811626 28 100.0 33 NNNNNNNNNN ............................ TTAGTGCATACCCGTTCACCCGGATAGATACGG 1811687 28 100.0 33 NNNNNNNNNN ............................ CTTACGCAAACGAATCGACTATACAATACCAGG 1811748 28 100.0 33 NNNNNNNNNN ............................ TAGAATGTTAACAGTGTCAACATAGAGAGGGAA 1811809 28 100.0 33 NNNNNNNNNN ............................ TGGTGAGAGCCTTTGGTCTATCTATGGGACCGG 1811870 28 100.0 33 NNNNNNNNNN ............................ TCGGAGCTGGCCGACCGTGTGATTCGTGGCGAA 1811931 28 100.0 33 NNNNNNNNNN ............................ AAATTGCGCAACCATGACAGGCTAAAGGACACT 1811992 28 100.0 33 NNNNNNNNNN ............................ CCAAAAAACTCAATGAGCACGCCAGTTTCAGCA 1812053 28 100.0 33 NNNNNNNNNN ............................ GCCGTCAGCCAGGCCAATCCGTATTTTTCAAAA 1812114 28 100.0 33 NNNNNNNNNN ............................ GTTTTCATATTCTGCGCGCTGGTGGCGATGCCG 1812175 28 100.0 33 NNNNNNNNNN ............................ TGTTGGGCTTATGGGTGGCTGATATGATTGAAT 1812236 28 100.0 33 NNNNNNNNNN ............................ ATAACTTTTTTGAAATAATATGTCCAACTTTTA 1812297 28 100.0 33 NNNNNNNNNN ............................ GTTTGACGTGTATCCATGCGGTTTTGTCGGAAG 1812358 28 100.0 33 NNNNNNNNNN ............................ TCATCTACGCCAACACCGATGGATTCATGATGG 1812419 28 100.0 33 NNNNNNNNNN ............................ TGATCACTATCTTTCCGATGCCTACAAAATCCA 1812480 28 100.0 33 NNNNNNNNNN ............................ ATTCTGATCCGAACCGGGTTCCATGAAGGCGAA 1812541 28 100.0 33 NNNNNNNNNN ............................ CCTGTGCATAAGCATTGTTGATTCCCATCTGGG 1812602 28 100.0 33 NNNNNNNNNN ............................ TGCCCGAAAGCCGACAGGGATGACAGGGACAAG 1812663 28 100.0 33 NNNNNNNNNN ............................ CAAGGGTCGATGTGCGTGTGAGCGCTTCCGATG 1812724 28 100.0 33 NNNNNNNNNN ............................ TTGGCGGCATCGGTGCCGGCGACTGGGGGAGGC 1812785 28 100.0 33 NNNNNNNNNN ............................ GGCTCGCAGCCAGTTGCCCAGGGTGGGCACGTA 1812846 28 100.0 33 NNNNNNNNNN ............................ TTATATGTGGCTCTCGCCCGAACGTCAACATAA 1812907 28 100.0 33 NNNNNNNNNN ............................ ACGTTCAACGTCTTGTGCGGGGTAAATCGGGTA 1812968 28 100.0 33 NNNNNNNNNN ............................ TCTTTTTTCCAATCCGTTGTCCTCGGGCTCCGG 1813029 28 100.0 33 NNNNNNNNNN ............................ GACAGACATAGATCAGGAATTGTTACAAGAAAA 1813090 28 100.0 33 NNNNNNNNNN ............................ AATCATCATGCCATTGGCAGCGTACTGTGACCC 1813151 28 100.0 33 NNNNNNNNNN ............................ CTACATGAACCAGACCACTGAAAATACTTACGA 1813212 28 100.0 33 NNNNNNNNNN ............................ AAATCGGTTATGAAGTGTGCAGAGACCTTATTA 1813273 28 100.0 33 NNNNNNNNNN ............................ TGGTCACGGGACTCTGAGCGTTACCACCAGAGG 1813334 28 100.0 33 NNNNNNNNNN ............................ GTTGTATCTGCCGCTGTTGATTAGGGCGCCCGT 1813395 28 100.0 33 NNNNNNNNNN ............................ ACATACAACAATGCACAGATGGCCGAAAGGTCA 1813456 28 100.0 33 NNNNNNNNNN ............................ GACTGCTACAGCTCTGACGGCGTTTCTCCGGCA 1813517 28 100.0 33 NNNNNNNNNN ............................ ATCATCGGCAATGAGCTATTCCCGCCTGAACTC 1813578 28 100.0 33 NNNNNNNNNN ............................ TGACACTGCTGGCGTGAGTTCCAGGCTGGCATA 1813639 28 100.0 33 NNNNNNNNNN ............................ CAGTACAACGATAAGGAACTGTTGTTAGCTGAA 1813700 28 100.0 33 NNNNNNNNNN ............................ TCATATTGTGCATGGTGGCTGTGGCGATTGTTG 1813761 28 100.0 33 NNNNNNNNNN ............................ CTCAAACGGACCCTGCATGCCAACAAACTTCGG 1813822 28 100.0 33 NNNNNNNNNN ............................ CCGCCACCAGCATACAGCTCTTGCATGAACTCA 1813883 28 100.0 33 NNNNNNNNNN ............................ CTAGTGAATTCACCAACCTTATACAAGTGCTGA 1813944 28 100.0 33 NNNNNNNNNN ............................ GATATCCTTTATAGCCGGGTCGGTTTTTGCGAG 1814005 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 147 28 33 GGATCATCCCCGCGGATGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [15,209] Score: 0.18/0.18 # # Final direction: R [0.37,0.86 Confidence: MEDIUM] >NC_018721 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2608898 36 100.0 30 CAACAGGTAG .................................... GAAATCCTGAAAATCAACTATCCTATGAAG 2608964 36 100.0 30 TCCTATGAAG .................................... CATTTGTTCGTTAATTGGCGTAGCACTATC 2609030 36 100.0 30 TAGCACTATC .................................... CTCTTAATACTCTAAGTGTTAGTTTTGTTT 2609096 36 100.0 30 AGTTTTGTTT .................................... TTTGTAGTACATATTAAGAAATGTTAAAAT 2609162 36 100.0 30 ATGTTAAAAT .................................... GGTTTTAGTTGCAATCAAAATTGTTTTCGT 2609228 36 97.2 29 TTGTTTTCGT A................................... GCATTCTTTTGTTCGCTCCCAGCTTGCAA 2609293 36 97.2 CAGCTTGCAA ...........G........................ TTTTTTGACG ========== ====== ====== ====== ========== ==================================== 7 36 29 GTTGTAACTGCCCTTATTTTGAAGGGTAAACACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [540,576] Score: 0/0.18 # # Final direction: F [0.78,0 Confidence: HIGH] >NC_018721 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2613484 36 100.0 30 CAACAGGTAG .................................... CATTCCATACAAGTTTCAACATCATCAATA 2613550 36 100.0 30 ATCATCAATA .................................... CAGAATCTAATTGCTGATAAGTGTAACTTG 2613616 36 100.0 30 GTGTAACTTG .................................... ACGATGTATTGCCACTATTCAGGCGAATTG 2613682 36 100.0 30 AGGCGAATTG .................................... GTAAGAATGGAAGCTTTAAAACATAAGATT 2613748 36 100.0 30 ACATAAGATT .................................... CTGAGTACCTACTAAACCTTCTGAAAGAGT 2613814 36 100.0 30 CTGAAAGAGT .................................... CATAATATTTATTGTATAAAAAAACCGCTT 2613880 36 97.2 30 AAAACCGCTT ........G........................... GCTTGTGAAGGTGTTGGCAAAGCGTTGAAA 2613946 36 94.4 30 AGCGTTGAAA ..............................T...A. ACCAGATTGTATATTTTGTTGTCCTACCGA 2614012 36 94.4 30 GTCCTACCGA .......................A..........A. TTGCGATCCGTGTTGATTAATTGAATCTGG 2614078 36 97.2 30 TTGAATCTGG ..................................A. TAGTTTGCTTCTATCTTTTATTACAGTCGA 2614144 36 97.2 TTACAGTCGA ..................................A. TTTTTTGAC ========== ====== ====== ====== ========== ==================================== 11 36 30 GTTGTAACTGCCCTTATTTTGAAGGGTAAACACAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [145,314] Score: 0.18/0.18 # # Final direction: F [0.78,0.18 Confidence: MEDIUM] >NC_018721 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================================== ====== 320687 46 100.0 30 CCGCCTTTTT .............................................. ATATACCAATTCCTATCGTGCAACCCTCTG 320763 46 100.0 30 CAACCCTCTG .............................................. CCCTGTGTCGTTGTAAACAATAGGGTATAA 320839 46 100.0 30 TAGGGTATAA .............................................. AACATTACATGAACCCATATAAACCAGCTT 320915 46 100.0 30 AAACCAGCTT .............................................. CCATCAAGACTATTAATAGTTACGCTAGTA 320991 46 100.0 30 TACGCTAGTA .............................................. ATGTGAAACAATGGAAGAGTTAAGCGGATT 321067 46 100.0 30 TAAGCGGATT .............................................. ACACTATTTATAAGGATAAGTACCCAGAAG 321143 46 100.0 29 TACCCAGAAG .............................................. CAAACACTTTGCAGACTTCTATCCATTCG 321218 46 100.0 30 TATCCATTCG .............................................. ATTTTTAAAAGCAAGAATGTCTCCTGTTAA 321294 46 100.0 30 CTCCTGTTAA .............................................. ATATTGCTATTTATCCTTTTTAGATTTTCT 321370 46 100.0 30 TAGATTTTCT .............................................. ACAATCTATACAACAAACTAAACAGGGGTA 321446 46 100.0 30 AACAGGGGTA .............................................. CTACCAGTAAGTTTAGCTTTAAATGTTCTT 321522 46 100.0 30 AAATGTTCTT .............................................. AAACCTTCTTGTGTTAAAAAGTTATGTGCT 321598 46 100.0 29 GTTATGTGCT .............................................. ACACCGTCATAGTAAAAGTGATCTTCATT 321673 46 100.0 29 GATCTTCATT .............................................. CGCTCTTTTTGTTACTATGTCGAGATATT 321748 46 100.0 30 TCGAGATATT .............................................. AAATAGCTTGTGTGGATATAAGTGTTCTTT 321824 46 100.0 AGTGTTCTTT .............................................. ATAAGATGAA ========== ====== ====== ====== ========== ============================================== 16 46 29 CCTGTGAATTATCACTAAAAATACAATTTTGAAAGCAATTCACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:71.74%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [401,754] Score: 0/0.18 # # Final direction: R [0,0.64 Confidence: HIGH] >NC_018721 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================================== ====== 322051 47 100.0 28 GCGGTTTAAG ............................................... TATTCTATTACTACTATAGTATATTATT 322126 47 100.0 29 GTATATTATT ............................................... AGGCTAAAACTTTAGTTGATCCCGATCTC 322202 47 97.9 TCCCGATCTC ..............................................A ACGGTATATTAGTTTCCGTGCCGTTGTCG ========== ====== ====== ====== ========== =============================================== 3 47 28 CCTGTGAATTATCACTAAAAATACAATTTTGAAAGCAATTCACAACC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.21%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.10,-1.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1765,375] Score: 0.18/0.18 # # Final direction: F [0.59,0.37 Confidence: LOW] >NC_018721 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================================== ====== 3964447 40 95.0 10 TTGCAGTGGT ..........C..A.......................... TTGTGGTGGC 3964497 40 100.0 10 TTGTGGTGGC ........................................ TTGTGGTGGC 3964547 40 100.0 TTGTGGTGGC ........................................ GTTTGGATTTTGGAAT ========== ====== ====== ====== ========== ======================================== 3 40 10 TTGTGGCTGTGAGGCCCTGAAATAAATTCAGGGTGATAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-11.50,-11.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [56.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1050,152] Score: 0.18/0.18 # # Final direction: R [0.55,0.68 Confidence: LOW] >NC_018870 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 1072199 35 100.0 40 CGATGCGGGT ................................... TTAATTGTGGTGAACAAGCATGGGAGCTGAGGGTGAAAAG 1072274 35 100.0 38 GGGTGAAAAG ................................... TTTGTCGTTCCGTTCCAGTAAAATGAGTCAAATCCAAC 1072347 35 100.0 40 CAAATCCAAC ................................... TTTCGATCTGTGTCTGCAACTCATCAAACAGCTTTTGCTC 1072422 35 100.0 40 GCTTTTGCTC ................................... ATCTGGGCAACGAACCGTTGAAGATTTACGTTCAACTCCT 1072497 35 100.0 40 TTCAACTCCT ................................... ATTTGCCGACAAAAAAGCGAAAGGGAAGCTGACGTTGGAA 1072572 35 100.0 38 GACGTTGGAA ................................... ATCTCGTCATCCACCGCACCGAAAAGACGACATATCAA 1072645 35 100.0 38 GACATATCAA ................................... ATGTTATCTACGCCGTGCTCTTTGAGTATTTCCACGAA 1072718 35 100.0 TTTCCACGAA ................................... AGATAATTGA ========== ====== ====== ====== ========== =================================== 8 35 39 GTTGCACTCATAACCCCGATGAAAAGGGGACTGAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:51.43%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.20,-7.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [45.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1110,510] Score: 0.18/0.18 # # Final direction: F [0.55,0.27 Confidence: MEDIUM] >NC_018870 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2443641 30 100.0 38 GCCGTCAGGA .............................. TCTGCACATTGGGGGCATAAAGCGACGCCCCCAAAACC 2443709 30 100.0 36 CCCCAAAACC .............................. TTCTGTGTCGAAGTCAGTTCCCCTGAGCAGTCCCTG 2443775 30 100.0 36 GCAGTCCCTG .............................. GGAAAGAAAAACATGAGAAGGTTAAGATGCAAAAGT 2443841 30 100.0 36 ATGCAAAAGT .............................. TCGAAACGTCGCACGAATCTGTCGCTATCCTTAGAA 2443907 30 100.0 38 ATCCTTAGAA .............................. GCATAAATATCCGAGGTGGTGCTTGCCCGCTCATGGCC 2443975 30 96.7 37 GCTCATGGCC .....................T........ AATGCTGGCAAGGTCGTTCTCGCCTGGGCTATGCAGT 2444042 30 100.0 38 GCTATGCAGT .............................. TGAGTTGATAGAACAAATAAAGAGTATGTATGGGAAGG 2444110 30 100.0 35 TATGGGAAGG .............................. TATGCCAGTTTAGGCGAAACGGTATATCACAGATA 2444175 30 100.0 37 ATCACAGATA .............................. ATTTATCATCTTATTGCGGAATGCAATTATGGCACAA 2444242 30 100.0 35 TATGGCACAA .............................. GGTTGTAATGAGAGCCGGGGAATTGAGGCACCGGG 2444307 30 100.0 37 AGGCACCGGG .............................. CCATCCCCCCCGCGCGGAAGGCGAAGCCGCTGCGTTG 2444374 30 100.0 38 CGCTGCGTTG .............................. ATTGCCCTGGCGCTGAAGCTGAGCGTGAAAGATGGAGA 2444442 30 100.0 36 AAGATGGAGA .............................. CCGTAGGGATGTGGCTCGGCAGATACAAGAACACTC 2444508 30 100.0 37 AAGAACACTC .............................. TTCAATTTGGCGATTGGGAGTTTTGGGATGATGAAGA 2444575 30 100.0 35 ATGATGAAGA .............................. CCCCTAAAACTCTATTCAACGTAGTGAGCAAACCT 2444640 30 100.0 35 GAGCAAACCT .............................. GGTGCACACTGCCACTGTAATCGTTGGCATTGTTG 2444705 30 100.0 34 GGCATTGTTG .............................. GCGGTGTACGAGCGTCATCTCTTTGTTAGCCTGG 2444769 30 100.0 37 GTTAGCCTGG .............................. CAAGTTTTTCTCCCGCTTCACCAGCTGGCCGCCCAGG 2444836 30 100.0 35 GCCGCCCAGG .............................. CCCCAGCTTTTGGTCGGGCACGAATGCTTGACCAT 2444901 30 100.0 40 GCTTGACCAT .............................. GTGCGGACTTCCTCACCATTAACCGTATCCCAGCTCGCGT 2444971 30 100.0 38 CAGCTCGCGT .............................. TTTCAAGAATCTCCATTGCCGCCGCTATGTCGGTGGAG 2445039 30 100.0 37 GTCGGTGGAG .............................. GCGGTTTTTGCTTCATTATATACGCATTTTGGCCGGG 2445106 30 100.0 34 TTTGGCCGGG .............................. GCGGTGTACGAGCGTCATCTCTTTGTTAGCCTGG 2445170 30 100.0 37 GTTAGCCTGG .............................. GACTGGAAGAGGGGGAGCCTAAACAGGCTCTCCCTTA 2445237 30 100.0 37 CTCTCCCTTA .............................. GACTGGAAGAGGGGGAGCCTAAACAGGCTCTCCCTTA 2445304 30 100.0 36 CTCTCCCTTA .............................. GCGAATAATAATCATGGAACTTACCTCTTTGCTTCA 2445370 30 100.0 38 CTTTGCTTCA .............................. CTATACCGGTCGCAATAGCCTTAGCAGCCTTGTCCTGC 2445438 30 96.7 39 CTTGTCCTGC ..........................A... GGATACCTGGTCACCGGCGCCGGCAGTTTCTTTCCTAGA 2445507 30 96.7 37 CTTTCCTAGA ..........................A... AGGAATATCCCGTGTTGCGTCTCCGCCGATGTAAATG 2445574 30 96.7 34 GATGTAAATG ..........................A... GCAAATGCTTGAAAGGATTTTTCCGGTGGTGCGT 2445638 30 96.7 37 GGTGGTGCGT ..........................A... GGTGAGAATACTTCGCTACCTACACCAACAAGGTATC 2445705 30 96.7 40 ACAAGGTATC ..........................A... CCGTCAGGATAAAGATACAAATTACCGCTTGTTATCCTGA 2445775 30 96.7 37 GTTATCCTGA ..........................A... GTCAGGATGTATGGAACAATGCACAAGCAGTATATGT 2445842 30 96.7 37 CAGTATATGT ..........................A... GATAGTTTCCTCGGGGAGTGCCTTCCCGCAATGCGGG 2445909 30 96.7 GCAATGCGGG ..........................A... TTCTCGGCTGGCAGGCTGATTTAGAGGAGGTGTTCTAA ========== ====== ====== ====== ========== ============================== 35 30 36 GTTTCAATTCCTCATAGGTACGCTGAGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.67%AT] # Reference repeat match suggestion: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [1-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [152,143] Score: 0/0.18 # # Final direction: R [0,5.37 Confidence: HIGH] >NC_018870 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2439391 30 100.0 35 TCGATTACGG .............................. GCATTGGCTTTCATCTCCCCCTCGGCATGCCCGGC 2439456 30 100.0 36 CATGCCCGGC .............................. CAGGTTTGGCGGTTATTTGTTCCTGAACGACTCCAC 2439522 30 100.0 37 ACGACTCCAC .............................. AGGTAGAGGGGTTGAAGGGAGTTCTCCCCCTGGCCGC 2439589 30 100.0 35 CCCTGGCCGC .............................. GTCAGATAAAAATTCAGCCCGCTAAGGAGGTGTCG 2439654 30 100.0 37 GGAGGTGTCG .............................. TTTCCGTTAGCGTCATATACTATCGCCCCCTTTGTAA 2439721 30 100.0 35 CCCTTTGTAA .............................. GCCGCGGTTGGCGCAGTATACGGGGAAGAAGTTGA 2439786 30 100.0 35 AAGAAGTTGA .............................. CCCCTTTACCTCTCCTTCATCATCCTTTATTGCCT 2439851 30 100.0 36 TTTATTGCCT .............................. TTGATGCTGTTACTGCGGCAATAACCGTAGGTGCGG 2439917 30 100.0 36 GTAGGTGCGG .............................. CTGCTTTCTCCCTCTTTTTTTCTAACTCTAATGCCG 2439983 30 100.0 37 TCTAATGCCG .............................. TACCATGGGACAAATTCCCTGGGATAATCTGCCTTGG 2440050 30 96.7 TCTGCCTTGG ..........................T... GCTCTGGATGCTTGGAAGAAATGCAAGGAACGGAATA ========== ====== ====== ====== ========== ============================== 11 30 35 GTTTCAATTCCTCATAGGTACGCTGAGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.67%AT] # Reference repeat match suggestion: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [330,567] Score: 0/0.18 # # Final direction: R [0.41,5.37 Confidence: HIGH] >NC_018870 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1915105 37 97.3 37 TTCCCTTACA -.................................... CGAAGATATTCATAGAAGAGCCATGCTCCACATTTGG 1915179 37 100.0 37 CCACATTTGG ..................................... GTGGATAAGCACCCTTTGGGGCAGAAGAGACTGTGGG 1915253 37 100.0 35 AGACTGTGGG ..................................... CTCTTCCTCTAATTCTTTTTCGGATGAATGTGAAG 1915325 37 100.0 37 GAATGTGAAG ..................................... TCCAATTCCCTGCCAGCGGTTAAGACTCATATTGGTT 1915399 37 100.0 39 CATATTGGTT ..................................... CATATAATAGGGAGAACGCCAGCCGCTTTTTGCACTTAC 1915475 37 100.0 35 TTGCACTTAC ..................................... CCTTATAGCCGCCAGAACAGATACAAGATATTTTC 1915547 37 100.0 36 AGATATTTTC ..................................... GTACTACTATTGGATTAATTTCTTTCTCCTTAGCGG 1915620 37 100.0 39 TCCTTAGCGG ..................................... CTGCCTTGTCCCGTTCCATGCACTCAACGCACTGGCAGC 1915696 37 100.0 37 CACTGGCAGC ..................................... TTTTTGGATACCATGCGGGCCGACAAGCGACAGGTGC 1915770 37 100.0 40 CGACAGGTGC ..................................... GGCATTTCTGACCCGGCTATCCAGACCAGCGTGGTTTCCT 1915847 37 100.0 34 GTGGTTTCCT ..................................... CCTGAACCCGTCAGTGTGCGGTAATCAGTTCCCG 1915918 37 100.0 37 TCAGTTCCCG ..................................... CACATAAGAGTCCAAATATACATTAATCCTCAGCCGG 1915992 37 100.0 37 CCTCAGCCGG ..................................... GGCGGAAGCGATGTGCAAATGCGGTGGGATTATGGTG 1916066 37 100.0 35 GATTATGGTG ..................................... CGATGTCAACGTACTGGATGTCGTTGGCGGCAGTG 1916138 37 100.0 36 GGCGGCAGTG ..................................... GGCTTGAAACGACATGGGGTAAGATATCAGGATTTA 1916211 37 100.0 36 TCAGGATTTA ..................................... CGCATGACAGCTTGCTGGTAAGTATGTTCTACGACC 1916284 37 100.0 36 TTCTACGACC ..................................... GGTAATTAGTTTGCTGTGGACACTGACCGGCACGGT 1916357 37 100.0 37 CCGGCACGGT ..................................... TGAAGGTCGGACAATGGGAAGGTTTCTGGACGCACAA 1916431 37 100.0 38 GGACGCACAA ..................................... AAGATGAAATACCGGAAGAAGCGGGGTTGATTGTGAGA 1916506 37 100.0 38 GATTGTGAGA ..................................... TCTGGTGGAGCCATTATGTTGACACTAACTTTAACTAA 1916581 37 100.0 39 CTTTAACTAA ..................................... CGAAATAACTGATAGTTAAAAAGGAGGCTAACCAAAATG 1916657 37 100.0 38 AACCAAAATG ..................................... TGACGCGCCTTTCATTGTTTATGTCGAGACTTTTTTGC 1916732 37 100.0 36 ACTTTTTTGC ..................................... AATGCAAACCCCCGCAGGGGCGGGGGCCTGGTGGTA 1916805 37 100.0 38 CCTGGTGGTA ..................................... GGTGTCGAAATCGTCGGGTATGTCGAGAAGGTTTTTTT 1916880 37 100.0 39 AGGTTTTTTT ..................................... AACGGAAACTCCAGCGGGTAATGAAGCGGTTAGGTGTTC 1916956 37 100.0 36 TTAGGTGTTC ..................................... TATTTCGTCCTGGAGTCCGTGGCTATCGTAATGGAA 1917029 37 100.0 40 CGTAATGGAA ..................................... ACCGCCGGTCCGTGAGGTATCTGATGTGCAGAGCTAAACT 1917106 37 100.0 35 GAGCTAAACT ..................................... TATATGTCTTGATGTTGACGATGATGGCAAAATAG 1917178 37 100.0 38 GGCAAAATAG ..................................... GATATGGGCAAGGATCGTTGGCAACCAGCGGCACTTGC 1917253 37 100.0 37 CGGCACTTGC ..................................... GAAACCTGGAAGAAAATGCTTGCTCCTATGAGTATTC 1917327 37 100.0 37 ATGAGTATTC ..................................... GAGAGTAGGACGCTCCCAATATTCCTTGACCAAAGCA 1917401 37 100.0 37 GACCAAAGCA ..................................... ATCGCTGGCCGCCACCGCCCCAATGTCAGCAGGGGTC 1917475 37 100.0 36 AGCAGGGGTC ..................................... AGCGGGAACATCTCGCCTTCCCGGAGCAGGTAAATC 1917548 37 100.0 35 CAGGTAAATC ..................................... ACTTCGACGCATCGGCAACCACGAAAGACGTGGCC 1917620 37 100.0 36 AGACGTGGCC ..................................... ACATTCACGGCAGCCTGGGCTTCTTCCAGCCCGGCC 1917693 37 100.0 36 CAGCCCGGCC ..................................... AGAAACGTCCGCAGTGAGTCCTGTCGGCGCAGGAAC 1917766 37 100.0 37 GCGCAGGAAC ..................................... AATGGCGGTATGGAACTTTGTAAGGTTGTCGAACTTA 1917840 37 100.0 36 GTCGAACTTA ..................................... ACCTATAGCTGGGGGACGGTGCACTCCACCCAAGCG 1917913 37 100.0 37 CACCCAAGCG ..................................... TACATTCTTTGCTGTCCTTGAAGAAGTTTAGTTAATT 1917987 37 100.0 39 TTAGTTAATT ..................................... TTACACAAGGCTAATACTCCATCAAAGTCATCTTTCTGC 1918063 37 100.0 35 ATCTTTCTGC ..................................... GTACCGGATGAGCGTGTATCTTCTGTATGAAGAGT 1918135 37 100.0 36 TATGAAGAGT ..................................... CCGAACACCCTGCCCTAGGCGAACGAATTGGATGAA 1918208 37 100.0 36 ATTGGATGAA ..................................... AATGAGAAAGAACGAGATTGTGAACTATCCGATTCA 1918281 37 100.0 37 ATCCGATTCA ..................................... TTTGGAGCGAGAAGTCCACGAGCTTTGGAATATGGAA 1918355 37 100.0 36 GAATATGGAA ..................................... GCTAATAAAAGGCCGAATTTCTCGGCCTACGTCAAA 1918428 37 100.0 38 CTACGTCAAA ..................................... CGCAAGGGTGGGTGATAGTATATATGTTTTTATTCCAG 1918503 37 100.0 37 TTTATTCCAG ..................................... TCCTTAAGGGGTCTGCCATCACAAGAGCAGAATAAAG 1918577 37 100.0 37 CAGAATAAAG ..................................... TGTACGTTCATCATCAGTCTGTTTTATCTTTGTTACA 1918651 37 100.0 38 CTTTGTTACA ..................................... CCCTGCCACAGGGGTTCGACAAGCACGTTTCCCACGCC 1918726 37 100.0 37 TTCCCACGCC ..................................... GCCGGTGCCAAAGGCACGCCACAGGGTGCAACTTTAT 1918800 37 100.0 37 GCAACTTTAT ..................................... CCTTCGTAATCAGCATCCCATCCTTCCACTTTGTAAA 1918874 37 100.0 38 ACTTTGTAAA ..................................... CAGATGGTCCGACTACGTGAGAGACAGCCTCGAAATCG 1918949 37 100.0 35 CTCGAAATCG ..................................... GCCGCGAGGCGGACAAGTGGGCGCCGAACTTCGTC 1919021 37 100.0 38 GAACTTCGTC ..................................... TGCGTTTTTCAGCTTGAGCCGTGGCAGCAGTTTATCGT 1919096 37 100.0 35 AGTTTATCGT ..................................... ACAATCCAGCAGCTGACAACCACCCAGGACGCCGA 1919168 37 100.0 36 AGGACGCCGA ..................................... TTTGAAGCTCAGTTCGTCCGGTCGACTCCAGAAGGA 1919241 37 100.0 35 TCCAGAAGGA ..................................... CTTTCAAGTACCCCTGCTTTGCCCAGGCCTTATAC 1919313 37 100.0 37 GGCCTTATAC ..................................... TAGCCAGATTCGGACTGTCATTTTGAACGGGGAGCCC 1919387 37 100.0 38 CGGGGAGCCC ..................................... GCGACATATTCACGTTGCAGCGGTGGGTCCATAGACAC 1919462 37 100.0 35 CCATAGACAC ..................................... TTCATTTCGGGTACGTGGACTAACAGCTGAGGAAA 1919534 37 100.0 38 GCTGAGGAAA ..................................... TATGAAAGAATCCATCGAAAACCAAATTGAAGAAATCG 1919609 37 100.0 35 GAAGAAATCG ..................................... ATAGGTGGTACCGTTAATCTGATATCCACCCTTCA 1919681 37 100.0 36 CCACCCTTCA ..................................... ATACCCTTTGTAACAAAATTATTCGTGTGATTATAC 1919754 37 100.0 37 GTGATTATAC ..................................... GGAGTAAGTTCAGTCAAGGAGATTGCGCCGTGAAAGG 1919828 37 100.0 36 CCGTGAAAGG ..................................... CGGAACTCCCATTCCTCCGGGAAATACTTGGGTAAG 1919901 37 100.0 36 CTTGGGTAAG ..................................... CAAAATTCTGCCTTATACCTGGAATATTGGCCGAAT 1919974 37 100.0 38 TTGGCCGAAT ..................................... GACGGCCGAACTTGGCCGCGGCGGCCGCCAGGGCGTCC 1920049 37 100.0 37 CAGGGCGTCC ..................................... CAAATACTCAATGGGAGTGGCTTTGCGGCTGTTGACA 1920123 37 100.0 39 GCTGTTGACA ..................................... TAGCGGAAGCGCAAGGCTCAGAGCTTGAGAAGCTGTATG 1920199 37 100.0 39 AAGCTGTATG ..................................... TAAAAAGGGCTGGGAGGAGGAGAAATATGACTTCATGTA 1920275 37 100.0 35 ACTTCATGTA ..................................... TCCTTCACCCAGGTCATGCTATCCACGCTATACCA 1920347 37 100.0 38 CGCTATACCA ..................................... GGAGCAAAGTTCCCCGCTCCGCTCAACCTATAACAGGA 1920422 37 100.0 36 TATAACAGGA ..................................... AGAGAAACGAGGGAAAACTTTTATGCTGTTGGAGAT 1920495 37 100.0 35 TGTTGGAGAT ..................................... CGTGCTTGGCGTACTGGTCCAGCTCGTTCAGATAG 1920567 37 100.0 39 GTTCAGATAG ..................................... ACTGTGACCCTTCCACGCTTGGGCATCCCAATTACCCTG 1920643 37 100.0 35 AATTACCCTG ..................................... ACCTCCGGGTGGATGCCGCCGGCGCCGACCTGACC 1920715 37 100.0 37 CGACCTGACC ..................................... GCGGAAGAACGCTGAAAGACCCTATTTCAATTAAGAT 1920789 37 100.0 37 CAATTAAGAT ..................................... GTATTTGGCTTATAAATCTCACGTTGGCTGGGTTGCA 1920863 37 100.0 37 CTGGGTTGCA ..................................... TCCTCAGGTTTTTTAGAATTACAGCAAATAACTTGAT 1920937 37 100.0 37 ATAACTTGAT ..................................... GGTCCTGAAATTGAGGGTGAGGGTCATAGCGTCAAAA 1921011 37 100.0 36 AGCGTCAAAA ..................................... AAAAGGAAGCGCGGTGCCTTTAATCGCAATAGTGGA 1921084 37 100.0 36 CAATAGTGGA ..................................... TTAATGTCTGCAACGAGAGCGAATTTTTCAGACTTC 1921157 37 100.0 38 TTCAGACTTC ..................................... AAGATTAAAGCAAATAATGGAGGCTCGTAATCTGAGAC 1921232 37 100.0 37 AATCTGAGAC ..................................... CGCCAATTATGTGACCGCCGCACTGCAGGGTTAAGGA 1921306 37 100.0 36 GGGTTAAGGA ..................................... CAAATTCAAGCCTGTCGTCCTGGGTATCAACGCCAC 1921379 37 100.0 36 TCAACGCCAC ..................................... TGAAATGAAGTTGACGCTGAAAATCACTTTGACTCA 1921452 37 100.0 37 CTTTGACTCA ..................................... GATGTAGTCTTCTTCTCCAGGAAGGGAGAAAACGACC 1921526 37 100.0 37 GAAAACGACC ..................................... TTCTGATATGCGGATATATCCGACTGTGTTTTACTGA 1921600 37 100.0 38 GTTTTACTGA ..................................... GTTGCTAATAGGGTTTGTATCGAGATACGCGAATATGA 1921675 37 100.0 38 GCGAATATGA ..................................... ATAATGCAAATTGCCTGGGCTATGGCCAAGGCCGATGC 1921750 37 100.0 37 AGGCCGATGC ..................................... ATTTATATCAAATTTCATTTCTTTGACGGTGAAAGCC 1921824 37 100.0 39 GGTGAAAGCC ..................................... CAGAAAGAGATAGTTTGTTCAAGCTAGCAGACCAGCGAA 1921900 37 100.0 39 GACCAGCGAA ..................................... GCCGGCGGCCGCTGAACTGGCAAACTTATATATCGAACT 1921976 37 100.0 36 ATATCGAACT ..................................... TCATAAACATATTTACAGGCCAGTTTGTAGTCGGTA 1922049 37 100.0 36 GTAGTCGGTA ..................................... AATTGAAAAACCCCTGATTCGTCTTTCCTGGCCGTT 1922122 37 100.0 35 CCTGGCCGTT ..................................... TGGAAAAACTTTATATGACCGTTACGGTTAATTAA 1922194 37 100.0 37 GGTTAATTAA ..................................... CCCGACCGGGGGATAACTGGCACCTTCCTGGTACAGA 1922268 37 100.0 35 CTGGTACAGA ..................................... AACTAAGAGAAACCGGGCTGACCGCCGAGCAGGTA 1922340 37 100.0 38 CGAGCAGGTA ..................................... TGCTTTGAATTTGTCCAATGCAAGGTTTGAATTGCAAA 1922415 37 100.0 36 GAATTGCAAA ..................................... CGTGGTAATATGATATCGGGAGCCGTTTGAGAGGAG 1922488 37 100.0 36 TTGAGAGGAG ..................................... AGCTCAACGAGCTGGCGTTGTCCTTTAATCAGGTTG 1922561 37 100.0 36 AATCAGGTTG ..................................... CCTGGCGTAAGCGATCAAATTGGCTCTCCATGCCCT 1922634 37 100.0 38 TCCATGCCCT ..................................... AGAATACCATCTCAAAGTCCTCGCCTCGCTCCCAGAGC 1922709 37 100.0 38 CTCCCAGAGC ..................................... GGGTGTGGGCACGAAGCATTCAAAGTGTACTTTGAAGA 1922784 37 100.0 37 ACTTTGAAGA ..................................... CAGATCGGAATTCTATGGCGCCGCTACTGCCGGATTG 1922858 37 100.0 38 TGCCGGATTG ..................................... CCCTGAAGAGTAAAAGAAAACACAATAGCCGTCCGGGA 1922933 37 100.0 36 CCGTCCGGGA ..................................... GATTTTGTTTGTCGAACCATATCATCCGACTTCCAC 1923006 37 100.0 38 CGACTTCCAC ..................................... AGCCCGTTGATATTTTGAATTGCACATACTTTACATTA 1923081 37 100.0 36 CTTTACATTA ..................................... AGCAGTACGGACGGGATTAAGAAGGGGTGAATTGTT 1923154 37 100.0 38 GTGAATTGTT ..................................... GAGTGCAGCAGGCCAGCCAGTGCGGGCTTCAGCGATGA 1923229 37 100.0 37 TCAGCGATGA ..................................... GAGTTATTATTGGCGCATAGCTGCCCGTGATACAACA 1923303 37 100.0 36 TGATACAACA ..................................... ACCTATATCCCTTGGTATATTGGGGCTTTGATGAAA 1923376 37 100.0 TTTGATGAAA ..................................... CGCATCAGGC ========== ====== ====== ====== ========== ===================================== 113 37 36 CTTTCAGTCCCCTTTTCATCGGGGTAATTAGTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.05%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.00,-8.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [53.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [25,369] Score: 0.18/0.18 # # Final direction: R [0.27,0.96 Confidence: MEDIUM] >NC_018870 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2449772 30 100.0 38 TCTTTGGGCA .............................. ACGGAACCACTCCTGCCAATATGCTTCTTTTTCGTTTC 2449840 30 100.0 37 TTTTCGTTTC .............................. AGAGCAAAGCAATATCCGGGGGCGTCACATGCTTACA 2449907 30 100.0 37 CATGCTTACA .............................. CCCGCTTTCGGAGCTACCGGACGAACCGGCGGGATTC 2449974 30 100.0 36 GGCGGGATTC .............................. CCGAAACTGTATAGGAGAGAAGTGCGGGTGTTTCGA 2450040 30 100.0 35 GGTGTTTCGA .............................. TCCGGGAAAGAAACGAAGTAATTACTCCCCTTACC 2450105 30 100.0 38 TCCCCTTACC .............................. GAGGAAGCTACCGTTTCGTGTCGTATTATGATTTATTG 2450173 30 100.0 35 TGATTTATTG .............................. GCATGCCCCGGTAAGTATTATCCGCTGCAGGAGAT 2450238 30 100.0 36 TGCAGGAGAT .............................. AAAAAGGGAGGAATGCGAAATGAGGAAGAACGTCGC 2450304 30 100.0 36 AGAACGTCGC .............................. GACAAGCACACATTCTTTGCTGTTCTTGAAGAGATG 2450370 30 100.0 35 TGAAGAGATG .............................. AACCAGATTTGGAAGAGGGTGTTGTCCTATCAAAG 2450435 30 100.0 35 CCTATCAAAG .............................. TCCCCGGCCGGCCGGTGCCTGCCGCAAGGATGACG 2450500 30 100.0 35 AAGGATGACG .............................. TGGAACGACGCAGGCCCGTACTGGCGGATTTCGTA 2450565 30 100.0 36 GGATTTCGTA .............................. AGGAGAATTTTCCTTTGTTTCCCTTGCCCCTGTTCT 2450631 30 100.0 38 CCCCTGTTCT .............................. TGGACTACCAAATTTAAATAAGCCATTGCGAGAGAGCA 2450699 30 100.0 35 CGAGAGAGCA .............................. AAGAAAGCTCTTGCTACGTTGCATGGAGGCGTTTC 2450764 30 100.0 36 GAGGCGTTTC .............................. CTCACTGCGGCGCGATCCGGCGTTATGAGCGGAGGA 2450830 30 100.0 37 GAGCGGAGGA .............................. CTTCCTAATGAACCATCCCAATAAACTCACCGTCAAG 2450897 30 100.0 36 CACCGTCAAG .............................. GGAGAGTTTGCTGCTGATATATCGATTGATCTTCAT 2450963 30 100.0 38 TGATCTTCAT .............................. CCCGGACAATACCCTCATGATACCGTCCTCGGTTCTTC 2451031 30 100.0 TCGGTTCTTC .............................. ATCGCCTCCT ========== ====== ====== ====== ========== ============================== 20 30 36 GTTTCAATTCCTCATAGGTACGCTGAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [153,91] Score: 0/0.18 # # Final direction: R [0,5.37 Confidence: HIGH] >NC_018936 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 778106 36 100.0 30 AGTCTACGAG .................................... GGGTGGTTGGCTGACGCATCGCAATATTAA 778172 36 100.0 30 GCAATATTAA .................................... AGGAATATCCGCAATAATTAATTGCGCTCT 778238 36 100.0 ATTGCGCTCT .................................... TAAATTTGTTTAGCAGGTAAACCGTGCTTT ========== ====== ====== ====== ========== ==================================== 3 36 30 GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: F [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-2.20,-0.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [104,180] Score: 0/0.18 # # Final direction: F [0.87,0 Confidence: HIGH] >NC_018870 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2204611 30 100.0 36 ACACAGCAAG .............................. GGTGGTAAGTTGGGCTGGGCCTTTGTGGGATAGTGC 2204677 30 100.0 36 GGGATAGTGC .............................. CTTTTGCGGAGCTTCCTATGAGTGGGCCATATCCGG 2204743 30 100.0 36 CCATATCCGG .............................. ACAGGAACCATTTCGTCCGACATGGTCTCTACCTCC 2204809 30 100.0 36 CTCTACCTCC .............................. GATCCCCCGCCCTCCGCTGCAGGCGGTGAACAGTGT 2204875 30 100.0 38 TGAACAGTGT .............................. CAGAGAAAATCAGTAAAATCAAGGATTGACGGGGCTTT 2204943 30 100.0 36 ACGGGGCTTT .............................. TCTTAATTACTAGGCGTTGCCGCTGTCACAACGCCG 2205009 30 100.0 35 CACAACGCCG .............................. CAAGTTGAGCCTGCTGGTACGCCGTCATATTCTGA 2205074 30 100.0 38 CATATTCTGA .............................. CCGGCAACAGGAAGCAGAAATCAAACCGGGGGAAAAAG 2205142 30 100.0 37 GGGGAAAAAG .............................. TGCCATCAAGCAGGGCCAGGACGCATGGACGACCGGG 2205209 30 100.0 35 GACGACCGGG .............................. CGCGGAGCGAGTACGAGTTGAGAACCTATGTGGGC 2205274 30 100.0 36 CTATGTGGGC .............................. TCGGCACCACGAACCCGGATTCGCCTTATCACTGGC 2205340 30 100.0 36 TATCACTGGC .............................. TCAACCTGGCGGTGGCGAAGAAGCTTGCCGGCTATC 2205406 30 100.0 37 GCCGGCTATC .............................. GGTAGATGGGTGACGGTCAGCACCGGATAGGGCGATG 2205473 30 100.0 37 TAGGGCGATG .............................. CCGGCGTGGCCGGACACCGTGCCGGTTTTCTGTTCGG 2205540 30 100.0 37 TTCTGTTCGG .............................. GAGGGGATGAACCGGTTGGCAATCCGTAAAAGCTTGA 2205607 30 100.0 39 AAAAGCTTGA .............................. TAAATCAGCGCTTACTGGTAGACGCCTTTCTGAAAGCCA 2205676 30 100.0 39 CTGAAAGCCA .............................. ATCCGCCGCAGCTACGAGGAGGAGGTGTGATGATGCGGG 2205745 30 100.0 38 ATGATGCGGG .............................. CCTAAACGGTGATAGTTTATGAGGGTACGGATACTGCG 2205813 30 100.0 41 GGATACTGCG .............................. TTGTCCACGCACCCGGAGGCCGTGCATGTCCTCGTAAGCTT 2205884 30 100.0 35 TCGTAAGCTT .............................. TACTATTGCTGGTATTATTCTTAAACACTGGAAAG 2205949 30 100.0 35 CACTGGAAAG .............................. CGCGGAGCGAGTACGAGTTGAGAACCTATGTGGGC 2206014 30 100.0 36 CTATGTGGGC .............................. TCGAGGAAGGCGGATGGCGCTGGGTTAGGGATGAGA 2206080 30 100.0 37 AGGGATGAGA .............................. TCATTGAAAACGCCGTGGCTTTCTTGATGCTTTCTGG 2206147 30 100.0 37 TGCTTTCTGG .............................. GGGCAGGTGGCCCTGACAAAGAGGACATCGACTGGGG 2206214 30 100.0 36 TCGACTGGGG .............................. GGATGGCAGAAGTATACAAGCAACCGGCAGTTGCGG 2206280 30 100.0 38 GCAGTTGCGG .............................. CTGCATAGCCTTTTTCCACTCCGGCTCCAGCACTTCAG 2206348 30 100.0 36 AGCACTTCAG .............................. CCAGGGTTCTTTGAGAACCTGGGGAGCATAGAGCCA 2206414 30 100.0 36 CATAGAGCCA .............................. CCACTAGGTACTGCCCGAAACTTTTTGCTTCAGCTT 2206480 30 100.0 37 GCTTCAGCTT .............................. AAGCTCAGTTGCGAACGTATGACGGAGAGAATGCGGA 2206547 30 100.0 36 AGAATGCGGA .............................. CTTATGTGCCGGGAGGTGGTGGCCGGTGGCGGAAGT 2206613 30 100.0 37 TGGCGGAAGT .............................. TTCAGTCCGGCCAGGAATTCCTTCCATCCTACACTGT 2206680 30 100.0 36 CCTACACTGT .............................. TCACCAGGTACTTCTTCGTGCCGCTCTCGCCGCCCT 2206746 30 100.0 38 TCGCCGCCCT .............................. CTGGATTGGCGAGGGCGAGGAAAAACCGGAGACCGGCG 2206814 30 100.0 36 GAGACCGGCG .............................. TGTTGAAACGGCTGCTCTGGAAGCACTTGAGATGAT 2206880 30 100.0 36 TTGAGATGAT .............................. GTTAGGAAACTTTATGGGGGGGGTGTCTGATGCCTA 2206946 30 100.0 36 CTGATGCCTA .............................. GGATCCGGAAGTTAGTATCGGTGGTTAGGGGAATGG 2207012 30 100.0 37 AGGGGAATGG .............................. ACATGGGTAAGGTCTGGGCATTCGGTCCTGCTTTACT 2207079 30 100.0 36 CTGCTTTACT .............................. TAATTGAGTACCTGCAGGCTATGGAGAACGGGGAAG 2207145 30 100.0 37 AACGGGGAAG .............................. TCCTGAACATCTGGCCAGAAGCGCTGACTTTATGATT 2207212 30 100.0 37 CTTTATGATT .............................. TTGCCAAAAACCTGCTTTCAGGCAAAGCTGATTACCA 2207279 30 100.0 36 CTGATTACCA .............................. CCAGGGTTCTTTGAGAACCTGGGGAGCATAGAGCCA 2207345 30 100.0 36 CATAGAGCCA .............................. CGCTACTCGTCCTGCTCCTGCATGGACGAGGACGAG 2207411 30 100.0 36 CGAGGACGAG .............................. ATATCTCATTTCTGGGTCTCTGGTGAGGCGACCGAT 2207477 30 100.0 37 GGCGACCGAT .............................. CGTATAGGAGATAGTGCCGTCTCCGCCCTCCGCGCTA 2207544 30 100.0 37 CTCCGCGCTA .............................. TTGAACGGATAGGTGGAGATACGCTTCCCCCGATTGG 2207611 30 100.0 36 CCCCGATTGG .............................. GTTTAAAATGCGAAGAAAAGGAGGCCGAGCTTATGA 2207677 30 100.0 35 GAGCTTATGA .............................. CCAAACAACCTAATCAGAAGTTACTCGATGAGGGT 2207742 30 100.0 39 CGATGAGGGT .............................. TACTGATGAAATGCTAGATTATTGGGCATCAAAACGCAT 2207811 30 100.0 36 CAAAACGCAT .............................. TTGGATAAGAAGTAGGGAAATAGTTTTAAGGATAGG 2207877 30 100.0 36 TAAGGATAGG .............................. TCTCGAAAAAATCAGCCACTTTTTCAACAGGAAACG 2207943 30 100.0 36 ACAGGAAACG .............................. TGCCGAAATGGATTTAGACCATAACCTGGTTATCAC 2208009 30 100.0 35 TGGTTATCAC .............................. GCCCAGATCGGAACCTGTCCCTCACCCCGGCTTGT 2208074 30 100.0 39 CCCGGCTTGT .............................. AGGGGTATTCTCCTGACGTTCTCGAGGAGGAGACTACGC 2208143 30 100.0 37 GAGACTACGC .............................. CAAAAAGGGGGATCGCAGACTATTCATAAAAAAACAA 2208210 30 100.0 35 AAAAAAACAA .............................. TTCAACCTCGCGCCGCGCCTTCTCCTGCGCGGCCT 2208275 30 100.0 35 TGCGCGGCCT .............................. AGGCGGGAACTGTATCGTAGATATTTCTAGAGCCA 2208340 30 100.0 37 TCTAGAGCCA .............................. AAGGCGTTGACTATGCGGAGGTGGAGGAGTACCTGCT 2208407 30 100.0 36 AGTACCTGCT .............................. GCCGGTAACCTCTTGAGCGAGTGCCTTGTTACCTTT 2208473 30 100.0 36 TGTTACCTTT .............................. TAATTTGCAAACCCAAATGATGCTACCGTTTTAACC 2208539 30 100.0 37 CGTTTTAACC .............................. CGGGATTTTGTGAGATGTGGACCCTGGGAGGGCCTGA 2208606 30 100.0 38 GAGGGCCTGA .............................. CGATAAGTTGATTTTTGAGTTTGAGGACCCAGTACCAA 2208674 30 100.0 35 CCAGTACCAA .............................. GCCAAATGGAATACTTTCCGCATCGCTGGTCCTCC 2208739 30 100.0 36 CTGGTCCTCC .............................. CCGTATTAAGGGCACGCTCATAGTCCCGTGTGGCCA 2208805 30 100.0 35 CGTGTGGCCA .............................. TTTGTTCAAGTCCTTAAATTGCATCACACCACCAC 2208870 30 100.0 36 ACACCACCAC .............................. CTTGGATTAAGACGAAAACAAAAAGCCCCGGCCTCT 2208936 30 100.0 36 CCCGGCCTCT .............................. GACCGGCGGCGAGGGGGTACCGGTGAAGAATGCGAT 2209002 30 100.0 37 AGAATGCGAT .............................. ATGAGAATTTGCCCGGTAGCATCGGAAACCAGTGCTT 2209069 30 100.0 37 ACCAGTGCTT .............................. CAGCGTTCTTCTTCTCCCACTCTACCCGGTACGCCTC 2209136 30 100.0 35 GGTACGCCTC .............................. TTCTGGGCCTTTTCCATCACGCTCGCGAATTTCTC 2209201 30 100.0 36 CGAATTTCTC .............................. GGCCGTAGCAACGAAAAACTGGTCAAGGACTTGATC 2209267 30 100.0 39 GGACTTGATC .............................. AATTACACTTGAGGTTGACGAAGAAGATTTATTCCAAAT 2209336 30 100.0 34 TATTCCAAAT .............................. TTGATCAGAATATCGCCGAAGTCAAGCACACCGG 2209400 30 100.0 36 AGCACACCGG .............................. GAGCACGTCCTGGCCGCCGCCGGAAACAGATACGTT 2209466 30 100.0 37 CAGATACGTT .............................. TTCTCGGCCGGCAAAATTTCGATTTTACCCCTATCAT 2209533 30 100.0 36 CCCCTATCAT .............................. GCAGGTCGCAGGGTGACCGACGGCCAGCTTTTGTCG 2209599 30 100.0 36 GCTTTTGTCG .............................. GTCTTCTTCCAGATCTGCCGTGCCTCATCATCTAGC 2209665 30 100.0 36 ATCATCTAGC .............................. GTGTTGAAATTCCTGGACGCCTTCTACTTCGGCGAC 2209731 30 100.0 38 CTTCGGCGAC .............................. TAGCGGAAAGTGGACTGGTTGCAATTTCGATTGGCTGA 2209799 30 100.0 37 GATTGGCTGA .............................. CATTATAATTCTTGCGTAGCTTTGCGCCGCCTTGACA 2209866 30 100.0 37 CGCCTTGACA .............................. GTTACGGCCCCAATTTTGAGCCGTTTTACACGGATTT 2209933 30 100.0 37 ACACGGATTT .............................. GTGGGTCAAGGCCAACCCGGTTCTGCAGGAGGACAAC 2210000 30 100.0 35 GGAGGACAAC .............................. GCGTACGTGCAGTCATAGTCATCATCATAATCAGT 2210065 30 100.0 36 CATAATCAGT .............................. GGTGTAATGTGAGAATAGGTTTAGATTATAGGATTA 2210131 30 100.0 36 TATAGGATTA .............................. CCTGCAAACCTTCTACCACCGGCACCTCATCACTGG 2210197 30 100.0 36 TCATCACTGG .............................. AAACAAACTGCTCTATTTTCTTTTCTTCCATTTTAT 2210263 30 100.0 37 TCCATTTTAT .............................. GGCACTTGGCACATGATCAACGTCAAGCCCGACATCG 2210330 30 100.0 37 CCCGACATCG .............................. GAAGGGGAGGCTGAATTATATGACGCTGGATGAATAT 2210397 30 100.0 38 GGATGAATAT .............................. CCGGGATTGTGGACTGTTGGATTTTATGACCCAAATGG 2210465 30 100.0 36 ACCCAAATGG .............................. TATATGTCAGTAGTATTATCGGTGCGGCCAAGAAGA 2210531 30 100.0 37 GCCAAGAAGA .............................. GCAACACGCCCTAGGTACATAAAATATCTACATTTTT 2210598 30 100.0 35 CTACATTTTT .............................. CGGTTATGATGCCTGGCTGGTCGAGACCGAGGGGG 2210663 30 100.0 35 ACCGAGGGGG .............................. TCCACTATCCGTGTAAGAATGTTGAGATGTGCTGC 2210728 30 100.0 35 GATGTGCTGC .............................. ACAGTCATACCTAGACATACTACACGGGCGCATCT 2210793 30 100.0 36 GGGCGCATCT .............................. GCAATCATCCAAACATCAATATGGTGCTAACAGACT 2210859 30 100.0 36 CTAACAGACT .............................. TAGAAAGCGACCTGGTGCTGTTGAGGTATCTGAAGG 2210925 30 100.0 36 TATCTGAAGG .............................. CCTCCCAGTATAGCTCGGCTACTGCGATGAAATCAC 2210991 30 100.0 34 ATGAAATCAC .............................. TTTCCCACAAAGATAAAGCTGAGCGGGAAATATT 2211055 30 100.0 37 GGGAAATATT .............................. TCCCACCCCTTTTAATAATAGGGAGCCTGCTTTTCCT 2211122 30 100.0 36 TGCTTTTCCT .............................. CCTTACAGGTATCGCATTAACCTTCCTCAAACCCTC 2211188 30 100.0 37 TCAAACCCTC .............................. GCTCTTCGGATTTGACCATCCAGTCCCTACTGTTGAA 2211255 30 100.0 36 TACTGTTGAA .............................. TTAGGTAAAAAGGTGGTCTTCTAGTTCCAGAAATTC 2211321 30 100.0 36 CCAGAAATTC .............................. GTGCGAGGTAAATGTTAGGAGCAGATTGATAGTTTT 2211387 30 100.0 36 TGATAGTTTT .............................. ATGCTCCTAGGTATGGATGTGGTGAAAGATGACATG 2211453 30 100.0 37 AGATGACATG .............................. TTGCACCTCCCACCTTGCGGCCACGCCGTTGGCATCG 2211520 30 100.0 GTTGGCATCG .............................. CAGTTCGGGG ========== ====== ====== ====== ========== ============================== 105 30 36 GTTTCAATTCCTCATAGGTAGGCTGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [58.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [325,704] Score: 0.18/0.18 # # Final direction: R [0.27,5.05 Confidence: HIGH] >NC_018870 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 2447944 32 100.0 33 ACGAGGCTCT ................................ GATATTGTTCAAACTTTGCATTCATTTCGTTCC 2448009 32 100.0 35 ATTTCGTTCC ................................ CATGTACTTCATAATATCATCGAAGAACGTTTCTT 2448076 32 96.9 AACGTTTCTT ...............................G AAATATACCATGCGGGGGTGTTTCAGTTCCGGTTCA ========== ====== ====== ====== ========== ================================ 3 32 34 TGTTTCAATTCCTCATAGGTACGCTGAAAACC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:59.38%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [165,300] Score: 0/0.18 # # Final direction: R [0.41,5.14 Confidence: HIGH] >NC_018870 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2453564 30 100.0 37 GTCATCTGCA .............................. TTTGACCACCACCTCATCCTTAGCAAATGCTAACGGA 2453631 30 100.0 36 TGCTAACGGA .............................. GCTCTTCAAGCGGAATCCCATCATCATTCACAACAT 2453697 30 100.0 38 TTCACAACAT .............................. GATGCATCTGAAGCACTTAAATACGCGGAGAAGCTCAA 2453765 30 100.0 35 AGAAGCTCAA .............................. GGAGCCTGCCGGCGGAGTAAAATAGGCTTGCCCGA 2453830 30 100.0 36 GCTTGCCCGA .............................. AATGAAAGGAGGAGGAAGTAAGGTGTTCATGGTCGT 2453896 30 100.0 36 TCATGGTCGT .............................. TCCTCCTCCTTTCATTCAAATTCCAGCGTAATCCTG 2453962 30 100.0 39 CGTAATCCTG .............................. TCAAAGTACATCACGAAGGAGTTAGGTCTATATATACCA 2454031 30 100.0 37 ATATATACCA .............................. CGACAAGCACACATTCTTTGCTGTTCTTGAAGAGATG 2454098 30 100.0 36 TGAAGAGATG .............................. TTCATCAGCACTCCTTTCATTTCTTTTTCGGATGTC 2454164 30 100.0 36 TTCGGATGTC .............................. GTTAACCAAGGAAATGCAGTAGCTGAGCAGTCTCCA 2454230 30 100.0 36 GCAGTCTCCA .............................. AGTTGAAGGCGATGCGCGGTCGGATGTGGAGCTTTA 2454296 30 100.0 36 TGGAGCTTTA .............................. AAAGGAGATTGATGACCTCTACCTTGAGAATCCTGC 2454362 30 100.0 36 AGAATCCTGC .............................. GGAATCCTTTACGGATGGGGCTGCGGTGATTACGGA 2454428 30 100.0 36 TGATTACGGA .............................. CAGTTTCGCCGGGATAAATATTCGCCGCCCATGCCG 2454494 30 100.0 37 GCCCATGCCG .............................. ACCAGTGCGTCCAACTCTCTGCCGGCTTCCAGTTTGT 2454561 30 100.0 37 TCCAGTTTGT .............................. CGTTGTAAGGTTTAACGAGTTCTTTACGTTTTTCTTC 2454628 30 100.0 36 GTTTTTCTTC .............................. TCAGTACCATCTGCATTATATGTCGTAAAAGTATAA 2454694 30 100.0 36 AAAAGTATAA .............................. GGAAGAGATGCAATCCCTCCCGAAAGTGTAAGCTGA 2454760 30 100.0 42 TGTAAGCTGA .............................. TCAGAAAACTACCATCTGACCACCAGACAGGTCTTACACTAG 2454832 30 100.0 37 CTTACACTAG .............................. CAGCAACTGACATTTCAAGACCTCCTTAAACTTAATT 2454899 30 100.0 37 AAACTTAATT .............................. AATGATTACGGGAACAGATTCCTCGGTGGTTACTATG 2454966 30 100.0 39 GGTTACTATG .............................. TGGCGTATCGTGCCGCCGTGCCCCGAGAATCGCTCACGC 2455035 30 100.0 39 TCGCTCACGC .............................. GAAAGGAGTGCTGATGAATCGTGACTGCTCGTGAGTTCT 2455104 30 100.0 38 CGTGAGTTCT .............................. TTATGCGTCCCGATGCTGAGTATGAAGTTATCGAAGTA 2455172 30 100.0 39 TATCGAAGTA .............................. CCGGGCCGGTAAAGCGGATTCTCCTGGATCTGGTGGGGT 2455241 30 100.0 36 CTGGTGGGGT .............................. TTCTCCCTCCTGCTTTTATGAGTTTTTTAGCGTTTC 2455307 30 100.0 TTAGCGTTTC .............................. ACATTTTCAA ========== ====== ====== ====== ========== ============================== 27 30 37 GTTTCAATTCCTCATAGGTACGCTGAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [106,341] Score: 0.18/0.18 # # Final direction: R [0,5.82 Confidence: HIGH] >NC_019042 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1130921 36 100.0 30 CACTTAACTA .................................... ACATCTTGGATGAGGATAACGTCCCAAAGG 1130987 36 100.0 30 GTCCCAAAGG .................................... AAGTTGAAAAATGGAGACCACTCGTTGAAA 1131053 36 100.0 30 CTCGTTGAAA .................................... CAGCTAGTGGCTATGCGGAGTTACTTATCC 1131119 36 100.0 30 TTACTTATCC .................................... ACAATAGTCCGACCTTGCGCATATCTTTGC 1131185 36 100.0 30 ATATCTTTGC .................................... AGTGACCCCGTCGTTAACCGTGTTGTTGTA 1131251 36 100.0 30 TGTTGTTGTA .................................... TTGGTATTCGTGGGGTGCTTGAATGAGCAA 1131317 36 100.0 30 GAATGAGCAA .................................... TAGATTTTTTATACTCGCTCTCTGAGTATG 1131383 36 100.0 30 TCTGAGTATG .................................... CAAGAGCGAGGGCATTTGTCTTATCTAATT 1131449 36 100.0 30 TTATCTAATT .................................... TTTACACGTTTTAGAAATTGCCTATCGTAC 1131515 36 100.0 30 CCTATCGTAC .................................... ACACCAACGGTCGTTTTCCCAGCGGCAGTT 1131581 36 100.0 30 AGCGGCAGTT .................................... AAATTCCAGTCATATAATTGCTATGCTCGT 1131647 36 100.0 30 CTATGCTCGT .................................... GATGTAATCATGCGTGATACACGTTCATCT 1131713 36 100.0 30 ACGTTCATCT .................................... GATGTAATCATGCGTGATACACGTTCATCT 1131779 36 100.0 30 ACGTTCATCT .................................... AGATAGGTAAAACCCGCTGCCAAAAAGACT 1131845 36 100.0 30 CAAAAAGACT .................................... ATAGTTTTACGTGTTTTTAAGTTTTGAGTT 1131911 36 100.0 30 GTTTTGAGTT .................................... TCAATACAAGCATCTGCGGACGATTGCCTA 1131977 36 100.0 163 CGATTGCCTA .................................... ACGAGAACGGGGATAAGCACGAGATTCCTCGTTTTGGGACCATTCAAAACAACATAGCTCTAAAACACCTCTGCTGTATCAATAGCATCACGACTTGTTTTGGGACCATTCAAAACAACATAGCTCTAAAACAAAAGTTTATCCAAAAATTCTTGTGAAATTT 1132176 36 100.0 TGTGAAATTT .................................... CTCGTAGACT ========== ====== ====== ====== ========== ==================================== 18 36 37 GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.89%AT] # Reference repeat match suggestion: R [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 97% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [0.00,-2.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [71.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [79,104] Score: 0/0.18 # # Final direction: R [0.27,0.87 Confidence: MEDIUM] >NC_018870 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2456009 30 100.0 37 CCTAGTAATC .............................. CAGAAACTGGGTGAAATTGTGTTGGCGGACATATACA 2456076 30 100.0 36 GACATATACA .............................. CCAGAGATGCACTTTCACTTTTGAGGTGTCCAAAGG 2456142 30 100.0 36 TGTCCAAAGG .............................. GAGATACTTTGACGTTGTGGATATGTTGGAATGGCC 2456208 30 100.0 36 TGGAATGGCC .............................. CATGCTTAGGATGCAGAGAGGGGATAAAAATGACAT 2456274 30 100.0 35 AAAATGACAT .............................. GGGGTAATTCTTCCTTTCTCTGCCAAGTCGATTAA 2456339 30 100.0 37 AGTCGATTAA .............................. GCACGCTTTACGGCACGCCCACCCTGACCGCGCCCCA 2456406 30 100.0 35 CCGCGCCCCA .............................. ACAAGCACACATTCTTTGCTGTTCTTGAAGAGATG 2456471 30 100.0 36 TGAAGAGATG .............................. GCCGACTAAGGCTGCGGCTGCGGCTGCGGCTCCTGC 2456537 30 100.0 37 CGGCTCCTGC .............................. TGTGGAGTAAGGGGGGATATTGTGATAGCACTTTTTA 2456604 30 100.0 38 GCACTTTTTA .............................. AGAGCAAGGGCTTCTATCTCTTCCGTACGGGTTTCCTT 2456672 30 100.0 34 GGGTTTCCTT .............................. GCGGGACTTCTATCCAGTCGATTCCCTGCTCGGT 2456736 30 100.0 35 CCTGCTCGGT .............................. CCTCTTTCCTGTCTCCCAGTTATCTGGGAAACAGG 2456801 30 100.0 36 GGGAAACAGG .............................. ACAGATAAGGAGTTAAGAGACTTAATTGCCGAAGTT 2456867 30 100.0 37 TGCCGAAGTT .............................. CGGAATCTGCTGAACCTAATTTGATGGAGTTGTACGG 2456934 30 100.0 36 AGTTGTACGG .............................. AAAAGAAATTCAAGCTCTACCATTGCGACGCACCTC 2457000 30 100.0 37 GACGCACCTC .............................. GGAAGGAGAACTCGAGAAGGGACTTGCTCTTCTCGGG 2457067 30 100.0 36 TCTTCTCGGG .............................. TATTACATGGGAATTAGAAGAACGGGAAGGTTCTTA 2457133 30 100.0 38 AAGGTTCTTA .............................. GAAGTACAGGGTGATTGCGGAATTTGTCGATTTGGAAG 2457201 30 100.0 36 GATTTGGAAG .............................. CATCTATTATAAGTAAACAATATCCTTCTTTTCCTA 2457267 30 100.0 36 TCTTTTCCTA .............................. TTAGCGTGATCGAGGGCATGATGAAGCTCCTCGAAG 2457333 30 100.0 37 CTCCTCGAAG .............................. AGAGAGGAAAGTGGCATATTCTCGTCCTATCGCGCCA 2457400 30 100.0 35 TATCGCGCCA .............................. CAAGAATAGAAAGTCCCTTCTCGAGATCCCCTTCC 2457465 30 100.0 35 ATCCCCTTCC .............................. TTCTGTTTTGCATTTTTTGGCACACTTTTGTTGAA 2457530 30 100.0 36 TTTTGTTGAA .............................. TCCATCAGGCGTGATGAGCGCAATGACGGTGCTTGC 2457596 30 100.0 37 CGGTGCTTGC .............................. GGTATTATCATATTACCTGCCCCGCGGTCGGCGCTCT 2457663 30 100.0 TCGGCGCTCT .............................. TCTGTTCAAG ========== ====== ====== ====== ========== ============================== 26 30 36 GTTTCAATTCCTCATAGGTACGCTGAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [607,572] Score: 0/0.18 # # Final direction: R [0,5.37 Confidence: HIGH] >NC_018870 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2457729 30 100.0 36 TCGCTAAAAC .............................. GAAGAAGTTTCCACTAAAGTTAGGAAAAAAGTCCTA 2457795 30 100.0 36 AAAAGTCCTA .............................. GGTAGAGGTGAAGAAGCACCCGGCGAGCAGAGCCCA 2457861 30 100.0 36 GCAGAGCCCA .............................. CGGCATCGGAATTTTAACTGGATACGAGGGGGTTGA 2457927 30 100.0 37 AGGGGGTTGA .............................. AAGAGAAAAATCGGGATGATTATGGGGCTTGTATATT 2457994 30 100.0 37 CTTGTATATT .............................. AGAAAGATGGTGAATTCATACTCAATACCGTCCCGGA 2458061 30 100.0 CCGTCCCGGA .............................. GCATGGACTGTGAGCGGATGTACGTGCTCTGGGAGTA ========== ====== ====== ====== ========== ============================== 6 30 36 GTTTCAATTCCTCATAGGTACGCTGAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [58.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2327,174] Score: 0.18/0.18 # # Final direction: R [0.45,5.37 Confidence: HIGH] >NC_018870 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2460106 30 100.0 37 GGATTACGCT .............................. GATGCCCTCCTTTCTTGCGATTGAACGGCAAGAAGTG 2460173 30 100.0 35 GCAAGAAGTG .............................. GGGGGTGTTTCCAGCCGTAATTGATAATCCAAAGT 2460238 30 100.0 35 AATCCAAAGT .............................. AATCAAAGCATGTCGCCCGAGGCTCATTGACGAGG 2460303 30 100.0 36 ATTGACGAGG .............................. TTTCTGGGCACTTTCGGATGTCCAGAAGTACCCGAA 2460369 30 100.0 36 AGTACCCGAA .............................. TGCATCTGAAGCACTTAAATACGCGAAGAAGCTCAA 2460435 30 100.0 38 AGAAGCTCAA .............................. GTAATTACTCCCCTTACCCAGATAGCACCCAAGCATCG 2460503 30 100.0 37 CCAAGCATCG .............................. GTGCACTGATGGTCGTTTCTGCCTGGCCTGTTTTCAC 2460570 30 100.0 36 CTGTTTTCAC .............................. ACGCAAAAAACGTTTGTCCTCTTACTGATGTAGAAT 2460636 30 100.0 35 GATGTAGAAT .............................. TCTCCGAATGCCCGGCTAAAAAGCGGAAGGCTTCT 2460701 30 100.0 35 GAAGGCTTCT .............................. CGAAGCATGGTAAACATGATAACGACCATCATAGA 2460766 30 100.0 39 CCATCATAGA .............................. TTTCGTTCCCCCCTTTGTTTGTTTCCTGTTTCCATTGTA 2460835 30 100.0 35 TTCCATTGTA .............................. CTCCTCTCTCACTTCTTTCGTCTTGGTGTCAAATC 2460900 30 100.0 36 GTGTCAAATC .............................. TGCGGGAGCGCCTGGACTACTACGAGGACTACTCAG 2460966 30 100.0 37 GACTACTCAG .............................. GGTTCGGCGGGGCGTGGGATGCATACGGGGACGAGGA 2461033 30 100.0 36 GGGACGAGGA .............................. CTTGAAGAAGCCTTTTACGTGGTAGTTCATAAGATG 2461099 30 100.0 36 TCATAAGATG .............................. AGGGGTATTATGTTGCAGTTCCGGAATTGCACCCGT 2461165 30 100.0 37 TTGCACCCGT .............................. GCAACCGAACGCCTTACCAGTTGTTGGAGATTGATGA 2461232 30 100.0 36 AGATTGATGA .............................. CAAAGAAGAACTGACCAAGATGGTGGCTGATGCGGT 2461298 30 100.0 37 CTGATGCGGT .............................. GAAGAAACGCGAGCGGACGATTTGGCCTATAAAGAAA 2461365 30 100.0 38 TATAAAGAAA .............................. TCAAAAGGTTGCGGGCCGAGCGGGAGGCCGCGGCCGAA 2461433 30 100.0 35 CGCGGCCGAA .............................. TGAAAGAGCGGGTAGCAAAAGAATATATGGAATCA 2461498 30 100.0 36 TATGGAATCA .............................. CGGGTCTGGAAATTCCATCCTCAAGAGTTCGGATTG 2461564 30 100.0 37 GTTCGGATTG .............................. GGCAGTATAAAGAAAAGCGTTTGCCTGTCTATTGTGG 2461631 30 100.0 37 TCTATTGTGG .............................. TAAGAACGCGATAGGTTGAAAGCGGAGTTACAAACAT 2461698 30 100.0 40 TTACAAACAT .............................. GGAACGGATTGTGCTTTCTACAATCTGTTTGATATCCCGG 2461768 30 100.0 36 GATATCCCGG .............................. GACCGGGATTCTGGTTGCTTACGGCGTTGGATCCGC 2461834 30 100.0 37 TTGGATCCGC .............................. TATCGAGAGATGTACCTGCGGCGGCATCCCTTATGCG 2461901 30 100.0 38 CCCTTATGCG .............................. CCAATGTTGGGCACCGAAATGGTAAGCTCTGTGCCATG 2461969 30 100.0 38 CTGTGCCATG .............................. GATACGTTACCGTCCCCTTCGTCCTTCTTGGCACTTTC 2462037 30 100.0 38 TGGCACTTTC .............................. CAGGCCTGGTTAATTTATGCTGAACACTTCGGTGGTCG 2462105 30 100.0 36 TCGGTGGTCG .............................. TCCTGTAGCCTTTACTGCGGGTCTTCGTTCAATGCC 2462171 30 100.0 39 GTTCAATGCC .............................. GCATTCCGCCCCAGCCGCCGGCGATCTGGGTACTGGTTT 2462240 30 100.0 37 GTACTGGTTT .............................. CTGACCACGATGAACGGTTTCTCCGCATCCGGCCTTA 2462307 30 100.0 36 TCCGGCCTTA .............................. ATTTTCCACTCTTCATCGAACTCTTTCTCGTGGATG 2462373 30 100.0 35 CTCGTGGATG .............................. GGGCAAGTTCTGCGGCAACGGGAGCAAGGGCATCG 2462438 30 100.0 37 AAGGGCATCG .............................. GCAGCTTTAGCACCTTCAATTGTTGTAGCAACTTCTG 2462505 30 100.0 36 GCAACTTCTG .............................. GTGGATAAAGTCCTTCTCCGGGGCGAGAAGGAAGAA 2462571 30 100.0 37 GAAGGAAGAA .............................. AAAAATTCCTCTTTTTCCTGGATCGTCGGGTTCATTT 2462638 30 100.0 40 GGGTTCATTT .............................. AAACGTGTTGATTCGGCAAGATATTCAAGTTCTTTATTTT 2462708 30 100.0 36 TCTTTATTTT .............................. CGGCGATGTAAACGACGACTACGGTTACAGTTATGT 2462774 30 100.0 37 ACAGTTATGT .............................. CACGGGATATTCCGGCAACCCTGGCTGGAATACCGAT 2462841 30 100.0 38 GAATACCGAT .............................. GCTGCCGTAAGCCAGGTTGTGTTCGGCCCGGATCTGTT 2462909 30 100.0 37 CGGATCTGTT .............................. ACTGCTCTTCCCAAAGGCTTAGCCCCCAGGTAGCAGT 2462976 30 100.0 35 AGGTAGCAGT .............................. TGCGAGCCCCTCAGTCCAGAGCCCATGCCTCCGGA 2463041 30 100.0 37 TGCCTCCGGA .............................. CGAGCCGGCAGACGAACGGACACTGCGATATATGAAG 2463108 30 100.0 36 ATATATGAAG .............................. ATCACACAGATTACCGAGTTTTTGCCTGAGTTCTTG 2463174 30 100.0 36 TGAGTTCTTG .............................. GGCTCACCTTGAGATTTCTGCCGCCCCTGAGTCCTA 2463240 30 100.0 36 CTGAGTCCTA .............................. AAAAACTATATGATGCACTATGCCGGGGCACTTCAA 2463306 30 100.0 36 GGCACTTCAA .............................. TGAAACCTGGCGTCAGGTTGTCATCGGCCCAAAGGG 2463372 30 100.0 GCCCAAAGGG .............................. CGGACCGCTT ========== ====== ====== ====== ========== ============================== 50 30 36 GTTTCAATTCCTCATAGGTACGCTGAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [144,342] Score: 0.18/0.18 # # Final direction: R [0,5.55 Confidence: HIGH] >NC_018870 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2463808 30 100.0 36 AGGCAGTATC .............................. CCTGCAACCTAACACAGTCACAGACTGCCCAAGCAT 2463874 30 100.0 39 GCCCAAGCAT .............................. TCTAGAGGGAGGTGTGTATTATTATACTTTTACGACATA 2463943 30 100.0 36 TTACGACATA .............................. GGCAAATGTGTTGAATTGGTTGATAGAGCAGTTTGC 2464009 30 100.0 38 AGCAGTTTGC .............................. TTGAAGTGAAAACCCCAGGCGGTAAACTGTCAAAATAT 2464077 30 100.0 36 GTCAAAATAT .............................. GTTCAAGCTCATCACCACACAATTGCCGTATATCTT 2464143 30 100.0 36 CGTATATCTT .............................. TTTTCATTATCGAAAAAGCAGAGAGCGTTGAAGAGA 2464209 30 100.0 36 GTTGAAGAGA .............................. TTCTCCATTCCTATTCCAGCCTTTCCATGTACTTAC 2464275 30 100.0 37 ATGTACTTAC .............................. AACGAAGCCGCAAACTGCATCCGCATCCCCTACTCGC 2464342 30 100.0 35 CCCTACTCGC .............................. TGGAAAATTACGGAAGGAGGAACAAAGTATGTTCA 2464407 30 100.0 37 AGTATGTTCA .............................. GAGGGAGAATGCCGCATGGTCGGGTCGAGTTCCGCGG 2464474 30 100.0 AGTTCCGCGG .............................. CCGTCACGAT ========== ====== ====== ====== ========== ============================== 11 30 36 GTTTCAATTCCTCATAGGTACGCTGAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [340,355] Score: 0/0.18 # # Final direction: R [0,5.37 Confidence: HIGH] >NC_018936 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1238426 32 100.0 33 NNNNNNNNNN C............................... GAGTTTACTCGCTCAAATCAAGGTATGCGGACA 1238491 32 100.0 34 NNNNNNNNNN ................................ GCTGTGACATTGCGGGATGTAATCAAAGTAAAAA 1238557 32 100.0 33 NNNNNNNNNN ................................ TAAAGCAAACCTAGCAGAAGCAGAAAATGACTT 1238622 32 100.0 35 NNNNNNNNNN ................................ CTGATGTAATTGGTGATTTTCGTGATATGCTTTTT 1238689 32 100.0 1 NNNNNNNNNN .....G.......................... NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 5 32 33 ATTTCAATCCACTCACCCATGAAGGGTGAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.12%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [61.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [161,150] Score: 0/0.18 # # Final direction: R [0.27,4.87 Confidence: HIGH] >NC_019042 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1581345 32 100.0 33 GACAGAGTTA ................................ TGACAGTGATATTCAAGTTGATGCAATTGCGAT 1581410 32 100.0 34 CAATTGCGAT ................................ TAACCAAAATTACTTAAATTTTGATAAGAATAGC 1581476 32 100.0 34 TAAGAATAGC ................................ AGTAAATGTAACTGGTTGTGTACCTGTTAGGGTA 1581542 32 100.0 34 TGTTAGGGTA ................................ AGTTCCGTCATGGCATCAAATCCCCTAGATTATC 1581608 32 100.0 34 CTAGATTATC ................................ CATATAAAGAGTTGGGGTCTGTACTCGTCCAAGT 1581674 32 100.0 33 TCGTCCAAGT ................................ TCATTGGAAGCACGAACCTTGCCTTTATGGATG 1581739 32 100.0 34 TTTATGGATG ................................ TGTTCTAACACCTAATAAAAAGTTTGCTATAAAA 1581805 32 100.0 34 TGCTATAAAA ................................ AGCAAAAAACAATGCCAAAAAGATGAATGAGATT 1581871 32 100.0 34 GAATGAGATT ................................ TCTTATAAAGGAGTTTAAAGAATCTAGTGACAAA 1581937 32 100.0 33 TAGTGACAAA ................................ TAAAAGAAAATATCGACACTTCTTCAGCAATGG 1582002 32 100.0 34 TCAGCAATGG ................................ TAATCTAAGAGCAATATCTGACCAAATAGTAGAA 1582068 32 100.0 34 AATAGTAGAA ................................ CGATTTAGACTAGCGGTGTCTGAGTCGCAAGGCT 1582134 32 100.0 35 TCGCAAGGCT ................................ TCTAGTTCTAAGTCCTGTTCTGCCCTCAAAGTATT 1582201 32 100.0 TCAAAGTATT ................................ AGCGCCAAAT ========== ====== ====== ====== ========== ================================ 14 32 33 ATTTCAATCCACTCACCCGCGAAGGGTGAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [9,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.50,-4.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [194,150] Score: 0/0.18 # # Final direction: R [0.74,4.5 Confidence: HIGH] >NC_019386 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1319915 37 100.0 37 AGGGGGTAGA ..................................... TTACGGATTTCCTTTACAACGTATGACTTGTCCTCCT 1319989 37 100.0 38 TTGTCCTCCT ..................................... ACGATTACCTCTTGGCCGATGGCCACTTGCTTGGCTGT 1320064 37 91.9 GCTTGGCTGT .....................CA.............G GAGGCACCC ========== ====== ====== ====== ========== ===================================== 3 37 37 GTTGCACGAGATGCTTCCCCGTCAGGGGATTGCGACC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-9.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA # # Final direction: F [1.05,0.37 Confidence: MEDIUM] >NC_019386 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 676752 36 100.0 40 ACATTGAGGC .................................... CGCTGAATGCGGCTCTTGAACTACCCGCGGAGGAAAAGGC 676828 36 100.0 41 AGGAAAAGGC .................................... GCCGGGGGAAACCCTCCTCCGGCTCGCCGAGGGGTGGGGAG 676905 36 100.0 43 GGGTGGGGAG .................................... AGGGGGCCGCCTTCCGGTGGGTGCTTGTGGAGGTGGTGGAGTG 676984 36 100.0 39 TGGTGGAGTG .................................... GGGACTGGGACTACGTCCTCAAGGGGCACGCGGAATGGG 677059 36 100.0 40 GCGGAATGGG .................................... CCCGGAAGCGCGCCCCATTGGACGCGCGCGTCGTTGAAAG 677135 36 100.0 42 TCGTTGAAAG .................................... AAGGGGGAAGCCATGAAGAAGCTTCTGGTTATTCGCTTGGGT 677213 36 100.0 44 TCGCTTGGGT .................................... CCCATCACCCGCGCGGTGTCCTCATGGCCCACCGCGCTGGTAAA 677293 36 100.0 46 CGCTGGTAAA .................................... AGAATGGCTTACGCCTTGGGCGGATCGTGGCCCCGAACTCGTGGAG 677375 36 100.0 43 ACTCGTGGAG .................................... CCTCCTGGAGCGCGCGGCCATGTCCCTCCGTGGCCGGTTCTCT 677454 36 100.0 40 CCGGTTCTCT .................................... TCACGACGAAGCTCCCGTTTTCTCTGTCCTACACGGACGA 677530 36 100.0 44 ACACGGACGA .................................... AGCGTTGACCTCGCCAAACTCATCATTCTCCTGGCCAGCATGTG 677610 36 100.0 42 CCAGCATGTG .................................... CTGAGCCTGACCAGGGGGGAGTACCCCCATGTAACGAGCACG 677688 36 100.0 41 AACGAGCACG .................................... CCTGGCGCTGGGTGCGAAGTTCCCCGAGGTCTCCGGGACGC 677765 36 100.0 TCCGGGACGC .................................... TCTACCCCCT ========== ====== ====== ====== ========== ==================================== 14 36 41 GTCGCAATCCCCTGACGGGGAAGCATCTCGTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.60,-9.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [35.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA # # Final direction: R [0.37,0.64 Confidence: LOW] >NC_019386 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 878387 29 100.0 32 NNNNNNNNNN ............................. GATTCCCGGGACGTCGGCTACCTCTGCCTTGT 878448 29 100.0 32 NNNNNNNNNN ............................. TTGGGACCATCGCACGGATAGGCCCCATATCC 878509 29 100.0 32 NNNNNNNNNN ............................. TCAATGACCTAATCCTGAAGAAGATGCGAGAG 878570 29 100.0 32 NNNNNNNNNN ............................. CGCTCGCCTCGGGAAAGGAAAACCCAGGTCCG 878631 29 100.0 32 NNNNNNNNNN ............................. GTGAGCTTTTTCCGCGTCGCCAAGGAACACGG 878692 29 100.0 32 NNNNNNNNNN ............................. GTTCCTTGGGCTGCCCGTCCACAAGCTCTTTC 878753 29 100.0 32 NNNNNNNNNN ............................. TGTTCCAGCGGCTCCTCAACCGCACCGAGCGG 878814 29 100.0 32 NNNNNNNNNN ............................. GGCCCGCGGCTAGCCGGCACTCTGGCAGTTCC 878875 29 100.0 33 NNNNNNNNNN ............................. GTCCGGGTCGTGGTGGACGCCCCCCAAATCCTC 878937 29 100.0 32 NNNNNNNNNN ............................. TGAGCGTCCCCCTGGAGGTCGTCAGGGCCCAG 878998 29 100.0 32 NNNNNNNNNN ............................. CCCGAGGCCTACCGCGCCCTGCGGCGGAAGGC 879059 29 100.0 32 NNNNNNNNNN ............................. ATCACCAGGGCCCCCGGGTTCCAGACGTCCAG 879120 29 100.0 32 NNNNNNNNNN ............................. ATCCCGGGCCAGTAGTCCGGTGGGAGGAGTCT 879181 29 100.0 32 NNNNNNNNNN ............................. GTCCGTGAGCTGCGCCGGGAGGTCCCGGAGGG 879242 29 100.0 32 NNNNNNNNNN ............................. TCCGTGGAGCCGCACCGGGGGCAGGGTAGAGT 879303 29 100.0 32 NNNNNNNNNN ............................. GGCCACCGCCGGGGAGGTGGCGGCCCTTCCCG 879364 29 100.0 31 NNNNNNNNNN ............................. TGAGCACCTGGTGAAGGTCCACCCACTGGGC 879424 29 100.0 32 NNNNNNNNNN ............................. CTGGCCGTCATCCGGCTCCTTCTGGACCACGG 879485 29 100.0 31 NNNNNNNNNN ............................. GGGGCACCCCGTTGGCCTGGCCGATGGGCAT 879545 29 100.0 31 NNNNNNNNNN ............................. GCCCCCATGATGTGGTCGCCGGGGACCGCCA 879605 29 100.0 32 NNNNNNNNNN ............................. GCCGTCTTCCCCGTGACGATGGCGATCTGCTC 879666 29 100.0 32 NNNNNNNNNN ............................. GGGGCCACGCTCTGGGTGGTGCGCACCTGCAC 879727 29 100.0 32 NNNNNNNNNN ............................. TTCTCCTCCAAGTGGGCGTAGTCCACGGGCAC 879788 29 100.0 32 NNNNNNNNNN ............................. AGGTACCGCGTTCCACAAGCCAGGCCTCTAGG 879849 29 100.0 32 NNNNNNNNNN ............................. ACAACTTCTTCCAGGTCCTCCGGGACGAGGCC 879910 29 100.0 32 NNNNNNNNNN ............................. CTCATCCGCCTGGACCCCCATAGCTACGTGGC 879971 29 100.0 32 NNNNNNNNNN ............................. AAGGTCCTCACCTATTGCGTGGACCCCGAGGC 880032 29 100.0 32 NNNNNNNNNN ............................. CCAGCGAGCGCCAGGTAGCCGAGCGCGCTGGC 880093 29 100.0 32 NNNNNNNNNN ............................. AACCTGCCTAACCCGGCGGCCCGCACCGTCAG 880154 29 100.0 31 NNNNNNNNNN ............................. GCTACGGCCCACAGGGGGGTCAAAAGTAAGA 880214 29 100.0 32 NNNNNNNNNN ............................. CCATCTACTCTTCCACCGGGCTCTACGCCGAG 880275 29 100.0 32 NNNNNNNNNN ............................. TCCGCTACCGCCCTCCTGCCGGCTACGCTGAA 880336 29 100.0 32 NNNNNNNNNN ............................. GGGCTTGACGGCGTGGGGTGGAACCCGGAAGG 880397 29 100.0 32 NNNNNNNNNN ............................. GGGCTTGACGGCGTGGGGTGGAACCCGGAAGG 880458 29 100.0 32 NNNNNNNNNN ............................. CTGCCCGTGTACTCCTGGTAGTCGGGCCCGCC 880519 29 100.0 32 NNNNNNNNNN ............................. GGAGCAACGGCTTGCAGGAGGCGTGGGCCATC 880580 29 100.0 32 NNNNNNNNNN ............................. TCCGCCAGATGGGCCTGGAGAAGCCCAGGAAG 880641 29 100.0 32 NNNNNNNNNN ............................. GATGAGGAGCCAGTTGGGACCCTGGGCCTTCT 880702 29 100.0 32 NNNNNNNNNN ............................. TGGACCCCCGAGGAGTTTTCTGAGGCCACGGG 880763 29 100.0 32 NNNNNNNNNN ............................. GGGGTAGCCTCCTCCTTAGCCTCCCCCTTGGC 880824 29 100.0 32 NNNNNNNNNN ............................. TGGGGCGCGCCGTCTTTGAGGAGGACGGTACG 880885 29 100.0 32 NNNNNNNNNN ............................. GAAGGGGAACAGCACAACCTCATCCTGGACCG 880946 29 100.0 32 NNNNNNNNNN ............................. GGGGGTGTTCTGCTGATGGAGTGGAAGGACGT 881007 29 100.0 32 NNNNNNNNNN ............................. GCGCCCCCTTTTCCAAAGCCGCTCCCCCCAAG 881068 29 100.0 32 NNNNNNNNNN ............................. TGGAGAAGGCCCTGGAAAGGGTTGAGGCTCGG 881129 29 100.0 32 NNNNNNNNNN ............................. CTGAGGGCGGCCTTCCTGCTGTTGTTTGAACC 881190 29 100.0 32 NNNNNNNNNN ............................. GCTTTAGCTCGGCGATTCCACTCATGCCGCAC 881251 29 100.0 32 NNNNNNNNNN ............................. CTCCTGGGCCTGCCTGAGGATGCCCTGTAGGG 881312 29 100.0 31 NNNNNNNNNN ............................. GATTATCGTGCCCAGAATCGTGGTCAGGCCC 881372 29 100.0 32 NNNNNNNNNN ............................. GGATTAGCGCCTTCCAGTCCATGCGCACCCCC 881433 29 100.0 32 NNNNNNNNNN ............................. CCTTGTATTGCCCGGTTTCCAGCGTGCACGAG 881494 29 100.0 31 NNNNNNNNNN ............................. CCCGGAGGCGGCGGAGTTCCTCGGGGGTGGC 881554 29 100.0 32 NNNNNNNNNN ............................. ATCACCAGGGCCCCCGGGTTCCAGACGTCCAG 881615 29 100.0 32 NNNNNNNNNN ............................. ATCTGGGTGTACTTGCTCCTCATTGGCGCCTC 881676 29 100.0 32 NNNNNNNNNN ............................. ATGGCCTCCTCCAGGGCCGGGCGCACGAATGG 881737 29 100.0 32 NNNNNNNNNN ............................. CGGAGACCGGAGCTGGTGCTGCGGGGGGAGGG 881798 29 100.0 32 NNNNNNNNNN ............................. TACGGGTGGTGGAGGCCGCCATAAACGCCCTC 881859 29 100.0 32 NNNNNNNNNN A............................ CGCTTCCCGGGCTCACGCAGAGCTTCCTCCAC 881920 29 100.0 32 NNNNNNNNNN ............................. ACGGCCTGGCGGGCGGCCTCCGTGAGTTCGTC 881981 29 100.0 31 NNNNNNNNNN ............................. TCACTGACCTGAACGACGCCATAGACGCCCT 882041 29 100.0 32 NNNNNNNNNN ............................. TTCACCCCAAACAGGCCAGACCCTGCGATGTA 882102 29 100.0 32 NNNNNNNNNN ............................. TGGACGGTGGCCTCCTCCGAGGTCATGGTGAG 882163 29 100.0 32 NNNNNNNNNN ............................. AGCGTTCCCAGTCTATGGTGTCCTTCTCCCCA 882224 29 100.0 32 NNNNNNNNNN ............................. ATCGGGAGCTCGTGGGACTCCCCCCCGCCCGA 882285 29 100.0 31 NNNNNNNNNN ............................. TGTCCTTTAGCTTCTGGAGGTCGGTCTTCAC 882345 29 100.0 32 NNNNNNNNNN ............................. GGGGGTGAAACCCGCCCGCGCGTACACCACAG 882406 29 100.0 32 NNNNNNNNNN ............................. GGAGGAAACCAAGATGACGCGAATCCTGGCAA 882467 29 100.0 31 NNNNNNNNNN ............................. CGGTTTCCCACTGGTCCTCCGGCGTCAGGTT 882527 29 100.0 32 NNNNNNNNNN ............................. GCCGCCTTCACGGCCACGAGGAAGGTCATCCA 882588 29 100.0 31 NNNNNNNNNN ............................. GCGTCAGGGACGGCATCTAGGCGACGCCCCT 882648 29 100.0 32 NNNNNNNNNN ............................. GGGCTATCCCCTGGCTCGTCCATGCCCCACAC 882709 29 100.0 32 NNNNNNNNNN T............................ TGTACGAGGCGGTGCTGGAGGCCCAGCGGGCT 882770 29 100.0 32 NNNNNNNNNN ............................. GGGCGGATAGTGGCCCAAGGTTGTCCTCATCG 882831 29 100.0 31 NNNNNNNNNN ............................. GGGGGATGCGATTGCGGGAGCGCAAGGCGGT 882891 29 100.0 32 NNNNNNNNNN ............................. TGAGGCACTTCGTCAAACCGCGTGGGTTTGGG 882952 29 100.0 32 NNNNNNNNNN ............................. GAGCGCACGGTGCAGAGGGCCTTCGCCTCGTC 883013 29 100.0 32 NNNNNNNNNN ............................. AAGCCCCCCGAGCCCCCCAGGGCCCTCCAGGG 883074 29 100.0 32 NNNNNNNNNN ............................. GGGCGGCCACGGCCATGACCCCGCGGGAGGCC 883135 29 100.0 32 NNNNNNNNNN ............................. GTCGTCCCAGACCCCCCCATCGTCCCAGGCAT 883196 29 100.0 32 NNNNNNNNNN ............................. ACCCCAGCCCGCACCAGAGCGTCCTGGACGGC 883257 29 100.0 32 NNNNNNNNNN ............................. GGTAGTGGCCCCGTCCACATCGGCGTAGATCA 883318 29 100.0 32 NNNNNNNNNN ............................. GCCGGGAGGAGTTACTGAGCGCGGCGGGGCGG 883379 29 100.0 31 NNNNNNNNNN ............................. GCCCTACGGATGCGGTCCGCCTGGGTCCGCA 883439 29 100.0 32 NNNNNNNNNN ............................. TGACCCCGGGGGTGGTCATCCAGCACCCGGAC 883500 29 100.0 32 NNNNNNNNNN ............................. AGGGTCTTCAAGACAAACATGACGGCCCAGGG 883561 29 100.0 32 NNNNNNNNNN ............................. TAGGCTCCAGCGGCGTTTAGGGCCGCCTGGAG 883622 29 100.0 32 NNNNNNNNNN ............................. GGCAGGCACCGGGACCTCACGGTCCTCGTGGT 883683 29 100.0 33 NNNNNNNNNN ............................. GTACGGCTACAATAGCAATGGCCACTATATTCG 883745 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 89 29 31 CGGTCCATCCCCACGGGCGTGGGGACTAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [4,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA # # Final direction: F [0.41,0.27 Confidence: LOW] >NC_019386 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 780567 35 100.0 41 ATGGCCGGTA ................................... GGGACCCCTTGGACCCCCGCCTGATTGACAGCCTAGCAGGG 780643 35 100.0 41 CCTAGCAGGG ................................... CCCACAGTCCAGGGGCCAGCCCCCCGCGGCAAGGCACCTAG 780719 35 100.0 41 AGGCACCTAG ................................... GCATCGTGGAGGAGGAGAACACTATGGGGTGGGTGGAGGCG 780795 35 100.0 38 GGTGGAGGCG ................................... TTGTGGGGCAATACTCCGGCCCCCGCCTGCCAGAGGGG 780868 35 97.1 43 GCCAGAGGGG ............G...................... GGAGGAGGAGGCCCGGGCCTTCTTGGAGGAGAGGTTTATCCTG 780946 35 100.0 43 GTTTATCCTG ................................... AAGATGCCTACCGCGCCTGGGTTGGAGGCGGGTGGGATATGGG 781024 35 100.0 GGGATATGGG ................................... TCTACCCCCT ========== ====== ====== ====== ========== =================================== 7 35 41 TCGCAATCCCCTTACGGGGAAGCATCTCGTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.60,-9.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [46.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA # # Final direction: F [1.05,0.37 Confidence: MEDIUM] >NC_019386 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 893456 29 100.0 32 CTGGTCAAGT ............................. GGAATGGAGCCCGGACCCCGCGGGCTACCCGC 893517 29 100.0 32 GGCTACCCGC ............................. AGGAGGTGGCGGAGATCGTGGGGCGGGTGGTT 893578 29 100.0 32 GCGGGTGGTT ............................. AGCTGCACGCCGCCATCCGGGGCCTGGACGAG 893639 29 100.0 32 CCTGGACGAG ............................. GGATCGCCGCCTGGTTGCGGGCCCAGGGGTAC 893700 29 100.0 32 CCAGGGGTAC ............................. ACATGCCCATGAAAACGCGGAGTGATTTAGTC 893761 29 100.0 32 TGATTTAGTC ............................. TGCGGTGAGCCCAGGTGGGCGGAGGTGTACCC 893822 29 100.0 32 AGGTGTACCC ............................. CGGAAGACGCCCTTCGTGGTCTCCACCTCACC 893883 29 100.0 32 CCACCTCACC ............................. TACCTCCACGAGGGCTTTGCTTCCTGGACGCA 893944 29 100.0 32 CCTGGACGCA ............................. CGCTCCCCCACCTTGGGGTCAGCGCCAGCCAT 894005 29 100.0 32 CGCCAGCCAT ............................. TGGACGGGGACCACGCCGTTCTCCAGGAGGTC 894066 29 100.0 32 CCAGGAGGTC ............................. TACGGCACCTTGACCTTATCCCCGCCCCTGAC 894127 29 100.0 32 CGCCCCTGAC ............................. GGAGAGCGATGGCCCGCCACACCCCCATCTCC 894188 29 100.0 31 CCCCATCTCC ............................. TCCCCGGGGGCATGGCGCAGGACACCCCGGC 894248 29 100.0 32 ACACCCCGGC ............................. GAGGCGTGGGCGGTTCTGCGGGCTCAGAAGAA 894309 29 100.0 32 CTCAGAAGAA ............................. CGGGGGGTCATCGCCGCCGCCGCGGTCCTCCA 894370 29 100.0 32 CGGTCCTCCA ............................. CCCCCGGTGGTCCGCCTCATCACCCAGTAGGT 894431 29 100.0 32 CCCAGTAGGT ............................. AGGCCTCCCACGGCCTGGCCAAGAAAACCCAG 894492 29 100.0 32 GAAAACCCAG ............................. GGCTTCCTGGAGGCGGCCCCCCGCCTGCTGGG 894553 29 100.0 31 GCCTGCTGGG ............................. GACCCCTCCCTGGTCTCCGGGGTGGAGTCCC 894613 29 100.0 32 GTGGAGTCCC ............................. GGGAGGGTTCCCTAACCGCGTCCGCTATCCGC 894674 29 100.0 32 CGCTATCCGC ............................. TTCGCCTCCCGGTACCTGGGTCACCTCCCGCT 894735 29 100.0 31 ACCTCCCGCT ............................. GGGGCCCTCGCTGGGTCCCCAAAGGTCTTGG 894795 29 100.0 32 AAGGTCTTGG ............................. CTCGCCGCCCTCCAGAGGGAGCTTCCCATCGG 894856 29 100.0 32 TTCCCATCGG ............................. CGAGAGGAGGTGAGCCTGAAGCTCTTCGTGCG 894917 29 100.0 32 TCTTCGTGCG ............................. CTAGGACCAGGAGGAGGCCCACCCAGATCAGC 894978 29 100.0 32 CCAGATCAGC ............................. CTTATGCACCCTCTCAGGGGGAATGCCGGTCC 895039 29 100.0 32 ATGCCGGTCC ............................. TAACCTCCTGGAGGAGGCGCTCAGCCGCGGCC 895100 29 100.0 32 AGCCGCGGCC ............................. TGATAGGCTATGGCTATTATCCAACTAGACAC 895161 29 100.0 32 AACTAGACAC ............................. TGGGGGTGCCCCCTCCCCGGGACTACGACCCT 895222 29 100.0 CTACGACCCT ............................. GTGGCCTAATGAAACGGGTGCGCAACCGGCTC ========== ====== ====== ====== ========== ============================= 30 29 31 GTAGTCCCCACACGCGTGGGGATGGACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA # # Final direction: F [0.64,0 Confidence: HIGH] >NC_019387 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 58925 29 100.0 40 NNNNNNNNNN ............................. TGTGTACTCGCCATCAATGGGCCCCGTGAGCTTATCCAAG 58994 29 100.0 40 NNNNNNNNNN ............................. CTTTTAATCACCTCCGGCAGAGTCGGCTGTCTACGGGGGC 59063 29 100.0 39 NNNNNNNNNN ............................. CACGGAGGTGAGTGATGGTGAGGCGGCATTTCCTGGTTC 59131 29 100.0 39 NNNNNNNNNN ............................. CAAATCTCCCCCACGAGCCTCCTCATATACCTCAGGTCG 59199 29 100.0 37 NNNNNNNNNN ............................. CGTTAGCCGGGCGGCCTTCCTTGCGCCCCTTGCGCCA 59265 29 100.0 1 NNNNNNNNNN ................G.GA.CC.GAGCC NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 6 29 39 GTGTCCACCGTACCTTTAAGGGTTTGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.17%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [209,289] Score: 0/0.18 # # Final direction: F [1.05,0 Confidence: HIGH] >NC_019393 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 1641557 31 100.0 20 NNNNNNNNNN C.CTA......T.AAAG.............. ATGCACACACCTCAAGCGAA 1641608 31 100.0 20 NNNNNNNNNN ............................... ATGCCCACACGTCAAGCGAA 1641659 31 100.0 20 NNNNNNNNNN ............................... GCATACACGCGTCAAGCAAG 1641710 31 100.0 20 NNNNNNNNNN ............................... GTGTACACGTGACAAGCAAA 1641761 31 100.0 1 NNNNNNNNNN .............T................. NNNNNNNNNN ========== ====== ====== ====== ========== =============================== 5 31 20 TATAGAAGTACAGGTGTGGACAGACACTTAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.29%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [211,406] Score: 0/0.18 # # Final direction: R [0,0.68 Confidence: HIGH] >NC_019395 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3151396 29 100.0 32 GTCAACAAGT ............................. GGCTGACCTGGATGACCTCGCCGCACGTCCCA 3151457 29 100.0 32 GCACGTCCCA ............................. ATAGTTGGACATCAGTGGGTCTCCTTCGGATT 3151518 29 100.0 32 CCTTCGGATT ............................. CTCGACGAGCTGAAGGATGCGGCGGCGAGGGG 3151579 29 100.0 32 CGGCGAGGGG ............................. AACACAACCTCATATGCGCCACATGGACCTCG 3151640 29 100.0 32 ATGGACCTCG ............................. CCAGACAGGCCCCGATGGGGAGCAGCCGTGTG 3151701 29 100.0 32 CAGCCGTGTG ............................. CTAGCGTGACTCACACTGTGACTCACTGACGG 3151762 29 100.0 32 TCACTGACGG ............................. GGCGGCGCCACCAACCCAAACGAACTGGAGCT 3151823 29 100.0 32 AACTGGAGCT ............................. CGGCGCATCACTGCCCATGCCGAGCGCATCGG 3151884 29 100.0 32 AGCGCATCGG ............................. TCGAGTGGCGACACCTTCACCGGCGCGATGGC 3151945 29 100.0 32 GCGCGATGGC ............................. AGAGTTGAGCTCGGAAACACCGCGCTCAACAA 3152006 29 100.0 32 CGCTCAACAA ............................. AACTCGGGGCCGAACGTCCTCGCCAACAAGCT 3152067 29 100.0 32 CCAACAAGCT ............................. CTCGTCAGGGTCGCCATGGTGATGATGAACAT 3152128 29 100.0 32 TGATGAACAT ............................. ACCCTGTCGCTGGTCGCCGACACCGCCACCAT 3152189 29 100.0 32 CCGCCACCAT ............................. GTGGGCCGGCACTGGCGCATCGACCCGGCCGA 3152250 29 100.0 32 ACCCGGCCGA ............................. AGGCCATCGAGCAGCTGGCCGGCGAGGCCCAG 3152311 29 100.0 32 CGAGGCCCAG ............................. AAGTGGGGCGCCAAGTACATGGGCTGGTACAG 3152372 29 100.0 32 GCTGGTACAG ............................. TTCTTCGTCCCGGGAGAGCCGATCCCAGAGGG 3152433 29 96.6 32 TCCCAGAGGG ............................T GAGATGGTCGACATGAGGCGTTGGCTCGCAGG 3152494 29 100.0 32 GGCTCGCAGG ............................. GGCTGACCGTCATTCCCACCCTCCAGTGGTCC 3152555 29 96.6 32 CCAGTGGTCC ............................A TGGAACCGACACAAGGAGCTGACCAGCAAAAT 3152616 29 100.0 CCAGCAAAAT ............................. AAGAGACGCG ========== ====== ====== ====== ========== ============================= 21 29 32 GTCGTCCCCGCGCAGGCGGGGGTAATCCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [11,63] Score: 0/0.18 # # Final direction: F [0.78,0.37 Confidence: MEDIUM] >NC_019395 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3154316 28 100.0 33 CGCGACGAGG ............................ GGTGACTGCCGCTGCGCAGTCGCTGGGATGGAT 3154377 28 100.0 34 TGGGATGGAT ............................ GCGTCGAGCGACACGTCTGCGCGACGACTGGGAG 3154439 28 100.0 33 CGACTGGGAG ............................ TTCGGGGTGTGGGGCCAGCGGTGGGCGGCGAGC 3154500 28 100.0 33 GGCGGCGAGC ............................ GTCGACGGCCTACGTGGCCGCCCAGACGTCGAC 3154561 28 100.0 33 AGACGTCGAC ............................ AGCCGGCCTCGCGGAGCGCCTGGTCGATGGCCT 3154622 28 100.0 33 TCGATGGCCT ............................ GCGCCTGCAGGGCATGCAGGAGCAGACCCACCA 3154683 28 100.0 33 AGACCCACCA ............................ GTGATCATTGTTGTCGGTGTGGCCGAAATCATT 3154744 28 100.0 33 CGAAATCATT ............................ GGGTCTGGACCCGGATAGGTTCACCCGCCTGGC 3154805 28 100.0 33 CCCGCCTGGC ............................ GGCCTACGCCGCCGACCGCTGGCCCGATCTGAA 3154866 28 100.0 33 CCGATCTGAA ............................ GAACTCCATCTCGTCGGCCGTGGGGGCCGGGTT 3154927 28 100.0 33 GGGCCGGGTT ............................ GCAGATGGTGGCGGACCAGGCGGCAGGCCAGAC 3154988 28 100.0 33 CAGGCCAGAC ............................ GTGGACCGGCAACACTGCCGAGGCTGACAATGT 3155049 28 100.0 33 CTGACAATGT ............................ GCGCACCGTCACCACCCGGCTCACCACCAAGGG 3155110 28 100.0 33 CCACCAAGGG ............................ GGCCGCCCTCAACCGCGCCCAGGCCGCCGAGAA 3155171 28 100.0 33 CCGCCGAGAA ............................ GTCGAAGCGGCTCTACACCAAGCGCACCAAGCT 3155232 28 100.0 33 GCACCAAGCT ............................ GAGATGAGCAGCGATGAGAGACTGTCGGGGATC 3155293 28 100.0 33 GTCGGGGATC ............................ GTCCCCATTCCCACGTCCCACCGACTTGTTGTG 3155354 28 100.0 33 ACTTGTTGTG ............................ GTAGACCGAGAAGACGGATTGGAGTGCCTTGAA 3155415 28 100.0 33 GTGCCTTGAA ............................ GCGCTTGGGGCCGAGGATCTTCTCCTGTGTGGC 3155476 28 100.0 33 CCTGTGTGGC ............................ GTACCCGTTCGCGAGCCCCAAGTTCGCGGCGCT 3155537 28 100.0 33 TCGCGGCGCT ............................ GGGCGTCAAGGAGTGGCAGGACAATGTCAAGGG 3155598 28 100.0 33 ATGTCAAGGG ............................ GGAATTCTGCGATGACCGCGCTGATGGCGGCTG 3155659 28 100.0 33 ATGGCGGCTG ............................ GCATAGGAACCATGTCATTTCCTCCTCTCGATA 3155720 28 100.0 33 CCTCTCGATA ............................ GACGGTCACCGTCACGCCGACCTCCTCAGCGAG 3155781 28 100.0 33 CCTCAGCGAG ............................ GACCTCCGCCGAGGTATCGGACATGGCCAGCAA 3155842 28 100.0 33 TGGCCAGCAA ............................ GCTGCCCCCGTGATCCGGCTGGGGATCACGGGG 3155903 28 100.0 33 GATCACGGGG ............................ AGGTCTGATTCCGATCCGACCCCCCCGTAATCC 3155964 28 100.0 33 CCCGTAATCC ............................ GTGGCTGCGGCAGATAATGTCGGAGTCCTCCGG 3156025 28 100.0 33 AGTCCTCCGG ............................ GCAGTCCCAGGTCCTCGCCACGGCGAAGACGAA 3156086 28 100.0 CGAAGACGAA ............................ GCCTGGGATG ========== ====== ====== ====== ========== ============================ 30 28 33 GTCGTCCCCGCGCAGGCGGGGGTAATCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [21.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [247,148] Score: 0/0.18 # # Final direction: R [0.37,0.64 Confidence: LOW] >NC_019395 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3156565 29 100.0 32 NNNNNNNNNN ............................A GCCGGCCTCGCGGAGCGCCTGGTCGATGGCCT 3156626 29 100.0 32 NNNNNNNNNN ............................A GCCGGCCTCGCGGAGCGCCTGGTCGATGGCCT 3156687 29 100.0 32 NNNNNNNNNN ............................A GCCGGCCTCGCGGAGCGCCTGGTCGATGGCCT 3156748 29 100.0 32 NNNNNNNNNN ............................A GCCGGCCTCGCGGAGCGCCTGGTCGATGGCCT 3156809 29 100.0 32 NNNNNNNNNN ............................A GCCGGCCTCGCGGAGCGCCTGGTCGATGGCCT 3156870 29 100.0 32 NNNNNNNNNN ............................A GCCGGCCTCGCGGAGCGCCTGGTCGATGGCCT 3156931 29 100.0 32 NNNNNNNNNN ............................A GCCGGCCTCGCGGAGCGCCTGGTCGATGGCCT 3156992 29 100.0 32 NNNNNNNNNN ............................A GCCGGCCTCGCGGAGCGCCTGGTCGATGGCCT 3157053 29 100.0 32 NNNNNNNNNN ............................. TACCCGTTCGCGAGCCCCAAGTTCGCGGCGCT 3157114 29 100.0 32 NNNNNNNNNN ............................. TACCCGTTCGCGAGCCCCAAGTTCGCGGCGCT 3157175 29 100.0 32 NNNNNNNNNN ............................. TACCCGTTCGCGAGCCCCAAGTTCGCGGCGCT 3157236 29 100.0 32 NNNNNNNNNN ............................. TACCCGTTCGCGAGCCCCAAGTTCGCGGCGCT 3157297 29 100.0 32 NNNNNNNNNN ............................. TACCCGTTCGCGAGCCCCAAGTTCGCGGCGCT 3157358 29 100.0 32 NNNNNNNNNN ............................. TACCCGTTCGCGAGCCCCAAGTTCGCGGCGCT 3157419 29 100.0 32 NNNNNNNNNN ............................. TACCCGTTCGCGAGCCCCAAGTTCGTATCTCC 3157480 29 100.0 32 NNNNNNNNNN ............................. GCTCACAACATCAGCGCCGACCAGCTGATGAA 3157541 29 100.0 32 NNNNNNNNNN ............................. CCCTTCGTCTTCGCCGTGGCGAGGACCTGGGA 3157602 29 100.0 32 NNNNNNNNNN ............................. CGCCTGAACCCGGCGACCGGGCAGCTGGAGTC 3157663 29 100.0 32 NNNNNNNNNN ............................. GTCACACGATGCCGGCCAGGCGCTTCGCCAAA 3157724 29 100.0 32 NNNNNNNNNN ............................. GCCGAGGCGCGCAATGACCGGCTGCTCTCGAA 3157785 29 100.0 32 NNNNNNNNNN ............................. GCGGTCTCGCGCGGGCACAGGTCATCGCGAGG 3157846 29 100.0 32 NNNNNNNNNN ............................. GCCATCTCGACGCTCCACAAGTCCGTGGTGAA 3157907 29 100.0 32 NNNNNNNNNN ............................. CGTATCCCGTCCCGGAAGGGCGGGATGTCCAG 3157968 29 100.0 32 NNNNNNNNNN ............................. GACGGGCGCACGCAATGCCGGACCTGTCAGAA 3158029 29 100.0 32 NNNNNNNNNN ............................. AGCAGCCCGCACAGGTCGAGCAGCAGCCTCAG 3158090 29 100.0 32 NNNNNNNNNN ............................. CCCAGCTCGCTCACCTCGACGCCGGTGAACGC 3158151 29 100.0 32 NNNNNNNNNN ............................. CAGCCGGTCCTTGCCACCCTGCCTGAGGCTTA 3158212 29 100.0 32 NNNNNNNNNN ............................. CTCCTCTACACCGACTCCACCACCGCCCAGCG 3158273 29 100.0 32 NNNNNNNNNN ............................. AACTGCGCGTCACACATCAGGCAGCCCGCCGA 3158334 29 100.0 32 NNNNNNNNNN ............................. CTCCAGCGCAGCACGGGCAGCGCCACACCGCA 3158395 29 100.0 32 NNNNNNNNNN ............................. GCCAGGTCGACGGTGGCCGTCTCCGTGGTCCC 3158456 29 100.0 32 NNNNNNNNNN ............................. CTCAGCCGCTCGGCACGGCGGCGCTGCTTCCT 3158517 29 100.0 32 NNNNNNNNNN ............................. GACGCCCTGGACAATCTGACCCTGTCCCAGGA 3158578 29 100.0 32 NNNNNNNNNN ............................. CGTTTTTGATGTACAGCCACATTCCGGTAATC 3158639 29 100.0 32 NNNNNNNNNN ...............A............. CGGAGACGACGCCCTGCACGGCGGTTTTGACC 3158700 29 100.0 32 NNNNNNNNNN ............................. CCCGCCGATGATTGGGAGGGGCAGAACATGCA 3158761 29 100.0 32 NNNNNNNNNN ............................. ACCCACGCGGACGGGCGCACCCGATGGCTGCC 3158822 29 100.0 32 NNNNNNNNNN ............................. CTCGCCGCCCACCGCTGGCCCAACATCCCGAA 3158883 29 100.0 32 NNNNNNNNNN ............................. AGGTCCGGCGCCGCGCGTACATGGGGCTCGTC 3158944 29 100.0 32 NNNNNNNNNN ............................T CGGACCTCACCATCAATCCCGATCAGCGAGGC 3159005 29 100.0 32 NNNNNNNNNN ............................T CGAACAGCCATGAGCACCGCCGACGAGATCGT 3159066 29 100.0 32 NNNNNNNNNN ............................. GTTCGCCTCACCCCGAAGGGCATCTACCGCAT 3159127 29 100.0 32 NNNNNNNNNN ............................. CCCTTCGGGATCGGCACCTTGGGCATTGTCTT 3159188 29 100.0 32 NNNNNNNNNN ............................. CTGTCGCAGGAGGAGGCGGACGCGGCGAAGTC 3159249 29 100.0 32 NNNNNNNNNN ............................. GACTTTCCGGCGATCCCGCCCAGCGGCTTGGC 3159310 29 100.0 32 NNNNNNNNNN ............................. CTGCGGGTCCTTACCGATGGCCAGGTGCAGAC 3159371 29 100.0 32 NNNNNNNNNN ............................. GTCTCCGACGATGAGACGATCACGATCACAAA 3159432 29 100.0 32 NNNNNNNNNN ............................. CGACGGCGGCCTGTGTGGTGGCGTCCATGCTG 3159493 29 100.0 32 NNNNNNNNNN ............................. TACAGCCCGCGTCCGGGTGACATCTCGCTGAT 3159554 29 100.0 32 NNNNNNNNNN ............................. TGGTCCGGCGCCATGCAGGCCCCCTACGCCCG 3159615 29 100.0 33 NNNNNNNNNN ............................. CTCCGGCGAAGACGCAAAATACGGGATCCGAGG 3159677 29 100.0 32 NNNNNNNNNN ............................. GTGGCGATGTCGGCGAGGGAGTAGCCGAGTTG 3159738 29 100.0 32 NNNNNNNNNN ............................. CGGTAGGGGACGTCACCGAACAGGGTGAGGAA 3159799 29 100.0 32 NNNNNNNNNN ............................. TCCGGCACCGTGGGGATCCCAGCCCCCGATCC 3159860 29 100.0 32 NNNNNNNNNN ............................. CCCGCTATCGGCGTCGTGTCCCGCCAGGATGG 3159921 29 100.0 32 NNNNNNNNNN ............................. GGAATACGGATTGACATTGTCCAGCTTGAAAT 3159982 29 100.0 32 NNNNNNNNNN ............................C GTGGCCTATGTCACATCGGTTTCTGGTAATAA 3160043 29 100.0 32 NNNNNNNNNN ............................. AATCCCTGAATCTTCCGGATGGCGTCGATGAT 3160104 29 100.0 32 NNNNNNNNNN ............................. TACCAGTCCTTGTTGAGCGCGGTGTTGCCGAG 3160165 29 100.0 32 NNNNNNNNNN ............................. GACGCGCAGAACTACCTCGACGGGCCCAAGGA 3160226 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 61 29 32 GTCGTCCCCGCGCAGGCGGGGGTAATCCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-1] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [154,21] Score: 0.18/0.18 # # Final direction: R [0.55,0.64 Confidence: LOW] >NC_019396 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 25559 29 100.0 32 NNNNNNNNNN ............................. GTGCTGTTTTGGACTTTTTCGGGCCCGGTCAA 25620 29 100.0 32 NNNNNNNNNN ............................. CCATTTGCGCGGCCGTCACCAAATCCCGTGAA 25681 29 100.0 32 NNNNNNNNNN ............................. AAGGACAGCGCAAGCGGCTTTCAACAGGTACA 25742 29 100.0 32 NNNNNNNNNN ............................. GTGATTTTCCGGGTCACAGATACCTCCCATTC 25803 29 100.0 32 NNNNNNNNNN ............................. ACGCCGGCAGCCGTGTAGCCGGTCAGAGCAAT 25864 29 100.0 32 NNNNNNNNNN ............................. GACGGCATTTTTCAGAAGCACGCGCGCATCAT 25925 29 100.0 1 NNNNNNNNNN ................T........G... NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 7 29 32 GTGTTCCCCGCATGTGCGGGGATGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [58.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [240,178] Score: 0/0.18 # # Final direction: F [0.68,0.37 Confidence: LOW] >NC_019429 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 39846 37 100.0 34 NNNNNNNNNN TC..TTT.TGGCT.C..TATTG............... TTTGACCTTTCTAATATTAATGCCACTTTTGGTG 39917 37 100.0 36 NNNNNNNNNN ..................................... TCAGGTAATTTTCACCATTAGTTTTTGACTTTTTTA 39990 37 100.0 35 NNNNNNNNNN ..................................... ATGAAGGTTGGGATAATGGCACAATTTTATAAAAT 40062 37 100.0 34 NNNNNNNNNN ..................................... TTTCTACGATCAGAGACTGCTGTCTACGATCAGA 40133 37 100.0 37 NNNNNNNNNN ..................................... TGCTTCCATTGTCGAATCACCGCCAGACAATTCCAGT 40207 37 100.0 1 NNNNNNNNNN .....................C.G.G....CGCATC. NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 6 37 35 GTTTCAATCCCTAATAGGGAGTAAGTGAAATTGCAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [16-9] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [75,265] Score: 0.18/0.18 # # Final direction: R [0.37,5.36 Confidence: HIGH] >NC_019396 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 99852 29 100.0 32 ACAAACAAGG ............................. CACTTCCACGGCAGCAACCTGCGCAACCTCTT 99913 29 100.0 32 GCAACCTCTT ............................. CGGACGGGCTACACTGAGGGCGTTGGTCAGCC 99974 29 100.0 32 TTGGTCAGCC ............................. CCGTATCGCTACGGTACAGGTTTCCGTCCTTG 100035 29 100.0 TCCGTCCTTG ............................. GGCGGCCCGAACGTGTTCACCACGTCCTGGAT ========== ====== ====== ====== ========== ============================= 4 29 32 GTGTTCCCCGCACACGCGGGGATGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [65.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [63,136] Score: 0.18/0.18 # # Final direction: F [0.64,0.18 Confidence: MEDIUM] >NC_019429 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 14353 37 73.0 37 TTTAGATGCG -------....C.C.G..................... ACTGGAATTGTCTGGCGGTGATTCGACAATGGAAGCA 14427 37 100.0 34 AATGGAAGCA ..................................... TCTGATCGTAGACAGCAGTCTCTGATCGTAGAAA 14498 37 100.0 35 ATCGTAGAAA ..................................... ATTTTATAAAATTGTGCCATTATCCCAACCTTCAT 14570 37 100.0 36 CAACCTTCAT ..................................... TAAAAAAGTCAAAAACTAATGGTGAAAATTACCTGA 14643 37 100.0 AATTACCTGA ..................................... CACCAAAAGTGGCATTAATATTAGAAAGGTCAAA ========== ====== ====== ====== ========== ===================================== 5 37 35 ATTGCAATTTCACTTACTCCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.20,-5.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [272,139] Score: 0/0.18 # # Final direction: F [4.5,0.78 Confidence: HIGH] >NC_019439 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 157018 31 100.0 28 NNNNNNNNNN .........................A..... ATTCTGAGGCGGACTTTTTGCTATTAGC 157077 31 100.0 28 NNNNNNNNNN ............................... ATTCTGAAGCGGACTTTTTGCTATTAGC 157136 31 100.0 19 NNNNNNNNNN ............................... ATTCTCAGGCGCTATTATC 157186 31 100.0 1 NNNNNNNNNN ............................... NNNNNNNNNN ========== ====== ====== ====== ========== =============================== 4 31 25 CATGGCTTCGCCACGCAGGCTATCAGAATTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [7,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.00,-4.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [233,57] Score: 0.18/0.18 # # Final direction: R [0.45,0.78 Confidence: LOW] >NC_019673 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2015652 37 100.0 35 NNNNNNNNNN ..................................... TCCGGGTCAAGGCGTACCCGACACCCGGATGGTGA 2015724 37 100.0 35 NNNNNNNNNN ..................................... CCTGGTCGGGACCCTGGACCGTCAGTGCGGGGCGC 2015796 37 100.0 36 NNNNNNNNNN ..................................... GCCTTCGCGATCAGCGCCTCGGCTTCGACCATGTCC 2015869 37 100.0 34 NNNNNNNNNN ..................................... TCCCCGTCCATGCGTGGGTGGACGCACGTCAGCC 2015940 37 100.0 35 NNNNNNNNNN ..................................... ACGGGTCGTTGACGTTGACCGCGGCGTCGTCGGAC 2016012 37 100.0 37 NNNNNNNNNN ..................................... CGGTAACCCTCAGTCGGGTGTGAGCATCGCGACTCGC 2016086 37 100.0 37 NNNNNNNNNN ..................................... TGTTCATCCTGGTCGACAACGCGGCCAGCCGCACGCA 2016160 37 100.0 35 NNNNNNNNNN ..................................... TCCGAGTCCGGCAACATAGCGATAAGCGACCGGGG 2016232 37 100.0 37 NNNNNNNNNN ..................................... TTCAGGTAACCGTGCGGGAACGGGGGGACGGCGAACA 2016306 37 100.0 37 NNNNNNNNNN ..................................... CTGGCGTACCGGCGTGAGATCGACTCCCGTCCCTCCT 2016380 37 100.0 34 NNNNNNNNNN ..................................... GACGGCGGCTTCCGGCACGCCCGCAAGTGGGTGG 2016451 37 100.0 33 NNNNNNNNNN ..................................... CGGAAACCCGGAACGGGTCGGGCAGGTGGAGCC 2016521 37 100.0 36 NNNNNNNNNN ..................................... TGTGTGCGTTCACCGCCCCTGCTCTCCCTAGCGTGG 2016594 37 100.0 37 NNNNNNNNNN ..................................... TTGGCCCCGAGTGCGCCCTGTACGTGGCCGTAGAGAC 2016668 37 100.0 34 NNNNNNNNNN ..................................... GCGATCGTCCACAACGGCCGGCGAACGGCGGCCC 2016739 37 100.0 34 NNNNNNNNNN ..................................... GACTACCTTCGTTTTGATGCATCTCCGGGTCTGG 2016810 37 100.0 35 NNNNNNNNNN ..................................... GAGTTCGCCGACCTGACCGAGGTGGAGTTCGGCGA 2016882 37 100.0 36 NNNNNNNNNN ..................................... GCGTGCAGGGTGATGGTCCCGTCGTCGTGCACCACG 2016955 37 100.0 36 NNNNNNNNNN ..................................... CAGGAGGCGCGGCTGGATCACCTGTCCGGGGTCGCG 2017028 37 100.0 34 NNNNNNNNNN .............T.T..................... GCGAACGCCTCGTCCGAGGCCTCGCGGAACGACT 2017099 37 100.0 34 NNNNNNNNNN .............T.T..................... CTGCTCGACCGGCCGCAGGCACTCGACCGGCTCG 2017170 37 100.0 35 NNNNNNNNNN .............T.T..................... GCTGGCACGGTGACCGACGAGCGCGCGTGGCTGGC 2017242 37 100.0 34 NNNNNNNNNN .............T.T..................... TACGGCAGGGCCGTGAACGACCACACCAAGGAGG 2017313 37 100.0 36 NNNNNNNNNN .............T.T..................... CGCTTTCCGGTTGCGTGCACGCCGCGTGAGCGGACG 2017386 37 100.0 35 NNNNNNNNNN .............T....................... GGCGCGTTGTCGACCTTCGGGTACGCACAGTGGGT 2017458 37 100.0 34 NNNNNNNNNN .............T....................... GACCGGGCCGTCGCAGACCCGGTGCGCGCAGTCG 2017529 37 100.0 36 NNNNNNNNNN .............T....................... ATCGGCGAATCACCCACCCGCGGATCGGTCGGGTTG 2017602 37 100.0 35 NNNNNNNNNN .............T.....C................. GAGGTCGACTTCGAGGAGCTCACCCGCACCAACCG 2017674 37 100.0 36 NNNNNNNNNN .............T....................... CGCTACCGGCTGCCCGAGGCGGGGCGGCTGTGGGAC 2017747 37 100.0 36 NNNNNNNNNN ..................................... CGGTCCGCCGACGCGGCGGAGGTCGGCCGCCTCATG 2017820 37 100.0 37 NNNNNNNNNN ..................................... TTCGGGATGTCCTGGATCGCGCGCACGTCGTCGTTCG 2017894 37 100.0 34 NNNNNNNNNN ..................................... CCCGACGACCCGTTCATCCGCGAGATCGACGAGC 2017965 37 100.0 36 NNNNNNNNNN .......C.....................GG...... CTGCACGTGTTGGACGGGGCCTGGAACGTCACCAGC 2018038 37 100.0 1 NNNNNNNNNN .........A.G.....A.G.......A......... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 34 37 35 GCAGCGCTGGAAGCCCGCTTCCAGCGAGGATCGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-12.90,-12.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [50.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [427,880] Score: 0.18/0.18 # # Final direction: F [1.42,0.18 Confidence: HIGH] >NC_019673 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2033919 28 96.4 33 CCGGCGCACC .....................A...... CATGGTCTTGGCGGCGTGGCCGTCTTGGCTGGC 2033980 28 100.0 33 CTTGGCTGGC ............................ GGCAGCCCAAATCGAACCGCCCCCACCACGGCA 2034041 28 100.0 34 CACCACGGCA ............................ GTGGGAGTGGGACTGCCGCGACTACGAGTTCTGG 2034103 28 100.0 33 CGAGTTCTGG ............................ CCGACGCCATCCGAGCCGCTGAACCGCAGGCAG 2034164 28 100.0 32 CCGCAGGCAG ............................ TTGCGGGGAGACGTCGCACAGCTCGGCGAACT 2034224 28 100.0 33 TCGGCGAACT ............................ ATGCTGTGGTGCAGCCACAGCTCCCGGCCGACC 2034285 28 96.4 33 CCGGCCGACC ...................A........ CGGTCGCGGGTGATCCCGCTGGTGCTGGTGGGG 2034346 28 100.0 33 GCTGGTGGGG ............................ TCGCTGGTATGCATACGAAGGGTATTGCGCTCG 2034407 28 100.0 33 ATTGCGCTCG ............................ CGCAAGCTTGTGCGCCACGGCCGGTGCGACCGC 2034468 28 100.0 33 GTGCGACCGC ............................ TGCCGGTCGGGTCCGGGTGAGGGTGGTGCCGAC 2034529 28 100.0 33 TGGTGCCGAC ............................ CGCAGCATGAACGGCGACGAGCGCGGCGACATG 2034590 28 100.0 33 CGGCGACATG ............................ GTCGCTGTGGTCGTCGGGGAGGGCGACACGGAG 2034651 28 100.0 33 CGACACGGAG ............................ ACGCCTCTACGAGACCCGCAGTGAGGCCATCCG 2034712 28 100.0 33 AGGCCATCCG ............................ TTCGAGGCCGCGACCGACAAGGACCTGGAGGAC 2034773 28 100.0 33 CCTGGAGGAC ............................ GTCACGACCGTCATCGGCGCTACGACAGTGAAC 2034834 28 100.0 33 GACAGTGAAC ............................ TTCCGCGAGGCGACGCGTGAGTCCGGCGCGGCC 2034895 28 96.4 33 CGGCGCGGCC ...................A........ ATCGTCACCAAACCGCTCGACCGGCCCGGAACG 2034956 28 100.0 33 GCCCGGAACG ............................ CACTGGACCGACGCCGAAGCGCTGGGGATTGAG 2035017 28 100.0 33 GGGGATTGAG ............................ CCACAAGGTCAGCGGGTCGCGGAGTGAGGCGGG 2035078 28 100.0 35 GTGAGGCGGG ............................ GGCAACGAGAGTACGAGGCATGTGCGGGGCTCTCC 2035141 28 100.0 33 GGGGCTCTCC ............................ CCACCCGGCGGGGCCTTTTCGCAGGTCGAGACC 2035202 28 100.0 33 GGTCGAGACC ............................ GGCATGGCCGCGTCCGCGAACGACCAGACCGGT 2035263 28 100.0 33 CCAGACCGGT ............................ GTTCGGCGTAACTTTGGTGATCTTCCTGGGGGT 2035324 28 100.0 33 TCCTGGGGGT ............................ GCGCGCTATGTCCCCGGCGAGTGGCACGTGGAC 2035385 28 96.4 33 GCACGTGGAC ..................T......... CCCGGCATGAGCCCGGACGAGTTCATCAAGACG 2035446 28 100.0 33 CATCAAGACG ............................ GCTGGCCGTCGGACAGGACTGCGGTGTGGGTGA 2035507 28 100.0 33 GTGTGGGTGA ............................ CTTCCGAGCCACAGCCCGGAACGGCAGCGGCAG 2035568 28 100.0 33 GCAGCGGCAG ............................ TCGATCCCGACGACGTGGGCCCCGCCGAGGACG 2035629 28 100.0 33 GCCGAGGACG ............................ ATCCCGGGCGCCGCGTAGGTACTCGTGCACGGC 2035690 28 100.0 CGTGCACGGC ............................ ACTTCTTGAC ========== ====== ====== ====== ========== ============================ 30 28 33 GGACCACCCCCGCTCGCGCGGGGAAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,1] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-12.30,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1350,310] Score: 0.18/0.18 # # Final direction: R [0.55,1.05 Confidence: LOW] >NC_019673 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2046230 28 100.0 33 NNNNNNNNNN .A....T......C.......A...... CCGAGCCGTGCCGGGCCTCGCGCCGCGATCTGG 2046291 28 100.0 35 NNNNNNNNNN ...A..T......C....A......... GGACAACGCGCCACCGCCTACGAGGCCGCCGCGCG 2046354 28 100.0 33 NNNNNNNNNN ......T..................... GTTGGCGCCTTGGTCCTCGTCGCCGGGGACGGG 2046415 28 100.0 33 NNNNNNNNNN ...............TT........... CAGGCAGCCCTGCGACTGCACTGCGACGAGGGC 2046476 28 100.0 33 NNNNNNNNNN ............................ ACGGGCAGCACCGCCGCGCCTGCCGGGCCCGAG 2046537 28 100.0 33 NNNNNNNNNN ..G...........C............. TCCGCGTGGCCCTCGAATCCGGGGATCAGACCC 2046598 28 100.0 32 NNNNNNNNNN ............................ CGGTCGACCTGGCGACCGGCACCAGGCGCGCG 2046658 28 100.0 32 NNNNNNNNNN C.GA.CA..................... GCCGCAAGGTCAAGTTCTTCTCGTCGCCGCTG 2046718 28 100.0 34 NNNNNNNNNN C.GA.CA..................... CGGCCCAGTGCCCAGCACGAGCTTGTGAGCGGCC 2046780 28 100.0 33 NNNNNNNNNN ...........A................ CAGGTAGGCCGGGTCCGCGAGTTCAGCGCGGTG 2046841 28 100.0 33 NNNNNNNNNN ............................ GGTGGCGACGAGGAGGCGGGGCGATGACCCGGA 2046902 28 100.0 33 NNNNNNNNNN ............................ CCGGTGAGCCCGGCCGCCCCGGTCAGTCGGGCC 2046963 28 100.0 33 NNNNNNNNNN ............................ TGCCATCTAGACCGCCAAATTCGCGTCGTAGTA 2047024 28 100.0 33 NNNNNNNNNN ............................ CTGTGGTCCAACCGCCCGTTCGAGCAGCACCTG 2047085 28 100.0 33 NNNNNNNNNN ............................ GCGGTGGCCGGTTTGTCCGGCGGCGAGGTTGGC 2047146 28 100.0 33 NNNNNNNNNN ............................ GCGGTGGCCGGTTTGTCCGGCGGCGAGGTTGGC 2047207 28 100.0 33 NNNNNNNNNN ............................ GCGGTGGCCGGTTTGTCCGGCGGCGAGGTTGGC 2047268 28 100.0 33 NNNNNNNNNN ............................ GCGGTGGCCGGTTTGTCCGGCGGCGAGGTTGGC 2047329 28 100.0 33 NNNNNNNNNN ............................ CCCGGCGGCCGAGGTGGCGGGGAGACGACGACG 2047390 28 100.0 33 NNNNNNNNNN ............................ GCGGGGTCTGATGCGCACGCCTCGGCCAGCTTC 2047451 28 100.0 33 NNNNNNNNNN ............................ GTCGTGGCGGGTGCCTGCACGGCAACCGGGCTG 2047512 28 100.0 33 NNNNNNNNNN ......T..................... CGTGCGACGCCTCGGCGCAGGCAGCGCCAGCCG 2047573 28 100.0 33 NNNNNNNNNN ............................ CGCCGTGGGCCGCCACACGGTGGCCCACTTCCA 2047634 28 100.0 33 NNNNNNNNNN ............................ GGATTGTTGATGCTTTATGGCGGGTGCCCAGAC 2047695 28 100.0 33 NNNNNNNNNN ............................ AAACGTTGTGCCTCGGCCTTCGGAACACGCGCG 2047756 28 100.0 33 NNNNNNNNNN ............................ GGCGGCCGCCGGTGCTGCGTTCTGGTCGCGCTG 2047817 28 100.0 33 NNNNNNNNNN ............................ CGACTGGTTGACTGCGGATCACGGGCGGGCTCC 2047878 28 100.0 33 NNNNNNNNNN ............................ GGCGGCGTGAACCTCACGACGATCCAGACCGAC 2047939 28 100.0 33 NNNNNNNNNN ............................ GATGGTGAAGGTGACCGCCCAGACCGGCCGGCC 2048000 28 100.0 33 NNNNNNNNNN ............................ CGCGACGCAGGCGGCGGCAGCGGCCGCGGCGGA 2048061 28 100.0 33 NNNNNNNNNN ............................ CACGTCGCCGACCAAGCCCTTGAGGTTGGCGGA 2048122 28 100.0 34 NNNNNNNNNN ............................ CACGTCGCCGACCAAGCCCTTGAGGTTGGCGGGC 2048184 28 100.0 33 NNNNNNNNNN ............................ GGCCTTGGCCAGCGTCTCTTCCTCGTCGGCGAG 2048245 28 100.0 33 NNNNNNNNNN ............................ CAGTTCGGGTGGGCGACCGTGTCGCGCCAGAAC 2048306 28 100.0 33 NNNNNNNNNN ............................ TCGTGCCGCGCCTTGCGCGCCACCGCCTCGGTG 2048367 28 100.0 37 NNNNNNNNNN ............................ TTCAAGCACGCCCGCGACTACCCGCGCCCGCACAAGC 2048432 28 100.0 33 NNNNNNNNNN ............................ CACCTCGCGCTGACGGACCGGATCACGCCGCTG 2048493 28 100.0 34 NNNNNNNNNN ............................ CGAGATCACCGCCGGCGGGCAGTTCATCGTCAGC 2048555 28 100.0 33 NNNNNNNNNN ............................ CCCGACACGTGGCGTCGATGGTGGACCGTCGAC 2048616 28 100.0 33 NNNNNNNNNN ............................ CCCGACCCGGCCGCCACCGCAGCCGCCGTCACG 2048677 28 100.0 33 NNNNNNNNNN ............................ GTGCGCGGGTAGTCGTAGCCGTAGCGCAGCAGG 2048738 28 100.0 33 NNNNNNNNNN ............................ TCGATCTGGCCGGCCCGGCTGGTGGTCTGCAAC 2048799 28 100.0 33 NNNNNNNNNN .......T.................... AGCCGGTGCACGGCGAGGGGCACGTCGGGTGCC 2048860 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 44 28 33 GGACCACCCCCGCGTGCGCGGGGAAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,1] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.40,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [14-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [28.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [575,106] Score: 0.18/0.18 # # Final direction: R [0.55,0.68 Confidence: LOW] >NC_019673 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2095934 37 100.0 37 GTCATCCAGG ..................................... GCTGCCGTCGCGGACGTGGTCGATCGCGGTGACGCTC 2096008 37 100.0 36 GGTGACGCTC ..................................... GACGACTCGCCGGCCTTCGGGCACGCCCGCCGGCTG 2096081 37 100.0 34 CCGCCGGCTG ..................................... GCCGAACGCGATGGTGCCCCGGTGGCGACGTGCT 2096152 37 100.0 36 GCGACGTGCT ..................................... GGGCTCTTGGCCGGGTACCCGGGGCACTTGGTGAGC 2096225 37 100.0 36 CTTGGTGAGC ..................................... CCGGTCGGCCTCGACGAGCGCTTGGTCGACGATCTG 2096298 37 100.0 36 CGACGATCTG ..................................... TATGTGCCGTTCGAGGACGGGGCGGACATGGTTTCC 2096371 37 97.3 CATGGTTTCC .............................G....... TTGTAGTTTT ========== ====== ====== ====== ========== ===================================== 7 37 35 GCAGCGCTGGGAGCCCGCTTCCAGCGAGGATCGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [7,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-12.40,-7.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [45.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [677,358] Score: 0/0.18 # # Final direction: F [1.42,0 Confidence: HIGH] >NC_019676 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2728758 37 100.0 34 ATTAGGAATT ..................................... TTCAAGGTCTGGGGTGTAGGGTTAGACCCCTCAT 2728829 37 100.0 35 GACCCCTCAT ..................................... CCTCTGTCTGCTCTGTAATCCTTAACTACTCCATC 2728901 37 100.0 34 CTACTCCATC ..................................... CATTCAGAAAGATTCCAGCTTCATCAAGACATAC 2728972 37 100.0 34 CAAGACATAC ..................................... GTAAAAATATTCGTCCAGTTAAATTAAATGATTC 2729043 37 100.0 37 TAAATGATTC ..................................... TGACGCTGACTCACTGGCACTTGCTTGTTACCAATTT 2729117 37 100.0 41 TTACCAATTT ..................................... TGCTAGAGGCTCTCCGCTTGTTGAAGGCGAAACACTTAACT 2729195 37 100.0 34 ACACTTAACT ..................................... CATTTTCTTGATTATTCATTATCTAATCCTTAAG 2729266 37 100.0 34 AATCCTTAAG ..................................... CCAATGGTTTGAGTCGGTTTCTTTAGGGTTTACA 2729337 37 100.0 36 AGGGTTTACA ..................................... ATTTATTGTAAATCCTGGAATAAATAGGCGAAGAAA 2729410 37 100.0 33 GGCGAAGAAA ..................................... GCTGACTCACTGGCACTTGCTTGTTACCAATTT 2729480 37 100.0 35 TTACCAATTT ..................................... CTTAGTAATCAAAAATGTAATCAAAGGATGAACCA 2729552 37 100.0 36 GGATGAACCA ..................................... TTGATAAGTAAACTAAAACCGAAAGTAGCAACGAGC 2729625 37 100.0 AGCAACGAGC ..................................... TGATTATCAA ========== ====== ====== ====== ========== ===================================== 13 37 35 GTTTCAATCCCTAATAGGGATTAGGTGAAGTTTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.30,-7.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [221,735] Score: 0.18/0.18 # # Final direction: R [0.27,4.68 Confidence: HIGH] >NC_019676 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 3313064 35 100.0 41 TATCTACATC ................................... TTGGACGACGCGACTCGAGAGGATTCTCCCCTCAGAAAATT 3313140 35 100.0 38 TCAGAAAATT ................................... CATAAGTAAAATTGCGACTCATTCCGCAGGAAGTAACT 3313213 35 100.0 39 GGAAGTAACT ................................... ATGTACGTATGGTGGACTATAATTATATCCGGGGATGTC 3313287 35 100.0 34 CGGGGATGTC ................................... CTTAAAAATTTGCAATTCTTTACACTGATTAATT 3313356 35 100.0 36 CTGATTAATT ................................... CCAAGGGTGCCTTGCTGCAACGCGGTTACAACAAAA 3313427 35 100.0 37 TACAACAAAA ................................... AAACCTAATAGACCACCAGTAACCGCGCTGAAACCAG 3313499 35 100.0 34 CTGAAACCAG ................................... TTTAATTTCAGTCTGACTAATGCTTGGAGCAGGG 3313568 35 100.0 38 TGGAGCAGGG ................................... TTTTTTTACTTCAGTTTCAAAAACTGTCAGATCAAAAT 3313641 35 100.0 35 AGATCAAAAT ................................... CTCAAGGACAAGGCAGGAACCTAAGCCCCTGAACT 3313711 35 100.0 38 CCCCTGAACT ................................... CCTTTCCCGCTTAAGCGGTGAAGGATATCCAAATTATA 3313784 35 100.0 38 CCAAATTATA ................................... TCTGTCGCATCGGGATTTATCCCGATGCAAACTTTGGT 3313857 35 100.0 40 AAACTTTGGT ................................... CTGAAGTAGTTGCGCGGCGAGCTGTGCTGGTGTGATTGGA 3313932 35 100.0 TGTGATTGGA ................................... TCAGCAGTATCTCGTTTGACACTGTCCAACGGAAGGT ========== ====== ====== ====== ========== =================================== 13 35 37 GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.29%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1296,135] Score: 0.18/0.18 # # Final direction: R [0.18,4.87 Confidence: HIGH] >NC_019676 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 3306115 35 100.0 34 ATGGCAAAAC ................................... GGAGATTTGCAAAAAATAAAAAACGCTATGTCAA 3306184 35 100.0 46 GCTATGTCAA ................................... CTCTCTGCAAAATCAGGGAGAAGAATTGACCCCTGAGGAAGAAGCC 3306265 35 100.0 38 GGAAGAAGCC ................................... AAGAGAGATCCACATATTTTTACAGTTGAAATTCTTGA 3306338 35 100.0 38 AAATTCTTGA ................................... TCTTTGTATTAGGATCACTAGCATACTTCCACCATGAG 3306411 35 100.0 37 CCACCATGAG ................................... CCTAAATGGAGAACAGCTTACTTCCAAAACTGTAAAT 3306483 35 100.0 40 AACTGTAAAT ................................... TTATAGAAAAAGGCGGAGCCGCATTCGATGCGGCGATCAA 3306558 35 100.0 36 CGGCGATCAA ................................... TTGTCACGGATATTTTGTTGCCTGGGTGGCAAAAGC 3306629 35 100.0 36 TGGCAAAAGC ................................... ACGTTTTTGTGTTGGTAAGCAATGCTGCTGGGGATC 3306700 35 100.0 42 GCTGGGGATC ................................... ACTTGAGTTTCACTCTAAAGGACAGGGTGTTGCTGTAGTAAA 3306777 35 100.0 38 CTGTAGTAAA ................................... AATTGGCAAATTTCTGCGTTTGGAGGGATTGTGTTTCC 3306850 35 100.0 39 TTGTGTTTCC ................................... AATGTCGCAAAGAAAAATCTTCGAGATAAGATTAGAAGT 3306924 35 100.0 45 GATTAGAAGT ................................... CGTATCATATAGGCGAAGATAGTCTTAAAGACTGGGGTATTCTTT 3307004 35 100.0 36 GGTATTCTTT ................................... CACAAGATGTGCGCAATAACTTGGAGCAGAGAAAAA 3307075 35 100.0 39 CAGAGAAAAA ................................... GATGTGCTTTGAATTTTTCAAAGCACAAAGTCAGCCATT 3307149 35 100.0 37 GTCAGCCATT ................................... TAGTGGTAGTTTTGGCGAAACTACATGCAACGACAAA 3307221 35 100.0 38 CAACGACAAA ................................... AATTTTCGCCGAGCGGCGGCGTGGGCGGAGCAGCAACG 3307294 35 100.0 39 AGCAGCAACG ................................... CATTCGGCATTCTGGCTCGGTTGGAGGTCGCATTCGTGA 3307368 35 100.0 40 GCATTCGTGA ................................... GATATAGTTGCCTCGCTTGCAACTTTAATAGCACATAAAA 3307443 35 100.0 37 GCACATAAAA ................................... TCTGGGGCAAAACATCACCTTGTCGTACGGTACCGAG 3307515 35 100.0 36 CGGTACCGAG ................................... GAATTCTAGAGTTAATGTCTCAAAAGGGCTATTCTA 3307586 35 100.0 38 GGCTATTCTA ................................... ATTAAATGGTTACCAGCTCCTGAGAGGCTGGCAACTAT 3307659 35 100.0 40 TGGCAACTAT ................................... TTTTTATTTTCCCATTTCATCTCCTGCGGGAGGGGAGATG 3307734 35 100.0 41 AGGGGAGATG ................................... CACAAAAGATCTCAGAAAGGGGCAAGCGCATCCTCGCCCTG 3307810 35 100.0 CCTCGCCCTG ................................... CCTACTCTTA ========== ====== ====== ====== ========== =================================== 24 35 38 GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.29%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [65.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [38,327] Score: 0.18/0.18 # # Final direction: F [0.64,0.18 Confidence: MEDIUM] >NC_019676 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================== ====== 3300504 34 100.0 36 CCGCATGATA .................................. AGAAAACGTAAGGCACATGAACGCGATTATTCAAAG 3300574 34 100.0 39 TTATTCAAAG .................................. CCCTTATTAGGCGTGGTGCTTTTGAGAATGGGTTTTTTG 3300647 34 100.0 41 GGGTTTTTTG .................................. AAATTGGAGATTTTAGACATGTCTGGACAAATTATTTCCGG 3300722 34 100.0 27 TTATTTCCGG .................................. AAGCCGGTTAAGACATAATTTTTAGCC 3300783 34 79.4 40 ATTTTTAGCC -------........................... CGGGTCTAAAGGGTATGCGTTACGTTTCCTGATAGAGTTG 3300857 34 100.0 39 GATAGAGTTG .................................. TGCAACCCCCAGATCCCATTCAGCCGGGATTAAACTTTG 3300930 34 100.0 42 TTAAACTTTG .................................. CATGCGTGAGCTGTTCGAGTTGGCTTATCAACTGACTCATAG 3301006 34 100.0 TGACTCATAG .................................. CCTACCCTTT ========== ====== ====== ====== ========== ================================== 8 34 37 TTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.82%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [65,290] Score: 0.18/0.18 # # Final direction: F [5.55,0.18 Confidence: HIGH] >NC_019676 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 3312106 35 100.0 37 AAAGGGTAGG ................................... GAGCAATTGTGACCTGGGAGGTCACGGGTAAGCCCGT 3312178 35 100.0 41 GTAAGCCCGT ................................... CTCAGGATTTCAGCTTTCTCCGCATTACACGCGCAGAAAGT 3312254 35 100.0 36 CGCAGAAAGT ................................... TATTCAGGTCTGCCGGGTGGCTCCTGAAATTTTTTC 3312325 35 100.0 36 AAATTTTTTC ................................... TCTCATTTGCATCTGGTGGGAATGAATGCACCGAAA 3312396 35 100.0 40 TGCACCGAAA ................................... TTGACAACACCTTGTCCCCAAGGGGGGAAGAGGTTCTATG 3312471 35 100.0 41 AGGTTCTATG ................................... AATAGTGATGGGGGTAAATGCCTCCGCCCTGGCCTCCAATA 3312547 35 100.0 37 GCCTCCAATA ................................... TCTCTTGTGTTAGTGGGTTGGCTTAAGTTGTAACCAA 3312619 35 100.0 42 TTGTAACCAA ................................... TTGTCGTCTGCGTTAGCAGGTACTAAAACAGTTTCTAAACCA 3312696 35 100.0 39 TTCTAAACCA ................................... TGGAGATCGACTTGTACTGCGGTACCTGTCTGAGTCCGG 3312770 35 100.0 35 CTGAGTCCGG ................................... TCTATAGTTTCATCAAACTCACAACACAGTATTTT 3312840 35 100.0 39 ACAGTATTTT ................................... ACTTGAGGCGGGGGATGCACCTCCCCCTCCTACACATTT 3312914 35 100.0 CTACACATTT ................................... TTTTTGGATG ========== ====== ====== ====== ========== =================================== 12 35 38 GTTTTCAATTCATTACCCCTCACGGGGATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.29%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [338,1153] Score: 0.18/0.18 # # Final direction: R [0,5.32 Confidence: HIGH] >NC_019676 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3230314 37 100.0 34 CATCGGCAGC ..................................... CAAATTTATCTTTGTGTTTGCCGCCTATGATTTT 3230385 37 100.0 35 CTATGATTTT ..................................... TTTCTTCCCGCCAACGCTGTCACCTGACTCTAAAA 3230457 37 100.0 40 GACTCTAAAA ..................................... TTAATATGTCCACAATCCGCCAAGTTTTAGATGAGGGCGA 3230534 37 100.0 35 ATGAGGGCGA ..................................... ATTGTTTACTGATGTCCACATATTTAAGCTTATGA 3230606 37 100.0 33 AAGCTTATGA ..................................... TTGCGAGTGCCGCGTATTTTAATGGCTCCATCT 3230676 37 100.0 35 GGCTCCATCT ..................................... TGTATATGTAATAGCAGTAAATAACGGTCAACCCA 3230748 37 100.0 42 GGTCAACCCA ..................................... GGGTAATTTGTCTGAGTCAGTATGACAAAATCGCTGCTTGGG 3230827 37 100.0 37 GCTGCTTGGG ..................................... TTATCAGGAGTAAAACGGCGGACAATTTTAAATTGAA 3230901 37 100.0 TTAAATTGAA ..................................... TGTGGGAGCC ========== ====== ====== ====== ========== ===================================== 9 37 36 GTTTCAATCCCTAATAGGGATTAAGTGAAATTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.30,-7.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [508,424] Score: 0/0.18 # # Final direction: R [0,4.5 Confidence: HIGH] >NC_019676 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================================== ====== 3446755 38 100.0 37 GGCTCCCGCC ...................................... CTTTTTTACCGTTGTACTCAGTTGTGTGAACTGCAAA 3446830 38 100.0 34 GAACTGCAAA ...................................... ATCAAATCAGTTAAAGACCCTTACTGGGATGAAA 3446902 38 100.0 41 TGGGATGAAA ...................................... TCCAGTTCGACAAGTCGGGAACTCGTGCGGGTAGTCGGTCA 3446981 38 100.0 38 TAGTCGGTCA ...................................... TCCAAGTTCAGGAAGCGTGGAAGGGCAAATTCCCGTTT 3447057 38 100.0 33 ATTCCCGTTT ...................................... TGGCCGTCCTTCAAAATATGGTGAGCCTTCAAA 3447128 38 100.0 34 AGCCTTCAAA ...................................... GTAGTCGCCTGATTGGGGGCGGATTGCCGGATAA 3447200 38 100.0 TGCCGGATAA ...................................... GAACCTACCC ========== ====== ====== ====== ========== ====================================== 7 38 36 AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.42%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.30,-7.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [50.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [360,2044] Score: 0.18/0.18 # # Final direction: F [4.5,0.45 Confidence: HIGH] >NC_019676 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================================== ====== 3447434 38 100.0 33 TGTTTATCGC ...................................... AAGAAGCGCTCGACGTGATGAGGTAGTAGACAA 3447505 38 100.0 32 TAGTAGACAA ...................................... AGCGCAATCGAAAAACTCTATTAAGGTGTAAT 3447575 38 100.0 34 AAGGTGTAAT ...................................... TTGCTGCCTGGATTTGTCACGAGAAGTTTTAGCA 3447647 38 100.0 36 AGTTTTAGCA ...................................... AGAAGTAATCCGCCGTGGTCGAGGTTTAAAGCTTCA 3447721 38 100.0 37 TAAAGCTTCA ...................................... CTTTGATGCCTTGGCTATTGGCACTCAAGCGGTGAAA 3447796 38 100.0 33 AGCGGTGAAA ...................................... GACACTAAAGTTGCCAACAATAAAGAGTTTATC 3447867 38 100.0 39 AGAGTTTATC ...................................... ACTTCACACTGCCACCCATGTTTTTTTGTTGTGCCATAG 3447944 38 100.0 35 TGTGCCATAG ...................................... ACTATCGACTATTTCATACATTAAATAATTTTTGA 3448017 38 100.0 34 TAATTTTTGA ...................................... ATTTTCTACTATTAAGCCTGAGCCTTTAACTCAA 3448089 38 100.0 33 TTTAACTCAA ...................................... AGCTTCTGGCATCACAGCTTTAAATGCTCAGAT 3448160 38 100.0 ATGCTCAGAT ...................................... ATTAGCTATT ========== ====== ====== ====== ========== ====================================== 11 38 34 AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.42%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.30,-7.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [1039,1084] Score: 0/0.18 # # Final direction: F [4.5,0 Confidence: HIGH] >NC_019676 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================================= ====== 3449280 41 100.0 32 TAAGCTTTGC ......................................... CGCCTAGCCCTGCAAGGTTAATTGCGGCGATT 3449353 41 100.0 30 TGCGGCGATT ......................................... AGCTAATTTGTTCCCTGAGTTGTGCGCTGG 3449424 41 95.1 TGTGCGCTGG ..C.........T............................ TTATTTTACAT ========== ====== ====== ====== ========== ========================================= 3 41 31 AAAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAACA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.73%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.20,-7.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1298,121] Score: 0.18/0.18 # # Final direction: F [5.46,0.27 Confidence: HIGH] >NC_019676 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3760844 36 100.0 34 CCCACAGAAT .................................... AGGTGCAAAATGCCACTGGGGAAGCTAACGTTCG 3760914 36 97.2 40 CTAACGTTCG ....T............................... CTACTCTGTTAGACAGTGAAAATGACTACGGACTTACATA 3760990 36 100.0 35 GACTTACATA .................................... AACATCTTAAAAAATGAACAATTATTAACAATTGT 3761061 36 97.2 37 TAACAATTGT ...................................T AGTTATTGCCGCCCTTTCAGAAATGGGCGCAACTTAT 3761134 36 100.0 35 CGCAACTTAT .................................... TTGACAAGTGTACGGTAAATCAAGCTGGCGGTACA 3761205 36 100.0 36 TGGCGGTACA .................................... CGCTGTAATGACCGGATCATCTGAAAACGAGGTAGG 3761277 36 100.0 37 ACGAGGTAGG .................................... TTGTAATTCTTTTTACCGCCAATATCATGGCGGTACA 3761350 36 100.0 35 TGGCGGTACA .................................... TAGAATTTAGGCTAGGGTATGTATCCTACGGGAGC 3761421 36 100.0 CTACGGGAGC .................................... TCTTCGCTCA ========== ====== ====== ====== ========== ==================================== 9 36 36 GTTTCCATCCCCTTGCGGGGGAAGTGGTTTGGATAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,11] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-9.00,-7.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [45.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [187,619] Score: 0.18/0.18 # # Final direction: R [0.37,1.23 Confidence: MEDIUM] >NC_019676 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 4291641 35 100.0 36 CCTAAGCGGT ................................... CGTATGAAGTTCATCTGCCACAAACAGACGAACAGA 4291712 35 97.1 37 GACGAACAGA ....T.............................. TCAAAATACACCAAAGTGTTTTCCCTGGCGGTTTAGC 4291784 35 100.0 39 GCGGTTTAGC ................................... GTTTTAGATTCAGAACGGGTTAGAGAAATCAATGCTCGT 4291858 35 100.0 39 CAATGCTCGT ................................... GAACATTCTCAACAACATGTTGTTGAAGCAGTTGATACT 4291932 35 100.0 38 AGTTGATACT ................................... GGTTATGCTGATAAAATGTCCACGAACTTTAACACCGC 4292005 35 100.0 38 TTAACACCGC ................................... TATTGCGTTTCCGAAGTGGAGATAGACAAAAAATTACC 4292078 35 100.0 38 AAAAATTACC ................................... TCCATGTCGCTTTCTTTTGTGACAATAAGAGGATAATG 4292151 35 100.0 38 GAGGATAATG ................................... TTGGGTGAAAGCTCAACTGGCTCGTCTAATACTCTACC 4292224 35 100.0 39 ATACTCTACC ................................... CCTCGCGGAAGCCCCCGCGCTTCCCGAAGAAGTTCCAGT 4292298 35 100.0 39 AAGTTCCAGT ................................... GAAGTAGTTGATAGCAGTAAATTACTATCAGGGCATATT 4292372 35 100.0 39 AGGGCATATT ................................... GCTTCACTTCGTATTCTGGAGCAGTTTGAGGAGGCGCTA 4292446 35 100.0 36 GGAGGCGCTA ................................... AGAATACTCACTTCAACTAAATATTCCTCAAGAAAA 4292517 35 100.0 37 CTCAAGAAAA ................................... AATTCGGAAAAGTGGGGTCAACATTGATCCTCAGCAC 4292589 35 100.0 42 TCCTCAGCAC ................................... CCGGTGTTGCTGCCCAGACCACACCCCCTCCCAGGGGGGAGC 4292666 35 100.0 AGGGGGGAGC ................................... CCTACTCTT ========== ====== ====== ====== ========== =================================== 15 35 38 GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:57.14%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [283,473] Score: 0/0.18 # # Final direction: F [4.87,0.41 Confidence: HIGH] >NC_019676 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 4563956 37 100.0 32 NNNNNNNNNN ..................................... AGAATTTAAATCGCCGCTACCATTAGCAAAAG 4564025 37 100.0 37 NNNNNNNNNN ..................................... ATGCAGAAGTAGGAAACAGAATTGTTTTACCTAATAA 4564099 37 100.0 34 NNNNNNNNNN ..................................... TATTAACAGTAATAATATTAAAACTAGTTTTAGC 4564170 37 100.0 39 NNNNNNNNNN ..................................... TTACTAACGCTGGCTCAAGTATTTGTTTGAGCCTTTGAT 4564246 37 100.0 37 NNNNNNNNNN ..................................... CTCAACCTTGATTTGCACTAAAGCACCCCATCTTTCT 4564320 37 100.0 41 NNNNNNNNNN ..................................... GTAGCAGCCCAACAAGGATTGAAGCAAACAAAACAAATTAC 4564398 37 100.0 34 NNNNNNNNNN ..................................... GAGGGCAAAGTCACCAAACCGAACGGTGGTGAAA 4564469 37 100.0 38 NNNNNNNNNN ..................................... TTAAAGTCTCTACTGAAGCATACTTTTCTGGCGTAAAA 4564544 37 100.0 36 NNNNNNNNNN ..................................... AGCAAAGCCTTTCCCAGCTAACTTGCATCAAATTAG 4564617 37 100.0 34 NNNNNNNNNN ..................................... TTGGAACATCGCCGTATTAAACCCAACCCAGCTA 4564688 37 100.0 33 NNNNNNNNNN ..................................... TGTTGCAGAGATGAATAACAAATTCTCTGCCAG 4564758 37 100.0 39 NNNNNNNNNN ..................................... TATGCCCTTTGAGGATTTCATTTTTTTCATCAATAACTA 4564834 37 100.0 35 NNNNNNNNNN ..................................... ATCGGATCTACTTATCAGCAAAAGCAGCAAAATAA 4564906 37 100.0 37 NNNNNNNNNN ..................................... TGTTGGTTTAGCTGCGGTGTAGCCTCCGCGGTCGCCA 4564980 37 100.0 38 NNNNNNNNNN ..................................... ATAGATGCAAGGCCTATCAGGAGGCTAACTCTAGTAGA 4565055 37 100.0 36 NNNNNNNNNN ..................................... TTCGGATAGCACAGCATTGCAGTTCATAAGTACCAA 4565128 37 100.0 36 NNNNNNNNNN ..................................... TGCTGCATCGCTGGGCATTGTATTTATAATAAACTT 4565201 37 100.0 35 NNNNNNNNNN ..................................... TACCAGTACATGAGCGTCCCCGGTGGATTGAGAAA 4565273 37 100.0 34 NNNNNNNNNN ..................................... GAGAATATCGACCATTGCCCGACCAGTCAAAATG 4565344 37 100.0 36 NNNNNNNNNN ..................................... TTTCCTGAGCCGCACCTAAGCGGCTTTTTATTTGAT 4565417 37 100.0 34 NNNNNNNNNN ..................................... GCTTACCTGTAAAAGTAAAATATTTAGGACAAGC 4565488 37 100.0 34 NNNNNNNNNN ..................................... TACCGTAAACAATATACCATAGCGTGCAACACAA 4565559 37 100.0 34 NNNNNNNNNN ..................................... TTTTCACCTTGAAAATAAGACACTTTTGCAGCAT 4565630 37 100.0 35 NNNNNNNNNN ..................................... ATCTCCAGTTTGCCAGCCCTTACGTCCAATTAACC 4565702 37 100.0 34 NNNNNNNNNN ..................................... AGATACTATCATATCTAACTCTTTAGACGTTAAG 4565773 37 100.0 34 NNNNNNNNNN ..................................... GGTTAGTTTCAGCATCTTCCTTGCTTACTAAGTC 4565844 37 100.0 34 NNNNNNNNNN ..................................... AATTACGGATACGAGCGTATTCGCAAATTAGAGA 4565915 37 100.0 36 NNNNNNNNNN ..................................... ATTGACCAAGCAAACAGGCGATCGCCACCTCAATAT 4565988 37 100.0 38 NNNNNNNNNN ..................................... TAGTCATTTGTTTGTAGTTTGCAAGTATTTTGATAGTG 4566063 37 100.0 38 NNNNNNNNNN ..................................... GAGGCTGGTTGTGCTGGAGAAAGTAAACTTGTCCAGTT 4566138 37 100.0 35 NNNNNNNNNN ..................................... ATTTCATATTTAGTAATGCCTCCAGTATCTACTCT 4566210 37 100.0 34 NNNNNNNNNN ..................................... TTGATTTGCGATCGCATTCACAAGTGGCCTGCAT 4566281 37 100.0 40 NNNNNNNNNN ..................................... AAATTTATAATCTTCATAGGCTTTGAGAGCTTTAATCGTT 4566358 37 100.0 35 NNNNNNNNNN ..................................... CTCAATTTCTGCTTGTCTTTTGACAGACAAGCCTG 4566430 37 100.0 34 NNNNNNNNNN ..................................... AGCTATAAATATCGCGTATGACATAGACGCTGAA 4566501 37 100.0 36 NNNNNNNNNN ..................................... ATAAACAGGTACTTATAAAGCTTTCCGATGATTAAA 4566574 37 100.0 39 NNNNNNNNNN ..................................... TCTTTGAAGTACAAGACACTAAAGGAGGTTTTTTCTAAG 4566650 37 100.0 42 NNNNNNNNNN ..................................... AAAAATTAATATCGTATCTAAATATTCGTTTTGTGGTAGGTA 4566729 37 100.0 37 NNNNNNNNNN ..................................... ACGCATGGGAATCATGCCATCGGGGAATAGTTCTAAG 4566803 37 100.0 34 NNNNNNNNNN ..................................... AATGCGAATTATGAAGACTATCACGAACTCAGAC 4566874 37 100.0 40 NNNNNNNNNN ..................................... TTTCTAATGATGAATTTTCTAAATTGCGTAAACACATTAA 4566951 37 100.0 39 NNNNNNNNNN ..................................... CGGTATATACAGTGTCGCCAACCTTGCATTGAAACTGGT 4567027 37 100.0 1 NNNNNNNNNN ................................C..TA NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 43 37 36 ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.30,-7.30] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [45.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [250,298] Score: 0/0.18 # # Final direction: F [4.91,0.27 Confidence: HIGH] >NC_019676 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================================== ====== 5766301 38 100.0 39 CCATCGATGA ...................................... TTCAATATCAACTCGACGTATTCAAGATGTGAAGCATTG 5766378 38 97.4 35 TGAAGCATTG .....................................A GCCTTTAGATGCAAACTTAGCTAGAGAAATTAAGA 5766451 38 100.0 34 GAAATTAAGA ...................................... AGGGAAAGAGTTTCCAGTTCCACAGCACTTACTC 5766523 38 100.0 38 GCACTTACTC ...................................... TTTAAAAATTTAGCCAATGAATCAAAAGGTGAAACTAT 5766599 38 100.0 35 GTGAAACTAT ...................................... GTTTTTGAGTTTATTTGGTTGAATCTTCCTGAAAA 5766672 38 100.0 35 TTCCTGAAAA ...................................... ACTTGCTAACTGCTGCGCTTCATCTAAGCTGATTT 5766745 38 100.0 38 AAGCTGATTT ...................................... TACAGCAGAAATCAAAGAGTGTGTTTTTTGGGATCAAG 5766821 38 100.0 38 TGGGATCAAG ...................................... AGGCGATCGCTTCTAGTTCATGCGTCTCTTTGAGTTTT 5766897 38 100.0 TTTGAGTTTT ...................................... CGCTCGGATT ========== ====== ====== ====== ========== ====================================== 9 38 36 GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:71.05%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.30,-7.30] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [56.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [134,1413] Score: 0.18/0.18 # # Final direction: R [0,5.36 Confidence: HIGH] >NC_019676 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 5568105 37 100.0 47 TAGTAGTTTC ..................................... CTGGATAAATCCAGGACAGAAGGTTGCTACTCCATAAGAAATCACGG 5568189 37 100.0 43 GAAATCACGG ..................................... TTTAAACCCCCGCAGTCGCCCCCAATCCCCCTACCCCCAAAAC 5568269 37 100.0 36 CCCCCAAAAC ..................................... TTAACCATTTCTGTGAAGCTGAATAACATGATGAAG 5568342 37 100.0 32 CATGATGAAG ..................................... CAATCGCTCAAGTATACATCCGCACTCTAGGG 5568411 37 100.0 33 CACTCTAGGG ..................................... AAAAATTCCCGTACCCCGTGGCACTATTTTAAA 5568481 37 100.0 43 CTATTTTAAA ..................................... CTAAAAGGCCATCGTCACATTTCCCACGCTGTAGCCGTTGTTG 5568561 37 100.0 GCCGTTGTTG ..................................... GATGGTGTAGC ========== ====== ====== ====== ========== ===================================== 7 37 39 GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.30,-7.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [68.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2024,72] Score: 0.18/0.18 # # Final direction: F [4.95,0 Confidence: HIGH] >NC_019676 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 5566325 37 100.0 34 GCCTCCCGCA ..................................... GCATAAATGGATTATGTGAAAACTGCTCAGATGC 5566396 37 100.0 33 GCTCAGATGC ..................................... ACGACCCGCTACACCATTACGCCCATCTGTACC 5566466 37 100.0 37 CATCTGTACC ..................................... CGTAAATAGTTTTACTTATCGCATATTTAACGTAAAG 5566540 37 100.0 35 TAACGTAAAG ..................................... CATATCTAGTTACGGTGTACTTTTCTACCCAGTGT 5566612 37 100.0 41 TACCCAGTGT ..................................... GTTCTAGTAAGTCCTTGCCCTTGCCGTAGCGTTGCCCGGTA 5566690 37 100.0 33 TTGCCCGGTA ..................................... GGCGAAGCCATCGCGGTTCTACGCGCCAGAATT 5566760 37 100.0 40 CGCCAGAATT ..................................... TATTTAGGAGTTAGTGTACCCTTCAGCAAGTACTATGATA 5566837 37 100.0 42 TACTATGATA ..................................... GTCTGTGGCGTAATTGATATAGTATTTTCAGTAATGCCCAGC 5566916 37 100.0 36 AATGCCCAGC ..................................... CTTAGGACTACACTGGATACAGAAAGCAAAAAGGCG 5566989 37 100.0 37 CAAAAAGGCG ..................................... ATTCCAGACTGGGCTTGTATGGCTTTTGATCCAGTTT 5567063 37 100.0 40 GATCCAGTTT ..................................... TGATGACTACACCGCTACGAACCGCATTTTAATTTATGAG 5567140 37 100.0 38 AATTTATGAG ..................................... TTGCTAATACTGTTACGTCAGCACTAGAGATGTTTAAA 5567215 37 100.0 40 GATGTTTAAA ..................................... AAATGTCACTTCTTCTATGTATTTAATAAGCTCTTTCTTG 5567292 37 100.0 37 CTCTTTCTTG ..................................... AGCGTGATAACTTATCATTGTGTGTCGTAACTGATAT 5567366 37 100.0 33 TAACTGATAT ..................................... GCTCGCCTAAAGCCTTCACAGGTACCTATTGCT 5567436 37 100.0 34 ACCTATTGCT ..................................... CCATTCCATTGTTCGATTTCCATATAAGGGCGTT 5567507 37 100.0 33 TAAGGGCGTT ..................................... AGCAAGTTTACAGGCTCTTTGCCATACTCTGAG 5567577 37 100.0 37 ATACTCTGAG ..................................... TGAATTCCCTCATCAAAAGCAGTCTATATTTTGTGAA 5567651 37 100.0 39 ATTTTGTGAA ..................................... TGATGCGATCGCCTCGGCATTTATGTATTGAATGATTTG 5567727 37 100.0 43 GAATGATTTG ..................................... AGAGGATACGTCTACAAAGGTGTTGTCACTGAACTAGCCGAAC 5567807 37 100.0 35 CTAGCCGAAC ..................................... GGCGACACACTAAAAGCGAAAGTAGAGGAACTACT 5567879 37 100.0 42 AGGAACTACT ..................................... GAAGCAGGGTTAAAAAGGCGGCGACTGGCTGAGGCTGATTTA 5567958 37 100.0 35 GGCTGATTTA ..................................... CCTTTAAAGTTTCTGCCATTAATCTTTTGATTAAT 5568030 37 100.0 TTTGATTAAT ..................................... TAATAAGTTA ========== ====== ====== ====== ========== ===================================== 24 37 37 GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.30,-7.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [244,603] Score: 0.18/0.18 # # Final direction: F [4.5,0.45 Confidence: HIGH] >NC_019676 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================================== ====== 5767040 38 100.0 33 TTTGCTTTTC ...................................... TATCTCCGGTTGACTGCGCTTGGAGGGTACGAT 5767111 38 100.0 34 AGGGTACGAT ...................................... TTGGCAACCCCTTGCCGCTATTTGCTCTCACCGA 5767183 38 100.0 39 CTCTCACCGA ...................................... TACCTCATATTCACCAAAATCAAATTCACTAGCACCAAA 5767260 38 100.0 36 TAGCACCAAA ...................................... TTGAGCGATAGCAACAAAGCGATCGTTAATACTTTT 5767334 38 100.0 38 TAATACTTTT ...................................... CTTTGGTATTCCGGCTACCGCTCTCATTTTCAAAATTC 5767410 38 100.0 35 TTCAAAATTC ...................................... CCGTCTGTAGCGGTGCTGCCAATGTTGCTCCAGAA 5767483 38 100.0 34 TGCTCCAGAA ...................................... CTTATTGCAAAGAAGTTGATGCCGTCCCTTCTGG 5767555 38 100.0 36 TCCCTTCTGG ...................................... ATTGATTCTCTTTGTGTCCGCAAAGGAATTACAGCA 5767629 38 100.0 36 AATTACAGCA ...................................... CACATCAGATATTGATTTCGCCAATTTGTGATTACG 5767703 38 100.0 35 TGTGATTACG ...................................... TCCCACCAAATTATCTCCACCCGGCGTTGCAAAAC 5767776 38 100.0 35 GTTGCAAAAC ...................................... TGATTTGTGAAGCGGCAGAAAAAATGATGCGAGAA 5767849 38 100.0 34 GATGCGAGAA ...................................... TTTAATGTTATCAATTCGAGCAGAGTATACAGCA 5767921 38 100.0 36 GTATACAGCA ...................................... CATTTCAGTTGCTGTTAGAGCCAACGTGAAATTTTG 5767995 38 100.0 37 TGAAATTTTG ...................................... GCACAAATTTTTGAAGCTTTGGAAAGTGCTGGTCTAG 5768070 38 100.0 GCTGGTCTAG ...................................... CGCGGGAGCC ========== ====== ====== ====== ========== ====================================== 15 38 35 GTTTCAATCCCTAATAGGGATTATTTGAAATTGCAATT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:71.05%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.30,-7.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [873,240] Score: 0.18/0.18 # # Final direction: R [0.45,4.5 Confidence: HIGH] >NC_019677 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 11071 37 100.0 37 TGCGAGTAAA ..................................... GTTATGCGCTGATTCTGCGTGGTTCACGGATAGTTAC 11145 37 100.0 37 GGATAGTTAC ..................................... AGAAGGCGAATATAGTGCATACCGAGATCCTGGCTAT 11219 37 100.0 34 TCCTGGCTAT ..................................... GACAAACTCAGTCTCAAGCTGATCAGATGATATT 11290 37 100.0 34 AGATGATATT ..................................... CCTCAGTGTATGCAGCAATCATCTGTTGTTTGAC 11361 37 100.0 33 GTTGTTTGAC ..................................... AATTAGAGGTTAAGTATGAAACTTGTACTCTTG 11431 37 100.0 34 TGTACTCTTG ..................................... CAGTATCAGCAAGTATTTCTGCCCTCTGTAAGTC 11502 37 100.0 34 TCTGTAAGTC ..................................... GCTCGCGCACCTAGCCCAATTGCTTGCTGATAGG 11573 37 100.0 36 TGCTGATAGG ..................................... TGAGGAGAGATTACTTGCAGCGCACGCCGACTTGTT 11646 37 100.0 36 CCGACTTGTT ..................................... TCCATAACTGTGATGCCCGGTGGGATTATGCACCAC 11719 37 100.0 34 TATGCACCAC ..................................... CAGTATCAGCAAGTATTTCTGCCCTCTGTAAGTC 11790 37 100.0 32 TCTGTAAGTC ..................................... TAAGCTCATTCCAGGTGATTTGCCCTTGAGCT 11859 37 100.0 35 CCCTTGAGCT ..................................... CTCGTGAGTTTCTTCATGCTTTAAAACAATCTCTC 11931 37 100.0 35 ACAATCTCTC ..................................... TTGGCAGCGATGAAGAATCATACGTGTCACAATAT 12003 37 100.0 32 GTCACAATAT ..................................... TTTTCATCGTTCTCATCAAGCTTATTAGTTTG 12072 37 100.0 39 TATTAGTTTG ..................................... TCCCCCTTAAGTATTATCACATGGTTAACCTAGTATGTC 12148 37 100.0 35 CTAGTATGTC ..................................... CAGTCAAGGCTCAAGGCATCGATAAAAGCAGCCCT 12220 37 100.0 35 AAGCAGCCCT ..................................... ATGGGGGCAACTGTAGCGGCTAGAGCTAGCATTAA 12292 37 100.0 36 CTAGCATTAA ..................................... TACATTCTCCCAGTAGCGATCGCCAGTAGCAAGGTC 12365 37 100.0 36 TAGCAAGGTC ..................................... ACCAATAAGGTGTCCATCAAGAATATCTTTCTCTTG 12438 37 100.0 37 CTTTCTCTTG ..................................... CCCGCTATAGCCATCTTTGGGGTTGCCGATCAGCTTG 12512 37 100.0 37 GATCAGCTTG ..................................... TAGACTTCATCCTCTTGAGTACCGTTCAGTCTTGCCA 12586 37 100.0 33 AGTCTTGCCA ..................................... AACGATATTGATAAAGTACGATGCCTCTATAAA 12656 37 100.0 33 CCTCTATAAA ..................................... AAATCATGGTTGATAATCTGCAAAGCATAAGCT 12726 37 100.0 35 AGCATAAGCT ..................................... AAAACTAGGTAGTTCAGTTTCCACTACCCACCACA 12798 37 100.0 33 ACCCACCACA ..................................... AAAGCAGGGGAAAACGGCGCAAAGGGTAGCTTT 12868 37 100.0 36 GGGTAGCTTT ..................................... CTACCAAAGTAAGGTGTATACTCACTATAGCATTCG 12941 37 100.0 38 ATAGCATTCG ..................................... CGAAAGCAGTAGAAAAACCCTACATTTAATAGGTTATA 13016 37 100.0 34 ATAGGTTATA ..................................... TATGATAGCTAGCTAGTATCTTTATAAATAAATT 13087 37 100.0 35 TAAATAAATT ..................................... ATACTTGGATAGAAGCAATTAGAAATATGAATACT 13159 37 100.0 36 TATGAATACT ..................................... AAGCAATACTTTTGCTACTTCTTCGCAGAATTTTTC 13232 37 100.0 34 AGAATTTTTC ..................................... GTACAGCCTGGGCGATCGCATTAGGATCTCCAGC 13303 37 100.0 36 GATCTCCAGC ..................................... CAAGAACAAGTCGATGCAGAACTAGCCGCATATGCC 13376 37 100.0 34 CGCATATGCC ..................................... GGTAGTCAAATAAATCCGGTCTACATCATCCCAA 13447 37 100.0 33 ATCATCCCAA ..................................... TAGGGGAGTTTATAAATATTGCAAACCCACTAT 13517 37 100.0 38 AACCCACTAT ..................................... CGCACCACCAAAGGCACAACCAGAACCAAAGCCACAAA 13592 37 100.0 34 AAGCCACAAA ..................................... ACACGGCGATTGCTCTCAGCATCACCACTGCCGT 13663 37 100.0 CCACTGCCGT ..................................... CGCGGCAGGC ========== ====== ====== ====== ========== ===================================== 37 37 35 GTTTCAATCCCTAATAGGGATTAAGGTTAATTGCAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.30,-7.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [377,419] Score: 0/0.18 # # Final direction: R [0.27,4.5 Confidence: HIGH] >NC_019676 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 5817107 37 100.0 35 GGCTTCAGCA ..................................... ACATGAACCAAGCGGACTACCACAGGGGGCAACAA 5817179 37 100.0 40 GGGGCAACAA ..................................... TTTATTCTGAAATTATATTTAACTTTAGCCATCAGATTCT 5817256 37 100.0 41 ATCAGATTCT ..................................... ACCCAACGGGGTTCCTTCAGAACTAACAAAACAACGCGGAG 5817334 37 100.0 38 CAACGCGGAG ..................................... AAAAATATAAGAATCAGCAATGGTAGGAAAACCAAGCC 5817409 37 100.0 37 AAACCAAGCC ..................................... TCGTTTAGCAAGAGTTATTGATGATGAGACTCAGGAG 5817483 37 100.0 33 GACTCAGGAG ..................................... CATGTGTATGTCCGTGCAGGTGAATGCTCTTGC 5817553 37 100.0 34 ATGCTCTTGC ..................................... ATCAGTTAACAACTGTTCACTGTTTTAGTCGGTA 5817624 37 100.0 35 TTAGTCGGTA ..................................... ACAAATTCTTAAACGGTCGACAGACGCGATCGCCC 5817696 37 100.0 34 GCGATCGCCC ..................................... CAGATTCAAGTGAGCGTGTTACTCAAGTCGCAAA 5817767 37 100.0 34 AAGTCGCAAA ..................................... TTCCGCTAATGAGTTGAGGCGATCGCCTGAGATA 5817838 37 100.0 36 GCCTGAGATA ..................................... CTTTGGAGCAATGGATTTGGCATAAAGCCGATCATA 5817911 37 100.0 34 GCCGATCATA ..................................... GAGCGTTCAGGTAATAAATATTGGTATTACCGCT 5817982 37 100.0 34 TATTACCGCT ..................................... GAGTGGATAGCGTGGTGTATGAAAACATACAACT 5818053 37 100.0 35 ACATACAACT ..................................... TTTATTAGTATCTATATGAGTGTAGATATCAGCTT 5818125 37 100.0 36 ATATCAGCTT ..................................... ATTCTGATCCTGGGTAAATATACGATTTAACGCAAA 5818198 37 100.0 39 TTAACGCAAA ..................................... TAAAGCTAGAGTGCCAATTTCAGATAACTCTAAATCTAT 5818274 37 100.0 36 CTAAATCTAT ..................................... GAGAAAAGTTGGACTAATTCACCTACATCAACAGCC 5818347 37 100.0 35 ATCAACAGCC ..................................... TGAGTATTTTGCTAACGATACTGCCAAAAATCAGT 5818419 37 100.0 34 AAAAATCAGT ..................................... CAATTAACCGCTTGAACTGTTTTTTGAAGGTTTC 5818490 37 100.0 34 TGAAGGTTTC ..................................... ACACAGCAGAAGTCAATAGAAAAAACATCTGAAA 5818561 37 100.0 ACATCTGAAA ..................................... CACCGCGTGC ========== ====== ====== ====== ========== ===================================== 21 37 35 GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.30,-7.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [58.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [292,70] Score: 0.18/0.18 # # Final direction: F [4.68,0.27 Confidence: HIGH] >NC_019677 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 27800 36 100.0 37 NNNNNNNNNN .................................... AAAATACCTTCAGGTCGATAAGGTAAAAACGATGATT 27873 36 100.0 36 NNNNNNNNNN .................................... AGATAACTTACAAGAGAATTCTTGGACAATAGAAGA 27945 36 100.0 37 NNNNNNNNNN .................................... TTTCCTATCAACAGGATTTTACCTTGATGGATTTCAA 28018 36 100.0 37 NNNNNNNNNN .................................... CTGCTTCTCCAGTCAGGAGGTTTTTAGCAGCCATTGC 28091 36 100.0 35 NNNNNNNNNN .................................... TTTACAATGTTATCCCTGACTCCTTTATCTAACTG 28162 36 100.0 35 NNNNNNNNNN .................................... CAAATATCCCTAGATGTTGCCGAGTGGTTAGCCAA 28233 36 100.0 36 NNNNNNNNNN .................................... TCCTTAAGTCTGTATAAGGTTCATTGCCATATACAA 28305 36 100.0 35 NNNNNNNNNN .................................... GAAAGAGAGTTAAGTAGATGGCTATGCAACTAACA 28376 36 100.0 37 NNNNNNNNNN .................................... CTGATGTTTGCGCGTAAATTTGATTTAGTGTTGTCAA 28449 36 100.0 38 NNNNNNNNNN .................................... GTTAATCAAATCAAAGTGATAGGCGATCGCATATTTTT 28523 36 100.0 40 NNNNNNNNNN .................................... CATCCTGTCAGCATCTTGGAAGGTTGGATCATTGAGCAAA 28599 36 100.0 37 NNNNNNNNNN .................................... AGTTCAATTACAGTATGTGTTCCAGCAGGATTTAAAA 28672 36 100.0 36 NNNNNNNNNN .................................... TCAGGGAAAGTAATCTCGGTTGTTACAGGATCAAAT 28744 36 100.0 38 NNNNNNNNNN .................................... TTTGTTCCTCGTGCGGGTAGTAATGAATGCGTTCACGC 28818 36 100.0 40 NNNNNNNNNN .................................... ATGAATACCCTTCTTCCTTATTACCATCAATAAATTCTTT 28894 36 100.0 37 NNNNNNNNNN .................................... GCAGTTACTCGCATATCTTTTATCTTAGAGGTGCGAT 28967 36 100.0 36 NNNNNNNNNN .................................... CTAGAATCGCCAACCAAAGCCGCTAAACGTTGGCGA 29039 36 100.0 37 NNNNNNNNNN .................................... GTTACTTCTAGAAATAAGTCGCTCATGCAAACTTTGC 29112 36 100.0 33 NNNNNNNNNN .................................... TTAACTGCATTTGCTCAACTTTTTGATCATCGG 29181 36 100.0 42 NNNNNNNNNN .................................... AAAATGAGGGGTAAAAGTATGGATAGAGCAATTCACCCCGAC 29259 36 100.0 41 NNNNNNNNNN .................................... TCCAAAATAATTGTTTCACTTTTGTGCTGCACGCCGTACAC 29336 36 100.0 38 NNNNNNNNNN .................................... TCAATCTTGTCTAGCTGTGCCTGGAGGTTGCCTAGAGC 29410 36 100.0 38 NNNNNNNNNN .................................... TCTATCATTCCATAAACTCCTCAAGGATAGTTAAGATA 29484 36 100.0 39 NNNNNNNNNN .................................... GGTTTCAAGGGTATCCCATCTTTACTAAAGGTATACCCG 29559 36 100.0 36 NNNNNNNNNN .................................... ATTCAGAACTAAGACCGGGGGCTTTGTTTGCCATAC 29631 36 100.0 37 NNNNNNNNNN .................................... TAGCTCAAGGCTGCTACCGTCTAGCTCATCACGATCG 29704 36 100.0 35 NNNNNNNNNN .................................... CTCCTGGCACTACTCCTTATGATGTGTGGCAGCAG 29775 36 100.0 35 NNNNNNNNNN .................................... GCAAATGGGCGCAAAGAGCCTATCCTAATAGCCCC 29846 36 100.0 42 NNNNNNNNNN .................................... ATTGATGTTTTCATTGTTTTTTCTCTAATTTGATTTTGATAA 29924 36 100.0 36 NNNNNNNNNN .................................... ATCATAAATATCCATAGAGCTTTCTCCTTTTAAAAT 29996 36 100.0 37 NNNNNNNNNN .................................... TTATTAGAAATAAATGAATAAGTAATGGTTAATTCAG 30069 36 100.0 40 NNNNNNNNNN .................................... AACAAAACAACCATAAAAAGAATTAAAGTAACATACTGAG 30145 36 100.0 37 NNNNNNNNNN .................................... GCCGTTACCCAATCATCAACAGTTGCTTTAACGATAT 30218 36 100.0 37 NNNNNNNNNN .................................... TTCAGTATTAATGAAGAAAGGAATTTCTAATTGTTCT 30291 36 100.0 38 NNNNNNNNNN .................................... AATGTCACTAGATAGCCACTGTTTTACCTCTCTTTCTG 30365 36 100.0 34 NNNNNNNNNN .................................... TTAGAGTTTGTCATTGACGGAATGCAATACGGGG 30435 36 100.0 36 NNNNNNNNNN .................................... TTGACCGGAAAACATGGGATTACCGTCGCCTAGAAA 30507 36 100.0 38 NNNNNNNNNN .................................... CTCAAAGGAAAAAACCTATGAGCTATAAGATACAGAGC 30581 36 100.0 37 NNNNNNNNNN .................................... TTTACTATTCTCCTGAGATTAAAGGTTATCGCTGGCC 30654 36 100.0 37 NNNNNNNNNN .................................... GTACAGAGGATACACGCACCACGGGAGAAGGACTTTA 30727 36 100.0 37 NNNNNNNNNN .................................... AGAATCTGTGATACTAGAATCTATCTACCAGTGTTAC 30800 36 100.0 36 NNNNNNNNNN .................................... ACATCGGCTGATTCTTTTTGTCGAATCGAGTGTATA 30872 36 100.0 38 NNNNNNNNNN .................................... CAAATCACTAACAAATTCACCCTGGTCAATAAGTTCTA 30946 36 100.0 36 NNNNNNNNNN .................................... CGTTCTCTCAGTGCCGCTAACCAAATGGTTAACTCT 31018 36 100.0 37 NNNNNNNNNN .................................... AGGGGCTATTCTGTTTCTCGGATCAAGCAGCACTACA 31091 36 100.0 36 NNNNNNNNNN .................................... TCTCTACTTAAAACCTCCATCTTTATTTTTTCTACC 31163 36 100.0 34 NNNNNNNNNN .................................... CGACAAAGATTTGAACTTTTAGCATATAATTCCT 31233 36 100.0 40 NNNNNNNNNN .................................... TGGTATTAAGTTTTCAAGGTTTAGATCGCGAGTACAAATC 31309 36 100.0 35 NNNNNNNNNN .................................... TAGATGGTTATCTAAGGCATCAATAATGGCATCAT 31380 36 100.0 40 NNNNNNNNNN .................................... CCATAACATTTGTTTTGCGCCCCTTGAACTTGTTGATAAA 31456 36 100.0 41 NNNNNNNNNN .................................... ATCGCATTAATAACTAACATACAAAAACTCATGCAAAGCTG 31533 36 100.0 39 NNNNNNNNNN .................................... TGGAGGAAGGGCGATCGCATCATCCTAAGCTTCATCCAG 31608 36 100.0 37 NNNNNNNNNN .................................... TCATCAACTAAAGTGTCGGGAACATACCACGAACCAA 31681 36 100.0 37 NNNNNNNNNN .................................... ACTGGTTGCCTTGCTCGTCTCGTCCGTTATCGTCAAT 31754 36 100.0 41 NNNNNNNNNN .................................... TTTCTTCAGTGAAGTTAAACATGACAAACTCCTAGATTAGA 31831 36 100.0 41 NNNNNNNNNN .................................... ATGTTGGGAGATAGACTACAACTTTCCTATGCTTAACTTAA 31908 36 100.0 39 NNNNNNNNNN .................................... TTTATCATGCCCTGTAGCACAAGCCAGAAGCATTTTATG 31983 36 100.0 37 NNNNNNNNNN .................................... CAATGACCAGGTGGCTTTGGGTCATGCCATCATCCTT 32056 36 100.0 39 NNNNNNNNNN .................................... TTTTACTTAGATCAGCTAGGAGAGTTCTCTGCCTAGCTG 32131 36 100.0 38 NNNNNNNNNN .................................... TTTTGACGTTCTAACAATTCTACTTTTGTTACTTGTTT 32205 36 100.0 38 NNNNNNNNNN .................................... AACCATGCGGTGGTGCTGATACTTCGCCCAAAAGTGGC 32279 36 100.0 54 NNNNNNNNNN .................................... TTGAATGACGGAGATTCGTGTTCCCGCTCAATGATTTGGCGCACAAATTTAGCT 32369 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 63 36 37 ATTCCCACTCGCTGGGGATATTAATTGAATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-1.90,-1.80] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [186,309] Score: 0/0.18 # # Final direction: R [0,0.27 Confidence: MEDIUM] >NC_019678 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 289693 36 100.0 35 TCTTCAGATT .................................... CATTGTTGCTAAATGTATTTATAAAATCAACAGAA 289764 36 100.0 36 ATCAACAGAA .................................... CTTATAGTAAAAATAATTGTAGATGGAGTACCAAAA 289836 36 100.0 36 AGTACCAAAA .................................... TATGGTAAAGTGTATGTCCAATGGGATAGGATACTT 289908 36 100.0 36 TAGGATACTT .................................... CAATGCTTTGCGAAATGCTAAACATTAACTTATATG 289980 36 100.0 36 AACTTATATG .................................... CTAAAAGATTAATATTACAATCTTCAAAAATTGATA 290052 36 100.0 35 AAAATTGATA .................................... CTTTGTGACAGCCCTACCGATATGACCTTATACAA 290123 36 100.0 35 CCTTATACAA .................................... CCTTATGCTCCTGAAGGCGTGTTGTTTGTGGATGA 290194 36 100.0 36 TTGTGGATGA .................................... CATCAAAAAGATACGGGAACTTACAGAAAACAAATC 290266 36 100.0 35 AAAACAAATC .................................... CGCTAGCCTCAGCGTAAAACACCTTAATATCCTCG 290337 36 100.0 37 AATATCCTCG .................................... CAAAATAATTAAGAAACAAAAATAATCCATAAAAAAT 290410 36 100.0 34 CATAAAAAAT .................................... CCTACAAGCCAATGCCCATGAGATTCTTCAAAGA 290480 36 100.0 35 TCTTCAAAGA .................................... CTAAGCAAATTCTAAAAGATAAATTTGATTTTTAT 290551 36 100.0 36 TGATTTTTAT .................................... CAATACTAAGTTTGCTATGGCATCTTGCCTTATCAG 290623 36 100.0 36 GCCTTATCAG .................................... CTCTGTAAGGACAGATTTATTACCTTTGCAAGATAA 290695 36 97.2 42 TGCAAGATAA ................................A... CATAATAAGCGCCACCTTCGTATACCTGCCCTTTTTGGGAGA 290773 36 100.0 35 TTTTGGGAGA .................................... CTATCAAAAATATTTCATTTGAAGAACCTTTCAAA 290844 36 100.0 35 ACCTTTCAAA .................................... CGAATAGATTCAACATATAATCCATCCAAAACTTT 290915 36 100.0 37 CCAAAACTTT .................................... CAGATAAGTCTTTTCGATAACATTTTTTCTTACTAAA 290988 36 100.0 TCTTACTAAA .................................... TAATATCATTT ========== ====== ====== ====== ========== ==================================== 19 36 35 GTTGAAATCAACTTAAATCCCTATCAGGGATTGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-6.60,-6.50] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2962,125] Score: 0.18/0.18 # # Final direction: F [5.09,0.27 Confidence: HIGH] >NC_019678 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 4246718 35 100.0 43 TATATTTGCA ................................... TAAAGTGTGTTTCCGGCACCGTTGGGTGCAATGGTGACTTAGG 4246796 35 100.0 39 GTGACTTAGG ................................... GTTTAGTTGGTGGAAGTTATTTTATCCAAAATCTTACTA 4246870 35 100.0 43 AATCTTACTA ................................... CCATTCGCACTAATATTAGAGTAGATGGAAATACTAACGGCAG 4246948 35 100.0 40 CTAACGGCAG ................................... TTTTTGAAAACGCGTCGCAAAGCGACATTGAAAGAGTAAA 4247023 35 100.0 36 AAAGAGTAAA ................................... TACATTTAGCTCTGGGGTTATGATGCCTTACGCTGT 4247094 35 100.0 39 CTTACGCTGT ................................... ATTTTAGCAGAACGCAAGCCGCTCAAAACAGGTCCAAAA 4247168 35 100.0 AGGTCCAAAA ................................... CCTACCTTCTG ========== ====== ====== ====== ========== =================================== 7 35 40 GTTTCCATCCCCTGACGGGGTTAAAGATTAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:57.14%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [168,350] Score: 0.18/0.18 # # Final direction: R [0.27,0.55 Confidence: MEDIUM] >NC_019678 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 5162179 36 97.2 38 TAATGAGAAG .......................C............ AATTATGCGTCACTTTAGATCCTTTGCGTTTTGGAATA 5162253 36 100.0 34 TTTTGGAATA .................................... TGCCCCAAAAGGTCACGATAACATCAGGGTGATA 5162323 36 97.2 33 CAGGGTGATA ...................T................ GTCTTAGAACTTACTCTCTAAAGGATAAGCCGA 5162392 36 100.0 32 GATAAGCCGA .................................... CATCAGGGTGATACGACTAGAGGAACAGCAGA 5162460 36 100.0 34 GAACAGCAGA .................................... GCCTTCTGCTACTGAAAAAGCAGTGACAGCAGCT 5162530 36 100.0 GACAGCAGCT .................................... ATGAGTTCAC ========== ====== ====== ====== ========== ==================================== 6 36 34 GTTTCCATCCCCGCTGAGGGGAGTTGGTTTGGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-9.50,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [659,971] Score: 0/0.18 # # Final direction: R [0.37,0.78 Confidence: MEDIUM] >NC_019678 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 5166963 36 100.0 37 ATATTAGAAA .................................... AAACCCAAAACTTCTTGTAGCTTCAAGAAAAGCCACA 5167036 36 100.0 34 AAAAGCCACA .................................... TAGCGTCCGATGTTGGATTATTCCGGCATTATAT 5167106 36 100.0 33 GGCATTATAT .................................... TGAAGTTCTGGTGTACGAAACAGCAGACGGAAA 5167175 36 100.0 38 CAGACGGAAA .................................... ATATCAAGACGCTATCCAATGGGAAGGCGCATCTATTG 5167249 36 100.0 41 GCATCTATTG .................................... TTCTCAAATGCTAGCTTATTAGATTCTGGAAACTCTAGAAC 5167326 36 100.0 36 ACTCTAGAAC .................................... GCTAAGAAGGAAAAGCCAGTGCCCACCCCCTCACCT 5167398 36 100.0 36 CCCCTCACCT .................................... GTTGCAAAAATGGCAGCCGCAAATTTTGCTGTGATT 5167470 36 100.0 TGCTGTGATT .................................... AGTTCACTTT ========== ====== ====== ====== ========== ==================================== 8 36 36 GTTTCCATCCCCGTTGAGGGGAGTTGGTTTGGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,11] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-9.50,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [588,485] Score: 0/0.18 # # Final direction: F [0.64,0.37 Confidence: LOW] >NC_019678 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 6181145 36 100.0 32 TGAGCGAACT .................................... TTGGGGGAAGTTTGCATATTAACTCGTTACCT 6181213 36 100.0 38 CTCGTTACCT .................................... TTTTACCAATGAAGTTTCCAGTGATAGCAATTATGTTA 6181287 36 100.0 38 AATTATGTTA .................................... TTCATCGTCTCCACCAGTTTCACGTATAACAGAACTTT 6181361 36 100.0 36 ACAGAACTTT .................................... GCTAAGCATGGCACTTAGCCTATAAACTGCTTGATC 6181433 36 100.0 34 CTGCTTGATC .................................... TTGGTTAGACATTTTAGCAATCCTTTAAAAATAA 6181503 36 100.0 37 TTAAAAATAA .................................... GTGTAGTTCGGTAAAAACCTAAAGGTTCTTCACGGTG 6181576 36 100.0 34 CTTCACGGTG .................................... TCTACGAGCAAGCGGTTTGCTGTTGGGGTAGGCA 6181646 36 100.0 34 GGGGTAGGCA .................................... TGCGGGTGTCAACGGTTTCACCACGGACACCATG 6181716 36 100.0 33 GGACACCATG .................................... TTACTTGCTGGTTTAAACAATAAGCTAAGACAA 6181785 36 100.0 37 GCTAAGACAA .................................... TCTCCGTCTGCGTTTTTTGACTTTCCGCAAGCCACAA 6181858 36 100.0 36 CAAGCCACAA .................................... ATTTTTTAGAAACGCAAAAAATTACTTCCTAAAAGC 6181930 36 100.0 38 TCCTAAAAGC .................................... TTTTAGGTTATTTTTGTAATAAACCATAGTAGATCTAG 6182004 36 100.0 32 GTAGATCTAG .................................... TGAAGTAAGTCACAAACTAACAACAAATCGTT 6182072 36 100.0 37 ACAAATCGTT .................................... AATTACTTCTCCACAAGCAAGGGCTTGAGAAGGTTGA 6182145 36 100.0 35 AGAAGGTTGA .................................... TCTGTGATATTCTCTTCTTTCTCTAACCACTTTTA 6182216 36 100.0 40 ACCACTTTTA .................................... AAATGTGCTTTAAATGCAGTTTCAAGCGATTCAAAAGCAT 6182292 36 100.0 35 TCAAAAGCAT .................................... ATTAATTGCTTTTAATTTCACTTGTTGTTTCCTTT 6182363 36 100.0 39 TGTTTCCTTT .................................... CTTGAAGAGAAAGAATAGTTTTTTCTTTTTGTTCAGCTT 6182438 36 100.0 35 TGTTCAGCTT .................................... GTTTGGGCGAGTAAGTGAAACTTTTTTTCCCGCAA 6182509 36 100.0 36 TTTCCCGCAA .................................... ATAAGCTAAGACAATAATTGCGCCTTCGTGTCCCCC 6182581 36 97.2 35 CGTGTCCCCC .....G.............................. TATAAACTGTGTTTTCGTTAAAACCCCCAACAGCA 6182652 36 100.0 34 CCCAACAGCA .................................... AAAAACAGTGTCAGCATTGACTCTACCAGCTTTC 6182722 36 100.0 33 ACCAGCTTTC .................................... TTTACATCTTGAATTATTTTCTTTATTCCTAAT 6182791 36 100.0 32 TATTCCTAAT .................................... TGTGTAGTCATGATGACTTACCTCAATTTAAG 6182859 36 100.0 37 TCAATTTAAG .................................... TTCCATGGTGATGATACCATTACAAGCACGGGCAACA 6182932 36 100.0 38 ACGGGCAACA .................................... TAACAAGGGATTATGCGATTCAGATCGTAAAAAAAATA 6183006 36 100.0 34 AAAAAAAATA .................................... CTGGAACTTTGCGTCCACAGATTAGACCTAGTTC 6183076 36 100.0 35 GACCTAGTTC .................................... CATACATTGTTGCCCGTGCTTGTAATGGTATCATC 6183147 36 100.0 36 TGGTATCATC .................................... GGAAACCCAAATTCCTGCTCACCAAGGGGGGCATGA 6183219 36 100.0 38 GGGGGCATGA .................................... TTTCAAATGACCGAATACGAACAACTTTTGCAGGTGAA 6183293 36 100.0 35 TGCAGGTGAA .................................... CATTCCATTACTGGATTAGCGACAGCAGGGTTCAC 6183364 36 100.0 31 CAGGGTTCAC .................................... CATAGATACGGCATTAAGAGCTATAATTCTT 6183431 36 100.0 35 TATAATTCTT .................................... GATAGAGCAATAAACCCTAAAGCAACACTGACTAT 6183502 36 100.0 33 CACTGACTAT .................................... TTATATATTTTGTAGCGGTTTTAAATTCTGAAG 6183571 36 100.0 37 AATTCTGAAG .................................... TTGGCTACATAACTTTGATTTTCTTCTATGTATTCTT 6183644 36 100.0 37 ATGTATTCTT .................................... GTTAGTAAATTACTTTACAAGAAAAATCTTGTAATTG 6183717 36 100.0 37 CTTGTAATTG .................................... TCTACTTTGTTAGCGAAACCTGTTGCAAACCTAGCAA 6183790 36 100.0 40 AACCTAGCAA .................................... TTTTTCACCAAGCTCTGTTTTCAAAACTTGTTGAACTTTA 6183866 36 100.0 36 TTGAACTTTA .................................... AATGATATGTATCCCAATTGAAGCACGTTTTATTAT 6183938 36 100.0 37 GTTTTATTAT .................................... TTTAAAATATTCACTATGTAAAAAGAAATAAACCTAT 6184011 36 100.0 32 ATAAACCTAT .................................... CACCATTATTTGTTTGAGTGGTAGGGGGATGA 6184079 36 100.0 35 AGGGGGATGA .................................... GCTAGGGCCCGGCTGGGGAGAGGGCTCCCTATTAG 6184150 36 100.0 35 TCCCTATTAG .................................... TTATTACCTTCATGCTTGGAAAAAATTCTAGACAC 6184221 36 100.0 34 TTCTAGACAC .................................... ACTAACCCACACAATGAGGCTGAATGAATTTTTT 6184291 36 100.0 33 TGAATTTTTT .................................... AGCTGTAGCAATCTTTAAGTAAATCTTAGAAAA 6184360 36 100.0 38 TCTTAGAAAA .................................... CATCGGAAACATCTTTATTACCTTCATGCTTGGAAAAA 6184434 36 100.0 38 CTTGGAAAAA .................................... AAGCTTCCAAGAGCGATTTTGAGACTTGCCAGATGCAA 6184508 36 100.0 34 CCAGATGCAA .................................... TCGACTGAAAGCGATTGGGCGAAATTTTTTGCTA 6184578 36 100.0 34 TTTTTTGCTA .................................... CTGAATGGCATGATGGTAGTTACTTTTGTCAATT 6184648 36 100.0 38 TTTGTCAATT .................................... TGTAACAGATCCAAGAGCAGCAAAACAGGCACCAGCAA 6184722 36 100.0 33 GCACCAGCAA .................................... TTTAAAAATTAAAATATTACTTAAAATAATTTT 6184791 36 100.0 38 AAATAATTTT .................................... GATTGGCATCGCACTTGCAATTTTCTCCGTATAGCCTA 6184865 36 100.0 34 GTATAGCCTA .................................... GATATATAACTCCCACGTTCAGATGAACGTCTCT 6184935 36 100.0 38 GAACGTCTCT .................................... TTTGGTTAAAAGAGTCGAAATAAACAAATATTACGTTT 6185009 36 100.0 38 TATTACGTTT .................................... TGGCTATAACTATGGTGGTAAGCCACAGGCAATACGCG 6185083 36 100.0 33 GCAATACGCG .................................... ATTTTTCTCCACAAAATTATAGAAAGAAAAAAT 6185152 36 100.0 37 AAGAAAAAAT .................................... TTGATAAGAGAAAGCAAGAAGTTGCAACAATAGCAAC 6185225 36 100.0 37 CAATAGCAAC .................................... AGTAAGTCCACCAATCTCAAAAACTGTAGTTCCATTT 6185298 36 100.0 36 AGTTCCATTT .................................... AAATATCTCCTAATTTGAGAAATTTCGGTTGCGGTT 6185370 36 100.0 37 GGTTGCGGTT .................................... TTTAATCATTCGACTACTCATTCTAACCCGAACAAAA 6185443 36 100.0 36 CCGAACAAAA .................................... AAACTTTACTAGATTGTGGCATAATTTTACCTACCT 6185515 36 100.0 33 TTACCTACCT .................................... AACTAGGAGAAAAACTTGTTTCAGCAACTAAAA 6185584 36 100.0 36 GCAACTAAAA .................................... TAGCTATTGCGGATTGCAGCAGATAACTTGATAACT 6185656 36 100.0 33 CTTGATAACT .................................... TTAAAGAAGTTGTGTAGCTTGCCCGTATATCAA 6185725 36 100.0 34 CGTATATCAA .................................... AATTATACTAGCTTCTGAACTACCAGACATTTCA 6185795 36 100.0 41 AGACATTTCA .................................... AACTTGATTAACGTCAAATTTGTTAAGAGTTTCTTCAATCC 6185872 36 100.0 36 TCTTCAATCC .................................... ACCTGCACACTTGCCTTTAGTTCTAACATCAGAAGA 6185944 36 100.0 38 CATCAGAAGA .................................... ACTATTAGAACCATTGTGTTTTACAAACACAGTGTCTT 6186018 36 100.0 33 ACAGTGTCTT .................................... TTTAGGAGTTAATCTGATTAGTCTACCAACGTC 6186087 36 100.0 31 TACCAACGTC .................................... GTTAGTGGTTTTTTGCGAACCTGCAAATCCG 6186154 36 100.0 41 TGCAAATCCG .................................... AATGCTGCAACTAACGTTAAAACCACAAATACCAAAAAATA 6186231 36 100.0 33 CCAAAAAATA .................................... GTTCTTCCTCCATCTCGCACTTAGAAGGGTGTG 6186300 36 100.0 37 GAAGGGTGTG .................................... CATCTAAATAAGAATAATACAACTACCACATCTCGCA 6186373 36 100.0 33 ACATCTCGCA .................................... GATTGATCTTCATAGTCAAAATTTTCTTCTTTC 6186442 36 100.0 38 TTCTTCTTTC .................................... TTTAATGTATTCTGCAGCAGAAAGAAAAAACACTCTAT 6186516 36 100.0 35 AACACTCTAT .................................... TCTCACTTCTTGCAATCTTTCAACTGCTTGATTAT 6186587 36 100.0 35 GCTTGATTAT .................................... AATTCATATCAGTAATCGTTTGATTTCTGATATAT 6186658 36 100.0 40 TCTGATATAT .................................... TTTCCAATGCTAGAGTTACCAGAATTATTAAGTTCGGATT 6186734 36 100.0 39 AGTTCGGATT .................................... AAGAAGGGAAACCATGGTTTCCATGTATTTAGCGGAATA 6186809 36 100.0 34 TAGCGGAATA .................................... GCTTCACACTACGTTTCATTTCTAAATCGTATAA 6186879 36 100.0 35 AATCGTATAA .................................... GAGACCTCCGAAGATGCTGTCATTGCCGTTTCCAC 6186950 36 100.0 39 CCGTTTCCAC .................................... CACATCAAATGTGCCGCCTAGCGCAAGTTCCTGCTGCCA 6187025 36 100.0 38 CCTGCTGCCA .................................... GATTGGTTAGTCAATGCACACAACTTAATGAATGCAAT 6187099 36 100.0 33 TGAATGCAAT .................................... ATTCAGATGAATCTACGACTGTGCTTCCTTGAC 6187168 36 100.0 33 CTTCCTTGAC .................................... TTTAGGAAACAAATAACCCCCCAAAAAAAAAGA 6187237 36 100.0 35 AAAAAAAAGA .................................... ACGTATTCTCGGAAATATAGTGACGACCTGCTAAA 6187308 36 100.0 33 ACCTGCTAAA .................................... CTATGATGAGGAAGATCCACAAAGGATAATCTC 6187377 36 100.0 37 GGATAATCTC .................................... ACCTGATCCTCCGTGCAGAAGGTCTTCTTGGAAGCCT 6187450 36 100.0 38 TTGGAAGCCT .................................... CCTTTATCTCATTTGCAAGAAAATTCTGAACATTTGGA 6187524 36 100.0 34 AACATTTGGA .................................... CTACAAAAGTAACCGCAACTAATGTTCCAACAAA 6187594 36 100.0 36 TTCCAACAAA .................................... TTTAAGACCATCTAGGAAGAAATCTGGAACGTATCC 6187666 36 100.0 35 GAACGTATCC .................................... TTTTTATATATGCAGAAAATGCGGGCTCTCCTACA 6187737 36 100.0 35 CTCTCCTACA .................................... TCTCAACTCTTGCAAGCCTTTCATCAAGCTCTTTT 6187808 36 100.0 41 AAGCTCTTTT .................................... TTTTTGATGGTTGAACACTTTTTAGGAACTTCATATTTATA 6187885 36 100.0 35 CATATTTATA .................................... CGTATTCATCAGATACAATGTTAAAATTATCAAGA 6187956 36 100.0 35 ATTATCAAGA .................................... CTTGAGCTTGCGTGTGATCGTTTCCCATCTTCAGT 6188027 36 100.0 38 CATCTTCAGT .................................... TCTGCGGGTGCAGCTGCAAAAAATGTGCCTAAAATCAG 6188101 36 100.0 34 CTAAAATCAG .................................... ATTGTATGTTCATTAGAAACTTTCACGTCTCTGT 6188171 36 100.0 38 ACGTCTCTGT .................................... AGAATTTGATCATGTCTAACCAAAAGAATGTATTCATC 6188245 36 100.0 35 TGTATTCATC .................................... CTACCCAGTAAGGATAAATGCCAACGTTCTTCATC 6188316 36 100.0 GTTCTTCATC .................................... CTTCGTAATC ========== ====== ====== ====== ========== ==================================== 101 36 35 CCCCACCGATTGGGTTAATTCGGATTAGTTGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.80,-2.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [221,565] Score: 0.18/0.18 # # Final direction: R [0.37,0.86 Confidence: MEDIUM] >NC_019678 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 6194395 36 100.0 37 TCGGTTGAAA .................................... TTTGGTATGTTGAATTTAAAAATTCAACAACTCACTA 6194468 36 100.0 38 CAACTCACTA .................................... TTCCGTATTTCCAGGGAATATGGTGGCATATATGTAAC 6194542 36 100.0 33 TATATGTAAC .................................... GCTGTGTAGTATTGTTTAACATATAATGAACTT 6194611 36 94.4 TAATGAACTT ..................................CA AGTAAAGA ========== ====== ====== ====== ========== ==================================== 4 36 36 CCCCACCGATTGGGTTAATTCGGATTAGTTGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.80,-2.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [58.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [238,106] Score: 0.18/0.18 # # Final direction: F [0.96,0.27 Confidence: MEDIUM] >NC_019678 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 6212862 37 97.3 37 CAGAATACAA ...............................T..... TTGCTGTCAATTTCTGACAAATTGCAAAATGTAACTA 6212936 37 100.0 35 AATGTAACTA ..................................... AACCAATCCTCCAAACCAAGATAGTAAAGACTCTT 6213008 37 100.0 37 AAAGACTCTT ..................................... TTAAGTCTTCCTGAAAACTCGAATGCAGACTTAGCAG 6213082 37 100.0 35 GACTTAGCAG ..................................... TCTTTAACTACGCTCACTAAAGAAGTAGACAGCAA 6213154 37 100.0 37 TAGACAGCAA ..................................... AACTCTCAATATAAGATATTGTCATTGAACTAAAAAA 6213228 37 100.0 35 AACTAAAAAA ..................................... CCTTAGCATAATTCTCAAGAGAATCTGCCATTTGA 6213300 37 100.0 TGCCATTTGA ..................................... ACCGTCCCTT ========== ====== ====== ====== ========== ===================================== 7 37 36 GTTTCCAACTAATCCGACTTAATCCAGTCGGCGGAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:51.35%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.50,-9.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [170,261] Score: 0/0.18 # # Final direction: R [0,0.78 Confidence: HIGH] >NC_019678 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 6326180 35 100.0 38 TAAAGTGGAA ................................... CAGTATTGAATCTGCAAGCTAACACAAATACTAATTTA 6326253 35 100.0 36 TACTAATTTA ................................... AGCTAGTTCTCAAGTTTTAGAAGATTTGGAAGAGTT 6326324 35 100.0 37 TGGAAGAGTT ................................... GTATGGTCGAAGGAATAGATACAGTAGATCCTCGTGA 6326396 35 100.0 ATCCTCGTGA ................................... TTAGAAGTTC ========== ====== ====== ====== ========== =================================== 4 35 37 GTTTCCGTCCCCGTGAAGGGGAATTAATTTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:57.14%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-9.50,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [230,118] Score: 0/0.18 # # Final direction: F [0.64,0 Confidence: HIGH] >NC_019678 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 6328998 35 100.0 35 AACCAAGGAG ................................... AAGTTAGAGATTACTTACTTTTTGATCGTATTGGC 6329068 35 100.0 35 TCGTATTGGC ................................... TGAAAACCGCATTGTCGCCAATTGCCGCATTGAAA 6329138 35 100.0 38 CGCATTGAAA ................................... AATTGCAGCATGCAAATAGTGTAGAAGATGTGGGAAAA 6329211 35 100.0 37 TGTGGGAAAA ................................... CATATTTCTACAAAATCCACATCTGTGGTAGGTGATA 6329283 35 100.0 41 GTAGGTGATA ................................... AATAAGCGGAAAATTTTTGGTCCTGCTGAAACTCTTAAAGT 6329359 35 100.0 CTCTTAAAGT ................................... CCTACCATTC ========== ====== ====== ====== ========== =================================== 6 35 37 GTTTCCATCCCCGTAAGGGGTTAAGGAATTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:57.14%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [659,579] Score: 0/0.18 # # Final direction: F [0.37,0 Confidence: MEDIUM] >NC_019678 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 6751356 37 100.0 36 GAACCCAGCA ..................................... ATAACGAGGCAGAACAAGCAAGAAAGCAATTAAAAA 6751429 37 100.0 34 CAATTAAAAA ..................................... ATTGAATTGTAGTGTTGTAATGTTGTATGTAAAT 6751500 37 100.0 34 GTATGTAAAT ..................................... AATCGGGCAATGGCAAATGATTCACAACAATGGG 6751571 37 100.0 38 CAACAATGGG ..................................... ACCTTTAAGAACAGTGAAGTTGCTAAGGACTTGTTTAG 6751646 37 100.0 35 ACTTGTTTAG ..................................... TATGGTACGCTCTTTTTCTTGCTTGGGATTAATAG 6751718 37 100.0 38 GGATTAATAG ..................................... TTAATCTATTTTCTATCTTGCCGCTAGAATGATTAAAA 6751793 37 100.0 35 ATGATTAAAA ..................................... TAATTATCGCGTTAAGGTTAAGGAATTGTTTACAA 6751865 37 100.0 33 TTGTTTACAA ..................................... TATTTAGGATGCTTTACCACGGCATCCTTTTTG 6751935 37 100.0 33 ATCCTTTTTG ..................................... AAGGAAGAGAGTATAGATACAGTTTGCAATCAG 6752005 37 100.0 35 TTGCAATCAG ..................................... AACAAGCCTCAAACCTAGTGATAGCAGTCAATTGT 6752077 37 100.0 36 AGTCAATTGT ..................................... CTTATCCTACAAACATGACTACATTTTCTTCTGCTC 6752150 37 100.0 34 TCTTCTGCTC ..................................... CTATTATGGGAAGGGGGAGGATTTCTATTATCTC 6752221 37 100.0 34 CTATTATCTC ..................................... AATTACATCCTGTATTTGCTCTTTCTTTGAATTA 6752292 37 100.0 35 CTTTGAATTA ..................................... ATCAGTCTTTAATTAGATATAATCATTTAAAACAA 6752364 37 100.0 33 TTTAAAACAA ..................................... ATATTCTTGCTGCAATTTCAGGATGCACTGTAT 6752434 37 100.0 34 TGCACTGTAT ..................................... TTCAATCGCCTTAAAGGAGTCTTTAAACGCTTTA 6752505 37 100.0 33 AAACGCTTTA ..................................... TTTTAACTTCTAGAGAAGCTTTCTCAGATTCTC 6752575 37 100.0 34 TCAGATTCTC ..................................... GATGATTTTAGACATTTGAATAGTTTGAAGAATA 6752646 37 100.0 35 TTGAAGAATA ..................................... GGTACTTTGAAAGTTTGTGAGGAGAATGAAATACT 6752718 37 100.0 35 ATGAAATACT ..................................... GCATCAACCAACTTTCCTTACTGCCATTAGCTGAT 6752790 37 100.0 35 ATTAGCTGAT ..................................... TTATAAGAATTTGTGTAAGCATTATGGAAAAGTAG 6752862 37 100.0 35 GGAAAAGTAG ..................................... CATAACCTCTCAAGATAAACCTCTGAGGAGAAAAA 6752934 37 94.6 AGGAGAAAAA ............................A...A.... TATTGCTTGC ========== ====== ====== ====== ========== ===================================== 23 37 34 GTTGAAACTCACCTTAATCCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.16%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.30,-7.30] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [538,22] Score: 0.18/0.18 # # Final direction: F [5.09,0 Confidence: HIGH] >NC_019678 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 7450340 37 100.0 35 GATGCCCGCA ..................................... CCAAGTCTTAGTAATTACAGCCATTTTGATTTTTT 7450412 37 100.0 34 TTGATTTTTT ..................................... CTACCACGCATGATTGCGGATTTTAACACAGCTT 7450483 37 100.0 35 AACACAGCTT ..................................... AGAAAAATATTTAAGCTATTCGAGGCTGAATTTTC 7450555 37 100.0 33 CTGAATTTTC ..................................... TTATAACCTTTGCTTGTTTGCTCAAGTACTAAA 7450625 37 100.0 35 AAGTACTAAA ..................................... CAGAGCTTTCAACTGCCTGCATAGGTTCAGAAGTT 7450697 37 100.0 34 TTCAGAAGTT ..................................... CAGGATTATTCCCAGGCTTTCTCATAGTCACTAA 7450768 37 100.0 34 TAGTCACTAA ..................................... GAAAAGTCCTGCCCAGTATACTTGGGACAGTATC 7450839 37 100.0 34 GGACAGTATC ..................................... TTAAGATTGAAGCGGTACGCTACTTTGTTACTAA 7450910 37 100.0 35 TTGTTACTAA ..................................... TTAGAACCCGTTGCCGCTTAACCCTCACTCCCAAC 7450982 37 100.0 33 CACTCCCAAC ..................................... ACTCTGATTCTTGCGGGCTCAAAAACTCTTTCC 7451052 37 100.0 34 AACTCTTTCC ..................................... AAATTACTTTTCTACACAGGTGCTAGACCTTCAG 7451123 37 100.0 35 AGACCTTCAG ..................................... GTGGGGTGAGTACTTCTAAAACATTCACCACATCT 7451195 37 100.0 35 CACCACATCT ..................................... TTTTAGCTTTAGATAATGAATCGATGGCTAAAAAG 7451267 37 100.0 34 GGCTAAAAAG ..................................... GTCGCTGCAAATTTCTCTAATCCGGCAACGAATT 7451338 37 100.0 34 GCAACGAATT ..................................... TATTTGTTAGCATCAATATATCACACCTGTAGAT 7451409 37 100.0 35 ACCTGTAGAT ..................................... AAAATTTCTACCTAAAGAGCTATTTGTTGCTATCT 7451481 37 100.0 34 GTTGCTATCT ..................................... CACTTCTTGAGCAAACATTTGGCGATTCACTTTA 7451552 37 100.0 35 ATTCACTTTA ..................................... GTTTCCGCTTCGACTCCCGTACAGCCTCAGCTTCC 7451624 37 97.3 CTCAGCTTCC .........G........................... TTATAATACA ========== ====== ====== ====== ========== ===================================== 19 37 34 GTTGAAATAACCTCTAATCCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.30,-7.30] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [55.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [236,509] Score: 0.18/0.18 # # Final direction: F [4.91,0.45 Confidence: HIGH] >NC_019679 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 21556 36 100.0 35 CACATGAACT .................................... TTCTCTGTCCATCTGGACATTGAGAAAATCTCCAA 21627 36 100.0 32 AAATCTCCAA .................................... CGTATCTCCTGCTAAAGCTGGAATTGCTGAAG 21695 36 100.0 36 ATTGCTGAAG .................................... ATAAATTTTCCCTATTGTCAAGTATTCACTAGGATG 21767 36 100.0 39 CACTAGGATG .................................... AATCCGAAGGAACTCTAACTGTATTTGTTCCAGAAAACG 21842 36 100.0 37 CCAGAAAACG .................................... TAATAATTATTTTGTCTCTTTATCTCTACGTAAGTTC 21915 36 100.0 37 ACGTAAGTTC .................................... TCAATAGTTTCGGTTATTGGTTCAAAAATATATTCGA 21988 36 100.0 35 ATATATTCGA .................................... ATACTATAGCCTTTCTCAGTTTGAAACATTAACAT 22059 36 94.4 ACATTAACAT ..............................T....A TAAAAATAA ========== ====== ====== ====== ========== ==================================== 8 36 35 CTTTACTAACCCCTAATCCCTAATAGGGATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.60,-8.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [48.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [533,102] Score: 0.18/0.18 # # Final direction: R [0.59,0.64 Confidence: LOW] >NC_019680 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1147365 36 100.0 37 GTAATTGCAT .................................... ACCCTGCCGTATCTTTAACTTCAAATATGTATTTAGT 1147438 36 100.0 34 TGTATTTAGT .................................... TTTCCTTTTAATTTTACTTCGGTAAAACAAGAAA 1147508 36 100.0 35 AAACAAGAAA .................................... TCCATTAACGAATTAGAAGCCGAACGCACAAAACT 1147579 36 100.0 36 GCACAAAACT .................................... TACCGCATCAGTTAACAGCATTTGCTTTGTAACTCT 1147651 36 100.0 38 TTGTAACTCT .................................... TTGGGCTTGACATTACCTTGGCGGCCCAACAGATGGGA 1147725 36 100.0 36 ACAGATGGGA .................................... GGAGTGAGACAAGTGAACAACCTAATAGATTGGAAT 1147797 36 100.0 35 AGATTGGAAT .................................... ATTTTTCAATCTAATAGAGCTTTCTTTAACTTTTA 1147868 36 100.0 34 TTAACTTTTA .................................... GTTCGATTATTTCTCCGTTAACTTCTTCTATCTG 1147938 36 100.0 36 CTTCTATCTG .................................... GATCTATCCGTTGCCGTGAAATTAAGAACAGATTTT 1148010 36 100.0 37 AACAGATTTT .................................... TGGGTTTGGAGACAACAAGAGTCACGGGCAAAAAAAG 1148083 36 100.0 36 GCAAAAAAAG .................................... CCAAAGTAAAAATTAGGTCATTGGAAAGCATTGAAG 1148155 36 100.0 35 AGCATTGAAG .................................... GTCAAAGTTGGCACTGATCGTCTCGCATCATTGGC 1148226 36 100.0 36 CATCATTGGC .................................... TCGAGATAGCTTGCAAGTTTTGGGTATCGTTTTCGA 1148298 36 100.0 35 TCGTTTTCGA .................................... CAACTCATGTCTCCGTACCCAGGCGATTTACAGCA 1148369 36 100.0 35 ATTTACAGCA .................................... GCCCCAATCGCCGCAGTTCACCTTGTTCCGAATCG 1148440 36 100.0 35 TTCCGAATCG .................................... TATATCTAAATTGTTTCTAATCTCGTTAATATCCT 1148511 36 100.0 35 TTAATATCCT .................................... TAAAGAAAGCTCTATTAGATTGAAAAATCTTTAAG 1148582 36 100.0 37 AATCTTTAAG .................................... AGGGAATTTACTTTTAGTATATACAATTAACGAAGTA 1148655 36 100.0 39 TAACGAAGTA .................................... CCCTAGCCTGATTACTGTGTGGCCTTGAGTATCTTGAGT 1148730 36 100.0 35 TATCTTGAGT .................................... CCGGGGGCCACGGCGAACTGGAAAGTTTTTAAGAC 1148801 36 100.0 33 TTTTTAAGAC .................................... TTGAGTCTAAGTGGAAGTCTGAGTCTTGATTAC 1148870 36 100.0 33 TCTTGATTAC .................................... TTGAGTCTAAGTGGAAGTCTGAGTCTTGATTAC 1148939 36 100.0 36 TCTTGATTAC .................................... CGAGTATTCCGTGAACAGCCAGACGGATCGGTTGTG 1149011 36 100.0 34 ATCGGTTGTG .................................... TGGTCGGTGGTACTAATGTCCTGAAACCCGCGAT 1149081 36 100.0 36 AACCCGCGAT .................................... CACTGATGGCGGGTGCGGGTATAGCAGGTGGAAGTG 1149153 36 100.0 35 GGTGGAAGTG .................................... CTTCTCACCGTCAAACATAATCCTGATGTTTGTTC 1149224 36 100.0 36 ATGTTTGTTC .................................... TTTAGACGAAATTTACGAACTCGGACAATCTCGCAC 1149296 36 100.0 34 AATCTCGCAC .................................... CCGAATTAGTATGAGGGCAAATAACGGTATGCCC 1149366 36 100.0 33 CGGTATGCCC .................................... TTGCTGTACCGTTCTAGGCCCATTAGGAGCCAT 1149435 36 100.0 35 TAGGAGCCAT .................................... TACAGCTTTCTGCCGCTCCAACCAGTATTGCCACT 1149506 36 100.0 35 TATTGCCACT .................................... TTGTATAGCCTGTACCACAACTTAACGGATGCCAA 1149577 36 100.0 35 CGGATGCCAA .................................... CAAGTAGGCTTTACGCAGTTGTAAATCAAGCGTCT 1149648 36 100.0 37 TCAAGCGTCT .................................... CCAGATAGCTTTGCCCCCCAACCCATAGAAAATCAAG 1149721 36 100.0 38 GAAAATCAAG .................................... TAGAACTGAACCGGCCTTAACCCTGACCCAATACAAAA 1149795 36 100.0 35 CAATACAAAA .................................... GTTATAGCGTTCCTCTCCCAATAGATTCTTAAGAG 1149866 36 100.0 36 TTCTTAAGAG .................................... TATCTACTTTAGGTTTGTACTCTTGTGATTTCCCGG 1149938 36 100.0 34 GATTTCCCGG .................................... TAGAGACGAATCAGAAAGAAGAGTTGCTTATTTT 1150008 36 100.0 35 TGCTTATTTT .................................... TCTACAAAACAAGTTAGATTGCTTAACCAAGAGAC 1150079 36 100.0 ACCAAGAGAC .................................... GGCACCTGCT ========== ====== ====== ====== ========== ==================================== 39 36 35 GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [10,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.40,-7.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [61.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [178,254] Score: 0/0.18 # # Final direction: F [0.64,0.37 Confidence: LOW] >NC_019680 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1105084 36 100.0 37 GGCAACAAAT .................................... CTCTTGCCGAAATGGTTGACTGGATTTGTGACAATCT 1105157 36 100.0 35 GTGACAATCT .................................... ATCAATACCCCAATCGGTGTTTCCACTTTATAGGA 1105228 36 100.0 35 CTTTATAGGA .................................... AGGAACACGCCACCGATAGGTAACAAAATCAATTT 1105299 36 100.0 35 AAATCAATTT .................................... TGTGGCAGTGGTAGCCGCATTTCCATCGTCATCTT 1105370 36 100.0 35 TCGTCATCTT .................................... TACCCACAAAGGTCTAGGGATTTTTTAATACTCTT 1105441 36 100.0 36 TAATACTCTT .................................... TTTACTAAATTCAGATGGGTGAATCATCTTTTTTGC 1105513 36 100.0 37 TCTTTTTTGC .................................... CAGTCTGGGGAAATAGTCTCTTTGTACGAAGCTCGAT 1105586 36 100.0 35 GAAGCTCGAT .................................... ATCAATACCCCAATCGGTGTTTCCACTTTATAGGA 1105657 36 100.0 35 CTTTATAGGA .................................... TACCCACAAAGGTCTAGGGATTTTTTAATACTCTT 1105728 36 100.0 34 TAATACTCTT .................................... CCGGGAACTCAGTCACAGGATAGGGTAGCGGGAT 1105798 36 100.0 36 GTAGCGGGAT .................................... AGTCCACTCGCTCACTGACGATCAACTGATTGCCCA 1105870 36 100.0 34 TGATTGCCCA .................................... TTTCTTGACTGCTAACGAATCACTGACTTTATAC 1105940 36 100.0 35 GACTTTATAC .................................... TACTAATTATGCTAATCCCATAACCAATCGAGGTA 1106011 36 100.0 36 AATCGAGGTA .................................... GCTCAACGTGCCTATTTCAAAACGCGCCATCATTAT 1106083 36 100.0 36 CCATCATTAT .................................... GCTCAACGTGCCTATTTCAAAACGCGCCATCATTAT 1106155 36 100.0 35 CCATCATTAT .................................... AATAAGTGCCGGGGTATCTTGACTTCCCCAGAACT 1106226 36 100.0 36 CCCCAGAACT .................................... TAGTAACCCAAATTAAAGAGCTAATAAAAGAATCTT 1106298 36 100.0 34 AAAGAATCTT .................................... CCGGATAGCGGGGGAAATTTGGAAACTATTCACC 1106368 36 100.0 34 ACTATTCACC .................................... CAGGCCAGCATTACCCGAGCGCAAAACCGGATCA 1106438 36 100.0 36 AACCGGATCA .................................... CAAAATGTTAGTAACTCTATCAAAGTGCAACTTAAC 1106510 36 100.0 38 GCAACTTAAC .................................... CGGCGGGTTGCCAGAATTGCTATGCCATCAACCAAGTA 1106584 36 100.0 37 CAACCAAGTA .................................... AATAGATAACCTTCAGGAAAACTCCAATTTAATACTT 1106657 36 100.0 35 TTTAATACTT .................................... AAAAGGGTTTCCATTTTTGTTAACTGCGTACACTT 1106728 36 100.0 36 GCGTACACTT .................................... CCTCGATTTTCGAGTACGGTCGTATTGTTTTACTTT 1106800 36 100.0 36 GTTTTACTTT .................................... AGTTAATCTCATCATTGAGCTTGTAGGGAATAAAGT 1106872 36 100.0 36 GGAATAAAGT .................................... AATTAAGGAAGCAACTCTCAAATTCTCTGCCTGGAG 1106944 36 100.0 35 CTGCCTGGAG .................................... CAGCGACATCGGCAATAAACTTGAGTTATCAGAGA 1107015 36 100.0 36 TTATCAGAGA .................................... CCTCGATTTTCGAGTACGGTCGTATTGTTTTACTTT 1107087 36 100.0 37 GTTTTACTTT .................................... TCTGGGTTTGAGGGCAATAATGGCAATGATGGAAAAA 1107160 36 100.0 34 GATGGAAAAA .................................... TGTTCATCCTGGCTAATCAAAGGCTCATGAGCAT 1107230 36 100.0 37 TCATGAGCAT .................................... ACGGATGTCTTATGAAAAGCTGCTTTGGTTTATCTGG 1107303 36 100.0 36 GTTTATCTGG .................................... GCTATCAATGGATTTGTGATTGAGTTAGCCAAAAAA 1107375 36 100.0 36 AGCCAAAAAA .................................... AATTTGGGAAGATGTCTCGTCAATTTCTACCCCAAT 1107447 36 100.0 CTACCCCAAT .................................... TATGTAAGCAG ========== ====== ====== ====== ========== ==================================== 34 36 35 GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [10,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.40,-7.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1793,277] Score: 0.18/0.18 # # Final direction: F [0.55,0.37 Confidence: LOW] >NC_019680 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2809537 36 100.0 39 ACGAACAAAT .................................... AGTCTAAGGAGAAAGAATGAAGGTTTTAGTAAATATCTT 2809612 36 100.0 36 TAAATATCTT .................................... ATCTCTATGGGCATCTGAGTGGGGAGTCTATTTATG 2809684 36 100.0 36 TCTATTTATG .................................... ATACCGGAATTATCGCTGAGATGCTTGACAATTTGA 2809756 36 100.0 36 GACAATTTGA .................................... GTCAAAGGAATCGGTGCTCGGTTCGTAAGCAAGAAA 2809828 36 100.0 36 AAGCAAGAAA .................................... TTCTTCAGGTAAAAACTGAAGTGCTTCAAGTGCGTC 2809900 36 100.0 37 CAAGTGCGTC .................................... TTCAAGCGCAGCAAGACTGGCCTCGGAATTACCTGAT 2809973 36 100.0 37 ATTACCTGAT .................................... CTAAAAAGCAGTTTGACCCCGCCGTGTTTTCTGTCCT 2810046 36 100.0 35 TTTCTGTCCT .................................... TTAGTGGATGGATTTACCAACTTATTATGCTTGTA 2810117 36 100.0 36 TATGCTTGTA .................................... GGAAATCTGGCAGAATCGGGACGTTTTACAATCCTT 2810189 36 100.0 37 TACAATCCTT .................................... CGATGGAAAAATATGCTGCTACATACCTAGATTCAAT 2810262 36 100.0 37 TAGATTCAAT .................................... TCAACCTTTTTTAGGAGACTGGCCGGAAATGATTGGT 2810335 36 100.0 39 AATGATTGGT .................................... CAGGTATAGTTACTATCTTTTCCCAAAACTTCTAGGGAA 2810410 36 100.0 36 TTCTAGGGAA .................................... GGTAGACAAACCCCGGACTCTGTAGGTGGGTTCTTA 2810482 36 100.0 35 TGGGTTCTTA .................................... CAGTTACAGGAGCCTTTACTACGCTATTGGGTACG 2810553 36 100.0 35 ATTGGGTACG .................................... CAGAAATATTCACCTGAATACTTTTGGAATCCCAA 2810624 36 100.0 37 GGAATCCCAA .................................... ATAGGGAGGGTACGTTAAACGGTTTTTATCCAAGTAG 2810697 36 100.0 36 ATCCAAGTAG .................................... CTATACCTGGTACAAGGTGAATGGGACTCTATTCAC 2810769 36 100.0 36 CTCTATTCAC .................................... GTGGAAAGGCTAAACCCTTTACACAAGTGTATTCTG 2810841 36 100.0 35 GTGTATTCTG .................................... AATACTTTTGGGCACTGGTAAATGCTGAGAAGCAT 2810912 36 100.0 35 TGAGAAGCAT .................................... TGTGTTGCAGGCAATGTCGGAGCTACCTTAAACAT 2810983 36 100.0 37 CCTTAAACAT .................................... CCGAATCGTCTGTATCAATGGCCTACACCGGCCGATA 2811056 36 100.0 39 CCGGCCGATA .................................... ATAAGCAATTGACGGGGTTAGGGTTCCGTCACTAAATAA 2811131 36 100.0 35 CACTAAATAA .................................... GGCCAGAGTCTTGCAAGATAGCTGGCTGGAGTTGG 2811202 36 100.0 39 CTGGAGTTGG .................................... GCAGGATGTTGCGGCCCGCCGACACTATCTTTATAACTG 2811277 36 100.0 36 TTTATAACTG .................................... TTGAAGTGACAACCAAGGATGAACGGAAACCATTCG 2811349 36 100.0 35 AAACCATTCG .................................... TCGACTTTACTGGCTTGCCATAATGCGGGTTTTCA 2811420 36 100.0 36 CGGGTTTTCA .................................... TAGATTTTAAAATTTCTAAAAATGTTTCATTGTCTC 2811492 36 100.0 37 TCATTGTCTC .................................... TTGACTACATGAATGCCAATGCGCCGTCCAGAAGTTT 2811565 36 100.0 35 CCAGAAGTTT .................................... GTCAGAGAATGAGGACAAATTTAACGGGTGTAAAG 2811636 36 100.0 36 GGGTGTAAAG .................................... AACAAAACCGAAGTCATCTACAATAACGAATCTTAT 2811708 36 100.0 36 CGAATCTTAT .................................... AGAGTATTACTGTGATCTAGTTGCGTACTACAACAA 2811780 36 100.0 35 ACTACAACAA .................................... TTGCAGGTGGAATCCAATGAGTCCGCGCAATCCAA 2811851 36 100.0 37 CGCAATCCAA .................................... CGTTGAAGTATTTGCCGTGAGAGGGGGCGTTCATTAA 2811924 36 100.0 36 CGTTCATTAA .................................... AGATGATGTTTATCGTTGCGAATCTGATATTCTAAA 2811996 36 100.0 35 ATATTCTAAA .................................... CTAGAGTAGGTGACTGTATTGATTTATTTTATCGT 2812067 36 100.0 35 ATTTTATCGT .................................... AAGAAACTTCGTTTTCAAAGCCTCTTCTCATTGCG 2812138 36 100.0 38 TCTCATTGCG .................................... ATCAGAATCGTCTTACTTATGCGCCTTATATCGAATTT 2812212 36 100.0 35 TATCGAATTT .................................... TCATCCCCTCACACACCGTACACATAACGAAGGGA 2812283 36 100.0 37 AACGAAGGGA .................................... CGAATTTACACTTGAAGAAATTGGAACGGATGGAAGT 2812356 36 100.0 38 GGATGGAAGT .................................... CAAGAGAAAGTGGATAACCGCTTTAAGCAACTGCAAGA 2812430 36 100.0 34 AACTGCAAGA .................................... GAAGTCATTTATAACAACGATTCTTATGTACTCA 2812500 36 100.0 35 TATGTACTCA .................................... TCGATTCTCAGATAGGCTATAGGCTTAATGCCTAA 2812571 36 100.0 35 TAATGCCTAA .................................... TTTATTTGCCTAGCATGGTTGCTTTGTCTTTGATA 2812642 36 100.0 35 GTCTTTGATA .................................... TTAACTATCCTTGGTGACAGTAAGGCACATTACAA 2812713 36 100.0 35 CACATTACAA .................................... TTTATTAGGGTATGCATTTATGACTGTTATTTCTA 2812784 36 100.0 35 GTTATTTCTA .................................... TAAATACTAGGCTATCCTTATTTTTTGTGTGTTCA 2812855 36 100.0 35 TGTGTGTTCA .................................... AGACGATCAGCAACCAGAACAACCCCCTATTTTGA 2812926 36 100.0 39 CCTATTTTGA .................................... CAATAATCCCAATGGATCGGTTTTCCATCCTTTGTATGG 2813001 36 100.0 40 CTTTGTATGG .................................... TAAAGTGTCGAACTCTCTTTTTGTTAGACCTTGATAACCT 2813077 36 100.0 36 TTGATAACCT .................................... AAGATGCAGTTGAATGTACTCTCTGACAGATACTAC 2813149 36 100.0 37 CAGATACTAC .................................... GCAATGACGAAGAGTACGTTCGAGTAAAAGAAGCAGT 2813222 36 100.0 36 AAGAAGCAGT .................................... CGTAGAGGAGCTAGTAAACGTAAATTAAAGGATTTT 2813294 36 100.0 37 AAAGGATTTT .................................... ATAAAATTAATGCCTGATTCTCAACTGTTTCAGGTAG 2813367 36 100.0 35 TTTCAGGTAG .................................... AAATAACACATCCTGCGATGTCGTAGAAGATATTA 2813438 36 100.0 36 GAAGATATTA .................................... CATTCGGGAACGGGCAAACGCTGTTGGAACATTTAC 2813510 36 100.0 36 GAACATTTAC .................................... GTTACACTGCAATCAGTACCCACTTGCCACCCTAAG 2813582 36 100.0 38 CCACCCTAAG .................................... TGGGTAACGGTGGGATTCCCTTTCTCAATCTCGTTCAG 2813656 36 100.0 36 TCTCGTTCAG .................................... TGGCAGCAAAACTCGCAGCTTCATCTGCCGATTTAC 2813728 36 100.0 35 GCCGATTTAC .................................... CAAGCACCTAAAAATACTTACCCATTGAAAGTCGC 2813799 36 100.0 36 TGAAAGTCGC .................................... TTATAAGGAGAATGATTATAAATTCGTCTCTAGTAA 2813871 36 100.0 35 TCTCTAGTAA .................................... CTAACACGATTGAGGCTGAAGTTATCGTAGGCCGT 2813942 36 100.0 36 CGTAGGCCGT .................................... TTTCTACTATGATTCCCATGGCACTGGTTATTTTGT 2814014 36 100.0 36 GTTATTTTGT .................................... TTGAATTTGATTTCCATTCTTCCATTAACAACACCT 2814086 36 100.0 36 AACAACACCT .................................... AAATCTGTATGAAACCTTTGAAGCGGGCGATAGCGA 2814158 36 100.0 37 GCGATAGCGA .................................... ACGAGATGGTTTAAGCCTTTCATACGCCTTCAACAGT 2814231 36 100.0 40 CTTCAACAGT .................................... AGATACTCGCAGGGCTGCTAAAGCCCTTAAAAGAAACGCA 2814307 36 100.0 36 AAGAAACGCA .................................... TTATATCCGTGTTCTGAAGTGTTTGTTTGGAGGTCA 2814379 36 100.0 35 TTGGAGGTCA .................................... TTAGATTCGCATCCGTCTTGTTGATATGAATAGAC 2814450 36 100.0 35 ATGAATAGAC .................................... TTGACCTGGACTACTTTCCCTGTACCCTTCTGTAC 2814521 36 100.0 36 CCTTCTGTAC .................................... GCACTTACGTTGTACGAAGCATTGCGTACCTATAAA 2814593 36 100.0 35 TACCTATAAA .................................... AAGAAGCAGGAAATCCCCTTAGACATCAAGACGTA 2814664 36 100.0 35 TCAAGACGTA .................................... AAAAACATCAATCTGTTTAATGCCATCGGTTCTAA 2814735 36 100.0 37 TCGGTTCTAA .................................... AACTGCAAGATCATTGTAAATCTCTTCCCGATATTGG 2814808 36 100.0 36 CCGATATTGG .................................... GCGTCAGTAAATCTAATAATCTTGCGTTGTTTTCGT 2814880 36 100.0 35 TTGTTTTCGT .................................... TCTTCGTCCTCACTGTTAAATCCCTTTTCTATTTT 2814951 36 100.0 37 TTTCTATTTT .................................... TTCTAGTGAGTAATCGTCAGCGCAGTCTTTTAGTCTA 2815024 36 100.0 36 TTTTAGTCTA .................................... ATTAATCGAATTAACGGCGGATACGGCTGAGGTTAC 2815096 36 100.0 CTGAGGTTAC .................................... TCCTTCTATT ========== ====== ====== ====== ========== ==================================== 78 36 36 GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-1.90,-1.80] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [539,189] Score: 0.18/0.18 # # Final direction: F [0.18,0 Confidence: MEDIUM] >NC_019682 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1325066 37 100.0 35 NNNNNNNNNN ..................................... CTGTCTAGAGTATTCATTAGCCGTAAACTGATTAC 1325138 37 100.0 35 NNNNNNNNNN ..................................... ATTTTTGATTTAATGAGATTAACAACGGCAAATAT 1325210 37 100.0 38 NNNNNNNNNN .......................T............. AGGAGCGGGACTGACCATAGAACTCCCCACAATATCAC 1325285 37 100.0 40 NNNNNNNNNN ..................................... TCTGGAGTGACTTCCACGTATCGCTGTGTCCCCAGCGGGA 1325362 37 100.0 33 NNNNNNNNNN ..................................... CTCACCCAATTGCTGTCTGAGTTCTTCGGCTGA 1325432 37 100.0 35 NNNNNNNNNN ..................................... CGGGATGCCATCAAGAAAGTCGAGGCTTATTTCTC 1325504 37 100.0 36 NNNNNNNNNN ..................................... CGCTCTCGCCTTCTAGCCCCCAGGTGGTGACGTTCT 1325577 37 100.0 38 NNNNNNNNNN ..................................... TAATACCTTTTCTACCTTCCACAAATAAGGATTTAATT 1325652 37 100.0 34 NNNNNNNNNN ..................................... TTCAGACCCAGATTACTCCTGTTGTTTCTTGGGC 1325723 37 100.0 36 NNNNNNNNNN ..................................... CCTTAGGGCAACTTGTCAGGCTCAACCCCCGTGACG 1325796 37 100.0 46 NNNNNNNNNN ..................................... TACTGTGCCGCAGCCAGCGATCGCCTCCTACTGTGCAGTCCAGTGC 1325879 37 100.0 35 NNNNNNNNNN ..................................... TTTTAATCCCAACAAAACCCGCCTCAAAAACATCA 1325951 37 100.0 34 NNNNNNNNNN ..................................... TTTAGACTTAGACCCGGATGACTAAATATGCCAT 1326022 37 100.0 35 NNNNNNNNNN ..................................... TTGTGCATAGTAGCTGCAAAGGTTAATACACTCAG 1326094 37 100.0 34 NNNNNNNNNN ..................................... AGAAAATTTTTCTGAGAAACAGGGGTTCAAGGAT 1326165 37 100.0 40 NNNNNNNNNN ..................................... GGGGCGGGCGTACTCCATCTCTGACTCCCGATAAACAGAA 1326242 37 100.0 36 NNNNNNNNNN ..................................... TTTACCAACTAGGATTAGACATGCCTGATACCGATA 1326315 37 100.0 39 NNNNNNNNNN ..................................... CAGAGTCGCGGGTTGTGTCCAAAGCAGCTTGCCCCATTG 1326391 37 100.0 34 NNNNNNNNNN ..................................... TTAATACTTGTCATGCCGCTGACATCTCTAAGGT 1326462 37 100.0 37 NNNNNNNNNN ..................................... TAATTAATCGTTTTACATCCAGTAAGTTTCTATTCTC 1326536 37 100.0 38 NNNNNNNNNN ..................................... CTAGTGATGGTGGATTATTGGTATTAATAGCCAAGAAA 1326611 37 100.0 32 NNNNNNNNNN ..................................... GCGCAACCAACTGCGAATGGTACTTTCTGGTA 1326680 37 100.0 38 NNNNNNNNNN ..................................... TAGTGGATATCTTCTATTGAAACTGGCATCTTGAGAGC 1326755 37 100.0 37 NNNNNNNNNN ..................................... ACAAAGTCAAGGATAAATACTAATGGCAAAGGCGGTA 1326829 37 100.0 36 NNNNNNNNNN ..................................... ATATCGGATCAGCGTAGTAACCGTCAGTTTGAGGAA 1326902 37 100.0 41 NNNNNNNNNN ..................................... TTGAATCTCTGTCTGTACCTCAGCCTCGGTCTTTTGAGCTT 1326980 37 100.0 33 NNNNNNNNNN ..................................... ATGGACATCAAGCTGAGTATGTTGTCGGCAAAG 1327050 37 100.0 38 NNNNNNNNNN ...................A................. ACCCACAGTACTTTTATGCCTTCGGCTTCACAGATTTG 1327125 37 100.0 35 NNNNNNNNNN ..................................... AAACACTCAAATCCCTGTACACAGACTTGATTTAC 1327197 37 100.0 35 NNNNNNNNNN ..................................... CCAGGTTAATGGCTCGTTTGGATTTGTGAAAGTGC 1327269 37 100.0 36 NNNNNNNNNN ..................................... TTAAATTTTTACGCAGGGCTGACTTAACATCTTTAT 1327342 37 100.0 35 NNNNNNNNNN ..................................... TCAGAAATATATTCACGGTTAAGCGGGGTTTTAAA 1327414 37 100.0 37 NNNNNNNNNN ..................................... TTTTTACCAGCAACTGTAGAAGAGTAGGTTCCTTGAT 1327488 37 100.0 35 NNNNNNNNNN ..................................... CCTTGCCCCTAGAGTTAATCCCAATCCTTTTTATA 1327560 37 100.0 36 NNNNNNNNNN ..................................... CCAGAGACTGCAAGGTTATAAATTTCATCAAAAAGC 1327633 37 100.0 45 NNNNNNNNNN ..................................... TTGACCCTACGTAGTAGACTAATGCTCGTTTGTTTACATTTGACC 1327715 37 100.0 37 NNNNNNNNNN ..................................... AAATCTGGGCTAAAGACTTTGCTGCTCTTGGCTGAAT 1327789 37 100.0 38 NNNNNNNNNN ..................................... TCCTCAAAACCCCTTTAGCTGATCAGGTTGATACGCCC 1327864 37 100.0 38 NNNNNNNNNN ..................................... ACGCTCAGTAAAGGAAACCTGCTCAAGAAACCGACTAT 1327939 37 100.0 36 NNNNNNNNNN ..................................... GTAACTGTACGCAGCTACGGCGACCATCTATGAACA 1328012 37 100.0 35 NNNNNNNNNN ..................................... CAAAGGACAAAGACCAAGATAGTGTATATGATACA 1328084 37 100.0 36 NNNNNNNNNN ..................................... TTAGGAAATTATTTACGGTAAAGTGTGGTGATGTCG 1328157 37 100.0 36 NNNNNNNNNN ..................................... TCAACCATGATTAATCCTTGCGGCATAAAGGTGGTT 1328230 37 100.0 35 NNNNNNNNNN ..................................... TGCATCCAGTGCAAAGGTTCCGGTATGCCCTACCG 1328302 37 100.0 35 NNNNNNNNNN ..................................... CATCCAGTCAGGGAGTAGTGATATGTCTACTTCGA 1328374 37 100.0 36 NNNNNNNNNN ..................................... AAAGGTGACTTATAAAAAGTTCATTGCATCTATAAG 1328447 37 100.0 35 NNNNNNNNNN ..................................... TCAAAGAATGATGGCAGAATTTGCTTATGGAGATT 1328519 37 100.0 37 NNNNNNNNNN ..................................... AATGGCGATCGCGGAAACTGCTAATCCTTGTATCCTT 1328593 37 100.0 36 NNNNNNNNNN ..................................... ACAACATCGGGGAAATACTTCAAGAGCTAGCTACAT 1328666 37 100.0 37 NNNNNNNNNN ..................................... CTCTGCGATATCCTTGCAGAGATCAAGAGTATTAATA 1328740 37 100.0 37 NNNNNNNNNN ..................................... TTGCTGAAGTAATTGATATGGCAGTGCAATTAGAAGG 1328814 37 100.0 37 NNNNNNNNNN ..................................... GCTGCGGTGAAATTGTTAAAAAGACTCTATCTACTCG 1328888 37 100.0 36 NNNNNNNNNN ..................................... TTTTCCTAGCAAGATATAAGCTAGCCAAATTGCATT 1328961 37 100.0 36 NNNNNNNNNN ..................................... ACTACCACTAAGTAGGTTATTCAAACTACGTACTTA 1329034 37 100.0 35 NNNNNNNNNN ..................................... GTCCATATTTGCGGAGAATAGCCGCCAATTAAAAT 1329106 37 100.0 37 NNNNNNNNNN ..................................... TTTCCTTCATTAAATCGAAGTCACCATTAGAAACAGC 1329180 37 100.0 34 NNNNNNNNNN ..................................... ATAAATCTTTTTCAATTAGACAAAAGTCCTCAGC 1329251 37 100.0 35 NNNNNNNNNN ..................................... ACCCCGGATGATGTAGAGAGTTTTATTCATAGTGT 1329323 37 100.0 37 NNNNNNNNNN ..................................... TCAGCTTTAGATGTTGAGTCTTGAGCAGCCACGGCAT 1329397 37 100.0 35 NNNNNNNNNN ..................................... ATGCTGAAAATCAGCATCATCTGCTAAATTGCCTT 1329469 37 100.0 36 NNNNNNNNNN ..................................... GTGAGCAAATTTCAAACGTGCAATAGCCATAGCGCA 1329542 37 100.0 36 NNNNNNNNNN ..................................... TATTGTCCACTGCAGTTTGAACATCGGCTGGAACTG 1329615 37 100.0 34 NNNNNNNNNN ..................................... TTTAGCAGGAACTTTCATACGACATAGAGGCAAA 1329686 37 100.0 37 NNNNNNNNNN ..................................... TAAATACTTGCGTAAAAGAATCACGCATATTATCAAA 1329760 37 100.0 35 NNNNNNNNNN ..................................... GCATTACTTGGCATCTTGCTAGTGAAATTTTGCAA 1329832 37 100.0 36 NNNNNNNNNN ..................................... AAGAAAGTATCTTTAATACCCAGCACACAATAATGT 1329905 37 100.0 37 NNNNNNNNNN ..................................... TCAAGTATCAACTTTGTGGCAACACTTGACGACATAA 1329979 37 100.0 34 NNNNNNNNNN ..................................... TCATCATCTCTCTCTAGCAATGCCCTGATAAACT 1330050 37 100.0 37 NNNNNNNNNN ..................................... GTCTTCAGACTTAATTTTTTCTGGCTCGTAAGGAGAG 1330124 37 100.0 39 NNNNNNNNNN ..................................... CTCCTCATATTCCTCAAAAGTCTAAATCTTCTGGGCGAT 1330200 37 100.0 36 NNNNNNNNNN ..................................... AATCCTTGCTGTGTAAGGCGGTGACGGGTGATGATG 1330273 37 100.0 33 NNNNNNNNNN ..................................... CTAAACCAACATCGGGAACTACTCTATATCTTT 1330343 37 100.0 36 NNNNNNNNNN ..................................... GGTACTTCCTGTAAAACTTGAGAATGAATACTTTTG 1330416 37 100.0 37 NNNNNNNNNN ..................................... TTCAGCCACATAGATATATTCATTTGAGATACTGTTA 1330490 37 100.0 35 NNNNNNNNNN ..................................... TCGGACGTAAAAATTCCAATTTTGGACAATTTCAA 1330562 37 100.0 34 NNNNNNNNNN ..................................... TTGATTGTAATGTGTAATATATAATTATATATTA 1330633 37 100.0 38 NNNNNNNNNN ..................................... AACTCTAAAAAGAAATCAGATGGCTTTGGTAAAGACAT 1330708 37 100.0 37 NNNNNNNNNN ..................................... GTAGCAATCAAAAGCGGTACATTCAATACATTCACAA 1330782 37 100.0 35 NNNNNNNNNN ..................................... CTAGGAAGCAAGGCGGCTCAACAAGGTAAATGTCG 1330854 37 100.0 36 NNNNNNNNNN ..................................... TTCCCAGAGTAGGTTTGATGTCCATGATGTTTTCAT 1330927 37 100.0 37 NNNNNNNNNN ..................................... CTGCCACTGGGGTTGCTTCTTCCATCGCATTTGAAGG 1331001 37 100.0 34 NNNNNNNNNN ..................................... TGTTGAGGGCTGGGGCTGTGGCACTCCCTTTCCT 1331072 37 100.0 37 NNNNNNNNNN ..................................... TTGTATCAGCCTTTGTGGGGGCGTTATGTGCGATTGT 1331146 37 100.0 35 NNNNNNNNNN ..................................... AGAAGCAATGTCAGCAGATGTAAGACCCGCTATGA 1331218 37 100.0 1 NNNNNNNNNN ..................................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 85 37 36 GTTTCAATCCCGTTGCCGGGAATCATTTATTTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:59.46%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.30,-8.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [40,218] Score: 0.18/0.18 # # Final direction: R [0.27,5.46 Confidence: HIGH] >NC_019682 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1341653 37 100.0 38 GCTCGCTAGG ..................................... CTTTCGTTGCTTCTCTATCTTTTCAACCGTTCATCTAA 1341728 37 100.0 34 GTTCATCTAA ..................................... AAGTAATCTACTGTGTACGCCGCTAATCGGTCAG 1341799 37 100.0 35 AATCGGTCAG ..................................... TTTTATTGTCTGGCATTACTCCTCAGAAAGCTGAC 1341871 37 100.0 33 GAAAGCTGAC ..................................... TAAGACTCGCTATTAAGCTTGTTAACCGTGTAG 1341941 37 100.0 41 AACCGTGTAG ..................................... TACTGTTTTCCCAGAAATAAGTGATAACAAATATGTATTAA 1342019 37 100.0 36 TATGTATTAA ..................................... GCTGCTGATGATATGCCTGGGTTATATATAGATGGT 1342092 37 100.0 37 TATAGATGGT ..................................... TACCCTTCGCGTTAAGGGTCTATTGGTGGCTATAGGG 1342166 37 100.0 37 GGCTATAGGG ..................................... AGCCGAAAGAGCGTATATATCCACACGATAGACTAGC 1342240 37 100.0 37 ATAGACTAGC ..................................... TCTTTTTACTAATAAGTAATACTTCGCAATCTGAGAA 1342314 37 100.0 37 AATCTGAGAA ..................................... ATAACAATTGATTTAGCTGTTATCAGTACTAGCTGCA 1342388 37 100.0 36 ACTAGCTGCA ..................................... ATCTTTACAGAATCTTCATGAATAGATTCATCAAGA 1342461 37 100.0 35 TTCATCAAGA ..................................... GTTGTCGGTTGTGCCCGTGGCGTTGATGCTTTCTT 1342533 37 100.0 36 ATGCTTTCTT ..................................... CTGACTTTTCGTGATTCGTAAGAACTACAGCAAATA 1342606 37 100.0 36 ACAGCAAATA ..................................... TTTCGGCTTGTAAAGAGTTTGCAAAGATAGCCCGTA 1342679 37 100.0 35 ATAGCCCGTA ..................................... TAGTGAAAAAAATATTTAGGATTTTATGACTGAAA 1342751 37 100.0 34 ATGACTGAAA ..................................... CATTCTTTACTGGATGATAAAGCAAAGCAAGCGG 1342822 37 100.0 36 AAGCAAGCGG ..................................... ATGTTTCCCCCCATGAGTATTACTATTAGACCACAG 1342895 37 100.0 36 TAGACCACAG ..................................... TAAACTCCTCTTCTGCCTGCTGTTGTCGCTTTGGGA 1342968 37 100.0 39 CGCTTTGGGA ..................................... TACAGCGTTTTTCTCTTCCTCTGTTTGGACAAGTCTAAT 1343044 37 100.0 CAAGTCTAAT ..................................... GATATACGCA ========== ====== ====== ====== ========== ===================================== 20 37 36 CTTTCAATTAAATGAAACCCGGCAACGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:59.46%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.40,-5.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [359,389] Score: 0/0.18 # # Final direction: F [0.37,0.27 Confidence: LOW] >NC_019682 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 163827 36 100.0 35 TACCCCCAGG .................................... ACGAGTACGATGAAGACCGTGGTTATAAAATAATG 163898 36 100.0 37 TAAAATAATG .................................... CTAAAGAACTTGGTAGTTATCGTATCAAGCAAAATCG 163971 36 100.0 36 AGCAAAATCG .................................... CTAGTTTTGTTGATGCTGAAAGAGCAGTCCCATTAG 164043 36 100.0 42 GTCCCATTAG .................................... CGAGGGGGCGATTGAAGCCTTGATTAATCAGGTGCGCTGGGG 164121 36 100.0 38 TGCGCTGGGG .................................... TCTATAAAGATTTCATGGAAGCTTTCCCAAATGCTTTG 164195 36 100.0 35 AAATGCTTTG .................................... AGCTGGAAAAATTACGGTGAGTACGAACTGCATGG 164266 36 100.0 38 AACTGCATGG .................................... TCAATCCTGTATCCAGAAATGGATACAGTCACGGCGAG 164340 36 100.0 38 TCACGGCGAG .................................... TTCCTGGATCTATGGAAGCAGGTGGAAACCAAGGGTAG 164414 36 100.0 39 CCAAGGGTAG .................................... TTACAGGAGGATACCTTTATTAAGTCTGATCGTTATGAG 164489 36 100.0 34 TCGTTATGAG .................................... TATTAACGATGAATCTATAATCTATGTGGAAGAG 164559 36 100.0 34 TGTGGAAGAG .................................... GAGATATTAAAGTGGATTGGTTAAAGCTATTTAG 164629 36 100.0 34 AGCTATTTAG .................................... GCAAAGAAGCCGCCAACGAAGCCAAACCCTTGCG 164699 36 100.0 37 AACCCTTGCG .................................... CTGACTGGCTTGTCAACCACAGTCAAATCCCAGCAAT 164772 36 100.0 38 TCCCAGCAAT .................................... CTCGTCACATGCTCTTATCCGCAAATAATATTTCCTAT 164846 36 100.0 37 TATTTCCTAT .................................... TCACCGCACTAAGCTAACAAAAACAAAGATAAAAGGT 164919 36 100.0 36 GATAAAAGGT .................................... TAGGTTGTTGCTATGGGCAAATCCCAGAGATTAATT 164991 36 100.0 GAGATTAATT .................................... AGCTGCCATC ========== ====== ====== ====== ========== ==================================== 17 36 36 TTTCCATTAATTCCGCTTCTAAAGAATAGAAGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.89%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.30,-2.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [2982,555] Score: 0.18/0.18 # # Final direction: R [0.18,0.37 Confidence: MEDIUM] >NC_019682 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 2900728 35 97.1 40 TTCTTCCTTT ............................T...... GTGCGTCAATTCCACTCAACGGAGCTTTCGGATCTTTATG 2900803 35 100.0 37 GATCTTTATG ................................... CATGCAGAAGACTGTACCAAGGGAGGGTTTAACATTT 2900875 35 100.0 38 TTTAACATTT ................................... AGCTCGGAGAAAAAGACAAAAACATATTGCTAAGTGCA 2900948 35 97.1 37 GCTAAGTGCA ............................T...... CAAAAACTCTTACATTTCTATACCCGGCATTAACACT 2901020 35 97.1 36 CATTAACACT ............................T...... TCTGAAATCTCAAGACTATCAACTGATTGTAAACCT 2901091 35 97.1 42 TTGTAAACCT ............................T...... CACTGGGTGAGGAGGTGCTAGCTGAAATAATCTCACCAACAA 2901168 35 97.1 40 TCACCAACAA ............................T...... TCAACACTAATGGTCAGACACTGACAGAGGTGAGAGAGAA 2901243 35 100.0 38 TGAGAGAGAA ................................... ACCCAACTTGCGTGCTATTTTAGCTGGAATTATAATAG 2901316 35 100.0 38 ATTATAATAG ................................... CTGTTGAAGGGCATCCGCGAGATGACCTCTGGAAACTG 2901389 35 100.0 35 CTGGAAACTG ................................... TGGAGGAATAAGGTACTCGGAGGGTTCGTGAATAG 2901459 35 100.0 43 TCGTGAATAG ................................... GCTTGGAAACTGGGGCTTGTCAAGACCCACCCATAGGCGACAA 2901537 35 100.0 38 TAGGCGACAA ................................... ACTGCTCAGTTTCCTCTAGTAAGAGGTGTAGGAGAAAG 2901610 35 100.0 39 TAGGAGAAAG ................................... CGTTTCTGTTCACAAACTTGGGGTAGGAAGCTGTCACAT 2901684 35 100.0 40 GCTGTCACAT ................................... CAGGGATGGAGACTTTAAAGTTTCTACCGGCGCTTTAACG 2901759 35 100.0 36 CGCTTTAACG ................................... CAGGATTTACCCGAACAATAATGCAGCAGCATATTA 2901830 35 100.0 38 CAGCATATTA ................................... TATCGGCTTCCAACCGATGAAGCATGGAACAGATTCTG 2901903 35 100.0 38 ACAGATTCTG ................................... TACTGAGGAAAAAATTCAGGAAGTTTATGATGGAATTG 2901976 35 100.0 39 GATGGAATTG ................................... TGTTTATTCTGTGGTTCAGAGATGACTTAGGAAAAAATG 2902050 35 100.0 37 GGAAAAAATG ................................... TTGAGTTTTTTACTGAACTCAAAAAACCAGAAAATAA 2902122 35 100.0 38 CAGAAAATAA ................................... CAGTTAACTTGATTAGAGATTCTAATGCTAACAGTATT 2902195 35 100.0 40 TAACAGTATT ................................... CGATCTCGTTGAAGAGAATCGCATACGACGCATCCAAAAT 2902270 35 100.0 CATCCAAAAT ................................... GGCAACACCG ========== ====== ====== ====== ========== =================================== 22 35 38 GTTTCCATCCCCTCACGGGGTAAAGGAAATAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.29%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [61.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [347,5204] Score: 0.18/0.18 # # Final direction: R [0.27,0.96 Confidence: MEDIUM] >NC_019682 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 2902343 35 100.0 41 GACGTCTCGG ................................... AATTTTTAGGGGAATTTCTACCCCTCTAAAAAACCAACTTA 2902419 35 100.0 36 AACCAACTTA ................................... ACTATTTGGAAGGTGGAGATCAAAAAAACCAACTTA 2902490 35 100.0 42 AACCAACTTA ................................... TTTCTGATTTCATCTTGCAACCAACAGGCACTGTAATCAACA 2902567 35 100.0 42 GTAATCAACA ................................... GAGTTCAAAAAGACGTGCAAGGAAATCCAAACGACAGAAATG 2902644 35 100.0 40 GACAGAAATG ................................... AAGTGCAAAAAGCACTTTCTTTGACTCATTAAGATTTAAC 2902719 35 100.0 36 AAGATTTAAC ................................... AAGTCTCCAACCAAGTCGCCGAACTCGGCGCATTGG 2902790 35 100.0 37 GGCGCATTGG ................................... GACTTCGAGAACGCGGCACGCTCCCTTGAGTGTGCTT 2902862 35 100.0 39 GAGTGTGCTT ................................... TGGGTATCAGAATTTTTGTCTGAACCCGAAACCAAAGAT 2902936 35 100.0 38 AACCAAAGAT ................................... TGACAAGGAGTTTTCCGCTCCTTGCCTGAAAGGCGAAG 2903009 35 100.0 42 AAAGGCGAAG ................................... AATCATCACACTCGCGTGTAGTGTGCTGGCTTTTTATATTTT 2903086 35 100.0 35 TTTATATTTT ................................... AGCGTTCAAATCAGCAACGGTCGCGTGATTGTTGA 2903156 35 100.0 43 TGATTGTTGA ................................... TTCTTGTAACCTGTTGGGAGAATTTCACAACGAACCTTATATA 2903234 35 100.0 37 ACCTTATATA ................................... AGTTACCAAATGGCAATACTGTGTTCTGCGAAGAACA 2903306 35 100.0 36 GCGAAGAACA ................................... TCTTCTTTCTCAATTCATCGGTTTTGCAGGACACTG 2903377 35 100.0 37 CAGGACACTG ................................... ATGGCACCATAAAATTTGGTGCTTGGTCTATTGCAAG 2903449 35 100.0 32 CTATTGCAAG ................................... ATTGAGGGAACAAAGTTCCCCCGCAACCCACT 2903516 35 100.0 37 GCAACCCACT ................................... TGGATTGGGCGCAAAACAACAATCAGCCGTTGCTGAT 2903588 35 100.0 38 CGTTGCTGAT ................................... AAGATTTCAAGAACGCATTGAAACAAACGTTTCAAGAT 2903661 35 100.0 37 GTTTCAAGAT ................................... TTTATGGGACTATTAATCTTGTAGGATGGACTGGAGG 2903733 35 100.0 GGACTGGAGG ................................... GAGGGTATTG ========== ====== ====== ====== ========== =================================== 20 35 38 GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.29%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [1962,3741] Score: 0/0.18 # # Final direction: F [0.37,0 Confidence: MEDIUM] >NC_019682 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2904093 36 100.0 38 AGGAACGGAA .................................... TAATACAGCGTTTCTGCTTTATGTCATCAGCACAAGAC 2904167 36 100.0 33 AGCACAAGAC .................................... AGGAGGAGGAGGACGAAGAGAAAGAAGACCCCA 2904236 36 100.0 41 GAAGACCCCA .................................... TTGTTGGATGTCTTGGAAAAAGCTTGCCCTCCTTCCAAAAA 2904313 36 100.0 37 CTTCCAAAAA .................................... TGTTGACCTTTCTGCCCCCCTGAGGGCCAACGGTCCG 2904386 36 100.0 35 CAACGGTCCG .................................... ACTTGGATAACTTTCTTGGGGACACCCGTTGCAGA 2904457 36 100.0 CCGTTGCAGA .................................... CCTACTCATT ========== ====== ====== ====== ========== ==================================== 6 36 36 AGTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.30,-7.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [3712,3016] Score: 0/0.18 # # Final direction: F [0.37,0 Confidence: MEDIUM] >NC_019682 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 3051419 35 97.1 37 AAACAAAGAG ....T.............................. GTAAAAACCCGCACAGTCGGGGAAAGAATGGAAGTTA 3051491 35 100.0 38 ATGGAAGTTA ................................... AGTGCGCGGCGGGGCTGTACGAAGAAGAATGCAAGCGG 3051564 35 100.0 38 ATGCAAGCGG ................................... CGCATCTTGCGCAACGCAAGTTGATAAATACGCTTAAA 3051637 35 100.0 37 TACGCTTAAA ................................... AATGCAACAATATATTTCAGCCTGCAATAAGGCAGGA 3051709 35 100.0 40 TAAGGCAGGA ................................... ATAAGAGATATTCATATAGCTATAGGTGTCTTATTAGACG 3051784 35 100.0 38 TTATTAGACG ................................... AGGTGGAGCTGGAATACAAAACCAGCCTAAAGACAATA 3051857 35 100.0 36 AAAGACAATA ................................... CCGTGTAGTTCGTCCCTGCCCATGCACAGCTAAGTA 3051928 35 100.0 35 CAGCTAAGTA ................................... ATGCCACGGCTTCCGAGGTCGTTCCTCCCACTGTA 3051998 35 100.0 43 TCCCACTGTA ................................... AAAAACGGAAGTGGTGCGGGAGATGAAAGTAATACAACGTTAA 3052076 35 100.0 41 ACAACGTTAA ................................... TCTTTGTGGTATCGGATATTTTTCTGAAAACCACGGCAACT 3052152 35 100.0 38 CACGGCAACT ................................... CAGCAGCTAAAGAAGCAGAAAATTCTGCACAGACGACA 3052225 35 100.0 38 ACAGACGACA ................................... AAGATGGTTTGAAGTTTTTGCTAGGAATTGAAAAAGAA 3052298 35 100.0 37 TGAAAAAGAA ................................... TTGGTTTTAGTAATTATATTTTTATAATCATTAAAAC 3052370 35 100.0 36 TCATTAAAAC ................................... GCCCACATTGAGAAACCAACAAGTTCAGGGTGAAAA 3052441 35 100.0 37 AGGGTGAAAA ................................... AGCTACGCTAAAGAGTGTGCTAAAGCTCTTGAAAGAG 3052513 35 100.0 39 CTTGAAAGAG ................................... AGTTCGATTGCTTGCGCTACTTGCGCAAGCAATCAGAAG 3052587 35 100.0 38 CAATCAGAAG ................................... TTTATAGACCAGAATCCGTCAATAAGTAATTTTCAATT 3052660 35 100.0 42 ATTTTCAATT ................................... CAAAGAGGCTGCCGTTAGCCTCGCAAATAGCATTTTTTACCA 3052737 35 100.0 37 TTTTTTACCA ................................... ACCGTTCCCGCTTCATCTATTATGATGCCGAAACCTT 3052809 35 100.0 36 CCGAAACCTT ................................... AACGAAGCTATGCTTCAGTGCCTCAACCTCGCCATT 3052880 35 100.0 37 CCTCGCCATT ................................... AGCTATCTAAACAACCCTTTTGTCTTAAATGATAAAG 3052952 35 100.0 37 AATGATAAAG ................................... AATTGAAGAAGAACTACTAGTGGACGGAAGTCCACTA 3053024 35 100.0 AAGTCCACTA ................................... CCTACCCATT ========== ====== ====== ====== ========== =================================== 23 35 37 GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.29%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [55.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [95,388] Score: 0.18/0.18 # # Final direction: F [0.64,0.59 Confidence: LOW] >NC_019682 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 5067421 37 100.0 32 GACGCAGGCG ..................................... TTCTTATCAAGATGCCGCGATCGCGGCATTAA 5067490 37 100.0 34 GCGGCATTAA ..................................... AAGGTAGATTAGCGGAGTTTACCAAAGATATTAA 5067561 37 100.0 42 AAGATATTAA ..................................... TCAAAAAAAGGAATCACGATGAAAATTTTAATTTACTCTATG 5067640 37 100.0 34 TTACTCTATG ..................................... ATCAGTATCGTTACTATCATAATGGGTCGGATCA 5067711 37 100.0 37 GGTCGGATCA ..................................... GCCCGTAAACACCTTATCTTCAATATCTAAAAACCTT 5067785 37 100.0 34 TAAAAACCTT ..................................... GAAAGTGTATTCCATAACTGGATTTGTTGATCGA 5067856 37 100.0 35 TGTTGATCGA ..................................... TTGCTGACTTTGAGATCATAGAATAGCGTGTCCTT 5067928 37 100.0 36 GCGTGTCCTT ..................................... TCTTTTTCTCTTTGAATTTCTTCAATTAACTCTTTA 5068001 37 100.0 34 TAACTCTTTA ..................................... TGAAAAGTAGTATAGGCATAAGCAATGCTATGGC 5068072 37 100.0 34 ATGCTATGGC ..................................... CAGAATTCCAAGCCAAGAAAAAAAAGTCAATCCT 5068143 37 100.0 38 AGTCAATCCT ..................................... AATCCTAGTGCCGGATTGTATTCCCCAGACAGCGGCAG 5068218 37 100.0 ACAGCGGCAG ..................................... GCGTGGTGGA ========== ====== ====== ====== ========== ===================================== 12 37 35 GTTCCAATTAACTTAAATCCCTATCAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.50,-7.40] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [440,2516] Score: 0.18/0.18 # # Final direction: F [4.5,0.18 Confidence: HIGH] >NC_019682 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 5068368 37 100.0 35 AAACTGCTGA ..................................... CGGTGGTGGCGGTGGAATGCGACCCGAAAAAACTC 5068440 37 100.0 32 GAAAAAACTC ..................................... TCCAATGTATGCCAACAAAATCACTAACGAAG 5068509 37 100.0 35 ACTAACGAAG ..................................... TAGAAAATAAAAAGAACCTTCGTCTATAGTACTTC 5068581 37 100.0 36 ATAGTACTTC ..................................... GTAGTAACTGATAAGCAGCCAGGAGGTATATTGAGT 5068654 37 100.0 33 TATATTGAGT ..................................... ATCCACAGCAGGTATATCTTAATCCCACCTCAG 5068724 37 100.0 35 CCCACCTCAG ..................................... AGAGCCGTTGGTTGAGGTGTAACTACCACTGCTTG 5068796 37 100.0 41 CCACTGCTTG ..................................... CCTGCTCTATTTGCGGGTAAAAAAGATGGTGAAGGAGCAAA 5068874 37 100.0 35 AAGGAGCAAA ..................................... AGAAACTTTATCTTCACCAGATAAAAAATAAACAT 5068946 37 100.0 36 AAATAAACAT ..................................... CACGTATTCATACCCATGTTGGGTGATGTTTCCCAA 5069019 37 100.0 35 TGTTTCCCAA ..................................... ACACTCGTTCCTGCGGATATTACTGGATTAATCAC 5069091 37 100.0 35 GATTAATCAC ..................................... CTTTGAAGCCAACGACCGTGACGACTTCACCACCG 5069163 37 100.0 36 TTCACCACCG ..................................... GGTGGTTGACAGTGGCTCGTTGTTTTCTGTCCCAAT 5069236 37 100.0 35 CTGTCCCAAT ..................................... ACTTCTCTTTCATCTCGGCCACCTAGCGCTTTCCG 5069308 37 100.0 35 GCGCTTTCCG ..................................... TTTCGGCATAAGAGGTAATGGCTCTGTCACGCTCG 5069380 37 100.0 34 GTCACGCTCG ..................................... ATCCTTATCGGATATATAATCTTCAGGATTTATA 5069451 37 100.0 33 AGGATTTATA ..................................... ATCTATCAGGATATTTTTTACTTCTTCAACACT 5069521 37 100.0 34 CTTCAACACT ..................................... GAAATAGGTTTGCTTCCCCCAGAACTTTACTCAG 5069592 37 100.0 34 CTTTACTCAG ..................................... TTCCTTATGGATTTGGTAAGCCTTTTGCTTTCCC 5069663 37 100.0 38 TTGCTTTCCC ..................................... ATACTTTGCCTTGATACTTTCGCCGTCGCTCCAAACTC 5069738 37 100.0 43 CTCCAAACTC ..................................... TAGGCGATACCTTGAGCGATCCTAGGGCTTGGGGGTATATTGA 5069818 37 100.0 34 GGTATATTGA ..................................... AACACAGCAACTAGACGAGCAAACAGCATCCCTA 5069889 37 100.0 35 AGCATCCCTA ..................................... TGGAGAAATAGGCTTGACAGACTGAGACGGCACCT 5069961 37 100.0 35 GACGGCACCT ..................................... ATGGCGTTTATCGTCGGTTCAGGAGAATATTTTTA 5070033 37 100.0 34 AATATTTTTA ..................................... TTTGTAGCGCTGGCATTCATCGACTACGAGCATG 5070104 37 100.0 35 TACGAGCATG ..................................... TCCGTACTCATAATCATCTCGGAAAATTTCCCGTT 5070176 37 100.0 36 ATTTCCCGTT ..................................... AAAAAATCTTAGAGAAACTAGGCATCCTCGACTTAG 5070249 37 100.0 38 CTCGACTTAG ..................................... CCATCTGATTTAATCCCAGCAAGCTAGCTATCCGATTG 5070324 37 100.0 35 TATCCGATTG ..................................... TAGCTACGGGCGTGAAGAAGAACCGCAGATTAATT 5070396 37 100.0 36 CAGATTAATT ..................................... TTATTGGGATTCTCACGTTTTTGAATAAAAAAAGTA 5070469 37 100.0 38 AAAAAAAGTA ..................................... AGCAGCCATAGTGTTCCATTACGACAATTCCTAGAAGG 5070544 37 100.0 34 TCCTAGAAGG ..................................... TGAGCCAGTGCCGGGGTATTGATTGTTCCTGATG 5070615 37 100.0 38 GTTCCTGATG ..................................... TCAAAGTTGGGTTTTTCGCTGTAATCCCATCTCTCAAA 5070690 37 100.0 35 ATCTCTCAAA ..................................... GCCGGAAACGCCATCAACAATATCAGTGGGGCTGC 5070762 37 100.0 GTGGGGCTGC ..................................... ATTTTCAAAA ========== ====== ====== ====== ========== ===================================== 34 37 35 GTTCCAATTAACTTAAATCCCTATCAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.50,-7.40] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [1387,875] Score: 0/0.18 # # Final direction: F [4.77,0 Confidence: HIGH] >NC_019682 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3375026 37 94.6 39 ATACTGAGGT -.........T.......................... CTGAATTTGAAAAGTCTCTCAAAGAAGATGAGGGATCTA 3375102 37 100.0 33 GAGGGATCTA ..................................... AATAATTGGCAAAGCCTCATCTTTGACGGGCAA 3375172 37 100.0 37 TGACGGGCAA ..................................... TTTTACTGAAGAGGCTGAACGTGGCTTCACTGATGTG 3375246 37 100.0 35 CACTGATGTG ..................................... TCGCATGTGATCTCCAAGCTCTTTTTCACTGGCTA 3375318 37 100.0 39 TCACTGGCTA ..................................... ATATACTCGTATGCTTCTTCTCTGCTTTCGTACTTGGCT 3375394 37 100.0 34 GTACTTGGCT ..................................... AAGTTTCACGGTTTATTTTGCGGGTTGATATGGA 3375465 37 100.0 36 TTGATATGGA ..................................... TTAGCTAATCTGTCCCTTGATTTCTCTGAGGAAGAA 3375538 37 100.0 35 TGAGGAAGAA ..................................... TTGGCATCAACTTAGTTTGTTGAGTGCAAAATCTT 3375610 37 100.0 43 GCAAAATCTT ..................................... ACGGCAGCATCAAAAGCGATCGCCAAAATGAAGGGCAAGGCTG 3375690 37 100.0 35 GGCAAGGCTG ..................................... TCAAGCGAATAACATTACCATTGTGTTTGTCAAAT 3375762 37 100.0 35 TTTGTCAAAT ..................................... AAGGTGTTGATCCTATCTCTATATAATCTGTAAAT 3375834 37 100.0 34 ATCTGTAAAT ..................................... GCTGTCCATTGCCATTAGTTAAGCAATATGCTGC 3375905 37 100.0 34 AATATGCTGC ..................................... AAGATTTACAGTCTGTGGGCGATCGCCCGGAAAA 3375976 37 100.0 38 GCCCGGAAAA ..................................... CTTGCCTTTTTCTATTTTTAGAGGAGGGGTAGCGATTT 3376051 37 100.0 34 GTAGCGATTT ..................................... CCAAGGTCTGACAGGAAATTAAAAAGATTGCCAA 3376122 37 100.0 35 AGATTGCCAA ..................................... CTGGCTTCTGTACACAGCAGCAAGTCATTGTCTAC 3376194 37 100.0 40 CATTGTCTAC ..................................... GGTGCTGCTATACTTGGTTGGTAAGCAGGTAGTCCGTAGT 3376271 37 100.0 AGTCCGTAGT ..................................... GCCCGCATCC ========== ====== ====== ====== ========== ===================================== 18 37 36 GTTTCAATCCCTGATAGGGATTTAAGTTAATTGGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.40,-7.50] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [47,255] Score: 0.18/0.18 # # Final direction: R [0.27,5.09 Confidence: HIGH] >NC_019682 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 6528939 37 100.0 33 CTCGCTGAAA ..................................... TTAAAGCAGAGTTTCGTCATAAGGATAAATCCT 6529009 37 100.0 34 GATAAATCCT ..................................... ATTCTGTGCAATTTGATTGTTTGGGGTGTAACTG 6529080 37 100.0 38 GGTGTAACTG ..................................... ATAGATGGTGAGTGGTTCCCGTGTGAGGGAATCATGCT 6529155 37 100.0 41 GAATCATGCT ..................................... TTGATAGCTTTTGTAGCGCGCTGTTGTCAGAAAAGTATCCT 6529233 37 100.0 34 AAAGTATCCT ..................................... ATAACTCTGGAGTCCAGGGATACGCCCTAAGATT 6529304 37 100.0 35 CCCTAAGATT ..................................... ATATTGGAGTTTGCGCGATCGCTGGATAACGGTTT 6529376 37 100.0 42 ATAACGGTTT ..................................... AGGCTTAAAACATGGCTGTCACAGCAAGGAGCAATTTAAAAA 6529455 37 100.0 35 AATTTAAAAA ..................................... AGGTGAGGTTGTATGTTGGTAAGCTGCGATATAGC 6529527 37 100.0 35 GCGATATAGC ..................................... TATATGAGATACTGACTTCATCCGCGCTACCTGAG 6529599 37 100.0 35 GCTACCTGAG ..................................... AGTCCTGCTATGAGCGTTTACGCTACGTTTTATCT 6529671 37 100.0 38 CGTTTTATCT ..................................... TCTGCAAGACAGTTGAAAAACAGAGCGGCACCCACTAT 6529746 37 100.0 38 CACCCACTAT ..................................... TTATAACATTCAGTAAGTGTACTGAGTGCAACAAGTAT 6529821 37 100.0 35 CAACAAGTAT ..................................... TCTTTTTCGATCCTTATCTGTGGTGTAATCTGTGT 6529893 37 100.0 35 TAATCTGTGT ..................................... ATCTAGAGAAAGAGCTTAAGGATCTAGGGTTGGAC 6529965 37 100.0 33 AGGGTTGGAC ..................................... ACAAAATGACATACTGGACTGCGGCTTGAAGAT 6530035 37 100.0 36 GCTTGAAGAT ..................................... AAGAACTACTCGAAGACCTTGTTTTTTGGAAAGAAA 6530108 37 100.0 34 TGGAAAGAAA ..................................... TCTTTGCTACAAGGTAATCACAGAAGCTTACCCC 6530179 37 100.0 34 AGCTTACCCC ..................................... TATTGAAGCTGGGTACGTTGTTGCTAACAGTGTA 6530250 37 100.0 39 TAACAGTGTA ..................................... AATTTGATACTTTCTACTTCCCCCTTTAGTCGCCCCCCA 6530326 37 100.0 41 TCGCCCCCCA ..................................... CAGTGAATTGAGTGTGAACAACATGCACAGTATCAAGCTCA 6530404 37 100.0 34 ATCAAGCTCA ..................................... TCCAAGCGGTAGTCATCGCCCTGCAAGTATTAGT 6530475 37 100.0 33 AAGTATTAGT ..................................... GCAGCTGCCACTAGCGGAGCAGTGCCAAGCGGG 6530545 37 100.0 35 GCCAAGCGGG ..................................... AGTATTGCTCTCGCAGCTCATGAAAACCACCATCA 6530617 37 100.0 35 ACCACCATCA ..................................... TATCAGCCCAGCGGTGCCCAGGGCGAATATGCGGG 6530689 37 100.0 37 AATATGCGGG ..................................... TCAGTGCGTGCAGTATTGATGGCTCTTTTTTTGGTTG 6530763 37 100.0 36 TTTTTGGTTG ..................................... GATTTTCCTGCTCTTTCGCCCAGCTTATCCAAGCGC 6530836 37 100.0 42 ATCCAAGCGC ..................................... TTAGCTTCCATTCCAGATTTATTCTGTGAATATGTTTTGCCT 6530915 37 100.0 38 TGTTTTGCCT ..................................... TCCCCTGCCTGCATCCCCTTCTTTTCACTACCAAAATG 6530990 37 100.0 34 TACCAAAATG ..................................... CCGTAGCTTTGTGAGCTATCGATTTGCACTAGAA 6531061 37 100.0 31 TGCACTAGAA ..................................... CTTAAGGTATTTAAAAACATTCTGTGTACGC 6531129 37 100.0 34 CTGTGTACGC ..................................... ATGCTAATGAGTAACATGGGATATCAGTACCAAA 6531200 37 100.0 37 CAGTACCAAA ..................................... TTTGCAACACATCTTTAAAGCTAGCCACAGATGACAT 6531274 37 100.0 33 CAGATGACAT ..................................... GAGGAAGTCTGGGAGATTATGGCAAGGAAAAAA 6531344 37 100.0 35 AAGGAAAAAA ..................................... AATACTCAAGGTTCAACCCAAGTCTGGTAGCAACG 6531416 37 100.0 36 GGTAGCAACG ..................................... CCCTGGCTTGCAAACTTTCTTCTTAGCAGTTGTACT 6531489 37 100.0 37 CAGTTGTACT ..................................... CTCGCAGAGCAAGGCGAAATCACAGAAGATTTTAAAG 6531563 37 100.0 33 GATTTTAAAG ..................................... CCTTCTATTAGCAGGTTAAGATTTATGATGGAA 6531633 37 100.0 35 TATGATGGAA ..................................... CTCCTTCCAGAAAACAAGGTCTTCAAGCAGTTCTT 6531705 37 100.0 38 AGCAGTTCTT ..................................... GTAATAAGATAAATTCTCTTGTCACTGCTATCTATTTA 6531780 37 100.0 35 TATCTATTTA ..................................... ACCTGTATGTTAAATCTGTTTCTACAGCTGCCTCA 6531852 37 100.0 41 AGCTGCCTCA ..................................... TAAGGACAACTTTTGCAAGCAACCTTGATGTACTTCTCCCA 6531930 37 100.0 ACTTCTCCCA ..................................... CGCCAGCAT ========== ====== ====== ====== ========== ===================================== 42 37 35 GTTTCAATCCCTAATAGGGATTTAAGTTAATTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.40,-7.50] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [44,976] Score: 0.18/0.18 # # Final direction: R [0.27,4.68 Confidence: HIGH] >NC_019682 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 815670 37 100.0 36 GACGCCATGA ..................................... AAAAACTTGCTTGAACCCCTGCTCATTCGCCCCCCA 815743 37 100.0 38 TCGCCCCCCA ..................................... GCTTTCATAGCACCACGAAGTTTCCACCCTGTTTTTAG 815818 37 100.0 35 CTGTTTTTAG ..................................... GGATAGAGACTGGAATGCTGCTCGGAATATATTAG 815890 37 100.0 35 AATATATTAG ..................................... TTGCTGCTAACATCATCAAGCTTTTCAATAACAGA 815962 37 100.0 34 CAATAACAGA ..................................... GTAACATTACTGCAAAACTAGCTTGTGACATTGC 816033 37 100.0 40 GTGACATTGC ..................................... AGATTTGGGAGGAATCCCGATCTAAGTGAGTTGGTCAAAG 816110 37 100.0 35 TTGGTCAAAG ..................................... AATCGCGATCGCAGACATAGACTATTTGACTCCAG 816182 37 100.0 37 TTGACTCCAG ..................................... AGCTTGAGTGGCAGCCCAGGTGCAGCAGGGTATGCAG 816256 37 100.0 42 GGGTATGCAG ..................................... AAAGGAATTCGAGACAGAAGCAGAATGTGAAGCAGCCGCAAG 816335 37 100.0 42 CAGCCGCAAG ..................................... AGTAGCGTTTACAGGCATGTAAATCCTCGGAACGAACTTATC 816414 37 100.0 34 CGAACTTATC ..................................... AACGACGACTAGCTTGCCGAGTCTTACGCGCTGA 816485 37 100.0 35 TACGCGCTGA ..................................... TCACTACTGTAAAAGCTATAAGCAAAAACCTTGCC 816557 37 100.0 33 AAACCTTGCC ..................................... TACATTTGTGGCAGCCAGCACTGCCACAGCAGA 816627 37 100.0 35 CCACAGCAGA ..................................... TAGCGAACCGCCGCGAATCAAAGCGATCGCTCAAC 816699 37 100.0 39 ATCGCTCAAC ..................................... TTGGCAGCAGCTGCGGGAGTTGGGGGAGATGTGGCGCTA 816775 37 100.0 35 TGTGGCGCTA ..................................... AATCACCACATAGCCTTGTGCCCTAGCTTGTCGCT 816847 37 100.0 36 GCTTGTCGCT ..................................... GATGTTGGAAAGCTCAAGTATTTCTTGCTCGCTAAA 816920 37 100.0 40 GCTCGCTAAA ..................................... ACCGAGATTTACGGCGACCACTATGAGGAAGTAGAGCAGG 816997 37 100.0 36 GTAGAGCAGG ..................................... AGTGAAGCAAATAAAACTGTTGTTAGTCGCCCCGAA 817070 37 100.0 TCGCCCCGAA ..................................... GCCTAATTCT ========== ====== ====== ====== ========== ===================================== 20 37 36 GTCACAATTAACTTAAATCCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.50,-7.40] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [675,214] Score: 0.18/0.18 # # Final direction: F [4.68,0 Confidence: HIGH] >NC_019682 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 980659 35 100.0 42 TAACAGTAGA ................................... CCTTGGGTGTCCACTGAAGCGCTGCCATTAATGGCAAACGCT 980736 35 100.0 36 GGCAAACGCT ................................... ATTTCCTTGGGTTTCTCCAGAATTTTTACTCGTCAA 980807 35 100.0 42 TACTCGTCAA ................................... GGTCTTCCCGTTTTAGGGAAGTGCGAGTTAGCACCCTCTTGG 980884 35 100.0 39 ACCCTCTTGG ................................... GCTTTTAATGAAGCCGGAAATGATGCAATCTTTTGAGGT 980958 35 100.0 39 CTTTTGAGGT ................................... GTGATACCACTTTGCAAGAAGTTACCCAAATCGGTTAAA 981032 35 100.0 39 ATCGGTTAAA ................................... TCTTGCGCTACTTTGCATCCACATCTTTTTGTGTTTGAA 981106 35 100.0 42 TGTGTTTGAA ................................... TGTTGGTAATCAAAAAGGGGAAACTAATTCAAATACTAAGGA 981183 35 100.0 43 ATACTAAGGA ................................... TTTTGCCAACAGTGCAAGTGCATCAATTGATTCAGAAAGAATA 981261 35 100.0 40 AGAAAGAATA ................................... TAGATAAGTACACCTTTGATTTCATTTCCATCTAGCAGTA 981336 35 100.0 35 TCTAGCAGTA ................................... CAGCTACTGAACTTCGGTTGTTGTAGTTTTTTTGA 981406 35 100.0 37 GTTTTTTTGA ................................... TTTCGAGCCAGTGGGAGTAAAATCAAATCTTACTTTC 981478 35 100.0 38 TCTTACTTTC ................................... ATTAGTTATTGACAACCGCAACTCCATTGGCTGTCATC 981551 35 100.0 37 GGCTGTCATC ................................... TGAACTACCAGAAAAATTAGAGCTATCAAAGAAAGAG 981623 35 100.0 42 AAAGAAAGAG ................................... CCTTGGTTGCTGGCAGTCCGTCCAAACGCAATTCCTGCATTG 981700 35 100.0 41 TCCTGCATTG ................................... CGCTCTGATTTGTAGCTAATTCACCTCTTGGTTGTGCAGGG 981776 35 100.0 40 TTGTGCAGGG ................................... TCTCTCATAGCAACTATATGTAATAGTTGTAGGTGTACGA 981851 35 100.0 35 AGGTGTACGA ................................... AAGTTCAACACTATTCCCAACGCAATCATCCACTT 981921 35 100.0 39 TCATCCACTT ................................... TTTCCTCGAATACCCGAGCTATAGAGAAATGATGTAAGT 981995 35 100.0 TGATGTAAGT ................................... AAAATAGCAT ========== ====== ====== ====== ========== =================================== 19 35 39 GTTTTAATTCCTTTACCCCTCACGGGGATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.29%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [56.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [331,950] Score: 0.18/0.18 # # Final direction: R [0,0.82 Confidence: HIGH] >NC_019683 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 814831 25 100.0 44 NNNNNNNNNN ...G..AA....CC.G......... GCTTAATCTCGGCTCTAACCAAATAAAAAAGATACCTGACTCCT 814900 25 100.0 44 NNNNNNNNNN ...G..AA....CC.G......... GCTCAATCTTAGCCACAATAAAATAGAAGAGATTCCCGATTCCT 814969 25 100.0 44 NNNNNNNNNN ......................... ACTCTATCTTTACAACAATCCAATCAAAGAAGTGCCTGACTCCC 815038 25 100.0 44 NNNNNNNNNN ......................... GCTTGGTTTCAGCTCTAATCAAATAAAAGAGATTCCCGATTCCC 815107 25 100.0 1 NNNNNNNNNN ......................... NNNNNNNNNN ========== ====== ====== ====== ========== ========================= 5 25 44 TCGCCACTTTAGTTAATCTCCAACA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [1027,2386] Score: 0.18/0.18 # # Final direction: F [0.27,0.18 Confidence: LOW] >NC_019684 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1073074 37 94.6 40 AAACTTGACA ........A........A................... TCTCGTCACTACTTTCTTGGATTAACAGATTAATTTCATT 1073151 37 100.0 36 TAATTTCATT ..................................... AATACAGAACCAGAAGTGGCAGTAATGGAAATTAGC 1073224 37 100.0 36 GGAAATTAGC ..................................... ATCCAGAAGTCTTAAGCCTGTTGGTACAAAGCTCTT 1073297 37 100.0 32 CAAAGCTCTT ..................................... ACCCATCAGGGGCAATGCTTTCTACTAAATCT 1073366 37 100.0 33 TACTAAATCT ..................................... GATTGATGGCAGCAGTAAATTCATCGCTTATTT 1073436 37 100.0 35 TCGCTTATTT ..................................... CTTGGCTTGTCAGAGGGGCAAGTGGAAGGGCTTGC 1073508 37 100.0 34 AAGGGCTTGC ..................................... TTGTATCTACGAGATTTTAATCCATTAATAATCG 1073579 37 100.0 38 TTAATAATCG ..................................... CCGACAATAGCACCGGGTTCCCGGCTTGGTATCTTTAC 1073654 37 100.0 40 GTATCTTTAC ..................................... AATGGTGGTTGATAACGGCACCCCCCTTACTCCCGCCGCC 1073731 37 100.0 36 TCCCGCCGCC ..................................... GTGAGGGCGAGGAGAGGGGGGGTTAAGGCTTTGATC 1073804 37 100.0 35 GGCTTTGATC ..................................... AGAAGCATCATCTTTTGGGCGGACACCATACTTAA 1073876 37 100.0 35 CCATACTTAA ..................................... GCTATCACTGCCAGAAGCCCAGTCAATTGCAACTT 1073948 37 100.0 36 ATTGCAACTT ..................................... AAGGGTGAGATTCGGCACTATCTCAGAGATAAGGCT 1074021 37 100.0 32 AGATAAGGCT ..................................... GTTTGTTCTAGCTTGTTGTTTGGTTTGGTCAT 1074090 37 100.0 36 GTTTGGTCAT ..................................... ACCCAAGCCAGCACCAACAAATGTACCAGAAGCAGT 1074163 37 100.0 42 CAGAAGCAGT ..................................... TCACCAAATAGCGATCGCCGCTTTGTCTGCTTTTAACCAACC 1074242 37 100.0 37 TTAACCAACC ..................................... GCGTATTTGCGTAAAAGTTGACCAACACATGAGCCAT 1074316 37 100.0 35 CATGAGCCAT ..................................... GGTTATCAGTTATCAATCATCGGTCATGGCTTGAT 1074388 37 100.0 34 ATGGCTTGAT ..................................... TTTTCATCTAAGACGGCGATCGCTGCATTCACTG 1074459 37 100.0 40 GCATTCACTG ..................................... CTTACCTCTGCATCTTTCGCAAAGTCATACAAGTTTATAT 1074536 37 100.0 38 AAGTTTATAT ..................................... ATTTGGGGCTGTGTCATTAAATTCGGTCGGATACCGTC 1074611 37 100.0 33 GGATACCGTC ..................................... CCCTGCTACTTTCTCAGTAAATGGGGATTCAAA 1074681 37 100.0 37 GGGATTCAAA ..................................... GAGTGAGGAGGGGGTGGCGAGTTTCGAAGCCACCGCC 1074755 37 100.0 32 AGCCACCGCC ..................................... CCTGGATGTGCGCGATCGCACTCTCCGGAAAA 1074824 37 100.0 41 CTCCGGAAAA ..................................... TCTGAGCGCAGTTGTTTAAGTTTGGCCTCCTCATGCTGTAA 1074902 37 100.0 33 CATGCTGTAA ..................................... GTTTCTGGGCAGAAGTACAAGCGCATTGCTCAG 1074972 37 100.0 40 CATTGCTCAG ..................................... ACCGCATCGTCCAAGGCTCTGCCACCGCAGCCCCCGTTAA 1075049 37 100.0 36 CCCCCGTTAA ..................................... TACCCAAGGTCAGCCTAGAAGTCCTGATGACACAGC 1075122 37 100.0 36 ATGACACAGC ..................................... CCTAGAAGATCCGATGGCTCCTAATGGTCAGATCGT 1075195 37 100.0 35 GTCAGATCGT ..................................... TGGGCTTTGCGTTTAAGAAAAGATGTACGTGGTCA 1075267 37 100.0 36 TACGTGGTCA ..................................... TGCTGTTGGCCAACAAGTTTACGCGCTCCGTTGGAA 1075340 37 100.0 41 TCCGTTGGAA ..................................... CACTAATCGCTAGTAGTTGAGTTTTCAAGGTACAGTACGGT 1075418 37 100.0 38 ACAGTACGGT ..................................... CTATATTAGTGAGTTAGATCAGAAATTAGTAGATAGAG 1075493 37 100.0 43 GTAGATAGAG ..................................... CAGAAATCTCCTTAAAGGAGATGTTGGCGGAGGGTGTAATCAA 1075573 37 100.0 41 GTGTAATCAA ..................................... AAAAGCCTACCGCTACCGTTTTTACCCAACTGCCGAGCAAG 1075651 37 100.0 38 GCCGAGCAAG ..................................... CCCAGTCCTTACTTAATAGAGGGGGCAAAATATCCCGT 1075726 37 100.0 35 AATATCCCGT ..................................... AAAACGCGAGAACTTATTACAGTCGCCAACATCAA 1075798 37 100.0 34 CCAACATCAA ..................................... GATGAATCCAGACATCTCCGGGCAATTTAAAAGG 1075869 37 100.0 35 ATTTAAAAGG ..................................... AATACTTGGCACAACGAGCATATTCAACTTCAGTT 1075941 37 100.0 37 AACTTCAGTT ..................................... AACACAAACAGTTCGAGCCTCTGGGCTGGCCTACAAA 1076015 37 100.0 34 GGCCTACAAA ..................................... ATTACAGAGAGATAGAGGAGTTATAGAGTAATGA 1076086 37 100.0 36 AGAGTAATGA ..................................... ACTAATTACTGATTCTGATGAATTAGAACAGGTATT 1076159 37 100.0 35 AACAGGTATT ..................................... TAATTAACTACAGGCTTAGACCCGGTATTCCTGAT 1076231 37 100.0 42 TATTCCTGAT ..................................... TTTGGTGGTTTTCCAGGAGTGACACGCGATCGCGGTTAAGGA 1076310 37 100.0 37 CGGTTAAGGA ..................................... TCTCCTCTCCCCTCCAGTCCTTTCCCCCCTCCAATAG 1076384 37 100.0 36 CCTCCAATAG ..................................... AGCAGCTAAAAAATTAGCCAGTGCAGGTAAGGATAT 1076457 37 100.0 35 GTAAGGATAT ..................................... AAGTATCGTTGCAGATCGTCAATTCGACTTCCCAA 1076529 37 100.0 38 GACTTCCCAA ..................................... TTTAAGGAAGTTCCTAAATTGGTGATATATCCTTCTAA 1076604 37 100.0 34 ATCCTTCTAA ..................................... TCCTCACAGCCTGATTATGTCTAACTTTGTCAAT 1076675 37 100.0 37 CTTTGTCAAT ..................................... CTCACGCGCAATTAAAAGCCAGATGTGCTGGATTTCA 1076749 37 100.0 CTGGATTTCA ..................................... CGCCGGAGGC ========== ====== ====== ====== ========== ===================================== 51 37 36 GTTTCAATCCCTAATAGGGATTAGTTGAAATTGCAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.30,-7.30] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [114,213] Score: 0/0.18 # # Final direction: R [0.27,4.91 Confidence: HIGH] >NC_019684 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2597398 37 100.0 36 GGCTGCCGCT ..................................... CACAACACAAACAGTTCGAGCCTCTGGGCTGGCTTA 2597471 37 100.0 35 GGCTGGCTTA ..................................... TTCAGCGTGATTATGTGATCGATCAGTTACGATCC 2597543 37 100.0 35 GTTACGATCC ..................................... CAAATATAGTAAATGAACTATCTAGCACTCGGACT 2597615 37 100.0 33 CACTCGGACT ..................................... AAGCCATTTTTACTTTCCGCGTAGACCCCTATT 2597685 37 100.0 34 GACCCCTATT ..................................... AACTAATCGATTTGTACAGCCACCCGGTTGAGTT 2597756 37 100.0 36 CGGTTGAGTT ..................................... TTAGAAATATTCACCAAGTACGGCGGCTCTGCTCAA 2597829 37 100.0 36 CTCTGCTCAA ..................................... CACTGATTGATAACTTGGCTTAAACCTCCTATAGTT 2597902 37 100.0 34 TCCTATAGTT ..................................... ACTTGAATGTCGTTGTTTGTTTGCTGTGCTGTTT 2597973 37 100.0 36 TGTGCTGTTT ..................................... TACCCACCTGATTGGGTAGGTATTCAAGAAATGAGA 2598046 37 100.0 34 AGAAATGAGA ..................................... CGGATGTCACATAGATAGATGATTCATTTGTCGA 2598117 37 100.0 35 CATTTGTCGA ..................................... TCAGGCTGGATAATCCATAAACCTTTACGCTTACC 2598189 37 100.0 42 TACGCTTACC ..................................... AACTTACTTAAAAGCTTAGATTTTGCTGTAACCGATGCCAGC 2598268 37 100.0 43 CGATGCCAGC ..................................... CTTTAACTTAACTCAGATGCCCTTAGCGGTTAAAGGCTACCAG 2598348 37 100.0 34 AGGCTACCAG ..................................... AATCACGCCAGTGATTGGGATTGGGTACTGGGGA 2598419 37 100.0 GTACTGGGGA ..................................... AAAATTTAAA ========== ====== ====== ====== ========== ===================================== 15 37 35 ATTGCAATTTCAACTAATCCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.30,-7.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [379,2723] Score: 0.18/0.18 # # Final direction: F [4.5,0.45 Confidence: HIGH] >NC_019684 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2598585 37 100.0 35 TGCTTAAATA ..................................... CCCTTACTATACCGTATCGATTGATGGCAGAGGGG 2598657 37 100.0 34 GGCAGAGGGG ..................................... TTCCCCAGAGTATTTACCGCTTCTTGACTCTACA 2598728 37 100.0 35 TGACTCTACA ..................................... TAAAGCTAAACGCTATATTACTAAATTTGAACTAA 2598800 37 100.0 35 TTTGAACTAA ..................................... CTGCACTTACACCGCCTTGATTAGTGATGCCGATG 2598872 37 100.0 35 GATGCCGATG ..................................... ATCAGCTATGGTTCCCCCGATTCTCGGATTGATGG 2598944 37 100.0 32 GGATTGATGG ..................................... AGTGGTGAGAGGAATGGAGGGGGAATTAGGAA 2599013 37 100.0 GAATTAGGAA ..................................... AAGTAGTTGAC ========== ====== ====== ====== ========== ===================================== 7 37 34 ATTGCAATTTCAACTAATCCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.30,-7.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [1566,2129] Score: 0/0.18 # # Final direction: F [4.5,0.27 Confidence: HIGH] >NC_019684 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2599168 37 100.0 36 CGTCTAGCGA ..................................... AATCAGCTATTCAACCTGCTGCACCTGAACAGGCAG 2599241 37 100.0 39 GAACAGGCAG ..................................... TGATTCACCACGGGAGGCAAATTTTTTAATAACGACAAG 2599317 37 100.0 39 TAACGACAAG ..................................... ATCTGGATAATTTACTGCATCCTTAGCTGCACCGAATTG 2599393 37 100.0 37 CACCGAATTG ..................................... AAGCTGCTCCTCTGCTTTTCGCAGCAATGAAAAGTAA 2599467 37 100.0 41 TGAAAAGTAA ..................................... GGTGTGCCACTGGCGGCCAAGTTTTTCACACACTCGCCCCG 2599545 37 100.0 35 ACTCGCCCCG ..................................... TAGGGCTTCTCGCAACATTTCAATTGCTTGTTCTA 2599617 37 100.0 41 GCTTGTTCTA ..................................... CCCAAAGATACCAACAAGAGCATTAAAATCAATGCTTGCGG 2599695 37 100.0 38 ATGCTTGCGG ..................................... GTAGAATTAATCGCAGATAACCCAGATGTAACCCTAGA 2599770 37 100.0 36 TAACCCTAGA ..................................... GAAAATAATATCACCAGAATCAAGGGTGATATGGCA 2599843 37 100.0 38 TGATATGGCA ..................................... GGGGAAGTCCAGCACTGTGCTGAAGTAATCCACCCACG 2599918 37 100.0 37 TCCACCCACG ..................................... ACGGCGGCGGGGGTGGGGGTAGAGGAGGGACTACAAC 2599992 37 100.0 40 GGACTACAAC ..................................... TTCTCGATACGCTAGCGCAGGCGTTGCTGTTTGCCCTCGA 2600069 37 100.0 34 TTGCCCTCGA ..................................... CTAAAGACGCTCAGATGGTGCAGGGGCGGATTAA 2600140 37 100.0 35 GGCGGATTAA ..................................... TTGCGCCATATCGAGCAGGGGGTGGAAACCTACGA 2600212 37 100.0 34 AAACCTACGA ..................................... ACCCACGTATCCAGTGACACGCTCAGTTTCAGAA 2600283 37 100.0 33 AGTTTCAGAA ..................................... ACGCCAAAAAGGTAGAAGGAACAACTATTGGTA 2600353 37 100.0 35 ACTATTGGTA ..................................... CTGCTGCTAAGGCTTCCCCCATATACTTTTTAATA 2600425 37 100.0 CTTTTTAATA ..................................... GTTTAATTGC ========== ====== ====== ====== ========== ===================================== 18 37 36 ATTGCAATTTCAACTAATCCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.30,-7.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [2149,717] Score: 0.18/0.18 # # Final direction: F [4.68,0 Confidence: HIGH] >NC_019684 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2600498 37 100.0 45 CGTCCTCTGC ..................................... GCTCACATTCCCCGTCACCTCCCCGATGTGGGATAAGGGAGATTG 2600580 37 100.0 37 AGGGAGATTG ..................................... AAGCTAGCCAGTTTTATTGGCGAAAAATGTACTATTT 2600654 37 100.0 35 TGTACTATTT ..................................... GGGCGACTTCCTCCCCTTGGGGGGAAGTGGTAGCT 2600726 37 100.0 35 AGTGGTAGCT ..................................... CTAGCCCTTAGCCCCCGCCAAATTAGGGAGCTAAC 2600798 37 100.0 34 GGGAGCTAAC ..................................... ACATTACAGGAGTTAGTTGAACTCCGTGGGGAAT 2600869 37 100.0 39 CGTGGGGAAT ..................................... CGGCTGCGCCCAAAAAGATGCTTTGTTCCAATTCCTTAA 2600945 37 100.0 AATTCCTTAA ..................................... ATTAATGCTA ========== ====== ====== ====== ========== ===================================== 7 37 37 ATTGCAATTTCAACTAATCCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.30,-7.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [3479,197] Score: 0.18/0.18 # # Final direction: F [4.68,0.27 Confidence: HIGH] >NC_019684 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2915314 37 100.0 34 GGCTGCCGCT ..................................... TAGACGATTCGGAACTACTCATTTACTCCCCCTG 2915385 37 100.0 35 ACTCCCCCTG ..................................... GTACCTTTTGTAACGAGTGCCGGGCTTTTGGTTAA 2915457 37 100.0 35 TTTTGGTTAA ..................................... CTAAATATCCCAACTTCAAGTCTAAACATGGTAAG 2915529 37 100.0 35 ACATGGTAAG ..................................... CGCTGTCTTCTTTTGCTTCTATCCATTCCCCTACT 2915601 37 100.0 41 TTCCCCTACT ..................................... TAATCTCTAATCTTCTAATCCTGCTAGGTGTGAAATCGCGC 2915679 37 100.0 32 GAAATCGCGC ..................................... AGCAAACAAGTTGAAACTAGATACGCTGACAG 2915748 37 100.0 33 ACGCTGACAG ..................................... GTTCTGAGCTATCGCATTCTATTTCTTGAAAAG 2915818 37 100.0 41 TCTTGAAAAG ..................................... CTGGAATGATTGGATTTGTAGAATGTTTCCGGCTGATAGAG 2915896 37 100.0 36 GCTGATAGAG ..................................... TTAGTATTGCTCTTATTTCTTCTTGGTCGTTCTCGC 2915969 37 100.0 32 TCGTTCTCGC ..................................... ACCATCAGGCATCGGCATCGGTACCCACGCGC 2916038 37 100.0 38 ACCCACGCGC ..................................... AGCAGTACCGATTAAAAGTGAACGTCTCCCCCTCTTTA 2916113 37 100.0 40 CCCCTCTTTA ..................................... GCCTTAATCCTAGACACGGAGATTAATCGGCTGATTACTA 2916190 37 100.0 40 CTGATTACTA ..................................... TTGCTGGGCGAAGCTCTGATGATTTGGCAATAATATCAGC 2916267 37 100.0 33 TAATATCAGC ..................................... GCATCTTAAACGCCAAATCAACAACAGTTAGTT 2916337 37 100.0 35 ACAGTTAGTT ..................................... AATAAGTCTACATAATACTCAAAAGCATTAGCATT 2916409 37 100.0 37 CATTAGCATT ..................................... TTCATACTTGGGGCGAAAACTTGTGCAGACTACCTGG 2916483 37 100.0 36 GACTACCTGG ..................................... GATATCCCTTTGGCAGATAAACCAGCCTGATCAACC 2916556 37 100.0 38 CTGATCAACC ..................................... GATTAGCTGGTAGATGGGAGCATCAAGGCAGTATTTTC 2916631 37 100.0 34 CAGTATTTTC ..................................... AAGGAATTTTTAATCGCATTTGCCATTTTACAGG 2916702 37 100.0 38 ATTTTACAGG ..................................... CATGACTCTGATAGATACCCTGAGACTGAGATTACAGA 2916777 37 100.0 40 AGATTACAGA ..................................... CTAGGTTAACCCGTGTGAGGTTGATAACATCCGAGGGTAC 2916854 37 100.0 35 CCGAGGGTAC ..................................... ATGGATTCAGTTCTAGTTACTTAAAAGAACCTTGG 2916926 37 100.0 39 AGAACCTTGG ..................................... TGGAAGTAAAAGTTTTAACAATAGACGGAGACGAGGAAT 2917002 37 100.0 35 GACGAGGAAT ..................................... TTATACATACTGCACTTACAGGTAAAGAACTCATT 2917074 37 100.0 35 AGAACTCATT ..................................... TATCAGCCCACTGCGCGATCGCTTCCAGTTGAGGA 2917146 37 100.0 34 CAGTTGAGGA ..................................... GGGTATTCCATCTAGAAAACTGAATGAGAGAATA 2917217 37 100.0 36 TGAGAGAATA ..................................... AATCATTGCTCGCTCTCCTCAAAAATTACAGTTAAA 2917290 37 100.0 35 TACAGTTAAA ..................................... AGAGCCTGGGGCAATGATGCCGATGCCCTCGCCGC 2917362 37 100.0 34 CCCTCGCCGC ..................................... TTTGCTCGTTTCTAGTATCTAGTGGATCTTCCCA 2917433 37 100.0 34 GATCTTCCCA ..................................... TTCCTTGACCTTTGCAACCTTCTTGGGTGCAGGT 2917504 37 100.0 37 GGGTGCAGGT ..................................... CAGCAGCATTAACACTGTTCCGCTCACAGGGACAGCA 2917578 37 100.0 38 AGGGACAGCA ..................................... GGCATTGTCCCTCAAGGTATTTGACTTAGCTAGTCGCG 2917653 37 100.0 35 GCTAGTCGCG ..................................... CAATTCCTTCCTTGGGATGCAGTTGAGTCTGACAT 2917725 37 100.0 39 AGTCTGACAT ..................................... ACCCCATCTTTAAATGCTTTGAATTCGGTTTGGCAATTG 2917801 37 100.0 35 TTGGCAATTG ..................................... CGGGTTGAAATTTGTAGGGCGAATTTCTAATAGAA 2917873 37 100.0 41 TCTAATAGAA ..................................... TAGCTATAGCCATAGCAGGGGTTGGAATTTTAGGTCAACGT 2917951 37 100.0 35 AGGTCAACGT ..................................... AAAAAATTCTTAGAGGATGAAAATCATGAAATTTG 2918023 37 100.0 38 ATGAAATTTG ..................................... AGGATGAATTGGTACAAGGGTGACGAAAATGTTTCAAG 2918098 37 100.0 38 ATGTTTCAAG ..................................... AACCTCTGTACTAGCACTAGCACCGCTTGCGGAAAGGG 2918173 37 100.0 32 GCGGAAAGGG ..................................... TTACCACTGCCACGCCTGCCTAAAAAATAAGG 2918242 37 100.0 38 AAAAATAAGG ..................................... TTAATGTGGGTTAGTACGTATGTTTCAGTCCATTCCTT 2918317 37 100.0 35 TCCATTCCTT ..................................... AATTCCAGGCTTCATTCCCACTGACTCGGTAATTG 2918389 37 100.0 35 TCGGTAATTG ..................................... CAACCAGCATTAACACGCATTGAATCAAAAGTTGA 2918461 37 100.0 35 CAAAAGTTGA ..................................... CAAACAACTAAATTCATAGTAACAACGTTGGTATA 2918533 37 100.0 39 CGTTGGTATA ..................................... ATTTGATTTTTGTATTCTTCAAACTTCATTTTGTACACC 2918609 37 100.0 35 TTTGTACACC ..................................... AAGCCAGGGGCGAAGGAGAAGCTAGAGGCGATCGC 2918681 37 100.0 35 AGGCGATCGC ..................................... TGACATACACCCGATGCCGCAGCCGATACGGTTTG 2918753 37 100.0 34 ATACGGTTTG ..................................... TCTACCAGCCTTGAAATAACTCCCAAGACTTGTG 2918824 37 100.0 35 AAGACTTGTG ..................................... TTCAACGTACCGAGGCACAGGCTTATCTGCGTCAG 2918896 37 100.0 TCTGCGTCAG ..................................... ATAGAAATTT ========== ====== ====== ====== ========== ===================================== 50 37 36 ATTGCAATTAACACTAATCCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.30,-7.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [51.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [291,127] Score: 0.18/0.18 # # Final direction: F [4.68,0.27 Confidence: HIGH] >NC_019684 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 996949 37 100.0 37 GTTCTTCTAC ..................................... TTCCGTGTGGGTTCCCGTGGAAGGAACTATCACCTTA 997023 37 100.0 37 TATCACCTTA ..................................... GCAAACATCGTATGGTGGACATCGGGATTTACGCTCA 997097 37 100.0 35 TTTACGCTCA ..................................... AACATTATATACTACTAAAGTTCAGTACAGTATGA 997169 37 100.0 33 TACAGTATGA ..................................... TACCACCTTTCGTCAAGCCATCCATAATTTAAA 997239 37 100.0 34 ATAATTTAAA ..................................... CTTCTTACTTCGTTTCAACTGCTGGCAATATCTC 997310 37 100.0 37 GCAATATCTC ..................................... CCTATACTCGTCTGAGATAAAACTAGCCATTAATTAA 997384 37 100.0 34 CATTAATTAA ..................................... CATTAACTTTGGGGTCAATTCGGTATTTTTCATC 997455 37 100.0 34 ATTTTTCATC ..................................... AATCAGCATCTCAGCCCTCATCTGTCCACTACTG 997526 37 100.0 35 TCCACTACTG ..................................... TATTTACTGCTGTTGCTCAAGCTGCCCGTGTTTAC 997598 37 100.0 35 CCGTGTTTAC ..................................... TACCGCATACTACATCTGCATGAGTGCCTCTACAA 997670 37 100.0 40 GCCTCTACAA ..................................... TTTACCTGATGCTGATTTGTTTGCTTCCCTAATAGGAATT 997747 37 100.0 35 AATAGGAATT ..................................... GCCATTTACGCAGCTAGGCAGAGTTTGTACAGCAA 997819 37 100.0 32 TGTACAGCAA ..................................... GCCAAAGGTAAAGTAATGGTGTCTGCCATTGA 997888 37 100.0 36 CTGCCATTGA ..................................... GAAAAAATCAAATTCCAGTCAAGTACCTTTCGTTAC 997961 37 100.0 34 CTTTCGTTAC ..................................... TGAAAAAGAGGGGAAAGGAGTGGACGATTTTATT 998032 37 100.0 32 CGATTTTATT ..................................... ACCCAACCTAAGCAATTATCTCTGTTTTAGCC 998101 37 100.0 40 TGTTTTAGCC ..................................... AAGGGTGAGCAGTTATGCGATCGCTCAAGGGTACAAAAAT 998178 37 100.0 39 GTACAAAAAT ..................................... CGAACCCAAAAACACGACGCAAGGCAGGCCAGACCCCAG 998254 37 100.0 33 CAGACCCCAG ..................................... AAGCGATCGCCTGAGTGCGATCGCTCTAAATTA 998324 37 100.0 35 CTCTAAATTA ..................................... TAGCCCATAAAACGGGCATATTGAGCAATTTTATT 998396 37 100.0 34 CAATTTTATT ..................................... GGAGTGTCAAAGTTGTGTAAAAGTTCAAGCTCTC 998467 37 100.0 34 TCAAGCTCTC ..................................... GTGAGGGAATTATTGGTAATGACAATGATTTTTT 998538 37 100.0 36 ATGATTTTTT ..................................... TAGGGATTAGCTAGGGGTGACAACCATAGAAGTGAT 998611 37 100.0 40 TAGAAGTGAT ..................................... TGAAACCCCCGATGGGGTTGGTACTGCTGGAGGGAAAAGT 998688 37 100.0 35 AGGGAAAAGT ..................................... AAAATCGGAACTGTCAGAAATTGTAATAGATTCTA 998760 37 100.0 39 ATAGATTCTA ..................................... AATACTAATAATATTATTAAGACTAGAAAAAATATTGCT 998836 37 100.0 35 AAATATTGCT ..................................... TTGGGGTTTTTCCCTGTCAACGGTTGAAAAATTTC 998908 37 100.0 34 GAAAAATTTC ..................................... GTGTAATTCTCACGGGGTTAACAAAGGTACTAAA 998979 37 100.0 37 AGGTACTAAA ..................................... GTTATCTTTTGCGGTCAAATTGTTAGCTAAAAATCTT 999053 37 100.0 37 TAAAAATCTT ..................................... TTTACTGATGCAATAGGGCGATCGCTACCCACACCTA 999127 37 100.0 36 CCCACACCTA ..................................... GATCATCATCCTAATCAGATCATGGCTAAATCCCGT 999200 37 100.0 41 TAAATCCCGT ..................................... CTGAAACACCTTCTGGCTATACTTTCACACTACCCATACAA 999278 37 100.0 ACCCATACAA ..................................... CGCGATCGCC ========== ====== ====== ====== ========== ===================================== 33 37 35 GTTTCAATCCCTAATAGGGATTAAGTGAAATTGCAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.30,-7.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [63.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [233,253] Score: 0/0.18 # # Final direction: R [0.27,4.5 Confidence: HIGH] >NC_019689 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1226682 37 100.0 36 ATGGTTAAAG ..................................... TCTTCCTGCGAATCCTCCTATGATATTAAAAGATTT 1226755 37 100.0 39 TAAAAGATTT ..................................... GACCTGCCAAGTGTTTCCAAGTATTTTTCTTCGCTCTGT 1226831 37 100.0 34 TTCGCTCTGT ..................................... AGGGGATTGATGAGGTACTGAGTAAGCTTAAGGA 1226902 37 100.0 35 AGCTTAAGGA ..................................... ATCATGATTCCGTAGGGTATGTTTGCTTAGTTTTC 1226974 37 100.0 35 CTTAGTTTTC ..................................... TCGCAGCCGTGGATTAAATCGGGAGATGTCCATAA 1227046 37 100.0 40 ATGTCCATAA ..................................... TCGGGTGGGCCAAAGAATATTCGAGAATGGAGGCCTGCTT 1227123 37 100.0 40 AGGCCTGCTT ..................................... GGGCGATTCCTGCGAGTCCTTTTGCTTCTTGGGCTTCTCG 1227200 37 100.0 31 GGGCTTCTCG ..................................... CCAGGCTTGTTTGTCGTTGTACAAGTCAGGT 1227268 37 100.0 40 CAAGTCAGGT ..................................... ATGAAGAAATGAAACGCCTGATCAGGCAAATCGACCAAAC 1227345 37 100.0 33 TCGACCAAAC ..................................... GTACAAACGTTCGTCCGCAACGGGTTACACCTT 1227415 37 100.0 33 GTTACACCTT ..................................... CTTTGATGAAAGCTATTCTAGTGAAACTGGAAT 1227485 37 100.0 35 AAACTGGAAT ..................................... TTTTTTCGGGAAGATTTACTACGAAAATCTTCCCG 1227557 37 97.3 34 AATCTTCCCG ....................................C CAAATCGGCTATTTGACGCTCTGATTTTTTGTCC 1227628 37 100.0 35 TTTTTTGTCC ..................................... TGATCTAACTAGTGCTAGAGGTGCATTGAGAACGG 1227700 37 100.0 35 TTGAGAACGG ..................................... TCCCACATCCGCCTCAAGAAGGAGGTGATCGGTGA 1227772 37 100.0 33 TGATCGGTGA ..................................... ATTGGAGTCGCCGATCGTTACTTTGTTTTTTTC 1227842 37 100.0 39 TGTTTTTTTC ..................................... TTAGGAAATATCTAAAAAAATGTCCCTCGAACGCATCCT 1227918 37 100.0 39 AACGCATCCT ..................................... TTAGGAAATATCTAAAAAAATGTCCCTCGAACGCATCCT 1227994 37 100.0 34 AACGCATCCT ..................................... CTTACCAAGCTTTTGGCTATACGGGGGTTTGGGA 1228065 37 100.0 35 GGGTTTGGGA ..................................... TTATAGGTTTTATTTTTATTAAAATTCTTCCTTAA 1228137 37 100.0 33 TCTTCCTTAA ..................................... CGAGACGAAAATATTCCTGTCAAAAATCAAGCC 1228207 37 100.0 37 AAATCAAGCC ..................................... TCTTACACGGTAGCGTCCAACCAAGCGCGGCTTATCC 1228281 37 100.0 35 CGGCTTATCC ..................................... GGTAGGAAGATTTTCGTAGAAATCTTTCTAGCCGA 1228353 37 100.0 33 TTCTAGCCGA ..................................... CGGGAGAGTTACTGGAATGGAAAAAAGCGCAGT 1228423 37 100.0 33 AAAGCGCAGT ..................................... GCGAAAGCCTCTCCCAATCGGCATCCTGTCAGA 1228493 37 100.0 36 TCCTGTCAGA ..................................... CTAGAAGCAAACGGGATGCCTTGGACTATAAAATTT 1228566 37 100.0 36 TATAAAATTT ..................................... CTAGAAGCAAACGGGATGCCTTGGACTATAAAATTT 1228639 37 100.0 34 TATAAAATTT ..................................... TTGGCAGGAATCAATGTTCCCACCAGCCAAAAGG 1228710 37 100.0 37 AGCCAAAAGG ..................................... TCAACAGCTCGACGAACAGAAAAAAGAATTTGAGCGA 1228784 37 100.0 33 ATTTGAGCGA ..................................... CGGGAAGGATGCTGAAGTGGATGAAGAAACAAG 1228854 37 100.0 37 AAGAAACAAG ..................................... TTTTGGAATCCAATGCGGAGGATATTATGGAAATCTG 1228928 37 100.0 37 TGGAAATCTG ..................................... ATAATGGGTGAGGCTCGTTCATGTAGAAGGGCACGAA 1229002 37 100.0 35 AGGGCACGAA ..................................... AATTCTTTTTCGACATTTCCCTTGTTTAAAAAATA 1229074 37 100.0 35 TTAAAAAATA ..................................... TCTATTAGCTTAAGGTGGGTATACGAGCAATTCTC 1229146 37 100.0 35 AGCAATTCTC ..................................... TACATTAGTACTATCCGAGCGCACGTAACTATTAA 1229218 37 97.3 32 TAACTATTAA ....................................G ATAAATGGTTAGCCCGGCGATACTCGTACCCA 1229287 37 100.0 36 CTCGTACCCA ..................................... GAATCGCTAGTTACGCTTGCTCCAACGTTAATGTCA 1229360 37 100.0 34 GTTAATGTCA ..................................... TGCTGAAGTTCCCAAATGGCTGCTCGATATTGAA 1229431 37 100.0 34 CGATATTGAA ..................................... CCGTAATTAGGATGGGGAGGCGAGGGGTTTGCTT 1229502 37 100.0 35 GGGTTTGCTT ..................................... TTGAAAAATCATTTCAATTTCCTCAAAAATTAATA 1229574 37 100.0 42 AAAATTAATA ..................................... TTGGTTCCCCTTCCCCGGTTGTTGGTTAAAAGCTTTTATCCT 1229653 37 100.0 CTTTTATCCT ..................................... ACCGATGTCC ========== ====== ====== ====== ========== ===================================== 42 37 35 GTTTCAATCCCTAATAGGGATTAAGAATGTTTGGAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.30,-7.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [42,282] Score: 0.18/0.18 # # Final direction: R [0.27,4.68 Confidence: HIGH] >NC_019689 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2419748 36 100.0 35 NNNNNNNNNN .................................... TCAAGGGCACGACCGGCGAGGCGCGGCTAGGCAAC 2419819 36 100.0 35 NNNNNNNNNN .................................... GCCGGCCAGGGCCTCGGCCACGGTGCGCGCGGCCT 2419890 36 100.0 38 NNNNNNNNNN .................................... AAAACCCAGTTTTTGCGAGTTAACGGCTTGTAAAAAAG 2419964 36 100.0 34 NNNNNNNNNN .................................... TAGGTCTGAGGCCTTGCGACAAGCACAATTAAAA 2420034 36 100.0 43 NNNNNNNNNN .................................... TTGGTAAAAGGATTGACCGTTCCTGTGTTCACAAAGGTTGCAG 2420113 36 100.0 38 NNNNNNNNNN .................................... CCTGAAAAAATAGGCGGATTTGTAGATACGCTTATTCC 2420187 36 100.0 41 NNNNNNNNNN .................................... AACATCCGCCGTCGGAGTTTACCTGCCCGTGCACCGAAGCC 2420264 36 100.0 38 NNNNNNNNNN .................................... ATAAACCCAGTTGAGATTGGCCGCCATGCGCACCTCGC 2420338 36 100.0 33 NNNNNNNNNN .................................... GGTCGTCCTGCCAGTCTCCCGCCACCAGCGGCG 2420407 36 100.0 37 NNNNNNNNNN .................................... CGGGCTTTGCCTGGAGCGCCCGGCGCAACACGGTGGT 2420480 36 100.0 37 NNNNNNNNNN .................................... GTCAGGTCCACGACCCGAACCCCTCGCCTGTGCGTCA 2420553 36 100.0 37 NNNNNNNNNN .................................... GACTGTTTGAGTATCAATGAGGACATTTTAAAACAAG 2420626 36 100.0 35 NNNNNNNNNN .................................... ACAAAATCACCAGCGAGCTGGAAACCCGCAATGCA 2420697 36 100.0 42 NNNNNNNNNN .................................... GTCGAGTATTACGACGCGCTGGCCGCCAGCTTCCTCGGCGAA 2420775 36 100.0 36 NNNNNNNNNN .................................... TATCTTTTTTGGATTGTAAATCTATATCAAGATTAA 2420847 36 100.0 38 NNNNNNNNNN .................................... TTCCTCATCGGATTCCCCACGCACGTCTACTGTTTCAA 2420921 36 100.0 44 NNNNNNNNNN .................................... ATCTCTGGTTACCGGCAAGCGCTTGTTTATGCGGCAGTTGGCAA 2421001 36 100.0 44 NNNNNNNNNN .................................... GGCTTACTTCAAGAAAGAGAACTCGGACCTCAGGCCACTTCAGA 2421081 36 100.0 42 NNNNNNNNNN .................................... CAAAAAGGTTTGGCAGAACCTAAGTCAAGAACATCAGAATGC 2421159 36 100.0 36 NNNNNNNNNN .................................... CGATAGAAGCGAGTTTCAGCCGAGGAACGCCGGGTG 2421231 36 100.0 42 NNNNNNNNNN .................................... AGCCGACCACTATAACGCGATGGTCATGTTCGTCAAACTACG 2421309 36 100.0 35 NNNNNNNNNN .................................... GCCCGTGTAGAGCGAGGCTGCGTCGGTCTGCTCTT 2421380 36 100.0 44 NNNNNNNNNN .................................... TTAGTGTAATAGCGCTCGATTTTAGTGATTGGCTTTTCAATTAT 2421460 36 100.0 37 NNNNNNNNNN .................................... CACAATTCCAAAACATCAAAGCTAAGATAGAGACCGA 2421533 36 100.0 43 NNNNNNNNNN .................................... CACTTTCACCATCGAATCCGGTGACACCCACCAGGGTTCCACC 2421612 36 100.0 41 NNNNNNNNNN .................................... GACAACCCCCATATCTTCAAACTCGGACGGTTCAAAGTCCG 2421689 36 100.0 38 NNNNNNNNNN .................................... TCAGCTCTCATAGCAGTGCTAAGCCCTTTAACTGCTTC 2421763 36 100.0 42 NNNNNNNNNN .................................... ATCTCCGATGCTACAAAAATTGCCAATCGTGCCGAAAGCAAA 2421841 36 100.0 38 NNNNNNNNNN .................................... TTTCATCGCCCATGAAAACCACTATCGACTGGATGCGC 2421915 36 100.0 39 NNNNNNNNNN .................................... ATCGGTTTCCCCATTTCCAGCGTCAACAGTTGACCAAAG 2421990 36 100.0 45 NNNNNNNNNN .................................... TCACCAATGCGGTCGGCATGGCACTCGCTGAAAAGCTACTCGCCG 2422071 36 100.0 37 NNNNNNNNNN .................................... GTCGCGGGGCTTGCCGTCGCGATATTTCCAACTTGGC 2422144 36 100.0 47 NNNNNNNNNN .................................... TCGCGAAGGTGAACGGCGCGCGCGGCGACGCGGCGGGGCTCGCCCGG 2422227 36 100.0 35 NNNNNNNNNN .................................... AGTATCCGGCTCACGCAACGAGAGCGCTCTTCATG 2422298 36 100.0 39 NNNNNNNNNN .................................... CTATTTACTTACTTATATAAGTAAGTAATTAATTTATAT 2422373 36 100.0 54 NNNNNNNNNN .................................... TTGATCGTCTTTATAGGCTGAATTGTTTTGCTCAGGCGTGTGTCCCAGCGATTG 2422463 36 100.0 39 NNNNNNNNNN .................................... TGGGCGCGCAATGCCTCTGTATTGCAAAAGTTGCCTTAG 2422538 36 100.0 37 NNNNNNNNNN .................................... CACAAGTTGGCCGAGTCGCAGAAAAAATCGGCGCGGA 2422611 36 100.0 37 NNNNNNNNNN .................................... GATGGGCAACTGGGTCTTCGGGTGTGACATCTGCCAG 2422684 36 100.0 36 NNNNNNNNNN .................................... ACTCCAATGTGGTTTTTACCTCTTGTTCCACACTGG 2422756 36 100.0 38 NNNNNNNNNN .................................... CTGAGTTGCATGCAGAGCCATAAGGGCATCGAGCTGAG 2422830 36 100.0 47 NNNNNNNNNN .................................... ACCTGGTATCTTCGCAACCCTACTCGACACACCGTAGTTCTTTGTAA 2422913 36 100.0 39 NNNNNNNNNN .................................... TTGGATAAAAATATTCGTTACCTTTTGCAGCTCCGCCAA 2422988 36 100.0 36 NNNNNNNNNN .................................... TAAACCACGTAAAATTATTTCCACCCAAGACAATTG 2423060 36 100.0 42 NNNNNNNNNN .................................... GTGGTAGCTCTAACATTACATGGATAATGGTTTGTATCCGCG 2423138 36 100.0 38 NNNNNNNNNN .................................... ACCTTCGGGTCAGGTGGGCTGGTTGAGCTTCTTAAGCC 2423212 36 100.0 35 NNNNNNNNNN .................................... AACCGAAGCCAGCTCTTGAGGTTCCATGCCAACAA 2423283 36 100.0 35 NNNNNNNNNN .................................... AACCGAAGCCAGCTCTTGAGGTTCCATGCCAACAA 2423354 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 49 36 39 CTCTCTATTTATTAGAGAAATTAGTTGAATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.22%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [50.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [197,58] Score: 0.18/0.18 # # Final direction: R [0.18,0.27 Confidence: LOW] >NC_019689 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3805636 37 100.0 34 AAGAGCTGAT ..................................... AACTTGCTTCGTTTCTGCTAGGGCTTGTGCCTTG 3805707 37 100.0 34 TTGTGCCTTG ..................................... CACCTTCAAATACTGGGAATGGCAAGGGATACGC 3805778 37 100.0 37 AGGGATACGC ..................................... GCCGCCACTATCTTCAGCCATCACTTGCAGGTAATCT 3805852 37 100.0 36 CAGGTAATCT ..................................... ATTTGTGTTTAAAAATTTATTGCATCCATCACCGCT 3805925 37 100.0 CATCACCGCT ..................................... ATTGCAAGTACTTTTGCACGAGGAAATGCGGGA ========== ====== ====== ====== ========== ===================================== 5 37 35 TTTGAAAATCAACTAAATCCCTATCAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.50,-7.40] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [53.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [338,619] Score: 0/0.18 # # Final direction: F [4.5,0.27 Confidence: HIGH] >NC_019693 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================================= ====== 3497270 39 94.9 32 GCGATCGCCT -.....................................A TGATTCAGAACGATATTATATTGATTTTGCTG 3497341 39 100.0 32 GATTTTGCTG ....................................... GTACACCTATCGCCCCAGGGGAGACCTCCTCA 3497412 39 100.0 GACCTCCTCA ....................................... ACTGGTATTTG ========== ====== ====== ====== ========== ======================================= 3 39 32 AGTTTCAATCCCTGATAGGGATTAGAGGTTATTGAGACC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.97%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.30,-8.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [108,56] Score: 0/0.18 # # Final direction: R [0,5.55 Confidence: HIGH] >NC_019693 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 4394995 37 100.0 36 ACCACGCCCA ..................................... ATGTCGCAAACGGAGCAGATGGCGCAGGACCTCTTC 4395068 37 100.0 35 GGACCTCTTC ..................................... CGCCTGGGGGTTTAATCATTGGTGCACAGATTAGG 4395140 37 100.0 33 ACAGATTAGG ..................................... GGTTGCCGGGTTAATCACTAAAATCGAGGTTGA 4395210 37 100.0 34 TCGAGGTTGA ..................................... CAGCGTGATCTTGATTTAGTGATGCAGCAACTCA 4395281 37 100.0 35 CAGCAACTCA ..................................... CAGCGTGATCTTGATTTAGTGATGCAGCAACTCAA 4395353 37 100.0 34 AGCAACTCAA ..................................... TCAGCCATTTCTATCCTCGGGGTGTGTCATTTGA 4395424 37 100.0 44 TGTCATTTGA ..................................... AAGTAGAGTATCCCTTTATCCCGGCTGCTTTACAGGCAGCCCTA 4395505 37 100.0 34 GGCAGCCCTA ..................................... GTAGTAAACGGGGATAACTCGGAAGGTTTTCATG 4395576 37 100.0 34 GGTTTTCATG ..................................... GACACCCTGATTAAACCGACCGGACTGATTTCCT 4395647 37 100.0 31 CTGATTTCCT ..................................... GAATAAGATCGGCAATCTCGTTTGTACCCAT 4395715 37 100.0 35 TTGTACCCAT ..................................... TCTAACCATCGATCATGCCACTGAGCGCCAAAGCG 4395787 37 100.0 34 CGCCAAAGCG ..................................... TGGGTTTGTCGTACCGGAACACCTGCGAGAACAA 4395858 37 100.0 41 GCGAGAACAA ..................................... CTCATCCTTTTTGGCTTGGATCGCCATTAGGACAACACTAA 4395936 37 100.0 35 ACAACACTAA ..................................... TGGTTACTCACTTGAACTCCTTAACAAACTTGGTT 4396008 37 100.0 33 AAACTTGGTT ..................................... AGAAGCCATCTCCCATGCGCCATTTCCGAGAAT 4396078 37 100.0 36 TTCCGAGAAT ..................................... ATAATCTTAAAAAGAATATATATAGACAAAAAAATG 4396151 37 100.0 35 CAAAAAAATG ..................................... TTTCTCTTTAACAAAATGAACCCAGAAGTTTCCAT 4396223 37 100.0 34 AAGTTTCCAT ..................................... AGTGAACAGCCTGTGGTCGTTGAGCGTAACGTTC 4396294 37 100.0 35 CGTAACGTTC ..................................... CTATATTAAAGGATTTAGTGTTATTGGCTTATGTA 4396366 37 100.0 35 GGCTTATGTA ..................................... TTAAGCTGTGCGGTCCAGAGCTCCGGATAGCTCTT 4396438 37 100.0 41 GATAGCTCTT ..................................... AATAGTTGGGGTGGTGAAGCTAATTTTGGCAAAGCCTTGTG 4396516 37 100.0 34 AAGCCTTGTG ..................................... CTCGTTCGGCATCTGTAGGAGTTGCGGGTGCTGC 4396587 37 100.0 36 CGGGTGCTGC ..................................... CTCTCTTTCTAATTCTCCAATGTAATTCAAAGCAGT 4396660 37 100.0 36 TCAAAGCAGT ..................................... TTTGCCCTGGTGATTGCCTTGGCTAAATCAAACGAC 4396733 37 100.0 34 ATCAAACGAC ..................................... GGAAATCTTTGCTGAAAGCCGTGAGGTAAGACCG 4396804 37 100.0 34 GGTAAGACCG ..................................... AAGTCAATCATCATCGTCCCCATTTAGTCTCTTC 4396875 37 100.0 39 TAGTCTCTTC ..................................... GATTAGCTTATTTGCGGAAGGCTAGAATAGTCCGTGCTT 4396951 37 100.0 GTCCGTGCTT ..................................... TGTAGCCATC ========== ====== ====== ====== ========== ===================================== 28 37 35 GTCTCAATAACCCCTAATCCCTTTCAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.30,-9.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [570,2016] Score: 0.18/0.18 # # Final direction: F [4.5,0.55 Confidence: HIGH] >NC_019693 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 4397124 37 100.0 34 AAGAGGGGCT ..................................... ATAGGGCTTTCGATCGGTGGCGCGACCCTACCAG 4397195 37 100.0 36 ACCCTACCAG ..................................... CGTGATGATTCGGGTAGGTTGATTAGTGCAGAAAGC 4397268 37 100.0 33 TGCAGAAAGC ..................................... ACGGAATCCGGAGTGGTTTATGTTGTCAGTCCC 4397338 37 100.0 35 TGTCAGTCCC ..................................... CCTCTGCTAAACGTGATAATGATAATCGCCGTTAT 4397410 37 100.0 35 TCGCCGTTAT ..................................... TCAACGCTGCAACGACTGGCGTCTCACCAGTATCC 4397482 37 100.0 35 ACCAGTATCC ..................................... ACCGACTGGAACCTCCACCTTTAACCGAATCAGTG 4397554 37 100.0 34 CGAATCAGTG ..................................... GGGGACTAGGGTTGAGTTGCGTTACGACGGGTTG 4397625 37 100.0 34 CGACGGGTTG ..................................... CGCCGCTAGGTTCGCTTGACTTGACGGTATAACC 4397696 37 100.0 35 CGGTATAACC ..................................... CTAGGGGTGAAGGGTCAGCATTCTGGCAAGGGCGG 4397768 37 100.0 34 GCAAGGGCGG ..................................... TTAGGAGTCAGGTTCACAATGAACAGCTTAACAG 4397839 37 100.0 33 AGCTTAACAG ..................................... GGAGGATCTCAGGGTTCTCAAACCTGGGGTCAC 4397909 37 100.0 41 CTGGGGTCAC ..................................... ATTGAATTACGAAGCAATGCAAGATTTTAAAAGATTGCTTG 4397987 37 100.0 40 AGATTGCTTG ..................................... GATATCCCCCTCGTTGTCAATGGCAATCTGGAGGATTTGG 4398064 37 100.0 36 GAGGATTTGG ..................................... GCCGCTCCGGTCCAGCTTTCCTTCTTCTAGTTTTTC 4398137 37 100.0 36 CTAGTTTTTC ..................................... AAAAACTTTGCCGACTTTAAAGTAGTCCAACATCTG 4398210 37 100.0 34 CCAACATCTG ..................................... TGGAGCGAACCGGGGGATTTCCCCGAACAATTAC 4398281 37 100.0 36 GAACAATTAC ..................................... TGGAAAGCGTCGCTCTCCCACGATAGGAAATAACGA 4398354 37 100.0 33 GAAATAACGA ..................................... AAATATCACTGTACGGTTCTTGCGTACCTCTTG 4398424 37 100.0 36 GTACCTCTTG ..................................... AGTTAAGACAAACAACACCGTTAGAAACATCATCAA 4398497 37 100.0 36 ACATCATCAA ..................................... ACCATAAAAGACTCAACAGGTGTGGCGATCGCAATG 4398570 37 100.0 34 GATCGCAATG ..................................... TGTTAGATGCTGCGATAGCTGACGCTTCAAGTGC 4398641 37 100.0 37 CTTCAAGTGC ..................................... GCTACTCCGGTTTGAGTGACCACTAAAGCACCACTAG 4398715 37 100.0 36 GCACCACTAG ..................................... ATCCGGTGAGCCTCATCTAACACAACAACCTTATAG 4398788 37 100.0 41 AACCTTATAG ..................................... TTAACAGGTTTCCGCAGGGGGAAGATTAGTAGTAAATTTAT 4398866 37 100.0 34 GTAAATTTAT ..................................... AACGCAGCGGGCGAAAACATCATGAATCATGAAC 4398937 37 100.0 AATCATGAAC ..................................... AACAAAATTT ========== ====== ====== ====== ========== ===================================== 26 37 35 GTCTCAATAACCCCTAATCCCTTTCAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.30,-9.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [33.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2699,30] Score: 0.18/0.18 # # Final direction: F [4.68,0.64 Confidence: HIGH] >NC_019693 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================== ====== 5789187 34 100.0 41 TGTAGACAAG .................................. CGGAATACGGGTACTTTGGCTATCAGCTCAAGGATATGGCG 5789262 34 100.0 46 GGATATGGCG .................................. AACAGGGAAAGATGTTCCCACCTGGCTGATCATCATGGCTAAGTTG 5789342 34 100.0 39 GGCTAAGTTG .................................. ACTACGCAACCCGCGAAGTGGTCTACAACACAAAAATGC 5789415 34 85.3 48 ACAAAAATGC ......C.......................---- GAAATTGCCGCTATTGCCAAAGCGAACGGGATGGAGAAAACTGGACGG 5789497 34 100.0 50 AACTGGACGG .................................. TATCTGATAGTCGCATCGTTACGCCTAACAAACCTTTGCTGACTATCCTG 5789581 34 91.2 39 GACTATCCTG ........A..................GA..... CATTCCGTTCGACGGATTTATCCCTCCAGGTTCCCCACG 5789654 34 94.1 38 GTTCCCCACG ..G..........................T.... AAGCTGAACAAATTGCCAAAGTCTCAATTGATGCAATG 5789726 34 97.1 42 TGATGCAATG ........A......................... CTCTCGGGAATTGATATCGACCGTGCAGCATACCAAGAGATG 5789802 34 94.1 42 CCAAGAGATG .C.........................G...... GGGCAAGGGTATGATGTTCTCTTGGACTTCAACCCCGCTACG 5789878 34 97.1 46 CCCCGCTACG ........A......................... GGTTTCGTACACTGCGTATGTGAACTATGCTCCCGTGGTAAATAGG 5789958 34 100.0 43 GGTAAATAGG .................................. GTTTCAAGGAATCGATAACTCAATCGCAACCGTGGTGTTGCAG 5790035 34 100.0 46 GGTGTTGCAG .................................. TTTCTTTAACCTCGATAGTCAATCCCATTCCTCAGCGTTTTCCGTG 5790115 34 97.1 43 GTTTTCCGTG ........A......................... AGTCACAAACCAGCTAATCATTAACGAAACTTTCTTCGGGGAG 5790192 34 94.1 41 CTTCGGGGAG .....CC........................... TCAAAGACTACATCGCCGCCCTTGAAACCGCTGAAATCGTG 5790267 34 94.1 47 TGAAATCGTG ...T....A......................... ACGCCCCCGTTGTGGATATAACCACTACAGGTACGAACGACAAAGCC 5790348 34 97.1 45 CGACAAAGCC ..............T................... GGAGAAGCAGTTGTAGGTCTCGGAGTGTCAACCGGCACCCGAGGG 5790427 34 100.0 40 CACCCGAGGG .................................. TTTTCCGTGTAAATAGTGGAACATCCTGGACGGTAATCAG 5790501 34 82.4 40 CGGTAATCAG .......T....T.AC.....GT........... GTCAATTTTTACAAGACGCTACAGAAGCCATCTACACCGT 5790575 34 35.3 42 TCTACACCGT G..T.C.ACGAGT.CGA...T.ACT.ATC.GT.A AATGCTTCCGTAGTTTTCGACTAAGCTACCCTATGCTAATTT 5790651 34 35.3 38 ATGCTAATTT G..T.C.ACGAGT.CGA...T.ACT.ATC.GT.A GCCGAAGAATCCCGTTCCGAGGTGTATTACCGAGGATA 5790723 34 35.3 44 ACCGAGGATA G..T.C.ACGAGT.CGA...T.ACT.ATC.GT.A GGGGAAGGTAACTCCTTCACACGAGCCGATGCAGGAGCGATGTT 5790801 34 35.3 42 GAGCGATGTT G..T.C.ACGAGT.CGA...T.ACT.ATC.GT.A GTTCAATGCTAATGCTGAAATCACTTCCAATTTCTCTGCGAA 5790877 34 32.4 44 TCTCTGCGAA G..TTC.ACGAGT.CTA...T.ACT.ATC.GT.A TGGAAACCAACGATTGACACGACTATCGAATGGTTTAATAATAA 5790955 34 35.3 TTAATAATAA G..T.C.ACGAGT.CGA...T.ACT.ATC.GT.A TTCCTCTGCC ========== ====== ====== ====== ========== ================================== 24 34 42 TTTCCAACGAGTCCGATTTTAACTAATCGGTAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-3.10,-2.90] Score: 0/0.37 # Array degeneracy analysis suggestion: F [8-52] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [153,230] Score: 0/0.18 # # Final direction: F [0.68,0 Confidence: HIGH] >NC_019693 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 6251489 37 100.0 35 GGCGATCGGT ..................................... ATCGTTGAGGTGAAGGGCTACATAAAGGAGTAACT 6251561 37 100.0 35 AGGAGTAACT ..................................... TATTGAGGGCGGTGTTTATGCACTCAGGGAAAGGA 6251633 37 100.0 38 AGGGAAAGGA ..................................... AACAGCATCAGGAATTTATGTTCACGTTGCGAACCAGG 6251708 37 100.0 36 GCGAACCAGG ..................................... CTGTTCATGGGATAACCTAATCAAGAGAGCATAGAC 6251781 37 100.0 38 GAGCATAGAC ..................................... TCTGCGGGCTGATTTCACCCCAATCCAAACTGAGGAAG 6251856 37 100.0 35 ACTGAGGAAG ..................................... TCATCCTCGACAACGAAGAATAAAATCATTATCGA 6251928 37 100.0 35 TCATTATCGA ..................................... CAACCTCCATCGCTATCTGGCGGGCAATCCGCAGG 6252000 37 100.0 35 AATCCGCAGG ..................................... AAGTTCGTTTCTTCTCTTTTGAAGTAACAATAGGC 6252072 37 100.0 38 AACAATAGGC ..................................... CGTGCGGGCTTCCTTCTTCCCTGGGTTTCTTCGGTTGC 6252147 37 100.0 37 CTTCGGTTGC ..................................... TGACCGCACGATCGCACTCTGCGATCGCCACGCACAA 6252221 37 100.0 32 CCACGCACAA ..................................... CTCGACTGGGCCGCGCAGCTTTATGGGTTCAC 6252290 37 100.0 36 ATGGGTTCAC ..................................... ATGGGAGGCTACATCAGAAGCGAGAATTGGTTTAAG 6252363 37 100.0 39 TTGGTTTAAG ..................................... ATTCAAAACAAGCGTGGTGCTGCTCAAATGTGGGCGCAT 6252439 37 100.0 36 GTGGGCGCAT ..................................... TTTGCCTCCGTTAGGGCGATCGCCCCCATAATCATT 6252512 37 100.0 37 CATAATCATT ..................................... ATTTCGTTTTGGAGTTTGGCTGAGAGCATGGACAGGG 6252586 37 100.0 36 ATGGACAGGG ..................................... CCGAGGCAGTTTCGGATAGTGACCGTGAGGCGATCG 6252659 37 100.0 38 GAGGCGATCG ..................................... AATAGTATTGTGCCAATAATGGCAACAATTTCAACCGA 6252734 37 100.0 37 TTTCAACCGA ..................................... AAAATAGAAAAATAACGAAAAGCCCAATTTTCAATAT 6252808 37 100.0 35 TTTTCAATAT ..................................... AAACTAGATTTCCGTTTTGACATGGCGGAGTGCGG 6252880 37 100.0 36 CGGAGTGCGG ..................................... GGACAGAAACTCAGTCGGACGATTGCGGACTTACGA 6252953 37 100.0 GGACTTACGA ..................................... AGGATAGGCG ========== ====== ====== ====== ========== ===================================== 21 37 36 CTTTCATTACAATGAATCCCGGCAACGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-10.60,-9.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [38.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [270,583] Score: 0.18/0.18 # # Final direction: F [4.87,0.45 Confidence: HIGH] >NC_019693 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 6235040 37 97.3 35 GGAAGACTAG ..............................A...... TCATACAAAGCATCACTTATGTATTGTTCTGAAAA 6235112 37 94.6 37 GTTCTGAAAA ...........................C..A...... GAGGGCTTTTCAGGCTCCGTTTTGTGCGTGGCGATCG 6235186 37 97.3 36 GTGGCGATCG ....T................................ CAGCCCATTCTTTGGCTGTAAAGGGTATTTGGAGAA 6235259 37 100.0 36 ATTTGGAGAA ..................................... CTAAATAAACCAATCAGAGGGTTAATCATGACTTAT 6235332 37 97.3 39 CATGACTTAT ................T.................... CGCTTGTTGCGTGGCGATCGCACCGTGCGATCGTTTGGT 6235408 37 100.0 36 ATCGTTTGGT ..................................... GAGCAATAAAAAGGAAGGGTGGTTAGTTCGTATTAA 6235481 37 100.0 25 TTCGTATTAA ..................................... CGATCGCTCCGTCGAATCTTTATCT 6235543 37 70.3 36 ATCTTTATCT -----------.......................... CTCAACCGGCCAAATCCTCACCGACTCGATTCAGTT 6235616 37 100.0 38 CGATTCAGTT ..................................... TCTATGCGGGGGAAATCTGGGAGGTGCTGAAACAGTGG 6235691 37 100.0 37 GAAACAGTGG ..................................... CTGGGCGACAATCAGCCGGATTATGGTTTAAGTGGCT 6235765 37 97.3 34 TTAAGTGGCT .....C............................... TTCACTTGTTCAACGTCAACGACTCACCCCGACT 6235836 37 100.0 CACCCCGACT ..................................... ACCGATCGCC ========== ====== ====== ====== ========== ===================================== 12 37 35 GTTTCAATCCCGTTGCCGGGATTCATTGTACTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.05%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-9.00,-10.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [50.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [352,264] Score: 0/0.18 # # Final direction: R [0.27,5.28 Confidence: HIGH] >NC_019693 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 7038938 37 100.0 35 CCACCGGGGG ..................................... TACAATCAAACACCCCTACATCGCGCCCTTCCCCG 7039010 37 100.0 34 CCCTTCCCCG ..................................... GAATGAAGCCTGCACCGGCGCGGATTCCATTCAA 7039081 37 100.0 41 TTCCATTCAA ..................................... CCGCTTCGGCTTCACGCTGTCCGGGTCATCTGGATTATAAA 7039159 37 100.0 35 GGATTATAAA ..................................... GAGCATATTCTGCCCCAGCCGGAACCTTAATAAAT 7039231 37 100.0 34 CTTAATAAAT ..................................... GTGGAAGGGTTCCGCGAAAGTTCAACCAAAAATG 7039302 37 100.0 34 ACCAAAAATG ..................................... GACGTGGCAACTCCCCCGGCGCTACTACTCCCCC 7039373 37 100.0 35 CTACTCCCCC ..................................... GCTGCGAAACTTCTTCCCACATCTGAGGGTTGTTT 7039445 37 100.0 34 AGGGTTGTTT ..................................... CTTGCGTACACTTGCGCTGGAATCACTCCCTATG 7039516 37 100.0 34 ACTCCCTATG ..................................... AAGTTCATTATTGCAAACACATTCACTAGAGCCA 7039587 37 100.0 34 ACTAGAGCCA ..................................... TACTTATACGCAACGCATTGTATAGCAGCATAAC 7039658 37 100.0 38 GCAGCATAAC ..................................... AGCCTTAAACTGCGAGTTGACCGACCGGAAAAAATTGA 7039733 37 100.0 36 AAAAAATTGA ..................................... AAGCAAGAAAGGAATCAGGATCGGTGCGATCCTGGA 7039806 37 100.0 34 CGATCCTGGA ..................................... GGAGCAAGCTCAAGCAGACGCCAAGCTGAGAGAA 7039877 37 100.0 36 GCTGAGAGAA ..................................... AACGCATTCTTTCCCATTTAATCTCTCCTACTATGT 7039950 37 100.0 35 CCTACTATGT ..................................... GGCTAACCGTAAACGAAACACTGGAGGCGCTTAAT 7040022 37 100.0 33 GGCGCTTAAT ..................................... CCGGTAGCAAGATGGGGCTTGCTAGTGACCTCA 7040092 37 100.0 41 AGTGACCTCA ..................................... TTCGTAATATTCCGGTGGGTGCATCCCCTGGTAAGGGTACA 7040170 37 100.0 37 TAAGGGTACA ..................................... GTCCTCCCCCCGGCTCTTAGGGGGGCGGGCATTTTAA 7040244 37 100.0 37 GGCATTTTAA ..................................... AAGGGGGGGAGGATTGCCCTCTCTCAGGGCCTTGCAG 7040318 37 100.0 34 GGCCTTGCAG ..................................... CGAATACTCATCGTGCGACTGGAGTAGTGATGAG 7040389 37 100.0 35 TAGTGATGAG ..................................... CTATCGGACCAGAATCTGGATTTACCGGCTCAATC 7040461 37 100.0 34 CGGCTCAATC ..................................... CACCAGACGCACGGACCCATCGGCCCAGACATCG 7040532 37 100.0 38 CCAGACATCG ..................................... ATCCGAATGATCGGACCTTAAATAATTTCTGCCATTGG 7040607 37 100.0 34 CTGCCATTGG ..................................... GGACGCTTCTCCTTGAAGCCTTAAACGAAGTAAA 7040678 37 100.0 34 ACGAAGTAAA ..................................... AGTTGAGGAATTCTCGACTGAGGAGATTGAGGAG 7040749 37 100.0 36 GATTGAGGAG ..................................... ACAAAAATCGAGGAAAACAAACTTTTCAGCGAGTGG 7040822 37 100.0 34 CAGCGAGTGG ..................................... AAATATCAACTCAAAAACTTCTATCGCGACTATC 7040893 37 100.0 34 CGCGACTATC ..................................... GCAATCATCTGACTCGCCTTGTAGATAGGCTTTG 7040964 37 100.0 36 ATAGGCTTTG ..................................... GCTTATCAATCCGACGAATCCGGGGAGGGAATGCGG 7041037 37 100.0 34 GGGAATGCGG ..................................... TTGAGACAACACGAAGCTACCGGAGAATCCATCA 7041108 37 100.0 37 GAATCCATCA ..................................... AGAAAAAACCCTTTTCTGGAACTCTTATGCTGTCCCG 7041182 37 100.0 38 TGCTGTCCCG ..................................... GACTTTGCTTTGGTGAAATCGACTCACCAACAATCCGA 7041257 37 100.0 34 AACAATCCGA ..................................... CCGATCACCAGGGAACCATCCAAAAATAGGGAGG 7041328 37 100.0 36 AATAGGGAGG ..................................... TTTGTCTTACCCGACAGAGATGATTAATCGCCATGA 7041401 37 100.0 35 ATCGCCATGA ..................................... GCCGCTGCAAGTGGCTTCATTGCAAGCTCAATGAA 7041473 37 100.0 35 GCTCAATGAA ..................................... GTTCATGCGAGAAAAGTTGGGCGGTAAATAATAAG 7041545 37 100.0 36 AAATAATAAG ..................................... CAGTAATTTGTCTTACCCGACCGACTGCCCGACAAG 7041618 37 100.0 37 GCCCGACAAG ..................................... ATTACAGGGGGAGGAAGCGGGGATTTGCATATAACAG 7041692 37 100.0 40 CATATAACAG ..................................... AGGAATATCGTGGTGATAGTATCCGGGCCGGTAGGTCCCA 7041769 37 100.0 35 GTAGGTCCCA ..................................... ACCCAACGCAGGCTCAAAGCTGAGAGAGAAGCCAA 7041841 37 100.0 35 GAGAAGCCAA ..................................... CATACAGGGAGCATTTAAAATCAGCAAAATGATTT 7041913 37 100.0 37 AAAATGATTT ..................................... ACTACTCCATAAATATAAGGATTTGAATTAAATAAAG 7041987 37 100.0 37 TTAAATAAAG ..................................... TGGGGAATGAATAGAAAACAGATACTAAAGGAATAAA 7042061 37 100.0 41 AAGGAATAAA ..................................... GTTTCAGGGATTCAGTCAATTGGGGCCACTGCGGTTTCCTG 7042139 37 100.0 36 CGGTTTCCTG ..................................... TAGCGAGACAACGTTCAATTTTTGGGCATACCTTGC 7042212 37 100.0 38 CATACCTTGC ..................................... TCATTATTACAAACAGACAGATGGGGGATTTTCAAATG 7042287 37 100.0 34 TTTTCAAATG ..................................... AAATCAACTTGCGATGCTTGTTAAACTGCTTGCC 7042358 37 100.0 ACTGCTTGCC ..................................... TAATTGAATC ========== ====== ====== ====== ========== ===================================== 48 37 35 GTCCCAATGACCTCTAATCCCTTTCAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.05%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.30,-7.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [48.3-50.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [841,2481] Score: 0.18/0.18 # # Final direction: F [4.5,0.18 Confidence: HIGH] >NC_019693 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 7042430 37 100.0 45 ATTATCGGCC ..................................... TTGGAATATGCCCTCCTCTGGATCGGTAATAGTTGCGATAACCCG 7042512 37 100.0 35 CGATAACCCG ..................................... GCAAGCGCGGCAGGGGTTGATCCAGGGATTGTGCA 7042584 37 100.0 39 GGATTGTGCA ..................................... ATCGAAAAAACTGCATTCTTCCAGGGGCTTTCCACAAAT 7042660 37 100.0 34 TTCCACAAAT ..................................... GTAACTCAGCAGGGTCCAACTCTGGGAGGGGGAT 7042731 37 100.0 43 GGAGGGGGAT ..................................... ATCGATATTACTACCCCTGCTGCTGACTCAAATCCCGTCCCAA 7042811 37 100.0 40 CCCGTCCCAA ..................................... ACACGAACATAGTCAGGGCCAACAACAGCAGCTTTTACAA 7042888 37 100.0 GCTTTTACAA ..................................... TGGAATTTTT ========== ====== ====== ====== ========== ===================================== 7 37 39 GTCCCAATGACCTCTAATCCCTTTCAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.05%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.30,-7.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [4333,1951] Score: 0.18/0.18 # # Final direction: F [4.68,0 Confidence: HIGH] >NC_019693 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 7504261 37 100.0 38 CCACGGGCCG ..................................... AAAACTTCTTTTAGAGGCATTCTATTCCCCTCTTTTCG 7504336 37 100.0 37 CCTCTTTTCG ..................................... GAAGCCGCTTACGCTTTTATAGCTCAGTAATCCAAAG 7504410 37 100.0 34 TAATCCAAAG ..................................... TGATTGTCAAGACTCGGACTTTTTCCATATCCTC 7504481 37 100.0 37 CCATATCCTC ..................................... TTCAAACAGCAGACTTTCGGTTTCGCGACAGTGAGGA 7504555 37 100.0 34 ACAGTGAGGA ..................................... TTTCAAATCTGGGGTGTTTGTCAGCAAGAACTAC 7504626 37 100.0 37 CAAGAACTAC ..................................... CTAAAGGAACTACCGCCCAAACAACGGATCTTTCAAA 7504700 37 100.0 37 ATCTTTCAAA ..................................... TGAGCACCGTATCTGATCCAAATAAAAAAATCCCCGA 7504774 37 100.0 36 AAATCCCCGA ..................................... CGTTTTCCCCCCCAACCCCCAAAGGGGGGGCCGGAA 7504847 37 100.0 34 GGGGCCGGAA ..................................... AACAATCAACCCAACATCTCCTAGACTAGGAAAA 7504918 37 100.0 34 ACTAGGAAAA ..................................... TTTGGATCCAAGCCTTGCGGCATTGAAATTCAAC 7504989 37 100.0 37 GAAATTCAAC ..................................... CTGAAAGCTAAACTATCAGCACAAAACAAGCGATCGC 7505063 37 100.0 35 AAGCGATCGC ..................................... CGGTTTCGGTGTCTGGTGTTACCGGCAATTATGCG 7505135 37 100.0 35 CAATTATGCG ..................................... CTGATGGCTCTGAGGGCGCAAGTATTCCCTATGCT 7505207 37 100.0 36 TCCCTATGCT ..................................... CACTAATTGTATAATCTATACCATCTGGTCTTAGAC 7505280 37 100.0 40 GGTCTTAGAC ..................................... TTGCATTGGCGTACACCTTGCAATTATCTAATTTGAACCC 7505357 37 100.0 36 ATTTGAACCC ..................................... CGATACAATGATTGCGGATCAGTTACTCACCTGCGG 7505430 37 100.0 35 TCACCTGCGG ..................................... TAAGAAGGGTTACGCCCCTGGGTGGGCGTTTGTGA 7505502 37 100.0 35 GCGTTTGTGA ..................................... CTAATGCAGCGCCTCCTAAGGGCAGCTTATGGGGA 7505574 37 100.0 33 CTTATGGGGA ..................................... TAACTAACCCAGCCCATTTAGTGGATAGGTTAC 7505644 37 100.0 35 GATAGGTTAC ..................................... AAACACGCTGAGGCGATCGCTAAAGCGTTTAATGA 7505716 37 100.0 36 CGTTTAATGA ..................................... ACCCAATGGGAAAAACTTCCAGGTTTTGTAAAGCTC 7505789 37 100.0 33 TGTAAAGCTC ..................................... GAAACACACTTCAAGGTAACATCACAGCATAAG 7505859 37 100.0 33 ACAGCATAAG ..................................... ATAGTAACCCTTAAGAGGATGATTCCACCTTTG 7505929 37 100.0 36 TCCACCTTTG ..................................... TCCCTGGGCAAGTTTTAGCACCGGCAACTATTTGTC 7506002 37 100.0 37 ACTATTTGTC ..................................... ATCTGCGGCTAACGCGGGTATTTCCGCTTGCGCCAAA 7506076 37 100.0 33 TTGCGCCAAA ..................................... TTTCCAAATACTTGATTCTTGACTTAGCTATTT 7506146 37 100.0 35 TTAGCTATTT ..................................... GAGCGAGATTTTACCGCTTCCCTGGAGCGCCAAAA 7506218 37 100.0 41 AGCGCCAAAA ..................................... ATAAGTAAAACCACAAACATGAAGGTAAACATAGTCGGAGA 7506296 37 100.0 34 TAGTCGGAGA ..................................... TTTGACCAAAAATGCCAAGCCGAACAAATAGCAA 7506367 37 100.0 34 CAAATAGCAA ..................................... CCAGTTTTTTCTCTCCAGCTTCCCGCGCCTTATG 7506438 37 100.0 37 GCGCCTTATG ..................................... GCGGCTCCGGCTTCTTCCCCGGGTTTTCTCTCGGGGC 7506512 37 100.0 33 CTCTCGGGGC ..................................... AAAATCAAGGTTGCAAAGCCTTAACTTTAGAAT 7506582 37 100.0 41 ACTTTAGAAT ..................................... TCAGTATCAAGACCACTAGCAGTAGCCAGAAGCGCCAACTC 7506660 37 100.0 35 GCGCCAACTC ..................................... AATTCTTGGTCATCGCGAGAAATAGGAATTGAAAG 7506732 37 100.0 36 GAATTGAAAG ..................................... TTGTAAACATTTGTGACAATCCCTTGCTTTTACTTG 7506805 37 100.0 35 CTTTTACTTG ..................................... CCGCTCTGAGACTTGGAAGGAAAATTTAGGGAAAG 7506877 37 100.0 34 TTAGGGAAAG ..................................... CATCTCGTCCAGGGGACTGAACTGATCAAGCTGG 7506948 37 100.0 33 ATCAAGCTGG ..................................... ATGGGAAAGTGACGCTTTCCAAACCGGCTACGG 7507018 37 100.0 35 CCGGCTACGG ..................................... TGTCTGCACAAGCTCCTTTTCCAAGAGGCTAATTT 7507090 37 100.0 34 AGGCTAATTT ..................................... ACGAAACCTCAAACGACTCCCCCGGCAACTGGAG 7507161 37 100.0 36 GCAACTGGAG ..................................... TTGTGATGCCCTGCTGCAACGGACTTGTGGACTCGG 7507234 37 100.0 34 GTGGACTCGG ..................................... TGGGCGGTTGCAACAACGTTTAGGACTGACTTGA 7507305 37 100.0 35 ACTGACTTGA ..................................... CCACTGGCAACTCCACTTTCTATGCCATCTTGACT 7507377 37 100.0 35 CATCTTGACT ..................................... ATATTAATGCTCCTGTTTGAGCTAAATTCTGTGGG 7507449 37 100.0 35 ATTCTGTGGG ..................................... TTTGATGCACTTCTGGAAAACCGCACCTACAGTGA 7507521 37 100.0 32 CCTACAGTGA ..................................... CAAAGCCTATGATTTGATTGCCGCTGCCAATG 7507590 37 100.0 37 GCTGCCAATG ..................................... TAACGGGTGTAAGGCTCCTAAAGGAACTTTCTGATGA 7507664 37 100.0 34 TTTCTGATGA ..................................... CTTCACCGTGCTGTCGTTAAGCTCTTTGTTCTTG 7507735 37 100.0 34 TTTGTTCTTG ..................................... GACAAATCAAGGACCGACTTTTGGGAGGTGGTCA 7507806 37 100.0 33 GAGGTGGTCA ..................................... TTAAAGTCCCGAGCCAAACGTTTGATATCTTTC 7507876 37 100.0 40 GATATCTTTC ..................................... CCACAAGGATTCGAGTAACCGAGAGTCTTCCATCCGGTCA 7507953 37 100.0 33 CATCCGGTCA ..................................... GCAGTTAAGGCAAACACCGCGCCACCGATGCTG 7508023 37 100.0 34 ACCGATGCTG ..................................... AAATACATAGGGGTGACTGCAACTGCTACAATAA 7508094 37 100.0 33 GCTACAATAA ..................................... ACGGTATGATGGCTGGAGCGGGGATGATAATAG 7508164 37 100.0 34 ATGATAATAG ..................................... ATAGGTCTACTGCGTTTTGCCATAAAGTCCACAA 7508235 37 100.0 37 AAGTCCACAA ..................................... AACGGTGAGGTAGAAGACTACTATTTTAATTCCAAAA 7508309 37 100.0 35 AATTCCAAAA ..................................... TGGCATATATTTCAACGCCATAAAGTCCGGCAACT 7508381 37 100.0 36 TCCGGCAACT ..................................... ACGCCGTAAATGCTGATTGGGGTAAAAATTTCCTCA 7508454 37 100.0 35 AATTTCCTCA ..................................... GCAAATACAGGTATCCCACTGATGTCCCCCCAAGG 7508526 37 100.0 34 CCCCCCAAGG ..................................... TTTGACAGCCCAATGCGCCTAATTTCAGCCGATA 7508597 37 100.0 35 TCAGCCGATA ..................................... TAGCCTACTGTGAAACTTACGATAATCGGTTTATC 7508669 37 100.0 38 TCGGTTTATC ..................................... AAATGAATGGTATGGGCATTGCGCCAAATACATATCAA 7508744 37 97.3 34 TACATATCAA ...T................................. ACTCAGGGATAAATCGGATATTGCCCATTTTCCA 7508815 37 100.0 35 CCATTTTCCA ..................................... CACCTAATCTCCTAAATTTGGCTGACACAATTACC 7508887 37 100.0 33 CACAATTACC ..................................... TTTGACTCGTTACGTTCGCCCCGCTGAGGTGGA 7508957 37 91.9 34 CTGAGGTGGA ............CTA...................... AACAGGGTTAATCTCGTCCTGTTCTGTCTCGGAA 7509028 37 91.9 33 TGTCTCGGAA ............CTA...................... CCAGGAATGGAAAGCAGGGATTCTCCGGCAATG 7509098 37 91.9 41 TCCGGCAATG ............CTA...................... GGTCCCCAAACCCTCTCCCCGAGAGCGATTCATCAGTTACC 7509176 37 91.9 37 ATCAGTTACC ............CTA...................... GTCGTTAGCCAACACCAACACAGTCCCATCAGTATTT 7509250 37 100.0 ATCAGTATTT ..................................... TGGGGGGATG ========== ====== ====== ====== ========== ===================================== 70 37 35 GTCCCAATGACCTCTAATCCCTTTCAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.05%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.30,-7.30] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [48.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [258,96] Score: 0.18/0.18 # # Final direction: F [5.36,0 Confidence: HIGH] >NC_019695 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3355881 37 100.0 34 AATTAATCGT ..................................... AATCAGCTCAGTCTCTTCTCTAATCTGCAACCCG 3355952 37 100.0 36 CTGCAACCCG ..................................... TATTCGAGCCATTAATCGAGTAGTAGGAAATCGCAA 3356025 37 100.0 GAAATCGCAA ..................................... GCAGTTGATT ========== ====== ====== ====== ========== ===================================== 3 37 35 GTTTCAATCCCTAATAGGGCGTTAATTGAATTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-4.20,-4.20] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [242,69] Score: 0.18/0.18 # # Final direction: R [0.45,4.5 Confidence: HIGH] >NC_019695 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3356802 37 100.0 35 NNNNNNNNNN A..................T................. GGCGACGTAGACATCCAAGATCTACTATTAGCAAA 3356874 37 100.0 41 NNNNNNNNNN ..................................... CTTTTACCTTGACTTTTCTCGTTGTCGCTTCCATCAGTTAA 3356952 37 100.0 36 NNNNNNNNNN ..................................... CGCTTTATCTCTCTCTCTTTGCAATTGGCGCATTTC 3357025 37 100.0 35 NNNNNNNNNN ..................................... ATTCAACTTCCCATTGGTTTGCTATCTATGTTCTT 3357097 37 100.0 34 NNNNNNNNNN ..................................... ACAACGAATTCAAGCATAGACTCGATCATGTCAT 3357168 37 100.0 35 NNNNNNNNNN ..................................... CCTTAGAAATCCGCATTAACCGCTTTATCAAGCGC 3357240 37 100.0 37 NNNNNNNNNN ..................................... TTAAGGTTAATCTCAAAATTAAAAACTAGCTGCTTTT 3357314 37 100.0 35 NNNNNNNNNN ..................................... ATAGCCATTCGTACACCCATCGCACCAAGAACTAC 3357386 37 100.0 36 NNNNNNNNNN ..................................... CTGGATTTACACAACGCGATCGCTCAAAATTCACAT 3357459 37 100.0 37 NNNNNNNNNN ..................................... CAGAATTAGCCGCAATCTCGCGATAGCGGGAACGACT 3357533 37 100.0 36 NNNNNNNNNN ..................................... ATTGGGACAGGTGAGCAAACCTGGGACGTTTTCGAT 3357606 37 100.0 36 NNNNNNNNNN ..................................... TTCTCGGCTCTAATTCTTGAACCCACTGCTGAATAC 3357679 37 100.0 34 NNNNNNNNNN ..................................... AGGCAAGTATAGGGGGCTTCTTTAAAAAGTCCTA 3357750 37 100.0 31 NNNNNNNNNN ..................................... GCACCAGGACGCTAACAGCAGCACCTTCCTT 3357818 37 100.0 40 NNNNNNNNNN ..................................... AAAAACGATTCTTGTCTGCTAGTACCTAATGCTCTAAACT 3357895 37 100.0 35 NNNNNNNNNN ..................................... TCTCGCCCTAATTCACAATAACCGCAATAAAAACA 3357967 37 100.0 36 NNNNNNNNNN ..................................... GGTCAACCACCCAGCACTCCCAGCCGTCGTAATCTG 3358040 37 100.0 37 NNNNNNNNNN ..................................... TTTCACCGCAGGGTACATTGCAAAAATGAATCAAATA 3358114 37 100.0 40 NNNNNNNNNN ..................................... CCCTAGTAGCTAATCCCCTATCTCCAACTCCACTCACACC 3358191 37 100.0 36 NNNNNNNNNN ..................................... TCTAATAATAATTTCCTTTAATGATGCGATTTCCTT 3358264 37 100.0 31 NNNNNNNNNN ..................................... TTCCCGGTAGCAGTGGCTGTATTGTCCTTAG 3358332 37 100.0 33 NNNNNNNNNN ..................................... CTCAATCCTTGGTGCTGAAACTTGGGCGGGAAC 3358402 37 100.0 38 NNNNNNNNNN ..................................... CAGCCATTATTTATCTCTCTAGTTATTGTCTACGTTGA 3358477 37 100.0 36 NNNNNNNNNN ..................................... TCGCGCCGCGACCGCTGCGATCATATTTTTTCCCCC 3358550 37 100.0 35 NNNNNNNNNN ..................................... TTTAGCAGCATTTTCGTCTCGCCCGTTCACTGTTT 3358622 37 100.0 34 NNNNNNNNNN ..................................... GCCCTGGGGGAGTCAATCGCGGGAGTGTATAAGC 3358693 37 100.0 47 NNNNNNNNNN ..................................... CTCATTGCTTTTCTACTCAAAAAAATCTAAGGAGTTTCTTACAATGC 3358777 37 100.0 34 NNNNNNNNNN ..................................... CGGCTAAATAGCCTTGCTGAACGGGTTTTCGCTT 3358848 37 100.0 38 NNNNNNNNNN ..................................... GCTGTAGAATTAGCCACTACATTACCAGCAGCATCAAG 3358923 37 100.0 37 NNNNNNNNNN ..................................... TCTAGTAGGAATTGCAGCTTTCTTAGACAGATATTTC 3358997 37 100.0 45 NNNNNNNNNN ..................................... CCAACCGAGTCCCAACCGAGCGATCGATGAAGTCAATCGCGCCAA 3359079 37 100.0 37 NNNNNNNNNN ..................................... TCCCCTCGTAGGTACGTTATATGCATGCAGCTAGCGA 3359153 37 100.0 35 NNNNNNNNNN ..................................... ATCGCCTTCCATCTCCACCACCGCTTTCAAATGCT 3359225 37 100.0 36 NNNNNNNNNN ..................................... TTTGCATTCTTCCTACTTCAGTTTATGCCTCTATTC 3359298 37 100.0 36 NNNNNNNNNN ..................................... TGTTTTGTAAGACGTTGCATACATATTATTAAATCT 3359371 37 100.0 35 NNNNNNNNNN ..................................... AAAGAAACTGGTTCGAGCTTTAGCAGATATCAGCC 3359443 37 100.0 39 NNNNNNNNNN ..................................... GCAGCTCACCAGAAAGAGCATTAGCAGCATCACGGATAT 3359519 37 100.0 36 NNNNNNNNNN ..................................... TACCAATGTAGCCGCCAGTTCCAGCACCCAAAACAA 3359592 37 100.0 34 NNNNNNNNNN ..................................... CTGTCCTTCGCTCGTTTTAGCCATGTGGGAATTT 3359663 37 100.0 40 NNNNNNNNNN ..................................... CTGAAATTCCTCAAGGTGTGCGAGATTCTTTTGGGTTTCA 3359740 37 100.0 34 NNNNNNNNNN ..................................... TTCTAGCTTATCTGGAGTTTTAGGAGAATTCCTA 3359811 37 100.0 34 NNNNNNNNNN ..................................... GCGATTAGTAGTCCGTCTTTCGCTGCCCGTAGCT 3359882 37 100.0 36 NNNNNNNNNN ..................................... GTCATGTTTCCTGGCTCTCCGATAATGTCTGAAAGC 3359955 37 100.0 34 NNNNNNNNNN ..................................... TAAAACGCGATCGCTCCCCCTACTCCCTACCAAT 3360026 37 100.0 33 NNNNNNNNNN ..................................... TTCGCGAATTATCTTATTCGCAATCTTTTTGTT 3360096 37 100.0 42 NNNNNNNNNN ..................................... TGGTAAAAGCTGTCATATTCTCGGGTTAAAGTATCAGTACTA 3360175 37 100.0 34 NNNNNNNNNN ..................................... CATCAGCAAGTCTTAGCCCTAATTCGCCTGGTTT 3360246 37 100.0 35 NNNNNNNNNN ..................................... CGCAGAACTAGCAATTACAGAGTGTGTTGAATAAT 3360318 37 100.0 45 NNNNNNNNNN ..................................... TTCTTCCACGCCTTTATAGATTTACAGCACCACACACTAATAAAA 3360400 37 100.0 36 NNNNNNNNNN ..................................... CTGTTGCCGGTCAAATTATCGCAGTTAGGTACTGGA 3360473 37 100.0 38 NNNNNNNNNN ..................................... TTGAAGGCGTTTGCGGATGGTTGCAACTACGTTAATCA 3360548 37 100.0 36 NNNNNNNNNN ..................................... ATTCGGATCGAACTCAAACTCGCCCACATAGGTATA 3360621 37 100.0 40 NNNNNNNNNN ..................................... TTCCTTTGGTTTTCTTGGGTGGTTTGTCGCACTTCAGAGG 3360698 37 100.0 35 NNNNNNNNNN ..................................... GAGCAGCCGTTCGTACAGCTCGATAGCAGTTTCCT 3360770 37 100.0 33 NNNNNNNNNN ..................................... GGAGAATTAGAGGCAGATCCACGCTTCCGCTAT 3360840 37 100.0 35 NNNNNNNNNN ..................................... GGGAGAAGAGTAGTATAGGTGCTGTTGCCTCAGCA 3360912 37 100.0 1 NNNNNNNNNN ..................................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 57 37 36 GTTTCAATCCCTAATAGGGCGTTAATTAAATTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-4.20,-4.20] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [58.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [155,214] Score: 0/0.18 # # Final direction: R [0.27,4.91 Confidence: HIGH] >NC_019701 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================================== ====== 2206596 38 100.0 34 GTATGATTGC ...................................... CCACATATTTGATGGCGGATTGTGATCTTCACGC 2206668 38 100.0 35 ATCTTCACGC ...................................... ACCGAGGACGACATTTTGGAGTTGTGCCGAAGTGA 2206741 38 100.0 36 GCCGAAGTGA ...................................... TGGCGATCGAGCGGTAGATAGTCTGGGCACAGCCAC 2206815 38 100.0 38 GCACAGCCAC ...................................... AATCACCCAGAGGAGGCGATCGCCAGCTTCGGGCGCGA 2206891 38 100.0 TCGGGCGCGA ...................................... CTCCGGTGGG ========== ====== ====== ====== ========== ====================================== 5 38 35 GGTTGCACCTGGCCTTCGGGCTGGGTGAGGATTGGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-15.50,-9.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [173,757] Score: 0.18/0.18 # # Final direction: F [0.64,0.55 Confidence: LOW] >NC_019697 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2085673 37 94.6 35 GCTATTTTTG ................G.......G............ TAGCACTACCTCGGATTTAGAGCGGGGATGGTCTA 2085745 37 97.3 37 GGATGGTCTA ................G.................... AACGGCATTTTCCACCCCCCGCGCGAACTGATAGCCA 2085819 37 97.3 35 CTGATAGCCA ................G.................... AGCGGTTTAAGCTTGGGTGTAGAAATCTCATCCCA 2085891 37 97.3 32 TCTCATCCCA ................G.................... AAAATATTTAGCATCTAGGTATCGTTGATAGG 2085960 37 97.3 35 CGTTGATAGG ................G.................... AATTATTTGATTCAAAGCCTACTAAACCAACCACT 2086032 37 97.3 34 ACCAACCACT ................G.................... ATAGCTTATCCATACCACCGTCGTCGGGGGCGGT 2086103 37 97.3 38 CGGGGGCGGT ................G.................... GTCGGTGCCAAGCTGAAGTCTTGTTGTCGTCTAATCTC 2086178 37 97.3 36 GTCTAATCTC ................G.................... TTTATCCAGACACACCGACGACACGACGCAGACACA 2086251 37 97.3 34 CGCAGACACA ................G.................... CACCAGCCAAAACGAACTTTACCGCCAATCGAGT 2086322 37 97.3 36 CCAATCGAGT ................G.................... ACGGGCGAACGATCGGAGATTGTTGCCGCTGGGGGA 2086395 37 97.3 37 CGCTGGGGGA ................G.................... GCGTTCTCATTGTCAACCTTATCGACAATATTCTGGA 2086469 37 97.3 35 ATATTCTGGA ................G.................... ACGAATATTCGCTACGCCGACTCATCCGGTAAATG 2086541 37 97.3 31 CCGGTAAATG ................G.................... AAAGATCTATCAGCGATGGATCGGAGTCGAT 2086609 37 97.3 32 CGGAGTCGAT ................G.................... GAAGGGGGTTTAATACCGCCAGATTCACCATG 2086678 37 97.3 33 ATTCACCATG ................G.................... AAGGGACTTCTGACGGTTGCTGTCTATGTCTAC 2086748 37 97.3 32 CTATGTCTAC ................G.................... AAAGGTGGCGATTTTGGCGGTACGGTTACGGC 2086817 37 97.3 35 CGGTTACGGC ................G.................... TCCAGCCATATAAAAATCGCAAGCCCCAGTATGGT 2086889 37 97.3 39 CCAGTATGGT ................G.................... GATGTATGTCCCTTCACCAGATGGGTTAGGATTGTTGAT 2086965 37 97.3 34 GATTGTTGAT ................G.................... TTCCAAGCCACGGGTGTGACCGCTGTATCTCCAG 2087036 37 97.3 33 GTATCTCCAG ................G.................... GATTGAATCGATCGATTTCCGATGCCAGTTGGG 2087106 37 100.0 35 GCCAGTTGGG ..................................... GCACCAAAGCTTTAATTTGCGGCGGTCAGACCGAT 2087178 37 100.0 36 TCAGACCGAT ..................................... CTCGGTACGTAGCGGTTACAATGTGGCGATCGATAC 2087251 37 100.0 36 CGATCGATAC ..................................... GACTCAGAAATTGCTACCGATGATACTACCAACAAT 2087324 37 100.0 34 TACCAACAAT ..................................... CTGGAAGACTCACAAGTAATTTACGCATTGACCA 2087395 37 100.0 33 GCATTGACCA ..................................... CTGCGGTTAACAAAACAGAAACATCAACTGATG 2087465 37 100.0 36 TCAACTGATG ..................................... CACGGATAGACAAACTAAAATCAGTAGTGCTAACTT 2087538 37 100.0 34 GTGCTAACTT ..................................... GTGACGTCTACGTCACCCTAACAGGCGAATCCTG 2087609 37 100.0 35 GCGAATCCTG ..................................... GCACGATGGTAAAAATCCCAAGTCAGGATATGGAA 2087681 37 100.0 34 GGATATGGAA ..................................... ACCACAACAGCCCCAAGGCGAGTTTGTAAGTGCT 2087752 37 100.0 36 TGTAAGTGCT ..................................... GCTTTACTGTCTGCTTAATAAAGGATTGCGATAAGG 2087825 37 100.0 36 TGCGATAAGG ..................................... ATCGACGAAATTGAGCAATTCCTAACTCATTCGATC 2087898 37 100.0 33 TCATTCGATC ..................................... CGAGCCTACTATCGAGTATCTTTTAGAGCTGGG 2087968 37 100.0 33 TAGAGCTGGG ..................................... AAAAAGCCAATCCCACTAATCGAGAAGCAGCTA 2088038 37 100.0 39 GAAGCAGCTA ..................................... CGGGGTACACCTGGGGGTAGCACTAGCGGTATTGCGCTA 2088114 37 100.0 36 TATTGCGCTA ..................................... CACCACGGGTAAAACCTCGTGCAACTCGGAGCTGGG 2088187 37 100.0 36 CGGAGCTGGG ..................................... GATCCGCACTTGGGGCAAATAGCATCGACACAGGCA 2088260 37 100.0 34 GACACAGGCA ..................................... GAGCGGGAAATTTATCGAGACTGCTGACTTTCCA 2088331 37 100.0 38 TGACTTTCCA ..................................... TTGATTTTAACCTATGTCTCTAAATCCTCCCATCGGTG 2088406 37 100.0 39 CCCATCGGTG ..................................... GACAAAATCGGTCAATTTTTCCATCTCGACCTCGCGACT 2088482 37 100.0 33 CCTCGCGACT ..................................... ATAACCCACACTTGCTCGTGTCTGGCGTTCGCT 2088552 37 100.0 38 GGCGTTCGCT ..................................... ATATTATCTGATTGTCAACAAAATCGGCTAGTATATTA 2088627 37 100.0 34 TAGTATATTA ..................................... ATCGTACCCAGAATCGGATCTGTCCTTGGGTGTT 2088698 37 100.0 38 CTTGGGTGTT ..................................... GTGTGCTGGGTCGGCACCTCCGAGTTACCGACAATCAA 2088773 37 100.0 34 CGACAATCAA ..................................... CAACAGCCACCGCTGCCCGATGGAGCCATCTACT 2088844 37 100.0 32 GCCATCTACT ..................................... TTTGCCGATTTGGGTACGCGAGCGAGCAAGTA 2088913 37 100.0 33 CGAGCAAGTA ..................................... GCAAGGCAGCAGGTCAAGCACCAACGCGAGATA 2088983 37 100.0 35 ACGCGAGATA ..................................... CGTTGACGGTTTCTGTCCGTCCTTCTGCTGAAGAT 2089055 37 100.0 35 TGCTGAAGAT ..................................... AGGATGTAACGCCAAGTACCAACCCACCCACGGCA 2089127 37 100.0 ACCCACGGCA ..................................... GGCTTCTATT ========== ====== ====== ====== ========== ===================================== 49 37 34 GTTCCAATCCTCGATCAACCCGAAAGCCGATCGCTAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [10,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.20,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1729,172] Score: 0.18/0.18 # # Final direction: R [0.55,0.78 Confidence: LOW] >NC_019701 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2206597 37 100.0 35 NNNNNNNNNN ..................................... CCACATATTTGATGGCGGATTGTGATCTTCACGCG 2206669 37 100.0 36 NNNNNNNNNN ..................................... ACCGAGGACGACATTTTGGAGTTGTGCCGAAGTGAG 2206742 37 100.0 37 NNNNNNNNNN ..................................... TGGCGATCGAGCGGTAGATAGTCTGGGCACAGCCACG 2206816 37 100.0 39 NNNNNNNNNN ..................................... AATCACCCAGAGGAGGCGATCGCCAGCTTCGGGCGCGAG 2206892 37 100.0 38 NNNNNNNNNN ..................................... CTCCGGTGGGCAATCGGTTGTTACTTGTGGCTCAATTG 2206967 37 100.0 31 NNNNNNNNNN ..................................... GAATCTGTTGTCTGGTGATTCATCGTCACCG 2207035 37 100.0 37 NNNNNNNNNN ..................................... TAACCTTGCCATACGAGGATTAATCAAAGCTATGTGA 2207109 37 100.0 36 NNNNNNNNNN ..................................... ATCGAGCGAGCCAAACAATTTGCGCTGAACTTCCAA 2207182 37 100.0 35 NNNNNNNNNN ..................................... AATTCCCGTCCCTGGTATTTATCGAAATATTGGCT 2207254 37 100.0 35 NNNNNNNNNN ..................................... TAGTCATCATCGGCTTAAGCAATGCAGCGATCGCC 2207326 37 100.0 35 NNNNNNNNNN ..................................... GTTGGCGATCGCACCTGGTAAAACCTGATCTGGCG 2207398 37 100.0 34 NNNNNNNNNN ..................................... AATCACCCAGAGGAGGCGATCGCCAGCTTCGGGC 2207469 37 100.0 34 NNNNNNNNNN ..................................... ACCTGAGCAGCAATTATCTTTGGTTGGCGATACC 2207540 37 100.0 33 NNNNNNNNNN ..................................... TCTGTACAGTTCGTGGGCGATGTTACCTATGTT 2207610 37 100.0 37 NNNNNNNNNN ..................................... AATAAACTGCCTGACGGTGTGAAGAAAAATGTAGGTG 2207684 37 100.0 44 NNNNNNNNNN ..................................... ATGGGCTGCCACTGTTAAGACTACGTGGGCTGAGTACAACTCAA 2207765 37 100.0 33 NNNNNNNNNN ..................................... GATAATAGAGAAATCCAAAAATTACCTATTGGC 2207835 37 100.0 33 NNNNNNNNNN ..................................... TCGGTCAGGTCATCGAACTTGATTTTGGTCAGC 2207905 37 100.0 33 NNNNNNNNNN ..................................... ACAGTAATGAGAGCCTTTGACAGGGCGATTGCC 2207975 37 100.0 35 NNNNNNNNNN ..................................... TAAATATCCAGCGGCTAAAGGCAATGCCGCCAATA 2208047 37 100.0 33 NNNNNNNNNN ..................................... AGTTTGACGAGAATTACCCGCAGTGCTTGTTAG 2208117 37 100.0 37 NNNNNNNNNN ..................................... AACTTTCATACCCTTCACCTCATTTACTACACGCCGT 2208191 37 100.0 36 NNNNNNNNNN ..................................... ACCTACGCATCAACGCCACCACTGGCAACAGCAACG 2208264 37 100.0 36 NNNNNNNNNN ..................................... ATCTATGCCCCATCTAGCTTGCGATTGCTACATCTG 2208337 37 100.0 36 NNNNNNNNNN ..................................... TTTTCGTTTGCCACTTTAGTTAGTTTTGGCGATCGG 2208410 37 100.0 35 NNNNNNNNNN ..................................... CAATCGCCCAATATATACTGTGGCCAGAAGCCAAG 2208482 37 100.0 34 NNNNNNNNNN ..................................... ATTGTCACCATGTCGGCGCAGGCATCGCCAACAT 2208553 37 100.0 37 NNNNNNNNNN ..................................... GGTGTAATCACCACTGACGAAATTATTGTTAGTTAAA 2208627 37 100.0 42 NNNNNNNNNN ..................................... AGGTTCAGTTTGGTTCTGCCGGGATTGGGAAGCCGATCGCAG 2208706 37 100.0 35 NNNNNNNNNN ..................................... CTATGCAACTCTTCTGATGCTTCATATCTAGCGAT 2208778 37 100.0 36 NNNNNNNNNN ..................................... AAGGAATTTTGCTCAAGCTCACCCCGAATCAACATT 2208851 37 100.0 36 NNNNNNNNNN ..................................... TTCTATAACGAATTGAGGCGGTGGGAGCCTCTCAAT 2208924 37 100.0 35 NNNNNNNNNN ..................................... ATGTGCTGCCCTACTTGCAGTCTGAGGCAACGGCG 2208996 37 100.0 35 NNNNNNNNNN ..................................... TGGACTCAGGCCAACTCATGTTTATTGTGTATATG 2209068 37 100.0 35 NNNNNNNNNN ..................................... CTTTAACTCGCATTAGGGCGATCTCTTGCGAATCG 2209140 37 100.0 35 NNNNNNNNNN ..................................... ATTCAAACTGGCCTCTGATCTGTGTAGGTTGGCAG 2209212 37 100.0 37 NNNNNNNNNN ..................................... GCTGATTAGCCATTTGCGACCAGCGGTTTTGTGTCAG 2209286 37 100.0 35 NNNNNNNNNN ..................................... AGGGAAATAACGACATGGCAGTTATTGATATTGAG 2209358 37 100.0 34 NNNNNNNNNN ..................................... TGGTATGACTGGCGGCATCCCACTATGCGCCGAT 2209429 37 100.0 35 NNNNNNNNNN ..................................... ACTCCATAAACTTTATAGACATATTTCAAAGCAAG 2209501 37 100.0 36 NNNNNNNNNN ..................................... ACTGCAACGCGACGCTAATGGAAACAAGCAGCTAGC 2209574 37 100.0 35 NNNNNNNNNN ..................................... GATCTCTGGAACAAGAAGGTTCTTGTATGTTGAAG 2209646 37 100.0 35 NNNNNNNNNN ..................................... GATCGCCAGATCTTGAGAACCAGCCGAAGTCGCGG 2209718 37 100.0 36 NNNNNNNNNN ..................................... GTTTAGGATCTGTTGGGCAAACTGCTGTCTTGTCTG 2209791 37 100.0 36 NNNNNNNNNN ..................................... CCAGAGGTGCGCAATTATGCCTAGTTGTTATTTGTG 2209864 37 100.0 36 NNNNNNNNNN ..................................... TTGTCCCCGAATAAGCTTTAAAATCTAGCGTCTCTA 2209937 37 100.0 35 NNNNNNNNNN ..................................... ATTTCGGTCACTGTTTCGAGGACTTGCTGTCGAAT 2210009 37 100.0 35 NNNNNNNNNN ..................................... CCTTAGTGATCCAAATACTTGCCACTTTCTGGTGG 2210081 37 100.0 35 NNNNNNNNNN ..................................... AGCCATCCTAAGTCTTGCAAGTGCCTGGGTTTAAG 2210153 37 100.0 37 NNNNNNNNNN ..................................... ACTCGCCAGCCGCTTTGCTAATATTATCACCGCCTCA 2210227 37 100.0 34 NNNNNNNNNN ..................................... ATCTCCTCCTCCTGGGCTTGATCAGCCTGCGCAG 2210298 37 100.0 35 NNNNNNNNNN ..................................... GCGCTGTGTTTAACGCAAATGTGTTGCGCGATCCA 2210370 37 100.0 34 NNNNNNNNNN ..................................... ATCTTTATTGTTGCTGTATGGTGGGTTGCCATAT 2210441 37 100.0 38 NNNNNNNNNN ..................................... ATGATGAATGCTTTTTCGTGCGCATCTCGCGTTACATT 2210516 37 100.0 34 NNNNNNNNNN ..................................... TGATTGGAGTAGGGCTGTTCTTACGGCCTCGAAT 2210587 37 100.0 36 NNNNNNNNNN ..................................... TATTTGATGGTATGCAGGTTTGTCGTTTTTGAATAA 2210660 37 100.0 35 NNNNNNNNNN ..................................... AAAAGAACCAAGGCAGGCCGCCTGTGACCTGCACC 2210732 37 100.0 39 NNNNNNNNNN ..................................... AAGAGATCGGCTTTAGCGAACAAGTCGAGGTGATCGAAA 2210808 37 100.0 35 NNNNNNNNNN ..................................... AGGGCGATATGTTTGCCAGGATCGTGCAAGACGCT 2210880 37 100.0 37 NNNNNNNNNN ..................................... AACCAGGGCATTGCAATCTCAACTATTAGATATTGAC 2210954 37 100.0 34 NNNNNNNNNN ..................................... AACTGGGTAGCCGTCAAATGTTTCATAGGTCAAC 2211025 37 100.0 35 NNNNNNNNNN ..................................... GACGATATTATTCATTTGTTGACCTCGACCTCTAT 2211097 37 100.0 36 NNNNNNNNNN ..................................... TCGATCTCTTAGTGCTAGCCCCGTCTCACCTTCTAG 2211170 37 100.0 35 NNNNNNNNNN ..................................... CCATGTGTTCTTTACCAATGCCAAGACCATCGCAG 2211242 37 100.0 36 NNNNNNNNNN ..................................... AGGCACTCCCAGATTCAACCAACCCGCTGCAACATT 2211315 37 100.0 37 NNNNNNNNNN ..................................... AACTTTCATACCCTTCACCTCATTTACTACACGCCGT 2211389 37 100.0 35 NNNNNNNNNN ..................................... CCAGTAGGGGCGCTCAGTCAATTCAATAAAACCGA 2211461 37 100.0 35 NNNNNNNNNN ..................................... GGGCAGGGATAGCTGTTATAATCAGAGCGTCAACA 2211533 37 100.0 34 NNNNNNNNNN ..................................... AGCCACACAGCCCAGGGTTAGCTCCACTGCGGTC 2211604 37 100.0 36 NNNNNNNNNN ..................................... GATCCCACTTCTTTACGCTAACTGGGATCTATTGTT 2211677 37 100.0 34 NNNNNNNNNN ..................................... CAGGGATATTAACTACAACATCCACCCGCACCGC 2211748 37 100.0 38 NNNNNNNNNN ..................................... AAAGATAAACCTGGCGAGCGTTTTTTTGTGTCTTGGTA 2211823 37 100.0 37 NNNNNNNNNN ..................................... AAGTTTGTCATTTTATTGCTGGCACAATTGTCAAAAG 2211897 37 100.0 34 NNNNNNNNNN ..................................... ATCGTTGCCTCTAGCTCAGTTAGTTTGCTCATCG 2211968 37 100.0 36 NNNNNNNNNN ..................................... TGTCTTAACAACCTGGTGAAACACAAAGTTGTTGGT 2212041 37 100.0 36 NNNNNNNNNN ..................................... TTTAACTCTTTTAATTTGTTCTCTCTCCTCTGTGGG 2212114 37 100.0 38 NNNNNNNNNN ..................................... AGCCCTTTCCCTGCCAACAAATTATCTCTGTTGTCAAT 2212189 37 100.0 40 NNNNNNNNNN ..................................... TTCTTTTGATTCGATCTGCAAGCCGCGTAAGCCTCGATAG 2212266 37 100.0 34 NNNNNNNNNN ..................................... AGACCCAGCGATCGCATCCGCGCGATTGTCCCAA 2212337 37 100.0 1 NNNNNNNNNN ..................................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 80 37 35 GTTGCACCTGGCCTTCGGGCTGGGTGAGGATTGGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-12.50,-6.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [174,1352] Score: 0.18/0.18 # # Final direction: R [0.37,0.55 Confidence: LOW] >NC_019701 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 3090463 35 97.1 40 ATGTTCCCCA .......................T........... ACCCGACGAACACCCTATGGCCGTCAAAGCGGTTAACAAG 3090538 35 97.1 46 GGTTAACAAG .......................T........... CTTGCTGAACAGGGCTGGTGTGTTGTTGGTGACCAGAACGACGGTG 3090619 35 97.1 39 AACGACGGTG .......................T........... TTGAAGCAATATCATCATTAACAGACATTGATGCATATA 3090693 35 97.1 37 GATGCATATA .......................T........... CCCCACCCCTCAGGTGGAGTTGGTTAGCTTCAGGCCA 3090765 35 97.1 49 CTTCAGGCCA .......................T........... TCCACATGGCAGCTAATTTTGCTATTGAGCTTGCAACTCCAGCAGGCAA 3090849 35 97.1 40 CAGCAGGCAA .......................T........... TCTTTTGCTTTAAAATTTTACTCACCGATCTTGTTTTTCG 3090924 35 100.0 46 TTGTTTTTCG ................................... TTCAAAGCGAATGGAACAAGCTGCGCAACACGTGGCTCGACCATGT 3091005 35 100.0 44 TCGACCATGT ................................... AGACCGAATTGGCCCATCTGCTTCTAGCGCAGTTGATCAGACAA 3091084 35 100.0 40 GATCAGACAA ................................... CCAGTCTTGGTCTGTCCAAATCTGAGATACAGGCCGAAAA 3091159 35 100.0 39 AGGCCGAAAA ................................... AGCTATCAAGATGCTTTCTGGATCGAACTGACTGGTCGT 3091233 35 100.0 45 GACTGGTCGT ................................... TCTGACGATGACCAATATCATGTAAAACATTCCAACAGAGACGGT 3091313 35 100.0 CAGAGACGGT ................................... AGCCCCAATT ========== ====== ====== ====== ========== =================================== 12 35 42 GTTTCAGTCCCCTTGCGGGGTAAAGGGTTTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [7,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [118,429] Score: 0.18/0.18 # # Final direction: R [0,1.33 Confidence: HIGH] >NC_019701 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2213724 37 100.0 36 CTTGTACCCA ..................................... AAGTATTGAGGGTGGGATCACGTTAACATTTCGCAT 2213797 37 100.0 36 CATTTCGCAT ..................................... AAGTATTGAGGGTGGGATCACGTTAACATTTCGCAT 2213870 37 100.0 36 CATTTCGCAT ..................................... AGTCTGGGAAACGTCAAAAGTGGCTACACCTCTAAA 2213943 37 100.0 37 CACCTCTAAA ..................................... CTTTCGAATCGGTTTCTTTCGCTATCAAACGAATAGG 2214017 37 100.0 37 AACGAATAGG ..................................... TAATTTACCACTGGCTATCCACTGGTTACCCATCAGA 2214091 37 100.0 37 ACCCATCAGA ..................................... ATCATCAGATACATCGTGGCTACACTTAGGCGATCGC 2214165 37 100.0 34 AGGCGATCGC ..................................... GGTCTATGTCCATGCAATAGATGGTTTGCTAGAC 2214236 37 100.0 38 TTTGCTAGAC ..................................... ACCGATTAAAACCGGAAGTGGCCGATTTGATCCGTACT 2214311 37 100.0 37 GATCCGTACT ..................................... AGGATCAAATCTCAATACTATCCAGCCTATTTAAGAT 2214385 37 100.0 TATTTAAGAT ..................................... AATCCAGGCG ========== ====== ====== ====== ========== ===================================== 10 37 36 GTTGCACCTGGCCTTCGGGCTGGGTGAGGATTGGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-12.50,-6.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1350,241] Score: 0.18/0.18 # # Final direction: R [0.55,0.64 Confidence: LOW] >NC_019701 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 3106206 35 100.0 38 AAAGGTTCTT ................................... TCCTCGAAGGTTTTACCCAAAACTCAGGAGCAAAAAGA 3106279 35 100.0 42 AGCAAAAAGA ................................... AATGCTATTTCTATTCACGCATTTAATTCAGTACAAAGAATT 3106356 35 100.0 37 ACAAAGAATT ................................... GAACTAACGCGTGCAATGCATGTATCGGTTCTTGGGA 3106428 35 100.0 40 GTTCTTGGGA ................................... AAACTGGAAAAACTGTTGTTGTCCCAGAGGATTATTTGCA 3106503 35 100.0 39 ATTATTTGCA ................................... ATGCACCAATTAATTTTGCTGTGTTGGATGAAACCGCCA 3106577 35 100.0 44 GAAACCGCCA ................................... TTTCCGCTATTTGTATAGCTGCGGTCTTTTTGGGGGCATGTTCA 3106656 35 100.0 39 GGCATGTTCA ................................... CAGTATTTATAGAGGATCCAAAACAAGGAAGGAAAGAGG 3106730 35 100.0 38 AGGAAAGAGG ................................... ATACTCTGATTTATATGATCTCTATTTACATTACAAGT 3106803 35 100.0 35 CATTACAAGT ................................... GCTTTGAAGTAGTTGGCGAATCCCTCAAAGGGATC 3106873 35 100.0 CAAAGGGATC ................................... CTCAGTTTAT ========== ====== ====== ====== ========== =================================== 10 35 39 GTTTCAGTCCCCTTGCGGGGTAGTGGGTTTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,11] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [181,41] Score: 0.18/0.18 # # Final direction: R [0.18,0.74 Confidence: MEDIUM] >NC_019701 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3411179 37 100.0 36 CTCTGGCAAG ..................................... ATCACCCAGGGATTTATACTGGCCGTGCGGAACGAC 3411252 37 100.0 40 GCGGAACGAC ..................................... CCCTGGACAAAGAGAATGATGCAGTAACAAGCTATATCAG 3411329 37 100.0 35 GCTATATCAG ..................................... CCTTTGATTATGGGCAGCTTGATGCAGAGACCAGG 3411401 37 100.0 35 AGAGACCAGG ..................................... CAGGGGCGAAGGGCAGATTGCTCCAGGAGCTACGC 3411473 37 100.0 35 GGAGCTACGC ..................................... TGTCGCATCAAGAAGCGAACTTCGCCAGGGTATGT 3411545 37 100.0 38 CAGGGTATGT ..................................... CCCAGCGCACACCACTTTTGTTTGACCCGACACTAAGG 3411620 37 100.0 GACACTAAGG ..................................... CACAGACAAC ========== ====== ====== ====== ========== ===================================== 7 37 36 GTTTCAGTCCCCTTGCGGGGTAAAGGAGCGTTGCAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [7,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [115,1416] Score: 0.18/0.18 # # Final direction: R [0,0.92 Confidence: HIGH] >NC_019701 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3411771 37 100.0 34 TTGTTTTGCC ..................................... TCCAGAATTTGACGCGGAATTGGGGGAGGTGAAT 3411842 37 100.0 35 GGAGGTGAAT ..................................... AAATGCCTGTAAGTCGCTTAAGGTAAAAGCCATAT 3411914 37 100.0 36 AAAGCCATAT ..................................... ACGATTCGCAAGAGATCGCCCTAATGCGAGTTAAAG 3411987 37 100.0 34 CGAGTTAAAG ..................................... TCGCTGCCAATTCTTATCCTTATTGGCCTGGATT 3412058 37 100.0 35 GGCCTGGATT ..................................... TTTGCCACCGCCAGATTGGAGCCAAACAGCTTAAT 3412130 37 100.0 38 ACAGCTTAAT ..................................... CCGATCGCCTTGCGCAACGCCTTAACTATGTTTTGCCT 3412205 37 100.0 36 TGTTTTGCCT ..................................... CGACTGATGCCTTACACAATAACTCAACCACACTGA 3412278 37 100.0 39 ACCACACTGA ..................................... AATGATCGAGGCATGATTAACTACCCTCCTTTGGTGTTT 3412354 37 100.0 37 TTTGGTGTTT ..................................... ATCCAGGGCTGGGAGCGGTGCGGGTAGAGTTGTAAAA 3412428 37 100.0 35 AGTTGTAAAA ..................................... GTTACAAGCCAACTGCACGAACTGCACAAAATTAT 3412500 37 100.0 37 ACAAAATTAT ..................................... TAGAGGCATGTGGGGCAAGTTACAGCGGATGCCCTGG 3412574 37 100.0 38 GATGCCCTGG ..................................... CCAGCCCATGCCTGCATACCTAGGACAATCAATGCATG 3412649 37 100.0 TCAATGCATG ..................................... CGCAGGTATC ========== ====== ====== ====== ========== ===================================== 13 37 36 GTTTCAGTCCCCTTGCGGGGTAAAGGAGCGTTGCAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [7,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [707,387] Score: 0/0.18 # # Final direction: R [0.27,0.74 Confidence: MEDIUM] >NC_019701 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3106947 36 100.0 38 GTAGCTGCAT .................................... GTCTACCCTGATGGTTGCTGGAGTACATGAGTGCTTCA 3107021 36 100.0 39 GAGTGCTTCA .................................... TTTAGAAAGTGTTGCGAACACTTCTAACTCATCTACTTG 3107096 36 100.0 40 CATCTACTTG .................................... GCTGCATGAGTGCGTTTAGCTACTTATATTATTAACCCCG 3107172 36 100.0 ATTAACCCCG .................................... AGCCCTGATC ========== ====== ====== ====== ========== ==================================== 4 36 39 GTTTCAGTCCCCTTTCGGGGTAGTTGGGATGTCAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [53.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [39,284] Score: 0.18/0.18 # # Final direction: R [0.27,0.92 Confidence: MEDIUM] >NC_019701 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 3694624 35 100.0 38 ACAAAAACTA ................................... TAATCTATGCATCGAGATTGTGTCATACCAAGACTGGG 3694697 35 100.0 45 CAAGACTGGG ................................... AGGCATGTATTTTTTTGTTTAACCCTAGGAGGGTGATGGAAAAGA 3694777 35 100.0 40 ATGGAAAAGA ................................... TTTCTCACAGGAGCCCCCCACCGATGGAGAGAATGTTCTT 3694852 35 100.0 36 GAATGTTCTT ................................... CAATCTGGCTGCGCGGGCAGGGGATGTAGAGATAAA 3694923 35 100.0 39 TAGAGATAAA ................................... TTCCATACAAGAACCTATGCTGCTTTCTGTGATGAAATG 3694997 35 100.0 38 TGATGAAATG ................................... ACGCACGACTTTATGGTTGCGATGGAGAAGGATGAAGT 3695070 35 100.0 AGGATGAAGT ................................... AGCCCCTATT ========== ====== ====== ====== ========== =================================== 7 35 39 GTTTCAGTCCCCTTGCGGGGTAATGGGTTTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,11] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [143,316] Score: 0.18/0.18 # # Final direction: R [0.27,0.92 Confidence: MEDIUM] >NC_019701 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 841798 37 100.0 39 GATACCTGCT ..................................... AGTATCGGCCACCAGGCATACCTGATAACAGGTGCTCCG 841874 37 100.0 40 AGGTGCTCCG ..................................... CGATCCCATTTTCTGGGACCGTGCCCAGTGGTGCGCCGTA 841951 37 100.0 37 GTGCGCCGTA ..................................... TGGCAGTGACCCAGCCATCCGTGTCGGTGCTGTCGAT 842025 37 100.0 37 TGCTGTCGAT ..................................... ACACCATTTGACCCAGCCTCAAAACTAGGACGATGGG 842099 37 100.0 35 GGACGATGGG ..................................... TTTAGTATAGGTCACGTTTACCGGACATGTCAAGC 842171 37 100.0 36 CATGTCAAGC ..................................... TTTGGTTTTAGTGGTCATTTTTTGTTTAGGCTCTTG 842244 37 100.0 37 TAGGCTCTTG ..................................... CAGCACAGTCTTTGGTGGGATGCTGTTTTCATTGGCG 842318 37 100.0 35 TTCATTGGCG ..................................... TATTTAAATCAGTATATTTATCTAAGTAAATCAAC 842390 37 100.0 37 GTAAATCAAC ..................................... CTAACAAATTCCGCCATGTGCTTTTTGTCTATACCAA 842464 37 100.0 TCTATACCAA ..................................... AAAATAGCTA ========== ====== ====== ====== ========== ===================================== 10 37 37 ATTGCAACGCTCCTTTACCCCGCAAGGGGACTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [10,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.10,-6.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [286,49] Score: 0.18/0.18 # # Final direction: F [0.92,0.27 Confidence: MEDIUM] >NC_019702 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2786521 36 100.0 36 NNNNNNNNNN .................................... ACCGATGTTCTCACCGAAGTTGCGGAACACCTTTGA 2786593 36 100.0 38 NNNNNNNNNN .................................... TCTAAGTAGTCAGCCATAGAGCCGCTTACACCACTAAG 2786667 36 100.0 37 NNNNNNNNNN .................................... ACAGCAGTAGGTTTATTATATAATCTTGTTCTACTTC 2786740 36 100.0 37 NNNNNNNNNN .................................... GCTATTGGAACTGGCTGTCTTATAGAAGTAAGAAGTT 2786813 36 100.0 38 NNNNNNNNNN .................................... AGTAGTTTTAATACTGTCCTTGCCGAGAATGAGTATGT 2786887 36 100.0 38 NNNNNNNNNN .................................... CGTCTGAAGAGGCACAAGGAAAAGTCTTTTATCAGAAT 2786961 36 100.0 41 NNNNNNNNNN .................................... CGAAACAATGAAGAATGTTAAACTTCTAGCGGCACAAGCCG 2787038 36 100.0 40 NNNNNNNNNN .................................... CTGTAAGTCCCCATTCCTCTGCCTTTCATAAGGGCAGTTA 2787114 36 100.0 46 NNNNNNNNNN .................................... CTTGTTTACACCCATGGAGTTAATGTTATGTCTAAATCTTTTATGG 2787196 36 100.0 41 NNNNNNNNNN .................................... CTATTGGAGTTAAGTAGAGATGTGTAATAGATAATAATTTA 2787273 36 100.0 41 NNNNNNNNNN .................................... CGGTGATGATGAGCCACCTTCGGGTGAGGAGGGTGATCAAA 2787350 36 100.0 38 NNNNNNNNNN .................................... AGAGTGCCTTTGCCTGTACCCATCTGGGCATGTACCGG 2787424 36 100.0 39 NNNNNNNNNN .................................... CCGCCCACTTGATTGTTTATGATGACTTGATTAAATCCC 2787499 36 100.0 40 NNNNNNNNNN .................................... CGTGGTAGCTGAGCCTATTGCTGCTCCTAAACCAGCTAAC 2787575 36 100.0 38 NNNNNNNNNN .................................... GCGTCTCTGAACAACTCCCCAATAGAGGAATATTTCAT 2787649 36 100.0 42 NNNNNNNNNN .................................... TGAATTCACGCATCCGAGTCAACCATGTCTGGGTAAGGGTTT 2787727 36 100.0 37 NNNNNNNNNN .................................... CTCCTATCTTTCTTCTCCTTTGCAATCTAGGTTGGTC 2787800 36 100.0 40 NNNNNNNNNN .................................... ATGTTTATGCTTGGTTCAAGTATATAACAGAAGAGTTTAA 2787876 36 100.0 37 NNNNNNNNNN .................................... TATAGGAACTTATCTTAGAAGTGTATTGTTATTAACA 2787949 36 100.0 39 NNNNNNNNNN .................................... ATTGGCTTGGATACATATTAGCTGATGGATGTATACAAA 2788024 36 100.0 41 NNNNNNNNNN .................................... AAAGCGAAAGCGGTTTGGTCAGCCCCGACAAGCAAAAGGGA 2788101 36 100.0 38 NNNNNNNNNN .................................... CGCCGGGGTCGTTCAGCACCTCGAACAGCAGGTTGTGG 2788175 36 100.0 38 NNNNNNNNNN .................................... GAAAAAACTTGATGTTCAATTTCGTTCACAACTCGACA 2788249 36 100.0 38 NNNNNNNNNN .................................... TTGCCAATCGTGTTCAACCACACGGTAGAGCTAACTCA 2788323 36 100.0 37 NNNNNNNNNN .................................... ACTTGTCTGCACTTCATTAGGATTGCTAGGATTGAGT 2788396 36 100.0 39 NNNNNNNNNN .................................... TAGTTCAGGTGGGCAAACCATAATTAACGCAATCACAAT 2788471 36 100.0 37 NNNNNNNNNN .................................... GCAACATTGGGAACAACTGATCCAGTAACCTATCCTA 2788544 36 100.0 38 NNNNNNNNNN .................................... CGAATCCGATATATGGGAATCCCTCAATATTAATTAGA 2788618 36 100.0 38 NNNNNNNNNN .................................... AACTTGGAATGTCAGTTTAGTAAATTGATTGAGAGATT 2788692 36 100.0 37 NNNNNNNNNN .................................... TAAAAGTAGAAACAAAAGAAGGCGAAGGCTCAATATT 2788765 36 100.0 45 NNNNNNNNNN .................................... TACGGCTTATTCCACTACGCCTTCATCGAGTTTAACTGTAAGCGG 2788846 36 100.0 41 NNNNNNNNNN .................................... TTCGGCGGAGCATCCGACTTCACCTTCACCCCTGACGGGAA 2788923 36 100.0 43 NNNNNNNNNN .................................... CATGAACTATCCGATGATGACCATTGATGCATGCCTTTTCGAG 2789002 36 100.0 39 NNNNNNNNNN .................................... ATTTGCGAGAAAGTGAGCGCATAACTTTGCACGAAGAAG 2789077 36 100.0 38 NNNNNNNNNN .................................... AGCATAAGCGGGTTAACTGCCTTCTGCACTCAATACAG 2789151 36 100.0 39 NNNNNNNNNN .................................... ACCAACTACACAAAGGATTATTTCAGTAGTTCTTCTATT 2789226 36 100.0 38 NNNNNNNNNN .................................... ATGAACCGTGCTACCAAGCATGCAGATAAGCCTAATAA 2789300 36 100.0 39 NNNNNNNNNN .................................... CATCATCTGTCATGTAATAGAACAGACGAGCCAAGTCAA 2789375 36 100.0 38 NNNNNNNNNN .................................... CCTTAATGCCAAGTTAATTGGCTTAGCTACTCTTGTTG 2789449 36 100.0 36 NNNNNNNNNN .................................... GCGGAGTTACCTAAGTTTGGTATATGGTCTGGTAAT 2789521 36 100.0 41 NNNNNNNNNN .................................... GTATTGAGTCACCCTACCAGCCCTGCTTCTGGGCGGTTAAG 2789598 36 100.0 36 NNNNNNNNNN .................................... GTGATAATTAATGAGTGATGAACCAATTGAGCTTCT 2789670 36 100.0 37 NNNNNNNNNN .................................... TTAAAGCCAATGCAGTTAAGTCTGATTTAGGTAATTG 2789743 36 100.0 37 NNNNNNNNNN .................................... CGTAACCGAAGCCAAGACCGCACCTAAAAATCAATAT 2789816 36 100.0 39 NNNNNNNNNN .................................... CCCTAAACCATCGCTTATAGCAAGTTTTACACTTTTTAA 2789891 36 100.0 48 NNNNNNNNNN .................................... CTGCCGAAGGGGGCGATCTTGATGCTTGCCGTAATTGGATGTGGGGAA 2789975 36 100.0 37 NNNNNNNNNN .................................... TGTGGAAATCTGAAAGGGTGCCATTTAGCAGATCACA 2790048 36 100.0 41 NNNNNNNNNN .................................... ATGATCGCGCCAGAGATCAGGGAGATTTCACAGTATCTTAT 2790125 36 100.0 36 NNNNNNNNNN .................................... AGAGCCTAGCCAAGTAATGTCGCCAGTTATCGGTAA 2790197 36 100.0 37 NNNNNNNNNN .................................... AATACATTGGCATGCTGGTTGTTAGAGGTAAAGCTCC 2790270 36 100.0 37 NNNNNNNNNN .................................... CTGTGGTGGTTCATGCAATGAGTTGACATATCTCACA 2790343 36 100.0 39 NNNNNNNNNN .................................... ATAAAGGCGCTAATCTTCTTGCTATCCTCGTCTTCCACA 2790418 36 100.0 42 NNNNNNNNNN .................................... ATAGCTCTAAGGTGATTGGTAAGACCTTTGAAACATTGGTTG 2790496 36 100.0 42 NNNNNNNNNN .................................... TTCGAGAAATTTGATACCTTCTTCCATAATTCTCCAAACTAA 2790574 36 100.0 40 NNNNNNNNNN .................................... TTTAATAGCTTTGAGTATCTTACGGATAGTCTTTCCGTTA 2790650 36 100.0 37 NNNNNNNNNN .................................... ATATAAGACTCAACTTAGTTTCTCTTTTCGCATTGGT 2790723 36 100.0 39 NNNNNNNNNN .................................... TTATATACCCATCGCCCCTGTATTAAGTTATCAGCTACA 2790798 36 100.0 39 NNNNNNNNNN .................................... TATGTCAATTCCTTACATGAACCACCACAGTTGCTATCC 2790873 36 100.0 39 NNNNNNNNNN .................................... CAAGGATGTGAACCAGCGGTTCAAAGTCCGCTTCATCAT 2790948 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 60 36 39 GTTTCCAATCAATTAGGTTCCCTAGCGAGTAGGGAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.20,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [195,135] Score: 0/0.18 # # Final direction: F [0.37,0 Confidence: MEDIUM] >NC_019703 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 2281101 24 100.0 51 NNNNNNNNNN G.CT.............T...... TTGCGGTGAGACTTGAACGTTACGGTCTGGGAGGTATCGCCGCCAGTAGCG 2281176 24 100.0 47 NNNNNNNNNN ........................ ATGCGGTGAGACCGCTGGCGTTCCAGTCAAAGTTTTTGAGTTGCTCG 2281247 24 100.0 50 NNNNNNNNNN ........................ GTGCGGTGAGAGACGCAAAAGTGGGCGAGGTGATCGTTGCCGAGGGGCAG 2281321 24 100.0 49 NNNNNNNNNN .................T...... TTGCGGTGAGACTCCAAGCATTTTTTGCTGTCCGAAAGCACTCTCTCGG 2281394 24 100.0 47 NNNNNNNNNN .................T...... TTGCGGTGAGACGGTAGCTTTGAAAGATGCCCTTGATCTGATCCTTG 2281465 24 100.0 48 NNNNNNNNNN .................T...... TTGCGGTGAGACCCTAGGGTGTAGGTGGCATAGTCCACCGTGTTGATG 2281537 24 100.0 48 NNNNNNNNNN .................T...... TTGCGGTGAGACGGTTGGGGCTCCGCAGCTGCGGCTTCGGGTGCCACG 2281609 24 100.0 49 NNNNNNNNNN ......................A. ATGAGGTGAGACATCGGAGCTGCTAATGAAGACGGCGAAGGTGCCATGG 2281682 24 100.0 48 NNNNNNNNNN ........................ TTGCGGTGAGACAGCATTTTAGGGTGCCATTAGCCAGTTTGGCCGCTG 2281754 24 100.0 49 NNNNNNNNNN ........................ TTGCGGTGAGACAATGATCCGCTCTTCGGGGATCTCCCGATTTGGGATG 2281827 24 100.0 48 NNNNNNNNNN ........................ TTGCGGTGAGACAGCTTGAATATGGGATCTGGAGCAAATGGCTAGAAG 2281899 24 100.0 46 NNNNNNNNNN ........................ ATGCGGTGAGACCTCATAAGAGGGGAGGAAGGAGTTGAGGACCGTG 2281969 24 100.0 52 NNNNNNNNNN ........................ ATGCGGTGAGACTGCTGGCTGCTCGGCTCGACGCACCAAGGTTGGTGCCCCT 2282045 24 100.0 48 NNNNNNNNNN ........................ ATGCGGTGAGACGCAATCAATCGCGTCAGCGGGCGATCGATTTGATTT 2282117 24 100.0 47 NNNNNNNNNN ........................ ATGCGGTGAGACCCTTCCAGTTGCCGTCCAAAAGTCGTGCACGCTCT 2282188 24 100.0 47 NNNNNNNNNN ........................ ATGCGGTGAGACAAGCCGTCGGGCGGCCTGAGCCGTCGTCCTCGAAT 2282259 24 100.0 48 NNNNNNNNNN ........................ ATGCGGTGAGACCTCAGCGCTCAGCTTCACGGCACCACCCACTCATCT 2282331 24 100.0 48 NNNNNNNNNN ........................ ATGCGGTGAGACGCCCAAGTCCGATAGACCCCAATCTATATCAAGTGT 2282403 24 100.0 47 NNNNNNNNNN ........................ ATGCAGTGAGACGTGGTCGAAATCGGCTCCCTGCGCCGTCTCCAGGT 2282474 24 100.0 52 NNNNNNNNNN ........................ ATGCGGTGAGACAACGGTTGCTGTGTTCCCGCTCGCAAAGCGGTCTGCTCCT 2282550 24 100.0 47 NNNNNNNNNN ........................ ATGCGGTGAGACCGCATAGCCGATGTCGTTGTCATCGTCGTACTGGT 2282621 24 100.0 48 NNNNNNNNNN ........................ ATGCGGTGAGACGTGCTGATTTTAGGCCTAATTTTAGGCAAGTCTGTT 2282693 24 100.0 54 NNNNNNNNNN ........................ ATGCGGTGAGACCTACCAGGGTTCTTCCCTCTACCTGCACTGATGGCTATCCGT 2282771 24 100.0 1 NNNNNNNNNN ........................ NNNNNNNNNN ========== ====== ====== ====== ========== ======================== 24 24 48 CTTCAAAGGGGCCGCATCTTGAGA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [48.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [8,243] Score: 0.18/0.18 # # Final direction: R [0.37,0.86 Confidence: MEDIUM] >NC_019703 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2281176 36 100.0 35 GCCAGTAGCG .................................... CGCTGGCGTTCCAGTCAAAGTTTTTGAGTTGCTCG 2281247 36 94.4 38 GAGTTGCTCG ........................G..........G ACGCAAAAGTGGGCGAGGTGATCGTTGCCGAGGGGCAG 2281321 36 94.4 37 CGAGGGGCAG .................T......T........... TCCAAGCATTTTTTGCTGTCCGAAAGCACTCTCTCGG 2281394 36 94.4 35 ACTCTCTCGG .................T......T........... GGTAGCTTTGAAAGATGCCCTTGATCTGATCCTTG 2281465 36 94.4 36 CTGATCCTTG .................T......T........... CCTAGGGTGTAGGTGGCATAGTCCACCGTGTTGATG 2281537 36 94.4 36 CGTGTTGATG .................T......T........... GGTTGGGGCTCCGCAGCTGCGGCTTCGGGTGCCACG 2281609 36 94.4 37 GGGTGCCACG ......................A....A........ ATCGGAGCTGCTAATGAAGACGGCGAAGGTGCCATGG 2281682 36 97.2 36 GGTGCCATGG ........................T........... AGCATTTTAGGGTGCCATTAGCCAGTTTGGCCGCTG 2281754 36 97.2 37 TTGGCCGCTG ........................T........... AATGATCCGCTCTTCGGGGATCTCCCGATTTGGGATG 2281827 36 97.2 36 ATTTGGGATG ........................T........... AGCTTGAATATGGGATCTGGAGCAAATGGCTAGAAG 2281899 36 100.0 34 TGGCTAGAAG .................................... CTCATAAGAGGGGAGGAAGGAGTTGAGGACCGTG 2281969 36 100.0 40 GAGGACCGTG .................................... TGCTGGCTGCTCGGCTCGACGCACCAAGGTTGGTGCCCCT 2282045 36 100.0 36 TGGTGCCCCT .................................... GCAATCAATCGCGTCAGCGGGCGATCGATTTGATTT 2282117 36 100.0 35 GATTTGATTT .................................... CCTTCCAGTTGCCGTCCAAAAGTCGTGCACGCTCT 2282188 36 100.0 35 TGCACGCTCT .................................... AAGCCGTCGGGCGGCCTGAGCCGTCGTCCTCGAAT 2282259 36 100.0 36 GTCCTCGAAT .................................... CTCAGCGCTCAGCTTCACGGCACCACCCACTCATCT 2282331 36 100.0 36 CCACTCATCT .................................... GCCCAAGTCCGATAGACCCCAATCTATATCAAGTGT 2282403 36 97.2 35 TATCAAGTGT ............................A....... GTGGTCGAAATCGGCTCCCTGCGCCGTCTCCAGGT 2282474 36 100.0 40 GTCTCCAGGT .................................... AACGGTTGCTGTGTTCCCGCTCGCAAAGCGGTCTGCTCCT 2282550 36 100.0 35 GTCTGCTCCT .................................... CGCATAGCCGATGTCGTTGTCATCGTCGTACTGGT 2282621 36 100.0 36 TCGTACTGGT .................................... GTGCTGATTTTAGGCCTAATTTTAGGCAAGTCTGTT 2282693 36 100.0 42 CAAGTCTGTT .................................... CTACCAGGGTTCTTCCCTCTACCTGCACTGATGGCTATCCGT 2282771 36 100.0 GGCTATCCGT .................................... AGCGAGCGGC ========== ====== ====== ====== ========== ==================================== 23 36 36 CTTCAAAGGGGCCGCATCTTGAGAATGCGGTGAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [9,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-9.10,-9.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [46.7-50.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [83,231] Score: 0.18/0.18 # # Final direction: R [0.37,0.96 Confidence: MEDIUM] >NC_019729 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 4644734 36 100.0 38 GGAAAAAGGA .................................... CGAAGTTACGATAGAGGTTACGGTTAGCGACAGCTAAC 4644808 36 100.0 45 GACAGCTAAC .................................... ATTATTTTTGTATTAGCATTAACACAAAAGCTTCGGGAGATTTGT 4644889 36 100.0 38 GGAGATTTGT .................................... TCCAACGCTCTGGTTTGGAAGCCAGGAGATAGTGAAAT 4644963 36 100.0 34 ATAGTGAAAT .................................... TCCGTCAGAAGGGCAAAAAGAAGGGAAAGGTTTT 4645033 36 100.0 39 GAAAGGTTTT .................................... ATTCAAGGAGTCAAATGAATATCGCGACTATCACGTTGC 4645108 36 100.0 33 ATCACGTTGC .................................... GAAGGGCATGAACTACAGGGTCGGAAACACTTT 4645177 36 100.0 44 GAAACACTTT .................................... ATTTACAAAAGGAGGAGGTTCAAAAAAAAGTCGGGAAAAATCAG 4645257 36 100.0 38 GAAAAATCAG .................................... AAACAGAGGATTTTCGTGCCGAGCTTATTACTGTAAGC 4645331 36 100.0 38 TACTGTAAGC .................................... ACTTTTGGCAAATTTCACAACCTTTAACGGTGATTGGT 4645405 36 100.0 35 GGTGATTGGT .................................... ATTCAAGGAGACTTCGATGCCGGCACAATGTCGGT 4645476 36 100.0 36 CAATGTCGGT .................................... TCTTGACATCTGTTTGAGAGGGGATATTTTTAAACA 4645548 36 100.0 36 TTTTTAAACA .................................... ACAACTCTACCTTCTGCGAAATTTGTCAAAAAGAAG 4645620 36 100.0 38 CAAAAAGAAG .................................... TCTGGTGGAGTTAGCTCCACTGGAACCAGCACAATGAT 4645694 36 97.2 GCACAATGAT ........T........................... TCTTCGGCCA ========== ====== ====== ====== ========== ==================================== 14 36 37 GTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [9,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.60,-9.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [51.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [437,520] Score: 0/0.18 # # Final direction: R [1.05,4.87 Confidence: MEDIUM] >NC_019729 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1286014 37 100.0 33 GGAACGGGCG ..................................... TCCAACCTTAAATTCCTGAGCTGATCGCTTTTC 1286084 37 100.0 33 ATCGCTTTTC ..................................... ACCATAAACCCCATAGGGGCAAGGGCCACACCA 1286154 37 100.0 36 GGCCACACCA ..................................... TCGCTCGGCTTGTTCTTGCAGCAATCGTGCGTACTG 1286227 37 100.0 37 GTGCGTACTG ..................................... TTTAAAATCTAATTGGACGGATAGGCTAATCAGAGTA 1286301 37 100.0 37 AATCAGAGTA ..................................... AGTTCATCTTTAGAACCGCGTACAGATCGGGATTTTC 1286375 37 100.0 34 CGGGATTTTC ..................................... CAGTCACGCTTGCTACCTTTTGAAGTTGTCCACA 1286446 37 100.0 37 GTTGTCCACA ..................................... AGTCATTCGATAATTCTTGAAGATTTACAAGCCAAGG 1286520 37 100.0 30 CAAGCCAAGG ..................................... TGGTATTGTATTGCGGTCTGTAGCCATCGA 1286587 37 100.0 35 TAGCCATCGA ..................................... GTTGAAACTCCTGATGATTTCACCAAACATATTGA 1286659 37 100.0 33 AACATATTGA ..................................... GTGGAGAAGCAGTTAAGTTGTTAATTAAATCAA 1286729 37 100.0 ATTAAATCAA ..................................... AGCCCGCAAA ========== ====== ====== ====== ========== ===================================== 11 37 34 GCCGCAATTAACCTAACTCCCTATCAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.05%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.20,-5.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [55.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [280,461] Score: 0/0.18 # # Final direction: F [4.77,0.37 Confidence: HIGH] >NC_019729 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 603426 36 100.0 35 GCGGCGAACT .................................... TACTTGAAAGTATTGTAACCATCACAAATGTTAGT 603497 36 100.0 34 AAATGTTAGT .................................... TCCACTATTTTCGTATTAATTCTAGCAGGATTAA 603567 36 100.0 36 GCAGGATTAA .................................... ATTAAAACTAGCTAGATGTCAGAGAGCCAGTTTTAG 603639 36 100.0 37 CCAGTTTTAG .................................... CTATGACAATTTTTGCTGTTTCTTTTGGGATGATAAG 603712 36 100.0 37 GGATGATAAG .................................... GCACCTTTGCCAGGTTAGCGGCAACTAACACAGTATC 603785 36 100.0 38 ACACAGTATC .................................... CGCCATGGGAGGCGAGAAGTTCTTCGAGTTGAGCTAAA 603859 36 100.0 34 TTGAGCTAAA .................................... CAGACCCCCACTCGTCGTAAAAATGCGATAAGTG 603929 36 100.0 36 GCGATAAGTG .................................... AAATAAAACTCCTCCAAAATCTGGAATTTTATAACC 604001 36 100.0 38 TTTTATAACC .................................... AATAAAGAAAAAGAAGTGGGAAAACAAAAAATCGAAGC 604075 36 100.0 35 AAATCGAAGC .................................... CAGAAGTATCGGTGTCAATAATATCGAAACATTGA 604146 36 100.0 43 GAAACATTGA .................................... ACCCGAGGGGGCACAGGCTGGGGTAAAAGCAATCGTGATCATT 604225 36 100.0 35 CGTGATCATT .................................... CAAAAAGGTAATGCTCGTATATTTCTACATTGCTA 604296 36 100.0 41 TACATTGCTA .................................... CTTCTAGAGGAGTTTCTCCTGGTTCAATTTTTTCGCTGATT 604373 36 100.0 37 TTCGCTGATT .................................... CGGAAAGTCCGACAATTCCTCGTTGCCGCACGCTTCC 604446 36 100.0 37 GCACGCTTCC .................................... CGATCAGATTTTAGAAAAGATTCTAAAGATTTTTGAG 604519 36 97.2 GATTTTTGAG ...........T........................ TCATTCAG ========== ====== ====== ====== ========== ==================================== 16 36 36 CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [11,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-1.90,-1.80] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [43.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [253,872] Score: 0.18/0.18 # # Final direction: F [0.78,0.45 Confidence: LOW] >NC_019729 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 4873443 37 100.0 33 GGCACGGGCG ..................................... GGAGCGTGACGCTGAGAACGAGAGCTAGCGTGA 4873513 37 100.0 35 GCTAGCGTGA ..................................... TGGAACAGCCTTGGGCGCTTATGGCTCCTTTCTTT 4873585 37 100.0 37 TCCTTTCTTT ..................................... CTAAAATCGCGCAACATCAAATTAACAGCAGCATCAA 4873659 37 100.0 37 GCAGCATCAA ..................................... AGAGCTAATGCGGCTGCTGCAAGTGAATAATTTTTAT 4873733 37 100.0 43 TAATTTTTAT ..................................... TTTGACCGGTTCGCTTTCGGATACCGCGAGCGCGGTTGGATTC 4873813 37 100.0 35 GGTTGGATTC ..................................... AAGGGGGCGCTAGGCATTTTACATTGCTCCTCTCA 4873885 37 100.0 33 GCTCCTCTCA ..................................... AACTCCCTTTCCTCGTCATCGTCGGGCGGTTCC 4873955 37 100.0 31 GGGCGGTTCC ..................................... GCCTTTCTCGTGTGATTGTACATTTGCGAGA 4874023 37 100.0 36 ATTTGCGAGA ..................................... GAGAAATCTTTAAAAGCAATTTACCGAGCAAATCAG 4874096 37 100.0 33 AGCAAATCAG ..................................... TCACGATGGCTGCCTTATTAGGCGGGACATTGT 4874166 37 100.0 36 GGGACATTGT ..................................... TCTTTGGTGTCCGGGGAATCTACGCCTCTCACCCTG 4874239 37 100.0 34 TCTCACCCTG ..................................... CGATTAGCTACGAACAATTGGACGATGTAGATGA 4874310 37 100.0 36 ATGTAGATGA ..................................... TTCACCTTTATTGTTCGCCTGGGATTCTGGTTGCTT 4874383 37 100.0 33 CTGGTTGCTT ..................................... TTTAAATATTAGTTGGTCATTCCGCAATTTATC 4874453 37 100.0 39 GCAATTTATC ..................................... TAAAACTCTCAGAGTAACCATGAACCCCATCGGGGCTAA 4874529 37 100.0 43 TCGGGGCTAA ..................................... TTTAAATATTAGTTGGTCATTCCGCAATTTATCAGACCAAATA 4874609 37 100.0 35 AGACCAAATA ..................................... TTACAAAAACGATCGCACATTTGACAAAAAGTTGT 4874681 37 100.0 37 AAAAAGTTGT ..................................... GTTCGGATTTATGGGAGCGAGAATAATCTCTCCCCTA 4874755 37 100.0 34 CTCTCCCCTA ..................................... TCTGATTAGCTTTGTCAAAGTACCTTGCACCCTT 4874826 37 100.0 33 TTGCACCCTT ..................................... TTACTTTGTCTCCTTGTGGCTTGACTCTCCTGT 4874896 37 100.0 34 ACTCTCCTGT ..................................... TAGTTTTCTGCCCCAGGAATCTTGACTCTCCTGT 4874967 37 100.0 33 ACTCTCCTGT ..................................... TTATGTACGATATATCAAAGAATCGTGATTGTT 4875037 37 100.0 32 CGTGATTGTT ..................................... ACAAATCGATTGATTGACGGATGATTTGGACT 4875106 37 100.0 42 GATTTGGACT ..................................... CCAATACTACAAGTAACTCCTTGAATACCACCGCCACCACAA 4875185 37 100.0 33 GCCACCACAA ..................................... GCTAATCGTCGGTGTACTAGTCGGTCTGCTAGT 4875255 37 100.0 35 GTCTGCTAGT ..................................... AAGCCAAGCTTTCCGGCTTCCAATCTTAAAGGAAC 4875327 37 100.0 36 TTAAAGGAAC ..................................... ATCAGCAGCCGGAACAAATAGCGACCGATCTTATTA 4875400 37 100.0 34 GATCTTATTA ..................................... AAGATGATTTTTAGAGAGTGAACAAATCCGATTA 4875471 37 100.0 36 AATCCGATTA ..................................... TCTATATCTCGGTTTCCGTTATTTTCAACAAGTCGA 4875544 37 100.0 38 AACAAGTCGA ..................................... AGAAGAACTTAAAAAGGAAACGCCGCCGGAACCTGTTA 4875619 37 100.0 40 GAACCTGTTA ..................................... TACCGATCGCCCGCAATTCGATTTACCCCACGGGAAGCAG 4875696 37 100.0 34 CGGGAAGCAG ..................................... TCCACAACTTCGATTTGTTCGTCAGCGGGCGATC 4875767 37 100.0 36 GCGGGCGATC ..................................... TTTCTTGAGTGCGTTGAGCTTATTGCCGTACTGTCT 4875840 37 100.0 35 CGTACTGTCT ..................................... GAAAATTGTTAACCTTCCAGCTTCTCTCAATCCAC 4875912 37 100.0 40 CTCAATCCAC ..................................... TTATCCTGTTTGGGGTTATTCCCCGCCCTTTCGGTTTTCA 4875989 37 100.0 34 TCGGTTTTCA ..................................... AGGTGGATTCTCAGTTCTATCGAAGGGATTAGGG 4876060 37 100.0 38 GGGATTAGGG ..................................... CACACATCGACAAATACAATTCAACTTCCTTGCTAATC 4876135 37 100.0 35 CTTGCTAATC ..................................... TTGTCCGTAGTTTTGCCAGAGTTGCAAATACGTTT 4876207 37 97.3 37 AAATACGTTT ....A................................ CAGTAATTGCTGATGAAGTCTCATCAGAACAGGCTTC 4876281 37 94.6 35 AACAGGCTTC ....A............T................... CTGTATATCAGTGATTCCCGTAGCATTCCTAAATC 4876353 37 91.9 TTCCTAAATC ....A...T........T................... TCCTTGCGAT ========== ====== ====== ====== ========== ===================================== 41 37 35 GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:51.35%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [51.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [412,206] Score: 0/0.18 # # Final direction: F [5.18,0.37 Confidence: HIGH] >NC_019729 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 4977856 37 100.0 39 NNNNNNNNNN CAAAA.......G...............A.......G GTAGTGGTTTACTATGCTTTCACCCTTCCAAAAGCTGTA 4977932 37 100.0 37 NNNNNNNNNN ..................................... ATTAAACCCCGCATACAGTGCCATAGCCTTTTTAAGA 4978006 37 100.0 38 NNNNNNNNNN ..................................... AAGCTGAGGGCCACAAAATGGGATCAATGCAAATATTA 4978081 37 100.0 34 NNNNNNNNNN ..................................... CTACCACGCCGACGCATGGAAGTTAGCTTATCCT 4978152 37 100.0 35 NNNNNNNNNN ..................................... AGTACCGCGTCAGTTGGGCGTGGCTTGAGTTTGAT 4978224 37 100.0 37 NNNNNNNNNN ..................................... GATATAGCGTTTACGATGGCTATTGGTACTTCCAGTC 4978298 37 100.0 39 NNNNNNNNNN ..................................... AAAAATCGGTATATTTCCCAACCGGGTAGCCCCGGTTTG 4978374 37 100.0 34 NNNNNNNNNN ..................................... CCAAAGCCATGTTGGCGCCGATCGCAACTGTGCG 4978445 37 100.0 34 NNNNNNNNNN ..................................... CTATGAGGCCCTAAAGCTGAAGGATTGGGCTCTA 4978516 37 100.0 38 NNNNNNNNNN ..................................... CGACCCCCCTTAAAAAGGGGGGTTTCGGCTGTTAGGGG 4978591 37 100.0 33 NNNNNNNNNN ..................................... CCAGCCGCTCAAGCTCTTGGCTGGCGGGTAATT 4978661 37 100.0 32 NNNNNNNNNN ..................................... TCTAGGGTGAAAAGCTTGAATTCTTCCGAGAG 4978730 37 100.0 33 NNNNNNNNNN ..................................... TATCACTCCGGGCCCCTCACACCGGAGATGGTG 4978800 37 100.0 39 NNNNNNNNNN ..................................... GGGGCGATACCAGCAAGCACCACCATTAATCAAGGTCAT 4978876 37 100.0 37 NNNNNNNNNN ..................................... TGAAAAGTCATTGGCGCGGGCGGAAGCGACGCTTCCT 4978950 37 100.0 44 NNNNNNNNNN ..................................... TATATTTTAGCCTGAAACTCGTTGAGAGAAATCAAACAATGTGA 4979031 37 100.0 33 NNNNNNNNNN ..................................... TCTGCTTGTCCATTTATAGCTTAAGTACCCGTT 4979101 37 100.0 33 NNNNNNNNNN ..................................... GCTTACAGAGTTTAAAGCTTGGGCTAGCGCAGG 4979171 37 100.0 33 NNNNNNNNNN ..................................... AAATGGTGGAAACCTGGGGGGATGAAAATCAAA 4979241 37 100.0 33 NNNNNNNNNN ..................................... AACAAAGCGACTGTTGCTGATGTTCCGAGTGAG 4979311 37 100.0 37 NNNNNNNNNN ..................................... TTGGATGCCTCAAAATCAAATCCTTCCCGTTGTTTGT 4979385 37 100.0 38 NNNNNNNNNN ..................................... TGAATATCGTGGTTATCAATGCTATAAGGTTTTTCCAA 4979460 37 100.0 33 NNNNNNNNNN ..................................... ATAATTTCCAAATTGGAGAAAAGTTTACTAGCA 4979530 37 100.0 40 NNNNNNNNNN ..................................... AAATTTTGTTCCACATCAGTCTTTGAGAATTGATTCCCGA 4979607 37 100.0 36 NNNNNNNNNN ..................................... ATGAAGATATTGAATATTACGATCGCCTTGTGATTG 4979680 37 100.0 33 NNNNNNNNNN ..................................... TATACTGGCAGCCTTCTGGCTGGAGTATTGGTG 4979750 37 100.0 38 NNNNNNNNNN ..................................... CCGCCACGACAAAGTATCGAATTTCAAATTTAATGGGC 4979825 37 100.0 36 NNNNNNNNNN ..................................... AAACCCACAGCCCCCACACCAGCCCGCGAGAGCACA 4979898 37 100.0 39 NNNNNNNNNN ..................................... TTGGACCACCGCCGAGGGGAACTGCAACAACTACGCCCA 4979974 37 100.0 36 NNNNNNNNNN ..................................... TAAACTGCTGGTGTCCGAATCTGCTCCTACCAACAA 4980047 37 100.0 40 NNNNNNNNNN ..................................... TCGGCCCAATCCTCCGGCTGTTTCAACAGCACCACAGCCC 4980124 37 100.0 33 NNNNNNNNNN ..................................... TAGGCTTCCGGGGTGTTCCACTAATTTGAGCGG 4980194 37 100.0 41 NNNNNNNNNN ..................................... AAGAAATAGAGGTTTTGGTAAACCTCAGCCGGAAACACTTA 4980272 37 100.0 36 NNNNNNNNNN ..................................... GCTGGTAATCTGATCTCAATGAATGAAATTAAAGAA 4980345 37 100.0 36 NNNNNNNNNN ..................................... TCAAAAATTACGCAGGCATAATCAGCAAGCTTGCAC 4980418 37 100.0 37 NNNNNNNNNN ..................................... TGAAGATAATTATTATATATATACTAAGGGGTCAAAC 4980492 37 100.0 34 NNNNNNNNNN ..................................... ACGAACGACAGATAGATCTCAATCAAGACGAAGC 4980563 37 100.0 35 NNNNNNNNNN ..................................... TTGCGATTAGTTAGTCAGCCCCACGAGAATTTAGG 4980635 37 100.0 43 NNNNNNNNNN ..................................... GTTACGCTGGCAATCCCTTCTACTGTCACCCACACGGCGGCGG 4980715 37 100.0 38 NNNNNNNNNN ..................................... CAGAGCGTAAATTGTGCAATTGCTCGGTAATTCCATAC 4980790 37 100.0 37 NNNNNNNNNN ..................................... CTGGCTCAGCTCAATTATGAGAGGAGCAATGTAATAT 4980864 37 100.0 35 NNNNNNNNNN ..................................... AATAATCATAAAGCCACCACTGAAGAAATTATGAA 4980936 37 100.0 36 NNNNNNNNNN ..................................... CGACGTTGGCAGACCAATTGGTCGCAAAATACAATT 4981009 37 100.0 34 NNNNNNNNNN ..................................... CCGCCGAATTCCGCCAGATTGAATGGCTTTGGAA 4981080 37 100.0 37 NNNNNNNNNN ..................................... TCGCCAAAGCAACGCCTGGGAGGTGGTAGAAGGGAAA 4981154 37 100.0 33 NNNNNNNNNN ..................................... TTGTACGCGGGGCGCTTGGTGTTATTTTTTTGG 4981224 37 100.0 41 NNNNNNNNNN ..................................... TGGATCGCATCCCTCGACCTCTGGCAACAAATCAAAATAGC 4981302 37 100.0 37 NNNNNNNNNN ..................................... CCACAGCCTTAAGCCCTTCGGGAGTGTGCCGCGACCA 4981376 37 100.0 45 NNNNNNNNNN ..................................... TTATCAGCGACCTTACCCAAAGCCGGCAAAAGGGGAAGAATTCGG 4981458 37 100.0 37 NNNNNNNNNN ..................................... CGGAAAGAGTTTATGCGCCCTCAAAGCGATACTTGCG 4981532 37 100.0 34 NNNNNNNNNN ..................................... TAGAGGCGTACAAGTCGAAGTATTTAAATCACTC 4981603 37 100.0 46 NNNNNNNNNN ..................................... AAATGATTCGAGCCTCGATACCCTCAGCCCTGGAGTCTCTTGATTT 4981686 37 100.0 35 NNNNNNNNNN ..................................... CCCCTCAATTCACTCAAGCTCGCACCAAATACAAG 4981758 37 100.0 33 NNNNNNNNNN ..................................... CTGTCATCCTTGATGAGTCGGTGTCTGTGATTA 4981828 37 100.0 39 NNNNNNNNNN ..................................... AGCATTAAGTGATCCTCGTCAAACTGATATATTAGCTAT 4981904 37 100.0 34 NNNNNNNNNN ..................................... GGTGGTTGTCGTAGTGGAAAGCAGGATCTCGATC 4981975 37 100.0 42 NNNNNNNNNN ..................................... TCTACCATCTAACTATCAACAACGACATAACCCATCCGTCAA 4982054 37 100.0 34 NNNNNNNNNN ..................................... TTGGGTACGATAAGCCCCAGCCCGGATTACTCTA 4982125 37 100.0 40 NNNNNNNNNN ..................................... TCGAGTTGGTTTGTGGGAGACTACCCGATTTACTGTATCA 4982202 37 100.0 40 NNNNNNNNNN ..................................... CCTGCGACAGCGGTTGGTGTTTTAGATGTGACAGCACCTA 4982279 37 100.0 40 NNNNNNNNNN ..................................... CTTACACAATGTTAAGCTTTTACTCCCCACCATCTGTGCA 4982356 37 100.0 50 NNNNNNNNNN ..................................... GTGTCGCCGACCTCCAGCAGTCGCAGGCAGCTTACCAAAAACAGCAGTTA 4982443 37 100.0 41 NNNNNNNNNN ..................................... CGTACTGTTTTGCCAGCTCTGGGTCTACCCAAAACGCCATA 4982521 37 100.0 39 NNNNNNNNNN ..................................... TGAGTAGAGTCCCGCCAGACTTGCGTGTATTCGATTGAA 4982597 37 100.0 43 NNNNNNNNNN ..................................... CTAGCTCATTCCACTTTGGATTGTTGGAGTCCCAAAAATACTT 4982677 37 100.0 38 NNNNNNNNNN ..................................... TGGCTATGGTTGAGGAGTTTATGGGGTCAGAACGTTTT 4982752 37 100.0 39 NNNNNNNNNN ..................................... GGAAAATTGAATAACGGCTTGAGCGCTTTCGAGAAGATG 4982828 37 100.0 36 NNNNNNNNNN ..................................... TGAAATTATGAGTTGGGAAGGGCTTTAATCCCTTCA 4982901 37 100.0 43 NNNNNNNNNN ..................................... TTATTTGTGCGTGTCAAGCGTTTTTATGCGTGTAATTTAGTTT 4982981 37 100.0 39 NNNNNNNNNN ..................................... CTAAAATCAGGCAAGTACGCATTTCTTGCGTGTGGAAAT 4983057 37 100.0 33 NNNNNNNNNN ..................................... CTATCCAGTCGGACGATGACGCAATTCTATGAA 4983127 37 100.0 38 NNNNNNNNNN ..................................... CCGCCACTTCCTAATTTTCTTCGTTATCATGGTGTTTC 4983202 37 100.0 42 NNNNNNNNNN ..................................... CTTATGAACAGCTTGATTTAATTTGTGTTGCAGATGTTTCTG 4983281 37 100.0 35 NNNNNNNNNN ..................................... GTTCCCCCTACTTGTTCTACCTTAGCTTTCATTAA 4983353 37 100.0 37 NNNNNNNNNN ..................................... GCGCAAAATTAACTACCATGAAGTATTGGGACCGATT 4983427 37 100.0 39 NNNNNNNNNN ..................................... TTTATGGCTCGGAATTTGAGCTTGCCAGTCAGGAAGAAC 4983503 37 100.0 43 NNNNNNNNNN ..................................... TAAGAAGCAAATAGAGCATATAGACAAACAAATAGAAACTTTA 4983583 37 100.0 38 NNNNNNNNNN ..................................... AAAAAACGCAGTCCAATGTTAGACATGAGCAAAATTAA 4983658 37 100.0 33 NNNNNNNNNN ..................................... AAATGCTTTTCTCCTACAAAAACTACAAATTTA 4983728 37 100.0 36 NNNNNNNNNN ..................................... TCGGGAGTTCTGGTTTTATTGTAGAGGCGCAATTAA 4983801 37 100.0 37 NNNNNNNNNN ..................................... CTACTTATAGTCATCATCCCAGAACCCTTACCCCATA 4983875 37 100.0 38 NNNNNNNNNN ..................................... AGTCACATAAGGAAAGGGAACGAGCCACTAAAGCTTAA 4983950 37 100.0 36 NNNNNNNNNN ..................................... ATTGTCTAGAGTGTATCTACTAACTTATGATGCCTT 4984023 37 100.0 36 NNNNNNNNNN ..................................... TCTAGAATGCTCAACACCGATTTTTAGTAGTCATAA 4984096 37 100.0 42 NNNNNNNNNN ..................................... GTGACTATGCTACATCCAGCTTTTTTCCAAATGCCTTTGTTT 4984175 37 100.0 42 NNNNNNNNNN ..................................... ACGTTGCAAGAACAACACGCTGAACAAGTTGTAATACCTCAA 4984254 37 100.0 41 NNNNNNNNNN ..................................... TTGATCGACATGATGCAGCTAACCTACTCGATAAAATGGTG 4984332 37 100.0 43 NNNNNNNNNN ..................................... ATAATACTAGGTGAAAAAGCAGCTAGAATCAAATCGGGTACAA 4984412 37 100.0 32 NNNNNNNNNN ..................................... TAGAGACATTACTTTAGTAGTATATCAGATGA 4984481 37 100.0 38 NNNNNNNNNN ..................................... TAGCCTCTACTACTTGTCCAGACAATAATACCCCTCCA 4984556 37 100.0 35 NNNNNNNNNN ..................................... TATCGTCCGCGCGGTCAGCGACCGCACATCGGCAA 4984628 37 100.0 35 NNNNNNNNNN ..................................... GCAAGATTTCGTCTGAGCCGATAGCGCAGCCCAGA 4984700 37 100.0 36 NNNNNNNNNN ..................................... AACCCGTTCAGCCCAAATTAACAGATTGTAATTAAA 4984773 37 100.0 34 NNNNNNNNNN ..................................... TTGACAGCACTGATTGGTTCTATCGACCATTGAG 4984844 37 100.0 34 NNNNNNNNNN ..................................... TAATAGTCTTGGGAATTTTGGGATATTTTTCTCT 4984915 37 100.0 1 NNNNNNNNNN ..................................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 96 37 37 GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:59.46%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.00,-4.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1151,363] Score: 0.18/0.18 # # Final direction: R [0.18,5.28 Confidence: HIGH] >NC_019729 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 604591 36 100.0 50 TGCTTTCCAA .................................... TTTATTCGGGATTCGTACATCGGCTCCGAATTTAATTCTTCCAGGGTAGG 604677 36 100.0 41 CCAGGGTAGG .................................... AGGAACTGCACGGGCCCTCCACCGGCACCGCACCCAAAACA 604754 36 100.0 35 ACCCAAAACA .................................... AGGAGACACTGGAGTTCTGTCATATTTTCACCCCG 604825 36 100.0 TTTCACCCCG .................................... GCTAAAACAA ========== ====== ====== ====== ========== ==================================== 4 36 42 CTCCCCACTCGTTGGGGAAACTAATTGAATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.20,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1418,566] Score: 0.18/0.18 # # Final direction: F [0.55,0 Confidence: HIGH] >NC_019729 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 648662 36 100.0 39 CAGGTTTTAA .................................... ACATTGGCAACAATTCTGTACCGAGATTACAGCTTGCCA 648737 36 97.2 35 CAGCTTGCCA ..........................T......... GCCTTTTCAAATTCGTATTCTTTGTAACCTACAAA 648808 36 97.2 37 AACCTACAAA ....T............................... AATTAACGCAGTACGTGCAGAAAAAGAATCCCAATGG 648881 36 100.0 37 ATCCCAATGG .................................... TGCCTTTGAACTAAGCAAAATGTGTAGCATGTCTTTT 648954 36 100.0 41 CATGTCTTTT .................................... CATATTTACCAACCAAACGAATACAAGCTCCCTGATTGGGC 649031 36 100.0 39 CTGATTGGGC .................................... TAAACTCTATAGCATCATTCCCAATTGATGCTACATCTC 649106 36 100.0 37 GCTACATCTC .................................... ACACAAATGCAGAATGACAACGTTCGTTTTGCAAGGA 649179 36 100.0 39 TTTGCAAGGA .................................... AAAAGATGGATCAAATCTTTGTCGATCATCAATTACCAG 649254 36 100.0 38 CAATTACCAG .................................... TGTTAGCGTCTGCTAAAGACATTAAAGATTTTGTTTTA 649328 36 100.0 41 TTTTGTTTTA .................................... AGGATTGTTTGGCCAAGTCAAAACAATTCCTTGGAGAAGAA 649405 36 100.0 39 TGGAGAAGAA .................................... TTCGGATCACTAGTCACAGTACCGGTCTCAGCGTTTTTT 649480 36 100.0 37 AGCGTTTTTT .................................... TCGATGGAGTTGCTACAGCTATTGTTTTTAAGATAAC 649553 36 100.0 38 TTAAGATAAC .................................... ATCCGGGTCGTTTGATGATAGCTCTACACAACACTCTG 649627 36 100.0 44 CAACACTCTG .................................... TTGAAAAATATCAAAACAGATTGAGCAAAGTTACAACAAACCAA 649707 36 100.0 38 AACAAACCAA .................................... TGGAGGTTTTATCTCTATCCCTTGGGCTATCTTTTTAA 649781 36 100.0 39 ATCTTTTTAA .................................... ATAAATCATTTATTTGGTTTGGTCTTAGTTTCATATTAT 649856 36 100.0 38 TTCATATTAT .................................... TCAAGCCTTGAACCTATAAACTTTTTTAATCGGCCAAA 649930 36 100.0 37 ATCGGCCAAA .................................... TTTATTAAAAAACTGTTCTGGCTACATCTGTATTTTT 650003 36 100.0 43 CTGTATTTTT .................................... CCAAAAAAGCTACTGCTGTTTTCCCAAAAACACACGATCCAAA 650082 36 100.0 39 ACGATCCAAA .................................... GACGTTTGAAGTGGATTGTATACTAGAAGTAACTCAAAA 650157 36 100.0 42 TAACTCAAAA .................................... AATCATTTTTCCAAGGCAAACTTGAAGAGTTTCATGATTTAC 650235 36 100.0 36 CATGATTTAC .................................... AATGGTGATGAAACGAGCACTGTCTCCCCTAAAAAA 650307 36 100.0 CCCTAAAAAA .................................... CACCAAGTTT ========== ====== ====== ====== ========== ==================================== 23 36 38 GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [9,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.60,-9.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [111,11] Score: 0.18/0.18 # # Final direction: R [0.18,5.28 Confidence: HIGH] >NC_019729 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 6125700 37 100.0 35 NNNNNNNNNN T..CA.GC..TA...G...AAA............... GCACTGGGATATCGCAGCTTTGAAACCTACTGTCA 6125772 37 100.0 34 NNNNNNNNNN ..................................... TGTCAGGAATCGATCAGAGTGTTGGAAGTATTGA 6125843 37 100.0 34 NNNNNNNNNN ..................................... TGAGTGCTCTTGCCAAAGATGTCTAAGGTTCCTT 6125914 37 100.0 36 NNNNNNNNNN ..................................... TCAAGCTGGTTAGTCTGGCGCAGTTTTTCCCGTGCC 6125987 37 100.0 33 NNNNNNNNNN ..................................... TATTAATCCTTTTAGCAGATATCTGGGCGCCTA 6126057 37 100.0 34 NNNNNNNNNN ..................................... AGTCGTCGGGGTCTGGCGGTTCGTCGGTCGATTC 6126128 37 100.0 40 NNNNNNNNNN ..................................... ATTCTGATGCGCTTTCCCAGATGGGAGGATTGCTCCGTTT 6126205 37 100.0 39 NNNNNNNNNN ..................................... ATGATTGTCGATCGCAATTTGATGTTTCTGATGATTCTT 6126281 37 100.0 33 NNNNNNNNNN ..................................... TTAATGATAGGTGACTGCACGCGATTTAAATGA 6126351 37 100.0 33 NNNNNNNNNN ..................................... TTCAGCGTCAAGCGCCTTCGCCTGGTACGAATT 6126421 37 100.0 34 NNNNNNNNNN ..................................... AATCGTTCCTTGGGACTTCCCCGCCCCGATGGGG 6126492 37 100.0 37 NNNNNNNNNN ..................................... GGCACTTACTCTTACTACTGGCGCAAGCATCTCAAAA 6126566 37 100.0 36 NNNNNNNNNN ..................................... ATACAGAAGGCTAAAGGGCGATGGCTGGTAGTGTTT 6126639 37 100.0 36 NNNNNNNNNN ..................................... CTCAAAAGATAACTTGCAGCGGACTTTAAATCCTTA 6126712 37 100.0 39 NNNNNNNNNN ..................................... GAATATATGCACCGCTTCCCCCCTAGGCAGAAAGGGTTA 6126788 37 100.0 33 NNNNNNNNNN ..................................... TTTTTCATAAGAATGGGAGGAAGCGATCGCCCT 6126858 37 100.0 38 NNNNNNNNNN ..................................... TGATTGATTCGCGCTTCCTGGGCGCGAGACTTTGCAAC 6126933 37 100.0 37 NNNNNNNNNN ..................................... GAGATTGCGATTGTCCGTAGCGTCGCATCGCGGCCCG 6127007 37 100.0 35 NNNNNNNNNN ..................................... TCTTCCTCTGCTTGCACCAATGCCTTGAGAGCTTC 6127079 37 100.0 34 NNNNNNNNNN ..................................... TCAGGTTCACAGTGCAGTTCACGCGATTTGTTCT 6127150 37 100.0 37 NNNNNNNNNN ..................................... GTTGCTTATCAACCCATTCAACAACAGCCAAAGGTTC 6127224 37 100.0 37 NNNNNNNNNN ..................................... ACAGCGAAGGCAGCCGAGGCCCACGAACCAGAGCCCG 6127298 37 100.0 33 NNNNNNNNNN ..................................... TAATTTTCTTGCTAACGAACCGACCACCGATGC 6127368 37 100.0 34 NNNNNNNNNN ..................................... CTAATTGTCCAAAAGTTGGATTAAGAACTGCCGC 6127439 37 100.0 38 NNNNNNNNNN ..................................... TTTTCGCTAAAGAAGCCTCGAAAGGCGACACGGGCGGT 6127514 37 100.0 36 NNNNNNNNNN ..................................... TGATGCGCGTGTAGGATGCGCGCCCCCCGTTGGATT 6127587 37 100.0 39 NNNNNNNNNN ..................................... GTATCTAAACCAGGTGACAAGCAAGGAGCAAATTCTTTG 6127663 37 100.0 34 NNNNNNNNNN ..................................... AAAAACGAGGTGACTAAAGGGTTTAAAAAATCTA 6127734 37 100.0 36 NNNNNNNNNN ..................................... GCACTTATCTTGGCTGCGCGTAATAATTATAAAAGT 6127807 37 100.0 37 NNNNNNNNNN ..................................... GATACTTTACGGATTTTGAAAAGCGCTGCTCGATCGC 6127881 37 100.0 33 NNNNNNNNNN ..................................... ACCTAATTTAACGGCTTTTGTTCGGTAATTCCG 6127951 37 100.0 34 NNNNNNNNNN ..................................... GCGAATGAGTGAGATTTAGTCAAGAAGTGAACCC 6128022 37 100.0 44 NNNNNNNNNN ..................................... TTTCCTGGAGCTTGTCTGTCGGTCGCTCACCTCTTGCTCCTTCG 6128103 37 100.0 35 NNNNNNNNNN ..................................... AAATAATCCCGAAACAGCATCACATTGAAAATCGA 6128175 37 100.0 34 NNNNNNNNNN ..................................... GCTAGGAGCGATCGCACTTCTTGCACTTTTGCCC 6128246 37 100.0 33 NNNNNNNNNN ..................................... TGTTGGGCCAGATTTTCTGGCTCCGAAGTTAAT 6128316 37 100.0 38 NNNNNNNNNN ..................................... GCAAGGCAAAATACTGGATCTGTCGGCTCAAAAACTGG 6128391 37 100.0 35 NNNNNNNNNN ..................................... GGGATGCCCTAAATTTTACGGGCAGTTAAGAGGAC 6128463 37 100.0 34 NNNNNNNNNN ..................................... TATTTACCTCAAATTTCTTGACAGTGGCAGGACT 6128534 37 100.0 42 NNNNNNNNNN ..................................... TCTCGAAAGCTTGGAAGATTGGTTGGAGCGAAACCCTGGTTT 6128613 37 100.0 41 NNNNNNNNNN ..................................... TTCGGCCAGGCGCATTCTTAAGCGCGGCAGCTACTGGGTAT 6128691 37 100.0 41 NNNNNNNNNN ..................................... GGGGCGGGAGATGGCTCCCGCTGGAGTGCAGCCTTTTGTGC 6128769 37 100.0 38 NNNNNNNNNN ..................................... GCGTACTGGGGAAGGTGACCGGGCAATTCTTACCGATT 6128844 37 100.0 35 NNNNNNNNNN ..................................... TGTGCGGTATCCGCACCACAAAGTCCGCCCGATCG 6128916 37 100.0 34 NNNNNNNNNN ..................................... TTGGGTACGATAAGCCCCAGCCCGGATTACTCTA 6128987 37 100.0 44 NNNNNNNNNN ..................................... GCACCGACCGAGCCGATCGCACCGACCGACGTAGCCGCAATCAA 6129068 37 100.0 37 NNNNNNNNNN ..................................... TTAGTCAAATGTAACCTTAATTGATAGGAATAGAAGA 6129142 37 100.0 33 NNNNNNNNNN ..................................... GGGGCCCGATTAGTTTCAGTGGCTCCCTAATCC 6129212 37 100.0 35 NNNNNNNNNN ..................................... ATTGAAAACTTTTAAATTACCTCTGTCCTCATCAA 6129284 37 100.0 37 NNNNNNNNNN ..................................... TTGAAAAAATTCTAGATGGGGCATTTTTCATATCTAG 6129358 37 100.0 39 NNNNNNNNNN ..................................... TTTGTATTTTTGGGTTAACTCATCTAAGGTTAGAATATG 6129434 37 100.0 36 NNNNNNNNNN ..................................... GCAGAGAAACCGTGTGGATGTCTGGCACAGCCGTCG 6129507 37 100.0 37 NNNNNNNNNN ..................................... TTTGCTGTTCAGTTAATTTAATATTTGTTTCAATAAA 6129581 37 100.0 36 NNNNNNNNNN ..................................... GGCAGCTTGCATAGCCCAATCCATCGAAAACTCAAT 6129654 37 100.0 34 NNNNNNNNNN ..................................... TTTTCTCCTGTGTTTAAATTACACACACCAAAAA 6129725 37 100.0 36 NNNNNNNNNN ..................................... TCAAAAGTTGCGTGCTCATAGATATCTCCGGGCGAG 6129798 37 100.0 34 NNNNNNNNNN ..................................... AAGTGAGAAAAGTCTGAGCATCAAAGGCACTAAT 6129869 37 100.0 37 NNNNNNNNNN ..................................... TCTATCAATCATTTTAAAACAAGCAAATAATGTTTAA 6129943 37 100.0 38 NNNNNNNNNN ..................................... ATTTTATAGCCGCAACAATTGCTTGGGGGTGGCGAGTA 6130018 37 100.0 34 NNNNNNNNNN ..................................... GGATTTGACTCAGCACAAGGTGAATATATTGGGC 6130089 37 100.0 38 NNNNNNNNNN ..................................... GCACATCGTAGGCGATGTCGATAAAATAACAGCATTGC 6130164 37 100.0 35 NNNNNNNNNN ..................................... GTCAAAGCAGCCACTCCTTCACTGGCTACTGCTGT 6130236 37 100.0 37 NNNNNNNNNN ..................................... TAAGTCAGGCATCCGTATTTCGGAATCTCGATCGAAT 6130310 37 100.0 36 NNNNNNNNNN ..................................... AGGAGCAATGGAACTGTTTACAGTGTTTACAACAGG 6130383 37 100.0 34 NNNNNNNNNN ..................................... AAGCGCAAAAACTGTACCTCAAAGTATCTAGCGT 6130454 37 100.0 34 NNNNNNNNNN ..................................... ATAAAACTAGAGAGTTTCGATCGCACTCGATCGA 6130525 37 100.0 40 NNNNNNNNNN ..................................... GTTTTTAGCGCTTGCTGTTTTTTGTTGTCTTCTATATCAT 6130602 37 100.0 33 NNNNNNNNNN ..................................... ATGAAGGTCATAGTTTCCACGAAATTGAAGAGA 6130672 37 100.0 36 NNNNNNNNNN ..................................... TGAGCAAACCACTGCCGAGGTTCGCCGCCTGAAGTG 6130745 37 100.0 37 NNNNNNNNNN ..................................... TGTGGTGTGTGTTTGGGTTAAATCCTAAGCGTCGGTT 6130819 37 100.0 1 NNNNNNNNNN ..................................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 71 37 36 GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.00,-4.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [10,1091] Score: 0.18/0.18 # # Final direction: R [0,5.46 Confidence: HIGH] >NC_019729 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 6578156 37 100.0 33 CCGATCGCAT ..................................... GCAATTCTGGTAAACCTACCAAGCGGCATTTGT 6578226 37 100.0 34 CGGCATTTGT ..................................... TTGAACTCAATCGCGCCGCTGGGTTCTGACTCAA 6578297 37 100.0 36 TCTGACTCAA ..................................... ACGCGAGCGCCACATTCGTAACGGTTGTCGTCGAGC 6578370 37 100.0 41 GTCGTCGAGC ..................................... TGGAAAAGTATTTTTAGATTAAGATGTACGGTGCTCTGAAA 6578448 37 100.0 36 TGCTCTGAAA ..................................... TGAGCAAATAAATCACTTCTCAAACACAGAATTTTA 6578521 37 100.0 34 CAGAATTTTA ..................................... TATCCCTGACGGTAACAGTTGGTCTGTAACAGTT 6578592 37 100.0 33 TGTAACAGTT ..................................... ATCTGCAATTCCAATTCACTTTACCTAATAGGA 6578662 37 100.0 33 CCTAATAGGA ..................................... TTTCCAGCCTCGGATAACTGATTCTAGTAACTC 6578732 37 100.0 37 CTAGTAACTC ..................................... TACCTTCACTTTGTACCAATCTTTTGATTTCCAAAGC 6578806 37 100.0 34 TTTCCAAAGC ..................................... TTGCCAAGCATTGATAGCAAAATCGTCCTTGAGG 6578877 37 100.0 34 GTCCTTGAGG ..................................... TTCATAGATGTGGAATTTGACGTTTTCCATGAGC 6578948 37 100.0 42 TTCCATGAGC ..................................... TTCCGCTCTTCGCAAGTTGGTAGATGATGTCGCCACACCAGA 6579027 37 100.0 35 CCACACCAGA ..................................... TTTTCCTTATTGATGTTAACACGCTTACAGCTAAA 6579099 37 100.0 38 TACAGCTAAA ..................................... CTTATGATGGAACGGTTAGGCGGATCAAATTCACTGGC 6579174 37 100.0 ATTCACTGGC ..................................... TTCGCAGCTA ========== ====== ====== ====== ========== ===================================== 15 37 35 GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:59.46%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.30,-4.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [691,356] Score: 0/0.18 # # Final direction: F [4.87,0 Confidence: HIGH] >NC_019729 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 6577718 37 100.0 35 GGAACGGGCG ..................................... TCAACAGCAGCACCGCAGCCCAACAGCTCCAATCC 6577790 37 100.0 32 GCTCCAATCC ..................................... TCTGCAACGTATTTTTCTGCTAATCGAAAACC 6577859 37 100.0 33 ATCGAAAACC ..................................... CGCTCCTTCAATTCCAGATGTAAAATTATCGGG 6577929 37 100.0 33 AATTATCGGG ..................................... CAATATCATTTTTAGAAATATTGGAAATATTTT 6577999 37 100.0 GAAATATTTT ..................................... GCAATTCAGCA ========== ====== ====== ====== ========== ===================================== 5 37 33 GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:59.46%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.30,-4.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [253,1531] Score: 0.18/0.18 # # Final direction: F [4.87,0.18 Confidence: HIGH] >NC_019738 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3859458 37 100.0 34 NNNNNNNNNN ..................................... AAAGGAAAGCATCATGATTACCAAGCAGAAAAGA 3859529 37 100.0 33 NNNNNNNNNN ..................................... GGGAAGGCGTTCGTTCATCTTGAATTTCAAACG 3859599 37 100.0 31 NNNNNNNNNN ..................................... TTCATGTGAGAGCGGATAAACGCCTCGATTT 3859667 37 100.0 34 NNNNNNNNNN ..................................... GACTTGCAGTCTACAAGCCATCTACCTCGATTGA 3859738 37 100.0 37 NNNNNNNNNN ..................................... ACCAGTTGATGAGCCGTCTTGTAGTGGAAGTCCTTGC 3859812 37 100.0 36 NNNNNNNNNN ..........................C.......... GAGGAGCGGGAGAAAGGGGCACGAATCATTTTCACG 3859885 37 100.0 35 NNNNNNNNNN ..................................... GTTCCTCGTTCGGAAAGGCTCTTTGGCCCAAGCCA 3859957 37 100.0 35 NNNNNNNNNN ..................................... ACACCACTAAAGCCGTTTGCCTAATTGGCGCTCAA 3860029 37 100.0 37 NNNNNNNNNN ..................................... CCCAAGACTCGTATTCAGAGGCTTGATCGATCGCCGC 3860103 37 100.0 33 NNNNNNNNNN ..................................... AGCAAATGGCAAGATGAAATCTTAATCGCTGTC 3860173 37 100.0 35 NNNNNNNNNN ..................................... CGATCGCCCTTGGACTTGATAGAGGTGAAGTTCTT 3860245 37 100.0 34 NNNNNNNNNN ..................................... TAACGTTTCCCGTGACATTAAGAACCAAGTGTCT 3860316 37 100.0 35 NNNNNNNNNN ..................................... TTTTAAGGCTATTCGTGGCGAAAAATGACCGGGCT 3860388 37 100.0 33 NNNNNNNNNN ..................................... CCCATTCTCTCACCGGTGAAACGCAGGATATCA 3860458 37 100.0 34 NNNNNNNNNN ..................................... ACAATCCTGGAGGAATTTCTCTAGTTTGGCTCTG 3860529 37 100.0 1 NNNNNNNNNN ..................................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 16 37 34 GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.30,-7.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [221,252] Score: 0/0.18 # # Final direction: R [0.27,4.5 Confidence: HIGH] >NC_019738 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2916270 37 100.0 36 GATGCCTGCG ..................................... GTGCAGGTGTTCAAGGGTGGAAATACCTTTGAGATT 2916343 37 100.0 34 CTTTGAGATT ..................................... GCTTCAGTAGAAACCGACTGGACAAAATACATGG 2916414 37 100.0 35 AAATACATGG ..................................... TTCAAACCATTGAAGACTTGGTAAAAAAGGTTATC 2916486 37 100.0 34 AAAGGTTATC ..................................... TGCCAGTTGATGCCGGTGGCTCGTGCCACCTCAT 2916557 37 100.0 39 GCCACCTCAT ..................................... TAAACACTTTAAATCAGTTGGGGGGAGAACCAGCCGGGG 2916633 37 100.0 35 CCAGCCGGGG ..................................... GGCTGCTCGGACCAGATATCGGCGACATACTACAA 2916705 37 100.0 33 CATACTACAA ..................................... AAAAAACAAGCAAAACACAAAGGAATTGCAAAA 2916775 37 100.0 39 AATTGCAAAA ..................................... GAAAAAAGCCGGTGAGCGGCAGTAGACCCCGAGACATGG 2916851 37 100.0 35 CGAGACATGG ..................................... ATACTTTTCCGACACCTCCATCACTTCTGTAGGTG 2916923 37 100.0 35 TCTGTAGGTG ..................................... GCAAGGACAATGTCGATTACTTCGTCGGGCTTTAA 2916995 37 100.0 37 CGGGCTTTAA ..................................... TGCTGCACCCATTGGACAAGGGTTGTCAGGCTCCAAG 2917069 37 100.0 31 AGGCTCCAAG ..................................... ATTGCCTAGGGCAACCAAGTTATTCGGCTAA 2917137 37 100.0 ATTCGGCTAA ..................................... GCTTTTATTG ========== ====== ====== ====== ========== ===================================== 13 37 35 GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.30,-7.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [51.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [514,1321] Score: 0.18/0.18 # # Final direction: F [4.77,0.18 Confidence: HIGH] >NC_019738 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================================= ====== 2087079 39 97.4 32 GGAGGTCAGC ......................................A ATGAGGCATTGAAGTCTGAGAACGCCGATTTT 2087150 39 100.0 33 CGCCGATTTT ....................................... CCAGATTCCACAACCACATCGCTAGTGTTCGGA 2087222 39 100.0 35 AGTGTTCGGA ....................................... CAGGGGTGGCTTACCTGGAAGCGCTGAAGCAAAAG 2087296 39 94.9 GAAGCAAAAG T.............C........................ TAACATTGCAA ========== ====== ====== ====== ========== ======================================= 4 39 33 AGTCTGAATTCCATATAATCCCTATCAGGGATTGAAACG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.54%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.50,-7.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [579,217] Score: 0.18/0.18 # # Final direction: F [5.46,0.27 Confidence: HIGH] >NC_019738 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3131505 37 100.0 35 GATGCCTGCG ..................................... TTGCTCTATAAGCAGGTGCCTCGCGCCGATGTTGA 3131577 37 100.0 39 CCGATGTTGA ..................................... TTTACTGGTTTAAGTAGTTCATCAGAGGCAAATTGTTAG 3131653 37 100.0 39 AAATTGTTAG ..................................... TAAAGACTGTAAGGGATATTGAGTAATTATACTCAGCTA 3131729 37 100.0 34 TACTCAGCTA ..................................... ATAATGTTATCTCTGACTTATCAAGCTTGTATTT 3131800 37 100.0 36 GCTTGTATTT ..................................... ACATTGAATAGGAAGAGAAAAACAAAGACGGATTCA 3131873 37 100.0 36 GACGGATTCA ..................................... TTTTAAGTACGTAAGGTGCATTCATTTTTACTTCAC 3131946 37 100.0 TTTACTTCAC ..................................... AAGCTTACACCTAAACAACAAACTAATCTCTTCG ========== ====== ====== ====== ========== ===================================== 7 37 36 GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.30,-7.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [267,228] Score: 0/0.18 # # Final direction: F [4.5,0.27 Confidence: HIGH] >NC_019738 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 4580267 36 91.7 36 TTTCGCCGTA -....T..........G................... CCAAAGCGCGATTGGTGACCCATACCACAATAATGA 4580339 36 94.4 39 ACAATAATGA ............C.T..................... CAAAGAACAAGCTGACCAAATCCGTGCAGATCAAGCTGC 4580414 36 100.0 39 ATCAAGCTGC .................................... GAGCAACTCAATAAACGCGATTTGTTGGTAATTGATGCA 4580489 36 100.0 AATTGATGCA .................................... AAAAGAGATAGATTT ========== ====== ====== ====== ========== ==================================== 4 36 38 GTTTCCATTCAATTAGTTTTCCCAGCGAGTGGGAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.80,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [165,1128] Score: 0.18/0.18 # # Final direction: R [0.37,0.59 Confidence: LOW] >NC_019740 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 11240 35 100.0 36 GAATGGTAGG ................................... TGTATGCTTCAAGCGGTGTTTTACCGCTCTGGATTA 11311 35 100.0 40 CTCTGGATTA ................................... GCAACGTTCATAATAAGAACACTGCTACTTCCGTCATCCG 11386 35 100.0 38 CCGTCATCCG ................................... ATTTGGCTGGGCATAGGTATATGTGCCTGATCCGATTA 11459 35 100.0 37 GATCCGATTA ................................... CCTAGGGTTCTTTTCCTTTCTTTCTCACAATCATTGA 11531 35 100.0 44 CAATCATTGA ................................... GTGGTGGTATTTCGGGGGATGTACCGGGGTTGGGCTGACTGGGG 11610 35 100.0 41 CTGACTGGGG ................................... ATTGTAAAACCATAACTTTGGAAACTTTCTCCCTCGATAAA 11686 35 100.0 34 CCTCGATAAA ................................... CGGTTTGGGTTCGGACGGGGTTTTCTCCGCTAAC 11755 35 100.0 CTCCGCTAAC ................................... CCTTCTGTGA ========== ====== ====== ====== ========== =================================== 8 35 38 GTTTCAAATCTCTTCCCCTTTACGGGGACGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:51.43%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.10,-9.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [50.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [448,200] Score: 0.18/0.18 # # Final direction: F [0.45,0.37 Confidence: LOW] >NC_019740 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 15495 35 100.0 38 ATATGGGAGG ................................... TTTCCTAGCTCTCTCGGTTGCGTCTGTTGGAGTTAAGT 15568 35 100.0 37 GGAGTTAAGT ................................... ATTTCTGGGCTATTGGTACCGGGTGTGGGCATCGCCG 15640 35 100.0 39 GGCATCGCCG ................................... TTCTGACCCTAGACGCAGCTTCTTCTGGACTTAAATAGT 15714 35 100.0 35 CTTAAATAGT ................................... TCGGATGGAATTAGAGCTTTCATACACAGTTCCGT 15784 35 100.0 37 ACAGTTCCGT ................................... ATAGCGGCAATGGCAACAACGATGGCGATGAAATTTT 15856 35 100.0 38 ATGAAATTTT ................................... CCAATTTGGTAACCACTAACTAGTTCATTTTCCACTAA 15929 35 100.0 37 TTTCCACTAA ................................... TCATACACAGTTCCGTCAACCGTGGCCAAACGCGAGC 16001 35 100.0 40 AAACGCGAGC ................................... ATTTTACGCTTTTCAAGGCATTCTTCGTGTAGAAATAATA 16076 35 100.0 38 AGAAATAATA ................................... ATTGTTCTGATTGAGTGTTTCGCCAAGCACCCCGATTG 16149 35 100.0 39 ACCCCGATTG ................................... GCGAGTCCTACCGATGTTGCGAAAACACTGATTGCACTT 16223 35 91.4 GATTGCACTT ....................C............CG AATCCAGT ========== ====== ====== ====== ========== =================================== 11 35 37 GTTTCAATTAACTTCCCCTTTACGGGGACGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.29%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.10,-9.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [382,175] Score: 0.18/0.18 # # Final direction: R [0.59,5.14 Confidence: HIGH] >NC_019740 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 30328 37 97.3 34 TCAGCGAAGA ....................................T GTTGGTTGAATAACAGGCGCAGGAGCCTGTTGTG 30399 37 100.0 36 GCCTGTTGTG ..................................... TTTGTACCAGGAGTAGAGGTAGGGGGTGTGGTAGTA 30472 37 100.0 36 TGTGGTAGTA ..................................... AGAGTCGGAGGAAGTTGGAGGGTTTTCCTCCAAATC 30545 37 100.0 CCTCCAAATC ..................................... AAAAGTTCAGG ========== ====== ====== ====== ========== ===================================== 4 37 35 GTTTACGCAAGCACTTCCCCGCAAGGGGATGGAAACG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [10,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-9.30,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [48.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [494,237] Score: 0.18/0.18 # # Final direction: F [0.92,0.68 Confidence: LOW] >NC_019740 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 54490 37 100.0 33 AGATGGCGGA ..................................... CTTCATCGCCATCACGGGAGGGGCGGGGAGGAA 54560 37 100.0 42 CGGGGAGGAA ..................................... ATACGAGGAATACCATCAATTCCACCTAAATTCTCAAGTGCG 54639 37 100.0 34 CTCAAGTGCG ..................................... AACAGGTAACATGTTTGAAGCTACATTACCAAAA 54710 37 100.0 34 ATTACCAAAA ..................................... AGTTATTTAAACTCCTGTCATTTATTGCACTAGT 54781 37 100.0 38 TTGCACTAGT ..................................... AACTGTATAACCTTAAGTATTTAGCTTAAGTAACCTTG 54856 37 100.0 40 AGTAACCTTG ..................................... ATTGGACGCTGTGCCAATTTCTCAGCCATTGAACAAGCGA 54933 37 100.0 40 GAACAAGCGA ..................................... ATTGGACGCTGTGCCAATTTCTCAGCCATTGAACAAGCGA 55010 37 100.0 40 GAACAAGCGA ..................................... GTTGAAATATACATTGTTCTAACCTCGTATTAAATCAAAA 55087 37 100.0 37 TAAATCAAAA ..................................... GAGGTGATCGAAGAAAGTTCAAATTCAGGTGAAGACA 55161 37 100.0 GGTGAAGACA ..................................... ACAAAGACCAA ========== ====== ====== ====== ========== ===================================== 10 37 37 CTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [10,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-9.30,-10.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [219,237] Score: 0/0.18 # # Final direction: R [0.37,0.64 Confidence: LOW] >NC_019745 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2248606 37 97.3 36 CCATATTGTA -.................................... TTCAAGTGTTTATCCTTGCATTCCCCGCAATGCTAA 2248679 37 100.0 36 GCAATGCTAA ..................................... TCTTCGTAATACGAGTTACAAGGTACTTCAGCAATA 2248752 37 100.0 35 TTCAGCAATA ..................................... CAAGCTCCTAATAATTTCAGCAGAGTAAGCGCTTT 2248824 37 100.0 34 TAAGCGCTTT ..................................... AAAAGTTGAGTACATCGACAAAGTAATCACAAAA 2248895 37 100.0 34 AATCACAAAA ..................................... GCAAAAGATTTGGCTTTGGACCAAGGACGGCATC 2248966 37 100.0 34 GGACGGCATC ..................................... CGCAGCTTGCTATTGGCGAACAAAGACTGGTAAA 2249037 37 100.0 35 GACTGGTAAA ..................................... GCGATCGCATGGCTAAAAGTTATTGAAAATTCTTT 2249109 37 100.0 36 AAAATTCTTT ..................................... GTTTTTATTGCGATCTTCTACGATACGTCTTGCGAC 2249182 37 100.0 35 GTCTTGCGAC ..................................... CTCTTTAATATACCAGCCCGCAACGATAGCGGTAT 2249254 37 100.0 38 ATAGCGGTAT ..................................... GCCCTGTAACCGCAAAGCAAGCGATTTACACGGAATCC 2249329 37 100.0 34 CACGGAATCC ..................................... AGCACTCAAGGTGGCCCGTAACATTGCAGAGATG 2249400 37 100.0 34 TGCAGAGATG ..................................... GAAGAATCGTGGAAAATCTTTTACGATTTACTGC 2249471 37 100.0 35 GATTTACTGC ..................................... TTGATGCATTTTGTGGGTATACGGAATCAATCGCT 2249543 37 100.0 39 ATCAATCGCT ..................................... TTAATTAAGGCACCCGTTTTATTCCCTTCCAAGTCCTGC 2249619 37 100.0 36 CAAGTCCTGC ..................................... AAGTTTTTTAAAGTACCCAAACAAGGTGGTGCTAGT 2249692 37 100.0 36 TGGTGCTAGT ..................................... GGGTTTTGGGACACAGCTTCGATCTGGCAATATATT 2249765 37 100.0 36 GCAATATATT ..................................... CTGCGGGGGCAGGAGCTTTTACTGGAATTACGCTTG 2249838 37 100.0 36 ATTACGCTTG ..................................... AAAGTTTAACAAAAACTTGTTTAAAAAAACAAAGGC 2249911 37 100.0 37 AAACAAAGGC ..................................... TCAATATTGCCACCACGCACAGCAAATTCAATTTTTT 2249985 37 100.0 35 TCAATTTTTT ..................................... CGAAGTAAGTATTCGTCGTTATACTTGCTTAAAAT 2250057 37 100.0 35 TGCTTAAAAT ..................................... CGCAAGGAATTGTGCCTAACGCCATCCATTTCGCC 2250129 37 100.0 33 CCATTTCGCC ..................................... GCGCGTAAAGCAATGAATCAAATCACAGAACAC 2250199 37 100.0 34 CACAGAACAC ..................................... GAGTATTGCCCTCGCTTGTGGCGACTCAACTCTT 2250270 37 100.0 34 CTCAACTCTT ..................................... CGACGGCTAACCCAGTAATATGCAGCGAGTTTTT 2250341 37 100.0 38 GCGAGTTTTT ..................................... TTGCGATCGCCTAATCAATACATTTGCATGGCTTCAAA 2250416 37 100.0 37 TGGCTTCAAA ..................................... CTTGGGTGTATCTACAGGACAAACTATGGCTTTTGAT 2250490 37 100.0 34 GGCTTTTGAT ..................................... TTTGCAGGGAAATACAAAGCTGTTGCAGTAAGTC 2250561 37 100.0 35 GCAGTAAGTC ..................................... AGTACTTCGATTGCTAAACTTTGCAACTTCACTCA 2250633 37 100.0 34 ACTTCACTCA ..................................... ACTATCGATTACGTTAGAAAAGGGTTACAATCCG 2250704 37 100.0 TTACAATCCG ..................................... AGCGGCTCTC ========== ====== ====== ====== ========== ===================================== 30 37 35 GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-8.90,-8.90] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [292,168] Score: 0/0.18 # # Final direction: R [0.27,4.91 Confidence: HIGH] >NC_019748 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 534533 36 100.0 43 AATGAAGGGA .................................... CTTGGTGACAAAATAATTAACGTTTCTGCCCATTTCAGCCATT 534612 36 100.0 37 TTCAGCCATT .................................... CGGAGTAAAACCCCAGCTTCCCATTGCCATTCAAGTT 534685 36 100.0 38 CATTCAAGTT .................................... AACGGTTAAGTTTCCAATTACGCCAGGATCGCTATAAC 534759 36 100.0 38 TCGCTATAAC .................................... AAAGAGCCGAGAACGACATCAGGACGGGAGGGACTTAC 534833 36 100.0 46 AGGGACTTAC .................................... CAAGCAACACATTCTTGTGTTTTTTTCCAAGGGTATTCTTCGCCAA 534915 36 100.0 37 TCTTCGCCAA .................................... CTAAAATTTTTCTGAGGTCTTTCGATAAGTCTGACGC 534988 36 100.0 41 AGTCTGACGC .................................... CTTTTAAAATCTCTTGGGAAAGCGATCGCCTTCTTTGGATT 535065 36 100.0 TCTTTGGATT .................................... TCGTCGTGGA ========== ====== ====== ====== ========== ==================================== 8 36 40 CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:69.44%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [191,47] Score: 0.18/0.18 # # Final direction: F [0.18,0 Confidence: MEDIUM] >NC_019745 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3442926 36 100.0 37 AGCGTTCGGC .................................... ACGGGCTTGCCTGTATCCTTGTCCAATGACATAGATA 3442999 36 100.0 38 GACATAGATA .................................... TTTTGATTTTCTAACTCAAGCTCCCGAATGCGATCGCT 3443073 36 100.0 35 TGCGATCGCT .................................... GGAACTAATCGCTATTTCGTTAGCGGAAGTCTTGG 3443144 36 100.0 35 GAAGTCTTGG .................................... GCTATATTTAATTCTTTTTTCACCCAATTACGAGC 3443215 36 100.0 36 AATTACGAGC .................................... TCGATAGCCGCGCCGCTCGCCATCAGCCGTTCAGGA 3443287 36 100.0 35 CCGTTCAGGA .................................... ATCATCAATTTCCAAAACAGCACAGACATCCTTAG 3443358 36 100.0 36 ACATCCTTAG .................................... TTTCTGATCCTGGAACGTATGGAAATCCGTTAAAGT 3443430 36 100.0 37 CCGTTAAAGT .................................... AAGCTGTGCGCCAAAACTTCGGAAGTCTTCAGATGCT 3443503 36 100.0 35 TTCAGATGCT .................................... GTGTAAGTCAGTTAGAATCTGACCTACAGCGCCTT 3443574 36 100.0 41 ACAGCGCCTT .................................... TGTTTATTTCTAGCTGCACTAACTTTAGGTACCATCAACAT 3443651 36 100.0 36 CCATCAACAT .................................... ACCTTCCCTAGCTTGACTGCGCGTCGTAAAAATCGC 3443723 36 100.0 34 TAAAAATCGC .................................... ACGCACGCGGGATTGGTGGGCGTTTATTGCAGCA 3443793 36 100.0 35 TATTGCAGCA .................................... TTTACGTCGAAAGCGTGGTTTGACTGAGTAAACGC 3443864 36 100.0 38 GAGTAAACGC .................................... ATACCGCTGTTGCGATTGGTGACGACGAAGTTACTCTA 3443938 36 100.0 35 AGTTACTCTA .................................... TGATAGTAAATACGCCTTAGAAGTTGCAAAATGTG 3444009 36 100.0 35 GCAAAATGTG .................................... ATTCAGGCAGCGGGGAGAATCAGAGCGAACAATCG 3444080 36 100.0 36 CGAACAATCG .................................... AGTCTCGTAATGGTGCGCGCGTTGAGTTTTTAAAGA 3444152 36 100.0 36 TTTTTAAAGA .................................... AATAGCGCTAGCGCGTCTTACACACGCGTCTAGGCG 3444224 36 100.0 37 CGTCTAGGCG .................................... GCATGATTGGGCTTGCTGAGGCTGCTGAGGATTTTAA 3444297 36 100.0 34 AGGATTTTAA .................................... TGTAAGGCGCGTTACACCATGAAATTCAACAGAT 3444367 36 100.0 36 TTCAACAGAT .................................... TGCTGGGAAGCTTTCTGCCCGTGTACGGATTGACAA 3444439 36 100.0 35 GGATTGACAA .................................... AAAACCGTAACACCATCAACCCAGTTATTCAAAGC 3444510 36 100.0 36 TATTCAAAGC .................................... GCAAACCAGATGCGATTGCGCGCTGATTTTAGCTTA 3444582 36 100.0 36 TTTTAGCTTA .................................... ATCCAGATATCTGCGCCCAACGACTCAGCAATTTCT 3444654 36 100.0 35 AGCAATTTCT .................................... CGGCGTGCCTTGCGGCTGTAGATTTTCACTGTGAG 3444725 36 100.0 37 TCACTGTGAG .................................... TTTTATCCTGCTTTTCTGATGGTGTGGCACTATACTG 3444798 36 100.0 36 CACTATACTG .................................... GTCGCGTTGTGGGAACTAGCAACAGCGCCACTAACA 3444870 36 100.0 37 GCCACTAACA .................................... ACTACATGTGCGGTTACCGTAACGCAACGCTAACTCT 3444943 36 100.0 36 CGCTAACTCT .................................... TTGATGAGGAGATCGGATGGATTTCTAGTAGAAGCG 3445015 36 100.0 36 AGTAGAAGCG .................................... AATGAAGATGAATGAGCAGCCAAATTCACGAGCGAT 3445087 36 100.0 34 CACGAGCGAT .................................... ATATTCGTTACTGTTTAATTATTGTAGTAAGCTA 3445157 36 100.0 36 TAGTAAGCTA .................................... TTACGTGGGTCTAGTGCTTCTCCTTTGCCCAAACCT 3445229 36 100.0 35 GCCCAAACCT .................................... TACCTAACCATTCCACGCGAAGACTTCGAGAAAAA 3445300 36 100.0 35 TCGAGAAAAA .................................... CTAGCTGCATCAAAAAGTACGTCTGCACTAAAGCT 3445371 36 100.0 35 CACTAAAGCT .................................... TCTATAGGTTTGTAACTCATGGTCGTCTGAATGTT 3445442 36 100.0 36 TCTGAATGTT .................................... CTTCCCAAAGTTCTTCTCTGAGTTCGGGCTTCTCCT 3445514 36 100.0 36 GGCTTCTCCT .................................... AAGATGAATTCCTAATTTACGTCGTAGATGAGGAGG 3445586 36 100.0 39 GATGAGGAGG .................................... AGGATAATCAGCACTGGAGACTACCCAAATCAGAGTCTG 3445661 36 100.0 36 TCAGAGTCTG .................................... AAAGTCTACAGCAGCCAAGCACGCTGCATAGGGTTC 3445733 36 100.0 34 CATAGGGTTC .................................... AGCGAGCAATCAAGTCGATTGACTTTTTAGCAGT 3445803 36 97.2 37 TTTTAGCAGT ...........................T........ CCTTAAACAACGTGCGCCAGCTATCAGGCTTACCTGC 3445876 36 100.0 35 GCTTACCTGC .................................... GAGGAGTAGGTAAATCACTGCTCTCCTACGATATT 3445947 36 100.0 36 CTACGATATT .................................... CTAAATCGGCCGTTTTTATCCTACTTCTTACAGTCT 3446019 36 97.2 37 CTTACAGTCT .......C............................ GGAATTAGTACCGATTGCTAGCGATCGCTATGAGGAT 3446092 36 100.0 CTATGAGGAT .................................... TGGTGATTGC ========== ====== ====== ====== ========== ==================================== 45 36 35 GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.00,-4.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [255,149] Score: 0/0.18 # # Final direction: F [0.78,0 Confidence: HIGH] >NC_019745 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 5170418 37 100.0 36 CAGCCACGTG ..................................... TATCTTGGAAGAATTCGAGCGGGCTAAGCCTTTTTA 5170491 37 100.0 35 AGCCTTTTTA ..................................... TTTCAATGTTTGGACAGCAGGTAAACCCACGCTGA 5170563 37 100.0 34 CCCACGCTGA ..................................... AGCCTGCTAAATCGCTACTGTAAGGCGCTCCGTA 5170634 37 100.0 40 GCGCTCCGTA ..................................... ATGGCACCTCTATTCCTCTCAGTTCGCAAACGATGGGGGT 5170711 37 100.0 39 CGATGGGGGT ..................................... ACTAGCACCACCTTGTTTGGGTACTTTAAAAAACTTAGC 5170787 37 100.0 35 AAAACTTAGC ..................................... TTCGTCTTCTGGTTTCTCGGTGGCTACTTCCACGT 5170859 37 100.0 ACTTCCACGT ..................................... TCTAACTGCCT ========== ====== ====== ====== ========== ===================================== 7 37 36 ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.97%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.80,-2.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [263,1584] Score: 0.18/0.18 # # Final direction: F [0.37,0.18 Confidence: MEDIUM] >NC_019748 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3071543 36 100.0 36 AAGTTATAGG .................................... GAGCAACAGGTTCCACCATGACCCATTCATTCGTGT 3071615 36 100.0 35 TCATTCGTGT .................................... CGGTTAACTAGCTCTGCCTCCGAATCTTTCTTTGC 3071686 36 100.0 38 CTTTCTTTGC .................................... AAGTCACCCTTCCCGATTCCCCGCAAAAAACTGATCCA 3071760 36 100.0 36 AACTGATCCA .................................... CTAGCTAGCTTTAGATTACTTTGGTGCGTGTCGACA 3071832 36 100.0 38 CGTGTCGACA .................................... TAGAATACACAAAAAGATAGCTAACATTCGCAAAGATA 3071906 36 100.0 35 CGCAAAGATA .................................... GATCGTCAATAATCCTTGAGCAAAAAGACTTGGTT 3071977 36 100.0 36 AGACTTGGTT .................................... ATAAGATTTGAAAATCATAACCACTTGTTCTATTTA 3072049 36 100.0 37 GTTCTATTTA .................................... TTAGTAATGCTATAAGTTGAAGCAGCAGCGTCAATTG 3072122 36 100.0 GCGTCAATTG .................................... GGCAGTCGCC ========== ====== ====== ====== ========== ==================================== 9 36 36 GTGATCAACGCCTAACGGCATCTAAGGTTAGTACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.60,-7.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [61.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [213,255] Score: 0/0.18 # # Final direction: R [0.27,0.37 Confidence: LOW] >NC_019745 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 5171228 37 100.0 37 CAGCGATCGC ..................................... GTCGCTGGGGTACGCCGAAATCGCAAGCATCTAATGC 5171302 37 100.0 34 CATCTAATGC ..................................... AATTTCGCGCTGCTGCATAAGCTGGGAAGATTTT 5171373 37 100.0 35 GGAAGATTTT ..................................... TTTGAGGAACCAGAGTTAGCGTCTGCTTTAGTAGC 5171445 37 100.0 35 CTTTAGTAGC ..................................... AAAACCCAATACAGGGCAAAAACCAGCCGCGATCG 5171517 37 100.0 34 GCCGCGATCG ..................................... CGCTTAGGGCAGTTTGTAGCACGCAAACTGGGCA 5171588 37 100.0 35 AAACTGGGCA ..................................... CCTTACGGATTTAAGGGACTTGCAGCGAATGAACC 5171660 37 100.0 33 CGAATGAACC ..................................... AGCCAATCTTTGTAAAACTGACCGCTATACCTG 5171730 37 100.0 35 GCTATACCTG ..................................... TCGGCGGATTTAAATTTATGTCCTTAACTAAACGC 5171802 37 100.0 38 AACTAAACGC ..................................... AAGCCCGTAGCATTGTATAAATCCTGGAAGCATACCCA 5171877 37 100.0 33 AGCATACCCA ..................................... CTACTAGTTCAGGTTCGGACAACCACATCTTAC 5171947 37 100.0 35 CACATCTTAC ..................................... TTTATTTCCAAGGCATTGCGTACGGCTGCGGGAGT 5172019 37 100.0 35 CTGCGGGAGT ..................................... TTATGAGCGTTCAAGCAGCAGCAGCAGCGATTGGG 5172091 37 100.0 34 AGCGATTGGG ..................................... GGATAGCTGACTTGGATCGACTAACTTTTTCCAC 5172162 37 100.0 CTTTTTCCAC ..................................... CTGGAGGTGTAGTACCTCCAATATAAACAGTAGT ========== ====== ====== ====== ========== ===================================== 14 37 34 ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.97%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.80,-2.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1073,281] Score: 0.18/0.18 # # Final direction: F [0.55,0.27 Confidence: MEDIUM] >NC_019748 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 536594 36 100.0 40 AGTCGATGTT .................................... AAAGAAACCCCTTGATAAAGGGGTGCCGTATTACCAAAAT 536670 36 100.0 43 TTACCAAAAT .................................... ATTGTCCCGACACGAGAATTAATGCCTGGGATGGTTTTGGAAC 536749 36 100.0 39 GTTTTGGAAC .................................... TTTGGGTCTAATTGCTTGGCAATCTCGGCAATTCTCTCT 536824 36 100.0 40 AATTCTCTCT .................................... ACCAAATTTCATGCTCCTGTTGTGTTATGGGGTTATTTTC 536900 36 100.0 37 GGTTATTTTC .................................... TTTTTTGTTTAAATATTCTGAGATTAATTGTCGTCAT 536973 36 100.0 42 TTGTCGTCAT .................................... TGAAATACCTGCCTAATCCCCCAAAGTGAACTGGGTCTAGAA 537051 36 100.0 36 GGGTCTAGAA .................................... GAAAATGATTACAACTTACAACTTTTAGAAAAAGAA 537123 36 100.0 37 AGAAAAAGAA .................................... TTTTTTGTTTAAATATTCTGAGATTAATTGTCGTCAT 537196 36 100.0 41 TTGTCGTCAT .................................... CCGAACCATTCCCAGACTGAGATAATATTCATCCAGTAGAT 537273 36 100.0 43 TCCAGTAGAT .................................... AATAGTCTTTATAAATTTGTTCCGAGTCAAAGTTTTTTTCTAC 537352 36 100.0 42 TTTTTTCTAC .................................... CTGATAGTCTCCGTATCCAGGTATATCCTTACAAGCCACTTT 537430 36 100.0 40 AAGCCACTTT .................................... CGCCAAACACTTAAATATAGCTGAAGCAGCAATTATCAAA 537506 36 100.0 40 AATTATCAAA .................................... ACTGTGTTTAAATCTGCAATGCGGAATAGTTTATCGACAT 537582 36 100.0 36 TTATCGACAT .................................... TAGCACTGTCGATAATCCGTAGTATGTGTACTGTAA 537654 36 100.0 37 TGTACTGTAA .................................... TGCCTTTTATTAGTAGTAGCCTCATACACTCTATTTA 537727 36 100.0 41 ACTCTATTTA .................................... TAGATATTTGCATTTTGCATTTTGCCTTTTGACTTATCTAA 537804 36 100.0 41 ACTTATCTAA .................................... TAGACAACTATTGGGATATACCGCTACTAAATCTCTTCTGA 537881 36 100.0 TCTCTTCTGA .................................... CTTCGTTAAT ========== ====== ====== ====== ========== ==================================== 18 36 39 CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:69.44%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [94,110] Score: 0/0.18 # # Final direction: R [0,0.27 Confidence: MEDIUM] >NC_019751 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1621155 37 100.0 36 AGACGGTCGG ..................................... GTATCAAATTCGACTCTAATGGTTATCAAGTGATTG 1621228 37 100.0 34 CAAGTGATTG ..................................... CCTAAGTCTGGGCGGGTTGATATTCCTACTGATT 1621299 37 100.0 37 CCTACTGATT ..................................... TTAACGTTGGATATATTGGAGATTTTTGCACTGCCGT 1621373 37 100.0 35 GCACTGCCGT ..................................... TCGTCTTTAATTTTTTCTAGGGAAACTTGAAACTC 1621445 37 100.0 40 CTTGAAACTC ..................................... AAGCCTAGCTTTGTAGGAGCAAAAAATGAACCAACATGAA 1621522 37 100.0 35 CCAACATGAA ..................................... CTGCAACCGCAAATATTCGTCCTCATATAACACTA 1621594 37 100.0 TATAACACTA ..................................... ACGGTTAGAC ========== ====== ====== ====== ========== ===================================== 7 37 36 GTTTCAACTACCATCCCGACTAGGGGTGGGTTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [9,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-12.90,-7.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [56.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [589,826] Score: 0/0.18 # # Final direction: F [0.64,0 Confidence: HIGH] >NC_019751 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2021864 37 100.0 33 TCTCAAAGCG ..................................... AGTTGCTTTTCCTGATAAAGATTGCCCGGAAAA 2021934 37 100.0 35 GCCCGGAAAA ..................................... CTTACTCAGCAGGAAGATATCAGCAACTGAATGAC 2022006 37 100.0 34 ACTGAATGAC ..................................... CAACCCCTAAGAGTGAGCGCCAAAGAATTCTAGC 2022077 37 100.0 36 GAATTCTAGC ..................................... AACGAAAATCTAGATGATTTTAGGGCTAATTTTGCT 2022150 37 100.0 42 TAATTTTGCT ..................................... AGTTAGCGCAGAAACCAGGCAGCAAGCAATCAGGCAATTCTT 2022229 37 97.3 34 GGCAATTCTT ............C........................ ATCTGGGCTATGACGAGTTAACTCATTTCACGAA 2022300 37 97.3 33 ATTTCACGAA ............C........................ TCATAACGGTGCAACTTGGGGGATAAATAATGA 2022370 37 97.3 36 TAAATAATGA ............C........................ AAAGAAGTATAAGTCTGAATAAGTCTGAATATCCCT 2022443 37 97.3 37 GAATATCCCT ............C........................ CCTTTGATTAGCTATCAACCTGGCGACAAGGCTGTAG 2022517 37 97.3 34 AAGGCTGTAG ............C........................ TTGATAATAGTATTCTGAATACTCTGGTGTAATT 2022588 37 100.0 35 TGGTGTAATT ..................................... AGTAACCATTCGTTCGCGGAATCTTTACCCATACT 2022660 37 100.0 TACCCATACT ..................................... CCAGCACGAG ========== ====== ====== ====== ========== ===================================== 12 37 35 GTTCCTATAAACTAAAATCCCTATCAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.50,-7.40] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [3284,54] Score: 0.18/0.18 # # Final direction: F [4.95,0 Confidence: HIGH] >NC_019751 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2038085 37 100.0 35 TCTCAAAGCG ..................................... AGATATACGCTCAATCATCATCATAATTTCCTTTT 2038157 37 100.0 40 ATTTCCTTTT ..................................... ATTTTAAAGCAGGCGCTAGAATTAGCAGAAGCAAAATCAC 2038234 37 100.0 34 GCAAAATCAC ..................................... TCAAACCTTAAATCGGTTGCTATCAGCATATATT 2038305 37 100.0 35 AGCATATATT ..................................... CTAGTAGGAACTACCAACGAGTCGGAAATTTTAAA 2038377 37 100.0 35 AAATTTTAAA ..................................... TTAGCGAATGTGACCGAAGAATTGAGCGACGAACT 2038449 37 100.0 37 GCGACGAACT ..................................... CAACTAAATCCCCAATCATCCTGTTTTGTTGTTGGGT 2038523 37 100.0 34 GTTGTTGGGT ..................................... GCGTCCTCAATAACTTTTGTAAATGCGGCTTTTT 2038594 37 100.0 34 GCGGCTTTTT ..................................... CTCTGGTCGCTACCTGGCGCTGCGCGCCAGGTCA 2038665 37 100.0 36 CGCCAGGTCA ..................................... CTAAAACCTTTTTAGGTCAAGCCGTTACAGGACTTA 2038738 37 100.0 38 ACAGGACTTA ..................................... ATATGCGATCGCGCCAAATCTCAAAGTAGGATCTTCAC 2038813 37 100.0 36 GGATCTTCAC ..................................... CAAGCTTTGTACAACTTCAAGAAAAATCAAATAGTT 2038886 37 100.0 36 TCAAATAGTT ..................................... GGACGAAGGCAGCTTCGACGGATTACTAAGTGCATT 2038959 37 100.0 36 TAAGTGCATT ..................................... CGCAGTTACTGTTCCCCTGCGAAAAGTCAACGTGGA 2039032 37 100.0 34 TCAACGTGGA ..................................... CTAATATCTTGATCACATCCTCCACCAATAGCAG 2039103 37 100.0 39 CCAATAGCAG ..................................... CGAGGTATGCAGCTATAGACCCGCTGCGTCCTCTGTTCC 2039179 37 100.0 35 CCTCTGTTCC ..................................... CTTTATTCGATGAAATTTTCTGGGCTGAAGGTACT 2039251 37 100.0 TGAAGGTACT ..................................... GACGAGTAAA ========== ====== ====== ====== ========== ===================================== 17 37 35 GTTCCTATAAACTAAAATCCCTATCAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.50,-7.40] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [261,34] Score: 0.18/0.18 # # Final direction: F [4.95,0 Confidence: HIGH] >NC_019751 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 316560 35 100.0 36 AAAGGCTAGC ................................... GAAACTGCTTCTGCTGATTGAGTTAAAAAGGATTTT 316631 35 100.0 40 AAAGGATTTT ................................... CTCTGTACCTCTCCCCTGTATCGTTGCGCATAGATTGCGA 316706 35 100.0 37 TAGATTGCGA ................................... TAGATATTTTCTCTATTTCACGACCATCTTTTTTAAT 316778 35 100.0 36 CTTTTTTAAT ................................... TTGAAGTTTCCGTCTGTTACAAAATCATCTAAATTG 316849 35 100.0 37 ATCTAAATTG ................................... GAGGATAAATTTAAAAAGAATGAAGTCGATACGATCA 316921 35 100.0 35 GATACGATCA ................................... GAAATGGATAATTTTTGACCGAATACCACTTTTCT 316991 35 100.0 37 CCACTTTTCT ................................... TATATGATTCGCTGCTAAAGTATTTTTCAACCTTCTT 317063 35 100.0 35 CAACCTTCTT ................................... TTTTTACTCTTTCAAAATAAGAGTCAAAATTTTTT 317133 35 100.0 38 AAAATTTTTT ................................... AGTAGCACAATCCCATTCAGTAATTGCACATACTTTTC 317206 35 100.0 37 CATACTTTTC ................................... ATTGTTTGCCACATATTCTGAAAATAAAACACGAGTT 317278 35 100.0 37 AACACGAGTT ................................... ACATTTAACAAATTATTTTGTCAAATCTGAAAAATCA 317350 35 100.0 TGAAAAATCA ................................... ATAGATTAAG ========== ====== ====== ====== ========== =================================== 12 35 36 CTTTAAACTTCTTCGGAAGTTGAATTAATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.90,-4.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [205,303] Score: 0/0.18 # # Final direction: F [0.37,0.27 Confidence: LOW] >NC_019751 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 324319 35 100.0 39 AAAGACTAGC ................................... TAGGAAGTTTTCGCTTGGGTATTGCTTAATTTAGCAGAG 324393 35 100.0 35 TTTAGCAGAG ................................... TATTTAAGGCTATATCGCTTCTAAATTGAGAGACA 324463 35 100.0 44 TTGAGAGACA ................................... AAGACAGAGATATGTCCTCAAAGAGAAATGAGTTTGTCTCAATT 324542 35 100.0 36 TGTCTCAATT ................................... TTTTATCTGCTTTTGTAAACTCTCCCCAATGCAAAG 324613 35 100.0 36 CAATGCAAAG ................................... ACTGGTTTGCCGCTTGAGTGGGCATAGTCAAAAAAT 324684 35 100.0 36 GTCAAAAAAT ................................... AGTTTGAGTCTCGGTCTCGGTCTCGGTCTCGGTCTC 324755 35 100.0 39 TCTCGGTCTC ................................... TTTACACGATTCTGGAACGTTACTAACATCCCATCAGGA 324829 35 100.0 35 CCCATCAGGA ................................... TCGTTGAGTTGGTACACCAGCTGACTCTCAATTTG 324899 35 100.0 36 TCTCAATTTG ................................... ATTAGGGTCTCTGTAGATCTTAAATTCCTCAGAGTA 324970 35 100.0 35 CCTCAGAGTA ................................... GAATGAAAAGATTTTTACATCTTTTGCTGATAAAA 325040 35 100.0 36 GCTGATAAAA ................................... GTGTAAGTCACGGAATTTTCGGTTGAACTAACTAAT 325111 35 100.0 35 ACTAACTAAT ................................... CTTTGATGTAAGAAAACTCATCACTAGCAAAAAAA 325181 35 100.0 38 AGCAAAAAAA ................................... GGGGCTCTTAGCTCTGCCCGTAATTCGTCGCGGGACTT 325254 35 100.0 36 CGCGGGACTT ................................... GTGTCGCTGCTTTCAACTTCTGCTGCACAAACTACG 325325 35 100.0 34 ACAAACTACG ................................... CTGAATTTTGTTATTCTAACCTCCACTCCACATG 325394 35 100.0 ACTCCACATG ................................... AAGGAATTCC ========== ====== ====== ====== ========== =================================== 16 35 36 CTTTAGACTTCTTCGGAAGTTGAATTAATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.71%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.30,-3.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [2077,393] Score: 0.18/0.18 # # Final direction: F [0.55,0 Confidence: HIGH] >NC_019751 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 328044 37 94.6 37 ACGTGTTTTA -.....................G.............. AAGCGGCTGAATTTAAACCCGAAACCATCCAAGAATA 328118 37 97.3 33 TCCAAGAATA ......................G.............. GATTACAAACCTTGGTGTTTCTACCCAAATTGC 328188 37 97.3 35 CCCAAATTGC ......................G.............. ATAATCAACCTAGCGGGATAAATCTTCCTTATTTA 328260 37 97.3 35 TCCTTATTTA ......................G.............. ATTGAATTCATCCACCTCATCATCTGTATCGAAGG 328332 37 97.3 34 GTATCGAAGG ......................G.............. CAAAATCAACTGGCTAGCAACGAAGCTCAGATGC 328403 37 100.0 35 GCTCAGATGC ..................................... TTCAGAGTTGGAAAATTTATTTGCCGTTTGTACTT 328475 37 100.0 36 GTTTGTACTT ..................................... TTTCTTGCCACTTAAGATGCTGATAAGTTGTGTTGT 328548 37 100.0 37 GTTGTGTTGT ..................................... CAATATCACCCTTGGAAACTGGATCATCTACATAAAA 328622 37 100.0 33 CTACATAAAA ..................................... TTATCCATGTAATGTAATAATAGGTTGCTTTGA 328692 37 100.0 35 GTTGCTTTGA ..................................... CTTAAGGTAACGGCTAAGGATTATAAAGGAAATGA 328764 37 100.0 37 AAGGAAATGA ..................................... CAACAAAGCAGTTGATTATAAATTGAGCTTACCAAGG 328838 37 100.0 CTTACCAAGG ..................................... CCCGGCATCT ========== ====== ====== ====== ========== ===================================== 12 37 35 GTTTCCATTAATTCAGCTTCAAAAGAAGCTTTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [132,705] Score: 0.18/0.18 # # Final direction: R [0.27,0.96 Confidence: MEDIUM] >NC_019753 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1168467 37 94.6 52 GATATCTAAA -........................G........... TCTTAAAGCCCAAACTCAAATATGGTGACGAGTATCCTCTGGATATTAAGAA 1168556 37 100.0 41 ATATTAAGAA ..................................... GTACTTATCATGGCTCATATCACTTTAATCGTTGCTAATGC 1168634 37 100.0 47 TTGCTAATGC ..................................... CAGAAGAAATACTCTGCCAAACTCGATGGTCTATGGTTGTTACAAGT 1168718 37 100.0 44 TGTTACAAGT ..................................... ACCTTTAACTATTCCAGTCTTACTCTTCATCCTTCTGAAGTTAG 1168799 37 100.0 CTGAAGTTAG ..................................... CCTATGGTTT ========== ====== ====== ====== ========== ===================================== 5 37 46 GTTTCCGTCCCCTTGCGGGGAAAAGATAGTATCTGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [8,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.70,-9.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [61.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [83,342] Score: 0.18/0.18 # # Final direction: R [0.27,1.33 Confidence: HIGH] >NC_019753 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 653799 36 100.0 42 NNNNNNNNNN .................................... ATTTTTTATCCAGATTTTTCCCCAAATTTGCAATAATTGCTA 653877 36 100.0 41 NNNNNNNNNN .................................... TTCTGTAGAGTTATTGTATAAGAACCCCACGTAGAAACGAG 653954 36 100.0 39 NNNNNNNNNN .................................... AGTCTCTTCTCCGGGAGGTTGAGTTCCTGGAGCTGTCTG 654029 36 100.0 43 NNNNNNNNNN .................................... CATTAATAGTATATTACCTTTGCACGTTTTGCATTTCCAGAAT 654108 36 100.0 39 NNNNNNNNNN .................................... CTTGTAATCGCAAACTTTAATCCTTTCATTTTTTTTCTC 654183 36 100.0 46 NNNNNNNNNN .................................... TTCATTGGTTTTGCCAGGATGATTTTTAGCAGCGCCAAAATCGAAA 654265 36 100.0 33 NNNNNNNNNN .................................... CTGGAGCTGGTTGTTGAACATTCTCACTATCTT 654334 36 100.0 38 NNNNNNNNNN .................................... GCCATTACATGGACCTGATCCAACTTGTAATTGTGAGT 654408 36 100.0 34 NNNNNNNNNN .................................... AAAAAATTCGAGTCGATGGGAGCATACAGTTTAC 654478 36 100.0 40 NNNNNNNNNN .................................... ATTCATGGCTTTCTGTAACTGAATCACTAATACAGCGACA 654554 36 100.0 41 NNNNNNNNNN .................................... TTAAATCTCCGATCTTTTGACGTGTGCCAATTACAAAATTG 654631 36 100.0 46 NNNNNNNNNN .................................... GAAAAGTTGTACCATGCACTATGGTACAACGAAATTGGACTAGAGA 654713 36 100.0 42 NNNNNNNNNN .................................... TTTCCCAATAGTCCGACAACTTTAATGAGTCAGCAGGATATT 654791 36 100.0 41 NNNNNNNNNN .................................... AAATTATCTATGCAACAGACCTCTTTACGAAGTTTTTTTTT 654868 36 100.0 37 NNNNNNNNNN .................................... TTCTTAATATATAGATTCTTTCACCGCCAGTTATTAC 654941 36 100.0 36 NNNNNNNNNN .................................... TATCTTTCTCCCAACTTCCGTGATCATGATTAGCAA 655013 36 100.0 33 NNNNNNNNNN .................................... CAAAGCATCCCACATAACTTCTTTCAACTGTTC 655082 36 100.0 37 NNNNNNNNNN .................................... CTTGTTCAGCATTTCTTGATACGTATTTACCAGTCCC 655155 36 100.0 40 NNNNNNNNNN .................................... AATACTCGAACAAATTTACAAGGAATAGTGAACGGTACTA 655231 36 100.0 37 NNNNNNNNNN .................................... CTCAACTTTCTTACAGGTTACCGTTAAATCAGCTGAC 655304 36 100.0 34 NNNNNNNNNN .................................... GCTACTCCCTCTTCATAGGACTTAACATCCTTTT 655374 36 100.0 41 NNNNNNNNNN .................................... AAATCCTTGCGCTGACTTTGACATTTGAACTTCTCCCCCAC 655451 36 100.0 39 NNNNNNNNNN .................................... AGATTTTGTTGTACCACCTTTATCAACCCAGTTTACCCA 655526 36 100.0 31 NNNNNNNNNN .................................... GCTTTGGAAGGATGTTCACTCATTAGTACTA 655593 36 100.0 41 NNNNNNNNNN .................................... ATTCTTCTGATTCCTTATTTAAATCTTCAGCTTTATTTTCT 655670 36 100.0 38 NNNNNNNNNN .................................... CTTAGGAAAGGATCTTCTTGTTCATAGATATTTAACAA 655744 36 100.0 39 NNNNNNNNNN .................................... TGCTGTAGTGACAGTCCATTGGTTTAAACTCAGATGATT 655819 36 100.0 37 NNNNNNNNNN .................................... GTAGGATCTGCAACAGCATTAGCGGGAGGATGTCAAT 655892 36 100.0 33 NNNNNNNNNN .................................... TTTTTTCCTTATTTGCTTCTAAAAATAAGTAAC 655961 36 100.0 37 NNNNNNNNNN .................................... GTGCTATGAGTGCTAGGTACAGTGACAAAATGTTTGT 656034 36 100.0 39 NNNNNNNNNN .................................... CAGCAACTCCCTCTTCGTAGGACTTAACGTCCTTTTGAA 656109 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 32 36 38 CTTCCACTAACCATTTCCCCGTAAGGGGACGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [10,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-9.10,-8.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [2901,1815] Score: 0/0.18 # # Final direction: F [0.74,0.27 Confidence: MEDIUM] >NC_019753 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 5029582 37 100.0 34 TGCTCCGGCA ..................................... AAAAAACAGTTCCCACCAATAGCAGTAATAGCAG 5029653 37 100.0 38 GTAATAGCAG ..................................... ATCTCTAGCCCAAGAGAAGCCAGCCATCCAATCACACC 5029728 37 100.0 36 CAATCACACC ..................................... CAGAAATTACGACAGACGCGCAAGCAGGATCAGCCA 5029801 37 100.0 34 GGATCAGCCA ..................................... AGCCAGATAATGATGATAATGCTAGAGGCTGTCC 5029872 37 100.0 34 GAGGCTGTCC ..................................... GCTGCTTTTTTATTGATAGTTCTTGATCTTCCAT 5029943 37 100.0 36 GATCTTCCAT ..................................... AAAAAATTAACTATTTACTTAAAAGTTAATTTTTTA 5030016 37 100.0 36 TAATTTTTTA ..................................... TTGAATTCTTGTTGTGTCATAACCAAGGTGGCTATG 5030089 37 100.0 36 GGTGGCTATG ..................................... AGATAGTAATAATGAACTTTTAAGCAGTGGCAAATA 5030162 37 100.0 36 GTGGCAAATA ..................................... AATTTCTTCAATACGCTCCCCCATCTGGCGTAATGA 5030235 37 100.0 34 GGCGTAATGA ..................................... ATGGAAGAGTATAAAGCCAAGGATGGCAAGATGA 5030306 37 100.0 32 GGCAAGATGA ..................................... TCGCCAGTTTGATTAATCAAAAAACTCCGGTC 5030375 37 100.0 35 AACTCCGGTC ..................................... TAAGTGTCTAAACTCTATCCCTAATTCTTCTAGTT 5030447 37 100.0 36 TCTTCTAGTT ..................................... TCTCTATTGATAAAATCCACTCGATTAATTGCTTCA 5030520 37 100.0 35 AATTGCTTCA ..................................... CAGACCTCCCCGACGAGACAGCATACTCAGAGGGA 5030592 37 100.0 34 CTCAGAGGGA ..................................... ATCAAAACTTACTGGTAGCAGCTAAGGAACTATG 5030663 37 100.0 35 AGGAACTATG ..................................... TACGAGAATCCTCTAACCATTCACCGTGGCTTGTA 5030735 37 100.0 36 GTGGCTTGTA ..................................... GAATTGTGATCGGCGTTGATACAAAGCTTTGAAAAC 5030808 37 100.0 31 CTTTGAAAAC ..................................... AGCATCTTCTGGATGTGAGCGTTTAAATTCC 5030876 37 100.0 35 TTTAAATTCC ..................................... TTTTACCTTTTACTTTGACGCTAGAAGGTTGCCGT 5030948 37 100.0 36 AGGTTGCCGT ..................................... GAGGGATAGTAAATCCTCCTCAGTTAAATCGTATAA 5031021 37 100.0 34 AATCGTATAA ..................................... TCATTAGACTTTCATACAAGTGAAGTTTTAAATA 5031092 37 100.0 34 GTTTTAAATA ..................................... ACATACAAAGGCATTAGCTGGTGGTACTACTAAT 5031163 37 100.0 34 TACTACTAAT ..................................... CCCTTATTAACTCTCTTTCAAACTGTGCAATAGC 5031234 37 100.0 35 GTGCAATAGC ..................................... GTAACATTTAAACGCCATACCATGCTCCTGGATCA 5031306 37 100.0 34 TCCTGGATCA ..................................... TGAAGCTTTATTAATATCATGCACAATCAAAGCA 5031377 37 100.0 40 AATCAAAGCA ..................................... CTGATGTAGTATTTCTTAAGCAATTAAATTATGGCTATAG 5031454 37 100.0 36 ATGGCTATAG ..................................... GTTTATTGCGATCGCCTTTACATTTTTCTAGGGGAA 5031527 37 100.0 36 TCTAGGGGAA ..................................... AAATGATTTAGTTATAGATGAAAATGTATCTCAGGC 5031600 37 100.0 35 TATCTCAGGC ..................................... GGTTCTGGTGCAGTTTCCATGCGATCGCTAATCGA 5031672 37 100.0 36 CGCTAATCGA ..................................... GGTTGAGTGAATAGTGATAGTTGCATAATTATTCGC 5031745 37 100.0 AATTATTCGC ..................................... CAATAAAAGC ========== ====== ====== ====== ========== ===================================== 31 37 35 GTTTAAATGCACCTAAATCCCTTTTAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.50,-7.40] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [269,246] Score: 0/0.18 # # Final direction: F [4.5,0.27 Confidence: HIGH] >NC_019753 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 669715 36 100.0 39 GTTGGGGGTT .................................... TTTACTGGCAGCAATTGGTTGTATATTGCTGGGATTATC 669790 36 100.0 37 TGGGATTATC .................................... TTACAACATCACAAACAACAAATTTCTAATATAATTA 669863 36 100.0 37 AATATAATTA .................................... TCTTCAAATTTAGAAATGGAAGTACTTTCCGTTGAAT 669936 36 100.0 40 TCCGTTGAAT .................................... GCGGTAACGTCTATTCCGGTAGCGGAGCAAATAACATGAA 670012 36 100.0 39 ATAACATGAA .................................... TGCTAAAGCGGATGATCCAAACAGCGAATTGAATAGTCT 670087 36 100.0 38 TGAATAGTCT .................................... CTTTCAAGTTGGAATCTGGGAGAGTTTCAAACAGCAAT 670161 36 100.0 37 AAACAGCAAT .................................... TAGTAACCCAAAAGATTTGTTAGGGTCAAAGAGTGAC 670234 36 100.0 40 AAAGAGTGAC .................................... AATTTTTTGGACTCGCCTTCCCTTTACCCGACGATTTACC 670310 36 100.0 39 ACGATTTACC .................................... GAATATGATCTCTGCATATATTTTCCCAAAGAATTTAAG 670385 36 100.0 44 AGAATTTAAG .................................... AATTTATTTTGAATCTTTTGACAACGTTTTAGGCGAACCAACAA 670465 36 100.0 36 GAACCAACAA .................................... TACTAATTTTGTTGATGCTCGCCAGCGTCCGCGTTC 670537 36 100.0 37 GTCCGCGTTC .................................... CGAGAAAGTCAAATTCTTGATGCGGTTGAAAAAAACC 670610 36 100.0 43 GAAAAAAACC .................................... GTAACTGCCGCTGGGGAACGTTATTATGTTCCTTCAGAAGACG 670689 36 100.0 40 TCAGAAGACG .................................... TCTGGTGATCAAAAGCAACCATCTCAACGGGATATTAAGA 670765 36 100.0 47 GATATTAAGA .................................... CTCTGGAAGTGGCTGGTGCAATCAGCAACCAACTCCGGGTGGTAATC 670848 36 100.0 36 GGTGGTAATC .................................... TCTAAAGGTTGAACTAAATCGAAAAGGGAGTCAAAC 670920 36 100.0 43 GGAGTCAAAC .................................... TCTTAAACGCGGATTAACATGGTTCCTGGAATATATAGAAAAT 670999 36 100.0 36 TATAGAAAAT .................................... GCAAGTTCAAAGTACGTATTTTCCTTAGGAGAAAAA 671071 36 100.0 38 AGGAGAAAAA .................................... TTGGCTTCACTCCTAATGTGAAAGCAGACGAAAGTATG 671145 36 100.0 34 CGAAAGTATG .................................... GTGCAGGTTGCACAGGGTTTGGATCTTCAACTTC 671215 36 100.0 41 CTTCAACTTC .................................... TCTTGCAAGCTACACAGCTCAGCAAGTTAGGAAGCTAGAGA 671292 36 100.0 36 AAGCTAGAGA .................................... CTCTTTTATAGAGATTTGTAAAACCAGCGTTTTTAT 671364 36 100.0 36 GCGTTTTTAT .................................... ATTACAGGACTTTTTGAACCTGCATACCAATGAAAC 671436 36 100.0 40 CCAATGAAAC .................................... TTTTAAGAATGGGGGTAACAATCCGGGAACTCCGCGTAGA 671512 36 100.0 34 TCCGCGTAGA .................................... TCAAAAACATTGTTTACTTTGCAGCATGGAAAAT 671582 36 100.0 36 CATGGAAAAT .................................... AGTTCCACCCTGGCTGGACATTATTTTTCCTAAAGC 671654 36 100.0 TTCCTAAAGC .................................... TCTTCGCTCA ========== ====== ====== ====== ========== ==================================== 27 36 38 GTTTCCGTCCCCTTGCGGGGAAAGTGGATTCGAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.70,-9.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [347,384] Score: 0/0.18 # # Final direction: R [0.27,0.74 Confidence: MEDIUM] >NC_019753 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 992622 37 100.0 37 GGCGACCGCA ..................................... AATTTTTTCGTCAGTGGTGGGAATGGTCTATTTATTT 992696 37 100.0 34 CTATTTATTT ..................................... AAAGACCTAATTCCTTATTAACCGCCTTGCGAAG 992767 37 100.0 35 CCTTGCGAAG ..................................... TTTTCAATAGCTGACCCATCAGGATTAATAGTTTT 992839 37 100.0 33 TAATAGTTTT ..................................... TTAAAGAACCATCAGGATTAGTAGTTTTTACAG 992909 37 100.0 48 GTTTTTACAG ..................................... CAGACTATAACCATAGGAAGCTTGAAAATCAACAATTTGATTACAGCC 992994 37 100.0 34 GATTACAGCC ..................................... GGATATTTTGACTATTAGTAGGTGCCCAAAGATT 993065 37 100.0 35 CCCAAAGATT ..................................... ACGGGAATGGCAGCAGAAGCGGCGGCGAGCGAAGC 993137 37 100.0 36 CGAGCGAAGC ..................................... AGAAATCCACTAGGATTATATTTTTTAATAGTATAA 993210 37 100.0 34 AATAGTATAA ..................................... AATTCGTAGCGGTCTAAGTTCTGAATCAACCTAG 993281 37 100.0 34 ATCAACCTAG ..................................... AACAAATCAACTGGTGTGGGTTAGGCTACTATTT 993352 37 100.0 35 GCTACTATTT ..................................... CCTTAATAGTCAAGGTGTAGAGTCTCTGGGGTTAC 993424 37 100.0 34 CTGGGGTTAC ..................................... AGGATTCGTAACACCGATGATATTAAGTACGTTG 993495 37 100.0 35 AAGTACGTTG ..................................... CTTGGCTACTATGGCGTGGGAACTTCAGTTGGCGA 993567 37 100.0 35 CAGTTGGCGA ..................................... GTTAGGGGTTTTTTCTCATGAATTATTCCTTTTTT 993639 37 94.6 TTCCTTTTTT ........TA........................... GATTATGTTG ========== ====== ====== ====== ========== ===================================== 15 37 35 GCGAAAATAGCTAATAATCCCTTTTAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.30,-7.30] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [58.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [255,214] Score: 0/0.18 # # Final direction: F [4.91,0.27 Confidence: HIGH] >NC_019757 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1088841 37 100.0 33 ACAGAATCGA ..................................... TAGTGAATTTATGCTAAGTGATATATCAGTTGC 1088911 37 100.0 34 TATCAGTTGC ..................................... GGATGTCCAAATGCTGAAGCAGATGAAATGGGTT 1088982 37 100.0 36 GAAATGGGTT ..................................... TAATAGAGTTGGCTAATAGAGAAAGAAAGTATACCT 1089055 37 100.0 36 AAGTATACCT ..................................... GTGGCAATTGATAGCTGAAAGTAGGTGCCAATGGAG 1089128 37 100.0 46 GCCAATGGAG ..................................... ATGGTTACGCATTCCAGCACTGGCTGAGTACTTCCAGCATGGCTAT 1089211 37 100.0 GCATGGCTAT ..................................... GGTTTTAATT ========== ====== ====== ====== ========== ===================================== 6 37 37 GTTTCAATCCCTAATAGGGATTTTGAGGAATTGCAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.40,-7.50] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [60.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [320,1405] Score: 0.18/0.18 # # Final direction: R [0,4.95 Confidence: HIGH] >NC_019757 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1089350 37 100.0 37 TTCTATTGTT ..................................... AATGTAGGCTTTTGGGTTGAGCAATCTGTAAATCCAG 1089424 37 100.0 36 GTAAATCCAG ..................................... GCTAAAGTACTTATGCTAGTTAGTAAGTCTTGATTA 1089497 37 100.0 37 GTCTTGATTA ..................................... TTTGTGCAACTGGTTAATAACTGCGATTGCCTCTTGG 1089571 37 100.0 36 TGCCTCTTGG ..................................... CCAAGAATCTTGCCAGCAAACATCTTGACGTGTAGA 1089644 37 100.0 42 GACGTGTAGA ..................................... TTGCCCAATTGTTACCGCCCGTTGTTCCGGCAAGTTACCCTG 1089723 37 100.0 37 AGTTACCCTG ..................................... GCTACACCACCCGCTTGTCCAATACCAGTTAGCTTTA 1089797 37 100.0 35 GTTAGCTTTA ..................................... ATTTCTAGAGTATCTTGGCGCTGCAAATAGATATT 1089869 37 100.0 34 AATAGATATT ..................................... CTAATGTCCTACAAACTCCGGCTTTCGTTTAAAC 1089940 37 100.0 34 TCGTTTAAAC ..................................... TCAGTCCAAAGCCCTGGATAGCGAGGAGATGGAA 1090011 37 100.0 34 GGAGATGGAA ..................................... GGTCTTCAGCATACACCGTGGTCAGATTCTTTGA 1090082 37 100.0 33 GATTCTTTGA ..................................... AAGGGAAGCTGAGTCATTAGCTCTTAGAGCTAT 1090152 37 100.0 34 TTAGAGCTAT ..................................... AAGATGTTTCTAATACGCTCAACACTGAGAAAGA 1090223 37 100.0 CTGAGAAAGA ..................................... AGCAGGCTTC ========== ====== ====== ====== ========== ===================================== 13 37 35 GTTTCAATCCCTAATAGGGATTTTGAGGAATTGCAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.40,-7.50] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [829,393] Score: 0.18/0.18 # # Final direction: R [0.18,4.5 Confidence: HIGH] >NC_019757 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3350944 37 97.3 34 TTCCATCAAA ......A.............................. CATGACCCCTTAACCTTTGCCGAAGCCCTTAAAA 3351015 37 100.0 36 GCCCTTAAAA ..................................... ATTTGTGACGTATGTGGAGAACGGCGCCCCATACAG 3351088 37 100.0 36 CCCCATACAG ..................................... TAAAGCTTATCTGTACAACAGTGATGTTTATATCAC 3351161 37 100.0 39 TTTATATCAC ..................................... CCAAAGCTAAAAGGTCTGATTGAAGTGCCTACCCCGGAT 3351237 37 100.0 35 TACCCCGGAT ..................................... CCATAGCCAACTGGACTAACTGTAAAGTTTGGGAT 3351309 37 100.0 39 AGTTTGGGAT ..................................... TGAGAAGTTGAAATCTCAAGCAGAGTCAATCATTAGAAG 3351385 37 100.0 34 TCATTAGAAG ..................................... TTAGTCAATTTGATACTAATGCCGAACTATTTTT 3351456 37 100.0 36 AACTATTTTT ..................................... GATGGGGAGAAAACATCCAAAGGTAAGGATTATTAC 3351529 37 100.0 35 GGATTATTAC ..................................... TTGTGGGTGGTGCGTTCTGTTTGTTTTTAGTTTTT 3351601 37 100.0 TTTAGTTTTT ..................................... TCCGCCATCT ========== ====== ====== ====== ========== ===================================== 10 37 36 GTTTCAGTCCCCTTGCGGGGAGTTGGTTAGCGGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,10] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.80,-9.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [45.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [6,649] Score: 0.18/0.18 # # Final direction: R [0,1.6 Confidence: HIGH] >NC_019757 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1101502 37 100.0 34 GATGCCAGCG ..................................... AAGATAAACTCCGAACTACCGGGGACTAGCCAGC 1101573 37 100.0 33 ACTAGCCAGC ..................................... CGTTACTTCCCAATGTATTTGCACTAGAGGAAG 1101643 37 100.0 34 CTAGAGGAAG ..................................... TGAGATGCAATTCGCTTCTCAACTTTATTCCAAG 1101714 37 100.0 35 TTATTCCAAG ..................................... TCACAAGTTTATTTCTGCTATTAGCTACATTGATG 1101786 37 100.0 34 TACATTGATG ..................................... TGGAGCGTAAGCAAAAAGCAGCACGTAAGCGGGC 1101857 37 100.0 34 GTAAGCGGGC ..................................... GATTTTTTGGACAATCCCAGTTTGGAAATGTGCC 1101928 37 100.0 34 GAAATGTGCC ..................................... AGCTCCTTTAATAAAAGCTGAACCTATATCACTT 1101999 37 100.0 43 TATATCACTT ..................................... TTAGCTGACTGTAATCTAGCTAAGTAATCAGCAATCCCTACAG 1102079 37 100.0 35 ATCCCTACAG ..................................... AGAAAATGTCTGTTACATAGGAGACGCTAAATACA 1102151 37 100.0 35 GCTAAATACA ..................................... TCGGGACGGCGATCGCTAACAACTCTTTTTAAATC 1102223 37 100.0 38 TTTTTAAATC ..................................... AGCCGGCTTTAGTTCATACTCCACGCTTAACGGCGGAT 1102298 37 100.0 34 AACGGCGGAT ..................................... CTCCCACGCTTCAGCCATTCCGGCTAGTTGATAT 1102369 37 100.0 41 TAGTTGATAT ..................................... GATGTGGTTGGCATTTGGAGCTAATCTAAAAATTACCTCCT 1102447 37 100.0 37 ATTACCTCCT ..................................... CCTGGAGTTATAGCTCCGATGTTTACGTTGTTCAAAC 1102521 37 100.0 34 TTGTTCAAAC ..................................... ATTGCTACTGGTTCTGGAAGCGAAATATCTAAAG 1102592 37 100.0 35 ATATCTAAAG ..................................... TTGCTAATTTTTTTAGTAATTGGAATAATAGTAAA 1102664 37 100.0 35 TAATAGTAAA ..................................... ATCTTCGGGTGAGGAATACTTATCATAGTTCCCTG 1102736 37 100.0 32 TAGTTCCCTG ..................................... CATCTATAGCGATCGCCACCCAGCGCAGAATA 1102805 37 100.0 33 GCGCAGAATA ..................................... TTGAGTGCCGCCAGCAAAAACTTCGGTCAGGAT 1102875 37 97.3 40 CGGTCAGGAT ......................C.............. TACTTGCCACCATCCTGAATAAGACACTCCAGATAACCAG 1102952 37 100.0 34 AGATAACCAG ..................................... TACATAAACATCAACAAACAAAAACTAGCCGAGT 1103023 37 100.0 38 CTAGCCGAGT ..................................... ATCTCTTCATCTGATATATTCAAGTTGAAGTTTAGGAT 1103098 37 100.0 AGTTTAGGAT ..................................... AACTCTTCAT ========== ====== ====== ====== ========== ===================================== 23 37 35 GTTACAATTCACCCAAATCCCTATCAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:59.46%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.50,-7.40] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [382,16] Score: 0.18/0.18 # # Final direction: F [5.09,0 Confidence: HIGH] >NC_019757 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3829839 37 100.0 34 GACCCCAGCG ..................................... GAATACTTGGGCTTTCCTACAACAACAGTAGTGG 3829910 37 100.0 34 ACAGTAGTGG ..................................... GTGGGATCTTTATCAACTTCAGACGCAAGCTGGA 3829981 37 100.0 40 GCAAGCTGGA ..................................... ACAAAGAAAATACGAAACCGCAGAAAAGATACTTGCGATC 3830058 37 100.0 33 ACTTGCGATC ..................................... GCATACAGAATTACTTGTTCGCAATTCCTGCAA 3830128 37 100.0 34 ATTCCTGCAA ..................................... GCCGTGAACCATAAATTAAAAACCCTCGATGTAT 3830199 37 100.0 33 CTCGATGTAT ..................................... CTTTAAAGTCTGTGACAATTCCCGCCGCGTTGT 3830269 37 100.0 34 GCCGCGTTGT ..................................... GCGAGTGCTGCTAGTGAATTCCTTGCCCCGTTGG 3830340 37 100.0 33 GCCCCGTTGG ..................................... GAAAGCCATAATAAGTATATAGTCACGGATCTG 3830410 37 100.0 38 CACGGATCTG ..................................... TTACCCTAATGCTAATGTAGCTCCTTTAGATTATTTAA 3830485 37 100.0 33 GATTATTTAA ..................................... TTTTCTCCTATTTCTACAAGAGTTGAACTACCA 3830555 37 100.0 35 TGAACTACCA ..................................... GTAAAGAGATACGGCATCGATAATGTAGTACTCCT 3830627 37 100.0 39 TAGTACTCCT ..................................... CTTGACTACTGCTATGTGATTGTAAAACCCTCCAATTCC 3830703 37 100.0 32 CTCCAATTCC ..................................... TAAAACTTGGTCTGCAAGCAAAGTACCCGCAG 3830772 37 100.0 33 GTACCCGCAG ..................................... GCAATGATTCTTGCAGGAGGTGGGATGAGTCAT 3830842 37 100.0 33 GATGAGTCAT ..................................... CTTTGTGACAAGCTAGCTCCTATTCTTCATTGG 3830912 37 100.0 33 TCTTCATTGG ..................................... CAATAACGGCTATAGTGAAAAGCCAAATGTGCA 3830982 37 100.0 34 CAAATGTGCA ..................................... GAAATGTCTACCATCCAAGCGAACCACCCATAAA 3831053 37 100.0 33 CACCCATAAA ..................................... TTTTTCATGGATTGAAGAAAAAATTACTCGTTG 3831123 37 100.0 36 TTACTCGTTG ..................................... AAAAGCCAGAATCATTGGTAAATCCTGGAGAATCAA 3831196 37 100.0 34 GGAGAATCAA ..................................... TTTCTAGTGGGAAATAAGAGAGTAGTTTGGATAA 3831267 37 100.0 38 GTTTGGATAA ..................................... TTCTAGGCTAGGTAGTTCTAGCAGAGTACCCAAAGCCA 3831342 37 100.0 32 CCCAAAGCCA ..................................... TTTATTTGTCAATGAAGCGGCAAGCCTTGCTA 3831411 37 100.0 38 AGCCTTGCTA ..................................... AGCCGCTCCCATTTCTAAATTATAAGCAGTGATCCCCT 3831486 37 100.0 37 GTGATCCCCT ..................................... TTTAGAACAACTTGTAGAAGATGGAAAGTTGCTATTT 3831560 37 100.0 33 GTTGCTATTT ..................................... TTGCAGGGCACGGGCATAAATTACGTTAGTCCC 3831630 37 100.0 35 CGTTAGTCCC ..................................... GTAAACGAGATTTTAAATAGATTTCCTATTGCACT 3831702 37 100.0 32 CTATTGCACT ..................................... AGCCCAGTTGGACGCAAAGAAGAGATAGTTTG 3831771 37 100.0 35 AGATAGTTTG ..................................... AAATCATAAATATAAATTGGGAAATGCAAGTGCGA 3831843 37 100.0 39 GCAAGTGCGA ..................................... TATATCCCTGACCTGCCACCTGCACGAAGGTAGACTTGC 3831919 37 100.0 35 GTAGACTTGC ..................................... TTAGAATTAATTCCTCAGCATGAAGGAAAGAGCAC 3831991 37 100.0 41 GAAAGAGCAC ..................................... GCTGTTGCTGTCTATTCGTCCCGCCAATGCGATTGCCACAG 3832069 37 100.0 35 ATTGCCACAG ..................................... TCTGATCCCAATCCTTTATCTATGCGTATCAGTTT 3832141 37 100.0 34 GTATCAGTTT ..................................... TTGAGTTACTTACAAGATAAACTAGATTTATACT 3832212 37 100.0 35 GATTTATACT ..................................... GCATATATGATGGTGAATTTCCAAATCTGCCAAGG 3832284 37 100.0 TCTGCCAAGG ..................................... TTCCTACATG ========== ====== ====== ====== ========== ===================================== 35 37 34 GTTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.50,-7.40] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [51.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [318,490] Score: 0/0.18 # # Final direction: F [4.5,0.27 Confidence: HIGH] >NC_019757 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 4707333 36 97.2 43 AGTATGAGGG ...G................................ CAGATTGAAAGGTTGCTTCCAACTCTTCTTTCTGTAGCCACGC 4707412 36 94.4 35 GTAGCCACGC ...G..........T..................... CTCGCATCTACCGGTTCGTCCGGGGATATTTGCAG 4707483 36 94.4 36 ATATTTGCAG ...G..........T..................... TTGCAACAATATGTACCTTACTGGGTACGTTAACAA 4707555 36 94.4 37 ACGTTAACAA ...G..........T..................... GAGATACGACGAAAGCAGAAGGTCGCCCTTCGTATTC 4707628 36 94.4 48 CTTCGTATTC ...G..........T..................... CGACTCTAGCTCAAGAGAGCCTTCATCGTTGCAAACTCATTGTGCAGC 4707712 36 97.2 33 ATTGTGCAGC ..............C..................... TTTGGCTCTCTAACGGACGTGTCTATTCGGAAT 4707781 36 100.0 38 TATTCGGAAT .................................... TTACCCGATTATCTTCTGCCTGCAAAACTCGTTGAATA 4707855 36 100.0 36 TCGTTGAATA .................................... CATACAGACGGGAATTGGTTCCCGACGTGGTGATCA 4707927 36 100.0 45 GTGGTGATCA .................................... TTGCCATTAGGCTTGTCGTAATTGGGTGATTTATGCACCTCTTTT 4708008 36 97.2 39 CACCTCTTTT ...................................A ATCGTTGGAATTGCGATTTTTGCCGTATCACCTAGAACT 4708083 36 100.0 36 ACCTAGAACT .................................... GTATATGTGTCATCGGCTTCAAGATGAACAGTGAGA 4708155 36 100.0 35 AACAGTGAGA .................................... AACGGATATGCTTCTTTCAAAGCAGGATTAAGCTG 4708226 36 100.0 41 GATTAAGCTG .................................... TTGACTTCTCCGCCAATCAATCTTCCATAAAGGGCATAGGC 4708303 36 97.2 36 GGGCATAGGC ..............T..................... ATTTCTATGACAGGGATATCGATGCCACGTAACACA 4708375 36 97.2 44 ACGTAACACA ..............T..................... GAGGATGCCATTGACAGCATGCCCAGCCCATCCCAGCAGGAGGA 4708455 36 97.2 AGCAGGAGGA ..............T..................... ACCCAGAAATTATCCCAAAGCATAATCACAGGGTTTATACC ========== ====== ====== ====== ========== ==================================== 16 36 38 GTCACTTCTATTCTGAGAAGTGGAATTAATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.89%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [45.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [356,147] Score: 0.18/0.18 # # Final direction: F [0.55,0.27 Confidence: MEDIUM] >NC_019757 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 4718802 36 97.2 38 TGTAGGAGGG ..............T..................... ACTTCGCTTGGAAGCAGGTCGATTGCGTGCAAGACATA 4718876 36 100.0 39 GCAAGACATA .................................... CAGCTACGAACTTTGTAACCCTTGGATAGTAATTCTGCT 4718951 36 100.0 38 TAATTCTGCT .................................... TTTCTAGCTGTTAATACTAAAGCTGTTTGGTCTTCAAT 4719025 36 100.0 39 GGTCTTCAAT .................................... GCCCAAGGTGCAGCAGGGGTAGGGGGGTTTACATAGATA 4719100 36 100.0 35 TACATAGATA .................................... AAGCTTGCAACGTCAGAAACGCTCAACGCCAGCAA 4719171 36 97.2 34 ACGCCAGCAA .........G.......................... CCTGCACATGCCGCGCGCGCTGGCCGCCTTCGAG 4719241 36 100.0 37 CGCCTTCGAG .................................... TTCTATCTGATTGGCTTCCTTGAGCGCTTCTATCGCG 4719314 36 100.0 35 TTCTATCGCG .................................... GCCAATGGTATTTCTGCCATTCATTCATGTCAGAC 4719385 36 100.0 CATGTCAGAC .................................... TCGTGGAGGA ========== ====== ====== ====== ========== ==================================== 9 36 36 GTCACTTCTATTCTGAGAAGTGGAATTAATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.89%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [43.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [203,717] Score: 0.18/0.18 # # Final direction: R [0.37,0.86 Confidence: MEDIUM] >NC_019757 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 4058587 37 97.3 32 TTTTCTTAAC .........................A........... ATCGCGGATGTTTGGAGTTTGGCGGCTTGGTT 4058656 37 97.3 34 CGGCTTGGTT .........................A........... AGCACTACTGCCTACGCCAATGTTTCAATTGGTA 4058727 37 97.3 34 TCAATTGGTA .........................A........... CTGGAAATAATCTCAATTTTGCAGCAGCTTCTGG 4058798 37 100.0 34 CAGCTTCTGG ..................................... TGGTATGATTTAATAGCTGAAGTGGCGGAGCGGT 4058869 37 100.0 32 GCGGAGCGGT ..................................... TCACCACTTACATAGATAGATGTTTTTAAAGT 4058938 37 100.0 34 TTTTTAAAGT ..................................... TTATCAGCACTGCACTGTCTTGGTTATTCATCAG 4059009 37 100.0 38 TATTCATCAG ..................................... GCTACTCGCAGCTTCACAATGGACTCTTTAAGATTTTC 4059084 37 100.0 37 TAAGATTTTC ..................................... TATTCGCCAGTAGCGCAGGTAGGAACAGAGCAAGGTA 4059158 37 100.0 33 GAGCAAGGTA ..................................... GTGGTAATGTGCAGGTTGTTGCAGCTACTCCAG 4059228 37 100.0 34 GCTACTCCAG ..................................... TTGCTCAATTCATCTGGCAAGGTTAATAAGTTTG 4059299 37 100.0 35 AATAAGTTTG ..................................... TTCGCCTCCAGCGTCCACCATCATTCATCTTTGAA 4059371 37 100.0 35 CATCTTTGAA ..................................... TACCAGAAGTGCAAGCGATTTGGCGGGAGCGGCTT 4059443 37 100.0 34 GGAGCGGCTT ..................................... TGGGCAACCAATAAGCTTAAAAATACTGTCTCAA 4059514 37 100.0 35 ACTGTCTCAA ..................................... TTAACTGTTGATTTTTGCGCTAATTAAGAGAAGCT 4059586 37 100.0 36 AAGAGAAGCT ..................................... TTTGTCGTTCTAAATCTGTTAGATTTAGTAAATTTA 4059659 37 100.0 34 AGTAAATTTA ..................................... CTATAATTCTTACGCAGTAAGGTTTACACAGTAA 4059730 37 100.0 35 TACACAGTAA ..................................... TACAAGACGTAGGCTACGGCTTACTGCAAGGTAGT 4059802 37 100.0 34 GCAAGGTAGT ..................................... GAAATTTTTACGCTACACCCGACACACCACAGGA 4059873 37 100.0 35 CACCACAGGA ..................................... TCGTCTATTAGTGCAATAAAATATCCCTTAATAGG 4059945 37 100.0 33 CCTTAATAGG ..................................... GCCAAGTACAGTAATTATCTTTGCGGCGTTCTC 4060015 37 100.0 35 CGGCGTTCTC ..................................... TGCTATTACCAAAGTGGAAGATTCTACTGTTGTTG 4060087 37 100.0 32 ACTGTTGTTG ..................................... GCTTTATATGTCTACTTCCCTAGAAACTTTGC 4060156 37 100.0 35 GAAACTTTGC ..................................... GGTGTATATGAGAAGCGCCACATCTGGGTGGATGC 4060228 37 100.0 33 GGGTGGATGC ..................................... CTGTGCGAAAAAGAAGTATGTATATTGTGCCCA 4060298 37 100.0 35 ATTGTGCCCA ..................................... TTAAAAAATCCTATGCTGAGAATAATATCAGTTTA 4060370 37 100.0 37 TATCAGTTTA ..................................... CTTTTTCCTCTGAGTTTAGCCGTGCATATACAAGGTT 4060444 37 100.0 34 ATACAAGGTT ..................................... TGAAAATCCAGAGAAGCTGAAGGCGGCTTACTCC 4060515 37 100.0 GGCTTACTCC ..................................... TGCGGGGGTC ========== ====== ====== ====== ========== ===================================== 28 37 34 GTTTCAATCCCTAATAGGGATTTTGGTGAATTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.16%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.40,-7.50] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [73,834] Score: 0.18/0.18 # # Final direction: R [0.27,4.68 Confidence: HIGH] >NC_019757 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 5966534 37 100.0 35 GACCCCAGCG ..................................... GGTAACCGAGAAACCAGCTTTCTTTAATTTAGCTT 5966606 37 100.0 34 AATTTAGCTT ..................................... GAAAAATCCAGCAAAGCCAAGCATGGAGACTGGA 5966677 37 100.0 35 GGAGACTGGA ..................................... TGATGTAATTAGCCATTTAGTTAACAATATGCCTG 5966749 37 100.0 34 AATATGCCTG ..................................... TGTATCTCAATAAAGCTTCCCGCCAACCAAACCA 5966820 37 100.0 34 AACCAAACCA ..................................... CAATCAGCATCAATTATGAGACTGATGAAGACGA 5966891 37 100.0 35 ATGAAGACGA ..................................... AATGGTAACAGTGCTATTGATAACCGCTTAAACCG 5966963 37 100.0 34 GCTTAAACCG ..................................... TCTAGGCGTAAGTGACAAACAACGGGATTTTATC 5967034 37 100.0 35 GGATTTTATC ..................................... TTAGGATTCCCAGGATCTGCTTCGATTATAAGATT 5967106 37 100.0 39 TTATAAGATT ..................................... GCAACGCGCCTAGCGATGCGGCAGACTGCATTGTTCTTT 5967182 37 100.0 37 ATTGTTCTTT ..................................... GTGGCAATTGGAGAGATACAACGGATTTGGGCATCGC 5967256 37 100.0 32 TGGGCATCGC ..................................... TTTGCAGTATTCTTCAATGACAACCCTAACTT 5967325 37 100.0 36 ACCCTAACTT ..................................... CACAGACTTGTTCTATGCCAACAAGAAAGCAGATAT 5967398 37 100.0 35 AAGCAGATAT ..................................... GTGGCTAAGAACAACCCTAGCAAGTTAGGTGAGCC 5967470 37 100.0 36 TAGGTGAGCC ..................................... TTAAACTCTACTCTTCCAGCCTATGAAAATGATTTA 5967543 37 100.0 35 AAATGATTTA ..................................... CTGAATAAATAACAACTAAGGAGACATCCCAATGG 5967615 37 100.0 38 ATCCCAATGG ..................................... TCTTCATTTAAAGTAGCAAGATTATTTTTGATGCAATC 5967690 37 100.0 34 TGATGCAATC ..................................... TCAGAATTATTTTCAGCCCAGCTAGTAAAAACTG 5967761 37 100.0 35 GTAAAAACTG ..................................... CTTGCAGTTAAACGCGACTACAGCGCCTGGGGGAA 5967833 37 100.0 40 CCTGGGGGAA ..................................... CTCTTACTCTAGCAGACCTAGACATTACAGAAGGAGAAGG 5967910 37 100.0 39 AAGGAGAAGG ..................................... GCGTATGAAATTGCTAGATCACTGGACGAAGCAGAAAGT 5967986 37 100.0 30 AGCAGAAAGT ..................................... TTGCCAGTGGAGCCAAGGCAGCAGACACAG 5968053 37 100.0 38 GCAGACACAG ..................................... TATGACGTACCCGTGGAGGTTGATTTACAAATGTGCGA 5968128 37 100.0 35 AAATGTGCGA ..................................... CTTTCCATAGAAGCGCGATCGCCATCTGCAAACCC 5968200 37 100.0 39 CTGCAAACCC ..................................... GCAACTGATTTTTTGATAGTGCTAAAAGTTCTTTTCAAG 5968276 37 100.0 34 TCTTTTCAAG ..................................... TAGACGAAACCCAGGATATAAAAAGGATTGTGTG 5968347 37 100.0 36 GGATTGTGTG ..................................... ATCGGAAGCGGGTAACTCGTAACATTTCGCAAGAAG 5968420 37 100.0 33 TCGCAAGAAG ..................................... GACTTAATCCCCGAAAGCACCTTTGACCAATTT 5968490 37 100.0 TGACCAATTT ..................................... TCAGCGGGAA ========== ====== ====== ====== ========== ===================================== 28 37 35 GTTGCAATTCATCTAAATCCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.50,-7.40] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [267,556] Score: 0.18/0.18 # # Final direction: F [4.5,0.18 Confidence: HIGH] >NC_019757 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================================== ====== 6628933 38 100.0 38 AAGGTGAACT ...................................... GCAGTGGTATTTCCCAGTGCACCCGAACTCGCACCAAA 6629009 38 92.1 34 TCGCACCAAA .............G......................AA ATACGAAAGAGGATCGTTTCTAAATTTCTCTCTT 6629081 38 100.0 TTTCTCTCTT ...................................... CTTCACTAACCCCTGGGAGGCGACTACATTTTGGGTTGC ========== ====== ====== ====== ========== ====================================== 3 38 36 CTTTACATAACCACTTCCCCTAACGGGGATGGAAACTT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.26%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-11.20,-11.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [475,284] Score: 0/0.18 # # Final direction: F [0.41,0.37 Confidence: LOW] >NC_019765 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 32009 37 100.0 35 NNNNNNNNNN ..................................... TTTTATCTTTTCTCAATCAATTGATAAAGGTCGTA 32081 37 100.0 35 NNNNNNNNNN ..................................... AATGAGTTTAAAGATTTGCTTATGGCGCAAGTTTG 32153 37 100.0 39 NNNNNNNNNN ..................................... ATAGATGGAAATTCCTCTTTCTTCGGAAAAAATTATCGA 32229 37 100.0 36 NNNNNNNNNN ..................................... ATTGTTTCTCAGCAAACGTAATTGGTTGCCAGTCAT 32302 37 100.0 36 NNNNNNNNNN ..................................... GTGCTACGTTCGTAAACTTGCGTTTCAAAAGTCCCT 32375 37 100.0 35 NNNNNNNNNN ..................................... GTGAGGGAATTGATATGTTTGCTCGTAAAGGTGAT 32447 37 100.0 36 NNNNNNNNNN ..................................... CAATCCCCCCTTCGTCGAGGAGCAATACAGAGTTAG 32520 37 100.0 35 NNNNNNNNNN ..................................... TTTTGATAAGGTATTATGTTATTGAGGATAAATAA 32592 37 100.0 33 NNNNNNNNNN ..........AAACGG.TGTCGCAGG.ACA.GGC... TATTCTGGGTATTATGTTATTGAGGATAAATAA 32662 37 100.0 38 NNNNNNNNNN ..................................... AGTTCGTCGTGCAACTAAGGTGCAGAAATAATGGAATT 32737 37 100.0 34 NNNNNNNNNN ..................................... CCATTAGCAGCAAACCAATTCAAACCACGAAGAC 32808 37 100.0 40 NNNNNNNNNN ..................................... GTTTTAAGCTCTTCAATAGTTTCATCAATTTGCTCTTTAT 32885 37 100.0 37 NNNNNNNNNN ..................................... ATTTATAACGATTGTTTGCAATATGGCGTAGGTAAAG 32959 37 100.0 40 NNNNNNNNNN ..................................... ACTTAAACGAATCCGACCCCGTAAAAGTTGACCTGTCCTT 33036 37 100.0 36 NNNNNNNNNN ..................................... AAATTTGGCGATCGCTCGATAAAAAGTAGCTGAAGA 33109 37 100.0 35 NNNNNNNNNN ..................................... TTGATGGAATGGTTCGGAGTCGAATTTTTTCTGAT 33181 37 100.0 34 NNNNNNNNNN ..................................... AAATTTGCCCGTGTTCGAGCGTCTGTCCAATCCA 33252 37 100.0 34 NNNNNNNNNN ..................................... ATAGTTCTCGCTTCTGCTTCGATTTTTTGAATTT 33323 37 100.0 40 NNNNNNNNNN ..................................... ACTGCTGGTCGTATTGCTTTCCATAATTGGTCACAGGCTA 33400 37 100.0 36 NNNNNNNNNN ..................................... TAATAAAAATCTAGATCAAGATGATTTAAATGTACT 33473 37 100.0 42 NNNNNNNNNN ..................................... GTAGGTAGCAAGATTTGATCGACTTCGGGGTTGGCGTTGATA 33552 37 100.0 35 NNNNNNNNNN ..................................... TTAGAGAGAATTTAGATTACAATCGCAATCTTTTA 33624 37 100.0 33 NNNNNNNNNN ..................................... TATCTTCCGTCGATCGCGATTTGAGTTCTTTTG 33694 37 100.0 37 NNNNNNNNNN ..................................... ATCGGCTGCATCTAATGCAGGTGCAGCACTCCTGGCT 33768 37 100.0 35 NNNNNNNNNN ..................................... CGATTCAAAAGTAAATACCTCAGAATACTTTATTT 33840 37 100.0 37 NNNNNNNNNN ..................................... GTAAGTACTGAGCGAACATTTTACTTAGTTCTTCTTT 33914 37 100.0 34 NNNNNNNNNN ..................................... TTCAAGATTTATTTGAAGATGTTACTGATTCTAA 33985 37 100.0 34 NNNNNNNNNN ..................................... AGTGGAGAATGAAACTAAAGTAGCTTGGTATGCT 34056 37 100.0 37 NNNNNNNNNN ..................................... GTAGTACATACTCAGTAGTACCATCATCGGCGGTATA 34130 37 100.0 35 NNNNNNNNNN ..................................... TTAATAACTGGAAAAATATTAAAGGGTTTAACTAC 34202 37 100.0 35 NNNNNNNNNN ..................................... TTGAAAATATATATTTTCTCCTTCTTCCCAATTTT 34274 37 100.0 35 NNNNNNNNNN ..................................... CTATCCCAGTTATCTTTTTGATCAAACCAATCAAT 34346 37 100.0 38 NNNNNNNNNN ..................................... CCAGAAAAATAAGCTAGATTTGCTATTGTATATTTAGT 34421 37 100.0 35 NNNNNNNNNN ..................................... CATTTGAGAATTAGAGAGAGCAAGAGCAATAGATC 34493 37 100.0 35 NNNNNNNNNN ..................................... TGGAAACTACAGCACCAGTAGAACTACAAGCTTCT 34565 37 100.0 41 NNNNNNNNNN ..................................... TAGACAGATCGATTAAATTTTGAACTGTTTTAATTGCGGCC 34643 37 100.0 37 NNNNNNNNNN ..................................... TCAAGTCTTACCACAGCAGCTTGAGCCGTATCCGCAG 34717 37 100.0 38 NNNNNNNNNN ..................................... ACAAAGTAGTTGATTATTTAGAAATTGATTTTACTTTT 34792 37 100.0 33 NNNNNNNNNN ..................................... GATTTTTTCAATGGCTGGCTGTAGCTTTTTGAG 34862 37 100.0 36 NNNNNNNNNN ..................................... TATTTCATTCAATGGGCGCACTACTCCACCAGAAAT 34935 37 100.0 36 NNNNNNNNNN ..................................... ACATGGTAATTCAACCGTTGCCGTATCATTGGAAGT 35008 37 100.0 37 NNNNNNNNNN ..................................... TAGCTGAAACTTTAGCAGAATTATGGGGAGCAATTTT 35082 37 100.0 38 NNNNNNNNNN ..................................... TAATCAAGTTGTAAATAAAGATTAGTTGTAGTTCCCAA 35157 37 100.0 1 NNNNNNNNNN ..................................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 44 37 36 GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.68%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-4.90,-4.90] Score: 0/0.37 # Array degeneracy analysis suggestion: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [84,235] Score: 0.18/0.18 # # Final direction: R [0.27,5.09 Confidence: HIGH] >NC_019757 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 6781582 37 100.0 38 GCGAGCACCT ..................................... AAGGTATTCACTTCAGCATTGGTGATTTACCCGTGAGC 6781657 37 100.0 36 ACCCGTGAGC ..................................... CAAAAAACCACCCTCAGATGGTCGCAGATTGACCAA 6781730 37 100.0 36 GATTGACCAA ..................................... CTGTTCTGTGGGAAACCGATGGAAGTAGGCTATCTC 6781803 37 100.0 36 AGGCTATCTC ..................................... GCACAGAAGAACTTTGCAGCGATTAAGCTCTACTTC 6781876 37 100.0 38 GCTCTACTTC ..................................... TTACTTCCTTGCCTCTATGTTTACATCTTACTATGGTT 6781951 37 100.0 35 TACTATGGTT ..................................... GATGTAGTGCTTTCTGAGGAAGATGATTTTATAGG 6782023 37 100.0 37 ATTTTATAGG ..................................... TTAAAGAAAATGTAGAAGGTGCGCTAGCCACTGCAAT 6782097 37 100.0 CCACTGCAAT ..................................... GGCTGGGAT ========== ====== ====== ====== ========== ===================================== 8 37 36 GTTTCAATCCCTAATAGGGATTTTGATGTTTTGCAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.40,-7.50] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [61,684] Score: 0.18/0.18 # # Final direction: R [0.27,4.68 Confidence: HIGH] >NC_019770 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1760747 36 100.0 30 NNNNNNNNNN ..GA.A..TTGT..T..............A...... AGGGGAGAAAAAGCCAAATCAAAAAAGTTT 1760813 36 100.0 30 NNNNNNNNNN .................................... GAATTGATAATTGAAGCCTTAACAAGTAAT 1760879 36 100.0 30 NNNNNNNNNN .......C............................ CTTTTGATTTTGGTGCTAATGCATCAAAAT 1760945 36 100.0 30 NNNNNNNNNN .................................... ATGAACTAAATGTTTCAGATTCTCAAATAA 1761011 36 100.0 30 NNNNNNNNNN .................................... TCTGGTAAATTCTTAATGTCTGCATAGGTA 1761077 36 100.0 30 NNNNNNNNNN .................................... TAGCCTAAAATTAATACATCATTTTCGATA 1761143 36 100.0 30 NNNNNNNNNN .................................... ATACCATCCGCAGTTGGTGTAAGTTCGGTT 1761209 36 100.0 30 NNNNNNNNNN .................................... ATGACTATGCGAAAGTTAATCGTTTGTTAC 1761275 36 100.0 30 NNNNNNNNNN .................................... AGAAAGTGGGGAATGCGTAATGCCGTACTT 1761341 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 10 36 30 GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [408,160] Score: 0.18/0.18 # # Final direction: R [0.18,0.41 Confidence: MEDIUM] >NC_019757 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 6914375 37 100.0 38 AGAGGGCGGA ..................................... GAATGATTCTAGAAGGGAATACGTCGCCGTACTCTGCA 6914450 37 100.0 38 GTACTCTGCA ..................................... GCCTCAATCCGCCTTCTAGCCGTTTGAGGCGATCGCGC 6914525 37 100.0 39 GCGATCGCGC ..................................... TTTGGAGCAATTGTAGCGATCGCGGATTTAACAGATTGC 6914601 37 100.0 34 AACAGATTGC ..................................... TTATTAGTGAGGATGAAAACGACTGGGCGATCGC 6914672 37 100.0 37 GGGCGATCGC ..................................... ATTAATAGCGCCTACGGTGGCAGGATTTATCGTTACG 6914746 37 100.0 35 TATCGTTACG ..................................... CTAAAGCAGCTTTTTTACCTTTGGATACAGCATAA 6914818 37 100.0 37 TACAGCATAA ..................................... AGATTAACCCTAGTAGATTGGTCGAGGCGCAGGCGAT 6914892 37 100.0 34 CGCAGGCGAT ..................................... AATCTATAGCTACTGCGAAGGCTGAGAATATGGA 6914963 37 100.0 38 AGAATATGGA ..................................... ATTCTGATTCCACTTCAATAGCTAGTGCTGGCTTGGCC 6915038 37 100.0 39 TGGCTTGGCC ..................................... AATATTGGGGAAAAAGTTAGGGACTTAGTCAACTTAGAA 6915114 37 100.0 38 CAACTTAGAA ..................................... CAGCAGAGAGTCTCATCGGGTGCTACTGAGCTTAAAGG 6915189 37 100.0 34 AGCTTAAAGG ..................................... TTTAGCTATACGGTCAAGGCATATCTGATGATAG 6915260 37 100.0 36 CTGATGATAG ..................................... TCCTTTTTTGGTCAGCAGTCGCCCCCTGCCCATACT 6915333 37 100.0 38 TGCCCATACT ..................................... AGCCATCATCTTTCACAAGGTGAATGGGATTGCTGGTG 6915408 37 97.3 42 ATTGCTGGTG ..............C...................... ATTTTATATGTTGTTTAATAGCAGCATACAAAAAAGCTTTAG 6915487 37 97.3 35 AAAGCTTTAG ..............C...................... ATGTAAATCTAGAGTAGGGTGCGATACCCACCCAC 6915559 37 97.3 36 ACCCACCCAC ..............C...................... TAATCTGACTGCCACTCTGGGCAGACTTCATCAAGT 6915632 37 100.0 TTCATCAAGT ..................................... AGAAATTTAC ========== ====== ====== ====== ========== ===================================== 18 37 36 CTTTCCGCTAACTAATTCCCCGCAAGGGGACTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [10,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-9.10,-8.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [299,597] Score: 0/0.18 # # Final direction: F [0.74,0.27 Confidence: MEDIUM] >NC_019771 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 4752371 37 100.0 42 NNNNNNNNNN ....T...................G....G....... TGACGCTGGAGATAAGGCAGTTTACAAAGCTCAAACAGGAGG 4752450 37 100.0 36 NNNNNNNNNN ......A.............................. TAAAAGCCTATAAGCGTGTATCAATACACTGCAATA 4752523 37 100.0 39 NNNNNNNNNN ..................................... ATAGAATATGCCAAACCCTTGGGGAATCCCTGAAATAGT 4752599 37 100.0 37 NNNNNNNNNN ..................................... TGGTTGTCTCCAGCCGGACACCTCCCACCTATACAAT 4752673 37 100.0 38 NNNNNNNNNN ..................................... CTGCTATTTATTTCTGAATCGGCTGAGGTTGAAGATGC 4752748 37 100.0 36 NNNNNNNNNN ..................................... ACCTGACGCTTTCCTAAGTAATCCACCTCAATCCCT 4752821 37 100.0 36 NNNNNNNNNN ..................................... CGAAAATCTTGTCAATCCACTCAAAAGGAATCCAAT 4752894 37 100.0 35 NNNNNNNNNN ..................................... TGTCGCCACTTGTCCTGAACCCATGCAGCAGAAAA 4752966 37 100.0 41 NNNNNNNNNN ..................................... CTATCATGCAAAATAATTTTAGATTTCTTGCTTGTAGCTTT 4753044 37 100.0 38 NNNNNNNNNN ..................................... CTCAAAATAATCTCCATATTCTTGTTTGAAGTCTTCAA 4753119 37 100.0 38 NNNNNNNNNN ..................................... TTGACTTGCTTCTCGGATTGGTTAGCAATTTGACTTTT 4753194 37 100.0 36 NNNNNNNNNN ..................................... ATCCCTGGAACTGATTCTTCCTGATATTGCCATCCG 4753267 37 100.0 38 NNNNNNNNNN ..................................... TGAGTGGATAGTTTCTATAAAAACAATCGGGGAAAGAA 4753342 37 100.0 39 NNNNNNNNNN ..................................... TTGGACGACGGATTTTAACCTCGTCGTTAACTTCAAATG 4753418 37 100.0 31 NNNNNNNNNN ..................................... CGTGGGGATAATCGGTTGGTTGTCGGGAATT 4753486 37 100.0 37 NNNNNNNNNN ..................................... TTTATATTCTGACCGTGCTTTTCGGTTCTTACGTAGT 4753560 37 100.0 40 NNNNNNNNNN ..................................... CAGGGATGCAATATTGCATCCCTCGCACAACCTCACAAAA 4753637 37 100.0 41 NNNNNNNNNN ..................................... TCCGCAATATAAGGGTATCTCTCTAAAAAATGAAGGTGGAC 4753715 37 100.0 40 NNNNNNNNNN ..................................... CAGGCTATCGGCGGGTGTGGCCTTTTCATCCTGAGTGGTT 4753792 37 100.0 36 NNNNNNNNNN ..................................... GACATTTGGGCTATCTGCGGCTGACTTAGGAATAGA 4753865 37 100.0 34 NNNNNNNNNN ..................................... TATCATGTCACCACCTCGCCAGCAGTAATCCTAT 4753936 37 100.0 41 NNNNNNNNNN ..................................... CTATCATGCAAAATAATTTTAGATTTCTTGCTTGTAGCTTT 4754014 37 100.0 41 NNNNNNNNNN ..................................... CAGGATTTAATTTTGTGCCATCGCTCAATTCCTTGGGAACA 4754092 37 100.0 37 NNNNNNNNNN ..................................... TAATAAGCAAGCGTGCTATCCTCGCTTACTAGCATCT 4754166 37 100.0 37 NNNNNNNNNN ..................................... TTTAAAGCCAATATAGACAGCAGTGTTGATATGTTTT 4754240 37 100.0 34 NNNNNNNNNN ..................................... TAGTTGTAGAGCGTAGTCAAATAGCTCCTCAATC 4754311 37 100.0 37 NNNNNNNNNN ..................................... CATTCTAGAAAGAAAGATTCCATAAGAGAAGAAAAAC 4754385 37 100.0 40 NNNNNNNNNN ..................................... CTTTCTCAATTCCGGATGCTGATTGGTTTGGGAAAGTTTT 4754462 37 100.0 36 NNNNNNNNNN ..................................... TAAACCTGTGACAATCGGGCTGGCAGGCTTTTGTGT 4754535 37 100.0 38 NNNNNNNNNN ..................................... CTCAAAATAATCTCCATATTCTTGTTTGAAGTCTTCAA 4754610 37 100.0 38 NNNNNNNNNN ..................................... TTTACAGGTGCGGTAGGTTCAGCAGGTGTTTGAGATGC 4754685 37 100.0 42 NNNNNNNNNN ..................................... TGGAAACATGGCGCACGGCGAAATCGTGATTATTGATGGAGA 4754764 37 100.0 35 NNNNNNNNNN ..................................... CCTAAATCAACTTTAATTCGGGTAATATTGTTCTC 4754836 37 100.0 34 NNNNNNNNNN ..................................... TTTTGGTTGTTCTTTCATTGTTGCGACGATACAG 4754907 37 100.0 38 NNNNNNNNNN ..................................... AACCTTAGAAGCGTCTGCCTTGATGCGAATAGCCCAAA 4754982 37 100.0 36 NNNNNNNNNN ..................................... AAGTTAAGGCATGGTGCGATCGCATCTATAATCTAG 4755055 37 100.0 38 NNNNNNNNNN ..................................... ATTTTGACCATGAAGCGGACACATATTTGAATAGTTAA 4755130 37 100.0 34 NNNNNNNNNN ..................................... AATCCCCTGCGCTGGCACACCTTTATTGTGTCCC 4755201 37 100.0 35 NNNNNNNNNN ..................................... ACTGTTGCTGCAACTGGCACGGGCTTCGGTGTTAA 4755273 37 100.0 39 NNNNNNNNNN ..................................... CCTAGACTATATGTAAACAAAGCTTACTATCCATTAGGA 4755349 37 100.0 43 NNNNNNNNNN ..................................... TTTCCCGCTCTTAAAGGACTTGCTGAGGAAGCCAAGAAATTAT 4755429 37 100.0 33 NNNNNNNNNN ..................................... CCCCATCAGGGATAGAGACTCCAAACCAATCGT 4755499 37 100.0 35 NNNNNNNNNN ..................................... TCAGAGGTTAATATGTCGATGTCGAACATTAATAA 4755571 37 100.0 40 NNNNNNNNNN ..................................... TACCTATACAAAGTACCATCAATCTGGTATAGATCTTGGG 4755648 37 100.0 35 NNNNNNNNNN ..................................... GCACAATTGCTTGGTCTTCCTAATAACATCATTGT 4755720 37 100.0 37 NNNNNNNNNN ..................................... AATTGGGAATACGGCTTATATAGAAATATGGAAAATA 4755794 37 100.0 37 NNNNNNNNNN ..................................... GCGACTTCTCTTAATCGCTTGCCTTGGCCACTGACAG 4755868 37 100.0 35 NNNNNNNNNN ..................................... GGTAATTATCCAAATCCTACAATTTTGAATAATGA 4755940 37 100.0 40 NNNNNNNNNN ..................................... ATGCCCTTCACCGAAGTAGCACTAGCTATGTAATATTGAC 4756017 37 100.0 36 NNNNNNNNNN ..................................... CCAAGAATTATTTCAAGAACAATTATGCGATCGCTG 4756090 37 100.0 38 NNNNNNNNNN ..................................... AATACTAGGTTATAGATGTCTGCATATTTTCTAACGCA 4756165 37 100.0 37 NNNNNNNNNN ..................................... TAGAGAAGCAGGTAATTGAACACATAAGGAAGATAGG 4756239 37 100.0 35 NNNNNNNNNN ..................................... ATATATAGTGTCATCGTGCTATTATTAAAAATAAT 4756311 37 100.0 38 NNNNNNNNNN ..................................... GAACGATTTGAGTCTTGGCGAGTACATCCAGAAGAAAA 4756386 37 100.0 39 NNNNNNNNNN ..................................... ATTGTCGATGGCATTGTCGTTCGTGATGGGTTCCGATCC 4756462 37 100.0 46 NNNNNNNNNN ..................................... GATGAATTAATCTATAATATAAGAAGTTAAGAAAATAGAGGGCAAA 4756545 37 100.0 36 NNNNNNNNNN ..................................... TCGGCTTTACCAACTTCTTCACTTCTTCCTGATCGT 4756618 37 100.0 38 NNNNNNNNNN ..................................... CGTGGGGGCTTCCTCTGTTTTAGCTGTTTCAACTTCAC 4756693 37 100.0 37 NNNNNNNNNN ..................................... TAGTAATTAAAACATGAGTGTCCCCCCAAAAGTTAAT 4756767 37 100.0 38 NNNNNNNNNN ..................................... ATTTTTTGTTTTCAAAAATACTTTAAACAAGGTATTGA 4756842 37 100.0 33 NNNNNNNNNN ..................................... CTGTGCGTCAGTTTGCATTGGATTTAGGGGTAG 4756912 37 100.0 39 NNNNNNNNNN ..................................... AAGGAATCCAAGCAAGCCGCCCACCTTCATCTCCAAATT 4756988 37 100.0 37 NNNNNNNNNN ..................................... AAATTCAGGTGTCCTAATAATCATATACATAGCGTTT 4757062 37 100.0 34 NNNNNNNNNN ..................................... TTTCATCTCTGCATCTCCTTTGCTTTGGTTGTTT 4757133 37 100.0 37 NNNNNNNNNN ..................................... CTGCTAATAATGACTTCACAGGCGTGATCGCTGGTAA 4757207 37 100.0 41 NNNNNNNNNN ..................................... CTAGAAATACCCCATTTGGTTTGTTGAAATCTCTGATTTAA 4757285 37 100.0 35 NNNNNNNNNN ..................................... TTTCCCAATGTTTGCAAAAGTTTGAGTTAATGCCC 4757357 37 100.0 38 NNNNNNNNNN ..................................... TGGATGAGTTTTAAAATTCTCGGATGTCCGTTTTCAAA 4757432 37 100.0 39 NNNNNNNNNN ..................................... GGGTGATGTAGATCCGACTGAGGATAATTTCTTAAAACT 4757508 37 100.0 39 NNNNNNNNNN ..................................... ATAAAATAGCGGTGATGTTTTAGATAGTCTCTTTAGGGG 4757584 37 100.0 40 NNNNNNNNNN ..................................... TTTGGGTAAATCCTTAGTAATGATTGCTGGGATTATGGAG 4757661 37 100.0 38 NNNNNNNNNN ..................................... CCTAAAGGTACAGTTACCGTCGAAACTGTAAAAGAAAT 4757736 37 100.0 36 NNNNNNNNNN ..................................... CAGGTGCATGAAGATTTACCCGTTGATTTCCACCTT 4757809 37 100.0 38 NNNNNNNNNN ..................................... CAGGGGTTGTAACCAGTTATCAGAAGCCCAGTCAGATA 4757884 37 100.0 35 NNNNNNNNNN ..................................... GGAAAACCACAAACAGATTGCAGCAGCGATCGCCA 4757956 37 100.0 40 NNNNNNNNNN ..................................... TTAAGAGAAAAAGAAGCAAAGAGCTTTATTGCTCAGTTGA 4758033 37 100.0 37 NNNNNNNNNN ..................................... TTTATTAAAAACAGTTGGAAAACCGCTGATATAACAG 4758107 37 100.0 36 NNNNNNNNNN ..................................... ATCTCAGGGGCATTTTGACAACAAACTTTCTACTTT 4758180 37 100.0 41 NNNNNNNNNN ..................................... CGGGATTGCTTACCCAAGCCGATATAGATTTATTTTCTATA 4758258 37 100.0 40 NNNNNNNNNN ..................................... AACTTTACAAAATCAATCTATTAGCAGCTTAGTAGATGCT 4758335 37 100.0 37 NNNNNNNNNN ..................................... CAGGAAGAAAGGAGAATCAATCCAAGATTCAGGAAGG 4758409 37 100.0 40 NNNNNNNNNN ..................................... ACGGCAAGTTAAATTTCATCCCCAAGAAATTAGTAGGGTT 4758486 37 100.0 34 NNNNNNNNNN ..................................... TTAGCTAACATCCTTTCTCAAAGTGTAGAATCCG 4758557 37 100.0 1 NNNNNNNNNN ..................................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 84 37 37 GTTTCAGTCCCCTTGCGGGGATTATTTATTTGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-10.20,-9.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [45,382] Score: 0.18/0.18 # # Final direction: F [0.64,0.59 Confidence: LOW] >NC_019771 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1761754 37 94.6 35 CTTAGTGCCA --................................... TTTCCGTACCCAGGAACAAGAGACAAACCTATCAC 1761826 37 100.0 37 AACCTATCAC ..................................... TGCTTATCACTAGCATTCCAGTTGAAATTCCAAAGAC 1761900 37 100.0 34 TTCCAAAGAC ..................................... AGATTTGGTGAGGAGGGTGGTCGCCTTGCTTGGA 1761971 37 100.0 37 CTTGCTTGGA ..................................... TCTTTCTTCCACATTTGCTGATGAGTTTAGTTTCAAT 1762045 37 100.0 37 TAGTTTCAAT ..................................... GGCTCAAATCAGTAGATATCCTCATATTTCTAGAAGA 1762119 37 100.0 33 TTCTAGAAGA ..................................... ACCCCCCCCGAACAAGTCGGGGGGGCTTCCTCC 1762189 37 100.0 36 GGCTTCCTCC ..................................... TTGAGCTTCCAGATAAATATGCTGATAAATTACGTG 1762262 37 100.0 40 AAATTACGTG ..................................... TCTCCCCTTAGAGCGTTTATTTCACTCATTATTTCATCGC 1762339 37 100.0 33 ATTTCATCGC ..................................... TAATAATCCTGGATAATCCTTTGAGCAAGAGAT 1762409 37 100.0 41 AGCAAGAGAT ..................................... CTGCGCTTGGTATTTCTTCCACTATTTATGGTGTTGGTTCT 1762487 37 100.0 38 TGTTGGTTCT ..................................... TTGAAGAATTTGGTAAGTTTCTTCTGGACTATTGCCGT 1762562 37 100.0 36 CTATTGCCGT ..................................... AATACAACCTCTTTGAGTTGAACCAGAGGGAGATAA 1762635 37 100.0 33 AGGGAGATAA ..................................... ATAAAATAAAACCTGTAACTAGTTTAGTCGAAT 1762705 37 100.0 34 TTAGTCGAAT ..................................... TATTGCGCCAACACCGTTACTTTGCAAATCAGAG 1762776 37 100.0 34 CAAATCAGAG ..................................... TACGATAATACGTATGTCTTTGAAACCATCTGTA 1762847 37 100.0 42 ACCATCTGTA ..................................... TTGCGTAGCGTATGGATATGGCTTGTGACAGAGCAAACTTTG 1762926 37 100.0 34 GCAAACTTTG ..................................... TTACTAATTTTCTAGCACTCTTAAACAAGTAAGT 1762997 37 100.0 41 ACAAGTAAGT ..................................... TTAATGGTTTCACCTTCTGCATATCCGGTAAGACCAAAGCC 1763075 37 100.0 35 GACCAAAGCC ..................................... TAGCGAAGCATTTTTCGTAAAATCCTAGTCCAGAT 1763147 37 100.0 36 TAGTCCAGAT ..................................... ATTAGGATTGTGAGTTTCTCTCATCATTGTGGAGAG 1763220 37 100.0 39 TTGTGGAGAG ..................................... TTCCTTTGGCAGCAGTAGCAGCATAAATAATTAATAAAA 1763296 37 100.0 38 ATTAATAAAA ..................................... ATGGGATGCTTAAAAAACATCAGCAACTTTCTTTATTC 1763371 37 100.0 41 TTCTTTATTC ..................................... TTGACCTAGAATCCCACAGAACAACGAGCATTAAGACATCC 1763449 37 100.0 TAAGACATCC ..................................... AGCGGGAGGC ========== ====== ====== ====== ========== ===================================== 24 37 36 GTTTCAATCCCTAATAGGGAGTAATAGAAATTGCAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [199,34] Score: 0.18/0.18 # # Final direction: R [0.82,4.91 Confidence: HIGH] >NC_019771 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3250545 37 100.0 35 GCATTAATGT ..................................... TTAAAACTAGGTATCAAGGGTGGGTAGAAGCTAAA 3250617 37 100.0 37 AGAAGCTAAA ..................................... CAAGCTTTGACAAGAATGTTTTTGGAAGGAGAGAAGC 3250691 37 100.0 47 GGAGAGAAGC ..................................... CCAGCAGCACAGGTGTGTAACGTCATGCAAGAATTGGTTGCTACAAT 3250775 37 100.0 35 TTGCTACAAT ..................................... GTAAATTCTTGATTCCAAGCTAATCTAATTCCCAG 3250847 37 100.0 37 TAATTCCCAG ..................................... TAACATTGAATTGTTAGACATATCAGATCGTATTCAC 3250921 37 100.0 36 TCGTATTCAC ..................................... AAACTGCTAGAACACGCTGCATTTTACAAAGCTCAA 3250994 37 100.0 34 CAAAGCTCAA ..................................... CGTTAGCTTCTGGGTCAAAAGTTAAGTCTTTAAC 3251065 37 100.0 35 AGTCTTTAAC ..................................... TGTGTAAGAGTTTCAGGCAATTGTACGCATGGGAA 3251137 37 100.0 35 CGCATGGGAA ..................................... AGTGCTATTTGGGATGCAGCAAAACCAAGACTTGA 3251209 37 100.0 37 CAAGACTTGA ..................................... CGGCTGTTTATGTTAATAAAAAGGCTTTCTTGTTTCT 3251283 37 100.0 33 TCTTGTTTCT ..................................... CAACTTTTAAAGCAAAATCAAAGTAGTACTTTG 3251353 37 100.0 TAGTACTTTG ..................................... TCCGCCCGA ========== ====== ====== ====== ========== ===================================== 12 37 36 CTTTCAACCCGCCCCACTCCGGGAGGGGTGTTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [7,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-12.00,-11.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [338,465] Score: 0/0.18 # # Final direction: F [0.64,0 Confidence: HIGH] >NC_019771 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 5001036 37 94.6 36 TGAGATTTCC ........T....T....................... CCTTGATCAGTTTGAAAAGCTATTGCATCACCTTCT 5001109 37 100.0 35 ATCACCTTCT ..................................... GAGCCTAGGAAGCTCCCTAGCGTTGCGCTGCTGCC 5001181 37 100.0 33 CGCTGCTGCC ..................................... TTTGTATGCAATTGGAATTACGTGGGACGCAGA 5001251 37 100.0 38 GGGACGCAGA ..................................... CACTACTCCAAGTGAAAAACGGTTGATAGAGGCAGCGA 5001326 37 100.0 40 GAGGCAGCGA ..................................... CATTGTCCGACAGCATCATAGCTTTATTGAAAGCGTGATT 5001403 37 100.0 34 AAGCGTGATT ..................................... TGAGACATGGTTTGTGAGAGAACTGGAATTAAAT 5001474 37 100.0 36 GGAATTAAAT ..................................... ATCAAAGAAGAAAACGGTAATGCAATCTTAATTGTC 5001547 37 100.0 39 CTTAATTGTC ..................................... TCATTAAAATTAGCTTGTCGTATTGACGATAACGACAAC 5001623 37 100.0 35 TAACGACAAC ..................................... GCTCTCTACTCTTACGCACTAGATAAGTCTCCAAT 5001695 37 100.0 34 AGTCTCCAAT ..................................... AAAAGGTAGTTCGTTTGTATCAGTAAATCGTGAT 5001766 37 100.0 35 AAATCGTGAT ..................................... TATGGTATTAATCAATTATCGCTTGGGGAAAATCG 5001838 37 100.0 36 GGGAAAATCG ..................................... AATCTCTCAAAATCTGAACCATTAATATATTATTGT 5001911 37 100.0 34 ATATTATTGT ..................................... CTGACCTTATCCCCACCAGTCAAGCTGAGGAAAC 5001982 37 100.0 35 CTGAGGAAAC ..................................... GTTCGGTCTGTTACTGCTGCTGGAGTTGTTCTAAC 5002054 37 100.0 34 TTGTTCTAAC ..................................... TCATTACAGTTGGCGGTTTTCTGGGGTTTGTATT 5002125 37 100.0 33 GGTTTGTATT ..................................... AGTCCCTCGTCTGACAACTTATCTAAATTTTTC 5002195 37 100.0 34 TAAATTTTTC ..................................... TTGGCTAAATCACCATCATCCACAGAGGCGATCG 5002266 37 100.0 34 GAGGCGATCG ..................................... CAGACTTCTGGCTATTTATCAGTCTGATATCATT 5002337 37 100.0 39 TGATATCATT ..................................... ATAGAAAATCAAATCATATATGATTGATATTCCTTTATT 5002413 37 100.0 33 TTCCTTTATT ..................................... GTGGTAGGAATGGCCCCAAGAACCACACATTAA 5002483 37 100.0 38 CACACATTAA ..................................... AAGAAGATTTCGATAATGACGGGATTCCTGACTCTAGT 5002558 37 100.0 36 TGACTCTAGT ..................................... AGATTACATCATAAAGCGTAGGTGTTATGTATTTGT 5002631 37 100.0 34 ATGTATTTGT ..................................... CTGTCCTTCAGAAGATACGGGAATACGTTAGGGA 5002702 37 100.0 36 ACGTTAGGGA ..................................... TTGTCAAGTATGGCTTTGAATCCATTCTCTAATCTG 5002775 37 100.0 41 CTCTAATCTG ..................................... CTATACGTGCTGCAAGTGCTGTATGTGTAGTATCAGATACT 5002853 37 100.0 41 ATCAGATACT ..................................... CTATCTAGATAAACTTATTCTATCTCTATGGGAGTTTACAA 5002931 37 100.0 35 GAGTTTACAA ..................................... TCGATATCCAAATGCACGAATAAGACCACCTAACA 5003003 37 100.0 37 CCACCTAACA ..................................... TTTTCTATGAGTTGCACGGTAAGCAGAACGACGAAGA 5003077 37 100.0 41 ACGACGAAGA ..................................... TTATCATTTAAAGCTTTTTGAATTGGTGACAAGTCCGGGAT 5003155 37 100.0 37 AGTCCGGGAT ..................................... CCTGAGGAAGTACAGCTAGAGGAACGCGCAGAATATG 5003229 37 100.0 39 GCAGAATATG ..................................... ATCAAAATGCTTATTTGCCTCTACAATCTTTTGGCGTGG 5003305 37 100.0 36 TTTGGCGTGG ..................................... ATCAAGTTTACAGCTTGTACAACGGGGCTGCTTCTG 5003378 37 100.0 41 GCTGCTTCTG ..................................... AAAGCCTTTGTTTTTCAAAATCAGTATTAGAAAATTTATTT 5003456 37 100.0 36 AAATTTATTT ..................................... TGGAAGTCTAGAAGGAAAAGTGAATATTTTAGAAAG 5003529 37 100.0 37 TTTTAGAAAG ..................................... CTGATAGCTAATTCACTAGCACCATTAGCTATCTCAA 5003603 37 100.0 GCTATCTCAA ..................................... AGTGGGAGGC ========== ====== ====== ====== ========== ===================================== 36 37 36 GTTTCAATCCCTAATAGGGATTATTTGAAATTTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.27%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.30,-7.30] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [36,274] Score: 0.18/0.18 # # Final direction: R [0.27,5.09 Confidence: HIGH] >NC_019771 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 5738603 37 100.0 41 GGATGCCGCT ..................................... AAAACTGGAGAATGTACCTTGAATGCCGAGGGAGTATGGGA 5738681 37 100.0 39 GAGTATGGGA ..................................... AAGTAAAAGCTGGGTATTTGCCTCAACTTTTTCCCAGTA 5738757 37 100.0 35 TTTCCCAGTA ..................................... AATCCTGAGAAACCGTGGGAAGATTCGGTTAACTC 5738829 37 100.0 39 CGGTTAACTC ..................................... ATCTTAGTCATGAAAAATGGATCGCTTTATGGAGACAAT 5738905 37 100.0 39 TGGAGACAAT ..................................... AAAAGCATCTATTCCCAATTCTTTAAGTACTGGTAATTG 5738981 37 100.0 33 CTGGTAATTG ..................................... TTCACTATCACCCAGTACCCTGATTCTCCTTGG 5739051 37 100.0 33 TTCTCCTTGG ..................................... CACATATTTTACTCTCCCCTTCTAAAACATTCT 5739121 37 100.0 35 AAAACATTCT ..................................... ATTATGGCAACAGGCATTAAGTCCATTGTCCATTT 5739193 37 100.0 36 TTGTCCATTT ..................................... TAGATTTTCAGAGAATTGGAAAAGCTGTCGTTGCTT 5739266 37 100.0 33 GTCGTTGCTT ..................................... TCCGCTTCTAGCTGAGTAGGGAAAACGCAGTCA 5739336 37 100.0 39 AACGCAGTCA ..................................... GTTACTGTTCCAGTTACAGGCGCGGGGTATGCACTTAGG 5739412 37 100.0 35 TGCACTTAGG ..................................... GTCCGGTGAGGGGAAGTCCAGTGGTGGTACATATC 5739484 37 100.0 33 GGTACATATC ..................................... TTATAGATTTTCTACTAGATATTATTCTCTAAT 5739554 37 100.0 44 ATTCTCTAAT ..................................... AAAGAAATATCTTCGCCAGTCCGCAATTGCATTATTTTTGGGAT 5739635 37 100.0 34 TTTTTGGGAT ..................................... TTTAATATTAAATACCCCAGAATTTTCATACCAA 5739706 37 100.0 35 TTCATACCAA ..................................... TTTACACACCTGATACAAATTGCTTTGCAAAAAAG 5739778 37 100.0 37 TGCAAAAAAG ..................................... TCCACAAAACCCAGAAAGAGACTTTTTCCAACAGCAA 5739852 37 100.0 35 CCAACAGCAA ..................................... TCCGCACTTCCTGACAATGAAAAAGTTATTTTATG 5739924 37 100.0 33 TTATTTTATG ..................................... AACACTTTAGGTCAACCTAGGCTTAAGGGGAAT 5739994 37 100.0 34 TAAGGGGAAT ..................................... GCTACATGGTTTGTTACTCCCAAAAAGTCAGATA 5740065 37 100.0 39 AAGTCAGATA ..................................... CAAATCAATAATATTCATAAAACGCCCTGAGAAAAATTA 5740141 37 100.0 36 AGAAAAATTA ..................................... AACCGAAATACTTGAGCTACAACGGCAACGGCAATA 5740214 37 100.0 39 AACGGCAATA ..................................... TATTAGATTATCTATTAGATAATTTACCCATACCATAAA 5740290 37 100.0 34 ATACCATAAA ..................................... TTTAGCGAATTGTGATTGATAAGTTTTTCTTTGA 5740361 37 100.0 33 TTTTCTTTGA ..................................... TTTTTCCAAATTAGGCATGAAGACATCTTCCAG 5740431 37 100.0 33 CATCTTCCAG ..................................... TGGACGCTCAAAACCAATGCGCCAACCCCAGTT 5740501 37 100.0 33 AACCCCAGTT ..................................... GAAGGAAGTATTTTTACAAATATATTTGCTACA 5740571 37 100.0 34 ATTTGCTACA ..................................... AAAACTTTAGTATATTAACTGATGCCACCTACTT 5740642 37 100.0 CCACCTACTT ..................................... CAAAAGCGCA ========== ====== ====== ====== ========== ===================================== 29 37 35 ATTGCAATTTCTATTACTCCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.20,-5.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [242,192] Score: 0/0.18 # # Final direction: F [4.5,0.64 Confidence: HIGH] >NC_019771 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 57665 37 100.0 38 GGATGCCGCT ..................................... ATCAAGAAATTCGTCTGTAGCTTCTGCTGCCACATTTT 57740 37 100.0 33 GCCACATTTT ..................................... GAGAGAGTTGCACTTTTAAAAGGTCTTTTAGAT 57810 37 100.0 45 TCTTTTAGAT ..................................... AGTGTCCAATGCTTTGTTTACCTTGTGGATTAATAGCGATCGCCA 57892 37 100.0 38 GCGATCGCCA ..................................... CATTTATTAACCATTGATGAATTATTTCAGCGTCATCA 57967 37 100.0 34 AGCGTCATCA ..................................... CATTTGATAACTGTGTAGGTGTGGTGAATTGCAC 58038 37 100.0 34 TGAATTGCAC ..................................... CTCAATAGCTTGCACATTGATACCTAGCCGTCTT 58109 37 100.0 36 TAGCCGTCTT ..................................... GTTTTTGGGCATCTGGCAATGGTAGGGGTTCATCTG 58182 37 100.0 33 GGTTCATCTG ..................................... ATCAAGGTAAAGTACGATTGTTATCTTATCCAT 58252 37 100.0 37 TCTTATCCAT ..................................... GGTACATCGGAAGAAACAACCGATACCAACCGCACAC 58326 37 100.0 AACCGCACAC ..................................... AAATCGATAG ========== ====== ====== ====== ========== ===================================== 10 37 36 ATTGCAATTTTCATTAATCCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.27%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-7.30,-7.30] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [246,107] Score: 0.18/0.18 # # Final direction: F [4.68,0.27 Confidence: HIGH] >NC_019772 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 151821 35 100.0 35 TAGCCTAGCC ................................... GAGGAAACAGCATGAATAAAATGGGTGCTGAAACT 151891 35 100.0 39 TGCTGAAACT ................................... GTTTTCTGTTTTGAATCTAAAAAAGAAATGATTTTCTCT 151965 35 100.0 36 GATTTTCTCT ................................... TACATCAATGTAACTGTTCCATTGTTGTTAGTTGTA 152036 35 100.0 37 GTTAGTTGTA ................................... TGTCTTTTCCATTCAAGATAACCCAAAATAGAAAGCG 152108 35 100.0 38 ATAGAAAGCG ................................... TTATCTCAATTTCTCTTGGTACCAATACTGCATCATTA 152181 35 100.0 35 TGCATCATTA ................................... CTCAAATAAAACAACTTCCATCGGCTTTTTGTAGT 152251 35 100.0 38 TTTTTGTAGT ................................... TTGGTTGGAAACCTGAATGCGATACTGAGTTCCATGTT 152324 35 100.0 39 GTTCCATGTT ................................... CTTGCGAATTTTTGAGCCTTTGTAAGGCTGAAGCTATTT 152398 35 100.0 35 GAAGCTATTT ................................... CGGCGAGAGCCGCATGGGTGGCAACTCCGACTAAT 152468 35 100.0 37 TCCGACTAAT ................................... AAGCTTCTTCAACCATGCAGTTACAGTGTTGACACTT 152540 35 100.0 34 GTTGACACTT ................................... TTTTTTTCTAACTGTGTAAATTTCCACAACTTGA 152609 35 100.0 38 CACAACTTGA ................................... TTTCAGACTGAGACTGAGCCAAAACTGGACTTGAAAAA 152682 35 100.0 39 ACTTGAAAAA ................................... AATTCCACTATCGCAAAAGTTGGAGCAGGACTATCAGTT 152756 35 100.0 39 ACTATCAGTT ................................... TGTTCGTACACCAACTAAACGCGTCATGGAGCCAAGCAA 152830 35 100.0 40 AGCCAAGCAA ................................... CGTGACCTGTTGCCAGGAATATTAATGAAACAGCTAAACA 152905 35 100.0 37 CAGCTAAACA ................................... CTCTTTCCAGAACTCTTTTATCCTTCTCAGTGGGATT 152977 35 100.0 36 CAGTGGGATT ................................... GAAAAAACAAGCGTAACATCGCCTGAACTATAAAAA 153048 35 100.0 39 ACTATAAAAA ................................... AGGAGGGTACCCTTGCTCTTTCAAGATTTTTTCATCAAA 153122 35 100.0 39 TTTCATCAAA ................................... CCTCACGTGGGCTGTATCAACCCAAATACCAGTTGTAAA 153196 35 100.0 39 CAGTTGTAAA ................................... TTGCCGCCTTGGGAGGTGGAGTTTCCTCCGTTTCCACCA 153270 35 100.0 41 GTTTCCACCA ................................... TCGGTGGCGTTATTCTATTCAGTTTCTAAATCATTTTGCAA 153346 35 100.0 37 CATTTTGCAA ................................... TTTTCGTGCAGAATCAGCGAGATCTTTTGAGGCAGAA 153418 35 100.0 37 TGAGGCAGAA ................................... ATCTGATTTCCGGTTGTTATGCCTAACATAACAACTA 153490 35 100.0 41 ATAACAACTA ................................... TCAAGGCAATTGCACTCATTGCCGTAGTCGACCACCAATAC 153566 35 100.0 37 CCACCAATAC ................................... AGCAGATACAAACAAAGATATCAATATATAAGCTATA 153638 35 100.0 35 ATAAGCTATA ................................... CCTCTAAGTTGGACTGAAATTTTAGCTCTCTAAAA 153708 35 100.0 36 CTCTCTAAAA ................................... CTCAAGACACATATTCTTTGCTTTTAGTAAAACATT 153779 35 100.0 36 GTAAAACATT ................................... ATTGTCGATTGTTCCTTGGTCGCCCTTGGCAACCAA 153850 35 100.0 43 TGGCAACCAA ................................... TTTTAATAGAATACGAAACTCTAATTATAACAAATATCACAAT 153928 35 100.0 ATATCACAAT ................................... AACAAAATGT ========== ====== ====== ====== ========== =================================== 30 35 37 CTTTTAACTTCTTAGAAAGTTGAACTAATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:71.43%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.00,-2.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [50.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [212,345] Score: 0/0.18 # # Final direction: R [0,0.64 Confidence: HIGH] >NC_019771 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 5832140 36 100.0 38 GAAGTGAACT .................................... GTCCATTCTTCTTCAGTTTCTTTAGCAGAATCAACTAT 5832214 36 100.0 31 AATCAACTAT .................................... ATACAGTGGTATTCAGGTTACCACTGACCTG 5832281 36 100.0 39 CACTGACCTG .................................... TTTCATTAACCCAACCATTTCACCACATTGTTGTTCTGA 5832356 36 100.0 GTTGTTCTGA .................................... ACATCCAATAC ========== ====== ====== ====== ========== ==================================== 4 36 36 CTTTACAAACCCACTTCCCCGCAAGGGGATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [11,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-9.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [56.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [371,176] Score: 0.18/0.18 # # Final direction: F [0.92,0.27 Confidence: MEDIUM] >NC_019771 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 58468 36 100.0 36 TGCACATCTC .................................... CACTTAGTTTTTCTTGCTCTGACATTTTAGCCCCTA 58540 36 100.0 43 TTAGCCCCTA .................................... CGTCCATCAGCCCAAACCTCCAAATTCACGGTAGAGTCCTTAG 58619 36 100.0 36 GAGTCCTTAG .................................... CCCCTCTGTGTACCGCCCCAAAGCTTCACGCCAACC 58691 36 100.0 36 CACGCCAACC .................................... CAAGCGTTCCTGGCGGACATCCTTCGATGCACTCCA 58763 36 100.0 39 ATGCACTCCA .................................... CTTCGCCCAAGCGAGTCCAGAAGATTTTGTAATCCGTAC 58838 36 100.0 36 TAATCCGTAC .................................... CATTCATGTTTCAATCAGTTTTATAAACTCCTCATA 58910 36 97.2 42 ACTCCTCATA .......................A............ CCGGGCATCAAACCCAACTGATCCGATACAGCAAGCAGCAAG 58988 36 100.0 42 AAGCAGCAAG .................................... CAAATAGCTCATTCCATAAAAGCTGGGATACTGTTAAAAAAA 59066 36 100.0 38 GTTAAAAAAA .................................... CTTGAGATTTTAACTGTAGTTTCTGCCAATGCTGGGGA 59140 36 100.0 36 ATGCTGGGGA .................................... CATACGGGTGTAGCTTTCAACAACATAGAAACGCTA 59212 36 100.0 40 AGAAACGCTA .................................... CGGGTAGGATTCGCCTGTTTCGGGGACAAAGAACGAATTT 59288 36 100.0 34 GAACGAATTT .................................... CACGAAAGAGGTGAAAAAAACCACCGATAAAGTA 59358 36 100.0 36 CGATAAAGTA .................................... CGAAGAGAGCCGCCAAAATCCTGTGAAGAAGCAAAA 59430 36 100.0 37 AGAAGCAAAA .................................... CATAACTGAATCAACGAAATATTCAACGATTTTTACT 59503 36 100.0 GATTTTTACT .................................... ATCACACATT ========== ====== ====== ====== ========== ==================================== 15 36 37 ATTGCAATTTTCATTAATCCCTATTAGGGATTGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.22%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-6.60,-6.50] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [58.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [105,300] Score: 0.18/0.18 # # Final direction: F [4.5,0.45 Confidence: HIGH] >NC_019772 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 31583 37 100.0 35 ATTTTACTCT ..................................... ATACGCGCTGCGAGTGCGGTATGTGTGGTAAGTGA 31655 37 100.0 39 TGGTAAGTGA ..................................... ATAGACAAGAACTAGAACGTAAAGAGATTATCTGGAAAA 31731 37 100.0 34 ATCTGGAAAA ..................................... CTTACTCCTACTATTCCTTACTTTGTTTTTCCAT 31802 37 100.0 34 GTTTTTCCAT ..................................... ATAATTTAGATCCATTTATTTATCGTTGGAAATG 31873 37 100.0 39 GTTGGAAATG ..................................... TCGATAGTGAATCGTGGGATATTTTTGTTCACAAGAAAC 31949 37 100.0 41 CACAAGAAAC ..................................... ACTGATATCCAGCAAGTCTCGTGGGCTTCATCACAAATAAT 32027 37 100.0 42 CACAAATAAT ..................................... TTGGCAAGACATCCTACAATATAGATACCTTTTGTTTTGTTG 32106 37 100.0 41 TGTTTTGTTG ..................................... TTGGGCGTAGCTTCTGAGAAGCTAGAAATTCCTTCAGATGT 32184 37 100.0 CTTCAGATGT ..................................... AAATTATTGC ========== ====== ====== ====== ========== ===================================== 9 37 38 GTTTCAGTCCCCTTGCGGGGATTAGTTATATCGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.05%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-10.20,-9.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [45,3546] Score: 0.18/0.18 # # Final direction: F [0.64,0.18 Confidence: MEDIUM] >NC_019771 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 739352 37 100.0 38 GACGGGCGCG ..................................... CTTTGTACGAGCAGACAACATTTTAGTTTTCCTCCAAA 739427 37 100.0 36 TTCCTCCAAA ..................................... TCACCCCGCTGCATCCATTCCTCTACTTTTTCAAAA 739500 37 100.0 38 TTTTTCAAAA ..................................... TTTTATGATCGAAGAAATCAAGGATAGCTGTACCTCAA 739575 37 100.0 39 TGTACCTCAA ..................................... TCCACAATCCGCGTTTGCGATCGCAATTAGCACCCCCCG 739651 37 100.0 42 GCACCCCCCG ..................................... AAGCGAGAGAAAGAAATACCAGAAACAGAATATATCGTTGAG 739730 37 100.0 TATCGTTGAG ..................................... ATAACTAGAA ========== ====== ====== ====== ========== ===================================== 6 37 38 GTTTCAACTACCATCCCGACTAGGGGTGGGTTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [9,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-12.90,-7.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [48.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [488,404] Score: 0/0.18 # # Final direction: F [0.37,0.27 Confidence: LOW] >NC_019772 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 57672 37 100.0 37 AGATGGCGGG ..................................... AATCAAATTCAGCTACGTACTTCGCGAAGCTTTCTAA 57746 37 100.0 34 AGCTTTCTAA ..................................... TCTTATCGTCTTGTTCTGCGGTTAGACCGATGCT 57817 37 100.0 36 GACCGATGCT ..................................... GCTACAATCACACAGAAAAAATTTTTATTGACCTAA 57890 37 100.0 37 ATTGACCTAA ..................................... ATTAGATCAGAATATTCATCTGTGGCAGATGAGCCAA 57964 37 100.0 39 GATGAGCCAA ..................................... GTTTCACCACTGCTACCAGACCAACTACCTTTTTTCTTG 58040 37 100.0 39 TTTTTTCTTG ..................................... AAGCGTAAATATTTCCCGTATGAATTGGGGTAGGGTTTC 58116 37 100.0 36 GTAGGGTTTC ..................................... AAGACAATGCAGGAATTAAAAGGATACACACCAACA 58189 37 100.0 38 CACACCAACA ..................................... GCTTTGTCTATAGTTTATAAGGGTTAGAGTGATCCAAA 58264 37 100.0 36 GTGATCCAAA ..................................... AATTCTTCTTGTTTCTGGATGTTATAGAATTTAGAT 58337 37 100.0 35 GAATTTAGAT ..................................... CTCTTTTTATCAATCTTCCTCTGTAATCTTTTGAT 58409 37 100.0 35 ATCTTTTGAT ..................................... GTTCTGGAGGAGGAGGATCAGGGGGTGATGCGAGT 58481 37 100.0 39 TGATGCGAGT ..................................... TCAACGCATATGGCGCGCAAGGTACAAGTTTCTGGACGA 58557 37 100.0 38 TTCTGGACGA ..................................... TTCAGTTGGAATACAACAATAGGCGAAGTCCAGCTTTA 58632 37 100.0 40 TCCAGCTTTA ..................................... TATCTTACTATAGATACGACTATAGATAGTGATATAGGGG 58709 37 100.0 35 GATATAGGGG ..................................... TCAATCAAGTACAATGGTGGCAATATCTCTTAAAT 58781 37 100.0 36 TCTCTTAAAT ..................................... ACCCTCGCTGTCTGGCAATTCTACTAGATGAGCTAT 58854 37 100.0 35 GATGAGCTAT ..................................... TAGTCAGGTAGCTGCTGATTACCGTTTTGTGCGTA 58926 37 100.0 34 TTTGTGCGTA ..................................... ATCCTACTAACCGATGGCGAAGATCTCAACATAA 58997 37 100.0 42 CTCAACATAA ..................................... GTTAAATCTCTGATTCCAAGCTCTCTGTTATTCGCTGCTATA 59076 37 100.0 38 CGCTGCTATA ..................................... TAATATCTGGGGGATTGAGTGCGATCGCCAAATAGCAG 59151 37 100.0 35 CAAATAGCAG ..................................... AGGAATTTAACTCATTTTGTAGGTTAGTTTCTTCA 59223 37 100.0 43 AGTTTCTTCA ..................................... TCTTCCAAAAATCAAAAGATATTCTTGCTGACAAGCAATCAAT 59303 37 100.0 38 AGCAATCAAT ..................................... TACACTAAAAAAATAATCCCCCAAACCGTCGTAACCGG 59378 37 100.0 38 TCGTAACCGG ..................................... GAGAAAATGACAGAAGAACAAGCAAAAGAACTTTTAAT 59453 37 100.0 36 AACTTTTAAT ..................................... TTGGCGTAAATGTAGCCTATTAAATCCCCCTCAAGC 59526 37 100.0 38 CCCCTCAAGC ..................................... AACAATGGTTCGGGTTTCTCTATGTCTTGACCCTTGCC 59601 37 100.0 37 GACCCTTGCC ..................................... ATATCGTTATATAGTAATACGCGAGGATAGCGATATA 59675 37 100.0 38 TAGCGATATA ..................................... GCCAATTTCAGAAAGATTGCCAACAAATGATTTAAGAA 59750 37 100.0 35 GATTTAAGAA ..................................... TTAAAATCAGCCATGATCTTTAATAATTAAATTTA 59822 37 100.0 36 ATTAAATTTA ..................................... ATTTCTTCCAGGGTTGGTTTATGGTGGAAAACCCTG 59895 37 100.0 36 GAAAACCCTG ..................................... CAGAGAATCCAAACATCTTTAGAATCACCGCCAACC 59968 37 100.0 37 ACCGCCAACC ..................................... AAAAGCTTGTTGTTTGTCAAGATGAATGTCGCAGAAA 60042 37 100.0 33 GTCGCAGAAA ..................................... TAAATGTACTATGCTGCTCTGGCATTTAAAATA 60112 37 100.0 34 ATTTAAAATA ..................................... TTAAGAATATGACTAATTATTGCAATACAGGTGA 60183 37 100.0 37 ATACAGGTGA ..................................... CAACTATCGAAGCGGTTTCTTTCTGCTAAGTCCAATG 60257 37 100.0 37 AAGTCCAATG ..................................... CAAACAGCCATAGACAACACTATTGCCACCGTTGGCG 60331 37 100.0 38 ACCGTTGGCG ..................................... GAGATACAAAGCAATCTGAGAAGTCTTTGCCACCTATA 60406 37 100.0 36 GCCACCTATA ..................................... TAATAAGCTTCCTTTATCGATCTAAAAGCTTCAGTA 60479 37 100.0 35 AGCTTCAGTA ..................................... TAACATAAACCCATAACCCTTGTCAAGCATGACTT 60551 37 100.0 36 AGCATGACTT ..................................... TTCTTGCCATATCTGCAATAGCATTAGCAATCAAGA 60624 37 100.0 39 GCAATCAAGA ..................................... ACAATACTCGCAGACTTAGAAGATTTTTCAAGCCTAGCG 60700 37 100.0 37 AAGCCTAGCG ..................................... AAAAGTTAGTTGCTAAAGAAGTTGGTGCGGCTGTCGG 60774 37 100.0 41 CGGCTGTCGG ..................................... ATGCTATCCTATTAATTGCCTTATCAAAATAGTAGTGATTG 60852 37 100.0 35 GTAGTGATTG ..................................... AATGTAAAATAGACAACATGAATCCATCATTGTAG 60924 37 100.0 35 ATCATTGTAG ..................................... ATTATCTATCTAATTGATTATGTTGTATGTAACTA 60996 37 100.0 38 TATGTAACTA ..................................... TCAATCAAGTCCCAACATAAAGGCACTAGTTATCAAAA 61071 37 100.0 35 GTTATCAAAA ..................................... AATCCAATTAAGAACAGAAATAAATAACTCATCTT 61143 37 100.0 AACTCATCTT ..................................... GGCTTTCACT ========== ====== ====== ====== ========== ===================================== 48 37 36 GTTTCGATATAACTAATCCCCGCAAGGGGACTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.05%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-9.30,-10.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [210,333] Score: 0/0.18 # # Final direction: R [0,0.64 Confidence: HIGH] >NC_019772 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 32325 37 100.0 34 CACAAATAAA ..................................... TATTTGACCTTAGTGCCTGGTAAGTGGGGTGCAA 32396 37 100.0 35 TGGGGTGCAA ..................................... TTCTGAGCTTTTACAACTCCGGCCGCGATTAAAGG 32468 37 100.0 37 CGATTAAAGG ..................................... TAAAAAAAATCATGGCTACCACACAAACTGCTCTTAA 32542 37 100.0 39 CTGCTCTTAA ..................................... GATATAACTTTAATGCTTTAATGTAGACGATACTCCTTT 32618 37 100.0 37 ATACTCCTTT ..................................... AACTAAACTACCAGAATCTGTACTTATATCTAGGAGA 32692 37 100.0 37 ATCTAGGAGA ..................................... TCAATTTGATAGCTGCCAGGAATCGGACAAGGGGCAG 32766 37 100.0 38 CAAGGGGCAG ..................................... TTCATTAAATTGTCGAGGTTCAGTTTTGATTGATAAAT 32841 37 100.0 42 ATTGATAAAT ..................................... CATCAACCTCAATTAAATTAAGGGTATCTTCAACTTTAAAAC 32920 37 100.0 39 ACTTTAAAAC ..................................... CTGATGAAAATCATAATTGCTGATAACCTGTGTAGGGAT 32996 37 100.0 43 GTGTAGGGAT ..................................... GGGGGCTAACTTATCTAGGGTTAGGTTTTTGGATCAATGCTAA 33076 37 100.0 34 TCAATGCTAA ..................................... CTATCTCCAATCGAGTCTTATCAAATCTTGACTG 33147 37 100.0 37 ATCTTGACTG ..................................... TATCTAGTCTGTAAAAAAGTCTGGTACATCGACTGGT 33221 37 100.0 37 ATCGACTGGT ..................................... CCAGATAAGGTTTGATAGCAAAGGGGAGTTTAATCTT 33295 37 100.0 35 GTTTAATCTT ..................................... AAGGCAAAATTCATATTATTCAACTCCGATGCTAT 33367 37 100.0 37 CCGATGCTAT ..................................... AACCTGTTACAGGTTATGCTAGATAGGTACTAGCAGT 33441 37 100.0 36 TACTAGCAGT ..................................... ATTCCATTAAAAGAAGCTGCCAAAAAACTGAACTAT 33514 37 100.0 37 ACTGAACTAT ..................................... TATTGTTGCAACTGTCTGGTATTGGGATAGAGATGAA 33588 37 100.0 37 TAGAGATGAA ..................................... CTGTAGACGACATAATTGAGTCTCCAGACTTTTGGAT 33662 37 100.0 36 ACTTTTGGAT ..................................... TTTACAGGGAATCTTAAAAGAAATTCATAAAATCAT 33735 37 100.0 36 ATAAAATCAT ..................................... TTTTTCTTAAATTAGAAATAGAATTTATAACATCTA 33808 37 100.0 35 ATAACATCTA ..................................... TTTCAACAAAGGTTTTTTGTTCCGTTTCATTGTCA 33880 37 100.0 42 TTCATTGTCA ..................................... TCTCGAACCGGTCAAGCGATCGCTAAAGAAAAACTTATTAAT 33959 37 100.0 36 ACTTATTAAT ..................................... GTAGCTTACAAAAACATCTTAGGCAATATAAAAGCC 34032 37 100.0 36 TATAAAAGCC ..................................... TTTTAAGGTGCAACGAGACTGGGTATATACCGTTGA 34105 37 100.0 36 ATACCGTTGA ..................................... AGTGTTCCCTTTCCCTGGAACAACCAAGCCTATCAC 34178 37 100.0 37 AGCCTATCAC ..................................... TTGAAGTTGTGCCAAACTTTTCCGAATCCGGCTATTT 34252 37 100.0 40 CCGGCTATTT ..................................... TAGAGTCTTACATAGCCTCGAATTTTGTGTCTATAGATGA 34329 37 100.0 36 CTATAGATGA ..................................... ATTCACTGGACAGATGCAACAGATTTTAAGGTTAAT 34402 37 100.0 35 TAAGGTTAAT ..................................... CTAGAAAATAGTAACGTTTTAAAGCCAGAAGAGGT 34474 37 100.0 CAGAAGAGGT ..................................... CCCGCCATCT ========== ====== ====== ====== ========== ===================================== 30 37 37 GTTTCAGTCCCCTTGCGGGGATTAGTTATATCGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.05%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-10.20,-9.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [65.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [787,1256] Score: 0/0.18 # # Final direction: F [0.64,0 Confidence: HIGH] >NC_019773 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1994 36 100.0 36 TTTTTGTAGC .................................... GTTCTTGCAACAATTCCTTCAATATCTATCTACTAA 2066 36 100.0 43 TATCTACTAA .................................... ATTACAAAATCCAGCCTCAAAAAAATTAATAAGGAAACAGAAA 2145 36 100.0 34 GAAACAGAAA .................................... GGCTTTTCTGGAGTATTGGTGATAAATAATTATG 2215 36 100.0 32 AATAATTATG .................................... GACTCAATTGAATATCACCTAATTGAACTTAC 2283 36 100.0 38 TTGAACTTAC .................................... ATTTTTCGGGCTGGAACTTACCACCCACCAACGATGGT 2357 36 100.0 35 CAACGATGGT .................................... ACAATCCTAGTGATAACAACGAACCCGTATCAAAA 2428 36 100.0 37 CGTATCAAAA .................................... ACCTTCCGCTTTTACGGAAATTGATAAACAAACCCCC 2501 36 100.0 ACAAACCCCC .................................... AGTTCACTTCT ========== ====== ====== ====== ========== ==================================== 8 36 36 GTTTCCATCCCCTTGCGGGGAAGTGGTTTTGTAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.60,-9.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [61.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [263,410] Score: 0/0.18 # # Final direction: R [0.27,0.74 Confidence: MEDIUM] >NC_019773 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 23460 36 100.0 36 NNNNNNNNNN .................................... TCTAAAGCAGTGCAATCTGTCGCAACTTCAATTAAA 23532 36 100.0 36 NNNNNNNNNN .................................... AATATAGTCACAATCTACCTTTCACACAAGTAGAGT 23604 36 100.0 35 NNNNNNNNNN .................................... TAGAAACCTTTACAGCTAAAGATAAAGAGCTATCT 23675 36 100.0 41 NNNNNNNNNN .................................... CTGATTGACATCGGGTTATGTGAAGATAACACGGAAGAATA 23752 36 100.0 39 NNNNNNNNNN .................................... TAGATGAACTTGTAAACTTTGGTAGTAAATCACATGATG 23827 36 100.0 46 NNNNNNNNNN .................................... CCACGTCATCCATGCTGGCTCGTAGGTGGAGAGAGATAGCAACTAG 23909 36 100.0 50 NNNNNNNNNN .................................... TTGGCAAGTAGTTCAAACTGGTCAAATCAGTGTTGAAGATCCAATTACTA 23995 36 100.0 39 NNNNNNNNNN .................................... AAACAATCATCATCTACATCATCATATTTGAAATAACCA 24070 36 100.0 39 NNNNNNNNNN .................................... TCTGTTTGTTGTAGCTTACAAGCTACTCTACAAATTAGA 24145 36 100.0 36 NNNNNNNNNN .................................... TTATCCGAGTCTTCAATACGTCTTTTTGTCAACAAA 24217 36 100.0 39 NNNNNNNNNN .................................... TTAATACTAGCTTAATTCTTACTAAAGAGTCATTTTACG 24292 36 100.0 41 NNNNNNNNNN .................................... TAGGTGATGTACCATTACTTGAACAAACTAAATTTGGCAAA 24369 36 100.0 38 NNNNNNNNNN .................................... CATCAAGCAGGACATCATGTAACTTTTGAAAATCGAAA 24443 36 100.0 37 NNNNNNNNNN .................................... AATAGTGGTTTAATCCAACTGTGTACGTTCTCATCTG 24516 36 100.0 38 NNNNNNNNNN .................................... GGAAGTATTCTAAAACTACAAAGTGAAGCTTATTCTAA 24590 36 100.0 41 NNNNNNNNNN .................................... AAGATGACACTCTACAAGGGTTATAAGCTCCATTCATCAAA 24667 36 100.0 39 NNNNNNNNNN .................................... CCTTTTAGCACAATAACTGTAATAGTTTCTGCTACTGAT 24742 36 100.0 35 NNNNNNNNNN .................................... CTGACATTATCAGACAAGTTGAACAGCGTGAAATG 24813 36 100.0 39 NNNNNNNNNN .................................... TCTACGCAGAGTCAGGTAAAGTCTCTTATTTTCAAGGTG 24888 36 100.0 42 NNNNNNNNNN .................................... CTACCACCAAAGACCAATCAAGTTAGACCTGAGCATTCTACA 24966 36 100.0 35 NNNNNNNNNN .................................... CATATTAAGGCATCTTCTTGGGACGGATTAAACCA 25037 36 100.0 36 NNNNNNNNNN .................................... TGGAGTGTCTCACCATTCTCGGTAGCTACTGCCTCG 25109 36 100.0 38 NNNNNNNNNN .................................... ACTTTATCACGGTACTATCTGAGGACTTGATGTGGGAG 25183 36 100.0 36 NNNNNNNNNN .................................... GATTGTTGCTTTTTAGGTATAGACGATGATGAGATA 25255 36 100.0 34 NNNNNNNNNN .................................... GTTAAGGACGCGGTTATGACTAACGAAAAATCAA 25325 36 100.0 41 NNNNNNNNNN .................................... TGATGATGTACTGGTAGTTAGTTTACCTGCTCAATCTATGG 25402 36 100.0 41 NNNNNNNNNN .................................... GTGTAAACTGCTTTATCTGGTAATTCATTTAATAGTTGTTT 25479 36 100.0 36 NNNNNNNNNN .................................... GAAAGCGGTAAGTTCGATGCTCAACATTTACGAATA 25551 36 100.0 49 NNNNNNNNNN .................................... TTGTGATCAGTAGAATCAGCTAAGTCCTCATCTAGCTGCCGTAAATAGT 25636 36 100.0 39 NNNNNNNNNN .................................... TCTGCAAAAATGGCTGCTGAAGAATCAATTGATTACGAC 25711 36 100.0 43 NNNNNNNNNN .................................... TAGCCCTCTTCCCTACTCCCCCTAGTTATCCTCGATCCATCTG 25790 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 32 36 39 GTTTCCATTCAATTAATATCCCCAGCGAGTGGGAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-1.80,-1.90] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [65.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [336,6] Score: 0.18/0.18 # # Final direction: F [0.45,0 Confidence: MEDIUM] >NC_019776 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1064529 37 100.0 35 ATGGTGCTAC ..................................... TATTGTTAGTGATTCTTGCAGTTGTAGCTTATTAT 1064601 37 100.0 37 AGCTTATTAT ..................................... TAATGTGGTGGTGCGTGGGGAAGGGGCGTAAGAGTAT 1064675 37 100.0 36 GTAAGAGTAT ..................................... TCGTTCAGTACGCTAAATTGTAGTGGGGCGAAAGCC 1064748 37 100.0 40 GGCGAAAGCC ..................................... ACTTAGATGGGGTTGGCTACCAAGTTGATAGCGAAATTGG 1064825 37 100.0 42 GCGAAATTGG ..................................... TTTTCAATATTTGCAGTACGGAAAAACTGTCAATTTTGTTAA 1064904 37 100.0 40 ATTTTGTTAA ..................................... GAGAAGAAGAAAAACAAGCTCGTCGTACTGCAAAAGCGGC 1064981 37 100.0 38 CAAAAGCGGC ..................................... GAATACAACAGGGAATACAACAGGGAATAGTAAGCGAA 1065056 37 100.0 37 AGTAAGCGAA ..................................... TTACATACGAAAAAGGGCATGGTATATTATTTACAAG 1065130 37 100.0 45 TATTTACAAG ..................................... TCGTAACAACTCCTTAGAGCTTCGTGCCAAAGGTCATAATGTGCC 1065212 37 100.0 42 ATAATGTGCC ..................................... TACAGTCGCAAGGAGACGATTAGGGGGGTGTAAAAACCATTG 1065291 37 100.0 40 AAAACCATTG ..................................... AAGTTATGCACAACAGCTGTACGAGATTGATAACCATGGA 1065368 37 100.0 38 TAACCATGGA ..................................... ACTACTACAAAACACCTTACAAGGCTTGGATCTTGACA 1065443 37 100.0 39 GATCTTGACA ..................................... GTTTAAATACTATATATCTTTAGCAGAAGCCACTTCCGT 1065519 37 100.0 CCACTTCCGT ..................................... CCTATCTTTT ========== ====== ====== ====== ========== ===================================== 14 37 39 GTTTCCGTCCCCTTACGGGGTAAATGTGGAAATCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:51.35%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [401,484] Score: 0/0.18 # # Final direction: R [0,0.64 Confidence: HIGH] >NC_019776 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1149999 37 100.0 37 ATCAATGGCA ..................................... GATGGTTGGGTGCAAGGAGATGAGATTATATACCCTA 1150073 37 100.0 41 ATATACCCTA ..................................... GCTGAACTAACAACGTCTCCTTTTTTTACTCGCCGTCCATC 1150151 37 100.0 39 GCCGTCCATC ..................................... CAAATAGAAGCGTTTAGAAATCAGTTAAAAGGGATGAAA 1150227 37 100.0 45 AGGGATGAAA ..................................... GACGAATACTATAACTCCGATACGTCCGACATTGGTGTAATGGAG 1150309 37 100.0 43 TGTAATGGAG ..................................... AGCTGGCCTTTGCCCTCAGGGTATAGCGGTTACACTGACGCTA 1150389 37 100.0 38 ACTGACGCTA ..................................... GAAATAAAAGAGGAGGGTACTAAAATCCCTATGACTAA 1150464 37 100.0 38 CTATGACTAA ..................................... CCCAAGGCTGCTCAGGGGCAGGTAGTACAGGTGCTCAT 1150539 37 100.0 40 AGGTGCTCAT ..................................... GGTAAATAAAGCACATTTCGGAATAATCCCATTATTATGA 1150616 37 100.0 44 ATTATTATGA ..................................... GAGATCAAATTAATGTATATGTTAGAGACAGTTTAACTTTCTTG 1150697 37 100.0 AACTTTCTTG ..................................... GATTTATCTG ========== ====== ====== ====== ========== ===================================== 10 37 40 GTTTCCGTCCCCTTACGGGGTAAATGAGGAAATTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.05%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [63.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1016,502] Score: 0.18/0.18 # # Final direction: F [0.45,0.37 Confidence: LOW] >NC_019776 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1141225 37 97.3 38 GAATTTTGGA ...........T......................... TCCAAAGACTGAAGCGGATTTGATCGCCGAGGAGGCAA 1141300 37 100.0 32 GAGGAGGCAA ..................................... TTGTAAGAATAGCCCTCTTTATTCTTATTCCA 1141369 37 100.0 41 TCTTATTCCA ..................................... TTTCGGGAAAAGCCTCCCGTTCCCACACACCAGAAAGGTTC 1141447 37 100.0 45 AGAAAGGTTC ..................................... AGAAAAGGATCTTAAAATTATGTCTAACTCTACCTCTGCTACTTT 1141529 37 100.0 43 CTGCTACTTT ..................................... AATTGATCAAACTACTACTAAAGCGTTCTTTCTATTTAAAGAA 1141609 37 100.0 42 ATTTAAAGAA ..................................... CCTAGCTGAAGGCGTAAAAATCAGCCTGAAGGATGTATACGA 1141688 37 100.0 45 ATGTATACGA ..................................... GTTTACGCCACCATATTGCCCTTCAAAATCCCTGCTTTCCCCGTC 1141770 37 100.0 41 TTTCCCCGTC ..................................... CTTGCCGAATAGACATCCAATCCATTCGGCATTCTAAAGGG 1141848 37 100.0 45 TTCTAAAGGG ..................................... GTGGACGAGATGGCTTTTACGCCCCCCCGAAACAAGACGAAGAAG 1141930 37 100.0 38 GACGAAGAAG ..................................... ATCCACATTACTGTTTCTAGTGATGATTCCGCTTCTAA 1142005 37 100.0 44 CCGCTTCTAA ..................................... GTTAACACTTTGTTAGTGTATTAATATGAGGTTAGGAACACCAC 1142086 37 100.0 37 GGAACACCAC ..................................... TCAGAGATTGGTTCTTGTTTGGACGAAGTAATTGGGA 1142160 37 100.0 GTAATTGGGA ..................................... CCTACCTTTG ========== ====== ====== ====== ========== ===================================== 13 37 40 GTTTCCGTCCCCTTACGGGGTAAATGTGGAAATCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:51.35%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [173,364] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_019776 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1149597 37 100.0 39 TATCAAAAGC ..................................... CCCCCAGGACGTACTAAAAGTCTTCCAAGAGGAGAGTAC 1149673 37 100.0 45 AGGAGAGTAC ..................................... AACGGAAGCTAAAGAACTATTGGCTGAAAGACGAGAAGAAGAAAA 1149755 37 100.0 43 AAGAAGAAAA ..................................... TAGTGATGAGCAATTAGCTCGTTTAGGTGAAAGAGTGGTAGTT 1149835 37 100.0 AGTGGTAGTT ..................................... GATAGAATAGA ========== ====== ====== ====== ========== ===================================== 4 37 42 GTTTCCGTCCCCTTACGGGGTAAATGAGGAAATTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.05%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [614,1364] Score: 0.18/0.18 # # Final direction: R [0.27,0.55 Confidence: MEDIUM] >NC_019776 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3180046 37 100.0 35 NNNNNNNNNN ..................................... TGGTTCTTCAAGTTCTGGCGGTTCTTTGATTTCTG 3180118 37 100.0 38 NNNNNNNNNN ..................................... AACAGCAGAACTGCGATAACCAGAAGAAATTATTACAG 3180193 37 100.0 34 NNNNNNNNNN ..................................... TTCCATAAATTACTAACTACTTTTGTTACAACTA 3180264 37 100.0 37 NNNNNNNNNN ..................................... TCAGATAACATTTCACTAAAGCCTTTAGCACTGGTGA 3180338 37 100.0 38 NNNNNNNNNN ..................................... GGCTTCAGCCCACGTCAAGGCTCTTTCCCATGTGCCGA 3180413 37 100.0 35 NNNNNNNNNN ..................................... TAGAACACCCCATGAGCAAAACCCAATGGAAAAAT 3180485 37 100.0 37 NNNNNNNNNN ..................................... CTACCTCTCTCCATTTATAACCAATGCGAATTTCCGT 3180559 37 100.0 33 NNNNNNNNNN ..................................... GCAGTCGTAGGAAACTGCTTCTAACCAACGATT 3180629 37 100.0 35 NNNNNNNNNN ..................................... GCTACTACTGTGCTTTTTTGAGCAACCTCATCGTA 3180701 37 100.0 36 NNNNNNNNNN ..................................... TTTGTTTTCATCATAATAAATAGCTTCATAATTGGT 3180774 37 100.0 34 NNNNNNNNNN ..................................... CAAACAGTGCCTATAGGTTATGCACAACTTGTTA 3180845 37 100.0 34 NNNNNNNNNN ..................................... TTCCTCCCAATTATTTAATGCGATTCTTCTGGTT 3180916 37 100.0 33 NNNNNNNNNN ..................................... AAGTACTCTTGAGACTTCTCTACCAATTCTTTT 3180986 37 100.0 35 NNNNNNNNNN ..................................... ATTATCTAAATCTAATAAAGAGTTTGACGATTTTA 3181058 37 100.0 37 NNNNNNNNNN ..................................... CACCTCCAGAAGGCATAGAGCTTAATTTTCTTCCTTT 3181132 37 100.0 34 NNNNNNNNNN ..................................... AACCTTCGCCTTCTTTCTCCCCCAATTAAGATGC 3181203 37 100.0 35 NNNNNNNNNN ..................................... CTATTCCTCCTTTTTATTTCGATTATCATCCTCAT 3181275 37 100.0 36 NNNNNNNNNN ..................................... ATTTAACAAAATCATTGGAGAATTAAATTATGAGCT 3181348 37 100.0 43 NNNNNNNNNN ..................................... AAAGTTTTGTTGCTTCAAATTTAATTATAATTTAATTATATGG 3181428 37 100.0 39 NNNNNNNNNN ..................................... CCAAATCCTTGATTCCCTAGCTGATTAGCTGTATTTAAA 3181504 37 100.0 36 NNNNNNNNNN ..................................... TCTAACTCAATCCCTCAAGGGCAGTCGTCTTGTCAA 3181577 37 100.0 33 NNNNNNNNNN ..................................... ACATTCTGGACAATAATGAATAGCCCAATCACA 3181647 37 100.0 36 NNNNNNNNNN ..................................... AATTATGCTACTTTTAAAGGTTAATTCTAACCATGA 3181720 37 100.0 36 NNNNNNNNNN ..................................... AATTTTAAACGAGTTCATTGTGCAAGGGTAAATACC 3181793 37 100.0 33 NNNNNNNNNN ..................................... GCCCCCCAAAGCAATAGTAGTTTTTTCAATTCT 3181863 37 100.0 35 NNNNNNNNNN ..................................... TTGACTCCAAAAGAAGACGCTCCTTACCCCATTGA 3181935 37 100.0 37 NNNNNNNNNN ..................................... CTGATTGTGACGGATTGTGACTAATGTGACGGATGGG 3182009 37 100.0 35 NNNNNNNNNN ..................................... ACCAGAATTTTTCTTTAACCAATTTTCCCCCGAAT 3182081 37 100.0 35 NNNNNNNNNN ..................................... GAAGATAAAATAAATTTGCGCCCAGTGATTGAGGT 3182153 37 100.0 36 NNNNNNNNNN ..................................... AGTACAATTACTTGATCCCCCACCGAGGGCATGGAG 3182226 37 100.0 32 NNNNNNNNNN ..................................... GCTTCATCGGGATTGACCAAACCACAATTATT 3182295 37 100.0 35 NNNNNNNNNN ..................................... AGACCCTAGACGCTTATTTAAAACTCAATTTAACA 3182367 37 100.0 33 NNNNNNNNNN ..................................... TTTCTTGTCGCATCAGGACATAAAATGTTTCGT 3182437 37 100.0 36 NNNNNNNNNN ..................................... TTTTTATTAGTTTTGAATCTCTGTGCTAATTTACCA 3182510 37 100.0 38 NNNNNNNNNN ..................................... ATTAATTGGATAGACCATTTCAACCTCCGTATTTGTGT 3182585 37 100.0 36 NNNNNNNNNN ..................................... GTTCCATATCCTCAACTTGACGAGTAATAGCAGTCC 3182658 37 100.0 36 NNNNNNNNNN ..................................... GAGGGCATAATCAGGACAATTATCAGGACATACTAT 3182731 37 100.0 1 NNNNNNNNNN .........................CATT.G.T.G.A NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 38 37 35 GTTTAAACTCTAATTAATACCTATAAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.97%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.80,-0.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [231,348] Score: 0/0.18 # # Final direction: F [5.28,0.27 Confidence: HIGH] >NC_019776 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3183114 37 100.0 37 GTAGCCTTAT ..................................... ATCGCACACACCCTAATAACTATGAATAAACATGATA 3183188 37 100.0 37 AAACATGATA ..................................... ACCAAGCGAAAAAGATACTCGTCATACCCGTCACCAT 3183262 37 100.0 35 CCGTCACCAT ..................................... TAGCTTTTAATGCATAATTGACACTGCGATCCGTC 3183334 37 100.0 38 GCGATCCGTC ..................................... TACGGAGCGCAATCAAGAGGCAAAACAGCCGGGACAGT 3183409 37 100.0 35 CCGGGACAGT ..................................... GAGAACACCACCGCCTCATCGGCTGATTGTCGAGC 3183481 37 97.3 ATTGTCGAGC ....................T................ GCATTTTCCG ========== ====== ====== ====== ========== ===================================== 6 37 36 GTTTAAACTCTAATTAATACCTATAAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.97%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.80,-0.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [419,136] Score: 0.18/0.18 # # Final direction: F [5.46,0 Confidence: HIGH] >NC_019776 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 4074105 37 100.0 39 ATATCACTGT ..................................... TTCGACACTAATAGTTCTGTTTAATTCAACAGGGGAAGA 4074181 37 100.0 47 CAGGGGAAGA ..................................... AAATCTAAGATAATGAGCAAAACCGTAATCAAAAGAGATGGCAGAAA 4074265 37 100.0 40 ATGGCAGAAA ..................................... CCAACTACCGCTCAGTAATATGAAACTTAATCATAACTTC 4074342 37 100.0 45 TCATAACTTC ..................................... TTCCCCAACGATTTTATCTACGGCTGCTTTAAGACGTGCAACGCG 4074424 37 100.0 GTGCAACGCG ..................................... GGCTCAGA ========== ====== ====== ====== ========== ===================================== 5 37 42 GTTCGATTCCACATTTACCCCGTAAGGGGACGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [10,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.10,-6.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [70.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [920,51] Score: 0.18/0.18 # # Final direction: F [1.19,0 Confidence: HIGH] >NC_019776 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================================== ====== 4073709 38 100.0 36 TAACGGCTAG ...................................... TTTACTTAAGTTTGCGGAATCTCCTTATATTGGTGG 4073783 38 100.0 34 ATATTGGTGG ...................................... ACTAGTTCCTTAGCTTCCGTTTGTTTTGCATCGA 4073855 38 97.4 40 TTTGCATCGA C..................................... CTTTCGCTTGAAATCCCAAGAACTCTGCACACCCTGCAAA 4073933 38 100.0 ACCCTGCAAA ...................................... TTTCACCTGTCCT ========== ====== ====== ====== ========== ====================================== 4 38 36 GGTTCGATTCCACATTTACCCCGTAAGGGGACGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [10,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.10,-6.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [524,541] Score: 0/0.18 # # Final direction: F [1.15,0 Confidence: HIGH] >NC_019776 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 4113500 37 100.0 35 TACCAAACAT ..................................... AAAAGATAAAAGGAGGTGAGTTAATCCACTTAAAA 4113572 37 100.0 32 CCACTTAAAA ..................................... GAAAAGTTGCAAGGTTTAAAAGGTTGCTTACG 4113641 37 100.0 34 GTTGCTTACG ..................................... GGGATAGACTTAATTAAAGAATTTGAGGGCTTTA 4113712 37 100.0 35 GAGGGCTTTA ..................................... TGGTTAAAGCGATAAGTATTATTGTTTTTATCCCA 4113784 37 100.0 38 TTTTATCCCA ..................................... ATTACCATCGCCATCAACAATATATTGCTTATTAATCG 4113859 37 100.0 35 TTATTAATCG ..................................... CCGATGATTTTAGATTTGAAAAGTGGAAGCGACTT 4113931 37 100.0 GAAGCGACTT ..................................... AACTTTTTCA ========== ====== ====== ====== ========== ===================================== 7 37 34 GTTTCAATCCCTAAGAGGTATTAATAAGAGTTTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.27%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.40,-1.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [88,134] Score: 0/0.18 # # Final direction: R [0,4.87 Confidence: HIGH] >NC_019776 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 54 37 100.0 34 GTACAAGCGA ..................................... GTTCTAGCCGATATTTTCTCGTCAAACCATTCGT 125 37 100.0 37 AACCATTCGT ..................................... TGACGATGTGATCGGTGAATTGGAAGCTCACATTCAA 199 37 100.0 35 TCACATTCAA ..................................... TTTGGATTATTGGGATTAGTATTGGGATTGGGAAT 271 37 100.0 34 GATTGGGAAT ..................................... GTACAATACAGTTATACAACTAAGTAAAAAGGTA 342 37 100.0 35 TAAAAAGGTA ..................................... AGGAACTACTAAAGTAAGAATAGAAATAATATCTT 414 37 100.0 33 ATAATATCTT ..................................... AGTAATAAGAGATTGGAAAATTTTGCGAAGTTC 484 37 100.0 36 TGCGAAGTTC ..................................... ACTGCAAAAGATGAAGCCTTGAAAAAAGGCAGTGAA 557 37 100.0 35 AGGCAGTGAA ..................................... TAATTGATAATGACCCTGCTGGAGAAAAAAAAGCC 629 37 100.0 35 AAAAAAAGCC ..................................... TTACATAAAAGGAGCAGAAGAAGGCATAAAAATTC 701 37 100.0 36 ATAAAAATTC ..................................... ATCAAAAAGCCAATCAATATCAGTATTAAATCTGCA 774 37 100.0 TAAATCTGCA ..................................... CGCCCACGAT ========== ====== ====== ====== ========== ===================================== 11 37 35 GTTTCAATCCCTAAGAGGTATTAATAAGAGTTTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.27%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.40,-1.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [6.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [55,333] Score: 0.18/0.18 # # Final direction: R [0,5.32 Confidence: HIGH] >NC_019777 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 14329 37 97.3 37 AATGCTTAAC -.................................... TCCTTCAGTTTGAGTCTGATACAGTTCCTTGTACCAA 14403 37 100.0 39 CTTGTACCAA ..................................... TGCCATTAATGATTACAGCTGGGAATAGTTTAGGCAAGA 14479 37 100.0 38 TTAGGCAAGA ..................................... CCATATCATCAAAGCGGCGTGTGAATAAAGTAAATGCC 14554 37 100.0 37 AGTAAATGCC ..................................... GTGAAGATGACGTCATCTTGATTAACTCCCACCAAAG 14628 37 100.0 CCCACCAAAG ..................................... TAACTAATTTT ========== ====== ====== ====== ========== ===================================== 5 37 37 GGTTTCCATTAATTCCACTACCCATAAGAGTAGCAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.16%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [253,581] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_019777 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 32652 36 100.0 34 NNNNNNNNNN .................................... TAAGTTTTGTTTTACTAATCCCCCAATGAATTAG 32722 36 100.0 37 NNNNNNNNNN .................................... GATATATATCTATATCTCCCTGCGATTATTAAACAGT 32795 36 100.0 39 NNNNNNNNNN .................................... TAGTTTTTCAGCCTCAACACGGGCGGTTTCCTGAGTTAG 32870 36 100.0 41 NNNNNNNNNN .................................... CGTAAAGAGGGTTTGTTCTCTTTAGTGCTAAACGGTAAACA 32947 36 100.0 38 NNNNNNNNNN .................................... AAGCACATAATGTAACTTTGGTGGGAGTTTATCAAGAT 33021 36 100.0 39 NNNNNNNNNN .................................... TGACCTGACCGCGTAGACCCTCGATAGCAAAAAACTTCT 33096 36 100.0 39 NNNNNNNNNN .................................... ATAGCCCCTGTTATAGCTTCATAAAAAGGAAAGAAACTC 33171 36 100.0 42 NNNNNNNNNN .................................... CAAACACGCTAGTTAAGATATCACTAGCTAAATGCTGTACAG 33249 36 100.0 45 NNNNNNNNNN .................................... CTGCATCGGAATATCATTACCTTGGCGAACAGCATTGATAGTATC 33330 36 100.0 39 NNNNNNNNNN .................................... TGATATGCGATCACTATACACGTTCATCTCAATCACTGC 33405 36 100.0 35 NNNNNNNNNN .................................... TAGAAGGCAATCGTGACATCTTCAGCTTATCCCAT 33476 36 100.0 48 NNNNNNNNNN .................................... TTAAAAGCCCAATTAGCAAATTCAGTATCTCGCGAAGAGTTTAATGAG 33560 36 100.0 42 NNNNNNNNNN .................................... AAGAAGGCTTGGTGTTGCTGAACTAGCTCTGCTATAGCCGGG 33638 36 100.0 36 NNNNNNNNNN .................................... TTCATACCAACTTGTATCTTGGCAAGAAAAGTTTAT 33710 36 100.0 36 NNNNNNNNNN .................................... CTAAGTTTTTATTACTACCTATGATAAAGGCATTCG 33782 36 100.0 39 NNNNNNNNNN .................................... GCAATTAGATGCAAACCCTGAATTGGTTGACAAATTAAA 33857 36 100.0 40 NNNNNNNNNN .................................... CATATCCGCGTCCTCATCGAAAGTCATCCCTTGGGTGAGA 33933 36 100.0 37 NNNNNNNNNN .................................... CTCCAAGTTAATCAACAATATTGATTTGACGTTTAAA 34006 36 100.0 37 NNNNNNNNNN .................................... AACTTGCCCATTCAGAAGGTACGGGCTTAAATTTACT 34079 36 100.0 38 NNNNNNNNNN .................................... TCAACATTGCGCTCTGTTGTCTTTAAGGTGGAGGCAGG 34153 36 100.0 43 NNNNNNNNNN .................................... AAATATCGTAACAGAGTTCTGGAGAATAGATAGGTAGCAACTG 34232 36 100.0 40 NNNNNNNNNN .................................... TGAATTTAAGAATATAGTGGGATATCCGCCAGAAGCAGCC 34308 36 100.0 42 NNNNNNNNNN .................................... AATCTCTTCTTCAGTTTTCTGCTCTGCCTCGGCTACTTTATC 34386 36 100.0 37 NNNNNNNNNN .................................... GAGGTATATCCCCACCTTTAATAACATCAGCATTAAT 34459 36 100.0 39 NNNNNNNNNN .................................... CTTCATACCCTTTTCTTCTTGAGTTAAATCAGCCCAGTT 34534 36 100.0 37 NNNNNNNNNN .................................... AATCCAACAGTCTCTGGGCAATTAGCATGTAACCAAT 34607 36 100.0 40 NNNNNNNNNN .................................... TTAGATCTAGGTGATACAATTCATCTGGACGCATAGATTT 34683 36 100.0 40 NNNNNNNNNN .................................... TTTAGAAGTAATAGTAGAATTAACAATAGCAGATTTACCG 34759 36 100.0 38 NNNNNNNNNN .................................... CCATAGCTCCTCTTTCGAGGAGGCTGAATTATTAACCA 34833 36 100.0 38 NNNNNNNNNN .................................... GCAGTCATATAAAGCTGTACAGTCTCGTGGGAACTAGA 34907 36 100.0 40 NNNNNNNNNN .................................... CTTAGACGAGTTGAGGATAGCTTGCCAAGAAAAAGAAAAA 34983 36 100.0 38 NNNNNNNNNN .................................... TAAAGATAATGCGGTTTCATAATCTCCAGCAACACTAC 35057 36 100.0 39 NNNNNNNNNN .................................... AGGTCGTCCTCCTGAGTTGCCATCTCCTCGAGAATAAGA 35132 36 100.0 40 NNNNNNNNNN .................................... ACATGGCTAACGTTGCCGTCACTGGAGAGAACGGTCTATT 35208 36 100.0 42 NNNNNNNNNN .................................... GCACATGGCAGCGTCATCTGCTAAGTCGGAATATTTTTCAGG 35286 36 100.0 46 NNNNNNNNNN .................................... AGGTTGAAAAAGAAGTTAAGGGATTTACTGTGTTCGTGCCATTAAC 35368 36 100.0 37 NNNNNNNNNN .................................... AAATAAATCTTTTCAGTTCGAGTATATTCGTCCTCGG 35441 36 100.0 36 NNNNNNNNNN .................................... TTTATTTCATCGTAGCTAACAGTTACTACATAATCA 35513 36 100.0 44 NNNNNNNNNN .................................... GTACCCAGAAACAAATCCAAGCATGAGCACCTGTACTACCTGCC 35593 36 100.0 38 NNNNNNNNNN .................................... TCAATATTGGTATCGTTGTTTTGTTTAACAATGAAAGG 35667 36 100.0 38 NNNNNNNNNN .................................... TTTATTGAGAGATGATCATCAGTTTATTATTATTTAAG 35741 36 100.0 40 NNNNNNNNNN .................................... CGTTCATATCTATGAACTAAATAAAGTACATAAAAAAGAA 35817 36 100.0 41 NNNNNNNNNN .................................... AAGGCTTCGATGGTTTTAGACGAAGCTTTTTCGTTAACGCA 35894 36 100.0 34 NNNNNNNNNN .................................... TTGGGATTATAACGATAACACGCTATGTAATTAT 35964 36 100.0 1 NNNNNNNNNN ...............G.......CGATGT.TTGTCT NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 45 36 39 CTCTCCCTTAATGGGAGAAACTAATTGAATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [170,1464] Score: 0.18/0.18 # # Final direction: F [0.78,0.18 Confidence: MEDIUM] >NC_019778 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1195529 36 88.9 46 TCGGAGGGTA -.....C.C...................A....... TTGAACACCCAATCAGCCTACTGGTTACTCAAATTCCTAAAGGGCA 1195611 36 97.2 40 CTAAAGGGCA ............................A....... TTCCTACTTACTGGGAGGGGGTAGCATTATGCTCCGGTCC 1195687 36 97.2 41 GCTCCGGTCC ............................A....... AGTGAACCAGAGTGTCGTCGTACCAACCCCAAAGATAAAAT 1195764 36 100.0 43 AAGATAAAAT .................................... CCCATAGTTATGAGCTACAAGCGGAGCAGGCTAAGTCTCAAGC 1195843 36 100.0 39 AGTCTCAAGC .................................... AAGCAACCTAGTAAGCGTTGTAGTAAGTCGGGGTCTTGG 1195918 36 100.0 42 GGGGTCTTGG .................................... GGAAGCGGAGGCCGCCCGAGAAGAACGTGAGACGCTCGAGTG 1195996 36 100.0 42 CGCTCGAGTG .................................... TGAACTCTCTAACCCTGTAGGAAACATCGAGGAGCATGATGT 1196074 36 100.0 36 AGCATGATGT .................................... CTTTCAAGCAAAAGTAGTCAGTAAAAAAGATCCTTA 1196146 36 100.0 46 AAGATCCTTA .................................... CTGTACCTTTTCCTACATGAGTAGTTAAATATCCCGCAGAAGTCGT 1196228 36 100.0 CAGAAGTCGT .................................... CCCCCTATTT ========== ====== ====== ====== ========== ==================================== 10 36 41 GTTTCCAATAATTCCACTACCCCGAAGGGTAGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [10,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.50,-6.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [368,181] Score: 0.18/0.18 # # Final direction: F [0.82,0.78 Confidence: LOW] >NC_019779 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1442117 36 100.0 41 NNNNNNNNNN .................................... AAGTGTCTAACACCACTTATAACATTTCTGTTAATCATTAA 1442194 36 100.0 40 NNNNNNNNNN .................................... AACAATCAAGAATACATCAAAGCTAATTCAATTGCTTCAG 1442270 36 100.0 35 NNNNNNNNNN .................................... AAAATAGTTCAACATTTTTTCTAGATCATCATAAG 1442341 36 100.0 38 NNNNNNNNNN .................................... CAAGTCTTTATCCCCTGTATGAGAGGCGACTTCCGCGA 1442415 36 100.0 40 NNNNNNNNNN .................................... TTTGCATTTGGTGTTTATTACAGAGGTAAAATAGCTTGGT 1442491 36 100.0 43 NNNNNNNNNN .................................... ACTTTAGCCTAGAAGAAAACGAACCGATTGACGGCTATGCGCC 1442570 36 100.0 39 NNNNNNNNNN .................................... TCATAATGCTTCCAGTCTGGAATGCTCAGGGCACCCGAT 1442645 36 100.0 36 NNNNNNNNNN .................................... ATTCGGAAGATGTAGTGGGAGTAGGCTGGTTACTTA 1442717 36 100.0 37 NNNNNNNNNN .................................... CTCTAACATAACCCGCCTCTATGAAGAGGACGAAGAA 1442790 36 100.0 39 NNNNNNNNNN .................................... TTTAAGGAGGTGGACTGCTCCTTTAGCAGTCTTGTGAAT 1442865 36 100.0 37 NNNNNNNNNN .................................... TTCGGGTTGTCTTGCCAGAGGGCATCCCCTGCGGGAA 1442938 36 100.0 39 NNNNNNNNNN .................................... AACTCTGATAACCAGATTCTCGGGATGATCGTCGATGCG 1443013 36 100.0 41 NNNNNNNNNN .................................... CCCCACTGCTACCTCAAACGAGGTGACTGTAGGTGGTATTG 1443090 36 100.0 36 NNNNNNNNNN .................................... TGTCCCTCCGAGGTGATTGAATACCCATCAAGAAAT 1443162 36 100.0 37 NNNNNNNNNN .................................... GTCCATCCTGAGAATAGAAATCATTAGAATCGGACAG 1443235 36 100.0 38 NNNNNNNNNN .................................... GTTTTCACCTCCTCAGGCGTTATATATTCCCTCTCATA 1443309 36 100.0 41 NNNNNNNNNN .................................... CTCCAAAGTAAATAGTGATAGGGCTGCCCGTTCCTTCTGGG 1443386 36 100.0 38 NNNNNNNNNN .................................... CTCTAAGTCCGCCTTCATCAGCCAATTGGCTCAGGCGT 1443460 36 100.0 40 NNNNNNNNNN .................................... ATAAGGAATAAGATCCTTTGGCCATTGACAGTAGTGGCTA 1443536 36 100.0 37 NNNNNNNNNN .................................... ACTTCCGCTTGGAATAGAAGTTCGTCTTATAGACGAG 1443609 36 100.0 38 NNNNNNNNNN .................................... CGCGGCGAGATATTGGTCACGCTCCTCACGGGAGGAGA 1443683 36 100.0 40 NNNNNNNNNN .................................... AATTCGTACCAGAAGAAGTCGAACGACTTTTCAACCTCTT 1443759 36 100.0 36 NNNNNNNNNN .................................... CTCTGCTAACTCGATCGTTGACAACTGAGCTACCTT 1443831 36 100.0 39 NNNNNNNNNN .................................... CTTTTTTCTTACCTCCTACAGGCTTATCTAAGCTTAGTT 1443906 36 100.0 40 NNNNNNNNNN .................................... GTCTCTGAGAAGCATTCCCACACGAAGTACGGCGCGCGGT 1443982 36 100.0 38 NNNNNNNNNN .................................... AGGAATTTGTTGTCTTAAAGACTGATTTATTTCTTCTA 1444056 36 100.0 36 NNNNNNNNNN .................................... TTCGTAAATGAGGCGACCTTCGTTATCGAAAGAGTT 1444128 36 100.0 35 NNNNNNNNNN .................................... TCCTTTCTCTGCCACGCAAATGGCAGAAGTCCGAA 1444199 36 100.0 40 NNNNNNNNNN .................................... CTATTAAGCGTGTGCCTCCGCCGCGGTTTTCACCGCCTAC 1444275 36 100.0 46 NNNNNNNNNN .................................... TCCTACGGACTAAAGTTCGTTGCCTAAGCCTGTAGGAGGTAAGAAA 1444357 36 100.0 38 NNNNNNNNNN .................................... GGTCTGCCAAGTCAACATGGAGCTTATGTGTTTCGTAT 1444431 36 100.0 35 NNNNNNNNNN .................................... ATTTGTAGTGTCCACCCAGTTTTGTACAGCTTGGT 1444502 36 100.0 43 NNNNNNNNNN .................................... CCTTAGGGCTGCTCCACCGAACGAAGTTGTCCCGTACAGTGTA 1444581 36 100.0 35 NNNNNNNNNN .................................... TCGCCCGTTTCCGTAAGAAACGAACTGTATCACCT 1444652 36 100.0 41 NNNNNNNNNN .................................... AAGCGGACAAAGTGGCAAAGGCGAACGAAGAAGCCTTCGAT 1444729 36 100.0 40 NNNNNNNNNN .................................... TCTACTTTACTACCGTAGTGAGCAGCAATCTTTTCAAGGG 1444805 36 100.0 40 NNNNNNNNNN .................................... ATGCGTTGTATTGTTTATATAGAGACCGTTATTTAGAGGT 1444881 36 100.0 35 NNNNNNNNNN .................................... TTCTCAAGACGGAGAGTTTGACACTATTGATACAG 1444952 36 100.0 42 NNNNNNNNNN .................................... TTCGTCCGAAACGGACTCTGTAAAGGATAACGTTCATAAGTG 1445030 36 100.0 42 NNNNNNNNNN .................................... CGATAGCCCTGCCCCATATGGGCGACTCCTTTACAGGACTTC 1445108 36 100.0 36 NNNNNNNNNN .................................... CTGTTCGTCCTCAGAGCGAGAGCAAGAGATAACGAA 1445180 36 100.0 38 NNNNNNNNNN .................................... ACATTCGATTCGTCTTACTTTATCCCGACTGTCGAGAT 1445254 36 100.0 40 NNNNNNNNNN .................................... TAATCTTTTCCTTCAGATCGCCGATTGGCTTGCTGTATTT 1445330 36 100.0 41 NNNNNNNNNN .................................... TGGGCGTGTCTTCTGGGAGCTCATACCCAATATGGGGAGCA 1445407 36 100.0 39 NNNNNNNNNN .................................... TAGGAATTACTGCTGGAAAGGTTCCAGTTAATCCATGGA 1445482 36 100.0 36 NNNNNNNNNN .................................... CTGGATGAGATGAGCCTTAAAGGAAATTGCTTCCTG 1445554 36 100.0 33 NNNNNNNNNN .................................... CTAGAAACTCATCTCCCCAGAAAGCTTCTTGGG 1445623 36 100.0 40 NNNNNNNNNN .................................... CGTGCAATCTCTTCTTCAGGGTCTTTTGTTGTCTTAGGCT 1445699 36 100.0 39 NNNNNNNNNN .................................... TCTGGAATAAAAAGTCGATTTTGAACGCAATGTCCAAGA 1445774 36 100.0 39 NNNNNNNNNN .................................... AGTTACTGCCACAGTAGTAGCAGTCGTGCCCCATGCGGT 1445849 36 100.0 38 NNNNNNNNNN .................................... GTAGAAGGTTCTTCCTCTACTCCTTCATCTTCAGGAAT 1445923 36 100.0 38 NNNNNNNNNN .................................... GAGGTATTTCTTGAACTCTTTCAAAGCCCAATCATACA 1445997 36 100.0 48 NNNNNNNNNN .................................... CTGAGACAACCCTCGGAGGGTCTTTGCTTTGCCTGATTCATTCATAAC 1446081 36 100.0 40 NNNNNNNNNN .................................... CATTTGGTTGTTGGAGAAAGTTTGATTGGTCATGGTAAGT 1446157 36 100.0 36 NNNNNNNNNN .................................... GTTCAGCCCCTCTCCTTAAGTGCATAGATATTTCAA 1446229 36 100.0 38 NNNNNNNNNN .................................... TCGACTCCCTTGAGTCTCGGGGGTTAGACCCAAAAGGT 1446303 36 100.0 40 NNNNNNNNNN .................................... AAGTCTAACAAGGATAACGGAGGGTCTGCCCACATTGGTT 1446379 36 100.0 39 NNNNNNNNNN .................................... TCGGTCACTCGCTGACCTTTACCGTTAGTAGCGAAGAGA 1446454 36 100.0 40 NNNNNNNNNN .................................... CATTATAACCCACTTCTCGAATCAAAGAAGTGTCACTGTA 1446530 36 100.0 41 NNNNNNNNNN .................................... AACGGGAGCTTTTAGACCTAGCTAATACCCTTCTCCTCTCT 1446607 36 100.0 37 NNNNNNNNNN .................................... GGCATTTATATTGTTTCTGATCCAGGTAGCAATACAG 1446680 36 100.0 42 NNNNNNNNNN .................................... ATGTAGAGAATAGTTTATACAAAGACTACGTAGACTATTACT 1446758 36 100.0 40 NNNNNNNNNN .................................... AATACTTTCACCACATAGCTATAATGGGCTGAGGTCGATA 1446834 36 100.0 37 NNNNNNNNNN .................................... TTCTCCCTCTTCGAGTGGTACGGCAGGCGTCCACTCA 1446907 36 100.0 38 NNNNNNNNNN .................................... AACTCAAATGAGAGCTCAAGGTTTGGAATTGTCACCTC 1446981 36 100.0 40 NNNNNNNNNN .................................... TAACGATGTCCAAATCAGTAAACTCTACAAATTTAGACTC 1447057 36 100.0 39 NNNNNNNNNN .................................... TCGCTGCCGCTATCCTCTCGTTCCTAGTGGGAAACCTAA 1447132 36 100.0 39 NNNNNNNNNN .................................... TTAGTCAGGGATTTGAGTAGGGGTTTTCCGCTTTTTAGG 1447207 36 100.0 36 NNNNNNNNNN .................................... CTAAACTTAAGAGTAAGACAAGACCATTAAATACAG 1447279 36 100.0 36 NNNNNNNNNN .................................... GAGAAGAGTTAGGTCTTCTTCCTCTGTCTCTTCTTC 1447351 36 100.0 40 NNNNNNNNNN .................................... ACTACCACGAGGGGTAGTTTAGTTAAAATGTATATTCCCA 1447427 36 100.0 39 NNNNNNNNNN .................................... CTCTACGAAATTGCCTTGAGGGATTACTGTGAACATTGT 1447502 36 100.0 38 NNNNNNNNNN .................................... CTCCAAAGAACTCCTTCTCAATGCGAGTATTTACTCTA 1447576 36 100.0 38 NNNNNNNNNN .................................... AATTGAGCTTTAGCTTTGCCTTTGGCATTATGTTGGAG 1447650 36 100.0 36 NNNNNNNNNN .................................... TTCATACACTGCAAGTTGGTAATCCGTAAGGATTTC 1447722 36 100.0 38 NNNNNNNNNN .................................... AGCTAAGCCATCTCGTCCCTTCTTCTTTATACGAGCTA 1447796 36 100.0 36 NNNNNNNNNN .................................... TTAATTTTGGGACGACTTTCTTTTTCCATACCTTTA 1447868 36 100.0 37 NNNNNNNNNN .................................... TCGTTCATAGTGAGTGTCAGAATGTCTTGGATCATTT 1447941 36 100.0 45 NNNNNNNNNN .................................... TCGTCATTTCTTCTTCATCCACTTCCCAGACGGTGGCTGACTTGG 1448022 36 100.0 37 NNNNNNNNNN .................................... TTTGATTGCCCTCCTTGGGCTTAAATTTGTCACTTAA 1448095 36 100.0 39 NNNNNNNNNN .................................... AACCCGTCACTTAAAAAAGCCAGCCCCCTCGAAAGGGGG 1448170 36 100.0 40 NNNNNNNNNN .................................... TCCTGAGAATAAAAGTCGTCAGAATCGGACAGTAGCTCAA 1448246 36 100.0 35 NNNNNNNNNN .................................... CCGAAGAGAACCATGGAATCCAACCCATTCTTGCC 1448317 36 100.0 40 NNNNNNNNNN .................................... GACAGCTCTACTCCTTGGAAGGATACTTGACTCTCCCCTA 1448393 36 100.0 36 NNNNNNNNNN .................................... AAGACAGCTCGACGGGCTTTGAGCGTTAAAGCTACA 1448465 36 100.0 41 NNNNNNNNNN .................................... TTCTCAAGAACTCTAGGTAGAGATCCAAATGAAACTCGTAA 1448542 36 100.0 37 NNNNNNNNNN .................................... AGTGTGAACCTGCTCGTTAGGTTGCTCTTCCACAAAA 1448615 36 100.0 42 NNNNNNNNNN .................................... ACCTTTATTAAGCTGTGGGAAAAGGTCTATAACCCAGATCGA 1448693 36 100.0 39 NNNNNNNNNN .................................... AGCCTCTCCCAAGTCGTCGTAATGCTCCCCGACTTCTCT 1448768 36 100.0 36 NNNNNNNNNN .................................... CTCTATAGCTCGTTCCCAAGCAGCGTATCCGAGGCG 1448840 36 100.0 37 NNNNNNNNNN .................................... CAAAAGAGTCTAGTTGGGAAGCTAGGTAGGGAAGGAA 1448913 36 100.0 35 NNNNNNNNNN .................................... TTCTTCCACCACTTGGTACAACAAGACACCCACAC 1448984 36 100.0 39 NNNNNNNNNN .................................... TATGTTCATCGGTAGACTTTCAGGATGGCAACACACTAT 1449059 36 100.0 38 NNNNNNNNNN .................................... TGGGAGGAAGACGAAACTATATATCGTCACCTAATATC 1449133 36 100.0 37 NNNNNNNNNN .................................... TATTAATCATTTGAGCCTCGTTAGCGTTGTTGTTCAT 1449206 36 100.0 41 NNNNNNNNNN .................................... AACAATAAACAATAAGAGGTTCAACACTCAATTATGGGTAA 1449283 36 100.0 37 NNNNNNNNNN .................................... CGCAGAGTATTGGTACTGATCTGGATCTTTGGGGTCT 1449356 36 100.0 38 NNNNNNNNNN .................................... ATTAGAAGAAGTATCGCCATCTTCTCTATGTTGAGGGC 1449430 36 100.0 35 NNNNNNNNNN .................................... TTTCGTATCGAATATCATAACAAACCATCATCCCT 1449501 36 100.0 38 NNNNNNNNNN .................................... ATTTAACAGAAGCGTTAGAGGAGACTGAGTGGAAGCAG 1449575 36 100.0 39 NNNNNNNNNN .................................... CGAAAAGCGGACGGGTAAAAAGGTTCAAGTTCTCTGGCC 1449650 36 100.0 37 NNNNNNNNNN .................................... AAGGATATTCCAGTGTATGGGTTTGAGGTAGATTTAG 1449723 36 100.0 36 NNNNNNNNNN .................................... TAGGGGATTGAGAGAGGTCAAAAAGATTGAAGTTAG 1449795 36 100.0 38 NNNNNNNNNN .................................... TTCTTTAGGAAGCTTAGGAGCTTCAAGAGGTTGGGTAT 1449869 36 100.0 41 NNNNNNNNNN .................................... ACCGTCTTTCACAATGAAAAGACTGGAAACTCCAGTCAACA 1449946 36 100.0 38 NNNNNNNNNN .................................... AATACTTGATGGTCGTCGCTGTCTCGGTCGACGACGAG 1450020 36 100.0 36 NNNNNNNNNN .................................... GAAGGTCTGCTGAGATATAAGACCCCGTTAGGTCTT 1450092 36 100.0 40 NNNNNNNNNN .................................... TTCATTTCGCATCTGAAATCCTTCTTCCATCGGTCTTTTA 1450168 36 100.0 34 NNNNNNNNNN .................................... TTGCCAAGCGCTATGCTCCTAATGAAGAGTTCAT 1450238 36 100.0 44 NNNNNNNNNN .................................... AGTTTGGATCGGTAAGAGTTTCACTCAAACCAAAGATAATAGAT 1450318 36 100.0 37 NNNNNNNNNN .................................... CAACGAGGTCAACTGCCTCTTGCTGCTTCTGGTTTAA 1450391 36 100.0 40 NNNNNNNNNN .................................... ATGAGACAGTAAGCTGCTCGACCCGCTTTGTCAGAATCAT 1450467 36 100.0 38 NNNNNNNNNN .................................... CTCTATCACCTCCTCAAGGGAGAAGGGTTTTTTCTCGG 1450541 36 100.0 37 NNNNNNNNNN .................................... ATTTGTTCTTCGTTTCCGTTAGTGTTTACGTTGTTCA 1450614 36 100.0 40 NNNNNNNNNN .................................... TTTTTGGAAATCTCCTTCAAACGGAGTTCCAAAGCTTTAG 1450690 36 100.0 38 NNNNNNNNNN .................................... GTTAAACCTTCTTCTTGAAAGTAGCTGTAGATGGCGTG 1450764 36 100.0 37 NNNNNNNNNN .................................... TTGATCCATTTTCTAGGACCAATCGCTGATAATTTAC 1450837 36 100.0 38 NNNNNNNNNN .................................... CATTAGTTACAACAACGGTGTCCTGTCCGTGTTTCGCT 1450911 36 100.0 39 NNNNNNNNNN .................................... TAGAAGGATAAAAAAATGTATCGTTTAATCAACCGTGAT 1450986 36 100.0 41 NNNNNNNNNN .................................... ACGGTCGAAGGCGATCGCGCTCCATCCTTTACAAGATAAAT 1451063 36 100.0 45 NNNNNNNNNN .................................... TCTGAAACTCCCTTAAGCTCCGGCACAGTACCGCGAACTTAAGTT 1451144 36 100.0 44 NNNNNNNNNN .................................... AAAATTGTAAGGCACTGCTGGGAGAAAGAAGGGGTAACTGCTTT 1451224 36 100.0 35 NNNNNNNNNN .................................... TTGAAACGGACCATTCTGTGATTGAGTGCGGGTGA 1451295 36 100.0 37 NNNNNNNNNN .................................... GTATTACGTTCCTCTTTCGAGGAGAAGAGAAGTTTAA 1451368 36 100.0 38 NNNNNNNNNN .................................... TTATTGGAAAATATCAGATGCAATAGAATATAGTTCTT 1451442 36 100.0 35 NNNNNNNNNN .................................... TTGGGTACGTCTTATCGAACTTGCCAAAGAAGGAT 1451513 36 100.0 41 NNNNNNNNNN .................................... GCCAAGTGGTGGGTGTATGATGAAGAGAATCAGCGCCCGAT 1451590 36 100.0 37 NNNNNNNNNN .................................... CGATACGGACTTTATAGAGTAGAATTTTCATTTTTTT 1451663 36 100.0 36 NNNNNNNNNN .................................... AAGGTTTCCATTATTTTCTCCTTTCTGAGGTAAAAA 1451735 36 100.0 36 NNNNNNNNNN .................................... GATGAGAATACTCCTTAGTAGTTGTGTTGTAATGTA 1451807 36 100.0 38 NNNNNNNNNN .................................... TTCTGTTACCGCCTTAGCGAAGTCCAGCAGCGATATTT 1451881 36 100.0 41 NNNNNNNNNN .................................... TTTCTAAAAAACGAATGATGTTGTTTAAATGTCCCTCCTTT 1451958 36 100.0 45 NNNNNNNNNN .................................... CTGTGATCTCTCTACGTCCGATACGTACTTTATAGAGTAAAATGT 1452039 36 100.0 36 NNNNNNNNNN .................................... TGTTGAAGAGCTCGGTGACGCTCGTCCCGCTATCGA 1452111 36 100.0 37 NNNNNNNNNN .................................... ATTTTATAACTGGGAGGTCGAACACGTTGTTCTCCAA 1452184 36 100.0 37 NNNNNNNNNN .................................... GGTCGCCAGCCAAGAAGAACTGAACGTTCTTATTCAG 1452257 36 100.0 38 NNNNNNNNNN .................................... ACGTGGAGTGAGAAATCTTCAAACCCCATGTCTGCTAA 1452331 36 100.0 36 NNNNNNNNNN .................................... CCACCAAAATAAAAGCGGAGGAGGGCGTTCGTCGTC 1452403 36 100.0 44 NNNNNNNNNN .................................... TTTACCTTTGATTGCGTTAAGGATAGGGGATTGAGAGAAGTTAA 1452483 36 100.0 38 NNNNNNNNNN .................................... TCGACTGCTGTATATTGATACTGACCTGGATCTTCGGG 1452557 36 100.0 37 NNNNNNNNNN .................................... AGAGTAGGTCGGCAGTTGTAGGGCGAGTTCCCATAAC 1452630 36 100.0 38 NNNNNNNNNN .................................... TGTCGATTGAGGGCGACAGACGCCTCCCTCTGCCTTGA 1452704 36 100.0 35 NNNNNNNNNN .................................... CCTTGTAGAAAGTTTTCGACTCTCGCAGAGTCTGT 1452775 36 100.0 38 NNNNNNNNNN .................................... TCTATCTCCTCTACTGCTTGATAAATTAGTTCTTTTAA 1452849 36 100.0 34 NNNNNNNNNN .................................... GGGAGATTCGGGAAGGAGCTTTAGATTATATCAA 1452919 36 100.0 42 NNNNNNNNNN .................................... ATCGATGATATTCTTTTCAAATGCTCTTCTAGATACTAAATC 1452997 36 100.0 36 NNNNNNNNNN .................................... TCATTTTCCCATTCATCTAAAGACTTCTGAGTTGGT 1453069 36 100.0 38 NNNNNNNNNN .................................... ATATTAAATGGGATAAATTATCTCAAGGGGCTTACACT 1453143 36 100.0 37 NNNNNNNNNN .................................... TCTCAAGAAGAAGTAGCGAAAAAGTTTATAAATAGTT 1453216 36 100.0 40 NNNNNNNNNN .................................... AAATTTTCATTGTTTTGTCCTCCTTGGACTTTTATTTCGA 1453292 36 100.0 37 NNNNNNNNNN .................................... AGGAATTAACTCCGCAGCCCAGAACCCCAACTCAGGA 1453365 36 100.0 38 NNNNNNNNNN .................................... CAAGCAAATGGGTTAAGCTCTACTTTACCTATTCTGAT 1453439 36 100.0 38 NNNNNNNNNN .................................... ATGAGCAGAACTAAACGCAATCTAACACCAGTGACCAA 1453513 36 100.0 36 NNNNNNNNNN .................................... AGCTTTTATAGTTAGGGCTGTCATGGACAAAGAGAA 1453585 36 100.0 42 NNNNNNNNNN .................................... CTCTCAAAGAGGTTATTTATAACCCCCAAAGTGGAGATTTAA 1453663 36 100.0 40 NNNNNNNNNN .................................... TCTTATCTATGTAAATTTTCCAGTTTAGGTCTGGAATAAC 1453739 36 100.0 42 NNNNNNNNNN .................................... ATTATTTCCATGTAGCTTAGCTCCAGCTAAGAGTGTTCTGGA 1453817 36 100.0 38 NNNNNNNNNN .................................... AATAAAGCCCCGCCCCTCGGCGGGCTTTTTTCTTTCCT 1453891 36 100.0 36 NNNNNNNNNN .................................... TTAAAGGATCCGCGCGGTCTCTAGCAGCTAAAATTA 1453963 36 100.0 38 NNNNNNNNNN .................................... GTCATTAAACTCCGCTTTTAATTGTTCAATCTCTTTAA 1454037 36 100.0 40 NNNNNNNNNN .................................... GCTTCTATATCCTCTTTTGACATGGAAGGGATGTTTGCTA 1454113 36 100.0 34 NNNNNNNNNN .................................... GTTAAGTTTACGGATAGCCATGTTGATTCCTCAC 1454183 36 100.0 40 NNNNNNNNNN .................................... TTTTGTCGGCTGAGATTAGCATCTCAGCCTCTAACCCTAC 1454259 36 100.0 37 NNNNNNNNNN .................................... GCGGGGACGGATGCTCCAAACCGAGGATAGAAAATTG 1454332 36 100.0 37 NNNNNNNNNN .................................... TGCTTTTTCGCGTACTTCTTGAGAAAGTCAGACTGTT 1454405 36 100.0 41 NNNNNNNNNN .................................... TTAAACCATTTTTCCTTGGCTTCTAGCTTTTCTAACGCTTG 1454482 36 100.0 42 NNNNNNNNNN .................................... AGTGGAGACTTCTAAATAAACAAAGTCTACTAACTTAGCAGT 1454560 36 100.0 35 NNNNNNNNNN .................................... ACCTCTATGAGGTCGAAGAACTTTTTGTTTTCTCC 1454631 36 100.0 46 NNNNNNNNNN .................................... TATTAATCAGAAGGTGTACTGCACTACCGAAGAAGGAGCTTTAGAG 1454713 36 100.0 40 NNNNNNNNNN .................................... TTCCTCTGAAGCTGCTTGTATTTTCTGCCAACTCTTATGA 1454789 36 100.0 38 NNNNNNNNNN .................................... GAAGTCAACAGTGAAATAACTTCCTCGGTCAATAACTT 1454863 36 100.0 40 NNNNNNNNNN .................................... GCTTCTGACGGAGCAGCGTTCGCTGTTTTCTTCTTGCGAT 1454939 36 100.0 36 NNNNNNNNNN .................................... GTTCGAAGATTGCTTCTAAAGAAGCCAAATCTACCC 1455011 36 100.0 35 NNNNNNNNNN .................................... CCACCGTATTCCAAAGCAAGCGTTCGAGTTCTTAG 1455082 36 100.0 38 NNNNNNNNNN .................................... TGGTTAGTAGTGTTTTTCTCCACTCTAAATGTTTCGAA 1455156 36 100.0 40 NNNNNNNNNN .................................... AACGATTGAAACAGTTAAGACCTCTTTAGGCTTAATGCGA 1455232 36 100.0 36 NNNNNNNNNN .................................... GCGGGACTTTATGTGAAAAGATTAATCTTCGTCTAT 1455304 36 100.0 38 NNNNNNNNNN .................................... TCTAAAACTTTCTTTGCTAAACTCTCTAACCTTTCTAA 1455378 36 100.0 36 NNNNNNNNNN .................................... TTGTTGTTCATGGTTTTACTCATCGTAGTTATAGAA 1455450 36 100.0 41 NNNNNNNNNN .................................... GCTTCGATGTCCTCTTTGGACATCCCAGGGATACTCGCGAG 1455527 36 100.0 36 NNNNNNNNNN .................................... TTGGAACAACAGGTCTAAGTGAATCATTGTTAGTTT 1455599 36 100.0 40 NNNNNNNNNN .................................... TTAATGTTCTCACCGATTTGTTCAATTTGATTTTGCATTT 1455675 36 100.0 36 NNNNNNNNNN .................................... TTTTGCTTAGTGTAGGTTAAAAGGCCGCTGTTAAAG 1455747 36 100.0 38 NNNNNNNNNN .................................... AACTTTAGGGATAGAAATATAACCATCAGATAATAGGA 1455821 36 100.0 35 NNNNNNNNNN .................................... TGCAAGGGGTGACCTTCCTTGCAAACAGCGAGGTA 1455892 36 100.0 37 NNNNNNNNNN .................................... ACCTTACTAAGTAGAAGTCAGCATTTAATCGTTCCTG 1455965 36 100.0 39 NNNNNNNNNN .................................... CAGTCTTTAGAAAAGCGTTCAGGGAAGATTTGTTCTAAG 1456040 36 100.0 37 NNNNNNNNNN .................................... ATAGAACGAGCCCGCCGGCTTCGATTAAAACAAATTC 1456113 36 100.0 38 NNNNNNNNNN .................................... AGCATAGCAGTCTAACCGATAATAAACTCCGTCACCAG 1456187 36 100.0 37 NNNNNNNNNN .................................... TCTAAGTGCTCCCATTGTTACTCTCCCCCAAGCTCGA 1456260 36 100.0 35 NNNNNNNNNN .................................... CATCTCGCCGCGCCCGCTCTTTATAGGCTGCTCTT 1456331 36 100.0 37 NNNNNNNNNN .................................... ATCGAGTCGTACAGCAGGATGCCACCCTGGAAGGAAG 1456404 36 100.0 36 NNNNNNNNNN .................................... ACGGGATAGGATACTGTGTATCCTGGGTCTATTTTA 1456476 36 100.0 44 NNNNNNNNNN .................................... TAGCCTCCAAAGAGGATTTTAGGCTTTCCAGTTCAGCAGGCGCG 1456556 36 100.0 35 NNNNNNNNNN .................................... ATAATCTATATCTTCTTATAAATTCTTATTACTAT 1456627 36 100.0 39 NNNNNNNNNN .................................... TTTTTCTTTTCTCCTACATACTTGTGCTTAGACAGTGAA 1456702 36 100.0 39 NNNNNNNNNN .................................... TCCCCATTGTCCCCTAGACTCCTTCTCTTAGAGTCATTA 1456777 36 100.0 39 NNNNNNNNNN .................................... ATAAGGAGTTTTGATGATTCTTCCATCGTTTAGGTACAA 1456852 36 100.0 39 NNNNNNNNNN .................................... CTTTCATGAAATTAAAGAGACCTTCAAAGAGAACAATGT 1456927 36 100.0 35 NNNNNNNNNN .................................... GGGACGCACAGCGCAAGGTGCTATCTCCCGTTCTT 1456998 36 100.0 38 NNNNNNNNNN .................................... TCCATACACCCCGGCGCGGCGTAATTGATTAATTTCTT 1457072 36 100.0 40 NNNNNNNNNN .................................... ACTATTAAAACTGCTCTAGAAGCAGAGAAGCCTTATTTAA 1457148 36 100.0 40 NNNNNNNNNN .................................... TTCCAATCATCTAGGGACTTTTTAGAAGGTTTAGCCCAAT 1457224 36 100.0 37 NNNNNNNNNN .................................... AGGTAATTCCTAGGTTGATAATAAAGTCTTTTACCTT 1457297 36 100.0 35 NNNNNNNNNN .................................... TCCGTCAGGGTCTGTTCCTTTTAACAATACGGCAG 1457368 36 100.0 40 NNNNNNNNNN .................................... AACTCTCTTATAGAGTTCTCAGTCACGTTAGGGAGATACC 1457444 36 100.0 37 NNNNNNNNNN .................................... GTTTCTATTAATTTCTAACCACTGTTTCATTTTTTCT 1457517 36 100.0 39 NNNNNNNNNN .................................... ATAACTATCAACCCAAGGTTGCATAGTGACTCCATTTAA 1457592 36 100.0 37 NNNNNNNNNN .................................... TCGAAGACCATTACGTCTTCTTGGTCTCCCACTTCTA 1457665 36 100.0 38 NNNNNNNNNN .................................... CGATAACGTATATTTCACTGACTTCAATTTCTTAGAGC 1457739 36 100.0 34 NNNNNNNNNN .................................... AGAAAAAAGCCCGCCAAGGGGCGGGCCTTTTTTA 1457809 36 100.0 38 NNNNNNNNNN .................................... GGGAGACCGTTGAAATAGTTGTAGAGCGTAATGTGCAG 1457883 36 100.0 43 NNNNNNNNNN .................................... TTCTCATAACTTCCTAGAGCCTTAGCTTTATTTTTATAGTAAA 1457962 36 100.0 38 NNNNNNNNNN .................................... CCCTTCGCGAAACCGTAAAATATTACTACGTATCCCGT 1458036 36 100.0 38 NNNNNNNNNN .................................... CATAATAAACTCCTTACTGTATTGTGTATGTGTTGATG 1458110 36 100.0 42 NNNNNNNNNN .................................... ACCAGATGACTTTCTATAAAGGAGAGAAACTGGTCATCACTG 1458188 36 100.0 36 NNNNNNNNNN .................................... AAAAAGTAGTCTTAGACTACGCTGCGAAAGTAGACG 1458260 36 100.0 36 NNNNNNNNNN .................................... TAGCCTCCAAAGAGGATTTTAGTTCTTGTAGTTCTA 1458332 36 100.0 38 NNNNNNNNNN .................................... TTACACTCCCGCTTCCACCTCCAAGGGAGGACAGCGGG 1458406 36 100.0 35 NNNNNNNNNN .................................... GATGTTTCTTACCTCTCTTTCCCGTCCTCTGTAAA 1458477 36 100.0 36 NNNNNNNNNN .................................... TTCTATGAGCAGGAAGGAGAAGCAACTTCCACTGAT 1458549 36 100.0 38 NNNNNNNNNN .................................... GACCTGGATGAGGTCGAAGAAGTTTTTATTATCTTCTA 1458623 36 100.0 43 NNNNNNNNNN .................................... TAGCTACGCTTACGCCGACGACGCTTCTTGCGGTCAGCTTTAC 1458702 36 100.0 37 NNNNNNNNNN .................................... TCGACCGAGACAGCGACGATCACCAAGTCTTAGTCGA 1458775 36 100.0 39 NNNNNNNNNN .................................... ATTTGGATGGGACGGACGCCCGCCTTGCGGCGGACTCGT 1458850 36 100.0 37 NNNNNNNNNN .................................... CCATTAGGACTTCGTAGCCAGAGAAGGACGTCATGAT 1458923 36 100.0 37 NNNNNNNNNN .................................... AGGACTCGGTCGCTCTGCTGAGGAGACATACCATCGA 1458996 36 100.0 40 NNNNNNNNNN .................................... TTCTCTAAAGCAACCCAGTTCTCTGCATTCGTCCAGAGCT 1459072 36 100.0 38 NNNNNNNNNN .................................... AATAAAAAGAAACGGGGAACTCGTAAGACTCTAAACGA 1459146 36 100.0 35 NNNNNNNNNN .................................... CTGACACTAGACATCTCCCTCCGTGCAGCGATGGA 1459217 36 100.0 38 NNNNNNNNNN .................................... GAATATGCAGCTTCAGAGCATTCCGTTTATTGCGGAGG 1459291 36 100.0 39 NNNNNNNNNN .................................... TTATTAATCTAGTCGAACTGTCCGACCAATCAGACCCAA 1459366 36 100.0 37 NNNNNNNNNN .................................... TGAAGAGGTAAAGCGATACTCCCGCTTGGAGCGTCAA 1459439 36 100.0 39 NNNNNNNNNN .................................... TTCCAGTCTGGAATGCTCAGAGCACCAGAAATAAGAATG 1459514 36 100.0 38 NNNNNNNNNN .................................... GACTTTTGACCATTTTGGCTATTGTAAATATAACCTAC 1459588 36 100.0 36 NNNNNNNNNN .................................... AAAAAATCATCAATCACATCTTTTTTAGTAAATTTA 1459660 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 237 36 38 GTCTCTTTTCCTAAGAGAAACTAATTGAATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.80,-1.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [55.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [237,216] Score: 0/0.18 # # Final direction: R [0,0.64 Confidence: HIGH] >NC_019778 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3030550 36 100.0 37 TCGCTCTACC .................................... TCTCGGTATCGCTGGTTAATTCGGTTGTCGTTATCAC 3030623 36 100.0 38 TCGTTATCAC .................................... GAGAGATGGTGGGCAATCAATCAAGATAAAATCGTAGT 3030697 36 100.0 34 AAATCGTAGT .................................... GAAGATGGGGTAGTGAGTTCATCACCAAACAGTG 3030767 36 100.0 39 CCAAACAGTG .................................... AATCTTACGAACGGCGGTGTCAGGGCTTAAATGATAGAA 3030842 36 100.0 37 AATGATAGAA .................................... GCTAATTCCTTCTCTTTACGTCTTCTAATTTCCAAAG 3030915 36 100.0 40 ATTTCCAAAG .................................... GTCCATTAAACCCATCCCAGTTCTCTTGGGGGGGGATAAT 3030991 36 100.0 GGGGGATAAT .................................... AGCGACTTCT ========== ====== ====== ====== ========== ==================================== 7 36 37 GTGATCAACGCCTAATGGCGATCTGAGGTTTAACAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.10,-6.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [113,252] Score: 0.18/0.18 # # Final direction: F [0.37,0.18 Confidence: MEDIUM] >NC_019779 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2090436 37 100.0 34 GATGCAAGCT ..................................... TTTTGATTCAGGCCCCGAGCCAAATCCCGATCCC 2090507 37 100.0 36 TCCCGATCCC ..................................... TCTAACTAAAAATAATCATAACACATTCTTTTAAAA 2090580 37 100.0 34 TCTTTTAAAA ..................................... AAGCAATTTTATATTGCTCAGGAGTGCTAGGCAA 2090651 37 100.0 35 TGCTAGGCAA ..................................... AGGGAAATATACCAGATGGTAGCAGTAAGGTAGCA 2090723 37 100.0 34 TAAGGTAGCA ..................................... CTAAGATGACCGCAGTGGCGCAATAACAACTTCT 2090794 37 100.0 34 AACAACTTCT ..................................... CTTTTCAGTCTTGCGATCCTCGTAGTCATCAAAT 2090865 37 100.0 34 GTCATCAAAT ..................................... ATTAAAAGAGGGGTTAAAAGTTGTTGGATTCAAT 2090936 37 100.0 34 TGGATTCAAT ..................................... ACGGACTGAATATTACAAAACCATCGGGGCAAAG 2091007 37 100.0 33 CGGGGCAAAG ..................................... TTTTTCTGTGGTCAGAATAGCCTAAGTATTCTG 2091077 37 100.0 40 AAGTATTCTG ..................................... GAAAGAAGAGCGCAACGACAACAGCAGTGACACCGCAACG 2091154 37 100.0 36 CACCGCAACG ..................................... TATTTTGTGGTTTCAGGATGAATCCTACCTAAAATC 2091227 37 100.0 37 ACCTAAAATC ..................................... TTGCTCAAGTTTTGGCATCATTGTGTAGTCAAATACT 2091301 37 100.0 43 GTCAAATACT ..................................... AGGGAATTTTGTAATATCTTCTATGCCAAGATTTTCGTTGATA 2091381 37 100.0 36 TTCGTTGATA ..................................... TAACATCTGCAATGGTTTCTTCTAGGAGTTCCCACT 2091454 37 100.0 38 AGTTCCCACT ..................................... CCATCGCTTTGACTTTCATTCTACTAATGAAAAGGGAG 2091529 37 100.0 37 GAAAAGGGAG ..................................... CTGGTCGCAGTAATGAATATCCTCATTGGCTCTTAGA 2091603 37 100.0 34 GGCTCTTAGA ..................................... TTATTAATAGGTAAATAAGGTGGATCGAGATATA 2091674 37 100.0 37 TCGAGATATA ..................................... AAAAATAAGCCAGAACAACCGCTCCATGACACAGTTC 2091748 37 100.0 35 GACACAGTTC ..................................... TTTTCATAAACGAAAACCAAAGTACAAGAAATGCT 2091820 37 100.0 40 AAGAAATGCT ..................................... GAGAAAAGCTGCGGATGGATTTTAGGCGGAGCTTGCCCAA 2091897 37 100.0 38 GCTTGCCCAA ..................................... CCGATATAAGATTTACTGGCTTTAGTTGCTCCTGTTCT 2091972 37 100.0 40 CTCCTGTTCT ..................................... ATCGACTCTCTGACTAGCGTTAATCTTCGCAGCACCTTCA 2092049 37 100.0 35 AGCACCTTCA ..................................... TCCTTCCTAAAATGAGATATCTGTTAATCCTTTGT 2092121 37 100.0 34 AATCCTTTGT ..................................... TGAGTATTCGGGCAACGCTCGAATATCATCCAGT 2092192 37 100.0 34 ATCATCCAGT ..................................... TTTGAATAAAGTGTAAACTCTGTAAACTTAGGCG 2092263 37 100.0 35 AACTTAGGCG ..................................... TTTTTGGTTGTGACAATTCTGAAGGGGGGTCAAGT 2092335 37 100.0 35 GGGGTCAAGT ..................................... GTTGTTTAGCGATATCTTCGCCTGATTGCTCCCAA 2092407 37 100.0 37 TTGCTCCCAA ..................................... GTCAACGCTTTACCAACTCGTTTGGCAGTTGACCAAA 2092481 37 100.0 32 GTTGACCAAA ..................................... CCGCTAGTTGTCCCCTCGGCTATGGTTGCGGT 2092550 37 100.0 33 TGGTTGCGGT ..................................... GGTAAGTGTAATTGGGTCTTTATCATCATCTTC 2092620 37 100.0 37 CATCATCTTC ..................................... CTTATCATGAAGAAGAACATCTACACTAATTTAATGT 2092694 37 100.0 39 AATTTAATGT ..................................... TGGCATTTTCAATTTTCTGCTCTAGTGAATCCAGATCTG 2092770 37 100.0 36 TCCAGATCTG ..................................... CATTTCCAGCATTGGCTCTCCCCCGATGGTAATTGC 2092843 37 100.0 34 TGGTAATTGC ..................................... GCTGGGCTGACATTCCCCCGGAAAACAACCCAGA 2092914 37 100.0 41 ACAACCCAGA ..................................... TATTAATTGCTTACGGTAGTCCTGATTACGGACTAAGCACA 2092992 37 100.0 42 ACTAAGCACA ..................................... TTCTACAATTAGATAATTAGCAAGTTGCTACCAGTGACTACC 2093071 37 100.0 37 AGTGACTACC ..................................... TTACAGCAACTCGTAGAGGCGTACTGTGAAGGAGATA 2093145 37 100.0 36 GAAGGAGATA ..................................... TTCCCCACCCTGAATATAAGCAGAATAAAAATACGG 2093218 37 100.0 36 AAAAATACGG ..................................... ATTAATCCCAGATACAGACGGCATTTTAACCTCCCA 2093291 37 100.0 34 TAACCTCCCA ..................................... AAAACTACTCGCTGAGGAGTACCGTCGCTTAACA 2093362 37 100.0 36 TCGCTTAACA ..................................... AGAGTATGGGGACCAGAAATAGCAAATACTTCAATG 2093435 37 100.0 37 TACTTCAATG ..................................... GTTAGGGTCGAAGGGATGCTCCCTAAACTCAAAAGCA 2093509 37 97.3 34 CTCAAAAGCA ....................................T AACGCTACTCAGCAACAAGTCCTTACTCTTATGA 2093580 37 97.3 35 ACTCTTATGA ....................................T TATTACCCCAGTTATTGCGCTCTAAAGGAACAGGT 2093652 37 97.3 35 AGGAACAGGT ....................................T CCTTTTTTTTGCCTCAGCTTCTAGTCGATCTTCCA 2093724 37 97.3 37 CGATCTTCCA ....................................T CAAAAGTTAAATTATTGTTGTTGTGCGGGCTTTAAAC 2093798 37 100.0 33 GGCTTTAAAC ..................................... ACAGTGTTTACAGGTGGGCTTGTTGATGCCGAT 2093868 37 100.0 35 TGATGCCGAT ..................................... ATAATTGTGATTACTATCCTTTTTATATGGCTATT 2093940 37 94.6 TATGGCTATT ............................CG....... TCAATTTAGT ========== ====== ====== ====== ========== ===================================== 49 37 36 GTTTAAATCCCCGATTTTCAGGGGACTAAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.16%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-9.40,-10.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [58.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [234,267] Score: 0/0.18 # # Final direction: F [4.91,0.64 Confidence: HIGH] >NC_019779 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 751854 37 100.0 35 CAAGCACGGT ..................................... CATTTAGCATCATAAGCCTGCTTGGTCAGATGATA 751926 37 100.0 36 TCAGATGATA ..................................... GAAGGAAATCCTGACCACACCGATCGCGATATCTCT 751999 37 100.0 33 CGATATCTCT ..................................... AAGTGAAGAATTTAACTCACTTAAGGAGTCAAT 752069 37 100.0 33 AGGAGTCAAT ..................................... TTCTACCAGTTGTGGCTCTTTTTCTTTATAAGC 752139 37 100.0 39 CTTTATAAGC ..................................... TTCTTATCAAAAATAGAAATACTCTCGCAGTGTATCCAA 752215 37 100.0 38 GTGTATCCAA ..................................... TAAACGGATACACATACACAGTGGACATCGAGTTCATC 752290 37 100.0 36 CGAGTTCATC ..................................... TGGTGAGGGTTTATGATCATCCTTATGCCAAGAAAA 752363 37 100.0 37 GCCAAGAAAA ..................................... ACTGTTATGGGTGAATCTCGCCGAAAACCAAGACGGA 752437 37 100.0 34 CCAAGACGGA ..................................... CAATCGTCAAAACAGTGATGGCAGTAATTCGGAA 752508 37 100.0 47 TAATTCGGAA ..................................... TGGCTATTAATCTCTCTGTAGAACAACGTCAAACGATTCAAGTATTA 752592 37 100.0 37 TCAAGTATTA ..................................... GATTTTATCCTTTTTTTTGCTATAGTTCCGCTTTTTC 752666 37 100.0 36 CCGCTTTTTC ..................................... CTAGCGGTAGCTGCTACCACCTCATCTGCTACCAGT 752739 37 100.0 34 TGCTACCAGT ..................................... CTTTTCCGTGCGGTTACTCAGGTTGTCAGCAAAG 752810 37 100.0 45 GTCAGCAAAG ..................................... TCGGCGGTATGGAGGGTGTAAGAATTTGAGATGCAGCCAGCAAAG 752892 37 100.0 40 GCCAGCAAAG ..................................... TCGAGAGTACCGAGAAGGAATATTTCAGTAAGAGAGAGAG 752969 37 100.0 35 AGAGAGAGAG ..................................... CTGAGAAGCAATAATCCTGCCACCATATCAGACAA 753041 37 100.0 36 TATCAGACAA ..................................... ATTAATCCGATGGAGTAACTGCCATCTGGATATTCG 753114 37 100.0 37 TGGATATTCG ..................................... AATACCTACCAGTTACTACCAACTGGTATCATATTAG 753188 37 100.0 33 ATCATATTAG ..................................... TGGACACAACTACCAAAACTCCCCCAAGTCAAC 753258 37 100.0 CCAAGTCAAC ..................................... ATCAGGCTTA ========== ====== ====== ====== ========== ===================================== 20 37 36 GTTTCAATCCCTAGGAAGGGATTAGGTTTATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.16%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.10,-8.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [352,107] Score: 0.18/0.18 # # Final direction: F [0.45,0.37 Confidence: LOW] >NC_019779 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 753400 37 100.0 42 TCCGATTCAA ..................................... CCCCAACTGGAAACTAACGGAGGCACATTTGATCCGATTCAA 753479 37 100.0 35 TCCGATTCAA ..................................... ATGGCAATGAGGTAGCAGGTGGTAGCTATGAGGAT 753551 37 100.0 37 CTATGAGGAT ..................................... CCCTTCCGTCCCCCCAAAGGGGGGAAACGGATTTTCC 753625 37 100.0 34 CGGATTTTCC ..................................... TTCCCTCACAGTATGCTTCTACCAGTTGCTGAAG 753696 37 100.0 35 GTTGCTGAAG ..................................... TCCAGAAAATTTGATATGAGACGAATAGCTCTTAC 753768 37 100.0 36 TAGCTCTTAC ..................................... TAGCCAAATCTCCCTCGGGGATTCAAATCCATTGGA 753841 37 100.0 37 ATCCATTGGA ..................................... CATCAATAAGATTAGTTATAAAGTTATTGAATCCAAC 753915 37 100.0 34 TGAATCCAAC ..................................... TGATGTTTTCTATGATAAAGATTACGTCATTAAT 753986 37 100.0 34 CGTCATTAAT ..................................... ATCTGTGTCTTTGTTCTTTACGCATTGTTAATTC 754057 37 100.0 35 TTGTTAATTC ..................................... ATGGCAAGTAAAAGTTATTGGGAAAGGAAGTAAAG 754129 37 100.0 38 GGAAGTAAAG ..................................... CTTTGATATCCTCGGGGATATCTTCTTCTTTAGATGGG 754204 37 100.0 40 TTTAGATGGG ..................................... TGATATGGCTAGAATCCTTTCCACATCTAGCTAAAATTTT 754281 37 100.0 33 CTAAAATTTT ..................................... GTAATTTTTCGGCTAGCTGCACAGCTTCTGATT 754351 37 100.0 38 GCTTCTGATT ..................................... ACAGCAAAAGAAGCACCGCCCAAAGTAGTAGCCCCAGC 754426 37 100.0 34 TAGCCCCAGC ..................................... AATTAAAACAAACTAAGCAAGGGCGTTTAATTCA 754497 37 100.0 33 GTTTAATTCA ..................................... CGTAAAAGGGCAAGCTAAGCCTGATAAAAATGA 754567 37 100.0 33 ATAAAAATGA ..................................... AAATCTTATTAAAAAAGGCATCTGCATACTCAT 754637 37 100.0 34 GCATACTCAT ..................................... TAACGGAAACACAGTCCTTTTGTGGCGTGCTTTC 754708 37 100.0 GCGTGCTTTC ..................................... CGCAGGCCTT ========== ====== ====== ====== ========== ===================================== 19 37 35 GTTTCAATCCCTAGGAAGGGATTAGGTTTATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.16%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.10,-8.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [105,539] Score: 0.18/0.18 # # Final direction: R [0.27,0.55 Confidence: MEDIUM] >NC_019779 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 769221 37 100.0 33 AAGGCCTGCG ..................................... TAACATCTTGAATCTTAAGAGATGGTTTCTTAC 769291 37 100.0 36 GGTTTCTTAC ..................................... TCAACCCACGAAGATAGCGAAATTGAGAAATTAAAT 769364 37 100.0 36 GAAATTAAAT ..................................... TCAATTGGTCGAGATGATTCTCTAAATACTCCCCTA 769437 37 100.0 33 TACTCCCCTA ..................................... TTGCCTTTTATCTTATCAGAAATCCCGATATTT 769507 37 100.0 37 CCCGATATTT ..................................... ATCCCATGATTAAGAAAGCAGTTAGAGATGGGAATTT 769581 37 100.0 35 ATGGGAATTT ..................................... AAATAGAGAAAAACAATACAGAGGAGAATAATAAT 769653 37 100.0 35 GAATAATAAT ..................................... TAGAATCTTGCCATAAAGTGAAAGCGACAATAGGA 769725 37 100.0 38 GACAATAGGA ..................................... TCGCGCTGCAAAGTGTGAATGTGGTGGTGGAATGAATG 769800 37 100.0 36 GGAATGAATG ..................................... TTCAGATAGCCAGTTTTCGCAGCCTACCGCATCCAT 769873 37 100.0 36 CCGCATCCAT ..................................... TCTACCAGTGTGCTACCATTTTCTACCTGATTTAAT 769946 37 100.0 37 CTGATTTAAT ..................................... ACATGATCCTTAAAAACATAGGCTGATAATCTCCAAT 770020 37 100.0 34 AATCTCCAAT ..................................... CCTACATATTTAAGGAAAATTAATGGATAAACAG 770091 37 100.0 40 GGATAAACAG ..................................... GGATTTCTTGTAAGAGATTGTTTACCTCTGGGTCTTGAGA 770168 37 100.0 36 GGTCTTGAGA ..................................... GTAGCAGTAAAAAAGACAGAAATTAAGCAACTGGTA 770241 37 100.0 35 GCAACTGGTA ..................................... TTTAATGCTCTAGTAGATTCTGAACGGTTAATGGG 770313 37 100.0 34 GGTTAATGGG ..................................... ATTTTCTATCAATTGAAAGTCACCCTCATCGCTA 770384 37 100.0 35 CTCATCGCTA ..................................... GCGATGTTGACCTTCTAGTCAATGATAGCACGACT 770456 37 100.0 35 TAGCACGACT ..................................... ATCTTCAAATCATTAAGAAATCAGCTTCCAATTAT 770528 37 100.0 39 TTCCAATTAT ..................................... GAATTAGGAAGCTCTATTCTACCATGGCTCTACAATTTT 770604 37 100.0 35 CTACAATTTT ..................................... TCAATTGGTCGAGATGATTCTCTAAATACTCCCCT 770676 37 100.0 34 ATACTCCCCT ..................................... CTCTTTGGCTTGACTGGTGGATGAACAACCGCGA 770747 37 100.0 35 ACAACCGCGA ..................................... AAAAGAATTAATATTTATCCCTCCAGGAGAGTTTT 770819 37 100.0 41 GGAGAGTTTT ..................................... AAACTGGAGACTATGCAGCGCGTAACTTCGCAGCTTATCGT 770897 37 100.0 34 AGCTTATCGT ..................................... AGCATAAAGCCCCAGCGCCAATCTTGCCTGCTTC 770968 37 100.0 34 TGCCTGCTTC ..................................... GTTGATGATTTGAATCTAGAAAAGTATGGGCAGT 771039 37 100.0 36 TATGGGCAGT ..................................... TATTATTCGGGTTTTCTGACATAATTTCCCTCAAAA 771112 37 100.0 41 TCCCTCAAAA ..................................... TCTTCACAATGTTTATCCCTCTCTGGGTCTTCCCCAACGAC 771190 37 100.0 33 CCCCAACGAC ..................................... ATATTTATAAATGTGATTAAGAAATCACACAAA 771260 37 100.0 35 ATCACACAAA ..................................... TTATCTTTACTGGGTTTTATTGTCTTGAGAACCGT 771332 37 100.0 36 TGAGAACCGT ..................................... ATAAACATTCCTTAGCTGAAAAATACAAGATAACCA 771405 37 100.0 34 AAGATAACCA ..................................... TCAGACTATCACTGATGGCGGTATGTTCAATCCG 771476 37 100.0 37 GTTCAATCCG ..................................... TTCCTGAGTACAAAGCAGGAAGAAAGGAGAAGCCCGA 771550 37 100.0 38 AGAAGCCCGA ..................................... TTTCATCGAGGAGTAAATGAGTTTCCCTAGATAACGAA 771625 37 100.0 35 AGATAACGAA ..................................... AACGGTATTTTTGGTTTGAAGCGTTCTTTGAGCGA 771697 37 100.0 40 CTTTGAGCGA ..................................... CTCCTGCATTCTTCGGTAATCTTCAACCACATCGGCAACA 771774 37 100.0 35 ATCGGCAACA ..................................... GGGATTAAGAATGCACGAAGCATTAAATCTAACGT 771846 37 100.0 33 AATCTAACGT ..................................... TTGCATCTTTGATTGAATTAAACATTTTTCAAT 771916 37 100.0 37 ATTTTTCAAT ..................................... ATAGGATTGATTTTCGATTAACTCATCAACAGAATGC 771990 37 100.0 36 AACAGAATGC ..................................... ATGACTATGAGGGAATTTTAGCCATGAGTAAAGAAT 772063 37 100.0 33 AGTAAAGAAT ..................................... TAATTTAATTAAAGAACAAATTATTTCAGGATT 772133 37 100.0 TTTCAGGATT ..................................... TTATCATATT ========== ====== ====== ====== ========== ===================================== 41 37 35 GTTTCAATAAACCTAATCCCTTCCTAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.16%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.50,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [232,5826] Score: 0.18/0.18 # # Final direction: R [0.37,0.45 Confidence: LOW] >NC_019779 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 772281 37 100.0 35 TGAATTTCGG ..................................... AAAGCAAAACTTGGGAACGATTATTCTAAAGTATT 772353 37 100.0 39 CTAAAGTATT ..................................... GTTCTATAAGAATTTTCCCCTGTTTCGTAATAAGACAGT 772429 37 100.0 35 ATAAGACAGT ..................................... GCGCATACATCAAGAAACTGGTCTCGATTGATTTT 772501 37 100.0 39 GATTGATTTT ..................................... CCAGTCGTCGCAATAATTTCAGCCCCAGAAAAAACATCA 772577 37 100.0 34 AAAAACATCA ..................................... TGCATATAAAGTCAGTTTTCTGTTATTGCCATTC 772648 37 100.0 39 ATTGCCATTC ..................................... TCCCTTCATCCCATTCAAACTCAAGCATCAGCCTCTACA 772724 37 100.0 35 AGCCTCTACA ..................................... ATTAGTGCTGCCATTAGTGGTTGTGGGCAAATTCA 772796 37 100.0 35 GGCAAATTCA ..................................... TCCTTTTGGTATAAAGGAGAGTATAATGAATTCAT 772868 37 100.0 35 ATGAATTCAT ..................................... AATGATATGGTCACTAGTATTGGCACTATTACCAC 772940 37 100.0 44 CTATTACCAC ..................................... AAATCACAATATACTACTGGCACAATAGTTAATTCTTCTAAAGA 773021 37 100.0 35 CTTCTAAAGA ..................................... AAATCACAATGAATCAGGCAATTGTAAAAGCTAAT 773093 37 100.0 34 AAAAGCTAAT ..................................... TGGAAAATAATCAATTCCACCAATGATAAACGAA 773164 37 100.0 36 GATAAACGAA ..................................... TAATTCAATCAAAGACGCTAAACTTGCGATTCAAAA 773237 37 100.0 36 CGATTCAAAA ..................................... TAGCAATTATTTTGTGAGAGAAAAATTGCCACAATA 773310 37 100.0 35 TGCCACAATA ..................................... TCTACATGAGCCACATTCTCTGTTTTTCCTTTATG 773382 37 100.0 35 TTCCTTTATG ..................................... TTTGTAAACTTCATTAACTTGTCGATCAGTGTATC 773454 37 100.0 30 TCAGTGTATC ..................................... ATACTTATAAAACGCATCGTTTATAACACA 773521 37 100.0 34 TTATAACACA ..................................... TTCCCATATTTCCCGCAAAAAGACACAAATGTTT 773592 37 100.0 37 ACAAATGTTT ..................................... GATGTGAATCATTTTTATTCCTTAAATCATATTTGAA 773666 37 100.0 33 CATATTTGAA ..................................... TGGGTATATTTCAGCACCAGCACCTGATGAAAA 773736 37 100.0 35 CTGATGAAAA ..................................... TCTTTTGTGTATATCAATATTTTTTGATATGGCTG 773808 37 100.0 36 GATATGGCTG ..................................... AAAATTCGGTGTGCTCCTAGTAAAATCTCAACTGCA 773881 37 100.0 35 CTCAACTGCA ..................................... TTGATAATCCCAATTAACAGGGGGATTATAGGAGG 773953 37 100.0 36 TTATAGGAGG ..................................... ACTAATTATGACACAAAATAATCAACAGAATAAAAG 774026 37 100.0 35 AGAATAAAAG ..................................... CGCGATGCTGGAACGCCAGACTATACCAATTTTTG 774098 37 100.0 35 CCAATTTTTG ..................................... TAATAAATCATTTAACATTTCTACAGAAACCGCAG 774170 37 100.0 33 GAAACCGCAG ..................................... TAAGATTCTTGTTTTTTTAAATATTCGTCAATC 774240 37 100.0 35 TTCGTCAATC ..................................... TCTTTAGAATCTGAAATTCATGCTACAGATAAAGT 774312 37 100.0 39 CAGATAAAGT ..................................... CTCTGTGTCTGTTGTAATAATGCCATATACTTTTTCCCA 774388 37 100.0 35 CTTTTTCCCA ..................................... TGAAATGAATGATTGGTTAGGATTATTGCCTTGGG 774460 37 100.0 36 TTGCCTTGGG ..................................... CTTCAACGGGCTTCCCGTGAGCCACAATCGCAAAAA 774533 37 100.0 38 ATCGCAAAAA ..................................... TGCGTGGTCGTAAATCCCATTGAAAAGAGCATTTCTCG 774608 37 100.0 34 GCATTTCTCG ..................................... TTAATTTTCCAAACGCCCCGACAATACAATTGTC 774679 37 100.0 35 TACAATTGTC ..................................... CTTAAAATACTCAAAATTCATACAACGAGGGAAGT 774751 37 100.0 34 CGAGGGAAGT ..................................... ACAACAGAACAAAATAATGACGGTAGCACCAAAA 774822 37 100.0 35 AGCACCAAAA ..................................... TTAATTATTGATTATTTTTTTCATAAAAATCAATA 774894 37 100.0 34 AAAATCAATA ..................................... GATTTTTTGTTGGTTCTAAATAAGATAATCTTAA 774965 37 100.0 33 ATAATCTTAA ..................................... CTAATTTTACTTTTGTTTTACCTTCGCTAAGCA 775035 37 100.0 34 TCGCTAAGCA ..................................... TTAACATCTTCTAAAAGACCATCATGATAATTTT 775106 37 100.0 36 TGATAATTTT ..................................... CAAATAATTGTACTAATTGATCTCGATTTGGCTTAT 775179 37 100.0 30 TTTGGCTTAT ..................................... AATTGGATATCATGGAGCTTGCCGTTTCAT 775246 37 100.0 36 GCCGTTTCAT ..................................... TACAGGCATTACGCGGAATTCCTCTTTGTTTTCCGC 775319 37 100.0 38 TGTTTTCCGC ..................................... AGGCTCATGAGACGCTTTATGTGTACGAGTGGAACAAT 775394 37 100.0 39 GTGGAACAAT ..................................... CCTGTTGTTAAATCAGATGACTCATCCGAACAAGGTATT 775470 37 100.0 41 ACAAGGTATT ..................................... TTCAATTGAAATTGTTTTTTTAATTTCAACGGAGATTGCAG 775548 37 100.0 35 GAGATTGCAG ..................................... ATTAAGGTGCCCTTCTTTTAATTCGGAGTATAGTA 775620 37 100.0 40 GAGTATAGTA ..................................... TAGGATGAAACCGCAATCTTCGGGTAAGTTGAGATCTTTG 775697 37 100.0 35 GAGATCTTTG ..................................... GTTTTAGATTGCGGTTCGGTGAAGAAAGGTGGTTC 775769 37 100.0 35 AAGGTGGTTC ..................................... CAAAGAAGTTGACAAACTTCTAGACCGCTGGGTTC 775841 37 100.0 38 CGCTGGGTTC ..................................... AGATAACTATGCTGTCTATCACGAATTGAACTCTAGTT 775916 37 100.0 35 AACTCTAGTT ..................................... CCCAAATCCTCAATTATTATTCCATCGTATTCTTG 775988 37 100.0 38 CGTATTCTTG ..................................... TAAGCAATGATGATGGAGATGGGAAATTTTTAAACAGA 776063 37 100.0 39 TTTAAACAGA ..................................... CCAAACCACATAAGGATGGGATGATTAATGTTGTCATAA 776139 37 100.0 37 GTTGTCATAA ..................................... TTTTTCAATGCTAAATGTCCTGAAGCTCGTCCTCCAA 776213 37 100.0 36 CGTCCTCCAA ..................................... TCATAACCGAGCGCAGAAAATAAATCTAACATGATA 776286 37 100.0 41 TAACATGATA ..................................... GGGAGATATTTTAGGTTTGATTACATCATATTTAATGAAAA 776364 37 100.0 34 TTAATGAAAA ..................................... ATAAAATCAGTTGTGCAATGAGATGGGAAAGATG 776435 37 100.0 35 GGGAAAGATG ..................................... TTGGCTGCTTCCTCATAGGATAAGGAATACCCGAT 776507 37 100.0 37 AATACCCGAT ..................................... ACATTGAAAAGATAGCATAAGAAAGAATCTCCTTACT 776581 37 100.0 38 TCTCCTTACT ..................................... AATCTTAACGTAGTGCCCTTCTTCTGTGGTGACGTAAT 776656 37 100.0 34 GTGACGTAAT ..................................... TGATGATGTTTTTTTCTTGCTCTGTCATTGGTCT 776727 37 100.0 42 TCATTGGTCT ..................................... TGATTTGCGAATATATATCGAATATTCATCGCTATCAATCTC 776806 37 100.0 36 TATCAATCTC ..................................... TTTCTTGCATGGGATGTGTTTCCTTTTTGTTTGTTG 776879 37 100.0 37 TTGTTTGTTG ..................................... AGATTGAAAGTTACCAGCTACAAGGAATTATTCTGTT 776953 37 100.0 37 TTATTCTGTT ..................................... CTCAGAGGCTACAGTGAGGAATCCGAGTTGCATATCA 777027 37 100.0 38 TTGCATATCA ..................................... ATCACACTACGGCTTAGACATTTTGAAGGCTAAAGCGG 777102 37 100.0 GCTAAAGCGG ..................................... TTCTTGGCCT ========== ====== ====== ====== ========== ===================================== 67 37 36 GTTTCAATAAACCTAATCCCTTCCTAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.16%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.50,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [3292,857] Score: 0.18/0.18 # # Final direction: F [0.55,0 Confidence: HIGH] >NC_019792 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 3413161 30 100.0 34 NNNNNNNNNN .............................. TTGTCGTGTACGCGTGTGTTCGACGAGTTCGAGT 3413225 30 100.0 35 NNNNNNNNNN .............................. TTCGACAGGAGCGACGACGTCGATGAACAGGTATC 3413290 30 100.0 36 NNNNNNNNNN .............................. TCGGGTGGCGTCGGGATCGGGCCGCGAGGCATGCCG 3413356 30 100.0 35 NNNNNNNNNN .............................. ACCCTCGAAAGCGTCGAAGTTCGGCTCGAGGTCGT 3413421 30 100.0 32 NNNNNNNNNN .............................. GTGGGTCTCACTGCCAGATATGGAACACGCAA 3413483 30 100.0 36 NNNNNNNNNN .............................. GAGCGTTGGGAGATGGTGATATGGGTGATGGTGAGA 3413549 30 100.0 38 NNNNNNNNNN .............................. TCGTATTCAACCTCGAGCTCGTCCCCGGCCTCAACGTC 3413617 30 100.0 37 NNNNNNNNNN .............................. CAAGAGCCGGTCGAACACATCAAGTGGGTCAAACAGG 3413684 30 100.0 32 NNNNNNNNNN .............................. ACACCGTCTGGTGGAGGTCAGGCGCAGGACGA 3413746 30 100.0 35 NNNNNNNNNN .............................. CTTACATGACGACCGCCCGCAGTAGCGCGTCCCCT 3413811 30 100.0 33 NNNNNNNNNN .............................. GCCCGGCGGATGCTGGTCGCCGTCAAGGACGGC 3413874 30 100.0 36 NNNNNNNNNN .............................. GACCACCGTCCTCCCCGGTCTCCTCGCTCGAAGGGT 3413940 30 100.0 35 NNNNNNNNNN .............................. CACTGCCCGAGCTGTGGAAACGAGATCGAGGGCCC 3414005 30 100.0 37 NNNNNNNNNN .............................. CATGCCACGGTTTAAAATCAGATGGGCGTAGTAGGGC 3414072 30 100.0 34 NNNNNNNNNN .............................. GATGTATTCGATGCCAGTCCGCGTTGAGTAGCTC 3414136 30 100.0 38 NNNNNNNNNN .............................. GACCGTCCAGTCGTAGATCGGGTAGACGTTGTAAGCGT 3414204 30 100.0 36 NNNNNNNNNN .............................. CCAGTCACTGATTCGGACTGTTTGTCGGTCATACGC 3414270 30 100.0 36 NNNNNNNNNN .............................. CTCCTTAAGCCGCCGAGTCACAACCCGAACAGACTG 3414336 30 100.0 34 NNNNNNNNNN .............................. TCACACGCGGGACACTCTGGAATGCCGAGCCCCT 3414400 30 100.0 38 NNNNNNNNNN .............................. TTCATCTCGGACATACTCAGCCCTCGTCAGTTTTGAGA 3414468 30 100.0 34 NNNNNNNNNN .............................. CGAAAGCACCCCAAGCACCCCGGAAAGCACCCCA 3414532 30 100.0 36 NNNNNNNNNN .............................. CCGGTGCCCGACTGGGTTGACGAAAGCGACGTGCTT 3414598 30 100.0 35 NNNNNNNNNN .............................. ACCGACTCGTTGATCCACCAGTTCGCGAGGACGGT 3414663 30 100.0 35 NNNNNNNNNN .............................. GACGAAGAGTCGCGGACGTGGGACGAGGGCGCTCT 3414728 30 100.0 36 NNNNNNNNNN .............................. CCCGGTGGCGACGTCGTCAAGAGCGTGCACGAGCAA 3414794 30 100.0 36 NNNNNNNNNN .............................. TCGCGAAGGTCGTCCTCGTCGAGCGTGTCCAGCTGG 3414860 30 100.0 35 NNNNNNNNNN .............................. GAACTCAACCTGACCACCGACGCCTTTGAGCCGAA 3414925 30 100.0 36 NNNNNNNNNN .............................. AATCTCCGATACTCCGACTGTCTGATTCCGTATCCG 3414991 30 100.0 33 NNNNNNNNNN .............................. GACCGTCGTGCAACAGCGGAGTACTACGACGGG 3415054 30 100.0 34 NNNNNNNNNN .............................. GCCGGTCGATCACGCCGACCGTGTGGCCCGTACG 3415118 30 100.0 34 NNNNNNNNNN .............................. TTCCAGAACGTCGCGCACGAGCTGCATCTGTACC 3415182 30 100.0 34 NNNNNNNNNN .............................. GGACTGTTTGTCGGTCATACGCCACCGTGAGTGG 3415246 30 100.0 35 NNNNNNNNNN .............................. ACTGCAGACCCTGTTGACAACAGAGACGTGCTCGA 3415311 30 100.0 33 NNNNNNNNNN .............................. ACTGCAGACCCTGTTGACAACAGAGACGTGCTC 3415374 30 100.0 37 NNNNNNNNNN .............................. CGACAGAAGCGAGTCAAAGAAGACTGGCTCGAAGTGC 3415441 30 100.0 36 NNNNNNNNNN .............................. CCCTGGTGTTGGACCAAACCGGATCAGCCGAGAGCC 3415507 30 100.0 37 NNNNNNNNNN .............................. TTCTACTGCACGCGTTGTGAGAAACTGACTTCGCCAG 3415574 30 100.0 32 NNNNNNNNNN .............................. AGCTCCTCGACGAAGCGACCGATACCTTCCTC 3415636 30 100.0 36 NNNNNNNNNN .............................. TTCCCCGGGTCGTTACTCATCGTCCTCACCCCAGAC 3415702 30 100.0 38 NNNNNNNNNN .............................. CGGCTGTTATCACGTCGGCACTGTCGAACCTTGTGGGT 3415770 30 100.0 36 NNNNNNNNNN .............................. CCACCACTTGTTCGCCTTTCGCGTGCGTGTGCCCGT 3415836 30 100.0 38 NNNNNNNNNN .............................. AAACAAGGCCACTGGATCGCCCACGACGATGGCGTCGA 3415904 30 100.0 36 NNNNNNNNNN .............................. TCTCTACCGGCAACGCATATCTCGAATTGTGGGATT 3415970 30 100.0 34 NNNNNNNNNN .............................. CCTGGCTGTTGATCTCCTTGTTCGTGAGGAACGC 3416034 30 100.0 38 NNNNNNNNNN .............................. CTTGTTGCGAAGCGCTCTCCGGTACGTCTCCGGGTCGA 3416102 30 100.0 36 NNNNNNNNNN .............................. ATCACTGTCCGACAGTTGATGCGCCGCGACCACGAC 3416168 30 100.0 33 NNNNNNNNNN .............................. ATGGTTACTGGGTCTCTGGACTTTTGATAAACC 3416231 30 100.0 35 NNNNNNNNNN .............................. CCCACCCCGTCGCGTACGCCAGCGGCCGCTGGACC 3416296 30 100.0 36 NNNNNNNNNN .............................. ACCGATCACCCAGACTACGCAGAAGCCGACGAACAC 3416362 30 100.0 37 NNNNNNNNNN .............................. CCAACCACACGTCACTCATACAGACCCACCTCGGAAT 3416429 30 100.0 37 NNNNNNNNNN .............................. TCCCCGTCGTCGGGCAACAGCGGGGCCGCTTCGTCAC 3416496 30 100.0 35 NNNNNNNNNN .............................. CCGCCGTCGTGAGACCACGAGAACGACCCATACCC 3416561 30 100.0 37 NNNNNNNNNN .............................. CGTCGGGACCGTCACGTCTTTCTGGGCGTGAACGACC 3416628 30 100.0 37 NNNNNNNNNN .............................. ATCGGTCGCTCACCTCATCGAGAGTGGCCGTTAGGAC 3416695 30 100.0 35 NNNNNNNNNN .............................. TACGTCATGGGGGTGATCTGGGACTGATGAGCCTC 3416760 30 100.0 35 NNNNNNNNNN .............................. CCTCCGGTCCTTTCGCGGCCGCTCGCACCGACGCC 3416825 30 100.0 37 NNNNNNNNNN .............................. TTTCGTCGTCATCTGCATTTGCTACTGATTGGTGGCA 3416892 30 100.0 34 NNNNNNNNNN .............................. CAAGAACAGGCCGAGAAGTGGTTTGAAAAGCATC 3416956 30 100.0 37 NNNNNNNNNN .............................. GTCCGTCACGGCCGTATCATCGGTTTCGAGGTGCGTC 3417023 30 100.0 34 NNNNNNNNNN .............................. AGCACCCCGAGCACCCCCGAAAGCACCCCGGACT 3417087 30 100.0 37 NNNNNNNNNN .............................. GTTGACTCATGGCGTCGACGAAAACCTCCTTACACCG 3417154 30 100.0 33 NNNNNNNNNN .............................. GCATTGACGTAGCCAATGCCGGCCTGTGGGATT 3417217 30 100.0 35 NNNNNNNNNN .............................. GCCTACCACCCGCAGGGCGACCTCGAGGACGAGCA 3417282 30 100.0 36 NNNNNNNNNN .............................. GTGCGATATACGCTAATTATAGTCTGTCCGGATGGT 3417348 30 100.0 38 NNNNNNNNNN .............................. CTCGAGGATGTGTGTTAGTCGGTAATCGGTCGGGTCTG 3417416 30 100.0 38 NNNNNNNNNN .............................. TCGACGCGGTCGCGAACGATCTCGAGAACGTCACCCTT 3417484 30 100.0 36 NNNNNNNNNN .............................. CTCAACCTGATCGAGACGTTCATCCACAGCGAGAAC 3417550 30 100.0 36 NNNNNNNNNN .............................. CGAGGTGACGGTCAACGGCGTCCCCGGCTACGGGTC 3417616 30 100.0 35 NNNNNNNNNN .............................. GTGTTGCCATATTTCGTCGCCGTTGTCGGCGTCGG 3417681 30 100.0 37 NNNNNNNNNN .............................. GCGGTATTCGAGTTCTCGACCGTCGTCTGATCGTCGT 3417748 30 100.0 34 NNNNNNNNNN .............................. TTCGCGCACGAAAAGCAGAAGTGGAAGTACAGGC 3417812 30 100.0 34 NNNNNNNNNN .............................. TCGAGTAGTGTAGCCCAACGGCCAGCCAAAACTA 3417876 30 100.0 38 NNNNNNNNNN .............................. TCCCGTCTGTTCGACGAGATACAACGCAACCTGCTCGC 3417944 30 100.0 37 NNNNNNNNNN .............................. CGAGATACGCCCCGAATTTCGACACCGTAGTACGCCC 3418011 30 100.0 37 NNNNNNNNNN .............................. CTCTCGGAGTGTGCGGGTTGCCGTGGGGTCCTCGGAT 3418078 30 100.0 36 NNNNNNNNNN .............................. TCGATACGATACGGCGAAAAGAAGGAACGACTTCGA 3418144 30 100.0 36 NNNNNNNNNN .............................. CAACAGTTAAGGGGGATCACCCAGGCGGTCGATCAA 3418210 30 100.0 37 NNNNNNNNNN .............................. ACCACGTTTGTGTCGCGCCGCCTTATAGATAACGGCG 3418277 30 100.0 38 NNNNNNNNNN .............................. ATCCGACTCACCGTCTCATCGTCAAGCGACATAACCGG 3418345 30 100.0 35 NNNNNNNNNN .............................. TCCGAACGCATCGAAGCCAAACAGACATCCCGCTC 3418410 30 100.0 37 NNNNNNNNNN .............................. TCGCGTTGTGGACGAAAGTCAAACTCCGCTATCGCGA 3418477 30 100.0 37 NNNNNNNNNN .............................. TGGCTGAGATAGACCGTGTTACGGTCGAACCCACCAC 3418544 30 100.0 35 NNNNNNNNNN .............................. AACTACGTCTTCGGTCTGTCGAGTAACACTGTAGT 3418609 30 100.0 35 NNNNNNNNNN .............................. ATGCGGTACTACGACTTCATCCACCCCGAGGACGA 3418674 30 100.0 36 NNNNNNNNNN .............................. GAACAGTCGGGACCAACCAGCGCGACGTCGTCGAGA 3418740 30 100.0 37 NNNNNNNNNN .............................. AACCGGACTCGTGGCGTACTCCCACGGCCGGTCAAGA 3418807 30 100.0 35 NNNNNNNNNN .............................. GTGCGGTGCCGAGTCGCTGGACGTGCGCATCTCCG 3418872 30 100.0 35 NNNNNNNNNN .............................. GATGTTGTCCGTTATCTCAGACCAACACTCTTCGG 3418937 30 100.0 37 NNNNNNNNNN .............................. GTCTTCGCAGCCGCCACAGTAGCGCTGGACTGCCCCG 3419004 30 100.0 35 NNNNNNNNNN .............................. CTGACCGACGACGTCCGCGTCTGGACGGTCGACCC 3419069 30 100.0 35 NNNNNNNNNN .............................. CCGGACAGGTTTCCGGAGGTGGTACTGCGTCAGCT 3419134 30 100.0 36 NNNNNNNNNN .............................. CAGCGGTGACCATGGCGTCTTCGGGGTCGGATAAGT 3419200 30 100.0 35 NNNNNNNNNN .............................. GCGATCGGGGACTCGAGTGCGGTGTTCGTCGACGA 3419265 30 100.0 33 NNNNNNNNNN .............................. TGGGTCTGGGTCGAGATGACGTCCAGGACCGGG 3419328 30 100.0 37 NNNNNNNNNN .............................. ATCTTGTCGCGCACCTGCTCGGGATCGAGGACGTCGG 3419395 30 100.0 35 NNNNNNNNNN .............................. TCGGTGAGGTCGCGCGTCCAGATCGACGAGCCGAG 3419460 30 100.0 36 NNNNNNNNNN .............................. CCCGCAGTCGGTACACTCGCCGTAGGTCCCGATCCG 3419526 30 100.0 32 NNNNNNNNNN .............................. GTCTCGTCGAACATCCATTCGGGCCTCTACGA 3419588 30 100.0 37 NNNNNNNNNN .............................. CTGACCGACGACGTCCGCGTCTGGACGGTCGACCCGG 3419655 30 100.0 36 NNNNNNNNNN .............................. TCGTCCTGCTGGCGGTGCTCTTGCTGACGGTCTACG 3419721 30 100.0 36 NNNNNNNNNN .............................. CTCGAGCCGGGCGAGTCGCTGCTGGACGTAGCCGCG 3419787 30 100.0 33 NNNNNNNNNN .............................. CCGTATACCTTCGACGGCAGTGGCGACGCGCCG 3419850 30 100.0 34 NNNNNNNNNN .............................. GAGGTTGACGTGGCCGGGGATTGCACGGCGGCCG 3419914 30 100.0 36 NNNNNNNNNN .............................. CTGGCGAGGGTCCGAGTGTCGGATTCGCAGGTCGAA 3419980 30 100.0 36 NNNNNNNNNN .............................. TTCAATCTCGCCCTGGATACGTTCGACGGCGTCCTC 3420046 30 100.0 34 NNNNNNNNNN .............................. CTCGTCGCTCACAGCGACGACTACGGCGGCGGCG 3420110 30 100.0 36 NNNNNNNNNN .............................. TAAGGAAAGGGATGGGACGCCTCGGAATTGAACCGA 3420176 30 100.0 36 NNNNNNNNNN .............................. CTCGAGGCCGCCGGCTTCGGTGCGCAGGTCGATTGA 3420242 30 100.0 35 NNNNNNNNNN .............................. CTCGTCGGCTCGGACAAGGCGAGCGTCCGGCGGCT 3420307 30 100.0 36 NNNNNNNNNN .............................. GTTCGTTACCTGCAGGTCGGTTAACGGCAGGTACGG 3420373 30 100.0 33 NNNNNNNNNN .............................. TCGCTCTCGCCGATGGAAGTCGAGCCGCCGACC 3420436 30 100.0 38 NNNNNNNNNN .............................. ATGCAAGATAAACTCGAAATGGCAAAGAACGCCGGCAT 3420504 30 100.0 37 NNNNNNNNNN .............................. CTGTGTTTCGCAAACGACACGGCCACCTTCGGTCCGC 3420571 30 100.0 35 NNNNNNNNNN .............................. CTCATCGTCGGCCGGTTCGGGGGTGAGTGATCGTG 3420636 30 100.0 37 NNNNNNNNNN .............................. ACTTTATAGACCTCTTTTCGCTCCTGTTCGTCGACTT 3420703 30 100.0 34 NNNNNNNNNN .............................. GAACTCGACTTCCGCGAGCGGTCCGACGACGCCG 3420767 30 100.0 36 NNNNNNNNNN .............................. TACTGAAACTGGAATAGACTAAGCCAGTAGCAGCAC 3420833 30 100.0 36 NNNNNNNNNN .............................. GTGACCTCGTCCTCGTCGACCTCGGTAATTTGCTGT 3420899 30 100.0 37 NNNNNNNNNN .............................. CTCCCGAATATCGGTCTTCGTTTCGCTCGTTTCACTC 3420966 30 100.0 34 NNNNNNNNNN .............................. GACCATTTCTGGCCGGCCGACTTCGGCTCGGCCT 3421030 30 100.0 36 NNNNNNNNNN .............................. GGGTTCGGAGTGCTGGTCGTAGAGGACGTGATGGTC 3421096 30 100.0 34 NNNNNNNNNN .............................. GAAGATGAGGACGGCGAGTTTGACGCTGAAGCAC 3421160 30 100.0 36 NNNNNNNNNN .............................. GACATCGAGCGGGAGACAGATGCCGGATGCGGAGAT 3421226 30 100.0 1 NNNNNNNNNN ................T.G...TA.ATCTT NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 124 30 35 GTTTCAGACGAACCCTCGTGGGGTTGAAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,7] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTTCAGACGAACCCTTGTGGGTTTGAAGC with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-6.20,-5.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [48.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [413,197] Score: 0.18/0.18 # # Final direction: F [1.46,0.64 Confidence: MEDIUM] >NC_019779 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 777252 37 100.0 35 GGGTACCAGT ..................................... TTCTGCACGGTCAATGCGTGGGCGGGGTGACCCAA 777324 37 100.0 34 GGTGACCCAA ..................................... GCCCAATCCTTATTGTAATGTGTAGGGAAGAATT 777395 37 100.0 36 GGGAAGAATT ..................................... TGTAGGAGAAAAGAAAAAAGCCCGACTCGTTAAAGC 777468 37 100.0 37 TCGTTAAAGC ..................................... TAAAATCCTATATAGAATTAAAACTTCTATCTTAATT 777542 37 100.0 41 TATCTTAATT ..................................... CCATTTATTGTGAGGGTTTCTTCGTTCCTCCAGATAGCCGA 777620 37 100.0 40 AGATAGCCGA ..................................... TGTGGTATATGTTTCTTTGAGCGCGATCGTTTAATCCCTA 777697 37 100.0 34 TTAATCCCTA ..................................... TCATATTGGAGGCGCACCTTATACGCATCCCCAG 777768 37 100.0 35 GCATCCCCAG ..................................... ACAAGGGAATTAGCACCCACAGCACCCGCCGAACA 777840 37 100.0 34 CCGCCGAACA ..................................... ATCTGGGATTCCCTCCACATCAACTCCTAAATCT 777911 37 100.0 TCCTAAATCT ..................................... AACAGGTGATG ========== ====== ====== ====== ========== ===================================== 10 37 36 GTTTCAATAAACCTAATCCCTTCCTAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.16%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.50,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [8263,48] Score: 0.18/0.18 # # Final direction: F [0.55,0 Confidence: HIGH] >NC_019780 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1355912 28 100.0 31 NNNNNNNNNN ............................ GGTGACGTTTCCCTTCACCCAACCTACTTTT 1355971 28 100.0 43 NNNNNNNNNN ............................ AGTTACGCTTGGCTTCACTAGGGCCTACTTTTTAACTACTTTT 1356042 28 100.0 32 NNNNNNNNNN ............................ GGTTACGCTTGGCTTCACTAGGGCCTACTTTT 1356102 28 100.0 32 NNNNNNNNNN ..T......................... GGTTACGTTTGGCTTCACTAGGGCCTACTTTT 1356162 28 100.0 31 NNNNNNNNNN ............................ GGTTACGTTTCCCTTCACCCAACCTACTTTT 1356221 28 100.0 1 NNNNNNNNNN ............................ NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 6 28 33 TAACTTCACTTGACATTCTTTGGTGTTG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.29%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1212,85] Score: 0.18/0.18 # # Final direction: F [0.86,0 Confidence: HIGH] >NC_019780 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 2763290 20 100.0 37 NNNNNNNNNN ..T.....T.CCG....... TGAAATGGATGACGATCACGACGACGATGACGACGAC 2763347 20 100.0 19 NNNNNNNNNN .................... TGACATGGATGACGACGAC 2763386 20 100.0 31 NNNNNNNNNN .................... TGAAATGGATGACGACGACGATGACGACGAC 2763437 20 100.0 28 NNNNNNNNNN .................... CGAAATGGATGACGATCGCGACGACGAT 2763485 20 100.0 19 NNNNNNNNNN ..T.....T.CCG....... TGAAATGGATGACGACGAT 2763524 20 100.0 31 NNNNNNNNNN .................... CGAAATGGATGACGATCGCGATGATGACGAT 2763575 20 100.0 31 NNNNNNNNNN ..T.....T.CCG....... TGAAATGGATGACGATCGCGATGATGACGAT 2763626 20 100.0 31 NNNNNNNNNN ..T.....T.CCG....... TGAAATGGATGACGATCGCGATGATGACGAT 2763677 20 100.0 28 NNNNNNNNNN ..T.....T.CCG....... TGAAATGGATGACGACGACGATGACGAT 2763725 20 100.0 31 NNNNNNNNNN ..T.....T.CCG....... CGAAATGGATGACGATCGCGACGACGATGAC 2763776 20 100.0 19 NNNNNNNNNN ..........C.G....G.. TGGAATGGATGACGACGAC 2763815 20 100.0 19 NNNNNNNNNN .................... TGAAATGGATGACGACGAC 2763854 20 100.0 43 NNNNNNNNNN .................... TGAAATGGATGACGACGACGATGACGATGACGATGACGACGAC 2763917 20 100.0 22 NNNNNNNNNN .................... TGAAATGGATGACGATCGCGAC 2763959 20 100.0 22 NNNNNNNNNN .................... CGAAATGGATGACGATCGCGAC 2764001 20 100.0 22 NNNNNNNNNN .................... CGAAATGGATGACGATCGCGAC 2764043 20 100.0 19 NNNNNNNNNN .................... CGAAATGGATGACGACGAC 2764082 20 100.0 43 NNNNNNNNNN .................... TGAAATGGATGACGACGACGATGACGACGATGATGACGACGAT 2764145 20 100.0 19 NNNNNNNNNN .................... TGAAATGGATGACGACGAC 2764184 20 100.0 31 NNNNNNNNNN .................... TGAAATGGATGACGATCGCGATGATGACGAT 2764235 20 100.0 28 NNNNNNNNNN ..T.....T.CCG....... TGAAATGGATGACGATCGCGACGACGAC 2764283 20 100.0 37 NNNNNNNNNN .................... TGAAATGGATGACGATCGCGATGATGACGATGACGAT 2764340 20 100.0 28 NNNNNNNNNN ..T.....T.C.G....G.. TGGAATGGATGATGATTCCGACGACTCT 2764388 20 100.0 28 NNNNNNNNNN A.......T.C.G....G.. TGGAATGGATGATGATTCCGACGACTCT 2764436 20 100.0 1 NNNNNNNNNN A.........C.G....T.. NNNNNNNNNN ========== ====== ====== ====== ========== ==================== 25 20 27 GACGATGACTATCTAGAAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [10-19] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [160,159] Score: 0/0.18 # # Final direction: F [0.41,0 Confidence: MEDIUM] >NC_019780 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 347586 31 100.0 25 NNNNNNNNNN ............................... TCAATAATTGTGGAGTAGATATTTT 347642 31 100.0 24 NNNNNNNNNN ............................... ATAATTAGGACGAAGGACAAAAAC 347697 31 100.0 1 NNNNNNNNNN ............................... NNNNNNNNNN ========== ====== ====== ====== ========== =============================== 3 31 24 GTAGGTTGGGTGGAGGTAACGAAACCCAACA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [10,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-1.70,-1.50] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [90,83] Score: 0/0.18 # # Final direction: F [0.37,0 Confidence: MEDIUM] >NC_019780 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 963104 24 100.0 24 NNNNNNNNNN ............G.....C.AA.A TGTAGGTTGGGTGGAGAGAAACGA 963152 24 100.0 19 NNNNNNNNNN ........................ GTTGGGTGGAATGAAATGT 963195 24 100.0 19 NNNNNNNNNN ............G........... GTTGGGTGGAATGAAATGT 963238 24 100.0 19 NNNNNNNNNN ............G........... GTTGGGTGGAATGAAATGT 963281 24 100.0 26 NNNNNNNNNN ........................ AAAGTAGGTTGGGTGGAATGAAATGT 963331 24 100.0 19 NNNNNNNNNN ........................ GTTGGGTGGAGAGAAACGA 963374 24 100.0 19 NNNNNNNNNN ........................ GTTGGGTGGAATGAAATGT 963417 24 100.0 1 NNNNNNNNNN ................ATG.CC.A NNNNNNNNNN ========== ====== ====== ====== ========== ======================== 8 24 20 AACCCAACAACAATCAGAAAGTAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.50%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [5-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [26,54] Score: 0/0.18 # # Final direction: F [0.41,0 Confidence: MEDIUM] >NC_019780 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 2987803 25 100.0 29 AACGTCTCCA ......................... TAGATCAAAAGTAGGTTGGGTGCAGCCAG 2987857 25 100.0 29 GTGCAGCCAG ......................... TAGATCAAAAGTAGGTTGGGTGCAGCCAG 2987911 25 100.0 GTGCAGCCAG ......................... CAATTACCCT ========== ====== ====== ====== ========== ========================= 3 25 29 CGCCAAACCCAACACTAATTATAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [175,535] Score: 0.18/0.18 # # Final direction: R [0,0.18 Confidence: MEDIUM] >NC_019780 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================== ====== 480964 22 100.0 26 NNNNNNNNNN ...................... TCACTAGGGCCTACGGCTACGAATAT 481012 22 100.0 19 NNNNNNNNNN ...................... TCACCCAACCGACGACTAT 481053 22 100.0 19 NNNNNNNNNN ...................... TCACCCAACCGACGACTAT 481094 22 100.0 1 NNNNNNNNNN ..G..........A........ NNNNNNNNNN ========== ====== ====== ====== ========== ====================== 4 22 21 GGTGTTGGGTTACGTTTTCACT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.55%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [140,18] Score: 0.18/0.18 # # Final direction: F [0.59,0 Confidence: HIGH] >NC_019793 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================== ====== 2503904 26 100.0 22 NNNNNNNNNN ............A....C........ CAACGACCGAGGCAGTGACCGT 2503952 26 100.0 19 NNNNNNNNNN .......................T.. CGGCGCCGCGCCGCGTGAA 2503997 26 100.0 25 NNNNNNNNNN .......................... TGGCGGCGACCGAGGCAATGACCGT 2504048 26 100.0 19 NNNNNNNNNN ...........C..G........... TGGTGGCGCTCCGCGTGAA 2504093 26 100.0 22 NNNNNNNNNN .....G..T..C.....C........ CAACGACCGAGGCAGTGACCGT 2504141 26 100.0 19 NNNNNNNNNN .......................... CGGCGCCGCGCCGCGTGAA 2504186 26 100.0 25 NNNNNNNNNN .......................... TGGTGGCGACCGAGGCAATGACCGT 2504237 26 100.0 1 NNNNNNNNNN ...........C..G........... NNNNNNNNNN ========== ====== ====== ====== ========== ========================== 8 26 21 GGTGGTTTCCGTCCCCGTGAAGACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.60,-2.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [3-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [33.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [409,251] Score: 0/0.18 # # Final direction: R [0.41,1.01 Confidence: MEDIUM] >NC_019892 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 474123 36 97.2 36 GATGCCACGC ...............................A.... GGGAATTGTTCGCGCCCAGGCAAATCTCGGGTTGCA 474195 36 100.0 37 TCGGGTTGCA .................................... ATCGACCGGTAGATCCGGTGGCCATCTAGGTTGAGCG 474268 36 100.0 36 AGGTTGAGCG .................................... CCAACGAGGAATCATGAGCGTGGACGGCGTGAAGAG 474340 36 100.0 36 GCGTGAAGAG .................................... GAGTCCCGCGAGATCGGAATGCCGCGCGGGGATCGG 474412 36 100.0 36 CGGGGATCGG .................................... GGAAGCCCCCTCCGACACCGGGCTCCTCTCAAAAAG 474484 36 83.3 38 TCTCAAAAAG .................A.......TT......--- AGCTTGATATGAGAATGCGTTGTGTTTTTTTTAGTGGT 474558 36 100.0 35 TTTTAGTGGT .................................... GTTCCACTCCGGCGAGGGGTCGAGCAAGGCTTCAA 474629 36 100.0 37 AAGGCTTCAA .................................... CCGAAGTTATCCGCGGTGGGCGGGGCCGGGCGGAAGC 474702 36 100.0 35 GGGCGGAAGC .................................... ATTCGATACGCTGAATCTCCTGCCTCGCCTCACTT 474773 36 100.0 37 CGCCTCACTT .................................... TCGAGCTGCTTACGGGCGAGCTGCCCCTCTGGGGAAG 474846 36 100.0 41 TCTGGGGAAG .................................... GCCTTGGGGTCGACGGGCTTGACAAGGAACCGCTCGGACAT 474923 36 100.0 37 GCTCGGACAT .................................... CGGCAGCGACGGGAGCGTTTGGTCGAGATGGGATCGA 474996 36 100.0 35 ATGGGATCGA .................................... CGGATTGCCCCCCCACCCGATGGATCGGGTGGGGG 475067 36 97.2 34 CGGGTGGGGG .G.................................. TTATCACCATCGCCTGGCTTCAGGGTCGCATGCA 475137 36 100.0 35 GTCGCATGCA .................................... GAGAAGGAACGCGCGCTCGAGCTTCGCGACACGAT 475208 36 100.0 35 GCGACACGAT .................................... TCGTGTCGGAGACACTCCTAGTTCAGCCGCCAGAA 475279 36 100.0 36 GCCGCCAGAA .................................... AAATAGTACGAGTTTGAGGAGGAAGCACGATATCTG 475351 36 100.0 36 ACGATATCTG .................................... CTTCTATAACTTCGTCAACAAAGACGCCCAGAGCTA 475423 36 100.0 41 CCCAGAGCTA .................................... AAGACGTGACTTGGCATAGACTCCGTCATACCTTCGGAAGC 475500 36 100.0 36 CTTCGGAAGC .................................... CTCCATAGTGGCGGCGGGTTTGGCGAGCAGCACAGC 475572 36 100.0 34 GCAGCACAGC .................................... GATCCTCGCCAGAGGACTCGATCGAGAATTGAAG 475642 36 97.2 38 AGAATTGAAG ..........T......................... ATCACGATACTCGACCTTGGCATTGGCGCAGTCGACAT 475716 36 97.2 35 CAGTCGACAT ................A................... CCTGTGCGTGCGCGTCACGTGTACGTGCGTGCGTA 475787 36 100.0 34 TGCGTGCGTA .................................... TCTGCGAAGCGGTGTAATAATCGAAGCCATGTTC 475857 36 97.2 35 AGCCATGTTC .............................C...... CTTCAATGGCGAAGTCCTCGCCCAGGTCGATGGCC 475928 36 100.0 37 GTCGATGGCC .................................... AGCCTACCGGCCTCTGACTCGGTTCGAGGATCTGAAG 476001 36 100.0 34 GGATCTGAAG .................................... GCTGAGCTGCGAGAGCGCCAGGATTGGCATGTTG 476071 36 100.0 35 TGGCATGTTG .................................... ACCTCCAGCGAACGAGCGAGCAGGTATGCCTGATC 476142 36 100.0 37 ATGCCTGATC .................................... ACAACCTGATATGCGAGCAGGCTGTGCTTGCCCATGT 476215 36 100.0 36 TTGCCCATGT .................................... GGACGACGCGCGGTCCCTCGCGATCAGGTTTGCCGT 476287 36 100.0 34 GGTTTGCCGT .................................... TTGAACTCTTTGTTGATAGACTTGTCGGCTTTCA 476357 36 100.0 37 TCGGCTTTCA .................................... CGGCAACGCTGGGATAGAGTTGGGTCTGGTAACGCCA 476430 36 100.0 37 GGTAACGCCA .................................... GCAGCGTGACGGTGCCGATCGCTACTTTCTGCTCGCT 476503 36 100.0 38 TCTGCTCGCT .................................... CATATCCTCGATTGGGCGGCCGATCTCGGCTATCCCGA 476577 36 100.0 35 GCTATCCCGA .................................... AAGCGAGGTTGCGTAGGGGTTCTTCACTGGGATAT 476648 36 100.0 35 ACTGGGATAT .................................... AGAAACGACTGTTTTGACTACGGCGACTTGGCCGT 476719 36 100.0 35 ACTTGGCCGT .................................... GAGTTGAGCACCGGGTCAGCCCGGATCATGCTGAC 476790 36 100.0 34 TCATGCTGAC .................................... AAAAGGGTCGTGATCCGTGGGGCCGGCGGCGTCT 476860 36 100.0 36 GGCGGCGTCT .................................... CCAGTGGCTCGTGTCGGCGGAGTATGGAGGTAGGAA 476932 36 100.0 37 GAGGTAGGAA .................................... AGCGATGGAGAGCGACCAATACACTGCGTCTGAGGAG 477005 36 100.0 35 GTCTGAGGAG .................................... AAATCGGAGACGGAAAGCAGGTTCCGCGACGGGAG 477076 36 100.0 34 GCGACGGGAG .................................... ATCCAAGCGATGCCGGTTTGCCGCTTGGAGAGAT 477146 36 100.0 36 TTGGAGAGAT .................................... CCCACAGGTGTCACCGCGCAGGCCGATGGGCAGGAT 477218 36 100.0 34 TGGGCAGGAT .................................... AGTACGCGACCGAGGCGAGAGACGGCTACACGGT 477288 36 100.0 36 GCTACACGGT .................................... TTAGTCGCCATCGGTTTCTAAGTTTCAGCTTACGCT 477360 36 100.0 35 AGCTTACGCT .................................... CTACGACGGCTGAATCCGAAATCTATGGTCGGGCT 477431 36 100.0 35 TGGTCGGGCT .................................... CTCGGCCTTGAGCCGTTCGATCATCGCGGCGAGCT 477502 36 100.0 36 GCGGCGAGCT .................................... GTCGTCGAGGTCGACCAGGCTGGCCGAATTGCGGAG 477574 36 100.0 37 AATTGCGGAG .................................... CCTGGCTCACCAGGGCCAGGGCGAGTAGGAGGACGTG 477647 36 100.0 36 GGAGGACGTG .................................... AGGCGTTTCCCGGTCCGTCCAGGACGCCACGGATGG 477719 36 100.0 35 CCACGGATGG .................................... TCACCCGATCAGGTGTTCAGACCCGGCCCGGGACT 477790 36 100.0 40 GCCCGGGACT .................................... CCGCGGCCAACTCGCTCTTGGCGTCCCGGTAGAATGCCGC 477866 36 100.0 36 AGAATGCCGC .................................... GCCGCAACCGCAATCGTGGTTCGAGCTCGGCGCCGC 477938 36 100.0 36 TCGGCGCCGC .................................... AGGCGGCCTCTCCCCCTCTCTCTGGCTCGCCGTTGC 478010 36 100.0 36 TCGCCGTTGC .................................... TCCGGACCTGGAAGATATCACCAAGCCTGGATGCGT 478082 36 100.0 35 CTGGATGCGT .................................... AGCCTGGTGATCGTCACCGGCCCGGGGCAGACGGT 478153 36 100.0 35 GGCAGACGGT .................................... GAGGTCCCCGTGACGGCCGAATCCACGTTTGCCGG 478224 36 100.0 37 CGTTTGCCGG .................................... ATTTTGCCGAGCCGGATGACAATCCCGCCGAAGCCCT 478297 36 100.0 37 CCGAAGCCCT .................................... GGCGGTGAATGCTCGATTCCGATCCCGTGCCCGACCT 478370 36 100.0 36 TGCCCGACCT .................................... GCATCGTCCGACCAGATTGTTGCCGCGACTTGACCT 478442 36 100.0 40 GACTTGACCT .................................... ACACCGCAATCACCCAGATCACGACCGGCGCATCGAACCT 478518 36 100.0 36 CATCGAACCT .................................... GGGGTTTCTACGCGCGGCTCACCGGCTCGGCGAACC 478590 36 100.0 34 TCGGCGAACC .................................... ACCTCCACCAGACCGTCGCGATCCGAACCGAGAT 478660 36 100.0 34 GAACCGAGAT .................................... AGCGGGCGGGCTCCGCTTGGATTTCCCGGGCGAT 478730 36 100.0 35 CCCGGGCGAT .................................... CCCGAGGAAGTTGGGCCGACGGCCGCCGACGGCTT 478801 36 100.0 35 CCGACGGCTT .................................... GTTTTTGCGTTCAACTCGTTCTCTTGTTCGTTCGT 478872 36 100.0 36 GTTCGTTCGT .................................... CTTCGCCAGCTTGTCTTTCGCCTGCTCTGTGATCCG 478944 36 100.0 34 CTGTGATCCG .................................... TTCGGCTTCGGAACGACTATCACGATCTTGCCGA 479014 36 100.0 34 ATCTTGCCGA .................................... AAACGCCATCCGTGATGGGATAAAGCGCAACGAC 479084 36 100.0 36 GCGCAACGAC .................................... CGGCACCGGCCGGGTCGGGCCCGTCGTTGTCGTCGT 479156 36 100.0 37 TTGTCGTCGT .................................... CCAAGCCGCGCGGATCTACCGCAAGGCGATGGAGGCT 479229 36 97.2 36 GATGGAGGCT ............................A....... ACCGCCGTCATTGATCGTCCAAAATTTAGGCGACAA 479301 36 100.0 37 TAGGCGACAA .................................... ATGCGCGGGTACAAACCGGGCAAGGCATCGGGTGGAG 479374 36 100.0 37 TCGGGTGGAG .................................... CGGTCGGACCTGGCTTATCCACCTCCTGGCCGATCGA 479447 36 100.0 35 GGCCGATCGA .................................... GGCCAACTCCGGGCCGGCTCGAGGAGATCGCTTGC 479518 36 100.0 36 GATCGCTTGC .................................... ATCACCGATGAGGGTGTTTGGCCAGCCACCGGCCAG 479590 36 100.0 38 CACCGGCCAG .................................... CCTGTAGTGCCGCAGTCCCCGCAAGGGCTGGAGTAACT 479664 36 100.0 35 TGGAGTAACT .................................... CGGACGAAGCTACCCACAGGGGAAGCCATGTCTTC 479735 36 100.0 36 CCATGTCTTC .................................... CCTTCAGGGTGCCGTCCTGGTACATGCGGAAGAGTT 479807 36 100.0 35 CGGAAGAGTT .................................... ACGTCACCGGAAGGCCGGGCAATCTGGCGTGAATT 479878 36 100.0 35 GGCGTGAATT .................................... TCGGAAAACTCTCCTTCGAGCGCCTGAGCGGCTGA 479949 36 100.0 36 GAGCGGCTGA .................................... ATCATGAACGGTAATTGGCTCGTAAATAAGAACGTT 480021 36 100.0 38 TAAGAACGTT .................................... ACGAGCTGCCTGGGGGCATTCGAGACCGACGAGAGGTC 480095 36 100.0 37 ACGAGAGGTC .................................... TGTCCTTTCGCAGACATCTTGCGAGCGTAAGTCAAGG 480168 36 100.0 37 TAAGTCAAGG .................................... CCACGGATCCACCCAGCAACCTCGCTCATGCGCACCC 480241 36 100.0 34 ATGCGCACCC .................................... CCGATCCCCGACGAGACGGTGTAAGCCGACGCGT 480311 36 100.0 38 GCCGACGCGT .................................... ACGGCCCCAACCAGGCATGGCAAATCTTGGGGCAGCAT 480385 36 100.0 35 GGGGCAGCAT .................................... CCAGCTCCCGAAGTCTACCGCGATGGGATGGGCTA 480456 36 100.0 36 GGATGGGCTA .................................... GAGTGCTTGCGTAGCCATAACCAGGGCTGTGGGCAG 480528 36 100.0 38 CTGTGGGCAG .................................... CCCGACATTCCGGAGCCATCCGGCCCGTTTTATTCGAA 480602 36 100.0 38 TTTATTCGAA .................................... CCTGACGGCCCAATCTCGGCCGCCCAGGGTCAGGCAAC 480676 36 100.0 36 GTCAGGCAAC .................................... GTCGATCCTCGCGTCACGAGGCGTCGACCAGCGAAT 480748 36 100.0 36 ACCAGCGAAT .................................... GCGAGGCGACGCACCGCTGCAGGTCCGCCTTTGACA 480820 36 100.0 38 GCCTTTGACA .................................... CTCTACGACGGCAACGCGCCCGCGACGGCGAACACCGA 480894 36 100.0 36 CGAACACCGA .................................... ACGGATCCGGACTTGGTCCTTGAGCAGCTTACGAAG 480966 36 100.0 34 GCTTACGAAG .................................... CCGGAGAACGCGTGTGTGGTCGGACCGGAATCGG 481036 36 100.0 35 CCGGAATCGG .................................... GAGAGTGAGGATCGGGAACGCGAGCAACACCAGGC 481107 36 100.0 35 AACACCAGGC .................................... GATAATCATCGCGCTGGTCGTTTCGGCGGTCGCCG 481178 36 100.0 40 GCGGTCGCCG .................................... GCGATCGCCTCGAAGATTTGGCGGTGGCGGGCCGCAAGTT 481254 36 100.0 39 GCCGCAAGTT .................................... CCAACGACTCTCGCGGTCAGCCAACTCGGCGTTGGTCGT 481329 36 100.0 37 CGTTGGTCGT .................................... AGAGACAGCGCTTTGGCTTCCTGAACCGCTTCGGAAT 481402 36 100.0 35 GCTTCGGAAT .................................... GGTATCGTCGCGGGCCTCGATATCCTTGTTCGTAG 481473 36 100.0 34 TTGTTCGTAG .................................... GACTCCGTTGCGGAGTTCGTCCCTAGGCGACCTG 481543 36 100.0 39 AGGCGACCTG .................................... CCAGAACGCCATCACTAGATCATTCCAGTTGCCGAAGAT 481618 36 100.0 36 TGCCGAAGAT .................................... CAACCCATGTTTGCAGAAACACGCGACCTTCTTCGA 481690 36 100.0 37 CCTTCTTCGA .................................... ATCATCTTCGGCGACTCGGCCGGCACGATCATCGCGG 481763 36 100.0 34 ATCATCGCGG .................................... AAGAACAGTTCGGCGGCTGAGGCTGTGTCGTAGC 481833 36 100.0 36 GTGTCGTAGC .................................... AGGACTTGATCGGCGGCGGAAGCGCGTCCACACCCG 481905 36 100.0 36 TCCACACCCG .................................... TTCAACCATTGTTCCCCCAGCCACGAACACGACCGC 481977 36 100.0 36 ACACGACCGC .................................... TTTGGAGAAATCCAGTGAGCAATGGAAGGCAGAATT 482049 36 100.0 35 AGGCAGAATT .................................... CACCAGCAACGAGAAGTGGTAGACGTCCAAGTCGT 482120 36 100.0 34 TCCAAGTCGT .................................... TCCACGGCCGCGAGACCGAATGTCCTTTCGCAGA 482190 36 100.0 36 CTTTCGCAGA .................................... CGCACTGCACCGCCACACTTCGACGACGCGATCATG 482262 36 100.0 34 CGCGATCATG .................................... ATGGTGGGGAGAGGGACGCCCGTGGCGACCGTGA 482332 36 100.0 37 GCGACCGTGA .................................... CACCCGCCTCATCGCCGGGTTGTGGTACCCGGCGATC 482405 36 100.0 35 CCCGGCGATC .................................... AATTGGTTCATCTGCCTTCACGCCCTCATTCCGAC 482476 36 100.0 34 TCATTCCGAC .................................... CATCTCGCCGTCCTCCCACCCGGTTTCGACCGAC 482546 36 100.0 36 TTCGACCGAC .................................... GTGTCCACGGGGATGCTACCAGGAAGGGTATCACGC 482618 36 100.0 34 GGTATCACGC .................................... GCCGTGGCGCAACGCGGGTCTCCTTCAGCGGGGC 482688 36 100.0 36 TCAGCGGGGC .................................... GGTGACCCCCAAACGGATCAGCGGTGCGAAGTTCGG 482760 36 100.0 37 CGAAGTTCGG .................................... AATACGTGCCGACGATCCCGATGAAGGCCCGCCCGGT 482833 36 100.0 35 CCCGCCCGGT .................................... CCTGGACCGGTCGAGGAGTTTCTCTTGGACGAGGT 482904 36 100.0 35 TGGACGAGGT .................................... AGGTAGTTGCCGTTCCGGTCTGCCCTCATGCTCGC 482975 36 100.0 36 TCATGCTCGC .................................... TCCGCTTACCGGTGTCCAGATGACCGGAGCCCAGTT 483047 36 100.0 37 GAGCCCAGTT .................................... TCAATTCCTCTGGCTTCACTCCGAGGCCCTTCGCGAT 483120 36 100.0 36 CCTTCGCGAT .................................... GCTCAGGACGGGAGACACCGAAGCCACATCTTCACT 483192 36 100.0 39 CATCTTCACT .................................... GAAGTTGCTTGAGCGCACCCTGCCGATCACCGGCCCCGT 483267 36 100.0 36 CCGGCCCCGT .................................... GCCGTGCGATCTTGCTGTCCCTGCTGGACACGGCGT 483339 36 100.0 37 GACACGGCGT .................................... GGTGCTTGCCTTCATGCTCTATGGACTCCACCAAGAT 483412 36 100.0 36 CCACCAAGAT .................................... TCCGATCATATTCACCGGCCACTCGGTGCCGGCCAT 483484 36 100.0 36 TGCCGGCCAT .................................... CCGGCCCGCGAGTGTCGCGCGGACCTCGTCATCCGT 483556 36 100.0 38 CGTCATCCGT .................................... GCGCTCCGGCACAAGATCGGGCTCGTGATCCTCGACTA 483630 36 100.0 37 TCCTCGACTA .................................... GCGAGCGGCACCACGAGAGACCGGCAAAGTACGCGTT 483703 36 100.0 36 AGTACGCGTT .................................... AAGGTTGAAAGGCGACTTCCACGCATACACTCGCCA 483775 36 100.0 36 ACACTCGCCA .................................... GACGAGGGCCGCACTGAAGCTGAGAGAACCTATCGT 483847 36 100.0 34 AACCTATCGT .................................... CCTTCCAAACCCACAAAGGTTTCATGTTCTCGTA 483917 36 100.0 35 TGTTCTCGTA .................................... ATTTGTTACCGGCAGAGTCCTTATGCTTCTTCATA 483988 36 100.0 33 CTTCTTCATA .................................... CCAAGAGAGTTGTGGACTCGGCCACAGAAGCAA 484057 36 100.0 36 ACAGAAGCAA .................................... GATTTCCTCTTCGTCGTGGACTCTTTCAAGGCTAGC 484129 36 100.0 37 CAAGGCTAGC .................................... TCGTCACGACGGCGCGGGGCCTGGTTGGGTAGCTGTA 484202 36 100.0 37 GGTAGCTGTA .................................... TGCATGTCGTGGTCGGCCTGATGGTGCCGATCACGGA 484275 36 100.0 36 CGATCACGGA .................................... CACCCTCTCGGAGGACGGGGCGTCATCATTGAGTCA 484347 36 100.0 35 CATTGAGTCA .................................... TCGATGCCGGTCAGACGGGTGTACTCCTGAGCGAT 484418 36 100.0 34 CCTGAGCGAT .................................... AAACCGAAGGCCCCTCGATCGTCTTGCCTCGCTT 484488 36 100.0 36 TGCCTCGCTT .................................... GAAGGCCTGATCTGCGTCAATGCAGACGACCGCCCT 484560 36 100.0 35 CGACCGCCCT .................................... CAGATTGCGCAGGGGAAAGCCACGGGAGTCATACC 484631 36 100.0 34 GAGTCATACC .................................... AGAGGAGTCTCCGATTAAGCATGTGATTCCTTCG 484701 36 100.0 36 GATTCCTTCG .................................... CAAGCAATTCGACCGGATGATTCGCCGCCGGGTGAT 484773 36 100.0 33 GCCGGGTGAT .................................... ATCGCGGAACGCACCGTCGTGATCGACCGGACC 484842 36 100.0 34 CGACCGGACC .................................... CATAGCGGGACTCCACGCTGTTTGACAGTAAAAT 484912 36 100.0 38 ACAGTAAAAT .................................... GATCCCGGGCGCATGGATGCAATGCCATGCCGCCGAAT 484986 36 100.0 36 GCCGCCGAAT .................................... CCCTTCCCGCACGATCTCTTTCATCCGTGGCCCAAA 485058 36 100.0 34 GTGGCCCAAA .................................... ACGGTCGAGTTCGACGCCAAGGGGGCTCTGGCTG 485128 36 100.0 35 GCTCTGGCTG .................................... GGCGATCGCAAAGCCGATGTCCCGCTGCCAGGCCG 485199 36 100.0 36 TGCCAGGCCG .................................... GATCATCACGGCCGAACAGCGGGCCGATCCGAAATT 485271 36 100.0 36 ATCCGAAATT .................................... CCAGGCTGCCGACCGCGATCGGCAGAAAAAATTGAA 485343 36 100.0 35 AAAAATTGAA .................................... AACGGCGACGGGGTGACTCCCTCGGTTCCAATCAA 485414 36 100.0 36 TTCCAATCAA .................................... GTGAGACTATTGTCCCCGTACCCCACAGTGAGTGAT 485486 36 100.0 35 AGTGAGTGAT .................................... CCGACCGAGCCGACGGCAACCGTGGTGTTGTGGGA 485557 36 100.0 36 TGTTGTGGGA .................................... ACCACGGTGTAGCCCGCATCCCGGTAGGGGCGGCTC 485629 36 100.0 36 GGGGCGGCTC .................................... GGTAGGGATGGCCGTCTGGAGGGAGCGGCTCGAAAA 485701 36 100.0 37 GGCTCGAAAA .................................... ACGTCTTCACGGTCGCCCCTCCCGGCTTTGCCGAGCA 485774 36 100.0 35 TTGCCGAGCA .................................... AAACCGAAGCATCAAGCGAAGGCTGTTCCGGCCGC 485845 36 100.0 35 TTCCGGCCGC .................................... GACGTTGACTGCGGCGAAGTCCTCGACGTGATGGC 485916 36 100.0 36 ACGTGATGGC .................................... CACCACCGTCGCCTTTGACTTCAAATCAAAGAACTT 485988 36 100.0 36 CAAAGAACTT .................................... GCCGATCAGCGAGCTGACGGGTAATCCTTGCGGGTT 486060 36 100.0 36 CTTGCGGGTT .................................... CGACTCGGGCGAACAGTGCACTCAGTGTGGCGGTTT 486132 36 100.0 35 GTGGCGGTTT .................................... ATGGGCATCGACCTCAAGCGGTTCGTGGCCAATCC 486203 36 100.0 35 TGGCCAATCC .................................... CTGACCTGGTTGGTTCCGGAGCCGTCCGCCAAATA 486274 36 100.0 36 CCGCCAAATA .................................... AAGGAGTGTTCGACTCCGAGGAGAAAGCCACTGCCG 486346 36 100.0 37 GCCACTGCCG .................................... TCCAGCGCGACCATCGCGGCGTTGGTCGGAGGCCCTC 486419 36 100.0 36 GGAGGCCCTC .................................... ACCTCTTCGGTCTGTGGGATAACCCGATTGTCGCCA 486491 36 100.0 36 ATTGTCGCCA .................................... GCAACGTATCGTTCGCGGCCAGTTCGAAGTTCGTAC 486563 36 100.0 38 AAGTTCGTAC .................................... GAGCTTGAGAGTCGAACCGTCGACGCCAACGATCTCCT 486637 36 100.0 36 ACGATCTCCT .................................... GGCCAGGTCGGTCCCGAATCGTGAGCCGAAACGGCT 486709 36 100.0 37 CGAAACGGCT .................................... CGCGTCTCCTGGAGCAGAGACTGAATCGCCTCGAGAA 486782 36 100.0 35 GCCTCGAGAA .................................... GCGAGGGCGACGAGCGGAGTGAGGTCGACTGACGG 486853 36 100.0 36 CGACTGACGG .................................... TGGCTCCCTTGCCGATCGCGTCCTGCATCAGCTTGA 486925 36 100.0 38 ATCAGCTTGA .................................... AAAGAACACCTTTCTCCCTCTGGCCGAGAAAGCCCCGA 486999 36 100.0 34 AAAGCCCCGA .................................... GACTCGGCTTCATGCGATTTCCTCTAACCCTCTC 487069 36 100.0 35 TAACCCTCTC .................................... AATGCGTCGAGCTCGGCCCAAGCCTGGTCCCGCAC 487140 36 100.0 35 GGTCCCGCAC .................................... GAACTTACTCCCGAGCAGCATCGTCGCGCACTGGA 487211 36 100.0 37 GCGCACTGGA .................................... TCTGCGAGAGGCAGCGAGCCACGTACTCAGAGGAGCT 487284 36 100.0 37 CAGAGGAGCT .................................... ACAAACCGGTCCGCGATCCGATCACCGCACTCGAGCA 487357 36 100.0 35 CACTCGAGCA .................................... GCGGTCGATGCCGGCTCGATTGCCCTAGCCCTGGC 487428 36 100.0 36 TAGCCCTGGC .................................... TGCGAACACTTCGAGCCAGGAGAGGGTGGGTGGCGG 487500 36 100.0 36 TGGGTGGCGG .................................... TCTCAGTCTCTCGATTTCTATCGCGGCCCGCTTGGC 487572 36 100.0 35 CCCGCTTGGC .................................... AGGCCGGGGCCTCCTCGAGACCGAAAAGGCTTAAT 487643 36 100.0 AAGGCTTAAT .................................... CGCTCGCTTG ========== ====== ====== ====== ========== ==================================== 189 36 35 GTGCTCAACGCCTTGCGGCATCACAGAGGTCGGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [7,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.70,-7.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [43.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [186,256] Score: 0/0.18 # # Final direction: R [0.37,1.05 Confidence: MEDIUM] >NC_019897 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3272407 29 100.0 39 TTGAAAACAG ............................. TTCACACTTCGGCATGTCGCGCCCCTCGGACTTACGACG 3272475 29 100.0 39 ACTTACGACG ............................. GGCAACTTCGATGTGTGGCAGCGGGGGACGAGTTTTCCA 3272543 29 100.0 38 GAGTTTTCCA ............................. GGGTACGGGTTGATAAAGTGCCATATGATCGTTGGGTG 3272610 29 100.0 39 TCGTTGGGTG ............................. GACGATCCCGAAGGCGATAACGGCGTTGACGAGCGGAAG 3272678 29 100.0 37 CGAGCGGAAG ............................. AAGCGGCTCTACTGGCGGTGATGGGGAAATGACTGAG 3272744 29 100.0 37 AATGACTGAG ............................. CCTTTATGCGGGAGGCTTATGGTGGCGGGCAACGCAG 3272810 29 100.0 40 GGCAACGCAG ............................. GGGTGTAGTTCATATGGAACCCCGTTTCGCTAGGTACTGG 3272879 29 100.0 38 TAGGTACTGG ............................. CGCACCGGACATATGAACCGTGGCTGGCAGCTGACGAG 3272946 29 100.0 38 AGCTGACGAG ............................. GCCGACGGTTCCCGCAGGCGCGGGTTCTGCGGAAAGGG 3273013 29 100.0 39 GCGGAAAGGG ............................. GCGAAGTGGCCGAAAGCGCGGCTGAAATTGATCGAGGAG 3273081 29 100.0 37 GATCGAGGAG ............................. GGTCAACCTGGGCGACGACATTCCGGCCACGACAATG 3273147 29 100.0 36 CACGACAATG ............................. CATATCGCGCAGCTGCTGCTCGAGCTTTTCGAGCTG 3273212 29 100.0 38 TTTCGAGCTG ............................. TGGAAGGTAAAAAGGTTATTGTCTCTAACCTTGCATCG 3273279 29 100.0 39 CCTTGCATCG ............................. TTCGGCCTCAGTCGTGGCGAAGTTGTTCCCGAGTGCGAG 3273347 29 100.0 41 CGAGTGCGAG ............................. CATCGGAAACAGCCGATTTGTTGAAATCATTGACTAAATAG 3273417 29 100.0 41 GACTAAATAG ............................. AGTTGTAAAAGATCAGTACCCGATCACTCGTGGATTCGAGG 3273487 29 100.0 40 GGATTCGAGG ............................. GAGAGGAAGACGGAATACAATCATGGTTTTTCGAACCGTG 3273556 29 100.0 40 TCGAACCGTG ............................. CTTGTGCTCGTCACTCTGGTCGATCAGCAATTCGTCGAGG 3273625 29 100.0 38 TTCGTCGAGG ............................. TGAAAGAGGACTACATCGGTCCCGTTCGTGAACAACTG 3273692 29 100.0 TGAACAACTG ............................. TATAGTGCTCGGGTTCAAGGACGCCGGAATATACCGGG ========== ====== ====== ====== ========== ============================= 20 29 38 TTTCAATTCCTCATAGGTACGATCAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.52%AT] # Reference repeat match suggestion: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [139,299] Score: 0.18/0.18 # # Final direction: R [0,5.55 Confidence: HIGH] >NC_019897 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 3279198 30 100.0 36 GTCGACACCG .............................. GCAAACGGAACGCGTGCCGGCGCCGCCGTGGTTTGT 3279264 30 100.0 39 CGTGGTTTGT .............................. TGTTCACGGCAAATTACCCACACAGGTGATGTGGTGGCG 3279333 30 100.0 36 TGTGGTGGCG .............................. ACCCGTGCGCAGGCAGCGGTTCCACCTTGAGGGCGG 3279399 30 100.0 36 TTGAGGGCGG .............................. GGAGATTGAGCAGTATAAACAGTTTGAACAGCAGTA 3279465 30 100.0 38 AACAGCAGTA .............................. GTAACAGCCATCGTGCCGAAATACGAGCGCTGAAACAC 3279533 30 100.0 35 GCTGAAACAC .............................. TAGTAAGTGTTCTCCGTCGTCTGCCAGACTTTCAA 3279598 30 100.0 38 AGACTTTCAA .............................. GAGGCAGAGGTGTCGGTGCTCGGCTCAATCCTGTTGGA 3279666 30 100.0 35 TCCTGTTGGA .............................. ACGCGATTCTTCCAGCGCGACAGCACGAAGGCCAA 3279731 30 100.0 35 CGAAGGCCAA .............................. CTTCACAAAGTGGCCCATGGCATCACGAGGCCGGT 3279796 30 100.0 36 CGAGGCCGGT .............................. CCCGATCAACGAACCCGGAATCGACGAGAGAATCGA 3279862 30 100.0 36 AGAGAATCGA .............................. CGAACCTTCACAAACTTCATTTGCTCGGTCACCCGT 3279928 30 100.0 36 GGTCACCCGT .............................. TCCTGCACCTCTTGGCGGCCTGACGGACTGTTTACG 3279994 30 100.0 36 ACTGTTTACG .............................. CCCGCGGGCTCGCCGCAGCGTTCAGCTTGAGAGCGG 3280060 30 100.0 36 TTGAGAGCGG .............................. CCGCCCTTTACATCCCATTTCCCGGCGCGGAAATCA 3280126 30 100.0 GCGGAAATCA .............................. CGGGACGATCTATGTCATGTTCTCGGCGGTGGAAGT ========== ====== ====== ====== ========== ============================== 15 30 36 GTTTCAATTCCTCATAGGTACGATCAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [38.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [135,298] Score: 0.18/0.18 # # Final direction: R [0,5.82 Confidence: HIGH] >NC_019897 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 3275442 30 100.0 36 ACAGACGCAG .............................. TGTGAGACTGTCGGTCAGTCTGGCCATATGGGCTGG 3275508 30 100.0 35 TATGGGCTGG .............................. TAGACGGGCATTTCAAACTGTACCAAGTCGATCCC 3275573 30 100.0 35 AGTCGATCCC .............................. ACGGTCGGCGCGATCACTTCGGCATTCGCTGACGT 3275638 30 100.0 37 TCGCTGACGT .............................. GAAAGGCAGCATTCCCGCGAATGTCGGCTCGTCCGGA 3275705 30 100.0 37 CTCGTCCGGA .............................. TCCATTTGAATTGTTTCAAAGGACGCAACCAGCGCGG 3275772 30 100.0 39 ACCAGCGCGG .............................. CCGCCGTATAGCAGCTCGTCGACGTTTGTTGTCTGGTGA 3275841 30 100.0 36 TGTCTGGTGA .............................. TCCTGAGTTCACCGGGATCGTAGATTTGATCATCGA 3275907 30 100.0 35 TGATCATCGA .............................. GAAGGTTTGCGACGATTGCGCGGAAGGAGGGAAAG 3275972 30 100.0 38 GGAGGGAAAG .............................. TTTGCATTGGCGCATCCCTCCTTGATATAGCGTTTCAT 3276040 30 100.0 37 AGCGTTTCAT .............................. GGAGTTCAAATCGGAAAAATCGGCATCGGTATCGGGA 3276107 30 100.0 35 GGTATCGGGA .............................. GTAGCTTCCAGCGAATTTTGCTTTTCTTGATTTGA 3276172 30 100.0 38 CTTGATTTGA .............................. AAAGAAATGGGCTGATGACCCTGAGCCCGTAACTATGT 3276240 30 100.0 36 GTAACTATGT .............................. CTGCCCGCATCGAGGGCAGATGCCAAATGCTTCCCA 3276306 30 100.0 36 ATGCTTCCCA .............................. CTATAGAATCTCACGGCCCAGAAGGACGAAACTACA 3276372 30 100.0 37 CGAAACTACA .............................. GGTTCTCAAGGAAGATTACCTGGGGCCGGTAAGGGAA 3276439 30 100.0 38 GGTAAGGGAA .............................. TCGAACCGGTCGCTGGCCGATGCCATCAAGACAGAAAA 3276507 30 100.0 36 AGACAGAAAA .............................. TCCGCGAGAAGACGGAACGTTGGTACGCCCGGCTCG 3276573 30 100.0 37 GCCCGGCTCG .............................. TCCTCAATGCCGAACTCGTCCGCCTCTTCGTACCAGA 3276640 30 100.0 36 TCGTACCAGA .............................. CGAACCGGACGGCGGAACTTTCCCGACGATAGTCGT 3276706 30 100.0 35 CGATAGTCGT .............................. GAGGTGATGAAGCATGTACAAACACTATATCCGAA 3276771 30 100.0 35 TATATCCGAA .............................. AATGGTCACAGCGTCCCCCCGCGCCTCCGTCGCTC 3276836 30 100.0 39 TCCGTCGCTC .............................. TCTGGCCGCCGGAATCGCGGTTTATTTCCATCAGTTAAT 3276905 30 100.0 38 ATCAGTTAAT .............................. TCGAAATCGAGTTCCCGCCCTCGATGGGGGCGAAATGG 3276973 30 100.0 39 GGCGAAATGG .............................. GTTGTCCCGATGGCCGATGAGACGATGAAGGACGTCGAG 3277042 30 100.0 39 GGACGTCGAG .............................. ACAGTCGGAAGTGGATGAGCTTCAATACGAGAGCCAACG 3277111 30 100.0 35 AGAGCCAACG .............................. CGAGCAGAGCGCGGCGGCCGAGAAGACATTCCAGC 3277176 30 100.0 37 ACATTCCAGC .............................. CCGACCCGGCGTATTCGTCCAAGCTGGTCGGGATCAT 3277243 30 100.0 36 TCGGGATCAT .............................. GCATATTTTTGGATTCGTGTAGAATAATACATTTAC 3277309 30 100.0 38 ATACATTTAC .............................. TGTTCCAGCCGACATTGCCAACTGCGGGACAATAACCC 3277377 30 100.0 38 ACAATAACCC .............................. GCGCTCGCTGAGCACCGGGCCGCTCAGTCGATGTTCGA 3277445 30 100.0 37 CGATGTTCGA .............................. TTTATAATGAGTCCGAAAGTCCAGAAGAAGCTGATTT 3277512 30 100.0 AAGCTGATTT .............................. ACTCCTGCAGCGCCTCGAGGCGCGCCAGCCGACTTT ========== ====== ====== ====== ========== ============================== 32 30 36 GTTTCAATTCCTCATAGGTACGATCAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [43.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [199,298] Score: 0/0.18 # # Final direction: R [0.27,5.37 Confidence: HIGH] >NC_019897 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 3281811 30 100.0 39 TCCTGAATTA .............................. CATGTCGAGCTCCACCATGGAGAGCCCGATCCGCCGCGC 3281880 30 100.0 36 TCCGCCGCGC .............................. ACGGCGGCTTCGGTGCCGGATTCTGCGGCGTATCCT 3281946 30 100.0 35 GGCGTATCCT .............................. ACGACGAACATCAGGTGATGAGCGTCGTCGGCATT 3282011 30 100.0 36 CGTCGGCATT .............................. GAAGCATTTCGCCCTGATGGGGCAGATTCAGGGCGA 3282077 30 100.0 37 TTCAGGGCGA .............................. GCTCGCCTCCCATCCGACGATCTGGACGCCGATGATG 3282144 30 100.0 36 GCCGATGATG .............................. AGTCGAATGGGATCAGGAATCCGCAATGTGGGTATT 3282210 30 100.0 35 TGTGGGTATT .............................. TCCTTCGTTCTTTCTGATTTCATTATACAGCATTA 3282275 30 100.0 36 TACAGCATTA .............................. TCAAGCAGGTCGAGAAACTCCTGAAACTCGACCCAT 3282341 30 100.0 35 CTCGACCCAT .............................. CCACGCGGTCACCGTCGTACTCGTCGCCCGTGCGA 3282406 30 100.0 36 GCCCGTGCGA .............................. GGTATATTCCTTCACGGCCAGCGTGATCTCGGCGGC 3282472 30 100.0 40 TCTCGGCGGC .............................. TCGATGCTGATGTCTTCGCGGATCACCATCGTGTACTGGT 3282542 30 100.0 40 GTGTACTGGT .............................. AGTCCACGACGAACATCAGGTGATGAGCGTCGTCGGCATT 3282612 30 100.0 38 CGTCGGCATT .............................. GTTATTTACGGCGCCAGCGATAGAGGCTTCCTTTCCTG 3282680 30 100.0 36 TCCTTTCCTG .............................. TTTTGCCGGGGCCGTTGTTTCCTGCGTGCCATGCTA 3282746 30 100.0 39 TGCCATGCTA .............................. ATTGTTCATTCAGCACTTTATTTACAGCTTTCTTGAGTG 3282815 30 100.0 36 TTCTTGAGTG .............................. GGTATGAATGACGACATCTGGACGACATTCGGACGA 3282881 30 100.0 37 ATTCGGACGA .............................. GACCTGATCGCGCCGAGCTTTTACGAGGTGCATCACG 3282948 30 100.0 GTGCATCACG .............................. CTGTATCGTATATTCAGTTCCTGATCCTGCGAAGCATT ========== ====== ====== ====== ========== ============================== 18 30 36 GTTTCAATTCCTCATAGGTACGATCAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [134,300] Score: 0.18/0.18 # # Final direction: R [0,5.55 Confidence: HIGH] >NC_019892 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 5278275 37 89.2 35 CCTTTTCCGC -..C...............T....A............ TTTGGAGTTGAGCCGACCGACCGGGGCGAGAATGC 5278347 37 97.3 38 GCGAGAATGC ....................................T GTTCACGGCTTGGGCTCCTGGCCAGCGTACGTGATCGT 5278422 37 94.6 36 ACGTGATCGT ...................T.........A....... GGTGGGCATCGACACCAACGATCCCGACTTGCACAA 5278495 37 94.6 35 ACTTGCACAA ............T......T................. GACGTCACCGCTGCTGCGGGCAAGAAACTCTACTG 5278567 37 100.0 36 AACTCTACTG ..................................... AGAGTAATGCATGGCCTGTAAAGTTGGCATGTCGAC 5278640 37 100.0 37 GCATGTCGAC ..................................... TGACCGAGAATCTGCGGATCTCCGGAAATATCCTCAC 5278714 37 100.0 35 ATATCCTCAC ..................................... GTCTGCACAGGCATCCGAAAAGCTCAGCAACAAAG 5278786 37 100.0 36 AGCAACAAAG ..................................... GCTCAACGTTGCGTCCTGGCCGAGTCGGAATAGAGT 5278859 37 100.0 36 GGAATAGAGT ..................................... CAGCCTCGCGGAGGAGCCGGAAGAGGCCGCTCAATT 5278932 37 100.0 34 CCGCTCAATT ..................................... AGGACCCGAAATGGACCCTCGATCCGGCAAACAA 5279003 37 100.0 38 CGGCAAACAA ..................................... GTCACACCTCGGTGGACGGAGTAATCCCCGGCTGGGTT 5279078 37 97.3 36 CGGCTGGGTT ............T........................ CTTTTATGCTCGCGTGGCCTGGTTGGTTGTCGTCAC 5279151 37 100.0 36 TTGTCGTCAC ..................................... GCTCCTGCCGTGACATCCCTGAAAAAGGCTACGCAA 5279224 37 100.0 36 GGCTACGCAA ..................................... TCACTTGGACGATTTCAAAAAGGCCCTCGGGATAGC 5279297 37 100.0 36 TCGGGATAGC ..................................... AAGCTCCGACGCAATCCACTGTCCGCTGGTGTGGAG 5279370 37 100.0 34 TGGTGTGGAG ..................................... GCCGTTTCGGCTCCAAACAACGGTTTCGTATACC 5279441 37 100.0 39 TTCGTATACC ..................................... ACGGCGTCACAAACGCGGCAACAACCACATTTTGCACAG 5279517 37 100.0 38 TTTTGCACAG ..................................... CACGCCATCCCTTTGCGGGTCAGAGTGTCAGTGGAGCG 5279592 37 100.0 35 CAGTGGAGCG ..................................... CGAGACCTGGCCGTCCAGATCGACCGGCGTGACTT 5279664 37 100.0 35 GGCGTGACTT ..................................... AACAATTCGCCGGACCACAACCCGGGGATCCTCGA 5279736 37 100.0 36 GGATCCTCGA ..................................... TCGCGTCGGGCGCGGCTGTATATACCGCATGGAACG 5279809 37 100.0 34 GCATGGAACG ..................................... AAGCTCAAGCCGGCTACCTCAACGGACGCACAAT 5279880 37 100.0 35 GACGCACAAT ..................................... CCGATCTGGAGAAGAGAGTTCTAAAAGGCTTCGAC 5279952 37 100.0 39 AGGCTTCGAC ..................................... CGGAAAGGTGCAGCAGAACGCCGAGGCTTACATCGCCGA 5280028 37 100.0 34 ACATCGCCGA ..................................... ACTGGCCGAGGATCCGGCCCACAATATTCGAAAT 5280099 37 100.0 37 TATTCGAAAT ..................................... GAGGCTGGGAAAAATCTGGAGGACAGCAGCAGCCGGC 5280173 37 100.0 37 AGCAGCCGGC ..................................... CGCCGCTGGAAGAGTCCTCGACCCCATCGAGTCCCCC 5280247 37 100.0 36 CGAGTCCCCC ..................................... ATCAGGTTGAGAGTTGCCGTCTTCTTGGCGTAATCA 5280320 37 100.0 37 GGCGTAATCA ..................................... GGGAAAGTTCTACGGTGTGAACATCGAGATCGAAGTC 5280394 37 100.0 37 GATCGAAGTC ..................................... CCTGCTCCTCTCACTGAAGGCGGATGCGATGCACATT 5280468 37 100.0 36 GATGCACATT ..................................... GACCGCGTATTGCCACTCGTCGTAGCAGAGCGATGT 5280541 37 100.0 38 AGAGCGATGT ..................................... TTCCAGGGTCCATGTCGAAACCTGCTCAAACCAGGAAA 5280616 37 100.0 36 AACCAGGAAA ..................................... GATGCGGCCAGGCAGCGACGTTGGCCGAGTTGTGGC 5280689 37 100.0 35 GAGTTGTGGC ..................................... GGCCTGGCTGACAAGACCTGGCTCGAGAAGAACTA 5280761 37 100.0 38 AGAAGAACTA ..................................... GAGTTGGTCGGCAAGCCGTTGGCCGCGCGTGAAGACGC 5280836 37 100.0 37 GTGAAGACGC ..................................... AGGAGAAGAGGAACTGACTCAGGCCGGCGTACGTGTG 5280910 37 100.0 37 CGTACGTGTG ..................................... GTCGCTCCAGGGTGACCGCTACTTGGTTCAGGGCTGC 5280984 37 100.0 35 TCAGGGCTGC ..................................... TTCTCGGCATCACCCAGCTTGGCATGCCAAGCGCC 5281056 37 100.0 36 GCCAAGCGCC ..................................... CGGGGACTCGATCCCCGAGCTGACCAAGCGGGTGCA 5281129 37 100.0 35 AGCGGGTGCA ..................................... ACAGACACCTCCGGGACAGGTTTGCGGGGCTTGTG 5281201 37 100.0 36 GGGGCTTGTG ..................................... GCCGGAGTCGAGGTTGGCACGGATCGGGATGGTCAA 5281274 37 100.0 35 GGATGGTCAA ..................................... GGCGATTATCCTGTTAACAAGATCTGGAGATTTAC 5281346 37 100.0 35 GGAGATTTAC ..................................... CAAGACGACGGCTATAACGTCGTTATAGGGTTAAC 5281418 37 100.0 36 TAGGGTTAAC ..................................... TGTCGTCAGGCTGTACTACTGTCACGGCCTGACCAT 5281491 37 100.0 38 GCCTGACCAT ..................................... GTCAGCGAGCGACCAGTGCTTCGCGTGACAGGCCGATC 5281566 37 100.0 37 CAGGCCGATC ..................................... GATTCGGAGCAGCGTGCGGTTGCAGCCTGCCGTAATG 5281640 37 100.0 35 TGCCGTAATG ..................................... CGACCAGGCCGATGCCAACCCGGAGCTCAACTGAT 5281712 37 100.0 36 CTCAACTGAT ..................................... TTTCGTCCTCGATCTCGGCGAACTCGTGCGTTCTCA 5281785 37 100.0 36 TGCGTTCTCA ..................................... GGCGATATCGCCCTTCGCACGCTGGTCGAAGTCGAC 5281858 37 100.0 37 CGAAGTCGAC ..................................... GGCGATCCCGAGCCGCAAGGGACCGGTCCAGGCCTGG 5281932 37 100.0 38 CCAGGCCTGG ..................................... GGGATTGCAAGTAGCTATCACCTGGTCCCGAGGATCTT 5282007 37 100.0 CGAGGATCTT ..................................... GGCCGGCGAT ========== ====== ====== ====== ========== ===================================== 52 37 36 GCTTCAATGGGGCCACGGCCCGGAGGCCGTGGAAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [7,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-16.80,-18.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [35.0-33.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [155,578] Score: 0.18/0.18 # # Final direction: R [0.37,0.96 Confidence: MEDIUM] >NC_019892 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 5291569 36 100.0 38 TGGATCTACG .................................... GTCCGCAAAGGAGGCTCTTGTAATGGCTCGAATATTGG 5291643 36 100.0 37 CGAATATTGG .................................... CTCGGGGCTGACGCGATTGCGATCAGCGAGGCGACAG 5291716 36 100.0 37 GAGGCGACAG .................................... CTGCTTCGATCCTGGGCACTTACCCTGCGGCCCTCCG 5291789 36 100.0 37 CGGCCCTCCG .................................... CCAACAGCGCCGTCGACCCGAACCGACTTCACCGGCG 5291862 36 97.2 37 TTCACCGGCG ...................................T ATCATTATGTAGTTGTAATAACGCAATAAGATAAGAG 5291935 36 100.0 38 AAGATAAGAG .................................... TTGTCGAAATCAGGTCGACATGGCGAATCCGGGTGTAG 5292009 36 100.0 38 CCGGGTGTAG .................................... ATTCGCTGATGGCTCAACAGCCTATACGGTGAATGGCG 5292083 36 100.0 37 GTGAATGGCG .................................... ATGGTGTCCTGGGTTCACTCGATCAAGGAGGGCCTCG 5292156 36 100.0 36 GAGGGCCTCG .................................... GGCCGGCACGGCCGCAGTGTCAACAAGCAAGCTGGG 5292228 36 100.0 38 GCAAGCTGGG .................................... CCCAGTGCCCTCGGGGATCTTCTCATTGACCCCAAGTT 5292302 36 100.0 38 ACCCCAAGTT .................................... TCAGTTTAAACAAGACCTCATCACCTGTGATGATGAGT 5292376 36 100.0 37 GATGATGAGT .................................... GCAATGGATCCCAATCCCCGGCCGATCGTCGAGCCGT 5292449 36 100.0 37 GTCGAGCCGT .................................... CGTGCCACGGGGCCAAACGAAGAGGGCAGAAGAGATT 5292522 36 100.0 37 AGAAGAGATT .................................... GTCGAACTCGCCGCGCAGCGCCGAGGAGATCGCCGTT 5292595 36 100.0 35 GATCGCCGTT .................................... GGTGTCGCCCCGAAACATCGGGGAAGCTGTTGCGG 5292666 36 100.0 36 GCTGTTGCGG .................................... TTCGAGAAGACGATCGAATGCTACGTCAACGGCGAG 5292738 36 100.0 37 CAACGGCGAG .................................... GATCGACCTGGATTTCACTGCTTCGGCATTGATCGTG 5292811 36 100.0 36 ATTGATCGTG .................................... TTTATCGTCCAGGAAGCGTTCTCGGCAATGGAGTGG 5292883 36 100.0 36 AATGGAGTGG .................................... GGATCGAGACCAGGGCACCACGCGACTTCGGACCAG 5292955 36 100.0 38 TTCGGACCAG .................................... AGCGGCTTGCGGAATTCGCACACTCTCGCAATCACCGG 5293029 36 100.0 38 CAATCACCGG .................................... GCGCCCAGGGGCACGGTGACCGGACCAGGCCAAGCTTG 5293103 36 100.0 37 GCCAAGCTTG .................................... GCCCGACGTGCGTGAGTTCGCTCACGCCTGAGATCCG 5293176 36 100.0 38 CTGAGATCCG .................................... GTCCTACAGTGGCGCGATTACCGTCACTGACTTCCCCG 5293250 36 100.0 40 GACTTCCCCG .................................... TTCACTTGGGAGAGAGAGGACGGGGCCGAAATCTCGATCG 5293326 36 100.0 36 ATCTCGATCG .................................... AGTATCCAGCCTCGCGTTAGAGCGACGGCAGAGAAG 5293398 36 100.0 38 GGCAGAGAAG .................................... CAAGGGCTCAAATCAGGCTAAATTTGACTGCCTGCGGG 5293472 36 100.0 37 TGCCTGCGGG .................................... CCTGCTCTCCGCGATCGCTGGCGCCACCAGCGAGGAG 5293545 36 100.0 37 CAGCGAGGAG .................................... GATAACAAGTGCGGGCCGAGTGACTTTCCGAGTGACG 5293618 36 100.0 37 CCGAGTGACG .................................... CCGCGAGCTGGCTCGAACGCGGGCGGCCATGGAAGCG 5293691 36 100.0 36 CATGGAAGCG .................................... CTGCCGTCCGTGGTCGTCGACGCCGGCCAGTTCGGG 5293763 36 100.0 37 CCAGTTCGGG .................................... GGGACGATCGAGGCAGTCGCGAAGCGGCTGTGATCGG 5293836 36 100.0 37 CTGTGATCGG .................................... TGGGGGATGGATGTTAACAATCAAGTAATCATGGGAG 5293909 36 100.0 38 ATCATGGGAG .................................... GAGAAACCCCCAAGGATTCTTAGAATGTTAAAATGTAG 5293983 36 100.0 37 TAAAATGTAG .................................... GGAAAAACCCTAGGCGAACAGGTAGCTGCAGCGCTCG 5294056 36 100.0 39 GCAGCGCTCG .................................... TTGATCCGTCCAAGGCCAAGCAGATGCAGAGCTATGCCG 5294131 36 100.0 37 AGCTATGCCG .................................... AAGGACTAGCCCGGTCTTACATCGACAAGGGGCAAGG 5294204 36 100.0 38 AGGGGCAAGG .................................... GATCCGAGATGGAATTCGGTGACTGCGGCTGCGGAATG 5294278 36 100.0 36 CTGCGGAATG .................................... ATTGCGATTAGAGCCGCGCTTGACGGCCGCGAACTG 5294350 36 100.0 37 CCGCGAACTG .................................... AACCTTCCGGTCGTTGAGAATTTCGGAGTACAACTTG 5294423 36 100.0 39 GTACAACTTG .................................... GTTGCCGACACCTCCGAGGGCTTTAAGAAACTCCTCGAG 5294498 36 100.0 37 ACTCCTCGAG .................................... CTGGATGCCGACGCCGGGCGAACGGCACACCGACTAG 5294571 36 100.0 37 CACCGACTAG .................................... GACCCCGAGATCGGTCGGTACTACGCGGTCAGCTATG 5294644 36 100.0 38 GTCAGCTATG .................................... CGCCGATCGTGCTGGAGTGTTTGCGCGAACAGGAAGTG 5294718 36 100.0 37 ACAGGAAGTG .................................... ACAGCCCCAATCCAAATCGCGGTCCCCAAGGGATCAG 5294791 36 100.0 36 AAGGGATCAG .................................... GGCGGGAGTGACGTCGCTGTGTGGGTCGAGGACGAG 5294863 36 100.0 40 CGAGGACGAG .................................... TTGGCCGGTCGAAACTCGACGCCCACAGACTCTCTACCGG 5294939 36 100.0 37 TCTCTACCGG .................................... GTGAATCGCACACTCGTCCCGACGGCCCAGATCGTGG 5295012 36 100.0 40 CAGATCGTGG .................................... CTCGAGGCGGCCCGCGTGCCGATCTCCGCTGTCCGGATGG 5295088 36 100.0 38 GTCCGGATGG .................................... TCAACTAATTTGACTACAAATTTATGGGGAATTCGCAG 5295162 36 100.0 37 GAATTCGCAG .................................... GGGGCTGATTCGTCGGGTACGAAGTAGGGGACCGACG 5295235 36 100.0 38 GGGACCGACG .................................... CCGATTACCGGTCAAAAGACCAGGCAGGGCACCGGAAG 5295309 36 100.0 38 GCACCGGAAG .................................... ATCGGACCCGGTATACACGTTGACCATGTGCGGTGGGG 5295383 36 100.0 37 TGCGGTGGGG .................................... CGGAACAACCCGGCCCACGGCCAGAACGGCAAGCCCG 5295456 36 100.0 39 GGCAAGCCCG .................................... GTGTGACCACGGAACGGAGTCGTTCGGGACGGGCGAGAG 5295531 36 100.0 38 CGGGCGAGAG .................................... CGCCGATCGTGCTGGAGTGTTTGCGCGAACAGGAAGTG 5295605 36 100.0 37 ACAGGAAGTG .................................... ACAGCCCCAATCCAAATCGCGGTCCCCAAGGGATCAG 5295678 36 100.0 39 AAGGGATCAG .................................... TTGATGAGCCGTCGTAAGACATGATCGCCCGATTTAGTG 5295753 36 100.0 38 CGATTTAGTG .................................... TACTCTTGCTGAAATCGCCCGGCTTGGGCAGGTCTCTG 5295827 36 100.0 38 CAGGTCTCTG .................................... GTCGCGGCCGGGATGCACGTCGCCGCCGGGATGCCGAG 5295901 36 100.0 41 GGATGCCGAG .................................... GCGAAGGCGTCATGAGCAACGGACTGGCGACACGAGAGACG 5295978 36 100.0 37 ACGAGAGACG .................................... CCCGCAGTACTTGCGGCAAGGGCGAGGTCGGCCTTTG 5296051 36 100.0 38 TCGGCCTTTG .................................... ACCCCCGAGGCCGTGGTCGGGGTGTTCGACACTGAGGG 5296125 36 100.0 37 ACACTGAGGG .................................... GGACTGGGACGAAGGTGACGACACTTGCACGAGCAAG 5296198 36 100.0 38 CACGAGCAAG .................................... TCGCCTTGCCGGCCGCTCCTGATCCTGCGCCTCCCGAG 5296272 36 100.0 36 GCCTCCCGAG .................................... GTGTTGGTTCCCGAAGGGGTTCCGGCGTCCCCTTCG 5296344 36 100.0 40 GTCCCCTTCG .................................... CCGGGTGGGCCCGGAAGGGAACAAGAGAACAGCAACCCCG 5296420 36 100.0 38 AGCAACCCCG .................................... TTCACCGGATGAGGTCGCTCGGAATCGGCGGCCACATG 5296494 36 100.0 38 CGGCCACATG .................................... GCCTCGGCGAGCAGTTCCTGCCGGGCAGCACCTTCGGG 5296568 36 100.0 42 CACCTTCGGG .................................... GCCAGGTCGCGGAGGGGCGCATTGTGGTGACGACCGATGGCG 5296646 36 100.0 37 ACCGATGGCG .................................... GCCAACGGCTATGTGGCCGGTTCGACATACCAGGTTG 5296719 36 100.0 37 TACCAGGTTG .................................... CGGGACAGTAGTGGCAGGACCGGCTTTCCCCAGGGTG 5296792 36 100.0 37 CCCCAGGGTG .................................... GAGCGGGCGAATCTATTTCCCTAACAAGGTAGCGAAG 5296865 36 100.0 36 GGTAGCGAAG .................................... GGGACGCCACCTGGGACGCCACCGAGGCCGCAAAGG 5296937 36 100.0 36 GCCGCAAAGG .................................... GCGGCGTTCTCGATGGTTTGCAGCCCAGACGCCACG 5297009 36 100.0 AGACGCCACG .................................... GGCCGGCGAT ========== ====== ====== ====== ========== ==================================== 75 36 37 CTTCAATGGGGCCACGGCTCGGAAGCCGTGGAAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-14.80,-14.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [36.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [686,983] Score: 0/0.18 # # Final direction: F [1.01,0.41 Confidence: MEDIUM] >NC_019892 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 5320758 37 100.0 37 CTTCACTCAG ..................................... GTATCGAGCGAGCGCGTAAATTGCCGGCCTTGCCAGC 5320832 37 100.0 36 CCTTGCCAGC ..................................... CCTGCGAGGGGTCCTCTTGCAGCGATTCAGCGACCG 5320905 37 100.0 36 TCAGCGACCG ..................................... CGAAGCTCAGCAAACATTGGCCAAGGAATTCGGGCT 5320978 37 100.0 35 AATTCGGGCT ..................................... ACGAAATCAAGTCCCTGGTCGAGCAGGGGTTAAAA 5321050 37 100.0 37 GGGGTTAAAA ..................................... GAGGTCGGGCAGGCCAAATTACGTCGCTGGTGTTGTG 5321124 37 100.0 36 TGGTGTTGTG ..................................... ACGTTCACGCCCGGGGCGGTCGCGACGCACGGAAAC 5321197 37 100.0 37 GCACGGAAAC ..................................... TGGATGAAGCCGAGGCGGATATCGCATCGATTACCGA 5321271 37 100.0 35 CGATTACCGA ..................................... CCAACATGATCGCCCTGGTCGACCATCAAATCGCA 5321343 37 100.0 37 TCAAATCGCA ..................................... GCGTCGCTGGACTGGAAATTCTCCTCGGCAAGAGCGC 5321417 37 100.0 35 GCAAGAGCGC ..................................... GAGATATTTTCGCCCTCATCGAAGAATCGGGCGGC 5321489 37 100.0 38 ATCGGGCGGC ..................................... AACCACGGGTGCGGGAATTCCGCTCGTTCCGTAGACGG 5321564 37 100.0 38 CCGTAGACGG ..................................... TATGGTCCATTGCGGAACATAATCACTTATTCCCTCAA 5321639 37 100.0 36 ATTCCCTCAA ..................................... GAATAGCTTCACAGCGGTGGAATCGGCGCGAGGCGA 5321712 37 100.0 35 CGCGAGGCGA ..................................... CAAGGCGGGTGGACACGCCAAAGCCGCGAAGACTG 5321784 37 100.0 37 GCGAAGACTG ..................................... CGGGTGGGAGTCCGCGGCTTTGCCCATCCTCGGTGTC 5321858 37 100.0 37 CCTCGGTGTC ..................................... AAGAGCTCGGAGTGTTGGGTAGCCATGATCGTTGGTC 5321932 37 100.0 36 ATCGTTGGTC ..................................... CTGGGCCTGCTCGTGGACGACAGTGCGCGGTGGGTC 5322005 37 100.0 35 GCGGTGGGTC ..................................... TTCTGGATGTGAACACAAATACAATAATAGGGGAC 5322077 37 100.0 37 AATAGGGGAC ..................................... TTGCGGCGATACTGTTCAATAAGACAGCAAAGGCCGC 5322151 37 100.0 35 CAAAGGCCGC ..................................... TTGAAACGCAGGCTGATGCCGGCCGCACAACACAT 5322223 37 100.0 34 CACAACACAT ..................................... CCGAGGCAAGCGTCCAATTCCGCTCGCCTCTCAT 5322294 37 100.0 35 CGCCTCTCAT ..................................... ATGTCGCCGCCAGCAAGCCGCAGCCGCTCATTCTC 5322366 37 100.0 GCTCATTCTC ..................................... GGCCGGCGAT ========== ====== ====== ====== ========== ===================================== 23 37 36 GCTTCAATGGGGCCACGGCTCGGAAGCCGTGGAAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-14.80,-14.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [38.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2828,1223] Score: 0.18/0.18 # # Final direction: F [1.19,0 Confidence: HIGH] >NC_019897 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 3270769 30 86.7 40 AATCCGCAAA -......AG.....A............... TTGGACAAGCTAAAGCTAGGGGCTTTACGGCGACATCCTA 3270839 30 96.7 38 CGACATCCTA ..........................A... CGGCATTCTGGTGAATTTTCGCGCACACTTTGTTTATT 3270907 30 100.0 39 TTTGTTTATT .............................. TTCAGATGCTCTTCGAAGCCAGCGAGCACGTCGGGTATG 3270976 30 100.0 39 GTCGGGTATG .............................. CGATACGGGCGATGTCATAGTGATACTTCGCCCAGATGA 3271045 30 96.7 GCCCAGATGA .A............................ ATGGGCCTCT ========== ====== ====== ====== ========== ============================== 5 30 39 GTTTCAATTCCTTATAGGTACTATCAGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [418,43] Score: 0.18/0.18 # # Final direction: R [0.18,5.28 Confidence: HIGH] >NC_019892 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 5318137 37 100.0 36 GCTGCCTCAT ..................................... GGCCTTAGAAGTTGCCGCCAACGCTGAACGATACCA 5318210 37 100.0 35 AACGATACCA ..................................... GTCGCTGCACAAAATCGCATGCAACACCAGCAGGC 5318282 37 100.0 36 ACCAGCAGGC ..................................... GCGAGACGCCACAAAAACATTTGCACGCGAGTTTAT 5318355 37 100.0 35 GCGAGTTTAT ..................................... CAGGCCGCTAAGGACCGCAAGAAGCAGCTGAGAAC 5318427 37 100.0 36 AGCTGAGAAC ..................................... GCTCCAACGGTCGATCGACGCGTTCCGCAAGGAAAT 5318500 37 100.0 37 GCAAGGAAAT ..................................... AAAGCTTAAGCGATTAGTTAAACGCATCATGCCCGGC 5318574 37 100.0 36 CATGCCCGGC ..................................... GTCCACACCGTGGACGCTCACACGAAGCATTACATC 5318647 37 100.0 36 GCATTACATC ..................................... GAGGGGTTCGCGGCATGGCGAGACAAGGCGGCCGAA 5318720 37 100.0 37 GGCGGCCGAA ..................................... GGAGCATTGGACGGCCGAGGTTACACCTGCCGGGGTC 5318794 37 100.0 35 TGCCGGGGTC ..................................... ACCAGTCTGAGAATCCCGATTTCTGATCCTTACGC 5318866 37 100.0 36 ATCCTTACGC ..................................... ATGATGATGGGCGGAAAGTATCCACCGACCCAAGAA 5318939 37 100.0 36 GACCCAAGAA ..................................... CAAGTAGCAGGTCGATCGCGCGTCGCCGGCCAGATG 5319012 37 100.0 35 CGGCCAGATG ..................................... ACGGGTTCGCAAAAGACTGGGAAATTAGTCGGGAA 5319084 37 100.0 36 TAGTCGGGAA ..................................... GTCTGGGCCTTGGGTTAACTGGCGTGGCGAGATGGA 5319157 37 100.0 36 GCGAGATGGA ..................................... GGTATGGGTCGGCGGGATATGGCTCTCGATGGCGGT 5319230 37 100.0 37 CGATGGCGGT ..................................... GAGTCGTCCAAGTGGTTGGGCATCGACCCCATGTTGC 5319304 37 100.0 36 CCCATGTTGC ..................................... ACAGCAGATCGCGGATAACGAGTCGGCCCGCGCCGC 5319377 37 100.0 38 CCCGCGCCGC ..................................... GATGACACGCTGGCACTTCGGGCCGCGATCGCAACCGG 5319452 37 100.0 37 TCGCAACCGG ..................................... GAAATTGGCTTGGACGGTCAGGGTGTTGCCGTTGATT 5319526 37 100.0 38 GCCGTTGATT ..................................... TGGCCAGGCGTGAGATTATCCTGCACGCTCGCGCTATC 5319601 37 100.0 37 TCGCGCTATC ..................................... GCACGTTGCCGGTGATGATGAGGCCGGAGTAAGCGCC 5319675 37 100.0 35 AGTAAGCGCC ..................................... GCCTTCGGCTCGAAACCGGCCTCGAGCACGAACGA 5319747 37 100.0 38 GCACGAACGA ..................................... CTGATTCACTAGCTAGATTTAAGCCAGATTTCGGAGAC 5319822 37 100.0 36 TTTCGGAGAC ..................................... GCGAGATTCGGACGGGTAAGATTATCGAGTTGACGC 5319895 37 100.0 37 GAGTTGACGC ..................................... TTGAGGCCGGTAGTGGCCGCAGAATCCAACTCCCGTA 5319969 37 100.0 35 AACTCCCGTA ..................................... TCCTTCCGGCTGAACGTCAGAGTGTCTCCACCCGT 5320041 37 100.0 35 CTCCACCCGT ..................................... TGCCTTGACTTGGGCCTTCACGGAAGACTGGATGA 5320113 37 100.0 36 GACTGGATGA ..................................... CGGATTATTGATGCCTGGATGGGGCACCAGACGGAA 5320186 37 100.0 38 CCAGACGGAA ..................................... TCGCCCGGGAGTGGTCGCGCAAGCGGCCACATCTGCGT 5320261 37 100.0 36 ACATCTGCGT ..................................... CAGAGCGTTGAAGGCGTGCCTCTCGAAATGACGAGA 5320334 37 100.0 35 AATGACGAGA ..................................... CGCCGACGGCAGCCGAGCCGATCACGGAAGCCGAG 5320406 37 100.0 36 GGAAGCCGAG ..................................... GATCCTGAACGCGAAGCGCGGGCTCCCCTGGTCGGT 5320479 37 100.0 CCTGGTCGGT ..................................... GACCTGGTGA ========== ====== ====== ====== ========== ===================================== 33 37 36 GCTTCAATGGGGCCACGGCTCGGAAGCCGTGGAAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-14.80,-14.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [41.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [207,3110] Score: 0.18/0.18 # # Final direction: F [1.01,0.18 Confidence: HIGH] >NC_019897 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 3284636 30 100.0 38 TCCACGCTTC .............................. GTGATACTGTCCGAATACTTCGTGACCGTCATATCCGT 3284704 30 100.0 38 TCATATCCGT .............................. TTTCCGTCGGAACAAAACCGACCGGGTTGCCTTCGCCA 3284772 30 100.0 38 GCCTTCGCCA .............................. GATGTAGTACTGCGTGTACGGCCGATCTTCGGTTGGTA 3284840 30 100.0 36 TCGGTTGGTA .............................. CTCCACGTCCGTGATAAAGGTCGCGTCTCCGCACAT 3284906 30 100.0 36 CTCCGCACAT .............................. GTGAGCCATCAGAAATATCTCTCGTTCCCTATCCGT 3284972 30 100.0 CCCTATCCGT .............................. CCCAAAAATC ========== ====== ====== ====== ========== ============================== 6 30 37 GTTTCAATTCCTCATAGGTACGATCAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [804,169] Score: 0.18/0.18 # # Final direction: R [0.18,5.64 Confidence: HIGH] >NC_019897 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 3300714 31 100.0 34 AGATCGCTAC ............................... ATGCCCTGAAGTTCCCAGACGGCCTGATACGCCA 3300779 31 100.0 39 TGATACGCCA ............................... TGCTTGTTCGAATGTCTCGCGCGCGGGTGCGTTATCCAT 3300849 31 100.0 34 CGTTATCCAT ............................... CCGGAGTTGTGACGGTACGTTGTGCGCCTTTCGG 3300914 31 96.8 CGCCTTTCGG ..............................T CAGTTTGGCCATGTATGTGATCTTCGGCATTTCGTG ========== ====== ====== ====== ========== =============================== 4 31 35 GTTTCAATTCCTCATAGGTACGATCAAAACG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.29%AT] # Reference repeat match suggestion: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [135,301] Score: 0.18/0.18 # # Final direction: R [0.41,5.55 Confidence: HIGH] >NC_019897 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 3298626 30 100.0 35 ACGTTGACGA .............................. GAAGGAGTTTACCGTCGCCGTCATAACGCTGGAGT 3298691 30 100.0 37 ACGCTGGAGT .............................. GAATCTATCCGCTCTTCGCGCCGGAAGCGACAAAGCA 3298758 30 100.0 40 CGACAAAGCA .............................. AGGTGGAGAGCGAAAAGGTGTACAAACTTCCAGATCATCA 3298828 30 100.0 36 CAGATCATCA .............................. GAAACGCCACGATGTCCGGTTTCTCCCTCTCATCCT 3298894 30 100.0 36 CTCTCATCCT .............................. CTATATAGCACCTGAAAACATTACGGCTATCTGTGA 3298960 30 100.0 38 CTATCTGTGA .............................. CCAGACAGCGGAGAATACGGCGCGACGCCATATGTAAA 3299028 30 100.0 CATATGTAAA .............................. TGAGGTGGTTGTGAATTATAGAAGCCTGAAAACAGG ========== ====== ====== ====== ========== ============================== 7 30 37 GTTTCAATTCCTCATAGGTACGATCAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [137,298] Score: 0.18/0.18 # # Final direction: R [0,5.55 Confidence: HIGH] >NC_019897 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 3302601 30 100.0 36 AATCCGTATG .............................. TTTGCATGTACATGGGCAGGCGCGGAACAGAGATCG 3302667 30 100.0 35 ACAGAGATCG .............................. GGCCACGATCTCACCCACGCTGTCGTCACCGGTGT 3302732 30 100.0 TCACCGGTGT .............................. CCCAAAAATCC ========== ====== ====== ====== ========== ============================== 3 30 35 GTTTCAATTCCTCATAGGTACGATCAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [942,259] Score: 0.18/0.18 # # Final direction: R [0.18,5.37 Confidence: HIGH] >NC_019897 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 3418362 32 100.0 38 AAGTGGTGCA ................................ AGGCATCGGCCATTCACTTGGTCCCGTCCTGCCCGGAG 3418432 32 100.0 34 CTGCCCGGAG ................................ ATGTACAACGGATCCGGGCGTATCGTAAAACTGG 3418498 32 100.0 38 GTAAAACTGG ................................ CTTGTAGGTACGATAGCGGCTTCCCGCGACCATCGCCC 3418568 32 100.0 34 ACCATCGCCC ................................ AGGATCCGCGCAAATTTCTGGCTGGTCTTGACAA 3418634 32 100.0 37 GTCTTGACAA ................................ ATCTCCCGCAGCCGTTGCGTCCATGCCGCCGACACGT 3418703 32 100.0 35 GCCGACACGT ................................ TCTATATACGCGCATATACGTGTATGCGCGCATAA 3418770 32 100.0 34 GCGCGCATAA ................................ TATTTTCATTTTCCAGCCCGTCTTTTATATTTCC 3418836 32 100.0 35 TTATATTTCC ................................ ATGTACAACGGATCCCGGGCGTATCGTAAAACTGG 3418903 32 100.0 38 GTAAAACTGG ................................ CTTGTAGGTACGATAGCGGCTTCCCGCGACCATCGCCC 3418973 32 100.0 38 ACCATCGCCC ................................ GATCAATTTTCGCTCGTTCGTGGTCGGTTTGTATTCGT 3419043 32 100.0 37 TTGTATTCGT ................................ CAATTCATGGCCCGCCGGAATCTCGAATGCCAATCCA 3419112 32 100.0 35 TGCCAATCCA ................................ CTGTCGCCGAAGATTTTGGGATACCAATCCTTTTA 3419179 32 100.0 36 AATCCTTTTA ................................ GCGTTGATTTCGCGTATCTTGGCGAGGTCCCGATAG 3419247 32 100.0 39 GTCCCGATAG ................................ ATCTTATTCGCACGCTACCCCGTCGCCATCTCGATCCAA 3419318 32 100.0 36 CTCGATCCAA ................................ ACTGCTTCGCCTTCGTCGTTGTATGCCCGTGACCGG 3419386 32 100.0 40 CCGTGACCGG ................................ ACATCAGCGAATGCCGAAGTGATCGCGCCGACCGTCGCGG 3419458 32 100.0 38 ACCGTCGCGG ................................ TCCGAGACCTTGCCGGTCATCGTTGGGTGAGCGTGCGG 3419528 32 100.0 34 GAGCGTGCGG ................................ CTCCTTCTGCATTTCAAGTTTGATATCACTTAAA 3419594 32 100.0 37 ATCACTTAAA ................................ CTCGCTCATACGCTCACCTCAATTACAAGCGCTTCAG 3419663 32 100.0 34 AGCGCTTCAG ................................ AGATCCAAGAATCGTCTGCAAGGTTTGCAGCCCC 3419729 32 100.0 34 TTGCAGCCCC ................................ AAGAAGGGCCTGCGCAAACGTCTTGAATTGTTTG 3419795 32 100.0 37 GAATTGTTTG ................................ CTCGCTCATACGCTCACCTCAATTACAAGCGCTTCAG 3419864 32 100.0 36 AGCGCTTCAG ................................ CGCCACAATGGCCGCCCCTCGAACACGGCGTCCGGC 3419932 32 100.0 36 GGCGTCCGGC ................................ ATCTCACTTTTCGCAAGGCCAAGTTTTGGATAACTC 3420000 32 100.0 38 TGGATAACTC ................................ GCACAAATGGAACAACTTTTGGATGAACAACTCGGCAA 3420070 32 100.0 34 AACTCGGCAA ................................ CGTCTGCTGTAGTTGTGTTCAGGCCTGGAGTGCC 3420136 32 100.0 37 CTGGAGTGCC ................................ ACGGCATTGCGGTTCAGCCTATTGATTGCGGTTGTCA 3420205 32 100.0 35 GCGGTTGTCA ................................ GGGGGTGTTGAAATGGCGACGAACACCGTCAAAGT 3420272 32 100.0 36 CCGTCAAAGT ................................ TGCGAAGAATACTTCAACTGCGAATACTGGTGGCGC 3420340 32 100.0 36 CTGGTGGCGC ................................ ATCGCCAGCGCCAAATTGAAAGCTACAATATCACGC 3420408 32 100.0 33 AATATCACGC ................................ CTCATCCGCGTATGCAAACGGGTCAAATGCCGT 3420473 32 100.0 35 CAAATGCCGT ................................ TGGTACGTGCGGATCACGTTGTACCGCTTACCCTC 3420540 32 100.0 35 GCTTACCCTC ................................ CCATCTCAGCCGCCGACCGCTCTTGTGTCAGCCCC 3420607 32 100.0 34 TGTCAGCCCC ................................ CTGATAGCAGAGGTCGAACAGAACCGTGCTGTCC 3420673 32 100.0 34 CGTGCTGTCC ................................ GCGCGGGATTTCGAACGGCTCGACGACGTGAATG 3420739 32 100.0 34 GACGTGAATG ................................ CAGCGCGGCGAGATCAGCGAAGGGCAGTACCGGG 3420805 32 100.0 35 CAGTACCGGG ................................ GTAGGAAAAACAATTGATAGCGAAATCCCGGTTTA 3420872 32 100.0 35 TCCCGGTTTA ................................ TCATTAACGCCCGTTGTTCTTCCTGCAGGCGCTTG 3420939 32 100.0 35 CAGGCGCTTG ................................ TCATTAACGCCCGTTGTTCTTCCTGCAGGCGCTTG 3421006 32 96.9 CAGGCGCTTG ...............................T ACCGCCGAGA ========== ====== ====== ====== ========== ================================ 40 32 35 GTCGCCCGCTGTGCGCGGGCGTGGGTTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [45.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [184,194] Score: 0/0.18 # # Final direction: R [0.68,0.74 Confidence: LOW] >NC_019897 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================== ====== 3591239 21 100.0 31 GCCCCGTCTG ..................... TTGGGCACGCTGCCACGCCCGAACGGTCAAT 3591291 21 95.2 41 AACGGTCAAT ...........C......... TTTCCCTCTTTCGGGCGAAGGCTTCGGCCGCGAGCCGTCTG 3591353 21 100.0 31 GAGCCGTCTG ..................... TTGGGCACGCTGCCACGCCCGAACGGTCAAT 3591405 21 95.2 41 AACGGTCAAT ...........C......... ATTCCCTCTTTCGGGCGGAAGCTTCGGCCGCGAGCCGCCTG 3591467 21 100.0 31 GAGCCGCCTG ..................... TTGGGCACGATGCTACGCCCGAACGGTCAAT 3591519 21 95.2 41 AACGGTCAAT ...........C......... ATTCCCTCTTTCGGGCGGAAGCTTCGGCCGCGAGCCGCCTG 3591581 21 100.0 31 GAGCCGCCTG ..................... TTGGGCACGCTGCCACGCCCGAACGGTCAAT 3591633 21 95.2 AACGGTCAAT ...........C......... GCCGCCCCGAC ========== ====== ====== ====== ========== ===================== 8 21 35 TAACGGCACCAAGTGCCGTTA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.80,-2.80] Score: 0/0.37 # Array degeneracy analysis suggestion: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [31.7-33.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [36,137] Score: 0.18/0.18 # # Final direction: F [0.78,0.18 Confidence: MEDIUM] >NC_019902 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1443768 37 100.0 34 GAGGCATGCA ..................................... CCCCCGGTAAGAAGGAGGAAGAGACTCCAATGAG 1443839 37 100.0 34 CTCCAATGAG ..................................... CCAGCGCCCACGGCCGGCTTCTCCGTGGGTGATG 1443910 37 100.0 32 GTGGGTGATG ..................................... TCCATCTTCTCCGCAATCTCCGCATACGCTTC 1443979 37 100.0 35 CATACGCTTC ..................................... CTCGCCCTTGTTCCAGTAGTTCGCGCCTGGGATCG 1444051 37 100.0 33 CCTGGGATCG ..................................... TCGACCCCAACGTTCCTGTTTACACGGTGTCGG 1444121 37 100.0 32 ACGGTGTCGG ..................................... CCAGTCGGCAGGCTCATTGTAGAGCCGGCCAA 1444190 37 100.0 34 AGCCGGCCAA ..................................... CTCTTTTCGGCATCGGCATTTCAAAAGTCCTCCA 1444261 37 100.0 34 AAGTCCTCCA ..................................... TTCTTGGTAAACCCTGATCTTCTCTCCGAGTGCC 1444332 37 100.0 34 TCCGAGTGCC ..................................... CCGCCTCCCGTATTCGGCCAGACAAACGGCATCG 1444403 37 100.0 32 AACGGCATCG ..................................... CCGTATGACCAGCCGAGACATCTCTTGAAGCT 1444472 37 100.0 34 TCTTGAAGCT ..................................... GCCAGTTGGGATGTGTGTGATGCGGATTCGGAAC 1444543 37 100.0 32 GATTCGGAAC ..................................... TCCTTCTGTTATTCGATAGAAGGCCCGTCTCG 1444612 37 100.0 32 GCCCGTCTCG ..................................... TGATCGTCAGGGTGACCTTCTGGCCCGCGGCC 1444681 37 100.0 33 GCCCGCGGCC ..................................... ATCTCGCGCAGCACGTCTTCGATGTTCATGGCT 1444751 37 100.0 33 GTTCATGGCT ..................................... GTGTAGGTGCCGGTCTTTACGGCGATGTCGTAG 1444821 37 100.0 34 GATGTCGTAG ..................................... CCTTGGCCGGGAACGCATAGATCTGCTTGGTGAT 1444892 37 100.0 34 GCTTGGTGAT ..................................... CCATGCTCATCGTGCATCTCGACTGCCTTAAACC 1444963 37 100.0 33 GCCTTAAACC ..................................... GCCTGCCGCCACTTCGGACTGCAACCCCATGAA 1445033 37 100.0 32 ACCCCATGAA ..................................... ATAACGCCGATGGTGGGTAGCCAGCTCACGAC 1445102 37 100.0 33 AGCTCACGAC ..................................... GGCTCGTCGTTGGCATTGCGTAGCATGGCCGAC 1445172 37 100.0 34 CATGGCCGAC ..................................... ATCCAGTTCGTCGAGGTATTTCGCATTCGCCGTC 1445243 37 100.0 33 ATTCGCCGTC ..................................... AGTGAGTTCGGTCGACAGTTTCTTCGGGTCCAG 1445313 37 100.0 33 TCGGGTCCAG ..................................... AATCCACGTCCGCTGGGGGCGGGCCCGCAGGGG 1445383 37 100.0 34 CCCGCAGGGG ..................................... CTCCGTCTCTGGTGCGGTTTAGGATTCGATCAGC 1445454 37 100.0 33 TTCGATCAGC ..................................... TCGCGGTCGGATGGGTGCTGAGCGCCGGGCGGG 1445524 37 100.0 33 GCCGGGCGGG ..................................... CCTTACGGACCTGTTCCTGTTCCAGGGTTTCGA 1445594 37 100.0 34 AGGGTTTCGA ..................................... CCGCCTGGACGACGCTTCACGCATCGCCTGGATG 1445665 37 100.0 33 CGCCTGGATG ..................................... AGAGCTCTTCAATGGTCTCTTCACGCAGGTTAA 1445735 37 100.0 32 CGCAGGTTAA ..................................... CACCGCCAGGTGGTGGTGCTCCATCGCCGGGT 1445804 37 97.3 32 ATCGCCGGGT ...............T..................... TGGTCTTCGCACAGCAAATAGCTTCGGTTGCA 1445873 37 97.3 TTCGGTTGCA ...............................G..... GGTACTCAGG ========== ====== ====== ====== ========== ===================================== 31 37 33 GTCAGAACGACTTCCCTGATGAAGAAGGGATTAAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.05%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.10,-6.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [214,503] Score: 0.18/0.18 # # Final direction: F [1.05,0.18 Confidence: HIGH] >NC_019902 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================================== ====== 1466860 38 100.0 33 TGGCGGGCCT ...................................... ATCGTGACTCGCGTGATGACGCAGCCCTTCTTG 1466931 38 100.0 32 GCCCTTCTTG ...................................... GTCAAGCCGCGTCGTGTTCAGCACGGTGTAGG 1467001 38 100.0 34 ACGGTGTAGG ...................................... GGTGTCACCCACTGGCCCCGCCATTGAACAGACC 1467073 38 97.4 TGAACAGACC .....................................C GTGAGTTGA ========== ====== ====== ====== ========== ====================================== 4 38 33 GTCAGAACGACTTCCCTGATGAAGAAGGGATTAAGACG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.63%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.10,-6.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [43.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [219,18] Score: 0.18/0.18 # # Final direction: F [0.96,0.27 Confidence: MEDIUM] >NC_019902 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1466441 37 100.0 33 AGGCCATGCA ..................................... GCCGCCGCCGCTCTTGATGCCGCGCATGTACTG 1466511 37 100.0 33 GCATGTACTG ..................................... TGGTTCAGTATGTCGAGGTATCGCATGTCGTTC 1466581 37 100.0 34 CATGTCGTTC ..................................... CCCGGATCGTCCGGGCGAGCAGTAGCTGGGTGTG 1466652 37 100.0 33 GCTGGGTGTG ..................................... GAATCGGTGCTCCGCACTTTTCGCACTCGCCGC 1466722 37 100.0 CACTCGCCGC ..................................... GTGTGGGTAG ========== ====== ====== ====== ========== ===================================== 5 37 33 GTCAGAACGACTTCCCTGATGAAGAAGGGATTAAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.05%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.10,-6.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [43.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [124,370] Score: 0.18/0.18 # # Final direction: R [0.37,0.45 Confidence: LOW] >NC_019902 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1467212 37 100.0 34 CTCAGCCAGC ..................................... AGCAGGAACGCCGCAAACTGCTCTTTACCGGCAT 1467283 37 100.0 35 TTACCGGCAT ..................................... AGATCGATGAAGGTCGGCTTGGGTTCGCGTTCGAG 1467355 37 100.0 35 CGCGTTCGAG ..................................... TTTTTCTTTGAACTTGGCTTGTCTGGTAGCCCCGT 1467427 37 100.0 GTAGCCCCGT ..................................... GGCTGGCCGCGTCCATGGCATCCATGTCACGGC ========== ====== ====== ====== ========== ===================================== 4 37 34 GTCAGAACGACTTCCCTGATGAAGAAGGGATTAAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.05%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.10,-6.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [571,118] Score: 0.18/0.18 # # Final direction: F [0.55,0 Confidence: HIGH] >NC_019902 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1469966 37 100.0 31 CATCGGTGGG ..................................... TGCCCTGACGGACGCTGTTGAGGTTCTGCAG 1470034 37 100.0 33 GGTTCTGCAG ..................................... GCGTTCGGCATCCACGCCGTGACCAGGACATCG 1470104 37 100.0 34 CAGGACATCG ..................................... ATGGACTTGGTCTCTCCTGTACTGAGCGTGGTGT 1470175 37 100.0 33 AGCGTGGTGT ..................................... CGCCGGTCACCGCTTCGTCCACGCGGTCGGCCT 1470245 37 100.0 34 CGGTCGGCCT ..................................... CATCGGCCGGGAACACGGTGGCCCGCAAGGTTTG 1470316 37 100.0 33 GCAAGGTTTG ..................................... AGCTCACCGTGGCAAAGGCATCGAAATGCCGGA 1470386 37 100.0 33 AAATGCCGGA ..................................... GGCCAGTCGGCACCGACTTCCTCGGCCAGGGCG 1470456 37 100.0 32 GGCCAGGGCG ..................................... GTAACTGCGGTCATACCCTGTACTTGCCGTGC 1470525 37 100.0 32 CTTGCCGTGC ..................................... CGGTCCATGAACTCGTCGTATCCAAGCGCTGA 1470594 37 100.0 33 CAAGCGCTGA ..................................... AAGCGGACGCCTCACACTGACCACGCCTACCCT 1470664 37 100.0 32 CGCCTACCCT ..................................... CAAACAACCCTGGCGGGATTACATCAAGAAAA 1470733 37 100.0 32 ATCAAGAAAA ..................................... TGGGGAACTCATGCGGCTTATCGCCGCCTTGG 1470802 37 100.0 34 GCCGCCTTGG ..................................... AGGTCTGCGAAGGTGTTCGTGTACCTTGCGCATG 1470873 37 100.0 35 CTTGCGCATG ..................................... GGTACTGAGCGCTCGGTGCTTGCTTCTTCTTCGTG 1470945 37 100.0 34 CTTCTTCGTG ..................................... TTCGCAATTTCTGAGGATCATTCGTGTTCTTCGT 1471016 37 100.0 TGTTCTTCGT ..................................... TCTTGAC ========== ====== ====== ====== ========== ===================================== 16 37 33 GTCAGAACGACTTCCCTGATGAAGAAGGGATTAAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.05%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.10,-6.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1461,196] Score: 0.18/0.18 # # Final direction: F [0.55,0 Confidence: HIGH] >NC_019902 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2926847 29 100.0 32 AGTATGAGGA ............................. TTTGCCGGGTTAACGGCGGGGACGCTGGTTGG 2926908 29 100.0 32 CGCTGGTTGG ............................. GGCGCTCTACCCATGCGCCTGACCCGTCCGGA 2926969 29 100.0 32 CCCGTCCGGA ............................. CCGCGGTTCGAGATAGCCCGAAGACTGCGTCA 2927030 29 100.0 32 GACTGCGTCA ............................. CGTTAACGTCCAGCACCCCTTCGATGTTAATG 2927091 29 100.0 32 GATGTTAATG ............................. GCCTGCAATCACCACTCCGTGGTTGCATTTTT 2927152 29 96.6 32 TTGCATTTTT ......................A...... GGCTGATGGCGGGGCTGTTCCGGTTGGTCTGC 2927213 29 100.0 32 GTTGGTCTGC ............................. GACCTCCACCGTTGCGGTCGCACGCTGCACGA 2927274 29 100.0 32 CGCTGCACGA ............................. TTGCCACAATCACGTCTGCGCCTCCCGATATT 2927335 29 100.0 32 TCCCGATATT ............................. CGCACCGCCAAGACCGGCGGCGCCGCCCAGGC 2927396 29 100.0 CCGCCCAGGC ............................. TCGGCCCGCG ========== ====== ====== ====== ========== ============================= 10 29 32 CGGTTCATCCCCGCGCGGGCGGGGAACGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [3,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-13.50,-12.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [30.0-30.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [248,180] Score: 0/0.18 # # Final direction: F [0.78,0 Confidence: HIGH] >NC_019902 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2520192 28 100.0 32 GAGCGAAAGA ............................ CAGGGATAGGTGATGGTTCTATTACGGTTATG 2520252 28 100.0 32 TACGGTTATG ............................ GGATTTCGCTGTTTCCGAACAGGTCACTCATA 2520312 28 100.0 32 GTCACTCATA ............................ GAACAAAGACCGGCTCCGCGAGCTGGTGCAAA 2520372 28 100.0 32 CTGGTGCAAA ............................ GTTATGGCCCGACCAAGCGCTTCGGCGACGAT 2520432 28 100.0 32 CGGCGACGAT ............................ GGGGGATATTCATTCGTAGGCCTTTACAATGC 2520492 28 100.0 32 TTTACAATGC ............................ CTCAATCAGAAGGGCTTCTCCACCCGCTACAT 2520552 28 100.0 32 CCCGCTACAT ............................ GTGATCCCGAGATTGGATAGCTCGCGGCGCAT 2520612 28 100.0 32 CGCGGCGCAT ............................ CTGGGTCACGACCAGCTTGGCCCCGCCGTAGA 2520672 28 100.0 33 CCGCCGTAGA ............................ GGTGTCGATATTGGCAATGTCTTGTGCTGGTGT 2520733 28 100.0 32 GTGCTGGTGT ............................ AACAGCATTCGTTTCGTGATCGGGGGGATGAC 2520793 28 100.0 32 GGGGGATGAC ............................ TTGACGGGAATAGATACGGTCCATGCGCCACA 2520853 28 100.0 32 ATGCGCCACA ............................ GGACACGCGGGCGCGGCGGTCCCCAAACAGGA 2520913 28 100.0 32 CCAAACAGGA ............................ GGCCAGGACAACGGCGCGAAGAAGCTGCAAGA 2520973 28 100.0 32 AGCTGCAAGA ............................ GGTGGGGTCGGTTAGCGTCTGCACGACGTTCA 2521033 28 100.0 32 ACGACGTTCA ............................ GATTTCCATCTCGTTGATCGTCTTGTAGTTGC 2521093 28 100.0 32 TTGTAGTTGC ............................ AAAGTCGCCGGCCTGGATCCCGCCGAGATCAA 2521153 28 100.0 32 CCGAGATCAA ............................ CCGGCCCTACCTCGATGCCTCCCGCGACGTCT 2521213 28 100.0 32 CGCGACGTCT ............................ GGCCTGCTGATGGAGCTCCGTTCCGACACGCA 2521273 28 100.0 32 CCGACACGCA ............................ GCGGCACTACACCCACAGCCACCTCAGCCGCT 2521333 28 100.0 32 CTCAGCCGCT ............................ GATCGTGCGGCTACGTCGGAACCTGACCTGGT 2521393 28 100.0 32 CTGACCTGGT ............................ GACGGCGGCGACATGACCGCGGCGAGCCTCGA 2521453 28 100.0 32 CGAGCCTCGA ............................ TTCGAGATCACGCGGGAAATGCTCCTGCAGAT 2521513 28 100.0 32 TCCTGCAGAT ............................ TCAGCGTCTGCTGGCGGTACGTCGTGCTCGAG 2521573 28 100.0 32 CGTGCTCGAG ............................ CGTTACCCCGCCCGGGAGATGCAGAGGAACCT 2521633 28 100.0 32 AGAGGAACCT ............................ GACGAGGCGGACCCCGCGGCGTTCGTCTCGCT 2521693 28 100.0 32 TCGTCTCGCT ............................ GCGAGCACCTGCTCGATCAATTTGACCCCCGT 2521753 28 100.0 32 TGACCCCCGT ............................ GTGAAGCTGCGGATCGATCTCGATGCGGACGT 2521813 28 100.0 32 ATGCGGACGT ............................ GGTCGGCTCCAGAAGCGCCTTCGAACGCCACA 2521873 28 100.0 33 GAACGCCACA ............................ CCACCACGCCGCGCTTGGACACGCAGCCCAGCG 2521934 28 100.0 32 CAGCCCAGCG ............................ CTGATCGCGGTCACCAAGGGCACTCCCTACGT 2521994 28 100.0 32 CTCCCTACGT ............................ CCGGGGCCGGCACGCCGCGGCCGTGTTTCAGG 2522054 28 100.0 32 GTGTTTCAGG ............................ GAGGAGCAGCAGGCCGCCAAGGATCACCTACA 2522114 28 100.0 32 ATCACCTACA ............................ AGCGGCGACGCACTGGCTCTGACGTTTGATCA 2522174 28 100.0 32 CGTTTGATCA ............................ GCCTGGATCTGGCTCGGCGTCATGCGCTCGAG 2522234 28 100.0 32 TGCGCTCGAG ............................ GCGTACATCGACAGCCACCGCGGCATCCCATA 2522294 28 100.0 32 GCATCCCATA ............................ CCTGGATTGCCGTACCTGGAGTCGGCGTTACC 2522354 28 100.0 32 CGGCGTTACC ............................ GTAGGCACACGTCCGTTGCCACTTCTCCAGCA 2522414 28 100.0 32 TTCTCCAGCA ............................ CGAGCCCCCGCCATCCCCTGATCTGACCGAGA 2522474 28 100.0 32 CTGACCGAGA ............................ GCAATCTCCGCATACGCTTCGGCGTCGGTGTT 2522534 28 100.0 32 CGTCGGTGTT ............................ CGCAGACCGACGCGGCAGCCTTCCAGTCGGGC 2522594 28 100.0 32 CCAGTCGGGC ............................ GCGTGATCGCGCCGCCGGTCAGGAGGCCATAA 2522654 28 100.0 32 GAGGCCATAA ............................ AAGAAATGACCTCCACTGACAACATCGTCTTT 2522714 28 100.0 32 CATCGTCTTT ............................ ACGGCCACCGGTGTAGACGACGACGGCGAAGA 2522774 28 100.0 33 ACGGCGAAGA ............................ AGACGACACGCTCGGCGGCTTGGCGCATGGGAT 2522835 28 100.0 32 CGCATGGGAT ............................ ACTGTGGGCGGTTTCGCCTTCATGATTGACAA 2522895 28 100.0 33 TGATTGACAA ............................ AAAAATCTGATGCCGGAGACACCTACGCAACAG 2522956 28 100.0 32 TACGCAACAG ............................ CTGACCGCTCAATGGCCGCCGCGATGAACAAA 2523016 28 100.0 32 GATGAACAAA ............................ GCCGAACGCTTGAGTTAAAGCGCCGACTGTAA 2523076 28 100.0 33 CCGACTGTAA ............................ GCATATCAAGTGCAGTTACGCCAGCGGCGACGT 2523137 28 100.0 32 GCGGCGACGT ............................ TTCCAGACCCGGAGGGAGAATTCGAATACCAA 2523197 28 100.0 32 CGAATACCAA ............................ TTTGGGTTCTCCGGCGTGGTGGACCCGGACGA 2523257 28 100.0 32 ACCCGGACGA ............................ AATTGTGGGGCGCGCTGATGGTGCCGGGAGCG 2523317 28 100.0 32 GCCGGGAGCG ............................ CAGAAGGGCAAGGACAAGCTGTTCAAGGCGGT 2523377 28 100.0 32 TCAAGGCGGT ............................ AGCGGTGGGCTGGATAGCCTGGTCGAGTTCGT 2523437 28 100.0 32 TCGAGTTCGT ............................ GTGCAGCCGCCCCACCGACACATGGAAGAAGT 2523497 28 100.0 32 TGGAAGAAGT ............................ CAGGGCCACGAGGCGCTGCATGCTCTGGCTCA 2523557 28 100.0 33 CTCTGGCTCA ............................ CGACGCGCCCGGGAGCTGCAGGCGGAGCTCGAG 2523618 28 100.0 33 GGAGCTCGAG ............................ GGAAAAAATCGAGCGCGACGAGCGGCCCAATCA 2523679 28 100.0 33 GGCCCAATCA ............................ GCGAGACAGCGAGAACGGCGCGGAGAACTGCCG 2523740 28 100.0 32 AGAACTGCCG ............................ TGCAAGCCTTGGCCGAGGACATCGCCGCAAAC 2523800 28 100.0 32 CGCCGCAAAC ............................ ATCATCGAGGAAGCCGCCAAGGTCGGCAGCCA 2523860 28 100.0 TCGGCAGCCA ............................ TAGCGCTCTA ========== ====== ====== ====== ========== ============================ 62 28 32 TTTCTGAGCTGCCTGCGCGGCAGCGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [40.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [137,134] Score: 0/0.18 # # Final direction: R [0,1.01 Confidence: HIGH] >NC_019902 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2928217 28 100.0 32 TGATCTGGAT ............................ CTGGCCCAAGCCGACGACCCCGGCTGCTACGA 2928277 28 100.0 33 GCTGCTACGA ............................ ACAACTCCGTCTCGGTATCCGTCAGCATCTGCG 2928338 28 100.0 32 AGCATCTGCG ............................ CCGGTCCGTTTGTGAGCGTCTGCGTCGGGGCA 2928398 28 100.0 32 CGTCGGGGCA ............................ TCGGCCGCCTATGACGCCGGCCTGATCTCCGA 2928458 28 100.0 32 TGATCTCCGA ............................ TGCGGGAAGCTGCTCGATCGTTGTCACGCCTA 2928518 28 100.0 32 GTCACGCCTA ............................ GGCGGCAGTCCGGTGGTCGCGATTTTGGATGA 2928578 28 100.0 TTTTGGATGA ............................ ATGGAGCCTC ========== ====== ====== ====== ========== ============================ 7 28 32 TTTCTGAGCTGCCTGCGCGGCAGCGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [107,114] Score: 0/0.18 # # Final direction: R [0,0.74 Confidence: HIGH] >NC_019902 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2931057 28 100.0 32 CCCCTCCGTA ............................ GCTGGCGGGAACCTCATGAGCATGGCTGGCGA 2931117 28 100.0 33 TGGCTGGCGA ............................ CAGGAATCGACGTCGAGGGATGCGCTGAACTCC 2931178 28 100.0 32 GCTGAACTCC ............................ GGCGGGGTGTAACTCACTCCGGTTTTTCTCCC 2931238 28 100.0 32 TTTTTCTCCC ............................ GAAATCCGGGGCTTGGGATGGCTGGGGGACCA 2931298 28 100.0 32 TGGGGGACCA ............................ CGGGTAGGCGCGGTCACCCGAGCTACGCCGCA 2931358 28 100.0 32 CTACGCCGCA ............................ GGGCTCGGTCAGGAGCGCCAGCCTTGCGTTTA 2931418 28 100.0 32 CTTGCGTTTA ............................ GAAGGCTGCGACACCGACCGCTGGGTGCTTAG 2931478 28 100.0 32 GGGTGCTTAG ............................ CTGCTGCGCGCGATCGAGACTGACCTTGCGAG 2931538 28 100.0 32 ACCTTGCGAG ............................ CGTCAGACCGACGCGGCGCGTGAGGCGCGCAA 2931598 28 100.0 32 AGGCGCGCAA ............................ TCCACGGCGGTATTGAACTCCTCCATGCTGGA 2931658 28 100.0 32 CCATGCTGGA ............................ AGTCCCCGAACCGCGTCAGGAGACTAGTCACG 2931718 28 100.0 32 ACTAGTCACG ............................ GCGCGGCCGCGGCCGGAGATCCGCAACCAGGA 2931778 28 100.0 32 GCAACCAGGA ............................ ATCTCAAAGCCTGAATTGGCAGATTGCATCAT 2931838 28 100.0 32 ATTGCATCAT ............................ GGTGCGGGATGCGGGGTTGCCGTCTTTGTCGA 2931898 28 100.0 33 TCTTTGTCGA ............................ TCGATTTGCATGCCTGCGGTGACTGGCGGGATT 2931959 28 96.4 32 TGGCGGGATT ..............A............. GGGGCGATCAGGTCGGGGGGTCGAGGGATCGA 2932019 28 100.0 GAGGGATCGA ............................ GCTGTGTATG ========== ====== ====== ====== ========== ============================ 17 28 32 TTTCTGAGCTGCCTGCGCGGCAGCGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [46.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [83,65] Score: 0/0.18 # # Final direction: R [0.68,0.74 Confidence: LOW] >NC_019940 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1382797 36 100.0 36 NNNNNNNNNN CACGT...AG.......................... CCTTGGTCTCCGACCTGTGCGGACAATGTCTCGCCC 1382869 36 100.0 37 NNNNNNNNNN .............TA..........T.......... GTCCACGCGAACTCCTCCGGCCAATGCAGGGTGGCCG 1382942 36 100.0 39 NNNNNNNNNN .................................... CGGTCTTCCGCAAGCACTGCGCGCCCTTCTGGCGACCGT 1383017 36 100.0 38 NNNNNNNNNN .................................... GTAGTCGATCGTGCCTTGCCCCTTGTAGCTCCTCCACA 1383091 36 100.0 36 NNNNNNNNNN .................................... CAACACCGACTGCACCCTCGCCACGTCGGCCGGATC 1383163 36 100.0 37 NNNNNNNNNN .................................... CGTTCTTCCCGGAGACGTGGACCGTAGCCCTCGGCGA 1383236 36 100.0 37 NNNNNNNNNN .................................... TCACCCGCGAGCACGGCGGCACCACGCTGGCGCTACC 1383309 36 100.0 36 NNNNNNNNNN .................................... GGTCGCGACGGTCGGTGTGAAGATGGGGACGACGAG 1383381 36 100.0 35 NNNNNNNNNN .................................... TGTCAGACGGTCGGTTGCGCGGCCTGACGTATGTT 1383452 36 100.0 38 NNNNNNNNNN .................................... GCACTGGCGCCGGCTAATCACCGCACAACCCCGCCAGC 1383526 36 100.0 36 NNNNNNNNNN .................................... ACCGAAATGATAGGCGCCCATAACATGGCACCGGAT 1383598 36 100.0 37 NNNNNNNNNN .................................... AACAACAACCGCAACGGACGATGGAGTTTCTCGCGGA 1383671 36 100.0 36 NNNNNNNNNN .................................... CCTGCCCCTGCCCCGCGTCGCGCCTATCGAGCATCT 1383743 36 100.0 36 NNNNNNNNNN .................................... ACAGTAAATGGCGAGTACGAAGAGGTGGCAACAGAC 1383815 36 100.0 36 NNNNNNNNNN .................................... CCGTTGCCGCAACCGCCGGCGCCACGACGGCCCGCC 1383887 36 100.0 36 NNNNNNNNNN .................................... GTCGTCGGCGTGGATGGCACCGGTCGCGTAGGACCA 1383959 36 100.0 36 NNNNNNNNNN .................................... AGCGCTGCCGGCAATCCACACGGGCGCCGTGCCGAA 1384031 36 100.0 38 NNNNNNNNNN .................................... GTGTAGAGAGGCAGCACTGGATTATGTTCTGGCTCCAT 1384105 36 100.0 36 NNNNNNNNNN .................................... GCTGGGCCGCGACCAAACCACAGAGTGGCCCCGGAC 1384177 36 100.0 37 NNNNNNNNNN .................................... CAGAGCGTCCGTGAGCGGCTCGCTGAGGTCCGCAAGG 1384250 36 100.0 37 NNNNNNNNNN .................................... AATCAGGGATAAAAACGCTTCCGGCAACGGCTCAGGC 1384323 36 100.0 36 NNNNNNNNNN .................................... GTCGCCGCCGTTGTCCCACTGGGTGTGCGCGGCATC 1384395 36 100.0 37 NNNNNNNNNN .................................... CCCGCTACGCCACCATCCGCGCCGCCTGGCGCGCCGT 1384468 36 100.0 37 NNNNNNNNNN .................................... GCGGGGGAGAAGCACGGGCACAAATCGGATTACACGG 1384541 36 100.0 35 NNNNNNNNNN .................................... GCCGAGAAGACGGCGGAGCTCAATGCCGAGCAGTC 1384612 36 100.0 36 NNNNNNNNNN .................................... GCGTAGGATGGAGCGACAACTCTGGTGGTTGGGATT 1384684 36 100.0 40 NNNNNNNNNN .................................... ATGCCAACGCCGTCGGCACCGGCATGAAGGTCTCTTACGA 1384760 36 100.0 36 NNNNNNNNNN .................................... GTCGCCGACAAGGCTCAGCCGGGCAGCGCTCAATAC 1384832 36 100.0 36 NNNNNNNNNN .................................... CGCTGAACTCGACCACGGTGCGGTCGAAGCTGTAAG 1384904 36 100.0 35 NNNNNNNNNN .................................... TCCGCGGCCAATCGCCTGTTCAAGGAGGCCCTGCC 1384975 36 100.0 36 NNNNNNNNNN .................................... TTCCGCCCCTTGGTGCTCCAGCCGCGGGCTGGAGAA 1385047 36 100.0 38 NNNNNNNNNN .................................... GTGTGGCAGGAGTTTGTTGATTTCCACGAGATTCGAAT 1385121 36 100.0 39 NNNNNNNNNN .................................... CGGCGCCCACGGCTCGCCCCAGGGGCTGGTTTCGTTCTG 1385196 36 100.0 37 NNNNNNNNNN .................................... TGCGCGAATAGCGGCTTGAATTGATTTGGTACATTTT 1385269 36 100.0 36 NNNNNNNNNN .................................... AAAGCGAGGAACCTTGGCTATCGATTTCTCGCCGCT 1385341 36 100.0 38 NNNNNNNNNN .................................... AACATGTGCAGATTGAGCTGCTTGTCGCGGATCTGGGC 1385415 36 100.0 36 NNNNNNNNNN .................................... CTTGTCGGGCAAATACCCAACCGTTTTTATTACTCC 1385487 36 100.0 36 NNNNNNNNNN .................................... AGTGAAGGCACAATGCGATAAGGATAAGCTCCGCAA 1385559 36 100.0 38 NNNNNNNNNN .................................... CGCCTGACCGATCTTGCGCCGAGGCATGACCGCCGAAG 1385633 36 100.0 35 NNNNNNNNNN .................................... ACGATTCAAGCGCGCAATCCGAGCCAGCGGCGGTT 1385704 36 100.0 37 NNNNNNNNNN .................................... CTTACCGTGGGCTCTATTAATTTGGTCGAATCGTAAG 1385777 36 100.0 36 NNNNNNNNNN .................................... GGTTGGATTGGTGATGGCGTCGCCATTGCCAAGTAC 1385849 36 100.0 37 NNNNNNNNNN .................................... TTCATCGGGGTACACCCAATTACCGCCGAACCGGTAC 1385922 36 100.0 36 NNNNNNNNNN .................................... CGGACGTGGCCATGGAATCCAGCCAGAATCCAGCCA 1385994 36 100.0 36 NNNNNNNNNN .................................... AACGAGCGATCGTCCCGCGCGGAGAGCCGTCGCGCT 1386066 36 100.0 37 NNNNNNNNNN .................................... GCGTCCACACGGCCCGGCTCACCTGGAGTGAGCCGGA 1386139 36 100.0 35 NNNNNNNNNN .................................... GTCGGAGTGATCAGATCCCCGGTAAAGCTGCCCTG 1386210 36 100.0 36 NNNNNNNNNN .................................... GTTGTTCGCCATCCTCAAGCGCCAGCGCGAGCTTAG 1386282 36 100.0 38 NNNNNNNNNN .................................... TCCCTCGTATCCGGCTGCCACTTGCACCTCCTCGTATT 1386356 36 100.0 35 NNNNNNNNNN .................................... TAAATTGTCTATTTTTTCAATATTCGTTTCATCTA 1386427 36 100.0 36 NNNNNNNNNN .................................... CCACCACATGATCTGCGCCTGCGCCTCGTCGCCCCG 1386499 36 100.0 38 NNNNNNNNNN .................................... TCCAGTCGGACGGCCAGCGGTCCCACGAGCAAGGTCAC 1386573 36 100.0 39 NNNNNNNNNN .................................... CCTGCCTTTCGCTAATGAGGGGCTGTCCGTACCGGAGGC 1386648 36 100.0 36 NNNNNNNNNN .................................... AAGGTGCTGAGGTGGTTCCTCTTCCAATAGTCGTGG 1386720 36 100.0 37 NNNNNNNNNN .................................... TCTGTTTCCGAAGCAATTAGGGAAATGGATGAGGTTT 1386793 36 100.0 37 NNNNNNNNNN .................................... CGCAGCGTGAGATAAGCCAAATGCCGATCCTCGAAGA 1386866 36 100.0 36 NNNNNNNNNN .................................... ATGTACGTCTCATAATGATGTCGCAAACGCGCTTAT 1386938 36 100.0 36 NNNNNNNNNN .................................... GGTCACGACCGCGCGGGCGTTGGCGATGCCGCTGTA 1387010 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 59 36 36 GCTTCAATGAGGCCGCGGCTATTCGCCGCGGAATTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-15.30,-15.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [41.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [186,294] Score: 0/0.18 # # Final direction: R [0.27,1.15 Confidence: MEDIUM] >NC_019942 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1374797 30 100.0 39 AGAGGAAAAA .............................. TATCGTCCAGGGTGAGGCTCTTCTCCTTCCTGGATAGCT 1374866 30 100.0 39 CTGGATAGCT .............................. GATCCAGGCTCCAGCAAACGTTCAGAGTTCTTACACAAT 1374935 30 100.0 39 CTTACACAAT .............................. TACTGCGCAGACTGGCACGATAATTTCAGGTGTTACAAC 1375004 30 100.0 40 GTGTTACAAC .............................. CGAGGAATCATCGTATTGCCCGACAGAGGAATAAAAGGCA 1375074 30 100.0 39 ATAAAAGGCA .............................. CTCATCCGCTATCTTTTTCAGTATCCACGCCGCCTCCCT 1375143 30 100.0 41 CCGCCTCCCT .............................. CTCACCTTCCTTAACCACCCTTTCCAGTTCCTCTGCAACAC 1375214 30 100.0 38 TCTGCAACAC .............................. CTCGTGCTCATCGGTATTTCCTGGGCTCTCACGAATTT 1375282 30 100.0 42 TCACGAATTT .............................. TTTCGTGAACCTTTAGTTTGAAATACTGTGAAATCCTACCCA 1375354 30 100.0 37 ATCCTACCCA .............................. TTGAGGGGAGAGATATACCCGCAGATGCGGAGAAATT 1375421 30 100.0 CGGAGAAATT .............................. CAAGGAATAT ========== ====== ====== ====== ========== ============================== 10 30 39 CTTTCAATCCCAACATGGTCTGATTCTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.80,-0.90] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [28,142] Score: 0.18/0.18 # # Final direction: R [0,4.68 Confidence: HIGH] >NC_019940 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 355322 36 100.0 34 ACGTGCCAGA .................................... ACCGGACTCGTAGCCATTACCGAACCCGGTATAG 355392 36 100.0 34 CCCGGTATAG .................................... ACCCCTAGCATCAGCAACACTGATCTGCGCCTGC 355462 36 100.0 33 CTGCGCCTGC .................................... AACATGATCGCAACAATAAGCAATAACAATCTT 355531 36 100.0 35 TAACAATCTT .................................... CTTAAGAAGCGGGCCCCTTTCTGAGTCCAGGCGTT 355602 36 100.0 34 TCCAGGCGTT .................................... GTCACCGATCGCGCTTTTGCCACTCATGGTCGTC 355672 36 100.0 32 CATGGTCGTC .................................... CGAGAGAGAACAGTCGACTCCCCCCGATGATC 355740 36 100.0 35 CCCGATGATC .................................... GGCCTGAAAAACGGCCCATAAACCCTATACAGAAC 355811 36 100.0 35 TATACAGAAC .................................... TGTGCGAACTCTCATGGGAATCATCCTTGATTTAT 355882 36 100.0 34 CTTGATTTAT .................................... GATGTAGGCCAGCGGCGCTGACCATTGTCCAATA 355952 36 100.0 34 TTGTCCAATA .................................... CGATTTACATATAGGGATCTGTCGAGATGGATCA 356022 36 100.0 32 AGATGGATCA .................................... GTCATCCAACTAGGCATGTGAGCCTCGATACG 356090 36 100.0 33 CCTCGATACG .................................... GCAGATATTCATCCCCCCCGATAATGATTCCGA 356159 36 100.0 ATGATTCCGA .................................... GAATCGTG ========== ====== ====== ====== ========== ==================================== 13 36 33 GGCCTAGCACTTACCTGATGAAGAAGGTATTGAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.90,-4.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [41.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [110,997] Score: 0.18/0.18 # # Final direction: R [0.37,0.45 Confidence: LOW] >NC_019940 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 349566 36 100.0 34 GACTGCCAGA .................................... GGGCATCGAACGTCCCCTTCTCGCACCGCAGGGC 349636 36 100.0 33 ACCGCAGGGC .................................... GCATACGCATGCTCGTTATCTGCAATGCGAATC 349705 36 100.0 32 AATGCGAATC .................................... CTCAACAAAATCCAGTATTCCTCAGAGCCTCT 349773 36 100.0 33 CAGAGCCTCT .................................... CTAATCTCCGCGATCCCATTCCGCCGGATAACC 349842 36 100.0 32 CCGGATAACC .................................... AATCCCGTTGATCCGATGAGCAAAGCAAAGGG 349910 36 100.0 34 AAGCAAAGGG .................................... TCATCAGGAAGAAAAGATAGAGTGCGCTTCCTCC 349980 36 100.0 32 CGCTTCCTCC .................................... CCGCCAAGAACTCCGATGAATATTACGTAAGG 350048 36 100.0 TTACGTAAGG .................................... CTCGACCGA ========== ====== ====== ====== ========== ==================================== 8 36 32 GGCCTGACGCTTACCTGATGAAGAAGGTATTGAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [10,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.90,-4.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [51.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [320,670] Score: 0.18/0.18 # # Final direction: F [1.01,0.18 Confidence: HIGH] >NC_019942 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 503071 30 100.0 39 CCTGTCTGGA .............................. ATCCTCAATTCGTTATGAGATAGATTTTACAGATACCAC 503140 30 100.0 38 CAGATACCAC .............................. TTCCTTATCTATTATATCCTCAACTTTAGACAATAAAT 503208 30 96.7 36 GACAATAAAT ....................C......... ACTGCTGATGGCGTATTTGGTTTCGCTGGTGTGAGG 503274 30 100.0 37 TGGTGTGAGG .............................. AAGAGAGATTGCAAAAACAAAATAGATCACTAGCTGC 503341 30 100.0 36 CACTAGCTGC .............................. ACATGAGAAAACACCCACTTTTTTTATAGGAAATCA 503407 30 100.0 40 TAGGAAATCA .............................. GGCGAAAAGCTGTATAGACACTACATACAAGACGGCGAGA 503477 30 100.0 38 GACGGCGAGA .............................. ATGTGAAACTTTTTATAGCGACAATGCCAGGTATGAAC 503545 30 100.0 39 AGGTATGAAC .............................. TTTGATGAGGTCCGGGAGAAGGATAAAAGGTTCGGATCC 503614 30 100.0 38 GTTCGGATCC .............................. GTTGAGCCTCGCAACCTTGTCCGCCTCCTGGAGCTTCT 503682 30 100.0 38 TGGAGCTTCT .............................. AACATATCCGAAGTTAGGAGGACCCCCCATGCATTGCA 503750 30 100.0 38 ATGCATTGCA .............................. AATGAGCAAACCGCGGAGGTCAAGTGTGTCGGATTATG 503818 30 100.0 38 TCGGATTATG .............................. TCGATCCAACCAAGCCATTCCGCCTGGAGATATATCTC 503886 30 100.0 GATATATCTC .............................. CAAGGAATAT ========== ====== ====== ====== ========== ============================== 13 30 37 CTTTCAATCCCAACATGGTCTGATTCTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.80,-0.90] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [48.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [309,327] Score: 0/0.18 # # Final direction: R [0,5.18 Confidence: HIGH] >NC_019943 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2098555 37 100.0 35 NNNNNNNNNN AAAATCG..........GA..A....GC.A....... ATTACTTACACTTACCAGGGCGCGCAGTACATCAT 2098627 37 100.0 34 NNNNNNNNNN A.................................... AAAAAACAGGGGTGGATCAACCTCATGAATCGGG 2098698 37 100.0 35 NNNNNNNNNN ..................................... GACATTTACCCAATGGCTGATTGGCAGTTAGCGAT 2098770 37 100.0 39 NNNNNNNNNN ..................................... TATTTACGGCGTTCTGTTCAATCTTAACCGCCGGATAGG 2098846 37 100.0 37 NNNNNNNNNN ..................................... GTTACGGGGGAGAAGGGACTGCATTGCGGTCTTACAT 2098920 37 100.0 35 NNNNNNNNNN ..................................... ACCGAGCAGGGCAAACGCTCGCTGGCGGTTCTTGA 2098992 37 100.0 38 NNNNNNNNNN ..................................... CAGGGGTAACTTTGCTGGGTTCAAGCAGGTGTGTCCGA 2099067 37 100.0 35 NNNNNNNNNN ..................................... TCCTATAACATCGCACGCAACAGTGGTCTTTCGGG 2099139 37 100.0 35 NNNNNNNNNN ..................................... CAAGAGGCGGAAAACAAACACCTCACGGTTGACGG 2099211 37 100.0 36 NNNNNNNNNN ..................................... GGAATTATCTTGTATTCAGTCATTCGCACGATGGCT 2099284 37 100.0 35 NNNNNNNNNN ..................................... CCTATAGGTAATATAGGTAATTGTCGCCCGGCTTG 2099356 37 100.0 35 NNNNNNNNNN ..................................... AAACTCTCATTTTGGGCTTCTTTTCCAAGTGGTTT 2099428 37 100.0 34 NNNNNNNNNN ..................................... TGTTTTATCCGAGCGGTGCGCCCGGGTCAAAAGG 2099499 37 100.0 34 NNNNNNNNNN ..................................... GGTACTCGAAATCATTGATAGTCGTAGTGTTTGG 2099570 37 100.0 38 NNNNNNNNNN ..................................... CAGAATTGAATGAACAGATTGCAGAACTCGAAGCAAAA 2099645 37 100.0 34 NNNNNNNNNN ..................................... CCAGAATATAGTATTATGCATTTGTAGCCGGTGA 2099716 37 100.0 35 NNNNNNNNNN ..................................... CATCGAGAAGGACGGCGGGTTGCTCGTCAAGGGTG 2099788 37 100.0 39 NNNNNNNNNN ..................................... TTTACAGTATTGCGGGTGTATTATTCATCTGCACGATTT 2099864 37 100.0 35 NNNNNNNNNN ..................................... AGACGAAATGGAAAAAAAGAAATTGACGCACTGCG 2099936 37 100.0 36 NNNNNNNNNN ..................................... GTACATATTAATCATCTCAGACCATGTTCCTTATCA 2100009 37 100.0 36 NNNNNNNNNN ..................................... TCGTCTGGCTTACGCTCTTTCTTTTCAGCCATCTTT 2100082 37 100.0 37 NNNNNNNNNN ..................................... AGGGTATGATACCTTACAACAATCTTTTTGTGAGGTG 2100156 37 100.0 34 NNNNNNNNNN ..................................... GTCCACCTGGTAAGCGGTATTTTAGTGGTTTTTG 2100227 37 100.0 36 NNNNNNNNNN ..................................... TGCGGCAAGGTCTATGTTGAAATGAAATTCGTTGTT 2100300 37 100.0 34 NNNNNNNNNN ..................................... GTAATGGTTCCAAATTCCGATCTGGTGTTATCAA 2100371 37 100.0 37 NNNNNNNNNN ..................................... GGAAAGCGTCACATCGTCCACTACCGCAGATCCGGCG 2100445 37 100.0 35 NNNNNNNNNN ..................................... TACGGAAATTCTGCGACATTTTCCCACCGTCGGGA 2100517 37 100.0 36 NNNNNNNNNN ..................................... CGTGTGGGTTGTCGAGGGGTGATACCGTGGTTTTCA 2100590 37 100.0 35 NNNNNNNNNN ..................................... GGGGATCAATGGAGACTATACTATACCGGAAATGA 2100662 37 100.0 34 NNNNNNNNNN ..................................... ATACACCGGCTGGTTATGGCACGGGCGCATGGTG 2100733 37 100.0 35 NNNNNNNNNN ..................................... TTTAATGTCTGTTGAACCAACATCGGAACCAACAG 2100805 37 100.0 34 NNNNNNNNNN ..................................... GGAATGAACACAGAGAGTGTTTCATCAATGTGGA 2100876 37 100.0 34 NNNNNNNNNN ..................................... TCTGGCATAACCGCTTGATACTCTTCATAGAGTT 2100947 37 100.0 36 NNNNNNNNNN ..................................... ATGATTGTAGGATCGAAGGCGAAGAAGAAGATGAAT 2101020 37 100.0 35 NNNNNNNNNN ..................................... TGCTTCTTTTCTTGTGTAGAACACTTTTCCTATGA 2101092 37 100.0 36 NNNNNNNNNN ..................................... GTGAAACCATGTTAGCACCCGATACAATCAAACGAA 2101165 37 100.0 39 NNNNNNNNNN ..................................... CAAGCTTTGCTACAATCTAATGTTGTCTTGGGGTATATT 2101241 37 100.0 36 NNNNNNNNNN ..................................... GTGAAACCATGTTAGCACCCGATACAATCAAACGAA 2101314 37 100.0 35 NNNNNNNNNN ..................................... CCGTTCCTGTTCTCTTAAGAGGGGAGGGGAGGGGG 2101386 37 100.0 34 NNNNNNNNNN ..................................... TGACAATCGGTTGGGTATATCCATCATTCCTGAT 2101457 37 100.0 35 NNNNNNNNNN ..................................... TGTGGGGTCCCAATCGGGCCCTTCTTTCGTCCACG 2101529 37 100.0 37 NNNNNNNNNN ..................................... CCAGCCGGAGGCGATCATGGCTCCGTTGATCGCACCA 2101603 37 100.0 37 NNNNNNNNNN ..................................... AAACGCCCGGAACGGTCAAGGCGCCCGTTAAGAAAAA 2101677 37 100.0 36 NNNNNNNNNN ..................................... CATACTTACCGCGGGGGAACGAGGCACATTCCTGGA 2101750 37 100.0 34 NNNNNNNNNN ..................................... AAGTAGTTCTCGGATCTCCACATCTCGTAAGTTT 2101821 37 100.0 35 NNNNNNNNNN ..................................... TATTTCTTAATTAATAATATACAATTAGGCTCAAA 2101893 37 100.0 34 NNNNNNNNNN ..................................... TGAATATTTCTTTTCAGGCAGTCTTTACCATTTT 2101964 37 100.0 35 NNNNNNNNNN ..................................... GGAACGGGTGTTCCTGTAGTAGTTGGAATAGGTGT 2102036 37 100.0 35 NNNNNNNNNN ..................................... GTATTGCGGGAAACTGATCACGGCCCGGGATGAAT 2102108 37 100.0 36 NNNNNNNNNN ..................................... CTCTCTTCCGGAGTACTTGCATAACATAACATAACA 2102181 37 100.0 34 NNNNNNNNNN ..................................... CCGGAACTCTTTCATGTACGGCAGATAATCACGG 2102252 37 100.0 34 NNNNNNNNNN ..................................... AAGTCGAAGAATTTAAGATACTGTCACATGATTG 2102323 37 100.0 34 NNNNNNNNNN ..................................... GCATCTCCTCAAAAATCCTCTACGCGTGGAGAGG 2102394 37 100.0 37 NNNNNNNNNN ..................................... GCAAAGTGCGCGGAATTTTGCATGCGGTTTGTCAAGG 2102468 37 100.0 38 NNNNNNNNNN ..................................... GTATTAGGGGATGCATGGCACAACCAGTTTAATCCGCA 2102543 37 100.0 34 NNNNNNNNNN ..................................... TCATATCAATGTCATATTGGTATGCCCGGTGGTG 2102614 37 100.0 35 NNNNNNNNNN ..................................... TATCAGGTTTTCTGTTGCTTGTGTGGCATGGCCCT 2102686 37 100.0 35 NNNNNNNNNN ..................................... TGGACTGGTCACGACACCGCATTCACATTCCAATA 2102758 37 100.0 36 NNNNNNNNNN ..................................... CCAACAGGTCAGTTCTACAACCATGCGTTATCATAG 2102831 37 100.0 36 NNNNNNNNNN ..................................... TTATCCTACCAGTGACCACGGAACCCGAGATATGGA 2102904 37 100.0 35 NNNNNNNNNN ..................................... CAGGTGGTAGTTGAACGACCCTTATACCTGATCGA 2102976 37 100.0 34 NNNNNNNNNN ..................................... ACTGATCACGGGACGATCTATTACGAGCGGAGAG 2103047 37 100.0 38 NNNNNNNNNN ..................................... CCAGTACAAAGGATACCCTGGTGGATACGCTTGGCTGA 2103122 37 100.0 36 NNNNNNNNNN ..................................... GTACTTCTGCACCGTCACACTGGATCGGGCGCTGGA 2103195 37 100.0 35 NNNNNNNNNN ..................................... GATACCACATTTTAGATCGAACTAATACTTTCTTC 2103267 37 100.0 34 NNNNNNNNNN ..................................... TGTTGAGAATCCATCGTCACCGAATGACCAATTG 2103338 37 100.0 35 NNNNNNNNNN ..................................... TTCGCCCGGGACAACACCGGCAAGCCTGGTGGATG 2103410 37 100.0 37 NNNNNNNNNN ..................................... GGTGGAGTATATACCTGGACAGAGATTGGCAGCCCAT 2103484 37 100.0 38 NNNNNNNNNN ..................................... CCAGACCCAGATATTCGGATCTCCTGATGAGGTATCAG 2103559 37 100.0 36 NNNNNNNNNN ..................................... TGGAGCCTACAAGTCCACTTCGCACACCTGAGCAGA 2103632 37 100.0 35 NNNNNNNNNN ..................................... AAGTCTGCTATTCCATTACCATTGGCAGCATATAT 2103704 37 100.0 35 NNNNNNNNNN ..................................... AATAGTCTCTAATGAGAAGTAACTAAAATCAAAGA 2103776 37 100.0 1 NNNNNNNNNN ..................................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 73 37 35 GTTTCAATCCTTGTTCTCGTGGATGTTTCGCTCGAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.05%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.40,-2.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [81,107] Score: 0/0.18 # # Final direction: R [0.37,4.91 Confidence: HIGH] >NC_019943 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2098628 37 97.3 34 GTACATCATA -.................................... AAAAAACAGGGGTGGATCAACCTCATGAATCGGG 2098699 37 100.0 35 ATGAATCGGG ..................................... GACATTTACCCAATGGCTGATTGGCAGTTAGCGAT 2098771 37 100.0 39 AGTTAGCGAT ..................................... TATTTACGGCGTTCTGTTCAATCTTAACCGCCGGATAGG 2098847 37 100.0 37 GCCGGATAGG ..................................... GTTACGGGGGAGAAGGGACTGCATTGCGGTCTTACAT 2098921 37 100.0 35 GGTCTTACAT ..................................... ACCGAGCAGGGCAAACGCTCGCTGGCGGTTCTTGA 2098993 37 100.0 38 CGGTTCTTGA ..................................... CAGGGGTAACTTTGCTGGGTTCAAGCAGGTGTGTCCGA 2099068 37 100.0 35 GTGTGTCCGA ..................................... TCCTATAACATCGCACGCAACAGTGGTCTTTCGGG 2099140 37 100.0 35 GTCTTTCGGG ..................................... CAAGAGGCGGAAAACAAACACCTCACGGTTGACGG 2099212 37 100.0 36 CGGTTGACGG ..................................... GGAATTATCTTGTATTCAGTCATTCGCACGATGGCT 2099285 37 100.0 35 CACGATGGCT ..................................... CCTATAGGTAATATAGGTAATTGTCGCCCGGCTTG 2099357 37 100.0 35 GCCCGGCTTG ..................................... AAACTCTCATTTTGGGCTTCTTTTCCAAGTGGTTT 2099429 37 100.0 34 CAAGTGGTTT ..................................... TGTTTTATCCGAGCGGTGCGCCCGGGTCAAAAGG 2099500 37 100.0 34 GGTCAAAAGG ..................................... GGTACTCGAAATCATTGATAGTCGTAGTGTTTGG 2099571 37 100.0 38 TAGTGTTTGG ..................................... CAGAATTGAATGAACAGATTGCAGAACTCGAAGCAAAA 2099646 37 100.0 34 CGAAGCAAAA ..................................... CCAGAATATAGTATTATGCATTTGTAGCCGGTGA 2099717 37 100.0 35 TAGCCGGTGA ..................................... CATCGAGAAGGACGGCGGGTTGCTCGTCAAGGGTG 2099789 37 100.0 39 GTCAAGGGTG ..................................... TTTACAGTATTGCGGGTGTATTATTCATCTGCACGATTT 2099865 37 100.0 35 TGCACGATTT ..................................... AGACGAAATGGAAAAAAAGAAATTGACGCACTGCG 2099937 37 100.0 36 ACGCACTGCG ..................................... GTACATATTAATCATCTCAGACCATGTTCCTTATCA 2100010 37 100.0 36 TTCCTTATCA ..................................... TCGTCTGGCTTACGCTCTTTCTTTTCAGCCATCTTT 2100083 37 100.0 37 AGCCATCTTT ..................................... AGGGTATGATACCTTACAACAATCTTTTTGTGAGGTG 2100157 37 100.0 34 TTGTGAGGTG ..................................... GTCCACCTGGTAAGCGGTATTTTAGTGGTTTTTG 2100228 37 100.0 36 GTGGTTTTTG ..................................... TGCGGCAAGGTCTATGTTGAAATGAAATTCGTTGTT 2100301 37 100.0 34 ATTCGTTGTT ..................................... GTAATGGTTCCAAATTCCGATCTGGTGTTATCAA 2100372 37 100.0 37 GTGTTATCAA ..................................... GGAAAGCGTCACATCGTCCACTACCGCAGATCCGGCG 2100446 37 100.0 35 AGATCCGGCG ..................................... TACGGAAATTCTGCGACATTTTCCCACCGTCGGGA 2100518 37 100.0 36 ACCGTCGGGA ..................................... CGTGTGGGTTGTCGAGGGGTGATACCGTGGTTTTCA 2100591 37 100.0 35 GTGGTTTTCA ..................................... GGGGATCAATGGAGACTATACTATACCGGAAATGA 2100663 37 100.0 34 CCGGAAATGA ..................................... ATACACCGGCTGGTTATGGCACGGGCGCATGGTG 2100734 37 100.0 35 GCGCATGGTG ..................................... TTTAATGTCTGTTGAACCAACATCGGAACCAACAG 2100806 37 100.0 34 GAACCAACAG ..................................... GGAATGAACACAGAGAGTGTTTCATCAATGTGGA 2100877 37 100.0 34 TCAATGTGGA ..................................... TCTGGCATAACCGCTTGATACTCTTCATAGAGTT 2100948 37 100.0 36 TCATAGAGTT ..................................... ATGATTGTAGGATCGAAGGCGAAGAAGAAGATGAAT 2101021 37 100.0 35 GAAGATGAAT ..................................... TGCTTCTTTTCTTGTGTAGAACACTTTTCCTATGA 2101093 37 100.0 36 TTTCCTATGA ..................................... GTGAAACCATGTTAGCACCCGATACAATCAAACGAA 2101166 37 100.0 39 ATCAAACGAA ..................................... CAAGCTTTGCTACAATCTAATGTTGTCTTGGGGTATATT 2101242 37 100.0 36 GGGGTATATT ..................................... GTGAAACCATGTTAGCACCCGATACAATCAAACGAA 2101315 37 100.0 35 ATCAAACGAA ..................................... CCGTTCCTGTTCTCTTAAGAGGGGAGGGGAGGGGG 2101387 37 100.0 34 GGGGAGGGGG ..................................... TGACAATCGGTTGGGTATATCCATCATTCCTGAT 2101458 37 100.0 35 CATTCCTGAT ..................................... TGTGGGGTCCCAATCGGGCCCTTCTTTCGTCCACG 2101530 37 100.0 37 TTCGTCCACG ..................................... CCAGCCGGAGGCGATCATGGCTCCGTTGATCGCACCA 2101604 37 100.0 37 GATCGCACCA ..................................... AAACGCCCGGAACGGTCAAGGCGCCCGTTAAGAAAAA 2101678 37 100.0 36 TTAAGAAAAA ..................................... CATACTTACCGCGGGGGAACGAGGCACATTCCTGGA 2101751 37 100.0 34 CATTCCTGGA ..................................... AAGTAGTTCTCGGATCTCCACATCTCGTAAGTTT 2101822 37 100.0 35 TCGTAAGTTT ..................................... TATTTCTTAATTAATAATATACAATTAGGCTCAAA 2101894 37 100.0 34 TAGGCTCAAA ..................................... TGAATATTTCTTTTCAGGCAGTCTTTACCATTTT 2101965 37 100.0 35 TTACCATTTT ..................................... GGAACGGGTGTTCCTGTAGTAGTTGGAATAGGTGT 2102037 37 100.0 35 GAATAGGTGT ..................................... GTATTGCGGGAAACTGATCACGGCCCGGGATGAAT 2102109 37 100.0 36 CGGGATGAAT ..................................... CTCTCTTCCGGAGTACTTGCATAACATAACATAACA 2102182 37 100.0 34 TAACATAACA ..................................... CCGGAACTCTTTCATGTACGGCAGATAATCACGG 2102253 37 100.0 34 ATAATCACGG ..................................... AAGTCGAAGAATTTAAGATACTGTCACATGATTG 2102324 37 100.0 34 CACATGATTG ..................................... GCATCTCCTCAAAAATCCTCTACGCGTGGAGAGG 2102395 37 100.0 37 CGTGGAGAGG ..................................... GCAAAGTGCGCGGAATTTTGCATGCGGTTTGTCAAGG 2102469 37 100.0 38 TTTGTCAAGG ..................................... GTATTAGGGGATGCATGGCACAACCAGTTTAATCCGCA 2102544 37 100.0 34 TTAATCCGCA ..................................... TCATATCAATGTCATATTGGTATGCCCGGTGGTG 2102615 37 100.0 35 CCCGGTGGTG ..................................... TATCAGGTTTTCTGTTGCTTGTGTGGCATGGCCCT 2102687 37 100.0 35 GCATGGCCCT ..................................... TGGACTGGTCACGACACCGCATTCACATTCCAATA 2102759 37 100.0 36 CATTCCAATA ..................................... CCAACAGGTCAGTTCTACAACCATGCGTTATCATAG 2102832 37 100.0 36 GTTATCATAG ..................................... TTATCCTACCAGTGACCACGGAACCCGAGATATGGA 2102905 37 100.0 35 GAGATATGGA ..................................... CAGGTGGTAGTTGAACGACCCTTATACCTGATCGA 2102977 37 100.0 34 ACCTGATCGA ..................................... ACTGATCACGGGACGATCTATTACGAGCGGAGAG 2103048 37 100.0 38 GAGCGGAGAG ..................................... CCAGTACAAAGGATACCCTGGTGGATACGCTTGGCTGA 2103123 37 100.0 36 GCTTGGCTGA ..................................... GTACTTCTGCACCGTCACACTGGATCGGGCGCTGGA 2103196 37 100.0 35 GGGCGCTGGA ..................................... GATACCACATTTTAGATCGAACTAATACTTTCTTC 2103268 37 100.0 34 TACTTTCTTC ..................................... TGTTGAGAATCCATCGTCACCGAATGACCAATTG 2103339 37 100.0 35 TGACCAATTG ..................................... TTCGCCCGGGACAACACCGGCAAGCCTGGTGGATG 2103411 37 100.0 37 CTGGTGGATG ..................................... GGTGGAGTATATACCTGGACAGAGATTGGCAGCCCAT 2103485 37 100.0 38 GGCAGCCCAT ..................................... CCAGACCCAGATATTCGGATCTCCTGATGAGGTATCAG 2103560 37 100.0 36 GAGGTATCAG ..................................... TGGAGCCTACAAGTCCACTTCGCACACCTGAGCAGA 2103633 37 100.0 35 CCTGAGCAGA ..................................... AAGTCTGCTATTCCATTACCATTGGCAGCATATAT 2103705 37 100.0 35 CAGCATATAT ..................................... AATAGTCTCTAATGAGAAGTAACTAAAATCAAAGA 2103777 37 100.0 AAATCAAAGA ..................................... GCCGCGAAAT ========== ====== ====== ====== ========== ===================================== 72 37 35 GTTTCAATCCTTGTTCTCGTGGATGTTTCGCTCGAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.05%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-3.40,-2.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [154,106] Score: 0/0.18 # # Final direction: R [0.37,4.91 Confidence: HIGH] >NC_019943 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 2643784 32 87.5 35 GTTGATCAAC .......T......C..T..T........... CACGCGATCAGGTAATTCATAATCGGCCCGATAAT 2643851 32 96.9 33 GCCCGATAAT .......T........................ TTATGGCGGTCGTTCATGTGACGAGTGCCGAAG 2643916 32 100.0 34 AGTGCCGAAG ................................ TATTTTTTCAAATCTGTTGCGTGTAGATCCGGGG 2643982 32 100.0 33 AGATCCGGGG ................................ TCGATTCTCGGGGCATGGTCAGGGAAGTGGGGA 2644047 32 100.0 33 GAAGTGGGGA ................................ TTCACCGATCCGCCATACGTCAAGGAGCTCTAT 2644112 32 100.0 34 GGAGCTCTAT ................................ CACCGTCCTTCTCTCCCATCACGACAAGCGCCTG 2644178 32 100.0 34 CAAGCGCCTG ................................ TCCGGAATACAGCACAGTGCCCCCGGTACTATCC 2644244 32 100.0 32 GGTACTATCC ................................ TAGGAGATGACCCTAGAATATGGGCTTTTGAT 2644308 32 100.0 35 GGCTTTTGAT ................................ TTCAGGAGTCGTTCCCGTACCGGCAGGTTTGTTCA 2644375 32 100.0 34 GGTTTGTTCA ................................ TGTCGAGCCACGACCGGACCAACAGGTAACCCGT 2644441 32 100.0 33 GGTAACCCGT ................................ TTGCATCGCCCTTTGTTTCAATGGCGATGGAAT 2644506 32 100.0 33 GCGATGGAAT ................................ GCTATTCGTGAACCACCTTTTATTGATGGACCA 2644571 32 100.0 33 TGATGGACCA ................................ TGCCCCGCTCGTCAATGACCATCCCGTTGGAAA 2644636 32 100.0 34 CCGTTGGAAA ................................ TCCTGGTTTGACCGCAGTTTATCGTATTCTGGAA 2644702 32 100.0 34 TATTCTGGAA ................................ TGCAAATGGCAGAGTATACCGAAAGATCGATGCA 2644768 32 100.0 33 GATCGATGCA ................................ TTCTTTCAAGCAGGGGATTTTATGGAGCTCTGT 2644833 32 100.0 34 GGAGCTCTGT ................................ TCAGCATGTCGGGGAGTTCCAGTTCAACCTCATA 2644899 32 100.0 35 CAACCTCATA ................................ CTTTCGCTTCCGTGGATCTCAACTTCCCGAGGCAT 2644966 32 100.0 34 CCCGAGGCAT ................................ GAAAAAATGTGTATGTGCATAATGGGTACTCTGT 2645032 32 100.0 36 GGTACTCTGT ................................ CGCCTTTGTGTACATCGCGAACCCGAAAGAATCATG 2645100 32 100.0 34 AAGAATCATG ................................ TATTTTTTAACCTTCACCGTTACGCGATCGCGGA 2645166 32 100.0 35 CGATCGCGGA ................................ ATTTTCAGGAGATGAAAGTACATGGTTAACGTAAA 2645233 32 100.0 34 TTAACGTAAA ................................ AGATATAGATAATAAATCTGCACAATGAATTAAA 2645299 32 100.0 33 ATGAATTAAA ................................ TCATCAATCATAATATCACCCAAACATATTACA 2645364 32 100.0 32 ACATATTACA ................................ CCTTCGACGGGATGCAGTCCGGTGTCGTGTAT 2645428 32 100.0 33 TGTCGTGTAT ................................ GGATCAACCTTTCCCCCGCAAAGCCTGCAGCGG 2645493 32 100.0 34 CCTGCAGCGG ................................ TTTTGATCACAGAGATATTTTTTAGACATCTGGA 2645559 32 100.0 33 GACATCTGGA ................................ TTCGTATGGTGGGGATGGCTTGTCATGCCGATA 2645624 32 100.0 34 CATGCCGATA ................................ CCCCATCGCAGTTTTCATCCCGGTCGCAAACTCT 2645690 32 100.0 33 CGCAAACTCT ................................ TCAGATGGACCGCCCCCTCCAATTGACGTAATA 2645755 32 100.0 33 TGACGTAATA ................................ GCATTACCCGCCCCGGAGAGGTTCGAGCTCGAT 2645820 32 100.0 35 CGAGCTCGAT ................................ AGGTCCGGCCCCATCGTCCGGGCCGCATTCGTCCG 2645887 32 100.0 33 CATTCGTCCG ................................ GTTTCAGATCCCAGATCCGTTCATAGACTTTCG 2645952 32 100.0 34 TAGACTTTCG ................................ GGATTGCTGCGAAGGGTGCCTTGAAAGAGTGCAG 2646018 32 100.0 33 AAGAGTGCAG ................................ GCCGTACGTGCCCGCCATGTACATCAGGAGCTT 2646083 32 100.0 34 TCAGGAGCTT ................................ TATGCGTCCCTGATCTTTTTCTTGTATCCTCCCT 2646149 32 100.0 34 TATCCTCCCT ................................ CGCTTTCCTCGGTGGAATGCGGAAAAGGATGTGT 2646215 32 100.0 33 AAGGATGTGT ................................ TCCACATATTGTCTGGTGTACTCATGGGAGATT 2646280 32 100.0 34 ATGGGAGATT ................................ CCATTTTGCACACCTGTCTTTTGTTCGTCGATCA 2646346 32 100.0 34 TCGTCGATCA ................................ TTTGCCAGCACCCGGGCCACGTCTGCATCTCGCA 2646412 32 100.0 34 GCATCTCGCA ................................ TTGGCATTACTCCCGATTCAAATAACATTATCAA 2646478 32 100.0 33 ACATTATCAA ................................ CTGCAATGTTTCAAAGGTTGTTAGCCTTATGCA 2646543 32 100.0 34 GCCTTATGCA ................................ ATTGCGCTTTGCATCTCCCTGTATGCTACACTTT 2646609 32 100.0 32 GCTACACTTT ................................ TTAACGGTTTAGTAGATGCAACGCTATCTGTA 2646673 32 100.0 36 GCTATCTGTA ................................ CTTTTTACTGGTTGTCATGACAATCTTTGTAATCAG 2646741 32 100.0 32 TTGTAATCAG ................................ TTAAATATGTTGTACTAGAATCAATCTCTATA 2646805 32 100.0 35 AATCTCTATA ................................ CAGTGTTTCAAAGCTCTGGATCGTGCCGTGGAAGA 2646872 32 100.0 33 CCGTGGAAGA ................................ CTGCAATGTTTCAAAGGTTGTTAGCCTTACGCA 2646937 32 100.0 35 GCCTTACGCA ................................ GTTACCATTCTTTTTCATCTCCTGCTCTAATATAA 2647004 32 100.0 34 TCTAATATAA ................................ TTGCGATCATGCAGATTAACGCCTGCGCTGCAAT 2647070 32 100.0 35 GCGCTGCAAT ................................ TGAAGTGGTGGATGGATTCCACCGGACCCGCGTTG 2647137 32 100.0 32 ACCCGCGTTG ................................ ATGGTGACGGCATTTATTGCACCATTCACGGT 2647201 32 100.0 38 CATTCACGGT ................................ TTCCGGGGAATCGCGGATGCCTTTGCGGATCAATGGGG 2647271 32 100.0 34 ATCAATGGGG ................................ TAATACAAAACCACTTCATTATCTGTCTAAAATT 2647337 32 100.0 36 GTCTAAAATT ................................ TCGGTGGTCTGTTGACCGGATCAAGGATGGTAAGCG 2647405 32 100.0 33 ATGGTAAGCG ................................ GTCTCTTTTGTTGACCGTATATCTACCACAAAA 2647470 32 100.0 36 TACCACAAAA ................................ CGGGACCACCAGCGTTGCATCGCGCCGGTAATCAAA 2647538 32 100.0 34 GGTAATCAAA ................................ GCTCCGAGATCGCGTTGCTGATCGTGGAGATGCT 2647604 32 100.0 37 TGGAGATGCT ................................ GAAAAGGAGGGAGAGGAGGAAGCGGCAGAAACAGAGT 2647673 32 100.0 34 GAAACAGAGT ................................ TCACTCCTGCACAGCAGGCGTTGGTTATCGAACT 2647739 32 100.0 33 TTATCGAACT ................................ TTAGATGGGCAATTGTATTCACCCGTTCCGGAT 2647804 32 100.0 34 CGTTCCGGAT ................................ GCGTTCCTGAAGACGGGGCCGCATGTCCTGACGG 2647870 32 100.0 34 GTCCTGACGG ................................ GGGGATCCTTGAGCGACTCGCTCCGACCTTGATA 2647936 32 100.0 34 GACCTTGATA ................................ TCCCTTGATAGGGTGCGAGTGGACCGGGTTGTAT 2648002 32 100.0 32 CGGGTTGTAT ................................ TACTATTGCAAGTATCCGTTTTACATCCATGA 2648066 32 100.0 35 ACATCCATGA ................................ TTGATGAGCTCGGGATGTGATCTGGATGTTCATCG 2648133 32 100.0 34 ATGTTCATCG ................................ GTAAAGTTTACTGTTTACGCGCAATCCCATTAAG 2648199 32 100.0 33 TCCCATTAAG ................................ TATTACGCTGAATACAGGGATTGGAGGGCAAAG 2648264 32 100.0 33 GAGGGCAAAG ................................ TTAGGTTCTAAATTTGTTGCTGTATAATTTCCA 2648329 32 100.0 33 ATAATTTCCA ................................ TTTATCTATCGGTTAAATGGTGTGCAACATGGT 2648394 32 100.0 34 GCAACATGGT ................................ TTTTACGTTTCCCTGGTTTTTAACCCTTAAATTT 2648460 32 100.0 CCTTAAATTT ................................ TGTAAAATAC ========== ====== ====== ====== ========== ================================ 72 32 33 ATTTCAACCCACACTCCCGCGAAGGGAGTGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [9,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.60,-6.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [362,232] Score: 0/0.18 # # Final direction: R [0.37,1.05 Confidence: MEDIUM] >NC_019949 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 948179 36 97.2 30 GGGATAGTCT ............T....................... TTTGATGCTTCATTTATTCAGCTAGAATAT 948245 36 97.2 30 GCTAGAATAT ............T....................... TTGATGATGAAGAAATTTTAACAGCAGAAA 948311 36 100.0 30 ACAGCAGAAA .................................... TAAGTGGTGTTGTTTGACCTTTAATTTTTA 948377 36 100.0 30 TTAATTTTTA .................................... AAAGTTAGAATAGACTTCCCTTTACCTGAA 948443 36 100.0 30 TTTACCTGAA .................................... ACCTTTTTACCCATAAAATTCATTATTATG 948509 36 100.0 30 CATTATTATG .................................... TATTATGTTACAAGTTTGATTATATAAGTC 948575 36 100.0 30 TATATAAGTC .................................... AACTGGAAGTAACACCTGGAATATAAGTAG 948641 36 100.0 30 ATATAAGTAG .................................... ACCTTTTTACCCATAAAAGACATTATTATG 948707 36 100.0 30 CATTATTATG .................................... AATATAATTTTTGCTTTTGATGTAGTTCAT 948773 36 100.0 30 TGTAGTTCAT .................................... AAGGGTTTAAATATTCAAAAATTTGACTAT 948839 36 100.0 30 ATTTGACTAT .................................... AAAATATCCTTATCGATGTTTTTAATGTTT 948905 36 100.0 30 TTTAATGTTT .................................... AAAATGTTTTTATCTATGTCTTTAATGTTT 948971 36 100.0 30 TTTAATGTTT .................................... TTCATCGCTAGAATTGTAAGCAATTCTCAA 949037 36 100.0 30 CAATTCTCAA .................................... TCTCTTTAATGTTTAATGCTATACACTTAA 949103 36 100.0 30 ATACACTTAA .................................... AATTATGTTGCATGTTTGATTGTATAGGTC 949169 36 100.0 30 TGTATAGGTC .................................... TTTCGTCACTAGAATTGAAAGCGATTCTTA 949235 36 100.0 30 GCGATTCTTA .................................... ACTCTTTTACCCATAAAGTTCATTAATATG 949301 36 100.0 30 CATTAATATG .................................... TTGTGATTGAAAATAATTATTATTATAATG 949367 36 100.0 TATTATAATG .................................... CTCATTACTT ========== ====== ====== ====== ========== ==================================== 19 36 30 GTTATTGTTTACCCAAATATTGTACAACACTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.22%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-1.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [76.7-80.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [188,17] Score: 0.18/0.18 # # Final direction: R [0.18,0.37 Confidence: MEDIUM] >NC_019950 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3145998 36 100.0 39 NNNNNNNNNN CC.CAAC.G.GAAGAGCC.................. AGACACAAACCCGCGCACCGGCAGAAGCCCACTACCAGA 3146073 36 100.0 36 NNNNNNNNNN .................................... TGATGGTGATTCGGTGGTCCTCACCTATCACGGAGA 3146145 36 100.0 40 NNNNNNNNNN .................................... TTGACAGACGCGTGCTTAGCCGACGCGCGCTTGTTCGATG 3146221 36 100.0 35 NNNNNNNNNN .................................... GTGGGCCAGACAATCCGGCCGACGCTACCCTTCTG 3146292 36 100.0 45 NNNNNNNNNN .................................... TCTGACGACTTGCCGCCACCGACACCGATCAGGCCGTGTCGTGAT 3146373 36 100.0 35 NNNNNNNNNN .................................... CTGCGGGCTCGTCATGACCGGATCGCCGCGCAGAA 3146444 36 100.0 39 NNNNNNNNNN .................................... GTACAGGAGAACACCGAACACCACTTCGACCTCTGGATG 3146519 36 100.0 39 NNNNNNNNNN .................................... GACACGCCAACGCGCCGCCGTCGCCGGGCAACAACCAGT 3146594 36 100.0 37 NNNNNNNNNN .................................... CACTGGGACAAGAAAACTGAAACCCGTTGAAACACAC 3146667 36 100.0 40 NNNNNNNNNN .................................... CTCGGCTGGAAAAAGGCGCGCGACAACCGCATTGTCAAGC 3146743 36 100.0 37 NNNNNNNNNN .................................... TTGAATTGATCACAGTCCAAACATTTGGCGTCAACTA 3146816 36 100.0 39 NNNNNNNNNN .................................... CTGTTAGGCATAAGCACACCAGCACCTCCCTTGGCAAGG 3146891 36 100.0 36 NNNNNNNNNN .................................... ATTAGGCGACTACGAACACACGCCCCAGCCCGGGGA 3146963 36 100.0 31 NNNNNNNNNN .................................... GTGAACGAAACCCGCGGCGGCACAATCGAAG 3147030 36 100.0 38 NNNNNNNNNN .................................... CCGCACTCTACTGCCGCACAGCTCGCTATGTACGCCAA 3147104 36 100.0 39 NNNNNNNNNN .................................... GCTACGCGACCACCACATCCGCAACCGCGCCGCCATCGA 3147179 36 100.0 38 NNNNNNNNNN .................................... TTTTTTACCCGGATACAGGCGAAACCGTCCATGCTGCT 3147253 36 100.0 41 NNNNNNNNNN .................................... TGAAAGACCAGCCCACATGGCCCAATACAGCGTCGTTGAAG 3147330 36 100.0 36 NNNNNNNNNN .................................... GGTTGCTGGATTCGCCCGTCGCTGCAATTTACTGAA 3147402 36 100.0 33 NNNNNNNNNN .................................... TCGCCTTCGCCTGATCAGGCGTAATCGCCACAT 3147471 36 100.0 36 NNNNNNNNNN .................................... TTCTGAGCCGTGGACCTCGACGCGTAGACCTTGTTG 3147543 36 100.0 39 NNNNNNNNNN .................................... ACAGAGGTCTACGCTTCGCATCCATGGGGTCAGCACCGA 3147618 36 100.0 39 NNNNNNNNNN .................................... CCGAGTTGGCCGCGGCCTAGTGGCCGCATCGAGCACCGC 3147693 36 100.0 38 NNNNNNNNNN .................................... ATCGCGGTCAACGGCGTCAAGTCATGGAAGATCACCAA 3147767 36 100.0 35 NNNNNNNNNN .................................... TTCTCGGCGCCGCCGGGGCCGCTACCAGCGGGCAT 3147838 36 100.0 37 NNNNNNNNNN .................................... AATACCACGCAGTCGACGAATGCAACGACACCTCCAA 3147911 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 27 36 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [30.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [94,50] Score: 0/0.18 # # Final direction: R [0,1.42 Confidence: HIGH] >NC_019951 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 2991430 37 94.6 36 GCGCGACTTG ...............C........A............ CCCCGGGCGCCAGGCGCTCATCGTGCGCGAGTACAT 2991503 37 97.3 36 GCGAGTACAT ........................A............ ATCCCACGACCATCGAGGTCGAGACGGAGCTGTCGG 2991576 37 97.3 36 GAGCTGTCGG ........................A............ CCGCGACGGTGGGAACCTTTTGCGAGACGTAGAGGG 2991649 37 94.6 37 ACGTAGAGGG ........................A.......A.... AAGGAGGCCCTGACTCTTCTTCCCACCTAAGGATAAC 2991723 37 97.3 35 TAAGGATAAC ........................A............ GCGCAGGTTGAGCAGGCGGTGGTGTCTGCGCAGGG 2991795 37 97.3 36 CTGCGCAGGG ........................A............ GTCTTTCGCCTTGGCCGCCCATCTCGGGCTTAGGCG 2991868 37 97.3 35 GGCTTAGGCG ........................A............ CGGTCTGTGCCGCCAGCCGGTCGTCGTCATCCTGG 2991940 37 94.6 37 GTCATCCTGG ........................A....C....... CCGCGACGGTGCTTGCACCCCAAAAGCTTTCGTCAAG 2992014 37 100.0 35 TTTCGTCAAG ..................................... ACGTCGACGTCACTGTATGGGTATGCGGCCGCAAT 2992086 37 100.0 37 CGGCCGCAAT ..................................... GGCCGATGGGCGGGATAGGCGCCCGCCCCAACAAAAA 2992160 37 100.0 35 CCAACAAAAA ..................................... TGTGTGTCCCGGTCGCAGGGCGCCATCGTCGATGT 2992232 37 100.0 34 TCGTCGATGT ..................................... GGCCGTCGGTCGGCACTACGAACGGTGGGATACC 2992303 37 100.0 36 GTGGGATACC ..................................... TCGCCAGTTCTACGCAAAAGCCGAGCAGTAGGTGAA 2992376 37 100.0 36 AGTAGGTGAA ..................................... CGGCGCGGCGGTAGAGAGTGCCATCACCCCACATAT 2992449 37 100.0 33 CCCCACATAT ..................................... ACCCAAAGGGCGCTTACCTTTTCCGAGCGTCCG 2992519 37 100.0 36 CGAGCGTCCG ..................................... CGTGCACCAGGACGGGCAGCCGCGTAATATTCCCCG 2992592 37 100.0 36 ATATTCCCCG ..................................... CATGTTGACTTGATATGTACCGTGCTCGGTTGGGGT 2992665 37 100.0 36 CGGTTGGGGT ..................................... CAACGCGCCCGTTAAATCGGTGGCCGCTAACAGCGT 2992738 37 100.0 36 CTAACAGCGT ..................................... CATTGATTGCGGTATTCGATCCCGTTTTGTATGCAC 2992811 37 100.0 38 TTGTATGCAC ..................................... CCCCAAGCCCGCTGCCGCGATAGATCCACCCGCAGCAG 2992886 37 100.0 36 CCCGCAGCAG ..................................... TGCCAGCAGCCATTTGCGCGCCCGGGTGTCTGAGAT 2992959 37 100.0 35 TGTCTGAGAT ..................................... ACCGCCGCGCCGACGGTATGTGGATAGGCGCAGTC 2993031 37 100.0 37 AGGCGCAGTC ..................................... CCGCCATGTTGAGTCAGGCTGCGAATGGCGGCGGTCT 2993105 37 100.0 36 GCGGCGGTCT ..................................... CGCAGCCCTGGGAGAGCGGTCCACCACCGCAGGGAC 2993178 37 100.0 35 CCGCAGGGAC ..................................... CATCAGCGCTGCACATCAAATGCGACCCCAATGAG 2993250 37 100.0 38 CCCCAATGAG ..................................... CCCGTCATCACGAACGCGCAGAGTGCGAATTCAGCAAA 2993325 37 100.0 37 ATTCAGCAAA ..................................... CCGCTGCACGAGGCGAGCATGCCAAAACTCGAAAAGC 2993399 37 100.0 34 CTCGAAAAGC ..................................... ATCATTACATTGCCCTCCTGCCTGACGGTATTGA 2993470 37 100.0 35 ACGGTATTGA ..................................... ATTGTCCCCGTGGAGTTGATAGACATCGACTTATC 2993542 37 100.0 37 TCGACTTATC ..................................... CATCAACGTATTCGCCGCCTTTTACGGCATATTCGGC 2993616 37 100.0 35 CATATTCGGC ..................................... AGTTCGCACTCAACCACATCTGGTGTGGTGTCACC 2993688 37 100.0 36 TGGTGTCACC ..................................... CCCAGCGCTATTCATGCTCAGATGGGCGGCCGAGGC 2993761 37 100.0 37 CGGCCGAGGC ..................................... CTGTCGGTCCAGTTGGCGTTTTCCAGTGGCCCGGGAT 2993835 37 100.0 35 GGCCCGGGAT ..................................... CCATCGCGCTAGCGCGTTTCATGGACGAGACGACC 2993907 37 100.0 34 CGAGACGACC ..................................... ACGGCATCAAAATCTATGTCCTTCAAATTCGAGC 2993978 37 100.0 35 AAATTCGAGC ..................................... TCCCGTTGGCGCTGCACATGATTGACATTCGGCCA 2994050 37 100.0 36 CATTCGGCCA ..................................... CACCTCAACGACCGCCCGCGTACAGGAGACCGACAA 2994123 37 100.0 36 AGACCGACAA ..................................... CGCAGAAGCCTAGCAGTAGGTGAAGAGATGTTGGCA 2994196 37 100.0 34 GATGTTGGCA ..................................... TTGCACGTGCTTTTTTTGGAGCTGCTCCTCGCCC 2994267 37 100.0 37 CTCCTCGCCC ..................................... TCCCCTCGCGCGGTGCGTGCCACCCGTTCTAATTCCC 2994341 37 100.0 36 TCTAATTCCC ..................................... CCCGACACCCCCGGCGCCGCCGGCGTCAACAAGATT 2994414 37 100.0 34 CAACAAGATT ..................................... AGCCGTGCTTGTTGGCGATGGTCTTGGGTGTGGG 2994485 37 100.0 36 TGGGTGTGGG ..................................... CGCCAACAAACCGACGACAACTGGACATGGCGCAAC 2994558 37 100.0 34 ATGGCGCAAC ..................................... CAGCGCTCGGCATCACAGTGTCGACAGCACCGTC 2994629 37 100.0 35 CAGCACCGTC ..................................... TGTCGTACCAGTCGGCTGGCGGCTTGCGCACTGAT 2994701 37 100.0 34 GCGCACTGAT ..................................... CCCGCACTGCTTCGCCAAGGACCAGCCGGCCCAG 2994772 37 100.0 36 GCCGGCCCAG ..................................... CCTGATGCCCGACTATAGCTTGGGTCGTGCACACGG 2994845 37 100.0 37 GTGCACACGG ..................................... CCGGCAGAACAACGCCGTCCACGAATGTGCGCTTGAC 2994919 37 100.0 37 TGCGCTTGAC ..................................... CCGGCTGGACTGGGTCGACATCACCATCGGCGACGTC 2994993 37 100.0 36 CGGCGACGTC ..................................... TGCTGCATGCCTGTCCGACCAAATGGCTATGGGACC 2995066 37 100.0 36 CTATGGGACC ..................................... GGCAGCTAACCGCCGAATTTCGGCTACTGTCTAGCC 2995139 37 100.0 35 CTGTCTAGCC ..................................... TGGTGAGTAGCTGGGCCTCATCACGCGAGAACTTT 2995211 37 100.0 37 CGAGAACTTT ..................................... GCGCAGGGGCTGGCATAATCCGTTCCGGCGCAAGAAA 2995285 37 100.0 GCGCAAGAAA ..................................... TCTTCACGAC ========== ====== ====== ====== ========== ===================================== 54 37 35 GTTCCGATCCTCAGCGGCGGGCAAGGCCCGCCGCTGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-14.20,-14.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [35.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [307,132] Score: 0.18/0.18 # # Final direction: R [0.18,1.42 Confidence: HIGH] >NC_019951 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3245847 36 100.0 36 CAGCCTTGAC .................................... CTGTCGGCCCACGGTAGGGCGGTCGGCGCCGACATC 3245919 36 100.0 36 CGCCGACATC .................................... CCGCACCGCCATTTTGTGATGAGCGACCACCGCGTT 3245991 36 91.7 39 CCACCGCGTT .................................--- GATGGGCGTGTTGGCATCCAGCCCAGCCTTTGTCGAGGT 3246066 36 100.0 36 TTGTCGAGGT .................................... TCGTGAGCTGCTGGCCCGTCTGCAGCGCCACTACAT 3246138 36 100.0 36 GCCACTACAT .................................... CTGCAAGACGCGCTCAATAGCGACACTATGCGTGCA 3246210 36 100.0 35 TATGCGTGCA .................................... CAGTTATGTGTAGCATTGTGGGGTGAAGAGGATTT 3246281 36 100.0 38 AAGAGGATTT .................................... CCGGGGCGGATCGCCTGCCTGCCGGTGCAGCTGCACCG 3246355 36 100.0 35 AGCTGCACCG .................................... CTTGTGTGTCGCCGATCGCGACGGCACCGGTGGGT 3246426 36 100.0 36 ACCGGTGGGT .................................... GGGCGACGACGAAACCCAGGCGGCCCGGGAGATCGC 3246498 36 100.0 36 GGGAGATCGC .................................... GTCCCGAACGAAGTTGGTGATACCAGCCGGGTTGGC 3246570 36 100.0 38 CCGGGTTGGC .................................... CTGGTGCACGTGGACGGTGGGGCCGTCCGCGTGATCAA 3246644 36 100.0 36 GCGTGATCAA .................................... GACCCGCACGCGTTGTGTGACCTCGCCGACATGATC 3246716 36 100.0 36 CGACATGATC .................................... TGCACTCACCGTGCTGAATCGCGGCCTGAAGAGCCT 3246788 36 100.0 35 TGAAGAGCCT .................................... GAGGTGCCGTTTGAGCAGTGGCGCACAAAAGAGGC 3246859 36 100.0 37 CAAAAGAGGC .................................... CCGCGCCGATTTGGGCGGCCAGCGCCGGGTTTCCCTG 3246932 36 100.0 36 GGTTTCCCTG .................................... GTAGCCGTTGGCCTGCAGCAGCGCCACCATGGTGCG 3247004 36 100.0 39 CCATGGTGCG .................................... GCGGTATCAGGTCGTTGAGTGCGTCGGTGACCGCCCCCC 3247079 36 100.0 36 ACCGCCCCCC .................................... CGTCCTGACGTTCACACAAGAAATTCCGCTACCGTC 3247151 36 100.0 38 CGCTACCGTC .................................... GCGGAAATGGTGATATGAGCCCCGCCCAGTTCGGCGGC 3247225 36 100.0 35 GTTCGGCGGC .................................... CCGCTGCGTTGGCGGAAACCGCGGCGCATCTTCGT 3247296 36 100.0 35 GCATCTTCGT .................................... CAGCAGGACGCCTGGTACCGTGATGGCCTGATCGC 3247367 36 100.0 35 GCCTGATCGC .................................... GCCAGATGCTCGGCGGGATATCGATTGACCGGCTG 3247438 36 100.0 36 TGACCGGCTG .................................... CGCCACCCATCCTCGGCGTCGCTCACCGTCGTCCGC 3247510 36 100.0 36 CGTCGTCCGC .................................... TTTACCGGGCCTGTTCGGGGCGGTCACCGACGCACT 3247582 36 100.0 34 CCGACGCACT .................................... ACCCTGGCCATACCCAGGAGCAACACGAGAAGAA 3247652 36 100.0 37 ACGAGAAGAA .................................... TTGAATGCCTGGCTGTTCACCCACCCTTGGGGAATTT 3247725 36 100.0 36 TGGGGAATTT .................................... AGAGGACTGGCGTGACGAAGCACTGTGCGCCCAAAC 3247797 36 100.0 37 GCGCCCAAAC .................................... ACCACGACCCGGCAGACGAACTGAACGCGATCGACCT 3247870 36 100.0 35 CGATCGACCT .................................... ACCTGCGCCACGAATTCTCCGATCGCCGTGGCCTG 3247941 36 100.0 36 CCGTGGCCTG .................................... CATGCTTCCGGCGTTGCGTCCGCTGGCCAACATCTT 3248013 36 100.0 34 CCAACATCTT .................................... TCGTATACCAGGAAACCCTAAACAACTTACTCAT 3248083 36 100.0 35 ACTTACTCAT .................................... CTGGGATGAGGCCGACGCCTGCTCAGCCAACGTCC 3248154 36 100.0 36 GCCAACGTCC .................................... CAGGATGTCTTCGAGGTCCTGAATCAGCGACTGCTT 3248226 36 100.0 36 GCGACTGCTT .................................... GTTGATCGCGTCGGTGATGAACTCGATCGCGTCACC 3248298 36 100.0 36 TCGCGTCACC .................................... TTGATCACACGCGAAAGGCTAGACATGGAAATACTG 3248370 36 100.0 37 GGAAATACTG .................................... CAGCGGCATAAATGTCACACCGCTCAGGCAACAGATC 3248443 36 100.0 35 GCAACAGATC .................................... CCGGCCACCTGTCCGACGGTCAGCTCATCACCGAC 3248514 36 100.0 35 CATCACCGAC .................................... TGTAGAGGGTCACTTCGTACGCCTGAACGGTCTCC 3248585 36 100.0 37 AACGGTCTCC .................................... CGGTTCAGTCACGGTGTGGATTACGGGATTTGGCTGG 3248658 36 100.0 36 ATTTGGCTGG .................................... CTTCGGCGCGCAGCGCGGCAACGCAGGTGTCGCAGC 3248730 36 100.0 35 GTGTCGCAGC .................................... CCCCGCGGCAGCAGAACCATCGTGTCCAGCGGATC 3248801 36 100.0 37 CCAGCGGATC .................................... CAAGCCATCCTCGACGCCCTGCACGCCAACCCCCGCC 3248874 36 100.0 37 AACCCCCGCC .................................... ATCAGCACCGACCGCGAAGCCACCCAACAACGCCAAC 3248947 36 100.0 35 CAACGCCAAC .................................... ATGCTTCCGGCGTTGCGTCCGCTGGCCAACACCTT 3249018 36 100.0 36 CCAACACCTT .................................... CAGGCGGCGGTGAACGCAAAGTGCCGTGCCCGCGCC 3249090 36 100.0 35 TGCCCGCGCC .................................... GCGCCGCATCATCGACAGTAACGGCGTAAATCATC 3249161 36 100.0 35 GTAAATCATC .................................... TCGAAAAGACAGTGGCCAGCCCCTGCCCGAGCAGC 3249232 36 100.0 37 CCCGAGCAGC .................................... CTACTGCCGCTATCCTGTACGGCGCGGAGCTGGGTTT 3249305 36 100.0 35 AGCTGGGTTT .................................... TGGAGGATGACGCTGCTCCCGTAGGCGGATTCCGC 3249376 36 100.0 35 CGGATTCCGC .................................... GAGGTGGCGTGTCCGGGCATAGCATCCTCCGAGCC 3249447 36 100.0 CCTCCGAGCC .................................... GGCTCTTCGA ========== ====== ====== ====== ========== ==================================== 51 36 36 CCCTCAATGGTGTCCGGCCAAAATGACCGGATTAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [10,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.40,-11.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1202,170] Score: 0.18/0.18 # # Final direction: R [0.55,1.05 Confidence: LOW] >NC_019952 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3211106 36 100.0 35 AGGCTTACCT .................................... ATGGTGTCGGCCATGTCCGCGCCTGCCCGCTTCCC 3211177 36 100.0 35 CCCGCTTCCC .................................... GCGGCGGCGGCCAAGGCGCCGATAAGGGCTTCCCG 3211248 36 97.2 35 GGGCTTCCCG ................A................... GAGTATCACGACATCACCACGCAGCCGTTTGGTGT 3211319 36 100.0 36 CGTTTGGTGT .................................... GCGCAAATCGACACCACCATCGACTTTACTGCTCTT 3211391 36 100.0 36 TACTGCTCTT .................................... GGGCGTGATCCAGCTTCCGGGCTACGCGTTCGACGG 3211463 36 100.0 35 CGTTCGACGG .................................... GAGTATCACGACATCACCACGCAGCCGTTTGGTGT 3211534 36 100.0 36 CGTTTGGTGT .................................... GCGACCTGTTCAGCGGTCATCCCGACATTCTCCGCC 3211606 36 100.0 35 ATTCTCCGCC .................................... GTTGGTTTCTCCGCGAAATTCCATGTACTGCCCTA 3211677 36 97.2 35 TACTGCCCTA .................G.................. GTGAGGAGCCCAGCCCGGACTTCACCGGTGAGGGA 3211748 36 100.0 36 CGGTGAGGGA .................................... ATGCTTGATCCCGTTGTGGAGATCATAGATTTCGGT 3211820 36 100.0 37 AGATTTCGGT .................................... CTGCGGAAGATATCATCGACGCCCGCAACGATTTAGC 3211893 36 100.0 ACGATTTAGC .................................... ATGAGGCCAGC ========== ====== ====== ====== ========== ==================================== 12 36 35 GCCTCAATGGTGTCCGGCCAAAATGACCGGATTAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [10,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.40,-11.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [45.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [554,151] Score: 0.18/0.18 # # Final direction: R [0.55,0.64 Confidence: LOW] >NC_019952 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3213663 36 100.0 36 CTAGCTGCCC .................................... CCGCCGCGCCGGCACCGTCCGCATCCGCCGCGCCTG 3213735 36 100.0 35 GCCGCGCCTG .................................... GCACTCTACCGGCTCGGTGACATCGCATCCTACGA 3213806 36 100.0 36 CATCCTACGA .................................... CGATCTCGCGCACTGAGCGGTCGCGCCTGTACCTCT 3213878 36 100.0 36 CTGTACCTCT .................................... ATGCCGCCTACTTCTGTTACCCGCGTCAGTCCACGG 3213950 36 100.0 35 CAGTCCACGG .................................... ATTTCTAATCCAACAAGTGTTTGTTCACATTCACA 3214021 36 100.0 35 CACATTCACA .................................... ATGATGTGTGGTGCTGTATGGTGCCGTGTTCCCCG 3214092 36 100.0 35 GTGTTCCCCG .................................... TTGCATCATCGCCTGGATGTGTCAGCGATGATGTA 3214163 36 100.0 36 CGATGATGTA .................................... ACGCTACGCCCAGGCAGGCGCGTCACCTGGCAATTG 3214235 36 100.0 36 CTGGCAATTG .................................... GCTGACGACGCGCGGGAGGTTTCTGCTGCCTGCTGT 3214307 36 100.0 35 TGCCTGCTGT .................................... GCTCAAGGGGATCTGCTCATCGTGCCGGCGGAGTT 3214378 36 100.0 36 CGGCGGAGTT .................................... ATGCATACGCGCGGTGAGTCGAACCGTGGGGTAAAC 3214450 36 100.0 35 TGGGGTAAAC .................................... TTTGTTACCGACACGATCTCACCCACGCGGTACTT 3214521 36 100.0 37 CGCGGTACTT .................................... ATGTCCGCCACCGGCATGGACACTGAGCGTGCGATTT 3214594 36 100.0 35 CGTGCGATTT .................................... GATTCCACGCCGAGCGCATCGGCATTAGTTTGCAA 3214665 36 100.0 35 TAGTTTGCAA .................................... GGTACGAGGCACGCAACGCCCCCGGCTCCCTGTCT 3214736 36 100.0 CTCCCTGTCT .................................... GGCTCGACGA ========== ====== ====== ====== ========== ==================================== 16 36 35 GCCTCAATGGTGTCCGGCCAAAATGACCGGATTAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [10,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.40,-11.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [180,173] Score: 0/0.18 # # Final direction: NA [0.37,0.37 Confidence: NA] >NC_019954 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 131320 30 100.0 37 CAAATTACGG .............................. TATTTTCTTTTTTTTATGCATCATAGACACTTCAAGT 131387 30 96.7 37 CACTTCAAGT A............................. GGGAAAATACAGGTAAGGAATTGTTTATAAATGCGAA 131454 30 100.0 36 TAAATGCGAA .............................. TCACCAGGAACAAAATCAATTTCAGCAATCGATGAA 131520 30 100.0 37 AATCGATGAA .............................. AACGATATAAAAGTCAAAGATACTGATGTCATAGTGG 131587 30 100.0 38 GTCATAGTGG .............................. TCTCTTTCAGCAAATCTACGGGCTATCCTCTTGGCGTA 131655 30 100.0 37 TCTTGGCGTA .............................. GTGCTGAGCCGCTAAATGTGATTGTGCTGTTTACTTT 131722 30 100.0 37 TGTTTACTTT .............................. TCTGTTCCGTATCCTTTTTGCCATAAACCAGTTTTGT 131789 30 100.0 35 CCAGTTTTGT .............................. ATTGCTTCTTCAACACCTTTTTCAATTCCAGTGTG 131854 30 100.0 39 TTCCAGTGTG .............................. GTAGATAGAAACCCATACTTAGATAGAAGCCTTCTTAAC 131923 30 100.0 38 CCTTCTTAAC .............................. ACCAATGCAGTTAAATAAACTTTTTAATGATCTACTAA 131991 30 100.0 37 GATCTACTAA .............................. GTAATTATGGGGCCTTTTATTATCCTAACGTCAAGAG 132058 30 100.0 37 ACGTCAAGAG .............................. CATTTTATGCAGAAGAGGATGGATTAGACTTTGAAGA 132125 30 100.0 38 ACTTTGAAGA .............................. TCTTCTCTCCGTTGTCTTTGTTTCGCTGTCTCCCTCTC 132193 30 100.0 36 TCTCCCTCTC .............................. GTCCAATCGGTCTTTACCTCCACCATTTGAAACCTC 132259 30 100.0 36 TTGAAACCTC .............................. TCATCATGGTTATCCAGCTTATTAACGAGCTGGGCC 132325 30 100.0 36 GAGCTGGGCC .............................. TATCATCAGCCGCCGCTCCTTCCGCCGGTATGAATT 132391 30 100.0 36 GGTATGAATT .............................. TTTGGTATGATTTTCAGGGTGTTGGTGGTAGAACAG 132457 30 96.7 GGTAGAACAG .....................G........ AAATATTCTT ========== ====== ====== ====== ========== ============================== 18 30 36 GTTTATAGCCTACCTATAAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.30,-1.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [453,481] Score: 0/0.18 # # Final direction: F [4.91,0.37 Confidence: HIGH] >NC_019954 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 142577 30 100.0 36 CAAATTACGG .............................. TGGACTTAAAGTTCATCCCATCGCTGTCGCAATGTG 142643 30 100.0 37 TCGCAATGTG .............................. ACGACATGAACCAACCAGCAGAGATAACAGATACACA 142710 30 100.0 38 CAGATACACA .............................. TTTGTTATTATAAGGCTATTATGTTCTTTACATCTATA 142778 30 100.0 38 TACATCTATA .............................. CGGAAGCAAGAGAACCAATTACAATAACATTCAAAGGA 142846 30 100.0 37 ATTCAAAGGA .............................. CTTGCAACAGTGTGGGAACCAAAAAGGAACTTTAGTG 142913 30 100.0 37 AACTTTAGTG .............................. TTTTTTTACGTAGGCCGTTGTAATCCCTAATGATAGC 142980 30 100.0 36 TAATGATAGC .............................. TTCCCAACCGCCCCAGGATCTTTCCCGCCATGCTAA 143046 30 100.0 35 GCCATGCTAA .............................. TTTCTTGTGATGATCTTGATACATTGTAGTTAGGG 143111 30 100.0 35 GTAGTTAGGG .............................. CGTCTCCAAATTCGTTGTATTCTAGACCTATACTG 143176 30 93.3 ACCTATACTG ............................CT TTCTTATA ========== ====== ====== ====== ========== ============================== 10 30 36 GTTTATAGCCTACCTATAAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.80,-1.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [668,65] Score: 0.18/0.18 # # Final direction: F [5.73,0 Confidence: HIGH] >NC_019954 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 147603 30 100.0 35 CAAATTATGG .............................. ATGCTTCTAAAGGCGGGACTAACAATCAAATACTA 147668 30 100.0 39 TCAAATACTA .............................. TTTAATACATATATGCCTTGGCGGGTCTGGAAAACGGCT 147737 30 100.0 36 GAAAACGGCT .............................. AATTTTCGGCTCTGATGGATTTAGCCCCGATGCTCT 147803 30 100.0 37 CCGATGCTCT .............................. TATCGTACACCTTAAAAGGTGTCTTGATAACTTTGAA 147870 30 100.0 37 TAACTTTGAA .............................. AATTCTAAAATCGTATTGGCTAAAAAACTAATATTAC 147937 30 100.0 36 CTAATATTAC .............................. AAATATGAATTTATAGATAAAATGGAGCAACAAGGC 148003 30 100.0 36 GCAACAAGGC .............................. TGTTTTTAAGTGCCCATGATTTTCCGGTCAGCGGCA 148069 30 100.0 36 GTCAGCGGCA .............................. ATCTTCTCGTATACATGATGGATAGCGAAAAAAGAA 148135 30 100.0 36 GAAAAAAGAA .............................. GGGAAGAAACCTTACAACTTGTGCTAGAAATGCGAT 148201 30 100.0 38 GAAATGCGAT .............................. GGTAATAGATAAACTGTATGGAGAGCAAAGCGAAATAT 148269 30 100.0 38 AGCGAAATAT .............................. AGCTATTTAATCTGGCAGTTTTATTCGTTACTGGGTCT 148337 30 100.0 35 TACTGGGTCT .............................. GCGAGTATATCATCTCTCATTTCACTTATGGCTTG 148402 30 100.0 37 TTATGGCTTG .............................. ATAGTAGTAACCGGAATAAACTCCTTCCAAAGCTCTC 148469 30 100.0 CAAAGCTCTC .............................. ACATAATTTATCCGTTTATCTATATCAACTGTAGCCATGGTTTATAGC ========== ====== ====== ====== ========== ============================== 14 30 36 GTTTATAGCCTACCTATAAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.30,-1.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [320,441] Score: 0/0.18 # # Final direction: F [4.77,0.37 Confidence: HIGH] >NC_019954 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 237324 30 100.0 35 NNNNNNNNNN .............................. GATGTTAACTTTATAAACATAAATGCAGACGAACT 237389 30 100.0 39 NNNNNNNNNN .............................. CATTTGAGGATCTGGAAGGGCTGACCTTAGCCTCCGGAG 237458 30 100.0 36 NNNNNNNNNN .............................. AGAAACGACACGACAAATTATGAAAGAAAGCAATTT 237524 30 100.0 38 NNNNNNNNNN .............................. CGGCTAACCGCATTATAATACGTGATGCAAGTGGCCGG 237592 30 100.0 39 NNNNNNNNNN .............................. GTTGATGAACATTCCATAGATAGTTTGCAATTTATGTGT 237661 30 100.0 36 NNNNNNNNNN .............................. ATTGGAGAAACTTTTAATAGAGCATAAAAGGACTGA 237727 30 100.0 40 NNNNNNNNNN .............................. AAAAAAGATATAGTTTTTTAGAAGTCTTGAATGATGAAGG 237797 30 100.0 40 NNNNNNNNNN .............................. TTTGATTGAGGATATATTCCTTGCTAATGATATAGCTTTT 237867 30 100.0 36 NNNNNNNNNN .............................. CCATAATCAGTAACTATTTCTCTGCTAGCATTTCTT 237933 30 100.0 41 NNNNNNNNNN .............................. TATTCCATTTTGTGTTTTGTATAGTTACCAAATCACCAAGC 238004 30 100.0 37 NNNNNNNNNN .............................. TTGCTTTGATGAGGTAGCACTATTTTTAGAAGTTGAG 238071 30 100.0 37 NNNNNNNNNN .............................. GTCACAATTTGGGCAATACCATGTTTCCATAGGCGTG 238138 30 100.0 36 NNNNNNNNNN .............................. AGGCTTGCCCAAAAAGCGGAATATTATTTGTACTTT 238204 30 100.0 36 NNNNNNNNNN .............................. TTTGCGGGTAAACAATAAGGCAGAAAACACAATAAC 238270 30 100.0 37 NNNNNNNNNN .............................. ATGGTGAAGTTATAGAAGATGATACTAGTAGCACTAA 238337 30 100.0 36 NNNNNNNNNN .............................. CATTTATTGCAAACTATGCACTTTCCTTTGCTTCAA 238403 30 100.0 38 NNNNNNNNNN .............................. AACTCTTCTAAAAAATCATTAAAACTAACTTTTTTTAC 238471 30 100.0 36 NNNNNNNNNN .............................. TTGTAATAACAATATAATGATGCAAATAAATAAAGC 238537 30 100.0 36 NNNNNNNNNN .............................. ATGAAGAAGCAGAGATTGACAAGCCAAGCTATGCAA 238603 30 100.0 36 NNNNNNNNNN .............................. TACCTTGGAACTGTTCGCTCATGATTATAATAATTC 238669 30 100.0 37 NNNNNNNNNN .............................. TAAGACTCAATCCAACTTTCCAAAAATTCACGCAAAG 238736 30 100.0 39 NNNNNNNNNN .............................. TGAAACCCTTTCTTCATTTTTGGCCAATGAGCTTCTAGC 238805 30 100.0 37 NNNNNNNNNN .............................. GTCGAAGAGGAGGTGGCGAATTGACGAGGGAAGAGCT 238872 30 100.0 39 NNNNNNNNNN .............................. GCAGCAAGTTTTGCGGCACCACTTTTGGCGATATTGAAT 238941 30 100.0 40 NNNNNNNNNN .............................. TGCCTATCCACTGTGGAAATGGCTGCTCTTCGGGCATTTC 239011 30 100.0 37 NNNNNNNNNN .............................. TGGAATATATGGTCCGGTATATGTTGATCTGTAGGAA 239078 30 100.0 38 NNNNNNNNNN .............................. CAGGACTATATTGGAAATATTCAAAGATGCACTTATTG 239146 30 100.0 38 NNNNNNNNNN .............................. TGATGTAATCATTGATTTCTTTAGGATTAAAACCACAT 239214 30 100.0 35 NNNNNNNNNN .............................. TCGGGTCATCAGACTGATCATCCAGTGTTGCCACC 239279 30 100.0 40 NNNNNNNNNN .............................. CACTAATGTTGGATGAATCATCACAGATACAAAATGAAAC 239349 30 100.0 41 NNNNNNNNNN .............................. ATAACAAGATTGAATTCAGTCAAAAGGAAATGGATAAGGCA 239420 30 100.0 36 NNNNNNNNNN .............................. TGAAGCTTGATGACATGAAGAATATCCTTAAAACCC 239486 30 100.0 36 NNNNNNNNNN .............................. ACTGGTACATGGCCGCAGTCTGTTCCTGTATGCTGG 239552 30 100.0 40 NNNNNNNNNN .............................. TGGACTACCAGACACAAAGAGATCGCGCCGATAAGGCCGA 239622 30 100.0 39 NNNNNNNNNN .............................. TTGTAAACACGCCCATCTCTAGTGACAGTATATGTCTTT 239691 30 100.0 36 NNNNNNNNNN .............................. TGGAGGTGTTGTAAATGGCATACAAAGGCCAACCCG 239757 30 100.0 37 NNNNNNNNNN .............................. CTTTGCACGAGTATGAAAACAGCCTCATCTTGCTCCC 239824 30 100.0 41 NNNNNNNNNN .............................. CAGAATACTACCTCTCCTTGCCAATCTTGTTTTAAACCATC 239895 30 100.0 35 NNNNNNNNNN .............................. CATGGGGAGTGCTGGGCAAGACTTCGTAGACGAAG 239960 30 100.0 38 NNNNNNNNNN .............................. GTTGATAATTGTATTTTTAATTTACTGTTTATCCTTGT 240028 30 100.0 36 NNNNNNNNNN .............................. ACGACAGACAGGATATAGAGGATTTGGTTACACGTG 240094 30 100.0 36 NNNNNNNNNN .............................. CTGAAAGTAGGAAGCCGACCGGCATAAACAAAGCCA 240160 30 100.0 37 NNNNNNNNNN .............................. AGGATAAAAGATAACTGGCAAGTGTTTCCTAGCAGGG 240227 30 100.0 38 NNNNNNNNNN .............................. CTATCTCCTGGTCGCCTTCAGCCAAGGCGAACATCCTT 240295 30 100.0 39 NNNNNNNNNN .............................. AGACATGGCATTGATTTCTTGGGATTCAGGACCTTTATG 240364 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 46 30 37 GTTTATAGCCTACCTATAAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.30,-1.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [73.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [544,1869] Score: 0.18/0.18 # # Final direction: F [4.77,0.55 Confidence: HIGH] >NC_019954 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 240520 30 100.0 38 GAGATAGAAC .............................. TTATAAATGGGGTGAAATTATGGATCTTACGACAATTA 240588 30 100.0 36 ACGACAATTA .............................. CCAGCCTTGGCACCAGCTCTATTGGTATATATCCGG 240654 30 100.0 36 ATATATCCGG .............................. TGAATTGTCCTTGGATGACATCCCGCCATATTTGCC 240720 30 100.0 37 CATATTTGCC .............................. CCAGCCTTGGCACCAGCTCTATTGGTATATATCCGGC 240787 30 100.0 37 TATATCCGGC .............................. ATAATCTCATATTCTTTTTTCATAGTCTTCGTTCACC 240854 30 100.0 39 TTCGTTCACC .............................. ACGACTATCCCGGGAGAACACCCGAGACTGCCCAATTTT 240923 30 100.0 42 GCCCAATTTT .............................. ACCAGAGCAGGCGCGAAACCCGTAGTTGCTGTTGGCATTGCC 240995 30 100.0 37 TGGCATTGCC .............................. TCGGCTGTCCTGGCTCGGGAATGAATTGAGAAGTGAC 241062 30 100.0 37 GAGAAGTGAC .............................. TATGCCTACAAAGTCTTTTTATCAAGTGCTATCCGCA 241129 30 100.0 39 GCTATCCGCA .............................. TCAAAAGAGGAGAGAATATCAAGAACTGGCAAGGGATTC 241198 30 100.0 38 CAAGGGATTC .............................. TCTACTTTGTCCCAGTCAATACATGCCCATATTTCATA 241266 30 100.0 38 ATATTTCATA .............................. ATAAACTTGTCAACCGATTCGCTAATAATACCTTCCAC 241334 30 100.0 36 TACCTTCCAC .............................. GGCTCTAATGCCCTAAATTGGTCTAACCCGTTCTTT 241400 30 96.7 35 CCCGTTCTTT .....................G........ TCACAATCTTTTTTTGCGCAATCACTCTTGTCTGG 241465 30 96.7 39 TCTTGTCTGG .....................G........ GCCCTTGAATTCACTTTTGATAATGAATATATCAAAGAA 241534 30 96.7 TATCAAAGAA .....................G........ GCTTTTCTTCT ========== ====== ====== ====== ========== ============================== 16 30 37 GTTTATAGCCTACCTATAAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.30,-1.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [3740,699] Score: 0.18/0.18 # # Final direction: F [4.68,0.64 Confidence: HIGH] >NC_019970 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2661344 30 100.0 36 AAGATCTCTT .............................. ACTAAATGGTCAAATTCTACATTATCGTGTTCATAT 2661410 30 100.0 36 GTGTTCATAT .............................. TATATTTCGTACCCGTAGTATTCGCTATGTTGTTGC 2661476 30 100.0 35 ATGTTGTTGC .............................. GGACCTGTAACAGTTGCAGACTATGTCAAAAATAC 2661541 30 100.0 37 TCAAAAATAC .............................. GAAGAAATCAATCAAAACTGGGAAGTCATCAGTAAAT 2661608 30 100.0 36 ATCAGTAAAT .............................. GTACTAGTGGCTCTTTGAATTTTGTAACAAATCCTA 2661674 30 100.0 36 ACAAATCCTA .............................. GATGCCAGACCAGCCGGATAATCTTGTAGCATTGTT 2661740 30 100.0 35 TAGCATTGTT .............................. AGGAAATGCGGGGCCTATTTTTTTATTCTCTTTTT 2661805 30 100.0 40 TTCTCTTTTT .............................. GTGGGTATAGTCAGGGATTCGGCTGCCCTTGTACCGTCAA 2661875 30 100.0 36 GTACCGTCAA .............................. TATTTGCTTTTGGTCTTAAAAAGAAGCGCGTCACTC 2661941 30 100.0 36 CGCGTCACTC .............................. ACTTTGTTTTTTAGATGGTAACTTGTCGAGAGTTGA 2662007 30 100.0 38 CGAGAGTTGA .............................. TAAAAAATTATCTTACAAAGCCAGACAAGCTATAAAAA 2662075 30 100.0 36 GCTATAAAAA .............................. TTAAAATACTGCGACGAATTTTACGAAGCGAAGCGT 2662141 30 100.0 36 AGCGAAGCGT .............................. TTTGCTGTGCCACGTCTACGTCATCTATCTGGAAAT 2662207 30 100.0 35 ATCTGGAAAT .............................. GACTTTTATGTAGACGCCATAGAAAACTATGGCGT 2662272 30 100.0 38 ACTATGGCGT .............................. GAATACATTAAGAACGGAAAGGAAGTTGTAGAACTTGT 2662340 30 100.0 40 TAGAACTTGT .............................. CATATATATCTTCAAATGGAAGCCCCGCCACCATTTGAAC 2662410 30 100.0 37 CCATTTGAAC .............................. GATTTTATATCACTATCTATTTCTACTCTTTTTTCAA 2662477 30 100.0 36 CTTTTTTCAA .............................. AAAAATTTCAATTTGGTTCTACTATTTGCTTATATA 2662543 30 100.0 36 TGCTTATATA .............................. GTATTGAATCGTAACAATTTTGATGTGTATTGTTTT 2662609 30 100.0 36 GTATTGTTTT .............................. ACCTTTATCTAAAACATGGTGCATACCCATTTTAAC 2662675 30 100.0 37 CCATTTTAAC .............................. ACAGGTGAAATCCCTGTAAGCAGGTGTAATAACCTGC 2662742 30 100.0 37 AATAACCTGC .............................. TCAAAGATTTTTTGATAAGGTATATAATTATATCTCT 2662809 30 100.0 37 TTATATCTCT .............................. CTTAAAAAGGATTAATAAGTTATATCGGCAAAACTTT 2662876 30 100.0 36 GCAAAACTTT .............................. CTATCACATCTTTAAAACTAAATTCATTGGGATTAT 2662942 30 100.0 39 TTGGGATTAT .............................. CGTCTCCCGTTCCTGCTGTGGCGTCTGTAGAAATTGCCC 2663011 30 100.0 35 GAAATTGCCC .............................. TTTCATTTAGAAAGGGCTGGGGGCTATGTAGTATT 2663076 30 100.0 36 ATGTAGTATT .............................. CTTGTATTGACTGGTTATATATCTCTTTGTTTTCAT 2663142 30 100.0 37 TTGTTTTCAT .............................. AAATGGGCAGTCCCAGGCAACGGCTACGGCGAAAGCA 2663209 30 100.0 37 GGCGAAAGCA .............................. TTTATTTGGAAGAAGGCTATGCCGAGGGTGTCAGAGG 2663276 30 100.0 37 GTGTCAGAGG .............................. CGTCAAACAGCGAATTGAGCCAATAAGCATTTCCACT 2663343 30 100.0 36 CATTTCCACT .............................. AATGTGCCATAGAGACATATACAGCTACTGATGTTG 2663409 30 100.0 37 ACTGATGTTG .............................. TGTATTCTGTATCTTTACGCTTGCACCCCAGCCGTAG 2663476 30 100.0 37 CCAGCCGTAG .............................. TTGTCAGTTTTTTAGCCATTTATATTCCCCCTTAGAA 2663543 30 100.0 37 CCCCTTAGAA .............................. CAGTTCAAATTTTTTGACGAATGACCCCCCAATGCCT 2663610 30 100.0 38 CCCAATGCCT .............................. TACGCTTTGTCAAGATATACGTAGAAAATAGAAGAAAA 2663678 30 100.0 36 TAGAAGAAAA .............................. TTACTGCCTGTATCTTTAAGACCTTGCCATGTTGTT 2663744 30 100.0 35 CCATGTTGTT .............................. AAAATTCTCGGCGGATTTCCAAGGCACAGGACCGT 2663809 30 100.0 37 ACAGGACCGT .............................. GTTCACCAAATCATCATAAGATGATTTTAGTTTATTG 2663876 30 100.0 38 TAGTTTATTG .............................. TGCAGAATTTAAAAGCAAATGGGCATTTATAGCAGCTA 2663944 30 100.0 36 ATAGCAGCTA .............................. TAATGTGCCCGGGTCACTATCAAATGGTCCTTCTAA 2664010 30 100.0 36 GTCCTTCTAA .............................. TTCTATACATACAATCCGCCGAATTCAGTTAGAAGC 2664076 30 100.0 37 AGTTAGAAGC .............................. TTAATGTAGATGATATAGTCAAAGACAGCATAGAATT 2664143 30 100.0 37 GCATAGAATT .............................. CATCAACACAAAATCAGGCAATCCCAGCAGGTTACCA 2664210 30 100.0 39 CAGGTTACCA .............................. AAATAGTTCCAGATAAAACAATTTTACATCATGAAAAAA 2664279 30 100.0 36 CATGAAAAAA .............................. AGGTATCCTTGCCATGTGATTTCTTGGCGTATCACG 2664345 30 100.0 38 GCGTATCACG .............................. ATAGCTGACAGCGGAGGGTATTTGACAGCGGCAAACGT 2664413 30 100.0 36 CGGCAAACGT .............................. CAATACTGCCTCTCTTAATTTTGTCATGCGTTATCA 2664479 30 100.0 36 TGCGTTATCA .............................. CATCATCAACTGCTAATGTCAATTTCATACCTTTCT 2664545 30 100.0 39 ATACCTTTCT .............................. ACAGACTTATGAAGCAGTATCTTGCAGGGAGTGTGTTGA 2664614 30 100.0 38 AGTGTGTTGA .............................. TGCAGAATTTAAAAGCAAATGGGCATTTATAGCAGCTA 2664682 30 100.0 38 ATAGCAGCTA .............................. CCGGATATATTTTTTGTACTGTCTATATTGAGCTTTAA 2664750 30 100.0 36 TGAGCTTTAA .............................. GTTTTTACTTGAAGTAAATGTTGATGTTTTAGTTGA 2664816 30 100.0 36 TTTTAGTTGA .............................. AATGGATATATTAAGCCATTTTATTTAAGCGAATGG 2664882 30 100.0 37 AAGCGAATGG .............................. TTTACGACAAAACAATATATCTTGATAAGAGCGAGGA 2664949 30 100.0 38 AGAGCGAGGA .............................. TTGTCATGACATTTTATTAATGTTATACTGTTTATAGA 2665017 30 100.0 35 TGTTTATAGA .............................. GTACGAGTTAGGCAGTAACACAAATCCATATTCTT 2665082 30 100.0 38 CCATATTCTT .............................. TCGGAGAAGCTCAATGGCAAAAGATATTTCACAACAAA 2665150 30 100.0 37 TCACAACAAA .............................. CTTATAAAATTTATACTTATTACATAAATACTCATTA 2665217 30 100.0 37 ATACTCATTA .............................. TCAATGTTTGTTAATGAAAAAATAATAAAAAATTATT 2665284 30 100.0 38 AAAAATTATT .............................. CTCGAATTGAACAGAGGTCGTCTGTCGCCTTCTACTTA 2665352 30 100.0 38 CTTCTACTTA .............................. GGAAATTCCAAACGGCTCAAAATTGGCTACAGATGCTG 2665420 30 100.0 37 ACAGATGCTG .............................. CAGTCTGTCAAAATAGTCAGAACATTCCTACATATTA 2665487 30 100.0 38 CTACATATTA .............................. ATATAAAATTATTGGATTTAGCGACGATAATCCATTTA 2665555 30 100.0 37 AATCCATTTA .............................. TTAGCGGACAAAAATGGCTTCACATCTTAGCACGCAT 2665622 30 100.0 36 TAGCACGCAT .............................. AGGAGGAAATACCGATTCCGAAGCCACCATTAGAAG 2665688 30 100.0 36 CCATTAGAAG .............................. TATAGAAAAAGCAGAATTAAAAAATGTTCTGTATTG 2665754 30 100.0 37 TTCTGTATTG .............................. TCTTTTTTTATTTCATCTTTATATTTTTCCATTTCCT 2665821 30 100.0 36 TCCATTTCCT .............................. TAGATCCTGATTGTTAGGCAAACTTGTCTGGTCTGT 2665887 30 100.0 35 TCTGGTCTGT .............................. TTAAAGTATTGATATTAGTATTAATATCATTTATT 2665952 30 100.0 39 ATCATTTATT .............................. CTTATATATCAAATATAAAAATTGAAGAATTATTTCAAT 2666021 30 100.0 35 TTATTTCAAT .............................. CTTAATGGCAGTAGTTTTTATCGTTATATTCAAAG 2666086 30 100.0 37 ATATTCAAAG .............................. ATCGTCCTTCTCACATTCCGCTACCACCTCCTTGAGA 2666153 30 100.0 37 CTCCTTGAGA .............................. TAAACTAAATTATCTATTTTATATCACCTTCTTTCTT 2666220 30 100.0 37 CTTCTTTCTT .............................. CGGATAGAGTCAGTGGGTTCGATCTCATCGCAAGTTT 2666287 30 100.0 36 TCGCAAGTTT .............................. GTATCATCAGAAACATATATAGGCATATTAGACAAT 2666353 30 100.0 35 ATTAGACAAT .............................. GTAGACGACAGAATCATTGAAAGAAAGACTTGGTT 2666418 30 100.0 35 AGACTTGGTT .............................. CTGCCCCTGACGCTTCACTGTGGCTGTGTTACCGC 2666483 30 100.0 38 GTGTTACCGC .............................. GATAATTCTATCTCCATTGCAGCTTCTTTGCACTCTTT 2666551 30 100.0 38 TGCACTCTTT .............................. GAACTTGGTTTCACCTTCTTCTTCCGCAACTGTTCGGA 2666619 30 100.0 36 ACTGTTCGGA .............................. CTCGTGTTCGATTGTCCGAATCCGAATACGAAAATT 2666685 30 100.0 36 TACGAAAATT .............................. GCCATCTTTGACATATATATTTATTATCATCAACTT 2666751 30 100.0 36 TCATCAACTT .............................. AAAAGAGTGTATGATAAAGGCAAAAAAACAATTTTT 2666817 30 100.0 38 AACAATTTTT .............................. TCAGCTTTTCAACATCGTCAAGTCCAGCGAATATAATC 2666885 30 100.0 35 GAATATAATC .............................. ATGTTAAAATATATCTAAGGAGGTTATTATATGTA 2666950 30 100.0 36 ATTATATGTA .............................. GGCTATGGTTGTTAGTACCGAAAAAGAAAGGCACTT 2667016 30 100.0 37 AAAGGCACTT .............................. CGGTTCACCCGACATGGCTTCATGGAAGTCTATGTCG 2667083 30 100.0 36 GTCTATGTCG .............................. CCTTTTACAACTGCAAGAATAGGACTCCGTTTGTCT 2667149 30 100.0 36 CCGTTTGTCT .............................. AGTTATTAACTTCACTTTCCCTCCCTTCAATATCGA 2667215 30 100.0 38 TCAATATCGA .............................. GAAGAAGGCGGAGATGTTAAGATGTTTGAACATCTTAA 2667283 30 100.0 37 AACATCTTAA .............................. CCATGCGACAAGGCATATTGTTGTACCATCGTGTCAT 2667350 30 100.0 36 ATCGTGTCAT .............................. ATAAATTTTGCCTGTATTATTTAATTTCACTGCAAG 2667416 30 100.0 37 TCACTGCAAG .............................. CTAACACCAGAGAATATAAACGATCCAACCGTAACAC 2667483 30 100.0 37 ACCGTAACAC .............................. TTTGTTGATTTTATCTTTTTCGGTTTATCTGCGCCTC 2667550 30 100.0 38 TCTGCGCCTC .............................. GACATATTCACACATCGTGATATAATATAGTTAGAAAG 2667618 30 100.0 40 AGTTAGAAAG .............................. TGTTGCCTGCGTGCATAAGGCAAATCGTAACCCACGTTTA 2667688 30 100.0 36 CCCACGTTTA .............................. GAGGTTGCTCTAGCCTTCTATAACAGTTCGTCACAA 2667754 30 100.0 41 TTCGTCACAA .............................. AAAAACACAGGACGATACAAGCATAACCGAAAATGGAGAAT 2667825 30 100.0 37 AATGGAGAAT .............................. AAATGGCATATGTAACACCGAAAACAAACTGGACGGT 2667892 30 100.0 38 ACTGGACGGT .............................. TAAAACTTTTTTCACTGTCTTTAAACTCTTCTATTTCT 2667960 30 100.0 38 TTCTATTTCT .............................. TAATTGACAAAAAATTTATAGACGATGTTTTAGGAAGG 2668028 30 100.0 38 TTTAGGAAGG .............................. CTATTTCTCTATCTCTTGTTTGTGTTTTTTCTCTTGTT 2668096 30 100.0 35 TTCTCTTGTT .............................. ATGCTAAGCATAGAAGTGAAGGCCAATCTGGAATA 2668161 30 100.0 37 ATCTGGAATA .............................. CCGATTTCTTTCCAATTTACTTTTGCAAAGCCTTCAA 2668228 30 100.0 37 AAGCCTTCAA .............................. TTAGTCAATGCCTCAACTTTTTGGCGCTGTAGGTCTG 2668295 30 100.0 36 TGTAGGTCTG .............................. CTTCCTGTGTCGCCTGTGGTTTTAGCGGATTTGTAT 2668361 30 100.0 36 GGATTTGTAT .............................. CTATTGTTCTTAACGCCTCACGATGTGTTGTCGAAT 2668427 30 100.0 38 GTTGTCGAAT .............................. AAAGCTGGCACTGCAGCATCAGATCAGGTTTTAAGAAA 2668495 30 100.0 36 TTTTAAGAAA .............................. ATGGGAAGACCACACCAGCAACAACGGTACACCATA 2668561 30 100.0 36 GTACACCATA .............................. CAAAGGTAATAGGACTTATTTCAACAATACAAGGTG 2668627 30 100.0 37 ATACAAGGTG .............................. CAGAAAAAAGACAAACTGATAAAGATAACAAACAGCC 2668694 30 100.0 36 ACAAACAGCC .............................. TACAATTAGAAAGGAAAGCATACGCAGGTGGACGGA 2668760 30 100.0 38 GGTGGACGGA .............................. TAATTTAGATAAGACATCACTTCTTATGTAAGGAATAT 2668828 30 100.0 35 TAAGGAATAT .............................. TTGTTGCACCTGAACTCGATACTGTGTTTGTAAAA 2668893 30 100.0 39 GTTTGTAAAA .............................. CGGCAGATTTCCAAGGCACAGGACCGTTAACATTTACGT 2668962 30 100.0 ACATTTACGT .............................. TCGTTAAAAT ========== ====== ====== ====== ========== ============================== 115 30 36 GTTTCAATTCCTGATAGGTAGGCTAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-2.40,-1.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [58.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [102,170] Score: 0/0.18 # # Final direction: R [0.37,5.27 Confidence: HIGH] >NC_019956 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 96169 29 100.0 35 NNNNNNNNNN ..........C...C.A..C...CA..C. AAACATGTAAAAAAAGTAGAGATAAGTTATTTCGA 96233 29 100.0 37 NNNNNNNNNN ..........C.................. TCGGTTGTTTATAGAAGTAATCGCCAGAATATACCCA 96299 29 100.0 36 NNNNNNNNNN ............................. AGTAGCAATGTGACAAGCAGTAGTGCAACTTTGACA 96364 29 100.0 37 NNNNNNNNNN ............................. TAGCTTACTGTTTAAGAGCAGTTGTGAGATACTTAGA 96430 29 100.0 36 NNNNNNNNNN ............................. TCTTGGTATGTCGCTTAACACATTTGCAGCCAATTT 96495 29 100.0 37 NNNNNNNNNN ............................. TACCATCTTTTATATAAGGCATAGCTCCTAACTGCTC 96561 29 100.0 38 NNNNNNNNNN ............................. AATGAGCCAGAGGCTGAAATGTTGGTCGAAAAAATTTC 96628 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 8 29 36 CTTCTAAACCTACATAGGATATTTCAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.97%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.60,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [66.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [316,115] Score: 0.18/0.18 # # Final direction: R [0.55,0.68 Confidence: LOW] >NC_019958 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 94572 24 100.0 26 NNNNNNNNNN A.A...T..........T.G..T. GTCCTCGTTGTCAGTCCGCCAGAACT 94622 24 100.0 37 NNNNNNNNNN ........T...........G..T AGTGCCGCCGGTCCGCTCAGCAACGCGATCAGGGGCC 94683 24 100.0 38 NNNNNNNNNN ........................ AAACGCACCGCCTCCGAACCGAGCTGGTAACTCGGGCT 94745 24 100.0 37 NNNNNNNNNN ........................ GAACGCCTTACCCATCACAGTCGCGCGCGATCGGGCT 94806 24 100.0 37 NNNNNNNNNN ..........TA............ TGTGCCGCCGATCCACTCAGCGACGCGATCAGGGGCT 94867 24 100.0 37 NNNNNNNNNN .......T..CA........G... ACTATGCCGGGAACGCGCGGCCAGATCCACTTGGGCT 94928 24 100.0 37 NNNNNNNNNN .........G..T........... GTAGCCACTGCCGACGGGCTGTCCCACATCCCGGGCT 94989 24 100.0 37 NNNNNNNNNN ........................ GAGACCGTCAGGCTGCGCGGGTATTCCTCCCCGGGCT 95050 24 100.0 37 NNNNNNNNNN ........................ GACGGCGCGCCACCATGAGACGCCGCCGGATTGGGCT 95111 24 100.0 1 NNNNNNNNNN .....................C.. NNNNNNNNNN ========== ====== ====== ====== ========== ======================== 10 24 35 CATCCCCGCAGGCGCGGGGAAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,1] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-6.00,-5.80] Score: 0/0.37 # Array degeneracy analysis suggestion: R [9-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [230,58] Score: 0.18/0.18 # # Final direction: R [0.55,0.68 Confidence: LOW] >NC_019970 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 269257 30 100.0 47 TAATATAACG .............................. CTGATAATACATCGAGTTTAAGCAAAAATGGCAGTGTTTTTAGCCTA 269334 30 83.3 39 TTTTAGCCTA -----......................... ATTATAAGCCAAAGCATATTGACTTCTCAGACTCTCAAT 269403 30 100.0 38 GACTCTCAAT .............................. CTTGATGTTTAGCCCTAAAATCGTTGACAAACTGAAAA 269471 30 100.0 35 AAACTGAAAA .............................. AATTTTTAAGCGACTTTTTTGTTTTGTTTTTCATG 269536 30 100.0 GTTTTTCATG .............................. TGTGGTTGAAG ========== ====== ====== ====== ========== ============================== 5 30 39 GTTTTTAGCCTACCTATGAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [3102,349] Score: 0.18/0.18 # # Final direction: F [5.82,0.41 Confidence: HIGH] >NC_019970 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 266775 30 100.0 38 GAAGTGAAAG .............................. AGACATAAAAACAATAATAACGCTAATAAGGCGTTTTA 266843 30 100.0 37 AGGCGTTTTA .............................. TTTCGAAAATGTGGTATAATGTTACTGGTGATGAAAA 266910 30 100.0 35 GTGATGAAAA .............................. AAAGGATATGAGTTTTATAAGTGGCTGATGGAAAG 266975 30 100.0 37 TGATGGAAAG .............................. CTATACCTACAAGCCTTACCGTTCGTGATGCCAATGG 267042 30 100.0 36 ATGCCAATGG .............................. TTTATCATCAGCTTGAAGCAGAAAAAGCGAGATTAA 267108 30 100.0 36 GCGAGATTAA .............................. TTTAGGAAAATAAAGGAGAGATGAAAAAATGTTTGA 267174 30 100.0 38 AAATGTTTGA .............................. TAGAATTGTATGCTTTAAAAAAGATTGAATTTAAAGAC 267242 30 100.0 36 ATTTAAAGAC .............................. CGCTTTTCGTATACAGTTTTGTACCGTCGCTGGCGT 267308 30 100.0 39 TCGCTGGCGT .............................. AAACAAAAAAGAAGAAGGCTTACTCAGCCTTCTTGGACT 267377 30 100.0 37 TTCTTGGACT .............................. CCTCGATTTTGTATATATTTCTGCAAGAGCATCTTCT 267444 30 100.0 38 AGCATCTTCT .............................. GCAGGCTGCACAACATCGCTTGCCTGCCAGTTTGTTTT 267512 30 100.0 38 AGTTTGTTTT .............................. TCATAGAATTCCTGCAAATGTCTTGGCTTTAGCTTTGA 267580 30 100.0 37 TTAGCTTTGA .............................. TATCTTCCCAGAATTCTAAAAGCTCTGGATCGTCCTC 267647 30 100.0 37 GATCGTCCTC .............................. TAATGCAATGCAAAATCAAAGTACGACATTTAACGGC 267714 30 100.0 39 ATTTAACGGC .............................. CCTAGTGAAACTATAAAAACAACAAAAACACAGAAACAG 267783 30 96.7 37 ACAGAAACAG ............G................. CCTTCACCGCAGCATGGATCAAGGACGTTATATTGTG 267850 30 100.0 36 TTATATTGTG .............................. ATAAGTTCCGCATCACATTTTTCATCATCCATATAG 267916 30 100.0 38 ATCCATATAG .............................. CCGACGAAGAATATAAAAAATATAAACAAGTCGTAATT 267984 30 100.0 37 AGTCGTAATT .............................. TGAACTTAAACAAAAAGGTTTTGATGTTGTTATAACA 268051 30 100.0 37 TGTTATAACA .............................. GTATCCGATGGGATTGACTTGTACGTTTTGTGTTCCA 268118 30 96.7 37 TTGTGTTCCA .................A............ TGATTCTTGATATACCTAAAAACATCTTCTAAATTCT 268185 30 96.7 38 TCTAAATTCT .................A............ TTATTTTTTCTTTTTCTCCTTTATCGTTTGTTTTAATC 268253 30 96.7 38 TGTTTTAATC .................A............ ATCGAATATGAGAAGAATTTGAATGAAGAATTTAGAGA 268321 30 96.7 37 AATTTAGAGA .................A............ AATGATACGCCAACGTTGCCGGGTGAGACACAATTTC 268388 30 96.7 35 ACACAATTTC .................A............ TTATGTTCGTATGTTAAGTAACTTTTGTAAAGTGC 268453 30 96.7 36 TGTAAAGTGC .................A............ TTAACTCTGAAAACACTCTGCCTAATAACATTGGAA 268519 30 96.7 35 AACATTGGAA .................A............ AGTGGATTTGGGAATGTGATATGAATGACCTCATC 268584 30 96.7 39 TGACCTCATC .................A............ TTTCTTCAACACAATCAAAAGCATCTTCAATATCTCTAT 268653 30 96.7 40 ATATCTCTAT .................A............ TTTTTTCGTATGTGTACAATATAGACAATACTCACTATAC 268723 30 96.7 36 CTCACTATAC .................A............ ACATCTTTTGTTAAGCGTCCAATAAGGACTACATTA 268789 30 96.7 36 GACTACATTA .................A............ CCTCTTACATGGGCCTCAAGAATATTCGGTACGACA 268855 30 96.7 37 CGGTACGACA .................A............ CTTCCAAATACAGACTTTCCAAAGCTTGAGTCTGCTA 268922 30 96.7 37 GAGTCTGCTA .................A............ TTGGAGCTGGTACTGCACTGCTGAAATTAGCCAGTGA 268989 30 96.7 34 TAGCCAGTGA .................A............ ATAAAATATTCCGCTTTGATTGTACCGCATTTTG 269053 30 96.7 38 CCGCATTTTG .................A............ TCTTTTGGCAACAAGCTACCAAACACAGAAACCCTGAC 269121 30 96.7 39 AAACCCTGAC .................A............ TTTGTCCTCAGGCCAGTATAGGCTATAATTTTCACATAT 269190 30 100.0 TTTCACATAT .............................. AAGCATATTG ========== ====== ====== ====== ========== ============================== 37 30 37 GTTTTTAGCCTACCTATGAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [620,695] Score: 0/0.18 # # Final direction: F [5.37,0 Confidence: HIGH] >NC_019965 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3164522 36 100.0 35 CAGCCTTGAC .................................... CGGGACTGACGCCGTCATGAGACCGACACCAACGA 3164593 36 100.0 36 ACACCAACGA .................................... GGGATGATGACTGCTGAACAGGTCGCCGGGGCACCG 3164665 36 100.0 35 CGGGGCACCG .................................... CTGCAGCCCCTGATGCAGATGTTCATCCGGTTGAT 3164736 36 100.0 36 TCCGGTTGAT .................................... CCCGCCAGCGTAGGCTGTTGGTCCCACGGAACGGGT 3164808 36 100.0 35 CGGAACGGGT .................................... ATGTAGCCGTAGACCATCTCGACACCATCAACAGT 3164879 36 100.0 37 CATCAACAGT .................................... ATGTGGCATACAATCGAGAAGCGGTGGCAGAATTGGG 3164952 36 100.0 36 CAGAATTGGG .................................... TTGTCCTCAGCGATCGCGTACCAGCAGCGACAGCGA 3165024 36 100.0 37 GCGACAGCGA .................................... CCGTCCATACCCAGTGGGACGGCCACGTTGATCGGAT 3165097 36 100.0 36 TTGATCGGAT .................................... GGGATCCGCGATGACCGGGAGCGCGACCGCATCGAC 3165169 36 100.0 CCGCATCGAC .................................... GGCTCTTCGAA ========== ====== ====== ====== ========== ==================================== 10 36 35 CCCTCAATGGTGTCCGGCCAAAATGACCGGATTAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [10,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.40,-11.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [35.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [453,173] Score: 0.18/0.18 # # Final direction: R [0.55,0.64 Confidence: LOW] >NC_019970 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2643367 30 100.0 37 NNNNNNNNNN ....A...C.T.T................. TGCGTCGCCTGCGGTTTTAGCGGGTTAGTATTAACAA 2643434 30 100.0 37 NNNNNNNNNN ............T................. AATTGTTCCCATCTAGCTTTTAGGTGCTGGCGACGAG 2643501 30 100.0 38 NNNNNNNNNN .............................. GTGAGAAATATGAAAAAGATATTCATCAGTCATAAATA 2643569 30 100.0 36 NNNNNNNNNN .............................. TAAGTTTTCCGAATCGGAAAAGCATATTTTCTCCCG 2643635 30 100.0 37 NNNNNNNNNN .............................. TTCTGAATCCCCCTTAACTTTGATTTCTTCTCATTGA 2643702 30 100.0 36 NNNNNNNNNN .............................. TCTTACATTAATTGAATGGTGGAATACTGAAGCATA 2643768 30 100.0 36 NNNNNNNNNN .............................. CCGAAATTATTATTTTTTATTATTCCCTCTATATAT 2643834 30 100.0 36 NNNNNNNNNN .............................. GCAAACTCTGGAGTTTCTGATGTGTCTACAATGCAA 2643900 30 100.0 39 NNNNNNNNNN .............................. CTTTTTATCTCATCTCAAATATTCAGAAAATTACAACTT 2643969 30 100.0 38 NNNNNNNNNN .............................. TTTACTATATCATGCACCGTGAAATATCTTTTGCCGTT 2644037 30 100.0 35 NNNNNNNNNN .............................. TGATAACTTCAAAGAAGAGCTTGCAGATGTGGCAA 2644102 30 100.0 36 NNNNNNNNNN .............................. TCTGTCTGCCCACCGGATAGTCTGTATTTCTCACCA 2644168 30 100.0 36 NNNNNNNNNN .............................. TAATGCAGTCTTTCCCTGTCAGCTTCTTCATGGCTG 2644234 30 100.0 37 NNNNNNNNNN .............................. TGAAAGATATAACAGAATTACAAATCAAGAATTTTAT 2644301 30 100.0 38 NNNNNNNNNN .............................. GACCAAATTTTTTGTAAAGTATTGCAAAGCTATCACCG 2644369 30 100.0 37 NNNNNNNNNN .............................. TATGAAGACGAAGGCGGAATACAGTTTGTTGACTTCA 2644436 30 100.0 37 NNNNNNNNNN .............................. GCATTTGTAACATTCCAAGTCGTCCGCCAGTACCCTC 2644503 30 100.0 39 NNNNNNNNNN .............................. TTCTGCACCTTTTTTTAGTGCGACTTTTACATTATCAAA 2644572 30 100.0 38 NNNNNNNNNN .............................. TTCTTTGTATTCAACAACATTTTTATTGCCTCTGCTTA 2644640 30 100.0 37 NNNNNNNNNN .............................. TTGCAATACGCATATACTTGTTGTATAATATGCAATA 2644707 30 100.0 39 NNNNNNNNNN .............................. GGCAAATACACAAGGTGCTGACATGAATGCGTACCTCAA 2644776 30 100.0 37 NNNNNNNNNN .............................. CATATCATGATGTTATGCTTCATGCCATGCAAGGATC 2644843 30 100.0 37 NNNNNNNNNN .............................. TTAAAGCGCTGGATTAAAGGTAATGTTATTCGCACAG 2644910 30 100.0 38 NNNNNNNNNN .............................. AACATCTACAGAAAATTTGCAGAAATACTACAATCTTA 2644978 30 100.0 37 NNNNNNNNNN .............................. TTATTCTATGTGTTTTAGCCATGCCACAAGTTGGGAA 2645045 30 100.0 36 NNNNNNNNNN .............................. TTTTGGCGTCCATACACCAAGCAGCCTATCAAGTGT 2645111 30 100.0 37 NNNNNNNNNN .............................. CACAGGAAGAGACAGAACAACAACAAACAAATCAGAC 2645178 30 100.0 38 NNNNNNNNNN .............................. TCGTATATGGCAGACAGGAGAGAATGCAAGAAACACAA 2645246 30 100.0 39 NNNNNNNNNN .............................. TATTTGAACTACAGCCAACAAAAGCAAATACATATGCTA 2645315 30 100.0 39 NNNNNNNNNN .............................. GAAGAAAATGAGAGAAGGAAGGCGGAGAAGGATGCCATA 2645384 30 100.0 37 NNNNNNNNNN .............................. GTTGAGGCGTTAAATTCGGTTCGTTTCTGGCACCGGA 2645451 30 100.0 36 NNNNNNNNNN .............................. ATCATCACCAAACCTTGCAACGTCCACGCCTATTTC 2645517 30 100.0 37 NNNNNNNNNN .............................. ACAATGTTAGGATCTGCTCAAAAAGCAAAGAGTTTTA 2645584 30 100.0 37 NNNNNNNNNN .............................. TGAGTGCTCAAAAAGCTGAACGCATGATGAATTCTAT 2645651 30 100.0 38 NNNNNNNNNN .............................. GCATCTAATGCCTCCTTAATCTCATTCATTTCTCCGGC 2645719 30 100.0 37 NNNNNNNNNN .............................. CTTAATAACTGAAGAAACACTAGCATAAGCAATACTA 2645786 30 100.0 37 NNNNNNNNNN .............................. CTAAACCTTCAATTATATAATCAATTTCTTTATAAGA 2645853 30 100.0 37 NNNNNNNNNN .............................. TTTGCCAGCCACATCATCGTTTTAAATTCGCCATCTG 2645920 30 100.0 37 NNNNNNNNNN .............................. CAATAGATTCAACAATAACACGAATATTTACAGCACA 2645987 30 100.0 36 NNNNNNNNNN .............................. AGCTTGCAATGGCACTGGTTATTATGATGCGTGTGA 2646053 30 100.0 38 NNNNNNNNNN .............................. CAATCTATATCGACTTATGATAGAAAAGATGTAATTGA 2646121 30 100.0 36 NNNNNNNNNN .............................. TGATATTTTCGTTTCAGCCTTTCTGCATATTCATGA 2646187 30 100.0 40 NNNNNNNNNN .............................. GTGATATAAAAGATATATATGGATATACTTTTACATTAAG 2646257 30 100.0 37 NNNNNNNNNN .............................. ATCAACAGTAGTGCCTTCATCTATCAAATTTTCTAAA 2646324 30 100.0 38 NNNNNNNNNN .............................. GGCAATAGATATTTTGTGAATATTTTAGTAGATGACAA 2646392 30 100.0 36 NNNNNNNNNN .............................. AATAAATACTTATCTAGCTAATCTCGTTTTTAAGCA 2646458 30 100.0 38 NNNNNNNNNN .............................. ATTGGTATTGTGAGAGTTGGTCTTGTGTAGGTGCTAAA 2646526 30 100.0 38 NNNNNNNNNN .............................. TTTGCCTGTATTTGCTGTATCTAAGCTTTGCTGTTTTA 2646594 30 100.0 39 NNNNNNNNNN .............................. CGCCAATGCTTTAGCCTTGAGAAAAGTGAAAGAAACACT 2646663 30 100.0 36 NNNNNNNNNN .............................. GGTGGGAAGGTTTAGAAGATAGTGACAAAGACGTTA 2646729 30 100.0 38 NNNNNNNNNN ........C..................... TGGGTAGCAAAAGATGTGTGTGACATTCTAGAAATATC 2646797 30 100.0 39 NNNNNNNNNN .............................. TTTTTCTACTGCATGATGTTTCTCCCTATACGGTGCATT 2646866 30 100.0 37 NNNNNNNNNN .............................. TGTATTTGTTGATATAGTCCATGTACTGATTGCTATA 2646933 30 100.0 37 NNNNNNNNNN .............................. GAGAAAGTTAGTTGTGGTTATTATGGAGCAATTGAAA 2647000 30 100.0 37 NNNNNNNNNN .............................. CTTCGTCCCAATATTTCACACCATTTAAAGTATGAAA 2647067 30 100.0 37 NNNNNNNNNN .............................. CCTCCCCATAAGGCGTTACAATTGTAAAAGTAATACT 2647134 30 100.0 38 NNNNNNNNNN .............................. GAAGATAAAAATGGTAGCAAATGCGTTACAAACAAAAT 2647202 30 100.0 39 NNNNNNNNNN .............................. ACATAAAGATAATATAGAATTTATGTTGTTTACAGGTCT 2647271 30 100.0 38 NNNNNNNNNN .............................. TCAAATTGTTGATTTAGGGGGTGTAATGATGTTTGTGC 2647339 30 100.0 38 NNNNNNNNNN .............................. CCATCTTTGACTTGTTATTACCAATGTGATGAAGGATA 2647407 30 100.0 37 NNNNNNNNNN .............................. TTGCCCTATTCTGTGCATTCTGGCTCTTGCCTGCTCG 2647474 30 100.0 38 NNNNNNNNNN .............................. CCATCTTTGACTTGTTATTACCAATGTGATGAAGGATA 2647542 30 100.0 37 NNNNNNNNNN .............................. ATATTTGACATTACAGAAAATCAGGCTATAAATTTTT 2647609 30 100.0 37 NNNNNNNNNN .............................. CTAAAGAATCCTATGGTACTAGTCAGTATATTGATGG 2647676 30 100.0 37 NNNNNNNNNN .............................. CTACAAAAAGGTGTTTATATCAGGTACGTTTTACTTT 2647743 30 100.0 37 NNNNNNNNNN .............................. CTGTCGATAGGTGGTCTGTGGATGAGAGCTATTCCGT 2647810 30 100.0 35 NNNNNNNNNN .............................. TGATATGCTTCCCCAGGGCTTATTGGATACAGCCA 2647875 30 100.0 36 NNNNNNNNNN .............................. TGATTGAAATGGTCTCGGTGTTGCAAGTTGTCTGTA 2647941 30 100.0 38 NNNNNNNNNN .............................. CCTGATTGCTTTAATGGGCTGACGCTACAATTTGCTCT 2648009 30 100.0 38 NNNNNNNNNN .............................. AGAGTTTAAGAGCGAATGGGCGTTTATAGCAGCTGTAA 2648077 30 100.0 38 NNNNNNNNNN .............................. CATATTTCACATGTTGGATAATGAAATGACACTCGCAC 2648145 30 100.0 38 NNNNNNNNNN .............................. TTCCACACATCGCCAAATACATTGTGACCCGTTGTCTG 2648213 30 100.0 36 NNNNNNNNNN .............................. AAAGACAATGATTGATATTGAAAAAGTCTATCTCCA 2648279 30 100.0 38 NNNNNNNNNN .............................. GACTGGGCAAAAGTAACACCAAGACATGAGAGATTTAT 2648347 30 100.0 36 NNNNNNNNNN .............................. CTGTACAAGTTGTTAAGGCATAATTACAAATCAAAA 2648413 30 100.0 38 NNNNNNNNNN .............................. TGCTTTATTAGCACTATTGGCAACATTATTCTGCTGAT 2648481 30 100.0 37 NNNNNNNNNN .............................. TGCTTTACTTTATCCCAGAACTGCCGGTTAAATAAGT 2648548 30 100.0 37 NNNNNNNNNN .............................. TCATTATTTCGCTATGTTCTATGTCTCTTTTAAGCTG 2648615 30 100.0 39 NNNNNNNNNN .............................. TTCGCCGGGTTCTGCCATGTCTGTTATACCTGTAAGGTT 2648684 30 100.0 36 NNNNNNNNNN .............................. CAAGTGCTGATTTCACAGTTGCGTCAAAACCTTGCT 2648750 30 100.0 36 NNNNNNNNNN .............................. AAGCATGTTATTGTATTGTCCTGCCCTGCGTCAGGA 2648816 30 100.0 38 NNNNNNNNNN .............................. CCTTTTCTTTGGTCTGCCTGTATTTGTCCGATATGATA 2648884 30 100.0 37 NNNNNNNNNN .............................. TTTCTCCATGCTGTATTTACACTTTTTGTTTTTACTT 2648951 30 100.0 37 NNNNNNNNNN .............................. ACGTTAACGAGTACGCCGGCATACGTTACAGATTACT 2649018 30 100.0 38 NNNNNNNNNN .............................. ATCATTATTTCGCTGTTTTGTATATCTCGTTTAAGCTG 2649086 30 100.0 38 NNNNNNNNNN .............................. CCAGTTGGCAGAGCATTAGATATACAAGTGTCCGGAGG 2649154 30 100.0 37 NNNNNNNNNN .............................. CACCAGAGGATGAATCTTGGGACGCAGGCCAGGAAGT 2649221 30 100.0 38 NNNNNNNNNN .............................. TTGGCACTTTTATATATCCACCAGGGACTGCTGAATTA 2649289 30 100.0 35 NNNNNNNNNN .............................. ACTTGCGAATTTCGGGATAGATTTATAGCCTTGAA 2649354 30 100.0 37 NNNNNNNNNN .............................. AGCAACCAGCCAAAAGGTATAATCAACCAGAGTGGCA 2649421 30 100.0 36 NNNNNNNNNN .............................. TTACAACGAAGTATTCGCAACAAAAAGCATGAAGGT 2649487 30 100.0 36 NNNNNNNNNN .............................. GTTAATGCAATACACAGGCTTAAAAGATAAAAACGG 2649553 30 100.0 37 NNNNNNNNNN .............................. TGCAAGAATAGCATCTCTTTTCCTCTTCAATTCTTCA 2649620 30 100.0 35 NNNNNNNNNN .............................. AATTGAATTTGGAGGTGCATCAATTTTAGAATCTT 2649685 30 100.0 38 NNNNNNNNNN .............................. TAATAGCAATACAGAGAGAATGATTGAAAATAGTGAAA 2649753 30 100.0 38 NNNNNNNNNN .............................. ATATTATGTATTATGGTTATAGTTTTTATGTTTTGTGG 2649821 30 100.0 38 NNNNNNNNNN .............................. CCGGCTTTGCGCCGAGCCTAACTCTTATCTTCCAGTTA 2649889 30 100.0 38 NNNNNNNNNN .............................. ATATGCTTCTCCGATTCGAAAAACTTAGAATGGTATCA 2649957 30 100.0 38 NNNNNNNNNN .............................. TTATGCTATTTCACCTTATTTTTGCTCATTTATATTAT 2650025 30 100.0 37 NNNNNNNNNN .............................. ACAGGCGGGACTGATGATGAAAATGATGAGAGTTTAT 2650092 30 100.0 38 NNNNNNNNNN .............................. GAAGAGACCGCTGAAAGACCGCAAAAAGACACAAACAA 2650160 30 100.0 39 NNNNNNNNNN .............................. GAAGTCCTGCTTCTGTTTGTACGATAGTGCCTATTGGTA 2650229 30 100.0 37 NNNNNNNNNN .............................. AGTCTGTTGTGACATTAAAGAAATCAGCAAGTTTTTG 2650296 30 100.0 35 NNNNNNNNNN .............................. CAGTATTTATCAGAACTTTATGGCCTTGATAAATC 2650361 30 100.0 38 NNNNNNNNNN .............................. AATCCAAATCATACCCAACAATGATGCTGCGCAGGCAA 2650429 30 100.0 37 NNNNNNNNNN .............................. TTGCAGGGATATCAATTTGAGCTACATACCTGTCAGA 2650496 30 100.0 37 NNNNNNNNNN .............................. TTATTTTATTTATCTCAATATTTATTTCTTCATCACT 2650563 30 100.0 35 NNNNNNNNNN .............................. GAAGATAAAAAGATTATTGAATATATATTATATGG 2650628 30 100.0 40 NNNNNNNNNN .............................. CCGGTTAGTGAAGCAATGAAGTGTTCAGAGTGCGAGCAGC 2650698 30 100.0 39 NNNNNNNNNN .............................. CTTATGCATGGAAGAAGGCATATAGATGAGAGAAACTTA 2650767 30 100.0 37 NNNNNNNNNN .............................. CCTTTGGCCTCGCATGCCTGTCTTGCTGTGTCAAAGT 2650834 30 100.0 39 NNNNNNNNNN .............................. TTCATACATTGATGCTCTTAATAGCTTTATATTGCCATT 2650903 30 100.0 39 NNNNNNNNNN .............................. GTCGTTCCCTGGGCATGTTGCCTTTAGTGCCAATTTCAC 2650972 30 100.0 36 NNNNNNNNNN .............................. TCATGCTTCTTTCTTCTTTCTGTAATAGTATGAAAA 2651038 30 100.0 37 NNNNNNNNNN .............................. CTCCAACCTTCTTGACTTGCATTTTAATTTCTTCTAA 2651105 30 100.0 37 NNNNNNNNNN .............................. GGTGTCCATTCATCAGTCTTTGAATCAATTGAAATAC 2651172 30 100.0 37 NNNNNNNNNN .............................. GTATTTGCATCCGTCTTCCCTTCTGGTATTTGTTCAT 2651239 30 100.0 37 NNNNNNNNNN .............................. ATATCTTAGACATGAATAAAATATCAGAAATATTAGA 2651306 30 100.0 38 NNNNNNNNNN .............................. CTTGACGTCTGAGGATGCATTAGAAGTGATGAAAACGC 2651374 30 100.0 35 NNNNNNNNNN .............................. CGTGTGGACCATCAAGTATTAATTAACATACTTAA 2651439 30 100.0 37 NNNNNNNNNN .............................. ATTTCTTCATTTGTGGTCCTACCCAAAACATGGCCAA 2651506 30 100.0 36 NNNNNNNNNN .............................. AGGTATGCTTTCCCTGGATCTACACCAGGATATGTG 2651572 30 100.0 36 NNNNNNNNNN .............................. CTTTGAGAGAAAGTCAAAACAACGCATGGAAGAAAA 2651638 30 100.0 36 NNNNNNNNNN .............................. TGAGCCACAAGCAGCAGGAGCCAGTATTTAAAAACC 2651704 30 100.0 36 NNNNNNNNNN .............................. CAAATTGTGGTGTAGAAAGTATATCGGCTATACCTA 2651770 30 100.0 39 NNNNNNNNNN .............................. GGCTGTTTTTATATCGTTAAGCATTTTATCTGCAACTCT 2651839 30 100.0 36 NNNNNNNNNN .............................. CTATTCTGCCCCACACGAAAAAGGTGTTGCCACATA 2651905 30 100.0 36 NNNNNNNNNN .............................. CATGGCTGTAAGGTTATCTCGGTTACATCAATGGTG 2651971 30 100.0 38 NNNNNNNNNN .............................. ACAAAGCGGACTATTTGGCACGAAGAAGATTACTCACT 2652039 30 100.0 37 NNNNNNNNNN .............................. ATTTAAAATTCCTTCTTAAAAATTAAAGTTTTTATAT 2652106 30 100.0 35 NNNNNNNNNN .............................. GACATTTCAACACTGGCAGGGACAAAACAAATTGA 2652171 30 100.0 38 NNNNNNNNNN .............................. TATAGTATATTAGATGCAATATAGATATTATTACTATT 2652239 30 100.0 36 NNNNNNNNNN .............................. TAAGATTTTTCAAGAATAGCATGGGATTTGATTGTG 2652305 30 100.0 38 NNNNNNNNNN .............................. TTGTCAACACTTACATTTTTGCCATATCCAAAGTCACG 2652373 30 100.0 37 NNNNNNNNNN .............................. GTCCCTGAATTTTATATTACATTACCCCTCATATTTA 2652440 30 100.0 34 NNNNNNNNNN .............................. TCCGACTAGGCGCAAGAATACTTTTTGATGAAGA 2652504 30 100.0 38 NNNNNNNNNN .............................. TCTAATACGTCTAAAAATCTTTCCTGTTCCTCTCTGCT 2652572 30 100.0 35 NNNNNNNNNN .............................. ATCTCTAACTTTTACTGTGTTCTCCTGCTTGTTTA 2652637 30 100.0 36 NNNNNNNNNN .............................. CGCCCAAGAAGCAGGTCCTGAACCTGTAGCAACCCT 2652703 30 100.0 37 NNNNNNNNNN .............................. AGGGACTACCCAGCGTAATGGTGCGCATTCCAAAATT 2652770 30 100.0 37 NNNNNNNNNN .............................. TGGATGTATTGAGGACTTTTATCAGGCTTGCAGCAGA 2652837 30 100.0 36 NNNNNNNNNN .............................. TTAACTTTAACTTTAAGAATAAAGAATATAGCTTCA 2652903 30 100.0 37 NNNNNNNNNN .............................. GATTTAACTTATATATCTTTTGTGTATTGCCACCTGC 2652970 30 100.0 37 NNNNNNNNNN .............................. CAATTTCTTCTATAGTCAGTTTCTTTAGTTCTTCCGT 2653037 30 100.0 36 NNNNNNNNNN .............................. TGCTATGATATACATTTTTACTCCTCCTCCTTTTAT 2653103 30 100.0 36 NNNNNNNNNN .............................. TGTAGGTGCTTATGTTACAAAATATATGACTAAAGA 2653169 30 100.0 37 NNNNNNNNNN .............................. GAAATGAAATTTAATTAAGATTGAGTTTCATAATATG 2653236 30 100.0 38 NNNNNNNNNN .............................. GATGTCAAGGTTTTTTCGGAGTGAGCGTCTTATATACT 2653304 30 100.0 39 NNNNNNNNNN .............................. GTAACCTAACATCATGATTATCTTTAGTCATATATTTTG 2653373 30 100.0 39 NNNNNNNNNN .............................. GTCTATATCAACCGGCACAAAGTCATCAAAGCCAGCATC 2653442 30 100.0 36 NNNNNNNNNN .............................. GCGACTAGAACGTGAACGGAAGAAATACGCAGACTA 2653508 30 100.0 38 NNNNNNNNNN .............................. CTCGTCTCTGCTAACTTCTTGTGCTATCTTGCCACCTC 2653576 30 100.0 36 NNNNNNNNNN .............................. AAACTGTTGACATATAGGAGGTTTTATTTATGAATT 2653642 30 100.0 39 NNNNNNNNNN .............................. CTCCTCAATTTCAATTTCTACTTTTTCTTCATTACCTTT 2653711 30 100.0 37 NNNNNNNNNN .............................. CACAGTTTACCGAAACTGGCGGCGGTGGCGTAAGTCA 2653778 30 100.0 36 NNNNNNNNNN .............................. TGACAATACGACATAATCTTGCCCATTATTAACCGG 2653844 30 100.0 35 NNNNNNNNNN .............................. TTTTTTATATGTCCGCTCATACTATTACCTCCTAA 2653909 30 100.0 38 NNNNNNNNNN .............................. GTAGAAGGCGAAAGCGATGCTCAAACATTGTGGCTCTA 2653977 30 100.0 38 NNNNNNNNNN .............................. GTCACTGTCTTCTATATCTATTTGCCTTGTTGTTGCTT 2654045 30 100.0 38 NNNNNNNNNN .............................. TAACCATTGAGTTAACAACATTACTTCGTGGCCCTTCG 2654113 30 100.0 35 NNNNNNNNNN .............................. GTTGTGTATGCAGATAGAGACGGAATTATACAAAT 2654178 30 100.0 35 NNNNNNNNNN .............................. TCTCAAGCAGCCGACGCAGTAGTTACAGTCCCGCA 2654243 30 100.0 36 NNNNNNNNNN .............................. CTGGCGAACTGAGATATGAGTATCCTGACAATCCGC 2654309 30 100.0 38 NNNNNNNNNN .............................. TCAAACCTGCGTCTTGTAGTACCTGTTGTGCAAGTGTA 2654377 30 100.0 39 NNNNNNNNNN .............................. AGACCATAGCAGCAGGGTATCACAATGGCAGTGGATATG 2654446 30 100.0 38 NNNNNNNNNN .............................. AGCAATTCGGGAAGGCAAACTAAGTATCACTGATTTCG 2654514 30 100.0 37 NNNNNNNNNN .............................. GTAGCAACAACTGGATACAATAGCTTTATTATTGCTA 2654581 30 100.0 38 NNNNNNNNNN .............................. CAAAATACCAAAAGTTTTTAGAGAAGATTTGCAACAAG 2654649 30 100.0 38 NNNNNNNNNN .............................. GTAAAAAAGAGGTTTAACTAACCTCTTTTTTTGTGTTA 2654717 30 100.0 35 NNNNNNNNNN .............................. AAATATAACCAATGACAATCGCAACTATTTTCCAA 2654782 30 100.0 37 NNNNNNNNNN .............................. CAATTACCAGGTTAAGTGTTTCGGGCACTTCACCAAG 2654849 30 100.0 37 NNNNNNNNNN .............................. TTTTTTATTTTTTTTAAAAAACTTATTGACAAAATCA 2654916 30 100.0 38 NNNNNNNNNN .............................. CAGGTTAAAACAGAAGCAGAAAAACGAAAGAAGATTTT 2654984 30 100.0 37 NNNNNNNNNN .............................. TTATATTCTTCTTCTGTCATAGTCACAAATTCAGCAG 2655051 30 100.0 36 NNNNNNNNNN .............................. TGGGCAATTTGAATGGGAAGAAATAAAATAAACAAC 2655117 30 100.0 36 NNNNNNNNNN .............................. TTGTGATGTCTTTGCCTTTATATCTTATAGTAGCGG 2655183 30 100.0 36 NNNNNNNNNN .............................. CCCTGTTACGGAAAACTTTTCTTGTACGCCTGAAAG 2655249 30 100.0 39 NNNNNNNNNN .............................. TGTCTATTATTTTCATTATCCTCACTTCCTCATTACTGC 2655318 30 100.0 36 NNNNNNNNNN .............................. TGTTATCGTGTTATCTTGTCCCGCATCTGGATAGGT 2655384 30 100.0 37 NNNNNNNNNN .............................. GGACAACTAGATTTATCTGTTTCTCTTTTATTATCTC 2655451 30 100.0 37 NNNNNNNNNN .............................. TACGTTCAACTTTTGCTAGCCATGTGATTTTTTTTGC 2655518 30 100.0 37 NNNNNNNNNN .............................. CTGATTTCCAAACAATCATGAATACAATAACGGCGAA 2655585 30 100.0 37 NNNNNNNNNN .............................. CAGCATTGCAAACTATGGACGCCAAGGTGACAATGGA 2655652 30 100.0 38 NNNNNNNNNN .............................. ACATATAGCAATGATAGCTGAAGCGGGACCAGAATCAA 2655720 30 100.0 38 NNNNNNNNNN .............................. AAAAAACTATTTGATATGATGGTTGTTTATTCTTTTAA 2655788 30 100.0 38 NNNNNNNNNN .............................. TTTTTAACTGCTTTAATAGCAATATTCTTTTTATCATT 2655856 30 100.0 37 NNNNNNNNNN .............................. ATGGCATTAACACGTATAGGATTAGCAAGGCAACAAT 2655923 30 100.0 37 NNNNNNNNNN .............................. CATTGAAATACAACCTTATAAAATTGATAATAAAAAC 2655990 30 100.0 38 NNNNNNNNNN .............................. TGCACTATATCCAGCTCTTATTGCCGCTTGTGTGGCAT 2656058 30 100.0 38 NNNNNNNNNN .............................. CAATTAACGTCTGAAACTCAAATGTTAGACCAAAATGT 2656126 30 100.0 37 NNNNNNNNNN .............................. TTTATATGTCGCAATGGAGGAAAATTAGAAGAATGGA 2656193 30 100.0 37 NNNNNNNNNN .............................. GTGTTTCATTGACTTTGGAACGCTTTCTTCCCACAGA 2656260 30 100.0 39 NNNNNNNNNN .............................. AATTAGAATAAAAGGAGGGTAAAAAATGGATAAATGGAA 2656329 30 100.0 36 NNNNNNNNNN .............................. GAAATAGGAACAGCACAGATAAGCAAGTGCAGAATA 2656395 30 100.0 36 NNNNNNNNNN .............................. TCCTATTAGAACGAGTATATTCACGACTATTAAACA 2656461 30 100.0 37 NNNNNNNNNN .............................. AATACTTACTTCATTCGCAAAGGCGACAGTTTAAAAA 2656528 30 100.0 38 NNNNNNNNNN .............................. GAAAGAAGGTGAAAATATGACTGTCGGTGAATTAATCG 2656596 30 100.0 37 NNNNNNNNNN .............................. GAATTTGAACTATTACAAGGCAATGTAAATACAGTTG 2656663 30 100.0 37 NNNNNNNNNN .............................. ACGCTTCCTACGCCCTGTGGTGTTAGTTTTTCAGGGG 2656730 30 100.0 39 NNNNNNNNNN .............................. TATAATAGAGTCGTTAAGAAGTCAACACGCATTAGCTTA 2656799 30 100.0 37 NNNNNNNNNN ............G................. TAACTTTGGTAACAATCGATTGCAAAGGATTTGAGAT 2656866 30 100.0 38 NNNNNNNNNN ............G................. CAACAAGCATATTTAAAACAGTCATTACGCCTTTAGCA 2656934 30 100.0 37 NNNNNNNNNN ............G................. TAAACTTTAGATTCGTGGAAAAAACTAAAATTTATAG 2657001 30 100.0 39 NNNNNNNNNN ............G................. AGACTCTATTATGTCTTTTAAAATGTTGCCTGCACCTAC 2657070 30 100.0 37 NNNNNNNNNN ............G................. AAGAATATGACAGAAACGTTACTGTGTTCCCACAAGA 2657137 30 100.0 39 NNNNNNNNNN ............G................. TAGTTTAGCAAAAACTGCTCTGACATACAGGACAATGCT 2657206 30 100.0 38 NNNNNNNNNN ............G................. CATATAGAGGAGGTTTAAAAAATGCAAAAGTGGATCGT 2657274 30 100.0 35 NNNNNNNNNN ............G................. GCAGAAATAAGGGCAGAAATAAGGAGAGATACAAA 2657339 30 100.0 37 NNNNNNNNNN ............G................. CTAGGCAAGGTGACTGCTTCCGCTGGATTATATATTA 2657406 30 100.0 37 NNNNNNNNNN ............G................. CTTGAGTGTTTAGGACAAGCAACGGCTTCTCAAAAAA 2657473 30 100.0 37 NNNNNNNNNN C...........G................. ATTCAATTTTAGGAACTCTCATATTATTTTCATATCG 2657540 30 100.0 38 NNNNNNNNNN C...........G................. CATGTAAACGATTGATTTTGACTTATAATGAATACTTT 2657608 30 100.0 37 NNNNNNNNNN C...........G................. AAACAATAGCGTCAAAAAATGGCATAAAAGATCCCAA 2657675 30 100.0 37 NNNNNNNNNN C...........G................. CTATTCAAACAGGTACAAATTGGACAATGTATCTGGG 2657742 30 100.0 36 NNNNNNNNNN C...........G................. TCTTGCAAGTATAAAGCACCAATTGCAGGATTTATA 2657808 30 100.0 37 NNNNNNNNNN C...........G................. AAGGAATATGAAGATTATATTTCTGAAAATGATTGGT 2657875 30 100.0 36 NNNNNNNNNN C...........G................. TATTCATATATAAGGTTATTTAGTTCATCTAAATTT 2657941 30 100.0 36 NNNNNNNNNN C...........G................. CACATTCATCAGGATCCGCCCAAATTTCACTTCCAG 2658007 30 100.0 38 NNNNNNNNNN C...........G................. CAGATGGTATATTGATTTTGGTAATGTAGCAGGTAATG 2658075 30 100.0 37 NNNNNNNNNN C...........G................. AAGGAGGAATAAAAAAAAATGTTTTATGATGCTACAG 2658142 30 100.0 39 NNNNNNNNNN ............G................. GGCATTACGTTTTACACAAGATACATTAAAATCATATTT 2658211 30 100.0 36 NNNNNNNNNN ............G................. ATCTCTCCTTCAAATTTTATTGCCTGCCAAGCAGGT 2658277 30 100.0 36 NNNNNNNNNN ............G................. TTGGATGGTAAATACCTTCGTTGTAATTTCTTCTTG 2658343 30 100.0 36 NNNNNNNNNN ............G................. TGTCGTTGCCATTTTATTTCCCTCCTTATTGCTCTA 2658409 30 100.0 37 NNNNNNNNNN ............G................. CTCCTTTACTGTTTTGCCTGCCATTCTTCAAGCTTGC 2658476 30 100.0 38 NNNNNNNNNN ............G................. GGGATACCAACTGCGGATACAATCTCTGTTTGCACCGT 2658544 30 100.0 37 NNNNNNNNNN ............G................. CTTTGAGGTTATGCATAAGTCTCTTAAAAAGTATTTT 2658611 30 100.0 36 NNNNNNNNNN ............G................. GTAGGCTTTTAGCCTACTCTGTTGGAGGTGTTTCTA 2658677 30 100.0 36 NNNNNNNNNN ............G................. CTACAGAGAAAAGATAGAACGCATGATTCGTGAAAG 2658743 30 100.0 37 NNNNNNNNNN ............G................. GATTTGCCTGATACTGATTCAGGTATTTCTGATGTTT 2658810 30 100.0 37 NNNNNNNNNN ............G................. TATCTGTATAGTTATTCTCTGCCTCCGTCCCAAGCCA 2658877 30 100.0 35 NNNNNNNNNN ............G................. AGGACAGTGGACTAATCCTATTACGCTAGATTTGT 2658942 30 100.0 36 NNNNNNNNNN ............G................. TAATGGGAGGCGTGATAGCCTCTTTAATTATGCTTA 2659008 30 100.0 36 NNNNNNNNNN ............G................. TGCAAGTGTAGCAACTATAAATGAGTGCAAAGAATT 2659074 30 100.0 36 NNNNNNNNNN ............G................. CCTTCAGGCACAAGGCGTCAAAAATGTCAGTTTTGG 2659140 30 100.0 36 NNNNNNNNNN ............G................. TCTCAAACTCGCAAAAATAGACATTACGCCAGAGCT 2659206 30 100.0 37 NNNNNNNNNN ............G................. ATTCAAGGCCCTTCGGGGCCAATTTTTTATTTTCTTT 2659273 30 100.0 37 NNNNNNNNNN ............G................. GAAAGCATCAAAAAGCTTGCTGGAACTAAATAAATTT 2659340 30 100.0 38 NNNNNNNNNN ............G................. GGGTGGAACTGGTAGTACTAGTGGCTCTTTGAATTTTG 2659408 30 100.0 36 NNNNNNNNNN ............G................. ACAAAACACTATTAGAAAAACTTAAAAGCATGGAGG 2659474 30 100.0 38 NNNNNNNNNN ............G................. AAAACAAATTGGAAAGCGTCAGATGTAGTTCAACCTGC 2659542 30 100.0 37 NNNNNNNNNN ............G................. TAATCTTTACCTGCCTGTTAGGTATGTTCCACTTAGC 2659609 30 100.0 37 NNNNNNNNNN ............G................. CTTTTTCGTCTAAATCTTTATCATTCCAATAATCGTA 2659676 30 100.0 37 NNNNNNNNNN ............G................. GAATGCTCAAAAAGGTATAGTTGAGCTATCTAAGAAG 2659743 30 100.0 35 NNNNNNNNNN ............G................. CAACTCGAAGCCAAGCCCTACGCCACAAGCTTCAT 2659808 30 100.0 39 NNNNNNNNNN ............G................. GTCTATGTTGTATTCTGTACTATCCAATCCTGCGTCTTG 2659877 30 100.0 38 NNNNNNNNNN ............G................. GCATATAGCAGCAGTGATAGTGTGTTATATCAAATACC 2659945 30 100.0 37 NNNNNNNNNN ............G................. GCAGTTATAGCAGTTGCTATTTTGTTTTTTCCTGCCG 2660012 30 100.0 36 NNNNNNNNNN ............G................. ATCGGCTGACATCTAATACTACCTCATACGCTGTAT 2660078 30 100.0 37 NNNNNNNNNN ............G................. GTATCGAGAGCAAAGCTGGACGCTCTAAAAGAAATAA 2660145 30 100.0 37 NNNNNNNNNN ............G................. CATTGCCAGGGACTATTTTACCACAAGCTGGTTTAAT 2660212 30 100.0 37 NNNNNNNNNN ............G................. GCAACGGTTGGAACAAAAAGTAGACGGCATATATACA 2660279 30 100.0 36 NNNNNNNNNN ............G................. ACGTCTTTTGGGTCATGCAAAAATATCAACTACTGC 2660345 30 100.0 38 NNNNNNNNNN ............G................. CCAGAATCTTGATGAACTTATACAAAAAGCTCACTCGA 2660413 30 100.0 37 NNNNNNNNNN ............G................. ACTTATAGGTATTGGCCTTTAGATGCGAACATAACAG 2660480 30 100.0 37 NNNNNNNNNN ............G................. CGTACTTTCAGGCAAAACCTTCTATCAAGGTGGAAGT 2660547 30 100.0 37 NNNNNNNNNN ............G................. ACTGTGATATTTGTAAATACTTCTCCACCTGTGCCTG 2660614 30 100.0 38 NNNNNNNNNN ............G................. TCACTCGATAGCTTTCAGAGTTAAAAAAGAAGAAGCTC 2660682 30 100.0 38 NNNNNNNNNN ............G................. TGTAGCTATCGCTGCAAGGAGATACCAAAGGGGCGAGA 2660750 30 100.0 36 NNNNNNNNNN ............G................. GTGAGCAGGTATTGAATGGTACTCGATACTTGCTTA 2660816 30 100.0 35 NNNNNNNNNN ............G................. TTTTCTCCCCCATTTGCGAGCCTATACACTTATAG 2660881 30 100.0 37 NNNNNNNNNN ............G................. GTAAAAGAGTTATATCGTGTGGTTATACCTGGAAGAC 2660948 30 100.0 36 NNNNNNNNNN ............G................. TTTGCTTCAAATTTGTATCAATATAGGCTTTAACGT 2661014 30 100.0 37 NNNNNNNNNN ............G................. AATATGGCAATAGCAGGCAAAGTAGGAGCGGTATATG 2661081 30 100.0 36 NNNNNNNNNN ............G................. ACATAGCAAATACTACGGGAACAAAATACAAAATTA 2661147 30 100.0 37 NNNNNNNNNN ............G................. AAGAGATAGTAGGCGTCATAGTAGATCATCATCCTAT 2661214 30 100.0 1 NNNNNNNNNN ............G................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 267 30 37 GTTTCAATTCCTCATAGGTAGGCTAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [76.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [31,102] Score: 0.18/0.18 # # Final direction: R [0.27,5.46 Confidence: HIGH] >NC_019968 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 21239 32 100.0 33 NNNNNNNNNN ................................ CTCTCGGAGGTACAATGACGTGTCACAAGATCC 21304 32 100.0 33 NNNNNNNNNN ................................ CACCGCCATAAGAGGCAGCAGAAAGAGCAGTCG 21369 32 100.0 34 NNNNNNNNNN ................................ ATTTAGCAATTAAAAATGTAAAGAATTATGGCAA 21435 32 100.0 32 NNNNNNNNNN ................................ CCCTCAAAGGAGGATGCGAAGGCCTATGCTAA 21499 32 100.0 34 NNNNNNNNNN ................................ TGCTGCCTCTTATGGCGGTGGAAATGTCTATCCA 21565 32 100.0 33 NNNNNNNNNN ................................ CGTTAAGGACTTGACCGACGGGGAGCACGACGC 21630 32 100.0 32 NNNNNNNNNN ................................ TTTTTTTGAAAGATTTGTCAAATCTTTTTGCG 21694 32 100.0 32 NNNNNNNNNN ................................ TGTGTTTAAAATTGATTATCGCTCTAAGCTTA 21758 32 100.0 32 NNNNNNNNNN ................................ AATCCATAATCGTCTTGATATTTTACGTTTGG 21822 32 100.0 33 NNNNNNNNNN ................................ CGTGCGGTGTGCGTGCGATGTTTAAGATTTTTT 21887 32 100.0 33 NNNNNNNNNN ................................ TGTGTTTAAAATTGATTATCGCTCTAAGCTTAA 21952 32 100.0 32 NNNNNNNNNN ................................ CTAAGTGTAAAAAAATTGGAGGAGATATTAAA 22016 32 100.0 34 NNNNNNNNNN ................................ TAATCGTGCCGTGCGGGATTATGTCCGCACGGTT 22082 32 100.0 33 NNNNNNNNNN ................................ AATCGTCTGGTATTGGTGCTTGTATTTTGGATG 22147 32 100.0 33 NNNNNNNNNN ................................ TTTTCGTTTGCAAAACGATCGCTCATGCGCAAG 22212 32 100.0 34 NNNNNNNNNN ................................ TAATCAAGCCAAGGAGGGAAAGCGTGAAAAAATA 22278 32 100.0 32 NNNNNNNNNN ................................ CAAGGAACTGCCAATACTTTTGAATCGCCTGG 22342 32 100.0 33 NNNNNNNNNN ................................ TTGTAAGTGTAGTCTCCGCAGAGAAACTTAAGC 22407 32 100.0 32 NNNNNNNNNN ................................ TTTCCGCTGATGCTAAGCTGGTCCAACCTCTT 22471 32 100.0 35 NNNNNNNNNN ................................ AGCTTCGACATATGGGGCTGTGCTGCCGTAAAAGT 22538 32 100.0 32 NNNNNNNNNN ................................ CTTTGTGGGGAACGCTCCGGCAAAACGGTACA 22602 32 100.0 34 NNNNNNNNNN ................................ CACAAATACTGGCCATCTACAACAAGTTGCTAAA 22668 32 100.0 34 NNNNNNNNNN ................................ GCTGCTGGCCCCCTGCACCAGCGAGGAATTGGAG 22734 32 100.0 33 NNNNNNNNNN ................................ GGAACATGCGGGAGCAGCAGCGCAGCATCCAGG 22799 32 100.0 32 NNNNNNNNNN ................................ CGTTAACGCCAATGCACTAACACCCAACGGAT 22863 32 100.0 34 NNNNNNNNNN ................................ TGCCGCATCTTACGGTGGTGGAAATGTCTATCCG 22929 32 100.0 33 NNNNNNNNNN ................................ ATACTACGTTGCGGACTATGTTGCTGGGAACAA 22994 32 100.0 33 NNNNNNNNNN ................................ ACAGTATTTAAAAGAAAAACATGTCCAAGTTAA 23059 32 100.0 34 NNNNNNNNNN ................................ CAGAACGTGCGTAACATGCGAGAGCAGCAGCGTA 23125 32 100.0 34 NNNNNNNNNN ................................ TGGAAGCTACTCATAACATCAGCAGCACCTTGAG 23191 32 100.0 33 NNNNNNNNNN ................................ CGTGCAGTCTATGCGTCAGGCGTTTGCTTTGGA 23256 32 100.0 33 NNNNNNNNNN ................................ AGGCGACAAAGTCGGGTCATAAATCTGCGTAAG 23321 32 100.0 32 NNNNNNNNNN ................................ ACTAATAAAGAGGTGGTACTCGTACACCTGAT 23385 32 100.0 34 NNNNNNNNNN ................................ TTGAACTGATGCGACTCGTCCACGAAAATGTGGT 23451 32 100.0 34 NNNNNNNNNN ................................ GGTAGCCGGAGCCAGCGCACCTGTGGCGAATTGA 23517 32 100.0 34 NNNNNNNNNN ................................ GGTAGCCGGAGCCAGCGCACCTGTGGCGAATTGA 23583 32 100.0 32 NNNNNNNNNN ................................ TCAAGGATGGTGGTCGTGAACACCGTCATGGA 23647 32 100.0 34 NNNNNNNNNN ................................ CTTGATGACATTGTGGTCCACGCCGGCACCCAGC 23713 32 100.0 34 NNNNNNNNNN ................................ CCATAGCTTCTCCTCCTTCCAGTCTTTGTAAGCC 23779 32 100.0 33 NNNNNNNNNN ................................ ACGAATGAGGTTCGATGGAAGGTCGGCAATGAA 23844 32 100.0 1 NNNNNNNNNN ....T........................... NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 41 32 33 GTCGCGTCTCACGTAGGCGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [6,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.30,-4.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [169,383] Score: 0.18/0.18 # # Final direction: F [5.55,0.55 Confidence: HIGH] >NC_019977 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1144393 37 100.0 35 NNNNNNNNNN AG..T..C....T...........T.....T.CG..T GTACAAGAGCAAACTTGCTTTTTGCAAGAAAAAGT 1144465 37 100.0 66 NNNNNNNNNN ..................................... TTATCGGCAAAGTGACTGGTTTTATGCAAACTTGTAATGATTTTATTTTTGTTTTGGTGAAAGCAA 1144568 37 100.0 42 NNNNNNNNNN ..................................... CAGAAGACTCGGATTCGGATATCTCCAATAACCGTCTCGTAA 1144647 37 100.0 43 NNNNNNNNNN ..................................... TGCTAGGGCTGTAAAATATTATGGAGAAAAGGAAGATAGCGAA 1144727 37 100.0 37 NNNNNNNNNN ..................................... CCAGACTAGGGAATTTTTAAAAATCGGGCGGAAGGTT 1144801 37 100.0 41 NNNNNNNNNN ..................................... GAGACGGCTCATGCCCGTTAACCCCAAGTTGAGCAACAAAG 1144879 37 100.0 36 NNNNNNNNNN ..................................... TGCATACGGCAGGGTAGGTATAGGCACAGTGGACAG 1144952 37 100.0 36 NNNNNNNNNN ..................................... TAGTTATCGCCGTGAAGATCCTAGGAGTTAGTTTTT 1145025 37 100.0 41 NNNNNNNNNN ..................................... GTGAAAATAAAAGATCGAAACCAAGGACGACGCAGGGTCAA 1145103 37 100.0 34 NNNNNNNNNN ..................................... TCATCTAGTGACAATAACAGTGTCACGAGGGTAA 1145174 37 100.0 39 NNNNNNNNNN ..................................... AAGAAGTATATATGCTCATGATTGCTCAGATGAAAGAGA 1145250 37 100.0 37 NNNNNNNNNN ..................................... AGGATGTTTGGGTGGCTATAAAGACCGCCGTCGAAGC 1145324 37 100.0 35 NNNNNNNNNN ..................................... CCGGCAAACGCATGTATTATAATGCCTATGGATAA 1145396 37 100.0 36 NNNNNNNNNN ..................................... CCAATATGCCAGCATCGCCAAAACAACTTTACTTGT 1145469 37 100.0 44 NNNNNNNNNN ..................................... ATTGATGGTGAGGGTAAGCGCAAAAATACGGTTGCAACTATAAT 1145550 37 100.0 35 NNNNNNNNNN ..................................... TGCTTGCTCTGGTAATACCTGTAGCCTCAGCGAGT 1145622 37 100.0 37 NNNNNNNNNN ..................................... TTGATATGTCTATTACCATTAAATGACAACGATACAT 1145696 37 100.0 1 NNNNNNNNNN ..................................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 18 37 39 GTTTCAATCCTTGTTTTAGTGGATCATGCTCTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.16%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.90,-3.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [246,346] Score: 0/0.18 # # Final direction: R [0.27,5.28 Confidence: HIGH] >NC_019977 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1149272 37 100.0 38 NNNNNNNNNN ..................................... ATTGTGTCATTTCGACATGTATCATTTCTATGGGTTCT 1149347 37 100.0 37 NNNNNNNNNN ..................................... TCATAAAACTCCTGCGGCGTATCCAAATCCGACCCAA 1149421 37 100.0 35 NNNNNNNNNN ..................................... GTGATGCACTGGGGCTTTAAAAAATTCCGTAACCT 1149493 37 100.0 36 NNNNNNNNNN ..................................... GGTTCTTCTTGTAGCGCTATAATAAAATCTGTGAAC 1149566 37 100.0 34 NNNNNNNNNN ..................................... CATCAAACTCCTGGGAATTAATAACAACATTTTC 1149637 37 100.0 39 NNNNNNNNNN ..................................... AATTTCCAAGATGCATGGAAATTAAATCATCTATTACAC 1149713 37 100.0 52 NNNNNNNNNN ..................................... ATCCTAAACCAGGAATAAAAAGTTCTTCAAGCGAATTACCTTCCAACTTTGT 1149802 37 100.0 1 NNNNNNNNNN ................................T.TCT NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 8 37 38 ATTCGAGAGCAAGATCCACTATAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.16%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.90,-2.90] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [58.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [93,76] Score: 0/0.18 # # Final direction: F [4.91,0.27 Confidence: HIGH] >NC_020063 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2974321 28 100.0 32 ACCATGACTG ............................ CTACAAGTTACTGGCGCATACAAACCGGGTGT 2974381 28 96.4 32 AACCGGGTGT ...............C............ TGGAGGGCATTATCACGGGCGTCTGTGAGTCT 2974441 28 100.0 32 CTGTGAGTCT ............................ GTCGTGATGCGAAACGGCAAGATCCTCGGCTG 2974501 28 100.0 32 TCCTCGGCTG ............................ GTTCGTCGTCTCAATGGCGCTGGCCGCTGTCT 2974561 28 100.0 32 GCCGCTGTCT ............................ ATTATGCTGTTGGCGGTGATGTTATTTGTATC 2974621 28 100.0 32 TATTTGTATC ............................ GCGGGCCAACACACCAGCGGCCTTTAAATTCA 2974681 28 100.0 32 TTTAAATTCA ............................ TGCTGAATCAGCTGATCGCAAAATGCTTAACA 2974741 28 100.0 32 ATGCTTAACA ............................ TTGTGTTTGATTACGCGATGCATTATCTATGA 2974801 28 100.0 32 TTATCTATGA ............................ TAAGGGGATCCCCGATCGCTCGCCGGAGGACT 2974861 28 100.0 32 CCGGAGGACT ............................ CAGCGGCCGCAGCGAGCCAGGCAGCGTCTAAA 2974921 28 100.0 32 AGCGTCTAAA ............................ CAGATGAGTTATTTTATGGGCGCGTTTATATT 2974981 28 100.0 32 CGTTTATATT ............................ ACTGTATTATCAGTGAATCATGTACAATCTTA 2975041 28 100.0 32 TACAATCTTA ............................ AAAGAGTTCCGCCGCTGGGTGTTAGACATTCT 2975101 28 100.0 TAGACATTCT ............................ TGAACCCTTT ========== ====== ====== ====== ========== ============================ 14 28 32 TTTCTAAGCTGCCTGTACGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,8] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [127,281] Score: 0.18/0.18 # # Final direction: R [0,2.1 Confidence: HIGH] >NC_020055 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2574826 28 100.0 32 TAAAATTGTA ............................ ATTTACGGCCCAAACCTTCAGCAGCCGCCAAG 2574886 28 100.0 32 AGCCGCCAAG ............................ TTTGCCCATAGCGAAGCAAAGCGCACTATGTG 2574946 28 100.0 32 GCACTATGTG ............................ TCCTAAGATTGGCCCCTTGAAGATTGGCCTTT 2575006 28 100.0 32 ATTGGCCTTT ............................ TACATGCTCTTGGGGAAAGCTTTAAGAAGAAT 2575066 28 100.0 32 TAAGAAGAAT ............................ TTTAACCGGGAATTTAGCCTTGCTCATTTGCT 2575126 28 100.0 32 CTCATTTGCT ............................ TCAAGGAGGCGCGGAAGATCGTTGATGCAGAA 2575186 28 100.0 32 TGATGCAGAA ............................ CTTGAGGTCAGCGAAGACTTCGAGTTGACGAA 2575246 28 100.0 32 AGTTGACGAA ............................ GCAATGAAGTTGAAAAAGGCATGTTCGTTTAC 2575306 28 100.0 32 GTTCGTTTAC ............................ TTGCGGGCTGACCGGTTCAGCAAACGTTAGCG 2575366 28 100.0 32 AACGTTAGCG ............................ TCAACAGACCTATAAAAAGTATGACTTACTTT 2575426 28 100.0 32 GACTTACTTT ............................ TCTGCAACGGCAAGGGTATCGCTCACTTTCAC 2575486 28 100.0 32 TCACTTTCAC ............................ AACACGCAGAAGCTCTTTCTTACGAAAATCAG 2575546 28 100.0 32 CGAAAATCAG ............................ CGCAGATCGAAAGCATCAGCAAGACCGGAAAC 2575606 28 100.0 32 GACCGGAAAC ............................ TACTCCCAATCTTTTTATGTAGCTGAGTATCT 2575666 28 100.0 32 CTGAGTATCT ............................ GTGATGTGATTTGAACCCCGTTCCATGTCAAA 2575726 28 100.0 32 CCATGTCAAA ............................ TTAAAAGAGCGGGCATAGCAGTTAATAATTAT 2575786 28 100.0 32 TAATAATTAT ............................ ATATCGGGTGGTGTTCGTCTTCCGGGAGAATT 2575846 28 96.4 CGGGAGAATT .....................C...... GGCGCGCGGGAAACAGCAATAGCACTGCTCCC ========== ====== ====== ====== ========== ============================ 18 28 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 92% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [71.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [189,88] Score: 0.18/0.18 # # Final direction: F [2.1,0 Confidence: HIGH] >NC_020064 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1981450 28 100.0 33 ACTCTAACAG ............................ GCAGTATCCGCTTAATGATATTGCCCAGGCGCG 1981511 28 100.0 32 CCCAGGCGCG ............................ GAAAACCCACCAGCCATGCTTCGCGATGGTTA 1981571 28 100.0 32 GCGATGGTTA ............................ TCGTCGATATCCAGTTCGCGGCGCTCGGTAGC 1981631 28 100.0 32 GCTCGGTAGC ............................ CGGCGACATACCCGCTACTGGCGCAGGCGTAC 1981691 28 100.0 33 GCAGGCGTAC ............................ TTGCTGGATGACGCCAATCACCCCGGGGAAAAG 1981752 28 100.0 CGGGGAAAAG ............................ AATGTTTGGGAGTCGATAAAAAAAGGCTGGGC ========== ====== ====== ====== ========== ============================ 6 28 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [281,256] Score: 0/0.18 # # Final direction: F [1.24,0 Confidence: HIGH] >NC_019978 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 935878 37 100.0 39 ATTTCGCGCG ..................................... ATGACGGGCCAACTGCTGAAGATGTAGTTGATGACTTCT 935954 37 100.0 35 GATGACTTCT ..................................... CACCTAATTCAACCGTCTTAACGTCGCTATTAGAC 936026 37 100.0 38 GCTATTAGAC ..................................... CTAGCTTGTAATTCTTCTTTGATTATTTGAGTTGTTCC 936101 37 100.0 35 GAGTTGTTCC ..................................... ACTATATCACCTTCGTCTCCCGAAGTTTCAACAAG 936173 37 100.0 37 TTTCAACAAG ..................................... TTTAACTATATCAATCGGCTCTTCAAAAGGTGATAAT 936247 37 100.0 39 AGGTGATAAT ..................................... TTATATTATTAATCCAATCTAATCTGCAATAATCAGTAC 936323 37 100.0 36 TAATCAGTAC ..................................... ATGAACTGACCTATCCAACCTTGCTCGTTAATATAT 936396 37 100.0 36 GTTAATATAT ..................................... TTTATAAAACCACCACCATCATTGGCTTTTTTAAGA 936469 37 100.0 36 TTTTTTAAGA ..................................... TCAATAGTTAGATAATCTATTGCAGTAGTTACAATA 936542 37 100.0 35 AGTTACAATA ..................................... ACTCCATAACTATAACCAGATAAGTCGATATTAAA 936614 37 100.0 37 CGATATTAAA ..................................... CCAACTAGAACCAAAGCTATTGTTAATTACGTCAGTC 936688 37 100.0 37 TACGTCAGTC ..................................... GTAAATATTAGGTCTGCATTATCTATATTATTAACTT 936762 37 100.0 37 TTATTAACTT ..................................... GATATTAGCAATCAATGGATTATAGATAAATCTTTAG 936836 37 100.0 35 AAATCTTTAG ..................................... GTCTATAAAATTGAATATACTGATTTTAATACTAA 936908 37 100.0 36 TTAATACTAA ..................................... GCAGCTTGCAGCTCCAACCAATATCTGAGCATTGAA 936981 37 100.0 38 GAGCATTGAA ..................................... TTGTTGTTCCTGGAGATCATGATCATAGCTTATGATAC 937056 37 100.0 41 CTTATGATAC ..................................... GATCCAGTTGAAGATGACCCTAGTGGACCAGTAGAAGAATA 937134 37 100.0 38 TAGAAGAATA ..................................... ACGCCTGTCAAGGTGCTGAATGTTCGAGGTGGCAAGAT 937209 37 100.0 37 GTGGCAAGAT ..................................... CTGACCTTAGCCCACATACATTACACCTCCTATAGAA 937283 37 100.0 38 TCCTATAGAA ..................................... TGTTCATTAACACAAGATACTATTGTAGACAATGGATA 937358 37 100.0 38 ACAATGGATA ..................................... ATATTCTACCATTAGTTGTATTGTCAACAGGGTCAGAA 937433 37 100.0 37 AGGGTCAGAA ..................................... ACGCTTGAGACGTCGCCTAACTCTACCTCTGCATTAA 937507 37 100.0 38 TCTGCATTAA ..................................... ATCTACCGAGAAAAAGGACTCAGCAACGATAATTACTT 937582 37 100.0 37 ATAATTACTT ..................................... ACTAACTTGTTGCCGATTGAAGGAGAGGCTAATACTG 937656 37 100.0 37 GCTAATACTG ..................................... GCAATGCAGGAGTTAATGAAGTCGCAGGAGTAGTTCA 937730 37 100.0 39 GAGTAGTTCA ..................................... ATTCAATCGCCTTACAACAAGCAGTAAGGGATTTAGATA 937806 37 100.0 37 GATTTAGATA ..................................... TATATTTCAGAATTGCATAATCGTACAGCAGAAGAAG 937880 37 100.0 37 GCAGAAGAAG ..................................... ATTGCATTGAAAATATTCTCCCAAATGTAAGTTATAG 937954 37 100.0 38 TAAGTTATAG ..................................... CAAAAATTGATAGTTTCAGCCTAATATGATATAATAAA 938029 37 100.0 36 ATATAATAAA ..................................... TTTAATATTAAAAACGGATATGCAATTCAAGTTTTA 938102 37 100.0 37 TCAAGTTTTA ..................................... ACTCACCACCTACCTTATCAGCTAGTTTTAGCAACAA 938176 37 100.0 39 TTAGCAACAA ..................................... AGGAAAGTATGCAACTAGTTATAGAACCCCAGTAGATTA 938252 37 97.3 CAGTAGATTA ....................................C AGTTTAATA ========== ====== ====== ====== ========== ===================================== 33 37 37 GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:59.46%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.10,-4.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [266,411] Score: 0/0.18 # # Final direction: F [0.78,0.27 Confidence: MEDIUM] >NC_020064 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 458396 28 100.0 31 AACTGCAACA ............................ ATGCCGCCGACTCGCTGCTGGGCAGCAGCGT 458455 28 100.0 32 GCAGCAGCGT ............................ TTAGTCGTACCCTTAGTATCTTATCTATGTAC 458515 28 100.0 32 ATCTATGTAC ............................ ATACCCGGCAGACGCGCATAGTTGTCGAACTC 458575 28 100.0 32 TGTCGAACTC ............................ AAAACCGGAAGCCGTCTTTGCGGATCAGTGTG 458635 28 100.0 32 GATCAGTGTG ............................ TGGTAGCGATATAGCGATTCTGTACCGTCGCG 458695 28 100.0 32 TACCGTCGCG ............................ GGAATTGATAGACCACGTGCCACGAACGCCGG 458755 28 100.0 32 CGAACGCCGG ............................ GCAATCGTCGCGCTGGTGCTCGGCCTGCTAAC 458815 28 100.0 32 GCCTGCTAAC ............................ TTTAATCCACTCGCTGCCGCCGATTTTTTTCA 458875 28 100.0 32 ATTTTTTTCA ............................ ACACCATTCGCGTCGCCGACAACCACGCGGTG 458935 28 100.0 32 CCACGCGGTG ............................ TAACCCCTGACGAATGAGGGCCAATGCCGGCC 458995 28 100.0 32 AATGCCGGCC ............................ TTCCCGTTTCAGCGTCCTGCTGATGTAGTAAT 459055 28 100.0 32 ATGTAGTAAT ............................ AATTTGGAGCGCTATTTCTCCGACAACTACCA 459115 28 100.0 32 ACAACTACCA ............................ ATAGGCCAGTGCGGGTTTAGTCCGCGCAGGAA 459175 28 100.0 32 CGCGCAGGAA ............................ TGTAGCTTGCTGAACCATTCGAGAATTAACAC 459235 28 100.0 32 GAATTAACAC ............................ AAAGTCCTGCCCGTTGATGACGTAGAAATGCC 459295 28 100.0 32 TAGAAATGCC ............................ GGTCGTCTACATGGCTTAATGACAAGGTTCGC 459355 28 100.0 CAAGGTTCGC ............................ CAGTTCATAC ========== ====== ====== ====== ========== ============================ 17 28 31 GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [63.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [131,68] Score: 0/0.18 # # Final direction: F [1.51,0 Confidence: HIGH] >NC_020053 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 357311 36 100.0 37 NNNNNNNNNN .................................... CGTGTAGATGTTGAGGACGATTGGCTTACCATGCTCC 357384 36 100.0 38 NNNNNNNNNN ...................T...............T ATTATCAATATGGTTTTGCGATGACACCCGATCGACTC 357458 36 100.0 42 NNNNNNNNNN .......................G.A...G...... CGATCGCGTTGTTTCTGCCGGATCGTACACTAATCGATGGTC 357536 36 100.0 36 NNNNNNNNNN .......................G.A...G...... AGCAGGTGGCTTAGATTCTTTCTTTGATTCGGGCAA 357608 36 100.0 37 NNNNNNNNNN .................................... TCTGGCAGTTGTGCCGAAGATCGCCTCGCCGAAATCA 357681 36 100.0 38 NNNNNNNNNN .................................... GTTCGAGCCTCCCGACCTAAAACGGATAGCGCAGGATA 357755 36 100.0 36 NNNNNNNNNN .................................... GAGTAGATAATAAAATCGGTGTCGTTAGGTAGGTTA 357827 36 100.0 36 NNNNNNNNNN .................................... TCCTGGGAACCGAGCAAGGTCGCCACGCCTAACGTA 357899 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 9 36 37 TTACAACCCTCACCAGCCCCGAAAGGCTGATGTCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [10,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.50,-10.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [392,158] Score: 0.18/0.18 # # Final direction: R [0.55,0.78 Confidence: LOW] >NC_019978 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 947122 37 100.0 35 ATATCGCGCG ..................................... CTAGATGAGCGGATGGGGAGTACAATCAGACATAA 947194 37 100.0 37 TCAGACATAA ..................................... TACGGCGATGATCAAAAGAATGGGTTAGATCAATTTC 947268 37 100.0 38 GATCAATTTC ..................................... CCTGTTTCCTTGACTTGTAATGTTAGTTTTCTGCCGTC 947343 37 100.0 39 TTCTGCCGTC ..................................... CCTACATAACATTATATATAAAATTACCGTTTTTTTAAT 947419 37 100.0 38 TTTTTTTAAT ..................................... GTACAGGAGTGGCGATCAGAACAGACGAAAGCCTTAAC 947494 37 100.0 38 AAGCCTTAAC ..................................... CAATTCTCATTCCAAGCTTTGTAAGCCATAGCTGCTAC 947569 37 100.0 38 TAGCTGCTAC ..................................... ACGACAGGGGATGAGTGATAGAAATATTAGTATAGTTG 947644 37 100.0 35 AGTATAGTTG ..................................... AATAAGTGATGAAATAAGTGTGACAGCTGGCAAGA 947716 37 100.0 37 GCTGGCAAGA ..................................... GGTTACTTAACATGGGAAGCTCAACTTAATGCTAACT 947790 37 100.0 40 AATGCTAACT ..................................... CGGAATCAGAATAGCAGTTGGAACCAGTTTGACGTAGACG 947867 37 100.0 41 GACGTAGACG ..................................... GCCATTAGAAAGACAGGAAGTTATTCAGTAGACAATCAAGA 947945 37 100.0 38 ACAATCAAGA ..................................... TCTTTTTATTCTCCAGCTCTAATTTTTGCTTTTCTTCT 948020 37 100.0 37 CTTTTCTTCT ..................................... ATTTATTATTAGGATTTTTTCGTTCGATTAAGTAGCC 948094 37 100.0 39 TTAAGTAGCC ..................................... ACTATTGCTTTAAGCTCCGGTTTGATTTTTTTAAACTTT 948170 37 100.0 40 TTTAAACTTT ..................................... CACATTAAGAGTCGTGCTCCATCATTAGTCAAAGCACCTT 948247 37 100.0 38 AAAGCACCTT ..................................... CTAATTCTTCCTTAGCAAACTTCTGTAGGTCTAACTCT 948322 37 100.0 38 GTCTAACTCT ..................................... CTAATTCTTCCTTAGCAAACTTCTGTAGGTCTAACTCT 948397 37 100.0 GTCTAACTCT ..................................... ATATAAGTTA ========== ====== ====== ====== ========== ===================================== 18 37 38 GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.76%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.00,-5.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [312,156] Score: 0/0.18 # # Final direction: F [0.37,0.27 Confidence: LOW] >NC_020064 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 463176 28 100.0 32 TACTGCAACA ............................ CGCCCACCATCAGCAGCACCAGCGCGCTTTTT 463236 28 100.0 32 CGCGCTTTTT ............................ ATTCCTCAGCGATTTCACGGAACGTGACCGAC 463296 28 100.0 32 CGTGACCGAC ............................ TAGCAATACTACGAGTTACTAGGCAGGCTACC 463356 28 100.0 32 GCAGGCTACC ............................ TCTATAGTGCTTCTCTAGTATCTATCTGTATT 463416 28 100.0 32 TATCTGTATT ............................ CAGCGCCGTAGCGCGGGCTTCTAACTGCTCAG 463476 28 100.0 32 AACTGCTCAG ............................ AATGCCGTTGGCACTAATAGGCAGGTCATTTA 463536 28 100.0 32 AGGTCATTTA ............................ GAGCTACGGGAACAGCCCGTTCAACGCAGAGC 463596 28 100.0 32 AACGCAGAGC ............................ TCGTTAATCGGGGATGTGCCAGATGCACCGCG 463656 28 100.0 32 ATGCACCGCG ............................ GCTGAGCGAGTGGCCGAAGGCATGGCGCCAGT 463716 28 100.0 32 TGGCGCCAGT ............................ TTCCACATTTCAACCTGTATAGAGGTCAGCTG 463776 28 100.0 32 AGGTCAGCTG ............................ ACCGGTGACCCGACCAGGGTATTAATCGACCT 463836 28 100.0 32 TAATCGACCT ............................ ATTCAGTCTCCCGTTCCCCACCCTGGCGGGGA 463896 28 100.0 32 CTGGCGGGGA ............................ CGGCATATTTGCATCGGTAATTCAGTGACAAC 463956 28 100.0 32 CAGTGACAAC ............................ AACGTCAGGCCGGCGGCGCTGGCCGGATCATC 464016 28 100.0 32 CCGGATCATC ............................ TTCCAGATGAGCACCGGTGCCATCACCGAACA 464076 28 92.9 TCACCGAACA ......................C....G TTACACCAA ========== ====== ====== ====== ========== ============================ 16 28 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [197,240] Score: 0/0.18 # # Final direction: F [1.65,0 Confidence: HIGH] >NC_020055 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 118199 36 100.0 35 AGTGAGATGG .................................... TCTTATGAAGGGCTGAGTGCACTTTTCGATTATTA 118270 36 100.0 34 TCGATTATTA .................................... CAGTAACGCGTTTGGCGATATGAGGCTAAATGCG 118340 36 100.0 36 GCTAAATGCG .................................... AATGAGCGAAATGTATGCCAGAGGTTATCTGGTATT 118412 36 100.0 37 ATCTGGTATT .................................... TTCCAAGGGAGGGGAGGGAGCCATTCGCTTTGACAGA 118485 36 100.0 36 CTTTGACAGA .................................... CTCTTACATAGACAGAGGAGTGAAAAACTCAATTAT 118557 36 100.0 35 ACTCAATTAT .................................... GTCATGACATTCCGGCGTATATGAGTAACATCAAG 118628 36 100.0 37 TAACATCAAG .................................... TTTATATTTATTTTGGCAATAATCTGCTTCTCTAGCC 118701 36 100.0 TTCTCTAGCC .................................... GCTATGGTTT ========== ====== ====== ====== ========== ==================================== 8 36 35 GTCAAAACCCATACCGATATGGATACCTCTTTTGAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [236,21] Score: 0.18/0.18 # # Final direction: R [0.18,0.37 Confidence: MEDIUM] >NC_020055 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 10819 36 100.0 36 GCTTTGTTGC .................................... AGATGGATCGCTGCTTGATGATGATAACCTTGATCT 10891 36 100.0 35 ACCTTGATCT .................................... GTCAAGCAAATTAAGCAAGTGGTTGAGGCAGCAGT 10962 36 100.0 34 AGGCAGCAGT .................................... ATTCATATTTATCCTCTATTTAGTTAGAGGTTCA 11032 36 100.0 TAGAGGTTCA .................................... GCTATGGATT ========== ====== ====== ====== ========== ==================================== 4 36 35 GTCAAAACCCATACCGATATGGATACCTCTTTTGAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [128,634] Score: 0.18/0.18 # # Final direction: R [0,0.55 Confidence: HIGH] >NC_020055 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2366564 36 100.0 34 AACCCATAGC .................................... TGAAACTTCCTTCCGAACGCAGGAGCAGGAGCAA 2366634 36 100.0 32 GCAGGAGCAA .................................... TTGCAGCCGAAAGAGATCTGTACAGTCTTTTT 2366702 36 100.0 CAGTCTTTTT .................................... GCAATAAAGC ========== ====== ====== ====== ========== ==================================== 3 36 33 CTCAAAAGAGGTATCCATATCGGTATGGGTTTTGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.50,-3.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [751,788] Score: 0/0.18 # # Final direction: F [0.37,0 Confidence: MEDIUM] >NC_020055 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 24430 36 100.0 35 GCTTTGCTGC .................................... CACTCCGTCCACTGAATACCTTGCAGACTGCATTT 24501 36 100.0 34 GACTGCATTT .................................... AGAGAAGTCTTCGAGGTAGATATACCTCCTCATC 24571 36 100.0 36 CCTCCTCATC .................................... TGTCAAATATACACAGTGTGTCGTTATGACACACAA 24643 36 100.0 TGACACACAA .................................... GCTATGGTTTT ========== ====== ====== ====== ========== ==================================== 4 36 35 GTCAAAACCCATACCGATATGGATACCTCTTTTGAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [128,242] Score: 0/0.18 # # Final direction: R [0,0.37 Confidence: MEDIUM] >NC_020064 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 445438 29 100.0 32 TATATTTAGT ............................. CCTGGCCGTCGTTGGCCAGCGTGATCAGCACC 445499 29 100.0 32 GATCAGCACC ............................. CCCGCGGCGCGAACGGCAGCGGCGCATTCCTG 445560 29 100.0 32 CGCATTCCTG ............................. CCGATCCGGGTCAGCAAGCCCAGCACAGCAGA 445621 29 100.0 32 GCACAGCAGA ............................. TTAAAATATACGCGGTGATAGTCACCTTTAAT 445682 29 100.0 32 CACCTTTAAT ............................. GTTTTTCTGACGTCACCACGCGAGCAGAGGAA 445743 29 100.0 32 AGCAGAGGAA ............................. AGGTCTACGAGGGCGTCGTCCGGCTGACAAAA 445804 29 100.0 32 GCTGACAAAA ............................. GAGCAGTCGCAAGTTGAGGACGTGACGCCTGA 445865 29 100.0 32 TGACGCCTGA ............................. CAGACTCACTCGATTTGGAGGCATGAACAGTG 445926 29 100.0 32 ATGAACAGTG ............................. AAAATTTGATATTAATAGCGCAATGATTGTGG 445987 29 100.0 ATGATTGTGG ............................. GCAGTTACCG ========== ====== ====== ====== ========== ============================= 10 29 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-13.40,-12.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [75.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [197,6] Score: 0.18/0.18 # # Final direction: F [1.69,0 Confidence: HIGH] >NC_020055 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 36027 36 100.0 36 GCTTTATTAC .................................... TAACAAGGAACGCATCCTTGAAACCAAGGAATCTAT 36099 36 100.0 34 AGGAATCTAT .................................... CAATCGGAAGAGGAGAGGAACGGAGGATTGTCCT 36169 36 100.0 35 GGATTGTCCT .................................... TGCGCATCACCGGCCGCGGCCCAGTCGCCATTCTG 36240 36 100.0 CGCCATTCTG .................................... GCTATGGTTT ========== ====== ====== ====== ========== ==================================== 4 36 35 GTCAAAACCCATACCGATATGGATACCTCTTTTGAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [68.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [165,992] Score: 0.18/0.18 # # Final direction: R [0.27,0.55 Confidence: MEDIUM] >NC_020089 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3957610 37 100.0 53 NNNNNNNNNN TGC..........AA....T........G........ ACCGGCGGACAAGGCGGCGCCGGGGGTGCTGGCATCAGCTTCAGCAACGGCAG 3957700 37 100.0 47 NNNNNNNNNN ........................G...GTG...... ACCGGGGGCGACGGCGGCAACGCAGGCACCGGCGCCGGCGACCCCGG 3957784 37 100.0 35 NNNNNNNNNN ...A................................. AGCGGCGGGGCCGGCGGTAGCGGCGGGGCCAACTT 3957856 37 100.0 44 NNNNNNNNNN ..................................... ACCGGCGGCAAAGGCGGCCTAAACACCGACGGACTCAGCAGCGC 3957937 37 100.0 32 NNNNNNNNNN ..C.A................................ AAAGGCGGCACCGGCGGGGCCGGCGACGACTC 3958006 37 100.0 53 NNNNNNNNNN .GC......G...........A.....GG........ AACGCCGGCGCCGGCGGCCTAGCCAACACCGGCGGCACCGCAGGCAACGCGGG 3958096 37 100.0 41 NNNNNNNNNN ..T......TGA.......CAA.....T.A....... CAAGGAGACAGCGGTTCCGGATTGGGCGGCCAGCCCGGCTT 3958174 37 100.0 35 NNNNNNNNNN TGC......GG.........AA.....GG.......T AGCAGCGGTGCCGGCGGCACCAACGGCTCCGGCGG 3958246 37 100.0 35 NNNNNNNNNN .GC......GG.......ACAA......G....G..T GCTGGCATCAGCTTCAGCAACGGCAGCAACGGCGG 3958318 37 100.0 47 NNNNNNNNNN ..C............G...GTG...........G... GACGGCGGCAACGCAGGCACCGGCGCCGGCGACCCCGGCAAAGGCGG 3958402 37 100.0 35 NNNNNNNNNN ..C..........................G......G GCCGGCGGTAGCGGCGGGGCCAACTTCAACGGCGG 3958474 37 100.0 35 NNNNNNNNNN ..C.................................. AAAGGCGGCCTAAACACCGACGGACTCAGCAGCGC 3958546 37 100.0 32 NNNNNNNNNN ..C.A................................ AAAGGCGGCACCGGCGGGGCCGGCGACGACTC 3958615 37 100.0 53 NNNNNNNNNN .GC......G...........A.....GG........ AACGCCGGCGCCGGCGGCCTAGCCAACACCGGCGGCACCGCAGGCAACGCGGG 3958705 37 100.0 59 NNNNNNNNNN ..T......TGA.......CAA.....T.A....... CAAGGAGACAGCGGTTCCGGATTGGGCGGCCAGCCCGGCTTTGCCGGCGGCCCCGGCGG 3958801 37 100.0 68 NNNNNNNNNN ...A.....GG.........A..C............. ACCAACGGCTCCGGCGCCGGCGGGGCCGGCGGACAAGGCGGCGCCGGGGGTGCTGGCATCAGCTTCAG 3958906 37 100.0 56 NNNNNNNNNN .......A...A.....................G... GTGGGCGGCACCGGGGGCGACGGCGGCAACGCAGGCACCGGCGCCGGCGACCCCGG 3958999 37 100.0 35 NNNNNNNNNN ...A................................. AGCGGCGGGGCCGGCGGTAGCGGCGGGGCCAACTT 3959071 37 100.0 26 NNNNNNNNNN ..................................... ACCGGCGGCAAAGGCGGCATGGGCGG 3959134 37 100.0 26 NNNNNNNNNN ..T..CT...GA......GC.......TGA....... AACGCCGGGGTCGGAGGAAAAGGCGG 3959197 37 100.0 44 NNNNNNNNNN ..C.AA.....A........G......G......... ACAGGCGGGCCCGGCGGCAGCGGCGGCGCGCCCACCGGCAGCGG 3959278 37 100.0 26 NNNNNNNNNN ..C........AA......G.......TGA....... GATGGCGCCGACGGAGGGGCAGCCAC 3959341 37 100.0 1 NNNNNNNNNN .GG..T....GA.......GA...T..T.A...T..T NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 23 37 41 CAACGGCGGCACCGGCGGCACCGGCGGCACCGGCGGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-12.40,-15.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [39-53] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [15.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2419,709] Score: 0.18/0.18 # # Final direction: F [0.96,0.64 Confidence: LOW] >NC_020089 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3118581 36 100.0 38 NNNNNNNNNN .................................... TCGGGCACGGCCGAAACACCGCGCGAAGGGCGGTTCAA 3118655 36 100.0 40 NNNNNNNNNN .................T.................. TGGGAGGATGTCACTCGGACATAGCTGTCATCGGCGGTGT 3118731 36 100.0 40 NNNNNNNNNN ................................G... ATGGAGCAGTAGCGTGGCTGTGGTGTGGCGGGCGATATGC 3118807 36 100.0 37 NNNNNNNNNN .................................... TGCTGCACCTCCCGCACCCGGTGCGATTCTGCGTCCA 3118880 36 100.0 36 NNNNNNNNNN .............................C...... CCCGATAGTCGCGCTCGTCCATGTCCCACCATGAGG 3118952 36 100.0 35 NNNNNNNNNN .................................... TACCTGATAGAAGCCGGAAAGCTCCGTGCCGTCAG 3119023 36 100.0 38 NNNNNNNNNN .................................... AGGGCACTGGACCTGTATGAGGCACAGATGGCGTACTA 3119097 36 100.0 40 NNNNNNNNNN .................................... CCGGATCGGTTACCCACGCCGATTTACTGGCCATCGTCGG 3119173 36 100.0 35 NNNNNNNNNN .................................... ACTTGCGCGCACAACGCATCCGCCATCCACGGGGC 3119244 36 100.0 37 NNNNNNNNNN .................................... CTGAAAGGGGGACTGTGGACGAGTTCGCGCTCAAAAT 3119317 36 100.0 38 NNNNNNNNNN .................................... TTGAACACGCCGATACCTATTTGGTCGGGAGTGATAAA 3119391 36 100.0 35 NNNNNNNNNN .................................... TGACAGGGTGCGGTGGTCGCTGATCGGCTCCCCGA 3119462 36 100.0 39 NNNNNNNNNN .................................... ACGGACGAGCTGGACCGCATCAGCGATGCTGAGCTGAGG 3119537 36 100.0 37 NNNNNNNNNN .................................... TTGTCTCAATCGTGCCGTCTGCGGTGACACGCTCCAA 3119610 36 100.0 40 NNNNNNNNNN .................................... TCGACGATTGGGACATCGACATCGACGCGATCGTCGACGA 3119686 36 100.0 41 NNNNNNNNNN ..........T......................... GTGATCTTCTCTCCTGGCGAGGTCAAGGAAATCGATGTGGA 3119763 36 100.0 36 NNNNNNNNNN .................................... CACCAGGATCAGCGCCAAGCCAGTTAGCGCAATCCA 3119835 36 100.0 36 NNNNNNNNNN .................................... CTCCCGGACCATCTGCAGCTCGCCCGGGTCCATGCG 3119907 36 100.0 37 NNNNNNNNNN .................................... CGGAGTCATCCGCGCGGGCCGGCGCGATTGTTGCCGG 3119980 36 100.0 36 NNNNNNNNNN .................................... TGGCGATTTACGACGCTGACGGGAACTCGTGCGAAT 3120052 36 100.0 25 NNNNNNNNNN ................................TCCG CGAAATTCACTGCGCGTTATTCAAG 3120113 36 100.0 41 NNNNNNNNNN .................................... CCGAGCCGACCATCCGCATCACACCGAAAGGGTTGGCGCAA 3120190 36 100.0 36 NNNNNNNNNN .................................... ACGTGGGGAGAGGGAATGGCAATGATGGTCGACGAA 3120262 36 100.0 40 NNNNNNNNNN .................................... CTCGGACAGCATCTCCCCGGGCGGGCAGCAGATATCCCAT 3120338 36 100.0 41 NNNNNNNNNN .................................... CGACCCGTGGCCGCCAGGTTGCCGCCGCCGTTGCTCACCTG 3120415 36 100.0 37 NNNNNNNNNN .................................... CCGGAAGTCAACTAGAGCGGGTGTCGAACGCTGCCCG 3120488 36 100.0 35 NNNNNNNNNN .................................... ATGCGAATCCGCTGTCAGCACATGGGATTCCGAGT 3120559 36 100.0 37 NNNNNNNNNN .................................... CTAGGCGGCCCCGGCGAGGCTGGGGGCGGTTTCACGC 3120632 36 100.0 38 NNNNNNNNNN .................................... CAGCGCAGACGGCAGCCCCGAGTACTCGCTCTCCTCAG 3120706 36 100.0 37 NNNNNNNNNN .................................... AGGCTGAAATTGAAGCCGGAAATGACGACGCATTGGT 3120779 36 100.0 35 NNNNNNNNNN .................................... CTAAGCCCGCTAATCCCGCACAAGTGGTCAGAAAA 3120850 36 100.0 39 NNNNNNNNNN .................................... CTGATGATTGGTCGGCGTATGACGTGCTACTGAGGTGTT 3120925 36 100.0 34 NNNNNNNNNN .................................... TAGAAGGCGATCACTGGAAGCACGGCGCTTGCGA 3120995 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 34 36 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [38.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [150,50] Score: 0.18/0.18 # # Final direction: R [0.18,1.42 Confidence: HIGH] >NC_020125 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2162337 36 97.2 30 TTGCTCCTAA ................T................... TAAAAAATAGAATAAGAAATATTCCTATCA 2162403 36 97.2 30 ATTCCTATCA ................G................... CATTTCAGAGTTGCAGATTAAATTGGTTGA 2162469 36 94.4 30 AATTGGTTGA .......T........G................... TTTAGCTTCATTCTCTGTACCTTTTAGAAT 2162535 36 97.2 30 CTTTTAGAAT ................T................... AAAGGCTTATCGCCTCTATATTTTCAAAAT 2162601 36 97.2 30 TTTTCAAAAT ................T................... CTGTTGTTGTAAATATAATAGGTCCTATTG 2162667 36 97.2 30 GGTCCTATTG ................T................... CCTTTTCCTCATCACCTTCGTAGATGCAGA 2162733 36 97.2 30 TAGATGCAGA ................T................... TTCATTTATACTTCTAGGTAACTTAGTTAA 2162799 36 100.0 30 ACTTAGTTAA .................................... AAAGGAACGCTACTCGTTGTAGGAAGCACA 2162865 36 100.0 30 AGGAAGCACA .................................... GGAGCCACCAAGATATCCCAAGGGTTCGTC 2162931 36 100.0 30 AGGGTTCGTC .................................... TAAGATTTCTGGATTTTCGTATATGTTGCT 2162997 36 100.0 30 ATATGTTGCT .................................... TGCTTTGTTCTTCTCCTTCTTTTGTTGCCG 2163063 36 100.0 30 TTTGTTGCCG .................................... AGCCACAGCGTTTGATGGTTCTACTGCTAT 2163129 36 100.0 CTACTGCTAT .................................... AGATCATGAA ========== ====== ====== ====== ========== ==================================== 13 36 30 GTTGGGACTGCTCTCACTTTGAAGGGTATTCACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:52.78%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [65.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [130,1492] Score: 0.18/0.18 # # Final direction: F [0.64,0.59 Confidence: LOW] >NC_020125 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================================== ====== 871223 47 100.0 30 ATTTTTTGAG ............................................... ACGCTGGGTCCCATCAAGGTCATACGTGGC 871300 47 100.0 30 CATACGTGGC ............................................... AGTTTTTCTAAATCCTTAAATATTTTATCT 871377 47 100.0 30 TATTTTATCT ............................................... ATCCAAAACGATTTACAGCAGATTGCGAGT 871454 47 100.0 30 GATTGCGAGT ............................................... GCGATTCCGGTTCAGGCCAGCACCTGGAGA 871531 47 100.0 30 CACCTGGAGA ............................................... TAGTATTGGGATGTGTTATTTAAAAAGTGT 871608 47 100.0 30 TAAAAAGTGT ............................................... TTTCGGTTGCTATCCGAAACGATTCGGATC 871685 47 100.0 30 GATTCGGATC ............................................... GAGGTGTTGTCATATCTCAATCTCGTCTAT 871762 47 100.0 30 TCTCGTCTAT ............................................... TACTTCGTTTATTAGTTTTATTGCAATGTT 871839 47 100.0 30 TTGCAATGTT ............................................... TAGATACATCTCTTTATCTTCGTGTAAAAT 871916 47 95.7 30 CGTGTAAAAT ........T...............G...................... GTCTTTGAGGTAAGGTTTTGTCAAATCCCA 871993 47 95.7 30 TCAAATCCCA ........T...............G...................... TAATGGAGATTATAATATCCAGATACAAAC 872070 47 95.7 30 AGATACAAAC ........T...............G...................... TCTATCGAAGTGTTTAAAAACACTTGATTT 872147 47 95.7 30 CACTTGATTT ........T...............G...................... GATATAGTATCAGATGAACCGACAACGGAC 872224 47 95.7 30 GACAACGGAC ........T...............G...................... TGATTGACTCTATTTTCTCCTGTGCAGATA 872301 47 95.7 TGTGCAGATA ........T...............G...................... TTATTAAAAGTTTTCCGATACTTCCTATGT ========== ====== ====== ====== ========== =============================================== 15 47 30 GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.09%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [109,80] Score: 0/0.18 # # Final direction: F [4.5,0.37 Confidence: HIGH] >NC_020125 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================================== ====== 871232 38 100.0 39 NNNNNNNNNN ...................................... ACGCTGGGTCCCATCAAGGTCATACGTGGCGTTGCGAAC 871309 38 100.0 39 NNNNNNNNNN ...................................... AGTTTTTCTAAATCCTTAAATATTTTATCTGTTGCGAAC 871386 38 100.0 39 NNNNNNNNNN ...................................... ATCCAAAACGATTTACAGCAGATTGCGAGTGTTGCGAAC 871463 38 100.0 39 NNNNNNNNNN ...................................... GCGATTCCGGTTCAGGCCAGCACCTGGAGAGTTGCGAAC 871540 38 100.0 39 NNNNNNNNNN ...................................... TAGTATTGGGATGTGTTATTTAAAAAGTGTGTTGCGAAC 871617 38 100.0 39 NNNNNNNNNN ...................................... TTTCGGTTGCTATCCGAAACGATTCGGATCGTTGCGAAC 871694 38 100.0 39 NNNNNNNNNN ...................................... GAGGTGTTGTCATATCTCAATCTCGTCTATGTTGCGAAC 871771 38 100.0 39 NNNNNNNNNN ...................................... TACTTCGTTTATTAGTTTTATTGCAATGTTGTTGCGAAC 871848 38 100.0 39 NNNNNNNNNN ...................................... TAGATACATCTCTTTATCTTCGTGTAAAATGTTGCGAAT 871925 38 100.0 39 NNNNNNNNNN ...............G...................... GTCTTTGAGGTAAGGTTTTGTCAAATCCCAGTTGCGAAT 872002 38 100.0 39 NNNNNNNNNN ...............G...................... TAATGGAGATTATAATATCCAGATACAAACGTTGCGAAT 872079 38 100.0 39 NNNNNNNNNN ...............G...................... TCTATCGAAGTGTTTAAAAACACTTGATTTGTTGCGAAT 872156 38 100.0 39 NNNNNNNNNN ...............G...................... GATATAGTATCAGATGAACCGACAACGGACGTTGCGAAT 872233 38 100.0 39 NNNNNNNNNN ...............G...................... TGATTGACTCTATTTTCTCCTGTGCAGATAGTTGCGAAT 872310 38 100.0 39 NNNNNNNNNN ...............G...................... TTATTAAAAGTTTTCCGATACTTCCTATGTGTTGCGAAC 872387 38 100.0 1 NNNNNNNNNN ...............G..................T..T NNNNNNNNNN ========== ====== ====== ====== ========== ====================================== 16 38 39 TATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:73.68%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-1.20,-1.30] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [118,3] Score: 0.18/0.18 # # Final direction: F [5.09,0.27 Confidence: HIGH] >NC_020126 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 10094136 36 97.2 34 CGCGCGGAGA .........................A.......... ACGCCAACATCGACTTCACCCTCTCTCACCAGTT 10094206 36 91.7 37 CTCACCAGTT T............C.....G................ AGCTCCAGCTCGCTGCCGTTGCCTTCATCGCGGAGTC 10094279 36 97.2 40 TCGCGGAGTC ..A................................. AGCGCCTGGGCGGGCGCGCGGGCCCCGAGCGCAACAAGGA 10094355 36 97.2 32 GCAACAAGGA .........................A.......... ACGGCGTGGGCGTGCTCACGCCGCGCGGGGTG 10094423 36 100.0 35 GCGCGGGGTG .................................... GCCATTCCCAGGCGCTGCGCGAGCGCCTCCCGCTC 10094494 36 100.0 35 CCTCCCGCTC .................................... ATCGGCCGCTTCGACGAAGCTGGTGGGCATCCTGG 10094565 36 100.0 36 GGCATCCTGG .................................... TACAAGGTGAAGGGCGAGGGTGAAGGGAAGTAGGAG 10094637 36 100.0 37 GAAGTAGGAG .................................... TCTCAAACGGCTCAAACTGCACGGCGGCTGGAGCTAA 10094710 36 100.0 34 CTGGAGCTAA .................................... TGTCCCAGCGCTCCATGAGGATGGGGACCCGCTT 10094780 36 100.0 36 GGACCCGCTT .................................... AGCATGATTATCAAGAAGGCGAAAATCGGGGTCATT 10094852 36 100.0 35 CGGGGTCATT .................................... CCTGCCTCCCCCGCATGGGTTCCCAGCACCTGCAG 10094923 36 100.0 36 GCACCTGCAG .................................... GGGAGCAGTGCAGGCGCGCCGCAGCCTCGTCAATGG 10094995 36 100.0 37 TCGTCAATGG .................................... ATGATCTTGTCGTGAAGACCTTCAAGGCCGAGATTCT 10095068 36 100.0 38 CCGAGATTCT .................................... GTGGCCATTCGGCTCCAAGACGACGCCACCGCTCCCAT 10095142 36 100.0 35 CCGCTCCCAT .................................... TCTCCTCACTCGGGCCAGTCCACTCCTACGACAGC 10095213 36 100.0 43 CTACGACAGC .................................... TGGCCCCCGCGTCGTGGGCGTCCGCAGAAGCAGGCATGCCCAG 10095292 36 100.0 40 GCATGCCCAG .................................... CGTAGCAGAAGGCCCAGAATTGGAGCGGGTCGTCCGCCTC 10095368 36 100.0 35 CGTCCGCCTC .................................... CAGACGGCCCGCGAGCTGCGCGACAAGGGCACCAC 10095439 36 100.0 40 AGGGCACCAC .................................... TCGAGCGATTGCGGGCCGCAATCTTGGACCTGGCGACAGG 10095515 36 97.2 39 TGGCGACAGG ...........A........................ GTTGAAGTCCGTGAGGGATGCCATCGCCACGTGGCTCGG 10095590 36 97.2 34 CGTGGCTCGG .................T.................. TGACGAGAAACCCAGGGTGCCCGTTGGCAAACCA 10095660 36 100.0 TGGCAAACCA .................................... GTACTTCCTT ========== ====== ====== ====== ========== ==================================== 22 36 36 GTGCTCAACGCCTTCCGGCATCACGGCGAGCCACGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.30,-7.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [284,143] Score: 0/0.18 # # Final direction: R [0.37,1.05 Confidence: MEDIUM] >NC_020126 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 10096998 36 100.0 36 CACCCTGCTA .................................... TCGACGCTGATGCGGAAGCGTGCGCCGACTTCGAGA 10097070 36 100.0 34 GACTTCGAGA .................................... TCAGGGGTGTGTCGAAGCTCCTGGGAACCAACAT 10097140 36 100.0 37 GAACCAACAT .................................... TCGTGACGGGGTTGGAAGCATCGCTCAACAACGTTGG 10097213 36 100.0 38 ACAACGTTGG .................................... ATTAGGATAACCAGTAGACCTCTTAGGGTTCCTCTTAG 10097287 36 100.0 35 TTCCTCTTAG .................................... CGGTGCGCCTCCGCGCCCTTGGCCTCGCACGTGAA 10097358 36 100.0 36 CGCACGTGAA .................................... GATTGCACTCGCTCTTCCCGGAGCTCCTGTCGCAGG 10097430 36 100.0 34 CTGTCGCAGG .................................... GCCGCGCCGAGTGGTTGGCCGCGCACGTGGGCTG 10097500 36 100.0 38 ACGTGGGCTG .................................... TAGACTATGGACGAGAGAGTGACCTGGGACGAGTATTT 10097574 36 100.0 37 ACGAGTATTT .................................... TTCTCATTTGGTGTCACACCATCAGAGAGCGGGCCTC 10097647 36 100.0 39 AGCGGGCCTC .................................... TTGGGTTTTGGGTTCCTACGTTGACCAGTCTTGAAGTTG 10097722 36 100.0 34 CTTGAAGTTG .................................... CGTTGGCGCCCGTGCCGTTGCGCGAGACGCCCTG 10097792 36 100.0 36 AGACGCCCTG .................................... CCGTTGAACCCTGAAGGTCATCATGCCTCTCCACGA 10097864 36 100.0 CTCTCCACGA .................................... TTCAAACTGCT ========== ====== ====== ====== ========== ==================================== 13 36 36 GTGCTCAACGCCTTCCGGCATCACGGCGAGCCACGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.30,-7.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [38.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [82,762] Score: 0.18/0.18 # # Final direction: R [0.37,0.82 Confidence: MEDIUM] >NC_020126 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 10114603 36 97.2 34 GATGACTGAC ............C....................... ACGACGACCTCAACGGCAAGGTCCACTTCAAGGG 10114673 36 91.7 34 ACTTCAAGGG ...............G.............A.T.... CGTCAGGTGGCGAGGTGCCAATCGGTGCGCGCTC 10114743 36 97.2 37 GTGCGCGCTC ....................C............... TCGACCAGATGGGGGGATGGGTGAAGGCGGGGAAGAA 10114816 36 97.2 34 CGGGGAAGAA .........A.......................... TCACGTTCACGGCGGTGATCGCGGGCGCGATCCA 10114886 36 100.0 34 GCGCGATCCA .................................... CGGACGAGCTCGTCATTCTCTCGGCTCGCCATCA 10114956 36 100.0 36 CTCGCCATCA .................................... AGAGGAGGGTCCTGTGCGTCGACGATCTGGAGAAGC 10115028 36 100.0 38 CTGGAGAAGC .................................... GACCTGGAAACGGTGACGAAGTATCAGATTCCCCAAAT 10115102 36 100.0 36 TTCCCCAAAT .................................... GATTGACACGAGCGACCTGGAGTTTCCCGAGTCACT 10115174 36 100.0 37 CCGAGTCACT .................................... CCGGTCCAGGTGGAAGCCGCGCTGCGCGGCATCAAGA 10115247 36 100.0 41 GGCATCAAGA .................................... CTCCGACCATTGCCATCACACCAATGCGACGCGCCTTCTCA 10115324 36 100.0 35 CGCCTTCTCA .................................... TTGGCCTGTAGAGAGAATTCGATTTGGGCCATATA 10115395 36 100.0 39 GGGCCATATA .................................... GTGTAACAATTCCTTTGTTACCATGTCGCCCGGAGATTT 10115470 36 100.0 37 CCGGAGATTT .................................... GGACACATGACTGAAAAAGAAATGATAATGATTGCGT 10115543 36 100.0 38 ATGATTGCGT .................................... CTCACCCCCTTCCGTAGCTCCACCGCTCGCTACAACTT 10115617 36 100.0 37 GCTACAACTT .................................... CGATCCCGTTCGAGACGTTCCCGCCCCAGCTCTACGG 10115690 36 100.0 34 AGCTCTACGG .................................... TATTACAGTCCTGACGAAATCATTGGTTGAGACG 10115760 36 100.0 38 GGTTGAGACG .................................... GCTCGAGCGGCAGGCGCTGGCAGTGGCGGGGCCGAGGA 10115834 36 100.0 36 GGGCCGAGGA .................................... GGATTTACAGGTAGCATCTCTCTGTATGGATACCTG 10115906 36 97.2 35 TGGATACCTG .......................T............ CCCAGGATTCCGAGGTCTAAGATGTCCAAGTATGA 10115977 36 100.0 36 CCAAGTATGA .................................... CCACGGCTTGAAGGCCGTCGCCACGGCGATGAAGTA 10116049 36 100.0 CGATGAAGTA .................................... AGCCGCCCTG ========== ====== ====== ====== ========== ==================================== 21 36 36 GTGCTCAACGCCTTCCGGCATCACGGCGAGCGGCGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [5,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.30,-7.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [38.3-38.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [558,427] Score: 0/0.18 # # Final direction: R [0,0.78 Confidence: HIGH] >NC_020126 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 10098002 36 100.0 40 TCGACGTATT .................................... TGCCCACCGAGGTGGAGTCCAACCCGATGGCCGTCACCTC 10098078 36 100.0 36 CCGTCACCTC .................................... TGAGCGTACGCATGCAGAGAAGCACCGACTGCCAGG 10098150 36 100.0 38 GACTGCCAGG .................................... CTGCTGCGCGGCGGCACGTCCTGCGGCATCATCACCGC 10098224 36 100.0 43 TCATCACCGC .................................... TGCTCCCGATCCCGTTCGAGACGTTCCCGCCCCAGCTCTACGG 10098303 36 100.0 33 AGCTCTACGG .................................... TGGGACCTTTTGTACTATGAGTCATGGCTTTCT 10098372 36 100.0 ATGGCTTTCT .................................... AGCCCCGCTC ========== ====== ====== ====== ========== ==================================== 6 36 38 GTGCTCAACGCCTTCCGGCATCACGGCGAGCCACGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.30,-7.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1086,254] Score: 0.18/0.18 # # Final direction: F [0.55,0.37 Confidence: LOW] >NC_020126 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 5820445 37 83.8 20 TGCGGTCACG -----....................T........... GATGGGGTGTGCGTTTGCAT 5820502 37 97.3 20 GCGTTTGCAT .........................T........... AATGGGGTGCGCGGCTGCAT 5820559 37 100.0 20 GCGGCTGCAT ..................................... AATGGGTTGCGCGGCTGCAT 5820616 37 100.0 20 GCGGCTGCAT ..................................... GATGGGGTGTGCGTTTACGG 5820673 37 91.9 GCGTTTACGG ....G....................A..........A TGCGGCGTGT ========== ====== ====== ====== ========== ===================================== 5 37 20 TCGCCCCTACCGCGCCGAACGTCTGCGTCGTGTTCGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [31.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1614,408] Score: 0.18/0.18 # # Final direction: F [0.82,0.37 Confidence: MEDIUM] >NC_020134 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1503383 30 100.0 36 TGACTACAAC .............................. AAAACACCCGGTGGTATTGGGCTGTAAGATTTATGT 1503449 30 100.0 35 AGATTTATGT .............................. GGAACCGCCGAAAATGAGGAAGGCAGCAGAGGTAT 1503514 30 100.0 37 GCAGAGGTAT .............................. AATTGCGTCTGTACTTATACCGTCCTTTTCAATACCA 1503581 30 100.0 TTCAATACCA .............................. TTAAGATTAAA ========== ====== ====== ====== ========== ============================== 4 30 36 ATTTACATTCCATTATGGTTAGATTAAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [63.3-86.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [124,221] Score: 0/0.18 # # Final direction: R [0,0.64 Confidence: HIGH] >NC_020134 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1784944 30 100.0 35 NNNNNNNNNN T.....TAC.ACTC....GA.......... TTAATTAGAATTTTTAAGCTTAATCCCACCAAAGA 1785009 30 100.0 35 NNNNNNNNNN .......C...................... ATGTAACCCGGCTGCCTTAATAGCTTCTTCAGCTT 1785074 30 100.0 34 NNNNNNNNNN .............................. TAAGGCCCGAGACCCACTCCCAAGGCCCATTAAG 1785138 30 100.0 35 NNNNNNNNNN .............................. CCGGCGATGAAGAGGAAAAAATAAAGAATGATAAT 1785203 30 100.0 35 NNNNNNNNNN .............................. CTCGTAGGGAGCTTTTCAGATAAAGGCGGTACAGG 1785268 30 100.0 36 NNNNNNNNNN .............................. GAAATACCGCGCGATACTCTTCCCTAAAATGCAATT 1785334 30 100.0 35 NNNNNNNNNN .............................. CCTATTCCCATGAAGCTGTTTTTTCACTTCTTCCG 1785399 30 100.0 36 NNNNNNNNNN .............................. AGTTTCCCCCCCCTACCCCTTTCAAAATACTAAAAA 1785465 30 100.0 54 NNNNNNNNNN .............................. TTACTCTATTATTCCTTACATAATTAATATTATGTAGTGAATGTATGCTATACC 1785549 30 100.0 35 NNNNNNNNNN .............................. CTGAATTGCCGCATCTGCAATATGAGCTGACTTAA 1785614 30 100.0 36 NNNNNNNNNN .............................. TTTTTTAAGTCTGAAATTAAACTCCTGGGAGATGTA 1785680 30 100.0 37 NNNNNNNNNN .............................. GTGGAACGGTTCTGGCCGATTTTTACAAAGATACTAA 1785747 30 100.0 35 NNNNNNNNNN .............................. TATAGTATTCATCTCCATGCTCATACTTTAAATCA 1785812 30 100.0 36 NNNNNNNNNN .............................. CCAACCTGTTTGGATGTTATAAAATCTATCACCTAC 1785878 30 100.0 35 NNNNNNNNNN .............................. TCGTCAACCCATATCTCCATCCTCGTGCTGTCCAG 1785943 30 100.0 35 NNNNNNNNNN .............................. AGGAATTGAGGTTGAAGAAAAGAAAAAAAGAAGGA 1786008 30 100.0 36 NNNNNNNNNN .............................. TATGCCTTTATACCGTGATCCGGGAAGACAATGAGT 1786074 30 100.0 39 NNNNNNNNNN .............................. AACGCAGGCCCCTTTGATTCATTCTGACCAGTTGAGCTC 1786143 30 100.0 34 NNNNNNNNNN .............................. GCTTTTCCAGCCTTGCTGACACCCTCTATTATAT 1786207 30 100.0 34 NNNNNNNNNN .............................. TTGTAGGGTGCATCTCAGATAAAGGCGGTACAGG 1786271 30 100.0 36 NNNNNNNNNN .............................. GAAGAACGCAAAATGGTGTTTCGTTACGTACCCTAA 1786337 30 100.0 36 NNNNNNNNNN .............................. TATTGCTATTCTATCCCCTAAATTAGCCACAAGAAT 1786403 30 100.0 36 NNNNNNNNNN .............................. GGTATCTTCCCAAACACAGCGTCAATTACCTCGGTA 1786469 30 100.0 35 NNNNNNNNNN .............................. GACTGATGCAGGTAATATCCCTATGGATTTACCAT 1786534 30 100.0 36 NNNNNNNNNN .............................. ATTATAAGGGTATATGGGAAAGATGGGTCAAAGATA 1786600 30 100.0 36 NNNNNNNNNN .............................. TGATCAGGTCTTTTTCTACCCTGAACAAAAATCTTG 1786666 30 100.0 35 NNNNNNNNNN .............................. TATAAGTAAAGAAAACACATAATCATAATTAAAAC 1786731 30 100.0 35 NNNNNNNNNN .............................. GTTCCAGCCGAAATGGGCCTTAACATAGACGGTTA 1786796 30 100.0 37 NNNNNNNNNN .............................. TCTTTTATGCCCTGCTTTTTATTTTTGCTGGAGTACA 1786863 30 100.0 37 NNNNNNNNNN .............................. GGTAAGAACCTACAATGAATACGACGAGGCCAGCGAA 1786930 30 100.0 38 NNNNNNNNNN .............................. GCTGTTTTTGAGGAACGGGTTCTGAATCCTATTCCTGA 1786998 30 100.0 36 NNNNNNNNNN .............................. TGAATCAAACGCCTTTGCATGGGGCGTTGCAGCTGT 1787064 30 100.0 35 NNNNNNNNNN .............................. GACTGGTGCTTTGTTACGTACCCTACACCCCTTCA 1787129 30 100.0 36 NNNNNNNNNN .............................. GCTACTTCGAGGCGCAGGCGGAGGCCGAGCGCCAGG 1787195 30 100.0 34 NNNNNNNNNN .............................. GTAGAAGGTGGCTTTGTTCATCAGCCATTTGGCG 1787259 30 100.0 35 NNNNNNNNNN .............................. TGTGCTTGAGGCTTGCATCGAAAAGTACCAAAACA 1787324 30 100.0 36 NNNNNNNNNN .............................. CTTGTCGGGTTCATATCGGCGTCAGCACTTTATATC 1787390 30 100.0 39 NNNNNNNNNN .............................. GGATGACAGCGGTTTTCAATTTACCCGCATAAAAACAAG 1787459 30 100.0 35 NNNNNNNNNN .............................. CCACTTGCCGTTTCCTCGCCATCGAAAAGAATCGA 1787524 30 100.0 35 NNNNNNNNNN .............................. GCAGCTCTTTCTAACATAAAATGAGTTGCATTGTA 1787589 30 100.0 36 NNNNNNNNNN .............................. GATTTGGTTGCATTCGTAACCATTTCATCAAAAAAA 1787655 30 100.0 37 NNNNNNNNNN .............................. CAAGCGTTCGTATCATGACGAAATATGTTTCTATCAT 1787722 30 100.0 36 NNNNNNNNNN .............................. GGAGCAGGAGGCTCAAGACATCGACTGGCTGAGTGA 1787788 30 100.0 36 NNNNNNNNNN .............................. CATTATGAACGATGCTGACTGGAATACTCACATTGT 1787854 30 100.0 35 NNNNNNNNNN .............................. CCTGCGCTTGTTCGCCCGGTTTACTATCTGCAAAA 1787919 30 100.0 36 NNNNNNNNNN .............................. TACTTTTTCTGCCTTTACCCATCTTACATAATCTAC 1787985 30 100.0 37 NNNNNNNNNN .............................. GCAACCCTGCACTGCAGCTTGTGATAGCTAAAGCTGA 1788052 30 100.0 36 NNNNNNNNNN .............................. GCTTCAACTTTTTCTTGTTTTTTCTTTGCAACTTTT 1788118 30 100.0 35 NNNNNNNNNN .............................. ATGGAAAGCCTTAGCCGTACCGCGTAAGGAGTTTA 1788183 30 100.0 35 NNNNNNNNNN .............................. CACCCAAACACACATCCGAGGTCAAATTTTTGAAA 1788248 30 100.0 36 NNNNNNNNNN .............................. GTGAGCTGATATGCATTACAACCTTGCCGGTTTTAT 1788314 30 100.0 37 NNNNNNNNNN .............................. GAAGGAGGAAGGCATGACATGACCAAACAGGAAGCAT 1788381 30 100.0 35 NNNNNNNNNN .............................. GCCGAGTTTCGCCACGAGTGCCTCATATTCGGCAT 1788446 30 100.0 36 NNNNNNNNNN .............................. AATAGCTCCAAACATAGATGTAATGTTTCATGATAG 1788512 30 100.0 36 NNNNNNNNNN .............................. CAGTGCTGAGCGCTATACATACGACAAACGAGGGCC 1788578 30 100.0 37 NNNNNNNNNN .............................. GTTATCACCTTTTGAGGAACCGGTGGACTATGTAAAA 1788645 30 100.0 35 NNNNNNNNNN .............................. TGTTTCCGGTGTCATGTATGCGCCGTGTTTTCTGA 1788710 30 100.0 36 NNNNNNNNNN .............................. GCACCCGGTGGAACATTCCCGACTGGAAACATTTAC 1788776 30 100.0 37 NNNNNNNNNN .............................. TCATGGCTGGATGAAGAGGCACAGAAGGTCTGGAAGA 1788843 30 100.0 35 NNNNNNNNNN .............................. TCTAACCCTTATCGGTATTATATGGTCTACTTCTG 1788908 30 100.0 37 NNNNNNNNNN .............................. GTTGTATTACGTTTTCCAAAAACTCTTTTAGAGAAAG 1788975 30 100.0 35 NNNNNNNNNN .............................. TGGTCAAAATACTTTTGTCCTGTCACTTTCGCAAT 1789040 30 100.0 36 NNNNNNNNNN .............................. ATTTTCGCGTGAATGCGTTTCCCAATAATTTTCTGA 1789106 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 64 30 36 ATTTACATTCCAATATGGTTAGATTCAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:73.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [616,289] Score: 0.18/0.18 # # Final direction: R [0.18,1.05 Confidence: HIGH] >NC_020133 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 5896531 19 100.0 110 NNNNNNNNNN ................... GGCCGGCGGCAGCTCAACGGGTGGCGCCGGCGGCACCGGCGGCGCGGGTGGCGCCGGCGGATGGCTATTCGGCCCGGGCGGGGTCGGTGGGGCCGGCGGCAGCTCCAGCA 5896660 19 100.0 86 NNNNNNNNNN .......C........A.. TGTTGGCGGGGCCGGCGGGCTCTTCGGCGGCGGCGGGCTCGGCGGGGCCGGCGGCGCCGGTGTCAGTGCGAGCGGTGGGGCCGGTG 5896765 19 100.0 74 NNNNNNNNNN ................... GGCGTTGGCCGGGTTTCTCGGCGCCGGCGGCGGCGACGGTGGGGCCGGCGGGTCCGGCGTCAATCACGAGGGCG 5896858 19 100.0 62 NNNNNNNNNN .......C.....T..... GGCGGGCGGACTGATCGCCGGTACTGGCGGCAACGGTGGGGCCGGCGGCACCGACGCATACA 5896939 19 100.0 29 NNNNNNNNNN ..CGA..C..G........ GGCCGGCGGCGACGCCGGGCTGCTGTTCG 5896987 19 100.0 41 NNNNNNNNNN ..AG...C..G........ GACCGGCGGAACAGGCGGCACCGACATGTCTGACAGTGGGG 5897047 19 100.0 20 NNNNNNNNNN ..A....C..G........ CAATGCCGGGCTGCTGTTCG 5897086 19 100.0 38 NNNNNNNNNN ..AG...C..G........ GGCGGGCGGCGCGGCCGTCGCCCTCAACGACGTCGGAG 5897143 19 100.0 26 NNNNNNNNNN .T.....A..A........ CAACGCCGGGCTGTTCGGCAACGGTG 5897188 19 100.0 50 NNNNNNNNNN .G.T...C..A.T...T.. CGTCGGCGCCGGCGACGGCGGGGCCGGGGGCCGGGCCGGCCTGGTGATCG 5897257 19 100.0 32 NNNNNNNNNN ..AA...C........T.. CGCCGGTGGCGAGAGCTTCGGTTTCGGTGCGG 5897308 19 100.0 35 NNNNNNNNNN ...T............... CAACGGCGGCAACGGCGTGCTGATCGGCAACGGCG 5897362 19 100.0 26 NNNNNNNNNN ..AA..CC...A....... CACCGGCCTGAGTACCGGCAGCACGG 5897407 19 100.0 1 NNNNNNNNNN .......C..GAT.A.... NNNNNNNNNN ========== ====== ====== ====== ========== =================== 14 19 48 GCGCCGGTGGCGCCGGCGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [,1] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [9-24] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [10.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [639,1213] Score: 0/0.18 # # Final direction: R [0.41,0.64 Confidence: LOW] >NC_020133 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================== ====== 2378294 21 100.0 42 NNNNNNNNNN ..C..AG....T..A.....C CCGGTACCGCCGTCTTTACCGCCGATTCCGGCGCCGCCTTCG 2378357 21 100.0 33 NNNNNNNNNN .....AG.......A...... CCAGAGGCGCCGCTGTCACCAGCGCCACCATTG 2378411 21 100.0 69 NNNNNNNNNN ......G.............. GCGCTGCCGGCGCTACCCCCGGTGCCGCCGGTCCCGGCGGTACCCCCGATTCCGCCAGTGCCGCCTGTC 2378501 21 100.0 24 NNNNNNNNNN ...............A..G.. CCGGTACTGCCGTTGCGGCCGTCG 2378546 21 100.0 60 NNNNNNNNNN .......C...A......... CCGTTTCCGCCGTGGCCGCCGGTGCCGTTGGTGCCGCCGGGGCCGCTGTTGCCGCCGGTG 2378627 21 100.0 42 NNNNNNNNNN ..................... CCGGCAAAGCCGCTGTCACCCACGGCGCCCTTGTCGCCGTCG 2378690 21 100.0 33 NNNNNNNNNN ..................... CCGGTTCCGCCGGTGCCGGCGTTGCCGTTGGTG 2378744 21 100.0 24 NNNNNNNNNN ..................... GCCGCGCCGCCGGATCCGGCGTTG 2378789 21 100.0 45 NNNNNNNNNN ......C...........G.. CCGGTGCCGCCGGCTTTGCCTTGACCGACTCCGGAGGCGCCGTCG 2378855 21 100.0 42 NNNNNNNNNN .......C...A......... CCGTTTCCGCCGTGGCCGCCGGTGCCGTTGGTGCCGCCGGGG 2378918 21 100.0 60 NNNNNNNNNN ....T................ CCGGCACCGCCGGTACCGCCGGCAAAGCCGCTGTCACCCACGGCGCCCTTGTCGCCGTCG 2378999 21 100.0 78 NNNNNNNNNN ..................... CCGGTTCCGCCGGTGCCGGCGCTGCCGTTGGTGCCGCCGCCACTAGCATCGCCGCCGGTGCCGGCCGCGCCGCCGGAT 2379098 21 100.0 81 NNNNNNNNNN ...G...........T..... CCGGTGGCGCCGGTGCCGCCGGCTTTGCCTTGACCGACTCCGGAGGCGCCGTCGCCGCCGTCGCCACCGGTGCCGCCGTTT 2379200 21 100.0 96 NNNNNNNNNN .......G............. TTGGTGCCGCCGGGGCCGCTGTTGCCGCCGGTGCCGCCGGCACCGCCGGTACCGCCGGCAAAGCCGCTGTCACCCACGGCGCCCTTGTCGCCGGCA 2379317 21 100.0 69 NNNNNNNNNN ..................... CCGGTTCCGCCGGTGCCGGCGCTGCCGTTGGTGCCGCCGGTTCCGCCGGTGCCGGCCGCGCCGCCGGAT 2379407 21 100.0 81 NNNNNNNNNN ...G...........T..... CCGGTAGCGCCGGTGCCGCCGGCTTTGCCTAGGCCGACTCCGGAGGCGCCGTCGCCGCCGTCGCCACCGGTGCCGCCGTTT 2379509 21 100.0 96 NNNNNNNNNN .......G............. TTGGTGCCGCCGGGGCCGCTGTTGCCGCCCTTGCCGCCGGCACCGCCGGGTCCGCCATCGCTGCCATCGCCGCCGGTTCCGCCGTTGCCGCCGGCA 2379626 21 100.0 60 NNNNNNNNNN ..................... GCGTTGCCGGTGCTGTCGCCGGTGCCGCTCAGGCCTCCCGCGCCAGCGTTGCCACCGGCC 2379707 21 100.0 105 NNNNNNNNNN .....T.C.......T.T... CCGGCTTGGGCTAAGCCGCCGGCCGCGCCGTCGCCGCCTTTGCCACCGTTCCCGCCGGATCCGCCCGTGCCGGGTTCACCGAATTGACCGGCGTTACCGCCGCCG 2379833 21 100.0 78 NNNNNNNNNN ......GC...C...T..... CCGGTGTGGCCGCTGCCCGCCGCGTCACCGGCGGCTCCGTTGCCGCCGTTGCCGCCGTTGCCGCCGTTGCCGAATCGG 2379932 21 100.0 1 NNNNNNNNNN ...G...CT.....CT..... NNNNNNNNNN ========== ====== ====== ====== ========== ===================== 21 21 60 CCGCCGTTGCCGCCGGTGCCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [14-17] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [26.7-26.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [963,2819] Score: 0.18/0.18 # # Final direction: R [0.41,0.55 Confidence: LOW] >NC_020126 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 9732076 37 100.0 34 CGGCCCACTG ..................................... GCGACTTCTGGGGCGAGTGCGCGCCGGACGTGGT 9732147 37 100.0 34 CGGACGTGGT ..................................... TCAACCTCGCGGAGGACGCCACGCCCATCGTGCC 9732218 37 100.0 35 CCATCGTGCC ..................................... GAGGGCGCCCCGGAAATCTGCCCCGAGTGCGCCGT 9732290 37 100.0 36 AGTGCGCCGT ..................................... ACGCAAGCCTGCGTCCTGAACTGGTCGGCACGAAGT 9732363 37 100.0 33 GGCACGAAGT ..................................... GTCCGGTACCGGGGATGACGGATGTCGTCGGAG 9732433 37 100.0 34 GTCGTCGGAG ..................................... GCGATGTGCCGCTGGAGCTGGCCGAGCGCGAGGT 9732504 37 100.0 34 AGCGCGAGGT ..................................... AGATGTACCAGGGCGGAGTCATGCCACCTGAGCC 9732575 37 100.0 34 CACCTGAGCC ..................................... CGAGCCACGCGGCCTTGTCGCTGCGCAAGTGGGG 9732646 37 100.0 33 GCAAGTGGGG ..................................... AGCAGGCACAAGCTCCGCATGTATTGCCTCCAT 9732716 37 100.0 36 TTGCCTCCAT ..................................... TCTCCGGGTTCCGGGAGCGGTTCCCCGCCCCTCTCG 9732789 37 100.0 33 GCCCCTCTCG ..................................... GATGGGCCACGTCATCGCCAAGTCGATTGCAGA 9732859 37 100.0 35 CGATTGCAGA ..................................... TGCCCAAACACGGTGATGACCGGCGCGAGTCCCTC 9732931 37 100.0 32 CGAGTCCCTC ..................................... TACGCCGCGACCGTGGTCGGGCCAGGCGCGAC 9733000 37 100.0 CAGGCGCGAC ..................................... CCTGCACCTG ========== ====== ====== ====== ========== ===================================== 14 37 34 GTTTCAACCCACGCTCCTCGCGGTCACGAGGAGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [7,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.30,-10.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [25.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [621,205] Score: 0.18/0.18 # # Final direction: R [0.55,0.64 Confidence: LOW] >NC_020163 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3609809 29 100.0 32 CCAGTGCGCC ............................. TGTACGCGGCGAGTTTTAGCGACAGGTCATCC 3609870 29 100.0 32 CAGGTCATCC ............................. GGATCTGCCAGCGCCTCTGCGGGGCGGTAAAC 3609931 29 100.0 32 GGCGGTAAAC ............................. TACGCCAGCCACCTGCTTCGCCAGCCGTTCGG 3609992 29 100.0 32 AGCCGTTCGG ............................. GGTTTGCTCCCATGTTTTGCCGGTAATCCGCA 3610053 29 96.6 32 GTAATCCGCA T............................ AAAGCACGGAATTTTTACAGCGCGTTAGATCC 3610114 29 100.0 32 CGTTAGATCC ............................. TCACGGTAGCGCCACTGCGCGTCGGTGACGGG 3610175 29 100.0 32 CGGTGACGGG ............................. AACGAACAGGGATTTGTCGGCAGTTTCTTTAC 3610236 29 100.0 32 GTTTCTTTAC ............................. ATAATTCGCAAATCAATATATATTTTGTCCGT 3610297 29 100.0 32 TTTTGTCCGT ............................. AATTGCGGATGCTCCCGGAATTGCGCGGGCAA 3610358 29 100.0 GCGCGGGCAA ............................. ACTAAGCATAC ========== ====== ====== ====== ========== ============================= 10 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [83,98] Score: 0/0.18 # # Final direction: R [0,1.51 Confidence: HIGH] >NC_020163 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3636086 29 96.6 32 GTTATATGGT -............................ ATATACAGCAAACCTTCAGAATGCATTCCGGG 3636147 29 100.0 32 GCATTCCGGG ............................. GCCGTCTGCCTCCAGCCCAGCCCTGGATATTT 3636208 29 100.0 32 CTGGATATTT ............................. TGGTTCACTCACGCAACGTCTGAGCGCGTTGA 3636269 29 100.0 32 AGCGCGTTGA ............................. AGGGCCGCCGCTACCCCAGAAGTGCCACTCCC 3636330 29 100.0 32 TGCCACTCCC ............................. GCGTATCGTCTCGTTATTGCGCCGCCCCAACT 3636391 29 100.0 32 CGCCCCAACT ............................. AGTATGCGTTCAATCACTGTCAGGCCTACTTC 3636452 29 100.0 32 GGCCTACTTC ............................. AGTTGCCCGATGGACACTCCCAGACCATCAGC 3636513 29 100.0 32 GACCATCAGC ............................. ACTAAACTTAATGATGGCCGTTACAGCGTGGA 3636574 29 100.0 ACAGCGTGGA ............................. TGTAAACATA ========== ====== ====== ====== ========== ============================= 9 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,6] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [640,340] Score: 0/0.18 # # Final direction: R [0,1.65 Confidence: HIGH] >NC_020134 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 205546 29 100.0 36 GGTTTTACGG ............................. GCAGAAGAAGTCAGAAAACAGCTTCACGGGAACAGG 205611 29 100.0 39 CGGGAACAGG ............................. GTATAACTGTATAGAAAATCAGGAATACGATTGCCGTTA 205679 29 100.0 37 ATTGCCGTTA ............................. GGGAAGCAGCCTTTATGCGGGTAACGCTGGAGGAAAC 205745 29 100.0 37 TGGAGGAAAC ............................. GGTTTTCATTTATTTTCAAATGATTCCTCGGCAAACC 205811 29 100.0 39 TCGGCAAACC ............................. GTTAATTGAACACTTACATAAACGGTTACCCAAACCAGG 205879 29 100.0 35 CCAAACCAGG ............................. GATAAATGTTGCCTGACGGAAGGGTTTTAGCGGGC 205943 29 100.0 37 TTTAGCGGGC ............................. GAGAAACTCCCCAAATATGAGAAAGTTGCATTGATAA 206009 29 100.0 38 GCATTGATAA ............................. GTAAAAATTCCCTCATAGAACTGACGTATTTCGTTTGA 206076 29 100.0 36 TTTCGTTTGA ............................. GCCGACAGATTGCGGCAGCGTTTGGCGTGAAGATGC 206141 29 100.0 36 GTGAAGATGC ............................. GTGGCACAAAATGTTAATTACAGCAGGGCAATCTCA 206206 29 100.0 36 GGCAATCTCA ............................. GGGCTTAAAAGGTGGTGAATAGGTTTGAATGGCAGG 206271 29 100.0 39 GAATGGCAGG ............................. GGAATTTCGCAACTATCCTTGACGATATACCTGCATTGG 206339 29 100.0 38 CCTGCATTGG ............................. GTTTGAATCGCGGTACAGAACAGTTTCTTTTCTGTCAT 206406 29 100.0 37 TTTCTGTCAT ............................. GATGATAGCATCGTCATAGTACCTTTCTGCTGTTGCG 206472 29 100.0 36 TGCTGTTGCG ............................. GTCTCGAATTCCTTATCCCTCGCCAGAGTTCCGGGA 206537 29 100.0 36 AGTTCCGGGA ............................. CTTGGTTAAATCCCTGATAATTTTACCAACTTTTGA 206602 29 100.0 35 CAACTTTTGA ............................. CGGCATTGCCCGGCAACCTCGGGACTTACTTTTGC 206666 29 100.0 38 TTACTTTTGC ............................. CACAGCCAAACCGGGAAACAACTTGCTCTCGGCAGGAA 206733 29 100.0 37 TCGGCAGGAA ............................. CGGTATCACCCCAGAAAATGAGAACGCTTCCCGGTGT 206799 29 100.0 37 TTCCCGGTGT ............................. CTCATTAGGCTCCATAGTCTCAAGTTCTTTCTGCATG 206865 29 100.0 TTTCTGCATG ............................. CAGTCTTATG ========== ====== ====== ====== ========== ============================= 21 29 36 GTTTGAAGTTTACCTATAAGGAATTGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.41%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.00,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1259,388] Score: 0.18/0.18 # # Final direction: F [5.05,0 Confidence: HIGH] >NC_020134 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2320107 30 96.7 36 AGTAATTTAT .......C...................... GTCAGTTGATAACAGGAATATTTATGAAGTTGTAAT 2320173 30 96.7 37 AAGTTGTAAT .........................C.... AGTTGCGGAATTAAAATACGTGTTTTCACGCGGTGAA 2320240 30 100.0 35 ACGCGGTGAA .............................. TATCAAAAGAAGAAGCCAAAACAGCTGTTGATCTG 2320305 30 100.0 TGTTGATCTG .............................. CTCAGATTGG ========== ====== ====== ====== ========== ============================== 4 30 36 GTTTCAATTCCTTATAGGTAAACTTTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:73.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [731,284] Score: 0.18/0.18 # # Final direction: R [0.45,5.28 Confidence: HIGH] >NC_020134 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2321817 30 100.0 35 TCTTCTTCAC .............................. CAACCATCATTTGTGCAGCTTTCATTCATTTACTC 2321882 30 100.0 37 TCATTTACTC .............................. GATACGATTATGAAGTGCGTTTAGAATGCAACAACTG 2321949 30 100.0 36 GCAACAACTG .............................. AGAGTGGACGGCGGTCATTATCATGACCGCTTAGAA 2322015 30 100.0 36 CCGCTTAGAA .............................. GCATTTTATGCTCGTAGGGTACATCTCAGATAAAGG 2322081 30 100.0 35 CAGATAAAGG .............................. GACTGATGCAGGTAATATTCCTATGGATTTACCAC 2322146 30 100.0 36 GATTTACCAC .............................. GATGCCGTATGAGGCATACCTAAACGCCCGAGAATC 2322212 30 100.0 36 CCCGAGAATC .............................. GGTATCCAGCGCCACAATCACCTTTGCCTTGTCAAA 2322278 30 100.0 36 CCTTGTCAAA .............................. ACAAAGTCTATTTCTTCGGGAGTTTGAAATCTCCAA 2322344 30 100.0 35 AAATCTCCAA .............................. TAAGTATGGTGACGGTGCAATGAACCTTTGGAGTT 2322409 30 100.0 35 CTTTGGAGTT .............................. GCAGTAGCACTCATATAATCACCTCACAAATAAAA 2322474 30 100.0 36 ACAAATAAAA .............................. TGAATGTATGCTATACCGGGTACGTTTACAAATTTT 2322540 30 100.0 36 TACAAATTTT .............................. CATTAAGCAATATATTGTATAGTATAGCATAAAAAT 2322606 30 100.0 37 GCATAAAAAT .............................. AAAAAGTCGCATCACTTGAAGAAGGCGCAATAAAATA 2322673 30 100.0 36 CAATAAAATA .............................. CTTCGTTTTCAAGCTTGTCCATCTGTGATATAATTT 2322739 30 100.0 GATATAATTT .............................. CCGTAAAACC ========== ====== ====== ====== ========== ============================== 15 30 35 GTTTCAATTCCTTATAGGTAAACTTCAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [254,589] Score: 0.18/0.18 # # Final direction: R [0,5.05 Confidence: HIGH] >NC_020134 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 784774 30 100.0 34 GGTTTTACGG .............................. TCACCATCGCCTTTACTATACAAGTGTGTTCCTC 784838 30 100.0 36 TGTGTTCCTC .............................. ATTTCGGTGATGCACCCCACGAGCATAAAATGCTCG 784904 30 100.0 35 AAAATGCTCG .............................. GTTAGGTTTCTTTTTAGATTCTATGATACCTTTTA 784969 30 100.0 36 ATACCTTTTA .............................. TCAAAAATCTATATCACTTTTTACTATATCCCTTGT 785035 30 100.0 36 TATCCCTTGT .............................. ATCGATAATGTCAATTCTACCTAAAGGGTAATAATC 785101 30 100.0 36 GGTAATAATC .............................. GTGTTTTTTAATATATTAAGTAATGTTTTATCATTT 785167 30 100.0 36 TTTATCATTT .............................. CGTTAATTAATTTTTCATTCTTCATGGTTTTAACCT 785233 30 100.0 35 GTTTTAACCT .............................. TCCCCAACGCTCAGCAAGTTTAACCTCCGATGTGA 785298 30 100.0 36 TCCGATGTGA .............................. TGAGCGCATCAGCGAACTCATGGAAGAAGAGCGCAG 785364 30 100.0 35 AAGAGCGCAG .............................. GCAGTAGTCCGTATGCTGGTAACATCCGGCCTCTC 785429 30 100.0 35 CCGGCCTCTC .............................. CATAAATAATTATTTAGAGGCGCCTCCTGAAAGGC 785494 30 100.0 36 CCTGAAAGGC .............................. TTACATGTTGCTCATACAGTGGAACAGGTACCGTAA 785560 30 100.0 33 GGTACCGTAA .............................. CTTTAGCGTCAAACATTACATATATCCCTCTAC 785623 30 100.0 35 ATCCCTCTAC .............................. CGAACACCAGGACCACAGCAAAGCGGTGCGTGATG 785688 30 100.0 34 GTGCGTGATG .............................. CCTCGACATTGGATATAGGCCCAAATTCACAAGA 785752 30 100.0 34 ATTCACAAGA .............................. CCTTCTGAAAGGATAATAAAAATAGCCGTCGCAA 785816 30 100.0 35 GCCGTCGCAA .............................. ATGATCGTTGTGGAAAACGAATACTTCGTTTCCAC 785881 30 100.0 TCGTTTCCAC .............................. TTATTAAAAGC ========== ====== ====== ====== ========== ============================== 18 30 35 GTTTAAAGTTTACCTATAAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:73.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.00,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [650,629] Score: 0/0.18 # # Final direction: F [4.87,0 Confidence: HIGH] >NC_020134 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 789140 30 100.0 33 GTTTTTACGG .............................. GATAAAACAAGCTACCCCTGAAGTACTCCATCG 789203 30 100.0 35 TACTCCATCG .............................. CAAATATTCTAAATCCAATCGCAAAAATTGATATT 789268 30 100.0 35 AATTGATATT .............................. CGGGGAAACATTAACGTTATTAAATCAAACACAAA 789333 30 100.0 35 CAAACACAAA .............................. TAGTGAAAGCAGAAAACGCAACTTAGGCAAAACGA 789398 30 100.0 36 GGCAAAACGA .............................. GAAGCCGGCACTAAATATGTTTCCCATGTGTCAAAA 789464 30 100.0 35 TGTGTCAAAA .............................. CGTTTTTTGACGTAGATAGGTTGCTTCGGTCGCCC 789529 30 100.0 TCGGTCGCCC .............................. GTGTTGGTATAACCCCCTCCACACAACCACATCGC ========== ====== ====== ====== ========== ============================== 7 30 34 GTTTGAAGTTTACCTATGAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.00,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [355,423] Score: 0/0.18 # # Final direction: F [5.14,0 Confidence: HIGH] >NC_020210 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 327656 30 100.0 37 CATTGTGTGG .............................. TATCTCCCTTTTCTCTTTCTTGTAAAGCTAAATCAGC 327723 30 100.0 37 CTAAATCAGC .............................. ATACAAGAAGACCTAAGGTAGAATGACCAGAATGGAA 327790 30 100.0 38 CAGAATGGAA .............................. ATTTTTGATTCTAGTATTTCAGAGACGATGGAAGCAAT 327858 30 100.0 36 TGGAAGCAAT .............................. ATTTCTTCGCCGCGTTCCCAAAGGATTCGATAATAT 327924 30 100.0 37 TCGATAATAT .............................. TCAGGAGCCTCATTTTCATATCGGGGAACTGGATCAA 327991 30 100.0 ACTGGATCAA .............................. CGAAAAAAGGC ========== ====== ====== ====== ========== ============================== 6 30 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.80,-0.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [198,1038] Score: 0.18/0.18 # # Final direction: F [5.37,0.18 Confidence: HIGH] >NC_020210 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 329986 31 100.0 34 CATTTTTGGG ............................... CTCGTTTTGTTTACTGTCATGATTTCTTCCATGA 330051 31 96.8 36 TCTTCCATGA ..............................C AATTAATTTATTTTCTTCTTTTACGCAAGGAAAAAC 330118 31 100.0 AAGGAAAAAC ............................... TTTTGCTTGC ========== ====== ====== ====== ========== =============================== 3 31 35 GTTTTTATCGTACCTATGAGGGATTGAAACT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.52%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 93% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.80,-0.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [184,625] Score: 0.18/0.18 # # Final direction: F [5.78,0.18 Confidence: HIGH] >NC_020210 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 339640 30 100.0 38 CATGGTTTGG .............................. GGTTGTGGCTCGTTTGATCAATGAATAAGATATAAAAA 339708 30 100.0 36 GATATAAAAA .............................. CCAATCATTGCATATAGGCCTTTTTCTTGGAATAGC 339774 30 100.0 39 TTGGAATAGC .............................. AAAGCTAAGTATACCGCGTCTTTAACATTTTTTATTTTT 339843 30 100.0 35 TTTTATTTTT .............................. ACAGCTTTCATTTTCATTTAGCAACAACTCCTTGT 339908 30 100.0 39 AACTCCTTGT .............................. GCAAGAAAATGATTGAATACAAATCGACAGCACCCAAAG 339977 30 100.0 35 GCACCCAAAG .............................. AATTGACAATCATCTTTATTCATTCCTCCATTCAT 340042 30 100.0 37 CTCCATTCAT .............................. TGTGCTTACTTTTAATTCCCTTTCTGAGTTAAACCAC 340109 30 100.0 36 GTTAAACCAC .............................. ATGAACAAAAGCGGTAAATAACGCTGTTTCTTCGTA 340175 30 100.0 35 TTTCTTCGTA .............................. TGTTCCGGTTGATATTTTTCCTGCGCCCGTCTTTC 340240 30 100.0 36 CCCGTCTTTC .............................. CAAGAAACCAAAGCGCTCGCTCCGAAACGAACGGGT 340306 30 100.0 39 ACGAACGGGT .............................. ACCTGATAATCGTTAGTTGACGGGTTCATCGCTGCCATC 340375 30 100.0 37 CGCTGCCATC .............................. TCCATCCGATGAAGATGAATGTTGCGAAAGTTTTGGA 340442 30 100.0 34 AAGTTTTGGA .............................. CGTGAGCAAACGTTTGAGGTGGTTGAGTGTGCAA 340506 30 100.0 34 GAGTGTGCAA .............................. CAGCAACGATTGGGATTATGCAACGCGAGCGCAG 340570 30 100.0 39 GCGAGCGCAG .............................. ACGGCAAACCCTAGCGCTCCGCCAATCGCAGTGGCCGCC 340639 30 100.0 37 AGTGGCCGCC .............................. GCAGAAAATGCCTTTTCCACTTCCGCCAACACTCTTT 340706 30 96.7 AACACTCTTT .........................A.... TTATCCAACT ========== ====== ====== ====== ========== ============================== 17 30 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.80,-0.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [58.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [182,219] Score: 0/0.18 # # Final direction: F [6.05,0 Confidence: HIGH] >NC_020210 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2018818 30 93.3 35 GGGAGATAGG --............................ ACAATAATCAGTTCAAAATCTTCTTCGGTTTGATT 2018883 30 100.0 38 CGGTTTGATT .............................. GGAGGAATTACAACGGCAAGCCGCTTTACTTGCTTTCT 2018951 30 100.0 36 CTTGCTTTCT .............................. AACGGTAGCAACGGAACTCGATATGGCGGTTGTAGC 2019017 30 100.0 36 CGGTTGTAGC .............................. ATGTCGAGGAAGAGATTAGAACTATTAAAAACGCAA 2019083 30 100.0 37 AAAAACGCAA .............................. AGAGGTTGGAAAGCCTCGAAATGTATCTGAAAGATAT 2019150 30 100.0 36 TGAAAGATAT .............................. ACTGCATTTTGTTCTGTCGCTACTGTCTGATTCATA 2019216 30 100.0 39 CTGATTCATA .............................. AAATGACGTTATGAAATCACTTGAAAAGCAGGGATTAGC 2019285 30 100.0 38 AGGGATTAGC .............................. TTGAAGAATTGATCAAGGAGGTGGAATCACGACTAGCA 2019353 30 100.0 35 ACGACTAGCA .............................. GTCTTTTCATCCCTGCTAAAAATAGAACATCGTTA 2019418 30 100.0 35 AACATCGTTA .............................. AAAAATATAGATGTCATTCCGCATGACGATGTGTT 2019483 30 100.0 38 ACGATGTGTT .............................. GTAAAAGAAATCGTAAACTGGATGGTCTGTGATAAAGA 2019551 30 100.0 GTGATAAAGA .............................. CCCCAAACCA ========== ====== ====== ====== ========== ============================== 12 30 36 GTTTCAATCCCTCATAGGTACGATAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [215,183] Score: 0/0.18 # # Final direction: R [0,5.55 Confidence: HIGH] >NC_020210 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2027629 30 100.0 36 CGAGTGAGTA .............................. CTGGGTAACTGGTCAAATTCCAGTGGAAGGTCACTA 2027695 30 100.0 35 AAGGTCACTA .............................. CGGAGAGAAATATGGTCCTCTGTTGGATAAACATT 2027760 30 96.7 35 GATAAACATT .................A............ CATCGTTATATAATGAGTGTTGGTTATTGTCGCAT 2027825 30 100.0 43 ATTGTCGCAT .............................. CTATTGGCGAAAGAAAGTGACATATTTCCTCAATCAAATGATT 2027898 30 100.0 36 TCAAATGATT .............................. GTAATACTTTTTCAAAGGATTGCGAAGGATTGCCTT 2027964 30 100.0 35 GGATTGCCTT .............................. TCGTCTTGCCGGTCTTTTGCTCTTTAACGACGATG 2028029 30 100.0 38 AACGACGATG .............................. TATGCCTGATATTGTGCTTGCCGATGAAGTGCAGTTTT 2028097 30 100.0 38 GTGCAGTTTT .............................. GTTCTCCCGTTCCCACTGGGCAAGCGCGGCAACGAACG 2028165 30 100.0 37 GCAACGAACG .............................. ATGCTGGTAGGGCAACAAAATATGCCCAATATATTGC 2028232 30 100.0 38 AATATATTGC .............................. TGAAAAAATATCGTAATGAAACCTGCAAAATGTGCCGT 2028300 30 100.0 AATGTGCCGT .............................. CCAAAGAATG ========== ====== ====== ====== ========== ============================== 11 30 37 GTTTCAATCCCTCATAGGTACGATAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [53.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [167,191] Score: 0/0.18 # # Final direction: R [0,5.55 Confidence: HIGH] >NC_020229 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 359930 36 100.0 30 NNNNNNNNNN .................................... ATGTCAAGGATTGGAACAGTTTGCCGACGT 359996 36 100.0 30 NNNNNNNNNN .................................... CTTGAAGAAGTTAAGGCACAAACTCCAACG 360062 36 100.0 30 NNNNNNNNNN .................................... TAACACGTCTAAAAGCGATAAACGAGAATA 360128 36 100.0 30 NNNNNNNNNN .................................... TGTCACTAGCGGAGTCAATGGATCGTATTA 360194 36 100.0 30 NNNNNNNNNN .................................... TCAGACCTGAACGTTTACAACCTATTTACG 360260 36 100.0 30 NNNNNNNNNN .................................... GATGCTGAGGAAACGAAGCATAGAACGTTT 360326 36 100.0 1 NNNNNNNNNN ...........CG.C..C......A.CAG..TC.CG NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 7 36 30 GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [26,66] Score: 0/0.18 # # Final direction: F [0.41,0 Confidence: MEDIUM] >NC_020230 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =========================== ====== 2235719 27 96.3 34 CACGGACGAG ..............G............ CTCGGGGCTGTGGCTGCTGTCGGTAACGCAGGCG 2235780 27 92.6 34 AACGCAGGCG ..............GA........... CTGCTGGTGGTCGAACTTCTCGTCCAACCACACC 2235841 27 92.6 34 CAACCACACC ..............GA........... CGGCCCACGTGGTCTCGGTGCTCTGGTAGGTGGC 2235902 27 74.1 38 GGTAGGTGGC ..............GA......----- AGCACCTGTTCGATTAAACGGGCTGTTCGGTGGCATTG 2235967 27 92.6 34 GGTGGCATTG ..............GA........... CCGCCGAACCCGAACCGGGCGGACCAGTCCAGAA 2236028 27 96.3 34 CAGTCCAGAA ..............G............ CTGCTGCGCACCGAGGGTGTTTTGCCGGAGTGTG 2236089 27 96.3 34 CCGGAGTGTG ..............G............ CTCGTTTGAGCCGATCGGGCAGGTGATTGATCTG 2236150 27 81.5 38 GATTGATCTG ......................----- AGCACTGGTCGAGGAGTACGCCGACTTGTGTGGGCTGG 2236215 27 100.0 34 TGTGGGCTGG ........................... CAAGCCCATGCGTCTCACCGGGGCCCACTGTAGG 2236276 27 100.0 41 CCACTGTAGG ........................... CAACTCGAGTGCGGCGCGGGTCTCGTCCACCAGGGGCTCAT 2236344 27 70.4 34 AGGGGCTCAT --------................... CAGACCATCACCGCTTTCCCGCCGACTTCGGAGG 2236405 27 96.3 34 ACTTCGGAGG ..............G............ CGGAATCACCTACCACGAGGAAACAACCCTCGGC 2236466 27 96.3 34 AACCCTCGGC ..............G............ CTCACCCGGGCGCAGCATCGGGGTGAACGTGATG 2236527 27 100.0 39 GAACGTGATG ........................... CCACTTGGCCCCGACCGCACCTCAGCCGCGACGAGCACG 2236593 27 100.0 35 GACGAGCACG ........................... CCGCCTCACCCTTCACGTGTGGGTGGAACAAAACG 2236655 27 100.0 34 GAACAAAACG ........................... CATAGCCTTAGCAGTGGCTTTATCCGACGTGTCG 2236716 27 96.3 34 CGACGTGTCG ..............G............ CACATCCCTCGATGTGTTCACAAGCCGCGCCTCA 2236777 27 96.3 34 CCGCGCCTCA ..............G............ CGACACCACAATCGCGGTGCCGTGCTTGTGAGTG 2236838 27 100.0 42 CTTGTGAGTG ........................... CGGCGCACAAGATGACCAAGGAGGAACTCACGCTGGGCTCAT 2236907 27 70.4 41 CTGGGCTCAT --------................... CCAGCGCAGGAACACTCGCACCTGTGGAGCCTGGGCTCATC 2236975 27 74.1 34 TGGGCTCATC -------.................... CGCGGCGCAGGAACACTCGCACCTGTGGAGCCTG 2237036 27 100.0 34 GTGGAGCCTG ........................... CTCACGGGTGAGGATTGCCAGGGCGTTGCCGGCA 2237097 27 96.3 34 GTTGCCGGCA ..............G............ CTTCTTCAGCACCACGTAGATCGTCGTCGCGGTG 2237158 27 96.3 34 CGTCGCGGTG ..............G............ CTCTTCCTCGACCTGTTCGGGTGTCCAGTCCGGG 2237219 27 96.3 34 CCAGTCCGGG ..............G............ CTGCTGGTTCCTGCTATGGAGTTCGCGTCTGGCG 2237280 27 96.3 34 GCGTCTGGCG ..............G............ CTTCGTGTAATCCTGCAGCCTCCACCGCATGGTG 2237341 27 96.3 34 CCGCATGGTG ..............G............ CAACCGCAACGGAAAACAGCAACTCGCAGCCCCC 2237402 27 100.0 34 CGCAGCCCCC ........................... CGGAAATGTCCGCGGCCCTGGCAGATATCACCCC 2237463 27 100.0 34 ATATCACCCC ........................... CGTCGTTGTAGGTGCAGTCGCCGTGGATCACGGC 2237524 27 100.0 34 GGATCACGGC ........................... CTTGGCGGTGTCCTTATCCAGCCGCGTGACCTGG 2237585 27 100.0 34 CGTGACCTGG ........................... CATCAACGCCCGCCAGTTCTTCCAGACGCTCAGA 2237646 27 96.3 34 GACGCTCAGA ..............G............ CATATGCGGATCATCAGACCACCCACACAACGTG 2237707 27 81.5 38 ACACAACGTG ......................----- AGCACCCCGGCGTGCTCGGACACGCGTACCTGATCCCG 2237772 27 100.0 35 CCTGATCCCG ........................... CTTGACCCTGCGCCTGCGCACTCGACCGCGCACGA 2237834 27 92.6 34 CCGCGCACGA ..............GA........... CAGAATCGCCGTAGCGATCACACCAATAGTGGCC 2237895 27 100.0 34 AATAGTGGCC ........................... CTATGCCAGCTCGCCCTGGGAAATATCCACCCCC 2237956 27 100.0 34 ATCCACCCCC ........................... CGAGCTTTGGGCGGGCTCTGGTGAATGACCTGGC 2238017 27 100.0 33 ATGACCTGGC ........................... CTGGATGTCCACCTTGTCGGTGCTGTCCCAGAC 2238077 27 100.0 34 TGTCCCAGAC ........................... CTTGGCGTGGGTTCTTGTGGTAGGTGGTGAGTTG 2238138 27 100.0 38 TGGTGAGTTG ........................... CCTGGCGCCTGGCCTGATACAGCCGCCGGGACTCATGG 2238203 27 100.0 34 GGACTCATGG ........................... CGTGCCCTTTCTGGCGTTTGTGGCTGGGACTGTG 2238264 27 96.3 34 TGGGACTGTG ..............G............ CTGTGACGGAGTTTCCGTTGTTCGCGTAGCGCAG 2238325 27 96.3 34 CGTAGCGCAG ..............G............ CGTGAAGGAGGGTGCCGAATGACCGATGTCATGA 2238386 27 100.0 42 GATGTCATGA ........................... CTGGGTCGAGGAGTACGCCGATTGTGGTGGGTGGGGGCTCAT 2238455 27 70.4 34 GGGGGCTCAT --------................... CTGGTGGCGGTAGCCCGCCCCCGGTAGGTGGCGG 2238516 27 96.3 34 TAGGTGGCGG ..............G............ CCTAGGGGAAATGGATATTCTCCATTCCGCGCAC 2238577 27 100.0 37 TTCCGCGCAC ........................... CAAGAAGCAGCCAGCGACAGTAGCGACAACAACGCCC 2238641 27 100.0 34 AACAACGCCC ........................... CGGCAGGGCTGGCACTTGGCGCGTCGCGCCCGGG 2238702 27 96.3 34 CGCGCCCGGG ..............G............ CCCTACCTTTTCTCCACCATTCAGTGGGGGCTCC 2238763 27 96.3 34 TGGGGGCTCC ..............G............ CTGCTCGGACGCGGCGACCTGACGCTCCAGGCTC 2238824 27 92.6 34 CTCCAGGCTC ..............GA........... CGTAATCTCAACTTCGACCGGCTCCGGCCGGTCC 2238885 27 100.0 34 CGGCCGGTCC ........................... CCACAACTTAAGGTTAGTATCCTCGGCGGTGCCG 2238946 27 100.0 35 GGCGGTGCCG ........................... CTGGTCGAATTTCTTCTCGCAGTCGGAGCAGACAG 2239008 27 96.3 34 GAGCAGACAG ..............G............ CCTCAAATCAAGCCCAGAATGGCGTGGTAAAGGG 2239069 27 96.3 34 TGGTAAAGGG ..............G............ CGCACTCGAGGTTTCATCGAATCCCTTCTTTGCC 2239130 27 100.0 34 CTTCTTTGCC ........................... CACCCACCGCACCTTGCCGGTGGGGGTGGTGCGC 2239191 27 100.0 34 GGTGGTGCGC ........................... CATTAGGCCCGCCTTCATTTCCGGTAACGCCGCC 2239252 27 96.3 34 TAACGCCGCC ..............G............ CAGTACACCGAGGACTTCAACGAGTTTTGGAGCC 2239313 27 100.0 38 TTTTGGAGCC ........................... CCCGTACAAACGATGTCCTCCTCACCCCTCGAGAGGTC 2239378 27 100.0 34 TCGAGAGGTC ........................... CGAGGAGTTTGAGCGCATTAGGGACGGCCGTGAG 2239439 27 100.0 34 CGGCCGTGAG ........................... CAAGACCTCCTGCACCTTGGCGACAACATCGCCC 2239500 27 100.0 34 AACATCGCCC ........................... CATATGGCGCAACTCCTCCATATCATGCAGGAAA 2239561 27 100.0 35 ATGCAGGAAA ........................... CTTCCCCCAAGTCGCCCTTCGGCGCCTCAGGGAGC 2239623 27 96.3 34 CTCAGGGAGC ..............G............ CTTAAGGGCATGAGTAAGGAGTTCGCTAAGAACC 2239684 27 96.3 34 GCTAAGAACC ..............G............ CCCTGTTCGAGAAGCTTTAGTCTTCTCACTCGAC 2239745 27 81.5 39 CTCACTCGAC ......................----- AGCACCACTTGCCCGACGGCACGTACCTCATGACGCCAC 2239811 27 100.0 34 ATGACGCCAC ........................... CCAACAGTTCAACCATGAGGGGTCTACACACCCG 2239872 27 96.3 34 TACACACCCG ..............G............ CTTGCTGGCCGCTTTTGTTCCGTATTTTGGGATG 2239933 27 96.3 34 TTTTGGGATG ..............G............ CATTTTCATGATGGAGTCCTTGAAGGACTTCGCC 2239994 27 100.0 GGACTTCGCC ........................... CACTGTATGA ========== ====== ====== ====== ========== =========================== 70 27 34 GGCTCATCCCCGCTAGCGCGGGGAGCA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [4,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-9.00,-10.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [10-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [38.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [336,369] Score: 0/0.18 # # Final direction: R [0.37,1.05 Confidence: MEDIUM] >NC_020245 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3042281 36 100.0 35 AGTCGTCGTA .................................... ACTTGCGCGCACAACGCATCCGCCATCCACGGGGC 3042352 36 100.0 37 TCCACGGGGC .................................... CTGAAAGGGGGACTGTGGACGAGTTCGCGCTCAAAAT 3042425 36 100.0 38 CGCTCAAAAT .................................... GCGAGAATAAGATTGTCAGGCTGGTGCTGCGTTTCCGT 3042499 36 100.0 36 GCGTTTCCGT .................................... CCGCTGGGGGCAGGCCCAGGTGGGACGGTTCCTCGC 3042571 36 100.0 36 GGTTCCTCGC .................................... CCGCTGGGGGCAGGCCCAGGTGGGACGGTTCCTCGC 3042643 36 100.0 43 GGTTCCTCGC .................................... TTCGGGAGCATGCCGCAGCTGCGGATGTGGTGCTGGATTTCGA 3042722 36 97.2 41 TGGATTTCGA ....A............................... ACGTTGGAAGCGTTTCGAGCGTACGGACTTTCCGGATGCAG 3042799 36 100.0 38 CCGGATGCAG .................................... AGGCGCTTCGACGGTGTGGGCGAGGTGACTTCGCAAAG 3042873 36 100.0 37 CTTCGCAAAG .................................... TGCGTCAAGTGCGGCACCGCCGTCATGTCGGTGTCGA 3042946 36 100.0 37 TCGGTGTCGA .................................... TGCGTCAAGTGCGGCACCGCCGTCATGTCGGTGTCGA 3043019 36 100.0 38 TCGGTGTCGA .................................... TTGAACACGCCGATACCTATTTGGTCGGGAGTGATAAA 3043093 36 100.0 35 GAGTGATAAA .................................... TGACAGGGTGCGGTGGTCGCTGATCGGCTCCCCGA 3043164 36 100.0 37 GGCTCCCCGA .................................... CGGACTTGATCGACGCGAACCTGTCTGACGCGAACCT 3043237 36 100.0 37 ACGCGAACCT .................................... GGCTGGAAAAGGGCGCGGGGCAACCGCATCGTCAAGA 3043310 36 100.0 36 ATCGTCAAGA .................................... GCGTTGTGGTCGTGTCGTGGAGCCTGTATTTCGCTG 3043382 36 100.0 36 TATTTCGCTG .................................... CATTAGTTGGTGTTGTGATCGCTAAACGCCGGGGCA 3043454 36 100.0 38 CGCCGGGGCA .................................... CTATCCGCGGGAAGAGATCACGAATCCGGCGTCGAAGG 3043528 36 100.0 38 GCGTCGAAGG .................................... ATGCTGAGCTGAGGCGCCGGATGATGGTGGTGCTGAAG 3043602 36 100.0 GGTGCTGAAG .................................... TGACAGGGTGCGGTGGTCGCTGATCGGCTCCCCGA ========== ====== ====== ====== ========== ==================================== 19 36 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [38.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [150,99] Score: 0/0.18 # # Final direction: R [0.27,0.74 Confidence: MEDIUM] >NC_020245 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3045031 36 100.0 40 NNNNNNNNNN CA.G...GGG.GGT..A................... TCGCGGCGAGCACGTCTCACCCAGCAGGCGGTGAGGTTGG 3045107 36 100.0 39 NNNNNNNNNN .................................... ACGGACGAGCTGGACCGCATCAGCGATGCTGAGCTGAGG 3045182 36 100.0 37 NNNNNNNNNN .................................... TTGTCTCAATCGTGCCGTCTGCGGTGACACGCTCCAA 3045255 36 100.0 40 NNNNNNNNNN .................................... TCGACGATTGGGACATCGACATCGACGCGATCGTCGACGA 3045331 36 100.0 41 NNNNNNNNNN ..........T......................... GTGATCTTCTCTCCTGGCGAGGTCAAGGAAATCGATGTGGA 3045408 36 100.0 36 NNNNNNNNNN .................................... CACCAGGATCAGCGCCAAGCCAGTTAGCGCAATCCA 3045480 36 100.0 36 NNNNNNNNNN .................................... CTCCCGGACCATCTGCAGCTCGCCCGGGTCCATGCG 3045552 36 100.0 37 NNNNNNNNNN .................................... CGGAGTCATCCGCGCGGGCCGGCGCGATTGTTGCCGG 3045625 36 100.0 25 NNNNNNNNNN ................................TCCG CGAAATTCACTGCGCGTTATTCAAG 3045686 36 100.0 41 NNNNNNNNNN .................................... CCGAGCCGACCATCCGCATCACACCGAAAGGGTTGGCGCAA 3045763 36 100.0 36 NNNNNNNNNN .................................... ACGTGGGGAGAGGGAATGGCAATGATGGTCGACGAA 3045835 36 100.0 40 NNNNNNNNNN .................................... CTCGGACAGCATCTCCCCGGGCGGGCAGCAGATATCCCAT 3045911 36 100.0 41 NNNNNNNNNN .................................... CGACCCGTGGCCGCCAGGTTGCCGCCGCCGTTGCTCACCTG 3045988 36 100.0 37 NNNNNNNNNN .................................... CCGGAAGTCAACTAGAGCGGGTGTCGAACGCTGCCCG 3046061 36 100.0 37 NNNNNNNNNN .................................... CTAGGCGGCCCCGGCGAGGCTGGGGGCGGTTTCACGC 3046134 36 100.0 40 NNNNNNNNNN .................................... GCGGAGCTGCGGCGCCGGATGATGGCGTTGCTCAAGAGCA 3046210 36 100.0 39 NNNNNNNNNN .................................... TCAAAAACGGGGACGGCATGCTGCATGCCCTAACGTCGT 3046285 36 100.0 38 NNNNNNNNNN .................................... CAGCGCAGACGGCAGCCCCGAGTACTCGCTCTCCTCAG 3046359 36 100.0 37 NNNNNNNNNN .................................... AGGCTGAAATTGAAGCCGGAAATGACGACGCATTGGT 3046432 36 100.0 35 NNNNNNNNNN .................................... CTAAGCCCGCTAATCCCGCACAAGTGGTCAGAAAA 3046503 36 100.0 39 NNNNNNNNNN .................................... CTGATGATTGGTCGGCGTATGACGTGCTACTGAGGTGTT 3046578 36 100.0 38 NNNNNNNNNN .................................... ACCCCTGAGCCACGGCATGTGCACGGCTCCGTGTTCAA 3046652 36 100.0 39 NNNNNNNNNN .................................... TCGATGAATGATGCGCGCCAGCGGTAACGCGTGGGATGT 3046727 36 100.0 36 NNNNNNNNNN .................................... TCTGAAAATTCGTGGTCAACGAATTGTCGTCGAAAT 3046799 36 100.0 35 NNNNNNNNNN .................................... ACGGGCCGTGGGGCACTTACGGCGACGGCGCACAT 3046870 36 100.0 37 NNNNNNNNNN .................................... CCCCTAGCCACGCCTGCCGTGCCATGCCGCGCCGCGA 3046943 36 100.0 36 NNNNNNNNNN .................................... TTGGTCAAAAGCTGTCGCCCAAGCATGAGGCAAAAA 3047015 36 100.0 41 NNNNNNNNNN .................................... ACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTATG 3047092 36 100.0 38 NNNNNNNNNN .................................... GTGCAAGAATTCCGGGTTGCAGTGCAACACGGTTTTAA 3047166 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 30 36 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [36,50] Score: 0/0.18 # # Final direction: R [0,1.42 Confidence: HIGH] >NC_020245 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3045107 36 100.0 39 GTGAGGTTGG .................................... ACGGACGAGCTGGACCGCATCAGCGATGCTGAGCTGAGG 3045182 36 100.0 37 TGAGCTGAGG .................................... TTGTCTCAATCGTGCCGTCTGCGGTGACACGCTCCAA 3045255 36 100.0 40 CACGCTCCAA .................................... TCGACGATTGGGACATCGACATCGACGCGATCGTCGACGA 3045331 36 97.2 41 TCGTCGACGA ..........T......................... GTGATCTTCTCTCCTGGCGAGGTCAAGGAAATCGATGTGGA 3045408 36 100.0 36 TCGATGTGGA .................................... CACCAGGATCAGCGCCAAGCCAGTTAGCGCAATCCA 3045480 36 100.0 36 GCGCAATCCA .................................... CTCCCGGACCATCTGCAGCTCGCCCGGGTCCATGCG 3045552 36 100.0 37 GGTCCATGCG .................................... CGGAGTCATCCGCGCGGGCCGGCGCGATTGTTGCCGG 3045625 36 88.9 29 TTGTTGCCGG ................................---- TCCGCGAAATTCACTGCGCGTTATTCAAG 3045690 36 100.0 41 GTTATTCAAG .................................... CCGAGCCGACCATCCGCATCACACCGAAAGGGTTGGCGCAA 3045767 36 100.0 36 GTTGGCGCAA .................................... ACGTGGGGAGAGGGAATGGCAATGATGGTCGACGAA 3045839 36 100.0 40 GGTCGACGAA .................................... CTCGGACAGCATCTCCCCGGGCGGGCAGCAGATATCCCAT 3045915 36 100.0 41 GATATCCCAT .................................... CGACCCGTGGCCGCCAGGTTGCCGCCGCCGTTGCTCACCTG 3045992 36 100.0 37 TGCTCACCTG .................................... CCGGAAGTCAACTAGAGCGGGTGTCGAACGCTGCCCG 3046065 36 100.0 37 ACGCTGCCCG .................................... CTAGGCGGCCCCGGCGAGGCTGGGGGCGGTTTCACGC 3046138 36 100.0 40 GGTTTCACGC .................................... GCGGAGCTGCGGCGCCGGATGATGGCGTTGCTCAAGAGCA 3046214 36 100.0 39 CTCAAGAGCA .................................... TCAAAAACGGGGACGGCATGCTGCATGCCCTAACGTCGT 3046289 36 100.0 38 CTAACGTCGT .................................... CAGCGCAGACGGCAGCCCCGAGTACTCGCTCTCCTCAG 3046363 36 100.0 37 CTCTCCTCAG .................................... AGGCTGAAATTGAAGCCGGAAATGACGACGCATTGGT 3046436 36 100.0 35 ACGCATTGGT .................................... CTAAGCCCGCTAATCCCGCACAAGTGGTCAGAAAA 3046507 36 100.0 39 GGTCAGAAAA .................................... CTGATGATTGGTCGGCGTATGACGTGCTACTGAGGTGTT 3046582 36 100.0 38 CTGAGGTGTT .................................... ACCCCTGAGCCACGGCATGTGCACGGCTCCGTGTTCAA 3046656 36 100.0 39 CCGTGTTCAA .................................... TCGATGAATGATGCGCGCCAGCGGTAACGCGTGGGATGT 3046731 36 100.0 36 CGTGGGATGT .................................... TCTGAAAATTCGTGGTCAACGAATTGTCGTCGAAAT 3046803 36 100.0 35 TCGTCGAAAT .................................... ACGGGCCGTGGGGCACTTACGGCGACGGCGCACAT 3046874 36 100.0 37 CGGCGCACAT .................................... CCCCTAGCCACGCCTGCCGTGCCATGCCGCGCCGCGA 3046947 36 100.0 36 CGCGCCGCGA .................................... TTGGTCAAAAGCTGTCGCCCAAGCATGAGGCAAAAA 3047019 36 100.0 41 GAGGCAAAAA .................................... ACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTATG 3047096 36 100.0 38 ACCCTCTATG .................................... GTGCAAGAATTCCGGGTTGCAGTGCAACACGGTTTTAA 3047170 36 100.0 ACGGTTTTAA .................................... TCTATGGACA ========== ====== ====== ====== ========== ==================================== 29 36 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [35.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [112,46] Score: 0.18/0.18 # # Final direction: R [0.18,1.42 Confidence: HIGH] >NC_020246 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 1650673 24 100.0 36 NNNNNNNNNN ........................ ATCATTGGAATTGGGCTAGCCCTATTTTTCTTGATA 1650733 24 100.0 35 NNNNNNNNNN ........................ AGTTGGTAGTGGGCAGATATCTAGCCCTGACCACT 1650792 24 100.0 36 NNNNNNNNNN ........................ TGATGTCGAATACCGGAGTCAAGATGTTGATGAAAA 1650852 24 100.0 37 NNNNNNNNNN ........................ AAATAACGAAGATTTAAGTGGTTTTGAACCAAGAGAA 1650913 24 100.0 37 NNNNNNNNNN ........................ TGATCACATGTTTTATCGGTAGTACATAATGTAGAAA 1650974 24 100.0 35 NNNNNNNNNN ........................ GAGGAGTTTGATAAACTTTTGGAATTTCTTGAGAG 1651033 24 100.0 34 NNNNNNNNNN ........................ GAAATATAGCAAGAGTTCTGTGGTCGCTATATTA 1651091 24 100.0 37 NNNNNNNNNN ........................ ATCATTAGCACGATATTTCATCATCACTGCAGTAATC 1651152 24 100.0 35 NNNNNNNNNN ........................ CTCAAAAATATAATGCGTAAGCTTAAATACCCAAC 1651211 24 100.0 36 NNNNNNNNNN ........................ TTTTTATTCTATATTTGAATAAAGCATAAAGTAATC 1651271 24 100.0 35 NNNNNNNNNN ........................ CTAATATTAATGGCAGTAGAAGTCTCGAACAACAC 1651330 24 100.0 35 NNNNNNNNNN ........................ TATCTCGCAATAAATGAGAGAGAGTCGGCGAGTGT 1651389 24 100.0 37 NNNNNNNNNN ........................ TATGTTTGTTGTATTGCTAGCGTAATATTGTATTACA 1651450 24 100.0 36 NNNNNNNNNN ........................ ACACAATATCTTAGTCATTACTGGAATGACTACAAC 1651510 24 100.0 37 NNNNNNNNNN ........................ ATCATTAGCACGATATTTCATCATCACTGCAGTAATC 1651571 24 100.0 35 NNNNNNNNNN ........................ TGTAGTAAATTGATATAATCGGATTGAAGAGAGTG 1651630 24 100.0 34 NNNNNNNNNN ........................ AGGGATATCTGGAAGTAATACACCAGTACTATAC 1651688 24 100.0 37 NNNNNNNNNN ........................ GCCATTCAACTCAAAACTTATAGAAGATTACGAAATA 1651749 24 100.0 37 NNNNNNNNNN ........................ CCAAATGCTAAAAATAGAAAAGGTAGGAGAGTTATTA 1651810 24 100.0 37 NNNNNNNNNN ........................ CGGTCTTCCAAAATTACTTAATGCTCTTGATAATAAA 1651871 24 100.0 37 NNNNNNNNNN ......................G. TAAGGCTAATTTTGATCGATAAAGATGAAGAAGAAAG 1651932 24 100.0 38 NNNNNNNNNN ........................ TATCTAACCCTCTCTTTTTCAACTCTTTGAAGATAAAA 1651994 24 100.0 37 NNNNNNNNNN ........................ CCTCCCTGATATTCACCTTCTCCATTTCCTGTAGCAA 1652055 24 100.0 36 NNNNNNNNNN ........................ ACCAACTCTCAATTACTCATAATATTCAAACTAAAT 1652115 24 100.0 35 NNNNNNNNNN ........................ ATTCCGACTTGCTTAAATTCAGCTTTTTTGTACAA 1652174 24 100.0 35 NNNNNNNNNN ........................ ACAGTAGTAGCTCCGGCTGTCATTCCTAATAATAT 1652233 24 100.0 34 NNNNNNNNNN ........................ AAATGATATAAAAAATGAACAACAGAATATAAAA 1652291 24 100.0 38 NNNNNNNNNN ........................ AACAAGAATTGATGAAGTATTCAAAAGAGCGATATGAA 1652353 24 100.0 39 NNNNNNNNNN ........................ CTTTCAGAGGGCGAGATCGCAGAGTACTTGAGAATAGCG 1652416 24 100.0 35 NNNNNNNNNN ........................ ATTTCTGCAAATGTATAATACATCAATTTTATAAT 1652475 24 100.0 35 NNNNNNNNNN ........................ GCATCAGCAATTATGGAAGTCGCTAGATATTACTA 1652534 24 100.0 39 NNNNNNNNNN ........................ AGGAATGTGTACAACAGCTATAAAAAAAGAAAGAATTGT 1652597 24 100.0 36 NNNNNNNNNN ........................ TTTGGAATATCTTGCGAGGCGAGGGTGAGTGAACCT 1652657 24 100.0 35 NNNNNNNNNN ........................ AATAAAAGGAGATTTCATAGACTCTATTCTCAAAA 1652716 24 100.0 36 NNNNNNNNNN ........................ TTGTTCTAGAAGTGGCGCATTAAACGGCAGTTTTTG 1652776 24 100.0 37 NNNNNNNNNN ........................ GAGAGACAAAATTTCCAAGTAAGTGACTCTGAAAATT 1652837 24 100.0 37 NNNNNNNNNN ........................ AATATACGCTGCATAATATACGCTCTCTTACGCTAAG 1652898 24 100.0 38 NNNNNNNNNN ........................ AGAGTGGCATACCTTATTTGTTTTGTTGAGTTATGAAG 1652960 24 100.0 35 NNNNNNNNNN ........................ TTCCATTTTCTTCATAAGTAGCATCTCTCAACAAT 1653019 24 100.0 33 NNNNNNNNNN ........................ ATAACAATTGTCGGTAACTTATTTAGACGCTTA 1653076 24 100.0 37 NNNNNNNNNN ........................ TTTGATACGATTACAATAAAGTTCACTTAAAGTAGAC 1653137 24 100.0 34 NNNNNNNNNN ........................ AAAGTCTATTTTTATTTTATCTTTATCTATCAGC 1653195 24 100.0 37 NNNNNNNNNN ........................ ATTGGATAGTCAGTACCAAAAGGTACATTAAGCCACT 1653256 24 100.0 36 NNNNNNNNNN ........................ ATCATTAATAGAATACGAAAAGCTAAAAGCAAAAAA 1653316 24 100.0 37 NNNNNNNNNN ........................ ATGTAGATAACATCACTATATTGATAAAGAGACTCGT 1653377 24 100.0 34 NNNNNNNNNN ........................ AAAATCATTGAACTATAATGTAGATCTTGCAGTA 1653435 24 100.0 35 NNNNNNNNNN ........................ TTTCCAGCCCAGCCTCTTTGCAGCTTCTAGCCTAT 1653494 24 100.0 36 NNNNNNNNNN ........................ ATCTAGTGAGACAAAAAGAACCTCAGTCTCAGAGTT 1653554 24 100.0 37 NNNNNNNNNN ........................ TTCCTTATACACATCAAGTAACACAGGCGAGTTCATC 1653615 24 100.0 36 NNNNNNNNNN ........................ TGCGGGATACTACTTCGCCCCAAGTTCTGTAAAGAC 1653675 24 100.0 34 NNNNNNNNNN ........................ TGGTGAACTGGTACAGATACATCCTTATGAAGAA 1653733 24 100.0 37 NNNNNNNNNN ........................ CCATTACTGGACAAAGACTATGTCATCACAGCTGGTG 1653794 24 100.0 36 NNNNNNNNNN ........................ TTAACACTGGTTGAATTCGCAAGGAAAGTGATAGGT 1653854 24 100.0 37 NNNNNNNNNN ........................ AGATATTTAGCGTTAAAACTGCAGGAGACAGGGGCAC 1653915 24 100.0 34 NNNNNNNNNN ........................ AAGTTTTTGATATCTGTCCCTGCAGTGTCTAGTG 1653973 24 100.0 40 NNNNNNNNNN ........................ CTTCATACTCATACCAATTGTAAGTGTTTCCTTGTGTTGA 1654037 24 100.0 35 NNNNNNNNNN ........................ TCTTGGAAAGACCTTAAAAAAAGGATTGATTTATT 1654096 24 100.0 35 NNNNNNNNNN ........................ TCGCATGCCTTAAATCGATCGTTTTCTCTACATCT 1654155 24 100.0 38 NNNNNNNNNN ........................ TACGCTCCATGCCCAGCTGTGCTCTCATCAACACATAG 1654217 24 100.0 35 NNNNNNNNNN ........................ GCGAGAAAGACTTCTACTGGGGCGCCGAATTTAAC 1654276 24 100.0 36 NNNNNNNNNN ........................ ATCGCTGAGATCCTAGCGACTTTCTACCTGCCCGAT 1654336 24 100.0 34 NNNNNNNNNN ........................ CGCTAAAGAACGCCCTAAGGGAAGCCTTCAAATA 1654394 24 100.0 35 NNNNNNNNNN ........................ TATCGCCTCACGCCATCTCTTTGGCGTGGTATAAT 1654453 24 100.0 38 NNNNNNNNNN ........................ AAGTCGCAAAAGAACTGCTAGACAAATTTGACAGTGAA 1654515 24 100.0 38 NNNNNNNNNN ........................ TGACTTATTTTTTGTCTTAACTTCACTACTCATTTTCT 1654577 24 100.0 36 NNNNNNNNNN ........................ AAAGAACTCATTATCTTTAAGGACAAAGTCAGGGGT 1654637 24 100.0 36 NNNNNNNNNN ........................ TTCCCCTGCGGATACTTCTGCCTCAATTTGGTCACA 1654697 24 100.0 35 NNNNNNNNNN ........................ AAACCTTTTCAGAGGCTTACCTCATCAATGTGGAA 1654756 24 100.0 34 NNNNNNNNNN ........................ AAAGAAAAAGAAAAGGCGGGGGCGAGGGCATGGA 1654814 24 100.0 35 NNNNNNNNNN ........................ TCTGTGTAACGTATCAGCAATGCGCTTTGTTATAT 1654873 24 100.0 34 NNNNNNNNNN ........................ GCGGATTTCCACTGTTTCCAGCCTGAGCTTGGGC 1654931 24 100.0 36 NNNNNNNNNN ........................ AGCAAATTTTTAACAAATGTATTCCATTCTTGAAGT 1654991 24 100.0 36 NNNNNNNNNN ........................ AATTTTATAATGTCTGTAAAACTAAAACATTGTTTT 1655051 24 100.0 41 NNNNNNNNNN ........................ AAGGGATCTAGCCTGGCTAGAGAGCTTGCCGCTTTAATTAA 1655116 24 100.0 36 NNNNNNNNNN ........................ ATGGGTGCACCACCAGAAGTAGTAGAAGAGGTCGAG 1655176 24 100.0 36 NNNNNNNNNN ........................ TGTATTGCCCACAATGTCCCGTTTTCGTTGTACAGG 1655236 24 100.0 35 NNNNNNNNNN ........................ CAAGAGAAAGGAGCTAGGAAGAGGATCTTTTCCCT 1655295 24 100.0 36 NNNNNNNNNN ........................ ATTAGGACTCGAAAAATTTATATAAAAAAAGACATT 1655355 24 100.0 37 NNNNNNNNNN ........................ TTCTCATCAACATTTGCTGTACAAATTTCATAATCAT 1655416 24 100.0 37 NNNNNNNNNN ........................ ACCAGTCTTACTCAACAAGTCAGCCCTTACTTATAAT 1655477 24 100.0 35 NNNNNNNNNN ........................ CTCAGTCAGATACGTCTTCTTTAGCTGGCTTATGT 1655536 24 100.0 35 NNNNNNNNNN ........................ ATCGAGTGGAAGGCGTTAGACCCAGTAGCTGCCGC 1655595 24 100.0 34 NNNNNNNNNN ........................ AGCCTGGATCTGAAGAAACATAACCATGAGATAT 1655653 24 100.0 34 NNNNNNNNNN ........................ AGGTCAGGAATATAGATTATTCGTACTTTGCTAT 1655711 24 100.0 34 NNNNNNNNNN ........................ AAGTCTTCAGAAAATCATCAACACGCATATACTG 1655769 24 100.0 34 NNNNNNNNNN ........................ TTTGATTAAAATGGGTTGGTATGGCATAAAAAAT 1655827 24 100.0 40 NNNNNNNNNN ........................ ATCGGAATTATAGGCGGATTTTTAACAATATTCCTAACAT 1655891 24 100.0 33 NNNNNNNNNN ........................ GGAGACAAAGTTTGTCTGTGCAATATATCCCAA 1655948 24 100.0 34 NNNNNNNNNN ........................ AGAAAGAGGAACATAAGGTCTAGATCTTACCCAA 1656006 24 100.0 35 NNNNNNNNNN ........................ TAATTCATCTTTATAGTGTAACTTTTTGAAATAAA 1656065 24 100.0 39 NNNNNNNNNN ........................ AACTAAGAAAAATTCAGTCAGCAGTATTAACTACTACTA 1656128 24 100.0 36 NNNNNNNNNN ........................ TACACCAGTGAGAATGTCTTCCCGAAACTACAAGAA 1656188 24 100.0 35 NNNNNNNNNN ........................ AATTGGCAACTAAGAAGTTTGTACAAATAACATAA 1656247 24 100.0 35 NNNNNNNNNN ........................ GAATAGGGGATGCGATAAACCAGTTAGCACAACAA 1656306 24 100.0 35 NNNNNNNNNN ........................ GGCATATAGAATTTTTCGCTTTGTTGCCTCTTTAA 1656365 24 100.0 35 NNNNNNNNNN ........................ ATTCAATTTTTTTCGTTTTGTCGGTGAAAATAAAA 1656424 24 100.0 34 NNNNNNNNNN ........................ GCTTGTGGTAACTATTCCATCGTCATCAGCAATC 1656482 24 100.0 37 NNNNNNNNNN ........................ AACGCATTATTGCTAATGCACGGTGCTAACAATCTAG 1656543 24 100.0 35 NNNNNNNNNN ........................ GTTTAAAACGGTAAATAGATAAAACCAAGAAAATG 1656602 24 100.0 35 NNNNNNNNNN ........................ ACGTCTTGTGCTGACTTGTAAACATCGCTGTTCTT 1656661 24 100.0 34 NNNNNNNNNN ........................ AAAGAAGTGCAAAAAAATGGCTACGGTGTACATT 1656719 24 100.0 34 NNNNNNNNNN ........................ ATGCATTCATTAAAGACTTAACAATTCAAGAGTT 1656777 24 100.0 34 NNNNNNNNNN ........................ AAGTTTCTTAATTTATTACAGTTATATGAACAGC 1656835 24 100.0 36 NNNNNNNNNN ........................ ACAATAGCCCGCAAATGTCAGTATCATCACGTTGTT 1656895 24 100.0 36 NNNNNNNNNN ........................ AGATTTTATGAAACATTAACTATTTATTTTATCTAT 1656955 24 100.0 36 NNNNNNNNNN ........................ ATTAATCAGATAGAAACTAGCAGTGTTTTTTATGTT 1657015 24 100.0 36 NNNNNNNNNN ........................ ACCTTCACTTATTGAAGATGGGGCTGAAACAACTTT 1657075 24 100.0 35 NNNNNNNNNN ........................ TTGGTTACTGATATTTTCTGAACTCCAGCAAATGT 1657134 24 100.0 35 NNNNNNNNNN ........................ CGTTAAACAGACTAGGCTCAGGACAAGCATTCACT 1657193 24 100.0 35 NNNNNNNNNN ........................ AGCCCAAATCTGTTATCTCTTTAGAATGAAATTTT 1657252 24 100.0 36 NNNNNNNNNN ........................ AGAGTACCTTTACCTAACCAGAGCGTCGTATATTAT 1657312 24 100.0 35 NNNNNNNNNN ........................ TGTAGTCTTGCGCAATACCTGCGCTCTTTAGCAGT 1657371 24 100.0 34 NNNNNNNNNN ........................ AGAAGCTATACAACGAGGCTATATAAATAAAATG 1657429 24 100.0 35 NNNNNNNNNN ........................ GTGAAGATGTCGATAGTGACGATAGCTGAGATAGT 1657488 24 100.0 38 NNNNNNNNNN ........................ AAAGTAAGCCCGATAGTCCTTAGGTCAGGATCCCTTTA 1657550 24 100.0 34 NNNNNNNNNN ........................ TATATTTGGTCAAGTGTTTCTACAGCATTTTAAT 1657608 24 100.0 35 NNNNNNNNNN ........................ GCAGAGTCTTTCGCTACGTCTTTCAGCGTCTCAAA 1657667 24 100.0 37 NNNNNNNNNN ........................ GATCACAGTAATGCGTTATATAAAAAGGCAGAATTCA 1657728 24 100.0 37 NNNNNNNNNN ........................ CTTTGATCAATTACTAAATTCTGTAATTGTGCCTCTA 1657789 24 100.0 36 NNNNNNNNNN ........................ GTAGAAAGTCATAACCCAAAACTTCATTTTTTTGTT 1657849 24 100.0 35 NNNNNNNNNN ........................ ACAGGCTGTACCAAGCTGTTAGCGATGTAGTTAAT 1657908 24 100.0 35 NNNNNNNNNN ........................ AGCTCCCATTAAAATCACGACCACTCCAAATATCA 1657967 24 100.0 36 NNNNNNNNNN ........................ AGTTATAATCTATCTCCGGAACATTAAAATATTTTA 1658027 24 100.0 35 NNNNNNNNNN ........................ ATAGTTGGTGGGACGGAATGGAGAAACAGCTAAAA 1658086 24 100.0 39 NNNNNNNNNN ........................ TATAAAAAAGCATTTGCACAGTCTTGGAAACCACTATTT 1658149 24 100.0 36 NNNNNNNNNN ........................ ATGCTCGCCCACCAGCACACCGGACAGATCGACATA 1658209 24 100.0 42 NNNNNNNNNN ........................ AACTGAAGGAACCTTGTAGAGCGGTATGCTTTGCTTCTTCTC 1658275 24 100.0 37 NNNNNNNNNN ........................ AACTGGAGCAACGTATTGTTGAATATAGCCCCTATGA 1658336 24 100.0 34 NNNNNNNNNN ........................ AATGAGATATTCACTGAGGTCATGGAGCGTGAAA 1658394 24 100.0 39 NNNNNNNNNN ........................ TTTCCTTATTTTTTAACGAGGGAAATGGTCAGGCTAAAA 1658457 24 100.0 32 NNNNNNNNNN ........................ TACGGTAAACTGGGGAGTTAACTCAGCATCCA 1658513 24 100.0 38 NNNNNNNNNN ........................ CTTTCGCATACTTCCTCGCCCTCCTTGAGATATTTTCT 1658575 24 100.0 1 NNNNNNNNNN ........................ NNNNNNNNNN ========== ====== ====== ====== ========== ======================== 133 24 35 GTTTTAGTTTCTTGTCGTTATTAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.83%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [131,1085] Score: 0.18/0.18 # # Final direction: R [0,0.59 Confidence: HIGH] >NC_020246 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 1670966 24 100.0 36 CCAACGATCA ........................ ATCTTCTCTGTCCTCTACTACTTTCTGCTCTTCTTT 1671026 24 100.0 36 GCTCTTCTTT ........................ TGAAAAGTTCATAAAAAAGTACCCTAACGTAGAACA 1671086 24 100.0 34 ACGTAGAACA ........................ AATTTTATGATATCGCTTTTGTTCAAGGAAACAT 1671144 24 100.0 39 AAGGAAACAT ........................ AATTCTAAGTGCACAAGAAGGACTAGAAGAGGCAGGCCT 1671207 24 100.0 34 AGGCAGGCCT ........................ TAATGCCCAGTAACATAGATGCCTCCTTGATTAT 1671265 24 100.0 35 CCTTGATTAT ........................ AATTTGGATTGACGTCACCTCAAGATCTATTACCT 1671324 24 100.0 36 TCTATTACCT ........................ ATATTTAAGCCTTACTCTTTACATTAAAAGTAACAA 1671384 24 100.0 35 AAAGTAACAA ........................ TCGACGTTAGTCTTAGATTTTTATCATTTTTAGGT 1671443 24 100.0 34 ATTTTTAGGT ........................ TTGTGCTCTTTAATGTCAAACAGTGTGATCTATT 1671501 24 100.0 35 GTGATCTATT ........................ ACAGTGCATGAAGTAGCATCATATGTCGTAAGTGA 1671560 24 100.0 36 TCGTAAGTGA ........................ TCTCTGGGTTAAGTGCAAAGAGCACTGGGATTACAA 1671620 24 100.0 34 GGGATTACAA ........................ CAACAAGGCTGAGAAGATAGCAAAGAAGCTAGTA 1671678 24 100.0 38 GAAGCTAGTA ........................ TACAATAATTTCAGATTTCCAGTAAATGATACAAATTC 1671740 24 100.0 36 ATACAAATTC ........................ TTGTCATTAAACTGACAACTTTGTCTCTGACCCAAA 1671800 24 100.0 34 CTGACCCAAA ........................ AGTAGCGGTATACAAAAATGTATTTGTTGTGATA 1671858 24 100.0 34 TGTTGTGATA ........................ TGGCTCACAGGCATTAATACCTGCAAAGCCTAGG 1671916 24 100.0 39 AAAGCCTAGG ........................ AAAAGTTTGCCAATTTAGGTGCTGTGCAGGAAGCATTTA 1671979 24 100.0 34 GAAGCATTTA ........................ GAATAATTGTAGATCAGCCATCAACTTCCACACG 1672037 24 100.0 36 CTTCCACACG ........................ AGAAAATGAGTAGTGAGATAAAGACAAAAAATAAGT 1672097 24 100.0 39 AAAAATAAGT ........................ AATTTCTATATAATCCAAGAGACACAGAGAGGTTTCTAC 1672160 24 100.0 37 AGGTTTCTAC ........................ TACATTACTTTTAGAAATATAGTATGAGCGTAACATA 1672221 24 100.0 33 GCGTAACATA ........................ CAGTACACAAAGTGGATAGGAAAAGTCAACAAT 1672278 24 100.0 36 AGTCAACAAT ........................ ATCGTATATTATATTGGGGCAGAAAAAATGAATGAT 1672338 24 100.0 34 AATGAATGAT ........................ CAGGTTCAATTTCAGTAAATAATGGCATTACAAT 1672396 24 100.0 38 GCATTACAAT ........................ AACATCAGACTTTTGCACTTTTATTAGAAGGCTTTGGA 1672458 24 100.0 34 AGGCTTTGGA ........................ GATACATTGCATATATTGGCAATCAGCAATACAA 1672516 24 100.0 36 AGCAATACAA ........................ ACTATATATTGTTTGGAGCTTATCATAAACTTCATC 1672576 24 100.0 34 AAACTTCATC ........................ CTGAATAGAGAGATGATAGAAGAAACGGTAAGTA 1672634 24 100.0 39 ACGGTAAGTA ........................ TCAGCCTCTAATTCTGCTGCAACTTCCATCAATTTCCTT 1672697 24 100.0 39 CAATTTCCTT ........................ ATTAATTCCAAAGGACATTGAGAAGAAATTTGGCTTAAA 1672760 24 100.0 37 TTGGCTTAAA ........................ ATATGAGCAACAGCAACTCAAATCTTTATATGAAGTC 1672821 24 100.0 34 ATATGAAGTC ........................ CACCAAAGAGTTTTTGTCCAAAGCCTTTTATGGA 1672879 24 100.0 37 CTTTTATGGA ........................ CAGTCTCAATGTCTTTATGAGACAATTCTATATCCAA 1672940 24 100.0 36 CTATATCCAA ........................ GCACTTCTACTTGCTTAACGCTATAGCAAGCAAGAA 1673000 24 100.0 38 CAAGCAAGAA ........................ GTTCATCAACCTCATGCTGAGTAAGACTATTAGTATGT 1673062 24 100.0 36 ATTAGTATGT ........................ CTCGTATTCGTAAAAGCCCTCGTGGGTGGTGACGAT 1673122 24 95.8 35 TGGTGACGAT .......................A CTTTACAACTAATTTTTTCAGGAAAACAAATTGAA 1673181 24 100.0 34 ACAAATTGAA ........................ TATGTCTTAGATAGTTGAAAAAGCTAAAGCTTTT 1673239 24 100.0 36 TAAAGCTTTT ........................ GAATGTGTCCCCCTAGAGGTTTTCACCAAACAACCA 1673299 24 100.0 36 CAAACAACCA ........................ AAAAAACCTTTAACCTCTATCGAATGCTGTCAAAAA 1673359 24 100.0 35 CTGTCAAAAA ........................ AACGTTACGACCACTACTACTCAGAAGAAGATAGT 1673418 24 100.0 37 AGAAGATAGT ........................ GAGGGATGAAGGCAAATCAGTATCAGCAATAGTAGAG 1673479 24 100.0 35 AATAGTAGAG ........................ GAAGTAGAACAGCTGTTTTTCAGGATTGAAATTAT 1673538 24 100.0 39 TTGAAATTAT ........................ AAGAGAATACTTTCTCGCCTCAGCAAGAATCGTATCAAT 1673601 24 100.0 35 TCGTATCAAT ........................ GTATGTGGGAGAGCTTTATGAGTGGTAAGACACAC 1673660 24 100.0 33 TAAGACACAC ........................ ATGCAGGTACTATACTGAGCCTGATGAACAGCA 1673717 24 100.0 34 ATGAACAGCA ........................ AAATTTAAGGAAAATGGAGTGTATGTATATAAAT 1673775 24 100.0 35 GTATATAAAT ........................ CTCAATTATTTTCAATGCTTTTTCTTTTTCGTTGT 1673834 24 100.0 36 TTTTCGTTGT ........................ ACATCAGCACTTATGGATACTACGCCATGCTCATCT 1673894 24 100.0 35 ATGCTCATCT ........................ ACTATTACTTTTGAAAATATGTAGATAAGACTGGT 1673953 24 100.0 34 TAAGACTGGT ........................ TTACAGTTGTTCCGTTAGGAAGTATATAGTTACT 1674011 24 100.0 37 TATAGTTACT ........................ AAAATAATCATAAAACCCGAGCATTACGAAGAATTGA 1674072 24 95.8 37 GAAGAATTGA .......T................ TGTAAAGGACTTCTTAAAAAGGTTAGAGGGGTTTCTC 1674133 24 95.8 35 GGGGTTTCTC .......T................ GTAATTATTCTGATGGGTGCTATAATCTCGATGGC 1674192 24 100.0 35 TCTCGATGGC ........................ AGCGATTAGTTTAGTCGAATTAGCTATTGCGACTT 1674251 24 95.8 34 ATTGCGACTT ...........G............ ATGGGATCCTGATAATTCGGCATCAGCACAATTC 1674309 24 100.0 35 AGCACAATTC ........................ CTCTTCATTTGTCTCGTGAAATATAGGGTTTTTCA 1674368 24 95.8 35 GGGTTTTTCA ...........G............ ATAGGGTAGTTCACAAAGAGCCAGCCCTCGTCAAC 1674427 24 100.0 35 CCTCGTCAAC ........................ CTTTACGTAGTAGTTATAGAGCTTCGTTACGTGCT 1674486 24 100.0 38 GTTACGTGCT ........................ CTTGAACCATTGAACCTGCGATTGCAGGGATTAAGTAT 1674548 24 100.0 36 GATTAAGTAT ........................ GCTGACTGGGGGTGAGCCAGAAATGAAGACTGGAAG 1674608 24 100.0 36 AGACTGGAAG ........................ TAAAATTAGTCTGCTGGCCAATTAAGAACAAACTCT 1674668 24 100.0 35 AACAAACTCT ........................ GTGCAACAGGGTGAAACATAGATGAGCACATTTTT 1674727 24 100.0 35 GCACATTTTT ........................ ATTATGCTCATTATCTCTGATTTCGACCTTAAAGC 1674786 24 100.0 37 ACCTTAAAGC ........................ CTACATTGTCCTGAAGTCCTAACTTCTTTAATTCCTT 1674847 24 100.0 39 TTAATTCCTT ........................ TTTTTATTTTCAGTAGCTATCACCATAGTAGCCCTAAAA 1674910 24 100.0 37 AGCCCTAAAA ........................ TACTCCCCAGGCTTACCCAGCAAGAAGAGGAAGCCTT 1674971 24 100.0 35 AGGAAGCCTT ........................ TAGGAGGAAAATATAGGAATATAAAGATAGTACTA 1675030 24 100.0 35 GATAGTACTA ........................ TAGGAGGAAAATATAGGAATATAAAGATAGTACTA 1675089 24 100.0 35 GATAGTACTA ........................ TAGGAGGAAAATATAGGAATATAAAGATAGTACTA 1675148 24 100.0 35 GATAGTACTA ........................ TAGGAGGAAAATATAGGAATATAAAGATAGTACTA 1675207 24 100.0 35 GATAGTACTA ........................ TAGGAGGAAAATATAGGAATATAAAGATAGTACTA 1675266 24 100.0 36 GATAGTACTA ........................ CATTTTAGCTCAAGCATCACCAGCATCAATTGAAAG 1675326 24 100.0 36 CAATTGAAAG ........................ ACCGTTCCGTAGATATTATTACTGTAACTCCCTCCC 1675386 24 100.0 37 ACTCCCTCCC ........................ ACTGGGCTCCCCGTGATCACTCCAGGTCCTTATGTTG 1675447 24 100.0 36 CCTTATGTTG ........................ GACGCTAAAAAGCAAGAACAACAATCACAACAATCG 1675507 24 100.0 36 ACAACAATCG ........................ TTTCTTAGTGAATCCCATGTACGTATATCTAATTTA 1675567 24 100.0 ATCTAATTTA ........................ ACTGTAACTA ========== ====== ====== ====== ========== ======================== 78 24 35 GTAATAACGACAAGAAACTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.83%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [223,575] Score: 0.18/0.18 # # Final direction: F [0.68,0.18 Confidence: MEDIUM] >NC_020246 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================== ====== 1786206 26 100.0 40 ATATATACTT .......................... CTACCTTTTGAGATGCTTTCACCGATCTATGTTAAAGCAA 1786272 26 100.0 35 GTTAAAGCAA .......................... CTCGTTTTCAATAAATGTCTATAGGGATGAATGTG 1786333 26 100.0 36 GATGAATGTG .......................... GATACGTTGCAGGCAGATGATGAGAGATGATGATAT 1786395 26 96.2 ATGATGATAT G......................... TGATGTATTT ========== ====== ====== ====== ========== ========================== 4 26 37 ACTTTCAATCCCTTATGGGATTCTTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.54%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [688,636] Score: 0/0.18 # # Final direction: R [0.78,4.5 Confidence: HIGH] >NC_020287 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 16310 37 100.0 35 AGGGGGCGGT ..................................... GATTGTTGTGCCCCTGGCGGTCGCTTTCAATGCCT 16382 37 100.0 37 TTCAATGCCT ..................................... TAATCCTAATTAGGTTTGAGTTAGTATCTAGTGCCAT 16456 37 100.0 33 CTAGTGCCAT ..................................... ACAGATTTTGCTTCAGCTAGTACCAAAGGCTAG 16526 37 100.0 37 CAAAGGCTAG ..................................... TCGTAACTACCTTCTAAGTCTGTAGCGATGAATGTGG 16600 37 100.0 37 ATGAATGTGG ..................................... CAAAATATAGGGAAGAATTTTAGAAAGAACCTCAGAA 16674 37 100.0 39 AACCTCAGAA ..................................... AACTAAGGCATCCCATAGCATTCCGCTACGATCTATCAG 16750 37 100.0 35 GATCTATCAG ..................................... TAATAATTGCTGATTAATCGTGGTGGTGGTGGTGG 16822 37 100.0 36 GTGGTGGTGG ..................................... GATATATGGCTAAATATTGCTCAAAAGATTTTAATA 16895 37 100.0 35 GATTTTAATA ..................................... ATTAGATTGGTCGTGTTTTGATTAACGGTGCTAGC 16967 37 100.0 35 CGGTGCTAGC ..................................... TTGCCATCCCAGGCAACATAGCAAGCATGGAGGTG 17039 37 100.0 35 CATGGAGGTG ..................................... TTGCCATCCCAGGCAACATAGCAAGCATGGAGGTG 17111 37 100.0 36 CATGGAGGTG ..................................... TTGCGGACAGACTCGATTAAGTCAATAACAGCTTGG 17184 37 100.0 36 AACAGCTTGG ..................................... CTTGCCCTAATTTTCCTGGTGGAAAAGCCGCTGGCT 17257 37 100.0 35 GCCGCTGGCT ..................................... ATAGCAAGTTGCTAGAGAAAGCGCAACAAAACAAG 17329 37 100.0 32 ACAAAACAAG ..................................... TAGTCCCTCCCACACTGCCAATATTTCTTCAT 17398 37 100.0 31 ATTTCTTCAT ..................................... TCCGTCTGTATGACTTATACTCGCAAGGATT 17466 37 100.0 CGCAAGGATT ..................................... ACGCCGCCAGC ========== ====== ====== ====== ========== ===================================== 17 37 35 CTTTCCTTCTACTAATCCCGGCGATCGGGACTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [8,10] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched CTTTCCTTCTACTAATCCCGGCGATCGGGACTGAAAC with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-7.50,-9.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [214,366] Score: 0/0.18 # # Final direction: R [0.5,0.74 Confidence: LOW] >NC_020287 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 66100 37 100.0 36 NNNNNNNNNN ..................................... TGTAGTAGAACCAATCGGGGTCGTCAATAACTCCCG 66173 37 100.0 40 NNNNNNNNNN ..................................... CGGGGCTTGGGGGGTTGGAGTCCCCGCCCCCGTGGTGGGA 66250 37 100.0 42 NNNNNNNNNN ..................................... TGTGAGTTGCATAATGCCTCCTAATGGCTGTTGGACTCATAA 66329 37 100.0 36 NNNNNNNNNN ..................................... CTTGGTATTTGTAGTTCTCGATGAGTGTTTTAGGCA 66402 37 100.0 36 NNNNNNNNNN ..................................... TGATAACGGGATGCCAGCCCTAAAGGTGATGAGCGG 66475 37 100.0 39 NNNNNNNNNN ..................................... CGTTATCCGGCAAAGAAACCACACTACTAAGCTCGACAA 66551 37 100.0 39 NNNNNNNNNN ..................................... TGGGCCGGGCGCGAGTTGTCCTCCTGTCCGAGGCCCCAC 66627 37 100.0 39 NNNNNNNNNN ..................................... CGTTATCCGGCAAAGAAACCACACTACTAAGCTCGACAA 66703 37 100.0 39 NNNNNNNNNN ..................................... TGGGCCGGGCGCGAGTTGTCCTCCTGTCCGAGGCCCCAC 66779 37 100.0 35 NNNNNNNNNN ..................................... CTATTAAGGCTATTTTCGCCACTTCTGTTTGAAAG 66851 37 100.0 44 NNNNNNNNNN ..................................... GTCACACCTCTTCACGAATCCTCACATCATGAATAAGCTGCACA 66932 37 100.0 39 NNNNNNNNNN ..................................... CGCGGGTCGAGATGTCGCTGGACACGCTGGTGCCGGACA 67008 37 100.0 38 NNNNNNNNNN ..................................... CTGGGCGGACTGGAGTTGCCACCTGCCGATGGCCTGCA 67083 37 100.0 41 NNNNNNNNNN ..................................... GAGCCAAAGTCAACTAGCACAGGCACGGCAAGCCATCCTGA 67161 37 100.0 38 NNNNNNNNNN ..................................... TCGTGCATCTGCGCATAGGAAGAGGTTAATTCCTCAAC 67236 37 100.0 38 NNNNNNNNNN ..................................... AACGGGCAGCCCGAGTGGTGGGCATCGAGGTGGTGCTC 67311 37 100.0 40 NNNNNNNNNN ..................................... CCCCGCCACATTTTCGGATTAGAGGATTTGAATCGGCCGT 67388 37 100.0 42 NNNNNNNNNN ..................................... AGTTTCTCAAACTTTTCGGCGATCGCCGTCCAGGTGAGTTGA 67467 37 100.0 43 NNNNNNNNNN ..................................... TAGCGAAAAGTTATAGTTACCTTTGACCGGAGCTACCAACTCA 67547 37 100.0 35 NNNNNNNNNN ..................................... CCCCGCTGCCACGAGGGCAGCTGTAGACGCACCCC 67619 37 100.0 40 NNNNNNNNNN ..................................... TTAAATATACCCATCCCTAATAAAGGATAGAGATCTTGCA 67696 37 100.0 37 NNNNNNNNNN ..................................... GCTCTATTCTAATAACCCAAGCTTTTTTCAATTCTAA 67770 37 100.0 41 NNNNNNNNNN ..................................... CCGCTTGGTAGGATTGACCACCAAAGCTAGAAACAGGCACA 67848 37 100.0 35 NNNNNNNNNN ..................................... AGGGCGGTTAATCACTAGCGGCGATCTAGATATTG 67920 37 100.0 45 NNNNNNNNNN ..................................... TAGACTTCTATTTCCCCTCTTGCCGAGGGATGATACTGCAATTGA 68002 37 100.0 38 NNNNNNNNNN ..................................... TGCGCTCTCTTATCAAACGCCGCAACGCCATCAAGGCT 68077 37 100.0 39 NNNNNNNNNN ..................................... ACGAGCGGAATCTTCTATGGATCGGATCACATCCTTAAT 68153 37 100.0 37 NNNNNNNNNN ..................................... CTGGTGTCGGGGTTGTAGTATTCGTCTCGGTACAACA 68227 37 100.0 40 NNNNNNNNNN ..................................... ACTATAGGGAGCGTTACCCTAGCTAGACATTGCCTAATCT 68304 37 100.0 40 NNNNNNNNNN ..................................... AAGAAGCAGAATAATGCGATTGAGTGGACAAAAATAAGAA 68381 37 100.0 34 NNNNNNNNNN ..................................... GGTTACGTATCGGCGTAACCGCCACTCCTTAGAG 68452 37 100.0 39 NNNNNNNNNN ..................................... CGCCTCCTGCGCCCTGGAGGGGTGATCCTACACCTCGCG 68528 37 100.0 36 NNNNNNNNNN ..................................... GATTCTGGTATACGTTTATCCCACCACTCCTTAGCT 68601 37 100.0 35 NNNNNNNNNN ..................................... CTCGTAAGCTAGGCAACGGCCTTGCTCGATGCACA 68673 37 100.0 36 NNNNNNNNNN ..................................... GGTGCAGCTGCGCCTAAGGAGATGGCTGTACAAGCT 68746 37 100.0 39 NNNNNNNNNN ..................................... CACCTAGAGGGTACCTCCCGGTTAGACCGGGGCTCTTAT 68822 37 100.0 36 NNNNNNNNNN ..................................... AACATGGCCACAACAACCTTCCCGGAGCAAGGGATG 68895 37 100.0 40 NNNNNNNNNN ..................................... GGCGATATTTGGCGTGCCAGCCAAGTGAATTTTGGCGCTG 68972 37 100.0 36 NNNNNNNNNN ..................................... AACATGGCCACAACAACCTTCCCGGAGCAAGGGATG 69045 37 100.0 30 NNNNNNNNNN ..................................... GGCGATATTTGGCGTGCCGCTCAGCCTTAA 69112 37 100.0 36 NNNNNNNNNN ..................................... TCCTCCTCGCCTCTGAGAAAGAGTATGAAACACTGT 69185 37 100.0 37 NNNNNNNNNN ..................................... ATGAACAGATTGCCATCTTCTAGGCGGATAGCCTGGG 69259 37 100.0 40 NNNNNNNNNN ..................................... CGCCCATTGTTTGTGCTTCCGGAAGAAGTCTTTCAACTTC 69336 37 100.0 43 NNNNNNNNNN ..................................... GTTATCACGAGTTATCTTGCGCAAATCTTGTAGTGCATCTTTT 69416 37 100.0 37 NNNNNNNNNN ..................................... TTTAGCGGAGGAGACCTCTTCTATTTCTCCTATAACC 69490 37 100.0 41 NNNNNNNNNN ..................................... GGGAGAACCCTAAAAAGTTCTCCTGTCTAATCGCCACCTGT 69568 37 100.0 35 NNNNNNNNNN ..................................... CGCTCCAGAGTGCGCCGCCGCCGAATTGCGGTCCA 69640 37 100.0 45 NNNNNNNNNN ..................................... GAGACTCTATCTTTGGAGTTTCTAAGACATTGGCGGTTTCTAGGG 69722 37 100.0 41 NNNNNNNNNN ..................................... ATTGCTTGGCGTAGGTTGACTTACCCGAGCCTGGGAGACCA 69800 37 100.0 40 NNNNNNNNNN ..................................... TCCAAGGGCTCTTCGTCTTCAAAGGCCTTAGTTACCTCTG 69877 37 100.0 45 NNNNNNNNNN ..................................... ATAATAAAGCACCCTCAACGGACTATGCCATGAACAACAGGACCC 69959 37 100.0 34 NNNNNNNNNN ..................................... GTTGCCAGTTTTGCCGTTTTTGCTGTTCTGAGAT 70030 37 100.0 46 NNNNNNNNNN ..................................... CCCATAATAATTAGGCTCGCTACCATAAGGGGAAACTTCTTCCAAG 70113 37 100.0 34 NNNNNNNNNN ..................................... GCGCCTGAGGTGGTCAATAGTGACCCCATGGCTC 70184 37 100.0 1 NNNNNNNNNN .......................T............. NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 55 37 38 GTTCAACACCCTCTTTTCCCCGTCAGGGGACTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [8,9] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTTCAACACCCTCTTTTCCCCGTCAGGGGACTGAAAC with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-9.10,-8.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [53.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [524,101] Score: 0.18/0.18 # # Final direction: F [1.46,0.64 Confidence: MEDIUM] >NC_020246 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 1825806 25 96.0 36 TAATTGCCGT ..........T.............. AGAGTCCCCTTCAACATAAAACCTAACTTGGTTTGG 1825867 25 100.0 38 CTTGGTTTGG ......................... ATTATCGACTCCCTAGACGTTCACATAAGCGACAAGAT 1825930 25 100.0 37 GCGACAAGAT ......................... TAGCTCTAGCAGGAGAAGAGGCTAATGTTAGCAGAGC 1825992 25 100.0 41 TTAGCAGAGC ......................... TGCGGAAATATGGAAAGAAGTATTATGAAAAAAGGAGAAAA 1826058 25 100.0 36 AAGGAGAAAA ......................... TCTCGTATGACTTGCTGTCCAATGACATAATAAACT 1826119 25 100.0 38 ATAATAAACT ......................... CTGTCATTAGCACAGGCTGGCATACTTTATTTATACCC 1826182 25 100.0 37 ATTTATACCC ......................... AAAGTTCTAGTCAGCCAGCACCTGAAAATAGGGTGCT 1826244 25 100.0 39 ATAGGGTGCT ......................... GAGTTTAAAAAGCTTTAAACAGTACGCAAACGATTTGAG 1826308 25 100.0 42 ACGATTTGAG ......................... TATGAACTAACAGATAAAGGGAAGAGAAGTGTTCCCAAAACT 1826375 25 100.0 39 TCCCAAAACT ......................... CTTTAAGATTGAGCTTGACAAATATTTCTGTGAACAGAG 1826439 25 100.0 GTGAACAGAG ......................... TGGTTTGTTT ========== ====== ====== ====== ========== ========================= 11 25 38 CTTTCAATCCCTTTTGGGATTCATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: R [matched GATTAATCCCAAAAGGAATTGAAAG with 92% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-6.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [357,445] Score: 0/0.18 # # Final direction: R [0.37,5.41 Confidence: HIGH] >NC_020287 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 87547 36 100.0 36 NNNNNNNNNN .................................... CTTTAGGTGGGCGTTGACCTTTAGATTAGGAATGGT 87619 36 100.0 36 NNNNNNNNNN .................................... AGCGCCACAGCTGACAGAGTTCCTGAAGGAAGCTAA 87691 36 100.0 35 NNNNNNNNNN .................................... CTGAGTGATTTTTATCAATTGTCGAGCTTAGTAGT 87762 36 100.0 36 NNNNNNNNNN .................................... ACAGGAGTGTTAGCGCACTGCCTGTCATTACTATTA 87834 36 100.0 39 NNNNNNNNNN .................................... TTAGATTGCGGGGGCTAGTGACGCCATAGTTTAACGACA 87909 36 100.0 36 NNNNNNNNNN .................................... AAAGATATTAGGCTATCCTTCGGGGTAGTCTTTCTT 87981 36 100.0 35 NNNNNNNNNN .................................... AAGTGTTGTTGCCTAGTGTTATACCAGAATATCCC 88052 36 100.0 37 NNNNNNNNNN .................................... CTCATTAGTGCTATCTTCTTGTTGATGGATTAGAACA 88125 36 100.0 37 NNNNNNNNNN .................................... TCTACTCTGGTGAAGACCAAGTGGATTTCGTGGTGAT 88198 36 100.0 36 NNNNNNNNNN .................................... GTTAGTGCTTGGTTGTGGTTATGCTGCAACTAAGCC 88270 36 100.0 37 NNNNNNNNNN .................................... ATCGATATACTTTTTAGCATCAGCTAAATGATAAAAA 88343 36 100.0 35 NNNNNNNNNN .................................... TTAGAAAGTTTTGGTTAGTTTCCATTCCTCTTTTT 88414 36 100.0 36 NNNNNNNNNN .................................... TTTCTCCATTGTTAGTTAGTCATTTCCTTGACAATT 88486 36 100.0 36 NNNNNNNNNN .................................... TGGGATTCATGAACATGTTGATGGTGAATTATACCT 88558 36 100.0 41 NNNNNNNNNN .................................... TGATTAAATTAATATGCGTGATAGATTAACTCATTTTGGTT 88635 36 100.0 35 NNNNNNNNNN .................................... TTTTTTGGCATAACTCAGTAAGTCTTTTTTGTTTA 88706 36 100.0 39 NNNNNNNNNN .................................... AATACTAATCTTAAAGATCTTGGTTTAATTACATATCGT 88781 36 100.0 37 NNNNNNNNNN .................................... AACAATTGCAAGGTTTATAAGTAAATGAACAACAACG 88854 36 100.0 38 NNNNNNNNNN .................................... AAATCCAACAACTTCTCCACATTTACTCCACTAGTCTC 88928 36 100.0 40 NNNNNNNNNN .................................... CTCCTACTTGTGCAGCCTCTAGTCCGCTTTTTAGATTGCG 89004 36 100.0 39 NNNNNNNNNN .................................... GCTTCGCTTCTTTCGCTTTCTCAACATAAAACTCATGAT 89079 36 100.0 35 NNNNNNNNNN .................................... CTAAAGTATGGTAACTCTGGGTAATTTTTTAACAG 89150 36 100.0 37 NNNNNNNNNN .................................... CTTATCTTTTTCTAGCGTAACAAAAGAATAATCAGGA 89223 36 100.0 40 NNNNNNNNNN .................................... TTTCAACCAAAAGCTTATTGGCTTCTACGGACTCACGAGC 89299 36 100.0 39 NNNNNNNNNN .................................... TCTGAACTACTTTTTTTTCAACGACTTCACCATGGGAAG 89374 36 100.0 39 NNNNNNNNNN .................................... AGTTTTAGATGCACCAATTACATCTTCTTCCATAAAGGA 89449 36 100.0 46 NNNNNNNNNN .................................... ATTCAAGACCTCCGGTGGTCAGAAGACTGTAGCAACAAAGCTTGAG 89531 36 100.0 39 NNNNNNNNNN .................................... TAGATCAGGCATCCAAACTCTTGGGCGATGTCGCGTAAC 89606 36 100.0 36 NNNNNNNNNN .................................... CGATGTAGCTCATAGCGACCTCGATAATTAATTGAT 89678 36 100.0 39 NNNNNNNNNN .................................... ACCAAGCTAGTCACTATCCGATCAACCGTCGTTGCAGGT 89753 36 100.0 42 NNNNNNNNNN .................................... TATCAAGAGTTGTCTAGTCAGTTCCAAGAAAAACCCTGGGAG 89831 36 100.0 41 NNNNNNNNNN .................................... TGACCTGATTCCTCGAGAATTGAGACTCCTAAAGAAATTGC 89908 36 100.0 35 NNNNNNNNNN .................................... AGTTCCAGTCGTGCTCCAAGGGCTCTTCGTCTTCA 89979 36 100.0 47 NNNNNNNNNN .................................... AACTTTGGAAAATTGCCTTCATACCATTCTTTTGTTAAACCGTTGTT 90062 36 100.0 37 NNNNNNNNNN ...........C........................ AGCAACAAAACAGCCAGCAGCAATTAATAAATCAGTT 90135 36 100.0 39 NNNNNNNNNN .................................... ACTCCGTGGCGTCGTACCGGTACGCCTGGGCTTCGTCCA 90210 36 100.0 43 NNNNNNNNNN .................................... TGAAATAACCCCCATAGCGGTGGCCATGGGGGCGTTTTACTAA 90289 36 100.0 40 NNNNNNNNNN .................................... ATATCTGTTAGCTCAATTTGAGCAAGTTCATCATTTTTTA 90365 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 39 36 38 GTCTCCACTCGTAGGAGAAATTAATTGATTGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: F [matched GTCTCCACTCGTAGGAGAAATTAATTGATTGGAAAC with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-2.80,-1.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [48.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [208,308] Score: 0/0.18 # # Final direction: F [1.28,0.27 Confidence: MEDIUM] >NC_020247 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 1648592 24 100.0 36 NNNNNNNNNN ........................ ATCATTGGAATTGGGCTAGCCCTATTTTTCTTGATA 1648652 24 100.0 35 NNNNNNNNNN ........................ AGTTGGTAGTGGGCAGATATCTAGCCCTGACCACT 1648711 24 100.0 36 NNNNNNNNNN ........................ TGATGTCGAATACCGGAGTCAAGATGTTGATGAAAA 1648771 24 100.0 37 NNNNNNNNNN ........................ AAATAACGAAGATTTAAGTGGTTTTGAACCAAGAGAA 1648832 24 100.0 37 NNNNNNNNNN ........................ TGATCACATGTTTTATCGGTAGTACATAATGTAGAAA 1648893 24 100.0 35 NNNNNNNNNN ........................ GAGGAGTTTGATAAACTTTTGGAATTTCTTGAGAG 1648952 24 100.0 34 NNNNNNNNNN ........................ GAAATATAGCAAGAGTTCTGTGGTCGCTATATTA 1649010 24 100.0 37 NNNNNNNNNN ........................ ATCATTAGCACGATATTTCATCATCACTGCAGTAATC 1649071 24 100.0 35 NNNNNNNNNN ........................ CTCAAAAATATAATGCGTAAGCTTAAATACCCAAC 1649130 24 100.0 36 NNNNNNNNNN ........................ TTTTTATTCTATATTTGAATAAAGCATAAAGTAATC 1649190 24 100.0 35 NNNNNNNNNN ........................ CTAATATTAATGGCAGTAGAAGTCTCGAACAACAC 1649249 24 100.0 35 NNNNNNNNNN ........................ TATCTCGCAATAAATGAGAGAGAGTCGGCGAGTGT 1649308 24 100.0 37 NNNNNNNNNN ........................ TATGTTTGTTGTATTGCTAGCGTAATATTGTATTACA 1649369 24 100.0 36 NNNNNNNNNN ........................ ACACAATATCTTAGTCATTACTGGAATGACTACAAC 1649429 24 100.0 37 NNNNNNNNNN ........................ ATCATTAGCACGATATTTCATCATCACTGCAGTAATC 1649490 24 100.0 35 NNNNNNNNNN ........................ TGTAGTAAATTGATATAATCGGATTGAAGAGAGTG 1649549 24 100.0 34 NNNNNNNNNN ........................ AGGGATATCTGGAAGTAATACACCAGTACTATAC 1649607 24 100.0 37 NNNNNNNNNN ........................ GCCATTCAACTCAAAACTTATAGAAGATTACGAAATA 1649668 24 100.0 37 NNNNNNNNNN ........................ CCAAATGCTAAAAATAGAAAAGGTAGGAGAGTTATTA 1649729 24 100.0 37 NNNNNNNNNN ........................ CGGTCTTCCAAAATTACTTAATGCTCTTGATAATAAA 1649790 24 100.0 37 NNNNNNNNNN ......................G. TAAGGCTAATTTTGATCGATAAAGATGAAGAAGAAAG 1649851 24 100.0 38 NNNNNNNNNN ........................ TATCTAACCCTCTCTTTTTCAACTCTTTGAAGATAAAA 1649913 24 100.0 37 NNNNNNNNNN ........................ CCTCCCTGATATTCACCTTCTCCATTTCCTGTAGCAA 1649974 24 100.0 36 NNNNNNNNNN ........................ ACCAACTCTCAATTACTCATAATATTCAAACTAAAT 1650034 24 100.0 35 NNNNNNNNNN ........................ ATTCCGACTTGCTTAAATTCAGCTTTTTTGTACAA 1650093 24 100.0 35 NNNNNNNNNN ........................ ACAGTAGTAGCTCCGGCTGTCATTCCTAATAATAT 1650152 24 100.0 34 NNNNNNNNNN ........................ AAATGATATAAAAAATGAACAACAGAATATAAAA 1650210 24 100.0 38 NNNNNNNNNN ........................ AACAAGAATTGATGAAGTATTCAAAAGAGCGATATGAA 1650272 24 100.0 39 NNNNNNNNNN ........................ CTTTCAGAGGGCGAGATCGCAGAGTACTTGAGAATAGCG 1650335 24 100.0 35 NNNNNNNNNN ........................ ATTTCTGCAAATGTATAATACATCAATTTTATAAT 1650394 24 100.0 35 NNNNNNNNNN ........................ GCATCAGCAATTATGGAAGTCGCTAGATATTACTA 1650453 24 100.0 39 NNNNNNNNNN ........................ AGGAATGTGTACAACAGCTATAAAAAAAGAAAGAATTGT 1650516 24 100.0 36 NNNNNNNNNN ........................ TTTGGAATATCTTGCGAGGCGAGGGTGAGTGAACCT 1650576 24 100.0 35 NNNNNNNNNN ........................ AATAAAAGGAGATTTCATAGACTCTATTCTCAAAA 1650635 24 100.0 36 NNNNNNNNNN ........................ TTGTTCTAGAAGTGGCGCATTAAACGGCAGTTTTTG 1650695 24 100.0 37 NNNNNNNNNN ........................ GAGAGACAAAATTTCCAAGTAAGTGACTCTGAAAATT 1650756 24 100.0 37 NNNNNNNNNN ........................ AATATACGCTGCATAATATACGCTCTCTTACGCTAAG 1650817 24 100.0 38 NNNNNNNNNN ........................ AGAGTGGCATACCTTATTTGTTTTGTTGAGTTATGAAG 1650879 24 100.0 35 NNNNNNNNNN ........................ TTCCATTTTCTTCATAAGTAGCATCTCTCAACAAT 1650938 24 100.0 33 NNNNNNNNNN ........................ ATAACAATTGTCGGTAACTTATTTAGACGCTTA 1650995 24 100.0 37 NNNNNNNNNN ........................ TTTGATACGATTACAATAAAGTTCACTTAAAGTAGAC 1651056 24 100.0 34 NNNNNNNNNN ........................ AAAGTCTATTTTTATTTTATCTTTATCTATCAGC 1651114 24 100.0 37 NNNNNNNNNN ........................ ATTGGATAGTCAGTACCAAAAGGTACATTAAGCCACT 1651175 24 100.0 36 NNNNNNNNNN ........................ ATCATTAATAGAATACGAAAAGCTAAAAGCAAAAAA 1651235 24 100.0 37 NNNNNNNNNN ........................ ATGTAGATAACATCACTATATTGATAAAGAGACTCGT 1651296 24 100.0 34 NNNNNNNNNN ........................ AAAATCATTGAACTATAATGTAGATCTTGCAGTA 1651354 24 100.0 35 NNNNNNNNNN ........................ TTTCCAGCCCAGCCTCTTTGCAGCTTCTAGCCTAT 1651413 24 100.0 36 NNNNNNNNNN ........................ ATCTAGTGAGACAAAAAGAACCTCAGTCTCAGAGTT 1651473 24 100.0 37 NNNNNNNNNN ........................ TTCCTTATACACATCAAGTAACACAGGCGAGTTCATC 1651534 24 100.0 36 NNNNNNNNNN ........................ TGCGGGATACTACTTCGCCCCAAGTTCTGTAAAGAC 1651594 24 100.0 34 NNNNNNNNNN ........................ TGGTGAACTGGTACAGATACATCCTTATGAAGAA 1651652 24 100.0 37 NNNNNNNNNN ........................ CCATTACTGGACAAAGACTATGTCATCACAGCTGGTG 1651713 24 100.0 36 NNNNNNNNNN ........................ TTAACACTGGTTGAATTCGCAAGGAAAGTGATAGGT 1651773 24 100.0 37 NNNNNNNNNN ........................ AGATATTTAGCGTTAAAACTGCAGGAGACAGGGGCAC 1651834 24 100.0 34 NNNNNNNNNN ........................ AAGTTTTTGATATCTGTCCCTGCAGTGTCTAGTG 1651892 24 100.0 40 NNNNNNNNNN ........................ CTTCATACTCATACCAATTGTAAGTGTTTCCTTGTGTTGA 1651956 24 100.0 35 NNNNNNNNNN ........................ TCTTGGAAAGACCTTAAAAAAAGGATTGATTTATT 1652015 24 100.0 35 NNNNNNNNNN ........................ TCGCATGCCTTAAATCGATCGTTTTCTCTACATCT 1652074 24 100.0 38 NNNNNNNNNN ........................ TACGCTCCATGCCCAGCTGTGCTCTCATCAACACATAG 1652136 24 100.0 35 NNNNNNNNNN ........................ GCGAGAAAGACTTCTACTGGGGCGCCGAATTTAAC 1652195 24 100.0 36 NNNNNNNNNN ........................ ATCGCTGAGATCCTAGCGACTTTCTACCTGCCCGAT 1652255 24 100.0 34 NNNNNNNNNN ........................ CGCTAAAGAACGCCCTAAGGGAAGCCTTCAAATA 1652313 24 100.0 35 NNNNNNNNNN ........................ TATCGCCTCACGCCATCTCTTTGGCGTGGTATAAT 1652372 24 100.0 38 NNNNNNNNNN ........................ AAGTCGCAAAAGAACTGCTAGACAAATTTGACAGTGAA 1652434 24 100.0 38 NNNNNNNNNN ........................ TGACTTATTTTTTGTCTTAACTTCACTACTCATTTTCT 1652496 24 100.0 36 NNNNNNNNNN ........................ AAAGAACTCATTATCTTTAAGGACAAAGTCAGGGGT 1652556 24 100.0 36 NNNNNNNNNN ........................ TTCCCCTGCGGATACTTCTGCCTCAATTTGGTCACA 1652616 24 100.0 35 NNNNNNNNNN ........................ AAACCTTTTCAGAGGCTTACCTCATCAATGTGGAA 1652675 24 100.0 34 NNNNNNNNNN ........................ AAAGAAAAAGAAAAGGCGGGGGCGAGGGCATGGA 1652733 24 100.0 35 NNNNNNNNNN ........................ TCTGTGTAACGTATCAGCAATGCGCTTTGTTATAT 1652792 24 100.0 34 NNNNNNNNNN ........................ GCGGATTTCCACTGTTTCCAGCCTGAGCTTGGGC 1652850 24 100.0 36 NNNNNNNNNN ........................ AGCAAATTTTTAACAAATGTATTCCATTCTTGAAGT 1652910 24 100.0 36 NNNNNNNNNN ........................ AATTTTATAATGTCTGTAAAACTAAAACATTGTTTT 1652970 24 100.0 41 NNNNNNNNNN ........................ AAGGGATCTAGCCTGGCTAGAGAGCTTGCCGCTTTAATTAA 1653035 24 100.0 36 NNNNNNNNNN ........................ ATGGGTGCACCACCAGAAGTAGTAGAAGAGGTCGAG 1653095 24 100.0 36 NNNNNNNNNN ........................ TGTATTGCCCACAATGTCCCGTTTTCGTTGTACAGG 1653155 24 100.0 35 NNNNNNNNNN ........................ CAAGAGAAAGGAGCTAGGAAGAGGATCTTTTCCCT 1653214 24 100.0 36 NNNNNNNNNN ........................ ATTAGGACTCGAAAAATTTATATAAAAAAAGACATT 1653274 24 100.0 37 NNNNNNNNNN ........................ TTCTCATCAACATTTGCTGTACAAATTTCATAATCAT 1653335 24 100.0 37 NNNNNNNNNN ........................ ACCAGTCTTACTCAACAAGTCAGCCCTTACTTATAAT 1653396 24 100.0 35 NNNNNNNNNN ........................ CTCAGTCAGATACGTCTTCTTTAGCTGGCTTATGT 1653455 24 100.0 35 NNNNNNNNNN ........................ ATCGAGTGGAAGGCGTTAGACCCAGTAGCTGCCGC 1653514 24 100.0 34 NNNNNNNNNN ........................ AGCCTGGATCTGAAGAAACATAACCATGAGATAT 1653572 24 100.0 34 NNNNNNNNNN ........................ AGGTCAGGAATATAGATTATTCGTACTTTGCTAT 1653630 24 100.0 34 NNNNNNNNNN ........................ AAGTCTTCAGAAAATCATCAACACGCATATACTG 1653688 24 100.0 34 NNNNNNNNNN ........................ TTTGATTAAAATGGGTTGGTATGGCATAAAAAAT 1653746 24 100.0 40 NNNNNNNNNN ........................ ATCGGAATTATAGGCGGATTTTTAACAATATTCCTAACAT 1653810 24 100.0 33 NNNNNNNNNN ........................ GGAGACAAAGTTTGTCTGTGCAATATATCCCAA 1653867 24 100.0 34 NNNNNNNNNN ........................ AGAAAGAGGAACATAAGGTCTAGATCTTACCCAA 1653925 24 100.0 35 NNNNNNNNNN ........................ TAATTCATCTTTATAGTGTAACTTTTTGAAATAAA 1653984 24 100.0 39 NNNNNNNNNN ........................ AACTAAGAAAAATTCAGTCAGCAGTATTAACTACTACTA 1654047 24 100.0 36 NNNNNNNNNN ........................ TACACCAGTGAGAATGTCTTCCCGAAACTACAAGAA 1654107 24 100.0 35 NNNNNNNNNN ........................ AATTGGCAACTAAGAAGTTTGTACAAATAACATAA 1654166 24 100.0 35 NNNNNNNNNN ........................ GAATAGGGGATGCGATAAACCAGTTAGCACAACAA 1654225 24 100.0 35 NNNNNNNNNN ........................ GGCATATAGAATTTTTCGCTTTGTTGCCTCTTTAA 1654284 24 100.0 35 NNNNNNNNNN ........................ ATTCAATTTTTTTCGTTTTGTCGGTGAAAATAAAA 1654343 24 100.0 34 NNNNNNNNNN ........................ GCTTGTGGTAACTATTCCATCGTCATCAGCAATC 1654401 24 100.0 37 NNNNNNNNNN ........................ AACGCATTATTGCTAATGCACGGTGCTAACAATCTAG 1654462 24 100.0 35 NNNNNNNNNN ........................ GTTTAAAACGGTAAATAGATAAAACCAAGAAAATG 1654521 24 100.0 35 NNNNNNNNNN ........................ ACGTCTTGTGCTGACTTGTAAACATCGCTGTTCTT 1654580 24 100.0 34 NNNNNNNNNN ........................ AAAGAAGTGCAAAAAAATGGCTACGGTGTACATT 1654638 24 100.0 34 NNNNNNNNNN ........................ ATGCATTCATTAAAGACTTAACAATTCAAGAGTT 1654696 24 100.0 34 NNNNNNNNNN ........................ AAGTTTCTTAATTTATTACAGTTATATGAACAGC 1654754 24 100.0 36 NNNNNNNNNN ........................ ACAATAGCCCGCAAATGTCAGTATCATCACGTTGTT 1654814 24 100.0 36 NNNNNNNNNN ........................ AGATTTTATGAAACATTAACTATTTATTTTATCTAT 1654874 24 100.0 36 NNNNNNNNNN ........................ ATTAATCAGATAGAAACTAGCAGTGTTTTTTATGTT 1654934 24 100.0 36 NNNNNNNNNN ........................ ACCTTCACTTATTGAAGATGGGGCTGAAACAACTTT 1654994 24 100.0 35 NNNNNNNNNN ........................ TTGGTTACTGATATTTTCTGAACTCCAGCAAATGT 1655053 24 100.0 35 NNNNNNNNNN ........................ CGTTAAACAGACTAGGCTCAGGACAAGCATTCACT 1655112 24 100.0 35 NNNNNNNNNN ........................ AGCCCAAATCTGTTATCTCTTTAGAATGAAATTTT 1655171 24 100.0 36 NNNNNNNNNN ........................ AGAGTACCTTTACCTAACCAGAGCGTCGTATATTAT 1655231 24 100.0 35 NNNNNNNNNN ........................ TGTAGTCTTGCGCAATACCTGCGCTCTTTAGCAGT 1655290 24 100.0 34 NNNNNNNNNN ........................ AGAAGCTATACAACGAGGCTATATAAATAAAATG 1655348 24 100.0 35 NNNNNNNNNN ........................ GTGAAGATGTCGATAGTGACGATAGCTGAGATAGT 1655407 24 100.0 38 NNNNNNNNNN ........................ AAAGTAAGCCCGATAGTCCTTAGGTCAGGATCCCTTTA 1655469 24 100.0 34 NNNNNNNNNN ........................ TATATTTGGTCAAGTGTTTCTACAGCATTTTAAT 1655527 24 100.0 35 NNNNNNNNNN ........................ GCAGAGTCTTTCGCTACGTCTTTCAGCGTCTCAAA 1655586 24 100.0 37 NNNNNNNNNN ........................ GATCACAGTAATGCGTTATATAAAAAGGCAGAATTCA 1655647 24 100.0 37 NNNNNNNNNN ........................ CTTTGATCAATTACTAAATTCTGTAATTGTGCCTCTA 1655708 24 100.0 36 NNNNNNNNNN ........................ GTAGAAAGTCATAACCCAAAACTTCATTTTTTTGTT 1655768 24 100.0 35 NNNNNNNNNN ........................ ACAGGCTGTACCAAGCTGTTAGCGATGTAGTTAAT 1655827 24 100.0 35 NNNNNNNNNN ........................ AGCTCCCATTAAAATCACGACCACTCCAAATATCA 1655886 24 100.0 30 NNNNNNNNNN ........................ AGTTATAATCTATCTCCGGAACATTAAAAT 1655940 24 100.0 41 NNNNNNNNNN A.........TAGT.TC..G.CGT TATTACATAGTTGGTGGGACGGAATGGAGAAACAGCTAAAA 1656005 24 100.0 39 NNNNNNNNNN ........................ TATAAAAAAGCATTTGCACAGTCTTGGAAACCACTATTT 1656068 24 100.0 36 NNNNNNNNNN ........................ ATGCTCGCCCACCAGCACACCGGACAGATCGACATA 1656128 24 100.0 42 NNNNNNNNNN ........................ AACTGAAGGAACCTTGTAGAGCGGTATGCTTTGCTTCTTCTC 1656194 24 100.0 37 NNNNNNNNNN ........................ AACTGGAGCAACGTATTGTTGAATATAGCCCCTATGA 1656255 24 100.0 34 NNNNNNNNNN ........................ AATGAGATATTCACTGAGGTCATGGAGCGTGAAA 1656313 24 100.0 39 NNNNNNNNNN ........................ TTTCCTTATTTTTTAACGAGGGAAATGGTCAGGCTAAAA 1656376 24 100.0 32 NNNNNNNNNN ........................ TACGGTAAACTGGGGAGTTAACTCAGCATCCA 1656432 24 100.0 38 NNNNNNNNNN ........................ CTTTCGCATACTTCCTCGCCCTCCTTGAGATATTTTCT 1656494 24 100.0 1 NNNNNNNNNN ........................ NNNNNNNNNN ========== ====== ====== ====== ========== ======================== 133 24 35 GTTTTAGTTTCTTGTCGTTATTAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.83%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [131,1085] Score: 0.18/0.18 # # Final direction: F [0.41,0.18 Confidence: MEDIUM] >NC_020307 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3904718 29 100.0 32 NNNNNNNNNN ............................. TCGTATCCCTGCAGCTCCAGCGCCCCTTCCTT 3904779 29 100.0 32 NNNNNNNNNN ............................. GTGTGATCTCATTTGGCGAGGGGTGCGTAAAA 3904840 29 100.0 32 NNNNNNNNNN ............................. AAGAGCGTCATATGCCTGCAAGGCAAAGACCA 3904901 29 100.0 32 NNNNNNNNNN ............................. TTCGTTAATTATATTACAATACAAATCATAAC 3904962 29 100.0 32 NNNNNNNNNN ............................. AGAGCGGCACTTACCTTAGTCCGCCGAACGCC 3905023 29 100.0 32 NNNNNNNNNN ............................. ACAAAAATCGCCGACGGCATTCGTACTGGTCA 3905084 29 100.0 32 NNNNNNNNNN ............................. CGGTGCCCCATATTGGCTATATGCTGACGCAA 3905145 29 100.0 32 NNNNNNNNNN ............................. CCAGTATCGGTAGCGCGGGTGAGGCGGCGGCC 3905206 29 100.0 32 NNNNNNNNNN ............................. TATTTTCTCGTGTGGCGGTCCATTGGCCGCTA 3905267 29 100.0 33 NNNNNNNNNN ............................. CTCATAGCTCGGATCACCGCGATATACCGGATC 3905329 29 100.0 32 NNNNNNNNNN ............................. GGAGGACGCTACTATCGGATTCGCTCCGGGGA 3905390 29 100.0 32 NNNNNNNNNN ............................. GGCGGCAATATCCATCACTCAGCACCAGGGAA 3905451 29 100.0 32 NNNNNNNNNN ............................. GGGTCAAATATGGGGTTATTGGGAGGGAGCGG 3905512 29 100.0 32 NNNNNNNNNN ............................. CCCCTACAGTTGCCACCGCGTACAACTCAACA 3905573 29 100.0 32 NNNNNNNNNN ............T................ CCATACCATTTCCACTGGCGCAACGATTTTTG 3905634 29 100.0 1 NNNNNNNNNN ...............A.AA.....GC.GT NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 16 29 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-13.40,-12.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [298,99] Score: 0.18/0.18 # # Final direction: F [1.83,0 Confidence: HIGH] >NC_020247 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 1823994 25 96.0 36 TAATTGCCGT ..........T.............. AGAGTCCCCTTCAACATAAAACCTAACTTGGTTTGG 1824055 25 100.0 38 CTTGGTTTGG ......................... ATTATCGACTCCCTAGACGTTCACATAAGCGACAAGAT 1824118 25 100.0 37 GCGACAAGAT ......................... TAGCTCTAGCAGGAGAAGAGGCTAATGTTAGCAGAGC 1824180 25 100.0 41 TTAGCAGAGC ......................... TGCGGAAATATGGAAAGAAGTATTATGAAAAAAGGAGAAAA 1824246 25 100.0 36 AAGGAGAAAA ......................... TCTCGTATGACTTGCTGTCCAATGACATAATAAACT 1824307 25 100.0 38 ATAATAAACT ......................... CTGTCATTAGCACAGGCTGGCATACTTTATTTATACCC 1824370 25 100.0 37 ATTTATACCC ......................... AAAGTTCTAGTCAGCCAGCACCTGAAAATAGGGTGCT 1824432 25 100.0 39 ATAGGGTGCT ......................... GAGTTTAAAAAGCTTTAAACAGTACGCAAACGATTTGAG 1824496 25 100.0 42 ACGATTTGAG ......................... TATGAACTAACAGATAAAGGGAAGAGAAGTGTTCCCAAAACT 1824563 25 100.0 39 TCCCAAAACT ......................... CTTTAAGATTGAGCTTGACAAATATTTCTGTGAACAGAG 1824627 25 100.0 GTGAACAGAG ......................... TGGTTTGTTT ========== ====== ====== ====== ========== ========================= 11 25 38 CTTTCAATCCCTTTTGGGATTCATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: R [matched GATTAATCCCAAAAGGAATTGAAAG with 92% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-6.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [357,445] Score: 0/0.18 # # Final direction: R [0.37,5.41 Confidence: HIGH] >NC_020247 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 1668885 24 100.0 36 NNNNNNNNNN ........................ ATCTTCTCTGTCCTCTACTACTTTCTGCTCTTCTTT 1668945 24 100.0 36 NNNNNNNNNN ........................ TGAAAAGTTCATAAAAAAGTACCCTAACGTAGAACA 1669005 24 100.0 34 NNNNNNNNNN ........................ AATTTTATGATATCGCTTTTGTTCAAGGAAACAT 1669063 24 100.0 39 NNNNNNNNNN ........................ AATTCTAAGTGCACAAGAAGGACTAGAAGAGGCAGGCCT 1669126 24 100.0 34 NNNNNNNNNN ........................ TAATGCCCAGTAACATAGATGCCTCCTTGATTAT 1669184 24 100.0 35 NNNNNNNNNN ........................ AATTTGGATTGACGTCACCTCAAGATCTATTACCT 1669243 24 100.0 36 NNNNNNNNNN ........................ ATATTTAAGCCTTACTCTTTACATTAAAAGTAACAA 1669303 24 100.0 35 NNNNNNNNNN ........................ TCGACGTTAGTCTTAGATTTTTATCATTTTTAGGT 1669362 24 100.0 34 NNNNNNNNNN ........................ TTGTGCTCTTTAATGTCAAACAGTGTGATCTATT 1669420 24 100.0 35 NNNNNNNNNN ........................ ACAGTGCATGAAGTAGCATCATATGTCGTAAGTGA 1669479 24 100.0 36 NNNNNNNNNN ........................ TCTCTGGGTTAAGTGCAAAGAGCACTGGGATTACAA 1669539 24 100.0 34 NNNNNNNNNN ........................ CAACAAGGCTGAGAAGATAGCAAAGAAGCTAGTA 1669597 24 100.0 38 NNNNNNNNNN ........................ TACAATAATTTCAGATTTCCAGTAAATGATACAAATTC 1669659 24 100.0 36 NNNNNNNNNN ........................ TTGTCATTAAACTGACAACTTTGTCTCTGACCCAAA 1669719 24 100.0 34 NNNNNNNNNN ........................ AGTAGCGGTATACAAAAATGTATTTGTTGTGATA 1669777 24 100.0 34 NNNNNNNNNN ........................ TGGCTCACAGGCATTAATACCTGCAAAGCCTAGG 1669835 24 100.0 39 NNNNNNNNNN ........................ AAAAGTTTGCCAATTTAGGTGCTGTGCAGGAAGCATTTA 1669898 24 100.0 34 NNNNNNNNNN ........................ GAATAATTGTAGATCAGCCATCAACTTCCACACG 1669956 24 100.0 36 NNNNNNNNNN ........................ AGAAAATGAGTAGTGAGATAAAGACAAAAAATAAGT 1670016 24 100.0 39 NNNNNNNNNN ........................ AATTTCTATATAATCCAAGAGACACAGAGAGGTTTCTAC 1670079 24 100.0 37 NNNNNNNNNN ........................ TACATTACTTTTAGAAATATAGTATGAGCGTAACATA 1670140 24 100.0 33 NNNNNNNNNN ........................ CAGTACACAAAGTGGATAGGAAAAGTCAACAAT 1670197 24 100.0 36 NNNNNNNNNN ........................ ATCGTATATTATATTGGGGCAGAAAAAATGAATGAT 1670257 24 100.0 34 NNNNNNNNNN ........................ CAGGTTCAATTTCAGTAAATAATGGCATTACAAT 1670315 24 100.0 38 NNNNNNNNNN ........................ AACATCAGACTTTTGCACTTTTATTAGAAGGCTTTGGA 1670377 24 100.0 34 NNNNNNNNNN ........................ GATACATTGCATATATTGGCAATCAGCAATACAA 1670435 24 100.0 36 NNNNNNNNNN ........................ ACTATATATTGTTTGGAGCTTATCATAAACTTCATC 1670495 24 100.0 34 NNNNNNNNNN ........................ CTGAATAGAGAGATGATAGAAGAAACGGTAAGTA 1670553 24 100.0 39 NNNNNNNNNN ........................ TCAGCCTCTAATTCTGCTGCAACTTCCATCAATTTCCTT 1670616 24 100.0 39 NNNNNNNNNN ........................ ATTAATTCCAAAGGACATTGAGAAGAAATTTGGCTTAAA 1670679 24 100.0 37 NNNNNNNNNN ........................ ATATGAGCAACAGCAACTCAAATCTTTATATGAAGTC 1670740 24 100.0 34 NNNNNNNNNN ........................ CACCAAAGAGTTTTTGTCCAAAGCCTTTTATGGA 1670798 24 100.0 37 NNNNNNNNNN ........................ CAGTCTCAATGTCTTTATGAGACAATTCTATATCCAA 1670859 24 100.0 36 NNNNNNNNNN ........................ GCACTTCTACTTGCTTAACGCTATAGCAAGCAAGAA 1670919 24 100.0 38 NNNNNNNNNN ........................ GTTCATCAACCTCATGCTGAGTAAGACTATTAGTATGT 1670981 24 100.0 36 NNNNNNNNNN ........................ CTCGTATTCGTAAAAGCCCTCGTGGGTGGTGACGAT 1671041 24 100.0 35 NNNNNNNNNN .......................A CTTTACAACTAATTTTTTCAGGAAAACAAATTGAA 1671100 24 100.0 34 NNNNNNNNNN ........................ TATGTCTTAGATAGTTGAAAAAGCTAAAGCTTTT 1671158 24 100.0 36 NNNNNNNNNN ........................ GAATGTGTCCCCCTAGAGGTTTTCACCAAACAACCA 1671218 24 100.0 36 NNNNNNNNNN ........................ AAAAAACCTTTAACCTCTATCGAATGCTGTCAAAAA 1671278 24 100.0 35 NNNNNNNNNN ........................ AACGTTACGACCACTACTACTCAGAAGAAGATAGT 1671337 24 100.0 37 NNNNNNNNNN ........................ GAGGGATGAAGGCAAATCAGTATCAGCAATAGTAGAG 1671398 24 100.0 35 NNNNNNNNNN ........................ GAAGTAGAACAGCTGTTTTTCAGGATTGAAATTAT 1671457 24 100.0 39 NNNNNNNNNN ........................ AAGAGAATACTTTCTCGCCTCAGCAAGAATCGTATCAAT 1671520 24 100.0 35 NNNNNNNNNN ........................ GTATGTGGGAGAGCTTTATGAGTGGTAAGACACAC 1671579 24 100.0 33 NNNNNNNNNN ........................ ATGCAGGTACTATACTGAGCCTGATGAACAGCA 1671636 24 100.0 34 NNNNNNNNNN ........................ AAATTTAAGGAAAATGGAGTGTATGTATATAAAT 1671694 24 100.0 35 NNNNNNNNNN ........................ CTCAATTATTTTCAATGCTTTTTCTTTTTCGTTGT 1671753 24 100.0 36 NNNNNNNNNN ........................ ACATCAGCACTTATGGATACTACGCCATGCTCATCT 1671813 24 100.0 35 NNNNNNNNNN ........................ ACTATTACTTTTGAAAATATGTAGATAAGACTGGT 1671872 24 100.0 34 NNNNNNNNNN ........................ TTACAGTTGTTCCGTTAGGAAGTATATAGTTACT 1671930 24 100.0 37 NNNNNNNNNN ........................ AAAATAATCATAAAACCCGAGCATTACGAAGAATTGA 1671991 24 100.0 37 NNNNNNNNNN .......T................ TGTAAAGGACTTCTTAAAAAGGTTAGAGGGGTTTCTC 1672052 24 100.0 35 NNNNNNNNNN .......T................ GTAATTATTCTGATGGGTGCTATAATCTCGATGGC 1672111 24 100.0 35 NNNNNNNNNN ........................ AGCGATTAGTTTAGTCGAATTAGCTATTGCGACTT 1672170 24 100.0 34 NNNNNNNNNN ...........G............ ATGGGATCCTGATAATTCGGCATCAGCACAATTC 1672228 24 100.0 35 NNNNNNNNNN ........................ CTCTTCATTTGTCTCGTGAAATATAGGGTTTTTCA 1672287 24 100.0 35 NNNNNNNNNN ...........G............ ATAGGGTAGTTCACAAAGAGCCAGCCCTCGTCAAC 1672346 24 100.0 35 NNNNNNNNNN ........................ CTTTACGTAGTAGTTATAGAGCTTCGTTACGTGCT 1672405 24 100.0 38 NNNNNNNNNN ........................ CTTGAACCATTGAACCTGCGATTGCAGGGATTAAGTAT 1672467 24 100.0 36 NNNNNNNNNN ........................ GCTGACTGGGGGTGAGCCAGAAATGAAGACTGGAAG 1672527 24 100.0 36 NNNNNNNNNN ........................ TAAAATTAGTCTGCTGGCCAATTAAGAACAAACTCT 1672587 24 100.0 35 NNNNNNNNNN ........................ GTGCAACAGGGTGAAACATAGATGAGCACATTTTT 1672646 24 100.0 35 NNNNNNNNNN ........................ ATTATGCTCATTATCTCTGATTTCGACCTTAAAGC 1672705 24 100.0 37 NNNNNNNNNN ........................ CTACATTGTCCTGAAGTCCTAACTTCTTTAATTCCTT 1672766 24 100.0 39 NNNNNNNNNN ........................ TTTTTATTTTCAGTAGCTATCACCATAGTAGCCCTAAAA 1672829 24 100.0 37 NNNNNNNNNN ........................ TACTCCCCAGGCTTACCCAGCAAGAAGAGGAAGCCTT 1672890 24 100.0 35 NNNNNNNNNN ........................ TAGGAGGAAAATATAGGAATATAAAGATAGTACTA 1672949 24 100.0 35 NNNNNNNNNN ........................ TAGGAGGAAAATATAGGAATATAAAGATAGTACTA 1673008 24 100.0 35 NNNNNNNNNN ........................ TAGGAGGAAAATATAGGAATATAAAGATAGTACTA 1673067 24 100.0 35 NNNNNNNNNN ........................ TAGGAGGAAAATATAGGAATATAAAGATAGTACTA 1673126 24 100.0 35 NNNNNNNNNN ........................ TAGGAGGAAAATATAGGAATATAAAGATAGTACTA 1673185 24 100.0 35 NNNNNNNNNN ........................ TAGGAGGAAAATATAGGAATATAAAGATAGTACTA 1673244 24 100.0 36 NNNNNNNNNN ........................ CATTTTAGCTCAAGCATCACCAGCATCAATTGAAAG 1673304 24 100.0 36 NNNNNNNNNN ........................ ACCGTTCCGTAGATATTATTACTGTAACTCCCTCCC 1673364 24 100.0 37 NNNNNNNNNN ........................ ACTGGGCTCCCCGTGATCACTCCAGGTCCTTATGTTG 1673425 24 100.0 36 NNNNNNNNNN ........................ GACGCTAAAAAGCAAGAACAACAATCACAACAATCG 1673485 24 100.0 36 NNNNNNNNNN ........................ TTTCTTAGTGAATCCCATGTACGTATATCTAATTTA 1673545 24 100.0 1 NNNNNNNNNN ........................ NNNNNNNNNN ========== ====== ====== ====== ========== ======================== 79 24 35 GTAATAACGACAAGAAACTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.83%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [223,575] Score: 0.18/0.18 # # Final direction: F [0.68,0.18 Confidence: MEDIUM] >NC_020247 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================== ====== 1784394 26 100.0 40 ATATATACTT .......................... CTACCTTTTGAGATGCTTTCACCGATCTATGTTAAAGCAA 1784460 26 100.0 35 GTTAAAGCAA .......................... CTCGTTTTCAATAAATGTCTATAGGGATGAATGTG 1784521 26 100.0 36 GATGAATGTG .......................... GATACGTTGCAGGCAGATGATGAGAGATGATGATAT 1784583 26 96.2 ATGATGATAT G......................... TGATGTATTT ========== ====== ====== ====== ========== ========================== 4 26 37 ACTTTCAATCCCTTATGGGATTCTTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.54%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [688,636] Score: 0/0.18 # # Final direction: R [0.78,4.5 Confidence: HIGH] >NC_020307 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3915194 29 100.0 32 GTGGATTTAT ............................. GCCTTTTGAGTGCCGTTTTTGCGTGTTTTGAG 3915255 29 100.0 32 GTGTTTTGAG ............................. TTAAATCGCGCTTTCTTGTTACGCGGGTTACG 3915316 29 100.0 32 GCGGGTTACG ............................. CCTCTAATTTCATAAAATCACCTGCAAATAAT 3915377 29 100.0 32 TGCAAATAAT ............................. GCCACGCCATTTACGCCTGTATAATTTACCAA 3915438 29 100.0 32 AATTTACCAA ............................. AGAGCAGGAGATCGGCACCAGTTTTTCCAGCA 3915499 29 100.0 32 TTTTCCAGCA ............................. GGGTGAGTGTAACCTATTAATATTTAATTAAA 3915560 29 100.0 TTTAATTAAA ............................. GAAGTGGAGAGTCGCTGGAAAATGCTCATAAAA ========== ====== ====== ====== ========== ============================= 7 29 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-13.40,-12.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1272,77] Score: 0.18/0.18 # # Final direction: F [1.69,0 Confidence: HIGH] >NC_020260 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2820344 30 96.7 31 TACTCAATAA ................C............. TTCTGCGGGACAGCTCAACAACAATATCCGA 2820405 30 96.7 31 CAATATCCGA .............................A CCGCCAAATTATGGCTATTCTCTGGTCTTCG 2820466 30 100.0 31 CTGGTCTTCG .............................. GGCGCAATACACACTCGGCGACCTGCGCACG 2820527 30 100.0 31 CCTGCGCACG .............................. TGGCTACCGCGCTGATTGCCTGATAAACAAG 2820588 30 96.7 GATAAACAAG .................T............ TAAAAAGAACA ========== ====== ====== ====== ========== ============================== 5 30 31 CGGTTTATCCCCGCTCGCGCGGGGAACACT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-14.20,-14.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [50.0-51.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [378,280] Score: 0/0.18 # # Final direction: R [0,1.15 Confidence: HIGH] >NC_020260 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2820649 29 100.0 32 TTTACCCAAC ............................. AAACAACCCCATTTCGCAGGTCACCACCCTCA 2820710 29 100.0 32 ACCACCCTCA ............................. GCGCCGGTCTGGAAAATATTCCCGCCCTCCTG 2820771 29 100.0 CGCCCTCCTG ............................. TCTAAAACTATATAACTGT ========== ====== ====== ====== ========== ============================= 3 29 32 CGGCTTATCCCCGCTCGTGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [683,98] Score: 0.18/0.18 # # Final direction: R [0.55,0.64 Confidence: LOW] >NC_020260 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2847198 29 100.0 31 NNNNNNNNNN ........TA.G...G...G...A.CGCC AGAGAGCCGAAGCTGTTGCGCTTCATGAGCT 2847258 29 100.0 32 NNNNNNNNNN ...........................G. CAGTTGTATCAAATTTCCAAATCCAAACCGCC 2847319 29 100.0 32 NNNNNNNNNN ...........................G. GGGCCGCACAATCACAGACTATGACCCGTATG 2847380 29 100.0 32 NNNNNNNNNN ...........................G. TTAGGGCTGTAAATCCCCCACTGGATAGCGGT 2847441 29 100.0 32 NNNNNNNNNN ............................. GCAAAAAATACCGCCGCGACGCGAAGTGGATG 2847502 29 100.0 32 NNNNNNNNNN ............................. AAGTCTTTCGAAGCCTTCCGGCGCTGGGCCAC 2847563 29 100.0 32 NNNNNNNNNN ............................. ACGCAGGATGAGTCCGTCATGATGGGCCAGAG 2847624 29 100.0 32 NNNNNNNNNN ............................. ACGCTGGTATCTAATAAGCGTACCTATATTTT 2847685 29 100.0 32 NNNNNNNNNN ............................. CCGTTGTTGTCGGCTCTGTTATCGCTGTGTCG 2847746 29 100.0 32 NNNNNNNNNN ............................. GATCGCCTCATCAAAATCGGCGGTCGCAGGTG 2847807 29 100.0 32 NNNNNNNNNN ............................. GCGCAGCCAGCGTAAAGGCAGCCGGGAATGCG 2847868 29 100.0 32 NNNNNNNNNN ............................. GGCCAGTGCGTTGATAATAGACTCTGTGGCGT 2847929 29 100.0 32 NNNNNNNNNN ............................. GTAGCGCTGGCCCTTCTGTTTCGGCGCGCTGG 2847990 29 100.0 32 NNNNNNNNNN ............................. CGAGCCGCGATAATTACCAGGTCCTGCGCGTT 2848051 29 100.0 32 NNNNNNNNNN ............................. TACCTGCATTTTTCGACAGCCGCGCCAACGAA 2848112 29 100.0 32 NNNNNNNNNN ............................. TTGATTTTGGCAACCCATTCAATGCCCTGAGA 2848173 29 100.0 32 NNNNNNNNNN ............................. TACCGCCGCCCGAAAAATTGCCGGTATCGGCA 2848234 29 100.0 32 NNNNNNNNNN ............................. GAATGCTCTACTCCACCATTGACGTTGTTGTG 2848295 29 100.0 32 NNNNNNNNNN ............................. TTGCTGACCACCACTGTTACCGCCTCTGAACG 2848356 29 100.0 32 NNNNNNNNNN ............................. GTCGCAAATGTAAAACGCGACGTGGGCGCACT 2848417 29 100.0 32 NNNNNNNNNN ............................. GATTCGCCAACGGTGACGCCGGCGTTCGTATG 2848478 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 22 29 31 CGGTTTATCCCCGCTCGCGCGGGGAACAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [38.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [154,215] Score: 0/0.18 # # Final direction: R [0,1.42 Confidence: HIGH] >NC_020304 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 3932262 32 100.0 35 ATGAAGCAGA ................................ TGGTCGCTGAGATCAGGATCATCAGAAGTGGCTGT 3932329 32 100.0 34 AAGTGGCTGT ................................ TGATTAAGGGGTACTTATCAACCAAAAAAAGCAT 3932395 32 100.0 34 AAAAAAGCAT ................................ CTATGGATCAATTTCTGTTGGTGTCGAATCCCGT 3932461 32 100.0 34 CGAATCCCGT ................................ GCAACTTGTCTCCTTACGGAAACCTCTAAATCTT 3932527 32 100.0 35 TCTAAATCTT ................................ GCAGTAAGCTGCGCTCATCCGGGTGGATTAAAAAA 3932594 32 100.0 35 GATTAAAAAA ................................ TTTTAAATCACCTCCTGTTCACCCATGTGGCAGGT 3932661 32 100.0 35 TGTGGCAGGT ................................ GACATCACAAGATTCTCCGCTGTCAAGGATCTTAC 3932728 32 100.0 35 AGGATCTTAC ................................ CACCCCTGACGGAACTCCGATGATATCCCCTGATG 3932795 32 100.0 TCCCCTGATG ................................ TGTCAGCCTGC ========== ====== ====== ====== ========== ================================ 9 32 34 GTTTCAATCCACGCCCCCGCATGGAGGGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [6,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.10,-10.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [110,186] Score: 0/0.18 # # Final direction: R [0.37,4.87 Confidence: HIGH] >NC_020291 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 5276899 29 100.0 36 NNNNNNNNNN ..................C.......... TAAAAGAGAAATAGTAGTATGGTCAAAGATTAAAAT 5276964 29 100.0 37 NNNNNNNNNN ............................. CAACAACTGGTGGAAGTAGTGGTGGTTCACATCATTC 5277030 29 100.0 36 NNNNNNNNNN ............................. TTAGCCCACCCAATTTCTCTAAACATATAATAATTT 5277095 29 100.0 36 NNNNNNNNNN ............................. AAAGGAGAAATAAATTTAACTGATGTAATAAATATA 5277160 29 100.0 37 NNNNNNNNNN ............................. TCCGAAATATCCAAAGCACAAAAAGAAGGCAGAACAG 5277226 29 100.0 37 NNNNNNNNNN ............................. AATTTACACTAGAAGGGGCTACAAAGGAGCCAGTAAA 5277292 29 100.0 36 NNNNNNNNNN ............................. GTTTCTTAATTTGCTTTTTCCTCCCATTCTAGTAAT 5277357 29 100.0 37 NNNNNNNNNN ............................. ATGGAAAAATAATTATTGAAACTAGTCTTGATACCAA 5277423 29 100.0 36 NNNNNNNNNN ............................. ATAAATATCACTTGTAAATCTATCTATTGTACCTTT 5277488 29 100.0 36 NNNNNNNNNN ............................. GCAAGAAGCAATGTCGGGCATGATGGTATTAATGCA 5277553 29 100.0 37 NNNNNNNNNN ............................. TTCACATTTTTGAGTATACAACAACAAAATATATGCC 5277619 29 100.0 37 NNNNNNNNNN ............................. TTGTACAAAAATATCATCAATGATAATGTTATAATCA 5277685 29 100.0 37 NNNNNNNNNN ............................. TAGTAATAATATTTTCTTTAGAAGCTATAACAAAGTT 5277751 29 100.0 35 NNNNNNNNNN ............................. GTATAAAGAAACTTTTTGTATGTTGCCACGTAAGC 5277815 29 100.0 37 NNNNNNNNNN ............................. CTTCAATCGATAAGGATAAGCTTTCTTTTGAGGAAAA 5277881 29 100.0 37 NNNNNNNNNN ............................. CAAATTTATCATTTGAAGCTAAAATGGCTAATATGGT 5277947 29 100.0 37 NNNNNNNNNN ............................. TTACTTTTGATATATCAGTATTTTTAAATTCATAAAG 5278013 29 100.0 37 NNNNNNNNNN ............................. AAAACACAAGATTGTAACGTGGATGGCAACATTCCAC 5278079 29 100.0 36 NNNNNNNNNN ............................. AGATTTCAGAATTTTAATATTAAATGGTGATTGCGT 5278144 29 100.0 36 NNNNNNNNNN ............................. TTAAAATAATAATTCATTTATTGAGATAGGAGAATG 5278209 29 100.0 36 NNNNNNNNNN ............................. GTGATATCTTTTATTATTCTTAAGCAACCATTTAAT 5278274 29 100.0 36 NNNNNNNNNN ............................. AAATTGAACTGATTCATTATTGAATAGATGATCTAA 5278339 29 100.0 36 NNNNNNNNNN ............................. CAATTAATGTTAAACTTTCATCATCTAAACTCATTG 5278404 29 100.0 37 NNNNNNNNNN ............................. CTATGCAACAACGCGTCATAAGTGATTTAGAAGCATT 5278470 29 100.0 36 NNNNNNNNNN ............................. TCATAATATTCACGTATAGTCTTATCAACCATCTTA 5278535 29 100.0 37 NNNNNNNNNN ............................. TTAGACTATTGGCTTTGGGATAAATACGATAATAATA 5278601 29 100.0 36 NNNNNNNNNN ..........TGTT..AA.GTAG.TGC.T TTATCTTATTGAAAGCTGATAAATACGATAATAATA 5278666 29 100.0 36 NNNNNNNNNN ............................. CTATGGTTGGTGTTGTAGCTACAAGCGGTGGAGCTA 5278731 29 100.0 36 NNNNNNNNNN ............................. CCTTTACTAGTAAATCTACTCTAACTTTTATCCTAT 5278796 29 100.0 37 NNNNNNNNNN ............................. TAGAACATTATGACGTTTATAACATGGAATATATTGA 5278862 29 100.0 36 NNNNNNNNNN ............................. TTTGGAAATCTGATAGTTTTAGACAATATTAAAAGG 5278927 29 100.0 36 NNNNNNNNNN ............................. ATTGACAAAATTTATAAATCTGTTAAATTATATATG 5278992 29 100.0 36 NNNNNNNNNN ............................. AAAATTTATATAGAACATAAAGGGAATATTACTCCA 5279057 29 100.0 38 NNNNNNNNNN ............................. GCATTAAGAAATTTTTTTATAATATTAGCCATTCTATC 5279124 29 100.0 37 NNNNNNNNNN ............................. GTGATGCGATTGACTTCATTATGAAATATAAAAATTT 5279190 29 100.0 36 NNNNNNNNNN ............................. AAACTGAACTGATTCATTATTAAACATATGGTCCAG 5279255 29 100.0 36 NNNNNNNNNN ............................. TATTCTTTCTCTTTTATTCATGTGTATATCTCCTTT 5279320 29 100.0 36 NNNNNNNNNN ............................. TGATTATAATTCTTTCAATTCTTTAATTTCTTCAAT 5279385 29 100.0 38 NNNNNNNNNN ............................. GTTCTAAAAGTTATTGGAACTGGCACACTCCAATCTTT 5279452 29 100.0 37 NNNNNNNNNN ............................. ATGGAATTCAAAGAACATACAACTATGTAAAAAACGA 5279518 29 100.0 37 NNNNNNNNNN ............................. TAACATTATCCTTAATGTACTCTATCATTATTTCTTT 5279584 29 100.0 37 NNNNNNNNNN ............................. ATGATGTGTTAATATCTACAATAACAAATGTAAACCA 5279650 29 100.0 36 NNNNNNNNNN ............................. TTATACATTTATTGCAAGAAAAAAGCAATAAAAATA 5279715 29 100.0 37 NNNNNNNNNN ............................. AATGTGGAAAGCTTCAAAATTCAGAAATTATGATTAG 5279781 29 100.0 37 NNNNNNNNNN ............................. TTGATTAGTGACCATGTTAATGAAACAATTAATTTGA 5279847 29 100.0 36 NNNNNNNNNN ............................. CTTAACAAAACAATTAATGTCTATGGCATTTGAAAA 5279912 29 100.0 37 NNNNNNNNNN ............................. GAAGACAAGAAACTTGATGAACAAAAACAAATTCAAA 5279978 29 100.0 36 NNNNNNNNNN ............................. CTTTATGAAATTGAAGAAAAGAAGAAAAGCAGCAAG 5280043 29 100.0 36 NNNNNNNNNN ............................. TTTAAAGAAAAAAAGAGGCTGGAACGTGAAATTTGG 5280108 29 100.0 36 NNNNNNNNNN ............................. TGAATATATAATTGATGGGGATGGTATCTTAGTTGT 5280173 29 100.0 37 NNNNNNNNNN ............................. TTAGAGGTAATAAGTTAACTCTTATGAAATCTTATTT 5280239 29 100.0 36 NNNNNNNNNN ............................. TTTAATAGATTCAAATGGAAGATTAAAATAATTAAA 5280304 29 100.0 36 NNNNNNNNNN ............................. CTCTATAAGCATTGTAATAAGTTCCATATAAAGCAG 5280369 29 100.0 36 NNNNNNNNNN ............................. TTAAAAATACAACAGATACATTATTTATTTTTAATA 5280434 29 100.0 36 NNNNNNNNNN ............................. GTAACGCCAAAAAAGAACAATCAGAGAGTAGCCTAT 5280499 29 100.0 37 NNNNNNNNNN ............................. CTGAAATAGTTAACTGGTTTAAAAACATGAAGAAAAA 5280565 29 100.0 36 NNNNNNNNNN ............................. TTGATGAACATAAAATTGATATGAATAATATCCATG 5280630 29 100.0 36 NNNNNNNNNN ............................. CAAGTGATGCAGGAAAGTTTTACATGAAAATACCAA 5280695 29 100.0 37 NNNNNNNNNN ............................. GAAGAAAGTGAGGTTGATTGCAATGGCATTAGGTAAA 5280761 29 100.0 37 NNNNNNNNNN ............................. CTTTAGGCGGTAAATTAAGAACTTGTCTCCATTCATT 5280827 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 61 29 36 ATTTACATTCCTCATAGTTAATATAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:79.31%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [275,183] Score: 0/0.18 # # Final direction: R [0.27,0.41 Confidence: LOW] >NC_020384 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 179628 23 100.0 43 NNNNNNNNNN ....................... GATTGAAATACAAGATACGAGAATTTAATGACGTCACCCACAT 179694 23 100.0 43 NNNNNNNNNN ....................... GATTGAAATTATTGTTACACCTTTAGAGTATCCGAGTAAAAAA 179760 23 100.0 44 NNNNNNNNNN ....................... GATTGAAATACAATGGGAAAGTGTTAGGTTATGCACGTTTTAAA 179827 23 100.0 41 NNNNNNNNNN ....................... AATTGAAATGAAGATAGTAGAAGAAATCAAAAAAAGTGTAT 179891 23 100.0 42 NNNNNNNNNN .........T.........T... AATTGAAATTTTGTTGCTCCAGTCGTTATGATCGTCTTTGCA 179956 23 100.0 42 NNNNNNNNNN .......T.T............. GATTGAAATTAGGAGTTATTAATGGCTTTAGATGTTAGACCA 180021 23 100.0 43 NNNNNNNNNN .........T.........T.A. GATTGAAATTACCTCGGGTTTATATTTATCTGGAATGCCCATA 180087 23 100.0 42 NNNNNNNNNN ........CT............. GATTGAAATTTTGCAACTAGCTCAATTGTTTTTCCGTTTTCA 180152 23 100.0 43 NNNNNNNNNN ....................A.. GATTGAAATTACCTCGGGTTTATATTTATCTGGAACGCTCATA 180218 23 100.0 42 NNNNNNNNNN .........T.A.......T... GATTGAAATATAATATCACAATTTTGACAAAATTCAGTCATG 180283 23 100.0 1 NNNNNNNNNN A.T.................T.. NNNNNNNNNN ========== ====== ====== ====== ========== ======================= 11 23 42 GTCGCACCTCATATAGGTGCGTG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [325,94] Score: 0.18/0.18 # # Final direction: R [0.59,0.74 Confidence: LOW] >NC_020386 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 106134 32 100.0 35 TGGGTATACT ................................ AGCGAGGGCTATTAATAGTGTGCATACGAGTATAG 106201 32 100.0 30 ACGAGTATAG ................................ TTTTATATTTGGGGAGGCATAACAATAGCC 106263 32 100.0 32 AACAATAGCC ................................ ACGCCCGATACTGCACACCTAATAGGTACTTA 106327 32 100.0 37 TAGGTACTTA ................................ AAGAAATGGCAGGACAGGCTAGAACTAAATGACTGGC 106396 32 100.0 35 AATGACTGGC ................................ CTAAAAGTATCTATGAAGATGGGTATAGGGATAAT 106463 32 100.0 34 TAGGGATAAT ................................ AAGCTACTAATAGATGAATTGCCTCAGATAGATT 106529 32 100.0 35 CAGATAGATT ................................ AGGACACTACCGGTCTCTACCTCGTACCTGAACAG 106596 32 100.0 36 ACCTGAACAG ................................ TGCCAAATACTCCGCAGGGTTAAAGGAGATATTGCC 106664 32 100.0 35 AGATATTGCC ................................ TAACTAATGGTGGAGGTTATAATAAATGTTAGTAG 106731 32 100.0 36 ATGTTAGTAG ................................ GTTAGGTAATTATGCTAAAAAGGCGGAGCTATCCGC 106799 32 100.0 31 AGCTATCCGC ................................ GACCGAGTGTAATGGCAAGGTCAATCTCTAC 106862 32 100.0 32 CAATCTCTAC ................................ ACTCCTACGGTAATAACAGCAGTTAACACTGC 106926 32 100.0 33 TTAACACTGC ................................ TCAGATTATATTCTGCCTGCCTCTTAGCATTTA 106991 32 100.0 32 TTAGCATTTA ................................ CCCCGCATAGCCGATAACAGGCATATGTGCTG 107055 32 100.0 34 ATATGTGCTG ................................ GTTGCTATACTCTTTACTGCATTGCAGGCACTTC 107121 32 100.0 35 CAGGCACTTC ................................ TACATTAGGGGGGCATGGAATGAGCAGTCTTACCA 107188 32 100.0 35 AGTCTTACCA ................................ ACCAGAGAGCACAACAGGCAATAGGAGTATAGAAG 107255 32 100.0 32 AGTATAGAAG ................................ ATTGTATTAAGAGTTTAATTATTATAGGCGAT 107319 32 100.0 34 TATAGGCGAT ................................ ATTGAAGTTACAGGTATTGCTAAAGAACAAATAG 107385 32 100.0 35 GAACAAATAG ................................ GTTTACAGCGGAAAACCATATAGTATATCTCATAA 107452 32 100.0 36 TATCTCATAA ................................ CGATAATAAATACGATGATGAAGAAGATAAGCTAGT 107520 32 100.0 35 ATAAGCTAGT ................................ AAAAAACTGAATGCCCCTATCAATACAGTCACGGT 107587 32 100.0 34 CAGTCACGGT ................................ CTCTTTCCATTGCCCAGCTCCGCGTGGGTTGCAG 107653 32 100.0 35 TGGGTTGCAG ................................ CGTATAGCTCAAGTGCTTTGCGGATTGTGGGACAC 107720 32 100.0 33 TGTGGGACAC ................................ AAAACCCATATGTTATATCCCGTAGATGAGCCA 107785 32 100.0 36 AGATGAGCCA ................................ CCTCCGATAGGAAATACTTGTGGTCGGGATGCTGTT 107853 32 100.0 34 GGATGCTGTT ................................ ACACCCGATATTGACCAACTGATATAACTGGTGG 107919 32 100.0 34 TAACTGGTGG ................................ TGCTACGATGGGCTAGACGCATTATTTGACTATC 107985 32 100.0 34 TTTGACTATC ................................ TGCCACTTCCAGTTGAAGGCAAATCCCAGAGCAA 108051 32 100.0 32 CCCAGAGCAA ................................ AGGAGTACATATTTGTGGGCAAAGGGTCATAA 108115 32 100.0 33 AGGGTCATAA ................................ CAAATCATAATAATACCTAATGTTATATCTATA 108180 32 78.1 33 TATATCTATA -------......................... GCAAGCCTCAAAAGGGCACTCAAGGCATGAAGA 108245 32 100.0 33 GGCATGAAGA ................................ CCTCCTCGTATACTACTTCGCCCTTTCCACCAG 108310 32 100.0 36 TTTCCACCAG ................................ CCCTGGTACAGCCGGTATGAGCGTTGTTGATTCCGC 108378 32 100.0 37 TTGATTCCGC ................................ TCCAATTAAGTGCGTCTCGCACGGTCTTGCATTCCTT 108447 32 100.0 36 TGCATTCCTT ................................ ATTTCCAATAGACTAATAAATTTTTTCATTGACGTC 108515 32 100.0 37 CATTGACGTC ................................ GGACTCTAGTACCTCACAACACTAACAGGATGAGCCC 108584 32 100.0 35 GGATGAGCCC ................................ GACGATGGAGTATAATTATTAGGTGAGGATATACG 108651 32 100.0 34 AGGATATACG ................................ ACTCCTGATGTACACCAATATCTAAGCTATCCTT 108717 32 100.0 34 AGCTATCCTT ................................ TCGTACTCAGCGTATTCACAGCATAACGACACAA 108783 32 100.0 34 AACGACACAA ................................ TGCTACGATGGGCTAGACGCATTATTTGACTATC 108849 32 100.0 30 TTTGACTATC ................................ ACTTTAGCAACGTATAGCTCATCCAGATGA 108911 32 100.0 32 ATCCAGATGA ................................ TGACTCTCCCTATGCGTGCCATCTGGCTCTAA 108975 32 100.0 35 CTGGCTCTAA ................................ CCATAAAGACATAACCGGTGTAAAACGCGTAAATA 109042 32 100.0 35 CGCGTAAATA ................................ TTTACCTCTGGTAAAGAAAGTCTCTGCCGGAGTAC 109109 32 100.0 35 GCCGGAGTAC ................................ TTTAATTAATTGGCTGTCCCTGGCTACAATAACTA 109176 32 100.0 32 ACAATAACTA ................................ CTGCCTTCTTATGCCATTCTACAGCCTCTGGA 109240 32 100.0 34 AGCCTCTGGA ................................ GCTAGCGGGGGTTGTGACCTGCCATTTCTCCATG 109306 32 100.0 34 TTTCTCCATG ................................ TATATACTCGCTGAAACCAACTGAAATACACTGG 109372 32 100.0 34 AATACACTGG ................................ CGTACCGGATACCTGGCATTGCGAGGGTGTGGGC 109438 32 100.0 33 GGGTGTGGGC ................................ CCTCCTCGTATACTACTTCGCCCTTTCCACCAG 109503 32 100.0 35 TTTCCACCAG ................................ TGGTCACTGCGTTACCCATTGTCTTATATCTTTGT 109570 32 100.0 ATATCTTTGT ................................ TAGGTATAC ========== ====== ====== ====== ========== ================================ 53 32 34 GTCGCTCCCCGTGCGGGAGCGTGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [6,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.60,-5.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [128,72] Score: 0/0.18 # # Final direction: F [4.5,0.37 Confidence: HIGH] >NC_020386 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1318975 28 100.0 33 CCTCAACTTT ............................ TCTAGTAGCATGCATATGTATTCTATCTGCTAC 1319036 28 100.0 33 TATCTGCTAC ............................ CCTTGAGTAAGGCCTCTAATTTGCCTTAATGAC 1319097 28 100.0 33 CCTTAATGAC ............................ TTACACCGAGGGAAGTACATTTGCCATGACTGC 1319158 28 100.0 33 CCATGACTGC ............................ GGAGAAGGCGGTGGCGGCGGCGGCGGAGGTTAC 1319219 28 100.0 33 CGGAGGTTAC ............................ TCGGAACTAGGTTGGAAAAAGACCGATGCCGGC 1319280 28 100.0 33 CGATGCCGGC ............................ GGGACAGTACCAGGACCGATTGGCTCACCTACC 1319341 28 100.0 33 CTCACCTACC ............................ ATCAGCATAAGTTGATACACCAGAGTAATTATC 1319402 28 100.0 33 AGTAATTATC ............................ CTCTGGGTATCGGGTCTGAAGTAATATTAGCCC 1319463 28 100.0 33 ATATTAGCCC ............................ GTGCTACAGTGGTCAAACGATACTGCACATATC 1319524 28 100.0 33 TGCACATATC ............................ CGTACCCAGCAGTTTTCAGCTGTCCAGCCGGAC 1319585 28 100.0 33 CCAGCCGGAC ............................ ACTCTCTGGCTAGTTGTTCTATGATTGCATCAC 1319646 28 100.0 33 ATTGCATCAC ............................ TTTGTTCTTTGAAATATGCCGCATCGCTAGGGC 1319707 28 100.0 33 TCGCTAGGGC ............................ CTAGGAGTCAAGCATCGAGTAGCCAAAGAGGCC 1319768 28 100.0 33 CAAAGAGGCC ............................ AGACAGATGTGCGTATAAACGGGTGGTCATCTC 1319829 28 100.0 33 TGGTCATCTC ............................ TTCCACCAGAACGAAGCGTTTTTCATAACCACC 1319890 28 100.0 33 CATAACCACC ............................ TTTAGTCTTTTCGCTACCCATCCTGTAGTTCCA 1319951 28 100.0 33 TGTAGTTCCA ............................ GTCTCTGGACATATCACCGCTGGCCTTGATTTC 1320012 28 100.0 33 CCTTGATTTC ............................ GCAGTAGAGGATATCCCGTCTTGGCCCGCGTTC 1320073 28 100.0 33 GCCCGCGTTC ............................ GTGCATCTATTGCGTACCGCCAGTACAGGTGCC 1320134 28 100.0 34 TACAGGTGCC ............................ CCTGGTGAAACTGAAGAAGACAAGGAACTGACAC 1320196 28 100.0 34 GAACTGACAC ............................ GGTAGCTTCTATACGTTTGAACTCCCCATTAGAA 1320258 28 100.0 34 CCCATTAGAA ............................ GGCCAACCCTAACCCTTACTTTTCAGGGCAGGAC 1320320 28 100.0 33 AGGGCAGGAC ............................ ATTGGCTCATTGGCGTTGTGGTTAAAAAGCAAC 1320381 28 100.0 33 AAAAAGCAAC ............................ GTACAAGTTGCCACAATATGACATTTACCAGCT 1320442 28 100.0 33 TTTACCAGCT ............................ CCATCTTCTTCTGAATTACGTGCCCGGCTTATC 1320503 28 100.0 33 CCGGCTTATC ............................ ATGAGCCGTTTTTCTTTCCACGTAGCGGTATAC 1320564 28 100.0 33 AGCGGTATAC ............................ CAGGCGGGTAATACAGGGGATACTACAGATGGG 1320625 28 100.0 33 TACAGATGGG ............................ GTACAGGGGGGCTATCCGCATATTGAGGGTGGC 1320686 28 100.0 TGAGGGTGGC ............................ CCTAAAATAA ========== ====== ====== ====== ========== ============================ 29 28 33 GGTTCACCCCCACATGCGTGGGGAATAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-10.90,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [53.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [218,43] Score: 0.18/0.18 # # Final direction: F [0.55,0.27 Confidence: MEDIUM] >NC_020389 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================================== ====== 577476 38 100.0 34 NNNNNNNNNN A.C................G...........T...... AGAAGTCCAAGTAGAGAACGGTCTCCAAATCCAT 577548 38 100.0 35 NNNNNNNNNN ...................................... TCTATACGAAAATGAAATATTGACTGATGAAAGTA 577621 38 100.0 34 NNNNNNNNNN ...................................... GAAGATGAATATAATAATTTAGAACAGAGTATTA 577693 38 100.0 1 NNNNNNNNNN ...................................... NNNNNNNNNN ========== ====== ====== ====== ========== ====================================== 4 38 34 TGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.16%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.90,-3.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [143,36] Score: 0.18/0.18 # # Final direction: R [0.18,5.55 Confidence: HIGH] >NC_020389 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================================== ====== 577547 40 97.5 33 TCCAAATCCA .-...................................... TCTATACGAAAATGAAATATTGACTGATGAAAG 577620 40 100.0 32 CTGATGAAAG ........................................ GAAGATGAATATAATAATTTAGAACAGAGTAT 577692 40 100.0 AACAGAGTAT ........................................ TTATCAAACC ========== ====== ====== ====== ========== ======================================== 3 40 32 TATGTTTCAATCCTTGTTTTAATGGATCTTGCTCGCGAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.90,-3.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [58.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [214,35] Score: 0.18/0.18 # # Final direction: R [0.18,5.55 Confidence: HIGH] >NC_020411 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1024143 30 96.7 36 ATAGAAGATT .......................G...... TCTTCAAGTCGGCGTCACGCCGATATTCGAGGAGGA 1024209 30 96.7 39 TCGAGGAGGA .......................G...... TTAAACAATGATGGTGTAAAGTCAAACTCTTTAATCAAA 1024278 30 100.0 34 TTTAATCAAA .............................. AAATTAGGGAAATAATGAATCAAATATTAAAATA 1024342 30 100.0 37 TATTAAAATA .............................. TTCCTTCTTGTGTGTCGCTTTCTTGTGTGGTATCATT 1024409 30 96.7 37 TGGTATCATT ..............C............... ACATTGACATCAAAACTAATAAAGTGCCGATTATGGA 1024476 30 100.0 38 CGATTATGGA .............................. AAGATTAAAAATTGGGGCTTTGTGATAAAAAACAAACT 1024544 30 100.0 AAAACAAACT .............................. ACCAAAATGA ========== ====== ====== ====== ========== ============================== 7 30 36 GTTTCAATCCCCTATAGGTACAAACAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.10,-1.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-1] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [178,394] Score: 0.18/0.18 # # Final direction: R [0.27,5.05 Confidence: HIGH] >NC_020411 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1088952 29 100.0 39 TGATTTCTGG ............................. ACTTATGCAAAAGTATCTATTACATTAGAACTATCAAAC 1089020 29 100.0 40 ACTATCAAAC ............................. CCTGACAAAAATGAGAGCATAACACTTCCTACTTTTGCAA 1089089 29 100.0 36 ACTTTTGCAA ............................. TTATCACACGTGCAAGTGTTTTGTGTTTTGATATGA 1089154 29 100.0 35 TTTGATATGA ............................. TTGTCTCGTAACATTAAAATTCGTTGGAGTTGTAT 1089218 29 100.0 38 GGAGTTGTAT ............................. TCTTCAAAGCATACGTCAATAGTCTGCCAGCTTTGAGA 1089285 29 100.0 37 AGCTTTGAGA ............................. CTAAATTTTGAAAGTGTGGAGGATATGAAATCTTTTT 1089351 29 100.0 37 AAATCTTTTT ............................. ATTTCTTGAGATAATTTGATGATAGAAATATTTTTCT 1089417 29 100.0 36 ATATTTTTCT ............................. GTTAAAGAATCGTTTGAAAAACAGCAAATAGCAGAA 1089482 29 100.0 35 AATAGCAGAA ............................. ATCTCCTACAGCACTCCATTGATAATATGTTATTT 1089546 29 100.0 36 TATGTTATTT ............................. TTTGCAGTTAGCTTCTTCAATAGATTGATGTTTATA 1089611 29 100.0 36 GATGTTTATA ............................. TTACAAGTTTGTAAAACATCTCTTAAAAGCTTGTTT 1089676 29 100.0 38 AAGCTTGTTT ............................. TCGCACAGCTAAACAGCAACAGACTACTTGCTAAAATA 1089743 29 100.0 39 TGCTAAAATA ............................. AACTCAACATCATGCAAATCTGGGACTGCTTCTTTTTGC 1089811 29 100.0 40 TTCTTTTTGC ............................. CCAAAATATACTTGATAAAAACGATAAACAAGCACATTCG 1089880 29 100.0 37 AGCACATTCG ............................. TTATCTCATCTTTTTGTAGGTATCTCAATACTCCTTG 1089946 29 100.0 38 ATACTCCTTG ............................. TTTTTTAGCATCACTTTTTAACGATGCATTAGGTTTAA 1090013 29 100.0 36 TTAGGTTTAA ............................. TTGTTGGATAAGTGATTTTTACTTTGTACTTCATGG 1090078 29 100.0 37 TACTTCATGG ............................. GAAGCTGTCAATCTAAACACTACTTTGTAATTATTTG 1090144 29 100.0 36 TAATTATTTG ............................. TTTTGCATCAAGCGTATCAGGAACCAAAACTTTCGC 1090209 29 100.0 39 AAACTTTCGC ............................. GCACTTGCAAGTGCCACTTTGCGAGCCAATGCGAATAGA 1090277 29 100.0 36 TGCGAATAGA ............................. TTTAAAATGGCGGAAAGTTCTTGCGATCTGTCTAGT 1090342 29 100.0 37 TCTGTCTAGT ............................. ATTAGAGCTTTGTCTTTTTTCAAGAAAGACTCTATTC 1090408 29 100.0 36 GACTCTATTC ............................. TTCCTTGGCGCTCTTTCTACTCTTGATATCACAGAA 1090473 29 100.0 37 TATCACAGAA ............................. TTTAGAAGAGCTTCAAGATTAAGTTGCTTTTCCATCT 1090539 29 100.0 36 TTTTCCATCT ............................. AAATAGCAGCCCAGCTCCAACCCCACTGTCTTTCAG 1090604 29 100.0 36 TGTCTTTCAG ............................. ATGTCAACATGTATTGGTCAAAAGCTGAAGGAAGGC 1090669 29 100.0 37 GAAGGAAGGC ............................. TGAGCCATATTCTCAGAGATTGGCTGGTGTAATAGCA 1090735 29 100.0 36 TGTAATAGCA ............................. GACGGTGTGCGTGGTCTTACGGGGGATGTCATTTTA 1090800 29 100.0 38 TGTCATTTTA ............................. GACAAAGACTTGATTGAAGATTTGCACTCAGTCAAAAA 1090867 29 100.0 37 CAGTCAAAAA ............................. CGTTGAGTTGTGAGTATCACTTTGATATTTTGCATGA 1090933 29 100.0 36 TTTTGCATGA ............................. TATTCTATTTGCAATCTCTTCAGGCTTGAGGGCTCT 1090998 29 100.0 36 TGAGGGCTCT ............................. CTTAATCACTTCAAGCCGCAGATGTGTATCTCCTTG 1091063 29 100.0 36 TATCTCCTTG ............................. TAGAGCATTTGCACTCATAGATGCTCCAGTAGGACT 1091128 29 100.0 37 CAGTAGGACT ............................. TAAGTTTTTGCTTAAAACTTCTTCTAAAGAAGCTGCA 1091194 29 100.0 36 AGAAGCTGCA ............................. AACACAGACGCAAACCTTTTAAACGCAAACGGTGTA 1091259 29 100.0 42 AAACGGTGTA ............................. ACGTTTTTCACACGACCTAACGCATCTATGTGTTTCATCTGA 1091330 29 100.0 37 TTTCATCTGA ............................. ACAATTGCTGAAAAAGTGGACGATGACAAGAAGAAGA 1091396 29 100.0 36 AAGAAGAAGA ............................. GAAGTAAACAAAGCTCTGTTGCTTCTGGCGGCTTCT 1091461 29 100.0 36 GGCGGCTTCT ............................. CTACCAATCGCATCTACGCCTATCACCTTCCAACCA 1091526 29 100.0 37 CTTCCAACCA ............................. TTGATTACAAACATTATCAACGCACTTGTAAAACAAA 1091592 29 100.0 37 GTAAAACAAA ............................. GAGTAAGCGTTTTTTTAACAGAATGGAGGTCTTCTAT 1091658 29 100.0 37 GGTCTTCTAT ............................. TAGAGCATTTGCATTAATAGATGCTCCTGTGGGACTT 1091724 29 100.0 37 TGTGGGACTT ............................. GCGTTTGAAAATAGTATTTCTTTTGTGTAAAAATAGG 1091790 29 100.0 36 TAAAAATAGG ............................. TTTAAAATGGCGGAAAGTTCTTGCGATCTGTCTAGT 1091855 29 100.0 37 TCTGTCTAGT ............................. ATTAGAGCTTTGTCTTTTTTCAAGAAAGACTCTATTC 1091921 29 100.0 41 GACTCTATTC ............................. ATATGATACTTTTAGCACTTGCCCGAGCCAGTAGCTAATGG 1091991 29 100.0 36 TAGCTAATGG ............................. ATTACTGAAAAATTGCAACAATTATTAAACTACATG 1092056 29 100.0 39 AAACTACATG ............................. CTTCTAAGGTTTGATGTAGTCTTTCAATCATTTGAGGCA 1092124 29 100.0 36 ATTTGAGGCA ............................. AGCATCGGGGCGTTTATAAATACCGATGCAAAAACT 1092189 29 100.0 38 TGCAAAAACT ............................. ACAACAAGCGTTTGATAAACGTTAGCGGGAGTTGTTGA 1092256 29 100.0 GAGTTGTTGA ............................. TTTCATTCTA ========== ====== ====== ====== ========== ============================= 51 29 37 GTTTCTAATTAACCGTGTGGAGTTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.07%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.70,-0.40] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [236,4] Score: 0.18/0.18 # # Final direction: F [0.18,0 Confidence: MEDIUM] >NC_020411 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 591447 28 100.0 38 GTGATTTCTG ............................ TAACAAAAGCAGAATCATAGGGCTTCCAGCGAACCCTG 591513 28 100.0 38 GCGAACCCTG ............................ TATAAGTATGAAGCGTATGAATATATTATACCTGATAC 591579 28 100.0 39 TACCTGATAC ............................ TAGTCTCTTCCTCTTGTTGTTTGAAGCTGATTGAAGCCA 591646 28 100.0 38 ATTGAAGCCA ............................ TGAATACAGAGTTTGGGTTGCTAAGGATTTGCTTTCGG 591712 28 100.0 38 TTGCTTTCGG ............................ GTATTGACCTGGATTCTTTTCAAATGTGGTGAGTATGG 591778 28 100.0 38 GTGAGTATGG ............................ GTGCTTTCTTGGATCCAATGTTACTTCAAAATTAAATT 591844 28 100.0 37 AAATTAAATT ............................ GTATAGTAATTCTTCAGAGTTTGAAATTTTCTCTGAC 591909 28 100.0 38 TTTCTCTGAC ............................ GTTCAATTTTTGGTGTAGTTACTGATGCTTTAAACTTT 591975 28 100.0 38 TTTAAACTTT ............................ GTCGCTTTGTGATTTTTGTATTCCTGCGATATCTCCAT 592041 28 100.0 37 ATATCTCCAT ............................ GGATTTTGGATCTGATGTATGGCAATTTATAGATCAG 592106 28 100.0 TATAGATCAG ............................ TTATATATACC ========== ====== ====== ====== ========== ============================ 11 28 37 GTTTCATCTGAACCGTGTGGGATATAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.71%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2003,295] Score: 0.18/0.18 # # Final direction: F [0.55,0.27 Confidence: MEDIUM] >NC_020411 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 930895 29 100.0 36 ACGTTTTCTT ............................. TGATTATGAGTTATTGACAAATGATACGGTACAATG 930960 29 100.0 37 CGGTACAATG ............................. TTTTGGTGTGTTTTATAAAGCCAACAAGAACGATAAA 931026 29 100.0 39 GAACGATAAA ............................. TGTGTAAGAGTGTAGGATAATGATGCCCAATCATATGAT 931094 29 96.6 37 ATCATATGAT ............A................ GAATTGAAAAAGGTACCACACAAGTGGTACCTCATTG 931160 29 100.0 36 TACCTCATTG ............................. AAGAGGATAACTCTTTCCAGCAATCCACACTACCGT 931225 29 100.0 37 ACACTACCGT ............................. TCTTACCTACTATTTGACCTTCATACATAATAAAGCG 931291 29 100.0 TAATAAAGCG ............................. AACAAGCCTT ========== ====== ====== ====== ========== ============================= 7 29 37 CTTCTTAACCCACACGGTTCAGATGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.17%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.10,-3.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [50,520] Score: 0.18/0.18 # # Final direction: F [0.68,0.55 Confidence: LOW] >NC_020411 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 928156 29 96.6 36 CGTTTTCTTT -............................ TATTATTACACACCTTCCACAACACATTTAAAGCAA 928221 29 100.0 36 TTTAAAGCAA ............................. AAATTTCTTTCTCTTTGGCTTCAATCTTTCGTAAAG 928286 29 100.0 37 TTTCGTAAAG ............................. TGTCCATCCCACGTTAAAGATTTAGCGTAGTAGATAG 928352 29 100.0 37 TAGTAGATAG ............................. AGTCCAATTTATAAAGTCTTGCACTGCTTGATTGACT 928418 29 100.0 38 TTGATTGACT ............................. ACTTTGTTGAAAGGAACATTAACAATGTAAAAGAAGTA 928485 29 100.0 34 AAAAGAAGTA ............................. TCAGTCCATCATTGTCTGTGACGCTAAAATGTGT 928548 29 100.0 37 TAAAATGTGT ............................. TGTGTTTAGTTTGACAGGGTCTAATATGCCAAGCCAT 928614 29 100.0 35 GCCAAGCCAT ............................. TTGCGAGAAAAGAAAATGAAGAAAATCTTAAAAGG 928678 29 100.0 37 TCTTAAAAGG ............................. CGTTGTAAGCAAGTAGTTCAATCGCAGCGTCCATGAT 928744 29 100.0 37 CGTCCATGAT ............................. AGCTGTGGATTAGGATTTTCAAACTCTTAGAACAAGC 928810 29 100.0 36 TAGAACAAGC ............................. AGAATCATTAGGATTGTTTGCATTTGATATACAAGA 928875 29 100.0 37 ATATACAAGA ............................. ACACTTATACACTCTACACCAAAGCATAAACTCTGGA 928941 29 100.0 36 AAACTCTGGA ............................. CAAGTTTTGAATTTCAAACACCATTCCCTAATTTAA 929006 29 100.0 42 CCTAATTTAA ............................. TATGATTTGTATCAAGAAATAGAGTATTTTTTTATGATATGG 929077 29 100.0 36 TATGATATGG ............................. ATATCATTTTTATAGATTAGAGTCAATATTGTAAAA 929142 29 100.0 38 TATTGTAAAA ............................. GCGATATTAAAAAATGAAGATTTCAAGCCTGATAGAGG 929209 29 100.0 35 CTGATAGAGG ............................. CTTCCAAAGATACAGTTTAAATTTGTAGATGCCAA 929273 29 100.0 TAGATGCCAA ............................. CAGAAATCAC ========== ====== ====== ====== ========== ============================= 18 29 36 CTTCTTAACCCACACGGTTCAGATGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.17%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.10,-3.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [167,587] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_020419 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 343494 36 97.2 30 TCAAAGGTGT -................................... TTTGGTTTGTTGTTATTGACATCTTGTTCT 343560 36 100.0 30 ATCTTGTTCT .................................... ATAATAGCGATAGCAGTGATATTCTTGATG 343626 36 100.0 33 ATTCTTGATG .................................... CAATATTTTCAAGCCCAGTGCTGTCTCCAAGTT 343695 36 88.9 30 TCTCCAAGTT ----................................ ATTACCATTAGCATCTAATCCAAATGATTT 343761 36 100.0 30 CAAATGATTT .................................... ACCGTATGCTTCTATAGTGTTTAATCTACA 343827 36 100.0 31 TTAATCTACA .................................... TGTATTCAGCTTCAATGGCGATTTTTGGTTC 343894 36 100.0 30 TTTTTGGTTC .................................... TTACGAACCGATTAAACAAACATGGGACGC 343960 36 100.0 30 CATGGGACGC .................................... CCAGAGATACGACGAACGTCACGGATTGAA 344026 36 100.0 30 ACGGATTGAA .................................... CATTATATCAGCGATTGAGAGCATAAAACC 344092 36 100.0 30 GCATAAAACC .................................... TTGATTCGCTGAGAGCCTTTACGGCCTGTG 344158 36 100.0 30 ACGGCCTGTG .................................... CAAAGTAAATACCATACGGGAACCACGTAG 344224 36 100.0 30 AACCACGTAG .................................... GTACTAAAGGGTGCTACTACAGTAAAGCCC 344290 36 100.0 30 AGTAAAGCCC .................................... CAATTGTACGGAATATATTAACTTTCTTAC 344356 36 100.0 30 ACTTTCTTAC .................................... GTAAGGTGCATAGCGTACTCCGGTAGCTGG 344422 36 100.0 30 CGGTAGCTGG .................................... TGGATATCATATTACCTGCATACGCTGATA 344488 36 100.0 30 TACGCTGATA .................................... TAACCAAAGCAGGCATATCGTATACATTGG 344554 36 100.0 30 TATACATTGG .................................... ACATTGTTAAAAAATATAGAGAGAATTACG 344620 36 100.0 30 GAGAATTACG .................................... CAGGGATTATTACGTCCTCGCCTGCTTTTA 344686 36 100.0 30 CCTGCTTTTA .................................... GCAAAGTAACTTAATCTAAACATTTTTACA 344752 36 100.0 30 CATTTTTACA .................................... ATGACGAATATAAAACTATGGCTGATATAG 344818 36 100.0 30 GCTGATATAG .................................... GAATTCAAGTACGACGATATCAGAGATGGT 344884 36 100.0 30 CAGAGATGGT .................................... CATGCAAAGCACTTTTATCACACTTACGTA 344950 36 100.0 CACTTACGTA .................................... AGACAAACGC ========== ====== ====== ====== ========== ==================================== 23 36 30 GTTATAGTTTCCTTCCTCTCTCAGATGTGCTATAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.89%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [50,64] Score: 0/0.18 # # Final direction: R [0,0.41 Confidence: MEDIUM] >NC_020419 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 331298 32 100.0 33 NNNNNNNNNN ................................ TCCGTTACTGCGTAATAGCGTATATCAGCACCC 331363 32 100.0 33 NNNNNNNNNN ................................ TGGATACCGCCACCACCGCCGCCACCTCCGCCG 331428 32 100.0 34 NNNNNNNNNN ................................ CCACAACACACGAAGTTATTGACAACAATATGTA 331494 32 100.0 34 NNNNNNNNNN ................................ TGCGGAGTTAATTCCATAGTACCTAAAGCAGTAT 331560 32 100.0 34 NNNNNNNNNN ................................ CCATTCGCGCCCCACAAAAAACTAGCTTTGCTAG 331626 32 100.0 33 NNNNNNNNNN ................................ TCTAAACCATTGTAATGATATATATCCATTTCT 331691 32 100.0 33 NNNNNNNNNN ................................ TTCCACGCGTAACTATTTACAGCGATAAACAAA 331756 32 100.0 34 NNNNNNNNNN ................................ TGCGAGTAAATGGGACAAAAAAGAAAGCCCTAAA 331822 32 100.0 35 NNNNNNNNNN ................................ TAAAAATGGAAAAGATTTGCTGTGTTATGAAAAAG 331889 32 100.0 34 NNNNNNNNNN ................................ CGATAACAGCCCAGAAAAATCAGGACTGGTAAAA 331955 32 100.0 35 NNNNNNNNNN ................................ CCAACTACTTATATTCCTCCACTGTGTTCCTGAAA 332022 32 100.0 34 NNNNNNNNNN ................................ CCTCTAATTCCAACTGACATTCGTATGCATTTCC 332088 32 100.0 32 NNNNNNNNNN ................................ TGGTATAAGATATTTTTTTTTCTGACCTTCAA 332152 32 100.0 33 NNNNNNNNNN ................................ TGTTTGCTGATTTATCTAAATCGTGGCGAGTAG 332217 32 100.0 33 NNNNNNNNNN ................................ CTAATGCGAGGTAAGGATTTAAGCCTGCTTCTT 332282 32 100.0 35 NNNNNNNNNN ................................ TCTATATATCTGCCACCTGCACGAGCCGCTCTCTC 332349 32 100.0 33 NNNNNNNNNN ................................ AAAAGTGATTGTTTGTTTGCCTGCTATCACTTC 332414 32 100.0 35 NNNNNNNNNN ................................ CTCAATACGTCCTCAAGCAGGTTCCTCTCTCCCGA 332481 32 100.0 32 NNNNNNNNNN ................................ TGTGCTTAAGTTTTGTATTACCATATATTCTG 332545 32 100.0 35 NNNNNNNNNN ................................ TGCTGTCATCCACCGCAAAAAGGTTGCACAGTGCG 332612 32 100.0 33 NNNNNNNNNN ................................ CTTGCAAGTGCAGCATTTTGCTCCTCAAGCTCT 332677 32 100.0 34 NNNNNNNNNN ................................ CTGCAAAGCTGTAAATACTGAAGCAAAATGGGCA 332743 32 100.0 35 NNNNNNNNNN ................................ TACAGCCGTGCTTCCAGTGCCAGTACCAACAACAA 332810 32 100.0 33 NNNNNNNNNN ................................ TACCACCAACACATATTAGCACCGCTAGTATAA 332875 32 100.0 34 NNNNNNNNNN ................................ GCTGCACCACATCCGTTATAATCGTAAATTGTTG 332941 32 100.0 32 NNNNNNNNNN ................................ CCGCCCGCCAGTAAACTTACGGTACAATGCCA 333005 32 100.0 33 NNNNNNNNNN ................................ AGAACAGCCAGCAGAGAGATGTAGAGACTATGC 333070 32 100.0 33 NNNNNNNNNN ................................ TTGTACGTATGTTGCCTAAAAGGGTGTGAAGCG 333135 32 100.0 33 NNNNNNNNNN ................................ TAATCCAAATGGTGATAACGGTGGCGATAATAA 333200 32 100.0 33 NNNNNNNNNN ................................ TGGCGATACCAGCGGCAATAAGTACTCTGCGAA 333265 32 100.0 34 NNNNNNNNNN ................................ TTGAATTTTAATTGTTTCAGGAGGTGCTAACTCT 333331 32 100.0 33 NNNNNNNNNN ................................ CTTCTAAACCTGTAACAAATTCTAACGCCTCAT 333396 32 100.0 33 NNNNNNNNNN ................................ TTGCATTCTGCTCGCTGCAAATTCATAGGCTGG 333461 32 100.0 34 NNNNNNNNNN ................................ ATAATTGTGCTTATCATTTTATTCCCCTTTAGAA 333527 32 100.0 34 NNNNNNNNNN ................................ GTCAAAAACCAGATTATTTAATATGCTTGAGTTT 333593 32 100.0 34 NNNNNNNNNN ................................ CTTAAATTTCGCATACGATAAATCATTATCAATC 333659 32 100.0 34 NNNNNNNNNN ................................ TGTGGCTGACCAAGAGCGGATAGCGAAAGCTCAA 333725 32 100.0 35 NNNNNNNNNN ................................ GCTTCCAAAACTGCTAAATCTTTTTTCATTCGGCA 333792 32 100.0 33 NNNNNNNNNN ................................ TGCAGGGGAGTATCCTGTTGAGGAAACGCTGGT 333857 32 100.0 35 NNNNNNNNNN ................................ TCGCAGAAAATCTTGCTCAAATCTAATACGGTATG 333924 32 100.0 33 NNNNNNNNNN ................................ CTGCCAGTCCGCACATTGCACGTTAATTATACT 333989 32 100.0 33 NNNNNNNNNN ................................ TTGTTTTGCTTGAAATCTAGCCAAAATGCCTGA 334054 32 100.0 33 NNNNNNNNNN ................................ CAAATCCGCGCCAGTTGGCGCATAAGATTTTTT 334119 32 100.0 35 NNNNNNNNNN ................................ CCGCAGAACAAAAAGAACTTGACGCAGAAATTGAC 334186 32 100.0 34 NNNNNNNNNN ................................ CAGCGTGGACGCAAGTGCTATAGACGGTAGTTCA 334252 32 100.0 33 NNNNNNNNNN ................................ TAAATAGGTTATACTGGTATCTATTTTTTTTAG 334317 32 100.0 34 NNNNNNNNNN ................................ CACTCTTGGCAAAATTTGTTTTCCTTGAGAAATA 334383 32 100.0 34 NNNNNNNNNN ................................ TTTACATCTAACCAGCTGGCTTATTATGACATAC 334449 32 100.0 34 NNNNNNNNNN ................................ TTGAGAGAGAAGTCCATTTTTGTATATATCCTTT 334515 32 100.0 34 NNNNNNNNNN ................................ TTGTTCTCCTTCGGGCGGTTCTGGCGCTGCGTAA 334581 32 100.0 33 NNNNNNNNNN ................................ ATCCTCGCGGGCATAGCTCTCGCAGGTGATTTC 334646 32 100.0 33 NNNNNNNNNN ................................ TTCTCTTGAAGCCCCATACTGCCACGCTGGCAG 334711 32 100.0 34 NNNNNNNNNN ................................ CAAACTGGCAATCGCCAGAAACTTTTCTGCAATT 334777 32 100.0 34 NNNNNNNNNN ................................ TTTACGGCGTTGCTCTGTTATCCCAAACATATCC 334843 32 100.0 34 NNNNNNNNNN ................................ ATTCACAGCTGTGTAATTACCATAATATAGCCTG 334909 32 100.0 34 NNNNNNNNNN ................................ AGCCCCTCTGGGCTGTTATAGTGTTCGGCAACCG 334975 32 100.0 33 NNNNNNNNNN ................................ AAGTATTTATCACTACAATCATATTTTTATTAA 335040 32 100.0 33 NNNNNNNNNN ................................ CCACAAATCTTGATATGGAGTTTTCAGCAACCA 335105 32 100.0 34 NNNNNNNNNN ................................ TTAGAACTCCCCGTTTTAACTTCGCCCCCATCTA 335171 32 100.0 35 NNNNNNNNNN ................................ CGCCAGTTCTGGTGTCCACTCATCGTGCTGGTCTG 335238 32 100.0 32 NNNNNNNNNN ................................ TCGCTATTAAACGCTTGTTGTGGCAGAGTATG 335302 32 100.0 33 NNNNNNNNNN ................................ CAGCAACATTAAGTGTTCCGCCACTGCTTCCTC 335367 32 100.0 34 NNNNNNNNNN ................................ AAGGGCTTGACATATTTACAAATATATATTATAA 335433 32 100.0 34 NNNNNNNNNN ................................ CGCCCTGAATATCCCGTGCTGGCTTTTAGGTGAT 335499 32 100.0 34 NNNNNNNNNN ................................ ATATCGCCTTCGTTATAGGTGCTATCAACATCCC 335565 32 100.0 34 NNNNNNNNNN ................................ TGTACACCAGCGAGCTTAATGACAGCAATGAACG 335631 32 100.0 35 NNNNNNNNNN ................................ AGGGTATGAATGCTTACGGAAGCTTATCTGCTGCG 335698 32 100.0 35 NNNNNNNNNN ................................ CGTACTCTCTAACTCATTGGCTTCCATCATTTATA 335765 32 100.0 35 NNNNNNNNNN ................................ CATTTCTGCCGCTTCACTTCTGCCCTTTACAGGCA 335832 32 100.0 35 NNNNNNNNNN ................................ TTTTTAGTGTAATACTTGCCTCAAGCTCAATAAAA 335899 32 100.0 33 NNNNNNNNNN ................................ AGCTCTAAATATCCCGTGCTGGCTTTTAGGTGA 335964 32 100.0 33 NNNNNNNNNN ................................ AAGAGATATTAGATATATTAAATCTGCCTCATA 336029 32 100.0 35 NNNNNNNNNN ................................ TATAGAAGGTTTAATGTGTACGCTTGAAATGTTTG 336096 32 100.0 34 NNNNNNNNNN ................................ GTAGAAAAAATCGTTTGAGCAGAATTACCAGCAA 336162 32 100.0 34 NNNNNNNNNN ................................ GTCAACAGCAAATAAGTTGCACAATGCGTATTTT 336228 32 100.0 33 NNNNNNNNNN ................................ CATATATCCTCTCTGTGCCGATTGGCACTTTAT 336293 32 100.0 34 NNNNNNNNNN ................................ TTGCAGACCTTGTTTCAGCTGCGGGCGGTGATGA 336359 32 100.0 35 NNNNNNNNNN ................................ CTAAAAACGGCAACATCCTGCTCCATTTCGTTCCT 336426 32 100.0 34 NNNNNNNNNN ................................ ATTTATTTTCAGGTGCTTGTGCCTCTGGAACCTT 336492 32 100.0 35 NNNNNNNNNN ................................ TAGTGTCCCGCTCTGGAGTATAACCTTGATTACCG 336559 32 100.0 35 NNNNNNNNNN ................................ ACCTCATCAAAACTAATCCAAAAAACAAAGGGACG 336626 32 100.0 34 NNNNNNNNNN ................................ CAGTTTGGGGTAAGAGGCGTGCTGATTAAAACAC 336692 32 100.0 35 NNNNNNNNNN ................................ TACAGGGTTCATTTTAATCTTTTTCATTCCTGAAG 336759 32 100.0 34 NNNNNNNNNN ................................ TTGTCTGCGTTGCTGATATAATCTCTCTGCTTCA 336825 32 100.0 34 NNNNNNNNNN ................................ CTCTTAACCGTTACATTTATATCAATGACACTTA 336891 32 100.0 35 NNNNNNNNNN ................................ CCAAAATCTGCTTTCCAGCATAGCCTCTATATAAG 336958 32 100.0 34 NNNNNNNNNN ................................ TAAATTTGAGGAGCAGTGGCGGAGAAAAGCCAGA 337024 32 100.0 34 NNNNNNNNNN ................................ TGCATATCGGCTTTATTTTGGTTATCTTTATTCG 337090 32 100.0 33 NNNNNNNNNN ................................ CCGCCCACTACGGCTGGAAGCTTGTCTATTTCA 337155 32 100.0 35 NNNNNNNNNN ................................ GCAAAAGAAGGAGTAAATGATATAGTCTGTTTTCC 337222 32 100.0 33 NNNNNNNNNN ................................ AAGTTCAAGCTCTAGCAGTTCCAGTAGCAGTAG 337287 32 100.0 33 NNNNNNNNNN ................................ AGTTCCGACAGGAGAAAAGAGTTCAACATTGTA 337352 32 100.0 35 NNNNNNNNNN ................................ CACTCTCCCGCTGCACCTCCTGTGTTGTACATCCT 337419 32 100.0 33 NNNNNNNNNN ................................ TAAAGGCGGATTTAGAGCAGGATTGCGATTGAA 337484 32 100.0 34 NNNNNNNNNN ................................ TTTATCCTCAAAATATATACGTCCGCCTTGTCCG 337550 32 100.0 35 NNNNNNNNNN ................................ GGCGGACTGGACGCGAAACAAAAAGCGGCGTTGGT 337617 32 100.0 34 NNNNNNNNNN ................................ TCTTGCAAGCGTGTTGGCTGGCGCCGTGACATCA 337683 32 100.0 34 NNNNNNNNNN ................................ TGCTTTCGCGGAACACAATTGCGTGAGATATACT 337749 32 100.0 33 NNNNNNNNNN ................................ TGAGGCTAATGACAGTACAGGTACAAATCCTAT 337814 32 100.0 33 NNNNNNNNNN ................................ CCATATTTTCAGCTTTTGTTTGCTCCGCCTGTG 337879 32 100.0 35 NNNNNNNNNN ................................ ATTGCAATCTCGTAATCTAACCTCATTTTTTCAGC 337946 32 100.0 34 NNNNNNNNNN ................................ TGCTTTCGCGGAACACAATTGCGTGAGATATACT 338012 32 100.0 34 NNNNNNNNNN ................................ TTCGCAGAAACGTTCAGTATCAGCGAAATTATCC 338078 32 100.0 35 NNNNNNNNNN ................................ GCAAAAGAAGGAGTAAATGATATAGTCTGTTTTCC 338145 32 100.0 34 NNNNNNNNNN ................................ AGTCCATCCAATTTCGTTTGATGGCAGTGGTTTA 338211 32 100.0 34 NNNNNNNNNN ................................ TGTGCTAAAAGGTGTTAAGACTGCAGCTGGCGGT 338277 32 100.0 34 NNNNNNNNNN ................................ TTGCAGACCTTGTTTCAGCTGCGGGCGGTGATGA 338343 32 100.0 33 NNNNNNNNNN ................................ CGAAGGATGTTCCCAATGAGTAAAGATAATAAA 338408 32 100.0 34 NNNNNNNNNN ................................ AGGGAATAATGTCTCAACTTGCTTCAGGATTAGG 338474 32 100.0 33 NNNNNNNNNN ................................ TGTGGCATAGATACTATCAAGAGCTGTAATTAA 338539 32 100.0 33 NNNNNNNNNN ................................ GCCGCCTAAAGAAAGAGCCATACAATTAGCTTT 338604 32 100.0 33 NNNNNNNNNN ................................ TAGTTAATGTAGCTACGTTATTAGCCATTGTAA 338669 32 100.0 1 NNNNNNNNNN ................................ NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 113 32 33 GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [5,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.50,-6.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [177,429] Score: 0.18/0.18 # # Final direction: F [4.87,0.55 Confidence: HIGH] >NC_020449 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 992831 37 100.0 37 TGTATGTGCT ..................................... ATAAAGGTTCATCTTCATCAGCAGTGTCAGAATCAGA 992905 37 100.0 42 CAGAATCAGA ..................................... TTAAGCTACATCAGGAGGAAGCATTCCCTGATGTAGGTTATG 992984 37 100.0 39 GTAGGTTATG ..................................... ATTCCGGGCTTTTTCCGAGTCAGGAACAATATTATCTGC 993060 37 100.0 38 TATTATCTGC ..................................... TAAAGTCCCAGTCTGAAGATAATATTGTGTTTATAGCC 993135 37 100.0 36 GTTTATAGCC ..................................... GTAAATACTAATCCTATCAGTTTCATTTTTCCTCCT 993208 37 100.0 36 TTTTCCTCCT ..................................... AGGAATAGTCATTTTTCCACGAAGCACTACTGCGAT 993281 37 100.0 42 CTACTGCGAT ..................................... AAAAAAGCACTCCAAACAGCTTGGAGAGGTTTTGTTTTGAGA 993360 37 100.0 37 TGTTTTGAGA ..................................... TTTAGATTGTGCATTGAATCGAAGGCACCATCCTTAT 993434 37 100.0 43 CCATCCTTAT ..................................... TATCCCCAATTATCTTTGTTTTCACCAAAGATTCTGGAAATTA 993514 37 100.0 35 CTGGAAATTA ..................................... GTGAACGCTTTTTTGGTCAAGCAAGGTGTTTTTAA 993586 37 100.0 42 GTGTTTTTAA ..................................... TTTAAAGCTTTAAACACTTTGAATTTGTTAGCTAAATCCATT 993665 37 100.0 39 TAAATCCATT ..................................... TTTTTGTTGTAGAAATATTCGAAAGCTTCATAGTCTTCC 993741 37 100.0 41 ATAGTCTTCC ..................................... GACCACGAATTGCCCCGATATTTCGTTTTAGCAATACGATC 993819 37 100.0 40 CAATACGATC ..................................... TCAAAATATGGACAAGAACGATAATCGTGATAACAGATAT 993896 37 100.0 40 TAACAGATAT ..................................... TATATTTCGGAGATTGACTTCTTATCTACCTCGTATTTTA 993973 37 100.0 43 TCGTATTTTA ..................................... AAACACGATGAACAATACCATCCCGATGGCGGTTAATATTTGT 994053 37 100.0 37 TAATATTTGT ..................................... ATGGAAGTGAAGCCTATGGGTTCATAGATTGCCCAAT 994127 37 100.0 40 ATTGCCCAAT ..................................... ATTAGGATACATAGCGGAAAAAACTGGCACAGGATCTGCG 994204 37 100.0 42 AGGATCTGCG ..................................... CAATTGAGGCTCCTCATCCCGGTTCATGGTTCTGTACAATCT 994283 37 100.0 42 TGTACAATCT ..................................... GATCGCTCTGAACCCAGATTTCAGCCTTCACATATGACCCAT 994362 37 100.0 37 TATGACCCAT ..................................... GATCGCTCTGAACCCAGATTTCAGCCTTCACATATGA 994436 37 100.0 41 TCACATATGA ..................................... CGTCTTCCTGGTAATACGAGATCACCAGGAAGGGCTTTCCT 994514 37 100.0 41 GGGCTTTCCT ..................................... AATTGACTCAGCAACAAGCTCGCCATTGGCTTTGGTTGCTC 994592 37 100.0 40 TTGGTTGCTC ..................................... ACTTCTGCCAAATCTTTAGCAGAGCCAAAAAGCGTCCTAT 994669 37 100.0 38 AGCGTCCTAT ..................................... AAGATCTTTGGGGTCATCTCTTGCTCAATGTCAAAATT 994744 37 100.0 39 TGTCAAAATT ..................................... TTCGAACTGGGAAATAACCGTTACTTCTAATAAGTTCAT 994820 37 100.0 40 ATAAGTTCAT ..................................... AATGACCTCAGTTTTTCTTGTTCAGGAAATACCCACTTGA 994897 37 100.0 38 ACCCACTTGA ..................................... AAGATCTTTGGGGTCATCTCTTGCTCAATGTCAAAATT 994972 37 100.0 39 TGTCAAAATT ..................................... TTCGAACTGGGAAATAACCGTTACTTCTAATAAGTTCAT 995048 37 100.0 40 ATAAGTTCAT ..................................... AATGACCTCAGTTTTTCTTGTTCAGGAAATACCCACTTGA 995125 37 100.0 39 ACCCACTTGA ..................................... TTGGTTCACGGCTGCTTCGTACCATTGAGCTTGTGCCAT 995201 37 100.0 38 CTTGTGCCAT ..................................... ATTAATCTTCCTTCCAGATATCGCACTGGAAGGTTGGG 995276 37 100.0 39 GAAGGTTGGG ..................................... TCTCTGTATCTCTTATACAGAGAATTCCCGAATCATCAT 995352 37 100.0 37 GAATCATCAT ..................................... TCAACCTATTTTCTGTACCTGTTGAATGAGCACATTC 995426 37 100.0 39 GAGCACATTC ..................................... ATGATTATGATTAACAAAACTACGGTTATGAATAGATAC 995502 37 100.0 42 GAATAGATAC ..................................... TTAAAAATTGACCGTTAATACACGCTTTTAAGCTAACGCTGA 995581 37 100.0 39 CTAACGCTGA ..................................... TCAACTAAACCACAAACGAATGCTGGAAACGCCCATCCT 995657 37 100.0 43 CGCCCATCCT ..................................... ACTTACCCAAATTTCAGCTCTAACAAATGAACCAAATTTTGGA 995737 37 100.0 38 AAATTTTGGA ..................................... ATTCTGTACCGAAGAAATACTACTTCTCTTCACAGCGA 995812 37 97.3 41 TTCACAGCGA .................................A... TCAATTACTTTTTTTTCAACTTCTTTCTTTGTCATTTTTTG 995890 37 97.3 42 TCATTTTTTG .................................A... TATTGATAGATTTATCCCTCAATGCTTGAAGGAATTTTTCTC 995969 37 97.3 40 AATTTTTCTC .................................A... CATCCACAAGCCATTTACATAGCCACATACGAATGCTGGA 996046 37 97.3 38 GAATGCTGGA .................................A... CACATCAACTTCATAACGAAGCTAATGCGTTCGTTATA 996121 37 100.0 40 GTTCGTTATA ..................................... CCTCTCTTCTTCTTCACCTCACACCGGGGGGAGACATTCC 996198 37 100.0 39 GAGACATTCC ..................................... GGAAATGGCTTCTGCTAATACAGAGGCAGACCCGAAAAG 996274 37 100.0 41 ACCCGAAAAG ..................................... TGAACTGGAAAATATCCAAAAGATCTAATGATCCCTTCTGC 996352 37 100.0 38 TCCCTTCTGC ..................................... TTGGCTTCTTCAATAGTGATTGCCCGCATTTCGGAATT 996427 37 100.0 35 TTTCGGAATT ..................................... ATTACTTTTTGGTTTTTTCTGTAAATCGCGACATA 996499 37 100.0 38 TCGCGACATA ..................................... CTATTCGTACCCTATCATCACACGGATCATACCGGAAG 996574 37 100.0 40 ATACCGGAAG ..................................... TCTTTTCTGAATTATACAGGTTTTTCCATCCCCTAAATGG 996651 37 100.0 39 CCCTAAATGG ..................................... TTAAACTGTTGTTTCAGTGGAACTAATCCACTGGCCTTT 996727 37 97.3 41 ACTGGCCTTT .................................A... AATATTCTTCTTATTCGGGTTAATTTTTCAATTACTTTTTC 996805 37 97.3 38 TTACTTTTTC .................................A... CCAATTCTGCGCCTTTTCGCTCACCGCCCAAAATCCAT 996880 37 97.3 43 CAAAATCCAT .................................A... TACCACAAGTTCCATAATGATGTACTCCTCCCTCTTCAGCCCA 996960 37 97.3 36 CTTCAGCCCA .................................A... AATAGATAAGGTTTCCCATTTTCAGACATAATGGGA 997033 37 97.3 46 CATAATGGGA .................................A... GCATTTGAAAGGCAAGGGTCAGAAAAACGGAGCCATTGTCGGTTTG 997116 37 97.3 38 TGTCGGTTTG .................................A... GAGTGCTGTGGAGATTGTCCGGAATAATCTCAACCAAT 997191 37 97.3 40 CTCAACCAAT .................................A... TAAAAGAAACGGTTTCTTTCCAGCAGCCATATCTGGCATC 997268 37 97.3 ATCTGGCATC .................................A... GAAAACACTG ========== ====== ====== ====== ========== ===================================== 59 37 39 ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:59.46%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.90,-3.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [66.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [13,2626] Score: 0.18/0.18 # # Final direction: F [5.14,0.18 Confidence: HIGH] >NC_020449 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================================== ====== 1486615 38 100.0 36 CCTAAATCTT ...................................... CTCTCGCTTAACCAAGTTGCCCAGCCAGTAATCATC 1486689 38 100.0 35 AGTAATCATC ...................................... TGCTGAGAGCAGATACCTCTTCGTATTTGCTCTTG 1486762 38 100.0 37 TTTGCTCTTG ...................................... GTTGTGGTGTAATAAGTCGTTATTTATTGATGTATAG 1486837 38 100.0 36 TGATGTATAG ...................................... CCCGCATTTATCATTTTAGTAAGAATGAATTGCAAA 1486911 38 100.0 35 GAATTGCAAA ...................................... CCTTATTTCCCGATTTCGCAAACCGAGAATAAGGA 1486984 38 100.0 36 AGAATAAGGA ...................................... TGAAGGGCGTCAAAGCTGCTATATCTTTGAATTTAT 1487058 38 100.0 36 TTGAATTTAT ...................................... AGAACAAAGATACAGGTCTTTATGCACGCATAACAG 1487132 38 100.0 36 CGCATAACAG ...................................... AGGAATTTTAAGTTGTGTAAAAATTAAAGTCTTTTA 1487206 38 100.0 35 AAGTCTTTTA ...................................... AATAGGAGAAATGTTCACTCCTGCTCTAGAGAGCG 1487279 38 100.0 37 CTAGAGAGCG ...................................... CTTGCCCCTGCTACTTGATAGCGTATTCCAATATCGC 1487354 38 100.0 36 CCAATATCGC ...................................... CCAAATCCGGTATCACATTTGCGGCAATAAATTTTT 1487428 38 100.0 37 ATAAATTTTT ...................................... TATATAATTCAGGTTGTAGACCCGCACGATAGCAGAC 1487503 38 100.0 36 GATAGCAGAC ...................................... GCAGACAAAAAATCGGATAATGAATATGAATAGAAG 1487577 38 100.0 36 TGAATAGAAG ...................................... ACAATAGAATTGGAGGATAAATGAGAAGGTTAATAA 1487651 38 100.0 36 AGGTTAATAA ...................................... TTAAACTCTCAATTAGGGAATCATAATTATTAGAAG 1487725 38 100.0 37 TTATTAGAAG ...................................... GGAAGAGAAAAATAGATATAAGCAAATCAGAGGATAA 1487800 38 100.0 37 CAGAGGATAA ...................................... ACATAGGCAGCAGGGGTAAAGACAGTAGTATCATGAT 1487875 38 100.0 36 GTATCATGAT ...................................... GCAATTCACCACGGAACACAGCAGTTGCCTTGGCAT 1487949 38 100.0 37 GCCTTGGCAT ...................................... AAAAAGGTCTTTCTCGCATCCCTTAATTCTGATGGTA 1488024 38 100.0 36 TCTGATGGTA ...................................... CACTTCTTATGGCTATCCCATCAGCTTCTTCCGTGG 1488098 38 100.0 37 TCTTCCGTGG ...................................... ATGGAAGGTCGAGTATCCATTTTTCAATTGCTTTAGA 1488173 38 100.0 36 TTGCTTTAGA ...................................... CCTCATTATCCCTCACCTCCCATCCGATGCAATTCT 1488247 38 100.0 37 ATGCAATTCT ...................................... TATTCACAATGAACTTTCACCCTACTTATTTGCCCGG 1488322 38 100.0 35 ATTTGCCCGG ...................................... TATTTGTGGTCATTGGTTAAAAGAGCCGGCTGGGA 1488395 38 100.0 34 CCGGCTGGGA ...................................... CGGTTCTTCCTTCACTATGATGTAGTCAACCATT 1488467 38 100.0 36 GTCAACCATT ...................................... AAAGACCGCTGGGTTTCCCAGCGGTCTGTAGATTCA 1488541 38 100.0 36 TGTAGATTCA ...................................... GCTGACTTTCGTTCTCGCGTTTTCGCGAGAGAGGAC 1488615 38 100.0 35 GAGAGAGGAC ...................................... CCCAATCGCCTTGCAAATCCTTCACATTGGGCTCA 1488688 38 100.0 35 ATTGGGCTCA ...................................... CCGCCTCTCCCACCGGAAATACCCGTCCATTCATA 1488761 38 100.0 36 TCCATTCATA ...................................... ACTGAAACTTTTTGCAAGAATTTTTGCTGTAAGTTG 1488835 38 100.0 36 CTGTAAGTTG ...................................... ACTGAAACTTTTTGCAAGAATTTTTGCTGTAAGTTG 1488909 38 94.7 37 CTGTAAGTTG ....................................CT ATTGTAAGTTCATATTTATAGTCTTCGCTAACATTGT 1488984 38 100.0 36 CTAACATTGT ...................................... ACCGAGTAAGAGTGATATTCGGGTCAGCTCAAGATT 1489058 38 100.0 36 GCTCAAGATT ...................................... TTGATTTGTGTTATCCACAATTTCCAAAATTTCCTC 1489132 38 100.0 36 AAATTTCCTC ...................................... CATAGTGTTGTGTAATATGATTCCAGGTTACATTAT 1489206 38 100.0 36 GTTACATTAT ...................................... ACCATATATACGCCTTCGCACAGTTTACCACTAATG 1489280 38 100.0 37 ACCACTAATG ...................................... ATCTTCCCAGCGATCGTTGCTGGGGAGGGAAAAGTTA 1489355 38 100.0 36 GGAAAAGTTA ...................................... AATGTTATTTTTTCCACACTCCCTTTTTCTGTCAAG 1489429 38 100.0 36 TTCTGTCAAG ...................................... TTTTACGTGCATTATTATTGATGACTTGTGGGTTGT 1489503 38 100.0 35 TGTGGGTTGT ...................................... GGATTTTCCCAGCGGTCTCAATGAGATGTGAAGGT 1489576 38 100.0 35 ATGTGAAGGT ...................................... TAACTACTGGTAATTACTGTACAATAGATTATCGT 1489649 38 100.0 37 AGATTATCGT ...................................... CAAGTCCACAAATGGATAGTTTGGGTGTCTTACTTAC 1489724 38 100.0 37 TCTTACTTAC ...................................... AGAGTTGTCTCTTGTTCACCTCGTCATTGGAAGAATA 1489799 38 100.0 39 TGGAAGAATA ...................................... AATCTCATTCAGAGGTTGACTCGTTAATTTTTTGTGGGG 1489876 38 100.0 35 TTTTGTGGGG ...................................... GTCTGGAAGGCACCGCAAGGTGGGGGGGGTGTCTC 1489949 38 100.0 36 GGGGTGTCTC ...................................... ACCGTCTGATCCTTATGAATCAGCAATGGTTAGGTA 1490023 38 100.0 36 TGGTTAGGTA ...................................... TCTGCTACCGAAAAAGCGCAGAATTGGAAGGTGTAT 1490097 38 100.0 36 GAAGGTGTAT ...................................... CTCTGGAAGGCACCGCAATGCGGGGGGGGATGTCTC 1490171 38 100.0 35 GGGATGTCTC ...................................... TCATTCTTACTAAAATGATAAATGCGGGGATAAAT 1490244 38 100.0 37 GGGGATAAAT ...................................... TTTTTATTGTGTTATTTTTGCACACCCTGTTTTCCGT 1490319 38 100.0 37 TGTTTTCCGT ...................................... AATGAAATTGATGAGAGTTTGCTTCCAGAGATAACAA 1490394 38 100.0 36 GAGATAACAA ...................................... GGAATAAATTTTTTACTTCTTCTGACCCATCGTGAA 1490468 38 100.0 37 CCATCGTGAA ...................................... ATTTGGTAATGAAGGCAATGGATATACTGGAGGACGG 1490543 38 100.0 37 TGGAGGACGG ...................................... AAGACGCAGGAGATTCAGGAAATCATTCGCGAAAGGC 1490618 38 100.0 37 CGCGAAAGGC ...................................... AGTATTAGTAATCAGTTATGGCGGTAAAGAAATACTA 1490693 38 100.0 35 AGAAATACTA ...................................... GTTTCCTATTTTCCTTGGAATCCGATGCGCTGTGA 1490766 38 100.0 36 TGCGCTGTGA ...................................... ACGAAGGCCGGGAATGCCCAGCCATCACGTGCCCAG 1490840 38 100.0 37 ACGTGCCCAG ...................................... TTTTTCCCGTTGCAATGATTGTCTTAAGCGTTTTCCA 1490915 38 100.0 35 GCGTTTTCCA ...................................... GAACAGTGAAAAAAGAATGGTTACCACGGAAGAAG 1490988 38 100.0 37 ACGGAAGAAG ...................................... TCAAAAACAGCCGCGCGGAAAGCGAGGCAAAAGGAGA 1491063 38 100.0 37 CAAAAGGAGA ...................................... ATGAATGACCACTCAACGGTAAAACCATTATCCTTGA 1491138 38 100.0 36 TTATCCTTGA ...................................... TTTATGATTCTATTTTCACGGACCCCCTTTTTCCGT 1491212 38 100.0 36 CTTTTTCCGT ...................................... ATATACAAACCTATGCATTCACTAATTTATTTATGA 1491286 38 100.0 36 TTATTTATGA ...................................... TTAAGGAACTGGATGAGGATACGGAATTATGGCTCG 1491360 38 100.0 36 TTATGGCTCG ...................................... GTAATTGTTTGGAATTTTTTATTGCGAGTAGATTAT 1491434 38 100.0 38 AGTAGATTAT ...................................... GAAAACAAAACAATTTCTGATTCCGGAAAACTTTTCAA 1491510 38 100.0 36 AACTTTTCAA ...................................... AAGAAGCACAGCTTATTTATGAATGGACTGGAAAAT 1491584 38 100.0 37 ACTGGAAAAT ...................................... ATAAATATAAAGAAGGAATACCAGGGGATGATATACC 1491659 38 100.0 36 ATGATATACC ...................................... TAAAAATAGATGACTTTGCCATTACATCTTTATTGT 1491733 38 100.0 37 TCTTTATTGT ...................................... TTTTTTTTGCCTTATATATTATAGGAATGGAAAAAAA 1491808 38 100.0 35 TGGAAAAAAA ...................................... AAGCTGAACCGAGTAAGAGTAATATTTGGCTCTGC 1491881 38 100.0 36 TTGGCTCTGC ...................................... TTTATGATGCCATTCTCCCACACCCCTTTTTTTCGT 1491955 38 100.0 36 TTTTTTTCGT ...................................... CGTTGGATGCCCTTGTAGATTTTGTTTCAGGAAATC 1492029 38 100.0 35 TCAGGAAATC ...................................... TGCAATCTATAAAATTCATATACCAGTTATCTCTT 1492102 38 100.0 36 GTTATCTCTT ...................................... ACAGTCCCTGGGAATTAGAAAAGGAGCAGATTACTA 1492176 38 100.0 35 CAGATTACTA ...................................... ATTGCATTTTTGTTCGTCTATATAAGCATTTCCAT 1492249 38 100.0 35 GCATTTCCAT ...................................... ATACCCGTCCAGGAGGGACCAATTAACGGGAGAGG 1492322 38 100.0 36 ACGGGAGAGG ...................................... ATTCTTTCGATATAGCCAAAGCAACTTCATTCTTGG 1492396 38 100.0 36 TCATTCTTGG ...................................... CATTTTTTAACTGCCATTTCTTTTTTCTCCTTTTTT 1492470 38 100.0 36 CTCCTTTTTT ...................................... ATTCATTGATATTATTTTCAAATTTGCTATTGAAGG 1492544 38 100.0 35 CTATTGAAGG ...................................... ATGCTTTGGATTTATGCTTTGAATGCGTATTTGGG 1492617 38 100.0 35 CGTATTTGGG ...................................... CTTAACATAGCCAAAGTTTGCATATATAAGTAAGA 1492690 38 100.0 34 ATAAGTAAGA ...................................... CAAGAGCTGTTTCTTATGCGTGCAGAGATTTATT 1492762 38 100.0 37 GAGATTTATT ...................................... TAGAGACGATTGTTATGGACTTACTCTTAGCGTTTAA 1492837 38 100.0 35 TAGCGTTTAA ...................................... TTATGAATCCAATACCCAGCCATTATTTCTACCAT 1492910 38 100.0 36 TTTCTACCAT ...................................... TATAGACCCCAAGAGGATTAAGGAGGAAAAATGGCA 1492984 38 100.0 37 AAAAATGGCA ...................................... AACTTTTCGATATGACAGGAAAAAATCCTAATGATCT 1493059 38 100.0 35 CTAATGATCT ...................................... CTTTGCCTTGGCCTTTGGCTTTGCCTTTGGCCTTC 1493132 38 100.0 36 TTTGGCCTTC ...................................... TCTGTTACACAGAAGGTAAAAAATTGGGAAATATAT 1493206 38 100.0 35 GGAAATATAT ...................................... CCGGTAACCGATACCACTACTCCTGCATCCGGTAA 1493279 38 100.0 36 CATCCGGTAA ...................................... GGTCTGGAAGGCACCCAATGCGGGGGGAGGTGTCTC 1493353 38 100.0 37 GAGGTGTCTC ...................................... TTTTTATTGTGTTATTTTTGCACACCCTGTTTTCCGT 1493428 38 100.0 37 TGTTTTCCGT ...................................... TCTTCTGCGATGACATTGACTATGGAATTCGCGAAAT 1493503 38 100.0 37 TTCGCGAAAT ...................................... AGATGAATTCCTTCCCAATTTTGACACTCATTCCCTA 1493578 38 100.0 39 TCATTCCCTA ...................................... ATTCACGTCCATAGAGTTGGTAATAATGGACTTGATCGT 1493655 38 100.0 39 ACTTGATCGT ...................................... AGAAAGAATGAAAACAATTCAAGCTTTATTAGGAGCGGA 1493732 38 100.0 35 TAGGAGCGGA ...................................... TGGAGTAAATCCATCTGCTTCTCGTTCGCGGAAAA 1493805 38 100.0 36 TCGCGGAAAA ...................................... TTAAGCGCTTTCCGAAATATGAGACCAGTCCCGTAA 1493879 38 100.0 35 AGTCCCGTAA ...................................... TCCATGTGTAGTGATATACCGAAAAAATGGGAAAG 1493952 38 100.0 36 AATGGGAAAG ...................................... AAAATTGACCCGAATAAGAAGAATATTCGGGTCTGC 1494026 38 100.0 36 TCGGGTCTGC ...................................... GCTACGGATACCACGAAAAAGCGGAAGACGGAAGGA 1494100 38 100.0 36 GACGGAAGGA ...................................... TCCGCGGCAAGCCAAGGCCAAGCAAAGGCATATATA 1494174 38 100.0 36 GGCATATATA ...................................... TGCGGGCAATGGAATAGATATTGACGCAGAAAAAAA 1494248 38 100.0 36 CAGAAAAAAA ...................................... GATTGCACGGGAGATAGAGGTCAAAGTAATAGCTAT 1494322 38 100.0 35 TAATAGCTAT ...................................... AGAGTCCTGAGACGGAGTGGAATCCTGAGAAGGAG 1494395 38 100.0 35 TGAGAAGGAG ...................................... GAAAGATGAAGACAGGAATATAGTAGATATACATC 1494468 38 100.0 36 GATATACATC ...................................... CTTATGATAACGAAATTCTTGTCCTTTCTTAGATAG 1494542 38 100.0 36 TCTTAGATAG ...................................... TACTGGAGAGTTGACCAGCATTGAACCTGATAGAGG 1494616 38 100.0 36 CTGATAGAGG ...................................... AGAAAATGCTAATGAATATTTCTTTGAGACACAAGC 1494690 38 100.0 38 AGACACAAGC ...................................... TGGAAGGAAAAAGGTATCCTGATATGGTTGAAAATGGG 1494766 38 100.0 35 TGAAAATGGG ...................................... AAGAATAGGTTATGAGTTATACTTATTGGCATTGG 1494839 38 100.0 36 TTGGCATTGG ...................................... TAGCCCTCAAAAGGACTAAGGAGGTAACCGATGTCA 1494913 38 100.0 36 ACCGATGTCA ...................................... AAAGTTTGCTTACCAGTAACGGGGTACAGAAACTTT 1494987 38 100.0 36 CAGAAACTTT ...................................... TTTATGGGCAACTCAATTGGAATATATTGTAGAAGC 1495061 38 100.0 36 TTGTAGAAGC ...................................... TGCATAGGAAGCTATTAGGTCTTTGAATTCATTGAG 1495135 38 100.0 37 ATTCATTGAG ...................................... TAGTTTGGTATGCTTACAGGTTTCCACTCTATTTTAT 1495210 38 100.0 36 TCTATTTTAT ...................................... TGAGTATCCATTTCTCCACTGCCTTCTTAAGAAGGG 1495284 38 100.0 36 TTAAGAAGGG ...................................... TTGAATTGTTTTCATTCTTTCTTCAGTTGAATCAGT 1495358 38 100.0 35 TTGAATCAGT ...................................... AGCAAGAAAAGATTATCTCTGGTTAAGCTCAGCAA 1495431 38 100.0 37 AGCTCAGCAA ...................................... GGGCCTGTAACCACAATTCTCAATAATGTATTGGTAA 1495506 38 100.0 36 GTATTGGTAA ...................................... TGACAACAGGAAAGATTGTAAACGTTATCCCCGATA 1495580 38 100.0 38 ATCCCCGATA ...................................... AAGTATGAGTTTGATTGTGGATGGTCTTTCCGCCATTA 1495656 38 100.0 37 TCCGCCATTA ...................................... CCTTTATTCCGAGTATCCATTTCTCTATCGCTTTAGA 1495731 38 100.0 35 TCGCTTTAGA ...................................... TGTAGCTAAAATCATTCTGGGAAAATACAAGTTGT 1495804 38 100.0 37 TACAAGTTGT ...................................... AGTATGAGTTTGATTGTGGATGGTCTTTCCGCCATTA 1495879 38 100.0 35 TCCGCCATTA ...................................... TTTTTAGACTGTAAGGGTAAAATCCGAGGAAAAAT 1495952 38 100.0 36 GAGGAAAAAT ...................................... TTTAGTCCTCTTTCGGTTAGCCGAAAGAATGAAAGT 1496026 38 100.0 36 GAATGAAAGT ...................................... TGAAAAGATGTCAAAATACTTTGATTTGAAATCAGT 1496100 38 100.0 37 TGAAATCAGT ...................................... TCCTTTCTTAGATAGCAACGCCATTCATTATTAGTTG 1496175 38 100.0 36 TTATTAGTTG ...................................... AGTTTGGTATGCTTACAGGTTTCCACTCTATTTTAT 1496249 38 100.0 36 TCTATTTTAT ...................................... GGAATTAGTCAAAAGCTCACTAATTCCGCAATCATT 1496323 38 100.0 37 CGCAATCATT ...................................... TTGTTGTTCCTTCTTCAATGGAGTTAGTTGATGCTCT 1496398 38 100.0 39 TTGATGCTCT ...................................... ACGCGCGGATCCGGTTCCATTATTTGCCAGTAAGTTTCC 1496475 38 100.0 37 GTAAGTTTCC ...................................... CTTGACAGGAAAAATAGGTCCGTGAAAATAGCGTCAT 1496550 38 100.0 36 ATAGCGTCAT ...................................... CTATCCATAACATCACTGTCTACCTAAACCAAGACC 1496624 38 100.0 36 AACCAAGACC ...................................... AATAACATCATCAAAAATAGCCAAGACAAAGCTTGG 1496698 38 100.0 37 CAAAGCTTGG ...................................... AATAATGGTTGCATTGGCATTTTCTTTGACTTTTTCA 1496773 38 100.0 36 GACTTTTTCA ...................................... TTATGGGGGTATTCTATTCCTTGCACTTTTCTATGT 1496847 38 100.0 35 TTTTCTATGT ...................................... TCAAAGAAAATGATTGGAGAATTGCCTAATGAATA 1496920 38 100.0 36 CTAATGAATA ...................................... GCAAGATTGGTGTTATCCCGATATGGAATCCAATTA 1496994 38 100.0 36 AATCCAATTA ...................................... TTATTTCTATGCTGCTGTCCAGCTTGCGCATCCTGT 1497068 38 100.0 37 CGCATCCTGT ...................................... ACAGAAAGCGGGGTATTATGATTTAGTTATAGAACTA 1497143 38 100.0 35 TATAGAACTA ...................................... ATATGGACAGCTGATACTTATACCGAAGCAACCCT 1497216 38 100.0 35 AAGCAACCCT ...................................... AATGTCTGTCTGGACTGTCTGTATATCTGGCTCAT 1497289 38 100.0 35 TCTGGCTCAT ...................................... ATTTTTGAATTATTTTTATTTTCCTTCATCAGGCA 1497362 38 100.0 37 TCATCAGGCA ...................................... TGTTGTCTGAATGTTTTACCATTTTTAATTTCATATT 1497437 38 100.0 36 ATTTCATATT ...................................... AAAATCAGGGGATTCCATCCCCGCCTATAGGAGGAT 1497511 38 100.0 36 ATAGGAGGAT ...................................... GTATGAAGCTTACAAATGCGATTGAGAAGGCTATCG 1497585 38 100.0 36 AAGGCTATCG ...................................... GATAGGTGTGAAGAAGTTCAGATGTTCTATTTTGAG 1497659 38 100.0 35 CTATTTTGAG ...................................... ATCATCATCCGATATTACTGTTCCATTTTCAATAA 1497732 38 100.0 38 TTTTCAATAA ...................................... ATATATGCATTAACCATTTTCTCGTCATAGCTTGACAT 1497808 38 100.0 35 AGCTTGACAT ...................................... CCGTATAGTTCGTTATGATCTTCCAGAGTAATTTG 1497881 38 100.0 36 GAGTAATTTG ...................................... CGGAGCATTGTTCACTTCACGCTTTCATATTTGGTA 1497955 38 100.0 37 ATATTTGGTA ...................................... CTATCGGCACTTTTACTCCATATATCGGCAATTGAGC 1498030 38 100.0 36 GCAATTGAGC ...................................... TTTAGCCGCCGCCTTTCCGGAAATTTACCGGGAGCA 1498104 38 100.0 37 ACCGGGAGCA ...................................... CACATACGCACTGCATGCTGCGGCACATCTCCCGCCA 1498179 38 100.0 37 TCTCCCGCCA ...................................... TTTGATCTTGAAGAGATGGGCATGGATATGCCAGAGA 1498254 38 100.0 35 ATGCCAGAGA ...................................... ACTAATGGCTGAAATGCTTTGGGGCTTTGGCGGAG 1498327 38 100.0 36 TTTGGCGGAG ...................................... CCGCTTGCATTGAAGGACTCGATAAGGAATTCTTCA 1498401 38 100.0 35 GAATTCTTCA ...................................... TGTGCCAGCACCACCTATTCCACCAGTGGCTAATC 1498474 38 100.0 35 GTGGCTAATC ...................................... CGGAATAATATCTATTTCATCAATTCCTGCATCCG 1498547 38 100.0 35 CCTGCATCCG ...................................... ACAACGGAGCGAATGCACGAAATATTCAATGCAAA 1498620 38 100.0 35 TCAATGCAAA ...................................... GAAGGAAAAGGGAGCTATCCCAATTATCCTCAGAG 1498693 38 100.0 36 ATCCTCAGAG ...................................... GGTTAGCGGAGAGGCAGGTGGAAAAATATATTATAT 1498767 38 100.0 36 TATATTATAT ...................................... AATTCTTCAATACCCTGGTGCCAAAGTGGGATGGCT 1498841 38 100.0 36 TGGGATGGCT ...................................... CCGATGCCGAAGTGTCCCCACTCTGCTGTTTTTTCA 1498915 38 100.0 TGTTTTTTCA ...................................... TCATCTTCTT ========== ====== ====== ====== ========== ====================================== 167 38 36 GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.42%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.60,-2.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [340,472] Score: 0/0.18 # # Final direction: R [0,5.28 Confidence: HIGH] >NC_020449 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 997341 37 100.0 47 AAAACTGATG ..................................... CTCCCAGAACTCCTGACGGGTACTGTTGTACCCGTCCAGGATACTCC 997425 37 100.0 36 AGGATACTCC ..................................... GAAAACACTGGCACAGGATCAGCTCCAAAACTGATG 997498 37 100.0 47 AAAACTGATG ..................................... CTCCCAGAACTCCTGACGGGTACTGTTGTACCCGTCCAGGATACTCC 997582 37 100.0 37 AGGATACTCC ..................................... CGAAAATATTAAAAGAAACGGCTTCCCATTTTCAGCC 997656 37 100.0 40 ATTTTCAGCC ..................................... TCAAACCGGAAGTGGTTTCCCGGAAAAGCAAAAGATATGC 997733 37 100.0 41 AAAGATATGC ..................................... TTCTCGTATTATTTCTTTTAATTCTTCTTTTTTCATTTTTT 997811 37 100.0 37 TTCATTTTTT ..................................... TTGCCTCAGATAGGGTTATCATCCTCATTTCGCTGTA 997885 37 100.0 41 TTTCGCTGTA ..................................... AAAAAAAAGGCAAATTTGATAATTCCTGAATTATATCAGGA 997963 37 100.0 37 TATATCAGGA ..................................... GCTATAATCGGCTTCTGCAATATATATATTTACTCGT 998037 37 100.0 39 ATTTACTCGT ..................................... GAATTCATCGCATAGTTCTACATATTTTTCCACCACCCA 998113 37 100.0 39 CCACCACCCA ..................................... ACTTGATAGTGGTCTGATGTAAATTGAATACATCTTTAT 998189 37 97.3 38 ACATCTTTAT .................................T... AGCACCTCCCAGAGGATGTAGATAAATGAGGCAATCGT 998264 37 97.3 35 AGGCAATCGT .................................T... CAATTGCCAACTTCTTCACCTCTCTGTCCTGAAGG 998336 37 97.3 37 GTCCTGAAGG .................................T... TCACAACTTTCTATTTCCGGATGGTAGAATTCACAGT 998410 37 97.3 41 AATTCACAGT .................................T... TCCCTAACCCAACCAAGCCCGCTAAGGTCGATATCTGGCTT 998488 37 94.6 37 TATCTGGCTT ...........T.....................T... TTCGCCGAACTCTCCAGTTCTATAAGCTCTAATCGCA 998562 37 97.3 33 TCTAATCGCA .................................T... GGTGCAAGCACTTATTCACTTTATGACAACCCA 998632 37 97.3 TGACAACCCA .................................T... AACTTTACCACAGTTCCTTCGGGAAGCTCACCACGGAACAC ========== ====== ====== ====== ========== ===================================== 18 37 38 ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:59.46%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.90,-3.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [4523,1262] Score: 0.18/0.18 # # Final direction: F [5.46,0 Confidence: HIGH] >NC_020515 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 843484 36 97.2 30 TATATGTAGG ...............T.................... GCCGATTTTAAATTCCATCTCAAGCTTTTC 843550 36 100.0 30 CAAGCTTTTC .................................... AAAGTCCCACGTCAAAATAATACTTGACAA 843616 36 100.0 30 TACTTGACAA .................................... ATGCTGACAAATTATTAGGCGTATGGCAAC 843682 36 100.0 30 GTATGGCAAC .................................... GGGCAGTTGCAAGACATGTATCAAAATCTT 843748 36 100.0 30 TCAAAATCTT .................................... CACAATCAAAAGCGATTGTTGATGATTCAA 843814 36 100.0 30 GATGATTCAA .................................... CGTACATTCGGTTATACATCAACGCTTAAA 843880 36 100.0 30 AACGCTTAAA .................................... CCTCTTTGAGATGTTCCACGAACCACAACG 843946 36 100.0 30 AACCACAACG .................................... CAGTGTATTCGCATTGGAAAGCGTAAAAGA 844012 36 100.0 30 GCGTAAAAGA .................................... TATTTTCTGTACCACAACCTTGCCTTGCTT 844078 36 100.0 30 TGCCTTGCTT .................................... CGTACATTCGGTTATACATCAACGCTTAAA 844144 36 100.0 30 AACGCTTAAA .................................... CCTCTTTGAGATGTTCCACGAACCACAACG 844210 36 100.0 30 AACCACAACG .................................... CAGTGTATTCGCATTGGAAAGCGTAAAAGA 844276 36 100.0 30 GCGTAAAAGA .................................... TATTTTCTGTACCACAACCTTGCCTTGCTT 844342 36 100.0 TGCCTTGCTT .................................... CGAAGTAAAAA ========== ====== ====== ====== ========== ==================================== 14 36 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-0.50,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [65.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [13,458] Score: 0.18/0.18 # # Final direction: R [0.77,0.96 Confidence: LOW] >NC_020504 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================== ====== 62791 22 100.0 39 NNNNNNNNNN ..........C........... GAGAAGGACGCCTACAACGCTGCGGCGTGGGTGGGACCA 62852 22 100.0 40 NNNNNNNNNN .A........G........... GCGATCGAGCGGGTGTCGGCGGCGCTGTGCCGGGGACCAT 62914 22 100.0 39 NNNNNNNNNN C..G..G.T............. TTGCCGGTCGCACCCGACAGGGCTTCAACGCGGGGATGC 62975 22 100.0 39 NNNNNNNNNN ...................... GTTACCGGTAGGGCTGCGCCTCGCCGTATCACGGGACCA 63036 22 100.0 39 NNNNNNNNNN ....T................. ATGAACCCGGACCAGGAGGAGAACAGCTTGTCGGGACCA 63097 22 100.0 38 NNNNNNNNNN ..........G.......A... ATAATCGTGATCGCCTGGCAGAGTCCGAGACGGGATCA 63157 22 100.0 39 NNNNNNNNNN ...................... CCCGTGGTGACGTTTCCGAAACCGTCCGGGTTGGGACCA 63218 22 100.0 39 NNNNNNNNNN ...................... GCGAGGACGTCGTCGTCTCCGGACCCGGCGTGGGGACCA 63279 22 100.0 1 NNNNNNNNNN ........C............. NNNNNNNNNN ========== ====== ====== ====== ========== ====================== 9 22 39 TCCCCGCGGGTGCGGGGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [2,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [31.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [406,56] Score: 0.18/0.18 # # Final direction: F [0.45,0.41 Confidence: LOW] >NC_020518 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2388236 29 100.0 32 NNNNNNNNNN ................AT.........A. CAGCGTCAGGCGTGAAATCTCACCGTCGTTGC 2388297 29 100.0 32 NNNNNNNNNN ...........T................. TCGGTTCAGGCGTTGCAAACCTGGCTACCGGG 2388358 29 100.0 32 NNNNNNNNNN ...............AA............ GTAGTCCATCATTCCACCTATGTCTGAACTCC 2388419 29 100.0 32 NNNNNNNNNN ............................. CCGGGGGATAATGTTTACGGTCATGCGCCCCC 2388480 29 100.0 32 NNNNNNNNNN ............................. TGGGCGGCTTGCCTTGCAGCCAGCTCCAGCAG 2388541 29 100.0 32 NNNNNNNNNN ............................. AAGCTGGCTGGCAATCTCTTTCGGGGTGAGTC 2388602 29 100.0 32 NNNNNNNNNN ............................. TAGTTTCCGTATCTCCGGATTTATAAAGCTGA 2388663 29 100.0 33 NNNNNNNNNN ............................. GCAGGCGGCGACGCGCAGGGTATGCGCGATTCG 2388725 29 100.0 33 NNNNNNNNNN ............................. GCGACCGCTCAGAAATTCCAGACCCGATCCAAA 2388787 29 100.0 32 NNNNNNNNNN ............................. TCAACATTATCAATTACAACCGACAGGGAGCC 2388848 29 100.0 32 NNNNNNNNNN ............................. AGCGTGTTCGGCATCACCTTTGGCTTCGGCTG 2388909 29 100.0 32 NNNNNNNNNN ............................. TGCGTGAGCGTATCGCCGCGCGTCTGCGAAAG 2388970 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 13 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,6] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [41.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [84,107] Score: 0/0.18 # # Final direction: R [0,1.92 Confidence: HIGH] >NC_020518 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2414549 28 96.4 33 GTTATATGGT ..........................T. GACAGAACGGCCTCAGTAGTCTCGTCAGGCTCC 2414610 28 100.0 33 GTCAGGCTCC ............................ CTGTTTTCGCAAATCTATGGACTATTGCTATTC 2414671 28 100.0 33 ATTGCTATTC ............................ GGGCGCACGGAATACAAAGCCGTGTATCTGCTC 2414732 28 100.0 33 GTATCTGCTC ............................ TGGCTCTGCAACAGCAGCACCCATGACCACGTC 2414793 28 100.0 33 TGACCACGTC ............................ GAAATGCTGGTGAGCGTTAATGCCGCAAACACA 2414854 28 100.0 33 CGCAAACACA ............................ ATTACGCCTTTTTGCGATTGCCCGGTTTTTGCC 2414915 28 100.0 GGTTTTTGCC ............................ TCTAAACATA ========== ====== ====== ====== ========== ============================ 7 28 33 GGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [641,341] Score: 0/0.18 # # Final direction: R [0,1.65 Confidence: HIGH] >NC_020505 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 700025 25 80.0 60 TGGTGCCATC ...........T.........---- AACTTCGCCAACTCCGGTGACCGTTCCGCTAGCGTGGCTTCCGGTTATCGTGTTATTATA 700110 25 92.0 62 TGTTATTATA ......C....T............. TCCCAGTCGGTGCCGGTTACGGTAGCGCTCGCGCTGCTGTTGCTGATAACGCTCCCCTCATC 700197 25 100.0 56 TCCCCTCATC ......................... CTGCCCATACCGCTGACGGTTCCGCTGACGCTACTCCCTTTGATGGTACCGCCGAT 700278 25 100.0 TACCGCCGAT ......................... TTGTAATTCCCT ========== ====== ====== ====== ========== ========================= 4 25 59 GCTGTATCCGACCAATCCGCCGACA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [43.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [1618,2480] Score: 0/0.18 # # Final direction: R [0.37,0.68 Confidence: LOW] >NC_020504 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 79222 19 100.0 42 NNNNNNNNNN ...............C... AAGGGCATCGTCGGCGTCTGGAACAGGGTCGCGTGCTCCCCG 79283 19 100.0 42 NNNNNNNNNN .GGGT.............. CGTGCGACCCCGGGGGAGACCTATGTGCATCCCTGCTCCCCG 79344 19 100.0 29 NNNNNNNNNN .....A............. GCCGTACCAGCCCAGCGGCCGGAAGCGCG 79392 19 100.0 42 NNNNNNNNNN .CA.T........A..... CTGTCGGAGCGCAGGGGCAAGACCGCCGCCGTCTGCTCCCCG 79453 19 100.0 43 NNNNNNNNNN ................... AAGTGGGAGGACGCGGGCACGGACTTCCACCGCCTGTTCCCCA 79515 19 100.0 42 NNNNNNNNNN ................... CCGGCAGCGTGGGGCAACAAGCGCAAGGGCTACTGCTTCCCG 79576 19 100.0 48 NNNNNNNNNN ................... TCCTCCACGAGGGCACGGGATTCACGGCGGGACTGCTCCTGCTCCCTG 79643 19 100.0 42 NNNNNNNNNN T.................. TGCACCATGATCTTGCCCGGTTCCTCGATGCTGTGCTCCCCG 79704 19 100.0 38 NNNNNNNNNN ...............C... AAGGGCATCGTCGGCGTCTGGAACAAGGTCGCGTGCTC 79761 19 100.0 42 NNNNNNNNNN .C.G...A........... GGGGCGCTCAAGCCCGGGCTCGAGTACCTCAAGTGCTCCCCG 79822 19 100.0 42 NNNNNNNNNN .G................. CACCCCGAGGCCGAGCACTGGATCGCCGACCTGTGCTCCCCG 79883 19 100.0 1 NNNNNNNNNN ..............TGT.G NNNNNNNNNN ========== ====== ====== ====== ========== =================== 12 19 41 CACCCGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [2,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [10-10] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [156,95] Score: 0/0.18 # # Final direction: NA [0,0 Confidence: NA] >NC_020540 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 798187 36 100.0 30 AGTCTACGAG .................................... GGGTGGTTGGCTGACGCATCGCAATATTAA 798253 36 100.0 30 GCAATATTAA .................................... AGGAATATCCGCAATAATTAATTGCGCTCT 798319 36 100.0 ATTGCGCTCT .................................... TAAATTTGTTTAGCAGGTAAACCGTGCTTT ========== ====== ====== ====== ========== ==================================== 3 36 30 GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: F [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-2.20,-0.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [104,180] Score: 0/0.18 # # Final direction: F [0.87,0 Confidence: HIGH] >NC_020515 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1552928 32 100.0 35 NNNNNNNNNN ................................ AGGTTAAATCTAGACGAGATAATGGAGATTGCCAA 1552995 32 100.0 34 NNNNNNNNNN ................................ TGTTAAAAATAAACCCTGCACGGGGCAGGGTCGG 1553061 32 100.0 34 NNNNNNNNNN ................................ ACCGAAACCGAAATCTGGGCAAGTGAGAGCGACA 1553127 32 100.0 36 NNNNNNNNNN ................................ ACATTAGGAACGCAAGACCAAGCCTCATTACAAGGC 1553195 32 100.0 36 NNNNNNNNNN ................................ TTGCAGAGGATAGAAATTTCCGCACCCATATTTTCG 1553263 32 100.0 34 NNNNNNNNNN ................................ TTGATATTATTGATAATATGGAAAAAGAGATGAC 1553329 32 100.0 34 NNNNNNNNNN ................................ ACTCGAAGCCTTAGAGCCGGATTTTGTGCCAATC 1553395 32 100.0 34 NNNNNNNNNN ................................ AAATGAAAGCGTATAAATCTCGCCACTTTGCAAT 1553461 32 100.0 34 NNNNNNNNNN ................................ TGGCGTGGTAAGTACCGATAACATTCCCGAAGAC 1553527 32 100.0 34 NNNNNNNNNN ................................ TATTACAACATTTGACAATCAAACATTATGGGAG 1553593 32 100.0 35 NNNNNNNNNN ................................ CAAAGGTGCTATTGTACTTAGTAGCAAGTCAATTC 1553660 32 100.0 34 NNNNNNNNNN ................................ TAAGCAATTATAAAGAAAGAATAAAAGACGTTGC 1553726 32 100.0 37 NNNNNNNNNN ................................ ATCACCGTCCAACTTACCTTTGTTGAATGCTTGTGAG 1553795 32 100.0 34 NNNNNNNNNN ................................ TAATATGCCCTTGCATAAATTCCACTTTGCCGTG 1553861 32 100.0 34 NNNNNNNNNN ................................ CTGCCGAGTAATAAGCCAAGCAGAATTTCAAGCA 1553927 32 100.0 34 NNNNNNNNNN ................................ TTGTGAACATCGAGCAAAATATCGGTCATTGCAC 1553993 32 100.0 35 NNNNNNNNNN ................................ ATCATAAGTGGCTTTACGAGTGGCTCTTGGCTCTT 1554060 32 100.0 34 NNNNNNNNNN ................................ CCTAGCCCCCAAGCACCTTTGGCAATAGTCTGTG 1554126 32 100.0 34 NNNNNNNNNN ................................ GAGATTTAGTAATTGCTCCATTGAAACGTGGAGA 1554192 32 100.0 37 NNNNNNNNNN ................................ GTGCCGAGACTTGCCGGTGTATCGGTCACAGCTAAAC 1554261 32 100.0 36 NNNNNNNNNN ................................ ATAGCCGCCCAGCTCCTTAATCTTATCCAGCGACAT 1554329 32 100.0 35 NNNNNNNNNN ................................ AAATTATGCCTTAATAATACTTTAAGTTTTTAAAA 1554396 32 100.0 35 NNNNNNNNNN ................................ TCTTCTGAGCTTTCCAGGCATTAAAACCTTGCTCA 1554463 32 100.0 34 NNNNNNNNNN ................................ TCAGGGTCGCATAACTCCACTTTGCAGCGATGTT 1554529 32 100.0 34 NNNNNNNNNN ................................ AGTGAATATACCGCTCAGCGTGCGTTAGAAAATC 1554595 32 100.0 35 NNNNNNNNNN ................................ GCCGTTTAGATAACCTTGTCAGGCTTGGCACGATT 1554662 32 100.0 34 NNNNNNNNNN ................................ ACTATTTTTCACGTTATAGAGATCGTATTAGCAA 1554728 32 100.0 34 NNNNNNNNNN ................................ ATTACCCTGCCAAATTATCGGTTGGCTGAGTTCG 1554794 32 100.0 35 NNNNNNNNNN ................................ TCATCGGGCTTTAAGGTCAAGGCATTATCCACTAA 1554861 32 100.0 1 NNNNNNNNNN .....................GTGAGCT...A NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 30 32 34 CCAGCTACGTACGCGTAGCTGTGAGTTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [271,281] Score: 0/0.18 # # Final direction: F [1.15,0.27 Confidence: MEDIUM] >NC_020508 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================================== ====== 574895 53 98.1 61 CGCTTGTTGC .......................G............................. TTTTTCATTCCTAGCTCTTGATACGCAGTCTTTATAAGCCTTAACGCTCTCTTTAGCTTCT 575009 53 96.2 64 TTTAGCTTCT .............................T.G..................... AGCTTCAGTTTTGGCTTGAGATACGCAATCCAAATAAGCCTTAACGCTCTCTTTGGCTTCTTCT 575126 53 100.0 61 GGCTTCTTCT ..................................................... AGCTTCAGTTTTGGCTTGAGATACACAGTCTTTATAAGCTTTAAGACTCTCTTTAGCTTCT 575240 53 100.0 TTTAGCTTCT ..................................................... TTTTTCATTCC ========== ====== ====== ====== ========== ===================================================== 4 53 62 TCTAAAAGTTTTTTCGCTTCAGGCGTGAGCAATTTCTCGCATTCTTTTTTCTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.26%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.50,-5.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [3415,1909] Score: 0/0.18 # # Final direction: R [0.37,0.41 Confidence: LOW] >NC_020517 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================= ====== 1739120 33 97.0 35 TGGGGGCTTG ....................A............ TGTCCCTCTCCTTAGTACCAGTTGTGGGCGAGCCA 1739188 33 97.0 36 GGGCGAGCCA ............................T.... GTCGAAACATGTGTTTTCGCGCAACCTGAGATTTAC 1739257 33 100.0 36 TGAGATTTAC ................................. GACCTCGCGGACCTCATCCTCGACACCATCAGCAGG 1739326 33 100.0 CATCAGCAGG ................................. TCGGGTTTCG ========== ====== ====== ====== ========== ================================= 4 33 35 ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [7,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-8.20,-8.40] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [67,98] Score: 0/0.18 # # Final direction: R [0.37,5.18 Confidence: HIGH] >NC_020515 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1563910 32 100.0 36 AATATAGGGA ................................ AAAATTGCGTGGACGGACAATCCGGCGTGGATTTTG 1563978 32 100.0 35 GTGGATTTTG ................................ TAAAATTATGTTACTACACTTGGTTGACGTAACAT 1564045 32 100.0 35 GACGTAACAT ................................ GCTTCTGAATATGATGCTCAAGAATGGCTAAATGC 1564112 32 100.0 35 GGCTAAATGC ................................ ACAGTCATAACGTTGGTGCAGCACAAAGCCGTTAT 1564179 32 100.0 35 AAGCCGTTAT ................................ TTGCCAGTTTAAGTAATACCATTTCCACAGCAGCT 1564246 32 100.0 35 CACAGCAGCT ................................ GTGTTTTACCAGGATTTCTTTTGCTAGTGTCTCAG 1564313 32 100.0 34 AGTGTCTCAG ................................ TTTCGCACGTTGTGGCGATAAAGCAGGAAATAAA 1564379 32 100.0 34 AGGAAATAAA ................................ TAGTTCTTTACTTTAATGAACTAAAAGTACATAA 1564445 32 100.0 35 AAGTACATAA ................................ GTACGTAGCTGGATACAAAAGGCGCAACCGTTAGA 1564512 32 100.0 33 AACCGTTAGA ................................ TTTTATGTACACTAAACGTATAATGAAGTCAAT 1564577 32 100.0 35 TGAAGTCAAT ................................ TAAATAACGGAGCAAATCATCAAGACAACTATCAA 1564644 32 100.0 35 CAACTATCAA ................................ AAAATGACGTGGTCGGAGCAATGCCGAAAAGCCAA 1564711 32 100.0 34 GAAAAGCCAA ................................ ATCTATTGAAGGCTGATAATATGCTTGACTCTGA 1564777 32 100.0 35 TTGACTCTGA ................................ AATTAAGTACCGTACGTTGATGACGGAACTTGAAG 1564844 32 100.0 35 GAACTTGAAG ................................ GCTATGGGGGATTCGTCAATTTCAATTTTATGGTG 1564911 32 100.0 34 TTTTATGGTG ................................ CATTGCAACCTGCCATTCACTACGAAATCTACAT 1564977 32 100.0 34 AAATCTACAT ................................ CGATAAGCCGGTCAAATTACCGAAATGCTCCAAT 1565043 32 96.9 36 ATGCTCCAAT ..........C..................... CTTGCGAGTGTTGATACGGTCAATTAGCGAGAAGTT 1565111 32 93.8 GCGAGAAGTT ..........G..A.................. ATCTTGAAGT ========== ====== ====== ====== ========== ================================ 19 32 34 GCAGCCACCTTCGGGTGGCTGTGAGTTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.90,-3.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [55.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [202,169] Score: 0/0.18 # # Final direction: F [1.05,0.37 Confidence: MEDIUM] >NC_020517 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================= ====== 1744412 33 100.0 36 ACTCACAATG ................................. GGTCACGCCGTCCCATGCGCTTTTCAATCCCCGGAG 1744481 33 100.0 34 ATCCCCGGAG ................................. CCTGCTCCGTCCCGGCCCGCTCCCACTCCACGCT 1744548 33 100.0 33 ACTCCACGCT ................................. GTATTCCAGCGTGCCGGCCGTGTCGGGCACGGT 1744614 33 100.0 36 CGGGCACGGT ................................. CCGGGTCGGTGTCACGGCTGATGCAATCCAAGTGGA 1744683 33 100.0 36 TCCAAGTGGA ................................. CCAGTTCGCGCCGTCCTGCGCTCCCTTGCCTGCGAT 1744752 33 100.0 35 TGCCTGCGAT ................................. TTCATGTCCGCGCCCGCCTTGCGCATGGTGGACAC 1744820 33 100.0 34 TGGTGGACAC ................................. CGGGTTTCACCGATGCTATGAAAGCAAACGTGCT 1744887 33 100.0 34 CAAACGTGCT ................................. GGCGTGGCGGCGTGTCCGCTGGCGTCGTCGGATT 1744954 33 100.0 36 TCGTCGGATT ................................. ATGGCACATGTGCGCCGCCGTCGTATTTCGTGGAGA 1745023 33 100.0 33 TTCGTGGAGA ................................. GACAAACTCCTAGCCCCCATACCCCCAGACAGT 1745089 33 100.0 35 CCCAGACAGT ................................. GTCATCCAGTCTGGACAGTACGTTTCGATGTTCTG 1745157 33 100.0 35 CGATGTTCTG ................................. AACGCATAGCCAAAGCCTGCGGCATGACCACACAG 1745225 33 100.0 34 GACCACACAG ................................. CGTGACTTGGGATCCGAGCGCCATCAGAAAGCTC 1745292 33 100.0 35 CAGAAAGCTC ................................. TCGCTTTACTTCGATACGGGATTCCGCCGGGCGAG 1745360 33 100.0 34 GCCGGGCGAG ................................. CGCAGACCCTCGGCGACTTCTACGTCAAGTCCCT 1745427 33 100.0 33 TCAAGTCCCT ................................. CATTAGTGAGCCTGGTCTTTATCGTCTGGTGAT 1745493 33 100.0 35 GTCTGGTGAT ................................. CACTGTCGCGGTGTGCTCAATATAACCGTGTCATA 1745561 33 100.0 35 CCGTGTCATA ................................. TTATTCGAACGTGTTTGGCGGGGTTCACGCCTGAT 1745629 33 100.0 35 CACGCCTGAT ................................. GCGTTCGAGCACATCCCCGCAGGCAGCGCCGCGAA 1745697 33 100.0 34 GCGCCGCGAA ................................. CGGCGCTGTGTTCCTCATGCGTGGCCTTGTTGTT 1745764 33 100.0 35 CCTTGTTGTT ................................. TCGGTGACCGTGTACGTGCCGTAGCCGAGGCCCTT 1745832 33 100.0 35 CGAGGCCCTT ................................. ACCGCCTCGACCGGCGCGTGGGGCCTAGACTACGC 1745900 33 100.0 35 TAGACTACGC ................................. GGTCGCGACGGGCGTTGATACGATTGCATACAAAG 1745968 33 100.0 35 GCATACAAAG ................................. CAGCATATTGGATTGCAATGTCACGTAATCAGGCG 1746036 33 100.0 34 TAATCAGGCG ................................. TTACGGCGAACCGAGCGATTTACGTGCGCTCTCG 1746103 33 100.0 35 TGCGCTCTCG ................................. GTGACCAGGAGATGCGCCGTGTCATGCGGATCGTA 1746171 33 100.0 35 GCGGATCGTA ................................. CGACCGTCACAGACCTGTTCGAGATCGGCAGTCAG 1746239 33 100.0 35 CGGCAGTCAG ................................. TTTGAGCGCGGGCAGATTGCAATACCCCATACATC 1746307 33 100.0 34 CCCATACATC ................................. GAATGCGATGAGAGGGGTGGACGCTGTAGGATAT 1746374 33 100.0 35 TGTAGGATAT ................................. GCTGTGCCGAATTTGGACGTGGCCACTTTGGCGCT 1746442 33 100.0 30 CTTTGGCGCT ................................. GATTCGTATACAGGGCGGTTGCGGTAACCG 1746505 33 100.0 34 GCGGTAACCG ................................. CCAGCTTATCCGAGCCCGTGACCTCGGACTGTTG 1746572 33 100.0 34 CGGACTGTTG ................................. TTTGCTCGGCGTATTCATCGTCTCGCACATAGTC 1746639 33 100.0 35 GCACATAGTC ................................. TATCACGCCGATACGACTTTTTTCATATATGGAAG 1746707 33 100.0 36 TATATGGAAG ................................. CCTGGAATTCACTGTGCTCCGCCGCATCTGCAGGCA 1746776 33 100.0 33 TCTGCAGGCA ................................. GGACTCCCGATCCGCCACATTGGGCCTGTCCGA 1746842 33 100.0 34 GCCTGTCCGA ................................. AACACGGGTTATCTCTCATTCGCCGGTTTCCTAG 1746909 33 100.0 35 GGTTTCCTAG ................................. ATGTCCATGCGCGCACTATTAGTTGCGTTTGGCAT 1746977 33 100.0 36 CGTTTGGCAT ................................. GTGCGTCCCGTTCCGCGTCGCGATCGAGCGGATCGT 1747046 33 100.0 33 AGCGGATCGT ................................. CTGGCACCCGCGCTCCACGCCGACTTGTTGCCG 1747112 33 100.0 33 CTTGTTGCCG ................................. TGACCGCGTTCACCATCCTCATGTGCTTCTTCG 1747178 33 100.0 35 TGCTTCTTCG ................................. TTGCGCAGGTGCGGTGGGTCGAGCACGACCATGCG 1747246 33 100.0 CGACCATGCG ................................. CGCGAAAATG ========== ====== ====== ====== ========== ================================= 43 33 34 ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [7,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-8.20,-8.40] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [266,1520] Score: 0.18/0.18 # # Final direction: R [0.64,4.68 Confidence: HIGH] >NC_020515 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 950176 32 100.0 34 AAACCATTAA ................................ GATTACCTGCTACACGATTTACCCAACCTTTGCC 950242 32 100.0 35 AACCTTTGCC ................................ GCACGAACTCCGCCGTGTTCTTTCATAAAGTTGCG 950309 32 100.0 35 TAAAGTTGCG ................................ ATTTCTGAAACAGGGATTTGCGTTTCATTCCATTT 950376 32 100.0 35 CATTCCATTT ................................ TTGCTGCCGTCTCTAAATAGCCACTATCAGCAAAT 950443 32 100.0 35 ATCAGCAAAT ................................ CAAGCAACACGATTTATTTGTAATACCGCTCTGTC 950510 32 100.0 CCGCTCTGTC ................................ TCCCTATATC ========== ====== ====== ====== ========== ================================ 6 32 34 GTTTCAACTCTCAGCCACCTACAGGTAGCTGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [7,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.10,-2.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [84,337] Score: 0.18/0.18 # # Final direction: R [0,1.19 Confidence: HIGH] >NC_020520 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 2330345 20 100.0 29 NNNNNNNNNN ..........G......... TCGACGTGCCGGTGATGTGTGGTGTCGGG 2330394 20 100.0 29 NNNNNNNNNN .................... TCGACGTGCCGGTGATGTGTGGTGTCGGG 2330443 20 100.0 23 NNNNNNNNNN .................... CCGACATCACGGGTGGTGTCGCC 2330486 20 100.0 1 NNNNNNNNNN .................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================== 4 20 27 GGTGTGGTGCATGCCAACGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [135,30] Score: 0.18/0.18 # # Final direction: R [0.55,0.78 Confidence: LOW] >NC_020540 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1258494 32 100.0 33 NNNNNNNNNN C............................... GAGTTTACTCGCTCAAATCAAGGTATGCGGACA 1258559 32 100.0 34 NNNNNNNNNN ................................ GCTGTGACATTGCGGGATGTAATCAAAGTAAAAA 1258625 32 100.0 33 NNNNNNNNNN ................................ TAAAGCAAACCTAGCAGAAGCAGAAAATGACTT 1258690 32 100.0 35 NNNNNNNNNN ................................ CTGATGTAATTGGTGATTTTCGTGATATGCTTTTT 1258757 32 100.0 1 NNNNNNNNNN .....G.......................... NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 5 32 33 ATTTCAATCCACTCACCCATGAAGGGTGAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:53.12%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [61.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [161,150] Score: 0/0.18 # # Final direction: R [0.27,4.87 Confidence: HIGH] >NC_020546 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================= ====== 796539 33 100.0 35 NNNNNNNNNN ................................. CGCACATGGGCGCAACGAAACGAGTCACGAGACGG 796607 33 100.0 33 NNNNNNNNNN ................................. ACTTCGTTGCTCAGGAATCGTAGGTTGTCGGGG 796673 33 100.0 34 NNNNNNNNNN ................................. CGTGTCGATGAAGAATGTCGGGATACCTCTGCCA 796740 33 100.0 35 NNNNNNNNNN ................................. TTCGGATATGCCGCTGGTCTTTTCCGTGACTGATT 796808 33 100.0 33 NNNNNNNNNN ................................. CCCTCCAGAAACCGCATGATACAGATTAGCCGC 796874 33 100.0 35 NNNNNNNNNN ................................. ATACGTGGCCGAATCAGGGGCGACCTGAATGGCGG 796942 33 100.0 34 NNNNNNNNNN ................................. CTCCCTTTAGGATTCCTGTTGGATTGGTGTCAGC 797009 33 100.0 34 NNNNNNNNNN ................................. TTCGAATGAGCCGGATAAGGAATATGATTTTATC 797076 33 100.0 33 NNNNNNNNNN ................................. ATTGGTCGGGCGCGGTTGGGATTATCGTCTGAC 797142 33 100.0 33 NNNNNNNNNN ................................. AGCGCGTCGCTTATCCAGTCGCTTGGTGGTGAC 797208 33 100.0 34 NNNNNNNNNN ............................TG..A TCCGAATATCCGGGAAACCAGAAAGGGGCGGCGA 797275 33 100.0 34 NNNNNNNNNN ................................. TGTGTCACGTTAGTCGGCATCATCAGTCGCCTTC 797342 33 100.0 34 NNNNNNNNNN ................................. ATTACCAAAGGAATCGGCGCATAATGTCCTGCGA 797409 33 100.0 34 NNNNNNNNNN ................................. ACGCAGTCAATCGAAGATAAATTTAACAGTCTGT 797476 33 100.0 34 NNNNNNNNNN ................................. CTCTCGTGGTTATGGTTGAGCCTATGTCCTGCGT 797543 33 100.0 33 NNNNNNNNNN ................................. CTCGCATTGTCATTTTAATTACCTCCTTAGTTT 797609 33 100.0 34 NNNNNNNNNN ................................. TGCAATGCGTCAACGATCGCGTCAACGATATTAG 797676 33 100.0 33 NNNNNNNNNN ................................. GTGCAGGAAAGGTTTTACGATTCTGTGATGGCG 797742 33 100.0 33 NNNNNNNNNN ................................. ATGGCACGATACACGGCGTATCAGCAAGTGTTT 797808 33 100.0 35 NNNNNNNNNN ................................. ATGAGCCGCCGTCGAATACAAGATGATTAAGAGAA 797876 33 100.0 32 NNNNNNNNNN ................................. TTCTAATCTTGTAGTCCATCCTGCTGGTACGG 797941 33 100.0 33 NNNNNNNNNN ................................. GTTGACTGCACGGTTGGCAAGGTGGACGTGTTC 798007 33 100.0 33 NNNNNNNNNN ................................. CTCGATCGTCACCACGGTTAATGACCGGCTGAA 798073 33 100.0 35 NNNNNNNNNN ................................. ACAATATCTGCTATGACCCGGACGAAATCCCGCTA 798141 33 100.0 33 NNNNNNNNNN ................................. CTGAGCCGCATAGCCATATGAGATTAGACGCAT 798207 33 100.0 34 NNNNNNNNNN ................................. GGCAAGGTGGACGTATCCTCGGATATGCCGCTGG 798274 33 100.0 33 NNNNNNNNNN ................................. TCATACATGCAACGCATTAGCTCGTACCGCGCA 798340 33 100.0 34 NNNNNNNNNN ................................. TTTGCTTGGCTCCGCATTCCGCATCTGCTCGATC 798407 33 100.0 33 NNNNNNNNNN ................................. ACCGTACAACACGCGCATCGAATCAAAGTCATA 798473 33 100.0 33 NNNNNNNNNN ................................. ATGGCGTTACGGTTGGACGTTCCGAGCCTGTTC 798539 33 100.0 33 NNNNNNNNNN ................................. TTGGCGAACTTGACCACGAGCGGGACGCCGATG 798605 33 100.0 35 NNNNNNNNNN ................................. TCGCAGAATCTGAGTGGAGATATCCTCAGAGAATT 798673 33 100.0 34 NNNNNNNNNN ................................. TCCGCCTCGCGACGCTCCTGCTCGGTGACCTGCA 798740 33 100.0 33 NNNNNNNNNN ................................. CGGTGGGCGTGTTGACGCCTGCGGTGAGCGTGA 798806 33 100.0 33 NNNNNNNNNN ................................. GACTTCGACCACCCGGACAAGTCGCTCGCGTTG 798872 33 100.0 33 NNNNNNNNNN ................................. GCCGGGTTGGGGTTTTGCGACAACACGGTGATG 798938 33 100.0 34 NNNNNNNNNN ................................. CACCATCGCTTGTCCCTTTTGTTTCTCCCTCACA 799005 33 100.0 35 NNNNNNNNNN ................................. ATGATTTTCACCCCCTTCCAATCAGGGAACGGACA 799073 33 100.0 33 NNNNNNNNNN ................................. ATGATTTCCGCGATGTAATCCGCCATGCCGCTT 799139 33 100.0 35 NNNNNNNNNN ................................. AAAAGTGCCGTGCTGAAGTCGCCGGAGATGACCGG 799207 33 100.0 34 NNNNNNNNNN ................................. CTTTTCGCGTCCACATAGCGCTGATGCCGCGATG 799274 33 100.0 33 NNNNNNNNNN ................................. TTTTTTGAGGAGTGAGAACAGATGGATATCAGC 799340 33 100.0 33 NNNNNNNNNN ................................. GTGAAAACCTTGCATACGGACACGGATTATAGT 799406 33 100.0 33 NNNNNNNNNN ................................. GGGTCGCCGTTCAACCTGTGGGCGAGGCAGCGC 799472 33 100.0 35 NNNNNNNNNN ................................. ACGAGTGCTTGGACGATTGACGGCACTTTAAACAT 799540 33 100.0 35 NNNNNNNNNN ................................. TCGGTGAGCACTTGAATCGTGTACGCGCAGTCATC 799608 33 100.0 34 NNNNNNNNNN ................................. ATCGAGCCAGCGATAGGAGCGACATATTTAAAAG 799675 33 100.0 34 NNNNNNNNNN ................................. AGCTTGTGCGCCATTGGTGCGTTGCATGGTCTTA 799742 33 100.0 33 NNNNNNNNNN ................................. TAAAAGGACGGCAAAACGTATTTCACGCAATCG 799808 33 100.0 34 NNNNNNNNNN ................................. ATGGAGAGTGCAAGAATAGCTTAGAAATCGACCA 799875 33 100.0 34 NNNNNNNNNN ................................. ACGCTTGTTGCGTTCGACACTGCACTCGCACGCG 799942 33 100.0 34 NNNNNNNNNN ................................. ATACCCGCGTACAAGCGGACGACACCGCCGAAAC 800009 33 100.0 34 NNNNNNNNNN ................................. CAGAACGCCACATCCCCTTTCACGGGGCTGTAGT 800076 33 100.0 35 NNNNNNNNNN ................................. TGAAGCATCAGTGGTACTTTTAATCTCGCCTTTTT 800144 33 100.0 35 NNNNNNNNNN ................................. ACGTCCTGCGCGGCCTGGCTAACTCTCAAACCAGC 800212 33 100.0 33 NNNNNNNNNN ................................. ATCAGCGTATCCGACACGCCCTGATCGATGACA 800278 33 100.0 35 NNNNNNNNNN ................................. TGGCGGTATACGCAAAATGTGTGGCAGAAGCCGAA 800346 33 100.0 34 NNNNNNNNNN ................................. ATCATCCCCACCACGCGCCTCAGTCAGCTCATCG 800413 33 100.0 34 NNNNNNNNNN ................................. TCGGCGTCTGCCATGCGAACGCCGACCGGCTGCT 800480 33 100.0 35 NNNNNNNNNN ................................. CTTCGGCTTGACTTCGTCATCCACGGTTTGGGTCT 800548 33 100.0 34 NNNNNNNNNN ................................. GCAAAACACCATAGCGGTCATCGTGAGGAACAGC 800615 33 100.0 34 NNNNNNNNNN ................................. ATTACCGAAGGGATCAGCGCATAATGTCCTGCGA 800682 33 100.0 33 NNNNNNNNNN ................................. CGGTCATGCGACGGTGAACGTGCAGGTCGCGGA 800748 33 100.0 34 NNNNNNNNNN ................................. CTCCGCACGCCTCTCGGGAGACCATGCGGCACGT 800815 33 100.0 33 NNNNNNNNNN ................................. CCTAGTCCTTTCCATCAGCCGCGAGCAATGTCG 800881 33 100.0 33 NNNNNNNNNN ................................. AGCGAGCACCGTCTGTATCCATGCGGACCGGTA 800947 33 100.0 34 NNNNNNNNNN ................................. GTGTTCTTGAATGCGGAGCTCGCCAACGGCAGTC 801014 33 100.0 34 NNNNNNNNNN ................................. TTCAACGGCATAGGCCACAGAATCGCCGACAAGT 801081 33 100.0 36 NNNNNNNNNN ................................. CGAGATAAAGGGAAGCCGCTGGAGGACTTGCAGAAG 801150 33 100.0 36 NNNNNNNNNN ................................. CCGCTCGAGTCGAACCCGGAATGCTACGAGGCGAAG 801219 33 100.0 34 NNNNNNNNNN ................................. AAGCATGCCGGGTATCTCGCAACGTCATTAAAAC 801286 33 100.0 33 NNNNNNNNNN ................................. AATTTCACCTGCATCAGCTTGCTTGTGGTGTGT 801352 33 100.0 34 NNNNNNNNNN ................................. AAGACACTGAGCACCCGTGGAGACAGGCGTCGCT 801419 33 100.0 33 NNNNNNNNNN ................................. CAGTTCATCCTGTTGCGCGGCATGCCCATGCCC 801485 33 100.0 34 NNNNNNNNNN ................................. ACCGTGAACGGGCCCATGCCGTCCGGCGTGCGGC 801552 33 100.0 34 NNNNNNNNNN ................................. TGGACAAGGTACGTCTCAAGGGCACCGACGATTA 801619 33 100.0 36 NNNNNNNNNN ................................. ACGAAGTGGGCTGAGGAACACGCCGACGATCTGCTG 801688 33 100.0 33 NNNNNNNNNN ................................. GACGTGGACGGCAAACATTATCGACCGACAAGC 801754 33 100.0 34 NNNNNNNNNN ................................. ATGAACGAGATGGTGTTTAATGTGATTGACGCAC 801821 33 100.0 33 NNNNNNNNNN ................................. GACCTGAACGGGCCGGATCTTTTCGCCGACACG 801887 33 100.0 33 NNNNNNNNNN ................................. ACCACCGTCGCCCCACCGCCCGTGGTACGAAGC 801953 33 100.0 33 NNNNNNNNNN ................................. CCGCACATGGCCGTGTACTTCGCACAGAACATC 802019 33 100.0 38 NNNNNNNNNN ................................. CACCATATCTCAGCCGTGTTCATGTGGAAAGCGGGTAT 802090 33 100.0 37 NNNNNNNNNN CG.T.CA.G.A.TG...AG.............. GGCAACAACGGGTTTCGGCAACCCAAACCAGCGCCGC 802160 33 100.0 33 NNNNNNNNNN ................................. AAGAAACCACGGGTCGCAAGTCTTCGGCAGATT 802226 33 100.0 34 NNNNNNNNNN ................................. AACATTTTTCGTACCGAAATGCGTATGGCATCCA 802293 33 100.0 35 NNNNNNNNNN ................................. ATCGGGGGTGCAGGCTGATGGATATCAGGTCTATG 802361 33 100.0 35 NNNNNNNNNN ................................. ACAGTCTACGATGGGCATGAGCTTGCTGGGATTGA 802429 33 100.0 33 NNNNNNNNNN ................................. CCGGCGCACCCGTCGTAGTCGTGCCCACCGTAA 802495 33 100.0 35 NNNNNNNNNN ................................. AAACAGTTCGGCCGCAAACCGCACAAAGGCGACAA 802563 33 100.0 34 NNNNNNNNNN ................................. AGTCTCTTCTTCCAATCATCAGATTCAGCCATTT 802630 33 100.0 33 NNNNNNNNNN ................................. ATCTGTGAGCCGACTTCTTTCAGATTCTGCGAG 802696 33 100.0 34 NNNNNNNNNN ................................. CGCGCTTGCCGAGTACCAGCTGGTCTGGCTGGTG 802763 33 100.0 33 NNNNNNNNNN ................................. CAACAACGGCGTGAGTTGAAATAGTAGCAGCGA 802829 33 100.0 34 NNNNNNNNNN ................................. GAGCCGTCTGCATTATGATTCACGCGGTGTGTAG 802896 33 100.0 34 NNNNNNNNNN ................................. TTCGGACTTGTCTGTATCGACCCCGAGAATGCGT 802963 33 100.0 34 NNNNNNNNNN ................................. GCGTCACAGACCAAGCAAGCCGCTGCTGAAGCTG 803030 33 100.0 34 NNNNNNNNNN ........A........................ TACTATGGGTGCCAGACATCGCGCTGCGAGACGA 803097 33 100.0 33 NNNNNNNNNN ................................. TCTGCGGTGCTCGACATTCTCAGCACGCCAACG 803163 33 100.0 31 NNNNNNNNNN ................................. GGCAAGACCAGCGAACGCGAATACCGCATCA 803227 33 100.0 1 NNNNNNNNNN .ATCGCT...CGTAT...G.............. NNNNNNNNNN ========== ====== ====== ====== ========== ================================= 101 33 33 ATCGCTCCCCGCATGGGGAGCGTGAGTTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [7,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-8.40,-8.20] Score: 0/0.37 # Array degeneracy analysis suggestion: F [3-24] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [61.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1132,49] Score: 0.18/0.18 # # Final direction: F [0.86,0 Confidence: HIGH] >NC_020800 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 4530049 31 100.0 37 CTAAGGGGGG ............................... AAATGCTTTCGACGCGCATAAAGCGCTGGCGCAGGAG 4530117 31 100.0 35 GGCGCAGGAG ............................... CTGTTCAAGCTCCGCCGCCTGATCCGCTTGCCGAG 4530183 31 100.0 35 GCTTGCCGAG ............................... GCGGATATGTGATTAGACCCTTTTACGACTTTCAG 4530249 31 100.0 34 CGACTTTCAG ............................... TCATTGAACCCAAGGACCACTTCGCAGGGCGACT 4530314 31 100.0 34 CAGGGCGACT ............................... TGTCGAGCGCGCACTGCTGCCGCGATGGCCGGAA 4530379 31 100.0 34 ATGGCCGGAA ............................... GGCTGGGAGCGTTACAAGTTTGAGCAGCCCGTAG 4530444 31 100.0 35 CAGCCCGTAG ............................... TGGTTCAGGGCTGGAAAGACTTGGATGCCCGCATC 4530510 31 100.0 34 TGCCCGCATC ............................... CTGACTATCCCTGCATAGGCCACGACCTGCGAGG 4530575 31 100.0 36 ACCTGCGAGG ............................... AAGAAGACCAGTCTGCGGCGTCGCGGCATCCTGGGG 4530642 31 100.0 34 CATCCTGGGG ............................... CTGAGTTCGTCGCCGTCCCGGTCGTCTGACGCGT 4530707 31 93.5 36 TCTGACGCGT T...........T.................. CATGCCATATGCGGCGAGATCGCACAGCAGAAGGAA 4530774 31 96.8 GCAGAAGGAA .G............................. AATTTAAACT ========== ====== ====== ====== ========== =============================== 12 31 34 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [5,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-6.90,-7.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [46.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [193,132] Score: 0/0.18 # # Final direction: F [5.68,0.37 Confidence: HIGH] >NC_020555 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1362505 36 100.0 30 NNNNNNNNNN A................................... TAGAAAAGCCGGTAATGGAAGTGTCGGTGG 1362571 36 100.0 30 NNNNNNNNNN .................................... TAAAAGACGATAAGGGACGAACCAATGATG 1362637 36 100.0 30 NNNNNNNNNN .................................... AAAAGAAAAACGACGCCTTCGGCGGCGATA 1362703 36 100.0 30 NNNNNNNNNN .................................... TTTGTTGTCTTTTGTAGCATAAAGCTCTTG 1362769 36 100.0 30 NNNNNNNNNN .................................... ACAAATTCCAATAAGATGAGCGATTTCGGC 1362835 36 100.0 31 NNNNNNNNNN .................................... TTTTGGACTTGGTGCTATCCCCGATGTTGTG 1362902 36 100.0 30 NNNNNNNNNN .................................... TAATCCCGCTATTATAATTATTTGTGTCAT 1362968 36 100.0 30 NNNNNNNNNN .................................... ATACGCACATTTATAAATGATGAGACATAT 1363034 36 100.0 30 NNNNNNNNNN .................................... AAAATCATTACGAGTAGAATTCTCAAATAG 1363100 36 100.0 30 NNNNNNNNNN .................................... AGAGGATTTATTTGAGTCTCTTGCTCCTAT 1363166 36 100.0 31 NNNNNNNNNN .................................... GAGATATGGGAGGACATCAGCGGGGATTTTG 1363233 36 100.0 30 NNNNNNNNNN .................................... CTAAGCTTTAATGTGCCATCAGAATGATTT 1363299 36 100.0 30 NNNNNNNNNN .................................... TCCTTTTGATAAGCATTATAGTAACTTTGT 1363365 36 100.0 31 NNNNNNNNNN .................................... CTATGTTACTACTAAAAAATACAGGTGGGAC 1363432 36 100.0 30 NNNNNNNNNN .................................... ATTGTCAATGTCCAAGTCGTAGTCGTACGT 1363498 36 100.0 30 NNNNNNNNNN .................................... GGGAGTCCTGCGAGTCAAACAATCACTAGC 1363564 36 100.0 30 NNNNNNNNNN .................................... AAATTAAGGGCAGATACAATGCCTGCGCTT 1363630 36 100.0 30 NNNNNNNNNN .................................... GCCGATTTGTTTTTTTGCAAAAAGAACCTC 1363696 36 100.0 30 NNNNNNNNNN .................................... TCTGATCAAAGAGTTAATGTTGTTTTGCAT 1363762 36 100.0 31 NNNNNNNNNN .................................... AGAAGCAAGGCGGAGGTCGCGGATGTCTAAA 1363829 36 100.0 30 NNNNNNNNNN .................................... CTTGGACTCGGTGCAATCCCCGATGTCGCT 1363895 36 100.0 30 NNNNNNNNNN .................................... AATTGGAGAATCTTTTCATTTTCTTGGAAG 1363961 36 100.0 30 NNNNNNNNNN .................................... GATTCTAGGTGTGGAATGTGTGAGTGTATC 1364027 36 100.0 30 NNNNNNNNNN .................................... TACATTTCGTGGGGATATATACCGCTTCCT 1364093 36 100.0 30 NNNNNNNNNN .................................... TTTTGATTTGCTTTTGTCGATAACTTCATC 1364159 36 100.0 31 NNNNNNNNNN .................................... ATAATTTAGATTCTCCTTTTTGAAATTTTTA 1364226 36 100.0 31 NNNNNNNNNN .................................... ATAATTTAGATTCTCCTTTTTGAAATTTTTA 1364293 36 100.0 30 NNNNNNNNNN .................................... TCTAAAGTGTAATGGAATGCTGTTTCTTAT 1364359 36 100.0 30 NNNNNNNNNN .................................... GGAGCGGTGATTGGAGCAAGTATGCTAAGC 1364425 36 100.0 30 NNNNNNNNNN .................................... AAAAGTCGTTCGTAGTTTTCTTTTTCTAAT 1364491 36 100.0 30 NNNNNNNNNN .................................... AGTAATTCTATATTTCAAATAAAGTTTTAA 1364557 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 32 36 30 GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:69.44%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [226,159] Score: 0/0.18 # # Final direction: R [0,0.78 Confidence: HIGH] >NC_020559 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3105878 36 100.0 38 AGTCGTCGTA .................................... TCGGGCACGGCCGAAACACCGCGCGAAGGGCGGTTCAA 3105952 36 97.2 40 GGCGGTTCAA .................T.................. TGGGAGGATGTCACTCGGACATAGCTGTCATCGGCGGTGT 3106028 36 97.2 40 TCGGCGGTGT ................................G... ATGGAGCAGTAGCGTGGCTGTGGTGTGGCGGGCGATATGC 3106104 36 100.0 37 GGCGATATGC .................................... TGCTGCACCTCCCGCACCCGGTGCGATTCTGCGTCCA 3106177 36 97.2 36 TCTGCGTCCA .............................C...... CCCGATAGTCGCGCTCGTCCATGTCCCACCATGAGG 3106249 36 100.0 35 CACCATGAGG .................................... TACCTGATAGAAGCCGGAAAGCTCCGTGCCGTCAG 3106320 36 100.0 38 GTGCCGTCAG .................................... AGGGCACTGGACCTGTATGAGGCACAGATGGCGTACTA 3106394 36 100.0 40 TGGCGTACTA .................................... CCGGATCGGTTACCCACGCCGATTTACTGGCCATCGTCGG 3106470 36 100.0 35 CCATCGTCGG .................................... ACTTGCGCGCACAACGCATCCGCCATCCACGGGGC 3106541 36 100.0 37 TCCACGGGGC .................................... CTGAAAGGGGGACTGTGGACGAGTTCGCGCTCAAAAT 3106614 36 100.0 38 CGCTCAAAAT .................................... TTGAACACGCCGATACCTATTTGGTCGGGAGTGATAAA 3106688 36 100.0 GAGTGATAAA .................................... TGACAGGGTGCGGTGGTCGCTGATCGGCTCCCCGA ========== ====== ====== ====== ========== ==================================== 12 36 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [150,112] Score: 0/0.18 # # Final direction: R [0,1.15 Confidence: HIGH] >NC_020559 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3108130 36 100.0 40 NNNNNNNNNN CA.G...GGG.GGT..A................... TCGCGGCGAGCACGTCTCACCCAGCAGGCGGTGAGGTTGG 3108206 36 100.0 39 NNNNNNNNNN .................................... ACGGACGAGCTGGACCGCATCAGCGATGCTGAGCTGAGG 3108281 36 100.0 37 NNNNNNNNNN .................................... TTGTCTCAATCGTGCCGTCTGCGGTGACACGCTCCAA 3108354 36 100.0 40 NNNNNNNNNN .................................... TCGACGATTGGGACATCGACATCGACGCGATCGTCGACGA 3108430 36 100.0 41 NNNNNNNNNN ..........T......................... GTGATCTTCTCTCCTGGCGAGGTCAAGGAAATCGATGTGGA 3108507 36 100.0 36 NNNNNNNNNN .................................... CACCAGGATCAGCGCCAAGCCAGTTAGCGCAATCCA 3108579 36 100.0 36 NNNNNNNNNN .................................... CTCCCGGACCATCTGCAGCTCGCCCGGGTCCATGCG 3108651 36 100.0 37 NNNNNNNNNN .................................... CGGAGTCATCCGCGCGGGCCGGCGCGATTGTTGCCGG 3108724 36 100.0 36 NNNNNNNNNN .................................... TGGCGATTTACGACGCTGACGGGAACTCGTGCGAAT 3108796 36 100.0 25 NNNNNNNNNN ................................TCCG CGAAATTCACTGCGCGTTATTCAAG 3108857 36 100.0 42 NNNNNNNNNN .................................... CCGAGCCGACCATCCGCGATCACACCGAAAGGGTTGGCGCAA 3108935 36 100.0 36 NNNNNNNNNN .................................... ACGTGGGGAGAGGGAATGGCAATGATGGTCGACGAA 3109007 36 100.0 40 NNNNNNNNNN .................................... CTCGGACAGCATCTCCCCGGGCGGGCAGCAGATATCCCAT 3109083 36 100.0 41 NNNNNNNNNN .................................... CGACCCGTGGCCGCCAGGTTGCCGCCGCCGTTGCTCACCTG 3109160 36 100.0 37 NNNNNNNNNN .................................... CCGGAAGTCAACTAGAGCGGGTGTCGAACGCTGCCCG 3109233 36 100.0 35 NNNNNNNNNN .................................... ATGCGAATCCGCTGTCAGCACATGGGATTCCGAGT 3109304 36 100.0 37 NNNNNNNNNN .................................... CTAGGCGGCCCCGGCGAGGCTGGGGGCGGTTTCACGC 3109377 36 100.0 38 NNNNNNNNNN .................................... CAGCGCAGACGGCAGCCCCGAGTACTCGCTCTCCTCAG 3109451 36 100.0 37 NNNNNNNNNN .................................... AGGCTGAAATTGAAGCCGGAAATGACGACGCATTGGT 3109524 36 100.0 35 NNNNNNNNNN .................................... CTAAGCCCGCTAATCCCGCACAAGTGGTCAGAAAA 3109595 36 100.0 39 NNNNNNNNNN .................................... CTGATGATTGGTCGGCGTATGACGTGCTACTGAGGTGTT 3109670 36 100.0 34 NNNNNNNNNN .................................... TAGAAGGCGATCACTGGAAGCACGGCGCTTGCGA 3109740 36 100.0 36 NNNNNNNNNN .................................... TTGGTCAAAAGCTGTCGCCCAAGCATGAGGCAAAAA 3109812 36 100.0 41 NNNNNNNNNN .................................... ACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTATG 3109889 36 100.0 38 NNNNNNNNNN .................................... GTGCAAGAATTCCGGGTTGCAGTGCAACACGGTTTTAA 3109963 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 26 36 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [36,50] Score: 0/0.18 # # Final direction: R [0,1.42 Confidence: HIGH] >NC_020559 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3108206 36 100.0 39 GTGAGGTTGG .................................... ACGGACGAGCTGGACCGCATCAGCGATGCTGAGCTGAGG 3108281 36 100.0 37 TGAGCTGAGG .................................... TTGTCTCAATCGTGCCGTCTGCGGTGACACGCTCCAA 3108354 36 100.0 40 CACGCTCCAA .................................... TCGACGATTGGGACATCGACATCGACGCGATCGTCGACGA 3108430 36 97.2 41 TCGTCGACGA ..........T......................... GTGATCTTCTCTCCTGGCGAGGTCAAGGAAATCGATGTGGA 3108507 36 100.0 36 TCGATGTGGA .................................... CACCAGGATCAGCGCCAAGCCAGTTAGCGCAATCCA 3108579 36 100.0 36 GCGCAATCCA .................................... CTCCCGGACCATCTGCAGCTCGCCCGGGTCCATGCG 3108651 36 100.0 37 GGTCCATGCG .................................... CGGAGTCATCCGCGCGGGCCGGCGCGATTGTTGCCGG 3108724 36 100.0 36 TTGTTGCCGG .................................... TGGCGATTTACGACGCTGACGGGAACTCGTGCGAAT 3108796 36 88.9 29 TCGTGCGAAT ................................---- TCCGCGAAATTCACTGCGCGTTATTCAAG 3108861 36 100.0 42 GTTATTCAAG .................................... CCGAGCCGACCATCCGCGATCACACCGAAAGGGTTGGCGCAA 3108939 36 100.0 36 GTTGGCGCAA .................................... ACGTGGGGAGAGGGAATGGCAATGATGGTCGACGAA 3109011 36 100.0 40 GGTCGACGAA .................................... CTCGGACAGCATCTCCCCGGGCGGGCAGCAGATATCCCAT 3109087 36 100.0 41 GATATCCCAT .................................... CGACCCGTGGCCGCCAGGTTGCCGCCGCCGTTGCTCACCTG 3109164 36 100.0 37 TGCTCACCTG .................................... CCGGAAGTCAACTAGAGCGGGTGTCGAACGCTGCCCG 3109237 36 100.0 35 ACGCTGCCCG .................................... ATGCGAATCCGCTGTCAGCACATGGGATTCCGAGT 3109308 36 100.0 37 GATTCCGAGT .................................... CTAGGCGGCCCCGGCGAGGCTGGGGGCGGTTTCACGC 3109381 36 100.0 38 GGTTTCACGC .................................... CAGCGCAGACGGCAGCCCCGAGTACTCGCTCTCCTCAG 3109455 36 100.0 37 CTCTCCTCAG .................................... AGGCTGAAATTGAAGCCGGAAATGACGACGCATTGGT 3109528 36 100.0 35 ACGCATTGGT .................................... CTAAGCCCGCTAATCCCGCACAAGTGGTCAGAAAA 3109599 36 100.0 39 GGTCAGAAAA .................................... CTGATGATTGGTCGGCGTATGACGTGCTACTGAGGTGTT 3109674 36 100.0 34 CTGAGGTGTT .................................... TAGAAGGCGATCACTGGAAGCACGGCGCTTGCGA 3109744 36 100.0 36 GCGCTTGCGA .................................... TTGGTCAAAAGCTGTCGCCCAAGCATGAGGCAAAAA 3109816 36 100.0 41 GAGGCAAAAA .................................... ACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTATG 3109893 36 100.0 38 ACCCTCTATG .................................... GTGCAAGAATTCCGGGTTGCAGTGCAACACGGTTTTAA 3109967 36 100.0 ACGGTTTTAA .................................... TCTATGGACA ========== ====== ====== ====== ========== ==================================== 25 36 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [35.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [112,46] Score: 0.18/0.18 # # Final direction: R [0.18,1.42 Confidence: HIGH] >NC_020561 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1616584 36 100.0 30 NNNNNNNNNN .................................... CGGGCAAGACGGTTGGGCGACGCGCGTTTG 1616650 36 100.0 30 NNNNNNNNNN .................................... GAAGTTCGCCGGGTCTACGCACGCGCTTTC 1616716 36 100.0 30 NNNNNNNNNN .................................... CCTATGTCCGTAACAACCCGGACGTGGCCG 1616782 36 100.0 30 NNNNNNNNNN .................................... AGTGATGACTGACATCGCAACGATAGCGGC 1616848 36 100.0 30 NNNNNNNNNN .................................... CGAACGTCGCCCTGTAACAACAGCCCTGAA 1616914 36 100.0 30 NNNNNNNNNN .................................... AGCCCGCTGCAAAGGCGGATTCCGCGACGC 1616980 36 100.0 30 NNNNNNNNNN .................................... CCGAGTTGCTCGACAGCCAACGCGCTTTAG 1617046 36 100.0 30 NNNNNNNNNN .................................... GTATCTGTGCGCCAGTCGTACATTGTTGAC 1617112 36 100.0 30 NNNNNNNNNN .................................... CCTTCCACGCGTCAAGCTCACCTTCGAACC 1617178 36 100.0 30 NNNNNNNNNN .................................... TTTGGCGAAGTCCGCCCACATATGCGCGCA 1617244 36 100.0 30 NNNNNNNNNN .................................... CGCGGCGAGACCCACGTCAACAACCTGCTG 1617310 36 100.0 30 NNNNNNNNNN ....C............................... GCCCATCCCGAGCTCGCGCTTGTAGCGCAT 1617376 36 100.0 30 NNNNNNNNNN .................................... GATTCTTGCCGCGATGGCGGCGGCCCAGGC 1617442 36 100.0 30 NNNNNNNNNN .................................... ACTCGCTGCGAGGGGACGGGGAGAGGAAGG 1617508 36 100.0 30 NNNNNNNNNN .................................... CCCCCAGGGCGCATAGCCAAGCCGGCCCAC 1617574 36 100.0 44 NNNNNNNNNN .................................... AAGATATCACACAGGCGGTATTGCTGGAGGCGGTATTGCTGGTT 1617654 36 100.0 30 NNNNNNNNNN .................................... GAAACATTCGATGCGCCAGATCCAGATGAT 1617720 36 100.0 30 NNNNNNNNNN .................................... CTATGTTGACGCGCAGTTCGGTTTGGCCAA 1617786 36 100.0 30 NNNNNNNNNN .................................... CCAGCGGACGGACGCATATGGGCAAGCGGC 1617852 36 100.0 30 NNNNNNNNNN .................................... CCTGTGCGCCCGCGCGAGGATGACCATAAT 1617918 36 100.0 31 NNNNNNNNNN .................................... TCCTTTTACGCGATGAGGGCAGTGAGCCCGG 1617985 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 22 36 30 AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [11,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [45.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [60,91] Score: 0/0.18 # # Final direction: F [1.01,0 Confidence: HIGH] >NC_020813 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 898723 36 100.0 30 NNNNNNNNNN .................................... TGTTGTATTTGTTTTTTTCCTTGGTCCACA 898789 36 100.0 30 NNNNNNNNNN .................................... TTCATTGATGAACTGTATGAATACTTTGGA 898855 36 100.0 30 NNNNNNNNNN .................................... TCGTCGGTAGCGACGGTGTTCATGGTTTCA 898921 36 100.0 30 NNNNNNNNNN .................................... TTGCAAGGGTCGGGGGATCGGGGGTTAAAC 898987 36 100.0 30 NNNNNNNNNN .................................... CAAACTCAGTAAAACATTTGCAATACATCA 899053 36 100.0 30 NNNNNNNNNN .................................... ACAAATTTCAGCGAACATCGACAAGGTTGT 899119 36 100.0 30 NNNNNNNNNN .................................... CGTCAATGAAGACAGTTGTCACAGCCGTAG 899185 36 100.0 29 NNNNNNNNNN .................................... AAGCATTTAAAAAGAATCATTGAGCGAAA 899250 36 100.0 29 NNNNNNNNNN .................................... AAGCATTTAAAAAGAATCATTGAGCGAAA 899315 36 100.0 30 NNNNNNNNNN .................................... CTGCTGCGACCATGTTGAAAGTTTCACTCA 899381 36 100.0 30 NNNNNNNNNN .................................... TTACACAATTCAACTATATGCCAGTTCCAA 899447 36 100.0 30 NNNNNNNNNN .................................... AGCTGTTGCAAAATCAGTCAAAATGAAAAC 899513 36 100.0 30 NNNNNNNNNN .................................... TGATCGCAGTATTAAAGGGTTTAGAGATGT 899579 36 100.0 30 NNNNNNNNNN .................................... CGTGATCTTCTGGCCCGTTTCTTTTAAATA 899645 36 100.0 29 NNNNNNNNNN .................................... TATATTGAACATGGCAAAAAATACCGCCA 899710 36 100.0 30 NNNNNNNNNN .................................... ACGGTTCCGTTTTTGAGGGGACGAAAGTTA 899776 36 100.0 30 NNNNNNNNNN .................................... GAGATCACGGATCATCCTGATTTGGATCTG 899842 36 100.0 30 NNNNNNNNNN .................................... AAATAGGCACAGATGGCTTTGGCGTTCTCT 899908 36 100.0 30 NNNNNNNNNN .................................... GCTTCTCAAGCGAATCAGCGAGCCGCTTGC 899974 36 100.0 30 NNNNNNNNNN .................................... CGAGCTCGCTAAACTATTAGATCATCAGAT 900040 36 100.0 30 NNNNNNNNNN .................................... TGACTTTTTTTGTAAGCCTACTTAGTTTCC 900106 36 100.0 30 NNNNNNNNNN .................................... GAGAGACCAGAGAGGTCTAATCTAGGGGTA 900172 36 100.0 30 NNNNNNNNNN .................................... ATATGGAAAAAGAATGTGCATCATGCGGCG 900238 36 100.0 30 NNNNNNNNNN .................................... CTTAGAGGGTCACGAGATGCTCGATCTACT 900304 36 100.0 30 NNNNNNNNNN .................................... CAACAGAGATCGCCTCTCTGATGTGGCTGA 900370 36 100.0 30 NNNNNNNNNN .................................... AGAGGAAAAAGAAATACAGGACATAATGAG 900436 36 100.0 30 NNNNNNNNNN .................................... AATGGGCTTACAAAGCTCATTACACCGCCG 900502 36 100.0 30 NNNNNNNNNN .................................... GGCCGTCTCGAGGGTGATGAATATGTTGCT 900568 36 100.0 30 NNNNNNNNNN .................................... GCGCCGGTCCAATGGTCCAAACATTTTGTC 900634 36 100.0 29 NNNNNNNNNN .................................... TGATTCCCAAACACAAAAAAAGTATTTTT 900699 36 100.0 30 NNNNNNNNNN .................................... AAGGAGTCTCCGTGAAAACATACATCAAAG 900765 36 100.0 30 NNNNNNNNNN .................................... CCAGCTTAAAATTGTAATAAACCCGCCCTT 900831 36 100.0 30 NNNNNNNNNN .................................... TTAGATTGGCTTCATATCTCACCTCCACAA 900897 36 100.0 31 NNNNNNNNNN .................................... TTGGACCTTTAGCCTTGGCGTTTATAAGCCA 900964 36 100.0 29 NNNNNNNNNN .................................... TGCACAGAATCGATGGCCCCGGCCATTTA 901029 36 100.0 30 NNNNNNNNNN .................................... TAAAAGGTGAGACGTGGTTCTTGAATGGAT 901095 36 100.0 30 NNNNNNNNNN .................................... TTGCGCGAGTTACCAAGAGCAGCCGTGTCG 901161 36 100.0 30 NNNNNNNNNN .................................... AATTATACACAGGTTGTTCACCTAAGTGAG 901227 36 100.0 30 NNNNNNNNNN .................................... TTGTGCAAGCCGCTTGCTTAAAAGTAACAT 901293 36 100.0 30 NNNNNNNNNN .................................... CCACCAGAACTTCTTACCCTCTGATGACCG 901359 36 100.0 30 NNNNNNNNNN .................................... GTTTCTCGTTGTCCTAAATAAGACAAGCCA 901425 36 100.0 30 NNNNNNNNNN .................................... GACTTTTAGCTGGTTGTGGTTGTTGCATAC 901491 36 100.0 30 NNNNNNNNNN .................................... GGCCTTTAGCGGTATCGCCTGCAATCCCTT 901557 36 100.0 30 NNNNNNNNNN .................................... CCATTTTCAAAGAAGTCTCGTCGTAATTCA 901623 36 100.0 30 NNNNNNNNNN .................................... AAAAATCGACTTGAGTGAAAGGTTATATGC 901689 36 100.0 30 NNNNNNNNNN .................................... AGCTCGCTACAGTTTAAAAAAATTAGTACA 901755 36 100.0 30 NNNNNNNNNN .................................... GTTAATTATGTGATTAATGATAGATAATTG 901821 36 100.0 30 NNNNNNNNNN .................................... CAGACGTTTACACGCCAGAGGGCGAAGACA 901887 36 100.0 30 NNNNNNNNNN .................................... TGAAAAAAAATTTATATGCAATCCGTGACA 901953 36 100.0 30 NNNNNNNNNN .................................... ATTGCGAGTATTACGGCGGCAAGCTAGCCC 902019 36 100.0 30 NNNNNNNNNN .................................... AAACATTCAGCTTAGCAAGAAGTTTTCTGT 902085 36 100.0 30 NNNNNNNNNN .................................... AGTATTTTGAAAAAACAGAAGAGTTTAACA 902151 36 100.0 30 NNNNNNNNNN .................................... CATCTATCCCATCAGGAAAGTACTTTCTAC 902217 36 100.0 30 NNNNNNNNNN .................................... AGCGCTTCATCAAAATGAACTCAAGCCAGA 902283 36 100.0 30 NNNNNNNNNN .................................... TTTTCGCCTTCAGCAGTTTGAACCACCTCA 902349 36 100.0 29 NNNNNNNNNN .................................... TTCGTTTTAATCATAGAATTCTCCTTTTA 902414 36 100.0 30 NNNNNNNNNN .................................... GAAGATGGACGACGCGATCAAAGAGTTTTC 902480 36 100.0 30 NNNNNNNNNN .................................... TCGAGTGTCGGTCTTCGATCTATGCCAGCA 902546 36 100.0 30 NNNNNNNNNN .................................... ATTGACAATAAATACATAAAACGATGAGCA 902612 36 100.0 30 NNNNNNNNNN .................................... GCCTTGATGAAAACACCGATGCCGCCAAGA 902678 36 100.0 30 NNNNNNNNNN .................................... GGCTCAGGCATAATATATGCCAGAGTAATA 902744 36 100.0 30 NNNNNNNNNN .................................... CAGCGATCGAGCCAGTATCGCTAACTGAAG 902810 36 100.0 30 NNNNNNNNNN .................................... TCGATCAACACAGTTGAAAATGGTGCGACA 902876 36 100.0 30 NNNNNNNNNN .................................... CTTATTTAAATTTTACAAAGGAGATTGCAT 902942 36 100.0 30 NNNNNNNNNN .................................... TGTCTTGCCTGGTTGGATAAAATTTTTCAT 903008 36 100.0 29 NNNNNNNNNN .................................... AAGTAGGACGTTTAAACAAATCTGATTAC 903073 36 100.0 30 NNNNNNNNNN .................................... TTTATTACGCGAATCGTGCGAAGGCTAACA 903139 36 100.0 30 NNNNNNNNNN .................................... CCCTAGTCGCAACCCTCGCAAGCAAGGATC 903205 36 100.0 30 NNNNNNNNNN .................................... GATAAAGTAATGTTTTTGGCTGACGATAAT 903271 36 100.0 30 NNNNNNNNNN .................................... TTTTATGTATTTATTGCACAGACAGTAAAT 903337 36 100.0 30 NNNNNNNNNN .................................... ATTTGTCCGCATTGGTTGCAGGCGGTCATA 903403 36 100.0 30 NNNNNNNNNN .................................... AGAGGGGGCTGCGCATCGTTGGTATGGAGC 903469 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 73 36 29 GTTCTGATTGGCTCACAGATTCCCATCTGTTATTCT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.60,-6.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [194,72] Score: 0.18/0.18 # # Final direction: R [0.18,0.37 Confidence: MEDIUM] >NC_020814 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1024111 30 96.7 36 ATAGAAGATT .......................G...... TCTTCAAGTCGGCGTCACGCCGATATTCGAGGAGGA 1024177 30 96.7 39 TCGAGGAGGA .......................G...... TTAAACAATGATGGTGTAAAGTCAAACTCTTTAATCAAA 1024246 30 100.0 34 TTTAATCAAA .............................. AAATTAGGGAAATAATGAATCAAATATTAAAATA 1024310 30 100.0 37 TATTAAAATA .............................. TTCCTTCTTGTGTGTCGCTTTCTTGTGTGGTATCATT 1024377 30 96.7 37 TGGTATCATT ..............C............... ACATTGACATCAAAACTAATAAAGTGCCGATTATGGA 1024444 30 100.0 38 CGATTATGGA .............................. AAGATTAAAAATTGGGGCTTTGTGATAAAAAACAAACT 1024512 30 100.0 AAAACAAACT .............................. ACCAAAATGA ========== ====== ====== ====== ========== ============================== 7 30 36 GTTTCAATCCCCTATAGGTACAAACAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.10,-1.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-1] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [178,394] Score: 0.18/0.18 # # Final direction: R [0.27,5.05 Confidence: HIGH] >NC_020814 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1088919 29 100.0 39 TGATTTCTGG ............................. ACTTATGCAAAAGTATCTATTACATTAGAACTATCAAAC 1088987 29 100.0 40 ACTATCAAAC ............................. CCTGACAAAAATGAGAGCATAACACTTCCTACTTTTGCAA 1089056 29 100.0 36 ACTTTTGCAA ............................. TTATCACACGTGCAAGTGTTTTGTGTTTTGATATGA 1089121 29 100.0 35 TTTGATATGA ............................. TTGTCTCGTAACATTAAAATTCGTTGGAGTTGTAT 1089185 29 100.0 38 GGAGTTGTAT ............................. TCTTCAAAGCATACGTCAATAGTCTGCCAGCTTTGAGA 1089252 29 100.0 37 AGCTTTGAGA ............................. CTAAATTTTGAAAGTGTGGAGGATATGAAATCTTTTT 1089318 29 100.0 37 AAATCTTTTT ............................. ATTTCTTGAGATAATTTGATGATAGAAATATTTTTCT 1089384 29 100.0 36 ATATTTTTCT ............................. GTTAAAGAATCGTTTGAAAAACAGCAAATAGCAGAA 1089449 29 100.0 35 AATAGCAGAA ............................. ATCTCCTACAGCACTCCATTGATAATATGTTATTT 1089513 29 100.0 36 TATGTTATTT ............................. TTTGCAGTTAGCTTCTTCAATAGATTGATGTTTATA 1089578 29 100.0 36 GATGTTTATA ............................. TTACAAGTTTGTAAAACATCTCTTAAAAGCTTGTTT 1089643 29 100.0 38 AAGCTTGTTT ............................. TCGCACAGCTAAACAGCAACAGACTACTTGCTAAAATA 1089710 29 100.0 39 TGCTAAAATA ............................. AACTCAACATCATGCAAATCTGGGACTGCTTCTTTTTGC 1089778 29 100.0 40 TTCTTTTTGC ............................. CCAAAATATACTTGATAAAAACGATAAACAAGCACATTCG 1089847 29 100.0 37 AGCACATTCG ............................. TTATCTCATCTTTTTGTAGGTATCTCAATACTCCTTG 1089913 29 100.0 38 ATACTCCTTG ............................. TTTTTTAGCATCACTTTTTAACGATGCATTAGGTTTAA 1089980 29 100.0 36 TTAGGTTTAA ............................. TTGTTGGATAAGTGATTTTTACTTTGTACTTCATGG 1090045 29 100.0 37 TACTTCATGG ............................. GAAGCTGTCAATCTAAACACTACTTTGTAATTATTTG 1090111 29 100.0 36 TAATTATTTG ............................. TTTTGCATCAAGCGTATCAGGAACCAAAACTTTCGC 1090176 29 100.0 39 AAACTTTCGC ............................. GCACTTGCAAGTGCCACTTTGCGAGCCAATGCGAATAGA 1090244 29 100.0 36 TGCGAATAGA ............................. TTTAAAATGGCGGAAAGTTCTTGCGATCTGTCTAGT 1090309 29 100.0 37 TCTGTCTAGT ............................. ATTAGAGCTTTGTCTTTTTTCAAGAAAGACTCTATTC 1090375 29 100.0 36 GACTCTATTC ............................. TTCCTTGGCGCTCTTTCTACTCTTGATATCACAGAA 1090440 29 100.0 37 TATCACAGAA ............................. TTTAGAAGAGCTTCAAGATTAAGTTGCTTTTCCATCT 1090506 29 100.0 36 TTTTCCATCT ............................. AAATAGCAGCCCAGCTCCAACCCCACTGTCTTTCAG 1090571 29 100.0 36 TGTCTTTCAG ............................. ATGTCAACATGTATTGGTCAAAAGCTGAAGGAAGGC 1090636 29 100.0 37 GAAGGAAGGC ............................. TGAGCCATATTCTCAGAGATTGGCTGGTGTAATAGCA 1090702 29 100.0 36 TGTAATAGCA ............................. GACGGTGTGCGTGGTCTTACGGGGGATGTCATTTTA 1090767 29 100.0 38 TGTCATTTTA ............................. GACAAAGACTTGATTGAAGATTTGCACTCAGTCAAAAA 1090834 29 100.0 37 CAGTCAAAAA ............................. CGTTGAGTTGTGAGTATCACTTTGATATTTTGCATGA 1090900 29 100.0 36 TTTTGCATGA ............................. TATTCTATTTGCAATCTCTTCAGGCTTGAGGGCTCT 1090965 29 100.0 36 TGAGGGCTCT ............................. CTTAATCACTTCAAGCCGCAGATGTGTATCTCCTTG 1091030 29 100.0 36 TATCTCCTTG ............................. TAGAGCATTTGCACTCATAGATGCTCCAGTAGGACT 1091095 29 100.0 37 CAGTAGGACT ............................. TAAGTTTTTGCTTAAAACTTCTTCTAAAGAAGCTGCA 1091161 29 100.0 36 AGAAGCTGCA ............................. AACACAGACGCAAACCTTTTAAACGCAAACGGTGTA 1091226 29 100.0 42 AAACGGTGTA ............................. ACGTTTTTCACACGACCTAACGCATCTATGTGTTTCATCTGA 1091297 29 100.0 37 TTTCATCTGA ............................. ACAATTGCTGAAAAAGTGGACGATGACAAGAAGAAGA 1091363 29 100.0 36 AAGAAGAAGA ............................. GAAGTAAACAAAGCTCTGTTGCTTCTGGCGGCTTCT 1091428 29 100.0 36 GGCGGCTTCT ............................. CTACCAATCGCATCTACGCCTATCACCTTCCAACCA 1091493 29 100.0 37 CTTCCAACCA ............................. TTGATTACAAACATTATCAACGCACTTGTAAAACAAA 1091559 29 100.0 37 GTAAAACAAA ............................. GAGTAAGCGTTTTTTTAACAGAATGGAGGTCTTCTAT 1091625 29 100.0 37 GGTCTTCTAT ............................. TAGAGCATTTGCATTAATAGATGCTCCTGTGGGACTT 1091691 29 100.0 37 TGTGGGACTT ............................. GCGTTTGAAAATAGTATTTCTTTTGTGTAAAAATAGG 1091757 29 100.0 36 TAAAAATAGG ............................. TTTAAAATGGCGGAAAGTTCTTGCGATCTGTCTAGT 1091822 29 100.0 37 TCTGTCTAGT ............................. ATTAGAGCTTTGTCTTTTTTCAAGAAAGACTCTATTC 1091888 29 100.0 41 GACTCTATTC ............................. ATATGATACTTTTAGCACTTGCCCGAGCCAGTAGCTAATGG 1091958 29 100.0 36 TAGCTAATGG ............................. ATTACTGAAAAATTGCAACAATTATTAAACTACATG 1092023 29 100.0 39 AAACTACATG ............................. CTTCTAAGGTTTGATGTAGTCTTTCAATCATTTGAGGCA 1092091 29 100.0 36 ATTTGAGGCA ............................. AGCATCGGGGCGTTTATAAATACCGATGCAAAAACT 1092156 29 100.0 38 TGCAAAAACT ............................. ACAACAAGCGTTTGATAAACGTTAGCGGGAGTTGTTGA 1092223 29 100.0 GAGTTGTTGA ............................. TTTCATTCTA ========== ====== ====== ====== ========== ============================= 51 29 37 GTTTCTAATTAACCGTGTGGAGTTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.07%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.70,-0.40] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [236,4] Score: 0.18/0.18 # # Final direction: F [0.18,0 Confidence: MEDIUM] >NC_020815 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 5157634 31 100.0 36 AGGCGATCAT ............................... TCGAGCGCATCGATGACGGTCACCCATCCCCCAATG 5157701 31 100.0 36 TCCCCCAATG ............................... GTGCCACCGACAGCGACGCACGTGGACCTGCAGATC 5157768 31 100.0 34 CCTGCAGATC ............................... CTCTCTCACGCCGCGCGTGCGAGATCCTGCGTGC 5157833 31 100.0 36 TCCTGCGTGC ............................... GCAGACTGCCGAGGCCGGCATGCTGGAGGGGCGCCT 5157900 31 100.0 37 AGGGGCGCCT ............................... GGGTTAACAACGCCTTGAAACGGCTTTGCCGCGACGC 5157968 31 100.0 35 GCCGCGACGC ............................... GCCATCATGCTTTGAATGCGCTTACCCACGGCGAA 5158034 31 100.0 35 CCACGGCGAA ............................... GCGGATATGTGATTAGACCCTTTTACGACTTTCAG 5158100 31 100.0 35 CGACTTTCAG ............................... ATGTCGAAAACGATGGCCTTGACGTCATCGTCTGC 5158166 31 100.0 34 CATCGTCTGC ............................... TTCGCTGGCATCGGTGGATGGAGCCTTGCGCTTC 5158231 31 100.0 34 CTTGCGCTTC ............................... TCATTGAACCCAAGGACCACTTCGCAGGGCGACT 5158296 31 100.0 34 CAGGGCGACT ............................... TTGACCACATGTTCTCTCTGTGGGAGGAAGGCAC 5158361 31 100.0 34 AGGAAGGCAC ............................... TGTCGAGCGCGCACTGCTGCCGCGATGGCCGGAA 5158426 31 100.0 34 ATGGCCGGAA ............................... GGCTGGGAGCGTTACAAGTTTGAGCAGCCCGTAG 5158491 31 100.0 35 CAGCCCGTAG ............................... TGGTTCAGGGCTGGAAAGACTTGGATGCCCGCATC 5158557 31 100.0 34 TGCCCGCATC ............................... CTGACTATCCCTGCATAGGCCACGACCTGCGAGG 5158622 31 100.0 36 ACCTGCGAGG ............................... AAGAAGACCAGTCTGCGGCGTCGCGGCATCCTGGGG 5158689 31 100.0 34 CATCCTGGGG ............................... CTGAGTTCGTCGCCGTCCCGGTCGTCTGACGCGT 5158754 31 93.5 36 TCTGACGCGT T...........T.................. CATGCCATATGCGGCGAGATCGCACAGCAGAAGGAA 5158821 31 96.8 GCAGAAGGAA .G............................. AATTTAAACT ========== ====== ====== ====== ========== =============================== 19 31 34 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [5,5] Score: 0.37/0.37 # Reference repeat match suggestion: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-6.90,-7.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [177,132] Score: 0/0.18 # # Final direction: F [5.41,0.37 Confidence: HIGH] >NC_020814 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 591414 28 100.0 38 GTGATTTCTG ............................ TAACAAAAGCAGAATCATAGGGCTTCCAGCGAACCCTG 591480 28 100.0 38 GCGAACCCTG ............................ TATAAGTATGAAGCGTATGAATATATTATACCTGATAC 591546 28 100.0 39 TACCTGATAC ............................ TAGTCTCTTCCTCTTGTTGTTTGAAGCTGATTGAAGCCA 591613 28 100.0 38 ATTGAAGCCA ............................ TGAATACAGAGTTTGGGTTGCTAAGGATTTGCTTTCGG 591679 28 100.0 38 TTGCTTTCGG ............................ GTATTGACCTGGATTCTTTTCAAATGTGGTGAGTATGG 591745 28 100.0 38 GTGAGTATGG ............................ GTGCTTTCTTGGATCCAATGTTACTTCAAAATTAAATT 591811 28 100.0 37 AAATTAAATT ............................ GTATAGTAATTCTTCAGAGTTTGAAATTTTCTCTGAC 591876 28 100.0 38 TTTCTCTGAC ............................ GTTCAATTTTTGGTGTAGTTACTGATGCTTTAAACTTT 591942 28 100.0 38 TTTAAACTTT ............................ GTCGCTTTGTGATTTTTGTATTCCTGCGATATCTCCAT 592008 28 100.0 37 ATATCTCCAT ............................ GGATTTTGGATCTGATGTATGGCAATTTATAGATCAG 592073 28 100.0 TATAGATCAG ............................ TTATATATACC ========== ====== ====== ====== ========== ============================ 11 28 37 GTTTCATCTGAACCGTGTGGGATATAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.71%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [666,295] Score: 0.18/0.18 # # Final direction: F [0.55,0.27 Confidence: MEDIUM] >NC_020814 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 928123 29 96.6 36 CGTTTTCTTT -............................ TATTATTACACACCTTCCACAACACATTTAAAGCAA 928188 29 100.0 36 TTTAAAGCAA ............................. AAATTTCTTTCTCTTTGGCTTCAATCTTTCGTAAAG 928253 29 100.0 37 TTTCGTAAAG ............................. TGTCCATCCCACGTTAAAGATTTAGCGTAGTAGATAG 928319 29 100.0 37 TAGTAGATAG ............................. AGTCCAATTTATAAAGTCTTGCACTGCTTGATTGACT 928385 29 100.0 38 TTGATTGACT ............................. ACTTTGTTGAAAGGAACATTAACAATGTAAAAGAAGTA 928452 29 100.0 34 AAAAGAAGTA ............................. TCAGTCCATCATTGTCTGTGACGCTAAAATGTGT 928515 29 100.0 37 TAAAATGTGT ............................. TGTGTTTAGTTTGACAGGGTCTAATATGCCAAGCCAT 928581 29 100.0 35 GCCAAGCCAT ............................. TTGCGAGAAAAGAAAATGAAGAAAATCTTAAAAGG 928645 29 100.0 37 TCTTAAAAGG ............................. CGTTGTAAGCAAGTAGTTCAATCGCAGCGTCCATGAT 928711 29 100.0 37 CGTCCATGAT ............................. AGCTGTGGATTAGGATTTTCAAACTCTTAGAACAAGC 928777 29 100.0 36 TAGAACAAGC ............................. AGAATCATTAGGATTGTTTGCATTTGATATACAAGA 928842 29 100.0 37 ATATACAAGA ............................. ACACTTATACACTCTACACCAAAGCATAAACTCTGGA 928908 29 100.0 36 AAACTCTGGA ............................. CAAGTTTTGAATTTCAAACACCATTCCCTAATTTAA 928973 29 100.0 42 CCTAATTTAA ............................. TATGATTTGTATCAAGAAATAGAGTATTTTTTTATGATATGG 929044 29 100.0 36 TATGATATGG ............................. ATATCATTTTTATAGATTAGAGTCAATATTGTAAAA 929109 29 100.0 38 TATTGTAAAA ............................. GCGATATTAAAAAATGAAGATTTCAAGCCTGATAGAGG 929176 29 100.0 35 CTGATAGAGG ............................. CTTCCAAAGATACAGTTTAAATTTGTAGATGCCAA 929240 29 100.0 TAGATGCCAA ............................. CAGAAATCAC ========== ====== ====== ====== ========== ============================= 18 29 36 CTTCTTAACCCACACGGTTCAGATGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.17%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.10,-3.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [167,587] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_020814 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 930862 29 100.0 36 ACGTTTTCTT ............................. TGATTATGAGTTATTGACAAATGATACGGTACAATG 930927 29 100.0 37 CGGTACAATG ............................. TTTTGGTGTGTTTTATAAAGCCAACAAGAACGATAAA 930993 29 100.0 39 GAACGATAAA ............................. TGTGTAAGAGTGTAGGATAATGATGCCCAATCATATGAT 931061 29 96.6 37 ATCATATGAT ............A................ GAATTGAAAAAGGTACCACACAAGTGGTACCTCATTG 931127 29 100.0 36 TACCTCATTG ............................. AAGAGGATAACTCTTTCCAGCAATCCACACTACCGT 931192 29 100.0 37 ACACTACCGT ............................. TCTTACCTACTATTTGACCTTCATACATAATAAAGCG 931258 29 100.0 TAATAAAGCG ............................. AACAAGCCTT ========== ====== ====== ====== ========== ============================= 7 29 37 CTTCTTAACCCACACGGTTCAGATGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.17%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.10,-3.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [50,520] Score: 0.18/0.18 # # Final direction: F [0.68,0.55 Confidence: LOW] >NC_020815 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================= ====== 27400 17 100.0 37 TATGGCGCCC ................. TCCATCGAGATCGGTGCCGGTGCGCAAACCAAGAACG 27454 17 94.1 37 ACCAAGAACG .......C......... GGCATCCGCATCGGCGACAACGCGCGTACCGGTGGCG 27508 17 100.0 40 ACCGGTGGCG ................. TCGATCACGCTGGGCCAGAAAGTGACGGTGTCCGGCGGGC 27565 17 94.1 TCCGGCGGGC .............T... AGCATCCTCGC ========== ====== ====== ====== ========== ================= 4 17 38 TGGAAACGGTCAACGGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [38.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [220,517] Score: 0.18/0.18 # # Final direction: F [1.05,0.18 Confidence: HIGH] >NC_020819 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1071990 28 100.0 33 NNNNNNNNNN ............................ TCAAGGCAAAATAAAAAACAGGCGCTATGCCTG 1072051 28 100.0 33 NNNNNNNNNN ............................ TCAGCACGATAGATAGCCGTTTGGCCACTATAC 1072112 28 100.0 33 NNNNNNNNNN ............................ CTGGATGGTCGTAGGTTCGACCCCTACAAAGTC 1072173 28 100.0 33 NNNNNNNNNN ............................ TGTCGAAGGCGATGTACGTGAACTGAAAAGTAA 1072234 28 100.0 33 NNNNNNNNNN ............................ CTCCCGGTTGACTGACACCATAAGCGGCCACCC 1072295 28 100.0 33 NNNNNNNNNN ............................ CCATTGAATGCGGAATGACGGCTTTTTTATGAA 1072356 28 100.0 33 NNNNNNNNNN ............................ TAGATGGCCTTTTTCGGCTTAGCTGCCTTAGTG 1072417 28 100.0 33 NNNNNNNNNN .............G.............. TGGCTGAAAACGAGCTTGTAGCATTTGAACCAA 1072478 28 100.0 1 NNNNNNNNNN ............T....A......G..T NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 9 28 33 GTATTCCCCACACATGTGGGGGTGATCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-10.90] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [60.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [209,1784] Score: 0.18/0.18 # # Final direction: F [0.68,0.55 Confidence: LOW] >NC_020834 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 1524174 31 100.0 34 NNNNNNNNNN A.......ATAT.TTG.T...A....A..A. CCAATGGCGAAAACATAGGATTTGTGGGTACACC 1524239 31 100.0 36 NNNNNNNNNN ........A.A..........A......... CCTATTGTCGCCCTTGATTTTCCAATTCAAGACGAG 1524306 31 100.0 36 NNNNNNNNNN ..........A.................... CAAATTCAAGATATACAATTGACCGCAACAGATAAA 1524373 31 100.0 38 NNNNNNNNNN ..........A.................... CTTGGTTATAATTAAAATTGATTGCGGTACACGCCCCT 1524442 31 100.0 36 NNNNNNNNNN ..........A.................... CGGGGATTAACCGAACAGGATTGGATTCGTTATGAG 1524509 31 100.0 36 NNNNNNNNNN ..........A.................... CGCGTAGCTAATGGCAGATTTTTACGGCAATTTAGG 1524576 31 100.0 35 NNNNNNNNNN ..........A.................... CCTCTAGCATTAAAATCCAATCGGTAAACGGTAAA 1524642 31 100.0 36 NNNNNNNNNN ..........A.................... CTTTAATTAATAAAATAGCTTTAGCTTTAGATTTAA 1524709 31 100.0 37 NNNNNNNNNN ..........A.................... CGCGATTAATGGGGATTTAATTGCAACAGGTACAATT 1524777 31 100.0 37 NNNNNNNNNN ............................... CTTAGCTGGGGGATTATCAGCTTATCTTGATATGGCA 1524845 31 100.0 36 NNNNNNNNNN ............................... CGTTCTTTCAGACTGGTTAAACCGGCATTAATAGAC 1524912 31 100.0 35 NNNNNNNNNN ............................... CTTAGGAATACCGATAGCTTCAAAACCCTTGCGTG 1524978 31 100.0 35 NNNNNNNNNN ............................... ATAGTTTCTTGCTCGATGCCGTCATCTTCGCAAAC 1525044 31 100.0 33 NNNNNNNNNN ............................... GACTTCCGTGCCGGTCCAAATCGGAATCGCACG 1525108 31 100.0 35 NNNNNNNNNN ............................... GCTACCGACATCACAAGCCAAATTCGTGAGGCGGT 1525174 31 100.0 33 NNNNNNNNNN ............................... GACTTCCGTGCCGGTCCAAATCGGAATCGCACG 1525238 31 100.0 35 NNNNNNNNNN ............................... GCTACCGACATCACAAGCCAAATTCGTGAGGCGGT 1525304 31 100.0 34 NNNNNNNNNN ............................... AGCAAATTCCACCACCTAAACCGGTGATTGAAGA 1525369 31 100.0 35 NNNNNNNNNN ............................... CATTATCTTTGCTTGGCTTTGGGCGAACCGTCACC 1525435 31 100.0 35 NNNNNNNNNN ............................... TCTTTAATGATTTGAGCTGTTCGCACAGACTGCTG 1525501 31 100.0 34 NNNNNNNNNN ............................... TATGTTGTTATCGTGGGCATTTTATGTACTAGTT 1525566 31 100.0 31 NNNNNNNNNN ............................... TTAATAAAATCTAAAAATACAAAAATAAGAA 1525628 31 100.0 35 NNNNNNNNNN ............................... TCTTTAATGATTTGAGCTGTTCGCACAGACTGCTG 1525694 31 100.0 36 NNNNNNNNNN ............................... ATTTGTGATTTTCATATTTCATCCATTTTGTTAATT 1525761 31 100.0 36 NNNNNNNNNN ............................... ACAGATAATATAGGCTTGCCGTTTGGCTCGGGATGT 1525828 31 100.0 37 NNNNNNNNNN ............................... GGTAAAAGATTACTACTACCCTATGGCAATAAGTGTA 1525896 31 100.0 35 NNNNNNNNNN ............................... GCGCAAGCATTGCACCACGGTAACAACGGCTGCTG 1525962 31 100.0 36 NNNNNNNNNN ............................... GGCGTTTATCAGCATCTGCTCGTGTTACTGTGCCAC 1526029 31 100.0 37 NNNNNNNNNN ............................... GGTGCAAACTACTCCGATAACCGAAGTAGCAGCGGTG 1526097 31 100.0 37 NNNNNNNNNN ............................... GGTTAGTATCTCCAACCAAATGAAACTCGACCTTGCC 1526165 31 100.0 35 NNNNNNNNNN ............................... GAAATACGGACTTTTACGATCAATTGGTAGATTTA 1526231 31 100.0 35 NNNNNNNNNN ............................... GTTTTAAAAAATCAGTAAAGCCTAAGCCTTGTTAG 1526297 31 100.0 35 NNNNNNNNNN ............................... GGTTAGTCTGCCGTGGGCGAATTGCTGAAATTGAC 1526363 31 100.0 1 NNNNNNNNNN ............................... NNNNNNNNNN ========== ====== ====== ====== ========== =============================== 34 31 35 GTTTCAATTCGCAGCCACGCGTAGGTGGCTG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [5,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.10,-3.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [186,193] Score: 0/0.18 # # Final direction: R [0.27,5.65 Confidence: HIGH] >NC_020833 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 1333271 31 100.0 34 NNNNNNNNNN A.......ATAT.TTG.T...A....A..A. CCAATGGCGAAAACATAGGATTTGTGGGTACACC 1333336 31 100.0 36 NNNNNNNNNN ........A.A..........A......... CCTATTGTCGCCCTTGATTTTCCAATTCAAGACGAG 1333403 31 100.0 36 NNNNNNNNNN ..........A.................... CAAATTCAAGATATACAATTGACCGCAACAGATAAA 1333470 31 100.0 38 NNNNNNNNNN ..........A.................... CTTGGTTATAATTAAAATTGATTGCGGTACACGCCCCT 1333539 31 100.0 36 NNNNNNNNNN ..........A.................... CGGGGATTAACCGAACAGGATTGGATTCGTTATGAG 1333606 31 100.0 36 NNNNNNNNNN ..........A.................... CGCGTAGCTAATGGCAGATTTTTACGGCAATTTAGG 1333673 31 100.0 35 NNNNNNNNNN ..........A.................... CCTCTAGCATTAAAATCCAATCGGTAAACGGTAAA 1333739 31 100.0 36 NNNNNNNNNN ..........A.................... CTTTAATTAATAAAATAGCTTTAGCTTTAGATTTAA 1333806 31 100.0 35 NNNNNNNNNN ..........A.................... CCCAACAATGCTTTTCTTTGTATAACCAGCCACGA 1333872 31 100.0 35 NNNNNNNNNN ..........A.................... GTATCATTTATCGCCCGAAAAATCCAAAAATCGCA 1333938 31 100.0 37 NNNNNNNNNN ............................... GGTAAAAGATTACTACTACCCTATGGCAATAAGTGTA 1334006 31 100.0 35 NNNNNNNNNN ............................... GCGCAAGCATTGCACCACGGTAACAACGGCTGCTG 1334072 31 100.0 36 NNNNNNNNNN ............................... GGCGTTTATCAGCATCTGCTCGTGTTACTGTGCCAC 1334139 31 100.0 37 NNNNNNNNNN ............................... GGTGCAAACTACTCCGATAACCGAAGTAGCAGCGGTG 1334207 31 100.0 35 NNNNNNNNNN ............................... GGCACTAGGGCGAGTGCAGACGGGCAAGTGTCGGA 1334273 31 100.0 36 NNNNNNNNNN ............................... GTTGTTTGGATCTCTTAATCTTGATTCTTGAAAAAG 1334340 31 100.0 35 NNNNNNNNNN ............................... GCCTTATCTTAACTGACTCCGGAGGTATTCAAGAA 1334406 31 100.0 37 NNNNNNNNNN ............................... GTTTACCGTAGATCAAAATGCCATTGCTCGTTATAGG 1334474 31 100.0 1 NNNNNNNNNN ............................... NNNNNNNNNN ========== ====== ====== ====== ========== =============================== 19 31 35 GTTTCAATTCGCAGCCACGCGTAGGTGGCTG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [5,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.10,-3.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [186,193] Score: 0/0.18 # # Final direction: R [0.27,5.65 Confidence: HIGH] >NC_020887 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1784467 30 100.0 35 NNNNNNNNNN T.....TAC.ACTC....GA.......... TTAATTAGAATTTTTAAGCTTAATCCCACCAAAGA 1784532 30 100.0 35 NNNNNNNNNN .......C...................... ATGTAACCCGGCTGCCTTAATAGCTTCTTCAGCTT 1784597 30 100.0 34 NNNNNNNNNN .............................. TAAGGCCCGAGACCCACTCCCAAGGCCCATTAAG 1784661 30 100.0 35 NNNNNNNNNN .............................. CCGGCGATGAAGAGGAAAAAATAAAGAATGATAAT 1784726 30 100.0 35 NNNNNNNNNN .............................. CTCGTAGGGAGCTTTTCAGATAAAGGCGGTACAGG 1784791 30 100.0 36 NNNNNNNNNN .............................. GAAATACCGCGCGATACTCTTCCCTAAAATGCAATT 1784857 30 100.0 35 NNNNNNNNNN .............................. CCTATTCCCATGAAGCTGTTTTTTCACTTCTTCCG 1784922 30 100.0 36 NNNNNNNNNN .............................. AGTTTCCCCCCCCTACCCCTTTCAAAATACTAAAAA 1784988 30 100.0 54 NNNNNNNNNN .............................. TTACTCTATTATTCCTTACATAATTAATATTATGTAGTGAATGTATGCTATACC 1785072 30 100.0 35 NNNNNNNNNN .............................. CTGAATTGCCGCATCTGCAATATGAGCTGACTTAA 1785137 30 100.0 36 NNNNNNNNNN .............................. TTTTTTAAGTCTGAAATTAAACTCCTGGGAGATGTA 1785203 30 100.0 37 NNNNNNNNNN .............................. GTGGAACGGTTCTGGCCGATTTTTACAAAGATACTAA 1785270 30 100.0 35 NNNNNNNNNN .............................. TATAGTATTCATCTCCATGCTCATACTTTAAATCA 1785335 30 100.0 36 NNNNNNNNNN .............................. CCAACCTGTTTGGATGTTATAAAATCTATCACCTAC 1785401 30 100.0 35 NNNNNNNNNN .............................. TCGTCAACCCATATCTCCATCCTCGTGCTGTCCAG 1785466 30 100.0 35 NNNNNNNNNN .............................. AGGAATTGAGGTTGAAGAAAAGAAAAAAAGAAGGA 1785531 30 100.0 36 NNNNNNNNNN .............................. TATGCCTTTATACCGTGATCCGGGAAGACAATGAGT 1785597 30 100.0 39 NNNNNNNNNN .............................. AACGCAGGCCCCTTTGATTCATTCTGACCAGTTGAGCTC 1785666 30 100.0 34 NNNNNNNNNN .............................. GCTTTTCCAGCCTTGCTGACACCCTCTATTATAT 1785730 30 100.0 34 NNNNNNNNNN .............................. TTGTAGGGTGCATCTCAGATAAAGGCGGTACAGG 1785794 30 100.0 36 NNNNNNNNNN .............................. GAAGAACGCAAAATGGTGTTTCGTTACGTACCCTAA 1785860 30 100.0 36 NNNNNNNNNN .............................. TATTGCTATTCTATCCCCTAAATTAGCCACAAGAAT 1785926 30 100.0 36 NNNNNNNNNN .............................. GGTATCTTCCCAAACACAGCGTCAATTACCTCGGTA 1785992 30 100.0 35 NNNNNNNNNN .............................. GACTGATGCAGGTAATATCCCTATGGATTTACCAT 1786057 30 100.0 36 NNNNNNNNNN .............................. ATTATAAGGGTATATGGGAAAGATGGGTCAAAGATA 1786123 30 100.0 36 NNNNNNNNNN .............................. TGATCAGGTCTTTTTCTACCCTGAACAAAAATCTTG 1786189 30 100.0 35 NNNNNNNNNN .............................. TATAAGTAAAGAAAACACATAATCATAATTAAAAC 1786254 30 100.0 35 NNNNNNNNNN .............................. GTTCCAGCCGAAATGGGCCTTAACATAGACGGTTA 1786319 30 100.0 37 NNNNNNNNNN .............................. TCTTTTATGCCCTGCTTTTTATTTTTGCTGGAGTACA 1786386 30 100.0 37 NNNNNNNNNN .............................. GGTAAGAACCTACAATGAATACGACGAGGCCAGCGAA 1786453 30 100.0 38 NNNNNNNNNN .............................. GCTGTTTTTGAGGAACGGGTTCTGAATCCTATTCCTGA 1786521 30 100.0 36 NNNNNNNNNN .............................. TGAATCAAACGCCTTTGCATGGGGCGTTGCAGCTGT 1786587 30 100.0 35 NNNNNNNNNN .............................. GACTGGTGCTTTGTTACGTACCCTACACCCCTTCA 1786652 30 100.0 36 NNNNNNNNNN .............................. GCTACTTCGAGGCGCAGGCGGAGGCCGAGCGCCAGG 1786718 30 100.0 34 NNNNNNNNNN .............................. GTAGAAGGTGGCTTTGTTCATCAGCCATTTGGCG 1786782 30 100.0 35 NNNNNNNNNN .............................. TGTGCTTGAGGCTTGCATCGAAAAGTACCAAAACA 1786847 30 100.0 36 NNNNNNNNNN .............................. CTTGTCGGGTTCATATCGGCGTCAGCACTTTATATC 1786913 30 100.0 39 NNNNNNNNNN .............................. GGATGACAGCGGTTTTCAATTTACCCGCATAAAAACAAG 1786982 30 100.0 35 NNNNNNNNNN .............................. CCACTTGCCGTTTCCTCGCCATCGAAAAGAATCGA 1787047 30 100.0 35 NNNNNNNNNN .............................. GCAGCTCTTTCTAACATAAAATGAGTTGCATTGTA 1787112 30 100.0 36 NNNNNNNNNN .............................. GATTTGGTTGCATTCGTAACCATTTCATCAAAAAAA 1787178 30 100.0 37 NNNNNNNNNN .............................. CAAGCGTTCGTATCATGACGAAATATGTTTCTATCAT 1787245 30 100.0 36 NNNNNNNNNN .............................. GGAGCAGGAGGCTCAAGACATCGACTGGCTGAGTGA 1787311 30 100.0 36 NNNNNNNNNN .............................. CATTATGAACGATGCTGACTGGAATACTCACATTGT 1787377 30 100.0 35 NNNNNNNNNN .............................. CCTGCGCTTGTTCGCCCGGTTTACTATCTGCAAAA 1787442 30 100.0 36 NNNNNNNNNN .............................. TACTTTTTCTGCCTTTACCCATCTTACATAATCTAC 1787508 30 100.0 37 NNNNNNNNNN .............................. GCAACCCTGCACTGCAGCTTGTGATAGCTAAAGCTGA 1787575 30 100.0 36 NNNNNNNNNN .............................. GCTTCAACTTTTTCTTGTTTTTTCTTTGCAACTTTT 1787641 30 100.0 35 NNNNNNNNNN .............................. ATGGAAAGCCTTAGCCGTACCGCGTAAGGAGTTTA 1787706 30 100.0 35 NNNNNNNNNN .............................. CACCCAAACACACATCCGAGGTCAAATTTTTGAAA 1787771 30 100.0 36 NNNNNNNNNN .............................. GTGAGCTGATATGCATTACAACCTTGCCGGTTTTAT 1787837 30 100.0 37 NNNNNNNNNN .............................. GAAGGAGGAAGGCATGACATGACCAAACAGGAAGCAT 1787904 30 100.0 35 NNNNNNNNNN .............................. GCCGAGTTTCGCCACGAGTGCCTCATATTCGGCAT 1787969 30 100.0 36 NNNNNNNNNN .............................. AATAGCTCCAAACATAGATGTAATGTTTCATGATAG 1788035 30 100.0 36 NNNNNNNNNN .............................. CAGTGCTGAGCGCTATACATACGACAAACGAGGGCC 1788101 30 100.0 37 NNNNNNNNNN .............................. GTTATCACCTTTTGAGGAACCGGTGGACTATGTAAAA 1788168 30 100.0 35 NNNNNNNNNN .............................. TGTTTCCGGTGTCATGTATGCGCCGTGTTTTCTGA 1788233 30 100.0 30 NNNNNNNNNN .............................. GCACCCGGTGGAACATTCCCGACTGGAAAC 1788293 30 100.0 43 NNNNNNNNNN .........TAC..TCCAA..TGG.T.G.T TCAAAGTCATGGCTGGATGAAGAGGCACAGAAGGTCTGGAAGA 1788366 30 100.0 35 NNNNNNNNNN .............................. TCTAACCCTTATCGGTATTATATGGTCTACTTCTG 1788431 30 100.0 37 NNNNNNNNNN .............................. GTTGTATTACGTTTTCCAAAAACTCTTTTAGAGAAAG 1788498 30 100.0 35 NNNNNNNNNN .............................. TGGTCAAAATACTTTTGTCCTGTCACTTTCGCAAT 1788563 30 100.0 36 NNNNNNNNNN .............................. ATTTTCGCGTGAATGCGTTTCCCAATAATTTTCTGA 1788629 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 64 30 36 ATTTACATTCCAATATGGTTAGATTCAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:73.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [11-14] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [616,191] Score: 0.18/0.18 # # Final direction: R [0.59,0.64 Confidence: LOW] >NC_020887 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1502908 30 100.0 36 TGACTACAAC .............................. AAAACACCCGGTGGTATTGGGCTGTAAGATTTATGT 1502974 30 100.0 35 AGATTTATGT .............................. GGAACCGCCGAAAATGAGGAAGGCAGCAGAGGTAT 1503039 30 100.0 37 GCAGAGGTAT .............................. AATTGCGTCTGTACTTATACCGTCCTTTTCAATACCA 1503106 30 100.0 TTCAATACCA .............................. TTAAGATTAAA ========== ====== ====== ====== ========== ============================== 4 30 36 ATTTACATTCCATTATGGTTAGATTAAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:76.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [63.3-86.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [283,403] Score: 0/0.18 # # Final direction: R [0,0.64 Confidence: HIGH] >NC_020887 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 205660 29 100.0 36 GGTTTTACGG ............................. GCAGAAGAAGTCAGAAAACAGCTTCACGGGAACAGG 205725 29 100.0 39 CGGGAACAGG ............................. GTATAACTGTATAGAAAATCAGGAATACGATTGCCGTTA 205793 29 100.0 37 ATTGCCGTTA ............................. GGGAAGCAGCCTTTATGCGGGTAACGCTGGAGGAAAC 205859 29 100.0 37 TGGAGGAAAC ............................. GGTTTTCATTTATTTTCAAATGATTCCTCGGCAAACC 205925 29 100.0 39 TCGGCAAACC ............................. GTTAATTGAACACTTACATAAACGGTTACCCAAACCAGG 205993 29 100.0 35 CCAAACCAGG ............................. GATAAATGTTGCCTGACGGAAGGGTTTTAGCGGGC 206057 29 100.0 37 TTTAGCGGGC ............................. GAGAAACTCCCCAAATATGAGAAAGTTGCATTGATAA 206123 29 100.0 38 GCATTGATAA ............................. GTAAAAATTCCCTCATAGAACTGACGTATTTCGTTTGA 206190 29 100.0 36 TTTCGTTTGA ............................. GCCGACAGATTGCGGCAGCGTTTGGCGTGAAGATGC 206255 29 100.0 36 GTGAAGATGC ............................. GTGGCACAAAATGTTAATTACAGCAGGGCAATCTCA 206320 29 100.0 36 GGCAATCTCA ............................. GGGCTTAAAAGGTGGTGAATAGGTTTGAATGGCAGG 206385 29 100.0 39 GAATGGCAGG ............................. GGAATTTCGCAACTATCCTTGACGATATACCTGCATTGG 206453 29 100.0 38 CCTGCATTGG ............................. GTTTGAATCGCGGTACAGAACAGTTTCTTTTCTGTCAT 206520 29 100.0 37 TTTCTGTCAT ............................. GATGATAGCATCGTCATAGTACCTTTCTGCTGTTGCG 206586 29 100.0 36 TGCTGTTGCG ............................. GTCTCGAATTCCTTATCCCTCGCCAGAGTTCCGGGA 206651 29 100.0 36 AGTTCCGGGA ............................. CTTGGTTAAATCCCTGATAATTTTACCAACTTTTGA 206716 29 100.0 35 CAACTTTTGA ............................. CGGCATTGCCCGGCAACCTCGGGACTTACTTTTGC 206780 29 100.0 38 TTACTTTTGC ............................. CACAGCCAAACCGGGAAACAACTTGCTCTCGGCAGGAA 206847 29 100.0 37 TCGGCAGGAA ............................. CGGTATCACCCCAGAAAATGAGAACGCTTCCCGGTGT 206913 29 100.0 37 TTCCCGGTGT ............................. CTCATTAGGCTCCATAGTCTCAAGTTCTTTCTGCATG 206979 29 100.0 TTTCTGCATG ............................. CAGTCTTATG ========== ====== ====== ====== ========== ============================= 21 29 36 GTTTGAAGTTTACCTATAAGGAATTGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.41%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.00,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1259,388] Score: 0.18/0.18 # # Final direction: F [5.05,0 Confidence: HIGH] >NC_020887 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2315850 30 96.7 36 AGTAATTTAT .......C...................... GTCAGTTGATAACAGGAATATTTATGAAGTTGTAAT 2315916 30 96.7 37 AAGTTGTAAT .........................C.... AGTTGCGGAATTAAAATACGTGTTTTCACGCGGTGAA 2315983 30 100.0 35 ACGCGGTGAA .............................. TATCAAAAGAAGAAGCCAAAACAGCTGTTGATCTG 2316048 30 100.0 TGTTGATCTG .............................. CTCAGATTGG ========== ====== ====== ====== ========== ============================== 4 30 36 GTTTCAATTCCTTATAGGTAAACTTTAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:73.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [923,79] Score: 0.18/0.18 # # Final direction: R [0.45,5.28 Confidence: HIGH] >NC_020887 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2317560 30 100.0 35 TCTTCTTCAC .............................. CAACCATCATTTGTGCAGCTTTCATTCATTTACTC 2317625 30 100.0 37 TCATTTACTC .............................. GATACGATTATGAAGTGCGTTTAGAATGCAACAACTG 2317692 30 100.0 36 GCAACAACTG .............................. AGAGTGGACGGCGGTCATTATCATGACCGCTTAGAA 2317758 30 100.0 36 CCGCTTAGAA .............................. GCATTTTATGCTCGTAGGGTACATCTCAGATAAAGG 2317824 30 100.0 35 CAGATAAAGG .............................. GACTGATGCAGGTAATATTCCTATGGATTTACCAC 2317889 30 100.0 36 GATTTACCAC .............................. GATGCCGTATGAGGCATACCTAAACGCCCGAGAATC 2317955 30 100.0 36 CCCGAGAATC .............................. GGTATCCAGCGCCACAATCACCTTTGCCTTGTCAAA 2318021 30 100.0 36 CCTTGTCAAA .............................. ACAAAGTCTATTTCTTCGGGAGTTTGAAATCTCCAA 2318087 30 100.0 35 AAATCTCCAA .............................. TAAGTATGGTGACGGTGCAATGAACCTTTGGAGTT 2318152 30 100.0 35 CTTTGGAGTT .............................. GCAGTAGCACTCATATAATCACCTCACAAATAAAA 2318217 30 100.0 36 ACAAATAAAA .............................. TGAATGTATGCTATACCGGGTACGTTTACAAATTTT 2318283 30 100.0 36 TACAAATTTT .............................. CATTAAGCAATATATTGTATAGTATAGCATAAAAAT 2318349 30 100.0 37 GCATAAAAAT .............................. AAAAAGTCGCATCACTTGAAGAAGGCGCAATAAAATA 2318416 30 100.0 36 CAATAAAATA .............................. CTTCGTTTTCAAGCTTGTCCATCTGTGATATAATTT 2318482 30 100.0 GATATAATTT .............................. CCGTAAAACC ========== ====== ====== ====== ========== ============================== 15 30 35 GTTTCAATTCCTTATAGGTAAACTTCAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [254,1586] Score: 0.18/0.18 # # Final direction: R [0,5.05 Confidence: HIGH] >NC_020887 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 784886 30 100.0 34 GGTTTTACGG .............................. TCACCATCGCCTTTACTATACAAGTGTGTTCCTC 784950 30 100.0 36 TGTGTTCCTC .............................. ATTTCGGTGATGCACCCCACGAGCATAAAATGCTCG 785016 30 100.0 35 AAAATGCTCG .............................. GTTAGGTTTCTTTTTAGATTCTATGATACCTTTTA 785081 30 100.0 36 ATACCTTTTA .............................. TCAAAAATCTATATCACTTTTTACTATATCCCTTGT 785147 30 100.0 36 TATCCCTTGT .............................. ATCGATAATGTCAATTCTACCTAAAGGGTAATAATC 785213 30 100.0 36 GGTAATAATC .............................. GTGTTTTTTAATATATTAAGTAATGTTTTATCATTT 785279 30 100.0 36 TTTATCATTT .............................. CGTTAATTAATTTTTCATTCTTCATGGTTTTAACCT 785345 30 100.0 35 GTTTTAACCT .............................. TCCCCAACGCTCAGCAAGTTTAACCTCCGATGTGA 785410 30 100.0 36 TCCGATGTGA .............................. TGAGCGCATCAGCGAACTCATGGAAGAAGAGCGCAG 785476 30 100.0 35 AAGAGCGCAG .............................. GCAGTAGTCCGTATGCTGGTAACATCCGGCCTCTC 785541 30 100.0 35 CCGGCCTCTC .............................. CATAAATAATTATTTAGAGGCGCCTCCTGAAAGGC 785606 30 100.0 36 CCTGAAAGGC .............................. TTACATGTTGCTCATACAGTGGAACAGGTACCGTAA 785672 30 100.0 33 GGTACCGTAA .............................. CTTTAGCGTCAAACATTACATATATCCCTCTAC 785735 30 100.0 35 ATCCCTCTAC .............................. CGAACACCAGGACCACAGCAAAGCGGTGCGTGATG 785800 30 100.0 34 GTGCGTGATG .............................. CCTCGACATTGGATATAGGCCCAAATTCACAAGA 785864 30 100.0 34 ATTCACAAGA .............................. CCTTCTGAAAGGATAATAAAAATAGCCGTCGCAA 785928 30 100.0 35 GCCGTCGCAA .............................. ATGATCGTTGTGGAAAACGAATACTTCGTTTCCAC 785993 30 100.0 TCGTTTCCAC .............................. TTATTAAAAG ========== ====== ====== ====== ========== ============================== 18 30 35 GTTTAAAGTTTACCTATAAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:73.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.00,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [1307,860] Score: 0/0.18 # # Final direction: F [4.87,0 Confidence: HIGH] >NC_020887 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 789252 30 100.0 33 GTTTTTACGG .............................. GATAAAACAAGCTACCCCTGAAGTACTCCATCG 789315 30 100.0 35 TACTCCATCG .............................. CAAATATTCTAAATCCAATCGCAAAAATTGATATT 789380 30 100.0 35 AATTGATATT .............................. CGGGGAAACATTAACGTTATTAAATCAAACACAAA 789445 30 100.0 35 CAAACACAAA .............................. TAGTGAAAGCAGAAAACGCAACTTAGGCAAAACGA 789510 30 100.0 36 GGCAAAACGA .............................. GAAGCCGGCACTAAATATGTTTCCCATGTGTCAAAA 789576 30 100.0 35 TGTGTCAAAA .............................. CGTTTTTTGACGTAGATAGGTTGCTTCGGTCGCCC 789641 30 100.0 TCGGTCGCCC .............................. GTGTTGGTATAACCCCCTCCACACAACCACATCGC ========== ====== ====== ====== ========== ============================== 7 30 34 GTTTGAAGTTTACCTATGAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.00,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [622,1080] Score: 0/0.18 # # Final direction: F [5.14,0 Confidence: HIGH] >NC_020888 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 2343575 32 100.0 34 NNNNNNNNNN ................................ ATAGCGTAAATATCATTACTTATATTGCGCAACT 2343641 32 100.0 34 NNNNNNNNNN ................................ GATTTTTCTCGTCCTCTCCGGTGCTGAATTGCCA 2343707 32 100.0 33 NNNNNNNNNN ................................ CAAATTGCATCAGAATTAACCGTAGCGGGAAAA 2343772 32 100.0 34 NNNNNNNNNN ................................ CTGAATCATTTTAGGCATCCATGTGCCGTACCAT 2343838 32 100.0 35 NNNNNNNNNN ................................ CCCAGATTTTAACGGGCTGCGAAGCAGTCCACTTT 2343905 32 100.0 33 NNNNNNNNNN ................................ ATATCTACTCGCAGTGTAGAGACGTTCAGTTAT 2343970 32 100.0 35 NNNNNNNNNN ................................ CCGCCGTAGCAGACTCTGTACCGGCTAACCAATCT 2344037 32 100.0 33 NNNNNNNNNN ................................ ATCTGGCGTTAGGACTGGATCCCACTCATACAG 2344102 32 100.0 35 NNNNNNNNNN ..................T............. TCGATCAACCCGCGCGGGGTCTTGATGGGTATGAC 2344169 32 100.0 35 NNNNNNNNNN ................................ ACGAGAGTCAGATTTTAAGCGAGGGCGGCCAGCTA 2344236 32 100.0 33 NNNNNNNNNN ................................ ATGATGGGGGCGATGGTTCACAAGCAATGTTCA 2344301 32 100.0 34 NNNNNNNNNN ................................ TTTCAGCGATAAAGCAGCCTGACGGCGTTTTAGG 2344367 32 100.0 33 NNNNNNNNNN ................................ ATAGCTCGGTTTGTGTGAGCGGGTTGGTTTCTT 2344432 32 100.0 33 NNNNNNNNNN ................................ TTGGCGCGATGGCATAGCTCGGTTTGGTTTCTT 2344497 32 100.0 34 NNNNNNNNNN ................................ TGCTGAATATTGTTCGCCATGTTGCTGTTGAGCA 2344563 32 100.0 34 NNNNNNNNNN ................................ CGGGTTGGTTGAGAGCACGCTTAAAACTGAGAAC 2344629 32 100.0 35 NNNNNNNNNN ................................ TAATTTGGCGCGGCGTATTGCGGAAGGGTGTGCGA 2344696 32 100.0 34 NNNNNNNNNN ................................ AGGCCCGCACGACGGCGCTGTTGCGTATAGCTTT 2344762 32 100.0 33 NNNNNNNNNN ................................ GTGCGTTCATGTTGCGGTGACTGATAAGGTCTT 2344827 32 100.0 33 NNNNNNNNNN ................................ GTACGCATTCAAAGCGATGGCGGCAATTTTCTT 2344892 32 100.0 36 NNNNNNNNNN ................................ ACACTATAAAGAGCTGGATAGCGTAAACGTTAACTG 2344960 32 100.0 35 NNNNNNNNNN ................................ CGGCTAATGCCTCGTAGCCATTCCAAAAAACGGAT 2345027 32 100.0 34 NNNNNNNNNN ................................ CTTGAGTGATGCGCCCATCTTGCTGCCGAAAACC 2345093 32 100.0 34 NNNNNNNNNN ................................ CTTGAGTGATGCGCCCATCTTGCTGCCGAAAACC 2345159 32 100.0 33 NNNNNNNNNN ................................ AGACCGCGGCGCTGTCGCCATAGCGCCCGTCTT 2345224 32 100.0 35 NNNNNNNNNN ................................ TAACGGCTAGAGCGCTGCGCACCAGTGGTTTACAA 2345291 32 100.0 34 NNNNNNNNNN ................................ GATAAGCGGTTGGGCAGATGAGGCTGACACTATT 2345357 32 100.0 35 NNNNNNNNNN ................................ CGAAGTGGGTTAGCTCGTATTCAAGCGCTTTTGCA 2345424 32 100.0 34 NNNNNNNNNN ................................ GACCAACTAATAAAAATATGGTCAGTGCCAGGTG 2345490 32 100.0 34 NNNNNNNNNN ................................ TCGCGGCATCAATTACCGCCGCCACGTTACGATG 2345556 32 100.0 34 NNNNNNNNNN ................................ CGACGCTGATGTAAAAGCCGCCCAGGAACAAACT 2345622 32 100.0 34 NNNNNNNNNN ................................ GCGCAAAGAAAAAGACGAGTTAGCCGATGATTTA 2345688 32 100.0 34 NNNNNNNNNN ................................ GGTAAGGCGTATAACGATTTGGCGCAGTTTACTA 2345754 32 100.0 35 NNNNNNNNNN ................................ TAGTGGCCAAGCATTTGCTCGAGCACGGCACTTGT 2345821 32 100.0 33 NNNNNNNNNN ................................ CGTATGGCTTGCCAATTGGGGCGCGTAGGCACG 2345886 32 100.0 32 NNNNNNNNNN ................................ GCAGCAGCATATAGCACTAAGCGACTTACCGA 2345950 32 100.0 34 NNNNNNNNNN ................................ TCTGTCGATCCATCTGCAACAGTTATGACAACCT 2346016 32 100.0 34 NNNNNNNNNN ................................ CGAAGCCGATCGCACCGCGCTAACCGCAGTTTTA 2346082 32 100.0 35 NNNNNNNNNN ................................ GTCGCGCACTTTTTTCTGTTCTGGCTCTCGTGTCA 2346149 32 100.0 36 NNNNNNNNNN ................................ CTGCGACGAACTCTCGACAGCCATGGAAGGCACCGA 2346217 32 100.0 34 NNNNNNNNNN ................................ TCAATATCCCCAAGATTCATTGCTAAATCCATAA 2346283 32 100.0 35 NNNNNNNNNN ................................ CTCCGGTTGTCACAGCAAAATGCCCTTGCTGTAAT 2346350 32 100.0 35 NNNNNNNNNN ................................ CTGGCGATTGATCAAGCCGCTTTAATCCTGATACG 2346417 32 100.0 33 NNNNNNNNNN ................................ CTATCTCGTTCCGCTTCCAGCGAGACATTTCTA 2346482 32 100.0 34 NNNNNNNNNN ................................ GATTCGCGCCGCATTTGCCGGTCGAGATATGCCT 2346548 32 100.0 35 NNNNNNNNNN ................................ CTGATTGCCACCGGATAATGTGCGTTGGCATTCCT 2346615 32 100.0 34 NNNNNNNNNN ................................ TTTACGATAACCATTTCTCTTAGCTTGTCATTAT 2346681 32 100.0 33 NNNNNNNNNN ................................ GCTCGCCGTCGATTATCACTTTATCACCGGCAT 2346746 32 100.0 34 NNNNNNNNNN ................................ CTGGAGACCATTTTTCGTACTGCCCCTGGTCAAT 2346812 32 100.0 33 NNNNNNNNNN ................................ GTTATTGCGAAATTACGGAGTAACTGATTATGA 2346877 32 100.0 35 NNNNNNNNNN ................................ TTGTTGTGGCCCTCGATAAAATCAATCATTACGGT 2346944 32 100.0 34 NNNNNNNNNN ................................ ATTCGCTCTGCTACGCAACGCACTGCAAGGCAAA 2347010 32 100.0 36 NNNNNNNNNN ................................ CATATGGAATCAAATATCCGAGATAAGGGTATTGAT 2347078 32 100.0 34 NNNNNNNNNN ................................ CGAGTTGTTGTAAGCCACTTTTGTTTTTGAGTAT 2347144 32 100.0 35 NNNNNNNNNN ................................ TCTGCAATGCGGTTCTGGAACTGACGGATGCACAG 2347211 32 100.0 34 NNNNNNNNNN ................................ CAGCATTCTTAAAGCAGCTAAGAAAGGCTGATAA 2347277 32 100.0 35 NNNNNNNNNN ................................ TTTACAACGCTGTTACGAAAGGCATGGAGTTTGCG 2347344 32 100.0 34 NNNNNNNNNN ................................ CTTGAGGCTCAGCAGTTGAAAATTGAACTAAAAA 2347410 32 100.0 34 NNNNNNNNNN ................................ CAATAATCAGTAAAACCAATACGGAAACTGTTAT 2347476 32 100.0 33 NNNNNNNNNN ................................ ATGTCACGATCAGTAAACAAAGTCACACTTATC 2347541 32 100.0 33 NNNNNNNNNN ................................ TCTCGACTCATGATTCCCAGTCACTCACTTTTT 2347606 32 100.0 35 NNNNNNNNNN ................................ GTCGTAACGCTGCGGCGACGCCACCAGTGCAGCGA 2347673 32 100.0 36 NNNNNNNNNN ................................ AACCATCATGTTGTAACGCTCGCCTTTTTGAGGCTC 2347741 32 100.0 33 NNNNNNNNNN ................................ AATATCAACGCGAGTGCCGAGCGTTAACTCAGA 2347806 32 100.0 34 NNNNNNNNNN ................................ GCGTCGGCTGGTATCGCTGCCGGTGTCGCGGTGG 2347872 32 100.0 34 NNNNNNNNNN ................................ ACCAGCGCGGCGAGATATTCAAAGCGATAACTCA 2347938 32 100.0 33 NNNNNNNNNN ................................ GCGTTAATGCAGCTGCCGCGATTGCTTCTTCTT 2348003 32 100.0 36 NNNNNNNNNN ................................ CGCCTACAAACCGCAGGCTGTGAAGTAACGCGCTTA 2348071 32 100.0 35 NNNNNNNNNN ................................ ACGTCAACTAGCTGCCTTTTCCAGTTCCGAAACAA 2348138 32 100.0 34 NNNNNNNNNN ................................ CATTGAGACGATGATCACGAAGGCGATTGTCTAC 2348204 32 100.0 34 NNNNNNNNNN ................................ ACATATAGCCGGTGATACTCCCGTGCCCACCTTG 2348270 32 100.0 34 NNNNNNNNNN ................................ GTATTCCCAGTGCTGACCAAACGTCACACCGATT 2348336 32 100.0 35 NNNNNNNNNN ................................ TTGCCAAATTGGATGCACATAGCTCGTACTATGCT 2348403 32 100.0 34 NNNNNNNNNN ................................ CCCCACGCAGCAGCAGTTGTTATTGTCGGTGATT 2348469 32 100.0 35 NNNNNNNNNN ................................ CAACTTCATCACTTTCAATACCTTCATCGCCTTCA 2348536 32 100.0 33 NNNNNNNNNN ................................ ATATCTCATTCAATCGCCATGCAATATCCGGAT 2348601 32 100.0 34 NNNNNNNNNN ................................ GCACTTAACATCAGTGAGCAAAGTAACAGCTAGA 2348667 32 100.0 34 NNNNNNNNNN ................................ GAAAGCACAGGGGGTGTGCCGTCAGATGACACCA 2348733 32 100.0 35 NNNNNNNNNN ................................ TTCAGCACCAGACAATACGCGACACACGGAAAAAT 2348800 32 100.0 33 NNNNNNNNNN ................................ AGACCTTTTAACTCTGCCAATATTCGATTATTT 2348865 32 100.0 33 NNNNNNNNNN ................................ GACTGTAAAATTTGGCAGTGTAGTTCTTACTGA 2348930 32 100.0 34 NNNNNNNNNN ................................ TTCTTCTGGTTGAGAAGTTGGAGCCGCTAATACT 2348996 32 100.0 33 NNNNNNNNNN ................................ GGGGGTTCAGTTTGTATTCGCTAGCAATTGCGA 2349061 32 100.0 34 NNNNNNNNNN ................................ TCGGCAAGCATGTGAGTGTTCAAGCATTCAAAGA 2349127 32 100.0 35 NNNNNNNNNN ................................ ATTCTGAACTGTAAAATGTACCGCGAACCCTAATA 2349194 32 100.0 34 NNNNNNNNNN ................................ ACAAAAACACGACACGTGACGAGCTTCTTTATAT 2349260 32 100.0 36 NNNNNNNNNN ................................ AGTAGCCATTAGATGCAAAGCATTCTTTGAAGCCGT 2349328 32 100.0 33 NNNNNNNNNN ................................ CTAATATCTGTATTAGCGCACATTGCTAAGATT 2349393 32 100.0 34 NNNNNNNNNN ................................ CCGCCCTTGCTGACAGGCTTGATGTGATCAATGT 2349459 32 100.0 34 NNNNNNNNNN ................................ AATGAGTAAGAGGGTTGTTAAAGAATTAAACCAA 2349525 32 100.0 34 NNNNNNNNNN ................................ CAGATGGCGAGTTTAAGTCTCAAGTGTCTAATCT 2349591 32 100.0 33 NNNNNNNNNN ................................ GTATAAATGCCTTTTTGGTGGTCGTGGCGGCAT 2349656 32 100.0 33 NNNNNNNNNN ................................ AATATTGAATGTTATCAATGCTATTGTGGCCAT 2349721 32 100.0 34 NNNNNNNNNN ................................ AGTTATATTCCCGTATAGGGATGAAGTCTACAAT 2349787 32 100.0 34 NNNNNNNNNN ................................ CCAGATAGGTCAACACGCTTGCCAGCAACTGATT 2349853 32 100.0 34 NNNNNNNNNN ................................ CCATTCGCCACACTTAAAAGCAAAGCCGGGTTTT 2349919 32 100.0 34 NNNNNNNNNN ................................ ATAGCCTGCGCAGTTGAAGAAAGAGACTTCTCTT 2349985 32 100.0 33 NNNNNNNNNN ................................ AAAAATCACCGGCGACGCCGTTGAGCATTACCG 2350050 32 100.0 33 NNNNNNNNNN ................................ GAGGTAGCTATATTATTGAGACCGACGCAATCT 2350115 32 100.0 35 NNNNNNNNNN ................................ CTCAAACGCTGCTAGACCTAATTCGGTCCAAGCCT 2350182 32 100.0 34 NNNNNNNNNN ................................ TTAAGGAGTGCCCCAGCAGCATAACTACTGGGGC 2350248 32 100.0 34 NNNNNNNNNN ................................ GGAATGGTTTACCAGTAACCTGACTAGCTAATAA 2350314 32 100.0 33 NNNNNNNNNN ................................ GAGGCGATTCGCGGATTCAGCTTTAATCAGTAT 2350379 32 100.0 34 NNNNNNNNNN ................................ TCTTTCGCTCATAGGTGTTTCTCAACGCTCACAT 2350445 32 100.0 34 NNNNNNNNNN ................................ GTTGTTTAATGACAACCATCCCCGACTGGATAAA 2350511 32 100.0 35 NNNNNNNNNN ................................ TTTGCATACCGCCGAACACAAACTTCCCTTTCGAT 2350578 32 100.0 35 NNNNNNNNNN ................................ CAACAGCCGGGTGGCGCATCTGTATCATTTTACCA 2350645 32 100.0 36 NNNNNNNNNN ................................ CTTTGGTATCGGGTAAAGGCGCTTAACAATTTCAGG 2350713 32 100.0 35 NNNNNNNNNN ................................ TTTCAGGGGTTCCTGCGCTTGCTACTTCTGTCGCT 2350780 32 100.0 38 NNNNNNNNNN ................................ TTGGCACTGAGTTTAATTTGACGCCTGAGAGATTTTGC 2350850 32 100.0 33 NNNNNNNNNN ................................ GGTCTTGCCGATGACCTAACCGGCAAAACAGCA 2350915 32 100.0 34 NNNNNNNNNN ................................ TTATATGCAAAATGCATTCTATCTTGATGTACCA 2350981 32 100.0 34 NNNNNNNNNN ................................ GAAGTTGTTGCTGTTGAAGTTAATGAGAGACTTG 2351047 32 100.0 35 NNNNNNNNNN ................................ GAGCACCCATACCAAACAACTCGGCGGCGATGCGT 2351114 32 100.0 34 NNNNNNNNNN ................................ AGCCCGAATATCAAGCCTAGTCTGCGTCATAGCC 2351180 32 100.0 36 NNNNNNNNNN ................................ TCCTGAAGGTGAGTTCAAGTCTCAAGTATCCAATTT 2351248 32 100.0 1 NNNNNNNNNN ................................ NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 117 32 34 GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [5,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-4.10,-4.10] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [33,190] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_020894 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 40626 29 100.0 32 CGATGACCTC ............................. AGTGCCTCGAAGACGAGGGTGGAGGCTGCGGC 40687 29 100.0 32 AGGCTGCGGC ............................. CGGGTTGCGGGGGCGTGGATGGTCGTGGTCAT 40748 29 100.0 32 TCGTGGTCAT ............................. CTTCTTGGCGGCCTTGTTGATGCGCTTCTTGT 40809 29 100.0 CGCTTCTTGT ............................. ACTCGATGGC ========== ====== ====== ====== ========== ============================= 4 29 32 GGGACCATCCCCGCACGCGCGGGGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,1] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [25.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [87,423] Score: 0.18/0.18 # # Final direction: R [0.37,0.45 Confidence: LOW] >NC_020892 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 675993 36 100.0 30 NNNNNNNNNN .................................... TACCCTTGACAAGACCTCGATGCAGGCATC 676059 36 100.0 30 NNNNNNNNNN .................................... ATTGTCTGCCGGTGATTACTCAGGATTCCA 676125 36 100.0 31 NNNNNNNNNN .................................... TTCCTCTTGAGCTCGAAGAGACGCTTGGAGA 676192 36 100.0 30 NNNNNNNNNN .................................... ACTCAGTATGGGCCATGCATCGACGAGTAT 676258 36 100.0 30 NNNNNNNNNN .................................... AATCATCGCCGGGGTACAGCCTGTCGCACC 676324 36 100.0 30 NNNNNNNNNN .................................... GCTATTGAGAGGGTATATTACCCAAGCCAT 676390 36 100.0 1 NNNNNNNNNN .....................AT...C....TC... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 7 36 30 GTTTGAGAGTGTTGTCAAATACGAGGTAACTCAATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:61.11%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [29,110] Score: 0.18/0.18 # # Final direction: F [0.78,0.45 Confidence: LOW] >NC_020894 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 50724 29 100.0 32 NNNNNNNNNN ............................. CGCCTGGTTAGCGTCGACGTTACTTTCGAGGT 50785 29 100.0 32 NNNNNNNNNN ............................. CGGTGCTAGAGCCGCCCCCACTACCCACTACC 50846 29 100.0 32 NNNNNNNNNN ............................. TGTTGCAGGCGACGGCGCAGGAGATCGTGGCT 50907 29 100.0 32 NNNNNNNNNN ............................. GTCACACAGGTGATCAGGACCGTCTTCCTCGC 50968 29 100.0 32 NNNNNNNNNN ............................. AGCATCGATCGCAAGCCGTGCTCGAAGCGCCG 51029 29 100.0 32 NNNNNNNNNN ............................. CCCACGAAGCCCCCGTCCGAGTCTGGGCGGGG 51090 29 100.0 32 NNNNNNNNNN ............................. CAGCTCGGCGCGCAGGAACGGTCCGGGCTGCG 51151 29 100.0 32 NNNNNNNNNN ............................. CAGTCCAGGCCGTCCTTGATGTGACCGACCGT 51212 29 100.0 32 NNNNNNNNNN ............................. GAGGTGAGGCTCGTCGGCCAGGGCGCCGGCAA 51273 29 100.0 32 NNNNNNNNNN ...........AGG..G............ CAGCGTCCCGGACCGTGCAAGATGCCCCAGTC 51334 29 100.0 32 NNNNNNNNNN .......T..AAGG............... ACACCCCACCCCATCCACAGCAGTCAGGAAGA 51395 29 100.0 32 NNNNNNNNNN ..........AAGG............... GAGTCCGGGCTGTGGGCGTTGAAGGGCTACAA 51456 29 100.0 32 NNNNNNNNNN .............GT.............. GTCGACGTCGCGTTCGTGCCGCGCTCCGCGTT 51517 29 100.0 32 NNNNNNNNNN ..A.....T....GT.........CC..A CCTTGACCTTGTCGACCTTCATCTCGAACAGG 51578 29 100.0 1 NNNNNNNNNN TGCTC...GC..TT...........C..T NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 15 29 32 GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-33] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [428,1685] Score: 0.18/0.18 # # Final direction: F [0.68,0.55 Confidence: LOW] >NC_020894 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 55197 29 100.0 32 GTCAGTGAGT ............................. CCGCTCAGCTCGCACCGCCGGGCGGCGCGGAC 55258 29 100.0 32 CGGCGCGGAC ............................. CCATCAGTACTCCCGACAGAGCCCACCGGTTC 55319 29 100.0 32 CCACCGGTTC ............................. GCGGGTGCCAATGTCCTTGCTCATCAGGGGTT 55380 29 100.0 32 ATCAGGGGTT ............................. GACATGCGCTCGCCCCTGGAACGGCAAGGGCG 55441 29 100.0 32 GGCAAGGGCG ............................. CAGGTGCGTGCACGGCGCGTGCAGTGGGCCGG 55502 29 100.0 AGTGGGCCGG ............................. AAGGTGACGAG ========== ====== ====== ====== ========== ============================= 6 29 32 GTGCTCCCCGTAGGCGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-10.50,-9.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [46.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [86,288] Score: 0.18/0.18 # # Final direction: F [0.64,0.55 Confidence: LOW] >NC_020894 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 55970 29 100.0 32 NNNNNNNNNN ............................. CTCGACGGGTTCGCCGAGAAGGTGCTACACCC 56031 29 100.0 32 NNNNNNNNNN ............................. CCCATGGCTTGGTTCAAGGACGTGGACCTGGA 56092 29 100.0 32 NNNNNNNNNN ............................. CCCACTCTGGCACTGTTTCAGGCCATTGCGTA 56153 29 100.0 32 NNNNNNNNNN ............................. GACTTCCCGCGAAAGTGTTGCGAACCTAGGGT 56214 29 100.0 32 NNNNNNNNNN ............................. TCCGGTCGTGCACGACTGCGCCGACTGCGGAC 56275 29 100.0 31 NNNNNNNNNN ....................ATG.TC..G GCCACAATCGCGACCTGTTCGAGAACAAGGC 56335 29 100.0 32 NNNNNNNNNN ............................. GCTCCTAGGTGGGGTGCCCGCCGGGGACGTGG 56396 29 100.0 32 NNNNNNNNNN ............................. CACGCTGGGACCTCACCCTCGGCGCGGCCTCC 56457 29 100.0 32 NNNNNNNNNN ............................. GCCACGGCCTCCCGGCCGGAGAGCTTGTGCCG 56518 29 100.0 32 NNNNNNNNNN ............................. GCGTCGTAGAGGCGGCGATCGTTGCTGCCCTG 56579 29 100.0 32 NNNNNNNNNN ............................. CTGCCTGAGGGGGTCCCCTATCCGAAAGAAAC 56640 29 100.0 32 NNNNNNNNNN ............................. GGCAGACCAGGGCGATGCGGGAACTGTCCCGG 56701 29 100.0 32 NNNNNNNNNN ............................. GAGGTCGCCAGTCGAACGGCACCGACTTCACC 56762 29 100.0 1 NNNNNNNNNN ..............T...........T.. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 14 29 31 GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [46.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [20,105] Score: 0.18/0.18 # # Final direction: F [0.68,0.55 Confidence: LOW] >NC_020894 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 57882 29 100.0 32 NNNNNNNNNN ............................. ACCGCGACCTTCCGGTGGAGGGCGTGCAGTTC 57943 29 100.0 32 NNNNNNNNNN ............................. GGCCGCATCACCGGCCCCGGCTTCGAACTGCG 58004 29 100.0 32 NNNNNNNNNN ............................. TGACCGCAGGCCGCCGCCACGTCGCGCGCCTT 58065 29 100.0 31 NNNNNNNNNN ............................. GACGCGCTCGTGAAGGTGGCCAAGCAGTACC 58125 29 100.0 32 NNNNNNNNNN ............................. TACGAGAACGGCCGCTCCGAGCCGAAGTCGCC 58186 29 100.0 32 NNNNNNNNNN ..................G.......... GACCCTGGTACCGGATCACCGACCGGTACCAG 58247 29 100.0 32 NNNNNNNNNN ..................G.......... GCGACTCGGGCCGCCATCGAACGTGCCGAGGC 58308 29 100.0 32 NNNNNNNNNN A.................G.......... GAAGGCGCGATGGCCGGACGCCGGGCGATCGA 58369 29 100.0 32 NNNNNNNNNN ..............G...G.A........ CCGCCGACGATCAGGCCGAACGTGCCGGTCAG 58430 29 100.0 32 NNNNNNNNNN ..................G.........T GCGGGTGGGTCGCCGCCGACCGGCGCACCGCC 58491 29 100.0 32 NNNNNNNNNN ......T...........G..GA...... GACTCTGGGACCACGATGGTGGTCAACGTCCT 58552 29 100.0 32 NNNNNNNNNN .......T...GCC............... CATTTCGATCCAGAGCACGCCGGCCGCCGCCA 58613 29 100.0 32 NNNNNNNNNN ...........GCC..T.G.........T GCCCTGCACCACCACCATTTCGTCGGCCGGCG 58674 29 100.0 32 NNNNNNNNNN ...........GC.T...G.......... ATCACCCCCGTGCCGAACACGCCGACGTCGGT 58735 29 100.0 1 NNNNNNNNNN ...........GC.T...G.......GG. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 15 29 31 GTGCTCCCCGCAGGCGCGAGGATGGTCCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-5.70,-9.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-26] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [46.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [855,259] Score: 0.18/0.18 # # Final direction: F [0.86,0.74 Confidence: LOW] >NC_020894 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 57047 29 100.0 32 GTCAGTGAGT ............................. GACGTGCTCACTTGGCGATCTCCTTACGGGCG 57108 29 100.0 32 CTTACGGGCG ............................. GACGAGGTAGTCACCCTGGTCCGGATCCGTCG 57169 29 100.0 32 GGATCCGTCG ............................. ATCGAGAATCATTTCGTCGTCGACCCCGCGAA 57230 29 100.0 33 ACCCCGCGAA ............................. CCCACGAAGCCCCCGTCCGAGTCTGGGCGGGGG 57292 29 100.0 32 TGGGCGGGGG ............................. AGGTTCCCGTACTGGCGGAGCGGCAGGCCGAA 57353 29 100.0 32 GCAGGCCGAA ............................. GTCTGGCCCAACTGGTGCCAGGATCATCCCCA 57414 29 100.0 32 ATCATCCCCA ............................. CAAGGTGTCAGCACGAGACACAGGGGAGGCCA 57475 29 96.6 32 GGGGAGGCCA ...............A............. GGCGGCCAGTGCGTTGAGGTCGCCACCAACCT 57536 29 100.0 CCACCAACCT ............................. CGGGCCCGGT ========== ====== ====== ====== ========== ============================= 9 29 32 GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [48.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [20,1458] Score: 0.18/0.18 # # Final direction: F [0.68,0.55 Confidence: LOW] >NC_020913 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 867719 36 100.0 26 NNNNNNNNNN .................................... CCACGTTAGGAAGGCTCTGCCTATCG 867781 36 100.0 27 NNNNNNNNNN .........G.......................... TGCGGAGTCCGTTGCCTTTGTTATTGA 867844 36 100.0 26 NNNNNNNNNN .................................... AAACGGTAGCCCAGGAAGGCTGGCCA 867906 36 100.0 28 NNNNNNNNNN .................................... GACGGAAGTGATAGGGTAACCGCACCTC 867970 36 100.0 26 NNNNNNNNNN .................................... GATGCATCCGCAATGTGTGCCTGCTC 868032 36 100.0 27 NNNNNNNNNN .................................... GTACCTTGACCGCAAAAAGTGAACCGA 868095 36 100.0 25 NNNNNNNNNN .................................... TAACATGACAGGAAATCCACCCGAT 868156 36 100.0 26 NNNNNNNNNN .................................... CCTCGGCGGCAGATGTGGAGACAGAA 868218 36 100.0 27 NNNNNNNNNN .................................... ACATCAAGCCCCTCCAGTCATCCGTCC 868281 36 100.0 25 NNNNNNNNNN .................................... ATTAAAAGGGGCAGTGCCGAACCGA 868342 36 100.0 27 NNNNNNNNNN .................................... CCACTTCACAGCCAAAAGCGTATCTTT 868405 36 100.0 28 NNNNNNNNNN ...............G.................... CAACCAAATATGGCCCGTTGTTGTTTGC 868469 36 100.0 28 NNNNNNNNNN .................................... CAACCAAATATGGCCCGTTGTTGTTTGC 868533 36 100.0 27 NNNNNNNNNN .................................... ACTTATGACGACATTTTTAGGGCATAC 868596 36 100.0 27 NNNNNNNNNN .................................... CCCTGCCGCCTGAATATCTTTGCACCT 868659 36 100.0 26 NNNNNNNNNN .................................... GCCGGAGGCGTGGCGGGATGGTTCCT 868721 36 100.0 25 NNNNNNNNNN .................................... GTTTCGCCCTCTCTCGGTTCATCAA 868782 36 100.0 26 NNNNNNNNNN .................................... TCGCCTTGTCTCGAGGCGGTCCTTGT 868844 36 100.0 26 NNNNNNNNNN .................................... CTTCAGATCTTCAGGATCATCCTCAA 868906 36 100.0 27 NNNNNNNNNN .................................... GGTGACGCAGCTGACCGCCGAACGCGA 868969 36 100.0 26 NNNNNNNNNN .................................... TCTCTCCTTCATCTGGCCTGTCCGTT 869031 36 100.0 27 NNNNNNNNNN .................................... GAACGCCCGGAGGTCGAAGGCCGCAAG 869094 36 100.0 28 NNNNNNNNNN .................................... TGTGCGGCTCGTCGCTTTCCCCGTGGTA 869158 36 100.0 26 NNNNNNNNNN .................................... TACCCCTTCCTCCGTACGTAGTCTTT 869220 36 100.0 26 NNNNNNNNNN .................................... CACAGCCGACTTCATCAGGAAGAGAC 869282 36 100.0 27 NNNNNNNNNN .................................... CCACGAAAGCCTTACGCTCCGCTTTGA 869345 36 100.0 26 NNNNNNNNNN .................................... ATGCGCTCCGCGATCAACTCCATCGA 869407 36 100.0 26 NNNNNNNNNN .................................... CAGGCGGACATGGAAAGCGCGATAGC 869469 36 100.0 27 NNNNNNNNNN .................................... ACGCTGAAGATAGACGACGTGAGCTTT 869532 36 100.0 29 NNNNNNNNNN .................................... TAACCTTCCGTAAGTAACACGTTTATATC 869597 36 100.0 27 NNNNNNNNNN .................................... CGATCATCGCAGACGAGGTAGATTCAT 869660 36 100.0 26 NNNNNNNNNN .................................A.. AGTGTCTGTTCACGTGTGGTATTCTT 869722 36 100.0 26 NNNNNNNNNN .................................... CCGGTCTGCGTCCTTGGCGAAGCTCT 869784 36 100.0 27 NNNNNNNNNN .................................... AAGAAGGCCGTGGTGGTCACCGCCACT 869847 36 100.0 25 NNNNNNNNNN .................................... GCACCACGTGGGCGACCCTCATCAG 869908 36 100.0 25 NNNNNNNNNN .................................... AGACGTTGAATCTCTGGCGGTTGCT 869969 36 100.0 27 NNNNNNNNNN .................................... CAGGTCGAACTTGAGAACGGAAGACTT 870032 36 100.0 26 NNNNNNNNNN .................................... CTGCAGCGCACTGTTCCCAATTTTAA 870094 36 100.0 26 NNNNNNNNNN .................................... CGCCCGAAGAAGCCCAGGAATTCTAC 870156 36 100.0 27 NNNNNNNNNN .................................... GTTCACGGCACCGTGGGGAATATCGTT 870219 36 100.0 26 NNNNNNNNNN .................................... TCCGGTCTTGGAGTAGTGAGCCACTT 870281 36 100.0 28 NNNNNNNNNN .................................... GGGAGTTCGACCAGTTCATAACCTGGAA 870345 36 100.0 26 NNNNNNNNNN .................................... GGAGCAGTATTAGACTTAATCGTCTG 870407 36 100.0 26 NNNNNNNNNN .................................... GGCGCGGCCCGCAGCTTCCTGACCGA 870469 36 100.0 39 NNNNNNNNNN ...................................T GAGTTTTAGACGGGAGTTCGACCAGTTCATAACCTGGAA 870544 36 100.0 26 NNNNNNNNNN .................................... GGAGCAGTATTAGACTTAATCGTCTG 870606 36 100.0 26 NNNNNNNNNN .................................... GGCGCGGCCCGCAGCTTCCTGACCGA 870668 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 48 36 26 ATCTACACTAGTAGAAATTCTGAATGAGTTTTAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:69.44%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.90,-0.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [56.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [235,26] Score: 0.18/0.18 # # Final direction: F [0.82,0 Confidence: HIGH] >NC_020912 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================== ====== 1704224 20 100.0 37 NNNNNNNNNN ..T..C..T..T.....A.. GATAGCGGCCAAGCCTTGGAGGAACTGTCGACCTTTC 1704281 20 100.0 34 NNNNNNNNNN .................... CAACGCGGCGAGGTCCTGCAGGTTGCGGCCTCCC 1704335 20 100.0 37 NNNNNNNNNN ...........T........ GACCGCGGCCAGGTCCTGGAGGAGCTGTCGGCCCTTC 1704392 20 100.0 34 NNNNNNNNNN ........T........... CAGCGCGGCGAGGTCCTGCAGGTTGCGGCCTCCC 1704446 20 100.0 37 NNNNNNNNNN .................... GACAGCGGCCAGGTCCTGGAGGAACTGCCGGCCCTTC 1704503 20 100.0 34 NNNNNNNNNN .................... CAGCGCGGCGAGGTCCTGCAGGTTGCGGCCTCCT 1704557 20 100.0 34 NNNNNNNNNN ........T........... CAGTGCGACGAGGTCCTGCAGGTTGCGACTTCCC 1704611 20 100.0 37 NNNNNNNNNN ........T........... GACAGCGGCCAGGTCCTGGAGGAACTGCCGGCCCTTC 1704668 20 100.0 25 NNNNNNNNNN ........T........... TAGCGCGGCCAGGTTGCGGCCTTTC 1704713 20 100.0 34 NNNNNNNNNN .................... CAACGCGGCGAGATCCTGCAGGTTGCGGCCTCCT 1704767 20 100.0 34 NNNNNNNNNN .................... CAGCGCGACGAGGTCCTGCAGGTTGCGGCTTCCC 1704821 20 100.0 34 NNNNNNNNNN .................... CAGCGCGGCGAGGTCCTGCAGGTTGCGGCCTCCT 1704875 20 100.0 34 NNNNNNNNNN ........T........... CAGTGCGACGAGGTCCTGCAGGTTGCGACTTCCC 1704929 20 100.0 37 NNNNNNNNNN ........T........... GACAGCGGCCAGGTCCTGGAGGAACTGCCGGCCCTTC 1704986 20 100.0 25 NNNNNNNNNN ........T........... TAGCGCGGCCAGGTTGCGGCCTTTC 1705031 20 100.0 34 NNNNNNNNNN .................... CAACGCGGCGAGGTCCTGCAGGTTGCGGCCTCCT 1705085 20 100.0 34 NNNNNNNNNN .................... CAGCGCGACGAGGTCCTGCAGGTTGCGGCTTCCC 1705139 20 100.0 37 NNNNNNNNNN .................... GACAGCGGCCAGGTCCTGGAGGAACTGCCGGCCCTTC 1705196 20 100.0 34 NNNNNNNNNN .................... CAGCGCGGCCAGGTTCGGCAGGTTGCGGCCTCCC 1705250 20 100.0 37 NNNNNNNNNN .................... GACGGCGGCCAGGTCCTGAAGGAGCTGCCGGCCTTTC 1705307 20 100.0 37 NNNNNNNNNN .....C..T..T.....A.. TAGAGACGCAAGGTTCTTCAGTGCCTGCGCTCCTCCT 1705364 20 100.0 1 NNNNNNNNNN ..T................. NNNNNNNNNN ========== ====== ====== ====== ========== ==================== 22 20 34 TGCTGTTGCTGCTGGTCGAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [7-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [43.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [41,216] Score: 0.18/0.18 # # Final direction: R [0,1.23 Confidence: HIGH] >NC_020990 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2718782 29 100.0 32 GTCAGCGAGA ............................. AGTTGGCACCGCCGCACGATGATCACAACCCA 2718843 29 100.0 32 TCACAACCCA ............................. GCCGAGGGGTTGTGGATGAGGCCGCCGCGCTG 2718904 29 100.0 32 CGCCGCGCTG ............................. TTCGGGCTCGCCACCTCGACCGCGAGCACAGT 2718965 29 100.0 32 CGAGCACAGT ............................. TCGTCGAGGGTGGCGTTCAGGACCGTGACGAT 2719026 29 96.6 CCGTGACGAT ..........................T.. CTCCCGGC ========== ====== ====== ====== ========== ============================= 5 29 32 CTGCTCCCCGCGCGTGCGGGGTTGGTCCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-12.40,-13.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [45.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [283,32] Score: 0.18/0.18 # # Final direction: F [0.86,0.74 Confidence: LOW] >NC_020990 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 2056965 23 100.0 39 NNNNNNNNNN AG.....A............... ATCAGTGACCGGCACCGCACAACGAAGCCCGCCCAAAAC 2057027 23 100.0 39 NNNNNNNNNN ....................... ATCAGTGACCGGCACCGCACAACGAACCCCGGCCAAAAC 2057089 23 100.0 39 NNNNNNNNNN ....................... ATCAGTGACCGGCACCGCACAACGAACCCCGGCCAAAAC 2057151 23 100.0 39 NNNNNNNNNN ....................... ATCAGTGACGGGCACCGCACAACGAAGCCCGGCCAAAAA 2057213 23 100.0 41 NNNNNNNNNN ....................... ACCCCACCGGGACCGGGGAACGGCCCGCACCCCGAAAAGAA 2057277 23 100.0 1 NNNNNNNNNN ....................... NNNNNNNNNN ========== ====== ====== ====== ========== ======================= 6 23 39 CAGCCCGGCCGGCGCTTGAGGCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [2,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.20,-1.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [26.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [14,22] Score: 0/0.18 # # Final direction: R [0.27,0.78 Confidence: MEDIUM] >NC_020990 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 3218016 23 100.0 19 NNNNNNNNNN .AC...CG.....GT.G.G.... AAACCGCCCTCACGACGGT 3218058 23 100.0 19 NNNNNNNNNN .AC...C......GT.C.G.... AAGCCACCCTCACGACGGT 3218100 23 100.0 31 NNNNNNNNNN .AC...C....AAG......... TCACCACCGCGGTCGTCGCGACGGAAACCGC 3218154 23 100.0 19 NNNNNNNNNN ....................... TCGTCCCGACGGAAGCCAC 3218196 23 100.0 43 NNNNNNNNNN ....................... AAGCCACCACGGTCACCACCGCGGTCGTCGCGACGGAAACCGC 3218262 23 100.0 19 NNNNNNNNNN ....................... TCGTCCCGACGGAAGCCAC 3218304 23 100.0 43 NNNNNNNNNN ....................... AAGCCACCACGGTCACCACCGCGGTCGTCGCGACGGAAACCGC 3218370 23 100.0 19 NNNNNNNNNN ....................... TCGTCCCGACGGAAACCGC 3218412 23 100.0 1 NNNNNNNNNN ....................... NNNNNNNNNN ========== ====== ====== ====== ========== ======================= 9 23 26 CCTCACGACGGTCACCACCACGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [30.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [697,1923] Score: 0.18/0.18 # # Final direction: F [0.64,0.59 Confidence: LOW] >NC_021009 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 14161 36 100.0 30 NNNNNNNNNN .................................... TCATGTCTTTAAATCTTAGACATCCTCTTT 14227 36 100.0 30 NNNNNNNNNN .................................... GGTTTTATCTCCAGGCCCAACTCCTCTCTG 14293 36 100.0 30 NNNNNNNNNN .................................... AACAATATCCTCTTTCATCTATCTCCTGCT 14359 36 100.0 30 NNNNNNNNNN .................................... ATTTCCTACAGCATAAGGGTCAAAAAATCC 14425 36 100.0 30 NNNNNNNNNN .................................... TTAATCTACATACTTTATATCCAAACATGC 14491 36 100.0 30 NNNNNNNNNN .................................... TTTATACGGGCCTTCAAATTTCTGACATCC 14557 36 100.0 30 NNNNNNNNNN .................................... AACAGCAGAAACAATAACGTCTATATCATT 14623 36 100.0 30 NNNNNNNNNN .................................... CGCGTCCCATCCTTCCACTTCGCCGGTCGT 14689 36 100.0 30 NNNNNNNNNN .................................... TGGGCGGACGCCGAAAGAAGACTATCGGCA 14755 36 100.0 30 NNNNNNNNNN .................................... TCTTAACACGCATACCAGAACACCACTTCC 14821 36 100.0 30 NNNNNNNNNN .................................... ATTGGAGGAGTTGTCGGAATATGACCCATT 14887 36 100.0 30 NNNNNNNNNN .................................... TGCTGTACAAGGCTTCAATGATTCCATGAC 14953 36 100.0 30 NNNNNNNNNN .................................... CCGGAATATCTCCGGCTCTGGCATACATTA 15019 36 100.0 30 NNNNNNNNNN .................................... TGCTGTGTTTTTTGCTGCATTGTTTCCGGT 15085 36 100.0 30 NNNNNNNNNN .................................... ATTCTATCGCCTATCAGTTTTACGGCGACA 15151 36 100.0 28 NNNNNNNNNN ....................CA...A...TGT..TT TATTTTTGATTCATCCTCCCATGCGAGG 15215 36 100.0 1 NNNNNNNNNN .................TGG.A.TAAAACAGGTTAT NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 17 36 29 GTTTGAGAATGATGTAAAAATGTATGGTACTCAAGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-25] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [63,61] Score: 0/0.18 # # Final direction: F [0.41,0 Confidence: MEDIUM] >NC_021009 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 711854 29 93.1 38 AAATACTGTT ......T............G......... TCAAAAAGTCCTGTTTTTTTCTCTCCATCTGGAATTTT 711921 29 93.1 36 CTGGAATTTT ....G..............G......... CTACCGCCAAGGGCCATGGATTTTAACGGCTCTCCC 711986 29 96.6 41 CGGCTCTCCC ....G........................ ATTTTGCCACTGGGCATTCGTTCTACTTTCATACAATATTT 712056 29 100.0 34 TACAATATTT ............................. CTCTTCCTGTGATCATTTGACACAACCTCCTAAA 712119 29 100.0 ACCTCCTAAA ............................. GTAATCATATAGTTTCATATCTTCTTCACAACGTTTGATCTCTTG ========== ====== ====== ====== ========== ============================= 5 29 37 GTTGAACCGTACCTATGAGAGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:58.62%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1365,226] Score: 0.18/0.18 # # Final direction: F [4.68,0.41 Confidence: HIGH] >NC_021010 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 2748232 32 100.0 36 NNNNNNNNNN ................................ GGTTTGAAGCATTTGTAAAGTAGATCCCTGTTTGCC 2748300 32 100.0 34 NNNNNNNNNN ................................ TGTTCTCCTGTCTTGGGGTCTATCTGCGGTATCT 2748366 32 100.0 33 NNNNNNNNNN ................................ ATAGTATACACGATTTTCTAATTTTTATCAAGA 2748431 32 100.0 34 NNNNNNNNNN ................................ CTTGTTAGCAGGGCACTACGAAATGGCTACTATG 2748497 32 100.0 33 NNNNNNNNNN ................................ TAAGTTCTGCGATTGTTAATTTTCTCATGGTTT 2748562 32 100.0 34 NNNNNNNNNN ................................ ATTAAATGGAAAGATATATTACAGGGAAAACTCA 2748628 32 100.0 33 NNNNNNNNNN ................................ CCAAAAACAAGCCCTCGATGGTTGCAGAGAATG 2748693 32 100.0 33 NNNNNNNNNN ................................ CAACGTATCATCAAACATCATCAAGCCATTAGA 2748758 32 100.0 34 NNNNNNNNNN ................................ TCTGCAGGAGTTTCGTTCGGCTCGTCGAAATACT 2748824 32 100.0 33 NNNNNNNNNN ................................ TAAGTCTGAAATATACAAGGTCTTATATGTCTC 2748889 32 100.0 34 NNNNNNNNNN ................................ TCAAATATTCTTCATCATACAGCCATTCATCAGT 2748955 32 100.0 33 NNNNNNNNNN ................................ ATAGCCACCATGCCGGTCTCGTCTGATGTCATA 2749020 32 100.0 33 NNNNNNNNNN .......................T........ TCTTTAGCTGTTCCCACTGTTCCGGCGTTATGT 2749085 32 100.0 33 NNNNNNNNNN .......................T........ CAGTGTCACCTCAAAGGTGTAGTCCCCGGTGAA 2749150 32 100.0 36 NNNNNNNNNN ................................ ATGGCATAAAAGCCGTCACAAAGTCCGTTGGAAATG 2749218 32 100.0 34 NNNNNNNNNN ................................ TGAAGAACCTGAATACGAACGATTGTGTAATATG 2749284 32 100.0 33 NNNNNNNNNN ..................A............. TCTGCAAGGTTAGTGGCTGTGCCTGTACCTGCC 2749349 32 100.0 1 NNNNNNNNNN ....T..............T...A........ NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 18 32 33 GTCGCTCCTCTCGTGGGAGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [5,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.70,-3.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [479,1940] Score: 0.18/0.18 # # Final direction: F [5.55,0.55 Confidence: HIGH] >NC_021011 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1862505 36 100.0 30 NNNNNNNNNN ...CCC.AC.GT.T..CCGCCCTT.A.A........ GAACATACAGATGAAGCTGATTTAATGACG 1862571 36 100.0 30 NNNNNNNNNN .................................... CGGAGCGTGCGCTTGCTAAGCTGTTTTTAA 1862637 36 100.0 30 NNNNNNNNNN .................................... GCTATTCTTCAGAAAGTATCGGAAACGCAC 1862703 36 100.0 30 NNNNNNNNNN .................................... AAAGAAAGAAATGAGAACCGTACAGACAGT 1862769 36 100.0 30 NNNNNNNNNN .................................... CGGCGATGCACCATATTACGGATGTAGCGA 1862835 36 100.0 30 NNNNNNNNNN .................................... ATTCGCTCAGAGTTTCGTGAGCCGGTCTTC 1862901 36 100.0 30 NNNNNNNNNN .................................... AGCAGTACACCGAAGCCCACGGCATACGCA 1862967 36 100.0 31 NNNNNNNNNN .................................... ACGCCTGGCGGATGGAACAGACACAGCCCGA 1863034 36 100.0 30 NNNNNNNNNN .................................... CGCTGTCCCGTATCTTCTGTGTATACTTTA 1863100 36 100.0 30 NNNNNNNNNN .................................... TTTTTCAATTTCTTCGTCTGTCCATATTAT 1863166 36 100.0 30 NNNNNNNNNN .................................... GTATCATGATCTTTCTGATTCTGACAAACG 1863232 36 100.0 30 NNNNNNNNNN .................................... AAGGACCCACCTGTCACAGTACAATTTGTA 1863298 36 100.0 30 NNNNNNNNNN .................................... CCGCTTACAAAGCTTATATGCGGTATATAC 1863364 36 100.0 30 NNNNNNNNNN .................................... TTATCGACATCCTTTAAGTGGGTATGATCC 1863430 36 100.0 30 NNNNNNNNNN .................................... GAGAATGGCGTAAAAGTAAAAAATCCTAAG 1863496 36 100.0 30 NNNNNNNNNN .................................... TGAGGAGGTTGAGTCTGTTTTAAATGCAAG 1863562 36 100.0 30 NNNNNNNNNN .................................... GCATAACCTACGGCGGAGAAACTGTGAAAA 1863628 36 100.0 30 NNNNNNNNNN .................................... CGTTAGCCTTGTTGGGCTTCGGCTTTTGCA 1863694 36 100.0 30 NNNNNNNNNN ........G........................... ATATCCCGGTGATATGCTGCTGTCGGAAAT 1863760 36 100.0 30 NNNNNNNNNN .................................... TGTGGGCGCAGATATATCTCCTTGATGAAG 1863826 36 100.0 31 NNNNNNNNNN .............................T...... TATGCAAGAGAAATGGCATAAAAAAAGCTAA 1863893 36 100.0 30 NNNNNNNNNN .................................... TGGTATAGTGCCACCACCAATATTATATCA 1863959 36 100.0 30 NNNNNNNNNN .................................... CTCACTGACAACGCCCTCAATCTGATATGT 1864025 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 24 36 30 GTTTTACTACCCTATAAATTTACACTACTCTCAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:69.44%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [18-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [60.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [68,1514] Score: 0.18/0.18 # # Final direction: R [0.27,0.59 Confidence: MEDIUM] >NC_021012 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1710614 37 100.0 29 GGTTGCAGCG ..................................... GATGAAAAAGAAATACATATACCATAGTA 1710680 37 100.0 29 TACCATAGTA ..................................... TGGCAAAGCAACACCATCTGCAAACTTAA 1710746 37 100.0 GCAAACTTAA ..................................... ATCACGGTATCAAGATCACATCCTAGCG ========== ====== ====== ====== ========== ===================================== 3 37 29 ATTATACCATACCAAGTGATAACAGGGAATTACAACA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.57%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.70,-1.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [542,629] Score: 0/0.18 # # Final direction: F [0.37,0.27 Confidence: LOW] >NC_021013 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================== ====== 1120346 21 100.0 21 NNNNNNNNNN .A................... AGCCTACAACAGTAGAGCCTA 1120388 21 100.0 21 NNNNNNNNNN .A................... AGCCTACAACAGTAGAGCCTG 1120430 21 100.0 21 NNNNNNNNNN ..................... AGCCTACAACAGTAGAGCCTG 1120472 21 100.0 30 NNNNNNNNNN ..................... AGCCTACAGACGCTCCTTCAACAGAGCCTA 1120523 21 100.0 27 NNNNNNNNNN ..................... TAGCTCCTACTACACCTGATGCTACAT 1120571 21 100.0 1 NNNNNNNNNN ..G.T...C..G....A...A NNNNNNNNNN ========== ====== ====== ====== ========== ===================== 6 21 24 CTACAACAGAGCCTGCTACAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [7,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.30,-1.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [3333,433] Score: 0.18/0.18 # # Final direction: F [1.23,0.37 Confidence: MEDIUM] >NC_021012 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2602847 36 100.0 35 AAGGGACAGT .................................... GATGATACTAATACACTGTAACCATCCTTACCATT 2602918 36 100.0 35 CCTTACCATT .................................... CTGTGGTGCAGGTGTTACCAATAACGCAGATAACC 2602989 36 100.0 35 GCAGATAACC .................................... AGGTTTGTAGACGCAGATCCGGAGCAGGAGCGCAG 2603060 36 100.0 37 AGGAGCGCAG .................................... ATCCATCGTGTTTGCCATATAAACAATATTGGTTTGA 2603133 36 97.2 35 ATTGGTTTGA ...........T........................ TTGATCCGGGCAGTTCCGCTGTCAGATTTTCGTGT 2603204 36 100.0 37 ATTTTCGTGT .................................... ATTATTCATGACTTCTTTCATTGCTTCCTTTTTCGCT 2603277 36 97.2 35 CTTTTTCGCT .........................A.......... AGCATAAGCCCGGTATCTTTGGCAGTTTCAATAAG 2603348 36 100.0 36 TTTCAATAAG .................................... AGGCTTTACGATTTGTTTTTTGAAATTTTATTTATG 2603420 36 100.0 35 TTTATTTATG .................................... GATTTTCCATTGCATCAAAAAGATTTTCTATTCTA 2603491 36 100.0 39 TTCTATTCTA .................................... AATCTCTGTAACGTGTTTTCATGGATTTATATAATGTAC 2603566 36 97.2 34 TATAATGTAC ..................A................. CATAGTCTTTAGACTTTAAGGCTTCCTTAAGGTC 2603636 36 91.7 CCTTAAGGTC .....A...TA......................... CTTTAGCTGT ========== ====== ====== ====== ========== ==================================== 12 36 35 ATTGAGATAAGAGAACCCCGTGGAGGGGACGAGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [13,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-8.00,-6.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [45.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1453,88] Score: 0.18/0.18 # # Final direction: F [1.33,0.27 Confidence: HIGH] >NC_021014 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1596740 32 100.0 34 AAAATTTGCC ................................ AGTGCTGTCCAGCCAAACTTACCAAGTCGTGCAA 1596806 32 100.0 33 AGTCGTGCAA ................................ GCCCAGGAGCCGGATGTCCTGGCGAAGTCTCCG 1596871 32 100.0 33 GAAGTCTCCG ................................ TACCTTCTTCAGTGGAGCAAATCCACCGCCTTC 1596936 32 100.0 33 CACCGCCTTC ................................ AACCTCATGCGTCTTGTGTTAGCTAAACACTGC 1597001 32 100.0 33 TAAACACTGC ................................ AAATCTACGCCAGTCTCGATGGAAGTGCAGGCC 1597066 32 100.0 33 AGTGCAGGCC ................................ TGCATGCTGCCACTGCCTGGCTTCCGCCTGTTC 1597131 32 100.0 34 CCGCCTGTTC ................................ CTATTTTTGGTACGTAGAATTTGATATCTATGGC 1597197 32 100.0 33 TATCTATGGC ................................ AAGATACAAGGCGGCTGCCTCCTCGTAAAAATC 1597262 32 100.0 33 CGTAAAAATC ................................ CTCAACAATGGTATAGGTTCCTACTGGAATATA 1597327 32 100.0 33 CTGGAATATA ................................ GGATATGCTTTACCGCAACCAGCCAGCATAGAT 1597392 32 100.0 34 CAGCATAGAT ................................ CGGCAAGGGGAAAGGAAGATCAAATAAGGACCTC 1597458 32 100.0 34 TAAGGACCTC ................................ CTGCTGATTGGGATAACTTAGAGGTTTCTCCATG 1597524 32 100.0 34 TTTCTCCATG ................................ GGCAATGCTCTGGTGAATGTCATCGTGATCCCGG 1597590 32 100.0 35 GTGATCCCGG ................................ GCTCATATCGCGGGACGTTGCCTCGTAGCTGAGTC 1597657 32 100.0 35 TAGCTGAGTC ................................ TTTTCCTGTCTTTCGATCCCGTATGCCTGTAATCT 1597724 32 100.0 33 CCTGTAATCT ................................ CTTAGAAGAAATCATATCGCTGGTGTCCGATTC 1597789 32 100.0 34 TGTCCGATTC ................................ TCGATCAGGAGCGGTTGAAGGATCCCCAGAAGCT 1597855 32 100.0 CCCAGAAGCT ................................ ATAAGAACTG ========== ====== ====== ====== ========== ================================ 18 32 33 GTCGTTCCCCACGAGGGAACGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [8,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.70,-8.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [81.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [459,294] Score: 0/0.18 # # Final direction: F [5.14,0.37 Confidence: HIGH] >NC_021014 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1598179 32 53.1 34 NNNNNNNNNN NNNNNNNNNNNNNNN................. AATTAAATTGAATTATAAAAGAAGGGAGCGTATA 1598245 32 100.0 33 GGAGCGTATA ................................ CGCTTACTCCACGAGTTACAGTATACTGCCACC 1598310 32 100.0 34 TACTGCCACC ................................ TATCACAGGTCAGCAGAAAAGTTGTGGTACATGT 1598376 32 87.5 37 TGGTACATGT ...................A.........--- GATCATAGTAAATGGTATTTGTAATAGGGCTAACACC 1598445 32 96.9 34 GGCTAACACC ...................A............ TCTGTCTTTGCGGTGATCTCGTGCGGATCCGGAA 1598511 32 100.0 33 GGATCCGGAA ................................ GGAAAAGAAGCAATGTCTGGGATGCTTGCTATC 1598576 32 100.0 GCTTGCTATC ................................ CTGGATATGA ========== ====== ====== ====== ========== ================================ 7 32 34 GTCGTTCCCCACGAGGGAACGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [8,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.70,-8.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [15-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [0.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [292,542] Score: 0/0.18 # # Final direction: F [4.87,1.05 Confidence: MEDIUM] >NC_021014 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 2274617 30 100.0 36 NNNNNNNNNN T..G...C....T................. AATCTTCCGGATTTTTTCTCCTTCTTTTTTTAGCAG 2274683 30 100.0 37 NNNNNNNNNN .............................. TCTGCTCTTCGGTCAGTTTTCTCGGGGCTCGTAAATT 2274750 30 100.0 37 NNNNNNNNNN .............................. CAAGACCGTAACGCTTATAAATGCGATTTGCATACGC 2274817 30 100.0 35 NNNNNNNNNN .............................. TGAGTCTGATTCCAGTTTTGTGTAACCAGATGCCA 2274882 30 100.0 37 NNNNNNNNNN .............................. GTACCAGGTTTCCGAATTCTGCTGTTGACTGATACAC 2274949 30 100.0 36 NNNNNNNNNN .............................. CGCTGCGTCGTAAATCATTAAAGAATCCGCATCCTC 2275015 30 100.0 35 NNNNNNNNNN .............................. GAAACTAAACTATCTCAAACCACCACTGATCTGCA 2275080 30 100.0 37 NNNNNNNNNN .............................. GTATTCCGTAGCCGGACCGGAAGGCGCATACAAATAT 2275147 30 100.0 35 NNNNNNNNNN .............................. TCCCGGCTAAAAGCATCGAAAGGGGAGGATACCAG 2275212 30 100.0 36 NNNNNNNNNN .............................. CGGGTCTGCCGGTACAGATACGATGCTGATTTCGTA 2275278 30 100.0 35 NNNNNNNNNN .............................. GTATCCTGTGCAGAATACCGATTAATCTCATCAAG 2275343 30 100.0 35 NNNNNNNNNN .............................. CAGGCAATGCTGGGCGTAGAAGCTGACGGACAGTT 2275408 30 100.0 35 NNNNNNNNNN .............................. AAAGCTAAGATCAAAGATTTTTGTATAGCAAATAA 2275473 30 100.0 35 NNNNNNNNNN .............................. GACTGCTCGCGTGGATTAAACCGCCGGACACAGGA 2275538 30 100.0 34 NNNNNNNNNN .............................. CAGCAGTATACTCGATCGGCGCAGCTTCTTCTTT 2275602 30 100.0 35 NNNNNNNNNN .............................. AGTGATGCGTCCATACAGATGTATACGTCTCTCTT 2275667 30 100.0 35 NNNNNNNNNN .............................. CGAAGACGGATCCATGAAGTCACTGAGAGAAACTA 2275732 30 100.0 36 NNNNNNNNNN .............................. GATGTTCTCAACAGGAGTTGCAATAACCTGTCCTCT 2275798 30 100.0 33 NNNNNNNNNN .............................. GATAGACGCTTTATGATTATTCATTATACTTTT 2275861 30 100.0 36 NNNNNNNNNN .............................. AGACAGAACTCAAAGAAATTGATAAGTTGCTGAAAC 2275927 30 100.0 34 NNNNNNNNNN .............................. TCATTTCGCCATGGTCCTGGGAGGGCGGATGTCT 2275991 30 100.0 34 NNNNNNNNNN .............................. GCAATGCTGCCATTCGCGGCGGCCGCACTTGCAA 2276055 30 100.0 35 NNNNNNNNNN .............................. TAAAGATTCAAGCGGATTAGTTTCGCAGGATACAA 2276120 30 100.0 35 NNNNNNNNNN .............................. TCAGGGAACTCTGTATAGTTGCCGTCGCTGTCAAC 2276185 30 100.0 36 NNNNNNNNNN .............................. GGCTTCTTCACCAGCCATCAACTCTGCCATATCCGA 2276251 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 26 30 35 CTTTACATTCCACAATGTTTCTATTAATAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:73.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [145,180] Score: 0/0.18 # # Final direction: R [0,0.78 Confidence: HIGH] >NC_021018 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2575230 36 75.0 28 NNNNNNNNNN NNNNNNNNN........................... CTGATTTATTAGTTACAGCGGAATGTGT 2575294 36 100.0 26 CGGAATGTGT .................................... AAAATACCCTAAAATATACGAAAGGT 2575356 36 100.0 26 TACGAAAGGT .................................... GTCTGTATGTGTTTTTTCGCCAGCCT 2575418 36 100.0 27 TCGCCAGCCT .................................... AGACGTACCACACATTAACCCAGCAAT 2575481 36 100.0 27 ACCCAGCAAT .................................... GATGAAACAGGCCATTGACAAGATCAT 2575544 36 100.0 26 ACAAGATCAT .................................... AATCAGATAATCCTGACCGCCGTTTG 2575606 36 100.0 27 CCGCCGTTTG .................................... TCTTGGAGACTCAATCAATGACCAGTT 2575669 36 100.0 27 ATGACCAGTT .................................... TGTTACACTATACTGTGCCATGATTAT 2575732 36 100.0 27 CCATGATTAT .................................... TGATTATACGCAAGACTCGGAATATTA 2575795 36 100.0 26 CGGAATATTA .................................... TTCGGCATGGACATTTGGGAAATAGA 2575857 36 100.0 26 GGGAAATAGA .................................... CACCAGACACCGGCGGCAAGCTCTTG 2575919 36 100.0 27 CAAGCTCTTG .................................... TTTTAATGCCATATTCCAAGGGCTGTC 2575982 36 100.0 26 AAGGGCTGTC .................................... AAATTCAGCCTCGCCTACGCACGCCT 2576044 36 100.0 ACGCACGCCT .................................... TCAAAATTGG ========== ====== ====== ====== ========== ==================================== 14 36 26 ATCTACAACAGTAGAAATTATTTAAGGTTACTCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:72.22%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [0.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2324,463] Score: 0.18/0.18 # # Final direction: R [0.18,0.68 Confidence: MEDIUM] >NC_021020 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================== ====== 1590794 21 100.0 40 NNNNNNNNNN ..................... GTGATCCTTGCGGTTCGTTTTGTACGATTAGCGTTCGCGC 1590855 21 100.0 40 NNNNNNNNNN ..................... GTGATCCCATGTGATAGTGTGGTCTTGCTGTCTGCTCTCC 1590916 21 100.0 41 NNNNNNNNNN ..................... TTGATCCTATGCATATGGCTGACTGCAAGCGTCAGGTGGCC 1590978 21 100.0 39 NNNNNNNNNN ....C................ GTGATCCCACAACACAGGGGTAGAATGCCATGGTGTCGC 1591038 21 100.0 1 NNNNNNNNNN GC................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================== 5 21 40 CTTTTCCCCGCATACGCGGGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [50.0-46.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [37,2996] Score: 0.18/0.18 # # Final direction: R [0.41,0.55 Confidence: LOW] >NC_021021 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 2226325 32 100.0 36 ACGTGTTTTT ................................ CATGGAAAGCGTTTGGGGGCCCTGCACGATCTTCTG 2226393 32 100.0 35 CGATCTTCTG ................................ CAGCAGCTACCGCAGATGGTAAGTGATTGCATCAT 2226460 32 100.0 34 ATTGCATCAT ................................ GGGGCAGCGCCACGCGGCGCCCCTCCCGCCGGCC 2226526 32 96.9 34 CCCGCCGGCC .......T........................ GCGCATGATCGCTTCGTCATCAAGTGCGCCTTCG 2226592 32 96.9 TGCGCCTTCG .......T........................ TGGTAGTTTA ========== ====== ====== ====== ========== ================================ 5 32 34 GTTTCAACCCACGCGCCCCTATGGGGCGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [5,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.40,-9.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [441,1928] Score: 0.18/0.18 # # Final direction: R [0,0.82 Confidence: HIGH] >NC_021021 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 671049 36 100.0 30 NNNNNNNNNN .................................... CTGGCATCGCGTTCGTAGCACTCGCATAGG 671115 36 100.0 30 NNNNNNNNNN .................................... TTCCACGGTGGACTAACGGCTTTCTCATAG 671181 36 100.0 30 NNNNNNNNNN .................................... TAACCTTAGCGCTGATAGAGAAAATCTTGA 671247 36 100.0 30 NNNNNNNNNN .................................... TTGAAATGGACACGGATAAACTGATTCAGG 671313 36 100.0 30 NNNNNNNNNN .................................... GGAGGAAGGAACGGAATGAAAAGCAAGTTG 671379 36 100.0 30 NNNNNNNNNN .................................... CGGTACACCGCGCCCGTGGACGTGTTTAGG 671445 36 100.0 29 NNNNNNNNNN .................................... AAGGTTGACGATAACAAGCTGTTACGCCG 671510 36 100.0 30 NNNNNNNNNN .................................... TATAGAGATTGATAATCTAGATACAAAATC 671576 36 100.0 30 NNNNNNNNNN .................................... CGGTAGCGTGATATGGCTTCGCGTCGTGTA 671642 36 100.0 30 NNNNNNNNNN .................................... ACACGTACAGGACGTGCAGCACGAAGTCAA 671708 36 100.0 30 NNNNNNNNNN .................................... CGTGCGCCACGCGCGCAACGAGGTGGCCGA 671774 36 100.0 30 NNNNNNNNNN .................................... GGGTTGCGGCAAGGCTTGTATCCATGAGGT 671840 36 100.0 30 NNNNNNNNNN .................................... TGGACGGTAGTAGTTTTATCGGTATGCGTA 671906 36 100.0 29 NNNNNNNNNN .................................... TGTTGGCGGCGCTCAAGGGACGGTCGTTT 671971 36 100.0 29 NNNNNNNNNN .................................... CCCGCGGGCCGCTCCCATGTGACGCGTCA 672036 36 100.0 30 NNNNNNNNNN .G......A............A......G....... CACCGCCCCTGCTAGGCTCTCGCAAGTCGC 672102 36 100.0 30 NNNNNNNNNN ............................G....... AAGCGGCTGATGCGCTCGTCGTATGTGCTG 672168 36 100.0 1 NNNNNNNNNN .....A.T..G.....G...C.....T..T...GG. NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 18 36 29 GTTTTGGAGCAGTGACAAACTGACTGGTAGTCAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:55.56%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.20,-2.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [41.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [57,258] Score: 0.18/0.18 # # Final direction: F [1.05,0.18 Confidence: HIGH] >NC_021023 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1359094 37 97.3 29 AAAAAAGTTT -.................................... TATAACGTAAATCACAGTCTTTTGTAAGT 1359160 37 97.3 29 TTTTGTAAGT ................C.................... TGGTCGCAGTTTCCGCTCGAACTGCTTTT 1359226 37 97.3 29 AACTGCTTTT ................C.................... ATTAACGTAGTTGATTCAGAAAAACCAAG 1359292 37 100.0 29 AAAAACCAAG ..................................... GTCTTTAAAGTAACCAGTAACATAATAAC 1359358 37 100.0 ACATAATAAC ..................................... CTCGGAGAA ========== ====== ====== ====== ========== ===================================== 5 37 29 CGTTTTGGTACCATTCTAAACAACATGACTCTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [474,158] Score: 0.18/0.18 # # Final direction: F [0.45,0.41 Confidence: LOW] >NC_021030 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 1180985 36 100.0 29 NNNNNNNNNN .................................... TGAGTGGCCGAGCTTATGGCGAACTCGCT 1181050 36 100.0 29 NNNNNNNNNN .................................... ATCCCAGTAAGCAAGAAGAGTGTCGGCGT 1181115 36 100.0 30 NNNNNNNNNN .................................... ACAAGGCGAACGTATCAAGAGATCGCTGCT 1181181 36 100.0 29 NNNNNNNNNN .................................... GATATAGGAAAGCATGTATATCATTTATC 1181246 36 100.0 30 NNNNNNNNNN .................................... TCAGGCGACTCTTTTTGTGCCCTTGGGTAA 1181312 36 100.0 29 NNNNNNNNNN .................................... AACTCGTCCGGGATATTATACCGCGCCTT 1181377 36 100.0 30 NNNNNNNNNN .................................... CGATGATGCAACAGGTAACTGCGACGATTG 1181443 36 100.0 30 NNNNNNNNNN .................................... GGAATGCCGTGGATACAGGTCCATCGCCTT 1181509 36 100.0 30 NNNNNNNNNN .................................... GCGCCCCCTTACGTAATTGAACGGCTTGAA 1181575 36 100.0 30 NNNNNNNNNN .................................... GATGATCTACACGGAGAAGAGCAAAGGCGT 1181641 36 100.0 30 NNNNNNNNNN .................................... AGGATACTGCGTAAAATACGTAAGTAAGGT 1181707 36 100.0 30 NNNNNNNNNN .................................... TCGGCCGTCCTTAACGGCAGCGCGAGGATA 1181773 36 100.0 1 NNNNNNNNNN .........................NNNNNNNNNNN NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 13 36 29 GTTGTGGTTTGATGTAGAATTTCGATAAGATACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [60.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [474,749] Score: 0/0.18 # # Final direction: F [0.68,0 Confidence: HIGH] >NC_021031 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 304674 36 100.0 29 NNNNNNNNNN T.....T............................. TGCAAAAAGATTCAGAAGGAGTTATTTCA 304739 36 100.0 30 NNNNNNNNNN .................................... GAAAACTACAAGTTAGAAGAAATCGAAGCT 304805 36 100.0 30 NNNNNNNNNN .................................... ATTCATCAAGGCTCATAGTTTCATACTGCA 304871 36 100.0 30 NNNNNNNNNN .................................... AACTACCTTTTATTTGTAAATCACACTCAC 304937 36 100.0 30 NNNNNNNNNN .................................... GCCTTCCCAGTGCTTGCGGTTAATAGCCCC 305003 36 100.0 30 NNNNNNNNNN .................................... TTTTTGTTCGGTATCCATATTTCTCGTTCA 305069 36 100.0 30 NNNNNNNNNN .................................... ATTGCCTTTTCCGTGATAGCCTCACAAATA 305135 36 100.0 30 NNNNNNNNNN .................................... TATAGCTCTGTTTTAACTGAGATTAATGAG 305201 36 100.0 30 NNNNNNNNNN .................................... GTGGTCTTGTGCACATTCATGTTTTAACCC 305267 36 100.0 30 NNNNNNNNNN .................................... GGCTTCCTTGGTGTCCGCCACGTACTTCTC 305333 36 100.0 29 NNNNNNNNNN .................................... CCATTGCAATTACGTTTCATAATAATTAG 305398 36 100.0 29 NNNNNNNNNN .................................... TGGTACTGTTTAGCACCACATTTTGTTAG 305463 36 100.0 30 NNNNNNNNNN .................................... ATACTCAACAGAGCATCCAATCAATACACA 305529 36 100.0 30 NNNNNNNNNN .................................... ACTCAAACATACTACTCCAGAAGGTAAATG 305595 36 100.0 30 NNNNNNNNNN .................................... CTATTTCTTTGATCAAAAATAGCTTTTAAA 305661 36 100.0 30 NNNNNNNNNN .................................... GCTTGCGGCGGACGGCTTGCAGCGCTTCCA 305727 36 100.0 29 NNNNNNNNNN .................................... CCTGCTGTACGAGTTCGTTCGCACCGTCG 305792 36 100.0 30 NNNNNNNNNN .................................... AACAAATCATTTTATTTAATTCTGACTCAT 305858 36 100.0 30 NNNNNNNNNN .................................... GGATATGGGATTATTTAGACCCCCGCTATC 305924 36 100.0 30 NNNNNNNNNN .................................... CCTTGGATGCTGAAGATGGTGGATTGTATA 305990 36 100.0 30 NNNNNNNNNN .................................... ATTATGCCGTAGTGCGAGAAAAAACGCCTC 306056 36 100.0 29 NNNNNNNNNN .................................... CATAAGTATGCAATCCACACATTAGTATT 306121 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 23 36 29 GTTTTCCAATCACTTAATTTTCCCGGGTACTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.89%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [26,366] Score: 0.18/0.18 # # Final direction: R [0,0.59 Confidence: HIGH] >NC_021033 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1539242 29 96.6 31 AGGCGATAAA ............................T AAAAGATATAAGAGGAAACAAAAACATAAAA 1539302 29 100.0 31 AAACATAAAA ............................. GCTTTCTAAGCTGGATCTTACGTCCTAAAAG 1539362 29 100.0 31 GTCCTAAAAG ............................. TATGAATATCAGCCACTACTACGTTTTCCCT 1539422 29 100.0 CGTTTTCCCT ............................. AACCAGTTTGTA ========== ====== ====== ====== ========== ============================= 4 29 31 GTTAACTACCGCATAGGTAGTTTAGAAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.52%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.30,-6.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [53.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [3751,818] Score: 0.18/0.18 # # Final direction: F [0.82,0.41 Confidence: MEDIUM] >NC_021033 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1438258 29 100.0 31 TTTAGCTACA ............................. TTTCATGATTGGACACACCGAAAAGGCTACC 1438318 29 100.0 31 AAAGGCTACC ............................. ATTACCTTATGAAGCTCTTGAAACTTTAGAA 1438378 29 100.0 31 AACTTTAGAA ............................. GACCAAATCGAGGCTGGCGTTGTAGATATTG 1438438 29 96.6 31 GTAGATATTG .....T....................... TTTACAGCTTCTGCATAGTTTTTTGCACGCA 1438498 29 100.0 TTTGCACGCA ............................. TCCTAATTAG ========== ====== ====== ====== ========== ============================= 5 29 31 AGTTAACTACCGCATAGGTAGTTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:65.52%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.90,-7.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [246,174] Score: 0/0.18 # # Final direction: F [0.78,0 Confidence: HIGH] >NC_021033 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1533493 28 100.0 32 ATATCTTTTA ............................ TCAAACCTTCTTTATCGACAATTTCTTGTAAT 1533553 28 100.0 32 TTCTTGTAAT ............................ GATCATATTGGGTGCCTGTTATCGACGAAGTC 1533613 28 100.0 32 CGACGAAGTC ............................ GCTCGCAAGATTGTTGAAGTCATTCAGAATGA 1533673 28 100.0 32 TTCAGAATGA ............................ TATCACGGACAATTTTTTACATGTATATTGAC 1533733 28 100.0 32 GTATATTGAC ............................ CTTTATCGATTTTTTGAATTTCTACAGATTCT 1533793 28 100.0 TACAGATTCT ............................ AGGGAAAACG ========== ====== ====== ====== ========== ============================ 6 28 32 TTTCTAAACTACCTATGCGGTAGTTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.29%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.00,-6.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [58.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1000,252] Score: 0.18/0.18 # # Final direction: F [0.45,0.37 Confidence: LOW] >NC_021033 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 804850 28 100.0 32 ATATCTTTTA ............................ TTAGTCTCTAATTGATCAATCTTAGCTTGCAA 804910 28 100.0 32 TAGCTTGCAA ............................ GTGATAAAGGATTTATTGCTGTCTATAAAAGC 804970 28 100.0 32 CTATAAAAGC ............................ CAGTCGGGGCTATTTCCCCAGTGTCCCTGTTT 805030 28 100.0 32 GTCCCTGTTT ............................ TTCGCATGCCTGCACATTTTCAAGAATGTGAG 805090 28 100.0 32 AGAATGTGAG ............................ TCGTTTAACATCGCAAGAGCATTGGTGCTTAA 805150 28 100.0 32 TGGTGCTTAA ............................ CTGGGTTATTGCCGTCATAAGTTATGTATTTA 805210 28 100.0 32 TATGTATTTA ............................ GTATTACATCCAAGAAGCCAATACATAAAAAC 805270 28 100.0 32 ACATAAAAAC ............................ AATTGATGTACAGGAATAAGAAACTTCTTAAC 805330 28 100.0 32 ACTTCTTAAC ............................ ATTTTTTTTTGTTGTTTTTTGTCAAGAATAAT 805390 28 100.0 32 CAAGAATAAT ............................ TTTTTTGTTTGATTGCACGACATAGCCAGTCA 805450 28 100.0 32 TAGCCAGTCA ............................ AAAACTTCTCTGATTTTAGGGCGGTCATTAAC 805510 28 100.0 32 GGTCATTAAC ............................ AGCTCCAACACCGATTGAGTCGTACACAACTT 805570 28 100.0 32 TACACAACTT ............................ TTAATTTGTAGCGAAAATTACATTTTTGAAGT 805630 28 100.0 32 TTTTTGAAGT ............................ GCTGGGTCTGTTAAATCTTTATATAGTTTATT 805690 28 100.0 32 ATAGTTTATT ............................ ATCAATCGAGGAAGTCTACTACACAATCGCAC 805750 28 100.0 32 ACAATCGCAC ............................ AAAATGCTTACTTCTACAACATCAGTCTAGAA 805810 28 100.0 32 CAGTCTAGAA ............................ GAAGAGTTGATTGTGACTGATATACCTTTCTA 805870 28 100.0 32 TACCTTTCTA ............................ ACAACATAATTAGTTGTCAACGATTTATTTTT 805930 28 100.0 32 ATTTATTTTT ............................ AGTAGTTGACTTGGAAACCCTCTCTTAAGAGA 805990 28 100.0 32 TCTTAAGAGA ............................ ATATATCAATACGATGGATTAAAGATTGTGTA 806050 28 100.0 32 AGATTGTGTA ............................ TATGTTAAAAGCGGTTCGTTGCTTTTTTTGCA 806110 28 100.0 32 TTTTTTTGCA ............................ ATTATGGCTTAACATTTAATGCATTTAAACGT 806170 28 100.0 32 ATTTAAACGT ............................ AAGTAGACGTTACGGATTTAGCTAGAATACTA 806230 28 100.0 32 TAGAATACTA ............................ TTACACCACCACTTGGATGATTGATTGTTATA 806290 28 100.0 32 GATTGTTATA ............................ GTTCTAATCATTGGATACGTGTTTGGGACTAT 806350 28 100.0 TTGGGACTAT ............................ CATACAAAAA ========== ====== ====== ====== ========== ============================ 26 28 32 TTTCTAAACTACCTATGCGGTAGTTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:64.29%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.00,-6.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [66.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [554,130] Score: 0.18/0.18 # # Final direction: R [0.18,0.64 Confidence: MEDIUM] >NC_021036 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1413639 28 100.0 32 GATAGGAGTT ............................ AGAGGTAAAAAATAAATATGAGTATGCATATG 1413699 28 100.0 32 TATGCATATG ............................ CAAGAGTTCCTCCACTTGCCCAGTTAGCACTT 1413759 28 96.4 32 GTTAGCACTT .........T.................. ATATGGCGTATCAATTGTGTGCCACATTACAA 1413819 28 100.0 32 CACATTACAA ............................ ATATCGCTCATCACATAAGGGCATCCAGTAGA 1413879 28 96.4 32 ATCCAGTAGA ...........C................ AGAAGAATATTTTGAAGCAATGCGAAGTGGTT 1413939 28 96.4 32 CGAAGTGGTT ...........C................ AAATATGCCTAACACAGCCTAGTAATTACAGA 1413999 28 96.4 TAATTACAGA ...........C................ TCCTAATTAGT ========== ====== ====== ====== ========== ============================ 7 28 32 GTTAACTACCGTATAGGTAGTTTAGAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.30,-6.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [450,174] Score: 0.18/0.18 # # Final direction: F [0.96,0 Confidence: HIGH] >NC_021036 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1543921 28 100.0 32 TGGTATATGT ............................ ATCTTATTCAGTAAGGCAAACCATTGCCCAAC 1543981 28 100.0 32 ATTGCCCAAC ............................ AAACACACCTGTCGGATTTCCAATTACAGAAT 1544041 28 100.0 32 ATTACAGAAT ............................ TGATATCGTACCTGCGCTTAATTGCCTATCTT 1544101 28 100.0 32 TGCCTATCTT ............................ TCAACAAAATGGAATGCTCCGACAATATAGTT 1544161 28 100.0 32 CAATATAGTT ............................ TACAGCGGTTTGAGACGGTTTTAGGTGTCTAC 1544221 28 100.0 AGGTGTCTAC ............................ TGTACAAAAAA ========== ====== ====== ====== ========== ============================ 6 28 32 TTTCTAAACTACCTATACGGTAGTTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.00,-6.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [63.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [214,130] Score: 0/0.18 # # Final direction: R [0,0.64 Confidence: HIGH] >NC_021036 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 1588317 25 100.0 35 NNNNNNNNNN ......................... CAACTCCTATCGGCTCGATATAATCTTGGTTATTT 1588377 25 100.0 35 NNNNNNNNNN ......................... CGCTGTGCTTATCGAATTGGTCAAAATTTTATTTT 1588437 25 100.0 35 NNNNNNNNNN ......................... CGTTGGTGATACTTTAACCTTTATTTATACAGCTT 1588497 25 100.0 35 NNNNNNNNNN ......................... CTAAATGACGATTTGGTAGACGTTGATTTATTTTT 1588557 25 100.0 35 NNNNNNNNNN ......................... CAAGATTTAGAGTGTTGATGTCTCCATTTGATATT 1588617 25 100.0 35 NNNNNNNNNN ......................... CAGTGGAGGGCTGTATATTGAGGTTCGTCCAGCTT 1588677 25 100.0 35 NNNNNNNNNN ......................... CGGCAACAGAAGGCGATTCACCATAAACCACTATT 1588737 25 100.0 35 NNNNNNNNNN ......................... CAATACTTATTTTAAGGTAGCAAATCAAGTATTTT 1588797 25 100.0 35 NNNNNNNNNN ......................... CTTCTTTAGGCAACAAAAAACCCTGCTCTTGCATT 1588857 25 100.0 35 NNNNNNNNNN ......................... CGATTATCATAAATACCCTCCCAGTCTTTATAATT 1588917 25 100.0 35 NNNNNNNNNN ......................... CACGCCCTTGTTGTATATAACCTTAATACGATTTT 1588977 25 100.0 35 NNNNNNNNNN ......................... CCAGAAGCAGCAAAAGTACCACTCGCACAAATTTT 1589037 25 100.0 31 NNNNNNNNNN ......................... CACTAGAGGAAAAAATAAGAGTAAATGACGA 1589093 25 100.0 35 NNNNNNNNNN .G.T.......GTATA.......T. GAAAACATATACCAGCGAATAAGTAAGCTCTTAAG 1589153 25 100.0 35 NNNNNNNNNN GG.T.......GTATA.......T. GAAAATATACCACAGAACCAATATCGGGTGATGCA 1589213 25 100.0 35 NNNNNNNNNN .G.T.......GTATA.......T. GAAAAAGATTCTTACTCTGACAAGAACCAACATAC 1589273 25 100.0 36 NNNNNNNNNN .G.T.......GTATA.......T. GAAAAAATCGTCATTTACTCTTATTTTTTCCTCTAG 1589334 25 100.0 35 NNNNNNNNNN .G.T.......GTATA.......T. GAAAATAACCAAGATTATATCGAGCCGATAGGAGT 1589394 25 100.0 35 NNNNNNNNNN .G.T.......GTATA.......T. GAAAACGTTAAATATAAGAAACTCTATGAAGAGAG 1589454 25 100.0 35 NNNNNNNNNN CG.T.......GTATA.......T. GAAAATTTCAGATATAAAATCTGTGTGTTTAAACA 1589514 25 100.0 35 NNNNNNNNNN AG.T.......GTATA.......T. GAAAATTTAAATCAAGGGCTGAAGCGGAAAGTGAA 1589574 25 100.0 35 NNNNNNNNNN GG.T.......GTATA.......T. GAAAATCCCCATCCCAGGCTTGCACCCAGCCCCTA 1589634 25 100.0 1 NNNNNNNNNN .G.T.......GTATA.......T. NNNNNNNNNN ========== ====== ====== ====== ========== ========================= 23 25 34 TCTAAACTACCTATACGGTAGTTAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.50,-3.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-44] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [56.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [2876,4210] Score: 0/0.18 # # Final direction: R [0.41,0.64 Confidence: LOW] >NC_021036 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1588315 28 100.0 32 CCCTGTGGAT ............................ AACTCCTATCGGCTCGATATAATCTTGGTTAT 1588375 28 100.0 32 TCTTGGTTAT ............................ GCTGTGCTTATCGAATTGGTCAAAATTTTATT 1588435 28 100.0 32 AAATTTTATT ............................ GTTGGTGATACTTTAACCTTTATTTATACAGC 1588495 28 100.0 32 TTTATACAGC ............................ TAAATGACGATTTGGTAGACGTTGATTTATTT 1588555 28 100.0 32 TGATTTATTT ............................ AAGATTTAGAGTGTTGATGTCTCCATTTGATA 1588615 28 100.0 32 CCATTTGATA ............................ AGTGGAGGGCTGTATATTGAGGTTCGTCCAGC 1588675 28 100.0 32 TTCGTCCAGC ............................ GGCAACAGAAGGCGATTCACCATAAACCACTA 1588735 28 100.0 32 TAAACCACTA ............................ AATACTTATTTTAAGGTAGCAAATCAAGTATT 1588795 28 100.0 32 ATCAAGTATT ............................ TTCTTTAGGCAACAAAAAACCCTGCTCTTGCA 1588855 28 100.0 32 TGCTCTTGCA ............................ GATTATCATAAATACCCTCCCAGTCTTTATAA 1588915 28 100.0 32 GTCTTTATAA ............................ ACGCCCTTGTTGTATATAACCTTAATACGATT 1588975 28 100.0 32 TAATACGATT ............................ CAGAAGCAGCAAAAGTACCACTCGCACAAATT 1589035 28 100.0 CGCACAAATT ............................ ACTAGAGGAA ========== ====== ====== ====== ========== ============================ 13 28 32 TTTCTAAACTACCTATACGGTAGTTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.00,-6.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [2874,4806] Score: 0/0.18 # # Final direction: R [0,0.64 Confidence: HIGH] >NC_021036 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1589214 29 100.0 31 GGTGATGCAT ............................. AGATTCTTACTCTGACAAGAACCAACATACT 1589274 29 100.0 32 CCAACATACT ............................. AATCGTCATTTACTCTTATTTTTTCCTCTAGT 1589335 29 100.0 31 TTCCTCTAGT ............................. TAACCAAGATTATATCGAGCCGATAGGAGTT 1589395 29 100.0 31 GATAGGAGTT ............................. CGTTAAATATAAGAAACTCTATGAAGAGAGC 1589455 29 100.0 31 TGAAGAGAGC ............................. TTTCAGATATAAAATCTGTGTGTTTAAACAA 1589515 29 100.0 31 GTTTAAACAA ............................. TTTAAATCAAGGGCTGAAGCGGAAAGTGAAG 1589575 29 100.0 31 GAAAGTGAAG ............................. TCCCCATCCCAGGCTTGCACCCAGCCCCTAT 1589635 29 100.0 CAGCCCCTAT ............................. ATAAAATTTTG ========== ====== ====== ====== ========== ============================= 8 29 31 GTTAACTACCGTATAGGTAGTTTAGAAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.97%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.30,-6.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [324,4205] Score: 0.18/0.18 # # Final direction: F [0.37,0.18 Confidence: MEDIUM] >NC_021036 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1603487 28 100.0 32 TGGTATATGT ............................ TGGAGTGTAAGGTGGGAAGTGGCAGAACGGGT 1603547 28 100.0 32 CAGAACGGGT ............................ GCTATGCCAATTTACTTTAACACCGCAAAAGA 1603607 28 100.0 32 CCGCAAAAGA ............................ CAATGTGATTGATACAGTCACACGTTTCTTTA 1603667 28 100.0 32 CGTTTCTTTA ............................ TATTAAAGAAAAAACTGATGAGGCATGTGCAT 1603727 28 100.0 GCATGTGCAT ............................ ACTAGAGGAAA ========== ====== ====== ====== ========== ============================ 5 28 32 TTTCTAAACTACCTATACGGTAGTTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:67.86%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.00,-6.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [2141,1235] Score: 0/0.18 # # Final direction: R [0,0.37 Confidence: MEDIUM] >NC_021038 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1925504 32 100.0 37 GATGCAACGG ................................ TTGTCCCGGCATCCTACGGACGGGTTGGGACAATACA 1925573 32 100.0 36 GGACAATACA ................................ GGCTCTACGGGAATCGGGTCGATGGGGGCAAGATGC 1925641 32 100.0 GGCAAGATGC ................................ CGGCAAGGAC ========== ====== ====== ====== ========== ================================ 3 32 36 CTTTTAAAGCTTCCTTTAGCAGGGTTGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:59.38%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-2.10,-2.20] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [185,524] Score: 0.18/0.18 # # Final direction: R [0,0.18 Confidence: MEDIUM] >NC_021038 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1926195 30 100.0 35 GACGTAACGG .............................. TTGTTGGGATGGTGGACAATATAATATCCACCAGT 1926260 30 100.0 36 ATCCACCAGT .............................. GACAGCTCGCAGGTCCCCGCCAGGTATGCCGGGACC 1926326 30 100.0 37 TGCCGGGACC .............................. TACATCGTCCTCGACCTCCTCGTCGTGTCGTGCCCAG 1926393 30 100.0 36 TCGTGCCCAG .............................. AAGGATGACCATACAAGCGACAGGAGGTGCTCCATG 1926459 30 100.0 36 GTGCTCCATG .............................. TGGTGGCCCTGTCGAGGTGCGGGCAAACAGGCGGAA 1926525 30 100.0 36 ACAGGCGGAA .............................. CGGATTCCTGAATGCGAATCGGATGCCGCTTCGTGC 1926591 30 100.0 37 CGCTTCGTGC .............................. AAGGGCTCCGAAGACCTTCTCCCTCAAAACCCCATCC 1926658 30 100.0 37 AACCCCATCC .............................. GGTAATCGGCCTCGACTTTCACCGACAAGGTTTTCTT 1926725 30 100.0 37 AGGTTTTCTT .............................. AGGTCAAGCTTACGCGAAAGATAAACGTCCAGATCGA 1926792 30 100.0 38 TCCAGATCGA .............................. TACCCACACTCCCTAAGCGCATAGGCGATATGGCGCCA 1926860 30 100.0 37 TATGGCGCCA .............................. GTCGAACGCGAACGAAGAACGCAAGACGCGCTGGAGC 1926927 30 100.0 37 GCGCTGGAGC .............................. TCCGCGCCTCTGGCGGAACTTCATCAAGGAGGCGGAG 1926994 30 100.0 36 GGAGGCGGAG .............................. AAGATACGAGTGTTCCACGTTCGCCTCAGGGGCGTT 1927060 30 100.0 38 CAGGGGCGTT .............................. CAGGGCTCGCCCTGCAGAGCCTCCTGGAGCACGGGGTT 1927128 30 100.0 37 GCACGGGGTT .............................. AGTATTGTGAGATGGCGAAGAAGAGGCTTGAGGAGCT 1927195 30 100.0 35 TTGAGGAGCT .............................. ATGACGATCCTCTCCGGGAACACATCGATTCGCTC 1927260 30 100.0 37 CGATTCGCTC .............................. TAGCCCATATCCCTTGATACAATATCCGTATTCCCAA 1927327 30 100.0 37 GTATTCCCAA .............................. AGGAGAAAATTTCGGAACTTCGGGAGAACGCTGAGGC 1927394 30 100.0 37 ACGCTGAGGC .............................. TCCGTGGAGCTGCAGAGGCCCTCCAGAATCAGCCCCG 1927461 30 100.0 38 ATCAGCCCCG .............................. GTAAAAAAACTGCAAAAATGGGCTCTCAGAGCGTCACC 1927529 30 100.0 36 GAGCGTCACC .............................. CCTTCTCTTTTGTAGTCATTTTTGTTCCTCCTATTT 1927595 30 100.0 37 CCTCCTATTT .............................. TCTGCATGGGGACAGGGTGTATCTACCTTCCCTATAT 1927662 30 100.0 37 TTCCCTATAT .............................. AGTACTTGAAAACACTCGTCTTCTTTGACTTGGGGCT 1927729 30 100.0 37 ACTTGGGGCT .............................. TGAGGAAGCAGGGATCGGTGTAAACACAGACAGTGAC 1927796 30 100.0 37 AGACAGTGAC .............................. CTGAGTCTTCCCGTGGTAGGCGTCATAAACACTGATT 1927863 30 100.0 35 AACACTGATT .............................. TTCATTCTGCAGCCTCCTCACTCGATTACAGTTCC 1927928 30 100.0 36 TTACAGTTCC .............................. ATGGGGGACAGGAAGATGCGGGCGAAGGCTTCGATG 1927994 30 100.0 37 GGCTTCGATG .............................. TCGCAGACGATTGGGATATGAGGTCCCGGCCTGCAGC 1928061 30 100.0 37 GGCCTGCAGC .............................. GCATTTGCAACACTTTCCTCAAGTGCTAAGAGAAAAC 1928128 30 100.0 38 AAGAGAAAAC .............................. GGGAACATGGGATAGATAGATCGGAAAAGTGCAGGCTA 1928196 30 100.0 37 GTGCAGGCTA .............................. TAAGGTGAGTCATAGCAACGGTTTTGCGGACCCAATT 1928263 30 100.0 35 GGACCCAATT .............................. TTCAGGAAGGCGACGAAGGCCTCCCCGATTTCCAT 1928328 30 100.0 37 CGATTTCCAT .............................. TCCGTAGAGCTGTAGAGGCCCTCCAAGATCAATCCTG 1928395 30 100.0 35 ATCAATCCTG .............................. ATGCAGAAGTGGCCGCAGAGCTCGCGGCGATCGAG 1928460 30 100.0 36 GGCGATCGAG .............................. TTTCCCGGAGACCGCCAAGCTGTCGAGACCGGCGTG 1928526 30 100.0 38 GACCGGCGTG .............................. ACAAACTCCATTGTGCACACATATCCGTACCACAGGCC 1928594 30 100.0 35 ACCACAGGCC .............................. CAGAATGTGGGCGACTCCGAAGGCCGGGGACGCAA 1928659 30 100.0 36 GGGGACGCAA .............................. CCCGGTGTGGCCAGCGTGTACGGGAGCCTGGACCTT 1928725 30 100.0 38 CCTGGACCTT .............................. TTTTCCTTCCCTTCATAAGCCCTCTTGGAGCTTGGATT 1928793 30 100.0 37 AGCTTGGATT .............................. AAATGAGCTCTGAGGAAGTGGACGCCCGGCTGCGGCA 1928860 30 100.0 37 GGCTGCGGCA .............................. TGATGTGGGCGCAGCCTTCGAGACTGGAATTGTACAC 1928927 30 100.0 37 AATTGTACAC .............................. CAGTCTCGCCGGACGGTCGTACGCTGTCGGGGAAACT 1928994 30 100.0 38 CGGGGAAACT .............................. ATGCCATTCGTCTGTATCACAGGCTGCACGGCTTTAAC 1929062 30 100.0 36 CGGCTTTAAC .............................. AGGTCCACGATGCGGGAAGCAAGCCGTACCATGGTC 1929128 30 100.0 36 TACCATGGTC .............................. TAAATATAGGTCCTGCAAGGGACCACACAAAATGAA 1929194 30 100.0 36 ACAAAATGAA .............................. ATCCTGATATTTTCCCTCAGCGACAACACTTTACGC 1929260 30 100.0 38 CACTTTACGC .............................. TAGGTAGCTGTAAGACCGGTCGTACCAACGGTTTAGCT 1929328 30 100.0 35 CGGTTTAGCT .............................. TCGTAAGCGATAGCCCTTTCAAGCCAATCCCACTC 1929393 30 100.0 38 AATCCCACTC .............................. TCGCTACTGCCATGCGACGGAAGAGTCGAGGCGGGGCA 1929461 30 100.0 36 AGGCGGGGCA .............................. GCGCAAAGGTTAACAGAGGAATATCCCCCTGGCTTA 1929527 30 100.0 36 CCCTGGCTTA .............................. TCAAGGTCTTCGGCGAGGTGTTTGAGGCTATGGCTA 1929593 30 100.0 35 GCTATGGCTA .............................. CAAGCTCGCCTCCGCCCCAGGACAAAAGCGGACAC 1929658 30 100.0 35 AAGCGGACAC .............................. CCGGAGGTGAATGACACCAGCACGGCATCACCGGG 1929723 30 100.0 37 CATCACCGGG .............................. GATGGCGCTTTCGTCTTCCTTCGGGGCCTCCAGCCAG 1929790 30 100.0 35 CTCCAGCCAG .............................. CCATTGCCGGAAGGGGCGCCCAAACCGCTCGCCGA 1929855 30 100.0 35 CGCTCGCCGA .............................. CAGAGTACCTCAATGCCCACTCTGGGATGGCCGGG 1929920 30 100.0 37 GATGGCCGGG .............................. CAGAAAAGGCAGCGGCAATGAAGGGCTCCCAGGTTAA 1929987 30 100.0 37 CCCAGGTTAA .............................. AAGATATGATTTTTTCAGCAAAAACAAGAGGTTTTTC 1930054 30 100.0 37 GAGGTTTTTC .............................. GGGTCTTGGTATTCGCTGCGCTTTGGGAGCATCTCTG 1930121 30 100.0 37 AGCATCTCTG .............................. CTGTCCTCGTAGGTGGCGGAATACTCGTAAAGCTCGC 1930188 30 100.0 36 TAAAGCTCGC .............................. CCGCAGTCGGCGGGGTCGTGCAGGTCCCCGGAGACG 1930254 30 100.0 38 CCCGGAGACG .............................. GTACTGGGTTGACTGGCTGGACCTGCCCCCCATCCACC 1930322 30 100.0 37 CCCATCCACC .............................. GCGTCGCCCCGGCCTTCATAATTTTGGATACGACATC 1930389 30 100.0 35 ATACGACATC .............................. CAAAACAGCAAAGGAGACGCCCCACAAAGAAACCG 1930454 30 100.0 37 AAAGAAACCG .............................. CGGATATCTTCAACAACGCCTCGAATCAATCCGCCTT 1930521 30 100.0 36 AATCCGCCTT .............................. CGGATGAACTGCCGATTCGACGGCGGAAGCCGCCCT 1930587 30 100.0 36 AAGCCGCCCT .............................. TACGCCGCTGGAACGAACGGCACGCGGCATCGAGGA 1930653 30 100.0 35 GCATCGAGGA .............................. GCTGAACGCTTCGCGGCCCTCGTCCTCGCTAAGTG 1930718 30 100.0 37 TCGCTAAGTG .............................. GCTGAACGCTTCGCGGCCCTCGTCCTCGCTAAGTGCT 1930785 30 100.0 37 GCTAAGTGCT .............................. AACATGGCCTCATAGGTCCCGGTCATGTTCGGATGGG 1930852 30 100.0 36 TTCGGATGGG .............................. TGGCTACGAGTTCAGGTCTGCCGGTATCTTTTCCTT 1930918 30 100.0 37 TCTTTTCCTT .............................. CAGATACTCGGCGGCGCCGCAACAAGCGTCATGAACG 1930985 30 100.0 37 GTCATGAACG .............................. CGCCGACGCCTCGGCGGACGAGGCATGGCACATCCCG 1931052 30 100.0 38 GCACATCCCG .............................. CGATACTCCGCAGCGTCGCCCTCCCAGAAGATACGAGG 1931120 30 100.0 37 AGATACGAGG .............................. GACAACCGAGTGTCCACGAAAAGCACCCAGTCGCCAT 1931187 30 100.0 36 CAGTCGCCAT .............................. CGCATGAATTCACTCCCGGCTATGGCCGCGATGCGG 1931253 30 100.0 37 CGCGATGCGG .............................. TGATGGGGAGGCGGAACCCGACGAGGAGGAACCTTCG 1931320 30 100.0 35 GGAACCTTCG .............................. TTACATTCGCCACGGCTCGTCTAAACGCGCTCACG 1931385 30 100.0 36 CGCGCTCACG .............................. TCGTAGGGGGTGATGCGAAGTCGGGAGACAATTCTC 1931451 30 100.0 39 GACAATTCTC .............................. CACCTGCGACCCTGATGTCTTCGCCCAACGTCGCAGGCT 1931520 30 100.0 37 GTCGCAGGCT .............................. TACAGGGCATCACTAACAGCATCGGGCCATTCATGTC 1931587 30 100.0 36 CATTCATGTC .............................. CGTCATGGGGAATCTGACGGGCAGTGGACCGAGGAA 1931653 30 100.0 36 GACCGAGGAA .............................. ATGCGCCGGTCGTCGTGCGAGAACTCCCCGATCTTG 1931719 30 100.0 36 CCCGATCTTG .............................. GAATGCTGGTGGCAGGAATCCTGTTTGATGCGGTAC 1931785 30 100.0 37 GATGCGGTAC .............................. CGAGGATATCACTGCTCTGGCTGAGCAATTCGGCATC 1931852 30 100.0 37 ATTCGGCATC .............................. GGCTGAAACGGTCGGAGTCCGGAGGCGGGGTCGGCAT 1931919 30 100.0 36 GGGTCGGCAT .............................. ACGATTTTGTGCCTCGTTTTGTGCCTCATCAATGAA 1931985 30 100.0 36 CATCAATGAA .............................. TAGCTCTATCACGGCAGAGCGCAGGCCAACGCGTGG 1932051 30 100.0 37 CAACGCGTGG .............................. AGCGTCTTGGAGGCGATCTGCGTCTCTCCTATCCACG 1932118 30 100.0 36 CCTATCCACG .............................. GTCGGCCCCCCGCGATCAGCCCGCGACCTCGGCTTC 1932184 30 100.0 37 CCTCGGCTTC .............................. CGCTGAGGGGCATACGCTCCAGCAGGTCGGCGAAGTA 1932251 30 100.0 35 CGGCGAAGTA .............................. CGTTGACCGGCATCCTGGGTGGAGATGTCGTATCC 1932316 30 100.0 36 TGTCGTATCC .............................. AAGGTCGATGAGATTGGAATAGGGCGTGGAGTTGTC 1932382 30 100.0 37 TGGAGTTGTC .............................. CGACTACGCGCAGCATGTGGCCATTGGAGAAAGCCTC 1932449 30 100.0 36 AGAAAGCCTC .............................. CACGCTTCCTTCCCCCGCTACATCCAAGGGGCTGTC 1932515 30 100.0 36 AGGGGCTGTC .............................. TCGCTGCCGGGCTCGGTGTCCGAGGAAGCCATGAAG 1932581 30 100.0 35 AGCCATGAAG .............................. TTTACCCAGCGTAACGGTTTAAGGAGGTGTCGTCG 1932646 30 100.0 37 GGTGTCGTCG .............................. TGCCAAGCAGGGACCTCCCGGCCCGCGGGGCCCTGTG 1932713 30 100.0 37 GGGCCCTGTG .............................. ATGCATGATCAACGAAATTCTTAAGTGTTTGTTTGCG 1932780 30 100.0 37 TTTGTTTGCG .............................. GCAGGACACCATACTTCTTGCCTTGCCAGCTCTTCGG 1932847 30 100.0 35 AGCTCTTCGG .............................. ATCTGATTCGGACGAAGGACAAGGACGGGCGCGGG 1932912 30 100.0 36 CGGGCGCGGG .............................. ATACGTCGCCAGTGAACACCAGGTAATCCTGCTCGC 1932978 30 100.0 37 TCCTGCTCGC .............................. CAAGCCCCTTGAATGCCTGGGGGAATCGCTGAAACGC 1933045 30 100.0 35 GCTGAAACGC .............................. TGCTGTGGGGGATAGTAAAGTGGCGACCTCCCTAG 1933110 30 100.0 36 ACCTCCCTAG .............................. AGCAGCGCCAGGGCGTCCTCGTCCGCCTCCAGCACG 1933176 30 100.0 37 CTCCAGCACG .............................. CCAGGCGTTCCATCAGAACCGCGAGGCGTGGGACCTG 1933243 30 100.0 37 GTGGGACCTG .............................. ATCGTTTCCATGGTCTTCTCCTCCTGCGGCCCGTGGC 1933310 30 100.0 37 GGCCCGTGGC .............................. CCTGGGCGCGCAGAAGCTGGCGATCAAGCCGCCACTC 1933377 30 100.0 35 GCCGCCACTC .............................. GTCGTCGGAGCTGAGGTTGTTCTGTGCTGTGGGGG 1933442 30 100.0 36 GCTGTGGGGG .............................. AGGCTGGGAAGCTGCCCAACCTGGCGTACTGCAAGC 1933508 30 100.0 36 TACTGCAAGC .............................. ATGTGGTGCTCTGCGCAGAACTGCGAGCTGCTCTTC 1933574 30 100.0 37 GCTGCTCTTC .............................. GATGACGCCTGAGCCGGGCGTCTGGGGCGATCTGGAG 1933641 30 100.0 37 CGATCTGGAG .............................. TCCCAGACCTACGGGCTGGACCCGTTCGCCAAGGAAA 1933708 30 100.0 38 GCCAAGGAAA .............................. AAAAAATCCGAAGGGGGTTGGGGTTATGAGCGAAGAAC 1933776 30 100.0 37 AGCGAAGAAC .............................. CGAGCCCCTGCGGTTCCAGTTTACCGGTGAGGGCGAA 1933843 30 100.0 37 TGAGGGCGAA .............................. AGCCCTTGTGCCAGATACCCACCAGGTCCTGAACGGA 1933910 30 100.0 36 CCTGAACGGA .............................. CCTAAAAATCAATGACCATTTGGGCGTTGTTTTTAC 1933976 30 100.0 TTGTTTTTAC .............................. CACCGATCAT ========== ====== ====== ====== ========== ============================== 118 30 36 CTTCCTAAACTTCCTTAGAGGGATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.40,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [56.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [522,1132] Score: 0.18/0.18 # # Final direction: F [0.64,0.18 Confidence: MEDIUM] >NC_021038 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1935136 30 100.0 36 CGTCAGTGGC .............................. TCTCGTGATACAATAAAGGTCCTCCTAGCTATTCGA 1935202 30 100.0 36 AGCTATTCGA .............................. CGAATGCCGCGGTCTTTGGGCCTGGTTCTCCCCAGG 1935268 30 100.0 35 TCTCCCCAGG .............................. CGCTAACTCGCCTCAGGCTGAGTCCCGCCAGTCGA 1935333 30 100.0 38 CGCCAGTCGA .............................. TAGCTCCCCTCCTCCACCTCAAACACGCAGGTCTCGTC 1935401 30 100.0 36 AGGTCTCGTC .............................. CGGGCCAGGAGCCGGGAATCGATTCACGCTTTCGCC 1935467 30 100.0 36 CGCTTTCGCC .............................. TCTACCCTGATCGGGTAATAGATATCAAAGGCCCGA 1935533 30 100.0 35 AAAGGCCCGA .............................. TCTTTCAGGAGCGCACAGCCAAGCGACATCCACGG 1935598 30 100.0 36 ACATCCACGG .............................. CGGGAACGTGGACCACCACGACTCTCCGCTTGGCGC 1935664 30 100.0 38 CGCTTGGCGC .............................. CCTGTCTCGACATGGCCATATAGGACAAGGTGCTTCCT 1935732 30 100.0 37 GGTGCTTCCT .............................. TAGCTCCGTATCTCCTCCACGGTGCGTTTTACGCCTC 1935799 30 96.7 36 TTTACGCCTC ....T......................... CGGCCCCGGCCCCCTGCTGGGCCGTCTGCGCCGCCT 1935865 30 100.0 36 TGCGCCGCCT .............................. AGCCCTGTGACCTCAACTCCTCAATCATTGCGTTGA 1935931 30 100.0 37 ATTGCGTTGA .............................. ACAAGTAGTGGGCCTTTCGGTGAAGCCCGAAGGTCCC 1935998 30 100.0 38 CGAAGGTCCC .............................. ACGTCGCGTCCTCCGAAGGCAGGATAAAGGTATCTCTC 1936066 30 100.0 36 GGTATCTCTC .............................. CTTGTCTTCGGCGACCTTCACGAGGTTCGTCTCGTT 1936132 30 100.0 37 TCGTCTCGTT .............................. CACAGAGGCAAGGACGACCCCCTGCCGCCACCCATGG 1936199 30 100.0 37 CCACCCATGG .............................. TCGAGGTGCTGACGAGCAGGCGGAAGCGCCGCGAGGC 1936266 30 100.0 38 GCCGCGAGGC .............................. GCGCGGCGTCCTCTATTAAGCGGTTCCCTGCCTCGATC 1936334 30 100.0 36 TGCCTCGATC .............................. AACGAGAGGGGGGCGGCGAAAGCCGCTCCTCTTCTT 1936400 30 100.0 37 TCCTCTTCTT .............................. CGGCGAGCGATATCAACAAGACCCGCATGGCCGCACA 1936467 30 100.0 37 TGGCCGCACA .............................. CACTGACGAAATACCAACCTGCCGCTGTAATTTCGTC 1936534 30 96.7 37 TAATTTCGTC ....A......................... ATATCTGCGGCGATACTAAGCCTCAACAATAGATTCC 1936601 30 100.0 35 AATAGATTCC .............................. CGGGGGTCTCGTCGCCGGACCTGATGTCGATGGTC 1936666 30 100.0 35 GTCGATGGTC .............................. GAGAGCGCGTGGAGTGTCCCATCTGCCATGAGGAG 1936731 30 100.0 37 CCATGAGGAG .............................. GATATCCTCTTCGAGGTTTTCGATGCGTTCCAGACGC 1936798 30 100.0 37 TTCCAGACGC .............................. AAGGCGTCAAGGATGCCGTTCATCAGGACGCCGACGC 1936865 30 100.0 37 ACGCCGACGC .............................. GCCAATACGTCAAGGTGGAGTTGGTGGTGCTGGGGCC 1936932 30 100.0 36 TGCTGGGGCC .............................. TGCTGAATCTGTCGCCGCTATGTTGGATGATGGGCT 1936998 30 100.0 37 ATGATGGGCT .............................. AAGGCGTCAAGGATGCCGTTCATCAGGACGCCGACGC 1937065 30 100.0 36 ACGCCGACGC .............................. CCGGTGAGGGTGAAGGCGGAGAGGTTAAGCAGCTGA 1937131 30 100.0 37 AAGCAGCTGA .............................. GGATATCAATGTTGCATCCGACAGCGGGACGCGAAGC 1937198 30 100.0 36 GACGCGAAGC .............................. TCGAAGAAATAAGTTCTGAAACCAGGACGAGGGCTT 1937264 30 100.0 36 ACGAGGGCTT .............................. CGCGTAGAGCTCGCCGAAGATCGGCGTCACCTCGCC 1937330 30 100.0 37 TCACCTCGCC .............................. CGGGCAGGCGGGGGCAGGCAAGACACACCTCATTCGC 1937397 30 100.0 37 CCTCATTCGC .............................. CGTAAATTCTGCCCATTCTGCGGCCCTGTTCTCGCCC 1937464 30 100.0 38 GTTCTCGCCC .............................. CCTGTGCATATGGACCACCAGAATATATCCCTGTCCCT 1937532 30 100.0 37 CCCTGTCCCT .............................. TATACAGGAGGGACAGGGATATCCTGATCCATATGGA 1937599 30 100.0 35 TCCATATGGA .............................. GGGATGCGGAGGCCCCTGAACGCGGTCGTAGTGCG 1937664 30 100.0 35 TCGTAGTGCG .............................. TCGGTGCCTGCCATATCCGGAAGTGGTGGAACATG 1937729 30 100.0 36 GTGGAACATG .............................. TAAGGTTGTACCACTCGCATTAAAGTGGTAAAGCCT 1937795 30 100.0 37 GGTAAAGCCT .............................. CGCTGATGAACCGGCACTCCACCCCGACCGGCCCCAT 1937862 30 100.0 35 CCGGCCCCAT .............................. AAACTGTCCAACTTTAGGGGATATGTTGATTTGTC 1937927 30 100.0 36 TTGATTTGTC .............................. CGGATAGCGACGAGCAGCGTGTGCGGCTGGCAGCGG 1937993 30 100.0 37 CTGGCAGCGG .............................. CTGAGTTTTACGCTAGGCAGGAATTTGTGATCTTCTC 1938060 30 100.0 36 TGATCTTCTC .............................. GTCCTTTCGGTCCCCCTGATTCGGCTCGGCATCGTC 1938126 30 100.0 37 CGGCATCGTC .............................. ACGTCGCTCGACGCCAGCATGAGGAACAGGTCCGCGT 1938193 30 100.0 35 AGGTCCGCGT .............................. TCGTTGGGAGTGATACGAAGTCGAGACACTATGCG 1938258 30 100.0 38 ACACTATGCG .............................. TTCTTTCGGAGGAGACGGGGTATAATGACCCCGCCTCC 1938326 30 100.0 36 CCCCGCCTCC .............................. GCCCGCCCTGCATCCCGGCCGCCAGGGTTGTGAGGG 1938392 30 100.0 37 GTTGTGAGGG .............................. CCGGAGGAACACCACGCACCGGTCCCCGCCGAACGCC 1938459 30 100.0 37 GCCGAACGCC .............................. TCAGGCGTTTCATCGGAACCGCGAGGCGTGGGACCTG 1938526 30 100.0 38 GTGGGACCTG .............................. TCGTCCGTCCAATCTCCGGCTGGATGCGCCGAGCGCAC 1938594 30 100.0 38 CCGAGCGCAC .............................. TCCGCCCAGCAGGCCCCCGCTCTGCGGCGTTCCTCCGG 1938662 30 100.0 GTTCCTCCGG .............................. ACAATGTAGA ========== ====== ====== ====== ========== ============================== 54 30 36 CTTCCTAAACTTCCTTAGAGGGATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.40,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [30.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [1130,1430] Score: 0/0.18 # # Final direction: F [0.64,0.41 Confidence: LOW] >NC_021038 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1940120 30 100.0 36 CTTCGCTGCG .............................. CCGTTATTTACGTTCCAATCAGCCGGCAGTTTCATC 1940186 30 100.0 38 CAGTTTCATC .............................. GAGCGTAGCGTCGCCAGATACCCGCGCGCCACAAGCTC 1940254 30 100.0 37 CCACAAGCTC .............................. AGGGCGGCATCCGGGGAATACGGAGTGTGGCGTAACA 1940321 30 100.0 37 TGGCGTAACA .............................. TTCAGCGAGGAGGCGTCCAGCCCCTGGTTGTACCGGG 1940388 30 100.0 35 TTGTACCGGG .............................. ACGATGTTGTAATTCGCAAACAGCTTACGTCCCTG 1940453 30 100.0 35 TACGTCCCTG .............................. CTGAACCTTCTCAGTGGCCATGTCGAACAGCTCCA 1940518 30 100.0 35 AACAGCTCCA .............................. ACACTGAGAAAATCTCTATATCCCTGAGAGGTCAA 1940583 30 100.0 36 GAGAGGTCAA .............................. CCCGGAGCGCCGGGCACGAGCCGAACGCCTGATGGA 1940649 30 100.0 35 GCCTGATGGA .............................. CGGCAATGTCCCTGTTTTAAGGGGCGGGGGGAGGC 1940714 30 100.0 37 GGGGGGAGGC .............................. CTCTGTCAGGAAGCGGTCGGCCGCTTCGATCAGCTTC 1940781 30 100.0 36 GATCAGCTTC .............................. GACCGATGGGCTGCACTTCCTTCCCTGGAAGACCTA 1940847 30 100.0 37 GGAAGACCTA .............................. ATTTGAACATGCATAGCGCTAACGACCTCCCGCCGGA 1940914 30 100.0 36 TCCCGCCGGA .............................. CGAGCACTCGTGCGGGCTGTAGGGGCTCTTGGTCAT 1940980 30 100.0 36 TCTTGGTCAT .............................. CAGTAGTGTTCTGCCACTCCCGCCCCTGTTGGGTTT 1941046 30 100.0 36 TGTTGGGTTT .............................. TAGCGCCCCTTGCGCCCTTTTCAAGGGCCCGGTTCG 1941112 30 100.0 37 GCCCGGTTCG .............................. GCAACCCGCCATGGCGAGCTTCCCAATCCGCAACATG 1941179 30 100.0 37 CCGCAACATG .............................. CAGGCAAATCAAGAAGGAGGCGACGGCATGATGCGGG 1941246 30 100.0 37 ATGATGCGGG .............................. TCCGTGGCGCCGACTCCAAGAAACAGGACTCTGGCGG 1941313 30 100.0 37 ACTCTGGCGG .............................. TCTCGTGCTAACTTAGCAGAAAAGCTGGAAGTGGGCC 1941380 30 100.0 37 GAAGTGGGCC .............................. CCTACCCAAGAAACACCCCGTCAAAGATGGGCGGAAA 1941447 30 100.0 37 TGGGCGGAAA .............................. TAGATTGGCTGCCATATCCAATCGAGGCGCTCGGTGG 1941514 30 100.0 36 CGCTCGGTGG .............................. CTAAAAAGTCCCAATATGGGAAGATTAATACATGGG 1941580 30 100.0 37 AATACATGGG .............................. CGTTCGCGTCGAAATACGGCAGTCCGAAGGGGATATC 1941647 30 100.0 37 AGGGGATATC .............................. GTCGATCGTCGGCGCAGGCGGCGGCGTCTCCACCTTC 1941714 30 100.0 37 CTCCACCTTC .............................. TCCGATACCTGGGGTTCTGAAAACTGCGCGGACGATT 1941781 30 100.0 38 GCGGACGATT .............................. GTCGCCCCGCTGGTATGGAACCGGCGAACGGGAACGCT 1941849 30 100.0 38 CGGGAACGCT .............................. GGGTTTGCGGAGTTTTTAAAAATGCTGCTGTGGCAGCC 1941917 30 100.0 37 TGTGGCAGCC .............................. CGTCAAGAAATTGCCCATCTTAAGGCGGCACTTGAGG 1941984 30 100.0 37 GCACTTGAGG .............................. CGCGCCATGAAGCGTCAGGAAGACGCTATCGTGTATC 1942051 30 100.0 36 ATCGTGTATC .............................. CGGGCACGGCGGACGACTTCGCAGGAGGGGCCTTCG 1942117 30 100.0 37 GGGGCCTTCG .............................. AGCAAGGCTCCCATCTTCTCATCCATAACGGCGTGCA 1942184 30 100.0 38 ACGGCGTGCA .............................. AGGCGAACCTCGATACCCTGCGGATGCTCGACCCGTCC 1942252 30 100.0 36 CGACCCGTCC .............................. TCCGAACTCGTGACCGCCGATCAGCTCGGAGACGGC 1942318 30 100.0 36 CGGAGACGGC .............................. CGATGTAGAGCGTCGTCGGCCCAGCTCGTGGCGGGG 1942384 30 100.0 36 CGTGGCGGGG .............................. TCAGAAGATCTACTCTGCCAGGGCGTGTAAACACAG 1942450 30 100.0 36 GTAAACACAG .............................. CGGTAGGTGTAGCGGCCCTCGATGCCGCAGGGCTCG 1942516 30 100.0 35 GCAGGGCTCG .............................. CCGAGACACTCAAAAGGAGTACGGAGGAAATCCTG 1942581 30 100.0 37 GGAAATCCTG .............................. ATCCCGTACTGCTTCGCCAAGCGAATGCATGTTTCAA 1942648 30 100.0 36 CATGTTTCAA .............................. CAGCAGTGAAGTACAAACTGACGGGGCGCGGGCAGG 1942714 30 100.0 39 CGCGGGCAGG .............................. CGGCATAGGGGCCGTGATGCAGAGGTCCGGGATGGGGCC 1942783 30 100.0 36 GGATGGGGCC .............................. TATGTGTGGATTGCTGGGCCACAGGGGAAGCGATAG 1942849 30 100.0 35 GAAGCGATAG .............................. AGTGCCTTGAGATACGATTCGCTGACATTCCGCCA 1942914 30 100.0 35 CATTCCGCCA .............................. AGCCATTGTACTGGCCACTGCCGGCCATACTTCTC 1942979 30 100.0 35 CATACTTCTC .............................. TAAAAACCCAGAGCCGCCTTCATTTCCTCATCCTG 1943044 30 100.0 36 CCTCATCCTG .............................. GCACTCAATACGCCCACGCCGAACATGACGGCAGCC 1943110 30 100.0 35 GACGGCAGCC .............................. TATGCATTCCATCGTTCACTGTCGCCATTTATCTC 1943175 30 100.0 37 CATTTATCTC .............................. TTCCTCACCCAGAACCTGAAAGAACTCTCAGCGAACA 1943242 30 100.0 37 TCAGCGAACA .............................. AGAAGGAGTGTCATTTCAAGATGAAACTGTACTGTTC 1943309 30 100.0 37 TGTACTGTTC .............................. CTCAGCTAGTCATCGTGCCCTGCTTCTTCCCTACGCC 1943376 30 100.0 35 TCCCTACGCC .............................. TACGAAGGTCGCGTAATACTCGATGGGGAACGGGC 1943441 30 100.0 37 GGGAACGGGC .............................. ACCATGCAGACTTCCTCCTCAGCAGTGACAAAGCGGT 1943508 30 100.0 37 ACAAAGCGGT .............................. CGACCTGCGCGTCCTGAACAAGCTGTTCCACACGGAC 1943575 30 100.0 35 CCACACGGAC .............................. CCATCCCTTCATTCATGGAAATGACGCCTTGGCAA 1943640 30 100.0 35 GCCTTGGCAA .............................. ATTCGGCTCAGGAGTGGATGAACGAGCGCATCCCG 1943705 30 100.0 36 GCGCATCCCG .............................. TCATTCCGACCTGCGCCCTTCCCTTGAGTTCTTTCA 1943771 30 100.0 36 AGTTCTTTCA .............................. AAAGAACTCTCAGCGAACATGACGCCGAGGACCAGC 1943837 30 100.0 36 GAGGACCAGC .............................. GGTTTATGCAGGAAGTGGATATCGAATGGCGGAGGG 1943903 30 100.0 37 TGGCGGAGGG .............................. AGCGTGATCTTCCCGGTCGTAGCATCGACCGTATCCA 1943970 30 100.0 38 ACCGTATCCA .............................. CTTTCGCAGTTCCTCGTGTGTCATGCCATTTCCTCACC 1944038 30 100.0 38 TTTCCTCACC .............................. CGATGATGACGGGCATTCACAGGACTTCTGGCTGTATG 1944106 30 100.0 38 TGGCTGTATG .............................. TCCAGGTCCCACCTCCGCCGGTCGGCGGTCCGGAATAC 1944174 30 100.0 36 TCCGGAATAC .............................. ACGAGGGGCAGCTCAATGTGCAGGGTCTGCATCTTG 1944240 30 100.0 37 CTGCATCTTG .............................. TAGTCCAGCCCTTCCGGCCCCATGATGGACTCCACCC 1944307 30 100.0 35 GACTCCACCC .............................. CACCATCAGGGGAGGTCGCCGCCTTGTTGCCGCTT 1944372 30 100.0 37 GTTGCCGCTT .............................. TCTCCCACAGCGCAGAATACCCCCTGTTCCGGCGACC 1944439 30 100.0 36 TCCGGCGACC .............................. CTGTAAACCTCAAGCCGCTCGATACGTTGCCCCCGG 1944505 30 100.0 36 TTGCCCCCGG .............................. GATAGGAGTGGCGAATCCGCCAAATCAAAATTCAGA 1944571 30 100.0 37 AAAATTCAGA .............................. GCTGTTCACGGGGGCATGTTTACAACGTTGAAAGCGG 1944638 30 100.0 36 TTGAAAGCGG .............................. TGCCATGCGGCGGCAACTCATCTATCGGGCCTTTGA 1944704 30 100.0 38 GGGCCTTTGA .............................. TACTCCCCAAGCCTGTAACCCCAAGCCTCAAGGCTGTG 1944772 30 100.0 36 CAAGGCTGTG .............................. CCTCGTCCTTCCCAAAAGGAACGCGAAGTGTCCTCG 1944838 30 100.0 37 AGTGTCCTCG .............................. GAAATCGTCGTTTTCTTCATCCGTCGTTTGCTCCTTC 1944905 30 100.0 36 TTGCTCCTTC .............................. AATCGGCGGCCGAGGAGTACGTCGTTATCGACGACC 1944971 30 100.0 36 ATCGACGACC .............................. AGGTTTTAGGGCTTAAAGGTGCGTCCGAAGGGCTCG 1945037 30 100.0 37 GAAGGGCTCG .............................. ACAACCAGGACGCCGGGATGTACAGGACCTTCATCAA 1945104 30 100.0 36 CCTTCATCAA .............................. GGGTTCGACCCGCTTCCGGAGGGCGAGTACACGGTG 1945170 30 100.0 37 GTACACGGTG .............................. GTCTCCATCGAGCAAATACAACGCAACACCGGCTGCC 1945237 30 100.0 35 ACCGGCTGCC .............................. TGTTGGGTTGATACCATTGTGGGGTAGAGCGGGCC 1945302 30 100.0 35 AGAGCGGGCC .............................. AAGTGGTGGATGACGACCCCAATAATCCCTTCCCC 1945367 30 100.0 37 TCCCTTCCCC .............................. CGTGCGACAGGACGATGATGCGGCGGTCTTCGTGCCC 1945434 30 100.0 37 CTTCGTGCCC .............................. ACCAATCCCAGCACGTCACATACGTCTTTCGCCACCC 1945501 30 100.0 37 TTCGCCACCC .............................. ACGTCCAGCCGGACGTCCGTGAACTTGGAGCGCAGCG 1945568 30 100.0 36 GAGCGCAGCG .............................. CCGCTCCCGGTGGGCGCCACGATGCAGAGGTCCCCC 1945634 30 100.0 GAGGTCCCCC .............................. CNNNNNNNNN ========== ====== ====== ====== ========== ============================== 84 30 36 CTTCCTAAACTTCCTTAGAGGGATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.40,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [53.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1428,662] Score: 0.18/0.18 # # Final direction: F [0.82,0 Confidence: HIGH] >NC_021038 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1946324 30 100.0 36 ATCGCCGCCG .............................. TCGAAGAAATAAGTGCTGAAACTAGGACGAGGGCTC 1946390 30 100.0 36 ACGAGGGCTC .............................. GCAGGCGAAGGACCGAAGCGGGCGCCTGGACACGTG 1946456 30 100.0 37 TGGACACGTG .............................. CAGGACCAGCTCCGGCCTGACCGTCATCGTCTCCGAG 1946523 30 100.0 37 CGTCTCCGAG .............................. CCCGATAGCCTATTGGCGCAAGGAAGACGTCATGGAC 1946590 30 100.0 37 CGTCATGGAC .............................. AAGAAGAACTCAGCCTGTTCCTCCGGTTTGTAGTCCA 1946657 30 100.0 37 TTGTAGTCCA .............................. AAGAAGAACTCAGCCTGTTCCTCCGGTTTGTAGTCCA 1946724 30 100.0 38 TTGTAGTCCA .............................. CGGAGATAGAAAGGGAGGTGAACACATGAGCCATACGC 1946792 30 100.0 38 AGCCATACGC .............................. ATGAGTGTTTCATCTACAACAGCCCGCCACTGGTTCGA 1946860 30 100.0 37 ACTGGTTCGA .............................. GTAAACCACGGTGGCGTTATAGCATCTTGCAAACCAT 1946927 30 100.0 35 TGCAAACCAT .............................. AGTGAAGCGGGTGCGCACTGAAGGTGCTTAGTGTT 1946992 30 100.0 38 GCTTAGTGTT .............................. GCCGATGCTTCCAAGGTATTCGGAGAGCGCGCAGCCAA 1947060 30 100.0 36 GCGCAGCCAA .............................. CGATATCAAGAGCAAGACGGTCTGGCGCGGGGACCA 1947126 30 100.0 35 GCGGGGACCA .............................. AGGTTTCCTCGTCATATCTTCTGGGCGAAACTGAC 1947191 30 100.0 37 CGAAACTGAC .............................. TTTCTTTGGAGGAGACGGGGTATAATGACCCCGCCTC 1947258 30 100.0 33 ACCCCGCCTC .............................. AAAAATCCGAAGGGGTTGGGGTTATGAGCGAAG 1947321 30 100.0 36 ATGAGCGAAG .............................. CTGGTCGAGATAGTCCCAGTCCTCGACAGGTTTCCC 1947387 30 100.0 37 CAGGTTTCCC .............................. GAGAGCTCCAGCACGTCGCACACGTCCTTCGCCACCC 1947454 30 100.0 38 TTCGCCACCC .............................. CAAGTGCTGCTGAAGGTTCTGGATTCGAGATCGGCGAC 1947522 30 100.0 38 GATCGGCGAC .............................. AGCTGCCTCTTGTCAGCGAAGCCTGCATGTACGGCGGG 1947590 30 100.0 36 GTACGGCGGG .............................. TGGTCTCCCGCGGGGATCAGTCTGGCTTGGCTCTCC 1947656 30 100.0 36 TTGGCTCTCC .............................. GACTGGCTTGACGAGGAATCCTACAGAAACGGGGGC 1947722 30 100.0 37 AAACGGGGGC .............................. CGGTCCCGGACCTCCTCTCTCCGTCCGTCCAGCTCAC 1947789 30 100.0 36 TCCAGCTCAC .............................. TGGTCTCCCGCGGGGATCAGTCTGGCTTGGCTCTCC 1947855 30 100.0 36 TTGGCTCTCC .............................. GACTGGCTTGACGAGGAATCCTACAGAAACGGGGGC 1947921 30 100.0 AAACGGGGGC .............................. ACAGAACAC ========== ====== ====== ====== ========== ============================== 25 30 36 CTTCCTAAACTTCCTTAGAGGGATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.40,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [13.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [660,172] Score: 0.18/0.18 # # Final direction: F [0.55,0.27 Confidence: MEDIUM] >NC_021038 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1948121 30 100.0 37 TATCACGGCA .............................. GTCTCATCAGGCACCGCCTCACGGTGCGACGCCCCCG 1948188 30 100.0 36 GACGCCCCCG .............................. CTACGACGGCGGGACCGCATCTATCCGGCAGATCGG 1948254 30 100.0 36 GGCAGATCGG .............................. TTCTTTCGGAGGAGACGGGGTATAATGACCCCGCCT 1948320 30 100.0 37 GACCCCGCCT .............................. AGCTGACACAAGAGCATATTTCGGGCAAGGGGTTCTC 1948387 30 100.0 37 AGGGGTTCTC .............................. TCGGCTGGTCGAGGAAGCTCAGAATATTTTGTGCCGC 1948454 30 100.0 37 TTTGTGCCGC .............................. CCCATACTCCCCCTGTGGCCCCGTAACCACAGGAGGA 1948521 30 100.0 35 CACAGGAGGA .............................. CACCAACACGCCCTCCAGCACGATCTGACGCAGGG 1948586 30 100.0 36 TGACGCAGGG .............................. GTACAAACCGCTTTTCCATCTCAATTCCCTCCTATG 1948652 30 100.0 36 CCCTCCTATG .............................. AAACATCTGGTAGGCTCTATCTCTCTTGTCCCTTCA 1948718 30 96.7 37 TGTCCCTTCA .............................A CGTGCAGCTCCTGCGGGAGGAGTTCGGGATTTCGGTC 1948785 30 100.0 36 GATTTCGGTC .............................. GGTAAACAATTCAAAACAGCAACAACATGGGGATGG 1948851 30 100.0 37 ATGGGGATGG .............................. AGCTTCGTCCACGAGCCATTCCACAAACTGCGCGAGC 1948918 30 100.0 36 CTGCGCGAGC .............................. TCTGATCCCCGCGTCCGTGGCTGGAGTAGCCTCTGG 1948984 30 100.0 37 TAGCCTCTGG .............................. ACAAGTAGGGGCCCTTTCGGTGAAGATTCCGAAGGGC 1949051 30 100.0 35 TCCGAAGGGC .............................. CACGACTGGACGGAGCATAACGATTGGGCATCAAA 1949116 30 100.0 36 GGGCATCAAA .............................. TCAATATGACCATACTTGAGCATGCTCAAGCATGGT 1949182 30 100.0 35 CAAGCATGGT .............................. ACCCACAGTCTTCCCGGACGGCGGACGTTTCTCGA 1949247 30 100.0 38 CGTTTCTCGA .............................. TCGGGCGCTGTTCCTGCCGTCCCTGTTGGGAAGCGGGG 1949315 30 100.0 35 GGAAGCGGGG .............................. TGGTGCGCATCACGCGCCCAGGGCTGGAGATCATC 1949380 30 100.0 37 GGAGATCATC .............................. TCGGCGTGCGCCACGCTCATGTGTAGCAGGGGGACGT 1949447 30 100.0 37 AGGGGGACGT .............................. CTCGTACGTGAGGTCCGGCCGAACGACCGGCGCCGAT 1949514 30 100.0 35 CGGCGCCGAT .............................. AATAAAAATAACAACCCAATTTCAACATTTAATTG 1949579 30 100.0 37 CATTTAATTG .............................. CATTGAAGCGTGAGGCGCTCCCTGTGAAGTGGTCCCA 1949646 30 100.0 37 AGTGGTCCCA .............................. ACTGAGGCTGCCGTCGTGTTCAGCATGAGCGTATTGG 1949713 30 100.0 35 AGCGTATTGG .............................. GTGTTTCCGACGACGTATTTCCAGATGGAAATACC 1949778 30 100.0 37 TGGAAATACC .............................. CGTGAGCTCCCTGCCGCCTAAGACCCGGTATGAAGCC 1949845 30 100.0 37 GTATGAAGCC .............................. CGTCCTCACCGGGGCTCCGGGGACCATGAAGACGAGC 1949912 30 100.0 37 GAAGACGAGC .............................. GCTCTACTGATAGCTAAATCCTTGGTACTGCTGGACT 1949979 30 100.0 36 CTGCTGGACT .............................. TATCCAGGGACACACGCCATCGTCCTGACAATCAGC 1950045 30 100.0 37 GACAATCAGC .............................. GGGCTCAACCCCACCCGGAAGTACGAGCAGGACGAGG 1950112 30 100.0 38 CAGGACGAGG .............................. CGCATCGTCAACAGACGCGAAAATCTACGAACGAACGG 1950180 30 100.0 36 GAACGAACGG .............................. GTATAGCGCGTTTTCGTCGGCGATAAAGGAGGTCAC 1950246 30 100.0 35 AGGAGGTCAC .............................. TGTGGGTTCTGGTGTTTCAGGAAATTGGGAATCCA 1950311 30 100.0 37 TGGGAATCCA .............................. CCGGTGAGGGCGAAAGACGGTCCTGCGTGGCCTGGAC 1950378 30 100.0 35 TGGCCTGGAC .............................. TCCAAGTCCGGGCGTCCGGTGGGCCGGATGATTCC 1950443 30 100.0 35 GGATGATTCC .............................. CAGAAGCAAGGAACGCGTTGCCGGCGGGAGAGGAA 1950508 30 100.0 37 GGGAGAGGAA .............................. TGATAATCTCCCCAAACAACACCCATTTTCTTACCAC 1950575 30 100.0 36 TTCTTACCAC .............................. CCGTGAGGTACTACGAGCGCAGGGGCTTTCGCCCCG 1950641 30 100.0 37 TTTCGCCCCG .............................. ATGTTCAAGGCAGAGAAGTTGACCGAAGGCAAGCATA 1950708 30 100.0 36 GGCAAGCATA .............................. AATATTTCATTACTGCCACCCTTTGCGACGGGGATA 1950774 30 100.0 38 GACGGGGATA .............................. ACAGTTTCTTGAAAACCATTAACAGGAGTACCATATAT 1950842 30 100.0 37 TACCATATAT .............................. TCTGGTTCATCTTGTAATGGTAAATAGGAAATATTAG 1950909 30 100.0 35 GAAATATTAG .............................. TGAAAGGTGAGAATTGTGTGGGGAAAATTGTCACA 1950974 30 100.0 37 AATTGTCACA .............................. AAAAGGAAAATTTAAAAAACAAATTGAAGATTGGGCA 1951041 30 100.0 36 AGATTGGGCA .............................. AATGGACTGGAAATTATCCTTGTCTTTGTTATGGTA 1951107 30 100.0 37 TGTTATGGTA .............................. CTCCTTTCATCAGGCCAGTGCCCATCTCCAAGTAACC 1951174 30 100.0 38 CCAAGTAACC .............................. CGGGGACGCAGAGCGGGGCGAACCTGCAGCTGAGCGCG 1951242 30 100.0 37 GCTGAGCGCG .............................. GGTCGTAGACCTCATTGTGTCGGATGCCCGTCTCGCC 1951309 30 100.0 37 CCGTCTCGCC .............................. CCACAGGCCGGACGTACCGGTTCAATCCAAAAAATCA 1951376 30 100.0 36 CAAAAAATCA .............................. ATGAGTGTTTCATCTACAACAGCCCGCCACTGATTC 1951442 30 96.7 35 CCACTGATTC ..................G........... CAGCTCCCGCAAGTACTCGCCCATGCTTTGCCCCG 1951507 30 100.0 39 CTTTGCCCCG .............................. AGCACGCCTTTTCGGAGAATAAAATCGAGGTGGGAAATG 1951576 30 100.0 37 GTGGGAAATG .............................. TCGACGGGCTCGTGCACGACGTGAAGCCCGCGACCCT 1951643 30 100.0 37 CCGCGACCCT .............................. TCGTCCGAGAGACGGAACGAAAGGTGGTGACGGTACG 1951710 30 100.0 36 TGACGGTACG .............................. TGTGGCCAGCGGCACGATGTGCGGGCGGCGCATCTT 1951776 30 100.0 38 GGCGCATCTT .............................. CGGCTGTGATGAGGATTCAGTACAACGATGGTTCCAGC 1951844 30 100.0 35 TGGTTCCAGC .............................. GGCTCACGAGCCAACAGGGCCAGTATTCCATCATG 1951909 30 100.0 38 TTCCATCATG .............................. CGTCGCCCCCGAAAAATCCTTCCTCCAGCCGCGATTTC 1951977 30 100.0 36 CCGCGATTTC .............................. CAGAAGTTGTCCATTCTTCTTTACCGCGCTGATAGT 1952043 30 100.0 35 CGCTGATAGT .............................. ATGCGGTTCTGCGCGCCGTACTGATCGTTCCCCTC 1952108 30 100.0 36 CGTTCCCCTC .............................. CTCAAGGTCCGTACTTTGTTGGCGGAACAGACGAAG 1952174 30 100.0 36 ACAGACGAAG .............................. TAGAAGTACTCCGGAGCGCACAGGTCGTCCTCGATG 1952240 30 100.0 GTCCTCGATG .............................. GTACGACTGA ========== ====== ====== ====== ========== ============================== 63 30 36 CTTCCTAAACTTCCTTAGAGGGATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.40,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [48.3-50.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [170,2824] Score: 0.18/0.18 # # Final direction: F [0.37,0.18 Confidence: MEDIUM] >NC_021038 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 2091101 36 100.0 34 CACTAGTTGC .................................... CTCTAAATGAAATAAGATTTACTCCTCTATCGAC 2091171 36 97.2 35 CTCTATCGAC ..............................A..... ATCTTCCTACAAAACATCGTAGGAAGCGCCCAGAT 2091242 36 97.2 34 GCGCCCAGAT ..............................A..... ACATTACCAGCGCGAAGGCGACCGACCAGACCGT 2091312 36 97.2 35 ACCAGACCGT ..............................A..... GCAATAAGTACGGTATTGCTGCGGTGATGTTCCCT 2091383 36 97.2 35 GATGTTCCCT ..............................A..... GCAATAAGTACGGTATTGCTGCGGTGATGTTCCCT 2091454 36 97.2 34 GATGTTCCCT ..............................A..... AGAATCAGGAAATGATTACGTGGAAAGAGCTTGG 2091524 36 100.0 33 AAGAGCTTGG .................................... GGAGGAAGATCGTAATGACCCAGCAGTCGGGGT 2091593 36 100.0 33 CAGTCGGGGT .................................... AAAGGTACAACAGGAAGAGAGAAGTATACCTTC 2091662 36 100.0 33 GTATACCTTC .................................... CGAGAAGATCTTTTGGGGTAGACTTTCTCCTGA 2091731 36 100.0 33 TTTCTCCTGA .................................... GTGAAGAGGATGATGAAGTTTAGTTTTCAACAG 2091800 36 100.0 33 TTTTCAACAG .................................... CCATCATCGGGTGCCGCTCTCTTGGCGAATAGC 2091869 36 100.0 35 GGCGAATAGC .................................... ATTTTATGACTATCCTAAGAAAAAGGGAGAGCGGG 2091940 36 100.0 33 GGAGAGCGGG .................................... CGATTGATGGAGATGTGCAAGAAGATATAGTTT 2092009 36 100.0 34 GATATAGTTT .................................... AAGTTGAACGAGGTACGTGACGATTCTGAAAAGG 2092079 36 100.0 33 TCTGAAAAGG .................................... ACGCCTACTGGAGATAGGCCGAAACAACTATCT 2092148 36 100.0 34 ACAACTATCT .................................... AACGGAGGAAACCTCCCCCTCGGATTCCGAGGGG 2092218 36 100.0 33 TTCCGAGGGG .................................... GCAAAATTCTCTACTGCCAGTCCCTGGGGCAGT 2092287 36 100.0 34 CTGGGGCAGT .................................... AGTATGGGGCCGATCTCCTTGTCCCGGCGGAGGT 2092357 36 100.0 33 CGGCGGAGGT .................................... GCGGCTGCCCGGGTTATGAATAATAACCCGGGA 2092426 36 100.0 33 TAACCCGGGA .................................... AAGGACCACGGTGCCGGCGACACCGGCACCAAG 2092495 36 100.0 32 CGGCACCAAG .................................... GGGCGTGGCAATGAAGTCACGCTCAAGCCCGT 2092563 36 100.0 31 TCAAGCCCGT .................................... GTGGGCGCGCTTCTTGTGAAGAAGTTGATGG 2092630 36 100.0 36 AAGTTGATGG .................................... GGCCTCGTCAATTACAAGTTGAATGAGGTACGTGAC 2092702 36 100.0 33 GGTACGTGAC .................................... ATGTTAACGGAAGAGCTCTTACTTCCATAAACA 2092771 36 100.0 34 TCCATAAACA .................................... GCCATGCAGGAAGTACGAAGCTTTTGGCCTCCTG 2092841 36 100.0 35 TGGCCTCCTG .................................... AGCAATGAGCGTCATTAACATGACGCCCCATCCGA 2092912 36 100.0 33 CCCCATCCGA .................................... TCAGCTCGTGAAGAGCGCCTGCCCGAATAGGGA 2092981 36 100.0 34 CGAATAGGGA .................................... TGGGAGTATTACTGGACTAATCTCGGACCTAGCC 2093051 36 100.0 34 GGACCTAGCC .................................... ATGAACCGGCGTGGCGCCTTTATCCGCGTCACAG 2093121 36 100.0 36 CGCGTCACAG .................................... GGGTATCGTCTGGGAATTTGCTGGCGATACCCTACT 2093193 36 100.0 34 ATACCCTACT .................................... TTTTCGATCGGCTCTCCCTCAGAATCCACGAAGA 2093263 36 100.0 35 TCCACGAAGA .................................... TTTTTGAAGAAGATCGTCCCTATCAGGACAGGCAG 2093334 36 100.0 33 GGACAGGCAG .................................... ATTTTACTCAAGAGGCATCAGCGTCTTCATCTT 2093403 36 100.0 34 TCTTCATCTT .................................... TTTACTTTATTGAAAACGAAACTTCACCGTGCTA 2093473 36 100.0 33 CACCGTGCTA .................................... TTTTGATCATACGAGTGCTACTGGACGGGTTGA 2093542 36 100.0 34 GACGGGTTGA .................................... GGCTCTTAGGATCTACTATGAGCCACAGTCAAAG 2093612 36 100.0 32 ACAGTCAAAG .................................... CTCATCAAACTCATCGAGTGGTTCAGTGGATC 2093680 36 100.0 33 TCAGTGGATC .................................... GGGCCTAATCCCGAAAGATCAGGTCGAGGAATT 2093749 36 100.0 34 TCGAGGAATT .................................... GTAACAGTTGGAGGCAGTAACTGAATCTAGCGAT 2093819 36 100.0 33 ATCTAGCGAT .................................... CTCTCGAGCAGGCCCAAGAGGCCTTTCACTACT 2093888 36 100.0 33 TTTCACTACT .................................... AACGGGGGAAGGATCATATAGCTGGTTGATTGT 2093957 36 100.0 35 GGTTGATTGT .................................... AAGTTGCCTGCAGGCGATTAATTACTATGGAATTC 2094028 36 100.0 34 TATGGAATTC .................................... TACTATTAAGATGATACTCCATAGCCATTTTAGC 2094098 36 100.0 33 CCATTTTAGC .................................... ATACCCAGTTCTTCCAACCGGAAAGCTGGGTAA 2094167 36 100.0 35 AGCTGGGTAA .................................... CATTTCGCGAATGGACGAGGAGGCCGGTCAGTATG 2094238 36 100.0 35 GGTCAGTATG .................................... CTGCCAGTGGGATGGTGTGCCGTTTGACCACCCGG 2094309 36 100.0 GACCACCCGG .................................... TGTATCACGA ========== ====== ====== ====== ========== ==================================== 47 36 33 GTTTCAATCCCCTTCCGAGGTTTCCGACGTGCTGAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [5,11] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.80,-5.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [121,467] Score: 0.18/0.18 # # Final direction: R [0,5.69 Confidence: HIGH] >NC_021038 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1955092 30 100.0 37 CTCCTCCAAA .............................. GAGGAGAGGGATAAGGTAATCGGGCAGAAGGTAAAGA 1955159 30 100.0 35 AAGGTAAAGA .............................. AATCGAGCCAATGAAAACATCACCGGAAAATCTTG 1955224 30 100.0 37 GAAAATCTTG .............................. CCTCCTGTGCCGTTCGGTGTGTCATAGAACCCATCCA 1955291 30 100.0 37 AACCCATCCA .............................. TAGCGCGGCAGATTATGCCGCTATGGGAACGCTGTGC 1955358 30 100.0 37 AACGCTGTGC .............................. ACGGGACGGTACCCAGCCCACGACCGCATCAGCTCCA 1955425 30 100.0 39 ATCAGCTCCA .............................. TGTTTCGCGGCGGGGGGTGGCGCCCGGACCGTCGGGGTC 1955494 30 100.0 37 CGTCGGGGTC .............................. CGATATCAAGAGCAAGACGGTCTGGCGCGGGGACCAG 1955561 30 100.0 CGGGGACCAG .............................. ATGCGCTGCC ========== ====== ====== ====== ========== ============================== 8 30 37 CTTCCTAAACTTCCTTAGAGGGATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:56.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.40,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [2822,2120] Score: 0/0.18 # # Final direction: F [0.37,0 Confidence: MEDIUM] >NC_021039 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1892791 32 100.0 35 NNNNNNNNNN ................................ TTTGAAAATTTTCATTTATAATACAAGTAGAAAAT 1892858 32 100.0 34 NNNNNNNNNN ................................ CTGTACAATGCCAACTGCAACCGAGGAAGCCAAG 1892924 32 100.0 34 NNNNNNNNNN ................................ GATATAATGCCGGAATTATTCCAGATGTCTCCCT 1892990 32 100.0 34 NNNNNNNNNN ................................ TTTGAAAATTTTCATTTATAATACAAGTAGAAAA 1893056 32 100.0 33 NNNNNNNNNN ................................ GTAGTATCTGGAAATTGCGCCGGATGGTTGGGC 1893121 32 100.0 33 NNNNNNNNNN ................................ TACAATTATTTACTCGCTCGCGCTGTGCCTTCG 1893186 32 100.0 33 NNNNNNNNNN ................................ CCTCCGCCCCGTCTGCAGGGCGGTATTGATAGA 1893251 32 100.0 34 NNNNNNNNNN ................................ CATCATTGGGAGTATTACCAGTAAACGGCGTTTG 1893317 32 100.0 33 NNNNNNNNNN ................................ GTTTTCCTCTCTGATAATATTTGTAACCGCCAT 1893382 32 100.0 34 NNNNNNNNNN ................................ TTGAAAACATGGAGGCAACATATGTAATGGTTTT 1893448 32 100.0 35 NNNNNNNNNN ................................ TATCGTGTTCCATGTCTGTTAAAGCGAATCCGAAG 1893515 32 100.0 34 NNNNNNNNNN ................................ TGATAGAAAAAGGAACTGCTACAACTATTCAAAA 1893581 32 100.0 36 NNNNNNNNNN ................................ TGGCCTATCGAACAGAAGCAAATTTGATTGCTGAAA 1893649 32 100.0 37 NNNNNNNNNN ................................ TCTTCCTCATAAATTCCATATACGTGAAATTCAGTCC 1893718 32 100.0 34 NNNNNNNNNN ................................ TTCCGGTGGTGCTGGATGGATGGCTACCAGAAAT 1893784 32 100.0 38 NNNNNNNNNN ................................ AATTCATGTAGGGGACTACATAATCGAAGACGGAAAAA 1893854 32 100.0 34 NNNNNNNNNN ................................ TTTTCTTTTGAATGCTGTTTCCGTATTTGTTGTT 1893920 32 100.0 35 NNNNNNNNNN ................................ TCTTGCAAGAAAAAATTTAATGAATATATGAAAGC 1893987 32 100.0 34 NNNNNNNNNN ................................ GACTAAAAAAGACAATGGCTAAACCAAAAAAGAA 1894053 32 100.0 34 NNNNNNNNNN ................................ TCTGAAGATAGTGCTGATAGCACACGTTCTGTTC 1894119 32 100.0 37 NNNNNNNNNN ................................ TTAGTCTTCCAGTTGTAGTAAGTCTTACCCTGCCAAT 1894188 32 100.0 34 NNNNNNNNNN ................................ GTTTTTTCGCCTCGTCTCCTCCCACGTCCGTGCT 1894254 32 100.0 35 NNNNNNNNNN ................................ CCATTATTCGTCTTTTACGCACCAATAGCCATTCG 1894321 32 100.0 32 NNNNNNNNNN ................................ TTAAATGTTTGAGAATTGGAAAGAAAGAAAGT 1894385 32 100.0 34 NNNNNNNNNN ................................ TCAAATATTCTTCTTCTTTCCCGACTACGCCTTT 1894451 32 100.0 33 NNNNNNNNNN ................................ AATGACATATGGGAACATATAGAAGAAAAGGGT 1894516 32 100.0 37 NNNNNNNNNN ................................ TTGCGCCGGGGGCACCAGCTCCAGCAGCTGTTTGATG 1894585 32 100.0 34 NNNNNNNNNN ................................ CCAGTATTTGGAGTGCCTGCGTCCGCAGTTTAAA 1894651 32 100.0 36 NNNNNNNNNN ................................ CCGCCGCCTGCAATCAGGGCGGTGATAGCCATTCCA 1894719 32 100.0 35 NNNNNNNNNN ................................ CACCGCCTGGTCAGTGTCGCCCAACACGCCCTGCA 1894786 32 100.0 34 NNNNNNNNNN ................................ TTGTCCTATTCAGAACCCCAAAATAGCGTTAAGA 1894852 32 100.0 34 NNNNNNNNNN ................................ GATGGCAGAACCAACCATGAAAAGAACCTGCCGG 1894918 32 100.0 33 NNNNNNNNNN ................................ GAAAGTTCCCACGTCAAGAATTGTATCCTTAAT 1894983 32 100.0 33 NNNNNNNNNN ................................ TAGTCACATCAGAGCCAACAGAACCCATCTTAA 1895048 32 100.0 35 NNNNNNNNNN ................................ GGATTATTCCAAAATAAGACACTCTGAAACTGAAA 1895115 32 100.0 34 NNNNNNNNNN ................................ GTTTGCGTTCTTTTTCCTCTGTTTCAAAACGTTT 1895181 32 100.0 34 NNNNNNNNNN ................................ TGCCGTTTCGATGGTTGAAGTAACCAACAAGGAA 1895247 32 100.0 35 NNNNNNNNNN ................................ CTCTGATAATGTTTGTTACTGCCATTCCATACAGG 1895314 32 100.0 34 NNNNNNNNNN ................................ TTTGGAAATTGGCGTTTTTCAGTGCTTTGTTGAT 1895380 32 100.0 37 NNNNNNNNNN ................................ TATTTGCAACTGCCATATATACATAATGGATGTTTTC 1895449 32 100.0 34 NNNNNNNNNN ................................ ACCATTCCATAACCATTTACTGCCAACTGCCAAA 1895515 32 100.0 1 NNNNNNNNNN ................................ NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 42 32 34 GTCACGCCCTACACGGGCGTGTGAGTTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [7,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.80,-7.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [53.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [150,343] Score: 0.18/0.18 # # Final direction: R [0.27,0.55 Confidence: MEDIUM] >NC_021039 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1895888 32 100.0 34 NNNNNNNNNN ................................ GAATGTTTACGGGTGAACGCTAAAAGATACACCC 1895954 32 100.0 34 AGATACACCC ................................ GCAGAAAAGCCTCTGAGGAAAAAGCATTCACTAC 1896020 32 100.0 37 CATTCACTAC ................................ CGACCTGATCGGGGAAGATAACCGGGCGCTGGCGCCT 1896089 32 100.0 35 GCTGGCGCCT ................................ TTACGATCCCAAAACCCGCACCATCGTCCACACGA 1896156 32 100.0 36 GTCCACACGA ................................ CTGTCGCTGTGACAGCGCAGATTTCCAAGCAGGCAA 1896224 32 100.0 34 AAGCAGGCAA ................................ CGTCGATCATGTCATCCCGCAGGGCTGACATGGC 1896290 32 96.9 34 CTGACATGGC .....A.......................... GCCAGATAATGGTACTTGGTGACAAAACCAACCA 1896356 32 100.0 34 AAACCAACCA ................................ TAACAGGGCTACCACATCCGCCGAAAATTCCCGA 1896422 32 100.0 33 AAATTCCCGA ................................ ATTGATGAAATCGGCACTCTGTTCAATTCCCGG 1896487 32 100.0 36 CAATTCCCGG ................................ TCACGGGGTTGGGCGGGGAACACCCCGCCCGAGAAG 1896555 32 100.0 36 GCCCGAGAAG ................................ ACAGTTATATAAATTAAGATAATTTGATATGTTCCC 1896623 32 100.0 35 ATATGTTCCC ................................ AAATGCAAAAAAATCTGAAATGGGGCAAGTTGTCA 1896690 32 100.0 34 CAAGTTGTCA ................................ TTGCCCGGTGCCGCACAGGTGCAAACCCGTGCGA 1896756 32 100.0 34 ACCCGTGCGA ................................ ATTCCAGAGGAACACAAGAACGGCGGCATACACG 1896822 32 100.0 35 GGCATACACG ................................ GGAATTTCTGTTTCCTTTGTATCCCATTGAAACAT 1896889 32 100.0 ATTGAAACAT ................................ TTGAACGTCA ========== ====== ====== ====== ========== ================================ 16 32 34 GTCACGCCCTACACGGGCGTGTGAGTTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [7,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.80,-7.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [0.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [407,539] Score: 0/0.18 # # Final direction: R [0,0.64 Confidence: HIGH] >NC_021040 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3537951 36 100.0 29 NNNNNNNNNN .................................... ATAGCGGCCTCGGCCTGATCTATCATATA 3538016 36 100.0 30 NNNNNNNNNN .................................... TTACCGTGAGTCTGGTATCTTGCAGCAAGA 3538082 36 100.0 29 NNNNNNNNNN .................................... AAATAAATGCATACTGAAAACCGTCATTT 3538147 36 100.0 29 NNNNNNNNNN .................................... CTGTAATAGTTTTTCCAAAAAATTTTTTC 3538212 36 100.0 30 NNNNNNNNNN .................................... GGAAAGCAAACCTAATTATGGCTTGTTTAT 3538278 36 100.0 30 NNNNNNNNNN .................................... ATCTAATTTATCAATGGATATCAATGCTGT 3538344 36 100.0 30 NNNNNNNNNN .................................... ACTTGTAGAAAACAAAGATTTTACAGTTTG 3538410 36 100.0 30 NNNNNNNNNN .................................... GCACATTTCAAAAGCCTATGAGTGCGGCGG 3538476 36 100.0 30 NNNNNNNNNN .................................... ATTTAATGGCTAATGGTGTTATGATCGCTA 3538542 36 100.0 30 NNNNNNNNNN .................................... GATCAGCCATTGAAAAATTCAATTCATTGT 3538608 36 100.0 30 NNNNNNNNNN .................................... TATCGTGATGTAATAAACAAAATTGCCATG 3538674 36 100.0 30 NNNNNNNNNN .................................... AAGTGCGACAAACCCCTATCCGTGTTGCTT 3538740 36 100.0 29 NNNNNNNNNN .................................... ACTAGACTTGTTGAGGGTTCAATCTATCA 3538805 36 100.0 30 NNNNNNNNNN .................................... CTTACAACCGTTTATATTTACGGAGATACC 3538871 36 100.0 30 NNNNNNNNNN .................................... CGGATGATGATACAGAAGAAAAATTGATGG 3538937 36 100.0 30 NNNNNNNNNN .................................... TGCATTGTGTCCGGCGTTCATCGTGTCCGG 3539003 36 100.0 30 NNNNNNNNNN .................................... ACACCAGCAGAGTAAGCGGCAAAGTCGAAG 3539069 36 100.0 30 NNNNNNNNNN .................................... ATCATGTTTATACTTAAGAAAATACCGTTT 3539135 36 100.0 29 NNNNNNNNNN .................................... AATCACGGTATCAAGATCACATCCTAGCG 3539200 36 100.0 1 NNNNNNNNNN ......................TGA....AAT..GA NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 20 36 29 ATTATACCATACCAAGTGATAACAGGGAATTACAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.70,-1.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [102,1017] Score: 0.18/0.18 # # Final direction: F [0.78,0.45 Confidence: LOW] >NC_021041 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1221307 28 100.0 35 AAACAACTTT ............................ CCCCAAAAGGCTACATCATAGACAAAAATAGTATC 1221370 28 100.0 37 AAATAGTATC ............................ AGGGGAAAATGGTTATCCTTACCCTTATGTATTACCC 1221435 28 100.0 38 TGTATTACCC ............................ TGCTAAAAAATATTTAAAAGGTTGCAGTGGTGTTACCC 1221501 28 100.0 36 GGTGTTACCC ............................ AATGCTTTAACTAAAGCACTTCTTATGCCCAATATC 1221565 28 100.0 GCCCAATATC ............................ CCTCGTTTTT ========== ====== ====== ====== ========== ============================ 5 28 36 TGTTACTGTTAATCAGTAACAGTTAATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:71.43%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-4.00,-4.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [298,1212] Score: 0.18/0.18 # # Final direction: R [0,0.55 Confidence: HIGH] >NC_021041 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1182236 28 92.9 37 AGATTTTTTA .-..........A............... GGTGGATAAAATGAAAATGAATATGCTTGAGATAAAT 1182301 28 100.0 37 TGAGATAAAT ............................ CTAATACTTTTCCATATTCTAAATAAATACCAAAAAT 1182366 28 100.0 38 TACCAAAAAT ............................ AGAAAAAAGCCGTCAATGGGCTGTTCGCTGTGTTCAAT 1182432 28 100.0 37 TGTGTTCAAT ............................ ATGTTCACACTCTATACTATAAAAACATTATTAAAAT 1182497 28 100.0 TTATTAAAAT ............................ CCTATATTTAT ========== ====== ====== ====== ========== ============================ 5 28 37 TCAAATACAACTCTTGTTTCTATTAATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:75.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [78.3-78.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [777,179] Score: 0.18/0.18 # # Final direction: R [0.18,0.41 Confidence: MEDIUM] >NC_021041 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1917209 30 56.7 36 NNNNNNNNNN NNNNNNNNNNNNN................. TGCTAGTAATTATGCAGGTAGTATGCAAACTGAATT 1917275 30 100.0 35 AAACTGAATT .............................. AAAGGGCTTAAGATTGTGGCTGAATTTAATAATAT 1917340 30 100.0 37 TTAATAATAT .............................. AATGTAGGAAACTTGATAATACTATTCATAAAGTTGA 1917407 30 100.0 36 ATAAAGTTGA .............................. GTAATCAATGAGGGAAATCTTGTATTTTTCCCTAAT 1917473 30 100.0 36 TTTCCCTAAT .............................. ATATAGTAAAATGTCTTATGCTGGCATGGCAATATA 1917539 30 100.0 36 TGGCAATATA .............................. TGTTATAAATGTCGCAAGATAAATTGGAATAATCGT 1917605 30 100.0 36 GAATAATCGT .............................. CTTTTATGAATGTAGCCGAACGTATGGATAATCTTT 1917671 30 100.0 36 GATAATCTTT .............................. ACTTATGGGACTTGCTAAACTTACTTTGCCTAGTTT 1917737 30 100.0 34 TGCCTAGTTT .............................. TTTTATTTCATCTTTAGCCTCATCTATTACTCGT 1917801 30 100.0 36 TATTACTCGT .............................. GCCATAATTGCTTTATATTGTTGCAACTAGAAAATA 1917867 30 100.0 34 CTAGAAAATA .............................. GCCAATGGGCAGATAAGAATAGAATTTTATCTGC 1917931 30 100.0 36 TTTTATCTGC .............................. AAAAATATGCCAATAAAAGGAGAATATAAAAACAAA 1917997 30 100.0 TAAAAACAAA .............................. GCCAGTAAAA ========== ====== ====== ====== ========== ============================== 13 30 35 ATTCAAATACAACACTTGTTAAAGTTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:80.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [0.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [222,1109] Score: 0.18/0.18 # # Final direction: R [0.37,0.86 Confidence: MEDIUM] >NC_021041 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1981379 30 100.0 37 TAGAGAGTGA .............................. TAAGAGCCATAAAATCTGGAACAGCAAAAGCAGTTGC 1981446 30 100.0 37 AAGCAGTTGC .............................. TATAGAAGGGAGCCTGTTTCTTTATGGCTAGTATAAC 1981513 30 100.0 34 CTAGTATAAC .............................. AAATTTGCAGTTAGTTAAAATTTATAAAACAGCA 1981577 30 100.0 35 TAAAACAGCA .............................. TCGTATTAAAGTCTAAATTAAACATATTAAAATAA 1981642 30 100.0 36 ATTAAAATAA .............................. TTCTATACAAAAATCGTTTGTTATGCAGAAATCATT 1981708 30 100.0 AGAAATCATT .............................. GCTAGAAAAA ========== ====== ====== ====== ========== ============================== 6 30 35 ATTCAAATACAACATTTGTTAAAGTTAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:83.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [264,231] Score: 0/0.18 # # Final direction: R [0,0.27 Confidence: MEDIUM] >NC_021041 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 832505 30 100.0 35 TTTTTCTATC .............................. TTTGTTCTTCAATTTTTTAATCTCATCATTTGTCA 832570 30 100.0 36 TCATTTGTCA .............................. GTCTGTTTCTTAGCAAATGCAGAATTAGCAATCTTA 832636 30 100.0 35 AGCAATCTTA .............................. TTTGGCAATAATGACGATAATAGCAATGGTGGTAT 832701 30 100.0 35 ATGGTGGTAT .............................. TTGAATGGAAAGATGAGGAAATAGAAGAAGTACAA 832766 30 100.0 37 AGAAGTACAA .............................. TTATTACAACTGTCTCCCATTCTTATTTTTATTATTA 832833 30 100.0 36 TTTATTATTA .............................. TTTGTAGCATTACCATTAATATTAATATTCCATGTT 832899 30 100.0 36 ATTCCATGTT .............................. CAACTTAACAACAGATCCTTCTTTTAAGAAACTTTT 832965 30 100.0 38 AGAAACTTTT .............................. ATGAAAGTTTTTGAAGGTACAGATTATGGCAGAGGTAT 833033 30 100.0 36 GCAGAGGTAT .............................. TGGCTACTTTGTAACCATTTTGATAAGCATAATCTA 833099 30 100.0 GCATAATCTA .............................. TCTGGACTTAATCTTAGCGTTCTAAAGTCGATGTTT ========== ====== ====== ====== ========== ============================== 10 30 36 ATTTAACTTTAACAAGAGTTGTATTTGAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:80.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.30,-0.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [203,156] Score: 0/0.18 # # Final direction: F [0.37,0 Confidence: MEDIUM] >NC_021041 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 996146 30 100.0 37 TTTTTCTAGC .............................. TATGGTTTTGGGAGCAATATGGGGGCAACCCAAATAA 996213 30 100.0 36 ACCCAAATAA .............................. TGGGTAACTATAAAACCATGGCTATTATTGGCGGTA 996279 30 100.0 36 ATTGGCGGTA .............................. ATGACTCTTTTTAAGCATTGTATACGTGGATTATTT 996345 30 100.0 37 TGGATTATTT .............................. GGTTTTACCATCTGATTTACTCGTCTAACAGATACAC 996412 30 100.0 38 ACAGATACAC .............................. TTTAAAACTTCATCAATACTTTCCTCTTTTACAGATAA 996480 30 100.0 34 TTACAGATAA .............................. ATAATGGTTAGGTGTCAATTTTTAAGCGTTCGGT 996544 30 100.0 37 AGCGTTCGGT .............................. TGCAGGAACAGTCATTCCACCATTTTCCCATTTAGCA 996611 30 100.0 35 CCATTTAGCA .............................. TCTTATATTTACAAAAAGATGATATTTCTATAATA 996676 30 100.0 36 TTCTATAATA .............................. AAAAATATTGTATCGCATCAGCTCCAAAAAGGCAAG 996742 30 100.0 35 AAAAGGCAAG .............................. TTGCTTATAAGGGTGTACCTTTTTTAGTTGACAAA 996807 30 100.0 40 AGTTGACAAA .............................. TGTAGTGAATTAGCACTTGCAGTTGCTGTAGATATAGAAA 996877 30 100.0 37 GATATAGAAA .............................. CCCTCTGTTGCATCAGAGCTGTTTGTGTCGGATTTTT 996944 30 96.7 35 TCGGATTTTT ..........................A... GTAACGGAGAAAGCGATTATGAATACCAATTTTAC 997009 30 96.7 CCAATTTTAC .......A...................... CTTATTATTA ========== ====== ====== ====== ========== ============================== 14 30 36 ATTTAACTTTAACAAGTGTTGTATTTGAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:80.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [76.7-81.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [1512,64] Score: 0.18/0.18 # # Final direction: F [0.59,0.37 Confidence: LOW] >NC_021042 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================= ====== 2155460 33 100.0 34 TGTTTTTGCT ................................. AGACCGCGGGATGCGTGGCAACTGGAAATTTATG 2155527 33 100.0 35 GAAATTTATG ................................. CACGAGGTGATTTCGGAGTGCAGCTGGCAGAGCCA 2155595 33 100.0 35 GGCAGAGCCA ................................. AAAATCGCATTAACCGACGAGAACAACATCATGAG 2155663 33 100.0 35 ACATCATGAG ................................. AAAATCGCATTAACCGACGAGAACAACATCATGAG 2155731 33 100.0 35 ACATCATGAG ................................. TACGCCGCTGGCAAACTGACCGATGAGCACTACGC 2155799 33 100.0 34 AGCACTACGC ................................. TCGTTCAGTTCAGCAGCGGACACAAAGCCACTGT 2155866 33 97.0 33 AAGCCACTGT ............A.................... CATATCAATCAGTTCTCCCAACTTTTGAGCCAC 2155932 33 97.0 TTTGAGCCAC ...A............................. CAGTTTCCAC ========== ====== ====== ====== ========== ================================= 8 33 34 GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [6,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.30,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [185,56] Score: 0.18/0.18 # # Final direction: F [0.86,0.37 Confidence: MEDIUM] >NC_021046 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ========================= ====== 1840054 25 100.0 35 NNNNNNNNNN ......................... CACGGATGATTCAGACGCGCGGCCGCCCGGTAACC 1840114 25 100.0 35 NNNNNNNNNN ......................... CACGCTTCATCAACAAGCTTATGAGCAAAGCCGAT 1840174 25 100.0 35 NNNNNNNNNN ......................... CACTTTGCCCTAACGGCATAGTCGCTGTCGCTGTT 1840234 25 100.0 35 NNNNNNNNNN ......................... CACATGAACCAGCTGGAGGGTCCGCAGGACATTCC 1840294 25 100.0 35 NNNNNNNNNN ......................... CACACACTGGGCACAGAAAGAACAGGTATGCGCAA 1840354 25 100.0 35 NNNNNNNNNN ......................... CACCAAGGGCATCAAGAATCTGACCTACGCCTGAC 1840414 25 100.0 35 NNNNNNNNNN ......................... AACATTCCATGGTTACTCCGTCATTCAAAGCGGAT 1840474 25 100.0 35 NNNNNNNNNN ......................... AACATATCATCTGCGGTTGGCTTCGCGCTGGCTGA 1840534 25 100.0 35 NNNNNNNNNN ......................... AACAGCGACCAGGTGAAGCGTAGGATGGGCTACAA 1840594 25 100.0 1 NNNNNNNNNN ......................... NNNNNNNNNN ========== ====== ====== ====== ========== ========================= 10 25 35 TTTCTAAGCTGCCTGTACGGCAGTG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,8] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 89% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-0.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [173,182] Score: 0/0.18 # # Final direction: R [0,1.51 Confidence: HIGH] >NC_021043 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1598158 28 100.0 33 NNNNNNNNNN ..........T................. TAAGTTTTATAAGCACCCGTTGTCGATTTACGA 1598219 28 100.0 33 NNNNNNNNNN ..........T................. CAACAAAGCAAATGAATCAGAATTTCTGACACG 1598280 28 100.0 33 NNNNNNNNNN ..........T................. CGAGGATTTTTCCTGCGAGGGATGCAAGGAGGT 1598341 28 100.0 33 NNNNNNNNNN ..........T................. TATAAAGCCTCTGAGCTTTGTGTACGAAACTAA 1598402 28 100.0 33 NNNNNNNNNN ..........T................. CTTGGAATTGGCATTTATGTATCTAGGCATCAA 1598463 28 100.0 33 NNNNNNNNNN ..........T................. TTTACTTCTTATTATTGACACATGGACAGATGA 1598524 28 100.0 33 NNNNNNNNNN ............................ CTCGCTTGCTGAGCCGACCTCCGTAAAAGCGGC 1598585 28 100.0 33 NNNNNNNNNN ............................ TTTTATCGGTGACCTTGACACCTCGGCGATACT 1598646 28 100.0 33 NNNNNNNNNN ............................ TACCGAGGATCATAACCGCTCATCGGGTGCTTA 1598707 28 100.0 33 NNNNNNNNNN ............................ TATCTCTCGGTGCGCTTCTTCAAAAATGGGAAA 1598768 28 100.0 33 NNNNNNNNNN ............................ GTCCATGTCAGCCCTGAGGGCGCAAAGTTCGTG 1598829 28 100.0 33 NNNNNNNNNN ............................ TTAGACCATATAAAAAAAGTGTTATACAGACAA 1598890 28 100.0 33 NNNNNNNNNN ............................ TACGCAGATAAACATTGATTTGATGATAATAAA 1598951 28 100.0 33 NNNNNNNNNN ............................ TGTTGGTATCAATAATATTCCTACAGTATATGC 1599012 28 100.0 33 NNNNNNNNNN ............................ CAATTCCAACGGGCTTTATACACTGTGCCGCCT 1599073 28 100.0 33 NNNNNNNNNN ............................ TAATAGCTTGGGTAGTACAAAAGACTATCGATA 1599134 28 100.0 33 NNNNNNNNNN ............................ CAGCTAACTGGCAATAAAAAGCCAACAGAATGG 1599195 28 100.0 33 NNNNNNNNNN ............................ TGGCTTTGTAGTGCGGTTTTACGACCTCTACAA 1599256 28 100.0 33 NNNNNNNNNN ............................ CTTGAAACCGTTCCCTGCGTTTGCGTTGACGAA 1599317 28 100.0 33 NNNNNNNNNN ............................ TATTCTGCCATATATCAATCACCTTGCGAATTA 1599378 28 100.0 33 NNNNNNNNNN ............................ TTCGCACGGGTACTTCCTAGCGGAGAAAAGTCG 1599439 28 100.0 33 NNNNNNNNNN ............................ TAATGACCGAACCTATACCGTGGGCACCGGGAT 1599500 28 100.0 33 NNNNNNNNNN ............................ TATGGACACAGTGCGCAAGGCTCTTAATCACGA 1599561 28 100.0 33 NNNNNNNNNN ............................ TTATAAGCTCATCGACTGTTACGCCGTCAACCA 1599622 28 100.0 33 NNNNNNNNNN ............................ TGAAAAAAGCTATGAATGGCGATGTCAAAGCGT 1599683 28 100.0 33 NNNNNNNNNN ............................ TAGCAGTTGATAAACGATAGCAGAGTTACGTTT 1599744 28 100.0 33 NNNNNNNNNN ........................C... TTATTGTGTTATCGGCACATGAAAATATATCAT 1599805 28 100.0 33 NNNNNNNNNN ............................ TGGGTTGAGAGTCCTATTCATGATCGTGATATT 1599866 28 100.0 33 NNNNNNNNNN ............................ TATCTGCACTTGCGGAAACCGCTTACACAGCTT 1599927 28 100.0 33 NNNNNNNNNN ............................ CTATTTGCGAACACCTAATATTTTTGACATAAA 1599988 28 100.0 33 NNNNNNNNNN ............................ TGAAAAAAGCACCGATTACTCCAGAAGAATACA 1600049 28 100.0 33 NNNNNNNNNN ............................ TCGTCAACTGCTTTGACATCTCGCGTTTGCCGT 1600110 28 100.0 33 NNNNNNNNNN ............................ TACGCTCAAGCAAGTGTTTCAGAAGATCAAGAA 1600171 28 100.0 33 NNNNNNNNNN ............................ CATCCGGAGAATAAGCACATACAGAAATCATAA 1600232 28 100.0 33 NNNNNNNNNN ............................ TATAACACATCTGCTCGAGGGTTACAAGTGCAT 1600293 28 100.0 33 NNNNNNNNNN ............................ TTAACAACTGCGGGGGATAAAAACATCATTGCG 1600354 28 100.0 33 NNNNNNNNNN ............................ TAAACTTAAAGCTGTCGAGGAGGAGTGGAGACG 1600415 28 100.0 33 NNNNNNNNNN ............................ TGCCCAGTATCGACTATAGAGATGTAAAAACCA 1600476 28 100.0 33 NNNNNNNNNN ............................ TGCCCAGTATCGACTATAGAGATGTAAAAACCA 1600537 28 100.0 33 NNNNNNNNNN ............................ CCAGACGGTTAAAAGCGTCAACTGAATACTCGG 1600598 28 100.0 33 NNNNNNNNNN ............................ CCGTGTCAGTAGCAGCAGTTGTCTGAGTGCCTG 1600659 28 100.0 33 NNNNNNNNNN ............................ CTGTGTTTGACGGGCAAACATTTACAGAGGTTT 1600720 28 100.0 33 NNNNNNNNNN ............................ TTTCCGCTTGCTGAGCGTTGATTTCACTATCTT 1600781 28 100.0 33 NNNNNNNNNN ............................ CGCTTGTAGCCGCGCAGATTTAAAAAGTCGTAG 1600842 28 100.0 33 NNNNNNNNNN ............................ CGAAACGGCGGTAGCATATCTTAACGGCAGACT 1600903 28 100.0 33 NNNNNNNNNN ....A....................... CATTTGATTTGCACTCAACAACCGAGCCGTGAA 1600964 28 100.0 33 NNNNNNNNNN ............................ TTATCTGTCCGCGTATCTGTGCCTGTGGCACTT 1601025 28 100.0 33 NNNNNNNNNN ............................ TATAGTGCGGCCCTTTGTCACCAGTTTGAGCTG 1601086 28 100.0 33 NNNNNNNNNN ............................ TAAAAAGCCCCTCACAAGAGGTGCTGTGTTCCA 1601147 28 100.0 1 NNNNNNNNNN ..........................TT NNNNNNNNNN ========== ====== ====== ====== ========== ============================ 50 28 33 CTTGTCCCCACACGCGTGGGGATGATCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-11.10,-11.10] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [46,488] Score: 0.18/0.18 # # Final direction: F [0.68,0.55 Confidence: LOW] >NC_021046 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 1840174 28 96.4 32 CAAAGCCGAT .........................C.. TTTGCCCTAACGGCATAGTCGCTGTCGCTGTT 1840234 28 96.4 32 TGTCGCTGTT .........................C.. ATGAACCAGCTGGAGGGTCCGCAGGACATTCC 1840294 28 96.4 32 AGGACATTCC .........................C.. ACACTGGGCACAGAAAGAACAGGTATGCGCAA 1840354 28 96.4 32 GTATGCGCAA .........................C.. CAAGGGCATCAAGAATCTGACCTACGCCTGAC 1840414 28 100.0 32 TACGCCTGAC ............................ ATTCCATGGTTACTCCGTCATTCAAAGCGGAT 1840474 28 100.0 32 CAAAGCGGAT ............................ ATATCATCTGCGGTTGGCTTCGCGCTGGCTGA 1840534 28 100.0 32 CGCTGGCTGA ............................ AGCGACCAGGTGAAGCGTAGGATGGGCTACAA 1840594 28 100.0 TGGGCTACAA ............................ TGGAAGAA ========== ====== ====== ====== ========== ============================ 8 28 32 TTTCTAAGCTGCCTGTACGGCAGTGAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [6,8] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [51.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [293,179] Score: 0/0.18 # # Final direction: R [0,1.92 Confidence: HIGH] >NC_021043 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 1705732 32 100.0 34 NNNNNNNNNN ................................ TTTTTGGGATTCTTGTAATTAAATATCGTCAGAT 1705798 32 100.0 34 NNNNNNNNNN ................................ GTTGAGCCGGATAGCAAAGATACTAATAAACGCC 1705864 32 100.0 34 NNNNNNNNNN ................................ AAGTTAGCTCAGAAGTTATCGAGCAAGGCAAAGA 1705930 32 100.0 35 NNNNNNNNNN ................................ ATCGGGAAAAGATTTGTCAATTATTGCCATAGAGG 1705997 32 100.0 34 NNNNNNNNNN ................................ ATCCGCAACGCAAATTGCCGATATGATGATAGGC 1706063 32 100.0 34 NNNNNNNNNN ................................ ACAGCACAGCCTCAAACACATGGATAAGGAAAAC 1706129 32 100.0 34 NNNNNNNNNN ................................ CCCATAATATAAGATTTGTTGTTTTACCCCTTGA 1706195 32 100.0 33 NNNNNNNNNN ................................ AACAATTTTGTTGCTTTTTACCCCAATTTTTAA 1706260 32 100.0 35 NNNNNNNNNN ................................ ACAAAGGTACGTTATAATATAGACAATGAAACGAA 1706327 32 100.0 36 NNNNNNNNNN ................................ AAATAAAAATTATGTTTACATACCATTATTTGAAAG 1706395 32 100.0 34 NNNNNNNNNN ................................ TATTCCGTATTCCCTTGCAAGATATGAATCTTCA 1706461 32 100.0 34 NNNNNNNNNN ................................ CACGCAGTTCCAGCGGAAGCGGAAAATTTAAAAG 1706527 32 100.0 34 NNNNNNNNNN ................................ ATCTCCTACACTGTAAATATATCGTTTTGCACCC 1706593 32 100.0 33 NNNNNNNNNN ................................ AGGGCATGGTTAACCTTGCTCTGGCTTGGACGG 1706658 32 100.0 35 NNNNNNNNNN ................................ AAATCAGGTGTACGGCAAAAGAGCAGAAAAGGAAA 1706725 32 100.0 36 NNNNNNNNNN ................................ TGATATTATTCAATGCCTTATTTACAAAGTGGAAAT 1706793 32 100.0 34 NNNNNNNNNN ......T......................... GTCTACAAGCTCGGACGTATCATAAAGATTACGT 1706859 32 100.0 34 NNNNNNNNNN ................................ ACAAAAGCACGTTATAATATAGACAGCCAAGAGG 1706925 32 100.0 35 NNNNNNNNNN ................................ GTCAAAATAAATACTATATTTATCTATTAAATTAC 1706992 32 100.0 34 NNNNNNNNNN ................................ ATTGCGTTACTGGGATATACGAAAATCGGAATAT 1707058 32 100.0 33 NNNNNNNNNN ................................ ATCTGCCACAGACCTCTATTTCCTGTTATACTT 1707123 32 100.0 34 NNNNNNNNNN ................................ TATTGTATCAAGATAAGGAAGTGCCGCTTGCGCG 1707189 32 100.0 35 NNNNNNNNNN ................................ GGGCTTATGTATGAGTTTGCAAAGCTGTCCCCGTC 1707256 32 100.0 33 NNNNNNNNNN ................................ GACGAGTGTCAGCGATTGGGGCTGGAGTGCAGC 1707321 32 100.0 35 NNNNNNNNNN ................................ CTCCGGTATCTTTATAAATAAGCGGATTTGTTACA 1707388 32 100.0 34 NNNNNNNNNN ................................ TTGTTGTCGCCGACTGCCTGCTGGATTGCAGTGT 1707454 32 100.0 35 NNNNNNNNNN ................................ CCGAGCGAGTATGTGCACCTCTGCGTATTAAGGCG 1707521 32 100.0 33 NNNNNNNNNN ................................ GGGAGTTTATCTGCGATATCAACTGCTCACCCC 1707586 32 100.0 33 NNNNNNNNNN ................................ TCAATATATTTGTATTTAGGCATATTTATAACG 1707651 32 100.0 34 NNNNNNNNNN ................................ TGGTTTGCGAATATCCCAGTAACGCAATAATGCT 1707717 32 100.0 34 NNNNNNNNNN ................................ ATAACAAAGTTATAAGATTTTACATCTTTAGGAT 1707783 32 100.0 33 NNNNNNNNNN ................................ AACGCAGTCATCAGTATGGGTAAAACCCAATCC 1707848 32 100.0 34 NNNNNNNNNN ................................ GCATTAATGCCGATTACAACACCCCATATATTTC 1707914 32 100.0 34 NNNNNNNNNN ................................ AACTTGCACCGCACTTGCTTCCGATAGCCGGGAT 1707980 32 100.0 35 NNNNNNNNNN ................................ ATTATATTTATCAAATATAGTATTGCAACCCTTTA 1708047 32 100.0 35 NNNNNNNNNN ................................ ATGTTGTACCTGCTGAAGCAGAAAATTTAAAAGAA 1708114 32 100.0 35 NNNNNNNNNN ................................ GTAAAATTTGGGATACGTTATACGAATAAGCACAG 1708181 32 100.0 35 NNNNNNNNNN ................................ GTCTTCATAAACTATCATTTGTGCATTCCCTTCAT 1708248 32 100.0 34 NNNNNNNNNN ................................ AATGCCGATAGCGTACTTTACGTTTGTACCTACC 1708314 32 100.0 35 NNNNNNNNNN ....................A........... TTCAGTGCTTGACTTGATACGCTGTAACTCACGAT 1708381 32 100.0 34 NNNNNNNNNN ................................ GGTCGTGAAGCACTTTGACAACTCGCTTTCCGTA 1708447 32 100.0 34 NNNNNNNNNN ...............................C GTGAACGATTTAGGCGGTGTCTGCCACGCAGTAG 1708513 32 100.0 35 NNNNNNNNNN ................................ AACATAAGAGATGTATTGATTAATAGCATTAAGTA 1708580 32 100.0 34 NNNNNNNNNN ................................ AATGGAAATCCTGCCATAGAGTGCTTTGATACGC 1708646 32 100.0 35 NNNNNNNNNN ................................ AAGCACCTCGGATATGATATTCTTGTTATTCTGCA 1708713 32 100.0 34 NNNNNNNNNN ...............................C GTCTGGACATGGGTACTATGGCTCTTAAGCTGGC 1708779 32 100.0 1 NNNNNNNNNN .............C.................A NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 47 32 34 GTCGCCCTCTTCATGAGGGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [6,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.20,-4.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [76.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [175,83] Score: 0.18/0.18 # # Final direction: F [5.73,0.37 Confidence: HIGH] >NC_021044 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1272490 29 96.6 40 CTAAGATATT ..C.......................... GTTAGTGAAAGTGAATGAAAGAGGTACAGTAGAGAATTTT 1272559 29 100.0 42 AGAGAATTTT ............................. CATCTTGTTTTAATTACGAAACAAAAAATCCAGATAGAACTT 1272630 29 100.0 39 GATAGAACTT ............................. ATGCAACCGTATAATTATATAATAGCAGTTCCATTAAAT 1272698 29 100.0 36 TCCATTAAAT ............................. TGCCTTTAGAGAAATTAGAAACTTTACGGGATCTTG 1272763 29 100.0 CGGGATCTTG ............................. AACTGATTT ========== ====== ====== ====== ========== ============================= 5 29 39 GTGTCAATTCCTTATAGGTAATGTATATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.97%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [194,1524] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_021044 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1277585 30 100.0 36 TTATGAAGAA .............................. CTATACAGGTTGAAATGGATGCAGGATTAAGACCAC 1277651 30 100.0 33 TTAAGACCAC .............................. TGAATATGATTGAACAATCAATTTTTATTGCAT 1277714 30 96.7 38 TTTATTGCAT .............................G AAATCCAGATATGTCAATGCATGGAAAGCGCCAGAAAC 1277782 30 100.0 CGCCAGAAAC .............................. CTTTTTATAAA ========== ====== ====== ====== ========== ============================== 4 30 35 GTGTCAATTCCTTATAGGTAATGTATATCA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [1986,1307] Score: 0/0.18 # # Final direction: F [0.41,0.37 Confidence: LOW] >NC_021044 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1269797 29 96.6 39 TAAGGTATTA -............................ ACAGAAAAATGAAGTTGGAATCTACTTGTTACGCAAATC 1269865 29 100.0 40 TACGCAAATC ............................. GTATAAAAATGAGTAAAAGCAATTATGAAAAATATGCAAT 1269934 29 100.0 40 AATATGCAAT ............................. GAATTGACATGAAGAAATTTATTAATTGCATGACATATGC 1270003 29 100.0 TGACATATGC ............................. AACTGATTTA ========== ====== ====== ====== ========== ============================= 4 29 39 GTGTCAATTCCTCATAGGTAATGTATCTC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:62.07%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [145,422] Score: 0.18/0.18 # # Final direction: R [0,0.96 Confidence: HIGH] >NC_021044 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 1277858 31 93.5 46 AGATGGAGGT -.............................C AGTTACGTTGAAATTGATGATGTAGACGTTTCACAGGAAGCATACG 1277935 31 100.0 45 GAAGCATACG ............................... TGAAACAAGATTTGGTAAGGATTATTATATTCTTAGTATGCAGTA 1278011 31 100.0 GTATGCAGTA ............................... ACTGGTTTTA ========== ====== ====== ====== ========== =============================== 3 31 45 AGTGTCAATTCCTTATAGGTAATGTATATCA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.97%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [2259,1077] Score: 0.18/0.18 # # Final direction: R [0.18,0.78 Confidence: MEDIUM] >NC_021044 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1279117 29 100.0 36 ATAGATACAT ............................. GGACATAAAAAACGCAGGTCTTATTATTATTCTATT 1279182 29 100.0 32 TTATTCTATT ............................. TTGAGCCTGATGAATTCAGTAGGAAAATAAAA 1279243 29 100.0 40 GAAAATAAAA ............................. CCAATATATGAAACATATTATGAAACCGAATACTATGAAG 1279312 29 100.0 TACTATGAAG ............................. AACTGGTTTTA ========== ====== ====== ====== ========== ============================= 4 29 36 GTGTCAATTCCTTATAGGTAATGTATATC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.97%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [1077,633] Score: 0/0.18 # # Final direction: R [0,0.37 Confidence: MEDIUM] >NC_021044 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 3438829 19 100.0 43 TTGTAAGGTG ................... ATCCTCATCAGTTCCTATTAAAGCTAGTTGAAACTGTAAAGAA 3438891 19 100.0 45 CTGTAAAGAA ................... ACTATCCTCATTAGCCTGTAACTTCAATGTTAAAACTGTAAGCGG 3438955 19 52.6 53 CTGTAAGCGG ..........--------- TGCGTAGATCACTTTCTGTCGAATGCCCACAAACATATTGAAACTGTAAAGAA 3439027 19 100.0 47 CTGTAAAGAA ................... TTAGCATTAGGCTCAGATATTGAAAGACTGTCTGAAACTGTAAACGG 3439093 19 94.7 44 CTGTAAACGG ............T...... AATTCGAGAAACAATATCCCTTAACTGGTTGAAGCTGTAAGCAA 3439156 19 94.7 CTGTAAGCAA ............T...... ACAGACAGCC ========== ====== ====== ====== ========== =================== 6 19 46 AATGTCTACTGAGGTAGAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.16%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [5416,1197] Score: 0.18/0.18 # # Final direction: F [0.59,0 Confidence: HIGH] >NC_021044 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 748949 32 96.9 33 ATATGCTGAT ......G......................... CTCAAACTCTTTAAGCTTTTCTATCTTTTCAGT 749014 32 96.9 34 TCTTTTCAGT ..................G............. TTCTTGGTCTTAACTTCAAAGAGGCTAATTCTAT 749080 32 96.9 34 CTAATTCTAT .........................A...... TGCTACAGCAATATCTCTCTCACTTTCAGCTCTT 749146 32 96.9 34 TTCAGCTCTT .........................A...... GCAACTACGCTACGACAGGGGATATACCGACTAA 749212 32 100.0 35 TACCGACTAA ................................ ACAACACGACAGGATGGCAGGGCACCGGCGAAATC 749279 32 100.0 33 CGGCGAAATC ................................ ATCATAAGCATTATAATCTTTATCTTTGATTAA 749344 32 100.0 33 CTTTGATTAA ................................ CCGTTTCCCCGATTTTCGACTTGCAGACCAGTC 749409 32 100.0 34 CAGACCAGTC ................................ TCCTGCGAAATGTTTTCTTCACCTTGCACATTTT 749475 32 100.0 32 TGCACATTTT ................................ ACACCGATAGCAATTCCAACTACACCTGCACA 749539 32 100.0 32 CACCTGCACA ................................ TTAGTAATGTTGATTTCAAGTCAATTCCATAT 749603 32 100.0 33 AATTCCATAT ................................ GTATTTCCCTAATTTTGCCTCGTCTGTATTGTT 749668 32 100.0 34 CTGTATTGTT ................................ GATACATGCTCGAATATAAAGCCTCGGCACGGTT 749734 32 100.0 33 CGGCACGGTT ................................ TGAGCCATCCTCAAAACTTACATTCCTTAATGT 749799 32 100.0 33 TCCTTAATGT ................................ CAAAACCAAAAACCATCACAAGTGGTTCAATAA 749864 32 100.0 33 GGTTCAATAA ................................ TAAAAAGGAGAAATTAGCAAAAATGTCTTTATT 749929 32 100.0 35 TGTCTTTATT ................................ AACGTAAAACGCCATAGCACAGCATGCCGTAATTG 749996 32 100.0 33 GCCGTAATTG ................................ TACATACATGTTCCAATATCCGCCAGCACTGTT 750061 32 100.0 33 CAGCACTGTT ................................ TTAAAGCAAAATTTTATAGCCCTGGAACTAATT 750126 32 100.0 33 GGAACTAATT ................................ GAATATAGAGGATAAAAAACAGTTTGCATTAAT 750191 32 100.0 33 TTGCATTAAT ................................ GCTTTGGTGCCGGTAAAAGCGTTAATTTCAACG 750256 32 100.0 33 AATTTCAACG ................................ CGGAAAGGCCTTTGACCTTTTAACTCACGATTT 750321 32 100.0 35 CTCACGATTT ................................ GATTATTCTTTTTAAAATTATCTCTAAATAATTTT 750388 32 100.0 34 AAATAATTTT ................................ ACTTGTCTGGATTCCACCCCATAGTGTTACGCCT 750454 32 100.0 34 TGTTACGCCT ................................ TCCTGTGCATAAGCAGTAACCCAGCATCCCCACT 750520 32 100.0 34 CATCCCCACT ................................ TCTGCTTCCGGGAATACGCATACTTTCGCCTTAT 750586 32 100.0 34 TTCGCCTTAT ................................ ATAATCATAGTCTGATTTTTGTTGTCATAGCTAT 750652 32 100.0 32 TCATAGCTAT ................................ TTTGCAATGTTTTTAAAATCCAGAGAATTGAT 750716 32 100.0 35 GAGAATTGAT ................................ GAATGGTGTTGTATCTGCATAGTCAAACTGATATT 750783 32 100.0 33 AACTGATATT ................................ GTATGCCACTATTTATGGATATAACATATACAT 750848 32 100.0 34 ACATATACAT ................................ ACAGCATTCATACACTTTTGGATAAACTCCCAAA 750914 32 100.0 32 AACTCCCAAA ................................ GTAAGGGTTTTTATATTTTTATGGATAATAGC 750978 32 100.0 32 GGATAATAGC ................................ GCAGCTCCCTTTTTTTAGAACGATAATTTGTT 751042 32 100.0 34 ATAATTTGTT ................................ CTTTGAGCAGTGGTATGTTTCCAATGGTTTTAGT 751108 32 100.0 TGGTTTTAGT ................................ AGCAATATTG ========== ====== ====== ====== ========== ================================ 34 32 33 ATTTCAATCCACGCTCCCACGAGAGGAGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [9,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-3.70,-4.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [70.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1940,479] Score: 0.18/0.18 # # Final direction: R [0.55,5.55 Confidence: HIGH] >NC_021047 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 384525 32 100.0 36 NNNNNNNNNN ................................ TGCGAGATCCTCAGGAAATGGTCAAACAGGACTACC 384593 32 100.0 36 NNNNNNNNNN ................................ TTCTCTGCGTCCTCGGCTTTCTTCTTCCAGTCAGCC 384661 32 100.0 34 NNNNNNNNNN ................................ ATCCAGCAGATAGACTTTTTCAGTATTGTGATTG 384727 32 100.0 33 NNNNNNNNNN ................................ TCTATATTCATGATACTTTCGTTTTTACAAACC 384792 32 100.0 36 NNNNNNNNNN ................................ CGTCAGAGCGTCCATGTGCTCTTCCAGAGCCGCCAG 384860 32 100.0 34 NNNNNNNNNN ................................ GAAACCGAAAGGAGAGTGCGATTGGTGAGTGGGA 384926 32 100.0 33 NNNNNNNNNN ................................ CCGCCGAAGCAGGCTGGCCTTTCTTTCTTATTT 384991 32 100.0 33 NNNNNNNNNN ................................ AAAACGTCAAAAGATGCTGTCCCCATTACTTCT 385056 32 100.0 1 NNNNNNNNNN ..............................G. NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 9 32 34 GTCGCTCCCCTCGCGGGAGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [5,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.90,-6.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [20.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2002,132] Score: 0.18/0.18 # # Final direction: F [5.46,0.64 Confidence: HIGH] >NC_021054 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3121560 36 100.0 40 NNNNNNNNNN A.GC.G.GG.GG.TCA...C...G..TG........ TTGCGGCGAGCACGTCTCACCCAGCAGGCGGTGAGGTTGG 3121636 36 100.0 39 NNNNNNNNNN .................................... ACGGACGAGCTGGACCGCATCAGCGATGCTGAGCTGAGG 3121711 36 100.0 38 NNNNNNNNNN .................................... TTCGGGAGCATGCCGCAGCTGCGGATGACACGCTCCAA 3121785 36 100.0 36 NNNNNNNNNN .................................... CACCAGGATCAGCGCCAAGCCAGTTAGCGCAATCCA 3121857 36 100.0 36 NNNNNNNNNN .................................... CTCCCGGACCATCTGCAGCTCGCCCGGGTCCATGCG 3121929 36 100.0 37 NNNNNNNNNN .................................... CGGAGTCATCCGCGCGGGCCGGCGCGATTGTTGCCGG 3122002 36 100.0 36 NNNNNNNNNN .................................... TGGCGATTTACGACGCTGACGGGAACTCGTGCGAAT 3122074 36 100.0 25 NNNNNNNNNN ................................TCCG CGAAATTCACTGCGCGTTATTCAAG 3122135 36 100.0 41 NNNNNNNNNN .................................... CCGAGCCGACCATCCGCATCACACCGAAAGGGTTGGCGCAA 3122212 36 100.0 27 NNNNNNNNNN .................................... ACGTTGGAAGCGTTTCGAGCGTACGGA 3122275 36 100.0 40 NNNNNNNNNN C................................... CTCGGACAGCATCTCCCCGGGCGGGCAGCAGATATCCCAT 3122351 36 100.0 41 NNNNNNNNNN .................................... CGACCCGTGGCCGCCAGGTTGCCGCCGCCGTTGCTCACCTG 3122428 36 100.0 36 NNNNNNNNNN .................................... CCGCTGGGGGCAGGCCCAGGTGGGACGGTTCCTCGC 3122500 36 100.0 37 NNNNNNNNNN .................................... ATGAGAATAAGATGTCAGGCTGGTGCTGCGTTTCCGT 3122573 36 100.0 35 NNNNNNNNNN .................................... GCTGGGCAGGCACGGCAGGTGGGACGGTTCCTCGC 3122644 36 100.0 46 NNNNNNNNNN .................................... CAGCGCAGACGGAAGCGTTTCGAGCGTACGGACTTTCCGGATGCAG 3122726 36 100.0 37 NNNNNNNNNN ................T................... AGGCTGAAATTGAAGCCGGAAATGACGACGCATTGGT 3122799 36 100.0 35 NNNNNNNNNN .................................... CTAAGCCCGCTAATCCCGCACAAGTGGTCAGAAAA 3122870 36 100.0 39 NNNNNNNNNN .................................... CTGATGATTGGTCGGCGTATGACGTGCTACTGAGGTGTT 3122945 36 100.0 28 NNNNNNNNNN .................................... TAGAAGGCGATGTGGTGCTGGATTTCGA 3123009 36 100.0 36 NNNNNNNNNN .................................... TTGGTCAAAAGCTGTCGCCCAAGCATGAGGCAAAAA 3123081 36 100.0 41 NNNNNNNNNN .................................... ACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTATG 3123158 36 100.0 38 NNNNNNNNNN .................................... GTGCAAGAATTCCGGGTTGCAGTGCAACACGGTTTTAA 3123232 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 24 36 36 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [19-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [37,50] Score: 0/0.18 # # Final direction: R [0,1.42 Confidence: HIGH] >NC_021054 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3118879 36 100.0 38 NNNNNNNNNN .................................... TCGGGCACGGCCGAAACACCGCGCGAAGGGCGGTTCAA 3118953 36 100.0 40 NNNNNNNNNN .................T.................. TGGGAGGATGTCACTCGGACATAGCTGTCATCGGCGGTGT 3119029 36 100.0 40 NNNNNNNNNN ................................G... ATGGAGCAGTAGCGTGGCTGTGGTGTGGCGGGCGATATGC 3119105 36 100.0 37 NNNNNNNNNN .................................... TGCTGCACCTCCCGCACCCGGTGCGATTCTGCGTCCA 3119178 36 100.0 36 NNNNNNNNNN .............................C...... CCCGATAGTCGCGCTCGTCCATGTCCCACCATGAGG 3119250 36 100.0 35 NNNNNNNNNN .................................... TACCTGATAGAAGCCGGAAAGCTCCGTGCCGTCAG 3119321 36 100.0 38 NNNNNNNNNN .................................... AGGGCACTGGACCTGTATGAGGCACAGATGGCGTACTA 3119395 36 100.0 40 NNNNNNNNNN .................................... CCGGATCGGTTACCCACGCCGATTTACTGGCCATCGTCGG 3119471 36 100.0 35 NNNNNNNNNN .................................... ACTTGCGCGCACAACGCATCCGCCATCCACGGGGC 3119542 36 100.0 37 NNNNNNNNNN .................................... CTGAAAGGGGGACTGTGGACGAGTTCGCGCTCAAAAT 3119615 36 100.0 45 NNNNNNNNNN .................................... TTCGGGAGCATGCCGCAGCTGCGGATGTGGTGCTGGAGTGATAAA 3119696 36 100.0 37 NNNNNNNNNN .................................... CGGACTTGATCGACGCGAACCTGTCTGACGCGAACCT 3119769 36 100.0 38 NNNNNNNNNN .................................... GGCTGGAAAAGGGCGCGGGGCAACCGCAGTGTTATTGA 3119843 36 100.0 39 NNNNNNNNNN .................................... GCGAGAATAAGATTGTCAGGCTGGTGCTGTATTTCGCTG 3119918 36 100.0 36 NNNNNNNNNN .................................... CATTAGTTGGTGTTGTGATCGCTAAACGCCGGGGCA 3119990 36 100.0 38 NNNNNNNNNN .................................... CTATCCGCGGGAAGAGATCACGAATCCGGCGTCGAAGG 3120064 36 100.0 38 NNNNNNNNNN .................................... ATGCTGAGCTGAGGCGCCGGATGATGGTGGTGCTGAAG 3120138 36 100.0 26 NNNNNNNNNN ...........................CA..C..CA GCTGCGGATGTGGTGCTGGATTTCGA 3120200 36 100.0 1 NNNNNNNNNN .........A..A.ATC.A.G.GAACCG.CCCG.TG NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 19 36 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [3-24] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [38.3-36.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [150,29] Score: 0.18/0.18 # # Final direction: R [0.59,0.74 Confidence: LOW] >NC_021056 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 305 29 100.0 32 GGGCGAAGGC ............................. TCCCGGTTGCTCCCTCGGGTTGCGCCCGGTTG 366 29 100.0 32 CGCCCGGTTG ............................. AGCCCGGAGTTCCCGCGCGTGGACGCAGGTTG 427 29 100.0 32 ACGCAGGTTG ............................. ACTTGCCGATGGGGTACGAGAAGTGGGAACGG 488 29 100.0 32 GTGGGAACGG ............................. TCTGGTACGCGGCCCGTCGGGGCTGCTCGACG 549 29 100.0 32 CTGCTCGACG ............................. TGGGCCCAGTGACGCGGCGAGCGGCCGGGGAC 610 29 100.0 32 GGCCGGGGAC ............................. CGTGCGCCACAGCCACAGACCAACCGCGCCGA 671 29 100.0 32 ACCGCGCCGA ............................. TCTCGGCGCTTGCGGCCCTGGAGGTCTTCGCT 732 29 100.0 32 GGTCTTCGCT ............................. GCACTAGGTAGTGCGTAAGGTTTGCCTCCTGC 793 29 100.0 32 TGCCTCCTGC ............................. CACCTCGCCAAGCTGGACCGGAGCTTCAAGCC 854 29 96.6 GCTTCAAGCC .........A................... GGGTACAGCC ========== ====== ====== ====== ========== ============================= 10 29 32 GTGCTCCCCGCGCGTGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [28.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [306,156] Score: 0/0.18 # # Final direction: F [0.68,0.37 Confidence: LOW] >NC_021056 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 40553 29 100.0 32 TCACATCCCA ............................. GGCCGCAGCTTGCAGACCATCGAGCGCAACGT 40614 29 100.0 32 AGCGCAACGT ............................. GAGGCCAATGCAGAGGGCTTCGTAAAGCCGTG 40675 29 100.0 32 TAAAGCCGTG ............................. ACCGCAAAGCCCCACCCGATCCGCACCCGCGC 40736 29 100.0 GCACCCGCGC ............................. AAGGCCCTGGC ========== ====== ====== ====== ========== ============================= 4 29 32 GGGACCATCCCCGCGGGCGCGGGGAGCAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [4,1] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [38.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [57,82] Score: 0/0.18 # # Final direction: F [0.64,0 Confidence: HIGH] >NC_021056 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 51198 30 100.0 31 AGCGCAACGT .............................. TGATCGCCGCGGCGAACCCGGAGCGGATCAC 51259 30 100.0 31 AGCGGATCAC .............................. CCGACCCGGCCGCCGTCTCCTACGACGTCTG 51320 30 93.3 ACGACGTCTG ...................T.........T CTTGCTGAAC ========== ====== ====== ====== ========== ============================== 3 30 31 GGGACCATCCCCGCGGGCGCGGGGAGCACC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [4,1] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-14.30,-14.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [28.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [309,114] Score: 0.18/0.18 # # Final direction: F [1.33,0.27 Confidence: HIGH] >NC_021056 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 78937 29 89.7 36 CTGCGAGATG ...G..T................A..... TCGAACATGAGGTCAACGCCCATGTTCCCGACGCGG 79002 29 82.8 32 CCCGACGCGG ----.......A................. GTTCCCCCCTCCTGCGTTCAGTACGGCGATCA 79063 29 96.6 32 ACGGCGATCA ......................A...... TGCTGTCTGCGCGGCAGGGTCGGCTTGTCGCT 79124 29 96.6 32 GCTTGTCGCT ...................T......... CCGACGCTGACTTCCGGCTCTCCGCCGAGGAC 79185 29 100.0 32 CGCCGAGGAC ............................. ATGGAGCAGTTCTTTTCCGACGCCGCCCCCAT 79246 29 100.0 32 CCGCCCCCAT ............................. CCTCGCTTCGTCAGCGCGGGTCACGGTCGAGG 79307 29 96.6 32 ACGGTCGAGG ......G...................... ACATCCTGGCCGGACGCGACCTTCCACAGCAG 79368 29 96.6 32 TCCACAGCAG ...............C............. TGCGTCCTCTCTCAGTCGGATCAGGTGGCGGA 79429 29 100.0 32 AGGTGGCGGA ............................. TGGGCATGATGCGTGTCCTTCCTGGTGCCGGG 79490 29 100.0 30 TGGTGCCGGG ............................. GCACGTCGGCTTCGTCGAGCCCGGCCGGGC 79549 29 96.6 32 CCGGCCGGGC C............................ CGGGACGTCATCACCGGAGCGTGGTGGTACGC 79610 29 100.0 32 GGTGGTACGC ............................. ACCCAGCCCTTCCAGAAGGACTCGACCCGGTG 79671 29 100.0 32 CGACCCGGTG ............................. GCGTCACCGAGTTTGTCGATCTCGAACAAGGG 79732 29 100.0 32 CGAACAAGGG ............................. CCGCCGCAGGCACAGCGGCCATCGGCACGAAG 79793 29 100.0 32 CGGCACGAAG ............................. CGCTTAGGTCTCCGTCCCACTTTGGCGGCAGA 79854 29 100.0 TGGCGGCAGA ............................. ACTGACTGACC ========== ====== ====== ====== ========== ============================= 16 29 32 GGGACCATCCCCGCGTGCGCGGGGAGCAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [4,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [159,293] Score: 0/0.18 # # Final direction: R [0.37,0.68 Confidence: LOW] >NC_021056 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 91194 29 100.0 32 NNNNNNNNNN .A.TTGTC......GG............. ACCAGGAGCGCGAGGGCCAGGGTCCGGAAGAG 91255 29 100.0 32 NNNNNNNNNN ..............G.............. ACCGTGATGCCGTCCCCGCCGGGATTCGGCTC 91316 29 100.0 32 NNNNNNNNNN ..............G.............. CGGACAAGCACCTTCGCCGTGCTCTCCGCAGC 91377 29 100.0 32 NNNNNNNNNN ............................. ACGGAGACGGTGGGCGGGTACTCGCAGGCGTC 91438 29 100.0 32 NNNNNNNNNN ............................. AGCGCGAAGTACCTCGGCGACATGATGGACCA 91499 29 100.0 32 NNNNNNNNNN ............................. CCCGCTCTCGGGGATCAGGTCCGCGTCGGCCT 91560 29 100.0 32 NNNNNNNNNN ............................. TTCACGTCGTCCTCGTCGTCGGCGCGCGTCTC 91621 29 100.0 32 NNNNNNNNNN ............................. CCCGAGCTTCTGCAGCAGGGACAGCTACGCCC 91682 29 100.0 32 NNNNNNNNNN ............................. CCTGTATCAATCGGTGTACCGGGCTCACTTTT 91743 29 100.0 32 NNNNNNNNNN ............................. TCCGACCTGCTGACGCTCACGAAACTGTGAGC 91804 29 100.0 32 NNNNNNNNNN ............................. GCGGTACGCCGGTCCCATCAGGGGTGTTGTTC 91865 29 100.0 32 NNNNNNNNNN ............................. CCGTTGTTCTCAGGCGGTACGTCGTTTCAGCA 91926 29 100.0 32 NNNNNNNNNN ............................. TGTTTGCTCTGCTGGGAGGGCTTCTTGCCCTC 91987 29 100.0 32 NNNNNNNNNN ............................. ATGGGTTCGCTGATTCGTTCGCTGTTCTTCGT 92048 29 100.0 32 NNNNNNNNNN ............................. TACAGCTGGTCCAGGAGGGCGTGGCCGCGCGG 92109 29 100.0 32 NNNNNNNNNN ............................. AGCCTCGCGGACACCCACGGGCGGCTGTACCC 92170 29 100.0 32 NNNNNNNNNN ............................. CGGGCGGCTTCCATGTCGGCTGCGGCCTGGGC 92231 29 100.0 32 NNNNNNNNNN ............................. AGCGGGTTCACTTTCGGCCTGATTCCGGACGG 92292 29 100.0 33 NNNNNNNNNN ............................. CAGCCACGGCATCGTCATCGACCGCCGCCTGGC 92354 29 100.0 32 NNNNNNNNNN ............................. ACAGTGCCTCACCCCGGCTCGGCTTGCCTGGC 92415 29 100.0 32 NNNNNNNNNN ............................. GTTTCATAGCTAAAGATTACGACAGCTACACA 92476 29 100.0 32 NNNNNNNNNN ............................. TGCGTGAGGATCGCGGCGGCGACGTCGATCGT 92537 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 23 29 32 GGGACCATCCCCGCATGCGCGGGGAGCAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [36.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [672,353] Score: 0/0.18 # # Final direction: R [0.37,0.68 Confidence: LOW] >NC_021058 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 344177 23 100.0 42 GGCCATAATA ....................... CGGGGTTTTAGGGGATGTCCCCCTAATGCCGGCCTCCCAAGT 344242 23 100.0 41 CCTCCCAAGT ....................... CAGTTAAAGTTGAAAGAAGCGGCACAAAACGAAGAGAAAGT 344306 23 100.0 42 AAGAGAAAGT ....................... CTCACCAACTTGCACGGGCACATTTGCTTGGCCCCCATCTCC 344371 23 100.0 45 CCCCATCTCC ....................... CCTATTGCAAGCTTTTGGATATGATTCACAAAAGATGGATACAGA 344439 23 100.0 40 TGGATACAGA ....................... CATGGAAAATCACGCTGAACTATATACTTTCACTTACAGA 344502 23 100.0 39 CACTTACAGA ....................... CCTCTCGCAAAAAACGGGCAATATCGTTAGGAGAGGGCG 344564 23 100.0 41 GGAGAGGGCG ....................... CTTTGTACAATACTGTGTACATAACTGTTGCACATCTTCTA 344628 23 100.0 43 ACATCTTCTA ....................... CATTCAGTAGAAAGATTGCTAGAAGTTAGAATCAATTCGTTAG 344694 23 100.0 43 AATTCGTTAG ....................... CAAATAATTAAGTACTTACCGGAACCTATACAACGTGTTCTCA 344760 23 100.0 46 CGTGTTCTCA ....................... CATTGATAGATTGAGAAAGAGAGATTGAAAGATAGAAAGGTTTATA 344829 23 100.0 42 AAGGTTTATA ....................... CATTCGATATTTATGTAAAAGGCAGAATGTACGAATTTCCAG 344894 23 100.0 39 GAATTTCCAG ....................... CAGACAGTATCGGCGGAGTTGTTAGGGATGGTATCATTT 344956 23 100.0 41 GGTATCATTT ....................... TAGTTATAGAAATAAGTACATTAGCTTTGCAATTTCAACTA 345020 23 100.0 41 ATTTCAACTA ....................... CAAGTTTTGAGTAAGGAGGAGTTAGAACAGTTGTTAAAGGA 345084 23 100.0 43 TGTTAAAGGA ....................... CACTGATTAGTCTAGTGTCGTTAGGGCAAAAATGGATCTTTAA 345150 23 100.0 42 GGATCTTTAA ....................... CAAGCTGTTAACGTTGATCGCTATCAAGAGTGCTTTCTATGA 345215 23 100.0 45 CTTTCTATGA ....................... CAGAAGTTCGGAGTTATTGCCAAAGCGTGGAAAAACCAGGATCAG 345283 23 100.0 42 CCAGGATCAG ....................... CAAAATCATGCTGAGTTGTACGTCTTTACAGTGAGCAAAGGT 345348 23 95.7 42 GAGCAAAGGT ..............C........ CATGGAGTAAGTGAGGAATGCATAAGACAAGCGATATCGAGT 345413 23 100.0 42 GATATCGAGT ....................... CTCATCATTTACCATTCCATCAAACAGCACAAGTAAGGGGGT 345478 23 100.0 42 GTAAGGGGGT ....................... CCTATTCCTTTTCGAAAAGGATGCAAAACGATACCAATATTT 345543 23 100.0 43 ACCAATATTT ....................... CATCCGTAACTTTACAATAAAAGTAGAAAGGAGGTATTGTAAG 345609 23 100.0 41 GTATTGTAAG ....................... CTAGACAAGTTTTTTTATGAGTGAACTAGCTTTGAAAGAAT 345673 23 95.7 41 TTGAAAGAAT T...................... CACTTCTAAGTAGAAGTCAAATTCCAATATAGAAATATAAG 345737 23 100.0 39 GAAATATAAG ....................... CCTATGCTCTCATTTTAGTATCTCTGAAGTCAAAGATGA 345799 23 100.0 43 TCAAAGATGA ....................... CTTAATGATTCTGACCTTCTAGTGGTTATGAATGATCAAGAAG 345865 23 100.0 42 GATCAAGAAG ....................... CGGCAGTGGGATATCTATCAGAGCTCTGGCGTATTTTGTAAC 345930 23 100.0 43 ATTTTGTAAC ....................... CTTTCATTGTTAGGCATTGATAGTTTTAATGCCATAATGTAAC 345996 23 100.0 39 ATAATGTAAC ....................... CTATGCTCACCTGGAGAGAGACAAATTCTACGGAAGTTT 346058 23 100.0 43 ACGGAAGTTT ....................... CAGAGGTTGGGGGGAGAGAGGTGAAGTCCCTAAAATCTTTCTA 346124 23 100.0 41 AATCTTTCTA ....................... TAGTGTAAACGGACTAGAAGATGGATCCTGTAACGTCATGA 346188 23 100.0 45 AACGTCATGA ....................... CCTAAAGCAGTCATTGTCCCTATATCCTAGGTATTCTAAGAATAT 346256 23 100.0 40 CTAAGAATAT ....................... CGACAATGCCTATTGATAATATTACAATTATACCAAACAA 346319 23 100.0 38 TACCAAACAA ....................... CCTGCCCATTTAATTCTCCTAGCAATCTTACTATATTT 346380 23 100.0 42 TACTATATTT ....................... CGTTACTAGAGAGGAATACAAAGAACTTATTGGATTTCCTGA 346445 23 100.0 40 GATTTCCTGA ....................... CCAGTAGCCAATATGCCGTTCGCCTTCATCCTTTACGCTG 346508 23 100.0 40 CTTTACGCTG ....................... CTATATAATTATCGATGACGAAACAATCTTCATTAAATTT 346571 23 100.0 42 CATTAAATTT ....................... CTGGCCTTACATTGCGGGTGCTGCTATTGCAGCAGCAGGCAT 346636 23 100.0 43 CAGCAGGCAT ....................... CTACTTCAGTCCATAGATCACCGTTTGCCGTGATGATACTTTT 346702 23 100.0 38 TGATACTTTT ....................... CTTCCTGGATTTGCTACATTTCCGTTAACATAAGAACC 346763 23 100.0 43 CATAAGAACC ....................... CAAGCTAAGAAAGAGCAAGAGAGAGATAAGCAGCTAAGGGATC 346829 23 100.0 42 CTAAGGGATC ....................... CAAAGTTTTATAGCCTCCCTAATGACCTCGCTTCGGCTTAGA 346894 23 100.0 42 TCGGCTTAGA ....................... CATTAATTTTTTAAAAGAGATGAATGTTAAGTTTCAAGTAAA 346959 23 100.0 41 TTCAAGTAAA ....................... CCAATAGAGGCAAACCTATCACCTTCCATGATTCTCTTTAA 347023 23 100.0 43 TTCTCTTTAA ....................... CGCGTCCAGAATAATAGATGATATCCTCGATGAACATATGACG 347089 23 100.0 41 ACATATGACG ....................... CAAAATGACACCCCAAAACCTTGAAACCAAAAATATGAAAG 347153 23 100.0 41 AATATGAAAG ....................... CAAAATGGAGGAAGTAAAATTAAACGTGTATAACAAAATTG 347217 23 100.0 42 AACAAAATTG ....................... CATAACAATCCCAAAAAGTATTGCGGAAGAACTCTTGAGGAA 347282 23 100.0 40 TCTTGAGGAA ....................... CGGTAATTCTTGGTTATTGTTCAGTCATCCCAGACCAAGA 347345 23 100.0 39 CAGACCAAGA ....................... CCAAGGCACGAGAGAGTTAATCGTAGAAGCCATAGCGAG 347407 23 100.0 40 CCATAGCGAG ....................... CATAAATATGGAGATACTGAAAAAAATATTTAAAAAATTT 347470 23 100.0 44 TAAAAAATTT ....................... CTAAGGGGTTTGTTTGTTTGGGGTTATCTATAGATAGAGAGATA 347537 23 100.0 40 TAGAGAGATA ....................... CCTGACTTCTCTCGTTAATGAGCCTGTTAGCTGATATGTT 347600 23 100.0 39 CTGATATGTT ....................... CCCCTTCTCTTCATGAAGAAGTACGTTAAAAAATAAGGC 347662 23 100.0 41 AAAATAAGGC ....................... CACAAAAACCCGGGGGGATTCCCCGGTTTCCCCGGATTCCC 347726 23 100.0 39 CCGGATTCCC ....................... CTCGGAAGGATTCTATTCAGAAATGAGAAAGATTTCTAC 347788 23 100.0 43 AGATTTCTAC ....................... CGAAATAATATTGACGTATGATGAAATCAGGGAAAATGATTTT 347854 23 100.0 41 AAATGATTTT ....................... CTTGAAGGATTTTTTCAATATTGCAGAAAGAGATGAGTTAG 347918 23 100.0 45 GATGAGTTAG ....................... CAAGTATCAAATATCCTATCTTGGACTAAATGTACATTATAAATT 347986 23 100.0 42 ATTATAAATT ....................... CATTTTTACGGCCTGCTGCATGAAAAAAATACAAACTGTATA 348051 23 100.0 39 AAACTGTATA ....................... CAACATTACACTAGCTCCAGTTAGTGAAAAACCTCATAA 348113 23 100.0 42 AACCTCATAA ....................... CTAAGTTTAACCCCGCTTTCACATTAAACGGACAAACCGTAA 348178 23 100.0 42 CAAACCGTAA ....................... CATCTTCTTGAGATACTGCTTTATCTCCTCTTCTTTCATGTT 348243 23 100.0 45 CTTTCATGTT ....................... CTAGCTCTCTAATTTCGTGGTCTAATTCTAGGAATAGTTCTTTTT 348311 23 100.0 41 AGTTCTTTTT ....................... CCTTAGTCTTTCTTCTGCTTCTACGAATTTCTTAAAGAACC 348375 23 100.0 41 TTAAAGAACC ....................... CGGTAATCCCCCCTATACCAGATGGAATGACCTAAGTAAAG 348439 23 100.0 45 CTAAGTAAAG ....................... CAAGAAAAGTAGAAAATTGTTAGAAAAAATGGCAATGGAAGTGCT 348507 23 100.0 42 TGGAAGTGCT ....................... CAAAATTAAGACACTACTGAGAGCAGGAGGGATATATGTTAG 348572 23 100.0 45 TATATGTTAG ....................... CCCTAATTCTTTTGAGACTAGTCTAGCTAAGCGTAACGGATAATT 348640 23 100.0 42 ACGGATAATT ....................... CTCAGAAACAGAAACAGCTCCTTCTTCAGTATCATTTGCCGT 348705 23 100.0 39 CATTTGCCGT ....................... CATGCTGATGACGTAATTAGGAGGGTGAAAAAATCGCTA 348767 23 100.0 42 AAAATCGCTA ....................... CGTATACCCAGTTTGCAAAAACGTTTCAATTTGTTGTCTTAA 348832 23 100.0 40 GTTGTCTTAA ....................... CGTCTTATAACGCCGTTTGGTATAGTTTGGTCAAGTTTAC 348895 23 100.0 40 TCAAGTTTAC ....................... CTTCATATTCGTACTCGGACTTTTCTACTTGAATATTTAG 348958 23 100.0 46 GAATATTTAG ....................... CTGAGCATAAGTTGAAGTATCTATTGAATCTGCATTATCAAAAGTT 349027 23 100.0 46 ATCAAAAGTT ....................... CATGCATTTATTCCAGTTACTGTAGTATCTTTAATTGATTCAATAG 349096 23 100.0 40 GATTCAATAG ....................... CCCTTCATTTTTCCAACCCCTAACTCAAATCTTAATACGC 349159 23 100.0 42 CTTAATACGC ....................... CGAATTTGCCAGACAATTCGCCTAAGCTTCTAGACTATTTAA 349224 23 100.0 40 GACTATTTAA ....................... CAATATATCATCAGTACCATACGTATCTTGAATCTCTCCT 349287 23 100.0 41 AATCTCTCCT ....................... CTTTTATCGGTGGTAATGGATTATTCCCCCAATACAGATAC 349351 23 100.0 41 ATACAGATAC ....................... CTCATATGCTTCCTGTAAATGATATATGGCGTCATTATACC 349415 23 100.0 42 TCATTATACC ....................... CATCGGGCACGCGGGCACTGTTCAACTAGTAAATCAGTTATG 349480 23 100.0 43 ATCAGTTATG ....................... CCATCAGATCAAGACCTAGTTTTTGTCCAGGTCTTATTATGAC 349546 23 100.0 43 TTATTATGAC ....................... CTAGATGATTCTGAAGTTGTCGAGTTCGTCGACAACAACGGTG 349612 23 100.0 45 AACAACGGTG ....................... CGAGCATTGATAACGTCTTCAGTCGTTACGAAATATTTTACATTT 349680 23 100.0 42 TTTTACATTT ....................... CGAAGAAGTGAAAGATCATCTTAAAGAAACTATACTATTGAC 349745 23 100.0 TACTATTGAC ....................... CTGAGGGTTT ========== ====== ====== ====== ========== ======================= 87 23 41 CTTTCAATTCTATAGTAGATTAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:73.91%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [176,274] Score: 0/0.18 # # Final direction: R [0,4.91 Confidence: HIGH] >NC_021058 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 353820 24 100.0 40 AAAACCCTCA ........................ TTACTAGAATGACAAAGGAAGCACTAGGGCGTTTAAAGGT 353884 24 100.0 40 GTTTAAAGGT ........................ TTCGATTAAAGGAAATATTTTTTGACTTACATTTTGCATA 353948 24 100.0 46 ATTTTGCATA ........................ TATTTCTAATTTGCAAATTAATAGATATGAAAAACCAAAACTTTTA 354018 24 100.0 41 AAAACTTTTA ........................ TAATCAATACATAAAACTGTGTAGAAAACTTTATATACCCC 354083 24 100.0 39 TATATACCCC ........................ TCCTTATTTTAGGTATTAGTTTATCCCAATCCAGGGTAG 354146 24 100.0 42 TCCAGGGTAG ........................ ACAAGTTAGGGACTACTTCTTGTAACTGCTCGGAGAACGCTT 354212 24 100.0 39 GAGAACGCTT ........................ TAGATGACTCTTTACTTTCGATCTGAGTTTTCTTAATCT 354275 24 100.0 38 TTCTTAATCT ........................ ATTAATTCCGTTATAACTTATGCGAAGAGTTTGATAGA 354337 24 100.0 40 GTTTGATAGA ........................ TTCTAGTAGCCTTTCGAAATTCCGGCATTGTAGTAAACGA 354401 24 100.0 42 TAGTAAACGA ........................ TTTCCTTTGCAAAATGTAATCCGGATCCGCCCCAATTTTCAG 354467 24 100.0 44 CAATTTTCAG ........................ CGTTCAATCATGACAGAGGCTAACCCCATTGCCCTTAACTTGTC 354535 24 100.0 41 TTAACTTGTC ........................ TTAAGCTTTCTATGATGTCATTGTTGATTATTATAACTTTA 354600 24 100.0 39 TATAACTTTA ........................ TAGACTCTAGCGTAGACTTTAAAATAAAAGAGAGGTGAT 354663 24 100.0 39 GAGAGGTGAT ........................ TTCTAGTAATATGGATTCTATACTATTCAAACGGGTATT 354726 24 100.0 37 AACGGGTATT ........................ CATACCACCGACTTCTCTATCTTATTAAGGTTTTATA 354787 24 100.0 40 AGGTTTTATA ........................ TTTGGCGGGTAAGTTCTCATTCTCATAAAGTTCCACGCGG 354851 24 100.0 39 TTCCACGCGG ........................ TATTTCGTTTTCCCCTGAGGGGGATTTGATTGTTTTCCA 354914 24 100.0 41 TTGTTTTCCA ........................ ATCCAGACATGACCAAATGGGTCATGTCTAGACCGTAAATT 354979 24 100.0 38 ACCGTAAATT ........................ TTAATATCGTAAAATATCTCAAGTAAAACTTCATTTGG 355041 24 100.0 39 CTTCATTTGG ........................ GTATTATTAACGCGAAAAATATCGTTATTATTAATACAA 355104 24 100.0 40 ATTAATACAA ........................ CTTAAAGCACCTACGCCGGCACCTATTAGTGTACCAATAC 355168 24 100.0 41 GTACCAATAC ........................ TTATCATTTCCAATTACTATCTCATGTGTATCGTGATATGC 355233 24 100.0 47 CGTGATATGC ........................ AACATAAGTAGAATTGAAAGAAGAGTAACATGTAGTACAACTCTCAA 355304 24 100.0 41 CAACTCTCAA ........................ CTGTCAATAATGAAGGTTACGTCTTTTATCCCTACTTCCTT 355369 24 100.0 40 CTACTTCCTT ........................ AATTCTTCTAAAAAATTAATTATTTCCTCTTTTATTTCAT 355433 24 100.0 37 TTTATTTCAT ........................ GCACCTATGGCGACCCAAAACAGCGTGGATCCGCTGA 355494 24 100.0 39 GATCCGCTGA ........................ ATATTTTTGATTATATTCTTTTTCTCAAGTATTTTTATG 355557 24 100.0 43 TATTTTTATG ........................ AATTATATCATATCAGTAAGCCAAACTAGTATCTCGAGCACAC 355624 24 100.0 41 TCGAGCACAC ........................ GATCTTTCCTTGTGCCAGCAGTTCCTCTAGCTCCTTGCTGC 355689 24 100.0 40 TCCTTGCTGC ........................ TAGGATTTACACCATAATAAATATCGGCGGTCTCCCTGTA 355753 24 100.0 42 TCTCCCTGTA ........................ AATACCTCAATTATTTCGCCTTTAGTTAACAATAATGGTTTT 355819 24 100.0 39 TAATGGTTTT ........................ TCCCATAACGCCTCAATGGGGAACGCGTGCTGATATTTT 355882 24 100.0 43 CTGATATTTT ........................ CATACCATTTATAAGGCTCCACCTTCGCCTTAGCCTTACCATC 355949 24 100.0 43 CCTTACCATC ........................ GAGTTTGACTTATCTCTCTACTGTTTTCCATTAGACTCACCCC 356016 24 100.0 40 GACTCACCCC ........................ CTGTTATTTCGTTGAACTGAACTACTACCGGAAGCTCTAA 356080 24 100.0 41 GAAGCTCTAA ........................ CCTATGGACCTTCTTAGGACCTCGTTTGTTAATCTTGGCCG 356145 24 100.0 40 ATCTTGGCCG ........................ TCTTGAAATTAAATCTAGAATTGATGGTATCGGCGTATAA 356209 24 100.0 40 CGGCGTATAA ........................ TTATAAAAATTCAAAATGTATACAACCATTCAGCATACAA 356273 24 100.0 42 CAGCATACAA ........................ AGGTTTTGGATTAAAGGTTGCTAGAGCATTAAATAGGATTGG 356339 24 100.0 40 ATAGGATTGG ........................ ATTTCTTCACGGTGTTTGAGGCAATACTCCCTATACTTCT 356403 24 100.0 39 CTATACTTCT ........................ TGCAATAACAGTTGTAGTAGTACTACTACTACCAGCAGA 356466 24 100.0 40 TACCAGCAGA ........................ GCCCCACCAGCCATAGAGATCAAGTTCAGAAGGAAAGGTA 356530 24 100.0 43 AGGAAAGGTA ........................ TAGGCTTTATTTTCTTTATAACACTGTAACGCTCTTTATTTAT 356597 24 100.0 40 CTTTATTTAT ........................ TTGGTTTTTTGCTTGGCAATTTTTGTCACTGGGAATAATA 356661 24 100.0 43 GGGAATAATA ........................ ATTCTAACGTTCCGTTTTTGAATGCTATCTTGAGAGGTTCAGA 356728 24 100.0 42 GAGGTTCAGA ........................ TCTTCGGGGATCGGTATCATGCCCCCAATCACACACAATATT 356794 24 100.0 39 ACACAATATT ........................ ATTATACCGTGAAAGTAACTTATAATTAATCAAAAATAG 356857 24 100.0 39 TCAAAAATAG ........................ TTTCTTTATTTGAAATCAGTAATCTGTTAGTGTTATTAA 356920 24 100.0 40 GTGTTATTAA ........................ AGTCAAAGCGACTGGTATGCCCCAGTTCTCCGCATAAAAT 356984 24 100.0 41 CGCATAAAAT ........................ TCTGCCCAGAGAATTCTTTATGGTTCTGGATATCCTTGGTC 357049 24 100.0 39 ATCCTTGGTC ........................ TTGGACTGATGAAAAGTGGATATTGCTCTATGAAATCAT 357112 24 100.0 41 ATGAAATCAT ........................ TTACCAATTAATTCACTAAACTCATCTTGACTAATTTTTAT 357177 24 100.0 40 TAATTTTTAT ........................ GGATGACCGGCTTCAAAAAATTCACTTGTATCTAAATTTA 357241 24 100.0 40 TCTAAATTTA ........................ TATAATAGATTCTCTTTATTTTTCAGGTTAAATCCAATAT 357305 24 100.0 39 AATCCAATAT ........................ GGGCAAAAAGTAGAGAGTAAAGTTAGAAAGTAAAAACAG 357368 24 100.0 41 GTAAAAACAG ........................ AATCTAATAGAGGAGCTCGAAAAGTACAAAAAAGAAGGAGA 357433 24 100.0 45 AAGAAGGAGA ........................ TATTTTTCAATTTTGCAGAAGTGCTTGGGCCCTTTGTCGGTCAGT 357502 24 100.0 40 GTCGGTCAGT ........................ TCTGAATTATTGAATTTATACATAAATTACTATCAACATT 357566 24 100.0 39 TATCAACATT ........................ AAAATACTTTTAACTTGATTTGCTACGGCGGAACTTATG 357629 24 100.0 43 GGAACTTATG ........................ ATTCCTAAAGTTGTAATATTTACGCTTACATTTGTTTTTACTA 357696 24 100.0 39 GTTTTTACTA ........................ TTTCGTGGCTATGGTATTATCTTATCTTCTTCTCCGGTA 357759 24 100.0 41 TTCTCCGGTA ........................ TTTTCTCCTGATTTACTTCTTTTCTTTCTTCACTCATTTTC 357824 24 100.0 41 ACTCATTTTC ........................ GAGAAATTAAGAAATGATGGTTTTGAAGTGTTATGGACACT 357889 24 100.0 39 TATGGACACT ........................ TCCGAATAATTACTTCCGTGTAGCTATCAAGAAGATTAT 357952 24 100.0 40 AGAAGATTAT ........................ AGAATTTACAAAGAACTCAGAGGAGCATAATAGGGTAATG 358016 24 100.0 43 TAGGGTAATG ........................ AATTTCTATACTTCTTTTGAGTAAAATTGGAGCACCCCTGCTA 358083 24 100.0 42 ACCCCTGCTA ........................ TCATCAATTCCTAAAGCCTCTTCAATTTCCTTCAATGTACAG 358149 24 100.0 44 CAATGTACAG ........................ GTTAAAGTTGCTGAAAGTGGAGGTTACGTAGAACTATACCTACT 358217 24 100.0 40 TATACCTACT ........................ TATCCGTTAACATGAACATATCGGCAAAACCGAAGGGGAT 358281 24 100.0 39 CGAAGGGGAT ........................ AAACTTGTTTGACAAAGTCAGTATTGCAGACATAAGCAG 358344 24 100.0 40 ACATAAGCAG ........................ ATTTCTATCAATTTCTTAAACTCTTCACTTGAAAGTTCTA 358408 24 100.0 39 GAAAGTTCTA ........................ ATATGAACAAAGGTTTATGCTACTGAACAACGCAAAATT 358471 24 100.0 43 ACGCAAAATT ........................ AAGACGAAGATTATCAGACCTTTATTCATGTCAAATTAGGCTA 358538 24 100.0 40 AATTAGGCTA ........................ AGTTGAAGGAGATGAACGTCTGAGTCATGGGGAGAGTCAA 358602 24 100.0 41 GGAGAGTCAA ........................ TAAATTATGCCCATAGCCCCAAAAAGCTCTTGAAAAAGCAA 358667 24 100.0 41 GAAAAAGCAA ........................ GTTTTTGAAAAAATTTTTATAATAAACATTTCAGGGTTTGT 358732 24 100.0 41 CAGGGTTTGT ........................ TAACACATATGAGCTGGAATTATGTTATGAGGAAAACGGAA 358797 24 100.0 42 GAAAACGGAA ........................ GAGCGGGGGTATAGCAATTTTTCGAAAGCAGAAGAGAAAAAT 358863 24 100.0 40 AGAGAAAAAT ........................ ACCATTTAGTACTGCAGGGAAAAGGGAAGGGCTACAGGAC 358927 24 100.0 42 GCTACAGGAC ........................ TCTATGTGAAAAGAGCAACCATGCATCTTTCTCTGCATTAAA 358993 24 100.0 41 CTGCATTAAA ........................ ACCTTGTTTACCATACCACCTTAACCTACCAACAAACTCTA 359058 24 100.0 41 ACAAACTCTA ........................ CGATATTCGAAATACTTACCGCCCTCACCTAACTTTACGTC 359123 24 100.0 41 ACTTTACGTC ........................ ACCCGCATTCTAACACAACACTACGTTTCGCTTTTCGGCAT 359188 24 100.0 40 TTTTCGGCAT ........................ AACCAATTATCTCATAATCGTCAGTATTATCGATAACGCG 359252 24 100.0 42 CGATAACGCG ........................ ATTTTTTATTCACCTACCGATTTGTGACGAAACGAAACGGAA 359318 24 100.0 42 CGAAACGGAA ........................ TTAATATTTTTTTTTGGCAAGCCTATTTTTTCTCAACATTTT 359384 24 100.0 43 TCAACATTTT ........................ CTAACTTTTTTTTGATATACTCTAATTTCTTACTCATTCTTTT 359451 24 100.0 39 TCATTCTTTT ........................ ATTTTTTTAAAGAGGCCACTTTTTATTCCTAGTCTGAAA 359514 24 100.0 43 TAGTCTGAAA ........................ CATTTAGCCTTAACTCAAACTCTTGCATACCCGAATCCTCAAA 359581 24 100.0 40 AATCCTCAAA ........................ ATGGCACTGGGGTCGTCAAAAAGCACTACGTCATAACGTT 359645 24 100.0 42 TCATAACGTT ........................ CTCCCTCTCTCTGTCTATCCTAACTTTTGAACTTACTTTCTC 359711 24 100.0 42 TTACTTTCTC ........................ AGTGATTATTTTAGAATATGTCCCGCCATACCAATAGAAAGT 359777 24 100.0 41 AATAGAAAGT ........................ GTATTGCTCATTATTGATTTGATTAACGACTTATCTAACTG 359842 24 100.0 39 TATCTAACTG ........................ AATTGATGAAATATTCTTCTATCCAATGTCGTTTAATGA 359905 24 100.0 41 CGTTTAATGA ........................ TTCTCCTTTCTCCTCTTTCCATTTCCCGATAAGTATTATTA 359970 24 100.0 36 AGTATTATTA ........................ GTGATAGGGTTAAAAATAAGGGATAAACACATAGGA 360030 24 100.0 40 ACACATAGGA ........................ GATCTTGACCGGGTTTGACCTATGGAAACAGCAATAATAG 360094 24 100.0 41 GCAATAATAG ........................ TGTCTAGCTAATTGTAAATGATAATTAATAACTTTTGGATA 360159 24 100.0 41 CTTTTGGATA ........................ AATGACGATTTCGTTCTCAACGTTGACGCAAAAGACGGCGA 360224 24 100.0 42 AAGACGGCGA ........................ AAATGTCCTCAAAAACAACGTGATAGATCCTTACGAGACAGA 360290 24 100.0 40 ACGAGACAGA ........................ GGTCTTGCTCTCATGAAGACCACTGCCTCACCAACTGATA 360354 24 100.0 43 CCAACTGATA ........................ CACTCTTTCTCCTATTGCTATTTTTCCCTCTTCATCATTTTCT 360421 24 100.0 42 ATCATTTTCT ........................ GGGAATCATAGATTAAGATAGAGGGTGGAAATAAATGTCCCA 360487 24 100.0 36 AAATGTCCCA ........................ ACTTTGACTTGTTTTTGCATCTTTTTATCCCCAATA 360547 24 100.0 41 ATCCCCAATA ........................ TTTCGCTTAAGAATAACGCCTTTTCTACTTTCTCTTTGTTC 360612 24 100.0 38 CTCTTTGTTC ........................ TTGGAATTACGTAAAATTTCTAAATTATTCTTACGTAA 360674 24 100.0 43 TCTTACGTAA ........................ TTTTTATTATTATCCTTAAGTTATATCCCTATCAATGATTTTT 360741 24 100.0 45 AATGATTTTT ........................ ATCATAAAAGAATGGCAAAAGTACAGTACTCAACAATTAACAGAG 360810 24 95.8 41 ATTAACAGAG .........G.............. ACGATATAAACATGCCTAAAGAAGTCTTCCAGATCAAGTTT 360875 24 100.0 40 GATCAAGTTT ........................ CTCTGATAGCTGCATAAGTATATAAGAAATAAGAAATTCT 360939 24 100.0 AAGAAATTCT ........................ AAAATTTGTG ========== ====== ====== ====== ========== ======================== 111 24 40 GCTAATCTACTATAGAATTGAAAG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.83%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [353,162] Score: 0.18/0.18 # # Final direction: F [5.09,0 Confidence: HIGH] >NC_021058 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 573744 24 100.0 35 ATGTAAAAAC ........................ ATTCTCAATATTTTAGTGCCAATTTGCCATATTAT 573803 24 100.0 36 GCCATATTAT ........................ AGTATGAATGGCAGACGAAAAGTTGTATCGTAAAAA 573863 24 100.0 35 ATCGTAAAAA ........................ GCGTTAGGCGCAATTAATGCAGAATATAAAGAAAT 573922 24 100.0 35 ATAAAGAAAT ........................ AAAAGTTAAGTAAATTTGTAGATCAGTTTTTTGAA 573981 24 100.0 36 GTTTTTTGAA ........................ TCCAGGTGAGGAAGTTGGTGGAAGAGAATAAACAGC 574041 24 100.0 36 AATAAACAGC ........................ ATTGGAGAAGTAAACGATAGTTTCATATTGCTCTAT 574101 24 100.0 37 ATTGCTCTAT ........................ ATTTCTTTATAATCACTTTCACTTAGCCTCAAGGGCT 574162 24 100.0 36 CTCAAGGGCT ........................ ACTGCTTGACTATTTACAGAACGCCAGGGTCTCCTT 574222 24 100.0 35 GGGTCTCCTT ........................ ATATTAAAAGAACTTATGGAATTTTACGGAATAAA 574281 24 100.0 34 ACGGAATAAA ........................ AAATTGATACATTTGTTTGGGTGAGGTAGCATGA 574339 24 100.0 37 GGTAGCATGA ........................ AAAGTGGGGATAAAAAATGAATGTAAGTCAAAAAGAA 574400 24 100.0 33 TCAAAAAGAA ........................ AAATATATTGTTTGATCTTCCCGATAATACAGC 574457 24 100.0 37 ATAATACAGC ........................ ATAAATGAAGTTAGAGGAATTTATTATGTTCCACAAA 574518 24 100.0 34 GTTCCACAAA ........................ ATATAAGCAGCTTTCATTATGATATTTTTGTACC 574576 24 100.0 37 TTTTTGTACC ........................ AGCCGTTTCAAGACCAGTGATTATAAGGTATGTGATA 574637 24 100.0 35 GTATGTGATA ........................ ATCAGCAACGCATATACATATGCCAGCCTATCAGC 574696 24 100.0 35 GCCTATCAGC ........................ AATTATTAAAGTCACGGATACAATAGAATTGGTGG 574755 24 100.0 37 GAATTGGTGG ........................ CTTCATGATATCGCAATAACTAAGGACGGAAAAATAT 574816 24 100.0 35 GGAAAAATAT ........................ GCGAAAGGCGATTGTGGAATGTTATCAGCTAAAAT 574875 24 100.0 34 CAGCTAAAAT ........................ CTGTCTTTTGACATCGTCCGCACCTGCGAGAATC 574933 24 100.0 34 TGCGAGAATC ........................ TTAGAATACATAATAAAAACATTTCAAATAGCAA 574991 24 100.0 34 CAAATAGCAA ........................ CTCTACTATTGTATCCAAACTCTGCTACAAAATG 575049 24 100.0 35 CTACAAAATG ........................ TACGCATACGGGAGAATCATGAGGCTTGTCGAGAA 575108 24 100.0 35 TTGTCGAGAA ........................ GCGATTCTAACTTTACTGCAGTACCTAAATTAATA 575167 24 100.0 33 TAAATTAATA ........................ GAGTACTGTAGTAGCGGTCGAATCAATAAAGGA 575224 24 100.0 34 CAATAAAGGA ........................ TTACTTACTAAATGGAGCGAATAATCAGGTCAAT 575282 24 100.0 35 TCAGGTCAAT ........................ CTACATACACAATCAATTACGCACCTAGGGCAAAT 575341 24 100.0 37 TAGGGCAAAT ........................ AAATAGATGTCTGATGAAATAAATAAAGCATATCTAA 575402 24 100.0 33 GCATATCTAA ........................ TGGAAATTTTGTTGAGCAACTGGCCCGACATTT 575459 24 100.0 CCCGACATTT ........................ TGATCCTTCT ========== ====== ====== ====== ========== ======================== 30 24 35 GTTTTAGTTTCTTTGTGTTGTTAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.83%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [189,2438] Score: 0.18/0.18 # # Final direction: R [0,0.18 Confidence: MEDIUM] >NC_021058 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 597389 24 100.0 37 AGAAGGATCA ........................ AAAAAGTCATTCTTTTTTTTATAATCCAAGAGATAAT 597450 24 100.0 38 AAGAGATAAT ........................ ATAATCAGAAATCATAAAATAGAGAAAAATGCAAACTC 597512 24 100.0 35 ATGCAAACTC ........................ TGGATTACCATTTTTCCACCTCTATTCTCTATAAA 597571 24 100.0 36 TCTCTATAAA ........................ TAGAGTTAAGGTCGCATGACAATAACATAATAATTG 597631 24 100.0 35 ATAATAATTG ........................ AACGTTAATAGAGACACTTGGGTCTTATTTTCACA 597690 24 100.0 39 TATTTTCACA ........................ AAAATTTAGAAAGTAGGAGAAAAGAACAATCTATAGAGT 597753 24 100.0 33 TCTATAGAGT ........................ ACTGGAGCTTTTGCAATAACTTTTCCATAAAAT 597810 24 100.0 37 TCCATAAAAT ........................ ATGAATTTTATGAGTTGACAAAAGATAAAAAATTTTT 597871 24 100.0 35 AAAAATTTTT ........................ TTAAAATACTCATCAAATGTAAGGTATTTTATAAC 597930 24 100.0 37 ATTTTATAAC ........................ TAAAAGTTCCGTGTTTTTGCAGCAGCGTGAAATTTTA 597991 24 100.0 36 TGAAATTTTA ........................ AATCTCTCTTTTTTGACCATTTTCATCATAATAAAT 598051 24 100.0 35 CATAATAAAT ........................ CAACAATATATTTTGAATGGAGCTAAGGTAATCGC 598110 24 100.0 36 AGGTAATCGC ........................ TAATGTAAATGCCAGCTTTGTTTCACCAGATACCTT 598170 24 100.0 34 CAGATACCTT ........................ TTATTTGTCAGTAGCAAGCGGAAGTAAGGCAAAG 598228 24 100.0 36 TAAGGCAAAG ........................ ACAAAAAGGAGTTACGTTAGCAAAAGAAGACTAGAA 598288 24 100.0 35 AAGACTAGAA ........................ ATGTCTATGCTTGGGCTACTGGAAAATGCACAGTT 598347 24 100.0 34 ATGCACAGTT ........................ ATAGTGATTGTGGCTTCATCAGAAAGATTAAGAT 598405 24 100.0 36 AGATTAAGAT ........................ TTCGCTATTATTAGCGTTATACCTAGCGAAAAAACT 598465 24 100.0 36 CGAAAAAACT ........................ TTTTTTGTTTCTTGTTTTGTCATTTATTTTTACCCC 598525 24 100.0 36 TTTTTACCCC ........................ AGCCCTCACCAGAGTGATGATTAGCGAAAGAACCAT 598585 24 100.0 36 AAAGAACCAT ........................ TCTTCGTCAAAAAAATAATATGTTCTTATTTGATCT 598645 24 100.0 38 TATTTGATCT ........................ AATTGGTGGATTAATCAACCTAAGTCGCAAAATCAATC 598707 24 100.0 35 AAAATCAATC ........................ ACCGTATAGTGTCACTATTTCCCCATAGTCGTCAT 598766 24 100.0 36 TAGTCGTCAT ........................ TATGCTTTTGAATGTCTGTTCTTCTGAATTCGATAT 598826 24 100.0 37 AATTCGATAT ........................ AAAAGAAAAACTTAAAAAGAAGAAGAAAATAAAAAAG 598887 24 100.0 35 AATAAAAAAG ........................ TAATTTTTTCTGCTATGGCGGAACTCATGCATACA 598946 24 100.0 35 CATGCATACA ........................ TCTTCTTTCATACAAAGGAATTTTCTGTTCTTCTT 599005 24 100.0 34 TGTTCTTCTT ........................ AACACCCTAGGTTCCCTTAGCACCTCAGGTTGTT 599063 24 100.0 38 TCAGGTTGTT ........................ AAAAAAGATTAACCTGGAAACAATTCCGCAAGAACCTT 599125 24 100.0 CAAGAACCTT ........................ TATGTTCTTT ========== ====== ====== ====== ========== ======================== 30 24 35 GTAACAACACAAAGAAACTAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.83%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [781,3] Score: 0.18/0.18 # # Final direction: F [0.45,0 Confidence: MEDIUM] >NC_021058 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================== ====== 584662 24 100.0 35 TATATACTAA ........................ ATACACAAAATTCTATTGAAATTAGCAGAAAGGAA 584721 24 100.0 38 CAGAAAGGAA ........................ AAGCAGATATTCCTGAAAGTATGTATATAAAGTTAGAA 584783 24 100.0 36 AAAGTTAGAA ........................ TTTCTATTTTTCAAATTTAAAACCATATCTATTTAT 584843 24 100.0 35 ATCTATTTAT ........................ ATCGAGTTGAGATGAAAATATTTCCAACAGGTTAT 584902 24 100.0 34 AACAGGTTAT ........................ TGAAAAGGATGCAAAAAAATATCAACCATATGCA 584960 24 100.0 35 ACCATATGCA ........................ TTGACTTTCATTTATTTGGGCTTTCATTTTTTATT 585019 24 100.0 34 ATTTTTTATT ........................ ATATACTGATATTAGCATTGAGGTCGAACAAGGT 585077 24 100.0 35 CGAACAAGGT ........................ CCTGAACTGTTCTGGCGTTCCTTGGCGTAAATTTA 585136 24 100.0 36 CGTAAATTTA ........................ TAGGAGTTGAAGTAGCAGAAACTGATAAAATTGCAA 585196 24 100.0 35 AAAATTGCAA ........................ CGAATGGTGGGAATATGAAGACCAATATTTAAAAT 585255 24 100.0 35 TATTTAAAAT ........................ AAGGGGCAAGTAACCAGGTCAACAATTTCATTAAT 585314 24 100.0 35 TTTCATTAAT ........................ AAGGGAAGTTCATAAGACGAATGGAAGACTGGGCT 585373 24 100.0 36 AGACTGGGCT ........................ ATTAGAAGCGCCTATCGCCATCAGCAGATTTGTTTT 585433 24 100.0 35 GATTTGTTTT ........................ AATCGACATTAATAGGATAAGGATGACTAAAAAGT 585492 24 100.0 36 ACTAAAAAGT ........................ GGGGTTCAGAAGCGGTAGCTGGACTTTTCCATTCGA 585552 24 100.0 35 TTCCATTCGA ........................ AAACTTAGCTTGCCATTTCGCGTACCTTTGCGAAT 585611 24 100.0 35 CTTTGCGAAT ........................ TGAATAACTGTCAATAATTGAAAGAACTGCTACAA 585670 24 100.0 35 ACTGCTACAA ........................ TACAAATTAGTTTATCGACAGTTCCATCTCCACTT 585729 24 100.0 37 ATCTCCACTT ........................ TTTGTTGTCGGAGACGTAAGGATCGACGGAACACTTT 585790 24 100.0 36 GGAACACTTT ........................ TTTTGCAAATTATAGTTATGGACAATTATTATTTAT 585850 24 100.0 36 TATTATTTAT ........................ AGAACAAAAGAAAAAATCAAATTTGAATACAGAATT 585910 24 100.0 36 ATACAGAATT ........................ CCCACCCCACCCCCCCACCCCCAATTTTGCCTTGGA 585970 24 100.0 36 TTGCCTTGGA ........................ TTTAATATCAACGTGCCCCTTTGGCAAATCACATTA 586030 24 100.0 35 AATCACATTA ........................ TTTTCAGTTCTATAACAATATTTCTTCTTACTGAA 586089 24 100.0 33 TCTTACTGAA ........................ ATGTTTTTATAATGAATTATATGATTTTTAATT 586146 24 100.0 ATTTTTAATT ........................ TGATCCTTCT ========== ====== ====== ====== ========== ======================== 26 24 35 GTTTTAGTTTCTTTGTGTTGTTAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.83%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [80.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [127,773] Score: 0.18/0.18 # # Final direction: F [0.27,0.18 Confidence: LOW] >NC_021059 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================== ====== 1140954 19 100.0 37 NNNNNNNNNN ................... GAATTTCAAAAAGAAATTCTACAGACAATGCAAGTTG 1141010 19 100.0 37 NNNNNNNNNN ..GT...........C... AGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTT 1141066 19 100.0 37 NNNNNNNNNN ..................T GAAATTGGATTCCCAATTTCTACAGACAATGCAAGTT 1141122 19 100.0 1 NNNNNNNNNN ................... NNNNNNNNNN ========== ====== ====== ====== ========== =================== 4 19 37 GGCGGGGCCCCAACATAGA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,1] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [157,216] Score: 0/0.18 # # Final direction: F [0.64,0.41 Confidence: LOW] >NC_021059 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1863501 37 100.0 22 NNNNNNNNNN ..................................... AGCTGGCCAATAGTCAGCTTTC 1863560 37 100.0 21 NNNNNNNNNN ..................................... GAATTTCGAAAAGAAATTCTA 1863618 37 100.0 19 NNNNNNNNNN C.G.CAA..........C.GGGCCC.AA..CAGA..C TGGCCAATAGTCAGCTTTC 1863674 37 100.0 1 NNNNNNNNNN ..................................... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 4 37 20 AATAATGTGCAAGTTGGGGTAAGGGCCCCAACACAGA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:51.35%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-13.70,-11.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [50.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [352,305] Score: 0/0.18 # # Final direction: F [0.78,0.27 Confidence: MEDIUM] >NC_021059 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 2380814 23 100.0 31 NNNNNNNNNN AT..C.TTGAT.C.......... TTGTCTGTAGAATTTCTTTTGAAATTCTCTA 2380868 23 100.0 33 NNNNNNNNNN ....................... CATTATTGTATGCTGACTTTTCGTCACCTTCTG 2380924 23 100.0 32 NNNNNNNNNN ....................... TTGTCTGTAGAATTTCTTTTTGAAATTCTCTA 2380979 23 100.0 33 NNNNNNNNNN ....................... CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG 2381035 23 100.0 1 NNNNNNNNNN .....................T. NNNNNNNNNN ========== ====== ====== ====== ========== ======================= 5 23 32 TGTTGGGGCCCCGCCAACTTGCA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [3,5] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.90,-2.30] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [303,143] Score: 0.18/0.18 # # Final direction: R [0.55,0.78 Confidence: LOW] >NC_021059 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 922925 30 100.0 26 NNNNNNNNNN .............................. CGGGGCCCCAACACAGAGGCTGGCGG 922981 30 100.0 28 NNNNNNNNNN .............................. GGTGGAGCCCCGACACAGAGAAATTAGC 923039 30 100.0 26 NNNNNNNNNN TCCTCA.TT.CTAC.G.CAA.......... CGGGGCCCCAACACAGAAGCTGGCGA 923095 30 100.0 53 NNNNNNNNNN .............................. GGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAA 923178 30 100.0 1 NNNNNNNNNN ....A....AGTAGGATAAT.T...T.... NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 5 30 33 AAAGTCAGCTTACAATAGTGTGCAAGTTGG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:60.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-2.50,-1.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [152,71] Score: 0.18/0.18 # # Final direction: F [0.96,0.27 Confidence: MEDIUM] >NC_021064 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2525396 29 100.0 32 NNNNNNNNNN ............................. ATCTCTGCAAGCCGATTTGTTCCAGCAGTAAT 2525457 29 100.0 32 NNNNNNNNNN G............................ ATGAGCTGAACAAACTCACCGCGCGTCGCGGC 2525518 29 100.0 32 NNNNNNNNNN ............................. TCAGTGTGCTCGGAAATTGACTTCATACGGTA 2525579 29 100.0 32 NNNNNNNNNN A............................ TCATTCTAAAGGGCTGTTGAAAGACCCGAATT 2525640 29 100.0 33 NNNNNNNNNN A............................ GAGCGTACCCGGCGTGGGTTTAAGGTGCTGACA 2525702 29 100.0 32 NNNNNNNNNN ............................. CGGCTCCACTGGCCCGGATTGTTGGGCGTGAA 2525763 29 100.0 32 NNNNNNNNNN ............................. TGCGTAGCGCCATTTACACCATGTATCTCGCT 2525824 29 100.0 32 NNNNNNNNNN ............................. CGTCGATTGTCGGATCCAAAGGAAACGGATTT 2525885 29 100.0 32 NNNNNNNNNN ............................. TGTTCCGGTGGAGGCTCGCCAGGCTGCGCAAC 2525946 29 100.0 32 NNNNNNNNNN ............................. GGAAGACTGTTCCCATGGACAATGCGGCACAG 2526007 29 100.0 32 NNNNNNNNNN ............................. ATCTGGGCCGAAAACGACGAATTGCGCGACAG 2526068 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 12 29 32 CGGCTCACCCCCGCGTAGGCGGGGAAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-13.30,-12.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [31.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [348,44] Score: 0.18/0.18 # # Final direction: F [1.19,0.41 Confidence: MEDIUM] >NC_021064 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 53 28 100.0 34 CCCGACCATC ............................ GGCGTGGGTGGATTCAGGTCACGTGGAAGGATAA 115 28 100.0 33 GGAAGGATAA ............................ ACCGATTCGATGTGGGAGAATCCTCTAGCCGAA 176 28 100.0 33 TCTAGCCGAA ............................ TTACGAATGGCTAGAGAATAATTTTCGTTAGCC 237 28 100.0 33 TTCGTTAGCC ............................ ATATGGGGAATAGGGGTCCCCGTGCTATGATAA 298 28 100.0 33 GCTATGATAA ............................ CTTCGGGTGCGATTCCATCCGTGGCTTCCACTC 359 28 100.0 GCTTCCACTC ............................ ACCAACCGAC ========== ====== ====== ====== ========== ============================ 6 28 33 GGCTCACCCCCGCGTAGGCGGGGAAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-13.30,-12.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [3.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [54,56] Score: 0/0.18 # # Final direction: F [0.74,0.27 Confidence: MEDIUM] >NC_021081 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =================================== ====== 1445062 35 100.0 37 GCGGGCTGGC ................................... AGGAGGAAGGAGATATGAAGAGCAAACTGCGTTATCT 1445134 35 100.0 35 TGCGTTATCT ................................... GGAACCAAGGGCACGTGCAAACGCGTTCACGCCAC 1445204 35 100.0 41 TTCACGCCAC ................................... TCGTGCCATAGTGTAATATTCGCCTGGCGCTGCTAACCATC 1445280 35 100.0 41 GCTAACCATC ................................... CCCAAAAGGTCGCCAAAGTACACAGGCTTCACCTGCAATTC 1445356 35 100.0 40 CCTGCAATTC ................................... TAGTGCAAATCGAAATCAACAAGTTGGGCGTGATGGATGC 1445431 35 100.0 TGATGGATGC ................................... AGCATACCCCG ========== ====== ====== ====== ========== =================================== 6 35 38 GTTTCAATCCCCTTACGGGGCTTTTTGTTTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:54.29%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-7.10,-8.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [165,414] Score: 0.18/0.18 # # Final direction: R [0,5.32 Confidence: HIGH] >NC_021081 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 1760272 37 94.6 37 AGGAATCATG .....................A...-........... CCCCAGGGAGAGGCCTGGTTTAAGACCAAGCCAGGTC 1760346 37 97.3 35 AAGCCAGGTC ......G.............................. GGGATTTTCGACATTGCTGTAGTGAGCGCCTCTGT 1760418 37 100.0 36 GCGCCTCTGT ..................................... GGATGCTGATGCGGTCGATAAATTTCTGAAGTCCAG 1760491 37 100.0 35 TGAAGTCCAG ..................................... CGGTGGTGGCCGGGGTGCGCAGCGCAAAAGACCAT 1760563 37 100.0 35 AAAAGACCAT ..................................... GACTTTTCCCACGTGCACAACACAGGCCTCATTGA 1760635 37 100.0 35 GCCTCATTGA ..................................... GGCACTACCACGGCCATTAGCCGTGTAGAAGGCAG 1760707 37 100.0 35 TAGAAGGCAG ..................................... GAAATGATTCGCAAAGAGGCTCTCTTGATTCTTTG 1760779 37 100.0 36 TGATTCTTTG ..................................... CTCATCTGCCGCAATCTCCTGCGGCGTGCGGAAATC 1760852 37 100.0 35 TGCGGAAATC ..................................... GGCCCTGGGGGTGGGGCTTTCTTCCCGGGGGGAAG 1760924 37 100.0 35 CGGGGGGAAG ..................................... CTCGTACTTTTTAGCCAGGCCATTGCCTGCGGAAA 1760996 37 100.0 34 CCTGCGGAAA ..................................... CGAGGGCCGTCAATTTGTAGACCTTCCATGCCGG 1761067 37 100.0 36 TCCATGCCGG ..................................... GATGAGGGCCCCGTGTGGGAGAACATCCGCACAAAG 1761140 37 100.0 34 CCGCACAAAG ..................................... GCGGGTACGGGATGCCGAGCAGCTCGTGCTCCGG 1761211 37 100.0 36 CGTGCTCCGG ..................................... GCCGCCAGCCGCAGCGCCGCCTCGAAGTCGGGTTGC 1761284 37 100.0 35 GTCGGGTTGC ..................................... GCTATGAGGTTCCTCCAACCGCTACGCTAACTCGT 1761356 37 100.0 36 GCTAACTCGT ..................................... CGGGGCCTTTTGGGCCCAGCGCTGGTGTCAGAGTAG 1761429 37 100.0 34 GTCAGAGTAG ..................................... GCACCTCAGCGGGAAGCTGAACTCCCTCGATGCC 1761500 37 100.0 35 CCTCGATGCC ..................................... GATGGCGGCGTAATAGTGAGTTACGCTGTCGTGTA 1761572 37 100.0 37 CTGTCGTGTA ..................................... GCCTGCAAGCCCAGCCGCCCTAGGCAGCCCAGCCTGC 1761646 37 100.0 35 CCCAGCCTGC ..................................... AATCTGAGGGTTGGGGCGACGGCAGTGATGTGGCC 1761718 37 100.0 35 TGATGTGGCC ..................................... CAGCGACCCGGGTCGCCGGCTCTCTTGAGCTTCAC 1761790 37 100.0 36 TGAGCTTCAC ..................................... ACCCGAGTGCGCCTGGCAATCGCCAAGCGCGCCCGG 1761863 37 100.0 36 GCGCGCCCGG ..................................... CCGGGGTCACAATCGGGCGAGCGCGTCCGGCTGCGC 1761936 37 100.0 36 CCGGCTGCGC ..................................... GTGCAGGCCCGCTACCTGCACCTTAGCGGGGCTCTC 1762009 37 100.0 36 CGGGGCTCTC ..................................... CTTCCAGGTGGTACAGGCCCGGGACGGGCGGACAAA 1762082 37 100.0 35 GGCGGACAAA ..................................... ATTCCTGTTATTAGTTCTCCAATGTCTTTCTATAC 1762154 37 100.0 36 CTTTCTATAC ..................................... GTGCTTGCGGCGGTGCGCAAGGGTCACCAGTTCATC 1762227 37 100.0 35 CCAGTTCATC ..................................... GCTCGCTGCCAGCCCGCCGCGTGTGTGTGCATGCA 1762299 37 100.0 34 TGTGCATGCA ..................................... GATTGACGAAACCTGGGCGATTGTCAATATTGAC 1762370 37 100.0 35 CAATATTGAC ..................................... AGTGGATAGCATTCACTATCCCCTCCCGGATTTGG 1762442 37 100.0 36 CCGGATTTGG ..................................... ACGCTGTACAACTCGGGAGCTAATCGAGCACAAATA 1762515 37 100.0 34 AGCACAAATA ..................................... ACCGGGGCCAAGAAAGGAGATGCCATGAGTATAG 1762586 37 100.0 34 ATGAGTATAG ..................................... TGCCGACGTATCTGTGCAGCTTTAGCCCTCCTCA 1762657 37 100.0 37 GCCCTCCTCA ..................................... CCCCGCGAGACTGGAACTCCAGCACCCAGAAGTATTT 1762731 37 100.0 AGAAGTATTT ..................................... GCCCTCATTC ========== ====== ====== ====== ========== ===================================== 35 37 35 GTTTCAATCCTCACTCGAGCTTTTGCCCGAGTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [7,11] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.80,-12.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [43.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [3,210] Score: 0.18/0.18 # # Final direction: R [0.27,5.83 Confidence: HIGH] >NC_021081 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 1501133 29 100.0 31 AGAATCAAGT ............................. AAAGCACCCTGTCCTCAACGGACCGTTCAAC 1501193 29 100.0 33 ACCGTTCAAC ............................. GCCGATGCCGTGTCCCCCAGCACGGTCAGCAGC 1501255 29 100.0 33 GGTCAGCAGC ............................. AGCAAACGGGAAAAACGAAAAGAGCAGCGCCGC 1501317 29 96.6 32 GCAGCGCCGC ............................A GATCCGCCCCACTTATCAATCGGGGCGTCCCC 1501378 29 100.0 32 GGGCGTCCCC ............................. AATAGTGGCCACAGCCACAGTAGCCACCTGCA 1501439 29 96.6 32 GCCACCTGCA .....T....................... ACGTATACTGGACCTACAGGCTAGTGGAGCGG 1501500 29 100.0 31 AGTGGAGCGG ............................. GGCAGAGCGTCGTTGCACAGCCCAGCGTCGC 1501560 29 100.0 33 CCAGCGTCGC ............................. AAGTCCCTGAGCCGTTCTTGATTGTCCCGATGA 1501622 29 100.0 32 GTCCCGATGA ............................. GTGCCGGATCCGATGTGCTGGGTGTAGAGCTG 1501683 29 100.0 32 TGTAGAGCTG ............................. AGCGCCTGTACGGCAGCCAGGTGCCCGGCGAC 1501744 29 100.0 32 GCCCGGCGAC ............................. GAAATCCTGTAAATATCCCCTGACTCGCTAAC 1501805 29 100.0 32 ACTCGCTAAC ............................. AGCGTACCCTATCGGCACCGAATGTTTGCGCA 1501866 29 100.0 34 TGTTTGCGCA ............................. AGGTGACGCATGAGAGAAATACCCATCCGCGTCC 1501929 29 100.0 32 ATCCGCGTCC ............................. GAAATCCTGTAAATATCCCCTGACTCGCTAAC 1501990 29 100.0 32 ACTCGCTAAC ............................. AGCGTACCCTATCGGCACCGAATGTTTGCGCA 1502051 29 100.0 34 TGTTTGCGCA ............................. AGGTGACGCATGAGAGAAATACCCATCCGCGTCC 1502114 29 100.0 32 ATCCGCGTCC ............................. GCGGCCTGCCCCTGGGCCGCCCCCGAGCCTGA 1502175 29 100.0 32 CCGAGCCTGA ............................. CTCTTGTAGCGCGTTTTGAGCCGCCCGGTACA 1502236 29 100.0 32 GCCCGGTACA ............................. AGAAAGCGCAGCACCGGCTTGGGCTCGTCGGA 1502297 29 100.0 32 GCTCGTCGGA ............................. AACTGCACGAGCGCGAAATGCTCGGGCAGGAC 1502358 29 100.0 31 CGGGCAGGAC ............................. CTCCCTCAGGCCCTCGACTGGTACCCGGTGC 1502418 29 100.0 32 TACCCGGTGC ............................. CCCTGGTCGGGCAGGGAGCCCCGCCCTACAAC 1502479 29 100.0 33 GCCCTACAAC ............................. GGCCATGAGATGCTCGAGCGGCCATGCGCCAGC 1502541 29 100.0 32 ATGCGCCAGC ............................. TCTTAAGCCTGATCTTCGGCCAGGAGTACGCC 1502602 29 100.0 33 GGAGTACGCC ............................. TCCTGTAGCCCTACGTCCAGACCGAGGGTCTTT 1502664 29 100.0 33 GAGGGTCTTT ............................. GTGGACATCGGCTTCAGCAACCCGGCCCTCGAG 1502726 29 100.0 32 GGCCCTCGAG ............................. GATGGGGCGAAGTCCCGATCGAGAAGTCGCCC 1502787 29 100.0 33 GAAGTCGCCC ............................. CTCTGCGCCGCCTCGGGACTTGTGGGGGTTGCC 1502849 29 100.0 32 GGGGGTTGCC ............................. ACGGCCTGACCCTGACCCTCTCCATGCGCGAG 1502910 29 100.0 31 CATGCGCGAG ............................. CATGAATATCCGGATTCCCACTTTAGCAGGG 1502970 29 100.0 33 TTTAGCAGGG ............................. GTCATTCTGGCGCTGGGCCTGGACAGGGCCCTC 1503032 29 100.0 32 CAGGGCCCTC ............................. TAGCCATCGGCGCGGAGCCCATCGCGAAATGC 1503093 29 100.0 33 CGCGAAATGC ............................. GTGCCACCGCAGTACACGTCCAAGACGTGCTGC 1503155 29 96.6 32 GACGTGCTGC ............................C TGCGCCCGGTGCTGAGCCGGTTGGCCGTGCGC 1503216 29 100.0 32 GGCCGTGCGC ............................. CGCAGGGCATCGGCCCAATCGGCGGGGCCCCA 1503277 29 100.0 33 CGGGGCCCCA ............................. GAGGGAACTGGCATGACCTGGCGGGTAGCGCGC 1503339 29 100.0 32 GGTAGCGCGC ............................. GGTCTCAGACGTACCACCAGGGGGGTAGAGGA 1503400 29 100.0 32 GGGTAGAGGA ............................. CTGAGGATGCCGCCACACGGTATCAGGCCACA 1503461 29 100.0 32 TCAGGCCACA ............................. CCGCGCAGGTTGTGCAAGGCTTGCTTGGTGAA 1503522 29 100.0 32 GCTTGGTGAA ............................. TGAAGCGTCCTTTTTTGTCACGCTTGGGCAGT 1503583 29 100.0 32 CTTGGGCAGT ............................. TGCTGAACCGGATGACCGGGCCCGCCTCGAGC 1503644 29 100.0 33 CGCCTCGAGC ............................. TACTCGAGCACGTCTAGCCCCCTAGATGATGCC 1503706 29 100.0 32 AGATGATGCC ............................. TAGGGCGGCCCCTTCGTCCCCCAGCGCTCGTA 1503767 29 100.0 33 AGCGCTCGTA ............................. GAAAACGATCACACCAAGGACATGGAGCGCTAC 1503829 29 100.0 33 GGAGCGCTAC ............................. GTCAGGTAGGGAAGCCCGTCTTTTGCCCTCGGC 1503891 29 100.0 33 TGCCCTCGGC ............................. TGGACATTACACAATGGCGCGCTACCATGTAAT 1503953 29 100.0 31 ACCATGTAAT ............................. GGCCACCTGCCGTTCAAAGATGGTGGCCGTC 1504013 29 100.0 33 GGTGGCCGTC ............................. TAGGGTTCAATCCCCCTTCCCCCGGGCCCACGC 1504075 29 100.0 32 GGGCCCACGC ............................. GTGGGCTCACTTCCCTTTTCCCATGTCGCCCC 1504136 29 100.0 32 ATGTCGCCCC ............................. GTCAAGCTGCCGCCTGAGCTTGTGCGTCGGGT 1504197 29 100.0 32 TGCGTCGGGT ............................. CTTTTCGATGCTGCAATCGCCGCTGCTGGCCG 1504258 29 100.0 32 CTGCTGGCCG ............................. ACACTCGGTGACGCCGAAGTGCGTTTCGTTGT 1504319 29 100.0 32 GTTTCGTTGT ............................. GTAGGCCTGCATATAGCCGATGGCGCGGTGGA 1504380 29 100.0 30 GCGCGGTGGA ............................. ACATTGTGTCCATACTCCCGGCCACCAGTG 1504439 29 100.0 32 GCCACCAGTG ............................. TCCCTGGTTTTTGCTTTCTCCCCAAGAGACTC 1504500 29 100.0 32 CAAGAGACTC ............................. CCCCACCCCCGCGATTCGGCGAACGATGTATC 1504561 29 100.0 31 ACGATGTATC ............................. AGCAGAGGCTGCCCGCCCAGGCCTGGGGGCC 1504621 29 100.0 33 CCTGGGGGCC ............................. CTTTGAGCGCAACCAGGCTTTGGCCTTTTCCCC 1504683 29 100.0 32 CCTTTTCCCC ............................. ATGGCGTAGTCGTATAGCGGCCATGCGTTGGT 1504744 29 100.0 32 ATGCGTTGGT ............................. ACATGGTCGACGCAGCGGCATACGCATTTCAT 1504805 29 100.0 32 CGCATTTCAT ............................. ACCCGCACCTGGACGGTGCGGGTCAACCACCG 1504866 29 100.0 32 TCAACCACCG ............................. CTCAGCTTGGGGGTAACCGCACCCAGCCCCAG 1504927 29 100.0 33 CCAGCCCCAG ............................. TATATGGCCTGCGACAACATCAATGCGGCAGTC 1504989 29 100.0 32 TGCGGCAGTC ............................. GGCAAGAAGCGGCCATGGAATGGGGCCCTGAA 1505050 29 100.0 32 GGGCCCTGAA ............................. GCGGCCATCGTGCGGCGCGCAAAATCCGAGGG 1505111 29 100.0 32 AATCCGAGGG ............................. GATTGCAAAGGCTTCTGTGGTGGAAGACAAGC 1505172 29 100.0 32 GAAGACAAGC ............................. ACAGATACTTCGTATCTGTCTCCTACACATGA 1505233 29 100.0 32 CTACACATGA ............................. GCACCCCGCAGATCACGGGAGCCATCCACAGT 1505294 29 100.0 32 CATCCACAGT ............................. ACCGATATTTGCTCAGCGTTTGAACAGTTCGA 1505355 29 100.0 32 AACAGTTCGA ............................. CTATGGGAGAAGGACAGAAGTTGGAACCACAT 1505416 29 100.0 32 GGAACCACAT ............................. GCGTGGGCACCAGAACAAAGCGGCCCGACTCC 1505477 29 100.0 32 GCCCGACTCC ............................. CGATGCCCCCGCACTGAGCGTGGACGACATCG 1505538 29 100.0 32 GACGACATCG ............................. TTCGATGGCAACTACTTTGAGACTGGGTTCTG 1505599 29 100.0 32 CTGGGTTCTG ............................. TTGAGCGCCCACCCCTGCTCGTTGCCCACCGC 1505660 29 96.6 TGCCCACCGC ...........................G. AAATGAAG ========== ====== ====== ====== ========== ============================= 75 29 32 GTATTCCCCGCACCCGCGGGGATGAACCG # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [2-1] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [22,20] Score: 0/0.18 # # Final direction: F [0.37,0 Confidence: MEDIUM] >NC_021081 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 2861183 28 100.0 47 AGGGCTCGCG ............................ TTGCTCAGCTTATGAATGAAAGCCTCATAACTTCCCCAAGCTCGCGC 2861258 28 100.0 46 AAGCTCGCGC ............................ ACTTCAACGAACTATGAGTTGGCCGTCAGTTAACCCAGGGCTCGCG 2861332 28 100.0 47 AGGGCTCGCG ............................ TTGCTCAGCTTATGAATGAAAGCCTCATAACTTCCCCAAGCTCGCGC 2861407 28 100.0 AAGCTCGCGC ............................ ACTTCAACGAACTATGAGTTGGCCGTCAGTTAACCCAGGGCT ========== ====== ====== ====== ========== ============================ 4 28 46 CCTACCGGCCTCGAGCGATAGACGAGGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [6,3] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.10,-1.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [80,132] Score: 0/0.18 # # Final direction: NA [0.37,0.37 Confidence: NA] >NC_021081 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3050801 37 100.0 35 GAATGAGGCT ..................................... AAACAAACTGCAATGTCCTGGATATCCCCTGCAAC 3050873 37 100.0 34 CCCCTGCAAC ..................................... GAGGCAGCAGTAGCTCAATATGCAGACACTCTCT 3050944 37 100.0 38 GACACTCTCT ..................................... TATACACTATATACATACCATTTACTTCTGCCGGCAAT 3051019 37 100.0 35 TGCCGGCAAT ..................................... CTACTCTGGCACTAGCGCTGGGCCCAAAAGGCCCC 3051091 37 100.0 38 AAAAGGCCCC ..................................... CAGCCAGCCGTTCACCGCTAACATCAATGTGCCCGCGC 3051166 37 100.0 34 GTGCCCGCGC ..................................... CTGCTGAGCAGCAGAGCGACAATTTTGAGCGCCA 3051237 37 100.0 34 TTGAGCGCCA ..................................... TATGCGTATAGCCCGCTGCTCGTAGAGCCTCTAT 3051308 37 100.0 35 GAGCCTCTAT ..................................... GATCGCCCGGGCAGTTTCCATGGCCTCGCCCGTGT 3051380 37 100.0 37 TCGCCCGTGT ..................................... CAACGTTACCTCACGCATTACGGGAAACAACGCGCAT 3051454 37 100.0 34 CAACGCGCAT ..................................... ACAAAGGCGAGCGCGTCCGTCCTCCGCAAGCCCC 3051525 37 100.0 36 CGCAAGCCCC ..................................... GCCGGCGTTGCGGCTCCCGAGGTAGCCGAGGAATTC 3051598 37 100.0 34 CGAGGAATTC ..................................... CTTGGTATCATCATAAAGATGCACCTATTATAAG 3051669 37 100.0 CTATTATAAG ..................................... GGGTTTCCACCAGTCTGAGTTGCCACAGCGCCGCCTC ========== ====== ====== ====== ========== ===================================== 13 37 35 GTTGCACTCGGGCGATAGCTCGAGTGAGGATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [9,8] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-12.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [203,199] Score: 0/0.18 # # Final direction: F [5.24,0 Confidence: HIGH] >NC_021081 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3031740 37 100.0 34 GTGCGGTGTA ..................................... CCTAGGAGATTTCCGCGTGTACATCAACTTTGAG 3031811 37 100.0 36 CAACTTTGAG ..................................... ACTGTTGGGTCTATGTTGCGGAAATTTTTTAGTGAA 3031884 37 100.0 35 TTTTAGTGAA ..................................... GTCAGGGGGCCGGCGCCCTCGCCGGCGCCCGCGAA 3031956 37 100.0 33 CGCCCGCGAA ..................................... GTACGCATGAAGGAACTCGTTCAAGCCCTCGCC 3032026 37 100.0 35 AGCCCTCGCC ..................................... GCGGTGGAGGCGGCGATTGCCGCCTGCACCTACGC 3032098 37 100.0 36 GCACCTACGC ..................................... GTGGGGTTGTTGCGGGCCATCACCCTCACGGGCGAG 3032171 37 100.0 37 CACGGGCGAG ..................................... CGTTGACTTCCAAACCGGCACTGCGTCCGTCATTGAG 3032245 37 100.0 34 CGTCATTGAG ..................................... CTATTCTATAGCCAGAAGGGAGGAATATATGAAG 3032316 37 100.0 37 ATATATGAAG ..................................... CTCTAGAGCGCTCTACGAGCGGGCCATCCACTCTCGA 3032390 37 100.0 34 CCACTCTCGA ..................................... GGGGGCCATCGGGGGGGTCGCGGGGGCCGTCTTC 3032461 37 100.0 35 GGCCGTCTTC ..................................... CTGAAGCGCTCGCCGGGGCCCTCCTCCTGGCCGCC 3032533 37 100.0 CCTGGCCGCC ..................................... AGCCTCATTC ========== ====== ====== ====== ========== ===================================== 12 37 35 GTTTCAATCCTCACTCGAGCTATCGCCCGAGTGCAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [8,9] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-8.10,-12.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [43.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [66,446] Score: 0.18/0.18 # # Final direction: R [0.27,5.42 Confidence: HIGH] >NC_021151 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 3074323 30 96.7 31 GAACGCCCCT .............................G CGAAATAGTGGGGAAAAACCCCTGGTTAACC 3074384 30 96.7 31 CTGGTTAACC .......................A...... AGGCCTTGATACCATCGCTCGCACCTCGTCA 3074445 30 100.0 31 CACCTCGTCA .............................. CTTTTGATTTTGCTGCGATGTTATAACCAGA 3074506 30 100.0 TATAACCAGA .............................. ATCCACATAT ========== ====== ====== ====== ========== ============================== 4 30 31 CGGTTTATCCCCGCTGGCGCGGGGAACACT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,6] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-14.20,-14.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [77,1300] Score: 0.18/0.18 # # Final direction: R [0,2.1 Confidence: HIGH] >NC_021151 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================ ====== 3074629 28 100.0 28 GAAACGGCTC ............................ GATCGAGTAACGTGCGCTGGAACGCGTC 3074685 28 50.0 33 GGAACGCGTC --------------.............. AATTAAAGCCGAGGGTGGCACCGCGCCTTATTC 3074746 28 100.0 34 CGCCTTATTC ............................ GCACCTCGAAACGGTTTTAAAACACTACCGTTTC 3074808 28 100.0 33 CTACCGTTTC ............................ TGGACCGATGGGGCCAACATCGCCGAACGTGGC 3074869 28 100.0 33 CGAACGTGGC ............................ GTTACGTTCGGTAAATGGAAAGCGGCGAATATC 3074930 28 100.0 33 GGCGAATATC ............................ CCAGAAAGTGCCGGTAGTGCCTGATGAACGACC 3074991 28 100.0 33 ATGAACGACC ............................ CGCGCCCACTTCCGTAAAATACAGATAATCCAC 3075052 28 100.0 33 GATAATCCAC ............................ GGTAATTTCTCATCTAACAGCCTGTACGCCTCA 3075113 28 100.0 33 GTACGCCTCA ............................ GAATCTAATGCAACAGATGAATAAACACGTAAC 3075174 28 100.0 33 AACACGTAAC ............................ TCTTTATCGTCAATGCGAAATTTTCCGCGACGC 3075235 28 100.0 33 TCCGCGACGC ............................ TCCCATTCACCAACAACAATATCGCCCTGCAAC 3075296 28 100.0 33 GCCCTGCAAC ............................ CGTTGCGTCAGGTTGATCCAGTGCGTCAGCGGC 3075357 28 100.0 33 CGTCAGCGGC ............................ TCTCGGTCTCGGTCTCGGTCTCGGTAGTGACGC 3075418 28 100.0 34 GTAGTGACGC ............................ GCAAAATAGCGATGAGCTGGCTACGCCCACTGGC 3075480 28 100.0 33 GCCCACTGGC ............................ GAGGGGATAGGAGTTACGATCCAGCCTGGTTGC 3075541 28 100.0 33 GCCTGGTTGC ............................ GTGGTTGCAGACCAATCAGCCCGCCAGCGGTTC 3075602 28 100.0 33 CCAGCGGTTC ............................ GTGGTTGCAGACCAATCAGCCCGCCAGCGGTTC 3075663 28 100.0 33 CCAGCGGTTC ............................ CAGCACGAAAAATTATTTACTGTCGTTGCTCAC 3075724 28 100.0 CGTTGCTCAC ............................ ACTAAAACTA ========== ====== ====== ====== ========== ============================ 19 28 32 GGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 96% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [40.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [383,84] Score: 0.18/0.18 # # Final direction: R [0.18,1.92 Confidence: HIGH] >NC_021151 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 3091869 29 100.0 32 NNNNNNNNNN AC.GC.....TT.T............... ATCTTCATATTGCGTGACGCTGCCGATGAACG 3091930 29 100.0 32 NNNNNNNNNN ............................. TCTTTATCAGCTAACCATTTCCAGAACTCGTC 3091991 29 100.0 32 NNNNNNNNNN ...........T................. TATAATATGAATTAATTTTTGCGCATAACCTG 3092052 29 100.0 32 NNNNNNNNNN ............................. TGCCCGTTCTGCCTCTTCGCACTCTCGATCAA 3092113 29 100.0 32 NNNNNNNNNN ............................. TGCGTAATGGGCTACCTGAACTTCACATATCC 3092174 29 100.0 32 NNNNNNNNNN ...............A............T ATTAAGCGCGCAAAGTTTGGGTTAATTGGACA 3092235 29 100.0 32 NNNNNNNNNN ............................. CGTATTCGTCACACAGCCCCGTCCAGAAATGA 3092296 29 100.0 32 NNNNNNNNNN ..................A.......... TAACGAACTGAATAAAATGTCAGAAAGTGACG 3092357 29 100.0 33 NNNNNNNNNN ...C......................... GCAGCTTAGCGACGAAATTAAAACCGAACTCAC 3092419 29 100.0 32 NNNNNNNNNN ............................. TGCCAGTGACTACAGAAGCGTCGCTATCGGGG 3092480 29 100.0 32 NNNNNNNNNN ............................. ACCGATAAACAACCGCATAGCCTCTTTCGTTT 3092541 29 100.0 32 NNNNNNNNNN ..A........T................. TGCTCAATAACGTCGTAAATAGCGTAAGCTGG 3092602 29 100.0 32 NNNNNNNNNN ............................. TATTTCGCCTTCGGCACTGACGTCACCGTCAA 3092663 29 100.0 32 NNNNNNNNNN ............................. GTCGCGTTCGTTGCCGGTATAGACCAGCGTCA 3092724 29 100.0 32 NNNNNNNNNN ............................. ATCGAATCGAAACCCCAGCCACAGAAATAATT 3092785 29 100.0 32 NNNNNNNNNN ............................. GCTCATGTCAAACGCCATCAGCGTTCCGGCAT 3092846 29 100.0 32 NNNNNNNNNN ...............A............. AATCGCCAGCCTCGGAAATATTCCATCCTCCG 3092907 29 100.0 32 NNNNNNNNNN ............................. AGGAACTAAACAGCCTGACCGTTGAGGATCTG 3092968 29 100.0 32 NNNNNNNNNN ............................. ACCGGACAAATCTTTTTTTTCCTGTTCCTGTT 3093029 29 100.0 32 NNNNNNNNNN ............................. GGGCACTATGAACGGATCGGCGCTGATGCCGG 3093090 29 100.0 32 NNNNNNNNNN ............................. GGTAAAGCCACACCATTTTTTATTGACCTCGC 3093151 29 100.0 32 NNNNNNNNNN ............................. GTGGTGGCCTCAAATAAATTCGAGCGCTGGAG 3093212 29 100.0 32 NNNNNNNNNN ............................. TCGACGTGGACGAGGAGTTACTCAACCGCTGC 3093273 29 100.0 32 NNNNNNNNNN ............................. AGCGCCACATGGCCCACCGGCACCACCCGATC 3093334 29 100.0 32 NNNNNNNNNN ............................. AAATGACCAAATCAGAAATCTTCACCAAAGCC 3093395 29 100.0 32 NNNNNNNNNN ............................. TAATGGCCACAGTAAGTCAAACGGTTCTGGAA 3093456 29 100.0 32 NNNNNNNNNN ............................. GAGTCCGGGGGTTATATAGTTATTTAATGAGC 3093517 29 100.0 32 NNNNNNNNNN ............................. TTGGGCGTCGGTTTTTTCAGGTTTAGGTCCGG 3093578 29 100.0 32 NNNNNNNNNN ............................. TCAACTGTCAGTTCGTCGTTAGCCAGTAATTC 3093639 29 100.0 32 NNNNNNNNNN ............................. CTGAAAACGCATGGAATCCGGTATAAACAGTC 3093700 29 100.0 32 NNNNNNNNNN ............................. GATGTAACTGATAGCGAAATATATTGGGATAA 3093761 29 100.0 32 NNNNNNNNNN ............................. GAAACGTAAACAGGGTAAGATACAACTCTGCA 3093822 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 33 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [61.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [99,298] Score: 0.18/0.18 # # Final direction: R [0,2.1 Confidence: HIGH] >NC_021082 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =============================== ====== 1577179 31 96.8 37 TTATAGGGAC ....................C.......... CCTATAACGAGCAATGGCATTTTGATCTACGGTAAAC 1577247 31 96.8 35 TACGGTAAAC ....................C.......... TTCTTGAATACCTCCGGAGTCAGTTAAGATAAGGC 1577313 31 96.8 36 AAGATAAGGC ....................C.......... CTTTTTCAAGAATCAAGATTAAGAGATCCAAACAAC 1577380 31 96.8 37 TCCAAACAAC ....................C.......... CACCGCTGCTACTTCGGTTATCGGAGTAGTTTGCACC 1577448 31 96.8 36 AGTTTGCACC ....................C.......... GTGGCACAGTAACACGAGCAGATGCTGATAAACGCC 1577515 31 96.8 35 GATAAACGCC ....................C.......... CAGCAGCCGTTGTTACCGTGGTGCAATGCTTGCGC 1577581 31 96.8 37 ATGCTTGCGC ....................C.......... TACACTTATTGCCATAGGGTAGTAGTAATCTTTTACC 1577649 31 96.8 35 ATCTTTTACC ....................C.......... TGCGATTTTTGGATTTTTCGGGCGATAAATGATAC 1577715 31 100.0 35 TAAATGATAC ............................... TCGTGGCTGGTTATACAAAGAAAAGCATTGTTGGG 1577781 31 100.0 36 CATTGTTGGG ............................... TTAAATCTAAAGCTAAAGCTATTTTATTAATTAAAG 1577848 31 100.0 35 TTAATTAAAG ............................... TTTACCGTTTACCGATTGGATTTTAATGCTAGAGG 1577914 31 100.0 36 ATGCTAGAGG ............................... CCTAAATTGCCGTAAAAATCTGCCATTAGCTACGCG 1577981 31 100.0 36 TAGCTACGCG ............................... CTCATAACGAATCCAATCCTGTTCGGTTAATCCCCG 1578048 31 100.0 38 TTAATCCCCG ............................... AGGGGCGTGTACCGCAATCAATTTTAATTATAACCAAG 1578117 31 100.0 36 TATAACCAAG ............................... TTTATCTGTTGCGGTCAATTGTATATCTTGAATTTG 1578184 31 100.0 36 CTTGAATTTG ............................... CTCGTCTTGAATTGGAAAATCAAGGGCGACAATAGG 1578251 31 93.5 CGACAATAGG .........T............T........ GGTGTACCCA ========== ====== ====== ====== ========== =============================== 17 31 36 CAGCCACCTACGCGTGGCTGTGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: F [8,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.50,-1.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [65.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [193,251] Score: 0/0.18 # # Final direction: F [5.92,0 Confidence: HIGH] >NC_021176 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 2912041 29 100.0 32 NNNNNNNNNN GT........................... GGACAGCAACCCGTGTCGGATATCAGACAGAT 2912102 29 100.0 32 NNNNNNNNNN ............................. ACGCGAATCGCCAATCGCCGCCGCGTGAATTG 2912163 29 100.0 32 NNNNNNNNNN ............................. CCACGATGTATGCCGACCGTGATTTTTACCGC 2912224 29 100.0 32 NNNNNNNNNN ............................. AGATACGCCTTTACGTCGCCCTCTTTGGCGCG 2912285 29 100.0 32 NNNNNNNNNN ............................. ATTAAAAAAGATTAATGTTGGTTATAGTTTTA 2912346 29 100.0 32 NNNNNNNNNN .................T........... TAAAACACCGGTTGCGCAACCTCCGCGGGGAT 2912407 29 100.0 1 NNNNNNNNNN .........................T.GG NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 7 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [48.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [16,112] Score: 0.18/0.18 # # Final direction: R [0.41,1.69 Confidence: MEDIUM] >NC_021149 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 3261032 32 100.0 36 NNNNNNNNNN ................................ CGTGAATGACTCCGGTGTTGCCGGCGTACTGCGCGG 3261100 32 100.0 34 NNNNNNNNNN ................................ TGACGTGCTCGGCATTCTTTGATGGCGGGAAGAT 3261166 32 100.0 36 NNNNNNNNNN ................................ ATCGGTATGGCTGTGAGTGGCTTGGCGCATCAGGCC 3261234 32 100.0 34 NNNNNNNNNN ................................ ACTGGCGGGCCATCGGCCAGGCACTGCTCCAGCA 3261300 32 100.0 36 NNNNNNNNNN ................................ ATGGGCAGGGCCGGCATCAGGCGCCGGTCAGGTGGT 3261368 32 100.0 34 NNNNNNNNNN ................................ AGGCGTATATCGCCGCCGGCGGCGACGTGTTCAT 3261434 32 100.0 35 NNNNNNNNNN ................................ GGACGCGGCGCTGCAGACGAGCCTCGCCCAGGCGA 3261501 32 100.0 34 NNNNNNNNNN ................................ GCCTCGCGAGCGTGCGGGCCAGCTCGTCAGGCGT 3261567 32 100.0 35 NNNNNNNNNN ................................ CTGGCTTCCTCGCGAGCGTAGTGCTCGGTCATGCC 3261634 32 100.0 34 NNNNNNNNNN ................................ CGCTGATGGCCCTGAATCCTCCGGCGGCGACAAA 3261700 32 100.0 36 NNNNNNNNNN ................................ AGCCACAACTGCGCGTACTCTCCGAATGCTGGAACT 3261768 32 100.0 35 NNNNNNNNNN ................................ GTATCAGCCACAGCGGTGTTGCCGCACAACTGGTT 3261835 32 100.0 34 NNNNNNNNNN ................................ GGCCTTGACGCCAGCCTTCCCTTGCTGGATCTGC 3261901 32 100.0 37 NNNNNNNNNN ................................ GAGCGTGAGAGTCCATGCACGAGATTTCGTCATCGCT 3261970 32 100.0 36 NNNNNNNNNN ................................ GCGAATTTCGACGTAGGCTTGGGCCGCCCACGCATG 3262038 32 100.0 34 NNNNNNNNNN ................................ TCGGCAACGAAGCCATCACCGGCAACTATGTGTT 3262104 32 100.0 35 NNNNNNNNNN ................................ CCGCGAGGCCTGATCGCCATGGCCATCGTCGGCAT 3262171 32 100.0 35 NNNNNNNNNN ................................ TGGCACCACTTGATGAACTTGCCCACGCTCGGGGC 3262238 32 100.0 34 NNNNNNNNNN ................................ TGTAGCGGGTTTTCTCGCTCGCCGAGGCGTAGGT 3262304 32 100.0 34 NNNNNNNNNN ................................ GCAAGCGACGCTCGGCGACCTTCTTCACCGTGAC 3262370 32 100.0 36 NNNNNNNNNN ................................ TACCGACGCGGCTTTCTCCGCGTTTGAGGCCTGGAC 3262438 32 100.0 34 NNNNNNNNNN ................................ AGGCTGATCGGCTTCCAGTCGAGGCCCATCTCCA 3262504 32 100.0 36 NNNNNNNNNN ................................ CAGCAGATGACCACCTACCTGGAGGAGTTCGCCGAC 3262572 32 100.0 34 NNNNNNNNNN ................................ TCGCGACTGGGATGCAACCAGTACGGGCTATGCC 3262638 32 100.0 35 NNNNNNNNNN ................................ GATTTCATATCCCCAGGCCGGCCTTGCTACAGCGA 3262705 32 100.0 34 NNNNNNNNNN ................................ CTGCTCTGGGGCGGTGATCCCGACGAAACGAGAG 3262771 32 100.0 36 NNNNNNNNNN ................................ GCGCGTGCACATGCGGTGATGCGTGCGCGTACCGGC 3262839 32 100.0 34 NNNNNNNNNN ................................ CCGGCATTGCCTTCCTGACCCTGCGCGACAACAC 3262905 32 100.0 33 NNNNNNNNNN ................................ CAGACTGGCCGAGCTGGCGGTTACGTTTAGCCA 3262970 32 100.0 34 NNNNNNNNNN ................................ ATTAGAAATGCCAGCCCAGCAGCTCCAAATATAT 3263036 32 100.0 1 NNNNNNNNNN ........................T.TCAACG NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 31 32 34 GTTTCAATCCACACGCCCGCATGGGGCGTGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [6,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.20,-6.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [40.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [230,62] Score: 0.18/0.18 # # Final direction: R [0.96,4.77 Confidence: HIGH] >NC_021149 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 3265060 32 100.0 36 TGCGCGGCAT ................................ CAGAGCGTGGCCCGCATGGCCGAGTTGCGCCTGGCG 3265128 32 100.0 35 GCGCCTGGCG ................................ TTGTATTTGCGCGCCCGGCGGTTGGACAGGGCAGT 3265195 32 100.0 35 ACAGGGCAGT ................................ CAGGGTGGGCAGAGCGAGGGGATAGACCCGCTGCC 3265262 32 100.0 35 ACCCGCTGCC ................................ GTGCAGACCTATGCCGGAGCTAGCCTGGCCTTCCT 3265329 32 100.0 36 TGGCCTTCCT ................................ CTACGCTTGGCCGATGCGGCTCAGTCCCTGAGCAAA 3265397 32 100.0 35 CCTGAGCAAA ................................ CGGAGTTCTCAAGCGGAGTGGATCGCTGATGGCCC 3265464 32 100.0 34 CTGATGGCCC ................................ TGACTGCGTACGTCGATGACGGTGCGCTGATCGT 3265530 32 100.0 36 CGCTGATCGT ................................ ATAGCCCCACCCAGAGCGCTTGATCTCGATGGCGGC 3265598 32 100.0 35 CGATGGCGGC ................................ TCGGAGGGCGCTTCCGCCTCTTGCGGGGCTTCGTT 3265665 32 100.0 34 GGGCTTCGTT ................................ GCTCCACCCATAGGGTCCCTGAAAGCCATGGGAA 3265731 32 100.0 34 GCCATGGGAA ................................ CTGCCGGTGCGAAGCGTGCACAGCGGCATACAGG 3265797 32 100.0 35 GGCATACAGG ................................ AATTCGCATCATGCCGGAACGCGCAGAGACGTGAA 3265864 32 100.0 36 GAGACGTGAA ................................ GTTGCTTTAATTGTTGATCCAAACGTATCCCTTGTT 3265932 32 100.0 35 ATCCCTTGTT ................................ CCGCCAGTGATTCGGCTTGCGAGACGAAATGAGAT 3265999 32 100.0 35 GAAATGAGAT ................................ TCCTGCTGGTCGCGAGCAGGGATCGCCCAGTCGCT 3266066 32 100.0 34 CCCAGTCGCT ................................ TGTCCGGCGAGGGCAGGGCGTTCTGTACGCCGAG 3266132 32 100.0 34 GTACGCCGAG ................................ GCTTACGCAGCGTTCCCGGCCCCGGGATGGTGTT 3266198 32 100.0 35 GGATGGTGTT ................................ ACGAACGTGACCAGCACTTCGACGCTCAATATCGT 3266265 32 100.0 34 TCAATATCGT ................................ CGTCCCTGGGGCGCATCCCGCTGACCGCGATCAA 3266331 32 100.0 CCGCGATCAA ................................ CCCGTATGTA ========== ====== ====== ====== ========== ================================ 20 32 34 GTTTCAATCCACACGCCCGCATGGGGCGTGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [6,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.20,-6.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [132,181] Score: 0/0.18 # # Final direction: R [0.37,4.77 Confidence: HIGH] >NC_021150 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 3261020 32 100.0 36 NNNNNNNNNN ................................ CGTGAATGACTCCGGTGTTGCCGGCGTACTGCGCGG 3261088 32 100.0 34 NNNNNNNNNN ................................ TGACGTGCTCGGCATTCTTTGATGGCGGGAAGAT 3261154 32 100.0 36 NNNNNNNNNN ................................ ATCGGTATGGCTGTGAGTGGCTTGGCGCATCAGGCC 3261222 32 100.0 34 NNNNNNNNNN ................................ ACTGGCGGGCCATCGGCCAGGCACTGCTCCAGCA 3261288 32 100.0 36 NNNNNNNNNN ................................ ATGGGCAGGGCCGGCATCAGGCGCCGGTCAGGTGGT 3261356 32 100.0 34 NNNNNNNNNN ................................ AGGCGTATATCGCCGCCGGCGGCGACGTGTTCAT 3261422 32 100.0 35 NNNNNNNNNN ................................ GGACGCGGCGCTGCAGACGAGCCTCGCCCAGGCGA 3261489 32 100.0 34 NNNNNNNNNN ................................ GCCTCGCGAGCGTGCGGGCCAGCTCGTCAGGCGT 3261555 32 100.0 35 NNNNNNNNNN ................................ CTGGCTTCCTCGCGAGCGTAGTGCTCGGTCATGCC 3261622 32 100.0 34 NNNNNNNNNN ................................ CGCTGATGGCCCTGAATCCTCCGGCGGCGACAAA 3261688 32 100.0 36 NNNNNNNNNN ................................ AGCCACAACTGCGCGTACTCTCCGAATGCTGGAACT 3261756 32 100.0 35 NNNNNNNNNN ................................ GTATCAGCCACAGCGGTGTTGCCGCACAACTGGTT 3261823 32 100.0 34 NNNNNNNNNN ................................ GGCCTTGACGCCAGCCTTCCCTTGCTGGATCTGC 3261889 32 100.0 37 NNNNNNNNNN ................................ GAGCGTGAGAGTCCATGCACGAGATTTCGTCATCGCT 3261958 32 100.0 36 NNNNNNNNNN ................................ GCGAATTTCGACGTAGGCTTGGGCCGCCCACGCATG 3262026 32 100.0 34 NNNNNNNNNN ................................ TCGGCAACGAAGCCATCACCGGCAACTATGTGTT 3262092 32 100.0 35 NNNNNNNNNN ................................ CCGCGAGGCCTGATCGCCATGGCCATCGTCGGCAT 3262159 32 100.0 35 NNNNNNNNNN ................................ TGGCACCACTTGATGAACTTGCCCACGCTCGGGGC 3262226 32 100.0 34 NNNNNNNNNN ................................ TGTAGCGGGTTTTCTCGCTCGCCGAGGCGTAGGT 3262292 32 100.0 34 NNNNNNNNNN ................................ GCAAGCGACGCTCGGCGACCTTCTTCACCGTGAC 3262358 32 100.0 36 NNNNNNNNNN ................................ TACCGACGCGGCTTTCTCCGCGTTTGAGGCCTGGAC 3262426 32 100.0 34 NNNNNNNNNN ................................ AGGCTGATCGGCTTCCAGTCGAGGCCCATCTCCA 3262492 32 100.0 36 NNNNNNNNNN ................................ CAGCAGATGACCACCTACCTGGAGGAGTTCGCCGAC 3262560 32 100.0 34 NNNNNNNNNN ................................ TCGCGACTGGGATGCAACCAGTACGGGCTATGCC 3262626 32 100.0 35 NNNNNNNNNN ................................ GATTTCATATCCCCAGGCCGGCCTTGCTACAGCGA 3262693 32 100.0 34 NNNNNNNNNN ................................ CTGCTCTGGGGCGGTGATCCCGACGAAACGAGAG 3262759 32 100.0 36 NNNNNNNNNN ................................ GCGCGTGCACATGCGGTGATGCGTGCGCGTACCGGC 3262827 32 100.0 34 NNNNNNNNNN ................................ CCGGCATTGCCTTCCTGACCCTGCGCGACAACAC 3262893 32 100.0 33 NNNNNNNNNN ................................ CAGACTGGCCGAGCTGGCGGTTACGTTTAGCCA 3262958 32 100.0 34 NNNNNNNNNN ................................ ATTAGAAATGCCAGCCCAGCAGCTCCAAATATAT 3263024 32 100.0 1 NNNNNNNNNN ........................T.TCAACG NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 31 32 34 GTTTCAATCCACACGCCCGCATGGGGCGTGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [6,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.20,-6.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [40.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [230,62] Score: 0.18/0.18 # # Final direction: R [0.96,4.77 Confidence: HIGH] >NC_021150 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 3265048 32 100.0 36 TGCGCGGCAT ................................ CAGAGCGTGGCCCGCATGGCCGAGTTGCGCCTGGCG 3265116 32 100.0 35 GCGCCTGGCG ................................ TTGTATTTGCGCGCCCGGCGGTTGGACAGGGCAGT 3265183 32 100.0 35 ACAGGGCAGT ................................ CAGGGTGGGCAGAGCGAGGGGATAGACCCGCTGCC 3265250 32 100.0 35 ACCCGCTGCC ................................ GTGCAGACCTATGCCGGAGCTAGCCTGGCCTTCCT 3265317 32 100.0 36 TGGCCTTCCT ................................ CTACGCTTGGCCGATGCGGCTCAGTCCCTGAGCAAA 3265385 32 100.0 35 CCTGAGCAAA ................................ CGGAGTTCTCAAGCGGAGTGGATCGCTGATGGCCC 3265452 32 100.0 34 CTGATGGCCC ................................ TGACTGCGTACGTCGATGACGGTGCGCTGATCGT 3265518 32 100.0 36 CGCTGATCGT ................................ ATAGCCCCACCCAGAGCGCTTGATCTCGATGGCGGC 3265586 32 100.0 35 CGATGGCGGC ................................ TCGGAGGGCGCTTCCGCCTCTTGCGGGGCTTCGTT 3265653 32 100.0 34 GGGCTTCGTT ................................ GCTCCACCCATAGGGTCCCTGAAAGCCATGGGAA 3265719 32 100.0 34 GCCATGGGAA ................................ CTGCCGGTGCGAAGCGTGCACAGCGGCATACAGG 3265785 32 100.0 35 GGCATACAGG ................................ AATTCGCATCATGCCGGAACGCGCAGAGACGTGAA 3265852 32 100.0 36 GAGACGTGAA ................................ GTTGCTTTAATTGTTGATCCAAACGTATCCCTTGTT 3265920 32 100.0 35 ATCCCTTGTT ................................ CCGCCAGTGATTCGGCTTGCGAGACGAAATGAGAT 3265987 32 100.0 35 GAAATGAGAT ................................ TCCTGCTGGTCGCGAGCAGGGATCGCCCAGTCGCT 3266054 32 100.0 34 CCCAGTCGCT ................................ TGTCCGGCGAGGGCAGGGCGTTCTGTACGCCGAG 3266120 32 100.0 34 GTACGCCGAG ................................ GCTTACGCAGCGTTCCCGGCCCCGGGATGGTGTT 3266186 32 100.0 35 GGATGGTGTT ................................ ACGAACGTGACCAGCACTTCGACGCTCAATATCGT 3266253 32 100.0 34 TCAATATCGT ................................ CGTCCCTGGGGCGCATCCCGCTGACCGCGATCAA 3266319 32 100.0 CCGCGATCAA ................................ CCCGTATGTA ========== ====== ====== ====== ========== ================================ 20 32 34 GTTTCAATCCACACGCCCGCATGGGGCGTGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [6,6] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-7.20,-6.50] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [132,181] Score: 0/0.18 # # Final direction: R [0.37,4.77 Confidence: HIGH] >NC_021175 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ======================= ====== 525220 23 100.0 47 NNNNNNNNNN ........C.............. TTATTGTTTTTAATCTCATAAAAATCTAAATAAAGTTAGACCCCCCC 525290 23 100.0 51 NNNNNNNNNN ....................... GATTTTGAGTTTAGGAATGCGTATGCCCCATCGATTCGTTAGAACCCCCCA 525364 23 100.0 50 NNNNNNNNNN ....................... CTATTTGTGTCCTTATCTGTAACCTTATTACGGTTCGTTAGAACCCCCCC 525437 23 100.0 48 NNNNNNNNNN ........C.....A........ TTATAATGCTTGTGGCTCTTAGGAAGGAACTTCCGTTAGAACCCCCCT 525508 23 100.0 48 NNNNNNNNNN ..............T........ GATCCTATGTCAACTACATCAAAATAATATACGCGTTAGAACCCCCCT 525579 23 100.0 52 NNNNNNNNNN ........C.....A........ TTGTTTTGCATTGGTGTGTGGAAATAAAGATCCATACGTTAGCCCCCAAAAA 525654 23 100.0 51 NNNNNNNNNN ......T.......A........ AAATCTTAAGTTTTTCAATTTACTTGAAATTCCCATTGGTTAGCCCCCCCT 525728 23 100.0 48 NNNNNNNNNN ....................... TTTCGCACGATGTCGCTTATGTGGTTGATGTGTTCGTTAGAGCTCCCC 525799 23 100.0 52 NNNNNNNNNN ........C.....A........ TTGTTTTGCATTGGTGTGTGGAAATAAAGATCCATTCGTTAGATCCCCCAAA 525874 23 100.0 46 NNNNNNNNNN ........C.......T...... CTGCATCTTCTTCTGTCCAGACCAGCTGGTATGTTAGCCCCCAAAG 525943 23 100.0 49 NNNNNNNNNN ........C.........T.... CTACCGTTCTGCGGCGCTATCCCAGTGAGGTACTGGTTAGAACCCTCCA 526015 23 100.0 51 NNNNNNNNNN T...................... CCAACAGGGGCTTTACCTTGATTTGCTGGGTCTAATGTTAGCTCCCCCCAA 526089 23 100.0 50 NNNNNNNNNN ........C.....A........ TTGCGATTCCCATGTTTTAAAACAAACATTTTTTTAGTTAGAATCTCCCA 526162 23 100.0 50 NNNNNNNNNN ........C.............. TGTCATCATTTTATAAATATAAGAGTCGCTCATTTCGTTAGAACCCCCAT 526235 23 100.0 52 NNNNNNNNNN ........C.............. ATAAGTTTATAGGTTATCATCGAATTAAAGAACTTGAGCTAGACTCTTCCAC 526310 23 100.0 51 NNNNNNNNNN .TA.....C.....T........ TCGTCGATACGACTCTGAATGTCCATATCAAGATTTTGTTAGACCCCCAAG 526384 23 100.0 55 NNNNNNNNNN ........C.....T........ AAAAAATCCACTAGTGAAGCGATAGGAGTTTGGGATGAGTTAGACCCCCCCCCCT 526462 23 100.0 49 NNNNNNNNNN ....................... CCCAATTGGCTCTTTAGTTTCAATCTCAAGGATTGTGTTAGAACCCCCA 526534 23 100.0 50 NNNNNNNNNN ........C.............. TTAAAATACTCCTTCGTCCAGCTGTACACTGTATCAGTTAGACCCCCCCT 526607 23 100.0 49 NNNNNNNNNN ......................T GGTTCTAAAACCTCGCATTGAGCAATATCTTCTGTGTTAGATCTGCCCT 526679 23 100.0 50 NNNNNNNNNN ..AT..T.C.............. GAAGTAACGAAGCCTAATACATTATCAGGACCCTTTGTTAGACCCCCCCT 526752 23 100.0 45 NNNNNNNNNN ....................... GTTTCACCGCTTCTTCTTATCCGGTGTTTTAGTTAGAACCCTCCA 526820 23 100.0 50 NNNNNNNNNN T.............T........ TTGACGATGACAGGGCGCTTTTGGACATCACGGTACGTTAGATCCCCCCT 526893 23 100.0 47 NNNNNNNNNN ..A.................... GCCATGCCAGCATCTTTAATAAAATCAATCATTGTTAGACCCCTCCA 526963 23 100.0 51 NNNNNNNNNN T.............A........ ATAAGTTTTATAGGTTATCATCGAATTAAAGAACTTGGTTAGACCCCCCAC 527037 23 100.0 46 NNNNNNNNNN ........C.....T........ TCACGCTCCCAATCTAAAATCACGCGCATTTGTGTTAGAGCCCCCT 527106 23 100.0 49 NNNNNNNNNN ....................... AGAAGAGTGCCGGATTTACAGAAATGGTCGATAATGTTAGACCCCCCAC 527178 23 100.0 49 NNNNNNNNNN ........C.............. GAAATCAAGTGCACTCAAATCATCAGCTCCTTTAGTTAGAGCCCCCCAT 527250 23 100.0 49 NNNNNNNNNN ........C.............. ATACTTGAAGATTCAACAATAGCGAACCTACGGCCGTTAGAACCCTCCA 527322 23 100.0 50 NNNNNNNNNN T...................... CTAGCAATTTCGATTGCCAGTTTTGATTGGATGTTTGTTAGATTCCCTCT 527395 23 100.0 51 NNNNNNNNNN ..A.....C.....T........ GCAACATCCATGTCGTCAAAGTGCGATCGATAGCCAAGTTAGAGCCCCCCA 527469 23 100.0 50 NNNNNNNNNN ..............A........ ATAGGGTCAAATGGTGCTACTAAGTGTTTACGTTTGGTTAGAACTCCCAT 527542 23 100.0 50 NNNNNNNNNN ..C.....C.....T........ GATTCACCCCACGAAATTTTGAAATAGATACCTGCTGTTAGAATCCCCTT 527615 23 100.0 48 NNNNNNNNNN ........C.....T........ AGCTCTGGATTTTCGTAGATGTTACCGATGATTTCGTTAGAACTCCCT 527686 23 100.0 51 NNNNNNNNNN ..............T........ TTTTTCAAACTACTACTAGCGTTTGCTAGCTATCTAAGTTAGAACCCCCAA 527760 23 100.0 49 NNNNNNNNNN ..............A........ GATAAATGTACCAATCAGGTAGACCAAGAAAATATGTTAGATCCCCCCC 527832 23 100.0 46 NNNNNNNNNN ..............T........ AGAAAATCAGTTAAGGTTCGACTTTCGTATTTTGTTAGACCCCCCT 527901 23 100.0 54 NNNNNNNNNN ..A.................... TCTAAAATTTCAATATCATGTATCATAGTCTCACCTATATGTTAGACCCCCAAA 527978 23 100.0 47 NNNNNNNNNN ..............A........ TGAATCCTCCTAAATAAAATTTTCAAGCAAAAGGTTAGAACCCTCCA 528048 23 100.0 48 NNNNNNNNNN T.......C.....T........ TACCATCGATCATCCCAAAATGATCCTTGTCAGCGTTAGATCCCACAC 528119 23 100.0 49 NNNNNNNNNN ....................... TAAAATCTTTTTACCATATCGTTTAACAGCCTTTTGTTAGATCCCCCCT 528191 23 100.0 48 NNNNNNNNNN ........C.............. TCTTTTCAAACAGTTCTTCCCAAATTGTAGATTTGTTAGACCCCCCCT 528262 23 100.0 50 NNNNNNNNNN ....................... TTGTGATTCCCATGTTTTAAAACAAACATTTTTTTAGTTAGAATCCCCCA 528335 23 100.0 1 NNNNNNNNNN ..............T..A..GTG NNNNNNNNNN ========== ====== ====== ====== ========== ======================= 44 23 49 AATCCTCGAGAGGGGACGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [8,2] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: F [17-24] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [50.0-51.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [122,222] Score: 0/0.18 # # Final direction: F [0.78,0 Confidence: HIGH] >NC_021169 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1129026 30 100.0 38 TGTGCAAAAA .............................. GTTGTAAACATCCCTAACAGCAAATCTGATGACATCTG 1129094 30 96.7 37 ATGACATCTG ...........G.................. GAAGAGCGAACTACTCTAAAAATCAAAGCAGTAAACG 1129161 30 96.7 38 GCAGTAAACG ...........G.................. TCTTGTGGTTCTATCGACTCGACCTTAAATGTCGCTTT 1129229 30 100.0 ATGTCGCTTT .............................. TAAACTGTTTAT ========== ====== ====== ====== ========== ============================== 4 30 37 CTTTCAATCCTACAATAGTCTGATTTTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.80,-3.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [25,451] Score: 0.18/0.18 # # Final direction: R [0,5.05 Confidence: HIGH] >NC_021169 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1137912 30 100.0 39 NNNNNNNNNN T.CG.C..T..................... TTTTCTAACTTTTCCGAGCATGCGTCTTGTTCTGCTGTT 1137981 30 100.0 37 NNNNNNNNNN .............................. ATTCAAAGTTTGTATTTTATCGCATCAATAAACAAGC 1138048 30 100.0 38 NNNNNNNNNN .............................. AGAAAGATCCATCAAACATCGAAGTCGAGGTTCAGATC 1138116 30 100.0 37 NNNNNNNNNN .............................. AATGTTGGATTCATGACGAGACTCTTTTACAATGAGA 1138183 30 100.0 38 NNNNNNNNNN .............................. GGCTCACTCTTGGTAGTTGGGATCCAATTAAGAAGGAT 1138251 30 100.0 41 NNNNNNNNNN .............................. GGAGTTTGATGAAGCGGAGAGGTTTATTAGAGAAATTGACG 1138322 30 100.0 37 NNNNNNNNNN .............................. AAAAATAACTACATGTATGTGCATTCGCCCATTTTGT 1138389 30 100.0 39 NNNNNNNNNN .............................. AAACATGTTCCTGAGGCTGTTATGTGTGAATATTTCGGA 1138458 30 100.0 44 NNNNNNNNNN .............................. CTGCATCTCCAGCCCACATCTGTTGCCTCGAGCCTTCCACCGCA 1138532 30 100.0 38 NNNNNNNNNN .............................. CACCATCAACAACAAAATTCCACAAGCAGACATGAACA 1138600 30 100.0 42 NNNNNNNNNN .............................. GTTGGCGACTTCAAGATGGGAGGGTTTATGAATCTGCATCCT 1138672 30 100.0 38 NNNNNNNNNN .............................. AAGTTTTCGCATGCAATACCTCCTTATGTGGAGTACTG 1138740 30 100.0 38 NNNNNNNNNN .............................. TTAACAACTCAGGACAGCTTTACTTTTGGATTGAAAGC 1138808 30 100.0 44 NNNNNNNNNN .............................. ATTCAACACTTGTTTAACATAGTATATATTGATTATTGCAAATA 1138882 30 100.0 43 NNNNNNNNNN .............................. CTAAATAAAAGTTTGACCAATCCTGAAATCCGAACAATATTGT 1138955 30 100.0 38 NNNNNNNNNN .............................. AAGGGATATGCTTCAGATGGCACTAACTATGACATTGT 1139023 30 100.0 38 NNNNNNNNNN .............................. GTATTACAAAGGACAGACGCCCAAGGATTATGATATAA 1139091 30 100.0 38 NNNNNNNNNN .............................. AGGTAGTCTCTCAGAGAACCGTCGCCACAAACCAAAAC 1139159 30 100.0 41 NNNNNNNNNN .............................. GTGAATGGATTTAGTCCAGTGGTTTCTATGTCGAAAACTAT 1139230 30 100.0 38 NNNNNNNNNN .............................. TTGTTTAGAAAGACTGATGTTGTTATCGTAGATATCGC 1139298 30 100.0 37 NNNNNNNNNN .............................. ATAAAGCAGTATCCTGTGTGTTTGTAACTATATCGCA 1139365 30 100.0 41 NNNNNNNNNN .............................. CTGTATTGCTGAAGTTCATGGACTGCTCACCTCTCTTATAT 1139436 30 100.0 39 NNNNNNNNNN .............................. TGAAATATCAGAGCCGTGTAATGAAATACCACGAATCCC 1139505 30 100.0 36 NNNNNNNNNN .............................. ATCAATACATCTGCATGTAATAACCTTAGAGTTATA 1139571 30 100.0 37 NNNNNNNNNN .............................. GGTTTTTGTTAGGAGCTTTTACACCTTTGAGGAAAAA 1139638 30 100.0 38 NNNNNNNNNN .............................. TGAGCTTTACAGACAAGGTTATTTGAACAAAACAGTTC 1139706 30 100.0 36 NNNNNNNNNN .............................. AAGTTTAACAAATGTGCACCCGTCGCAATATGGTTT 1139772 30 100.0 38 NNNNNNNNNN .............................. ATTTTTATATACGGAGTGACAAAGATAGTATTGGGTGA 1139840 30 100.0 37 NNNNNNNNNN .............................. GAAGAGCGAACTACTCTAAAAATCAAAGCAGTAAACG 1139907 30 100.0 39 NNNNNNNNNN .............................. AAGAGGTATGCTGAAAGATATAGTAAAGAGAAAGTGGGG 1139976 30 100.0 38 NNNNNNNNNN .............................. CAGCCAGCGTAGGCGGAGCGGCAACATCTGATAGCAGT 1140044 30 100.0 38 NNNNNNNNNN .............................. ACGCTTGTGAATACAAACAAGGGGTGGGCGTTGTACTT 1140112 30 100.0 42 NNNNNNNNNN .............................. TTCGCTCAGAACCTCGATAAGAAAAGAGTTGTCAAAATGTGC 1140184 30 100.0 38 NNNNNNNNNN .............................. TCAGTTCTTGGTGCTGCTGATAGTGTTAAAGCATTTTT 1140252 30 100.0 40 NNNNNNNNNN .............................. TGTTCAGCAACAGAAAGTCTCTGGTCTCGAAATACTCAAC 1140322 30 100.0 37 NNNNNNNNNN .............................. CTGCTCCCATTCCCGACATATCCACAACAACCTTCTG 1140389 30 100.0 43 NNNNNNNNNN .............................. CGTTGAGTTCACGCTCACGGGACTGAACAAGCTCGCTGTTTAC 1140462 30 100.0 39 NNNNNNNNNN .............................. CATCGACGAGATTGATGAAACCCCTCGTTGCTACGAATG 1140531 30 100.0 36 NNNNNNNNNN .............................. GCAAGATGAAGGTGATTGATAAGAGGATTCCAGACG 1140597 30 100.0 37 NNNNNNNNNN .............................. AGTACCAGATTAAGGTTAAACTCCTGACCAATAATCT 1140664 30 100.0 38 NNNNNNNNNN .............................. AAGATCTTCCACAAGAATTTCATCCGCCTGAAGGAAAG 1140732 30 100.0 38 NNNNNNNNNN .............................. TAGTACTCAAGCTTGTTGATCTCGATCTCGTAGCTCAC 1140800 30 100.0 39 NNNNNNNNNN .............................. ATTTCGGGATTGGCTTTCCGGCGGTTATCCCTCTTCCAG 1140869 30 100.0 38 NNNNNNNNNN .............................. TCTGTTCAATGTCGTCGTCGAGCTAATAGACAAAATAG 1140937 30 100.0 37 NNNNNNNNNN .............................. TCTACTGCGGATTCTATTGAGTTTGCAATCCCTTCTG 1141004 30 100.0 38 NNNNNNNNNN .............................. GAAAAACTAGTGGAAGCAGTTAAGATATCTATGGATTC 1141072 30 100.0 38 NNNNNNNNNN .............................. AATCGTCACTGTCCAATAAGTTTCCACACTTCACACAG 1141140 30 100.0 46 NNNNNNNNNN .............................. TGAAAAAGAAACTAAACCGTAGATACGCCCGCATCTGCGATTGGTG 1141216 30 100.0 36 NNNNNNNNNN .............................. TGTCCCAGTGGTATTAAAAAACAACTCAACATCTAC 1141282 30 100.0 37 NNNNNNNNNN .............................. CTTTGACGGGGATCGAGTGGTTGTGGAGTGAGGTTAA 1141349 30 100.0 38 NNNNNNNNNN .............................. AAGTGGTCACGGGCAACAGCGGCTAAGGTGACAGATTT 1141417 30 100.0 37 NNNNNNNNNN .............................. TAGGGGAGTGGATTGGTGAAGTAAAAGCATACCTAAT 1141484 30 100.0 38 NNNNNNNNNN .............................. CCTGAAAAGTTGCAGATCGATGTTTCAGATATACTTAG 1141552 30 100.0 38 NNNNNNNNNN .............................. TATATCCAGGAATTGTTTTACTCCCGTCGCCACTCCTG 1141620 30 100.0 38 NNNNNNNNNN .............................. TCGATGTTCCAGAAGATTATTACGAAAGAACAAAGAAA 1141688 30 100.0 38 NNNNNNNNNN .............................. TGAGCTTTGAGGAGATGAGGAAGCATGGGGTACACTAC 1141756 30 100.0 39 NNNNNNNNNN .............................. GCTGATGCTCATTGACCTGTTCCCGTTCATGATGCTGCT 1141825 30 100.0 37 NNNNNNNNNN .............................. TGCATGTTGATCCAGAGTATGCCAAGAAGTTAAGCAA 1141892 30 100.0 36 NNNNNNNNNN .............................. CTGGACAGAAATCACATATACTGAAACCATACCAGA 1141958 30 100.0 38 NNNNNNNNNN .............................. AAATCCCAGTGTCTATGTTCAACTATCAGTTTACGGAG 1142026 30 100.0 38 NNNNNNNNNN .............................. AAAAAGATAAAGTTGTATCCATACTTTGTCCTAAGCAC 1142094 30 100.0 38 NNNNNNNNNN .............................. TATATCCAGGAATTGTTTTACTCCCGTCGCCACTCCTG 1142162 30 100.0 1 NNNNNNNNNN .............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 63 30 38 CTTTCAATCCTACAATAGTCTGATTTTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:70.00%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.80,-3.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [146,435] Score: 0.18/0.18 # # Final direction: R [0,5.46 Confidence: HIGH] >NC_021181 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== =========================== ====== 1540614 27 100.0 34 NNNNNNNNNN ..G.T........T.T.A.A..A.... TAAAAGGCTCTAAAAGCTACAGAGTTACCATCGA 1540675 27 100.0 34 NNNNNNNNNN .............T.T........... TTGGAATCTCATCGTAAGAAATAAGTCGCATATA 1540736 27 100.0 34 NNNNNNNNNN ........................... TCCTTTTCCTAGGATCTTCATAAGCTTCTCGCCA 1540797 27 100.0 34 NNNNNNNNNN ........................... TATCGTAGTCAATCTCGTACTTAAAACCACCCTG 1540858 27 100.0 34 NNNNNNNNNN ........................... TCCAGGTTGACTTGCGCTAGGTGTTGCATCAATA 1540919 27 100.0 34 NNNNNNNNNN ........................... TTAGGCAAATAGCCAATTTTTATCATACATTCCG 1540980 27 100.0 34 NNNNNNNNNN ........................... TCGGCAATTTTTGAAACAAACAACTATGTATATA 1541041 27 100.0 34 NNNNNNNNNN ........................... TAAATAAGGAAGATATTGCCACCCTCGGTACCCA 1541102 27 100.0 34 NNNNNNNNNN ........................... TACAAGTTTTGCTCTAACCATGATGTTGTAAACA 1541163 27 100.0 34 NNNNNNNNNN ........................... TACGTTAAAGCGGACAATAAGCTTCAACGTTTTA 1541224 27 100.0 34 NNNNNNNNNN ........................... TCGTGCTTGAAATTGCTCTCGGGGTTTCGCCTAA 1541285 27 100.0 34 NNNNNNNNNN ........................... TATTTGCTGCGAGTAACTCTGACTTGTTTACCCG 1541346 27 100.0 34 NNNNNNNNNN ........................... TTTTAGCTAAGTTTAAGACCGAAGATGGCCAAAG 1541407 27 100.0 34 NNNNNNNNNN ........................... TCGGCAATTTTTGAAACAAACAACTATGTATATA 1541468 27 100.0 34 NNNNNNNNNN ........................... TCGGCAATTTTTGAAACAAACAACTATGTATATA 1541529 27 100.0 34 NNNNNNNNNN ........................... TACAAGTTTTGCTCTAACCATGATGTTGTAAACA 1541590 27 100.0 35 NNNNNNNNNN ........................... TAGCTATCCAAATATTAAATTTGCACTAGTTAAGG 1541652 27 100.0 34 NNNNNNNNNN ........................... TGAAGAATTTTATCTTCTAGGTGGCTTTTTTGTG 1541713 27 100.0 34 NNNNNNNNNN ........................... TAGAAATATTTGATTTTGATAGTGAAAAAGAATA 1541774 27 100.0 34 NNNNNNNNNN ........................... TTCAAGATCAACCATTCATTTGCCACGCAAATCG 1541835 27 100.0 34 NNNNNNNNNN ........................... TTATTTTCTGGTGTGAAAAATGCTGATGATATTG 1541896 27 100.0 34 NNNNNNNNNN ........................... CCCAAGATATAATTAAAAGAAAATATCGTAGTCA 1541957 27 100.0 34 NNNNNNNNNN ........................... CTTTGATTTGAGTTAAGTACCGGTGCATCAATGA 1542018 27 100.0 34 NNNNNNNNNN ........................... CTCTTTAATGTGACCAAAAGCGCTCGTAGCAGCA 1542079 27 100.0 34 NNNNNNNNNN ........................... CGGACGCAAAAGGGCAGAAAGCTAATTTATGACG 1542140 27 100.0 34 NNNNNNNNNN ........................... CTTGCTATGTCCGCTCTTGCTTGCATTGCAGTCA 1542201 27 100.0 34 NNNNNNNNNN ............T.............. CCCACGCCACATATTGTGTGCGGAATAGCCTAAG 1542262 27 100.0 34 NNNNNNNNNN ........................... CTCTGCCAAAATAGTAGCCGAATCTGGAAAATCA 1542323 27 100.0 34 NNNNNNNNNN ........................... CAAAGTGTCACAAAACTAGCACCTTTCATTAAAA 1542384 27 100.0 34 NNNNNNNNNN ........................... CAGAGTTTAGTCGTCGCAATGTGTGTCTCAATGA 1542445 27 100.0 34 NNNNNNNNNN ........................... CTAATACGTAGGTGGCAAGCGTTGTCCGGATTTA 1542506 27 100.0 34 NNNNNNNNNN ........................... CATAAAAATAAGAGGAAACCACCGTTTTCTCTTA 1542567 27 100.0 1 NNNNNNNNNN ........................... NNNNNNNNNN ========== ====== ====== ====== ========== =========================== 33 27 34 GGATCACCTCCACATACGTGGAGAAAA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:51.85%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-5.90,-6.10] Score: 0/0.37 # Array degeneracy analysis suggestion: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [206,216] Score: 0/0.18 # # Final direction: R [0,0.41 Confidence: MEDIUM] >NC_021182 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 88057 30 100.0 35 TACACCTTAG .............................. AATTCCGGACTGTGATAATCCTGGAAGAGCTCATA 88122 30 100.0 34 AGAGCTCATA .............................. TTATACACACAACAATTAAACAAAGATCAGATAG 88186 30 100.0 35 GATCAGATAG .............................. AAAAAAGTTTTTGAAATTAAGGTGATTATCTGTAC 88251 30 96.7 35 TTATCTGTAC ..C........................... CGTTTTGGTCTTTTAATAATGTATTAGTATCATCC 88316 30 96.7 AGTATCATCC ..C........................... TACTGTATTTA ========== ====== ====== ====== ========== ============================== 5 30 34 GCTTAAACATAACCTATGTTAATAGTTAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:73.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [-1.80,-1.80] Score: 0/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [123,570] Score: 0.18/0.18 # # Final direction: R [0,0.18 Confidence: MEDIUM] >NC_021184 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 4234677 32 100.0 35 NNNNNNNNNN ................................ CTGAGGGCGCAGTCTTGGAGAACTTTAAGCGGAAA 4234744 32 100.0 35 NNNNNNNNNN ................................ ATAACCGAACACGTCCAGGGGTTCCTCGCAGAAGT 4234811 32 100.0 35 NNNNNNNNNN ................................ GTAATATTATCCTTGCCGACATCAACCCCGATACC 4234878 32 100.0 34 NNNNNNNNNN ................................ AAGTTACGTACCCACGAGGTGATGCGCTTGTGTG 4234944 32 100.0 35 NNNNNNNNNN ................................ GCCGAGGATGCGGCCACAAATCTATTGCAGGAAAT 4235011 32 100.0 34 NNNNNNNNNN ................................ GAATGTGCAGCGGCTTTTGTCAGTTCATAGCTAT 4235077 32 100.0 35 NNNNNNNNNN ................................ AAATTATAAGCGCCATTGGCGTCGGTGACATCAAA 4235144 32 100.0 35 NNNNNNNNNN ................................ ACATTTACTGATATGGTACGTGCAAAGGCATCAGA 4235211 32 100.0 34 NNNNNNNNNN ................................ TACCAGTACCTTTTAGATCGAGCCACCTGTGGGG 4235277 32 100.0 36 NNNNNNNNNN ................................ GCGGTATCCTCTCCGCGCAGGCTGCGGGGCATTGAG 4235345 32 100.0 34 NNNNNNNNNN ................................ AGCCATGTAAGACATCTCTCCTTTTAATTAATTA 4235411 32 100.0 35 NNNNNNNNNN ................................ CACCGGCTCCGGGCATCGTTGATCCGTTCAATGCA 4235478 32 100.0 34 NNNNNNNNNN ................................ GTTCGCCTTTAAAAACATGTTCGTTGAACAGCTG 4235544 32 100.0 34 NNNNNNNNNN ................................ GGATCGATATCAATTAGGAAAGGGGGCCGACGAT 4235610 32 100.0 34 NNNNNNNNNN ................................ GACAGCACAACGCCGGGATAAATCTTTTTTATAG 4235676 32 100.0 34 NNNNNNNNNN ................................ AATACAAACTAGAATGCTTAGTAATATTTCTAGT 4235742 32 100.0 35 NNNNNNNNNN ................................ GCGAACCAGGCAACAACTCGCGCTTCAATCGCGGA 4235809 32 100.0 36 NNNNNNNNNN ................................ TTTCATCAATCGCTCTCATGCTACTGCCAATCTGTT 4235877 32 100.0 34 NNNNNNNNNN ................................ CGACAGCTTATATGGACGGCATGGCGGTGGCAGT 4235943 32 100.0 34 NNNNNNNNNN ................................ GGGTAAATTTCTCTTGTGTATTATGATTTATGTT 4236009 32 100.0 35 NNNNNNNNNN ................................ CCTAGTATTGTACGACCAACAAAGTCACAAGTTGA 4236076 32 100.0 34 NNNNNNNNNN ................................ ATTGTGGATAATAGTATGGCCATGAGGAATAGGC 4236142 32 100.0 37 NNNNNNNNNN ................................ AAGTGTTTGGCTTATGCTTATTGGTTAAGTCAAACAT 4236211 32 100.0 34 NNNNNNNNNN ................................ TTGAGGACATGCGCGAAGATGTAAAGGAAATCAA 4236277 32 100.0 34 NNNNNNNNNN ................................ ATTGGATGCAATCAATCAACTAAAAGCCAGTGGG 4236343 32 100.0 35 NNNNNNNNNN ................................ AACGGTGAGGGGGAAAGTAAAAGATGAAAATAGAT 4236410 32 100.0 34 NNNNNNNNNN ................................ AACCTCGGACGCACGATTAAAGCTTTGTTTAAAT 4236476 32 100.0 35 NNNNNNNNNN ................................ TTTAGCCATTTGCAGCAGATTGTCTGCGGGTATTG 4236543 32 100.0 33 NNNNNNNNNN ................................ AATGCGTTTGTGATGCAGTGGGGGCTGAGATTA 4236608 32 100.0 34 NNNNNNNNNN ................................ TATCGCTTTTCGGAACCCAAGCCCAAGCGAGATT 4236674 32 100.0 34 NNNNNNNNNN ................................ ACAAATCATAGCCGAGCTGCAGCGGCGGGAGCAG 4236740 32 100.0 35 NNNNNNNNNN ................................ AGCCCAATGCGCCCGCAATCGGAGCAACGTATTTG 4236807 32 100.0 34 NNNNNNNNNN ................................ ATTTATGGAGATTATGTGTCGACTGACGGAATGG 4236873 32 100.0 33 NNNNNNNNNN ...............................T GGAAATTATCGGCGGTGAAGATGAAATTTTATC 4236938 32 100.0 33 NNNNNNNNNN ................................ GGACATAGATTGCTGGCTGCAGGGTTTATAGTG 4237003 32 100.0 34 NNNNNNNNNN ................................ GTTATTTTGTTGAATTGGTTTTTGATATGGCAGA 4237069 32 100.0 34 NNNNNNNNNN ................................ GCATCGGCGGGCTCTTCATGGATATGGGGACTGG 4237135 32 100.0 33 NNNNNNNNNN ................................ CCACTGGCTGTGTATATGCTGGAAGGGAAAAAG 4237200 32 100.0 34 NNNNNNNNNN ................................ GGTCAACGGTTTCGCCGGGTTTGAATTCCCTGTC 4237266 32 100.0 35 NNNNNNNNNN ................................ CCCACCCATGGCCGTTCCGGATCTGGGTTGATGAC 4237333 32 100.0 35 NNNNNNNNNN ................................ GTCAGCCGGCCAAATTGCTGACCTGTTAAATCAAT 4237400 32 100.0 35 NNNNNNNNNN ................................ GAAATGGAGGGAAATACTGTGATTATCGAGAGTAA 4237467 32 100.0 36 NNNNNNNNNN ................................ TTTCAATAGCTTGCTTATGCAGCCCACATAATTCGT 4237535 32 100.0 34 NNNNNNNNNN ................................ ATTGGGCGTAAAACGCCAAGTGTTTGCATATCTG 4237601 32 100.0 35 NNNNNNNNNN ................................ GGTTTCACCTCCTCCTGTTCTTTTTCATCCTGACA 4237668 32 100.0 33 NNNNNNNNNN ................................ TGGGCACTATACTTGTATCTCATCGAGCAGGGC 4237733 32 100.0 35 NNNNNNNNNN ................................ ACTGCAAGCGCCGGGTGGCGGGCGGAAAGGAAGGT 4237800 32 100.0 34 NNNNNNNNNN ................................ CTTACCCAGACCCGGATAAGAAGCCTATTTTTGA 4237866 32 100.0 33 NNNNNNNNNN ................................ GCGTTGGCGTGATCGTTCCCGTATTCGCTAAAT 4237931 32 100.0 35 NNNNNNNNNN ................................ TTGCCTGTCCAGCAAAAATATTTTGCTGCAAAAAT 4237998 32 100.0 34 NNNNNNNNNN ................................ GGACATAGATTGCTGGCTGCAGGGTTTATAGTGC 4238064 32 100.0 35 NNNNNNNNNN ................................ ATGGCATGAACATGGACGAGTTCTTTTCTGAGCTC 4238131 32 100.0 34 NNNNNNNNNN ................................ CTGCCCTATTGGTCGGTCAGTATGTGCATAGTTG 4238197 32 100.0 35 NNNNNNNNNN ................................ GCCAACACGGATCGGGGCCTTGTTCATGGAGATGG 4238264 32 100.0 34 NNNNNNNNNN ................................ GTATCTGTTTCTTTTTTTGCCTTTTGACCCATCA 4238330 32 100.0 34 NNNNNNNNNN ................................ GCTGGCTGTTTATGGCCGCTTCAAGGCGGATAAG 4238396 32 100.0 35 NNNNNNNNNN ................................ CCGTATGCAAAGGGTTCACAGCGGAAAGTTATCTC 4238463 32 100.0 34 NNNNNNNNNN ................................ ATCAATAGCGGACGGTAAAGCGATGGTGCAGGTT 4238529 32 100.0 35 NNNNNNNNNN ................................ GGGCGAAGTCAGGCAAGACTACGCTGGCATTGCAG 4238596 32 100.0 34 NNNNNNNNNN ................................ GAGTCGGAGCCAGTACATCGGCTTTTTAGAATGT 4238662 32 100.0 33 NNNNNNNNNN ................................ GCATAAATAAAGTCTTTTGTAAACTGATCACCT 4238727 32 100.0 33 NNNNNNNNNN ................................ CTACAGGAAATACGGGTGTCTAGCTTGATACAC 4238792 32 100.0 35 NNNNNNNNNN ................................ CGTTGTACCACCCACAGGATCACCTCCAGGTTCAT 4238859 32 100.0 34 NNNNNNNNNN ................................ AACATAGATTCATCCTCCTTTTGTTTTGTTATAT 4238925 32 100.0 35 NNNNNNNNNN ................................ TCTGACCATAGTTCAAACTGTGCTGCTGTGCCCGT 4238992 32 100.0 35 NNNNNNNNNN ................................ GACCGGGTCCGTATTCTGATCGGCCACAACAAAGG 4239059 32 100.0 37 NNNNNNNNNN ................................ ATGGCGCTTCAGGAGATGTTAGACGATTTACTATCTT 4239128 32 100.0 34 NNNNNNNNNN ................................ ACTGTACCGCCTCACCTTTAAACCCACCCGGTTT 4239194 32 100.0 34 NNNNNNNNNN ................................ CGGCGATGGGCTTCAGACAATGCCAGATGGGCCA 4239260 32 100.0 34 NNNNNNNNNN ................................ ACCTCAATACTTTAATCCAGATGCGGACAATTAC 4239326 32 100.0 36 NNNNNNNNNN ................................ TTCTACCTGAGCGCGATCAGCGGTCCTGGTGAAGGT 4239394 32 100.0 34 NNNNNNNNNN ................................ TATGCTTTAGATTGAGGTGTTTTAAATGAGTAAA 4239460 32 100.0 36 NNNNNNNNNN ................................ GGTGACACCTGGGGAATGTTCTTCCCTCCTACTATG 4239528 32 100.0 35 NNNNNNNNNN ................................ GATATTGGAACCAGCGAGTCAAGCGGGGTGTGTAT 4239595 32 100.0 33 NNNNNNNNNN ................................ GTAGGCAAAGAGTATCTGTCCGAGTTTATTTTA 4239660 32 100.0 34 NNNNNNNNNN ................................ CGACTATATGTACAAGAAAGGTATGGGATTACAA 4239726 32 100.0 35 NNNNNNNNNN ................................ CGGAATAGCTCTAACGCCGGGAGATTACTTTTACG 4239793 32 100.0 35 NNNNNNNNNN ................................ GTGCCGCAGGTACCGCCAAGTCTGAACGTATGGAA 4239860 32 100.0 34 NNNNNNNNNN ................................ GCAACGCGCAACTCTTTCATTTGTTGTAGATTGT 4239926 32 100.0 35 NNNNNNNNNN ................................ TTATAGAGGAAATACAGGTGTCAGAACAACTAAGT 4239993 32 100.0 34 NNNNNNNNNN ................................ TATCCGACATTGGAACTAGCCGAGTATACCAGTA 4240059 32 100.0 34 NNNNNNNNNN ................................ CATAAAAGAATTCGCCGAAGATACTGGTATAGAT 4240125 32 100.0 34 NNNNNNNNNN ................................ ATCAACTAACTAATTAAGGAGTGATCTTTTTGAT 4240191 32 100.0 35 NNNNNNNNNN ................................ ACGTTAACTATTTTATTATTTTCATTTAATGTAAT 4240258 32 100.0 34 NNNNNNNNNN ................................ CCGTATCTGTGTTGGCCTAGTTTTCTTCCAAAGA 4240324 32 100.0 36 NNNNNNNNNN ................................ GCCATTGAGGCCCGGGTGATTGCATGGCTTGCCGGA 4240392 32 100.0 35 NNNNNNNNNN ................................ GGTTAAAAGCCAAACTGTACGACCACATGGTAAAA 4240459 32 100.0 35 NNNNNNNNNN ................................ AATAGTTAGGCTCCTTTTCAATTAATTTTAAGGAG 4240526 32 100.0 33 NNNNNNNNNN ................................ TTAAAAATTCTTTTCTATTATCATTTTTATTAT 4240591 32 100.0 34 NNNNNNNNNN ................................ TGGCTTCTTTTTGGTGCTCTTTATCTAACATCCG 4240657 32 100.0 34 NNNNNNNNNN ................................ GGAATTTCATTATGCACACCACCTTCAATTTAAT 4240723 32 100.0 34 NNNNNNNNNN ................................ CCTTTGGCCGTTTTAACCAGCAAAAAGGCAAAAA 4240789 32 100.0 34 NNNNNNNNNN ................................ ATTATCCACAAAGGCACAGCAACCGATTGCTTTA 4240855 32 100.0 33 NNNNNNNNNN ................................ TTATACTCCAACAACTTTTCATATTCTACTTTA 4240920 32 100.0 34 NNNNNNNNNN ................................ TTTCCAATTAGAATCTTGAAAACTAGCAGACATA 4240986 32 100.0 35 NNNNNNNNNN ................................ CTTCATCTGCTTTTTTCTTATTTTCAATCCAAATT 4241053 32 100.0 34 NNNNNNNNNN ................................ TATGTGATATAATGGTTTCGCTGAGTATGTGAGG 4241119 32 100.0 35 NNNNNNNNNN ................................ AGGTTCCGGGCCTGGAGGTACGCCCGGCGATGCCG 4241186 32 100.0 34 NNNNNNNNNN ................................ CTTTATTTTTATTTGTTTTTGTATTTATTTATTT 4241252 32 100.0 34 NNNNNNNNNN ................................ AAGTGAAGATTTTGATGGGTTAATTTTAGCATTA 4241318 32 100.0 33 NNNNNNNNNN ................................ GAGTACTGCCGGCAGGATGTTGTCACAGAAATG 4241383 32 100.0 34 NNNNNNNNNN ................................ AGCCCATGGGATGGCCAACACCTGGGACGAAATT 4241449 32 100.0 34 NNNNNNNNNN ................................ TGGAAAAGATGCTAACAGCATTTACACCACTATT 4241515 32 100.0 34 NNNNNNNNNN ................................ GTGTCAACCATGACCAATCTTTTGCATTTTCTTT 4241581 32 100.0 34 NNNNNNNNNN ................................ AAGCACTAATGTATTTTTGCAAGGGCTGGCCCAC 4241647 32 100.0 34 NNNNNNNNNN ................................ AATATGAAAATTGGTGGTAGAGCTTTATCAAACG 4241713 32 100.0 35 NNNNNNNNNN ................................ ATATTGGTGCTAGAGAATGTACTAGATATATGTAT 4241780 32 100.0 35 NNNNNNNNNN ................................ ATTACTGGATAATATTATTTTAAGTATGGTAAAAA 4241847 32 100.0 1 NNNNNNNNNN ................................ NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 109 32 34 GTTTCAATCCACGCCCCCGCGCGGGGGGCGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [4,4] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-10.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [66.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [727,170] Score: 0.18/0.18 # # Final direction: R [0.45,5.28 Confidence: HIGH] >NC_021184 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 529607 30 100.0 36 ATTTGTCTTG .............................. CGATATGTAGCATAATATACTTAACGTATTATATTA 529673 30 100.0 34 TATTATATTA .............................. TTCTAGCCACAGCCACGGATCCACCGCGGCTTTC 529737 30 100.0 36 CGCGGCTTTC .............................. AGGGCTAAAAAGCCCCAGAGATTTACCCTCCCCCTC 529803 30 100.0 36 CCTCCCCCTC .............................. ATGTTGCGTGGGTGGTAAAGAAGAACAAAACAATGC 529869 30 100.0 36 AAAACAATGC .............................. ATCTGCCACTGTGCCCTTGTGTACTCTTGCTTGGTT 529935 30 100.0 36 TTGCTTGGTT .............................. ATCAACATTGCTCACTTCCCCCTATTGAAAAATAAA 530001 30 100.0 36 GAAAAATAAA .............................. CTTTTTAAACAGTTTTTCATCTAGTTGCCTGGCCAC 530067 30 100.0 36 GCCTGGCCAC .............................. AAGTAAAACCATGCTCTCGTAAAGTGTCCGGTACAA 530133 30 100.0 35 TCCGGTACAA .............................. AGTGAGGGAGGTGCGATATTTGGAGAGGCCGATTT 530198 30 100.0 35 AGGCCGATTT .............................. CTTGGTAGTTAACTGTTTGCAGGTAGTTTTTTAGA 530263 30 100.0 37 GTTTTTTAGA .............................. ATTACACCGTGGGATGATTATTGCAGCGCATTGGCCA 530330 30 100.0 37 GCATTGGCCA .............................. TCATTACCCCCGTTACCCTTCCTTGGCCTCCCCCGCC 530397 30 100.0 35 CTCCCCCGCC .............................. TTTTTTAGGTCTTCTTTGATGGAGACAACCAATGC 530462 30 100.0 35 CAACCAATGC .............................. AATTTTGTACCCCAGATAATGCGCTCCAGCGCCCT 530527 30 100.0 36 CCAGCGCCCT .............................. ATATAACAAGTGGTCGGCTTTATCTGCGCAATGCAC 530593 30 100.0 37 CGCAATGCAC .............................. TTGGTTCTTATTGGCATTCTCATTCTGAATATCTCCT 530660 30 100.0 35 AATATCTCCT .............................. ATGCTTATCGTAGCGGTGCCATTTATGGGAACGGT 530725 30 100.0 34 TGGGAACGGT .............................. GACTTACAGGCGGCCGGACCCAACTACCTGGAGA 530789 30 100.0 35 TACCTGGAGA .............................. CCTTGCCGTCCTTGGCCGGTGGAGCTATGCTGTAC 530854 30 100.0 35 TATGCTGTAC .............................. ACGAAATAGGATTCAGGGTAGACGTTGGTGGCCTT 530919 30 100.0 36 TGGTGGCCTT .............................. ATGTTTATATCACTGTCTCCGGAAGCGGTGTAAAAG 530985 30 100.0 37 GGTGTAAAAG .............................. TCGGTATAAATCAGGGTGTTTTCCCGAGTAAGCGTAC 531052 30 100.0 36 GTAAGCGTAC .............................. CATTCATCTTTCCACATAAGCTCTCTCGCATCCTGT 531118 30 100.0 34 CGCATCCTGT .............................. ACGTTGATATAACCGAAAAGGACCGTGAGCGGTA 531182 30 100.0 36 GTGAGCGGTA .............................. TTGTGACGCTCTTTGTAATAATGGCAGCGTGGGCAG 531248 30 100.0 35 GCGTGGGCAG .............................. ATCTTTCCAACCCGGCACCATTGATTTGCCTTTAA 531313 30 100.0 36 TTGCCTTTAA .............................. AAGTTTGACCCCGCACTCACTAAGACATACGCATAC 531379 30 100.0 35 ATACGCATAC .............................. ATCTTTGATTTACCCATCACCCGACCTGCCTTTCC 531444 30 100.0 34 CTGCCTTTCC .............................. TATTTCTGATTCCAGCTTGCTTCGGCTGGAAAGT 531508 30 100.0 35 GCTGGAAAGT .............................. ATGCCATAGACTTTTTTAATAGCTTCATAAATAAC 531573 30 100.0 35 CATAAATAAC .............................. CATCACCGCAGGCCAATTTCCAGGCTGTCTGTCAT 531638 30 100.0 36 TGTCTGTCAT .............................. ACCGTTACTCCAATCCTGGCGAGGTAGTATATGATC 531704 30 100.0 36 GTATATGATC .............................. CTGGTTCACTCTGTAAATAGCGGTAAACTCTGTGTA 531770 30 100.0 36 ACTCTGTGTA .............................. CTACCCCCGCCCCCTCTCGTCTAACTCAGCTAAGGC 531836 30 100.0 35 CAGCTAAGGC .............................. TTTAATGCCCGAGCACTGGCCGCCCCGCGTTCCCG 531901 30 100.0 35 CGCGTTCCCG .............................. ATAGCACGATCAAATACCCACAGGCCGAGGTTATA 531966 30 100.0 36 CGAGGTTATA .............................. CTGCCTATTCGGGAGATTTACCGTATTTGGGGAAGA 532032 30 100.0 35 TTGGGGAAGA .............................. AACAACGTCGGCCCAAAGTCACACCTGTCTATAGC 532097 30 100.0 35 TGTCTATAGC .............................. TTTCGAAGAATAGTTTAATAGCCTGGATGTTCCCA 532162 30 100.0 36 GATGTTCCCA .............................. CAGAATTAAGTGGGGCGTGTTTGAGAAGTTGGAGTT 532228 30 100.0 35 AGTTGGAGTT .............................. TGTGAAGATTATTAACCTGATTGGTTGTGTCGATG 532293 30 100.0 34 TGTGTCGATG .............................. GTGGGGGGATGAACACCTGCTTGCCGATGCCCTG 532357 30 100.0 37 CGATGCCCTG .............................. AAAAATTGGAGGTGCGGTAAATGTTAAAAGTGGTTAC 532424 30 100.0 37 AAGTGGTTAC .............................. AACTCCAAAACAAGGAAATGACAGGCAAGCAATTCTC 532491 30 100.0 35 AGCAATTCTC .............................. CGAGAATGTACCAGATGAATTTATTGTGCAGGTAA 532556 30 100.0 36 GTGCAGGTAA .............................. AGCTCAACCACTGGTAACGTGACCGGTATTTTTGAT 532622 30 100.0 37 TATTTTTGAT .............................. TCGTAACGATGACACCCAGTGGCTCGGTCATGTCCAC 532689 30 100.0 35 TCATGTCCAC .............................. ACCAGCAGAAGGCGGACATATCAAACCAGCGTGAG 532754 30 100.0 36 CCAGCGTGAG .............................. AAATCAAGGCGTTACTACTATGATTATGAAGCCATT 532820 30 100.0 35 TGAAGCCATT .............................. ATGGGCAGAAACACCCAATAAATCCAAAGGCAGGC 532885 30 96.7 36 AAAGGCAGGC ............A................. AACATAAGGTTTATGTGATGGGAGGTGAGAAAATGT 532951 30 100.0 36 GAGAAAATGT .............................. TAAAACAAGCCCGACGGTTTGTCAGGTGGGAAGTTT 533017 30 100.0 36 TGGGAAGTTT .............................. ATTCAATATCCCCTTACCTTACCGTCCATCCAAGCA 533083 30 100.0 36 CATCCAAGCA .............................. CTATAAAATAGGGAGGATCAGTATGTTTAACATTGA 533149 30 100.0 36 TTAACATTGA .............................. GAGTACATCCGCGTGGCCCTGGTGGGCTGCACTCTG 533215 30 100.0 35 CTGCACTCTG .............................. GTTGCCGAATATAGCGCAAGTATTAGTAAGGTATA 533280 30 100.0 37 GTAAGGTATA .............................. TGGACAGGATGATGTTGATTGTGGCGATGACCAGTGC 533347 30 100.0 37 TGACCAGTGC .............................. CCTAGTTGATGGAAAGATCGTTCCATTCAACTCTAAC 533414 30 100.0 34 CAACTCTAAC .............................. ATGGACTACAAAATTTTCTACTACGAGATTTCAC 533478 30 100.0 36 GAGATTTCAC .............................. TAAATAAGGCCTTCGGCAACTACCCAAAGGCCAGTA 533544 30 100.0 35 AAGGCCAGTA .............................. CCGAAATTAATGCTGTTATGTCTCCCAAAATGTTT 533609 30 100.0 36 CAAAATGTTT .............................. AACTGATTCTATGGTATCTCTTAATGTGGATCTTGC 533675 30 100.0 36 TGGATCTTGC .............................. GGCGATAGGCAAATGTGTACATTTTGTGAAAATCGA 533741 30 100.0 35 TGAAAATCGA .............................. AGAAGTGGGAGCAGCATAATTACCTAGTGGAGAAA 533806 30 100.0 36 AGTGGAGAAA .............................. CTGTCGTACTTGGTTCTTGCCATTTCTGAACCTTAT 533872 30 100.0 36 TGAACCTTAT .............................. ATGCAGGTTAAATCCTCAACTCCGGAAGGTACTGAC 533938 30 100.0 36 AGGTACTGAC .............................. ATTTCAACCTGGTTATTACCGATTGTCGATATCTAA 534004 30 100.0 35 CGATATCTAA .............................. CCACCTTTCAGCCGACTGGAGGATATCGCTAATTA 534069 30 100.0 37 TCGCTAATTA .............................. TACCATAGCCATCGCATGTCTGTTAAATGGTGATTAC 534136 30 100.0 37 TGGTGATTAC .............................. TTGCTAGTAAAAGCGAATGCGCTTTTATTTTTTACAT 534203 30 100.0 35 TTTTTTACAT .............................. AGTTCACGTATTCCAGATTTCACACGGGTCATTTT 534268 30 100.0 36 GGGTCATTTT .............................. AGTAGATTGGCATGAGCTTCGGGCCTGTGACTATGG 534334 30 100.0 34 GTGACTATGG .............................. ATATCTGGGCGTCTGTCTGCAAAATGAGGGCGAC 534398 30 100.0 36 TGAGGGCGAC .............................. TTTATTGCATTTTTTATTATCAGTGTTTTCATAATT 534464 30 100.0 36 TTTCATAATT .............................. AAATATCCGGCCGCATCCAGAACATCTTCAACGCCC 534530 30 100.0 TTCAACGCCC .............................. GCCTCTAATC ========== ====== ====== ====== ========== ============================== 76 30 35 GTGGAACCAACACATTTGATGTATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-2.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [180,163] Score: 0/0.18 # # Final direction: F [5.18,0.37 Confidence: HIGH] >NC_021184 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 537907 30 100.0 36 ATTCACAGTA .............................. CGTCAATGGGAGCTATCGGCTCAACCGGCTCATTTT 537973 30 100.0 36 GGCTCATTTT .............................. TGTTCAAAAACAACCTGATCAACTGACTGTCTGCCA 538039 30 100.0 36 CTGTCTGCCA .............................. ACCCAAATGATTACCTGCTTAAACTGGTTCAGCCAT 538105 30 100.0 36 GTTCAGCCAT .............................. ATTTATACAAGAGAGTGGGTTATTACTAGGTCCTTG 538171 30 100.0 36 TAGGTCCTTG .............................. AGCAGCTAATGAATTTGCAAATCGGCCAGCGCTGAC 538237 30 100.0 34 CAGCGCTGAC .............................. AATATCTTGGCCCTTCTTGCCTCGCTTGCATCAA 538301 30 100.0 37 CTTGCATCAA .............................. TTTTGCAACGGACATAAATTGTTGCAGTCCGGTGTGG 538368 30 100.0 36 TCCGGTGTGG .............................. ACGTTACCTTGACGTGCCGCAGGTTAGTATTATTCC 538434 30 100.0 35 GTATTATTCC .............................. AAATAGAACGCTTTTCCGCACTCCGGGCAGCATGG 538499 30 100.0 34 GGCAGCATGG .............................. TTCAAGTCTCTGGTGGAACTCCCCGAGTTTGAAC 538563 30 100.0 36 GAGTTTGAAC .............................. AGGGACACAATGCTATTCGCACGTTGCGTATTACAA 538629 30 100.0 CGTATTACAA .............................. GTGTAGATGAT ========== ====== ====== ====== ========== ============================== 12 30 35 GTGGAACCAACACATTTGATGTATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-2.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [61.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [468,171] Score: 0.18/0.18 # # Final direction: F [4.95,0.37 Confidence: HIGH] >NC_021184 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 547994 30 100.0 35 GTTCGGTCTG .............................. TGCAGACATTGCGTTTTCATAAACCACTTTAGCGC 548059 30 100.0 36 ACTTTAGCGC .............................. GTCTGAGCAAACATTGCCACCTGCTCAACCCTTGGG 548125 30 100.0 36 AACCCTTGGG .............................. CCAATACTGCATATCCTTGGCAAAGGTGAAATGGAC 548191 30 100.0 36 TGAAATGGAC .............................. GTGGTTCGCGAACTTCTATTTAAGTGGACTTGACCA 548257 30 100.0 35 GACTTGACCA .............................. AGCTAATGTAAGTGCAAAGATTGGATTAATTAGTT 548322 30 100.0 37 TTAATTAGTT .............................. ACCGGTTAAGCAAAAAACTGAACAGGTAGTTAAGAAG 548389 30 100.0 36 AGTTAAGAAG .............................. CCGTTTACACCGAGGTAACCGATGAAGCCAGGAAGT 548455 30 100.0 36 GCCAGGAAGT .............................. AAACCTTGGGGATGCCAGTAGCCTACGGTGAGTTTG 548521 30 100.0 35 GGTGAGTTTG .............................. TCCTGAGTAGAAAGTGCCTGACGTATAGGCATAAT 548586 30 100.0 TAGGCATAAT .............................. ACTACAATGG ========== ====== ====== ====== ========== ============================== 10 30 35 GTGGAACCAACACATTTGATGTATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-2.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [48.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [936,467] Score: 0.18/0.18 # # Final direction: F [4.68,0.64 Confidence: HIGH] >NC_021184 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 832966 30 100.0 37 AACACGACGG .............................. TGTTGTTGGGCGCGGGATTCCATTTGCCCGAAATATC 833033 30 100.0 36 CCGAAATATC .............................. CCGCCGAGGCCAATTCATCTAAACCGGTCCCGCCGA 833099 30 100.0 36 GTCCCGCCGA .............................. ACACATCTGGCAAGGACACAGATTCTGGCTTTAGCA 833165 30 100.0 36 GGCTTTAGCA .............................. CCGCCGAGGCCAATTCATCTAAACCGGTCCCGCCGA 833231 30 100.0 36 GTCCCGCCGA .............................. ACACATCTGGCAAGGACACAGATTCTGGCTTCAGCA 833297 30 100.0 37 GGCTTCAGCA .............................. CAAGCAACAATCGTCCAGAGAAACCACACTACTGAAA 833364 30 100.0 36 ACTACTGAAA .............................. TCTAATATTCTATTCAGCACTGTGGCAAGCTCCCCC 833430 30 100.0 37 AAGCTCCCCC .............................. TAGGTCCGGTATACCTTATCAGGCACAACTTCCCGCC 833497 30 100.0 37 ACTTCCCGCC .............................. CTGGACAATCGTCACGCGCCTTGCGTTGACCTTTTCT 833564 30 100.0 39 GACCTTTTCT .............................. TGCGCTATGACGGTCTCACTGCAACAGCAGACCACCTCG 833633 30 100.0 37 GACCACCTCG .............................. TTTTTAATTCTATCTCTATCTTGAATTAAGCGTAGTT 833700 30 100.0 36 AAGCGTAGTT .............................. TTTTTGGAGATGGAAACAGGCGTAATTTTGATCCGG 833766 30 100.0 37 TTTGATCCGG .............................. CTGTCCTATATGTGGAATTAGATTCACAGGGATCAAC 833833 30 100.0 35 AGGGATCAAC .............................. TATCTCGCACCCGGGGCAATGTTTTAGCCAGCGGG 833898 30 100.0 38 AGCCAGCGGG .............................. TTGCGCAGAAGTCGTATACCTCCTCTGTCCTAGCGCCA 833966 30 100.0 36 CCTAGCGCCA .............................. TTAATTCTTCTGCAATCATCAAATTTTACTTCTCGC 834032 30 100.0 36 TACTTCTCGC .............................. TCATTGTGCGGGTCATTTCCAAACCCCATTCCACGT 834098 30 100.0 37 CATTCCACGT .............................. GCGTATCACCCACTAGGTGCTCACCTCTTTGTGTTCT 834165 30 100.0 36 TTTGTGTTCT .............................. ATGCCCTGTGCAAACATACTTACAAAGTTTGGACCC 834231 30 100.0 37 GTTTGGACCC .............................. CGCTCTCGGTTGATAACCTGTACCGCAAGTGGAAGGC 834298 30 100.0 35 AGTGGAAGGC .............................. AGCTCCTTCATAACTCCGATTGTTGCCCCGGCCAG 834363 30 100.0 CCCCGGCCAG .............................. TTTGTGTAAT ========== ====== ====== ====== ========== ============================== 22 30 36 GTTTTTAGACTACCTATGAGGAATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: F [-1.00,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [56.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [181,82] Score: 0.18/0.18 # # Final direction: F [5.55,0.27 Confidence: HIGH] >NC_021184 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 550376 30 100.0 35 TGGTTTTTAA .............................. ATGAGTACGTGAAGGCCAATGAAATCAATAAAATA 550441 30 100.0 35 CAATAAAATA .............................. ATCTTACCCTTAACCCAAATTAAAGTGTTTAATTT 550506 30 100.0 37 TGTTTAATTT .............................. TTATTTCCTGGTTGCGTTTGATTCGGCTGGGTGTAAG 550573 30 100.0 35 TGGGTGTAAG .............................. AGAATAGCGGGTGGAACGCCGATATATGCAAACTA 550638 30 100.0 36 ATGCAAACTA .............................. ATTGATATGGAAACAGGAGAAAGAAAAAAGAATGAA 550704 30 100.0 36 AAAGAATGAA .............................. AGGAATACACCAGGCCCGGCCAAGTCTTTGGCGTGT 550770 30 100.0 35 TTTGGCGTGT .............................. GTGAGCAGAGAAAACAAAAAGCCTCTTTCCTCTAA 550835 30 100.0 35 TTTCCTCTAA .............................. GCAATTCCTGCGCTTTCTCTTTAGTTGGCACGATC 550900 30 96.7 35 TGGCACGATC .................A............ TGGTGTAATTGAAGCAGAAATAACCAAAGATGGAT 550965 30 100.0 36 AAAGATGGAT .............................. ACATACAAACCGGTTGGACTAGAAGGCGGGGGATCA 551031 30 100.0 36 CGGGGGATCA .............................. TTAGTTAAATCTCTCCTTTATTTAAAAGTTACTACA 551097 30 100.0 AGTTACTACA .............................. TAATTATGAGCAACAAGGAAAGGCAAAAGCGACAT ========== ====== ====== ====== ========== ============================== 12 30 35 GTGGAACCAACACATTTGATGTATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [0.00,-2.90] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [129,214] Score: 0/0.18 # # Final direction: F [4.91,0.37 Confidence: HIGH] >NC_021192 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3115027 36 100.0 45 AGTCGTCGTA .................................... TCGRCGCAYTGGGACATCGAAACAYCGACGCGAAGGGCGGTTCAA 3115108 36 97.2 40 GGCGGTTCAA .................T.................. TGGGAGGATGTCACTCGGACATAGCTGTCATCGGCGGKGT 3115184 36 97.2 40 TCGGCGGKGT ................................G... ATGGAGCAGTAGCGTGGGTGTGGTGTGGCGGGSGRTATGC 3115260 36 94.4 37 GGSGRTATGC ....Y...............K............... TGCTGCACCTCCCGCACCCGGTGCGATTCTGCGTCCA 3115333 36 97.2 36 TCTGCGTCCA .............................C...... CCCGATAGTCGCGCTCGTCCATGTCCCACCATGAGG 3115405 36 100.0 35 CACCATGAGG .................................... TACCTGATAGAAGCCGGAAAGCTCCGTGCCGTCAG 3115476 36 100.0 38 GTGCCGTCAG .................................... AGGGCACTGGACCTGTATGAGGCACAGATGGCGTACTA 3115550 36 100.0 TGGCGTACTA .................................... CCGGATCGGT ========== ====== ====== ====== ========== ==================================== 8 36 38 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [150,846] Score: 0.18/0.18 # # Final direction: R [0,1.33 Confidence: HIGH] >NC_021192 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3115859 36 100.0 37 GAGTGATAAA .................................... CGGACTTGATCGACGCGAACCTGTCTGACGCGAACCT 3115932 36 100.0 37 ACGCGAACCT .................................... GGCTGGWAAAGGGCGCGGGGCAACCGCATCGTCAAGA 3116005 36 100.0 36 ATCGTCAAGA .................................... GCGTTGTGGTCGTGTCGTGGAGCCTGTATTTCGCTG 3116077 36 97.2 36 TATTTCGCTG ....Y............................... CATTAGTTGGTGTTGTGATCGCTAAACGCCGGGGCA 3116149 36 100.0 38 CGCCGGGGCA .................................... CTATCCGCGGGAAGAGATCACGAATCCGGCGTCGAAGG 3116223 36 100.0 38 GCGTCGAAGG .................................... ATGCTRAKCYGMKGCGCCGGATGATGGTGGTGCTGAAG 3116297 36 100.0 GGTGCTGAAG .................................... TGACAGGGTGCGGTGGTCGCTGATCGGCTCCCCGA ========== ====== ====== ====== ========== ==================================== 7 36 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [982,99] Score: 0.18/0.18 # # Final direction: F [0.86,0.74 Confidence: LOW] >NC_021192 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3117726 36 100.0 40 NNNNNNNNNN CA.G...GGG.GGT..A................... TCGCGGCGAGCACGTCTCACCCAGCAGGCGGTGAGGTTGG 3117802 36 100.0 39 NNNNNNNNNN .................................... ACGGACGAGCTGGACCGCATCAGCGATGCTGAGCTGAGG 3117877 36 100.0 37 NNNNNNNNNN .................................... TTGTCTCAATCGTGCCGTCTGCGGTGACACGCTCCAA 3117950 36 100.0 37 NNNNNNNNNN .................................... TCACCAGGATCAGCGCCAAGCCAGTTAGCGCAATCCA 3118023 36 100.0 36 NNNNNNNNNN .................................... CTCCCGGACCATCTGCAGCTCGCCCGGGTCCATGCG 3118095 36 100.0 37 NNNNNNNNNN .................................... CGGAGTCATCCGCGCGGGCCGGCGCGATTGTTGCCGG 3118168 36 100.0 36 NNNNNNNNNN .................................... YGGMGATTTACGACGCTGACGGGAACTCGTGCGAAT 3118240 36 100.0 25 NNNNNNNNNN ................................TCCG CGAAATTCACTGCGCGTTATTCAAG 3118301 36 100.0 41 NNNNNNNNNN .................................... CCGAGCCGACCATCCGCATCACACCGAAAGGGTTGGCGCAA 3118378 36 100.0 36 NNNNNNNNNN .................................... ACGTGGGGAGAGGGAATGGCAATGATGGTCGACGAA 3118450 36 100.0 40 NNNNNNNNNN .................................... CTCGGACAGCATCTCCCCGGGCGGGCAGCAGATATCCCAT 3118526 36 100.0 41 NNNNNNNNNN .................................... CGRCCCGTSGCCGCCAGGTTGCCGCCGCCGTTGCTCACCTG 3118603 36 100.0 37 NNNNNNNNNN .................................... CCGGAAGTCAACTAGAGCGGGTGTCGAACGCTGCCCG 3118676 36 100.0 35 NNNNNNNNNN .................................... ATGCGAATCCGCTGTCAGCACATGGGATTCCGAGT 3118747 36 100.0 37 NNNNNNNNNN .................................... CTAGGCGGCCCCGGCGAGGCTGGGGGCGGTTTCACGC 3118820 36 100.0 38 NNNNNNNNNN .................................... CAGCGCAGACGGCAGCCCCGAGTACTCGCTCTCCTCAG 3118894 36 100.0 37 NNNNNNNNNN .................................... AGGCTGAAATTGAAGCCGGAAATGACGACGCATTGGT 3118967 36 100.0 35 NNNNNNNNNN .................................... CTAAGCCCGCTAATCCCGCACAAGTGGTCAGAAAA 3119038 36 100.0 39 NNNNNNNNNN .................................... CTGATGATTGGTCGGCGTATGACGTGCTACTGAGGTGTT 3119113 36 100.0 38 NNNNNNNNNN ...............................M.... TMGMWGCGCGAGGTCAMTGGWAGCAYGGCGMTGTGCGA 3119187 36 100.0 36 NNNNNNNNNN .................................... TTGGTCAAAAGCTGTCGCCCAAGCATGAGGCAAAAA 3119259 36 100.0 42 NNNNNNNNNN .................................... ACGACTAGGGGAGCGTGATCCAGAGCCGGCGAYCSTCKAYGA 3119337 36 100.0 48 NNNNNNNNNN ..........Y......................... GTGCAWBHWCTCTCTCTKSCSWKGTCGAAGGTGCAACATCGRTKTTAA 3119421 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 24 36 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [14-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [43.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [36,50] Score: 0/0.18 # # Final direction: R [0,1.42 Confidence: HIGH] >NC_021193 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3108469 36 100.0 38 AGTCGTCGTA .................................... TCGGGCACGGCCGAAACACCGCGCGAAGGGCGGTTCAA 3108543 36 97.2 40 GGCGGTTCAA .................T.................. TGGGAGGATGTCACTCGGACATAGCTGTCATCGGCGGTGT 3108619 36 97.2 40 TCGGCGGTGT ................................G... ATGGAGCAGTAGCGTGGCTGTGGTGTGGCGGGCGATATGC 3108695 36 100.0 37 GGCGATATGC .................................... TGCTGCACCTCCCGCACCCGGTGCGATTCTGCGTCCA 3108768 36 97.2 36 TCTGCGTCCA .............................C...... CCCGATAGTCGCGCTCGTCCATGTCCCACCATGAGG 3108840 36 100.0 35 CACCATGAGG .................................... TACCTGATAGAAGCCGGAAAGCTCCGTGCCGTCAG 3108911 36 100.0 38 GTGCCGTCAG .................................... AGGGCACTGGACCTGTATGAGGCACAGATGGCGTACTA 3108985 36 100.0 40 TGGCGTACTA .................................... CCGGATCGGTTACCCACGCCGATTTACTGGCCATCGTCGG 3109061 36 100.0 35 CCATCGTCGG .................................... ACTTGCGCGCACAACGCATCCGCCATCCACGGGGC 3109132 36 100.0 37 TCCACGGGGC .................................... CTGAAAGGGGGACTGTGGACGAGTTCGCGCTCAAAAT 3109205 36 100.0 37 CGCTCAAAAT .................................... TTGACACGCCGATACCTATTTGGTCGGGAGTGATAAA 3109278 36 100.0 37 GAGTGATAAA .................................... CGGACTTGATCGACGCGAACCTGTCTGACGCGAACCT 3109351 36 100.0 37 ACGCGAACCT .................................... GGCTGGAAAAGGGCGCGGGGCAACCGCATCGTCAAGA 3109424 36 100.0 ATCGTCAAGA .................................... GCGTTGTGGT ========== ====== ====== ====== ========== ==================================== 14 36 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [150,378] Score: 0.18/0.18 # # Final direction: R [0,1.33 Confidence: HIGH] >NC_021193 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 3109568 32 100.0 42 CGCCGGGGCA ................................ CGACCTATCCGCGGGAAGAGATCACGAATCCGGCGTCGAAGG 3109642 32 100.0 42 GCGTCGAAGG ................................ CGACATGCTGAGCTGAGGCGCCGGATGATGGTGGATGCGAAG 3109716 32 100.0 GGATGCGAAG ................................ GCTGCGGATGTGGTGCTGGATTTCGA ========== ====== ====== ====== ========== ================================ 3 32 42 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGA # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [1,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [1249,90] Score: 0.18/0.18 # # Final direction: R [0.45,0.74 Confidence: LOW] >NC_021193 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3111194 36 100.0 37 CCCGATATGG .................................... CGGCTGGCTGGACCGCATCAGCGATGCTGAGCTGAGG 3111267 36 100.0 37 TGAGCTGAGG .................................... TTGTCTCAATCGTGCCGTCTGCGGTGACACGCTCCAA 3111340 36 100.0 36 CACGCTCCAA .................................... CACCAGGATCAGCGCCAAGCCAGTTAGCGCAATCCA 3111412 36 100.0 36 GCGCAATCCA .................................... CTCCCGGACCATCTGCAGCTCGCCCGGGTCCATGCG 3111484 36 100.0 37 GGTCCATGCG .................................... CGGAGTCATCCGCGCGGGCCGGCGCGATTGTTGCCGG 3111557 36 100.0 36 TTGTTGCCGG .................................... TGGCGATTTACGACGCTGACGGGAACTCGTGCGAAT 3111629 36 88.9 29 TCGTGCGAAT ................................---- TCCGCGAAATTCACTGCGCGTTATTCAAG 3111694 36 100.0 41 GTTATTCAAG .................................... CCGAGCCGACCATCCGCATCACACCGAAAGGGTTGGCGCAA 3111771 36 100.0 36 GTTGGCGCAA .................................... ACGTGGGGAGAGGGAATGGCAATGATGGTCGACGAA 3111843 36 100.0 40 GGTCGACGAA .................................... CTCGGACAGCATCTCCCCGGGCGGGCAGCAGATATCCCAT 3111919 36 100.0 41 GATATCCCAT .................................... CGACCCGTGGCCGCCAGGTTGCCGCCGCCGTTGCTCACCTG 3111996 36 100.0 37 TGCTCACCTG .................................... CCGGAAGTCAACTAGAGCGGGTGTCGAACGCTGCCCG 3112069 36 100.0 35 ACGCTGCCCG .................................... ATGCGAATCCGCTGTCAGCACATGGGATTCCGAGT 3112140 36 100.0 37 GATTCCGAGT .................................... CTAGGCGGCCCCGGCGAGGCTGGGGGCGGTTTCACGC 3112213 36 100.0 36 GGTTTCACGC .................................... GAGGAGACGGCAGCCCCGAGTACTCGCTCTCCTCAG 3112285 36 100.0 37 CTCTCCTCAG .................................... AGGCTGAAATTGAAGCCGGAAATGACGACGCATTGGT 3112358 36 100.0 35 ACGCATTGGT .................................... CTAAGCCCGCTAATCCCGCACAAGTGGTCAGAAAA 3112429 36 100.0 39 GGTCAGAAAA .................................... CTGATGATTGGTCGGCGTATGACGTGCTACTGAGGTGTT 3112504 36 100.0 32 CTGAGGTGTT .................................... TAGAAGGCGATCACTGGAAGCCGCGCTTGCGA 3112572 36 100.0 37 GCGCTTGCGA .................................... TTCGGTCAAAAGCTGTCGCCCAAGCATGAGGCAAAAA 3112645 36 100.0 41 GAGGCAAAAA .................................... ACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTATG 3112722 36 97.2 37 ACCCTCTATG ..........T......................... GTGAAGAATTCCGGGTTGCAGTGCAACACGGTTTTAA 3112795 36 100.0 ACGGTTTTAA .................................... TCTATGGACA ========== ====== ====== ====== ========== ==================================== 23 36 36 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [33.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [98,46] Score: 0.18/0.18 # # Final direction: R [0.18,1.01 Confidence: HIGH] >NC_021193 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3111132 36 100.0 26 NNNNNNNNNN CA.G...GGG.GGT..A................... TCGCAGCGTCGCCGTCCCCGATATGG 3111194 36 100.0 37 NNNNNNNNNN .................................... CGGCTGGCTGGACCGCATCAGCGATGCTGAGCTGAGG 3111267 36 100.0 37 NNNNNNNNNN .................................... TTGTCTCAATCGTGCCGTCTGCGGTGACACGCTCCAA 3111340 36 100.0 36 NNNNNNNNNN .................................... CACCAGGATCAGCGCCAAGCCAGTTAGCGCAATCCA 3111412 36 100.0 36 NNNNNNNNNN .................................... CTCCCGGACCATCTGCAGCTCGCCCGGGTCCATGCG 3111484 36 100.0 37 NNNNNNNNNN .................................... CGGAGTCATCCGCGCGGGCCGGCGCGATTGTTGCCGG 3111557 36 100.0 36 NNNNNNNNNN .................................... TGGCGATTTACGACGCTGACGGGAACTCGTGCGAAT 3111629 36 100.0 25 NNNNNNNNNN ................................TCCG CGAAATTCACTGCGCGTTATTCAAG 3111690 36 100.0 41 NNNNNNNNNN .................................... CCGAGCCGACCATCCGCATCACACCGAAAGGGTTGGCGCAA 3111767 36 100.0 36 NNNNNNNNNN .................................... ACGTGGGGAGAGGGAATGGCAATGATGGTCGACGAA 3111839 36 100.0 40 NNNNNNNNNN .................................... CTCGGACAGCATCTCCCCGGGCGGGCAGCAGATATCCCAT 3111915 36 100.0 41 NNNNNNNNNN .................................... CGACCCGTGGCCGCCAGGTTGCCGCCGCCGTTGCTCACCTG 3111992 36 100.0 37 NNNNNNNNNN .................................... CCGGAAGTCAACTAGAGCGGGTGTCGAACGCTGCCCG 3112065 36 100.0 35 NNNNNNNNNN .................................... ATGCGAATCCGCTGTCAGCACATGGGATTCCGAGT 3112136 36 100.0 37 NNNNNNNNNN .................................... CTAGGCGGCCCCGGCGAGGCTGGGGGCGGTTTCACGC 3112209 36 100.0 36 NNNNNNNNNN .................................... GAGGAGACGGCAGCCCCGAGTACTCGCTCTCCTCAG 3112281 36 100.0 37 NNNNNNNNNN .................................... AGGCTGAAATTGAAGCCGGAAATGACGACGCATTGGT 3112354 36 100.0 35 NNNNNNNNNN .................................... CTAAGCCCGCTAATCCCGCACAAGTGGTCAGAAAA 3112425 36 100.0 39 NNNNNNNNNN .................................... CTGATGATTGGTCGGCGTATGACGTGCTACTGAGGTGTT 3112500 36 100.0 32 NNNNNNNNNN .................................... TAGAAGGCGATCACTGGAAGCCGCGCTTGCGA 3112568 36 100.0 37 NNNNNNNNNN .................................... TTCGGTCAAAAGCTGTCGCCCAAGCATGAGGCAAAAA 3112641 36 100.0 41 NNNNNNNNNN .................................... ACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTATG 3112718 36 100.0 37 NNNNNNNNNN ..........T......................... GTGAAGAATTCCGGGTTGCAGTGCAACACGGTTTTAA 3112791 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 24 36 36 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [14-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [36,50] Score: 0/0.18 # # Final direction: R [0,1.42 Confidence: HIGH] >NC_021194 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3105094 36 100.0 38 AGTCGTCGTA .................................... TCGGGCACGGCCGAAACACCGCGCGAAGGGCGGTTCAA 3105168 36 97.2 40 GGCGGTTCAA .................T.................. TGGGAGGATGTCACTCGGACATAGCTGTCATCGGCGGTGT 3105244 36 97.2 40 TCGGCGGTGT ................................G... ATGGAGCAGTAGCGTGGCTGTGGTGTGGCGGGCGATATGC 3105320 36 100.0 37 GGCGATATGC .................................... TGCTGCACCTCCCGCACCCGGTGCGATTCTGCGTCCA 3105393 36 100.0 36 TCTGCGTCCA .................................... CCCGATAGTCGCGCTCGTCCATGTCCCACCATGAGG 3105465 36 100.0 35 CACCATGAGG .................................... TACCTGATAGAAGCCGGAAAGCTCCGTGCCGTCAG 3105536 36 100.0 38 GTGCCGTCAG .................................... AGGGCACTGGACCTGTATGAGGCACAGATGGCGTACTA 3105610 36 100.0 40 TGGCGTACTA .................................... CCGGATCGGTTACCCACGCCGATTTACTGCTCGTCGTCGG 3105686 36 100.0 39 TCGTCGTCGG .................................... TACTCTCAACCGCGCCAACGCATCCGCCATCCACGGGGC 3105761 36 100.0 35 TCCACGGGGC .................................... CTGAAAGGGGGACGTGGACGAGTTCGCGGCAAAAT 3105832 36 100.0 37 GCGGCAAAAT .................................... TTGACACGCCGATACCTATTTGGTCGGGAGTGATAAA 3105905 36 100.0 37 GAGTGATAAA .................................... CGGACTTGATCGACGCGAACCTGTCTGACGCGAACCT 3105978 36 100.0 37 ACGCGAACCT .................................... GGCTGGAAAAGGGCGCGGGGCAACCGCATCGTCAAGA 3106051 36 100.0 36 ATCGTCAAGA .................................... GCGTTGTGGTCGTGTCGTGGAGCCTGTATTTCGCTG 3106123 36 100.0 36 TATTTCGCTG .................................... CATTAGTTGGTGTTGTGATCGCTAAACGCCGGGGCA 3106195 36 100.0 38 CGCCGGGGCA .................................... CTATCCGCGGGAAGAGATCACGAATCCGGCGTCGAAGG 3106269 36 100.0 GCGTCGAAGG .................................... ATGCTGAGCT ========== ====== ====== ====== ========== ==================================== 17 36 37 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [38.3-36.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [150,173] Score: 0/0.18 # # Final direction: R [0,1.15 Confidence: HIGH] >NC_021194 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3107772 36 100.0 39 NNNNNNNNNN CA.G...GGG.GGT..A................... TCGCGGCGAGCACGTCCACCCAGCAGGCGGTGAGGTTGG 3107847 36 100.0 39 NNNNNNNNNN .................................... ACGGACGAGCTGGACCGCATCAGCGATGCTGAGCTGAGG 3107922 36 100.0 37 NNNNNNNNNN .................................... TTGTCTCAATCGTGCCGTCTGCGGTGACACGCTCCAA 3107995 36 100.0 37 NNNNNNNNNN .................................... CACCAGGATCAGCGCCAAGCCAGTTACGCAATTACCA 3108068 36 100.0 36 NNNNNNNNNN .................................... CTCCCGGACCATCTGCAGCTCGCCCGGGTCCATGCG 3108140 36 100.0 37 NNNNNNNNNN .................................... CGGAGTCATCCGCGCGGGCCGGCGCGATTGTTGCCGG 3108213 36 100.0 36 NNNNNNNNNN .................................... TGGCGATTTACGACGCTGACGGGAACTCGTGCGAAT 3108285 36 100.0 25 NNNNNNNNNN ................................TCCG CGAAATTCACTGCGCGTTATTCAAG 3108346 36 100.0 41 NNNNNNNNNN .................................... CCGAGCCGACCATCCGCATCACACCGAAAGGGTTGGCGCAA 3108423 36 100.0 36 NNNNNNNNNN .................................... ACGTGGGGAGAGGGAATGGCAATGATGGTCGACGAA 3108495 36 100.0 40 NNNNNNNNNN .................................... CTCGGACAGCATCTCCCCGGGCGGGCAGCAGATATCCCAT 3108571 36 100.0 41 NNNNNNNNNN .................................... CGACCCGTGGCCGCCAGGTTGCCGCCGCCGTTGCTCACCTG 3108648 36 100.0 37 NNNNNNNNNN .................................... CCGGAAGTCAACTAGAGCGGGTGTCGAACGCTGCCCG 3108721 36 100.0 35 NNNNNNNNNN .................................... ATGCGAATCCGCTGTCAGCACATGGGATTCCGAGT 3108792 36 100.0 37 NNNNNNNNNN .................................... CTAGGCGGCCCCGGCGAGGCTGGGGGCGGTTTCACGC 3108865 36 100.0 38 NNNNNNNNNN .................................... CAGCGCAGACGGCAGCCCCGAGTACTCGCTCTCCTCAG 3108939 36 100.0 35 NNNNNNNNNN .................................... AGGCTGAAATTGAAGCCGGAAATGCGTCGGATGGT 3109010 36 100.0 35 NNNNNNNNNN .................................... CTAAGCCCGCTAATCCCGCACAAGTGGTCAGAAAA 3109081 36 100.0 39 NNNNNNNNNN .................................... CTGATGATTGGTCGGCGTATGACGTGCTACTGAGGTGTT 3109156 36 100.0 31 NNNNNNNNNN .................................... AGAAGGCGATCACTGGAAGCCGCGCTTGCGA 3109223 36 100.0 37 NNNNNNNNNN .................................... TTCGGTCAAAAGCTGTCGCCCAAGCATGAGGCAAAAA 3109296 36 100.0 41 NNNNNNNNNN .................................... ACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTATG 3109373 36 100.0 38 NNNNNNNNNN .................................... GTGCAAGAATTCCGGGTTGCAGTGCAACACGGTTTTAA 3109447 36 100.0 1 NNNNNNNNNN .................................... NNNNNNNNNN ========== ====== ====== ====== ========== ==================================== 24 36 36 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [46.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [36,50] Score: 0/0.18 # # Final direction: R [0,1.42 Confidence: HIGH] >NC_021194 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 3107847 36 100.0 39 GTGAGGTTGG .................................... ACGGACGAGCTGGACCGCATCAGCGATGCTGAGCTGAGG 3107922 36 100.0 37 TGAGCTGAGG .................................... TTGTCTCAATCGTGCCGTCTGCGGTGACACGCTCCAA 3107995 36 100.0 37 CACGCTCCAA .................................... CACCAGGATCAGCGCCAAGCCAGTTACGCAATTACCA 3108068 36 100.0 36 GCAATTACCA .................................... CTCCCGGACCATCTGCAGCTCGCCCGGGTCCATGCG 3108140 36 100.0 37 GGTCCATGCG .................................... CGGAGTCATCCGCGCGGGCCGGCGCGATTGTTGCCGG 3108213 36 100.0 36 TTGTTGCCGG .................................... TGGCGATTTACGACGCTGACGGGAACTCGTGCGAAT 3108285 36 88.9 29 TCGTGCGAAT ................................---- TCCGCGAAATTCACTGCGCGTTATTCAAG 3108350 36 100.0 41 GTTATTCAAG .................................... CCGAGCCGACCATCCGCATCACACCGAAAGGGTTGGCGCAA 3108427 36 100.0 36 GTTGGCGCAA .................................... ACGTGGGGAGAGGGAATGGCAATGATGGTCGACGAA 3108499 36 100.0 40 GGTCGACGAA .................................... CTCGGACAGCATCTCCCCGGGCGGGCAGCAGATATCCCAT 3108575 36 100.0 41 GATATCCCAT .................................... CGACCCGTGGCCGCCAGGTTGCCGCCGCCGTTGCTCACCTG 3108652 36 100.0 37 TGCTCACCTG .................................... CCGGAAGTCAACTAGAGCGGGTGTCGAACGCTGCCCG 3108725 36 100.0 35 ACGCTGCCCG .................................... ATGCGAATCCGCTGTCAGCACATGGGATTCCGAGT 3108796 36 100.0 37 GATTCCGAGT .................................... CTAGGCGGCCCCGGCGAGGCTGGGGGCGGTTTCACGC 3108869 36 100.0 38 GGTTTCACGC .................................... CAGCGCAGACGGCAGCCCCGAGTACTCGCTCTCCTCAG 3108943 36 100.0 35 CTCTCCTCAG .................................... AGGCTGAAATTGAAGCCGGAAATGCGTCGGATGGT 3109014 36 100.0 35 GTCGGATGGT .................................... CTAAGCCCGCTAATCCCGCACAAGTGGTCAGAAAA 3109085 36 100.0 39 GGTCAGAAAA .................................... CTGATGATTGGTCGGCGTATGACGTGCTACTGAGGTGTT 3109160 36 100.0 31 CTGAGGTGTT .................................... AGAAGGCGATCACTGGAAGCCGCGCTTGCGA 3109227 36 100.0 37 GCGCTTGCGA .................................... TTCGGTCAAAAGCTGTCGCCCAAGCATGAGGCAAAAA 3109300 36 100.0 41 GAGGCAAAAA .................................... ACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTATG 3109377 36 100.0 38 ACCCTCTATG .................................... GTGCAAGAATTCCGGGTTGCAGTGCAACACGGTTTTAA 3109451 36 100.0 ACGGTTTTAA .................................... TCTATGGACA ========== ====== ====== ====== ========== ==================================== 23 36 36 GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [2,12] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [33.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [111,46] Score: 0.18/0.18 # # Final direction: R [0.18,1.42 Confidence: HIGH] >NC_021194 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 3927244 37 100.0 53 NNNNNNNNNN TGC..........AA....T........G........ ACCTGCGGACAAGTCGTCGCCGGGGGTGCTGGCATCAGCTTCAGCAACGGCAG 3927334 37 100.0 47 NNNNNNNNNN ........................G...GTG...... ACCGGGGGCGACGGCGGCAACGCAGGCACCGGCGCCGGCGACCCCGG 3927418 37 100.0 35 NNNNNNNNNN ...A................................. AGCGGCGGGGCCGGCGGTAGCGGCGGGGCCAACTT 3927490 37 100.0 35 NNNNNNNNNN ..................................... AAAGGCGGCCTAAACACCGACGGACTCAGCAGCGC 3927562 37 100.0 32 NNNNNNNNNN ..C.A................................ AAAGGCGGCACCGGCGGGGCCGGCGACGACTC 3927631 37 100.0 53 NNNNNNNNNN .GC......G...........A.....GG........ AACGCCGGCGCCGGCGGCCTAGCCAACACCGGCGGCACCGCAGGCAACGCGGG 3927721 37 100.0 41 NNNNNNNNNN ..T......TGA.......CAA.....T.A....... CAAGGAGACAGCGGTTCCGGATTGGGCGGCCAGCCCGGCTT 3927799 37 100.0 35 NNNNNNNNNN TGC......GG.........AA.....GG.......T AGCAGCGGTGCCGGCGGCACCAACGGCTCCGGCGG 3927871 37 100.0 35 NNNNNNNNNN .GC......GG.......ACAA......G....G..T GCTGGCATCAGCTTCAGCAACGGCAGCAACGGCGG 3927943 37 100.0 47 NNNNNNNNNN ..C............G...GTG...........G... GACGGCGGCAACGCAGGCACCGGCGCCGGCGACCCCGGCAAAGGCGG 3928027 37 100.0 35 NNNNNNNNNN ..C..........................G......G GCCGGCGGTAGCGGCGGGGCCAACTTCAACGGCGG 3928099 37 100.0 71 NNNNNNNNNN ..C.................................. AAAGGCGGCATGGGCGGCATCGCTGGCGACGGCGGGCCCGGCGGTGACGGCGGCAACGCCGGGGTCGGAGG 3928207 37 100.0 53 NNNNNNNNNN A..A.........AA.....A........G......G ACCGGCGGCACAGGCGGGGCCGGCGGCAACGCCGGCGCCGGCGGCCTAGCCAA 3928297 37 100.0 86 NNNNNNNNNN ..C...........CA....A..CG....T......T GACGGCGGCCAAGGCGGTAACGGCGGCCAAGGAGACAGCGGTTCCGGATTGGGCGGCCAGCCCGGCTTTGCCGGCGGCCCCGGCGG 3928420 37 100.0 68 NNNNNNNNNN ...A.....GG.........A..C............. ACCAACGGCTCCGGCGCCGGCGGGGCCGGCGGACAAGGCGGCGCCGGGGGTGCTGGCATCAGCTTCAG 3928525 37 100.0 56 NNNNNNNNNN .......A...A.....................G... GTGGGCGGCACCGGGGGCGACGGCGGCAACGCAGGCACCGGCGCCGGCGACCCCGG 3928618 37 100.0 35 NNNNNNNNNN ...A................................. AGCGGCGGGGCCGGCGGTAGCGGCGGGGCCAACTT 3928690 37 100.0 26 NNNNNNNNNN ..................................... ACCGGCGGCAAAGGCGGCATGGGCGG 3928753 37 100.0 26 NNNNNNNNNN ..T..CT...GA......GC.......TGA....... AACGCCGGGGTCGGAGGAAAAGGCGG 3928816 37 100.0 40 NNNNNNNNNN ..C.AA.....A........G......G......... ACAGGCGGGCCCGGCGGCAGCGGCGGCGCGCAGCCCGGCC 3928893 37 100.0 1 NNNNNNNNNN G.C........AA......G.......TGA....... NNNNNNNNNN ========== ====== ====== ====== ========== ===================================== 21 37 45 CAACGGCGGCACCGGCGGCACCGGCGGCACCGGCGGC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: F [5,] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-12.40,-15.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [29-41] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [16.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [2617,772] Score: 0.18/0.18 # # Final direction: F [0.96,0.64 Confidence: LOW] >NC_021214 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1519929 30 100.0 41 AACTCAACGG .............................. TCAGTTCCCCTGCTTTCTGGATTGTTAAGCGAGGATCTTCC 1520000 30 100.0 36 AGGATCTTCC .............................. TCATACTCATCCCTCCCTCAAACCTTCAAATTGTCC 1520066 30 100.0 35 CAAATTGTCC .............................. CCTGACGGCAAAATCGTTTTCCGCACACGCATTGA 1520131 30 100.0 36 CACGCATTGA .............................. ATCTTTCTAATCTTATAGGTTAGAAACGGCTTCTAA 1520197 30 100.0 36 CGGCTTCTAA .............................. AGGACTTCTTGTTGTAGTTTGCGGAACATATCATAC 1520263 30 100.0 36 CATATCATAC .............................. GAATTGCTCTTGTACGAAAAGCTCGAATCCTTCGTC 1520329 30 100.0 36 ATCCTTCGTC .............................. TCAGAGGAGACTACGACCTTTTCGAATACGCCGACA 1520395 30 96.7 TACGCCGACA .........A.................... GCTCCTCCCT ========== ====== ====== ====== ========== ============================== 8 30 36 GTTTCAATACTTCCTTAGAGGTATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.40,-2.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: F [65.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [922,977] Score: 0/0.18 # # Final direction: R [1.05,4.5 Confidence: MEDIUM] >NC_021214 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1631808 30 100.0 36 CTCGGTTGGT .............................. ACAAGCGTTGTGCCATCACTACTTGTTCGAAGCCCA 1631874 30 100.0 35 TCGAAGCCCA .............................. AGACGTTCCTGTCGCTGGTAGTGTCGAATATTCGT 1631939 30 100.0 36 GAATATTCGT .............................. TTGTGTCTGAAGAATGAGCATCGAGTTCTACACGAT 1632005 30 100.0 TCTACACGAT .............................. CCGTTGAGTT ========== ====== ====== ====== ========== ============================== 4 30 35 GTTTCCATACCTCTAAGGAAGTATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-2.40,-5.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [82,647] Score: 0.18/0.18 # # Final direction: F [4.5,0.55 Confidence: HIGH] >NC_021214 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 1779957 30 96.7 37 TGTGGTCATG ....................G......... TTGTTTTTGGCATGCTGGCGCTGGCGCTGGCGGGCGC 1780024 30 96.7 37 TGGCGGGCGC ....................G......... CAAGCCGAATTGGAAATGGAACGATGAAACAGAAGCT 1780091 30 100.0 36 AACAGAAGCT .............................. GTTCTCTCAATGTCACGTCTCATCACCTCTTCTTCG 1780157 30 100.0 37 CTCTTCTTCG .............................. AGAAAGTAGTCGACAAGTTCGTTGATTGTCTCGTCGC 1780224 30 100.0 36 GTCTCGTCGC .............................. AGAGCTCTCCCGGGCCGTACCATCCAGGCCACCCCA 1780290 30 100.0 36 GGCCACCCCA .............................. TACAGAACATTGCACTGGAAGAGAAGAAGCAGGAGA 1780356 30 100.0 37 AAGCAGGAGA .............................. AGACATCTCGATCCTGATGAAGTAGGAGGGATACTTA 1780423 30 100.0 37 GGGATACTTA .............................. AAATCAGGATTGAACCTGACGTAGAAGCTTTGTACAA 1780490 30 100.0 37 CTTTGTACAA .............................. ACTTAAAGGAGGCAAAAAGACAGGAAAGAAGGGACGG 1780557 30 100.0 36 GAAGGGACGG .............................. AGGCAGATCTGAGGATCATTGCAGAGCGAGGAAACA 1780623 30 100.0 36 CGAGGAAACA .............................. AAGGAACTCAGGACGATTCTCTGGATCGGTCTCAAG 1780689 30 100.0 CGGTCTCAAG .............................. CCGTTGAGTT ========== ====== ====== ====== ========== ============================== 12 30 36 GTTTCCATACCTCTAAGGAATTATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.00,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: R [58.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [201,621] Score: 0.18/0.18 # # Final direction: F [4.87,0.45 Confidence: HIGH] >NC_021214 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 369173 30 100.0 37 AACTCAATGG .............................. AGACAATCGTGGATCAGGTCATCAATGCCCTGAATTA 369240 30 100.0 37 CCCTGAATTA .............................. ACTTGTGGAGATTGAGGAACATCTAGGAAAGAACATC 369307 30 100.0 36 AAAGAACATC .............................. AGCGATAACATTCAATCCTTCGACGAGGTACACCAA 369373 30 100.0 37 GGTACACCAA .............................. TAATCTTGTCTGTAGGATCCTCTGAAAACCCTCTCTG 369440 30 100.0 39 ACCCTCTCTG .............................. GTGGAAGAGTCCGCAGGAAAAGACAGCGCTGGGTAGGTA 369509 30 100.0 37 TGGGTAGGTA .............................. TAGGTGTCTGAAACCGAGTCAATCAGTGCATTGTCGA 369576 30 100.0 37 GCATTGTCGA .............................. CAGGAGAGCCATTTTCTGAGTATTTCGCAAGGAAGAT 369643 30 100.0 CAAGGAAGAT .............................. AGTGATCCTC ========== ====== ====== ====== ========== ============================== 8 30 37 GTTTCAATAATTCCTTAGAGGTATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: F [625,174] Score: 0.18/0.18 # # Final direction: R [0.45,4.87 Confidence: HIGH] >NT_187115 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 106351 29 100.0 32 NNNNNNNNNN GT..............A...........T TTTTCAGCCCTTGCCGACTGCGGAACGCCCCT 106412 29 100.0 32 NNNNNNNNNN ............................. GCGAAATAGTGGGGAAAAACCCCTGGTTAACC 106473 29 100.0 32 NNNNNNNNNN ..................A.......... ATATTGATACTGTTCTCAAGCGCCGTTTTAGC 106534 29 100.0 33 NNNNNNNNNN ............................. TGGTCATCAMCGKWRTCCTGGGGGCAAAGGCCG 106596 29 100.0 32 NNNNNNNNNN ............................. CGCACCAATAAATATGAACACCGTTTTATCCA 106657 29 100.0 32 NNNNNNNNNN ............................. AGGCAGTGCGGATCTTTTCCGCAAGCTGCTGG 106718 29 100.0 32 NNNNNNNNNN ............................. GTCCAGTGAAGGGGCGCTCAGGTGCAACCTCC 106779 29 100.0 32 NNNNNNNNNN ............................. AGTTCAACGCTAAGAATTGCCTCACGCTATCT 106840 29 100.0 32 NNNNNNNNNN ............................. CCGCCGGCTGAGGATGTCCGCTGGACACCCAG 106901 29 100.0 32 NNNNNNNNNN ............................. AACAGTTAATGCGGCCAGTTCTCCGCCTGAGT 106962 29 100.0 32 NNNNNNNNNN ............................. CATTGCGGGCAGTTGTCCAGATCATCTAATTT 107023 29 100.0 32 NNNNNNNNNN ............................. GCTCCCTCCCTGTTTAGTCGTAGCAACAATTC 107084 29 100.0 32 NNNNNNNNNN ............................. CTTACCACTTGTGTTAGCCCGGTAGTAATTCG 107145 29 100.0 34 NNNNNNNNNN ............................. CACSGCRGCSGGGTTGTWGTCGTAGKAWCAWMRC 107208 29 100.0 32 NNNNNNNNNN ............................. TGGTCATCATCGTTTCCTGGGGGCAAAGGCCG 107269 29 100.0 32 NNNNNNNNNN ............................. CGCACCAATAAATATGAACACCGTTTTATCCA 107330 29 100.0 32 NNNNNNNNNN ............................. GGCTTTTGGTCAATCCGCACAATCAAACATGG 107391 29 100.0 32 NNNNNNNNNN ............................. ACCGACATTACGGAAAAAATCAGAAAGGGGCT 107452 29 100.0 32 NNNNNNNNNN ............................. AGAACATGCTCCGCGAACCTCATCACGCACAC 107513 29 100.0 32 NNNNNNNNNN ............................. TGTCGGTATTCCCTCTTTCGTGGTCTCGCTGC 107574 29 100.0 32 NNNNNNNNNN ............................. TTTCTGTTATTAATTGCCATTGGCCACCACAC 107635 29 100.0 32 NNNNNNNNNN ............................. AAATTCGGTACTGGCAGTATTCCTCGCGAACG 107696 29 100.0 32 NNNNNNNNNN ............................. CTACGCGTGTTGAATTCGACGGCATACCAATG 107757 29 100.0 32 NNNNNNNNNN ............................. TGGTGGCGGCGCTGGCAATTCATGACCGGGGC 107818 29 100.0 32 NNNNNNNNNN ............................. ACCACCGGGCGTTAAAGCGCCGTCTGTCACGG 107879 29 100.0 32 NNNNNNNNNN ............................. TCGTGAAAGCCCTCGGAGGTAACTTCACCCGC 107940 29 100.0 32 NNNNNNNNNN ............................. TTTCATACGCCATATAAGAGGGGGCTATATGG 108001 29 100.0 32 NNNNNNNNNN ............................. CCATGAGCGGTCGCGGCGACCAGTATCTTAAA 108062 29 100.0 32 NNNNNNNNNN ............................. CGCAGCGAACTCCTGATAAACGGAATCATCCA 108123 29 100.0 32 NNNNNNNNNN ............................. CGCTGTCATGAGTTGCGACGCGGCGGAAAACA 108184 29 100.0 32 NNNNNNNNNN ............................. CAACATTTTTCCTCAAATTTGTCATTAACTCC 108245 29 100.0 32 NNNNNNNNNN ............................. GGTGATTTTGAAGCGGGTAGTTCGATGGTTGC 108306 29 100.0 32 NNNNNNNNNN ............................. CGTGTTGATACTGATGAGACGCCAATGGCCCA 108367 29 100.0 32 NNNNNNNNNN ............................. GCCCGGACCTTATTGCCGATTTCCGCGCCCTC 108428 29 100.0 32 NNNNNNNNNN ............................. GACTCCGATCTCTTTAGCTACGTTGTTGCCAC 108489 29 100.0 32 NNNNNNNNNN ............................. GTTCACGGCCAGTGACAAGGCTCCACGCCTAC 108550 29 100.0 32 NNNNNNNNNN ............................. AATGACGTGCTGACGTAGAGTGATCCGCCCTT 108611 29 100.0 32 NNNNNNNNNN ............................. AATATGAGGGTCTAGCAATGTCAGCTCTTTGG 108672 29 100.0 32 NNNNNNNNNN ............................. ATCGTCGTATGTTGTGGGTTTGAGGGCTGCGC 108733 29 100.0 32 NNNNNNNNNN ............................. AGGTTACAAAGTCGATCACCGAGAAATGCGGG 108794 29 100.0 32 NNNNNNNNNN ............................. TTACGACCGAACCACACCGATAAGAAAAACGA 108855 29 100.0 32 NNNNNNNNNN ............................. AACCCTGCCGCCACCAGCCCCAGCGGCGCTTC 108916 29 100.0 32 NNNNNNNNNN ............................. CAGAGGATAAAAAATGAAAAATTTTCGTACCG 108977 29 100.0 1 NNNNNNNNNN ............................. NNNNNNNNNN ========== ====== ====== ====== ========== ============================= 44 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [16,98] Score: 0.18/0.18 # # Final direction: R [0,2.1 Confidence: HIGH] >NT_187115 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================= ====== 125573 29 100.0 32 AGTCTGGAGA ............................. TCGGCCCGGAGGTTAATCCCCTCGCGTACCGG 125634 29 100.0 32 CGCGTACCGG ............................. CTCAGCGTGTTAACGGTGAAATTTGCCAGGCG 125695 29 100.0 32 TTGCCAGGCG ............................. CTCACCCAGGCGGTAACGCAATTTTTCACGCG 125756 29 100.0 32 TTTTCACGCG ............................. CAAAATTTTCGGCAGCGCATCACGCCAAGTAG 125817 29 100.0 32 CGCCAAGTAG ............................. GAATTGATTATTGCGCATAACCGGCTTTTTAC 125878 29 100.0 32 GGCTTTTTAC ............................. ATCCCAGCGGGCAATGTCCATGCGCACGCGGT 125939 29 100.0 33 CGCACGCGGT ............................. GCTGCGACGACCGCAGCCGGGTCAGTGTTAACC 126001 29 96.6 32 AGTGTTAACC .A........................... GCTCGGTGAAAACCAGTCGCCCCAGCGCGTCG 126062 29 100.0 32 CAGCGCGTCG ............................. GACGCGTTCCCAAGCCTCACGCAATTGAGCCT 126123 29 100.0 32 AATTGAGCCT ............................. TCATTGGGCGGACTCCTCAAAAAAAACCTCAC 126184 29 100.0 32 AAAACCTCAC ............................. ATTTCAACCTCAGCCTCAGCACTCGCGATCAC 126245 29 100.0 33 TCGCGATCAC ............................. GCTGGTGTTTGCGCGTGGGAACGTGGCTAAAGC 126307 29 100.0 32 TGGCTAAAGC ............................. GATCCCGCCAAACCCAGCCTGCTGGTTAAGAT 126368 29 100.0 32 TGGTTAAGAT ............................. CCGGCTTCATCCATGACCCTGAATTTCTCCGG 126429 29 100.0 32 ATTTCTCCGG ............................. TGTTGTGGTCATATCATGTACCGACATCGCGT 126490 29 100.0 32 GACATCGCGT ............................. TCATCTTCTAAGGCCATGTGTGTTCCTTTTTT 126551 29 100.0 32 TTCCTTTTTT ............................. TGTTGTGGTCATATCATGTACCGACATCGCGT 126612 29 100.0 32 GACATCGCGT ............................. TCATCTTCTAAGGCCATGTGTGTTCCTTTTTT 126673 29 100.0 32 TTCCTTTTTT ............................. CAGTAGTTATACGGTTTGAATGATGTTGTGGT 126734 29 100.0 32 ATGTTGTGGT ............................. ACCTCCGTCATTGCCGCCGCCTTTTATATAAT 126795 29 100.0 32 TTTATATAAT ............................. CTGATATTGAAATCCCGGAACTCAACATAACT 126856 29 100.0 32 CAACATAACT ............................. AACCAGTTGCCCGCTATCGTTGTTCCAGTTGC 126917 29 100.0 32 TTCCAGTTGC ............................. GCCAGCAGCACAGCCACAAGGAAGGATTTTTT 126978 29 100.0 32 AGGATTTTTT ............................. ATCGCGCTCGTAACGCAACGCCTGGAAAACGC 127039 29 100.0 32 TGGAAAACGC ............................. GCGCCGGCCTCCCACCCCGGAATAGCAGCCGC 127100 29 100.0 32 TAGCAGCCGC ............................. ATCGGCGCGCTGACGTAAGTCGTGGCCCCGGT 127161 29 100.0 32 TGGCCCCGGT ............................. TGTACCTGCAATATGGTAAATGATTATTTAAT 127222 29 100.0 32 ATTATTTAAT ............................. GAGGACCGGGACTGGACGATCAACGCCCTGAC 127283 29 100.0 32 ACGCCCTGAC ............................. CCAAAAGTCACCACGTATTATGTCGTCTCCTG 127344 29 100.0 32 TCGTCTCCTG ............................. ACGCCGGAACAACGAGCAGAGCATGACGCTGG 127405 29 100.0 32 ATGACGCTGG ............................. TCGTGCTCCTGTCGGGATACCTCATGGGCGCC 127466 29 100.0 32 CATGGGCGCC ............................. AGGTCGCGGACTGGCGAGGATACCGGGCGAAC 127527 29 100.0 32 CCGGGCGAAC ............................. TCATCACCTTATCGCCCCTTATCAGCTGGAGA 127588 29 100.0 CAGCTGGAGA ............................. ACTAAACGT ========== ====== ====== ====== ========== ============================= 34 29 32 CGGTTTATCCCCGCTGGCGCGGGGAACAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,5] Score: 0.37/0.37 # Reference repeat match suggestion: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 0.5/0.5 # Secondary Structural analysis suggestion: R [-12.50,-13.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [40.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA [160,298] Score: 0/0.18 # # Final direction: R [0,1.92 Confidence: HIGH] >NC_021214 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 409369 30 96.7 35 ACGAAAACTG ....................C......... TTTGGGAAGAGGAGGGAGAACATGAGGATAAGTGA 409434 30 100.0 37 GGATAAGTGA .............................. TAATCAAAATGTATCCAGACGGAACATCTAAAGAATT 409501 30 100.0 37 CTAAAGAATT .............................. TTCCAGTCCAACCGTCGACTGAGTGTGAATGACTCCC 409568 30 100.0 36 AATGACTCCC .............................. CACCCGTGATGTCTATCGTGTTGCCTGTCGTTACCG 409634 30 100.0 36 GTCGTTACCG .............................. GCGTTTCCACTCGTATCTATCGCTCTCACACGGAAG 409700 30 100.0 42 CACACGGAAG .............................. TTGTGCCTGTAAAGGGGACAGTAGATACTGAAAGTTTATATT 409772 30 100.0 35 AGTTTATATT .............................. CCGACAGCGAATCAGCGAATCCCCACGATGGTGCG 409837 30 100.0 39 CGATGGTGCG .............................. AGGTGCAATCGCAGGCATCTGGAAGCTCCAGAACAAAGG 409906 30 100.0 36 AGAACAAAGG .............................. CAGAGTAATGAGAGGAGTCATATTTGAAATCGATGA 409972 30 100.0 36 AAATCGATGA .............................. CCGGAAGTAGTAGGGTTCGTCGCCGGGCTCTGTGAT 410038 30 100.0 36 GCTCTGTGAT .............................. GTCTGAACTCTGCCTTGAACAATGCCTCCGAAGAAT 410104 30 100.0 36 TCCGAAGAAT .............................. CATTTGTAGCACTATCATAAGTCAGAGTTTTCCCCG 410170 30 100.0 36 GTTTTCCCCG .............................. AGGAAACGAATACGAAATCTGGATAAGAGAAGCAGA 410236 30 100.0 35 GAGAAGCAGA .............................. TATTGTGCTTTTGTTCAGAATGCTTTCGAGTCTGT 410301 30 100.0 38 TCGAGTCTGT .............................. TTTGAGCCTGATCGGGATAGCAGAGAACTTCACGTGCT 410369 30 100.0 36 TTCACGTGCT .............................. GTGTCCTTCAGTAGCAAATGGAGCTACAGGAAGAGC 410435 30 100.0 37 CAGGAAGAGC .............................. ACTTGAAAGTGCTTGAAAAAGTTGTGGAATAGCGCTA 410502 30 100.0 35 AATAGCGCTA .............................. TGCGAAGGATTGTGGTAGAGCATATGAAGTATATA 410567 30 100.0 37 GAAGTATATA .............................. ATCCATTCACAATCCCGACATTGTGAAGCCAACCACG 410634 30 100.0 36 GCCAACCACG .............................. AAGTACACATCAACCATTGTCCCTTCTGTTACCTGG 410700 30 100.0 35 TGTTACCTGG .............................. TCGATGCGATGGGGTGATAGGGTGCTTCGATGGAA 410765 30 100.0 37 TTCGATGGAA .............................. AAGGCAGATCTGAGGATCATTGCAGAGCGAGGAAACA 410832 30 100.0 37 CGAGGAAACA .............................. GAAGAAAGGAGGATGAGGAAGATGGGAAAAGAGAACC 410899 30 100.0 AAAGAGAACC .............................. CCGTTGAGTT ========== ====== ====== ====== ========== ============================== 24 30 36 GTTTCCATACCTCTAAGGAATTATTGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-1.00,-0.70] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [243,658] Score: 0.18/0.18 # # Final direction: F [4.87,0.59 Confidence: HIGH] >NC_021214 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 396571 30 100.0 36 AACTCAACGG .............................. GAAGGTTTGATGTAGAAGGTGGTGTGTACTGGAGAA 396637 30 100.0 35 TACTGGAGAA .............................. CCAGAGAAGGAGGAGTGTTTTGGGATTTTGCATGT 396702 30 100.0 37 TTTTGCATGT .............................. TGATCCAGACGGCATTCGTCCTGTACTGAGCTGGAAG 396769 30 100.0 37 GAGCTGGAAG .............................. TCAACCTCAAGCACCATTTGCCCGTAGCGCGTTGACA 396836 30 100.0 37 CGCGTTGACA .............................. ACTAGTATGAGCTACTACAATCCAACCACTGCACCTA 396903 30 96.7 39 ACTGCACCTA .........G.................... ACGTGAGCGCGTTTCTTTGCCATTTTCAGTATCGTATTT 396972 30 96.7 36 TATCGTATTT .........G.................... ACCTGTGCTAAATTCTCATCCCAGTATCGGATCTCG 397038 30 96.7 TCGGATCTCG .........G.................... TCTAAACCAG ========== ====== ====== ====== ========== ============================== 8 30 36 GTTTCAATAATTCCTTAGAGGTATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:66.67%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [628,180] Score: 0.18/0.18 # # Final direction: R [0.18,4.87 Confidence: HIGH] >NC_021214 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ============================== ====== 412 30 100.0 38 NNNNNNNNNN .............................. TCTGTGATCTGTTAACGGGGACATCCACACCCAAAATC 480 30 100.0 38 NNNNNNNNNN .............................. ACTGTCGGAGATGTTCTGCTGTGCATCGTCGAGAGTTT 548 30 100.0 37 NNNNNNNNNN .............................. ATATAAGCCTTTTCCAGTCTTCGGGGGACATTTCCCA 615 30 100.0 37 NNNNNNNNNN .............................. ATGCGAGCACTGTCCTCTCCAACATCCATATACACCG 682 30 100.0 37 NNNNNNNNNN .............................. CATACTCCAGCATCAAGCAACTTGCTGGCGAAATTTC 749 30 100.0 36 NNNNNNNNNN .............................. ATCCATATCAACGTTGCATATTCTCGTTGATAAAAA 815 30 100.0 37 NNNNNNNNNN .............................. GCGACAAGCCCACGTTCAGGCACGAGGTGTTCCCTGA 882 30 100.0 37 NNNNNNNNNN .............................. AAGTTTTACCTTTTCTCAGACAACTTCAACTGGAAAA 949 30 100.0 37 NNNNNNNNNN .............................. TCGATTATTTCTTTTACAAAGACATGCGATCATACAA 1016 30 100.0 35 NNNNNNNNNN .............................. TATACGTTGTAGAAATCGCAAAGGTGGTGATGTTA 1081 30 100.0 36 NNNNNNNNNN .............................. TCTCGAATCCGATATAATCATATTTCCTTATTATAT 1147 30 100.0 37 NNNNNNNNNN .............................. CCGCATCTCGTAGGTATTGCTTGCCTTCTGTTCCCTT 1214 30 100.0 35 NNNNNNNNNN .............................. TAAACTTGTAAATCCTTTTGAAGACTTAGAACAAC 1279 30 100.0 36 NNNNNNNNNN .............................. GAAACGCCCGCAAACGCTCATCACAAGCCCGTTTCC 1345 30 100.0 36 NNNNNNNNNN .............................. TTGAGTATAAAATCTTCTTCTGATAATGACAAAACA 1411 30 100.0 37 NNNNNNNNNN .............................. TGCTTCTATTACTCTTTGTAGCACGTTCGTGAACTCA 1478 30 100.0 36 NNNNNNNNNN .............................. TCGATAATCTCAGATGCCTCGCCTCAATTTCAATTG 1544 30 100.0 36 NNNNNNNNNN .............................. CTCCACAATGAAAAGAATAGATGGTAAGGTGTGCTT 1610 30 100.0 37 NNNNNNNNNN .............................. CTACTATCTTCTATATATATATTTTTGTTTTTGTTTT 1677 30 100.0 38 NNNNNNNNNN .............................. CTATTTCCCTCTGCCGTCTCTTCGAAATGATCACCTCT 1745 30 100.0 38 NNNNNNNNNN .............................. TGTGAAGGCGTATGAGGTGGAGGATATTCCTGCAATTG 1813 30 100.0 37 NNNNNNNNNN .........A.................... TTTTTCCAGCATCTTCTTCACGAAGTACGTCTTCATC 1880 30 100.0 36 NNNNNNNNNN .........A.................... GCGATGTTGCGAGAACGATGAAAGATTTGTATGAAC 1946 30 100.0 37 NNNNNNNNNN .........A.................... TTGTCGAACTCTTTGGTACTTCCATCCGGATACATCT 2013 30 100.0 37 NNNNNNNNNN .........A.................... GAGTAGTACAGAGGAGAGAGATGCAGATATCCACGAC 2080 30 100.0 35 NNNNNNNNNN .........A.................... CTCGATCGCTTGTGGTATCTCTGTCTGTGCGAGCT 2145 30 100.0 39 NNNNNNNNNN .........A.................... TTGTGATGATGTCGCCAAGCTTTAGGGGGACATCTGTTT 2214 30 100.0 36 NNNNNNNNNN .........A.................... CTGATCTAGCCGTCCGGCCAGTCACAGGTTGAGATA 2280 30 100.0 37 NNNNNNNNNN .........A.................... ATGTATTGCAAGGAAAAGCAAAAATAAGATTCGACAG 2347 30 100.0 37 NNNNNNNNNN .........A.................... TCGAACTCGAAGAGGCCTATGCACCTGTCCAGCCTAT 2414 30 100.0 36 NNNNNNNNNN .........A.................... ATCCTCCTTACTTTGGCCGACACCGTTCGTCCGTTT 2480 30 100.0 36 NNNNNNNNNN .........A.................... CTTCAAGCCATACTAATATTGCGTATTCTCTTCTCA 2546 30 100.0 37 NNNNNNNNNN .........A.................... AAAAGCCTACGAAGGGCTTCGAGTACCACCAGCTTTT 2613 30 100.0 37 NNNNNNNNNN .........A.................... GGGCTGAAAAATTTCCCATTTCGTTTTATCACCTCCT 2680 30 100.0 37 NNNNNNNNNN .........A.................... CAAGGGGAGGATGATACTGAATGGATAGGGGAACTCA 2747 30 100.0 36 NNNNNNNNNN .........G.................... ACCATTCATCCATTACAACCTCTTTGCCTCTAATTT 2813 30 100.0 36 NNNNNNNNNN .........G.................... TGATGTCTTCCCATTGTTTCGTGTTGTCAAACACCT 2879 30 100.0 37 NNNNNNNNNN .............................. TAAAGCATACGCTCCAAAACGTGAACAAATTCTCTCA 2946 30 100.0 35 NNNNNNNNNN .........A.................... AGTTGGACGACGATCTTGTATTCATAAATGTTGTT 3011 30 100.0 35 NNNNNNNNNN .............................. TAAGACATTCTTTCGCTAAGAAAATCTAATAGTTT 3076 30 100.0 1 NNNNNNNNNN ...................T...C.A...A NNNNNNNNNN ========== ====== ====== ====== ========== ============================== 41 30 36 GTTTCAATACTTCCTTAGAGGTATGGAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.33%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-5.40,-2.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [413,51] Score: 0.18/0.18 # # Final direction: R [0.96,4.5 Confidence: MEDIUM] >NS_000191 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ================================ ====== 331298 32 100.0 33 NNNNNNNNNN ................................ TCCGTTACTGCGTAATAGCGTATATCAGCACCC 331363 32 100.0 33 NNNNNNNNNN ................................ TGGATACCGCCACCACCGCCGCCACCTCCGCCG 331428 32 100.0 34 NNNNNNNNNN ................................ CCACAACACACGAAGTTATTGACAACAATATGTA 331494 32 100.0 34 NNNNNNNNNN ................................ TGCGGAGTTAATTCCATAGTACCTAAAGCAGTAT 331560 32 100.0 34 NNNNNNNNNN ................................ CCATTCGCGCCCCACAAAAAACTAGCTTTGCTAG 331626 32 100.0 33 NNNNNNNNNN ................................ TCTAAACCATTGTAATGATATATATCCATTTCT 331691 32 100.0 33 NNNNNNNNNN ................................ TTCCACGCGTAACTATTTACAGCGATAAACAAA 331756 32 100.0 34 NNNNNNNNNN ................................ TGCGAGTAAATGGGACAAAAAAGAAAGCCCTAAA 331822 32 100.0 35 NNNNNNNNNN ................................ TAAAAATGGAAAAGATTTGCTGTGTTATGAAAAAG 331889 32 100.0 34 NNNNNNNNNN ................................ CGATAACAGCCCAGAAAAATCAGGACTGGTAAAA 331955 32 100.0 35 NNNNNNNNNN ................................ CCAACTACTTATATTCCTCCACTGTGTTCCTGAAA 332022 32 100.0 34 NNNNNNNNNN ................................ CCTCTAATTCCAACTGACATTCGTATGCATTTCC 332088 32 100.0 32 NNNNNNNNNN ................................ TGGTATAAGATATTTTTTTTTCTGACCTTCAA 332152 32 100.0 33 NNNNNNNNNN ................................ TGTTTGCTGATTTATCTAAATCGTGGCGAGTAG 332217 32 100.0 33 NNNNNNNNNN ................................ CTAATGCGAGGTAAGGATTTAAGCCTGCTTCTT 332282 32 100.0 35 NNNNNNNNNN ................................ TCTATATATCTGCCACCTGCACGAGCCGCTCTCTC 332349 32 100.0 33 NNNNNNNNNN ................................ AAAAGTGATTGTTTGTTTGCCTGCTATCACTTC 332414 32 100.0 35 NNNNNNNNNN ................................ CTCAATACGTCCTCAAGCAGGTTCCTCTCTCCCGA 332481 32 100.0 32 NNNNNNNNNN ................................ TGTGCTTAAGTTTTGTATTACCATATATTCTG 332545 32 100.0 35 NNNNNNNNNN ................................ TGCTGTCATCCACCGCAAAAAGGTTGCACAGTGCG 332612 32 100.0 33 NNNNNNNNNN ................................ CTTGCAAGTGCAGCATTTTGCTCCTCAAGCTCT 332677 32 100.0 34 NNNNNNNNNN ................................ CTGCAAAGCTGTAAATACTGAAGCAAAATGGGCA 332743 32 100.0 35 NNNNNNNNNN ................................ TACAGCCGTGCTTCCAGTGCCAGTACCAACAACAA 332810 32 100.0 33 NNNNNNNNNN ................................ TACCACCAACACATATTAGCACCGCTAGTATAA 332875 32 100.0 34 NNNNNNNNNN ................................ GCTGCACCACATCCGTTATAATCGTAAATTGTTG 332941 32 100.0 32 NNNNNNNNNN ................................ CCGCCCGCCAGTAAACTTACGGTACAATGCCA 333005 32 100.0 33 NNNNNNNNNN ................................ AGAACAGCCAGCAGAGAGATGTAGAGACTATGC 333070 32 100.0 33 NNNNNNNNNN ................................ TTGTACGTATGTTGCCTAAAAGGGTGTGAAGCG 333135 32 100.0 33 NNNNNNNNNN ................................ TAATCCAAATGGTGATAACGGTGGCGATAATAA 333200 32 100.0 33 NNNNNNNNNN ................................ TGGCGATACCAGCGGCAATAAGTACTCTGCGAA 333265 32 100.0 34 NNNNNNNNNN ................................ TTGAATTTTAATTGTTTCAGGAGGTGCTAACTCT 333331 32 100.0 33 NNNNNNNNNN ................................ CTTCTAAACCTGTAACAAATTCTAACGCCTCAT 333396 32 100.0 33 NNNNNNNNNN ................................ TTGCATTCTGCTCGCTGCAAATTCATAGGCTGG 333461 32 100.0 34 NNNNNNNNNN ................................ ATAATTGTGCTTATCATTTTATTCCCCTTTAGAA 333527 32 100.0 34 NNNNNNNNNN ................................ GTCAAAAACCAGATTATTTAATATGCTTGAGTTT 333593 32 100.0 34 NNNNNNNNNN ................................ CTTAAATTTCGCATACGATAAATCATTATCAATC 333659 32 100.0 34 NNNNNNNNNN ................................ TGTGGCTGACCAAGAGCGGATAGCGAAAGCTCAA 333725 32 100.0 35 NNNNNNNNNN ................................ GCTTCCAAAACTGCTAAATCTTTTTTCATTCGGCA 333792 32 100.0 33 NNNNNNNNNN ................................ TGCAGGGGAGTATCCTGTTGAGGAAACGCTGGT 333857 32 100.0 35 NNNNNNNNNN ................................ TCGCAGAAAATCTTGCTCAAATCTAATACGGTATG 333924 32 100.0 33 NNNNNNNNNN ................................ CTGCCAGTCCGCACATTGCACGTTAATTATACT 333989 32 100.0 33 NNNNNNNNNN ................................ TTGTTTTGCTTGAAATCTAGCCAAAATGCCTGA 334054 32 100.0 33 NNNNNNNNNN ................................ CAAATCCGCGCCAGTTGGCGCATAAGATTTTTT 334119 32 100.0 35 NNNNNNNNNN ................................ CCGCAGAACAAAAAGAACTTGACGCAGAAATTGAC 334186 32 100.0 34 NNNNNNNNNN ................................ CAGCGTGGACGCAAGTGCTATAGACGGTAGTTCA 334252 32 100.0 33 NNNNNNNNNN ................................ TAAATAGGTTATACTGGTATCTATTTTTTTTAG 334317 32 100.0 34 NNNNNNNNNN ................................ CACTCTTGGCAAAATTTGTTTTCCTTGAGAAATA 334383 32 100.0 34 NNNNNNNNNN ................................ TTTACATCTAACCAGCTGGCTTATTATGACATAC 334449 32 100.0 34 NNNNNNNNNN ................................ TTGAGAGAGAAGTCCATTTTTGTATATATCCTTT 334515 32 100.0 34 NNNNNNNNNN ................................ TTGTTCTCCTTCGGGCGGTTCTGGCGCTGCGTAA 334581 32 100.0 33 NNNNNNNNNN ................................ ATCCTCGCGGGCATAGCTCTCGCAGGTGATTTC 334646 32 100.0 33 NNNNNNNNNN ................................ TTCTCTTGAAGCCCCATACTGCCACGCTGGCAG 334711 32 100.0 34 NNNNNNNNNN ................................ CAAACTGGCAATCGCCAGAAACTTTTCTGCAATT 334777 32 100.0 34 NNNNNNNNNN ................................ TTTACGGCGTTGCTCTGTTATCCCAAACATATCC 334843 32 100.0 34 NNNNNNNNNN ................................ ATTCACAGCTGTGTAATTACCATAATATAGCCTG 334909 32 100.0 34 NNNNNNNNNN ................................ AGCCCCTCTGGGCTGTTATAGTGTTCGGCAACCG 334975 32 100.0 33 NNNNNNNNNN ................................ AAGTATTTATCACTACAATCATATTTTTATTAA 335040 32 100.0 33 NNNNNNNNNN ................................ CCACAAATCTTGATATGGAGTTTTCAGCAACCA 335105 32 100.0 34 NNNNNNNNNN ................................ TTAGAACTCCCCGTTTTAACTTCGCCCCCATCTA 335171 32 100.0 35 NNNNNNNNNN ................................ CGCCAGTTCTGGTGTCCACTCATCGTGCTGGTCTG 335238 32 100.0 32 NNNNNNNNNN ................................ TCGCTATTAAACGCTTGTTGTGGCAGAGTATG 335302 32 100.0 33 NNNNNNNNNN ................................ CAGCAACATTAAGTGTTCCGCCACTGCTTCCTC 335367 32 100.0 34 NNNNNNNNNN ................................ AAGGGCTTGACATATTTACAAATATATATTATAA 335433 32 100.0 34 NNNNNNNNNN ................................ CGCCCTGAATATCCCGTGCTGGCTTTTAGGTGAT 335499 32 100.0 34 NNNNNNNNNN ................................ ATATCGCCTTCGTTATAGGTGCTATCAACATCCC 335565 32 100.0 34 NNNNNNNNNN ................................ TGTACACCAGCGAGCTTAATGACAGCAATGAACG 335631 32 100.0 35 NNNNNNNNNN ................................ AGGGTATGAATGCTTACGGAAGCTTATCTGCTGCG 335698 32 100.0 35 NNNNNNNNNN ................................ CGTACTCTCTAACTCATTGGCTTCCATCATTTATA 335765 32 100.0 35 NNNNNNNNNN ................................ CATTTCTGCCGCTTCACTTCTGCCCTTTACAGGCA 335832 32 100.0 35 NNNNNNNNNN ................................ TTTTTAGTGTAATACTTGCCTCAAGCTCAATAAAA 335899 32 100.0 33 NNNNNNNNNN ................................ AGCTCTAAATATCCCGTGCTGGCTTTTAGGTGA 335964 32 100.0 33 NNNNNNNNNN ................................ AAGAGATATTAGATATATTAAATCTGCCTCATA 336029 32 100.0 35 NNNNNNNNNN ................................ TATAGAAGGTTTAATGTGTACGCTTGAAATGTTTG 336096 32 100.0 34 NNNNNNNNNN ................................ GTAGAAAAAATCGTTTGAGCAGAATTACCAGCAA 336162 32 100.0 34 NNNNNNNNNN ................................ GTCAACAGCAAATAAGTTGCACAATGCGTATTTT 336228 32 100.0 33 NNNNNNNNNN ................................ CATATATCCTCTCTGTGCCGATTGGCACTTTAT 336293 32 100.0 34 NNNNNNNNNN ................................ TTGCAGACCTTGTTTCAGCTGCGGGCGGTGATGA 336359 32 100.0 35 NNNNNNNNNN ................................ CTAAAAACGGCAACATCCTGCTCCATTTCGTTCCT 336426 32 100.0 34 NNNNNNNNNN ................................ ATTTATTTTCAGGTGCTTGTGCCTCTGGAACCTT 336492 32 100.0 35 NNNNNNNNNN ................................ TAGTGTCCCGCTCTGGAGTATAACCTTGATTACCG 336559 32 100.0 35 NNNNNNNNNN ................................ ACCTCATCAAAACTAATCCAAAAAACAAAGGGACG 336626 32 100.0 34 NNNNNNNNNN ................................ CAGTTTGGGGTAAGAGGCGTGCTGATTAAAACAC 336692 32 100.0 35 NNNNNNNNNN ................................ TACAGGGTTCATTTTAATCTTTTTCATTCCTGAAG 336759 32 100.0 34 NNNNNNNNNN ................................ TTGTCTGCGTTGCTGATATAATCTCTCTGCTTCA 336825 32 100.0 34 NNNNNNNNNN ................................ CTCTTAACCGTTACATTTATATCAATGACACTTA 336891 32 100.0 35 NNNNNNNNNN ................................ CCAAAATCTGCTTTCCAGCATAGCCTCTATATAAG 336958 32 100.0 34 NNNNNNNNNN ................................ TAAATTTGAGGAGCAGTGGCGGAGAAAAGCCAGA 337024 32 100.0 34 NNNNNNNNNN ................................ TGCATATCGGCTTTATTTTGGTTATCTTTATTCG 337090 32 100.0 33 NNNNNNNNNN ................................ CCGCCCACTACGGCTGGAAGCTTGTCTATTTCA 337155 32 100.0 35 NNNNNNNNNN ................................ GCAAAAGAAGGAGTAAATGATATAGTCTGTTTTCC 337222 32 100.0 33 NNNNNNNNNN ................................ AAGTTCAAGCTCTAGCAGTTCCAGTAGCAGTAG 337287 32 100.0 33 NNNNNNNNNN ................................ AGTTCCGACAGGAGAAAAGAGTTCAACATTGTA 337352 32 100.0 35 NNNNNNNNNN ................................ CACTCTCCCGCTGCACCTCCTGTGTTGTACATCCT 337419 32 100.0 33 NNNNNNNNNN ................................ TAAAGGCGGATTTAGAGCAGGATTGCGATTGAA 337484 32 100.0 34 NNNNNNNNNN ................................ TTTATCCTCAAAATATATACGTCCGCCTTGTCCG 337550 32 100.0 35 NNNNNNNNNN ................................ GGCGGACTGGACGCGAAACAAAAAGCGGCGTTGGT 337617 32 100.0 34 NNNNNNNNNN ................................ TCTTGCAAGCGTGTTGGCTGGCGCCGTGACATCA 337683 32 100.0 34 NNNNNNNNNN ................................ TGCTTTCGCGGAACACAATTGCGTGAGATATACT 337749 32 100.0 33 NNNNNNNNNN ................................ TGAGGCTAATGACAGTACAGGTACAAATCCTAT 337814 32 100.0 33 NNNNNNNNNN ................................ CCATATTTTCAGCTTTTGTTTGCTCCGCCTGTG 337879 32 100.0 35 NNNNNNNNNN ................................ ATTGCAATCTCGTAATCTAACCTCATTTTTTCAGC 337946 32 100.0 34 NNNNNNNNNN ................................ TGCTTTCGCGGAACACAATTGCGTGAGATATACT 338012 32 100.0 34 NNNNNNNNNN ................................ TTCGCAGAAACGTTCAGTATCAGCGAAATTATCC 338078 32 100.0 35 NNNNNNNNNN ................................ GCAAAAGAAGGAGTAAATGATATAGTCTGTTTTCC 338145 32 100.0 34 NNNNNNNNNN ................................ AGTCCATCCAATTTCGTTTGATGGCAGTGGTTTA 338211 32 100.0 34 NNNNNNNNNN ................................ TGTGCTAAAAGGTGTTAAGACTGCAGCTGGCGGT 338277 32 100.0 34 NNNNNNNNNN ................................ TTGCAGACCTTGTTTCAGCTGCGGGCGGTGATGA 338343 32 100.0 33 NNNNNNNNNN ................................ CGAAGGATGTTCCCAATGAGTAAAGATAATAAA 338408 32 100.0 34 NNNNNNNNNN ................................ AGGGAATAATGTCTCAACTTGCTTCAGGATTAGG 338474 32 100.0 33 NNNNNNNNNN ................................ TGTGGCATAGATACTATCAAGAGCTGTAATTAA 338539 32 100.0 33 NNNNNNNNNN ................................ GCCGCCTAAAGAAAGAGCCATACAATTAGCTTT 338604 32 100.0 33 NNNNNNNNNN ................................ TAGTTAATGTAGCTACGTTATTAGCCATTGTAA 338669 32 100.0 1 NNNNNNNNNN ................................ NNNNNNNNNN ========== ====== ====== ====== ========== ================================ 113 32 33 GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: R [5,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-6.50,-6.20] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: R [177,429] Score: 0.18/0.18 # # Final direction: F [4.87,0.55 Confidence: HIGH] >NS_000191 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ==================================== ====== 343494 36 97.2 30 TCAAAGGTGT -................................... TTTGGTTTGTTGTTATTGACATCTTGTTCT 343560 36 100.0 30 ATCTTGTTCT .................................... ATAATAGCGATAGCAGTGATATTCTTGATG 343626 36 100.0 33 ATTCTTGATG .................................... CAATATTTTCAAGCCCAGTGCTGTCTCCAAGTT 343695 36 88.9 30 TCTCCAAGTT ----................................ ATTACCATTAGCATCTAATCCAAATGATTT 343761 36 100.0 30 CAAATGATTT .................................... ACCGTATGCTTCTATAGTGTTTAATCTACA 343827 36 100.0 31 TTAATCTACA .................................... TGTATTCAGCTTCAATGGCGATTTTTGGTTC 343894 36 100.0 30 TTTTTGGTTC .................................... TTACGAACCGATTAAACAAACATGGGACGC 343960 36 100.0 30 CATGGGACGC .................................... CCAGAGATACGACGAACGTCACGGATTGAA 344026 36 100.0 30 ACGGATTGAA .................................... CATTATATCAGCGATTGAGAGCATAAAACC 344092 36 100.0 30 GCATAAAACC .................................... TTGATTCGCTGAGAGCCTTTACGGCCTGTG 344158 36 100.0 30 ACGGCCTGTG .................................... CAAAGTAAATACCATACGGGAACCACGTAG 344224 36 100.0 30 AACCACGTAG .................................... GTACTAAAGGGTGCTACTACAGTAAAGCCC 344290 36 100.0 30 AGTAAAGCCC .................................... CAATTGTACGGAATATATTAACTTTCTTAC 344356 36 100.0 30 ACTTTCTTAC .................................... GTAAGGTGCATAGCGTACTCCGGTAGCTGG 344422 36 100.0 30 CGGTAGCTGG .................................... TGGATATCATATTACCTGCATACGCTGATA 344488 36 100.0 30 TACGCTGATA .................................... TAACCAAAGCAGGCATATCGTATACATTGG 344554 36 100.0 30 TATACATTGG .................................... ACATTGTTAAAAAATATAGAGAGAATTACG 344620 36 100.0 30 GAGAATTACG .................................... CAGGGATTATTACGTCCTCGCCTGCTTTTA 344686 36 100.0 30 CCTGCTTTTA .................................... GCAAAGTAACTTAATCTAAACATTTTTACA 344752 36 100.0 30 CATTTTTACA .................................... ATGACGAATATAAAACTATGGCTGATATAG 344818 36 100.0 30 GCTGATATAG .................................... GAATTCAAGTACGACGATATCAGAGATGGT 344884 36 100.0 30 CAGAGATGGT .................................... CATGCAAAGCACTTTTATCACACTTACGTA 344950 36 100.0 CACTTACGTA .................................... AGACAAACGC ========== ====== ====== ====== ========== ==================================== 23 36 30 GTTATAGTTTCCTTCCTCTCTCAGATGTGCTATAAT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:63.89%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [50,64] Score: 0/0.18 # # Final direction: R [0,0.41 Confidence: MEDIUM] >NS_000195 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================================== ====== 1486615 38 100.0 36 CCTAAATCTT ...................................... CTCTCGCTTAACCAAGTTGCCCAGCCAGTAATCATC 1486689 38 100.0 35 AGTAATCATC ...................................... TGCTGAGAGCAGATACCTCTTCGTATTTGCTCTTG 1486762 38 100.0 37 TTTGCTCTTG ...................................... GTTGTGGTGTAATAAGTCGTTATTTATTGATGTATAG 1486837 38 100.0 36 TGATGTATAG ...................................... CCCGCATTTATCATTTTAGTAAGAATGAATTGCAAA 1486911 38 100.0 35 GAATTGCAAA ...................................... CCTTATTTCCCGATTTCGCAAACCGAGAATAAGGA 1486984 38 100.0 36 AGAATAAGGA ...................................... TGAAGGGCGTCAAAGCTGCTATATCTTTGAATTTAT 1487058 38 100.0 36 TTGAATTTAT ...................................... AGAACAAAGATACAGGTCTTTATGCACGCATAACAG 1487132 38 100.0 36 CGCATAACAG ...................................... AGGAATTTTAAGTTGTGTAAAAATTAAAGTCTTTTA 1487206 38 100.0 35 AAGTCTTTTA ...................................... AATAGGAGAAATGTTCACTCCTGCTCTAGAGAGCG 1487279 38 100.0 37 CTAGAGAGCG ...................................... CTTGCCCCTGCTACTTGATAGCGTATTCCAATATCGC 1487354 38 100.0 36 CCAATATCGC ...................................... CCAAATCCGGTATCACATTTGCGGCAATAAATTTTT 1487428 38 100.0 37 ATAAATTTTT ...................................... TATATAATTCAGGTTGTAGACCCGCACGATAGCAGAC 1487503 38 100.0 36 GATAGCAGAC ...................................... GCAGACAAAAAATCGGATAATGAATATGAATAGAAG 1487577 38 100.0 36 TGAATAGAAG ...................................... ACAATAGAATTGGAGGATAAATGAGAAGGTTAATAA 1487651 38 100.0 36 AGGTTAATAA ...................................... TTAAACTCTCAATTAGGGAATCATAATTATTAGAAG 1487725 38 100.0 37 TTATTAGAAG ...................................... GGAAGAGAAAAATAGATATAAGCAAATCAGAGGATAA 1487800 38 100.0 37 CAGAGGATAA ...................................... ACATAGGCAGCAGGGGTAAAGACAGTAGTATCATGAT 1487875 38 100.0 36 GTATCATGAT ...................................... GCAATTCACCACGGAACACAGCAGTTGCCTTGGCAT 1487949 38 100.0 37 GCCTTGGCAT ...................................... AAAAAGGTCTTTCTCGCATCCCTTAATTCTGATGGTA 1488024 38 100.0 36 TCTGATGGTA ...................................... CACTTCTTATGGCTATCCCATCAGCTTCTTCCGTGG 1488098 38 100.0 37 TCTTCCGTGG ...................................... ATGGAAGGTCGAGTATCCATTTTTCAATTGCTTTAGA 1488173 38 100.0 36 TTGCTTTAGA ...................................... CCTCATTATCCCTCACCTCCCATCCGATGCAATTCT 1488247 38 100.0 37 ATGCAATTCT ...................................... TATTCACAATGAACTTTCACCCTACTTATTTGCCCGG 1488322 38 100.0 35 ATTTGCCCGG ...................................... TATTTGTGGTCATTGGTTAAAAGAGCCGGCTGGGA 1488395 38 100.0 34 CCGGCTGGGA ...................................... CGGTTCTTCCTTCACTATGATGTAGTCAACCATT 1488467 38 100.0 36 GTCAACCATT ...................................... AAAGACCGCTGGGTTTCCCAGCGGTCTGTAGATTCA 1488541 38 100.0 36 TGTAGATTCA ...................................... GCTGACTTTCGTTCTCGCGTTTTCGCGAGAGAGGAC 1488615 38 100.0 35 GAGAGAGGAC ...................................... CCCAATCGCCTTGCAAATCCTTCACATTGGGCTCA 1488688 38 100.0 35 ATTGGGCTCA ...................................... CCGCCTCTCCCACCGGAAATACCCGTCCATTCATA 1488761 38 100.0 36 TCCATTCATA ...................................... ACTGAAACTTTTTGCAAGAATTTTTGCTGTAAGTTG 1488835 38 100.0 36 CTGTAAGTTG ...................................... ACTGAAACTTTTTGCAAGAATTTTTGCTGTAAGTTG 1488909 38 94.7 37 CTGTAAGTTG ....................................CT ATTGTAAGTTCATATTTATAGTCTTCGCTAACATTGT 1488984 38 100.0 36 CTAACATTGT ...................................... ACCGAGTAAGAGTGATATTCGGGTCAGCTCAAGATT 1489058 38 100.0 36 GCTCAAGATT ...................................... TTGATTTGTGTTATCCACAATTTCCAAAATTTCCTC 1489132 38 100.0 36 AAATTTCCTC ...................................... CATAGTGTTGTGTAATATGATTCCAGGTTACATTAT 1489206 38 100.0 36 GTTACATTAT ...................................... ACCATATATACGCCTTCGCACAGTTTACCACTAATG 1489280 38 100.0 37 ACCACTAATG ...................................... ATCTTCCCAGCGATCGTTGCTGGGGAGGGAAAAGTTA 1489355 38 100.0 36 GGAAAAGTTA ...................................... AATGTTATTTTTTCCACACTCCCTTTTTCTGTCAAG 1489429 38 100.0 36 TTCTGTCAAG ...................................... TTTTACGTGCATTATTATTGATGACTTGTGGGTTGT 1489503 38 100.0 35 TGTGGGTTGT ...................................... GGATTTTCCCAGCGGTCTCAATGAGATGTGAAGGT 1489576 38 100.0 35 ATGTGAAGGT ...................................... TAACTACTGGTAATTACTGTACAATAGATTATCGT 1489649 38 100.0 37 AGATTATCGT ...................................... CAAGTCCACAAATGGATAGTTTGGGTGTCTTACTTAC 1489724 38 100.0 37 TCTTACTTAC ...................................... AGAGTTGTCTCTTGTTCACCTCGTCATTGGAAGAATA 1489799 38 100.0 39 TGGAAGAATA ...................................... AATCTCATTCAGAGGTTGACTCGTTAATTTTTTGTGGGG 1489876 38 100.0 35 TTTTGTGGGG ...................................... GTCTGGAAGGCACCGCAAGGTGGGGGGGGTGTCTC 1489949 38 100.0 36 GGGGTGTCTC ...................................... ACCGTCTGATCCTTATGAATCAGCAATGGTTAGGTA 1490023 38 100.0 36 TGGTTAGGTA ...................................... TCTGCTACCGAAAAAGCGCAGAATTGGAAGGTGTAT 1490097 38 100.0 36 GAAGGTGTAT ...................................... CTCTGGAAGGCACCGCAATGCGGGGGGGGATGTCTC 1490171 38 100.0 35 GGGATGTCTC ...................................... TCATTCTTACTAAAATGATAAATGCGGGGATAAAT 1490244 38 100.0 37 GGGGATAAAT ...................................... TTTTTATTGTGTTATTTTTGCACACCCTGTTTTCCGT 1490319 38 100.0 37 TGTTTTCCGT ...................................... AATGAAATTGATGAGAGTTTGCTTCCAGAGATAACAA 1490394 38 100.0 36 GAGATAACAA ...................................... GGAATAAATTTTTTACTTCTTCTGACCCATCGTGAA 1490468 38 100.0 37 CCATCGTGAA ...................................... ATTTGGTAATGAAGGCAATGGATATACTGGAGGACGG 1490543 38 100.0 37 TGGAGGACGG ...................................... AAGACGCAGGAGATTCAGGAAATCATTCGCGAAAGGC 1490618 38 100.0 37 CGCGAAAGGC ...................................... AGTATTAGTAATCAGTTATGGCGGTAAAGAAATACTA 1490693 38 100.0 35 AGAAATACTA ...................................... GTTTCCTATTTTCCTTGGAATCCGATGCGCTGTGA 1490766 38 100.0 36 TGCGCTGTGA ...................................... ACGAAGGCCGGGAATGCCCAGCCATCACGTGCCCAG 1490840 38 100.0 37 ACGTGCCCAG ...................................... TTTTTCCCGTTGCAATGATTGTCTTAAGCGTTTTCCA 1490915 38 100.0 35 GCGTTTTCCA ...................................... GAACAGTGAAAAAAGAATGGTTACCACGGAAGAAG 1490988 38 100.0 37 ACGGAAGAAG ...................................... TCAAAAACAGCCGCGCGGAAAGCGAGGCAAAAGGAGA 1491063 38 100.0 37 CAAAAGGAGA ...................................... ATGAATGACCACTCAACGGTAAAACCATTATCCTTGA 1491138 38 100.0 36 TTATCCTTGA ...................................... TTTATGATTCTATTTTCACGGACCCCCTTTTTCCGT 1491212 38 100.0 36 CTTTTTCCGT ...................................... ATATACAAACCTATGCATTCACTAATTTATTTATGA 1491286 38 100.0 36 TTATTTATGA ...................................... TTAAGGAACTGGATGAGGATACGGAATTATGGCTCG 1491360 38 100.0 36 TTATGGCTCG ...................................... GTAATTGTTTGGAATTTTTTATTGCGAGTAGATTAT 1491434 38 100.0 38 AGTAGATTAT ...................................... GAAAACAAAACAATTTCTGATTCCGGAAAACTTTTCAA 1491510 38 100.0 36 AACTTTTCAA ...................................... AAGAAGCACAGCTTATTTATGAATGGACTGGAAAAT 1491584 38 100.0 37 ACTGGAAAAT ...................................... ATAAATATAAAGAAGGAATACCAGGGGATGATATACC 1491659 38 100.0 36 ATGATATACC ...................................... TAAAAATAGATGACTTTGCCATTACATCTTTATTGT 1491733 38 100.0 37 TCTTTATTGT ...................................... TTTTTTTTGCCTTATATATTATAGGAATGGAAAAAAA 1491808 38 100.0 35 TGGAAAAAAA ...................................... AAGCTGAACCGAGTAAGAGTAATATTTGGCTCTGC 1491881 38 100.0 36 TTGGCTCTGC ...................................... TTTATGATGCCATTCTCCCACACCCCTTTTTTTCGT 1491955 38 100.0 36 TTTTTTTCGT ...................................... CGTTGGATGCCCTTGTAGATTTTGTTTCAGGAAATC 1492029 38 100.0 35 TCAGGAAATC ...................................... TGCAATCTATAAAATTCATATACCAGTTATCTCTT 1492102 38 100.0 36 GTTATCTCTT ...................................... ACAGTCCCTGGGAATTAGAAAAGGAGCAGATTACTA 1492176 38 100.0 35 CAGATTACTA ...................................... ATTGCATTTTTGTTCGTCTATATAAGCATTTCCAT 1492249 38 100.0 35 GCATTTCCAT ...................................... ATACCCGTCCAGGAGGGACCAATTAACGGGAGAGG 1492322 38 100.0 36 ACGGGAGAGG ...................................... ATTCTTTCGATATAGCCAAAGCAACTTCATTCTTGG 1492396 38 100.0 36 TCATTCTTGG ...................................... CATTTTTTAACTGCCATTTCTTTTTTCTCCTTTTTT 1492470 38 100.0 36 CTCCTTTTTT ...................................... ATTCATTGATATTATTTTCAAATTTGCTATTGAAGG 1492544 38 100.0 35 CTATTGAAGG ...................................... ATGCTTTGGATTTATGCTTTGAATGCGTATTTGGG 1492617 38 100.0 35 CGTATTTGGG ...................................... CTTAACATAGCCAAAGTTTGCATATATAAGTAAGA 1492690 38 100.0 34 ATAAGTAAGA ...................................... CAAGAGCTGTTTCTTATGCGTGCAGAGATTTATT 1492762 38 100.0 37 GAGATTTATT ...................................... TAGAGACGATTGTTATGGACTTACTCTTAGCGTTTAA 1492837 38 100.0 35 TAGCGTTTAA ...................................... TTATGAATCCAATACCCAGCCATTATTTCTACCAT 1492910 38 100.0 36 TTTCTACCAT ...................................... TATAGACCCCAAGAGGATTAAGGAGGAAAAATGGCA 1492984 38 100.0 37 AAAAATGGCA ...................................... AACTTTTCGATATGACAGGAAAAAATCCTAATGATCT 1493059 38 100.0 35 CTAATGATCT ...................................... CTTTGCCTTGGCCTTTGGCTTTGCCTTTGGCCTTC 1493132 38 100.0 36 TTTGGCCTTC ...................................... TCTGTTACACAGAAGGTAAAAAATTGGGAAATATAT 1493206 38 100.0 35 GGAAATATAT ...................................... CCGGTAACCGATACCACTACTCCTGCATCCGGTAA 1493279 38 100.0 36 CATCCGGTAA ...................................... GGTCTGGAAGGCACCCAATGCGGGGGGAGGTGTCTC 1493353 38 100.0 37 GAGGTGTCTC ...................................... TTTTTATTGTGTTATTTTTGCACACCCTGTTTTCCGT 1493428 38 100.0 37 TGTTTTCCGT ...................................... TCTTCTGCGATGACATTGACTATGGAATTCGCGAAAT 1493503 38 100.0 37 TTCGCGAAAT ...................................... AGATGAATTCCTTCCCAATTTTGACACTCATTCCCTA 1493578 38 100.0 39 TCATTCCCTA ...................................... ATTCACGTCCATAGAGTTGGTAATAATGGACTTGATCGT 1493655 38 100.0 39 ACTTGATCGT ...................................... AGAAAGAATGAAAACAATTCAAGCTTTATTAGGAGCGGA 1493732 38 100.0 35 TAGGAGCGGA ...................................... TGGAGTAAATCCATCTGCTTCTCGTTCGCGGAAAA 1493805 38 100.0 36 TCGCGGAAAA ...................................... TTAAGCGCTTTCCGAAATATGAGACCAGTCCCGTAA 1493879 38 100.0 35 AGTCCCGTAA ...................................... TCCATGTGTAGTGATATACCGAAAAAATGGGAAAG 1493952 38 100.0 36 AATGGGAAAG ...................................... AAAATTGACCCGAATAAGAAGAATATTCGGGTCTGC 1494026 38 100.0 36 TCGGGTCTGC ...................................... GCTACGGATACCACGAAAAAGCGGAAGACGGAAGGA 1494100 38 100.0 36 GACGGAAGGA ...................................... TCCGCGGCAAGCCAAGGCCAAGCAAAGGCATATATA 1494174 38 100.0 36 GGCATATATA ...................................... TGCGGGCAATGGAATAGATATTGACGCAGAAAAAAA 1494248 38 100.0 36 CAGAAAAAAA ...................................... GATTGCACGGGAGATAGAGGTCAAAGTAATAGCTAT 1494322 38 100.0 35 TAATAGCTAT ...................................... AGAGTCCTGAGACGGAGTGGAATCCTGAGAAGGAG 1494395 38 100.0 35 TGAGAAGGAG ...................................... GAAAGATGAAGACAGGAATATAGTAGATATACATC 1494468 38 100.0 36 GATATACATC ...................................... CTTATGATAACGAAATTCTTGTCCTTTCTTAGATAG 1494542 38 100.0 36 TCTTAGATAG ...................................... TACTGGAGAGTTGACCAGCATTGAACCTGATAGAGG 1494616 38 100.0 36 CTGATAGAGG ...................................... AGAAAATGCTAATGAATATTTCTTTGAGACACAAGC 1494690 38 100.0 38 AGACACAAGC ...................................... TGGAAGGAAAAAGGTATCCTGATATGGTTGAAAATGGG 1494766 38 100.0 35 TGAAAATGGG ...................................... AAGAATAGGTTATGAGTTATACTTATTGGCATTGG 1494839 38 100.0 36 TTGGCATTGG ...................................... TAGCCCTCAAAAGGACTAAGGAGGTAACCGATGTCA 1494913 38 100.0 36 ACCGATGTCA ...................................... AAAGTTTGCTTACCAGTAACGGGGTACAGAAACTTT 1494987 38 100.0 36 CAGAAACTTT ...................................... TTTATGGGCAACTCAATTGGAATATATTGTAGAAGC 1495061 38 100.0 36 TTGTAGAAGC ...................................... TGCATAGGAAGCTATTAGGTCTTTGAATTCATTGAG 1495135 38 100.0 37 ATTCATTGAG ...................................... TAGTTTGGTATGCTTACAGGTTTCCACTCTATTTTAT 1495210 38 100.0 36 TCTATTTTAT ...................................... TGAGTATCCATTTCTCCACTGCCTTCTTAAGAAGGG 1495284 38 100.0 36 TTAAGAAGGG ...................................... TTGAATTGTTTTCATTCTTTCTTCAGTTGAATCAGT 1495358 38 100.0 35 TTGAATCAGT ...................................... AGCAAGAAAAGATTATCTCTGGTTAAGCTCAGCAA 1495431 38 100.0 37 AGCTCAGCAA ...................................... GGGCCTGTAACCACAATTCTCAATAATGTATTGGTAA 1495506 38 100.0 36 GTATTGGTAA ...................................... TGACAACAGGAAAGATTGTAAACGTTATCCCCGATA 1495580 38 100.0 38 ATCCCCGATA ...................................... AAGTATGAGTTTGATTGTGGATGGTCTTTCCGCCATTA 1495656 38 100.0 37 TCCGCCATTA ...................................... CCTTTATTCCGAGTATCCATTTCTCTATCGCTTTAGA 1495731 38 100.0 35 TCGCTTTAGA ...................................... TGTAGCTAAAATCATTCTGGGAAAATACAAGTTGT 1495804 38 100.0 37 TACAAGTTGT ...................................... AGTATGAGTTTGATTGTGGATGGTCTTTCCGCCATTA 1495879 38 100.0 35 TCCGCCATTA ...................................... TTTTTAGACTGTAAGGGTAAAATCCGAGGAAAAAT 1495952 38 100.0 36 GAGGAAAAAT ...................................... TTTAGTCCTCTTTCGGTTAGCCGAAAGAATGAAAGT 1496026 38 100.0 36 GAATGAAAGT ...................................... TGAAAAGATGTCAAAATACTTTGATTTGAAATCAGT 1496100 38 100.0 37 TGAAATCAGT ...................................... TCCTTTCTTAGATAGCAACGCCATTCATTATTAGTTG 1496175 38 100.0 36 TTATTAGTTG ...................................... AGTTTGGTATGCTTACAGGTTTCCACTCTATTTTAT 1496249 38 100.0 36 TCTATTTTAT ...................................... GGAATTAGTCAAAAGCTCACTAATTCCGCAATCATT 1496323 38 100.0 37 CGCAATCATT ...................................... TTGTTGTTCCTTCTTCAATGGAGTTAGTTGATGCTCT 1496398 38 100.0 39 TTGATGCTCT ...................................... ACGCGCGGATCCGGTTCCATTATTTGCCAGTAAGTTTCC 1496475 38 100.0 37 GTAAGTTTCC ...................................... CTTGACAGGAAAAATAGGTCCGTGAAAATAGCGTCAT 1496550 38 100.0 36 ATAGCGTCAT ...................................... CTATCCATAACATCACTGTCTACCTAAACCAAGACC 1496624 38 100.0 36 AACCAAGACC ...................................... AATAACATCATCAAAAATAGCCAAGACAAAGCTTGG 1496698 38 100.0 37 CAAAGCTTGG ...................................... AATAATGGTTGCATTGGCATTTTCTTTGACTTTTTCA 1496773 38 100.0 36 GACTTTTTCA ...................................... TTATGGGGGTATTCTATTCCTTGCACTTTTCTATGT 1496847 38 100.0 35 TTTTCTATGT ...................................... TCAAAGAAAATGATTGGAGAATTGCCTAATGAATA 1496920 38 100.0 36 CTAATGAATA ...................................... GCAAGATTGGTGTTATCCCGATATGGAATCCAATTA 1496994 38 100.0 36 AATCCAATTA ...................................... TTATTTCTATGCTGCTGTCCAGCTTGCGCATCCTGT 1497068 38 100.0 37 CGCATCCTGT ...................................... ACAGAAAGCGGGGTATTATGATTTAGTTATAGAACTA 1497143 38 100.0 35 TATAGAACTA ...................................... ATATGGACAGCTGATACTTATACCGAAGCAACCCT 1497216 38 100.0 35 AAGCAACCCT ...................................... AATGTCTGTCTGGACTGTCTGTATATCTGGCTCAT 1497289 38 100.0 35 TCTGGCTCAT ...................................... ATTTTTGAATTATTTTTATTTTCCTTCATCAGGCA 1497362 38 100.0 37 TCATCAGGCA ...................................... TGTTGTCTGAATGTTTTACCATTTTTAATTTCATATT 1497437 38 100.0 36 ATTTCATATT ...................................... AAAATCAGGGGATTCCATCCCCGCCTATAGGAGGAT 1497511 38 100.0 36 ATAGGAGGAT ...................................... GTATGAAGCTTACAAATGCGATTGAGAAGGCTATCG 1497585 38 100.0 36 AAGGCTATCG ...................................... GATAGGTGTGAAGAAGTTCAGATGTTCTATTTTGAG 1497659 38 100.0 35 CTATTTTGAG ...................................... ATCATCATCCGATATTACTGTTCCATTTTCAATAA 1497732 38 100.0 38 TTTTCAATAA ...................................... ATATATGCATTAACCATTTTCTCGTCATAGCTTGACAT 1497808 38 100.0 35 AGCTTGACAT ...................................... CCGTATAGTTCGTTATGATCTTCCAGAGTAATTTG 1497881 38 100.0 36 GAGTAATTTG ...................................... CGGAGCATTGTTCACTTCACGCTTTCATATTTGGTA 1497955 38 100.0 37 ATATTTGGTA ...................................... CTATCGGCACTTTTACTCCATATATCGGCAATTGAGC 1498030 38 100.0 36 GCAATTGAGC ...................................... TTTAGCCGCCGCCTTTCCGGAAATTTACCGGGAGCA 1498104 38 100.0 37 ACCGGGAGCA ...................................... CACATACGCACTGCATGCTGCGGCACATCTCCCGCCA 1498179 38 100.0 37 TCTCCCGCCA ...................................... TTTGATCTTGAAGAGATGGGCATGGATATGCCAGAGA 1498254 38 100.0 35 ATGCCAGAGA ...................................... ACTAATGGCTGAAATGCTTTGGGGCTTTGGCGGAG 1498327 38 100.0 36 TTTGGCGGAG ...................................... CCGCTTGCATTGAAGGACTCGATAAGGAATTCTTCA 1498401 38 100.0 35 GAATTCTTCA ...................................... TGTGCCAGCACCACCTATTCCACCAGTGGCTAATC 1498474 38 100.0 35 GTGGCTAATC ...................................... CGGAATAATATCTATTTCATCAATTCCTGCATCCG 1498547 38 100.0 35 CCTGCATCCG ...................................... ACAACGGAGCGAATGCACGAAATATTCAATGCAAA 1498620 38 100.0 35 TCAATGCAAA ...................................... GAAGGAAAAGGGAGCTATCCCAATTATCCTCAGAG 1498693 38 100.0 36 ATCCTCAGAG ...................................... GGTTAGCGGAGAGGCAGGTGGAAAAATATATTATAT 1498767 38 100.0 36 TATATTATAT ...................................... AATTCTTCAATACCCTGGTGCCAAAGTGGGATGGCT 1498841 38 100.0 36 TGGGATGGCT ...................................... CCGATGCCGAAGTGTCCCCACTCTGCTGTTTTTTCA 1498915 38 100.0 TGTTTTTTCA ...................................... TCATCTTCTT ========== ====== ====== ====== ========== ====================================== 167 38 36 GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: R Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:68.42%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: R [-1.60,-2.80] Score: 0.37/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis suggestion: NA [340,472] Score: 0/0.18 # # Final direction: R [0,5.28 Confidence: HIGH] >NS_000195 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 992831 37 100.0 37 TGTATGTGCT ..................................... ATAAAGGTTCATCTTCATCAGCAGTGTCAGAATCAGA 992905 37 100.0 42 CAGAATCAGA ..................................... TTAAGCTACATCAGGAGGAAGCATTCCCTGATGTAGGTTATG 992984 37 100.0 39 GTAGGTTATG ..................................... ATTCCGGGCTTTTTCCGAGTCAGGAACAATATTATCTGC 993060 37 100.0 38 TATTATCTGC ..................................... TAAAGTCCCAGTCTGAAGATAATATTGTGTTTATAGCC 993135 37 100.0 36 GTTTATAGCC ..................................... GTAAATACTAATCCTATCAGTTTCATTTTTCCTCCT 993208 37 100.0 36 TTTTCCTCCT ..................................... AGGAATAGTCATTTTTCCACGAAGCACTACTGCGAT 993281 37 100.0 42 CTACTGCGAT ..................................... AAAAAAGCACTCCAAACAGCTTGGAGAGGTTTTGTTTTGAGA 993360 37 100.0 37 TGTTTTGAGA ..................................... TTTAGATTGTGCATTGAATCGAAGGCACCATCCTTAT 993434 37 100.0 43 CCATCCTTAT ..................................... TATCCCCAATTATCTTTGTTTTCACCAAAGATTCTGGAAATTA 993514 37 100.0 35 CTGGAAATTA ..................................... GTGAACGCTTTTTTGGTCAAGCAAGGTGTTTTTAA 993586 37 100.0 42 GTGTTTTTAA ..................................... TTTAAAGCTTTAAACACTTTGAATTTGTTAGCTAAATCCATT 993665 37 100.0 39 TAAATCCATT ..................................... TTTTTGTTGTAGAAATATTCGAAAGCTTCATAGTCTTCC 993741 37 100.0 41 ATAGTCTTCC ..................................... GACCACGAATTGCCCCGATATTTCGTTTTAGCAATACGATC 993819 37 100.0 40 CAATACGATC ..................................... TCAAAATATGGACAAGAACGATAATCGTGATAACAGATAT 993896 37 100.0 40 TAACAGATAT ..................................... TATATTTCGGAGATTGACTTCTTATCTACCTCGTATTTTA 993973 37 100.0 43 TCGTATTTTA ..................................... AAACACGATGAACAATACCATCCCGATGGCGGTTAATATTTGT 994053 37 100.0 37 TAATATTTGT ..................................... ATGGAAGTGAAGCCTATGGGTTCATAGATTGCCCAAT 994127 37 100.0 40 ATTGCCCAAT ..................................... ATTAGGATACATAGCGGAAAAAACTGGCACAGGATCTGCG 994204 37 100.0 42 AGGATCTGCG ..................................... CAATTGAGGCTCCTCATCCCGGTTCATGGTTCTGTACAATCT 994283 37 100.0 42 TGTACAATCT ..................................... GATCGCTCTGAACCCAGATTTCAGCCTTCACATATGACCCAT 994362 37 100.0 37 TATGACCCAT ..................................... GATCGCTCTGAACCCAGATTTCAGCCTTCACATATGA 994436 37 100.0 41 TCACATATGA ..................................... CGTCTTCCTGGTAATACGAGATCACCAGGAAGGGCTTTCCT 994514 37 100.0 41 GGGCTTTCCT ..................................... AATTGACTCAGCAACAAGCTCGCCATTGGCTTTGGTTGCTC 994592 37 100.0 40 TTGGTTGCTC ..................................... ACTTCTGCCAAATCTTTAGCAGAGCCAAAAAGCGTCCTAT 994669 37 100.0 38 AGCGTCCTAT ..................................... AAGATCTTTGGGGTCATCTCTTGCTCAATGTCAAAATT 994744 37 100.0 39 TGTCAAAATT ..................................... TTCGAACTGGGAAATAACCGTTACTTCTAATAAGTTCAT 994820 37 100.0 40 ATAAGTTCAT ..................................... AATGACCTCAGTTTTTCTTGTTCAGGAAATACCCACTTGA 994897 37 100.0 38 ACCCACTTGA ..................................... AAGATCTTTGGGGTCATCTCTTGCTCAATGTCAAAATT 994972 37 100.0 39 TGTCAAAATT ..................................... TTCGAACTGGGAAATAACCGTTACTTCTAATAAGTTCAT 995048 37 100.0 40 ATAAGTTCAT ..................................... AATGACCTCAGTTTTTCTTGTTCAGGAAATACCCACTTGA 995125 37 100.0 39 ACCCACTTGA ..................................... TTGGTTCACGGCTGCTTCGTACCATTGAGCTTGTGCCAT 995201 37 100.0 38 CTTGTGCCAT ..................................... ATTAATCTTCCTTCCAGATATCGCACTGGAAGGTTGGG 995276 37 100.0 39 GAAGGTTGGG ..................................... TCTCTGTATCTCTTATACAGAGAATTCCCGAATCATCAT 995352 37 100.0 37 GAATCATCAT ..................................... TCAACCTATTTTCTGTACCTGTTGAATGAGCACATTC 995426 37 100.0 39 GAGCACATTC ..................................... ATGATTATGATTAACAAAACTACGGTTATGAATAGATAC 995502 37 100.0 42 GAATAGATAC ..................................... TTAAAAATTGACCGTTAATACACGCTTTTAAGCTAACGCTGA 995581 37 100.0 39 CTAACGCTGA ..................................... TCAACTAAACCACAAACGAATGCTGGAAACGCCCATCCT 995657 37 100.0 43 CGCCCATCCT ..................................... ACTTACCCAAATTTCAGCTCTAACAAATGAACCAAATTTTGGA 995737 37 100.0 38 AAATTTTGGA ..................................... ATTCTGTACCGAAGAAATACTACTTCTCTTCACAGCGA 995812 37 97.3 41 TTCACAGCGA .................................A... TCAATTACTTTTTTTTCAACTTCTTTCTTTGTCATTTTTTG 995890 37 97.3 42 TCATTTTTTG .................................A... TATTGATAGATTTATCCCTCAATGCTTGAAGGAATTTTTCTC 995969 37 97.3 40 AATTTTTCTC .................................A... CATCCACAAGCCATTTACATAGCCACATACGAATGCTGGA 996046 37 97.3 38 GAATGCTGGA .................................A... CACATCAACTTCATAACGAAGCTAATGCGTTCGTTATA 996121 37 100.0 40 GTTCGTTATA ..................................... CCTCTCTTCTTCTTCACCTCACACCGGGGGGAGACATTCC 996198 37 100.0 39 GAGACATTCC ..................................... GGAAATGGCTTCTGCTAATACAGAGGCAGACCCGAAAAG 996274 37 100.0 41 ACCCGAAAAG ..................................... TGAACTGGAAAATATCCAAAAGATCTAATGATCCCTTCTGC 996352 37 100.0 38 TCCCTTCTGC ..................................... TTGGCTTCTTCAATAGTGATTGCCCGCATTTCGGAATT 996427 37 100.0 35 TTTCGGAATT ..................................... ATTACTTTTTGGTTTTTTCTGTAAATCGCGACATA 996499 37 100.0 38 TCGCGACATA ..................................... CTATTCGTACCCTATCATCACACGGATCATACCGGAAG 996574 37 100.0 40 ATACCGGAAG ..................................... TCTTTTCTGAATTATACAGGTTTTTCCATCCCCTAAATGG 996651 37 100.0 39 CCCTAAATGG ..................................... TTAAACTGTTGTTTCAGTGGAACTAATCCACTGGCCTTT 996727 37 97.3 41 ACTGGCCTTT .................................A... AATATTCTTCTTATTCGGGTTAATTTTTCAATTACTTTTTC 996805 37 97.3 38 TTACTTTTTC .................................A... CCAATTCTGCGCCTTTTCGCTCACCGCCCAAAATCCAT 996880 37 97.3 43 CAAAATCCAT .................................A... TACCACAAGTTCCATAATGATGTACTCCTCCCTCTTCAGCCCA 996960 37 97.3 36 CTTCAGCCCA .................................A... AATAGATAAGGTTTCCCATTTTCAGACATAATGGGA 997033 37 97.3 46 CATAATGGGA .................................A... GCATTTGAAAGGCAAGGGTCAGAAAAACGGAGCCATTGTCGGTTTG 997116 37 97.3 38 TGTCGGTTTG .................................A... GAGTGCTGTGGAGATTGTCCGGAATAATCTCAACCAAT 997191 37 97.3 40 CTCAACCAAT .................................A... TAAAAGAAACGGTTTCTTTCCAGCAGCCATATCTGGCATC 997268 37 97.3 ATCTGGCATC .................................A... GAAAACACTG ========== ====== ====== ====== ========== ===================================== 59 37 39 ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:59.46%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.90,-3.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks suggestion: F [66.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: R [13,2626] Score: 0.18/0.18 # # Final direction: F [5.14,0.18 Confidence: HIGH] >NS_000195 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ===================================== ====== 997341 37 100.0 47 AAAACTGATG ..................................... CTCCCAGAACTCCTGACGGGTACTGTTGTACCCGTCCAGGATACTCC 997425 37 100.0 36 AGGATACTCC ..................................... GAAAACACTGGCACAGGATCAGCTCCAAAACTGATG 997498 37 100.0 47 AAAACTGATG ..................................... CTCCCAGAACTCCTGACGGGTACTGTTGTACCCGTCCAGGATACTCC 997582 37 100.0 37 AGGATACTCC ..................................... CGAAAATATTAAAAGAAACGGCTTCCCATTTTCAGCC 997656 37 100.0 40 ATTTTCAGCC ..................................... TCAAACCGGAAGTGGTTTCCCGGAAAAGCAAAAGATATGC 997733 37 100.0 41 AAAGATATGC ..................................... TTCTCGTATTATTTCTTTTAATTCTTCTTTTTTCATTTTTT 997811 37 100.0 37 TTCATTTTTT ..................................... TTGCCTCAGATAGGGTTATCATCCTCATTTCGCTGTA 997885 37 100.0 41 TTTCGCTGTA ..................................... AAAAAAAAGGCAAATTTGATAATTCCTGAATTATATCAGGA 997963 37 100.0 37 TATATCAGGA ..................................... GCTATAATCGGCTTCTGCAATATATATATTTACTCGT 998037 37 100.0 39 ATTTACTCGT ..................................... GAATTCATCGCATAGTTCTACATATTTTTCCACCACCCA 998113 37 100.0 39 CCACCACCCA ..................................... ACTTGATAGTGGTCTGATGTAAATTGAATACATCTTTAT 998189 37 97.3 38 ACATCTTTAT .................................T... AGCACCTCCCAGAGGATGTAGATAAATGAGGCAATCGT 998264 37 97.3 35 AGGCAATCGT .................................T... CAATTGCCAACTTCTTCACCTCTCTGTCCTGAAGG 998336 37 97.3 37 GTCCTGAAGG .................................T... TCACAACTTTCTATTTCCGGATGGTAGAATTCACAGT 998410 37 97.3 41 AATTCACAGT .................................T... TCCCTAACCCAACCAAGCCCGCTAAGGTCGATATCTGGCTT 998488 37 94.6 37 TATCTGGCTT ...........T.....................T... TTCGCCGAACTCTCCAGTTCTATAAGCTCTAATCGCA 998562 37 97.3 33 TCTAATCGCA .................................T... GGTGCAAGCACTTATTCACTTTATGACAACCCA 998632 37 97.3 TGACAACCCA .................................T... AACTTTACCACAGTTCCTTCGGGAAGCTCACCACGGAACAC ========== ====== ====== ====== ========== ===================================== 18 37 38 ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: F Score: 4.5/4.5 # A,T distribution in repeat suggestion: NA [Repeat is AT rich:59.46%AT] # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: F [-4.90,-3.40] Score: 0.37/0.37 # Array degeneracy analysis suggestion: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis suggestion: F [4523,1262] Score: 0.18/0.18 # # Final direction: F [5.46,0 Confidence: HIGH] >NT_187133 Pos Repeat %id Spacer Left flank Repeat Spacer ========== ====== ====== ====== ========== ====================== ====== 40 22 100.0 34 NNNNNNNNNN ...................C.C GCGTACTCTGCGTTGATACCACTGCTTCCCGCGT 96 22 100.0 38 NNNNNNNNNN ...................... TCCCGCGTACTCTGCGTTGATACCACTGCTTCCCGCGT 156 22 100.0 35 NNNNNNNNNN ...................... ACGAGAAAGTAAAAAAGAAAAAAGTACCGACTGCG 213 22 100.0 1 NNNNNNNNNN ...................... NNNNNNNNNN ========== ====== ====== ====== ========== ====================== 4 22 35 ACTCTGCGTTGATACCACTGCT # Directional analysis summary from each method: # Motif (ATTGAAA.?) match suggestion: NA Score: 0/4.5 # A,T distribution in repeat suggestion: R [4,7] Score: 0.37/0.37 # Reference repeat match suggestion: NA # Secondary Structural analysis suggestion: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis suggestion: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks suggestion: R [13.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis suggestion: NA # # Final direction: R [0,1.05 Confidence: HIGH]